# hmmscan :: search sequence(s) against a profile database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             peptides/protein_motifs.faa
# target HMM database:             /home/analysis/reflibs/hmmer3/tigrfams/12.0/tigrfams.hmm
# output directed to file:         tigr/tigrfam.hits
# per-seq hits tabular output:     tigr/tigrfam.hits.tbl
# prefer accessions over names:    yes
# max ASCII text line length:      unlimited
# number of worker threads:        4
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       MMETSP1061-20121228|3_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.38s 00:00:00.57 Elapsed: 00:00:15.75
# Mc/sec: 2.93
//
Query:       MMETSP1061-20121228|5_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.38s 00:00:00.61 Elapsed: 00:00:09.11
# Mc/sec: 8.39
//
Query:       MMETSP1061-20121228|1_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-14   51.1   0.4      3e-14   50.9   0.3    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.3   7.2e-18     3e-14       6      67 ..       1      59 [.       1      61 [. 0.97

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 7.2e-18
  TIGR00601  6 KtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikek 67
               Ktl ++++++d+ep++t+ ++K+ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +
    MMETSP1061-20121228|1_1  1 KTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKE 59
               89****************************...**************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.23s 00:00:00.41 Elapsed: 00:00:08.51
# Mc/sec: 9.62
//
Query:       MMETSP1061-20121228|2_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.36s 00:00:00.65 Elapsed: 00:00:02.45
# Mc/sec: 28.55
//
Query:       MMETSP1061-20121228|8_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.25s 00:00:00.35 Elapsed: 00:00:02.82
# Mc/sec: 25.74
//
Query:       MMETSP1061-20121228|7_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.20s 00:00:00.34 Elapsed: 00:00:01.49
# Mc/sec: 46.06
//
Query:       MMETSP1061-20121228|11_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.30s 00:00:00.49 Elapsed: 00:00:00.71
# Mc/sec: 172.89
//
Query:       MMETSP1061-20121228|14_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:02.45
# Mc/sec: 31.79
//
Query:       MMETSP1061-20121228|12_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.29s 00:00:00.55 Elapsed: 00:00:02.77
# Mc/sec: 112.93
//
Query:       MMETSP1061-20121228|15_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.31s 00:00:00.58 Elapsed: 00:00:00.82
# Mc/sec: 133.60
//
Query:       MMETSP1061-20121228|19_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-13   47.2   0.1    2.4e-13   47.2   0.1    1.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    1.1e-08   32.0   0.0    1.2e-08   31.9   0.0    1.0  1  TIGR00485 EF-Tu: translation elongation factor Tu
    5.8e-06   23.1   0.0    5.8e-06   23.1   0.0    1.0  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
      5e-05   19.5   0.0    5.1e-05   19.5   0.0    1.0  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
  ------ inclusion threshold ------
      0.024   11.7   0.0      0.028   11.4   0.0    1.2  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
       0.03   11.2   0.0       0.03   11.2   0.0    1.0  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.1   3.4e-16   2.4e-13     209     268 ..       1      61 [.       1      63 [] 0.92

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 3.4e-16
  TIGR00483 209 tllealdkl.eapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepagvs 268
                t+++ald++  +p+++ d  lr+p+ ++y+i gvg +  g ve g l++g++v f p+ + 
   MMETSP1061-20121228|19_1   1 TIVDALDNFiTPPKRLPDAALRLPVSNIYNIKGVGQIICGTVEQGTLRPGDQVGFVPSNLK 61 
                799****9527889999****************************************8765 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   1.8e-11   1.2e-08     192     246 ..       2      56 ..       1      61 [. 0.95

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 1.8e-11
  TIGR00485 192 lmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveiv 246
                +++a+d++i  p+r  d ++ l++ +++ i+g g ++ g ve+g+++ g++v  v
   MMETSP1061-20121228|19_1   2 IVDALDNFITPPKRLPDAALRLPVSNIYNIKGVGQIICGTVEQGTLRPGDQVGFV 56 
                6899***********************************************9876 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   8.4e-09   5.8e-06     175     215 ..      19      59 ..       6      62 .. 0.92

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 8.4e-09
  TIGR00475 175 kplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepin 215
                  lrl++ +++++KG+G ++ Gt+ +G+ + gD++   p n
   MMETSP1061-20121228|19_1  19 AALRLPVSNIYNIKGVGQIICGTVEQGTLRPGDQVGFVPSN 59 
                579*******************************9888766 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   7.4e-08   5.1e-05     183     236 ..       3      56 ..       1      62 [. 0.91

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 7.4e-08
  TIGR01394 183 fdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvall 236
                +da+ + + +Pk  +d++l+l v+++ + + +G+i+ g ve+G+++ g+qv ++
   MMETSP1061-20121228|19_1   3 VDALDNFITPPKRLPDAALRLPVSNIYNIKGVGQIICGTVEQGTLRPGDQVGFV 56 
                567778899*****************************************9876 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.1e-05     0.028     189     251 ..       3      57 ..       1      61 [. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.1e-05
  TIGR03680 189 lealekeiptperdldkdalllvarsfdvnkPGteieklkGGviGGslvqGklkvgdeieirP 251
                ++al+++i  p+r +d+  +l v+  +++          +G +i G++ qG+l+ gd++   P
   MMETSP1061-20121228|19_1   3 VDALDNFITPPKRLPDAALRLPVSNIYNIKG--------VGQIICGTVEQGTLRPGDQVGFVP 57 
                6677777777777777777777777776643........578****************99888 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.4e-05      0.03     200     257 ..       2      60 ..       1      63 [] 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.4e-05
  TIGR02034 200 llevletvevee.saeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgr 257
                +++ l++  +   +  +  lrlpv  +   +   +   Gt+  G++++Gd+v  +ps+ 
   MMETSP1061-20121228|19_1   2 IVDALDNFITPPkRLPDAALRLPVSNIYNIKGVGQIICGTVEQGTLRPGDQVGFVPSNL 60 
                5666666544432678899******999988888899*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.31u 0.37s 00:00:00.68 Elapsed: 00:00:02.81
# Mc/sec: 29.59
//
Query:       MMETSP1061-20121228|24_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         4  (0.000975134); expected 82.0 (0.02)
Passed bias filter:                        4  (0.000975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.51
# Mc/sec: 131.99
//
Query:       MMETSP1061-20121228|23_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-28   95.8   0.1    6.4e-28   95.7   0.1    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    1.1e-15   55.6   0.0    1.2e-15   55.5   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.1   3.1e-31   6.4e-28     241     330 .]       2      90 ..       1      90 [. 0.96

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 3.1e-31
  TIGR01534 241 pdvSlvdlvlnlekevtkeevnaalkeaseg.lkgvlgysedelVSsDiigspkssivdakatkvtelkeklvkvvaWYDNElgysnrlvd 330
                 +vS+vdl+ +l+k +++e v+aa+k+aseg +kg+lgy+++++VSsD+++sp ssi+d+ka ++  l+++++k+v+WYDNE+gysnr++d
   MMETSP1061-20121228|23_1   2 INVSVVDLTARLDKGASYETVCAAIKDASEGkMKGILGYQNTDIVSSDFMSSPLSSIFDEKAGIA--LSDDFAKLVSWYDNECGYSNRVLD 90 
                59***************************************************************..5567******************97 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   5.8e-19   1.2e-15     237     325 .]       2      90 ..       1      90 [. 0.98

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 5.8e-19
  TIGR01532 237 vnvtaldlsvtvkkdvkanevnrvlreaaesalrgivdytelplvsvdfnhdphsaivdgtqtrvsgarlvkllvwcdnewgfanrmld 325
                +nv+ +dl+ +++k  + + v   +++a+e+ ++gi+ y +   vs df   p s+i d       +  + kl+ w+dne g++nr+ld
   MMETSP1061-20121228|23_1   2 INVSVVDLTARLDKGASYETVCAAIKDASEGKMKGILGYQNTDIVSSDFMSSPLSSIFDEKAGIALSDDFAKLVSWYDNECGYSNRVLD 90 
                8***********************************************************999999999******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.22s 00:00:00.43 Elapsed: 00:00:02.95
# Mc/sec: 44.29
//
Query:       MMETSP1061-20121228|28_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.33s 00:00:00.62 Elapsed: 00:00:00.65
# Mc/sec: 103.56
//
Query:       MMETSP1061-20121228|32_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.39s 00:00:00.93 Elapsed: 00:00:01.46
# Mc/sec: 307.37
//
Query:       MMETSP1061-20121228|35_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.35s 00:00:00.64 Elapsed: 00:00:01.54
# Mc/sec: 347.11
//
Query:       MMETSP1061-20121228|37_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.30s 00:00:00.48 Elapsed: 00:00:00.83
# Mc/sec: 211.50
//
Query:       MMETSP1061-20121228|38_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    6.6   7.7        1.3    6.5   5.3    1.0  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein
        3.8    3.5   8.9        4.4    3.3   6.2    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   5.3   0.00066       1.3     123     227 ..      18     124 ..       3     130 .] 0.62

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00066
  TIGR03354 123 taalqqvsseaseedlddslteagegaaprpapqaasldPlkaldqepasaadlddga....lsaelaeevaealpadlasidaestlepelaplpaaqpapapqeqeq 227
                +a++++ ++  s+  l+++  + +++aap++ap   +++ +k   + ++   ++d+        a++a++ a+ + a+ a++++++t  p+lap p +++ ++ +++  
   MMETSP1061-20121228|38_1  18 AAIIEDNQPIVSTRLLAKGSKTSKKTAAPTKAPT--KSPTVKTSKKGSKKGTPVDEAPtaapSAAPSASPTASPTAAPSAAPTSAPTSAPTLAPTPGVTQTTTSSSTSG 124
                4466777777778888888888899999999988..4566655555555555566655223444445555555555566666666888888888888887777766555 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   6.2    0.0021       4.4     230     328 ..      23     122 ..      19     130 .] 0.77

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0021
  TIGR03835 230 eddkfvslrelepqddseddyviddaeiissttlevtaqkeveqplqpepvdeetvaevkaeeesePvqtvetkpveavest.veenlPeinettqavep 328
                +++  vs+r l   +++  ++  + ++ + s+t++ +++ + +    +e      +a  +a + + P+ + ++ p++a+ s+    ++P + +tt +  +
   MMETSP1061-20121228|38_1  23 DNQPIVSTRLLAKGSKTSKKTAAPTKAPTKSPTVKTSKKGSKKGTPVDEAPTAAPSAAPSASPTASPTAAPSAAPTSAPTSApTLAPTPGVTQTTTSSST 122
                5666788999999999999999999999999999988888777666666666666778888999999999999999999886356899*99998876543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.27s 00:00:00.45 Elapsed: 00:00:01.19
# Mc/sec: 144.19
//
Query:       MMETSP1061-20121228|36_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-151  503.5   9.7   1.5e-151  503.3   6.7    1.0  1  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  503.3   6.7  3.7e-155  1.5e-151      45     332 ..       2     289 ..       1     290 [] 0.99

  Alignments for each domain:
  == domain 1    score: 503.3 bits;  conditional E-value: 3.7e-155
  TIGR00811  45 lvimwlgilwmsmveggqcsmvglppidrdlykeshpitykicslghkgnnldrylmgrqflvifinftinlcgaplegaevlglpeiltdiflgsgiamvltvvtigqltaqvnashcmldyinthfmtftlyvtliievtgvmhscylirdmfyfaagkpvetnepprsavqnlfhwgrvvfslgvlcfalavtlealfkgkttmwefipngvavvlfvllmslvgllegmqiaffavakipkaergdhpfarktcellfkgngrnlpgfmvgrqltvtlcffiia 332
                 vimw  i+wmsmveggqcsmvglppidr+ly+eshpityki   ghkg+nldrylmgrqf+vifinfti lcgapl ga+vlglp+ ++ iflgsgiamvl  v +gqlt+q nash mldyinthfmtft +v+  ievtgvmh+ ylir m y+aagkpve+nepp++ +   f w rv fslgvl fal vt++al++gkt+ w+ ip+ v+++lf +lm+ vgllegmqiaff+vak+pk+erg   +a ktc++lf+  grnlpgfm grq+tvtlcff+ia
   MMETSP1061-20121228|36_1   2 GVIMWSLIIWMSMVEGGQCSMVGLPPIDRELYRESHPITYKITGWGHKGDNLDRYLMGRQFMVIFINFTIGLCGAPLSGAKVLGLPDWVSAIFLGSGIAMVLQNVIVGQLTSQCNASHMMLDYINTHFMTFTYWVAAGIEVTGVMHTSYLIRMMAYWAAGKPVESNEPPKTGITFAFFWLRVLFSLGVLGFALGVTIDALYRGKTSAWDGIPETVSLLLFFILMCCVGLLEGMQIAFFTVAKLPKSERGSSNMALKTCDILFRNGGRNLPGFMCGRQMTVTLCFFVIA 289
                59*********************************************************************************************************************************************************************************************************************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.25s 00:00:00.51 Elapsed: 00:00:00.73
# Mc/sec: 524.34
//
Query:       MMETSP1061-20121228|40_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.6   1.3      0.015   12.6   0.9    1.0  1  TIGR03094 sulfo_cyanin: sulfocyanin


Domain annotation for each model (and alignments):
>> TIGR03094  sulfo_cyanin: sulfocyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.9   3.6e-06     0.015       7      41 ..       5      39 ..       1      51 [. 0.45

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.6e-06
  TIGR03094  7 avlvviivlivavgvavyaYkeynvlssdtsaast 41
               +v vv++v++v+v   v +  +  +    +++  +
   MMETSP1061-20121228|40_1  5 PVFVVVVVVVVIVVFIVVVVAKTATAKESQGTERN 39
               44444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       470  (0.114578); expected 82.0 (0.02)
Passed bias filter:                      349  (0.0850804); expected 82.0 (0.02)
Passed Vit filter:                        56  (0.0136519); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.32s 00:00:00.47 Elapsed: 00:00:02.89
# Mc/sec: 24.66
//
Query:       MMETSP1061-20121228|39_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.26s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 722.64
//
Query:       MMETSP1061-20121228|41_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-65  217.2   1.8    8.1e-65  216.9   1.2    1.0  1  TIGR02992 ectoine_eutC: ectoine utilization protein EutC
    2.2e-50  169.5   0.8    2.7e-50  169.2   0.5    1.0  1  TIGR02371 ala_DH_arch: alanine dehydrogenase
    1.2e-27   94.6   0.1    1.7e-27   94.1   0.1    1.3  1  TIGR03944 dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB


Domain annotation for each model (and alignments):
>> TIGR02992  ectoine_eutC: ectoine utilization protein EutC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.9   1.2   5.9e-68   8.1e-65      17     315 ..      65     370 ..      53     373 .. 0.94

  Alignments for each domain:
  == domain 1    score: 216.9 bits;  conditional E-value: 5.9e-68
  TIGR02992  17 ldavdvveeafaalatekvvmppilrldipeh....rGevdvktayvpgldgfaikvsp.Gffdn.pklGlpslnGlmvllssrtGlleallldnGyltdvrtaaaGavaarrlare.dasevailGaGvqarlqlealtlvrdiksariwardaakaealalslaselGldvtaatdvrealsgadiivtttpaetpvlkaewlepGqhvtamGsdaehkneidpavlakadlyvadrlsqtallGelhhaiaaglvaaeqefaelGqviaGkkvGrrsddeitladltGtGvqdtaiatlafar 315
                 da+  veeaf ala +kv +p  ++++i e      G+  +k  yv g ++f++k++   f++n  +  lp+ +G+ v++ ++tG   a++ +n  +td+rt aaGava ++ + + d++++  +G+G  ar   +a + vr+      +  d++ a+  a +++ elGld t+a + +e  +++++i t t  ++ vlk ++l++G  ++a Gsd+  k+e+  +vl  ad+y+ad ++qt+++Gel+ ai+a+++++e ++aelG+++ G+k Gr +d+ei+++dltGtG qd+ai ++a ++
   MMETSP1061-20121228|41_1  65 ADAISSVEEAFGALADGKVDVPMPMHIGIEESlfagPGDCHIKGGYVYGAKTFTVKLACvSFYKNvTERNLPAGSGVFVVVDAQTGAPLAFFQENRIMTDLRTGAAGAVAVKYTTPDdDSNVIGFIGTGAIARNMARAAAAVRPNFTGVAYGLDVQGAQTFAKEMSAELGLDFTVASSSEELCKNSNVIFTQTTGSEHVLKLDYLRKGTTIIASGSDQPTKQELPNNVLKSADKYIADLINQTSRVGELRGAIEANVMTTEDVYAELGDLVNGSKAGRENDEEIIVVDLTGTGAQDAAIGQVAWEK 370
                59***************************995333358999***************98637888834689******************************************998651677889********************************************************************************************************************************************************************************999865 PP

>> TIGR02371  ala_DH_arch: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.2   0.5   1.9e-53   2.7e-50       7     312 ..      55     370 ..      50     373 .. 0.91

  Alignments for each domain:
  == domain 1    score: 169.2 bits;  conditional E-value: 1.9e-53
  TIGR02371   7 qeeveslvdmdealkaveeafrqealGkvqmppkvylffe..vy..nGdlrvmpayleelelaGvk..ivnvhpgnpdrnlptvmaliilvspetGfpvavmdg.tyltdlrtGaaGGvaakyla.rkdssvlGliGaGrqaytqlealsrvfdleevkvysrtkeaaekfvkeas.dyevpvsaaeepaekvsdcdilvtttpsrkpvvkaewveeGthinaiGadapGkqeldpeilkka.kivvddleqakhsGeinvpvskgvisvedvhaslGevivGlkeGrtseeeitifdstGlaiqdvatakvvyer 312
                 e ++  + + +a+  veeaf   a Gkv +p  +++  e   +   Gd  +   y+ + +   vk  +v  +    +rnlp+   ++++v+ +tG+p+a  +    +tdlrtGaaG va+ky +   ds+v+G+iG+G  a+    a + v    +  +y    + a+ f+ke+s + +   ++a  + e  ++ +++ t t   + v+k +++++Gt i a G+d p kqel  ++lk a k + d ++q+   Ge+  ++  +v++ edv a+lG+++ G k Gr+ +eei + d tG   qd a+ +v +e+
   MMETSP1061-20121228|41_1  55 YETIKDNLTVADAISSVEEAFGALADGKVDVPMPMHIGIEesLFagPGDCHIKGGYVYGAKTFTVKlaCVSFYKNVTERNLPAGSGVFVVVDAQTGAPLAFFQEnRIMTDLRTGAAGAVAVKYTTpDDDSNVIGFIGTGAIARNMARAAAAVRPNFTGVAYGLDVQGAQTFAKEMSaELGLDFTVASSSEELCKNSNVIFTQTTGSEHVLKLDYLRKGTTIIASGSDQPTKQELPNNVLKSAdKYIADLINQTSRVGELRGAIEANVMTTEDVYAELGDLVNGSKAGRENDEEIIVVDLTGTGAQDAAIGQVAWEK 370
                56788889999******************9888887765511342268***********9998888446777888899**********************98761567***************98256799**********************999999*****************8999999999999999999*********************************************98578899999************************************************************99997 PP

>> TIGR03944  dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.1   1.3e-30   1.7e-27      75     313 ..     125     369 ..      60     373 .. 0.91

  Alignments for each domain:
  == domain 1    score: 94.1 bits;  conditional E-value: 1.3e-30
  TIGR03944  75 SfpeNvek.gleRAsaviiLNdaetgypvaileasli.SaaRTAasaalaarvlakekkakrvgiiGcGlIarevlrfllelgpeleevslyDldearaeafaaelkeevekkvevaesaeealreadlvvlaTvaatpyiddlallkkgalvlni.S....LrDlapevilkadn.ivDdvehvlraktslelaeqetgsrefitaelaeiltgeklkredkdepilfsPfGlgilDlavaklvye 313
                Sf +Nv++ +l+  s v +  da+tg p+a+ +   i    RT a  a+a+++ + +++++ +g+iG+G Iar++ r+ +++ p+++ v  y ld + a++fa+e+++e   +++va+s+ee++++++++++ T+ ++ ++ +l+ l+kg++++   S     + l ++v+++ad+ i D +++  r       +e +    e + ael+++++g+k +re+++e+i+    G g +D a++++  e
   MMETSP1061-20121228|41_1 125 SFYKNVTErNLPAGSGVFVVVDAQTGAPLAFFQENRImTDLRTGAAGAVAVKYTTPDDDSNVIGFIGTGAIARNMARAAAAVRPNFTGVA-YGLDVQGAQTFAKEMSAELGLDFTVASSSEELCKNSNVIFTQTTGSE-HVLKLDYLRKGTTIIASgSdqptKQELPNNVLKSADKyIADLINQTSRVGELRGAIEANVMTTEDVYAELGDLVNGSKAGRENDEEIIVVDLTGTGAQDAAIGQVAWE 369
                999***998**********************9877762568***********************************************97.9****************9988******************99998776.555********99986412111145677889******99************9999999999******************************************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.34s 00:00:00.61 Elapsed: 00:00:00.77
# Mc/sec: 641.09
//
Query:       MMETSP1061-20121228|45_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.25s 00:00:00.41 Elapsed: 00:00:00.77
# Mc/sec: 289.69
//
Query:       MMETSP1061-20121228|52_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 207.98
//
Query:       MMETSP1061-20121228|53_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-56  189.8   0.5    8.8e-27   91.8   0.4    3.7  3  TIGR00054 TIGR00054: RIP metalloprotease RseP
    9.9e-05   19.2   0.3    0.00017   18.5   0.2    1.3  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   1.6e-26   3.3e-23       8      82 ..      88     162 ..      85     175 .. 0.87
   2 !   12.7   0.0   4.4e-06     0.009      76     115 ..     268     307 ..     258     313 .. 0.85
   3 !   91.8   0.4   4.3e-30   8.8e-27     272     420 ..     439     597 ..     327     598 .] 0.87

  Alignments for each domain:
  == domain 1    score: 80.1 bits;  conditional E-value: 1.6e-26
  TIGR00054   8 asilalavlifvHElGHfllArlcgvkverFsiGfGkkllkfkkneTeyaisliplGGYvklkldkeeevkvaet 82 
                 ++ +la +++vHE GH+l+Ar + + v +Fs+GfG+k++ f+ ++ e+ ++++plGGYv+++++ + e +++++
   MMETSP1061-20121228|53_1  88 GAVAVLAGIVVVHECGHYLAARAFNITVDEFSVGFGPKVVGFEAFGNEFNLRALPLGGYVRFPENYDSEAVMENE 162
                6899**********************************************************9666666444333 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 4.4e-06
  TIGR00054  76 evkvaetdkdafkkksvlqkviiiaagplanlifailvyi 115
                 +++ ++d++++++++  +++i++++g++ nli+a+ +y+
   MMETSP1061-20121228|53_1 268 YQVEYYDDPQLLQNRPWPERAIVLSGGVICNLILAFTIYF 307
                3678899*****************************9997 PP

  == domain 3    score: 91.8 bits;  conditional E-value: 4.3e-30
  TIGR00054 272 kgk.igvglspklkkle..vssgilealakavektedivkl....ilkllskLitgslk..lkelsGpvgIv.kgasssaklgivyllqflallSinLgiiNllplPvLDGgqllfllieaikgkplsekvqafvyriGvallllLmvlalfnDlkrLl 420
                + + igv lsp + +le   s +++ al+ a e + di       +l++l+ +++ s     +++sGp+g++ +g s +a  +    l f+a lS+nLg+iN lplP+LDGgql+f++ eai gk++++k q+ v +i v +ll + + a   D+  L+
   MMETSP1061-20121228|53_1 439 NVQsIGVMLSPRIDRLErlKSDNPIIALQLAWEYLSDIFTQtllgTLSVLTSFLSPSGPppGQKISGPIGLIsQGSSVVATKDWTAVLLFAAGLSVNLGVINALPLPALDGGQLVFVVAEAITGKKVDQKLQERVTSIAVLFLLWVSFSAAIGDVGSLF 597
                444599**********99888999999999988887776651111567777777665544479*******661566778999***************************************************************99999888887775 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.2   8.1e-08   0.00017     259     350 ..     328     430 ..     317     459 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 8.1e-08
  TIGR02037 259 kGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilR...kgkekeikvtlkeaeeekasseks........ekkellglsv 350
                +G++va+  +    +++ l++GD+i+++ngk +    +l++ +++ +   +  ++ +R   +g++++++v  ++  + k+++e++        +k++ + +++
   MMETSP1061-20121228|53_1 328 NGVVVAQAPRPDGPSNGLLQRGDIITEINGKAVVVPGSLKTSVAAGQQQVTDVISAIRgtpDGESVSVSVLRGAGMDYKSTTEEKgmmsdatsAKQTKTTVRI 430
                689999988777778899****************************999999999999433466666666555433333333322222222222233333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.25s 00:00:00.65 Elapsed: 00:00:00.70
# Mc/sec: 1127.56
//
Query:       MMETSP1061-20121228|51_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0065   14.2   3.4      0.019   12.7   2.3    1.8  1  TIGR04081 selen_ocin: radical SAM modification target peptide, selenobiotic family


Domain annotation for each model (and alignments):
>> TIGR04081  selen_ocin: radical SAM modification target peptide, selenobiotic family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   2.3   4.7e-06     0.019      15      37 .]       9      29 ..       6      29 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.7e-06
  TIGR04081 15 iAaLvaGagLaaPgpAlGaSGcg 37
               +A+Lva+a++ aP+++  aS+++
   MMETSP1061-20121228|51_1  9 LASLVASASAFAPQQP--ASSQS 29
               8***************..88865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1046.14
//
Query:       MMETSP1061-20121228|49_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0069   13.2   0.0       0.01   12.6   0.0    1.2  1  TIGR01822 2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
  ------ inclusion threshold ------
      0.026   11.4   0.0      0.041   10.7   0.0    1.2  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein


Domain annotation for each model (and alignments):
>> TIGR01822  2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0     5e-06      0.01     191     316 ..     208     333 ..     182     346 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5e-06
  TIGR01822 191 eicalaekydalvlvdechatGflGatGrGsaelldvldkvdiitgtlGkalGGasGG...fttakkevvellrqrsrpylfsnslapavvgasikvlelleasnel.rdklventryfreklea.aGfdv 316
                + +++a++ ++l+++d +h +G++      + e+   ++  di+t+t  k+l G   G   f   ++   +l+ q   p l       ++ g + +  e+l+   ++  +++++n+  + ++l++  G+++
   MMETSP1061-20121228|49_1 208 KFREIADANGSLLMMDMAHISGLVA-----TGEQSSPFEYCDIVTTTTHKSLRGPRAGmifFRKDERGFENLINQAVFPALQGGPHEHQIAGIATQLKEVLTPEFKVySQQVKANAAALANRLSSkYGYKM 333
                56789*****************995.....4578889999**************99993333344455778889999999998888888888888888888876655256777888888887765246665 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     2e-05     0.041     160     221 ..     210     274 ..     205     278 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2e-05
  TIGR01977 160 aelakekgilflvDaaqtaGvleidvekl...aidllaftGHKgLlgpqGiggllikekiklkpl 221
                 e+a ++g+l+++D+a   G++    + +     d++  t HK+L gp     ++ k+++  ++l
   MMETSP1061-20121228|49_1 210 REIADANGSLLMMDMAHISGLVATGEQSSpfeYCDIVTTTTHKSLRGPRAGMIFFRKDERGFENL 274
                5899******************9988775111568899**********99889999999888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.25s 00:00:00.51 Elapsed: 00:00:00.45
# Mc/sec: 1384.42
//
Query:       MMETSP1061-20121228|55_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|63_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 690.64
//
Query:       MMETSP1061-20121228|61_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       352  (0.0858118); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.25s 00:00:00.53 Elapsed: 00:00:00.56
# Mc/sec: 796.65
//
Query:       MMETSP1061-20121228|56_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.25s 00:00:00.51 Elapsed: 00:00:00.63
# Mc/sec: 1014.01
//
Query:       MMETSP1061-20121228|74_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 488.85
//
Query:       MMETSP1061-20121228|76_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.23s 00:00:00.34 Elapsed: 00:00:00.43
# Mc/sec: 187.24
//
Query:       MMETSP1061-20121228|70_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   15.6   0.0      0.007   14.4   0.0    1.6  2  TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit


Domain annotation for each model (and alignments):
>> TIGR02378  nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.7e-06     0.007      26      82 ..      64     116 ..      38     119 .. 0.79
   2 ?   -2.4   0.0      0.28   1.2e+03      89     104 ..     137     152 ..     134     153 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.7e-06
  TIGR02378  26 lAiFrvkkkevyAiqnlcPhkrafvlsrGlvgdaegelvvacPlhkrkfeLedGkcl 82 
                + i   +k +vyA+ + cP     +ls G v+d+    ++  P+   kf+L++G+++
   MMETSP1061-20121228|70_1  64 ICIAVDPKGSVYALGDKCPPV-NQPLSFGKVNDDG---TIQDPVLGTKFDLKTGEVV 116
                4454556778*********99.89**********9...9***************986 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.28
  TIGR02378  89 vktfevrvedgrvlvk 104
                v t++v+    ++ v+
   MMETSP1061-20121228|70_1 137 VPTYPVKKSGKNIDVQ 152
                7899999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.24s 00:00:00.38 Elapsed: 00:00:00.47
# Mc/sec: 508.30
//
Query:       MMETSP1061-20121228|77_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 774.10
//
Query:       MMETSP1061-20121228|79_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 521.67
//
Query:       MMETSP1061-20121228|80_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-88  293.8   0.0    1.3e-88  293.5   0.0    1.1  1  TIGR01012 Sa_S2_E_A: ribosomal protein S2
    3.6e-21   73.3   0.0    4.7e-12   43.5   0.0    2.2  2  TIGR01011 rpsB_bact: ribosomal protein S2


Domain annotation for each model (and alignments):
>> TIGR01012  Sa_S2_E_A: ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.5   0.0   6.2e-92   1.3e-88       2     195 ..      13     207 ..      12     208 .. 0.99

  Alignments for each domain:
  == domain 1    score: 293.5 bits;  conditional E-value: 6.2e-92
  TIGR01012   2 klvpvdkylaagvhlGtqnktkdmekfiykvrsdGlyvldlrktderlklaakflaaie.PedilvvsariygqkpvkkfakvtGakaiaGrfiPGtltnpalkefvePevvvvtdPrvdkqalkeasevgiPivalvdtdnslrfvdlviPannkGkkslaliywllareilknrGvisaeeklevsveeflar 195
                k+++++++l+agvh Gt+n +  me++i+++r+dG+++l++ kt+e+l laa++++aie Ped++++sar yg+++v kfa++tGa+++aGrf+PGt+tn+++k+f+eP+++v+tdPr+d qa++eas+v++P++a++d+d++l++vd++iPannkGk s++l+ywllareil+ rG +s++++++v v++f++r
   MMETSP1061-20121228|80_1  13 KEEDIQMMLSAGVHTGTRNSDSAMEEYIWRRRNDGVHILNIGKTWEKLMLAARVIVAIEtPEDVIAISARPYGMRAVLKFAQYTGAQSLAGRFTPGTFTNQITKQFREPRLLVITDPRTDSQAVREASYVNLPVIAFCDSDSPLQYVDVAIPANNKGKYSIGLMYWLLAREILRLRGSVSRNSDWDVPVDLFFHR 207
                67899*******************************************************************************************************************************************************************************************998 PP

>> TIGR01011  rpsB_bact: ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   1.2e-10   2.4e-07       4     104 ..      17     115 ..      16     119 .. 0.90
   2 !   43.5   0.0   2.3e-15   4.7e-12     154     220 ..     119     185 ..     113     189 .. 0.93

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.2e-10
  TIGR01011   4 lkelleagvhfGhqtrrwnPkmkkfifeer.ngvhiidLektlqllkeayelvkevvkeekkilFvgtkkqakeivkeeakrvgvayvneRWlGGmLtnfkt 104
                ++ +l+agvh G  tr  +  m+++i+  r +gvhi+++ kt ++l  a  ++   +++ ++++ ++ + +  ++v + a+ +g+  ++ R+  G+ tn  t
   MMETSP1061-20121228|80_1  17 IQMMLSAGVHTG--TRNSDSAMEEYIWRRRnDGVHILNIGKTWEKLMLAARVIVA-IETPEDVIAISARPYGMRAVLKFAQYTGAQSLAGRFTPGTFTNQIT 115
                67799******9..577799**********678****************998875.67778999***********************************766 PP

  == domain 2    score: 43.5 bits;  conditional E-value: 2.3e-15
  TIGR01011 154 klPdllvvidtkkekiavaearklkiPvvalvdtncdPdlvdyviPgnddairsikLlvklladavl 220
                + P llv+ d++ +  av+ea  +++Pv+a +d+++  + vd+ iP+n++   si L+  lla  +l
   MMETSP1061-20121228|80_1 119 REPRLLVITDPRTDSQAVREASYVNLPVIAFCDSDSPLQYVDVAIPANNKGKYSIGLMYWLLAREIL 185
                5699******************************************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.54
# Mc/sec: 689.28
//
Query:       MMETSP1061-20121228|84_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.73
# Mc/sec: 446.59
//
Query:       MMETSP1061-20121228|85_1  [L=1577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.46    7.2   0.0        0.7    6.6   0.0    1.2  1  TIGR03663 TIGR03663: TIGR03663 family protein


Domain annotation for each model (and alignments):
>> TIGR03663  TIGR03663: TIGR03663 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0   0.00017       0.7      24      53 ..    1316    1345 ..    1309    1352 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00017
  TIGR03663   24 lhhDEaihasftlklletGeysYdPiyHGP 53  
                 +hh E  +  + l+  + G+ysY+ ++ GP
   MMETSP1061-20121228|85_1 1316 AHHQEVGVLEWQLRQTHAGKYSYRQMIFGP 1345
                 79***************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       311  (0.0758167); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.23u 0.48s 00:00:01.71 Elapsed: 00:00:01.30
# Mc/sec: 1601.13
//
Query:       MMETSP1061-20121228|86_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|89_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    9.5  55.4       0.12    9.4  38.4    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4  38.4   2.9e-05      0.12     183     228 ..       1      50 [.       1      51 [] 0.57

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 2.9e-05
  TIGR02794 183 kkkaeaeak.KakaeaeaKakae.eakaKaeae..AkaKAeaeAkaKaea 228
                kkkae+ea+ Ka+aeaeaK+kae ea+aKa+ae  Ak+KAe+eA+aKa+a
   MMETSP1061-20121228|89_1   1 KKKAEEEAAaKAAAEAEAKKKAEeEAAAKAAAEaeAKKKAEEEAAAKAAA 50 
                46666666666666666666666655555554444666666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       373  (0.0909313); expected 82.0 (0.02)
Passed bias filter:                      198  (0.0482691); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 177.14
//
Query:       MMETSP1061-20121228|91_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 439.96
//
Query:       MMETSP1061-20121228|95_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         7  (0.00170648); expected 82.0 (0.02)
Passed bias filter:                        7  (0.00170648); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 280.48
//
Query:       MMETSP1061-20121228|93_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.53
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|94_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.25s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 1759.85
//
Query:       MMETSP1061-20121228|97_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1215.21
//
Query:       MMETSP1061-20121228|98_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 2402.20
//
Query:       MMETSP1061-20121228|102_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-07   28.5   3.9     0.0041   14.7   0.1    3.0  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.3e-06    0.0052      15      26 .]      96     107 ..      93     107 .. 0.84
   2 !   14.7   0.1     1e-06    0.0041      16      26 .]     122     132 ..     119     132 .. 0.94
   3 ?   -2.9   0.1      0.32   1.3e+03       1       9 [.     133     141 ..     133     142 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.3e-06
  TIGR02167  15 nfdTsnVTnMss 26 
                 +d+s+VT+Ms+
  MMETSP1061-20121228|102_1  96 CWDVSEVTDMSG 107
                5*********96 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1e-06
  TIGR02167  16 fdTsnVTnMss 26 
                +d+s+VT+Ms+
  MMETSP1061-20121228|102_1 122 WDVSSVTDMSE 132
                *********96 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.32
  TIGR02167   1 MFsgCssLt 9  
                MF + +s++
  MMETSP1061-20121228|102_1 133 MFLEATSFN 141
                898888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 733.27
//
Query:       MMETSP1061-20121228|103_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.46
# Mc/sec: 111.90
//
Query:       MMETSP1061-20121228|104_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-15   55.1   2.8    1.7e-09   35.2   0.0    2.0  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   4.1e-13   1.7e-09      19      69 ..       1      48 [.       1      55 [. 0.92
   2 !   20.2   0.6   1.5e-08   6.2e-05       1      33 [.      59      91 ..      59      92 .] 0.96

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 4.1e-13
  TIGR00601 19 pdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdf 69
               p++t+ ++K+ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +  
  MMETSP1061-20121228|104_1  1 PSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 48
               89***************...**************************98765 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.5e-08
  TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiese 33
               +++ +Ktl ++++++d+ep++t+ ++K+ki+++
  MMETSP1061-20121228|104_1 59 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDK 91
               8999**************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1061-20121228|106_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   15.1   0.3        1.4    7.1   0.0    3.7  4  TIGR00756 PPR: pentatricopeptide repeat domain
     0.0081   13.5   0.0      0.046   11.1   0.0    2.1  2  TIGR02410 carnitine_TMLD: trimethyllysine dioxygenase


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.67   1.4e+03      11      31 ..     128     148 ..     128     150 .. 0.85
   2 !    7.1   0.0   0.00067       1.4       2      25 ..     243     266 ..     242     269 .. 0.91
   3 ?    3.3   0.0     0.011        22       2      13 ..     279     290 ..     278     307 .. 0.69
   4 ?   -1.7   0.0      0.44     9e+02       3      15 ..     334     346 ..     334     348 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.67
  TIGR00756  11 ckagrveeAlelfdeMkergi 31 
                c+ +++  A+e ++  ++++i
  MMETSP1061-20121228|106_1 128 CRTNDLASAMEAYEGAIRDNI 148
                899999*****9998887776 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00067
  TIGR00756   2 tyntlisglckagrveeAlelfde 25 
                +y+++++ l+k+++++ A+e++ e
  MMETSP1061-20121228|106_1 243 AYSAIVKILSKNKEFSRAEEILTE 266
                69******************9865 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.011
  TIGR00756   2 tyntlisglcka 13 
                 y +l++++c+ 
  MMETSP1061-20121228|106_1 279 LYASLLHAYCRG 290
                599*******95 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.44
  TIGR00756   3 yntlisglckagr 15 
                y +li++ ++a++
  MMETSP1061-20121228|106_1 334 YLALIRCAVRAKD 346
                668*******987 PP

>> TIGR02410  carnitine_TMLD: trimethyllysine dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.12   2.4e+02     191     226 ..     274     309 ..     269     316 .. 0.90
   2 !   11.1   0.0   2.2e-05     0.046      37      80 ..     652     695 ..     640     717 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.12
  TIGR02410 191 tpGlqlFHlLkhdgtGGetvlvDvfkvaeklkkkap 226
                 p l l+  L h+   G+ ++ ++ k+  +l+++a+
  MMETSP1061-20121228|106_1 274 KPKLRLYASLLHAYCRGDGQIANALKCWRRLRQRAT 309
                5789999*************************9986 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 2.2e-05
  TIGR02410  37 akkeaeveidedelrvkWkDgHvskfeedwlvrhsyepkkekkk 80 
                + +++++++   +++++WkD H+ +f+  +lv+ sy+++     
  MMETSP1061-20121228|106_1 652 EMRDHHFQMLAPKFFLRWKDRHQVRFDFGNLVEGSYSNPALDRP 695
                55667778888899**********************99876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.24s 00:00:00.67 Elapsed: 00:00:00.48
# Mc/sec: 2070.58
//
Query:       MMETSP1061-20121228|99_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 1190.60
//
Query:       MMETSP1061-20121228|109_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-20   68.5   0.0    2.6e-15   53.7   0.0    2.1  2  TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific
    4.4e-19   66.5   0.0    9.4e-19   65.4   0.0    1.5  1  TIGR03990 Arch_GlmM: phosphoglucosamine mutase
    4.7e-09   33.3   0.0    4.2e-06   23.5   0.0    2.3  2  TIGR01455 glmM: phosphoglucosamine mutase


Domain annotation for each model (and alignments):
>> TIGR01132  pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   1.9e-18   2.6e-15      77     228 ..     105     264 ..      39     290 .. 0.78
   2 !   12.8   0.0   4.7e-06    0.0064     300     487 ..     347     550 ..     340     561 .. 0.64

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 1.9e-18
  TIGR01132  77 itGplyiGkdthalsepafvsvlevlaanqvevivqennrytptpavshailtynkgkkealad.Givitpshnp...pedGGikynppnGGpaetevtkaiedranellk.drlkgvkrldlekalkse.......tvkekdlvkpyvddladvvdlaairka 228
                +   l +  d   + + a + +  vla n+ve i   +++   tpavs ai t +     + ad Gi++t shnp    ed Gikyn   G pa  e t+a+ +r+ e+ +   ++g   +d++ a  ++       tv   d  ++yvd l +  d++air+ 
  MMETSP1061-20121228|109_1 105 VPKTLIVAGDGRYFNKEAIQKICRVLAGNGVENIWVPTSGIMSTPAVSAAIRTREG----GSADgGIILTASHNPggpGEDFGIKYNEFYGQPAGEEFTDALYERSLEISRfMTVEGSSEIDVDAAAGTTfslsptsTVTIIDPFTEYVDVLQQSFDFDAIREF 264
                45567788899999999**********************************88655....55652799******74425899************************99875245678889999988754322222126777888999**************985 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 4.7e-06
  TIGR01132 300 lafgndadadrhGivtpdkGllnpnhylavaiey..lykhrqqwaaevavGktlvssalidrvvadlgrklvevpvGfkwfvdGlldgslGf.........GGeesaGasflrkdGtvwstdkdGiilallaaeitavtGkn.....pqqrydelaa....kyGdpiyarid..aaatsaqkarlkklspdevsa..ttlaGdaitakltka 487
                l  +nd d+dr  i      ++ p   la+  +      h ++ ++   v +++ ssa +d v+  l+   ++ p G+k+f + l++++  f          Gees G+      Gt    +kdG+   l    i+  + k+     p  + +++      kyG  +y r d  a+a+ +  +++  +  + vs   ++l+ d+   +lt+a
  MMETSP1061-20121228|109_1 347 LGAANDGDGDRNLIAGA-GCFVTPSDSLAMICDNwkAIPHFEKAGGPKGVARSMPSSAALDVVAEALDIPYFNTPTGWKFFGN-LMGSKEQFdktdytpflCGEESFGT------GTDHIREKDGLWAMLAWISILIDANKDtpegaPLVQVKDIVMnhwiKYGRHFYCRYDyeAVASDSANKMMDLIRDEFVSGdlSSLSEDSSGIQLTAA 550
                6689*******988877.7899******98765411567888899999*******************************9965.5554444411111111256666543......4555555555544433333333333321111133444444422233789999988763255555555555666666666422567777777777766 PP

>> TIGR03990  Arch_GlmM: phosphoglucosamine mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   0.0   6.9e-22   9.4e-19      32     349 ..     103     475 ..      61     491 .. 0.71

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 6.9e-22
  TIGR03990  32 vlekkkvvvgrDtRtsgellenaviagllstGvd...VvdlglvptPtlqyavkeeg...adaGimiTASHNP...peyNgiKll....nsdGvelsre...eeeeieeilekeefelaewdevg.........kvkeeedalekyieailkkvdveaik....kkklkVvvDcgngagslvtpell.relgvk.vitlnaepdGtFpgrnpEPteenLkelsklvketgad...............lgiahDgDaDRlvlvdekgefieedktlallakal.....lekkk.ggkvvtnvssSravedvleeagvevirtkvGevnvaeklkeega.........vfGgEgnGgvifpelqlvrDgllaaalllella 349
                    k+ +v+ D R   +   + + + l+  Gv+   V + g+++tP++++a+++ +   ad+Gi++TASHNP    e+ giK      ++ G+e++++   ++ ei + ++ e  ++ ++d+           ++ +  d  ++y++ + +++d +ai+    + +++++ D  +gag+ ++ ++l + lg      + ++p + F + +p+P   nL+  ++lvk+ g +               lg a DgD+DR ++    g f++   +la++++       +ek + ++ v+ ++ sS a++ v+e+ ++ +  t+ G  +  + + ++++         ++G E  G+    ++   +Dgl a++  +++l 
  MMETSP1061-20121228|109_1 103 GEVPKTLIVAGDGRYFNKEAIQKICRVLAGNGVEniwVPTSGIMSTPAVSAAIRTREggsADGGIILTASHNPggpGEDFGIKYNefygQPAGEEFTDAlyeRSLEISRFMTVEGSSEIDVDAAAgttfslsptSTVTIIDPFTEYVDVLQQSFDFDAIRefakRPEFSILFDGMHGAGGPFARRILvEMLGFPeSSLMRCDPRPDFGKCHPDP---NLTYAADLVKKMGLKpdgsedestvssaptLGAANDGDGDRNLIAG-AGCFVTPSDSLAMICDNWkaiphFEKAGgPKGVARSMPSSAALDVVAEALDIPYFNTPTGWKFFGNLMGSKEQfdktdytpfLCGEESFGT--GTDHIREKDGLWAMLAWISILI 475
                2257899*******999988899999******984445567***********998744449***********733369*****862222578999998621145678888888877777777664232212111112234455788888888999888862222579*************99888762678998688899********999999...678888888888877778888999999999***********87655.5666655555555554432444445444367899**************************9988888877665333344442344444453..4566666777777766666665 PP

>> TIGR01455  glmM: phosphoglucosamine mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     3e-09   4.2e-06      60     120 ..     131     197 ..      97     230 .. 0.71
   2 !    7.3   0.0   0.00025      0.35     230     308 ..     344     425 ..     336     450 .. 0.69

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 3e-09
  TIGR01455  60 aGLtsaGvevlklGvlptPavayltralr...adaGvvisashnP...yeDnGiklFgaeGlkldde 120
                aG   + + v + G+++tPav+  +r+ +   ad G+++ ashnP    eD Gik+ +  G+   +e
  MMETSP1061-20121228|109_1 131 AGNGVENIWVPTSGIMSTPAVSAAIRTREggsADGGIILTASHNPggpGEDFGIKYNEFYGQPAGEE 197
                4444444456678********998887633349***********733369*****877666654444 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00025
  TIGR01455 230 eadlGlafDGDaDRvlavDekGdivdGDkillllakalkesgeLken....tvvatvmsnlglekaleklglklartavGDry 308
                   lG a DGD+DR l+  + G  v   + l+++  ++k+  ++++     +v   + s  +l+   e l ++ + t  G ++
  MMETSP1061-20121228|109_1 344 APTLGAANDGDGDRNLIAGA-GCFVTPSDSLAMICDNWKAIPHFEKAggpkGVARSMPSSAALDVVAEALDIPYFNTPTGWKF 425
                5679***********99876.56666555566666777766665543112134455556677777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.22s 00:00:00.63 Elapsed: 00:00:00.45
# Mc/sec: 1891.84
//
Query:       MMETSP1061-20121228|118_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.38
# Mc/sec: 152.83
//
Query:       MMETSP1061-20121228|117_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1036.50
//
Query:       MMETSP1061-20121228|119_1  [L=1408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1661.5   0.0          0 1661.4   0.0    1.0  1  TIGR02025 BchH: magnesium chelatase, H subunit
   8.1e-183  608.0   0.0   1.1e-182  607.6   0.0    1.1  1  TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit


Domain annotation for each model (and alignments):
>> TIGR02025  BchH: magnesium chelatase, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1661.4   0.0         0         0       1    1271 []      92    1408 .]      92    1408 .] 0.97

  Alignments for each domain:
  == domain 1    score: 1661.4 bits;  conditional E-value: 0
  TIGR02025    1 lrvvlvvleeqlnaalsraaaelnr.eldlaadleivaleelkekekleevekaikeadllfvsllfledqvrklkevlseer.qvkavvvvesapelmkltklGsfala.kseeksgilkllkkladlvkkeeedklaaqlkllktvpkllkfiPgekaqDlrnyllvyqyWlngskenlanlllllvdkYlaselg.......vkveapveypdiglyHPdakk.lfetekeykewkkkre....gvkaekagrvgllllRkhllaenkahidnlirelEakglqvvpafakGldfrkaveeflmkdsteakkvDavvsltgFsLvGGPAesdeaaakeiLkkldvPylvaiPllfqtieeWkaselGlaplqvalsvaiPElDGaiepvilgglegeagkviaveerlealaervkrlvrLRkksnaekkvaivvfsfPPdkGnvgtAAyLdvfesllellkklkdeGYdveelPesveeLieavledeeeqlksadenvaarieveqkekltpelerieeqWgkapGellkdgdellilGaqlGnvfigvqPslGyegDPmrLlferdaaPhhafaafYrwldkefkAdAllHfGtHGslEfmPGkqvGlsgecwpdrLlgdlPnlYlYavnnPsEatiAkRRglatlvsylvPPlerAGLYkelreLkeliaeyrekke.e.egaeileaiikkaeeleLdkdvpeik..........qeqaeefvkrlyiklleleerliplgLhvlGeapsaeelvdtlvelvsldre...ersLpelvletlgknleeie.......leeieslekvteaaavavkrlveealeelergs.faekle.............keelekvlaksklpeldkekldrlleeleailkllledeElegllkaLeGeyippaPGgDlvRdpevlPtGrniHalDPyriPseaAvkagkrvadkllekkraeesgeyPEsiAvvlWGtDniktkGesvaqvlallGaepvkdelGriakveLiPLeklGrPRiDvvvtlsgiFRDllsnqielLdeavklAAeAdEPeemnfvrkHalaqaeelgidveeAaaRvfsnapGsygsnvndlvedsaWeeeeeLadtfikRksfaygkeekg..ekkpeilqslLktvdlvfqnvDsvElgltdidhYyeslggvskaverakgkkatavyvedttkkakakvreleelvrleaRtklLnPkWyegmlehGyeGvreiskrltntlGWsataeavddWvYdqltetyilDeemrerlaelnpealrkivsrllEasgRglWeadeeklekLqelyeeledrlEGv 1271
                 ++vv+vvle+q+++++s+a++ +n  + ++a +   ++leel++ + +e+++k++++a+++++sl+f+++ ++k+++v++  r +++a +++ s+pe+m+l+k+Gsf ++  +++ks + +++kk+++   +++++ ++++lkll+t+pk+lkf+P++ka D+r++++++qyWl+gs+en++ ll ++ + Y++  ++       ++ ++pv  pd +++HP a + +fet  +y  w+++      g+  ++a++vg+ll+++h+ +++++h+++li+elE++g++vvp++++Gld++ +v+++++++  + ++vD++v+ltgF+L+GGPA++d+++a ++Lk+l+vPyl+a+Pl+fq++eeW++selGl+p+qval+v++PE+DGaiepvi++g+eg++g+ +++ +r++ la+r+ ++++L++k++++kk+ai++fsfPPdkGnvgtAAyLdvf+s+  +lk+lk eGYd+++ P  +ee++eavl+d e+ ++s ++nv+ r++ e++  ltp+ + +ee+Wg apG+l++dg++l ++G+++GnvfigvqPs+GyegDPmrLlf+++a+Phh+faa+Y++l+k f+AdA+lHfGtHGslEfmPGkqvG+sg+c+pdrL+ +lP  YlYa+nnPsEatiAkRR+++++vsyl+PP+e+AGLYk+l+eLkeli++yr  +e e +g  i++ i++   +++Ldkdv+ ++           e+++++v+++y++++++e+rl+p+gLh +G +p+aee+v+tlv++ +ldr+   ++ Lp +++ ++g+++++++       l +++   ++teaa++a ++lv++ ++ + r+  + +                k+++++ + k++ p++++e l+ ++++le++lk++++++El g++  L+G++++paPGgD++R+p+vlPtGrn+HalDP +iP++aAv+ ++ v++kllek + e++g++PEsiA  lWGtDnikt+Ges+aqvl l+G++pv d+lGr++kveLiPLeklGrPRiDvvv +sg+FRDl++nq++l+d+ +k+AAeAdEP+emnfvrkHa++ aeel+++++eAa Rvfsn++Gsy++nv  ++e++ We ee+L++ f+ Rk+fa++ ++ g  e+++++++s+Lk+vd +fqn+Ds+E+++td++hYy+s++++     r++  k++ ++++dtt +a+a+vr+l+e+vrl+aRtklLnPk+yegml+ GyeGvrei+krl nt+GWsata+ vd++v++++++t+i+D em++rl + np+a+r++v+++lEa+gRg+W++++e++e+Lqely+e+edr+EGv
  MMETSP1061-20121228|119_1   92 MKVVYVVLESQYQSSMSAAVKRINAaNPNMAVECVGYLLEELRNDDAYEQFKKDVEDANIFIGSLIFVQELAEKVVDVVQPARdNLDACLIFPSMPEVMRLNKVGSFTMKnLGQSKSVVSDFMKKKKQ---EDGSSFEEGMLKLLRTLPKVLKFLPSDKAADARTFMMSFQYWLGGSPENIESLLKMVGQDYVTDIAKgmegkekMEAAEPVLLPDKAIWHPVAPDvVFETYGDYMRWYNNEFcpdaGIDVKTAPTVGILLQKSHINTKDDTHYVSLIAELESRGARVVPVYSGGLDYSGPVNDYFKDANGK-VIVDTIVNLTGFALIGGPASQDHKKAAKVLKDLNVPYLCAVPLVFQSFEEWQSSELGLHPIQVALQVSLPEIDGAIEPVIFAGREGATGRSVPLADRVNLLADRSLKWANLKNKEKKDKKIAITIFSFPPDKGNVGTAAYLDVFDSIQAVLKQLKSEGYDIGDAPLKKEEIMEAVLNDPEARISSPELNVEYRMSTEEYYDLTPYATDLEENWGPAPGNLNSDGKNLVVYGKKFGNVFIGVQPSFGYEGDPMRLLFAKSASPHHGFAAYYTYLEKIFEADAVLHFGTHGSLEFMPGKQVGMSGTCYPDRLINTLPSAYLYAANNPSEATIAKRRSYSATVSYLTPPAENAGLYKGLKELKELIESYRGLREnEgRGPAIVNSIVSTSYTCNLDKDVDLPDletydasadtRERRDDIVGQIYAQIMQIESRLLPCGLHTVGVPPTAEEAVATLVNIGQLDRPedgIEGLPRVIAASVGRDINDVYrgnnqgiLGDVDLNTQITEAARAATRALVDQSTDGYGRVKeV-KSAFadvgnmfnkmvgkKKPWTEAIIKAGFPNVEEERLEGVMQYLEFCLKQVVANNELGGIMELLNGNFLMPAPGGDPIRNPDVLPTGRNMHALDPSAIPTQAAVEVAESVTNKLLEKLKDENDGQFPESIAFTLWGTDNIKTYGESLAQVLSLVGVRPVADSLGRVNKVELIPLEKLGRPRIDVVVSCSGVFRDLFINQMNLMDRGIKMAAEADEPLEMNFVRKHAMESAEELNVSLREAACRVFSNSAGSYSANVGLAIENGGWEGEEQLQEQFLTRKGFAFNADKPGmmEQQSDLFKSALKKVDVTFQNLDSSEISITDVSHYYDSDPTKVVEGLRDDK-KKPMSLMADTT-TANAQVRTLSETVRLDARTKLLNPKFYEGMLSTGYEGVREIQKRLRNTMGWSATAGEVDNFVFEDANDTFINDAEMQQRLLDTNPNAFRDMVTTFLEANGRGYWDTSDENIERLQELYAEVEDRIEGV 1408
                 79**********************95667889999************************************************9**************************899************998...99999********************************************************976555577888889999************9975379***********9988888999999*****************************************************996555.9*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************999447999********************99999*****999999************************************************999999****************9999999999999999******************9988887743.3322368899******999*****************************************************************************************************************************************************************************************************************************************************************************9977899*************************************9999999887.9**********.9999***************************************************************************************************************************8 PP

>> TIGR02257  cobalto_cobN: cobaltochelatase, CobN subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  607.6   0.0  5.1e-186  1.1e-182     169    1225 ..     297    1402 ..     228    1403 .. 0.83

  Alignments for each domain:
  == domain 1    score: 607.6 bits;  conditional E-value: 5.1e-186
  TIGR02257  169 veakaikkagladPlrgeikkek......................lakvGilfYralllagdtaliealidaLrqrglrplpvfvssLkdke.vlaevldllkeekvevvltttaFas....skeeadegetlldsldvPvlqvl.vsnksreeWedssrGleprDLalqvvlPelDgRiltravsFkevsevdekleskvvaykpdedrikfvadlaanwiklqrkekaerkialvlanYPvrdGRigngvGLdtPasvvellkalkeeGYdlgekplPkngdaLiklllkgrtnslesedrepleklsldeylkffeklpkkakeeivarwgepsqdpdledkkgfaiaglrfGnivvliqPdRGydadkkadyhsPdLaPphrylafylwlrkvfgadalvhvGkhGtleWLPGksvaLseeCfPeivlgplPhiYPFivndPGegaqakRRtqavildhLtPPLtraelygklkkLeelvdeyyeaklldsrRlevlekqilelvkdedldeeisvke..........sdkldsilekldayLCdLkesqirdGLhifGrapegrkltdlllalar..vPtskkkGltralardlgle...............ldPlaadegeslseadkailadlskaklrtlgdtlealeeqaaslvekllrkeqakdeaaaire........vlekikeellpsilk.steaekasllkaleGryvaaGpsGaPsRGrsdvLPtGrnfysvDlRalPteaawdlgkksaeelierylqe.hGealrklalsvWgtatmRtGGediaqaLallGvrPvWdaasrrvvdleviPlslLgRPRvDvtlRisGlFRDaFpnlialvdkavqavaeldedeelnplaarvraee........kassRifGskPgaYGaglqelieekaWeekedlaeaylkwssyaYgageegiaar..ealeerlkkiqvvlhnqDnrehDlLdsddyyqFqGGlsaaveklsGkrpeiyfgDhsrkekpkirkleeeldrvvRaRvvnpkwieGmkrhGykGafelaatvDylfaydatteavsdwlyeaiadaylldeevkeFlieknPaalrdlaeRlleaanRelWqeakeeileelkklileae 1225
                  e+  ++  ++++P++ ++  e                        ++vGil+ ++++++ d     +li +L++rg r +pv+   L  +  v    +d+  +  v+ +++ t+Fa     ++++ ++  ++l+ l+vP l  + +  +s eeW++s+ Gl+p  +alqv lPe+Dg i   +v F +          +  +  p  dr++ +ad++ +w++l++kek+++kia+ +  +P  +G +g +  Ld+ +s+ ++lk+lk+eGYd+g+   P + +++++ +l+  +  + s + ++ +++s +ey ++         + ++++wg +  + + +d+k++ + g +fGn+++++qP+ Gy+ d+ + + +    P h++ a+y +l+k f+ada++h G hG+le++PGk v++s +C+P+ ++ +lP  Y +  n+P e++ akRR+ + ++ +LtPP + a+ly++lk+L+el++ y   ++ ++ R   + ++i+++    +ld+++ + +          +++ d+i+ ++ a + ++    +  GLh  G  p  ++ + +l+ + +   P++  +Gl r++a+ +g +               +d  +++ +e+   a +  l d+s++ + ++++  +a  + +++  +k+++k++   ++a i++         le + + l   +++  +++e  ++++ l+G ++ + p G P R ++dvLPtGrn+++ D  a+Pt+aa ++++   ++l+e+ + e +G++++++a+++Wgt +++t Ge +aq+L+l+GvrPv d+   rv  +e+iPl+ LgRPR+Dv++  sG+FRD F n+++l+d+ +++ ae de+ e n + ++  +          +a  R+f  + g+Y a +  +ie++ We +e+l e +l+   +a++a + g+ ++  + ++ +lkk++v  +n D  e  + d + yy       +   +   k+p   + D++   ++++r+l+e +    R++++npk+ eGm   Gy G  e+ + +   +++ at++ v+++++e + d+++ d+e+++ l++ nP a+rd+   +lea+ R+ W+ ++e+  e+l++l +e+e
  MMETSP1061-20121228|119_1  297 AEPVLLPDKAIWHPVAPDVVFETygdymrwynnefcpdagidvktAPTVGILLQKSHINTKDDTHYVSLIAELESRGARVVPVYSGGLDYSGpVNDYFKDANGKVIVDTIVNLTGFALiggpASQDHKKAAKVLKDLNVPYLCAVpLVFQSFEEWQSSELGLHPIQVALQVSLPEIDGAIE--PVIFAGRE-------GATGRSVPLADRVNLLADRSLKWANLKNKEKKDKKIAITIFSFPPDKGNVGTAAYLDVFDSIQAVLKQLKSEGYDIGD--APLKKEEIMEAVLNDPEARISSPELNVEYRMSTEEYYDLTP-----YATDLEENWGPAPGNLN-SDGKNLVVYGKKFGNVFIGVQPSFGYEGDPMRLLFAKSASPHHGFAAYYTYLEKIFEADAVLHFGTHGSLEFMPGKQVGMSGTCYPDRLINTLPSAYLYAANNPSEATIAKRRSYSATVSYLTPPAENAGLYKGLKELKELIESYRGLRE-NEGRGPAIVNSIVSTSYTCNLDKDVDLPDletydasadtRERRDDIVGQIYAQIMQIESRLLPCGLHTVGVPPTAEEAVATLVNIGQldRPEDGIEGLPRVIAASVGRDindvyrgnnqgilgdVDL-NTQITEAA-RAATRALVDQSTDGYGRVKEVKSAFADVGNM-FNKMVGKKKPW-TEAIIKAgfpnveeeRLEGVMQYLEFCLKQvVANNELGGIMELLNGNFLMPAPGGDPIR-NPDVLPTGRNMHALDPSAIPTQAAVEVAESVTNKLLEKLKDEnDGQFPESIAFTLWGTDNIKTYGESLAQVLSLVGVRPVADSL-GRVNKVELIPLEKLGRPRIDVVVSCSGVFRDLFINQMNLMDRGIKMAAEADEPLEMNFVRKHAMESAeelnvslrEAACRVFSNSAGSYSANVGLAIENGGWEGEEQLQEQFLTRKGFAFNADKPGMMEQqsDLFKSALKKVDVTFQNLDSSEISITDVSHYYDSDPTKVVEGLRDDKKKPMSLMADTTT-ANAQVRTLSETVRLDARTKLLNPKFYEGMLSTGYEGVREIQKRLRNTMGWSATAGEVDNFVFEDANDTFINDAEMQQRLLDTNPNAFRDMVTTFLEANGRGYWDTSDEN-IERLQELYAEVE 1402
                 455556666666666666666666666666666676666666666899***************************************97654155566777777778889999****999886777778999********998763778999**************************995..56665433.......333456799*********************************************************************..888999****************************9987644.....34678999*98888755.5588******************************************************************************************************************************************99987666.555666666777777766666665544333222223222678899999999999999999999*****************99999652279999*************99556666666555443332.22223332.2333334444444444444444444444333.33333333322.22223335666777745555555555554414689************************.8************************************9886527************************************9975.79********************************************************998876665689****9999*******************************************9999976542268*****************************987654333333334889999999876.5689***************************************************************************************************997666.899***999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.30s 00:00:01.10 Elapsed: 00:00:00.64
# Mc/sec: 2903.76
//
Query:       MMETSP1061-20121228|123_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-05   20.4   0.0    0.00031   18.6   0.0    1.9  2  TIGR00586 mutt: mutator mutT protein
  ------ inclusion threshold ------
      0.011   13.1   0.0      0.024   12.0   0.0    1.5  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.58   1.2e+03      80     102 ..      22      44 ..      19      51 .. 0.75
   2 !   18.6   0.0   1.5e-07   0.00031       5      68 ..     303     370 ..     301     426 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.58
  TIGR00586  80 kltlyvylvrelegepfikegee 102
                 + l v lv+  ege  i++ + 
  MMETSP1061-20121228|123_1  22 SIXLPVVLVQAREGEREIERQQR 44 
                67888999999999988877654 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 1.5e-07
  TIGR00586   5 lqiavgiir...nenneifitrraad.adlanklefPGGkieaGetpeqavvrelqeevgitaqhfel 68 
                 q++vg+i     +  ++++ + +++ a   n +  P G +++ e   +a  rel ee gi+a+   +
  MMETSP1061-20121228|123_1 303 HQVGVGVILlnpSDPSQMLVVKELTGpAAKYNLWKMPTGLVDPQEYVPEAASRELLEETGIEAKMSGI 370
                6999*9996423467899999999883556799*****************************987654 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.2e-05     0.024      49      77 ..     338     366 ..     332     396 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.2e-05
  TIGR02705  49 fPGGkveegetskeaaiRevleetGaivk 77 
                 P G v+  e   eaa Re+leetG  +k
  MMETSP1061-20121228|123_1 338 MPTGLVDPQEYVPEAASRELLEETGIEAK 366
                6999*********************6554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.25s 00:00:00.56 Elapsed: 00:00:00.44
# Mc/sec: 1523.87
//
Query:       MMETSP1061-20121228|125_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.24s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 756.74
//
Query:       MMETSP1061-20121228|120_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-34  116.5   0.3    4.3e-34  116.1   0.2    1.1  1  TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit
    0.00018   19.2   0.2    0.00027   18.6   0.1    1.3  1  TIGR03321 alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B


Domain annotation for each model (and alignments):
>> TIGR01145  ATP_synt_delta: ATP synthase F1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.2   2.1e-37   4.3e-34       2     170 ..      46     216 ..      45     217 .. 0.96

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 2.1e-37
  TIGR01145   2 arpYakAlfelAeekssleevkeelnfvkevlknekelkkllsnPlisaekkkelikkvlge.qldesslnllllLverkRlaalpdileeFlklskeaeqtaevevisavalteeqqakiaeklekkl.kakkvklalkvdksligGviikigdkviDgsvrgqLkrlsr 170
                a +Ya+A +  A +  sl +v+ eln +++ + ++++++ +l+nPlis++ k++ i++ l+e +++ ++ nl   L+ + Rl+ l ++++ F +l+k+++ ++e+ +isa +lt+++ a++a+++++   +a +v +  kvd+s+igG+ ++igd+ +D s++++++++sr
  MMETSP1061-20121228|120_1  46 AARYANATYIAASKAGSLPKVESELNGLAQAASESPAFAGFLDNPLISRDAKSAQIEALLKEkNVSDITTNLCTTLAGNARLSELLKVADTFSTLMKAKRGEVEATIISADPLTKKETADVAAAIKATSqGASEVVISSKVDPSIIGGIQVQIGDQFLDLSIKSRIEEISR 216
                789*******9*************************************************984699***********************************************************987515789**********************************997 PP

>> TIGR03321  alt_F1F0_F0_B: alternate F1F0 ATPase, F0 subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.3e-07   0.00027     156     242 ..     126     215 ..      91     217 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.3e-07
  TIGR03321 156 rlrtlde.eekaalaealkesgeevlvrsafeLpeeqrekikktiretl..keeiklrfetepdlisGieltagGqklaWsvedyLesle 242
                rl++l + ++      ++k +++e+ + sa +L++++ + + ++i+ t   ++e+ ++ ++ p++i+Gi+++ g q l  s+++++e++ 
  MMETSP1061-20121228|120_1 126 RLSELLKvADTFSTLMKAKRGEVEATIISADPLTKKETADVAAAIKATSqgASEVVISSKVDPSIIGGIQVQIGDQFLDLSIKSRIEEIS 215
                5555433133334445567788899*********************99866799********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 875.93
//
Query:       MMETSP1061-20121228|124_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.24s 00:00:00.41 Elapsed: 00:00:00.48
# Mc/sec: 401.47
//
Query:       MMETSP1061-20121228|133_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.25s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 283.98
//
Query:       MMETSP1061-20121228|131_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 2135.12
//
Query:       MMETSP1061-20121228|135_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.27s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 701.63
//
Query:       MMETSP1061-20121228|140_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|134_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1707.06
//
Query:       MMETSP1061-20121228|142_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.22s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 493.89
//
Query:       MMETSP1061-20121228|132_1  [L=1099]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1099 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.21s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 3453.71
//
Query:       MMETSP1061-20121228|146_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 177.36
//
Query:       MMETSP1061-20121228|149_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.22s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1061-20121228|148_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-15   54.3   0.9     0.0016   16.0   0.0    4.3  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   2.4e-05       0.1      10      25 ..      39      54 ..      39      55 .. 0.91
   2 !   15.9   0.0   4.1e-07    0.0017      16      26 .]      70      80 ..      57      80 .. 0.74
   3 !   16.0   0.0   3.9e-07    0.0016       1      21 [.      81     100 ..      81     103 .. 0.94
   4 !    8.1   0.0   0.00011      0.47       2      21 ..     107     125 .]     107     125 .] 0.92

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.4e-05
  TIGR02167 10 sLDlSnfdTsnVTnMs 25
               sL++  +dTs V nM+
  MMETSP1061-20121228|148_1 39 SLPINCWDTSAVDNMY 54
               799999*********7 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 4.1e-07
  TIGR02167 16 fdTsnVTnMss 26
               +dTs+VT M s
  MMETSP1061-20121228|148_1 70 WDTSSVTHMES 80
               *********85 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 3.9e-07
  TIGR02167   1 MFsgCssLtsLDlSnfdTsnV 21 
                MF+g +s+++ ++ +++T nV
  MMETSP1061-20121228|148_1  81 MFQGAESFNQ-PIGSWNTQNV 100
                **********.*********9 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.00011
  TIGR02167   2 FsgCssLtsLDlSnfdTsnV 21 
                F g s++++ ++ +++T +V
  MMETSP1061-20121228|148_1 107 FDGASAFNQ-PIGSWNTQKV 125
                889999999.*******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 611.06
//
Query:       MMETSP1061-20121228|150_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.25s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 642.11
//
Query:       MMETSP1061-20121228|144_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-38  130.4   0.6    1.9e-38  130.1   0.4    1.1  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase
     0.0014   15.7   0.4     0.0017   15.4   0.3    1.0  1  TIGR04148 GG_samocin_CFB: radical SAM peptide maturase, GG-Bacteroidales family


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.1   0.4   9.1e-42   1.9e-38      23     153 .]       6     150 ..       2     150 .. 0.92

  Alignments for each domain:
  == domain 1    score: 130.1 bits;  conditional E-value: 9.1e-42
  TIGR00401  23 vektkvGyln...gktenPtyeevCsgdtghaevvkveydpkvvs....leeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqe.......sakykkkivteiekaenfyeaeeyhqqylkknPkgyc 153
                + ++kvG++n     ++nP+y++vCsg+tgh+ev+++e  ++  s    +e+L+++f+  +dPtt n+qgnD+Gtqy s++++ s++++++ae+ ke+lq+       ++  +kk+ t +++ ++fyea e hq+yl+knP gyc
  MMETSP1061-20121228|144_1   6 IANAKVGFMNpdpNGMKNPSYRQVCSGSTGHVEVLNIELSEEAAStpevFEDLIKFFYMFHDPTTPNQQGNDRGTQYGSVVFVSSPDQREIAERVKEELQShmdsktiTSYQRKKVETVVADYTTFYEAHEEHQEYLAKNPLGYC 150
                78899*****887789************************999875555799************************************************98887764444567899***************************9 PP

>> TIGR04148  GG_samocin_CFB: radical SAM peptide maturase, GG-Bacteroidales family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   8.3e-07    0.0017     146     274 ..      22     154 ..      18     158 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 8.3e-07
  TIGR04148 146 kndsyRvkkegkssfekvve.nikklkkkyPeyFekkvrFnsvlhdrnsveeiyefikkefdkkpsiselntsgvapekkeefekmfkskeksskesltkesklk...kelelesdeikklkkflanysgnvy 274
                kn syR   +g   + +v++ ++++   + Pe Fe+ ++F  ++hd    ++  +   ++++ + ++s  ++ ++a+  kee++  + sk+  s +  + e+ +       e ++++ + l+k    y++++y
  MMETSP1061-20121228|144_1  22 KNPSYRQVCSGSTGHVEVLNiELSEEAASTPEVFEDLIKFFYMFHDPTTPNQQGNDRGTQYGSVVFVSSPDQREIAERVKEELQSHMDSKTITSYQRKKVETVVAdytTFYEAHEEHQEYLAKNPLGYCNHRY 154
                567788888888888887753566667789**********************9999****************************9999998777766555544332112222223333333444445666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      235  (0.0572891); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.26s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 721.54
//
Query:       MMETSP1061-20121228|151_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.23s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 239.98
//
Query:       MMETSP1061-20121228|152_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 347.57
//
Query:       MMETSP1061-20121228|143_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-89  296.0   0.0    3.6e-89  295.6   0.0    1.1  1  TIGR01020 rpsE_arch: ribosomal protein S5
    3.5e-22   76.7   0.0    6.6e-22   75.9   0.0    1.4  1  TIGR01021 rpsE_bact: ribosomal protein S5


Domain annotation for each model (and alignments):
>> TIGR01020  rpsE_arch: ribosomal protein S5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  295.6   0.0   1.7e-92   3.6e-89       3     209 ..      70     275 ..      68     277 .. 0.97

  Alignments for each domain:
  == domain 1    score: 295.6 bits;  conditional E-value: 1.7e-92
  TIGR01020   3 aeleeWePktklGrlvkegkiksideifeeslpikeseivdvllpdlneeevldvslvqkmtksGrrtrfralvvvGnkdGyvGlGkgkakevatairkaiakaklniikvrrgcGsWecklgkehsvPfkveGksGsvrvrliPaPkGvGlvagdvakkvlrlaGiedvytktkGetkttvnfakatfealkkty.lvkaaekkeek 209
                ++++ W+P+tklGrlvkegki si+eif  s p+ke ei+d++l d  ++ev+++++vqk+  +G+rtrf+a+v++G+++G++GlG+++++evatair+ai++aklni++vrr  G+W+ + g +h+vP+kv+Gk+Gsv vrliPaP+G+Glv+++ +kk++++aGi d+y+++ G+t+t++nf+ka++ al+ ty ++ ++ +ke+ 
  MMETSP1061-20121228|143_1  70 RDENVWVPVTKLGRLVKEGKIASIEEIFLFSIPVKEAEIIDYFLKDKLQDEVMKIMPVQKQSSAGQRTRFKAFVAIGDSNGHIGLGVKCSSEVATAIRGAITSAKLNIVPVRR--GYWGRTSGLPHTVPCKVTGKCGSVSVRLIPAPRGTGLVSSPAGKKLMSMAGITDCYSSSSGHTRTMGNFIKAIYYALRATYgYLSPELWKENP 275
                56788***************************************776577***************************************************************..****************************************************************************************99876 PP

>> TIGR01021  rpsE_bact: ribosomal protein S5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   3.2e-25   6.6e-22       2     138 ..     115     260 ..     114     265 .. 0.88

  Alignments for each domain:
  == domain 1    score: 75.9 bits;  conditional E-value: 3.2e-25
  TIGR01021   2 eeleervvkvnRvskvvkGGrklsfsalvvvGdkkGkvGfGvgkakevteaikkavekakknlikvel....leg....tikhevigksgaakvllkpakeGtGviaGgavravlelaGvkdilakslGsnnpi.nvvratldale 138
                ++l++ v+k+  v k    G++ +f+a+v +Gd +G++G+Gv  ++ev++ai+ a+++ak n++ v      + +    t++ +v+gk g+  v l pa +GtG+++  a + ++ +aG++d ++ s G + ++ n ++a   al+
  MMETSP1061-20121228|143_1 115 DKLQDEVMKIMPVQKQSSAGQRTRFKAFVAIGDSNGHIGLGVKCSSEVATAIRGAITSAKLNIVPVRRgywgRTSglphTVPCKVTGKCGSVSVRLIPAPRGTGLVSSPAGKKLMSMAGITDCYSSSSGHTRTMgNFIKAIYYALR 260
                7899************************************************************9975322222202235666788999999*************************************998875899*9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.23s 00:00:00.44 Elapsed: 00:00:00.56
# Mc/sec: 676.15
//
Query:       MMETSP1061-20121228|154_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-60  200.3   0.3    5.7e-60  199.7   0.2    1.2  1  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain
    7.4e-13   46.8   1.4    7.4e-13   46.8   1.0    2.7  2  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain
    2.3e-06   25.1   0.2    0.00042   17.8   0.1    3.0  2  TIGR02245 HAD_IIID1: HAD hydrolase, family IIID
  ------ inclusion threshold ------
      0.046   12.1   0.5        0.1   11.0   0.4    1.5  1  TIGR02523 type_IV_pilV: type IV pilus modification protein PilV


Domain annotation for each model (and alignments):
>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.7   0.2   5.6e-63   5.7e-60       1     166 [.     263     425 ..     263     427 .. 0.98

  Alignments for each domain:
  == domain 1    score: 199.7 bits;  conditional E-value: 5.6e-63
  TIGR02251   1 kktlvLDLDeTLvhsslkkakaieadlklevliekkiilvyVlkRPyvdeFlerlsklyelvvfTasleeYadkvldildakkkvlsrrlyRescvetngkyvKdlslvkkdlskvviiDnsplsyslqpeNaipiksfisdenDeeLlklipflealrkeddvrs 166
                kk+lvLDLDeTLvhss+++ +   ad++++v+ie+  + vyV+kRP+vdeFl +++k+ye+v++Tasl++Yad++ld ld++k v++ rl+Rescv+ +g+yvKdls++ +dlsk++iiDnsp sy ++p Nai + sfi+d++D+eL ++  fl+++r   dvr 
  MMETSP1061-20121228|154_1 263 KKCLVLDLDETLVHSSFRAVE--GADFVIPVKIEEVVHFVYVMKRPGVDEFLVEMAKYYEIVIYTASLNKYADPLLDLLDPQK-VIRYRLFRESCVFYEGNYVKDLSVLDRDLSKTIIIDNSPNSYLFHPANAIDCSSFIDDPRDRELDQIGSFLKGIRSARDVRG 425
                689******************..9********************************************************666.********************************************************************************97 PP

>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3       1.4   1.4e+03      20      45 ..     216     242 ..     210     250 .. 0.42
   2 !   46.8   1.0   7.2e-16   7.4e-13       6     151 ..     263     396 ..     260     399 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.4
  TIGR02250  20 ttkeselseeek.kkkeekeseklkdl 45 
                t ++++ + ++k ++ +e + +++kd+
  MMETSP1061-20121228|154_1 216 TDTTTKKKLTSKdTQDSEDNVDNTKDV 242
                333322222222123333333344444 PP

  == domain 2    score: 46.8 bits;  conditional E-value: 7.2e-16
  TIGR02250   6 kLvLvlDlDqtlihttkeselseeekkkkeekeseklkdlkkfkleekleylvklRPfvkeflkkvsklyelhvytmgtraYakeiakllDPekk....lFgdrilsrdestsaktKsLkkllpadesavviiDdredvWkksk.nLikve 151
                k  LvlDlD+tl+h++  +    +           k++++ +f       ++v  RP+v+efl +++k ye+ +yt +  +Ya  +++llDP+k+    lF +  +  +    + +K L+ +l  d s  +iiD++ + +  ++ n i  +
  MMETSP1061-20121228|154_1 263 KKCLVLDLDETLVHSSFRAVEGADFV------IPVKIEEVVHF-------VYVMKRPGVDEFLVEMAKYYEIVIYTASLNKYADPLLDLLDPQKViryrLFRESCVFYE---GNYVKDLS-VLDRDLSKTIIIDNSPNSYLFHPaNAIDCS 396
                5689**********986654433322......22223334443.......56678*************************************98611113444444333...46788865.6667999********999988887877665 PP

>> TIGR02245  HAD_IIID1: HAD hydrolase, family IIID
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   4.1e-07   0.00042      14      81 ..     256     339 ..     246     351 .. 0.71
   2 ?    2.0   0.0     0.027        28     131     187 ..     374     426 ..     362     434 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.1e-07
  TIGR02245  14 lnppregkkllvldidytlld..hrsaa..........edvve....lmrpylhefltaayeeydiviwsatsmkwielklkel 81 
                + p   gkk lvld+d tl+   +r+++          e+vv+    ++rp ++efl++  + y+ivi++a+  k+ +  l+ l
  MMETSP1061-20121228|154_1 256 IHPDDTGKKCLVLDLDETLVHssFRAVEgadfvipvkiEEVVHfvyvMKRPGVDEFLVEMAKYYEIVIYTASLNKYADPLLDLL 339
                5677789************853356543212222222233332334489**********************9999887766665 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.027
  TIGR02245 131 ntimfddlrrnfvmnpknGlkikpfkkahanrdtdkellkltkylkkiaeledlssl 187
                 ti +d+    ++  p n +    f         d+el ++  +lk i    d+  l
  MMETSP1061-20121228|154_1 374 KTIIIDNSPNSYLFHPANAIDCSSFIDDP----RDRELDQIGSFLKGIRSARDVRGL 426
                69999999999*********999997654....566777788999999888888766 PP

>> TIGR02523  type_IV_pilV: type IV pilus modification protein PilV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.4   9.7e-05       0.1      35     102 ..     181     249 ..     178     257 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.7e-05
  TIGR02523  35 ksasertiasqlaynlldrmranpkalsdkkyktatalast.klsakasdcatsaateanaaaeadlke 102
                 ++s +t   ++ +  +++ r+    ls++++ ++t ++++ kl +k++++++++  + ++ +e+dl++
  MMETSP1061-20121228|154_1 181 SESSSDTSKDMIEESFMESFRMMCCCLSAHSDVVHTDTTTKkKLTSKDTQDSEDNVDNTKDVVEDDLER 249
                5788899999*************************9988777999**********99999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.27u 0.20s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1767.85
//
Query:       MMETSP1061-20121228|153_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.25s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1009.72
//
Query:       MMETSP1061-20121228|159_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 211.98
//
Query:       MMETSP1061-20121228|160_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1038.31
//
Query:       MMETSP1061-20121228|162_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1080.23
//
Query:       MMETSP1061-20121228|161_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.23s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 494.19
//
Query:       MMETSP1061-20121228|164_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 292.26
//
Query:       MMETSP1061-20121228|163_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   13.1   0.5     0.0072   12.4   0.3    1.3  1  TIGR01057 topA_arch: DNA topoisomerase I
  ------ inclusion threshold ------
       0.68    8.1  10.8       0.48    8.6   0.3    3.8  4  TIGR03798 ocin_TIGR03798: nif11-like leader peptide domain


Domain annotation for each model (and alignments):
>> TIGR01057  topA_arch: DNA topoisomerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.3   3.5e-06    0.0072     278     348 ..      81     155 ..      34     165 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.5e-06
  TIGR01057 278 GtlqreayrvfglsPkktqeiaqelyeealisy..Prtssq..klPksinyrkilknlakkPlyreaaellkekg 348
                 ++     ++++l   + ++ a ++ e+a+++   P   +q  k+ k+ n+++ l+++ak P+++++++ +k++ 
  MMETSP1061-20121228|163_1  81 AEMEAKMEHMLKLGNDQLKNNAGNMMEDAMAAMnnPEVMAQvaKMVKDPNFQQQLQQMAKDPQFKSYIDAMKDMA 155
                44555666788888888889999999998865422766666559**************************99653 PP

>> TIGR03798  ocin_TIGR03798: nif11-like leader peptide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.24     5e+02      12      29 ..      17      34 ..      15      45 .. 0.62
   2 ?    3.9   0.8     0.007        14      10      26 ..      54      70 ..      39     104 .. 0.83
   3 ?    8.6   0.3   0.00024      0.48      10      29 ..     122     141 ..     113     151 .. 0.78
   4 ?   -1.6   0.0      0.36   7.3e+02      11      24 ..     152     165 ..     142     171 .. 0.60

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.24
  TIGR03798 12 kvktDpdLreklkaaesp 29
               +  ++p++  +l+   ++
  MMETSP1061-20121228|163_1 17 EASQNPAMLAQLMRDLQD 34
               556788888888875333 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.007
  TIGR03798 10 lekvktDpdLreklkaa 26
               ++++++D++++e +k  
  MMETSP1061-20121228|163_1 54 MKEMAGDKAFQESIKKS 70
               57788888888888865 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00024
  TIGR03798  10 lekvktDpdLreklkaaesp 29 
                ++k+  Dp ++++l++++++
  MMETSP1061-20121228|163_1 122 VAKMVKDPNFQQQLQQMAKD 141
                78*************98554 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 0.36
  TIGR03798  11 ekvktDpdLreklk 24 
                + +++Dp+ +++++
  MMETSP1061-20121228|163_1 152 KDMANDPEKKKQME 165
                44567777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       401  (0.0977572); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.23s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 699.94
//
Query:       MMETSP1061-20121228|166_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.22s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 222.73
//
Query:       MMETSP1061-20121228|168_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 482.70
//
Query:       MMETSP1061-20121228|165_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 1909.44
//
Query:       MMETSP1061-20121228|170_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.27s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1411.03
//
Query:       MMETSP1061-20121228|172_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-29   99.8   0.1    5.6e-29   99.6   0.0    1.0  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
    3.7e-11   40.9   0.2    3.5e-10   37.7   0.2    1.9  1  TIGR00099 Cof-subfamily: Cof-like hydrolase
    9.4e-05   20.4   0.2       0.11   10.5   0.0    2.7  3  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    0.00021   18.8   0.0    0.00088   16.7   0.0    1.8  2  TIGR01485 SPP_plant-cyano: sucrose phosphatase
     0.0026   15.5   0.2     0.0053   14.5   0.0    1.6  2  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal


Domain annotation for each model (and alignments):
>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0   6.8e-32   5.6e-29       2     216 ..      36     252 ..      35     257 .. 0.83

  Alignments for each domain:
  == domain 1    score: 99.6 bits;  conditional E-value: 6.8e-32
  TIGR01484   2 lffDlDgTLldpklelseelieaLerlrealgvkvvivTGRslaeikellkqlnl.elpliaengalieaqgeklyaealpedvaevllseekelkeieailksls.eryv...gtfvedkalevaihysgqk.eleqeldskllerlekigirkdleleailsrsn.alqkegetllevlpagvdKgkalqalleelnlkkeeilafGD....sgNDeemlevag 216
                 +fD+DgTL+ p++e+ e +   L+ lr++  ++v+iv G++l +++e+l    + e+  + +  +l+ ++++ l+     + +    l+e + +++++ ++k+l+  +++   gtf+e+++ +++i++ g++  +e+++d+++++  ++ + ++++ ++ ++++++      g+  ++v+p+g+dK+++lq+l e  +   +ei++fGD    +gND e+++  +
  MMETSP1061-20121228|172_1  36 ALFDVDGTLTIPRGEVKEDMMDVLKALRKK--ITVGIVGGSDLPKQEEQLGDGIVnEVVWNFSQNGLVAYNNGNLLE----SNSISKHLGEDNIKRIVNWVMKYLAdVDLPvkrGTFIEFRSGMLNISPIGRNcSREERNDYEVFDLKNNVRKNMVEAMKKEFADLDmTYSIGGQISFDVFPTGWDKTYCLQYLKESDF---DEIHFFGDktfeGGNDFEIFSSDR 252
                68****************************..******************975553333333334444444444444....566667777888999**********94444599******************999***********999999995555555555555555556**************************...********************9755 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.2   4.3e-13   3.5e-10       3     220 ..      37     248 ..      35     253 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 4.3e-13
  TIGR00099   3 fiDlDGTLlskdkeispetkealaklrekGikvvlaTGRs.ykevkeilkelgld.plivanGaavvdengk...eilykkpldldlveeilnilkklgldvilysddsiyfsknkneifeiekkklaepkkevvknqlledddlkillllleaedldkleealkkeeleeelsvvsssedsieitakgvsKgsalqslaeklgislenviaiGD....seNDieMl 220
                 +D+DGTL  +  e+++  +++l++lr+k i v ++ G + +k+ +++ + + ++    + ++++v ++ng+   +    k l +d +++i+n++ k  +dv l  + + +++ +    +  + + +++++  ++ n    d +++ l+ +++++  + +++++     +  ++ ++ ++ s+++ + g +K + lq+l e    + +++  +GD    + ND e +
  MMETSP1061-20121228|172_1  37 LFDVDGTLTIPRGEVKEDMMDVLKALRKK-ITVGIVGGSDlPKQEEQLGDGIVNEvVWNFSQNGLVAYNNGNlleSNSISKHLGEDNIKRIVNWVMKYLADVDLPVKRGTFIEFRS-GML--NISPIGRNCSREERN----DYEVFDLKNNVRKNMVEAMKKEFA----DLDMTYSIGGQISFDVFPTGWDKTYCLQYLKE---SDFDEIHFFGDktfeGGNDFEIF 248
                69***************************.**********9555555555555555444556666666665333222445556679999999999999988888888888888885.333..333444444333333....667777777777776655555555....899999**************************...89*********333335777776 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00013      0.11       2      51 ..      35      75 ..      34      97 .. 0.81
   2 !    7.1   0.0    0.0015       1.2      54     119 ..     115     203 ..     108     212 .. 0.81
   3 ?   -2.8   0.0       1.6   1.3e+03     106     122 ..     223     239 ..     216     249 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00013
  TIGR01662  2 lvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqs 51
               ++++D+DgtL+       +  e +  ++++d l+ l+k+ ++v iv +++
  MMETSP1061-20121228|172_1 35 IALFDVDGTLT------IPRGEVK--EDMMDVLKALRKK-ITVGIVGGSD 75
               579********......3444555..8899999999999.9999998776 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0015
  TIGR01662  54 grgk..esveevsekveslleelgvpidvliacp.hs.........................kceyrKpktgmleealkrlneidakesvvvGD 119
                 + +  ++++++ ++v + l+++++p++   +++ +s                         k+++rK+   m+e ++k++  +d + +  +G 
  MMETSP1061-20121228|172_1 115 SKHLgeDNIKRIVNWVMKYLADVDLPVKRGTFIEfRSgmlnispigrncsreerndyevfdlKNNVRKN---MVEAMKKEF--ADLDMTYSIGG 203
                44445588999999999999999999999999998888999999999999999999999999999***9...999999999..56665666665 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.6
  TIGR01662 106 lneidakesvvvGDavl 122
                l e+d++e+ + GD+ +
  MMETSP1061-20121228|172_1 223 LKESDFDEIHFFGDKTF 239
                44678999999999776 PP

>> TIGR01485  SPP_plant-cyano: sucrose phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.2   1.6e+02     120     150 ..     112     142 ..      86     159 .. 0.86
   2 !   16.7   0.0   1.1e-06   0.00088     132     210 ..     178     259 ..     164     267 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.2
  TIGR01485 120 fkvsffldkeaaaevlkqleeeleksgldvk 150
                  +s +l++++ + +++ + + l + +l+vk
  MMETSP1061-20121228|172_1 112 NSISKHLGEDNIKRIVNWVMKYLADVDLPVK 142
                5689999999999999999999999999997 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 1.1e-06
  TIGR01485 132 aevlkqleeeleksgldvkliyssG..kdldilPqgadkgqalqyllek....lkiepsqtlvCGdsGndielfeisdvrGvivs 210
                ++v k++ e ++k   d  + ys G  + +d+ P g dk   lqyl+e     +++  ++t    + Gnd e+f+   + G  v+
  MMETSP1061-20121228|172_1 178 NNVRKNMVEAMKKEFADLDMTYSIGgqISFDVFPTGWDKTYCLQYLKESdfdeIHFFGDKTF---EGGNDFEIFSSDRTIGHTVT 259
                57889999999************8844579****************9742111444477776...6799***9998877776665 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   6.5e-06    0.0053       5      73 ..      37     105 ..      33     155 .. 0.71
   2 ?   -2.2   0.0      0.81   6.6e+02     123     123 ..     190     190 ..     164     248 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.5e-06
  TIGR01487   5 avDiDgTltdknrlislraieairklekkGikvvlvtGnevkfv.ealavligvsgavvaEnGgvvlykk 73 
                + D+DgTlt +   ++++ ++ ++ l+kk i v +v G   +   e+l  +i  + ++   + g+v y++
  MMETSP1061-20121228|172_1  37 LFDVDGTLTIPRGEVKEDMMDVLKALRKK-ITVGIVGGSDLPKQeEQLGDGIVNEVVWNFSQNGLVAYNN 105
                57*************************99.********98764314566666666566555555666664 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.81
  TIGR01487 123 k 123
                k
  MMETSP1061-20121228|172_1 190 K 190
                1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.21s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 956.03
//
Query:       MMETSP1061-20121228|175_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.2    2.1   9.3        8.1    1.7   6.5    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   6.5     0.002       8.1     807     909 ..     325     426 ..     288     458 .. 0.54

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.002
  TIGR00927 807 egegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieak....eevevegdedeteieaeeeaevkededeGeieaeedgevkGdeg 909
                 +e + ++k+++ k ee+  +++++++ ++eGde + +++    G++++d++++e   +    +  + + ++ +++ ++ ++a++   +d+G  +  ++g  + d++
  MMETSP1061-20121228|175_1 325 GDERKLDEKQGD-KVEEDGRNLDEKQGDKVEGDERKLDVKQ---GDKVGDKQDSETSDRklynNYYNNNNNNYNNNNNNYNNANGWYTDDDGGYDP-NNGYFRCDDD 426
                123333333322.2233444666667777777444444333...3333333333333221111222333333334444445556666666666655.4555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 2426.90
//
Query:       MMETSP1061-20121228|174_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 780.62
//
Query:       MMETSP1061-20121228|177_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-06   23.1   0.0    9.3e-06   22.9   0.0    1.1  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
     0.0021   15.2   0.0     0.0024   15.0   0.0    1.1  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
     0.0089   13.1   0.1      0.012   12.7   0.0    1.1  1  TIGR01546 GAPDH-II_archae: glyceraldehyde-3-phosphate dehydrogenase, type II


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   6.8e-09   9.3e-06       2      45 ..      44      86 ..      43      88 .] 0.79

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 6.8e-09
  TIGR01534  2 vginGfGRiGrlvlrallekkskdlevvaindl.tdleklayllk 45
               +g+nGfGRiGrlv r+++e++    ++ ain   ++ +++ay  k
  MMETSP1061-20121228|177_1 44 MGVNGFGRIGRLVTRIMMEDDA--CDLKAINAGsATPDYMAYQYK 86
               589****************966..666677766677777777666 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.8e-06    0.0024       3      47 ..      45      87 ..      43      88 .] 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.8e-06
  TIGR01532  3 aingfgrigrnvlralyesgkraeievvalne.ladaaavayllky 47
                +ngfgrigr v r + e       ++ a+n   a ++ +ay  ky
  MMETSP1061-20121228|177_1 45 GVNGFGRIGRLVTRIMMEDD---ACDLKAINAgSATPDYMAYQYKY 87
               68**************9975...45666777525778888887777 PP

>> TIGR01546  GAPDH-II_archae: glyceraldehyde-3-phosphate dehydrogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   8.5e-06     0.012       2      39 ..      45      84 ..      44      87 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.5e-06
  TIGR01546  2 ginGyGtiGkrvadavikqd..dmklvGvtktspdfeafi 39
               g+nG+G iG+ v+  +++ d  d+k +     +pd+ a+ 
  MMETSP1061-20121228|177_1 45 GVNGFGRIGRLVTRIMMEDDacDLKAINAGSATPDYMAYQ 84
               8*************99998866889999999******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 374.68
//
Query:       MMETSP1061-20121228|180_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   22.3   0.0    4.4e-05   21.3   0.0    1.5  1  TIGR02246 TIGR02246: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02246  TIGR02246: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.1e-08   4.4e-05      43     127 ..      25     102 ..      14     103 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.1e-08
  TIGR02246  43 lkGreaIaaaleaflekpvkgtkvevdvievrvlgpdlaivhaeatitatgkkraaaraavrltlvavkadgrWllaadqntpvr 127
                +   + I+a+++ f +k+++g ++  ++++   +g + a++  ++ +t+   + +  ++++r+++v+  +dg+W +a+++++ ++
  MMETSP1061-20121228|180_1  25 RTDYDSIKAYFVDFTKKQPQG-EILESYVT---VGHNWAMDDGIYEFTM---GATGDKVKARYSFVYTFEDGEWKIAHHHSSQMP 102
                455688999999999999995.44444444...4788888888888876...56778899*********************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 576.84
//
Query:       MMETSP1061-20121228|179_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-243  806.1   0.0     4e-243  805.8   0.0    1.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    9.8e-48  161.2   0.1      6e-24   82.7   0.0    4.1  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.2e-42  142.7   0.6    1.4e-14   51.9   0.0    5.1  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    4.8e-42  141.8   1.1    2.2e-12   44.6   0.1    4.1  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.8e-40  136.9   2.0      4e-23   79.6   0.3    3.9  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    6.3e-39  131.5   1.1    1.2e-17   62.0   0.0    3.6  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.9e-38  129.0   0.2    4.2e-11   39.6   0.0    4.7  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      4e-37  125.8   0.0    4.3e-16   57.1   0.0    4.3  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.3e-36  124.2   0.3    8.8e-18   62.5   0.1    3.7  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      3e-36  122.8   0.1    1.6e-08   32.1   0.0    4.2  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    6.4e-35  118.5   0.8    1.7e-17   61.5   0.0    3.9  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.1e-34  117.8   0.0    1.1e-09   36.0   0.0    4.3  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.3e-33  114.4   0.0    2.9e-14   51.2   0.0    4.1  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    3.5e-33  112.8   0.3    1.9e-08   31.1   0.0    4.5  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.3e-33  112.2   1.6      1e-12   45.7   0.1    4.2  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    9.5e-33  111.1   0.1    2.4e-16   56.9   0.0    3.8  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.6e-32  109.4   0.5      3e-21   73.5   0.0    3.4  3  TIGR01288 nodI: nodulation ABC transporter NodI
    5.5e-32  108.9   0.0    6.9e-17   59.5   0.0    4.6  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      6e-32  109.0   1.9    5.8e-16   56.5   0.1    4.4  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.2e-31  108.1   0.1    4.2e-16   56.9   0.0    3.5  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    9.1e-31  105.2   0.6    1.3e-13   48.9   0.0    4.1  4  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.1e-30  104.9   0.7    1.3e-16   58.8   0.1    3.7  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.4e-30  104.0   0.0    3.8e-10   36.5   0.0    4.1  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
      4e-30  102.8   0.9    1.9e-07   28.6   0.1    4.2  4  TIGR01978 sufC: FeS assembly ATPase SufC
    7.9e-30  101.8   0.1    7.3e-10   35.8   0.1    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    9.1e-29   98.6   0.7    2.4e-11   41.6   0.1    5.0  5  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.2e-28   98.2   0.1    6.5e-10   36.6   0.0    4.5  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.6e-28   97.6   0.0      5e-15   53.5   0.0    4.3  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.1e-27   95.0   0.3    6.2e-13   46.7   0.1    4.1  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      2e-26   90.5   0.3    4.1e-12   43.2   0.0    4.2  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.9e-26   89.8   0.1    1.1e-10   38.2   0.1    4.4  4  TIGR00958 3a01208: antigen peptide transporter 2
    3.1e-26   89.8   0.3    1.6e-07   28.0   0.0    4.1  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.8e-26   89.7   0.0    6.8e-08   30.0   0.0    4.4  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    4.1e-26   89.6   0.4    6.3e-09   32.8   0.3    4.1  3  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    9.3e-26   88.1   1.0    2.8e-06   23.9   0.0    4.1  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.4e-25   88.0   1.0    1.5e-09   35.6   0.2    4.2  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.5e-25   87.8   0.3    1.1e-10   38.9   0.1    3.9  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    4.3e-25   86.1   0.0    5.1e-12   42.9   0.0    4.4  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    5.7e-24   82.5   0.1    7.4e-07   26.4   0.0    4.1  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.4e-23   81.4   0.0    1.4e-06   25.8   0.0    4.2  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.5e-23   81.5   1.1    4.1e-10   37.5   0.1    3.7  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.2e-22   78.2   0.0    3.6e-11   40.5   0.0    3.8  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    3.9e-22   76.6   0.2    2.2e-10   38.0   0.1    3.5  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.3e-21   75.2   1.1    4.3e-05   21.2   0.1    4.2  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    3.3e-20   70.0   1.3    1.5e-07   28.2   0.0    4.1  4  TIGR00955 3a01204: pigment precursor permease
    8.5e-20   68.5   0.1    4.1e-10   36.5   0.0    3.2  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    9.6e-20   68.5   0.1      7e-09   32.6   0.1    3.7  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.9e-18   64.7   0.0    2.3e-07   28.4   0.0    4.1  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    5.8e-18   63.0   5.0    8.2e-07   26.3   0.3    4.3  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    6.2e-16   56.1   1.6    7.6e-05   19.6   0.2    4.3  3  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    8.9e-16   54.4   0.1    2.6e-07   26.3   0.0    3.1  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.2e-15   55.3   0.2     0.0003   18.1   0.0    4.2  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      2e-15   54.2   0.0    2.3e-06   24.3   0.0    3.1  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      5e-14   48.5   0.0    5.5e-07   25.2   0.0    3.1  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    6.1e-12   42.4   0.5      0.002   14.2   0.0    4.1  4  TIGR00630 uvra: excinuclease ABC subunit A
    1.2e-10   37.5   0.1      0.019   10.3   0.0    4.0  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
    4.7e-09   31.5   0.1    0.00085   14.0   0.0    3.6  3  TIGR01257 rim_protein: rim ABC transporter
    2.6e-07   28.4   1.3     0.0087   13.7   0.1    2.9  3  TIGR00231 small_GTP: small GTP-binding protein domain
    3.4e-06   24.2   0.3      0.012   12.6   0.0    2.4  2  TIGR00750 lao: LAO/AO transport system ATPase
    0.00024   16.8   0.1    0.00024   16.8   0.1    3.7  5  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00039   17.4   0.4      0.071    9.9   0.0    2.4  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    0.00044   17.5   2.1      0.071   10.3   0.1    2.3  2  TIGR00436 era: GTP-binding protein Era
    0.00071   16.2   0.1       0.44    7.0   0.0    2.2  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
     0.0025   13.9   0.8      0.085    8.8   0.0    2.3  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
     0.0042   13.6   0.4       0.74    6.2   0.0    2.2  2  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
     0.0059   12.1   1.3        1.3    4.3   0.0    3.3  3  TIGR00606 rad50: rad50
     0.0064   14.0   1.7       0.15    9.6   0.1    2.5  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
     0.0089   13.7   4.0       0.36    8.5   0.1    2.5  2  TIGR00152 TIGR00152: dephospho-CoA kinase
  ------ inclusion threshold ------
      0.012   12.3   1.1       0.46    7.0   0.0    2.2  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
      0.016   12.0   0.8       0.42    7.3   0.0    2.2  2  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
      0.016   12.0   2.3        3.1    4.4   0.0    3.1  3  TIGR03156 GTP_HflX: GTP-binding protein HflX
      0.026   12.0   0.3       0.15    9.5   0.0    2.3  2  TIGR03263 guanyl_kin: guanylate kinase
      0.028   11.2   0.2        2.4    4.9   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.066   11.1   1.8          2    6.3   0.1    2.5  2  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
        0.1    9.6   1.6       0.41    7.6   0.0    2.2  2  TIGR01420 pilT_fam: twitching motility protein
       0.89    4.9  14.3      0.042    9.3   0.0    3.7  4  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        3.7    4.7   8.8        2.5    5.2   0.1    3.3  3  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  805.8   0.0  7.4e-245    4e-243      16     550 ..       5     541 ..       2     543 .. 0.98

  Alignments for each domain:
  == domain 1    score: 805.8 bits;  conditional E-value: 7.4e-245
  TIGR03719  16 pkkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklaee...dadfdklleeqaklqekidaadawdldskleiamdalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarqakskarlaryeelasees.ekkeetaeivippgerlGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqsr.dalddnktvweeisdGldllklgkvevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeedkkkrlGedaaepkrikyk 550
                 +k+il++i+lsf+pgakiG++GlnG+Gkstllk+maGvd+e++G a++ +g+++Gyl+qeP l+   tv+en+ e+++  +++ld+++e s+kla++   d+++++++e+ +kl+++i+a d w+ld+ ++ amd+lr+p+ +a v++lsGGekrr alcrllle+ d+llldePtnhldaes+aWle +l +++Gtvv++thdryfl+n a+WileldrG+g+p++gny ++l+ k+krle+e+ke++a +ka+++eleW+r++pka+  kskarl+ry+el+++++ ++ ++  +i+ippg+rlG++v+ev+nl+k+fgd+lliddlsf+lp++givGv+GpnGaGkstl+k+++gke+pdsG++k+Getvk+  v q+r d+ld++ktv+eeis+Gld ++lg++++ sray+++f+fkG+ qq kvg+lsGGernr +lakllk ggn+++ldeP+ndldve lr+lee+ll+faGca+v+shdr++ldr++thila+egdsk++ff Gny+eye+++++rlGe++   kri+y 
  MMETSP1061-20121228|179_1   5 KSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLARPLPGASIGYLSQEPVLE-YPTVQENIDEAMKASQAVLDEYNEKSMKLADPditDEEMTQVMEDIEKLNDQIEAGDLWELDRVVSRAMDSLRVPDGNALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQGTVVCITHDRYFLNNCAGWILELDRGKGFPHEGNYETFLDMKNKRLEEEKKEQTAAAKAVANELEWIRTNPKAKGNKSKARLNRYDELLTAAApTELRNAGQIYIPPGPRLGNEVVEVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGETVKMVSVGQERmDELDSDKTVFEEISEGLDEIELGTQSIMSRAYLSWFGFKGQSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFAGCAFVVSHDRYMLDRLCTHILACEGDSKWHFFPGNYAEYEANRMERLGESS--IKRITYA 541
                579************************************************************97.579*****************************99999************************************************************************************************************************************************************************************97665516667788************************************************************************************98789***********************************************************************************************************************************************97..7789886 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   1.1e-25     6e-24     332     523 ..       3     215 ..       1     220 [. 0.81
   2 !   43.8   0.0   6.7e-14   3.6e-12     320     384 ..     283     376 ..     248     400 .. 0.74
   3 !   25.7   0.0     2e-08   1.1e-06     458     521 ..     436     497 ..     411     505 .. 0.88

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 1.1e-25
  TIGR02857 332 egrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenir..larkdaseae...........................vkealeragldelvkalpqglet...eiGer.gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaela 523
                ++++ ++l++++l++ pg ++++vG  G+GKstllk+++g+ + ++G  +    +l  ++       i++++Q+P+l + tv+eni   ++ ++a  +e                           +++ +e+ +l+el + + + +++   + G++  ++LSgG+++R aL r+ll+++++lllDEPt hLDae+ a ++  l+++  + tv+ ++H++  ++++
  MMETSP1061-20121228|179_1   3 PDKSkKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLAR----PLPGAS-------IGYLSQEPVLEYPTVQENIDeaMKASQAVLDEyneksmkladpditdeemtqvmediekLNDQIEAGDLWELDRVVSRAMDSlrvPDGNAlVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKF--QGTVVCITHDRYFLNNC 215
                5666689**********************************998888766....676666.......*******************8334444444444888999**************9999988666666666666666555555541004444323689********************************************6..45899*****9877765 PP

  == domain 2    score: 43.8 bits;  conditional E-value: 6.7e-14
  TIGR02857 320 s..............................slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga 384
                +                               +e++n++ ++ +r   ++++s++++p  +v++vG+ GaGKstl+k+l g  ep++G+i+v+++
  MMETSP1061-20121228|179_1 283 RydelltaaaptelrnagqiyippgprlgneVVEVTNLKKSFGDRL-LIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGET 376
                233445555555556666666666667777789************9.*********************************************775 PP

  == domain 3    score: 25.7 bits;  conditional E-value: 2e-08
  TIGR02857 458 gLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                +LSgG+r R  LA++l    ++++lDEP   LD e    ++e l ++a     ++v+H++ ++ 
  MMETSP1061-20121228|179_1 436 NLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFAGC--AFVVSHDRYMLD 497
                7*******************************************998764..577899987665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.4     6e-10   3.2e-08       9     104 ..       5      84 ..       3     115 .. 0.74
   2 !   45.4   0.0   2.5e-14   1.4e-12     130     201 ..     148     216 ..     131     221 .. 0.87
   3 !   51.9   0.0   2.6e-16   1.4e-14       1     198 [.     317     497 ..     317     504 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 6e-10
  TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklk 104
                k+k+il++++l++  G  + ivG  GsGKstlL +++ ++++ +g                 + l   ++gyl q+  +le  tv+en++ a+k +
  MMETSP1061-20121228|179_1   5 KSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLA---------------RPLPGASIGYLSQEP-VLEYPTVQENIDEAMKAS 84 
                689*************************************9886632...............233344455555553.345555555555555555 PP

  == domain 2    score: 45.4 bits;  conditional E-value: 2.5e-14
  TIGR03608 130 kkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekad 201
                  + +lsgGek R al r+ll + +++l DEPt  LD+++ + + ++l++ +    t++++tHd +  +++ 
  MMETSP1061-20121228|179_1 148 ALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ---GTVVCITHDRYFLNNCA 216
                56889*********************************99888877777664...699********999886 PP

  == domain 3    score: 51.9 bits;  conditional E-value: 2.6e-16
  TIGR03608   1 lkniskkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevae 198
                ++n++k+f+d+ ++++ls+++    +v +vG  G+GKstl+ +l   e++dsg++ + ++        k  ++ +e++        L  ++tv e ++ +l   ++ ++  + +   +l  +g+  ++++ k+ +lsgGe+ R  la++l    ++i+ DEP   LD +    + e l    +      +v Hd ++ +
  MMETSP1061-20121228|179_1 317 VTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGETV-------KMVSVGQERMD------ELDSDKTVFEEISEGLDEIELGTQ--SIMSRAYLSWFGFkGQSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGL---LNFAGCAFVVSHDRYMLD 497
                579****************************************************998877.......34445555554......355678888888888887776654..445567899****7788999************************************87444443333...334445566777777655 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   7.3e-09   3.9e-07      13      56 ..       6      49 ..       3      67 .. 0.89
   2 !   38.4   0.0   3.3e-12   1.7e-10     135     213 ..     150     225 ..     127     231 .. 0.83
   3 !   44.6   0.1   4.2e-14   2.2e-12       4      61 ..     317     374 ..     314     389 .. 0.89
   4 !   26.9   0.0   1.1e-08   5.6e-07     134     208 ..     433     504 ..     413     509 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 7.3e-09
  TIGR03873 13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaG 56
               ++ i+d++++++ +Ga  g++G nGsGkstll+++aG+ +  +G
  MMETSP1061-20121228|179_1  6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDG 49
               688**********************************9877666 PP

  == domain 2    score: 38.4 bits;  conditional E-value: 3.3e-12
  TIGR03873 135 lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgG 213
                ++ lsGGe++r+ l r l  +  +llldePtnhld ++   l + + +    + tvv   hd  +  + +  ++ ld G
  MMETSP1061-20121228|179_1 150 VKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKF---QGTVVCITHDRYFLNNCAGWILELDRG 225
                678********************************87654444455555...89999999*988888887777777777 PP

  == domain 3    score: 44.6 bits;  conditional E-value: 4.2e-14
  TIGR03873   4 lsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdla 61 
                ++++  + g rl++dd+  + P+  + g++GPnG+Gkstl+++l G ++pd G+++++
  MMETSP1061-20121228|179_1 317 VTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVG 374
                66778899**********************************************9875 PP

  == domain 4    score: 26.9 bits;  conditional E-value: 1.1e-08
  TIGR03873 134 dlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvv 208
                ++  lsGGer r +la+ l    ++++ldeP n ldv+   +l + +    +      v  hd  +  ++c h++
  MMETSP1061-20121228|179_1 433 KVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLL---NFAGCAFVVSHDRYMLDRLCTHIL 504
                5678********************************975333322222...333344445566666666666665 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.3   7.5e-25     4e-23     346     529 ..       5     208 ..       2     209 .. 0.73
   2 !   26.6   0.0   8.7e-09   4.7e-07     331     396 ..     311     375 ..     268     397 .. 0.71
   3 !   26.8   0.0   7.5e-09     4e-07     471     516 ..     436     481 ..     427     492 .. 0.88

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 7.5e-25
  TIGR02868 346 gaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGev.tldgvsvaslsesevrr......vv.svlaqdaHlFdttvreNlrlarpdatdeellaaLerv.gLadwlra.....L....pdGldtklgegg....arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                +++++l++++l   pG+++ +vG  G+GKstLl+++ag+    +G    l g+s+  ls++ v +       +   ++    + d    + ++la pd tdee+++++e + +L+d ++a     L       +d+    +g    + lSGGe++R al R Ll+++++llLDEPt hLDae  +  le+ l+  +g tvv +th+
  MMETSP1061-20121228|179_1   5 KSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLArPLPGASIGYLSQEPVLEyptvqeNIdEAMKASQAVLDEYNEKSMKLADPDITDEEMTQVMEDIeKLNDQIEAgdlweLdrvvSRAMDSLRVPDGnalvKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIA-WLETYLDKFQG-TVVCITHD 208
                3455*********************************987777775424777777777777665411000033123344445667777778******************9857999887644222311113455555566672222468********************************9876.56777777766.68999997 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 8.7e-09
  TIGR02868 331 ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldg 396
                ++  +e+ +l+ s+ +    ++++s+ l+p   v vvG+ GaGKstL+++l+g  +p++G++ + +
  MMETSP1061-20121228|179_1 311 GNEVVEVTNLKKSFGDR-LLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGE 375
                45556777777777665.5799****************************************9875 PP

  == domain 3    score: 26.8 bits;  conditional E-value: 7.5e-09
  TIGR02868 471 rlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLla 516
                 lSGGer R  lA+ L a  ++++LDEP+ +LD+e+ ++l e Ll+
  MMETSP1061-20121228|179_1 436 NLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLN 481
                69*********************************99999887774 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   3.8e-08     2e-06      13      55 ..       7      49 ..       3      57 .. 0.91
   2 !   40.5   0.0   9.5e-13     5e-11     122     187 ..     147     209 ..      70     217 .. 0.82
   3 !   62.0   0.0   2.3e-19   1.2e-17       2     170 ..     316     479 ..     315     498 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.8e-08
  TIGR01189 13 rvlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesG 55
               +++l ++++++ +G  + ++G nG+GK+tLL+++aG+ +  +G
  MMETSP1061-20121228|179_1  7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDG 49
               7899********************************9877666 PP

  == domain 2    score: 40.5 bits;  conditional E-value: 9.5e-13
  TIGR01189 122 dlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                +++v++Ls G krR al rLll++  + +LDEPt  lD+e+++ l++ l++    +G+v+  th  
  MMETSP1061-20121228|179_1 147 NALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKF---QGTVVCITHDR 209
                67899*******************************************9975...78899999875 PP

  == domain 3    score: 62.0 bits;  conditional E-value: 2.3e-19
  TIGR01189   2 eaeelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqk.tveealekvgLsgled.lpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaell 170
                e+++l  + g r l+ +lsf+l +  ++ v+GpnG+GK+tL+++l G  +p+sG++++ ++   ++ +  +e++  l   +++ +e+s  E L    ++   +q  +  + l   g +g ++   v +Ls G + R  la+Ll +   + iLDEP   lD+e  + l+e l
  MMETSP1061-20121228|179_1 316 EVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGETV--KMVSVGQERMDELDSDKTVFEEIS--EGL---DEIELGTQSiMSRAYLSWFGFKGQSQqSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGL 479
                5778999999************************************************9443..333344455555555555555544..444...4444444443778889******98651689************************************999998766 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1   9.6e-12   5.1e-10     476     564 ..       3      80 ..       1      91 [. 0.82
   2 !   39.6   0.0     8e-13   4.2e-11     602     668 ..     151     215 ..     122     241 .. 0.88
   3 !   27.4   0.0     4e-09   2.2e-07     480     528 ..     327     375 ..     272     389 .. 0.83
   4 !   19.4   0.0     1e-06   5.5e-05     602     671 ..     435     503 ..     425     509 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 9.6e-12
  TIGR03375 476 peeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialg 564
                p+++k+ L+n++l+  pG k++i+G +GsGKstllk+++g+ +  +G      +      +    ++igy++q+++L y t+++Ni  +
  MMETSP1061-20121228|179_1   3 PDKSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDG------L-----ARPLPGASIGYLSQEPVLEYPTVQENIDEA 80 
                78899***********************************9766554......3.....333334678999999999999999999654 PP

  == domain 2    score: 39.6 bits;  conditional E-value: 8e-13
  TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelv 668
                ++LSgG ++  al R+ll++ ++llLDEPt++lD++s + l + L ++  + T+v +tH   +L+ +
  MMETSP1061-20121228|179_1 151 KNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKF--QGTVVCITHDRYFLNNC 215
                68************************************9999999998..57*******99988754 PP

  == domain 3    score: 27.4 bits;  conditional E-value: 4e-09
  TIGR03375 480 kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldg 528
                +  ++++s+++ p   v+++G +G+GKstl k+l+g  ep++G++++ +
  MMETSP1061-20121228|179_1 327 RLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGE 375
                5568999**************************************9865 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 1e-06
  TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe.lvdri 671
                 +LSgG r    la++l    ++++LDEP++ lD +  ++l e L +++      +v+H   +L+ l+++i
  MMETSP1061-20121228|179_1 435 GNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFAG-CA-FVVSHDRYMLDrLCTHI 503
                48*********************************999999988887654.34.45566666664266666 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.3e-06   0.00012      14      59 ..       6      51 ..       3      95 .. 0.91
   2 !   40.6   0.0   8.5e-13   4.6e-11     116     214 .]     132     226 ..     109     226 .. 0.83
   3 !   57.1   0.0   8.1e-18   4.3e-16       1     208 [.     314     504 ..     314     509 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.3e-06
  TIGR02673 14 gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGev 59
               + ++L++++l++ +g  + ++G  G+Gk+tllk++ g+++ + G  
  MMETSP1061-20121228|179_1  6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLA 51
               5689**********************************99999976 PP

  == domain 2    score: 40.6 bits;  conditional E-value: 8.5e-13
  TIGR02673 116 krveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelekgk 214
                + v+++++ + + d  +al ++lsgGe+ R+a+ R ++++ ++ll DePt  lD+e  + + + l ++     tv+  thd+ ++++ +  +lel++gk
  MMETSP1061-20121228|179_1 132 RVVSRAMDSLRVPDG-NALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKF---QGTVVCITHDRYFLNNCAGWILELDRGK 226
                566666666666664.677899********************************98766666666555...4589999*****************9985 PP

  == domain 3    score: 57.1 bits;  conditional E-value: 8.1e-18
  TIGR02673   1 iielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkaka.lpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvl 208
                ++e+++++k++ ++   ++d+s+++ ++ ++ ++G+ GaGk+tl+k+l+g+e+p++G+++v  e v+ ++   + +   ++       +l +d+tv+e +   l      +++i +r  + l++ g++ + ++ +  +lsgGe+ R  +a+ +    ++++ DeP  +lD e+ +++ + l  ln +G + +v++hd+ +++r  +++l
  MMETSP1061-20121228|179_1 314 VVEVTNLKKSF-GDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVG-ETVKMVS---VGQE--RM------DELDSDKTVFEEISEGLDEIELGTQSIMSR--AYLSWFGFKGQSQQsKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGL--LNFAGCA-FVVSHDRYMLDRLCTHIL 504
                57889999999.677889******************************************95.4443332...2222..22......257799************999999999987..679*****98876516789********************************87666655544..4556766.56689*999999866655 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0     2e-07     1e-05      14      55 ..       8      49 ..       5      60 .. 0.92
   2 !   33.9   0.0   9.1e-11   4.9e-09     128     208 ..     150     226 ..     138     237 .. 0.91
   3 !   62.5   0.1   1.7e-19   8.8e-18       2     171 ..     316     477 ..     315     493 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2e-07
  TIGR00968 14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsG 55
               ++ld+++l+   G  ++++G  GsGkstll+v+aG++ +  G
  MMETSP1061-20121228|179_1  8 KILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDG 49
               689*********************************988766 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 9.1e-11
  TIGR00968 128 psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGk 208
                 ++lsGG+++r al r l  + ++llldep   lda+      awl    d+ + t v +thd+    + a  i  l++Gk
  MMETSP1061-20121228|179_1 150 VKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAE----SIAWLETYLDKFQGTVVCITHDRYFLNNCAGWILELDRGK 226
                578********************************95....579*******************999988888888888886 PP

  == domain 3    score: 62.5 bits;  conditional E-value: 1.7e-19
  TIGR00968   2 lianvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqlekl.gdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelra 171
                +++n++k+fGd   +dd++++++   +v+++Gp G+Gkstl++++ G e+pdsG+i + G+ v  v+v + ++        l    tv+++i+ Gl+     ++ i  +    l+  ++++  +++   +lsGG+r+r  la+ l    ++++ldep   ld +v + l +
  MMETSP1061-20121228|179_1 316 EVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKV-GETVKMVSVGQERMD------ELDSDKTVFEEISEGLDEIELGTQSIMSR--AYLSWFGFKGQsQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEE 477
                799*****************************************************97.778888887766654......466778999*******9888888888776..4789999887615567789**********************************9988876 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   5.4e-10   2.9e-08      16      61 ..       5      50 ..       3      68 .. 0.85
   2 !   32.1   0.0   3.1e-10   1.6e-08     140     207 ..     151     214 ..     145     227 .. 0.78
   3 !   28.0   0.0   5.5e-09   2.9e-07       7      78 ..     320     388 ..     314     398 .. 0.76
   4 !   25.8   0.0   2.6e-08   1.4e-06     127     208 ..     421     499 ..     404     509 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 5.4e-10
  TIGR02211 16 leievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGe 61
               ++ ++l++++l+ + g  ++ivG  GsGkstll +++g+d+  +G 
  MMETSP1061-20121228|179_1  5 KSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGL 50
               5678************************************998885 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 3.1e-10
  TIGR02211 140 selsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakk 207
                 +lsGGe++r a+ r l+++ +++l dePt +ld+++   i  l + l+k ++t ++ +thd+ + ++
  MMETSP1061-20121228|179_1 151 KNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAES---IAWLETYLDKFQGT-VVCITHDRYFLNN 214
                589*******************************765...55666677776665.6788999987654 PP

  == domain 3    score: 28.0 bits;  conditional E-value: 5.5e-09
  TIGR02211   7 ltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevll.kGkelsklssnera 78 
                l+ks+ +      +++++s+++  + +v++vG  G+Gkstl+ +l g ++p sG++++ +  ++ ++ ++++ 
  MMETSP1061-20121228|179_1 320 LKKSFGD----RLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVgETVKMVSVGQERMD 388
                5555543....346899***************************************98223445555555555 PP

  == domain 4    score: 25.8 bits;  conditional E-value: 2.6e-08
  TIGR02211 127 ekvglekri.nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl 208
                + +g++ +  + k ++lsGGer r+ +a+ l    ++++ deP  +ld +  +++ e l    +  + a+ vv+hd+ + ++l
  MMETSP1061-20121228|179_1 421 SWFGFKGQSqQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGL---LNFAGCAF-VVSHDRYMLDRL 499
                555555444156899*********************************98766655444...34455666.578998887776 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     3e-06   0.00016      14      52 ..       7      45 ..       5      58 .. 0.90
   2 !   32.5   0.0   2.3e-10   1.2e-08     128     178 ..     148     198 ..     132     218 .. 0.86
   3 !   61.5   0.0   3.2e-19   1.7e-17       2     171 ..     315     475 ..     314     484 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 3e-06
  TIGR03864 14 rralddvsltvakgefvaLLGpnGaGkstLfslltrLye 52
               +++ld+++l+  +g+ + ++G+nG+GkstL+++++++ +
  MMETSP1061-20121228|179_1  7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDT 45
               789*******************************99765 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 2.3e-10
  TIGR03864 128 ekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrel 178
                + v++L+GG++rr  + r ll + ++LLlDe+t  LD+es a l +++ + 
  MMETSP1061-20121228|179_1 148 ALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKF 198
                5699************************************99888877654 PP

  == domain 3    score: 61.5 bits;  conditional E-value: 3.2e-19
  TIGR03864   2 leveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaer.aeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraal 171
                +ev++l++++g+r  +dd+s++++++ +v ++GpnGaGkstL+++l +  e ++g+ikv G  ++      + ++G   +   lD d +v + ++    L  +   + +   ++ l+ +g++ + +++kv +L+GG+r r  +a+ l    ++++lDe++  LD+e  ++l
  MMETSP1061-20121228|179_1 315 VEVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKV-GETVK------MVSVGQE-RMDELDSDKTVFEEISE--GLDEIELGTQSIMSRAYLSWFGFKGQsQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSL 475
                689*******************************************************9.44433......3344422.34579********9975..5666655555555667899999987615679***********************************9976666 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   8.7e-09   4.6e-07      14      57 ..       6      49 ..       3      77 .. 0.90
   2 !   28.8   0.0   3.2e-09   1.7e-07     143     187 ..     150     194 ..     132     228 .. 0.81
   3 !   36.0   0.0     2e-11   1.1e-09       2      64 ..     315     376 ..     314     409 .. 0.83
   4 !   20.2   0.0   1.3e-06   6.8e-05     138     184 ..     429     475 ..     410     530 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 8.7e-09
  TIGR02315 14 gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissg 57
                k++l+n+nl++ +G  ++++Gl G+Gkstll+ + ++ ++ +g
  MMETSP1061-20121228|179_1  6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDG 49
               6899******************************9999887666 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 3.2e-09
  TIGR02315 143 adqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdl 187
                +++LsGG++ R a++R l+++ +++l DEP+  LD +s   +  +
  MMETSP1061-20121228|179_1 150 VKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETY 194
                789********************************9986554444 PP

  == domain 3    score: 36.0 bits;  conditional E-value: 2e-11
  TIGR02315   2 levenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegk 64 
                +ev+nl+k+++ ++  ++++++++ +  +v+v+G+ GaGkstl++++ + +e++sg+i++ ++
  MMETSP1061-20121228|179_1 315 VEVTNLKKSFG-DRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGET 376
                79*********.999*****************************************9987543 PP

  == domain 4    score: 20.2 bits;  conditional E-value: 1.3e-06
  TIGR02315 138 laakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqv 184
                 +++++ +LsGG++ R  +a+ l    ++i+ DEP   LD +  + +
  MMETSP1061-20121228|179_1 429 SQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSL 475
                456799**********************************8765544 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   2.2e-06   0.00012      16      58 ..       7      49 ..       3      73 .. 0.86
   2 !   36.1   0.0   2.2e-11   1.2e-09     116     215 ..     131     226 ..     121     227 .. 0.83
   3 !   51.2   0.0   5.5e-16   2.9e-14      14     209 ..     325     504 ..     314     509 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 2.2e-06
  TIGR00960 16 elaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaG 58
               +  ldn++++   G  + +vG  G+Gkstllk++ g+++   G
  MMETSP1061-20121228|179_1  7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDG 49
               4589*******************************99987766 PP

  == domain 2    score: 36.1 bits;  conditional E-value: 2.2e-11
  TIGR00960 116 eervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGk 215
                +++vs a++ + + d  +al ++lsgGe++r a+ r ++++  +ll dePt  ld e    +      +++   tv+  thd+ ++++    +l+l++Gk
  MMETSP1061-20121228|179_1 131 DRVVSRAMDSLRVPD-GNALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLE---TYLDKFQGTVVCITHDRYFLNNCAGWILELDRGK 226
                566777777766655.4678899********************************87644444...4455666799999******************997 PP

  == domain 3    score: 51.2 bits;  conditional E-value: 5.5e-16
  TIGR00960  14 aaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalPv.qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvl 209
                + +l +d+++++++   +v +vG+ GaGkstl+k+++g e+p +G i+v +     ++   v+  r          +l sd+tv++++   l  i   ++ i  r+   l   G+k++ ++  v +lsgGe+ r ++a+ +    ++++ deP+ +ld e+ r + e l  +n aG + +  +hd+ ++++   ++l
  MMETSP1061-20121228|179_1 325 GDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGE-T---VKMVSVGQERM--------DELDSDKTVFEEISEGLDEIELGTQSIMSRA--YLSWFGFKGQSQQSKVgNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGL--LNFAGCAFV-VSHDRYMLDRLCTHIL 504
                556789******************************************964.3...33444444442........36899*********************99886..58899***9987765439********************************88766655544..556676655.5799999998887777 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   5.3e-10   2.8e-08     327     412 ..       3      77 ..       1      89 [. 0.82
   2 !   27.4   0.0   4.8e-09   2.5e-07     453     530 ..     151     226 ..     110     235 .. 0.84
   3 !   31.1   0.0   3.6e-10   1.9e-08     319     377 ..     315     373 ..     273     388 .. 0.78
   4 !   18.0   0.0   3.3e-06   0.00018     453     499 ..     435     481 ..     427     512 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 5.3e-10
  TIGR01842 327 peekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeni 412
                p++ kk+l +i+++  +G+ ++i+G  gsGks+L +++ Gv ++  G  r              G siGYl q+  L   tv+eni
  MMETSP1061-20121228|179_1   3 PDKSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLAR-----------PLPGASIGYLSQEPVLEYPTVQENI 77 
                78889************************************999888655...........4456667777777666666676666 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 4.8e-09
  TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvith.rpsllelvdkilvlkdGa 530
                ++LsgG + R aL R l  +  +++LDeP   LD+e  + l + l    + + tvv ith r  l +++  il l+ G+
  MMETSP1061-20121228|179_1 151 KNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLD---KFQGTVVCITHdRYFLNNCAGWILELDRGK 226
                589********************************98777776655...556899999983555667888888888775 PP

  == domain 3    score: 31.1 bits;  conditional E-value: 3.6e-10
  TIGR01842 319 venvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrl 377
                ve  +l ++ + +  + ++sf+l +  +++++Gp g+Gks+L ++l+G  +p sG++++
  MMETSP1061-20121228|179_1 315 VEVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKV 373
                4444556677888999****************************************997 PP

  == domain 4    score: 18.0 bits;  conditional E-value: 3.3e-06
  TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalke 499
                 +LsgG r R  La+ l     +++LDeP  +LD e    l + l +
  MMETSP1061-20121228|179_1 435 GNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLN 481
                48********************************9988777777754 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0     3e-08   1.6e-06       4      41 ..       6      43 ..       3      70 .. 0.88
   2 !   34.3   0.0   6.4e-11   3.4e-09     103     186 ..     129     208 ..      72     211 .. 0.86
   3 !   45.7   0.1     2e-14     1e-12       7     182 ..     329     489 ..     324     495 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 3e-08
  TIGR01166  4 eaevlkglnlavergevlallGanGaGkstlllhlnGl 41
                 ++l+++nl++  g +++++G nG+Gkstll+ ++G+
  MMETSP1061-20121228|179_1  6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGV 43
               5689********************************97 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 6.4e-11
  TIGR01166 103 everrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                e++r+v+ a++ + + +  + +++ lsgGek+r+a+   +  + d+llldePt  ld++    l + l+k++  G tvv  thd
  MMETSP1061-20121228|179_1 129 ELDRVVSRAMDSLRVPDG-NALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ--G-TVVCITHD 208
                778889999999999885.56899*********************************************986..4.67778898 PP

  == domain 3    score: 45.7 bits;  conditional E-value: 2e-14
  TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfa.advdedvafgplnlGlseaeverrvrealaavdisgleer.pthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvi 182
                 +++l++++  +  ++++G+nGaGkstl+++l G   P sG++ + Ge ++               v q+  d l +  +v+e+++ g+  + l  + + +r    l+  + +g  ++  +  lsgGe+ r  +a  +    ++++ldeP+ +ld +  + l e l   + +G   v+
  MMETSP1061-20121228|179_1 329 LIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKV-GETVKM------------VSVGQERMDELDSdKTVFEEISEGLDEIELGTQSIMSRA--YLSWFGFKGQSQQsKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLL--NFAGCAFVV 489
                5789999***********************************987.565543............3345555555544168999***********999999885..688999988776625789*********************************99998887663..445555555 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   4.5e-18   2.4e-16     492     689 ..       7     227 ..       3     244 .. 0.76
   2 !   27.8   0.0   2.9e-09   1.6e-07     440     539 ..     278     374 ..     269     387 .. 0.80
   3 !   21.0   0.0   3.3e-07   1.8e-05     614     682 ..     435     504 ..     422     509 .. 0.83

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 4.5e-18
  TIGR03796 492 apliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeil.fDgkpreeiprevlanslalvdqdi...vlfegtvrd.....nltlwdetipeedlvrAakDA.aihdvila.........rpggyea.elaegg...anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRdcde.iivlerGkv 689
                ++++++++ls  pG+++ +vG  GsGkst+ k++aG+ ++++G  + + g +   +++e + +   +v+ +i   +  + +v d      + l d+ i++e++++ ++D   ++d+i a          + ++++ ++ +g    +nlsGG++ R  + R L +n  +L+lDE t  LDae    ++  l +   t++ ++H    + +c   i+ l+rGk 
  MMETSP1061-20121228|179_1   7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLARpLPGASIGYLSQEPVLEY-PTVQENIdeaMKASQAVLDeynekSMKLADPDITDEEMTQVMEDIeKLNDQIEAgdlweldrvVSRAMDSlRVPDGNalvKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQGTVVCITHDRYFLNNCAGwILELDRGKG 227
                7899***************************************886588999999998877654.445554422133334454423222589*****************7358999976222211111122222213444433447********************************************************99999999752777999984 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 2.9e-09
  TIGR03796 440 eadlerldDvlenpvdeeleeeeekaaeseekekLsG.kvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfD 539
                +a l+r d++l++++ +el+++ +      +  +L    ve++n++ ++   ++ li+d+s+sl p   v +vG+ G+Gkst+ k++ G  ep sG+i + 
  MMETSP1061-20121228|179_1 278 KARLNRYDELLTAAAPTELRNAGQ--IYIPPGPRLGNeVVEVTNLKKSFG--DRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVG 374
                677888888888887777777333..333344577541579999988775..679******************************************9875 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 3.3e-07
  TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr.RgctciivaHRLstiRdcdeii 682
                 nlsGG+r R ++A+ L +   ++ilDE    LD e+ ++++e l +  gc+ ++   R    R c +i+
  MMETSP1061-20121228|179_1 435 GNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNfAGCAFVVSHDRYMLDRLCTHIL 504
                6*****************************************9876527888776655766666666665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0015      0.08      17      55 ..       7      45 ..       4      56 .. 0.88
   2 !   22.5   0.0   1.9e-07     1e-05     112     170 ..     130     187 ..     111     208 .. 0.84
   3 !   73.5   0.0   5.7e-23     3e-21       4     206 ..     314     504 ..     311     513 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0015
  TIGR01288 17 kvvvndlsftiaagecfgllgpngagkstiarlvlglis 55
               k +++++ ++   g  +g++g ng+gkst+ +++ g+ +
  MMETSP1061-20121228|179_1  7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDT 45
               67899999999*********************9999865 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.9e-07
  TIGR01288 112 ieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpha 170
                ++ v+   ++  r+    ++ v +lsgg krr +l+r l+++ ++l+ldept  ld  +
  MMETSP1061-20121228|179_1 130 LDRVVSRAMDSLRVP-DGNALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAES 187
                555666666666654.4678899********************************9754 PP

  == domain 3    score: 73.5 bits;  conditional E-value: 5.7e-23
  TIGR01288   4 aidlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlc 206
                 +++++++ks+gd+++++dlsf++      g++gpngagkst+ ++++g   pd g+i v +  v        + +g   ++d+ld + tv e++      ++l t+ i +    l  f       + +v +lsgg + r  la+ l    +++ildep+  ld      + e    ll      ++ +h     +rlc  + 
  MMETSP1061-20121228|179_1 314 VVEVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGET-V------KMVSVGQ-ERMDELDSDKTVFEEISEGLDEIELGTQSIMSRA-YLSWFGFKGQSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEG---LLNFAGCAFVVSHDRYMLDRLCTHIL 504
                6899******************************************************98543.3......2345563.679************9988889999999986532.233344444556789***********************************8876655554...44444445555565555667776655 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   2.5e-06   0.00013      13      56 ..       7      50 ..       4      99 .. 0.91
   2 !   22.4   0.0   2.8e-07   1.5e-05     131     209 ..     152     226 ..     142     246 .. 0.85
   3 !   59.5   0.0   1.3e-18   6.9e-17       2     174 ..     316     479 ..     315     491 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.5e-06
  TIGR03410 13 sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGe 56
                ++l +++l+   g  + ++G ng Gk+tllk + g+ ++ +G 
  MMETSP1061-20121228|179_1  7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGL 50
               579*********************************99888775 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 2.8e-07
  TIGR03410 131 dLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGe 209
                +LsGG +   a+ R L+ +  +llLDePt+ +    i+ +e+ +++ +     +++ + +   f  ++a  +l l+rG+
  MMETSP1061-20121228|179_1 152 NLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQG----TVVCITHDRYFLNNCAGWILELDRGK 226
                8********************************9999999988887765....67777777888888888888888887 PP

  == domain 3    score: 59.5 bits;  conditional E-value: 1.3e-18
  TIGR03410   2 evenlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklk.peervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiy.elFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvi 174
                ev+nl+ ++g+  ++ d+s++++   +v v+G ng+Gk+tl+k l+g  +  sG+i++ + +++ ++  +er+           e+ ++ tv e +  gl++ +  +++i+ ++y + F    + ++ + G+LsGG +    +a+ L +  ++++LDeP++ +   +++ +e+ +
  MMETSP1061-20121228|179_1 316 EVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGE-TVKMVSvGQERM----------DELDSDKTVFEEISEGLDEIELGTQSIMSRAYlSWFGFKGQSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGL 479
                799*****************************************************9854.444333033333..........25667889*************9999999887747899999*************************************999999988888765 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.4e-05    0.0024       7      47 ..       8      48 ..       5      54 .. 0.87
   2 !   31.6   0.0   4.2e-10   2.2e-08     118     208 ..     146     233 ..      99     303 .. 0.75
   3 !   56.5   0.1   1.1e-17   5.8e-16       1     194 [.     322     503 ..     322     507 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.4e-05
  TIGR01188  7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPds 47
               k +d++nl+ + g  +g++G nG GK+t++k+++++ +  +
  MMETSP1061-20121228|179_1  8 KILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYD 48
               5689*****************************99866555 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 4.2e-10
  TIGR01188 118 adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtp 208
                 +  vk++sgG +rr  l + l+++ ++l LDEPt  LD+++ + +  ++++++    t++  th+ +  ++ a  +  +d+Gk   +++ 
  MMETSP1061-20121228|179_1 146 GNALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ---GTVVCITHDRYFLNNCAGWILELDRGKGFPHEGN 233
                5789******************************************99999886...4888889999999999999988888886554433 PP

  == domain 3    score: 56.5 bits;  conditional E-value: 1.1e-17
  TIGR01188   1 KkygefkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvv.pqkasvdedLtarenlellgelyglpkkeaeeraeellelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrv 194
                K +g+   +d+++++++   ++g++GPnGAGK+t+ikmL +  +PdsGt +v         ++v+  ++v   ++  +d+d t  e++    +  +l  + + +ra   l  + +k + ++ kv+++sgG r r +la  l a  +++ LDEP   LD++  r++ + + ++       ++ +h+ +  d+l+ ++
  MMETSP1061-20121228|179_1 322 KSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVG--------ETVK-MVSVGqERMDELDSDKTVFEEISEGLDEIELGTQSIMSRA--YLSWFGFKgQSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNF---AGCAFVVSHDRYMLDRLCTHI 503
                789999*******************************************8884........3333.2333202345678888888877655555556666666665..699999982456789************************************9887777655433...334567777777777777766 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.2e-06   0.00017      17      59 ..       7      49 ..       4      63 .. 0.92
   2 !   27.9   0.0   5.2e-09   2.8e-07     133     194 ..     151     208 ..     129     220 .. 0.88
   3 !   56.9   0.0   7.8e-18   4.2e-16       3     175 ..     313     477 ..     311     484 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.2e-06
  TIGR03265 17 ftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaG 59
                ++l++i+ls   g  + ++G  G Gk+tLL+++aG++++  G
  MMETSP1061-20121228|179_1  7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDG 49
               5789**********************************98776 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 5.2e-09
  TIGR03265 133 gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd 194
                  lsGG ++r aL r l    ++LLLDeP   LDa   + L + l k+q     t + +thd
  MMETSP1061-20121228|179_1 151 KNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQG----TVVCITHD 208
                579**********************************9999999999886....55667776 PP

  == domain 3    score: 56.9 bits;  conditional E-value: 7.8e-18
  TIGR03265   3 eylsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgsee.kyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLre 175
                e +++++++k+f++   ++d+s+s+    +v ++GP G Gk+tL++++ G e++d+G+i +g+        q+r          L  + tv e i+ GL + +l+++ + +r    L+  g++g+++    g lsGG + r  La+ l    ++++LDeP   LD  v  +L e
  MMETSP1061-20121228|179_1 313 EVVEVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGETVKMVSVGQER-M------DELDSDKTVFEEISEGLDEIELGTQSIMSRA--YLSWFGFKGQSQqSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEE 477
                6789*******************************************************998764444444444.2......3678899********************9985..79999999765515579**********************************99888876 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   5.4e-06   0.00029      15      50 ..       7      42 ..       5      51 .. 0.92
   2 !   15.9   0.0   2.7e-05    0.0014     131     172 ..     150     191 ..     102     283 .. 0.85
   3 !   48.9   0.0   2.4e-15   1.3e-13       3      64 ..     315     376 ..     313     390 .. 0.93
   4 !   17.4   0.0   9.9e-06   0.00053     125     169 ..     428     472 ..     406     504 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.4e-06
  TIGR03522 15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltg 50
               +k+ld++ ++  +G  +G +G nG+Gkstl+k+++g
  MMETSP1061-20121228|179_1  7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAG 42
               789******************************987 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 2.7e-05
  TIGR03522 131 igalskGyrqrvGlakallhdPkvlildePttGldPnqlvei 172
                + +ls G ++r  l + ll + ++l+ldePt  ld + +  +
  MMETSP1061-20121228|179_1 150 VKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWL 191
                789********************************9988655 PP

  == domain 3    score: 48.9 bits;  conditional E-value: 2.4e-15
  TIGR03522   3 vevsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavage 64 
                vev++l k++g +  +d++sf+  +  ivG +GPnGaGkstl+k+l g  ++dsG+++v ++
  MMETSP1061-20121228|179_1 315 VEVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGET 376
                799*******************************************************9765 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 9.9e-06
  TIGR03522 125 aeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnql 169
                + q  k+g+ls G r+r+ lak l    +++ildeP+  ld + l
  MMETSP1061-20121228|179_1 428 QSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVL 472
                45788***********************************98765 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   4.1e-07   2.2e-05      11      52 ..       5      46 ..       4      52 .. 0.90
   2 !   19.6   0.0   2.4e-06   0.00013     121     177 ..     149     205 ..     132     217 .. 0.87
   3 !   58.8   0.1   2.5e-18   1.3e-16       2     170 ..     316     482 ..     315     503 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.1e-07
  TIGR03740 11 kkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrk 52
               k +++++n++l+    +  g++G nG+Gkstllk+++G+ ++
  MMETSP1061-20121228|179_1  5 KSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTE 46
               5689**********************************8655 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 2.4e-06
  TIGR03740 121 kakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitv 177
                 +k++s G k+r  +   ll++ ++l+ldePtn ld   i  l   +  f+   + +
  MMETSP1061-20121228|179_1 149 LVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQGTVVCI 205
                5789999**********************************9999999997554444 PP

  == domain 3    score: 58.8 bits;  conditional E-value: 2.5e-18
  TIGR03740   2 etknlskkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeill.dgrewtrkdlkkiGsliesPalyenlta.renlkvrtlllglpesrieevlkivdle.ntekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksf 170
                e+ nl+k+f+++ +++++s++++   + g++GpnGaGkstl+k+l G  +++sG i++ +  ++     + +  l  + +++e+++   +++++       ++      l+  +++ + ++ k++++s G ++r  +a  l    +++ildeP+n ld   ++ l e +  f
  MMETSP1061-20121228|179_1 316 EVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVgETVKMVSVGQERMDELDSDKTVFEEISEgLDEIELG-----TQSIMSRAYLSWFGFKgQSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNF 482
                789*****************************************************993455777777788888888888888887413444433.....33333456788888872556789****************9999***************87777776655555 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.2e-08   6.6e-07     468     506 ..       5      43 ..       2      50 .. 0.88
   2 !   36.5   0.0   7.1e-12   3.8e-10     593     682 ..     152     241 ..     146     251 .. 0.90
   3 !   22.3   0.0   1.4e-07   7.3e-06     464     518 ..     321     375 ..     277     382 .. 0.77
   4 !   13.9   0.0   4.8e-05    0.0026     588     639 ..     431     482 ..     422     509 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.2e-08
  TIGR01846 468 dspevlsnlsldikaGeviGivGpsGsGkstltkllqrl 506
                 s ++l+n++l+  +G  iGivG  GsGkstl k++  +
  MMETSP1061-20121228|179_1   5 KSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGV 43 
                4679******************************99755 PP

  == domain 2    score: 36.5 bits;  conditional E-value: 7.1e-12
  TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraad.rilvlekGk.ivesGkheellake 682
                +lsGG ++r al r l+ n  +l+lde t  ld+es a +   l++     tv++i+h    + ++   il l++Gk    +G++e +l  +
  MMETSP1061-20121228|179_1 152 NLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ--GTVVCITHDRYFLNNCAgWILELDRGKgFPHEGNYETFLDMK 241
                8********************************************974..69******99999999736999****9445789999988765 PP

  == domain 3    score: 22.3 bits;  conditional E-value: 1.4e-07
  TIGR01846 464 rykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdg 518
                + +     ++++ls+++++  ++G+vGp G+Gkstl k+l     P+ G + v +
  MMETSP1061-20121228|179_1 321 KKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGE 375
                4444556789***************************************998865 PP

  == domain 4    score: 13.9 bits;  conditional E-value: 4.8e-05
  TIGR01846 588 gekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei 639
                + k ++lsGG r r  la+ l a   ++ilde    ld e  +++ + l + 
  MMETSP1061-20121228|179_1 431 QSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNF 482
                45789**********************************9888877776655 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.7e-08   1.9e-06      12      50 ..       6      44 ..       3      48 .. 0.93
   2 !   22.3   0.0     3e-07   1.6e-05     141     209 ..     149     214 ..     101     241 .. 0.85
   3 !   28.6   0.1   3.6e-09   1.9e-07       2      62 ..     316     374 ..     315     390 .. 0.86
   4 !   22.1   0.0   3.4e-07   1.8e-05     145     210 ..     437     499 ..     417     506 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 3.7e-08
  TIGR01978 12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghe 50
                k+iL+++nl+  +G+   i+G nGsGkstL kv+ag +
  MMETSP1061-20121228|179_1  6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVD 44
               699*********************************965 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 3e-07
  TIGR01978 141 lneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllel 209
                l +  sGGek+r+ +++l+l + ++ +LDe    lD +++  + + ++k++    +++ ith + +l++
  MMETSP1061-20121228|179_1 149 LVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ---GTVVCITHDRYFLNN 214
                55678***********************************99999888886...568899999888775 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 3.6e-09
  TIGR01978   2 kikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklk 62 
                ++++l+ s  d+ ++++l+ ++ +  ++ ++GpnG+GkstL k+l+g+e+    sG+ik+ 
  MMETSP1061-20121228|179_1 316 EVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEP--DSGTIKVG 374
                6899*******************************************9875..46666654 PP

  == domain 4    score: 22.1 bits;  conditional E-value: 3.4e-07
  TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerlleli 210
                 sGGe+ r ++ +l+    +++iLDe    lDv+ l+ + eg+ +++       +++h + +l+ +
  MMETSP1061-20121228|179_1 437 LSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFAG---CAFVVSHDRYMLDRL 499
                7****************************************9988864...567899999999876 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   5.7e-09     3e-07     464     507 ..       5      48 ..       3      52 .. 0.91
   2 !   25.1   0.0   2.3e-08   1.2e-06     587     672 ..     151     238 ..     112     244 .. 0.90
   3 !   35.8   0.1   1.4e-11   7.3e-10     462     511 ..     323     372 ..     294     386 .. 0.82
   4 !    8.3   0.0    0.0029      0.15     586     643 ..     434     491 ..     430     503 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 5.7e-09
  TIGR03797 464 dgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPes 507
                 ++++Ld+++l+  pG  ++ivG  GsGKStll+++ g ++   
  MMETSP1061-20121228|179_1   5 KSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYD 48 
                5789*********************************9998655 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 2.3e-08
  TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirnad.rilvleeGr.vveqGsyeeLl 672
                ++lSGG + R  + r l +   +ll+DE T  LD ++ a     l+k++ t + i H    ++n+   il l+ G+    +G+ye  l
  MMETSP1061-20121228|179_1 151 KNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQGTVVCITHDRYFLNNCAgWILELDRGKgFPHEGNYETFL 238
                79*******************************************************8888888652799999998456889998765 PP

  == domain 3    score: 35.8 bits;  conditional E-value: 1.4e-11
  TIGR03797 462 ekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvl 511
                +   +l +dd+s++  p   v++vG+ G+GKStl+++L+g e+P+sG++ 
  MMETSP1061-20121228|179_1 323 SFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIK 372
                44667899****************************************96 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.0029
  TIGR03797 586 ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAH 643
                 g+lSGG r R  +A+ l    +++++DE    LD +  +   e l +++    v+ H
  MMETSP1061-20121228|179_1 434 VGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFAGCAFVVSH 491
                689********************************99999999999888888888887 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00018    0.0094      16      51 ..       8      43 ..       5      53 .. 0.88
   2 ?    2.1   0.0       0.5        27      84     126 ..      64     105 ..      56     127 .. 0.69
   3 !   22.9   0.0   2.3e-07   1.2e-05     138     221 ..     147     228 ..     129     244 .. 0.83
   4 !   41.6   0.1   4.5e-13   2.4e-11       2      69 ..     314     382 ..     313     390 .. 0.91
   5 !   12.1   0.0   0.00047     0.025     135     210 ..     428     501 ..     389     509 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00018
  TIGR03411 16 kalndlslsveegelrviiGpnGaGkttllDvitGk 51
               k l++++ls  +g    i+G nG+Gk+tll v++G 
  MMETSP1061-20121228|179_1  8 KILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGV 43
               56899****************************996 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.5
  TIGR03411  84 qkpsvfeeltvlenlelalkadksvlallfarlskeekeriee 126
                q+p v+e  tv+en++ a+ka++ vl+   ++  k ++  i++
  MMETSP1061-20121228|179_1  64 QEP-VLEYPTVQENIDEAMKASQAVLDEYNEKSMKLADPDITD 105
                444.88999****************998887776655544432 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 2.3e-07
  TIGR03411 138 dkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvl 221
                ++   +Ls G+k +  +  ll+++ ++lllDeP+  + +e  +     l + +   +vv + hD  f+++ a  +  l +Gk +
  MMETSP1061-20121228|179_1 147 NALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ--GTVVCITHDRYFLNNCAGWILELDRGKGF 228
                456789****************************9998887777777777765..4899***********99999999888755 PP

  == domain 4    score: 41.6 bits;  conditional E-value: 4.5e-13
  TIGR03411   2 iLevedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltkl 69 
                ++ev++++ sf+    ++dls+s+ +  +  ++GpnGaGk+tl+ +++Gk +pd+G++++ ++ +++++
  MMETSP1061-20121228|179_1 314 VVEVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGETvKMVSV 382
                67899******************************************************9998777665 PP

  == domain 5    score: 12.1 bits;  conditional E-value: 0.00047
  TIGR03411 135 ekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelae 210
                +++++k g+Ls G++ + +++ ll    ++++lDeP   +  e  ++  e l + a+     vv hD   +++l +
  MMETSP1061-20121228|179_1 428 QSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFAGC--AFVVSHDRYMLDRLCT 501
                5678899*******************************99999999999988888764..5678899877777765 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00033     0.017      22      52 ..      20      49 ..       8      52 .. 0.84
   2 !   36.6   0.0   1.2e-11   6.5e-10     129     226 ..     150     244 ..     147     298 .. 0.83
   3 !   25.1   0.0   3.9e-08   2.1e-06       4      60 ..     319     377 ..     317     388 .. 0.87
   4 !   18.4   0.0   4.2e-06   0.00023     128     203 ..     433     504 ..     412     510 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00033
  TIGR02142 22 gkgvtalFGrsGsGktslirliaGLtrpdeg 52
               g   +++ G  GsGk++l++++aG+ + ++g
  MMETSP1061-20121228|179_1 20 G-AKIGIVGLNGSGKSTLLKVMAGVDTEYDG 49
               4.5689******************9887766 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 1.2e-11
  TIGR02142 129 pgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGr.vkaagkleevlaskdls 226
                +++LsGGek R a+ R lL + ++Ll+DeP   LD +     + +Le   ++++  ++ + H+   ++  a  ++ l+ G+    +g+ e  l  k+ +
  MMETSP1061-20121228|179_1 150 VKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAE----SIAWLETYLDKFQGTVVCITHDRYFLNNCAGWILELDRGKgFPHEGNYETFLDMKNKR 244
                789********************************75....5889999999999999******999999999999999998345567777666666555 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 3.9e-08
  TIGR02142   4 rlekrlgdfeL..dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgev 60 
                +l+k +gd  L  d++++lp  g++++ G  G+Gk++li+++ G + pd+g i++ ++v
  MMETSP1061-20121228|179_1 319 NLKKSFGDRLLidDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGETV 377
                56777788777668999*************************************98876 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 4.2e-06
  TIGR02142 128 lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvv 203
                ++g+LsGGe+ R  +++ l +  +++++DeP   LD     e+l  Le+   ++      vsH+   + rl  +++
  MMETSP1061-20121228|179_1 433 KVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDV----EVLRSLEEGLLNFAGCAFVVSHDRYMLDRLCTHIL 504
                689********************************96....67777777777777777778888888888877776 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   9.5e-17     5e-15      16     218 ..       5     226 ..       3     227 .. 0.67
   2 !   15.4   0.0   4.2e-05    0.0022       2      67 ..     315     376 ..     314     395 .. 0.79
   3 !   21.8   0.0   4.8e-07   2.6e-05     117     206 ..     411     497 ..     390     509 .. 0.78

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 9.5e-17
  TIGR02982  16 lrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvl.gke.........lk.gasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavglee..................rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnril.dvadrivkmedGk 218
                + k++l +inl+  pg  + + G  GsGk tll +++g+ +  +G  + l g++         l+    ++++ +  +    ++ ++n  ++  a  ++       ++ ++++ +++ e+l  ++  ++                    +   ++lsgG k+r a+ r l ++ +++l dePt  ld++s   +    + l + qg t++ +thd   l + a  i+++++Gk
  MMETSP1061-20121228|179_1   5 KSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLARPLpGASigylsqepvLEyPTVQENIDEAMKASQAVLDEYNEKSMKLADPDIT------DE-EMTQVMEDIEKLNDQIEAGDlweldrvvsramdslrvpDGNALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLE---TYLDKFQG-TVVCITHDRYFLnNCAGWILELDRGK 226
                5799*************************************99997665423443332222332101222333333333344444444433333333332......22.33333333333333333333566666777778889777778999***********************************9855444...44455566.68899***9988358999****9996 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 4.2e-05
  TIGR02982   2 ikirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgk 67 
                +++ +l+  +g+    + ++ d+++++ p  iv + Gp G+Gk tl+ ++ g  +  +G++kv ++
  MMETSP1061-20121228|179_1 315 VEVTNLKKSFGD----RLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGET 376
                566666666664....4567899***************************************9654 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 4.8e-07
  TIGR02982 117 eakakaeelleavgleer.ldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild 206
                +++  +++ l+  g++ +  + k  +lsgG + r  +a+ l a  ++++ deP   ld +  r++ e l + a   g++ ++v hd  +ld
  MMETSP1061-20121228|179_1 411 TQSIMSRAYLSWFGFKGQsQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFA---GCA-FVVSHDRYMLD 497
                5566788889999987651567889*********************************988777666555544...666.57899998887 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.4e-07   7.2e-06      23      65 ..       6      48 ..       2      67 .. 0.91
   2 !   16.3   0.0   2.1e-05    0.0011     139     228 ..     141     226 ..      72     237 .. 0.82
   3 !   46.7   0.1   1.2e-14   6.2e-13      25     224 ..     328     506 ..     316     510 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.4e-07
  TIGR02769 23 rkavldnvslsleeGetvallGrsGaGkstlarlllGlekPak 65
                k++ldn++ls   G  ++++G  G+Gkstl +++ G++   +
  MMETSP1061-20121228|179_1  6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYD 48
               689*********************************9987655 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 2.1e-05
  TIGR02769 139 lrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGq 228
                lr  + + l ++lsGG  +r ++ r l  +  +++lde    ld       ++ l+   ++f  +++ ithd    ++ a  +l ld+G+
  MMETSP1061-20121228|179_1 141 LRVPDGNALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAE----SIAWLETYLDKFQGTVVCITHDRYFLNNCAGWILELDRGK 226
                444455667799****************************999965....456666666666667899****998888888888888876 PP

  == domain 3    score: 46.7 bits;  conditional E-value: 1.2e-14
  TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkk.lkqefGlaylfithdlrlvqkfaqrvlvl 224
                 ++d++s+sl     v+++G  GaGkstl ++l+G e+P +G+++  G+ ++ +              v q+ +  +++ k+v e i+e l ++   +   +     + l+  +++ +  + +  +lsGG   r+ +a+ l +  ++i+lde   +ld+    ++l+ l++ l + +G a+ +++hd  + ++++ ++l  
  MMETSP1061-20121228|179_1 328 LLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKV-GETVKMVS-------------VGQERMDELDSDKTVFEEISEGLDEI---ELGTQSIMSRAYLSWFGFKGQSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDV----EVLRSLEEgLLNFAGCAF-VVSHDRYMLDRLCTHILAC 506
                568999*****999******************************85.66664443.............567777889999********998765...556677777889********************************************999996....688888873555667766.59***********998765 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   6.2e-11   3.3e-09      12     210 ..       6     194 ..       3     258 .. 0.73
   2 !   43.2   0.0   7.7e-14   4.1e-12     275     496 ..     310     501 ..     309     508 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 6.2e-11
  TIGR03269  12 glevlknisleleeGevlGilGksGaGksvllhllrGlde.y....eptsGkiiyhvalcekcgyverpskvGekcpkcgeklekeevdfwdlsdklkkrlkkriaimlqrtfalyeedtvlenvlealeeigyeakeavkravelleevklehrithiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhea 210
                 +++l ni+l +  G  +Gi+G  G+Gks ll+++ G+d  y    +p  G  i  ++  +  +y  +++++ e  +  +  l++ +   ++l+d+  ++       m      + e+   l++ +ea +   +e +  v+ra++ l   +       + ++lsGGek+r  l r l  +  +ll dept  ld ++   +   
  MMETSP1061-20121228|179_1   6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTeYdglaRPLPGASIGYLSQEPVLEYPTVQENIDEAMKASQAVLDEYNEKSMKLADPDITDE-----EMT----QVMEDIEKLNDQIEAGDL--WELDRVVSRAMDSLRVPDG----NALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETY 194
                6899**********************************952533335677888888888888888888888877777666666665555555554433221.....122....345666667777777554..5566799999988876554....45789*********************************9887655544 PP

  == domain 2    score: 43.2 bits;  conditional E-value: 7.7e-14
  TIGR03269 275 vgediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteai.glelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcd 496
                +g++++ v +++k +   dr +   +d++s+ +  + i G+vG  GaGk+tl k+l+G  ep sG +  +vG+  v m   g   + r            +l + +tv+e+++e +  +el ++  + +a   l   Gf+ +  ++       +ls Ger r  la++l    +++ildep+  +d    v+v +s+ +   ++     +vshd  ++  +c 
  MMETSP1061-20121228|179_1 310 LGNEVVEVTNLKKSFG--DRLL---IDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTI--KVGE-TVKMVSVG---QERM----------DELDSDKTVFEEISEGLdEIELGTQSIMSRA--YLSWFGFKGQSQQSK----VGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLD----VEVLRSLEEGLLNFAGCAFVVSHDRYMLDRLCT 501
                5788888889888874..6665...69**************************************76..6675.69999988...3333..........3466788999999998834899999888888..48899**99887763....4689*****************************99....678888888888899999999***999998886 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   4.8e-06   0.00026     493     526 ..       6      39 ..       2      45 .. 0.90
   2 ?   -0.4   0.0         1        55     557     577 ..      59      79 ..      57     102 .. 0.84
   3 !   27.4   0.0   4.1e-09   2.2e-07     617     699 ..     152     236 ..     146     245 .. 0.83
   4 !   38.2   0.1   2.1e-12   1.1e-10     494     686 ..     327     506 ..     322     520 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.8e-06
  TIGR00958 493 dkpvlkdLtftlepGevvalVGPsGsGKStvaal 526
                +k++l +++++  pG  + +VG +GsGKSt   +
  MMETSP1061-20121228|179_1   6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKV 39 
                578***************************8765 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 1
  TIGR00958 557 valVgqEPvlfsgsvreNiaY 577
                ++   qEPvl   +v+eNi  
  MMETSP1061-20121228|179_1  59 IGYLSQEPVLEYPTVQENIDE 79 
                56789**************65 PP

  == domain 3    score: 27.4 bits;  conditional E-value: 4.1e-09
  TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvekad.kilvlkkg.svvelGthkq 699
                 lsgG k r A+ R L+ +  +L+LDe t  LDae+ + l++   + + tv+ i+h     +++   il l +g    + G++++
  MMETSP1061-20121228|179_1 152 NLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQGTVVCITHDRYFLNNCAgWILELDRGkGFPHEGNYET 236
                69****************************************9999999******987777766515667777733455566655 PP

  == domain 4    score: 38.2 bits;  conditional E-value: 2.1e-12
  TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPv..l.fsgsvreNiaYGltkte..deevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe.sksaksrtvlliahrLstvekadkilvl 686
                + ++ dL+f+l p  +v +VGP+G GKSt + +l    +P++G++ + +  +          k++ VgqE +  l   ++v e i+ Gl++ e   +++++ a  +    F     +  + +vg     lsgG + r  +A+ L     ++iLDe    LD+ev + l+e   ++++ + ++  +r  + + + +il  
  MMETSP1061-20121228|179_1 327 RLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGET-V----------KMVSVGQERMdeLdSDKTVFEEISEGLDEIElgTQSIMSRAYLSWF-GF---KGQSQQSKVG----NLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEgLLNFAGCAFVVSHDRYMLDRLCTHILAC 506
                56789****************************************99653.3..........56779999753332678999********999877888888777653.23...3344556666....59************************************999977788888777777777777777777765 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   3.2e-07   1.7e-05     342     379 ..       3      40 ..       1      49 [. 0.93
   2 !   28.0   0.0     3e-09   1.6e-07     453     545 ..     134     226 ..     106     242 .. 0.76
   3 !   21.9   0.0   2.2e-07   1.2e-05     333     392 ..     316     373 ..     309     390 .. 0.86
   4 !   13.6   0.0   6.8e-05    0.0036     467     513 ..     433     479 ..     414     493 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 3.2e-07
  TIGR02203 342 pgddrealdsislkveaGevvalvGrsGsGkstlvnll 379
                p++++++ld+i+l+  +G  + +vG  GsGkstl++++
  MMETSP1061-20121228|179_1   3 PDKSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVM 40 
                78999*****************************9987 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 3e-09
  TIGR02203 453 vdklpeGldtevGeng.skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek.aDrivvlddGk 545
                v +  + l  + G+    +LsGG + R a+ R ll +  +L+LDe t  LD+es   +   L++++   t + i h    +++ a  i+ ld Gk
  MMETSP1061-20121228|179_1 134 VSRAMDSLRVPDGNALvKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ--GTVVCITHDRYFLNNcAGWILELDRGK 226
                5555555556666554147************************************99999999986..467777774443333266666677666 PP

  == domain 3    score: 21.9 bits;  conditional E-value: 2.2e-07
  TIGR02203 333 efrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeill 392
                e+ n++  ++  dr  +d++s+++ +  +v +vG+ G+Gkstl+++l    epdsG i +
  MMETSP1061-20121228|179_1 316 EVTNLKKSFG--DRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKV 373
                5566666665..46789***************************************9965 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 6.8e-05
  TIGR02203 467 ngskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaL 513
                + ++LsGG R R  +a+ l     ++iLDe    LD e  R + + L
  MMETSP1061-20121228|179_1 433 KVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGL 479
                6689*************999999***************999988776 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.6e-05    0.0019      14      51 ..       7      44 ..       4      52 .. 0.88
   2 !   30.0   0.0   1.3e-09   6.8e-08     143     213 ..     151     219 ..     129     248 .. 0.82
   3 !   22.6   0.0   2.2e-07   1.2e-05       2      48 ..     315     361 ..     314     397 .. 0.87
   4 !   15.9   0.0   2.6e-05    0.0014     142     189 ..     434     481 ..     405     500 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.6e-05
  TIGR00972 14 kealkdvnleikknkvtaliGpsGcGkstllrslnrln 51
               k+ l+++nl+++  + ++++G  G+Gkstll+ +  + 
  MMETSP1061-20121228|179_1  7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVD 44
               789*****************************997665 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.3e-09
  TIGR00972 143 lsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdkt 213
                 +LsGG ++r ++ r l  + ++lLlDePt  LD+++ + +e  +++ +   t+v +th+  + + ++  +
  MMETSP1061-20121228|179_1 151 KNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ--GTVVCITHDRYFLNNCAGWI 219
                58*******************************************9876..599*****977766666555 PP

  == domain 3    score: 22.6 bits;  conditional E-value: 2.2e-07
  TIGR00972   2 levknlklfygekealkdvnleikknkvtaliGpsGcGkstllrsln 48 
                +ev+nlk ++g++  ++d++++++   +++++Gp G+Gkstl++ l 
  MMETSP1061-20121228|179_1 315 VEVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLI 361
                7899***************************************9985 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 2.6e-05
  TIGR00972 142 alsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqe 189
                  +LsGG + r  +a+ l    ++++lDeP+  LD +  +++ee + +
  MMETSP1061-20121228|179_1 434 VGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLN 481
                347**********************************99999987655 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.1e-05   0.00061     353     386 ..       7      40 ..       2      50 .. 0.90
   2 !   32.4   0.0   1.6e-10   8.8e-09     475     551 ..     151     226 ..     129     244 .. 0.82
   3 !   32.8   0.3   1.2e-10   6.3e-09     352     512 ..     326     472 ..     282     491 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.1e-05
  TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllell 386
                +k ld+++l+  pG ++ +vG  G+Gkstll+++
  MMETSP1061-20121228|179_1   7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVM 40 
                789****************************987 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 1.6e-10
  TIGR02204 475 vtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlk.adrivvldkGr 551
                 +LsGG k+r a+ r +l++  +LLLde t+ Ldaes   +++ l++     t + i h    + + a  i+ ld+G+
  MMETSP1061-20121228|179_1 151 KNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ--GTVVCITHDRYFLNNcAGWILELDRGK 226
                47****************************************9999874..477777775444444156677777776 PP

  == domain 3    score: 32.8 bits;  conditional E-value: 1.2e-10
  TIGR02204 352 dqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefiskl...peGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaese 512
                d++ +d+l++++ p   v +vGP GaGkstl+++l+   +P sG+i+++   ++ ++    +er+     d ++f +     i  G      +e+e  +++  +  ++s +    +  ++++G    +LsGG + r  +a+ + +  ++++Lde  + Ld e  
  MMETSP1061-20121228|179_1 326 DRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVG-ETVKMVSVG--QERMDELDSDKTVFEE-----ISEG-----LDEIELGTQSIMSRAYLSWFgfkGQSQQSKVG----NLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVL 472
                67789******************************************95.444444433..3566678889998854.....3323.....23444444444444455544000233344444....69************9999999*******999998865 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   5.2e-08   2.8e-06      14      51 ..       7      44 ..       4      51 .. 0.90
   2 !   17.0   0.0   6.3e-06   0.00033     383     436 ..     134     185 ..      81     204 .. 0.82
   3 !   23.6   0.1   6.5e-08   3.5e-06       2      49 ..     315     362 ..     314     384 .. 0.93
   4 !   19.4   0.0   1.2e-06   6.4e-05     389     437 ..     422     470 ..     393     489 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 5.2e-08
  TIGR02633 14 vkaldnidlklraGeivslcGenGaGkstlmkvlsgvy 51
                k ldni+l   +G  +++ G nG+Gkstl+kv++gv 
  MMETSP1061-20121228|179_1  7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVD 44
               5789********************************95 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 6.3e-06
  TIGR02633 383 ieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdv 436
                ++++++ l+v   + +  + +lsGG+++++ l++lll n  +l+ldept  +d 
  MMETSP1061-20121228|179_1 134 VSRAMDSLRVP--DGNALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDA 185
                44555555444..34456889****************************99986 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 6.5e-08
  TIGR02633   2 lemkgivkkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                +e+ ++ k+fg+   +d++++ l +  iv++ G nGaGkstl+k+l g
  MMETSP1061-20121228|179_1 315 VEVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIG 362
                5788999**************************************987 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 1.2e-06
  TIGR02633 389 rlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvG 437
                 +  k  s +  +++lsGG++++a lakll    +++ildep+  +dv 
  MMETSP1061-20121228|179_1 422 WFGFKGQSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVE 470
                556678888899*********************************9996 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.3e-05    0.0023      16      51 ..      12      47 ..       4      52 .. 0.86
   2 !   30.4   0.0   1.1e-09   5.9e-08     125     203 ..     149     223 ..     137     227 .. 0.87
   3 !   35.6   0.2   2.9e-11   1.5e-09      23     162 ..     339     470 ..     323     484 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.3e-05
  TIGR01277 16 efdlsveaGervailGesGaGkstllnliaGflepa 51
               + +ls   G ++ i+G  G+Gkstll+++aG  +  
  MMETSP1061-20121228|179_1 12 NINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEY 47
               57899999***********************87765 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 1.1e-09
  TIGR01277 125 lpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvve 203
                l ++lsGG+++r al r l++++ +llldep   ld     e +a +++  d+ + t++ +th+   + + a  ++ ++
  MMETSP1061-20121228|179_1 149 LVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLD----AESIAWLETYLDKFQGTVVCITHDRYFLNNCAGWILELD 223
                6789***************************99888....5899*******************9776666666665555 PP

  == domain 3    score: 35.6 bits;  conditional E-value: 2.9e-11
  TIGR01277  23 aGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekve.dvarqvGiady.lerlpeelsGGqrqrvalarclvrekpillldepfsaldpk 162
                   +v ++G+ GaGkstl++++ G +ep sG+ikv +  ++ s   er        ++l +  tv ++i+ Gl+  + l +  +  +  +     G +    +   ++lsGG+r+r  la+ l     +++ldep   ld  
  MMETSP1061-20121228|179_1 339 PAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGETVKMVSVGQERM-------DELDSDKTVFEEISEGLDE-IELGT--QSIMSrAYLSWFGFKGQsQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVE 470
                456899******************************9999999998883.......6788899999999999974.45543..3333303345578765414556799*******************************964 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.3e-05    0.0034      20      57 ..       6      43 ..       3      52 .. 0.91
   2 !   28.4   0.0   3.2e-09   1.7e-07     116     200 ..     131     209 ..     126     227 .. 0.85
   3 !   38.9   0.1   2.1e-12   1.1e-10       9     181 ..     315     479 ..     309     493 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.3e-05
  TIGR03258 20 arvvlddlsleieaGellallGksGsGkttllravaGf 57
               ++ +ld++ l   +G  + ++G  GsGk+tll+++aG 
  MMETSP1061-20121228|179_1  6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGV 43
               5789********************************96 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 3.2e-09
  TIGR03258 116 aervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdr 200
                ++ v+ a+  +++ d ++ l ++lsGG ++r al r l  + d+llldep   lda+  a +   l ++     + tv+++thdr
  MMETSP1061-20121228|179_1 131 DRVVSRAMDSLRVPD-GNALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKF-----QGTVVCITHDR 209
                566777888888887.5568899*********************************8777776666655.....469*******8 PP

  == domain 3    score: 38.9 bits;  conditional E-value: 2.1e-12
  TIGR03258   9 vvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvqlsdaa.arlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveel 181
                v + +l+ ++g r ++ddls+ + +  ++ ++G+ G+Gk+tl++++ G  ++d G++ v+++         r          l    +v+e+++ Gl         i  r    l   ++   + +    +lsGG ++r  la+ l    ++++ldep   ld ++  s+ e l
  MMETSP1061-20121228|179_1 315 VEVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGETVKMVSVGQERMD-------ELDSDKTVFEEISEGLDEIELGTQSIMSRAY--LSWFGFKGQSqQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGL 479
                67889999****************************************************99655555555543.......4667889**************9999999975..55666654440455679*********************************9998887765 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   9.5e-14   5.1e-12     487     698 ..       7     240 ..       5     243 .. 0.74
   2 !   21.7   0.0   2.5e-07   1.3e-05     479     536 ..     318     376 ..     267     390 .. 0.81
   3 !   13.8   0.0   6.3e-05    0.0034     607     663 ..     432     488 ..     399     509 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 9.5e-14
  TIGR01193 487 sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeil.lngkslkdidkhelrql..inylPqePfifsGsilenl....llgakenvsqeeikkave.iaeikddieklplG.yqtelse........ea....ssisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvah.rlsvakksdkiivldeGkii.eqGshkellke 698
                +++l++i+l+     ki +vGl GsGkstl k++ +   + +G    l g s+  ++++ + ++  ++    e +  s ++l++     +  a +++++ee+++++e i  ++d+ie  +l  ++  +s         ++     ++sgG k+r al r ll + ++l+lde t +ld       +e  l   + t++ ++h r  + + +  i+ ld+Gk    +G+++++l+ 
  MMETSP1061-20121228|179_1   7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLARpLPGASIGYLSQEPVLEYptVQENIDEAMKASQAVLDEYneksMKLADPDITDEEMTQVMEdIEKLNDQIEAGDLWeLDRVVSRamdslrvpDGnalvKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIA-WLETYLDKFQGTVVCITHdRYFLNNCAGWILELDRGKGFpHEGNYETFLDM 240
                79***********************************99999976449999999999998877622444456777788889986522225557889999999999863666888888644321222222211111111222233689*******************************86554.56666666688999999968888999999******9965267888888875 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2.5e-07
  TIGR01193 479 vsysyGygse.vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngk 536
                 + +  +g++ +++d+s+++     + +vG  G+Gkstl+k+l++  +++sG+i+++++
  MMETSP1061-20121228|179_1 318 TNLKKSFGDRlLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGET 376
                344555666515799****************************************9875 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 6.3e-05
  TIGR01193 607 eeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktii 663
                ++  ++sgG + r  la+ l +  +++ilde + +ld+ + + + e ll++   + +
  MMETSP1061-20121228|179_1 432 SKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFAGCAFV 488
                46689*********************************9999999999998655544 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.7e-06   0.00031      14      55 ..       8      49 ..       5      56 .. 0.90
   2 !   24.2   0.0   6.7e-08   3.6e-06     143     242 ..     149     244 ..     134     252 .. 0.83
   3 !   26.4   0.0   1.4e-08   7.4e-07       1      66 [.     315     379 ..     315     402 .. 0.89
   4 !    8.6   0.0    0.0038       0.2     142     183 ..     432     473 ..     416     505 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.7e-06
  TIGR03005 14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideG 55
               ++ld+++l+  +G k+ ++G  GsGkst+l+++  ++t  +G
  MMETSP1061-20121228|179_1  8 KILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDG 49
               68******************************9888776555 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 6.7e-08
  TIGR03005 143 lpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpkeer 242
                l  +lsGG+k+r a+ r l  +  +ll+de+t  ld e +      l     + + t++ +th+  f ++ a  +l +d+Gk   +    e f + k++r
  MMETSP1061-20121228|179_1 149 LVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIA----WLETYLDKFQGTVVCITHDRYFLNNCAGWILELDRGKGFPHEGNYETFLDMKNKR 244
                5678********************************87665....556666677889************************9765544455555555555 PP

  == domain 3    score: 26.4 bits;  conditional E-value: 1.4e-08
  TIGR03005   1 vrisdvtkrfgeltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyh 66 
                v+++++ k fg+  ++d+l++++ +   v ++Gp G+Gkst++++l+  e+ d G+ikv ge++  
  MMETSP1061-20121228|179_1 315 VEVTNLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKV-GETVKM 379
                6788999****************************************************.776554 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 0.0038
  TIGR03005 142 alpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelve 183
                +   +lsGG+++r  +a+ l    +++++de++  ld e++ 
  MMETSP1061-20121228|179_1 432 SKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLR 473
                45568********************************99765 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     6e-05    0.0032      22      54 ..       8      40 ..       4      47 .. 0.92
   2 !   25.8   0.0   2.6e-08   1.4e-06     149     216 ..     152     216 ..     131     223 .. 0.78
   3 !   25.4   0.0   3.3e-08   1.8e-06      23      84 ..     329     387 ..     314     397 .. 0.80
   4 !    9.9   0.0    0.0019       0.1     150     187 ..     437     474 ..     429     507 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6e-05
  TIGR02324 22 pvlkevsleveaGelvalsGksGaGkstllksl 54
               ++l++++l+   G  + + G  G+Gkstllk++
  MMETSP1061-20121228|179_1  8 KILDNINLSFYPGAKIGIVGLNGSGKSTLLKVM 40
               6899***************************86 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 2.6e-08
  TIGR02324 149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelva 216
                  sGGek+R  + r l+ ++ +LLLdePt  Lda  ++     +++   +  +++ i hd+   + +a
  MMETSP1061-20121228|179_1 152 NLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDK--FQ-GTVVCITHDRYFLNNCA 216
                68*******************************9999754444443..33.46889999987766666 PP

  == domain 3    score: 25.4 bits;  conditional E-value: 3.3e-08
  TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserev 84 
                 ++++s+++    +v + G+ GaGkstl+k+l ++  p+sg+i v     +v++v++ + ++
  MMETSP1061-20121228|179_1 329 LIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGE---TVKMVSVGQERM 387
                578999*************************************9855...555555555554 PP

  == domain 4    score: 9.9 bits;  conditional E-value: 0.0019
  TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkv 187
                 sGGe+ R  +a+ l a   +++LdeP   Ld    + 
  MMETSP1061-20121228|179_1 437 LSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRS 474
                7*****************************98654443 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     2e-06   0.00011       1      83 [.      10      85 ..      10     126 .. 0.68
   2 !   20.6   0.0   1.1e-06   5.8e-05     111     174 ..     149     208 ..     111     213 .. 0.85
   3 !   37.5   0.1   7.6e-12   4.1e-10       2     161 ..     331     483 ..     330     493 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2e-06
  TIGR01184  1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvv.fqnysllpwltvrenialavdavl 83
               l++++l+   g  i ++g  g gkstll ++ag++   +g          +p p   +  + +  +l + tv+eni  a++a +
  MMETSP1061-20121228|179_1 10 LDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLA--------RPLPGASIGyLSQEPVLEYPTVQENIDEAMKASQ 85
               799*******************************98776632........3333322220233345666666666666665554 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 1.1e-06
  TIGR01184 111 rpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                 +++lsgg k+r a+ r l    ++llldep   lda +   l+  l    ++ + tv+ +thd
  MMETSP1061-20121228|179_1 149 LVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYL----DKFQGTVVCITHD 208
                5689*********************************8877765544....5567899999998 PP

  == domain 3    score: 37.5 bits;  conditional E-value: 7.6e-12
  TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsgavil.egkeitepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglr.eaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiv 161
                +d+++++    ++ ++g  g gkstl+ ++ g e+p sg++++ e  ++   g +rm       l   +tv e+i   +d++   +    +  + +  ++  g++ ++++ ++++lsgg ++r  +a+ l    ++++ldep   ld     +l+e ll+ +
  MMETSP1061-20121228|179_1 331 DDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVgETVKMVSVGQERMDE-----LDSDKTVFEEISEGLDEIELGT----QSIMSRAYLSWFGFKgQSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFA 483
                6677777788899****************************98456678899*****75.....556799****999988876554....45555677888998736788899***********************************9999****999875 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   0.00013    0.0069      15      54 ..       4      43 ..       2      59 .. 0.87
   2 !   19.1   0.0   2.1e-06   0.00011     136     201 ..     148     209 ..     138     244 .. 0.79
   3 !   40.5   0.0   6.8e-13   3.6e-11      21     210 ..     330     502 ..     314     510 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 0.00013
  TIGR02314 15 dkkikaldnvslfvpkgqifgvigasgagkstlircvnll 54
               dk  k ldn++l    g  +g++g  g+gkstl++ +  +
  MMETSP1061-20121228|179_1  4 DKSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGV 43
               566788********99*****************9987655 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 2.1e-06
  TIGR02314 136 sypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithem 201
                +   nlsgg+k+r a+ r l  +  +ll de t  ld  +   + + l     +++ t++ ith+ 
  MMETSP1061-20121228|179_1 148 ALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYL----DKFQGTVVCITHDR 209
                5568*********************************75544333333....34555777777765 PP

  == domain 3    score: 40.5 bits;  conditional E-value: 6.8e-13
  TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvgl.sdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricde 210
                +d++s+ +p   i+gv+g  gagkstli+ +   e+p sg++ v  +   t++   + ++r +        +l s +tvf++++  l+  +   + i  +    l+  g+ ++ ++s   nlsgg+++r  +a+ l +   +++ de +  ld    +s+ e l +         ++++h+  ++ r+c +
  MMETSP1061-20121228|179_1 330 IDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVG-E---TVKMVSVGQERMD--------ELDSDKTVFEEISEGLDEIELGTQSIMSRA--YLSWFGFkGQSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFA----GCAFVVSHDRYMLDRLCTH 502
                799*************************************99884.4...4555556667654........7899************88888888888875..6888887346788999**********************************999999877665432....3445566666666666665 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.1     0.002      0.11       1      24 [.      25      48 ..      25      57 .. 0.88
   2 !   25.0   0.0   3.6e-08   1.9e-06      95     162 ..     147     210 ..     127     240 .. 0.81
   3 !   38.0   0.1   4.1e-12   2.2e-10       2     136 ..     346     472 ..     345     493 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.002
  TIGR01187  1 lLGpsGsGkttlLrllaGleelds 24
               ++G  GsGk+tlL+++aG+++   
  MMETSP1061-20121228|179_1 25 IVGLNGSGKSTLLKVMAGVDTEYD 48
               57999*************998655 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 3.6e-08
  TIGR01187  95 krkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqe 162
                +  +++lsGG ++r al r + ++ ++LLlDep   LD +    + + l ++q     tvv +thD+ 
  MMETSP1061-20121228|179_1 147 NALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ----GTVVCITHDRY 210
                556789********************************987776666665555....59999999975 PP

  == domain 3    score: 38.0 bits;  conditional E-value: 4.1e-12
  TIGR01187   2 LGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefa.krkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLr 136
                +Gp G+Gk+tl+++l G ee+dsG i++++  v  v+  +  ++       L    tv+e ++ gL   +++ + i +r    L+   +++ + ++k+ +lsGG r r  la+ +    ++++lDep   LD ++ 
  MMETSP1061-20121228|179_1 346 VGPNGAGKSTLIKMLIGKEEPDSGTIKVGE-TVKMVSVGQERMDE------LDSDKTVFEEISEGLDEIELGTQSIMSRA--YLSWFGFKGQSqQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVL 472
                7**************************976.46666666655554......66789*********************995..78988888765168999********************************98754 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0037      0.19       4      35 ..      18      49 ..      15      74 .. 0.81
   2 !   19.7   0.0   2.3e-06   0.00012     109     172 ..     148     208 ..     131     221 .. 0.82
   3 !   21.2   0.1     8e-07   4.3e-05       6      42 ..     340     376 ..     335     386 .. 0.87
   4 !   20.7   0.0   1.1e-06     6e-05     108     161 ..     431     484 ..     426     507 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0037
  TIGR03771  4 dkGellgllGpnGaGkttllrailglikvakG 35
                +G  +g++G nG+Gk+tll+ + g+ ++  G
  MMETSP1061-20121228|179_1 18 YPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDG 49
               57889****************99997665555 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 2.3e-06
  TIGR03771 109 rpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthd 172
                  v +lsGG+++r  + r l  +  +llldep   ld  s+  l   + ++     +++  thd
  MMETSP1061-20121228|179_1 148 ALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ---GTVVCITHD 208
                56889********************************999988877766654...467777777 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 8e-07
  TIGR03771   6 GellgllGpnGaGkttllrailglikvakGsvkvagk 42 
                  ++g++GpnGaGk+tl++ ++g  ++  G++kv+  
  MMETSP1061-20121228|179_1 340 AGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGET 376
                6689*****************************9874 PP

  == domain 4    score: 20.7 bits;  conditional E-value: 1.1e-06
  TIGR03771 108 drpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelag 161
                +  vG+lsGG+r+r  +a+ l    ++++ldep   ld+    +l e + ++ag
  MMETSP1061-20121228|179_1 431 QSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFAG 484
                5689**********************************9999999887766665 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.1e-05    0.0022      37      75 ..       6      44 ..       2      59 .. 0.91
   2 !   28.2   0.0   2.8e-09   1.5e-07     163     202 ..     149     188 ..     136     207 .. 0.87
   3 !   12.9   0.0   0.00012    0.0065      36      79 ..     325     368 ..     309     389 .. 0.81
   4 !   10.1   0.0   0.00083     0.044     163     199 ..     433     469 ..     426     482 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.1e-05
  TIGR00955 37 ekellknvsGvaksGellAvlGsSGaGKtTLlnalafrs 75
                k++l n+   +++G  + ++G  G+GK+TLl+++a  +
  MMETSP1061-20121228|179_1  6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVD 44
               699*******************************99765 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 2.8e-09
  TIGR00955 163 rvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsa 202
                 vk lSgGe++R al   ll++  +L++DEPT  LD+ s 
  MMETSP1061-20121228|179_1 149 LVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESI 188
                589*********************************9875 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 0.00012
  TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekgl 79 
                + + l+ + s  + +  ++ v+G+ GaGK+TL+++l  ++e ++
  MMETSP1061-20121228|179_1 325 GDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDS 368
                66778888999999999*******************99988765 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 0.00083
  TIGR00955 163 rvkglSgGerkRlalaselltdPilLfcDEPTsGLDs 199
                +v  lSgGer R  la+ l     ++++DEP   LD 
  MMETSP1061-20121228|179_1 433 KVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDV 469
                4557*************99999*************95 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   7.7e-12   4.1e-10     465     654 ..       6     225 ..       1     235 [. 0.79
   2 !   16.2   0.1   1.1e-05   0.00059     466     500 ..     327     361 ..     315     385 .. 0.88
   3 !   12.1   0.0   0.00019      0.01     583     660 .]     436     514 ..     398     514 .. 0.92

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 7.7e-12
  TIGR00954 465 gdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfker............glsdkdLeqiLeev.kLedlleregg...............wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvsh.rksLwkyHeylLkld.g 654
                 +++++++++    G ++ i+G nG GKs l ++++++   y gl    +   + y+ q P +   t+ + i   ++ ++                +++d++++q++e + kL+d +e +                     +     LsgGek R a+ Rl+       +LDE t+ +  +    l   + +++ t++ ++h r  L +   ++L+ld g
  MMETSP1061-20121228|179_1   6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLARPLPGASIGYLSQEPVLEYPTVQENIDEAMKASQAVLDeyneksmkladpDITDEEMTQVMEDIeKLNDQIEAGDLweldrvvsramdslrVPDGNALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQGTVVCITHdRYFLNNCAGWILELDrG 225
                5678899999999*******************************998888999*****************99877765543322233448888888999999999999884477666554447788888888554442222334578*****************************99888888888888888889999988344555666777777744 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.1e-05
  TIGR00954 466 dvlieeLsfevksGnhlLiiGPnGcGKsslfRilg 500
                  li++Lsf ++    + ++GPnG GKs l ++l 
  MMETSP1061-20121228|179_1 327 RLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLI 361
                579***************************99875 PP

  == domain 3    score: 12.1 bits;  conditional E-value: 0.00019
  TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvsh.rksLwkyHeylLkldgkGkykf 660
                 LsgGe+ R  +A+l+    + ++LDE  + + v+v   l e + ++    + vsh r  L +  +++L  +g+ k++f
  MMETSP1061-20121228|179_1 436 NLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFAGCAFVVSHdRYMLDRLCTHILACEGDSKWHF 514
                69****************************************9999988888999856788899*************98 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.9e-09   1.6e-07     349     546 ..       8     226 ..       3     247 .. 0.69
   2 !   32.6   0.1   1.3e-10     7e-09     351     506 ..     330     471 ..     312     492 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.9e-09
  TIGR01192 349 qgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqil.idgvdiatvtre......slrksiatvfqd.agllnrsirenirlgredatdeevveaakaa.aasdfie.......kr..lkgydtlvgergn....rlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvre.adlvlfldqgr 546
                + + ++ +    g  + ivg  g+gk+tl+ ++  v     g    + g  i  +++e      ++++ i   ++    +l+    + ++l   d tdee+ +  +     +d ie       +r  +++ d+l    gn    +lsgge++r a+ r +l n  +l+lde t  ld e+ a +   +d ++   t   i+h    + + a  +l ld+g+
  MMETSP1061-20121228|179_1   8 KILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLARpLPGASIGYLSQEpvleypTVQENIDEAMKAsQAVLDEYNEKSMKLADPDITDEEMTQVMEDIeKLNDQIEagdlwelDRvvSRAMDSLRVPDGNalvkNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ--GTVVCITHDRYFLNNcAGWILELDRGK 226
                5566777788889999****************999988888865438899998888872222223455555554431457788888899999999999998776554312344443111111234213455655555565233368**********************************999999999764..466667775555544256777777776 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 1.3e-10
  TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqili.dgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvet 506
                + d+sf       v +vgp gagk+tli +l    +p+sg i + + v++ +v +e + +            ++++ e+i+ g ++  +    ++  + a   +   + ++ +++vg    +lsgger+r  +a+ +     +++lde +  ldve 
  MMETSP1061-20121228|179_1 330 IDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVgETVKMVSVGQERMDE---------LDSDKTVFEEISEGLDEIELGT--QSIMSRAYLSWFGFKGQSQQSKVG----NLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEV 471
                679999999999******************************994467888888776643.........2235566666665544332221..122222333444556666667776....59************9988999*************97 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.5e-06   0.00013      21      50 ..      13      43 ..       5      52 .. 0.82
   2 ?    4.7   0.0     0.074       3.9     131     172 ..     142     184 ..     130     222 .. 0.77
   3 !   28.4   0.0   4.3e-09   2.3e-07       3      62 ..     314     375 ..     312     394 .. 0.90
   4 ?    6.8   0.0     0.017       0.9     139     176 ..     434     473 ..     416     506 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.5e-06
  TIGR02323 21 vsf.lypGevlgivGesGsGkstllkalaar 50
               +++ +ypG  +givG  GsGkstllk +a+ 
  MMETSP1061-20121228|179_1 13 INLsFYPGAKIGIVGLNGSGKSTLLKVMAGV 43
               56657**********************9985 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.074
  TIGR02323 131 eidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlv 172
                 ++ +    +++sGG ++r  + r l+ +  ++++ ept  l 
  MMETSP1061-20121228|179_1 142 RVPDGNALVKNLSGGEKRRTALCRLLLENHDMLLLdEPTNHLD 184
                556666677899**************9988888877***9873 PP

  == domain 3    score: 28.4 bits;  conditional E-value: 4.3e-09
  TIGR02323   3 llevselsksygskkgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyes 62 
                ++ev++l ks+g++  +  +sf l p  ++g+vG  G+Gkstl+k l ++  +d+G+++  +
  MMETSP1061-20121228|179_1 314 VVEVTNLKKSFGDRLLIDdLSFsLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGE 375
                789************9999***999********************************98755 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.017
  TIGR02323 139 paafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqa 176
                  ++sGG ++r q+a+ l +  +++++ ep+  l v v  
  MMETSP1061-20121228|179_1 434 VGNLSGGERNRAQLAKLLKAGGNMIILdEPSNDLdVEVLR 473
                5579******************9999989*9999776643 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00026     0.014       6      39 ..       7      40 ..       4      44 .. 0.91
   2 !   20.2   0.0   1.1e-06   5.7e-05     126     189 ..     149     208 ..     112     214 .. 0.82
   3 !   26.3   0.3   1.5e-08   8.2e-07       4     174 ..     325     481 ..     322     493 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00026
  TIGR01186  6 klgvndvdleieeGeiiviiGlsGsGkstlvrll 39
               k+ +++++l+ + G  i i+Gl GsGkstl++++
  MMETSP1061-20121228|179_1  7 KKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVM 40
               677899*************************987 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.1e-06
  TIGR01186 126 yPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                  ++lsGG ++r  l r l  + d+ll+de+   ld      l        +k q t+v ithd
  MMETSP1061-20121228|179_1 149 LVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWL----ETYLDKFQGTVVCITHD 208
                4578********************************8555554....45556777899999999 PP

  == domain 3    score: 26.3 bits;  conditional E-value: 1.5e-08
  TIGR01186   4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvk 174
                G +l ++d+++++    i+ ++G+ G+Gkstl+++l    eP +G i + Ge++  +s  +       ++        l   +t+ ++is gl+  ++  q    +a   l   ++  + +++   +lsGG + r  la+ l a  +++++de+   ld  +  +l + l++
  MMETSP1061-20121228|179_1 325 GDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKV-GETVKMVSVGQE------RM------DELDSDKTVFEEISEGLDEIELGTQSIMSRA--YLSWFGFkGQSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLN 481
                67778899999999999*****************************988.666655554444......21......2466789*******99999999999888877..58899994455667789*********************************9998899888775 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   0.00083     0.044      42      75 ..      12      45 ..       6      51 .. 0.86
   2 !   15.6   0.0   2.3e-05    0.0012     161     224 ..     149     208 ..     144     210 .. 0.80
   3 !   19.6   0.2   1.4e-06   7.6e-05     156     211 ..     428     483 ..     313     508 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00083
  TIGR03415 42 dasldveeGeilvlmGlsGsGkssllravnglnp 75
               +++l+   G  + ++Gl GsGks+ll+ + g+++
  MMETSP1061-20121228|179_1 12 NINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDT 45
               67888888888899*************9998865 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 2.3e-05
  TIGR03415 161 kvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                 v++lsGG ++r  l r +  + d+ll+deP   ld    a l   l ++q     t+v ++hd
  MMETSP1061-20121228|179_1 149 LVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWLETYLDKFQ----GTVVCITHD 208
                5789*******************************9876666665554444....455555555 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 1.4e-06
  TIGR03415 156 eWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelq 211
                + ++ kvg+lsGG + r  la+ +  + +++++deP   ld  +   l + ll++ 
  MMETSP1061-20121228|179_1 428 QSQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFA 483
                56789*************************************99999***999985 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   4.4e-05    0.0023    1230    1265 ..       5      40 ..       2      51 .. 0.89
   2 !   11.2   0.0   0.00017    0.0092    1354    1390 ..     153     189 ..     104     235 .. 0.71
   3 !   26.3   0.0   4.8e-09   2.6e-07     441     602 ..     329     494 ..     309     526 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.4e-05
  TIGR01271 1230 agravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                 + + +l+++ +s  +g ++g++g  gsgkstll  +
  MMETSP1061-20121228|179_1    5 KSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVM 40  
                 5688****************************9876 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00017
  TIGR01271 1354 lsnghkqlmclarsilskakillldepsafldpvtlq 1390
                 ls g k+   l+r +l    +llldep+ +ld  ++ 
  MMETSP1061-20121228|179_1  153 LSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIA 189 
                 4556666666666666666666666666666655554 PP

  == domain 3    score: 26.3 bits;  conditional E-value: 4.8e-09
  TIGR01271 441 vlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpg.....tikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifescl....ckllanktri 602
                ++ ++s+ l    ++ v g  g+gks+l+ m++g+ ep  g ik    + + +     m       t+ ++i  gl   e   +s++        ++ +  k +   ++ g  lsgg+r r  la+ +    ++ +ld p + ldv   + + e  l    c +++++ r 
  MMETSP1061-20121228|179_1 329 LIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGETVKMVSVGQERMDEldsdkTVFEEISEGLDEIELGTQSIMSRA----YLSWFGFKGQSQQSKVG-NLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLnfagCAFVVSHDRY 494
                467999**************************************9999988887777776511112666666667777777777777665....56899999999888888.7********************************97655444332222226666666555 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0073      0.39       3      34 ..      11      42 ..       9      50 .. 0.84
   2 !   18.1   0.0   5.6e-06    0.0003     125     203 ..     152     226 ..     108     248 .. 0.83
   3 !    9.3   0.0    0.0028      0.15       1      38 [.     329     366 ..     329     386 .. 0.84
   4 !   14.9   0.0   5.3e-05    0.0028     125     195 ..     436     502 ..     431     508 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0073
  TIGR02770  3 qdvnlslkrgkvlalvGesGsGksltalailg 34
               +++nls   g  +++vG  GsGks+  + + g
  MMETSP1061-20121228|179_1 11 DNINLSFYPGAKIGIVGLNGSGKSTLLKVMAG 42
               799*********************87665555 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 5.6e-06
  TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGk 203
                +lsGG   R  +   ll +  +l+ DePt  lD+ + a +    e+  +k++ +++ ithD   + ++a  ++ +++Gk
  MMETSP1061-20121228|179_1 152 NLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAESIAWL----ETYLDKFQGTVVCITHDRYFLNNCAGWILELDRGK 226
                69*******99888899999*************9876654....555556667899*************9999999998 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0028
  TIGR02770   1 lvqdvnlslkrgkvlalvGesGsGksltalailglldk 38 
                l++d+++sl    ++++vG  G+Gks+  + ++g  ++
  MMETSP1061-20121228|179_1 329 LIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEP 366
                689***********************998888776554 PP

  == domain 4    score: 14.9 bits;  conditional E-value: 5.3e-05
  TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaelade 195
                +lsGG   R  +a  l +   ++i DeP+ dlDv    evL+ lee   +++   ++++hD  ++ +l  +
  MMETSP1061-20121228|179_1 436 NLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDV----EVLRSLEEGLLNFAGCAFVVSHDRYMLDRLCTH 502
                69*******99999999999*************7....68999999888888888999**98888777665 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.7e-05     0.002     357     392 ..      10      45 ..       3      59 .. 0.88
   2 !   11.5   0.0   0.00031     0.017     457     544 ..     141     224 ..     133     228 .. 0.75
   3 !   24.3   0.0   4.2e-08   2.3e-06     368     513 ..     341     480 ..     327     503 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.7e-05
  TIGR01194 357 lGpidlriasGelvyivGenGcGkstliklllGlyi 392
                l  i+l    G  + ivG nG Gkstl+k++ G+  
  MMETSP1061-20121228|179_1  10 LDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDT 45 
                7789****************************9865 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00031
  TIGR01194 457 vkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryf..eladrliklad 544
                ++v d+n     +ls G+++r al    le+  +lllde +   d     + + e   d k +G t++ i+hd ryf  + a  ++ l  
  MMETSP1061-20121228|179_1 141 LRVPDGNAL-VKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAES--IAWLETYLD-KFQG-TVVCITHD-RYFlnNCAGWILELDR 224
                566677665.789****************************9999764..444444434.5566.89999*97.6663345666666655 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 4.2e-08
  TIGR01194 368 elvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldq..attylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeell 513
                 +v +vG nG Gkstlik+l+G   p +G + + Ge+v   s ++ r  +  + +d  +f+++ +  ++ +  ++   ++ yls ++++ +      + s   +ls G+r r  l         +++lde + d d    r + e ll
  MMETSP1061-20121228|179_1 341 GIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKV-GETVKMVSVGQER--MDELDSDKTVFEEISEGLDEIELGTQSimSRAYLSWFGFKGQS-----QQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLL 480
                6899**************************976.8999988888766..5677788888888876544444444431256799999987654.....456677899999999999888888889999999999999988888777776 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0016     0.083     653     719 ..       9      77 ..       4     111 .. 0.66
   2 !   11.7   0.0   0.00012    0.0064     760     795 ..     152     187 ..     139     280 .. 0.83
   3 !   25.2   0.0     1e-08   5.5e-07     654     800 ..     330     476 ..     315     495 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0016
  TIGR00957 653 tlngltlsipegalvavvgqvgcgkssllsallaemdkvegkva.lkg.svayvpqqawiqndslreni 719
                 l++++ls   ga + +vg  g gks+ll  + +     +g    l g s+ y+ q+  ++  +++eni
  MMETSP1061-20121228|179_1   9 ILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDTEYDGLARpLPGaSIGYLSQEPVLEYPTVQENI 77 
                456666777777777777777777777776666555555554432433266677777777777777766 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00012
  TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahv 795
                nlsgg+k+r +l+r +  + d+ lld+p   +da  
  MMETSP1061-20121228|179_1 152 NLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAES 187
                9***************************99999864 PP

  == domain 3    score: 25.2 bits;  conditional E-value: 1e-08
  TIGR00957 654 lngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvp..qqawiq...ndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhif 800
                ++ l++s+p   +v vvg+ g gks+l+  l+++ +   g +++  +v  v   q+   +   ++++ e+i  g +  e    + + + a l+ + +    +++++g    nlsgg+++r  la+ + +  ++ +ld+p   +d  v + + 
  MMETSP1061-20121228|179_1 330 IDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGETVKMVSvgQERMDEldsDKTVFEEISEGLDEIELG-TQSIMSRAYLSWFGFKGQSQQSKVG----NLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLE 476
                57899***************************************9999887521433322111345556666555444444.4556677899999998888888888....9*****************************99999877665 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.022       1.2      11      38 ..       9      36 ..       2      48 .. 0.63
   2 !   12.6   0.0   0.00011    0.0059     827     903 ..     151     222 ..     141     232 .. 0.84
   3 ?    5.4   0.0     0.017      0.88     623     653 ..     330     360 ..     286     391 .. 0.74
   4 !   14.2   0.0   3.8e-05     0.002     475     552 ..     424     496 ..     411     504 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.022
  TIGR00630 11 nLknidvelprdklvvitGlsGsGkssL 38
                L ni++++   + + i Gl GsGks+L
  MMETSP1061-20121228|179_1  9 ILDNINLSFYPGAKIGIVGLNGSGKSTL 36
               3555666665555555666666666655 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00011
  TIGR00630 827 ttLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldvi.ksaDyiidl 903
                + LsGGe +r  L++ L ++   + + +lDePt  L  + i+ L + l+++     tvv i h+   +  +a +i++l
  MMETSP1061-20121228|179_1 151 KNLSGGEKRRTALCRLLLEN---HDMLLLDEPTNHLDAESIAWLETYLDKFQ---GTVVCITHDRYFLnNCAGWILEL 222
                68*************99875...45889***************999998875...48999999987762578999998 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.017
  TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLindi 653
                + d++ s+p   ++ + G+ g+GkstLi+ +
  MMETSP1061-20121228|179_1 330 IDDLSFSLPPAGIVGVVGPNGAGKSTLIKML 360
                578999999999***************9865 PP

  == domain 4    score: 14.2 bits;  conditional E-value: 3.8e-05
  TIGR00630 475 GLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeeti 552
                G++  s + ++  lsGGe++r +la+ + +g  G + +lDePs  L     + L e    l +      vv hD  ++
  MMETSP1061-20121228|179_1 424 GFKGQSQQSKVGNLSGGERNRAQLAKLLKAG--GNMIILDEPSNDLDVEVLRSLEE---GLLNFAGCAFVVSHDRYML 496
                5555566677889999999999999999876..99999999998875544444444...4445555667777877665 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00044     0.023     775     811 ..       6      42 ..       2      50 .. 0.84
   2 !   10.3   0.0   0.00036     0.019     203     243 ..     146     186 ..     140     204 .. 0.93
   3 !    7.7   0.0    0.0022      0.12     756     823 ..     295     376 ..     219     391 .. 0.64
   4 ?    4.6   0.0     0.019         1     184     242 ..     415     469 ..     371     477 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00044
  TIGR00956 775 krvlLdevdGwvkPGkltALmGasGAGkttLlnvLae 811
                ++++Ld+++  + PG    ++G  G Gk tLl v+a+
  MMETSP1061-20121228|179_1   6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAG 42 
                5789999999999999999999999999999999886 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00036
  TIGR00956 203 GndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsa 243
                Gn lv+ +sGGe++R ++   l+ +  ++++D+ t  LD+ 
  MMETSP1061-20121228|179_1 146 GNALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAE 186
                9**************************************85 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0022
  TIGR00956 756 g................eeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv..ttGvitegdr 823
                +                +e+ e+     ++k + ++r l+d+++  + P  +  ++G  GAGk tL+ +L ++   + G i+ g+ 
  MMETSP1061-20121228|179_1 295 ElrnagqiyippgprlgNEVVEVT----NLKKSFGDRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEepDSGTIKVGET 376
                144455555555555555565555....3456678999*******************************98765226788876654 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.019
  TIGR00956 184 ladvvlaiyGLs.htkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDs 242
                +   +l+ +G +  +++ kvGn     +sGGer R  +a  l a++++ ++D+ +  LD 
  MMETSP1061-20121228|179_1 415 MSRAYLSWFGFKgQSQQSKVGN-----LSGGERNRAQLAKLLKAGGNMIILDEPSNDLDV 469
                6667777888763567788888.....8***************************99995 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0     0.002       0.1    1951    1990 ..       6      45 ..       1      65 [. 0.72
   2 !    5.3   0.0    0.0067      0.36    2046    2105 ..     129     187 ..     104     210 .. 0.80
   3 !   14.0   0.0   1.6e-05   0.00085     932    1109 ..     318     484 ..     308     503 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.002
  TIGR01257 1951 sspavdrlcvgvrpgecfgllgvngagktttfkmltgdtt 1990
                 s   +d + +   pg  +g++g+ng+gk+t +k+++g  t
  MMETSP1061-20121228|179_1    6 SKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVMAGVDT 45  
                 5556677777777888888888888888888887777554 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0067
  TIGR01257 2046 eiekvanwsikslglslyadrlagtysggnkrklstaialigcpplvlldepttgmdpqa 2105
                 e+++v   +++sl +    ++l    sgg+kr+ + +  l+    ++lldept  +d ++
  MMETSP1061-20121228|179_1  129 ELDRVVSRAMDSLRVP-DGNALVKNLSGGEKRRTALCRLLLENHDMLLLDEPTNHLDAES 187 
                 5667777777777654.4567888899999999999999999999999999999888764 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 1.6e-05
  TIGR01257  932 knlvkifepsgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamledtglhhk.rneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrs 1109
                  nl k f    r  +d l  ++  + i  ++g ngagk+t + +l g   p sgt+ vg             s+g   + + l    tv e i     l         +   a l   g++ + ++ +  +lsgg + +  +a  +    ++++ldep+  +d    rs+ + ll++  
  MMETSP1061-20121228|179_1  318 TNLKKSFG--DRLLIDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIGKEEPDSGTIKVGETVKMV-------SVGQE-RMDELDSDKTVFEEIS--EGLDEIELGTQSIMSRAYLSWFGFKGQsQQSKVGNLSGGERNRAQLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGLLNFAG 484 
                 45555553..3566777777777777777777777777777777777777777777777432221.......22221.2233334444444442..23333333333344456666666654413345566777766666666666666666777777777776666666666666644 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   0.00016    0.0087       4      27 ..      21      44 ..      19      51 .. 0.88
   2 ?   -1.9   0.0        10   5.3e+02      74     100 ..     134     160 ..     124     182 .. 0.77
   3 !   12.3   0.1   0.00044     0.024       6      41 ..     343     377 ..     340     388 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 0.00016
  TIGR00231  4 ikivivGhvdvGKstLlnsllknk 27
               +ki+ivG  ++GKstLl+ +++ +
  MMETSP1061-20121228|179_1 21 AKIGIVGLNGSGKSTLLKVMAGVD 44
               69***************9988766 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 10
  TIGR00231  74 vreverslevvdivilvldveeglekq 100
                v ++  sl+v d+++lv+ ++ g+++ 
  MMETSP1061-20121228|179_1 134 VSRAMDSLRVPDGNALVKNLSGGEKRR 160
                67788999********99988887443 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 0.00044
  TIGR00231   6 ivivGhvdvGKstLlnsllknkisiteskpgvtrdy 41 
                +++vG  ++GKstL++ l++++  +++ +  v++++
  MMETSP1061-20121228|179_1 343 VGVVGPNGAGKSTLIKMLIGKE-EPDSGTIKVGETV 377
                89******************99.6666555555555 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0022      0.12      19      54 ..       5      40 ..       2      46 .. 0.88
   2 !   12.6   0.0   0.00022     0.012      24      56 ..     330     362 ..     313     397 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0022
  TIGR00750 19 eakellkrilpktGrahvvGltGvPGaGkstlvekl 54
               ++k++l++i  +      +G+ G+ G Gkstl++ +
  MMETSP1061-20121228|179_1  5 KSKKILDNINLSFYPGAKIGIVGLNGSGKSTLLKVM 40
               589999999999999999**************9765 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00022
  TIGR00750  24 lkrilpktGrahvvGltGvPGaGkstlveklie 56 
                ++ ++ +   a +vG+ G  GaGkstl++ li 
  MMETSP1061-20121228|179_1 330 IDDLSFSLPPAGIVGVVGPNGAGKSTLIKMLIG 362
                5556666667889***************99974 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.1     0.049       2.6      18      37 ..      14      34 ..       9      37 .. 0.74
   2 ?   -0.6   0.2       0.8        43     680     725 ..      76     121 ..      64     135 .. 0.45
   3 ?   -3.7   0.0       6.9   3.7e+02    1089    1102 ..     150     163 ..     147     164 .. 0.81
   4 ?   -2.2   0.9       2.4   1.3e+02     844     868 ..     244     268 ..     233     298 .. 0.36
   5 !   16.8   0.1   4.4e-06   0.00024      11      37 ..     322     354 ..     322     358 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.049
  TIGR02168 18 tinfe.kgitgiVGPNGcGKS 37
                + f  +  +giVG NG+GKS
  MMETSP1061-20121228|179_1 14 NLSFYpGAKIGIVGLNGSGKS 34
               5556523458**********9 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.8
  TIGR02168 680 eieeleeeieeleekiaelekelkelekeleeleeeleklrkelee 725
                +i+e+ +  +++ ++++e++++l++ + + ee+++ +e+++k  ++
  MMETSP1061-20121228|179_1  76 NIDEAMKASQAVLDEYNEKSMKLADPDITDEEMTQVMEDIEKLNDQ 121
                3333333333333333333333333333333333333333332222 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 6.9
  TIGR02168 1089 lslLSGGEKALtAl 1102
                 ++ LSGGEK  tAl
  MMETSP1061-20121228|179_1  150 VKNLSGGEKRRTAL 163 
                 678******88886 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 2.4
  TIGR02168 844 eleeqieeleeeiesleaeieelee 868
                +lee+++e+++ ++++++e+e +++
  MMETSP1061-20121228|179_1 244 RLEEEKKEQTAAAKAVANELEWIRT 268
                1111111111111111111111111 PP

  == domain 5    score: 16.8 bits;  conditional E-value: 4.4e-06
  TIGR02168  11 KSFadkttin...fe...kgitgiVGPNGcGKS 37 
                KSF+d+  i+   f+   +gi+g+VGPNG GKS
  MMETSP1061-20121228|179_1 322 KSFGDRLLIDdlsFSlppAGIVGVVGPNGAGKS 354
                8999888765444433369************** PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0013     0.071     150     178 ..      13      41 ..       6      47 .. 0.84
   2 ?    5.2   0.0     0.038         2     160     177 ..     343     360 ..     323     367 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0013
  TIGR02729 150 lkleLklladvglvGlpnaGkStllsavs 178
                ++l++   a +g+vGl  +GkStll++++
  MMETSP1061-20121228|179_1  13 INLSFYPGAKIGIVGLNGSGKSTLLKVMA 41 
                6666667799***************9987 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.038
  TIGR02729 160 vglvGlpnaGkStllsav 177
                vg+vG   aGkStl++ +
  MMETSP1061-20121228|179_1 343 VGVVGPNGAGKSTLIKML 360
                99***9*********975 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1     0.016      0.88       2      22 ..      22      42 ..      21      46 .. 0.87
   2 !   10.3   0.1    0.0013     0.071       2      24 ..     342     364 ..     341     370 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.016
  TIGR00436  2 fvailGrpnvGKSTLlNkllg 22
               +++i+G    GKSTLl  + g
  MMETSP1061-20121228|179_1 22 KIGIVGLNGSGKSTLLKVMAG 42
               79**************88776 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.0013
  TIGR00436   2 fvailGrpnvGKSTLlNkllgqk 24 
                 v+++G+  +GKSTL+  l+g++
  MMETSP1061-20121228|179_1 342 IVGVVGPNGAGKSTLIKMLIGKE 364
                79*****************9975 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0086      0.46     143     167 ..      17      41 ..       7      48 .. 0.83
   2 !    7.0   0.0    0.0082      0.44     149     177 ..     343     371 ..     332     396 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0086
  TIGR02546 143 vgeGqRiGifaeaGvGkstLlsmia 167
                   G +iGi +  G+GkstLl+ +a
  MMETSP1061-20121228|179_1  17 FYPGAKIGIVGLNGSGKSTLLKVMA 41 
                55699****************9876 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0082
  TIGR02546 149 iGifaeaGvGkstLlsmiargakadvivl 177
                +G+ +  G+GkstL++m++ +++ d   +
  MMETSP1061-20121228|179_1 343 VGVVGPNGAGKSTLIKMLIGKEEPDSGTI 371
                89*****************9998887655 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.088       4.7     442     458 ..      25      41 ..      22      51 .. 0.86
   2 !    8.8   0.0    0.0016     0.085     437     458 ..     340     361 ..     330     365 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.088
  TIGR00929 442 IfGptgsGKTvllnfll 458
                I+G +gsGK++ll++++
  MMETSP1061-20121228|179_1  25 IVGLNGSGKSTLLKVMA 41 
                89***********9765 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0016
  TIGR00929 437 lGhTlIfGptgsGKTvllnfll 458
                +G + ++Gp+g+GK++l+++l+
  MMETSP1061-20121228|179_1 340 AGIVGVVGPNGAGKSTLIKMLI 361
                577789**************97 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.027       1.4     136     163 ..      16      43 ..       8      50 .. 0.83
   2 ?    6.2   0.0     0.014      0.74     143     175 ..     343     374 ..     335     395 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.027
  TIGR03498 136 tlcrGqRlGifaGsGvGkstllsmlara 163
                +   G ++Gi    G Gkstll ++a  
  MMETSP1061-20121228|179_1  16 SFYPGAKIGIVGLNGSGKSTLLKVMAGV 43 
                556799*****************99975 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.014
  TIGR03498 143 lGifaGsGvGkstllsmlaraaaaDvvvialvG 175
                +G+    G Gkstl+ ml+ +++ D   i  vG
  MMETSP1061-20121228|179_1 343 VGVVGPNGAGKSTLIKMLIGKEEPDSGTIK-VG 374
                6888899***************99987775.45 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.048       2.6    1213    1246 ..     160     193 ..     158     216 .. 0.75
   2 ?    4.3   0.0     0.025       1.3      33      48 ..     345     360 ..     323     362 .. 0.81
   3 ?    0.7   0.0      0.31        16    1215    1248 ..     446     479 ..     443     485 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.048
  TIGR00606 1213 rlalaevfclnCgiialdePttnldrekieslai 1246
                 r al   +  n  ++ ldePt  ld e i  l  
  MMETSP1061-20121228|179_1  160 RTALCRLLLENHDMLLLDEPTNHLDAESIAWLET 193 
                 678888899999*************998866544 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.025
  TIGR00606  33 lvGPnGaGkttiieal 48 
                +vGPnGaGk t+i  l
  MMETSP1061-20121228|179_1 345 VVGPNGAGKSTLIKML 360
                69***********876 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.31
  TIGR00606 1215 alaevfclnCgiialdePttnldrekieslaial 1248
                  la  +     +i ldeP  +ld e + sl   l
  MMETSP1061-20121228|179_1  446 QLAKLLKAGGNMIILDEPSNDLDVEVLRSLEEGL 479 
                 57777888889**************999987666 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1      0.27        14       4      21 ..      23      40 ..      20      48 .. 0.85
   2 !    9.6   0.1    0.0028      0.15       3      22 ..     342     361 ..     340     392 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.27
  TIGR02322  4 ilvvGpsGaGKDtlldla 21
               i +vG  G+GK tll++ 
  MMETSP1061-20121228|179_1 23 IGIVGLNGSGKSTLLKVM 40
               679************875 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0028
  TIGR02322   3 lilvvGpsGaGKDtlldlar 22 
                ++ vvGp GaGK tl++++ 
  MMETSP1061-20121228|179_1 342 IVGVVGPNGAGKSTLIKMLI 361
                678*************9865 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.5     0.046       2.5       2      20 ..      23      41 ..      22      45 .. 0.92
   2 !    8.5   0.1    0.0068      0.36       1      21 [.     342     362 ..     342     366 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.046
  TIGR00152  2 igltGgigsGKstvakilk 20
               ig++G  gsGKst++k+++
  MMETSP1061-20121228|179_1 23 IGIVGLNGSGKSTLLKVMA 41
               9**************9875 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0068
  TIGR00152   1 iigltGgigsGKstvakilkd 21 
                i+g++G  g GKst++k+l  
  MMETSP1061-20121228|179_1 342 IVGVVGPNGAGKSTLIKMLIG 362
                89****************975 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0    0.0086      0.46     134     159 ..      17      42 ..       9      48 .. 0.85
   2 ?    3.6   0.2     0.098       5.2     140     166 ..     343     369 ..     339     381 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0086
  TIGR03496 134 vgkGqrlglfagsGvGKsvLlgmlar 159
                   G ++g++   G GKs+Ll ++a 
  MMETSP1061-20121228|179_1  17 FYPGAKIGIVGLNGSGKSTLLKVMAG 42 
                55699*******************96 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.098
  TIGR03496 140 lglfagsGvGKsvLlgmlarateadvv 166
                +g++   G GKs+L+ ml+ ++e d  
  MMETSP1061-20121228|179_1 343 VGVVGPNGAGKSTLIKMLIGKEEPDSG 369
                7999999***********999887765 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0078      0.42     132     158 ..      15      41 ..       6      47 .. 0.85
   2 ?    2.9   0.1      0.17       9.2     140     166 ..     343     369 ..     335     381 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0078
  TIGR03497 132 ltvGkGqrvGifagsGvGkstllgmia 158
                l+   G ++Gi    G Gkstll ++a
  MMETSP1061-20121228|179_1  15 LSFYPGAKIGIVGLNGSGKSTLLKVMA 41 
                5666799****************9998 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.17
  TIGR03497 140 vGifagsGvGkstllgmiarnakadin 166
                vG+    G Gkstl+ m+  + + d  
  MMETSP1061-20121228|179_1 343 VGVVGPNGAGKSTLIKMLIGKEEPDSG 369
                899999***********9877766655 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.059       3.1     191     213 ..      22      44 ..      18      52 .. 0.87
   2 ?    1.2   0.2      0.55        29     256     302 ..      81     127 ..      72     152 .. 0.86
   3 ?    4.1   0.0     0.073       3.9     192     213 ..     343     364 ..     339     371 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.059
  TIGR03156 191 tvalvGYTNaGKstllnaltkae 213
                ++++vG   +GKstll+ +++ +
  MMETSP1061-20121228|179_1  22 KIGIVGLNGSGKSTLLKVMAGVD 44 
                799**************998765 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.55
  TIGR03156 256 veaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeei 302
                ++a +a L+e +e  + l   D++dee+++ +e++e++ ++++a + 
  MMETSP1061-20121228|179_1  81 MKASQAVLDEYNEKSMKLADPDITDEEMTQVMEDIEKLNDQIEAGDL 127
                6788999******************************9999998775 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.073
  TIGR03156 192 valvGYTNaGKstllnaltkae 213
                v++vG   aGKstl+++l+++e
  MMETSP1061-20121228|179_1 343 VGVVGPNGAGKSTLIKMLIGKE 364
                899**************99875 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       4.6   2.5e+02       6      22 ..      25      41 ..      22      47 .. 0.81
   2 ?    9.5   0.0    0.0029      0.15       6      25 ..     345     364 ..     341     407 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 4.6
  TIGR03263  6 isgpsGvGKstlvkkll 22
               i+g  G GKstl+k + 
  MMETSP1061-20121228|179_1 25 IVGLNGSGKSTLLKVMA 41
               56788*******99775 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0029
  TIGR03263   6 isgpsGvGKstlvkklleek 25 
                ++gp G+GKstl+k+l+ ++
  MMETSP1061-20121228|179_1 345 VVGPNGAGKSTLIKMLIGKE 364
                78**************9844 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0      0.08       4.2     176     197 ..      21      42 ..       4      47 .. 0.79
   2 ?    4.9   0.0     0.044       2.4     178     199 ..     343     364 ..     316     368 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.08
  TIGR03594 176 ikiaiiGrpNvGKStLvNallg 197
                 ki+i+G   +GKStL+  + g
  MMETSP1061-20121228|179_1  21 AKIGIVGLNGSGKSTLLKVMAG 42 
                5788888888888888877765 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.044
  TIGR03594 178 iaiiGrpNvGKStLvNallgee 199
                ++++G   +GKStL+  l+g+e
  MMETSP1061-20121228|179_1 343 VGVVGPNGAGKSTLIKMLIGKE 364
                6678877788888888888876 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1      0.26        14       2      18 ..      23      39 ..      23      44 .. 0.88
   2 ?    6.3   0.1     0.037         2       1      21 [.     342     362 ..     342     389 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.26
  TIGR00176  2 lqivgykdsGKTtliek 18
               ++ivg  +sGK tl++ 
  MMETSP1061-20121228|179_1 23 IGIVGLNGSGKSTLLKV 39
               689***********985 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.037
  TIGR00176   1 vlqivgykdsGKTtlieklvk 21 
                ++++vg+ + GK tli+ l+ 
  MMETSP1061-20121228|179_1 342 IVGVVGPNGAGKSTLIKMLIG 362
                789**************9985 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.2       1.3        71     127     142 ..      25      40 ..      18      45 .. 0.84
   2 ?    7.6   0.0    0.0077      0.41     120     144 ..     338     362 ..     328     370 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 1.3
  TIGR01420 127 vtGptGsGKsttlAsl 142
                ++G  GsGKst l  +
  MMETSP1061-20121228|179_1  25 IVGLNGSGKSTLLKVM 40 
                7899*******98766 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0077
  TIGR01420 120 kkrGlilvtGptGsGKsttlAslid 144
                 ++G++ v+Gp G+GKst +  li 
  MMETSP1061-20121228|179_1 338 PPAGIVGVVGPNGAGKSTLIKMLIG 362
                579***************9998886 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2      0.22        12      20      40 ..      16      37 ..      10      41 .. 0.76
   2 ?    2.4   0.3     0.095         5     257     305 ..      73     123 ..      63     136 .. 0.68
   3 ?   -2.3   0.4       2.5   1.3e+02     411     434 ..     244     267 ..     234     293 .. 0.40
   4 ?    9.3   0.0   0.00078     0.042       6      43 ..     316     360 ..     313     361 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.22
  TIGR02169 20 pflkgftv.isGpNGSGKSNii 40
               +f+ g  + i+G NGSGKS ++
  MMETSP1061-20121228|179_1 16 SFYPGAKIgIVGLNGSGKSTLL 37
               566666433**********875 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.095
  TIGR02169 257 leeeieelekeleeiekkleelnkkiek..lgeeeqlavkekleelkaeie 305
                ++e+i+e  k ++++ ++ +e + k+ +   ++ee+++v e++e+l+ +ie
  MMETSP1061-20121228|179_1  73 VQENIDEAMKASQAVLDEYNEKSMKLADpdITDEEMTQVMEDIEKLNDQIE 123
                556666666666666666666666665322577888888888888877776 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 2.5
  TIGR02169 411 rlleelkrleeelaelkaelerie 434
                rl ee+k+++++ + + +ele i+
  MMETSP1061-20121228|179_1 244 RLEEEKKEQTAAAKAVANELEWIR 267
                222222222222222222222222 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.00078
  TIGR02169   6 elenF.KSFgkkkeI...pfl...kgftvisGpNGSGKSNiiDal 43 
                e++n  KSFg +  I   +f+    g+  ++GpNG+GKS +i +l
  MMETSP1061-20121228|179_1 316 EVTNLkKSFGDRLLIddlSFSlppAGIVGVVGPNGAGKSTLIKML 360
                66665358887776632235444469999************9987 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1       1.4        73     120     140 ..      22      42 ..       7      46 .. 0.87
   2 ?    2.3   0.0      0.36        19     204     266 ..      80     142 ..      71     146 .. 0.88
   3 ?    5.2   0.1     0.046       2.5     123     147 ..     345     369 ..     335     384 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 1.4
  TIGR03596 120 ralvvGiPNvGKStliNrlak 140
                ++ +vG+   GKStl+  +a+
  MMETSP1061-20121228|179_1  22 KIGIVGLNGSGKSTLLKVMAG 42 
                6779***********988875 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.36
  TIGR03596 204 alfllellkekypeelkerykleeeeeeeeelleeiakkrglllkggeldleraaeillkelr 266
                a+++ + + ++y+e+ ++  + + ++ee ++++e+i k ++ +++g+  +l+r+++  ++ lr
  MMETSP1061-20121228|179_1  80 AMKASQAVLDEYNEKSMKLADPDITDEEMTQVMEDIEKLNDQIEAGDLWELDRVVSRAMDSLR 142
                77888899999999999999********************************99998887776 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.046
  TIGR03596 123 vvGiPN.vGKStliNrlakkkvakvg 147
                vvG PN  GKStli  l++k+  ++g
  MMETSP1061-20121228|179_1 345 VVG-PNgAGKSTLIKMLIGKEEPDSG 369
                444.6658***********9976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       297  (0.0724037); expected 82.0 (0.02)
Passed bias filter:                      264  (0.0643588); expected 82.0 (0.02)
Passed Vit filter:                       115  (0.0280351); expected 4.1 (0.001)
Passed Fwd filter:                        77  (0.0187713); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              77  [number of targets reported over threshold]
# CPU time: 1.80u 0.41s 00:00:02.21 Elapsed: 00:00:01.27
# Mc/sec: 567.45
//
Query:       MMETSP1061-20121228|182_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.23s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 644.23
//
Query:       MMETSP1061-20121228|184_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1179.90
//
Query:       MMETSP1061-20121228|185_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 243.98
//
Query:       MMETSP1061-20121228|181_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     4e-142  471.2   1.3   4.9e-142  470.9   0.9    1.0  1  TIGR00019 prfA: peptide chain release factor 1
    1.6e-70  235.7   2.2    2.1e-70  235.4   1.6    1.1  1  TIGR00020 prfB: peptide chain release factor 2
    8.5e-23   78.8   0.1    1.3e-22   78.2   0.1    1.2  1  TIGR03072 release_prfH: putative peptide chain release factor H


Domain annotation for each model (and alignments):
>> TIGR00019  prfA: peptide chain release factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  470.9   0.9  3.6e-145  4.9e-142       3     360 ..      74     432 ..      72     433 .. 0.98

  Alignments for each domain:
  == domain 1    score: 470.9 bits;  conditional E-value: 3.6e-145
  TIGR00019   3 kkslleklesleeryeeleelLsdpevisdqkklrklskeysqleeivkkyeeykklqedlkeakelle.ke.dkelrelakeeleelekkieeleeqlkvlLlPkDpndeknvileiragtGGdeaalfagdLfrmYsryaeskkWkveilsaseselgGykevileikGegvysklkfesGvhRvqRvPvtesqGRvhtsaatvavlPeveevevkinpkdlridtyrssGaGGqhvnttdsavrithlPtgivvecqdersqlknkekalkvLraklleaeeekqqeeqakeRksqvgsgdRseriRtYnfpqnRvtdhRinltlykLdevlegdldeliealiaeeqkekleelse 360
                ++ ++ +le++++ y+ l+e L dp+v +d k l+k+  ++++ ee+v +y ey +l e+l+ akel + ++ d+e+re+ak e++e+e ++  +ee++kvlLlPkDpnd++nv+leiragtGG ea +f+gdL+ +Y++y ++++W  +i+++s ++ gGyk++++e+kG++vysklk+e+GvhRvqRvP+tesqGRvhts+atva++Pe +ev+++i++kdl+i+t+rs+GaGGq+vn++++av++ h+Ptgi+++c++ r ql n+e a+k+L akl+++e+ek++ e+ ++R sqvg+g Rse+iRtYn+++ R +dhRi+ + y L+++l gd+d +i a+i+++q+ekl+el+e
  MMETSP1061-20121228|181_1  74 DEGMMGRLENIKRSYNALTERLGDPDVLADSKLLQKVMSDRASSEEVVLAYDEYDRLLEELEGAKELFQdAGdDPEMREMAKLEMKEIEPQLGPIEEKIKVLLLPKDPNDDRNVMLEIRAGTGGSEANIFVGDLYDVYRKYISTQGWSANIIDESAGDDGGYKNIVMEVKGDKVYSKLKWEAGVHRVQRVPATESQGRVHTSTATVAIMPECDEVDINIDKKDLEISTMRSGGAGGQNVNKVETAVDLLHKPTGIRIKCTQMRTQLGNRELAMKMLMAKLYDMENEKREMEERARRGSQVGTGGRSEKIRTYNWKDSRCSDHRIQQN-YPLNQFLGGDIDPIIGAMIMKDQEEKLKELAE 432
                678999*************************************************************9954479***********************************************************************************************************************************************************************************************************************************************************99.****************************9876 PP

>> TIGR00020  prfB: peptide chain release factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.4   1.6   1.5e-73   2.1e-70      26     362 ..      81     420 ..      58     423 .. 0.92

  Alignments for each domain:
  == domain 1    score: 235.4 bits;  conditional E-value: 1.5e-73
  TIGR00020  26 leklkarleklekeledpnlWndqekaqkvikeksslkekldkleelkksledlsellelakeekde.ellaeleeelkalekelkele..lktll..sgeydaknalltiqaGaGGteaqdWasmLlrmylrwaerrgykveildlseaeeaGiksvtllikgeyayGyLksekGvhrLvrisPfdanarrhtsfasvevlPevdddidieikeedvridvyrasGaGGqhvnktdsavrithiptgivvqcqnersqlknkekalkllkakLyelelekeeaekkaledekkeig.WGsqirsyvlhpyklvkdlrtevevgnveavldGdidefieaylk 362
                le++k+  + l ++l dp++  d +  qkv++++ s +e++  ++e  + le+l+   el +++ d+ e+   ++ e+k++e +l  +e  +k+ll  ++++d++n +l+i+aG+GG ea  ++  L+ +y ++   +g+ ++i+d+s ++++G k + +++kg+  y  Lk e Gvhr+ r+   ++++r hts a+v ++Pe  d++di+i+++d+ i + r+ GaGGq+vnk ++av + h ptgi ++c + r+ql n+e a+k+l akLy++e ek+e e++a ++ + + g   ++ir+y  ++ ++  d+r + ++   +  l Gdid +i a++ 
  MMETSP1061-20121228|181_1  81 LENIKRSYNALTERLGDPDVLADSKLLQKVMSDRASSEEVVLAYDEYDRLLEELEGAKELFQDAGDDpEMREMAKLEMKEIEPQLGPIEekIKVLLlpKDPNDDRNVMLEIRAGTGGSEANIFVGDLYDVYRKYISTQGWSANIIDESAGDDGGYKNIVMEVKGDKVYSKLKWEAGVHRVQRVPATESQGRVHTSTATVAIMPEC-DEVDINIDKKDLEISTMRSGGAGGQNVNKVETAVDLLHKPTGIRIKCTQMRTQLGNRELAMKMLMAKLYDMENEKREMEERARRGSQVGTGgRSEKIRTYNWKD-SRCSDHRIQQNYP-LNQFLGGDIDPIIGAMIM 420
                5889999999****************************************************99877355555678*******99765522333333489*********************************************************************************************************.889**********************************************************************************99877525789********.9******998875.5679*********99875 PP

>> TIGR03072  release_prfH: putative peptide chain release factor H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.1   9.3e-26   1.3e-22       1     181 [.     187     370 ..     187     389 .. 0.84

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 9.3e-26
  TIGR03072   1 ilLqlssaqGPaecclavakalerlkreaakrkvkvevlekeagekartlrsvlvsLeGeaaealaerweGtllwiaespyRkkhrRknWfvgverf.....saeeeaeedeirfetlrasGpGGqhvnktesavRavhlasGisvkvqseRsqhankrLaklllavkLekleeeqaaalraerrs 181
                ++L + +++G  e+  +v    +   +   +++ + +++++ ag+  + ++ ++++++G++  +   +we ++  + + p  +++ R     +   +     + + ++ ++++ + t+r+ G GGq vnk e+av   h+++Gi +k  + R q  n+ La+++l+ kL ++e+e+++ ++  rr 
  MMETSP1061-20121228|181_1 187 VMLEIRAGTGGSEANIFVGDLYDVYRKYISTQGWSANIIDESAGDD-GGYKNIVMEVKGDKVYS-KLKWEAGVHRVQRVPATESQGRVHTSTATVAImpecdEVDINIDKKDLEISTMRSGGAGGQNVNKVETAVDLLHKPTGIRIKCTQMRTQLGNRELAMKMLMAKLYDMENEKREMEERARRG 370
                5799*************************************99975.789*********99765.4589999999999999998888766555444434434556678899***********************************************************9998877665555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.24s 00:00:00.50 Elapsed: 00:00:00.42
# Mc/sec: 1373.32
//
Query:       MMETSP1061-20121228|186_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1061-20121228|188_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.27    8.2   5.9       0.31    8.0   4.1    1.1  1  TIGR01478 STEVOR: variant surface antigen, stevor family


Domain annotation for each model (and alignments):
>> TIGR01478  STEVOR: variant surface antigen, stevor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.1   7.7e-05      0.31     245     287 ..      34      79 ..      21      88 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 7.7e-05
  TIGR01478 245 vgivsgaadeaesaa..saatsiflPyGiaalvLiilvvvli.iLY 287
                 gi++++a +  +a+  +++  + +P+G+ a+ +++lv+vl+ +L 
  MMETSP1061-20121228|188_1  34 SGIAHCSAAVPCRAVvdAVVDVVSFPVGLDAVLVLVLVLVLVlVLL 79 
                4577777666655542245667789****76554444444430443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       353  (0.0860556); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 331.76
//
Query:       MMETSP1061-20121228|189_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   11.8   0.0         13    3.6   0.0    3.2  3  TIGR02603 CxxCH_TIGR02603: putative heme-binding domain


Domain annotation for each model (and alignments):
>> TIGR02603  CxxCH_TIGR02603: putative heme-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.013        54      66      91 ..     115     140 ..     107     151 .. 0.89
   2 ?    1.8   0.0     0.011        47      66      94 ..     273     301 ..     268     319 .. 0.88
   3 ?    3.6   0.0    0.0032        13      65     117 ..     350     402 ..     335     407 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.013
  TIGR02603  66 kdGrivsglvasetadavtvkllgGv 91 
                +dG+  +g ++++t++++tv   +G 
  MMETSP1061-20121228|189_1 115 EDGEWFDGEITDHTDGEYTVTWSDGD 140
                79******************999986 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.011
  TIGR02603  66 kdGrivsglvasetadavtvkllgGvekk 94 
                +dG+ ++g v++ +++++tv+  +G++++
  MMETSP1061-20121228|189_1 273 EDGAWIDGEVTEYSKNTYTVVWSEGTDEE 301
                79*******************99998775 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.0032
  TIGR02603  65 lkdGrivsglvasetadavtvkllgGvekkvkreeiksrealpvslMpeglea 117
                 +dG++  g + + +++++ ++  +G ++ +   ei ++  l++   p+g+++
  MMETSP1061-20121228|189_1 350 EEDGSVWYGHIDDYSNGEYLIEWDDGESEWIDDVEIIRMMVLNAKASPKGMKS 402
                579************************************99999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1875.85
//
Query:       MMETSP1061-20121228|191_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.21s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 493.74
//
Query:       MMETSP1061-20121228|194_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-66  221.7   1.2    1.3e-66  221.3   0.8    1.1  1  TIGR00279 L10e: ribosomal protein L10.e
      0.009   14.0   0.1      0.038   12.0   0.1    2.0  1  TIGR01164 rplP_bact: ribosomal protein L16
  ------ inclusion threshold ------
      0.032   12.0   0.0      0.059   11.1   0.0    1.4  1  TIGR00122 birA_repr_reg: biotin operon repressor


Domain annotation for each model (and alignments):
>> TIGR00279  L10e: ribosomal protein L10.e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.3   0.8   9.8e-70   1.3e-66       1     170 [.       1     173 [.       1     175 [. 0.98

  Alignments for each domain:
  == domain 1    score: 221.3 bits;  conditional E-value: 9.8e-70
  TIGR00279   1 marrparcyrdrkkkpytrkeyikavPdskvriydlGnk...saefPvsvslvakelvqirenaleaarvaankyltrvaGrsayklkirvyPhhilrenkmatgaGadriqdGmrkafGkPvgtaarvkkgqkilsvrvkdekfevakealrraamklPvptkiviekgkel 170
                m rrparcyr++k+kpy +++y ++vP+sk++i+d+G k   ++ fP + +lv++e +qi+++alea rva nk+lt++ G+++y++++r +P+h+lr nkm+++aGadr++ Gmr+++GkP+g aarv++gq++lsvr+kd++   + ea+rr ++k+ +++ki+ + ++ +
  MMETSP1061-20121228|194_1   1 MGRRPARCYRYQKNKPYIKSRYCRGVPESKIKIFDVGAKkapVDLFPFVAHLVCDEKQQISSEALEACRVAINKHLTKTIGKEGYHIRMRAHPYHVLRANKMLSCAGADRLSSGMRHSYGKPIGVAARVDIGQILLSVRAKDQNEAHVIEAIRRGKFKFAGRQKILKSAKWGF 173
                789**********************************99888999************************************************************************************************************************99988866 PP

>> TIGR01164  rplP_bact: ribosomal protein L16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   2.8e-05     0.038      33     120 ..      52     155 ..      38     161 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.8e-05
  TIGR01164  33 lkalekawitarqieaarvaltravk....rgg.klWirifpdkpv.tkkpa....etrmGkG....kGsvekwvavvkpGkvlfelag..veeevarealkla 120
                l++ ek+ i++ ++ea+rva+++++     ++g ++ +r  p   + ++k +      r+ +G     G++    a+v  G++l  +     +e  + ea+++ 
  MMETSP1061-20121228|194_1  52 LVCDEKQQISSEALEACRVAINKHLTktigKEGyHIRMRAHPYHVLrANKMLscagADRLSSGmrhsYGKPIGVAARVDIGQILLSVRAkdQNEAHVIEAIRRG 155
                678899***************99886333222225666655533221222111111234444422215788888888888888888776334444555666665 PP

>> TIGR00122  birA_repr_reg: biotin operon repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.3e-05     0.059      18      57 ..      60     100 ..      49     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.3e-05
  TIGR00122  18 klsealglSRtavnkhi.qkLreeGvdVlvvrkGYrLvpel 57 
                  seal+  R+a+nkh  ++  +eG+ + + +  Y +    
  MMETSP1061-20121228|194_1  60 ISSEALEACRVAINKHLtKTIGKEGYHIRMRAHPYHVLRAN 100
                4589************736799******9999999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 795.60
//
Query:       MMETSP1061-20121228|198_1  [L=1065]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.55
# Mc/sec: 2555.79
//
Query:       MMETSP1061-20121228|200_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-29   98.2   0.1    1.2e-28   97.8   0.1    1.1  1  TIGR02228 sigpep_I_arch: signal peptidase I
    1.4e-07   29.3   0.3      3e-07   28.3   0.2    1.5  1  TIGR02227 sigpep_I_bact: signal peptidase I
  ------ inclusion threshold ------
      0.045   10.8   0.1      0.061   10.3   0.1    1.1  1  TIGR01665 put_anti_recept: phage minor structural protein, N-terminal region


Domain annotation for each model (and alignments):
>> TIGR02228  sigpep_I_arch: signal peptidase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.1   8.7e-32   1.2e-28       9     150 ..      33     182 ..      25     186 .. 0.81

  Alignments for each domain:
  == domain 1    score: 97.8 bits;  conditional E-value: 8.7e-32
  TIGR02228   9 viliillvilllvglvskasgedpvvvvlSgSMePtfntGdlvlvegvdpedikvGdvivykseekrklviHrvieik..nsggellfiTkGdnNnapD.......lepvpsenvigkvlgitipfagyvlvvask.aigaavllilpgvll 150
                +++i+  ++++  +l+   + e pvvvvlSgSMeP f++Gd++++++  +e++ vGdv+v+k ++  ++++Hr+ +++  + +g++ + TkGdnN + D         +++ e+++gk    t+ ++g+v+   +  ++ + vl+ ++g+++
  MMETSP1061-20121228|200_1  33 LAMIVFSALMIWKALMCYTKSESPVVVVLSGSMEPAFQRGDILFLNN-SVEQVGVGDVVVFKIKDRDIPIVHRILKVHqdEPDGKVELLTKGDNNRVDDrglyapgQLWLEREDILGKAV-GTLRYVGMVTIALNDyPVLKYVLVGMMGLFV 182
                4455555566667788888888************************9.9***************************99667789***************9999998789*********99.5666677777665551455555555555554 PP

>> TIGR02227  sigpep_I_bact: signal peptidase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.2   2.2e-10     3e-07      22      80 ..      53     111 ..      31     125 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 2.2e-10
  TIGR02227  22 l....vkvpgesMeptlkegdlilvnklaygtaepkrgDivvfkapeeekkeyikRviglpGD 80 
                     v+v ++sMep+++ gd +++n     ++++  gD+vvfk + +++  ++ R++ +  D
  MMETSP1061-20121228|200_1  53 SespvVVVLSGSMEPAFQRGDILFLNNS---VEQVGVGDVVVFKIK-DRDIPIVHRILKVHQD 111
                123348999*****************95...689*********996.58889****9877666 PP

>> TIGR01665  put_anti_recept: phage minor structural protein, N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   4.5e-05     0.061     273     310 ..      80     117 ..      73     121 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4.5e-05
  TIGR01665 273 klekieiGdtVrvkhkdfniklkaRvikveeslvtpkq 310
                + e++++Gd+V  k kd++i+++ R+ kv  +  ++k+
  MMETSP1061-20121228|200_1  80 SVEQVGVGDVVVFKIKDRDIPIVHRILKVHQDEPDGKV 117
                5689*************************999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.25s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 577.07
//
Query:       MMETSP1061-20121228|201_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    6.8   6.6        3.5    5.5   4.5    1.7  1  TIGR04081 selen_ocin: radical SAM modification target peptide, selenobiotic family


Domain annotation for each model (and alignments):
>> TIGR04081  selen_ocin: radical SAM modification target peptide, selenobiotic family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   4.5   0.00084       3.5      15      35 ..       6      25 ..       5      34 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00084
  TIGR04081 15 iAaLvaGagLaaPgpAlGaSG 35
               +A+LvaGa + aP++  ++S 
  MMETSP1061-20121228|201_1  6 LASLVAGAAAFAPAQQ-AQST 25
               8************986.5664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.22s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 871.13
//
Query:       MMETSP1061-20121228|203_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 626.18
//
Query:       MMETSP1061-20121228|206_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.24s 00:00:00.55 Elapsed: 00:00:00.48
# Mc/sec: 992.67
//
Query:       MMETSP1061-20121228|204_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-71  236.2   0.2    1.8e-70  235.1   0.1    1.5  1  TIGR03672 rpl4p_arch: 50S ribosomal protein L4P
    9.4e-08   29.4   2.5      0.017   12.3   3.2    2.7  2  TIGR03953 rplD_bact: 50S ribosomal protein L4


Domain annotation for each model (and alignments):
>> TIGR03672  rpl4p_arch: 50S ribosomal protein L4P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.1   0.1   8.9e-74   1.8e-70       3     249 ..       7     259 ..       6     261 .. 0.97

  Alignments for each domain:
  == domain 1    score: 235.1 bits;  conditional E-value: 8.9e-74
  TIGR03672   3 vkvydlegeeveeielPevFeeevRkDlikravlaaqtarlqpkGadplaGkrtsaeslgsgrGvarvprlkess.....raarvpqavgGrkahpPkvekklvekiNkkEkklairsAiaatakkelvkaRgHvfeee.elpivveddleklkktkevkelleklglyddverakegkkiraGkgklRgRkYkepksvLivvsddeellkaarnlpGvdvvtvkelnvelLAPGtkpgRLtvftesaiekle 249
                v+v++l+g++ +e +lP+v + ++R+D+++ +      +++q +     aGk+ sa+s+g+gr var+pr+ +++     ++a+ ++ +gGr   p k+ +k+++k+N   k++a++sA+aa+a + lv aRgHv++++ e+p+v++ ++e+ kkt+ +k++l+++g  +dve+a ++kkiraGkgk+R+R+Y+ ++++L++ ++++++  a+rnlpGv+++ v++ln+ +LAPG++ gR  v+++ a++kl+
  MMETSP1061-20121228|204_1   7 VSVFSLSGDKSGETTLPAVMTAPLRPDIVQFVHTNVNKNKRQAYAVAIRAGKQVSASSWGTGRAVARIPRVGGGGtsrsgQGAFGNMCRGGRMFAPTKTWRKWHKKVNIGQKRYAVASALAASAVPALVMARGHVVDDVpEVPLVLDTSVESTKKTSAAKDILSAVGALADVEKAGDSKKIRAGKGKMRNRRYTMRRGPLVIYAQNDGIELAFRNLPGVELCCVDRLNILQLAPGGHMGRFCVWSQAALDKLD 259
                689*******************************************************************87665555559999**********************************************************************************************************************************************************************997 PP

>> TIGR03953  rplD_bact: 50S ribosomal protein L4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   3.2   8.3e-06     0.017      50     102 ..      76     130 ..      23     178 .. 0.82
   2 !   12.2   0.0   8.7e-06     0.018     134     171 ..     203     239 ..     171     259 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.3e-06
  TIGR03953  50 rQKgtGrARqGsirsplfrgGGvvfGpkpr..dysqklnkKvrrlAlrsaLsekl 102
                r  g G  R+G+     +  GG++f+p++   ++++k+n  ++r A++saL++ +
  MMETSP1061-20121228|204_1  76 RVGGGGTSRSGQGAFGNMCRGGRMFAPTKTwrKWHKKVNIGQKRYAVASALAASA 130
                55699**********************997669******************9765 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 8.7e-06
  TIGR03953 134 kkvLivvdekdenlelsarNlpkvkvleveglnvydll 171
                +  L++ + +++ +el++rNlp+v+++ v++ln+++l 
  MMETSP1061-20121228|204_1 203 RGPLVIYA-QNDGIELAFRNLPGVELCCVDRLNILQLA 239
                44566665.899**********************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.24s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1005.76
//
Query:       MMETSP1061-20121228|205_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1065.69
//
Query:       MMETSP1061-20121228|210_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.22s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 400.68
//
Query:       MMETSP1061-20121228|208_1  [L=722]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00046   17.3   0.0      0.001   16.1   0.0    1.5  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.5e-07     0.001     213     272 ..      95     151 ..      83     164 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.5e-07
  TIGR01628 213 deknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakf 272
                +e++ ++g a ++ye++e+A++Ave ln+ k++   +++il V+++ + ++ +++ +++f
  MMETSP1061-20121228|208_1  95 EESGATEGVAICEYETPEEAQNAVEVLNNYKFD---KNHILVVTPYTRAKKLQDLEEKEF 151
                678889999************************...889999998865555555444445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (722 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.26s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 2216.19
//
Query:       MMETSP1061-20121228|213_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.25s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 449.59
//
Query:       MMETSP1061-20121228|212_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-62  207.6   1.0      3e-62  207.4   0.7    1.0  1  TIGR00038 efp: translation elongation factor P
    4.3e-30  103.1   0.3      5e-30  102.9   0.2    1.0  1  TIGR02178 yeiP: elongation factor P-like protein YeiP
    1.4e-05   22.8   0.0      2e-05   22.3   0.0    1.2  1  TIGR00037 eIF_5A: translation initiation factor eIF-5A


Domain annotation for each model (and alignments):
>> TIGR00038  efp: translation elongation factor P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.4   0.7   2.2e-65     3e-62       1     184 []      27     210 ..      27     210 .. 0.99

  Alignments for each domain:
  == domain 1    score: 207.4 bits;  conditional E-value: 2.2e-65
  TIGR00038   1 isandlrkGlvieldgelyvvlefehvkpGkgqafvrvklknlktgkvlektfksgekvekaeveekemqylYkdgdsyvfmdketyeqievekealgdaakfLkenmevevvlyegepisvelpnkvelevtetepgvkgdtassstKpatletGaevqVPlFieegekikvdtrtgeYveRa 184
                i+++d+++G++ieldge+++vl f+++k+++g+a +++k+knl +g+++e+t++sgek+e+a +e++++qy Y+dg+ + fm++et+e++ v+ +++gd +++L+e+m+v++v+++g++i+v +p++ ++e++etep++kg+ta++ tKpa+l+ Ga+v++P ++e+ge+ikvdt ++e++eRa
  MMETSP1061-20121228|212_1  27 IDTSDIKNGMTIELDGEPWKVLGFSIMKQARGAAKTTIKFKNLIKGNTIENTYRSGEKFETALIEKSDHQYTYQDGEIFFFMNSETFEEVPVQLKTVGDVEDWLEEGMDVSLVFFKGNVIEVVVPSTGVYEIVETEPTMKGNTAQGYTKPAVLSCGATVTIPGYLEQGEMIKVDTGKREFLERA 210
                5799**********************************************************************************************************************************************************************************97 PP

>> TIGR02178  yeiP: elongation factor P-like protein YeiP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.9   0.2   3.7e-33     5e-30       3     186 .]      30     210 ..      28     210 .. 0.97

  Alignments for each domain:
  == domain 1    score: 102.9 bits;  conditional E-value: 3.7e-33
  TIGR02178   3 selkkGlvveyngktllikdievssPqgrGgaklyklrlsdvrtGakveerfkaddvldtvellrrevsfsyvdGeeyvfldeedytlytlkkdeiedellfiseglsgmsvllvdgeavalelPqsveleivetaPeikGasaskrtkPaklstGlvvqvPeyiatGerilinteerkfmgra 186
                s++k G+ +e +g+ +++    +   q+rG+ak   ++++++  G  +e+ +++ +  +t  + + + +++y dGe + f++ e +    ++ + ++d   ++ eg+ ++s++ + g+++ + +P++ + eivet+P +kG +a   tkPa ls G  v +P y+  Ge i+++t +r+f +ra
  MMETSP1061-20121228|212_1  30 SDIKNGMTIELDGEPWKVLGFSIM-KQARGAAKT-TIKFKNLIKGNTIENTYRSGEKFETALIEKSDHQYTYQDGEIFFFMNSETFEEVPVQLKTVGDVEDWLEEGM-DVSLVFFKGNVIEVVVPSTGVYEIVETEPTMKGNTAQGYTKPAVLSCGATVTIPGYLEQGEMIKVDTGKREFLERA 210
                89******************9987.599**9986.7999*******************************************************************9.6889999******************************************************************998 PP

>> TIGR00037  eIF_5A: translation initiation factor eIF-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.5e-08     2e-05       7     118 ..      27     139 ..      22     152 .. 0.91

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.5e-08
  TIGR00037   7 vevkaLrkggyvvidgepckivdisvskpGkhGaakarvvaigifdkkkrefvsPvtskvevPivdrkeaqvlaidggvvqlmdleteetlevkiPe..elkdsleegveveyi 118
                ++ + +++g  + +dgep k++  s+ k    Gaak+ ++  ++ +++  e    + +k e  +++++  q    dg++  +m+ et e+  v++    +++d leeg++v ++
  MMETSP1061-20121228|212_1  27 IDTSDIKNGMTIELDGEPWKVLGFSIMKQA-RGAAKTTIKFKNLIKGNTIENTYRSGEKFETALIEKSDHQYTYQDGEIFFFMNSETFEEVPVQLKTvgDVEDWLEEGMDVSLV 139
                6778899999999***************97.5********************************************************99887776555999******999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 994.63
//
Query:       MMETSP1061-20121228|215_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.21s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 550.58
//
Query:       MMETSP1061-20121228|217_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1279.72
//
Query:       MMETSP1061-20121228|214_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.21s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1160.59
//
Query:       MMETSP1061-20121228|224_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 534.56
//
Query:       MMETSP1061-20121228|225_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.23s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 995.27
//
Query:       MMETSP1061-20121228|222_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-21   74.0   0.6      2e-21   73.8   0.4    1.0  1  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.4   4.8e-25     2e-21     413     533 ..       2     121 ..       1     135 [. 0.85

  Alignments for each domain:
  == domain 1    score: 73.8 bits;  conditional E-value: 4.8e-25
  TIGR00811 413 wflgmihkkvagfqldevyvgtaeeraagekpdhsvhagreftlgtnvlsdrknweealanls..vketfsvrrerilknikelkelleeassdeekaafeaalalevkaldklneeeeeead 533
                wfl   ++kv gfq devyvgt eeraa  + d    a  ++ + tnv +++   +    +    v++ f+ +re+++ ni e++  ++ ass+eeka fe al+le+  l+ +n++++e   
  MMETSP1061-20121228|222_1   2 WFLAWCQRKVMGFQYDEVYVGTPEERAAKGHAD---AAQTNIDIATNVPTHAVGTQRITREYMdlVEQNFTNQREKVMANIAEIRIQINAASSAEEKAVFEDALKLELDILKSVNAKQSESMR 121
                ***************************976665...5788999*****999976666555544467889***********************************************9998432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|227_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-10   36.6  14.0    0.00039   16.2   0.1    4.8  6  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.4e-07   27.9   4.4      0.041   11.5   0.1    4.8  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   1.9e-07   0.00039     224     280 ..      17      73 ..      15      85 .. 0.89
   2 !    7.9   0.0   6.1e-05      0.13     468     516 ..      91     139 ..      87     179 .. 0.72
   3 ?   -0.8   0.0     0.026        53     275     324 ..     215     264 ..     192     297 .. 0.63
   4 !   14.4   0.0   6.9e-07    0.0014     173     240 ..     443     510 ..     432     535 .. 0.82
   5 ?   -3.6   0.0      0.18   3.7e+02     775     800 ..     545     570 ..     542     573 .. 0.83
   6 !    2.6   0.0    0.0025       5.1     237     301 ..     703     765 ..     698     775 .. 0.60

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.9e-07
  TIGR02917 224 pnaiaallalatilleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedA 280
                p+++++l+ +++   e++++ +A k ada+lkk pn+ ++  +k+lv    +k e+A
  MMETSP1061-20121228|227_1  17 PKKENDLFKNVVKHYEQKQYKKAIKSADAILKKYPNHGETLCMKGLVLNNMGKKEEA 73 
                7899999999999*********************************98877777777 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 6.1e-05
  TIGR02917 468 ynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqeknid 516
                ++  g  + g +++++A +a+++AL i+ d+++ l  L  l++q  ++d
  MMETSP1061-20121228|227_1  91 WHVFGLLHRGDRNYNEAIKAYKMALRIDNDNLQILRDLSLLQIQMRDLD 139
                5666666677777777777777777777777777766666666666555 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.026
  TIGR02917 275 kkfedAretlqaalksapeylpallla.GaseyqlgeleqAeqylnqilka 324
                +++++A+++l++  k   +   +ll+a  + +y+lg++   ++ + +i ++
  MMETSP1061-20121228|227_1 215 GNYQEALDNLTECEKVVMDRT-SLLVArAIYQYKLGQYADVKKTIMDIFDR 264
                578888888877777777755.45555155578888887777777776665 PP

  == domain 4    score: 14.4 bits;  conditional E-value: 6.9e-07
  TIGR02917 173 nkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatillee 240
                 ++ e+ al+d+ L+ +p +vdA+ Lk+ ll + g+ + A+++++  + l+ ++           le+
  MMETSP1061-20121228|227_1 443 AEYTEGVALLDRCLEHTPTAVDAYELKARLLKAAGDVKTAVEVIDAGRDLDRQDRYINNLTTEYMLEA 510
                5788999************************************9998888877765555555555555 PP

  == domain 5    score: -3.6 bits;  conditional E-value: 0.18
  TIGR02917 775 alAelylaekdedkAakhYqtvvkka 800
                 lA  + ++ ++ kA k+Y  vvk  
  MMETSP1061-20121228|227_1 545 GLAACFAKKDEWGKALKKYSAVVKHF 570
                58889999999999999999999975 PP

  == domain 6    score: 2.6 bits;  conditional E-value: 0.0025
  TIGR02917 237 lleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedAretlqaalksapeylpallla 301
                ll++  +eeA+k+   l+k  p+   +  l+  v+ ++kk   A+++l+++ + + +   a ++ 
  MMETSP1061-20121228|227_1 703 LLKADALEEAKKYSSILSKHCPQRIGTWSLQYDVAIRRKKVLLALQALNRMKQLDSN--GADYVS 765
                566666666666666666666666666666666666666666666666655555554..334444 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.017        35      63     108 ..      31      76 ..      27      86 .. 0.88
   2 !   10.5   0.0   3.9e-05     0.081      31      85 ..      67     121 ..      55     125 .. 0.89
   3 ?    2.3   0.0     0.013        27      66     109 ..     215     258 ..     211     271 .. 0.90
   4 ?   -1.7   0.0      0.23   4.6e+02      52      81 ..     443     472 ..     437     504 .. 0.77
   5 !   11.5   0.1     2e-05     0.041      47      79 ..     535     567 ..     533     586 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.017
  TIGR02552  63 qalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlka 108
                 ++k+y++Ai+  +++++ ++++ + +   + +l ++g+keeA   
  MMETSP1061-20121228|227_1  31 YEQKQYKKAIKSADAILKKYPNHGETLCMKGLVLNNMGKKEEAHGL 76 
                57899************************************99765 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 3.9e-05
  TIGR02552  31 qgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldldd 85 
                 gk eeA+ l +l  + d+ ++  w   ++ +    +y+eAi+aY++a+ +d d+
  MMETSP1061-20121228|227_1  67 MGKKEEAHGLVKLGLMHDMRSHVCWHVFGLLHRGDRNYNEAIKAYKMALRIDNDN 121
                5777888888888899999999999999***********************9987 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.013
  TIGR02552  66 keyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaL 109
                ++y+eA+++ + + ++ +d  + ++++a+  ++lg++++ +k++
  MMETSP1061-20121228|227_1 215 GNYQEALDNLTECEKVVMDRTSLLVARAIYQYKLGQYADVKKTI 258
                69*********************************999888776 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.23
  TIGR02552  52 akywlgLaaclqalkeyeeAiaaYalaaal 81 
                a+y+ g a+    l++  +A++aY+l a l
  MMETSP1061-20121228|227_1 443 AEYTEGVALLDRCLEHTPTAVDAYELKARL 472
                677778888888888888888888876655 PP

  == domain 5    score: 11.5 bits;  conditional E-value: 2e-05
  TIGR02552  47 ldpteakywlgLaaclqalkeyeeAiaaYalaa 79 
                ++++ + y lgLaac+ +++e+ +A++ Y++ +
  MMETSP1061-20121228|227_1 535 YEMQCSWYELGLAACFAKKDEWGKALKKYSAVV 567
                66777889*********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.27s 00:00:00.78 Elapsed: 00:00:00.47
# Mc/sec: 2490.94
//
Query:       MMETSP1061-20121228|226_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 992.19
//
Query:       MMETSP1061-20121228|230_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.0   0.5      0.035   10.6   0.3    1.1  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   8.5e-06     0.035     315     442 ..       9     131 ..       4     150 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.5e-06
  TIGR00860 315 vfvflalleyalVnyvvhkksakkkrklllerlarllkkkeegeekrrpaleakelsslelrakkgg.edleskteeeallksvppseasldlakileevriakrlrkkdeseevakeklkrakviDkl 442
                +fv +al+  a+V+ ++  +  +++r l+l+ ++r ++  +++++    +++    +++ +  +++  e+ ++++eee+l k+++ +    + + +++   +a +++ k+++++    k +r   i k 
  MMETSP1061-20121228|230_1   9 LFVLAALVASAVVVMTAEVNAFRENRILFLNTQQRSQTTLKDSNADILMSMRGGAATAIDVDIESSDeEESDEEEEEETLAKATKKA----AAKTVKKT--VAAAMKPKKKKKKSSLMKFFRIPYIIKA 131
                6999*********99999988888888888777776666555554443444444445555554444312222222222222222222....22233332..3344444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       498  (0.121404); expected 82.0 (0.02)
Passed bias filter:                      264  (0.0643588); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.21s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 591.08
//
Query:       MMETSP1061-20121228|231_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1015.92
//
Query:       MMETSP1061-20121228|232_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1223.90
//
Query:       MMETSP1061-20121228|237_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          3    5.3  32.4      0.025   12.1   2.7    3.1  3  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.7   6.2e-06     0.025      50      77 ..       4      31 ..       1      32 [. 0.92
   2 ?    5.2   6.3   0.00079       3.2      50      74 ..      28      52 ..      24      63 .. 0.59
   3 ?    0.4   5.5     0.022        89      38      79 ..      60     101 ..      51     115 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.2e-06
  TIGR03789 50 GallGavVgGPvGaiiggitGgligqav 77
               G l+G+ VgG vG ++g+ +G l+g+ v
  MMETSP1061-20121228|237_1  4 GYLVGSFVGGSVGNFVGSSVGYLVGSRV 31
               899**********************976 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.00079
  TIGR03789 50 GallGavVgGPvGaiiggitGglig 74
               G  +G++VgG vG ++gg +Gg+ g
  MMETSP1061-20121228|237_1 28 GSRVGGLVGGLVGNFVGGKVGGFEG 52
               4445666666666666666666555 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.022
  TIGR03789  38 eadqealiGlgsGallGavVgGPvGaiiggitGgligqavan 79 
                 ++  + +G + G  lG+v g PvG++ g  +G ++g+ v  
  MMETSP1061-20121228|237_1  60 VNTVGDSVGGSDGNPLGGVEGKPVGGLDGYGVGEIVGSPVGF 101
                567778999999***************999999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 707.46
//
Query:       MMETSP1061-20121228|239_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 666.23
//
Query:       MMETSP1061-20121228|242_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.17s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 275.46
//
Query:       MMETSP1061-20121228|240_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.8e-182  602.6   0.3   7.8e-182  602.4   0.2    1.0  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
    1.8e-57  192.7   0.2    2.9e-57  192.0   0.1    1.2  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases
    1.4e-41  140.6   0.3      2e-41  140.1   0.2    1.1  1  TIGR03246 arg_catab_astC: succinylornithine transaminase family
    2.2e-41  139.7   0.8    1.5e-40  136.9   0.5    2.0  1  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
    3.8e-38  129.1   0.0    5.6e-38  128.5   0.0    1.1  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
    1.4e-37  127.1   0.0    2.4e-37  126.4   0.0    1.3  1  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
    1.9e-37  126.7   0.4    1.5e-36  123.7   0.3    1.9  1  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
    1.9e-36  123.7   0.2    2.6e-36  123.3   0.2    1.1  1  TIGR03372 putres_am_tran: putrescine aminotransferase
    3.4e-27   92.9   0.0    2.5e-26   90.1   0.0    1.9  1  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
    1.1e-16   58.2   0.0    2.7e-16   56.9   0.0    1.6  2  TIGR03251 LAT_fam: L-lysine 6-transaminase
    3.4e-09   33.8   0.0    2.5e-08   30.9   0.0    1.9  2  TIGR00699 GABAtrns_euk: 4-aminobutyrate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  602.4   0.2  2.1e-184  7.8e-182       1     422 [.      46     467 ..      46     468 .] 1.00

  Alignments for each domain:
  == domain 1    score: 602.4 bits;  conditional E-value: 2.1e-184
  TIGR00713   1 kseklfeeakqvlpGGvnsPvRafkavkgtPlfvekakgallldvdgneyiDyvlsyGplilGhahekvveavkealerGlsyGapteaeielakeiiervksvekvRlvnsGteatmsavRlaRgftgrdkiikfeGcyhGhaDalLvkagsgaatlglpsslgvpeeaakltlvlpyndlealeevleelgeeiagvivepvagnmgvvlpkkeflealrelteengallilDevvtGFRvalegaqelygvepDlvvlGkilggGlPvgalggrreimerlaPeGkvyqaGtlsgnplavaaGlatlkaleeeevykeleelaeklaegleevleekgievevvrvgsmlslffteeevtnfaeakksdtelfakffkellekGvylapsqfealFvsaaheeealektiealeevlke 422
                kse++f+ea +++pGGv+sPvRafk+v+g+P++  + kga+ +dvd+n+yiDyv+++Gp ilGha++ v+eav++++++G+s+Gap + e elak++i  v+sve+vR++nsGtea m  +Rl R+ tgr+k+ikfeGcyhGhaDa+Lv+agsg+atlglp+s+gvp++a+k t  + yn+++++++++ee+++eia+vi+epv+gn g ++p++eflea+rel++eng+ll++Dev+tGFRv+++gaqe++gv+pD++++Gk++ggGlPvga+ggr++im+++aP+G++yqaGtlsgnpla++aG++t+k+l++ +vy+ele++++kl++g+ e+ +++g +++   +g m++ +ftee+v+nfaea ksd e+f k+++++le+Gvylaps +ea F+s++h++e++ekti+ +eevl++
  MMETSP1061-20121228|240_1  46 KSEEIFAEALDLMPGGVSSPVRAFKSVGGNPVVFDRVKGAYAWDVDENKYIDYVGTWGPAILGHADDDVLEAVSKTMAKGTSFGAPCPLENELAKAVIAAVPSVEMVRFTNSGTEACMGMIRLVRAHTGREKVIKFEGCYHGHADAFLVQAGSGVATLGLPDSPGVPSAATKATFCAEYNNIDSVKAIFEENKDEIAAVILEPVVGNSGFIKPSQEFLEAIRELCNENGSLLVFDEVMTGFRVSYGGAQEYFGVTPDVTTMGKVIGGGLPVGAYGGRKDIMQQVAPAGPMYQAGTLSGNPLAMTAGIETMKKLSQPGVYDELERKSKKLVDGIMEAGKKHGHAIQGDFAGGMFGWYFTEEKVKNFAEAAKSDGEKFGKWHRMMLERGVYLAPSMYEAGFMSMSHTDEDIEKTIAIAEEVLSQ 467
                7899******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************9987 PP

>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.0   0.1   7.7e-60   2.9e-57       6     345 ..      72     418 ..      68     420 .. 0.88

  Alignments for each domain:
  == domain 1    score: 192.0 bits;  conditional E-value: 7.7e-60
  TIGR00707   6 yarlelaivrgkgakvyDveGkeYlDlvaGiavnalGHahpklvealkeqleklvhvsnlyateeqlelaeklvels.aadrvffcnsGaeanEaAlklarkaarkkgkekkkivafknsFHGRtlgalsatgkpkykkdF..eplvp....gvky.veyndiealkeaidde...taavivEpiqGEgGvvpadkeflkalrelceekdvllivDEvqtGlGRtGklfayehygvePDiltlakalggGvPigavlakeevaealtvG...dHgstfGGnplacaaalavleviekeellekvkekgeilkkkleellkkkiikevrG..kGLllGieleaeslkeivkkleekG 345
                 +  ++++ r kga+ +Dv+  +Y+D+v+  + ++lGHa +++ ea+++ + k +  +     + + ela+ +++++  ++ v f+nsG+ea  + ++l+r +++     ++k++ f+  +HG   + l  +g      +   +p vp    + ++ +eyn+i+++k++ +++   +aavi+Ep+ G++G +++++efl+a+relc+e++ ll++DEv tG+ R     a+e++gv+PD+ t++k +ggG+P+ga   ++++ +++ +      + t  Gnpla++a+  +++ ++++ + ++ ++k++ l++ + e  kk+  + ++G   G + G  +++e++k+  ++++  G
  MMETSP1061-20121228|240_1  72 VGGNPVVFDRVKGAYAWDVDENKYIDYVGTWGPAILGHADDDVLEAVSKTMAKGTSFGA--PCPLENELAKAVIAAVpSVEMVRFTNSGTEACMGMIRLVRAHTG-----REKVIKFEGCYHGHADAFLVQAGSGVATLGLpdSPGVPsaatKATFcAEYNNIDSVKAIFEENkdeIAAVILEPVVGNSGFIKPSQEFLEAIRELCNENGSLLVFDEVMTGF-RVSYGGAQEYFGVTPDVTTMGKVIGGGLPVGAYGGRKDIMQQVAPAgpmYQAGTLSGNPLAMTAGIETMKKLSQPGVYDELERKSKKLVDGIMEAGKKHG-HAIQGdfAGGMFGWYFTEEKVKNFAEAAKSDG 418
                5667999*******************************************999765554..567888999998877626789***********************.....9*************99988877766655544114444411113445379********988776677**********************************************.***************************************99998642335799*****************************************999998.799995569**********9888888887666 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   0.2   5.5e-44     2e-41      18     354 ..      76     414 ..      70     421 .. 0.81

  Alignments for each domain:
  == domain 1    score: 140.1 bits;  conditional E-value: 5.5e-44
  TIGR03246  18 kfipvrgeGsrvwdqegkeyidfaGGiavnalGhahpelvealkeqaeklwhlgngytnepvlrlakklvdat.fadkvffcnsGaeaneaalklarkvaldkygaekseivafknsfhGrt.lftvsvG.Gqakys.edfaplpegikh....aayndlealkalis...dktcavivepiqGegGvvpadkaflkglrelcdrhnallifdevqtGvGrtGelyaymeyGvtpdiltsakalGgGfpiGalltteelakvlkvG...thGttyGGnplacavaekvldlvntaelleGvkqrhelfvdelekinarykvfseirGkGlliGavlteeyaGkakdlvnaa 354
                +++ +r +G+  wd ++++yid+ G    + lGha  ++ ea+++   k    g     e+  +lak ++ a    + v f+nsG+ea    ++l r  +       +++++ f+ ++hG +  f v +G G a     d   +p+  ++    a+yn+++++ka  +   d+  avi+ep+ G++G + ++++fl+++relc++ ++ll+fdev tG  r+ +  a   +Gvtpd+ t  k +GgG+p+Ga   ++++ ++++         t  Gnpla +   + ++ ++++ + + ++++++++vd + + ++++    +    G ++G  +tee   k k++ +aa
  MMETSP1061-20121228|240_1  76 PVVFDRVKGAYAWDVDENKYIDYVGTWGPAILGHADDDVLEAVSKTMAKGTSFGAPCPLEN--ELAKAVIAAVpSVEMVRFTNSGTEACMGMIRLVRAHT------GREKVIKFEGCYHGHAdAFLVQAGsGVATLGlPDSPGVPSAATKatfcAEYNNIDSVKAIFEenkDEIAAVILEPVVGNSGFIKPSQEFLEAIRELCNENGSLLVFDEVMTGF-RVSYGGAQEYFGVTPDVTTMGKVIGGGLPVGAYGGRKDIMQQVAPAgpmYQAGTLSGNPLAMTAGIETMKKLSQPGVYDELERKSKKLVDGIMEAGKKHGHAIQGDFAGGMFGWYFTEE---KVKNFAEAA 414
                678899**************************************99999888887777776..578888876526799**********999999999654......45689*********8647999998344444312333344433331112689*******98862225689*******************************************7.88888899999************************99999988754232467899*************************************999999875433333455555555543...455555555 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.9   0.5   4.1e-43   1.5e-40      15     337 ..      75     382 ..      67     398 .. 0.83

  Alignments for each domain:
  == domain 1    score: 136.9 bits;  conditional E-value: 4.1e-43
  TIGR00700  15 lrvlaakaegaelkdvdGnrlidlaagiavlnvGhshPkvveavkrqveelthtafqvvpyesyvelaeklnaiaPgsgekkavllnsGaeavenavkiarkytgrpgvvafsrgfhGrtnltmaltakvkPykiGfGPfapevyraPlpydyrdialdkqeslddelaaiealfvadveaeqvaavvlePvqGeGGfivpakelvaavaslckehgivliadevqtGfartGklfaieheddkPdlitvaksladGlPlsgvvGraeildapapGg...lGGtyaGnPlavaaalavldiieeeglieraeqigklvkdklielk 337
                ++v+  + +ga   dvd n++id+ ++ +   +Gh + +v+eav + +++ t   f   p +   ela+ + a  P+ +     + nsG+ea    +++ r++tgr+ v+ f++++hG +   +  ++ +    +G+ P +p v  a    ++          ++ ++++++a+f    + +++aav+lePv G+ Gfi p++e+++a+++lc+e+g +l+ dev tGf r     a e+++++Pd+ t+ k + +GlP+ +  Gr +i++  ap g     Gt +GnPla++a   +++ + + g+ +  e+  k + d ++e+ 
  MMETSP1061-20121228|240_1  75 NPVVFDRVKGAYAWDVDENKYIDYVGTWGPAILGHADDDVLEAVSKTMAKGTS--FG-APCPLENELAKAVIAAVPSVEMV--RFTNSGTEACMGMIRLVRAHTGREKVIKFEGCYHGHADAFLVQAG-SGVATLGL-PDSPGVPSAATKATF----C---AEYN-NIDSVKAIFEE--NKDEIAAVILEPVVGNSGFIKPSQEFLEAIRELCNENGSLLVFDEVMTGF-RVSYGGAQEYFGVTPDVTTMGKVIGGGLPVGAYGGRKDIMQQVAPAGpmyQAGTLSGNPLAMTAGIETMKKLSQPGVYDELERKSKKLVDGIMEAG 382
                677788999*************************************9998654..44.46666679999988888876655..599*********************************987665443.33345555.455554333322222....1...2233.57788999876..5789**********************************************.777888**********************************988876633358**********************9999888888888878777764 PP

>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.0   1.5e-40   5.6e-38      20     336 ..      76     391 ..      67     414 .. 0.83

  Alignments for each domain:
  == domain 1    score: 128.5 bits;  conditional E-value: 1.5e-40
  TIGR01885  20 pvvlskaeGakvwdvegkryldflsaysavnqGhchpkivkalveqaqkltl.ssrafyndvfgefaeyvtklfGydkvlpmntGaeavetaiklarkWgykkkkipedkalilsaegnfhGrtlavislstdpesrenfGpyvpnvkkieynnlealeealeeagekvaaflvePiqGeaGvvvpddgylkkvrelckkynvlliadeiqtGiartGkllaveheevkPdivllGkalsgGvyPvsavladkevmltikpg...ehGstygGnPlasavavaalevlkeeklaeraeklGeelreelkklkkeivkevrG 336
                pvv+++ +Ga+ wdv++++y+d++ ++     Gh+  ++++a+ +   k t   +    ++ ++  + +++ +   ++v  +n+G+ea    i+l+r  + ++k i  +       +++f  ++ + +++   p+s     + ++ +   eynn+++++ ++ee+++++aa+++eP+ G++G + p++++l+ +relc+++  ll+ de+ tG  r     a e+ +v Pd+ ++Gk ++gG +Pv a  ++k++m+ + p        t +GnPla +  +++++ l++  + ++ e+  ++l + + +  k++ + ++G
  MMETSP1061-20121228|240_1  76 PVVFDRVKGAYAWDVDENKYIDYVGTWGPAILGHADDDVLEAVSKTMAKGTSfGAPCPLENELA--KAVIAAVPSVEMVRFTNSGTEACMGMIRLVRAHTGREKVIKFE-GCYHGHADAFLVQAGSGVATLGLPDSPGVPSAATKATFCAEYNNIDSVKAIFEENKDEIAAVILEPVVGNSGFIKPSQEFLEAIRELCNENGSLLVFDEVMTGF-RVSYGGAQEYFGVTPDVTTMGKVIGGG-LPVGAYGGRKDIMQQVAPAgpmYQAGTLSGNPLAMTAGIETMKKLSQPGVYDELERKSKKLVDGIMEAGKKHGHAIQG 391
                9*****************************************9987766553033333333333..3467778899*********************998887765443.3344555555555555555555566655555566666889***************************************************************7.7778889****************9888.6***************9862225789**********************999999999999999988887766665555 PP

>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0   6.3e-40   2.4e-37      12     417 ..      74     464 ..      64     466 .. 0.81

  Alignments for each domain:
  == domain 1    score: 126.4 bits;  conditional E-value: 6.3e-40
  TIGR00508  12 epplavekaegvyltdedgkeliDgisSwwvavhGhnhpelneaikeqleklehvifaglthepaieLaekLveilpeglekvffsdsGsvavEvalKmalqywqnkgekekkkflalengYHGdTlgamsvgdvelfhelfeellfeqvkvpapevalekkeeekeeevleeleklleehaeeiaalivEPlvqgagGmrvyspeyLkklrelcdeydvlliaDEiatGfgrtGklFacehagvtPDilclsKaltgGylplaatltteeiyeaflsdeeekaflHghtytgnplacavAlaslelleeeeilekvkeieaqlkeelee.lkelpkvkdvRvlGaigavelkee.kel........eerigekiqkkalekgvllRPlgnviylmppyiiteeeleklveaikea 417
                 +p++ ++ +g+y +d d++++iD +  w  a+ Gh+++ + ea+++ +   ++ +  g       eLa+ +++ +p ++e v f++sG  a    + m   + ++   + ++k++++e+ YHG    a  v + ++  +l    l+++  vp+ +++   ++   e + ++++++++ee+++eiaa+i+EP+v g +G    s+e+L+++relc+e++ ll++DE++tGf r     a e+ gvtPD+ +++K + gG lp+ a   +++i++ +      + ++ + t +gnpla ++++++++ l++  + +++++++++l +++ e  k++ +  +    G +++  ++ee + +        + +   k ++++le+gv+l P      +m     t+e++ek +++ +e+
  MMETSP1061-20121228|240_1  74 GNPVVFDRVKGAYAWDVDENKYIDYVGTWGPAILGHADDDVLEAVSKTM---AKGTSFGAPCPLENELAKAVIAAVP-SVEMVRFTNSGTEAC---MGMIRLVRAH---TGREKVIKFEGCYHGHA-DAFLVQAGSGVATL---GLPDSPGVPSAATK---ATFCAEYNNIDSVKAIFEENKDEIAAVILEPVV-GNSGFIKPSQEFLEAIRELCNENGSLLVFDEVMTGF-RVSYGGAQEYFGVTPDVTTMGKVIGGG-LPVGAYGGRKDIMQQVAPA---GPMYQAGTLSGNPLAMTAGIETMKKLSQPGVYDELERKSKKLVDGIMEaGKKHGHAIQGDFAGGMFGWYFTEEkV-KnfaeaaksDGEKFGKWHRMMLERGVYLAPSMYEAGFMS-MSHTDEDIEKTIAIAEEV 464
                567888999***********************************99765...5667778999999**********97.689********9775...5554444444...45669**********86.56666666666554...56677777777643...334446788**********************66.88999999****************************.778888****************99766.8************999876...579999************************************999988356699999999*****9999988842.323333323333444567778888888877666555554.455666677766666665 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.7   0.3   4.1e-39   1.5e-36      12     369 ..      64     406 ..      55     435 .. 0.83

  Alignments for each domain:
  == domain 1    score: 123.7 bits;  conditional E-value: 4.1e-39
  TIGR00709  12 sevrsy..vrklplafakakGckvtdveGkeyldflaGaGtlalGhndealkqklkdvldsglvlhtldlttklkdafieallaillkpkeeyilqftGpsGadaveaalklakkytGrsnvisfsgGfhGmtiGalaltGnlsaknavenllsgvqflpydheyreplglggeagadavieyienfledvesGvdkpaavileaiqGeGGvvaasveflrkirevtrkrdillildevqaGvarsGklfafehaGiepdvvvlskavGGglplavlaikke.fdafqpae...htGtfrGnqlalatGlealeilkdenlaknaqergerltsalddlikeypeiknvrGrGlmlGieivder 369
                s vr++  v + p++f + kG + +dv+ ++y+d++   G   lGh d+ ++ ++ +++++g     +    +l +++++a+ a ++      +++ft  sG++a    ++l +  tGr +vi f g +hG +   l  +G   a  +    l++   +p      + +        d+v+  +e    +     d  aavile + G+ G +  s efl+ ire++++++ ll++dev +G+       a e  G+ pdv  + k +GGglp+   + +k+   + +pa+    +Gt+ Gn la+++G+e+++ l +  +  +   ++++l + + +  k++    +    G m G   ++e+
  MMETSP1061-20121228|240_1  64 SPVRAFksVGGNPVVFDRVKGAYAWDVDENKYIDYVGTWGPAILGHADDDVLEAVSKTMAKGTS---FGAPCPLENELAKAVIAAVPSV---EMVRFT-NSGTEACMGMIRLVRAHTGREKVIKFEGCYHGHADAFLVQAGSGVATLG----LPDSPGVPSAATKAT-FC-AEYNNIDSVKAIFE----EN---KDEIAAVILEPVVGNSGFIKPSQEFLEAIRELCNENGSLLVFDEVMTGFR-VSYGGAQEYFGVTPDVTTMGKVIGGGLPVGAYGGRKDiMQQVAPAGpmyQAGTLSGNPLAMTAGIETMKKLSQPGVYDELERKSKKLVDGIMEAGKKHGHAIQGDFAGGMFGWYFTEEK 406
                566766334578************************************************9975...66799***************43...457887.69*********************************99999998766544....666667776544333.32.12223344444443....33...34569*******************************************95.5566799**********************9988877725778898755478*********************************************99865555555666666655554 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.2     7e-39   2.6e-36      71     382 ..      89     397 ..      67     414 .. 0.83

  Alignments for each domain:
  == domain 1    score: 123.3 bits;  conditional E-value: 7e-39
  TIGR03372  71 dtqgqeyldclggygifnvghrnpvvvaavesqlakqplhsqelldplrallaktlaaltpgklkysffsnsgtesveaalklakayqsprgkytfiaasgafhgkslgalsa..taksafrkpfmpllpgfr.hva....fgdieamlkalqeckktgddvaavilepiqgeggvilppenyltavrklcdevgallildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatvateevfs.vlfenpflhtttfggnplacaaalatvnvlleknlpeqaeikgellldglrqlaaeypdlvieargkgl 382
                d + ++y+d +g +g   +gh +  v+ av + +ak          pl   lak++ a  p  +    f+nsgte+    ++l +a+    g+   i   g++hg++   l    +  +++  p  p +p    + +    + +i++++      +   d++aavilep+ g+ g i p +++l a+r+lc+e g+ll++dev tg+ r     a e+ +v pd+  + k +ggg +p+ga    ++++  v    p+ ++ t+ gnpla +a + t+++l +  + ++ e k + l+dg+ +  +++ + ++     g+
  MMETSP1061-20121228|240_1  89 DVDENKYIDYVGTWGPAILGHADDDVLEAVSKTMAKGTS--FGAPCPLENELAKAVIAAVPS-VEMVRFTNSGTEACMGMIRLVRAHT---GREKVIKFEGCYHGHADAFLVQagSGVATLGLPDSPGVPSAAtKATfcaeYNNIDSVKAIF---EENKDEIAAVILEPVVGNSGFIKPSQEFLEAIRELCNENGSLLVFDEVMTGF-RVSYGGAQEYFGVTPDVTTMGKVIGGG-LPVGAYGGRKDIMQqVAPAGPMYQAGTLSGNPLAMTAGIETMKKLSQPGVYDELERKSKKLVDGIMEAGKKHGHAIQGDFAGGM 397
                78899*******************************875..55678************9996.678899*******999999999974...66678999******98766643013345566666666665431333111134455444443...34569**********************************************8.788889******************999.6*****99998875277789*********************************************9999988888876655555 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.1   0.0   6.7e-29   2.5e-26       9     343 ..      65     390 ..      61     418 .. 0.78

  Alignments for each domain:
  == domain 1    score: 90.1 bits;  conditional E-value: 6.7e-29
  TIGR02407   9 evrsysr..sfptvfekakgaklldedgkeyidflagaGalnyGhnneklkealldylaedgivhsldmateakkefletfeevilkPreldykvqftgPtGtnavesalklarkvtgrenvvaftnafhGmslgslavtgnkskreeagvslsnvvrlPydgyldeevdslayleklledsssGvdlPaaviletvqgeGGlnvaskeWlrsleklcrehdillivddiqaGcGrtGtffsfeeagikPdivclsksisGiGlPlalvllkpe.ldvwkPg...ehnGtfrGnnlafvaataalekyWkddelekavkkksekvkerleeivekypelkk 343
                 vr++      p+vf++ kga+ +d+d+++yid++ + G    Gh ++++ ea+ + +a+     s+           + + ++++        v+ft   Gt+a    ++l+r +tgre+v+ f  ++hG++ + l  +g+     +    +  v +      +  e ++++ ++ ++e++    d  aavile v g+ G    s+e+l+++++lc+e++ ll+ d++ +G  r     + e  g++Pd+ ++ k i+G GlP+     +++ + + +P+    ++Gt+ Gn la+ a+ ++++k  ++  + +++++ks+k+ + + e  +k+ + ++
  MMETSP1061-20121228|240_1  65 PVRAFKSvgGNPVVFDRVKGAYAWDVDENKYIDYVGTWGPAILGHADDDVLEAVSKTMAKGT---SFGAPCPLE----NELAKAVIAAVPSVEMVRFTN-SGTEACMGMIRLVRAHTGREKVIKFEGCYHGHADAFLVQAGSGVATLGLP-DSPGVPSAATKATFCAEYNNIDSVKAIFEENK---DEIAAVILEPVVGNSGFIKPSQEFLEAIRELCNENGSLLVFDEVMTGF-RVSYGGAQEYFGVTPDVTTMGKVIGG-GLPVGAYGGRKDiMQQVAPAgpmYQAGTLSGNPLAMTAGIETMKK-LSQPGVYDELERKSKKLVDGIMEAGKKHGHAIQ 390
                556554311679****************************************9998877643...222233333....334444444333344588886.7************************************9999988765553.23333334444444445799999999999987...6679****************************************9997.77777789999***************.****9887666523455554222799******************8.788889999999999998888877777665554 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.7   6.5e+02     111     141 ..      73     103 ..      67     114 .. 0.60
   2 !   56.9   0.0   7.3e-19   2.7e-16     198     367 ..     220     390 ..     205     406 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.7
  TIGR03251 111 GGalavenalktafdwksrkneargieaelG 141
                GG   v + +k a+ w + +n+  ++    G
  MMETSP1061-20121228|240_1  73 GGNPVVFDRVKGAYAWDVDENKYIDYVGTWG 103
                5555566666777777766666555444444 PP

  == domain 2    score: 56.9 bits;  conditional E-value: 7.3e-19
  TIGR03251 198 kaleeealaqakaafaeeeddiaaliiePiqgeGGdnhlrpeflralrklcdehdallvldevqtGvGltGkawayqqlgvkPdvvafGkktqvcGil..a.grrvdevadnvfkvssrlnstfGGnlvdmvratrileiieeerlvdrareqGehllarleelaaefpklvs 367
                  +e + +  +ka f+e++d+iaa+i+eP+ g+ G      efl+a+r+lc+e+  llv+dev tG  ++    a + +gv+Pdv ++Gk    +G+   a g r d +++   + +     t  Gn   m      ++ + +  + d+ +++ ++l   + e ++++ ++++
  MMETSP1061-20121228|240_1 220 FCAEYNNIDSVKAIFEENKDEIAAVILEPVVGNSGFIKPSQEFLEAIRELCNENGSLLVFDEVMTGFRVS-YGGAQEYFGVTPDVTTMGKVIG-GGLPvgAyGGRKDIMQQVAPAGPMYQAGTLSGNPLAMTAGIETMKKLSQPGVYDELERKSKKLVDGIMEAGKKHGHAIQ 390
                5678899999********************************************************9876.4468999***********9653.2221112234556555555566677777888888888888888888888888888888888888888888888877776 PP

>> TIGR00699  GABAtrns_euk: 4-aminobutyrate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.13        47      44      84 ..      79     119 ..      71     149 .. 0.82
   2 !   30.9   0.0   6.7e-11   2.5e-08     236     430 ..     225     419 ..     215     430 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.13
  TIGR00699  44 yekslGnylvdvdGnvlldlyaqiasipiGynnPallkvak 84 
                +++  G y  dvd n+++d         +G+ +  +l ++ 
  MMETSP1061-20121228|240_1  79 FDRVKGAYAWDVDENKYIDYVGTWGPAILGHADDDVLEAVS 119
                67889**************8887777777777777666654 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 6.7e-11
  TIGR00699 236 rcleeveelikkyrkpvaaiivePiqseGGdnhasddffrklrditkkhnvvfivdevqtGvGatGklwahehwnleePadlvtfskklqta...Gyffhd....ealrPnkpyrqfntwlGdPsralllreiieeikdkdllenvaavGdylyagleelakkyPeklqnlrgkGrGtfiawdtpdeakrdklllklklkGv 430
                + ++ v+ + ++ + ++aa+i+eP+  + G  + s++f++ +r++ + ++ + + dev tG   +    a e++++   +d+ t+ k +  +   G + +     +++ P+ p  q  t  G+P  +    e ++++++  + ++ ++  + l  g+ e  kk+ + +q   g   G +  w    e+k +++   +k +G 
  MMETSP1061-20121228|240_1 225 NNIDSVKAIFEENKDEIAAVILEPVVGNSGFIKPSQEFLEAIRELCNENGSLLVFDEVMTGFRVS-YGGAQEYFGVT--PDVTTMGKVIGGGlpvGAYGGRkdimQQVAPAGPMYQAGTLSGNPLAMTAGIETMKKLSQPGVYDELERKSKKLVDGIMEAGKKHGHAIQ---GDFAGGMFGWYFT-EEKVKNFAEAAKSDGE 419
                5689999******************************************************8654.23588998875..799999987754333366666511224578999****************************************************99876...5556667777665.4555567777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.44
# Mc/sec: 1403.88
//
Query:       MMETSP1061-20121228|247_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 355.64
//
Query:       MMETSP1061-20121228|245_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 276.35
//
Query:       MMETSP1061-20121228|244_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    5.0  11.1        1.6    4.7   7.7    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.7   0.00039       1.6     222     407 ..      44     182 ..       9     240 .. 0.41

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00039
  TIGR00934 222 sisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfq.kmveknvkaakrkkknfkkreanlklfeksryakksdrneedngn 407
                + + +++d+++e+++++  p++   ++  +++++  d+ +s + + ++                                                 + + +l + k  ++++  + + s     a+a +l++  +++++q +  ++n ++++++k+ +  +  n+  f   +++++++rn++ +  
  MMETSP1061-20121228|244_1  44 EAKRQKLDKAQEEQRQQPPPPSLANSKAVQEELHRMDILSSAAVMFSTR------------------------------------------------DLIPKLFDAKPQQEQRENESRSSSNDALASALQLQQQLQQQQQQqQDQDNNSNNNNNNKSATSASAPNNTPFVLEPASRRASRNRNRSVS 182
                2222344444444444444444444444444444444444444444444................................................444444444444433333333333333333333333222222220222222222222222333333333333333333333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       361  (0.0880059); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1120.02
//
Query:       MMETSP1061-20121228|249_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-08   31.6   5.7    0.00018   17.9   0.8    3.2  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    1.1e-07   29.6   1.2     0.0021   15.7   0.0    3.7  3  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
    6.9e-06   23.8   0.1      0.032   11.8   0.0    2.9  3  TIGR01008 rpsC_E_A: ribosomal protein S3
      2e-05   21.1   0.6      2e-05   21.1   0.4    2.1  3  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
  ------ inclusion threshold ------
      0.013   13.7   0.9        1.6    6.9   0.0    3.3  4  TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
      0.024   12.2   1.4        0.2    9.2   0.2    2.6  3  TIGR01009 rpsC_bact: ribosomal protein S3


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.8   2.7e-07   0.00018     522     587 ..     184     251 ..     172     255 .. 0.79
   2 !    8.0   0.1   0.00025      0.17     555     588 ..     318     351 ..     314     392 .. 0.86
   3 !    6.3   0.0   0.00082      0.56     552     613 ..     405     471 ..     383     483 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.7e-07
  TIGR03591 522 qakegRlhiLdkmekvisep.reelseyaPri.etikinkdkireviGkgGkvireiieetgakidie 587
                ++k+ +++ L+k +++ +++  ++ +++aP++  t++i+  +++ +iG++G+++++i+e+tg+++d++
  MMETSP1061-20121228|249_1 184 KSKKKKTTALKKQQQAAAAEaASAETAVAPKTsITVTIDATRVGIIIGPKGATMNAIQEKTGTRLDVN 251
                66777777888777766554045556789*9735899*****************************97 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00025
  TIGR03591 555 ikinkdkireviGkgGkvireiieetgakidied 588
                +++++  + e++G+gGk+i++i+ + ++k++i  
  MMETSP1061-20121228|249_1 318 VSVHPRFLSEIVGTGGKTIKAIQTALDIKLTIPK 351
                78999999*******************9999864 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.00082
  TIGR03591 552 ietikinkdkireviGkgGkvireiieetgakidiedd.....Gtvkiaaadkeaaekakklieeit 613
                 +++ ++++  + viG+ G+ i++i  ++++++++  d      +  i   +++++eka++ i+ ++
  MMETSP1061-20121228|249_1 405 HQEVYVPQEFFHCVIGSRGSEIKHIRGNYKVEVHMPSDdswstTENVICVGKSNDVEKAITYIKLLM 471
                5678899**************************9965534542223345556677888888888665 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.1e-06    0.0021       2      35 ..     219     252 ..     218     256 .. 0.93
   2 !    4.7   0.1    0.0071       4.8     100     125 ..     325     350 ..     295     398 .. 0.72
   3 !    5.8   0.0    0.0033       2.2       2      40 ..     408     446 ..     407     471 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.1e-06
  TIGR03665   2 vkipkdrigvliGkkgevkkeieektkvkleids 35 
                v+i+  r+g++iG kg +++ i+ekt+++l+++ 
  MMETSP1061-20121228|249_1 219 VTIDATRVGIIIGPKGATMNAIQEKTGTRLDVNA 252
                7899**************************9975 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0071
  TIGR03665 100 kgriIGeeGktrkiieeltgvkisvy 125
                 + i+G++Gkt k i+   + k+++ 
  MMETSP1061-20121228|249_1 325 LSEIVGTGGKTIKAIQTALDIKLTIP 350
                44555555555555555555544443 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0033
  TIGR03665   2 vkipkdrigvliGkkgevkkeieektkvkleidseegev 40 
                v +p++  + +iG++g+  k+i  + kv++++ s+++  
  MMETSP1061-20121228|249_1 408 VYVPQEFFHCVIGSRGSEIKHIRGNYKVEVHMPSDDSWS 446
                6799999***********************998886543 PP

>> TIGR01008  rpsC_E_A: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   4.7e-05     0.032      38      76 ..     215     253 ..     196     269 .. 0.85
   2 !    7.6   0.0   0.00088       0.6      41      88 ..     317     364 ..     290     372 .. 0.77
   3 ?   -0.0   0.0      0.19   1.3e+02      42      67 ..     408     433 ..     392     442 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.7e-05
  TIGR01008  38 lgtkviifaerpglviGrrGrrireltellkkkfglenp 76 
                +  +v+i a+r g++iG +G+++++++e+  ++ +++ p
  MMETSP1061-20121228|249_1 215 TSITVTIDATRVGIIIGPKGATMNAIQEKTGTRLDVNAP 253
                34578999********************99988888766 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00088
  TIGR01008  41 kviifaerpglviGrrGrrireltellkkkfglenpqieveevenpel 88 
                +v ++    + ++G +G++i++++  l+ k  +++   +++ v+  ++
  MMETSP1061-20121228|249_1 317 SVSVHPRFLSEIVGTGGKTIKAIQTALDIKLTIPKTDWNAKTVQIGNV 364
                556666666789*********************999999999886555 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.19
  TIGR01008  42 viifaerpglviGrrGrrireltell 67 
                v +  e    viG rG+ i+++    
  MMETSP1061-20121228|249_1 408 VYVPQEFFHCVIGSRGSEIKHIRGNY 433
                5555566678**********997655 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.4   2.9e-08     2e-05     555     614 ..     188     250 ..     178     254 .. 0.72
   2 ?   -1.3   0.1      0.17   1.1e+02     590     615 ..     325     350 ..     315     368 .. 0.77
   3 ?   -3.1   0.0      0.59     4e+02     209     252 ..     357     405 ..     340     429 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.9e-08
  TIGR02696 555 arlaildvlaeaidspdel..setaprv.iavkipvdkigevigpkgkvinsiqdetgaeisi 614
                 +++ l+  ++a ++ +    +  ap+  i+v+i   ++g +igpkg ++n+iq++tg+ + +
  MMETSP1061-20121228|249_1 188 KKTTALKKQQQAAAAEAASaeTAVAPKTsITVTIDATRVGIIIGPKGATMNAIQEKTGTRLDV 250
                555556555554444433300445677448999*************************98776 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.17
  TIGR02696 590 igevigpkgkvinsiqdetgaeisie 615
                + e++g  gk+i +iq     +++i 
  MMETSP1061-20121228|249_1 325 LSEIVGTGGKTIKAIQTALDIKLTIP 350
                689*************9888777774 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.59
  TIGR02696 209 elvkggakapteevvaeg.....leaakpfikvlcraqadlaekaaket 252
                + v+ g  +p+ ++  +g     ++aak  i+ lc+  ++  ++ +  +
  MMETSP1061-20121228|249_1 357 KTVQIGNVEPSCRIGIAGdlpanVKAAKQVIRDLCQYHHHEITHPGLIH 405
                5555566666555432222222278999999999988766555555555 PP

>> TIGR01952  nusA_arch: NusA family KH domain protein, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0023       1.6      34      68 ..     216     250 ..     189     266 .. 0.74
   2 ?    2.2   0.0     0.065        44     104     127 ..     318     341 ..     284     349 .. 0.81
   3 ?    1.3   0.2      0.13        85      93     129 ..     351     387 ..     327     398 .. 0.67
   4 ?   -3.3   0.0       3.2   2.2e+03      47      59 ..     418     430 ..     410     440 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0023
  TIGR01952  34 rvvfvvkkgemgvAiGkgGanvkkveellgkkvel 68 
                 +   + +  +g+ iG++Ga++++++e+ g ++++
  MMETSP1061-20121228|249_1 216 SITVTIDATRVGIIIGPKGATMNAIQEKTGTRLDV 250
                55666777777777777777777777777777665 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.065
  TIGR01952 104 vevepedkgvaiGkdGknierake 127
                v+v+p+  + ++G +Gk+i+ ++ 
  MMETSP1061-20121228|249_1 318 VSVHPRFLSEIVGTGGKTIKAIQT 341
                788888888888888888876654 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.13
  TIGR01952  93 vseknskkvayvevepedkgvaiGkdGknierakela 129
                 ++ n+k+v + +vep+ +  + G+   n++ ak+++
  MMETSP1061-20121228|249_1 351 KTDWNAKTVQIGNVEPSCRIGIAGDLPANVKAAKQVI 387
                2345777788888888888888888888888888776 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 3.2
  TIGR01952  47 AiGkgGanvkkve 59 
                 iG  G+++k+++
  MMETSP1061-20121228|249_1 418 VIGSRGSEIKHIR 430
                3455555555444 PP

>> TIGR01009  rpsC_bact: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.2   0.00029       0.2      57      91 ..     210     244 ..     171     253 .. 0.70
   2 ?   -0.8   0.0      0.33   2.2e+02      66     108 ..     318     360 ..     314     398 .. 0.69
   3 ?   -0.0   0.0      0.19   1.3e+02      66      95 ..     408     437 ..     384     443 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00029
  TIGR01009  57 iereadkvevtihtarPglvigkkgkeieklkkel 91 
                    +++++vti ++r g++ig kg+ ++ ++++ 
  MMETSP1061-20121228|249_1 210 AVAPKTSITVTIDATRVGIIIGPKGATMNAIQEKT 244
                2234567*********************9999875 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.33
  TIGR01009  66 vtihtarPglvigkkgkeieklkkelkklvgskevkinikevk 108
                v +h  + + ++g  gk i+ ++ +l+ +++  + + n k v+
  MMETSP1061-20121228|249_1 318 VSVHPRFLSEIVGTGGKTIKAIQTALDIKLTIPKTDWNAKTVQ 360
                6677777778999999999999999887776644444444333 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.19
  TIGR01009  66 vtihtarPglvigkkgkeieklkkelkklv 95 
                v++   +   vig++g+ei++++ + k +v
  MMETSP1061-20121228|249_1 408 VYVPQEFFHCVIGSRGSEIKHIRGNYKVEV 437
                5666667788***********998776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.32s 00:00:00.76 Elapsed: 00:00:00.66
# Mc/sec: 987.92
//
Query:       MMETSP1061-20121228|251_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.23s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 140.50
//
Query:       MMETSP1061-20121228|250_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-19   66.0   0.2    8.2e-19   65.7   0.2    1.2  1  TIGR00448 rpoE: DNA-directed RNA polymerase


Domain annotation for each model (and alignments):
>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.7   0.2     2e-22   8.2e-19       1     150 [.       1     153 [.       1     178 [. 0.94

  Alignments for each domain:
  == domain 1    score: 65.7 bits;  conditional E-value: 2e-22
  TIGR00448   1 lyillkiadlvrvPPdkfekdleevikklLnekfegrldknvGlvitikdi..edigeGkvieGdGsayievvfealvfkPelqeiveGevieivefGafvslGplddllhvsqvlddyvv.ydpkkealigketkkvldvgdkvrarivals 150
                ++++  +   + + P+ f+  l+ +i++lL+e+ eg    ++G+v+ + ++  ++i+ G +    G + ++v ++al+ +P+++e+++  v++++  G f  +Gpl  ++    + +d +  ++p+k++++  + + v+  g  vr ri   +
  MMETSP1061-20121228|250_1   1 MFYVKTLEHEIVLQPSYFGPKLKATIVRLLKEEVEGLALAEYGFVVNVIEVpeDQIKSGIIEYDTGNVVFNVKYTALLLRPFVNEVLDAVVSQCTTLGFFAYVGPLRVFVSKHSMPEDMLNgWNPDKDSWVSDDKEVVISSGCGVRLRIKGRT 153
                8999999999999*************************************954469999999999**************************************************99998559**************************8665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 766.39
//
Query:       MMETSP1061-20121228|253_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.20s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1061-20121228|252_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22    7.6   2.8       0.32    7.0   1.9    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        1.4    5.9  45.5        2.9    4.8  31.6    1.4  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   1.9   0.00016      0.32     322     406 ..     449     536 ..     344     554 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00016
  TIGR00934 322 trlaktksfdd.skavrlersktidraeasdleeldrakdfqkmvek.nvkaakrk.kknfkkreanlklfeksryakksdrneedng 406
                   +k+  +d+ ++a+rle++k    ae++ ++e  +a++ ++  ++ + ++ krk k+ +  + + +k+ e+   ++k + n+++++
  MMETSP1061-20121228|252_1 449 GDSYKEGDEDGaEEAARLEEEKAAVEAEQKRIKEEREAEKAKEEAYRkKEEEEKRKyKEAMDAQRQLNKMAEENARKEKEEANKKKEA 536
                3334444444455566666666555555555544444433333322202222222202222223333333333222222222222222 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  31.6    0.0014       2.9     114     204 ..     460     537 ..     421     550 .. 0.44

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0014
  TIGR02794 114 aeeaakekeekkkqaeeakakqaaEa.kakaeaeaKaekkakeeAakkaEeeakakaa..aeakkkaEaeeakkkaeaeakKakaeaeaKakae 204
                aeeaa+   e++k+a       +aE+ + k+e ea   +kakeeA +k+Eee k k +   +a+++       k ae+ a+K+k+ea +K++a 
  MMETSP1061-20121228|252_1 460 AEEAAR--LEEEKAAV------EAEQkRIKEEREA---EKAKEEAYRKKEEEEKRKYKeaMDAQRQLN-----KMAEENARKEKEEANKKKEAA 537
                222222..12222222......2222122222222...344455533333333333330033333332.....223333334444444444222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       499  (0.121648); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.26s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 1861.05
//
Query:       MMETSP1061-20121228|255_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 541.61
//
Query:       MMETSP1061-20121228|243_1  [L=1039]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-50  170.3   3.2    2.5e-20   70.4   0.0    4.3  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.8e-42  143.4   0.0    1.4e-12   44.5   0.0    4.1  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    5.2e-38  129.1   0.0    6.7e-15   52.8   0.0    3.9  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    7.1e-37  124.9   0.0    2.2e-14   51.2   0.0    4.3  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
      6e-36  121.9   1.1    3.4e-12   44.1   0.0    4.4  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.1e-33  114.6   3.6      1e-12   45.8   0.1    4.3  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.5e-32  110.5   1.6      5e-09   33.7   0.0    4.3  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    6.6e-32  108.6   0.0    1.2e-13   48.4   0.0    4.2  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.2e-31  107.7   0.0    4.1e-11   39.9   0.0    4.2  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.7e-31  107.5   0.0    2.7e-09   34.9   0.0    4.3  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    6.8e-31  105.5   0.1    2.4e-14   51.4   0.1    4.2  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.4e-30  104.4   0.3    7.9e-10   36.6   0.0    4.7  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.7e-30  104.0   0.0    4.4e-09   34.0   0.0    4.5  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.3e-29  101.2   0.0    2.6e-09   34.7   0.0    4.4  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.4e-29   99.9   0.0    1.1e-08   31.6   0.0    4.2  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.8e-29  100.0   0.0    2.1e-11   41.6   0.0    4.3  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.4e-29   99.6   0.1    6.4e-12   43.2   0.0    4.5  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    3.9e-29   99.6   0.8    1.4e-11   42.1   0.3    4.4  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      4e-29   99.4   0.0    6.3e-09   32.7   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.5e-28   97.8   0.0    6.4e-08   30.2   0.0    4.3  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.9e-28   95.9   0.0    1.3e-09   35.1   0.0    3.4  3  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.1e-27   95.1   0.5    9.9e-10   36.2   0.1    4.3  4  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    5.9e-27   92.2   0.0    4.9e-09   33.0   0.0    3.6  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.1e-26   89.8   0.0      1e-09   35.3   0.0    4.2  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    3.9e-26   89.4   0.0    2.4e-09   33.9   0.0    4.1  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    7.2e-26   89.1   0.1      3e-09   34.4   0.0    4.1  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    8.5e-26   88.7   0.0      9e-10   36.3   0.0    4.3  4  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    6.3e-25   85.9   0.0    3.9e-11   40.8   0.0    4.1  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.2e-24   85.0   1.4    2.4e-08   31.8   0.8    4.5  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.2e-24   85.0   0.0    8.1e-10   36.3   0.0    4.2  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    9.9e-24   82.1   0.1    1.1e-07   29.6   0.0    4.5  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.7e-23   81.2   0.0    2.8e-08   31.4   0.0    4.0  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.9e-23   80.8   0.1    1.2e-08   32.3   0.0    4.3  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.5e-23   80.1   0.1    9.9e-08   28.5   0.0    3.8  4  TIGR00958 3a01208: antigen peptide transporter 2
    2.8e-23   80.2   0.2    1.7e-06   25.1   0.0    4.2  4  TIGR01288 nodI: nodulation ABC transporter NodI
    1.4e-22   77.9   0.0    3.6e-08   30.2   0.0    4.1  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.6e-22   77.8   0.0    1.2e-08   32.2   0.0    4.2  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.9e-22   77.0   0.0    1.1e-09   35.7   0.0    4.4  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    4.4e-22   76.7   0.1    3.3e-06   24.8   0.0    4.5  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.6e-21   74.6   0.4    1.9e-09   35.1   0.0    4.3  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.1e-21   74.3   0.0    1.9e-07   28.6   0.0    4.3  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.2e-21   73.7   0.1    2.6e-09   34.7   0.0    4.4  4  TIGR01978 sufC: FeS assembly ATPase SufC
    4.4e-21   73.1   0.1    2.8e-07   27.7   0.0    4.4  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      3e-20   70.0   0.0    2.3e-06   24.2   0.0    4.3  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    3.4e-20   70.0   0.0    9.6e-09   32.2   0.0    3.3  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    4.2e-20   70.2   0.2      4e-07   27.7   0.0    4.3  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
      6e-20   69.2   0.0    2.2e-06   24.4   0.0    4.2  4  TIGR00955 3a01204: pigment precursor permease
    1.9e-17   59.9   0.1    4.9e-09   32.0   0.0    3.2  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
      4e-17   60.2   0.2    5.8e-06   23.5   0.0    4.4  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    4.8e-16   55.3   0.0    2.3e-08   29.8   0.0    3.5  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.2e-12   45.3   1.0    8.7e-07   26.0   0.0    3.7  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.4e-10   36.5   0.4     0.0035   12.0   0.0    3.3  3  TIGR01257 rim_protein: rim ABC transporter
    1.2e-09   35.9   0.0      0.029   11.7   0.0    4.2  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    4.2e-09   33.2   0.0       0.04   10.1   0.0    4.2  4  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    7.8e-09   32.4   0.1      3e-05   20.6   0.0    2.8  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    0.00037   18.1   0.0      0.046   11.3   0.0    2.8  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0021   13.5   0.3        2.8    3.2   0.0    3.6  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0032   13.6   0.1        1.8    4.5   0.0    3.4  4  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
  ------ inclusion threshold ------
       0.01   12.9   0.0       0.28    8.2   0.0    2.5  2  TIGR02858 spore_III_AA: stage III sporulation protein AA


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.3e-06    0.0003     328     385 ..     415     472 ..     378     521 .. 0.81
   2 !   70.4   0.0   3.5e-22   2.5e-20     155     248 ..     524     618 ..     520     625 .. 0.94
   3 !   27.9   0.0   2.6e-09   1.8e-07       6      77 ..     656     728 ..     651     772 .. 0.75
   4 !   51.5   0.0   1.9e-16   1.3e-14     158     296 ..     883    1018 ..     860    1036 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.3e-06
  TIGR03719 328 lskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetv 385
                 + a+g k+l+++ ++kl +g   G++G n +Gk+tl++ i++++ +   +++  +tv
  MMETSP1061-20121228|243_1 415 FTLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANNQVEGFPDVTQVKTV 472
                4568*************************************99887665555555555 PP

  == domain 2    score: 70.4 bits;  conditional E-value: 3.5e-22
  TIGR03719 155 edakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykG.tvvavthdryfldnvaeWileldrGegipykgnysswle 248
                 d+ v++lsGG + ++al+r +l++ d+llldePtnhld   vaW++ +l++ +  t ++v hd  +l++ +  il ++  +   +kgn  ++++
  MMETSP1061-20121228|243_1 524 PDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPNvTCIMVSHDTGLLNDCCTNILKFENLKLRTFKGNLDEFVK 618
                6899************************************************975489*******************************998875 PP

  == domain 3    score: 27.9 bits;  conditional E-value: 2.6e-09
  TIGR03719   6 tmkrvskvvpp.kkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqeP 77 
                +m++ + ++p+ +k  l +i+++   ++++  +G nGaGkst++k++ G     eG+++++++++v y++q  
  MMETSP1061-20121228|243_1 656 KMANCTFTYPGnTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWKHPNARVAYVAQHA 728
                5666666666535677888888888888888888888888888888888888888888888888888888864 PP

  == domain 4    score: 51.5 bits;  conditional E-value: 1.9e-16
  TIGR03719  158 kveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspka.rqakskarlaryeel 296 
                 +++ lsGG+k +v ++  +  +P +++ldePtn+ld es+  l + ++ ++G v+++ h+  f+   +     +d G+    kg+ ++w+ +++++++ +++ ++  + a  + +e v++ pk   +  +ka +++ ++ 
  MMETSP1061-20121228|243_1  883 RMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDGGVIIISHNNEFVSTLCPETWVMDAGHLE-TKGD-ADWMLKQDTKIDDQQQLQEMTD-AAGNKVE-VQTGPKKlSKKEEKALIKKIKKK 1018
                 6789**************************************************************99877778999865.5776.6777777777765555443333.3333344.44444441344456666665554 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0021      0.15     467     515 ..     409     457 ..     398     477 .. 0.91
   2 !   41.9   0.0   1.3e-13   8.9e-12     602     666 ..     529     592 ..     496     614 .. 0.88
   3 !   44.5   0.0   2.1e-14   1.4e-12     466     524 ..     655     713 ..     644     717 .. 0.93
   4 !   43.4   0.0   4.5e-14   3.1e-12     602     692 ..     885     974 ..     865     978 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0021
  TIGR03375 467 elknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllg 515
                el n++f+    +k  L+n+++k+  G   +++G + +GK+tl++ +++
  MMETSP1061-20121228|243_1 409 ELCNCTFTLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIAN 457
                5678888888889999****************************98765 PP

  == domain 2    score: 41.9 bits;  conditional E-value: 1.3e-13
  TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe 666
                + LSgG r  +alaRa+l++ +illLDEPt++lD  + + +++ L++l  + T ++v+H t lL+
  MMETSP1061-20121228|243_1 529 STLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSL-PNVTCIMVSHDTGLLN 592
                57*******************************************975.679********99996 PP

  == domain 3    score: 44.5 bits;  conditional E-value: 2.1e-14
  TIGR03375 466 ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsv 524
                +++ n++f+Yp+++k++L n++++++  ++va iG++G+GKst+ kll+g ++p+eG v
  MMETSP1061-20121228|243_1 655 MKMANCTFTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                6889*****************************************************98 PP

  == domain 4    score: 43.4 bits;  conditional E-value: 4.5e-14
  TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe.lvdriivldkGrivadGpkdevleal 692
                ++LSgGQ+  v++a a+ ++p+i++LDEPt+ lD++s   l ++++++  d  +++++H +++++ l+    v+d G++   G+ d +l++ 
  MMETSP1061-20121228|243_1 885 SALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF--DGGVIIISHNNEFVStLCPETWVMDAGHLETKGDADWMLKQD 974
                68*************************************999999987..55699*****9988549*****************99999876 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.0   9.6e-17   6.7e-15     324     522 ..     410     593 ..     374     599 .. 0.70
   2 !   36.6   0.0   7.7e-12   5.4e-10     319     380 ..     652     714 ..     629     737 .. 0.84
   3 !   34.0   0.0   4.8e-11   3.3e-09     457     521 ..     885     947 ..     864     956 .. 0.86

  Alignments for each domain:
  == domain 1    score: 52.8 bits;  conditional E-value: 9.6e-17
  TIGR02857 324 lenvsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldad.....swrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalael 522
                l n +++   g+k  l++ ++++  g+ ++l+G   +GK+tl++ ++      eG   v +++   ++ad     s  + + +v+  P++           a  +  +++++e+l  +g++e  ka p       +++ + LSgG r +laLAra+l++a++lllDEPt hLD    a v+  l++ + + t ++v+H++ l+++
  MMETSP1061-20121228|243_1 410 LCNCTFTLaYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANNQV--EGFPDVTQVKTVFVEADiqgeqSHLSCVDYVAVDPAI-----------AALNIGTSKIREVLGTVGFTEDGKAKP-------DHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNS-LPNVTCIMVSHDTGLLND 593
                444555544566668899999999999999999999999999987765432..3433333333322222200000224445555555544...........444445667999999999988766666.......78889******************************************9999.5789********998876 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 7.7e-12
  TIGR02857 319 ssslelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGail 380
                +  ++++n +++y+g++ p l ++ ++v+  ++va +G+ GaGKst++kll+g + p+eG + 
  MMETSP1061-20121228|243_1 652 KALMKMANCTFTYPGNTkPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVW 714
                447899*********999******************************************986 PP

  == domain 3    score: 34.0 bits;  conditional E-value: 4.8e-11
  TIGR02857 457 agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                + LSgGq+ ++ +A a+  + ++++lDEPt  LD+e+   + +a++ +  g  v++++H+++ + 
  MMETSP1061-20121228|243_1 885 SALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDGG--VIIISHNNEFVS 947
                67*********************************************8766..8999**998654 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0     0.002      0.14       8      49 ..     416     457 ..     409     494 .. 0.87
   2 !   51.2   0.0   3.2e-16   2.2e-14     132     209 ..     525     600 ..     495     610 .. 0.90
   3 !   21.2   0.0   4.5e-07   3.2e-05      19      59 ..     674     714 ..     661     729 .. 0.84
   4 !   37.6   0.0   4.4e-12   3.1e-10     134     227 ..     883     973 ..     867     978 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.002
  TIGR03873   8 svraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaG 49 
                ++  g+++++ + +++   G   gllG n +Gk+tl+r +a 
  MMETSP1061-20121228|243_1 416 TLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIAN 457
                66778999999999999*********************9875 PP

  == domain 2    score: 51.2 bits;  conditional E-value: 3.2e-16
  TIGR03873 132 drdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvv 209
                d ++stlsGG r +  lara+ q+  +llldePtnhldv     + + +++l  ++vt ++  hd  l    c +++ 
  MMETSP1061-20121228|243_1 525 DHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSL--PNVTCIMVSHDTGLLNDCCTNILK 600
                7899***********************************9999999999999..9******************99875 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 4.5e-07
  TIGR03873  19 dvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevd 59 
                +++v++   +  + +G nG+Gkst+++ll+G +ap++G+v 
  MMETSP1061-20121228|243_1 674 NITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVW 714
                66777777788899************************994 PP

  == domain 4    score: 37.6 bits;  conditional E-value: 4.4e-12
  TIGR03873 134 dlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltp 227
                 +s+lsGG++ +v +a a+  +P++++ldePtn+ld ++  +l  ++ +       v++  h+ ++  ++c +  v+d+G + + G++  +l +
  MMETSP1061-20121228|243_1 883 RMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF---DGGVIIISHNNEFVSTLCPETWVMDAGHLETKGDADWMLKQ 973
                689*********************************77766666667666...55678888***********************9998877765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.1   7.8e-06   0.00054       7      71 ..     415     479 ..     410     490 .. 0.76
   2 !   42.8   0.0   1.2e-13   8.4e-12     120     209 ..     506     594 ..     485     618 .. 0.88
   3 !   12.9   0.0   0.00016     0.011       2      47 ..     655     702 ..     654     709 .. 0.85
   4 !   44.1   0.0   4.9e-14   3.4e-12     118     236 ..     862     976 ..     844     986 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 7.8e-06
  TIGR00972   7 lklfygekealkdvnleikknkvtaliGpsGcGkstllrsl.nrlndlveevrieGkvllegkdiy 71 
                ++l yg k  l++ ++++ + +  +l+G   cGk+tl+rs+ n   +  ++v+ + k ++ + di 
  MMETSP1061-20121228|243_1 415 FTLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIaNNQVEGFPDVT-QVKTVFVEADIQ 479
                7899************************************9433333333333.334445555665 PP

  == domain 2    score: 42.8 bits;  conditional E-value: 1.2e-13
  TIGR00972 120 iveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarv 209
                 ++e L  +++ ++ k k +++  +LsGG + +l++ara+  + ++lLlDePt  LD i ++ ++  +++L  ++t ++v h+    + +
  MMETSP1061-20121228|243_1 506 KIREVLGTVGFTEDGKAKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP-NVTCIMVSHDTGLLNDC 594
                577889999999***********************************************************6.6999*****97766555 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 0.00016
  TIGR00972   2 levknlklfygeke..alkdvnleikknkvtaliGpsGcGkstllrsl 47 
                +++ n +++y  ++  +l +++++++  + +a iG  G+Gkst+++ l
  MMETSP1061-20121228|243_1 655 MKMANCTFTYPGNTkpTLFNITVQVSLSSRVACIGENGAGKSTMIKLL 702
                67788888885443349***************************9976 PP

  == domain 4    score: 44.1 bits;  conditional E-value: 4.9e-14
  TIGR00972 118 deiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekpke 236
                 + ve+ L++ +l  e  ++ +    +LsGGq+ +++ia a+ ++P++++lDePt  LD ++   + + i+       ++i+ hn ++ + +  +t ++  G+l  +g+++ ++++ ++
  MMETSP1061-20121228|243_1 862 TKNVESHLNGCGLAPEFGTHYRM--SALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDG--GVIIISHNNEFVSTLCPETWVMDAGHLETKGDADWMLKQDTK 976
                67788899999999888776555..569******************************************99865..799*****************************9999987655 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.1   1.5e-14     1e-12       3     189 ..     419     593 ..     418     603 .. 0.83
   2 !   19.2   0.0   1.9e-06   0.00013      11      50 ..     674     713 ..     666     716 .. 0.89
   3 !   45.2   0.1   2.2e-14   1.5e-12     121     262 ..     883    1023 ..     847    1036 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 1.5e-14
  TIGR01188   3 ygefkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaa....dkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadk 189
                yg    +++ ++k+ +g  +glLG n  GKtt+++ ++        + +v G+  v + ++v  +  + ++    +++L+  + + +  ++  l+  +  ++++e+l +v ++e      d+ v t+sgG r +l la++++++ ++l LDEPt  LD+   + ++ ++++l   +vt ++ +h+    + 
  MMETSP1061-20121228|243_1 419 YGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA--------NNQVEGFPDVTQVKTVFVEADIQGE----QSHLSCVDYVAVDPAIAALN--IGTSKIREVLGTVGFTEDGkakpDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP--NVTCIMVSHDTGLLND 593
                56566678889*********************998665........689****878888777666666665....56899*******99999886..67789*********998651122678*********************************************99886..5888888888655555 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.9e-06
  TIGR01188  11 gvnlkveegevfglLGPnGAGKtttikmLttllkPdsGta 50 
                +++++v+  + ++ +G nGAGK+t+ik+L + + P++G +
  MMETSP1061-20121228|243_1 674 NITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                67888888999999***********************975 PP

  == domain 3    score: 45.2 bits;  conditional E-value: 2.2e-14
  TIGR01188  121 kvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpe.eLKe..rvgkevveverrdikelkkevsllaaelteslleleavevdsdkvklkv 262 
                 ++  +sgG++ ++ +aa++  qP+++ LDEPt  LD ++   + + ie +   +  +++ +h+ e + +l+ +  ++d G++  ++ ++  LK+  +++++    e  d+   k+ev++  ++l +++ e + +++ + k+k  +
  MMETSP1061-20121228|243_1  883 RMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF---DGGVIIISHNNEFVSTLCPETWVMDAGHLETKGDADwMLKQdtKIDDQQQLQEMTDAAGNKVEVQTGPKKLSKKE-EKALIKKIKKKIKEGI 1023
                 56789*******************************88877777777766...6689999**********************9887776368876677777777778888888888888888887776.4444444444444333 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   7.5e-05    0.0052       7      39 ..     424     456 ..     419     460 .. 0.88
   2 !   31.1   0.0   4.7e-10   3.3e-08      86     189 ..     491     590 ..     465     591 .. 0.73
   3 !   27.4   0.0   6.3e-09   4.4e-07       7      51 ..     671     715 ..     664     729 .. 0.88
   4 !   33.7   0.0   7.1e-11     5e-09     124     185 ..     883     941 ..     862     946 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.5e-05
  TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhln 39 
                 l++ ++++ rg+  +llG n +Gk+tl++ ++
  MMETSP1061-20121228|243_1 424 LLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA 456
                578899***********************9875 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 4.7e-10
  TIGR01166  86 vdedvafgplnlGlseaeverrvrealaavdisg....leerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdl 189
                v  d a + ln+G s      ++re l +v+ ++      ++++++lsgG + ++a+a a+  ++d+llldePt  ld   +  + + l+ l +   t ++ +hd  l
  MMETSP1061-20121228|243_1 491 VAVDPAIAALNIGTS------KIREVLGTVGFTEdgkaKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPN--VTCIMVSHDTGL 590
                445556666666654......5666666666543111144667889*********************************************986..689999999876 PP

  == domain 3    score: 27.4 bits;  conditional E-value: 6.3e-09
  TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvll 51 
                 l ++ ++v+ ++++a +G+nGaGkst+++ l G + P++G v  
  MMETSP1061-20121228|243_1 671 TLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWK 715
                6788999**********************************9965 PP

  == domain 4    score: 33.7 bits;  conditional E-value: 7.1e-11
  TIGR01166 124 pthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                 ++ lsgG+k +v ia+a+ ++p++++ldePt  ld +    l+++++ +   G  ++i +h
  MMETSP1061-20121228|243_1 883 RMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFD--GGVIII-SH 941
                5789**********************************9999999998763..444444.44 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   1.7e-15   1.2e-13     321     529 ..     396     587 ..     378     588 .. 0.76
   2 !   30.6   0.0   4.1e-10   2.8e-08     328     393 ..     648     714 ..     630     732 .. 0.88
   3 !   22.4   0.0   1.3e-07   8.8e-06     470     528 ..     885     941 ..     868     943 .. 0.82

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 1.7e-15
  TIGR02868 321 sapaaeaaasekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdtt.vreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                + p + +  +++ +l+    + +y ++   l++ +++l  G++  ++G   +GK+tL+  +a       ++vt   v+        v   + +  ++ Hl   + v     +a+ +     + ++L  vg  +  +a       k  +  ++lSGG r +lalARa+l++a++llLDEPt hLD+    + +++ l+ + + t ++v+h+
  MMETSP1061-20121228|243_1 396 EIPDDDDDDDDAEELCNCTFTLAYGTK-ILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANNQVEGFPDVT--QVKT-------VFVEADIQGEQSHLSCVDyVAVDPAIAALNIGTSKIREVLGTVGFTEDGKA-------KPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVIN-VAWVKTYLNSLPNVTCIMVSHD 587
                455555555566666766777777665.579999999999999999999999999999888776554445554..3222.......333445667899997654377788899999999999999999999988888.......44566789********************************976.5677888889999999999997 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 4.1e-10
  TIGR02868 328 aasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevt 393
                 +++k+ +++++ ++ ypg+ +  l +++++++  +rva +G  GaGKst+++ll+g ++p++G+v 
  MMETSP1061-20121228|243_1 648 KSKGKALMKMANCTFTYPGNTKpTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVW 714
                55577889999*********999*****************************************996 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 1.3e-07
  TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvth 528
                ++lSGG++ ++++A a+  +  +++LDEPt  LD e    l +++   + g  v++++h
  MMETSP1061-20121228|243_1 885 SALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDGG--VIIISH 941
                68********************************99877777766544433..555555 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0063      0.44     318     365 ..     409     456 ..     376     465 .. 0.75
   2 !   27.9   0.0   2.6e-09   1.8e-07     453     534 ..     529     609 ..     519     618 .. 0.82
   3 !   27.3   0.0     4e-09   2.8e-07     316     375 ..     654     713 ..     647     721 .. 0.93
   4 !   39.9   0.0   5.9e-13   4.1e-11     453     542 ..     885     972 ..     879     973 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0063
  TIGR01842 318 evenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllv 365
                e+ n +++ + + k  l++ +++l  G   +++G    Gk++L+r + 
  MMETSP1061-20121228|243_1 409 ELCNCTFTLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA 456
                455677888899999******************************986 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 2.6e-09
  TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpslle.lvdkilvlkdGalkaf 534
                ++LsgG r ++aLaRa+  +  +++LDeP   LD    + + + l++l   ++t ++++h + ll+ +  +il +++ +l++f
  MMETSP1061-20121228|243_1 529 STLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSL--PNVTCIMVSHDTGLLNdCCTNILKFENLKLRTF 609
                79********************************98766666667766..5789999***99999646778887777666665 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 4e-09
  TIGR01842 316 elevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsv 375
                 +++ n +++ p++ k+tl +i+++++  + +a iG  g+Gks++ +llvG + p++G v
  MMETSP1061-20121228|243_1 654 LMKMANCTFTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                57788999**************************************************98 PP

  == domain 4    score: 39.9 bits;  conditional E-value: 5.9e-13
  TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpslle.lvdkilvlkdGalkafGereevlk 542
                +aLsgGq+ ++ +a a++ +P++v+LDeP   LD e    la+a+++       v++i+h  + ++ l  +  v+++G+l++ G+++ +lk
  MMETSP1061-20121228|243_1 885 SALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF---DGGVIIISHNNEFVStLCPETWVMDAGHLETKGDADWMLK 972
                68******************************************9887...578999***999776167899*************999987 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   5.9e-11   4.1e-09     116     213 ..     504     603 ..     409     606 .. 0.84
   2 !   34.9   0.0   3.8e-11   2.7e-09       2      62 ..     655     715 ..     654     729 .. 0.94
   3 !   30.2   0.0   1.1e-09   7.5e-08     117     216 .]     863     961 ..     838     961 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 5.9e-11
  TIGR00960 116 eervsaalekvGlkdkakalPv....qlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlsk 213
                  +++++l +vG+++  ka P+    +lsgG + ++a+ara++++  +ll dePt  ld      +   l+++    +t ++ +hd+ l+++    +l++++
  MMETSP1061-20121228|243_1 504 TSKIREVLGTVGFTEDGKAKPDhavsTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP--NVTCIMVSHDTGLLNDCCTNILKFEN 603
                4578899******98888888533337********************************999888888888876..589**************999999876 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 3.8e-11
  TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirv 62 
                +k+ + + +y+g ++++l n+tv+++  + v  +G+ GaGkst++kl++g   p++G+++ 
  MMETSP1061-20121228|243_1 655 MKMANCTFTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWK 715
                6788999****************************************************95 PP

  == domain 3    score: 30.2 bits;  conditional E-value: 1.1e-09
  TIGR00960 117 ervsaalekvGlkdk..akalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGkl 216
                + v+  l+  Gl      ++    lsgG++ +v ia a+  +P++++ dePt  ld+e   ++ + +e+++     v++ +h++++v++    + +++ G+l
  MMETSP1061-20121228|243_1 863 KNVESHLNGCGLAPEfgTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDG---GVIIISHNNEFVSTLCPETWVMDAGHL 961
                456667777787654226778889**********************************99999999998873...689999******999888888888876 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.1   3.4e-16   2.4e-14       9     182 ..     418     586 ..     413     606 .. 0.81
   2 !   20.5   0.0   9.3e-07   6.5e-05      16      58 ..     672     714 ..     659     730 .. 0.90
   3 !   26.1   0.0   1.8e-08   1.3e-06     100     205 ..     860     964 ..     846     982 .. 0.80

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 3.4e-16
  TIGR03740   9 kfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGsliesPalyenltarenlkvrtll..lglpesrieevlkivdlentekkk....akqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilssh 182
                +++ + +++n ++k+ + + ygllG n +Gk+tl++ ++    + +G       ++t  ++k + +  +      +l+  + + v   +  l++ +s+i evl +v++++++k k    ++ +s G + +l +a a+l++ ++l+ldePtn ld + +  ++  ++s+p+  +t i+ sh
  MMETSP1061-20121228|243_1 418 AYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANN--QVEGF---P--DVT--QVKTVFVEADIQGEQSHLSCVDYVAVDPAIaaLNIGTSKIREVLGTVGFTEDGKAKpdhaVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPN--VTCIMVSH 586
                6899999****************************998753..33331...1..222..33344444444556789******99986651166789***************99763443788999*******************************************97..67777777 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 9.3e-07
  TIGR03740  16 vnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeil 58 
                + n++++v  +s  + +G nGaGkst++kll+G + +++G++ 
  MMETSP1061-20121228|243_1 672 LFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVW 714
                66899999999999*************************9975 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 1.8e-08
  TIGR03740 100 lpesrieevlkivdlent..ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkye 205
                l+++++e+ l+  +l  +  +  + + +s G k ++ ia a+  +P+++ildePtn ld   +  l + i++f      vi+ sh    v++l+ +  ++  G+l+ +
  MMETSP1061-20121228|243_1 860 LSTKNVESHLNGCGLAPEfgTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDG---GVIIISHNNEFVSTLCPETWVMDAGHLETK 964
                556666666666666544114557889999*****************************************9974...466778888888888888888888877665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.021       1.5      10      51 ..     418     458 ..     409     476 .. 0.83
   2 !   36.6   0.0   1.1e-11   7.9e-10     115     211 ..     504     602 ..     483     605 .. 0.84
   3 !   26.6   0.0   1.3e-08   9.1e-07       2      61 ..     655     715 ..     654     736 .. 0.87
   4 !   29.2   0.0   2.1e-09   1.4e-07     114     208 ..     861     954 ..     840     960 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.021
  TIGR02673  10 eyaagveaLkdvslkiekgeflfltGasGaGkttllklllga 51 
                +y +    L++ ++k+ +g  + l G    Gkttl++ + + 
  MMETSP1061-20121228|243_1 418 AYGT-KILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANN 458
                4533.3469****************************98765 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 1.1e-11
  TIGR02673 115 qkrveevlelvgled....kakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlele 211
                +++++evl +vg+++    k ++  ++lsgG + + a+aRa++++ ++ll DePt  lD  + + + + l++l +  +t i+++hd+ l++   +++l++e
  MMETSP1061-20121228|243_1 504 TSKIREVLGTVGFTEdgkaKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPN--VTCIMVSHDTGLLNDCCTNILKFE 602
                468899999999987222244555678***************************************999999875..89**********999888877765 PP

  == domain 3    score: 26.6 bits;  conditional E-value: 1.3e-08
  TIGR02673   2 ielekvskeyaagve.aLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevev 61 
                +++ + +++y+++++ +L +++++++ ++ +  +G+ GaGk+t++kll+g   p++G+v+ 
  MMETSP1061-20121228|243_1 655 MKMANCTFTYPGNTKpTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWK 715
                689999****9765439*****************************************975 PP

  == domain 4    score: 29.2 bits;  conditional E-value: 2.1e-09
  TIGR02673 114 iqkrveevlelvgledka..kalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvl 208
                 +k+ve+ l+  gl+     +   ++lsgG + +v ia a+  +P++++ DePt  lD e    + + ++++      vi+ +h++e+v++    + 
  MMETSP1061-20121228|243_1 861 STKNVESHLNGCGLAPEFgtHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF---DGGVIIISHNNEFVSTLCPETW 954
                56789999999999887511455789********************************98877766666555...4568889999999987755555 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.1e-06   0.00022       6      49 ..     415     458 ..     410     492 .. 0.84
   2 !   24.3   0.0   5.8e-08     4e-06     131     188 ..     530     584 ..     522     607 .. 0.75
   3 !   21.2   0.0     5e-07   3.5e-05      14      57 ..     670     713 ..     655     728 .. 0.84
   4 !   34.0   0.0   6.3e-11   4.4e-09     128     221 ..     883     972 ..     877     980 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.1e-06
  TIGR03410   6 levaYgesevlrdvslevekgevvavlGrngvGkttllkalvgl 49 
                 ++aYg+  +l++ ++++ +g+   +lG n  Gkttl++++   
  MMETSP1061-20121228|243_1 415 FTLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANN 458
                5789************************************9754 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 5.8e-08
  TIGR03410 131 dLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillv 188
                 LsGG + +la+aRa++++  +llLDePt+ +    ++ +++ +++l    +++ ++v
  MMETSP1061-20121228|243_1 530 TLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSL---PNVTCIMV 584
                79***************************988654444444444443...34455555 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 5e-07
  TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGei 57 
                  l +++++v+ ++ va +G ng+Gk+t++k lvg +  ++G +
  MMETSP1061-20121228|243_1 670 PTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                47899*************************************98 PP

  == domain 4    score: 34.0 bits;  conditional E-value: 6.3e-11
  TIGR03410 128 rgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeelde 221
                r   LsGGq+ ++ ia a+ ++P++++LDePt+ +    +  ++++i++       +++++ ++ +f+ +l  + +v++ G++ ++g+++ + +
  MMETSP1061-20121228|243_1 883 RMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFD----GGVIIISHNNEFVSTLCPETWVMDAGHLETKGDADWMLK 972
                5568*********************************99999999998765....4899999***********************999887654 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00072      0.05      11      50 ..     419     457 ..     412     485 .. 0.79
   2 !   34.7   0.0   3.7e-11   2.6e-09     140     221 ..     525     603 ..     504     617 .. 0.83
   3 !   21.0   0.0   5.7e-07     4e-05       2      62 ..     655     716 ..     654     742 .. 0.83
   4 !   28.8   0.0   2.3e-09   1.6e-07     139     182 ..     880     923 ..     844     974 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00072
  TIGR02315  11 ypngkqalknvnleikkGelvaviGlsGaGkstllrsinr 50 
                y+  k  l+n+++++ +G   +++G    Gk+tl+rsi +
  MMETSP1061-20121228|243_1 419 YG-TKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIAN 457
                66.67889*****************************954 PP

  == domain 2    score: 34.7 bits;  conditional E-value: 3.7e-11
  TIGR02315 140 akradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglka 221
                ++ +++LsGG + ++a+aRa++q+++++l DEP+  LD  +   v  +l ++    ++t+i+  H+  l +  ++ i+ +++
  MMETSP1061-20121228|243_1 525 DHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSL---PNVTCIMVSHDTGLLNDCCTNILKFEN 603
                345789***************************************9998777...578899999999988888888877665 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 5.7e-07
  TIGR02315   2 levenlskvypngkq.alknvnleikkGelvaviGlsGaGkstllrsinrlveissgsille 62 
                +++ n + +yp++++ +l n+ ++++    va iG+ GaGkst+++ + + + +++g++  +
  MMETSP1061-20121228|243_1 655 MKMANCTFTYPGNTKpTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWKH 716
                67788889998665438*******************************99999999998754 PP

  == domain 4    score: 28.8 bits;  conditional E-value: 2.3e-09
  TIGR02315 139 aakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpkssk 182
                 + r+++LsGGq+ +v ia a+  qp++++ DEP+  LD +s  
  MMETSP1061-20121228|243_1 880 THYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLG 923
                46799**********************************98754 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0037      0.26     478     526 ..     408     456 ..     376     462 .. 0.85
   2 !   31.6   0.0   1.5e-10   1.1e-08     614     682 ..     529     599 ..     518     621 .. 0.88
   3 !   28.7   0.0   1.2e-09   8.5e-08     475     537 ..     652     714 ..     603     731 .. 0.86
   4 !   26.7   0.0   4.7e-09   3.3e-07     615     702 ..     886     974 ..     881     979 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0037
  TIGR03796 478 velrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklva 526
                 el n tf+ +   + l+++ +++l  G++  l Gg  +Gk t+ + +a
  MMETSP1061-20121228|243_1 408 EELCNCTFTLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA 456
                589999**************************************99886 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 1.5e-10
  TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr.RgctciivaHRLstiRdc.deii 682
                + lsGG r +l +ARa+ +n  iL+lDE t  LD      ++  l    ++tci+v+H    + dc  +i+
  MMETSP1061-20121228|243_1 529 STLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSlPNVTCIMVSHDTGLLNDCcTNIL 599
                679******************************************97369*********999999724555 PP

  == domain 3    score: 28.7 bits;  conditional E-value: 1.2e-09
  TIGR03796 475 sGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeil 537
                +  ++++n tf+y    +p + +++++++  +rvA +G  G+Gkst+ kl+ G  +p +G++ 
  MMETSP1061-20121228|243_1 652 KALMKMANCTFTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVW 714
                4567999*****************************************************996 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 4.7e-09
  TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRd.cdeiivlerGkvverGtHeellake 702
                 lsGGq+ ++ iA a+  +P i+ilDE t  LD e    + +++      +ii++H    +   c e  v++ G++  +G  + +l+++
  MMETSP1061-20121228|243_1 886 ALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDGGVIIISHNNEFVSTlCPETWVMDAGHLETKGDADWMLKQD 974
                69******************************************************966554339***************998888776 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.57        39      19      52 ..     423     456 ..     410     471 .. 0.87
   2 !   41.6   0.0     3e-13   2.1e-11     132     219 ..     521     606 ..     495     608 .. 0.83
   3 !   19.3   0.0     2e-06   0.00014      17      63 ..     668     714 ..     654     724 .. 0.85
   4 !   31.6   0.0   3.3e-10   2.3e-08     136     218 ..     881     960 ..     855     963 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.57
  TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllhllg 52 
                 +l++ ++++ +g   +++G    Gk+tl+  ++
  MMETSP1061-20121228|243_1 423 ILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA 456
                5689*************************97665 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 3e-13
  TIGR02211 132 ekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelak.kldrvlelkdgkl 219
                + + ++  s lsGG r + a+ara++++ +++l dePt +ld  +   +    + ln+  n++ ++v+hd+ l + +  + l++++ kl
  MMETSP1061-20121228|243_1 521 KAKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVK---TYLNSLPNVTCIMVSHDTGLLNdCCTNILKFENLKL 606
                35678899**********************************99988776...56788899**********987526677788877666 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 2e-06
  TIGR02211  17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevl 63 
                +  +l ++ ++++ +  va +G+ G+Gkst++ ll g   p +G+v 
  MMETSP1061-20121228|243_1 668 TKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVW 714
                4557889*************************************985 PP

  == domain 4    score: 31.6 bits;  conditional E-value: 3.3e-10
  TIGR02211 136 nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl.drvlelkdgk 218
                +++ s+lsGG++ +v ia a+  +P++v+ dePt  ld+++   + + ++      + ++++++h++e++  l +++  +  g+
  MMETSP1061-20121228|243_1 881 HYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIET----FDGGVIIISHNNEFVSTLcPETWVMDAGH 960
                5789***********************************987776666554....55689999999999876525556666655 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   7.2e-05     0.005       7      47 ..     418     458 ..     414     472 .. 0.90
   2 !   43.2   0.0   9.3e-14   6.4e-12     114     200 ..     506     594 ..     500     600 .. 0.82
   3 !   11.1   0.0   0.00062     0.043      13      56 ..     671     714 ..     662     804 .. 0.80
   4 !   25.1   0.0   3.2e-08   2.2e-06     114     196 ..     864     945 ..     844     953 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.2e-05
  TIGR03608   7 kfkdkeilkklslkiekGelvaivGesGsGKstlLnilgll 47 
                 +++k +l+++++k+ +G+ + ++G   +GK+tl+  +++ 
  MMETSP1061-20121228|243_1 418 AYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANN 458
                68999******************************999875 PP

  == domain 2    score: 43.2 bits;  conditional E-value: 9.3e-14
  TIGR03608 114 kkkevlekvglek....klkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaeka 200
                k+ evl +vg+++    k ++ + +lsgG + ++alar++l++++++l DEPt  LD  n + v ++l++l   + t i+v Hd+ + + +
  MMETSP1061-20121228|243_1 506 KIREVLGTVGFTEdgkaKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP--NVTCIMVSHDTGLLNDC 594
                566777777774401113446799*********************************************995..789*******9988776 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.00062
  TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvi 56 
                 l ++ ++++  + va +Ge G+GKst++ +l     +++g+v 
  MMETSP1061-20121228|243_1 671 TLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVW 714
                56678888899999***************998666566666665 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 3.2e-08
  TIGR03608 114 kkkevlekvgl..ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpev 196
                +++++l+  gl  e  ++ ++  lsgG+k +v +a ++  ++++++ DEPt  LD+++   + + ++     +  +ii+ H++e 
  MMETSP1061-20121228|243_1 864 NVESHLNGCGLapEFGTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF---DGGVIIISHNNEF 945
                55566666777444456778999********************************99987777666554...3345666676654 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.3   2.1e-13   1.4e-11       8     194 ..     416     592 ..     410     597 .. 0.84
   2 !   18.8   0.0   2.6e-06   0.00018      13      58 ..     668     713 ..     654     720 .. 0.85
   3 !   28.4   0.0   3.1e-09   2.2e-07      99     221 ..     850     972 ..     841     987 .. 0.72

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 2.1e-13
  TIGR03864   8 sfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsrae.aeerieealarlglaeraeek....vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvd 194
                + ayg++  l++ ++++ +g+   LLG n  Gk+tL+  ++          +v G+         ++++  vf +  +  + s    + y a    ++  +  +++i+e+l  +g++e  ++k    v +L+GG r ++ +ara+l + ++LLlDe+t  LD+   a + +++++l + + + v   t l++
  MMETSP1061-20121228|243_1 416 TLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIAN--------NQVEGFPD-------VTQVKTVFVEADIQGEQSHLSCVDYVAVDPAIAALNiGTSKIREVLGTVGFTEDGKAKpdhaVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPNVTCIMVSHDTGLLN 592
                679*********************************986653........34566643.......45666789999999999999999999988888875526899********9988655444444*************************************9999999999999888888877777765 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.6e-06
  TIGR03864  13 krralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegei 58 
                ++ +l +++++v+ ++ va +G nGaGkst+++ll + ++ +eg++
  MMETSP1061-20121228|243_1 668 TKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                567889999999999************************9999997 PP

  == domain 3    score: 28.4 bits;  conditional E-value: 3.1e-09
  TIGR03864  99 aaLhGls.raeaeerieealarlglaer..aeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveae.drlvvlhkGkvlaqGaaaelaa 221
                a+L G+  +  +++++e++l+  gla    ++ ++ +L+GG++ +v ia a+  +P++++lDe+t  LD es   l +++++       +v+   h  + v++   +  v++ G++ ++G a+ + +
  MMETSP1061-20121228|243_1 850 AQLAGMFvKPLSTKNVESHLNGCGLAPEfgTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFD----GGVIIISHNNEFVSTLcPETWVMDAGHLETKGDADWMLK 972
                666676414457789999999999998722456789**********************************99988888877654....234444555555544314556677777777776665554 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.09       6.3     455     497 ..     411     453 ..     400     457 .. 0.92
   2 !   28.2   0.0     2e-09   1.4e-07     585     650 ..     527     593 ..     494     620 .. 0.84
   3 !   29.8   0.0   6.9e-10   4.8e-08     452     510 ..     655     713 ..     646     716 .. 0.94
   4 !   32.7   0.0     9e-11   6.3e-09     587     674 ..     885     973 ..     882     980 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.09
  TIGR03797 455 drvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllr 497
                 + tF+ +  ++  L++  +k   G   ++ G   +GK tl+r
  MMETSP1061-20121228|243_1 411 CNCTFTLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMR 453
                57789999999999****************************9 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 2e-09
  TIGR03797 585 gggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl.kvtRiviAHRLSTirn 650
                + +tlSGG r +l +Ara+ +   ill+DE T  LD    a V   l+ l +vt i++ H    +++
  MMETSP1061-20121228|243_1 527 AVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLpNVTCIMVSHDTGLLND 593
                5689*********************************************978********7665555 PP

  == domain 3    score: 29.8 bits;  conditional E-value: 6.9e-10
  TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsv 510
                +++ + tF+Y  +++ +L +++++++    va +G+ G+GKSt+++lL+g   P++G v
  MMETSP1061-20121228|243_1 655 MKMANCTFTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                578899***************************************************98 PP

  == domain 4    score: 32.7 bits;  conditional E-value: 9e-11
  TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirn.adrilvleeGrvveqGsyeeLlak 674
                ++lSGGQ+ +++iA a+  +P+i+++DE T  LD ++     +++e++    i+i H    +   +    v+++G++  +G  + +l++
  MMETSP1061-20121228|243_1 885 SALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDGGVIIISHNNEFVSTlCPETWVMDAGHLETKGDADWMLKQ 973
                589******************************************************9877764499**************98877665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00052     0.036      19      57 ..     417     455 ..     408     461 .. 0.88
   2 !   27.2   0.0   7.7e-09   5.3e-07     128     228 ..     505     605 ..     500     628 .. 0.85
   3 !   23.0   0.0   1.4e-07     1e-05      22      68 ..     667     713 ..     655     727 .. 0.90
   4 !   30.2   0.0   9.2e-10   6.4e-08     136     231 ..     871     962 ..     858     986 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00052
  TIGR02769  19 gkkqrkavldnvslsleeGetvallGrsGaGkstlarll 57 
                 + + k +l+n +++l +G   +llG   +Gk+tl r +
  MMETSP1061-20121228|243_1 417 LAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSI 455
                56678889***************************9965 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 7.7e-09
  TIGR02769 128 ariaellelvelrsevldk...lPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGq 228
                 +i e+l +v++ ++   k     + lsGG   ++++ara+  +  +++lde    ld+++ a +   l+ l +   +++++++hd  l +  + ++l +++ +
  MMETSP1061-20121228|243_1 505 SKIREVLGTVGFTEDGKAKpdhAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPN---VTCIMVSHDTGLLNDCCTNILKFENLK 605
                688999999999887655411156789**************************************999999975...89****************999888765 PP

  == domain 3    score: 23.0 bits;  conditional E-value: 1.4e-07
  TIGR02769  22 qrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGev 68 
                + k+ l n+ +++     va +G+ GaGkst+ +ll+G   P++G+v
  MMETSP1061-20121228|243_1 667 NTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                5678899**************************************99 PP

  == domain 4    score: 30.2 bits;  conditional E-value: 9.2e-10
  TIGR02769 136 lvelrsevldkl.PrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqive 231
                  +l +e   ++  + lsGGq  ++ ia a+ ++P++++lde    ld+    ++ +      + f   +++i+h+ + v +++ +  v+d G++ e
  MMETSP1061-20121228|243_1 871 GCGLAPEFGTHYrMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAH----AIETFDGGVIIISHNNEFVSTLCPETWVMDAGHL-E 962
                55666665444414679*******************************976555444....4455666789**********************97.3 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.8e-11   1.3e-09     476     534 ..     530     587 ..     523     618 .. 0.87
   2 !   27.1   0.0     5e-09   3.5e-07     330     397 ..     647     713 ..     622     717 .. 0.88
   3 !   29.4   0.0   9.9e-10   6.9e-08     474     564 ..     884     973 ..     873     984 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.8e-11
  TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahr 534
                tLsGG + ++a+ara+l++a iLLLde t+ Ld  +   v++ l++l  + t ++++h 
  MMETSP1061-20121228|243_1 530 TLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP-NVTCIMVSHD 587
                8*******************************************9986.4677777775 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 5e-09
  TIGR02204 330 lpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGai 397
                +  k ++ +++ + +f+yP  + +++l ++ ++v    +va +G  GaGkst+++ll     Pq+G +
  MMETSP1061-20121228|243_1 647 VKSKGKALMKMANCTFTYPGNT-KPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                556677889999********99.99****************************************987 PP

  == domain 3    score: 29.4 bits;  conditional E-value: 9.9e-10
  TIGR02204 474 gvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlk.adrivvldkGriveqGthaeLiak 564
                   LsGGqk ++ ia a+  +  i++Lde t+ Ld es   + +a+e+       ++i+h    v   +    v+d G++  +G  + ++++
  MMETSP1061-20121228|243_1 884 MSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDG--GVIIISHNNEFVSTlCPETWVMDAGHLETKGDADWMLKQ 973
                568********************************************9855..589****999886548999********999998877776 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0022      0.16       9      49 ..     416     456 ..     411     478 .. 0.90
   2 !   28.8   0.0   2.6e-09   1.8e-07     110     191 ..     503     587 ..     483     632 .. 0.79
   3 !   15.5   0.0   2.7e-05    0.0019      17      59 ..     671     713 ..     655     732 .. 0.86
   4 !   36.2   0.1   1.4e-11   9.9e-10     109     224 ..     860     975 ..     847    1026 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0022
  TIGR03522   9 sklygkqkaldevsfeaekGeivGflGPnGaGkstlmkilt 49 
                +  yg++  l +  ++  +G+  G+lG n  Gk+tlm+ ++
  MMETSP1061-20121228|243_1 416 TLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA 456
                5689*********************************9765 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 2.6e-09
  TIGR03522 110 lkkrveelielvGlkaeqhkk....igalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthi 191
                  ++++e++  vG++++   k    ++ ls G+r +  la+a+l + ++l+ldePt  ld  ++  ++  ++++ +   +++s h 
  MMETSP1061-20121228|243_1 503 GTSKIREVLGTVGFTEDGKAKpdhaVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPNVTCIMVS-HD 587
                5689999******99887665455599*********************************99999999999998876555554.54 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 2.7e-05
  TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsv 59 
                +l +++ ++   + v  +G nGaGkst++k+l g ++++ G v
  MMETSP1061-20121228|243_1 671 TLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                56677888888888999**********************9987 PP

  == domain 4    score: 36.2 bits;  conditional E-value: 1.4e-11
  TIGR03522 109 klkkrveelielvGlkae..qhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaek 224
                +  k+ve  ++ +Gl +e  +h +++als G + +v +a+a+  +P+++ildePt  ld + l  + + i++   d  vi+ +h    v +lc +  +++ G++ ++ + + + ++++
  MMETSP1061-20121228|243_1 860 LSTKNVESHLNGCGLAPEfgTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF--DGGVIIISHNNEFVSTLCPETWVMDAGHLETKGDADWMLKQDT 975
                456889***********9667**********************************************999976..78899999*******************9987766665544443 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   7.1e-11   4.9e-09     469     527 ..     529     586 ..     523     595 .. 0.90
   2 !   27.5   0.0   3.3e-09   2.3e-07     329     390 ..     652     713 ..     642     717 .. 0.91
   3 !   26.9   0.0   4.9e-09   3.4e-07     468     559 ..     884     974 ..     863     986 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 7.1e-11
  TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviah 527
                s LsGG R +la+aRa+l++a iL+LDe t  LD      v+  L+ l  + t ++++h
  MMETSP1061-20121228|243_1 529 STLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSL-PNVTCIMVSH 586
                78********************************99999999999987.6788888888 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 3.3e-09
  TIGR02203 329 rGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGei 390
                +  +++ n tf+ypg+ +++l +i ++v+   +va +G  G+Gkst+++ll   + p++G++
  MMETSP1061-20121228|243_1 652 KALMKMANCTFTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                4467899********************************************99999999986 PP

  == domain 3    score: 26.9 bits;  conditional E-value: 4.9e-09
  TIGR02203 468 gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek.aDrivvlddGkiverGtheeLlarn 559
                 s LsGGq+ ++ ia a+  +  i+iLDe t  LD es   + +a+e +  g   ++i+h    +     +  v+d+G++  +G    +l+++
  MMETSP1061-20121228|243_1 884 MSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDGG--VIIISHNNEFVSTlCPETWVMDAGHLETKGDADWMLKQD 974
                589********************************************98655..799999977776536789999999998888877777766 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.075       5.2       7      45 ..     416     454 ..     410     469 .. 0.81
   2 !   33.9   0.0     4e-11   2.8e-09     400     497 ..     504     597 ..     496     616 .. 0.85
   3 !   11.5   0.0   0.00025     0.017     302     342 ..     674     714 ..     662     721 .. 0.87
   4 !   35.3   0.0   1.5e-11     1e-09     426     527 ..     885     982 ..     879     985 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.075
  TIGR03269   7 tkkfdglevlknisleleeGevlGilGksGaGksvllhl 45 
                t ++  +  l+n +++l  G+  G+lG   +Gk+ l++ 
  MMETSP1061-20121228|243_1 416 TLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRS 454
                566777788899999999999999999999999999875 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 4e-11
  TIGR03269 400 krkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdr 497
                + k   vl +vGf+e+  k   d+  ++ls G r ++ala+ ++++  i++ldept  +d i    v+   l++    + t ++vshd  ++++ c  
  MMETSP1061-20121228|243_1 504 TSKIREVLGTVGFTEDG-KAKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTY-LNSLP--NVTCIMVSHDTGLLNDCCTN 597
                566678999****9984.34469999**********************************9988887765.55544..679**************976 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00025
  TIGR03269 302 nvslevkekeifGlvGtsGaGkttlskilaGvleptsGeve 342
                n++++v  +     +G  GaGk+t+ k+l+G + p +G+v+
  MMETSP1061-20121228|243_1 674 NITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVW 714
                566677777777889***********************997 PP

  == domain 4    score: 35.3 bits;  conditional E-value: 1.5e-11
  TIGR03269 426 delseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeiveelteeekekm 527
                + ls G++ +v +a  +  +p+ivildept  +d  +       + +a e ++   +i+sh+ +fv ++c  + +m  G++   Gd++ ++++ t+ + ++ 
  MMETSP1061-20121228|243_1 885 SALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRES----LGGLAHAIETFDGGVIIISHNNEFVSTLCPETWVMDAGHLETKGDADWMLKQDTKIDDQQQ 982
                679******************************9654....45666777899************************************99999887665554 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0       0.1       7.2     459     503 ..     411     455 ..     405     470 .. 0.87
   2 !   28.9   0.0   1.1e-09   7.6e-08     592     669 ..     529     606 ..     519     627 .. 0.85
   3 !   18.2   0.0   1.9e-06   0.00013     455     514 ..     654     713 ..     642     718 .. 0.92
   4 !   33.9   0.0   3.4e-11   2.4e-09     592     686 ..     885     978 ..     877     985 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.1
  TIGR01846 459 enirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkll 503
                 n +f  +  +  +l+n ++++  G+  G+ G   +Gk+tl + +
  MMETSP1061-20121228|243_1 411 CNCTFTLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSI 455
                56778888888899***************************9866 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 1.1e-09
  TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraa.drilvlekGki 669
                ++lsGG r ++alara+++n  il+lde t  ld    a ++  l+++  + t i+++h    + ++  +il +e+ k+
  MMETSP1061-20121228|243_1 529 STLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP-NVTCIMVSHDTGLLNDCcTNILKFENLKL 606
                58*******************************************9986.6899*****99999875278888777655 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 1.9e-06
  TIGR01846 455 aiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrv 514
                 +++ n +f y  ++ + l n+++++     +  +G+ G+Gkst+ kll     P++G v
  MMETSP1061-20121228|243_1 654 LMKMANCTFTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                478899********************************************9999**9987 PP

  == domain 4    score: 33.9 bits;  conditional E-value: 3.4e-11
  TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilvlekGkivesGkheellakeglya 686
                +alsGGq+ ++ +a a+  +P+i+ilde t  ld es   + + ++       viii+h  + v + + +  v++ G++  +G  + +l+++++  
  MMETSP1061-20121228|243_1 885 SALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFD--GGVIIISHNNEFVSTlCPETWVMDAGHLETKGDADWMLKQDTKID 978
                68***************************************99999775..469******99997559*********************9987765 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.79        55      26      44 ..     438     456 ..     418     462 .. 0.85
   2 !   34.4   0.0   4.3e-11     3e-09     128     212 ..     527     608 ..     467     632 .. 0.87
   3 !   14.6   0.0   4.6e-05    0.0032      12      54 ..     673     713 ..     667     722 .. 0.84
   4 !   33.4   0.0   8.9e-11   6.2e-09     129     239 ..     884     989 ..     880    1033 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.79
  TIGR02142  26 talFGrsGsGktslirlia 44 
                 +l G   +Gkt+l+r ia
  MMETSP1061-20121228|243_1 438 YGLLGGNDCGKTTLMRSIA 456
                5799999*********998 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 4.3e-11
  TIGR02142 128 lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvka 212
                 +++LsGG + + a++RA+L + ++Ll+DeP   LD    + +  yL++l    ++ +++vsH+   ++    +++ +e+ ++++
  MMETSP1061-20121228|243_1 527 AVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP---NVTCIMVSHDTGLLNDCCTNILKFENLKLRT 608
                5789*********************************************97...57899****9988777777777777777665 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 4.6e-05
  TIGR02142  12 feLdvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegei 54 
                f+++v+++l++  ++a  G+ G+Gk+++i+l+ G + p+eg +
  MMETSP1061-20121228|243_1 673 FNITVQVSLSS--RVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                44555555555..9**************************986 PP

  == domain 4    score: 33.4 bits;  conditional E-value: 8.9e-11
  TIGR02142 129 pgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdlsllekeeagsvlea 239
                 + LsGG k +v i+ A+  +P+++++DeP   LD+++    l  L +  + ++  ++ +sH+ + v  l  +  v+++G+++++g ++ +l++   ++  +++   + +a
  MMETSP1061-20121228|243_1 884 MSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRES----LGGLAHAIETFDGGVIIISHNNEFVSTLCPETWVMDAGHLETKGDADWMLKQD-TKIDDQQQLQEMTDA 989
                568********************************865....7778888999999********************************99988765.444444444444444 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.68        47      18      52 ..     422     456 ..     411     464 .. 0.83
   2 !   36.3   0.0   1.3e-11     9e-10     120     217 ..     505     604 ..     495     607 .. 0.83
   3 !   12.3   0.0   0.00029      0.02      10      62 ..     661     713 ..     654     735 .. 0.84
   4 !   32.8   0.0   1.6e-10   1.1e-08     120     180 ..     863     925 ..     839     962 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.68
  TIGR02982  18 kqvlfdinleiepgeiviltGpsGsGkttlltlig 52 
                k +l++ ++++  g    l G   +Gkttl+  i+
  MMETSP1061-20121228|243_1 422 KILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA 456
                66788999999999999999999*******98765 PP

  == domain 2    score: 36.3 bits;  conditional E-value: 1.3e-11
  TIGR02982 120 akaeelleavglee....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnril.dvadrivkmedG 217
                +k +e+l +vg+ e    + d+  + lsgG + ++a+ara+ ++ +++l dePt  ld      v + l+ l    ++t ++v hd+ +l d +  i+k+e+ 
  MMETSP1061-20121228|243_1 505 SKIREVLGTVGFTEdgkaKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP---NVTCIMVSHDTGLLnDCCTNILKFENL 604
                5778999*****99344344444567********************************999888888888775...7999*******9883578889888875 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 0.00029
  TIGR02982  10 yygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGel 62 
                 +    + k  lf+i ++++    v   G+ G+Gk t++ l+ g  + qeG++
  MMETSP1061-20121228|243_1 661 TFTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                55666667889****************************************86 PP

  == domain 4    score: 32.8 bits;  conditional E-value: 1.6e-10
  TIGR02982 120 akaeelleavglee..rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrev 180
                +++e+ l+  gl      +y+ + lsgGqk +v ia a+  +P++v+ dePt  ld++s   +
  MMETSP1061-20121228|243_1 863 KNVESHLNGCGLAPefGTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGL 925
                55566677777766223589999*********************************9985544 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   5.5e-13   3.9e-11       9     209 ..     418     606 ..     413     627 .. 0.80
   2 !   11.3   0.0   0.00054     0.038      16      60 ..     672     716 ..     657     728 .. 0.88
   3 !   27.2   0.0   7.5e-09   5.2e-07     110     218 ..     864     970 ..     841     977 .. 0.78

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 5.5e-13
  TIGR00968   9 rfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqh.yalfkhltvrdniafGleirkkdkakikakveellelvqleklgdryp....sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGki 209
                 +G+   l++ ++++  G+  +llG    Gk+tl+r ia    + +G       dvt+vk+      fv  +      hl+  d +a    i   +      k+ e+l  v++++ g+  p    s lsGG r ++alara+  + ++llldep   ld      ++++l  l    +vt+++v+hd     +   +i  +e+ k+
  MMETSP1061-20121228|243_1 418 AYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANN--QVEGF-----PDVTQVKTV-----FVEADiQGEQSHLSCVDYVAVDPAIAALNIG--TSKIREVLGTVGFTEDGKAKPdhavSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP---NVTCIMVSHDTGLLNDCCTNILKFENLKL 606
                68999999******************************953..43442.....688888654.....3333313456899999999999999877655..467889999999999887777333368********************************976666666666664...69********9888888877777776665 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00054
  TIGR00968  16 lddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrille 60 
                l ++ ++v   s va +G  G+Gkst+++++ G   p++G ++ +
  MMETSP1061-20121228|243_1 672 LFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWKH 716
                66789999999***********************9**99999865 PP

  == domain 3    score: 27.2 bits;  conditional E-value: 7.5e-09
  TIGR00968 110 kveellelvqle.klgdryp.sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeev 218
                +ve  l+  +l+ ++g +y  s lsGGq+ +v +a a+ ++p++++ldep   ld +        l +  +  +   ++++h++e    +  +  v++ G++e  g a+ +
  MMETSP1061-20121228|243_1 864 NVESHLNGCGLApEFGTHYRmSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGG----LAHAIETFDGGVIIISHNNEFVSTLCPETWVMDAGHLETKGDADWM 970
                56666666666536888885378********************************544333....3444455666678888999999999999999999999888877655 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.8   3.4e-10   2.4e-08       7     171 ..     416     574 ..     410     588 .. 0.71
   2 !   18.0   0.0   5.6e-06   0.00039      13      60 ..     669     716 ..     658     767 .. 0.82
   3 !   26.8   0.0   1.1e-08     8e-07     107     185 ..     864     941 ..     814     949 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 3.4e-10
  TIGR01189   7 aveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq..seqktveealekvgLsg....ledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaella 171
                + + g++ ll++ +++l  G    + G n  GKttL+R +a  +      v+  ++   e            +  +g +++Ls ++ +    a+ +    + ++ e l +vg ++      d +v++Ls G + +lalar +l++a + +LDEPt  lD+  v+ +++ l+
  MMETSP1061-20121228|243_1 416 TLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANNQVEGFPDVTQVKTVFVE------------ADIQGEQSHLSCVDYVAVDPAIAAlnIGTSKIREVLGTVGFTEdgkaKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLN 574
                556688899999****************************97554433344333222222............2222333333333333222222221122336899999999875222256789************************************99988887765 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 5.6e-06
  TIGR01189  13 rvlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGeveln 60 
                +  l +++++++    ++  G+nG+GK+t++++l G + p++G v  +
  MMETSP1061-20121228|243_1 669 KPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWKH 716
                5667788999999999****************************9654 PP

  == domain 3    score: 26.8 bits;  conditional E-value: 1.1e-08
  TIGR01189 107 tveealekvgLsgl..edlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllath 185
                +ve  l+  gL+    ++  +++Ls Gqk ++ +a  +  +  + iLDEPt  lD+e+   la++++     gG+++++ h
  MMETSP1061-20121228|243_1 864 NVESHLNGCGLAPEfgTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF--DGGVIIIS-H 941
                5777777778764323788999******************************************99965..56666654.4 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0    0.0003     0.021      14      52 ..     419     457 ..     413     473 .. 0.86
   2 !   36.3   0.0   1.2e-11   8.1e-10     113     194 ..     505     587 ..     498     591 .. 0.89
   3 ?    4.9   0.0     0.039       2.7      19      63 ..     671     715 ..     656     727 .. 0.87
   4 !   26.0   0.0   1.6e-08   1.1e-06     115     217 ..     865     965 ..     857     977 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.0003
  TIGR03265  14 feaftalkdislsvkkgelvclLGPsGCGkttLLriiaG 52 
                +++   l++ ++++ +g    lLG   CGkttL+r ia 
  MMETSP1061-20121228|243_1 419 YGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIAN 457
                5666778999999999999******************96 PP

  == domain 2    score: 36.3 bits;  conditional E-value: 1.2e-11
  TIGR03265 113 erveelLelvglsgseekyP....gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd 194
                ++++e+L +vg+++ ++  P    + lsGG + ++aLara+    ++LLLDeP   LD    + +++ l++l    +vt imv hd
  MMETSP1061-20121228|243_1 505 SKIREVLGTVGFTEDGKAKPdhavSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP---NVTCIMVSHD 587
                799*********99988888444468********************************998888888888886...7********9 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.039
  TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaill 63 
                +l +i ++v+ +  v+ +G  G Gk+t+++++ G   +++G + +
  MMETSP1061-20121228|243_1 671 TLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWK 715
                67789999999999********************99999998865 PP

  == domain 4    score: 26.0 bits;  conditional E-value: 1.6e-08
  TIGR03265 115 veelLelvgls.gseekyP.gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvg 217
                ve+ L+  gl  + ++ y  + lsGGq+ +v +a a+ ++P++++LDeP   LD      L + ++++        i++ h+ e   +l+    vm++g++e  g
  MMETSP1061-20121228|243_1 865 VESHLNGCGLApEFGTHYRmSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDG----GVIIISHNNEFVSTLCPETWVMDAGHLETKG 965
                5555555565313445553278********************************7777777777766654....568999*******************999877 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.13       8.8      18      49 ..     425     456 ..     414     488 .. 0.79
   2 !   21.2   0.0   5.6e-07   3.9e-05     122     212 ..     505     598 ..     495     625 .. 0.80
   3 !   21.5   0.0   4.7e-07   3.3e-05      20      62 ..     674     716 ..     655     731 .. 0.83
   4 !   29.6   0.0   1.6e-09   1.1e-07     120     234 ..     861     976 ..     837     981 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.13
  TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvit 49 
                l++ ++++ +g    ++G n  Gkttl+  i+
  MMETSP1061-20121228|243_1 425 LHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA 456
                6677888888888899************8876 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 5.6e-07
  TIGR03411 122 erieevleligLee....kadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekv 212
                ++i+evl ++g +e    k d+  ++Ls G +  L ++  ++q++++lllDeP+  +   + + +   l++l +  + ++v hD + +++  +++
  MMETSP1061-20121228|243_1 505 SKIREVLGTVGFTEdgkaKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPN-VTCIMVSHDTGLLNDCCTNI 598
                67888888888876221144567799*********************************************986.5667789**99998877766 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 4.7e-07
  TIGR03411  20 dlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfk 62 
                +++++v+  +  + iG nGaGk+t++ +++G + p+eG+v  +
  MMETSP1061-20121228|243_1 674 NITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWKH 716
                56666666677789*************************9866 PP

  == domain 4    score: 29.6 bits;  conditional E-value: 1.6e-09
  TIGR03411 120 ekerieevleligLeek..adkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldev.qadek 234
                +++++e+ l+  gL+ +  ++ + ++Ls Gqk  + i+  +  +p++++lDeP+  + +e     a+ +++   +  v+++ h+ efv +l  +  v+  G++ ++G+ d + ++d k
  MMETSP1061-20121228|243_1 861 STKNVESHLNGCGLAPEfgTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF--DGGVIIISHNNEFVSTLCPETWVMDAGHLETKGDADWMlKQDTK 976
                56678888888888877224567899****************************998766655555555555..4579*****************************99965155555 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   4.1e-10   2.8e-08      85     206 ..     485     605 ..     415     610 .. 0.77
   2 !   27.1   0.0   8.8e-09   6.1e-07       7      57 ..     663     715 ..     655     727 .. 0.81
   3 !   17.0   0.0   1.1e-05   0.00075     128     210 ..     886     964 ..     869     967 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 4.1e-10
  TIGR01277  85 ltvrqniglGlkpglklnavqkekvedvarqvGiadylerlpe....elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkk.ladekkltlllvthslsdaaaiasqvvvvedGk 206
                l+  + ++  ++p++    +   k+++v   vG ++  +  p+     lsGG r ++alar ++++  illldep   ld       +a vk+ l +  ++t ++v+h+   +    ++++  e+ k
  MMETSP1061-20121228|243_1 485 LSCVDYVA--VDPAIAALNIGTSKIREVLGTVGFTEDGKAKPDhavsTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVIN----VAWVKTyLNSLPNVTCIMVSHDTGLLNDCCTNILKFENLK 605
                55555544..567777667777888888888888877666665222269****************************999764....56666513445689*******9988888888777766655 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 8.8e-09
  TIGR01277   7 iyeykhlplefdlsve..aGervailGesGaGkstllnliaGflepasGeikv 57 
                +y  +++p  f+++v+     rva +Ge GaGkst+++l+ G + p +G+++ 
  MMETSP1061-20121228|243_1 663 TYPGNTKPTLFNITVQvsLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWK 715
                344578888898887611579*****************************985 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 1.1e-05
  TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                 lsGGq+ +v +a  +  +  i++ldep   ld+    e l  +++  +  +  +++++h+ + + +   ++ v++ G+++++
  MMETSP1061-20121228|243_1 886 ALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDR----ESLGGLAHAIETFDGGVIIISHNNEFVSTLCPETWVMDAGHLETK 964
                69***************9999*******999984....778888999999999999999999999999988888888887765 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.22        15       9      46 ..     418     455 ..     412     485 .. 0.87
   2 !   32.0   0.0   2.1e-10   1.5e-08     128     226 ..     508     607 ..     468     629 .. 0.80
   3 !    8.3   0.0    0.0037      0.26      18      56 ..     674     712 ..     664     735 .. 0.85
   4 !   32.3   0.0   1.8e-10   1.2e-08     131     245 ..     869     981 ..     841     988 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.22
  TIGR03005   9 rfgeltvldglelevaaGekvaliGpsGsGkstilril 46 
                 +g+  +l++ ++++ +G++  l+G    Gk+t++r +
  MMETSP1061-20121228|243_1 418 AYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSI 455
                688888999**************************965 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 2.1e-10
  TIGR03005 128 velldmvGlad....kadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiv 226
                 e+l  vG+++    k d+  + lsGG + ++a+ara+  +  +ll+de+t  ld      v  v   l s  ++t ++v+h+ g+ ++ +  +l f++ k+ 
  MMETSP1061-20121228|243_1 508 REVLGTVGFTEdgkaKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVIN---VAWVKTYLNSLPNVTCIMVSHDTGLLNDCCTNILKFENLKLR 607
                46788888865222266788899********************************655...5555566677789********************999987764 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0037
  TIGR03005  18 glelevaaGekvaliGpsGsGkstilrilmtletideGs 56 
                ++ ++v+   +va iG  G+Gkst++++l+   + +eG 
  MMETSP1061-20121228|243_1 674 NITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGD 712
                677899999*******************98766666665 PP

  == domain 4    score: 32.3 bits;  conditional E-value: 1.8e-10
  TIGR03005 131 ldmvGladka.dal.paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpkeertre 245
                l+  Gla     ++  + lsGGqk +v ia a+ ++p+++++de+t  ld e ++ +   +    +  d  +++++h+  f   ++     +d G++  +G  d ++++  +   ++
  MMETSP1061-20121228|243_1 869 LNGCGLAPEFgTHYrMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAI----ETFDGGVIIISHNNEFVSTLCPETWVMDAGHLETKGDADWMLKQDTKIDDQQ 981
                555666654313442478********************************98777665555....55688999****************************9999988876655555 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.2       2.4   1.7e+02     324     385 ..      28      93 ..       5     110 .. 0.64
   2 !   25.4   0.0   1.3e-08   8.8e-07     614     679 ..     527     593 ..     514     618 .. 0.80
   3 !   21.1   0.0   2.5e-07   1.7e-05     478     538 ..     654     713 ..     633     731 .. 0.86
   4 !   28.5   0.0   1.4e-09   9.9e-08     616     703 ..     885     973 ..     877     980 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.4
  TIGR00958 324 vyqklseevqeavak.anqvaeEalsglrTVrSFaaEekEasrf.kekleeilq..lnkkkalaya 385
                    l+e +   va+ a++   Eals+++ V+  a     a+ f ke l  +l+  + k k++  a
  MMETSP1061-20121228|243_1  28 AKSGLAEAITTLVARcASKTEAEALSAMKVVKELAESVPTAQPFvKECLGACLEqaVSKSKDVSTA 93 
                555666777777777345566799999999998887766666663344555543225555555555 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 1.3e-08
  TIGR00958 614 kGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe.sksaksrtvlliahrLstvek 679
                + s lsgG + ++A+ARA++++  +L+LDe t  LD+   + +++  +s  + t +++ h   + + 
  MMETSP1061-20121228|243_1 527 AVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTyLNSLPNVTCIMVSHDTGLLND 593
                5578*********************************555555554899999999999997666654 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 2.5e-07
  TIGR00958 478 kveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqv 538
                 ++  + +F+YP    kp l ++t +++  + va +G +G GKSt++ ll     P++G+v
  MMETSP1061-20121228|243_1 654 LMKMANCTFTYPGNT-KPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                4678899*****975.78899******************************9999999988 PP

  == domain 4    score: 28.5 bits;  conditional E-value: 1.4e-09
  TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkqLmek 703
                s lsgGqk ++ iA A+  +P ++iLDe t  LD e+   l +  ++ +  v++i h  + v   + +  v+  g+++ +G+ + + ++
  MMETSP1061-20121228|243_1 885 SALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDGGVIIISHNNEFVSTlCPETWVMDAGHLETKGDADWMLKQ 973
                579*******************************************************9999754899999999999999987766555 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.3e-05    0.0037      12      51 ..     417     456 ..     406     491 .. 0.87
   2 !   25.1   0.0   2.5e-08   1.7e-06     126     172 ..     521     567 ..     498     593 .. 0.81
   3 !   13.2   0.0    0.0001     0.007      30      61 ..     682     713 ..     663     733 .. 0.83
   4 !   22.2   0.0   1.8e-07   1.3e-05     130     224 ..     881     972 ..     858     999 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.3e-05
  TIGR01288  12 ksygdkvvvndlsftiaagecfgllgpngagkstiarlvl 51 
                 +yg k+++++  + + +g  +gllg n +gk+t+ r + 
  MMETSP1061-20121228|243_1 417 LAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA 456
                58*********************************99875 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 2.5e-08
  TIGR01288 126 eskadvrvadlsggmkrrltlaralindpqllildepttgldpharh 172
                ++k d  v++lsgg + +l+lara++++ ++l+ldept  ld     
  MMETSP1061-20121228|243_1 521 KAKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVA 567
                678999***********************************976554 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 0.0001
  TIGR01288  30 gecfgllgpngagkstiarlvlglispdegki 61 
                      +g ngagkst+ +l++g i+p+eg +
  MMETSP1061-20121228|243_1 682 SSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                55567799**********************86 PP

  == domain 4    score: 22.2 bits;  conditional E-value: 1.8e-07
  TIGR01288 130 dvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalid 224
                + r++ lsgg k ++ +a+a+  +p+++ildept  ld  +   +     ++ +    +++ +h  e    lc    v++ag   ++g  d +++
  MMETSP1061-20121228|243_1 881 HYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLA---HAIETFDGGVIIISHNNEFVSTLCPETWVMDAGHLETKGDADWMLK 972
                67899*********************************77655444...4555555667777899999999999999999998777777666554 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.16        11     475     523 ..     409     458 ..     375     503 .. 0.71
   2 !   30.2   0.0   5.1e-10   3.6e-08     609     669 ..     528     588 ..     516     616 .. 0.90
   3 !   23.1   0.0   7.3e-08     5e-06     472     545 ..     653     728 ..     645     745 .. 0.78
   4 !   16.6   0.0   6.9e-06   0.00048     609     698 ..     884     973 ..     870     978 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.16
  TIGR01193 475 evndvsysyGygsev.ledislkikknekitlvGlsGsGkstlakllvkf 523
                e+ + ++   yg+++ l++ ++k+ + ++  l+G    Gk+tl++ + + 
  MMETSP1061-20121228|243_1 409 ELCNCTFTLAYGTKIlLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANN 458
                566788999999998369*************************9987664 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 5.1e-10
  TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrl 669
                 s++sgG + +lalara+l ++++l+lde t +ld++    +   l +l + t i+v+h  
  MMETSP1061-20121228|243_1 528 VSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPNVTCIMVSHDT 588
                579***********************************9999999999**********965 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 7.3e-08
  TIGR01193 472 gdievndvsysy.GygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillng.kslkdidkhe 545
                + +++ + ++ y G +++ l +i+++++  ++++ +G  G+Gkst++kllv+   +++G++   +   ++ + +h+
  MMETSP1061-20121228|243_1 653 ALMKMANCTFTYpGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWKHPnARVAYVAQHA 728
                557889999999888999*****************************************98654313445454444 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 6.9e-06
  TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrls.vakksdkiivldeGkiieqGshkellke 698
                 s++sgGqk ++ +a a+  + +++ilde t  ld      + + + +  d  +i ++h  + v+    +  v+d G++  +G+ + +lk+
  MMETSP1061-20121228|243_1 884 MSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAI-ETFDGGVIIISHNNEfVSTLCPETWVMDAGHLETKGDADWMLKQ 973
                578********************************87766665555.55588999999988746777889999999999989988888776 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00022     0.015      15      56 ..     416     457 ..     412     473 .. 0.93
   2 !   32.2   0.0   1.7e-10   1.2e-08     118     200 ..     506     588 ..     483     596 .. 0.82
   3 ?    6.2   0.0     0.014      0.95      16      64 ..     662     712 ..     648     722 .. 0.78
   4 !   21.4   0.0   3.3e-07   2.3e-05     131     224 ..     878     967 ..     856     976 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00022
  TIGR03258  15 rvaygarvvlddlsleieaGellallGksGsGkttllravaG 56 
                ++ayg++++l++  +++  G    llG   +Gkttl+r +a 
  MMETSP1061-20121228|243_1 416 TLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIAN 457
                679*************************************95 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 1.7e-10
  TIGR03258 118 rvadalklvqlsdaaarlp....aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdr 200
                ++ + l +v++++ ++  p    + lsGG + ++alara+  + d+llldep   ld          +k+  + lp++t ++v+hd 
  MMETSP1061-20121228|243_1 506 KIREVLGTVGFTEDGKAKPdhavSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINV----AWVKTYLNSLPNVTCIMVSHDT 588
                66778889999888877662222579*******************************8543....4567777899**********96 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.014
  TIGR03258  16 vaygarv..vlddlsleieaGellallGksGsGkttllravaGfvkadGGr 64 
                 +y +++   l ++++++     +a +G+ G+Gk+t+++++ G + ++ G 
  MMETSP1061-20121228|243_1 662 FTYPGNTkpTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGD 712
                556555522466777888888899*******************99998876 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 3.3e-07
  TIGR03258 131 aaarlp.aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGet 224
                +++++  + lsGGq+ +v +a a+ ++p++++ldep   ld +    + + ++++     +  v++++h+++   +l     +m  G+l ++G++
  MMETSP1061-20121228|243_1 878 FGTHYRmSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF-----DGGVIIISHNNEFVSTLCPETWVMDAGHLETKGDA 967
                566765257********************************76655555555443.....45788888888888888888888888888888876 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.032       2.2       1      41 [.     440     485 ..     440     497 .. 0.74
   2 !   35.7   0.0   1.6e-11   1.1e-09      78     160 ..     504     587 ..     496     590 .. 0.88
   3 ?    6.0   0.0     0.016       1.1       2      28 ..     688     714 ..     687     730 .. 0.84
   4 !   24.4   0.0   4.3e-08     3e-06      96     185 ..     882     967 ..     864     976 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.032
  TIGR01187   1 lLGpsGsGkttlLrlla.....GleeldsGkilldgedvtevpaek 41 
                lLG   +Gkttl+r +a     G+ ++ + k ++ + d+    +++
  MMETSP1061-20121228|243_1 440 LLGGNDCGKTTLMRSIAnnqveGFPDVTQVKTVFVEADIQGEQSHL 485
                79************99855555666677777777777776666665 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 1.6e-11
  TIGR01187  78 kervkeaLelvqleefakrkp....sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthD 160
                +++++e+L +v ++e +k kp    s lsGG r ++alara+ ++ +iLLlDep   LD      +++ l++l     +t+++v hD
  MMETSP1061-20121228|243_1 504 TSKIREVLGTVGFTEDGKAKPdhavSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP---NVTCIMVSHD 587
                5789*************9998433357********************************988888887777776...49*******9 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.016
  TIGR01187   2 LGpsGsGkttlLrllaGleeldsGkil 28 
                +G  G+Gk+t+++ll G   +++G + 
  MMETSP1061-20121228|243_1 688 IGENGAGKSTMIKLLVGEIAPQEGDVW 714
                6999********************985 PP

  == domain 4    score: 24.4 bits;  conditional E-value: 4.3e-08
  TIGR01187  96 rkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigep 185
                 ++s lsGGq+ +v +a a+  +P+i++lDep   LD++    + + ++++       v+++ h+ e   t+     v+  G+++  g++
  MMETSP1061-20121228|243_1 882 YRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDG----GVIIISHNNEFVSTLCPETWVMDAGHLETKGDA 967
                46789********************************9876666666665543....567788888888888888888888888877766 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00094     0.065       4      27 ..     433     456 ..     430     470 .. 0.88
   2 !   24.8   0.0   4.8e-08   3.3e-06     108     184 ..     525     599 ..     505     608 .. 0.86
   3 !   11.6   0.0   0.00053     0.037       7      56 ..     683     726 ..     677     732 .. 0.79
   4 !   23.6   0.0   1.1e-07   7.6e-06     111     172 ..     884     942 ..     865     966 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00094
  TIGR03771   4 dkGellgllGpnGaGkttllrail 27 
                 +G   gllG n  Gkttl+r+i 
  MMETSP1061-20121228|243_1 433 LRGRNYGLLGGNDCGKTTLMRSIA 456
                578889***************995 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 4.8e-08
  TIGR03771 108 drpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvv 184
                d +v  lsGG r ++ +ara+  +  +llldep   ld+     +   +++l   + + +m++hd     ++c  ++
  MMETSP1061-20121228|243_1 525 DHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP--NVTCIMVSHDTGLLNDCCTNIL 599
                67899********************************************9997..578999***9888888887766 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 0.00053
  TIGR03771   7 ellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpq 56 
                  ++ +G nGaGk+t+++ ++g i++++G v    +      +++ yv q
  MMETSP1061-20121228|243_1 683 SRVACIGENGAGKSTMIKLLVGEIAPQEGDVWKHPN------ARVAYVAQ 726
                568999***********************9976553......44556555 PP

  == domain 4    score: 23.6 bits;  conditional E-value: 1.1e-07
  TIGR03771 111 vGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthd 172
                +  lsGGq+ +v++a a+ ++p++++ldep   ld    e+l +l +++ + +  +++ +h+
  MMETSP1061-20121228|243_1 884 MSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDR---ESLGGLAHAIETFDGGVIIISHN 942
                5689***************************99996...66666666666666666666666 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.26        18       2      34 ..     425     457 ..     424     486 .. 0.85
   2 !   28.6   0.0   2.7e-09   1.9e-07     105     197 ..     509     599 ..     494     618 .. 0.81
   3 ?    2.8   0.0       0.2        14       5      36 ..     675     706 ..     672     715 .. 0.77
   4 !   35.1   0.0   2.7e-11   1.9e-09     125     215 ..     886     972 ..     862     986 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.26
  TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailg 34 
                 ++ +++l rg+  +l+G   +Gk++   +i +
  MMETSP1061-20121228|243_1 425 LHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIAN 457
                6788999******************98877765 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 2.7e-09
  TIGR02770 105 ealeavgLeeaeevlkkyp.felsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladeva 197
                e l  vg +e  +    ++   lsGG   ++ +a a+l +a +l+ DePt  lDv + a v  +l++l +   ++ ++++hD g +  +  +++
  MMETSP1061-20121228|243_1 509 EVLGTVGFTEDGKAKPDHAvSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPN---VTCIMVSHDTGLLNDCCTNIL 599
                55555555554444444441479***9999999999*****************************99975...67899*******999988876 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.2
  TIGR02770   5 vnlslkrgkvlalvGesGsGksltalailgll 36 
                + +++     +a +Ge G+Gks+  + ++g +
  MMETSP1061-20121228|243_1 675 ITVQVSLSSRVACIGENGAGKSTMIKLLVGEI 706
                56667777889***********9887766655 PP

  == domain 4    score: 35.1 bits;  conditional E-value: 2.7e-11
  TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215
                 lsGG   +v+ia a+ +++ ++i DePt  lD       L  l +  e+++ g+++i+h+   v+ l  e  vm++G++  +g+++ +++
  MMETSP1061-20121228|243_1 886 ALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRE----SLGGLAHAIETFDGGVIIISHNNEFVSTLCPETWVMDAGHLETKGDADWMLK 972
                69*******************************75....589999999******************************9988887776665 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0      0.12       8.7      24      57 ..     425     458 ..     412     476 .. 0.85
   2 !   28.6   0.0   2.7e-09   1.9e-07     147     221 ..     528     600 ..     522     603 .. 0.85
   3 !   20.2   0.0   9.8e-07   6.8e-05      18      76 ..     666     724 ..     654     738 .. 0.84
   4 !   15.9   0.0   2.1e-05    0.0015     146     185 ..     883     922 ..     863     955 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.12
  TIGR02324  24 lkevsleveaGelvalsGksGaGkstllkslyan 57 
                l++ ++++  G    l G    Gk tl++s+ +n
  MMETSP1061-20121228|243_1 425 LHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANN 458
                6788999999********************9766 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 2.7e-09
  TIGR02324 147 PatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadrele 221
                 +t sGG + ++ +ara++++  iLLLdePt  Ld  n + v   ++++ +  + +  + hd  + + +++  l+
  MMETSP1061-20121228|243_1 528 VSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPNVTCIM--VSHDTGLLNDCCTNILK 600
                58*****************************************9999987765555..56888777777776665 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 9.8e-07
  TIGR02324  18 GvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdl 76 
                G + p+l +++++v+    va +G+ GaGkst++k l ++  p+ g ++ + +  +  +
  MMETSP1061-20121228|243_1 666 GNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVWKHPNARVAYV 724
                67789999***************************************997665555444 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 2.1e-05
  TIGR02324 146 aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanr 185
                  +  sGG k +v ia a+ ++  i++LdePt  Ld    
  MMETSP1061-20121228|243_1 883 RMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESL 922
                55789****************777999********87654 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.011      0.73      12      50 ..     421     459 ..     412     480 .. 0.84
   2 !   11.5   0.0   0.00044     0.031     145     209 ..     531     593 ..     519     600 .. 0.91
   3 !   14.5   0.0   5.5e-05    0.0038      12      49 ..     668     705 ..     661     715 .. 0.90
   4 !   34.7   0.0   3.8e-11   2.6e-09     123     234 ..     865     972 ..     853     979 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.011
  TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghe 50 
                 k +L++ ++++ +G  + ++G n  Gk tL++ +a ++
  MMETSP1061-20121228|243_1 421 TKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANNQ 459
                56679999***************************9876 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00044
  TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllel 209
                 sGG + +  + + +l + ++ +LDe    lDv  +  v + +n+l   + ++++++h + ll+ 
  MMETSP1061-20121228|243_1 531 LSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP--NVTCIMVSHDTGLLND 593
                79******************************************985..6789*****9999885 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 5.5e-05
  TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                 k+ L +++++v+    +a +G nG+Gkst+ k l+g+
  MMETSP1061-20121228|243_1 668 TKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGE 705
                577899999**************************997 PP

  == domain 4    score: 34.7 bits;  conditional E-value: 3.8e-11
  TIGR01978 123 lkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvelake 234
                ++++l+   l  e+ + +  +  sGG k +  i   + ++P+++iLDe    lD ++l  +a+ ++++   + +++ii+h++++++++ P++  v+ +G++ ++Gd++ + +
  MMETSP1061-20121228|243_1 865 VESHLNGCGLAPEFGTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF---DGGVIIISHNNEFVSTLCPET-WVMDAGHLETKGDADWMLK 972
                55556666666677777777889***************************************999887...689****************97.89***********997765 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.053       3.7      20      51 ..     424     455 ..     409     471 .. 0.85
   2 !   27.7   0.0     4e-09   2.8e-07     119     215 ..     505     602 ..     498     633 .. 0.86
   3 !    7.4   0.0    0.0059      0.41      11      62 ..     662     713 ..     654     719 .. 0.80
   4 !   27.6   0.0   4.1e-09   2.9e-07     138     224 ..     884     966 ..     851     985 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.053
  TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircv 51 
                 l+n ++ + +g+ +g++g    gk+tl+r +
  MMETSP1061-20121228|243_1 424 LLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSI 455
                4789999999********************87 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 4e-09
  TIGR02314 119 rkvtellalvglsdkkdsyp....snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavid 215
                 k+ e+l  vg+++  ++ p    s lsgg + ++a+ara+  +  +ll de t  ld      + + l       ++t ++++h+  ++   c ++   +
  MMETSP1061-20121228|243_1 505 SKIREVLGTVGFTEDGKAKPdhavSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLN---SLPNVTCIMVSHDTGLLNDCCTNILKFE 602
                6899*********9766666444489********************************999988888775...55699*********99999998876555 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0059
  TIGR02314  11 fdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgav 62 
                f   +++  +l n+++ v     +  ig  gagkst+i+ +     p +g+v
  MMETSP1061-20121228|243_1 662 FTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                55556666788999999999999***************98766666777766 PP

  == domain 4    score: 27.6 bits;  conditional E-value: 4.1e-09
  TIGR02314 138 psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgt 224
                 s lsggqk +v ia a+  +p++++ de t  ld    +s+  l + i+ +++  +++i+h+ + v  +c e  v+d g+l  kg 
  MMETSP1061-20121228|243_1 884 MSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDR---ESLGGLAHAIE-TFDGGVIIISHNNEFVSTLCPETWVMDAGHLETKGD 966
                489********************************6...45555666665.67778999**********************977765 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.017       1.2      11      48 ..     419     456 ..     413     475 .. 0.88
   2 !   24.2   0.0   3.3e-08   2.3e-06     395     461 ..     522     586 ..     513     607 .. 0.88
   3 !   15.6   0.0   1.3e-05   0.00092       2      49 ..     655     704 ..     654     720 .. 0.79
   4 !   19.1   0.0   1.2e-06     8e-05     401     481 ..     884     961 ..     876     976 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.017
  TIGR02633  11 fggvkaldnidlklraGeivslcGenGaGkstlmkvls 48 
                +g    l+n ++kl  G   +l G n +Gk+tlm+ ++
  MMETSP1061-20121228|243_1 419 YGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA 456
                55566799**************************9765 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 3.3e-08
  TIGR02633 395 aspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvss 461
                a+pd ++++lsGG + k  la+ +l n  +l+ldept  +dv   + +   +n l +  v+ i+vs 
  MMETSP1061-20121228|243_1 522 AKPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPN--VTCIMVSH 586
                78****************************************998888888888864..66777765 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 1.3e-05
  TIGR02633   2 lemkgivkkfggvk..aldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                ++m + + ++ g +  +l ni++++     v+  GenGaGkst++k+l g
  MMETSP1061-20121228|243_1 655 MKMANCTFTYPGNTkpTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVG 704
                5666666666443323689****************************987 PP

  == domain 4    score: 19.1 bits;  conditional E-value: 1.2e-06
  TIGR02633 401 iarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGkl 481
                +++lsGG++ k v+a  + ++p+++ildept  +d  +   + + i+++      +i++s +   v  l+    v++ G+l
  MMETSP1061-20121228|243_1 884 MSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF---DGGVIIISHNNEFVSTLCPETWVMDAGHL 961
                6789999999999999999999999999999988865554444444433...22344555555555555555556655555 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.4e-10   9.6e-09     470     530 ..     529     588 ..     521     620 .. 0.87
   2 !   17.4   0.0     4e-06   0.00028     307     392 ..     624     713 ..     599     727 .. 0.77
   3 !   16.1   0.0     1e-05   0.00071     468     562 ..     883     976 ..     874     993 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 1.4e-10
  TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrl 530
                + lsgg r +la+ara+l+na il+lde t  ldv   a vk  +++l  n t ++++h  
  MMETSP1061-20121228|243_1 529 STLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP-NVTCIMVSHDT 588
                689*****************************************99996.67778888865 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 4e-06
  TIGR01192 307 edffdledsvkereep..adarelkn.vkgavefrdisfefa.nssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqi 392
                + ff+l+ s  +   p  + ++ +k+  k  +++ + +f ++ n++  +++++ ++     va +g  gagk+t+i ll     p++g +
  MMETSP1061-20121228|243_1 624 RSFFSLKASKIKMSFPppGPIEGVKSkGKALMKMANCTFTYPgNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                56777777666555431144444433134457889999999769999********************************99999998876 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 1e-05
  TIGR01192 468 rgnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvre.adlvlfldqgrliekgsfdeliqkdgr 562
                r + lsgg++ ++ ia a+  +  i++lde t  ld e+   + +ai+++  +   +ii+h    v         +d g l  kg  d + ++d +
  MMETSP1061-20121228|243_1 883 RMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETF--DGGVIIISHNNEFVSTlCPETWVMDAGHLETKGDADWMLKQDTK 976
                7789*******************************************987..56788999986555441233455788888888877777666655 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.26        18       2      33 ..     426     457 ..     425     472 .. 0.85
   2 !   27.7   0.0   5.8e-09     4e-07      95     175 ..     507     588 ..     488     595 .. 0.79
   3 !    9.6   0.0    0.0019      0.13       3      42 ..     674     713 ..     672     719 .. 0.89
   4 !   24.5   0.0   5.3e-08   3.7e-06      66     147 ..     836     919 ..     831     959 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.26
  TIGR01184   2 kdvdleikkgefislighsgcgkstllnliag 33 
                ++ ++++ +g    l+g   cgk+tl+  ia 
  MMETSP1061-20121228|243_1 426 HNTKMKLLRGRNYGLLGGNDCGKTTLMRSIAN 457
                56778888999999************988875 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 5.8e-09
  TIGR01184  95 veehielvglreaa....dkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdv 175
                ++e +  vg++e      d+ ++ lsgg + ++a+ara+    ++llldep   ld +    ++  l  +    +vt++mv+hd 
  MMETSP1061-20121228|243_1 507 IREVLGTVGFTEDGkakpDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSL---PNVTCIMVSHDT 588
                5666666777665400114455689*********************************999998877666...569*******95 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.0019
  TIGR01184   3 dvdleikkgefislighsgcgkstllnliaglekptsgav 42 
                ++ ++++    ++ ig  g gkst++ l+ g   p +g v
  MMETSP1061-20121228|243_1 674 NITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713
                678888888999***********************99988 PP

  == domain 4    score: 24.5 bits;  conditional E-value: 5.3e-08
  TIGR01184  66 lpwltvrenialavdavlrdlskserreiveehielvglre..aadkrpeqlsggmkqrvaiaralsirpklllldepfgalda 147
                + w  + + + l + +      k    + ve+h++  gl     ++ r++ lsgg k +v ia a+ ++p++++ldep   ld 
  MMETSP1061-20121228|243_1 836 MGWEKAMKAVDLKLAQLAGMFVKPLSTKNVESHLNGCGLAPefGTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDR 919
                56888888888988888888999999999*******999752268999******************************999985 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   9.2e-05    0.0064      30      80 ..     409     464 ..     383     491 .. 0.77
   2 !   24.4   0.0   3.2e-08   2.2e-06     162     214 ..     526     578 ..     503     587 .. 0.78
   3 !    7.6   0.0    0.0038      0.26      21      73 ..     652     704 ..     638     714 .. 0.83
   4 !   18.6   0.0   1.7e-06   0.00012     159     200 ..     879     920 ..     868     939 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9.2e-05
  TIGR00955  30 alarkk.....pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglk 80 
                 l+++      ++k ll+n   ++  G    +lG+   GKtTL+  +a+ + +g  
  MMETSP1061-20121228|243_1 409 ELCNCTftlayGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANNQVEGFP 464
                233333334459*************************************9988764 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 3.2e-08
  TIGR00955 162 grvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq 214
                  v +lSgG r +lala  +l++  +L++DEPT  LD +  a v   L++l +
  MMETSP1061-20121228|243_1 526 HAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPN 578
                55789********************************9999888888887765 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0038
  TIGR00955  21 kllvkrleealarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalaf 73 
                k l+k+ +++++   ++k  l n++ ++     +A +G  GaGK+T+++ l  
  MMETSP1061-20121228|243_1 652 KALMKMANCTFTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVG 704
                56666777777777799999****************************99865 PP

  == domain 4    score: 18.6 bits;  conditional E-value: 1.7e-06
  TIGR00955 159 gvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsf 200
                g+  r+ +lSgG++ ++ +a  +  +P+++++DEPT  LD  
  MMETSP1061-20121228|243_1 879 GTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRE 920
                6677899********************************965 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   8.3e-07   5.8e-05     638     793 ..     409     563 ..     393     599 .. 0.77
   2 !   32.0   0.0     7e-11   4.9e-09     630     709 ..     648     729 ..     628     739 .. 0.88
   3 !    5.2   0.0    0.0083      0.58     761    1455 ..     887     920 ..     872     974 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 8.3e-07
  TIGR00957 638 tvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvpqqawiqndslrenilfgkaleekyykavleacalladleilpsgdrteig....ekgv.nlsggqkqrvslaravysdadiyllddplsavda 793
                 + n+tft a +    l++ ++++ +g    ++g   cgk++l+ ++    ++veg   +   v  v  +a iq +  +   +   a+++      + +  +   l    +   te g    ++ v  lsgg + +++lara+  +adi lld+p   +d 
  MMETSP1061-20121228|243_1 409 ELCNCTFTLAYGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIAN--NQVEGFPDVT-QVKTVFVEADIQGEQSHLSCVDYVAVDPAIAALNIGTSKIREVL---GTVGFTEDGkakpDHAVsTLSGGWRMKLALARAMLQNADILLLDEPTNHLDV 563
                56799**************************************999865..6899988875.67888889999999888888888888888877777776665444...44444444411114455379**************************988875 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 7e-11
  TIGR00957 630 kdgegnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkv..alkgsvayvpqqaw 709
                k+ +   + + n+tft+  +  ptl ++t+++   + va +g+ g gks+++  l++e+   eg v  + +  vayv q a+
  MMETSP1061-20121228|243_1 648 KSKGKALMKMANCTFTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVwkHPNARVAYVAQHAF 729
                55544567899******************************************************94455789******997 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0083
  TIGR00957  761 lsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivlsdgkisemgsyqelldrdgafaeflrtyasaedeldaeddgvasvsaedkeaklvedgllvtdvvgkqlqrqlsasssdsedtsrhlsssaelqkaeakeetwklmeadkaqigqvklsvywdyakaiglfitllsillflcnsvsalasnywlslwtddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfavisrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetekeapwqieetappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdle 1455
                 lsggqk +v +a a++ +  i +ld+p                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        +d e
  MMETSP1061-20121228|243_1  887 LSGGQKVKVVIAAAMWMQPHIVILDEPTN-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YLDRE 920 
                 56666666666666666666666666654.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................44444 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.069       4.8       4      39 ..     420     455 ..     418     483 .. 0.87
   2 !   23.5   0.0   8.4e-08   5.8e-06     108     189 ..     505     587 ..     480     590 .. 0.83
   3 !   10.1   0.0   0.00099     0.069      15      51 ..     678     714 ..     667     722 .. 0.84
   4 !   16.8   0.0   8.9e-06   0.00062     114     212 ..     869     965 ..     848    1029 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.069
  TIGR01186   4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrll 39 
                G+k+ +++ ++++  G  + ++G   +Gk+tl+r +
  MMETSP1061-20121228|243_1 420 GTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSI 455
                77788899999**********************976 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 8.4e-08
  TIGR01186 108 ekalealklvdleeyedryPde....lsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                 k +e+l  v++ e  ++ Pd+    lsGG + ++ lara+ ++ d+ll+de+   ld +    ++  l  l    + t ++++hd
  MMETSP1061-20121228|243_1 505 SKIREVLGTVGFTEDGKAKPDHavstLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSLP---NVTCIMVSHD 587
                578899999999777777777434449*******************************998888887776664...5688888888 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00099
  TIGR01186  15 eieeGeiiviiGlsGsGkstlvrllnrliePtaGkil 51 
                ++     +  iG  G+Gkst+++ll   i P +G ++
  MMETSP1061-20121228|243_1 678 QVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVW 714
                55555667789***********************997 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 8.9e-06
  TIGR01186 114 lklvdl.eeyedryP.delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvG 212
                l   +l +e+  +y    lsGG++ +v +a a+ ++P ++++de+   ld   r++l   l +  ++ +  ++ i+h+ +    l+    ++ aG++   G
  MMETSP1061-20121228|243_1 869 LNGCGLaPEFGTHYRmSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLD---RESLG-GLAHAIETFDGGVIIISHNNEFVSTLCPETWVMDAGHLETKG 965
                667788889988886268***************************99999...66664.456666677777777777766666666666666666665555 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.7   1.2e+02    1229    1264 ..     419     454 ..     400     460 .. 0.72
   2 !   29.8   0.0   3.3e-10   2.3e-08    1353    1433 ..     530     610 ..     519     635 .. 0.88
   3 !   15.9   0.0   5.2e-06   0.00036     438     496 ..     668     728 ..     647     734 .. 0.87
   4 ?    4.8   0.0     0.012       0.8     549     580 ..     887     918 ..     882     959 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.7
  TIGR01271 1229 eagravlqdlsfsveagqrvgllgrtgsgkstllsa 1264
                  + + +l++  + +  g++ gllg   +gk+tl+ +
  MMETSP1061-20121228|243_1  419 YGTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRS 454 
                 345566777777788888888888888888888754 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 3.3e-10
  TIGR01271 1353 vlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallec.qqflviegssvkqyd 1433
                  ls g +  + lar++l  a illldep+ +ld + +  + kt  +++ n t i+  h    l +c  ++l  e+ +++ + 
  MMETSP1061-20121228|243_1  530 TLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWV-KTYLNSLPNVTCIMVSHDTGLLNDCcTNILKFENLKLRTFK 610 
                 68999999**************************999877.677789************99998862578889999999885 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 5.2e-06
  TIGR01271 438 vtpvlknislklekgqllavagstgsgkssllmmilgelepsegki.kh.sgrisfspqvs 496
                + p l ni++++     +a  g  g+gks+++ +++ge+ p eg + kh   r+++ +q +
  MMETSP1061-20121228|243_1 668 TKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVwKHpNARVAYVAQHA 728
                5799****************************************9866745899*999976 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.012
  TIGR01271 549 lsggqrarislaravykdadlylldspfsyld 580
                lsggq+ ++ +a a++ +  + +ld p +yld
  MMETSP1061-20121228|243_1 887 LSGGQKVKVVIAAAMWMQPHIVILDEPTNYLD 918
                77777777777777777777777777777777 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.2        83      35      71 ..     420     456 ..     414     468 .. 0.86
   2 !   26.0   0.0   1.2e-08   8.7e-07     145     224 ..     507     587 ..     502     593 .. 0.75
   3 !   13.9   0.0     6e-05    0.0041     120     244 ..     838     962 ..     832     975 .. 0.72
   4 ?    0.7   0.1      0.63        43     271     353 ..     946    1028 ..     937    1036 .. 0.55

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.2
  TIGR03415  35 GlvlgvadasldveeGeilvlmGlsGsGkssllravn 71 
                G+ +  +++ +++ +G    l+G    Gk++l+r++ 
  MMETSP1061-20121228|243_1 420 GTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA 456
                55667889999999999999**************985 PP

  == domain 2    score: 26.0 bits;  conditional E-value: 1.2e-08
  TIGR03415 145 veeqlelvglaeWa....dkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                ++e l  vg++e      d+ v  lsGG + ++ lara+  +adill+deP   ld +  a ++  l +l    + t ++vshd
  MMETSP1061-20121228|243_1 507 IREVLGTVGFTEDGkakpDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDVINVAWVKTYLNSL---PNVTCIMVSHD 587
                556666666665540001445678********************************88777777655444...46788889998 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 6e-05
  TIGR03415 120 WrtveenvafGl.elsGvaka.errkrveeqlelvgla.eWadk.kvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGriv 244
                W    + v + l +l+G+  +    k+ve +l+  gla e+ ++ ++  lsGG + +v +a a+ ++  i+++deP   ld   r+ l   l +  +++   ++ +sh+ +    l  +  +m+ G++ 
  MMETSP1061-20121228|243_1 838 WEKAMKAVDLKLaQLAGMFVKpLSTKNVESHLNGCGLApEFGTHyRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLD---RESLG-GLAHAIETFDGGVIIISHNNEFVSTLCPETWVMDAGHLE 962
                6666666666663467765441456778888888888744554415789****************************9999...66664.466666777777777777777777777777777777765 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.63
  TIGR03415  271 lnvltakdlmreleale.kvddelvlskrkdtylekadkqveeaaaklalaataaeqeveslekasllvkpdtslrevleilkk 353 
                 ++ l+ ++ + +  +le k d +++l++ +++  +++ ++++  aa +++++ +  ++  + e+++l+ k + +++e +e+ ++
  MMETSP1061-20121228|243_1  946 VSTLCPETWVMDAGHLEtKGDADWMLKQDTKIDDQQQLQEMT-DAAGNKVEVQTGPKKLSKKEEKALIKKIKKKIKEGIELDTD 1028
                 456666654444444441455666665554444333334443.34444555555556667777777777888888888877654 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00046     0.032    2063    2103 ..     523     563 ..     429     599 .. 0.54
   2 !   12.0   0.0     5e-05    0.0035    1936    1996 ..     653     713 ..     645     727 .. 0.91
   3 !   11.7   0.0   6.1e-05    0.0043    2069    2153 ..     885     966 ..     862     979 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00046
  TIGR01257 2063 yadrlagtysggnkrklstaialigcpplvlldepttgmdp 2103
                   d    t sgg + kl+ a a++    ++lldept  +d 
  MMETSP1061-20121228|243_1  523 KPDHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDV 563 
                 34555666666666666666666666666666666666554 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 5e-05
  TIGR01257 1936 dilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgda 1996
                  ++++ + t  y+g++ p++  + v v     +  +g ngagk+t +k+l g+ +   gd 
  MMETSP1061-20121228|243_1  653 ALMKMANCTFTYPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDV 713 
                 47899999*********************************************99999985 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 6.1e-05
  TIGR01257 2069 gtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlaimvkgafqclgt 2153
                  + sgg+k k+  a a+   p +v+ldept  +d ++   l     +i   +  v++ sh  e + +lc    +m  g ++  g 
  MMETSP1061-20121228|243_1  885 SALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAH---AIETFDGGVIIISHNNEFVSTLCPETWVMDAGHLETKGD 966 
                 4679****************************99776655555...55566889999************9999999998877765 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.28        20      21      51 ..     428     459 ..     412     476 .. 0.77
   2 !    8.5   0.0     0.004      0.28     140     197 ..     529     586 ..     509     599 .. 0.77
   3 !   11.7   0.0   0.00042     0.029      28      59 ..     683     714 ..     652     728 .. 0.76
   4 !    7.5   0.0    0.0081      0.56     139     216 ..     884     961 ..     877     974 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.28
  TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarl 51 
                 ++ l  G+  g++G    Gk+tl+ ++a++ 
  MMETSP1061-20121228|243_1 428 TKMkLLRGRNYGLLGGNDCGKTTLMRSIANNQ 459
                44457789999*****************9864 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.004
  TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth 197
                +++sGG + +l +ar+++ +  ++++ ept  l v   a +   l +l    +++ i+v+h
  MMETSP1061-20121228|243_1 529 STLSGGWRMKLALARAMLQNADILLLdEPTNHLdVINVAWVKtYLNSL---PNVTCIMVSH 586
                689*****************9999998****99543333322233333...3577777777 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.00042
  TIGR02323  28 evlgivGesGsGkstllkalaarlladaGevt 59 
                  ++ +Ge G+Gkst++k l +++++++G+v 
  MMETSP1061-20121228|243_1 683 SRVACIGENGAGKSTMIKLLVGEIAPQEGDVW 714
                446778***********************985 PP

  == domain 4    score: 7.5 bits;  conditional E-value: 0.0081
  TIGR02323 139 paafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrv 216
                 +a+sGG + ++ ia ++  +p++v++ ept  l   +  l  l   +  ++  vii++h    +  l+  + vm  G++
  MMETSP1061-20121228|243_1 884 MSALSGGQKVKVVIAAAMWMQPHIVILdEPTNYLD--RESLGGLAHAIETFDGGVIIISHnNEFVSTLCPETWVMDAGHL 961
                5789**********************99***9884..2344456667777888888888876778888888888888876 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.067       4.6     466     500 ..     422     456 ..     404     458 .. 0.91
   2 ?    4.2   0.0     0.037       2.6     583     616 ..     530     563 ..     526     602 .. 0.74
   3 !    9.6   0.0   0.00086     0.059     454     525 ..     656     728 ..     631     735 .. 0.78
   4 !   10.1   0.0   0.00057      0.04     581     637 ..     884     940 ..     881     946 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.067
  TIGR00954 466 dvlieeLsfevksGnhlLiiGPnGcGKsslfRilg 500
                ++l+++ ++++  G++  ++G n cGK  l+R ++
  MMETSP1061-20121228|243_1 422 KILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIA 456
                688899999999********************887 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.037
  TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsv 616
                 LsgG + ++a+AR +       +LDE t+ + v
  MMETSP1061-20121228|243_1 530 TLSGGWRMKLALARAMLQNADILLLDEPTNHLDV 563
                69***************************98754 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00086
  TIGR00954 454 kfeniplvtP.egdvlieeLsfevksGnhlLiiGPnGcGKsslfRil.gelWPvygglltkpeegklFyvPqrP 525
                k+ n     P + +  + +++++v   + +  iG nG GKs + ++l ge+ P  g +  k ++ ++ yv q+ 
  MMETSP1061-20121228|243_1 656 KMANCTFTYPgNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLvGEIAPQEGDV-WKHPNARVAYVAQHA 728
                555555566633344566789999999***************9997649999977655.555677899999875 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 0.00057
  TIGR00954 581 kdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvs 637
                +  LsgG+k ++ +A  ++ +P+ ++LDE t+ +  +  + l +++  ++  ++ +s
  MMETSP1061-20121228|243_1 884 MSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHAIETFDGGVIIIS 940
                568****************************98766665555555555555555555 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0022      0.15     372     501 ..     440     562 ..     423     592 .. 0.76
   2 !   20.6   0.0   4.3e-07     3e-05     359     399 ..     674     714 ..     649     725 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0022
  TIGR01194 372 ivGenGcGkstliklllGlyipqeGel.lldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqd 501
                ++G+n cGk+tl++ +    +    ++  ++   v ++ +++  +l s+   dy   d  +      +  + + ++ l ++++ +  k +    +  + ls G r +lal  a l++  +lllde +   d
  MMETSP1061-20121228|243_1 440 LLGGNDCGKTTLMRSIANNQVEGFPDVtQVKTVFVEADIQGEQSHL-SC--VDYVAVDPAIA---ALNIGTSKIREVLGTVGFTEDGKAKPDH-A-VSTLSGGWRMKLALARAMLQNADILLLDEPTNHLD 562
                6799999999999988877665444441356777888888887776.44..49999999998...7778889999999999998888876433.3.357*************************9776555 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 4.3e-07
  TIGR01194 359 pidlriasGelvyivGenGcGkstliklllGlyipqeGell 399
                 i ++++    v  +GenG Gkst+ikll+G   pqeG++ 
  MMETSP1061-20121228|243_1 674 NITVQVSLSSRVACIGENGAGKSTMIKLLVGEIAPQEGDVW 714
                56667777778999************************985 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00067     0.046       5      30 ..     437     461 ..     434     490 .. 0.72
   2 ?    3.5   0.0      0.17        11       5      25 ..     684     704 ..     682     712 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00067
  TIGR00231   5 kivivGhvdvGKstLlnsllknkisi 30 
                + +++G  d+GK+tL+ s++ n++ +
  MMETSP1061-20121228|243_1 437 NYGLLGGNDCGKTTLMRSIANNQV-E 461
                66899*****************93.2 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.17
  TIGR00231   5 kivivGhvdvGKstLlnsllk 25 
                +++ +G+ ++GKst+++ l +
  MMETSP1061-20121228|243_1 684 RVACIGENGAGKSTMIKLLVG 704
                58889**********998876 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.12       8.6     749     816 ..     397     462 ..     374     473 .. 0.72
   2 ?    3.1   0.0     0.043         3     204     242 ..     525     563 ..     457     586 .. 0.78
   3 ?   -0.6   0.0      0.53        37     760     810 ..     655     703 ..     644     710 .. 0.70
   4 ?    3.2   0.0      0.04       2.8     210     242 ..     887     919 ..     883     934 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.12
  TIGR00956 749 veeekesgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttG 816
                  ++ + +++  e+ + t+++ +  +++ lL++ +  +  G+   L+G    GkttL+  +a+ +  G
  MMETSP1061-20121228|243_1 397 IPDDDDDDDDAEELCNCTFTLAY--GTKILLHNTKMKLLRGRNYGLLGGNDCGKTTLMRSIANNQVEG 462
                22232345677777777777665..67899999999999999999*************9999876665 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.043
  TIGR00956 204 ndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDs 242
                +  v  +sGG r ++++a +++ +a i+++D+ t  LD 
  MMETSP1061-20121228|243_1 525 DHAVSTLSGGWRMKLALARAMLQNADILLLDEPTNHLDV 563
                5568899***************************99995 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.53
  TIGR00956 760 fewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLa 810
                +++ + t++  + ++++  L +++  v   +  A +G+ GAGk t++  L 
  MMETSP1061-20121228|243_1 655 MKMANCTFT--YPGNTKPTLFNITVQVSLSSRVACIGENGAGKSTMIKLLV 703
                555555544..3455566666777777777778999999999999998875 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.04
  TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrGLDs 242
                +sGG++ +v ia ++ ++++i ++D+ t  LD 
  MMETSP1061-20121228|243_1 887 LSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDR 919
                688888888888888888888888888887774 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.026       1.8     366     387 ..     440     461 ..     423     491 .. 0.80
   2 ?   -1.2   0.0       1.5     1e+02     389     430 ..     544     585 ..     538     620 .. 0.79
   3 ?    4.4   0.0     0.029         2     350     386 ..     671     707 ..     656     714 .. 0.86
   4 ?   -3.5   0.0       6.8   4.8e+02     358     390 ..     772     804 ..     755     809 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.026
  TIGR03925 366 vlGdsesGktallraiaeevve 387
                 lG +++Gkt+l+r+ia++ ve
  MMETSP1061-20121228|243_1 440 LLGGNDCGKTTLMRSIANNQVE 461
                6999************987665 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.5
  TIGR03925 389 nspeearlvvvDyrrsllgavpeeylagyaassaaveeliae 430
                   ++a +++ D  +++l++++  +++ y  s  +v+  + +
  MMETSP1061-20121228|243_1 544 AMLQNADILLLDEPTNHLDVINVAWVKTYLNSLPNVTCIMVS 585
                5668999**********************9998888877665 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.029
  TIGR03925 350 dlapvaldfaeephllvlGdsesGktallraiaeevv 386
                 l  ++++++ ++ + ++G++++Gk+++++ ++ e++
  MMETSP1061-20121228|243_1 671 TLFNITVQVSLSSRVACIGENGAGKSTMIKLLVGEIA 707
                566788899999999*****************99986 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 6.8
  TIGR03925 358 faeephllvlGdsesGktallraiaeevverns 390
                ++++p  l + d+esGk + ++++++e+v   +
  MMETSP1061-20121228|243_1 772 LQKKPFELTFVDEESGKISKVKKVVSELVGGRK 804
                56788889999*********9999999986555 PP

>> TIGR02858  spore_III_AA: stage III sporulation protein AA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0041      0.28     118     154 ..     440     474 ..     421     489 .. 0.78
   2 ?    1.6   0.0      0.43        30     171     220 ..     879     928 ..     864     947 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0041
  TIGR02858 118 iisPPqsGkttllrdlaralstGisklglkglkvgiv 154
                +++   +Gkttl+r +a +  +G+   +++ +k++ v
  MMETSP1061-20121228|243_1 440 LLGGNDCGKTTLMRSIANNQVEGFP--DVTQVKTVFV 474
                678889*****************84..4555555544 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.43
  TIGR02858 171 dvGlrtdvldaCpkaeGlmllirslsPdvivvdeiGreedveallealna 220
                    r+  l +  k + ++ +   + P++++ de  ++ d e+l   ++a
  MMETSP1061-20121228|243_1 879 GTHYRMSALSGGQKVKVVIAAAMWMQPHIVILDEPTNYLDRESLGGLAHA 928
                455688888889999999999999**********9999998877443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1039 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       355  (0.0865431); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        72  (0.0175524); expected 4.1 (0.001)
Passed Fwd filter:                        59  (0.0143832); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              59  [number of targets reported over threshold]
# CPU time: 1.51u 0.58s 00:00:02.09 Elapsed: 00:00:01.54
# Mc/sec: 890.50
//
Query:       MMETSP1061-20121228|258_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 664.20
//
Query:       MMETSP1061-20121228|261_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.95    7.3  10.6        5.6    4.8   7.4    1.9  1  TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
        6.5    5.2  11.3    7.3e+02   -1.4   7.8    2.5  1  TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family


Domain annotation for each model (and alignments):
>> TIGR03750  conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   7.4    0.0027       5.6      29      58 ..      13      42 ..       1      54 [] 0.40

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0027
  TIGR03750 29 vglvlglvlglllalllgswaliptgallg 58
               +g++lg++lgl l ++lg+++ +  g++lg
  MMETSP1061-20121228|261_1 13 LGFMLGFILGLKLGFMLGFMLGLKLGFILG 42
               333333333333333333333333333333 PP

>> TIGR01726  HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   7.8      0.35   7.3e+02      28      28 ..      27      27 ..       1      54 [] 0.48

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.35
  TIGR01726 28 l 28
               +
  MMETSP1061-20121228|261_1 27 F 27
               1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.23s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 229.92
//
Query:       MMETSP1061-20121228|260_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       391  (0.0953194); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1126.98
//
Query:       MMETSP1061-20121228|264_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.9    6.6  13.1       0.46    8.6   5.1    2.6  3  TIGR02926 AhaH: ATP synthase archaeal, H subunit


Domain annotation for each model (and alignments):
>> TIGR02926  AhaH: ATP synthase archaeal, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.1   0.00011      0.46      23      73 ..      11      59 ..       4      69 .. 0.81
   2 ?    0.6   1.2     0.035   1.4e+02      18      37 ..      52      71 ..      50      92 .. 0.80
   3 ?   -1.0   0.1      0.11   4.5e+02      34      53 ..     134     153 ..     112     156 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00011
  TIGR02926 23 kqriaeAreeAkelleeaeeeAeklkeeileeaeeeiekEaekIleegeke 73
               + +++eA e+A+e++ + e++ + +k+  ++ea+  i+ E  k  +e+  e
  MMETSP1061-20121228|264_1 11 NFILQEAHEKANEIRVKTEHDFNLEKQTLVHEAKLSIQDEFAK--KEKHHE 59
               5689*********************************999665..333334 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.035
  TIGR02926 18 AkeerkqriaeAreeAkell 37
               Ak+e+++ i+e +++++e+ 
  MMETSP1061-20121228|264_1 52 AKKEKHHEIQERIARSAEIG 71
               88899999999999998885 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.11
  TIGR02926  34 kelleeaeeeAeklkeeile 53 
                +  +e++  +A+k+  ei++
  MMETSP1061-20121228|264_1 134 AATVEKVLPDAVKEYIEIMK 153
                33345555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.25s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 711.45
//
Query:       MMETSP1061-20121228|257_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1555.00
//
Query:       MMETSP1061-20121228|268_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-07   27.6   5.4      5e-05   20.8   0.0    3.8  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0   0.00075       3.1      13      25 ..       5      17 ..       4      18 .. 0.84
   2 !   20.8   0.0   1.2e-08     5e-05       1      25 [.      19      42 ..      19      43 .. 0.96
   3 ?    0.5   0.1     0.027   1.1e+02       1       9 [.      44      52 ..      44      53 .. 0.87
   4 ?    0.5   0.0     0.029   1.2e+02      21      24 ..      67      70 ..      67      72 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00075
  TIGR02167 13 lSnfdTsnVTnMs 25
               + ++ T++VT M 
  MMETSP1061-20121228|268_1  5 IGSWSTGKVTLMF 17
               789*******886 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 1.2e-08
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
               MF+g +++++ +++++d s+VTn+ 
  MMETSP1061-20121228|268_1 19 MFQGATAFNQ-PIESWDFSSVTNLE 42
               **********.************86 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.027
  TIGR02167  1 MFsgCssLt 9 
               MF g s+++
  MMETSP1061-20121228|268_1 44 MFKGASAFN 52
               9***99987 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.029
  TIGR02167 21 VTnM 24
               VT+M
  MMETSP1061-20121228|268_1 67 VTDM 70
               9*** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 281.35
//
Query:       MMETSP1061-20121228|273_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.20s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1061-20121228|269_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0098   13.2   0.6      0.021   12.1   0.4    1.5  1  TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI


Domain annotation for each model (and alignments):
>> TIGR02872  spore_ytvI: sporulation integral membrane protein YtvI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.4   5.2e-06     0.021      10      75 ..     221     288 ..     218     294 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.2e-06
  TIGR02872  10 vilvliiyfalplllPfviAlilali..lepvvefLekklklkralavlivlllfliiivllltilvt 75 
                +++++ +y++  l+ Pf +A+++ +   +e + +++ek++  +r+ a+ +v+++ +++ +++ +  vt
  MMETSP1061-20121228|269_1 221 LAAYASLYVVAALIRPFRVAFAIGIThkMEHFLQYVEKRIGCTRTNAIGMVFAFGIVLWLTCCAAGVT 288
                566777888899999****999876544999**************************99999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1594.43
//
Query:       MMETSP1061-20121228|270_1  [L=766]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 2592.40
//
Query:       MMETSP1061-20121228|274_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 778.28
//
Query:       MMETSP1061-20121228|280_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-05   21.5   0.0    2.7e-05   21.4   0.0    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.6e-09   2.7e-05       1      70 [.      14      81 ..      14      83 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 6.6e-09
  TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDd.ktvkeykikekdfv 70
               +++ +Kt  ++   + ++pd+t+  +K+++e++ g   ++ + q+  + Gk L+D+ +t+++ +i+ +d v
  MMETSP1061-20121228|280_1 14 MEIKVKTPDGRVADLVVNPDDTIEDVKRQVEDQLG---IPAEDQLPAFRGKPLNDNnSTLEQNGINHGDIV 81
               78899999999999*********************...****************97368888899988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 346.47
//
Query:       MMETSP1061-20121228|279_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   15.9   0.0       0.11    9.4   0.0    2.4  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0013       5.3     169     198 ..     271     300 ..     254     315 .. 0.71
   2 !    9.4   0.0   2.7e-05      0.11       8      71 ..     352     423 ..     345     434 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0013
  TIGR03866 169 PraaeftadgkelwvsseigGtvsvidvat 198
                Pr+ +f+ + +  +v  e++ tv+v++v+ 
  MMETSP1061-20121228|279_1 271 PRYLDFHPEFNIAYVVNELSSTVAVFEVDC 300
                666677777777777777777777766654 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 2.7e-05
  TIGR03866   8 aaaekiyvsnekdntisvidletl.......evvkt.lkvGerPrGitlskdgkllyvcasdsdavqvldae 71 
                +  + + vsn   ++i+v  +++        + v    + Ge Pr  ++ + g+ l+v+  d d++ v++ +
  MMETSP1061-20121228|279_1 352 KSGRFVIVSNRGHQSITVFRVKKKgskrgelQAVGCfHTRGETPRHFQFDHSGQYLLVANQDTDSIAVFNFN 423
                555667778888888888766543111111122222135689999999999999999999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 2165.45
//
Query:       MMETSP1061-20121228|281_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 755.64
//
Query:       MMETSP1061-20121228|276_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-50  169.6   0.4    1.7e-50  168.9   0.3    1.3  1  TIGR01077 L13_A_E: ribosomal protein L13
    1.3e-06   26.1   0.4    8.1e-05   20.3   0.3    2.4  1  TIGR01066 rplM_bact: ribosomal protein L13


Domain annotation for each model (and alignments):
>> TIGR01077  L13_A_E: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.9   0.3   8.2e-54   1.7e-50       2     140 ..       8     148 ..       7     149 .. 0.99

  Alignments for each domain:
  == domain 1    score: 168.9 bits;  conditional E-value: 8.2e-54
  TIGR01077   2 vidaeglilGrLaskvakrlLeGekvvvvnaekivisGdkevvvekYkeklekkkktnprrgPffprapdrilkrtvrgmlpkkkarGrealerlkvyvGiPkeldkkklvkveeal.vsrlskt.kyvtlgelakelGak 140
                vid++ ++lGrLas+vak+lL+G+k+v+v+++++visG   ++  kY ++++k+++tnp +gP++++ap  +++rt+rgm+ +k+arG++al rl  ++GiP ++dk+++v+v++al ++rl++  ky+ +g+la ++G+k
  MMETSP1061-20121228|276_1   8 VIDGRDHLLGRLASIVAKELLAGQKIVIVRCDEMVISGSLVRNRVKYAQFRNKAMNTNPGKGPYHYKAPAMMVWRTIRGMVHQKTARGQAALSRLSTFDGIPAPYDKQQRVVVPAALrTMRLKQGrKYTVVGDLADSVGWK 148
                9********************************************************************************************************************99******9**************9 PP

>> TIGR01066  rplM_bact: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.3     4e-08   8.1e-05      15     137 ..       7     118 ..       2     122 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4e-08
  TIGR01066  15 yvvdaagktLGrlasevakllrGkhkatytPnvdvGDyviviNaekvkltgkkleqkvyyrhsgyvgglkektlkelle.kkpekvlekAvkgmlp.knklgrkllkklkvykgsehpheaqkpi 137
                 v+d +++ LGrlas vak l              G  ++++ +++++++g+  +++v y + +    ++++  k   + k+p+ ++   ++gm+  k+  g++ l++l  ++g   p+  q+ +
  MMETSP1061-20121228|276_1   7 KVIDGRDHLLGRLASIVAKELL------------AGQKIVIVRCDEMVISGSLVRNRVKYAQFR-NKAMNTNPGKGPYHyKAPAMMVWRTIRGMVHqKTARGQAALSRLSTFDGIPAPYDKQQRV 118
                6899999999999999998765............57889***************9998777744.455666666665555***************7255668899*********99998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 680.25
//
Query:       MMETSP1061-20121228|282_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.3   0.0       0.14    9.5   0.0    2.1  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0015   14.3   0.0       0.07    8.8   0.0    2.0  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   6.7e-05      0.14      61      94 ..      60      93 ..      58     104 .. 0.87
   2 !    7.7   0.0   0.00024      0.48     135     165 ..     134     164 ..     122     187 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 6.7e-05
  TIGR02521 61 dpkdadanlalAlyyqqlgelekAeesfrkAltl 94
               dp+  +   +lAl+++q+g++e A  +f+k+++l
  MMETSP1061-20121228|282_1 60 DPATFREAEVLALLLMQEGRHEDAITAFQKGMKL 93
               5666667789*********************997 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00024
  TIGR02521 135 arsyeNaglcalkagdtekaekyltralkid 165
                +++y N++ c  ++g++e+a   l++a +  
  MMETSP1061-20121228|282_1 134 QSAYYNMACCNSRLGNVEEAVVNLEKAFQSG 164
                6899**********************99865 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0     0.001       2.1     605     629 ..      68      92 ..       4     110 .. 0.67
   2 !    8.8   0.0   3.4e-05      0.07      52      92 ..     130     170 ..     128     197 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.001
  TIGR02917 605 ellgraqlaakdlkkavesfkklle 629
                e+l+ ++++++ +++a+ +f+k ++
  MMETSP1061-20121228|282_1  68 EVLALLLMQEGRHEDAITAFQKGMK 92 
                3344444444444444444444333 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 3.4e-05
  TIGR02917  52 dpndaeaRflLgkiyleqGdaaaAekeLrkAlslgyskeqv 92 
                +++ + a + ++  ++++G++++A+++L+kA + g +k ++
  MMETSP1061-20121228|282_1 130 NNELQSAYYNMACCNSRLGNVEEAVVNLEKAFQSGFDKYET 170
                5678999***************************9988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 971.06
//
Query:       MMETSP1061-20121228|284_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 801.04
//
Query:       MMETSP1061-20121228|277_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.21s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1130.83
//
Query:       MMETSP1061-20121228|286_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 687.25
//
Query:       MMETSP1061-20121228|290_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-13   45.5   0.0    0.00096   16.7   0.0    3.1  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat
  ------ inclusion threshold ------
      0.018   11.9   0.0       0.02   11.8   0.0    1.0  1  TIGR03298 argP: transcriptional regulator, ArgP family


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.7e-07   0.00096      13      25 ..       1      13 [.       1      14 [. 0.88
   2 !   16.5   0.0   5.3e-07    0.0011       2      26 .]      16      39 ..      15      39 .. 0.94
   3 !    9.3   0.0    0.0001       0.2       1      22 [.      40      60 ..      40      61 .] 0.96

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.7e-07
  TIGR02167 13 lSnfdTsnVTnMs 25
               + +++T++VT M 
  MMETSP1061-20121228|290_1  1 IGSWNTASVTHMG 13
               569*********6 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 5.3e-07
  TIGR02167  2 FsgCssLtsLDlSnfdTsnVTnMss 26
               F g s++++ ++ +++T +V  M +
  MMETSP1061-20121228|290_1 16 FHGASAFNQ-PIGSWNTQKVGYMQY 39
               99*******.*************86 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0001
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVT 22
               MF+g  s+++ ++ ++ T++VT
  MMETSP1061-20121228|290_1 40 MFQGAFSFNQ-PIGSWSTGKVT 60
               9*********.**********9 PP

>> TIGR03298  argP: transcriptional regulator, ArgP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.8e-06      0.02     130     173 ..       6      49 ..       4      57 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.8e-06
  TIGR03298 130 tlelLreGevlgavtaeakpvkgcrvekLGamrylavaspafae 173
                t++  + G+v    +a ++p+ +++++k G m+y++  + +f +
  MMETSP1061-20121228|290_1   6 TASVTHMGAVFHGASAFNQPIGSWNTQKVGYMQYMFQGAFSFNQ 49 
                7778889****99**********************988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 383.40
//
Query:       MMETSP1061-20121228|283_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 2100.51
//
Query:       MMETSP1061-20121228|289_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 1020.38
//
Query:       MMETSP1061-20121228|293_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 600.34
//
Query:       MMETSP1061-20121228|292_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 1298.89
//
Query:       MMETSP1061-20121228|296_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 1079.20
//
Query:       MMETSP1061-20121228|294_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 672.72
//
Query:       MMETSP1061-20121228|295_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-12   43.0   0.0    5.1e-11   40.6   0.0    1.8  1  TIGR00862 O-ClC: intracellular chloride channel protein


Domain annotation for each model (and alignments):
>> TIGR00862  O-ClC: intracellular chloride channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.2e-14   5.1e-11       4     229 ..      45     267 ..      42     271 .] 0.79

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 1.2e-14
  TIGR00862   4 elfvkagsdgesigncpfsqrlfmilwlkgvvfnvttv.dlkrkpeelknlapgtkppflvynkevktdvnkieefleevlappkypklaakhkesn...tagld.ifakfsayiknskkeanealekgllkalkklddylnsplpeeidedsaedekvsrrkfldgd.eltladcnllpklhivkvvakkyrdf....dipaeltgvwrylknayareeftntcpedkeielaya 229
                 l++ka  dg s g+cpf+  + +il  k + ++v        kp+ l +   g k+p l + ke   + n i  +l+  + p    + ++ +k s    +a +d  f   + y+k++  +a +  e +   +l++l   l s l e + ++ ++         ldg  ++ + dc l+p+l  + v   ++++     d+  e+  v+ yl+ a  re f +t  + + ie  + 
  MMETSP1061-20121228|295_1  45 TLYLKAAEDGTSAGDCPFAHYVRLILEEKNLPYSVRPCaSADDKPSWLLEHYEG-KMPCLRHRKEAYVESNVIAAYLDYFF-PFDGVQNTPERKASTaaaEAAMDgFFPGVAGYLKDTDSDASAGAEAS--EKLENLRSKL-SGLNEHLSSNPGN--------NLDGTsHFGILDCRLVPQLYHLSVGIERFKGAhgkpDLATEFPAVHDYLQRAMDRESFQKTQYSPDTIEWGWG 267
                79*********************************8651677899999998876.7899******************9765.5555666666665541114567635678899********99998876..4566666655.3466666555544........46774268999****************9996433448999*********************999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 1192.30
//
Query:       MMETSP1061-20121228|298_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.23s 00:00:00.52 Elapsed: 00:00:00.48
# Mc/sec: 1270.40
//
Query:       MMETSP1061-20121228|297_1  [L=1035]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1035 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       338  (0.0823988); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.61
# Mc/sec: 2239.49
//
Query:       MMETSP1061-20121228|301_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-20   69.6   6.8    0.00019   18.9   0.0    5.9  6  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat
  ------ inclusion threshold ------
      0.011   13.0   0.1        1.3    6.2   0.0    2.4  3  TIGR00167 cbbA: ketose-bisphosphate aldolases


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.5     0.038        78      20      26 .]       9      15 ..       1      15 [. 0.85
   2 !   11.9   0.0   1.5e-05      0.03       1      25 [.      16      39 ..      16      40 .. 0.91
   3 !   18.9   0.1   9.5e-08    0.0002       2      26 .]      42      65 ..      41      65 .. 0.93
   4 !   18.9   0.0   9.4e-08   0.00019       1      25 [.      66      89 ..      66      90 .. 0.96
   5 !   17.1   0.1   3.6e-07   0.00073       1      22 [.      91     111 ..      91     118 .. 0.96
   6 ?   -2.8   0.0      0.59   1.2e+03      13      20 ..     127     134 ..     126     135 .. 0.68

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.038
  TIGR02167 20 nVTnMss 26
               +VT M++
  MMETSP1061-20121228|301_1  9 SVTSMTN 15
               8****86 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 1.5e-05
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
               +F++ s++++ ++  +++s+V  M 
  MMETSP1061-20121228|301_1 16 LFAHASAFNQ-PIGDWNVSSVQKMQ 39
               59999*****.**********9996 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 9.5e-08
  TIGR02167  2 FsgCssLtsLDlSnfdTsnVTnMss 26
               F g +++++ +lS++++++ T+M++
  MMETSP1061-20121228|301_1 42 FLGATAFNQ-PLSGWNVGSATTMTN 65
               8899999**.*************96 PP

  == domain 4    score: 18.9 bits;  conditional E-value: 9.4e-08
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
               MF++ s+++  ++ n+++s+V  M 
  MMETSP1061-20121228|301_1 66 MFRDASAFNH-PIGNWNVSSVRRMQ 89
               9*********.************97 PP

  == domain 5    score: 17.1 bits;  conditional E-value: 3.6e-07
  TIGR02167   1 MFsgCssLtsLDlSnfdTsnVT 22 
                MF++ s++++ +lS +d++ VT
  MMETSP1061-20121228|301_1  91 MFRSASAFNQ-PLSDWDVARVT 111
                **********.**********9 PP

  == domain 6    score: -2.8 bits;  conditional E-value: 0.59
  TIGR02167  13 lSnfdTsn 20 
                l n+ +sn
  MMETSP1061-20121228|301_1 127 LGNWSVSN 134
                67886666 PP

>> TIGR00167  cbbA: ketose-bisphosphate aldolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0028       5.8       3      44 ..      10      51 ..       8      53 .. 0.91
   2 ?    6.2   0.0   0.00061       1.3       5      45 ..      62     102 ..      59     104 .. 0.93
   3 ?   -1.3   0.0      0.12   2.4e+02     166     186 ..     108     128 ..      98     135 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0028
  TIGR00167  3 lvdvkellekakeegyaipaiNvvnlesikavleaaeeaksP 44
               ++++++l+++a   +  i+  Nv +++ +++ +  a+  + P
  MMETSP1061-20121228|301_1 10 VTSMTNLFAHASAFNQPIGDWNVSSVQKMQGLFLGATAFNQP 51
               6789***************************99999888887 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00061
  TIGR00167   5 dvkellekakeegyaipaiNvvnlesikavleaaeeaksPv 45 
                 +++++++a   ++ i++ Nv ++  +++++  a+  + P+
  MMETSP1061-20121228|301_1  62 TMTNMFRDASAFNHPIGNWNVSSVRRMQGMFRSASAFNQPL 102
                6899******************************9999985 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.12
  TIGR00167 166 kelvkksqvdalAaaiGnvHG 186
                ++++++++++alA a+ +  G
  MMETSP1061-20121228|301_1 108 ARVTSATNMFALAIAFDQPLG 128
                57788999*****99966555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 628.09
//
Query:       MMETSP1061-20121228|300_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-44  148.9   0.0    3.1e-44  148.6   0.0    1.1  1  TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
  ------ inclusion threshold ------
      0.019   12.8   0.0      0.032   12.0   0.0    1.4  1  TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain
      0.032   11.7   0.0      0.079   10.4   0.0    1.6  2  TIGR02129 hisA_euk: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase


Domain annotation for each model (and alignments):
>> TIGR01182  eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.6   0.0   2.3e-47   3.1e-44       5     202 ..      44     241 ..      40     243 .. 0.96

  Alignments for each domain:
  == domain 1    score: 148.6 bits;  conditional E-value: 2.3e-47
  TIGR01182   5 lkeakivpViaiddveealelakalvegGlrvlEvTlrteaaleairalrkevp.evligaGTvlsaeqleeaeeaGAqFvvsPgleeelvklakekgipliPGvatpseilkalelGlsalKlFPaevvggvkmlkalagpfaqvkfvPTGGislanladylalpnvlvvggswlvpkdliaakdwdeitelareale 202
                + +++  +V+++ + e+  + ++a+++gG +++E Tl+t++ l+ +   r+++  +v++g GT+l++e++++a+eaG +F+++P + +++++ +ke++i  +PG +tp+e+++a+++G+   KlFP  v gg+  +ka++  ++ +++ PT G++l+n+ dyl++++  v++ + l+++++iaa+d+d+i++ a ++++
  MMETSP1061-20121228|300_1  44 FAAIRACAVLRTPTSESCPKAMQAAIDGGFKIVEFTLTTPDCLKHLSDCRSKYDgDVMVGCGTILTPEDAANAMEAGSEFIITPVMLPDVIEWCKERNIVCVPGCQTPTEMVTAYRHGAPLQKLFPG-VAGGPGWVKAVSSALPFLSINPTSGVDLDNAGDYLKMGAASVGLVAPLFDQEAIAAGDFDKIAQNAAKVMA 241
                6678899*********************************************999***********************************************************************6.7899**********************************************************999888765 PP

>> TIGR00640  acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   2.4e-05     0.032      70     120 ..      82     134 ..      49     143 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.4e-05
  TIGR00640  70 vPelieeleklGre...dilvvvGGviPeedveelkeaGvaevfgPGtvlaeai 120
                +P  +++l++   +   d++v +G ++ +ed+++  eaG   + +P  +l+++i
  MMETSP1061-20121228|300_1  82 TPDCLKHLSDCRSKydgDVMVGCGTILTPEDAANAMEAGSEFIITPV-MLPDVI 134
                68888888887776778***********************9999994.455555 PP

>> TIGR02129  hisA_euk: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.51     7e+02      74     109 ..      94     130 ..      80     143 .. 0.65
   2 ?   10.4   0.0   5.8e-05     0.079      83     127 ..     193     237 ..     178     243 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.51
  TIGR02129  74 saypgalqvGGG..inaenakeyldegaskvivtswlf 109
                s+y g + vG G  +  e+a + +++g s+ i+t  ++
  MMETSP1061-20121228|300_1  94 SKYDGDVMVGCGtiLTPEDAANAMEAG-SEFIITPVML 130
                556666667766222445666777664.5666665555 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 5.8e-05
  TIGR02129  83 GGGinaenakeyldegaskvivtswlftdekldlerlkelvklvG 127
                  G++ +na +yl+ ga+ v + + lf +e +    ++++++   
  MMETSP1061-20121228|300_1 193 TSGVDLDNAGDYLKMGAASVGLVAPLFDQEAIAAGDFDKIAQNAA 237
                479****************************99988888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 927.59
//
Query:       MMETSP1061-20121228|303_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 1514.73
//
Query:       MMETSP1061-20121228|304_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 916.16
//
Query:       MMETSP1061-20121228|305_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.51
# Mc/sec: 921.34
//
Query:       MMETSP1061-20121228|302_1  [L=1111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.27s 00:00:00.90 Elapsed: 00:00:00.67
# Mc/sec: 2188.66
//
Query:       MMETSP1061-20121228|306_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 386.19
//
Query:       MMETSP1061-20121228|308_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 464.83
//
Query:       MMETSP1061-20121228|309_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 1109.69
//
Query:       MMETSP1061-20121228|307_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 863.93
//
Query:       MMETSP1061-20121228|311_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 491.29
//
Query:       MMETSP1061-20121228|310_1  [L=967]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-145  483.1   3.4   4.5e-145  482.2   2.3    1.4  1  TIGR00491 aIF-2: translation initiation factor aIF-2
    3.2e-46  156.1  19.0      4e-39  132.6   0.2    3.7  3  TIGR00487 IF-2: translation initiation factor IF-2
    8.7e-19   65.7   0.1    8.7e-19   65.7   0.1    2.1  2  TIGR00231 small_GTP: small GTP-binding protein domain
    6.2e-14   49.4   0.6    6.2e-14   49.4   0.4    4.2  3  TIGR00475 selB: selenocysteine-specific translation elongation factor
    7.9e-13   45.4   0.1    8.1e-12   42.1   0.0    2.1  2  TIGR01393 lepA: GTP-binding protein LepA
    1.2e-10   38.3   0.0    2.1e-10   37.5   0.0    1.3  1  TIGR00503 prfC: peptide chain release factor 3
    1.6e-10   37.6   0.2    7.9e-10   35.4   0.1    2.0  2  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    1.9e-09   34.1   0.0      3e-09   33.4   0.0    1.2  1  TIGR00484 EF-G: translation elongation factor G
    2.3e-09   34.8   0.1    7.1e-09   33.2   0.0    1.8  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    9.8e-09   32.5   0.0    2.1e-07   28.2   0.0    2.3  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    1.3e-07   28.5   0.1    3.5e-06   23.8   0.0    2.3  2  TIGR00485 EF-Tu: translation elongation factor Tu
    3.1e-07   27.0   4.9    2.5e-06   24.1   0.1    3.4  3  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    1.8e-06   25.0   0.1     0.0001   19.3   0.0    3.0  3  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    3.1e-06   23.4   0.0    5.7e-06   22.5   0.0    1.3  1  TIGR00490 aEF-2: translation elongation factor aEF-2
    0.00017   18.3   0.0    0.00017   18.3   0.0    2.8  3  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
     0.0016   16.0   0.0     0.0016   16.0   0.0    2.4  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  482.2   2.3  1.8e-147  4.5e-145       1     580 [.     368     961 ..     368     966 .. 0.93

  Alignments for each domain:
  == domain 1    score: 482.2 bits;  conditional E-value: 1.8e-147
  TIGR00491   1 klrsPivavlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvikrlcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidripGwkskegkfilesnekqeekvkltldekvlelviklnelGfdaerfdrvqd....vtktvaiiPvsavtGeGipelllilaGlaqkyledrlklevegkakGtilevkeekGlGvtidaiiydGilkkgdilvvalkddvlvtrvkallkPkPldemreerdkfkkvdevtaaagvkiaapeldkviagspi.rvvskekiekakeevlkeveei..kievddeGilvkadtlGslealvnelrkag...vkikkaevGdvskkdvvevasakqe.nklygaivafnvkilpeaekeiekydikvfldniiyklvedfeewikkeeerkkrkeleklikPakirilpdlifrqkdPaivGvevlaGvlrvgaplike..dGekvGevreikdrgenvkeakagkavsiaidd....rvvlkrkvdegdelyvavpeshvrelkeklldrlredekeallryl 580
                +lr+Pi +++Ghvd Gkt lldkirkt+v + eaGgitq+iGa+    + ++  +++l  + k d+k+PG+lvidtPGhe f++lr rG +l d+ailvvd+  G+++qt e++n+lr+ ++Pfvva nkidr   wk+ ++ +i ++ + qee +  +  ++  +   +l+e+G +++ +  + d     +  v ++P sa+tGeG+ ++l++l  ++q+ + +++     ++   t+levk   GlG+t+d+++ +G l++gd+ v  + d+++vt+++ ll P+P +emr++++ + + +e+  a gvk++ + ldkv+ag+p+ +v ++++ e++k ev++++ ++  ++++d +G+lv+a tlG+leal++ lr ++   +++    +G + k+dv+++++++++ ++++ +i+af+  i  ea++++ + ++++++ +iiy+l ++f++++ +   +++++     + P++i+ilp+ +f qkdP+ivGve++ G+l+vg+pl  +   G +vG+v +i+ +g++ ++a++g++v+i i +     ++++r+ d  + ly  +    +  lk ++ d l++++ +++ ++ 
  MMETSP1061-20121228|310_1 368 NLRCPITVIMGHVDTGKTKLLDKIRKTNVQEGEAGGITQQIGATYFEQKTLQAQTEKLNATEKFDIKVPGMLVIDTPGHESFANLRSRGSSLCDVAILVVDLMHGLEQQTIESLNMLRKKNVPFVVALNKIDRCYAWKTCKDAPIRDALKEQEEGTLSEFRSRAADAKLQLAEQGVNSNIYWEMGDddwsNSDFVPLVPTSAITGEGVQDILMLLCQISQRKIWQNIMWC--ANLEATVLEVKAIDGLGMTVDVLVVNGYLREGDKAVFCTLDGPIVTEIRGLLTPPPSREMRVKSEYI-HHKEIKGALGVKVIGNGLDKVMAGTPVmVVGPNDEEEDIKAEVMSDLANLesQLSTDRVGVLVQASTLGALEALLQFLRVETdppIPVSAIGIGTIHKRDVTKISIMNEKgHPEFATILAFDCDIEKEAREHAAEMGVRIMTADIIYHLFDQFTRFMDELTAKRREEAAAVAVFPSIIKILPQHVFNQKDPIIVGVEIVDGILKVGTPLCVPalGGLHVGKVTSIEMNGKEQNTARKGQSVAIKIVNdsnpNITYGRQFDSSHSLYSTLSRASIDALKLNFKDALEKEDWRLVVKLK 961
                79***************************************************************************************************************************************************99999999999999999999************999763332345799***************************9999887..56677********************************************************987665.56799*********************956669999***********986522788999********************97644449999999*************9988736899**********************************************99999999999*************************************9763369***************************9844233369***********************************999887765 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   3.2       3.1   7.9e+02      34      84 ..     110     160 ..     106     185 .. 0.68
   2 !  132.6   0.2   1.6e-41     4e-39      61     200 ..     347     501 ..     285     509 .. 0.77
   3 !   34.4   1.0   8.6e-12   2.2e-09     226     490 ..     563     832 ..     547     924 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 3.1
  TIGR00487  34 llGvmvtinqvldketielvaeelgvkvevrvtleeeeveeeeedsedkke 84 
                + G mv+     ++e+++ +a e + + +   + e +e+eee + +e+k++
  MMETSP1061-20121228|310_1 110 ARGKMVQERLRKQQEEAARIAAEEEAERQRIAEIERKEAEEERRKQEEKER 160
                567888877777777777777766666666666666666666664333222 PP

  == domain 2    score: 132.6 bits;  conditional E-value: 1.6e-41
  TIGR00487  61 vevrvt.leeeeveeeeedsedkkeerpPvvtimGhvDhGktsLLdsirktkvaegeaGGitqhiGayqvekedkk.................kitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkp 200
                +e +++ +eee+++       +  + r P+  imGhvD Gkt+LLd+irkt+v+egeaGGitq+iGa   e++  +                  +  +DtPGhe+f+++r+rG+   D+++lvv    G+++qtie+++  ++ nvP +va+nkiD+ 
  MMETSP1061-20121228|310_1 347 MEGKKKrEEEEKANLAA---RSPDNLRCPITVIMGHVDTGKTKLLDKIRKTNVQEGEAGGITQQIGATYFEQKTLQaqteklnatekfdikvpGMLVIDTPGHESFANLRSRGSSLCDVAILVVDLMHGLEQQTIESLNMLRKKNVPFVVALNKIDRC 501
                22222202222223333...3445779****************************************776654333334457777778775555678***********************************************************85 PP

  == domain 3    score: 34.4 bits;  conditional E-value: 8.6e-12
  TIGR00487 226 ifvpvsalkgkgideLldaiLlqseveelkank.nkqakgvvieakldkgrGpvatvlvqeGtLkvGDivvv....gaayGkvramidekGksvkeagP..siaveilGlsevPaaGdelivvkdekkarlvaekraeklkqkklsksvkvkleelseqikegelkelniilkaDvqGsleaiknslekleveevkvkvihsgvGeitetDislasasn.......aiiigfnvrldakakkvaeaenvdlrkysviyklideikavlkGlldPeleee 490
                 +vp sa +g+g++++l  +  +s+ +  + +   ++ +++v+e+k   g G    vlv +G L+ GD  v     g     +r +     ++  +++       ei G   v + G+ l  v        v+ + +e     + + +v + l +l +q++ +    + ++++a + G+lea+ + l+  +   + v+ i  g+G+i   D++ +s  n       a i++f+   +++a++ a + +v + + ++iy+l d+    ++ l     ee 
  MMETSP1061-20121228|310_1 563 PLVPTSAITGEGVQDILMLLCQISQRKIWQNIMwCANLEATVLEVKAIDGLGMTVDVLVVNGYLREGDKAVFctldGPIVTEIRGLLTPPPSREMRVKSeyIHHKEIKGALGVKVIGNGLDKVMAGTPVMVVGPNDEE----EDIKAEVMSDLANLESQLSTD---RVGVLVQASTLGALEALLQFLRVETDPPIPVSAI--GIGTIHKRDVTKISIMNekghpefATILAFDCDIEKEAREHAAEMGVRIMTADIIYHLFDQFTRFMDELTAKRREEA 832
                47999*********99855554555554444431356689****************************8776123355566778776654443333333013457899999999999999999988888888877666....333344455788888888765...67899**************998766667777766..7899999998766544323345569*************************************999987765555543 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.3       7.5   1.9e+03      95     111 ..     160     175 ..     157     179 .. 0.80
   2 !   65.7   0.1   3.4e-21   8.7e-19       7     126 ..     375     502 ..     370     522 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 7.5
  TIGR00231  95 eglekqtkeiiheakkk 111
                 +++kq+++i+++++ +
  MMETSP1061-20121228|310_1 160 RKKQKQKEKIERQKR-E 175
                578899999999998.4 PP

  == domain 2    score: 65.7 bits;  conditional E-value: 3.4e-21
  TIGR00231   7 vivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd 126
                vi+Ghvd GK+ Ll++++k+++ + e+  g+t+++ ++ +e++  +                  + ++DT+G+e f        + ++r  + +d++ilv+d+  gle+qt e  + ++kk+vp+++++nKiD   
  MMETSP1061-20121228|310_1 375 VIMGHVDTGKTKLLDKIRKTNVQEGEA-GGITQQIGATYFEQKTLQaqteklnatekfdikvPGMLVIDTPGHESF-------ANLRSRGSSLCDVAILVVDLMHGLEQQTIESLNMLRKKNVPFVVALNKIDRCY 502
                8********************888888.9***************99***********9966555679*********.......7777788888999*****************9999999*************866 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.4   2.4e-16   6.2e-14       3     116 ..     374     501 ..     373     519 .. 0.82
   2 !    4.7   0.0    0.0085       2.2     143     211 ..     564     634 ..     552     646 .. 0.86
   3 ?    0.6   0.0      0.15        37     194     250 ..     858     916 ..     837     943 .. 0.81

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 2.4e-16
  TIGR00475   3 iataGHvDHGKttLlkaltgidadrlPeEkKRGltiDlGyaylpled................kvlg..liDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrv 116
                 +++GHvD GKt+Ll ++  ++ +   e +  G+t  +G +y++++                 kv+g  +iD PGHe f +    g +  d a+Lvvd   G+  qt+E L +l++ +++  +v+l+K+Dr 
  MMETSP1061-20121228|310_1 374 TVIMGHVDTGKTKLLDKIRKTNVQ---EGEAGGITQQIGATYFEQKTlqaqteklnatekfdiKVPGmlVIDTPGHESFANLRSRGSSLCDVAILVVDLMHGLEQQTIESLNMLRKKNVP-FVVALNKIDRC 501
                5789***********999888765...56789**********98753322221121222222345543369*********99999***********************************.9********96 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0085
  TIGR00475 143 ivkvsAktGqGieeLkkelknLlesldakdkq..kplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvl 211
                +v +sA tG+G++++   l ++ ++   +++     l  ++ ++  + G G+ v   + +G  ++gD+ v 
  MMETSP1061-20121228|310_1 564 LVPTSAITGEGVQDILMLLCQISQRKIWQNIMwcANLEATVLEVKAIDGLGMTVDVLVVNGYLREGDKAVF 634
                6889*******************99888777522789999***************************9775 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.15
  TIGR00475 194 vtGtafsGevkvgDelvlepin..kkvrvkalqaqnqsvekavAGqRialnladvdkek 250
                v   + +G  kvg  l + +++  +  +v +++  +++ ++a  Gq +a+ + +  + +
  MMETSP1061-20121228|310_1 858 VGVEIVDGILKVGTPLCVPALGglHVGKVTSIEMNGKEQNTARKGQSVAIKIVNDSNPN 916
                455678999999999999988755678***********************998544444 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   3.2e-14   8.1e-12       7     140 ..     375     506 ..     371     526 .. 0.85
   2 ?    0.4   0.0      0.13        33     158     226 ..     565     636 ..     557     677 .. 0.80

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 3.2e-14
  TIGR01393   7 siiahidhGkstladrllektkavserelkeqlldsldlererGitikaqavrlkykak.dgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadve 140
                 i+ h+d Gk+ l d++ ++     e     q + +   e+    t++aq+ +l+ ++k d +   + +idtPGh  f+   sr  + c+ a+l+vd   G+e qt+  + +  +k++  +  +nkid   a   
  MMETSP1061-20121228|310_1 375 VIMGHVDTGKTKLLDKIRKTNVQEGEAGGITQQIGATYFEQK---TLQAQTEKLNATEKfDIKVPGMLVIDTPGHESFANLRSRGSSLCDVAILVVDLMHGLEQQTIESLNMLRKKNVPFVVALNKIDRCYAWKT 506
                5899************97776666666777888888889886...999999999988662567778999***********************************************************8777555 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.13
  TIGR01393 158 ilvsaktGigieelleaivkkvpaPkgdke....aplkalifdsvydayrGvvvyvrvveGkikkgdkiklls 226
                +  sa tG+g++++l  ++ ++++ k  ++    a+l+a +++       G+ v v vv+G +++gdk  + +
  MMETSP1061-20121228|310_1 565 VPTSAITGEGVQDILMLLC-QISQRKIWQNimwcANLEATVLEVKAIDGLGMTVDVLVVNGYLREGDKAVFCT 636
                56799*********98665.45555544443445899999**99999999****************9987755 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   8.1e-13   2.1e-10      15     144 ..     375     500 ..     368     506 .. 0.82

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 8.1e-13
  TIGR00503  15 aiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldr 144
                 i+ h d+Gkt l +k+        eaG +  +  +   +   ++ +         +  +fd +   + ++dtpGhe f++   r  +  d a++v+d  +G+e++t+  l++ r +++p +  lnk+dr
  MMETSP1061-20121228|310_1 375 VIMGHVDTGKTKLLDKIRKTNVQEGEAGGITQQIGATYFEQKTLQAQT----EKLNATEKFDIKVPGMLVIDTPGHESFANLRSRGSSLCDVAILVVDLMHGLEQQTIESLNMLRKKNVPFVVALNKIDR 500
                578999999999999998877666778877766666555544443332....2334445788877777789**********************************************************9 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   3.1e-12   7.9e-10       6     130 ..     376     502 ..     372     515 .. 0.82
   2 ?   -1.3   0.0      0.41     1e+02     517     568 ..     692     743 ..     674     752 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 3.1e-12
  TIGR01394   6 iiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykdtki...nivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpd 130
                i+ hvD Gkt l+Dk+ k   +  e+  +++  + +  +e+    +   k  a +  d+k+    ++DtPGh  f     r  s+ d ++l+vD + G   qt   l+   +++   +v +nkiDr  
  MMETSP1061-20121228|310_1 376 IMGHVDTGKTKLLDKIRKTNVQEGEAGGITQ-QIGATYFEQKTLQAQTEKLNATEKFDIKVpgmLVIDTPGHESFANLRSRGSSLCDVAILVVDLMHGLEQQTIESLNMLRKKNVPFVVALNKIDRCY 502
                789************9776665555555555.5677778887666667777777776766522269*****************************************9999999999********975 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.41
  TIGR01394 517 mivGehsreeDldvnvlkekkltnvrss.gkdeavkltpprkl.sLeealeyie 568
                m+vG ++ eeD++  v+   +l+n+ s  ++d +  l++  +l  Le  l++++
  MMETSP1061-20121228|310_1 692 MVVGPNDEEEDIKAEVMS--DLANLESQlSTDRVGVLVQASTLgALEALLQFLR 743
                9************99996..5777777524455555555555536888888865 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.2e-11     3e-09      14     155 ..     375     516 ..     362     523 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1.2e-11
  TIGR00484  14 GisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattve.wkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlksrl 155
                 i+ h+d+Gkt + ++i     +  + g + +      + eq+  +  t    at+ +  k   + +idtPGh  f+    r   + d a++v+d + G+e q++     ++k +vP +v +nk+d+  a  +     +++ l
  MMETSP1061-20121228|310_1 375 VIMGHVDTGKTKLLDKIRKTNVQEGEAGGITQQIG-ATYFEQKTLQAQTEKLNATEKFdIKVPGMLVIDTPGHESFANLRSRGSSLCDVAILVVDLMHGLEQQTIESLNMLRKKNVPFVVALNKIDRCYAWKTCKDAPIRDAL 516
                599*************9876666666666655443.357899999999998888876515667799*************************************************************9887666666666655 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   2.8e-11   7.1e-09      10     147 ..     376     500 ..     369     519 .. 0.77
   2 ?   -2.8   0.0       2.3   5.8e+02     269     296 ..     885     912 ..     883     923 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2.8e-11
  TIGR03680  10 lvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidl 147
                ++GhvD Gkt+l  ++      + +e    gi+ ++G + +e k+ +  +  e++  +ek +        +  + ++D+PGhe++      G++l d a+Lv++  + + + qt e l  l   ++  +v++ nkid 
  MMETSP1061-20121228|310_1 376 IMGHVDTGKTKLLDKIRK---TNVQEGEAGGITQQIGATYFEQKTLQAQT--EKLNATEKFD------IKVPGMLVIDTPGHESFANLRSRGSSLCDVAILVVDLMHGL-EQQTIESLNMLRKKNV-PFVVALNKIDR 500
                67**********998864...445567789*******7665544333322..3333333222......24556779***********999******************9.88****9999887766.5899*****95 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.3
  TIGR03680 269 evtsleagkkkveeakPgGlvavgtkLD 296
                +vts+e+++k+ ++a+ g  va+    D
  MMETSP1061-20121228|310_1 885 KVTSIEMNGKEQNTARKGQSVAIKIVND 912
                89****************9999876544 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   8.1e-10   2.1e-07      82     145 ..     438     500 ..     427     514 .. 0.85
   2 ?    1.6   0.0     0.098        25     240     287 ..     863     912 ..     858     950 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 8.1e-10
  TIGR02034  82 fivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidl 145
                ++v dtPGhe ++     g+s +d+a+l+vd  +G+ +qt     +     +  +v+a+nkid 
  MMETSP1061-20121228|310_1 438 MLVIDTPGHESFANLRSRGSSLCDVAILVVDLMHGLEQQTIESLNMLRKKNV-PFVVALNKIDR 500
                6899************************************887665555544.3689*****95 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.098
  TIGR02034 240 asGsvkvGdevvvlpsg..resrvarivtfdgelekaeaGeavtlvlede 287
                  G +kvG  + v   g  +  +v++i    +e ++a+ G++v++++ ++
  MMETSP1061-20121228|310_1 863 VDGILKVGTPLCVPALGglHVGKVTSIEMNGKEQNTARKGQSVAIKIVND 912
                567777777666544332267899****9*************99987554 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.4e-08   3.5e-06      18     140 ..     377     500 ..     368     519 .. 0.83
   2 ?    2.0   0.0     0.059        15     230     280 ..     860     910 ..     843     930 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.4e-08
  TIGR00485  18 ighvdhgkttltaaittvlakegkaaakkydeidkapeeka..rgitin.tahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdl 140
                +ghvd gkt l   i ++  +eg+a   + ++i ++  e++  +  t +  a+ +++ +      +d pgh  +      g++  d ailvv    g   qt e + + r+  vp  vv lnk+d 
  MMETSP1061-20121228|310_1 377 MGHVDTGKTKLLDKIRKTNVQEGEAGGIT-QQIGATYFEQKtlQAQTEKlNATEKFDIKVPGMLVIDTPGHESFANLRSRGSSLCDVAILVVDLMHGLEQQTIESLNMLRKKNVPF-VVALNKIDR 500
                7****************999999987665.67877765554112222221345568888889999*********99999************************************6.6789**996 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.059
  TIGR00485 230 grvergevkvgeeveivglketkkttvtgvemfkklldeakagdnvgvllr 280
                  +  g++kvg  + +  l   +   vt +em  k+ ++a+ g+ v + + 
  MMETSP1061-20121228|310_1 860 VEIVDGILKVGTPLCVPALGGLHVGKVTSIEMNGKEQNTARKGQSVAIKIV 910
                46778999****999999999999********************9988665 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   9.6e-09   2.5e-06      76     154 ..     427     501 ..     371     518 .. 0.75
   2 ?   -1.4   0.0      0.52   1.3e+02     232     263 ..     604     635 ..     598     680 .. 0.79
   3 ?    2.8   0.1     0.028       7.2     249     305 ..     862     920 ..     842     928 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 9.6e-09
  TIGR00483  76 ahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsv 154
                a +kf+ +   + ++d+pgh  f      g+s  d+a+lvv+  +g    + qt e + + r   +  ++va+nk+d+ 
  MMETSP1061-20121228|310_1 427 ATEKFDIKVPGMLVIDTPGHESFANLRSRGSSLCDVAILVVDLMHG---LEQQTIESLNMLRKKNVP-FVVALNKIDRC 501
                778999999999************999****************999...999*****9999999886.789******85 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.52
  TIGR00483 232 iqdvysitgvgtvpvgrvetgvlkkgekvvfe 263
                + +v  i g+g      v  g l++g+k vf 
  MMETSP1061-20121228|310_1 604 VLEVKAIDGLGMTVDVLVVNGYLREGDKAVFC 635
                66788999999554456778999999999996 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.028
  TIGR00483 249 vetgvlkkgekvvfepag.v.sgevksiemhheqieqaepgdnigfnvrgvskkdirrg 305
                +  g+lk+g+ +     g +  g+v siem  ++ + a  g+ + + + + s+ +i  g
  MMETSP1061-20121228|310_1 862 IVDGILKVGTPLCVPALGgLhVGKVTSIEMNGKEQNTARKGQSVAIKIVNDSNPNITYG 920
                446999999988765544243699**********************9999999888766 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.87   2.2e+02     174     197 ..     358     393 ..     319     417 .. 0.55
   2 !   19.3   0.0   4.1e-07    0.0001     257     299 ..     459     501 ..     429     522 .. 0.71
   3 ?    1.6   0.0     0.092        24     315     347 ..     555     587 ..     535     606 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.87
  TIGR03594 174 e.............pikiaiiGrpNvGKStLvNallg 197
                +             pi   i+G   +GK  L+ ++ +
  MMETSP1061-20121228|310_1 358 KanlaarspdnlrcPI-TVIMGHVDTGKTKLLDKIRK 393
                1122233333332222.23557777777766666644 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 4.1e-07
  TIGR03594 257 radvvllvlDategiseqDlkiaglileegkalvivvNKwDlv 299
                 +dv++lv+D  +g+++q  + ++++ +++ ++v+++NK+D +
  MMETSP1061-20121228|310_1 459 LCDVAILVVDLMHGLEQQTIESLNMLRKKNVPFVVALNKIDRC 501
                4677777777777777777777777777777777777777765 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.092
  TIGR03594 315 klkflkfapivfiSAltgkgveklleaikevye 347
                + +  +f+p+v +SA tg+gv+++l  + ++ +
  MMETSP1061-20121228|310_1 555 DWSNSDFVPLVPTSAITGEGVQDILMLLCQISQ 587
                5667899*****************988877765 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.2e-08   5.7e-06      24     151 ..     376     501 ..     359     510 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.2e-08
  TIGR00490  24 ivahidhgkttlsdnllagagmiseelag..eqlfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrl 151
                i+ h+d gkt l d++     +   e  g  +q+   + eq+    +  ++ ++    +++ +   + +idtpgh  f    +r     d ai+vv+ + g+  qt   l    k+nv  v+ +nk+dr 
  MMETSP1061-20121228|310_1 376 IMGHVDTGKTKLLDKIRKTN-VQEGEAGGitQQIGATYFEQK---TLQAQTEKLNATEKFDIKVPGMLVIDTPGHESFANLRSRGSSLCDVAILVVDLMHGLEQQTIESLNMLRKKNVPFVVALNKIDRC 501
                67899999999999876543.344444442244444444444...344455556666777777777789***********************************************************96 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   3.4       5.1   1.3e+03      99     163 ..     120     184 ..     109     209 .. 0.53
   2 ?   -1.8   0.4      0.88   2.3e+02     102     156 ..     319     369 ..     287     397 .. 0.62
   3 !   18.3   0.0   6.8e-07   0.00017      60     133 ..     440     506 ..     428     541 .. 0.79

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 5.1
  TIGR03918  99 eleeleeelleelkekkipvivvlnkidlkeeekekeklekkkeeevvlvsakekegieelkeal 163
                ++++ e + +++ +e +   i+ +++ +++ee++++e++e+kk++++ +++ +++eg    k++ 
  MMETSP1061-20121228|310_1 120 RKQQEEAARIAAEEEAERQRIAEIERKEAEEERRKQEEKERKKQKQKEKIERQKREGTYMTKKQK 184
                45555555555556666666666666666666555444444444444444444444433333322 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.88
  TIGR03918 102 eleeelleelkekkipvivvlnkidlkeeekekeklekkkeeevvlvsakekegi 156
                +lee+ l+elk++     ++++k+dl +e+k++e ++k++eee+  + a++ +++
  MMETSP1061-20121228|310_1 319 RLEEQRLAELKKQ----AALAEKADLLKEHKRMEGKKKREEEEKANLAARSPDNL 369
                3444444444443....35667777777776666666666666666555555544 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 6.8e-07
  TIGR03918  60 liDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke 133
                +iDT+G +   ++ +lR + +    + +d+a+lvvd  ++le++  e l+ l++k++p++v+lnkid + + k+
  MMETSP1061-20121228|310_1 440 VIDTPGHE---SFANLRSRGS----SLCDVAILVVDLMHGLEQQTIESLNMLRKKNVPFVVALNKIDRCYAWKT 506
                56666654...3444454433....469***************************************9876554 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.1e-06    0.0016     104     161 ..     463     519 ..     450     541 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.1e-06
  TIGR03598 104 vvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkke 161
                 +l+vD+ h+l+++  e l++l+++++p++v l+K+D++   ++ k  + ++++lk++
  MMETSP1061-20121228|310_1 463 AILVVDLMHGLEQQTIESLNMLRKKNVPFVVALNKIDRCYAWKTCKD-APIRDALKEQ 519
                47889*********************************987665554.3455555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (967 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       549  (0.133837); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        21  (0.00511945); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.88u 0.20s 00:00:01.08 Elapsed: 00:00:00.78
# Mc/sec: 1636.33
//
Query:       MMETSP1061-20121228|312_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1615.73
//
Query:       MMETSP1061-20121228|313_1  [L=973]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   13.0   0.1      0.062   11.4   0.0    1.8  1  TIGR03092 SASP_sspI: small, acid-soluble spore protein I


Domain annotation for each model (and alignments):
>> TIGR03092  SASP_sspI: small, acid-soluble spore protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.5e-05     0.062       6      43 ..     561     598 ..     560     605 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.5e-05
  TIGR03092   6 vleNvknnskeeleatIvdaiqsgeEkmlPGLGVlFEv 43 
                +++Nv  n++e + + I   +++  E+++P  G++FE 
  MMETSP1061-20121228|313_1 561 IVDNVVLNENEYVMKCIMTTLDKAGENVIPVTGIVFEK 598
                789*********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.46
# Mc/sec: 2791.86
//
Query:       MMETSP1061-20121228|317_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0097   14.4   1.2      0.012   14.2   0.0    1.8  2  TIGR01167 LPXTG_anchor: LPXTG-motif cell wall anchor domain


Domain annotation for each model (and alignments):
>> TIGR01167  LPXTG_anchor: LPXTG-motif cell wall anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1         1   4.1e+03      10      18 ..       6      14 ..       5      23 .. 0.62
   2 !   14.2   0.0   2.8e-06     0.012      10      34 .]     267     294 ..     264     294 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1
  TIGR01167 10 nslllllGl 18
               n l+lllG 
  MMETSP1061-20121228|317_1  6 NLLFLLLGC 14
               556777775 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 2.8e-06
  TIGR01167  10 nslllllGl...lllglaglllrkrkkk 34 
                +sl++++ +   lll+la+++ r++k+k
  MMETSP1061-20121228|317_1 267 DSLIVFMAVplfLLLLLALFMTRRKKRK 294
                4555555556589999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.24
# Mc/sec: 2375.80
//
Query:       MMETSP1061-20121228|315_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-23   81.9   0.0    1.3e-23   81.5   0.0    1.1  1  TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit


Domain annotation for each model (and alignments):
>> TIGR04171  RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.5   0.0   3.3e-27   1.3e-23      13     313 ..     109     401 ..     104     404 .. 0.85

  Alignments for each domain:
  == domain 1    score: 81.5 bits;  conditional E-value: 3.3e-27
  TIGR04171  13 ldkevwekllkqfWldeeiplsnDlksWkelseeekelvkkvltgLtlLDtlqsevGmpaliesveteqekavlnniafmeavHAksYssifstlls.teeidelfeWveenealqkkaelilevYeeledpellkakvasvllesfLfYsgFylPlylagqgkltnsaeiiklilrDesiHgvyvglkaqelleklseeeqeelkkevlelleelyeneekyteelYdevgltedvkkfvrYnankalmnlGfealfeeeaeevnpv.vlnglstetknhDfFskkgngYklgkveeleddd 313
                   e+++k  + fW+ eei l  D+++W +ls++e++ ++++l+  +  D + +e+ ++ +++++++++ +  + +  ++e++H   Ys +  t+++ ++e  +l + +++ + +qkka+  l+  ++ +  +  ++ va  ++e++ f + F + ++l  +g +   a   +li rDe +H  +  +++++l++kls e+  e+ + ++++ +e+++     +e +  + gl+   ++++++ a++ l  lG  + +++     np   +  +s + k  +fF k+   Y +  v   +dd+
  MMETSP1061-20121228|315_1 109 DLWEMYKKAEASFWTAEEIDLGADMADWVKLSDNERHFISHILAFFAASDGIVNENLAQNFMTELQSPEGRCFYGFQIAVENIHSETYSLLIDTYIKdNNEKMHLLHAIDTVPCVQKKAQWALQWCDS-NMASFAERCVAFCVVEGIFFSGSFCAIFWLKKRGLMPGLAFSNELISRDEGLHCDFACMLYNKLVNKLSPERIVEIVTDAVDIEKEFVSDAL-PVELIGMNSGLM---QQYIEFCADRLLVALGASKHYNTP----NPFeWMEMISLQGK-TNFFEKRVGEYAKSGVGGSSDDN 401
                4567899***************************************************************************************9862556678889999**************9999.77778999999999999877777777778888999999999999**************************9988888888888777776544.456666666665...5799999**************999....77524556666655.46999888889887777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1691.11
//
Query:       MMETSP1061-20121228|318_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.93    7.1   7.2        1.1    6.9   5.0    1.1  1  TIGR03656 IsdC: heme uptake protein IsdC


Domain annotation for each model (and alignments):
>> TIGR03656  IsdC: heme uptake protein IsdC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.0   0.00026       1.1      89     129 ..      17      60 ..       4      71 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00026
  TIGR03656  89 g..vkvvskdeaaDkRtvefevs.dLskpveakikvvvddkvnY 129
                +  ++v + ++a+D+R ve +v+ d+++ ve+ ++v+v+ +v+ 
  MMETSP1061-20121228|318_1  17 QevTEVEDAEDAEDQRRVEEDVEeDVEEDVEVDVEVDVEVDVEV 60 
                2435677788999******9996368888888887777766653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       373  (0.0909313); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.21s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 267.64
//
Query:       MMETSP1061-20121228|314_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.68
# Mc/sec: 1267.48
//
Query:       MMETSP1061-20121228|323_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|321_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 979.27
//
Query:       MMETSP1061-20121228|325_1  [L=2436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       420  (0.102389); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.11u 0.49s 00:00:02.59 Elapsed: 00:00:01.84
# Mc/sec: 1747.42
//
Query:       MMETSP1061-20121228|324_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-65  217.7   1.8    3.6e-65  217.2   1.3    1.2  1  TIGR01008 rpsC_E_A: ribosomal protein S3
    1.7e-10   38.8   0.2    1.7e-10   38.8   0.2    1.5  2  TIGR01009 rpsC_bact: ribosomal protein S3


Domain annotation for each model (and alignments):
>> TIGR01008  rpsC_E_A: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.2   1.3   1.8e-68   3.6e-65       2     187 ..      12     208 ..      11     216 .. 0.92

  Alignments for each domain:
  == domain 1    score: 217.2 bits;  conditional E-value: 1.8e-68
  TIGR01008   2 erkfvkeglkrlkideflkkeleeaGysgvdvrktplgtkviifaerpglviGrrGrrireltellkkkfgl..enpqieveevenpeldakvqaekiaralerGlhfrrvayaavrrimeaGakGvevtisGkltseraktekfadGylvksGepaeelvdkgtaiallkkGvlGvkvkimrpdvk.........l 187
                +rkfv++g+++++++e l  el+e+Gy+gv++r+tp  t++ii+a+r++ v+G++Grrirelt +++k+fg   + +++++e+v+n+ l a++qae+++++l  Gl++rr+ y++vr +mea akG+ev++ Gkl+++rak +kf dGy++k+G+  + + d++++++++++Gv+G++v im p            l
  MMETSP1061-20121228|324_1  12 KRKFVADGVFYAELNELLIAELAEDGYAGVELRVTPHRTEIIIRATRTQNVLGENGRRIRELTSIVQKRFGFadGAVELYAERVQNRGLCAQAQAESLKFKLLGGLAVRRACYGVVRFVMEASAKGCEVIVTGKLRGQRAKGMKFGDGYMIKTGHAGQVYTDTAVRHVMMRQGVIGIRVSIMLPHDPkgqlgpkipL 208
                89******************************************************************888722567889******************************************************************************************************886543454444444 PP

>> TIGR01009  rpsC_bact: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.2   8.4e-14   1.7e-10      40     204 ..      26     193 ..      16     199 .. 0.87
   2 ?   -3.5   0.5      0.75   1.5e+03     109     123 ..     243     257 ..     231     263 .. 0.74

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 8.4e-14
  TIGR01009  40 rellkkelkkasiseveiereadkvevtihtarPglvigkkgkeieklkkelkklvgs..kevkinikevkkpeldaklvaeeiakqlekRvsfRkamkkaiqkalkagakGvkvkvsGRlaGaeiaRselykeGrvPLhtlRad...iDYalaeakttyGvigvkvWif 204
                 ell  el++ + + ve++ + ++ e++i ++r + v+g++g+ i +l++ ++k  g     v++  ++v++  l a+  ae++ ++l    + R+a    ++ +++a akG  v v+G+l G+  a+   + +G + ++t  a     D a+++++   Gvig++v i 
  MMETSP1061-20121228|324_1  26 NELLIAELAEDGYAGVELRVTPHRTEIIIRATRTQNVLGENGRRIRELTSIVQKRFGFadGAVELYAERVQNRGLCAQAQAESLKFKLLGGLAVRRACYGVVRFVMEASAKGCEVIVTGKLRGQR-AKGMKFGDGYM-IKTGHAGqvyTDTAVRHVMMRQGVIGIRVSIM 193
                567778888999999****************************************99866789999*********************************************************85.66666777776.45555541115778888889999999999775 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.75
  TIGR01009 109 kpeldaklvaeeiak 123
                +++++a+lva++ a+
  MMETSP1061-20121228|324_1 243 QAQAQAELVAQQQAQ 257
                566777888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 1113.66
//
Query:       MMETSP1061-20121228|326_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.18s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 628.27
//
Query:       MMETSP1061-20121228|322_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-44  150.3   0.0    1.5e-23   81.2   0.0    2.1  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    2.5e-44  149.7   0.0    4.5e-24   82.9   0.0    2.2  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    7.1e-40  134.9   0.0    3.8e-25   86.3   0.0    2.1  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    1.1e-36  124.2   0.2    1.5e-26   90.8   0.0    2.7  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    1.4e-22   77.7   0.3    1.2e-14   51.5   0.0    2.3  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    9.3e-21   71.9   0.0      2e-12   44.4   0.0    2.6  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    9.2e-20   68.3   0.4    1.8e-18   64.1   0.3    2.6  1  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    7.1e-18   62.0   1.5    3.2e-08   30.1   0.8    3.1  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.7e-17   60.7   0.0    3.4e-11   39.9   0.0    2.1  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    3.5e-11   40.2   0.0    3.1e-07   27.2   0.0    2.5  2  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase
    1.8e-08   30.1   0.8    4.7e-06   22.0   0.2    2.6  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    3.7e-05   20.3   0.0     0.0044   13.5   0.0    2.9  3  TIGR02316 propion_prpE: propionate--CoA ligase
  ------ inclusion threshold ------
      0.021   10.8   0.1      0.029   10.3   0.0    1.1  1  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase


Domain annotation for each model (and alignments):
>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   4.6e-26   1.5e-23      27     264 ..      35     271 ..      26     275 .. 0.88
   2 !   67.4   0.0   7.1e-22   2.2e-19     242     444 ..     275     467 ..     272     541 .. 0.82

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 4.6e-26
  TIGR02262  27 dvsslsygeleaevrrvaaalrrlGvkreervllvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvseellpvlkevlaklpdleklvvvgakp...agekqlaellateseqekaaatkaddpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlglreddvvfsaaklffayGlGn..alifplsvGatavlmaerptpdavfdrlrrvkptifygvptlya 264
                ++++++y+e+ +e+++va  + +lG   + +++++ ++ v + i+ +G + aG v v++   lta+  +y+le+s a++v++ +      +++ a +p+  + v     p      k+  ++++t s+  ++ a + d++a  +y+sGstG+pkGv+     ++ t++    kv+++  dd  +s   l  a+G+    ++++pl  G   v +ae  t+      l+r +pt+f +vp l++
  MMETSP1061-20121228|322_1  35 NIKTFTYQEVMDEAKKVAGYIESLGYPAKSQIAICSKNCVYWVIADIGIMLAGHVSVPVYPTLTAETTNYILEHSEAKMVFIGKLDEKPWAAMKAGIPSTIDAVSFPLCPkdiLQSKKWDDVISTSSPIASPVARTRDEMATIIYTSGSTGKPKGVMTSFGAMTDTTKG-ITKVMKITHDDRYISY--LPVAHGMERwlGMVVPLQTGM-QVWYAEALTT--FVADLNRCEPTLFLSVPRLWT 271
                57899*****************************************************************************98766667778888888777776554442236788999**************************************99999999888.6899********9996..6677777653389*****997.6789998775..56789************9986 PP

  == domain 2    score: 67.4 bits;  conditional E-value: 7.1e-22
  TIGR02262 242 davfdrlrrvkptifygvptlyaamladpelkaedekrlrlctsaGealpeevGkrwkarfGvdildGvGstellhiflsnlpddvkyGtsGkpvpGyrlrlvddggedvadgevGellvsgpssaagywnnreksratfe.GewtrsGdkyvrnddGsytyaGrtddllkvs.Giyvspfevesaliaheavleaavvgaeded 444
                + vf ++ ++k +++ ++p l   ++ ++ lka    ++r + s   +lpee+   w +++G+++l+G G te      +  p++ + G  G+p +    r+ dd          Ge++v++p   +gy++n+e +++t +  ++ r+Gdk  +++dG+   +Grt +++k s G yv+p  +e+ li+ + v  a v g+  ++
  MMETSP1061-20121228|322_1 275 AGVFSKMPEKKVNMLLSIPLL-NILIKKKLLKALGLAKVRYAGSGSAPLPEEL-LAWYRKLGLELLEGYGMTENFNYSHASNPGRSRVGYVGHPYDDVVCRIADD----------GEIQVKTPGKMMGYFKNPEATAETITeDGYVRTGDKGQVDEDGRLRITGRTKEIFKTSkGKYVAPAPIENLLISNQYVELACVGGKSQPQ 467
                6799999999********976.456777788888899***************9.67999***************99999999************98887777665..........89*********************9862679**************************9879**************9988777666665554 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0     5e-21   1.6e-18       1     165 [.      40     224 ..      40     233 .. 0.83
   2 !   82.9   0.0   1.4e-26   4.5e-24     189     383 ..     274     464 ..     266     494 .. 0.84

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 5e-21
  TIGR01923   1 tfaeldkeaarlAkalkaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslleeke.dlqaisldeleaeae................aeevs....lsa..sfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWLlsLPlyH 165
                t++e+  ea+++A +++  +   ++ +a+ ++n +  v++ + ++l+g + +++ + Lt++  + +l++++ ++++  +l e+   +++a   + + a +                     s    + +    + d++at+i+TSgstGkpK+v  +f+      +g+++ +++t++d++++ LP+ H
  MMETSP1061-20121228|322_1  40 TYQEVMDEAKKVAGYIESLGYPAKSQIAICSKNCVYWVIADIGIMLAGHVSVPVYPTLTAETTNYILEHSEAKMVFIGKLDEKPWaAMKAGIPSTIDAVSFplcpkdilqskkwddvI---StsspIASpvARTRDEMATIIYTSGSTGKPKGVMTSFGAMTDTTKGITKVMKITHDDRYISYLPVAH 224
                79**************************************************************************988777544234443333333333355666666655555540...14455433114568**************************************************988 PP

  == domain 2    score: 82.9 bits;  conditional E-value: 1.4e-26
  TIGR01923 189 aaeqllesianekvthiSlVptqLkrlleesssepeslrkiLL...GGsaipaplieeaqekglpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvddkeghgeilvkganlmkgYlek.gelteaveeqGwlktgDlgeldgegfllvldRrddli.ISGGENiypeeiEkvlkslpevqeavvvpke 383
                +   ++ ++ ++kv+++  +p +L+ l++++  +   l k+     G + +p +l+   ++ gl++ ++yGmTE +  + ++++  ++   + vG+p   v  +i  d     gei vk +  m+gY+++ +   e++ e+G+++tgD g++d++g+l +++R ++++  S G  + p+ iE++l s   v+ a+v +k 
  MMETSP1061-20121228|322_1 274 Q-AGVFSKMPEKKVNMLLSIP-LLNILIKKKLLKALGLAKVRYagsGSAPLPEELLAWYRKLGLELLEGYGMTENFNYSHASNPGRSR--VGYVGHPYDDVVCRIADD-----GEIQVKTPGKMMGYFKNpEATAETITEDGYVRTGDKGQVDEDGRLRITGRTKEIFkTSKGKYVAPAPIENLLISNQYVELACVGGKS 464
                5.4566677778999998888.68888888877656555555411166789****************************999987665..799************777.....****************967778999999***************************6699*******************999998775 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   1.2e-27   3.8e-25       1     230 [.      40     277 ..      40     290 .. 0.80
   2 !   47.5   0.0   7.7e-16   2.4e-13     210     409 .]     283     460 ..     274     460 .. 0.83

  Alignments for each domain:
  == domain 1    score: 86.3 bits;  conditional E-value: 1.2e-27
  TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeelaeelaeval...............eailleeleekaaedasaeeaaeakskpddlayviyTSGStGkPKgVlvehrslvnllaslarryelseedrvlqfsslaFDlsve.eiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeea 230
                tY+e  ++a+++A ++++  g  +++ +a++ + +v  v+a ++++ aG++ vp+ p+  ae +++ile ++ak+++  +  ++  a+++                ++il ++++++  +++s+ +++ a  + d++a++iyTSGStGkPKgV+ +  +++++++  ++  +++++dr+++  ++a+ +  +  ++++l +G++++ +++  +     ++a+l++ +  t++ ++p l++ +++  
  MMETSP1061-20121228|322_1  40 TYQEVMDEAKKVAGYIESL-GYPAKSQIAICSKNCVYWVIADIGIMLAGHVSVPVYPTLTAETTNYILEHSEAKMVFIGKLDEKPWAAMKAgipstidavsfplcpKDILQSKKWDDVISTSSPIASPVA-RTRDEMATIIYTSGSTGKPKGVMTSFGAMTDTTKGITKVMKITHDDRYISYLPVAHGMERWlGMVVPLQTGMQVWYAEA-LT----TFVADLNRCE-PTLFLSVPRLWTKFQAGV 277
                9****************85.6*******************************************************997655555554444777788888776665555555555555555444444444.57999*********************************998999**************876368899999977776554.33....3677887777.788888888888777665 PP

  == domain 2    score: 47.5 bits;  conditional E-value: 7.7e-16
  TIGR01733 210 erkvtvlsltpsllellaeea.see.lkslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldealrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKi.rGfRielgEieaalaelpgveeavv 409
                e+kv++l ++p l  l++++  ++  l+++r++  +G a  +e++  + ++ + ++l+ +YG TE+  ++++ +  ++         +G+p++ v + + d+          GE+ ++ +g + GY+++pe tae+ +ed +         rTGD +++++dG+l + GR+ +  K  +G  + ++ ie+ l + + ve a+v
  MMETSP1061-20121228|322_1 283 EKKVNMLLSIPLLNILIKKKLlKALgLAKVRYAG-SGSAPLPEELLAWYRKLG-LELLEGYGMTENFNYSHASNPGRSR-----VGYVGHPYDDVVCRIADD----------GEIQVKTPGKMMGYFKNPEATAETITEDGYV--------RTGDKGQVDEDGRLRITGRTKEIFKTsKGKYVAPAPIENLLISNQYVELACV 460
                4569999999999888888885434455666666.456777777888888887.89**********9999755433332.....4569***********999..........*************************999875........7************************746************999999998876 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.0   4.7e-29   1.5e-26      24     266 ..      37     274 ..      32     290 .. 0.83
   2 !   30.7   0.0   7.7e-11   2.4e-08     351     487 ..     372     497 ..     273     507 .. 0.73

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 4.7e-29
  TIGR03098  24 rtltyaaLseevkalasglkalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledalakchdlrtlilvdepekasekkagaevlsweklkaleeaa.akvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredDrllavLPlsfDyGlnq...lttaflvGatvvlldyllpkDvlkavekekitglaavPPlWlqLa 266
                +t+ty+++ +e+k++a  +++lg     ++ai  +  +  v+a ++  lag v vp+ P L ae  +yil+ +++k++   k   +    ++a +++    + +    k+      +++ +w++++++++ + ++v  + d++a+i+YtsGstG+Pkgv+ s   + +  k +++ +++++dDr ++ LP++   G++    +   +++G +v   + l++   +  +++ + t + +vP lW +  
  MMETSP1061-20121228|322_1  37 KTFTYQEVMDEAKKVAGYIESLGYPAKSQIAICSKNCVYWVIADIGIMLAGHVSVPVYPTLTAETTNYILEHSEAKMVFIGKLDEKPWAAMKAGIPSTIDAVSFPLCPKD-----ILQSKKWDDVISTSSPIaSPVARTRDEMATIIYTSGSTGKPKGVMTSFGAMTDTTKGITKVMKITHDDRYISYLPVAH--GMERwlgMVVPLQTGMQVWYAEALTT--FVADLNRCEPTLFLSVPRLWTKFQ 274
                799*************************************************************************9998887777777777777755555544444433.....45568*******999987899999***************************************************986..55441113445566777766666654..677888888888888888888765 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 7.7e-11
  TIGR03098 351 capeeeGelvhrGalvakGYWndpektaerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemikts.GyRvsPteveevllatglvaeavvlgvpdpelGqaivlvvvesdkeeldkkellkelraelP 487
                c   + Ge+  + +   +GY+++pe+tae   +           +  v  GD+++ De+G l + gR  e+ kts G  v+P  +e+ l++ + v+ a v g  +p    ai  +  ++++++++ ++ ++ + ++l 
  MMETSP1061-20121228|322_1 372 CRIADDGEIQVKTPGKMMGYFKNPEATAETITE-----------DGYVRTGDKGQVDEDGRLRITGRTKEIFKTSkGKYVAPAPIENLLISNQYVELACVGGKSQP-QPFAILQLSEDPKGKAIASESEREMMGKALE 497
                666666777767677778888888888886654...........445899************************98999****************98887775544.4556666666666666666655555555555 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   3.9e-17   1.2e-14      24     188 ..      37     218 ..      30     226 .. 0.79
   2 !   24.0   0.0   8.5e-09   2.7e-06     341     426 ..     375     458 ..     368     499 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 3.9e-17
  TIGR01734  24 qeltykeLkeesdklaaalqerlleekePiivfGkqefemlvaflgsiksGhayiPvDtsipleriekikeaaepelvi..evaelsielvete.vitleal......eeieeeka..eavelekavk......eddnyyiiytsGstGkPkGvqishdnLvsftnWiledfklseekqlln 188
                + +ty+e+++e++k+a  ++    ++k+ i +  k+  + ++a +g + +Gh  +Pv    + e ++ i e +e+++v+  +  e +  +++     t++a+      ++i+++k+  +++++++ ++       d+   iiytsGstGkPkGv  s   +   t+ i++  k +++ ++++
  MMETSP1061-20121228|322_1  37 KTFTYQEVMDEAKKVAGYIESLGYPAKSQIAICSKNCVYWVIADIGIMLAGHVSVPVYPTLTAETTNYILEHSEAKMVFigKLDEKPWAAMKAGiPSTIDAVsfplcpKDILQSKKwdDVISTSSPIAspvartRDEMATIIYTSGSTGKPKGVMTSFGAMTDTTKGITKVMKITHDDRYIS 218
                689**************************************************************************984445677777666653233333322222367777766556666666554222222588899****************99999988888888777777666665 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 8.5e-09
  TIGR01734 341 gekGeivivGdsvskGylnnpekteeaffeaegkrayrtGDagtieddgllfyqGrlDfqikl.nGyrieLedieanlkkskyikea 426
                +++Gei ++ +    Gy++npe t+e+  e+  +   rtGD+g++++dg l++ Gr+    k  +G  +    ie+ l   +y++ a
  MMETSP1061-20121228|322_1 375 ADDGEIQVKTPGKMMGYFKNPEATAETITEDG-Y--VRTGDKGQVDEDGRLRITGRTKEIFKTsKGKYVAPAPIENLLISNQYVELA 458
                689***********************986543.3..49******************9755554245555556666666666666555 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   6.4e-15     2e-12      47     260 ..      32     237 ..       4     255 .. 0.82
   2 !   24.6   0.0   6.6e-09   2.1e-06     367     462 ..     364     452 ..     309     465 .. 0.69

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 6.4e-15
  TIGR03208  47 esgavrrlsyreldalvdriavglarlgvgrgdvvslqlpnrwefvalylacarigavlnplmpifrerelsfmlkfadskvlvvpksfrgfdhaamarelqsklpalrqvvvvdgdgdddfdallvtaerdddpdaaa.ilrgdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgegdvilmaspmahqtgfmyglmlplv 260
                ++++++ ++y+e+   ++++a  ++ lg      +++   n    v+  +     g v  p+ p +  +   ++l+++++k++ + k   +   aam +++ s + a+   +          + +l + ++dd   +++ i    + + d+++ +iytsg+tg+pkgvm +  ++    +   + +++ + d  +   p+ah      g+++pl 
  MMETSP1061-20121228|322_1  32 GDANIKTFTYQEVMDEAKKVAGYIESLGYPAKSQIAICSKNCVYWVIADIGIMLAGHVSVPVYPTLTAETTNYILEHSEAKMVFIGKL-DEKPWAAMKAGIPSTIDAVSFPLC--------PKDILQSKKWDDVISTSSpIASPVARTRDEMATIIYTSGSTGKPKGVMTSFGAMTDTTKGITKVMKITHDDRYISYLPVAHGMERWLGMVVPLQ 237
                4567899**************************9**999999999999999999***************************9999875.455788998888887777654332........2235556666665554441444456788*********************9999999999999*******************9888888888875 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 6.6e-09
  TIGR03208 367 glplpgvevkvidadgaklsagevgrllvraasnfggylkrphlna..vdaegwfdtgdlafldaegyiriagrskdvii.rggenipvveieallykh 462
                g p   v  ++ d           g++ v++  ++ gy+k p+  a  +  +g+  tgd  ++d +g +ri+gr+k++     g+ +    ie+ll   
  MMETSP1061-20121228|322_1 364 GHPYDDVVCRIAD----------DGEIQVKTPGKMMGYFKNPEATAetITEDGYVRTGDKGQVDEDGRLRITGRTKEIFKtSKGKYVAPAPIENLLISN 452
                5555555555544..........4777889999999******9764227789*************************9851468888888999998765 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.3   5.6e-21   1.8e-18     173     466 ..     153     452 ..     132     465 .. 0.73

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 5.6e-21
  TIGR03205 173 yadfvkgaakpaewp.avkaddvallqytggttglpkgamlthgnltsav.siydvwgk..rsraer.....gdvervi.cvlpl......fhiyaltvillrslkrgd...lisl...hqrfdvaavlrdieekratvfpgvptmwialandpslekrdlsslatigsggaplpvevaklferkvglklksgwgmtetcspgtghplegpdkpgsiglmlpgieldvvslddpkkvlppgevgelrirgpnvtrgywnraeesaeafvgdrfl.tgdigyvdrdgyfflvdrkkdmi.isggfnvypqmieqaiyel 466
                + d +  +++p++ p a + d++a + yt g+tg pkg m + g +t +   i  v      +r  +      ++er +  v+pl      ++  alt  +   l+r +   ++s+     +f+ a v+  + ek+  ++  +p + i +  +  l+   l+ +  +gsg aplp e+     rk gl+l  g+gmte      +    g  + g +g        dvv            + ge++++ p    gy++++e +ae++ +d ++ tgd g vd+dg + +  r k++   s g  v p  ie+ + + 
  MMETSP1061-20121228|322_1 153 WDDVIS-TSSPIASPvARTRDEMATIIYTSGSTGKPKGVMTSFGAMTDTTkGITKVMKIthDDRYISylpvaHGMERWLgMVVPLqtgmqvWYAEALTTFV-ADLNRCEptlFLSVprlWTKFQ-AGVFSKMPEKKVNMLLSIPLLNILIK-KKLLKALGLAKVRYAGSGSAPLPEELLAW-YRKLGLELLEGYGMTENFNYSHASN-PGRSRVGYVGHPYD----DVV--------CRIADDGEIQVKTPGKMMGYFKNPEATAETITEDGYVrTGDKGQVDEDGRLRITGRTKEIFkTSKGKYVAPAPIENLLISN 452
                445554.455666662667899***********************99765257666654113443322222156888763577873332113344676544.4455544332566511144554.78*******************99775.568999*******************9876.59**************987644332.36666676665332....333........23356799************************9987659*******************98735789999999999876655 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.8     1e-10   3.2e-08      86     285 ..      35     217 ..      28     223 .. 0.83
   2 !   26.3   0.0   1.4e-09   4.4e-07     451     536 ..     380     463 ..     365     499 .. 0.89

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1e-10
  TIGR02188  86 dsrkltYaellrevcrlanvlkelGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaeesvekvlvvkrtgeevaewkegrDvwweelvekeasaecepekldsedplfiLYtsGstGkPkGvlhttgGylllaaltvkyvfdikdedifw 285
                + +++tY+e+++e  ++a  +++lG     ++ai     +  via ++++  G v   v+   +ae+ +  ++ +eak+v     +l ++   ++k+ + +++++++        +    +++      + ++w++++++ +s   +p +   +++  i+YtsGstGkPkGv+ +  G ++ ++  +  v  i ++d+++
  MMETSP1061-20121228|322_1  35 NIKTFTYQEVMDEAKKVAGYIESLGYPAKSQIAICSKNCVYWVIADIGIMLAGHVSVPVYPTLTAETTNYILEHSEAKMVFIG--KLDEKPWAAMKAGIPSTIDAVS--------FPLCPKDIL-----QSKKWDDVIST-SSPIASPVARTRDEMATIIYTSGSTGKPKGVMTS-FGAMTDTTKGITKVMKITHDDRYI 217
                57899******************************99999999999999999*99999**********99999*****99874..4555666777877777766543........444455544.....34579999996.78888888888899999**************965.567888899999999999999996 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1.4e-09
  TIGR02188 451 ikkpwPsmlrtiygdeerfvetYfkklkglyftGDgarrdkdGyiwilGRvDdvinvs.Ghrlgtaeiesalvsheavaeaavvgvp 536
                i+   P+ +++ ++++e   et ++  +g+  tGD+ + d+dG + i+GR+ ++ + s G  ++ a ie+ l+s++ v e a+vg +
  MMETSP1061-20121228|322_1 380 IQVKTPGKMMGYFKNPEATAETITE--DGYVRTGDKGQVDEDGRLRITGRTKEIFKTSkGKYVAPAPIENLLISNQYV-ELACVGGK 463
                556689***********99999988..8999*************************9879999***********9998.55666544 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     3e-07   9.4e-05      47     235 ..      37     225 ..       7     254 .. 0.88
   2 !   39.9   0.0   1.1e-13   3.4e-11     265     458 ..     278     458 ..     271     463 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3e-07
  TIGR02275  47 rkfsyrelderadnlaasltklGikkgdtavvqlpniaefyivffallklGvaPvlalfshrkselkayaeqieaalliidrahslfdedalarelkaklstlkvvivagkeveeelksaleslaeevkle.etkadevaffqlsGGstGtpkliPrthddyaysvrrsveiceltqqtrylcalPaahn 235
                + f+y+e+ ++a+++a  +++lG     ++ +   n   + i+   ++ +G + v   ++      ++  e++ea+++ i +  +     a+   + +++ ++   +   +  ++++ + + s+ + +    + + de+a +  + GstG pk +  +    + + +   ++ ++t++ ry++ lP+ah 
  MMETSP1061-20121228|322_1  37 KTFTYQEVMDEAKKVAGYIESLGYPAKSQIAICSKNCVYWVIADIGIMLAGHVSVPVYPTLTAETTNYILEHSEAKMVFIGKLDEK-PWAAMKAGIPSTIDAVSFPLCPKDILQSKKWDDVISTSSPIASPvARTRDEMATIIYTSGSTGKPKGVMTSFGAMTDTTKGITKVMKITHDDRYISYLPVAHG 225
                689**********************************9999999***********999999999999999*****99887654433.34566677777777777777777777778888888888886666366789****************************************************6 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 1.1e-13
  TIGR02275 265 fpliekhkvtvtalvPpavalwldaaeksradlsslkllqvGGaklsealarrvpkvlgcklqqvfGmaeGlvnytrlddsdeiivttqGkPispddevrvvdeegepvaeGeaGrlltrGPytirGyykaeehnakafdaeGfyitGdlvkltkeGyivveGrakdqinr.GGekiaaeeienlllkhpavida 458
                f+ + ++kv++   +P +  + +++   +   l+ ++    G a l e+l +   + lg +l   +Gm+e + ny+   ++    v   G+P   +d+v          +  + G + ++ P  + Gy+k++e  a++ +++G+ +tGd+ +++++G ++++Gr+k+      G+ +a   ienll+  + v  a
  MMETSP1061-20121228|322_1 278 FSKMPEKKVNMLLSIPLLN-ILIKKKLLKALGLAKVRYAGSGSAPLPEELLAWY-RKLGLELLEGYGMTENF-NYSHASNPGRSRVGYVGHP---YDDVVC--------RIADDGEIQVKTPGKMMGYFKNPEATAETITEDGYVRTGDKGQVDEDGRLRITGRTKEIFKTsKGKYVAPAPIENLLISNQYVELA 458
                5555666777765555444.4445555555667777777777777777776654.45777777777777764.7777777777766666665...344332........223446778899999******************************************98875258889*********998888665 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   9.9e-10   3.1e-07      97     200 ..     174     275 ..     162     311 .. 0.84
   2 !   10.3   0.0   0.00013     0.042     266     329 ..     400     461 ..     387     504 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 9.9e-10
  TIGR02372  97 arltfatsGstgtPkPvthswaaLlreaealakalgerpapvravialvPahhlyGflfsvllPeaaGaevkelaaapaaal.lrearpgdLivatPalWeqlad 200
                   +  tsGstg Pk v  s+ a++  ++ + k++   +++  + i+++P+ h      ++++P ++G++v   +a+++  + l + +   L +++P lW ++ +
  MMETSP1061-20121228|322_1 174 MATIIYTSGSTGKPKGVMTSFGAMTDTTKGITKVMK-ITHDD-RYISYLPVAHGMERWLGMVVPLQTGMQVWYAEALTTFVAdLNRCE-PTLFLSVPRLWTKFQA 275
                344567****************************99.55555.69***************************9999985443144444.4699********9976 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00013
  TIGR02372 266 dalssdgaarrldlqdrlrWddervfvieGrldeilqvg.GvnvspghvkdvLeaepavealavr 329
                ++ + dg  r     d+ + d++++++i+Gr  ei++ + G  v p+ ++++L +++ ve + v 
  MMETSP1061-20121228|322_1 400 ETITEDGYVR---TGDKGQVDEDGRLRITGRTKEIFKTSkGKYVAPAPIENLLISNQYVELACVG 461
                5555566555...7899999****************986599*****************988774 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.2   1.5e-08   4.7e-06     240     468 ..      10     225 ..       6     245 .. 0.78
   2 !    5.1   0.0    0.0019       0.6     614     661 ..     370     417 ..     364     438 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.5e-08
  TIGR03443 240 difaenaekhPdrtcvvetksalapssktreftykqideasnilahyllktGikrgdvvmvyasrgvdlvvavlGvlkaGatfsvidPayPParqtiylsvakPralivlekaGeldelvedyiedelelvteipalkl..qddGsleGgklekeetdvlasyeklkdkktgvvvGPdsnptlsftsGseGiPkGvkGrhfslayyfpWmakrfglsekdkftmlsGiahd 468
                d fa+n  k+ + t +  t+ +   +++ ++fty+++ + +  +a y+ + G      +++ ++  v  v+a +G++ aG +   + P+   +  +  l+ ++ +  +     G+lde+    ++    + ++i a+ +    +  l    ++k+ +dv+++++ +++    v    d ++t+ +tsGs+G PkGv     +++   + ++k ++++++d++     +ah 
  MMETSP1061-20121228|322_1  10 DYFADNVGKWGSETFM--TQPMGGGDANIKTFTYQEVMDEAKKVAGYIESLGYPAKSQIAICSKNCVYWVIADIGIMLAGHVSVPVYPTLTAETTNYILEHSEAKM-VF---IGKLDEKPWAAMKA--GIPSTIDAVSFplCPKDIL----QSKKWDDVISTSSPIAS---PVARTRDEMATIIYTSGSTGKPKGVMTSFGAMTDTTKGITKVMKITHDDRYISYLPVAHG 225
                5677777777776654..45555689999********999999*************************************98777777777777777787777664.33...49999987666665..5666666665510444333....44555799998888765...567789*********************************************999999995 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0019
  TIGR03443 614 klcgvGevGeiyvragGlaegylglpelnaekfvknwfvekekwkekd 661
                 +c + + Gei v++ G   gy ++pe++ae   ++ +v      + d
  MMETSP1061-20121228|322_1 370 VVCRIADDGEIQVKTPGKMMGYFKNPEATAETITEDGYVRTGDKGQVD 417
                58*****************************99999998876655555 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.045        14      81     117 ..      36      72 ..      28     116 .. 0.75
   2 !   13.5   0.0   1.4e-05    0.0044     232     257 ..     172     197 ..     164     247 .. 0.83
   3 ?    0.7   0.0      0.11        33     478     531 ..     412     465 ..     403     506 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.045
  TIGR02316  81 ertltyrqlhrevnalasalralgvrrgdrvliylpm 117
                 +t+ty+++ +e +++a  +++lg     ++ i   +
  MMETSP1061-20121228|322_1  36 IKTFTYQEVMDEAKKVAGYIESLGYPAKSQIAICSKN 72 
                589*********************8777776665555 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.4e-05
  TIGR02316 232 nepsyilytsgttgkpkgvqrdvggy 257
                +e + i+ytsg+tgkpkgv    g  
  MMETSP1061-20121228|322_1 172 DEMATIIYTSGSTGKPKGVMTSFGAM 197
                68899**************9988865 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.11
  TIGR02316 478 dwgirdedgytfilgrtddvinva.ghrlgtreieesvsshaavaevavvgvkde 531
                d g  dedg   i grt ++ + + g+ +    ie+ + s   v e a vg k +
  MMETSP1061-20121228|322_1 412 DKGQVDEDGRLRITGRTKEIFKTSkGKYVAPAPIENLLISNQYV-ELACVGGKSQ 465
                67788***************987538888889999999887765.7777876654 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   9.2e-05     0.029     268     332 ..     176     241 ..     131     251 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 9.2e-05
  TIGR01217 268 yilfssGttGvpkaivhsaGGtlvqhlkehvlhcdltdgdrllyyttvGwmmwnf..lvsglatGat 332
                 i+++sG+tG pk ++ s G  + +  k  +   ++t+ dr++ y  v   m  +  +v  l tG  
  MMETSP1061-20121228|322_1 176 TIIYTSGSTGKPKGVMTSFG-AMTDTTKGITKVMKITHDDRYISYLPVAHGMERWlgMVVPLQTGMQ 241
                699***********999986.678999***999************9888877666226788888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.51u 0.30s 00:00:00.81 Elapsed: 00:00:00.61
# Mc/sec: 1220.36
//
Query:       MMETSP1061-20121228|327_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-32  110.1   0.4    3.1e-17   60.7   1.3    3.0  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
    4.9e-15   53.4   0.0    4.5e-10   37.3   0.0    2.4  2  TIGR00678 holB: DNA polymerase III, delta' subunit
      9e-13   45.4   0.1      7e-08   29.2   0.0    2.7  3  TIGR00602 rad24: checkpoint protein rad24
    8.2e-09   32.6   0.5    1.4e-07   28.6   0.4    2.5  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    5.7e-08   29.6   0.0    1.5e-07   28.3   0.0    1.6  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
    3.2e-07   27.0   0.1    4.1e-05   20.1   0.0    2.2  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
      9e-06   22.7   0.0    2.7e-05   21.2   0.0    1.8  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00015   18.3   0.0    0.00033   17.2   0.0    1.5  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00062   17.2   0.0     0.0027   15.1   0.0    1.9  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0017   15.7   0.0     0.0032   14.8   0.0    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0034   14.0   0.0     0.0069   13.0   0.0    1.4  1  TIGR03689 pup_AAA: proteasome ATPase
     0.0067   13.4   0.2      0.072   10.0   0.0    2.2  2  TIGR00750 lao: LAO/AO transport system ATPase
     0.0092   12.3   0.3      0.027   10.7   0.0    1.7  2  TIGR00763 lon: ATP-dependent protease La
  ------ inclusion threshold ------
      0.016   12.2   0.0      0.028   11.3   0.0    1.3  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family


Domain annotation for each model (and alignments):
>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   1.5e-14   4.4e-12       6      62 ..       8      63 ..       4      81 .. 0.90
   2 !   60.7   1.3     1e-19   3.1e-17     118     343 ..     146     398 ..     136     408 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 1.5e-14
  TIGR02397  6 rkyrPktFedliGqehvvktLknaikknkiahayLfsGprGvGKTsiArilAkalNC 62
                +yrP+t++d+ +q+ vv+tLkna++++++ h  L++Gp G GKTs+A  l k l +
  MMETSP1061-20121228|327_1  8 ERYRPQTLDDVSHQTEVVSTLKNAVRTGRLPHL-LLYGPPGSGKTSVALALCKELWH 63
               69*****************************95.789***********999998865 PP

  == domain 2    score: 60.7 bits;  conditional E-value: 1e-19
  TIGR02397 118 ykvYiiDEvhmLsksafnaLLKtlEePpehvvFilaTtelekipetilSRcqrfdfkkikeekiverlkkilkkekik.........veeeaLeliarkaeGslRDalslldqlisl.........skg.......kitlekveellglvseekllelleailkkdleealklleellekgvdleklledliellrdlllvkktk..selleveeeeeeslkekaeklslekllellkilleaekelkvsenk 343
                +kv i+DE+ +++k+a  aL +++E   +   Fil+   + +i+e + SRc +f+f+ ++ + ++er++ki+k e+ k         + e  ++++   + G +R a++ l+ + +l         +++        i+++++ el gl  + ++ +l +++l++  +++   +++++++g++++ ll +l+e + ++  + +    +  ++++e e++  +   e l+l+++  l+  ++++++e ++ +++
  MMETSP1061-20121228|327_1 146 FKVIILDEADTVTKDAQAALRRIIEAHSRITRFILICNYVTRIIEPLASRCAKFRFQALPPATMKERITKIAKAEGSKddksenavvITERQIDAVLAVSGGDMRRAVTSLQSVQALlagqqgsagGNNagndsstVIDEDTIYELAGLPPDTAIESLYQSLLSHSFDTMQTAVKTVISNGYSVQMLLPKLLEKFIETDHLDELGraKLAIRIAEAEDKMNDGADEYLQLMTVCGLAVSVSAEHQEGQTMNQQ 398
                9***********************************************************************999876222122222455678889999********99998665542222222221112333333599******************************************************999998888887533334444444443334444455556655555555555555544444 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.5e-05    0.0073       3      38 ..      27      61 ..      25      72 .. 0.90
   2 !   37.3   0.0   1.5e-12   4.5e-10      96     171 ..     145     220 ..     127     240 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.5e-05
  TIGR00678  3 alkralekgrlahAlLfaGpeGvGkealaealakal 38
                lk+a+++grl+h lL++Gp+G+Gk+++a+al k+l
  MMETSP1061-20121228|327_1 27 TLKNAVRTGRLPH-LLLYGPPGSGKTSVALALCKEL 61
               68999********.688***************9987 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 1.5e-12
  TIGR00678  96 grrvviiedaealneaaaNaLLKtLEEPpektlflLisespekllpTirSRcqrlslqplseeelaevleeqgkee 171
                + +v+i+++a++ ++ a+ aL  ++E  +  t f+Li++ ++++++ + SRc ++++q+l  ++++e +++  k+e
  MMETSP1061-20121228|327_1 145 PFKVIILDEADTVTKDAQAALRRIIEAHSRITRFILICNYVTRIIEPLASRCAKFRFQALPPATMKERITKIAKAE 220
                689************************************************************9999998865554 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.4e-10     7e-08      72     168 ..       4      93 ..       1     100 [. 0.81
   2 ?   -0.8   0.0      0.29        85     363     417 ..     124     178 ..     106     191 .. 0.63
   3 !   12.7   0.0   2.5e-05    0.0073     268     328 ..     195     257 ..     192     269 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.4e-10
  TIGR00602  72 elWveKykPetqeelAvHKkKieeveewlkaqvLeskkkriLLitGPsGCgKsTvikiLsKelgikvqewlNpvllkeqkndeketlsleekfsrfl 168
                 +Wve+y+P+t++++    + ++ +++++++  L++     LL+ GP+G gK+ v   L Kel     +w   vl   +  de+++    ek+++f 
  MMETSP1061-20121228|327_1   4 IPWVERYRPQTLDDVSHQTEVVSTLKNAVRTGRLPH-----LLLYGPPGSGKTSVALALCKELWHP-TQWRRRVLE-LNASDERGIAVVREKIKQFA 93 
                59**************999999**************.....*********************9654.567666543.34444556666666666665 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.29
  TIGR00602 363 leenqviealsekdvelflkralkkilyikkadlneldssrlssilseleeltll 417
                +++n    + se+d + +    +k i++ +  ++++   + l  i++ +++ t +
  MMETSP1061-20121228|327_1 124 TKDNSDGMNTSESDEKKYPNPPFKVIILDEADTVTKDAQAALRRIIEAHSRITRF 178
                5555555555666666666666666666666666666555555555555555543 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 2.5e-05
  TIGR00602 268 rvsnikFNPiapTllkKfLkrIvtkeakk..kkeKilvpkktsvedlcaaesGDiRSAInsLQ 328
                r  + +F  + p  +k  + +I + e++k  k+e  +v   +++  ++a + GD+R A++sLQ
  MMETSP1061-20121228|327_1 195 RCAKFRFQALPPATMKERITKIAKAEGSKddKSENAVVITERQIDAVLAVSGGDMRRAVTSLQ 257
                56778999999***************99744678888999999******************** PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.4   4.7e-10   1.4e-07      25     176 ..      22     185 ..       8     270 .. 0.70

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 4.7e-10
  TIGR02928  25 eelakalkpilrgsrpsnvliyGktGtGKtavtkkvlkeleeaaeekdvrvstvyvnCqelsteyqvlvelvnql.....aeseeevpetGlstkevfeelvkeleered.................sliivLDEiDklvkkeadelLyeLsraeengdlekakvsvigisndl 176
                +e+++ lk+++r  r + +l+yG++G+GKt+v+ +++kel + ++ +    ++ ++n  + ++   v  ++ +       +   +   +tG+s++++f    ++  +++                    +i+LDE D + +k+a+  L ++  a  ++ +       i i n +
  MMETSP1061-20121228|327_1  22 TEVVSTLKNAVRTGRLPHLLLYGPPGSGKTSVALALCKELWHPTQWR---RRVLELNASDERGIAVVREKIKQFAslsvgKAGSHATTQTGVSKRDYFGASSETTTKDNSdgmntsesdekkypnppFKVIILDEADTV-TKDAQAALRRIIEA--HSRIT----RFILICNYV 185
                678899******99999************************999975...7889999999888777666665554778755566677899******9977655544332101111111111122222357777777777.66666666666555..44444....455555555 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0     5e-10   1.5e-07      53     108 ..       4      59 ..       2     112 .. 0.81
   2 ?   -2.1   0.0      0.81   2.4e+02     249     278 ..     190     223 ..     183     265 .. 0.67

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 5e-10
  TIGR02902  53 eplseksrpksfdeiiGqeeGikalkaalcGpnpqhviiyGppGvGktaaarlvle 108
                 p  e+ rp+++d++  q e + +lk a+      h+++yGppG Gkt+ a    +
  MMETSP1061-20121228|327_1   4 IPWVERYRPQTLDDVSHQTEVVSTLKNAVRTGRLPHLLLYGPPGSGKTSVALALCK 59 
                5899*************************999999*************98844333 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.81
  TIGR02902 249 palrsrcveiffrel....ekeeikeiakkaaek 278
                  l src +  f++l     ke i +iak    k
  MMETSP1061-20121228|327_1 190 EPLASRCAKFRFQALppatMKERITKIAKAEGSK 223
                5588999999999993222345566666654443 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.4e-07   4.1e-05     148     193 ..      10      55 ..       6      65 .. 0.90
   2 !    4.7   0.0    0.0064       1.9     337     376 ..     188     227 ..     164     295 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.4e-07
  TIGR02903 148 lrpralseivGqeraikallaklaspfpqhiilyGppGvGkttaar 193
                 rp++l+++  q   + +l   + +    h++lyGppG Gkt++a 
  MMETSP1061-20121228|327_1  10 YRPQTLDDVSHQTEVVSTLKNAVRTGRLPHLLLYGPPGSGKTSVAL 55 
                69***********************9999*************9984 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0064
  TIGR02903 337 inpalrsrcaevffepltpedikeivlkaaeklnvklaeg 376
                i   l srca+  f+ l p+ +ke ++k a+  + k ++ 
  MMETSP1061-20121228|327_1 188 IIEPLASRCAKFRFQALPPATMKERITKIAKAEGSKDDKS 227
                566799***************9999999887655544333 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   9.3e-08   2.7e-05      25      54 ..      32      61 ..      13      69 .. 0.80
   2 ?   -2.5   0.0       1.5   4.3e+02     241     280 ..     334     373 ..     312     377 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 9.3e-08
  TIGR00635 25 krkealdhvllyGPPGlGkttlakiiakel 54
                r   l h+llyGPPG Gkt++a  + kel
  MMETSP1061-20121228|327_1 32 VRTGRLPHLLLYGPPGSGKTSVALALCKEL 61
               477889*****************9999998 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.5
  TIGR00635 241 rklLkaliekfeggPvGletlaaalgedaetledvlePyL 280
                 klL+ +ie+ + +  G   la+ ++e ++ ++d  + yL
  MMETSP1061-20121228|327_1 334 PKLLEKFIETDHLDELGRAKLAIRIAEAEDKMNDGADEYL 373
                5788888888888888999999999999999999888887 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-06   0.00033     311     335 ..      36      60 ..      22      71 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.1e-06
  TIGR03922 311 rskHlllaGPPGtGkttiArvvaki 335
                r  Hlll GPPG Gkt++A ++ k 
  MMETSP1061-20121228|327_1  36 RLPHLLLYGPPGSGKTSVALALCKE 60 
                456******************9986 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.3e-06    0.0027      21      82 ..      20      82 ..       7     101 .. 0.75
   2 ?   -1.1   0.0      0.85   2.5e+02      90     119 ..     145     172 ..     136     212 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.3e-06
  TIGR03420 21 enaellaalrelaeakaerllylwGesgsGksHLLqAacaaaee.agksaiylplkelaqllv 82
               +++e++++l++++++ +  +l l+G++gsGk+    A+c+++ + ++ +  +l+l+   +  +
  MMETSP1061-20121228|327_1 20 HQTEVVSTLKNAVRTGRLPHLLLYGPPGSGKTSVALALCKELWHpTQWRRRVLELNASDERGI 82
               45899**********************************997541344555566665555555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.85
  TIGR03420  90 qaelvalDdvealagereweealfdlynrl 119
                 +++++lD+ +++++++  ++al  ++   
  MMETSP1061-20121228|327_1 145 PFKVIILDEADTVTKDA--QAALRRIIEAH 172
                57889999999999998..77776665544 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-05    0.0032      24      71 ..      40      87 ..      18      99 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-05
  TIGR02640 24 vhlrGPaGtGktslalhvakkrdrPvvllnGdaelktsdlvGeeagye 71
               + l GP G+Gkts+al++ k++  P  +     el++sd  G    +e
  MMETSP1061-20121228|327_1 40 LLLYGPPGSGKTSVALALCKELWHPTQWRRRVLELNASDERGIAVVRE 87
               3368************************99999999999766655555 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.3e-05    0.0069     219     240 ..      40      61 ..      34      74 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.3e-05
  TIGR03689 219 vllyGPPGcGktliakavansl 240
                +llyGPPG+Gkt +a a+ + l
  MMETSP1061-20121228|327_1  40 LLLYGPPGSGKTSVALALCKEL 61 
                79************99987766 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.084        25      28      58 ..      31      61 ..       7      64 .. 0.77
   2 !   10.0   0.0   0.00025     0.072     208     248 ..      64     105 ..      51     129 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.084
  TIGR00750 28 lpktGrahvvGltGvPGaGkstlveklieel 58
                 +tGr   + l G PG Gk  +  +l +el
  MMETSP1061-20121228|327_1 31 AVRTGRLPHLLLYGPPGSGKTSVALALCKEL 61
               35799999999*********99988888876 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00025
  TIGR00750 208 ekgWrPkvlktsavegrGikelvdaieehkkv.lkksGklee 248
                 ++Wr +vl+  a  +rGi+ + ++i+++ ++ + k+G ++ 
  MMETSP1061-20121228|327_1  64 PTQWRRRVLELNASDERGIAVVREKIKQFASLsVGKAGSHAT 105
                379**************************9862566777665 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   9.1e-05     0.027     354     375 ..      38      59 ..      23      64 .. 0.78
   2 ?   -1.3   0.1       0.4   1.2e+02      45     124 ..     124     225 ..      70     262 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.1e-05
  TIGR00763 354 kilclvGPPGVGKtSlaksiAk 375
                + l l+GPPG GKtS+a ++ k
  MMETSP1061-20121228|327_1  38 PHLLLYGPPGSGKTSVALALCK 59 
                5699************988776 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.4
  TIGR00763  45 kkdkeeeedvieeeedvykvgvlaq.ilelvklkdekskketlkvvleglrrikikelve......................keevlvvkveelkeeelekdd 124
                 kd+++  ++ e+ e+ y    +   il +++++  k  +++l+ ++e+++ri+   l+                       +   ++ +++++ + e +kdd
  MMETSP1061-20121228|327_1 124 TKDNSDGMNTSESDEKKYPNPPFKViILDEADTVT-KDAQAALRRIIEAHSRITRFILICnyvtriieplasrcakfrfqalPPATMKERITKIAKAEGSKDD 225
                44444444455555555655554430334444444.3445566666666666543333223444444455555555544444333344444444444444444 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.7e-05     0.028     159     179 ..      40      60 ..      33      67 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.7e-05
  TIGR01242 159 vllyGppGtGktllakavaee 179
                +llyGppG+Gkt +a a+ +e
  MMETSP1061-20121228|327_1  40 LLLYGPPGSGKTSVALALCKE 60 
                79**************99887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.47
# Mc/sec: 1294.62
//
Query:       MMETSP1061-20121228|331_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1757.10
//
Query:       MMETSP1061-20121228|330_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1183.50
//
Query:       MMETSP1061-20121228|332_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1124.78
//
Query:       MMETSP1061-20121228|328_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.44
# Mc/sec: 1970.84
//
Query:       MMETSP1061-20121228|329_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2556.19
//
Query:       MMETSP1061-20121228|333_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1239.90
//
Query:       MMETSP1061-20121228|336_1  [L=806]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.4e-109  363.5   1.0   4.5e-108  360.2   0.7    2.1  1  TIGR00958 3a01208: antigen peptide transporter 2
    1.1e-93  312.7   3.5      5e-93  310.5   2.4    1.9  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    2.1e-84  281.8   2.6    3.5e-83  277.8   1.8    2.1  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    9.9e-62  207.1   0.3    1.5e-61  206.5   0.2    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.8e-61  206.1   0.7      5e-61  204.6   0.5    1.6  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    4.5e-61  204.8   2.3    1.6e-60  203.0   0.1    2.0  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    5.7e-60  201.4   4.8    2.5e-59  199.3   3.3    1.9  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.2e-56  190.3   1.1    3.2e-56  188.8   0.8    1.6  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.8e-53  180.1   0.1    3.9e-53  179.0   0.1    1.5  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    9.4e-52  174.3   0.0    9.8e-51  170.9   0.0    2.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.8e-43  146.1   2.5    8.2e-42  141.2   1.8    2.3  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.5e-39  133.0   0.0    6.2e-39  131.6   0.0    1.6  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.8e-38  130.3   0.0      4e-38  129.2   0.0    1.5  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.1e-37  127.0   0.8    2.6e-37  125.7   0.6    1.5  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    5.7e-36  122.0   0.0    1.8e-35  120.3   0.0    1.8  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    5.9e-34  115.4   0.1    7.9e-33  111.8   0.1    2.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.2e-32  110.1   0.1    1.2e-23   81.4   0.0    2.2  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.2e-32  109.8   0.2    5.3e-31  105.9   0.2    2.1  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    3.6e-32  109.8   0.2    1.3e-20   71.7   0.4    2.1  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.7e-31  107.2   0.1    1.1e-17   61.9   0.0    2.2  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.4e-31  106.9   0.1    9.1e-21   72.2   0.3    2.3  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    3.2e-31  106.5   0.0    8.2e-31  105.1   0.0    1.6  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.6e-30  104.1   0.2    7.8e-30  101.9   0.2    1.9  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.6e-30  104.1   0.2    4.9e-18   63.3   0.1    2.3  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.2e-30  102.3   0.1    4.4e-20   69.8   0.1    2.3  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    5.6e-30  102.5   0.1    1.8e-29  100.8   0.0    1.7  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.8e-29  100.3   0.1    1.1e-28   98.3   0.1    1.8  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.3e-29   99.8   0.1      1e-15   55.6   0.3    2.2  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    4.8e-29   99.3   0.1    9.1e-29   98.4   0.1    1.5  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
      8e-29   98.6   0.3    1.7e-27   94.3   0.2    2.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.4e-28   97.7   0.1    1.2e-27   94.6   0.1    2.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.1e-28   97.4   0.2    4.1e-17   60.4   0.1    2.4  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      7e-26   89.1   0.2    5.9e-25   86.1   0.1    2.1  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.5e-25   87.6   0.1    4.6e-18   62.8   0.1    2.2  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    3.6e-25   86.4   0.1    8.5e-21   72.0   0.0    2.2  2  TIGR00955 3a01204: pigment precursor permease
    5.7e-25   86.0   0.1    1.6e-18   64.9   0.1    2.4  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    8.3e-25   85.4   0.0    1.8e-24   84.2   0.0    1.4  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.4e-24   84.5   0.1    1.3e-13   48.7   0.1    2.2  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      3e-24   83.8   0.0    1.1e-23   82.0   0.0    1.8  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    3.6e-24   83.2   0.1    1.8e-23   80.9   0.1    1.9  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    7.3e-24   82.3   0.1    8.5e-13   46.1   0.1    2.3  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.5e-23   81.3   0.0    2.8e-23   80.4   0.0    1.4  1  TIGR01978 sufC: FeS assembly ATPase SufC
    6.1e-22   76.1   0.1    2.4e-11   41.5   0.0    2.7  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.6e-20   71.6   0.1      1e-19   69.0   0.0    1.9  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.3e-20   69.6   0.2    9.4e-12   41.0   0.0    2.8  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      7e-20   69.4   0.3    5.3e-19   66.5   0.2    2.0  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
      6e-19   66.1   0.3    1.4e-18   64.8   0.2    1.5  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    6.1e-19   66.0   0.1      1e-13   48.8   0.1    2.4  2  TIGR01288 nodI: nodulation ABC transporter NodI
    7.7e-19   66.0   0.3    8.3e-13   46.2   0.2    2.4  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
      1e-18   64.9   0.1    2.1e-09   34.2   0.3    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    4.8e-16   56.3   0.2    1.7e-10   37.9   0.0    2.5  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    9.9e-16   54.4   0.0    1.6e-15   53.7   0.0    1.2  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
      5e-15   52.9   0.2    2.1e-08   31.0   0.4    3.0  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      1e-14   52.6   0.1    1.1e-07   29.6   0.1    2.2  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.5e-11   39.7   0.0    2.6e-11   38.9   0.0    1.2  1  TIGR01257 rim_protein: rim ABC transporter
    4.2e-11   39.8   0.0    7.6e-11   39.0   0.0    1.3  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.4e-09   34.6   0.6    1.2e-07   28.1   0.2    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.2   0.7  6.3e-110  4.5e-108     131     709 ..     162     781 ..     122     783 .. 0.87

  Alignments for each domain:
  == domain 1    score: 360.2 bits;  conditional E-value: 6.3e-110
  TIGR00958 131 agasekeaeeeqsetadlllrLLkllkrdlkllllalvllvlsvlgevliPkytgrvidtllqdks.vealakaiflltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPqlels........g.......tlapknl.....eGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltkte.d....eevtaaakaanahdFis..........elekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe...sksaksrtvlliahrLstve..kadkilvlkkgsvvelGthkqLmeked.vykq 709
                + ++eke+e+  ++ ++    +++l++  + + +  + +l+l +++  ++P y g+ i+ + + ++   +la+a++ l++ s++  l++g+rg  f +   r n +ir +l +sll Q+++Ffd+n+tG l SRl sD +++ + +s ++nv+lr+  + + + + ++ +SprL++ t+  + lv  ++ v+g   + l+e+vq++ a a+ vae      +T+r F   + E+++f+e+  + l+l++ +a ay +   +++ l+++++v++L+       +g +   +L++F++Y+  + e  +e++  + ++++avGas+ vFe++ R P ++ +        g       + +p+++     + ++  ++V+  Y    d+p l +   ++ +G+ valVG sGsGKS++   + ++Y+P +G++ lDg +l+ +      ++v +V+qEP +f  s+ eN+ YG++k + d    + v +a  ++++ d ++          el  + dt +ge G  lsgGq+qr+AiARA++r+P+vL+LDe t+ALD+e+e+ +     +  ++ +++++++hrL +++  ++++++vl kg++ve G+ ++L ++e+ +y+ 
  MMETSP1061-20121228|336_1 162 KAKPEKEEESMWTKMNEQRKNIMTLAGYTMSFVVPSFGFLLLGAYMTSVVPSYWGKCIQCVATLTAtKAQLAEALIGLGVSSILAGLFTGIRGSLFWIGGCRANYNIRVKLHRSLLLQEAAFFDTNETGYLLSRLNSDVNKIGQVISYHINVVLRQFAQFVFGSMYLFRISPRLSMYTFAGILLVAYLSAVYGDLARDLAEKVQDTFADATAVAETSFTMSETIRAFDGVDIESDKFEEAQFSALELEEVQAWAYGTHKFMSDTLQSVLQVAMLVACWAVGRAGGLPAADLTTFMFYTGFVLESSNEVGDQWAKIQQAVGASSSVFELITRVPAIKDPspgdangaGalttsaaEATPQTIgltteKPVIAMNNVTLEYDA-MDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYGIEKDDiDpetgDAVYNARWRTKVFDCLKlagltvtpgnELGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGslkMAMQQTKSMVMVTHRLGVIRslEVNRVIVLDKGKIVEEGHPEDLLKNEGsLYAG 781
                444555545444455556677889999999*******************************998775789****************************************************************************************************************************************************************************************************************999****************************************************99753222222222222111123343322222256899********76.689*************************************************************************************9876542222567777777777776532222222222445569*********************************************99887645456678999***********9444789*********************9978875 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.5   2.4     7e-95     5e-93      26     575 ..     200     786 ..     178     787 .. 0.82

  Alignments for each domain:
  == domain 1    score: 310.5 bits;  conditional E-value: 7e-95
  TIGR02204  26 aLviaaavtLslplavrklide.GfskeesellneafalllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlv..lWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPa.................qpkalpakv.rgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGr.pda....sdeeveaaakaaeadefis..........klpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkg.rttlviahrLatvl..kadrivvldkGriveqGthaeLia.kggLyarlarLq 575
                +L+++a +t ++p+   k i      ++ +++l ea+  l v  ++ +l t +r  l    G r   ++r +++  ll  ++affd+n++g +lsrl +d++ + +v+   + + lr+   ++ + + l+ +s++l+    + + lv     ++g   r l+ + qd++ada+a a+ + +  +t++a+   + e+++f++a  +a+e     ++a a  +   +   + +v  v  l +      ag l a +L+ f++y+ +v  s   +++ ++++q+a Ga   ++el+   + ik P+                 +p+++   + +  i++++v+++y a  d++al+g+d ++ +G++valvG sG+Gks +l+ +lrfydP+sG+i ldG dlr+l ++e  +++++v+q++ +f  s +en+ yG   d     + ++v++a   ++  + ++          +l    dt +Ge g +LsGGq+qr+aiarai+++ ++LLLde t+aLd+ese++v  +l+ +m++ +  +++ hrL  ++  + +r++vldkG+ive+G+ ++L++ +g+Lya lar q
  MMETSP1061-20121228|336_1 200 FLLLGAYMTSVVPSYWGKCIQCvATLTATKAQLAEALIGLGVSSILAGLFTGIRGSLFWIGGCRANYNIRVKLHRSLLLQEAAFFDTNETGYLLSRLNSDVNKIGQVISYHINVVLRQFAQFVFGSMYLFRISPRLSMYTFAGILLVAYLSAVYGDLARDLAEKVQDTFADATAVAETSFTMSETIRAFDGVDIESDKFEEAQFSALELE--EVQAWAYGTHKFMSDTLQSVLQVamLVACWAVGRAGGLPAADLTTFMFYTGFVLESSNEVGDQWAKIQQAVGASSSVFELITRVPAIKDPSpgdangagalttsaaeaTPQTIGLTTeKPVIAMNNVTLEYDA-MDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYGIeKDDidpeTGDAVYNARWRTKVFDCLKlagltvtpgnELGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQtKSMVMVTHRLGVIRslEVNRVIVLDKGKIVEEGHPEDLLKnEGSLYAGLAREQ 786
                56677777777777666666541344667889999999999999999*******999999999*********************************************************99999899999*********************************************************************9999998875..45566666666666566665443103333333469*****************************************************99633322222222211111233333222144689********87.67*************************************************************************************624551111344555555554444444222221112224555689*******************************************************98725556689****99622589******************9983578******976 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.8   1.8   4.9e-85   3.5e-83      88     567 ..     266     784 ..     256     787 .. 0.85

  Alignments for each domain:
  == domain 1    score: 277.8 bits;  conditional E-value: 4.9e-85
  TIGR02203  88 rdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvq.aqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfall.......DsppekdeG..tralervr......Gk......vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaay.lkdlv.............dklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlv.iahRLstie..kaDrivvlddGkiverGtheeLlarnG.lYasLhk 567
                 ++R+kl   ll   +a+fd +++g llsrl +d++++ ++++  + v++r+ ++ ++  ++l+ +s +l++   + + ++a+l+ v+ +  r + +++q++ +++t v+e +      ++ f+g + e+ +f++++ + ++l+   a a + ++ +++ + sv l v +l+a +   +ag l + +l++f+     ++++  ++ +  ak+q+ + a+ svf+l+       D +p   +G    ++  ++      G       + ++nvt +y   dr+al++++ ++ +G++valvGrsGsGks++++ + RFy+p+sG+i lDg+dl+ l+ ++  ++v++v q+ ++F  +++env Yg +++  + e  +a+ +a   +++              ++l   ldt++Ge g  LsGGqRqR+aiaRa++++  +L+LDe t+aLD+ese++v  +L+  m++  ++v + hRL  i+  + +r++vld+Gkive+G  e+Ll+++G lYa L +
  MMETSP1061-20121228|336_1 266 YNIRVKLHRSLLLQEAAFFDTNETGYLLSRLNSDVNKIGQVISYHINVVLRQFAQFVFGSMYLFRISPRLSMYTFAGILLVAYLSAVYGDLARDLAEKVQDTFADATAVAETSFTMSETIRAFDGVDIESDKFEEAQFSALELEEVQAWAYGTHKFMSDTLQSV-LQVAMLVACWAvGRAGGLPAADLTTFMFYTGFVLESSNEVGDQWAKIQQAVGASSSVFELItrvpaikDPSPGDANGagALTTSAAEatpqtiGLttekpvIAMNNVTLEYDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYGIEKDDIDPETGDAVYNARwRTKVFdclklagltvtpgNELGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVmVTHRLGVIRslEVNRVIVLDKGKIVEEGHPEDLLKNEGsLYAGLAR 784
                589**********************************************************************************************************************************************9*************99988.555555555541678999*****************************************993332222222333333113333323211111132333344899************************************************************************************************886655555555555554133333111111222222345566689*****************************************************9998776665389******933478**********************9967999865 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.5   0.2     2e-63   1.5e-61      85     530 .]     265     743 ..     262     743 .. 0.87

  Alignments for each domain:
  == domain 1    score: 206.5 bits;  conditional E-value: 2e-63
  TIGR02868  85 lgelRvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldak.................vevaeasapaaeaaas.....ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpda..............tdeellaaLervgLadwlra.LpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthrl 530
                  ++Rv+++++L  +++a+    ++G lL+rl +Dv+++ +++   i  ++  ++  +   + ++ +s+ + +   a++l+ + + ++v   +ar  +++++   +  +a + +     ++++++   +   ++ eea+ +++++e+ +a+a +  + ++  +  +  +++l++  +   +g l ++ l+ +++ +  + e  + + +  ++++++  a + + e++                    + +a+++ p+     +     ekp + +++++ +y+  ++ +l+gv+ ++  G rva+vG+sG+GKs +l +++++ dp++G++ ldg ++ sl++se +  vs+++q++H+F  ++ eN++ + ++                   + + L+ +gL     + L   ldt++gegg++lSGG+rqR+a+ARa++ + +vllLDEPt+ LD e e++++  L  a ++ + +v+vthrl
  MMETSP1061-20121228|336_1 265 NYNIRVKLHRSLLLQEAAFFDTNETGYLLSRLNSDVNKIGQVISYHINVVLRQFAQFVFGSMYLFRISPRLSMYTFAGILLVAYL-SAVYGDLARDLAEKVQDTFADATAVAETSFTMSETIRAFDGVDIESDKFEEAQFSALELEEVQAWAYGTHKFMSDTLQSVLQVAMLVACWAVGRAGGLPAADLTTFMFYTGFVLESSNEVGDQWAKIQQAVGASSSVFELITRVpaikdpspgdangagalTTSAAEATPQ-----TiglttEKPVIAMNNVTLEYDAMDRpALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYGIEKDdidpetgdavynarWRTKVFDCLKLAGLTVTPGNeLGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKmAMQQTKSMVMVTHRL 743
                5689*******************************************999999999999999********999988888876655.66778888888889999999999999999999999****99******************************999999999888999888888899***************9999999999999999999999998888887766677777788876555443444444444.....145555****************9999*********************************************************************************99765445777334343333334455567777777665442666789****************************************************955666677******96 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.6   0.5     7e-63     5e-61     188     708 ..     227     782 ..     162     784 .. 0.79

  Alignments for each domain:
  == domain 1    score: 204.6 bits;  conditional E-value: 7e-63
  TIGR03796 188 eaqewlrplllgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqln.dkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsgl...esdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeelee..........eeekaaeseek......ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltl..wdetipe...edlvrAakDAaihdvi.....larpg.....gyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr...rRgctciivaHRLstiR..dcdeiivlerGkvverGtHeellakeg.aYarL 708
                 ++  l   l+gl ++ +l +++t ++ +l      +   ++  ++ + +l   + ff+   +g + sR++++ +k+++++s ++  ++ ++   vf  + ++  ++ l++ ++a  ++ + + ++      d+++++q + + +++va ++  + et++A      esd f++   + a  l++ q+   a  + + + ++l+s+ ++++lv   +    g l    l +f   +   le  +++ ++ +++q+  +  + + ++++     +  +          ++ +aae+  +      +  +  + ++nvt  y a+++p +++++ ++ +G rvAlvG sGsGks + + +  +y+p+sG+i +Dg ++++++r+  a+ +++v+q+  +f  ++ +n+      + i     +++ +A     + d +     + +pg     ++++++ egg+ lsGGqrqR+ iARa++++P +L+lDE t+aLD+e Ek+++  l+   +   ++++v+HRL  iR  +++++ivl++Gk+ve G  e+ll++eg  Ya L
  MMETSP1061-20121228|336_1 227 ATKAQLAEALIGLGVSSILAGLFTGIRGSLFWIGGCRANYNIRVKLHRSLLLQEAAFFDTNETGYLLSRLNSDvNKIGQVISYHINVVLRQFAQFVFGSMYLFRISPRLSMYTFAGILLVAYLSAVYGDLARDLAEKVQDTFADATAVAETSFTMSETIRAFDGvdiESDKFEEA-QFSALELEEVQA--WAYGTHKFMSDTLQSVLQVAMLVACWAVGRAGGLPAADLTTFMFYTGFVLESSNEVGDQWAKIQQAVGASSSVFELITRVPAIKDPSpgdangagalTT-SAAEA--TpqtiglTTEKPVIAMNNVTLEYDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYgiEKDDIDPetgDAVYNARWRTKVFDCLklaglTVTPGnelglELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKmamQQTKSMVMVTHRLGVIRslEVNRVIVLDKGKIVEEGHPEDLLKNEGsLYAGL 782
                445566677899**********************************************************986489***************************************9999999999999*********************************75411156665543.344555555555..555566778999999999999987777778899999999999988888888888888888888887777666555544433333222233444443222.22222..1335666666788***********************************************************************************************84321223332101123444444444444331111134444333336899************************************************999854467899************55589*******************99776257766 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.1       0.2        15     275     417 ..     321     463 ..     233     499 .. 0.70
   2 !  203.0   0.1   2.3e-62   1.6e-60     462     691 ..     527     774 ..     506     777 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.2
  TIGR03375 275 vllfllvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRal 417
                +++  + ++ i++ l +  ++ ++lv  ++ +     ++lae+ + + a  +a+   s++  eti+a  +      k+e++  +  +++  +     +   ++ ++q + +va++v+   +  +g l    L   +  +g +l
  MMETSP1061-20121228|336_1 321 FVFGSMYLFRISPRLSMYTFAGILLVAYLSAVYGDLARDLAEKVQDTFADATAVAETSFTMSETIRAFDGVDIESDKFEEAQFSALELEEVQAWAYGTHKFMSDTLQSVLQVAMLVACWAVGRAGGLPAADLTTFMFYTGFVL 463
                444555678899999999999999999999998888888999999999999999999**********************9887777766555555555566678888899999988644444555555555555555555555 PP

  == domain 2    score: 203.0 bits;  conditional E-value: 2.3e-62
  TIGR03375 462 lkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap......aaed........eellraaelaGvtefv.kkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrtslLel..vdriivldkGrivadGpkdevlea 691
                 k  i+++nv+++Y  ++++aL+ v  +i +G++va++Gr GsGKs++l+ +l++y+p++G++ ldg d+r + +++  +++++v+q+++ f  +l +N+ +g +      ++ d        ++++  ++laG+t    ++    ld+ ige+G+sLSgGQrq va+aRa++++p++llLDEPt+alD++se+k++ +Lk +++  k +v+vtHr  +++   v+r+ivldkG+iv +G  + +l++
  MMETSP1061-20121228|336_1 527 EKPVIAMNNVTLEYDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYGIEkddidpETGDavynarwrTKVFDCLKLAGLTVTPgNELGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQqTKSMVMVTHRLGVIRSleVNRVIVLDKGKIVEEGHPEDLLKN 774
                5567899*********************************************************************************************998653333333333222222225789999****986541555667899****************************************************999989************9854599**************99999875 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.3   3.3   3.4e-61   2.5e-59     146     685 ..     202     786 ..     182     787 .. 0.75

  Alignments for each domain:
  == domain 1    score: 199.3 bits;  conditional E-value: 3.4e-61
  TIGR03797 146 llgtllglvvPlatgilldeviP.daerslllqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasramg.vsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkl...lelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsflafntaf.......gsflkavtsl...aetlievlavvplyerakP........ileaepEvdeekvdpgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas...l...tldeawea.........armagle.eDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesle.klkvtR..iviAHRLSTir..nadrilvleeGrvveqGsyeeLlakeG.lfaelarRQ 685
                llg+ ++ vvP   g  ++ v   +a++++l++  + l ++++ a lf+ +++        +++++++  +   LL  +a+fF + ++g L+sr ++ v++i +++s  +   l      ++  + l+  s +l++ + + +l+++ + +v g l     +k+   ++ + +++ + + + + i  +     e+  f + + +  e +++++ a  ++++++ + + +  ++++v  +++ +  +  + +l +f+ ++  +       g   + +++    ++++ e+++ vp+ +   P        + ++ +E++ +++   + +  i++++vt +Y++  +  L+ v  +i  G+ va+vG SGsGKS++lr +L F  P+sG +  DG dl++l  ++   ++ +V Q+ ++++ s++en++ g +   +   t d++++a         +++agl     +++ + l T i egg +lSGGQrQR+ iAra++r P++ll+DE T ALD ++ + V+ sl+ +++ t+  +++ HRL  ir  + +r++vl++G++ve+G+ e+Ll++eG l+a lar Q
  MMETSP1061-20121228|336_1 202 LLGAYMTSVVPSYWGKCIQCVATlTATKAQLAEALIGLGVSSILAGLFTGIRGSLFWIGGCRANYNIRVKLHRSLLLQEAAFFDTNETGYLLSRLNSdVNKIGQVISYHINVVLRQFAQFVFGSMYLFRISPRLSMYTFAGILLVAYLSAVYGDLARDLAEKVqdtFADATAVAETSFTMSETIRAFDGVDIESDKFEEAQFSALELEEVQAWAYGTHKFMSDTLQSVLQVAMLVACWAVGRAGGLPAADLTTFMFYTGFVlessnevGDQWAKIQQAvgaSSSVFELITRVPAIKDPSPgdangagaLTTSAAEATPQTIGLTTEKPVIAMNNVTLEYDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYGIEkddIdpeTGDAVYNArwrtkvfdcLKLAGLTvTPGNELGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKmAMQQTKsmVMVTHRLGVIRslEVNRVIVLDKGKIVEEGHPEDLLKNEGsLYAGLAREQ 786
                6888999999999999888765428999*************************99999999*********************************8765********9876555544444445555678889999999998888888888888877766555550005566677778888888898888888999999876555556666666666666666666666666777777888887775555555555544433300000002222223332000333444444455555555533333332333344444444444555678***********************************************************************************************98654322231114444333322222222288999982456899*********************************************************8446666544899*******944579*********************9994566777766 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   0.8   4.4e-58   3.2e-56     184     692 ..     238     786 ..     207     787 .. 0.80

  Alignments for each domain:
  == domain 1    score: 188.8 bits;  conditional E-value: 4.4e-58
  TIGR01846 184 allavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvr.eleqirefltgsaltvvldllfvvvflav.mffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasa.vepqfkrrWerqlaayvaasfkvtklgn..lasqaieliqkltaalllwfGaklvlkGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkia.......lerlGdild.sPteassagkaa......lpelkG......aiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdniala......kPaisee........kviaaaklaGah.dfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlr.eickgrtviiiahrlstvr..aadrilvlekGkivesGkheellak.eglyaklyqqq 692
                +l + +++   ++++r  lf     r + ++  kl+r ll    ++f++  +G  ++r+  ++++i + +    + vvl  +  +vf ++ +f+ sp+l +     +++ + ls + + + r   e+  ++ a+a+++   s t  eti+a   v+ +  +  e q++a      ++   g+  + s +++ + ++++++  w    +  +G l   +l +f  ++g v +    +   W   qq+  a       ++r+  i d sP +a+ ag+++       p+  G       i ++n+++ y+    + ls +  +i +G+ + +vG+sGsGks + + + r+y P  Gr+ +dg dl  +  +    +v++v qe  +f  s+++n+  +      +P+  ++        kv    klaG      +el    +t++ge G +lsGGqrqr+a+ara++ +P++l+lde t+ald ese+ +   l+ ++ + + +++++hrl  +r  +++r++vl+kGkive+G+ e+ll++ ++lya l ++q
  MMETSP1061-20121228|336_1 238 GLGVSSILAGLFTGIRGSLFWIGGCRANYNIRVKLHRSLLLQEAAFFDTNETGYLLSRLNsDVNKIGQVIS-YHINVVLRQFAQFVFGSMyLFRISPRLSMYTFAGILLVAYLSAVYGDLARDLAEKVQDTFADATAVAETSFTMSETIRAFDgVDIESDKFEEAQFSALELEEVQAWAYGThkFMSDTLQSVLQVAMLVACW---AVGRAGGLPAADLTTFMFYTGFVLESSNEVGDQWAKIQQAVGAsssvfelITRVPAIKDpSPGDANGAGALTtsaaeaTPQTIGlttekpVIAMNNVTLEYDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYGiekddiDPETGDAvynarwrtKVFDCLKLAGLTvTPGNELGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKmAMQQTKSMVMVTHRLGVIRslEVNRVIVLDKGKIVEEGHPEDLLKNeGSLYAGLAREQ 786
                33344566667999********************************************9647999999886.56899999999999976535788*******999999998888887777777666667778999999999*********97526666666666677776666666666665114455566666666666665...45568********************************99754334455558999999875677777666554111111344434222222699**********9999*******************************************************************************98653322224543321222223337888899***76145678888899************************************************999983567889*************44479********************985679**999887 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.0   0.1   5.4e-55   3.9e-53     280     524 ..     469     750 ..     465     757 .. 0.82

  Alignments for each domain:
  == domain 1    score: 179.0 bits;  conditional E-value: 5.4e-55
  TIGR02857 280 lgaqyHakaegvaaaealvevld...aeeqpeaekapltaaass.....................slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenir..larkdaseae............vkealeragldel.vkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrlalaelad 524
                +g q+   +++v a+++++e++    a + p++++a+ +                           + ++nv++ y   + pal++v+ ++ +g +valvG SG+GKs++l+ +l+f +p +G+i+++g +l++l++++  ++++ v Q+P++f+ +++en+   + + d + +             v + l+ agl+    ++l+  l+t+iGe+g+ LSgGqrqR+a+Ara++r+ ++lllDEPta+LD+e+e++v+ +l+ ++ +++++++v+Hrl +++ ++
  MMETSP1061-20121228|336_1 469 VGDQWAKIQQAVGASSSVFELITrvpAIKDPSPGDANGA----GalttsaaeatpqtiglttekpVIAMNNVTLEYDAMDrPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLygIEKDDIDPETgdavynarwrtkVFDCLKLAGLTVTpGNELGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMqQTKSMVMVTHRLGVIRSLE 750
                666777777777777777777774332222222222111....12233455677777888888889**********99999*********************************************************************************943445555554477877777777777888888885431467888899*****************************************************9987899*********9988654 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.9   0.0   1.4e-52   9.8e-51     190     701 ..     227     777 ..     200     785 .. 0.79

  Alignments for each domain:
  == domain 1    score: 170.9 bits;  conditional E-value: 1.4e-52
  TIGR01193 190 klkntlgiislglilayilqqvlsyikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrf.tdaskiidalastilslfldlsilvivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvirekltlGqlltfnallsyflnPleniinlqpklqaarvannrlnevy...................lvdsefkekkkltelenlngdievndvsysyG.ygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqe.............eikkaveiaeik.ddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenl.lkl.kdktiifvahrlsvak..ksdkiivldeGkiieqGshkellkenGf 701
                ++k +l+   +gl +  il  +++ i+  l+ + g r   +i ++  + l+    +ff t  +G ++sr+ +d++ki + ++  i  ++  ++  v  ++ l +   +l + ++  i + a +  ++    + l +++ ++ a  ++    + +  eti+++ + + + +k ++   + le + ++a a  + + +  +l+ +l+v +l +   +  ++ l    l tf    ++ l+  +++ +  +k+q+a  a   + e+                    l  s  + + ++  l++ +  i +n+v+ +y  + +++l+ ++ +i + ++++lvG sGsGks++ + +++f++++sG+i+l+g +l+ + ++e   +++ + qeP++f  s++en+l g +++  +              ++ + +++a +  +  ++l l ++t++ e + s+sgGq+qr+a+ara++ + +vl+lde t+ ld   ekk+v  l + + + k++++v+hrl v +  +++++ivld+Gki+e+G+ ++llk++G 
  MMETSP1061-20121228|336_1 227 ATKAQLAEALIGLGVSSILAGLFTGIRGSLFWIGGCRANYNIRVKLHRSLLLQEAAFFDTNETGYLLSRLnSDVNKIGQVISYHINVVLRQFAQFVFGSMYLFRISPRLSMYTFAGILLVAYLSAVYGDLARDLAEKVQDTFADATAVAETSFTMSETIRAFDGVDIESDKFEEAQFSALELEEVQAWAYGTHKFMSDTLQSVLQVAMLVACWAVGRAGGLPAADLTTFMFYTGFVLESSNEVGDQWAKIQQAVGASSSVFELItrvpaikdpspgdangagaLTTSAAEATPQTIGLTTEKPVIAMNNVTLEYDaMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYGIEKDDIDPetgdavynarwrtKVFDCLKLAGLTvTPGNELGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLkMAMqQTKSMVMVTHRLGVIRslEVNRVIVLDKGKIVEEGHPEDLLKNEGS 777
                555666666788888899999999999999999999999999999999999999***************868*********9999999999************99999988888877776666666666666666555555444433333467788****************99888888888888888889999999999999999999988888999**********************************99998888764211111111111111111122222333333334455666799********725678**********************************************************************************976553332011111111111144555666666523457788999**************************************************988555525699*********97623689*********************9984 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.2   1.8   1.1e-43   8.2e-42      60     542 ..     247     773 ..     217     774 .. 0.70

  Alignments for each domain:
  == domain 1    score: 141.2 bits;  conditional E-value: 1.1e-43
  TIGR01842  60 glleavRskvlvrigekldkalnkkifkaaieatl..erkkkesl...qalrDldqlrqFltgtgliaffDlPwlpiyllvvfllhpylGllalvgavvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikgeitaGmiiagsilvgraLaPidqaievWkqfsaarkaykrlkelleelpareealk.lPepegelevenvslvppeekk.....................ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaR..feenadae...kvieaaklagvheli....l......rlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllel..vdkilvlkdGalkafGereevlk 542
                gl+  +R  ++   g + + +++ k++++ + +++    ++++++   ++ +D++++ q ++ +  + +     ++   + +f + p l + +++g++++  l+ +   + +  +++ + +   a+  ++++   +e i+a+  ++    ++e+ + +al+ +++ + + g+ + +s +l  vlq+++l     +   g + a  +       g +L   +++ ++W ++++a  a + + el++++pa ++  +   +  g l+ ++ +++p +                        + l g++ ++ +G+ +a++G sgsGkss+ r+++  + p+sG+++lDg dl+   r +   ++  + q+ ++f+ ++ en+     ++++d+e   +v++a   ++v + +    l      +l    dt igegG +LsgGqrqR+a+aRa+ ++P++++LDeP a LD+e e+ ++  lk + ++  ++v++thr  ++++  v++++vl++G++ + G+ e++lk
  MMETSP1061-20121228|336_1 247 GLFTGIRGSLFWIGGCRANYNIRVKLHRSLLLQEAafFDTNETGYllsRLNSDVNKIGQVISYHINVVLRQFAQFVFGSMYLFRISPRLSMYTFAGILLVAYLSAVYGDLARDLAEKVQDTFADATAVAETSFTMSETIRAFDGVDIESDKFEEAQFSALELEEVQAWAYGTHKFMSDTLQSVLQVAMLVACWAVGRAGGLPAADLTTFMFYTGFVLESSNEVGDQWAKIQQAVGASSSVFELITRVPAIKDPSPgDANGAGALTTSAAEATPQTIGLttekpviamnnvtleydamdrPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYgiEKDDIDPEtgdAVYNARWRTKVFDCLklagLtvtpgnELGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSleVNRVIVLDKGKIVEEGHPEDLLK 773
                55555666666666666666666666666554333112222222211022346666666666655555555444444455568888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888765555555555555555555555666666666666666666666666666666665555433332202233333333333333222111233344444444444444444********************************************************************************9642145677775333688888888888865222221111113444579************************************************************************864489**************9999887 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.6   0.0   8.6e-41   6.2e-39       2     233 ..     531     774 ..     530     778 .. 0.84

  Alignments for each domain:
  == domain 1    score: 131.6 bits;  conditional E-value: 8.6e-41
  TIGR00972   2 levknlklfygeke..alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgik.......dkkeldeiveesLkkaalw....d....evkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeli.qeLkkkytivivthnmqqaarv.sdktaffleGelveegeteqifek 233
                ++++n++l y      al+ v+ +i++ + +al+G sG+Gks++lr++ r+ d       +G++ l+g+d+ +      e  ++v +v q+p  fpms+++nv yg++  +i          ++ +  v + Lk a+l     +    e+ +++ + + sLsGGq+qr++iara+  eP+vlLlDePt+aLD+++ +k+   +   ++++  +v+vth +   + +  ++++++ +G++veeg++e+++++
  MMETSP1061-20121228|336_1 531 IAMNNVTLEYDAMDrpALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPS-----SGRIELDGDDLRSL--TRSETASHVSIVEQEPHVFPMSLMENVLYGIEKDDIDpetgdavYNARWRTKVFDCLKLAGLTvtpgNelglELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLkMAMQQTKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLKN 774
                5677888888754444*************************************98.....9**********887..56677899***********************998875211111145667778889999999863344323336778888999***************************************98765515788889**********98877358999**************99987 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.0   5.5e-40     4e-38     331     576 ..     527     792 ..     511     801 .. 0.82

  Alignments for each domain:
  == domain 1    score: 129.2 bits;  conditional E-value: 5.5e-40
  TIGR01192 331 vkgavefrdisfefanssq.gvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgreda.....tdeevveaakaaaasdfie..........krlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaid.alrknrttfiiahrlstvr..eadlvlfldqgrliekgsfdeliqkdgrfak.llrasglliee 576
                 k  + +++++ e+    +  +  v  ++ +g+ va+vg +g+gk++++  + r ydp+sg+i +dg d+ ++tr      ++ v q+  ++  s+ en+  g e+      t + v++a   +   d ++          +   + dt +ge g  lsgg+rqr+aiarai+++  +l+lde t+ald e+e +v  ++  a+++ ++  +++hrl  +r  e + v+ ld+g+++e g  ++l +++g +++ l r+ g++  e
  MMETSP1061-20121228|336_1 527 EKPVIAMNNVTLEYDAMDRpALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYGIEKDdidpeTGDAVYNARWRTKVFDCLKlagltvtpgnELGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKmAMQQTKSMVMVTHRLGVIRslEVNRVIVLDKGKIVEEGHPEDLLKNEGSLYAgLAREQGITKLE 792
                5566788888888876654267889999************************************************************************999764311222556677777666666665422211111112223579************************************************999874788999999**********444567*******************99999776277888997544 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.7   0.6   3.6e-39   2.6e-37     971    1521 ..     199     787 ..     181     788 .. 0.77

  Alignments for each domain:
  == domain 1    score: 125.7 bits;  conditional E-value: 3.6e-39
  TIGR00957  971 illflcnsvsalasnywlslwtddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnet.llgvsvirafe....eqerfi..iqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfav..........isrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetekeapwqieetap...psswp...ksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnl.........dpfs...qys...deevwlalelahlkdf.vsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedc.tvltiahrlnti..mdytrvlvldkgevaefdapsellqqrgify.smakdag 1521
                  +l l+  ++++   yw       a   +t+++    l   +   il g+          igg  a   + ++l  + l    +ff++  +g l+ r+  +++ + +v++  i ++l  + + +   + ++  +p +++      ll  ++   y   +r+l      + +   +  +et ++    iraf+    e+++f+  + s l ++e q   y +    ++++  l+ v +  +l  a +av          ++   + +g+v  s     +  a ++  v  ss +   i  v  +k+ s  + +    +  +a    p++     ++  + + n +l y       l  ++ +i  g++v +vgr+g+gkss+  +++r  + + g i +dg ++  +   +  ++++i+ q+p +f  sl  n+         dp +    y      +v+ +l+la l       l  +ld +  egg  ls gqrq v +ara++r  ++l+lde taa+d e+++ +  +++  +++  +++ ++hrl  i  ++  rv+vldkg++ e + p +ll++ g +y ++a++ g
  MMETSP1061-20121228|336_1  199 GFLLLGAYMTSVVPSYWGKCIQCVATLTATKAQLAEALIGLGVSSILAGLFTGIRGSLFWIGGCRANYNIRVKLHRSLLLQEAAFFDTNETGYLLSRLNSDVNKIGQVISYHINVVLRQFAQFVFGSMYLFRISPRLSMYTFAGILLVAYLSAVYGDLARDLAEKVQDTFADATA-VAETsFTMSETIRAFDgvdiESDKFEeaQFSALELEEVQAWAYGT---HKFMSDTLQSVLQVAMLV-ACWAVgragglpaadLTTFMFYTGFVLESSNEVGDQWAKIQQAVGASSSVFELITRVPAIKDPSPGDANGAGALTTSAAeatPQTIGlttEKPVIAMNNVTLEYDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVlygiekddiDPETgdaVYNarwRTKVFDCLKLAGLTVTpGNELGLELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTkSMVMVTHRLGVIrsLEVNRVIVLDKGKIVEEGHPEDLLKNEGSLYaGLAREQG 787 
                 478888888888888888888777777777777777777778888899988888888899************************************************************998888888888888888888888888899999*******997544444444444.45551555668****866667889972246899999999988864...455555555554433333.3344400000000014444445555544444444455677888999999999************999998877776654111554431113345789999****8888889***********************************************************************999977633333332227743111233111457788899999875414567889***********************************************99999998877654167889*****99556889***********************977736899887 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   2.5e-37   1.8e-35       2     234 ..     531     772 ..     530     779 .. 0.84

  Alignments for each domain:
  == domain 1    score: 120.3 bits;  conditional E-value: 2.5e-37
  TIGR02315   2 levenlskvypn.gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglael........aakra....dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakky.adrivglkageivfdgasseld 234
                + ++n++ +y+  ++ al  v+++i +G+ va++G+sG+Gks +lr++ r+ ++ssg+i+l+g ++++l ++e     ++++++ qe   +  ++ +envL g        ++   +++ + ++k +++L+  gl+ +         ++r      +LsGGq+qRvaiaRa++++p+++l DEP+a+LD +s k+v+  lk   ++++  v+v  H++ + ++   +r++ l +g+iv +g++++l 
  MMETSP1061-20121228|336_1 531 IAMNNVTLEYDAmDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSET---ASHVSIVEQEP-HVFPMSLMENVLYGIEKDDIDPETGDAVYNARWRTKVFDCLKLAGLTVTpgnelgleLDTRIgeggRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMV-THRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLL 772
                78899999998636789**************************************************9988765...56888998886.567899********99999999999999************9988775431111111123443222268*******************************************9877776665555.6***999998469**************999875 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.1   1.1e-34   7.9e-33       1     214 []     530     761 ..     530     761 .. 0.86

  Alignments for each domain:
  == domain 1    score: 111.8 bits;  conditional E-value: 1.1e-34
  TIGR02673   1 iielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkk........eeeiqkrveevlelvgle............dkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelverv.kkrvlelekgk 214
                +i +++v++ey  ++  aL+ v+ +i  g+ + l+G+sG+Gk+++l+ +l    ps+G++e++g+d+++l+++e+++   ++++v q+ ++++ ++ +env   +e +  +        +++++++v + l+l gl+             ++ +  ++lsgG +qRvaiaRai+++P++ll DePt  lD+e +++++  lk + ++  +++++th   ++++   +rv+ l+kgk
  MMETSP1061-20121228|336_1 530 VIAMNNVTLEYDaMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETAS---HVSIVEQEPHVFP-MSLMENVLYGIEKDDIDpetgdavyNARWRTKVFDCLKLAGLTvtpgnelgleldTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLeVNRVIVLDKGK 761
                689********868999*********************************************************996...9********9987.7899****999876544111111115679999***9998665322221111112267888899*****************************************************************99678999999985 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   1.1e-08     8e-07       2      67 ..     532     599 ..     531     621 .. 0.86
   2 !   81.4   0.0   1.7e-25   1.2e-23     146     237 ..     683     774 ..     670     777 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 1.1e-08
  TIGR03005   2 risdvtkrfgelt..vldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhm 67 
                 +++vt  ++ +    l g++ ++ +G++val+G sGsGks++lr ++ +   + G+i+++g+ l  +
  MMETSP1061-20121228|336_1 532 AMNNVTLEYDAMDrpALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSL 599
                56778888887753479**********************************************98765 PP

  == domain 2    score: 81.4 bits;  conditional E-value: 1.7e-25
  TIGR03005 146 qlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfaref.adrvlffdkGkiveeGkpdeifrk 237
                 lsGGq+qrvaiara+  +p+vll+de+t+ald e  ++v+  l+ +a ++  +m++vth++g  r +  +rv+ +dkGkiveeG+p++++++
  MMETSP1061-20121228|336_1 683 SLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLK-MAMQQTKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLKN 774
                69***************************************9986.66677779************99459******************9986 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.9   0.2   7.3e-33   5.3e-31       1     215 [.     530     761 ..     530     762 .. 0.83

  Alignments for each domain:
  == domain 1    score: 105.9 bits;  conditional E-value: 7.3e-33
  TIGR00960   1 mikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalr...i...iG..vkgreieervsaalekvGlk............dkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskr.krvltlskGk 215
                +i +++v+ +y +  ++al +v  +i  G+ v lvG sG+Gks++l+ +l    ps+G+i + g dl  l   e++    ++ iv q+ +++   + ++nv   ++   i    G  v    ++++v  +l+  Gl+             +  +    lsgG++qrvaiara++++P++ll dePt+ ld+e  ++++  l+   ++   +++ th   ++ s + +rv++l+kGk
  MMETSP1061-20121228|336_1 530 VIAMNNVTLEYDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETA---SHVSIVEQEPHVFP-MSLMENVLYGIEkddIdpeTGdaVYNARWRTKVFDCLKLAGLTvtpgnelgleldTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLEvNRVIVLDKGK 761
                6899*******************************************************************99987...69*******99875.6899***9998722231111211233468899999999999863222111111112333445689**************************************************************9865389******98 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0     2e-11   1.5e-09      16     104 ..     551     634 ..     546     660 .. 0.90
   2 !   71.7   0.4   1.9e-22   1.3e-20     121     223 ..     673     775 ..     667     801 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 2e-11
  TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkrar 104
                vd+++ + +++al GrsGsGk+s++r +     p++g+i+ldg  l + ++    +    +v++v qe  +Fp +s  en+ YG+++ +
  MMETSP1061-20121228|336_1 551 VDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTR----SETASHVSIVEQEPHVFP-MSLMENVLYGIEKDD 634
                677777779**********************************99988766....777788************.7999******98765 PP

  == domain 2    score: 71.7 bits;  conditional E-value: 1.9e-22
  TIGR02142 121 iehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarl.adrvvvledGrvkaagkleevlask 223
                ++  +    ++LsGG +qRvai+RA++ +P++Ll+DeP aaLD+++ k+++  L+   +++k  +++v H l  +  l  +rv+vl++G++  +g++e++l+++
  MMETSP1061-20121228|336_1 673 LDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTK-SMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLKNE 775
                55566667899*******************************************99888887.799**********99569******************98765 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0     1e-13   7.2e-12      11      99 ..     542     629 ..     532     633 .. 0.90
   2 !   61.9   0.0   1.6e-19   1.1e-17     137     227 ..     683     774 ..     671     779 .. 0.93

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1e-13
  TIGR03873  11 aggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalG 99 
                a  r+ + +vd +  +G   +l+G  GsGks +lr +     p+ G+++l+g dl++l+r + a +v++veq+ +   p+s  + v+ G
  MMETSP1061-20121228|336_1 542 AMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPH-VFPMSLMENVLYG 629
                5578899*****************************************************************865.5788888888776 PP

  == domain 2    score: 61.9 bits;  conditional E-value: 1.6e-19
  TIGR03873 137 tlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasv.cdhvvvldgGrvvaaGppaevltp 227
                 lsGG+rqrv +ara+ +eP++llldePt  ld ++  ++++ ++  +++   +v+  h l    s+ +++v+vld+G++v  G+p+++l  
  MMETSP1061-20121228|336_1 683 SLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLKN 774
                79********************************************99999999*******9887653899****************99976 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   2.6e-10   1.9e-08       4      97 ..     533     628 ..     530     641 .. 0.83
   2 !   72.2   0.3   1.3e-22   9.1e-21     120     224 ..     671     776 ..     665     784 .. 0.88

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 2.6e-10
  TIGR03864   4 veglsfayg..krralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrap.kealarlGvvfqqstlDldlsveqnlry 97 
                +++++ +y   +r al++v+ ++ +g+ vaL+G  G+Gks ++  + r y+ ++g+i++ G dlr+ + +e  +++ +v q++ +   +s+++n+ y
  MMETSP1061-20121228|336_1 533 MNNVTLEYDamDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTrSETASHVSIVEQEPHV-FPMSLMENVLY 628
                55666666511689***************************************************96515677789999888765.56777777776 PP

  == domain 2    score: 72.2 bits;  conditional E-value: 1.3e-22
  TIGR03864 120 lglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeve..aedrlvvlhkGkvlaqGaaaelaaead 224
                l+l  r  e  r+L+GG+r+rv iara++ eP++LLlDe+t+ LD es +++v +++  ++++  s++  th +  ++  + +r++vl+kGk++ +G +++l ++++
  MMETSP1061-20121228|336_1 671 LELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQT-KSMVMVTHRLGVIRslEVNRVIVLDKGKIVEEGHPEDLLKNEG 776
                67889999999*********************************************9988655.56667899999998334689******************98765 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.1   0.0   1.1e-32   8.2e-31       2     222 ..     532     775 ..     531     780 .. 0.81

  Alignments for each domain:
  == domain 1    score: 105.1 bits;  conditional E-value: 1.1e-32
  TIGR00968   2 lianvskrfGdfq..alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleir........kkdkakikakveellelvqle.........klgdry...psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqe..ealevadrivvlekGkieqvgsaeevydep 222
                 ++nv+ ++  +   al  vd ++ +G+ val+G sGsGks++lr++  + +p sGri l+G d   ++      ++ +v q+  +f+ +++++n+ +G+e             +a+ + kv + l+l +l+         +l+ r       lsGGqrqrva+ara+  epqvllldep +ald++  k++   l+   ++ k + v+vth      +lev +r++vl+kGki + g +e++ ++ 
  MMETSP1061-20121228|336_1 532 AMNNVTLEYDAMDrpALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSetASHVSIVEQEPHVFP-MSLMENVLYGIEKDdidpetgdAVYNARWRTKVFDCLKLAGLTvtpgnelglELDTRIgegGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTK-SMVMVTHRLGviRSLEV-NRVIVLDKGKIVEEGHPEDLLKNE 775
                6677777776553339************************************************9887654115689**********7.89*********987555655544556788999*9****99986434333322344554222458***************************************999988777765.689****8761155665.79****************998875 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.9   0.2   1.1e-31   7.8e-30       1     196 [.     563     779 ..     563     787 .. 0.80

  Alignments for each domain:
  == domain 1    score: 101.9 bits;  conditional E-value: 1.1e-31
  TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvte..vpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkae........ikervkeaLelvqle.....efa...krkp....sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtm.sdriavlrkGkiaqigepeeiyeePanef 196
                l+G sGsGk+ +Lr++  + +++sG+i ldg d+ +  ++    +v +v q+  +fP m+++env +g+  + ++ ++         +++v + L+l  l+     e++   + ++      lsGGqrqrva+ara++ +P++LLlDep +aLD +  +++   lk+  ++    +v+vth      ++  +r+ vl kGki+  g+pe++ ++  +++
  MMETSP1061-20121228|336_1 563 LVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSltRSETASHVSIVEQEPHVFP-MSLMENVLYGIEKDDIDPETgdavynarWRTKVFDCLKLAGLTvtpgnELGlelDTRIgeggRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQT-KSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLKNEGSLY 779
                68*******************************986114566789************.***********99987755411111111556799999998775222222222122233222267*******************************************9876664.689*****98776665359******************988776666 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.3e-12   1.7e-10      16      79 ..     543     606 ..     530     629 .. 0.85
   2 !   63.3   0.1   6.9e-20   4.9e-18     129     220 ..     671     763 ..     668     764 .. 0.89

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.3e-12
  TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssnerak 79 
                ++   l+gv+ +i++g+ va+vG sGsGks +l ++  + +p+sG+++l+G +l++l+ +e+a+
  MMETSP1061-20121228|336_1 543 MDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETAS 606
                455689***************************************************9998874 PP

  == domain 2    score: 63.3 bits;  conditional E-value: 6.9e-20
  TIGR02211 129 vglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkld..rvlelkdgkla 220
                ++l+ ri +    lsGG+rqrvaiara++ +P+++l dePt+ ld+++ kk+   l ++  ++  ++++vth l +++ l+  rv+ l +gk++
  MMETSP1061-20121228|336_1 671 LELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSL-KMAMQQTKSMVMVTHRLGVIRSLEvnRVIVLDKGKIV 763
                57999999999*****************************************9977.57788899************98642278888888876 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     9e-10   6.5e-08       8      70 ..     542     604 ..     533     617 .. 0.87
   2 !   69.8   0.1   6.2e-22   4.4e-20     133     199 ..     682     748 ..     667     757 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 9e-10
  TIGR03608   8 fkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskka 70 
                  d+  l+ ++ +i +G+ va+vG+sGsGKs +L  + ++ +++sg++ l+g++ ++l+++++
  MMETSP1061-20121228|336_1 542 AMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSET 604
                45788999*********************************************9888887765 PP

  == domain 2    score: 69.8 bits;  conditional E-value: 6.2e-22
  TIGR03608 133 yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek 199
                 +lsgG++qRva+ar++++e++++l DEPt++LD++++++v+  lk   ++ k +++vtH   v + 
  MMETSP1061-20121228|336_1 682 RSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRS 748
                58**********************************************************9888664 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   2.5e-31   1.8e-29       9     223 ..     548     777 ..     544     785 .. 0.84

  Alignments for each domain:
  == domain 1    score: 100.8 bits;  conditional E-value: 2.5e-31
  TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideq........erkekalealklvdl...e......eyedry...PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrl.gdrivilkaGeivqvGtPdeilrnPan 223
                +  vd +i+ G+ + ++G sGsGks+++r + r+ +P++G+i +dG+d+  +   e        +++v q+  +fP m++++n+ +g+e  +id +        + + k  + lkl +l   +      e   r       lsGG++qrv +ara+  eP++ll+de+ +ald    +++   l k+  +  k++v++th l     l  +r+++l +G+iv  G P+++l+n   
  MMETSP1061-20121228|336_1 548 LSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSET----ASHVSIVEQEPHVFP-MSLMENVLYGIEKDDIDPEtgdavynaRWRTKVFDCLKLAGLtvtPgnelglELDTRIgegGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSL-KMAMQQTKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLKNEGS 777
                567899***********************************************9999....899************.89**********999886522222221458999******9985432322222223333111568***********************************99999987.56778889*********976666348*********************9765 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   0.1   1.5e-30   1.1e-28       3     225 ..     529     774 ..     527     782 .. 0.80

  Alignments for each domain:
  == domain 1    score: 98.3 bits;  conditional E-value: 1.5e-30
  TIGR03265   3 eylsieeiekefeaft..alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlpp..qkrdyGivfqsYaLfPnltvaeniayGLknkklk........reevaerveelLelvglsgs.........eeky...PgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealsl.aDrivvmnkgkieqvgtPeeiYeq 225
                + +++++++ e++a+   al+ ++ ++  g+ v+l+G sG Gk+++Lr +  + ++++G+i l+g d+ +l+   ++    iv q   +fP + + en+ yG+++  ++        +++ +++v  +L+l gl+ +         +++       lsGGq+qrva+ara++  P++LLLDeP +aLD+   +k+   lk   ++ +   +mvth      sl  +r++v++kgki   g Pe++ ++
  MMETSP1061-20121228|336_1 529 PVIAMNNVTLEYDAMDrpALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRseTASHVSIVEQEPHVFP-MSLMENVLYGIEKDDIDpetgdavyNARWRTKVFDCLKLAGLTVTpgnelglelDTRIgegGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTK-SMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLKN 774
                5677888888998654338*************************************************9886511567899**********.899********98766522222222567789999*****9997441111111111222111457*******************************************97655554.679*****9988887459*****************99876 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   2.8e-13     2e-11       3     104 ..     533     634 ..     531     647 .. 0.87
   2 !   55.6   0.3   1.4e-17     1e-15     129     220 ..     681     772 ..     672     778 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 2.8e-13
  TIGR03410   3 venlevaYgese..vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealk 104
                ++n+++ Y++    +l++v+ ++ +g+ va++Gr g Gk+++l++++  ++ +sG+iel+g+d+++l+ +e ++  ++ v q  ++fp ++ +en+  g+e+ +
  MMETSP1061-20121228|336_1 533 MNNVTLEYDAMDrpALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETAS-HVSIVEQEPHVFP-MSLMENVLYGIEKDD 634
                688899998754339**************************************************998877765.69**********9.79********99765 PP

  == domain 2    score: 55.6 bits;  conditional E-value: 1.4e-17
  TIGR03410 129 gGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfalel.adrylvlerGevvaegekeeld 220
                g  LsGGq+q +aiaRa++ eP++llLDePt  +     k++   +k   + +  ++++v + l   ++l  +r++vl++G++v+eg+ e+l 
  MMETSP1061-20121228|336_1 681 GRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQ-QTKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLL 772
                447*********************************999999999876655.4667888999999999873589*************988765 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.1   1.3e-30   9.1e-29      13     219 ..     540     762 ..     530     763 .. 0.87

  Alignments for each domain:
  == domain 1    score: 98.4 bits;  conditional E-value: 1.3e-30
  TIGR02982  13 kgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgaseke...lvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavglee............rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildv..adrivkmedGkl 219
                 +++ +  l  ++ +i +g+ v l G sGsGk  +l  +  +    +G +++ g++l+ ++++e    v +  +  ++f    + ++l   +   +  e  +++ ++  ++k+ + l+  gl              r+    + lsgGq+qrvaiara++ +P+++l dePtaald++s ++vv  l+ +a +q+ ++++vth   ++     +r++ +++Gk+
  MMETSP1061-20121228|336_1 540 YDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSEtasHVSIVEQEPHVFPMSLMENVLYGIEKDDIDPETGDAVYNARWRTKVFDCLKLAGLTVtpgnelgleldtRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLK-MAMQQTKSMVMVTHRLGVIRSleVNRVIVLDKGKI 762
                4567788999*****************************99***************7776655411167888999999999888899999999999999999999999999********9999889999***9999*************************************************996.7999**********975543212489*******98 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.2   2.4e-29   1.7e-27       2     208 ..     532     763 ..     531     767 .. 0.77

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 2.4e-29
  TIGR01277   2 klddviyeykhl..p..lefdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapye..rpvsmlfqennlfahltvrqniglGlk.....pg...lklnavqkekvedvarqvGia.........dylerlpe...elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaai.asqvvvvedGkik 208
                ++++v++ey+ +  p     d ++ +G+rva++G sG+Gks++l  +  f  p sG i +++ d  +++ +e    vs++ qe  +f+ +++ +n+  G++     p       na  + kv d  +  G++         ++  r+ e   +lsGGqrqrva+ar ++re  +llldep +ald    ++++  +k +a ++ +++++vth+l  +++  +++v+v+++Gki 
  MMETSP1061-20121228|336_1 532 AMNNVTLEYDAMdrPalSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSEtaSHVSIVEQEPHVFP-MSLMENVLYGIEkddidPEtgdAVYNARWRTKVFDCLKLAGLTvtpgnelglELDTRIGEggrSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLK-MAMQQTKSMVMVTHRLGVIRSLeVNRVIVLDKGKIV 763
                6778888776542221135789999***********************************9998766655541168***********9.688999999986222224322246899999***9988877764222221211233466543338**********************************9999999876.566778899*******999875489*********96 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.1   1.7e-29   1.2e-27       3     218 ..     549     776 ..     547     781 .. 0.81

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 1.7e-29
  TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnP....rsaf.nPlltikeqlletlkaleklskqakelivealeavgLeea..eev.......lkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvael.adevavmekGkivergtvkelfqePk 218
                ++v+ ++  g  +alvG sGsGks    ++l + d     +sG+i ldg +l +l  +    +++++ q+P    +s + n l+ i++  ++        +++ + ++ ++l+ +gL+ +  +e+       + +    lsGG  qRv ia a++ e+ +l+ DePt++lD  ++++v+  l+ +  ++  +++++th lgv+  l  + v+v++kGkive+g++++l+++  
  MMETSP1061-20121228|336_1 549 SGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYD----PSSGRIELDGDDLRSLtrSETASHVSIVEQEPhvfpMSLMeNVLYGIEKDDIDPETGDAVYNARWRTKVFDCLKLAGLTVTpgNELgleldtrIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLK-MAMQQTKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLKNEG 776
                678899999************************99....689**********99976777899*******8222233333555667777666655566666777889******99997432233332211113445679*******************************************7.55567789***********9984689*****************998765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   4.8e-11   3.4e-09      23      83 ..     544     604 ..     532     613 .. 0.91
   2 !   60.4   0.1   5.7e-19   4.1e-17     148     235 ..     681     768 ..     667     777 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 4.8e-11
  TIGR02769  23 rkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqr 83 
                 ++ l++v+ ++ +G  val+GrsG+Gks + r +l +  P++G++   G+dl  l r+++
  MMETSP1061-20121228|336_1 544 DRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSET 604
                567899**************************************************99865 PP

  == domain 2    score: 60.4 bits;  conditional E-value: 5.7e-19
  TIGR02769 148 PrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkf.aqrvlvldeGqiveeikv 235
                 r lsGGq qr++iara+  eP++++lde  + ld     +++  lk   q+   +++++th l +++++  +rv+vld+G+ivee + 
  MMETSP1061-20121228|336_1 681 GRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQ-TKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHP 768
                5789*****************************************9876655.5799***********99569************9755 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.1   8.1e-27   5.9e-25       4     202 ..     556     774 ..     553     779 .. 0.75

  Alignments for each domain:
  == domain 1    score: 86.1 bits;  conditional E-value: 8.1e-27
  TIGR03771   4 dkGellgllGpnGaGkttllrailglikvakGsvkvagkssrk.....grreiGyvpqrhefawdfpidveqtvlsGrag.liGllrrpkk..adfaa.vadalervklt.....el...adrpvGe....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdl..aeavatcdrvvllngrvvadgapdqlqda 202
                 +G+ ++l+G  G+Gk+++lr++l +  ++ G+++++g   r+       +++  v q       fp+++ + vl G  +  i +     +  a +++ v d l+ + lt     el    d  +Ge    lsGGqrqrv +ara+  +p++llldep + ld  s++++v+ ++   ++ ++++m+th l   +++++   +vl  g++v +g+p++l + 
  MMETSP1061-20121228|336_1 556 YSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSltrseTASHVSIVEQE---PHVFPMSLMENVLYGIEKdDIDPETGDAVynARWRTkVFDCLKLAGLTvtpgnELgleLDTRIGEggrsLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLgvIRSLEVNRVIVLDKGKIVEEGHPEDLLKN 774
                6799*********************************9875541111134556666554...56799**999999996541455444333211344322555566555542222233222366788666679*********************************************************9932466777766777789**********9765 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.1e-07   7.8e-06     269     378 ..     520     619 ..     502     636 .. 0.79
   2 !   62.8   0.1   6.4e-20   4.6e-18     157     258 ..     672     773 ..     668     796 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.1e-07
  TIGR03269 269 kekevevgediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyp 378
                ++  +  ++++i +++v  +y ++dr    a+ +v+ +++ ++   lvG sG+Gk+++ + ++   +p+sG++e+  Gd+   +t+        +  ++ ++ qe +++p
  MMETSP1061-20121228|336_1 520 QTIGLTTEKPVIAMNNVTLEYDAMDRP---ALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELD-GDDLRSLTRSE------TASHVSIVEQEPHVFP 619
                556678899*****************7...55667789**********************************9975.77766555444......5555666666666665 PP

  == domain 2    score: 62.8 bits;  conditional E-value: 6.4e-20
  TIGR03269 157 klehrithiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedl.sdkaillekGeiveeGepeevva 258
                +l+ ri    r lsGG++qrv +ar +++ep +ll dept +ld ++ k v   lk a++++  s+v+ +h   vi  l +++ i+l+kG+iveeG+pe++++
  MMETSP1061-20121228|336_1 672 ELDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQT-KSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLK 773
                6788999999*********************************************9887765.59999999999**99956899**************99865 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00015     0.011      40      91 ..     547     595 ..     514     630 .. 0.74
   2 !   72.0   0.0   1.2e-22   8.5e-21     155     255 ..     674     772 ..     651     774 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00015
  TIGR00955  40 llknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGek 91 
                 l +v   ++sG+ +A++G SG+GK+ +l ++       +   g + l+G  
  MMETSP1061-20121228|336_1 547 ALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSS---GRIELDGDD 595
                577788899******************9987654433332...235666655 PP

  == domain 2    score: 72.0 bits;  conditional E-value: 1.2e-22
  TIGR00955 155 dtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                dtrig  g  ++lSgG+r+R+a+a  ++ +P++L++DEPT+ LDs s ++vv  Lk   q+ k+++++ H          +++i+l++G++v +G+pe+++
  MMETSP1061-20121228|336_1 674 DTRIGEGG--RSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLEVNRVIVLDKGKIVEEGHPEDLL 772
                8****777..6************************************************************988777789*****************9876 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.8e-06    0.0002       5      77 ..     544     617 ..     539     636 .. 0.87
   2 !   64.9   0.1   2.2e-20   1.6e-18     123     215 ..     682     775 ..     670     803 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.8e-06
  TIGR01188   5 efkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd.evRrsigvvpqkasv 77 
                +  A+ gv+ +++ g+ ++l+G  G GK+ +++ +     P+sG+  + G D+ +  + e   ++++v q+  v
  MMETSP1061-20121228|336_1 544 DRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRsETASHVSIVEQEPHV 617
                5579******************************99****************9988775788899999998776 PP

  == domain 2    score: 64.9 bits;  conditional E-value: 2.2e-20
  TIGR01188 123 ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkl.adrvaiidkGkiiaedtpeeLKerv 215
                + +sgG+r+r+ +a+++i +P+vl LDEPt  LD+++ +++   ++   ++ +++++ th l  + +l  +rv+++dkGki+ e+ pe+L ++ 
  MMETSP1061-20121228|336_1 682 RSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLKNE 775
                578***************************************9999999999999999******9998569*****************986644 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   2.6e-26   1.8e-24      11     230 ..     533     774 ..     528     784 .. 0.78

  Alignments for each domain:
  == domain 1    score: 84.2 bits;  conditional E-value: 2.6e-26
  TIGR03258  11 leslrvayga..rvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppyk..rnlallvqnyalfphlkveenvafGlrarkqs........kaliaervadalklvqls.....daaarl.......paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvl.adkillmkeGslialGetralyda 230
                ++++++ y+a  r  l  +  +i +G+ +al+G+sGsGk+++lr +  f  ++ Gr+ + + dl  l        ++++ q+  +fp + ++env +G+              +a    +v d lkl +l+     + + +l          lsGGq+qrva+ara++ +p+vllldep +ald++  ++vv  lk   ++    ++++vth       l  +++ ++ +G++++ G++++l ++
  MMETSP1061-20121228|336_1 533 MNNVTLEYDAmdRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSEtaSHVSIVEQEPHVFP-MSLMENVLYGIEKDDIDpetgdavyNARWRTKVFDCLKLAGLTvtpgnELGLELdtrigegGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTK--SMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLKN 774
                5556666665335678889999******************************************99876541167999*********.6899*******87643212221111444556799*****99973222223333311112223579******************************************99888765..6789999988777763589999************999765 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   8.8e-11   6.3e-09       7      93 ..     547     629 ..     542     658 .. 0.86
   2 !   48.7   0.1   1.8e-15   1.3e-13     126     187 ..     682     743 ..     669     746 .. 0.94

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 8.8e-11
  TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafg 93 
                +l+g++ ++  g+++al+G+ G+Gks +l+++     P sG++ ldG++l    ++  e+  +v++v q+p   +f  +++e+v +g
  MMETSP1061-20121228|336_1 547 ALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRS--ETASHVSIVEQEPH--VFPMSLMENVLYG 629
                89**********************************************99765554..55678999999885..7777777777666 PP

  == domain 2    score: 48.7 bits;  conditional E-value: 1.8e-15
  TIGR01166 126 hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdv 187
                + lsgG+++rvaia a++ +p+vllldePta ld++ +++++  l+   ++ k++v+ th +
  MMETSP1061-20121228|336_1 682 RSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRL 743
                579*********************************************************65 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   1.5e-25   1.1e-23       3     233 ..     531     775 ..     529     781 .. 0.84

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 1.5e-25
  TIGR03411   3 Levedvsvsfdgfk..alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLe............ekadkkaglLshGqkqwLeigmllvqepkllllDePvaGm.tdeetektaellkelakersvvvvehDmefvrela.ekvtvlheGkvlaeGsldevqade 233
                + +++v+ ++d++   al+ ++ ++ +g+  +++G  G+Gk+ +l  +     p++G++ ++g+dl++l+ +e a + ++   q+p vf  ++ +en+   +++d    ++  a  +++ ++++ ++l+l gL+            ++  +   +Ls Gq+q++ i+  +++ep++lllDeP+a + +++e++ +++l  ++++++s+v+v h ++ +r+l+ ++v vl +Gk++ eG+ +++ ++e
  MMETSP1061-20121228|336_1 531 IAMNNVTLEYDAMDrpALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASH-VSIVEQEPHVFP-MSLMENVLYGIEKDDIDPETGDAVYNARWRTKVFDCLKLAGLTvtpgnelgleldTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALdSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLEvNRVIVLDKGKIVEEGHPEDLLKNE 775
                6789999****996559****************************************************99998865.78889******8.6899***999999988777777777777777777777766554111111111111445555678******************************955678889999*9**********************9789*************988877765 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.1   2.5e-25   1.8e-23      14     230 ..     543     773 ..     530     786 .. 0.78

  Alignments for each domain:
  == domain 1    score: 80.9 bits;  conditional E-value: 2.5e-25
  TIGR02314  14 gdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentp........kekikrkvtellalvgls...........dkk.dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkri.cdevavidkgeliekgtvseifs 230
                 d+   al  v+  +  g+ + ++g sg+gks+++r +  +  p+sg + +dg dl +l+ +e +    ++ ++ q   ++   ++++nv   +e ++          + + ++kv + l l gl+           d +       lsggq+qrvaiara+  ep+vll de t+ald  + + ++  lk   ++ + +++++th + v++++  ++v v+dkg+++e+g   +++ 
  MMETSP1061-20121228|336_1 543 MDR--PALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETA---SHVSIVEQEPHVFP-MSLMENVLYGIEKDDIDpetgdavyNARWRTKVFDCLKLAGLTvtpgnelglelDTRiGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQ-TKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLK 773
                444..58999999***********************************************99876...46777777766554.5678888888887653311111111446689**********98333332222221121233568*******************************************976655.567899*********985799************98877765 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   6.9e-11     5e-09      18      69 ..     542     593 ..     533     614 .. 0.86
   2 !   46.1   0.1   1.2e-14   8.5e-13     149     213 ..     683     747 ..     674     757 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 6.9e-11
  TIGR02324  18 GvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrh 69 
                 + +p+l+ v+ ++ +G+ val G+sG+Gks++l+++ + Y p+sgri +  
  MMETSP1061-20121228|336_1 542 AMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDG 593
                58899******************************************98765 PP

  == domain 2    score: 46.1 bits;  conditional E-value: 1.2e-14
  TIGR02324 149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevre 213
                  sGG +qRv iara+i +  +LLLdePta+Ld+   k vv  +k a ++  +++ + h   v +
  MMETSP1061-20121228|336_1 683 SLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIR 747
                57****************999**************************************765544 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.0   3.8e-25   2.8e-23       8     230 ..     540     769 ..     531     779 .. 0.88

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 3.8e-25
  TIGR01978   8 vsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklellelde........elleRslneG..fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdve 230
                    d++ L+g++ ++ +G+ +a++G+ GsGks + +++     y  +sG+i+l+g+dl +l+  e a + + +  q p+  p   +++ l    +   + +  +++  + +++++ + l+l  l+         el +R    G   sGG ++r  i +  + eP++ +LDe  + lD ++ k v+  ++   +++k+++++th   ++++++ + v vl +G+iv++G+ e
  MMETSP1061-20121228|336_1 540 YDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLR--FYDPSSGRIELDGDDLRSLTRSETASH-VSIVEQEPHVFPMSLMENVLYGIEKDDIDPETGDAVYNARWRTKVFDCLKLAGLTVtpgnelglELDTRIGEGGrsLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLEVNRVIVLDKGKIVEEGHPE 769
                4456899*****************************99985..67789******************9976.88999*******9999999988877777777777799999**999999888777655577677666666555446589*********************************************************************************875 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0        10   7.2e+02      39      70 ..     152     182 ..     151     189 .. 0.75
   2 !   31.3   0.0   4.5e-10   3.3e-08       9      71 ..     541     603 ..     532     637 .. 0.81
   3 !   41.5   0.0   3.3e-13   2.4e-11     126     186 ..     682     742 ..     668     753 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 10
  TIGR01189  39 KttLLRilaGLlkpesGevelndkelaeqrde 70 
                Kt + R+l+G  kpe+ e ++  ++++eqr++
  MMETSP1061-20121228|336_1 152 KTYIRRLLSGKAKPEKEEESMW-TKMNEQRKN 182
                888999********99887777.555666644 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 4.5e-10
  TIGR01189   9 eRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdel 71 
                    r  l+g++ ++ +G+ ++++G+ G+GK+++LR++     p+sG++el++++l   + + 
  MMETSP1061-20121228|336_1 541 DAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSE 603
                44568899********************************************99987765443 PP

  == domain 3    score: 41.5 bits;  conditional E-value: 3.3e-13
  TIGR01189 126 aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                ++Ls Gq++R+a+ar ++ + ++ +LDEPt+alD e+ +++   l+  +++  ++++ th 
  MMETSP1061-20121228|336_1 682 RSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHR 742
                68*********************************************************96 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.0   1.4e-21     1e-19       6     220 ..     534     772 ..     530     779 .. 0.76

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 1.4e-21
  TIGR03522   6 sdlsklyg..kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylef...saal.....yklkgrklkkrveelielvGlka........eqhkkiga....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevike.iakdktvilsthimqeveal.cdrviiinkGkivadkkleelk 220
                ++++  y    + al  v  ++  G+ v ++G  G+Gks++++ +  +  ++sG ++++g d    +     +   + e +P    + + e + +   + ++       + + + + +v ++++l+Gl++        e   +ig+    ls G rqrv +a+a++ +P+vl+ldePt+ ld +   ++   +k+ + + k++++ th +  +++l  +rvi+++kGkiv + + e+l 
  MMETSP1061-20121228|336_1 534 NNVTLEYDamDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYgieKDDIdpetgDAVYNARWRTKVFDCLKLAGLTVtpgnelglELDTRIGEggrsLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMaMQQTKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLL 772
                5555555411356999999******************************************986655554444455667777777777666555511122231111123455668899*********986333333335667887555559********************************98887766666527889*************998679***********998877764 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.55        39      89     246 ..     201     361 ..     164     401 .. 0.60
   2 !   27.0   0.0   2.2e-09   1.5e-07    1218    1305 ..     531     619 ..     483     626 .. 0.89
   3 !   41.0   0.0   1.3e-13   9.4e-12     487     624 ..     606     761 ..     600     775 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.55
  TIGR01271  89 lylgevtkavqplllgriiasydaknaeereiay.ylalglsllfivrtlllhpaifglhhlgmqlrialfsliykktlklssrvldkistgqlvsllsnnlnkldeglalahfvwiap.lqvvl...lvgliwelleasafcglgflillalvqallgkkmm 246
                l lg    +v p   g+ i    +  a++ ++a   ++lg+s ++   +  ++ ++f +     +    +   +++ +l   +  +d  +tg l+s l +++nk+ + ++    v +    q v+    +  i   l++ +f g+ ++  l+ v   l++ ++
  MMETSP1061-20121228|336_1 201 LLLGAYMTSVVPSYWGKCIQCVATLTATKAQLAEaLIGLGVSSILAGLFTGIRGSLFWIGGC--RANYNIRVKLHRSLLLQEAAFFDTNETGYLLSRLNSDVNKIGQVISYHINVVLRQfAQFVFgsmYLFRISPRLSMYTFAGILLVAYLSAVYGDLARDLA 361
                44666666777777777777777766666666541345666665555555566666654432..222222233455556666777888888888888888888888777654444333213333310022234455666666666666556555555555554 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 2.2e-09
  TIGR01271 1218 mtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfils 1305
                 + ++++t  y    r  l  +   + +g+rv l+gr+gsgks++l ++lr+ + + g i++dg    s+t  +      ++ q   ++ 
  MMETSP1061-20121228|336_1  531 IAMNNVTLEYDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDpSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFP 619 
                 6789**********************************************987378************999998888888888776665 PP

  == domain 3    score: 41.0 bits;  conditional E-value: 1.3e-13
  TIGR01271 487 grisfspqvswimpgtikdniifglsydey...........rytsvikacqleediallaekd.....ktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehlkk..adkilllhegs 624
                  +s   q + ++p ++ +n+++g+  d+            r+++ +  c     +++ +  +     +t +gegg +lsggqr r+++ara+ ++ ++ lld p + ld  +ek++  s    +  +k+ ++vt +l  ++    +++++l +g+
  MMETSP1061-20121228|336_1 606 SHVSIVEQEPHVFPMSLMENVLYGIEKDDIdpetgdavynaRWRTKVFDCLKLAGLTVTPGNElglelDTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSleVNRVIVLDKGK 761
                568889999999999999999999988863222223323447777777888888888888765334347899*****************************************************************9988752267888888886 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.2   7.4e-21   5.3e-19       1     192 [.     548     761 ..     548     768 .. 0.75

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 7.4e-21
  TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkei...t..epgpdrmvvfqnysllpwltvrenialavdavlrd......lskserreiveehielvglreaa........dkrpeq....lsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeal.llsdrvvmltngp 192
                l +vd +i  g+ ++l+g sg gks++l  +  +  p+sg + l+g ++   t  e   +  +v q+  ++p ++  en+   +++   d      + ++  r+ v + ++l gl+ +         d r+++    lsgg +qrvaiara+   p++llldep  ald+ + +++   l k++ +++ +++mvth +     l  +rv++l +g 
  MMETSP1061-20121228|336_1 548 LSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLrslTrsETASHVSIVEQEPHVFP-MSLMENVLYGIEKDDIDpetgdaVYNARWRTKVFDCLKLAGLTVTPgnelglelDTRIGEggrsLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSL-KMAMQQTKSMVMVTHRLGVIRsLEVNRVIVLDKGK 761
                57899*****************************************87622232244556678899999999.578899998887654431111113344557889999****9987641111222244543333339*********************************999999887.55556667899****98865414468888888775 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.2     2e-20   1.4e-18      43     258 ..     551     777 ..     546     783 .. 0.80

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 2e-20
  TIGR03415  43 asldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlels........GvakaerrkrveeqlelvglaeWa........dkkvge....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklG.nriaimegGrivqlgtpeeivlkPan 258
                +  ++  G+ + l+G sGsGkss+lr++ ++   s G++++  +d+   +++ ++        ++vs+v q+  ++P +++ env +G+e +         v +a  r +v + l+l gl+           d+++ge    lsGG +qrv +ara+  e ++ll+deP +ald    +k+   l ++  +  k +v+v+h l     l  nr+ ++++G+iv  g pe+++++  +
  MMETSP1061-20121228|336_1 551 VDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELD-GDDLRSLTRSET-------ASHVSIVEQEPHVFP-MSLMENVLYGIEKDdidpetgdAVYNARWRTKVFDCLKLAGLTVTPgnelglelDTRIGEggrsLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSL-KMAMQQTKSMVMVTHRLGVIRSLEvNRVIVLDKGKIVEEGHPEDLLKNEGS 777
                56688999*******************************985.565556665554.......468************.5899********8622222211345678899**********985431111122245555455559*********************************999998875.66677789*********9876664399******************998665 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.7e-05    0.0027      23      84 ..     551     613 ..     530     628 .. 0.84
   2 !   48.8   0.1   1.5e-15     1e-13     135     225 ..     683     774 ..     669     779 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.7e-05
  TIGR01288  23 lsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararl.arakigvvpq 84 
                +   i +g+   l+g  g+gks++ r +l +  p+ g+i + g++  + +r  + +++ +v q
  MMETSP1061-20121228|336_1 551 VDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSeTASHVSIVEQ 613
                5567899************************************99999998724567888887 PP

  == domain 2    score: 48.8 bits;  conditional E-value: 1.5e-15
  TIGR01288 135 dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerl.cdrlcvleagrkiaegrpdalide 225
                +lsgg ++r+++ara+i +pq+l+ldept+ ld  + + +   l+  + + k++++ th +     l ++r+ vl++g+ + eg+p+ l+++
  MMETSP1061-20121228|336_1 683 SLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEEGHPEDLLKN 774
                69***********************************************************999887579*****************99875 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   8.5e-06   0.00061       2      62 ..     529     593 ..     528     620 .. 0.75
   2 !   46.2   0.2   1.2e-14   8.3e-13     132     221 ..     673     767 ..     668     777 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 8.5e-06
  TIGR02323   2 pllevselsksygskk..gcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyes 62 
                p++ +++++ +y +    +++ v+  +y G+ +++vG sGsGks++l ++     +++G ++ + 
  MMETSP1061-20121228|336_1 529 PVIAMNNVTLEYDAMDrpALSgVDTnIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDG 593
                566666666666554311444566669*************************99*****998765 PP

  == domain 2    score: 46.2 bits;  conditional E-value: 1.2e-14
  TIGR02323 132 idaari..kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvs.vqarllllrglvrelglaviivth.lavarll.aqrllvmkqGrvvesGl 221
                +d+ ri    +++sGG +qr+ iar+++ +p+++++ ept  l s  + +++   ++  +   ++++vth l+v+r l  +r++v+ +G++ve+G 
  MMETSP1061-20121228|336_1 673 LDT-RIgeGGRSLSGGQRQRVAIARAIIREPQVLLLdEPTAALDSeSEKKVVGSLKMAMQQTKSMVMVTHrLGVIRSLeVNRVIVLDKGKIVEEGH 767
                555.665556899*******************99999******661555666666677778899************77369************996 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.6e-09   1.2e-07       2     104 ..     531     631 ..     530     671 .. 0.85
   2 !   34.2   0.3     3e-11   2.1e-09     403     483 ..     683     764 ..     678     778 .. 0.93

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 1.6e-09
  TIGR02633   2 lemkgivkkfggvk..aldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGne 104
                + m++++ +++ +   al ++d ++ +G+ v+l G  G+Gks++++ +   y     +G i  +g++l++ + ++t    ++i+ qe  +   +s++en++ G e
  MMETSP1061-20121228|336_1 531 IAMNNVTLEYDAMDrpALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDP--SSGRIELDGDDLRSLTRSETA-SHVSIVEQEPHVF-PMSLMENVLYGIE 631
                67999999999775449*****************************99999965..57**********998877775.679******8755.69*******9977 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 3e-11
  TIGR02633 403 rlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGls.drvlvigeGklka 483
                +lsGG++q+  +a+ ++ +p+vl+ldept  +d  +  ++   +++ +q+  ++++v+  l  +  l  +rv+v+++Gk+  
  MMETSP1061-20121228|336_1 683 SLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLEvNRVIVLDKGKIVE 764
                79************************************************************99998549*********865 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       6.4   4.6e+02     106     151 ..     360     407 ..     353     413 .. 0.72
   2 !   15.6   0.0   1.4e-05   0.00098       4      63 ..     530     590 ..     527     645 .. 0.65
   3 !   37.9   0.0   2.4e-12   1.7e-10     161     221 ..     683     746 ..     674     769 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 6.4
  TIGR03719 106 isaklaeedadfdklleeqaklqekidaadawdlds.kleia.mdalr 151
                +++k+ +  ad ++++e   ++ e+i a d+ d++s k+e a   al 
  MMETSP1061-20121228|336_1 360 LAEKVQDTFADATAVAETSFTMSETIRAFDGVDIESdKFEEAqFSALE 407
                55666667788899999999999******9999986345544145555 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.4e-05
  TIGR03719   4 iytmkrvskvvpp.kkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGeal 63 
                +  m++v+  +++ ++  l  +  + ++g ++ ++G  G+Gks++l+ m       +G + 
  MMETSP1061-20121228|336_1 530 VIAMNNVTLEYDAmDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIE 590
                5678888877776578888889999999999999999999999999988766555555433 PP

  == domain 3    score: 37.9 bits;  conditional E-value: 2.4e-12
  TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaes....vaWlekflkeykGtvvavthdryfl 221
                +lsGG+++rva++r ++ +P++llldePt  ld+es    v  l+  ++  + ++v+vth    +
  MMETSP1061-20121228|336_1 683 SLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESekkvVGSLKMAMQ-QTKSMVMVTHRLGVI 746
                79*********************************93332334444444.455788899965554 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   2.2e-17   1.6e-15      61     294 ..     532     767 ..     507     773 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 2.2e-17
  TIGR00956  61 ilrklkkekeskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeikkhyrgdvvYsaetdvHlpsltvketLdfaarlktpq.nRvkgvsreeyakkladvvlaiyGLshtk........ntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGk 294
                ++++++ e +   +  l+ vd+ i +g+ v ++Gr gsG+s++L+++     +f    +++i+ dg +   +++  ++  v + e++ H+  ++  e + + ++    + +  + v +  +++k+ d  l+  GL+ t         +t++G+   R +sGG+r+Rv+ia +++ +++++++D+ t  LDs    ++v +lk+  + +k+ ++v+         e+ ++v+vl++Gk++  G+
  MMETSP1061-20121228|336_1 532 AMNNVTLEYDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTML----RFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVFPMSLMENVLYGIEKDDIDpETGDAVYNARWRTKVFDC-LKLAGLTVTPgnelglelDTRIGEG-GRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLEV-NRVIVLDKGKIVEEGH 767
                5566677777888889999**************************973....45555899**********************************9999999988777652556888888888887775.5677888776111111115556544.599*********************************************************99998888886.9*********997765 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.4   2.9e-10   2.1e-08      79     427 ..     260     618 ..     218     626 .. 0.61
   2 !   16.1   0.0   9.8e-06   0.00071     451     550 ..     669     765 ..     664     768 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 2.9e-10
  TIGR01194  79 vsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdt.llilttllvelavtlfglaylaylsvvvflltvvlivlGvaayllarsrGlkftykvrdeedelnk.yttalvsGlkelklnrirrlsfarsais.....esavrvadlniieilifilaktvGslllsllvGllltlaayfavidakai.....sasvlvllyikGplvqlvsilpilararvaftrlaelser...isepep.......elelseaenv...llldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylf 427
                 + r   ++r++l + +l       +   +  ll+ l sd++++ ++ ++ +  +l + a ++fg  yl  +s  + + t + i+l   ayl a  +       +rd+ +++++ +  a ++    + +     + f    i+     e+     +l+ ++  +   ++++ s +l  ++ ++++  a +av  a  +     +++++   ++    + +      + +a  a   + el  r   i++p p        l +s ae     + l  +k    + +++v ++y +++     al  +d +i sG+ v +vG  G Gks++++ +l +y p +G++ ldG+ + + +r +     s v  + ++f
  MMETSP1061-20121228|336_1 260 GGCRANYNIRVKLHRSLLLQEAAFFDTNETGYLLSRLNSDVNKIGQViSYHINVVLRQFAQFVFGSMYLFRISPRLSMYTFAGILLV--AYLSAVYGD-----LARDLAEKVQDtFADATAVAETSFTMSET-IRAFDGVDIEsdkfeEAQFSALELEEVQ-AWAYGTHKFMSDTLQSVLQVAML-VACWAVGRAGGLpaadlTTFMFYTGFVLESSNEVGDQWAKIQQAVGASSSVFELITRvpaIKDPSPgdangagALTTSAAEATpqtIGLTTEKP--VIAMNNVTLEYDAMD---RPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLRSLTRSETASHVSIVEQEPHVF 618
                466777788888888888888888889999999999999999997642677778888888888888888888888877777776653..233333333.....35555555554133444444444444444.3444444443000003333333333332.23344455555556555555544.3567776655541000044444444444455566667777778877888888887762225667763222222244555553211133334443..366677777776665...5689************************************************9999999888888777776666 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 9.8e-06
  TIGR01194 451 leledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfel..adrlikladGkvvke 550
                l+le   ++ +++ s    ls Gqr+r+a+  a + e  vlllde +a  d    +     l     ++ k++++++h     +    +r+i l +Gk+v+e
  MMETSP1061-20121228|336_1 669 LGLELDTRIGEGGRS----LSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMA-MQQTKSMVMVTHRLGVIRSleVNRVIVLDKGKIVEE 765
                666666667777777....***************************9999998887777776655.5689********876654312589*********987 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   8.8e-07   6.3e-05      12      92 ..     544     627 ..     532     646 .. 0.82
   2 !   29.6   0.1   1.6e-09   1.1e-07     124     205 ..     683     765 ..     670     776 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 8.8e-07
  TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldg...rewtrkdlkkiGsliesPalyenltarenlk 92 
                ++ +++ v+ ++ + +  +l+G  G+Gks++l+ +  +  ++sG+i ldg   r++tr++  +  s++e+ +    ++  en+ 
  MMETSP1061-20121228|336_1 544 DRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGddlRSLTRSETASHVSIVEQEPHVFPMSLMENVL 627
                466788899999999999*******************************94444679999999999999887777777777765 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 1.6e-09
  TIGR03740 124 qfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevell.adhiGiiseGklkye 205
                 +s G +qr+ ia a++++P++l+ldePt  ld    +++   +k   ++  ++++ +h l  ++ l ++ + ++ +Gk+  e
  MMETSP1061-20121228|336_1 683 SLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLeVNRVIVLDKGKIVEE 765
                578899*****************************9999999999999**************999874577878888888655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   3.7e-13   2.6e-11     927    1149 ..     529     774 ..     522     797 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 3.7e-13
  TIGR01257  927 pgvcvknlvkifepsgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdi......et..nldavrqs...lgmcpqhnilfhhlt..v...aehilfyaqlkgrsweeaqlemeaml..edtglh..hkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsi.wdlllkyrsgrtiimsthhmdead.llgdriaiisqgrlycsgtpl.flkn 1149
                 p ++++n+   ++ + rpa+  ++  +y  +  a++g  g+gk++ l  +  +  p+sg + + g d+      et   + +v q    + m    n+l+      +   +   ++ a+ + + ++  +l   ++   ++ gl    +  e  + lsgg ++++++a a++ + +v++ldept+ +d  s + +   l +  +  ++++m th +     l  +r+ ++ +g++   g p  +lkn
  MMETSP1061-20121228|336_1  529 PVIAMNNVTLEYDAMDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYDPSSGRIELDGDDLrsltrsETasHVSIVEQEphvFPMSLMENVLYGIEKddIdpeTGDAVYNARWRTKVFDCLKLAGLTVTpgNELGLEldTRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVvGSLKMAMQQTKSMVMVTHRLGVIRsLEVNRVIVLDKGKIVEEGHPEdLLKN 774 
                 667788888889*****************************************************9983333333322456777762224556678999853321121114567899999999999988876555422556664215667999***********************************998765157889999************987515679***********99999624555 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0     1e-12   7.6e-11     470     642 ..     549     745 ..     483     753 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 1e-12
  TIGR00954 470 eeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfker....glsdkdLeqiLeevkLedlleregg.....wd.avqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelak...evgitllsvshrksL 642
                + +  ++ sG  + ++G  G GKss+ R++  ++ P  g           l   ++ +++  v q P +   +l + ++Y   ++d+        ++ +  +++ + +kL  l    g      +d  + +    LsgG++qR+a+AR +   P+  +LDE t+A+  + E+k+   +k   +   +++ v+hr  +
  MMETSP1061-20121228|336_1 549 SGVDTNIYSGDRVALVGRSGSGKSSMLRTMLRFYdPSSGrieldgddlrSLTRSETASHVSIVEQEPHVFPMSLMENVLYGIEKDDIDPEtgdaVYNARWRTKVFDCLKLAGLTVTPGNelgleLDtRIGEGGRSLSGGQRQRVAIARAIIREPQVLLLDEPTAALDSESEKKVVGSLKmamQQTKSMVMVTHRLGV 745
                44556788*********************999985667799***998855555566788999**********************99987655533444455678888888877654333444553325889999***************************************986665211456678888888665 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.022       1.6     618     654 ..     543     579 ..     520     615 .. 0.81
   2 !   28.1   0.2   1.7e-09   1.2e-07     815     921 ..     669     769 ..     666     772 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.022
  TIGR00630 618 akennlkdidvsiplglltvitGvsgsGkstLindiL 654
                  +  l  +d +i  g  +++ G sgsGks+++  +L
  MMETSP1061-20121228|336_1 543 MDRPALSGVDTNIYSGDRVALVGRSGSGKSSMLRTML 579
                5556788889999999999999999999999998877 PP

  == domain 2    score: 28.1 bits;  conditional E-value: 1.7e-09
  TIGR00630 815 vGLgY.iklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDy..iidlGPeGGekGGkvvasgtPe 921
                +GL+   ++G+   +LsGG  qrv +a+ + ++     + +lDePt+ L  +  kk++  l+  +++ +++v++ h l vi+s +   +i l        Gk+v +g Pe
  MMETSP1061-20121228|336_1 669 LGLELdTRIGEGGRSLSGGQRQRVAIARAIIRE---PQVLLLDEPTAALDSESEKKVVGSLKMAMQQTKSMVMVTHRLGVIRSLEVnrVIVL------DKGKIVEEGHPE 769
                566543689*******************99875...5689*****************************************97543114433......335555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        79  (0.0192589); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 1.68u 0.26s 00:00:01.94 Elapsed: 00:00:01.23
# Mc/sec: 864.90
//
Query:       MMETSP1061-20121228|337_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.8    4.9   8.3        4.1    4.7   5.7    1.1  1  TIGR00584 mug: mismatch-specific thymine-DNA glycosylate (mug)


Domain annotation for each model (and alignments):
>> TIGR00584  mug: mismatch-specific thymine-DNA glycosylate (mug)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.7     0.001       4.1      42      91 ..      29      78 ..      19      98 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.001
  TIGR00584 42 evlakaktqefseelekfrkrkarsaeekrkvevkkpsdskksaketktk 91
                ++ ka+t +++++l+k++  k  ++ + +  +  k+ +s k+ k+tk+ 
  MMETSP1061-20121228|337_1 29 LMPTKAPTGSPTKSLKKGKSTKVPTKAPTKSPKKTKSPKSTKAPKSTKAP 78
               57899***************999999999888888888888888888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 622.23
//
Query:       MMETSP1061-20121228|341_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1263.32
//
Query:       MMETSP1061-20121228|343_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   12.1   0.0      0.071   11.0   0.0    1.5  2  TIGR00489 aEF-1_beta: translation elongation factor aEF-1 beta


Domain annotation for each model (and alignments):
>> TIGR00489  aEF-1_beta: translation elongation factor aEF-1 beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.7e-05     0.071      46      84 ..      38      76 ..      23      79 .. 0.89
   2 ?   -3.1   0.0      0.43   1.8e+03      29      32 ..     110     113 ..     100     128 .. 0.53

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.7e-05
  TIGR00489 46 fGLkaivvvvvvedaeGgteaieeelaeiegvesveved 84
                GLk i  +++ e +eG  + i  +l++ ++ +sv   d
  MMETSP1061-20121228|343_1 38 RGLKTIPSMAEDESREGAQDYILSDLSGYDDDSSVASID 76
               59****************************999997665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.43
  TIGR00489  29 vlee 32 
                v++e
  MMETSP1061-20121228|343_1 110 VQKE 113
                2222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 650.84
//
Query:       MMETSP1061-20121228|345_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 653.00
//
Query:       MMETSP1061-20121228|346_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|348_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-17   59.9   0.9    5.8e-17   59.8   0.6    1.1  1  TIGR01933 hflK: HflK protein


Domain annotation for each model (and alignments):
>> TIGR01933  hflK: HflK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.6   1.4e-20   5.8e-17       3     189 ..      10     195 ..       8     257 .. 0.89

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 1.4e-20
  TIGR01933   3 iikeaergvvlrfGkysrvlepGlnlkipfieevykvnvekvrelakeglmltkDenivevelnvqYkisd..pakylfkvenaedslrqatdsalreviGdssldeiltegRsairedtkeelneildsydlGitvvdvnlqsarpPeevkeAFddviaAredeerlineaeayanevvPkarGeAqr 189
                 +  +e gvv  +G+++++l+pGl++    +++v+     ++++l    +  tkD+  v+v + vqY++     ++  ++ +++ + ++     ++r+ + +++ld+ + + + ++ e++ ++l  +++ y  G ++ +  + +  p ++vk+  ++++a r  +e + ++aea + ++v  a+ eA+ 
  MMETSP1061-20121228|348_1  10 CVRTQEVGVVEDLGQFKQLLQPGLHCICWPLQSVVGRMSLRIQQLDVICETKTKDNVFVQVGVAVQYRVLVdgAYDAYYRLTDPRNQIQSYVFDVVRSTVPRMDLDDAFMS-KDEVGEAVLTQLRDVMKDY--GYEIKKTLVTDLSPDNRVKASMNEINASRRLKEAASHKAEADKVKQVKAAEAEAEA 195
                58899***************************************************************8640155668*****************************9998.899**************99..6677777888999999*************************999999988888864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1274.38
//
Query:       MMETSP1061-20121228|357_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 486.28
//
Query:       MMETSP1061-20121228|360_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|352_1  [L=1552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.4e-244  809.2   2.6   7.1e-101  336.4   0.0    4.1  4  TIGR00958 3a01208: antigen peptide transporter 2
   2.5e-216  717.6   9.4    1.3e-99  332.3   0.0    4.0  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
   8.1e-197  653.0   6.9    1.2e-91  305.8   0.1    4.0  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   3.5e-175  582.0   8.7    2.2e-86  288.5   0.1    4.0  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
   3.8e-154  512.6   8.7    8.3e-80  266.9   0.0    4.0  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   9.9e-154  511.1   6.3    1.7e-70  235.9   0.1    4.0  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   6.7e-141  468.6   4.2    5.4e-74  247.6   0.0    3.3  3  TIGR01192 chvA: glucan exporter ATP-binding protein
   1.3e-136  454.5   6.1    7.6e-69  230.5   0.1    4.9  5  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
   4.2e-131  436.3   1.4    1.4e-67  226.6   0.0    3.3  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
   4.5e-125  416.6   1.0    1.5e-58  196.8   0.0    4.0  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
   1.2e-111  371.8   1.0    3.8e-60  201.8   0.0    2.6  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
   2.1e-107  357.8   1.6      7e-57  191.1   0.0    3.2  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    7.1e-78  259.2   0.1    2.5e-41  139.5   0.0    2.3  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      2e-77  258.7   3.5    5.4e-41  137.9   0.0    3.1  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.6e-75  251.6   1.8    2.4e-37  126.7   0.2    2.2  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    9.2e-67  222.8   0.1      4e-33  112.6   0.0    2.3  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.8e-65  218.6   0.1    2.2e-32  110.3   0.0    2.2  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    2.3e-65  218.2   0.3    7.4e-33  111.8   0.0    3.1  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.6e-63  211.4   0.1    3.5e-31  106.5   0.0    2.3  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.3e-62  208.8   0.0    4.3e-32  109.1   0.0    2.4  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.4e-62  209.0   0.1    7.7e-32  108.7   0.0    2.2  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    5.7e-62  207.0   0.1    6.6e-31  105.4   0.0    2.2  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.5e-60  203.1   0.3      1e-31  108.3   0.0    2.2  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.8e-60  201.9   0.1    1.9e-29  100.6   0.0    2.2  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    4.2e-60  200.9   0.0    1.8e-29  100.8   0.0    2.3  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.6e-59  199.5   2.8    1.1e-29  101.6   0.1    2.4  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.9e-59  198.7   0.0    1.7e-30  104.0   0.0    2.4  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    5.1e-59  197.9   0.1    9.8e-30  101.6   0.0    2.2  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    6.2e-58  193.7   0.0    1.6e-28   97.6   0.0    2.5  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    6.6e-58  193.8   0.1    5.8e-28   95.9   0.0    2.6  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    5.4e-57  190.7   0.1    2.5e-28   96.9   0.0    2.3  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    4.5e-56  187.7   0.5    2.4e-28   96.8   0.0    3.4  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    5.4e-56  187.9   0.1    5.6e-28   95.7   0.0    2.2  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    6.2e-54  180.8   0.0    1.9e-28   97.2   0.0    2.3  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.4e-51  171.7   0.1    9.4e-26   88.3   0.0    2.5  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.2e-50  170.1   0.2    9.7e-27   91.9   0.0    2.3  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    4.1e-48  161.6   0.2    1.7e-24   84.3   0.0    2.4  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.9e-47  159.0   0.0    7.4e-26   88.7   0.0    2.3  2  TIGR00955 3a01204: pigment precursor permease
    1.8e-45  153.1   0.2    9.9e-22   75.4   0.0    2.4  2  TIGR01978 sufC: FeS assembly ATPase SufC
    7.1e-44  147.5   1.1    1.9e-21   73.2   0.0    3.3  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      5e-43  145.2   0.1    4.9e-21   73.3   0.0    3.1  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.8e-41  139.3   0.0    2.1e-19   67.7   0.0    2.9  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.1e-41  139.5   1.1    1.6e-19   68.3   0.1    3.2  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    3.7e-39  132.5   0.9    3.4e-19   66.6   0.1    3.1  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    8.8e-39  131.1   0.0    1.5e-19   68.3   0.0    2.6  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.6e-38  130.0   0.1    1.5e-19   68.4   0.0    2.3  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    3.1e-38  129.3   0.1    3.7e-19   66.7   0.0    2.6  2  TIGR01288 nodI: nodulation ABC transporter NodI
    4.8e-38  128.9   0.2    2.5e-18   64.0   0.0    2.3  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    9.7e-37  124.7   0.8    8.8e-18   62.6   0.0    3.1  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.2e-36  123.2   0.3    6.8e-19   65.5   0.0    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.2e-35  120.1   1.2    5.4e-17   59.4   0.0    3.3  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    6.5e-31  105.3   0.1    3.9e-10   36.8   0.0    4.2  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    6.4e-30  102.0   0.0    1.8e-14   51.0   0.0    2.9  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    3.7e-29   99.7   0.0      2e-14   51.5   0.0    3.0  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.1e-26   90.6   0.1    7.9e-13   44.7   0.0    2.7  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    8.4e-25   83.7   0.1    7.8e-14   47.3   0.0    2.0  2  TIGR01257 rim_protein: rim ABC transporter
    2.1e-15   53.8   1.5    6.5e-07   25.7   0.1    3.9  4  TIGR00630 uvra: excinuclease ABC subunit A
    0.00012   19.6   0.0      0.024   12.1   0.0    2.8  2  TIGR00455 apsK: adenylylsulfate kinase
    0.00019   19.0   0.0      0.096   10.2   0.0    2.7  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
    0.00025   17.5   0.3       0.16    8.2   0.0    2.3  2  TIGR00602 rad24: checkpoint protein rad24
     0.0019   15.7   0.0       0.96    6.9   0.0    2.4  2  TIGR03263 guanyl_kin: guanylate kinase
     0.0042   14.8   0.0       0.92    7.1   0.0    2.5  2  TIGR00152 TIGR00152: dephospho-CoA kinase


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.1   4.4e-23   2.9e-21     132     413 ..     213     499 ..     195     504 .. 0.84
   2 !  336.4   0.0  1.1e-102  7.1e-101     466     711 .]     604     855 ..     598     855 .. 0.97
   3 !  321.0   0.0   4.9e-98   3.2e-96     476     711 .]     900    1140 ..     888    1140 .. 0.96
   4 !   75.5   0.0     9e-24   5.9e-22     190     465 ..    1266    1542 ..    1249    1550 .. 0.84

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 4.4e-23
  TIGR00958 132 gasekeaeeeqsetad...lllrLLkllkrdlkll..llalvllvlsvlgevliPkytgrvidtllqdksvealakaiflltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllil..vlvLayGgqlvleg 413
                g+s    e+e+++ +d   +++ +L+++k     +  +++l   v+s l++ +i  + +   +   + ++ + + +  ++l+ l +  + + +++   +e a ++++  ++++ f +llrQd++++d   t  +   +s    +  + l  ++ + ++  + ++g+l+f ++ S +L++++l  +P++ +++  + k  q+ + +  e+ aka+ ++   +s++rT+ S  a e  + +f+e+ +e   l  + +++y+    + +l++ +++  + +  yG++l+ +g
  MMETSP1061-20121228|352_1 213 GDSASDDETEEKKVEDplaTVMEVLSFAKTRRAKFnlAMGLAASVMSGLIQPAIAIVFSDSFTNFSNGSDQNGIRNLALILCGLGFYAFATMAMQSTFLETAASEMTDTMKQEWFDALLRQDMAYYDIMDTSGTATIISTNGRKFKRGLGRKLGDGVQFTITAIGGLAFGFWCSLKLSFLLLAIVPVMAVVTGLVLKLNQTKTARANESYAKAGSIVYSSVSSIRTILSLNAVEDVIAKFEEATKEA-YLGATGQVVYIGAA-NGSLMAVFLFayLPLTLYGSYLMYKG 499
                4454445556666666677899999999876665500555566677777777787777777888888888999999999*******************************************************************************************************************************************************************98775.57777777777654.45555555441133456777777665 PP

  == domain 2    score: 336.4 bits;  conditional E-value: 1.1e-102
  TIGR00958 466 lsgtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe......sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykqlv 711
                ++  ++pk + G +eF+dVsF YP+r ++ v ++L++++++G++val GPsG+GKSt++ lle++Y+Pt G++llDg +lk+++ k+l+++++lV qEP lf+ s+ +Ni  G  +++++ev  aa++anahdFi+ +++gy+t vg++GsqlsgGqkqri iARAL+ kPr+++LDeAtSALD+e+e ++qe       + + +rtv+++ahrLst+++ad i+vl+ g++ve+G+hk+L +++++y+ lv
  MMETSP1061-20121228|352_1 604 SPSGMKPKAVVGDIEFKDVSFRYPTRTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEaldkliREDEDNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELISRHGAYYDLV 855
                566789***********************************************************************************************************************************************************************************99999999877775567789********************************************997 PP

  == domain 3    score: 321.0 bits;  conditional E-value: 4.9e-98
  TIGR00958  476 eGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgek.GsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykqlv 711 
                 e  ++F dV+F YPsrp+++++++L + ++ Ge+ a+VGPsG+GKStv+ l+e++Y+P+ G++   g+p+++++  +l++++ lV+qEPvlf  s+r+Ni +Gl+++++e++  +ak+an+hdFi+e+++ ydt vg +  sq+sgGqkqriAiARAL+r+P +L+LDeAtSALD+e+e+++q+      s+k rt++ iahrLst++++d+i+vl++g+v+e Gth++Lm+ ++ y++lv
  MMETSP1061-20121228|352_1  900 EDLITFCDVNFKYPSRPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAaTSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDaldnITSNKHRTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELMALKGHYHRLV 1140
                 5689*************************************************************************************************************************************86268**********************************9999888776668999*********************************************9997 PP

  == domain 4    score: 75.5 bits;  conditional E-value: 9e-24
  TIGR00958  190 tllqdksvealakaiflltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvleg.kv..ssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPqle 465 
                  + +d   ++++ + + ++l+ +a  + ++l    f  a++r+n+r+r   fk+l+rQ++++fd+  +  +tS ls+D++++ +   + +  l+ nl  +l++l++ +   +  +lv l  lP++ + + +   +y     ++ e    ++ ++ E ls +rTV S + E+  ++++ e+l++      k + a+ + + +  l+++l++ l+ + Gg l+ +  k+  s+g L+s     ++l+  +    +  ++  ka  a+e+ F +++Rk +++
  MMETSP1061-20121228|352_1 1266 SVRNDMRKQSFQISYIYIGLM-VAALVGNTLVFYGFGTATERMNKRVRDASFKNLMRQEVAYFDTRAVSAITSQLSDDAAMIHSFSGEPIRTLVMNLASVLVGLVVSFVYMWPFALVALGVLPFMAFGAEAEQRMYMGEDMDTGEDEKSSGVIVIESLSNIRTVASLSLEDVRSEQYAEALHKEEPTPFKSNCAKGAWIGIGPLCQQLSFALLFWWGGWLIGKFpKLysSRGFLISMFSLLFSLSG-MAAAAQGATDRGKALAAAERTFALTERKSEID 1542
                 566667777777776666655.4445555555555999**********************************************99**************************************************************************************************************************************97632332255666664322222222.22233344566688888888888888887776 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   1.6     7e-13   4.6e-11       6     239 ..     230     468 ..     225     499 .. 0.79
   2 !  332.3   0.0  1.9e-101   1.3e-99     329     575 ..     608     858 ..     589     859 .. 0.95
   3 !  309.7   0.0   1.3e-94   8.7e-93     335     575 ..     900    1143 ..     875    1144 .. 0.95
   4 !   37.4   0.0   3.9e-12   2.6e-10      63     322 ..    1281    1542 ..    1260    1549 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 7e-13
  TIGR02204   6 LaallpfvkryrarvlaalvaLviaaavtLs.lplavrklideGfskeesellneafalllvvvlvl...alat.alrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrik 239
                La++++ ++  ++r +   +a+ +aa+v+   +  a+  +  + f++ +++  ++ +  l ++   l   a+at a++  ++ +    +   ++++ f+ ll+ + a++d + ++   + ++++    k  +G  l   ++ ++++iG+la  +  s kl+ l+l++vP++ +   l+ +  ++++ ++ ++ a+a++ +  +++ i+t+ + +  e   ++f++a+ +ay  a+ ++ 
  MMETSP1061-20121228|352_1 230 LATVMEVLSFAKTRRAKFNLAMGLAASVMSGlIQPAIAIVFSDSFTNFSNGSDQNGIRNLALILCGLgfyAFATmAMQSTFLETAASEMTDTMKQEWFDALLRQDMAYYDIMDTSGTATIISTNGRKFKRGLGRKLGDGVQFTITAIGGLAFGFWCSLKLSFLLLAIVPVMAVVTGLVLKLNQTKTARANESYAKAGSIVYSSVSSIRTILSLNAVEDVIAKFEEATKEAYLGATGQVV 468
                666666666666666666666666555554404557777777777776666555555555555554411144441445556666666677778999**************************************************************************999988899999999999****************************************99988776654 PP

  == domain 2    score: 332.3 bits;  conditional E-value: 1.9e-101
  TIGR02204 329 alpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkg....rttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlarLq 575
                  p+ v g+ief++v+f+yP+r++  + +gl+l++++G tval GPsG Gkst+++ll rfydP+ G+illdG+dl++l+ + lr+++ lv+q+++lfa s+ +ni+ Grpda+++eve+aa++a+a++fi ++p+Gy+t++G++g +LsGGqkqri+iara++++ +i+LLdeatsaLd+ese  vq+al++l+++    rt +v+ahrL+t+++ad i+vl  G ive+G+h+eLi + g y  l++ q
  MMETSP1061-20121228|352_1 608 MKPKAVVGDIEFKDVSFRYPTRTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdednRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELISRHGAYYDLVQAQ 858
                4588999*******************************************************************************************************************************************************************************************86333339******************************************9999876 PP

  == domain 3    score: 309.7 bits;  conditional E-value: 1.3e-94
  TIGR02204  335 rgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergv.tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelm..kgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlarLq 575 
                 +  i+f +v+f+yP+rp+q+ ++gl++ v++Get+a+vGPsG Gkst+++l+ +fy P +G+i   Gv++++l+ + lr+r++lv+q+++lf  s+++nir+G  da++e++e+ ak+a+ ++fi ++p+ ydt +G  +  ++sGGqkqriaiara+l+d  +LLLdeatsaLd+ese+ vq al+++   k+rt + iahrL+t++++dri+vl++G++ e+Gth+eL+a  g y+rl++Lq
  MMETSP1061-20121228|352_1  900 EDLITFCDVNFKYPSRPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAATsQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITsnKHRTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELMALKGHYHRLVHLQ 1143
                 45699************************************************************************************************************************************9875279*******************************************987225789999********************************************9 PP

  == domain 4    score: 37.4 bits;  conditional E-value: 3.9e-12
  TIGR02204   63 lllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvla.gkl..saGeL.aqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdik 322 
                 + + +++   ++ +l fy   +  er+   +r a f++l++ + a+fd+   + + s+l+ d+++++s  G  +   + nl  ++ +l++ ++    ++++ l ++P++ +   +  r       ++ +    ++  + e+l++i+tv + + e+  ++++++a+ k   +  k+  a+   i +  +    + +l+ W G+  + +  kl  s G L + f l  +++ ++++a ++   +  +a  aaer + l + ks+i+
  MMETSP1061-20121228|352_1 1281 IYIGLMVAALVGNTLVFYGFGTATERMNKRVRDASFKNLMRQEVAYFDTRAVSAITSQLSDDAAMIHSFSGEPIRTLVMNLASVLVGLVVSFVYMWPFALVALGVLPFMAFGAEAEQRMYMGEDMDTGEDEKSSGVIVIESLSNIRTVASLSLEDVRSEQYAEALHKEEPTPFKSNCAKGAWIGIGPLCQQLSFALLFWWGGWLIGKfPKLysSRGFLiSMFSL--LFSLSGMAAAAQGATDRGKALAAAERTFALTERKSEID 1542
                 2334445555789999********************************************************9988888888877777777777777777777777777777766666666555555555566778899**************************99988887777666666666666666678999999999885423442144444133333..34445566667778899999999999999999999986 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.5   2.5e-09   1.6e-07      15     227 ..     248     459 ..     233     491 .. 0.84
   2 !  305.8   0.1   1.8e-93   1.2e-91     324     569 ..     609     858 ..     575     861 .. 0.94
   3 !  279.8   0.0   1.3e-85   8.8e-84     331     569 ..     902    1143 ..     893    1146 .. 0.95
   4 !   40.1   0.0   5.4e-13   3.6e-11      54     319 ..    1275    1542 ..    1248    1550 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 2.5e-09
  TIGR02203  15 llvlalvalvlvaatesllaallkplldegfselekeevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrl 227
                +l + l a v+    ++ +a ++ +   + +++ ++++ +  + l++ gl      +  + + +l  ++ ++  +++++ f+ ll+   ay+d  +++   + + ++  +  + +   l   v+ t+t ig l++ ++ s +l++++++++Pv+a+++  v k  +  +    +s +++ ++v  +++  r + + ++ e    +f++++++ 
  MMETSP1061-20121228|352_1 248 NLAMGLAASVMSGLIQPAIAIVFSDSFTNFSNG-SDQNGIRNLALILCGLGFYAFATMAMQSTFLETAASEMTDTMKQEWFDALLRQDMAYYDIMDTSGTATIISTNGRKFKRGLGRKLGDGVQFTITAIGGLAFGFWCSLKLSFLLLAIVPVMAVVTGLVLKLNQTKTARANESYAKAGSIVYSSVSSIRTILSLNAVEDVIAKFEEATKEA 459
                344444455555566777777776666665555.999*************9999999999999******************************9999999999999999999999999999*****************************************9999999999****************************9999999988765 PP

  == domain 2    score: 305.8 bits;  conditional E-value: 1.8e-93
  TIGR02203 324 alervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk....gRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLhkiq 569
                +++ v G++ef++v+fryp + ++++ ++++lk++aG++val G+sG Gkst+++ll RFy+p+ G+illDg+dl+dl+++ LR+q+ lvsq+  LF  +ia+n++ g+  +++++eveea+++a+++d++ + p+G +t vG++gs+LsGGq+qR++iaRal+    i++LDeatsaLD+ese  vq+aL++l++    +Rt +v+ahRLsti++aD i vl  G ive+G h+eL++r+G Y  L + q
  MMETSP1061-20121228|352_1 609 KPKAVVGDIEFKDVSFRYPTRtEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGRP-DATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIRededNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELISRHGAYYDLVQAQ 858
                456799************985389*************************************************************************************9.999********************************************************************************8644447*******************************************9998766 PP

  == domain 3    score: 279.8 bits;  conditional E-value: 1.3e-85
  TIGR02203  331 kvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGeng.skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkg..RttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLhkiq 569 
                  + f +v+f+yp++ ++++++++++ v++Ge++a+vG+sG Gkst+++l+  Fy pd+G i   gv++ dl++a LR++++lv+q+ vLFd +i +n+++g + +++++++e+++++a+ +d++ + p+  dt vG+ + s++sGGq+qR+aiaRall+d  +L+LDeatsaLD+eseR vq+aL+++  +  Rt + iahRLsti+++Dri+vl++Gk+ e+Gth eL+a +G+Y +L ++q
  MMETSP1061-20121228|352_1  902 LITFCDVNFKYPSRpEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLE-DATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAAtSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNkhRTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELMALKGHYHRLVHLQ 1143
                 68999*******98467889*********************************************************************************87.9*******************************976379*********************************************98553389999*****************************************9988 PP

  == domain 4    score: 40.1 bits;  conditional E-value: 5.4e-13
  TIGR02203   54 llavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikpl...ksLtnvsaklqkglaaaesvfallDsppekd 319 
                  + +  + +gl+v   +++ +  y ++ +++++ + +R + f++l++   ayfd + ++ + s+l  d+ ++ s + + + +lv + ++v+  l+v + + W ++l+ + +lP +a+ +++ ++ +     ++ +       +v e+l++ r v +   +++ ++ ++++ ++   +  k++ a+++   +  l+ ++++a+++    +   +      +  +f+++m  l+ +l      ++ ++   k laaae+ fal ++++e d
  MMETSP1061-20121228|352_1 1275 SFQISYIYIGLMVAALVGNTLVFYGFGTATERMNKRVRDASFKNLMRQEVAYFDTRAVSAITSQLSDDAAMIHSFSGEPIRTLVMNLASVLVGLVVSFVYMWPFALVALGVLPFMAFGAEAEQRMYMGEDMDTGEDEKSSGVIVIESLSNIRTVASLSLEDVRSEQYAEALHKEEPTPFKSNCAKGAWIGIGPLCQQLSFALLFWWGGWLIGKFP-KLYSSRGFLISMFSLLFSLsgmAAAAQGATDRGKALAAAERTFALTERKSEID 1542
                 5566778899*******************************************************************************999999999999**************************9999999999999999*************************************************************99998876543.23333445555555544440004555555566789*********999999987 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.5    0.0041      0.27     198     361 ..     306     471 ..     265     500 .. 0.72
   2 !  288.5   0.1   3.4e-88   2.2e-86     445     693 ..     606     859 ..     583     860 .. 0.94
   3 !  260.7   0.0   8.2e-80   5.5e-78     448     693 ..     895    1144 ..     878    1145 .. 0.93
   4 !   28.0   0.0   2.1e-09   1.4e-07     195     386 ..    1292    1484 ..    1275    1501 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0041
  TIGR01846 198 lrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvreleqirefltgsaltvvldllfvvvf...lavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietika.savepqfkrrWerqlaayvaasfkvtklg 361
                ++++ +  ++s +   +    +  ll   ++y++   +  t + +    + r+f  g    +   + f+++    la  f+ s kl +++l  +++ +++   v  + +++ +   e+ a+a s++  sv++i+ti +  ave+ + +  e    ay+ a+ +v  +g
  MMETSP1061-20121228|352_1 306 MQSTFLETAASEMTDTMKQEWFDALLRQDMAYYDIMDTSGTATIIS--TNGRKFKRGLGRKLGDGVQFTITAiggLAFGFWCSLKLSFLLLAIVPVMAVVTGLVLKLNQTKTARANESYAKAGSIVYSSVSSIRTILSlNAVEDVIAKFEEATKEAYLGATGQVVYIG 471
                5555555555555556666666666666666666666655555544..34556655554444444555555411256779*******************************************************976267777776666666666776666665555 PP

  == domain 2    score: 288.5 bits;  conditional E-value: 3.4e-88
  TIGR01846 445 gkaalpelkGaiefenirfryked.spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick....grtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqqqs 693
                + +    + G+ief+++ fry    + +v + l+l+ikaG+++ + GpsG Gkst+ +ll r+y P  G +l+dg+dl  ++ +wlr+q+g+v qe  lf  si+dni+ ++P++  ++v +aa+ a ahdfi++ ++Gy+t vg++G++lsGGq+qri++aral+a+Pri++ldeatsald ese ++++ l+++ +    +rtv+++ahrlst+++ad i vl  G ive Gkh+el++++g y +l q q 
  MMETSP1061-20121228|352_1 606 SGMKPKAVVGDIEFKDVSFRYPTRtEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIRededNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELISRHGAYYDLVQAQK 859
                445555678************7651568999******************************************************************************************************************************************************************9998645558***********************************************9996 PP

  == domain 3    score: 260.7 bits;  conditional E-value: 8.2e-80
  TIGR01846  448 alpelkGaiefenirfryke.dspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekG.aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickg..rtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqqqs 693 
                 +  e +  i+f +++f+y    + ++++ l++ +k+Ge++ ivGpsG Gkst+ +l+ ++y P++G ++  gv ++ ++ awlr ++++v qe vlf+ sirdni+ +  ++ +e + ++ak a  hdfi+e ++ y+t vg    +++sGGq+qria+aral+ +P +l+ldeatsald ese+v+++ l++i+ +  rt++ iahrlst+r++dri+vl++Gk+ esG+h+el+a +g+y +l + qs
  MMETSP1061-20121228|352_1  895 TFFEKEDLITFCDVNFKYPSrPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAAtSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNkhRTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELMALKGHYHRLVHLQS 1144
                 456777889*********6415678********************************************************************************************************************98752689*********************************************954449*********************************************99987 PP

  == domain 4    score: 28.0 bits;  conditional E-value: 2.1e-09
  TIGR01846  195 lsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvre.leqirefltgsaltvvldllfvvvflavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqs...flvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqai.eliqkltaalllwfGakl 386 
                   +l  y f+ +t+r++  +    ++ l+   ++yf++r v  + +++ +  + i +f  +   t+v++l  v+v l v f y   + lv l+ l++ +   + + +  r  + ++ +++ +++s   +++es++ i+t+ + ++e+  ++++ + l +   + fk++  ++ a  +i  l q+l++all+w+G  l
  MMETSP1061-20121228|352_1 1292 GNTLVFYGFGTATERMNKRVRDASFKNLMRQEVAYFDTRAVSAITSQLSDdAAMIHSFSGEPIRTLVMNLASVLVGLVVSFVYMWPFALVALGVLPFMA---FGAEAEQRMYMGEDMDTGEDEKSsgvIVIESLSNIRTVASLSLEDVRSEQYAEALHKEEPTPFKSNC-AKGAWIGIgPLCQQLSFALLFWWGGWL 1484
                 44556677999************************************976267899999989999*******************999999998888654...45555666666666665555443233899**********************************9765.45555555169*************765 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.5   6.3e-06   0.00042     121     327 ..     231     439 ..     206     478 .. 0.86
   2 !  266.9   0.0   1.3e-81   8.3e-80     442     685 ..     607     858 ..     592     859 .. 0.96
   3 !  218.6   0.0   5.3e-67   3.5e-65     453     685 ..     904    1143 ..     900    1144 .. 0.93
   4 !   12.8   0.1   9.7e-05    0.0064     204     438 ..    1304    1541 ..    1267    1550 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.3e-06
  TIGR03797 121 lklldllkfalrga.erdllavllvgllgtllglvvPlatgilldeviPdaerslllqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasra.mgvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKl 327
                 +++++l+fa  ++ + +l++ l+++++ +l+  ++ ++ +  + ++   ++++ + ++al+l+ + + a++ + +qs  +   ++++  +++   +d LLr  ++++    ++  a+ + +  ++ +r l+ ++   +  +i a+  l+  ++ slkl+ + ++++ v+++vt ++  l+ +k++++ e  +k  ++++  +++i  +
  MMETSP1061-20121228|352_1 231 ATVMEVLSFAKTRRaKFNLAMGLAASVMSGLIQPAIAIVFSDSFTNFSNGSDQNGIRNLALILCGLGFYAFATMAMQSTFLETAASEMTDTMKQEWFDALLRQDMAYYDIMDTSGTATIIsTNGRKFKRGLGRKLGDGVQFTITAIGGLAFGFWCSLKLSFLLLAIVPVMAVVTGLVLKLNQTKTARANESYAKAGSIVYSSVSSIRTI 439
                5678999998655548899999999999999999999999999999999*****************************999999************************9987766665540556899*************************************999999999998888888888888888888888888777777655 PP

  == domain 2    score: 266.9 bits;  conditional E-value: 1.3e-81
  TIGR03797 442 kvdpgkLsGaievdrvtFrYekdg.plvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl......kvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelarRQ 685
                 ++p  + G+ie + v+FrY + +   v + ++lki++G+ va+ G+SG GKSt+++lL  F  P+ Gs+l DG+dl++l+v+ +R+q+G V Q+ +l++ si +ni +g +  t de+ eaar+a   + i + P g  T++ + g++lSGGQ+QR+ iAral+ kPri+l+DEATSALD ++  iV e+l+kl      + t +v+AHRLSTi+nad+i vl+ G +ve+G+++eL++++G++++l++ Q
  MMETSP1061-20121228|352_1 607 GMKPKAVVGDIEFKDVSFRYPTRTeVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGRPdATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLirededNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELISRHGAYYDLVQAQ 858
                578999**************76651579**********************************************************************************999*********************************************************************************97776667899********************************************988 PP

  == domain 3    score: 218.6 bits;  conditional E-value: 5.3e-67
  TIGR03797  453 evdrvtFrYek.dgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvi.segggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkv....tRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelarRQ 685 
                 +   v+F+Y +   +++++ + + +++Ge +aivG+SG GKSt+++l+  F +P+ G+++y G  +++l+v+ +R ++  V Q+  l+  si +ni  g +  t+++  ++a++a + + i + P    T++ s +++++SGGQ+QR+ iAral r P++ll+DEATSALD ++ ++V ++l+++      t + iAHRLSTirn+dri+vl++G+v e+G+++eL+a +G +++l++ Q
  MMETSP1061-20121228|352_1  904 TFCDVNFKYPSrPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEdATQEDIEKVAKEANCHDFIMEFPDAYDTIVgSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSnkhrTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELMALKGHYHRLVHLQ 1143
                 566899***6515789********************************************************************************888777******************************4456678********************************************996522226688*****************************************9977 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 9.7e-05
  TIGR03797  204 etavdaslqaavwdrLLrlpasfFreysagdLasramgvsqirrllsgatlkallssifall.nlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvaga...eerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisll..aaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEv 438 
                   +++ +++ a +  L+r ++++F +  ++ ++s+ +  +++ + +sg  +++l+  + ++l  lv+ +vy +  alva+ ++ +++    +   + +        ++ k sg  v +i+++s +r  ++   e+    ++a+   +++ + +k + ++ +   +   ++ l+ a+lf+   +l+    +  s+  fl  + ++   l+++ + a+  ++  +++ + er+  + e + E+
  MMETSP1061-20121228|352_1 1304 TERMNKRVRDASFKNLMRQEVAYFDTRAVSAITSQLSDDAAMIHSFSGEPIRTLVMNLASVLvGLVVSFVYMWPFALVALGVLPFMAFGAEAEQRMYMGEDMD-TGEDEKSSG--VIVIESLSNIRTVASlslEDVRSEQYAEALHKEEPTPFKSNCAKGAWIGIGPLCQQLSFALLFWWGGWLIgkFPKLYSSRGFLISMFSLLFSLSGMAAAAQGATDRGKALAAAERTFALTERKSEI 1541
                 4567888999****************************99999*******9999998888652799*************998766554444333333332222.333333344..334666666664432222777778888888888888888888888888888888888888888888887743223344555665566666666677777777777777777777776666666666 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.4     1e-08   6.8e-07     155     359 ..     244     453 ..     215     469 .. 0.84
   2 !  235.9   0.1   2.6e-72   1.7e-70     438     710 .]     571     856 ..     555     856 .. 0.88
   3 !  226.4   0.0   1.9e-69   1.3e-67     477     709 ..     902    1140 ..     882    1141 .. 0.93
   4 !   23.3   0.0   5.2e-08   3.5e-06     221     422 ..    1303    1508 ..    1260    1525 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1e-08
  TIGR03796 155 allllvlagll.lvlpglvvpafskifvDeilv...eeaqewlrplllgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqln.dkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwa 359
                   + + +gl+  v++gl+ pa++ +f D++     ++ q+ +r l l+l+       + +++q+++l+    +++ ++ ++ +  +lr  + +++   ++  a+ +++n +k  + l+++l   v  +++++  ++  ++ +l l+++ +a+  + +++  lv +  +++++r ++ ++k+ ++++++++si t+    + +d+++++ 
  MMETSP1061-20121228|352_1 244 RAKFNLAMGLAaSVMSGLIQPAIAIVFSDSFTNfsnGSDQNGIRNLALILCGLGFYAFATMAMQSTFLETAASEMTDTMKQEWFDALLRQDMAYYDIMDTSGTATIISTNgRKFKRGLGRKLGDGVQFTITAIGGLAFGFWCSLKLSFLLLAIVPVMAVVTGLVLKLNQTKTARANESYAKAGSIVYSSVSSIRTILSLNAVEDVIAKFE 453
                3455566777526899*************9864221456777888877777777777788899********************************************999456888999***9999999999999999999999999999999999999999999******************************999888888888876 PP

  == domain 2    score: 235.9 bits;  conditional E-value: 2.6e-72
  TIGR03796 438 eleadlerldDvlenpvdeelee.....eeekaaeseek....ekLsGkvelrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr......RgctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarLir 710
                + e+dl++ +D+ +  + +++ +     +    ++s+++    + + G +e+++v+f y +++e  + ++++l++k G+ vAl G+sG Gksti +l+  +y+p+ G+il+Dg+++++++ + l++ + lv+q+  lf+ ++ dn+    +  +++++++Aa+ A  hd i++ p+gy++ + ++g+ lsGGq+qR+ iARaL+++P i++lDEatsaLD+e E +++e+l +       + t+++vaHRLsti+++d i vl  G++ve+G+H+el++++gaY +L++
  MMETSP1061-20121228|352_1 571 QTETDLKKDEDMRKSLQRRSTLNslphyQ---IDSSSPSgmkpKAVVGDIEFKDVSFRYpTRTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKliredeDNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELISRHGAYYDLVQ 856
                55677777777766555555444343321...22222223445889*************5578899****************************************************************************************************************************************************************9998764332222478********************************************986 PP

  == domain 3    score: 226.4 bits;  conditional E-value: 1.9e-69
  TIGR03796  477 kvelrnvtfgy.saleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaeg.ganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr....rRgctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarLi 709 
                  +++ +v+f y s+ e+++ +++++ +k+G+ +A+vG+sG Gkst+ +l+  +y+p +G+i++ g+p ++++ + l+n ++lv q+ vlf+ ++rdn+ +  e  ++ed+++ ak+A  hd i++ p++y++ +     + +sGGq+qR+ iARaL ++P +L+lDEatsaLD+e E+ ++++l     ++  t++ +aHRLstiR++d+iivl++Gkv e GtH+el+a +g+Y+rL+
  MMETSP1061-20121228|352_1  902 LITFCDVNFKYpSRPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAaTSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDnitsNKHRTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELMALKGHYHRLV 1140
                 577889*****667899**********************************************************************************9999999***************************987615789**************************************98875222257789999*****************************************8 PP

  == domain 4    score: 23.3 bits;  conditional E-value: 5.2e-08
  TIGR03796  221 leiklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsgq.lattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvleg.el..tiGmlvafqsllasf 422 
                  + ++  ++    +++++r  v +f+ Ra + i+s ++ ++ + +  sg+ + t v++l  v++ ++v ++y + +al+a+ +    ++  ++ +r+ + + +   +d+     ++i++l++i t+   +le+   +++a +  k   +  + + a+     +  l ++l+ al+ ++gg+++ +  +l  + G l+++ sll s+
  MMETSP1061-20121228|352_1 1303 ATERMNKRVRDASFKNLMRQEVAYFDTRAVSAITSQLSDDAAMIHSFSGEpIRTLVMNLASVLVGLVVSFVYMWPFALVALGVLPFMAFGAEAEQRMYMGEDMDTGEDEKSSGVIVIESLSNIRTVASLSLEDVRSEQYAEALHKEEPTPFKSNCAKGAWIGIGPLCQQLSFALLFWWGGWLIGKFpKLysSRGFLISMFSLLFSL 1508
                 4445555566666889999*****************998887777766652788899999*******************9999888888888888888888888888998889999***********99***99999999999999999999999888888889999**************9965312222667777777777665 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.2    0.0093      0.61     149     232 ..     380     464 ..     232     504 .. 0.69
   2 !  247.6   0.0   8.2e-76   5.4e-74     329     570 ..     611     858 ..     593     872 .. 0.93
   3 !  214.2   0.0   1.1e-65   7.1e-64     333     575 ..     901    1148 ..     885    1160 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0093
  TIGR01192 149 pvalamdlrlslvlvvlgivyvliaklvmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftek.llsaq 232
                   +   l+ls++l+++  v  +++ lv++  +   a  +e y +  + v  s+s +  + s n +e+   ++++ t++  l a 
  MMETSP1061-20121228|352_1 380 AFGFWCSLKLSFLLLAIVPVMAVVTGLVLKLNQTKTARANESYAKAGSIVYSSVSSIRTILSLNAVEDVIAKFEEATKEaYLGAT 464
                456777899*******999999******99888888999999*************************999999888865145554 PP

  == domain 2    score: 247.6 bits;  conditional E-value: 8.2e-76
  TIGR01192 329 knvkgavefrdisfefan.ssqgvrd.vsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrk....nrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllras 570
                k+v+g++ef+d+sf ++  ++  v++ + +++kag tva+ gp+g gk+t+i+ll+r ydp+ g il+dg+d++ ++ + lrk i  v q+  l+  si +ni+ gr dat +ev eaa+ a a+dfi +  +gy+t+vg+ g++lsgg++qr++iara++    i++ldeatsald e+e+ v++a+d l +    nrt  ++ahrlst+++ad++  l  g ++e g  +eli ++g ++ l++a 
  MMETSP1061-20121228|352_1 611 KAVVGDIEFKDVSFRYPTrTEVDVYNgLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIRededNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELISRHGAYYDLVQAQ 858
                789*************9625567876599****************************************************************************************************************************************************************985323338**********************************************9874 PP

  == domain 3    score: 214.2 bits;  conditional E-value: 1.1e-65
  TIGR01192  333 gavefrdisfefans..sqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvger.gnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalr..knrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllrasgllie 575 
                   + f d++f+++    +q  + + + +k g+t+aivgp+g gk+t+i+l+++ y p+ g i   gv ++ ++   lr+ ++ v q+  l++ sir+nir+g edat+e++ + ak a  +dfi +  ++ydt+vg    +++sgg++qr+aiara+l++  +l+ldeatsald e+e  v+da+d ++  k+rt   iahrlst+r++d ++ l++g++ e g+ del+  +g++ +l++   l  +
  MMETSP1061-20121228|352_1  901 DLITFCDVNFKYPSRpeQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAaTSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITsnKHRTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELMALKGHYHRLVHLQSLDDD 1148
                 5689********9743145556799***************************************************************************************************************86268*********************************************996226689999*****************************************998877544 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.44        29     116     154 ..     303     340 ..     287     351 .. 0.76
   2 !    8.6   0.1    0.0016      0.11     283     398 ..     383     498 ..     372     505 .. 0.71
   3 !  230.5   0.1   1.2e-70   7.6e-69     448     690 ..     600     846 ..     577     850 .. 0.92
   4 !  203.8   0.0   1.4e-62   9.5e-61     465     690 ..     902    1131 ..     882    1135 .. 0.94
   5 !    9.4   0.0   0.00089     0.059     219     397 ..    1306    1486 ..    1282    1504 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.44
  TIGR03375 116 ilvkpeakldkraeelekakkkhWfwstlkeskrlyrdv 154
                +++ +++ l++ a+e+++++k++Wf   l++ +++y d+
  MMETSP1061-20121228|352_1 303 TMAMQSTFLETAASEMTDTMKQEWFDALLRQDMAYY-DI 340
                344444556999*************88777776655.55 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0016
  TIGR03375 283 aliggplvlvplvavplvllv.glllqkplsklaeeslresaqknal.lveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliae 398
                ++ + +l ++ l++vp++ +v gl+l  +l+++ ++ ++es +k +  ++ s++ + ti  lna + + +k+e+++++    ++ + ++   +  + ++v  ++++ + + G+yl+ +
  MMETSP1061-20121228|352_1 383 FWCSLKLSFLLLAIVPVMAVVtGLVL--KLNQTKTARANESYAKAGSiVYSSVSSIRTILSLNAVEDVIAKFEEATKEAYLGATGQVVYIGAANGSLMAVFLFAYLPLTLYGSYLMYK 498
                56677888888989988866515555..478888888888888887515689**********************99876544443334444444444455556666677777776655 PP

  == domain 3    score: 230.5 bits;  conditional E-value: 1.2e-70
  TIGR03375 448 vereeekrllsreklkGeielknvsfkYpeeek.aaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella....dkTlvlvtHrtslLelvdriivldkGrivadGpkdevle 690
                 + +++ + ++ + + G+ie+k+vsf+Yp +++  + + ++lkik+G  va+ G  G GKst+ +ll ++y+pt Gs+lldg+d++ ++++ lr++ig+v+q+++Lf+ ++ dNi+ g+p a+ +e+ +aa++a +++f+ + p+G+++++g++G++LSgGQ+q +++aRal+ +p+i+lLDE tsalD++se  + e+L +l++    ++T+v+v+Hr s ++ +d i vl+ G+iv  G ++e+++
  MMETSP1061-20121228|352_1 600 ID-SSSPSGMKPKAVVGDIEFKDVSFRYPTRTEvDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIRededNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELIS 846
                44.555667888999*************987761566789************************************************************************************************************************************************************999999987555679******************************9999876 PP

  == domain 4    score: 203.8 bits;  conditional E-value: 1.4e-62
  TIGR03375  465 eielknvsfkYpee.ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerG.esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevle 690 
                  i + +v+fkYp + e++  + +++ +k Ge +ai+G  G GKst+ +l+ ++y+p++G++ + gv ++ +++a lr+++++v+q+++Lf  ++rdNi +g + a++e++ ++a+ a  ++f+ + p+ +d+ +g    +++SgGQ+q +a+aRall+dp++llLDE tsalD++se+ + ++L ++++  ++T+v ++Hr s ++  driivl++G++   G++de+++
  MMETSP1061-20121228|352_1  902 LITFCDVNFKYPSRpEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAAtSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSnkHRTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELMA 1131
                 58999******98725667799****************************************************************************************************************9876268*********************************************9987799********************************99875 PP

  == domain 5    score: 9.4 bits;  conditional E-value: 0.00089
  TIGR03375  219 kvdlilsaklfervlglrlea.rpasvGsfasqlrefesvrdfltsatltal.vDLpfvllfllvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvylia 397 
                 +++ ++ ++ f+ +++ +++  + + v +++sql +   +   ++ + + +l + L+ vl+ l+v ++  +p +lv l ++p++   + + q++       + +  ++   +++esl+++ t+  l+ e  + +++ +++++   +  k+   +   + +  l+qql+  ++  +G +li 
  MMETSP1061-20121228|352_1 1306 RMNKRVRDASFKNLMRQEVAYfDTRAVSAITSQLSDDAAMIHSFSGEPIRTLvMNLASVLVGLVVSFVYMWPFALVALGVLPFMAFGAEAEQRMYMGEDMDTGEDEKSSGVIVIESLSNIRTVASLSLEDVRSEQYAEALHKEEPTPFKSNCAKGAWIGIGPLCQQLSFALLFWWGGWLIG 1486
                 5555555566666666665542455677777777766655555555666554168999999999999999******99999999877777776655555555556666677899**********************************************************999999985 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.6   8.6e-07   5.7e-05       4     215 ..     248     458 ..     245     471 .. 0.94
   2 !  226.6   0.0   2.2e-69   1.4e-67     313     528 ..     605     829 ..     559     830 .. 0.91
   3 !  186.0   0.0   4.5e-57     3e-55     316     529 .]     898    1115 ..     871    1115 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 8.6e-07
  TIGR02857   4 alalaallgvvsallliaqAallarvvssliaagealaelltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikrisee 215
                 la+ ++++v+s+l+  a+A++ + ++ +  ++g++++ ++ ++++l ++ +   ++  ++    ++aa e++++++++ +++++++  a+   ++++ +at++ ++ ++ +  + r l   v+ +i+ +  la+ ++ ++    +ll  +P++ +   L+ +  q ++ +  ++ ++ ++ +   v+ + t+  +++++  +a+ +++++e
  MMETSP1061-20121228|352_1 248 NLAMGLAASVMSGLIQPAIAIVFSDSFTNF-SNGSDQNGIRNLALILCGLGFYAFATMAMQSTFLETAASEMTDTMKQEWFDALLRQDMAYYDIMDTSGTATIISTNGRKFKRGLGRKLGDGVQFTITAIGGLAFGFWCSLKLSFLLLAIVPVMAVVTGLVLKLNQTKTARANESYAKAGSIVYSSVSSIRTILSLNAVEDVIAKFEEATKE 458
                56777888999999999************9.************************************************************************************************************************************************************************9999999887654 PP

  == domain 2    score: 226.6 bits;  conditional E-value: 2.2e-69
  TIGR02857 313 pltaaass...slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela....egrtvllvaHrlalaeladkivv 528
                p+  +++     +e+++vs++y+ r+  ++ ++++l++++g++val+G+SG GKst+++ll +f +pt G+il++g++l++l+ + +rkqi+ v+Q+P lf+ ++a+ni+ +r+da+++ev+ea+++a++++++ + p+g++t++G++g++LSgGq+qR+++Aral+ + +++llDE t++LD+e+e  v+eal++l+    ++rtv++vaHrl+++++ad i v
  MMETSP1061-20121228|352_1 605 PSGMKPKAvvgDIEFKDVSFRYPTRTevDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIredeDNRTVVVVAHRLSTIKNADMIAV 829
                333333336679**********88887899********************************************************************************************************************************************************************9998554469*****************9976 PP

  == domain 3    score: 186.0 bits;  conditional E-value: 4.5e-57
  TIGR02857  316 aaassslelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGerg.agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkivvl 529 
                 +++   +++ +v+++y+ r   ++ +++++ v+ ge++a+vG+SG GKst+++l+  f +p++G+i   g+++++l+ + +r++++ v+Q+P+lf+ ++++nir++ +da+++++++++++a+ ++++ + p+ ++t +G+++ +++SgGq+qR+a+Arallrd +llllDE t++LD+e+e  v++al++++  + rt++ +aHrl+++++ d+i+vl
  MMETSP1061-20121228|352_1  898 EKE-DLITFCDVNFKYPSRPeqQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAAtSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITsnKHRTIVQIAHRLSTIRNSDRIIVL 1115
                 222.38**********998776789******************************************************99***********************************************************986268*********************************************99556789999**************986 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.1     0.058       3.8     295     363 ..     387     455 ..     371     481 .. 0.83
   2 !  196.8   0.0   2.2e-60   1.5e-58     468     707 ..     611     856 ..     592     857 .. 0.92
   3 !  188.3   0.0   7.9e-58   5.2e-56     473     707 ..     902    1141 ..     888    1142 .. 0.92
   4 !   23.2   0.0   6.9e-08   4.6e-06     195     386 ..    1278    1467 ..    1269    1501 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.058
  TIGR01193 295 iklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidse 363
                 kl +l l  +Pv av+  l  k  +     a e+ a   s +  +++ i ti sl++ e    k ++ 
  MMETSP1061-20121228|352_1 387 LKLSFLLLAIVPVMAVVTGLVLKLNQTKTARANESYAKAGSIVYSSVSSIRTILSLNAVEDVIAKFEEA 455
                56778889999******99999999888889999999999999999**********9988888887764 PP

  == domain 2    score: 196.8 bits;  conditional E-value: 2.2e-60
  TIGR01193 468 enlngdievndvsysyGygse..vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldllte...kkivenllkl..kdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyaslih 707
                + + gdie++dvs++y   +e  v + ++lkik+  +++l G sG Gkst+++ll +f++++ G ill+g++lkd++ + lr+ i  + qeP +f+ si +n+    +++++ +e+++a + a+ +d i  +p Gy+t + +e+s++sgGqkqr+++aral+++ ++++lde+ts ld   e   +  +++l++   +++t++ vahrls  k++d i vl+ G i+e+G+hkel++++G y++l++
  MMETSP1061-20121228|352_1 611 KAVVGDIEFKDVSFRYPTRTEvdVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKA-GRPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEvivQEALDKLIREdeDNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELISRHGAYYDLVQ 856
                56789***********98765227999***************************************************************************875.58999*******************************************************************8655222667788887522469*******************************************9986 PP

  == domain 3    score: 188.3 bits;  conditional E-value: 7.9e-58
  TIGR01193  473 dievndvsysyGy..gsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelsee.assisgGqkqrlalarallsdskvlildestsnldlltekki...venllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyaslih 707 
                  i++ dv+++y     +++++ +++ +kk e++++vG sG Gkst+++l+ +f+ ++ G+i   g+ ++d++   lr+ ++ + qeP++f+ si +n+ +g  e+++qe+i+k+ + a+ +d i ++p  y+t + +  +s++sgGqkqr+a+arall d ++l+lde+ts ld   e+ +   ++n+ + k++ti+ +ahrls  ++sd+iivl++Gk+ e+G+h+el++ +G+y++l+h
  MMETSP1061-20121228|352_1  902 LITFCDVNFKYPSrpEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGL-EDATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAaTSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVqdaLDNITSNKHRTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELMALKGHYHRLVH 1141
                 477889999998622589*********************************************************************************997.67899*************************996651678**********************************99877222566666789**********************************************98 PP

  == domain 4    score: 23.2 bits;  conditional E-value: 6.9e-08
  TIGR01193  195 lgiislglilayilqqvlsyikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalast.ilslfldlsilvivglvlvlqniklflls.lvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalka 386 
                 ++ i +gl++a ++ + l +     +   + r+ + +     k l+   +++f tr v  i+s+++d +++i +++   i +l ++l+  v+vglv+ +  +  f l+ l ++P  a    + ++++   + d+ e +      +ie+l+ i t+ sl+ e+ r ++  + +++     +k + a+     +  
  MMETSP1061-20121228|352_1 1278 ISYIYIGLMVAALVGNTLVFY---GFGTATERMNKRVRDASFKNLMRQEVAYFDTRAVSAITSQLSDDAAMIHSFSGEpIRTLVMNLAS-VLVGLVVSFVYMWPFALVaLGVLPFMAFGAEAEQRMYMGEDMDTGEDEKSSGVIVIESLSNIRTVASLSLEDVRSEQYAEALHKEEPTPFKSNCAKGAWIGIGP 1467
                 566667777776666666653...3334455666666666778999999************************9987626678888875.6799999999999886651557799999999999999999999999998888889******************9998777666555555555555555555554 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   0.0   5.8e-62   3.8e-60     310     542 ..     610     846 ..     581     848 .. 0.92
   2 !  167.9   0.0     1e-51   6.7e-50     326     541 ..     913    1130 ..     897    1132 .. 0.93

  Alignments for each domain:
  == domain 1    score: 201.8 bits;  conditional E-value: 5.8e-62
  TIGR01842 310 lPepegelevenvslvppeekk.ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkel...karkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542
                  ++ g +e ++vs++ p+  + ++ +g+++++kaG ++a+ Gpsg Gks++ +ll   + p+ Gs+ lDg+dlk  + + l k+iG + q+ +Lf+ ++a+ni   + +a++++v eaa+ a++h++i+++p+GY+t +g++G++LsgGq+qRi++aRal  +P++++LDe  + LD+e e+ + +al +l    + ++tvvv++hr s ++ +d+i+vl+ G++ + G+++e+++
  MMETSP1061-20121228|352_1 610 PKAVVGDIEFKDVSFRYPTRTEvDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLireDEDNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELIS 846
                4556788999999999887766378899******************************************************************************999********************************************************************************98732234579********************************99876 PP

  == domain 2    score: 167.9 bits;  conditional E-value: 1e-51
  TIGR01842  326 ppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigeg.GaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelka.rkitvvvithrpsllelvdkilvlkdGalkafGereevl 541 
                 p++ ++++++g+++ +k+Ge+lai+Gpsg Gks++ +l+   + p +G++   g+ ++  +   l +++  + q+  Lf+ ++ +ni    e+a++e++ + ak a+ h++i+++p+ Ydt +g++  +++sgGq+qRia+aRal +dP l++LDe  + LD+e e  + +al ++   +++t+v i+hr s ++  d+i+vl++G++++ G+++e++
  MMETSP1061-20121228|352_1  913 PSRPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAaTSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSnKHRTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELM 1130
                 5567889********************************************************************************655689*******************************862578*********************************************98615568888****************************9987 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1       4.3   2.8e+02     155     224 ..     389     457 ..     372     481 .. 0.54
   2 !  191.1   0.0   1.1e-58     7e-57     298     530 .]     580     818 ..     532     818 .. 0.92
   3 !  164.1   0.0   1.5e-50     1e-48     331     530 .]     899    1103 ..     877    1103 .. 0.91
   4 ?   -2.0   0.2       3.3   2.2e+02      83     167 ..    1306    1390 ..    1303    1405 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 4.3
  TIGR02868 155 aalvlaaallvalvvaplvslraarsaeqalarlrselaaq...lldllegaaelvvaGaleavlaqveeaer 224
                +       ll+++ v+++v+ ++ + ++ + ar+ +++a++   + + +++  ++    a e+v+a+ eea +
  MMETSP1061-20121228|352_1 389 LSF----LLLAIVPVMAVVTGLVLKLNQTKTARANESYAKAgsiVYSSVSSIRTILSLNAVEDVIAKFEEATK 457
                333....334444444444444444444444444444443311144444444455555555555666555555 PP

  == domain 2    score: 191.1 bits;  conditional E-value: 1.1e-58
  TIGR02868 298 trvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaete...eelledLl.aaeegrtvvlvthrl 530
                + +r++++R + +   +  + ++s+p   + ++   ++e++d+s++yp+  e  v +g++l++++G  va+ G+sG GKst+++ll ++ dp  G+++ldg+++++l+ + +r+ + ++ q++ lF+ ++ +N++ +rpdat +e+++a +++  +d + ++pdG++t +g++g++lSGG++qR+ +ARaL+a+ +++lLDE t  LD e e   +e l++L+ + e++rtvv+v+hrl
  MMETSP1061-20121228|352_1 580 EDMRKSLQRRSTLNSLPHYQIDSSSPSGMKPKAVVGDIEFKDVSFRYPTRTEvdVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEvivQEALDKLIrEDEDNRTVVVVAHRL 818
                5678888888888887766666666666665556779************998899**********************************************************************************************************************************************************9974445666677658889999******86 PP

  == domain 3    score: 164.1 bits;  conditional E-value: 1.5e-50
  TIGR02868  331 ekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgegga.rlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530 
                 ++  +++ d++++yp  +e  +++g+++ +++Ge +a+vG+sG GKst+++l+  +  p++G++   gv++++l+   +r+++s++aq++ lFd ++r+N+r++ +dat+e+++++ +++  +d + ++pd +dt +g+ ++ ++SGG++qR+a+ARaLl d ++llLDE t  LD e e+ + ++L     ++ rt+v ++hrl
  MMETSP1061-20121228|352_1  899 KEDLITFCDVNFKYPSRPEqqIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAATsQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDniTSNKHRTIVQIAHRL 1103
                 445567899******988778*********************************************************************************************************************998627**********************************9998888887445566777999*9986 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 3.3
  TIGR02868   83 rslgelRvrvYerLaraalallarlrrGdlLarlvaDvdalqdll...vRvivPlvvAlvvalaavaliallsvaaalvlaaallval 167 
                 r+ +++R + +++L r++ a         + ++l++D   ++ +    +R++v  +++++v+l++   +++ ++++alv++ +l  ++
  MMETSP1061-20121228|352_1 1306 RMNKRVRDASFKNLMRQEVAYFDTRAVSAITSQLSDDAAMIHSFSgepIRTLVMNLASVLVGLVV---SFVYMWPFALVALGVLPFMA 1390
                 67788999999999999999988888889999999997777766533378877776666666554...55667888888777665554 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.5   0.0   3.8e-43   2.5e-41       4     233 ..     619     847 ..     616     851 .. 0.86
   2 !  117.4   0.0     2e-36   1.3e-34      13     231 ..     917    1130 ..     903    1137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 139.5 bits;  conditional E-value: 3.8e-43
  TIGR00972   4 vknlklfy...gekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiat....ekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                 k++++ y   +e  + + +nl+ik+ + +al GpsG Gkst+++ l r+ d +      G++ll+g+d+ d   +v+ lrk++G+v q+p+ f++si dn+  g       + +e  + +++     ++ d  ++ + +++ +LsGGq+qr++iaral  +P ++LlDe tsaLD+++     e +++li+e +++ t+v+v h ++ +++ +d +a++  G++ve+g+ ++++++
  MMETSP1061-20121228|352_1 619 FKDVSFRYptrTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPT-----YGSILLDGTDLKDL--NVKWLRKQIGLVSQEPKLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEvivqEALDKLIREDEDNRTVVVVAHRLS-TIKNADMIAVLSGGTIVETGKHKELISR 847
                56666666222344567899********************************98.....8*********9875..9999**************************7777666667777777777777899**********************************************987611114556677777899*********97.57789*****************999865 PP

  == domain 2    score: 117.4 bits;  conditional E-value: 2e-36
  TIGR00972   13 ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksa.lsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnmqqaarvsdktaffleGelveegeteqif 231 
                 e++  + +++ +kk +  a++GpsG Gkst+++ + ++         +G+++++g  ++d   +v+ lr+++ +v q+p  f +si dn+ +gl+    +d +++ + ++       + d+  + + ++a  ++sGGq+qr++iaral  +Pe+lLlDe tsaLD+++ + +++ ++++ ++   tiv + h ++ ++r sd+++++ +G++ e+g+ ++++
  MMETSP1061-20121228|352_1  917 EQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPD-----RGTIFYHGVPMTDL--NVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAYDTIVGSAAtSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNkhRTIVQIAHRLS-TIRNSDRIIVLNNGKVRESGTHDELM 1130
                 56788999*************************999988766.....8*******998875..999****************************9886555555555444444444455555444444441569********************************************9865448********97.6899****************999886 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.9   0.0   8.2e-43   5.4e-41    1267    1517 ..     597     855 ..     573     859 .. 0.91
   2 !  115.3   0.0   5.5e-36   3.6e-34    1299    1515 ..     918    1138 ..     891    1145 .. 0.90
   3 ?    4.7   0.2     0.012      0.82     898    1111 ..    1162    1383 ..    1139    1406 .. 0.59

  Alignments for each domain:
  == domain 1    score: 137.9 bits;  conditional E-value: 8.2e-43
  TIGR00957 1267 pwqieetappsswpk..sgrvefrnyslry..redldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpf.sqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqst....irtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqrgifysma 1517
                  +qi+ ++p    pk  +g++ef++ s+ry  r ++d v + ln++i+ g  v + g +g gks++   l r  + + g i +dg ++ ++ ++ lr ++ ++ q+p lf+ s+  n+     + + +ev  a   a  +df+ + pd+ +    + g +ls gq+q + +aral+ k +i++ldeat+a+d e++ ++q +    ir + ++ tv+ +ahrl ti +   + vl  g + e +   el+++ g +y + 
  MMETSP1061-20121228|352_1  597 HYQIDSSSPSGMKPKavVGDIEFKDVSFRYptRTEVD-VYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGrPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEAldklIREDEDNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELISRHGAYYDLV 855 
                 589999999988887446************5555565.7899***************************************************************************987514667889*******************************************************************999975344489999**********************************************986 PP

  == domain 2    score: 115.3 bits;  conditional E-value: 5.5e-36
  TIGR00957 1299 dlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnld.pfsqysdeevwlalelahlkdfvsalpdkldfec.aeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstir..tqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqrgifys 1515
                 + +++ l++ ++ ge + ivg +g gks++   + +     +g i   g+ ++++ +  lr +++++ q+pvlf  s+r n+   + + ++e++    + a  +df+   pd  d    +    ++s gq+q + +arallr   +l+ldeat+a+d e++ ++q ++   t  ++ t++ iahrl ti +  r++vl++g+v+e ++  el++ +g ++ 
  MMETSP1061-20121228|352_1  918 QQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRfGLEDATQEDIEKVAKEANCHDFIMEFPDAYDTIVgSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDniTSNKHRTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELMALKGHYHR 1138
                 35678999**********************99999**********************************************973578899************************98762667789****************************************998633778899**************************************998875 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.012
  TIGR00957  898 vvgkqlqrqlsasssdsedtsrhlsssaelqkaeakeetwklmead.kaqigqvklsvywdyakaiglfitllsillfl.....cnsvsa.lasnywlslwtddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggi..lasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillat.plaavii 1111
                  v+  l   ls     +  +  h++  +el+k++ak++++    ++    ig +   +        g+  ++++ ll++     c++ s  +  n+       d+v +  + ++++++s y  +g++  ++v    +    g       +++  + ++n +r   ++f++     +  ++s +  ++ s   e i+ l+  l +v+  ++v ++   p+a v +
  MMETSP1061-20121228|352_1 1162 QVSESLVESLSDPENAGSTNVVHHAKNSELEKSNAKKAKGLAKGDEyYLLIGAIGALLAGLIFPGWGFTFAYMVELLYFnpvfpCEESSVeVLFNFTTCQGYWDSVRNDMR-KQSFQIS-YIYIGLMVAALVGNTLVFYGFGTAteRMNKRVRDASFKNLMRQEVAYFDTRAVSAITSQLSDDAAMIHSFSGEPIRTLVMNLASVLVGLVVSFVYMwPFALVAL 1383
                 345566777777777777777888888888888888655533333313456666554444444555555555555555511111333322122333333333344444332.3445554.44455544443332222222222211345667788999****************************************99999999888876654315444433 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.0   0.1   2.4e-38   1.6e-36      10     219 ..     636     846 ..     628     857 .. 0.86
   2 !  126.7   0.2   3.6e-39   2.4e-37      12     218 ..     924    1130 ..     918    1140 .. 0.87

  Alignments for each domain:
  == domain 1    score: 124.0 bits;  conditional E-value: 2.4e-38
  TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglell...kideqerkekalealklv..dleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvkl..qkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilr 219
                n ++l+i+ G  + + G+sG Gkst+++ll+r+ +Pt G il+dG d+ +++ + l    rk+i++v q+  lf   +i dni+ g   +   +++e  rk  a + +     + +  +     +lsGG++qr+ +aral a+P ++l+dea sald      +q+ l kl  +++ ++t+v ++h l  +++ +d i++l  G iv  G   e++ 
  MMETSP1061-20121228|352_1 636 NGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWL----RKQIGLVSQEPKLFA-ISIADNIKAGRPDAtsdEVEEAARKANAHDFIMSFpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLirEDEDNRTVVVVAHRLS-TIKNADMIAVLSGGTIVETGKHKELIS 846
                6789************************************************9999....*************96.79******99755411156677788888887755421234445555668*********************************************94445689**********6.79******************9998765 PP

  == domain 2    score: 126.7 bits;  conditional E-value: 3.6e-39
  TIGR01186   12 vdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdleeyedry........PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeil 218 
                 +++ +++Ge + i+G+sG Gkst+++l++++  P +G i+  G+ +++++ a l    r ++++v q+  lf   +i dni +gle +  ++ e+   a+ea     + e+ d+y          ++sGG++qr+ +aral  +P+lll+dea sald      +qd l ++ ++ ++tiv i+h l  ++r +dri++l++G++   Gt de++
  MMETSP1061-20121228|352_1  924 LEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWL----RNRMSLVAQEPVLF-DISIRDNIRFGLEDATQEDIEKV--AKEANCHDFIMEFPDAYdtivgsaaTSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLS-TIRNSDRIIVLNNGKVRESGTHDELM 1130
                 57889*************************************************....99********9999.589********997765555544..4444333333566666622222222579*************************************************************6.79*********************986 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0     2e-33   1.3e-31       2     225 ..     617     850 ..     616     859 .. 0.86
   2 !  112.6   0.0   6.1e-35     4e-33      13     222 ..     917    1132 ..     903    1140 .. 0.86

  Alignments for each domain:
  == domain 1    score: 107.7 bits;  conditional E-value: 2e-33
  TIGR03864   2 leveglsfaygkrrald...dvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlry...haaLhGlsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvree..glsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaeada 225
                +e +++sf+y +r+ +d   +++l+++ g+ vaL Gp G Gkst+++ll r y+ + g+i + G+dl++ +++ l+ ++G+v q++ l   +s++ n++     a+   + +a+ +++ ++ +  +  g +    ++  +L+GG+++r+ iaral+ +P+++LlDeat  LD es   ++e++ +l+re+  + +v+   h +  ++++d + vl  G ++ +G+ +el ++++a
  MMETSP1061-20121228|352_1 617 IEFKDVSFRYPTRTEVDvynGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRkQIGLVSQEPKL-FAISIADNIKAgrpDATSDEVEEAARKANAHDFIMSFpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREDedNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELISRHGA 850
                678999****988765422289*************************************************9999637********99.679******85222566777777666666666666553366777888889***********************************************987522679999******************************9987764 PP

  == domain 2    score: 112.6 bits;  conditional E-value: 6.1e-35
  TIGR03864   13 krralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlry...haaLhGlsraeaeerieealarl.glaera..eekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaae 222 
                 ++++++++++ v+kge  a++Gp G Gkst+++l+ + y+ ++g+i   G+ +++ +++ l+ r+ +v q++ l  d+s++ n+r+    a+ + + + + e++ ++ + ++ +  +    ++   +++GG+++r+ iarall +P+lLLlDeat  LD es + +++++ +++ ++  +++   h +  ++++dr++vl++Gkv+ +G+ +el+a 
  MMETSP1061-20121228|352_1  917 EQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRnRMSLVAQEPVL-FDISIRDNIRFgleDATQEDIEKVAKEANCHDFIMEFpDAYDTIvgSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIRNSDRIIVLNNGKVRESGTHDELMAL 1132
                 4578999****************************************************997479999999988.8**********44447777788777777777766655233333211455789**************************************************************************************9875 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.0     7e-33   4.6e-31      12     220 ..     631     846 ..     617     856 .. 0.78
   2 !  110.3   0.0   3.3e-34   2.2e-32      14     219 ..     919    1130 ..     906    1138 .. 0.86

  Alignments for each domain:
  == domain 1    score: 106.0 bits;  conditional E-value: 7e-33
  TIGR00968  12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleirkkdkak...ikakveellelv..qleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrkl..hdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220
                ++ + + ++l++k G  val GpsG Gkst+++++  + +p+ G ill+G+d   ++v+  +++iG+v q+  lf  +++ dni  G      d+ +    ka+ ++++     + + +     sqlsGGq+qr+++aral  +p+++llde  +ald++    +++ l kl   de + t v+v+h    +++ ad i+vl+ G i + g  +e+  
  MMETSP1061-20121228|352_1 631 EVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKwlRKQIGLVSQEPKLFA-ISIADNIKAGRPDATSDEVEeaaRKANAHDFIMSFpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLirEDEDNRTVVVVAHRL-STIKNADMIAVLSGGTIVETGKHKELIS 846
                45677899*********************************************9887765489************6.89********8766555544000444444443332234566777789**********************************9866666666666632355566777777765.57889***************99998765 PP

  == domain 2    score: 110.3 bits;  conditional E-value: 3.3e-34
  TIGR00968   14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelv.ql.....eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevy 219 
                 q+++ +++ vk+G+  a++GpsG Gkst++++i  + +pd G+i+ +G  +t ++v   + ++ +v q+  lf  +++rdni fGle   ++  ++ ak  +  +++ ++     + +g+   sq+sGGq+qr+a+aral  +p++lllde  +ald++  + ++  l ++  + + t v ++h  + ++  +dri+vl++Gk+ + g+ +e++
  MMETSP1061-20121228|352_1  919 QIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAwlRNRMSLVAQEPVLFD-ISIRDNIRFGLEDATQEDIEKVAKEANCHDFImEFpdaydTIVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLS-TIRNSDRIIVLNNGKVRESGTHDELM 1130
                 67788999*****************************************99988764326779********995.9**********9887666665555555544431331112245678889*************************************************************887.56779****************99986 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   1.1e-34   7.4e-33       2     233 ..     617     844 ..     616     849 .. 0.84
   2 !  102.7   0.1   6.6e-32   4.4e-30       2     231 ..     903    1127 ..     902    1133 .. 0.81

  Alignments for each domain:
  == domain 1    score: 111.8 bits;  conditional E-value: 1.1e-34
  TIGR02315   2 levenlskvypngk..qalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgaks.tlksllglfseedkekAlelLerv..glaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinke..kgitvivnlHqvdlakkyadrivglkageivfdgassel 233
                +e++++s +yp+ +   + + +nl+ik G  va+ G+sG Gkst+++ ++r+ +++ gsill+g+++++l+   ++ lrk+ig+++qe +l +  ++ +n+  gr  a+s  +++  +       ++A + +  +  g + +     +qLsGGq+qR++iaRal+ +p++il DE +++LD +s  +v ++l ++ +e  ++ tv+v  H+++  k+ ad i  l  g+iv  g+ +el
  MMETSP1061-20121228|352_1 617 IEFKDVSFRYPTRTevDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLN---VKWLRKQIGLVSQEPKLFA-ISIADNIKAGRPDATSdEVEEAARK------ANAHDFIMSFpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdeDNRTVVVVAHRLSTIKN-ADMIAVLSGGTIVETGKHKEL 844
                789999999997651156899*********************************************99775...667789********99986.6899******986654144544433......344444443333788999999**********************************************99987522689*********98865.999999*******99998876 PP

  == domain 2    score: 102.7 bits;  conditional E-value: 6.6e-32
  TIGR02315    2 levenlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrl.gakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgass 231 
                 + + +++ +yp+  ++q+++ +++ +kkGe +a++G+sG Gkst+++ i+++ ++++g+i+ +g  +t+l+   +  lr++++++ qe  l +  ++ +n+  g   ++++ ++++ +  + +d     e  +  + + + +  ++q+sGGq+qR+aiaRal+++p+l+l DE +++LD +s + v d+l +i+ +k  t++   H+++  ++ +dri+ l++g++   g+ +
  MMETSP1061-20121228|352_1  903 ITFCDVNFKYPSrpEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLN---VAWLRNRMSLVAQEPVLFD-ISIRDNIRFGLEdATQEDIEKVAKEANCHDFIM--EFPDAYD-TIVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIRN-SDRIIVLNNGKVRESGTHD 1127
                 5666777888763368999*********************************************9999775...667789********87765.788999966643134445555555544444433..3333333.2233455789*************************************************************98875.9**********97666655 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.0   5.3e-33   3.5e-31      20     245 ..     628     850 ..     617     863 .. 0.85
   2 !  102.4   0.0   9.2e-32   6.1e-30      21     247 ..     915    1138 ..     905    1155 .. 0.85

  Alignments for each domain:
  == domain 1    score: 106.5 bits;  conditional E-value: 5.3e-33
  TIGR02769  20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsi.savnprksvreiigePlrhltsldeserkariaellelv.elrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkkl..kqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhpa 245
                 ++   v ++++l++++G tval G sG Gkst+ +ll  +  P+ G++   G dl+ l+    k +r+++ lv q+    a+     ++   g P     +++e++rka +++++    +  + ++    +qlsGGq qri+iaral ++P++i+ldea s ld    + + e l kl  ++e   ++++++h l+ +++ a+ ++vl +G ive+ k  el+s +h a
  MMETSP1061-20121228|352_1 628 TRTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLN---VKWLRKQIGLVSQEPKlFAISIADNIK--AGRPDATSDEVEEAARKANAHDFIMSFpDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLirEDEDNRTVVVVAHRLSTIKN-ADMIAVLSGGTIVETGKHKELIS-RHGA 850
                56677899************************************************9998...57899********96413454444444..58999999************9987665266677788999***********************************************943345678999*******9976.8*************998776654.5555 PP

  == domain 2    score: 102.4 bits;  conditional E-value: 9.2e-32
  TIGR02769   21 kqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhl..tsldeserkariaellelv.elrsevl.dklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhpagr 247 
                 +  +++++++++ +++Get+a++G sG Gkst+ +l+  + +P +G+++++G++++ l+ +    +r  + lv q+    v    s+r  i+  l++   +++++ +++a  ++++ +  +  + ++     +q+sGGq qri+iaral  +P+l++ldea s ld     ++ + l ++  +   +++ i+h l+ +++ ++r++vl++G++ e  +  el+++k    r
  MMETSP1061-20121228|352_1  915 RPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAW---LRNRMSLVAQEP---VLFDISIRDNIRFGLEDAtqEDIEKVAKEANCHDFIMEFpDAYDTIVgSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIRN-SDRIIVLNNGKVRESGTHDELMALKGHYHR 1138
                 557899****************************************************9875...677899999985...44566777777777776511578899999999987766514444444256789***************************************************************9865.9***********999988888887766655 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.0   2.4e-30   1.6e-28      12     203 ..     633     827 ..     619     830 .. 0.83
   2 !  109.1   0.0   6.5e-34   4.3e-32      10     206 .]     917    1115 ..     907    1115 .. 0.85

  Alignments for each domain:
  == domain 1    score: 97.4 bits;  conditional E-value: 2.4e-30
  TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekv.....glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkel...keegktiiivtHdpevaekadrv 203
                 + + l+lki++G +va++G sG GKst++ +l ++ ++  g+++l+g++     +  + k lr+++g + q+ +L    ++ +n++ +       + e+  +k ++ + +     g ++    +  +lsgG+kqR+++ar+l+ ++++il DE t++LD++++ +v e l++l    e+++t+++v H  +  ++ad +
  MMETSP1061-20121228|352_1 633 DVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDL----KDLNVKWLRKQIGLVSQEPKLFA-ISIADNIKAGRPDATSDEVEEAARKANAHDFImsfpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLireDEDNRTVVVVAHRLSTIKNADMI 827
                68999*********************************************3....45667899************995.79*******998877777766666666555442223344666677789************************************999888777762226789***********99999976 PP

  == domain 2    score: 109.1 bits;  conditional E-value: 6.5e-34
  TIGR03608   10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekv.gl.....ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelk.eegktiiivtHdpevaekadrviel 206 
                 +++i++ l++ ++kGe++aivG sG GKst++ ++ ++ ++d+g+++++g       +  +   lr++++ + q+  L +  ++++n++ +l+   ++  ek  k  ++ + + ++     +   +    ++sgG+kqR+a+ar+ll+++el+l DE t++LD++++ +v + l++++ ++ +ti+ + H  +  +++dr+i l
  MMETSP1061-20121228|352_1  917 EQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPM----TDLNVAWLRNRMSLVAQEPVLFD-ISIRDNIRFGLEDATQEDIEKVAKEANCHDFImEFpdaydTIVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITsNKHRTIVQIAHRLSTIRNSDRIIVL 1115
                 579************************************************94....45678899**********99998.68*********998887777766666655443122111112223566799********************************************98626789******************975 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0   2.1e-30   1.4e-28      19     223 ..     634     845 ..     617     852 .. 0.86
   2 !  108.7   0.0   1.2e-33   7.7e-32      18     222 ..     919    1129 ..     908    1133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 98.0 bits;  conditional E-value: 2.1e-30
  TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelv.....glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrkl.gvttimvthdqeealslaDrivvmnkgkieqvgtPeeiY 223
                + + ++l++k+g  v+l GPsG Gk+t+++++  + +++ G+ill+g d+ +l ++  +++ G+v q   Lf  + +a+ni+ G  +   ++ e a+r +++ + +     g ++      +qlsGGq+qr+++aral+ +P ++LLDe  saLD+   + ++e l kl r+  +  t++v   +   +  aD i+v+  g+i  +g  +e+ 
  MMETSP1061-20121228|352_1 634 VYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKwlRKQIGLVSQEPKLF-AISIADNIKAGRPDATSDEVEEAARKANAHDFImsfpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREDeDNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKELI 845
                567889*********************************************9998755799***********.59**********9999998888888888888764334344555566789********************************************99987641445555555567899******************998875 PP

  == domain 2    score: 108.7 bits;  conditional E-value: 1.2e-33
  TIGR03265   18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLe.lvglsgs.....eekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222 
                 ++++ +++ vkkge ++++GPsG Gk+t++++i  + ++d+G+i+ +g  +t+l ++  +    +v q  +Lf ++ +++ni +GL++  ++  e  ++ +++ + +++++++     ++   +q+sGGq+qr+a+aral   P+lLLLDe  saLD+     ++  l ++  +   t + ++h     +  +Dri+v+n+gk+   gt  e+
  MMETSP1061-20121228|352_1  919 QIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAwlRNRMSLVAQEPVLF-DISIRDNIRFGLEDATQEDIEKVAKEANCHDfIMEFPDAydtivGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRL-STIRNSDRIIVLNNGKVRESGTHDEL 1129
                 67788999********************************************998764245689*********.79**********99887666555555555551456766511111456689************************************999***********999999999976.57999*****************9886 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0     1e-32   6.6e-31      16     219 ..     630     835 ..     617     836 .. 0.87
   2 !   99.4   0.0   7.1e-31   4.7e-29      16     219 ..     916    1120 ..     903    1121 .. 0.86

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 1e-32
  TIGR02982  16 lrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmal..elkeklsakeakakaeelleav..gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklare..qgttillvthdnrildvadrivkmedGkl 219
                ++  v + +nl+i++g  v l GpsG Gk t++ l+  +     G++ + g++lk+++   ++ +r++iG++ q+  l+  +   +n++ +     +++++++++ka+a++++ +   g +  +    ++lsgGqkqr++iaral+a+P+++l de t+ald++s   v e l kl re   + t+++v+h    ++ ad i  +  G++
  MMETSP1061-20121228|352_1 630 TEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLN---VKWLRKQIGLVSQEPKLFA-ISIADNIKAGRpdATSDEVEEAARKANAHDFIMSFpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdeDNRTVVVVAHRLSTIKNADMIAVLSGGTI 835
                56678999*********************************************99876...5679*************97.567799*99862245667888888889999888764578889999**************************************************996225789******9999999999988887776 PP

  == domain 2    score: 99.4 bits;  conditional E-value: 7.1e-31
  TIGR02982   16 lrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmale..lkeklsakeakakaeelleavg.leerl..dykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219 
                  ++q+++ +++ +++ge + + GpsG Gk t++ li  + +   G++   g  ++++   ++  +r ++ ++ q+  l++ +  ++n+r++le   +e++++ +++a++++++ +     + +  +   +++sgGqkqr+aiaral   P+l+l de t+ald++s r v + l +++ ++  ti+ ++h    +  +dri+ +++Gk+
  MMETSP1061-20121228|352_1  916 PEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDL---NVAWLRNRMSLVAQEPVLFD-ISIRDNIRFGLEdaTQEDIEKVAKEANCHDFIMEFPdAYDTIvgSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIRNSDRIIVLNNGKV 1120
                 5689******************************************99999888765...57789***********9998.689*******983244557777777777887766531233332256789*************************************************************999999**********97 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   8.9e-29   5.9e-27      16     223 ..     638     848 ..     628     869 .. 0.86
   2 !  108.3   0.0   1.6e-33     1e-31      23     223 ..     931    1133 ..     922    1192 .. 0.84

  Alignments for each domain:
  == domain 1    score: 92.7 bits;  conditional E-value: 8.9e-29
  TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee.....rriseekvielL..giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerl..saelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223
                ++l++++   +al G sG Gk+++i+l+     p+ g i ldg+ l+d      +   ++++g v qe +LF+ +s+++n++ G+ +a+++e     r+++ +  i     g + ++  + ++LsGG kqR++i+RAl+++P+++l+De  +aLD+++   +   L++l  ++e +  ++ v+H l+ ++  ad + vl  G +  +gk +e+++++
  MMETSP1061-20121228|352_1 638 LNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDL----NVKWLRKQIGLVSQEPKLFA-ISIADNIKAGRPDATSDEveeaaRKANAHDFIMSFpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLirEDEDNRTVVVVAHRLSTIKN-ADMIAVLSGGTIVETGKHKELISRH 848
                57888898899*********************************99875....557889*************8.8*********9988776522222455544444433458999*******************************************99999999999333567889*********9976.9*******************99986 PP

  == domain 2    score: 108.3 bits;  conditional E-value: 1.6e-33
  TIGR02142   23 kgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee.rris.eek....vielL.giehLleR.lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223 
                  +  a+ G sG Gk+++i+li    rpd+g i   g  ++d      ++  + r++ v qe  LF  +s+r+n+r+Gl++a+ e+  ++  e++    ++e+  + + ++    ++++sGG kqR+ai+RAlL +PeLLl+De  +aLD+++ + +   L++++++ +  i+ ++H l+ +   +dr++vl++G+v+  g+ +e++a k
  MMETSP1061-20121228|352_1  931 GETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDL----NVAWLRNRMSLVAQEPVLFD-ISIRDNIRFGLEDATQEDiEKVAkEANchdfIMEFPdAYDTIVGSaATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIR-NSDRIIVLNNGKVRESGTHDELMALK 1133
                 4789*********************************99885....5688999************6.9***********99987623343133311125555434677776515789**************************************************************995.69********************9865 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.0   8.1e-31   5.3e-29       1     190 [.     650     846 ..     650     854 .. 0.86
   2 !  100.6   0.0   2.9e-31   1.9e-29       1     188 [.     936    1129 ..     936    1136 .. 0.83

  Alignments for each domain:
  == domain 1    score: 99.1 bits;  conditional E-value: 8.1e-31
  TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvt..evpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvq.....leefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqek..lGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiye 190
                l GpsG Gk+t+++ll  + ++  G+illdg+d+   +v   ++++++v q+  Lf  +++++n+  g      ++ e ++r  +a + +       +++   + sqlsGGq+qr+++ara++ kP+i+LlDe+ saLD +    +q+ l +l ++     tvv+v+h     +  +d iavl+ G i+  g+ +e+ +
  MMETSP1061-20121228|352_1 650 LCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKdlNVKWLRKQIGLVSQEPKLFA-ISIADNIKAGRPDATSDEVEEAARKANAHDFIMsfpdgYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdeDNRTVVVVAHRL-STIKNADMIAVLSGGTIVETGKHKELIS 846
                57********************************8224566799************6.9********99888888888888877777766422223577888999*********************************************99876511568999999965.689******************9999865 PP

  == domain 2    score: 100.6 bits;  conditional E-value: 2.9e-31
  TIGR01187    1 lLGpsGsGkttlLrllaGleeldsGkilldgedvt..evpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkea....Lelvqlee..fakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeei 188 
                 ++GpsG Gk+t+++l+  + ++d G i   g+ +t  +v+  +  + +v q+  Lf  +++ +n+ fgL    ++  e  ++  +     +e  +  +  +++   sq+sGGq+qr+a+ara+   P++LLlDe+ saLD +    +q  l ++  +   t+v ++h     +  sdri vl++Gk+   g+ +e+
  MMETSP1061-20121228|352_1  936 IVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTdlNVAWLRNRMSLVAQEPVLF-DISIRDNIRFGLEDATQEDIEKVAKEANChdfiMEFPDAYDtiVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRL-STIRNSDRIIVLNNGKVRESGTHDEL 1129
                 68*******************************9933466677789**********.59**********8655444443333333200012232222222688999*************************************************************76.5899**************99998887 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   2.7e-31   1.8e-29       2     203 ..     617     824 ..     616     832 .. 0.83
   2 !   97.8   0.0   2.2e-30   1.5e-28       2     213 ..     903    1118 ..     902    1119 .. 0.84

  Alignments for each domain:
  == domain 1    score: 100.8 bits;  conditional E-value: 2.7e-31
  TIGR02673   2 ielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvala.levrgkkeeeiqkrveevlelvgledkakal....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkel...nkrGttvivathdeelverv 203
                ie+++vs++y+  ++v++ + ++lki++g  + l G+sG Gk+t+++ll     p+ G++ ++g+d+++l+   +  lR++ig+v q+ kl+ + ++++n+       + ++ ee  ++ ++    + + d  +++     ++lsgG +qR++iaRa++ kP+++l De t  lD+e +  + + l +l    +   tv+v++h  + +++ 
  MMETSP1061-20121228|352_1 617 IEFKDVSFRYPtrTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLN---VKWLRKQIGLVSQEPKLF-AISIADNIKAGrPDATSDEVEEAARKANAHDFIMSFPDGYNTMvgdeGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLireDEDNRTVVVVAHRLSTIKNA 824
                79********955567899**********************************************998875...779*************97.5799***9654156666677777777777777777777666652222689*********************************987666555555411167789*******99988875 PP

  == domain 2    score: 97.8 bits;  conditional E-value: 2.2e-30
  TIGR02673    2 ielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkke.eeiqkrveevlelvgledkakal.....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnk.rGttvivathdeelvervkkrvlelekg 213 
                 i++ +v+++y+   + ++ + +++ ++kge l ++G+sG Gk+t+++l+ +  +p+rG++  +g  +++l   +++ lR ++++v q+  +l d ++ +n+ + le + +++ e++ k+ +     +++ d  +++     ++++sgG +qR+aiaRa++++Pelll De t  lD+e ++ + d l ++++ +  t++  +h  + +++ + r++ l++g
  MMETSP1061-20121228|352_1  903 ITFCDVNFKYPsrPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDL---NVAWLRNRMSLVAQEP-VLFDISIRDNIRFGLEDATQEDiEKVAKEANCHDFIMEFPDAYDTIvgsaaTSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSnKHRTIVQIAHRLSTIRN-SDRIIVLNNG 1118
                 88999*****95457899**********************************************887666...79************96.67799**********976655415556665555556677776654322222789*******************************************998651678999999*9999976.5688888887 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.2   2.6e-30   1.7e-28       9     219 ..     635     852 ..     628     884 .. 0.82
   2 !  101.6   0.1   1.6e-31   1.1e-29       9     244 ..     921    1166 ..     916    1202 .. 0.75

  Alignments for each domain:
  == domain 1    score: 97.6 bits;  conditional E-value: 2.6e-30
  TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenlell...gelyglpkkeaeeraeellelvelkea..adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke...gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkev 219
                 +g+nlk+++g+ ++l GP G GK+t+i++L     P+ G+  + G D+   + + +R++ig+v q+  +   ++  +n++     +   +++++++++ a++ +  +   +      +  ++sgG+++r+++a++lia+P+++ LDE t+ LD+++  ++ + +++l +e   + t+++ +h l  +   ad +a+++ G+i+ ++  +eL +r g+  
  MMETSP1061-20121228|352_1 635 YNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDlNVKWLRKQIGLVSQEPKLFA-ISIADNIKAGrpdATSDEVEEAARKANAHDFIMSFPDGYNtmVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdedNRTVVVVAHRLSTIK-NADMIAVLSGGTIVETGKHKELISRHGAYY 852
                579*********************************************97636779************9985.6777888763222555667777777778887777754443014456679*******************************************99976533478*********9986.59********************99887654 PP

  == domain 2    score: 101.6 bits;  conditional E-value: 1.6e-31
  TIGR01188    9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenlell...gelyglpkkeaeeraee.llelvelkea..adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelk.......kevsllaaeltes 244 
                  +g+++ v++ge ++++GP G GK+t+i+++    +Pd Gt +  G  ++  + + +R+++++v q+  +  d++ r+n+ +    +   +++k ++e+  ++ ++e+ + +++        + sgG+++r+ +a++l+ +Pe+l LDE t+ LD+++ r++ d ++++ ++   ti+  +h l  +   +dr++++++Gk+   +t +eL +  g+ + +   + +++l+       ++ +++aa++ es
  MMETSP1061-20121228|352_1  921 FQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDlNVAWLRNRMSLVAQEPVLF-DISIRDNIRFGledATQEDIEKVAKEANCHDfIMEFPDAYDTivGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNkHRTIVQIAHRLSTIR-NSDRIIVLNNGKVRESGTHDELMALKGHYH-R--LVHLQSLDddtdrnaHTDGMKAAQVSES 1166
                 5799*********************************************9747789**********98775.6889999986422255667777777777776245555555542245667899*********************************************99967899999****9986.59********************97444433.2..3333333311111112222222222222 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.0   1.1e-28   7.2e-27      16     210 ..     637     838 ..     617     841 .. 0.79
   2 !  104.0   0.0   2.6e-32   1.7e-30      16     209 ..     923    1122 ..     905    1126 .. 0.86

  Alignments for each domain:
  == domain 1    score: 92.2 bits;  conditional E-value: 1.1e-28
  TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdh..trsapyerpvsmlfqennlfahltvrqniglGlkpglkl...navqkekvedvarqv..GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkla..dekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                 ++l+++aG  va+ G+sG Gkst+++l+  f  p+ G+i +++ d   +++   ++ + ++ qe  lfa +++++ni  G   +      +a +k + +d   +   G + ++     +lsGGq+qr+++ar l+ +  i+llde  sald    + +   + kl   de ++t+++v+h+ls + + a+ ++v++ G i   
  MMETSP1061-20121228|352_1 637 GLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLkdLNVKWLRKQIGLVSQEPKLFA-ISIADNIKAGRPDATSDeveEAARKANAHDFIMSFpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIreDEDNRTVVVVAHRLSTI-KNADMIAVLSGGTIVET 838
                4799***************************************99861155667899************8.89*******9644433211135555566665555444777777778889********************************9766655555555542267889*********975.6799******9999765 PP

  == domain 2    score: 104.0 bits;  conditional E-value: 2.6e-32
  TIGR01277   16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdht..rsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqvGiadylerlpe............elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209 
                  +++ v++Ge +ai+G+sG Gkst+++li  f  p +G+i  +++ +t  ++a  +  +s++ qe  lf  +++r+ni +Gl+ +       +e +e+va++    d++  +p+            ++sGGq+qr+a+ar l+r+  +lllde  sald    + +   + +++++k++t++ ++h+ls ++   ++++v+++Gk++ 
  MMETSP1061-20121228|352_1  923 GLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTdlNVAWLRNRMSLVAQEPVLFD-ISIRDNIRFGLEDA------TQEDIEKVAKEANCHDFIMEFPDaydtivgsaatsQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIR-NSDRIIVLNNGKVRE 1122
                 46899***************************************98762256788999**********95.89********9864......5788888888888888887777533333334444479********************************9999999999******************9865.579*********986 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.6   0.0   1.5e-31   9.8e-30       7     228 ..     615     845 ..     610     853 .. 0.86
   2 !   94.0   0.0     3e-29     2e-27      23     227 ..     920    1129 ..     908    1137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 101.6 bits;  conditional E-value: 1.5e-31
  TIGR03258   7 sGvvleslrvaygarv...vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlpp..ykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklv.qlsdaaarl....paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrel.peltvlyvthdrdealvladkillmkeGslialGetraly 228
                + + +++++ +y +r+   v + l l+i+aG  +al G+sG Gk+t+++++  f  +  G +l+ ++dl  l     +++++l+ q+  lf  + + +n+  G       + + a r a+a   +  + d  + +     +qlsGGq+qr+++aral+ +p+++llde  sald++    v+e l +l re   + tv++v+h r  ++  ad i ++  G++++ G+ ++l 
  MMETSP1061-20121228|352_1 615 GDIEFKDVSFRYPTRTevdVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVkwLRKQIGLVSQEPKLFA-ISIADNIKAGRPDATSDEVEEAARKANAHDFImSFPDGYNTMvgdeGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREDeDNRTVVVVAH-RLSTIKNADMIAVLSGGTIVETGKHKELI 845
                66888899999999985557789**********************************************98765216899***********6.89********99999999999999999998762455533332122268********************************************999877516788888888.678999******************99986 PP

  == domain 2    score: 94.0 bits;  conditional E-value: 3e-29
  TIGR03258   23 vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlp.pykrn.lallvqnyalfphlkveenvafGlrarkqskaliaervadal.klvqlsda.....aarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetral 227 
                 +++ l + ++ Ge la++G+sG Gk+t+++++  f ++d G++   +  +t l   + rn ++l+ q+  lf  + + +n+ fGl    q + +   + a+    ++++ da     ++   +q+sGGq+qr+a+aral  +p++lllde  sald++    v++ l ++  +  + t++ ++h r  ++  +d+i ++++G++ + G+  +l
  MMETSP1061-20121228|352_1  920 IFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNvAWLRNrMSLVAQEPVLF-DISIRDNIRFGLEDATQEDIEKVAKEANCHdFIMEFPDAydtivGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSN-KHRTIVQIAH-RLSTIRNSDRIIVLNNGKVRESGTHDEL 1129
                 67889999************************************9999999876234454389999999999.599*********97776655444444444414567777523233566789*****************************************999999876.578******9.6678999****************98877 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   2.4e-30   1.6e-28      15     219 ..     629     835 ..     617     837 .. 0.84
   2 !   93.7   0.0   3.8e-29   2.5e-27      17     220 ..     917    1121 ..     903    1122 .. 0.84

  Alignments for each domain:
  == domain 1    score: 97.6 bits;  conditional E-value: 2.4e-30
  TIGR02211  15 kleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvam..Plliskkskkea..kerakellekv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnk..ekntallvvthdlelakkldrvlelkdgkl 219
                ++e++v++g++l+i++g +va+ G sG Gkst++ ll  + +pt G++ll+G +l+ l+ +    lr k++G++ q   l+a  ++ +n+    P   s+ +++ea  k +a++++  +  g +  +  + s+lsGG++qr++iaral+ kP+++l de t+ ld+++  ++ e l +l +  e n +++vv+h l+ +k++d    l+ g++
  MMETSP1061-20121228|352_1 629 RTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVK---WLR-KQIGLVSQEPKLFA-ISIADNIKAgrPDATSD-EVEEAarKANAHDFIMSFpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIRedEDNRTVVVVAHRLSTIKNADMIAVLSGGTI 835
                5789****************************************************99754...455.78******998875.899****8633555554.3444401445666777664478889999*************************************************9761156889*************999988888876 PP

  == domain 2    score: 93.7 bits;  conditional E-value: 3.8e-29
  TIGR02211   17 eievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskks.kkeakera..kellekv.glekri..nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220 
                 e ++++g+++ ++kge++aivG sG Gkst++ l+  + +p  G+++ +G  ++ l+    a lrn+ + ++ q   +l d ++ +n+ + l  + ++ +++ +++a  ++++ ++ +  + i  +  +s++sGG++qr+aiaral+ +P+l+l de t+ ld+++ + + + l ++ ++k+ +++ ++h l+ +++ dr + l++gk++
  MMETSP1061-20121228|352_1  917 EQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLN---VAWLRNR-MSLVAQ-EPVLFDISIRDNIRFGLEDATQEdIEKVAKEAncHDFIMEFpDAYDTIvgSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIRNSDRIIVLNNGKVR 1121
                 679************************************************998875...799**97.789999.56889*********99865544313333333311344444424445552345789*****************************************************************************986 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   8.8e-30   5.8e-28       2     204 ..     617     824 ..     616     835 .. 0.79
   2 !   95.3   0.0   1.4e-29   9.4e-28       1     215 [.     902    1119 ..     902    1120 .. 0.82

  Alignments for each domain:
  == domain 1    score: 95.9 bits;  conditional E-value: 8.8e-30
  TIGR00960   2 ikfeqvskaykgaael.aldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiG.vkgreieervsaalekv.....GlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleev...nraGttvlvathdenlvesk 204
                i+f++vs +y++ +e+   +++++ki+ G  v l G+sG Gkst+++l+     p+ G i++ g dl   +d +v  lr+qiG+v q+ kl+   ++ dn+      +   + +e+ ++++a  + +     G +    +   qlsgG++qr++iara++ kP ++l de t+ ld+e    + e l+++   ++   tv+v +h  + +++ 
  MMETSP1061-20121228|352_1 617 IEFKDVSFRYPTRTEVdVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDL---KDLNVKWLRKQIGLVSQEPKLFA-ISIADNIKAGRPDATsDEVEEAARKANA-HDFImsfpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLireDEDNRTVVVVAHRLSTIKNA 824
                89*********9988625689*******************************************986...566899**************875.6789999766543330333333333333.22222223488888889999**********************************987766666666511156679*******98888765 PP

  == domain 2    score: 95.3 bits;  conditional E-value: 1.4e-29
  TIGR00960    1 mikfeqvskaykga.aelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalek.vGlk..d...k..akalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnr.aGttvlvathdenlveskrkrvltlskGk 215 
                 +i+f +v  +y++  ++  ++++++ ++kGe   +vG+sG Gkst+++li +  +p +G i + g ++t l   +v+ lr+++ +v q+  +l d ++ dn+ + l+ +    ++ie+++++a  +   ++  d        a   q+sgG++qr+aiara++++P+lll de t+ ld+e  r + + l+++   +  t++  +h  + +  ++ r+++l++Gk
  MMETSP1061-20121228|352_1  902 LITFCDVNFKYPSRpEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDL---NVAWLRNRMSLVAQEP-VLFDISIRDNIRFGLEDAT--QEDIEKVAKEANCHdFIMEfpDaydTivGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSnKHRTIVQIAHRLSTIR-NSDRIIVLNNGK 1119
                 59999******996356789***********************************************9977...69************85.789************9664..5666666665532202222112100111345678*********************************************997515568888889888886.578999999998 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.9   0.0   3.8e-30   2.5e-28      12     219 ..     631     844 ..     617     850 .. 0.84
   2 !   91.5   0.0   1.7e-28   1.2e-26      12     219 ..     917    1129 ..     904    1136 .. 0.86

  Alignments for each domain:
  == domain 1    score: 96.9 bits;  conditional E-value: 3.8e-30
  TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk......ekkipeeiyelFPv.lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelake..kdlaillveqvldfaleladrylvlerGevvaegekeel 219
                e  v ++++l++++g +va+ G  g Gk+t+++ l   ++ + G+i l+g+d+++l+ +   ++ i+ v+q  ++f+ +++++n++ g   ++++      +k+  ++    FP   ++m   +g +LsGGq+q ++iaRaL+++P+++lLDe t  +       +++++++l +e  ++ ++++v + l+  ++ ad ++vl+ G++v++g+++el
  MMETSP1061-20121228|352_1 631 EVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVK-WLRKQIGLVSQEPKLFA-ISIADNIKAGRPDATSDeveeaaRKANAHDFIMSFPDgYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdeDNRTVVVVAHRLSTIKN-ADMIAVLSGGTIVETGKHKEL 844
                456889************************************************99865.67899*********996.8********9865544334444333344555667885378999*************************************988777788889888654226789*******997766.****************99886 PP

  == domain 2    score: 91.5 bits;  conditional E-value: 1.7e-28
  TIGR03410   12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk......ekkipeeiyelFPvlkeml..kRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219 
                 e ++++++++ v+kge++a++G  g Gk+t+++ +   ++  +G+i ++g  +t+l+     ++ ++ v q   +f ++++++n++ gle ++++      +++  ++    FP   +    +  + ++sGGq+q +aiaRaL+ +P+lllLDe t  +     + +++++++++++k+ +i+ + + l+  ++ +dr++vl++G+v ++g+++el
  MMETSP1061-20121228|352_1  917 EQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVA-WLRNRMSLVAQEPVLF-DISIRDNIRFGLEDATQEdiekvaKEANCHDFIMEFPDAYDTIvgSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIRN-SDRIIVLNNGKVRESGTHDEL 1129
                 579***************************************************99865.57888******76555.89**********988877665444222233445568866654411456689**************************************************************8887.9***************99986 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.8   0.0   3.7e-30   2.4e-28       2     235 ..     618     845 ..     617     850 .. 0.81
   2 !   86.3   0.1   6.1e-27   4.1e-25      14     235 ..     919    1130 ..     907    1142 .. 0.83

  Alignments for each domain:
  == domain 1    score: 96.8 bits;  conditional E-value: 3.7e-30
  TIGR03005   2 risdvtkrf...geltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvtea.pvlv.kGvaraeaekravelldmv..GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrla..setdltmllvthemgfarefadrvlffdkGkiveeGkpdeif 235
                +++dv+ r+    e+ v +gl+l+++aG  val GpsG Gksti+++l  +     Gsi ++g  l  ++             ++ +r++iG+v q+  lf   ++ dn+    p  +   v+ a+ ++ a +++     G         +qlsGGqkqr++iaral  +p+++l+de+tsald e    v + l +l    e + t+++v+h++   ++ ad +  +  G ive Gk +e+ 
  MMETSP1061-20121228|352_1 618 EFKDVSFRYptrTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLN-------------VKWLRKQIGLVSQEPKLFAI-SIADNIKAGrPDATsDEVEEAARKANAHDFIMSFpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIreDEDNRTVVVVAHRLSTIKN-ADMIAVLSGGTIVETGKHKELI 845
                6777777773334678999*****************************99999999*****998887766.............7789**************85.7889997642544414566666666666665433337777777889**********************************9965555555555551156789*********98876.9****************99986 PP

  == domain 2    score: 86.3 bits;  conditional E-value: 6.1e-27
  TIGR03005   14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvt..eapvlv....kGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeif 235 
                 ++++gle+ v++Ge +a++GpsG Gkst+++++  + + d G+i       yh        vp  +  ++ +r+++ +v q+  lf   ++ dn+   +         k  + a+ ++  +e+ d         a  +q+sGGqkqr+aiaral   p +ll+de+tsald e    v + l +++s+++ t++ ++h++   r+ +dr++ +++Gk+ e G  de++
  MMETSP1061-20121228|352_1  919 QIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIF------YHG-------VPMTDLNVAWLRNRMSLVAQEPVLFD-ISIRDNIRfgLEDATQedieKVAKEANCHDFIMEFPDAYDTIV-GSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIRN-SDRIIVLNNGKVRESGTHDELM 1130
                 6899****************************9999999999875......554.......3666778999***********99996.4666776422222233001134456677777777777654333.356689************************************9999***********************9997.9******************986 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.0   8.5e-30   5.6e-28      16     231 ..     630     847 ..     617     854 .. 0.83
   2 !   89.7   0.0   5.8e-28   3.9e-26      20     230 ..     920    1131 ..     909    1140 .. 0.83

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 8.5e-30
  TIGR02314  16 kkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalp.lelentpkekikrkvtellalvglsdkkdsy....psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrr..lgltillithemdvvkricdevavidkgeliekgtvseifsh 231
                 +++  + ++l + +g+ + + g sg gkst+i+ ++ +  pt g++++dg+dl  l+   +   r+qig++ q   l++  ++ +n+     +  +   e+  rk +    ++ + d  ++      s+lsggqkqr++iaral ++p+++l deatsald  +   + e l ++ r+   + t+++++h +  +k+  d++av+++g ++e g   e++s+
  MMETSP1061-20121228|352_1 630 TEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLN---VKWLRKQIGLVSQEPKLFAI-SIADNIKAGrPDATSDEVEEAARKANAHDFIMSFPDGYNTMvgdeGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdeDNRTVVVVAHRLSTIKN-ADMIAVLSGGTIVETGKHKELISR 847
                46788999*******************************************9987775...556699********999875.677888654045555556777788877666666666555442222799*********************************999999999988887522689************98.7***************99998875 PP

  == domain 2    score: 89.7 bits;  conditional E-value: 5.8e-28
  TIGR02314   20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsy........psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifs 230 
                  ++ +++ v kg+ + ++g sg gkst+i+ ++ + +p  g+++  g+ +t l+ a l   r ++ ++ q   l    ++ +n+ + le +  ++e+i++  +e  +   + +  d+y         s++sggqkqr+aiaral  +p +ll deatsald  + + + + l +i  +   ti+ i+h +  +++  d++ v+++g++ e gt  e+++
  MMETSP1061-20121228|352_1  920 IFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWL---RNRMSLVAQEPVL-FDISIRDNIRFGLEDA--TQEDIEKVAKEANCHDFIMEFPDAYdtivgsaaTSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIRN-SDRIIVLNNGKVRESGTHDELMA 1131
                 56678899********************************************987665...7788999998655.567899***9988755..5555555555555544444444444222332226899*************************************************************9965.8****************998875 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   2.9e-30   1.9e-28      14     227 ..     632     847 ..     616     852 .. 0.87
   2 !   81.1   0.0   2.4e-25   1.6e-23      14     225 ..     918    1130 ..     911    1134 .. 0.87

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 2.9e-30
  TIGR03873  14 rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralar.velssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela...aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltp 227
                + + ++++++  aG+  +l GP G Gkst+++ll     p+ G++ l+g+dlk l+ +   +++ lv q+ +    +s+ d +  Gr    s    +++  a++ d +++   + +++   + s lsGG++qr+ +aral  +P+++llde t  ld ++ + + +++ +l+   +++ tvvv  h l+  ++ +d + vl+gG +v +G+ +e++ +
  MMETSP1061-20121228|352_1 632 VDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPK-LFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFpDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIredEDNRTVVVVAHRLST-IKNADMIAVLSGGTIVETGKHKELISR 847
                4466799999***********************************************************965.688***********999999999999999999988886246889999999**********************************8887777766666665557888999999***96.6789****************9988765 PP

  == domain 2    score: 81.1 bits;  conditional E-value: 2.4e-25
  TIGR03873   14 rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvel..ssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegv.tvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevl 225 
                 + i +++++ + +G+  +++GP G Gkst+++l+    +pd+G++ + g+ ++ l+      r++lv q+     ++s+rd + +G          + +++a+  d ++   ++  + + + ++s +sGG++qr+ +aral ++P+llllde t  ld ++   +  ++ ++++++  t+v   h l+ +++ +d+++vl++G+v  +G+  e++
  MMETSP1061-20121228|352_1  918 QQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEP-VLFDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAydTIVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHrTIVQIAHRLS-TIRNSDRIIVLNNGKVRESGTHDELM 1130
                 67899999999********************************************99999999****9985.6799**********9988888777788888888887776555115567888999************************************99999999998666515555667776.6899****************987765 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.3   0.0   1.4e-27   9.4e-26       4     186 ..     631     817 ..     626     821 .. 0.85
   2 !   81.0   0.0   2.5e-25   1.6e-23       4     185 ..     917    1101 ..     912    1105 .. 0.82

  Alignments for each domain:
  == domain 1    score: 88.3 bits;  conditional E-value: 1.4e-27
  TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdi..sglee...rpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklr...eeGktvvisthd 186
                e++v +glnl+++ g+++al G+ G Gkst+++ l+    P+ G +lldG++l+    ++  lrk+++lv q+p  +lfa ++ +++  g  +   +e e  +r  +a + +    +g++       ++lsgG+k+r++ia a++ +p+++llde t+ ld++ +  + e+l+kl    e+ +tvv+ +h 
  MMETSP1061-20121228|352_1 631 EVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLK--DLNVKWLRKQIGLVSQEP--KLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSfpDGYNTmvgDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIredEDNRTVVVVAHR 817
                67899*********************************************9986..4567778*********99..6*************999888887777788888776632234555411156789********************************************995222456789999885 PP

  == domain 2    score: 81.0 bits;  conditional E-value: 2.5e-25
  TIGR01166    4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgl........eerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeG.ktvvisth 185 
                 e ++++gl++ v++ge+la++G+ G Gkst+++ ++   rP  G++ ++G ++     ++  lr++++lv q+p   lf  ++ +++ fg+ +    ++++e++ +ea     i ++         + +t+++sgG+k+r+aia a+   p++lllde t+ ld++ ++ + ++l++++ +  +t+v  +h
  MMETSP1061-20121228|352_1  917 EQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMT--DLNVAWLRNRMSLVAQEP--VLFDISIRDNIRFGLEDAT--QEDIEKVAKEANCHDFIMEFpdaydtivGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKhRTIVQIAH 1101
                 45789*********************************************9985..5567888999******99..6**************9865..555666666665433333321111111146789************************************************9765156665555 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0     1e-23   6.9e-22       3     197 ..     637     839 ..     635     855 .. 0.80
   2 !   91.9   0.0   1.5e-28   9.7e-27       2     196 ..     922    1123 ..     921    1137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 76.0 bits;  conditional E-value: 1e-23
  TIGR01184   3 dvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrm.....vvfqnysllpwltvrenialav.davlrdlskserreiveehielv..glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkivee..arvtvlmvthdvdealllsdrvvmltngpaakig 197
                +++l+ik g  ++l g sg gkst+++l+  +  pt g++ l+g ++++   + +     +v q+  l+   ++ +ni     da   +++++ r++  ++ i     g ++    + +qlsgg kqr++iaral  +p+++llde   ald+ +   +qe l k+++e  ++ tv++v+h +  ++  +d + +l+ g   + g
  MMETSP1061-20121228|352_1 637 GLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLrkqigLVSQEPKLFA-ISIADNIKAGRpDATSDEVEEAARKANAHDFIMSFpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdeDNRTVVVVAHRLS-TIKNADMIAVLSGGTIVETG 839
                789*****************************************99988765433222236778877776.67889998766144555555556666555555443347888889999*******************************************99998754115789******986.56778888888888766666 PP

  == domain 2    score: 91.9 bits;  conditional E-value: 1.5e-28
  TIGR01184    2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepg....pdrmvvfqnysllpwltvrenialavdav.lrdlskserreiveehi.elvgl..reaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaaki 196 
                 +++++ +kkge ++++g sg gkst+++li  + +p  g++  +g  +t+       +rm +  +  +l   ++r+ni + ++ + ++d++k  +++  ++ i e+ +   +      ++q+sgg kqr+aiaral   p+llllde   ald+ +   +q+ l +i+ +++ t++ ++h +  ++  sdr+++l ng   + 
  MMETSP1061-20121228|352_1  922 QGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNvawlRNRMSLVAQEPVLFDISIRDNIRFGLEDAtQEDIEKVAKEANCHDFImEFPDAydTIVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLS-TIRNSDRIIVLNNGKVRES 1123
                 578999****************************************999865223369**988888888899********9976515678888888877776513333311233456789*************************************************************96.6889**********86655 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   2.6e-26   1.7e-24       3     216 ..     636     847 ..     634     858 .. 0.84
   2 !   74.9   0.0     2e-23   1.3e-21       3     215 ..     922    1131 ..     920    1143 .. 0.83

  Alignments for each domain:
  == domain 1    score: 84.3 bits;  conditional E-value: 2.6e-26
  TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrs.afnPlltikeqlletlk..aleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrek..rglgillithDlgvvaeladevavmekGkivergtvkelfqe 216
                +++nl++k g  +al G sG Gks+    i++ll+     t G+illdg +l++l  +   ++i+l+ q+P+  a     +i+++++      +  ++++ a++  ++ +  +  +  ++++     +lsGG  qR+ ia al++++ +++ De t++lD  +++ v + l++l ++  ++ ++++++h l+ +   ad +av++ G ive+g+ kel+++
  MMETSP1061-20121228|352_1 636 NGLNLKIKAGTTVALCGPSGGGKST----IIQLLERFYDPTYGSILLDGTDLKDLnvKWLRKQIGLVSQEPKLfA----ISIADNIKAGRPdaTSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdeDNRTVVVVAHRLSTIK-NADMIAVLSGGTIVETGKHKELISR 847
                589********************96....67888888889************9995556689*********8513....445555554443003445557777777888887777778899999*************************************************9754115689*********995.69******************99875 PP

  == domain 2    score: 74.9 bits;  conditional E-value: 2e-23
  TIGR02770    3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPlltikeqlletlkal..eklskqakelivealeavgLeeaeevlkk.ypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215 
                 q++++ +k+g+ la+vG sG Gks++ + i ++        +G i  +g ++++l  a   ++++l+ q+P+  f+   +i+++++  l+ +  e ++k ake   + +     +  ++++ +    ++sGG  qR+ ia all ++ ll+ De t++lD  ++  v + l+++++++  +i+ i+h l+ + +  d ++v+++Gk+ e+gt +el+ 
  MMETSP1061-20121228|352_1  922 QGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYR----PDRGTIFYHGVPMTDLnvAWLRNRMSLVAQEPVL-FD--ISIRDNIRFGLEDAtqEDIEKVAKEANCHDFIMEFPDAYDTIVGSaATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTI-RNSDRIIVLNNGKVRESGTHDELMA 1131
                 7899********************98777666666....679**********99855667889********85.43..56666666666554004455777777777766555555667776515689**************************************************************99.568****************999876 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   2.4e-21   1.6e-19      46     255 ..     640     845 ..     616     852 .. 0.85
   2 !   88.7   0.0   1.1e-27   7.4e-26      34     255 ..     914    1130 ..     889    1137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 2.4e-21
  TIGR00955  46 GvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekv...eakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqk...gktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                 ++k G+ +A+ G+SG GK+T+++ l        ++ g++ll+G+ +   + k +r+  + v q+  ++  +++ +++        ++++ +  +++  ++ +  ++  +  +t++g++g    lSgG+++R+++a  l+ +P ++++DE Ts LDs s   v ++L kl ++    +tv+++ H  s    ++ d i +l+ G +v +G+ +e++
  MMETSP1061-20121228|352_1 640 LKIKAGTTVALCGPSGGGKSTIIQLLERFYDP--TY-GSILLDGTDLkdlNVKWLRKQIGLVSQEPKLF-AISIADNIKAGRPDATSDEVEEAARKANAHDFI--MSFPDGYNTMVGDEGS--QLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdedNRTVVVVAHRLST--IKNADMIAVLSGGTIVETGKHKELI 845
                5789********************99766544..44.57*****87521167889999****9976444.57888999888888888889999999999**99..7889********9996..9**********************************************86522279*******9875..7999***************998875 PP

  == domain 2    score: 88.7 bits;  conditional E-value: 1.1e-27
  TIGR00955   34 kkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekvea...kemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkg.ktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255 
                 ++pe+++ ++    +k+Ge lA++G+SG GK+T ++ + +  + +  +   +   G +++      +r++ + v q+ +++  +++r+++ f  +   ++++ k  k++  ++ +   +  ++ dt++g++  +  +SgG+++R+a+a  ll dP lL++DE Ts LDs s   v  +L +++++  +t++   H  s +  ++ d+ii+l++G+v  +G+ +e++
  MMETSP1061-20121228|352_1  914 SRPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGT---IFYHGVPMTDlnvAWLRNRMSLVAQEPVLFD-ISIRDNIRFGLEDATQEDIEKVAKEANCHDFIM--EFPDAYDTIVGSAA-TSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKhRTIVQIAHRLS-T-IRNSDRIIVLNNGKVRESGTHDELM 1130
                 4599999999999**************************999998655...88899887641116789********999885.8******************************95..678********777.699***********************************999999****97665055555556654.4.5788***********9999988876 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   1.8e-23   1.2e-21      13     230 ..     632     842 ..     622     851 .. 0.81
   2 !   75.4   0.0   1.5e-23   9.9e-22      12     231 ..     917    1128 ..     908    1138 .. 0.82

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 1.8e-23
  TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneG..fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree...ekalliithyerllelikPdvvhvlldGrivksGdve 230
                 ++ +glnl++k+G+++a+ Gp G Gkst+ + l   + y  t G+i l+g+dl +l+v+   r+ + l  q p+ +  +s+++ +++    +++ + ee       +++ +++  +++++  + +   +eG   sGG k+r  i + ++ +P++++LDe+ s lD ++  iv e ++kl +e   ++++++++h  rl    + d++ vl  G+iv++G+ +
  MMETSP1061-20121228|352_1 632 VDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLE--RFYDPTYGSILLDGTDLKDLNVKW-LRKQIGLVSQEPK-LFAISIADNIKAGRPDATSDEVEE------AARKANAHDFIMSFPDGYNTMVGDEGsqLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdedNRTVVVVAH--RLSTIKNADMIAVLSGGTIVETGKHK 842
                67899***************************995..678899****************85.5677888999997.556999888888776666333333......33444444555566666666555565448*******************************************99766444667777777..56666689***************863 PP

  == domain 2    score: 75.4 bits;  conditional E-value: 1.5e-23
  TIGR01978   12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdvel 231 
                 +++i +gl++ vkkGe+ ai+Gp G+Gkst+ + +   + y+  +G+i ++g  +++l+v    r+ + l  q p+    +s+++ +r  l+ +++++ e+  + ++ ++ + e  ++++   +++     +  sGG k+r  i + +l +P+l +LDe+ s lD ++ ++v + ++++ ++ +++++ i+h  rl    + d + vl +G++ +sG  + 
  MMETSP1061-20121228|352_1  917 EQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIE--QFYRPDRGTIFYHGVPMTDLNVAW-LRNRMSLVAQEPVL-FDISIRDNIRFGLEDATQEDIEKVAKEANCHDFIMEFPDAYD---TIVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNkHRTIVQIAH--RLSTIRNSDRIIVLNNGKVRESGTHDE 1128
                 789******************************995..679999***************975.577789999**984.568899999988888876555555444444444444444433...44555556678********************************************99885677777887..67777789***************8764 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.2   1.5e+02     960    1078 ..     322     443 ..     313     454 .. 0.68
   2 !   73.2   0.0   2.8e-23   1.9e-21    1215    1429 ..     614     835 ..     578     861 .. 0.85
   3 !   69.9   0.0   2.8e-22   1.9e-20     441     653 ..     920    1147 ..     905    1194 .. 0.82
   4 ?    0.4   0.1      0.26        17     924    1031 ..    1275    1383 ..    1269    1431 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.2
  TIGR01271  960 lhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiav...vsvlqpyilvaaipvavifi..vlrayflrtsqqlkqlesearspifshliislkglwtvr 1078
                 ++++ + ++l+  ma ++ + + +    +s +   +   l   l d +q+++  +g +a     s+   ++l+a +pv+ +    vl++   +t++   +  ++a s ++s  + s++ + ++ 
  MMETSP1061-20121228|352_1  322 MKQEWFDALLRQDMAYYDIMDTSGTATIISTNGRKFKRGLGRKLGDGVQFTITAIGGLAFgfwCSLKLSFLLLAIVPVMAVVTglVLKLNQTKTARA-NESYAKAGSIVYS-SVSSIRTILSLN 443 
                 5566677888888888888888888888888888888888889999999999999988642227888899999999997666500444444444332.2233344444444.456666665555 PP

  == domain 2    score: 73.2 bits;  conditional E-value: 2.8e-23
  TIGR01271 1215 ggqmtvkdltaky.teagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpy.eqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiir....ktlkqafsnctvilsehrveallecqqflviegssv 1429
                  g+++ kd++ +y t +   v + l + ++ag +v l g +g gkst++  l r+ + t g i +dg   + + ++  rk +g++ q   +++ ++  n+       + +e+   a +   +  i  fpd  + ++ d g  ls g kq + +ar++++k +i+llde ++ ld  +  i++    k +++   n tv++  hr+ ++ + + + v+ g ++
  MMETSP1061-20121228|352_1  614 VGDIEFKDVSFRYpTRTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDpTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAGrPDATSDEVEEAARKANAHDFIMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQealdKLIREDEDNRTVVVVAHRLSTIKNADMIAVLSGGTI 835 
                 588899999999955667789*********************************986499***************************88888888888887541455667899*************************************************************8666665500005556677899**********9999888888777665 PP

  == domain 3    score: 69.9 bits;  conditional E-value: 2.8e-22
  TIGR01271  441 vlknislklekgqllavagstgsgkssllmmilgelepsegkikhsg.............risfspqvswimpgtikdniifglsydey.rytsvikacqleediallaekdktvlgeg.gitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilv..tsklehlkkadkilllhegscyfygtfselqakkpdfsskllgleafds 653 
                 +++ +++ ++kg+ la+ g +g gks+++ +i     p  g i + g             r+s  +q + ++  +i+dni fgl          v k  +  + i  +++  +t++g      +sggq+ ri++ara+ +d +l lld   s ld  +e+ + +  l  + +nk r +v  + +l  ++++d+i++l +g+    gt  el a k  +  +l+ l++ d+
  MMETSP1061-20121228|352_1  920 IFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGvpmtdlnvawlrnRMSLVAQEPVLFDISIRDNIRFGLEDATQeDIEKVAKEANCHDFIMEFPDAYDTIVGSAaTSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESER-VVQDALDNITSNKHRTIVqiAHRLSTIRNSDRIIVLNNGKVRESGTHDELMALKGHYH-RLVHLQSLDD 1147
                 566788999*********************************9876655555555556559999********************86544157889999***********987777766515679*******************************99997.667899*******9988633689******************************99885.5666666665 PP

  == domain 4    score: 0.4 bits;  conditional E-value: 0.26
  TIGR01271  924 ayyilyiyvgvadsllalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdli.qlllivlgaiavvsvlqpyilvaa 1031
                 ++ i yiy+g+  + l    l    +  +   + kr+ +  ++ +++  +a ++t     i  ++s d a+i  +    +  l+ +l  +++g ++    + p+ lva 
  MMETSP1061-20121228|352_1 1275 SFQISYIYIGLMVAALVGNTLVFYGFGTATERMNKRVRDASFKNLMRQEVAYFDTRAVSAITSQLSDDAAMIHSFSGEPIRTLVmNLASVLVGLVVSFVYMWPFALVAL 1383
                 6789999999876666544333333444555678999999999********************************9999988763678888999999999****99984 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       5.2   3.4e+02     104     166 ..     225     292 ..     218     310 .. 0.69
   2 !   73.3   0.0   7.4e-23   4.9e-21       4     207 ..     620     840 ..     617     848 .. 0.76
   3 !   68.0   0.0   2.9e-21   1.9e-19      12     210 ..     917    1128 ..     910    1141 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 5.2
  TIGR03740 104 rieevlk.ivdlentekkkakqfslGmkqrlGiaiallnkPkllil..d...ePtnGldPlGiqelrel 166
                ++e+ l  ++++ +  k +  +f l m     +   l++ P + i+  d   + +nG d  Gi++l  +
  MMETSP1061-20121228|352_1 225 KVEDPLAtVMEVLSFAKTRRAKFNLAMGLAASVMSGLIQ-PAIAIVfsDsftNFSNGSDQNGIRNLALI 292
                555544404467777888889999999888888777775.55544323311134689999999998765 PP

  == domain 2    score: 73.3 bits;  conditional E-value: 7.4e-23
  TIGR03740   4 knlskkfkkqa...vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrew...trkdl.kkiGsliesPalyenltarenlkv...rtlllglpesr.....ieevlkivdlent.ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldP...lGiqe.lreliksfpekGitvilsshilsevelladhiGiiseGklkyekk 207
                k++s ++  ++   v n ++lk+k  +  +l Gp G Gkst+++ll  +  +t G+illdg ++   + k l k+iG + ++P l+  ++  +n+k     ++  +++e+       + +++  d  nt    + +q+s G kqr+ ia al+ kP++++lde t  ld    + +qe l +li+   e+  tv++ +h ls +++ ad+i ++s G++   +k
  MMETSP1061-20121228|352_1 620 KDVSFRYPTRTevdVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLkdlNVKWLrKQIGLVSQEPKLFA-ISIADNIKAgrpDATSDEVEEAArkanaHDFIMSFPDGYNTmVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSeseVIVQEaLDKLIRE-DEDNRTVVVVAHRLSTIKN-ADMIAVLSGGTIVETGK 840
                566666655541116689*******************************************87611145555347999999999995.89999*997433467777765431111123455665555541567889*********************************73334466647888887.5667899999*******86.9*********9976665 PP

  == domain 3    score: 68.0 bits;  conditional E-value: 2.9e-21
  TIGR03740   12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkd...lkkiGsliesPalyenltarenlkvrtlllglpesrieevlk..........ivdlent..ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpe.kGitvilsshilsevelladhiGiiseGklkyekkidk 210 
                 +q++ + +++ vkk +  +++Gp G Gkst+++l+  + r++ G i ++g ++t  +   l++  sl+ + ++  +++ r+n++    l++  ++ ie+v k            d  +t  +   ++q s G kqr+ ia all++P+ll+lde t  ld    + +++ +  +++ k  t++  +h ls +++ +d i ++++Gk++  +  d+
  MMETSP1061-20121228|352_1  917 EQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNvawLRNRMSLVAQEPVLFDISIRDNIRFG--LEDATQEDIEKVAKeanchdfimeFPDAYDTivGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSnKHRTIVQIAHRLSTIRN-SDRIIVLNNGKVRESGTHDE 1128
                 6999**********************************************9998654223889999*999999999******9864..344444444444440000011000334433322567789**********************************998888888887765156788889*******87.89*********998777665 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   3.1e-21   2.1e-19      19     198 ..     630     804 ..     620     830 .. 0.75
   2 !   67.7   0.0   3.2e-21   2.1e-19      22     213 ..     919    1108 ..     914    1117 .. 0.77

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 3.1e-21
  TIGR02324  19 vklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWsl...aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakar 198
                ++++v + ++l+++aG  val G+sG Gkst+++ l + Y p  g+il+      +    +++ +v  +R k+ig vsq  +      a ++ a    ++  e eea+ ka++    +  p+   ++     +  sGG kqR+ iaralia+  i+LLde t++Ld+    +v e ++++ ++
  MMETSP1061-20121228|352_1 630 TEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDG----T---DLKDLNVKWLR-KQIGLVSQEPKLFAISIADNIKAGRPDATSDEVEEAARKANAHDFIMSFPDGYNTMvgdEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIRE 804
                5788999****************************************9876....3...44566777788.89******9876665555556555444555566666666666666666676655551115789*****************777899*********99998888866554332 PP

  == domain 2    score: 67.7 bits;  conditional E-value: 3.2e-21
  TIGR02324   22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllel...Gvereearakakellarlniper....LWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeaka.rgaaligifhd.eevre 213 
                 ++++ +++ v++Ge +a+ G+sG Gkst+++ + + Y+p+ g+i+++          +++ +v  +R ++++ v+q   v+  +s ++ +   l       +e+ + +a+ ++++     p+     + s a +  sGG kqR+ iaral+ d  +LLLde t++Ld+   +vv + ++++ + +  +++ i h   ++r+
  MMETSP1061-20121228|352_1  919 QIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHG-V------PMTDLNVAWLR-NRMSLVAQEP-VLFDISIRDNIRFGLEDAtqeDIEKVAKEANCHDFIME--FPDAydtiVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSnKHRTIVQIAHRlSTIRN 1108
                 678999**************************************9966.3......44566788888.88999**987.99999999988766655400044444444444555554..44441111445677789****************99999*******************9999865156799999996234555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.0   9.3e-21   6.2e-19      18     228 ..     635     843 ..     618     849 .. 0.81
   2 !   68.3   0.1   2.5e-21   1.6e-19      19     229 ..     922    1129 ..     917    1134 .. 0.80
   3 ?    1.2   0.0      0.79        52     104     156 ..    1163    1214 ..    1152    1221 .. 0.76

  Alignments for each domain:
  == domain 1    score: 66.4 bits;  conditional E-value: 9.3e-21
  TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallf.arlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetekta....ellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGslde 228
                 n l+l++++g   ++ Gp G Gk+t++ ++     p+ Gs+l++g+dl+ l+ +   r+ ig   q+p++f   ++++n++    +     + +  a +++++++ i +     g ++ +  + ++Ls Gqkq++ i+  l+ +p+++llDe ++ + +e +  +     +l++e +++r+vvvv h ++ +++ a+ ++vl+ G+++  G+ +e
  MMETSP1061-20121228|352_1 635 YNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVK-WLRKQIGLVSQEPKLFA-ISIADNIKAGRPDAT--SDEVEeAARKANAHDFIMSFP--DGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQealdKLIREDEDNRTVVVVAHRLSTIKN-ADMIAVLSGGTIVETGKHKE 843
                5789*********************************************999876.56888***********6.89****986554433..333320333333334444333..3678889999*********************************987765555500015666667789************98.678**********9998665 PP

  == domain 2    score: 68.3 bits;  conditional E-value: 2.5e-21
  TIGR03411   19 ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksv.lallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkela..kersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229 
                 + l++ v++ge  +i+Gp G Gk+t++ +i    rpd+G+++++g  +t l+ a + r  ++   q+p +f + ++++n++  l++  +  ++ +    +++ ++ i e  +        ++ ++++s Gqkq++ i+  l+++p+llllDe ++ + +e ++ + + l +++  k+r++v + h ++ +r+  +++ vl++Gkv   G+ de+
  MMETSP1061-20121228|352_1  922 QGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWL-RNRMSLVAQEPVLF-DISIRDNIRFGLEDATQEdIEKV--AKEANCHDFIMEFPDAYDT-IVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITsnKHRTIVQIAHRLSTIRNS-DRIIVLNNGKVRESGTHDEL 1129
                 678999********************************************998765.56688889***888.589******99986554302322..2222233333333332221.1233455689******************************999999999****996325789999********985.6789***********99986 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.79
  TIGR03411  104 adksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigm 156 
                  ++s++++l    +++ ++++ + ++  +Le+++ kka  L+ G+  +L ig 
  MMETSP1061-20121228|352_1 1163 VSESLVESLSD-PENAGSTNVVHHAKNSELEKSNAKKAKGLAKGDEYYLLIGA 1214
                 44455555533.3445556677788999*********************9985 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.1   5.2e-21   3.4e-19     282     517 ..     619     846 ..     612     850 .. 0.84
   2 !   15.2   0.0   1.9e-05    0.0013      13      62 ..     918     965 ..     903     981 .. 0.89
   3 !   47.3   0.1   3.6e-15   2.4e-13     168     258 ..    1042    1131 ..    1032    1166 .. 0.92

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 5.2e-21
  TIGR03269 282 vkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdel..akrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilka.r.eeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeive 517
                 kdvs ry    r  v   ++++l++k +    l G sG Gk+t+ ++l    +pt G + +       d t+ + l+    +k iGl+ qe +l++  ++ +n+         de+  a rka     ++ f + + + + d   ++ls G++ r+++a+ li +pri++lde t ++d  ++v v+e++ k  r +e ++t v+v+h +  +++  d +a++  G iv++G+ +e+++
  MMETSP1061-20121228|352_1 619 FKDVSFRYP--TRTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILL-------DGTDLKDLNVKWLRKQIGLVSQEPKLFAI-SIADNIKAGRPDATSDEVeeAARKANAHDFIMSFPDGYNTMVGD-EGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLiReDEDNRTVVVVAHRLSTIKN-ADMIAVLSGGTIVETGKHKELIS 846
                566776665..4777888999*************************************9865.......4444444555568899***********86.689999765554444443227889988889999**999877766.5799******************************************988524146789**********9988.7******************9986 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.9e-05
  TIGR03269  13 levlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiyh 62 
                +++++ +++ +++Ge l i+G sG Gks +++l+     y+p+ G i yh
  MMETSP1061-20121228|352_1 918 QQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQ--FYRPDRGTIFYH 965
                5677889999**********************9975..599********9 PP

  == domain 3    score: 47.3 bits;  conditional E-value: 3.6e-15
  TIGR03269  168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevva 258 
                 ++sGG+kqr+ +ar l ++p lll de t +ld ++  +v +al +   +++ ++v  +h    i + sd+ i+l++G++ e G+ +e++a
  MMETSP1061-20121228|352_1 1042 QVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIRN-SDRIIVLNNGKVRESGTHDELMA 1131
                 78***********************************************************999987.9******************9875 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   9.9e-19   6.5e-17       9     176 ..     628     804 ..     624     828 .. 0.76
   2 !   68.3   0.0   2.3e-21   1.5e-19       9     182 ..     914    1097 ..     909    1113 .. 0.81

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 9.9e-19
  TIGR01189   9 eRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaee.llylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgl.......edlpv....aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlar 176
                +R e  +++gl+++++aG ++++ Gp G GK+t++ +l     p+ G++ l++++l++ + ++ ++ +  ++ ++ l  ++s+++n+k  + + +s++  veea  k++ +++        +++v    +qLs Gqk+R+++ar l++k ++ +LDE t alD e+  +++e+l++ +++
  MMETSP1061-20121228|352_1 628 TRTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKqIGLVSQEPKL-FAISIADNIKAGRPDATSDE--VEEAARKANAHDFimsfpdgYNTMVgdegSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIRE 804
                5889999*************************************************999988766505555555555.689*******9998887544..5555555444433111111134444233379***********************************88877777665543 PP

  == domain 2    score: 68.3 bits;  conditional E-value: 2.3e-21
  TIGR01189    9 eRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealek.......vgLsgledlpv.....aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivll 182 
                 +R e+++++gl++ ++ Ge+l+++Gp G GK+t++ ++    +p+ G++ +++ ++++ +  + ++ + l  ++ +  ++s+++n++f  ++ ++e+   e+  ++       ++  ++ d++v     +q+s Gqk+R+a+ar ll    l +LDE t alD e+ ++++++l++ +++   +++
  MMETSP1061-20121228|352_1  914 SRPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFGLEDATQEDI--EKVAKEanchdfiMEFPDAYDTIVgsaatSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIV 1097
                 6999********************************************************99*99999999999999***********8887775553..3333220001122444455555432222279***************************************9999987766555544 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   1.6e-18     1e-16       4     220 ..     618     845 ..     616     859 .. 0.82
   2 !   68.4   0.0   2.3e-21   1.5e-19      14     223 ..     917    1133 ..     906    1162 .. 0.84

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 1.6e-18
  TIGR03522   4 evsdlsklygkqkald...evsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlk.nslevrkniGylPehnPlyldlyvreylef...saalyklkgrklkkrveelielv..GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveir....evikeiakdktvilsthimqevealcdrviiinkGkivadkkleelk 220
                e +d+s  y ++  +d    + ++++ G  v + GP G Gkst++++l  +  ++ Gs+ ++g+d  + n +  rk+iG + +   l   + + + ++     a+  ++++ ++k + +++i     G ++      ++ls G +qr+ +a+al+ +P++++lde t+ ld +  v ++    ++i+e   ++tv++ +h +  ++   d + ++  G iv   k +el 
  MMETSP1061-20121228|352_1 618 EFKDVSFRYPTRTEVDvynGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDlNVKWLRKQIGLVSQEPKL-FAISIADNIKAgrpDATSDEVEEAARKANAHDFIMSFpdGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQealdKLIREDEDNRTVVVVAHRLSTIKN-ADMIAVLSGGTIVETGKHKELI 845
                5667777776665443222899*******************************************99835566899***88766555.5677777765422279999*************99986448888888999**********************************9876655411116777777889********999986.6899999999999998888874 PP

  == domain 2    score: 68.4 bits;  conditional E-value: 2.3e-21
  TIGR03522   14 kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylef...saalyklkgrklkkrveelielvGlkaeqhkki......galskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk..tvilsthimqevealcdrviiinkGkivadkkleelkaae 223 
                 +q++ + + + ++kGe +  +GP G Gkst+++++  + ++d G+++ +g  +++ +++  +n   l   +P+  d+ +r+ ++f    a+  ++++ +++ + +++i +    ++++  i      +++s G +qr+ +a+all dP++l+lde t+ ld +    +++ + +i+ +k  t++  +h +  ++   dr+i++n+Gk+  + + +el a +
  MMETSP1061-20121228|352_1  917 EQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFgleDATQEDIEKVAKEANCHDFIME---FPDAYDTIvgsaatSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKhrTIVQIAHRLSTIRN-SDRIIVLNNGKVRESGTHDELMALK 1133
                 578888899999*******************************************999999999999******************3333445555555555555555554...4555544433333389***********************************999********865444999999*9999986.7************999999997765 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.7   0.0   7.4e-19   4.9e-17      19     239 ..     634     862 ..     615     880 .. 0.78
   2 !   66.7   0.0   5.7e-21   3.7e-19      17     221 ..     918    1128 ..     904    1134 .. 0.80

  Alignments for each domain:
  == domain 1    score: 59.7 bits;  conditional E-value: 7.4e-19
  TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepv.pararlarakigvvpqfdnldreftvrenllvfgryfglstreieevips..llefar.leskadvrv....adlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllar...gktilltthlmeeaerlcdrlcvleagrkiaegrpdalideqig.cdvieiyggdl 239
                v n l + i ag    l gp g gksti +l+  +  p  g i + g +    +++  r +ig+v+q  +l   +++ +n+   gr     + e+ee+       +f   +    ++ v    ++lsgg k+r+++arali  p++++lde t+ ld  +  ++ e l  l+      +t+++ +h +    +  d + vl  g+ +  g+ + li  +    d+++   g+ 
  MMETSP1061-20121228|352_1 634 VYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLkDLNVKWLRKQIGLVSQEPKLF-AISIADNIK-AGRPDAT-SDEVEEAARKanAHDFIMsFPDGYNTMVgdegSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIREdedNRTVVVVAHRLSTI-KNADMIAVLSGGTIVETGKHKELISRHGAyYDLVQAQKGNQ 862
                66899**************************************998877515689************99985.567778865.6887655.5667766544114455431223334444333389**********************************************97522268*******99876.568*******9999999******998743145666655555 PP

  == domain 2    score: 66.7 bits;  conditional E-value: 5.7e-21
  TIGR01288   17 kvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfglstreieevips......llefarl..eskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrslla.rgktilltthlmeeaerlcdrlcvleagrkiaegrpda 221 
                 + + + l +++ +ge + ++gp g gkst+ +l+  +  pd+g+i   g p+   ++   r ++ +v+q   l  ++++r+n+  fg     +  +ie+v         ++ef          +  +++sgg k+r+++aral+ dp+ll+lde t+ ld  +  ++ + l  + + + +ti+  +h +    r  dr+ vl++g+    g  d 
  MMETSP1061-20121228|352_1  918 QQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDlNVAWLRNRMSLVAQEPVL-FDISIRDNI-RFGLE-DATQEDIEKVAKEanchdfIMEFPDAydTIVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSnKHRTIVQIAHRLST-IRNSDRIIVLNNGKVRESGTHDE 1128
                 557788999***************************************999865267889*********7766.789*****7.46654.33445677765432211225666433102334567799********************************************9986267899999999875.699*********98766666655 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   0.0   1.1e-19   7.2e-18      41     256 ..     636     848 ..     627     858 .. 0.77
   2 !   64.0   0.0   3.8e-20   2.5e-18      44     253 ..     925    1130 ..     920    1146 .. 0.85

  Alignments for each domain:
  == domain 1    score: 62.5 bits;  conditional E-value: 1.1e-19
  TIGR03415  41 adasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakae.rrkrveeqlelvglaeWadkkv....gelsGGmqqrvGlarafateadillmdePfsaldP...liraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkP 256
                ++ +l+++ G  + l G sG Gks++++ + ++   + G++l+       d+  ++ + lr    k++ +v q+  l+   ++++n+  G   +   + e   ++++++  ++++ +  ++ v     +lsGG +qr+ +ara+  +  i+l+de  sald    +i ++  d l++  ++ ++t+v v+h l   +k  + ia++ gG iv +g+ +e++ + 
  MMETSP1061-20121228|352_1 636 NGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGT----DLKDLNVKWLR----KQIGLVSQEPKLFA-ISIADNIKAGRPDATSDEVEeAARKANAHDFIMSFPDGYNTMVgdegSQLSGGQKQRISIARALIAKPRIILLDEATSALDSeseVIVQEALDKLIRE-DEDNRTVVVVAHRLS-TIKNADMIAVLSGGTIVETGKHKELISRH 848
                5689************************************998543....55555655555....58*******99886.79********865544443303333333333444544444444111167********************************83335556666666664.4569**********7.79**********************99875 PP

  == domain 2    score: 64.0 bits;  conditional E-value: 3.8e-20
  TIGR03415   44 sldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqle.lvglaeWadkkv.....gelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeiv 253 
                  + v++Ge l ++G sG Gks++++ + ++    rG +  +     v ++ ++ a lr    +r+s+v q+  l+   ++++n+ fGle +   + e+  + ++  + ++++ +  d+ v      ++sGG +qr+ +ara+  + ++ll+de  sald      +qd l ++ ++ ++tiv ++h l   ++  +ri ++++G++   gt +e++
  MMETSP1061-20121228|352_1  925 EMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYH----GVPMTDLNVAWLR----NRMSLVAQEPVLFD-ISIRDNIRFGLEDATQEDIEKVAKEANCHDfIMEFPDAYDTIVgsaatSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLS-TIRNSDRIIVLNNGKVRESGTHDELM 1130
                 5789*********************************9875....4677788888887....58999999987775.79**********999888877655554444145666665554411111689************************************************************7.7999************9999999876 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.3e-19   8.8e-18       1     199 [.     640     844 ..     640     851 .. 0.76
   2 !   58.3   0.1   2.9e-18   1.9e-16       3     199 ..     928    1129 ..     926    1137 .. 0.74

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 1.3e-19
  TIGR03771   1 lsvdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrk.....grreiGyvpqrhefawdfpidveqtvlsGragliG.....llrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeela...gegtailmtthdlaeavatcdrvvllngrvvadgapdql 199
                l++++G  ++l Gp G Gk+t+++ +  +  ++ Gs+ ++g   ++      r++iG v q  ++   f i++++ + +Gr            r+++  df+           + +      +lsGGq+qr+ +aral  kp+++llde  + ld  s+  + e + +l    ++++++++++h l+   ++    vl  g++v +g+ ++l
  MMETSP1061-20121228|352_1 640 LKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDlnvkwLRKQIGLVSQEPKL---FAISIADNIKAGRPDATSdeveeAARKANAHDFIMSFP---D-GYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLIredEDNRTVVVVAHRLSTIKNADMIAVLSGGTIVETGKHKEL 844
                57899************************************86543212114689******9876...99***********8765411111344555555543322...2.223334444569*********************************9988888888777511146789********97666666667778899999988877 PP

  == domain 2    score: 58.3 bits;  conditional E-value: 2.9e-18
  TIGR03771    3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawd....fpidveqtvlsGr....agliGll.rrpkkadfaa.vadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelageg.tailmtthdlaeavatcdrvvll.ngrvvadgapdql 199 
                 v+kGe l+++Gp G Gk+t+++ i  + ++ +G++   g +      ++ ++ +r  +  +    f i++++ +  G        i  + + ++  df+    da ++     + + +  ++sGGq+qr+ +aral  +p+llllde  + ld  s+  + + + ++++++ ++i+  +h l+  +  +dr+++l ng+v   g+ d+l
  MMETSP1061-20121228|352_1  928 VKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPM--TDLNVAWLRNRMSLVAQepvlFDISIRDNIRFGLedatQEDIEKVaKEANCHDFIMeFPDAYDT----IVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKhRTIVQIAHRLST-IRNSDRIIVLnNGKVRESGTHDEL 1129
                 789************************************754..4567888888888766523335677777776554110022343331233344554313445444....456677889********************************************9987651688889999975.677788765516788777777776 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0     1e-20   6.8e-19      13     227 ..     631     843 ..     622     849 .. 0.81
   2 !   55.5   0.0   1.1e-17     7e-16      17     218 ..     921    1119 ..     916    1133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1e-20
  TIGR02633  13 gvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtr...pvsdlGlGqqqlveiakalnkqvrllildepsaslte.ket...eilldiirdlkakgvacvyishkleevkavsdtisvirdGqhvatkdaea 227
                +v   ++++lk++aG  v+lcG  G Gkst++++l   y   ty G il +g++lk  +++   rk i ++ qe  l   +s+++ni  G+  + +   ++++a    a++++     ++  +t      s+l +Gq+q + ia+al  + r+++lde +++l   +e+   e l ++ir+  + + + v ++h+l  +k  +d i+v+  G  v t + ++
  MMETSP1061-20121228|352_1 631 EVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDP-TY-GSILLDGTDLKDLNVKW-LRKQIGLVSQEPKLF-AISIADNIKAGRPDATSD-EVEEAARKANAHDFIMSF--PDGYNTMvgdEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSeSEVivqEALDKLIRED-EDNRTVVVVAHRLSTIKN-ADMIAVLSGGTIVETGKHKE 843
                688899*******************************9964.45.9**************86.5889********997.69*********9766665.688888888888887655..44444440014577889****************************6514432223344566654.456677899*******97.7*********9999977655 PP

  == domain 2    score: 55.5 bits;  conditional E-value: 1.1e-17
  TIGR02633   17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrel..kldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlk.akgvacvyishkleevkavsdtisvirdGq 218 
                 ++++++ ++ Ge +++ G  G Gkst+++++   y      G i+++g ++   ++    r+ ++++ qe +l  ++s+ +ni +G e + +   +++ a    +++++ e     d++  + + s++ +Gq+q + ia+al +   ll+lde +++l  +  +++ d + ++  +k  + v i+h+l  ++  sd+i v+ +G+
  MMETSP1061-20121228|352_1  921 FQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPD--RGTIFYHGVPMTDLNVAWL-RNRMSLVAQEPVLF-DISIRDNIRFGLEDATQE-DIEKVAKEANCHDFIMEFpdAYDTIVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITsNKHRTIVQIAHRLSTIRN-SDRIIVLNNGK 1119
                 6789999**************************99765..6**************9865.6779******9886.8**********9987777.5777888899****99984346777788899*********************************9888888777777765134556799*******986.9******9997 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   2.6e-17   1.7e-15     327     550 ..     607     838 ..     588     841 .. 0.84
   2 !   59.4   0.0   8.1e-19   5.4e-17     341     548 ..     907    1121 ..     898    1125 .. 0.79
   3 ?    3.1   0.1     0.093       6.2      53     156 ..    1277    1381 ..    1265    1442 .. 0.79

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 2.6e-17
  TIGR01194 327 lldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekk...qasldqattylsrleledkvkvedlnystt.....tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrr...GktilvishddryfeladrlikladGkvvke 550
                 ++++  v+ +e+kdv + y+     + +    ++l+i+ G  v + G  G Gkst+i+ll  +y p  G +lldG  + d      r+    v  +  lf   +  + k    +a+ d+ ++  ++ + +d +     +y t      ++ls Gq++r+++  a + +  ++llde ++  d     v  +e l  l r+    +t++v++h     + ad +  l+ G++v+ 
  MMETSP1061-20121228|352_1 607 GMKPKAVVGDIEFKDVSFRYPTRTEVDVY--NGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKDLNVKWLRKQIGLVSQEPKLFAISIADNIKAgrpDATSDEVEEAARKANAHDFIMSFPDGYNTMvgdegSQLSGGQKQRISIARALIAKPRIILLDEATSALDSES-EVIVQEALDKLIREdedNRTVVVVAHRLSTIKNADMIAVLSGGTIVET 838
                4688999*************998877776..579*******************************************************************98888443322225666777777777777777777777888642222268******************99******999999875.6778899999998633368**************************975 PP

  == domain 2    score: 59.4 bits;  conditional E-value: 8.1e-19
  TIGR01194  341 dvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqattylsrleledkvk..ved..lny......stttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvv 548 
                 dv+++y++    + f    +++ +++Ge + ivG  G Gkst+i+l+  +y+p  G ++ +G +++d      r+ +s v  +  lfd  +  d+ +    d +++ ++++  e   +  +++   +y      ++t+++s Gq++r+a+  a l +  +lllde ++  d    rv  + l      + +ti+ i+h     + +dr+i l +Gkv 
  MMETSP1061-20121228|352_1  907 DVNFKYPSRPEQQIF--QGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMTDLNVAWLRNRMSLVAQEPVLFDISIR-DNIRFGLEDATQEDIEKVAKEANCHdfIMEfpDAYdtivgsAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLSTIRNSDRIIVLNNGKVR 1121
                 566665555444444..468999*****************************************************************9998.5444333333333444443333222113321123311111145899***************************************9999999999****************************85 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.093
  TIGR01194   53 qvllsfvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtlli.lttllvelavtlfglaylaylsvvvfll 156 
                 q+ + + Gl + al+ +     +   ++ r+  r+r +  + ++   +   + r    + + l++d   + +++   + tl+++la +l gl       ++  l+
  MMETSP1061-20121228|352_1 1277 QISYIYIGLMVAALVGNTLVFYGFGTATERMNKRVRDASFKNLMRQEVAYFDTRAVSAITSQLSDDAAMIHSFSGEpIRTLVMNLASVLVGLVVSFVYMWPFALV 1381
                 456778999999999999999999999999999999999999999999999999999999999999999999986437889999988888775443334444333 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   3.1e-05    0.0021     323     381 ..     617     678 ..     568     701 .. 0.86
   2 !   30.5   0.0   4.5e-10     3e-08     160     218 ..     754     818 ..     728     874 .. 0.81
   3 !   18.0   0.0   2.8e-06   0.00019     334     380 ..     917     963 ..     900     994 .. 0.88
   4 !   36.8   0.0   5.9e-12   3.9e-10     148     217 ..    1029    1102 ..     996    1130 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 3.1e-05
  TIGR03719 323 ievenlskafgdkl...liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381
                ie++++s ++  ++   +++ l++k+ +g+ v + Gp G Gkst+++l+    +p  G++ +
  MMETSP1061-20121228|352_1 617 IEFKDVSFRYPTRTevdVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILL 678
                788999999988763346789*****************************999999999876 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 4.5e-10
  TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey......kGtvvavthdr 218
                ++lsGG+k+r++++r l+ kP ++llde t  ld+es   +++ l +       + tvv+v+h  
  MMETSP1061-20121228|352_1 754 SQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKLirededNRTVVVVAHRL 818
                68***********************************7777666654322222256888888855 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 2.8e-06
  TIGR03719 334 dklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelk 380
                ++ +++ l++ + kg  + ++Gp G Gkst+++li +  +pd+G++ 
  MMETSP1061-20121228|352_1 917 EQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIF 963
                567999**************************************985 PP

  == domain 4    score: 36.8 bits;  conditional E-value: 5.9e-12
  TIGR03719  148 dalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey....kGtvvavthd 217 
                 da       a  +++sGG+k+r+a++r ll +P+llllde t  ld+es   ++  l +     + t+v ++h 
  MMETSP1061-20121228|352_1 1029 DAYDTIVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNItsnkHRTIVQIAHR 1102
                 44445556778899***********************************8887777765511115688888885 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   3.1e-15     2e-13     452     648 ..     616     826 ..     559     834 .. 0.73
   2 !   51.0   0.0   2.7e-16   1.8e-14     436     644 ..     885    1107 ..     845    1119 .. 0.72

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 3.1e-15
  TIGR00954 452 gikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqii..YPdssedfkerglsdkdLeqiLeevkLedllereggwda.vqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvE....dklyelake..vgitllsvshrksLwkyHey 648
                 i f ++    P      + + L++++k G+ + ++GP G GKs +  +l  ++ P+yg           l  k  ++++  v q P +   ++ d i    Pd+++d  e   + ++ +        + ++    g+++ v d    LsgG+kqRi++AR +  kP+ ++LDE+tsA+  + E    ++l +l++e   + t++ v+hr s +k  ++
  MMETSP1061-20121228|352_1 616 DIEFKDVSFRYPtrTEVDVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYdPTYGsilldgtdlkDLNVKWLRKQIGLVSQEPKLFAISIADNIKagRPDATSDEVEEAARKANAH--------DFIMSFPDGYNTmVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEvivqEALDKLIREdeDNRTVVVVAHRLSTIKNADM 826
                5777777777774323335689******************************988****9999966665555556678889999999999888888875223555555555444444443........4466666777651679999********************************8886611114444555541146678888888888776655 PP

  == domain 2    score: 51.0 bits;  conditional E-value: 2.7e-16
  TIGR00954  436 kselvag.rgkveaqdngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLed.llereggwdavqd..WkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvE....dklyelakevgitllsvshrksLwk 644 
                 ++ + ++ +++  ++++ i f +++   P    + + + L++ vk+G+ l i+GP G GKs +  ++ +++ P +g           l     ++++  v q P +   ++Rd i +          + +++d+e++ +e + +d ++e   ++d++        +sgG+kqRia+AR +   P+  +LDE+tsA+  + E    d+l + + +++ t++ ++hr s ++
  MMETSP1061-20121228|352_1  885 SGARFPTkSSTFFEKEDLITFCDVNFKYPsrPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYrPDRGtifyhgvpmtDLNVAWLRNRMSLVAQEPVLFDISIRDNIRFG-------LEDATQEDIEKVAKEANCHDfIMEFPDAYDTIVGsaATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESErvvqDALDNITSNKHRTIVQIAHRLSTIR 1107
                 34455556778899999**********9965578999******************************998757777666665554322333346667777777777777777776543.......23455578888899998887255667789998651156789******************************9997722225555666677788999999988776 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   4.6e-14     3e-12      23     228 ..     640     848 ..     618     858 .. 0.75
   2 !   51.5   0.0     3e-16     2e-14      24     222 ..     928    1126 ..     914    1142 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 4.6e-14
  TIGR02323  23 f.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGani.gerllavgar.hyGkiraaak.wlekveidaari...kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvre..lglaviivth.lavarllaqrllvmkqGrvvesGltrvl.pkh 228
                + +  G  +++ G sG Gkst+++ l     ++ G++  +  +       l + + +  lr + Glv q+p+ + +  s   ni + r+ a+        ++a+a+ ++       + +   + +++sGG +qr+ iar+l+++pr++++ e t  l s    ++   l +l+re   + +v++v+h l+ ++  a+ + v+  G +ve+G  + l  +h
  MMETSP1061-20121228|352_1 640 LkIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTD-------LKDLNVK-WLRKQIGLVSQEPKLFAI--SIADNIkAGRPDATSDEvEEAARKANAHdFIMSFPDGYNTMvgdEGSQLSGGQKQRISIARALIAKPRIILLdEATSALDSESEVIVqeALDKLIREdeDNRTVVVVAHrLSTIK-NADMIAVLSGGTIVETGKHKELiSRH 848
                44788999*****************************998766.......3344444.57889********97655..5556662347766655413444444555577776655555558899**************************999*9996655555445567777752257899*****777776.68899************985443555 PP

  == domain 2    score: 51.5 bits;  conditional E-value: 3e-16
  TIGR02323   24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGkiraaak...wlekveidaa..ri....kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGlt 222 
                 +  Ge l+ivG sG Gkst+++ + +   +d+G++ y+       ++ l+ a     lr    lv q+p     ++s   ni   l    +    k++++a+   ++  +e + a   i      ++ sGG +qr+ iar+l+  p l+++ e t  l s   r++   l ++  + + +++ ++h l+ +r  ++r++v+++G+v esG  
  MMETSP1061-20121228|352_1  928 VKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVP----MTDLNVAW----LRNRMSLVAQEPV--LFDISIRDNIRFGLEDATQEDIEKVAKEANchdFI--MEFPDAydTIvgsaATSQVSGGQKQRIAIARALLRDPELLLLdEATSALDSESERVVqdALDNITSNKHRTIVQIAHrLSTIRN-SDRIIVLNNGKVRESGTH 1126
                 678**********************************8765....45555444....3455678999986..46778888888888877788888887777642233..344432113445557899***********************99************9988899***************9999996.78*************976 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   1.2e-14   7.9e-13     695     965 ..     548     821 ..     518     876 .. 0.72
   2 !   42.5   0.0   5.7e-14   3.8e-12      71     289 ..     915    1120 ..     890    1131 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 1.2e-14
  TIGR00956 695 gakkkgeilvfkkgelkkakkkeeeseskkndieagevlkstdltdeseevneeveeekesg.....eeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkld....ssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkla...daGqailCtiHqPsai 965
                +++++ ++        +k++++++++++ k+d +  + l++  + ++  +++ +++++++++      +  e++d+++  + ++e   + + ++  +k G+  AL G sG Gk t+++ L    +    t g +l +g++l+    +  +++iG v q+   l    + + ++       ++ev ++ ++    +   ++ + +  + +vG  G+ L+  q++r++i+  L+AkP  ++ lDe ts LDs +  ++ + l kl    +  ++++   H  s i
  MMETSP1061-20121228|352_1 548 FVDSRSACYPALVAIYRKTSREDQTETDLKKDEDMRKSLQRRSTLNSLPHYQIDSSSPSGMKpkavvGD-IEFKDVSFRYPTRTEV-DVYNGLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDP---TYGSILLDGTDLKdlnvKWLRKQIGLVSQEP-KLFAISIADNIKAGRPDATSDEVEEAARKANAHDF--IMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKP-RIILLDEATSALDSESEVIVQEALDKLIredEDNRTVVVVAHRLSTI 821
                555555555555556677777777777777888877888887788888888877777766334444333.4799******999886.6799*************************9988655443...334555555544311113456789**99875.67778888999988888888888876655555444..3567788899***************************.8899***************9999999862223568888888887764 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 5.7e-14
  TIGR00956   71 skkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeikkhy.rgdvvYsaetdvHlpsltvketLdfaarlktpqnRvkgvsreeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkq 289 
                   +++i++ ++ ++k ge + ++G+ g G+st+++ i    e+f + + ++i Y g+   +++  + r  +  +a++ v    +++ + + f  +  t q+ +++v +    ++  d+++       +++t vG      vsGG+++R++ia +l+ +++++++D+at  LDs     +  al ++++  + t +  ++  s  +    d+++vl++Gk 
  MMETSP1061-20121228|352_1  915 RPEQQIFQGLEMCVKKGETLAIVGPSGQGKSTVIQLI----EQFYRPDRGTIFYHGVPMTDLNVAWlRNRMSLVAQEPVL-FDISIRDNIRFGLEDAT-QEDIEKVAK---EANCHDFIME---FPDAYDTIVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSNKHRTIVQIAHRLS--TIRNSDRIIVLNNGKV 1120
                 5678999*************************99875....79999999*************877615555566666665.579******99988655.444555554...4566777776...57899********************************************98877777888777766665433333333..4556799999999986 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   1.2e-15   7.8e-14     948    1175 ..     637     870 ..     607     882 .. 0.83
   2 !   34.3   0.0   9.8e-12   6.5e-10     949    1148 ..     924    1130 ..     894    1162 .. 0.78

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 1.2e-15
  TIGR01257  948 rlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilf.yaqlkgrsweeaqlemea....mledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllk....yrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglyltlvrkmkniqsqrkgseg 1175
                  ln+ +      a+ g  g gk+t + +l  +  pt g++l+ g d++  n+  +r+ +g++ q   lf  +++a+ i     +      eea  + +a    m    g      +e  +lsgg ++++s+a a++   ++++lde ts +d  s   + + l k        rt+++ +h +       d ia++s g +  +g    l      g y  lv+  k  q ++ g++ 
  MMETSP1061-20121228|352_1  637 GLNLKIKAGTTVALCGPSGGGKSTIIQLLERFYDPTYGSILLDGTDLKdLNVKWLRKQIGLVSQEPKLFA-ISIADNIKAgRPDATSDEVEEAARKANAhdfiMSFPDGYNTMVGDEGSQLSGGQKQRISIARALIAKPRIILLDEATSALDSESEVIVQEALDKlireDEDNRTVVVVAHRLSTIK-NADMIAVLSGGTIVETGKHKELISR--HGAYYDLVQAQKGNQKEKTGTDE 870 
                 5778888888999*********************************9626999**************996.78999997624456667778887776654443666789999999**************************************99876655444411114678********998765.689**********999998777655..56789999999999999988765 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 9.8e-12
  TIGR01257  949 lnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdi.etnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamledtglhh.......krneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrs..grtiimsthhmdeadllgdriaiisqgrlycsgtplflk 1148
                 l++ + + +  a++g  g gk+t + ++  +  p  gt++  g  + + n+  +r+ + ++ q  +lf  +++ + i f  +   +  +  ++  ea   d  +              + ++sgg ++++++a a++ d  +++lde ts +d  s r + d l +  s   rti+  +h +       dri ++++g++  sgt   l 
  MMETSP1061-20121228|352_1  924 LEMCVKKGETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYHGVPMtDLNVAWLRNRMSLVAQEPVLFD-ISIRDNIRFGLEDATQ-EDIEKVAKEANCHDFIMEFpdaydtiVGSAATSQVSGGQKQRIAIARALLRDPELLLLDEATSALDSESERVVQDALDNITSnkHRTIVQIAHRLSTI-RNSDRIIVLNNGKVRESGTHDELM 1130
                 5566666777899**************************998876526788889*************96.8999999996443222.22233444554444443331000000344556799******************************************887762258999999999766.479***************975554 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.037       2.4     625     651 ..     637     663 ..     628     672 .. 0.87
   2 !   25.7   0.1   9.8e-09   6.5e-07     822     919 ..     749     840 ..     728     845 .. 0.79
   3 ?    0.8   0.0      0.34        23     623     651 ..     921     949 ..     914     956 .. 0.82
   4 !   18.9   0.0   1.1e-06   7.4e-05     823     903 ..    1036    1115 ..     994    1126 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.037
  TIGR00630 625 didvsiplglltvitGvsgsGkstLin 651
                 ++++i+ g+ +++ G+sg Gkst+i+
  MMETSP1061-20121228|352_1 637 GLNLKIKAGTTVALCGPSGGGKSTIIQ 663
                6899********************985 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 9.8e-09
  TIGR00630 822 lGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdD...ikkLlevlqrlvdkGntvvviehnldviksaDyiidlGPeGGekGGkvvasgt 919
                +G +   LsGG  qr+ +a+ L ++     + +lDe t  L  +    +++ l+ l r  ++  tvvv+ h l  ik+aD+i  l      +GG++v +g 
  MMETSP1061-20121228|352_1 749 VGDEGSQLSGGQKQRISIARALIAKP---RIILLDEATSALDSESeviVQEALDKLIREDEDNRTVVVVAHRLSTIKNADMIAVL------SGGTIVETGK 840
                6889999***************9875...6899*********9973334445555555556678*****************9876......4566666655 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.34
  TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLin 651
                ++ +++ ++ g+  +i G+sg Gkst+i+
  MMETSP1061-20121228|352_1 921 FQGLEMCVKKGETLAIVGPSGQGKSTVIQ 949
                566778888899999***********997 PP

  == domain 4    score: 18.9 bits;  conditional E-value: 1.1e-06
  TIGR00630  823 Gqpat.tLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdk.GntvvviehnldviksaDyiidl 903 
                 G +at  +sGG  qr+ +a+ L +      l +lDe t  L  +  + + + l++++++   t+v i h l  i+++D ii l
  MMETSP1061-20121228|352_1 1036 GSAATsQVSGGQKQRIAIARALLRD---PELLLLDEATSALDSESERVVQDALDNITSNkHRTIVQIAHRLSTIRNSDRIIVL 1115
                 55554259**************875...679**************99999****998751569999**************977 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00037     0.024      14      58 ..     641     684 ..     630     705 .. 0.81
   2 ?    4.2   0.0       0.1       6.6      16      40 ..     929     953 ..     921     960 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00037
  TIGR00455  14 kkqksvvlWltGlsgsGkstianalekkLeekglrvevLDGDnvr 58 
                k + ++++ l G+sg Gksti + le ++++  + +++LDG  ++
  MMETSP1061-20121228|352_1 641 KIKAGTTVALCGPSGGGKSTIIQLLE-RFYDPTYGSILLDGTDLK 684
                55779999*************99886.589999********8775 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.1
  TIGR00455  16 qksvvlWltGlsgsGkstianalek 40 
                +k+ +l + G+sg Gkst+ + +e+
  MMETSP1061-20121228|352_1 929 KKGETLAIVGPSGQGKSTVIQLIEQ 953
                6889999************988776 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.032       2.1       1      21 [.     645     665 ..     645     671 .. 0.87
   2 !   10.2   0.0    0.0015     0.096       2      35 ..     932     965 ..     931     974 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.032
  TIGR02322   1 grlilvvGpsGaGKDtlldla 21 
                g+ +++ GpsG GK t+++l+
  MMETSP1061-20121228|352_1 645 GTTVALCGPSGGGKSTIIQLL 665
                67799*************976 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0015
  TIGR02322   2 rlilvvGpsGaGKDtlldlararladeprvlfar 35 
                + +++vGpsG GK t+++l  +  + ++   f +
  MMETSP1061-20121228|352_1 932 ETLAIVGPSGQGKSTVIQLIEQFYRPDRGTIFYH 965
                5678***************999888777777766 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0025      0.16     114     133 ..     649     668 ..     638     679 .. 0.84
   2 !    7.0   0.0    0.0058      0.38     108     130 ..     929     951 ..     919     957 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0025
  TIGR00602 114 LitGPsGCgKsTvikiLsKe 133
                 ++GPsG gKsT+i+ L + 
  MMETSP1061-20121228|352_1 649 ALCGPSGGGKSTIIQLLERF 668
                58*************99765 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0058
  TIGR00602 108 kkkriLLitGPsGCgKsTvikiL 130
                kk   L i GPsG gKsTvi+ +
  MMETSP1061-20121228|352_1 929 KKGETLAIVGPSGQGKSTVIQLI 951
                3444899*************976 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.015      0.96       4      23 ..     648     667 ..     645     677 .. 0.80
   2 ?    6.3   0.0     0.021       1.4       4      21 ..     934     951 ..     931     960 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.015
  TIGR03263   4 ivisgpsGvGKstlvkklle 23 
                + ++gpsG GKst+++ l +
  MMETSP1061-20121228|352_1 648 VALCGPSGGGKSTIIQLLER 667
                6799***********98865 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.021
  TIGR03263   4 ivisgpsGvGKstlvkkl 21 
                + i+gpsG GKst+++ +
  MMETSP1061-20121228|352_1 934 LAIVGPSGQGKSTVIQLI 951
                5689**********9876 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.067       4.4       2      23 ..     648     669 ..     647     672 .. 0.91
   2 ?    7.1   0.0     0.014      0.92       2      23 ..     934     955 ..     933     958 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.067
  TIGR00152   2 igltGgigsGKstvakilkdky 23 
                ++l G  g GKst++++l+  y
  MMETSP1061-20121228|352_1 648 VALCGPSGGGKSTIIQLLERFY 669
                89****************9776 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.014
  TIGR00152   2 igltGgigsGKstvakilkdky 23 
                 +++G  g GKstv++++++ y
  MMETSP1061-20121228|352_1 934 LAIVGPSGQGKSTVIQLIEQFY 955
                599***************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       334  (0.0814237); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        74  (0.01804); expected 4.1 (0.001)
Passed Fwd filter:                        62  (0.0151146); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              62  [number of targets reported over threshold]
# CPU time: 2.30u 0.23s 00:00:02.52 Elapsed: 00:00:01.20
# Mc/sec: 1707.06
//
Query:       MMETSP1061-20121228|362_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.58    7.1   7.4       0.71    6.8   5.1    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   5.1   0.00017      0.71      86     145 ..       5      67 ..       2      95 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00017
  TIGR00601  86 ePaatpesaptptp.satpasvaekksaaPasaveeessaeeeatatalesedts..aesegd 145
                +P+++p+ apt +p +++  ++++++++ P+ + + + ++ e++ a+++e++ +   a+++g+
  MMETSP1061-20121228|362_1   5 SPTQAPTQAPTQAPtQSPTRVPTQAPTQVPTPSLTSGDPTFEPTFAPTFEPTFAPtfAPTSGS 67 
                567777777777775566677788888888888888999999999999887654400344443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 861.07
//
Query:       MMETSP1061-20121228|354_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1180.96
//
Query:       MMETSP1061-20121228|364_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1061-20121228|355_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|368_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|371_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|370_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 945.92
//
Query:       MMETSP1061-20121228|374_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   15.4   0.2       0.06   10.4   0.0    2.2  2  TIGR03275 methan_mark_8: putative methanogenesis marker protein 8
  ------ inclusion threshold ------
      0.014   12.7   1.2        0.6    7.4   0.0    2.7  3  TIGR00672 cdh: CDP-diacylglycerol pyrophosphatase
      0.014   12.2   0.1       0.54    7.0   0.0    2.2  2  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
      0.016   12.4   1.4       0.16    9.1   0.2    2.7  3  TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit


Domain annotation for each model (and alignments):
>> TIGR03275  methan_mark_8: putative methanogenesis marker protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0053       5.4     167     217 ..       5      56 ..       1      71 [. 0.62
   2 !   10.4   0.0   5.8e-05      0.06     185     248 ..      73     137 ..      48     147 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0053
  TIGR03275 167 avtvadaedakeirelekeldldvliiavhvtGidee.daeelvkyaDivts 217
                  +v++   a +  + + + d d++i+av    +     +eel +  Div +
  MMETSP1061-20121228|374_1   5 MAAVKNNGRALQYASEDLQNDRDIVIAAVNKNELALYyASEELQNDGDIVLA 56 
                4456666666666666777777777777777766644145566666677765 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 5.8e-05
  TIGR03275 185 eldldvliiavhvtGideeda.eelvkyaDivtsCaskairelakkkallqvgsavPvyaltkkG 248
                  d d +++avh  G+  e+a eel +  +iv +   +  r l +    lq    + + a+ + G
  MMETSP1061-20121228|374_1  73 RDDRDFILAAVHKNGLALEHAsEELQNDRNIVMAAVKNDGRALQHASEDLQNDRDIVMAAVKNDG 137
                34677888888888888776524555566777776666666666666667766666666666655 PP

>> TIGR00672  cdh: CDP-diacylglycerol pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.1      0.01        11     216     243 ..      23      49 ..       4      56 .. 0.81
   2 ?    7.4   0.0   0.00059       0.6     212     244 ..      68     100 ..      54     107 .. 0.73
   3 ?   -0.7   0.0      0.17   1.7e+02     216     241 ..     123     147 ..     101     149 .] 0.79

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.01
  TIGR00672 216 qsdnsfvllatqrnlltlnrasaeeiqd 243
                q d  +v+ a ++n l+l  as  e+q+
  MMETSP1061-20121228|374_1  23 QNDRDIVIAAVNKNELALYYASE-ELQN 49 
                88999**************9985.5554 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00059
  TIGR00672 212 avvr.qsdnsfvllatqrnlltlnrasaeeiqdh 244
                a +r + d  f+l a ++n l+l+ as e +q+ 
  MMETSP1061-20121228|374_1  68 ACIRwRDDRDFILAAVHKNGLALEHASEE-LQND 100
                5555145668****************955.5543 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.17
  TIGR00672 216 qsdnsfvllatqrnlltlnrasaeei 241
                q d  +v+ a + + l+l+ as ee+
  MMETSP1061-20121228|374_1 123 QNDRDIVMAAVKNDGLALEYAS-EEL 147
                7888899999999999999987.445 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0    0.0064       6.5      70      97 ..       3      30 ..       1      46 [. 0.80
   2 ?    7.0   0.0   0.00053      0.54      65      99 ..      98     132 ..      80     146 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0064
  TIGR02991 70 vvaastGnhGralayaakkegvravicm 97
               +v a+  n Gral ya++  +    i +
  MMETSP1061-20121228|374_1  3 IVMAAVKNNGRALQYASEDLQNDRDIVI 30
               7889999*********998776555554 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00053
  TIGR02991  65 eraaGvvaastGnhGralayaakkegvravicmse 99 
                ++ + +v a+  n Gral +a++  +    i m++
  MMETSP1061-20121228|374_1  98 QNDRNIVMAAVKNDGRALQHASEDLQNDRDIVMAA 132
                56788999**************9999888888876 PP

>> TIGR02852  spore_dpaB: dipicolinic acid synthetase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.16   1.6e+02     103     129 ..      12      38 ..       4      47 .. 0.70
   2 ?    3.8   0.0    0.0065       6.7     100     131 ..      84     115 ..      75     119 .. 0.80
   3 ?    9.1   0.2   0.00016      0.16      96     132 ..     105     141 ..      99     147 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.16
  TIGR02852 103 spvlmaakatlrnnkPvvlaistndal 129
                   l  a   l+n++ +v+a    + l
  MMETSP1061-20121228|374_1  12 GRALQYASEDLQNDRDIVIAAVNKNEL 38 
                555667788899999998876655555 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0065
  TIGR02852 100 itdspvlmaakatlrnnkPvvlaistndalGl 131
                +++   l  a  +l+n++ +v+a   nd+  l
  MMETSP1061-20121228|374_1  84 HKNGLALEHASEELQNDRNIVMAAVKNDGRAL 115
                5555566778899***************9776 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00016
  TIGR02852  96 lanaitdspvlmaakatlrnnkPvvlaistndalGln 132
                +a   +d   l  a   l+n++ +v+a   nd+l l+
  MMETSP1061-20121228|374_1 105 MAAVKNDGRALQHASEDLQNDRDIVMAAVKNDGLALE 141
                567789999999**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 504.27
//
Query:       MMETSP1061-20121228|372_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   14.2   0.7      0.048   10.9   0.0    2.1  2  TIGR01204 bioW: 6-carboxyhexanoate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR01204  bioW: 6-carboxyhexanoate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   1.2e-05     0.048      28      96 ..       8      72 ..       2      88 .. 0.89
   2 ?    1.3   0.1      0.01        42     120     157 ..     133     168 ..     125     177 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.2e-05
  TIGR01204 28 nkakshsrgeadflqikvekvkdeeivklqplkistievsspeearklarklltkeGvskevaekavel 96
               nk+ + sr ++ +l+ ++ek       + + l is ++ +  + a+k++r++ +k G  k+ ++k ++ 
  MMETSP1061-20121228|372_1  8 NKSYTNSRSKPPMLNTHFEKTL----EMCNALTISINDNNIKDTANKITRTKTKKRGTCKQQQQKPIRK 72
               788889*************976....6789999*************************99999987654 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.01
  TIGR01204 120 dkekGvrvsrldWkdakkktekllkvgytervkealal 157
                 k  Gvr +++d + +  ++  l +v +++++ +a+  
  MMETSP1061-20121228|372_1 133 IKTSGVRFVKVDSETQ--RWYELNDVQAHQKIGHAIRD 168
                5789*******98776..89999999999999888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1740.30
//
Query:       MMETSP1061-20121228|377_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       299  (0.0728913); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.40
# Mc/sec: 1207.70
//
Query:       MMETSP1061-20121228|379_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1061-20121228|380_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.22
# Mc/sec: 227.98
//
Query:       MMETSP1061-20121228|385_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 533.70
//
Query:       MMETSP1061-20121228|388_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33    8.9   5.9       0.66    7.9   0.5    2.4  2  TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
          3    4.9   8.5        1.1    6.4   1.4    2.0  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01837  PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.1    0.0081        17      48      84 ..      35      71 ..       2      76 .. 0.72
   2 ?    7.9   0.5   0.00032      0.66      48      84 ..      79     115 ..      62     119 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0081
  TIGR01837 48 ksvdalreevktkleqvrdkvqrnldklekafderve 84
               ++ +++ e v+t +e++  ++   +d  e+a+++ ve
  MMETSP1061-20121228|388_1 35 DAQEEAEETVETPVEEASVEAIAAIDAQEEAVETPVE 71
               3456666788888888888888888888888877766 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00032
  TIGR01837  48 ksvdalreevktkleqvrdkvqrnldklekafderve 84 
                 ++da +e v+t +e++ d+ +  ++ le+ ++  v 
  MMETSP1061-20121228|388_1  79 AAIDAQQETVETPVEEANDEETEAIGALEETVESPVA 115
                245666699*********************9998776 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.7    0.0058        12      73     110 ..       8      45 ..       3      55 .. 0.80
   2 ?    6.4   1.4   0.00052       1.1      73     115 ..      54      98 ..      44     116 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0058
  TIGR01983  73 evtgiDlseelievAklhakkdplkkieyelksveela 110
                e+ +iD+ e+++e+  + a+ +++++i+ + ++ e+++
  MMETSP1061-20121228|388_1   8 EIAAIDAQEKAVETPVEEADDEEIAAIDAQEEAEETVE 45 
                6899********************99997766555543 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00052
  TIGR01983  73 e.vtgiDlseelievAklhakkdplkkieyelksveelaeee.ke 115
                e + +iD+ ee++e+  + ++ +++++i+ ++++ve+ +ee+ +e
  MMETSP1061-20121228|388_1  54 EaIAAIDAQEEAVETPVEESNDEEIAAIDAQQETVETPVEEAnDE 98 
                34889******************************9976664144 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.20s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 499.08
//
Query:       MMETSP1061-20121228|392_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.11s 00:00:00.18 Elapsed: 00:00:00.23
# Mc/sec: 183.64
//
Query:       MMETSP1061-20121228|395_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 488.85
//
Query:       MMETSP1061-20121228|403_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|406_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|409_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.60
# Mc/sec: 191.38
//
Query:       MMETSP1061-20121228|408_1  [L=815]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.43
# Mc/sec: 2501.65
//
Query:       MMETSP1061-20121228|401_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 1106.19
//
Query:       MMETSP1061-20121228|416_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    9.9   9.4       0.54    7.7   6.5    1.9  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
       0.15    9.7   9.1       0.58    7.8   6.3    1.8  1  TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication
        1.2    7.0   6.9        2.3    6.0   4.8    1.6  1  TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
        2.7    6.1  12.4         16    3.7   0.3    3.0  2  TIGR00807 malonate_madL: malonate transporter, MadL subunit
        3.9    5.4  12.6    1.7e+02    0.1   8.7    2.6  1  TIGR00880 2_A_01_02: multidrug resistance protein
        5.5    4.0   9.0         16    2.5   6.2    1.8  1  TIGR03624 TIGR03624: putative hydrolase


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   6.5   0.00079      0.54      45      77 ..      10      42 ..       1      59 [. 0.84

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00079
  TIGR03789 45 iGlgsGallGavVgGPvGaiiggitGgligqav 77
               +G   G +lG++ g  +Ga++g++ G+l+g+ +
  MMETSP1061-20121228|416_1 10 LGTMLGTMLGTMLGTSLGALLGTMLGTLLGTML 42
               566779999999999999999999999998765 PP

>> TIGR03082  Gneg_AbrB_dup: membrane protein AbrB duplication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   6.3   0.00084      0.58       2      45 ..       6      49 ..       1      59 [. 0.83

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00084
  TIGR03082  2 lllllvslagglllsllglPaawllgpllaaavlslaggleiel 45
               l ++l +++g +l+++lg  +++llg++l +++ +++g le el
  MMETSP1061-20121228|416_1  6 LGTMLGTMLGTMLGTMLGTSLGALLGTMLGTLLGTMLGILEGEL 49
               56889999999999999999999999999999988888877765 PP

>> TIGR03750  conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   4.8    0.0034       2.3      32      66 ..       5      39 ..       1      59 [. 0.53

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0034
  TIGR03750 32 vlglvlglllalllgswaliptgallgvilvvlig 66
               +lg++lg +l ++lg+++    gallg +l+ l g
  MMETSP1061-20121228|416_1  5 MLGTMLGTMLGTMLGTMLGTSLGALLGTMLGTLLG 39
               44444444444444444444444444444443333 PP

>> TIGR00807  malonate_madL: malonate transporter, MadL subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   5.6      0.15     1e+02      11      18 ..      26      33 ..       1      47 [. 0.49
   2 ?    3.7   0.3     0.024        16      13      28 ..      44      59 ..      40      60 .] 0.67

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.15
  TIGR00807 11 vctlvGvv 18
                  l+G +
  MMETSP1061-20121228|416_1 26 LGALLGTM 33
               22334444 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.024
  TIGR00807 13 tlvGvvvGdllGvalG 28
                l G ++G++lG +lG
  MMETSP1061-20121228|416_1 44 ILEGELLGSMLGTLLG 59
               4567777777777776 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   8.7      0.25   1.7e+02      89     113 ..      18      41 ..       1      60 [] 0.63

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.25
  TIGR00880  89 lgllsagialgpilGpllGavlaqa 113
                lg  ++g++lg++lG +lG++l+++
  MMETSP1061-20121228|416_1  18 LG-TMLGTSLGALLGTMLGTLLGTM 41 
                22.2345555555555555555554 PP

>> TIGR03624  TIGR03624: putative hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   6.2     0.023        16      92     118 ..      14      40 ..       1      60 [] 0.47

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.023
  TIGR03624  92 agalmgalggaatgaqlGavlgfLake 118
                +g+++g++ g+ +ga lG +lg L   
  MMETSP1061-20121228|416_1  14 LGTMLGTMLGTSLGALLGTMLGTLLGT 40 
                233333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 273.08
//
Query:       MMETSP1061-20121228|415_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-16   55.4   0.3    0.00056   17.5   0.0    4.1  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0     2e-06    0.0082      13      26 .]       2      15 ..       1      15 [. 0.87
   2 !   17.5   0.0   1.4e-07   0.00056       1      25 [.      16      39 ..      16      40 .. 0.95
   3 !   15.3   0.0   6.6e-07    0.0027       1      26 []      41      65 ..      41      65 .. 0.96
   4 !    4.8   0.0    0.0013       5.4       1      21 [.      66      85 ..      66      86 .] 0.82

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2e-06
  TIGR02167 13 lSnfdTsnVTnMss 26
               +  +d+s+V++Ms+
  MMETSP1061-20121228|415_1  2 INEWDVSQVNDMSY 15
               556*********97 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.4e-07
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
               MF++  ++++ ++S +d+s+V++ s
  MMETSP1061-20121228|415_1 16 MFRSARAFNQ-PISEWDVSQVNDTS 39
               9*********.***********976 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 6.6e-07
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMss 26
               MF++  ++++ ++  +d+s+V +M s
  MMETSP1061-20121228|415_1 41 MFFYAPAFNQ-PINEWDVSQVVDMES 65
               **********.*************75 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.0013
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnV 21
               MF+   ++++ ++  +d+s+V
  MMETSP1061-20121228|415_1 66 MFRLARAFNQ-PINEWDVSQV 85
               6777777888.8999*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 540.53
//
Query:       MMETSP1061-20121228|417_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 487.79
//
Query:       MMETSP1061-20121228|425_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 472.38
//
Query:       MMETSP1061-20121228|429_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1061-20121228|421_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.47
# Mc/sec: 974.47
//
Query:       MMETSP1061-20121228|423_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-233  773.2  26.1   2.7e-233  773.0  18.1    1.0  1  TIGR02348 GroEL: chaperonin GroL
    5.1e-25   85.8   8.1    3.6e-18   63.2   0.5    2.2  2  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    1.9e-24   84.1  22.1    2.4e-17   60.7   3.4    3.0  3  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
    1.4e-23   81.1   6.5    7.2e-15   52.3   0.2    2.1  2  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
      4e-23   79.3   6.1    4.6e-15   52.7   0.4    2.3  2  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    9.2e-23   78.5  10.0    4.5e-18   63.0   1.5    2.3  2  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    1.8e-20   70.9  14.1    1.9e-13   47.7   0.6    3.0  3  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    1.4e-17   61.2   8.4    3.5e-11   40.1   0.4    2.2  2  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    4.2e-16   56.6  12.4    1.4e-10   38.3   1.0    3.1  3  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
      2e-15   54.1   5.9    3.9e-11   39.9   0.1    3.0  3  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit


Domain annotation for each model (and alignments):
>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  773.0  18.1  6.6e-236  2.7e-233       1     526 []      28     556 ..      28     556 .. 0.99

  Alignments for each domain:
  == domain 1    score: 773.0 bits;  conditional E-value: 6.6e-236
  TIGR02348   1 akeikfdeearkalekGvdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkeeiaqvatisanndeeiGeliaeamekvgkdGvitveesksletelevveGmqfdrGyvspyfvtdaekmevelenplilitdkkisavkdllPllekvaksgkplliiaedvegealatlvvnklrgvlkvaavkaPgfGdrrkamlediailtggqviseelglkleevtleklGkakkvtvdkdettivegagekeaikerveqikaqieetesdydkeklqerlaklaGGvavikvGaatetelkekkarvedalnatraaveeGivaGGGvallraaekleelkekse..dekvGveivkraleaPlrqiaenaGkdgavvvekvkek.kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavvadkpee 526
                +keikf  + r+++  Gv++ladav+vtlGPkgrn ++ + +GaPkitkdGvtvak+i++ed+fe++Ga+l+k vasktnd+aGdGtttatvla+ai++eG k+vaaG np +l+rGi+ av++vve+l++ s+++++keeiaqv+tisan+d e+G+lia+ame+vgk+Gvitv+++k+l++elev+eGm+f+rG++spyf+tda++++++le+p+il+++kk+s++++l+P+le+v+ks  +lliiaedve+ealatlvvnklr+ +kv+avkaPgfGd rka ++d+a+ltgg+visee+g+kle++t e+lG+ kk++vdk++t+++ g+g++e iker+e ik+ ie+t+sdy++eklqerlakl+GGvavi+vG a+e+e+ ekk+rv dalnatraaveeGiv+GGG all++++kle++k++++  d+++Gv+iv++al+aP++qia+naG +gavvv +++++ +  e+Gf+a+++ y+d+++aGiidp+kvtr+++ +aas+agll t+ea+++dkp+e
  MMETSP1061-20121228|423_1  28 SKEIKFGVDGRNSMLVGVNTLADAVQVTLGPKGRNAIIAQPYGAPKITKDGVTVAKSIDFEDPFEDMGAQLIKSVASKTNDIAGDGTTTATVLARAIYSEGCKAVAAGLNPQDLRRGINMAVDTVVETLTEISRPITSKEEIAQVGTISANTDVEVGNLIADAMERVGKEGVITVQDGKTLDDELEVIEGMKFERGFISPYFITDAKTQKCVLEDPHILLVEKKVSSLQQLVPVLESVIKSQGSLLIIAEDVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATMQDLALLTGGTVISEETGMKLESTTPEQLGRCKKIEVDKNNTIVLGGSGDSEGIKERCELIKHSIETTKSDYEREKLQERLAKLSGGVAVIRVGGASEVEVGEKKDRVVDALNATRAAVEEGIVPGGGKALLHCSTKLEAVKKNAKnmDQQIGVDIVMKALQAPMKQIATNAGAEGAVVVGHLTKEdTPIEQGFDAQNGVYTDMYAAGIIDPTKVTRTGIVDAASVAGLLTTSEAMIVDKPQE 556
                69****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************88776657*********************************9987725689*************************************************986 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.5   8.9e-21   3.6e-18      10     176 ..      37     207 ..      29     225 .. 0.86
   2 !   26.4   1.0   1.3e-09   5.3e-07     364     502 ..     401     538 ..     389     551 .. 0.87

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 8.9e-21
  TIGR02342  10 vrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpa....akllvel.skaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdlsdrealiksattslsskvvsqyssllaplavdavlkvidsek 176
                 r+s +v  +++ada++ +lGpkG + +i +  G   it dG t+ k ++   p     a+l+ ++ sk++di aGdGtt+  vla a+ +   k ++ g+ p+ +  ++++a+d  ++ l+e+s+p+  +++ a + ++++  +  v    ++ +  +  + v+ v+d+++
  MMETSP1061-20121228|423_1  37 GRNSMLVGVNTLADAVQVTLGPKGRNAIIAQPYGAPKITKDGVTVAKSIDFEDPFedmgAQLIKSVaSKTNDI-AGDGTTTATVLARAIYSEGCKAVAAGLNPQDLRRGINMAVDTVVETLTEISRPITSKEEIAQVGTISANTDVEVGNLIADAMERVGKEGVITVQDGKT 207
                589999**********************************************996222366666663556665.9***************9999999*******************************99988888887777777888888899999999999999999854 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.3e-09
  TIGR02342 364 vsvl.vrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyi.vrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlase 502
                v+v+ v G+ ++ ++e +  + dal   r+ v++ ++++GGG   +  ++kl    ++ k +++ i v    +al+     +a naG +   vv +l ++  +   ++G + ++g  td++   ++ p+ vt++ +  a+ 
  MMETSP1061-20121228|423_1 401 VAVIrVGGASEVEVGEKKDRVVDALNATRAAVEE-GIVPGGGKALLHCSTKLEAVKKNAKNMDQQIgVDIVMKALQAPMKQIATNAGAEGAVVVGHLTKE--DTPIEQGFDAQNGVYTDMYAAGIIDPTKVTRTGIVDAAS 538
                4444277999999***9999**********9965.89*****************9999999987774777899***9999*****************876..556889************************999877764 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   3.4   5.9e-20   2.4e-17      14     152 ..      34     174 ..      27     220 .. 0.84
   2 ?    3.7   0.3     0.011       4.6     312     414 ..     310     415 ..     298     417 .. 0.72
   3 !   29.5   4.1   1.7e-10   6.9e-08     367     512 ..     401     544 ..     376     553 .. 0.83

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 5.9e-20
  TIGR02339  14 grdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehP....aakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedkellkkvae 152
                g d ++s +  ++++a+av+ tlGP+G + ++ ++ G   it DG+t+ k +d e+P    +a+l+  va   ++ +gDGttta vla ++ +++ + +  ++ P  + +G ++a ++ +e++ ei+  i+ ++   + +v +
  MMETSP1061-20121228|423_1  34 GVDGRNSMLVGVNTLADAVQVTLGPKGRNAIIAQPYGAPKITKDGVTVAKSIDFEDPfedmGAQLIKSVASKTNDIAGDGTTTATVLARAIYSEGCKAVAAGLNPQDLRRGINMAVDTVVETLTEISRPITSKE--EIAQVGT 174
                66777777888999*****************************************9966667999*****************************************************************9875..3334433 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.011
  TIGR02339 312 kksDieklaratGakivss.....lkeieesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRa.leDalkvvksvledgkvvaGgGavevela 414
                +k  ++ la  tG+ ++s+     l++ ++++LG+ + +e +k +   l    + +  k    l++ + e    + eR  l++ l  +       +v+  gGa+eve+ 
  MMETSP1061-20121228|423_1 310 RKATMQDLALLTGGTVISEetgmkLESTTPEQLGRCKKIEVDKNNTIVLGGSGDSEGIKERCELIKHSIETTKSDYEREkLQERLAKLSGG---VAVIRVGGASEVEVG 415
                6788999**********85444448999******999999887643333333344555666789999999999999984366655544443...457777888888886 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 1.7e-10
  TIGR02339 367 vtil.lrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieG.reqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlil 512
                v+++ + G +e  v e    + Dal++ ++++e+g +v+GgG   +  +++l    ++ +   +q+ v+   +al +  + +a naG +   ++ +l ++      ++ g d ++g  +dm+++g+i+p kv +  i  a+ +a l+ 
  MMETSP1061-20121228|423_1 401 VAVIrVGGASEVEVGEKKDRVVDALNATRAAVEEG-IVPGGGKALLHCSTKLEAVKKNAKNmDQQIGVDIVMKALQAPMKQIATNAGAEGAVVVGHLTKEDT---PIEQGFDAQNGVYTDMYAAGIIDPTKVTRTGIVDAASVAGLLT 544
                5555255667777999999999**********987.89***********99987777766514789***********************9988888876544...79*************************9999988888887665 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.2   1.7e-17   7.2e-15      24     198 ..      44     222 ..      37     228 .. 0.86
   2 !   31.3   1.0   4.1e-11   1.7e-08     377     515 ..     406     542 ..     399     555 .. 0.88

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 1.7e-17
  TIGR02347  24 aakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhP....tasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtklea..eladklteivvdavlaikkdeee.idlfmveilemkh 198
                + ++l+d ++  lGPkG   ++ +  G+ k+tkdG ++ k +   +P     a+li  +a+  +di+GdGtt++ +l+ ++     + ++ gl P+ l  G+++a ++++e l ++    +  + +e + +v   s  t +e    +ad +  +  + v ++++ ++   +l ++e +++++
  MMETSP1061-20121228|423_1  44 GVNTLADAVQVTLGPKGRNAIIAQPYGAPKITKDGVTVAKSIDFEDPfedmGAQLIKSVASKTNDIAGDGTTTATVLARAIYSEGCKAVAAGLNPQDLRRGINMAVDTVVETLTEI---SRPITSKEEIAQVGTISANTDVEVgnLIADAMERVGKEGVITVQDGKTLdDELEVIEGMKFER 222
                567899**************************************99955545999************************************************************9...344567888999999999998775215778888888899999987665326688999888766 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 4.1e-11
  TIGR02347 377 ikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGk.aklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasq 515
                + g+ + ++   kd v d l a + a+e +++v+G g   + +++kl+  kk++k   +++gv+++ +al    k ++ n+G +   v+ +l++e +     +g d + g  ++   +gi d  +v +  +  a+ +a  
  MMETSP1061-20121228|423_1 406 VGGASEVEVGEKKDRVVDALNATRAAVE-EGIVPGGGKALLHCSTKLEAVKKNAKNMdQQIGVDIVMKALQAPMKQIATNAGAEGAVVVGHLTKEDTPI--EQGFDAQNGVYTDMYAAGIIDPTKVTRTGIVDAASVAGL 542
                667888999999***********99997.5799******************999975278***********999**********999999999887766..89**************************99999988854 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.4   1.1e-17   4.6e-15      27     183 ..      45     206 ..      29     238 .. 0.83
   2 !   29.2   0.4   1.5e-10   6.1e-08     368     507 ..     402     540 ..     376     554 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 1.1e-17
  TIGR02345  27 cvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhP....aakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalss.kliaeekeffskmvvdavlsld 183
                ++++a++++ tlGP+G + +i++    + ++ dG t+ k +d   P     a+l+  +a   ++  GdGtt+ +vla  + +e  + +  gl+pq + r+++ a+  ++e l ei+  ++ +k+e  +v    a+t ++   lia+  e   k  v +v+  +
  MMETSP1061-20121228|423_1  45 VNTLADAVQVTLGPKGRNAIIAQPYGaPKITKDGVTVAKSIDFEDPfedmGAQLIKSVASKTNDIAGDGTTTATVLARAIYSEGCKAVAAGLNPQDLRRGINMAVDTVVETLTEISRPIT-SKEEIAQVGTISANTDVEVgNLIADAMERVGKEGVITVQDGK 206
                67899*****************998879****************9944434778888888888889*****************************************************9.777778888888888886426677777777665555555444 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 1.5e-10
  TIGR02345 368 tlilrGgaeqf.leeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgk.qqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkkn.alkaatea 507
                ++i  Gga ++ + e +  + da+   r a+ ++ iv+GGG   l+ s  l+   k+ ++  qq+ ++ v kal++  +++a naG +   ++ +l k+ +      +G d ++   +d+ +a + +P+ v +  +++aa+ a
  MMETSP1061-20121228|423_1 402 AVIRVGGASEVeVGEKKDRVVDALNATRAAV-EEGIVPGGGKALLHCSTKLEAVKKNAKNMdQQIGVDIVMKALQAPMKQIATNAGAEGAVVVGHLTKEDTP---IEQGFDAQNGVYTDMYAAGIIDPTKVTRTgIVDAASVA 540
                445557777765788888999***9988877.578****************9988887765166779*****************************987766...899********************998665155555544 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   1.5   1.1e-20   4.5e-18      24     205 ..      33     216 ..      27     224 .. 0.85
   2 !   19.7   0.8   1.4e-07   5.8e-05     378     510 ..     401     531 ..     370     552 .. 0.82

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 1.1e-20
  TIGR02343  24 kGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeei....akllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlik 205
                 G++  +s ++ ++++a  ++ +lGpkG + i+ ++ g   +t dG t+ +++d +++     a+l+  ++   ++  GdGtt+  vla a+  +  k +  G+ p  +  G ++a+++ ve l ei+  i+ +e+  +    +a+t     + +   + + ++  + v++v d +  d ++++i+
  MMETSP1061-20121228|423_1  33 FGVDGRNSMLVGVNTLADAVQVTLGPKGRNAIIAQPYGAPKITKDGVTVAKSIDFEDPFedmgAQLIKSVASKTNDIAGDGTTTATVLARAIYSEGCKAVAAGLNPQDLRRGINMAVDTVVETLTEISRPITSKEEIAQVGTISANT--DVEVGNLIADAMERVGKEGVITVQDGKTLDDELEVIE 216
                599999*************************************************99772222344444444445556*****************************************************9977666554444444..45678888999999***********999999999885 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.4e-07
  TIGR02343 378 vt.ilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqy.airafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkq 510
                v+ i v G++++ + e k  + dal + r  ++ + iv GGG a + cs  +e+  ++ + ++q+  +    +al+     +a n+G +   ++ ++ +   +++  + G d ++   +dm    ++++    + 
  MMETSP1061-20121228|423_1 401 VAvIRVGGASEVEVGEKKDRVVDALNATRAAVE-EGIVPGGGKALLHCSTKLEAVKKNAKNMDQQiGVDIVMKALQAPMKQIATNAGAEGAVVVGHLTK---EDTPIEQGFDAQNGVYTDMYAAGIIDPTKVTRT 531
                4414588999********************996.579*****************9999999987626888999**998889*******99888877765...566778899999999999999999988765555 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.6   4.7e-16   1.9e-13      14     136 ..      36     160 ..      28     247 .. 0.88
   2 ?    1.5   0.0     0.046        19     310     341 ..     313     349 ..     290     372 .. 0.78
   3 !   27.9   2.3   4.8e-10     2e-07     361     516 ..     401     554 ..     387     557 .. 0.82

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 4.7e-16
  TIGR02341  14 narlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnp....aakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksa 136
                + r s +vg  ++ d v+ tlgpkg + i+      ++ ++t dg t+ ksi  ++p     a+++  ++   +d  gdgtt+ tvla  +  e  k v++ + pq +  g  +a+++  e+l++ +
  MMETSP1061-20121228|423_1  36 DGRNSMLVGVNTLADAVQVTLGPKGRNAIIAQP--YGAPKITKDGVTVAKSIDFEDPfedmGAQLIKSVASKTNDIAGDGTTTATVLARAIYSEGCKAVAAGLNPQDLRRGINMAVDTVVETLTEIS 160
                5688999********************998654..46899************988773333688888888889999**********************************************99866 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.046
  TIGR02341 310 gverlalvtggeivs.....tfdepelvklgscdlie 341
                 ++ lal+tgg ++s      +++    +lg+c++ie
  MMETSP1061-20121228|423_1 313 TMQDLALLTGGTVISeetgmKLESTTPEQLGRCKKIE 349
                56789********9944322356677789******98 PP

  == domain 3    score: 27.9 bits;  conditional E-value: 4.8e-10
  TIGR02341 361 activlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmak...aveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniikaap 516
                   i + ga++  + e +  + dal      v+e  +v ggg a l  +    av+++a+++   + + v+   kal+     +a nag + a +v +l  +  +   + g+d ++g  +d+ + gi++  k+ r+ +  aa  a +l   + +i  +p
  MMETSP1061-20121228|423_1 401 VAVIRVGGASEVEVGEKKDRVVDALNATRAAVEEG-IVPGGGKALLHCSTkleAVKKNAKNM--DQQIGVDIVMKALQAPMKQIATNAGAEGAVVVGHLTKE--DTPIEQGFDAQNGVYTDMYAAGIIDPTKVTRTGIVDAASVAGLLTTSEAMIVDKP 554
                445667799999999999999****9988888765.78999999888876122455555544..46799999******9999****************9765..667889**************************99999999999988888877766 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.4   8.5e-14   3.5e-11      22     192 ..      42     214 ..      27     247 .. 0.86
   2 !   24.9   1.3   3.5e-09   1.4e-06     374     513 ..     407     543 ..     394     552 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 8.5e-14
  TIGR02344  22 iqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahp....aakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdi 192
                +   +++ad ++ tlGpk    ++ +p G+  +t dG ++ + id + p     a+ +  ++   ++  GdGtt+  +la  + ++  + +   + p  + r+ + a++ ++++l e+s p+  ++e +    +++     + +  +d +  +  + v tv+  ++   +le  +
  MMETSP1061-20121228|423_1  42 LVGVNTLADAVQVTLGPKGRNAIIAQPYGAPKITKDGVTVAKSIDFEDPfedmGAQLIKSVASKTNDIAGDGTTTATVLARAIYSEGCKAVAAGLNPQDLRRGINMAVDTVVETLTEISRPITSKEEIAQVGTISANTDVEVGNLIADAMERVGKEGVITVQDGKTLDDELE--V 214
                5556799****************************************9944433555556777777788********************************************************99999999999999999999999999999999999998875555444..3 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 3.5e-09
  TIGR02344 374 rGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveq.lpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavll 513
                 Gas   + e +  + dal+ +r  + e  +vpGGG + l+ s+kl+  +k+ ++++q + +  v +al++  + ++ n+G++    + +l       +  + G d ++G  +dm  +gi +p+ v    i  a   a ll
  MMETSP1061-20121228|423_1 407 GGASEVEVGEKKDRVVDALNATRAAV-EEGIVPGGGKALLHCSTKLEAVKKNAKNMDQqIGVDIVMKALQAPMKQIATNAGAEGAVVVGHLTKED---TPIEQGFDAQNGVYTDMYAAGIIDPTKVTRTGIVDAASVAGLL 543
                4555555778888899****999876.5669****************99999888865156899********************99999997544...45689**********************9988887777776665 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   1.0   3.5e-13   1.4e-10       8     130 ..      32     158 ..      26     196 .. 0.87
   2 ?    1.7   0.1     0.042        17     308     351 ..     310     352 ..     279     366 .. 0.84
   3 !   22.6   0.5     2e-08   8.1e-06     369     505 ..     402     528 ..     393     556 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 3.5e-13
  TIGR02340   8 ksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehP....aakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyike 130
                k G d r+  ++ v ++a++v+ +lGP G + ++    G   it dG t+ k ++ e+P     a+++  +a++ +   GdGtt+  +la ++  ++ + v+  + P  +  G ++a+   v+ ++e
  MMETSP1061-20121228|423_1  32 KFGVDGRNSMLVGVNTLADAVQVTLGPKGRNAIIAQPYGAPKITKDGVTVAKSIDFEDPfedmGAQLIKSVASKTNDIAGDGTTTATVLARAIYSEGCKAVAAGLNPQDLRRGINMAVDTVVETLTE 158
                667788888899999******************************************995544578888999999999***************************************9988877665 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.042
  TIGR02340 308 kkedlkriakatGatlvssladleGeetleasllGeaeevveer 351
                +k  ++ +a  tG+t++s  + ++ e t  + +lG +++++ ++
  MMETSP1061-20121228|423_1 310 RKATMQDLALLTGGTVISEETGMKLESTT-PEQLGRCKKIEVDK 352
                6888999************9999987665.569*****998664 PP

  == domain 3    score: 22.6 bits;  conditional E-value: 2e-08
  TIGR02340 369 asiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsr.eqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavs 505
                a i + Ga +v + e +  + dal + + ++e   +v+GgG      s +le + +  ++  +q+ +    +al +  k++a+na+ + + +v +l              +    G+d +ng+ +d   aG+++P+  
  MMETSP1061-20121228|423_1 402 AVIRVGGASEVEVGEKKDRVVDALNATRAAVEE-GIVPGGGKALLHCSTKLEAVKKNAKNMdQQIGVDIVMKALQAPMKQIATNAGAEGAVVVGHLTKE--D--------TPIEQGFDAQNGVYTDMYAAGIIDPTKV 528
                5566789*******************9999995.699****************9988766516799999*********************999998532..2........223469*******************743 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.1   9.4e-14   3.9e-11      28     140 ..      46     162 ..      40     189 .. 0.89
   2 ?    0.6   0.0     0.076        31     324     345 ..     330     351 ..     322     358 .. 0.85
   3 !   14.5   0.5   4.8e-06     0.002     367     522 ..     404     555 ..     391     564 .. 0.81

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 9.4e-14
  TIGR02346  28 kelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhP....aakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvl 140
                  l++ ++ +lGP+g+n ++        +t+D +t+ + ++ + P     a+l++ ++ + +   GDgt  + vla ++ ++  + +  Gl+p+++ +G ++a+++++e+L e++  
  MMETSP1061-20121228|423_1  46 NTLADAVQVTLGPKGRNAIIAQPYGAPKITKDGVTVAKSIDFEDPfedmGAQLIKSVASKTNDIAGDGTTTATVLARAIYSEGCKAVAAGLNPQDLRRGINMAVDTVVETLTEISRP 162
                6789999*************************************94444489999999999999************************************************99753 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.076
  TIGR02346 324 alvrlsapspeelGlvdsvkve 345
                + ++l++ +pe+lG +++++v 
  MMETSP1061-20121228|423_1 330 TGMKLESTTPEQLGRCKKIEVD 351
                5689***************986 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 4.8e-06
  TIGR02346 367 ivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleq.yaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiimakpa 522
                i + G+ +  + +    + D +n+ +a+v +  ++pG+g + ++ ++kl+ + ++ k+++q   +    +a ++  + +a naG +   v+ +L  ++     ++g d +++    +d+  + i D  +  +  i  a+  a  +   + +i+ kp 
  MMETSP1061-20121228|423_1 404 IRVGGASEVEVGEKKDRVVDALNATRAAVEE-GIVPGGGKALLHCSTKLEAVKKNAKNMDQqIGVDIVMKALQAPMKQIATNAGAEGAVVVGHLTKED--TPIEQGFDAQNGVY--TDMYAAGIIDPTKVTRTGIVDAASVAGLLTTSEAMIVDKPQ 555
                555566666666666667799******9976.59*************************862679*****************************9888..45788998888887..79999999999888888887777776666666667777764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.49
# Mc/sec: 1546.16
//
Query:       MMETSP1061-20121228|430_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.47
# Mc/sec: 617.82
//
Query:       MMETSP1061-20121228|440_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 1718.35
//
Query:       MMETSP1061-20121228|441_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 432.38
//
Query:       MMETSP1061-20121228|442_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|443_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          3    5.5  10.6        0.2    9.4   3.9    1.5  2  TIGR01144 ATP_synt_b: ATP synthase F0, B subunit


Domain annotation for each model (and alignments):
>> TIGR01144  ATP_synt_b: ATP synthase F0, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.18   7.3e+02      80      80 ..      25      25 ..       6      49 .. 0.51
   2 ?    9.4   3.9   4.8e-05       0.2      21      72 ..      57     109 ..      52     114 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.18
  TIGR01144 80 e 80
               +
  MMETSP1061-20121228|443_1 25 T 25
               1 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 4.8e-05
  TIGR01144  21 ikvletRqekIaddlasaekakkelalaqkk.aqellkeakeeaaeiienAnk 72 
                i+++++ qe ++  l++a+ ++ e+ +aq++ ++  + ea ++a++ i++ ++
  MMETSP1061-20121228|443_1  57 IAAIDAQQEAVETPLEEANDEETEAIDAQQEtVETPVAEASAKATDAIDAKEE 109
                789*****************9999999877626778**********9986554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 493.89
//
Query:       MMETSP1061-20121228|449_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-10   38.3   1.0    0.00011   19.7   0.1    3.1  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00011      0.46      13      26 .]       7      20 ..       2      20 .. 0.84
   2 !   19.7   0.1   2.7e-08   0.00011       1      25 [.      21      44 ..      21      45 .. 0.98
   3 !    8.4   0.0   9.8e-05       0.4       1      20 [.      46      64 .]      46      64 .] 0.96

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00011
  TIGR02167 13 lSnfdTsnVTnMss 26
               +  +d+s+V +M s
  MMETSP1061-20121228|449_1  7 INEWDVSQVVDMES 20
               677*********75 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 2.7e-08
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
               MF++  ++++ ++  +++s+V++Ms
  MMETSP1061-20121228|449_1 21 MFRSARAFNQ-PINEWNVSQVNDMS 44
               9*********.*************8 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 9.8e-05
  TIGR02167  1 MFsgCssLtsLDlSnfdTsn 20
               MF+  s++++ ++  +d+s+
  MMETSP1061-20121228|449_1 46 MFYKASAFNQ-PINEWDVSQ 64
               **********.*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|454_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 911.92
//
Query:       MMETSP1061-20121228|451_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     6e-102  338.9   0.0   7.1e-102  338.7   0.0    1.0  1  TIGR01464 hemE: uroporphyrinogen decarboxylase
    1.6e-18   64.9   0.0    2.2e-18   64.4   0.0    1.1  1  TIGR01463 mtaA_cmuA: methyltransferase, MtaA/CmuA family


Domain annotation for each model (and alignments):
>> TIGR01464  hemE: uroporphyrinogen decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.7   0.0  3.5e-105  7.1e-102       2     337 ..      57     401 ..      56     402 .. 0.94

  Alignments for each domain:
  == domain 1    score: 338.7 bits;  conditional E-value: 3.5e-105
  TIGR01464   2 llkalkgekvdrvPvWlmRQaGRylpeYrelrekagdflelckdpdlavevtlqPlrrlgvDAaIlFsDIlvilealglelefeegkgpvleepireaedvkklkevd....vekeleyvleaikllreelee.evpliGFaGaPfTlasYlieGggskdlakakkflyeep....ealkaLlekltdatieYlseQvkaGadavqiFdswagaLseedfeefvlpylkkiieelkkr.ekvPvilfakgagelleelaetgadvvglDwsvdlkeaaklvkkkvalQGnldPavllaskealeekvekilealkegksryifNlGHGilpetppenvkalvelvh 337
                l++a++ge ++r+PvWl RQaGRy++ +r++ +k++ f+e +++pd+a+e++lq  r++g+D++I+FsDIl++l++lg+++++++g gpv+++ i ++ dv++l++vd    + ++l+++ e++ +l++e ee +++liGF+G+PfTla+Y ieG++sk++  +kk++++++    e+++ +l+k+++++ +Y  +Q++ Ga+++q+F+swa +Ls+++f++f++p+++k i+ +k++ ++vPvi+fa+g +++le  +++gad++++Dws+d++ea++++++++a+ Gn+dP++l+ ske +e++v++++++++   +r+++NlGHG++  tp+e+v  lv+ v+
  MMETSP1061-20121228|451_1  57 LVRAARGEITERTPVWLCRQAGRYMKAFRAYSTKYP-FRERSETPDMAIELSLQCHRKYGMDGIIMFSDILTPLPTLGIDFDVVPGIGPVISTEIACEGDVTALNTVDsvdtFDEKLPFIREILGQLSKEAEEkNTALIGFVGSPFTLAAYTIEGKSSKHCLDTKKLMMASErgddETMDLFLDKIATMIGHYACHQIECGAQVIQLFESWAHQLSPKHFADFAKPAAQKAISIIKEKhPDVPVIYFANGGSSYLELQRDMGADMIAIDWSIDMAEARRILGPDIAVSGNIDPTILFGSKEQIEQAVRDCIDKAGGPGNRHLLNLGHGVMQGTPEEAVGWLVDEVK 401
                689********************************9.*******************************************************************99651112467899999***999998876589****************************999887542333789999*******************************************************955***************************************************************************9779************************997 PP

>> TIGR01463  mtaA_cmuA: methyltransferase, MtaA/CmuA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   1.1e-21   2.2e-18      48     336 ..      99     401 ..      53     404 .. 0.78

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 1.1e-21
  TIGR01463  48 daeamAklaiaayevvGleavrlpfdltveaEvlgCeldagkkkrPsvvksPa.pknladlevkenlllkegripvvleaikilreky.gdelpiigslegPitlAsqligvee.........flkyl.stdpdlakavlelaadiviayaklmveaGadviailDPvaSsdllspetykefvlpyqkklvaeikeid.svtvlHiCgktskilsdiaksGveglsvdekvgvaeakkvigdeislvGnldpvsvllnGtaekvkklakevleaGv.....divapgCdiasmtpleNlkalveack 336
                 +++  +l  + +++ G++ +++  d+ ++   lg + d+ +   P +  + a   +   l+  +     + + p + e   +l++   +++ ++ig +++P+tlA   i +++         ++  +   d++ ++ +l+  a +   ya  ++e Ga+vi+  +  a +  lsp  + +f+ p+ +k +  ike    v v+      s  l+   + G + + +d  +++aea++++g +i + Gn+dp   +l G  e++++  ++++++ +      ++  g ++  +tp+e +  lv+  k
  MMETSP1061-20121228|451_1  99 TPDMAIELSLQCHRKYGMDGIIMFSDILTPLPTLGIDFDVVPGIGPVISTEIAcEGDVTALNTVDSVDTFDEKLPFIREILGQLSKEAeEKNTALIGFVGSPFTLAAYTIEGKSskhcldtkkLMMASeRGDDETMDLFLDKIATMIGHYACHQIECGAQVIQLFESWAHQ--LSPKHFADFAKPAAQKAISIIKEKHpDVPVIYFANGGSSYLELQRDMGADMIAIDWSIDMAEARRILGPDIAVSGNIDPT--ILFGSKEQIEQAVRDCIDKAGgpgnrHLLNLGHGVMQGTPEEAVGWLVDEVK 401
                56677799999*****************************99999977653321233344444444445577788888888888766516789*************98887654222222222444441457788899999999999******************999865..9********************9965246677788888999**************************************96..556**************864313333699***********999988887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 1313.45
//
Query:       MMETSP1061-20121228|453_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-11   40.2   0.0    4.9e-11   40.0   0.0    1.1  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    5.7e-10   36.6   0.0      1e-09   35.8   0.0    1.4  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    1.8e-09   34.9   0.0    2.3e-09   34.5   0.0    1.1  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    6.8e-08   29.6   0.0      1e-07   29.0   0.0    1.3  1  TIGR01141 hisC: histidinol-phosphate transaminase
    1.9e-07   28.1   0.0    2.4e-07   27.8   0.0    1.1  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
      2e-07   28.1   0.0    3.2e-07   27.4   0.0    1.2  1  TIGR03947 viomycin_VioD: capreomycidine synthase
     0.0029   14.4   0.0     0.0037   14.1   0.0    1.2  1  TIGR03537 DapC: succinyldiaminopimelate transaminase


Domain annotation for each model (and alignments):
>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   8.3e-14   4.9e-11     109     268 ..     154     313 ..      62     362 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 8.3e-14
  TIGR03542 109 arllelfgsdktvavqdPvyPvyvdsavlaGragvldddgkykkivy.lpctkenefiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdps..lPksiyeiegakecaieirsfsktlGftGvrlg.ytvvPkelkved 268
                +++l  f ++k++ v dP++  +  +   +G    ++  ++y + ++ l      + + + pe + + ++  C   nPtG   t eq  +l+d  k+++ li+fd+ay+ f s ++    k++  + +a +  +  +sf+k+ G+ G r+g ++vv k+   +d
  MMETSP1061-20121228|453_1 154 GQFLADFYPNKNIYVPDPTWGNHHKIFAACGL--NVNTYRYYDRSTNrLNLEGMLKDFEDAPEGS-ILLLHACA-HNPTGCDPTDEQWSQLLDVIKAKGHLIFFDSAYQGFASGDAeaDAKALRRVVDAGFPVLLAQSFAKNFGLYGERCGtLSVVAKDAAQKD 313
                45566688899999999999999999888888..5666666665554144444455566677766.77777775.78***********************************97641157899***************************85689999987666 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.7e-12     1e-09      79     211 ..     155     308 ..     117     389 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.7e-12
  TIGR01140  79 qllprllapkrvlvlaptyseyaralraagaevvels.............dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpae.slaalaea.....lpglvVlrSltKffglaGlRlGf..vvAep 211
                q l+   ++k+  v+ pt++++ + ++a g++v+++               l++++++ e   ll+ +  +NPtG   + e+  +l++ +ka+g l+  D A+  f   + ++ a+a +        +++ +S+ K fgl G R+G   vvA++
  MMETSP1061-20121228|453_1 155 QFLADFYPNKNIYVPDPTWGNHHKIFAACGLNVNTYRyydrstnrlnlegMLKDFEDAPEGSILLLHACAHNPTGCDPTDEQWSQLLDVIKAKGHLIFFDSAYQGFASGDaEADAKALRrvvdaGFPVLLAQSFAKNFGLYGERCGTlsVVAKD 308
                568889999999*************************9*****999777745555544488888888889**********************************999887554444444565444457788***************72245544 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   3.9e-12   2.3e-09     115     349 ..     156     407 ..      88     414 .. 0.75

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 3.9e-12
  TIGR01265 115 ala..naganiLvPrPgfplYetlakalglevrkydllpekdweidldel.ealaDek..tvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgdatfvpla...klaskvPvlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlil.dp....atlvqgAlpdilektpkeffekkikv...lkenaelvyeelkeipglt...cvkPegamyllvklelelleeikd 349
                 la   +++ni vP P++ + + + +a+gl+v +y     +  +++l+++ +   D      +l+     nP+G   + +  +++++v + ++ li+ D  Y+ ++ gda+  + a    ++   Pvl  ++ +k++   G r G l vv +    +d +++ lk +++ +   p    +++v   l+d  ek  ++++++   +   +++  + + e+lke+   +    v  +  m+ +++++ e+ +e+ d
  MMETSP1061-20121228|453_1 156 FLAdfYPNKNIYVPDPTWGNHHKIFAACGLNVNTYRYYDRSTNRLNLEGMlKDFEDAPegSILLLHACAHNPTGCDPTDEQWSQLLDVIKAKGHLIFFDSAYQGFASGDAEADAKAlrrVVDAGFPVLLAQSFAKNFGLYGERCGTLSVVAKDAAQKDILMSQLKCIIRPMYsSPpkhgSSIVRTVLSD--EKLTEQYYQECAGMaerIQSMRSRLVETLKEVGSTHdwsHVSEQIGMFAYTGMNSEMCDELTD 407
                55544699****************************************8625677754114444555678***************************************6654433222467789*********************9999888777776666666555433212212226788888877..677788888776651115555555667777775543111444677788888888888888776 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.7e-10     1e-07      94     224 ..     161     304 ..     141     392 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.7e-10
  TIGR01141  94 epgdavlvleptysmYevsakiagaevkevplked..gqedleavle...aakekvklvflasPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee.....asvlellaeyp.nlvvlrTlSKafgLAglRvGyaia 224
                 p+++++v++pt+  ++ + +++g +v ++++ +   ++ +le +l+   +a e   l   a  +nPtG   + e+  ++l+   +   l+  D AY  F++      a++l  + +    ++  +++ K fgL g R+G + +
  MMETSP1061-20121228|453_1 161 YPNKNIYVPDPTWGNHHKIFAACGLNVNTYRYYDRstNRLNLEGMLKdfeDAPEGSILLLHACAHNPTGCDPTDEQWSQLLDVIkAkGHLIFFDSAYQGFASGdaeadAKALRRVVDAGfPVLLAQSFAKNFGLYGERCGTLSV 304
                5889************************9999888787777777777332222333344556679*****************99756899***********987765544444443333479999***************8533 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   4.1e-10   2.4e-07      65     275 ..     107     324 ..      57     410 .. 0.70

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 4.1e-10
  TIGR01264  65 kynGyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaiealad..aGenvlvPrPGfplyetlakaldievklynlladedweidlkel.esliddk..tkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkg..atflala.slssevPilslgGlakrllvPGWrlGWliihdrkgvlrdvk.dGlkklsq 275
                + + y+p  G ++  e+  ++     a ++le+   v +  ++ a ++  + lad  + +n+ vP P +  ++ +  a +++v+ y        +++l+ + + + d      +l+ +   nP+G   + +   +ll + + +   i+ d  y+++   +  a  +al   +++  P+l  +  ak++ + G r G l ++ +    +d++ + lk + +
  MMETSP1061-20121228|453_1 107 ENKEYLPIDGDQAYVEKALKFAY--GASAPLERIAGVQTLSGTGACRIGGQFLADfyPNKNIYVPDPTWGNHHKIFAACGLNVNTYRYYDRSTNRLNLEGMlKDFEDAPegSILLLHACAHNPTGCDPTDEQWSQLLDVIKAKGHLIFFDSAYQGFASGDaeADAKALRrVVDAGFPVLLAQSFAKNFGLYGERCGTLSVVAKDAAQKDILmSQLKCIIR 324
                45566666666666666555555..56666666665665555666666667777644679*****************************99999****97626666654113344456678************************************999333445554247899*************************99999999965144555444 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   5.4e-10   3.2e-07      91     230 ..     161     309 ..     147     327 .. 0.82

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 5.4e-10
  TIGR03947  91 rPGdevvvvdpayhslselavalgakvrrwplaaerdfrpdlddlralvtdrtr...lvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlv.....ydaeplpepsaaadrvisfgtlskafGlpGlrvGW.cvaPkdl 230
                 P  ++ v dp++ + +++ +a+g +v +++    +  r +l+ + +   d ++   l++    hnPtG   ++++ s+ll+++++ g  + +d+a++ ++      da++l  +  a   v+    ++k fGl G r G  +v+ kd 
  MMETSP1061-20121228|453_1 161 YPNKNIYVPDPTWGNHHKIFAACGLNVNTYRYYDRSTNRLNLEGMLKDFEDAPEgsiLLLHACAHNPTGCDPTDEQWSQLLDVIKAKGHLIFFDSAYQGFAsgdaeADAKALRRVVDAGFPVLLAQSFAKNFGLYGERCGTlSVVAKDA 309
                688899***************************9999999999876666655542215566789*******************************987555211116788899999999999*****************9525666665 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   6.2e-06    0.0037      89     219 ..     165     303 ..     152     422 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6.2e-06
  TIGR03537  89 kviygtpgypvyerGalfaggealkvklkkedgflleldaveeailr..etkivwi.nyphnptGaeapasylkevaelareygiilasdecyaeiysee..kpasvlevglen...vlafhslskrsGmtGyrsgfla 219
                ++ +++p++  + +     g++  + +   +++  l+l+ + ++     e  i+ + +  hnptG   + + + +  ++ +  g +++ d  y    s++  + a +l+  ++    vl  +s +k  G+ G r g l+
  MMETSP1061-20121228|453_1 165 NIYVPDPTWGNHHKIFAACGLNVNTYRYYDRSTNRLNLEGMLKDFEDapEGSILLLhACAHNPTGCDPTDEQWSQLLDVIKAKGHLIFFDSAYQGFASGDaeADAKALRRVVDAgfpVLLAQSFAKNFGLYGERCGTLS 303
                555555555555555444555555555555555556665555544321144455441578*************************************9994444556665566444488999************98653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1843.72
//
Query:       MMETSP1061-20121228|452_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-23   79.7   1.8    5.6e-23   79.7   1.2    1.6  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.7e-12   44.4   1.0    1.7e-12   44.4   0.7    1.5  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
      0.003   15.5   0.1      0.003   15.5   0.1    1.8  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.7   1.2   4.1e-26   5.6e-23       2     118 ..      14     130 ..      13     144 .. 0.74
   2 ?   -3.7   0.8      0.96   1.3e+03      77      77 ..     308     308 ..     275     348 .. 0.47

  Alignments for each domain:
  == domain 1    score: 79.7 bits;  conditional E-value: 4.1e-26
  TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgek.eaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrr.rskarrged 118
                +YeiL+v+ +A++++i+kAY +++ kyHPD+n++++ ea+++f ei  Aye Lsde kr+ YD+  +++  +g+++ g++ +g +  + ++ + ++e+  g +++++++ +++++ g++
  MMETSP1061-20121228|452_1  14 FYEILEVDPTADQATIRKAYLRKSLKYHPDKNPNNPeEAKARFVEIGMAYETLSDETKRRVYDRELRSRRGAGGFSFGGSGSG-S-GNGSGSSGTYESSSGFQQQQQQQqQQQQSGGSE 130
                9********************************9652799************************8888777766653332222.2.234445556666666544444442444444444 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.96
  TIGR02349  77 g 77 
                g
  MMETSP1061-20121228|452_1 308 G 308
                1 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.7   1.2e-15   1.7e-12       3      65 ..      13      77 ..      11      79 .. 0.92
   2 ?   -5.6   1.9       1.7   2.3e+03      96     128 ..     319     352 ..     313     358 .. 0.56

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 1.2e-15
  TIGR03835  3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka..adaakifaeineandvLsnPkkraryDk 65
                +ye+L++d+ ad+  i+ka+ + + kyhPD+n +   +a+  f ei  a++ Ls+  kr  yD+
  MMETSP1061-20121228|452_1 13 TFYEILEVDPTADQATIRKAYLRKSLKYHPDKNPNnpEEAKARFVEIGMAYETLSDETKRRVYDR 77
               59*******************999********97764578889********************96 PP

  == domain 2    score: -5.6 bits;  conditional E-value: 1.7
  TIGR03835  96 efddltdddkkskkkkkk.kkkgwfwakskeeek 128
                  +d  +d+ ++k   k   k   fw+ + e+ +
  MMETSP1061-20121228|452_1 319 SNNDSNNDNDNNKSSSKGsSKGSKFWKMAAEAVR 352
                3444445555555555540455578887777655 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.2e-06     0.003       3      55 ..      24      74 ..      23      81 .. 0.86
   2 ?   -3.3   0.5       1.3   1.8e+03      27      36 ..     116     125 ..     111     133 .. 0.57

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.2e-06
  TIGR00714  3 lDekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRae 55
                D+ ++rk y++   +yHPD  k+  +   a  +  e+  Ay+TL d  kR  
  MMETSP1061-20121228|452_1 24 ADQATIRKAYLRKSLKYHPD--KNPNNPEEAKARFVEIGMAYETLSDETKRRV 74
               59999***************..5555555789999************999965 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.3
  TIGR00714  27 aqeqaaalqq 36 
                +q+q++  qq
  MMETSP1061-20121228|452_1 116 QQQQQQQQQQ 125
                3333444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1368.92
//
Query:       MMETSP1061-20121228|461_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   16.0   2.1       0.42    8.7   1.4    2.3  1  TIGR01165 cbiN: cobalt transport protein


Domain annotation for each model (and alignments):
>> TIGR01165  cbiN: cobalt transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   1.4    0.0001      0.42      32      62 ..      36      67 ..      27      91 .] 0.78

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0001
  TIGR01165 32 eyaGad.deaeevieelepdykPWfsPlyePp 62
                y+G+d  e+++    ++p +kP f P + P+
  MMETSP1061-20121228|461_1 36 AYGGTDfTETKHEFCVTKPTFKPTFTPTFKPT 67
               57777744566677778888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 600.55
//
Query:       MMETSP1061-20121228|465_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 521.36
//
Query:       MMETSP1061-20121228|464_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.8   1.4          2    6.2   0.0    3.9  4  TIGR03351 PhnX-like: phosphonatase-like hydrolase
     0.0036   15.4   1.0        2.3    6.3   0.0    3.2  3  TIGR02464 ribofla_fusion: conserved hypothetical protein
  ------ inclusion threshold ------
       0.55    7.9   6.2        2.3    5.9   0.4    2.6  2  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ


Domain annotation for each model (and alignments):
>> TIGR03351  PhnX-like: phosphonatase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1     0.003       4.2      38      87 ..      15      62 ..       6      65 .. 0.64
   2 !    6.2   0.0    0.0014         2      42      83 ..      42      81 ..      34      86 .. 0.79
   3 !    6.2   0.0    0.0014         2      40      70 ..      86     114 ..      81     132 .. 0.69
   4 ?    2.8   0.0     0.016        22      40      57 ..     132     149 ..     105     157 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.003
  TIGR03351 38 evqeatmGkdKieairallaadgadeekvqaifaeFeerlaelyddaevv 87
                 + atmG++K+  +++ll+a  ++  +v+++  e  ++l++l  +a+ +
  MMETSP1061-20121228|464_1 15 SHEVATMGREKMGMLNQLLNA--SPSGEVATMGREKMAMLNQLLSAAPSQ 62
               445567888888888888875..566666666666666666666665555 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0014
  TIGR03351 42 atmGkdKieairallaadgadeekvqaifaeFeerlaelydd 83
               atmG++K++ +++ll+a  a+ ++++++  +  ++l++l ++
  MMETSP1061-20121228|464_1 42 ATMGREKMAMLNQLLSA--APSQEIATMGRDKMAMLSQLLNA 81
               58999999999999986..88888888888888888887766 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0014
  TIGR03351  40 qeatmGkdKieairallaadgadeekvqaif 70 
                ++atmG++K+e +++ll+a+    ++++++ 
  MMETSP1061-20121228|464_1  86 ESATMGREKMEMLNQLLSAKA--SQEIATMG 114
                5789*************8744..44444444 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.016
  TIGR03351  40 qeatmGkdKieairalla 57 
                ++atmG+dKi  +++ll+
  MMETSP1061-20121228|464_1 132 ESATMGRDKIGMLNDLLS 149
                455788888888888775 PP

>> TIGR02464  ribofla_fusion: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0     0.009        12      46      73 ..       3      30 ..       1      43 [. 0.83
   2 ?    2.1   0.0     0.033        45      44      70 ..      47      73 ..      40      84 .. 0.80
   3 !    6.3   0.0    0.0017       2.3      44      73 ..      93     122 ..      86     130 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.009
  TIGR02464 46 eeiaeeileaktpeeakklgrkvkkfke 73
               +++ +++l+ak+ +e++++gr+  ++ +
  MMETSP1061-20121228|464_1  3 MDMLNQLLSAKASHEVATMGREKMGMLN 30
               678999***************9766555 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.033
  TIGR02464 44 kdeeiaeeileaktpeeakklgrkvkk 70
               + +++ +++l+a   +e++++gr+   
  MMETSP1061-20121228|464_1 47 EKMAMLNQLLSAAPSQEIATMGRDKMA 73
               567889999999999********8654 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0017
  TIGR02464  44 kdeeiaeeileaktpeeakklgrkvkkfke 73 
                + +e+ +++l+ak+ +e++++gr++  + +
  MMETSP1061-20121228|464_1  93 EKMEMLNQLLSAKASQEIATMGRDRMDMLN 122
                678999*****************9766554 PP

>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.018        25      81     125 ..       2      46 ..       1      55 [. 0.77
   2 ?    5.9   0.4    0.0017       2.3      79     123 ..      92     136 ..      88     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.018
  TIGR03042  81 emtylnqsLlpkdkkeakklakelkedLeklDeAAklqdkseaqk 125
                +m +lnq L +k  +e+ ++ +e +  L +l +A+   +   + +
  MMETSP1061-20121228|464_1   2 KMDMLNQLLSAKASHEVATMGREKMGMLNQLLNASPSGEVATMGR 46 
                688999999999999999999999999998888877766666555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0017
  TIGR03042  79 rremtylnqsLlpkdkkeakklakelkedLeklDeAAklqdksea 123
                r++m++lnq L +k  +e+ ++ ++ ++ L +l +A+   ++  +
  MMETSP1061-20121228|464_1  92 REKMEMLNQLLSAKASQEIATMGRDRMDMLNQLLNASPSGESATM 136
                679999*******************99999999888877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 695.14
//
Query:       MMETSP1061-20121228|470_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.09s 00:00:00.18 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|473_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 413.97
//
Query:       MMETSP1061-20121228|474_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1061-20121228|471_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 407.97
//
Query:       MMETSP1061-20121228|475_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1061-20121228|477_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1074.12
//
Query:       MMETSP1061-20121228|469_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-21   73.4   0.0      5e-21   72.6   0.0    1.3  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    5.3e-16   56.3   0.0    1.4e-15   54.8   0.0    1.6  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    2.4e-09   33.3   0.0    8.7e-05   18.2   0.0    2.0  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    2.2e-08   30.7   0.0    2.3e-05   20.7   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    4.5e-07   26.8   0.0    0.00032   17.3   0.0    2.0  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    3.6e-05   20.0   0.0    0.00038   16.6   0.0    2.0  2  TIGR00631 uvrb: excinuclease ABC subunit B
    0.00052   16.9   0.0      0.034   11.0   0.0    2.1  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0081   12.3   0.0      0.018   11.2   0.0    1.5  2  TIGR00580 mfd: transcription-repair coupling factor
  ------ inclusion threshold ------
      0.039   10.0   0.0      0.051    9.7   0.0    1.1  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
      0.052   10.5   0.1       0.22    8.4   0.0    2.0  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   1.2e-23     5e-21     103     362 ..     254     513 ..     230     517 .. 0.81

  Alignments for each domain:
  == domain 1    score: 72.6 bits;  conditional E-value: 1.2e-23
  TIGR01389 103 elklLYvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaer..fpkapvialtatadaevredivekLe...lkdaaefvssfdRenlafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieeseasedrkqieskkLdella 362
                  +lL  +P rl+    + +l   +i++l +Dea  +   G  F p+ +r++e   +   +++  + + at  a++++   + L+   +    ++ s+ +      + v++++k + l++yl + ++   +i+++++++ ++l+ +L+++g++a   h+  s+++R++a+++F + ++ v+ at     G+d ++v  vi +dlP n++ y    GR GR G+  +a+ + +e++  + ++l +   + ++ +q   + L+++ +
  MMETSP1061-20121228|469_1 254 GCDLLVATPGRLVDLIERGRLGMENIKFLVLDEADRMLDMG--FEPQIRRIVEESGMpqGEDRQTMMFSATFPAQIQRLASDFLRdyiFLTVGRVGSASKDVTQKIEYVEEQDKLSALMKYLLTIEDGLILIFTETKRNCDDLEYRLCNNGFPACSIHGDKSQREREDALRSFKRGNTPVMAATDVASRGLDIPNVTQVINFDLPTNIDDYVHRIGRTGRAGNTGNALSFVNEKNSGIVRELRD---MLDENEQEVPQWLNQMAS 513
                3689999*****************************99998..89******987655104566689999999998887555544422133333333333333445566899999**********9999999*************************************************************************************************9999999888876533...334444444455666655 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.59   2.4e+02      18      48 ..     154     184 ..     141     187 .. 0.64
   2 !   54.8   0.0   3.5e-18   1.4e-15     211     351 ..     364     503 ..     321     523 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.59
  TIGR00614  18 evinavlegrdalvvmatGgGksLCyqlpav 48 
                       +grd +    tG Gk   + +p +
  MMETSP1061-20121228|469_1 154 YSCPIGSAGRDLMACAQTGSGKTAGFLFPII 184
                4444445677888888888888777777755 PP

  == domain 2    score: 54.8 bits;  conditional E-value: 3.5e-18
  TIGR00614 211 kiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdekkr 351
                + l+ l+k++ +  +g   +i+  ++++++++  +L ++g  a + h + ++++r++  + f r +  v+ at     G++ p+v +vi ++lp +i+ Y   +GR GR g + +++ f + ++  ++r+l  +  +++++
  MMETSP1061-20121228|469_1 364 DKLSALMKYLLTIEDGLI-LIFTETKRNCDDLEYRLCNNGFPACSIHGDKSQREREDALRSFKRGNTPVMAATDVASRGLDIPNVTQVINFDLPTNIDDYVHRIGRTGRAGNTGNALSFVNEKNSGIVRELRDMLDENEQE 503
                456778888886666666.99****************************************************999********************************************999988877776665555333 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.1e-07   8.7e-05      15     152 ..     149     290 ..     144     293 .. 0.77
   2 !   13.0   0.0   7.9e-06    0.0032     251     353 ..     381     479 ..     365     502 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.1e-07
  TIGR04121  15 rafQkevleaaeegesglliapTGaGKTlavflpsliela...akekpkkgl.....kvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeL 152
                ++ Qk      ++g++ +  a TG+GKT    +p++++++    +e+p++g      ++l ++P + La++i    ++     g+  +v +  G ++ +++ r  ++  d+L+ Tp  l  l+ +   +  +++++ +v+DE   +
  MMETSP1061-20121228|469_1 149 TPVQKYSCPIGSAGRDLMACAQTGSGKTAGFLFPIIMAMLrtgGSESPSNGRrqvypEALIMAPTRELAQQIYDEARRFTYCTGIA-TVCI-YGGAEVRDQLRNIERGCDLLVATPGRLVDLIERG--RLGMENIKFLVLDEADRM 290
                556666677778999999**********9999999999998884555555540001156779999999999999988877665554.4444.5779999999*****************9998765..456899999999997665 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 7.9e-06
  TIGR04121 251 tlvFtNtRsqaEllfqaLl.eaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepski 353
                 l+Ft t+  ++ l   L  +  +         Hg  ++ +Re   + +k+g+  ++ +T     G+D  +v +vi+   p ++   + RiGR++ + ++   +
  MMETSP1061-20121228|469_1 381 ILIFTETKRNCDDLEYRLCnNGFPA-----CSIHGDKSQREREDALRSFKRGNTPVMAATDVASRGLDIPNVTQVINFDLPTNIDDYVHRIGRTGRAGNTGNAL 479
                5778888777764433333033333.....445999999******************************************************99766555555 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   5.6e-08   2.3e-05      22     166 ..     133     287 ..     125     302 .. 0.80
   2 !    7.9   0.0   0.00041      0.17     317     377 ..     416     476 ..     387     486 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 5.6e-08
  TIGR03817  22 epdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.........p...ratalylaPtkalaadqlravkelee.rdv.raatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdec 166
                 +d+ + ++  G ++p   q     +  aG++ + ++ t sGk+ ++l+P++ a+ +          +      al +aPt+ la+      + ++  +++  +++y G   +++ + i   ++++++ P  l   i +        +++++++v+de+
  MMETSP1061-20121228|469_1 133 GEDLFRCTQLCGYTRPTPVQKYSCPIGSAGRDLMACAQTGSGKTAGFLFPIIMAMLRTggsespsngRrqvYPEALIMAPTRELAQQIYDEARRFTYcTGIaTVCIYGGAEVRDQLRNIERGCDLLVATPGRLVDLIERG----RLGMENIKFLVLDEA 287
                5778888888999999999999999***************************99999877777665514446689***********998888888875555156789998888888888888889999998776554333....334677777777777 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00041
  TIGR03817 317 drreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqda 377
                +r +  r++k+G+   +aat+    G+di  +  v+    P  +  +  ++Gr+Gr+g+  
  MMETSP1061-20121228|469_1 416 EREDALRSFKRGNTPVMAATDVASRGLDIPNVTQVINFDLPTNIDDYVHRIGRTGRAGNTG 476
                45555566778**********************************************9864 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00072      0.29     287     359 ..     207     275 ..     170     327 .. 0.69
   2 !   17.3   0.0   7.8e-07   0.00032     488     533 ..     408     453 ..     381     501 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00072
  TIGR00643 287 valmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekvefkeLa 359
                +++maPT  LA+Q y+++r++    gi    + g  +    +++l +i+ G  +l+v T   l + +e  +L+
  MMETSP1061-20121228|469_1 207 ALIMAPTRELAQQIYDEARRFTYCTGIATVCIYGGAEV---RDQLRNIERG-CDLLVATPGRLVDLIERGRLG 275
                689*****************988888877777776443...4445566666.577777776666666644444 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 7.8e-07
  TIGR00643 488 lhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvie 533
                +hg  ++ e+e++l++F+ +++ ++ aT v   G+d+Pn+t ++  
  MMETSP1061-20121228|469_1 408 IHGDKSQREREDALRSFKRGNTPVMAATDVASRGLDIPNVTQVINF 453
                79**************************************987754 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.048        20      47      77 ..     197     227 ..     156     231 .. 0.76
   2 !   16.6   0.0   9.3e-07   0.00038     443     520 ..     378     455 ..     352     502 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.048
  TIGR00631  47 anviakvqkPtlvlahnktLaaqLyeelkel 77 
                +n  ++v   +l++a+ + La q+y+e + +
  MMETSP1061-20121228|469_1 197 SNGRRQVYPEALIMAPTRELAQQIYDEARRF 227
                55556666779****************9987 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 9.3e-07
  TIGR00631 443 nervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDa 520
                +  +l+ t tk+ ++dl   l + g  +  +h +    er + +r++++g+  v+   ++   GlD+P+v+ v  +D 
  MMETSP1061-20121228|469_1 378 DGLILIFTETKRNCDDLEYRLCNNGFPACSIHGDKSQREREDALRSFKRGNTPVMAATDVASRGLDIPNVTQVINFDL 455
                55689*************99***************************************************9988773 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.012         5      25      78 ..     162     228 ..     156     250 .. 0.72
   2 !   11.0   0.0   8.3e-05     0.034     320     383 ..     409     472 ..     345     483 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.012
  TIGR04095  25 grGilkma.tGtGktltaLalvskl..........aekikslv...vvvvvPykhLveqWakeaekFg 78 
                gr +++ a tG+Gkt   L+ +             + + +++v    ++++P ++L++q + ea++F 
  MMETSP1061-20121228|469_1 162 GRDLMACAqTGSGKTAGFLFPIIMAmlrtggsespS-NGRRQVypeALIMAPTRELAQQIYDEARRFT 228
                5666665559*****999975443336788887642.233333233699*****************96 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 8.3e-05
  TIGR04095 320 taeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRk 383
                   +s++eRe+ l++f++g+  +++a      G+D+P++ + +     +n  +++ R GR  R 
  MMETSP1061-20121228|469_1 409 HGDKSQREREDALRSFKRGNTPVMAATDVASRGLDIPNVTQVINFDLPTNIDDYVHRIGRTGRA 472
                5567899*****************************************************8775 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.59   2.4e+02     502     582 ..     208     289 ..     199     290 .. 0.68
   2 !   11.2   0.0   4.4e-05     0.018     689     733 ..     407     451 ..     403     487 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.59
  TIGR00580 502 avlvPTTlLaeQHfetlkeRfknfpvkiellsrfrkakekkeilkelaeGkidiliGTh.kll...q.kdvkfkdlgLliiDEEqr 582
                 +++PT  La+Q +++   Rf  +   i+++  +   +e ++ l+++++G  d+l+ T  +l+   +   + +++++ l++DE  r
  MMETSP1061-20121228|469_1 208 LIMAPTRELAQQIYDEA-RRF-TYCTGIATVCIYGG-AEVRDQLRNIERG-CDLLVATPgRLVdliErGRLGMENIKFLVLDEADR 289
                68999999****99974.456.58888888877665.7788888888888.58888885233211121356677777777777665 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 4.4e-05
  TIGR00580 689 iaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTii 733
                 +Hg  +++e e+ + +F+++++ v+ +T +   G+dipn+  +i
  MMETSP1061-20121228|469_1 407 SIHGDKSQREREDALRSFKRGNTPVMAATDVASRGLDIPNVTQVI 451
                57**************************************97666 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00012     0.051     195     288 ..     363     452 ..     249     459 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00012
  TIGR01970 195 edrvaraveealaeesgsvLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviD 288
                +d+++  ++ +l  e g +L+f     e +r  + L+ rl +     c ++G+ +  +++ a+++  +G   v+ at++a   l i+ v  vi+
  MMETSP1061-20121228|469_1 363 QDKLSALMKYLLTIEDGLILIFT----ETKRNCDDLEYRLCNNGFPACSIHGDKSQREREDALRSFKRGNTPVMAATDVASRGLDIPNVTQVIN 452
                56677777888888899999995....6666667777788888999*******************************************99986 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.6   1.1e+03       4      14 ..     167     177 ..     165     181 .. 0.77
   2 ?    8.4   0.0   0.00054      0.22     155     320 ..     313     473 ..     279     483 .. 0.60

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.6
  TIGR01587   4 ieAPtGyGKte 14 
                  A tG+GKt 
  MMETSP1061-20121228|469_1 167 ACAQTGSGKTA 177
                5688*****96 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00054
  TIGR01587 155 dvkillmsAtlpkllkeylekielv.eenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqel.yqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.v.dvlitel.apidsLiQRlGRlaRyg 320
                d + ++ sAt+p  +++++ +   + ++        +++   q+i  +  + + ++s l + l  +++ + +li+  t ++   l y   ++  p+     +H+  ++ +re      l+++k+ +  v+ aT v+  +lDi  v  v+  +l   id  + R+GR  R g
  MMETSP1061-20121228|469_1 313 DRQTMMFSATFPAQIQRLASDFLRDyIFLTVGRVGSASKDVTQKIEYV--EEQDKLSALMKYLLTIED-GLILIFTETKRNCDDLeYRLCNNGFPA---CSIHGDKSQRERE----DALRSFKRGNTPVMAATDVASRGLDIPnVtQVINFDLpTNIDDYVHRIGRTGRAG 473
                556677777777777776666543303333333333333334443333..333344444444544444.446677777666666524444444443...6677755555554....45******999***************52314444555255999999999999955 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.19s 00:00:00.63 Elapsed: 00:00:00.60
# Mc/sec: 1297.89
//
Query:       MMETSP1061-20121228|479_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 477.67
//
Query:       MMETSP1061-20121228|481_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 259.98
//
Query:       MMETSP1061-20121228|486_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-76  254.3   0.6      2e-76  253.9   0.4    1.1  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
     0.0004   17.9   0.1    0.00087   16.8   0.1    1.5  1  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type
  ------ inclusion threshold ------
      0.015   11.5   0.0      0.023   10.9   0.0    1.2  1  TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.9   0.4   1.5e-79     2e-76      17     191 ..     102     276 ..      87     277 .. 0.97

  Alignments for each domain:
  == domain 1    score: 253.9 bits;  conditional E-value: 1.5e-79
  TIGR00493  17 afdiysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaGlaiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqplGGaqGqasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvlt 191
                  diy rl +erii+l++e++de an+++  +l+l++ed++k i+lyinspGGs+ +Glai d mq+i+ +v ti +Glaasm +f+laaG+kGkrlalp+srimihqp+GGaqGqa di+++a +ilk++++l ++ +  tGq+ e+i+kd +rd+flsa ea +yGlid+vl+
  MMETSP1061-20121228|486_1 102 WVDIYNRLYRERIIFLGAEIDDELANQVIGVMLYLDSEDSSKPIYLYINSPGGSVISGLAIIDCMQHIQSEVITINLGLAASMASFILAAGSKGKRLALPSSRIMIHQPMGGAQGQAEDIKVEAAQILKIRDNLVKMYSMMTGQTTERITKDLDRDNFLSAYEAADYGLIDRVLE 276
                46***************************************************************************************************************************************************************************95 PP

>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   6.4e-07   0.00087      19      85 ..     129     193 ..     114     203 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.4e-07
  TIGR00706  19 vlkklekikddksvkalvlkidSPGGtvvaseeiyeklkklkakkpvvasvgnvaaSGgyyialaad 85 
                v+  +  + +++s k + l i+SPGG+v     i + +++++    v+++  ++aaS + +i +a++
  MMETSP1061-20121228|486_1 129 VIGVMLYLDSEDSSKPIYLYINSPGGSVISGLAIIDCMQHIQ--SEVITINLGLAASMASFILAAGS 193
                55555667788999***************************9..78888888899998888877665 PP

>> TIGR00705  SppA_67K: signal peptide peptidase SppA, 67K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.7e-05     0.023     344     403 ..     136     192 ..     110     201 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.7e-05
  TIGR00705 344 arsDddvkAvvLRvnspGGsvfAseiirrelealkaaGkPvivsmGavAAsGgYWiasaa 403
                  s+d+ k + L +nspGGsv     i   +++++ +   vi    ++AAs + +i +a+
  MMETSP1061-20121228|486_1 136 LDSEDSSKPIYLYINSPGGSVISGLAIIDCMQHIQSE---VITINLGLAASMASFILAAG 192
                3467889********************9999999998...66555568999888887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1297.13
//
Query:       MMETSP1061-20121228|482_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2414.30
//
Query:       MMETSP1061-20121228|489_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 339.40
//
Query:       MMETSP1061-20121228|491_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 470.57
//
Query:       MMETSP1061-20121228|492_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 425.96
//
Query:       MMETSP1061-20121228|488_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 1338.31
//
Query:       MMETSP1061-20121228|493_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       295  (0.0719161); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 779.56
//
Query:       MMETSP1061-20121228|496_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1687.57
//
Query:       MMETSP1061-20121228|498_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   12.7   0.6      0.047   12.2   0.4    1.3  1  TIGR02118 TIGR02118: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02118  TIGR02118: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.4   1.1e-05     0.047      35     100 ..      40     107 ..       5     111 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.1e-05
  TIGR02118  35 lrryevdkavss.aepGespeylgvaelyfdsledfkaaldspegkaaaaDvanfadkavt.llisev 100
                + ++ vd +      + ++++y ++a+ + d  +++k a   +++ka+a  + nf d +vt ++++++
  MMETSP1061-20121228|498_1  40 CSSWIVDYCGMCtEYMDKQVQYEMMAQRFQDTANSLKPAETFDIQKAVASCRTNFEDIKVTaAMMFDE 107
                667777776655234566789*******************99****************9541344444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 699.05
//
Query:       MMETSP1061-20121228|500_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-05   21.9  45.3    2.1e-05   21.8  31.4    1.0  1  TIGR02794 tolA_full: protein TolA
  ------ inclusion threshold ------
       0.73    5.2  18.5       0.76    5.1  12.9    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
       0.79    6.5   5.1       0.85    6.5   3.5    1.1  1  TIGR02992 ectoine_eutC: ectoine utilization protein EutC


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8  31.4   1.5e-08   2.1e-05     137     212 ..       3      75 ..       1      76 [] 0.41

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.5e-08
  TIGR02794 137 aEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeak.KakaeaeaKakaeeakaKaea 212
                +Ea  kae+ea+   +a+eeA+ kaEeeak +a+++a+ +aE eea+ +ae+ea+ Ka++ea+ +a++e a+ Kae+
  MMETSP1061-20121228|500_1   3 EEAITKAEEEARL--QAEEEARLKAEEEAKLQAEEQARLRAE-EEARLRAEEEARlKAEEEARIQAQEE-ARLKAEE 75 
                3443333333322..344444444444444444444444444.44555555555555555555555333.4444443 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1  12.9   0.00055      0.76     838     909 ..       8      76 .]       1      76 [] 0.62

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00055
  TIGR00927 838 GdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdeg 909
                 +e+e   +aeee + k +e e++++a+e++  +++e e+  +aeeea  k +e+e  i+a+e++ +k +e+
  MMETSP1061-20121228|500_1   8 KAEEEARLQAEEEARLKAEE-EAKLQAEEQARLRAEE-EARLRAEEEARLK-AEEEARIQAQEEARLKAEEE 76 
                23556677777777776666.7777777777777774.7777777777665.46677777777777777664 PP

>> TIGR02992  ectoine_eutC: ectoine utilization protein EutC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.5   0.00062      0.85     121     169 ..      17      65 ..       4      75 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00062
  TIGR02992 121 arrlaredasevailGaGvqarlqlealtlvrdiksariwardaakaea 169
                a   ar +a+e a l a +qarl+ e  +  r  ++ar+ a ++a+ +a
  MMETSP1061-20121228|500_1  17 AEEEARLKAEEEAKLQAEEQARLRAEEEARLRAEEEARLKAEEEARIQA 65 
                4444566666666666666666666666666666666666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|508_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|507_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1111.49
//
Query:       MMETSP1061-20121228|511_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.22
# Mc/sec: 3041.75
//
Query:       MMETSP1061-20121228|513_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.19
# Mc/sec: 2250.76
//
Query:       MMETSP1061-20121228|517_1  [L=980]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (980 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.51
# Mc/sec: 2536.26
//
Query:       MMETSP1061-20121228|518_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.36
# Mc/sec: 1114.57
//
Query:       MMETSP1061-20121228|519_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 533.96
//
Query:       MMETSP1061-20121228|522_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 491.96
//
Query:       MMETSP1061-20121228|526_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 321.36
//
Query:       MMETSP1061-20121228|521_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 1300.34
//
Query:       MMETSP1061-20121228|530_1  [L=832]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.2   0.3      0.028   11.9   0.2    1.7  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family


Domain annotation for each model (and alignments):
>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   6.9e-06     0.028       1      34 [.      63      96 ..      63     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.9e-06
  TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkel 34
               yDvvv G G   s++A  la++G +Vl  + ++ 
  MMETSP1061-20121228|530_1 63 YDVVVCGTGLVQSILASALARAGKSVLHCDGADY 96
               9**************************9887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 3327.73
//
Query:       MMETSP1061-20121228|525_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-14   50.7   0.2    5.8e-14   49.9   0.1    1.4  1  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.1   1.4e-17   5.8e-14      26     104 ..     126     203 ..     104     216 .. 0.86

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 1.4e-17
  TIGR03677  26 kikkGtnevtkaverGiaklvviaedvePeeivahlpalceekkipyvyvkkkedlGkaaGlevsaaavaivdeGkaee 104
                 ik G   vt  +e  +a+lv+ia dv+P e+v+++palc + ++p++ vk k+ lG+ +    +aa+va++  Gk + 
  MMETSP1061-20121228|525_1 126 CIKFGLKHVTTLIEEKKAELVLIACDVDPIELVMWMPALCRKMDVPFMIVKDKARLGALVHQ-KTAACVALTGVGKEDA 203
                589999***************************************************99876.5677888888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1435.38
//
Query:       MMETSP1061-20121228|527_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-14   49.3   0.0    1.4e-13   48.4   0.0    1.5  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    3.4e-05   20.6   0.0     0.0019   14.9   0.0    2.1  2  TIGR01179 galE: UDP-glucose 4-epimerase
    0.00017   18.5   0.0    0.00026   17.9   0.0    1.2  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
     0.0007   17.1   0.0      0.038   11.4   0.0    2.1  2  TIGR01777 yfcH: TIGR01777 family protein
     0.0011   16.0   0.0     0.0041   14.1   0.0    1.8  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
     0.0069   13.1   0.0      0.012   12.3   0.0    1.3  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
  ------ inclusion threshold ------
      0.016   12.1   0.0      0.034   11.0   0.0    1.5  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
      0.034   10.9   0.0        0.4    7.3   0.0    2.0  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase


Domain annotation for each model (and alignments):
>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   2.8e-16   1.4e-13       1     218 [.      12     230 ..      12     293 .. 0.74

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 2.8e-16
  TIGR01214   1 rilitGa.kgqlgreLveqlskegsevvaltrsqldledpealeellreikPdvvvntaAyt...dVDkaEseaekayavNalatenlAraaarvgallvhiSTD..YvFDGekkr....pYreedetnPl.nvYgqsKlaGEvavraasekalivRtswlygasgg.rnFvktmlrlakereelkvvadQigsPTyakdlaevlaallereargvyHlanegqvSwyef 218
                r+l++G+ +g +g  +v+ ++keg ev a +++   +++ e++++ l+eikP  v+n+a  t   ++D +E+++ +  + N+++t nlA ++ + g+    + T   +v+D ++ +     ++eede+n   ++Y+++K   E + +  +++ li+R+    +     r Fv+ +++     e++    +   s T  + +  + +a++++  +gvy ++n g++S  e 
  MMETSP1061-20121228|527_1  12 RVLVFGGkTGWIGGLMVDMMKKEGIEVYAAESR---MQNRESVAKELDEIKPTHVLNAAGITgrpNIDWCETNKPETIRTNVIGTLNLADLCLERGIHCTVYATGciFVYDEKHPEgsgiGFTEEDEPNFYgSFYSETKGYMEPMLK-NFPNCLILRVRMPISDDLIhRSFVTKIVKY----ERVV---NIPNSMTILSEMLPASLAMAKKGLTGVYNFTNPGVISHNEV 230
                68888772699***************9999996...999**********************97667*********************************9999983356676443322226********87369*****99998765.57999****987655544336777766654....3322...22233444444444455556667777787777777777665 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0034       1.8       2      55 ..      13      68 ..      12      86 .. 0.79
   2 !   14.9   0.0   3.7e-06    0.0019      57     159 ..      46     157 ..      41     165 .. 0.69

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0034
  TIGR01179  2 iLvtGg.aGyiGshvvrqllekgkevvvlDnlskgskealkalekit.evklvegd 55
               +Lv Gg +G+iG  +v  ++++g ev   +   +  +++ k+l++i+ + +l  + 
  MMETSP1061-20121228|527_1 13 VLVFGGkTGWIGGLMVDMMKKEGIEVYAAESRMQNRESVAKELDEIKpTHVLNAAG 68
               77776658*******************99999999999999999888544555555 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 3.7e-06
  TIGR01179  57 adkekleavleeekidaviHfaali...avgEsvkePlkYYennvvntleLleamqkagvkkliFsssaa.vYgesek....vpisEespln.pinpYGrsklmvErilkdl 159
                +++e++++ l+e k+  v+  a+ +   ++    ++  +  + nv +tl+L +++ + g++  +++  +  vY e++     + ++Ee + n   + Y ++k  +E +lk++
  MMETSP1061-20121228|527_1  46 QNRESVAKELDEIKPTHVLNAAGITgrpNIDWCETNKPETIRTNVIGTLNLADLCLERGIHCTVYATGCIfVYDEKHPegsgIGFTEEDEPNfYGSFYSETKGYMEPMLKNF 157
                5566666666666666666655544111333333333455789***********************998659998653121255666555554999*************987 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     5e-07   0.00026      68     120 ..      51     108 ..      26     113 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5e-07
  TIGR03589  68 leraledvd..lvvhaaalk...qvpaaeynPleciktnieGaenvidaaldkgvkkv 120
                + + l+++    v+ aa +    +++ +e n  e+i+tn+ G+ n+ d +l++g++  
  MMETSP1061-20121228|527_1  51 VAKELDEIKptHVLNAAGITgrpNIDWCETNKPETIRTNVIGTLNLADLCLERGIHCT 108
                555555654325777777753336788***************************9865 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   7.4e-05     0.038       2     116 ..      15     118 ..      13     153 .. 0.68
   2 ?    3.6   0.0     0.017       8.7     210     236 ..     207     233 ..     200     244 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.4e-05
  TIGR01777   2 litGgtGliGralveelekkghevviltrskekekeekkesakevaeeaeeealegvdavinLaGepiadkrwteerkkeileSRikttealvelikkakqkpkvlisasavgyY 116
                +  G tG iG  +v  ++k+g ev++   + ++ +e++ ++ +e+       + ++v     ++G+p +   w e++k e ++  +  t  l++l  ++  +++v+  ++   +Y
  MMETSP1061-20121228|527_1  15 VFGGKTGWIGGLMVDMMKKEGIEVYAAESRMQN-RESVAKELDEI-------KPTHVLNAAGITGRPNI--DWCETNKPETIRTNVIGTLNLADLCLERGIHCTVYATGCIF-VY 118
                445779******************998666552.22221222122.......22333333344555555..6*********************9999999888887766544.33 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.017
  TIGR01777 210 aleneevsGvvNataPepvrnkefaka 236
                a+ ++ ++Gv+N+t P  ++++e+ + 
  MMETSP1061-20121228|527_1 207 AMAKKGLTGVYNFTNPGVISHNEVLDL 233
                788999************999998765 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.019       9.5       6      50 ..      12      57 ..      10      72 .. 0.79
   2 !   14.1   0.0     8e-06    0.0041      58     168 ..      40     157 ..      26     167 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.019
  TIGR02622  6 kvlv.tGhtGfkGsWlslwLkelGaevaGysldpetkpnlfellkl 50
               +vlv  G+tG+ G+ ++  +k+ G ev+   + +++++++ ++l+ 
  MMETSP1061-20121228|527_1 12 RVLVfGGKTGWIGGLMVDMMKKEGIEVYAAESRMQNRESVAKELDE 57
               45552689*******************9999999888887776654 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 8e-06
  TIGR02622  58 svlgdirdaeklekaieevkPeivfhla...aqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenk...ewvwgyretdalGGh.DpYsaskaaaelvvasy 168
                +  + ++++e+++k ++e+kP  v+  a     p +    ++  et++tnv+Gt+nl +   +   +++v +     vY+ k    +  g+ e+d+   +   Ys  k+ +e +++ +
  MMETSP1061-20121228|527_1  40 AAESRMQNRESVAKELDEIKPTHVLNAAgitGRPNIDWCETNKPETIRTNVIGTLNLADLCLERGIHCTVYATGCIFVYDEKhpeGSGIGFTEEDEPNFYgSFYSETKGYMEPMLKNF 157
                4567799999*************998662225899999999999***************99999999998888889999988442356899999976555246899999888777666 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.3e-05     0.012     148     186 ..      12      51 ..       2      74 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.3e-05
  TIGR02823 148 evlV.tGAtGgVgslavalLsklGyevvavtgkkeeeeyl 186
                 vlV  G tG +g l v++++k G ev+a+ ++ +++e +
  MMETSP1061-20121228|527_1  12 RVLVfGGKTGWIGGLMVDMMKKEGIEVYAAESRMQNRESV 51 
                455515789***********************99987543 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.6e-05     0.034      36     128 ..      19     113 ..      14     161 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.6e-05
  TIGR04180  36 swGwldevekev..kkeievvlGd..irdaesvkkavkgvd..vvfhlaalia...iPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGta 128
                + Gw+  +  ++  k+ iev++ +  +++ esv k + +++  +v+  a + +   i +  +     + tnv Gtln+ + + + +++  v       y t 
  MMETSP1061-20121228|527_1  19 KTGWIGGLMVDMmkKEGIEVYAAEsrMQNRESVAKELDEIKptHVLNAAGITGrpnIDWCETNKPETIRTNVIGTLNLADLCLERGIHCTV-------YATG 113
                6788887666551145699998772255778898888887622566666676633355777777889***************999997544.......3333 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0   0.00078       0.4       3     112 ..      13     112 ..      11     134 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00078
  TIGR03466   3 vlvt.GatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeaslkka.lkGcealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvyts 112
                vlv  G tG++G  +v ++++eG ev +    +s+ +n e++  E+   ++k +++l++a ++G         + +   +++ e +++nv gt ++    le+g++ +vy+ 
  MMETSP1061-20121228|527_1  13 VLVFgGKTGWIGGLMVDMMKKEGIEVYAA---ESRMQNRESVAKELD--EIKPTHVLNAAgITGR-------PNIDWCETNKPETIRTNVIGTLNLADLCLERGIHCTVYAT 112
                55541568999999999999999988764...444455444444432..3444444433212222.......2334445566677777777777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1158.57
//
Query:       MMETSP1061-20121228|529_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.9   0.0      0.054   11.1   0.0    1.3  1  TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication


Domain annotation for each model (and alignments):
>> TIGR03082  Gneg_AbrB_dup: membrane protein AbrB duplication
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.3e-05     0.054      58     101 ..      23      66 ..      20      74 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.3e-05
  TIGR03082  58 GiliGlrftrevlkelkrllpaallitvlllllalllalllarl 101
                G++ G  f++e+l+e+++ + +a+ ++v++++ a+l  l+l++ 
  MMETSP1061-20121228|529_1  23 GASAGEGFDEEILEEVASGVDPAIYLLVAFIVGAFLYFLYLKKN 66 
                8999********************************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       446  (0.108727); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1245.10
//
Query:       MMETSP1061-20121228|532_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1821.45
//
Query:       MMETSP1061-20121228|534_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   11.9   0.5       0.15   10.2   0.2    1.7  2  TIGR03836 termin_org_HMW1: cytadherence high molecular weight protein 1 N-terminal region


Domain annotation for each model (and alignments):
>> TIGR03836  termin_org_HMW1: cytadherence high molecular weight protein 1 N-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   3.6e-05      0.15      27      73 ..      10      59 ..       7      62 .. 0.77
   2 ?    2.2   0.0     0.012        48      27      39 ..      54      66 ..      49      67 .] 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.6e-05
  TIGR03836 27 tveedgsikvaydaddnayyiafdketevyy.....dPyedteldisalfda 73
                ++ d+ +++ayd  d +  ++fd+ + vy+     +   +  +d+s  +da
  MMETSP1061-20121228|534_1 10 SIPYDATVQLAYDKSDKS--MSFDEFKPVYLaqavaEVIAKQPIDVSIPYDA 59
               5788*********99987..79999999997333335567888888888887 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.012
  TIGR03836 27 tveedgsikvayd 39
                ++ d+ +++ayd
  MMETSP1061-20121228|534_1 54 SIPYDATVQLAYD 66
               5678999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 401.97
//
Query:       MMETSP1061-20121228|535_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 353.97
//
Query:       MMETSP1061-20121228|536_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-73  245.3   0.0    5.1e-47  158.0   0.0    2.0  2  TIGR02082 metH: methionine synthase


Domain annotation for each model (and alignments):
>> TIGR02082  metH: methionine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.6   0.0   8.8e-29   3.6e-25     548     631 ..       2      86 ..       1     126 [. 0.86
   2 !  158.0   0.0   1.2e-50   5.1e-47       3     131 ..     195     330 ..     193     331 .] 0.94

  Alignments for each domain:
  == domain 1    score: 85.6 bits;  conditional E-value: 8.8e-29
  TIGR02082 548 GvsnvsFslrgndavRealhsvFLyeai.kaGlDmgivnagklavyddidkelrevvedlildrrreatekLlelaelykgtkek 631
                G+sn+sF++rg  ++Re +hsvFLy+ai ++G+D+givna +l+ y+++++++re++e+l+++++++ate +le +   + ++e+
  MMETSP1061-20121228|536_1   2 GISNLSFGFRGVTKIRESIHSVFLYHAIlESGMDVGIVNAHELLDYHKLEDDMRELCENLVFNKNPDATEDMLERTAYERSVNEA 86 
                9*************************97689****************************************99977654444443 PP

  == domain 2    score: 158.0 bits;  conditional E-value: 1.2e-50
  TIGR02082   3 krilvlDGamGtqlqsa....nLteadFrge.eadlarelkGnndlLnltkPeviaaihrayfe.aGaDivetntFnsteialadYdledkayelnkkaaklarevadeft.ltpekkRfvaGslGPtnklatlsp 131
                 ri ++DGamGt++q++    +L+ea+Frge ++d+  ++kGnnd+L++t+P +i++i+ ay+e  G+D++ tntF++t+ia+adY++e+ +yeln ++a+lare++de+t ++p k+Rfv+G++GPtn++ ++sp
  MMETSP1061-20121228|536_1 195 SRIAMYDGAMGTMIQNYakknKLDEAEFRGEkFKDWGVNVKGNNDMLSITQPKIIKDIYMAYLEeGGSDLIGTNTFSGTSIAMADYEMESYIYELNYESARLAREACDEVTaKDPTKPRFVVGAIGPTNRTGSISP 330
                6999***********7433338*****************************************72579*******************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 1747.54
//
Query:       MMETSP1061-20121228|542_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 509.96
//
Query:       MMETSP1061-20121228|539_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 1362.59
//
Query:       MMETSP1061-20121228|545_1  [L=1245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-65  210.5  37.7    6.4e-07   27.0   0.0   25.2 24  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.53   2.2e+03      17      26 ..     194     203 ..     193     203 .. 0.91
   2 !   14.5   0.0   1.5e-06    0.0061       1      24 [.     220     243 ..     220     249 .. 0.93
   3 ?    2.2   0.0     0.013        52       2      14 ..     263     275 ..     262     276 .. 0.88
   4 ?    1.6   0.1     0.019        79       1      14 [.     306     319 ..     306     320 .. 0.87
   5 !   24.1   0.1   1.4e-09   5.6e-06       1      28 [.     350     377 ..     350     379 .. 0.95
   6 ?    0.2   0.0     0.053   2.2e+02       1      13 [.     391     403 ..     391     407 .. 0.86
   7 !    3.9   0.0    0.0036        15       1      17 [.     435     451 ..     435     452 .. 0.87
   8 !   17.2   0.0   2.1e-07   0.00087       1      28 [.     479     506 ..     479     507 .. 0.94
   9 !    4.9   0.0    0.0017       6.8       2      15 ..     521     534 ..     520     537 .. 0.91
  10 ?    0.2   0.0     0.052   2.1e+02       2      15 ..     565     578 ..     564     581 .. 0.81
  11 !   19.4   0.0   4.3e-08   0.00018       2      28 ..     609     635 ..     608     637 .. 0.94
  12 !    4.5   0.0    0.0023       9.4       2      17 ..     650     665 ..     649     679 .. 0.89
  13 ?   -0.8   0.0      0.11   4.5e+02       2      16 ..     694     708 ..     693     724 .. 0.72
  14 !   19.5   0.0   3.8e-08   0.00015       1      31 [.     737     767 ..     737     771 .. 0.91
  15 ?   -1.2   0.0      0.14   5.9e+02      18      28 ..     799     809 ..     797     810 .. 0.88
  16 !    4.0   0.0    0.0034        14       1      17 [.     823     839 ..     823     853 .. 0.86
  17 !   27.0   0.0   1.6e-10   6.4e-07       1      28 [.     867     894 ..     867     895 .. 0.95
  18 !    4.1   0.2    0.0031        13       2      27 ..     909     938 ..     908     940 .. 0.70
  19 ?    2.3   0.0     0.011        47       1      16 [.     953     968 ..     953     983 .. 0.84
  20 !   23.1   0.0   2.8e-09   1.1e-05       1      28 [.     997    1024 ..     997    1026 .. 0.95
  21 !    5.2   0.0    0.0013       5.5      16      34 ..    1056    1074 ..    1038    1075 .. 0.71
  22 ?    1.4   0.0     0.023        92       2      17 ..    1077    1092 ..    1076    1107 .. 0.82
  23 !   22.7   0.0   3.7e-09   1.5e-05       1      28 [.    1120    1147 ..    1120    1148 .. 0.96
  24 !    2.6   0.1    0.0093        38       2      14 ..    1162    1174 ..    1161    1192 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.53
  TIGR00756  17 eeAlelfdeM 26 
                +eAl+++++M
  MMETSP1061-20121228|545_1 194 REALKILNKM 203
                79*******9 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.5e-06
  TIGR00756   1 vtyntlisglckagrveeAlelfd 24 
                vty+++i +++++g+++ A  +f+
  MMETSP1061-20121228|545_1 220 VTYTSVIAAYAQRGDIDGASVVFE 243
                7******************99997 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.013
  TIGR00756   2 tyntlisglckag 14 
                t+ t+i+++ k++
  MMETSP1061-20121228|545_1 263 TFKTMINACTKSR 275
                999*******987 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.019
  TIGR00756   1 vtyntlisglckag 14 
                +ty+++i++  k++
  MMETSP1061-20121228|545_1 306 ITYSSVINCWTKSN 319
                69*******99986 PP

  == domain 5    score: 24.1 bits;  conditional E-value: 1.4e-09
  TIGR00756   1 vtyntlisglckagrveeAlelfdeMke 28 
                +ty +++++++++g+ve A+e+++ Mk 
  MMETSP1061-20121228|545_1 350 ITYASVLDAYARRGDVEGAMEVWEMMKQ 377
                69************************85 PP

  == domain 6    score: 0.2 bits;  conditional E-value: 0.053
  TIGR00756   1 vtyntlisglcka 13 
                ++y++li++ +k+
  MMETSP1061-20121228|545_1 391 YMYTILIKAWAKS 403
                68*******9986 PP

  == domain 7    score: 3.9 bits;  conditional E-value: 0.0036
  TIGR00756   1 vtyntlisglckagrve 17 
                +ty tli++ +k++ ++
  MMETSP1061-20121228|545_1 435 FTYGTLINCWAKSRYTD 451
                69**********98765 PP

  == domain 8    score: 17.2 bits;  conditional E-value: 2.1e-07
  TIGR00756   1 vtyntlisglckagrveeAlelfdeMke 28 
                vty + ++++++ g+++ Ale+f+ Mke
  MMETSP1061-20121228|545_1 479 VTYGATMDAYARKGDTKGALEIFQMMKE 506
                699999********************98 PP

  == domain 9    score: 4.9 bits;  conditional E-value: 0.0017
  TIGR00756   2 tyntlisglckagr 15 
                +y tl+s+++++g+
  MMETSP1061-20121228|545_1 521 IYGTLMSAYVRSGD 534
                79**********98 PP

  == domain 10    score: 0.2 bits;  conditional E-value: 0.052
  TIGR00756   2 tyntlisglckagr 15 
                +y tli++ +k+  
  MMETSP1061-20121228|545_1 565 IYGTLINCWSKSEL 578
                7*******999765 PP

  == domain 11    score: 19.4 bits;  conditional E-value: 4.3e-08
  TIGR00756   2 tyntlisglckagrveeAlelfdeMke 28 
                +yn+++++++++g++e A  + ++M+e
  MMETSP1061-20121228|545_1 609 IYNSVLDACARQGDIEGANAVRKLMQE 635
                8************************98 PP

  == domain 12    score: 4.5 bits;  conditional E-value: 0.0023
  TIGR00756   2 tyntlisglckagrve 17 
                ty++li ++++ g+++
  MMETSP1061-20121228|545_1 650 TYSMLIYAHSRGGKPN 665
                9************975 PP

  == domain 13    score: -0.8 bits;  conditional E-value: 0.11
  TIGR00756   2 tyntlisglckagrv 16 
                +++++i++ +k+  +
  MMETSP1061-20121228|545_1 694 SHSIVINCWAKSDFP 708
                678888888887554 PP

  == domain 14    score: 19.5 bits;  conditional E-value: 3.8e-08
  TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergi 31 
                +ty +++++++++g++  A++++d M+++ +
  MMETSP1061-20121228|545_1 737 ITYHSVLDAYSRRGDIQGAIQIWDIMMDDFH 767
                69************************99765 PP

  == domain 15    score: -1.2 bits;  conditional E-value: 0.14
  TIGR00756  18 eAlelfdeMke 28 
                eA++l+++M++
  MMETSP1061-20121228|545_1 799 EAERLLNDMID 809
                89*******87 PP

  == domain 16    score: 4.0 bits;  conditional E-value: 0.0034
  TIGR00756   1 vtyntlisglckagrve 17 
                ++y+++i++ +k+g +e
  MMETSP1061-20121228|545_1 823 IVYSSVINCWAKSGLPE 839
                58***********9876 PP

  == domain 17    score: 27.0 bits;  conditional E-value: 1.6e-10
  TIGR00756   1 vtyntlisglckagrveeAlelfdeMke 28 
                +tyn+++++++++g+++ Ale++++Mk 
  MMETSP1061-20121228|545_1 867 ITYNSVLDAYARNGDIKGALEIWELMKN 894
                69************************96 PP

  == domain 18    score: 4.1 bits;  conditional E-value: 0.0031
  TIGR00756   2 tyntlisglckagr....veeAlelfdeMk 27 
                +yntli++ +k+ +    ++eA++l++eM+
  MMETSP1061-20121228|545_1 909 SYNTLINAWSKSSKqkeaPKEAEKLLKEMI 938
                799999999887664444567777777775 PP

  == domain 19    score: 2.3 bits;  conditional E-value: 0.011
  TIGR00756   1 vtyntlisglckagrv 16 
                ++y+t+i++ +k+  +
  MMETSP1061-20121228|545_1 953 IVYSTVINCWAKSDLP 968
                58********998765 PP

  == domain 20    score: 23.1 bits;  conditional E-value: 2.8e-09
  TIGR00756    1 vtyntlisglckagrveeAlelfdeMke 28  
                 +tyn+++++++++g++  A+e+++ M++
  MMETSP1061-20121228|545_1  997 ITYNSVLDAYARQGDIGGAMEILKMMED 1024
                 69************************86 PP

  == domain 21    score: 5.2 bits;  conditional E-value: 0.0013
  TIGR00756   16 veeAlelfdeMkergivPd 34  
                 + eA+ l ++M++r+i P+
  MMETSP1061-20121228|545_1 1056 PQEAENLIQKMIDRDIHPT 1074
                 47999999*****999998 PP

  == domain 22    score: 1.4 bits;  conditional E-value: 0.023
  TIGR00756    2 tyntlisglckagrve 17  
                 +++ +i++++k++ ++
  MMETSP1061-20121228|545_1 1077 SFTGVINAFGKSNLPD 1092
                 8999******998775 PP

  == domain 23    score: 22.7 bits;  conditional E-value: 3.7e-09
  TIGR00756    1 vtyntlisglckagrveeAlelfdeMke 28  
                 +tyn++i+++++ ++ e A+++++ M+e
  MMETSP1061-20121228|545_1 1120 ITYNSVIDAFARKRDAEGAKSVWKMMEE 1147
                 69************************98 PP

  == domain 24    score: 2.6 bits;  conditional E-value: 0.0093
  TIGR00756    2 tyntlisglckag 14  
                 tyntl+++ +++ 
  MMETSP1061-20121228|545_1 1162 TYNTLLNAWSRSE 1174
                 9*****9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.15s 00:00:00.70 Elapsed: 00:00:00.60
# Mc/sec: 2738.77
//
Query:       MMETSP1061-20121228|544_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 994.75
//
Query:       MMETSP1061-20121228|546_1  [L=924]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-225  747.5   3.7     6e-225  746.7   2.6    1.2  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
     2e-149  495.5   2.3      1e-77  259.6   0.0    2.2  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
   1.1e-133  444.4   2.2    3.9e-74  248.0   0.0    2.8  3  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
   1.2e-114  381.7   6.5    4.9e-65  218.0   0.0    3.4  4  TIGR03689 pup_AAA: proteasome ATPase
      9e-19   65.2   0.0    4.9e-10   36.4   0.0    2.2  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    6.9e-13   46.1   0.0    5.4e-06   23.5   0.0    2.5  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    2.4e-10   37.8   0.0    2.5e-06   24.6   0.0    2.4  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    9.5e-10   35.8   2.0     0.0031   14.3   0.1    4.5  4  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    1.7e-09   35.4   0.0    0.00032   18.1   0.0    2.4  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    7.4e-08   29.5   0.2      0.018   11.7   0.0    3.5  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    1.8e-06   25.1   0.0     0.0014   15.6   0.0    2.3  2  TIGR02881 spore_V_K: stage V sporulation protein K
    3.3e-06   23.7   0.4     0.0021   14.4   0.0    2.6  2  TIGR00763 lon: ATP-dependent protease La
    4.3e-06   24.4   0.0       0.02   12.4   0.0    2.5  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
    5.2e-06   22.7   1.9      0.027   10.5   0.0    3.8  4  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    6.2e-06   23.5   0.0      0.017   12.1   0.0    2.4  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    4.1e-05   20.1   1.9       0.03   10.6   0.0    2.7  3  TIGR00602 rad24: checkpoint protein rad24
    5.4e-05   20.7   0.1       0.17    9.3   0.0    2.4  2  TIGR00678 holB: DNA polymerase III, delta' subunit
    0.00025   18.5   0.0       0.49    7.7   0.0    2.9  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    0.00031   17.3   0.1        0.2    8.1   0.0    2.6  3  TIGR02902 spore_lonB: ATP-dependent protease LonB
    0.00078   16.4   0.0      0.058   10.2   0.0    2.3  2  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
    0.00087   15.7   0.0       0.48    6.7   0.0    2.5  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
      0.001   16.2   3.9       0.17    8.9   0.0    2.8  3  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0014   16.1   0.8      0.041   11.3   0.0    2.3  2  TIGR01351 adk: adenylate kinases
     0.0018   14.7   0.1      0.025   11.0   0.0    2.3  2  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0032   15.3   3.2       0.14   10.0   0.0    2.8  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0034   14.8   0.0       0.14    9.5   0.0    2.4  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
     0.0082   12.6   0.0       0.62    6.4   0.0    2.3  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
     0.0095   13.1   0.3        1.3    6.2   0.0    3.2  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
  ------ inclusion threshold ------
      0.031   12.0   0.0        3.4    5.4   0.0    2.3  2  TIGR00150 HI0065_YjeE: ATPase, YjeE family
       0.07    9.3   2.1       0.39    6.9   0.0    2.5  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      0.094    9.6   7.5       0.22    8.4   0.0    3.7  4  TIGR00362 DnaA: chromosomal replication initiator protein DnaA


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  746.7   2.6  4.6e-227    6e-225      10     730 ..     119     891 ..     113     893 .. 0.89

  Alignments for each domain:
  == domain 1    score: 746.7 bits;  conditional E-value: 4.6e-227
  TIGR01243  10 ykrdvgrgivridrrtaeelgvepgdvveiekger.kavaivyrsfld......d..kgkgiirldgylrknagvaigdrvkvkrae.vkeakkvvlapt................qkirlgrdfedfvkekllg..kvlskgekvvvsvlegelklvvvst.....tpagivrvteatevelkeeaveeeketkvpevtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenap....siifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvdldklaevthgfvgadlaalakeaamaalrrllregkidleaeeipkevleelkvtkkdfkealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekei................lkdlkvkkkdflealkkvkpsvskedlrvyeklakelk 730
                y ++ g  +v + ++ + e+g+  gd v i++  + k++a v+ +         d       + +     knagv  gd+v+v  a  vk  k v+++p                 q++  ++ fed++   +    ++l +g++ +v   +gel++  v+         +   v e t +e   ea+eee + ++ +  y++igg  +    +relvelplkh el++klgi+ p+gvll gp g gkt +a+ava e+gayf++ingpe++sk  gese +lr+ f++ae na     +iifideid+iap+re++ gevekr+v+qlltlmdglk   kv+v+ atnr  +++palrrpgrfdre+++g+pd +gr eilqi+tr+m l +dvdl+ la  thg+vgadl  l+ eaa+ ++r  +  g id++ +++ k++l+ + v  k f  a+  v ps lre  vevp+vkwed+ggle+vk+el e+v++p+ + + f k+g+ p kgvl++gppg gktllaka+a+e+ganfi+++gpe+l++w gese ++re+f kar a+p+i+++de+d+ia +rg+ ++ +    dr++nq+lte+dg+   ++v vi+atnrpdildpa++rpgrld+li++p pd ++rl if+   r+ pl   vdle la+ t g++gadi  ++  a+ +a+re+++++ + k eae++e                  +++ ++k++f  a+ + + sv+ +dl  +e++a+++k
  MMETSP1061-20121228|546_1 119 YSGEEGHSVVGMTEKAMMEMGLFEGDTVSIKGKRGkKTMASVAVLSETdvaalsDgnSDSAAVGMSNDAMKNAGVRAGDKVTVTAAPnVKFGKAVLISPMlnslklagideetmtdQNGDEVKLFEDYLAPYFTDkfRTLYRGDNFIVDGPKGELEFQCVEIdsvekDGDNACIVVEETVLECDGEAIEEEVD-DLENAGYDQIGGASKHLAAVRELVELPLKHSELWRKLGINTPRGVLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEANAEdyngAIIFIDEIDSIAPRREKAGGEVEKRIVSQLLTLMDGLKSTSKVVVMAATNRASTIEPALRRPGRFDRELDMGIPDEQGRLEILQIKTRDMRLGDDVDLEFLARNTHGYVGADLQQLCMEAALECIRGKM--GLIDFDKDQVDKKILDSIVVEGKHFDHAVGIVAPSSLRENQVEVPDVKWEDVGGLEDVKRELHETVQYPVEHADKFIKFGMSPSKGVLFYGPPGCGKTLLAKAIANEAGANFISIKGPELLTQWFGESEANVRELFDKARAASPCILMFDEMDSIAKTRGSGQGGSseAGDRVINQILTEIDGVGARKNVFVIGATNRPDILDPAVIRPGRLDQLIYIPLPDFKSRLAIFQASLRKAPLDPAVDLEVLARSTHGFSGADISEICTTASKLAIREAILAAEERKQEAEDDEEedesssssskektkavGEQMLITKRHFNFAMSRARRSVTEKDLVLFEEFAEKQK 891
                7788999***********************965432344444433222011111311334578999999***************9966**99999998863222222221111111222334445566655555433578899999999999999998775411111345678899*************9999.9*************************************************************************************************999544449*****************************************************************************************************************************866..6**************************************************************************************************************************************************************98775433499**********************************************************************************************************888888888887777788888888888888788999****************************99876 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.0   0.7   2.3e-72     3e-70     101     351 ..     298     549 ..     283     561 .. 0.91
   2 !  259.6   0.0   7.6e-80     1e-77     115     347 ..     589     821 ..     579     830 .. 0.97

  Alignments for each domain:
  == domain 1    score: 235.0 bits;  conditional E-value: 2.3e-72
  TIGR01242 101 ptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakeka....psiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkv 351
                  e d  +   ev++  +  y++iGG  k l  +re velplk+ el++++Gi+ p+Gvll Gp G+Gkt +a+ava et a f  + g e++ k  Ge    +r  f+ a   a     +iifideid+ia +r +  ++G+ e +r + qll+ +dG+++  +v v+aatnr   ++pal rpGrfdr +++ +pd++Grleil+i+tr m+l +dvdle la+ t+G +Gadl+ +++ea +  ir +   +
  MMETSP1061-20121228|546_1 298 VLECDGEAIEEEVDDLENAGYDQIGGASKHLAAVRELVELPLKHSELWRKLGINTPRGVLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEANAedynGAIIFIDEIDSIAPRREK--AGGEVE-KRIVSQLLTLMDGLKSTSKVVVMAATNRASTIEPALRRPGRFDRELDMGIPDEQGRLEILQIKTRDMRLGDDVDLEFLARNTHGYVGADLQQLCMEAALECIRGKMGLI 549
                556677777889************************************************************************************************9887665222269*************965..577776.79999**************************************************************************************************876655 PP

  == domain 2    score: 259.6 bits;  conditional E-value: 7.6e-80
  TIGR01242 115 erpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfairee 347
                e p+v++ed+GGle+  re++e+v+ p+ + + f + G+ p kGvl+yGppG+Gktllaka+a+e+ a fi + g el+ ++ Ge    vre+f+ a+  +p+i++ de+d+ia  r   + +     +r + q+l+e+dG  +r nv vi+atnr+dildpa++rpGr+d+li +plpd++ rl i++   rk+ l + vdle la+ t+G+sGad+  i+t a   aire 
  MMETSP1061-20121228|546_1 589 EVPDVKWEDVGGLEDVKRELHETVQYPVEHADKFIKFGMSPSKGVLFYGPPGCGKTLLAKAIANEAGANFISIKGPELLTQWFGESEANVRELFDKARAASPCILMFDEMDSIAKTRGSGQGGSSEAGDRVINQILTEIDGVGARKNVFVIGATNRPDILDPAVIRPGRLDQLIYIPLPDFKSRLAIFQASLRKAPLDPAVDLEVLARSTHGFSGADISEICTTASKLAIREA 821
                78****************************************************************************************************************999888777777789******************************************************************************************************96 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.6   0.3   4.5e-60     6e-58      52     286 ..     315     551 ..     303     570 .. 0.91
   2 !  248.0   0.0     3e-76   3.9e-74      44     283 ..     584     824 ..     566     856 .. 0.92
   3 ?   -1.4   0.0       1.2   1.5e+02      32      64 ..     860     892 ..     847     898 .. 0.83

  Alignments for each domain:
  == domain 1    score: 194.6 bits;  conditional E-value: 4.5e-60
  TIGR01241  52 kvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakkna....PciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtl 286
                +  ++++ G+ +    + e+v+  Lk+++ ++klG  +P+Gvll+Gp G Gkt +a+ava e g  ff i G + +    G   + +r  fe+a  na     +iifiDeiD++  +r+++ gg  +   + + qlL+ mDG++++ +v+v+aatnr+  +++aL rPGrfDr++ +  Pd +gr eil++ +++++l ++vdl+ +ar+t G+ Gadl+ l+ eaal + r +   ++ 
  MMETSP1061-20121228|546_1 315 NAGYDQIGGASKHLAAVRELVELpLKHSELWRKLGINTPRGVLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEANAedynGAIIFIDEIDSIAPRREKA-GG--EVEKRIVSQLLTLMDGLKSTSKVVVMAATNRASTIEPALRRPGRFDRELDMGIPDEQGRLEILQIKTRDMRLGDDVDLEFLARNTHGYVGADLQQLCMEAALECIRGKMGLIDF 551
                5568899999999999*****987*********************************************************************99998444459************99993.33..5566789***********************************************************************************************999987766654 PP

  == domain 2    score: 248.0 bits;  conditional E-value: 3e-76
  TIGR01241  44 klleeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkke 283
                + ++ e + v+++dv G++++k+el e v++ + +++kf k+G    kGvl++GpPG GktLlaka+a eag  f+si G +++  + G   + vr+lf++a+ ++Pci++ De+D++ ++rg g gg+ +  ++ +nq+L+e+DG +++++v v+ atnrpd+LD+a++rPGr+D+ + + +Pd+k r +i++  ++k  l++ vdl+ +ar+t GfsGad++ ++  a+ la r+   +
  MMETSP1061-20121228|546_1 584 RENQVEVPDVKWEDVGGLEDVKRELHETVQYpVEHADKFIKFGMSPSKGVLFYGPPGCGKTLLAKAIANEAGANFISIKGPELLTQWFGESEANVRELFDKARAASPCILMFDEMDSIAKTRGSGQGGSSEAGDRVINQILTEIDGVGARKNVFVIGATNRPDILDPAVIRPGRLDQLIYIPLPDFKSRLAIFQASLRKAPLDPAVDLEVLARSTHGFSGADISEICTTASKLAIREAILA 824
                555666789**********************77899******************************************************************************************************************************************************************************************************9986544 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.2
  TIGR01241  32 gsrifslgkskaklleeekvkvtfkdvaGidea 64 
                ++r f+++ s+a+   +ek  v f++ a  ++a
  MMETSP1061-20121228|546_1 860 TKRHFNFAMSRARRSVTEKDLVLFEEFAEKQKA 892
                4579*********************99977665 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.17        23     102     160 ..     153     209 ..     103     275 .. 0.75
   2 !  163.4   0.1   1.3e-50   1.8e-48     170     376 ..     304     502 ..     276     537 .. 0.88
   3 !  218.0   0.0   3.7e-67   4.9e-65     148     380 ..     562     782 ..     551     809 .. 0.90
   4 ?   -2.4   0.0       2.3   3.1e+02     439     461 ..     802     824 ..     790     840 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.17
  TIGR03689 102 daervGeivtlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglal 160
                +++++  ++ l e+  d  al  +++d++ v +  +a+ ++++raGd++ v  + ++ +
  MMETSP1061-20121228|546_1 153 GKKTMASVAVLSET--DVAALSDGNSDSAAVGMSNDAMKNAGVRAGDKVTVTAAPNVKF 209
                44455555555543..3357777788888888888999999******999987665554 PP

  == domain 2    score: 163.4 bits;  conditional E-value: 1.3e-50
  TIGR03689 170 elvleevPdv...tyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilak 376
                e + eev d+   +y++iGG ++++  +r+ velP++h el+r+ ++++P+Gvll GP GcGkt +a+ava+           + +yf+ i GPe+++k  Ge+e ++r  fe a  +a++ +  ++f+de+ds+   r      +ve  +v qll+ +dG++s + v+v+ a+nr   i+Pa+ rPGr+d  + ++ Pd+++  +il+ 
  MMETSP1061-20121228|546_1 304 EAIEEEVDDLenaGYDQIGGASKHLAAVRELVELPLKHSELWRKLGINTPRGVLLTGPSGCGKTAMARAVAAE----------TGAYFFVINGPEVISKRAGESETNLRRAFEDAEANAEDYNGAIIFIDEIDSIAPRRE-KAGGEVEKRIVSQLLTLMDGLKSTSKVVVMAATNRASTIEPALRRPGRFDRELDMGIPDEQGRLEILQI 502
                45567777753338********************************************************963..........457*************************************************87665.56789**********************************************************999974 PP

  == domain 3    score: 218.0 bits;  conditional E-value: 3.7e-67
  TIGR03689 148 dsllvdlk.aglaleavpkseveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGv..ssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylte 380
                ds++v+ k  + a+  v+ s+ +e  + evPdv ++d+GGl++   +++++v+ P  h + + ++++ p kGvl+yGPPGcGktl+aka+an  +          + f++ikGPell ++ Ge+e ++r +f++ar +    +P +++fdemds+ +trGsG   ss+    v+ q+l+e+dGv + +nv viGa+nr d++dPa++rPGrld  i i  Pd ++  +i++  l +
  MMETSP1061-20121228|546_1 562 DSIVVEGKhFDHAVGIVAPSSLRENQV-EVPDVKWEDVGGLEDVKRELHETVQYPVEHADKFIKFGMSPSKGVLFYGPPGCGKTLLAKAIANEAG----------ANFISIKGPELLTQWFGESEANVRELFDKARAA----SPCILMFDEMDSIAKTRGSGQggSSEAGDRVINQILTEIDGVGARKNVFVIGATNRPDILDPAVIRPGRLDQLIYIPLPDFKSRLAIFQASLRK 782
                777877542578888888887777655.8**************************************************************9644..........57****************************964....7****************997544999999**********************************************************9988865 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 2.3
  TIGR03689 439 sGamlanivdrakkaaikdeleg 461
                sGa + +i   a k ai++++ +
  MMETSP1061-20121228|546_1 802 SGADISEICTTASKLAIREAILA 824
                9*****************99944 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   3.7e-09   4.9e-07     311     422 ..     352     465 ..     321     511 .. 0.80
   2 !   36.4   0.0   3.7e-12   4.9e-10     280     427 ..     600     746 ..     591     750 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 3.7e-09
  TIGR03922 311 rskHlllaGPPGtGkttiArvvaki.yaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLggvlFlDEayaLvekrdgakddfGleaidtLLarlEndRd..rlvviiA 422
                + + +ll GP G Gkt++Ar+va    a + v++ pev+  +Ra      +  + +  ++  +   g ++F+DE+ ++  +r++a+ ++   ++ +LL  ++  +   ++vv+ A
  MMETSP1061-20121228|546_1 352 TPRGVLLTGPSGCGKTAMARAVAAEtGAYFFVINGPEVIS-KRAGESETNLRRAFEDAEANAEDYNGAIIFIDEIDSIAPRREKAGGEVEKRIVSQLLTLMDGLKStsKVVVMAA 465
                456789***************9865157789*******96.5666566666777777888888899***********************************97554114555554 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 3.7e-12
  TIGR03922 280 GlervkeqvaalkssvevalvRaerGlava.qrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvek...rdgakddfGleaidtLLarlEn..dRdrlvviiAGYekd 427
                Gle+vk+++   +++v+  +  a++ ++     sk +l+ GPPG Gkt +A+++a+  aG       + + ++  +l++++ gesea+  el dka      +l +DE+ ++ ++   ++g + + G  +i+++L  ++    R ++ vi+A  + d
  MMETSP1061-20121228|546_1 600 GLEDVKREL---HETVQYPVEHADKFIKFGmSPSKGVLFYGPPGCGKTLLAKAIANE-AGA------NFISIKGPELLTQWFGESEANVRELFDKARAaspCILMFDEMDSIAKTrgsGQGGSSEAGDRVINQILTEIDGvgARKNVFVIGATNRPD 746
                777888765...345555555555555543146899*******************97.564......66778999*******************986522269**********9963335557899***********99633788888888876655 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   5.1e-07   6.8e-05      31      96 ..     354     431 ..     330     436 .. 0.71
   2 !   23.5   0.0   4.1e-08   5.4e-06      32      66 ..     632     666 ..     596     673 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 5.1e-07
  TIGR00635  31 dhvllyGPPGlGkttlakiiakelgvklkitsgpal..ekpg....Dlaailtale......egdvlfiDeihrlska 96 
                  vll+GP G Gkt++a+ +a+e g+   +++gp++  +++g    +l  ++   e      +g ++fiDei  +++ 
  MMETSP1061-20121228|546_1 354 RGVLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVisKRAGesetNLRRAFEDAEanaedyNGAIIFIDEIDSIAPR 431
                569*******************************86333343111134333332221111224679999999988876 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 4.1e-08
  TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpal 66 
                 vl+yGPPG Gkt lak ia+e g++   ++gp+l
  MMETSP1061-20121228|546_1 632 GVLFYGPPGCGKTLLAKAIANEAGANFISIKGPEL 666
                58*******************************98 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.9e-08   2.5e-06     120     200 ..     356     434 ..     347     453 .. 0.86
   2 !   10.7   0.0   0.00031     0.041     119     199 ..     632     706 ..     611     735 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.9e-08
  TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksen 200
                +ll Gp+G Gkt +a+++a+e    f + +   +      Ge  e  l + ++ a+ + e  +  ii+ideid ia + e+
  MMETSP1061-20121228|546_1 356 VLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVIS-KRAGES-ETNLRRAFEDAEANAEDYNGAIIFIDEIDSIAPRREK 434
                89********************99998888777654.456776.66689**************************988776 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00031
  TIGR00382 119 nilliGptGsGktllaqtlakeldvpfa.iadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarkse 199
                 +l+ Gp G Gktlla+++a+e    f  i     lt   + Ge   n+  +l+++a      a   i+  de+d ia+   
  MMETSP1061-20121228|546_1 632 GVLFYGPPGCGKTLLAKAIANEAGANFIsIKGPELLT--QWFGESEANV-RELFDKAR----AASPCILMFDEMDSIAKTRG 706
                47889*****************999875155555555..4789986665.77888764....67889999999999998755 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0015       0.2      46      77 ..     352     383 ..     340     389 .. 0.88
   2 !   14.3   0.1   2.4e-05    0.0031     246     292 ..     415     460 ..     388     499 .. 0.79
   3 !    7.6   0.0    0.0026      0.35      46      81 ..     628     664 ..     611     687 .. 0.79
   4 ?    1.1   0.0      0.24        32     244     279 ..     686     720 ..     675     733 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0015
  TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfik 77 
                +P+ +l+ G++G Gkt +ar +a  ++a f  
  MMETSP1061-20121228|546_1 352 TPRGVLLTGPSGCGKTAMARAVAAETGAYFFV 383
                79********************9988887765 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.4e-05
  TIGR00390 246 eesGiifideidkiakkgessgadvsreGvqrdllPiveGstvstky 292
                 +  iifideid ia + e++g +v +  v   ll +++G + ++k 
  MMETSP1061-20121228|546_1 415 YNGAIIFIDEIDSIAPRREKAGGEVEKRIVS-QLLTLMDGLKSTSKV 460
                34569********************999775.699999998877775 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0026
  TIGR00390  46 vP.knilmiGstGvGkteiarrlaklaeaPfikveat 81 
                 P k +l  G+ G Gkt +a+ +a  a+a fi +   
  MMETSP1061-20121228|546_1 628 SPsKGVLFYGPPGCGKTLLAKAIANEAGANFISIKGP 664
                554889**************************99765 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.24
  TIGR00390 244 rveesGiifideidkiakkgessgadvsreGvqrdl 279
                r+ +  i++ de+d iak    sg+  s e   r +
  MMETSP1061-20121228|546_1 686 RAASPCILMFDEMDSIAKTR-GSGQGGSSEAGDRVI 720
                66778899*********987.888888888766655 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.4e-06   0.00032      20      56 ..     352     388 ..     343     403 .. 0.87
   2 !   14.6   0.0   2.9e-05    0.0038      22      58 ..     631     667 ..     609     678 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.4e-06
  TIGR02640  20 sgypvhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                + + v l+GP+G+Gkt++a++va++ +    ++nG +
  MMETSP1061-20121228|546_1 352 TPRGVLLTGPSGCGKTAMARAVAAETGAYFFVINGPE 388
                567899*******************999999999865 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 2.9e-05
  TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvllnGdael 58 
                  v + GP G+Gkt la ++a++ +   + ++G + l
  MMETSP1061-20121228|546_1 631 KGVLFYGPPGCGKTLLAKAIANEAGANFISIKGPELL 667
                4589*********************999999997765 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0    0.0002     0.026      38      62 ..     351     375 ..     341     379 .. 0.87
   2 ?    2.0   0.0      0.12        16     124     175 ..     411     468 ..     392     477 .. 0.65
   3 !   11.7   0.0   0.00014     0.018      38      64 ..     627     654 ..     616     662 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.0002
  TIGR02928  38 srpsnvliyGktGtGKtavtkkvlk 62 
                ++p+ vl+ G++G+GKta++++v  
  MMETSP1061-20121228|546_1 351 NTPRGVLLTGPSGCGKTAMARAVAA 375
                79*******************9976 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.12
  TIGR02928 124 leeredsliivLDEiDklv.kkeade......lLyeLsraeengdlekakvsvigisnd 175
                  e+++ +ii +DEiD++  ++e+        ++ +L+ + +  +   +kv v++ +n 
  MMETSP1061-20121228|546_1 411 NAEDYNGAIIFIDEIDSIApRREKAGgevekrIVSQLLTLMDGLKST-SKVVVMAATNR 468
                45778889999999999976554433455555566666654444433.56666666655 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.00014
  TIGR02928  38 srp.snvliyGktGtGKtavtkkvlkel 64 
                ++p + vl yG++G+GKt+ +k++ +e+
  MMETSP1061-20121228|546_1 627 MSPsKGVLFYGPPGCGKTLLAKAIANEA 654
                5551569****************99986 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0041      0.54      45     139 ..     356     453 ..     340     509 .. 0.82
   2 !   15.6   0.0   1.1e-05    0.0014       8     136 ..     598     722 ..     592     746 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0041
  TIGR02881  45 mifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslarGGekdfG...keaidtlvkemed 139
                ++++G  G Gkt++ar +a        +  G  +  +ra      + ++ + + ++ +   G ++fide  s+a   ek  G   k  + +l+  m+ 
  MMETSP1061-20121228|546_1 356 VLLTGPSGCGKTAMARAVAAETGAYFFVINGPEVISKRAGESETNLRRAFEDAEANAEDYNGAIIFIDEIDSIAPRREKAGGeveKRIVSQLLTLMDG 453
                5789999***********9999888888899999999**9999999999999999999****************988886552225556666666665 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.1e-05
  TIGR02881   8 lvGleevkelikeiyalilin.ekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalG...Gvlfideaysla..rGGekdfGkeaidtlvke 136
                + Gle+vk+ ++e   + + +  k  + g+  +k v   +f G PG Gkt +a+ +a+           ++i ++  +l+ ++ G++  ++re+  ka      +l+ de  s+a  rG  +    ea d ++++
  MMETSP1061-20121228|546_1 598 VGGLEDVKRELHETVQYPVEHaDKFIKFGMSPSKGV---LFYGPPGCGKTLLAKAIANE---A----GANFISIKGPELLTQWFGESEANVRELFDKARAaspCILMFDEMDSIAktRGSGQGGSSEAGDRVINQ 722
                569999999999987775443155567777777765...69*************99863...3....3578999999***************999876542227******9999744555555556666666554 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.1    0.0038       0.5     357     383 ..     357     383 ..     348     386 .. 0.88
   2 !   14.4   0.0   1.6e-05    0.0021     354     384 ..     631     661 ..     596     663 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0038
  TIGR00763 357 clvGPPGVGKtSlaksiAkalnrkfvr 383
                 l+GP G GKt++a+++A  ++  f+ 
  MMETSP1061-20121228|546_1 357 LLTGPSGCGKTAMARAVAAETGAYFFV 383
                699***************999888875 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 1.6e-05
  TIGR00763 354 kilclvGPPGVGKtSlaksiAkalnrkfvrl 384
                k + ++GPPG GKt lak+iA+  + +f+ +
  MMETSP1061-20121228|546_1 631 KGVLFYGPPGCGKTLLAKAIANEAGANFISI 661
                5578*****************9999999865 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00015      0.02       2      26 ..     357     381 ..     356     396 .. 0.81
   2 !    9.3   0.0    0.0015      0.19       3      28 ..     635     660 ..     633     681 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00015
  TIGR01313   2 vlmGvaGsGkstiakelakklgakf 26 
                +l G++G+Gk+++a+++a++ ga f
  MMETSP1061-20121228|546_1 357 LLTGPSGCGKTAMARAVAAETGAYF 381
                689*****************99765 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0015
  TIGR01313   3 lmGvaGsGkstiakelakklgakfie 28 
                  G+ G+Gk+ +ak++a++ ga+fi 
  MMETSP1061-20121228|546_1 635 FYGPPGCGKTLLAKAIANEAGANFIS 660
                56999****************99974 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0017      0.23     484     515 ..     351     381 ..     306     395 .. 0.83
   2 ?    1.2   0.1      0.14        18     274     301 ..     413     440 ..     391     466 .. 0.73
   3 !   10.5   0.0    0.0002     0.027     484     516 ..     627     659 ..     607     667 .. 0.86
   4 ?   -1.2   0.0       0.7        93     256     304 ..     668     717 ..     656     726 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0017
  TIGR02639 484 nkPvgsflfvGptGvGktelakqLaeelgvel 515
                n+P g+ l +Gp+G Gkt +a+++a+e g  +
  MMETSP1061-20121228|546_1 351 NTPRGV-LLTGPSGCGKTAMARAVAAETGAYF 381
                677776.669***************9988766 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.14
  TIGR02639 274 ekeedailfiDeihtivgagatsggsld 301
                e+ + ai+fiDei  i      +gg+++
  MMETSP1061-20121228|546_1 413 EDYNGAIIFIDEIDSIAPRREKAGGEVE 440
                445678*********9988888888776 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.0002
  TIGR02639 484 nkPvgsflfvGptGvGktelakqLaeelgvell 516
                 +P    lf+Gp G Gkt lak++a+e g +++
  MMETSP1061-20121228|546_1 627 MSPSKGVLFYGPPGCGKTLLAKAIANEAGANFI 659
                5788899********************999987 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.7
  TIGR02639 256 tkyrGdfeerlkevveeiekeedailfiDeihtivga.gatsggsldasn 304
                t++ G+ e+ ++e+ ++ ++ +  il  De+  i    g++ ggs +a +
  MMETSP1061-20121228|546_1 668 TQWFGESEANVRELFDKARAASPCILMFDEMDSIAKTrGSGQGGSSEAGD 717
                789999****************************9753788888888765 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00013     0.017      31      51 ..     354     374 ..     341     391 .. 0.86
   2 !    8.6   0.0    0.0015       0.2      23      51 ..     623     651 ..     606     663 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00013
  TIGR03265  31 elvclLGPsGCGkttLLriia 51 
                  v l GPsGCGkt++ r++a
  MMETSP1061-20121228|546_1 354 RGVLLTGPSGCGKTAMARAVA 374
                557899*************98 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0015
  TIGR03265  23 islsvkkgelvclLGPsGCGkttLLriia 51 
                i++ ++ +  v + GP GCGkt L ++ia
  MMETSP1061-20121228|546_1 623 IKFGMSPSKGVLFYGPPGCGKTLLAKAIA 651
                666677777799***************98 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.0       5.2   6.9e+02     340     370 ..      69      99 ..      64     118 .. 0.60
   2 !   10.6   0.0   0.00023      0.03     113     136 ..     356     379 ..     346     405 .. 0.81
   3 !    8.1   0.0    0.0013      0.17     113     147 ..     633     667 ..     622     711 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 5.2
  TIGR00602 340 kkrkstksdaevskskrkgkhssleenqvie 370
                k +k  k   ++  +k  gk++s+ + ++++
  MMETSP1061-20121228|546_1  69 KSKKKKKKTTAAASKKSTGKQKSTSDTDEVD 99 
                3344444444555556666666666666654 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00023
  TIGR00602 113 LLitGPsGCgKsTvikiLsKelgi 136
                 L+tGPsGCgK+   +  + e g 
  MMETSP1061-20121228|546_1 356 VLLTGPSGCGKTAMARAVAAETGA 379
                689**********99999988775 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0013
  TIGR00602 113 LLitGPsGCgKsTvikiLsKelgikvqewlNpvll 147
                 L  GP+GCgK+   k ++ e g +++    p ll
  MMETSP1061-20121228|546_1 633 VLFYGPPGCGKTLLAKAIANEAGANFISIKGPELL 667
                6889******************9998876666554 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0018      0.24      14      37 ..     353     376 ..     347     388 .. 0.91
   2 !    9.3   0.0    0.0013      0.17      15      37 ..     631     653 ..     626     660 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0018
  TIGR00678  14 ahAlLfaGpeGvGkealaealaka 37 
                +  +L++Gp+G+Gk+a+a+a+a++
  MMETSP1061-20121228|546_1 353 PRGVLLTGPSGCGKTAMARAVAAE 376
                6789*****************986 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0013
  TIGR00678  15 hAlLfaGpeGvGkealaealaka 37 
                + +Lf+Gp+G+Gk+ la+a+a++
  MMETSP1061-20121228|546_1 631 KGVLFYGPPGCGKTLLAKAIANE 653
                679*****************976 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0048      0.64      36     107 ..     351     433 ..     336     524 .. 0.57
   2 !    7.7   0.0    0.0037      0.49      40      65 ..     632     657 ..     610     705 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0048
  TIGR03420  36 kaerllylwGesgsGksHLLqAacaaaee.....agksaiylplkelaqll......vevlegleqaelvalDdvealagere 107
                ++ r + l G+sg+Gk+ + +A++a++ +     +g ++i   + e +  l      +e+ +++ + +++ +D+++++a +re
  MMETSP1061-20121228|546_1 351 NTPRGVLLTGPSGCGKTAMARAVAAETGAyffviNGPEVISKRAGESETNLrrafedAEANAEDYNGAIIFIDEIDSIAPRRE 433
                5677899****************998654111114444444444444333311111112223333445677777777776664 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0037
  TIGR03420  40 llylwGesgsGksHLLqAacaaaeea 65 
                 + ++G++g+Gk+ L +A++++a ++
  MMETSP1061-20121228|546_1 632 GVLFYGPPGCGKTLLAKAIANEAGAN 657
                57899**************9998654 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0051      0.67      85     109 ..     352     376 ..     344     380 .. 0.86
   2 ?   -3.7   0.0       5.4   7.2e+02     175     189 ..     416     430 ..     413     432 .. 0.86
   3 !    8.1   0.0    0.0015       0.2      87     115 ..     631     659 ..     621     694 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0051
  TIGR02902  85 npqhviiyGppGvGktaaarlvlee 109
                 p+ v++ Gp G Gkta ar v  e
  MMETSP1061-20121228|546_1 352 TPRGVLLTGPSGCGKTAMARAVAAE 376
                5999****************98655 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 5.4
  TIGR02902 175 hGGvlfideiGelhp 189
                 G ++fidei  + p
  MMETSP1061-20121228|546_1 416 NGAIIFIDEIDSIAP 430
                589*******98887 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0015
  TIGR02902  87 qhviiyGppGvGktaaarlvleeakksaa 115
                + v+ yGppG Gkt  a+ + +ea  +  
  MMETSP1061-20121228|546_1 631 KGVLFYGPPGCGKTLLAKAIANEAGANFI 659
                45999*************99999977655 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.048       6.4      99     165 ..     311     374 ..     305     378 .. 0.75
   2 !   10.2   0.0   0.00044     0.058     115     167 ..     599     653 ..     591     661 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.048
  TIGR02788  99 ddyeekGffdeaveestelsdadeellellkagdikeFlklaiaakkniiisGgtgsgKTTflkalv 165
                dd+e+ G +d+     ++ ++a +el+el  + + + + kl i++ + ++++G +g gKT + +a+ 
  MMETSP1061-20121228|546_1 311 DDLENAG-YDQIGG-ASKHLAAVRELVELPLK-HSELWRKLGINTPRGVLLTGPSGCGKTAMARAVA 374
                6666666.554333.34455666788888766.57788899********************999875 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00044
  TIGR02788 115 telsdadeellellk..agdikeFlklaiaakkniiisGgtgsgKTTflkalvkl 167
                  l+d+++el e+ +   ++ ++F+k  +   k ++  G +g gKT + ka+ ++
  MMETSP1061-20121228|546_1 599 GGLEDVKRELHETVQypVEHADKFIKFGMSPSKGVLFYGPPGCGKTLLAKAIANE 653
                5678899999998762257999*****************************9875 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0036      0.48     165     198 ..     343     376 ..     326     380 .. 0.82
   2 !    6.2   0.0    0.0051      0.67     176     199 ..     631     654 ..     617     659 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0036
  TIGR02903 165 allaklaspfpqhiilyGppGvGkttaarlalee 198
                 l  kl    p+ ++l Gp G Gkt++ar +  e
  MMETSP1061-20121228|546_1 343 ELWRKLGINTPRGVLLTGPSGCGKTAMARAVAAE 376
                5677888999*******************87654 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0051
  TIGR02903 176 qhiilyGppGvGkttaarlaleea 199
                + +++yGppG Gkt  a+ + +ea
  MMETSP1061-20121228|546_1 631 KGVLFYGPPGCGKTLLAKAIANEA 654
                5699***********999776665 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0013      0.17      39      58 ..     356     375 ..     350     377 .. 0.89
   2 !    7.4   0.0    0.0036      0.48      38      58 ..     632     652 ..     626     657 .. 0.90
   3 ?   -2.2   0.1         3     4e+02     273     329 ..     803     856 ..     795     881 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0013
  TIGR02397  39 yLfsGprGvGKTsiArilAk 58 
                 L++Gp G+GKT++Ar +A 
  MMETSP1061-20121228|546_1 356 VLLTGPSGCGKTAMARAVAA 375
                699*************9985 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0036
  TIGR02397  38 ayLfsGprGvGKTsiArilAk 58 
                  Lf+Gp G+GKT +A+ +A+
  MMETSP1061-20121228|546_1 632 GVLFYGPPGCGKTLLAKAIAN 652
                579**************9996 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 3
  TIGR02397 273 gvdleklledliellrdlllvkktk.selleveeeeeeslkekaeklslekllellki 329
                g+d++++++   +l  + +++++ + ++  e+ eee+e     ++++s+ek + + + 
  MMETSP1061-20121228|546_1 803 GADISEICTTASKLAIREAILAAEErKQEAEDDEEEDE----SSSSSSKEKTKAVGEQ 856
                67777777777776655555555542333333333333....3333333333333332 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1      0.12        16       2      24 ..     356     378 ..     355     389 .. 0.89
   2 !   11.3   0.0   0.00031     0.041       2      29 ..     633     660 ..     632     667 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.12
  TIGR01351   2 lvllGpPGsGKGTqakrlaeklg 24 
                ++l Gp G+GK  +a+ +a ++g
  MMETSP1061-20121228|546_1 356 VLLTGPSGCGKTAMARAVAAETG 378
                6899*************999876 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00031
  TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhis 29 
                +++ GpPG+GK   ak +a++ g   is
  MMETSP1061-20121228|546_1 633 VLFYGPPGCGKTLLAKAIANEAGANFIS 660
                789*******************999888 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.25        33     213     231 ..     355     373 ..     346     376 .. 0.84
   2 !   11.0   0.0   0.00019     0.025     198     231 ..     617     650 ..     602     653 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.25
  TIGR00368 213 nllllGPPGsGktllakrl 231
                 +ll GP G Gkt +a+ +
  MMETSP1061-20121228|546_1 355 GVLLTGPSGCGKTAMARAV 373
                589**********999876 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00019
  TIGR00368 198 qrakraleiaaaGghnllllGPPGsGktllakrl 231
                ++a + ++  ++    +l+ GPPG Gktllak +
  MMETSP1061-20121228|546_1 617 EHADKFIKFGMSPSKGVLFYGPPGCGKTLLAKAI 650
                56777777778888899**************987 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.034       4.5       3      25 ..     356     378 ..     355     413 .. 0.76
   2 !   10.0   0.0     0.001      0.14       6      30 ..     636     660 ..     632     665 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.034
  TIGR02173   3 ivisGpPGsGkttvakilaekls 25 
                + ++Gp G Gkt++a+ +a + +
  MMETSP1061-20121228|546_1 356 VLLTGPSGCGKTAMARAVAAETG 378
                5689**************98765 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.001
  TIGR02173   6 sGpPGsGkttvakilaeklslklis 30 
                 GpPG Gkt +ak +a++ + ++is
  MMETSP1061-20121228|546_1 636 YGPPGCGKTLLAKAIANEAGANFIS 660
                69******************99998 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0011      0.14      26      49 ..     348     371 ..     344     377 .. 0.80
   2 ?    2.4   0.0      0.17        22      26      51 ..     625     650 ..     620     655 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0011
  TIGR02982  26 leiepgeiviltGpsGsGkttllt 49 
                l i++   v+ltGpsG+Gkt++  
  MMETSP1061-20121228|546_1 348 LGINTPRGVLLTGPSGCGKTAMAR 371
                556677779***********9865 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.17
  TIGR02982  26 leiepgeiviltGpsGsGkttlltli 51 
                + ++p   v++ Gp G+Gkt l   i
  MMETSP1061-20121228|546_1 625 FGMSPSKGVLFYGPPGCGKTLLAKAI 650
                556777889**********9886655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0047      0.62     361     381 ..     353     373 ..     345     396 .. 0.81
   2 ?    3.6   0.0     0.034       4.5     341     382 ..     611     651 ..     578     661 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0047
  TIGR02868 361 GervavvGasGaGKstLlall 381
                 + v ++G+sG+GK++++ ++
  MMETSP1061-20121228|546_1 353 PRGVLLTGPSGCGKTAMARAV 373
                567899*********998765 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.034
  TIGR02868 341 svsypgaeevlkgvsldlepGervavvGasGaGKstLlalla 382
                +v+yp + ++ k +++ ++p + v   G+ G+GK+ L++++a
  MMETSP1061-20121228|546_1 611 TVQYPVE-HADKFIKFGMSPSKGVLFYGPPGCGKTLLAKAIA 651
                4566655.34778999999999***************99886 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0095       1.3      30      47 ..     356     373 ..     345     380 .. 0.82
   2 ?    2.9   0.0     0.093        12       9      47 ..     612     650 ..     606     663 .. 0.81
   3 ?   -1.8   0.0       2.6   3.4e+02     120     167 ..     775     824 ..     770     830 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0095
  TIGR00972  30 taliGpsGcGkstllrsl 47 
                + l GpsGcGk+++ r++
  MMETSP1061-20121228|546_1 356 VLLTGPSGCGKTAMARAV 373
                5689*********99986 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.093
  TIGR00972   9 lfygekealkdvnleikknkvtaliGpsGcGkstllrsl 47 
                + y  ++a k +++ ++  k + + Gp GcGk+ l +++
  MMETSP1061-20121228|546_1 612 VQYPVEHADKFIKFGMSPSKGVLFYGPPGCGKTLLAKAI 650
                5566667777788888888888999*******9999887 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 2.6
  TIGR00972 120 iveesLkkaalwdevk.dklkksalsLsGGqqqrlci.aralavePevlL 167
                i ++sL+ka l  +v  + l +s+ + sG     +c  a  la++  +l 
  MMETSP1061-20121228|546_1 775 IFQASLRKAPLDPAVDlEVLARSTHGFSGADISEICTtASKLAIREAILA 824
                6688999999999997356899999******9999963778999887775 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.026       3.4      25      48 ..     356     379 ..     343     387 .. 0.88
   2 ?    4.1   0.0     0.065       8.6      23      49 ..     631     657 ..     613     666 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.026
  TIGR00150  25 vlLkGdlGaGKttlvkgllkglGi 48 
                vlL+G  G GKt++ ++++ + G 
  MMETSP1061-20121228|546_1 356 VLLTGPSGCGKTAMARAVAAETGA 379
                799***************998885 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.065
  TIGR00150  23 tvvlLkGdlGaGKttlvkgllkglGiq 49 
                + vl +G  G GKt l k+++++ G +
  MMETSP1061-20121228|546_1 631 KGVLFYGPPGCGKTLLAKAIANEAGAN 657
                446789999************999976 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.003      0.39     474     500 ..     350     374 ..     337     378 .. 0.80
   2 ?    1.2   0.0      0.15        20     477     500 ..     628     651 ..     614     653 .. 0.82
   3 ?   -4.5   0.5       8.1   1.1e+03      37      70 ..     819     852 ..     810     863 .. 0.47

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.003
  TIGR00954 474 fevksGnhlLiiGPnGcGKsslfRilg 500
                ++ +  + +L++GP GcGK ++ R ++
  MMETSP1061-20121228|546_1 350 INTP--RGVLLTGPSGCGKTAMARAVA 374
                4444..459*************99875 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.15
  TIGR00954 477 ksGnhlLiiGPnGcGKsslfRilg 500
                   + +L  GP GcGK  l + ++
  MMETSP1061-20121228|546_1 628 SPSKGVLFYGPPGCGKTLLAKAIA 651
                556779**********99887765 PP

  == domain 3    score: -4.5 bits;  conditional E-value: 8.1
  TIGR00954  37 kkravdaredesskeelkkesknselekkkkkal 70 
                ++ ++ a+e+++ +e+++ e ++s+   k+k++ 
  MMETSP1061-20121228|546_1 819 REAILAAEERKQEAEDDEEEDESSSSSSKEKTKA 852
                4455555554444444444333333222222332 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       4.7   6.3e+02      78      94 ..      68      84 ..      28     110 .. 0.56
   2 ?    3.0   0.0     0.069       9.1     216     300 ..     441     521 ..     351     527 .. 0.52
   3 ?    8.4   0.0    0.0016      0.22     139     164 ..     632     657 ..     614     662 .. 0.85
   4 ?   -2.8   0.2         4   5.3e+02      67      99 ..     818     850 ..     803     876 .. 0.42

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.7
  TIGR00362 78 eesekeskkeeekekee 94
               ++s+k++kk++++++++
  MMETSP1061-20121228|546_1 68 KKSKKKKKKTTAAASKK 84
               11111111111111111 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.069
  TIGR00362 216 ektqeeffhtfnalleknkqivltsDrapkelegleeRLkSRfewGLvvdieppdletrlaILkkkaeeeklelpeev.lefiakk 300
                +++  +++ +++ l + +k +v+++ +  + +e    R   Rf+  L + i  pd + rl+IL+ k++ ++l   ++v lef+a++
  MMETSP1061-20121228|546_1 441 KRIVSQLLTLMDGLKSTSKVVVMAATNRASTIEPAL-RRPGRFDRELDMGI--PDEQGRLEILQIKTRDMRLG--DDVdLEFLARN 521
                245556667777777777777777777777777543.33567777665444..77777777777666554443..33325566655 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0016
  TIGR00362 139 PlfiyGgvGlGKTHLlqAigneilkk 164
                 +++yG  G GKT L +Ai+ne+ ++
  MMETSP1061-20121228|546_1 632 GVLFYGPPGCGKTLLAKAIANEAGAN 657
                5899*****************98665 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 4
  TIGR00362  67 leieltveeeeeesekeskkeeekekeeeeeks 99 
                ++ ++ ++ee+++++++ ++e e+++++++ek+
  MMETSP1061-20121228|546_1 818 IREAILAAEERKQEAEDDEEEDESSSSSSKEKT 850
                333333332222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                        31  (0.00755729); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.89u 0.16s 00:00:01.05 Elapsed: 00:00:01.08
# Mc/sec: 1129.24
//
Query:       MMETSP1061-20121228|552_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-19   68.5   0.2    7.8e-14   49.7   0.1    2.5  3  TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
    4.3e-16   56.9   2.2    1.4e-12   45.3   0.2    2.3  2  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
    1.7e-15   55.1   0.4    4.2e-12   44.0   0.3    2.2  2  TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS
    1.2e-13   48.9   1.3    5.2e-13   46.8   0.9    1.9  1  TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
    4.2e-12   43.9   0.0    3.6e-09   34.3   0.0    2.4  2  TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor
    5.2e-11   40.5   0.3    8.4e-05   20.2   0.0    2.2  2  TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
    7.8e-11   39.9   0.3    0.00075   17.0   0.0    3.1  3  TIGR02392 rpoH_proteo: alternative sigma factor RpoH
    1.6e-09   35.7   0.1    2.3e-05   22.1   0.0    2.3  2  TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
    1.9e-09   35.2   0.0    7.8e-07   26.6   0.0    2.2  2  TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor
    7.7e-08   29.9   0.1      5e-05   20.7   0.0    2.2  2  TIGR02941 Sigma_B: RNA polymerase sigma-B factor
    2.9e-06   24.8   0.2      0.008   13.5   0.3    2.2  2  TIGR02850 spore_sigG: RNA polymerase sigma-G factor
    3.2e-06   24.6   0.1     0.0034   14.7   0.0    2.4  2  TIGR02859 spore_sigH: RNA polymerase sigma-H factor
    2.6e-05   22.0   0.1      0.014   13.1   0.1    2.2  2  TIGR02885 spore_sigF: RNA polymerase sigma-F factor
  ------ inclusion threshold ------
      0.011   13.8   0.0      0.027   12.5   0.0    1.7  1  TIGR02985 Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1


Domain annotation for each model (and alignments):
>> TIGR02393  RpoD_Cterm: RNA polymerase sigma factor RpoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.2   9.3e+02     119     155 ..      49      85 ..      40     120 .. 0.70
   2 !   16.4   0.0   3.9e-06    0.0012      20      50 ..     146     176 ..     121     201 .. 0.75
   3 !   49.7   0.1   2.7e-16   7.8e-14     108     233 ..     261     390 ..     241     394 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.2
  TIGR02393 119 kvkeikklakepvslekpigeeedselgdfiedeeve 155
                + ++ + + +   sl++     ++ +l d +ede+ +
  MMETSP1061-20121228|552_1  49 RTRTAATIPRTRTSLNTVTQPVNNPRLVDILEDEKGH 85 
                5555666667777888887788888888888887654 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 3.9e-06
  TIGR02393  20 ylnrGlsfldliqeGniGllkavekfdykkg 50 
                + +r     dliqeG iGl++a++ f+++ +
  MMETSP1061-20121228|552_1 146 HSQRRSLHDDLIQEGVIGLMQALKTFEHQAR 176
                555666678******************9864 PP

  == domain 3    score: 49.7 bits;  conditional E-value: 2.7e-16
  TIGR02393 108 elaeklgleaekvkeikklak.epv..slekpigeeedselgdfiedeevespedaaakellkeeleevle.tlsereekvlklryGledgkektleevgkefnvtrerirqieskalrklrhpskskkl 233
                 l e+l++e e +  i++ +   p+  s+ + i + +d  +   + +++++sp+d a k ++  ++++ l  +l + e +++++r+Gl+dg++kt +e++ e+n+t  ++r++++ al klr+   ++++
  MMETSP1061-20121228|552_1 261 FLDESLQYEGEDLMWIQSQSVaAPLrdSIPESIDDGQDGVMDSILMENQATSPDDLALKDMILYNVDDFLGnNLDDIESQIIQMRFGLDDGTPKTQKEIAYELNLTIRKVRKLQKVALGKLRARFTERYI 390
                455566677777777766543134444888999*************************************989*************************************************98877766 PP

>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00014      0.04     102     122 ..     154     174 ..      78     177 .. 0.80
   2 !   45.3   0.2   4.8e-15   1.4e-12     205     298 .]     287     382 ..     250     382 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00014
  TIGR02997 102 lDLiqeGslGleravekFdpt 122
                 DLiqeG +Gl++a   F+++
  MMETSP1061-20121228|552_1 154 DDLIQEGVIGLMQALKTFEHQ 174
                59****************975 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 4.8e-15
  TIGR02997 205 vsLdakvGkeedtelgdlled.eeeePeeeveeellkedleellae.LkererevlrlrfGledeeeltlaeigeelnlsrervrqiekkalkklr 298
                 s+ + + + +d  +  +l + ++++P++   ++++  +++++l + L++ e +++++rfGl+d++++t +ei+ elnl+  +vr+++k al klr
  MMETSP1061-20121228|552_1 287 DSIPESIDDGQDGVMDSILMEnQATSPDDLALKDMILYNVDDFLGNnLDDIESQIIQMRFGLDDGTPKTQKEIAYELNLTIRKVRKLQKVALGKLR 382
                4667778888888888877665999*******************655***********************************************98 PP

>> TIGR02394  rpoS_proteo: RNA polymerase sigma factor RpoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00067       0.2      75      93 ..     155     173 ..     144     201 .. 0.86
   2 !   44.0   0.3   1.4e-14   4.2e-12     178     282 ..     288     393 ..     250     395 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00067
  TIGR02394  75 dlieeGnlGllkavekfdP 93 
                dli+eG +Gl++a++ f+ 
  MMETSP1061-20121228|552_1 155 DLIQEGVIGLMQALKTFEH 173
                9***************985 PP

  == domain 2    score: 44.0 bits;  conditional E-value: 1.4e-14
  TIGR02394 178 sldapldedsekslldlladekseePeelvqnedlkelieall.aelnekerevlarrfGlreyekatleevakelgltrervrqiqvealkklkrileregvdke 282
                s+  ++d+ +   +  +l ++++++P++l  ++ +   ++++l ++l++ e ++++ rfGl +  ++t +e+a el+lt  +vr++q  al kl+ +++++ ++ +
  MMETSP1061-20121228|552_1 288 SIPESIDDGQDGVMDSILMENQATSPDDLALKDMILYNVDDFLgNNLDDIESQIIQMRFGLDDGTPKTQKEIAYELNLTIRKVRKLQKVALGKLRARFTERYISDD 393
                6667777777777888899999*******************99568**************************************************9998877665 PP

>> TIGR02937  sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.9   1.8e-15   5.2e-13      24     163 ..     150     383 ..     124     385 .. 0.71

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 1.8e-15
  TIGR02937  24 dsldaeDlvqegflglikaldkfdpe....ssfktyaysvirnsiidalr....rkrelkvtneveiske...............................................................................keeeeledeed.....................rpeeqeeaeelrerleqale.kLperereilklryle....glslkeiAeelgisqetvsrilkraikkLkk 163
                +sl ++Dl+qeg++gl++al+ f+++    +sf+++a      +i  al     ++++   ++      +                                                                               +         +                     +p++ + ++ +   ++++l  +L++ e +i+++r+       +++keiA el+++ + v++++k a+ kL+ 
  MMETSP1061-20121228|552_1 150 RSL-HDDLIQEGVIGLMQALKTFEHQarpnESFESFAKA----QIQIALDgftlERAKGMGNP------TgtgkplsmestveiadpletasyyynqddwevreglvldngktvqreqlvedfldeslqyegedlmwiqsqsvaaplrdSI--------PesiddgqdgvmdsilmenqatSPDDLALKDMILYNVDDFLGnNLDDIESQIIQMRFGLddgtPKTQKEIAYELNLTIRKVRKLQKVALGKLRA 383
                333.47********************5555555555555....55555443334333232333......1233334555555555556666666666666666666666666666676666666666666666666666666666555544........0444455559999999999999*******************99**************55555588***************************96 PP

>> TIGR02846  spore_sigmaK: RNA polymerase sigma-K factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0025      0.72      75      96 ..     153     174 ..     120     179 .. 0.82
   2 !   34.3   0.0   1.2e-11   3.6e-09     161     226 ..     319     385 ..     273     386 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0025
  TIGR02846  75 vddlisiGtiGlikaidsfdte 96 
                 ddli  G iGl++a+++f+++
  MMETSP1061-20121228|552_1 153 HDDLIQEGVIGLMQALKTFEHQ 174
                69*****************875 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 1.2e-11
  TIGR02846 161 kklevkklkkkl.kvlkerekevielryGlkdgeektqreiakklgisrsyvsriekkalkkllkel 226
                k + + ++ + l + l++ e ++i++r+Gl dg+ ktq+eia +l+++   v +++k al kl  ++
  MMETSP1061-20121228|552_1 319 KDMILYNVDDFLgNNLDDIESQIIQMRFGLDDGTPKTQKEIAYELNLTIRKVRKLQKVALGKLRARF 385
                4556667777778899**********************************************98765 PP

>> TIGR02980  SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.9e-07   8.4e-05      23      60 ..     146     185 ..     123     190 .. 0.76
   2 !   18.3   0.1   1.1e-06   0.00031     113     225 ..     263     384 ..     247     386 .. 0.64

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.9e-07
  TIGR02980  23 frsrgeeleDlvQvgtiGLlkaidrfdlsr..gvkFstya 60 
                +++r + ++Dl+Q g+iGL++a++ f+ +   +++F+++a
  MMETSP1061-20121228|552_1 146 HSQRRSLHDDLIQEGVIGLMQALKTFEHQArpNESFESFA 185
                4566677*******************987533789****9 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 1.1e-06
  TIGR02980 113 aeelevseeevvealeaaksysassldasve.dddgdeialldtlgeedeeleeveeklalkell.........akLdererrilllrffed....ktQseiaeelGiSQmqvSRlekralkklree 225
                 e l+++ e+ + + + +    a+ l +s+  + d+ +  ++d++  e++++    + lalk+++         ++Ld+ e +i+++rf  d    ktQ+eia el +   +v +l+k al klr +
  MMETSP1061-20121228|552_1 263 DESLQYEGEDLMWIQSQSV---AAPLRDSIPeSIDDGQDGVMDSILMENQAT--SPDDLALKDMIlynvddflgNNLDDIESQIIQMRFGLDdgtpKTQKEIAYELNLTIRKVRKLQKVALGKLRAR 384
                4556666666554433322...344555554344555666777776666654..3344444444323333333478*************75434459***************************975 PP

>> TIGR02392  rpoH_proteo: alternative sigma factor RpoH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.035        10     181     242 ..      72     133 ..      50     139 .. 0.86
   2 !   16.0   0.0   5.3e-06    0.0015      62      97 ..     153     190 ..     150     201 .. 0.72
   3 !   17.0   0.0   2.6e-06   0.00075     217     268 ..     332     385 ..     274     387 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.035
  TIGR02392 181 seelieyLadkeseaeeeleeeeeeekqkeklkealekldersrriieaRwlede.kltLeel 242
                + +l+++L+d++ +++ +l++  ++ +++++l+  l  +++ s r    Rw++d  k+tL+ l
  MMETSP1061-20121228|552_1  72 NPRLVDILEDEKGHINPQLAQLIWKWEKQQRLNLDLPDFENYSTRT-GLRWVNDLvKKTLRAL 133
                457899*********************************9999885.7899999779999877 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 5.3e-06
  TIGR02392  62 qadliqegniGLmkavkrfdPer..gvRlvsfavhWik 97 
                + dliqeg iGLm+a+k f+ +   +  + sfa   i+
  MMETSP1061-20121228|552_1 153 HDDLIQEGVIGLMQALKTFEHQArpNESFESFAKAQIQ 190
                579****************9764223456666655555 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 2.6e-06
  TIGR02392 217 ekldersrriieaRwlede..kltLeelaaeygvsaeRvRqiekkalkklkaal 268
                ++ld+ + +ii+ R   d+  ++t +e+a e+++   +vR++ k al kl+a +
  MMETSP1061-20121228|552_1 332 NNLDDIESQIIQMRFGLDDgtPKTQKEIAYELNLTIRKVRKLQKVALGKLRARF 385
                47999999******86554469*****************************876 PP

>> TIGR02479  FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   7.7e-08   2.3e-05      25      63 ..     152     192 ..     131     195 .. 0.82
   2 !   11.4   0.0   0.00014     0.042     109     223 ..     266     385 ..     246     386 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 7.7e-08
  TIGR02479  25 eleDliqaGmlgLldaierydee..kgvkFetyavlRirGa 63 
                  +Dliq G++gL++a++ ++++   + +Fe++a+  i+ a
  MMETSP1061-20121228|552_1 152 LHDDLIQEGVIGLMQALKTFEHQarPNESFESFAKAQIQIA 192
                579*****************87622699********99866 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00014
  TIGR02479 109 lgldlkevrkaleeinaesl.vsldellesedeelsladliedkksedpeeelereelkeklaeai.ekLsereklvlsLyYeee....LnlkEigevLelsesRvsQlhskalkkLrakl 223
                l+ + +++  ++++  a+ l  s+ e +++++++  +++++ ++++++p++ + ++++  ++++ + ++L++ e +++++ +  +     + kEi+  L+l+  +v  l++ al kLra++
  MMETSP1061-20121228|552_1 266 LQYEGEDLMWIQSQSVAAPLrDSIPESIDDGQDG-VMDSILMENQATSPDDLALKDMILYNVDDFLgNNLDDIESQIIQMRFGLDdgtpKTQKEIAYELNLTIRKVRKLQKVALGKLRARF 385
                5555555555555544444315889999999998.4788899999999**********99***999568*************7542333699**************************986 PP

>> TIGR02835  spore_sigmaE: RNA polymerase sigma-E factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0041       1.2      80     101 ..     154     175 ..     145     186 .. 0.90
   2 !   26.6   0.0   2.7e-09   7.8e-07     177     229 ..     332     384 ..     270     388 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0041
  TIGR02835  80 edlvsigtiglikavntfdpek 101
                +dl+  g igl++a++tf+ + 
  MMETSP1061-20121228|552_1 154 DDLIQEGVIGLMQALKTFEHQA 175
                79****************9765 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 2.7e-09
  TIGR02835 177 kklndrekkilelrfgladgeektqkevadllgisqsyisrlekrilkrlkke 229
                ++l+d e +i+++rfgl dg+ ktqke+a  l ++   + +l+k  l +l+  
  MMETSP1061-20121228|552_1 332 NNLDDIESQIIQMRFGLDDGTPKTQKEIAYELNLTIRKVRKLQKVALGKLRAR 384
                578999**************************************999999865 PP

>> TIGR02941  Sigma_B: RNA polymerase sigma-B factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.7e-07     5e-05      45      88 ..     142     187 ..     123     204 .. 0.84
   2 !    7.1   0.0    0.0025      0.72     163     251 ..     288     383 ..     259     386 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.7e-07
  TIGR02941  45 iaykyskgsaihedlvqvGmvGllgairrydlsi..gkafeafaip 88 
                 a+ +s+  ++h+dl+q G++Gl+ a++ ++     +++fe+fa  
  MMETSP1061-20121228|552_1 142 TAFPHSQRRSLHDDLIQEGVIGLMQALKTFEHQArpNESFESFAKA 187
                57778999**********************987533789****965 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0025
  TIGR02941 163 svddkieadsdGstvalldlvGesedgydqtekrlvlekil....pilserekeiiecifien....lsqketGerlGisqmhvsrlkrraikklke 251
                s+ ++i+  +dG   ++l +  ++    d + k ++l ++     + l++ e +ii++ f  +     +qke    l ++  +v +l++ a+ kl+ 
  MMETSP1061-20121228|552_1 288 SIPESIDDGQDGVMDSIL-MENQATSPDDLALKDMILYNVDdflgNNLDDIESQIIQMRFGLDdgtpKTQKEIAYELNLTIRKVRKLQKVALGKLRA 383
                555666666666555444.22334444567788899876641113567899********9633122268*************************985 PP

>> TIGR02850  spore_sigG: RNA polymerase sigma-G factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00061      0.18      56      83 ..     148     175 ..     120     192 .. 0.77
   2 !   13.5   0.3   2.7e-05     0.008     158     251 ..     279     382 ..     233     385 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00061
  TIGR02850  56 nrgeyvddlfqvgcigllksidnfdlsq 83 
                +r    ddl+q g+igl++++  f+ + 
  MMETSP1061-20121228|552_1 148 QRRSLHDDLIQEGVIGLMQALKTFEHQA 175
                577788*****************98654 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2.7e-05
  TIGR02850 158 daiqdpvslfepiyndggdpiyvmdqisdeknk...deswleeialkeal....krlnereklilklrff..eg..ktqmevaeeigisqaqvsrlekaalkqlk 251
                +++  p+    p   d+g+   vmd i  e++    d+  l+++ l +      ++l++ e  i+++rf   +g  ktq e+a e+ ++  +v +l+k al +l+
  MMETSP1061-20121228|552_1 279 QSVAAPLRDSIPESIDDGQD-GVMDSILMENQAtspDDLALKDMILYNVDdflgNNLDDIESQIIQMRFGldDGtpKTQKEIAYELNLTIRKVRKLQKVALGKLR 382
                45555554444444344433.3677776655531224555555544432222236899***********53344559************************9987 PP

>> TIGR02859  spore_sigH: RNA polymerase sigma-H factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.1e-05    0.0034      46      79 ..     153     188 ..     103     202 .. 0.77
   2 !    7.4   0.1    0.0019      0.57     111     189 ..     294     376 ..     285     390 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.1e-05
  TIGR02859  46 kediiqegmiglykairdykedk..lssfkafaelc 79 
                ++d+iqeg+igl +a++ ++++     sf++fa+  
  MMETSP1061-20121228|552_1 153 HDDLIQEGVIGLMQALKTFEHQArpNESFESFAKAQ 188
                58****************987652257999999754 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0019
  TIGR02859 111 deesdrtlldvvseakvadpeeliiskeelakieskleellselelkvlvlyl...dg..ksyqeiaedlnrhvksidnalqrv 189
                d+  d  +  ++ e++ + p++l +    l ++++ l + l ++e +++++ +   dg  k+ +eia +ln  ++ + + lq+v
  MMETSP1061-20121228|552_1 294 DDGQDGVMDSILMENQATSPDDLALKDMILYNVDDFLGNNLDDIESQIIQMRFgldDGtpKTQKEIAYELNLTIRKVRK-LQKV 376
                4555555556889999********************************9986433345558999*******88877643.5554 PP

>> TIGR02885  spore_sigF: RNA polymerase sigma-F factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0     0.004       1.2      35      59 ..     150     174 ..     123     189 .. 0.82
   2 !   13.1   0.1   4.7e-05     0.014     109     230 ..     251     384 ..     238     385 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.004
  TIGR02885  35 GyeledlfqiGciGlvkaidkfdls 59 
                    +dl q G iGl++a++ f+++
  MMETSP1061-20121228|552_1 150 RSLHDDLIQEGVIGLMQALKTFEHQ 174
                45579*****************986 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.7e-05
  TIGR02885 109 klerePtiee.laealglekeevvaalesakslqslydtvhe..ddgdpillldkiadegeeesdllekialkeal.........kkldererqiillryfkd....ktqtevakilGisqvqvsrlekkvlkklkek 230
                 ++re  +e+ l+e l++e e+++   +s + ++ l d++ e  ddg+   ++d i  e  ++ +  + +alk+++         ++ld+ e qii +r+  d    ktq e+a  l ++  +v +l+k +l kl+ +
  MMETSP1061-20121228|552_1 251 TVQREQLVEDfLDESLQYEGEDLMWI-QSQSVAAPLRDSIPEsiDDGQD-GVMDSILME--NQATSPDDLALKDMIlynvddflgNNLDDIESQIIQMRFGLDdgtpKTQKEIAYELNLTIRKVRKLQKVALGKLRAR 384
                56788888764678888888887654.4555556666666542245554.566666433..333444444444443333333335689************87656668************************999975 PP

>> TIGR02985  Sig70_bacteroi1: RNA polymerase sigma-70 factor, Bacteroides expansion family 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   9.3e-05     0.027     131     161 ..     354     384 ..     337     385 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 9.3e-05
  TIGR02985 131 lsnkeIAeelgiSvkTVekhikkAlkkLrke 161
                +++keIA el+++++ V+k  k Al kLr++
  MMETSP1061-20121228|552_1 354 KTQKEIAYELNLTIRKVRKLQKVALGKLRAR 384
                799**************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1523.53
//
Query:       MMETSP1061-20121228|548_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 2392.83
//
Query:       MMETSP1061-20121228|553_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 1123.52
//
Query:       MMETSP1061-20121228|557_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 503.96
//
Query:       MMETSP1061-20121228|554_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-22   75.3   0.0    1.1e-21   74.9   0.0    1.1  1  TIGR00311 aIF-2beta: putative translation initiation factor aIF-2, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00311  aIF-2beta: putative translation initiation factor aIF-2, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   2.6e-25   1.1e-21       2     132 ..      73     210 ..      72     211 .. 0.84

  Alignments for each domain:
  == domain 1    score: 74.9 bits;  conditional E-value: 2.6e-25
  TIGR00311   2 yeelleraiekladk...vve.kerfevpkveilieGnrtiiknfrevakalnrdeehllkyllkelGtaGnleg.Grlilqgkfteellkkriedyvrkyvicrecnkpdtkiike..grvlllkclacGakrpvrn 132
                y+ell+  ++ l  +    v+ k+r   p   ++   ++t+  nf+e+   ++r+++h++++++ elGt Gn++g  rli++gk+ ++ +++ +  yv +yv c+ c +p+t + k+   r+++l c  cG+ r v  
  MMETSP1061-20121228|554_1  73 YDELLDLVVDLLQTNnpaLVDkKKRNIKPPQMTMLTSKKTMWVNFQEICSMMQRSPDHVMQFFFAELGTDGNMDGnQRLIIRGKYVPKYIESLLRKYVVEYVTCEMCRSPNTVLKKDssTRLSFLECSDCGSTRSVAA 210
                66777777665543311134435666667778888999***********************************96369**********************************9999733599**********998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 948.67
//
Query:       MMETSP1061-20121228|556_1  [L=1152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.21s 00:00:00.68 Elapsed: 00:00:00.53
# Mc/sec: 2868.90
//
Query:       MMETSP1061-20121228|561_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 450.58
//
Query:       MMETSP1061-20121228|559_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0087   12.1   0.0      0.027   10.5   0.0    1.6  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   6.5e-06     0.027     176     269 ..      43     123 ..      21     138 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.5e-06
  TIGR04075 176 rdekGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsm.vkagaal.cvpGnheekllrkl 269
                ++   P  + Gd+hG + +l el++ +G +  e+              + +++Gd+vdrG  s +++ l  ++ v+  + +  ++Gnhe++ + ++
  MMETSP1061-20121228|559_1  43 QAVAAPVTVCGDIHGQFYDLMELFR-IGGNCPET--------------NYLLMGDYVDRGYFSLETVTLLIALkVRYRNRItILRGNHESRQITQV 123
                5566788888888888888888765.44433322..............34789*********99988876654377665551579****9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 1127.26
//
Query:       MMETSP1061-20121228|560_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 749.36
//
Query:       MMETSP1061-20121228|564_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.7    2.5  17.5        6.3    2.1  12.1    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  12.1    0.0015       6.3     943     997 ..     148     199 ..     114     200 .] 0.50

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0015
  TIGR00927 943 detgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeee 997
                ++t+e e++a+   +  +d     ge++ d  d e++++e++e+e+e+e+e++++
  MMETSP1061-20121228|564_1 148 KQTEE-EMIANW--DKFNDRSITPGEDDDDDDDDEDDDDEDDEDEDEDEDEDDDD 199
                33333.333332..23344444444555555555555555555444444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 977.70
//
Query:       MMETSP1061-20121228|563_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   15.5   0.0       0.02   12.0   0.0    2.1  2  TIGR03448 mycothiol_MshD: mycothiol synthase
  ------ inclusion threshold ------
      0.022   12.7   0.0        0.6    8.1   0.0    2.6  2  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0     1e-05      0.02      71      96 ..     383     408 ..     330     416 .. 0.67
   2 ?    0.9   0.0     0.025        51     268     290 ..     446     469 ..     437     472 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1e-05
  TIGR03448  71 dsemaElvvhPaaRrrGigkalvral 96 
                 +  ++l+v+P +Rr+G++++lv+a 
  MMETSP1061-20121228|563_1 383 RPYLSDLAVDPGHRRQGLARKLVEAS 408
                345789*****************986 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.025
  TIGR03448 268 YveadneaAvrtYe.kLgFtvaev 290
                 ve+ neaA+ +Y+ +Lg+ +++ 
  MMETSP1061-20121228|563_1 446 RVEETNEAAIGLYQdRLGYVRTQW 469
                59***********75899998765 PP

>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00029       0.6      35      88 ..     356     416 ..     322     419 .. 0.70
   2 ?    1.7   0.0     0.029        58      89     112 ..     440     464 ..     429     470 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00029
  TIGR01575  35 llaeeggkvvGyiv.......vqivldeaeilniavkpeyqgqGiGraLlkelikeakerg 88 
                +  +e +++vG+         +q+ l    ++ +av+p  ++qG++r+L+++ ++++ erg
  MMETSP1061-20121228|563_1 356 QKETETSELVGFCDvdarpckTQLRLPRPYLSDLAVDPGHRRQGLARKLVEASERFILERG 416
                445556677777764555555666666777899*****************99888777665 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.029
  TIGR01575  89 vkeifLEVResNvaAqaLYk.klgf 112
                +  +++ V e N+aA+ LY+ +lg+
  MMETSP1061-20121228|563_1 440 ALWLWIRVEETNEAAIGLYQdRLGY 464
                55577788899********735666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.25
# Mc/sec: 3030.47
//
Query:       MMETSP1061-20121228|555_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-180  597.9   0.2   2.2e-180  597.7   0.1    1.0  1  TIGR00936 ahcY: adenosylhomocysteinase
    2.9e-06   24.6   0.1    5.1e-06   23.8   0.1    1.3  1  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit
    0.00014   18.8   0.1    0.00021   18.2   0.1    1.2  1  TIGR00465 ilvC: ketol-acid reductoisomerase
    0.00082   16.1   0.8     0.0012   15.5   0.6    1.1  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
     0.0028   14.6   0.1     0.0047   13.9   0.1    1.3  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
  ------ inclusion threshold ------
      0.051   10.3   0.1      0.089    9.5   0.1    1.3  1  TIGR01035 hemA: glutamyl-tRNA reductase


Domain annotation for each model (and alignments):
>> TIGR00936  ahcY: adenosylhomocysteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  597.7   0.1  3.3e-183  2.2e-180       1     416 []       6     473 ..       6     473 .. 0.98

  Alignments for each domain:
  == domain 1    score: 597.7 bits;  conditional E-value: 3.3e-183
  TIGR00936   1 ykvkdlslaeeGrkkielaerempvLkkireefaeekPlkGvriaaclhltvktavLietLkalGaevalascnilstqddvaaalakakgvpvfawkGeteeeyyealekvle........kepniilddGadlivlvhk..........................................kreellekvlGvseetttGvirLralakeGkLkfpviavndavtkslfdnryGtgqslldgilratnlliaGktvvvaGyGwvGkGvaerlrGlGarvivtevdpikaleaamdGfevvtmeeaakegdifvtatGnkdvireehlekmkdgailanaGhfdveidvkaLeelakekkevkkqvdeyklkdGrriillaeGrLvnLaaaeGhpsevmdmsfanqalaaeellkkkdk..lek.kvyrlpkeldeavarlklealgveldkLteeqkeylesweeGt 416
                ykv+d+sla+ Grk ielae emp+L++ r+e+  +kP++G+r++++lh+t++tavLiet+k+lGa+v++ scni+stqd++aaa+a+++  +vfawkGet eey+e+  ++l+        + p+ii+ddG+d++ l+h+                                          k+++++  + GvseetttGv+rL+ ++k+G+L fp+i+vnd+vtks+fdn yG+++sl dgi+rat++++aGk++v++GyG+vGkG+a+++r  G  v vte+dpi al+a m+G++v+t+e+  ++gdif+t+tGnk +++++h++kmk++ai++n+Ghfd+eid++ L + a+++ ++k+qvd++ ++d + +i+laeGrL+nL++a+Ghps+vm++sf+nq+la+ el+++kd   +++ kvy+lpk+lde+va+l+l +lg +l+ L++eq+ y++ + eG+
  MMETSP1061-20121228|555_1   6 YKVADISLADYGRKDIELAEVEMPGLMACRDEYGPSKPFDGARVSGSLHMTIQTAVLIETVKELGADVRWCSCNIFSTQDHAAAAIARDESAAVFAWKGETLEEYWECTLNALTwsdddgkgHGPDIIIDDGGDMTLLIHEgkkaedlflkdgtlpdptstdnaefkivltiikrllesgetdKWNKIATRCHGVSEETTTGVHRLYTMEKNGALLFPAINVNDSVTKSKFDNLYGCKHSLPDGIMRATDVMLAGKKAVICGYGDVGKGCAHAMRANGCVVYVTEIDPICALQACMEGYTVTTLEDVLETGDIFITTTGNKGILMKDHMAKMKNNAIVGNIGHFDNEIDMDGLMK-ATKRINIKPQVDKFVFEDNHGVIVLAEGRLLNLGCATGHPSFVMSCSFTNQVLAQLELYTEKDSgkYQRgKVYVLPKNLDEKVAKLHLPSLGAKLTILSKEQSDYVGIPIEGP 473
                9****************************************************************************************************************99******99**************************************************************************************************************************************************************************************************************************************86.66789*****************************************************9988743365538*************************************99996 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.1   7.5e-09   5.1e-06     142     236 ..     251     343 ..     248     356 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 7.5e-09
  TIGR02853 142 iestdftihgsrvlvlGlGrtGktiarllsalgakvsvaareskdlarilelglepvelkeleekvaeiDivintiPal.vltkdvlsklpkhavi 236
                ++ td+ + g ++++ G+G +Gk  a++++a g+ v v+     d   +l++++e  +++ le+ ++  Di i t  ++ +l kd ++k++++a++
  MMETSP1061-20121228|555_1 251 MRATDVMLAGKKAVICGYGDVGKGCAHAMRANGCVVYVTE---IDPICALQACMEGYTVTTLEDVLETGDIFITTTGNKgILMKDHMAKMKNNAIV 343
                7899********************************9975...45556789999*******************9987644**************98 PP

>> TIGR00465  ilvC: ketol-acid reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1     3e-07   0.00021       1      69 [.     258     325 ..     258     350 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 3e-07
  TIGR00465   1 lkgkkvaiiGyGsqGeaqalnlrdsglnvivglrkeaaswkkAeedGfkvltveeaikkadlimiLlpD 69 
                l+gkk +i GyG  G++ a  +r +g  v v+   +     +A  +G  v+t+e++ +++d+ ++ + +
  MMETSP1061-20121228|555_1 258 LAGKKAVICGYGDVGKGCAHAMRANGCVVYVTEI-DPICALQACMEGYTVTTLEDVLETGDIFITTTGN 325
                689***********************97777644.4577889999****************98876654 PP

>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.6   1.7e-06    0.0012     136     229 ..     258     347 ..     254     380 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.7e-06
  TIGR01327 136 lygktlGviGlGriGsevak..rakalgmkvlayDPyiseekaeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNca 229
                l gk+  + G G +G+  a+  ra++  ++v   DP  +  +a   g + +++l+++l+  D+       t   kg++ k+++akmK+++i+ N+ 
  MMETSP1061-20121228|555_1 258 LAGKKAVICGYGDVGKGCAHamRANGCVVYVTEIDPICA-LQACMEGYT-VTTLEDVLETGDIFI----TTTGNKGILMKDHMAKMKNNAIVGNIG 347
                7899999********998752277788889999***665.555556777.778*********754....477889****************99975 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   6.8e-06    0.0047     134     222 ..     252     334 ..     243     345 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.8e-06
  TIGR03911 134 ealdllkaglkekdvlviGlGkvGtaaavalvkkGakvyvydkekelleklvkdlpevgieaeesealkkfslifeatPeagliseevl 222
                 a d++ ag   k+ ++ G G vG++ a a+  +G  vyv +++   + ++  +       ++ ++ l+  ++ +  t ++g++ ++++
  MMETSP1061-20121228|555_1 252 RATDVMLAG---KKAVICGYGDVGKGCAHAMRANGCVVYVTEIDPICALQACMEG---YTVTTLEDVLETGDIFITTTGNKGILMKDHM 334
                588999999...778899**********************999877665554443...1222333444555566666666666666665 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00013     0.089     178     263 ..     258     337 ..     250     347 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00013
  TIGR01035 178 LkgkkvlliGaGemaeLvakhLkekgvkkvlilnRtyekaekLakeleeeavklekleealaeadivissTgapepivskedlera 263
                L+gkk+++ G G++++  a++++++g   v ++         L   +  e  ++  le++l++ di i++Tg +  +++  +  ++
  MMETSP1061-20121228|555_1 258 LAGKKAVICGYGDVGKGCAHAMRANG-CVVYVTE--IDPICALQACM--EGYTVTTLEDVLETGDIFITTTGNKGILMKDHM-AKM 337
                899********************999.4555543..44444444444..5566779****************8876666554.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1923.84
//
Query:       MMETSP1061-20121228|565_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1959.53
//
Query:       MMETSP1061-20121228|567_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.16
# Mc/sec: 453.71
//
Query:       MMETSP1061-20121228|566_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 943.72
//
Query:       MMETSP1061-20121228|568_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-91  303.5   0.0    4.7e-91  303.1   0.0    1.1  1  TIGR01464 hemE: uroporphyrinogen decarboxylase
    1.8e-17   61.4   0.0    2.8e-17   60.8   0.0    1.2  1  TIGR01463 mtaA_cmuA: methyltransferase, MtaA/CmuA family


Domain annotation for each model (and alignments):
>> TIGR01464  hemE: uroporphyrinogen decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.1   0.0   2.3e-94   4.7e-91       2     338 .]      99     451 ..      98     451 .. 0.91

  Alignments for each domain:
  == domain 1    score: 303.1 bits;  conditional E-value: 2.3e-94
  TIGR01464   2 llkalkgekvdrvPvWlmRQaGRylpeYrelrekag.dflelckdpdlavevtlqPlrrlgvDAaIlFsDIlvilealglelefeegkgpvleepireaedvkk.......lkevdvekeleyvleaikllreelee...evpliGFaGaPfTlasYlieGggskdlakakkflyeepealkaLlekltdatieYlseQvkaGadavqiFdswagaLseedfeefvlpylkkiieelkkre.kvPvilfakgagelleelaetgadvvglDwsvdlkeaaklvkkkvalQGnldPavllaske......aleekvekilealkegksryifNlGHGilpetppenvkalvelvhe 338
                +++a+ ge+v+++P+Wl RQaGR lpeY +++e++g +f+el+k p+ ++e tlqP+rr++vDAaIlFsDIlvi ealg+e+++  g+g+ +++p+  +e+v++       ++e  ve++l  vlea++++r+++ee   +vpliGF++aP+Tl+ Y++ G + k++    k+l+e+pe++++Ll+ lt+ +ieY+s+Qv+ Ga+++q+F++ +  ++ee+f++f+lp l++i +elk+r+ +vP+++f++ga+ +  +l++  +dvv +D svd ++a+++v+++valQGn dP  l++++e      +++++++++le+l+   ++ i+NlG G+  +  ++ v+ +v+ +he
  MMETSP1061-20121228|568_1  99 MIRAALGETVEKTPIWLFRQAGRHLPEYTAYKEETGrNFVELLKYPESVAECTLQPIRRYDVDAAILFSDILVIAEALGIEVTMPGGVGILIPKPLAGPEEVATripsiddISEAFVEDKLGHVLEAVRQIRAKMEEegkSVPLIGFSAAPWTLLFYMVGGSSRKNTDIGMKWLNEHPEESQKLLDILTKIVIEYMSKQVENGAHMLQVFEAMGMMINEENFDKFALPCLEQISKELKSRYpDVPLMVFSRGASFANGNLSKLEYDVVTIDGSVDRSTARDNVGDRVALQGNYDPRELIEDEEgtktpgTVRATARDMLESLG--PQKLIANLGEGLGGKESTTLVESFVNSIHE 451
                6899****************************987548********************************************************99888877542111111666778999**************99744469**************************************************************************************************55*********************************************************999833222235566677777666..67************************9996 PP

>> TIGR01463  mtaA_cmuA: methyltransferase, MtaA/CmuA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   1.4e-20   2.8e-17      12     307 ..     102     418 ..      95     424 .. 0.78

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 1.4e-20
  TIGR01463  12 Avekqrvdkvppcvvtqta.....tvelmeecgaawpeAhsdaeamAklaiaayevvGleavrlpfdltveaEvlgCeldagkkkrPsvvksPapknladlevkenll.....lkegripvvleaikilreky...gdelpiigslegPitlAsqligveef......lkylstdpdlakavlelaadiviayaklmveaGadviailDPvaSsdllspetykefvlpyqkklvaeike..idsvtvlHiCgktskilsdiaksGveglsvdekvgvaeakkvigdeislvGnldpvsvllnG....taekvkklakevle 307
                A  +++v+k p   + q +      +   ee+g  + e ++ +e  A+   ++ +   ++a++l  d+ v aE+lg e+ +       ++ +P    ++ ++           + e +   vlea++++r+k+   g+++p+ig   +P tl   ++g+++       +k+l + p+  +++l++ + ivi y   +ve+Ga+++++ +  a + ++  e + +f+lp   ++++e+k    d+++++   g  s   +++ k   + + +d  v+  +a+  +gd++ l Gn dp +++ +     t+  v+++a+++le
  MMETSP1061-20121228|568_1 102 AALGETVEKTPIWLFRQAGrhlpeYTAYKEETGRNFVELLKYPESVAECTLQPIRRYDVDAAILFSDILVIAEALGIEVTMPGGV-GILIPKPLAGPEEVATRIPSIDdiseaFVEDKLGHVLEAVRQIRAKMeeeGKSVPLIGFSAAPWTLLFYMVGGSSRkntdigMKWLNEHPEESQKLLDILTKIVIEYMSKQVENGAHMLQVFE--AMGMMINEENFDKFALPCLEQISKELKSryPDVPLMVFSRGA-SFANGNLSKLEYDVVTIDGSVDRSTARDNVGDRVALQGNYDPRELIEDEegtkTPGTVRATARDMLE 418
                5555666666665555543221223555567777888888899*********************************999985543.444444665555554433333223366899999***********998222567*************9999988763333445***************************************97..66789*********************9633355555555443.34456777777999****************************9999754447788888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1738.49
//
Query:       MMETSP1061-20121228|570_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 1061.19
//
Query:       MMETSP1061-20121228|569_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-187  621.2   0.0   1.3e-187  621.0   0.0    1.0  1  TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit
    1.5e-11   41.4   0.0    4.5e-11   39.8   0.0    1.8  1  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit


Domain annotation for each model (and alignments):
>> TIGR01959  nuoF_fam: NADH oxidoreductase (quinone), F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  621.0   0.0  6.5e-191  1.3e-187       2     410 .]      55     464 ..      54     464 .. 0.99

  Alignments for each domain:
  == domain 1    score: 621.0 bits;  conditional E-value: 6.5e-191
  TIGR01959   2 llkkleekesvtleeyekkggykalkkaleelspddiieevkesglrGrGGaGfptGlkWsfipkde.akpkylvvnadesePgtfkdrdlleaePhklieGliiaayalkakkgyiyirGefvkeakaleaaideayaagllGknilgsgfdlelvvheGaGayiCGeetallesleGkkgqPrlkPPfPavvGlygkPtvvnnvetlasvPailrkGaewykklgkeksaGtklfslsGkvkkpglyelplgitlkelledyagGvrdgkk.lkaviPGGssvpvltaeevldvemdydslakagsrlGtaavivldesvdivklvarlsefykkesCGqCtPCreGtgWlvkilerleegegkkedidkleslskelegktiCalgdaavepvqsaikkfrdefeaki 410
                ++++l+ ++++ l+ + k+g+y+ +k+++++  pd+i++e+k+sglrGrGGaGfp+GlkWsf+pk++  +p +lvvnadesePgt+kdr++++++Phkl+eG+++a+ya++a+++yiyirGe+++ea  l++ai+eay+agl+Gkn  gsg+d+++++h+GaGayiCGeetal+esleG++g+PrlkPPfPa vG++g+P +v nvet+a+ P+ilr+Ga+w++++g+e++ Gtklf++sG+vk+p+++e++++i+l+el+e+++gG+r+g++ l+a iPGGss+p +++e + ++ m++d l+++g+ lGtaa+ ++d+svd+v +++rl++fyk+esCGqCtPCreGt+Wl ++l r+e+g++ k++i +le++++++eg+tiCalgdaa++p+q+++++f++++e++i
  MMETSP1061-20121228|569_1  55 IFTNLYGEQDWRLKDALKRGDYHMTKEIMQM-GPDWIVQEIKDSGLRGRGGAGFPSGLKWSFMPKETdGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARAAYIYIRGEYFNEAVVLDEAIHEAYSAGLIGKNASGSGYDFDIFLHRGAGAYICGEETALIESLEGRQGKPRLKPPFPAGVGVFGCPSTVTNVETIAVSPTILRRGASWFASFGNENNRGTKLFGISGHVKNPTVVEESMSIPLQELIEKHCGGMRNGWDsLQACIPGGSSTPAMNKELCDQALMEFDHLKSLGTSLGTAAITMFDDSVDMVAAIRRLAHFYKHESCGQCTPCREGTSWLEDVLIRMEKGDADKREIPMLEEIARQIEGQTICALGDAAAWPIQGLLRHFKEDIEQRI 464
                78999*********************99965.**********************************989***********************************************************************************************************************************************************************************************************99*************************************************************************************************************************************9987 PP

>> TIGR01945  rnfC: electron transport complex, RnfABCDGE type, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   2.2e-14   4.5e-11     111     207 ..      77     176 ..      68     264 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 2.2e-14
  TIGR01945 111 ealkkeeklskeeilekikaaGivGlGGAtFPthvklnskpek...kvelliingaeCePyltaDdrlmreraeeileGikillkilkvkkvvigiednk 207
                + +k+  ++ ++ i+++ik+ G+ G GGA FP+  k +  p++   + + l++n+ e eP    D  +mr+ +++++eG  +  ++++ + ++i i  + 
  MMETSP1061-20121228|569_1  77 HMTKEIMQMGPDWIVQEIKDSGLRGRGGAGFPSGLKWSFMPKEtdgRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARAAYIYIRGEY 176
                5667778999999***********************99766652225789***************************************99999987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 2019.83
//
Query:       MMETSP1061-20121228|571_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.10s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1950.03
//
Query:       MMETSP1061-20121228|573_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1045.35
//
Query:       MMETSP1061-20121228|572_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    6.3  15.4       0.29    9.5   2.8    3.0  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   2.5     0.024        97       7      25 ..      22      41 ..      22      45 .. 0.79
   2 ?    9.5   2.8   7.1e-05      0.29       2      19 ..      55      72 ..      54      83 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.024
  TIGR01409  7 Lkaaaaagaaaglgl.llps 25
               +k++a++ aa+ +++ ++ +
  MMETSP1061-20121228|572_1 22 MKFVAVVSAALLASAsAFAP 41
               79999*99999998875555 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 7.1e-05
  TIGR01409  2 sRRdFLkaaaaagaaagl 19
               +RR+ + + aaa++aa+ 
  MMETSP1061-20121228|572_1 55 DRRSAMAGIAAAAGAAAM 72
               699999999888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 997.25
//
Query:       MMETSP1061-20121228|575_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-08   30.3   1.0    4.7e-07   26.8   0.2    2.0  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    4.7e-08   30.4   0.6    7.4e-08   29.8   0.4    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    9.4e-07   26.0   0.8    2.1e-06   24.9   0.4    1.6  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    0.00032   18.2   0.0    0.00063   17.2   0.0    1.5  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.016        16     256     287 ..      92     120 ..      89     141 .. 0.77
   2 !   26.8   0.2   4.6e-10   4.7e-07     234     349 ..     169     278 ..     154     308 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.016
  TIGR01648 256 efkpGavervkkirdyafvhfedredavkamd 287
                 f+p  ver+ + r y fv ++d    v a d
  MMETSP1061-20121228|575_1  92 AFNPIPVERLDQKRGYCFVFLKDA---VAAAD 120
                689999*************99764...44444 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 4.6e-10
  TIGR01648 234 kilyvrnlmlette.eiieksfsefkpGavervkkirdyafvhfedredavkamdelnGkeleGseievtlakPvdkesyvrytkaakgrgkeaqaaaqslsqvydpasrslayedy 349
                  l+v n+  ett  e ++  f+ f  G + r+   r+yafv f + ++a +a d+ nG  le s + v       ++   r +++ + + +e +++++    v d+a+  +a +  
  MMETSP1061-20121228|575_1 169 DTLFVVNFQEETTKrEDLKMLFEPF--GELVRIDMKRNYAFVQFGSIDEATRAKDATNGGRLEQSVLTVEYV---ARQ-RNRNDEGGGDEEEEDETEET-TVGVVDTATIVIATTAE 278
                579****9998875389********..**************************************9998643...233.23344444444444444444.44456666666665554 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.4   7.3e-11   7.4e-08     144     262 ..     134     245 ..      97     264 .. 0.68

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 7.3e-11
  TIGR01628 144 eAieklNgvllndkevyvgkfikksereatkekkftNlYvKnlddsvte.dklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkra 262
                 A+e++ ++l ++++   g+ ++k++ + ++ k    l+v n++++ t+ + l+ lF +fGe++    + d k++   +afv++ + ++A++A ++ ng +++  +  ++ yV+r+++r+
  MMETSP1061-20121228|575_1 134 MAVENVSSALRAECARGDGRIKRKEDDRRKNIKPSDTLFVVNFQEETTKrEDLKMLFEPFGELV----RIDMKRN---YAFVQFGSIDEATRAKDATNGGRLE-QSVLTVEYVARQRNRN 245
                3667777777777777777777777776777777888888888877664267888888888864....3444444...7888888888888888888888888.3344555666666665 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.3   3.1e+02     213     241 ..      52      80 ..      32     124 .. 0.62
   2 !   24.9   0.4     2e-09   2.1e-06     210     354 ..     159     292 ..     116     313 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.3
  TIGR01622 213 ipnsiadlkLYvGnlhfnitEqeLrqiFe 241
                  +s+a + +++Gnl+ n   +++  iF 
  MMETSP1061-20121228|575_1  52 DVGSAAMRPIFLGNLKPNYQAEDVMAIFH 80 
                45688888888888888888888777774 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 2e-09
  TIGR01622 210 sgdipnsiadlkLYvGnlhfnitE.qeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnteereqldekldrddekgsgalaiagtd 354
                +   +n  +   L+v n+  + t  ++L+ +FepFGe+  +++++         y F+qF   +ea +A  + NG  l    + v ++    +++d    ++ e+  de+e++++++  +++  +    ++d  ++++a +i++++
  MMETSP1061-20121228|575_1 159 DDRRKNIKPSDTLFVVNFQEETTKrEDLKMLFEPFGELVRIDMKR--------NYAFVQFGSIDEATRAKDATNGGRLEQSVLTVEYVARQRNRNDEGGGDEEEE--DETEETTVGVVDTATIVIA-TTAED-AETTSAWEIEEAA 292
                224566678999******988886268**********99998865........599*******************999999999999999888888755555554..5777777776666555443.34444.4555577777665 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.2e-07   0.00063     270     347 ..     169     240 ..      92     244 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.2e-07
  TIGR01661 270 ycifvynlspdtd..eavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktn 347
                  +fv n+  +t   e +  lf pfG ++ + +         + y+fv     dea+ a  + nG +l + vl v +++ 
  MMETSP1061-20121228|575_1 169 DTLFVVNFQEETTkrEDLKMLFEPFGELVRIDMK--------RNYAFVQFGSIDEATRAKDATNGGRLEQSVLTVEYVAR 240
                369*****999863256779******99776443........458****************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1966.18
//
Query:       MMETSP1061-20121228|576_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1165.15
//
Query:       MMETSP1061-20121228|574_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.7e-155  513.5   0.5   9.5e-155  513.2   0.3    1.0  1  TIGR01060 eno: phosphopyruvate hydratase
    2.1e-08   31.4   0.1    3.5e-08   30.7   0.1    1.2  1  TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase
    1.7e-07   28.5   0.0    2.7e-07   27.8   0.0    1.3  1  TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases


Domain annotation for each model (and alignments):
>> TIGR01060  eno: phosphopyruvate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  513.2   0.3  6.9e-158  9.5e-155       1     419 [.      27     450 ..      27     455 .. 0.96

  Alignments for each domain:
  == domain 1    score: 513.2 bits;  conditional E-value: 6.9e-158
  TIGR01060   1 ikdvearevldsrGnPtveveviledgtvgraivPsGastGekealelrdkdkkrylgkGvlkavenvneviapeliGldaldqaeidqilieldgtenksklGanailavslavakaaakalelplyrylggvn....alvlPvPllniinGGahadnkldlqefmivPvgaeslkealrlgaevfhalkkllkekg..latavGdeGGfaPnlksneealeilveaiekagykpgedvalaldvaasefydeekkkyvlkgeek......sltseelieyleelvekypivsiedglseedwegfaeltkelGdkvqlvGddlfvtnaellkkGiekgvanailiklnqiGtltetleavklakkagytavishrsGetedttiadlavalnagqiktGslsrseriakynqLlrieeelgeeakyagk 419
                i+ v are++dsrGnPtvev++++++gt+  a vPsGastG  ea elrd+   rylgkG lkaven ++v+a++++G+da dq++id ++++ dgt+nk+++Ganail++sla +ka a ++++pl+++ ++v       ++PvP  n+inGG+ha nkl +qef+++P gae+++e++++g+e+fhalkk++k k    at +GdeGGfaP  +  e  l +l+ea e agy   + +++ ldva+sef  ++k+ y l+ ++       +l+ +e+++++++l+++ypiv ied+++++dwe ++++t     ++q+vGddl vtn+e++++ iek+ +n++l+k+nqiG+++e+++avk++k+ag+ ++ shrsGeted+ iadlav+l++gqiktG+  r+er akynqLlrie elg++a + g+
  MMETSP1061-20121228|574_1  27 ITGVDAREIIDSRGNPTVEVDITTATGTY-TASVPSGASTGAYEAHELRDGG-ARYLGKGCLKAVENAKTVLADAVMGIDAADQRAIDDAMLKADGTHNKANVGANAILGISLAASKAGAGVQGIPLWKHYAQVAgnpiPETMPVPCFNVINGGEHAGNKLAFQEFFVIPTGAETFSESMEIGCETFHALKKVIKGKFggDATLIGDEGGFAPPCD-VESGLAMLMEAAEIAGY--ADKISVGLDVASSEFKVDGKDAYDLDFKSAngdpsmVLSGDEMVALYQKLIAEYPIVTIEDPFDQDDWENWSKITAAT--DIQIVGDDLTVTNPEKIEEAIEKKSCNCLLLKVNQIGSISESIDAVKMSKQAGWGVMTSHRSGETEDNYIADLAVGLGTGQIKTGAPCRGERTAKYNQLLRIEAELGDKAIFPGA 450
                67899**********************77.699******************9.9**************************************************************************98877764455789*****************************************************995459**************9.8999*************..789*********************999987789988899************************************986..9**************************************************************************************************************9986 PP

>> TIGR01928  menC_lowGC/arch: o-succinylbenzoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   2.6e-11   3.5e-08     194     279 ..     306     392 ..     297     395 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 2.6e-11
  TIGR01928 194 keLdrydllyiEePfkadDlselkelkkelltpiclDE.sitslddlrklielgavkviniKpgRlGGltealkviellkehgakvw 279
                k +++y ++ iE+Pf+ dD  + ++++  +   i  D+  +t+ +++ ++ie ++++ + +K+  +G + e+  ++ + k+ g +v+
  MMETSP1061-20121228|574_1 306 KLIAEYPIVTIEDPFDQDDWENWSKITAATDIQIVGDDlTVTNPEKIEEAIEKKSCNCLLLKVNQIGSISESIDAVKMSKQAGWGVM 392
                6789*************************998888766489****************************************998875 PP

>> TIGR02534  mucon_cyclo: muconate and chloromuconate cycloisomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0     2e-10   2.7e-07     205     290 ..     303     389 ..     296     418 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2e-10
  TIGR02534 205 kalkqladagvelieqPtaaedlealarltarlevpimade.avtgPedalelakksaadvialkiaksGGlleakevaaiakaagi 290
                 + k +a+  +  ie P  ++d e   ++ta +++ i+ d+ +vt Pe+  e ++k++ + + lk+++ G ++e+ + ++++k ag 
  MMETSP1061-20121228|574_1 303 LYQKLIAEYPIVTIEDPFDQDDWENWSKITAATDIQIVGDDlTVTNPEKIEEAIEKKSCNCLLLKVNQIGSISESIDAVKMSKQAGW 389
                566778999999**************************98747999************************************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1730.94
//
Query:       MMETSP1061-20121228|578_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.56
# Mc/sec: 1414.17
//
Query:       MMETSP1061-20121228|577_1  [L=1271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29    8.1   5.6       0.28    8.2   2.7    1.7  2  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein


Domain annotation for each model (and alignments):
>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.12   5.1e+02     241     266 ..     604     629 ..     601     633 .. 0.83
   2 ?    8.2   2.7   6.7e-05      0.28     164     257 ..    1081    1174 ..    1067    1183 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.12
  TIGR00996 241 alsaqvrdllaenrpnLaqalanLas 266
                +++  ++d++++n+++L+++l++ a+
  MMETSP1061-20121228|577_1 604 PVVYRAQDFVTRNTDTLPTDLQEAAK 629
                5667799**************98775 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 6.7e-05
  TIGR00996  164 GqgpqlrelleglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnL 257 
                 +q +q ++l++++ ++++ l++   ++++  +  +r  ++l +++ +l++++d++++ + ql+d+ + L+++ a+l + ++  ++ l + +++L
  MMETSP1061-20121228|577_1 1081 QQSAQHQTLIDESGKIIEYLRKENAKLRQQSETMKRDYKALKENNARLKEANDSASKSFNQLNDHAKGLNATNARLIRSVDAFKKQLVKMKEDL 1174
                 4555666777777777777777777777777777777777777777777777777777777777777777777777777777666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       641  (0.156265); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.17u 0.25s 00:00:01.42 Elapsed: 00:00:01.26
# Mc/sec: 1331.41
//
Query:       MMETSP1061-20121228|583_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|581_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 1856.85
//
Query:       MMETSP1061-20121228|582_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.2    2.7   8.7         11    2.1   6.0    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   6.0    0.0027        11     307     416 ..     216     339 ..     207     358 .. 0.47

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0027
  TIGR02442 307 khRrrrkpfeee.........qekeekkleekkeeak....pdeekedeseekekeeskkqe....eeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrs 416
                + R+ ++p +++         +   ++++++++ +a+    ++e+  d+++++ +++++k++       pg+d + +e +k++ +++++s+++ ++++ + + ++ ++a+s+++++ ++ r+ +++ 
  MMETSP1061-20121228|582_1 216 SKRKSQNPYDSDinsvsnqscD---SDNNSSASDNASnadsDEESDSDNESNQGNNNRNKRSynnpCRIPGHDHDWSECPKNRYSKRNKSNSSNNSTASAPSNETGSTAPSNESFQAHMRRAMESYC 339
                5677777777776666653331...222222222222111111111112111111111111122233445555555555555555555544555555555566666666666666666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.19s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1755.46
//
Query:       MMETSP1061-20121228|584_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1515.01
//
Query:       MMETSP1061-20121228|588_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 454.63
//
Query:       MMETSP1061-20121228|580_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 2170.49
//
Query:       MMETSP1061-20121228|587_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1620.53
//
Query:       MMETSP1061-20121228|586_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-11   41.6  15.7      0.021   12.9   0.0    9.2 10  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.2     0.025     1e+02      17      28 ..     140     151 ..     121     152 .. 0.84
   2 !    4.0   0.0    0.0033        14       2      19 ..     168     185 ..     167     187 .. 0.87
   3 !    6.5   0.0   0.00052       2.2      12      28 ..     226     242 ..     225     243 .. 0.88
   4 ?    1.0   0.0      0.03   1.2e+02       2      13 ..     257     268 ..     256     274 .. 0.86
   5 ?   -3.6   0.1      0.85   3.5e+03       3       9 ..     302     308 ..     301     310 .. 0.84
   6 !   12.9   0.0     5e-06     0.021       1      21 [.     350     370 ..     350     378 .. 0.93
   7 !    9.9   0.0   4.3e-05      0.17       2      21 ..     394     413 ..     393     419 .. 0.91
   8 !    7.4   0.0   0.00028       1.1       2      20 ..     438     457 ..     437     467 .. 0.90
   9 ?   -2.5   0.1      0.37   1.5e+03       2      11 ..     485     494 ..     484     494 .. 0.83
  10 ?   -2.0   0.0      0.26   1.1e+03       1      12 [.     527     538 ..     527     539 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.025
  TIGR00756  17 eeAlelfdeMke 28 
                ++A+ l+d+M+e
  MMETSP1061-20121228|586_1 140 DKAMTLLDRMEE 151
                789999999987 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0033
  TIGR00756   2 tyntlisglckagrveeA 19 
                +y+ +i++l+++++ + A
  MMETSP1061-20121228|586_1 168 SYTKVINALSRSKQRDSA 185
                8***********997766 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.00052
  TIGR00756  12 kagrveeAlelfdeMke 28 
                 +g++e+A+el+++M+ 
  MMETSP1061-20121228|586_1 226 MEGSPEKAEELLERMIQ 242
                589************85 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.03
  TIGR00756   2 tyntlisglcka 13 
                ++n+ is+++k+
  MMETSP1061-20121228|586_1 257 CFNAAISSYGKS 268
                89********96 PP

  == domain 5    score: -3.6 bits;  conditional E-value: 0.85
  TIGR00756   3 yntlisg 9  
                yn+li +
  MMETSP1061-20121228|586_1 302 YNSLITA 308
                9***986 PP

  == domain 6    score: 12.9 bits;  conditional E-value: 5e-06
  TIGR00756   1 vtyntlisglckagrveeAle 21 
                v+yn++i++++k+++ e A++
  MMETSP1061-20121228|586_1 350 VSYNAVIDAYAKSKQEEAAER 370
                79*************999986 PP

  == domain 7    score: 9.9 bits;  conditional E-value: 4.3e-05
  TIGR00756   2 tyntlisglckagrveeAle 21 
                ++nt+i++ +k+gr + A++
  MMETSP1061-20121228|586_1 394 SFNTVINAWAKSGREDAAEK 413
                8****************997 PP

  == domain 8    score: 7.4 bits;  conditional E-value: 0.00028
  TIGR00756   2 tyntlisglckagrv.eeAl 20 
                +++t+i+++++++++ ++A+
  MMETSP1061-20121228|586_1 438 SFTTVINAFARSNQLkDKAE 457
                89************988776 PP

  == domain 9    score: -2.5 bits;  conditional E-value: 0.37
  TIGR00756   2 tyntlisglc 11 
                + n+++++++
  MMETSP1061-20121228|586_1 485 AVNAVMNACA 494
                569*****96 PP

  == domain 10    score: -2.0 bits;  conditional E-value: 0.26
  TIGR00756   1 vtyntlisglck 12 
                +ty t+++ +++
  MMETSP1061-20121228|586_1 527 ITYGTFLKVCAN 538
                69*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1647.22
//
Query:       MMETSP1061-20121228|591_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 388.63
//
Query:       MMETSP1061-20121228|592_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 2613.38
//
Query:       MMETSP1061-20121228|599_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 402.91
//
Query:       MMETSP1061-20121228|598_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 533.70
//
Query:       MMETSP1061-20121228|600_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|597_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.44    8.1  11.4      0.028   12.1   2.9    2.2  2  TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family


Domain annotation for each model (and alignments):
>> TIGR01102  yscR: type III secretion apparatus protein, YscR/HrcR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   2.9   6.7e-06     0.028      71     142 ..      29     100 ..      15     108 .. 0.65
   2 ?   -0.3   0.5      0.04   1.6e+02      67     129 ..     254     316 ..     207     318 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.7e-06
  TIGR01102  71 eeevelsdidklkklldealepyreflkknteeeevaffeesakklwpkekkde.lkkddlliliPaftlsel 142
                +++++++ +++ +++ +  ++p++++l+++ +++ +++++++++++++++++++  +      l+P f l   
  MMETSP1061-20121228|597_1  29 TTTTTTTRMSNNNEFHKGSSHPFQKHLQQQQQQQ-QQHLQQQQQQQQQQQQQQQqQQFTWKRNLLPEFQLCSA 100
                4455677888888999999********9987665.56666666655555444440333334456777777655 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.04
  TIGR01102  67 erleeeevelsdidklkklldealepyreflkknteeeevaffeesakklwpkekkdelkkdd 129
                ++l++++v  +++  ++k+ ++    + +f +k+ +++  +   +++   w k+++++lk+++
  MMETSP1061-20121228|597_1 254 KELTDHSVVEENTRIIEKTWEQNYLRLLQFYQKHGHSNVLRSDPDKQLSGWVKRQRNNLKDQK 316
                223333333334444444444444444555555555555555555556667777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       842  (0.205266); expected 82.0 (0.02)
Passed bias filter:                      206  (0.0502194); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1805.04
//
Query:       MMETSP1061-20121228|606_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   15.7  49.2     0.0017   15.5  34.1    1.1  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5  34.1   4.1e-07    0.0017     133     241 ..       8      95 ..       1      96 [] 0.31

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.1e-07
  TIGR02794 133 akqaaEakakaeaeaKaekkakeeAakkaEeeak...akaaaeakkkaEae.....eakkkaeaeakKakaeaeaKakae....eakaKaeaeAkaKAeaeAkaKaeaeakakakaeaerk 241
                  ++aEa +kae+e +  + ++eeAa+kaEee+    a+a+aeak+kaE+e     ea++kae+e+ + +aea++Ka++e    e                                aerk
  MMETSP1061-20121228|606_1   8 LEAEAEANRKAEEEERV-RLEAEEAAAKAEEERLrlvAEAEAEAKRKAEEErlrllEAEQKAEEERLRLEAEAKRKAEEErlrlE--------------------------------AERK 95 
                22233332222222211.2222334444444442222333344444444323333444444444433444444444433322222................................3332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       398  (0.0970258); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 603.38
//
Query:       MMETSP1061-20121228|604_1  [L=1074]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1074 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.23s 00:00:00.62 Elapsed: 00:00:00.47
# Mc/sec: 3016.09
//
Query:       MMETSP1061-20121228|608_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.21s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2072.23
//
Query:       MMETSP1061-20121228|614_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 389.68
//
Query:       MMETSP1061-20121228|617_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 189.94
//
Query:       MMETSP1061-20121228|616_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 857.93
//
Query:       MMETSP1061-20121228|620_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.065   10.3 189.8      0.019   12.1 108.5    2.9  2  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3  44.0       0.2   8.4e+02     136     204 ..       6      79 ..       3      81 .. 0.42
   2 ?   12.1 108.5   4.5e-06     0.019      92     287 ..      44     233 ..      43     269 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.2
  TIGR02794 136 aaEakakaeaeaKaekkakee...AakkaEeeakakaaaeakkkaEa..e....eakkkaeaeakKakaeaeaKakae 204
                a+Ea+aka+ae   e+ + e+   Aa kaEeea akaaaea++k+ +  e    ea+ k++ae   a+aea++Ka++e
  MMETSP1061-20121228|620_1   6 AEEAAAKAKAEE--ERLRIEAelaAATKAEEEASAKAAAEAEAKRKEqeEkhriEAEEKRKAEE--AAAEAKRKAEEE 79 
                344444444443..22222223446677777776666644444442111233344444444443..455555555444 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.5e-06
  TIGR02794  92 aeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaa..aeakkkaEaeeakkkaeaeak.KakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeaeakakakaeaerka......a.kqeaeladlaGlaeeknaekqgsgaagkavasevdkyagaikqa 287
                ae++r+++ ek r +ae++ k aeeaa   e+k+k++ee++ ++  E +a+aeae    kk++eeA+kkaEeea+akaa  a+a+kkaE+++ak+kaeaeak Ka++ea+aKaka      aeaeAk++AeaeA+aKa+a a+    aea+r++      + k+e+++a++a+ ae+++ +   +  + + +a++ +++ +++ q+
  MMETSP1061-20121228|620_1  44 AEAKRKEQEEKHRIEAEEKRK-AEEAAA--EAKRKAEEEEALQALFEVQAAAEAEV---KKKEEEAKKKAEEEAAAKAAaeAKAQKKAEEAAAKAKAEAEAKrKAEEEAAAKAKAV-----AEAEAKKRAEAEAAAKARAIAA----AEAKRRQeleaaaKkKAEEAAAAMAA-AEGNESNDETERPRMAMLAARAKNWRNRLSQE 233
                899999999999999999666.666666..4689********************75...566677**************555556666644899****************999777.....6666777777777777775333....22333221111212122222222222.22222111112222233333445666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       910  (0.221843); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        79  (0.0192589); expected 4.1 (0.001)
Passed Fwd filter:                        46  (0.011214); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.28u 0.24s 00:00:01.52 Elapsed: 00:00:00.90
# Mc/sec: 457.56
//
Query:       MMETSP1061-20121228|621_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 381.30
//
Query:       MMETSP1061-20121228|624_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 425.96
//
Query:       MMETSP1061-20121228|628_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 408.54
//
Query:       MMETSP1061-20121228|622_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-159  528.4   7.9   3.9e-159  528.1   5.5    1.0  1  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    7.4e-57  191.0   6.6    3.8e-23   80.0   0.0    3.3  3  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    2.8e-08   30.3   0.8    1.2e-05   21.5   0.0    3.1  3  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    3.1e-07   27.7   0.0    3.3e-05   21.0   0.0    2.4  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
      6e-07   26.4   0.0      2e-05   21.4   0.0    2.4  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.9e-05   21.6   0.7    0.00027   17.7   0.0    2.8  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00018   17.8   3.3     0.0014   14.9   0.0    2.9  4  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    0.00049   17.5   0.0     0.0011   16.3   0.0    1.7  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    0.00084   15.8   0.1     0.0019   14.7   0.0    1.5  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
     0.0014   15.6   0.4        1.1    6.1   0.0    3.1  3  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0014   15.5   0.2       0.11    9.3   0.0    2.7  3  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      0.002   16.0   0.0      0.002   16.0   0.0    3.2  4  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0045   14.2   0.0     0.0089   13.2   0.0    1.4  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.1   5.5  1.2e-161  3.9e-159       2     441 .]     108     543 .]     107     543 .] 0.96

  Alignments for each domain:
  == domain 1    score: 528.1 bits;  conditional E-value: 1.2e-161
  TIGR00390   2 tPreivaeldkyiiGqdeakkavaialrnryrrlqleeelkdevvPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaavklvkeekiekvkekaeeaaeerivdkllppaknqfgeeeekdeeesakealrkklreGelddkeieievsekspseieila.ppeleevdenlqsllqnllsdkkkkrklkvkeakkvlieeeaeklvdseeikqeavdrveesGiifideidkiakkg...essgadvsreGvqrdllPiveGstvstkyGsvktdhilfiaaGafqlakPsdliPelqGrlPirvelkaltvddleriltetkaslikqykallkvegvelefsdeaikkiaelaynvnekteniGarrlhtvlerlledlsfeaedl.slqkvtidadyvekkleelvkdedlskfil 441
                 P eiva ld++i+Gq eakk+vaia+rnr+rr ql+e+l++ev+P+n+l++G+tG Gkte+arr+a + +aPf+kveatkftevGy Grdv+ ++rdl+d a++l k++++e +ke+ae  aeeri+d l  p++++         +++ +e +r+ lr+G ldd+eiei+v ++++ + ei +  p++  ++  +q l ++     + ++kl + ea+ +++e e+e+l+++ ++k++a+++veesG++fideidki+         +ad s eGvqrdllP++eG+t++tk+G vktd+ilfia+Gaf+  k sdl+PelqGrlPirvel+ lt+ddl++ilte+ a l++q + l+ +egvel f++ea+++ia++a  +n+  eniGarrlhtvler++e +s++a ++ ++ +vt++++ ve+++++++k+ d+s++il
  MMETSP1061-20121228|622_1 108 KPSEIVAALDRHIVGQPEAKKSVAIAMRNRWRRRQLPEDLRKEVTPRNVLLVGPTGCGKTEVARRMAMINDAPFLKVEATKFTEVGYHGRDVDQIIRDLMDVAMQLAKKQQTELLKEQAESLAEERILDILAGPSSEN---------ATRGRESFRDMLRQGLLDDQEIEIDVPSQKQNQTEIDQsNPQIVAMSDLMQRLASGGKKPPTERKKLPISEARGIILEVELERLLENVDLKKSAIQAVEESGVVFIDEIDKICSPKegiSGRSADASAEGVQRDLLPLIEGTTINTKHGNVKTDYILFIASGAFHAVKVSDLLPELQGRLPIRVELSGLTEDDLYKILTEPVANLVRQQVELIGAEGVELVFENEALREIARMAAMLNKTVENIGARRLHTVLERIMESISYDAAEMdTGSTVTVTKQTVEERMQSVTKKMDVSRYIL 543
                799*********************************************************************************************************************************999888.........6778999*******************99998888886526899**********999999999***************************************************75522445679********************************************************************************************************************************************99835799*************************8 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.0   0.0   1.2e-25   3.8e-23      60     180 ..     100     216 ..      78     226 .. 0.86
   2 !   38.9   0.2   3.6e-13   1.1e-10     167     259 ..     326     412 ..     267     415 .. 0.81
   3 !   74.3   0.4   6.4e-24     2e-21     302     410 ..     417     530 ..     411     533 .. 0.92

  Alignments for each domain:
  == domain 1    score: 80.0 bits;  conditional E-value: 1.2e-25
  TIGR00382  60 eleleelpkpkelkevldeyviGqeqakkvlsvavynhykrlrleknkksddgveleksnilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvek 180
                 +el++  kp e+ + ld +++Gq +akk++++a+ n ++r +l   ++   + e+   n+ll+GptG Gkt +a+ +a + d pf   +at +te Gy G dv+ i+  l+++a    +k
  MMETSP1061-20121228|622_1 100 GSELNKNLKPSEIVAALDRHIVGQPEAKKSVAIAMRNRWRRRQL--PEDL--RKEVTPRNVLLVGPTGCGKTEVARRMAMINDAPFLKVEATKFTEVGYHGRDVDQIIRDLMDVAMQLAKK 216
                456667779********************************996..2334..44899******************************************************9988655554 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 3.6e-13
  TIGR00382 167 llkllqaadydveka....ekGiiyideidkiarksenas.itrdvsGeGvqqallklieGtvanvppkGGrkhpeqeliqidtsnilficgGafaGl 259
                l +ll++ d++ +      e G+++ideidki+   e+ s  + d s eGvq+ ll lieGt +n       kh      +++t  ilfi +Gaf  +
  MMETSP1061-20121228|622_1 326 LERLLENVDLKKSAIqaveESGVVFIDEIDKICSPKEGISgRSADASAEGVQRDLLPLIEGTTINT------KHG-----NVKTDYILFIASGAFHAV 412
                677888777764432111257***********999999883578******************9984......665.....4789999******99865 PP

  == domain 3    score: 74.3 bits;  conditional E-value: 6.4e-24
  TIGR00382 302 lipefiGrlpvlatlekldeealvailtkpknalvkqyqkllkldevelefeeealkaiakka.lerkt....Garglrsiveellldvmfelpsledlekvvitkevvlkqee 410
                l+pe+ Grlp+   l+ l e++l +ilt+p   lv+q  +l++ + vel+fe+eal++ia+ a +  kt    Gar l +++e ++  + ++  +++  + v +tk++v+++ +
  MMETSP1061-20121228|622_1 417 LLPELQGRLPIRVELSGLTEDDLYKILTEPVANLVRQQVELIGAEGVELVFENEALREIARMAaMLNKTveniGARRLHTVLERIMESISYDAAEMDTGSTVTVTKQTVEERMQ 530
                89**********************************************************9762555544555************************************99865 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.9e-08   1.2e-05     444     525 ..     103     191 ..      85     203 .. 0.74
   2 ?   -0.1   0.0      0.14        44     275     303 ..     342     372 ..     335     374 .. 0.70
   3 !    4.8   0.0    0.0046       1.4     635     713 ..     417     503 ..     375     521 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.9e-08
  TIGR02639 444 dkekLk..nlekeLkkkifGqdeaiealvkaikrs..r....aGlkeenkPvgsflfvGptGvGktelakqLaeelgvellrfDmseyme 525
                 +++Lk  ++   L ++i Gq ea ++++ a+++   r      l++e +P    l vGptG Gkte+a+++a +    +l+ + + ++e
  MMETSP1061-20121228|622_1 103 LNKNLKpsEIVAALDRHIVGQPEAKKSVAIAMRNRwrRrqlpEDLRKEVTPRN-VLLVGPTGCGKTEVARRMAMINDAPFLKVEATKFTE 191
                344444226778999**************999754223112246777777875.6789***************99988888888777766 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.14
  TIGR02639 275 keeda.ilfiDeihtivga.gatsggsldas 303
                + e+  ++fiDei  i +     sg s das
  MMETSP1061-20121228|622_1 342 AVEESgVVFIDEIDKICSPkEGISGRSADAS 372
                444444********99976145677777776 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0046
  TIGR02639 635 fsPefrnrldaiikfedlseevlekivkkeleelekk....Laekkveleleddaikylaekg.....ydeefGarelkrvieeeikk 713
                  Pe + rl   ++ + l+e+ l ki+   +++l ++    + +  vel +e++a++ +a  +       e++Gar+l+ v+e  i +
  MMETSP1061-20121228|622_1 417 LLPELQGRLPIRVELSGLTEDDLYKILTEPVANLVRQqvelIGAEGVELVFENEALREIARMAamlnkTVENIGARRLHTVLER-IME 503
                57**************************999998665222234689*********9999876522111346899**99987754.433 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0     1e-07   3.3e-05     155     213 ..     152     212 ..     118     251 .. 0.79
   2 ?    4.1   0.0     0.014       4.4     217     262 ..     347     396 ..     329     401 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1e-07
  TIGR01242 155 ppkGvllyGppGtGktllakavaeetnatfirvvgselvk.kyiGeG.arlvrevfklake 213
                 p+ vll Gp G+Gkt +a+ +a   +a f++v ++++ +  y G    +++r+++++a +
  MMETSP1061-20121228|622_1 152 TPRNVLLVGPTGCGKTEVARRMAMINDAPFLKVEATKFTEvGYHGRDvDQIIRDLMDVAMQ 212
                599**********************************987347775515678888766643 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.014
  TIGR01242 217 siifideidaiaakrldss.tsGd...revqrtllqllaeldGfdprgnv 262
                 ++fideid i++ +  +s  s d     vqr ll l+        +gnv
  MMETSP1061-20121228|622_1 347 GVVFIDEIDKICSPKEGISgRSADasaEGVQRDLLPLIEGTTINTKHGNV 396
                689********997765431343311145888888877655544555555 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   6.4e-08     2e-05      88     145 ..     152     211 ..      97     219 .. 0.86
   2 ?    2.4   0.0     0.035        11     149     173 ..     346     370 ..     334     392 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 6.4e-08
  TIGR01241  88 iPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvem.fvGvGasr.vrDlfeqak 145
                +P+ vllvGp G Gkt +a+ +a   + pf+++  ++f e+ + G    + +rDl++ a 
  MMETSP1061-20121228|622_1 152 TPRNVLLVGPTGCGKTEVARRMAMINDAPFLKVEATKFTEVgYHGRDVDQiIRDLMDVAM 211
                69*************************************974556555442688877765 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.035
  TIGR01241 149 PciifiDeiDavGrkrgaglgggnd 173
                 +++fiDeiD + + ++ + g + d
  MMETSP1061-20121228|622_1 346 SGVVFIDEIDKICSPKEGISGRSAD 370
                479*********9887665555555 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   8.4e-07   0.00027      35      60 ..     148     173 ..     140     217 .. 0.88
   2 ?   -2.6   0.0       1.3   4.2e+02     246     274 ..     205     233 ..     198     236 .. 0.82
   3 ?    0.4   0.0      0.15        49     123     143 ..     339     359 ..     330     364 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 8.4e-07
  TIGR02928  35 lrgsrpsnvliyGktGtGKtavtkkv 60 
                 ++ +p+nvl++G+tG+GKt v++ +
  MMETSP1061-20121228|622_1 148 RKEVTPRNVLLVGPTGCGKTEVARRM 173
                56789*****************9976 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.3
  TIGR02928 246 dlLreageiAeeegsekvteehvekAqek 274
                dl+ +a ++A++++ e ++e+    A+e+
  MMETSP1061-20121228|622_1 205 DLMDVAMQLAKKQQTELLKEQAESLAEER 233
                79999999999999999998876666665 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.15
  TIGR02928 123 eleeredsliivLDEiDklvk 143
                ++++ e+s ++ +DEiDk+++
  MMETSP1061-20121228|622_1 339 AIQAVEESGVVFIDEIDKICS 359
                57777888999*******983 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.3e-06    0.0014     485     540 ..     151     208 ..     110     233 .. 0.63
   2 ?   -2.6   0.0      0.84   2.7e+02     330     356 ..     256     283 ..     245     292 .. 0.70
   3 ?    2.7   0.0     0.021       6.7     273     292 ..     347     366 ..     327     393 .. 0.63
   4 ?   -2.9   0.1         1   3.3e+02     663     678 ..     491     518 ..     432     540 .. 0.40

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.3e-06
  TIGR01243 485 rppkgvllfgppgtgktllakavatesganfiavrgpeils.kwvg.esekaireifr 540
                  p+ vll gp g gkt +a+ +a   +a f+ v   +     + g + ++ ir+++ 
  MMETSP1061-20121228|622_1 151 VTPRNVLLVGPTGCGKTEVARRMAMINDAPFLKVEATKFTEvGYHGrDVDQIIRDLMD 208
                3577888888888888888888888888888887766543211222133444444444 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.84
  TIGR01243 330 alrrpgrfdreieigvpd.kegrkeilq 356
                 lr+    d+eiei vp  k+ + ei q
  MMETSP1061-20121228|622_1 256 MLRQGLLDDQEIEIDVPSqKQNQTEIDQ 283
                5665556689******972566677755 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.021
  TIGR01243 273 siifideidaiapkreevtg 292
                 ++fideid i   +e + g
  MMETSP1061-20121228|622_1 347 GVVFIDEIDKICSPKEGISG 366
                45666666666555555554 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 1
  TIGR01243 663 avvreaalaalresv............k 678
                a    ++l ++ es+             
  MMETSP1061-20121228|622_1 491 ARRLHTVLERIMESIsydaaemdtgstV 518
                2222222222222223333333333333 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.6e-06    0.0011      22      53 ..     154     185 ..     147     237 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.6e-06
  TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvlln 53 
                + v l+GP+G+Gkt +a+ +a   d P + ++
  MMETSP1061-20121228|622_1 154 RNVLLVGPTGCGKTEVARRMAMINDAPFLKVE 185
                57899*********************998776 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     6e-06    0.0019     278     335 ..     120     176 ..      90     179 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6e-06
  TIGR03922 278 qiGlervkeqvaalkssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvvaki 335
                ++G  ++k+ va      + +++     l  +++ + +ll+GP G Gkt +Ar +a i
  MMETSP1061-20121228|622_1 120 IVGQPEAKKSVAI-AMRNRWRRRQLPEDLRKEVTPRNVLLVGPTGCGKTEVARRMAMI 176
                5688888888864.34456667777889999**********************99876 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0041       1.3      27      65 ..     138     176 ..     114     186 .. 0.75
   2 ?   -1.1   0.0      0.54   1.7e+02     180     208 ..     203     231 ..     197     261 .. 0.67
   3 !    6.1   0.0    0.0035       1.1     139     193 ..     395     449 ..     387     518 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0041
  TIGR02881  27 inekrkeeglkaekqvlhmifkGnPGtGkttvarllakl 65 
                 ++++  e+l++e +   +++ G  G Gkt var +a +
  MMETSP1061-20121228|622_1 138 WRRRQLPEDLRKEVTPRNVLLVGPTGCGKTEVARRMAMI 176
                344555688999999999****************99865 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.54
  TIGR02881 180 veelleiakkmveereyklteeakaklre 208
                + +l+++a ++ ++++ +l +e + +l e
  MMETSP1061-20121228|622_1 203 IRDLMDVAMQLAKKQQTELLKEQAESLAE 231
                56899999999998888876665554433 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0035
  TIGR02881 139 dkreelvlilaGysdemdyflslnPGlksrfpisldfpdytveelleiakkmvee 193
                + + +++l +a        + +l P l+ r+pi++++   t ++l +i+ + v +
  MMETSP1061-20121228|622_1 395 NVKTDYILFIASGAFHAVKVSDLLPELQGRLPIRVELSGLTEDDLYKILTEPVAN 449
                567788888888888888888999***********************98765544 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00035      0.11      27      52 ..     150     175 ..     116     219 .. 0.72
   2 ?    3.4   0.0     0.022         7      74      94 ..     338     358 ..     322     370 .. 0.82
   3 ?   -2.3   0.0       1.2   3.7e+02     191     204 ..     472     485 ..     383     529 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00035
  TIGR00635  27 kealdhvllyGPPGlGkttlakiiak 52 
                + +   vll+GP G Gkt +a+ +a 
  MMETSP1061-20121228|622_1 150 EVTPRNVLLVGPTGCGKTEVARRMAM 175
                2245679**************98885 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.022
  TIGR00635  74 ailtaleegdvlfiDeihrls 94 
                +++ a+ee  v+fiDei ++ 
  MMETSP1061-20121228|622_1 338 SAIQAVEESGVVFIDEIDKIC 358
                57899************9875 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.2
  TIGR00635 191 srgtprianrllrr 204
                 r+  r+a  l + 
  MMETSP1061-20121228|622_1 472 LREIARMAAMLNKT 485
                23333333333333 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.4e-06     0.002     134     212 ..      94     167 ..       8     177 .. 0.72
   2 ?    0.1   0.2      0.43   1.4e+02     123     189 ..     202     264 ..     190     275 .. 0.66
   3 ?   -2.4   0.0       2.6   8.2e+02     253     283 ..     321     352 ..     317     354 .. 0.82
   4 ?   -0.4   0.1      0.64     2e+02     111     147 ..     469     505 ..     437     537 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.4e-06
  TIGR03499 134 eeedperakllkklleagvseelarelleklke..kedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKT 212
                + +++ +++l k+l+ +++ + l r+++ + ++  +       ++ r+ L + l     ++e+  +   ++LvGptG GKT
  MMETSP1061-20121228|622_1  94 KASTSIGSELNKNLKPSEIVAALDRHIVGQPEAkkSVAIAMRNRWRRRQLPEDL-----RKEVTPRN--VLLVGPTGCGKT 167
                677788888999999999999999999888777212222223344445555555.....66665555..***********9 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.43
  TIGR03499 123 llekqlselaleeedperakllkklleagvseelarelleklkekedaeeareklreaLekklsvkk 189
                +++++++ + ++  ++++++llk+  e+  +e++++ l+   +e  +a++ re++r++L++ l  ++
  MMETSP1061-20121228|622_1 202 IIRDLMDVA-MQLAKKQQTELLKEQAESLAEERILDILAGPSSE--NATRGRESFRDMLRQGL-LDD 264
                455555533.3556666666666666666666666666666555..99999999999999888.333 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 2.6
  TIGR03499 253 ilgvpvkvvkdpkelee.aleelkdkdliLiD 283
                il+v+++   +  +l++ a+++ ++  +++iD
  MMETSP1061-20121228|622_1 321 ILEVELERLLENVDLKKsAIQAVEESGVVFID 352
                78888888888888875389999999999999 PP

  == domain 4    score: -0.4 bits;  conditional E-value: 0.64
  TIGR03499 111 eelrkelkalkellekqlselaleeedperakllkkl 147
                +e  +e++ + ++l+k+++++ +++ + + +++++  
  MMETSP1061-20121228|622_1 469 NEALREIARMAAMLNKTVENIGARRLHTVLERIMESI 505
                6777888888888888888887677776666666654 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.8e-05    0.0089      31      80 ..     157     209 ..     141     222 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.8e-05
  TIGR00972  31 aliGpsGcGkstllrslnrlndl....veevrieGkvllegkdiydkkldvvel 80 
                 l+Gp+GcGk+ + r +  +nd+    ve +++  +v ++g+d+ +   d + +
  MMETSP1061-20121228|622_1 157 LLVGPTGCGKTEVARRMAMINDApflkVEATKF-TEVGYHGRDVDQIIRDLMDV 209
                599******************963222444444.58999999998877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.66
# Mc/sec: 1085.91
//
Query:       MMETSP1061-20121228|629_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 590.81
//
Query:       MMETSP1061-20121228|631_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|632_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 291.15
//
Query:       MMETSP1061-20121228|641_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|642_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 383.40
//
Query:       MMETSP1061-20121228|643_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   14.7   1.4     0.0064   14.7   1.0    3.2  3  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
  ------ inclusion threshold ------
       0.31    9.3   8.4       0.36    9.0   3.4    2.4  3  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.7      0.13   2.7e+02       6      14 ..      22      30 ..      21      31 .. 0.80
   2 !   14.7   1.0   3.1e-06    0.0064       1      29 []      60      89 ..      60      89 .. 0.94
   3 ?   -0.3   4.5      0.17   3.5e+02       9      20 ..      89     100 ..      86     105 .. 0.64

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.13
  TIGR01409  6 FLkaaaaag 14
               FL +aaa++
  MMETSP1061-20121228|643_1 22 FLAFAAAMV 30
               999999875 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3.1e-06
  TIGR01409  1 lsRRdFLkaaaaagaaaglgl.llpsparA 29
               ++RR+ L++ ++++ a++ +l  +p+ a+A
  MMETSP1061-20121228|643_1 60 VDRRQLLTTGTVTAIAGASSLlSTPNAANA 89
               68*****************999999*9998 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.17
  TIGR01409   9 aaaaagaaaglg 20 
                aa+a+++aag++
  MMETSP1061-20121228|643_1  89 AAGAGVGAAGPS 100
                456666666665 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.069   1.4e+02      18      34 ..      17      33 ..       4      49 .. 0.59
   2 ?    9.0   3.4   0.00018      0.36       7      39 ..      58      91 ..      54      96 .. 0.81
   3 ?    0.2   0.6       0.1   2.1e+02      17      24 ..      91      98 ..      80     107 .. 0.53

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.069
  TIGR02811 18 lavgaaagavaaatgrv 34
               +++ +  + +aa ++++
  MMETSP1061-20121228|643_1 17 FGTSTFLAFAAAMVTET 33
               55555544444444442 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00018
  TIGR02811  7 adlsRRdLLkglavgaaagav.aaatgrvasasa 39
               a + RR+LL   +v a+aga   + t+++a+a+ 
  MMETSP1061-20121228|643_1 58 ASVDRRQLLTTGTVTAIAGASsLLSTPNAANAAG 91
               6789******999999988762578999999876 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.1
  TIGR02811 17 glavgaaa 24
               g++vgaa+
  MMETSP1061-20121228|643_1 91 GAGVGAAG 98
               23333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 576.84
//
Query:       MMETSP1061-20121228|635_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 992.79
//
Query:       MMETSP1061-20121228|652_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         6  (0.0014627); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1061-20121228|654_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   10.3   0.5       0.34    7.6   0.1    1.9  2  TIGR01034 metK: methionine adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01034  metK: methionine adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.1   8.3e-05      0.34       8      34 ..       3      29 ..       1      32 [. 0.87
   2 ?    2.5   0.0    0.0029        12       5      32 ..      28      55 ..      25      60 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 8.3e-05
  TIGR01034  8 seGhPdkiadqisdavLdailkqdkks 34
               ++G  dki +qi da  d+i +q + +
  MMETSP1061-20121228|654_1  3 TDGTTDKIPNQIPDATTDEIPNQIPDA 29
               7899***************98887766 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0029
  TIGR01034  5 esvseGhPdkiadqisdavLdailkqdk 32
               ++ ++G  d i +qi d   d+i +q +
  MMETSP1061-20121228|654_1 28 DATTDGTTDEIPNQIPDETTDEIPNQIP 55
               57799999*********99999877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 421.11
//
Query:       MMETSP1061-20121228|658_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   15.5   0.4     0.0075   14.0   0.1    1.7  2  TIGR02869 spore_SleB: spore cortex-lytic enzyme
  ------ inclusion threshold ------
       0.56    7.6   5.0        1.3    6.3   3.5    1.6  1  TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family


Domain annotation for each model (and alignments):
>> TIGR02869  spore_SleB: spore cortex-lytic enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   3.7e-06    0.0075     165     184 ..       6      25 ..       4      34 .. 0.89
   2 ?   -0.7   0.0      0.11   2.3e+02      56      76 ..      53      73 ..      45      78 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.7e-06
  TIGR02869 165 wdPsggalyyfnpakatssW 184
                +dPs g +yy+n++  + sW
  MMETSP1061-20121228|658_1   6 VDPSSGNVYYYNADSNATSW 25 
                6*************999998 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.11
  TIGR02869 56 vdGivgeetkaalGiattqks 76
                dGi+ +e  +++G++ ++++
  MMETSP1061-20121228|658_1 53 KDGIATDEKEEEIGFEVDENA 73
               589999999999998877655 PP

>> TIGR00052  TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   3.5   0.00066       1.3      70     113 ..      15      60 ..      12      75 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00066
  TIGR00052  70 yarreefksdqll..elvaglvekaeslEdvarrEaiEEaGyqvkn 113
                y++ ++  ++++   e++ +l e+ e+ Edv+  E +E  G+   +
  MMETSP1061-20121228|658_1  15 YYNADSNATSWDRptEVSVALEEEDEEEEDVVTDEEEEKDGIATDE 60 
                5666666677777756666666666777888888877777776533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 377.76
//
Query:       MMETSP1061-20121228|665_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       368  (0.0897123); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.35
# Mc/sec: 275.29
//
Query:       MMETSP1061-20121228|666_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.33
# Mc/sec: 323.97
//
Query:       MMETSP1061-20121228|662_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00096   17.3   1.7     0.0016   16.6   1.2    1.3  1  TIGR00952 S15_bact: ribosomal protein S15


Domain annotation for each model (and alignments):
>> TIGR00952  S15_bact: ribosomal protein S15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.2   3.9e-07    0.0016      29      70 ..      91     132 ..      87     141 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.9e-07
  TIGR00952  29 lterikkLteHlkankkDhssrrgLlklvgkRrrLlkylkkk 70 
                l ++  ++++Hl++n+kD+ s+  L+ + ++ +rL +y++++
  MMETSP1061-20121228|662_1  91 LIKKAVQVRKHLEKNRKDKDSKFRLILIESRIHRLARYYRTT 132
                667778999*****************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 766.55
//
Query:       MMETSP1061-20121228|664_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-63  210.1   1.1    5.2e-62  207.1   0.8    1.9  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    1.2e-21   75.0   0.0    2.8e-21   73.8   0.0    1.7  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    1.3e-05   22.9   0.3    3.3e-05   21.6   0.2    1.8  1  TIGR03690 20S_bact_beta: proteasome, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.1   0.8   3.8e-65   5.2e-62       3     228 ..       5     253 ..       3     255 .. 0.85

  Alignments for each domain:
  == domain 1    score: 207.1 bits;  conditional E-value: 3.8e-65
  TIGR03633   3 YDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklleae.siekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeyk........edl.......sldeaielalkalakale...eelkaeevevavveveekkf...rklskeevekl 228
                YD + t fsP+Grl+qveYa ea+  + t+vGi +k+g+v+++++rits ll ++ + ek +++ +h+++  aGl aDa +lid+ar  a ++ +tY+epi ve+l+ +v+++kq ytq GG rPfGva+l+aG d++ + +l+++dPsG++  +ka++iGa++++ ++ll++eyk        e+        +++ea++la+k l+k+++    + +ae++e+ ++++ e+ +   + l+k+e +k+
  MMETSP1061-20121228|664_1   5 YDSSTTTFSPEGRLHQVEYAIEAINNAGTCVGILAKDGIVMASERRITSGLLAPSkTSEKTYQLSSHISCNVAGLTADANILIDQARLRAGRYAYTYQEPIPVEQLVEHVCNYKQFYTQRGGLRPFGVAFLFAGYDEHyGFQLYQSDPSGNYSGWKATVIGANNQAGKSLLKSEYKttgegsteEEKeeegsipDVQEALKLAVKVLNKTMDgttAAAAAEKMELYTMTKGENGVcvhHILNKDEASKV 253
                9**************************************************9976267******************************************************************************9989*******************************99997333322221111122223578999*******999984435566778888877776653311144566666655 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   2.1e-24   2.8e-21       3     146 ..      33     181 ..      31     237 .. 0.92

  Alignments for each domain:
  == domain 1    score: 73.8 bits;  conditional E-value: 2.1e-24
  TIGR03634   3 TtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllk....sskflpflvqllvgGvde.egpklyslDplGsiiedkytatGsGspvalgvLedeYee 146
                T vGi +kdg+v+A+++r++ g l  sk+ +K ++++ +i+  +aG+ +da+ l++  +  a  y  + +++i+v++l + + n  +       + pf v +l++G+de  g +ly+ Dp+G++   k t+ G+  +   ++L +eY++
  MMETSP1061-20121228|664_1  33 TCVGILAKDGIVMASERRITSGLLAPSKTSEKTYQLSSHISCNVAGLTADANILIDQARLRAGRYAYTYQEPIPVEQLVEHVCNYKQfytqRGGLRPFGVAFLFAGYDEhYGFQLYQSDPSGNYSGWKATVIGANNQAGKSLLKSEYKT 181
                99****************************************************************************999998643111134689************9678***********************************86 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   2.4e-08   3.3e-05       4     115 ..      30     142 ..      27     258 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.4e-08
  TIGR03690   4 hgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnla.aalqGlavvpllvGydle 115
                ++ t v +  k+G+++a +rr t+G l  s+  ek ++   + +  +aG ++ a  l+   ++    y      p+ +e  ++++++  +       l+ + v  l++Gyd++
  MMETSP1061-20121228|664_1  30 NAGTCVGILAKDGIVMASERRITSGLLAPSKTSEKTYQLSSHISCNVAGLTADANILIDQARLRAGRYAYTYQEPIPVEQLVEHVCNYKQFYTQrGGLRPFGVAFLFAGYDEH 142
                6789999999****************************999988888887655544444444455555555555666666666655543332221356677777778888773 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1136.81
//
Query:       MMETSP1061-20121228|673_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|676_1  [L=1220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-12   42.3 155.3      9e-05   18.1  23.7    4.2  4  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    7.1e-10   35.1 162.3    5.7e-08   28.8  35.8    4.3  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3  29.4     3e-07   0.00062     230     489 ..      51     315 ..      41     340 .. 0.75
   2 !    9.7  26.7   1.6e-05     0.032     227     497 ..     619     884 ..     591     887 .. 0.72
   3 !   16.9  22.8     1e-07   0.00021     675     909 ..     819    1045 ..     815    1050 .. 0.86
   4 !   18.1  23.7   4.4e-08     9e-05     324     497 ..    1042    1215 ..    1035    1220 .] 0.84

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3e-07
  TIGR02169 230 lkelealekqkekiekelaeleeelekleeeieelekeleei...ekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleel....aeeikkaeqkleqlk.edlekaekelrklkeeleklekelsel 489
                ++++ ++e ++ +++++ +e  +++ek+++e  +++k+l e+    k l+++    +k   +  l+v++k+e ++ e++++++  +e ++e     ++++ +e++i++++ +ie l++++e+e+ ++++ +++ +e+++  +el++++   d e  +l  e ++l+++ +k+ + +ne k e ++  e  k le + a   ae++++eek+a++ ee+ e     +  +k++ ++++    +  ++  +e++kl+e+++ l  e+++ 
  MMETSP1061-20121228|676_1  51 SRSVATQESDLDELKSKYEETMQQMEKMKRENGQNNKRLIEMsglVKSLQDIPIGYDKSDGNAFLNVQRKIEAIQFEMKQAKKRYDELRDEKTFQTDTIKAQESHIKAMETQIELLNERLEREQSDQQEQQQQTEEKQKATDELEQQIMLQDMEIMNLMGEIDNLRKR-DKV-HLHNEKK-EPSKIGEDIKFLEVNNAAKYAEIKKMEEKLAKMREEQREQkmhqQSFLKQQSEERSGFVlQPTATTFAEISKLEEDMATLRLEQEKT 315
                56677889999999999999999******99999999877751115677777778888888999*****************************999******************************************************************999876.333.3334433.566888888889999888889999999988888776554301102234444443333221334444455555555555443333332 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 1.6e-05
  TIGR02169 227 tlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkiekl..geeeqlavkekleelk..aeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaele 497
                ++ l++ ++ + +   +ek+l+++  + ekl +  +    ++ ++ k+lee nkk+++   ++ +  ++ + +++       ++l+++ +   +++e+ ++   ++e++++klk+e+ ++ +e+e++kk+ ++l  e+ +l ++ +++++         a+l + ++++  kl ++ ee ++l+re+dr  + l+ ++ +++   +++++ ++  ++l   +e  +e +++  q+l    ++l++++++  +  e++e+l++e  ++  e++ l+
  MMETSP1061-20121228|676_1 619 SVSLARTREEQVEDLLLEKQLKDALDKYEKLMSDYNGFVSKSDAKMKTLEEENKKLRNSpsTSFKFGTFETVIKDSDdkKRAKRLKSENKMLLKNMEKQNDIMMQTESKYEKLKQEHLAIVEELEQKKKRYDQLAMEFTDLTDRSMDVKS--------YARLEALHQAVVMKLADIGEENDKLERERDRAVDLLESKNIQIRAFDQAIAESNKVETDLLILQEVHEETVSEL-QNLADQYKELKHLHDKETENVENIEALQHEYASAMAEMEILK 884
                455555666666666689999999999999999999999*****************9752155567788999987651144566777777777888888888899************************************999998765........445555566677788889999999999999999****9999999999999876655555544444333333332.333333444444444444455555555555555555555544 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 1e-07
  TIGR02169  675 eklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeel 909 
                 +++++++ +l  L++  e+  sel+++  + +el++  +++++++e+ie+ +++  +++ ++ e l++++++ls ++ +l+e + +++ le e+++ +e+   +k++      + ++ +++ + ++++kl++e+s+  a+l+++e ++n ++  +e++ +e++++++  e+++++ +e  ++ e+ +++++ + e+ e+l+a+  +L+e++ +L++  ++++++    e+kke++
  MMETSP1061-20121228|676_1  819 AESNKVETDLLILQEVHEETVSELQNLADQYKELKHLHDKETENVENIEALQHEY-ASAMAEMEILKKSNAELSGIDSKLNESEVRVTVLEGELKKSKEDFMTVKKK-----SSARQGQLRDVIAQYKKLKQEHSDTCAKLSHLEVAINGSD--NEVAIKEMRKMEDALEQAKKNSQEAIEAKEAREGDMRIVLEHYEKLKAKFDKLQEKYDGLAEATRHHSENPVDGEEKKEDM 1045
                 5677788888888888888888888888888888888888888888888766554.455667789999999999999999999999999999999999999999886.....5678889999****************************99..999999******************99***********************************99999988887777777766 PP

  == domain 4    score: 18.1 bits;  conditional E-value: 4.4e-08
  TIGR02169  324 rlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaele 497 
                 ++  + ++ d  + e+eele+ ++e kk  +  +ee++++ eele+ r++++e++++ ++l+ el+ +k +l  +++e n+    +d  +++l+ + ++ ++l++   ++++k +++ +ele  +++++++eq  +q+++   +++ +++kl+e+ + + ++l++l+ e+   +
  MMETSP1061-20121228|676_1 1042 KEDMDSSDGDYNQVEAEELEKLLKESKKSLTGKEEEINKASEELEAAREQIKELEADKEQLQVELSTMKSELLLARREANKAVERKDNGQDHLRTAIADHHRLQQTYSSLQKKFEAVRAELEITKQQVNAHEQAEKQARKRATSVHTQYKKLQEDHDVVVERLEKLKIEMTISR 1215
                 444455566677788999999999999999999999999999999999999999999999999999999999999999999998999999999999999999999999999999999999999999999999999999999999999999999999999999999988876655 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9  33.0   6.8e-06     0.014     248     518 ..      47     313 ..      39     329 .. 0.67
   2 ?   -0.8   3.9     0.024        50     823     926 ..     587     674 ..     510     680 .. 0.48
   3 !   14.1  26.3   7.3e-07    0.0015     238     498 ..     697     958 ..     689     968 .. 0.51
   4 !   28.8  35.8   2.8e-11   5.7e-08     214     486 ..     938    1211 ..     938    1218 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.8e-06
  TIGR02168 248 lkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerle....qlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealee....leeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknks 518
                ++++++++++ e++l+el++++ee++++++++++e  + +k+l e++  ++ l+     ++++      ++++++e+++ ++++++++ +el++e++ +++ ++  +  ++++e ++e +++ le  +s ++e++++ ee++++ +ele+q+  ++ e+ +l  e+ +l +r +  + ++  ++k+ +++ +++k l+ + + + +e++++ee+l++++e+++e    ++  l++++++         +    l+ +++   + ++l+e++++l  +++
  MMETSP1061-20121228|676_1  47 IASSSRSVATQESDLDELKSKYEETMQQMEKMKRENGQNNKRLIEMSGLVKSLQDIPIGYDKSDGnaflNVQRKIEAIQFEMKQAKKRYDELRDEKTFQTDTIKAQESHIKAMETQIELLNERLEREQSDQQEQQQQTEEKQKATDELEQQIMLQDMEIMNLMGEIDNLRKRDK-VHLHN--EKKEPSKIGEDIKFLEVNNAAKYAEIKKMEEKLAKMREEQREqkmhQQSFLKQQSEE---------RSGFVLQPTATTFAEISKLEEDMATLRLEQE 313
                567778888889999999999999999999999999999999999999999988766666555431222689999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988843.33333..233455555555555555555555555555555554444433000033333333333.........3333333333333333333333333333333 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.024
  TIGR02168 823 ekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelrekl 926
                +++++ +s+ ++i +  +elee ++++ e +++++ ++ + e+ e+    le++l+++l+++              e+l+++ +   +k +++ + lee ++kl
  MMETSP1061-20121228|676_1 587 STRTESRSILEQIPEEGEELEESDSEWGEGNDSVSLARTREEQVED--LLLEKQLKDALDKY--------------EKLMSDYNGFVSKSDAKMKTLEEENKKL 674
                2233333333444444444444444444444443322222222222..23333333333333..............2222222222222222222222222222 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 7.3e-07
  TIGR02168 238 keeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleel...esrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesles 498
                k++ ++l++e k + +++e+ ++ + ++e+++e+l++e+    eele+ +k++++l+ e  +l+ + +  k+  ++le+  +++  +l++  +++++le+e ++  + le+ + ++ +++++++e+++   +l   ++  ee   el++l+++++el++  ++ ++++e++ea  ++ ++  + + +  ++ +++l+ ++++l+e + +++ le el++ +e++ +++++ +  + +l+ +  +++k+++e++   a+l  le 
  MMETSP1061-20121228|676_1 697 KKRAKRLKSENKMLLKNMEKQNDIMMQTESKYEKLKQEHLAIVEELEQKKKRYDQLAMEFTDLTDRSMDVKSY-ARLEALHQAVVMKLADIGEENDKLERERDRAVDLLESKNIQIRAFDQAIAESNKVETDLlilQEVHEETVSELQNLADQYKELKHLHDKETENVENIEALQHEYASAMA-EMEILKKSNAELSGIDSKLNESEVRVTVLEGELKKSKEDFMTVKKKSSARQGQLRDVIAQYKKLKQEHSDTCAKLSHLEV 958
                4455556666666666666666666666666666666666666666666666666666666666665555544.3455555555555555555555666666666656666666666666655555444444311123333333334444444444444444444444444444444333332.22223333345555666666666666666666666666666666666666666666666666666666666666555553 PP

  == domain 4    score: 28.8 bits;  conditional E-value: 2.8e-11
  TIGR02168  214 kykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleele.eqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeel 486 
                 +yk+lk+e +++ ++l+ l++    +  e + +e++++e+ le+++++ +e+ e+ e  +  ++ + e +e+l++++++l+++ + l +  ++++e+  + e+++e ++  + + ++ + eele+ l+e+++ l+  +ee++++++ele+a+++++ele+ +e+l+ el + +se+  ++++++++ ++  + +++l  + + ++rl+q+ ++l+kk+e+++ael+ ++++++ +e+++++++++  ++ +++++l+e  + + ++l+k++ e+
  MMETSP1061-20121228|676_1  938 QYKKLKQEHSDTCAKLSHLEVAINGSDNEVAIKEMRKMEDALEQAKKNSQEAIEAKEAREGDMRIVLEHYEKLKAKFDKLQEKYDGLAEATRHHSENPVDGEEKKEDMDsSDGDYNQVEAEELEKLLKESKKSLTGKEEEINKASEELEAAREQIKELEADKEQLQVELSTMKSELLLARREANKAVERKDNGQDHLRTAIADHHRLQQTYSSLQKKFEAVRAELEITKQQVNAHEQAEKQARKRATSVHTQYKKLQEDHDVVVERLEKLKIEM 1211
                 69999999999999999999988888888888888888888888888888888888888888888889999999***************999999998777777666651566778889999*****************************************************************************99999*******************************************************999999999888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       703  (0.17138); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.72u 0.20s 00:00:01.92 Elapsed: 00:00:01.12
# Mc/sec: 1425.02
//
Query:       MMETSP1061-20121228|682_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 2511.36
//
Query:       MMETSP1061-20121228|678_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-09   33.6   5.7      0.007   13.2   1.2    3.2  3  TIGR02037 degP_htrA_DO: peptidase Do
      1e-07   29.0   0.8     0.0022   14.7   0.0    3.1  3  TIGR00054 TIGR00054: RIP metalloprotease RseP
      2e-05   21.6   0.4       0.31    7.8   0.0    3.3  3  TIGR02860 spore_IV_B: stage IV sporulation protein B
      0.002   15.6   0.0        3.6    4.9   0.0    3.2  3  TIGR01713 typeII_sec_gspC: general secretion pathway protein C


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.2   6.8e-06     0.007     240     354 ..      43     158 ..      31     209 .. 0.73
   2 !   10.5   0.0   4.3e-05     0.044     253     318 ..     230     295 ..     218     301 .. 0.84
   3 !    9.6   0.0   7.9e-05     0.081     356     428 ..     374     448 ..     349     452 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.8e-06
  TIGR02037 240 vkiqevtkdlakslgleka..kGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkeaeeekasseksekkellglsvadls 354
                +++ + ++d++  ++le+     + v++++k++      l+ GDv+l+vn k++++ +     ++ ++  k++++ + Rk  ++   ++ k++++++++++++++++++   + +++
  MMETSP1061-20121228|678_1  43 ITVRKEDPDAKAGIQLEQDstGTVRVTNIAKNGLFGDTQLEIGDVVLSVNKKRLSEGEGPDVLLSVVHKFKSISIAV-RKPPKEGAPLKTKNSKKKQDQAKDNNHSKVDTYYMGTVK 158
                66777777888888877664245679999999999999999999999999999999999999999999999999876.555566677777777777777776666666655555555 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 4.3e-05
  TIGR02037 253 lglekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkg 318
                lg ++++  +v ++l+gsp +   l++GD il++n+ + +++ d + a++ l+  + v   ++ +g
  MMETSP1061-20121228|678_1 230 LGARNKNELVVKTILRGSPFRGTKLRVGDRILSINDMSFRRHVDAEYAVSILELARLVVTLVVEHG 295
                6777778889999********************************999999988877776666665 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 7.9e-05
  TIGR02037 356 eaakk.kkskeekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeakkker.vlllvergge 428
                + ++k + ++++++ v v+k++k+s +a + l  gd +ls+++ +++s  e + +l++   +   v++ v ++++
  MMETSP1061-20121228|678_1 374 KHKQKrRGQRRKTTWVYVDKIEKDSIFAGTSLAVGDKVLSIDNVDIRSRPEPTLALQTCCASTEtVTMVVLKDKK 448
                44444355677778899******************************9999999998765554437777777765 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0    0.0068         7     129     180 ..      66     119 ..      52     149 .. 0.75
   2 !   14.7   0.0   2.2e-06    0.0022     153     245 ..     166     279 ..     158     295 .. 0.70
   3 !    7.7   0.0   0.00029       0.3     130     192 ..     390     453 ..     381     461 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0068
  TIGR00054 129 kvieeldknsialeakiedgdeilsvdgkkikdfk..dvrkqlaekagevsvei 180
                 ++ +++kn      ++e gd++lsv++k++ + +  dv   +++k +++s+ +
  MMETSP1061-20121228|678_1  66 VRVTNIAKNGLFGDTQLEIGDVVLSVNKKRLSEGEgpDVLLSVVHKFKSISIAV 119
                578889999999999999999999999999986432277777777777777666 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 2.2e-06
  TIGR00054 153 svdgkkikdfkdvrkqlae....kagevsveilaere........nitleeeke.........lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklkswrdlvklvk 245
                +v+g+ i+d++dv     +    k+ + +++i++++           ++ ++ +         +   ++k+elv++++   sp     l+ GD+il+i+++  +  +d  ++v 
  MMETSP1061-20121228|678_1 166 KVKGNGIEDYDDVSDEDDDddsqKQDKHTTTISVQKTnplpehspRSVVTKRAKkhqsdstglILGARNKNELVVKTILRGSPFRGTKLRVGDRILSINDMSFRRHVDAEYAVS 279
                56666666666665544331110334455666664444555555533333333346777888889999***************************************9999886 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.00029
  TIGR00054 130 vieeldknsialeakiedgdeilsvdgkkikdfkdvrkqlaeka.gevsveilaerenitleee 192
                 +++++k+si +   ++ gd++ls+d+  i + ++ +  l++   ++++v++++ +++ +++e+
  MMETSP1061-20121228|678_1 390 YVDKIEKDSIFAGTSLAVGDKVLSIDNVDIRSRPEPTLALQTCCaSTETVTMVVLKDKKVFKEK 453
                57899*****************************999999999878888888888999999876 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.2    0.0028       2.8     129     186 ..      80     141 ..      47     168 .. 0.77
   2 !    7.8   0.0    0.0003      0.31     124     167 ..     247     292 ..     239     299 .. 0.78
   3 !    5.2   0.0    0.0018       1.8     129     177 ..     403     453 ..     391     467 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0028
  TIGR02860 129 agiqvGDlilkvngekikeeedvaklineag.geklkltikR...kkkkiekklkpvkekee 186
                +++++GD++l+vn++++ e e    l++  +  +++++ +++   +++ +++k +++k+++ 
  MMETSP1061-20121228|678_1  80 TQLEIGDVVLSVNKKRLSEGEGPDVLLSVVHkFKSISIAVRKppkEGAPLKTKNSKKKQDQA 141
                679**************998865555555443577777777522255667777666666554 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0003
  TIGR02860 124 sPaeeagiqvGDlilkvngekikeeedvaklineag..geklklti 167
                sP + ++++vGD+il++n+ + +++ d +  ++  +     ++l++
  MMETSP1061-20121228|678_1 247 SPFRGTKLRVGDRILSINDMSFRRHVDAEYAVSILElaRLVVTLVV 292
                79999*****************999998877766553244455555 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0018
  TIGR02860 129 agiqvGDlilkvngekikeeedvaklineag..geklkltikRkkkkiekk 177
                + + vGD +l++++ +i++  + +  ++     +e++++++ ++kk +++k
  MMETSP1061-20121228|678_1 403 TSLAVGDKVLSIDNVDIRSRPEPTLALQTCCasTETVTMVVLKDKKVFKEK 453
                5689***************999888888755559**********9998865 PP

>> TIGR01713  typeII_sec_gspC: general secretion pathway protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0035       3.6     196     248 ..      69     121 ..      58     126 .. 0.88
   2 !    3.5   0.0    0.0093       9.6     202     236 ..     247     281 ..     239     294 .. 0.82
   3 ?    3.2   0.0     0.012        12     200     241 ..     396     437 ..     384     448 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0035
  TIGR01713 196 npgkdpslFekvgLqdgDiavalNgldlrdeeeakqvlqslaeetelkltveR 248
                    +  lF    L  gD+++++N   l ++e    +l+ +++ +++++ v++
  MMETSP1061-20121228|678_1  69 TNIAKNGLFGDTQLEIGDVVLSVNKKRLSEGEGPDVLLSVVHKFKSISIAVRK 121
                55567789999************************************999975 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0093
  TIGR01713 202 slFekvgLqdgDiavalNgldlrdeeeakqvlqsl 236
                s F+   L+ gD ++++N ++ r + +a+ + + l
  MMETSP1061-20121228|678_1 247 SPFRGTKLRVGDRILSINDMSFRRHVDAEYAVSIL 281
                6699999****************998888777654 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.012
  TIGR01713 200 dpslFekvgLqdgDiavalNgldlrdeeeakqvlqslaeete 241
                + s F    L  gD ++++ ++d+r+  e   +lq     te
  MMETSP1061-20121228|678_1 396 KDSIFAGTSLAVGDKVLSIDNVDIRSRPEPTLALQTCCASTE 437
                667899999*****************9998888887655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1764.88
//
Query:       MMETSP1061-20121228|680_1  [L=759]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.10s 00:00:00.44 Elapsed: 00:00:00.57
# Mc/sec: 1727.24
//
Query:       MMETSP1061-20121228|687_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.4   1.2      0.071   10.0   0.1    2.1  2  TIGR00750 lao: LAO/AO transport system ATPase
  ------ inclusion threshold ------
       0.15    8.3   4.9       0.15    8.3   3.4    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0013       2.6     167     191 ..       2      26 ..       1      32 [. 0.86
   2 !   10.0   0.1   3.5e-05     0.071     156     190 ..      33      67 ..      30      90 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0013
  TIGR00750 167 kaGvleiaDivvvnkaDkeeaeker 191
                k Gv e  D vv+ k+D +e e+  
  MMETSP1061-20121228|687_1   2 KDGVQETEDSVVLEKDDVPETEESL 26 
                89*****************999654 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 3.5e-05
  TIGR00750 156 lagtGDdvqaikaGvleiaDivvvnkaDkeeaeke 190
                +++t D + + k Gv e  D vv  k+D +e e+ 
  MMETSP1061-20121228|687_1  33 VPETEDSLVSEKDGVQETEDSVVSEKDDVPETEES 67 
                799**************************999863 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   3.4   7.5e-05      0.15      66     128 ..      21      83 ..       2      93 .] 0.49

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 7.5e-05
  TIGR03319  66 elekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeele 128
                e+e+ l ++++++ ++e+ l ++++ +++ ++++ ++++++ ++e++l+ ++ +++e+e++l 
  MMETSP1061-20121228|687_1  21 ETEESLISEKDDVPETEDSLVSEKDGVQETEDSVVSEKDDVPETEESLKPEKDDVQETEDSLV 83 
                334444445555555555555555555555555555555555555555555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.22s 00:00:00.35 Elapsed: 00:00:00.75
# Mc/sec: 163.67
//
Query:       MMETSP1061-20121228|683_1  [L=862]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.9   0.1       0.44    8.4   0.0    2.3  2  TIGR03668 Rv0121_F420: PPOX class probable F420-dependent enzyme, Rv0121 family


Domain annotation for each model (and alignments):
>> TIGR03668  Rv0121_F420: PPOX class probable F420-dependent enzyme, Rv0121 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00011      0.44      27      70 ..     528     573 ..     521     578 .. 0.84
   2 ?    1.6   0.0     0.014        58      44      85 ..     783     824 ..     774     837 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00011
  TIGR03668  27 hlvPvvfavaagavaea..aaevytavDakpkrtrrLrRlrnieen 70 
                hl Pv+f +  g + +a    ++   +D k+++ rr +Rl+ ++++
  MMETSP1061-20121228|683_1 528 HLPPVCFEMYDGGKLDAmkRRRMLRNIDPKRQERRRAKRLAELKAK 573
                99*****998765544434899*******************99875 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.014
  TIGR03668  44 aaevytavDakpkrtrrLrRlrnieenprvsllvDaYddDWt 85 
                +a+   ++ +kpk t + r   +i e  ++  ++D+ d+D+t
  MMETSP1061-20121228|683_1 783 DASQKKSITKKPKATIQFRTKFDIVELDAAGHVIDKGDNDFT 824
                5555668999******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 2031.69
//
Query:       MMETSP1061-20121228|688_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   14.7   1.9     0.0064   14.6   1.3    1.2  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family
  ------ inclusion threshold ------
      0.029    9.8   4.2      0.029    9.8   2.9    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.029    9.9   4.7      0.028    9.9   3.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.3   4.7e-06    0.0064      57      92 ..       3      38 ..       1      53 [. 0.83

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.7e-06
  TIGR03495 57 krneeaqaqLrqqlaqaeallaqrekrierLlrene 92
                +++e+ ++L+++ ++++a+l+q+e+ i++Ll+e  
  MMETSP1061-20121228|688_1  3 AKSKEEIQALQETISSTSAALEQKETAITQLLKEKT 38
               566778889999999999999999999999999965 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   2.9   2.1e-05     0.029     852     897 ..       4      49 ..       1      57 [. 0.48

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2.1e-05
  TIGR02169 852 eiekeieelkakleeleeeleeleaavreLeeelkdLkkereelea 897
                + ++ei++l+  + ++++ le++e a+ +L +e+ +L k  +e+e 
  MMETSP1061-20121228|688_1   4 KSKEEIQALQETISSTSAALEQKETAITQLLKEKTGLDKHLKEVED 49 
                3344444455555555555555555555555555555544444443 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   3.3   2.1e-05     0.028     850     897 ..       3      50 ..       1      58 [] 0.44

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 2.1e-05
  TIGR02168 850 eeleeeiesleaeieeleeeleeleeeleellkekasleealaelree 897
                ++ +eei++l++ i++++++le+ e+++++llkek+ l+++l+e++++
  MMETSP1061-20121228|688_1   3 AKSKEEIQALQETISSTSAALEQKETAITQLLKEKTGLDKHLKEVEDA 50 
                344444444444444444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       318  (0.0775232); expected 82.0 (0.02)
Passed bias filter:                      242  (0.0589956); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 283.53
//
Query:       MMETSP1061-20121228|686_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.22
# Mc/sec: 1199.90
//
Query:       MMETSP1061-20121228|681_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.4   0.1     0.0014   16.0   0.0    1.2  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J
     0.0023   15.6   0.0     0.0039   14.9   0.0    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
  ------ inclusion threshold ------
      0.023   11.8   0.0      0.044   10.9   0.0    1.5  2  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase


Domain annotation for each model (and alignments):
>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     1e-06    0.0014      29     106 ..     160     241 ..     133     255 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1e-06
  TIGR00438  29 likkGklvldlGaaPGGWsqvavekvgekGlviavdlqpvk..pienvdfirGdft..deevlekilervgddkvdvvisda 106
                 ik+G++vl +Gaa G     + ++vg++G v av++ +    ++ +v  +r ++    e++ + ++ r+    vd v++d+
  MMETSP1061-20121228|681_1 160 WIKPGSKVLYIGAAAGTSVSHVSDIVGKDGAVYAVEFSHRPgrDLLGVAKLRTNIIpiVEDARHPLKYRMLVGMVDCVFADV 241
                49*********************************99765444777888888776422344444444444444466666665 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.9e-06    0.0039      72     109 ..     158     195 ..     145     208 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.9e-06
  TIGR00080  72 lLelkagakvLeiGtGsGYqaavlaelvgrdglvvsie 109
                 + +k+g+kvL iG+ +G     ++ +vg+dg v ++e
  MMETSP1061-20121228|681_1 158 NIWIKPGSKVLYIGAAAGTSVSHVSDIVGKDGAVYAVE 195
                45599*******************************99 PP

>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       1.2   1.6e+03     249     261 ..      87      97 ..      77      98 .. 0.67
   2 ?   10.9   0.0   3.2e-05     0.044      70     111 ..     162     203 ..     143     250 .. 0.81

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.2
  TIGR00446 249 PqsedveGFFvak 261
                P  +  eG Fva+
  MMETSP1061-20121228|681_1  87 P--HRHEGIFVAR 97 
                4..4456999997 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 3.2e-05
  TIGR00446  70 eekervlDlaaaPGgkttqisallkneGaivanevsksRvkv 111
                ++ ++vl + aa G+   ++s ++  +Ga+ a+e+s+   + 
  MMETSP1061-20121228|681_1 162 KPGSKVLYIGAAAGTSVSHVSDIVGKDGAVYAVEFSHRPGRD 203
                68899******************************9975554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 1096.52
//
Query:       MMETSP1061-20121228|696_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 522.88
//
Query:       MMETSP1061-20121228|698_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 521.96
//
Query:       MMETSP1061-20121228|693_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1628.94
//
Query:       MMETSP1061-20121228|701_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 753.44
//
Query:       MMETSP1061-20121228|702_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 2037.91
//
Query:       MMETSP1061-20121228|705_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.30
# Mc/sec: 2450.60
//
Query:       MMETSP1061-20121228|708_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       339  (0.0826426); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1673.86
//
Query:       MMETSP1061-20121228|711_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-13   48.4   8.3    2.1e-13   48.4   5.8    2.7  2  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   5.8   5.1e-17   2.1e-13       6     138 ..      78     210 ..      74     212 .. 0.87
   2 ?   -1.9   3.1      0.18   7.3e+02      16     113 ..     325     423 ..     310     427 .. 0.67

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 5.1e-17
  TIGR00880   6 gyAlgqlvvsplsglltdr..vGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfll 138
                ++ ++q++ + l+g+ltd   +G+k +l++++   +l+ l+++    +t li++ril+G+   ++ v+ ++l+ + +++e+r++ +g l +  +++ ilGp +Ga+l++++ ++a+ l++++l +l+++l  ++l
  MMETSP1061-20121228|711_1  78 VFSASQIIGGVLLGALTDArvLGKKTMLFLSFGGSALAYLMIT-YGGFTALILSRILVGLVKQTMTVT-TSLLTKCTTQENRTKYMGRLESSSTAAWILGPSIGALLFKYVDHKAPALFASCLFVLNMVLAGIFL 210
                57889***********984337888888888888777777665.566899***********9886555.5**********************************************************9987776 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.18
  TIGR00880  16 plsglltdrvGrkpvllvglfifvlsqllfalssnitvli.iarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqa 113
                 l++++ +r G +   +++ ++ ++++  f + +n++v++ +    +++++ ++ v+ ++l+  +++ +    +++ + + +++ ++  p+  a+l+ +
  MMETSP1061-20121228|711_1 325 SLIQPVLERAGGERRTVFLAAVLLAGSTFFEARQNFVVFLvFICPSIALSTTMMRVSLRSLLTQLAPGDAIFSVFAAMDVLQNATAVTVPFYRAFLFRF 423
                455555556665555566666666666666666666554404445567777777788888899999888888888888888888887777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1750.80
//
Query:       MMETSP1061-20121228|717_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   10.6   2.0      0.053   10.6   1.4    1.1  1  TIGR00233 trpS: tryptophan--tRNA ligase
        0.5    5.7   6.6       0.52    5.7   4.5    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00233  trpS: tryptophan--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.4   2.6e-05     0.053     260     299 ..       5      43 ..       1      70 [. 0.78

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.6e-05
  TIGR00233 260 lekeksgkllygelKkalievlqeflkelqekreevaeee 299
                 +++++++ l   lK+ l ++lq+ lk+ q++ ++ ++++
  MMETSP1061-20121228|717_1   5 KRNKRKQT-LQQTLKQTLKQTLQQTLKQTQRRNAQATKKQ 43 
                33444455.5999********************9999874 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.5   0.00026      0.52     931    1008 ..      10      86 ..       1      90 [. 0.54

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00026
  TIGR00927  931 deeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeeneepls 1008
                 ++  +++ +++ ++t +q l+  ++ +a+   k   +++++d Gd e  +  +e + e ++e + e   e +++ pl 
  MMETSP1061-20121228|717_1   10 KQTLQQTLKQTLKQTLQQTLKQTQRRNAQA-TKKQPNNDDGDNGDRETTNRRNETNAETNDETNAETTVEPQQNAPLG 86  
                 233333344444555555555555555444.44445566677778777777777766666666666666777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       569  (0.138713); expected 82.0 (0.02)
Passed bias filter:                      326  (0.0794734); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 522.22
//
Query:       MMETSP1061-20121228|723_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|718_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   11.9   0.1      0.014   11.6   0.1    1.1  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
      0.037   10.2   0.1      0.045    9.9   0.0    1.0  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.7e-06     0.014     590     617 ..      27      54 ..      22      83 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.7e-06
  TIGR02696 590 igevigpkgkvinsiqdetgaeisiedd 617
                +g +ig kg +in++q+ +g +i i++d
  MMETSP1061-20121228|718_1  27 MGRIIGTKGITINDLQKRSGCDIQINQD 54 
                799***********************98 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   2.2e-05     0.045     560     612 ..      25      82 ..      17      91 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 2.2e-05
  TIGR03591 560 dkireviGkgGkvireiieetgakidiedd...Gt.vkiaaa.dkeaaekakklieei 612
                  ++++iG++G +i+++++++g+ i+i++d   G+ ++i+   +++ +e+ak++++e+
  MMETSP1061-20121228|718_1  25 HYMGRIIGTKGITINDLQKRSGCDIQINQDvqpGRdCEITLRgTRQGIEMAKNMLREV 82 
                56789***********************996663224444331345566777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1352.89
//
Query:       MMETSP1061-20121228|712_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.2e-190  631.5   0.4   2.6e-190  631.2   0.3    1.1  1  TIGR01438 TGR: thioredoxin and glutathione reductase
   1.5e-108  361.7   0.1   1.8e-108  361.4   0.1    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
   1.6e-103  344.5   0.2   2.5e-103  343.9   0.1    1.3  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    8.7e-72  240.0   1.3    1.5e-71  239.2   0.9    1.3  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    4.3e-71  237.8   0.0    5.7e-71  237.4   0.0    1.1  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    7.8e-66  220.8   0.0    1.3e-65  220.0   0.0    1.3  1  TIGR02053 MerA: mercuric reductase
    7.5e-46  154.7   0.0    1.2e-45  154.1   0.0    1.2  1  TIGR03452 mycothione_red: mycothione reductase
    5.6e-17   59.4   0.4    1.7e-15   54.6   0.0    2.2  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    2.2e-09   34.1   0.1    4.8e-09   33.0   0.0    1.5  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    1.3e-06   25.3   1.1    0.00034   17.3   0.0    2.6  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    2.1e-06   24.6   3.1      0.067    9.8   0.1    3.6  4  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    3.6e-06   23.5   0.5     0.0016   14.7   0.1    2.1  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    1.3e-05   21.0   0.2    1.9e-05   20.5   0.2    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    1.6e-05   21.7   0.1      0.018   11.7   0.0    2.4  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    2.1e-05   21.7   0.0    0.00072   16.7   0.0    2.1  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    0.00047   15.5   0.3     0.0089   11.3   0.0    2.1  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00058   15.9   0.4      0.001   15.1   0.3    1.3  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
     0.0013   16.3   0.6     0.0035   14.9   0.4    1.7  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0021   15.3   3.9      0.052   10.7   2.3    2.1  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0023   14.4   1.7       0.22    7.8   0.1    2.7  3  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
     0.0025   14.1   0.7     0.0066   12.8   0.2    1.8  2  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
     0.0028   14.3   5.1       0.01   12.5   0.9    2.8  4  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.005   13.2   0.6      0.022   11.1   0.1    2.1  3  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0052   13.7   0.6      0.013   12.4   0.2    1.8  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
  ------ inclusion threshold ------
       0.01   12.9   0.2      0.021   11.9   0.1    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.022   11.4   1.6      0.041   10.5   0.1    2.0  2  TIGR02730 carot_isom: carotene isomerase
      0.042   10.8   0.3       0.07   10.1   0.2    1.3  1  TIGR01790 carotene-cycl: lycopene cyclase family protein


Domain annotation for each model (and alignments):
>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  631.2   0.3  1.7e-192  2.6e-190       1     483 [.     108     599 .]     108     599 .] 0.96

  Alignments for each domain:
  == domain 1    score: 631.2 bits;  conditional E-value: 1.7e-192
  TIGR01438   1 ydydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGkalk.dskkyGw.....nveeq........vkhdweklskavqdrikslnfsyrvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvlvrsillrGfdqdcavkvkeylkeqGvkfkeqvlpkkvekvea.kvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeefvklsvtkrsGsdaaktGc 483
                ydydl+viGgGsGG+aaakeaa +gakv+l dfv+p+p+Gt wG+GGtcvnvGcipkkl h  a l + ++ d++ +G      + ++             w++   ++q+ i+ lnf yrv lrek v+y+n +a+++d ++++ +dkk+  + ++a r+l+a G rp  +d + G+  l+i+sdd+f l+k+pGktl vGasy++lecaGfla+lg+dvt +vrsillrGfd++c +++++y+ke+Gvkfk qv p+k+ekve+ +++v+f+d +    + ydtvl a+Gr+ad+ kl+le+v++ +n k+ ki +++le++++p+iyavGd++++ +eltpvai+aG  la+rlf++ske +dy n+ ttvftpley++vGlsee+a+ekyGe+ +ev+hsef ple+s+ + +++s+ ++kvv  k ++er++G+h+vGpnagev+qG+ v+++ g++ k+l +t+gihp+s+ee v+ls+tk+sG+daa +Gc
  MMETSP1061-20121228|712_1 108 YDYDLVVIGGGSGGMAAAKEAALHGAKVALCDFVTPSPKGTTWGLGGTCVNVGCIPKKLFHIGATLRESIHaDANFFGIssigaKADDMmgqlptmeTDTHWDVAKSNIQNYIRGLNFKYRVRLREKSVQYLNKLAKFKDSHTVELVDKKGVVQEITASRFLVAVGGRPSPLDCVGGD--LAISSDDVFFLNKDPGKTLCVGASYISLECAGFLAGLGKDVTCAVRSILLRGFDRECSERIGNYMKEHGVKFKMQVTPTKLEKVEDdRIKVTFSDGT---DDVYDTVLAAVGRTADTAKLGLEAVNIATNPKNRKI-VTKLEQSSCPNIYAVGDVMDGCPELTPVAIQAGISLARRLFGGSKEPMDYVNICTTVFTPLEYSCVGLSEEDAIEKYGEDGIEVYHSEFLPLEWSLSQMRHDSNAFTKVVVDKRDNERILGMHYVGPNAGEVMQGYGVSMKSGITYKQLVETVGIHPTSSEEIVTLSITKSSGEDAAAGGC 599
                8*****************************************************************99998799888761111155554555565333456***********************************************************************988888..************************************************************************************8769******766...99*******************************998.579************************************************************************************************999******************************************************************************9 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.4   0.1  1.2e-110  1.8e-108       2     449 ..     109     584 ..     108     585 .. 0.93

  Alignments for each domain:
  == domain 1    score: 361.4 bits;  conditional E-value: 1.2e-110
  TIGR01421   2 eydylviGGGsGGiasarraaeyGakallve.........ekklGGtcvnvGcvPkkvmwyaaslaelle.daadyGfkse.............kenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkdetvevngke.....ytakhiliatGgkpsipeniPGaelgldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveelekaglevhklskvvkvektvegklvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvv.GkveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltkekqksr..lklvca.gkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseelvtl 449
                +yd++viGGGsGG+a+a+ aa +Gak++l +         +  lGGtcvnvGc+Pkk+   +a+l e ++ da+ +G++s               e   ++ + k + ++y+  ln  y   l +++v+ ++  a+f++++tve+ +k+     +ta   l+a Gg+ps + +  G +l+++sd++f l++ P++   vGa yi++e aG l glG +   ++r    lr+fd   se++ + ++++g++ + + +++k+ek  ++++++t+ dg + +  d+++ a+Gr  +t +lgle v+++++ k+  +v +   ++ ++iya+Gdv+ G  eltPvai+aG  l++rlf+g + + +dy n+ t vf+  e + vGl+e++aiekyG++ + vy+s+f ++ ++l++ +++s+   k+v+   ++e+++G+h +G  + e++qG++v++k G t   + +tv ihPtssee+vtl
  MMETSP1061-20121228|712_1 109 DYDLVVIGGGSGGMAAAKEAALHGAKVALCDfvtpspkgtTWGLGGTCVNVGCIPKKLFHIGATLRESIHaDANFFGISSIgakaddmmgqlptMETDTHWDVAKSNIQNYIRGLNFKYRVRLREKSVQYLNKLAKFKDSHTVELVDKKgvvqeITASRFLVAVGGRPSPL-DCVGGDLAISSDDVFFLNKDPGKTLCVGASYISLECAGFLAGLGKDVTCAVRS-ILLRGFDRECSERIGNYMKEHGVKFKMQVTPTKLEKVEDDRIKVTFSDG-TDDVYDTVLAAVGRTADTAKLGLEAVNIATNPKNRKIVTKLEQSSCPNIYAVGDVMdGCPELTPVAIQAGISLARRLFGGSK-EPMDYVNICTTVFTPLEYSCVGLSEEDAIEKYGEDGIEVYHSEFLPLEWSLSQMRHDSNafTKVVVDkRDNERILGMHYVGPNAGEVMQGYGVSMKSGITYKQLVETVGIHPTSSEEIVTL 584
                69**************************9873333322223469**************************889999*99988899999999997666789********************************************8887778888***************99.88899**********************************************96.79***********************************************.77888**************************************************96788******************9986.57*************************************************99998765325766541468*************************************************8 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.9   0.1  1.6e-105  2.5e-103       1     445 [.     108     584 ..     108     585 .. 0.92

  Alignments for each domain:
  == domain 1    score: 343.9 bits;  conditional E-value: 1.6e-105
  TIGR01424   1 ydydlfviGaGsGGvraarlaaalGakvaiaeedl.........vGGtcvirGcvPkkllvyasefaeele.dakgyGwe.ve.............kaefdwkkllakkdkeiarlsglykkllakagvellegraelvdantvevle...dgktytaekiliavGgrpvkpelPGaelaitsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeeleerGirillktvlksiekvddG.lkvtlskdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtdri.nltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekftdd.ievyraefrPmkatlsGrq..ekillklvvde.kddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeelvtm 445
                ydydl viG+GsGG++aa+ aa +Gakva+++            +GGtcv  Gc+Pkkl+  ++++ e+++ da+ +G   ++             +++ +w+   +++++ i+ l+  y+  l++ +v+ l+  a+  d++tve+ +     +++ta++ l+avGgrp   +  G +lai+sd++f l++ P + l vG+ yi+ e ag ++GlG  vt  +r   +lrgfd +   ++ + ++e+G++  ++ + +++ekv+d  +kvt s++ + v d+vl a+Gr+ ++ +lglea+ + +n ++  +v +  ++s p+iyavGdv d   +ltPvai+ + ++a   f++    +d+ ++ t+vf+  e + vGlsee+a ek+++d ievy++ef P++ +ls  +     + k+vvd+ +++++lG h vG++a+e++q+ ++++k G+t k+  +tv++hP+s+ee+vt+
  MMETSP1061-20121228|712_1 108 YDYDLVVIGGGSGGMAAAKEAALHGAKVALCDFVTpspkgttwgLGGTCVNVGCIPKKLFHIGATLRESIHaDANFFGISsIGakaddmmgqlptmETDTHWDVAKSNIQNYIRGLNFKYRVRLREKSVQYLNKLAKFKDSHTVELVDkkgVVQEITASRFLVAVGGRPSPLDCVGGDLAISSDDVFFLNKDPGKTLCVGASYISLECAGFLAGLGKDVTCAVRS-ILLRGFDRECSERIGNYMKEHGVKFKMQVTPTKLEKVEDDrIKVTFSDGTDDVYDTVLAAVGRTADTAKLGLEAVNIATNPKNRKIVTKLEQSSCPNIYAVGDVMDGCpELTPVAIQAGISLARRLFGGSKEPMDYVNICTTVFTPLEYSCVGLSEEDAIEKYGEDgIEVYHSEFLPLEWSLSQMRhdSNAFTKVVVDKrDNERILGMHYVGPNAGEVMQGYGVSMKSGITYKQLVETVGIHPTSSEEIVTL 584
                9*******************************99999*****************************9998636666776543321112222222224577899999999************************************9985433459**************999999**********************************************9996.689**********************************99889****************************************************************8758*****************************************************97669**************9755115789*****9725689**********************************************97 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.2   0.9   9.6e-74   1.5e-71       4     470 ..     110     584 ..     107     590 .. 0.87

  Alignments for each domain:
  == domain 1    score: 239.2 bits;  conditional E-value: 9.6e-74
  TIGR01423   4 ydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtgaqymdtlresagf......gweldae.....s..vkanwkaliaaknkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqmlkiegielcissneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvangidvrtnenpakveknadgskhvvfesgkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrv.mltpvainegaavvdtvfaskprktdhtkvasavfsippigvcglveeeaakky..ekvavyessftplmhnisgskyk.kfvvkivtdhadge.vlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeelcsm 470
                ydlvvig gsgg+ a  +a +l+  +va+ d  +         lggtcvnvgc+pkkl+  ga   +++   a f      g + d       +    + w    +  ++ + ++n  y   +++ + +++   +  ++d ++v   e  d k  v+e + a   l+a g  p  l+  g +l+iss++ f+l++ p ++l+vg  yis+e ag +      g +v+ a r  ++lrgfd e  +++ + ++  g++ + +  p+k+ek  d   +v+f  g++  +d v+ a+gr   +  l l+ v +    k    v +  ++  +niya+gdv d    ltpvai+ g ++   +f+      d+ +++++vf+      +gl ee+a  ky  + + vy+s f pl   +s  ++  +  +k+v d+ d e +lg+h +g  + e++q  ++ +k +    ++ +t+g+hpts+ee++++
  MMETSP1061-20121228|712_1 110 YDLVVIGGGSGGMAAAKEA-ALHGAKVALCDFVTPSPKGTTWGLGGTCVNVGCIPKKLFHIGATLRESIHADANFfgissiGAKADDMmgqlpTmeTDTHWDVAKSNIQNYIRGLNFKYRVRLRE-KSVQYLNKLAKFKDSHTV---ELVDKKGVVQE-ITASRFLVAVGGRPSPLDCVGGDLAISSDDVFFLNKDPGKTLCVGASYISLECAGFLA---GLGKDVTCAVR-SILLRGFDRECSERIGNYMKEHGVKFKMQVTPTKLEKVEDDRIKVTFSDGTDDVYDTVLAAVGRTADTAKLGLEAVNIATNPKNRKIVTKLEQSSCPNIYAVGDVMDGCpELTPVAIQAGISLARRLFGGSKEPMDYVNICTTVFTPLEYSCVGLSEEDAIEKYgeDGIEVYHSEFLPLEWSLSQMRHDsNAFTKVVVDKRDNErILGMHYVGPNAGEVMQGYGVSMKSGITYKQLVETVGIHPTSSEEIVTL 584
                9************998765.69***********999999999***************************99987632222223333211111120033445555555556677777777776665.567888888899999988...55677777666.67788899***********************************************876...56888998887.589**************************************************************************9999999999******************998747***********************************9999999***********655699**************99876256788988888865499******************************************9876 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.4   0.0   3.7e-73   5.7e-71       2     448 ..     110     582 ..     109     592 .. 0.84

  Alignments for each domain:
  == domain 1    score: 237.4 bits;  conditional E-value: 3.7e-73
  TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalve......kek....lGGtClnvGCiPtKalLksaevveelke..akelgieven..........vkldlekllerkekvvkklvgGvkaL....lkknkvevikGeaklldkkevevkkekke.kkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklkkkgvkiltnakvtevek.eedevvveakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigk.lmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeqakeeg....ievkvgkfpfaangkalaleetdGfvkvivdkk.tgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaik 448
                yd+vviGgG gG  aA +aa +g kval +      k      lGGtC+nvGCiP K l + + +++e  +  a+ +gi++ +           ++++++  +  ++ +++   G+++     l+++ v+ ++  ak++d+++ve+ ++k+  ++++a++ ++A G +p+ l   +  d  + i+s++++ l++ p + + vG+ +i +E a ++a lG +vt   + + +l  +d+e s+ + + +k++gvk++++ + t++ek e+d+++v+ +++  +   ++ vL avGr++++ +lgle++++ ++ +++  v +  + + p+iya+GDv+++ + L  vA + g+  a++++g +k+ +dy  + + ++t  e + vGl+ee+a e++    iev  ++f     + + + ++++ f kv+vdk   ++ilG+h vg++a e+++   + ++ ++t ++l +t+  HPt sE i 
  MMETSP1061-20121228|712_1 110 YDLVVIGGGSGGMAAAKEAALHGAKVALCDfvtpspK-GttwgLGGTCVNVGCIPKK-LFHIGATLRESIHadANFFGISSIGakaddmmgqlPTMETDTHWDVAKSNIQNYIRGLNFKyrvrLREKSVQYLNKLAKFKDSHTVELVDKKGVvQEITASRFLVAVGGRPSPLDC-VGGD--LAISSDDVFFLNKDPGKTLCVGASYISLECAGFLAGLGKDVTC-AVRSILLRGFDRECSERIGNYMKEHGVKFKMQVTPTKLEKvEDDRIKVTFSDG--TDDVYDTVLAAVGRTADTAKLGLEAVNIATNPKNRKIVTKLEQSSCPNIYAVGDVMDGcPELTPVAIQAGISLARRLFGGSKEPMDYVNICTTVFTPLEYSCVGLSEEDAIEKYgedgIEVYHSEFLPLEWSLSQMRHDSNAFTKVVVDKRdNERILGMHYVGPNAGEVMQGYGVSMKSGITYKQLVETVGIHPTSSEEIV 582
                9**************************9874434332.0334489**********77.5666555555444367778998544233343333334555555566677788888888875222267899****************9888887779********************.5555..599***************************************7.588899***********************988766666551334455665566..45679*****************************999******************987479***********************************************998765333377888888778889999999***********861568******************************************9875 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.0   0.0   8.6e-68   1.3e-65       1     446 [.     110     581 ..     110     588 .. 0.83

  Alignments for each domain:
  == domain 1    score: 220.0 bits;  conditional E-value: 8.6e-68
  TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlve......rGi...lGGtCvnvGCvPSKallraaevaklakkas..vgllaae..........vevdleelleqkke.vveelR..keKYedvlesydavdllegkakfkdektvkvdlgkevvg...akrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikg.lqlesvAakeGvvaAenalggaeakldlevlPkvvFtdPevAsvGlteeelakagievesrtvkleavpral....inretrGliKlvaeke.tkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEgl 446
                ydlv+iG+G++++aaa +aa  gakv+l +      +G+   lGGtCvnvGC+P K +   a +++ +++    +g+++            +++++++  + +k+ + + +R  + KY   l +   v++l+  akfkd +tv++ + k vv+   a r+l+A+G rp+  +  G     ++ s++++ l+k p + + +G+++i++E a  +a lG +vt + rs +ll   ++e s+ + ++++e Gv++  +++ ++ +k ++++++vt+    ++ +v  d++l A GR++ ++ L+Le+v++ ++ +   +v +  ++s p+iyA GDv++g ++l  vA ++G   A   +gg+++ +d+  + + vFt  e+  vGl+ee+++++  e    + + e +p ++    + ++ + + K+v++k+   ++lg++ v+++A+ev++   + +k g+t ++l++t+ +++t +E +
  MMETSP1061-20121228|712_1 110 YDLVVIGGGSGGMAAAKEAALHGAKVALCDfvtpspKGTtwgLGGTCVNVGCIPKKLFHIGATLRESIHADAnfFGISSIGakaddmmgqlPTMETDTHWDVAKSnIQNYIRglNFKYRVRLREKS-VQYLNKLAKFKDSHTVELVDKKGVVQeitASRFLVAVGGRPSPLDCVG--GDLAISSDDVFFLNKDPGKTLCVGASYISLECAGFLAGLGKDVTCAVRS-ILLRGFDRECSERIGNYMKEHGVKFKMQVTPTKLEKVEDDRIKVTFSD--GTDDV-YDTVLAAVGRTADTAKLGLEAVNIATNPKNRKIVTKLEQSSCPNIYAVGDVMDGcPELTPVAIQAGISLARRLFGGSKEPMDYVNICTTVFTPLEYSCVGLSEEDAIEKYGEDGIEVYHSEFLPLEWslsqMRHDSNAFTKVVVDKRdNERILGMHYVGPNAGEVMQGYGVSMKSGITYKQLVETVGIHPTSSEEI 581
                9**************************9864445556765558***********998877777776655443345544332000111111133344444443333033445533569998899985.*****************988554443111567*********9666555..4457999******************************************.8****************************9999999866666666655..56666.69***************************************************999****************************************************988888888888888888722224456789******986268******************************************9976 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.1   0.0   7.7e-48   1.2e-45       2     443 ..     109     579 ..     108     585 .. 0.82

  Alignments for each domain:
  == domain 1    score: 154.1 bits;  conditional E-value: 7.7e-48
  TIGR03452   2 hydliiiGtGsGnsil..derfedkriaive......kGt...fGGtclnvGciptkmfvyaaevakevkesar.lgid...aeidsv..rwp....divsrvfedridpiaas.Geeyrrgdktpnidvyesharfvgrktlrtedgee....itadqvviaaGsrpvipeaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserftelakkk.fdvrlgrnvtaaeq.dddgvtlelddGstveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvsspy.qlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwam....edteglakliadk.dtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpe 443
                +ydl++iG GsG      + + +  ++a+++      kGt   +GGtc+nvGcip k+f   a + ++++  a  +gi+   a+ d++  + p    d    v ++ i    ++   +yr   +   ++  ++ a+f +++t++  d +     ita + ++a G+rp   + +        +++d+  l++ p + + vG+ yi+le a  + +lG +vt  +rs  llr  d + ser+ +  k++ ++ +++ + t+ e+ +dd+++++  dG++   d++l a+Gr++++ +l +ea  ++++ ++r +v + +++s+ +++a+Gdv +   +l  va +    +++ l    + + +d+ ++ ++vft    ++vGl+e++a e+  +  + v +       w++     d+++++k+++dk d  ++lG h++G++a  ++q     +  g++ ++l +    ihp+ +e
  MMETSP1061-20121228|712_1 109 DYDLVVIGGGSGGMAAakEAALHGAKVALCDfvtpspKGTtwgLGGTCVNVGCIPKKLFHIGATLRESIHADANfFGISsigAKADDMmgQLPtmetDTHWDVAKSNIQNYIRGlNFKYRVRLREKSVQYLNKLAKFKDSHTVELVDKKGvvqeITASRFLVAVGGRPSPLDCVGG--DLAISSDDVFFLNKDPGKTLCVGASYISLECAGFLAGLGKDVTCAVRSI-LLRGFDRECSERIGNYMKEHgVKFKMQVTPTKLEKvEDDRIKVTFSDGTDDVYDTVLAAVGRTADTAKLGLEAVNIATNPKNRKIVTKLEQSSCPNIYAVGDVMDGCpELTPVAIQAGISLARRLFGG-SKEPMDYVNICTTVFTPLEYSCVGLSEEDAIEKYGEDGIEVYHSEFLPLEWSLsqmrHDSNAFTKVVVDKrDNERILGMHYVGPNAGEVMQGYGVSMKSGITYKQLVET-VGIHPTSSE 579
                7**********98665114556789****9766666677655579***********************98665516664222666655222331111455567777887766652559999999****************99986443322334**************98888854..455789*****************************************97.*************987765324555555555555426678***************************************************************987548*****99888888888765.5689***************************997777778877777788887522346999*****998537899******************************9875.678998765 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.3     0.083        13       2      17 ..     112     127 ..     111     131 .. 0.88
   2 !   54.6   0.0   1.1e-17   1.7e-15     146     419 ..     297     569 ..     290     581 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.083
  TIGR03385   2 ivivGgvaaGasaAsr 17 
                +v++Gg+++G++aA +
  MMETSP1061-20121228|712_1 112 LVVIGGGSGGMAAAKE 127
                79**********9965 PP

  == domain 2    score: 54.6 bits;  conditional E-value: 1.1e-17
  TIGR03385 146 kkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekkeielrln...eevksvegeekvevltsgkvyqaDlvilavGvkPnsel..ikssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGkdiefkGvlGtsivkfldltiaktGltenelkklnidyktvevkaka......kanYYPgakdlllklivek.dtkkilgaqavGkegvlkRidvlaaaikakltvkdlte 419
                +k+  k + +G+ yi+le +  l   gk+vt   rs  il + +D+e ++ + + +++++++++++    ++++ve++ + +++ +g    +D v+ avG   ++    ++  +++++ k   +v +  q s +niya+GDv++        +el P+A    ++g  +a ++ G + e   ++    + f  l+ + +Gl e+++  +++  + +ev +               +++ + k++v+k d+++ilg   vG + + + ++   + +k+++t k+l e
  MMETSP1061-20121228|712_1 297 NKDPGKTLCVGASYISLECAGFLAGLGKDVTCAVRS--ILLRGFDRECSERIGNYMKEHGVKFKMQvtpTKLEKVEDDRIKVTFSDGTDDVYDTVLAAVGRTADTAKlgLEAVNIATNPKNRKIVTKLEQSSCPNIYAVGDVMD------GCPELTPVAI---QAGISLARRLFGGSKEPMDYVNICTTVFTPLEYSCVGLSEEDAI-EKYGEDGIEVYHSEflplewSLSQMRHDSNAFTKVVVDKrDNERILGMHYVGPN-AGEVMQGYGVSMKSGITYKQLVE 569
                567778999**********************98776..788**********************9873335788888888877******************999876424689999**************************986......5577777766...56999********99999************************99.888888888876542111113344556788999**99975899**********9.9999**************99986 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.9   2.9e+02     137     164 ..      98     133 ..      86     141 .. 0.65
   2 !   33.0   0.0   3.2e-11   4.8e-09     142     278 ..     302     437 ..     291     465 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.9
  TIGR02374 137 akrtkka........aviGgGLLGLeaaraLknlGl 164
                 +  +ka        +viGgG  G+ aa+     G 
  MMETSP1061-20121228|712_1  98 VNDGHKAdhpydydlVVIGGGSGGMAAAKEAALHGA 133
                54445555556666699*******999986655555 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 3.2e-11
  TIGR02374 142 kaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelekkGltvlleke..tveivkesvekaerlrfkDGssleadlvvlaaGirP.rdeLaaea.GlkvndrrGiivndsmqtsdPdiyavGeca 278
                k+  +G+  + Le a  L  lG dv        ++ + +D+  ++ + + ++++G++++++     +e v+++   + ++ f+DG+    d v+ a+G      +L+ ea  ++ n++   iv +  q s P+iyavG++ 
  MMETSP1061-20121228|712_1 302 KTLCVGASYISLECAGFLAGLGKDVTC--AVRSILLRGFDRECSERIGNYMKEHGVKFKMQVTptKLEKVEDD---RIKVTFSDGTDDVYDTVLAAVGRTAdTAKLGLEAvNIATNPKNRKIVTKLEQSSCPNIYAVGDVM 437
                56789**************99999876..45678889*********************996541045666666...7889******************765156899887479*****9999****************985 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0047      0.71       1      30 [.     110     139 ..     110     150 .. 0.84
   2 !   17.3   0.0   2.2e-06   0.00034     135     290 ..     291     452 ..     198     458 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0047
  TIGR01292   1 ydviiiGaGpaGltaaiYaaranlktllie 30 
                yd+++iG+G +G++aa  aa  + k++l +
  MMETSP1061-20121228|712_1 110 YDLVVIGGGSGGMAAAKEAALHGAKVALCD 139
                79**************99888888877665 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 2.2e-06
  TIGR01292 135 Dgalfknk...evavvGggdsAveealyLskiakkVtlvhrrdklra.ekillerl...kknekievllnstveeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntellkel...leldeegyivvdeemrTsveGvfaaGDvrdkslrQvvtaagdGa 290
                D  +f nk   + + vG     +e a +L+ ++k+Vt  +r   lr  ++ + er+   +k++ +++ ++ t ++++   kve+ +ik t  + +     d+v  a+G ++ t+ l  +   ++++ ++  +v +  + s + ++a+GDv+d   +   +a+  G+
  MMETSP1061-20121228|712_1 291 DDVFFLNKdpgKTLCVGASYISLECAGFLAGLGKDVTCAVRSILLRGfDRECSERIgnyMKEHGVKFKMQVTPTKLE---KVEDDRIKVTFSDGTD-DVYDTVLAAVGRTADTAKLGLEavnIATNPKNRKIVTKLEQSSCPNIYAVGDVMDGCPELTPVAIQAGI 452
                7788888866668899*************************999986345566665211556689999999999885...7777788755554444.4579*******999988765444578899999888889999*************987777777777776 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1     0.012       1.8     133     163 ..     109     139 ..      90     156 .. 0.80
   2 ?   -1.7   0.0       1.3     2e+02     357     403 ..     246     292 ..     234     301 .. 0.72
   3 !    8.4   0.0    0.0012      0.18     274     344 ..     302     375 ..     295     384 .. 0.84
   4 !    9.8   0.1   0.00044     0.067     376     429 ..     386     441 ..     368     457 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.012
  TIGR01316 133 kkkvaviGaGpaGlavaselakkGhevtvfe 163
                +  + viG G  G+a a+e a +G +v + +
  MMETSP1061-20121228|712_1 109 DYDLVVIGGGSGGMAAAKEAALHGAKVALCD 139
                566789999***********99999998765 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.3
  TIGR01316 357 rdsgekrkvpvtdeevkleadavivaiGqeankiiaedsslktskrG 403
                +ds     v   +    + a   +va+G ++ ++   ++ l++s + 
  MMETSP1061-20121228|712_1 246 KDSHTVELVDKKGVVQEITASRFLVAVGGRPSPLDCVGGDLAISSDD 292
                55555556666666777888889999999999998888888887765 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0012
  TIGR01316 274 kvvviGgGntavdaartalrlGaevhvvyrrt..redmtareeeikh.aeeeGvkfefllqpveviGdeeGevk 344
                k++ +G+ ++++++a     lG +v+++ r    r     + e i + ++e Gvkf++ + p+++   e+ ++k
  MMETSP1061-20121228|712_1 302 KTLCVGASYISLECAGFLAGLGKDVTCAVRSIllRGFDRECSERIGNyMKEHGVKFKMQVTPTKLEKVEDDRIK 375
                6889**************************8533777888999997615577**********998777776665 PP

  == domain 4    score: 9.8 bits;  conditional E-value: 0.00044
  TIGR01316 376 adavivaiGqean..kiiaedsslktskrGtivvdedletsieGvfaGGdvirGea 429
                 d+v+ a+G+ a+  k+  e  +++t+++   +v +  ++s + ++a Gdv+ G  
  MMETSP1061-20121228|712_1 386 YDTVLAAVGRTADtaKLGLEAVNIATNPKNRKIVTKLEQSSCPNIYAVGDVMDGCP 441
                59*******9875337889999******************************9965 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     1e-05    0.0016     381     409 ..     111     139 ..      95     148 .. 0.90
   2 !    7.0   0.0    0.0022      0.34     463     643 ..     264     456 ..     229     458 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1e-05
  TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtlle 409
                 ++v+GgG +G++aa++aa  G +v l++
  MMETSP1061-20121228|712_1 111 DLVVIGGGSGGMAAAKEAALHGAKVALCD 139
                579**********************9986 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0022
  TIGR03997 463 kPDavvlatGsrparpdlagadservvtvrevltgeaevggrvlvvDelGfhqatsvaellaargkkveiitsalvv.gqdLgltldlelwnrralekgielitdlvvievdga..................tvkvvhrytgeveelaevDtvvlalaqrpedelylslkdkvl.evyriGDcl..aPRrveaaileGerval 643
                +    ++a G rp++ d  g  ++  ++  +v   ++ +g++++v  +   + +   a +la  gk+v+    +++  g d   +  + ++   + e+g+++  +++ +++++                   tv +    t  +++l  ++ v +a++++ + ++ ++l++++  ++y +GD +   P     ai  G  +a+
  MMETSP1061-20121228|712_1 264 TASRFLVAVGGRPSPLDCVG--GDLAISSDDVFFLNKDPGKTLCVGAS---YISLECAGFLAGLGKDVTCAVRSILLrGFDRECSERIGNY---MKEHGVKFKMQVTPTKLEKVeddrikvtfsdgtddvydTVLAAVGRTADTAKLG-LEAVNIATNPKNR-KIVTKLEQSSCpNIYAVGDVMdgCPELTPVAIQAGISLAR 456
                5556789**********999..666779***************99544...55668899**********9776655415565555544444...456778887777777666666669999999999998776666666666666666.7777777777655.566777665544*******985558888888888877776 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.2e-07   1.9e-05     160     198 ..     102     139 ..      92     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.2e-07
  TIGR01372 160 dtydkvnahcDvLvvGaGpaGLaaAraAaraGarvilvd 198
                 ++d+ + + D++v+G+G+ G+aaA++Aa +Ga+v l+d
  MMETSP1061-20121228|712_1 102 HKADHPYDY-DLVVIGGGSGGMAAAKEAALHGAKVALCD 139
                555555544.9***************************9 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0032      0.48     144     180 ..     102     137 ..      85     142 .. 0.81
   2 !   11.7   0.0   0.00012     0.018     198     292 ..     345     440 ..     300     458 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0032
  TIGR04018 144 ykeahpyvkqkvvvvGgknsavdaalelyrkgaevtl 180
                +k  hpy + ++vv+Gg +  + aa e   +ga+v+l
  MMETSP1061-20121228|712_1 102 HKADHPY-DYDLVVIGGGSGGMAAAKEAALHGAKVAL 137
                5666777.56889999999999999999999999987 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00012
  TIGR04018 198 dlenrikegkikalfe...sevkeieeesvtletpegeveeiendfvlaltGyrpdlell..eklgveleedekipvydeetmEtnveglylaGvvaagl 292
                 + n +ke+ +k++++   ++++++e+++++++ ++g+      d vla +G ++d++ l  e+++++++ ++++ v+  +   ++ +++y +G v+ g 
  MMETSP1061-20121228|712_1 345 RIGNYMKEHGVKFKMQvtpTKLEKVEDDRIKVTFSDGTD--DVYDTVLAAVGRTADTAKLglEAVNIATNPKNRKIVT--KLEQSSCPNIYAVGDVMDGC 440
                56777788877776653347899*********9998888..55799**********9876115555555555555544..445799********999886 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.079        12     133     159 ..      96     123 ..      87     138 .. 0.72
   2 !   16.7   0.0   4.7e-06   0.00072     172     281 ..     321     437 ..     297     447 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.079
  TIGR03169 133 eellekakaseetk.slavvGgGaagvE 159
                e +++ +ka++ +  +l+v+GgG +g+ 
  MMETSP1061-20121228|712_1  96 EMVNDGHKADHPYDyDLVVIGGGSGGMA 123
                5566667777777779*********975 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 4.7e-06
  TIGR03169 172 glkaevslaseakllqalsakvrklvkrllakrgievlekeevtevede.....alllaegetleadavllatgakapaw...LaesglsldedGflavkktLqslshpevFaaGDca 281
                gl ++v+ a ++ ll+++ ++  +++ + ++++g++   + + t+ e+      +++ ++g+    d+vl+a g  a +    L++ +++++++ +  v+k  qs s p+++a+GD++
  MMETSP1061-20121228|712_1 321 GLGKDVTCAVRSILLRGFDRECSERIGNYMKEHGVKFKMQVTPTKLEKVeddriKVTFSDGTDDVYDTVLAAVGRTADTAklgLEAVNIATNPKNRKIVTKLEQS-SCPNIYAVGDVM 437
                4445678889999**********************99766655554432344777778999999********99766443234************9999987777.9*********96 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.031       4.7     519     567 ..      92     139 ..      86     192 .. 0.81
   2 !   11.3   0.0   5.9e-05    0.0089     764     820 ..     385     442 ..     350     468 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.031
  TIGR03315 519 kaydeykeklekpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfe 567
                ka+ e+ ++ +k++   +   + viG+G  G++a+   a +G +v++ +
  MMETSP1061-20121228|712_1  92 KAHPEMVNDGHKADHPYDY-DLVVIGGGSGGMAAAKEAALHGAKVALCD 139
                5556666666777766666.67788888888888888888887777765 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 5.9e-05
  TIGR03315 764 eadaviaavGeqvdtel..lkklgieldekgkvvvneetketsvtnvfviGdakkGPat 820
                  d+v+aavG+  dt    l++++i+++ k++  v +  +++s +n++ +Gd+  G   
  MMETSP1061-20121228|712_1 385 VYDTVLAAVGRTADTAKlgLEAVNIATNPKNRKIVTKL-EQSSCPNIYAVGDVMDGCPE 442
                46************987235777888887777777665.899***********998433 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.3   6.8e-06     0.001       2      55 ..     109     162 ..     108     174 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.8e-06
  TIGR01816   2 kfdvvvvGaGGaGlraalelakeglktavvtklfPtrshtvaaqGGisaalgnv 55 
                 +d vv+G+G  G+ aa e+a +g k+a    + P+   t+   GG ++ +g +
  MMETSP1061-20121228|712_1 109 DYDLVVIGGGSGGMAAAKEAALHGAKVALCDFVTPSPKGTTWGLGGTCVNVGCI 162
                69********************************************99999876 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.4   2.3e-05    0.0035       1      30 [.     110     139 ..     110     146 .. 0.96

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.3e-05
  TIGR02032   1 yDvvvvGaGpaGssaAlrlakkGlrVllle 30 
                yD+vv+G+G  G +aA ++a  G++V+l +
  MMETSP1061-20121228|712_1 110 YDLVVIGGGSGGMAAAKEAALHGAKVALCD 139
                9*************************9977 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   2.3   0.00034     0.052       2      28 ..     113     139 ..     112     142 .. 0.94
   2 ?    3.1   0.0     0.069        10     213     263 ..     345     395 ..     338     432 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00034
  TIGR03467   2 vvvGgGlAGLaAAveLaraGvrvtllE 28 
                vv+GgG  G+aAA e a +G++v l +
  MMETSP1061-20121228|712_1 113 VVIGGGSGGMAAAKEAALHGAKVALCD 139
                8**********************9975 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.069
  TIGR03467 213 paarylesrggevrlgtrvreleasaggiralve.aaeetlaadavvlAvpp 263
                 + +y++++g+++++++  ++le  ++  r++v+ +++ +  +d v  Av  
  MMETSP1061-20121228|712_1 345 RIGNYMKEHGVKFKMQVTPTKLEKVEDD-RIKVTfSDGTDDVYDTVLAAVGR 395
                56789*************9999987776.55556235555667777777654 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0015      0.22       5      25 ..     110     130 ..     108     210 .. 0.62
   2 ?   -1.9   0.0       1.3     2e+02     194     247 ..     223     277 ..     210     296 .. 0.78
   3 ?    4.9   0.0     0.012       1.8     146     203 ..     303     362 ..     282     388 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0015
  TIGR03143   5 ydlvviGgGpaglsaGiyagr 25 
                ydlvviGgG+ g++a   a+ 
  MMETSP1061-20121228|712_1 110 YDLVVIGGGSGGMAAAKEAAL 130
                9************98755543 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.3
  TIGR03143 194 ievkfnvelkevtGddvlreakfvnnatGeeteykakkdegtfGvf.vfvGyvPs 247
                ++ k++v l+e + +   + akf++ +t e +  k   +e t   f v vG  Ps
  MMETSP1061-20121228|712_1 223 LNFKYRVRLREKSVQYLNKLAKFKDSHTVELVDKKGVVQEITASRFlVAVGGRPS 277
                5679999999999999999999999999999888877777666554255666665 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.012
  TIGR03143 146 vlviGgGfaaaeeavfltkyakkvt.....vivrepdftcakaiaekvkanPkievkfnvelk 203
                 l +G+ + + e a fl+  +k vt     +++r+ d  c++ i++ +k++    vkf+++++
  MMETSP1061-20121228|712_1 303 TLCVGASYISLECAGFLAGLGKDVTcavrsILLRGFDRECSERIGNYMKEHG---VKFKMQVT 362
                689*********************9333334556778889999999999884...55555544 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   4.3e-05    0.0066       1      48 [.     111     158 ..     111     166 .. 0.90
   2 ?   -1.6   0.0      0.99   1.5e+02     206     231 ..     552     578 ..     542     592 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.3e-05
  TIGR01812   1 DvvivGaGlAGlraAveaakkglkvaviskvyptRsHsvaAqGGiaaa 48 
                D+v++G+G  G+ aA eaa +g+kva+   v p    ++   GG++  
  MMETSP1061-20121228|712_1 111 DLVVIGGGSGGMAAAKEAALHGAKVALCDFVTPSPKGTTWGLGGTCVN 158
                89***************************9999988888888887765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.99
  TIGR01812 206 dGlaialragvplkd.mEfvqfHPtgl 231
                +G++++++ g++ k+ +E v  HPt+ 
  MMETSP1061-20121228|712_1 552 QGYGVSMKSGITYKQlVETVGIHPTSS 578
                6999999*****87736********75 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.9   6.7e-05      0.01       2      28 ..     113     139 ..     112     144 .. 0.94
   2 ?   -3.7   0.0       5.8   8.8e+02      69      89 ..     240     260 ..     226     270 .. 0.74
   3 ?    1.8   0.0      0.12        18     114     161 ..     348     397 ..     343     428 .. 0.82
   4 ?   -1.8   0.0       1.5   2.2e+02     363     379 ..     422     438 ..     415     439 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.7e-05
  TIGR00275   2 iiiGgGaaGlmaAitaaeegakVlllE 28 
                ++iGgG  G+ aA +aa +gakV+l +
  MMETSP1061-20121228|712_1 113 VVIGGGSGGMAAAKEAALHGAKVALCD 139
                8***********************986 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 5.8
  TIGR00275  69 salsrFsnkdliaffeelgve 89 
                + l++F+ + ++++++++gv 
  MMETSP1061-20121228|712_1 240 NKLAKFKDSHTVELVDKKGVV 260
                568888888888888888885 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.12
  TIGR00275 114 kelkelgvevlteskvksi.kkeeekfevet.ekkeleakkvilatGgks 161
                + +ke gv++++++  +++ k e+++++v++ ++++  +++v+ a+G  +
  MMETSP1061-20121228|712_1 348 NYMKEHGVKFKMQVTPTKLeKVEDDRIKVTFsDGTDDVYDTVLAAVGRTA 397
                57899**************8889999*****6677777778877887644 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 1.5
  TIGR00275 363 mesklvkglYfaGEvlD 379
                +e   ++++Y +G v+D
  MMETSP1061-20121228|712_1 422 LEQSSCPNIYAVGDVMD 438
                677889**********9 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00014     0.022     206     240 ..     103     137 ..      88     141 .. 0.83
   2 ?   -2.1   0.0       1.5   2.3e+02     270     320 ..     343     394 ..     340     413 .. 0.76
   3 ?   -1.8   0.0       1.2   1.8e+02     460     488 ..     410     438 ..     367     451 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00014
  TIGR03140 206 aeeekekydvlvvGgGPagaaaaiyaarkGlkval 240
                ++++   yd++v+GgG  g aaa  aa  G kval
  MMETSP1061-20121228|712_1 103 KADHPYDYDLVVIGGGSGGMAAAKEAALHGAKVAL 137
                44555679************************997 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.5
  TIGR03140 270 aanleehikeynidvleeqkvkkie.teeeakevelesGevlkaksvivatG 320
                ++++ +++ke+ ++ + +++ +k+e  e++ ++v+ ++G     ++v+ a G
  MMETSP1061-20121228|712_1 343 SERIGNYMKEHGVKFKMQVTPTKLEkVEDDRIKVTFSDGTDDVYDTVLAAVG 394
                5667788888899998888888888557888999999998777777776666 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 1.2
  TIGR03140 460 elnrrGeividergrtsvkGifaaGdvtt 488
                 +n +   ++ +  + s + i+a Gdv +
  MMETSP1061-20121228|712_1 410 ATNPKNRKIVTKLEQSSCPNIYAVGDVMD 438
                44555556677778889999999999875 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   8.7e-05     0.013       1      50 [.     110     160 ..     110     191 .. 0.78
   2 ?   -1.8   0.0       1.7   2.6e+02     145     198 ..     340     398 ..     338     405 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.7e-05
  TIGR03364   1 tdvvvvGaGivGlahAlaaarrGlkVtvie.rssraaGAsvrNFGqvvvtg 50 
                +d+vv+G+G  G+a A +aa +G kV++ +  +++++G +    G +v  g
  MMETSP1061-20121228|712_1 110 YDLVVIGGGSGGMAAAKEAALHGAKVALCDfVTPSPKGTTWGLGGTCVNVG 160
                79*************************999336677777655555555555 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.7
  TIGR03364 145 reaipalaeyLaeekgveflwntavtevets.....tvrtsrGevh.aeqvlVcsgadfe 198
                re   ++ +y++e+ gv+f+++ + t++e+      +v+ s G+    ++vl  +g++ +
  MMETSP1061-20121228|712_1 340 RECSERIGNYMKEH-GVKFKMQVTPTKLEKVeddriKVTFSDGTDDvYDTVLAAVGRTAD 398
                67778899999887.999998865555544334477888899887778888888887665 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00014     0.021      21      65 ..     109     155 ..      97     165 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00014
  TIGR00292  21 esDviivGaGpsGLtaayylakeglkvvvler.klaiGGGswg.GGm 65 
                + D +++G+G+ G++aa+  a +g kv++ +    ++ G +wg GG 
  MMETSP1061-20121228|712_1 109 DYDLVVIGGGSGGMAAAKEAALHGAKVALCDFvTPSPKGTTWGlGGT 155
                5799*************************996145788888873554 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00027     0.041       1      52 [.     110     160 ..     110     172 .. 0.84
   2 ?   -1.0   0.0      0.85   1.3e+02     233     299 ..     344     411 ..     337     433 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00027
  TIGR02730   1 ydaivigsgigglvtatqlaakgakvlvlekylipggsagyferegykfdvg 52 
                yd +vig g gg+ +a + a +gakv  l  ++ p   +  +   g   +vg
  MMETSP1061-20121228|712_1 110 YDLVVIGGGSGGMAAAKEAALHGAKVA-LCDFVTPSPKGTTWGLGGTCVNVG 160
                9************************96.667888887777777777666666 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.85
  TIGR02730 233 eklvkglekaggkirykarvtkiilendkavgvkladgekirakrivsnatrw.dtfgkllkeenlpk 299
                e++ + ++++g k + +   tk+ + +d  + v ++dg      ++++   r  dt +  l++ n+ +
  MMETSP1061-20121228|712_1 344 ERIGNYMKEHGVKFKMQVTPTKLEKVEDDRIKVTFSDGTDDVYDTVLAAVGRTaDTAKLGLEAVNIAT 411
                566667889999999999999999999999********988778888877775255553344444433 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.2   0.00046      0.07       1      42 [.     111     152 ..     111     155 .. 0.95

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00046
  TIGR01790   1 DliviGgGlAglaiAlelakpglrvqlieaapklpfnntygv 42 
                Dl+viGgG  g+a A e a  g +v l + + + p   t+g+
  MMETSP1061-20121228|712_1 111 DLVVIGGGSGGMAAAKEAALHGAKVALCDFVTPSPKGTTWGL 152
                9****************************9999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                        27  (0.00658216); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.70u 0.16s 00:00:00.86 Elapsed: 00:00:00.45
# Mc/sec: 1756.92
//
Query:       MMETSP1061-20121228|709_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-77  256.3   0.6    9.7e-77  256.2   0.4    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    3.7e-46  155.7   0.1    4.1e-46  155.6   0.1    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.2   0.4   4.7e-80   9.7e-77      48     252 ..       1     200 []       1     200 [] 0.96

  Alignments for each domain:
  == domain 1    score: 256.2 bits;  conditional E-value: 4.7e-80
  TIGR01534  48 svhGrfeeevtvsekkallvngkkvivlaserdpkdlpwkelgvdlvlectGafldkekalekhleagakkVllsaPskdeaaitlVygvNeeeldeseekiiSaASCTTnclapllkvleeefgiksglmtTvHayTadQkllDavhakdlrraRaaaeniiptstgaakavakvlpelagkltgeavRvPtpdvSlvdlvlnl 252
                ++hG+ +++v+++ +  l+++gk ++++++ rdpk++ w +lg+d+v e+tG+fl+keka +  ++ gakkV+ saP+kd+  +t+V+gvNee +d  +e+ iS+ASCTTn lap++k++++ef i+++lmtTvHa+Ta+Q ++D+ ++kd+r +Raa+ niip+stgaakav+kv+p+l gkltg+a+RvPt dvS+vdl+++l
  MMETSP1061-20121228|709_1   1 TIHGKAKQTVEIDGD-FLVLDGK-KVQTSRCRDPKEVGWGALGADYVCESTGVFLTKEKA-QSIIDGGAKKVIYSAPAKDD-SQTIVMGVNEEMYDG-SEDFISCASCTTNGLAPMVKAIHDEFVIEEALMTTVHAMTATQAVVDSSSRKDWRGGRAASGNIIPSSTGAAKAVTKVIPSLVGKLTGMAFRVPTIDVSVVDLTCKL 200
                68*********9998.7999995.7778889************************88886.9*****************96.66************6.9*******************************************************************************************************975 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.1     2e-49   4.1e-46      49     246 ..       1     198 [.       1     200 [] 0.97

  Alignments for each domain:
  == domain 1    score: 155.6 bits;  conditional E-value: 2e-49
  TIGR01532  49 tshgrfakevkvdrdqlyvnddairvlreselealdwrelgvdlvldctgvygsredgerfiaagakkvlfshpgaadldativygvnqedlsaeekivsnascttncivplikllddaigiesgtittihsamndqqvidayhn.dlrrtraasqsiipvdtklakgierllpkladrleaiavrvptvnvtaldlsv 246
                t hg+  + v+ d+d l +++  ++  r ++++ + w +lg d v + tgv+ ++e+++  i+ gakkv++s p+  d  +tiv gvn+e   + e ++s ascttn   p++k ++d + ie + +tt+h+    q v+d+  + d r  raas  iip +t+ ak +++++p l ++l  +a rvpt++v+ +dl+ 
  MMETSP1061-20121228|709_1   1 TIHGKAKQTVEIDGDFLVLDGKKVQTSRCRDPKEVGWGALGADYVCESTGVFLTKEKAQSIIDGGAKKVIYSAPAKDD-SQTIVMGVNEEMYDGSEDFISCASCTTNGLAPMVKAIHDEFVIEEALMTTVHAMTATQAVVDSSSRkDWRGGRAASGNIIPSSTGAAKAVTKVIPSLVGKLTGMAFRVPTIDVSVVDLTC 198
                57************************************************************************7666.78************************************************************98766***************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 910.27
//
Query:       MMETSP1061-20121228|724_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 1508.45
//
Query:       MMETSP1061-20121228|728_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       352  (0.0858118); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1916.12
//
Query:       MMETSP1061-20121228|727_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0003   18.6   0.0    0.00051   17.9   0.0    1.3  1  TIGR00586 mutt: mutator mutT protein
     0.0026   15.2   0.0     0.0044   14.4   0.0    1.3  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.5e-07   0.00051       7      69 ..     239     300 ..     235     352 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.5e-07
  TIGR00586   7 iavg.iirnenneifitrraadadlanklefPGGkieaGetpeqavvrelqeevgitaqhfelf 69 
                ++vg ++ n  +ei+  r +  +   + +  P G  + Ge    a  re+ ee gita+  +++
  MMETSP1061-20121228|727_1 239 VGVGaVVVNSRDEILCIRELRRNY--HPWKIPTGLADLGESIHSAAEREVLEETGITATCHSIL 300
                555438899999999998877654..6799***************************9877655 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.2e-06    0.0044      48      76 ..     266     294 ..     233     306 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.2e-06
  TIGR02705  48 efPGGkveegetskeaaiRevleetGaiv 76 
                  P G  + ge+ + aa RevleetG ++
  MMETSP1061-20121228|727_1 266 KIPTGLADLGESIHSAAEREVLEETGITA 294
                5899**********************654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 2249.31
//
Query:       MMETSP1061-20121228|732_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 389.97
//
Query:       MMETSP1061-20121228|733_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 861.07
//
Query:       MMETSP1061-20121228|735_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 617.95
//
Query:       MMETSP1061-20121228|734_1  [L=1030]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1030 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.20s 00:00:00.68 Elapsed: 00:00:00.50
# Mc/sec: 2718.98
//
Query:       MMETSP1061-20121228|744_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|747_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 494.96
//
Query:       MMETSP1061-20121228|750_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1061.19
//
Query:       MMETSP1061-20121228|741_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.22s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1331.89
//
Query:       MMETSP1061-20121228|748_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35    9.2   8.2       0.79    8.1   0.3    2.2  2  TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding domain


Domain annotation for each model (and alignments):
>> TIGR04085  rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.3   0.00019      0.79      67      86 ..       9      28 ..       7      36 .. 0.78
   2 ?    5.3   1.4    0.0014       5.7      49      71 ..      59      84 ..      33      99 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00019
  TIGR04085 67 lplCgGgCpaealeeegdle 86
               + +C+G+C++++l++  +++
  MMETSP1061-20121228|748_1  9 RTYCAGKCKKHSLHKVTQYK 28
               679*********99855554 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0014
  TIGR04085 49 elkke.kk.lekeeCkkCkal.plCg 71
               ++ k+ +k  ++ eCkkCk + +lC+
  MMETSP1061-20121228|748_1 59 KKAKTtRKiVLRLECKKCKTKkQLCH 84
               2222212247899*****98624675 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 647.38
//
Query:       MMETSP1061-20121228|751_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1141.99
//
Query:       MMETSP1061-20121228|754_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   32.1   0.6      0.026   12.2   0.0    4.0  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   6.2e-06     0.026       1      22 [.       4      24 ..       4      27 .. 0.91
   2 !    8.7   0.0   7.7e-05      0.32       1      25 [.      29      52 ..      29      53 .. 0.92
   3 !    5.5   0.5   0.00078       3.2       2      17 ..      55      69 ..      55      74 .. 0.97
   4 ?    0.5   0.1     0.028   1.1e+02       1       9 [.      79      87 ..      79      88 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.2e-06
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVT 22
               +F++ +s+++ ++ +++T +V 
  MMETSP1061-20121228|754_1  4 LFREAKSFNQ-PIGSWNTQKVS 24
               59********.*******9995 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 7.7e-05
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
               +F+g s++++ ++ ++ T++V  M+
  MMETSP1061-20121228|754_1 29 VFQGASAFNQ-PIGSWSTGKVHYMD 52
               5*********.**********8885 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.00078
  TIGR02167  2 FsgCssLtsLDlSnfd 17
               F+g ss+++ ++++++
  MMETSP1061-20121228|754_1 55 FQGASSFNQ-PIESWN 69
               99*******.*****9 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.028
  TIGR02167  1 MFsgCssLt 9 
               MF++ s+++
  MMETSP1061-20121228|754_1 79 MFMDASAFN 87
               9**999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.07u 0.17s 00:00:00.24 Elapsed: 00:00:00.37
# Mc/sec: 321.05
//
Query:       MMETSP1061-20121228|752_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.24s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 2908.02
//
Query:       MMETSP1061-20121228|762_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|759_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-15   51.8   0.0    8.6e-15   51.3   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.7e-14   51.0   0.1    3.5e-14   50.0   0.0    1.6  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    1.5e-11   41.5   0.1    1.7e-07   28.2   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    8.9e-11   39.0   0.0    3.2e-10   37.2   0.0    1.8  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    4.4e-10   37.0   0.1    4.4e-10   37.0   0.0    2.0  3  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    1.2e-07   28.2   0.0    1.2e-07   28.2   0.0    2.2  3  TIGR00631 uvrb: excinuclease ABC subunit B
    4.3e-06   23.1   2.3    1.3e-05   21.5   0.0    2.1  2  TIGR00580 mfd: transcription-repair coupling factor
    0.00083   15.8   0.0     0.0031   14.0   0.0    1.9  2  TIGR00595 priA: primosomal protein N'
      0.002   14.3   0.0       0.26    7.3   0.0    2.2  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
  ------ inclusion threshold ------
      0.052   10.6   7.1      0.079   10.0   4.9    1.2  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   2.1e-17   8.6e-15      18     372 ..     108     452 ..     100     473 .. 0.77

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 2.1e-17
  TIGR04121  18 Qkevleaaeeg..esglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATv.gnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGsp..k....gvaRllQRiGRsnHrldepskillv.ptnalEllEaaaarea 372
                Q+e+l ++ ++  ++ + +a  G+GKT a  l++l +++   ++  + ++l +tP + La +i +   +p+++    ++++l    ts ++ +      +++++ Tp ++   l ++  ++  k++++ v+DE  +++g+      +L +   ++l+ + + +  sAT  +++ ++ae ++++++   + l++++e+  l+v++ l    ++  + G   l+ l+++++ ++   +++vF+ t++ a++++++L++       + ++ Hg ++++ R+     +++g+  ++++T  L  GvD  +v lvi+   p  k         l RiGR++   ++ + i l+  t ++E+l a   + a
  MMETSP1061-20121228|759_1 108 QEEALPRILSDppRNLIGQAQSGSGKTAAFTLGMLYRIE--INDPPTTQALCVTPTRELAIQIFEKAVRPMAANMAGLKIQLAIAGTSIDKGT---GVNAHMVIGTPGKVVDWLKRRIINS--KTIKVFVLDEADNMVGEDGHRANSLLI--KKTLTRKCQCLLFSATFpAEVVKFAEKIIHNAD---KILIESDEALVLDVIKQLWI--DTRQYEGG-KLEFLSDIYSLLTIG-QSVVFVSTKKNADMVHKTLTDGGY----TCSVLHGGIEADDRDSTMLSFRNGESNVLITTNVLARGVDVDNVCLVINYDVPvtKdgdpDFETYLHRIGRTGRFGKKGTAINLIdDTRSVEVLAAIESHFA 452
                555555555442133444899*****************9..5555679***************988888888888889999998889887655...5567889******999998877765..899************987544445544..4789999*********85677888888888777...89999977666666666665..77788886.58999****998765.578***************987655....5999********************************************97666224222246789******9988777777877734788888755433333 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.63   2.6e+02     237     257 ..      43      63 ..      12     105 .. 0.50
   2 !   50.0   0.0   8.4e-17   3.5e-14     225     342 ..     326     449 ..     208     468 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.63
  TIGR01389 237 veelaeaLeskgiealaYhaG 257
                 eel+++L++  +e  + h+G
  MMETSP1061-20121228|759_1  43 SEELTKRLQKLALERQKQHSG 63 
                233333333333333333333 PP

  == domain 2    score: 50.0 bits;  conditional E-value: 8.4e-17
  TIGR01389 225 ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPk......nlesyyqeaGRaGRDGlkaeaillyseaDlallkrliee 342
                   +++ s++k+ + ++++L+  g++    h+G++ + R+ +  +F + + +v++ t+    G+d  +v  vi +d+P       + e+y    GR GR G+k  ai l + +  +     ie+
  MMETSP1061-20121228|759_1 326 GQSVVFVSTKKNADMVHKTLTDGGYTCSVLHGGIEADDRDSTMLSFRNGESNVLITTNVLARGVDVDNVCLVINYDVPVtkdgdpDFETYLHRIGRTGRFGKKGTAINLIDDTRSVEVLAAIES 449
                4569**************************************************************************533444479*******************988876555444445555 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   4.9e-05      0.02     234     324 ..      97     194 ..       5     267 .. 0.61
   2 !   28.2   0.0   4.1e-10   1.7e-07     472     531 ..     341     398 ..     319     430 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.9e-05
  TIGR00643 234 felTeaQkravke.ileDlksdvpmnRLlqGdVGsGKTvVavlallavies....GyqvalmaPTeiLAeQhyeklrellepl..gievalLtgslkk 324
                f +  +  +a++e  l  + sd p n + q + GsGKT   +l +l  ie       q++ + PT  LA Q +ek+++ ++    g++++l  + +  
  MMETSP1061-20121228|759_1  97 FGMGFDRPSAIQEeALPRILSDPPRNLIGQAQSGSGKTAAFTLGMLYRIEIndppTTQALCVTPTRELAIQIFEKAVRPMAANmaGLKIQLAIAGTSI 194
                444555555555413333556666666678899*************999852222589999*************998866542234444444443333 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 4.1e-10
  TIGR00643 472 lleelkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmv 531
                ++++l++  + +++ +lhg +++d++++ + +Fr++e ++L++T+v+  Gvdv n+ +++
  MMETSP1061-20121228|759_1 341 VHKTLTD--GGYTCSVLHGGIEADDRDSTMLSFRNGESNVLITTNVLARGVDVDNVCLVI 398
                3333332..789*****************************************9987665 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.4   1.6e+02     236     262 ..      40      66 ..      36     107 .. 0.57
   2 !   37.2   0.0   7.8e-13   3.2e-10     213     330 ..     316     435 ..     304     462 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.4
  TIGR00614 236 rkkveqvaaeLqkkglaaaaYhaglee 262
                ++++e+++++Lqk+ l+ +  h+g   
  MMETSP1061-20121228|759_1  40 KEDSEELTKRLQKLALERQKQHSGERL 66 
                567889999999999998888887432 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 7.8e-13
  TIGR00614 213 ledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslp..k....siesYYqesGRaGRDglksecvlfy 330
                l+d+  +++    g+s +++  ++k+++ v ++L+  g ++   h g+e ++r++    f + e +v++ t     G++  +v  vi y++p  k    + e+Y   +GR GR g k +++ + 
  MMETSP1061-20121228|759_1 316 LSDIYSLLT---IGQS-VVFVSTKKNADMVHKTLTDGGYTCSVLHGGIEADDRDSTMLSFRNGESNVLITTNVLARGVDVDNVCLVINYDVPvtKdgdpDFETYLHRIGRTGRFGKKGTAINLI 435
                555555555...6888.9************************************************************************99542444479**************999988664 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.2       1.9   7.9e+02      67      84 ..      35      52 ..      13      73 .. 0.51
   2 ?   -2.0   0.0       0.8   3.3e+02       5      51 ..     126     174 ..     123     189 .. 0.70
   3 !   37.0   0.0   1.1e-12   4.4e-10     127     324 ..     228     430 ..     211     458 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.9
  TIGR01587 67 rkikekgdseeleklvkl 84
                + k+k+dseel k +++
  MMETSP1061-20121228|759_1 35 EAKKKKEDSEELTKRLQK 52
               233344444444433332 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.8
  TIGR01587   5 eAPtGyGKteaallwalk..likkqkadkvifalPtratanamyerlke 51 
                +A  G+GKt a  l  l+  +i+     + + + Ptr +a  + e++  
  MMETSP1061-20121228|759_1 126 QAQSGSGKTAAFTLGMLYriEINDPPTTQALCVTPTRELAIQIFEKAVR 174
                67889***97655444443446777788888888888888777777655 PP

  == domain 3    score: 37.0 bits;  conditional E-value: 1.1e-12
  TIGR01587 127 vliiDEvhayeeytkal.llallevlkdvdvkillmsAtlpkllkeylekielveenealdlke...ekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis.......vdvlitelapid..sLiQRlGRlaRygrkir 324
                v ++DE++ +  +       +l++     + ++ll sAt+p  + +++eki    ++ + + +e    + + +q  + + +   +++++l ++  +l   ++ +++v t ++A  + + l + + +    +lH+     dr       + ++++ e+ v+++T v   ++D++        dv +t    +d      R+GR  R+g+k  
  MMETSP1061-20121228|759_1 228 VFVLDEADNMVGEDGHRaNSLLIKKTLTRKCQCLLFSATFPAEVVKFAEKIIHNADKILIESDEalvLDVI-KQLWIDTRQYEGGKLEFLSDI-YSLLTIGQSVVFVSTKKNADMVHKTLTDGGYT--CSVLHGGIEADDRDST----MLSFRNGESNVLITTNVLARGVDVDnvclvinYDVPVTKDGDPDfeTYLHRIGRTGRFGKKGT 430
                5789999877665555524556667779999******************************9997544444.444444555667899999965.55667788899*****************9998..99***********877....99*********************9832222223555565555442256788888888888755 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.7   3.5       2.6   1.1e+03     607     640 ..      22      55 ..       3      73 .. 0.41
   2 ?   -3.2   0.0      0.94   3.8e+02      13      70 ..     102     168 ..      95     172 .. 0.57
   3 !   28.2   0.0   2.8e-10   1.2e-07     445     548 ..     327     432 ..     298     462 .. 0.80

  Alignments for each domain:
  == domain 1    score: -4.7 bits;  conditional E-value: 2.6
  TIGR00631 607 kkkkkaaeeaeklsekelkklikklekemkeaak 640
                +++k+a+ e+++ ++k+ k+  ++l+k++++ a 
  MMETSP1061-20121228|759_1  22 TEEKTATDETNNAEAKKKKEDSEELTKRLQKLAL 55 
                1111111222223333333333444444444333 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.94
  TIGR00631  13 Dqpkaiek..lvesleagekeqvLlGvtGsGkt..ftianv..iakvqkP...tlvlahnktLaaqL 70 
                D+p+ai++  l + l++  ++ +     GsGkt  ft+  +  i+  + P   +l +++ + La q+
  MMETSP1061-20121228|759_1 102 DRPSAIQEeaLPRILSDPPRNLIGQAQSGSGKTaaFTLGMLyrIEINDPPttqALCVTPTRELAIQI 168
                7788886422666667766666666678999983344444421333333322235566666666665 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 2.8e-10
  TIGR00631 445 rvlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDa..dkeGflrsersLiqtiGraarn.veGkvi 548
                + +v + tkk a+ + + l++ g     lh  i++ +r + + ++r+ge +vl+  n+L  G+D+ +v lv   D    k+G    e+  +  iGr  r   +G++i
  MMETSP1061-20121228|759_1 327 QSVVFVSTKKNADMVHKTLTDGGYTCSVLHGGIEADDRDSTMLSFRNGESNVLITTNVLARGVDVDNVCLVINYDVpvTKDGDPDFET-YLHRIGRTGRFgKKGTAI 432
                4568889****************************************************************99996225777665555.446678887752456555 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   1.0     0.091        38     148     217 ..      13      84 ..       1     115 [. 0.47
   2 !   21.5   0.0   3.2e-08   1.3e-05     688     733 ..     353     398 ..     340     446 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.091
  TIGR00580 148 elereleefleaaleakklisae..rlsleveelvleakalslsevelesalslkaseaieaaqeaeraela 217
                ++e+  + ++e+++++ ++ +ae  +++ + eel+ + ++l l++++++s   lk++++   ++ +  ++++
  MMETSP1061-20121228|759_1  13 KTEDAAAAATEEKTATDETNNAEakKKKEDSEELTKRLQKLALERQKQHSGERLKVIQNDASSHLTGAKTFQ 84 
                333333333333333333322222244445555554555555555555555555555444444333333333 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 3.2e-08
  TIGR00580 688 aiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTii 733
                 + Hg +e+++ +++ml+F ++e++vL++T ++  G+d+ n+  +i
  MMETSP1061-20121228|759_1 353 SVLHGGIEADDRDSTMLSFRNGESNVLITTNVLARGVDVDNVCLVI 398
                699*************************************997665 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.33   1.4e+02       7      61 ..     130     188 ..     126     267 .. 0.64
   2 !   14.0   0.0   7.5e-06    0.0031     305     378 ..     365     432 ..     358     465 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.33
  TIGR00595   7 GSGKtEvy....lkviekvlakgksvlvLvPEiaLtaqllkrlkerfgsevavlhskls 61 
                GSGKt  +    l  ie       ++l + P   L++q+ ++  + + +++a l+ +l+
  MMETSP1061-20121228|759_1 130 GSGKTAAFtlgmLYRIEINDPPTTQALCVTPTRELAIQIFEKAVRPMAANMAGLKIQLA 188
                77777776322233344444445677777777777777777766666666665555554 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 7.5e-06
  TIGR00595 305 ealleqfaagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpdfRaaErtfqlltqvaGRagRaekpgevl 378
                ++++ +f++g+ ++li t ++a+G+d ++v lv  ++ D  ++      ++  f+++    GR+gR+ k+g+ +
  MMETSP1061-20121228|759_1 365 DSTMLSFRNGESNVLITTNVLARGVDVDNVCLV--INYDVPVTK----DGDPDFETYLHRIGRTGRFGKKGTAI 432
                667889************************985..788876654....46677777777779999999998765 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0033       1.3      58      96 ..     127     167 ..      88     219 .. 0.83
   2 !    7.3   0.0   0.00063      0.26     305     380 ..     351     432 ..     324     442 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0033
  TIGR03817  58 tgtasGkslayllPvlsalaed..pratalylaPtkalaad 96 
                +   sGk+ a+ l +l +++ +  p ++al ++Pt+ la  
  MMETSP1061-20121228|759_1 127 AQSGSGKTAAFTLGMLYRIEINdpPTTQALCVTPTRELAIQ 167
                5578************99876556899***********975 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00063
  TIGR03817 305 rvaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtv......aslwqqaGraGrrgqdalvv 380
                  +   +G  a+dr     ++++Ge   + +tn l  Gvd+  +  v+    P t+       ++  ++Gr+Gr g++  ++
  MMETSP1061-20121228|759_1 351 TCSVLHGGIEADDRDSTMLSFRNGESNVLITTNVLARGVDVDNVCLVINYDVPVTKdgdpdfETYLHRIGRTGRFGKKGTAI 432
                4455678888999999999***********************99999999999886222222578899******99987766 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.9   0.00019     0.079     135     209 ..       6      88 ..       1      93 [. 0.60

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00019
  TIGR01347 135 kktgrvtk.ediv.kkeekkasaakeaaakaakaaena..atrseeRvkmtRlrqriaerLleaknstam.Lt...tFnevdm 209
                k+t++  k ed++ +++e+k++++++ +a+a+k++e+    t++ ++  + R +q+  erL+  +n +++ Lt   tF+e+++
  MMETSP1061-20121228|759_1   6 KTTEETPKtEDAAaAATEEKTATDETNNAEAKKKKEDSeeLTKRLQKLALERQKQHSGERLKVIQNDASShLTgakTFQELNL 88 
                3333333334444044444444444444333333332233678888899**************99987643766668999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.54
# Mc/sec: 1161.02
//
Query:       MMETSP1061-20121228|761_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 830.25
//
Query:       MMETSP1061-20121228|764_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-09   33.5   0.0    2.8e-09   33.2   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.5e-05   20.8   0.0    7.5e-05   20.1   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   1.3e-12   2.8e-09       6     181 ..     146     319 ..     141     344 .. 0.69

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.3e-12
  TIGR03903   6 vaikllRedaaeeerlvaRFrReialCarLshPnivaLl......DsGeae..dgllFavFeyveGrtlrevLaa.dGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRge.pvtaksDlYaWGLivle 181
                va+k + +++ ee+       Re++l + L+hPn+v L       ++Ge +  +  +F vFey e   l  vL + +  L+  +      q L ++   h++ v+hRDLk  n+++  +++    k+ D+G++      +  + ++lt   + + +  Y  Pe L g     +k D+++ G iv e
  MMETSP1061-20121228|764_1 146 VALKRINTEQ-EENGFPITALREVKLLKGLKHPNMVTLKeivcsnEQGENGslPKNVFMVFEYLEY-DLTGVLETpEIRLSQDHIKSWSRQLLQGVHYMHKNMVIHRDLKASNLLINRKGE---LKIADWGLARSW---KS-EMKRLT---NKVITLWYRPPELLLGMiDYSTKIDMWSVGCIVAE 319
                5555555552.33333344569**************99522233345665433679********95.68889987367899999999*****************************99886...567799986422...11.223333...33444556666666664134556666666666666 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.6e-08   7.5e-05      94     141 ..     230     278 ..     198     290 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.6e-08
  TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkske 141
                +  +++ + v  +Hk+ ++h Dl  sN+++ ++++l + D GL++  k+
  MMETSP1061-20121228|764_1 230 SWSRQLLQGVHYMHKNMVIHRDLKASNLLInRKGELKIADWGLARSWKS 278
                566777778999****************995589999*******97544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2248.53
//
Query:       MMETSP1061-20121228|766_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-21   73.7   0.2    4.7e-21   73.2   0.1    1.3  1  TIGR03044 PS_II_psb27: photosystem II protein Psb27
    8.4e-06   23.8   4.3    0.00011   20.3   0.2    2.4  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
  ------ inclusion threshold ------
      0.012   13.8   0.4      0.012   13.8   0.2    2.3  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
       0.03   10.4   0.0      0.036   10.2   0.0    1.1  1  TIGR02214 spoVD_pbp: stage V sporulation protein D


Domain annotation for each model (and alignments):
>> TIGR03044  PS_II_psb27: photosystem II protein Psb27
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.1   4.5e-24   4.7e-21      28     135 .]      71     179 ..      49     179 .. 0.93

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 4.5e-24
  TIGR03044  28 aakasltGdyaeDtlaviktlreaielpedaenkeeaqaearelindyisrYrrrskvnklssFtTmqTalnslaghYksya.nRPlpeklkeRlekelkkaekavkre 135
                 ++  lt +y eD+  v + + +a +l + a   ee  ++ ++ + d++s Yrr +k+ +  sF T+ T +n laghY+sy+ + Plpek ++Rl +e++++ k++kr+
  MMETSP1061-20121228|766_1  71 PEDWGLTLKYEEDAAKVREHMYTATTLGKGADRMEEYGKNMKKEMIDFVSYYRRFPKIAGKPSFSTLYTSINVLAGHYTSYGyKYPLPEKRRKRLYQEYSEIAKSLKRG 179
                56778999*************************************************************************8356*********************996 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.4    0.0094       9.6      10      20 ..       9      19 ..       3      26 .. 0.59
   2 !   20.3   0.2   1.1e-07   0.00011       3      29 .]      33      57 ..      33      57 .. 0.96

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0094
  TIGR01409 10 aaaagaaaglg 20
               aaa++aa+g++
  MMETSP1061-20121228|766_1  9 AAATVAAVGAF 19
               34555555543 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 1.1e-07
  TIGR01409  3 RRdFLkaaaaagaaaglglllpsparA 29
               RRdFLk +aa++a+ +l  ++p++a+A
  MMETSP1061-20121228|766_1 33 RRDFLKNTAAVVAGSTL--MMPQVASA 57
               9****************..9*****98 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.6      0.18   1.8e+02      14      27 ..       6      19 ..       3      30 .. 0.64
   2 ?   13.8   0.2   1.2e-05     0.012       5      41 ..      27      61 ..      23      68 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.18
  TIGR02811 14 LLkglavgaaagav 27
               LL ++a++aa ga 
  MMETSP1061-20121228|766_1  6 LLIAAATVAAVGAF 19
               66666666666654 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.2e-05
  TIGR02811  5 qkadlsRRdLLkglavgaaagavaaatgrvasasaaa 41
               + + ++RRd+Lk+ a+  + ++ ++  ++vasa + +
  MMETSP1061-20121228|766_1 27 ESPATARRDFLKNTAA--VVAGSTLMMPQVASAVVEV 61
               567799******9765..4555566778888886655 PP

>> TIGR02214  spoVD_pbp: stage V sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   3.5e-05     0.036     411     479 ..      34     102 ..       4     109 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.5e-05
  TIGR02214 411 iqlvtavnavanGGklikPhivkelldkennvvvkkfepkvkrkvvdketteklrealekvvskGsgkd 479
                  +++  +av+ G +l+ P+++  ++++ ++v   +f +     +  +e ++k+re + +  + G g d
  MMETSP1061-20121228|766_1  34 RDFLKNTAAVVAGSTLMMPQVASAVVEVPDQVTAYTFPEDWGLTLKYEEDAAKVREHMYTATTLGKGAD 102
                4688999***********************888888888888888899999***999988777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 913.77
//
Query:       MMETSP1061-20121228|769_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.6    1.6  97.9         11    1.2  67.9    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2  67.9    0.0027        11     710     943 ..      22     266 ..       5     270 .] 0.56

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.0027
  TIGR00927 710 eeskdeeepaklpevtvtpapapedkgdqee.dpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeae..qegeseeka.eeeseGeieaerkgedegegeieakeaevkGeeeee...eveaeeeteaeGdedegeieaeeeGeekededegeieak..eevevegdedeteieaeeeae...vkededeGeieaeedgevkGd.egeeqkveaeeeeeedekdegeedeeeiaddeevkd 943
                +   +e e +  p+v+ tp  + +  +d    +  ++ +++ a+++ + t +e+ea+t ae+e + +  g++   +eg++ee a ee+ e    ae+ g +e+  e+ ++e+e +Geee+    + e+++e+e+eGde+  e   ee  +e e e+e+e+ ++  ee+  eg+  e+e ea eea+   ++e+e eGe ea+e+++ +G+ eg+e++ e+e +ee++++ e ++dee  +++e  ++
  MMETSP1061-20121228|769_1  22 ARVLEESEKTTAPSVAGTPDGTSDGTSDGTSaETQAETQKETAKETVKATVKETEATTSAESEPGSKILGDKSgeEEGDEEESAtEEDAEKVAAAEEDGAQEEANEATSDEGEPEGEEEATeeaNAETSDEGEPEGDEEATEEANEEATNEGEPEGEEEATGEanEETTNEGEP-EGEEEATEEANeeiTNEGEPEGEEEANEETNNEGEpEGDEEAIEEEATEEANNEGEPDGDEEANDEGE-PEG 266
                344566677778888888888887777655413344455566777778888888888889998888766655432444455555144445555678888888888999999999999876532234556777888877655544444444444444444444321333334442.34444433332112457778888888888888887344555566666666666555555555443333.222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 1018.20
//
Query:       MMETSP1061-20121228|772_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14   10.3   8.0       0.21    9.7   5.5    1.3  1  TIGR02926 AhaH: ATP synthase archaeal, H subunit


Domain annotation for each model (and alignments):
>> TIGR02926  AhaH: ATP synthase archaeal, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   5.5   5.1e-05      0.21       2      66 ..      97     163 ..      96     176 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 5.1e-05
  TIGR02926   2 eeikkAEek..aeelieeAkeerkqriaeAreeAkelleeaeeeAeklkeeileeaeeeiekEaekI 66 
                 +ikkA e+   +++ ++Ak e+k++    +e++ ell+ a ++ e++  +++++a++++ + +   
  MMETSP1061-20121228|772_1  97 DTIKKAREQrfFDNRMQDAKAEKKKQARVEIEKSIELLAPAVANREQVMRNVIDSARQRVAARKRSA 163
                5899998874469**********************************************98877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 973.42
//
Query:       MMETSP1061-20121228|777_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 911.92
//
Query:       MMETSP1061-20121228|780_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 565.67
//
Query:       MMETSP1061-20121228|778_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0068   14.2   0.2        1.9    6.2   0.0    2.2  2  TIGR03351 PhnX-like: phosphonatase-like hydrolase


Domain annotation for each model (and alignments):
>> TIGR03351  PhnX-like: phosphonatase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0   0.00047       1.9      36      93 ..     106     161 ..      94     164 .. 0.80
   2 !    5.7   0.2   0.00068       2.8      38     101 ..     243     311 ..     213     316 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00047
  TIGR03351  36 eeevqeatmGkdKieairallaadgadeekvqaifaeFeerlaelyddaevvalpGve 93 
                 ++  +   G++K++++ ++l++   +  kv a f++F  +l++ y d ++  +p   
  MMETSP1061-20121228|778_1 106 GADSMDDASGNKKKTVLVNMLNP--DQAMKVVASFKKFSSKLDDRYMDIRCCMVPSSP 161
                455555599************86..56678899999**********999999888665 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00068
  TIGR03351  38 evqeatmGkdKieairallaadgadee.....kvqaifaeFeerlaelyddaevvalpGveeairdLrs 101
                + +     +dK++a     +a  ade+     +v  ++++F+++l++   +++++ ++ v+  +r+Lr 
  MMETSP1061-20121228|778_1 243 DSKPKLLDADKVAAAAGGAGAYDADEDplnapQVLEAVKAFRRKLDQTHGSQKTQRMEMVAKKLRELRP 311
                444446667777777776666667776222224556899****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1431.35
//
Query:       MMETSP1061-20121228|786_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 546.81
//
Query:       MMETSP1061-20121228|783_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1995.55
//
Query:       MMETSP1061-20121228|789_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 940.42
//
Query:       MMETSP1061-20121228|788_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          3    4.8   7.4        2.8    4.9   5.1    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.1   0.00069       2.8      81     115 ..      53      88 ..      24      91 .] 0.73

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00069
  TIGR00601  81 kakaaePaatpesaptptp.satpasvaekksaaPa 115
                ++++ +P+++p++ap+p+p +a+ +++++ + + P+
  MMETSP1061-20121228|788_1  53 RTATPAPSPSPSTAPSPSPsTAPSTVPSTMPLTVPS 88 
                357778888899999999944444455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|793_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         7  (0.00170648); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 487.79
//
Query:       MMETSP1061-20121228|791_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-208  691.7   0.0   1.4e-208  691.4   0.0    1.0  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
      6e-78  260.4   0.0    5.8e-51  171.4   0.0    2.0  2  TIGR02731 phytoene_desat: phytoene desaturase
    1.1e-49  167.7   0.0    2.4e-31  107.3   0.0    2.1  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    4.1e-08   30.2   0.0    1.4e-07   28.4   0.2    1.6  2  TIGR02734 crtI_fam: phytoene desaturase
    1.8e-05   21.1   0.2      3e-05   20.4   0.2    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    4.2e-05   20.4   0.1    7.1e-05   19.7   0.1    1.3  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    4.5e-05   20.2   0.0    7.7e-05   19.5   0.0    1.3  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
      7e-05   19.9   0.1     0.0001   19.3   0.1    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    8.8e-05   19.3   0.1    0.00015   18.5   0.1    1.3  1  TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase
    0.00011   19.0   0.2    0.00042   17.1   0.3    1.7  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0004   17.3   0.1    0.00062   16.6   0.1    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    0.00045   17.8   3.1     0.0021   15.6   0.3    2.1  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00076   14.8   0.0     0.0011   14.2   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00076   16.5   0.2     0.0013   15.8   0.2    1.3  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    0.00082   16.0   0.0     0.0036   13.8   0.0    1.9  3  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0016   14.9   0.1     0.0031   14.0   0.1    1.4  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
     0.0025   14.3   0.0     0.0039   13.6   0.0    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0053   12.4   0.1     0.0093   11.6   0.1    1.3  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0058   13.2   0.2       0.01   12.4   0.1    1.4  1  TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
     0.0065   13.0   0.1      0.019   11.5   0.2    1.7  2  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0084   12.7   0.1      0.014   12.0   0.1    1.3  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
  ------ inclusion threshold ------
      0.012   12.3   0.1       0.03   11.0   0.1    1.5  2  TIGR02730 carot_isom: carotene isomerase
      0.013   11.9   0.1       0.02   11.2   0.0    1.2  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1


Domain annotation for each model (and alignments):
>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  691.4   0.0  7.9e-211  1.4e-208       1     472 [.      79     555 ..      79     557 .. 0.95

  Alignments for each domain:
  == domain 1    score: 691.4 bits;  conditional E-value: 7.9e-211
  TIGR02732   1 kvaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemglhvffgcyanlfkllkkvgal.dnlllkehthlfvnkggeikeldfrfavgapfnglkafftteqlklvdklrnalalatspivrglvdydgalktirdldkisfaewflskggseaslkrmwdpiayalgfidcenisarcmltifalfaakteasvlrllkgspdkyltkpileyleakgtklylrhkvkeikfekssdg..etrvteliiskaeekkvikadayvaacdvpgikkllpkewrkfeefdkikkleavpvatvqlrydgwvtelkdeekrkqlk......eaagldnllytadadfscfadlalaspedyykegqgsllqlvltpgdpflkksneeivkrvdkqvkelfpsskelkllwssvvklaqslyreapgmdlfrpdqktpianfflagsytkqdyidsmegatlsgrkaaaa 472
                k+ ivgaglag+ +a++l+dagh+ve++e r+f+ggkv sw+dkdgnhiemglhvffgcy+nlf ++k+ g + +nl++keh h+fvn+gge+++ldfrf +gap+ gl+af  teql ++dk +na+ l+tspivr+lvd+dg + ++r+ld+i+f+ewf + gg+++sl+rmwd iayalgf+dc+ isar mltif+lfa +teasvlr+l+gsp++ l++pi +yle++g k+ l   +kei ++ + d+   tr+ +l+i ++   +  + da +aacdvpgikk+lp+ +rk++efdki++l++vp+atvq+r+dgwvtel+de++  ++       + ag+dnlly+ d++fscfadlal+sp +yykeg+gsl+q v+   ++ +++sn+++v     q++++fpss++l+ +ws+vvkl+qslyre+ g+d frp q+tpi nfflagsyt qdy+dsmegat sg   a+ 
  MMETSP1061-20121228|791_1  79 KIGIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKVSSWQDKDGNHIEMGLHVFFGCYYNLFGIMKRTGGFdKNLRIKEHVHTFVNEGGELGSLDFRFPIGAPVSGLQAFAKTEQLGIEDKFHNAVRLGTSPIVRALVDFDGGMDMVRELDDITFTEWFTQLGGKRGSLDRMWDAIAYALGFLDCDTISARAMLTIFMLFAIRTEASVLRMLDGSPQTGLHDPIINYLEERGVKINLSSPCKEIVHDIDPDTglPTRIKGLKIGSTATYH--EFDAVIAACDVPGIKKVLPESFRKYDEFDKIYNLDTVPIATVQVRFDGWVTELNDENRMMDISgdqsdgRGAGIDNLLYSVDTEFSCFADLALTSPGEYYKEGEGSLIQAVFD--ERAFTRSNQQLVDDCIAQLNKVFPSSRKLNCTWSNVVKLGQSLYREGTGQDKFRPAQATPIPNFFLAGSYTYQDYLDSMEGATRSGLMVADE 555
                789******************************************************************9986269***************************************************************************************************************************************************************************9988776336899999998877666..5699****************************************************9976653222223689***************************************85..78899*********************************************************************************988765 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   0.0   3.3e-53   5.8e-51       2     316 ..      80     403 ..      79     410 .. 0.88
   2 !   87.1   0.0   1.3e-27   2.3e-25     314     452 ..     422     556 ..     416     557 .. 0.90

  Alignments for each domain:
  == domain 1    score: 171.4 bits;  conditional E-value: 3.3e-53
  TIGR02731   2 vaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffgaypnllqllkeln.iedrlqwkehslifaqpdkpgelsrfdvpd.lpaplnvvlailrnndmltweekikfalgl.....lpaivr...gqkyveeldkltlsewlkkqgvpervndevfiaaskalnfidpdelsatvvltalnrflqerygsklafldgapperlcqpivdyitsrggevrlnarlkeiv..lnedgsvkafaladle.gkesfevtadayvsalavdilklllpkpwkeleffkkleglegvpvinvhlwfdrklttv 316
                + i gaglag+ aa  ladagh+  ++e r  +ggkv++w+d+dg+ +e glh+ffg y nl  ++k  +  +  l+ keh   f   ++ gel  +d+   + ap+ ++ a  +  + l  e+k + a+ l     ++a+v    g + v eld++t++ew+ + g +    d ++ a++ al f+d d +sa+ +lt +  f      s l +ldg+p   l +pi++y+++rg +++l ++ keiv  +++d+ + +  +++l+ g +    + da ++a  v  +k++lp+ +++ + f k+ +l+ vp+  v++ fd  +t++
  MMETSP1061-20121228|791_1  80 IGIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKVSSWQDKDGNHIEMGLHVFFGCYYNLFGIMKRTGgFDKNLRIKEHVHTFV--NEGGELGSLDFRFpIGAPVSGLQAFAK-TEQLGIEDKFHNAVRLgtspiVRALVDfdgGMDMVRELDDITFTEWFTQLGGKRGSLDRMWDAIAYALGFLDCDTISARAMLTIFMLFAIRTEASVLRMLDGSPQTGLHDPIINYLEERGVKINLSSPCKEIVhdIDPDTGLPT-RIKGLKiGSTATYHEFDAVIAACDVPGIKKVLPESFRKYDEFDKIYNLDTVPIATVQVRFDGWVTEL 403
                6799**************************************************************998626667******88775..67899999888755********99876.577899999988876532222677774444899******************999999***************************************************************************922455555554.4555442778888999*********************************************877765 PP

  == domain 2    score: 87.1 bits;  conditional E-value: 1.3e-27
  TIGR02731 314 ttvdhllfsrsellsvyadmsetc..keyadpdksmlelvlapakdwigrsdeeiieatlkeleklfpdelkadekakllkskvvktprsvykatpgreklrpaqktpienfflagdytkqkylasmegavlsgklaaqai 452
                + +d ll+s  + +s +ad++ t     y++ + s+++ v+       +rs++++++  +++l+k+fp+  k     +   s+vvk  +s+y+  +g++k+rpaq+tpi+nfflag+yt q yl smega  sg ++a+++
  MMETSP1061-20121228|791_1 422 AGIDNLLYSVDTEFSCFADLALTSpgEYYKEGEGSLIQAVFDE--RAFTRSNQQLVDDCIAQLNKVFPSSRK----LNCTWSNVVKLGQSLYREGTGQDKFRPAQATPIPNFFLAGSYTYQDYLDSMEGATRSGLMVADEV 556
                579******************9973244678899999999975..5689*******************8766....678899*****************************************************999987 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   1.4e-33   2.4e-31       3     298 ..      82     400 ..      80     417 .. 0.83
   2 !   58.4   0.0   9.2e-19   1.6e-16     340     429 ..     468     557 ..     448     558 .. 0.93

  Alignments for each domain:
  == domain 1    score: 107.3 bits;  conditional E-value: 1.4e-33
  TIGR03467   3 vvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiDngqHvllgaytellallarvgaedrlql.erleltfldpegresrLrl.srlpaPlhlakgllrakglsladklala......rlllalkrerl.....raaadetvaewLkakgqserlierlwepllvsaLNedperasaklaakVlrdsllakreasdlllprvdLselfvepaarylesrggevrlgtrvreleas...aggiralve..aaeet...laadavvlAvpperaasllpe....edlaaklaalesspIttvhlrldrev 298
                +vG+GlAG+ AA+ La+aG +v+++E r+ +GG+++s +d++ +  i  g Hv  g+y +l+  ++r+g  d+    ++   tf++++g+  +L+   ++ aP   ++++++ ++l+++dk++ a       +++al+  +      r+++d t++ew ++ g  +  ++r+w+ ++ +    d +++sa+++  ++   ++ + eas l++      + + +p+++yle+rg++++l+   +e+  +   ++g  ++++    ++t   +++dav+ A     ++++lpe     d ++k+ +l++ pI+tv +r+d  v
  MMETSP1061-20121228|791_1  82 IVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKVSSWQDKDGN-HIEMGLHVFFGCYYNLFGIMKRTGGFDKNLRiKEHVHTFVNEGGELGSLDFrFPIGAPVSGLQAFAKTEQLGIEDKFHNAvrlgtsPIVRALVDFDGgmdmvRELDDITFTEWFTQLGGKRGSLDRMWDAIAYALGFLDCDTISARAMLTIFM-LFAIRTEASVLRMLDGSPQTGLHDPIINYLEERGVKINLSSPCKEIVHDidpDTGLPTRIKglKIGSTatyHEFDAVIAACDVPGIKKVLPEsfrkYDEFDKIYNLDTVPIATVQVRFDGWV 400
                9************************************9999988.9*********************9876665554888899999999999999835779*******************986441111112334444321123356******************************999899************996.799999999999988888888899****************99998876522233333333322333335569********************999889999******************877 PP

  == domain 2    score: 58.4 bits;  conditional E-value: 9.2e-19
  TIGR03467 340 dlereeladrivaelrrllpkvaeakllkakvikekrAtFaatpglerlRPgartplpnlfLAGDwtatgyPATlEgAvrSGvqAAeavl 429
                 +++++l+d   a+l++++p  ++ + ++++v+k  +  +    g++  RP+++tp+pn fLAG +t  +y   +EgA+rSG   A+ v+
  MMETSP1061-20121228|791_1 468 TRSNQQLVDDCIAQLNKVFPSSRKLNCTWSNVVKLGQSLYREGTGQDKFRPAQATPIPNFFLAGSYTYQDYLDSMEGATRSGLMVADEVI 557
                57899*********************************************************************************9987 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.2   7.6e-10   1.4e-07       3      50 ..      82     130 ..      80     136 .. 0.89
   2 ?   -2.2   0.0       1.4   2.6e+02     228     280 ..     308     368 ..     298     383 .. 0.66

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 7.6e-10
  TIGR02734   3 ViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleed.GfrfDtG 50 
                ++GaGl+G+ +A+ La aG++v+++e r  +GG+ ++++++ G ++ +G
  MMETSP1061-20121228|791_1  82 IVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKVSSWQDKdGNHIEMG 130
                89************************************97648777666 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.4
  TIGR02734 228 aedlggelrlnaeveeieteg.......erataveledg.erleadavvsnaDlvhtykkl 280
                 e+ g++++l+++ +ei ++        +r+++++ +++ + +e+dav+ ++D+   +k l
  MMETSP1061-20121228|791_1 308 LEERGVKINLSSPCKEIVHDIdpdtglpTRIKGLKIGSTaTYHEFDAVIAACDVPGIKKVL 368
                5566666666666666666555666777666666665541557899******998766544 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.2   1.7e-07     3e-05     378     419 ..      76     117 ..      65     126 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.7e-07
  TIGR03997 378 rrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvk 419
                ++ k+ +vG+G aG+ aa+  a  Gh+v ++e    +GG+v 
  MMETSP1061-20121228|791_1  76 ESLKIGIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKVS 117
                556899*********************************997 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.1     4e-07   7.1e-05     143     182 ..      77     116 ..      67     119 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 4e-07
  TIGR01317 143 GkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182
                  k+++vG+G aG+ aa  l+ aGh+v +fe    vGG +
  MMETSP1061-20121228|791_1  77 SLKIGIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKV 116
                5699***************************999999965 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.3e-07   7.7e-05     128     171 ..      72     115 ..      57     119 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.3e-07
  TIGR01316 128 kapstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171
                k++    k+ ++GaG aG+  a +la +Gh+v++fe  +  GG 
  MMETSP1061-20121228|791_1  72 KKNEESLKIGIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGK 115
                55667789****************************98888885 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   5.7e-07    0.0001       2      37 ..      80     115 ..      79     120 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 5.7e-07
  TIGR03197   2 vavIGaGiAgaalalsLarrGvqvtllekdeklaqg 37 
                + ++GaG+Ag+++a  La +G+qv+++e ++ ++ +
  MMETSP1061-20121228|791_1  80 IGIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGK 115
                679************************987766655 PP

>> TIGR00137  gid_trmFO: tRNA:m(5)U-54 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   8.4e-07   0.00015       2      33 ..      79     110 ..      78     120 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 8.4e-07
  TIGR00137   2 kvnviGgGlaGseaawqlakeGvrvilyemrp 33 
                k+ ++G+GlaG  aa  la++G++v ++e+rp
  MMETSP1061-20121228|791_1  79 KIGIVGAGLAGMVAAMDLADAGHQVEMFELRP 110
                6889***************************9 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.3   2.4e-06   0.00042       3      37 ..      82     116 ..      80     118 .. 0.94
   2 ?   -1.7   0.0       1.2   2.1e+02     113     134 ..     305     327 ..     294     347 .. 0.69

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.4e-06
  TIGR00275   3 iiGgGaaGlmaAitaaeegakVlllEknkkigkKl 37 
                i+G+G aG++aA+ +a +g++V ++E +  +g K+
  MMETSP1061-20121228|791_1  82 IVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKV 116
                9***************************9999998 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.2
  TIGR00275 113 lkelkelgvevlteskvksi.kk 134
                 + l+e gv+++++s +k+i ++
  MMETSP1061-20121228|791_1 305 INYLEERGVKINLSSPCKEIvHD 327
                46677788888888888877554 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.5e-06   0.00062       3      59 ..      79     134 ..      77     145 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.5e-06
  TIGR00031   3 dyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdekgllvhkyGphif 59 
                ++ ivGaGl+G+v a  la+ +++v + e r  +GG +   +d++g  + + G h+f
  MMETSP1061-20121228|791_1  79 KIGIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKVSSWQDKDGNHI-EMGLHVF 134
                5669********************************9876666554333.3566665 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   1.2e-05    0.0021       5      36 ..      82     113 ..      80     117 .. 0.90
   2 ?    2.6   0.1      0.11        19     136     182 ..     552     600 ..     532     612 .] 0.70

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.2e-05
  TIGR02032   5 vvGaGpaGssaAlrlakkGlrVlllekkelpr 36 
                +vGaG aG  aA +la++G++V ++e + +++
  MMETSP1061-20121228|791_1  82 IVGAGLAGMVAAMDLADAGHQVEMFELRPFVG 113
                9************************9877765 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.11
  TIGR02032 136 vtakivigAdGakskvakklg.lkkekrelavalraeveee.veeevde 182
                v  +++  AdG+++  a +++ +++ ++e++v+ ++  e+  +ee++ e
  MMETSP1061-20121228|791_1 552 VADEVIARADGPNGLKAMSMKaQEAAEEEVSVEEESGSETSpEEEKESE 600
                55578889********999995558888888888776666534444444 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.4e-06    0.0011     531     577 ..      71     117 ..      57     119 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.4e-06
  TIGR03315 531 pqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvk 577
                 ++++e  k+ ++GaG aG+ a++ la aG++v +fe +  +gG v+
  MMETSP1061-20121228|791_1  71 GKKNEESLKIGIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKVS 117
                456677889****************************9999999876 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2     7e-06    0.0013       1      32 [.      80     111 ..      80     120 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 7e-06
  TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekdev 32 
                + ++G+G+ G++ A+ La++gh+v+++e +++
  MMETSP1061-20121228|791_1  80 IGIVGAGLAGMVAAMDLADAGHQVEMFELRPF 111
                579*************************9854 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     2e-05    0.0036       4      44 ..      80     120 ..      77     127 .. 0.91
   2 ?   -1.8   0.0       1.1   1.9e+02     220     264 ..     285     330 ..     268     390 .. 0.74
   3 ?   -3.9   0.0       4.8   8.5e+02     452     489 ..     518     557 ..     513     559 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2e-05
  TIGR02733   4 vvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfk 44 
                + ++GaG+aG+ aa  la  G +v+++e    vGG  s ++
  MMETSP1061-20121228|791_1  80 IGIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKVSSWQ 120
                679********************************998876 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.1
  TIGR02733 220 aPrGlyhlegsmqv.lsdrlvealkkdggelllgqrveaietkeek 264
                +   l  l+gs q+ l d + + l+++g+++ l+   ++i ++ + 
  MMETSP1061-20121228|791_1 285 EASVLRMLDGSPQTgLHDPIINYLEERGVKINLSSPCKEIVHDIDP 330
                555677799999987999************9999888888776554 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 4.8
  TIGR02733 452 lasrtPlkglWlvGdsiyPG..eGtaGvsysalavvrqll 489
                 a+ tP+ +++l G  +y    +   G + s l+v+  ++
  MMETSP1061-20121228|791_1 518 PAQATPIPNFFLAGSYTYQDylDSMEGATRSGLMVADEVI 557
                57889*******9999997533566777777777776665 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.7e-05    0.0031       4      72 ..      79     146 ..      76     173 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.7e-05
  TIGR00562   4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy.TrkesGyllEkGprtlleskegildllk 72 
                k+ +vG+G++G+ +a  l+    + ++ ++E ++ vGGk+   ++++G  +E G + + +    +  ++k
  MMETSP1061-20121228|791_1  79 KIGIVGAGLAGMVAAMDLADA--GHQVEMFELRPFVGGKVSsWQDKDGNHIEMGLHVFFGCYYNLFGIMK 146
                678****************99..777778***********96789********99888766655555555 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.2e-05    0.0039     136     179 ..      72     115 ..      40     118 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.2e-05
  TIGR01318 136 kvkktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGl 179
                k ++++ ++ ++GaG aG+  a  la aG +v +f+  p +GG 
  MMETSP1061-20121228|791_1  72 KKNEESLKIGIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGK 115
                45677889**********************************95 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   5.2e-05    0.0093     172     211 ..      81     120 ..      71     128 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.2e-05
  TIGR01372 172 LvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllsea 211
                 +vGaG aG+ aA   a+aG +v + + ++ +GG++ s +
  MMETSP1061-20121228|791_1  81 GIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKVSSWQ 120
                59********************************987654 PP

>> TIGR01811  sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   5.7e-05      0.01       3      31 ..      82     110 ..      80     117 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.7e-05
  TIGR01811   3 vvGtGlaGlsaaiklaelGydvklfsyqd 31 
                +vG+GlaG++aa+ la++G +v++f +++
  MMETSP1061-20121228|791_1  82 IVGAGLAGMVAAMDLADAGHQVEMFELRP 110
                79***********************9877 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.2   0.00011     0.019       4      38 ..      82     115 ..      79     119 .. 0.93
   2 ?   -2.9   0.0       2.4   4.4e+02     134     161 ..     302     329 ..     296     358 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00011
  TIGR01813   4 vvGsGlAGlsaaleakkaglaevvvleKapviGGN 38 
                +vG+GlAG+ aa+++ +ag ++v + e  p++GG 
  MMETSP1061-20121228|791_1  82 IVGAGLAGMVAAMDLADAG-HQVEMFELRPFVGGK 115
                9******************.9************95 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.4
  TIGR01813 134 qklskkakkegvelrlnskvedlikddq 161
                +++ ++++++gv+++l s   ++++d +
  MMETSP1061-20121228|791_1 302 DPIINYLEERGVKINLSSPCKEIVHDID 329
                56778999999***99999999998844 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   7.8e-05     0.014       2      32 ..      79     109 ..      78     132 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.8e-05
  TIGR03026   2 kiavvGlGYvGlplaallaekgheVvgvDid 32 
                ki +vG+G  G++ a+ la++gh+V +++++
  MMETSP1061-20121228|791_1  79 KIGIVGAGLAGMVAAMDLADAGHQVEMFELR 109
                89***********************999876 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00017      0.03       5      59 ..      82     137 ..      79     144 .. 0.87
   2 ?   -3.1   0.0       3.1   5.6e+02     235     310 ..     304     374 ..     271     382 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00017
  TIGR02730   5 vigsgigglvtatqlaakgakvlvle.kylipggsagyferegykfdvgaslifgf 59 
                ++g+g+ g+v+a +la  g +v ++e +  + g  + + +++g ++++g  ++fg 
  MMETSP1061-20121228|791_1  82 IVGAGLAGMVAAMDLADAGHQVEMFElRPFVGGKVSSWQDKDGNHIEMGLHVFFGC 137
                68**********************9934456666778889**************95 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3.1
  TIGR02730 235 lvkglekaggkirykarvtkiilendkavgvkladgekirakrivsnatrwdtfgkllkeenlpkkekkfrkaykk 310
                +++ le+ g ki   +   +i+ + d   g+      +i++ +i s at +  f++++ + ++p  +k   ++++k
  MMETSP1061-20121228|791_1 304 IINYLEERGVKINLSSPCKEIVHDIDPDTGLP----TRIKGLKIGSTAT-YHEFDAVIAACDVPGIKKVLPESFRK 374
                66778888888888888888888887777764....5688888888887.56689999888888877776666665 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011      0.02     372     421 ..      77     126 ..      61     149 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
  TIGR03996 372 pgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargdGls 421
                + ++ +vG G aG+ aa  la +Gh+v + e    +GG v      dG +
  MMETSP1061-20121228|791_1  77 SLKIGIVGAGLAGMVAAMDLADAGHQVEMFELRPFVGGKVSSWQDKDGNH 126
                556779*********************************99988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.49u 0.12s 00:00:00.61 Elapsed: 00:00:00.49
# Mc/sec: 1648.52
//
Query:       MMETSP1061-20121228|794_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-59  199.8   0.1    3.4e-37  125.9   0.0    3.5  4  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.6e-35  120.8   3.6    1.2e-33  114.5   0.0    4.0  3  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.6e-32  110.7   0.8    1.2e-31  107.9   0.2    2.2  2  TIGR03689 pup_AAA: proteasome ATPase
    5.8e-29   99.0   1.3    5.7e-27   92.4   0.6    3.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
     0.0072   12.8   0.0      0.012   12.1   0.0    1.3  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
  ------ inclusion threshold ------
      0.014   11.8   0.0      0.027   10.8   0.0    1.4  1  TIGR00764 lon_rel: putative ATP-dependent protease


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.13        91     593     614 ..      88     109 ..      76     157 .. 0.79
   2 !   58.3   0.0   1.4e-19   9.6e-17     180     266 ..     167     256 ..     134     262 .. 0.80
   3 !  125.9   0.0     5e-40   3.4e-37     455     641 ..     167     383 ..     166     395 .. 0.80
   4 !   27.7   0.0   2.6e-10   1.8e-07     370     438 ..     416     482 ..     393     485 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.13
  TIGR01243 593 viaatnrpdildpallrpgrld 614
                +i++  rpd++ p++l p  + 
  MMETSP1061-20121228|794_1  88 MIGSNGRPDLITPSILDPDSIA 109
                6888899999999999997654 PP

  == domain 2    score: 58.3 bits;  conditional E-value: 1.4e-19
  TIGR01243 180 igglkeavkkirelvelplkh.pelfeklgieppkgvllygppgtgktllakavaneagay..fiaingpeimskyygeseerlreifke 266
                +ggl++   +i+  +  pl   p l+++lgi p +g+llyg pg gk+lla ++    + +  + ++ gpei+ k++g se++lr+if++
  MMETSP1061-20121228|794_1 167 VGGLDDVLVQIKRRIWTPLAApPSLLKELGIHPARGLLLYGKPGCGKSLLASTLGSLLSPFrpITVVSGPEILDKFVGSSEKNLRDIFDN 256
                788888888888888888876257888899999999999999999999999888887776533578889999999999999999998875 PP

  == domain 3    score: 125.9 bits;  conditional E-value: 5e-40
  TIGR01243 455 iggleevkqelreavewplkak.evfeklgirppkgvllfgppgtgktllakavate.sganfi.avrgpeilskwvgesekaireif.......rkar...........qaapaiifldeidaiapargadlse.....a..vtdrivnqllteldgleens.dvvviaatnrpdildpallrpgrldrlilvpapde.earleifkihtrslpla 641
                +ggl++v  +++  +  pl a+  +++ lgi+p +g+ll+g pg gk+lla ++ +  s    i  v gpeil k+vg sek++r+if       +k r            aa  ++ +de da+a +rg + ++     a    d +vnqll+++dg+++     +vi+ tn+  +++pallrpgr++  i +p+p   e r+ i+k+ht+++  a
  MMETSP1061-20121228|794_1 167 VGGLDDVLVQIKRRIWTPLAAPpSLLKELGIHPARGLLLYGKPGCGKSLLASTLGSLlSPFRPItVVSGPEILDKFVGSSEKNLRDIFdnppdiyEKFRlneddggdslaSAALHVVVMDEFDAVARSRGGSDGKggqgdAgvARDSVVNQLLAKMDGVQPLAvPTLVIGLTNKRSLIEPALLRPGRFEVQIEIPPPRTvEQRFSILKVHTQHMFNA 383
                79*****************986378999************************9987525555551579*****************9983333333454433333333322467789*************98754312121343569**************9862689*****************************975499**********99766 PP

  == domain 4    score: 27.7 bits;  conditional E-value: 2.6e-10
  TIGR01243 370 ldklaevthgfvgadlaalakeaamaalrrllregkidleaeeipkevleelkvtkkdfkealkmveps 438
                l +la  t  f ga la +a+ aa +al r + + +++ e+ ei    + +  vt++df+ea+ +v+ s
  MMETSP1061-20121228|794_1 416 LMTLATSTDSFSGAALAGIARAAASRALERAVGQFSVEDESAEISS--IMNCLVTQDDFYEAVDDVRGS 482
                6789****************************98888888888864..66888*************977 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.059        40     263     286 ..      87     110 ..      81     161 .. 0.75
   2 !  114.5   0.0   1.8e-36   1.2e-33     124     313 ..     167     384 ..     159     390 .. 0.80
   3 ?    1.7   0.1     0.036        24     317     358 ..     416     457 ..     389     480 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.059
  TIGR01242 263 kviaatnrldildpallrpGrfdr 286
                ++i++  r+d++ p++l p  +  
  MMETSP1061-20121228|794_1  87 RMIGSNGRPDLITPSILDPDSIAT 110
                5799999**********9976654 PP

  == domain 2    score: 114.5 bits;  conditional E-value: 1.8e-36
  TIGR01242 124 iGGlekqlreireavelplkk.pelfeevGieppkGvllyGppGtGktllakavaeetna.tfirvv.gselvkkyiGeGarlvrevf..........klakek........apsiifideidaiaakrldss...tsGdrevqr..tllqllaeldGfdprgn.vkviaatnrldildpallrpGrfdrlievplp.dleGrleilkihtrkmklae 313
                +GGl++ l +i+  +  pl   p l++e+Gi+p +G+llyG pG+Gk+lla ++ +       i vv g e++ k++G   + +r++f          +l  +         a  ++ +de da+a  r  s+     Gd  v r   + qlla++dG +p+     vi+ tn+  +++pallrpGrf+  ie+p p ++e r  ilk+ht++m  a+
  MMETSP1061-20121228|794_1 167 VGGLDDVLVQIKRRIWTPLAApPSLLKELGIHPARGLLLYGKPGCGKSLLASTLGSLLSPfRPITVVsGPEILDKFVGSSEKNLRDIFdnppdiyekfRLNEDDggdslasaALHVVVMDEFDAVARSRGGSDgkgGQGDAGVARdsVVNQLLAKMDGVQPLAVpTLVIGLTNKRSLIEPALLRPGRFEVQIEIPPPrTVEQRFSILKVHTQHMFNAG 384
                8******************87368*****************************99876541447776378***************997333322222245444233333222456899*********99876511145799999943467***********97526799**************************9945799**********997665 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.036
  TIGR01242 317 leelaklteGasGadlkaivteaGmfaireerdkvtmedflk 358
                l +la  t+ +sGa l  i+  a   a+ +   + ++ed   
  MMETSP1061-20121228|794_1 416 LMTLATSTDSFSGAALAGIARAAASRALERAVGQFSVEDESA 457
                567888888999998888887777666665555555554433 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.081        55     336     354 ..      88     106 ..      81     141 .. 0.90
   2 !  107.9   0.2   1.7e-34   1.2e-31     184     368 ..     167     366 ..     147     383 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.081
  TIGR03689 336 viGasnredlidPailrPG 354
                +iG+  r dli P+il P 
  MMETSP1061-20121228|794_1  88 MIGSNGRPDLITPSILDPD 106
                699999**********996 PP

  == domain 2    score: 107.9 bits;  conditional E-value: 1.7e-34
  TIGR03689 184 iGGldsqieqirdavelPflh.kelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirlife.......rarekaaeg.......rPvvvffdemdslfrtrGs....Gvssd...vettvvPqllaeldGvesle.nviviGasnredlidPailrPGrldvkirierPdae 368
                +GGld+ + qi+  +  P+   + l +e +++p +G+llyG PGcGk l+a  + + l+         ++    + GPe+l+k+vG +e+++r if+       + r +  +g          vv +de d++ r rG     G   d       vv qlla +dGv+ l    +viG +n+  li+Pa+lrPGr++v+i i  P + 
  MMETSP1061-20121228|794_1 167 VGGLDDVLVQIKRRIWTPLAApPSLLKELGIHPARGLLLYGKPGCGKSLLASTLGSLLSP-F------RP-ITVVSGPEILDKFVGSSEKNLRDIFDnppdiyeKFRLNEDDGgdslasaALHVVVMDEFDAVARSRGGsdgkGGQGDagvARDSVVNQLLAKMDGVQPLAvPTLVIGLTNKRSLIEPALLRPGRFEVQIEIPPPRTV 366
                8*****************987368**************************9988766665.2......33.45699******************997222222244544444322221113458899**********743333444452214679*************9973589***************************999764 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.6   8.3e-30   5.7e-27      78     245 ..     189     383 ..     143     463 .. 0.82

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 8.3e-30
  TIGR01241  78 pkkftklGakiPkGvllvGpPGtGktLlakavaGeag...vpffsisGsdfvemfvGvGasrvrDlfeqa.......k...........knaPciifiDeiDavGrkrgag.....lgggndereqtLnqlLvemDGfetneg.vivlaatnrpdvLDkaLlrPGrfDrqvvvdkPd.lkgreeilkvhakkvkla 245
                p+  ++lG +  +G+ll+G+PG Gk Lla  +        +p   +sG + ++ fvG   + +rD+f++        +           ++a  ++ +De Dav r+rg +      g++   r+  +nqlL+ mDG +      +v+  tn+  ++++aLlrPGrf+ q+ +  P  +++r +ilkvh++++  a
  MMETSP1061-20121228|794_1 189 PSLLKELGIHPARGLLLYGKPGCGKSLLASTLG-SLLspfRPITVVSGPEILDKFVGSSEKNLRDIFDNPpdiyekfRlneddggdslaSAALHVVVMDEFDAVARSRGGSdgkggQGDAGVARDSVVNQLLAKMDGVQPLAVpTLVIGLTNKRSLIEPALLRPGRFEVQIEIPPPRtVEQRFSILKVHTQHMFNA 383
                566789***********************8875.544022556789********************986422222222222222222224567899************8653211233344579**************997755899****************************963899*********987655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.7e-05     0.012     299     399 ..     139     238 ..     133     295 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.7e-05
  TIGR02868 299 rvraaaeRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsv 399
                +++++a R++e++++++     + ++ +  + +++ +++++       a++  lk  +l ++p + + + G+ G+GKs L+++l  ll+p ++  +++g ++
  MMETSP1061-20121228|794_1 139 TAQEVALRVSEIIAKAGSGTSFEGETLGVGGLDDVLVQIKRRIWTPLAAPPsLLK--ELGIHPARGLLLYGKPGCGKSLLASTLGSLLSPFRPITVVSGPEI 238
                5677888888888888777777777777777777777776644444444443555..5677888889************************99999988554 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     4e-05     0.027      37      75 ..     200     236 ..     194     243 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4e-05
  TIGR00764  37 krnvlliGePGvGksmlakamaellpkeeledilvfpnp 75 
                 r +ll G+PG Gks+la +++ ll+ +  ++i v++ p
  MMETSP1061-20121228|794_1 200 ARGLLLYGKPGCGKSLLASTLGSLLSPF--RPITVVSGP 236
                5889*********************964..566666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      204  (0.0497318); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.52
# Mc/sec: 1246.28
//
Query:       MMETSP1061-20121228|797_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-18   63.1   1.3      6e-17   59.5   0.1    2.4  2  TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase
  ------ inclusion threshold ------
      0.012   12.9   0.1      0.018   12.3   0.1    1.4  1  TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR03188  histidine_hisI: phosphoribosyl-ATP diphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.026        53      39      59 ..     193     213 ..     191     217 .. 0.90
   2 !   59.5   0.1   2.9e-20     6e-17       1      83 [.     362     440 ..     362     441 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.026
  TIGR03188  39 EavEviiaaknedkeelveEa 59 
                E vE+i+a++ e+++++v E 
  MMETSP1061-20121228|797_1 193 EEVETILACVPEKSDKVVFEL 213
                679**************9995 PP

  == domain 2    score: 59.5 bits;  conditional E-value: 2.9e-20
  TIGR03188   1 leeLeevieerkeedpeeSytakllekgedkilkKvgEEavEviiaaknedkeelveEaaDllYhllVllaekgvsledvlae 83 
                l++Le ++++r +++pe+Syt++l+++  + + +K+ EEa E+  a +   kee++ E aD+lY+++   a++gvs++d +++
  MMETSP1061-20121228|797_1 362 LRHLEGTLADRLKNAPEGSYTKRLFDD-PELLRDKLVEEAQELSEAET---KEEVAGELADVLYFAMARAAKAGVSIDDAVSV 440
                6789**********************9.9**************76665...589************************98766 PP

>> TIGR00965  dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   8.9e-06     0.018      84     156 ..      68     140 ..      42     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.9e-06
  TIGR00965  84 vatkfadydedefkeaglrkvpgavvrrgafiaknvvlmpsyvnigayvdegtmvdtwatvgscaqigknvhl 156
                   k  d d+d+ k+   + +   v+    +++k   l ps v i   +d  ++v+t   + +c       h+
  MMETSP1061-20121228|797_1  68 DKDKDKDKDKDTRKKLKKKYMKQGVAMASDYLTKTLQLDPSVVSIQFAIDASAIVETDGCISACFLDAGCTHI 140
                44566788888888888888999999999***********************************866666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1642.92
//
Query:       MMETSP1061-20121228|796_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1814.85
//
Query:       MMETSP1061-20121228|799_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   25.9   3.2    5.7e-06   23.6   0.0    2.0  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      1e-05   23.2   0.0    2.4e-05   21.9   0.0    1.5  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    6.6e-05   19.4   0.0    0.00011   18.7   0.0    1.4  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    0.00018   18.2   0.0    0.00035   17.3   0.0    1.4  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
     0.0004   17.3   0.0     0.0013   15.6   0.0    1.7  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
      0.002   15.0   0.2     0.0048   13.8   0.0    1.6  1  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   1.8     0.049        33     392     494 ..     107     206 ..      85     238 .. 0.61
   2 !   23.6   0.0   8.4e-09   5.7e-06     297     361 ..     252     311 ..     211     343 .. 0.59

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.049
  TIGR01628 392 igaanisgrh.qaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnr.nrnvlgnmnkkqqnaaskanqanvkaqpq 494
                      + ++  aa++  ++ q++++  ++q+++ + n+  + + +++++ +p   +++a+       r + n++ n   +++m+k++++  sk+++++  + ++
  MMETSP1061-20121228|799_1 107 A----TAVVPqSAANKAWYTAQQERALSQGQNMVGEANALAVAKLKEMANMKPRYERNMAKL-CSFFARGECNRGaNCPFRHEMPKDRNDPLSKQSTKDRFYGSS 206
                2....333452445555555577777777777777777777777777766667644444444.345556666666444448888877777777777766655554 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 8.4e-09
  TIGR01628 297 vddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalA 361
                +++ ++r++F  fGeitS+++  +     kg  FV ++++++A  A+  ++ + l  + ++v  A
  MMETSP1061-20121228|799_1 252 LTEPDIRDQFYSFGEITSVRIQAE-----KGQAFVEYTEPDAAELAIASMNRRSLLDRQIMVKWA 311
                344444444444444444444322.....233444444444444444444444444444444433 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       1.2   8.4e+02     176     208 ..     107     139 ..      81     171 .. 0.52
   2 !   21.9   0.0   3.5e-08   2.4e-05      15      82 ..     252     313 ..     248     319 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.2
  TIGR01661 176 skallsdleavlnaqltrvprstiltaaaiapl 208
                  a+ ++ +a ++  +++  r++  +  + + +
  MMETSP1061-20121228|799_1 107 ATAVVPQSAANKAWYTAQQERALSQGQNMVGEA 139
                333333333333333333333333333333322 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 3.5e-08
  TIGR01661  15 mtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvsyarP 82 
                +t+ +ir  f s+Gei s+++  +k      G  fv+y +++ ae a++s+n   l ++ i v +ar 
  MMETSP1061-20121228|799_1 252 LTEPDIRDQFYSFGEITSVRIQAEK------GQAFVEYTEPDAAELAIASMNRRSLLDRQIMVKWARS 313
                7999***************998877......557********************************95 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.6e-07   0.00011     307     375 ..     251     313 ..     206     339 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.6e-07
  TIGR01642 307 dlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtv 375
                +l++  +++   sFG++ +  +         KG aF+ey ++  ++lAia++n  +l d+++ vk A  
  MMETSP1061-20121228|799_1 251 KLTEPDIRDQFYSFGEITSVRI------QAEKGQAFVEYTEPDAAELAIASMNRRSLLDRQIMVKWARS 313
                6889999999999999988776......467*********************************99865 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.1e-07   0.00035     107     179 ..     241     309 ..     206     333 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 5.1e-07
  TIGR01645 107 srvvGsisf.elkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvg 179
                 r  G   +  l e  +r  f  fG i s+ +      q  kg afve   P+aa la  +mn   l  r + v 
  MMETSP1061-20121228|799_1 241 LRFQGEAPYpKLTEPDIRDQFYSFGEITSVRI------QAEKGQAFVEyTEPDAAELAIASMNRRSLLDRQIMVK 309
                56666555436888889999999999999876......5678999999777999999999999988888888776 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.25   1.7e+02      96     142 ..      59     105 ..      42     149 .. 0.81
   2 !   15.6   0.0   1.9e-06    0.0013     320     371 ..     261     311 ..     249     332 .. 0.72

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.25
  TIGR01649  96 ssgslalveaGlesagpnkVLrvivenllypvtlDvlyqifnrvGkV 142
                ++g l +ve+    a+  +V  v + +l+y + + v  +i  + G  
  MMETSP1061-20121228|799_1  59 TKGRLKKVEICRSCAQAKNVCQVCIYDLQYGLPVKVRDRILAEAGSA 105
                56778888998888999999999999999998888888887777765 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.9e-06
  TIGR01649 320 fgvYGdvervkilknkketalvemadpqqaqlalthLdkvklfgkklrvavS 371
                f  +G+++ v+i +  k++a+ve+++p++a+la+  +++  l ++++ v+ +
  MMETSP1061-20121228|799_1 261 FYSFGEITSVRI-QAEKGQAFVEYTEPDAAELAIASMNRRSLLDRQIMVKWA 311
                555777777776.455677788888888888888888888888888777654 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     7e-06    0.0048     230     298 ..     251     313 ..     217     337 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7e-06
  TIGR01622 230 nitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD 298
                 +tE ++r+ F +FGei +v++q +      kG  F+++++ + a  A+  +N   l  R+i v  a+ 
  MMETSP1061-20121228|799_1 251 KLTEPDIRDQFYSFGEITSVRIQAE------KGQAFVEYTEPDAAELAIASMNRRSLLDRQIMVKWARS 313
                689*******************975......6789**************************99988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 1830.82
//
Query:       MMETSP1061-20121228|801_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.12s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|798_1  [L=702]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (702 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.48
# Mc/sec: 1930.34
//
Query:       MMETSP1061-20121228|806_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 433.68
//
Query:       MMETSP1061-20121228|803_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 992.79
//
Query:       MMETSP1061-20121228|808_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.34
# Mc/sec: 691.00
//
Query:       MMETSP1061-20121228|811_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 541.16
//
Query:       MMETSP1061-20121228|814_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-13   45.9   8.3     0.0078   13.8   0.0    4.1  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.9     4e-06     0.016      16      25 ..       9      18 ..       9      19 .. 0.94
   2 !   12.1   0.0   6.3e-06     0.026       2      24 ..      21      42 ..      20      44 .. 0.89
   3 !    9.4   0.0   4.6e-05      0.19       1      18 [.      45      61 ..      45      63 .. 0.94
   4 !   13.8   0.0   1.9e-06    0.0078       1      22 [.      70      90 .]      70      90 .] 0.99

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4e-06
  TIGR02167 16 fdTsnVTnMs 25
               +dTs+V+nM 
  MMETSP1061-20121228|814_1  9 WDTSSVNNMG 18
               *********5 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 6.3e-06
  TIGR02167  2 FsgCssLtsLDlSnfdTsnVTnM 24
               F g ss+++ ++ +++++nV  M
  MMETSP1061-20121228|814_1 21 FLGASSFNQ-PIGSWNVENVYSM 42
               9999*****.**********777 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 4.6e-05
  TIGR02167  1 MFsgCssLtsLDlSnfdT 18
               MF++ s++++ ++ +++T
  MMETSP1061-20121228|814_1 45 MFRSTSAFNQ-PIGSWNT 61
               9*********.******* PP

  == domain 4    score: 13.8 bits;  conditional E-value: 1.9e-06
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVT 22
               MF + ss+++ ++ ++ T++VT
  MMETSP1061-20121228|814_1 70 MFEYASSFNQ-PIGSWSTGKVT 90
               **********.**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.09s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|818_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    6.2   6.3        1.9    6.0   4.3    1.1  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   4.3   0.00047       1.9     147     223 ..      66     129 ..      18     158 .. 0.40

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00047
  TIGR03354 147 egaaprpapqaasldPlkaldqepasaadlddgalsaelaeevaealpadlasidaestlepelaplpaaqpapapq 223
                ++a+p+p +++ +++P ka  +            ++++ + + ++++ ++ a++++++t  p++ap pa+++ p+  
  MMETSP1061-20121228|818_1  66 KSATPNPTKKP-TEAPTKAPSK------------TKSPKKAKKNSKKSPPTAAPTKKPTEAPTPAPTPAPTSPPTTG 129
                22222222221.1111111111............1111111111122222222222333333333333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 643.95
//
Query:       MMETSP1061-20121228|826_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.63
# Mc/sec: 142.46
//
Query:       MMETSP1061-20121228|831_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 425.30
//
Query:       MMETSP1061-20121228|828_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1369.39
//
Query:       MMETSP1061-20121228|834_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 433.68
//
Query:       MMETSP1061-20121228|836_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|841_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 431.96
//
Query:       MMETSP1061-20121228|838_1  [L=700]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-05   20.4   0.0    6.9e-05   19.8   0.0    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do
  ------ inclusion threshold ------
      0.079    9.7   0.0       0.12    9.2   0.0    1.2  1  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.4e-08   6.9e-05     262     302 ..     414     454 ..     377     458 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.4e-08
  TIGR02037 262 lvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaig 302
                +va +++gs+A++aG++ G v+lkvng ++k+ ++ ++ i+
  MMETSP1061-20121228|838_1 414 VVAFIVEGSSARSAGVELGHVLLKVNGVDVKNPKEASRLIK 454
                7999******************************9999887 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   5.7e-05      0.12     124     157 ..     422     455 ..     418     487 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 5.7e-05
  TIGR02860 124 sPaeeagiqvGDlilkvngekikeeedvakline 157
                s a++ag+++G ++lkvng ++k+ ++ ++li+e
  MMETSP1061-20121228|838_1 422 SSARSAGVELGHVLLKVNGVDVKNPKEASRLIKE 455
                45899*************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 1776.78
//
Query:       MMETSP1061-20121228|847_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|842_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1763.00
//
Query:       MMETSP1061-20121228|845_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-48  162.5   0.0    3.2e-48  161.8   0.0    1.3  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.8   0.0   7.8e-52   3.2e-48       2     148 ..     104     259 ..     103     265 .. 0.92

  Alignments for each domain:
  == domain 1    score: 161.8 bits;  conditional E-value: 7.8e-52
  TIGR00401   2 kitfalGCfWgveklfrki..dgvektkvGylngktenPtyeevCsgdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqesakykkkivteiekaenf.......yeaeeyhqqylkkn 148
                 ++fa GCfWg ek  +++  dg+++t+vGy +g  +nPtyee Csg tgh+e v+v+ydp+++++ ++l  f+e +dP +++ qgnD+Gtqyrsg y+ +de+++++eask +++++   +++i+tei+ a+++       +  e yhqqyl+k 
  MMETSP1061-20121228|845_1 104 VAVFANGCFWGSEKGIWRLpgDGIHSTAVGYCAGFSPNPTYEEACSGRTGHTEGVRVVYDPDKIGFVDILRWFWEAHDPCSGMGQGNDRGTQYRSGFYYFDDEQKALIEASKAAYEKALGGERPITTEIAGASDYdqygglwFFGEAYHQQYLAKP 259
                789***********999762268**********************************************************************************************9999**********99875545555789********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1303.89
//
Query:       MMETSP1061-20121228|850_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.3   0.4      0.031   10.9   0.3    1.1  1  TIGR00939 2a57: nucleoside Transporter


Domain annotation for each model (and alignments):
>> TIGR00939  2a57: nucleoside Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   7.4e-06     0.031     182     273 ..      46     135 ..      43     137 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.4e-06
  TIGR00939 182 vvvilisivlylllrklkfarkylekkldkeaqedetkkelrskaeendepakgdkeskteelsaekepes.keeeevelktsvftvlkkvkl 273
                 +v +++ v+ + +  l+f+  +++ +++ +    + kk++ s++ ++++++  + + k+++    +++e+ + e e+++ ++ +++l k+k+
  MMETSP1061-20121228|850_1  46 FAVFMMCTVAIVYVIALSFIADNQTAGQKPGVVSTVRKKDVVSPQKVQRQAEDYKAKRKEDQK---EQQEQaPPEHEKHISKPWEEILPKLKS 135
                57899**********************98999999***********88888777766666333...333444678888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1664.35
//
Query:       MMETSP1061-20121228|854_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00031   18.5   0.2    0.00032   18.5   0.1    1.1  1  TIGR02869 spore_SleB: spore cortex-lytic enzyme
  ------ inclusion threshold ------
      0.062   11.1   1.0      0.066   11.0   0.7    1.1  1  TIGR00986 3a0801s05tom22: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR02869  spore_SleB: spore cortex-lytic enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   1.5e-07   0.00032     152     184 ..      25      62 ..       6      66 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.5e-07
  TIGR02869 152 eeakkavldai.nGw....dPsggalyyfnpakatssW 184
                e + +a +da+ +Gw    dPs g +yy+n++   ssW
  MMETSP1061-20121228|854_1  25 EADENADVDALpDGWkemvDPSSGDVYYYNAESGKSSW 62 
                55667778888557766679*****************9 PP

>> TIGR00986  3a0801s05tom22: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.7   3.2e-05     0.066      21      71 ..       2      52 ..       1      64 [. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.2e-05
  TIGR00986 21 veeeedaedqedvdeedssdsDfeddeeetllDri.vaLkdivpptkrqkia 71
               v  +++ae+ ++v +e +++  fe de +  +D +    k++v p+    ++
  MMETSP1061-20121228|854_1  2 VATDANAEEYDVVADEKEEEIGFEADE-NADVDALpDGWKEMVDPSSGDVYY 52
               567999*******************88.566777725789999988765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1061-20121228|853_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0079   14.3   1.1      0.025   12.7   0.0    2.0  2  TIGR04165 methano_modCys: Cys-rich peptide, TIGR04165 family
  ------ inclusion threshold ------
       0.73    8.1   4.5        0.3    9.4   0.6    2.0  2  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR04165  methano_modCys: Cys-rich peptide, TIGR04165 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.2e-05     0.025      34      48 ..      74      88 ..      54      90 .. 0.68
   2 ?   -0.0   0.1      0.12   2.4e+02       9      13 ..     104     108 ..     101     119 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.2e-05
  TIGR04165 34 vgeikCskCGyvFet 48
                ge +C +CGy++  
  MMETSP1061-20121228|853_1 74 EGEWVCKDCGYIYQR 88
               4899*********75 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.12
  TIGR04165   9 kCPkC 13 
                +CP+C
  MMETSP1061-20121228|853_1 104 RCPQC 108
                69*99 PP

>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.16   3.2e+02      53      62 ..      10      19 ..       2      48 .. 0.53
   2 ?    9.4   0.6   0.00014       0.3       3      33 ..      79     110 ..      77     122 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.16
  TIGR04104 53 lllllallll 62
               +ll+l+ l++
  MMETSP1061-20121228|853_1 10 VLLALVCLSF 19
               2222222122 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00014
  TIGR04104   3 CknCkekfsykellkslfsk.kkkikCpnCge 33 
                Ck C++ ++  e    +f      ++Cp+C+ 
  MMETSP1061-20121228|853_1  79 CKDCGYIYQRAECAGLYFEEqGVGFRCPQCSG 110
                *************98889888899******85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 710.01
//
Query:       MMETSP1061-20121228|852_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1196.42
//
Query:       MMETSP1061-20121228|856_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.30
# Mc/sec: 299.18
//
Query:       MMETSP1061-20121228|855_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 1120.56
//
Query:       MMETSP1061-20121228|858_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 448.76
//
Query:       MMETSP1061-20121228|851_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.6e-223  739.7   4.6   5.7e-223  739.4   3.2    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   4.7e-169  561.5   0.8   5.6e-169  561.2   0.5    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    8.5e-13   45.9   0.1    3.6e-12   43.8   0.0    1.8  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    4.1e-12   43.9   0.1      4e-10   37.4   0.0    2.4  2  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    7.1e-05   19.3   0.0    0.00017   18.1   0.0    1.6  2  TIGR01312 XylB: xylulokinase
    0.00015   18.8   0.9       0.06   10.2   0.0    3.3  3  TIGR01174 ftsA: cell division protein FtsA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  739.4   3.2  8.3e-226  5.7e-223       3     585 ..       9     604 ..       7     613 .. 0.94

  Alignments for each domain:
  == domain 1    score: 739.4 bits;  conditional E-value: 8.3e-226
  TIGR02350   3 iGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen.....evkvevedkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge.....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlk..eagdkleeeekekiekaveelkealkeedveek..ikakteelek 585
                +GidLGtt s+v v++ ++ ++ian +G+rttPs+vaf+++ erl+G++ak qa +n+ nt++ +krliGrk++   v++++k+ p+ v++        +v+ + e+k++ +eeis+++L+k+k+ aeaylG++v++av+tvPayfnd+qrqatkdaG+i+Gl+vlriinePtaaa+ayGldk+ +++++l+fdlGGGtfdvs+l +++g+fevk+taGdt+LGG+dfd++++dy++++fk+++  d+s ++ +l+rl+ a e+ak  Lss+++++i++  +       ++++ ++t+a+fe+l +d +++++ep++k+l+dak+s+  +de++lvGGstriP++q ++ ++++ ke  k++nPde+va Ga +q+++l+g      ++d+lLldvtPLsLg+et Ggv+t+li+rntt+P+kk+q+fst +dnqp v i+v+ Ger++++dn+ lg+f+L+gipp+PrG+pqi+v fdidanGil+vsa +k+tgke++itit+ ++ ls++eiermv eae++++ed  +++++ea+n ++++ y+++ +++  e+ +kl+ ++ke +++++ee  + l+++  +ek   ++k++ele 
  MMETSP1061-20121228|851_1   9 VGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTET-ERLIGDAAKSQAAMNATNTVFDAKRLIGRKFTdaAVQSDMKHWPFGVISGPGgapiiKVEYKGEEKTFKAEEISSMVLTKMKDIAEAYLGKEVKNAVVTVPAYFNDSQRQATKDAGSISGLNVLRIINEPTAAAIAYGLDKKGDEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLNDFKRRHKKDMSSNNRSLRRLRTACERAKRTLSSSTQAHIEIDSLF----DGIDFNATITKARFEDLNMDYFRKCMEPCTKVLSDAKISKAGVDEIVLVGGSTRIPKIQSMLSDFFNgKELCKAINPDEAVAFGATVQAAILSGAdknskLSDLLLLDVTPLSLGLETAGGVMTTLIKRNTTVPAKKTQTFSTYADNQPGVLIQVFEGERSMTKDNNILGKFNLDGIPPMPRGQPQIDVCFDIDANGILNVSALEKSTGKENKITITNdKGRLSQDEIERMVSEAEKYKAEDDANRNRIEAKNALENYCYSMKGSVSgpEMAEKLDPADKEALNAKIEETISWLDSNPSAEKeeYEEKQKELEG 604
                8***************************************9.******************************99667899**********9876533122334445899************************************************************************************************************************************************************************998764....35789***********************************************************9966************************9965667789******************************************************************************************************************972578*******************************************975578899***************9999988776552235555555554 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  561.2   0.5  8.2e-172  5.6e-169       2     561 ..       9     587 ..       8     612 .. 0.90

  Alignments for each domain:
  == domain 1    score: 561.2 bits;  conditional E-value: 8.2e-172
  TIGR01991   2 vGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakgemvrlktaqg....evtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil...kkagle.aelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepltd.ldPdevvAlGAalqadlLa...knkrkedllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsyg.LsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalk..adkdLlseeelkaikaaleklekaleed 561
                vGiDlGtt+s v + +++++e++ +++g+ + ps v ++e  +  +G++ak++aa + +nt+  +kRl+Gr  +d  v++ +++ p+ + +++g+ + +k++ +    +    e+s+ +L k+k  ae  lgke+k+av+tvPAYF+d qrqatkdA+ ++glnvlR++nePtaAA+AYGldk   e+ ++++DLGGGtFDvs+L +e+G+Fev+at+Gd++LGG+DfD+++++++l   k+ + +  + ++ + + l +a ++ak++L++++++++e+    +g d++a+++++++e+l  ++ +k +e+++++l+da+++++ ++e+vlvGGstr+p+++++++++F+ + l++ ++Pde vA GA++qa +L+   kn++  dllLlDv+PLsLGlet GG++  +i Rntt+P++k+q F ty D+q ++ i+v  GeR + +d+  L++F+L gippm+ G+ +i v f++Da+G+l+vsa ek+tg+e+ki++ +  g Ls++eie+m+ ++ k+ +eD + R + e+k   e+   +++ +++  + ++ l+ ++++a++a++e+  + l+++
  MMETSP1061-20121228|851_1   9 VGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTET-ERLIGDAAKSQAAMNATNTVFDAKRLIGRKFTDaaVQSDMKHWPFGVISGPGGAPIIKVEYKgeekTFKAEEISSMVLTKMKDIAEAYLGKEVKNAVVTVPAYFNDSQRQATKDAGSISGLNVLRIINEPTAAAIAYGLDKkGDEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLndfKRRHKKdMSSNNRSLRRLRTACERAKRTLSSSTQAHIEIDSlfDGIDFNATITKARFEDLNMDYFRKCMEPCTKVLSDAKISKAGVDEIVLVGGSTRIPKIQSMLSDFFNGKELCKaINPDEAVAFGATVQAAILSgadKNSKLSDLLLLDVTPLSLGLETAGGVMTTLIKRNTTVPAKKTQTFSTYADNQPGVLIQVFEGERSMTKDNNILGKFNLDGIPPMPRGQPQIDVCFDIDANGILNVSALEKSTGKENKITITNDKGrLSQDEIERMVSEAEKYKAEDDANRNRIEAKNALENYCYSMKGSVSgpEMAEKLDPADKEALNAKIEETISWLDSN 587
                8**************************************99.99***************************8877336788899999999999998877765433422455789********************************************************************977999************************************************9777444444477788888999999999******9999988886446******************************************************************98888744******************94333444459*****************************************************************************************************************987644*****************************9999999999998886335678899999999999988876666554 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.19   1.3e+02       4      36 ..       8      49 ..       5     100 .. 0.52
   2 !   43.8   0.0   5.2e-15   3.6e-12     100     323 ..     144     376 ..     116     385 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.19
  TIGR00904  4 dlgidlGtantlvyv..kgkG.ivlse......Psvvavekd 36
                +gidlGt+   v v  +++  i+ ++      Ps va +++
  MMETSP1061-20121228|851_1  8 SVGIDLGTTYSCVGVwqNDRVeIIANDqgnrttPSYVAFTET 49
               689999999877644114443133332222333566665444 PP

  == domain 2    score: 43.8 bits;  conditional E-value: 5.2e-15
  TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveep.tgsmvvdiGGGttevavisl.gGivvsks....irvaGdeldeaiikyi....rrky.n.lliGertaekikieiGsayaeendeeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllsket.klpvivaedpllavalGtG 323
                + +++vP+   + +r+a k++ + +G +   +i+ep aaai  +l  +   +  ++ d+GGGt +v+++++ +Gi   k+      ++G+++d+ +++y     +r++ + +   +r   ++++    a+ +  +++++  ++   l  G+  + ++++ +  +   +  ++ +e   ++l +++   a   v+  ivl GG + +  ++ +ls+   + + + a +p +ava G+ 
  MMETSP1061-20121228|851_1 144 NAVVTVPAYFNDSQRQATKDAGSISGLNVLRIINEPTAAAIAYGLDKKGDeKNVLIFDLGGGTFDVSLLTIeEGIFEVKAtagdTHLGGEDFDNRMVDYFlndfKRRHkKdMSSNNRSLRRLRTACERAKRTL-SSSTQAHIEIDSLFDGIDFNATITKARFEDLNMDYFRKCMEPCTKVLSDAKISKAG--VD-EIVLVGGSTRIPKIQSMLSDFFnGKELCKAINPDEAVAFGAT 376
                379******************************************998651566899************994599776662233689***********97333323331213344566677888877777764.56777777778999****************99***************998866654..44.59*****************97515667788899999999875 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   5.8e-13     4e-10      43     145 ..     124     232 ..     119     263 .. 0.84
   2 ?    3.8   0.0     0.011       7.4     188     226 ..     326     365 ..     292     375 .. 0.79

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 5.8e-13
  TIGR02529  43 veivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlql......kngavvdvGGGttGisilkkGkviysadeatGGthlsl 145
                + ++ ++kd +e  lG e+++a ++vP   ++++ +++ +    +Gl+vl++++ePtaaa +  l      kn  + d+GGGt  +s+l   + i+    ++G thl  
  MMETSP1061-20121228|851_1 124 SMVLTKMKDIAEAYLGKEVKNAVVTVPAYFNDSQRQATKDAGSISGLNVLRIINEPTAAAIAYGLdkkgdeKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 232
                56889*************************9999999999999****************999888333322356789*********************99999999865 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.011
  TIGR02529 188 khiekqkvkdlylvGGassfsefedvfekel.glevikpa 226
                  i k  v+++ lvGG++ +++++++++  + g+e+ k+ 
  MMETSP1061-20121228|851_1 326 AKISKAGVDEIVLVGGSTRIPKIQSMLSDFFnGKELCKAI 365
                578999*****************99998877566666655 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0      0.81   5.5e+02       1      26 [.       9      35 ..       9      41 .. 0.69
   2 !   18.1   0.0   2.5e-07   0.00017     388     444 ..     330     388 ..     284     401 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.81
  TIGR01312  1 lGiDlgTs.svKallvdekgeviasgs 26
               +GiDlgT+ s+  +  +++ e+ia+ +
  MMETSP1061-20121228|851_1  9 VGIDLGTTySCVGVWQNDRVEIIANDQ 35
               7*****982444455558888888766 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 2.5e-07
  TIGR01312 388 glkikeirliGGGaksevwrqiladilglevvvpe..eeegaalGaAilAaialgekdl 444
                   ++ei+l+GG ++ +  + +l d ++ +  +++   +e++a+Ga ++Aai +g +++
  MMETSP1061-20121228|851_1 330 KAGVDEIVLVGGSTRIPKIQSMLSDFFNGKELCKAinPDEAVAFGATVQAAILSGADKN 388
                345899*********************98766665459**************9985443 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   8.8e-05      0.06     166     214 ..     164     213 ..     141     231 .. 0.83
   2 !    4.3   0.0    0.0056       3.8     302     341 ..     320     359 ..     274     383 .. 0.75
   3 ?    0.4   0.1     0.086        59      73     116 ..     489     533 ..     479     536 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 8.8e-05
  TIGR01174 166 averaglevdnivlsslAsakav.LtedEkelGvvlidiGggttdiavyt 214
                a + +gl+v +i+ ++ A+a+a  L++   e  v++ d+Gggt d+++ t
  MMETSP1061-20121228|851_1 164 AGSISGLNVLRIINEPTAAAIAYgLDKKGDEKNVLIFDLGGGTFDVSLLT 213
                555689***************966999888889************99876 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0056
  TIGR01174 302 qkelkksglkeelaagivltGGaaqlkgikelaekvfdkk 341
                +k l++++++++    ivl GG +++  i+++ ++ f+ k
  MMETSP1061-20121228|851_1 320 TKVLSDAKISKAGVDEIVLVGGSTRIPKIQSMLSDFFNGK 359
                4666777775555566******************999865 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.086
  TIGR01174  73 vslsgahiksqnskgvvaikdk.evtqediervleaakavalped 116
                +++s  + ++ +++ +  ++dk  + q++ier++++a+  + ++d
  MMETSP1061-20121228|851_1 489 LNVSALEKSTGKENKITITNDKgRLSQDEIERMVSEAEKYKAEDD 533
                566666666677777777777789*************98887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.68
# Mc/sec: 1275.25
//
Query:       MMETSP1061-20121228|860_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-06   22.9   0.0      1e-05   22.6   0.0    1.1  1  TIGR00225 prc: C-terminal processing peptidase
  ------ inclusion threshold ------
      0.016   12.0   0.0      0.019   11.7   0.0    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.9e-09     1e-05      53     111 ..     101     163 ..      85     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 4.9e-09
  TIGR00225  53 iGiqvqmedd...eivivsplegsPAekag.ikpgDkIikvdgksvagmelddavelirGkkg 111
                +Gi  +++d     i + s+ e++ A++ g i+pgD++i v+ k+v g++ dda ++i   ++
  MMETSP1061-20121228|860_1 101 MGIVFEENDSefgGIFVQSLTEEGAAAQNGvIQPGDQLITVGTKNVSGLDFDDALAAIIESED 163
                466666666677789*************999***********************999865555 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.2e-06     0.019     363     430 ..     108     177 ..      68     180 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.2e-06
  TIGR02037 363 skeekkgvvvtkvkkkspaakag.lkkgdvilsvnqkevksvaelkkvleea..kkkervlllverggetl 430
                +++e  g+ v++ +++ +aa++g +++gd ++ v+ k+v+ + ++ ++l++   ++ e ++l + rg+++ 
  MMETSP1061-20121228|860_1 108 NDSEFGGIFVQSLTEEGAAAQNGvIQPGDQLITVGTKNVSGL-DFDDALAAIieSEDELTTLSLFRGSAKQ 177
                355668999999999888888886899999999999999876.4555555431034455788888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 980.49
//
Query:       MMETSP1061-20121228|857_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-12   42.5   0.7    8.1e-07   25.6   0.0    1.8  2  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
    4.6e-11   40.6   0.1    7.7e-11   39.9   0.0    1.3  1  TIGR02287 PaaY: phenylacetic acid degradation protein PaaY
    4.1e-10   37.4   4.9    2.7e-05   21.7   0.6    2.2  2  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    4.3e-05   21.1   1.0    0.00013   19.5   0.7    1.9  1  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
     0.0002   18.2   1.5    0.00038   17.3   0.6    1.8  1  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
      0.001   15.8   1.1     0.0045   13.7   0.5    2.0  2  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0024   15.8   2.7        1.3    6.9   0.0    2.9  3  TIGR01172 cysE: serine O-acetyltransferase
     0.0065   13.4   0.1      0.021   11.7   0.0    1.6  2  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase
     0.0088   13.2   0.5      0.037   11.1   0.2    1.9  2  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
  ------ inclusion threshold ------
      0.013   12.9   1.4       0.36    8.3   0.0    2.6  3  TIGR04016 WcaB: colanic acid biosynthesis acetyltransferase WcaB
      0.026   11.2   0.2      0.038   10.7   0.1    1.3  1  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
        0.7    7.5   5.3        1.6    6.4   0.8    2.7  3  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family


Domain annotation for each model (and alignments):
>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.1     2e-08   6.9e-06     646     695 .]     132     181 ..      77     181 .. 0.82
   2 !   25.6   0.0   2.4e-09   8.1e-07     160     221 ..     131     192 ..     116     224 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2e-08
  TIGR02353 646 vtigdgatlgpsaivlygavvgedavlgpdslvMkgeevpahtrWeGnPa 695
                 +i d +++g+++ vl gavv+ + vl+p ++v +   +p   +W GnPa
  MMETSP1061-20121228|857_1 132 CRIEDLVVIGEKSTVLEGAVVESNVVLEPGTVVPAYAYIPSGQKWGGNPA 181
                56777888888888888888888888888888888888888888888886 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 2.4e-09
  TIGR02353 160 svrvgddafvGtrsvldidtaiGdraqleasSalasgqsipegerWaGsPAqkvgaakrkvq 221
                s r++d +++G++s++  ++++     le++  ++    ip+g++W G PA+ v +     +
  MMETSP1061-20121228|857_1 131 SCRIEDLVVIGEKSTVLEGAVVESNVVLEPGTVVPAYAYIPSGQKWGGNPATFVANVTADEA 192
                56889999999999999999999999999999999999999999999999987754433333 PP

>> TIGR02287  PaaY: phenylacetic acid degradation protein PaaY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   2.3e-13   7.7e-11       6     168 ..      41     210 ..      37     230 .. 0.81

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 2.3e-13
  TIGR02287   6 gltpvvheeayvhpsavligdvivgkrvyvgplaslrgdfgr.iv......lkeganv....qdtcvmhgfpgqdtvveenghvghgailhgcrvgrnalvgmnavvmdgavigessivaasafvkagleiaaqvlvvgspakvvrelseqelawkkegtreyqdlaarslqtl 168
                g +p v +++++ p+a +ig+v    +  v   a +r d  + i       + eg+ v    +++ +  gfp + t +++   +g g +l++cr+    ++g  + v++gav+  + ++   + v a + i++ +   g pa  v +++ +e +  k+ + e ++ a+     l
  MMETSP1061-20121228|857_1  41 GQSPFVTNDTFIAPTASVIGEVTNWDQSSVWYGAVVRADSSHpITigftssVGEGSVVttlkKNATLKTGFPPT-TSIGHYVTIGGGCVLKSCRIEDLVVIGEKSTVLEGAVVESNVVLEPGTVVPAYAYIPSGQKWGGNPATFVANVTADEAEDIKRTSLETHQRAKEH---L 210
                778***********************************976424422222345776552222344566799975.66788999********************************************************************9988887777766544443...3 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.3e-06   0.00043     138     200 ..      46     112 ..      40     114 .. 0.85
   2 !   21.7   0.6   7.9e-08   2.7e-05     136     201 ..     115     181 ..     112     182 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.3e-06
  TIGR03570 138 igdfvhiapgatlsGgvkigegvfiGagAtviqg....vtIgkgavvGaGavVvkdipenavvvGvP 200
                + + + iap a + G+v+  +++ +  gA+v+ +    +tIg  + vG G+vV+   ++ ++ +G P
  MMETSP1061-20121228|857_1  46 VTNDTFIAPTASVIGEVTNWDQSSVWYGAVVRADsshpITIGFTSSVGEGSVVTTLKKNATLKTGFP 112
                567789*************************965444499*************98776666666665 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 7.9e-08
  TIGR03570 136 ceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaGavV..vkdipenavvvGvPa 201
                + ig++v+i  g++l   ++i++ v+iG ++tv++g  +++++v   G vV   + ip+++ + G+Pa
  MMETSP1061-20121228|857_1 115 TSIGHYVTIGGGCVLK-SCRIEDLVVIGEKSTVLEGAVVESNVVLEPGTVVpaYAYIPSGQKWGGNPA 181
                679*******999987.79********************************545689**********9 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.7   3.7e-07   0.00013     116     219 ..      89     192 ..      44     206 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.7e-07
  TIGR03532 116 GaeiGegtmi...dmnavlGg....raivGknvhiGaGavlaGvieppsakpvvieddvliGanavileGvkvGkGavvaaGaiv..iedvpentvvaGvpakvikevdektk 219
                 + +Geg+++     na+l +     + +G  v iG G+vl         k ++ied v+iG  + +leG  v +  v+  G++v     +p+    +G pa  + +v     
  MMETSP1061-20121228|857_1  89 TSSVGEGSVVttlKKNATLKTgfppTTSIGHYVTIGGGCVL---------KSCRIEDLVVIGEKSTVLEGAVVESNVVLEPGTVVpaYAYIPSGQKWGGNPATFVANVTADEA 192
                35678887662224577765422225678888888888887.........679*******************************9333579999999*****99998865433 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.6   1.1e-06   0.00038     116     173 ..     114     164 ..      94     197 .. 0.65

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-06
  TIGR01853 116 nvviganveiGenvkIgpgvvigddvkigdesviyanvviyeevklgknviiqagavi 173
                 ++      iG+ v Ig g+v+ + ++i d +vi  + ++ e + ++ nv++++g+v+
  MMETSP1061-20121228|857_1 114 TTS------IGHYVTIGGGCVL-KSCRIEDLVVIGEKSTVLEGAVVESNVVLEPGTVV 164
                444......4444444444443.23455555555555555555555555555555554 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.15        51     408     426 ..      82     100 ..      37     109 .. 0.80
   2 !   13.7   0.5   1.3e-05    0.0045     277     325 ..     111     160 ..      81     179 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.15
  TIGR01173 408 aPvkvgdgatiaaGstvtk 426
                 P+++g +  ++ Gs+vt+
  MMETSP1061-20121228|857_1  82 HPITIGFTSSVGEGSVVTT 100
                4899999999999999885 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.3e-05
  TIGR01173 277 legkvkigedvviGagsvikdsaikenakikays.vlekseigegasvGP 325
                +   ++ig+ v+iG g+v+k ++i++ ++i ++s vle++ +++++ + P
  MMETSP1061-20121228|857_1 111 FPPTTSIGHYVTIGGGCVLKSCRIEDLVVIGEKStVLEGAVVESNVVLEP 160
                446799************************87761567777777776666 PP

>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0039       1.3     113     155 ..      43      85 ..      35      87 .. 0.89
   2 ?    2.7   0.0     0.074        25     131     152 ..      83     104 ..      81     114 .. 0.76
   3 !    6.0   0.5    0.0071       2.4      95     146 ..     116     164 ..     108     181 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0039
  TIGR01172 113 hPtvkegvvigagakvLGnievgenakiGansvvlkdvpaeat 155
                 P v ++  i+  a+v+G+++  +++++  ++vv  d ++ +t
  MMETSP1061-20121228|857_1  43 SPFVTNDTFIAPTASVIGEVTNWDQSSVWYGAVVRADSSHPIT 85 
                58999*****************************999777666 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.074
  TIGR01172 131 nievgenakiGansvvlkdvpa 152
                +i++g  +++G +svv++   +
  MMETSP1061-20121228|857_1  83 PITIGFTSSVGEGSVVTTLKKN 104
                699************9864444 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0071
  TIGR01172  95 siyqgvtLGgtgkekgkRhPtvkegvvigagakvLGnievgenakiGansvv 146
                si + vt+Gg    k+ R   +++ vvig  ++vL    v +n+ +  ++vv
  MMETSP1061-20121228|857_1 116 SIGHYVTIGGGCVLKSCR---IEDLVVIGEKSTVLEGAVVESNVVLEPGTVV 164
                666778888877766655...7778888888888888788888777777776 PP

>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.1e-05     0.021     258     362 ..      28     146 ..      23     148 .. 0.81
   2 !    9.1   0.0   0.00038      0.13     300     336 ..     123     160 ..     112     170 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.1e-05
  TIGR02091 258 dlvseepeldlydkkwpiytkeeqlppakfveskeakvkdslvaegcvisgatvenSvlgervriesesevedsvvlge.................vkigenakikkaiidknvrigegvki 362
                +++s++++   +  ++p+ t++++++p+  v  + ++ ++s v  g+v+++ + +   +g  + ++++s v+     ++                 v+ig ++++k + i+  v+ige+ ++
  MMETSP1061-20121228|857_1  28 EIISRHRPKMTFLGQSPFVTNDTFIAPTASVIGEVTNWDQSSVWYGAVVRADSSHPITIGFTSSVGEGSVVTTL---KKnatlktgfppttsighyVTIGGGCVLKSCRIEDLVVIGEKSTV 146
                5666665555566688999********9999988778999**********988888889999999999887532...112345559*******************************99876 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00038
  TIGR02091 300 vaegcvisgatvenS.vlgervriesesevedsvvlge 336
                ++ gcv++++++e+  v+ge++++ +++ ve+ vvl+ 
  MMETSP1061-20121228|857_1 123 IGGGCVLKSCRIEDLvVIGEKSTVLEGAVVESNVVLEP 160
                78999999999998526799999999999999999975 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.2   0.00011     0.037      31     152 ..      46     164 ..      36     178 .. 0.65
   2 !    8.8   0.0   0.00056      0.19       4      72 ..     131     199 ..     128     211 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
  TIGR01852  31 igegvelkshvviegattiGentkvfpgAviGeepQdlkykgekteleiGdn.ntirEfvtinrgtkegkgvtsiGdnnlllaysHvaHdcvvgnnvvlannatlaGhvevgdlaiigglvav 152
                +++++ +++ + + g++t  +++ v+ gAv+  ++ +    g ++++  G+  +t++  +t+++g       tsiG+ +  +    v   c++++ vv+++++t+     v++ +++   + v
  MMETSP1061-20121228|857_1  46 VTNDTFIAPTASVIGEVTNWDQSSVWYGAVVRADSSHPITIGFTSSVGEGSVvTTLKKNATLKTGFPPT---TSIGHYVT-IGGGCVLKSCRIEDLVVIGEKSTVLEGAVVESNVVLEPGTVV 164
                566777777777777777777777777777777777777777777776666424577777777777666...77776544.445556677777777777776665555556666666655555 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00056
  TIGR01852   4 taiieegaelgedveigpfavvgkevkigegvelkshvviegattiGentkvfpgAviGeepQdlkykg 72 
                +  ie+ + +ge+ ++ + avv+++v+++ g+++ ++++i +  + G n   f   v  +e  d+k + 
  MMETSP1061-20121228|857_1 131 SCRIEDLVVIGEKSTVLEGAVVESNVVLEPGTVVPAYAYIPSGQKWGGNPATFVANVTADEAEDIKRTS 199
                567899999999999999999999999999999999999999999998888887777777777776555 PP

>> TIGR04016  WcaB: colanic acid biosynthesis acetyltransferase WcaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.79   2.7e+02      93     125 ..      44      76 ..      39      83 .. 0.80
   2 ?    2.1   0.1     0.084        29     111     127 ..      84     100 ..      75     111 .. 0.80
   3 ?    8.3   0.0    0.0011      0.36     112     142 ..     116     146 ..     112     149 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.79
  TIGR04016  93 pvigngvelganvillgditignnvtigagsvv 125
                p + n+  +     ++g++t  ++ ++  g+vv
  MMETSP1061-20121228|857_1  44 PFVTNDTFIAPTASVIGEVTNWDQSSVWYGAVV 76 
                777788888888889999999999999988887 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.084
  TIGR04016 111 itignnvtigagsvvld 127
                itig   ++g gsvv  
  MMETSP1061-20121228|857_1  84 ITIGFTSSVGEGSVVTT 100
                9************9964 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0011
  TIGR04016 112 tignnvtigagsvvldsipdnalvvgekarv 142
                +ig  vtig g v+  +  ++ +v+gek+ v
  MMETSP1061-20121228|857_1 116 SIGHYVTIGGGCVLKSCRIEDLVVIGEKSTV 146
                69*********99988888999999***976 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00011     0.038     284     325 ..     116     157 ..      62     170 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00011
  TIGR01208 284 yigpytsigegvvikdaeveksivldesviegvekriedsvi 325
                 ig+y++ig g v+k++ +e+ +v+ e + +   + +e+ v+
  MMETSP1061-20121228|857_1 116 SIGHYVTIGGGCVLKSCRIEDLVVIGEKSTVLEGAVVESNVV 157
                488888888888888888888888777766665555554444 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1       0.1        35     126     152 ..      83     109 ..      66     116 .. 0.63
   2 ?    5.0   0.2     0.012       4.2      21      51 ..     116     146 ..     102     152 .. 0.69
   3 ?    6.4   0.8    0.0046       1.6     111     144 ..     117     155 ..     113     215 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.1
  TIGR03308 126 gvtiGnGavvaagavvtkdvasytiva 152
                 +tiG  + v+ g+vvt      t+ +
  MMETSP1061-20121228|857_1  83 PITIGFTSSVGEGSVVTTLKKNATLKT 109
                367888888888888887655555555 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.012
  TIGR03308  21 klGrytevgertrleevalddysyvereadi 51 
                ++G y+ +g  ++l+ + ++d   + +++ +
  MMETSP1061-20121228|857_1 116 SIGHYVTIGGGCVLKSCRIEDLVVIGEKSTV 146
                5677777777777777777776666655554 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0046
  TIGR03308 111 iGhdvWiGhGavilPg.....vtiGnGavvaagavvtkd 144
                iGh v iG G v++       v iG+ + v  gavv  +
  MMETSP1061-20121228|857_1 117 IGHYVTIGGGCVLKSCriedlVVIGEKSTVLEGAVVESN 155
                666666666655443211111334443333333443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 809.30
//
Query:       MMETSP1061-20121228|859_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 928.81
//
Query:       MMETSP1061-20121228|861_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-25   86.6   0.0    1.2e-24   84.8   0.0    1.9  1  TIGR00177 molyb_syn: molybdenum cofactor synthesis domain
      4e-18   63.4   0.1    3.3e-17   60.5   0.0    2.2  2  TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B


Domain annotation for each model (and alignments):
>> TIGR00177  molyb_syn: molybdenum cofactor synthesis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   5.6e-28   1.2e-24       4     145 ..     408     578 ..     405     580 .. 0.89

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 5.6e-28
  TIGR00177   4 vavisvgdelle........................egqieDtngallaalleeaglevkkvelgivpDdkeeikeilrkave.........eadvvlttGGtGvgerDvtkealaellekelegfeelfrklsle.vpt....vlsrpgkpavagvrestlifnLPGspkavkvtfevl 145
                 ++++v+d++++                        +++  + n+ + ++  +  +le   +e++ivpDd e i++ l ++ +         ++d++lttGGtG+++rDvt+ea+ ++le+ +eg   l+   +l+ +++     lsr     +ag+r++tl++nLPG+p+av++ + v+
  MMETSP1061-20121228|861_1 408 LGILTVSDRAASgeyatgdlsgpavreavetviasnSNKKSNNNNNTNSNNSNTTILER--IETAIVPDDGESIRQKLLEWTNtsssssscsRVDMILTTGGTGFSPRDVTPEATNSVLEQSCEG---LMAFCGLQtIGDqplaALSRG----TAGIRNGTLVANLPGNPQAVRELVPVF 578
                68999999999999999999999999999999998877777777777777777777774..89******************988888899999*******************************9...778888877888889******....*********************988766 PP

>> TIGR02667  moaB_proteo: molybdenum cofactor biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.038        78       5      32 ..     406     433 ..     403     451 .. 0.66
   2 !   60.5   0.0   1.6e-20   3.3e-17      37     139 ..     465     573 ..     430     579 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.038
  TIGR02667   5 laiavltvsdsrteeddtsGqvlverlk 32 
                 ++ +ltvsd+    +  +G+    +++
  MMETSP1061-20121228|861_1 406 FSLGILTVSDRAASGEYATGDLSGPAVR 433
                67889****9988766555554333333 PP

  == domain 2    score: 60.5 bits;  conditional E-value: 1.6e-20
  TIGR02667  37 elaeraivkddlyqiraqvseWiad.......eevdvilitGGtGltgrdvtpealeplldkkveGfgelfraisyeeiGtstiq..sralagvanktlvfvlPGstgavrt 139
                e  e aiv+dd + ir+++ eW++        ++vd+il+tGGtG+  rdvtpea +++l+++ eG+ ++     ++ iG   +   sr +ag+ n+tlv  lPG ++avr+
  MMETSP1061-20121228|861_1 465 ERIETAIVPDDGESIRQKLLEWTNTsssssscSRVDMILTTGGTGFSPRDVTPEATNSVLEQSCEGLMAF---CGLQTIGDQPLAalSRGTAGIRNGTLVANLPGNPQAVRE 573
                445679****************975222222246********************************7654...577888877553339**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1742.26
//
Query:       MMETSP1061-20121228|865_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0086   13.7   0.0     0.0096   13.5   0.0    1.3  1  TIGR00336 pyrE: orotate phosphoribosyltransferase
  ------ inclusion threshold ------
      0.035   11.3   0.0        2.2    5.4   0.0    2.1  2  TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit


Domain annotation for each model (and alignments):
>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.7e-06    0.0096     104     158 ..      38      92 ..      11      99 .] 0.84

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.7e-06
  TIGR00336 104 elkegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsaeeevek 158
                e +++++  v+e v+  G++ + a e+++ ++ +v +++    +    a e ++ 
  MMETSP1061-20121228|865_1  38 ERLKDNRYFVLEAVTHNGKAFRYASERLKDNRDIVLAAVTNYGYALGFASERLKD 92 
                668899*****************************99998777776666666655 PP

>> TIGR02852  spore_dpaB: dipicolinic acid synthetase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0011       2.2     101     132 ..       3      34 ..       1      47 [. 0.82
   2 ?    4.4   0.0    0.0023       4.7     109     133 ..      61      87 ..      43      94 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0011
  TIGR02852 101 tdspvlmaakatlrnnkPvvlaistndalGln 132
                +d + l  a    ++++ +vla  tn++l l+
  MMETSP1061-20121228|865_1   3 NDGSALQYASEGWKDDRDIVLAAVTNNGLALE 34 
                677777778888899**************986 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0023
  TIGR02852 109 akatlrnnkPvvlaistnd..alGlna 133
                a  +l++n+ +vla  tn   alG+ +
  MMETSP1061-20121228|865_1  61 ASERLKDNRDIVLAAVTNYgyALGFAS 87 
                67789*************722466655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 544.46
//
Query:       MMETSP1061-20121228|862_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 859.40
//
Query:       MMETSP1061-20121228|864_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.11s 00:00:00.17 Elapsed: 00:00:00.20
# Mc/sec: 204.58
//
Query:       MMETSP1061-20121228|867_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         6  (0.0014627); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.19s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1061-20121228|869_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|870_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.1    3.9  13.4          4    3.5   9.3    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        6.4    2.8  13.6        7.7    2.5   9.4    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   9.3     0.002         4     318     421 ..      81     182 ..      57     209 .. 0.34

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.002
  TIGR02442 318 eqekeekkleekkeeakpdeekedeseekekeeskkqe.eeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskar.argasGrrsktrsdkrgr 421
                + +++++++++++ ++ +++  + +s+++e++++++++ ++++ + d++ee ++ee +++++   +++  + ++++r+       ++  +++  +r+k++s+++++
  MMETSP1061-20121228|870_1  81 P-RSDQQERKQTSDNPYDNPYDPYDSNNSESNSDNNSSdSDNDSNADSEEEYNSEESNQNNN---NRNKRSFNNPCRIPGHDHDWSEcPKNRYSKRNKSNSNNNST 182
                2.222233333333333333333332121211111111111111222222222222222211...22222222222222222222222233333333333322222 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   9.4    0.0038       7.7     179     294 ..      84     190 ..      14     234 .. 0.44

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0038
  TIGR00934 179 ksakrddfqeklfsGelvkrdeqdsvh.sdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdees 294
                 +++r++++++ +    +  d+++s   sd+ns+d+++d +ad++ +  +++es++++++ +  s +   r+ ++d d ++  +      +k +++++              s +es
  MMETSP1061-20121228|870_1  84 DQQERKQTSDNPYDNPYDPYDSNNSESnSDNNSSDSDNDSNADSEEE-YNSEESNQNNNNRNKRSFNNPCRIPGHDHDWSECPKNRYSKRNKSNSNNNSTAS---------ASSNES 190
                22223333333333333333333322202222222222222222222.223333333333333333333333333333333333333333333322222222.........222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 718.61
//
Query:       MMETSP1061-20121228|871_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 728.81
//
Query:       MMETSP1061-20121228|863_1  [L=874]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-234  778.2   0.0   3.3e-223  740.8   0.0    2.0  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
   2.5e-139  463.7   0.4   3.8e-138  459.8   0.3    2.5  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    6.1e-22   75.9   0.0    8.6e-20   68.9   0.0    2.3  2  TIGR02065 ECX1: exosome complex exonuclease 1
    5.3e-07   26.9   0.3    0.00028   18.0   0.0    3.4  3  TIGR01966 RNasePH: ribonuclease PH
    0.00072   16.0   0.0     0.0012   15.3   0.0    1.2  1  TIGR00717 rpsA: ribosomal protein S1
  ------ inclusion threshold ------
      0.024   10.8   0.0       0.04   10.0   0.0    1.2  1  TIGR02063 RNase_R: ribonuclease R


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  740.8   0.0  4.8e-226  3.3e-223       4     613 ..     109     726 ..     106     730 .. 0.96
   2 !   35.5   0.0   1.2e-12   8.5e-10     616     688 ..     751     834 ..     745     835 .. 0.83

  Alignments for each domain:
  == domain 1    score: 740.8 bits;  conditional E-value: 4.8e-226
  TIGR03591   4 greltletGklarqadgavvvklgdtvvlvtvvaakeakegvdflPLtvdyqeklyaaGkipGgffkREgrpsekeiLtsRliDRpiRPlFpegfrnevqvvatvlsvdeenepdilaligasaalaisdiPfegpvaavrvglidg..eyvlnptveelekskldlvvagtkeavlmvEseakelseeemleaiefgheeikevieaieelakevgkekleveakeedeelkkkveelaeekelkealkie.ekqereealeevkeevleelaeeeeeeeeeeeekeikellkelekklvRerilkekkRidgRklkeiRpisievgvlpraHGsalFtRGetqalvvvtLgtekdeqiidelegeekkrfllhYnfPpysvgevgrvrspkRReiGHgkLaeralkavlPseeefpYtiRvvseileSnGSsSmasvCgssLalmdaGvpikapvaGiamGLikeede.....kvavLsDilgdEDhlGDmDfKvaGtekgitalqmDiKiegiteeilekaleqakegRlhiLdkmekvisepreelseyaPrietikinkdkireviGkgGkvireiieetg.akidieddGtvkiaaadkeaaekakklieeit 613
                ++ +++e Gk+ rqa g+v+++ gdtv+ +t+  ++++keg +flPL+v++qe++ ++G  +Gg+ kR+grp+e+e+Lt+RliDRp+RPl ++g+r+e+q+++ v+s+d + ++d la++++s al +s+iP +++vaa+ vg+ ++  +++lnpt ee++ks l+l+vagtk+avlm+E+ a+ l+ee+m+ a++fgh++ik ++ea+ee+ + +gkek   +  ++ e l++ v++l++ +++++++++  +k+++   ++ +++e++e+l+++e+e+  e+ + +ik+++k+l  + +  r  ++++R dgR+l+eiR++++e+g+lp++HGsalFtRGetqa++++tLg + ++q+id+++g+e+krf+l+Y+fPp +vge+grv++p+RReiGHg+Laeral++ lPsee+fpYtiRv s i+eS GSsSmasvCg++Lalmd+Gvpik+pvaGiamG++  ++e     +  +LsDilg+ED+lG mDfKvaG ++git++q+DiK eg++ + +e+aleqa+ gRlhiLdkm++v+++pre l +++P++  ++i+++ i++viG+gGk+ir+iie+++ +++d++ddG+v+i++ +++++++a + +++++
  MMETSP1061-20121228|863_1 109 ENPIVIESGKIGRQAAGSVTLQRGDTVLYATAACDDSPKEGLNFLPLSVEHQERFSSVGMTSGGYNKRDGRPAEHEVLTCRLIDRPLRPLIADGWRHETQLLSWVMSYDGKRSADPLAIVASSTALFLSEIPLTKAVAAAMVGYDKEtdSFLLNPTHEEMAKSPLQLIVAGTKDAVLMIEGAADFLTEETMVRAVTFGHDAIKVICEAVEEFGTVAGKEKNFETLIKAPEGLQQVVDDLMT-EKVDAMYALGgTKTTQGPVMSVLQKELVETLTSSEDEDAPEYAAGDIKTAFKDLLCRRMFVRAQETGQRCDGRALDEIRHLTMETGFLPKTHGSALFTRGETQAIATTTLGDSGMRQKIDKIDGTEEKRFYLQYTFPPSCVGETGRVGAPGRREIGHGNLAERALAPTLPSEEDFPYTIRVESLITESHGSSSMASVCGGCLALMDSGVPIKNPVAGIAMGMLLGDKEgisdeNALILSDILGTEDALGTMDFKVAGDRTGITTFQLDIKCEGLSLQTMERALEQARVGRLHILDKMDEVLANPREVLPDTVPKLARFTIEPSSIGKVIGPGGKQIRAIIEDYElTNMDVQDDGNVQISSFKQDKLTDAEAFVKKLV 726
                56799*******************************************************************************************************************************************975559*******************************************************************987666666788999999999998.6677777777699999999***************999999****************9999999**************************************************************************************************************************************************************998777667777899*********************************************************************************************************998468*************************99986 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 1.2e-12
  TIGR03591 616 vevgkvyegkvvkiadfgafvellpgk........dglvhiSelaeervekvedvlk...egdevkvkvleidkkgrvklsrka 688
                +  g+vy+gk++ i +fg+f+e++pg         +gl+h+Selaee+v++ e +++     +e+ v  + i+k+g+ +lsrk+
  MMETSP1061-20121228|863_1 751 PVEGQVYKGKITGIHPFGVFLEFMPGAedgstpglEGLCHVSELAEEHVRSCEGYVRsvlNTEEFDVVYMGINKSGKRSLSRKE 834
                6679*******************98752233333379**************9998762225899******************97 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  459.8   0.3  5.6e-141  3.8e-138      16     671 ..     109     776 ..     102     832 .. 0.84

  Alignments for each domain:
  == domain 1    score: 459.8 bits;  conditional E-value: 5.6e-141
  TIGR02696  16 trtirfetgrlarqadgsvvaylddetmllsattaskkpkdeldffpltvdveermyaagkipgsffrregrpseeailacrlidrplrpsfvkglrnevqvvvtvlslnpdelydvvainaasastqlaglpfsgpiggvrlalied.gqwvafptveeleeavfdlvvagrvledgdvaimmveaeatektlelvkggakapteevvaegleaakpfikvlcraqadlaekaaketeefplfldyeddvyeaveeavkdelekvltiadkqere.eaedelkekvkeklaeele.....erekelsaaykavlkklvrervlkekvridgrgltdirslsaeveviprvhgsalfergetqilgvttlnmlkmeqqidslspvtskrylhhynfppystgetgrvgspkrreighgalaeralvpvlpsreefpyairqvsealgsngstsmgsvcastlsllnagvplkapvagiamglisdevdg..etryvaltdilgaedalgdmdfkvagtrefvtalqldtkldgipaevlaealkqakdarlaildvlaeaidspdel.setaprviavkipvdkigevigpkgkvinsiqdetg.aeisieddgtvyigaadgdsaeaaraainaia................npt....lpevgerflgtvvkttafgafvsllpg 671
                ++ i +e+g++ rqa+gsv+    ++t+l +++++ ++pk+ l+f+pl+v+ +er  + g   g + +r+grp+e+ +l+crlidrplrp + +g r e q++  v+s + ++  d +ai a+s++  l+ +p++  ++   +   ++ + ++  pt+ee++++ ++l+vag     +d a++m+e            g a   tee++ + +   +  ikv+c+a +++ + a+ke ++f+  ++  +   ++v++++++++ +++   + +  +   ++ l++++ e+l+++ +      +  ++++a+k +l + +  r  + + r dgr l +ir+l+ e   +p+ hgsalf rgetq +  ttl    m q+id +  +++kr+  +y fpp  +getgrvg+p rreighg+laeral p lps e+fpy+ir  s    s gs+sm svc   l+l+++gvp+k+pvagiamg++  + +g  + + + l+dilg+edalg mdfkvag r  +t++qld k +g+  + +  al+qa+  rl+ild ++e++++p e+  +t p++ + +i    ig+vigp gk i +i ++   +++ ++ddg v i++ + d+   a a +  ++                 p+    +p  g+ + g +    +fg f+ ++pg
  MMETSP1061-20121228|863_1 109 ENPIVIESGKIGRQAAGSVTL-QRGDTVLYATAACDDSPKEGLNFLPLSVEHQERFSSVGMTSGGYNKRDGRPAEHEVLTCRLIDRPLRPLIADGWRHETQLLSWVMSYDGKRSADPLAIVASSTALFLSEIPLTKAVAAAMVGYDKEtDSFLLNPTHEEMAKSPLQLIVAGT----KD-AVLMIE------------GAADFLTEETMVRAVTFGHDAIKVICEAVEEFGTVAGKE-KNFETLIKAPEGLQQVVDDLMTEKVDAMYALGGTKTTQgPVMSVLQKELVETLTSSEDedapeYAAGDIKTAFKDLLCRRMFVRAQETGQRCDGRALDEIRHLTMETGFLPKTHGSALFTRGETQAIATTTLGDSGMRQKIDKIDGTEEKRFYLQYTFPPSCVGETGRVGAPGRREIGHGNLAERALAPTLPSEEDFPYTIRVESLITESHGSSSMASVCGGCLALMDSGVPIKNPVAGIAMGMLLGDKEGisDENALILSDILGTEDALGTMDFKVAGDRTGITTFQLDIKCEGLSLQTMERALEQARVGRLHILDKMDEVLANPREVlPDTVPKLARFTIEPSSIGKVIGPGGKQIRAIIEDYElTNMDVQDDGNVQISSFKQDKLTDAEAFVKKLVgggggaggggggkrepRPQysgpEPVEGQVYKGKITGIHPFGVFLEFMPG 776
                566889************976.5789999999999********************************************************************************************************999998766699********************94....33.666666............4555667888888888888899**********9999887.579999999999****************9988766665245566666677777655544444455667888888887777777777899************************************************************************************************************************************************************999888657788999******************************************************************99725689*************************9988865389*************9999888877777665422222222222222111222222355566666666666677777766665 PP

>> TIGR02065  ECX1: exosome complex exonuclease 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0     0.005       3.4     127     221 ..     221     316 ..     104     320 .. 0.71
   2 !   68.9   0.0   1.3e-22   8.6e-20       4     199 ..     413     620 ..     410     652 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.005
  TIGR02065 127 gtrvasltaaslaladaGipmrdlvvgvavGkvdgkvvldlseeedkyGeadlPlailPklkeitllqldGd.ltedefkqaldlavkgikkvyei 221
                ++   +++a+s al  + ip+   v++  vG  +++  + l+ + +++ ++ l l ++ + + + ++    d lte+ + +a+ +   +ik + e 
  MMETSP1061-20121228|863_1 221 SADPLAIVASSTALFLSEIPLTKAVAAAMVGYDKETDSFLLNPTHEEMAKSPLQLIVAGTKDAVLMIEGAADfLTEETMVRAVTFGHDAIKVICEA 316
                44556899**********************97665555555555555666666665555555555554443347999999***9999999998775 PP

  == domain 2    score: 68.9 bits;  conditional E-value: 1.3e-22
  TIGR02065   4 ledglredGrkpdelrpvkievGvlkradGsallelGatkivaav.yGPreahprhlqkpd...ravlrvrynmapfsvder.krPaPdrreieiskvirealepailve.kfPrtaidvfvevlqadagtrvasltaaslaladaGipmrdlvvgvavGkv........dgk...vvldlseeedkyGeadlPlailPklkeitllqldGdl 199
                +e g+r dGr+ de+r++ +e G l ++ Gsal+  G+t+++a+   G   ++++   k+d      + ++y   p  v e  +  aP rrei    + + al p++  e  fP t i v   + ++ +++ +as+    lal d+G+p+++ v+g+a+G +        d +   ++ d+  +ed  G  d+ +a   +   it +qld + 
  MMETSP1061-20121228|863_1 413 QETGQRCDGRALDEIRHLTMETGFLPKTHGSALFTRGETQAIATTtLGDSGMRQKI-DKIDgteEKRFYLQYTFPPSCVGETgRVGAPGRREIGHGNLAERALAPTLPSEeDFPYT-IRVESLITESHGSSSMASVCGGCLALMDSGVPIKNPVAGIAMGMLlgdkegisD-EnalILSDILGTEDALGTMDFKVA--GDRTGITTFQLDIKC 620
                6789*************************************997526777776664.444411155667899999999977615578********************875168876.88999999**********************************976333222221.133255699999*****9999887..577889999988653 PP

>> TIGR01966  RNasePH: ribonuclease PH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.13        88      18      44 ..     118     144 ..     104     148 .. 0.81
   2 !    4.1   0.0    0.0073         5     139     213 ..     226     299 ..     216     319 .. 0.74
   3 !   18.0   0.0   4.1e-07   0.00028       1      44 [.     418     461 ..     418     558 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.13
  TIGR01966  18 eflkhaeGsvlvevGdtkvlctasvee 44 
                +  ++a+Gsv ++ Gdt +  ta++++
  MMETSP1061-20121228|863_1 118 KIGRQAAGSVTLQRGDTVLYATAACDD 144
                456899***********9999999875 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0073
  TIGR01966 139 aikklekkkvlkeeplkeavaavsvGiveeeavldldyeedsaaevdlnvvmtesg.elvevqgtaeeepfsreel 213
                ai   +++  l+e pl++avaa  vG  +e+  + l+ + +  a++ l +++++   +++ ++g a+   +++e +
  MMETSP1061-20121228|863_1 226 AIVASSTALFLSEIPLTKAVAAAMVGYDKETDSFLLNPTHEEMAKSPLQLIVAGTKdAVLMIEGAAD--FLTEETM 299
                5555666778999****************99999999999999999998887765514556777664..3445555 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 4.1e-07
  TIGR01966   1 rsdGrkedqlrpvklereflkhaeGsvlvevGdtkvlctasvee 44 
                r dGr+ d++r++++e+ fl +++Gs l + G+t+ + t+++ +
  MMETSP1061-20121228|863_1 418 RCDGRALDEIRHLTMETGFLPKTHGSALFTRGETQAIATTTLGD 461
                88***********************************9998755 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.7e-06    0.0012     272     336 ..     753     827 ..     749     837 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.7e-06
  TIGR00717 272 vgkkikgkvtnladyGvfveie....e....giEGlvhvsElsWekkns..kPskvvkvGdevevkvleideerr 336
                +g++ kgk+t + ++Gvf+e +    +    g+EGl hvsEl+ e+  s       v   +e +v+ + i++  +
  MMETSP1061-20121228|863_1 753 EGQVYKGKITGIHPFGVFLEFMpgaeDgstpGLEGLCHVSELAEEHVRSceGYVRSVLNTEEFDVVYMGINKSGK 827
                68999***************97333213333699********855433300223333445666777777766544 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   5.8e-05      0.04     629     665 ..     754     797 ..     752     803 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 5.8e-05
  TIGR02063 629 GeefegvissvtsfGlFveL.......eentieGLvhissLkdd 665
                G++++g i+++  fG+F+e+        +   eGL h+s+L ++
  MMETSP1061-20121228|863_1 754 GQVYKGKITGIHPFGVFLEFmpgaedgSTPGLEGLCHVSELAEE 797
                99*****************954443222446899*****99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.53
# Mc/sec: 2176.57
//
Query:       MMETSP1061-20121228|866_1  [L=724]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       386  (0.0941004); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.97u 0.18s 00:00:01.14 Elapsed: 00:00:00.98
# Mc/sec: 975.10
//
Query:       MMETSP1061-20121228|868_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1486.10
//
Query:       MMETSP1061-20121228|872_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-06   24.0   0.0      0.031   11.1   0.0    2.8  3  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
  ------ inclusion threshold ------
      0.014   12.2   0.0       0.63    6.7   0.0    2.7  3  TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   1.5e-05     0.031      58     147 ..     162     252 ..     123     268 .. 0.86
   2 ?   -3.1   0.0      0.32   6.6e+02     264     297 ..     338     371 ..     335     375 .. 0.82
   3 !    9.6   0.0   4.6e-05     0.095      20      74 ..     401     459 ..     384     469 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.5e-05
  TIGR03866  58 casdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianeddalvtvvdiekrkvlaeidvGvePeGla..vsPdgklvvntsettn 147
                + s + ++ + d++t +   +l    d e + ++p+g ++ ++   d ++ +  i  ++ + ++ vG e    a   sPdgk+++++s    
  MMETSP1061-20121228|872_1 162 VGSYDGSIIIYDPDTGTQRLKLEGPSDVEWMSFHPKGGTVLLTGSGDGTLWMFHIPLNRCM-QVFVGHEQAVTAgcFSPDGKWALSASSDGT 252
                456778999**********************************************998765.899****87665448********9987655 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.32
  TIGR03866 264 laftpdekkllttnGvsndvsvidvaaekviksi 297
                + f+p + +  +t Gv + + + d+a++   + i
  MMETSP1061-20121228|872_1 338 VGFSPAQPNWCATGGVDGKLKIWDLARDGQCRQI 371
                5689999999999999999999999987766655 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 4.6e-05
  TIGR03866  20 dntisvidletlevvktlkvGerPr....Gitlskdgkllyvcasdsdavqvldaetee 74 
                + t+ v d+ + ++ +tl+ G+  +     i++ ++g+ ++v+asd++av+v++++ ++
  MMETSP1061-20121228|872_1 401 SGTVRVWDARNGNLLQTLTSGSTDQindmDIHFLPNGSAVIVTASDDNAVRVFELDVNA 459
                34566666666666666666654322222566667777777777777777776665544 PP

>> TIGR02800  propeller_TolB: Tol-Pal system beta propeller repeat protein TolB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0    0.0016       3.3     217     292 ..     169     243 ..     160     250 .. 0.73
   2 ?    6.7   0.0   0.00031      0.63     229     262 ..     224     256 ..     218     264 .. 0.85
   3 ?    1.5   0.0     0.012        24     241     268 ..     432     459 ..     414     469 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0016
  TIGR02800 217 iyvqdlatgkrekvasfkginvaPafsPDGkklavslskdGnpdiYvmdlaskqltrltkspgidtePsfspDgks 292
                i ++d  tg+++   + +  +   +f P G +++++ s dG+   + + l+   +  + ++++  t + fspDgk+
  MMETSP1061-20121228|872_1 169 IIIYDPDTGTQRLKLEGPSDVEWMSFHPKGGTVLLTGSGDGTLWMFHIPLNRCMQVFVGHEQAV-TAGCFSPDGKW 243
                6666666776666666666666678888888888888888888888888887766666666665.88888888886 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00031
  TIGR02800 229 kvasfkginvaPafsPDGkklavslskdGnpdiY 262
                +++ +++ + a +fsPDG k a+s s+dG+  i+
  MMETSP1061-20121228|872_1 224 VFVGHEQAVTAGCFSPDG-KWALSASSDGTLRIW 256
                5667888999*******8.579*******99987 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.012
  TIGR02800 241 afsPDGkklavslskdGnpdiYvmdlas 268
                 f P+G+ ++v+ s d    ++ +d++ 
  MMETSP1061-20121228|872_1 432 HFLPNGSAVIVTASDDNAVRVFELDVNA 459
                599******************9999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 2013.90
//
Query:       MMETSP1061-20121228|874_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.56    8.2   7.5        2.2    6.2   0.5    3.5  3  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.2      0.02        84      85     107 ..       9      32 ..       3      38 .. 0.68
   2 ?    6.2   0.5   0.00053       2.2      94     115 ..      75      96 ..      43     104 .. 0.80
   3 ?    2.8   0.0    0.0061        25      94     114 ..     171     191 ..     157     196 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.02
  TIGR00880  85 rsvalglls.agialgpilGpllG 107
                ++  lg+++ + + lgp+l pllG
  MMETSP1061-20121228|874_1   9 LGTTLGTMLgLLLLLGPLLTPLLG 32 
                555566554145678999999988 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00053
  TIGR00880  94 agialgpilGpllGavlaqalg 115
                +g+ lg++lG+llGa+l++ lg
  MMETSP1061-20121228|874_1  75 LGTKLGVLLGLLLGALLGTSLG 96 
                6888999999999999987766 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.0061
  TIGR00880  94 agialgpilGpllGavlaqal 114
                +g+ lg +lG+llG++l++ l
  MMETSP1061-20121228|874_1 171 LGTKLGDLLGLLLGSLLGSSL 191
                678889999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 963.52
//
Query:       MMETSP1061-20121228|875_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 742.44
//
Query:       MMETSP1061-20121228|877_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.10s 00:00:00.18 Elapsed: 00:00:00.18
# Mc/sec: 476.63
//
Query:       MMETSP1061-20121228|876_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1116.83
//
Query:       MMETSP1061-20121228|880_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.31
# Mc/sec: 549.24
//
Query:       MMETSP1061-20121228|879_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-29   98.3   0.0      1e-28   98.0   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00011   19.0   0.0    0.00015   18.6   0.0    1.1  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.0     5e-32     1e-28       4     162 ..      11     167 ..       8     169 .. 0.97

  Alignments for each domain:
  == domain 1    score: 98.0 bits;  conditional E-value: 5e-32
  TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklnaepiielsaetgknidklfklv 162
                +k+v++G+   GK++L  ++++   + ++ +p+v+ ++vt+  +++G+t+kv+++DTaGqe+f+++ ++y++++++ + ++d++++ +++e  +  +  +++ e  ++g+++ + ++K+Dl +d +t++++ +ak  +  +i++sa+t +n+  lf+ v
  MMETSP1061-20121228|879_1  11 FKVVMLGDTFTGKTSLVLRFAEGRYRGQSVDPTVGASFVTKRLTVQGITAKVQIWDTAGQEQFKRLAPMYYKNAAAAILCYDVTSP-KSFETLE-YWMDKLKSESSNAGMVVAMCATKCDLDSDPDTSQAEALAKQTGSFFIKTSAKTNSNVQLLFQKV 167
                79********************999*************************************************************.9999888.***********999999****************************************9999876 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   7.2e-08   0.00015       9     167 ..      12     171 ..       7     181 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 7.2e-08
  TIGR03918   9 hialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplG.pvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke..keklekkkeeevvlvsakekegieelkealiell 167
                +++++G + +GK sl+  +++      s  p   +  v+k + ++ +   v + DTaG +   +L  + ++ + +++   d++       ++le + ++l +e ++  + v + ++k+dl ++ ++  +e+l k++++ ++++sak++++++ l ++++e++
  MMETSP1061-20121228|879_1  12 KVVMLGDTFTGKTSLVLRFAEGRYRGQSVDPTVGASFVTKRLTVQGITaKVQIWDTAGQEQFKRLAPMYYKNAAAAILCYDVTSPKSF--ETLEYWMDKLKSESSNAGMVVAMCATKCDLDSDPDTsqAEALAKQTGSFFIKTSAKTNSNVQLLFQKVMENV 171
                68999*************9999999999889889999********9962699**********************99999997643333..3456667778888888888888999999998876654478888999999****************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|883_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-11   41.5   0.0    2.8e-11   41.0   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
      6e-11   39.9   0.0    9.5e-11   39.2   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    6.7e-11   40.3   0.0      9e-11   39.8   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    8.2e-10   36.4   0.0    1.3e-09   35.8   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
      1e-05   22.9   0.0    1.4e-05   22.4   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    7.6e-05   20.2   0.0    0.00024   18.5   0.0    1.8  1  TIGR02081 metW: methionine biosynthesis protein MetW
    0.00049   17.1   0.0    0.00065   16.7   0.0    1.1  1  TIGR02716 C20_methyl_CrtF: C-20 methyltransferase BchU
    0.00092   16.0   0.0     0.0013   15.5   0.0    1.1  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
     0.0069   13.7   0.0      0.011   13.0   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   6.1e-14   2.8e-11      24     154 ..     101     234 ..      77     257 .. 0.80

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 6.1e-14
  TIGR01983  24 klnpvRleyikekikkklkkne.....kkleglkvlDvGcGgGllseslarl.gaevtgiDlseelievAklhakkdplk.kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilflsti 154
                 + + R ++++ +i+      e        + ++v+DvGcG G  s  +ar+ ++  +gi ls  + +  ++ ak+++++ + +++++++ +   e ++sfD+v ++E  EH++d ++++ e+ ++  pgg +++ t 
  MMETSP1061-20121228|883_1 101 YIPEDRTDHVQAQIDLID---EvlkwaGVTKATSVVDVGCGIGGSSRHIARKfNCRAQGITLSPYQAARGNELAKEQGVAdQTSFRVADALDQPFE-DNSFDLVWSLESGEHMPDKTKFVDELFRVATPGGRILIVTW 234
                455556666666666321...1233445566899****************982455***********************98999*99998888777.577********************************999884 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   2.1e-13   9.5e-11      30     147 ..     119     237 ..     116     260 .. 0.91

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 2.1e-13
  TIGR01934  30 kavkkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eeanvefieadaeeLpfednsfdav.tiafGlRNvtdiekaLkelaRVlkpggrlvilefskp 147
                +++k+++++k++ v+Dv +G G  + ++a+k + +  g+ ls+   + +++ ake+    + +f +ada + pfednsfd+v ++  G   + d++k ++el+RV +pggr++i+   ++
  MMETSP1061-20121228|883_1 119 EVLKWAGVTKATSVVDVGCGIGGSSRHIARKFNCRAQGITLSPYQAARGNELAKEQgVADQTSFRVADALDQPFEDNSFDLVwSLESG-EHMPDKTKFVDELFRVATPGGRILIVTWCHR 237
                678999999************************999***************9999999999*******************98466666.689*********************9976655 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0     2e-13     9e-11      27     146 ..     121     245 ..     105     286 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 2e-13
  TIGR02072  27 lkekrkfepakvLdiGcGtGiltrallkrfpqae.lialDiseemleqakkkls......nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafstfgketlkElrql 146
                lk  + ++ ++v d+GcG G  +r+++++f+     i+l  s+ + ++ ++  +      + +f  +d+   p+e++sfDl++S  +   + d++++++el+rv +pgG +++ t ++  l E +  
  MMETSP1061-20121228|883_1 121 LKWAGVTKATSVVDVGCGIGGSSRHIARKFNCRAqGITL--SPYQAARGNELAKeqgvadQTSFRVADALDQPFEDNSFDLVWSLESGEHMPDKTKFVDELFRVATPGGRILIVTWCHRDLEEGETN 245
                3333356678*******************9976323333..3333333333222345899*************************************************************996655 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   2.8e-12   1.3e-09      32     150 ..     115     232 ..     104     240 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 2.8e-12
  TIGR02752  32 kwrkdtmkrmnvqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdakl.envelvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvcl 150
                +  ++++k   v k ++++dv cg +  +  +a++     + +g+ +s    + g+e  k++ + ++ ++   +a++ p+ednsfd v        +pd  + + e+ rv+ pgg++  +
  MMETSP1061-20121228|883_1 115 DLIDEVLKWAGVTKATSVVDVGCGIGGSSRHIARKFN--CRAQGITLSPYQAARGNELAKEQGVaDQTSFRVADALDQPFEDNSFDLVWSLESGEHMPDKTKFVDELFRVATPGGRILIV 232
                556899999***********************99875..6778999****9*****9999987626889999****************88778899********************9876 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   3.1e-08   1.4e-05      40     134 ..     116     212 ..      81     236 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 3.1e-08
  TIGR02021  40 mrekllewlpkdslkGkkvlDAGCGtGllsielAkr.GaivkavDiseklvelarkraekedeaenveFevndlesle...gkfDavvalDvlihYpae 134
                + +++l+w +    k + v+D GCG G  s ++A++   + +++ +s+   +  ++ a+++ +a++  F v d + +    + fD v +l++  h p++
  MMETSP1061-20121228|883_1 116 LIDEVLKWAGV--TKATSVVDVGCGIGGSSRHIARKfNCRAQGITLSPYQAARGNELAKEQGVADQTSFRVADALDQPfedNSFDLVWSLESGEHMPDK 212
                56778888884..59999****************873679999*****************************98775333589********99999876 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.3e-07   0.00024      11     103 ..     126     224 ..     116     312 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.3e-07
  TIGR02081  11 ipagsrvLDlGcGdGeLLallrdekqvegaGleideenvla....cvarGvev.iqqdldegLea.fedksfDvvvlsqtlqavrnteeiLdellRvgr 103
                + +  +v+D+GcG G   + ++ + +++++G+ ++  + +     + ++Gv       + + L++ fed+sfD+v   ++   +   ++ +del+Rv+ 
  MMETSP1061-20121228|883_1 126 VTKATSVVDVGCGIGGSSRHIARKFNCRAQGITLSPYQAARgnelAKEQGVADqTSFRVADALDQpFEDNSFDLVWSLESGEHMPDKTKFVDELFRVAT 224
                667889***************************986655531111456676431344677778655*********99999999**************85 PP

>> TIGR02716  C20_methyl_CrtF: C-20 methyltransferase BchU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-06   0.00065     138     302 ..     117     284 ..      98     288 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.4e-06
  TIGR02716 138 ielllkeaklddvkklidvgggigdiaaallkafpeldvtllnlpsaldlvrenvaekgladrirgvavdiykesypeadavlfsrilysaneqlstillkkaydalrsggrllildmviddpenp..nydylshylla.igmgfsvlefkeqavykelleslgykdv 302
                i+ +lk a + +   ++dvg gig  +  + ++f      +   p      +e + e+g+ad+      d   +++ +    l   +         t ++   +     ggr+li+     d e+   n       +la i  ++ + ++     y +lle  g +dv
  MMETSP1061-20121228|883_1 117 IDEVLKWAGVTKATSVVDVGCGIGGSSRHIARKFNCRAQGITLSPYQAARGNELAKEQGVADQTSFRVADALDQPFEDNSFDLVWSLESGEHMPDKTKFVDELFRVATPGGRILIVTWCHRDLEEGetNLSKKEERILArINRAYYLPKWCSVQDYVDLLEAKGATDV 284
                3334566666666789*******************999999999999999*************999999******999888777777666666778999999999999*******99999998765114444444454437778888888888888888888888887 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.9e-06    0.0013     280     344 ..     115     180 ..     109     200 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.9e-06
  TIGR00479 280 klvdralealelqgeekvvDaycGvGtftlplAkqak.svvgvevvkesvekakrnAelngianve 344
                 l+d++l+++ ++++  vvD+ cG+G  +  +A++ + ++ g+   +    +++  A+ +g+a+ +
  MMETSP1061-20121228|883_1 115 DLIDEVLKWAGVTKATSVVDVGCGIGGSSRHIARKFNcRAQGITLSPYQAARGNELAKEQGVADQT 180
                699******************************997647999999999999999999999987654 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.4e-05     0.011      76     162 ..     116     202 ..     113     202 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.4e-05
  TIGR03534  76 LveaaleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkN..akrlglke.veflksdllealeekgkfdlivs 162
                L++++l+++  +++++v+D+g+G G     +    ++++  a  i+ + ++ ar N  ak++g+++ ++f  +d l++  e+++fdl+ s
  MMETSP1061-20121228|883_1 116 LIDEVLKWAGVTKATSVVDVGCGIGGSSRHI---ARKFNCRAQGITLSPYQAARGNelAKEQGVADqTSFRVADALDQPFEDNSFDLVWS 202
                899******888889********77655555...556777777777778888888855778888889*********88779*****9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 1191.29
//
Query:       MMETSP1061-20121228|885_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 949.47
//
Query:       MMETSP1061-20121228|884_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-56  187.6   0.0    6.3e-56  187.2   0.0    1.1  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    6.3e-17   59.6   0.0      1e-16   58.9   0.0    1.3  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    1.7e-05   22.2   0.0    2.9e-05   21.5   0.0    1.3  1  TIGR03691 20S_bact_alpha: proteasome, alpha subunit
    6.1e-05   20.7   0.0    8.8e-05   20.2   0.0    1.2  1  TIGR03690 20S_bact_beta: proteasome, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.2   0.0   6.1e-59   6.3e-56       2     226 ..      42     269 ..      41     273 .. 0.93

  Alignments for each domain:
  == domain 1    score: 187.2 bits;  conditional E-value: 6.1e-59
  TIGR03633   2 aYDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk..earlfetdPsGalleykavaiGagrekvlellekeyke..dlsldeaielalkalakal..eeelkaeevevavveveekkfrklskeeve 226
                 YD  +tv+sP+Grl+qveYa e+vk+g+++vG+k+++ vvl + kr  s+l +++  +k+ +iDdh+++  aGl aDar l  + r+e + ++++Y+ pi+  v+   +ad +q  tq+   rPfGv ll+aGvd +  +++l++t PsG+++e+ a a+Ga ++++ ++lek+y++  + sld+ i  al+al   +  ++el++e+  +a+v ++ +k+  l+ + ++
  MMETSP1061-20121228|884_1  42 QYDTDVTVWSPEGRLLQVEYAMESVKQGSACVGVKSNTHVVLGALKRSVSELSSHQ--KKLLEIDDHICMGIAGLTADARSLAKYMRNECLNHKYIYGAPITPAVIMGDLADKHQRTTQTYVRRPFGVGLLVAGVDPQfqTPHLYQTCPSGNMYEFYASAVGARSQSARTYLEKHYESfpESSLDDLIVHALQALVGCVsgDDELTKENGSIAFVGKD-QKYVILEGDALQ 269
                5**************************************************97655..7*****************************************************************************987799**********************************9766899************99884459************985.566666666665 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0     1e-19     1e-16       2     163 ..      70     233 ..      69     257 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 1e-19
  TIGR03634   2 tTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvka....latllsnllksskflpflvqllvgGvde..egpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiks 163
                +  vG+k + +vvl a kr   +   +s + kK+++idd+i + iaG+ +da+sl++++++e+   +   + +i+       la       + +   pf v llv+Gvd   + p+ly+  p+G++ e    a+G+ s+ a + Le++Ye+ +  ++  +l+v+a+++
  MMETSP1061-20121228|884_1  70 SACVGVKSNTHVVLGALKRSVSE---LSSHQKKLLEIDDHICMGIAGLTADARSLAKYMRNECLNHKYIYGAPITPAVimgdLADKHQRTTQTYVRRPFGVGLLVAGVDPqfQTPHLYQTCPSGNMYEFYASAVGARSQSARTYLEKHYES-FPESSLDDLIVHALQA 233
                678*************9997665...477889******************************98888888888876541000444444455555567************97778***************99******************85.4444444555555544 PP

>> TIGR03691  20S_bact_alpha: proteasome, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.8e-08   2.9e-05      17     197 ..      59     244 ..      50     261 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2.8e-08
  TIGR03691  17 aelarkGiargrsvvvlsyadGilfva.....enpsaslhkiselydriafaavGkynefenlrraGvryadvrGysydrrdvtaralanvyaqtlGavfteqekPyevelvvaevgeeteedqlyrltfdGsivderefvvlGGtaeqiaaalkesyee..elsladalrvavqalaaesekekrel 197
                 e+a   + +g + v ++++  +++ a      + s+  +k+ e+ d+i++  +G   +  +l +   +    + y y      a  + +   +   +  t  ++P+ v l va v  + ++++ly+    G +  e    ++G  +++  ++l+++ye+  e+sl d +  a+qal   ++++  el
  MMETSP1061-20121228|884_1  59 VEYAMESVKQGSACVGVKSNTHVVLGAlkrsvSELSSHQKKLLEIDDHICMGIAGLTADARSLAKYMRNECLNHKYIYGAPITPAVIMGDLADKHQRTTQTYVRRPFGVGLLVAGVDPQFQTPHLYQTCPSGNMY-EFYASAVGARSQSARTYLEKHYESfpESSLDDLIVHALQALVGCVSGD-DEL 244
                688888888999999999888888876221112334556899999999999999999999999998888888899999876555555555555666677788899************************999986.5667799***************954499************98654433.344 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.6e-08   8.8e-05       6     175 ..      70     238 ..      65     250 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 8.6e-08
  TIGR03690   6 ttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamv.rsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklyk..edlseedavrvavealydaa 175
                ++ v ++ +  v+l   +r+ +     s + +k+ + d++ ++giaG ++ a  l+k  + e   ++ i G+p++ +     la    r   +   + + v  l++G d + ++  ++    +g  +e    ++vG+ s  a++ l k y+  +++s +d +  a++al    
  MMETSP1061-20121228|884_1  70 SACVGVKSNTHVVLGALKRSVSE---LSSHQKKLLEIDDHICMGIAGLTADARSLAKYMRNECLNHKYIYGAPITPAVIMGDLADKHqRTTQTYVRRPFGVGLLVAGVDPQFQTPHLYQTCPSGNMYE-FYASAVGARSQSARTYLEKHYEsfPESSLDDLIVHALQALVGCV 238
                55566666666666666665543...2557789*****************************9999************9999998761555566667777878889*********9998777766665.66789****************944578889999999**998753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 1199.90
//
Query:       MMETSP1061-20121228|881_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.42
# Mc/sec: 1923.27
//
Query:       MMETSP1061-20121228|886_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00067   16.6   4.3    0.00077   16.4   3.0    1.1  1  TIGR00712 glpT: glycerol-3-phosphate transporter
     0.0096   13.9   0.5     0.0096   13.9   0.4    2.5  2  TIGR03758 conj_TIGR03758: integrating conjugative element protein, PFL_4701 family
  ------ inclusion threshold ------
        4.5    5.4  10.6       0.59    8.2   3.4    2.3  2  TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit


Domain annotation for each model (and alignments):
>> TIGR00712  glpT: glycerol-3-phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   3.0   5.6e-07   0.00077     308     410 ..      45     150 ..      11     160 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.6e-07
  TIGR00712 308 lcgw.vsdkvfkgkrgatgvlfmilvtiavvv..ywlnpagnplvdlillivigfliygpvmliglhalelapkkaagtaagltglfgylggsvaasaivgyavdr 410
                 c w + ++++ g+    g + m l tia ++  +w   +  p+v   +l+v+ f +  p+++     + +a k  ag a+ l+ ++gy     + s++v ++   
  MMETSP1061-20121228|886_1  45 YCLWaLVNRYLAGRTQELGHISMGLLTIACLAtdHWKLSTKIPIVASTCLVVLNFAVVIPMIVAAGGPVGFAKKVLAGDASVLAMVWGYTFTVYMLSSVVLFSYVL 150
                6888557899999****************998557999999***********************9************************99988888888776544 PP

>> TIGR03758  conj_TIGR03758: integrating conjugative element protein, PFL_4701 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.4   7.1e-06    0.0096      19      62 ..      30      73 ..      23      77 .. 0.87
   2 ?   -1.2   0.3      0.39   5.3e+02      22      35 ..     119     132 ..     108     145 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.1e-06
  TIGR03758 19 lntlilglvlavllLwaaWalltvyrGwaekklresallesair 62
               ++ l+ + v  ++l ++ Wal++ y + ++++l +  ++  +i 
  MMETSP1061-20121228|886_1 30 SSSLLRSAVWKIALFYCLWALVNRYLAGRTQELGHISMGLLTIA 73
               678999***********************999999888877775 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.39
  TIGR03758  22 lilglvlavllLwa 35 
                +++g   +++++w+
  MMETSP1061-20121228|886_1 119 VLAGDASVLAMVWG 132
                55555666666665 PP

>> TIGR02970  succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.4   0.00043      0.59      28      82 ..       6      57 ..       2     109 .. 0.76
   2 ?   -0.6   0.2      0.23   3.2e+02      26      44 ..     130     148 ..     113     157 .. 0.56

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00043
  TIGR02970 28 GvllflglllllwllslsllseesfatlsallssilvklllvgllaallyHllnG 82
               G++l+++   ++w +  +l+s++s    s+ll s+++k++l+ +l+al+  +l+G
  MMETSP1061-20121228|886_1  6 GLVLMIVSNAVSWHM--VLVSSKS-GESSSLLRSAVWKIALFYCLWALVNRYLAG 57
               555555555555544..4444443.345678999***************999998 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.23
  TIGR02970  26 itGvllflglllllwllsl 44 
                + G + ++++l  ++l+s 
  MMETSP1061-20121228|886_1 130 VWGYTFTVYMLSSVVLFSY 148
                3344444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1234.10
//
Query:       MMETSP1061-20121228|882_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1202.57
//
Query:       MMETSP1061-20121228|887_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 501.56
//
Query:       MMETSP1061-20121228|888_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 963.03
//
Query:       MMETSP1061-20121228|890_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       463  (0.112872); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 2608.98
//
Query:       MMETSP1061-20121228|889_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.4    8.0   3.4        2.4    5.5   0.0    3.2  4  TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family


Domain annotation for each model (and alignments):
>> TIGR03619  F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.11   4.4e+02     177     226 ..     103     148 ..     102     159 .. 0.74
   2 ?   -0.2   0.4     0.032   1.3e+02     186     238 ..     268     317 ..     256     321 .. 0.76
   3 ?   -0.6   0.0     0.044   1.8e+02      88     113 ..     364     388 ..     361     395 .. 0.72
   4 ?    5.5   0.0   0.00058       2.4     120     208 ..     645     736 ..     642     743 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.11
  TIGR03619 177 gdGwlplglagveelaeaveelrelaaeagrdpdavevvlvrkdlegdad 226
                +dGw p      e+l +++e+l +l +e + d+ + +v+++++d++ + d
  MMETSP1061-20121228|889_1 103 ADGWEPNE----EDLLSEIEDLDDLDDELDLDDVESSVAGTDEDDDDEDD 148
                79999999....88888999999998888888888888888444444444 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.032
  TIGR03619 186 agveelaeaveelrelaaeagrdpdavevvlvrkdlegdadavaedlaalael 238
                ++ ee ++++++++e  a+++ + ++v++++    +  + d+v+++l+a+++l
  MMETSP1061-20121228|889_1 268 PDDEEYNAELKQVQENSAKRQAAAAKVGAAAN---KYETDDEVENELDAMEDL 317
                56678889999999999999999999998888...555666677777776664 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.044
  TIGR03619  88 SgGRlvlgvGvGwlreEfralgadfa 113
                S++R  ++ G+G   eE++al++ ++
  MMETSP1061-20121228|889_1 364 SANRTNIA-GTGITDEEMEALDQSWK 388
                55555554.88888888888887765 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.00058
  TIGR03619 120 dealevlralwtqdevsfegefvefdavvvrPkpvqrpiPiwigGns...eaalrRaarlgdGwlplglagveelaeaveelrelaaeagrd 208
                +  l++ +++ t+ e +f   +++ ++++++ +p  ++  iw+         ++rRaa   dGw   g  + ++++  v+e+ +l++e  r+
  MMETSP1061-20121228|889_1 645 EADLDIAEKITTRMEKEFGNAIYTETKIYQHATPNDNVFEIWLESYEvdlLHSRRRAAMNVDGWEGKGEIDDHRMDYLVKEIGKLTSEDART 736
                55678888889999999999999999999999998888899999988777789***************889999999999999999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 2813.25
//
Query:       MMETSP1061-20121228|891_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 764.76
//
Query:       MMETSP1061-20121228|892_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1238.99
//
Query:       MMETSP1061-20121228|893_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1625.72
//
Query:       MMETSP1061-20121228|894_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 615.95
//
Query:       MMETSP1061-20121228|896_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    5.6  12.5        1.5    5.0   8.6    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   8.6   0.00038       1.5     229     271 ..      72     114 ..      69     125 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00038
  TIGR01348 229 evegaapaaaeapakaeaaaaapaaeaeeaaaapaaakaeaka 271
                ++  +a+a a+apa+a +aaaapaa a++aaa++aaa+a + +
  MMETSP1061-20121228|896_1  72 KSRLTADAGAAAPAAAAPAAAAPAAAAPAAAAPAAAAPAAGGS 114
                5666677777888888888888888888888888877776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|897_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1291.35
//
Query:       MMETSP1061-20121228|900_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1670.17
//
Query:       MMETSP1061-20121228|901_1  [L=1059]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1059 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.12s 00:00:00.59 Elapsed: 00:00:00.45
# Mc/sec: 3106.14
//
Query:       MMETSP1061-20121228|899_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-30  104.0   0.6    1.4e-29  101.2   0.0    2.5  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    9.2e-17   59.0   0.0    1.8e-16   58.1   0.0    1.4  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    9.1e-15   52.4   2.8    1.6e-08   31.8   0.1    2.3  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      4e-11   40.5   1.5    5.6e-06   23.5   0.0    2.3  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    7.4e-11   39.9   0.4    6.3e-06   23.9   0.0    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain
    5.7e-09   33.8   0.1    5.7e-09   33.8   0.1    3.3  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    1.1e-08   32.2   2.7    2.8e-06   24.3   0.1    2.8  3  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    1.1e-06   26.1   3.4     0.0002   18.6   0.0    2.7  3  TIGR00436 era: GTP-binding protein Era
    1.4e-06   25.3   1.1     0.0007   16.4   0.1    3.0  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
    3.8e-06   24.0   0.4     0.0016   15.3   0.0    2.4  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    0.00011   18.9   0.0    0.00011   18.9   0.0    2.8  3  TIGR00437 feoB: ferrous iron transport protein B
     0.0022   15.0   0.0     0.0048   13.9   0.0    1.5  1  TIGR00092 TIGR00092: GTP-binding protein YchF
  ------ inclusion threshold ------
      0.033   11.6   1.4       0.13    9.6   0.1    2.4  3  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A


Domain annotation for each model (and alignments):
>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.3       3.3     1e+03     140     153 ..      30      43 ..       5      56 .. 0.49
   2 !  101.2   0.0   4.3e-32   1.4e-29      13     271 ..     158     422 ..     154     426 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3.3
  TIGR03596 140 kkkvakvgnkpgvT 153
                +kk+ak  +k gv 
  MMETSP1061-20121228|899_1  30 RKKQAKRDAKNGVV 43 
                23333333333333 PP

  == domain 2    score: 101.2 bits;  conditional E-value: 4.3e-32
  TIGR03596  13 keikeklklvDvvievlDARiplssk.npeleelvk...nkprlivlnkaDladpektkkwlkyfeekgk.......kalavnakkkkkvkkilkaikkllk...ekkeklkakglkkkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklskeleLlDtPGilwpkledeevglkLaltgaikdeildkeevalfllellkekypeelkerykleeeee.eeeelleeiakkrglllkggeldleraaeillkelrkgklg 271
                +e+k+ ++++Dv+++vlDAR p+ s+ +++le+++    +k+ ++vlnk Dl+ ++++ +wl+ +++++        k++  + +k+++++++   ++ ll+   +  ++  + g +k++i + +vG PNvGKS++iN l + +++ v  +pg T s q + l+k++ LlD+PG+++    de++     l +++  + +d+      +  llk+ + e+l+ +y++   ++ +++ +l ++ak+ g +lkgg  d   aa+++l++ ++gk+ 
  MMETSP1061-20121228|899_1 158 RELKKVVDSADVLLQVLDARDPIGSRiHKTLEDVILskaEKRMVLVLNKIDLVPKDVVGQWLTVLRRSHPtiaikacKTISESDEKDASTSSVPVGMDGLLQllkNYARTGGTGGKSKTTIVVGIVGYPNVGKSSIINALKRSRAVGVSPRPGFTTSMQEVVLDKNVRLLDSPGVVFD---DETAL----LGNCVDADSIDDPI--PPVDALLKRCTAESLMMTYNIPAFPRgNTMVFLAMVAKSYGRVLKGGIPDKVGAARNVLRDWNQGKIP 422
                79999******************99857889988754458899**********************95442111111122222334445556776655555550005555555556678889999999************************************************964...44332....34445545444432..22334577778899**********99899999********************************9985 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   5.7e-19   1.8e-16      49     222 ..     151     339 ..     143     352 .. 0.77

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 5.7e-19
  TIGR03597  49 lkdedflnllnslsekkalvvavvDifdlegslike.lkrfv...kenkvllvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkk.......glkellelikkare.k......kdvy...vvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvllDtpGiineeqia 222
                 +++ +l++l++++++  ++++v+D  d  gs+i++ l++++    e++++lv NKidl+pk v  + ++  l+++  + ++k+ + +  s +k         g++ ll+l+k++++ +      k ++   +vG  NVGKSs+iN+l +     ++++ +S+ pg T  + e+ ldk+  llD+pG++ ++++a
  MMETSP1061-20121228|899_1 151 QSRRAYLRELKKVVDSADVLLQVLDARDPIGSRIHKtLEDVIlskAEKRMVLVLNKIDLVPKDVVGQWLT-VLRRSHPTIAIKACKTISESDEKDAstssvpvGMDGLLQLLKNYARtGgtggksKTTIvvgIVGYPNVGKSSIINALKR-----SRAVGVSPRPGFTTSMQEVVLDKNVRLLDSPGVVFDDETA 339
                5677899*************************98652676653336889**************9877664.67888888888888888877777651111122678899****997532222222344512256789**********963.....34599****************************9988766 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.4e-07   4.3e-05     252     331 ..     161     241 ..     150     249 .. 0.82
   2 !   31.8   0.1   5.2e-11   1.6e-08     172     229 ..     274     328 ..     247     339 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.4e-07
  TIGR03594 252 lkaieradvvllvlDategi.seqDlkiaglil.eegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAlt 331
                 k++++adv l vlDa+++i s+  +++ ++il +++k +v+v+NK+Dlv  ++   ++ + l+++ ++++   + +iS  +
  MMETSP1061-20121228|899_1 161 KKVVDSADVLLQVLDARDPIgSRIHKTLEDVILsKAEKRMVLVLNKIDLV-PKDVVGQWLTVLRRSHPTIAIKACKTISESD 241
                468999*************93456788888876267899***********.9999999999999999999888888888655 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 5.2e-11
  TIGR03594 172 eeepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgkkylliD 229
                ++++i ++i+G pNvGKS+++Nal +++ v vs+ +G T    ++ +   +k+++l+D
  MMETSP1061-20121228|899_1 274 SKTTIVVGIVGYPNVGKSSIINALKRSRAVGVSPRPGFTTSMQEVVL---DKNVRLLD 328
                35578999999999999999999999999999999999976544433...34444444 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   4.6e-06    0.0015     283     335 ..     161     216 ..     150     240 .. 0.73
   2 !   23.5   0.0   1.8e-08   5.6e-06     193     267 ..     261     332 ..     237     338 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.6e-06
  TIGR00450 283 lkaikeadlvlyvlDaskpltkdd.eliit..lkkkkkdlllvlNKiDLaeleilk 335
                +k ++ ad++l vlDa+ p      + +++  l k++k ++lvlNKiDL+ +++  
  MMETSP1061-20121228|899_1 161 KKVVDSADVLLQVLDARDPIGSRIhKTLEDviLSKAEKRMVLVLNKIDLVPKDVVG 216
                678999************98655445555422689999***********9554443 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 1.8e-08
  TIGR00450 193 lkdllnsr.kkleklkdglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGi 267
                lk+   +  +   k k+ + + ivG +NvGKSS++Nal +     Vs  +G t  + E +l+     v+llD  G+
  MMETSP1061-20121228|899_1 261 LKNYARTGgT-GGKSKTTIVVGIVGYPNVGKSSIINALKRSRAVGVSPRPGFTTSMQEVVLD---KNVRLLDSPGV 332
                4444444312.368899999*****************87665555********998887665...45888887776 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   3.3e-05      0.01      61     130 ..     148     213 ..     145     241 .. 0.76
   2 !   23.9   0.0     2e-08   6.3e-06       2      63 ..     276     332 ..     275     344 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.3e-05
  TIGR00231  61 aGqedfdairrlyvreverslevvdivilvldveegle.kqtkeiihe.akkkgvpiilvvnKiDlkddlkt 130
                aGq+ +    r+y+re +++++ +d+ + vld++++   +  k++++  + k+++ ++lv+nKiDl+   k 
  MMETSP1061-20121228|899_1 148 AGQQSR----RAYLRELKKVVDSADVLLQVLDARDPIGsRIHKTLEDViLSKAEKRMVLVLNKIDLVP--KD 213
                555555....99**********************976313456666642455799***********97..33 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 2e-08
  TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGq 63 
                ++i ++ivG ++vGKs+++n l++   + ++  pg t ++ +  +  ++    v llD +G 
  MMETSP1061-20121228|899_1 276 TTIVVGIVGYPNVGKSSIINALKRSRAVGVSPRPGFTTSMQEV-VLDKN----VRLLDSPGV 332
                5899**********************99999999988888874.55555....889999994 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.025       7.8     102     161 ..     168     229 ..     139     250 .. 0.66
   2 !   33.8   0.1   1.8e-11   5.7e-09      17      74 ..     276     332 ..     269     337 .. 0.90
   3 ?    0.3   0.0      0.34   1.1e+02     114     158 ..     452     498 ..     442     505 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.025
  TIGR03598 102 kgvvllvDirhelkelDlelle..llkeakipvlvvltKaDklkkselkkalkkvkkelkke 161
                  +++++D+r ++ +  ++ le  +l++a+ ++++vl+K+D + k  + + l+ ++++  + 
  MMETSP1061-20121228|899_1 168 DVLLQVLDARDPIGSRIHKTLEdvILSKAEKRMVLVLNKIDLVPKDVVGQWLTVLRRSHPTI 229
                4577899999998765555544335677899999*******999988887777776655554 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 1.8e-11
  TIGR03598  17 klpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevneelrlvDlPGY 74 
                +++ + ++G+ NvGKSs+iNaL +++  + +S +PG T ++    +++++rl D PG 
  MMETSP1061-20121228|899_1 276 TTIVVGIVGYPNVGKSSIINALKRSR-AVGVSPRPGFTTSMQEVVLDKNVRLLDSPGV 332
                5566889***************8877.889***************************5 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.34
  TIGR03598 114 lkelDlellellkea.kipvlvvltKaDklkkse.lkkalkkvkkel 158
                l++ D ++l  lke+ +++++ ++t aD  ++++  +++ k++++ l
  MMETSP1061-20121228|899_1 452 LSAFDDKVLGSLKESdEMDFVELVTTADDQQQQQhESERSKELANYL 498
                56667777766665526777766666666555550455555555555 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0019      0.59      81     148 ..     161     231 ..     151     251 .. 0.74
   2 !   24.3   0.1   8.8e-09   2.8e-06       7      72 ..     277     340 ..     272     346 .. 0.78
   3 ?   -1.5   0.0      0.58   1.8e+02      96     139 ..     448     492 ..     439     499 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0019
  TIGR03918  81 revlektdlallvvdaeaeleeleeellee..lkekkipvivvlnkidlkeeeke.keklekkkeeevvlv 148
                ++v++++d+ l v+da+  + +  +++le+  l++ +  +++vlnkidl+ ++   +  +  +++++++++
  MMETSP1061-20121228|899_1 161 KKVVDSADVLLQVLDARDPIGSRIHKTLEDviLSKAEKRMVLVLNKIDLVPKDVVgQWLTVLRRSHPTIAI 231
                7899*************9998887777776335788999**********9887553333333444444444 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 8.8e-09
  TIGR03918   7 rlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGl..dDegeL 72 
                 + ++++G  N+GKSs+iNal +  +  vs  pG Tt       E+     v l+D +G+  dDe++L
  MMETSP1061-20121228|899_1 277 TIVVGIVGYPNVGKSSIINALKRSRAVGVSPRPGFTTSMQ----EVVLDKNVRLLDSPGVvfDDETAL 340
                56799*******************9999********9643....344445677778877444676654 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.58
  TIGR03918  96 aeaeleeleeelleelke.kkipvivvlnkidlkeeekekeklek 139
                ae +l+++++++l +lke  ++ ++ +++ +d +++++++++++k
  MMETSP1061-20121228|899_1 448 AEFDLSAFDDKVLGSLKEsDEMDFVELVTTADDQQQQQHESERSK 492
                556677888888888876257899999999998887765443333 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0016      0.52      66     132 ..     153     222 ..     146     251 .. 0.76
   2 !   18.6   0.0   6.3e-07    0.0002       2      58 ..     279     332 ..     278     341 .. 0.80
   3 ?   -2.2   0.1       1.4   4.5e+02      96     128 ..     456     489 ..     449     516 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0016
  TIGR00436  66 nellvkeirkalsevdlilfvvdsdeknke..dellle.klqklkapvvlalnkldnkekdkllelidke 132
                 ++  +e +k +++ d++l v+d+ +  ++   + l + +l k+++++vl+lnk+d   kd + + ++ +
  MMETSP1061-20121228|899_1 153 RRAYLRELKKVVDSADVLLQVLDARDPIGSriHKTLEDvILSKAEKRMVLVLNKIDLVPKDVVGQWLTVL 222
                5677899999***************99887666677663578999999**********999876655544 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 6.3e-07
  TIGR00436   2 fvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGl 58 
                 v+i+G pnvGKS ++N l       vSp +  T  +++ ++ +++    ++D PG+
  MMETSP1061-20121228|899_1 279 VVGIVGYPNVGKSSIINALKRSRAVGVSPRPGFTT-SMQEVVLDKNV--RLLDSPGV 332
                69***************************998774.45666665543..46777776 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1.4
  TIGR00436  96 dellleklqklkapvvlalnkldnk.ekdkllel 128
                d+++l  l+++++  ++ l+      ++++++++
  MMETSP1061-20121228|899_1 456 DDKVLGSLKESDEMDFVELVTTADDqQQQQHESE 489
                4455555555555555554443333122222222 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   2.2e-06    0.0007     266     320 ..     164     216 ..     153     241 .. 0.82
   2 !   16.1   0.0   2.8e-06   0.00089     185     213 ..     273     301 ..     257     327 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.2e-06
  TIGR03156 266 vaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeele 320
                v +ad+ll+v+Da d+  ++ +++ e+v+  l  +e++++lvlNkid+++++ + 
  MMETSP1061-20121228|899_1 164 VDSADVLLQVLDARDPIGSRIHKTLEDVI--LSKAEKRMVLVLNKIDLVPKDVVG 216
                6789**************99999999998..7788999***********976654 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 2.8e-06
  TIGR03156 185 kksevptvalvGYTNaGKstllnaltkae 213
                k++++++v++vGY N GKs+++nal +++
  MMETSP1061-20121228|899_1 273 KSKTTIVVGIVGYPNVGKSSIINALKRSR 301
                4567889******************9875 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0025       0.8     238     303 ..     169     228 ..     146     249 .. 0.69
   2 !   15.3   0.0   5.1e-06    0.0016     160     182 ..     280     302 ..     274     339 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0025
  TIGR02729 238 vllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel.e 303
                vll+++d+++      +   + i+k L+    + aek++++vlnkidl+ ++ + + l+ l++++ +
  MMETSP1061-20121228|899_1 169 VLLQVLDARDP-----IG--SRIHKTLEDVILSKAEKRMVLVLNKIDLVPKDVVGQWLTVLRRSHpT 228
                55555554433.....32..3566777777777799**************99999998888877632 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 5.1e-06
  TIGR02729 160 vglvGlpnaGkStllsavsaakp 182
                vg+vG+pn+GkS++++a+ ++++
  MMETSP1061-20121228|899_1 280 VGIVGYPNVGKSSIINALKRSRA 302
                9****************988875 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   2.5      0.61   1.9e+02     138     217 ..       7      85 ..       1     129 [. 0.53
   2 ?    0.3   0.1      0.15        47      71     112 ..     165     210 ..     150     215 .. 0.79
   3 !   18.9   0.0   3.5e-07   0.00011       1      51 [.     284     332 ..     284     339 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.61
  TIGR00437 138 tkgrgieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaev 217
                +++r + + k +i++   +++ ++kk+a+++ k++ + +++++k ++ + + +  +++l+++++      ++ +++l+e 
  MMETSP1061-20121228|899_1   7 KSKRTTLKDKYKIQKRVVETHRKRKKQAKRDAKNGVV-RSNQQKRDPGIPNSWPFKQDLLKDIQRARERQQEQQQTLKEK 85 
                4455555555555555555555556666666655543.334445555656666666666655554444444433333333 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.15
  TIGR00437  71 ekadLvvnvvdasn.leRnLyltlQ...llelgiplilalNlvdeA 112
                ++ad++++v+da   +   +  tl    l ++++ ++l+lN++d+ 
  MMETSP1061-20121228|899_1 165 DSADVLLQVLDARDpIGSRIHKTLEdviLSKAEKRMVLVLNKIDLV 210
                57899999999964466677766644448899***********986 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 3.5e-07
  TIGR00437   1 GnpNvGKstlfnaLtgsnq.kvgNwpGvTVekkegklelkgedieivDlPGi 51 
                G pNvGKs+++naL  s++  v+  pG T   +e+ l    +++++ D PG+
  MMETSP1061-20121228|899_1 284 GYPNVGKSSIINALKRSRAvGVSPRPGFTTSMQEVVLD---KNVRLLDSPGV 332
                78************9987526*************9998...99********7 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.5e-05    0.0048       5      27 ..     280     302 ..     277     324 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.5e-05
  TIGR00092   5 aGivGLpnvGkstlfqaitkakl 27 
                 GivG pnvGks + +a+ +++ 
  MMETSP1061-20121228|899_1 280 VGIVGYPNVGKSSIINALKRSRA 302
                7*****************98865 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   3.9e+02      67      95 ..     195     222 ..     141     245 .. 0.77
   2 ?    9.6   0.1   0.00042      0.13     122     183 ..     274     332 ..     271     339 .. 0.68
   3 ?   -0.9   0.0      0.66   2.1e+02      66      97 ..     465     496 ..     440     498 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.2
  TIGR00157  67 akniepiivlnkkdlleeedaekeqleel 95 
                +++ + ++vlnk+dl+ ++ +  ++l  l
  MMETSP1061-20121228|899_1 195 KAEKRMVLVLNKIDLVPKDVVG-QWLTVL 222
                4455678999999999887776.666555 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00042
  TIGR00157 122 krisvfaGqSG...VGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhlqgGliiDtPGf 183
                +++++++G  G   VGKSS+iN+l+ +    v  vs +      TT   e+   ++  + D+PG+
  MMETSP1061-20121228|899_1 274 SKTTIVVGIVGypnVGKSSIINALKRSRA--VG-VSPRP---GFTTSMQEVVLDKNVRLLDSPGV 332
                56777776666555**********87644..44.33333...34666666666677788888886 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.66
  TIGR00157  66 eakniepiivlnkkdlleeedaekeqleelkn 97 
                e  +++ + ++++ d+ ++++ e e+++el+n
  MMETSP1061-20121228|899_1 465 ESDEMDFVELVTTADDQQQQQHESERSKELAN 496
                55677788899999******999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 1770.59
//
Query:       MMETSP1061-20121228|898_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 2147.02
//
Query:       MMETSP1061-20121228|904_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00032   18.8   0.0    0.00059   17.9   0.0    1.4  1  TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain
     0.0024   16.1   1.7     0.0024   16.1   1.2    1.5  2  TIGR02559 HrpB7: type III secretion protein HrpB7


Domain annotation for each model (and alignments):
>> TIGR02174  CXXU_selWTH: selT/selW/selH selenoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.9e-07   0.00059       1      53 [.     113     175 ..     113     186 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.9e-07
  TIGR02174   1 veieyCtscgYkrraeelkqaleeefpdleiegenlkpd..........stGaFEitlngklv 53 
                ++i y+++ g k+ + ++++ +++ +pd+ ie   ++ +           +G FE+ ++gklv
  MMETSP1061-20121228|904_1 113 ITIRYSAESGLKPYCLTVAKRVKDAYPDVFIERVEIDDGpmenagdpshPGGTFEVIVDGKLV 175
                799*************************9999888888899******999***********98 PP

>> TIGR02559  HrpB7: type III secretion protein HrpB7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.3       1.9   3.9e+03      14      22 ..      16      24 ..      12      32 .. 0.46
   2 !   16.1   1.2   1.2e-06    0.0024      12      75 ..     205     270 ..     198     279 .. 0.83

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.9
  TIGR02559 14 trrderlra 22
               ++r++r  +
  MMETSP1061-20121228|904_1 16 RQRQRRRSE 24
               233333222 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.2e-06
  TIGR02559  12 rktrrderl..raeleelraaleeadaelaekesqaeakedrldrhaarlddlatgtasltieall 75 
                rk+rr   +  +  + +   al++ d+ ++++ + +++k+++l+r a+rl+d a++ as ++ a +
  MMETSP1061-20121228|904_1 205 RKRRRPSTVygEHGIDASYDALDSKDRMVKARLDGLKQKATELQRSAQRLNDYASASASASASASA 270
                55666555522344788899************************************9999987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.21
# Mc/sec: 2017.55
//
Query:       MMETSP1061-20121228|905_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 686.34
//
Query:       MMETSP1061-20121228|903_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 1462.88
//
Query:       MMETSP1061-20121228|902_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1353.83
//
Query:       MMETSP1061-20121228|908_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          3    3.8  10.2        3.2    3.7   7.0    1.0  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.0   0.00078       3.2     537     632 ..      13     107 ..       3     110 .] 0.70

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.00078
  TIGR01069 537 llkeleklkkeleqkakelkererklkkelekeaqealkaakkeveeiirelkekkiekakekkatellkklkeekakvpqkpknlqadkvGdkvk 632
                 +     +k+ +eq+++e+k+++r   +e+++ ++ a   a +  +   r++   k +k+++ ++   +k  k + a +  ++ + + +++G+k+k
  MMETSP1061-20121228|908_1  13 TRSTRRRQKERWEQRYEEYKSAQRGRTSEKDQRQKTAQ-PASSAYKTAKRRSAYYKTSKDESLQDERKFKTAKRTSAYKTAIQDDEKDERLGEKDK 107
                556667899***************99999888776654.445555555566666666888888877777777755555555555555558899886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|906_1  [L=740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.20s 00:00:00.69 Elapsed: 00:00:00.50
# Mc/sec: 1953.44
//
Query:       MMETSP1061-20121228|907_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     7e-128  425.0   0.0   8.7e-128  424.7   0.0    1.1  1  TIGR00458 aspS_arch: aspartate--tRNA ligase
    9.1e-54  180.8   0.0    1.4e-48  163.7   0.0    2.1  2  TIGR00457 asnS: asparagine--tRNA ligase
      6e-36  121.8   0.0    1.5e-22   77.5   0.0    3.2  2  TIGR00459 aspS_bact: aspartate--tRNA ligase
    1.3e-26   91.1   0.1    4.2e-20   69.7   0.0    3.2  2  TIGR00499 lysS_bact: lysine--tRNA ligase
    6.6e-09   33.5   0.0    5.1e-08   30.5   0.0    2.3  2  TIGR00462 genX: EF-P lysine aminoacylase GenX
  ------ inclusion threshold ------
          2    5.4   7.2        1.5    5.8   0.0    2.9  3  TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.7   0.0  1.3e-130  8.7e-128       4     428 .]     139     608 .]     136     608 .] 0.94

  Alignments for each domain:
  == domain 1    score: 424.7 bits;  conditional E-value: 1.3e-130
  TIGR00458   4 adikeekdgkevllrgwvheirdlGalifvllrdregliqilvkkkk...vskelfklikklkkesvvavkGkvk.....ekekapqgleiipeklevlneakeplPldlee..kveaeld..........................trldarfldlrrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeityfereaflaqsPqlykqvlla.aglervyeiaPifraeehntkrhlnevisidiemafedh.kdvldileelvvrvfedvaeklkkelevlevklevpeekl....erltydeaieilrakGkeikdgedlsteaekllG....ekmdglyfitd.fPteikPfytmPdednPeisksfdllyrdleissGaqrihdydllvekikakGlePeslksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPrdrkrltP 428
                 d+ +  + ++vl+rg++   r  G+ +f+ +r    ++q++  ++    +s  ++k+i  l+ es+v v+G+v       ++ + + +e+ +++++ ++++ +++P+++e+  + + e +                           rld+r +dlr+p +q if+i+s v  ++re l  +gf+e+++Pkl+  a+eGG+++f + yf + a la sPql+kq+  a ag+e+v+  +P+frae++nt+rhl e+++ d+em  ++h ++vld++++l++++f+ +++++k+ele    + +  + ++     +lty e+  +lr +G++ +d+edlste+ekllG    ek+++++f +d +P++++PfytmPd +nP+ s+s+d++ r++ei+sGaqrih  dll e+ ka G+e e  +sy+++fk G  Ph G+G+G+er+vm +l+l nir+a+ fPrd+krl P
  MMETSP1061-20121228|907_1 139 EDLTPRLQNEKVLIRGFLQVSRSVGKGVFIKVRSTMFTVQGVCFQDDqkgISAAMIKYIAGLNIESIVDVEGIVTvpdqpVDSCTQKMVELQITSFKCVTKSIRAMPFQMEDamRPDEEKEsdvgayeandelikkradgmatvgleNRLDHRWIDLRTPANQGIFRIESMVGVLFRELLVGKGFVELHSPKLLRGASEGGADVFTLDYFGQTASLAMSPQLQKQQACAcAGFEKVFVTGPVFRAENSNTRRHLCEFTGFDLEMVIKEHyDEVLDLFSDLFIHIFDGINKRCKRELEAVREQHPFEDLRYckptLKLTYAEGCALLREAGVDQGDYEDLSTENEKLLGdlvaEKYGTDFFFMDkYPLDVRPFYTMPDPENPKLSNSYDFFIRGQEILSGAQRIHTVDLLEERAKAWGIELE--ESYVDSFKNGALPHGGGGIGLERVVMLFLGLPNIRKASWFPRDPKRLAP 608
                6999*************************************9854333369***********************98888888999999************************65444444488*****************************************************************************************************9976539**************************************99***********************9998888877777544111168********************************99999*********99******************************************************998..79*********************************************98 PP

>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.4e-06    0.0017      14     103 ..     145     241 ..     134     256 .. 0.77
   2 !  163.7   0.0   2.1e-51   1.4e-48     120     453 ..     288     606 ..     272     608 .] 0.91

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.4e-06
  TIGR00457  14 avdeevkvsgWvktkRsskkiaFlelrDGsslkalqavikkelee....eleqelkklttgssvsvsgkvve..spkkk...qelElkvkkievvgeae 103
                 ++e+v ++g+++  Rs +k  F+++r  s++ ++q v  +++++    ++ + +  l+ +s v v+g v+   +p  +   + +El++++++ v++  
  MMETSP1061-20121228|907_1 145 LQNEKVLIRGFLQVSRSVGKGVFIKVR--STMFTVQGVCFQDDQKgisaAMIKYIAGLNIESIVDVEGIVTVpdQPVDSctqKMVELQITSFKCVTKSI 241
                5799**********************9..6789*****99886651111445667789**********99873333332444789*******9987754 PP

  == domain 2    score: 163.7 bits;  conditional E-value: 2.1e-51
  TIGR00457 120 relahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvktegvdfskdffgkeayLtvsgqlel.Ealala.lskvytlgptFRAEksntkRHlsEfwmiEpElaFvn.ledllqlieelikyiikavleeakqelkfleknvekkkikkleeiisskfaritYtdAieiLkesdakkkfeledlwGvdlktehErfl....aeeyfksPvfvtdyPkeikaFYmkqn.ddektvaavDllvPkiGEiiGGseReddldkLeerlkeegldteelkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpRtaesi 453
                ++++ + lRt + + + ++ s++   ++e    +gfv++++P l   ++EG++++F+++         +fg++a L++s ql+   a+a+a ++kv+  gp FRAE+snt+RHl Ef+  + E+   +  ++ l+l  +l  +i+  + + +k+el+ + ++   + ++  +        ++tY +  ++L+e+       +++   +dl+te E+ l    ae+y  +  f+ +yP ++++FY     +++k  ++ D ++ +  Ei+ G++R++ +d Leer k+ g++ ee   y+d  k G +ph+G G+GleR+v    gl nir a+ fpR ++++
  MMETSP1061-20121228|907_1 288 LDHRWIDLRTPANQGIFRIESMVGVLFRELLVGKGFVELHSPKLLRGASEGGADVFTLD---------YFGQTASLAMSPQLQKqQACACAgFEKVFVTGPVFRAENSNTRRHLCEFTGFDLEMVIKEhYDEVLDLFSDLFIHIFDGINKRCKRELEAVREQHPFEDLRYCK-----PTLKLTYAEGCALLREA------GVDQGDYEDLSTENEKLLgdlvAEKYGTDFFFMDKYPLDVRPFYTMPDpENPKLSNSYDFFIRG-QEILSGAQRIHTVDLLEERAKAWGIELEE--SYVDSFKNGALPHGGGGIGLERVVMLFLGLPNIRKASWFPRDPKRL 606
                6889999*************************************************999.........**************8625677766**********************************9989999**************************9999888888666.....4568*************......333433479******9874444789999999*************77766***********9976.6*************************997..59***************************************99987 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   2.2e-25   1.5e-22       7     275 ..     138     440 ..     133     481 .. 0.80
   2 !   37.7   0.0   2.5e-13   1.7e-10     468     557 ..     519     602 ..     508     606 .. 0.92

  Alignments for each domain:
  == domain 1    score: 77.5 bits;  conditional E-value: 2.2e-25
  TIGR00459   7 igelkekslgkkvtlaGWverrkdlGeliFidlrDkegivq.vvsdkk.....kealelakelrnedvvqvkgkvslreeesknrnldtgeievlaeeitvlnks.kkkPleie...kkeaeee............................vrlkyRYLdLRrpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGardyLvPsRvkkgefyaLpqsPqlfkqL.LmvsGvdkYyqiarcfRDeDlRaDRq.PeftqiDlemsFlnq.edvmelveklvsevfkevkkidlkkkfpvltye 275
                i++l+ +  ++kv + G+++  + +G+ +Fi++r    +vq v+++++     ++  + +++l  e +v+v+g+v++ + + + +    + +e++  + + + ks +  P+++e   +    ee                             rl +R++dLR p+ q +++  s v    R+ l  kgF+e+  P L +   eG  d         g+   L  sPql kq     +G++k +    +fR e++   R   eft  Dlem   ++ ++v++l  +l+ ++f  +     k+++ +++ +
  MMETSP1061-20121228|907_1 138 IEDLTPRLQNEKVLIRGFLQVSRSVGKGVFIKVRSTMFTVQgVCFQDDqkgisAAMIKYIAGLNIESIVDVEGIVTVPD-QPV-DSCTQKMVELQITSFKCVTKSiRAMPFQMEdamR--PDEEkesdvgayeandelikkradgmatvgleNRLDHRWIDLRTPANQGIFRIESMVGVLFRELLVGKGFVELHSPKLLRGASEGGADVFTLDY--FGQTASLAMSPQLQKQQaCACAGFEKVFVTGPVFRAENSNTRRHlCEFTGFDLEMVIKEHyDEVLDLFSDLFIHIFDGIN-KRCKRELEAVREQ 440
                678888889********************************555555544443344577899*************6655.334.4467778899999998888773568999986431..22222356778888999**********998888****************************************************999765554..566668999******8615679*****************9999758**********9876378*************9984.4555555554333 PP

  == domain 2    score: 37.7 bits;  conditional E-value: 2.5e-13
  TIGR00459 468 ealaeayDlvlnGvelGgGsiRihdkelqekvfeilgideeearekFgflleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFPkt 557
                  l++ yD+ + G e+ +G+ Rih  +l e+  +  gi+ ee        ++ f+ Ga ph+G ++Gl+R+vml+ +  +iR    FP+ 
  MMETSP1061-20121228|907_1 519 PKLSNSYDFFIRGQEILSGAQRIHTVDLLEERAKAWGIELEE------SYVDSFKNGALPHGGGGIGLERVVMLFLGLPNIRKASWFPRD 602
                46899*********************************9996......458*********************************999985 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1     4e-07   0.00027      45     145 ..     139     248 ..      96     276 .. 0.82
   2 !   69.7   0.0   6.1e-23   4.2e-20     152     490 ..     285     600 ..     270     604 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4e-07
  TIGR00499  45 kneeleekelevsiaGRikakRsmgkatFitlqdesgklqlyvnkdklsedveeleekl..ldlGDiigvkGkl.......kktktgelsvkveelklltkalrplPekf 145
                ++   + ++++v i G ++  Rs gk +Fi+++ +  ++q +  +d+ +  ++ + +++  l++  i+ v+G +           ++++ ++++++k +tk++r +P ++
  MMETSP1061-20121228|907_1 139 EDLTPRLQNEKVLIRGFLQVSRSVGKGVFIKVRSTMFTVQGVCFQDDQKGISAAMIKYIagLNIESIVDVEGIVtvpdqpvDSCTQKMVELQITSFKCVTKSIRAMPFQM 248
                4455667899******************************99999988887777777777878888888888887777777677889******************99765 PP

  == domain 2    score: 69.7 bits;  conditional E-value: 6.1e-23
  TIGR00499 152 EtryrkRylDlivnkesrqtflkRskiikaiRkfldergflEvEtPilqsisgGAsAkPFithhnaldvdlylRiApElyLKrL.ivgGlekvyEigrvFRnEGvdt.tHnpEFttiElYqay.adyedllelteellktlvkellgtlkikykeeeldlkkpvkkitmleaikkidketgislddlkdsetakalakklaievaekslslgkilnklfeefvEetliqPtfiteyPaeisPL.AkrddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDedfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFp 490
                E+r  +R++Dl +  +++  f++ s +  + R+ l  +gf+E+  P l   +    A  F   +    +   l + p l  ++    +G+ekv+  g vFR E  +t +H  EFt  +l +     y+++l+l  +l+ ++   +++ +k +++   +  ++p++ +++   + k++ + g +l      ++             + s+ ++k+l  l+   +E+   +  f+ +yP  + P     d+enp+l + +++Fi+g+Ei  + + +          +     +e +     +l+e++v++++ G  p gG GiG++R+vml+   ++ir    Fp
  MMETSP1061-20121228|907_1 285 ENRLDHRWIDLRTP-ANQGIFRIESMVGVLFRELLVGKGFVELHSPKLLRGASEGGADVFTLDY--FGQTASLAMSPQLQKQQAcACAGFEKVFVTGPVFRAENSNTrRHLCEFTGFDLEMVIkEHYDEVLDLFSDLFIHIFDGINKRCKRELEA--VREQHPFEDLRYCKPTLKLTYAEGCALLREAGVDQGDY--------E-DLSTENEKLLGDLV---AEKYGTDFFFMDKYPLDVRPFyTMPDPENPKLSNSYDFFIRGQEILSGAQRI----------HTVDLLEERAKAWGIELEESYVDSFKNGALPHGGGGIGLERVVMLFLGLPNIRKASWFP 600
                99999******987.8899***************************876554444566788888..6777888899***988761579***************988736*******9998875157999*****************998877665..555679*******9999888777766444444443332........2.44455667776665...556666778***********835689*******************9875443..........333333334445667899***********************************999998 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.38   2.6e+02     149     185 ..       8      44 ..       4      50 .. 0.86
   2 !   30.5   0.0   7.4e-11   5.1e-08      53     304 .]     350     599 ..     311     599 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.38
  TIGR00462 149 tasleelkeaaekageaaseeedredlldlllvekve 185
                ta+ +el + +++a+  ++ +e +++ l+++l  k+e
  MMETSP1061-20121228|907_1   8 TAQITELGDKIKQAKADKQPKELWDEHLQKMLQLKIE 44 
                56788899999999999999999******99999998 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 7.4e-11
  TIGR00462  53 eklyLqtSPEyamKrL.LaagsgkifqlakvfRneer.grlHnpEFtmLEwYr.vgadleelmeeveellqevle....deeaeverlsyaeaferylgidp.ltasleelkeaaekageaaseeedredlldlllvekvepklgkerptflydyPasq.aaLarikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieevlaf 304
                ++  L  SP ++  +   +ag +k+f  + vfR e++  r+H  EFt  +    ++ +++e+++  ++l+ ++++    + ++e+e ++ ++ fe++  ++p l+ + +e  +++++ag+ + + ed ++  ++ll + v +k g++ + f+ +yP +        +++++++++ ++++i+g E+  g           +R ++     ++++   ++l+e+++++ ++g  +  G  +Gl+R++ml+lg  +i++  +f
  MMETSP1061-20121228|907_1 350 QTASLAMSPQLQKQQAcACAGFEKVFVTGPVFRAENSnTRRHLCEFTGFDLEMvIKEHYDEVLDLFSDLFIHIFDginkRCKRELEAVREQHPFEDLRYCKPtLKLTYAEGCALLREAGVDQGDYEDLSTENEKLLGDLVAEKYGTD-FFFMDKYPLDVrPFYTMPDPENPKLSNSYDFFIRGQEILSG----------AQRIHTVDLLEERAKAWGIELEESYVDSFKNGALPHGGGGIGLERVVMLFLGLPNIRKASWF 599
                46668888888776541579*************9987689*******876644145667788888888888888788878889999**********999999455588888889999999999**********************87.99******9861566778899****************9887..........4577777777777888999***********9977788889****************988776 PP

>> TIGR00468  pheS: phenylalanine--tRNA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   2.3       2.8   1.9e+03       7      48 ..      63     103 ..      57     115 .. 0.42
   2 ?    2.8   0.0     0.018        13     181     213 ..     372     406 ..     351     431 .. 0.71
   3 ?    5.8   0.0    0.0022       1.5     291     310 ..     576     595 ..     568     602 .. 0.91

  Alignments for each domain:
  == domain 1    score: -4.4 bits;  conditional E-value: 2.8
  TIGR00468   7 kklkkvkkeeekekliklikevkeeleeeltklkkellkaea 48 
                k+++ v++ ++k+k  k +k++ e+ +++++k +k  ++a+ 
  MMETSP1061-20121228|907_1  63 KNVGAVTEASDKNK-EKRAKKAAEKAAKAAEKERKRAERAAR 103
                44444544443322.233333333333333333333333333 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.018
  TIGR00468 181 irifsigrvfRrdav.datHlpeFhQveg.lvvdk 213
                 ++f  g vfR ++  + +Hl eF+  ++ +v+++
  MMETSP1061-20121228|907_1 372 EKVFVTGPVFRAENSnTRRHLCEFTGFDLeMVIKE 406
                699********99861568*****99886344443 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0022
  TIGR00468 291 fGlgieRlamlkygikdiRd 310
                 G+g+eR++ml +g+ +iR+
  MMETSP1061-20121228|907_1 576 GGIGLERVVMLFLGLPNIRK 595
                59*****************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.22s 00:00:00.67 Elapsed: 00:00:00.47
# Mc/sec: 1707.43
//
Query:       MMETSP1061-20121228|909_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-09   35.7   0.0    2.8e-09   34.8   0.0    1.4  1  TIGR01353 dGTP_triPase: putative dGTPase
    3.2e-08   31.2   0.1    2.8e-07   28.2   0.0    2.4  2  TIGR00277 HDIG: uncharacterized domain HDIG
    0.00086   17.2   0.5     0.0029   15.5   0.3    1.9  1  TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD
     0.0014   15.1   0.0     0.0021   14.4   0.0    1.2  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
     0.0051   14.4   0.0      0.012   13.2   0.0    1.5  1  TIGR00295 TIGR00295: TIGR00295 family protein


Domain annotation for each model (and alignments):
>> TIGR01353  dGTP_triPase: putative dGTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   3.4e-12   2.8e-09      35      95 ..     102     161 ..      77     169 .. 0.86

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 3.4e-12
  TIGR01353  35 fvRtRLtHSLEvaqvgrsiakeiksraeleleeklederlvetacLaHDiGnPPFGHaGEr 95 
                ++++R  HSL va  + ++ k+ik+ ++ el  + +d   v+ a+L HDiG+ PF H  E+
  MMETSP1061-20121228|909_1 102 ANHNRFQHSLGVAFLAEKMCKTIKE-EQPELGATDKDVLCVKLAGLLHDIGHGPFSHTFEA 161
                689**********************.6999999998888899***************8775 PP

>> TIGR00277  HDIG: uncharacterized domain HDIG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.4e-10   2.8e-07       4      42 ..     105     153 ..     102     170 .. 0.87
   2 ?   -0.4   0.0      0.29   2.3e+02      51      71 ..     579     599 ..     552     606 .. 0.71

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.4e-10
  TIGR00277   4 gvleHslevaklaealae.......elg...advelarrgaLlHDIGKa 42 
                + ++Hsl va+lae++++       elg    dv  ++ ++LlHDIG  
  MMETSP1061-20121228|909_1 105 NRFQHSLGVAFLAEKMCKtikeeqpELGatdKDVLCVKLAGLLHDIGHG 153
                679***************999999999997789999***********74 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.29
  TIGR00277  51 kviiesHvkvGaeiarklgfp 71 
                ++i ++H kvG++++ ++  +
  MMETSP1061-20121228|909_1 579 SFIPIEHQKVGIRVLVREACK 599
                77889*******998776655 PP

>> TIGR01596  cas3_HD: CRISPR-associated endonuclease Cas3-HD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   3.6e-06    0.0029       3      89 ..     108     216 ..     107     223 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.6e-06
  TIGR01596   3 eHlldvaavaellknlreklaekig...elrellklaallHDlGK..atpaFQkkl............elkeeeegkkkevr.........HsllSalllydlleekeleeel 89 
                +H+l+va +ae++ ++ ++ + ++g   +   ++kla+llHD+G   +++ F +              +     ++++k+           H+  S+l+++  lee +l+ +l
  MMETSP1061-20121228|909_1 108 QHSLGVAFLAEKMCKTIKEEQPELGatdKDVLCVKLAGLLHDIGHgpFSHTFEAFRdhylpkfldanpD----LQEEYKDCEnlkpiphwnHEQSSLLFIDSALEELGLQIDL 216
                6**********888888888888889999**************84335555555555557777744442....2333333323444556778888888887777776666555 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.6e-06    0.0021     313     367 ..      88     153 ..      57     162 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.6e-06
  TIGR03319 313 likllGrlkfrtsy.gqnvlkHsievaklagllaaelgl..........dvklAkRaglLHDiGka 367
                 i+ lG  ++  +    n ++Hs+ va+la  + + +++          dv   k aglLHDiG +
  MMETSP1061-20121228|909_1  88 NIRQLGNAEYIYACaNHNRFQHSLGVAFLAEKMCKTIKEeqpelgatdkDVLCVKLAGLLHDIGHG 153
                478889988876541579***************986654222222233367789**********75 PP

>> TIGR00295  TIGR00295: TIGR00295 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.4e-05     0.012      12      56 ..     104     153 ..      94     164 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-05
  TIGR00295  12 esvvehclavakvalelaeeikkkgyev.....dvelvekGallhdiGra 56 
                 +  +h+l va  a ++++ ik+   e+     dv  v+  +llhdiG  
  MMETSP1061-20121228|909_1 104 HNRFQHSLGVAFLAEKMCKTIKEEQPELgatdkDVLCVKLAGLLHDIGHG 153
                45679****************9986553333338999***********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 2214.84
//
Query:       MMETSP1061-20121228|912_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1514.57
//
Query:       MMETSP1061-20121228|919_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.068    8.6  13.5      0.071    8.5   9.4    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.47    5.9  13.0       0.49    5.8   9.0    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   9.4   3.4e-05     0.071     317     384 ..       2      69 ..       1      71 [] 0.88

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 3.4e-05
  TIGR02169 317 eledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaael 384
                e+e  e++ +k  ae++++k  +ee e+++ e ++ r++ k+e+++++++ ++++aelee ++e +el
  MMETSP1061-20121228|919_1   2 EMEAEEKKFQKVVAELEETKLAKEESEGHVIELQVARDADKAEMEAKEKKFQKVVAELEESKAEKEEL 69 
                78888999999999999999999999999999999999999999999999999999999998888775 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.0   0.00024      0.49     850     915 ..       4      69 ..       1      71 [] 0.35

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00024
  TIGR02168 850 eeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkel 915
                e +e++ +++ ae+ee++ ++ee+e  + el+ ++++ ++++++ +++ +++ +el+e + +++el
  MMETSP1061-20121228|919_1   4 EAEEKKFQKVVAELEETKLAKEESEGHVIELQVARDADKAEMEAKEKKFQKVVAELEESKAEKEEL 69 
                333333333333444444444444444444444444444444444444444444444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       419  (0.102145); expected 82.0 (0.02)
Passed bias filter:                      253  (0.0616772); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 407.44
//
Query:       MMETSP1061-20121228|918_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.17
# Mc/sec: 939.45
//
Query:       MMETSP1061-20121228|924_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-10   36.4   7.8    0.00055   17.5   0.1    3.5  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.3   4.2e-06     0.017      16      25 ..       4      13 ..       4      14 .. 0.92
   2 !    9.4   0.2   4.7e-05      0.19       1      26 []      15      39 ..      15      39 .. 0.82
   3 !   17.5   0.1   1.3e-07   0.00055       1      23 [.      40      61 ..      40      61 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.2e-06
  TIGR02167 16 fdTsnVTnMs 25
               +dTs  TnM 
  MMETSP1061-20121228|924_1  4 WDTSRATNMV 13
               *********6 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 4.7e-05
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMss 26
               MF+g +s+    + n++++ V  M++
  MMETSP1061-20121228|924_1 15 MFMGATSFDR-HIGNWNVARVQKMTG 39
               7888888855.599*******99985 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 1.3e-07
  TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTn 23
               MF   ss+++ +l n+dTsnV n
  MMETSP1061-20121228|924_1 40 MFLQASSFEQ-PLQNWDTSNVRN 61
               8999999999.**********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1061-20121228|925_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   11.9   0.0      0.054   11.1   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.3e-05     0.054      33      96 ..     307     366 ..     297     374 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.3e-05
  TIGR02072  33 fepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkklsnvqficgdieklplekk 96 
                + ++ +L++G+GtG+    l++r  ++   a D+ +++  q   + ++  +  g+ie+++  ++
  MMETSP1061-20121228|925_1 307 L-QKPILEMGAGTGYWAWLLSQRGVDV--AAYDLPDSQSGQKH-RFRHSIVKDGSIEQVKAPEN 366
                3.479**********999999998777..89998887775544.44466777788888885554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2385.96
//
Query:       MMETSP1061-20121228|928_1  [L=809]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-11   39.8   5.8    1.6e-10   38.6   0.0    3.2  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    6.5e-06   23.5   0.0    0.00085   16.6   0.0    2.3  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    0.00026   18.3   0.0     0.0032   14.7   0.0    2.3  2  TIGR01258 pgm_1: phosphoglycerate mutase 1 family


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   2.8       1.2   1.7e+03      87     136 ..     119     168 ..     116     174 .. 0.83
   2 !   38.6   0.0   1.2e-13   1.6e-10      48     163 ..     522     665 ..     466     679 .. 0.67

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 1.2
  TIGR03162  87 ksydeisekypeldawakdlaharvpgGEsvadfsqRveefleelakeek 136
                ++++ i ++y +++  ++++ h++  +    a+  +R + ++++ +++++
  MMETSP1061-20121228|928_1 119 RRWSSIRDRYHDFHPKYQNWRHFEHCNEHDRARQRSREQLTMQQQQQHQQ 168
                79*******999999999****9999998888888888888888777743 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 1.2e-13
  TIGR03162  48 vsSplsRcrelAella............................eklklpiekddrLrEmdfGdwEgksydeisekypeldawakdlaharvpgGEsvadfsqRveefleelake....ekenvlivtHgGvirallahllglpleql 163
                + Sp  R+ e+ + +                              +l+l+ ++d+r+rE dfG+++  + ++  ++  e +++ +    +r+ +GEs +d+  Rv+ fl++l+++    +++n+++vtHg v+r+l+a+  ++++ ql
  MMETSP1061-20121228|928_1 522 MVSPYVRTVETFHGIVsawcdpespefasiqdhnrrvdawyqrlTELGLTWNEDPRIREQDFGNYQNPEATKRAKE--ERHRFGA--FYYRFNNGESGSDVFDRVSTFLDSLWRSfetnKSQNYVLVTHGIVLRVLMARYFRYTIGQL 665
                556666665555544445555666666666666666666665555889999**************99887777777..6666665..558899******************99877667899***************99887776665 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.2e-07   0.00085       2     166 ..     466     660 ..     465     679 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.2e-07
  TIGR03848   2 vllvrhgrstantaktLaGrtp..GveLderGreqaaalaerladlpia.....aivssPlercretveaiaear............................glevavderltevdYGdWtGrelkeLakeeLwkvvqahpsaavfPgGealaevqaravaavreldarleeehgpdavwvavshgDviksvladalGl 166
                ++l+rhg+s  n+ +++   tp   + +++ G eqa+++ + l+d  ++     + + sP  r+ et + i++a                             gl+ + d+r+ e d+G+++  e ++ akee  +     +   +f +Ge+ ++v  r+ + +++l + +e+  ++++ +v+v+hg v++ ++a ++  
  MMETSP1061-20121228|928_1 466 LVLIRHGQSLGNVDERVYATTPdnAMPITDLGWEQARKAGRILKDKILNpnesvHFMVSPYVRTVETFHGIVSAWcdpespefasiqdhnrrvdawyqrltelGLTWNEDPRIREQDFGNYQNPEATKRAKEERHRFG---AFYYRFNNGESGSDVFDRVSTFLDSLWRSFET--NKSQNYVLVTHGIVLRVLMARYFRY 660
                6788888888888887777665225667888888888888877775443222225677888888888888888777777888888888888888888888888999999***********************988764...44579**********************99955..578889**************98765 PP

>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.4e-06    0.0032       2      52 ..     465     518 ..     464     542 .. 0.71
   2 ?    0.7   0.0     0.045        62     145     190 ..     609     655 ..     585     667 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.4e-06
  TIGR01258   2 klvlvrhGeseWnkenlf...tGWvdvelsekGkeeakeagkllkeeklefdva 52 
                klvl+rhG+s  n  ++    t    + +++ G e+a++ag++lk++ l+++  
  MMETSP1061-20121228|928_1 465 KLVLIRHGQSLGNVDERVyatTPDNAMPITDLGWEQARKAGRILKDKILNPNES 518
                8************8877522133445789*****************99987643 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.045
  TIGR01258 145 lPlteslkdtvervlPywedeiap.elksgkrvlivahGnslralvk 190
                  ++es  d+ +rv  + +      e +++++ ++v+hG  lr l+ 
  MMETSP1061-20121228|928_1 609 FNNGESGSDVFDRVSTFLDSLWRSfETNKSQNYVLVTHGIVLRVLMA 655
                567889999999998887665433255666788999*******9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       416  (0.101414); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.59
# Mc/sec: 1809.82
//
Query:       MMETSP1061-20121228|926_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.5e-116  386.1   0.3   4.9e-116  385.6   0.2    1.1  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.3e-84  282.6   0.1    1.8e-84  282.1   0.1    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
      1e-75  253.3   0.1    1.7e-75  252.6   0.0    1.3  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.1e-55  187.2   0.2    1.5e-55  186.7   0.1    1.1  1  TIGR03689 pup_AAA: proteasome ATPase
    1.8e-07   28.3   0.5    0.00025   17.9   0.0    2.2  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    3.4e-07   27.0   0.0    5.5e-07   26.3   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    5.4e-05   20.0   0.1    0.00017   18.4   0.1    1.9  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    7.2e-05   19.8   0.1    0.00012   19.0   0.1    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
    0.00022   18.2   0.0    0.00034   17.6   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00053   16.9   0.0    0.00082   16.3   0.0    1.2  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00074   15.9   0.1     0.0012   15.2   0.0    1.3  1  TIGR00763 lon: ATP-dependent protease La
      0.004   13.5   0.1     0.0066   12.8   0.0    1.2  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
      0.007   14.2   0.1      0.015   13.1   0.0    1.5  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0079   12.7   0.0      0.014   11.8   0.0    1.3  1  TIGR02902 spore_lonB: ATP-dependent protease LonB
  ------ inclusion threshold ------
      0.011   12.1   0.1      0.018   11.4   0.0    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein
      0.013   12.8   0.0      0.022   12.1   0.0    1.3  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
      0.037   10.1   0.1       0.29    7.1   0.0    2.0  2  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  385.6   0.2    2e-118  4.9e-116      56     363 ..     130     439 ..     121     440 .. 0.97

  Alignments for each domain:
  == domain 1    score: 385.6 bits;  conditional E-value: 2e-118
  TIGR01242  56 ervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrld..sstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                ++ v++ ++  kfvv + + +   +++ G rv +++  ++i   lp + dp+v  + ve++p+v+y+d+GG ++ ++++re++e pl +pe f  +GieppkG+llyGppGtGktl a+ava++t+a firv+gselv+ky+GeGar+vre+f +a+ k  +i+f de+dai+  r     + + d evqrt+lq+++eldGfd+rgn+kv+ atnr+d ldpal+rpGr+dr +e  lpdleGr +ilkih+++m+   d+ +e +a+l   ++Ga+l +++teaGmfair +r+ v+ +dfl++v+kv
  MMETSP1061-20121228|926_1 130 NKYVINVKQIAKFVVGLGEKVAPTDIEEGMRVGVDRSKYSIQIPLPPKIDPTVSLMTVEDKPDVTYDDVGGAKEAMEKLREVLETPLLHPERFVTLGIEPPKGILLYGPPGTGKTLTARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKRACIVFFDEVDAIGGARGGggDDNGSDNEVQRTMLQIVTELDGFDARGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRGHILKIHSKRMNCDRDIRFELIARLCPNTTGAELHSVCTEAGMFAIRARRKSVSEKDFLESVNKV 439
                56778888889*****************************************************************************************************************************************************************9999742267889****************************************************************************************************************************9 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  282.1   0.1   7.5e-87   1.8e-84      45     304 ..     185     447 ..     178     452 .. 0.97

  Alignments for each domain:
  == domain 1    score: 282.1 bits;  conditional E-value: 7.5e-87
  TIGR01241  45 lleeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag..lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekks 304
                ++ e+k+ vt++dv G++ea e l e+++  L +p++f  lG   PkG+ll+GpPGtGktL a+ava   +  f+++ Gs++v+ +vG Ga  vr+lf+ a+++  ci+f De+Da+G +rg g    g+ +e+++t+ q+++e+DGf+++ ++ vl atnrpd LD+aL+rPGr+Dr+v   +Pdl+gr +ilk+h+k+++ ++++  + +ar  p  +Ga+l  ++ ea ++a r ++k+v+ k++ e+v++vi G +k s
  MMETSP1061-20121228|926_1 185 MTVEDKPDVTYDDVGGAKEAMEKLREVLETpLLHPERFVTLGIEPPKGILLYGPPGTGKTLTARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKRACIVFFDEVDAIGGARGGGgdDNGSDNEVQRTMLQIVTELDGFDARGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRGHILKIHSKRMNCDRDIRFELIARLCPNTTGAELHSVCTEAGMFAIRARRKSVSEKDFLESVNKVIKGYKKFS 447
                67789**********************985599*****************************************************************************************99777788999*****************************************************************************************************************************99876 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  252.6   0.0   7.1e-78   1.7e-75     436     692 ..     179     440 ..     143     450 .. 0.85

  Alignments for each domain:
  == domain 1    score: 252.6 bits;  conditional E-value: 7.1e-78
  TIGR01243 436 epsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlseavtd....rivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksva.kekleaeekei 692
                +p++    + + p+v ++d+gg +e+ ++lre +e pl ++e f  lgi ppkg+ll+gppgtgktl a+ava+ ++a fi v g e++ k+vge  + +re+f  ar    +i+f+de+dai  arg   +++ +d    r + q++teldg++   ++ v+ atnrpd ldpal+rpgrldr +    pd e r +i+kih+++++   d+ +e +a+     tga++++v+ ea + a+r   ksv+ k+ le+++k i
  MMETSP1061-20121228|926_1 179 DPTVSLMTVEDKPDVTYDDVGGAKEAMEKLREVLETPLLHPERFVTLGIEPPKGILLYGPPGTGKTLTARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFTMARSKRACIVFFDEVDAIGGARGGGGDDNGSDnevqRTMLQIVTELDGFDARGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRGHILKIHSKRMNCDRDIRFELIARLCPNTTGAELHSVCTEAGMFAIRARRKSVSeKDFLESVNKVI 440
                5555444455679999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999876555544411116777999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988886255677765544 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.7   0.1   6.3e-58   1.5e-55     120     377 ..     131     381 ..     111     402 .. 0.87

  Alignments for each domain:
  == domain 1    score: 186.7 bits;  conditional E-value: 6.3e-58
  TIGR03689 120 ralvvdkadeervvklagalaeeklraGdsllvdlkaglale.av.pks..eveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsG...vssdvet.tvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilaky 377
                + ++  k+  + vv l +++a + +++G ++ vd++  ++++  + pk    v+ + +e+ Pdvty+d+GG ++ +e++r+ +e P+lh+e +   +++pPkG+llyGPPG+Gktl a+avan           + + f+ + G el++kyvGe  r +r +f  ar k    r  +vffde+d++  +rG G     sd e    + q+++eldG ++  n+ v+ a+nr d +dPa++rPGrld k+  + Pd e+  +il+ +
  MMETSP1061-20121228|926_1 131 KYVINVKQIAKFVVGLGEKVAPTDIEEGMRVGVDRSK-YSIQiPLpPKIdpTVSLMTVEDKPDVTYDDVGGAKEAMEKLREVLETPLLHPERFVTLGIEPPKGILLYGPPGTGKTLTARAVANR----------TDACFIRVIGSELVQKYVGEGARMVRELFTMARSK----RACIVFFDEVDAIGGARGGGgddNGSDNEVqRTMLQIVTELDGFDARGNIKVLMATNRPDTLDPALMRPGRLDRKVEFGLPDLEGRGHILKIH 381
                5566666777889999999999999999999999754.3333133134322588899****************************************************************983..........4689***************************9987....669**************998444468877524677*************************************************999998766 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     1e-06   0.00025      47     103 ..     230     284 ..     226     288 .. 0.89
   2 !    9.3   0.1   0.00044      0.11     244     284 ..     286     327 ..     282     340 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1e-06
  TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvda 103
                Pk il+ G+ G Gkt  ar +a  ++a fi+v  +   +  yvG     +vr+l  +
  MMETSP1061-20121228|926_1 230 PKGILLYGPPGTGKTLTARAVANRTDACFIRVIGSELVQ-KYVGEG-ARMVRELFTM 284
                9********************************999886.699965.5799998765 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00044
  TIGR00390 244 rveesGiifideidkiakkg.essgadvsreGvqrdllPive 284
                r  +  i+f de+d i         ++ s + vqr +l iv 
  MMETSP1061-20121228|926_1 286 RSKRACIVFFDEVDAIGGARgGGGDDNGSDNEVQRTMLQIVT 327
                667889**********8665155556679999*******995 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.3e-09   5.5e-07     284     400 ..     201     314 ..     197     333 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.3e-09
  TIGR03922 284 vkeqvaalkssvevalvRaerGlavaqr.skHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdgakddfGl 400
                +ke++++l++ +e  l+  er ++   +  k +ll GPPGtGkt +Ar+va+             + v  ++l+ +y+ge +    el   a  +   ++F+DE+ a+   r g +dd G 
  MMETSP1061-20121228|926_1 201 AKEAMEKLREVLETPLLHPERFVTLGIEpPKGILLYGPPGTGKTLTARAVANRT-------DACFIRVIGSELVQKYVGEGARMVRELFTMARSKracIVFFDEVDAIGGARGGGGDDNGS 314
                67777777777777777777776665441578999****************985.......34556788899*************99988776433339********99999998888885 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   6.9e-07   0.00017      38      64 ..     228     254 ..     190     261 .. 0.88
   2 ?   -3.6   0.0       3.4   8.2e+02     124     141 ..     284     301 ..     277     302 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.9e-07
  TIGR02928  38 srpsnvliyGktGtGKtavtkkvlkel 64 
                + p+ +l+yG++GtGKt+++++v ++ 
  MMETSP1061-20121228|926_1 228 EPPKGILLYGPPGTGKTLTARAVANRT 254
                57899******************9975 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.4
  TIGR02928 124 leeredsliivLDEiDkl 141
                + +++ + i+  DE+D +
  MMETSP1061-20121228|926_1 284 MARSKRACIVFFDEVDAI 301
                45677889999****986 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.1   5.1e-07   0.00012      46     124 ..     234     310 ..     201     344 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 5.1e-07
  TIGR02881  46 ifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikka...lGGvlfideaysl..arGGekd 124
                ++ G PGtGkt  ar +a+            +i v  ++lv +y+G+ a+ +re+   a      ++f de  ++  arGG  d
  MMETSP1061-20121228|926_1 234 LLYGPPGTGKTLTARAVANRT-------DACFIRVIGSELVQKYVGEGARMVRELFTMArskRACIVFFDEVDAIggARGGGGD 310
                67899************9864.......56688899999***************876551125689****97665448987644 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.4e-06   0.00034     119     219 ..     232     325 ..     223     329 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.4e-06
  TIGR00382 119 nilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksenasitrdvsGeGvqqallkl 219
                 ill Gp G+Gktl a+++a++ d  f     + l +  yvGe    ++ +l+  a       +  i++ de+d i     +     + s + vq+++l++
  MMETSP1061-20121228|926_1 232 GILLYGPPGTGKTLTARAVANRTDACFIRVIGSELVQ-KYVGEGAR-MVRELFTMAR----SKRACIVFFDEVDAIGGARGGG-GDDNGSDNEVQRTMLQI 325
                59*************************8888888876.7****975.6678877765....34568********997554333.23444556666666666 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   3.4e-06   0.00082      31      69 ..     231     270 ..     225     304 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.4e-06
  TIGR00635  31 dhvllyGPPGlGkttlakiiakelgvk.lkitsgpalekp 69 
                  +llyGPPG Gkt  a+ +a+  ++  ++++ +  ++k 
  MMETSP1061-20121228|926_1 231 KGILLYGPPGTGKTLTARAVANRTDACfIRVIGSELVQKY 270
                569*******************998642788877777764 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.9e-06    0.0012     356     384 ..     233     261 ..     228     312 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.9e-06
  TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrl 384
                + l+GPPG GKt  a+++A+ ++ +f+r+
  MMETSP1061-20121228|926_1 233 ILLYGPPGTGKTLTARAVANRTDACFIRV 261
                789*************************7 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.7e-05    0.0066     175     197 ..     230     252 ..     223     259 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.7e-05
  TIGR02903 175 pqhiilyGppGvGkttaarlale 197
                p+ i+lyGppG Gkt +ar + +
  MMETSP1061-20121228|926_1 230 PKGILLYGPPGTGKTLTARAVAN 252
                889****************8765 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       8.9   2.1e+03     110     126 ..      30      62 ..       8      71 .. 0.56
   2 !   13.1   0.0   6.3e-05     0.015     169     215 ..     200     247 ..     180     255 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 8.9
  TIGR03499 110 e................eelrkelkalkellek 126
                +                ++l++e+k+ +  +++
  MMETSP1061-20121228|926_1  30 DiallksyglgpystliKDLEEEIKKHQTEVKN 62 
                244555555555555555555555555555554 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 6.3e-05
  TIGR03499 169 daeeareklreaLekklsvkk.eedeilekggviaLvGptGvGKTTTl 215
                 a+ea+eklre+Le  l + + + +   e ++ i+L Gp+G GKT T 
  MMETSP1061-20121228|926_1 200 GAKEAMEKLREVLETPLLHPErFVTLGIEPPKGILLYGPPGTGKTLTA 247
                578999********9985544134445688899************996 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   5.8e-05     0.014      86     109 ..     230     253 ..     221     264 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.8e-05
  TIGR02902  86 pqhviiyGppGvGktaaarlvlee 109
                p+ +++yGppG Gkt +ar v + 
  MMETSP1061-20121228|926_1 230 PKGILLYGPPGTGKTLTARAVANR 253
                78899**************99765 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.4e-05     0.018     202     231 ..     221     250 ..     215     256 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.4e-05
  TIGR00368 202 raleiaaaGghnllllGPPGsGktllakrl 231
                r +++ +     +ll GPPG+Gktl a+ +
  MMETSP1061-20121228|926_1 221 RFVTLGIEPPKGILLYGPPGTGKTLTARAV 250
                5566666667789*************9986 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   9.1e-05     0.022      24      56 ..     233     265 ..     220     282 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 9.1e-05
  TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                + l GP GtGkt  a++va++ d   + + G +
  MMETSP1061-20121228|926_1 233 ILLYGPPGTGKTLTARAVANRTDACFIRVIGSE 265
                7799*******************9999999975 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0012      0.29     568     618 ..     198     252 ..     184     256 .. 0.66
   2 ?    0.4   0.0      0.12        30     274     301 ..     283     310 ..     272     317 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0012
  TIGR03345 568 vvGqdealeaiaerirtarAgled.....pkkPlgvFllvGpsGvGktetalalAe 618
                v G +ea+e++ e ++t   + e+      + P+g+ ll Gp G+Gkt ta a+A+
  MMETSP1061-20121228|926_1 198 VGGAKEAMEKLREVLETPLLHPERfvtlgIEPPKGI-LLYGPPGTGKTLTARAVAN 252
                556666666666666654332222111113446665.899**************97 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.12
  TIGR03345 274 evkasekpiilFiDeaHtliGaGgqaGq 301
                 + +s+++ i+F De+ ++ Ga g  G 
  MMETSP1061-20121228|926_1 283 TMARSKRACIVFFDEVDAIGGARGGGGD 310
                567899***********99888766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 1467.98
//
Query:       MMETSP1061-20121228|929_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   22.4   0.0    1.5e-05   21.9   0.0    1.2  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit


Domain annotation for each model (and alignments):
>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.6e-09   1.5e-05      78     194 ..      97     227 ..      88     345 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.6e-09
  TIGR03204  78 eelqaapapqplafgvsmvgpviytfgneeqkkrflprianvddwwcqgfsepgsgsdlaslktka....e....kkgdkyiing.....qktw.ttlaqhadlifclcrtdatakkqegisfilvdmksk 194
                  l+a+    pl++   m  p i ++ +eeq+ r+lp   +     c   +e g gs++ +l t a    e    +kg  +iin      +k w  tl + a+  +++++      k++gi   lv ++s 
  MMETSP1061-20121228|929_1  97 TILEAVADDIPLSLHWVMFVPNIVSLCDEEQQSRWLPLCRDWKMIGCYAQTELGHGSNIRALETTAtflpEskggQKGGSWIINSptltsRKFWpGTLGKTANHAMVIAQLIDGKGKRHGIHNFLVPLRSM 227
                55677777889****************************9999999****************987633332323378999***963333378895599999999999999888888999999888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.47
# Mc/sec: 2002.30
//
Query:       MMETSP1061-20121228|932_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.14s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 277.18
//
Query:       MMETSP1061-20121228|930_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1833.18
//
Query:       MMETSP1061-20121228|933_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       621  (0.15139); expected 82.0 (0.02)
Passed bias filter:                      318  (0.0775232); expected 82.0 (0.02)
Passed Vit filter:                        69  (0.0168211); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.41
# Mc/sec: 244.66
//
Query:       MMETSP1061-20121228|934_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    6.9  26.4        1.7    6.8  18.3    1.1  1  TIGR02926 AhaH: ATP synthase archaeal, H subunit
        1.9    4.7  12.0        2.1    4.5   8.3    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR02926  AhaH: ATP synthase archaeal, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  18.3   0.00084       1.7      16      81 ..       6      71 ..       1      73 [] 0.89

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00084
  TIGR02926 16 eeAkeerkqriaeAreeAkelleeaeeeAeklkeeileeaeeeiekEaekIleegekeieelkskA 81
               ++A +++++  a A ++A+el+  a ++Ae++k++  +e ++ + k ae+ ++++ + +eel s+A
  MMETSP1061-20121228|934_1  6 AAAGKKAEEFRARAAQKAEELRSAALKKAEEEKKRAEAEVRAAAGKKAEEFRARAAQKAEELRSAA 71
               4567888999999*************************************************9998 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   8.3     0.001       2.1      21      80 ..      10      69 ..       2      71 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.001
  TIGR03319 21 kiaekkleeaeeeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqk 80
               k ae+ + +a ++a+++ + a k+ae++kk a  e++  + k+ ee+ + + ++ +el++
  MMETSP1061-20121228|934_1 10 KKAEEFRARAAQKAEELRSAALKKAEEEKKRAEAEVRAAAGKKAEEFRARAAQKAEELRS 69
               5566777889999999999999***************99999999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       342  (0.083374); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 275.29
//
Query:       MMETSP1061-20121228|931_1  [L=1711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    4.3  24.3      0.019   10.9   0.1    4.5  4  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0    0.0079        32     179     212 ..     587     620 ..     558     621 .. 0.55
   2 ?   10.9   0.1   4.6e-06     0.019     132     205 ..     654     749 ..     590     799 .. 0.78
   3 ?   -0.6   0.0     0.014        56      63     222 ..     762     798 ..     754     828 .. 0.53
   4 ?  -12.4  13.7         1   4.1e+03     669     743 ..     912     984 ..     873    1005 .. 0.58

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.0079
  TIGR00870 179 espLnlaaclasesivsllsedpAdiltadslgn 212
                e pL +aa  + ++ v+ l++++Ad+++  + g+
  MMETSP1061-20121228|931_1 587 ETPLLIAANNGHKAAVEALLKHGADPSLCSEAGW 620
                3566666666666666666666666666655555 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 4.6e-06
  TIGR00870 132 italilAihkq...nyeivklLlekgasve.........................arakgdefvksqekdslyhgespLnlaaclasesivsllsedpAdil 205
                 t+l+ A        +e vklLle+ a+v+                         +ra  d ++ +++      g spL++aa  +  ++v+ll+e++A  +
  MMETSP1061-20121228|931_1 654 STPLHKACAGSkpgHLEAVKLLLESNADVHalnkwretplltaanhgqagavellLRAGADPCKCTDT------GWSPLSIAAYKGHDEVVKLLLEEGAPTE 749
                36677665543111588888888888888888888888888877777777777777777777777777......8888888888888888888888886555 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.014
  TIGR00870  63 aieneneelteLllkkeegevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasvearakgdefvksqekdslyhgespLnlaaclasesivsllsedpAdiltadslgntllhllvies 222
                a +                                                                                                                           + ++ v+ll++++Ad   + + g t l +lv ++
  MMETSP1061-20121228|931_1 762 ATK---------------------------------------------------------------------------------------------------------------------------GLPDTVELLLQHGADHTVTTKKGDTALSILVEQN 798
                333...........................................................................................................................3344455555555555555444444444444443 PP

  == domain 4    score: -12.4 bits;  conditional E-value: 1
  TIGR00870 669 kklgkkrerrarrveevnwktierkaetlsekpgtrsqkvmkrlikryvlaeqrkrkdeevteeetkelkqdiss 743
                k+++k+rer+ ++ +e   k+ e+k e+ ++k+ +  ++  +r  ++ ++a+qrk++ ee +++++k ++q+++ 
  MMETSP1061-20121228|931_1 912 KRKKKERERQLKKEQEERRKA-EEKEEEERRKRIQDAKDAAEREERERLAAAQRKEE-EENRKKQEKAMRQQQQK 984
                333333333333333333333.22223333333345666666666666677777666.44444444455554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1711 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       556  (0.135544); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.57u 0.24s 00:00:01.81 Elapsed: 00:00:01.72
# Mc/sec: 1312.98
//
Query:       MMETSP1061-20121228|939_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 197.98
//
Query:       MMETSP1061-20121228|942_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.8   2.8        0.4    8.7   0.1    3.1  3  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639


Domain annotation for each model (and alignments):
>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0    0.0064        26       6      17 ..       1      12 [.       1      13 [. 0.86
   2 ?   -1.0   0.0       0.1   4.2e+02      11      19 ..      45      53 ..      27      59 .. 0.57
   3 ?    8.7   0.1   9.7e-05       0.4       3      21 ..     110     128 ..     101     132 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0064
  TIGR01639  6 lskkltkEelne 17
               ++++lt+E++ e
  MMETSP1061-20121228|942_1  1 MADQLTEEQIAE 12
               579*******87 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.1
  TIGR01639 11 tkEelneli 19
               t+ el ++i
  MMETSP1061-20121228|942_1 45 TEAELMDMI 53
               444555555 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 9.7e-05
  TIGR01639   3 yndlskkltkEelnelins 21 
                 ++l  kl++Ee +e+i++
  MMETSP1061-20121228|942_1 110 MTNLGEKLSDEEVDEMIRE 128
                578999***********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 702.37
//
Query:       MMETSP1061-20121228|946_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.2   0.6      0.027   11.9   0.4    1.1  1  TIGR01111 mtrA: tetrahydromethanopterin S-methyltransferase, subunit A


Domain annotation for each model (and alignments):
>> TIGR01111  mtrA: tetrahydromethanopterin S-methyltransferase, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   6.6e-06     0.027     131     175 ..      55      99 ..      42     104 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.6e-06
  TIGR01111 131 evvdlidvedvdaitkkvkelvekdpGafdeepliieleeegeee 175
                e v++  ved++ +t++++e ++k  Ga ++e  +   e +  ee
  MMETSP1061-20121228|946_1  55 EDVEVSSVEDLGSLTSQLEEALKKSGGAKEDEFEMTPEEIKRLEE 99 
                5688889********************988774333222233233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 447.06
//
Query:       MMETSP1061-20121228|949_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       456  (0.111165); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 913.77
//
Query:       MMETSP1061-20121228|951_1  [L=785]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-26   89.2   0.0    1.4e-24   84.5   0.0    2.1  1  TIGR01979 sufS: cysteine desulfurase, SufS family
    9.9e-13   45.8   0.0    2.4e-12   44.5   0.0    1.6  2  TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
    1.8e-10   38.2   0.0    2.2e-09   34.6   0.0    2.5  2  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
    4.6e-07   27.3   0.0    7.7e-07   26.5   0.0    1.3  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
    6.7e-07   26.7   0.0    1.5e-06   25.6   0.0    1.6  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
    0.00045   17.1   0.0     0.0008   16.3   0.0    1.4  1  TIGR02006 IscS: cysteine desulfurase IscS
  ------ inclusion threshold ------
      0.036   10.7   0.0      0.059   10.0   0.0    1.2  1  TIGR00474 selA: L-seryl-tRNA selenium transferase


Domain annotation for each model (and alignments):
>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0   2.4e-27   1.4e-24      18     298 ..     109     435 ..     105     542 .. 0.73

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 2.4e-27
  TIGR01979  18 plvYLDsaatsqkPkaVida.veeyyeksnanvhRgvhtlseeateayeeaRekvakfinAksa....eeivf.t.kgateslNlvaaslgesslke..............gdeivvseleHHanivpwqllakrkgaklkvieldedg.tldleeleelltektk........lvaithvsNvlGtvnpveeiiklahevgalvlvDgaqavphlkvdvk...........eldvDflvfsgHKllgptG..iGvLygkkelLeklpP..fegGGemieevsleestya.elPlkfEaGtpniagvvglg..aaieylekiglekiea 298
                p++Y D +a s++P + i++ +++     ++n h  +     ++++ + eaR+ +a+  nAk +    +++v+ + +g+t ++ l+  +lg +++++                 iv+   eHH+n++pw++l    +  ++  +l++dg t+d+++le++l ++ k        + ++++ sNv+Gtv +   i+kl+h++gal   D a +++ l+v+ +           ++  D + fsgHKllg  G   GvL +kk l+ +l+P     GG  +  v++++  +  +   ++E+Gtpn+ g+  lg    ++   ki + ki +
  MMETSP1061-20121228|951_1 109 PMIYCDFTA-SHRPLKSIENyIRQTCLPFYGNTHTNTSVTGGQSSAFVSEARQIIAEVCNAKITgkasQDVVLfAgNGTTGAVRLLIDCLGLKHFSNsnttasgddttrgrKPLIVLGPFEHHSNLLPWRELGGD-KFVIETAKLTRDGsTVDMNDLERILVSHRKsnpdcpfmIGSFSAASNVTGTVVDDIAITKLLHKHGALSFWDYATGASYLNVNANptpsspddkaaDIAKDAVFFSGHKLLGGGGgtPGVLIVKKRLVSSLNPpgQACGGGTVFYVTQDRHRFLsDRIERYEGGTPNVVGIWRLGlvWRLKLSLKIAAGKILS 435
                688999887.57787666651566677789*******************************86555556666514357999************9999999***99999987788*****************9875.6889999999776389*******998776655555554679***********************************9999997532222222222278889**********9987444*************8844468999999999999888615678***********96554004455555555555544 PP

>> TIGR03392  FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   4.2e-15   2.4e-12     109     281 ..     222     418 ..     111     447 .. 0.72
   2 ?   -2.6   0.0      0.87   5.1e+02     332     361 ..     501     531 ..     449     539 .. 0.63

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 4.2e-15
  TIGR03392 109 iivseaehhanlipwlmva.eqtGakvvklplgadklpdiellpelltkktr........llalsqmsnvtGGapdlariialahkagavvvvdGaqGvvhl.....p....advqaldi..dfyafsghklygptG..iGvlyGktelleampp...wqGGGkmlsevsf.dgfipqavpfrfeaGtpniaGviGlsa 281
                i++   ehh+nl+pw  +  ++   +  kl  + +   d++ l ++l ++ +        + ++s  snvtG ++d  +i++l hk+ga+   d a G+ +l     p    +d +a di  d   fsghkl g  G   Gvl  k  l+ +++p     GGG ++  +   + f+++    r+e Gtpn+ G+  l  
  MMETSP1061-20121228|951_1 222 IVLGPFEHHSNLLPWRELGgDKFVIETAKLTRD-GSTVDMNDLERILVSHRKsnpdcpfmIGSFSAASNVTGTVVDDIAITKLLHKHGALSFWDYATGASYLnvnanPtpssPDDKAADIakDAVFFSGHKLLGGGGgtPGVLIVKKRLVSSLNPpgqACGGGTVFYVTQDrHRFLSDR-IERYEGGTPNVVGIWRLGL 418
                677788*********977514555666666544.456688888887766544334444435578999******************************98664111221222268899999556777*******98773359***********976332347777666554414566665.57***********976543 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.87
  TIGR03392 332 dvhhsdlvallae.sgialraGqhcaqplla 361
                 +h + + all +  gi  r G  ca p  +
  MMETSP1061-20121228|951_1 501 FLHYNYVCALLNDvFGIQSRGGCQCAGPYSQ 531
                378888889998735999********99765 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   3.8e-12   2.2e-09      29     256 ..     138     416 ..     111     447 .. 0.65
   2 ?   -1.6   0.0      0.39   2.3e+02     315     338 ..     503     526 ..     477     536 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 3.8e-12
  TIGR01977  29 gsagrgserlalrasreveetReelaklfnve.....ekakvvFtnnatt.alNialkG.ilk.................egkhvittslEHnaVlRpleklkeelgvevtivkaeeeg.lvdvekikkai....kkdtk..liv..lshaSNvtGtilpieeiaelakekgilflvDaaqtaGvleidve...........klaidllaftGHKgLlgpqGiggllikekiklkpll.....s.GGtGsnSasleqpselPd...rfeaGtlNtlgiagL 256
                g++    + +  ++s  v+e+R+++a++ n++     ++  v+F+ n tt a+ +++    lk                 ++  ++  ++EH++ l p ++l    +  ++ +k +++g +vd++++++ +    k++++   ++   s aSNvtGt+ +   i++l +++g l   D a  a  l+++++             a d++ f+GHK L g  G+ g+li  k+ ++ l        GGt       +   +l d   r+e Gt N+ gi  L
  MMETSP1061-20121228|951_1 138 GNTHTNTSVTGGQSSAFVSEARQIIAEVCNAKitgkaSQDVVLFAGNGTTgAVRLLIDClGLKhfsnsnttasgddttrgRKPLIVLGPFEHHSNLLPWRELGGD-KFVIETAKLTRDGsTVDMNDLERILvshrKSNPDcpFMIgsFSAASNVTGTVVDDIAITKLLHKHGALSFWDYATGASYLNVNANptpsspddkaaDIAKDAVFFSGHKLLGGGGGTPGVLIVKKRLVSSLNppgqaCgGGTVF-YVTQDRHRFLSDrieRYEGGTPNVVGIWRL 416
                3555566666678888899999999988887533332455678888866524555544322222444444444333333345569999**************998.77888888888874678887776542222455552233323689********9999999***********************9863333332221123447899*************998888888877775222212133333.334455556665222799*********755 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.39
  TIGR01977 315 dseevaaildekfdivvRaGlHCa 338
                + + v a+l+  f+i  R G  Ca
  MMETSP1061-20121228|951_1 503 HYNYVCALLNDVFGIQSRGGCQCA 526
                55679999***************9 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.3e-09   7.7e-07       1     218 [.     112     371 ..     112     384 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.3e-09
  TIGR03235   1 YLDvnattpvdpevaevvrpflleefGnassrthefgakakkavekarkqvaealgad......keevifts.gatesnnlal..lGlaeygeqk..........gkkh.iitsaiehkavlepikfLeenGftvtylevdesG.ridveelkeai...r...edt..llvslmavnnevGslqpireiaevleerevflhvDaaqvvgkiavdl.........sakri..dlisvsghkiygPkG..iGalvirkrrkk 218
                Y D +a+ + ++ + + +r+  l  +Gn+  +t   g ++   v +ar+ +ae+ +a+      ++ v+f++ g+t +  l +  lGl+++ +++          g+k  i+    eh++ l p + L  + f +++++   +G  +d+++l++ +   r   +d   ++ s  a+ n +G++ + ++i+++l++++++   D a + ++++v+          +a +i  d +  sghk+ g  G   G+l+++kr  +
  MMETSP1061-20121228|951_1 112 YCDFTASHRPLKSIENYIRQTCLPFYGNTHTNTSVTGGQSSAFVSEARQIIAEVCNAKitgkasQDVVLFAGnGTTGAVRLLIdcLGLKHFSNSNttasgddttrGRKPlIVLGPFEHHSNLLPWRELGGDKFVIETAKLTRDGsTVDMNDLERILvshRksnPDCpfMIGSFSAASNVTGTVVDDIAITKLLHKHGALSFWDYATGASYLNVNAnptpsspddKAADIakDAVFFSGHKLLGGGGgtPGVLIVKKRLVS 371
                8899*************************************************99865333332677788863677788887655899999754211222222226665266789**************************999559****999873332111332335679999*********999*******************999987765222221111333443366778999988766633488888887654 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.6e-09   1.5e-06     106     241 ..     219     375 ..     102     384 .. 0.66

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.6e-09
  TIGR01976 106 gdEvivtrldheaNispWlqaaedagakvkwaevdeadgeleeadlaa.llsdrTR.......LVAvtaasnllGsivdlaaltelvhaaGalvvvDavhyaphali.........Dvqalg..aDllvcsaykffg...PhlGilvvraellkslkp 241
                +  +++  ++h++N  pW+++  d   ++  a++  +  +++ +dl+  l+s+r         +    aasn++G++vd  a+t+l h+ Gal + D    a++  +         D +a +   D + +s++k +g      G+l+v++ l++sl+p
  MMETSP1061-20121228|951_1 219 KPLIVLGPFEHHSNLLPWRELGGD-KFVIETAKLTRDGSTVDMNDLERiLVSHRKSnpdcpfmIGSFSAASNVTGTVVDDIAITKLLHKHGALSFWDYATGASYLNVnanptpsspDDKAADiaKDAVFFSGHKLLGgggGTPGVLIVKKRLVSSLNP 375
                23488999***********87775.57789999*9999********87256766533333332557899****************************9999998755111111111333333114777777777765111345667777766666655 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-06    0.0008       5     222 ..     111     371 ..     106     385 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.4e-06
  TIGR02006   5 iyldyaattpvdkrvaekmleyltvkfGnpasrshkfGweaeeavenarkevaeligad.....sreivfts..Gatesdnlaik..Gvakfyks............kgkhiitsktehkavldtcrelereGfevtylevkedG.lidleelkaairddt........ilvsvmavnneiGviqdiaaigelcrerkvlfhvdaaqsvGkvpidle...........elkvdllslsahkiyGpkGi..Galyvrrkprv 222
                iy d++a+    k + + + +  +  +Gn ++++   G ++   v +ar+ +ae+ +a      s+++v  +  G+t +  l i   G+ +f +s            ++  i+    eh + l   rel  + f +   ++ +dG  +d+++l++ +  +         ++ s  a  n +G++ d  ai++l  ++  l   d a +   ++++ +           ++  d + +s+hk+ G  G   G l v+++   
  MMETSP1061-20121228|951_1 111 IYCDFTASHRPLKSIENYIRQTCLPFYGNTHTNTSVTGGQSSAFVSEARQIIAEVCNAKitgkaSQDVVLFAgnGTTGAVRLLIDclGLKHFSNSnttasgddttrgRKPLIVLGPFEHHSNLLPWRELGGDKFVIETAKLTRDGsTVDMNDLERILVSHRksnpdcpfMIGSFSAASNVTGTVVDDIAITKLLHKHGALSFWDYATGASYLNVNANptpsspddkaaDIAKDAVFFSGHKLLGGGGGtpGVLIVKKRLVS 371
                788887764333334444444444449**************************9988743333388888654126788999999744788887652222222222112234666789*******************999999988579*****988754321123334377899999*****9999999**********************99997633333332222455678889999999876632366777766544 PP

>> TIGR00474  selA: L-seryl-tRNA selenium transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0001     0.059     237     308 ..     300     373 ..     289     376 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0001
  TIGR00474 237 lvelakekglpvleDlGSGll.vdlskyglpkEptvqevvkagvdlvtfSGDKlLGgp..QaGiivGkkeliekl 308
                +++l +++g + + D   G   +++++   p+ p   ++ +   d v fSG KlLGg     G+++ kk+l+++l
  MMETSP1061-20121228|951_1 300 ITKLLHKHGALSFWDYATGASyLNVNANPTPSSPD-DKAADIAKDAVFFSGHKLLGGGggTPGVLIVKKRLVSSL 373
                77899999999999999996514444444444444.3455666789*********87522679999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.55
# Mc/sec: 1883.84
//
Query:       MMETSP1061-20121228|953_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.18s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 289.36
//
Query:       MMETSP1061-20121228|954_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.26
# Mc/sec: 431.50
//
Query:       MMETSP1061-20121228|955_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19    9.7   2.7        2.6    6.1   0.0    3.0  3  TIGR03988 antisig_RsrA: mycothiol system anti-sigma-R factor


Domain annotation for each model (and alignments):
>> TIGR03988  antisig_RsrA: mycothiol system anti-sigma-R factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0    0.0083        34      26      41 ..     127     142 ..     112     147 .. 0.76
   2 ?   -2.0   0.2      0.21   8.6e+02      46      54 ..     193     201 ..     165     205 .. 0.54
   3 ?    6.1   0.0   0.00063       2.6      30      48 ..     222     240 ..     210     267 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0083
  TIGR03988  26 raHldeCseCleeygl 41 
                 +Hl +C +C    +l
  MMETSP1061-20121228|955_1 127 ITHLGACGTCSSLQDL 142
                57********987776 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.21
  TIGR03988  46 kslvkrkCg 54 
                k+++ ++Cg
  MMETSP1061-20121228|955_1 193 KKIIDKNCG 201
                556666665 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.00063
  TIGR03988  30 deCseCleeygleeevksl 48 
                  C +C+e++g+++++  +
  MMETSP1061-20121228|955_1 222 SGCGACIEQFGIDTRLELV 240
                57***********998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 1239.23
//
Query:       MMETSP1061-20121228|962_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0066   13.5  44.7      0.007   13.4  31.0    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4  31.0   1.7e-06     0.007     176     229 ..       2      51 ..       1      52 [] 0.34

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.7e-06
  TIGR02794 176 kaEaeeakkkaeaeakKakaeaeaKakaeeakaKaeae.....AkaKAeaeAkaKaeae 229
                kaEae  +k+ eaea KakaeaeaK kaee k+Kaeae     A      eAkaKaeae
  MMETSP1061-20121228|962_1   2 KAEAE--RKRLEAEA-KAKAEAEAKRKAEEEKRKAEAErkrleA------EAKAKAEAE 51 
                33333..55555555.3333333333333335555544223332......333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       319  (0.0777669); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 245.12
//
Query:       MMETSP1061-20121228|963_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 273.76
//
Query:       MMETSP1061-20121228|959_1  [L=853]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.64
# Mc/sec: 1759.17
//
Query:       MMETSP1061-20121228|964_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       395  (0.0962945); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 2195.19
//
Query:       MMETSP1061-20121228|956_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-16   56.3   0.0      1e-15   55.5   0.0    1.3  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    7.3e-14   49.3   0.0    1.2e-13   48.6   0.0    1.3  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    1.7e-12   45.1   1.3    1.6e-08   32.1   0.0    2.7  3  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    8.1e-12   43.0   0.0    1.8e-11   41.9   0.0    1.6  1  TIGR00231 small_GTP: small GTP-binding protein domain
    6.4e-09   33.2   0.0    0.00012   19.2   0.0    2.2  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    1.2e-07   29.2   0.0      2e-07   28.5   0.0    1.3  1  TIGR00436 era: GTP-binding protein Era
    2.9e-07   27.4   0.0    2.9e-07   27.4   0.0    2.2  1  TIGR00437 feoB: ferrous iron transport protein B
    4.4e-07   27.1   0.0    6.4e-07   26.6   0.0    1.2  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    1.3e-05   22.8   0.1    1.3e-05   22.8   0.1    2.2  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    2.9e-05   20.9   0.0    5.8e-05   19.9   0.0    1.4  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    0.00019   18.5   0.3     0.0061   13.5   0.0    2.4  2  TIGR00092 TIGR00092: GTP-binding protein YchF
    0.00065   16.5   0.0    0.00065   16.5   0.0    1.9  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0025   15.2   1.4      0.022   12.1   0.2    2.5  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
  ------ inclusion threshold ------
      0.016   12.1   0.0      0.027   11.4   0.0    1.3  1  TIGR00991 3a0901s02IAP34: GTP-binding protein
        5.2    3.1   8.5        6.4    2.8   5.9    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   3.7e-18     1e-15     174     377 ..     167     373 ..     121     377 .. 0.81

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 3.7e-18
  TIGR03594 174 epikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgkkylliDTAGirrkkkveekveklsvlrtlkaieradv...vllvlDategi...seqDlkiaglile..egkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaike..vyeslskristsklnrvleeavekhppplvkgk 377
                ++  i + G pNvGKS+++N++++ + v v++ a tT+     ++++k  ++++iDT Gi        ++e+  +++ + +i+ a++   vl+ +D++e++    eq  ++ + i+   ++k l++vvNK+D     ++l+  kke+ e l++ + + ++++S ++++gv+++  ++ e  +++++  r+s +k+  v+++++  hp+p  +  
  MMETSP1061-20121228|956_1 167 NTRTILMCGLPNVGKSSFMNKITRGN-VDVQPYAFTTKSLFVGHCDYKYLRWQVIDTPGILDH-----SLEERNTIEMQAIIALAHLtcsVLYFCDISEHCgytIEQQCSLFRSIKPlfANKQLILVVNKVDEQ-PWETLDPEKKEMIEALAKDANCSLMTMSNKSEHGVSEVKASACEklLASRVDARVSGKKIEGVMNRLQVFHPTPRDNVD 373
                34679999**************9876.6789*****************************654.....4555555555555555555222456678887652225899999999974449*************9.99************************************98875423678899*********************998765 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   4.3e-16   1.2e-13     162     326 ..     173     338 ..     169     341 .. 0.78

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 4.3e-16
  TIGR02729 162 lvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvveveeeksfvlaDiPgliegasegag.LGleF...LkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidllee....eeleellkelkeelekkvlaisaltkegleellkklle 326
                + Glpn+GkS++++++++ +  +  Y FtT +  +G  +++   ++ + D Pg+++   e ++ + ++    L H+  t  +l++ d+se+    +  ++e+  + +++ ++ +a+k+ ++v+nk+d +       e +e++++l+++ + +++++s  +++g++e++++  e
  MMETSP1061-20121228|956_1 173 MCGLPNVGKSSFMNKITRGNVDVQPYAFTTKSLFVGHCDYKY-LRWQVIDTPGILDHSLEERNtIEMQAiiaLAHL--TCSVLYFCDISEH----CGYTIEQQCSLFRSIKPLFANKQLILVVNKVDEQPWetldPEKKEMIEALAKDANCSLMTMSNKSEHGVSEVKASACE 338
                78***************************************9.899999******998766542555541115555..4456778899987....45556666666778889999************98751122455667777777779999************99887665 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0     6e-11   1.6e-08     115     183 ..     165     235 ..     127     247 .. 0.79
   2 !   11.1   0.1   0.00014      0.04      41     108 ..     274     347 ..     268     363 .. 0.80
   3 ?   -2.9   0.1       2.8   7.6e+02     221     253 ..     500     535 ..     482     543 .. 0.56

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 6e-11
  TIGR03596 115 kkkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklsk...eleLlDtPGilwpkledeev 183
                 +++  +l++G+PNvGKS+++N++++ + ++v   +  Tks    +++    + +++DtPGil + le++++
  MMETSP1061-20121228|956_1 165 DPNTRTILMCGLPNVGKSSFMNKITRGN-VDVQPYAFTTKSLFVGHCDYkylRWQVIDTPGILDHSLEERNT 235
                4555667899************987665.69**********99988876223569**********9998764 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00014
  TIGR03596  41 eleelvknkprlivlnkaD.....ladpektkkwlkyfeekgkkalavnakkkkkvkkil.kaikkllkekkek 108
                +++ l++nk+ ++v+nk D       dpek++ +++  ++ + + +++++k++++v++++ +a++kll+++ ++
  MMETSP1061-20121228|956_1 274 SIKPLFANKQLILVVNKVDeqpweTLDPEKKEMIEALAKDANCSLMTMSNKSEHGVSEVKaSACEKLLASRVDA 347
                688999************95554457899998888888899*****************9725788888887765 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 2.8
  TIGR03596 221 erykleeeee...eeeelleeiakkrglllkggeld 253
                +r++ e e++   eee+ +++i +++++++k ++++
  MMETSP1061-20121228|956_1 500 QRMGEEPESDldsEEEAAVDAIRDRKKIMRKMSQVN 535
                333333332233356667777777777777777666 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   6.5e-14   1.8e-11       3     142 ..     168     313 ..     166     332 .. 0.87

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 6.5e-14
  TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakk........kgvpiilvvnKiDlkd..dlktkvkslfaklnae 142
                ++ i++ G ++vGKs+ +n++++ + + ++ ++++t+++    + ++    + +++DT+G  d   +++  + e ++++  + ++  vl + ++ e   ++i++++          +++ +ilvvnK+D +   +l+++ k+ +++l++ 
  MMETSP1061-20121228|956_1 168 TRTILMCGLPNVGKSSFMNKITRGN-VDVQPYAFTTKSLFVGHCDYKY--LRWQVIDTPGILDH-SLEERNTIEMQAIIALAHLTCSVLYFCDISEHCGYTIEQQCSLfrsikplfANKQLILVVNKVDEQPweTLDPEKKEMIEALAKD 313
                6789*********************.999999****************..99********9998.899999999999****************9999999999998743333334489*************9*99999999999888765 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.3e-07   0.00012     155     218 ..     168     228 ..     147     243 .. 0.76
   2 !   11.8   0.0   7.6e-05     0.021      79     148 ..     269     335 ..     232     353 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 4.3e-07
  TIGR03597 155 kkdvyvvGvtNVGKSsliNkllklnkgkkk..vittSkfpgTTldlieipldkesvllDtpGiine 218
                 + +++ G  NVGKSs++Nk+ + n + +     t S f g   d    +     +++DtpGi+++
  MMETSP1061-20121228|956_1 168 TRTILMCGLPNVGKSSFMNKITRGNVDVQPyaFTTKSLFVG-HCDYKYLR----WQVIDTPGILDH 228
                5678999***************9998877653344455555.34555544....489******986 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 7.6e-05
  TIGR03597  79 gslikelkrfvkenkvllvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellel 148
                 sl +++k +  +++++lvvNK+d  p ++   + ke ++  ak+ + +    + +s k+++g++e+ + 
  MMETSP1061-20121228|956_1 269 CSLFRSIKPLFANKQLILVVNKVDEQPWETLDPEKKEMIEALAKDANCS---LMTMSNKSEHGVSEVKAS 335
                588999*************************************999988...899999999999998764 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   7.2e-10     2e-07       5     163 ..     173     340 ..     169     346 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 7.2e-10
  TIGR00436   5 ilGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkhklnellvkeirkalsevdl.ilfvvdsdeknke....dellleklqkl..kapvvlalnkldnkekdkllelidkeasllefk...eiveisalkgenveelkaiveakl 163
                + G pnvGKS ++Nk++  ++  v p a TT+   +g    +  +   iDtPG+  +  +  + +  ++  al  +   +l+  d++e+ +     +  l   +++l  +++ +l++nk+d++  + l ++ +++   l      + + +s +  + v+e+ka   +kl
  MMETSP1061-20121228|956_1 173 MCGLPNVGKSSFMNKITRGNVD-VQPYAFTTKSLFVGHCDYKYLRWQVIDTPGILDHSLEERNTIEMQAIIALAHLTCsVLYFCDISEHCGYtieqQCSLFRSIKPLfaNKQLILVVNKVDEQPWETLDPEKKEMIEALAKDancSLMTMSNKSEHGVSEVKASACEKL 340
                67**************999887.689************999999999*******9997777777777777777777644999999999876543123457788887622456678899999997666655555444333222235777888888888888777666655 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.1e-09   2.9e-07       1      56 [.     175     232 ..     175     347 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.1e-09
  TIGR00437   1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkgedieivDlPGi..YsLtt 56 
                G pNvGKs+++n++t  n+ v  ++ +T   + g+  +k  + +++D+PGi  +sL++
  MMETSP1061-20121228|956_1 175 GLPNVGKSSFMNKITRGNVDVQPYAFTTKSLFVGHCDYKYLRWQVIDTPGIldHSLEE 232
                77************************************************94445544 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.4e-09   6.4e-07     184     344 ..     139     309 ..      95     362 .. 0.69

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.4e-09
  TIGR00450 184 qklkkiiaelkdllnsrkklekl...k.dglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadl...vlyvlDaskpl....tkddeliitlkk..kkkdlllvlNKiDLaeleilkselkltvsl 344
                  lk+++a+l  l ++rk+l +l   + +   + + G +NvGKSS +N + + +   V  +  tt+ +  ++ + +    +++Dt Gi ++    E+  ie     i  a l   vly  D+s+      +++ +l+   k   ++k+l+lv+NK D +  e+l +e+k  +  
  MMETSP1061-20121228|956_1 139 TVLKRQKASLAYLEEVRKHLSRLpalDpNTRTILMCGLPNVGKSSFMNKITRGNV-DVQPYAFTTKSLFVGHCDYKYLRWQVIDTPGILDHSL-EERNTIEMQ-AIIALAHLtcsVLYFCDISEHCgytiEQQCSLFRSIKPlfANKQLILVVNKVDEQPWETLDPEKKEMIEA 309
                556777777777766654455542212256679999*************988765.5899****************************99864.477777753.333334433339******986422113444777777744489***********99666666644433322 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   4.9e-08   1.3e-05      17     183 ..     167     334 ..     155     336 .. 0.75
   2 ?   -3.7   0.3       6.3   1.7e+03     121     159 ..     609     645 ..     598     668 .. 0.50

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4.9e-08
  TIGR03598  17 klpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevne...elrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDirhelk...elDlellellkea..kipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelka 183
                ++  i + G  NvGKSs++N++t+ +  + +      T+++ + +++    ++ ++D PG      +++++ ++q++i       +    v+  +Di  ++    e+  +l++ +k    + ++++v++K+D    ++l+ ++k++ ++l+k++ +++++++S+++++g++e+ka
  MMETSP1061-20121228|956_1 167 NTRTILMCGLPNVGKSSFMNKITRGN--VDVQPYAFTTKSLFVGHCDYkylRWQVIDTPGILDHSLEERNTIEMQAII----ALAHLTCSVLYFCDISEHCGytiEQQCSLFRSIKPLfaNKQLILVVNKVDEQPWETLDPEKKEMIEALAKDA-NCSLMTMSNKSEHGVSEVKA 334
                45678999***************988..45555555677776666644235789******865555555555555555....55555667889999987754111445555666665344889999*************************995.57***************986 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 6.3
  TIGR03598 121 llellkeakipvlvvltKaDklkkselkkalkkvkkelk 159
                  + +++a+++ + v  K  k +kse++++ ++v++  +
  MMETSP1061-20121228|956_1 609 SDDEMEDATMSKTQV--KKKKRSKSEAARREASVTRGHS 645
                444444444443333..3335555555555555555444 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.1e-07   5.8e-05       8     168 ..     169     341 ..     164     357 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.1e-07
  TIGR03918   8 lhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRve.ktrevlektdl.allvvdaeaele...eleeelleelke..kkipvivvlnkidlkeeeke.......keklekkkeeevvlvsakekegieelkealiellp 168
                 +i + G  N+GKSs++N++t+ +v +   ++ tT      + + + l    +iDT+G+ D++   +  +e ++  +l++  + +l+ +d +++     e++ +l++++k    +  +i+v+nk+d +  e+         e+l k ++ +++++s+k+++g++e+k++  e+l 
  MMETSP1061-20121228|956_1 169 RTILMCGLPNVGKSSFMNKITRGNVDV-QPYAFTTKSLFVGHCDYKYL-RWQVIDTPGILDHSLEERNTIEmQAIIALAHLTCsVLYFCDISEHCGytiEQQCSLFRSIKPlfANKQLILVVNKVDEQPWETLdpekkemIEALAKDANCSLMTMSNKSEHGVSEVKASACEKLL 341
                578999******************995.67888888888888888777.67889*******874444444313333444444414455555544431013334455555533357899********8754332222222466677788899999************998777664 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.2e-05    0.0061       8      37 ..     174     202 ..     170     211 .. 0.91
   2 ?    2.3   0.0     0.059        16     196     263 ..     278     344 ..     241     361 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.2e-05
  TIGR00092   8 vGLpnvGkstlfqaitkaklgeaanyPfat 37 
                 GLpnvGks + + it+ ++ ++  y f+t
  MMETSP1061-20121228|956_1 174 CGLPNVGKSSFMNKITRGNV-DVQPYAFTT 202
                6*******************.999999998 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.059
  TIGR00092 196 lLtakPilivan.vseddlvnkenkllekvkeivaefkegdkvvlvsaeleselselkeeereeflkel 263
                l   k  ++v+n v e+ ++  + ++ ++++e++a+   +  ++++s + e+ +se+k+++ e+ l+++
  MMETSP1061-20121228|956_1 278 LFANKQLILVVNkVDEQPWETLD-PEKKEMIEALAK-DANCSLMTMSNKSEHGVSEVKASACEKLLASR 344
                44555555555438999999975.555666666663.5556788999**********999988877665 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.4e-06   0.00065     180     344 ..     159     333 ..     132     340 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.4e-06
  TIGR03156 180 qrkkrkksevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeeevlltDTVGFirk.LPheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelg..aeeipvllvlNkidkleeeeleeleekkee.........avlvsAkkgegleeLl 344
                +r    + ++ t+ + G  N GKs+++n++t+ +v ++   F+T    + +++++   +  + DT G + + L ++     +a +  ++ +  +l   D+s++    +ie+  +++++++   ++++ +lv+Nk+d+ + e+l+ +++++ e          +++s k+++g++e++
  MMETSP1061-20121228|956_1 159 SRLPALDPNTRTILMCGLPNVGKSSFMNKITRGNVDVQPYAFTTKSLFVGHCDYKYL-RWQVIDTPGILDHsLEERNTIEMQAIIALAHLTCSVLYFCDISEHCG-YTIEQQCSLFRSIKplFANKQLILVVNKVDEQPWETLDPEKKEMIEalakdancsLMTMSNKSEHGVSEVK 333
                44555567788999***************************************9887.67788****9864377777777888888888888899999**98754.4566666677777633567799*********9955555554444321111122225566666666666665 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   8.1e-05     0.022     122     229 ..     168     275 ..     152     282 .. 0.73
   2 ?    1.1   0.0      0.18        49      71     119 ..     283     335 ..     278     343 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.1e-05
  TIGR00157 122 krisvfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhlqgGliiDtPGfneldlenleeeqlaqlfvefrells...eCkfk.dClHqsepdCavkeav 229
                 r+ ++ G   VGKSS +N+++   +  v+         k   +    ++     +iDtPG+ + +le+ ++ +++     ++ + s   +C  +  C  + e++C++ +++
  MMETSP1061-20121228|956_1 168 TRTILMCGLPNVGKSSFMNKITRG-NVDVQ---PYAFTTKSLFVGHCDYKYLRWQVIDTPGILDHSLEERNTIEMQAIIALAHLTCSvlyFCDISeHCGYTIEQQCSLFRSI 275
                467789999***********9754.33333...4444445555555667777889************988877766666665555554448887625999999999987765 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.18
  TIGR00157  71 epiivlnkkdlleeedae...keqleel.knlgYkvllvsvkneegleelkek 119
                + i+v+nk+d+   e  +   ke++e l k+ + +++ +s+k+e+g++e+k+ 
  MMETSP1061-20121228|956_1 283 QLILVVNKVDEQPWETLDpekKEMIEALaKDANCSLMTMSNKSEHGVSEVKAS 335
                56899999999877666544466666663578999999**********99875 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.8e-05     0.027      24     126 ..     154     256 ..     141     272 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.8e-05
  TIGR00991  24 llellgklkeedvssltilvmgkggvgksstvnsiigervaavsafqseglrpvlvsrt.ragftlniidtpglieggyindqavniikrfll.dktidvllyvd 126
                + + l +l   d ++ til+ g   vgkss +n i   + + v ++     + ++v  +    +  ++idtpg+++    + +++++   + l + t  vl + d
  MMETSP1061-20121228|956_1 154 VRKHLSRLPALDPNTRTILMCGLPNVGKSSFMNKITRGN-VDVQPYAFTT-KSLFVGHCdYKYLRWQVIDTPGILDHSLEERNTIEMQAIIALaHLTCSVLYFCD 256
                5556778888899*********************98655.4667765544.4455555505566789*******9998887778877665544145667766665 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   5.9     0.023       6.4     286     396 ..     508     635 ..     305     691 .. 0.48

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.023
  TIGR00934 286 laaesdees.sesrriqekikrrlstssiekns.........................qqnltrlaktksfdd.skavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryak 396
                ++ +s+ee+  ++ r ++ki r++s+ ++++n+                         +      + +++  d  k v+  rs  ++r ++++ ++  + +d+++  ++++++a+++k ++kk+++      ks++a+
  MMETSP1061-20121228|956_1 508 SDLDSEEEAaVDAIRDRKKIMRKMSQVNRSENKpviprtargrakdmhqpgdrnedviK-----AKMDRLGVDaTKMVERGRSLDRERGRKRERSSRRNVRDEDNQSDDEMEDATMSKTQVKKKKRS-----KSEAAR 635
                22222222113333334444444444444444455555555555555555555333331.....222222221122111111111222222222222222222233333333333333222222221.....111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.18s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 2170.15
//
Query:       MMETSP1061-20121228|972_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.8   0.8       0.03   11.1   0.6    1.3  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   7.3e-06      0.03     153     262 ..     252     362 ..     241     368 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 7.3e-06
  TIGR01843 153 kqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleq.kfreevseelreaqarlaeleeels 262
                +++ +el + + + +++ ++l++ +e +++ ++  ++++v   e Le e + ++lq+e++el  +l++   + ++lee+ +++ +   ++ ++++l++a+++  e +eel+
  MMETSP1061-20121228|972_1 252 REKLDELLEDDLEFKGFVHRLKFFDEIFTIGSSRLDDNVVLAKENLEHETKWKDLQAEVKELHNTLKSKLDDFSKLEEQQNTICApPDTKSTMKKLQKAKKEAFEESEELA 362
                55556677777788899999**********999999****************************************99988876625678899999999999888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1477.54
//
Query:       MMETSP1061-20121228|971_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-136  453.3   0.0   2.1e-136  453.1   0.0    1.0  1  TIGR00032 argG: argininosuccinate synthase
     0.0056   14.1   0.0     0.0086   13.5   0.0    1.3  1  TIGR00268 TIGR00268: TIGR00268 family protein


Domain annotation for each model (and alignments):
>> TIGR00032  argG: argininosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  453.1   0.0    1e-139  2.1e-136       1     390 [.       7     410 ..       7     414 .. 0.97

  Alignments for each domain:
  == domain 1    score: 453.1 bits;  conditional E-value: 1e-139
  TIGR00032   1 kvvlaysGGlDtsvalklleekgaeviavtvdvGqpeedldaieekalklGaekayviDareefvkdylfaaiqanavyegkYllstaLaRpliakklvevakkegaeavahGctgKGnDqvRFelsilllnpdlkviaPvreleli.....ReeeieyaaekGievpvekekaysiDenllgrsiEageLEdpsteppediyelvkdpiektedepevveieFekGvPvaln.....geslepvelilkaneiagkhGvGriDivEdRiiglKsReiYEapalllLikAhkdLetlvltkdvlefkeiveekyseliYkGlwfdplaealdalikktqervtGtvrvklfkGnaivigrkseyslYdeelvsfek...dkefd..qkdaiGfikirglqikvyr 390
                k+vlaysGGlDtsv+lk+l ekg++via++++vGq eed+ a+e kal++Ga k ++ D r+efv+dy+f  i+ na+yeg+Yll+t++aRp iak ++ +a  ega+ +ahG+tgKGnDqvRFe+  ++l p +k++aP+r+ e+i     R+++++y +++ i+v ++ +++ysiDenl++ s+E+g LEd    p e +++++++p++++ +++e+v ieF kGvPv+++       + +p++++l  n iagkhG+GriDivE+R +g+KsR++YE+p+ +lL+ Ah dLe   ++++v +  e +++++++l Y+G+wf p++e ++  ++  q+ v G+v ++l+kGn ++ gr+s+++lY+++l+s++     ++fd  + da+Gfi+i++++ k+y+
  MMETSP1061-20121228|971_1   7 KLVLAYSGGLDTSVILKWLCEKGFDVIAFCANVGQFEEDFSAVEAKALAVGASKCVITDLRKEFVTDYVFDCIKSNAIYEGRYLLGTSIARPCIAKEMIRIATAEGAQYIAHGATGKGNDQVRFEMCAQALSPTIKCVAPWRDAEFIesfkgRKDLLAYCEKHSIPVDAKPKSNYSIDENLFHTSYESGCLEDAACGPEESMFKMTVSPQAAP-ETSETVVIEFVKGVPVKITnksdgTTKTDPLDIFLYCNTIAGKHGIGRIDIVENRFVGIKSRGVYETPGGTLLRAAHMDLEGICMDREVKRITEGMSNEFARLCYNGFWFAPEMELIRNSLDFAQRDVIGEVEIELYKGNCTIKGRSSPKALYNADLASMDIeggGDAFDynPADAQGFIRINAVRLKTYA 410
                789************************************************************************************************************************************************************************************************************999988.999***************97776445677************************************************************************************************************************************85554666533789***********99986 PP

>> TIGR00268  TIGR00268: TIGR00268 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.2e-06    0.0086      14      64 ..       7      56 ..       1      81 [. 0.73

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.2e-06
  TIGR00268 14 kvliaysGGvdssllaavlsdaglevlaitvvspslspreledakkiakei 64
               k+++aysGG+d+s++ + l + g +v+a  +   +  ++++   +++a  +
  MMETSP1061-20121228|971_1  7 KLVLAYSGGLDTSVILKWLCEKGFDVIAFCANVGQF-EEDFSAVEAKALAV 56
               899********99999988888******99888554.44444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|973_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2170.99
//
Query:       MMETSP1061-20121228|976_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 780.46
//
Query:       MMETSP1061-20121228|980_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|982_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 481.76
//
Query:       MMETSP1061-20121228|975_1  [L=819]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.3e-135  447.6   6.3   1.2e-120  401.2   0.3    2.3  3  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    2.5e-48  163.0   1.7    1.7e-15   54.7   0.0    4.2  4  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    9.3e-06   21.9   0.1      0.016   11.3   0.0    2.6  3  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    1.5e-05   21.3   0.0      0.053    9.6   0.0    2.1  2  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
     0.0034   13.5   0.0     0.0061   12.7   0.0    1.3  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
     0.0047   13.8   0.0     0.0078   13.1   0.0    1.2  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0062   13.0   0.0     0.0097   12.4   0.0    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
     0.0069   12.8   0.0      0.011   12.2   0.0    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0073   13.7   0.0      0.013   12.8   0.0    1.3  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
  ------ inclusion threshold ------
      0.012   12.8   0.0      0.021   12.0   0.0    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      0.018   11.9   0.0      0.038   10.9   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      0.024   12.0   0.0      0.043   11.2   0.0    1.3  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.029   11.4   0.0      0.051   10.6   0.0    1.3  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
      0.034   11.4   0.0       0.06   10.6   0.0    1.3  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         4   1.2e+03     241     260 ..     237     259 ..     230     261 .. 0.68
   2 !   49.7   0.1   2.1e-16     6e-14      55     110 ..     353     408 ..     331     417 .. 0.83
   3 !  401.2   0.3    4e-123  1.2e-120     109     413 ..     471     778 ..     454     779 .. 0.96

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 4
  TIGR00382 241 iqidtsnilfi...cgGafaGle 260
                 + dt++  f    c+G+f+G+ 
  MMETSP1061-20121228|975_1 237 FKCDTEENTFYcasCAGRFVGIR 259
                567777777752226799*9986 PP

  == domain 2    score: 49.7 bits;  conditional E-value: 2.1e-16
  TIGR00382  55 keveeeleleelpkpkelkevldeyviGqeqakkvlsvavynhykrlrleknkksd 110
                ++v++  + +++p+p+e+++ ldeyviGq + k +lsv vynhykr+++ + k  +
  MMETSP1061-20121228|975_1 353 NHVQTPPSVKRIPTPREIRKGLDEYVIGQSNVKVALSVGVYNHYKRISVVEAKAAN 408
                55556667899*************************************85454444 PP

  == domain 3    score: 401.2 bits;  conditional E-value: 4e-123
  TIGR00382 109 sddgveleksnilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksenasitrdvsGeGvqqallklieGtvanvppkGGrkhpeqeliqidtsnilficgGafaGlekiikkrlekksiGfsaekkkkkkee...aellkkvepedlvkfGlipefiGrlpvlatlekldeealvailtkpknalvkqyqkllkldevelefeeealkaiakkalerktGarglrsiveellldvmfelpsledlekvvitkevvlkqeepkl 413
                + ++ e++ksn++++GptGsGkt l +tla+ +dvp+ iadat+lt+aGyvGedve +l kl  ++  d+e+++kGiiyide dki +   n+si+rdvsGeGvq allk++eG v+nvp + Grk p+++++qidt+nilficgGafaGle+i+++r++  siGf+ae kkk ++    +  + +v p+dlv+fG+ipef+Gr+pv+ + + ld ++lv+ilt pkn+++kqy++l+ +d+v+++ ++  l++iak a++r tGarglrsi +++l+++ + +psl+d++ v ++ ++v  + +p l
  MMETSP1061-20121228|975_1 471 QVEECEIDKSNLMVLGPTGSGKTHLIKTLARLMDVPLVIADATCLTQAGYVGEDVESVLFKLYLESGQDIERCQKGIIYIDETDKIRKSGGNVSISRDVSGEGVQHALLKIVEGNVVNVPKEPGRKNPRGDFLQIDTTNILFICGGAFAGLERIVNHRTNAASIGFGAEMKKKIEDPkvqGRCFDNVIPKDLVEFGMIPEFVGRFPVIVSTKGLDLDNLVDILTVPKNSIIKQYKRLFAIDDVKFHVTDCGLEEIAKTAFARGTGARGLRSITDQVLMETQYVVPSLSDVHTVYVDAAAVRGERKPIL 778
                34459********************************************************************************************************************************************************************99998775566899*********************************************************************************************************************99998876 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   9.5e-08   2.8e-05       2      38 ..     366     402 ..     365     410 .. 0.92
   2 !   41.2   0.0   7.4e-14   2.2e-11      44     100 ..     476     532 ..     468     542 .. 0.91
   3 !   42.2   0.1   3.6e-14   1.1e-11     247     308 ..     544     618 ..     533     622 .. 0.80
   4 !   54.7   0.0   5.8e-18   1.7e-15     316     423 ..     667     770 ..     654     781 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 9.5e-08
  TIGR00390   2 tPreivaeldkyiiGqdeakkavaialrnryrrlqle 38 
                tPrei + ld+y+iGq++ k a+++ + n y+r+ + 
  MMETSP1061-20121228|975_1 366 TPREIRKGLDEYVIGQSNVKVALSVGVYNHYKRISVV 402
                8********************************8764 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 7.4e-14
  TIGR00390  44 evvPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdl 100
                e+   n++++G+tG Gkt + + la+l+++P++  +at  t+ GyvG dves++  l
  MMETSP1061-20121228|975_1 476 EIDKSNLMVLGPTGSGKTHLIKTLARLMDVPLVIADATCLTQAGYVGEDVESVLFKL 532
                6777899*********************************************98666 PP

  == domain 3    score: 42.2 bits;  conditional E-value: 3.6e-14
  TIGR00390 247 esGiifideidkiakkg..essgadvsreGvqrdllPiveGstvst......k.....yGsvktdhilfiaaGaf 308
                ++Gii+ide dki k+g   s ++dvs eGvq  ll iveG +v+       k     +  ++t  ilfi  Gaf
  MMETSP1061-20121228|975_1 544 QKGIIYIDETDKIRKSGgnVSISRDVSGEGVQHALLKIVEGNVVNVpkepgrKnprgdFLQIDTTNILFICGGAF 618
                79**************97445589********************964333321222225589************9 PP

  == domain 4    score: 54.7 bits;  conditional E-value: 5.8e-18
  TIGR00390 316 liPelqGrlPirvelkaltvddleriltetkaslikqykallkvegvelefsdeaikkiaelaynvnekteniGarrlhtvlerlledlsfeaedls.lqkvtidadyv 423
                +iPe+ Gr+P+ v  k l  d+l+ ilt +k+s+ikqyk l+++++v+++ +d ++++ia+ a+         Gar l ++ +++l +  + ++ ls +++v +da+ v
  MMETSP1061-20121228|975_1 667 MIPEFVGRFPVIVSTKGLDLDNLVDILTVPKNSIIKQYKRLFAIDDVKFHVTDCGLEEIAKTAFAR-----GTGARGLRSITDQVLMETQYVVPSLSdVHTVYVDAAAV 770
                79**************************************************************64.....67******************999875256777777666 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   5.4e-05     0.016     488     519 ..     480     511 ..     471     518 .. 0.88
   2 ?   -2.4   0.0      0.72   2.1e+02     272     293 ..     539     560 ..     536     570 .. 0.79
   3 !    7.6   0.0   0.00067       0.2     631     711 ..     663     747 ..     638     753 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.4e-05
  TIGR02639 488 gsflfvGptGvGktelakqLaeelgvellrfD 519
                ++++  GptG Gkt l k+La+ + v l+  D
  MMETSP1061-20121228|975_1 480 SNLMVLGPTGSGKTHLIKTLARLMDVPLVIAD 511
                578899********************998666 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.72
  TIGR02639 272 eiekeedailfiDeihtivgag 293
                +ie++++ i++iDe   i  +g
  MMETSP1061-20121228|975_1 539 DIERCQKGIIYIDETDKIRKSG 560
                799***********98886655 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.00067
  TIGR02639 631 ikklfsPefrnrldaiikfedlseevlekivk...k.eleelekkLaekkveleleddaikylaekgydeefGarelkrvieeei 711
                ++  + Pef  r+  i++ + l+ ++l+ i+       +++ ++ +a  +v+++++d  ++ +a+ ++ +  Gar l+ + ++ +
  MMETSP1061-20121228|975_1 663 VEFGMIPEFVGRFPVIVSTKGLDLDNLVDILTvpkNsIIKQYKRLFAIDDVKFHVTDCGLEEIAKTAFARGTGARGLRSITDQVL 747
                555678*******************9998875221213555566667789**************************988877655 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0002     0.058     596     619 ..     480     503 ..     469     506 .. 0.87
   2 !    9.6   0.0   0.00018     0.053     742     822 ..     663     747 ..     634     769 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0002
  TIGR03346 596 gsflflGptGvGktelakalaefl 619
                + ++ lGptG Gkt+l k+la+ +
  MMETSP1061-20121228|975_1 480 SNLMVLGPTGSGKTHLIKTLARLM 503
                56899****************865 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00018
  TIGR03346 742 lraefrPeflnrideivvfkalekeeikeiveiq....lerlrkrlaerklelelsdaaldllaeagydPvyGarPlkraiqkel 822
                ++  + Pef+ r   iv  k l+ +++ +i ++     +++ ++ +a  +++++++d  l+ +a++++    Gar l+ + ++ l
  MMETSP1061-20121228|975_1 663 VEFGMIPEFVGRFPVIVSTKGLDLDNLVDILTVPknsiIKQYKRLFAIDDVKFHVTDCGLEEIAKTAFARGTGARGLRSITDQVL 747
                556678************************99962222555666778899***************************87766655 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.1e-05    0.0061     215     284 ..     482     557 ..     472     582 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.1e-05
  TIGR01243 215 vllygppgtgktllakavaneagayfiaingpei.mskyyges.eerlreifkea....eenapsiifideidaia 284
                ++++gp g+gkt l k++a  ++  ++  +   +  + y+ge  e  l +++ e+    e     ii+ide d i 
  MMETSP1061-20121228|975_1 482 LMVLGPTGSGKTHLIKTLARLMDVPLVIADATCLtQAGYVGEDvESVLFKLYLESgqdiERCQKGIIYIDETDKIR 557
                5678****************999987766665541567***963667899997752222666789********986 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.7e-05    0.0078     116     166 ..     452     501 ..     434     507 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.7e-05
  TIGR02788 116 elsdadeellellkagdikeFlklaiaakkniiisGgtgsgKTTflkalvk 166
                +++ +  ++ ++ + +d+++ ++ +   k n+++ G tgsgKT ++k+l +
  MMETSP1061-20121228|975_1 452 SAHTTTLDMNSIAD-EDFATQVEECEIDKSNLMVLGPTGSGKTHLIKTLAR 501
                44444455555555.5899999*************************9876 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.3e-05    0.0097     363     386 ..     481     504 ..     456     516 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.3e-05
  TIGR02868 363 rvavvGasGaGKstLlallaglld 386
                ++ v+G++G+GK+ L+++la+l+d
  MMETSP1061-20121228|975_1 481 NLMVLGPTGSGKTHLIKTLARLMD 504
                578*******************98 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.6e-05     0.011     186     235 ..     455     503 ..     383     513 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.6e-05
  TIGR00368 186 altldlkdvkGqqrakraleiaaaGghnllllGPPGsGktllakrlqgll 235
                ++tld++ +   + a +  e +   + nl++lGP GsGkt l+k l  l+
  MMETSP1061-20121228|975_1 455 TTTLDMNSIADEDFATQV-EECEIDKSNLMVLGPTGSGKTHLIKTLARLM 503
                457788887777777654.44455689*****************998765 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.5e-05     0.013      25      69 ..     483     526 ..     476     533 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.5e-05
  TIGR02640  25 hlrGPaGtGktslalhvakkrdrPvvllnGdaelktsdlvGeeag 69 
                 + GP+G+Gkt l   +a+ +d P+v+      l+++  vGe  +
  MMETSP1061-20121228|975_1 483 MVLGPTGSGKTHLIKTLARLMDVPLVIA-DATCLTQAGYVGEDVE 526
                578*********************8865.4566888888887665 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   7.1e-05     0.021      23      53 ..     476     505 ..     457     529 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.1e-05
  TIGR00972  23 eikknkvtaliGpsGcGkstllrslnrlndl 53 
                ei k ++  ++Gp+G+Gk+ l+++l rl d+
  MMETSP1061-20121228|975_1 476 EIDKSNL-MVLGPTGSGKTHLIKTLARLMDV 505
                5555554.468*****************995 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00013     0.038      32      70 ..     481     519 ..     469     560 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00013
  TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpalekpg 70 
                 +++ GP G Gkt l k +a+ ++v l i+ +  l+++g
  MMETSP1061-20121228|975_1 481 NLMVLGPTGSGKTHLIKTLARLMDVPLVIADATCLTQAG 519
                57899****************************999875 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015     0.043      35      61 ..     476     502 ..     457     522 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00015
  TIGR03420  35 akaerllylwGesgsGksHLLqAacaa 61 
                + +++ l + G++gsGk+HL++ +++ 
  MMETSP1061-20121228|975_1 476 EIDKSNLMVLGPTGSGKTHLIKTLARL 502
                445678999************998775 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00017     0.051     157     200 ..     458     501 ..     448     514 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00017
  TIGR03819 157 lvaagaiapevaelleaivaarlallvsGgtGsGkttLLsalLa 200
                l  +   +++ a+ +e+    + +l+v G tGsGkt L+ +l  
  MMETSP1061-20121228|975_1 458 LDMNSIADEDFATQVEECEIDKSNLMVLGPTGSGKTHLIKTLAR 501
                556667778888889999999******************99854 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0002      0.06      24      53 ..     476     504 ..     462     523 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0002
  TIGR02315  24 eikkGelvaviGlsGaGkstllrsinrlve 53 
                ei+k +l  v+G+ G+Gk+ l++++ rl++
  MMETSP1061-20121228|975_1 476 EIDKSNL-MVLGPTGSGKTHLIKTLARLMD 504
                5666665.589*****************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      202  (0.0492443); expected 82.0 (0.02)
Passed Vit filter:                        86  (0.0209654); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.65u 0.18s 00:00:00.83 Elapsed: 00:00:00.92
# Mc/sec: 1174.99
//
Query:       MMETSP1061-20121228|981_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 1607.33
//
Query:       MMETSP1061-20121228|983_1  [L=1680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-08   30.3   0.0    1.2e-07   29.1   0.0    1.5  1  TIGR00417 speE: spermidine synthase


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.9e-11   1.2e-07      55     196 ..     730     879 ..     712     911 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.9e-11
  TIGR00417  55 efiyheliahvp..llahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpklsgalddervdlkidDGvkflrdt.....ekkfDviivDstdPv..GpaetlfekefyelvkkalnedGvivaqseslllqleli 196
                 +  he + h p  +l  +  k+vl +GGGD   l e+++++s e i  +e+D+ v++ s ++   ++ +++derv+    D  k l          +fD +++D    +  G   +  +++  + ++k l+++G++v q + +  +   +
  MMETSP1061-20121228|983_1 730 RPHVHETLIHYPasFLPKGGLKRVLYVGGGDLVLLHELLRYESAELIIGMELDQMVLRGSFRHY-GIQPKFEDERVHWWFGDAAKSLSLLppedfFGTFDLVLIDLVVEIfdGLRVGDQNERLVDYMAKLLKPEGILVRQEDYPHHNVVDF 879
                556788888887334566778*************************************997765.4679****************9975444333889*****99876652366666678999*****************99887765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.71u 0.21s 00:00:00.92 Elapsed: 00:00:00.72
# Mc/sec: 3079.75
//
Query:       MMETSP1061-20121228|985_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.21
# Mc/sec: 3350.01
//
Query:       MMETSP1061-20121228|988_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-24   83.8   0.0    3.4e-24   83.4   0.0    1.2  1  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein


Domain annotation for each model (and alignments):
>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   8.3e-28   3.4e-24      19     169 ..     107     261 ..      90     264 .] 0.90

  Alignments for each domain:
  == domain 1    score: 83.4 bits;  conditional E-value: 8.3e-28
  TIGR03665  19 vkkeieektkvkleidseegevkve..eeeedplkvlkarevvkAigrGfspekAlkLldddk.vLevidlkel.aksknelkrikgriIGeeGktrkiieeltgvkisvygktvsiiGeieqvkiareAiemlieGkkhstvykfLerkkrelk 169
                + + + e +k ++++++++ +v+++   ++ d  ++ k ++ v+A  +Gf++++A+ Ll+ d+ ++e  +++++   + ++l+r  gr+ G++Gktr  ie+ t ++i+v ++ + ++G++ ++++ar+Ai  li G++ ++vy+ + +  ++++
  MMETSP1061-20121228|988_1 107 ILTPLVEYLKLQVRFNTKTRSVEMKtsPHTLDVGALQKGADFVSAFMMGFEVQDAVALLRLDDlYVESFNVTDVkILRGDHLSRAVGRVAGQDGKTRFAIENATRTRIVVADQRIHMLGSYANLRVARNAICDLILGAPPGKVYNNMRNVAKRMN 261
                55667788899999999*****999877888999999*********************98555499*9****9977788******************************************************************9977766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1124.04
//
Query:       MMETSP1061-20121228|992_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.5   1.4     0.0014   15.5   1.0    1.4  2  TIGR00893 2A0114: D-galactonate transporter


Domain annotation for each model (and alignments):
>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.0   3.4e-07    0.0014     117     169 ..      29     100 ..      26     113 .. 0.88
   2 ?   -3.4   0.1      0.18   7.4e+02     123     148 ..     130     154 ..     128     156 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.4e-07
  TIGR00893 117 atavsifnsaqalgaiiggplvgwilvefs...................WqlvFiieGvlaiilgvlilkvi 169
                at +s++ +   ++ ++  +l+++++++f                    W+ v+++ Gv++ii+++li+ + 
  MMETSP1061-20121228|992_1  29 ATKTSRMPATLVVAHVFSFALSYVVIQSFWefedvsaalafyglyhrygWNQVVHFFGVPGIIWSILIFLIH 100
                6788999999999999999999999988889999999999999999999*******************9875 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.18
  TIGR00893 123 fnsaqalgaiiggplvgwilvefsWq 148
                ++s  +lga + +p+ +  + ++ W 
  MMETSP1061-20121228|992_1 130 YLSIDPLGATLYAPVLYA-MYASAWA 154
                778889999999999995.5555665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 1436.04
//
Query:       MMETSP1061-20121228|994_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.52
# Mc/sec: 228.44
//
Query:       MMETSP1061-20121228|1000_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.36
# Mc/sec: 652.61
//
Query:       MMETSP1061-20121228|1001_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.30
# Mc/sec: 347.57
//
Query:       MMETSP1061-20121228|1002_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-06   24.4   0.0      2e-06   24.3   0.0    1.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.9e-10     2e-06     188     232 ..       3      63 ..       1      64 [] 0.88

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 4.9e-10
   TIGR00483 188 saykgdnvvkkse..napwyk.............gktllealdkl.eapekpvdkplripi 232
                 s+++gdn+v+  +  +  wyk             g t+++ald++  +p+++ d  lr+p+
  MMETSP1061-20121228|1002_1   3 SGFHGDNLVEPVDagKCSWYKgwsanrtpkkvvtGMTIVDALDNFiTPPKRLPDAALRLPV 63 
                 89*******975533899*************************9627889999*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 291.29
//
Query:       MMETSP1061-20121228|1003_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-29   99.6   3.1      5e-21   73.3   0.2    2.4  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    8.3e-28   95.1   4.1    8.8e-23   78.7   0.2    2.2  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.3e-27   93.3   2.7    3.6e-22   76.8   0.2    2.2  2  TIGR02415 23BDH: acetoin reductases
    8.1e-23   79.0   3.6    5.4e-18   63.2   0.1    2.2  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    5.3e-19   66.5   2.2    4.3e-12   43.9   0.1    2.3  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.7e-17   61.7   3.4    2.6e-13   48.0   0.5    2.7  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    5.5e-17   59.2   4.7    3.4e-11   40.1   0.8    2.1  2  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    8.2e-16   55.9   9.6      5e-13   46.8   0.4    2.5  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    4.9e-13   46.6  10.6    1.1e-09   35.6   2.3    3.6  3  TIGR02685 pter_reduc_Leis: pteridine reductase
    4.5e-11   40.4   0.3    2.8e-06   24.8   0.0    2.3  2  TIGR01500 sepiapter_red: sepiapterin reductase
    2.1e-10   38.2  10.5    4.3e-06   24.1   2.2    3.2  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.4e-09   34.7   3.5    0.00057   17.0   0.4    2.9  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    1.9e-06   24.9   0.3    1.9e-06   24.9   0.2    1.6  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
     0.0026   14.8   1.9     0.0035   14.4   0.3    1.9  2  TIGR00507 aroE: shikimate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   3.3e-09   9.6e-07       1      39 [.     133     171 ..     133     204 .. 0.76
   2 !   73.3   0.2   1.7e-23     5e-21      23     184 ..     249     420 ..     227     424 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 3.3e-09
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeel 39 
                 +lvtG++rgiG+aia+  ++ega+vvit r+++e  e++
  MMETSP1061-20121228|1003_1 133 VLVTGGGRGIGRAIALICHDEGANVVITARTQSELEETI 171
                 69**************************88776643333 PP

  == domain 2    score: 73.3 bits;  conditional E-value: 1.7e-23
   TIGR01830  23 akvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrD..klllrmkeedwdevikvnLkgvfnvtkavlk.....kmikkrsGr....iinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietd 184
                   +++  +s +++a++++++ +e+ ++++  ++dv+de +v+++v++v++e g+id+++nnAG ++   + +  ++ ++ +  +k+n+ g   +t av k     km ++ + +    i+niss +g +G ++ + Y+asK  l glt  +akElasrn++v +++PG+++t+
  MMETSP1061-20121228|1003_1 249 DAIAVG-SSATSAAATATATASESAARMVYRVCDVTDESQVESAVQSVVAEEGDIDVVINNAGGAQSpkGPVGTLEGSQLEFLLKLNVLGPQLITSAVCKhapswKMDENDESSspkvILNISSKAGKVGLQNYSLYVASKFALEGLTSCWAKELASRNVRVHSLSPGMVNTQ 420
                 444555.3445556666777778889999*********************************987752267889999*************999998888722223466554332233389**************************************************996 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   1.2e-06   0.00036       2      47 ..     131     176 ..     130     204 .. 0.83
   2 !   78.7   0.2     3e-25   8.8e-23      27     186 ..     250     420 ..     231     449 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.2e-06
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakelee 47 
                 k +lvtG + Gig+aia     +Ga+vv++  ++ ++e++ + +++
  MMETSP1061-20121228|1003_1 131 KRVLVTGGGRGIGRAIALICHDEGANVVITARTQSELEETIRLAAA 176
                 789***************************9998888776655544 PP

  == domain 2    score: 78.7 bits;  conditional E-value: 3e-25
   TIGR01963  27 kvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAG.iqhva.pieefptekfekiiavnltsafhtiraalpi.....mkkqgwG....riiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtp 186
                 +++v +  + aa++a+++++e+++++++ + dvt+e+++++ ++ v+ae g++d+++nnAG  q  + p+   +  + e ++++n+ ++  ++ a+ ++     m +++      +i+ni+s  g v+    s Yva+K +l Glt   A+E A+ +++++++ Pg v+t+
  MMETSP1061-20121228|1003_1 250 AIAVGSSATSAAATATATASESAARMVYRVCDVTDESQVESAVQSVVAEEGDIDVVINNAGgAQSPKgPVGTLEGSQLEFLLKLNVLGPQLITSAVCKHapswkMDENDESsspkVILNISSKAGKVGLQNYSLYVASKFALEGLTSCWAKELASRNVRVHSLSPGMVNTQ 420
                 566666667788889999999***************************************736765449********************99999988754444477766544455899***************************************************97 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   2.9e-06   0.00084       3      43 ..     133     173 ..     131     200 .. 0.85
   2 !   76.8   0.2   1.2e-24   3.6e-22      27     186 ..     251     420 ..     235     438 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.9e-06
   TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketake 43 
                  lvtG+++GiG+aia    ++G +v+++   + ++ et++ 
  MMETSP1061-20121228|1003_1 133 VLVTGGGRGIGRAIALICHDEGANVVITARTQSELEETIRL 173
                 79*************************99998888888764 PP

  == domain 2    score: 76.8 bits;  conditional E-value: 1.2e-24
   TIGR02415  27 vavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalv..tpileiteeeleklynvnvkgvlfGiqaaae.....kfkklkhk..Gk.iinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivkte 186
                 +av      +a+ ++ + +e+  + v+ + dv+d s+ve+av++ v++ G++dv++nnaG a++   p+ +++  +le l ++nv g      a  +     k++++++    k i+n +s ag++g ++ s+y ++kfa+ glt   akeLa++ + v + +PG+v+t+
  MMETSP1061-20121228|1003_1 251 IAVGSSATSAAATATATASESAARMVYRVCDVTDESQVESAVQSVVAEEGDIDVVINNAGGAQSpkGPVGTLEGSQLEFLLKLNVLGPQLITSAVCKhapswKMDENDESssPKvILNISSKAGKVGLQNYSLYVASKFALEGLTSCWAKELASRNVRVHSLSPGMVNTQ 420
                 555555556666666777788888899999******************************98753279******************9766544433311111555544432345377***************************************************97 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.6   3.3e-06   0.00096       1      48 [.     128     176 ..     128     206 .. 0.79
   2 !   63.2   0.1   1.8e-20   5.4e-18      44     204 ..     253     422 ..     235     485 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.3e-06
   TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaid.lceplsdvvtypaa 48 
                 l+Gk  l+tG  rG Gra a+   +eGa+++      ++l+++++ +aa
  MMETSP1061-20121228|1003_1 128 LKGKRVLVTGGGRGIGRAIALICHDEGANVVITArTQSELEETIRLAAA 176
                 789**************************97654144566677666655 PP

  == domain 2    score: 63.2 bits;  conditional E-value: 1.8e-20
   TIGR03971  44 typaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvls..ygrafelseeqWdtvldvnlkGvWktvkavvPa.....lierknGGs...iiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtami 204
                   ++at +    ta++ e++ r ++ r++dv +  +++++v++ v+e G +dvv++naG ++   g++  l+  q + +l +n+ G      av  +     + e+++  s   i+ +ss ag ++l++ + y a+k+ l glt   a+ela  ++rv s++P  v+t+  
  MMETSP1061-20121228|1003_1 253 VGSSATSAAATATATASESAAR-MVYRVCDVTDESQVESAVQSVVAEEGDIDVVINNAGGAQspKGPVGTLEGSQLEFLLKLNVLGPQLITSAVCKHapswkMDENDESSSpkvILNISSKAGKVGLQNYSLYVASKFALEGLTSCWAKELASRNVRVHSLSPGMVNTQSF 422
                 4467888888888888888776.6689*******************************98862358999*****************8877777664422233777666543443889**************************************************9865 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   6.4e-08   1.9e-05       3      50 ..     128     176 ..     126     204 .. 0.79
   2 !   43.9   0.1   1.5e-14   4.3e-12      33     189 ..     255     420 ..     233     435 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 6.4e-08
   TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGadivgvg..iselsetqekveal 50 
                 l+Gk++lvtG  +G+G++ia+   + Ga++v ++  +sel+et+   +a 
  MMETSP1061-20121228|1003_1 128 LKGKRVLVTGGGRGIGRAIALICHDEGANVVITArtQSELEETIRL-AAA 176
                 89***************************99877334667777654.333 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 1.5e-14
   TIGR01832  33 vgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirred..avefsekdwddvlnvnlkavfllsqavakkl....lkqG...rkgk.iiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletn 189
                  +++ ++++ t+ + e+  +++     d++de+++++ v+++v+e g id+++nnaG  +  +     +  ++ + +l++n+    l++ av+k++    +++    ++ k i+ni+s     G  + + y ask a+ Glt   a+e+a+++++v +++PG ++t+
  MMETSP1061-20121228|1003_1 255 SSATSAAATATATASESA-ARMVYRVCDVTDESQVESAVQSVVAEEGDIDVVINNAGGAQSPKgpVGTLEGSQLEFLLKLNVLGPQLITSAVCKHApswkMDENdesSSPKvILNISSKAGKVGLQNYSLYVASKFALEGLTSCWAKELASRNVRVHSLSPGMVNTQ 420
                 222233333444444444.44555568******************************988665224577888999999***9999999999999863322333223244562569999888877778889**********************************997 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1     4e-05     0.012       3      40 ..     133     170 ..     131     200 .. 0.88
   2 !   48.0   0.5   8.7e-16   2.6e-13      39     186 ..     263     420 ..     237     426 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4e-05
   TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvapneerake 40 
                  lvtGg +GiG+ai+    ++G +vv + ++++e ++ 
  MMETSP1061-20121228|1003_1 133 VLVTGGGRGIGRAIALICHDEGANVVITARTQSELEET 170
                 59************************999998877665 PP

  == domain 2    score: 48.0 bits;  conditional E-value: 8.7e-16
   TIGR01829  39 kewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrd..avfkkmtkeqWeevidtnlnsvfnvtrpvie.....gmler...gfGr.iinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiate 186
                 ++ + ++e     ++    dv++  + ++av++v ae+G++dv++nnaG ++     +  ++  q e +++ n+ +   +t  v++     +m e+   +  + i+niss  G+ G    + y a+k  l G+t + a+e a+++v v  ++PG ++t+
  MMETSP1061-20121228|1003_1 263 TATATASESA-ARMVYRVCDVTDESQVESAVQSVVAEEGDIDVVINNAGGAQSpkGPVGTLEGSQLEFLLKLNVLGPQLITSAVCKhapswKMDENdesSSPKvILNISSKAGKVGLQNYSLYVASKFALEGLTSCWAKELASRNVRVHSLSPGMVNTQ 420
                 2222222222.34555668******************************9876225689999***********999988888887633333566541113334378****99999999999999********************************997 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   9.4e-08   2.8e-05     412     454 ..     128     170 ..     120     184 .. 0.88
   2 !   40.1   0.8   1.2e-13   3.4e-11     448     600 ..     257     418 ..     207     435 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 9.4e-08
   TIGR02632 412 larrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeav 454
                 l ++ +lvtGg+ GiGr++a+   deGa vv++   + ++e++
  MMETSP1061-20121228|1003_1 128 LKGKRVLVTGGGRGIGRAIALICHDEGANVVITARTQSELEET 170
                 677889**************************99999998887 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 1.2e-13
   TIGR02632 448 aeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavsk..pleeteleeWdlnldilatGyflvareaar...llrkqg.....lggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavl 600
                 a +a+a+a +      a + v  + dvtde++v++a++ v+ + G +d+v+nnaG a s+  p+   e ++ +  l++++ G  l++    +    ++  +      +  ++ i+sk + v  +n + y a+k a   l  + a ela+  +rv ++ P  v 
  MMETSP1061-20121228|1003_1 257 ATSAAATATATA-SESAARMVYRVCDVTDESQVESAVQSVVAEEGDIDVVINNAGGAQSPkgPVGTLEGSQLEFLLKLNVLGPQLITSAVCKhapSWKMDEndessSPKVILNISSKAGKVGLQNYSLYVASKFALEGLTSCWAKELASRNVRVHSLSPGMVN 418
                 333444444444.234555666789********************************998334455556677777899999*99987755441113443331111145568889********************************************98875 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   1.2   1.8e-05    0.0053       1      34 [.     128     161 ..     128     205 .. 0.82
   2 !   46.8   0.4   1.7e-15     5e-13      28     198 ..     249     430 ..     224     484 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.8e-05
   TIGR03206   1 lkdkvaivtgggggiggaicrrfaeegakvavld 34 
                 lk+k ++vtggg gig ai +   +ega+v +  
  MMETSP1061-20121228|1003_1 128 LKGKRVLVTGGGRGIGRAIALICHDEGANVVITA 161
                 799**************************98754 PP

  == domain 2    score: 46.8 bits;  conditional E-value: 1.7e-15
   TIGR03206  28 akvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdv..lkpflktekaewerliainltgalymhhavlk.....gmverkagr....ivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseae 198
                  ++av   ++ aa + +a+  e+  +     +d+td++ v+ av ++    g +dv++nnag  +   +p    e ++ e l+ +n+ g   +  av k      m e  +      i+ni+s a++vg    ++y a k  l  ++   a+ela +++ v  + pg  +t  +   +++a+
  MMETSP1061-20121228|1003_1 249 DAIAVGSSATSAAATATATASESAARMVYRVCDVTDESQVESAVQSVVAEEGDIDVVINNAGGAQspKGPVGTLEGSQLEFLLKLNVLGPQLITSAVCKhapswKMDENDESSspkvILNISSKAGKVGLQNYSLYVASKFALEGLTSCWAKELASRNVRVHSLSPGMVNTQSFPKPAGKAG 430
                 3566666666777777777777777777778******************************98662246888999************99887777766522222577776542233499***************************************************998866555443 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.97   2.8e+02     143     182 ..      89     130 ..      72     133 .. 0.71
   2 !   13.3   0.1   2.5e-05    0.0073       4      37 ..     133     166 ..     130     187 .. 0.80
   3 !   35.6   2.3   3.8e-12   1.1e-09      32     205 ..     237     416 ..     213     426 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.97
   TIGR02685 143 gtraelrssnlsivnl..vdamtdqpllgfslytmakealeG 182
                  t+a   s +++++ l    +m+ +pl+g +l + + + l+G
  MMETSP1061-20121228|1003_1  89 RTSAGHPSLTFAVIALsvLASMVAMPLMGRALSSSSSQLLKG 130
                 4666666777777765225789999*9999988777776666 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.5e-05
   TIGR02685   4 alvtGaakriGrsiavklhqeGyrvvlhyrrsae 37 
                  lvtG+ + iGr+ia   h+eG +vv+  r  +e
  MMETSP1061-20121228|1003_1 133 VLVTGGGRGIGRAIALICHDEGANVVITARTQSE 166
                 58*************************9876443 PP

  == domain 3    score: 35.6 bits;  conditional E-value: 3.8e-12
   TIGR02685  32 yrrsaeaasslaaelnaerans..avvvkadlsnsa..........sllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrq...kgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGl 205
                  r s+++ s+l++ +    + +  a ++ a  s+sa          +  s+ e  +++   + G  dv++nna     +p  +     g+ e+ +l      l+  n + p l++ a  +     k ++++  ss   i+n+     +  l  +sly  +k aleGlt + a elas+++rv +++pG+
  MMETSP1061-20121228|1003_1 237 ARASQSSVSKLVDAIAVGSSATsaAATATATASESAarmvyrvcdvTDESQVESAVQSVVAEEGDIDVVINNAGGAQ-SPKGPV----GTLEGSQL----EFLLKLNVLGPQLITSAVCKHApswKMDENDESSSPKVILNISSKAGKVGLQNYSLYVASKFALEGLTSCWAKELASRNVRVHSLSPGM 416
                 345555556666655544333300333334444444666666665566677888999999999*********97532.222222....22333333....347788888888888888776522244555566777889*************************************************8 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.4e-05     0.007       3      44 ..     133     170 ..     131     191 .. 0.87
   2 !   24.8   0.0   9.5e-09   2.8e-06      46     199 ..     265     420 ..     227     429 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.4e-05
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkes 44 
                 +lvtG  rG+Gr++a       + eg  +v+ aR +  L e+
  MMETSP1061-20121228|1003_1 133 VLVTGGGRGIGRAIALI-C---HDEGANVVITARTQSELEET 170
                 69************953.3...47*************99987 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 9.5e-09
   TIGR01500  46 aeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsn......vtslvvltsellkklkelq.glektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtd 199
                    +a  sa +++    d+  +++ve  ++++ ++ +       ++innaG      k+ +   +  +++   ++n      +ts+v+  +   k  ++ + +++k++ n+ss +    ++ ++lY ask a + +    a e    +v+v   +pG+++t+
  MMETSP1061-20121228|1003_1 265 TA-TASESAARMVYRVCDVTDESQVESAVQSVVAEEGD----IDVVINNAGGAQS-PKGPVGTLEGSQLEFLLKLNvlgpqlITSAVCKHAPSWKMDENDEsSSPKVILNISSKAGKVGLQNYSLYVASKFALEGLTSCWAKELAsRNVRVHSLSPGMVNTQ 420
                 33.34456666666678898888888888888776554....45899**998654.45544444555555555566000122455555555555444433459****************************************998**************98 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   3.3e-06   0.00097       1      49 [.     133     179 ..     133     206 .. 0.76
   2 !   24.1   2.2   1.5e-08   4.3e-06      26     185 ..     250     420 ..     224     427 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.3e-06
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggn 49 
                 vlvtg  rgigraial    +g ++ +  r  +++ ee++  + a g+ 
  MMETSP1061-20121228|1003_1 133 VLVTGGGRGIGRAIALICHDEGANVVITAR-TQSELEETIR-LAAAGSY 179
                 8************************99765.5677888775.4455544 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 1.5e-08
   TIGR01831  26 avhyrsdradaeesvaairaqggnarllk.fdvadrvavrevleadiaehgayygvvlnagiardaafp..alseedwdavietnldgfynvihplv..mp...mirarkgg...riitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidte 185
                 a+ + s++++a ++++a  ++ ++  + +  dv+d  +v +++++ +ae+g    v+ nag a+    p  +l   + + +++ n+ g   +   +    p   m +  +      i+ ++s +g +g +    y a+k  l g t   a ela+r++ v  ++pg+++t+
  MMETSP1061-20121228|1003_1 250 AIAVGSSATSAAATATATASESAARMVYRvCDVTDESQVESAVQSVVAEEGDIDVVINNAGGAQSPKGPvgTLEGSQLEFLLKLNVLGPQLITSAVCkhAPswkMDENDESSspkVILNISSKAGKVGLQNYSLYVASKFALEGLTSCWAKELASRNVRVHSLSPGMVNTQ 420
                 4445555666666665554444443333336******************************999887773267888999999999887655444332123411133333322111477889999999998888999*********************************97 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   2.5e-06   0.00073       3      45 ..     128     170 ..     126     193 .. 0.91
   2 !   17.0   0.4     2e-06   0.00057      43     190 ..     265     420 ..     231     455 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.5e-06
   TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvavldksaagleel 45 
                 lk++ vlvtgg+ g+gra+      ega+v +  +++ +lee 
  MMETSP1061-20121228|1003_1 128 LKGKRVLVTGGGRGIGRAIALICHDEGANVVITARTQSELEET 170
                 78899*******************************9999975 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 2e-06
   TIGR03325  43 eeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaal...palv......asrgsviftvs.nagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstd 190
                  +  ++ ++++v  + dv   ++ + av+  v++ g +d++i+nag  +     v   +      ++ + ++nv g  l   a+    p         +s   vi+ +s  ag       +ly a+k a+ gl    a ela + vrv  ++pg ++t+
  MMETSP1061-20121228|1003_1 265 TATASESAARMVYRVCDVTDESQVESAVQSVVAEEGDIDVVINNAGGAQSPKGPVGTLEG---SQLEFLLKLNVLGPQLITSAVCkhaPSWKmdendeSSSPKVILNISsKAGKVGLQNYSLYVASKFALEGLTSCWAKELASRnVRVHSLSPGMVNTQ 420
                 44556667788888999999999999*******************977666555544332...4567789999998655433332111322112222256678999996379999999***********************9744*********88764 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.2   6.6e-09   1.9e-06     134     200 ..     124     190 ..     119     202 .. 0.90
   2 ?   -3.7   0.7       3.4   9.9e+02     165     218 ..     260     311 ..     248     313 .. 0.44

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 6.6e-09
   TIGR02824 134 laklkagetvLihggasGiGttaiqlakalgakvlvtagsdekleaaekLGadvainyreedFvevv 200
                  ++l +g++vL+ gg  GiG +   +++  ga+v++ta+++  le + +L a+ + n  +ed  e  
  MMETSP1061-20121228|1003_1 124 SSQLLKGKRVLVTGGGRGIGRAIALICHDEGANVVITARTQSELEETIRLAAAGSYNTDNEDNEEDR 190
                 57899****************************************9999***999999999877655 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3.4
   TIGR02824 165 akvlvtagsdekle.aaekLGadvainyreedFvevvkeetegkGvdvilDivgg 218
                 a  ++ta   e ++ ++ ++  dv+ + + e+ v+ v +e+    +dv++   gg
  MMETSP1061-20121228|1003_1 260 AAATATATASESAArMVYRV-CDVTDESQVESAVQSVVAEEG--DIDVVINNAGG 311
                 33444444444443122222.344444444444444443333..27888877776 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3   1.2e-05    0.0035     111     162 ..     124     176 ..     116     195 .. 0.79
   2 ?   -1.5   0.0      0.81   2.4e+02     144     212 ..     204     281 ..     189     308 .. 0.50

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.2e-05
   TIGR00507 111 lsklksekrvliiGAG.GaakavaleLlkadkeviiaNRtvekaeelaerlqe 162
                  s+l ++krvl+ G G G ++a+al   +++ +v+i+ Rt++  ee +   ++
  MMETSP1061-20121228|1003_1 124 SSQLLKGKRVLVTGGGrGIGRAIALICHDEGANVVITARTQSELEETIRLAAA 176
                 4555569*******99999*********************9999887766554 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.81
   TIGR00507 144 iiaNRtvekaeelaerlqe...lgeilals..leevelkkvdliinatsaglsgeid....eaevkaellkegklvvD 212
                 ++a Rt  ++  +a+r+ +   +g+  + s   ++  +++v+ +++a+++g s   +     a+ +++ ++    v+D
  MMETSP1061-20121228|1003_1 204 LLARRTGGRSSSVASRVGRdtsVGSRRTGSasKARASQSSVSKLVDAIAVGSSATSAaataTATASESAARMVYRVCD 281
                 556667677777777666655633333332003333333355555555555444432110033333333444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.51
# Mc/sec: 1325.07
//
Query:       MMETSP1061-20121228|1006_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|1010_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 965.92
//
Query:       MMETSP1061-20121228|1017_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 273.41
//
Query:       MMETSP1061-20121228|1012_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   11.8   1.2       0.14   10.1   0.3    2.0  2  TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein


Domain annotation for each model (and alignments):
>> TIGR01837  PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.034   1.4e+02      19      72 ..      16      32 ..       4      81 .. 0.69
   2 ?   10.1   0.3   3.5e-05      0.14      19      88 ..      77     149 ..      73     152 .] 0.87

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.034
   TIGR01837 19 rvqeegsklfdeLVkeGekaekrakkrvdksvdalreevktkleqvrdkvqrnl 72
                r++ e+sk++d+                                     ++r++
  MMETSP1061-20121228|1012_1 16 RMEGEASKMLDA-------------------------------------IERQW 32
                344444444443.....................................33333 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 3.5e-05
   TIGR01837  19 rvqeegsklfdeLVkeGekaekrakkrvdksvda.lr..eevktkleqvrdkvqrnldklekafdervesvln 88 
                  +q+e +++ ++L ++ ++ + +a+  +   +++ +r    v+++l +  ++ +++  +l + + +r+ svl+
  MMETSP1061-20121228|1012_1  77 LIQQEVAQFQNRLNRNMQECQEKARDMISPGMEQdARavSRVENALIKCMEQQVNDHIQLLQPMKDRITSVLK 149
                 689999***************9999999999986344778999999999999999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 647.17
//
Query:       MMETSP1061-20121228|1018_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1061-20121228|1019_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 609.66
//
Query:       MMETSP1061-20121228|1023_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   11.6   0.0      0.023   11.2   0.0    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.5e-06     0.023     154     288 ..      92     226 ..      74     242 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.5e-06
   TIGR01651 154 aeklvdllrefieekaak.dldrlsaaiddqqafarvvrellaslelaeelgddeesedeedtdddqpredeqeeegeeeeegdeasaaeeaea.aeeeees.geeeaaeaddddlsdeddedaetpgeakrpdrpft 288
                 ae +  ++r+ +  +a++ d+  l+ +    + f    r++ ++ ++ e +g+++++  ++ +   +  + + +  g+ + + +  s++ +++   ++ +++ +++ ++  +++  +++   +a  +g ++ p  p t
  MMETSP1061-20121228|1023_1  92 AEDIRLVWRNCMTYNADGsDFWLLAKSY--ARRFEDRYRKIRQEYDVGEGIGEKSKDGGSSGGTTGKGGGGSSSGGGGSK-SRSSRSPSSNNNNnNNNSSNNnSNNGSSSNSNNHNNNNASSSASKMGGGRVPTAPPT 226
                 5555556777777666541444444333..3457777899999**********999999999888888777766655554.444444444444403333333033334444445555566667788999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1357.60
//
Query:       MMETSP1061-20121228|1021_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.46
# Mc/sec: 493.52
//
Query:       MMETSP1061-20121228|1024_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-23   79.2   0.0    2.5e-16   57.9   0.0    3.1  3  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    1.5e-13   47.9   0.0    2.1e-13   47.4   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.5e-13   48.4   0.0    4.9e-13   46.7   0.0    1.7  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
      9e-13   46.3   0.0    2.1e-12   45.1   0.0    1.6  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
      1e-11   42.7   0.0    1.7e-11   41.9   0.0    1.3  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.1e-11   42.5   0.0      4e-11   40.6   0.0    1.8  1  TIGR02415 23BDH: acetoin reductases
    3.1e-11   41.2   0.0    1.4e-10   39.1   0.0    1.9  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    5.7e-11   40.1   0.0      8e-11   39.6   0.0    1.3  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.1e-09   35.0   0.0      3e-09   34.5   0.0    1.3  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    6.1e-09   33.3   0.0    9.7e-09   32.7   0.0    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    2.8e-05   21.5   0.0    4.3e-05   20.9   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0037   14.5   0.0     0.0055   13.9   0.0    1.3  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9   0.0   7.3e-19   2.5e-16       4     131 ..      89     222 ..      86     229 .. 0.81
   2 !    9.8   0.0   0.00033      0.11     180     231 ..     248     301 ..     226     306 .. 0.77
   3 !    8.0   0.0    0.0011      0.39     290     314 ..     368     392 ..     352     393 .. 0.83

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 7.3e-19
   TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaaksl.......glpkds.ytilkldlasldsvrkfveqfresgr.sldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkks 131
                 + v+itg s+glgl++ak l++ g   +v++ r + k ek+ + +       g++++     l ldl  l+sv+ f +++ ++g  ++d+l+ na v    + + + + dgye +  +nhlghf+l+  l+  l +s
  MMETSP1061-20121228|1024_1  89 KVVLITGGSTGLGLESAKRLAAAG-ATIVLTARSVAKGEKSIEAVqsyltekGVSAGPkIFTLVLDLDDLESVKAFPSSYEKLGLgNIDVLMNNAGVM--AIPDRQLTKDGYERTFQSNHLGHFVLTAGLFPFLSRS 222
                 5799********************.899999*****99987654422222226666541334679*****************995389******9996..4567789*******************99887766665 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00033
   TIGR01289 180 dgkefkaakaykdsklcnmltvrelhrryhdetg....ivfaslypgcvadtglfr 231
                  +k++ a  +y  skl+n+l ++el rr   etg    ++  +l+pg v  t l r
  MMETSP1061-20121228|1024_1 248 GEKKYGAWSSYGLSKLSNILFTQELQRRAD-ETGdsswLTAVTLHPGAVQ-TDLGR 301
                 3567888899****************9975.444333388999****984.56655 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0011
   TIGR01289 290 elseevsddekakklwelseklvgl 314
                 +l   + d++kak+lwe+se l g+
  MMETSP1061-20121228|1024_1 368 NLPAFANDAAKAKQLWEISEDLGGV 392
                 5555689**************9886 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.0     6e-16   2.1e-13     407     535 ..      81     215 ..      74     233 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 6e-16
   TIGR02632 407 PkekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava.......lkldvtdeeavkaafae.valayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvarea 535
                 P+  +l+ +v+l+tGg++G+G e a+rl++ Ga +vl+    ++ e+  ++++  + ++k+v+       l+ld+ d e+vka       l  G +d+++nnaG++  ++ +  +++ ++++++ +  G+f+++   
  MMETSP1061-20121228|1024_1  81 PPAGSLTDKVVLITGGSTGLGLESAKRLAAAGATIVLTARSVAKGEKSIEAVQ-SYLTEKGVSagpkiftLVLDLDDLESVKAFPSSyEKLGLGNIDVLMNNAGVMAIPDRQL-TKDGYERTFQSNHLGHFVLTAGL 215
                 88889*********************************999999988887776.6666666666888888***********986554146789************98777665.56789999999999999887655 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.4e-15   4.9e-13       2     137 ..      89     231 ..      88     240 .. 0.83
   2 ?   -1.7   0.0      0.84   2.9e+02     173     204 ..     285     315 ..     253     353 .. 0.70

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 1.4e-15
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle....eeaaeaaakeleeaggev....lalkadvtkeeeiadlieavaa.efgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriinias 137
                 kv+l+tG ++G+gl+ ak+laaaGa++v++  +    e++ ea+++ l+e+g+++     +l++d+ + e+++   +  ++  +g++d+L+nnAG+  + p  +   + +e+  + n  + f+++   +p + +++   +in++s
  MMETSP1061-20121228|1024_1  89 KVVLITGGSTGLGLESAKRLAAAGATIVLTARSvakgEKSIEAVQSYLTEKGVSAgpkiFTLVLDLDDLESVKAFPSSYEKlGLGNIDVLMNNAGVMAI-PDRQLTKDGYERTFQSNHLGHFVLTAGLFPFLSRSK-ATVINVSS 231
                 99**************************99887656666677777777777765522116899**********99988776369************887.557899999***999999999*99999999998766.46888887 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.84
   TIGR01963 173 itanaicPgyvrtpLvekqiadqaktrgisee 204
                 +ta ++ Pg v+t L +  ia + k ++++++
  MMETSP1061-20121228|1024_1 285 LTAVTLHPGAVQTDLGR-NIAGEEKWNKLKNN 315
                 68889999999999865.45555555555554 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   6.2e-15   2.1e-12       1     135 [.      91     231 ..      91     320 .. 0.77

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 6.2e-15
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviters...keekaeelaeelkeagv....kaaavkldvsdeeevkelveevee.elgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriiniss 135
                 +l+tG+s g+G + ak+la++ga++v+t rs    e+++e++++ l+e+gv    k  +++ld+ d e+vk++ ++ e+  lg+id+l+nnAG+       +++++ +++  + n  g f +t      + ++ +  +in+ss
  MMETSP1061-20121228|1024_1  91 VLITGGSTGLGLESAKRLAAAGATIVLTARSvakGEKSIEAVQSYLTEKGVsagpKIFTLVLDLDDLESVKAFPSSYEKlGLGNIDVLMNNAGVMAI-PDRQLTKDGYERTFQSNHLGHFVLTAGLFPFLSRS-KATVINVSS 231
                 69*************************9875221567788899999998772222568899***********99998873589***********863.334678999*************9998888777765.568999999 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   4.9e-14   1.7e-11       2     147 ..      85     239 ..      84     242 .. 0.74

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 4.9e-14
   TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgisels..etqekve........alGrkflslkadladeeaakalvdeaveeag..kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiinias.llsfqGG 147
                 sl  kv+l+tG +tGlG   a  la+aGa iv +++s ++  +++e+v+        + G k+ +l +dl d e++ka+ ++  e+ g  +id+l+nnaG++   d  ++++  ++  ++ n    f+l+  +   +l +  k+ +in++s    f GG
  MMETSP1061-20121228|1024_1  85 SLTDKVVLITGGSTGLGLESAKRLAAAGATIVLTARSVAKgeKSIEAVQsyltekgvSAGPKIFTLVLDLDDLESVKAFPSS-YEKLGlgNIDVLMNNAGVMAIPDR-QLTKDGYERTFQSNHLGHFVLTAGLF-PFLSRS-KATVINVSSeAYQFTGG 239
                 6899***************************988765432113444443111112224578999*************76655.5554434***********998885.79999999999999999999987664.566666.78888888723456665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   1.2e-13     4e-11       1     194 [.      89     306 ..      89     326 .. 0.69

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 1.2e-13
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadln....eetaketakelkekgtka....vavkldvsdkseveeaveqavek..lGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasia..............gvegspelsaysstkfavrgltqta...akeLa.kkgitvnayaPGivktemreeidek 194
                 kv l+tG++ G+G + a+rLa+ G  ++++       e+++ ++++ l+ekg  a      ++ld+ d ++v+ a  +++ek  lG++dvl+nnaGv ++ p  ++t++  e+ ++ n  g  f + a    f   ++k  +in +s a              g + +   s y  +k +   +tq     a e   ++  t  +  PG v+t++ ++i+ +
  MMETSP1061-20121228|1024_1  89 KVVLITGGSTGLGLESAKRLAAAGATIVLTARSvakgEKSIEAVQSYLTEKGVSAgpkiFTLVLDLDDLESVK-AFPSSYEKlgLGNIDVLMNNAGVMAI-PDRQLTKDGYERTFQSNHLGH-FVLTAGLFPFLS-RSKATVINVSSEAyqftggkfdldnlnGEKKYGAWSSYGLSKLSNILFTQELqrrADETGdSSWLTAVTLHPGAVQTDLGRNIAGE 306
                 799*************************9876666778999999999*9999887443245677887777664.5667777723579**********998.6689*************9996.668888888875.56778889888772222221111111122223333445557777767776541113333313346777777888888877777655 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0     4e-13   1.4e-10       1     191 [.      89     303 ..      89     315 .. 0.73

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 4e-13
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvap......neerakewlqekeve.gfdvavvkadvssfeeakaavakvea.elGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriiniss..............vnGlkGqfGqanysaakaGliGftkalaqegakkg....vtvnviaPGyiatemvkav 191
                 +v l+tGg+ G+G + +krla++G ++v + ++        e+ +++l ek+v+ g ++  +  d+ + e+ ka  ++ e+  lG++dvl+nnaG+      +++tk+ +e   + n  + f +t  ++   l r+   +in+ss              +nG k     + y  +k   i ft+ l + + ++g    +t  ++ PG ++t++ +++
  MMETSP1061-20121228|1024_1  89 KVVLITGGSTGLGLESAKRLAAAGATIVLTARSvakgekSIEAVQSYLTEKGVSaGPKIFTLVLDLDDLESVKAFPSSYEKlGLGNIDVLMNNAGVMA-IPDRQLTKDGYERTFQSNHLGHFVLTAGLFPF-LSRSKATVINVSSeayqftggkfdldnLNGEKKYGAWSSYGLSKLSNILFTQELQRRADETGdsswLTAVTLHPGAVQTDLGRNI 303
                 799***********************9877654221111234456677777775267899999********9998887765379***********975.44588999*********************985.578889999*998555544444444334565555555667777777788887775443333222237777788888888876665 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   2.4e-13     8e-11       1     143 [.      86     235 ..      86     317 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 2.4e-13
   TIGR03206   1 lkdkvaivtgggggiggaicrrfaeegakvavldlna....eaaekvaaairekggka....eavavditdrasvdaavaaaee.algpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaar 143
                 l dkv+++tgg+ g+g    +r+a  ga + +   +     ++ e v + ++ekg +a     ++  d+ d +sv+a  ++ e+ +lg +dvl+nnag   + +   t k  +er    n  g + +    l  ++ r +  ++n++s+a +
  MMETSP1061-20121228|1024_1  86 LTDKVVLITGGSTGLGLESAKRLAAAGATIVLTARSVakgeKSIEAVQSYLTEKGVSAgpkiFTLVLDLDDLESVKAFPSSYEKlGLGNIDVLMNNAGVMAIPDRQLT-KDGYERTFQSNHLGHFVLTA-GLFPFLSRSKATVINVSSEAYQ 235
                 579**************************98876665111134455666666776555221168899*********9887765449*************999776666.5679*********9877765.55557899999*******9965 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   8.8e-12     3e-09       2     178 ..      87     265 ..      86     354 .. 0.75

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 8.8e-12
   TIGR03971   2 eGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveeg.veefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssva........glkalpglahyaa.akhGlvgltk 178
                   kv litG + G G   a rlaa Ga i+    ++++++  +   a +  l    k v  +G k+ + + d+ +le ++a   +     +G +dv+++naGv+++    +l+++ ++ + + n  G +       P l   k   ++i vss a         l  l+g+  y a + +Gl  l +
  MMETSP1061-20121228|1024_1  87 TDKVVLITGGSTGLGLESAKRLAAAGATIVLT--ARSVAKGEKSIEAVQSYLT--EKGVS-AGPKIFTLVLDLDDLESVKAFPSSYeKLGLGNIDVLMNNAGVMAIPD-RQLTKDGYERTFQSNHLGHFVLTAGLFPFLSRSK--ATVINVSSEAyqftggkfDLDNLNGEKKYGAwSSYGLSKLSN 265
                 679**************************975..5667667766778888775..56675.69****************9976543033579************9965.68*****************999988999887777..788889887632222222244455555554435566655555 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   2.8e-11   9.7e-09       3     150 ..      86     239 ..      84     246 .. 0.72

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 2.8e-11
   TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvavldksa....agleeleaahgdkvvgvegdvrlld...dhkeavarcveafgkldtlipnagiwdystalvdipddri.deafdevfeinvkgyllavkaalpalvasrgsviftvsnagfypng 150
                 l+d+vvl+tgg++glg    +r  a ga + +  +s+    + +e++++  ++k v+    + +l    d+ e+v+   +++ kl   ++n+ +   ++ ++ ipd ++ ++ ++  f+ n  g+++     +p l  s+ +vi   s+a  +++g
  MMETSP1061-20121228|1024_1  86 LTDKVVLITGGSTGLGLESAKRLAAAGATIVLTARSVakgeKSIEAVQSYLTEKGVSAGPKIFTLVldlDDLESVKAFPSSYEKLG--LGNIDVLMNNAGVMAIPDRQLtKDGYERTFQSNHLGHFVLTAGLFPFLSRSKATVINVSSEAYQFTGG 239
                 89***************************998887751111568888887777666655554433211233445555445554443..4555555555556789*98872578************9999999***********9988888666554 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.3e-07   4.3e-05       2     151 ..      90     231 ..      89     235 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.3e-07
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedl..lkaleesikkeeyeri.llinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlss 151
                 ++l+tG s G+G e a++la      g ++vL aR+     +s + +++  +++ v   +  +  + d++dl  +ka   s +k ++  i +l+nnaG +    ++       +  ++ ++sn     vlt+ l+  l     ++ tv+n+ss
  MMETSP1061-20121228|1024_1  90 VVLITGGSTGLGLESAKRLAA----AGATIVLTARSVAKGEKSIEAVQSYLTEKGVSAGPKIFTLVLDLDDLesVKAFPSSYEKLGLGNIdVLMNNAGVMAIPDRQLT----KDGYERTFQSNHLGHFVLTAGLFPFLS---RSKATVINVSS 231
                 689**********99998887....9**********999999999999888888888777766666666654226777777788888887578899998887777777....67889***************9988887...88999***998 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.6e-05    0.0055       1      45 [.      91     134 ..      91     184 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.6e-05
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaaira 45 
                 vl+tg s g+g   a +laa+g  i +  rs + + e+s++a+++
  MMETSP1061-20121228|1024_1  91 VLITGGSTGLGLESAKRLAAAGATIVLTARSVA-KGEKSIEAVQS 134
                 89***********************99988754.44445555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1220.17
//
Query:       MMETSP1061-20121228|1020_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-26   91.8  11.1    1.2e-25   88.5   7.7    2.0  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    8.8e-22   75.1   4.4    1.5e-21   74.4   3.0    1.3  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0024   15.8   0.0     0.0045   14.9   0.0    1.4  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   7.7   8.9e-29   1.2e-25       1     101 [.      43     150 ..      43     233 .. 0.82

  Alignments for each domain:
  == domain 1    score: 88.5 bits;  conditional E-value: 8.9e-29
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg...ekeaeekfkeineAyevLsdeekraqYDqfghagleggagg...ggagfegfea.....sefgdigdifeeffg 101
                 +YY +Lg++k+A+e+eik+AYrkla +yHPD+ k+     eae+ f +++eAy vLsd+ekr+ YD++g++gl++ ++g   ++agf gf+            +  f+ f +
  MMETSP1061-20121228|1020_1  43 NYYAVLGLTKKAKEKEIKSAYRKLALQYHPDKVKEgedAVEAENIFVKVSEAYSVLSDKEKRKIYDRYGKNGLDAFEKGqdpASAGFGGFSGgggggG----GHGGFGGFGQ 150
                 6*******************************99866567899*****************************99976663342333333332322220....3333333333 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   3.0   1.1e-24   1.5e-21       3      73 ..      43     117 ..      41     126 .. 0.91

  Alignments for each domain:
  == domain 1    score: 74.4 bits;  conditional E-value: 1.1e-24
   TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka....adaakifaeineandvLsnPkkraryDkyGhDGvDr 73 
                 +yy vLg+++ a e+eik a+rkLa +yhPD+ k+     +a++if  + ea+ vLs+ +kr+ yD+yG +G+D 
  MMETSP1061-20121228|1020_1  43 NYYAVLGLTKKAKEKEIKSAYRKLALQYHPDKVKEgedaVEAENIFVKVSEAYSVLSDKEKRKIYDRYGKNGLDA 117
                 6******************************988642235789******************************96 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.3e-06    0.0045       5      53 ..      56     104 ..      53     107 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.3e-06
   TIGR00714   5 ekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkR 53 
                 ek ++  yrkl  qyHPD  k+  +   a +   ++ +Ay+ L d  kR
  MMETSP1061-20121228|1020_1  56 EKEIKSAYRKLALQYHPDKVKEGEDAVEAENIFVKVSEAYSVLSDKEKR 104
                 6788999***********9999999899999999*********998777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.52
# Mc/sec: 1231.05
//
Query:       MMETSP1061-20121228|1034_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.31
# Mc/sec: 447.06
//
Query:       MMETSP1061-20121228|1030_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-42  142.6   0.0    3.6e-42  142.1   0.0    1.1  1  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.1   0.0   8.8e-46   3.6e-42      13     190 ..      98     282 ..      87     284 .. 0.90

  Alignments for each domain:
  == domain 1    score: 142.1 bits;  conditional E-value: 8.8e-46
   TIGR00493  13 rgera..fdiysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaGlaiydtmqfikp...dvsticiGlaasmGafllaaGakGkrlalpnsrimihqplG...GaqGqasdieiqakeilklkkklnellaektGqslekiekdterdfflsaeeakeyGlidkvl 190
                 + +ra   di s + ++  +++s  +++e an i+a ll++ +e     isly n pGG +   laiyd +q+ k    ++ t  +Gl + mG+fl aaG+kG r a+pnsr ++   +G    ++Gqa+di ++ k+i   +++ +e l++ tGq+l++i++d +rdf+lsa+ea++yGlid+vl
  MMETSP1061-20121228|1030_1  98 NSDRAqmVDINSAMYRDGTLMISRFIDEEAANEIIAILLWMRSETDIPSISLYFNVPGGLLRPALAIYDLIQQTKEqgvEIETCNLGLCTGMGSFLCAAGTKGMRRAMPNSRFLLQ-RMGldkPVRGQATDIVLEVKNIKLWNDRCEEELSKLTGQPLDRIQNDLKRDFYLSADEAVRYGLIDEVL 282
                 44443227******************************************************************97333689999***************************9885.455233589**********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1588.42
//
Query:       MMETSP1061-20121228|1036_1  [L=1091]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    6.1   8.7      0.068   10.2   1.9    1.8  2  TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase


Domain annotation for each model (and alignments):
>> TIGR03023  WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   1.9   1.7e-05     0.068     112     248 ..       5     140 ..       2     156 .. 0.79
   2 ?   -2.2   0.2     0.097     4e+02     140     191 ..     364     412 ..     342     416 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.7e-05
   TIGR03023 112 rlllrlllkelrkkgvnkrrvvivGagelgerlaealkkeeelglrvlgflddesekaesevekvpvlgk.ldelvelireeevdevlialplaaekrikelleeledstvevklvpdlfelallkarieevaglpli 248
                 r+ +r++ k++++ ++n +   i  ++++ ++ ++++++++  +  v  + +++++k+es+ ek++ +++ + + +  ir+ ++  +++al+ ++ ++i  l + +e +  +++ +pd+++++ ++ + e+++g+  i
  MMETSP1061-20121228|1036_1   5 RISIRKIAKHMMSGKLNGKISKISVKKSKKKKNSDEIQRNK-NQNPVSSVTKTSNSKKESTSEKLSAAEEvVTQRIMQIRKYHAAAIVFALESNHTEKIFCLASTVEST-QAIEEIPDINTIRNANTNPEQLDGIAKI 140
                 78889999999998888888888888888889999999884.44556666666666666666676666652466778899999****************9988888765.789*******************999876 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.097
   TIGR03023 140 lgerlaealkkeeelglrvlgflddesekaesevekvpvlgkldelvelire 191
                 ++e+++e+l+++e+ + +++++++++ ++a++   + + ++k++el++++++
  MMETSP1061-20121228|1036_1 364 NTESILEELARKETEEQELVAAVEKQVREARE---NFEKATKVSELATYLHR 412
                 56788999999999999999999999988766...55666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       346  (0.0843491); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.07s 00:00:00.53 Elapsed: 00:00:00.76
# Mc/sec: 1894.74
//
Query:       MMETSP1061-20121228|1032_1  [L=922]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (922 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:00.44
# Mc/sec: 2765.77
//
Query:       MMETSP1061-20121228|1040_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.21
# Mc/sec: 2910.05
//
Query:       MMETSP1061-20121228|1042_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1046.14
//
Query:       MMETSP1061-20121228|1044_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 2118.59
//
Query:       MMETSP1061-20121228|1052_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-12   45.7   0.1    1.8e-12   45.4   0.1    1.1  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    3.1e-11   41.1   0.5    3.6e-10   37.7   0.4    2.1  1  TIGR01351 adk: adenylate kinases
    1.9e-09   35.3   0.1    4.9e-09   34.0   0.1    1.6  1  TIGR01360 aden_kin_iso1: adenylate kinase
    1.4e-07   29.4   0.3    2.3e-06   25.5   0.2    2.1  1  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
      9e-05   19.0   0.5    0.00014   18.4   0.3    1.3  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
    0.00073   17.3   0.7      0.032   11.9   0.0    2.2  2  TIGR00152 TIGR00152: dephospho-CoA kinase
    0.00099   16.7   2.3      0.088   10.3   0.2    2.6  2  TIGR00041 DTMP_kinase: thymidylate kinase
     0.0024   14.3   0.1     0.0038   13.6   0.0    1.5  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
     0.0025   15.7   2.2      0.036   11.9   0.2    2.1  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0026   14.7   0.0     0.0041   14.0   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0066   13.9   1.7       0.07   10.5   1.2    2.1  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
     0.0067   13.3   0.0      0.014   12.3   0.0    1.5  1  TIGR02881 spore_V_K: stage V sporulation protein K
      0.009   13.5   0.0      0.013   13.0   0.0    1.3  1  TIGR00017 cmk: cytidylate kinase
  ------ inclusion threshold ------
      0.011   12.8   0.7      0.019   12.0   0.1    1.6  2  TIGR01420 pilT_fam: twitching motility protein
      0.015   12.4   0.8      0.044   10.8   0.1    1.8  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      0.017   10.9   0.7      0.035    9.8   0.3    1.6  2  TIGR01448 recD_rel: helicase, RecD/TraA family
      0.023   12.0   0.6      0.094    9.9   0.1    2.0  2  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
      0.026   12.0   0.1       0.79    7.2   0.0    2.1  2  TIGR03263 guanyl_kin: guanylate kinase
      0.034   11.8   0.4      0.056   11.0   0.3    1.7  1  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
      0.085    9.9   0.1      0.085    9.9   0.0    2.0  3  TIGR00064 ftsY: signal recognition particle-docking protein FtsY


Domain annotation for each model (and alignments):
>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.1   8.9e-15   1.8e-12       3     125 ..      13     138 ..      12     175 .. 0.74

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 8.9e-15
   TIGR02173   3 ivisGpPGsGkttvakilaeklslklisaGk.irelaekkgldla.eskkaeeekeiDkkiDrkikeiaekeknvvlesrlagWllkeyaDvkiylkaslevraeriakr..enksltealkeiier 125
                 + ++G PG+Gktt a+ +ae+ +++++s G+ irel   +g d + +++  +e+k +D  ++  +   ae+ek +v++ ++     +   D+ + l+ s +v   r++ r  ++k+ +e ++  i +
  MMETSP1061-20121228|1052_1  13 VLVTGTPGTGKTTTASLIAERTGMQHVSVGElIRELKCYEGRDEElDTNVLDEDKLLD-AMEVILDKAAEEEKGIVVDFHVCEIFPERWFDLVLCLRTSTNVLFDRLTARgyNEKKRSENMEAEIMQ 138
                 789***************************758***9988887541455555555555.456667788999*************************************9944223333333322223 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.4   1.8e-12   3.6e-10       2     131 ..      13     125 ..      12     178 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 1.8e-12
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRricp 131
                 +++ G PG+GK T a+ +ae++g++h+s G+l+R+    ++   +   ++l++ kl++    ++++ ++    ++eekg+++D      + +e++ e        +d v+ l+++++vl++r++ R  ++
  MMETSP1061-20121228|1052_1  13 VLVTGTPGTGKTTTASLIAERTGMQHVSVGELIRELKCYEGRDEELDTNVLDEDKLLDA---MEVILDKA---AEEEKGIVVD-----FHVCEIFPER------WFDLVLCLRTSTNVLFDRLTARGYNE 125
                 6789*******************************888888888888889999999875...34444444...4457888888.....4455666543......37788888888888888888885544 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.1   2.4e-11   4.9e-09       4     139 ..      11     133 ..       8     153 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 2.4e-11
   TIGR01360   4 kiifivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekriaeaklvlyldvsedtlvkrllkraetsarvddnek 139
                 + + + G pG+Gk t    i e+ G+ h+s G+l+r e++    r ++l       +++ +d++ld ++  l ka+e+ kG ++d +  e+     f +r    +lvl+l +s + l +rl +r+    +  +n +
  MMETSP1061-20121228|1052_1  11 PFVLVTGTPGTGKTTTASLIAERTGMQHVSVGELIR-ELKCYEGRDEELDT-----NVLDEDKLLDAMEVILDKAAEEEKGIVVDFHVCEI-----FPERW--FDLVLCLRTSTNVLFDRLTARGYNEKKRSENME 133
                 678999*****************************9.57888888888753.....55667778888888888999*********887766.....55554..369******************988875555443 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.2   1.1e-08   2.3e-06       2      61 ..      13      71 ..      12     173 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 1.1e-08
   TIGR01359  2 vfvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPs 61
                v+v G PG+Gk t  + i e+ ++ h+s G+l+re +  eg +++el ++++ e k++ +
  MMETSP1061-20121228|1052_1 13 VLVTGTPGTGKTTTASLIAERTGMQHVSVGELIRELKCYEG-RDEELDTNVLDEDKLLDA 71
                5788******************************9887664.566777777777777654 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.3   6.8e-07   0.00014     162     182 ..       9      29 ..       7      46 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.8e-07
   TIGR01447 162 ksnfslitGGPGTGKTttvar 182
                 ++ f+l+tG PGTGKTtt+  
  MMETSP1061-20121228|1052_1   9 TRPFVLVTGTPGTGKTTTASL 29 
                 578***************864 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00015     0.032       3      36 ..      14      47 ..      12      70 .. 0.87
   2 ?    4.3   0.0     0.034         7     121     156 ..      98     133 ..      68     173 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00015
   TIGR00152  3 gltGgigsGKstvakilkdkyklpvidADkiarq 36
                 +tG +g+GK+t+a +++++ +++ +    ++r+
  MMETSP1061-20121228|1052_1 14 LVTGTPGTGKTTTASLIAERTGMQHVSVGELIRE 47
                59*****************999988887777776 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.034
   TIGR00152 121 eklvdkvivvevskelqlerlmkrdelseeevkkll 156
                 e ++d v+ +  s ++   rl +r  +++++ +++ 
  MMETSP1061-20121228|1052_1  98 ERWFDLVLCLRTSTNVLFDRLTARGYNEKKRSENME 133
                 679999999***********9999744443333222 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.2   0.00043     0.088       6      53 ..      12      48 ..       8      95 .. 0.68
   2 ?    5.5   0.1     0.012       2.6     130     175 ..     102     149 ..      88     174 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00043
   TIGR00041  6 fiviEGidGaGKTtqlellkkllkeeglkvlltrEPggtklgekirel 53
                f+++ G  G+GKTt + l++++   +              +ge+irel
  MMETSP1061-20121228|1052_1 12 FVLVTGTPGTGKTTTASLIAERTGMQ-----------HVSVGELIREL 48
                999****************9987664...........33455555555 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.012
   TIGR00041 130 dlvilLdidpevalerlskrge..ldreelekldflekvrekylelad 175
                 dlv+ L +  +v   rl +rg   ++r+e +++++++ + e+  e  +
  MMETSP1061-20121228|1052_1 102 DLVLCLRTSTNVLFDRLTARGYneKKRSENMEAEIMQVILEEARESYA 149
                 89******************9965445665555554444333333322 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.9e-05    0.0038     314     340 ..      12      37 ..       5      84 .. 0.78
   2 ?   -3.2   0.0       2.4   4.9e+02     100     132 ..     127     160 ..     118     174 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.9e-05
   TIGR03922 314 HlllaGPPGtGkttiArvvakiyaGlg 340
                  +l+ G PGtGktt+A  +a+  +G+ 
  MMETSP1061-20121228|1052_1  12 FVLVTGTPGTGKTTTASLIAER-TGMQ 37 
                 45678************99986.4554 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.4
   TIGR03922 100 arsewldarwvrvvlyyrtqRWs.dvleqltpav 132
                 +rse ++a+ ++v+l  + + ++ +++++++  +
  MMETSP1061-20121228|1052_1 127 KRSENMEAEIMQVILEEARESYAhEIVHEVPSNT 160
                 5566666666666666655555424555555543 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.2   0.00018     0.036     198     226 ..      10      38 ..       2      42 .. 0.76
   2 ?    3.8   0.0     0.049        10     120     182 ..     107     180 ..      55     183 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00018
   TIGR03499 198 ggviaLvGptGvGKTTTlAKLAarfvleh 226
                 +  +++ G +G GKTTT   +A r  ++h
  MMETSP1061-20121228|1052_1  10 RPFVLVTGTPGTGKTTTASLIAERTGMQH 38 
                 3356667************9999988875 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.049
   TIGR03499 120 lkellekqlselal.....eeedperakllkklleagvseelarelleklke......kedaeeareklreaLe 182
                 l+ + + ++++l++     ++++++++  + + + ++  e++a+e++ +++       +++ +++ ++ +++L+
  MMETSP1061-20121228|1052_1 107 LRTSTNVLFDRLTArgyneKKRSENMEAEIMQVILEEARESYAHEIVHEVPSntiddmDNNVSRVEQWAKQWLQ 180
                 55555666666655666664444444444555555678888999999999887776666666777777777766 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     2e-05    0.0041      32      57 ..      12      37 ..       4      49 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2e-05
   TIGR00635 32 hvllyGPPGlGkttlakiiakelgvk 57
                 vl++G PG Gktt a++ia+  g++
  MMETSP1061-20121228|1052_1 12 FVLVTGTPGTGKTTTASLIAERTGMQ 37
                689*****************986654 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   1.2   0.00034      0.07      33      69 ..      12      48 ..       8     156 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00034
   TIGR02982 33 iviltGpsGsGkttlltligglrsvqeGelkvlgkel 69
                 v++tG+ G+Gktt  +li+    +q+ ++  l +el
  MMETSP1061-20121228|1052_1 12 FVLVTGTPGTGKTTTASLIAERTGMQHVSVGELIREL 48
                699****************987777776666555553 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   6.8e-05     0.014      45      78 ..      13      45 ..       6      50 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.8e-05
   TIGR02881 45 mifkGnPGtGkttvarllaklfkelnvlskGhli 78
                ++ +G PGtGktt a l+a+  + ++ +s G+li
  MMETSP1061-20121228|1052_1 13 VLVTGTPGTGKTTTASLIAER-TGMQHVSVGELI 45
                6789**************974.456666666665 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   6.6e-05     0.013       5      61 ..      13      72 ..       9      92 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.6e-05
   TIGR00017  5 iaiDGPsaaGKstvakalaeklgykyldsGalYRvlalva.lqnkvd..lededalleli 61
                + + G  ++GK+t a  +ae+ g ++++ G+l R l      ++++d  + ded+ll+ +
  MMETSP1061-20121228|1052_1 13 VLVTGTPGTGKTTTASLIAERTGMQHVSVGELIRELKCYEgRDEELDtnVLDEDKLLDAM 72
                5678999***************************98655436666551166899888654 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   9.3e-05     0.019     120     145 ..       8      32 ..       3      42 .. 0.82
   2 ?   -2.9   0.0       3.1   6.3e+02     264     268 ..     137     141 ..     109     172 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.3e-05
   TIGR01420 120 kkrGlilvtGptGsGKsttlAslidy 145
                 + r ++lvtG  G GK+tt Asli +
  MMETSP1061-20121228|1052_1   8 RTRPFVLVTGTPGTGKTTT-ASLIAE 32 
                 67789***********988.888865 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 3.1
   TIGR01420 264 sqrLv 268
                  q ++
  MMETSP1061-20121228|1052_1 137 MQVIL 141
                 11111 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00022     0.044      39      64 ..      13      38 ..       6      61 .. 0.80
   2 ?    0.1   0.0      0.39        81     243     318 ..      64     139 ..      54     178 .. 0.44

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00022
   TIGR02397 39 yLfsGprGvGKTsiArilAkalNCen 64
                 L +G+ G+GKT++A ++A+    ++
  MMETSP1061-20121228|1052_1 13 VLVTGTPGTGKTTTASLIAERTGMQH 38
                5899***************8765555 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.39
   TIGR02397 243 seekllelleailkkdleealklleellekgvdleklledliellrdlllvkktk.selleveeeeeeslkekaekl 318
                 +e+kll+ +e il+k +ee   ++ +++  ++ +e+ ++ l+ +lr+ + v     +    +e++++e+++ + +++
  MMETSP1061-20121228|1052_1  64 DEDKLLDAMEVILDKAAEEEKGIVVDFHVCEIFPERWFD-LVLCLRTSTNVLFDRlTARGYNEKKRSENMEAEIMQV 139
                 555555555555555555555555555544444444432.2222222222221111111122222222222222222 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.3   0.00017     0.035     341     361 ..      13      33 ..       8      43 .. 0.84
   2 ?   -3.2   0.0       1.5   3.1e+02      96     120 ..     148     172 ..     144     173 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00017
   TIGR01448 341 viltGGPGtGKtTvtkaiiel 361
                 v++tG PGtGKtT+   i+e 
  MMETSP1061-20121228|1052_1  13 VLVTGTPGTGKTTTASLIAER 33 
                 789***********9988875 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.5
   TIGR01448  96 lAqkivetfGeaaldvldddpekll 120
                  A+ iv+    +++d++d++ ++++
  MMETSP1061-20121228|1052_1 148 YAHEIVHEVPSNTIDDMDNNVSRVE 172
                 5889999999999999999877665 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00046     0.094      40      78 ..       7      45 ..       2      90 .. 0.84
   2 ?    0.7   0.0       0.3        62     234     264 ..     110     141 ..      61     146 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00046
   TIGR03015 40 sereGfilitGevGaGkttlvrnllkkleaekvvlaklv 78
                +++  f+l+tG  G+Gktt    + +++  ++v + +l+
  MMETSP1061-20121228|1052_1  7 ERTRPFVLVTGTPGTGKTTTASLIAERTGMQHVSVGELI 45
                56678**************99888888887777776665 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.3
   TIGR03015 234 rinilcdrlllsafleekkeis.keevkevia 264
                   n+l drl   ++ e+k++ + ++e+ +vi 
  MMETSP1061-20121228|1052_1 110 STNVLFDRLTARGYNEKKRSENmEAEIMQVIL 141
                 56999999999999999886441445666654 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0038      0.79       4      39 ..      13      48 ..      10      74 .. 0.83
   2 ?    3.1   0.0     0.069        14     116     174 ..     104     164 ..      89     170 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0038
   TIGR03263  4 ivisgpsGvGKstlvkklleekeelklsvSattRkp 39
                ++++g  G+GK+t ++ + e++   ++sv    R+ 
  MMETSP1061-20121228|1052_1 13 VLVTGTPGTGKTTTASLIAERTGMQHVSVGELIREL 48
                6799************99999999999998777765 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.069
   TIGR03263 116 ifilppsleeLeeRlkkRgtdseeviekRlekAkkel.ka.aeefdyvivNddlekaveel 174
                 +  l  s++ L +Rl++Rg +++++ e+  ++  + + ++  e++ + iv +  +++++++
  MMETSP1061-20121228|1052_1 104 VLCLRTSTNVLFDRLTARGYNEKKRSENMEAEIMQVIlEEaRESYAHEIVHEVPSNTIDDM 164
                 56677899999*******9988766554333333332133034477777777766666665 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   0.00027     0.056       2      32 ..      14      44 ..      12     179 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00027
   TIGR01313  2 vlmGvaGsGkstiakelakklgakfieGDdl 32
                ++ G+ G+Gk+t a+ +a++ g++++   +l
  MMETSP1061-20121228|1052_1 14 LVTGTPGTGKTTTASLIAERTGMQHVSVGEL 44
                578*******************999875444 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00042     0.085      77     109 ..       9      40 ..       2      42 .. 0.78
   2 ?   -4.0   0.1         7   1.4e+03       8      33 ..      56      81 ..      53      86 .. 0.63
   3 ?   -1.2   0.1      0.98     2e+02      37      60 ..     124     147 ..     109     175 .. 0.49

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00042
   TIGR00064  77 kkpnvillvGvNGvGKTttiaKlakllkkegkk 109
                 ++p+v l++G  G+GKTtt + +a+    ++ +
  MMETSP1061-20121228|1052_1   9 TRPFV-LVTGTPGTGKTTTASLIAERTGMQHVS 40 
                 55555.789************999988777665 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 7
   TIGR00064  8 eeLeevLleaDvglevvekiieelkk 33
                eeL +  l+ D  l+++e i+++  +
  MMETSP1061-20121228|1052_1 56 EELDTNVLDEDKLLDAMEVILDKAAE 81
                56666666666666666666666554 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.98
   TIGR00064  37 ekkvkeeeklkellkeelkealke 60 
                 ++k+++e+  +e+++  l+ea ++
  MMETSP1061-20121228|1052_1 124 NEKKRSENMEAEIMQVILEEARES 147
                 333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      275  (0.0670405); expected 82.0 (0.02)
Passed Vit filter:                        80  (0.0195027); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|1050_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1065.34
//
Query:       MMETSP1061-20121228|1048_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028    9.8   0.7      0.047    9.1   0.5    1.2  1  TIGR00917 2A060601: Niemann-Pick C type protein family


Domain annotation for each model (and alignments):
>> TIGR00917  2A060601: Niemann-Pick C type protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.5   1.1e-05     0.047     248     307 ..      10      68 ..       2      73 .. 0.49

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 1.1e-05
   TIGR00917 248 lylvlvlvflvgsllfsvrskkktsssselsevdaeisssendsdksesqrnekqsaave 307
                   l+l++v+ vg  l+  +++ ++s+  ++++ ++  ss++  s++s+s+ n+k +++ +
  MMETSP1061-20121228|1048_1  10 ARLALLVVVAVGVCLGRAHASEPDSQLRSSNSNSNSDSSNN-SSNNSSSNGNQKNQQQQQ 68 
                 45667777777777877777777777655544433333322.222333333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 1262.70
//
Query:       MMETSP1061-20121228|1057_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.10s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 850.60
//
Query:       MMETSP1061-20121228|1055_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-56  188.8   0.9    3.2e-56  188.2   0.6    1.3  1  TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family


Domain annotation for each model (and alignments):
>> TIGR03592  yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.2   0.6   7.8e-60   3.2e-56       1     190 [.     133     342 ..     133     343 .. 0.90

  Alignments for each domain:
  == domain 1    score: 188.2 bits;  conditional E-value: 7.8e-60
   TIGR03592   1 syglaIilltlvirllllplsakqiksmrkmqelqpklkeiqekykedrqklqqemmklykeegvnplaGcLPlLiQmPillaLyavl..lrsielrkapflwiedlsspdptveatialla....................iyilpvlaglttflqqklsapkpadpaqqkimlyimpvmflfmflffpaglllYwvvsnlftilqqliin 190
                 s+g++Ii+ltl i+ll++pl+ +q++s++kmq+lqp lke+q+ky+++++ ++q++++ly+e++vnplaGc+P ++Q+P++++Ly+++  l++ +   ++flw+ +l+ p + + + +++ a                    + ilpv++++++f++++l++pk+ +++qq ++l+++p+m+ +++l++p++l +Ywv++n++t++  lii+
  MMETSP1061-20121228|1055_1 133 SWGVSIIALTLAIKLLTFPLTKAQLESTQKMQALQPTLKEVQAKYQSNPEVMNQKIAELYQENNVNPLAGCIPSIVQIPVFIGLYRAVldLANENALDESFLWLPSLEGPTYGADP-SKGSAwlfdnwadgvpslgwadtsaFLILPVFLVISQFASMELMTPKE-QKDQQPAFLKVLPLMIGWFSLTVPSALSVYWVTNNIVTTATSLIIR 342
                 7*************************************************************************************995533333349*****9999999994444.444445889999999999988887666****************95555.5559************************************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1700.33
//
Query:       MMETSP1061-20121228|1054_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.11s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 2074.99
//
Query:       MMETSP1061-20121228|1059_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1621.10
//
Query:       MMETSP1061-20121228|1063_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.8  33.9      0.024   11.7  23.5    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7  23.5   5.9e-06     0.024     159     218 ..       2      67 .]       1      67 [] 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.9e-06
   TIGR02794 159 kkaEeeakakaaaeakkkaEae....eakkkaeaeak..KakaeaeaKakaeeakaKaeae.AkaKA 218
                 +kaEee+  + +aea++ aE+e    ea++kae+e+   +a+aeae+Ka++e  + +ae++ AkaKA
  MMETSP1061-20121228|1063_1   2 RKAEEER-LRLEAEAERNAEEErlplEAEQKAEEERLrlEAAAEAERKAEEERLRIEAEEAaAKAKA 67 
                 6889998.88888888888866788889999999986689999999999888555555532233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1061-20121228|1064_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       595  (0.145051); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1075.32
//
Query:       MMETSP1061-20121228|1065_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 777.27
//
Query:       MMETSP1061-20121228|1060_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.09s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1924.49
//
Query:       MMETSP1061-20121228|1067_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.12s 00:00:00.19 Elapsed: 00:00:00.35
# Mc/sec: 203.64
//
Query:       MMETSP1061-20121228|1061_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 476.86
//
Query:       MMETSP1061-20121228|1066_1  [L=941]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-17   59.7  35.8    1.1e-07   29.2   4.6    4.5  4  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    2.4e-13   48.2   7.0    1.8e-06   25.6   0.0    4.5  4  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    2.4e-10   38.4   2.2     0.0002   18.9   0.0    3.7  3  TIGR01659 sex-lethal: sex-lethal family splicing factor
    3.1e-08   30.4   0.0    3.1e-08   30.4   0.0    6.2  6  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.1e-06   25.8  11.4    2.9e-05   21.1   0.2    6.9  7  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   6.3e-05     0.051     216     258 ..      65     107 ..      61     136 .. 0.63
   2 !   29.2   4.6   1.3e-10   1.1e-07     169     276 ..     168     278 ..     149     295 .. 0.71
   3 !   20.2   0.0   7.4e-08   6.1e-05     180     306 ..     358     575 ..     338     580 .. 0.83
   4 !    6.4  11.1    0.0011      0.92     324     542 ..     694     934 ..     689     940 .. 0.46

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.3e-05
   TIGR01628 216 nrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgra 258
                 + ++g++f+ y ++edA  A  +ln+ ki++  t   l V  a
  MMETSP1061-20121228|1066_1  65 RSSKGYGFIKYLSKEDAIAARTDLNNSKIQMEGTTYTLKVELA 107
                 5567777777777777777777777777775556666666554 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 1.3e-10
   TIGR01628 169 ere.atkekkftNlYvKnlddsvtedklrelF.akfGeitSaivkkdeknrkrgfafvnyekaedAkkAveeln.gkkitlaatgkilyVgraqkraeReaelkakfeelk 276
                 e+e a+  kk   + ++nl     e+++r++  +++G+++ + v k ++n  +gf+fv +e++ dA+kAv++   + +   ++ +  l    +q++++ +++ k++ ee++
  MMETSP1061-20121228|1066_1 168 EQEqAALLKKKSRIILRNLSFYARENHIRKIMeSNYGRVSDVHVPKVKNNLHVGFCFVTFEDPKDAQKAVDSQTvDIQKRAVRMDWSLPKKLHQQQKQQQRQQKQQTEERS 278
                 333388889999999***************98468***********************************96431222222334444444444444444444444444433 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 7.4e-08
   TIGR01628 180 NlYvKnlddsvtedklrelFakfGeitSaivkkde.knrkrgfafvnyekaedAkkAveelngkkit...........................................................................................laatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelF 306
                  l+++nl+ + t + + +l  kfG+i  +   +d+  +  +g afv y k++ A++A++     +++                                                                                            a + +     ++q + +R+  lk k  +l+   +   + + l  +N+ + vd++ L++l 
  MMETSP1061-20121228|1066_1 358 CLFLRNLPFDATRHDVFQLLYKFGHIKGIYLVRDKdTGMLKGTAFVTYSKPQGARRAMDFAASSSSSssstgtpfvsqrqsaarsninhndnggdgdgdaiptrgsltlkgrtvlvdmavdketaatfdskeykiphadrrnlylqaearvessstdpGADNTDTWDDLPQQDQRKRQTALKDKTAKLQSP-IFFINPNRLSFRNMGKHVDEAGLQKLI 575
                 58999**********************99877776157789******************998888887888999999999999999999999999999999999999999999999999999999999999999999999999999999999888876444556666678888888888888888888877.666677788888888888888888875 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.0011
   TIGR01628 324 kSkgFGFVcfssqeeAnkAvtelhgkilngkPLyv....alAqrkeqRkarLqqqf........mqasaesrql........sigspvigaanisgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnps.......kpeapnalaqlaqqrlqaqgrrnlnnrnrnvlgnm..........nkkqqnaaskanqanvkaqpq...aqsknqmqqvvqdnnlpqkqatksnnkestltaaalasaspseqkqvL 542
                  S+gFGF  f++   A + ++el+ +   +k        a A +k+  k++ +++                            +++ ++ ++ +  + +a++q   + q++ +q ++q  + +  ++++  ++ +       +++++ +  q +++rl+ ++ ++ ++r+ +++++           +   ++  +k++ +++k ++     ++k+q++++  d    ++ ++++++ +s+l +a  ++a+ ++q++++
  MMETSP1061-20121228|1066_1 694 PSRGFGFAEFAHHAHALACLRELNNNPAYSKDYAAggkaAAALKKQSNKHHHNNKKgkssgfsaG--------DyrdeegkvRVPRLIVDFV-VENKVKAKKQAERRLQQQLNQSKQQLETLE--KKKTARKQAGddndapaTKKRGRGAIQREKKRLKRESGEEERERQAKLQKKAlyeakkelrrE---RAEEKKKKAEELKRKSVkppKKKKSQLKKIEDD----EEFESIVRSYQSKLESAREENAPRANQREAV 934
                 69***********************9999998764222267888888888888888444333331........1233222224444444444.333223333333333333333222222222..222222222211111223333444444444443333333333333333333333333332211...111111111111111111113333344444333....4444555577888888888888888887665 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   3.9e-06    0.0032      22      85 ..      29     112 ..      18     121 .. 0.67
   2 !    5.9   0.0    0.0021       1.7      16      80 ..     191     254 ..     176     264 .. 0.64
   3 !   25.6   0.0   2.2e-09   1.8e-06     265     327 ..     352     415 ..     255     422 .. 0.80
   4 ?    0.7   0.5     0.081        66     129     250 ..     694     826 ..     688     845 .. 0.53

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.9e-06
   TIGR01661  22 slftsiGeiescklvrdkvt................GqslGyGfvnyvreedaekavnslnGlrlq....nktikvsyarPssd 85 
                  +f+  G i     +  k                    s GyGf+ y+ +eda  a + ln  ++q    + t+kv +a  s++
  MMETSP1061-20121228|1066_1  29 DIFSQAGPIKKSSWINTKGAtapsgdgadyqrgipsRSSKGYGFIKYLSKEDAIAARTDLNNSKIQmegtTYTLKVELASASAA 112
                 555555555555555555444555555555555554568899999999999999999999999998444345889988887765 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0021
   TIGR01661  16 tqeeirslfts.iGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvsya 80 
                  ++ ir ++ s  G +  + + + k     +G+ fv + +++da+kav+s   + +q++++++ ++
  MMETSP1061-20121228|1066_1 191 RENHIRKIMESnYGRVSDVHVPKVKN-NLHVGFCFVTFEDPKDAQKAVDSQ-TVDIQKRAVRMDWS 254
                 55556655544246665555544443.346899999999999999999874.56677777766655 PP

  == domain 3    score: 25.6 bits;  conditional E-value: 2.2e-09
   TIGR01661 265 sdgagycifvynlspd.tdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalai 327
                 s g   c+f+ nl  d t + v+ql+ +fG ++ + ++rd +t   kG +fv+ +  + a  a+
  MMETSP1061-20121228|1066_1 352 SVGKKCCLFLRNLPFDaTRHDVFQLLYKFGHIKGIYLVRDKDTGMLKGTAFVTYSKPQGARRAM 415
                 4455679999999877356778899999999999999999999999999999998888887777 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.081
   TIGR01661 129 lskGvGfirfdkreeadraikalnGttPs.......gatepitvkfannPsssnskallsdleavl...naqltrvprstiltaaaiapl..hkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaad 250
                  s+G Gf  f ++  a   +++ln +          g +     k +n+  ++n+k+  s ++a     ++ ++rvpr +i++  +   +  +k+a++  +++l+ ++   + l ++  a+++a   +  +a++
  MMETSP1061-20121228|1066_1 694 PSRGFGFAEFAHHAHALACLRELNNNPAYskdyaagGKAAAALKKQSNKHHHNNKKGKSSGFSAGDyrdEEGKVRVPR-LIVDFVVENKVkaKKQAERRLQQQLNQSKQQLETLEKKKTARKQAGDDNDAPATK 826
                 589999999999999999999998653220111111222334456677777777777777776644111334556666.4443333333300333333333333333344455555566666665555555555 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.7   4.6e-06    0.0037     234     331 ..      67     166 ..      58     178 .. 0.75
   2 ?    1.0   0.0     0.068        56     145     179 ..     216     251 ..     202     276 .. 0.78
   3 !   18.9   0.0   2.5e-07    0.0002     192     252 ..     355     415 ..     277     461 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.6e-06
   TIGR01659 234 prgvafvrfnkreeaqeaisalnn..vipeggsqpltvrlaeehgkakaahymsklg.likygeygtgnggvaggsaanlpqppafmgannmvhrgrqkks 331
                  +g  f+++  +e+a  a + lnn  +  eg++  l v la     a +++  + +  + k  ++g gn +++ g+++n +q + ++  ++   rg +  +
  MMETSP1061-20121228|1066_1  67 SKGYGFIKYLSKEDAIAARTDLNNskIQMEGTTYTLKVELASASAAASSKQARAGFRtKSKDKDKGEGNDSGG-GGGGNDEQKQQHQKQQQQQQRGESPDE 166
                 57999******************954568************99888877776664430344556666665544.445566777778888888888887664 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.068
   TIGR01659 145 tgysfgyafvdfaseadsqraiksln.gitvrnkrl 179
                      g++fv f    d+q+a++s    i  r  r+
  MMETSP1061-20121228|1066_1 216 NNLHVGFCFVTFEDPKDAQKAVDSQTvDIQKRAVRM 251
                 556789***************987531455555444 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 2.5e-07
   TIGR01659 192 kdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeai 252
                 k   l++ nlp   t +++  ++ k+g+i    ++rdk tg  +g afv + k + a+ a+
  MMETSP1061-20121228|1066_1 355 KKCCLFLRNLPFDATRHDVFQLLYKFGHIKGIYLVRDKDTGMLKGTAFVTYSKPQGARRAM 415
                 4556788888888888888888888888888888888888888888888888888877775 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   1.7   6.8e-06    0.0055     336     482 ..      66     237 ..      60     241 .. 0.66
   2 ?  -15.3  16.0         5   4.1e+03      29     107 ..     262     338 ..     246     353 .. 0.52
   3 !   30.4   0.0   3.8e-11   3.1e-08     298     354 ..     358     414 ..     349     418 .. 0.91
   4 ?   -2.8   1.8      0.44   3.6e+02      74     119 ..     632     677 ..     613     682 .. 0.57
   5 ?   -1.8   0.1      0.21   1.8e+02     333     370 ..     691     728 ..     689     767 .. 0.73
   6 ?  -11.9  20.3         5   4.1e+03      11     104 ..     826     916 ..     779     938 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.8e-06
   TIGR01642 336 lsKGyaFceykdssvtdlAiaaLnG..iklgdk..kLnvkrAtvgakqatieken........................sdvlvtllakalsqsilqiGekptkvvqLtnlvlaed....llddeeYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAr 482
                 +sKGy+F++y    ++  A + Ln   i++ +   +L+v  A+  a  +  +k+                         +     ++++  +q++ q Ge p +  q + ++l+      l++ + Y+   +  k   s+yG + ++++P+     ++ + vG  F+ + d ++a+kA 
  MMETSP1061-20121228|1066_1  66 SSKGYGFIKYLSKEDAIAARTDLNNskIQMEGTtyTLKVELASASAAAS--SKQAragfrtkskdkdkgegndsgggggG-NDEQKQQHQKQQQQQQRGESPDEQEQEQAALLKKKsriiLRNLSFYARENHIRKIMESNYGRVSDVHVPKV----KNNLHVGFCFVTFEDPKDAQKAV 237
                 6899999999999999999999987223444441145555555544433..33334478888889999999999998843.44444555555555588888888888887777765444344555565544334445578999999999998....45566889999999999999986 PP

  == domain 2    score: -15.3 bits;  conditional E-value: 5
   TIGR01642  29 rdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkd 107
                 ++++++R+ +++  +rs   d+   d+ + d+ s  + + d    S    +++s + +s+s     s +++ +n+   +
  MMETSP1061-20121228|1066_1 262 QQKQQQRQQKQQTEERST-SDEIVADKTNDDDSSNGDSDSD-SDSSNGDSDSDSSNGDSDSDSDSDSDDSTDKNDAMEE 338
                 344455544444445553.4555666666555553333332.3333333455555555555555555555555544433 PP

  == domain 3    score: 30.4 bits;  conditional E-value: 3.8e-11
   TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlA 354
                  l++ nLP+d + + v +LL +FG +k+  l++d +tG  KG aF+ y  +  +  A
  MMETSP1061-20121228|1066_1 358 CLFLRNLPFDATRHDVFQLLYKFGHIKGIYLVRDKDTGMLKGTAFVTYSKPQGARRA 414
                 59**********************************************999877665 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 0.44
   TIGR01642  74 SRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkpp 119
                   + +++++ + + + ++++++ + +    kk+ +k +s +d  p+
  MMETSP1061-20121228|1066_1 632 EENDNDHDNDNDNDNDNDQEGGDDETTATTKKRRKKPKSIKDYVPS 677
                 2222244444444555555556666666666666666666666555 PP

  == domain 5    score: -1.8 bits;  conditional E-value: 0.21
   TIGR01642 333 atGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnv 370
                 a+  s+G++F e+     +   +  Ln    + k   +
  MMETSP1061-20121228|1066_1 691 ADAPSRGFGFAEFAHHAHALACLRELNNNPAYSKDYAA 728
                 566799*******9999988888888888887776654 PP

  == domain 6    score: -11.9 bits;  conditional E-value: 5
   TIGR01642  11 ksrerdrdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnek 104
                 k+r+r     +e++R ++ + +++R+R+ + ++++ ++ +++ +r r ++++  +  e+ +r+S +++++++ ++++++ +++ + ++ s ++k
  MMETSP1061-20121228|1066_1 826 KKRGRGA-IQREKKRLKRESGEEERERQAKLQKKALYEAKKELRRERAEEKK--KKAEELKRKSVKPPKKKKSQLKKIEDDEEFESIVRSYQSK 916
                 5555555.45666666677777777777777777777766654444433333..4455556666666555555555554444433333222222 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   6.0   2.7e-05     0.022     259     345 ..      66     162 ..      59     181 .. 0.58
   2 !   17.4   3.8   4.6e-07   0.00038     220     345 ..     179     303 ..     165     320 .. 0.78
   3 !   21.1   0.2   3.6e-08   2.9e-05     215     278 ..     351     415 ..     325     419 .. 0.81
   4 ?   -2.7   0.0      0.56   4.6e+02     284     357 ..     464     533 ..     458     563 .. 0.64
   5 ?   -7.1   5.5         5   4.1e+03      45      73 ..     634     661 ..     616     692 .. 0.45
   6 !    3.7   0.0    0.0064       5.3     260     282 ..     695     717 ..     687     720 .. 0.91
   7 ?  -10.5  20.5         5   4.1e+03      16     116 ..     807     901 ..     783     924 .. 0.48

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.7e-05
   TIGR01622 259 rskGyGFiqFsdaeeakeAleklNG..lelAGR..eikvglasDvtees....daslaskfeds..fdeseqsgldlnteereqldekldrddekgs 345
                  skGyGFi++   e a++A + lN   +++ G   ++kv las +   s     a    k++d+   ++++ +g +++ +e++q ++k +++++ g 
  MMETSP1061-20121228|1066_1  66 SSKGYGFIKYLSKEDAIAARTDLNNskIQMEGTtyTLKVELASASAAASskqaRAGFRTKSKDKdkGEGNDSGGGGGGNDEQKQQHQKQQQQQQRGE 162
                 59**********************8775566642279998877643332000023333333333223344444444555555555555555544444 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 4.6e-07
   TIGR01622 220 lkLYvGnlhfnitEqeLrqiFep.FGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnteereqldekldrddekgs 345
                  ++ + nl f   E+++r+i e+ +G++ +v ++k ++     G+ F++F+d + a++A      +++  R +++  +   + +++ + +++++ +  e+  ++ ++ +++++ +d    ++d ++ 
  MMETSP1061-20121228|1066_1 179 SRIILRNLSFYARENHIRKIMESnYGRVSDVHVPKVKNN-LHVGFCFVTFEDPKDAQKAVDS-QTVDIQKRAVRMDWSLPKKLHQQQKQQQRQQKQQTEERSTSDEIVADKTNDDDSSNGDSDSDSD 303
                 577778999************9659***********999.889****************987.579*********9987777777777788888875555566666777766666655444444443 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 3.6e-08
   TIGR01622 215 nsiad.lkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAl 278
                 +s+++   L++ nl f+ t +++ q+   FG+i+ + l +D++tG  kG  F+++s+ + a++A+
  MMETSP1061-20121228|1066_1 351 DSVGKkCCLFLRNLPFDATRHDVFQLLYKFGHIKGIYLVRDKDTGMLKGTAFVTYSKPQGARRAM 415
                 45554146999**************************************************9997 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 0.56
   TIGR01622 284 lelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnteereqldekldrddekgsgalaiagtdska 357
                 l l GR++ v +a D   e++a+ +sk    + + ++  l l++e+r +     d +  ++ +   +++ d++ 
  MMETSP1061-20121228|1066_1 464 LTLKGRTVLVDMAVDK--ETAATFDSKEYK-IPHADRRNLYLQAEARVESSS-TDPGADNTDTWDDLPQQDQRK 533
                 6788999999997764..444444666666.888888888888888766543.333333444445566555544 PP

  == domain 5    score: -7.1 bits;  conditional E-value: 5
   TIGR01622  45 rdrdfdrrdrdrdkyrdrerrsrkrrese 73 
                  d d+d+ d d d+  d+e+ + +   + 
  MMETSP1061-20121228|1066_1 634 NDNDHDN-DNDNDNDNDQEGGDDETTATT 661
                 1111111.111111111111111111111 PP

  == domain 6    score: 3.7 bits;  conditional E-value: 0.0064
   TIGR01622 260 skGyGFiqFsdaeeakeAleklN 282
                 s+G+GF +F +  +a + l +lN
  MMETSP1061-20121228|1066_1 695 SRGFGFAEFAHHAHALACLRELN 717
                 9*******************999 PP

  == domain 7    score: -10.5 bits;  conditional E-value: 5
   TIGR01622  16 eadrdrerdksrersRdrsrdRersr.skerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrekeerlkeelteee 116
                 e++++ +++++ + +    ++R r+  ++e+ r      +  +   +rer+ + +++  +e ++e +r+r +e+  k+k +e +r+  ++ ++ k +l++ e
  MMETSP1061-20121228|1066_1 807 EKKKTARKQAGDDNDAPATKKRGRGAiQREKKR-----LKRESGEEERERQAKLQKKALYEAKKELRRERAEEK--KKKAEELKRKSVKPPKKKKSQLKKIE 901
                 344444455555555555555555542332222.....112222333444444444555555555554443333..35555555555444222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       435  (0.106046); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.76u 0.14s 00:00:00.90 Elapsed: 00:00:00.56
# Mc/sec: 2217.89
//
Query:       MMETSP1061-20121228|1068_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 2819.77
//
Query:       MMETSP1061-20121228|1070_1  [L=1565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       383  (0.0933691); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.15s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 4050.25
//
Query:       MMETSP1061-20121228|1073_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 318.59
//
Query:       MMETSP1061-20121228|1072_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-18   65.5   0.0    1.3e-18   65.1   0.0    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.7e-11   42.1   0.0    2.3e-11   41.7   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    2.4e-10   38.0   0.0    3.1e-10   37.7   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.8e-07   28.2   0.0    2.8e-07   27.5   0.0    1.2  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    2.2e-07   27.5   0.0      3e-07   27.1   0.0    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    2.4e-06   25.3   0.0    4.6e-06   24.3   0.0    1.4  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    3.1e-05   20.7   0.0    4.3e-05   20.3   0.0    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    0.00014   19.4   0.2    0.00022   18.7   0.1    1.3  1  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain
  ------ inclusion threshold ------
      0.026   12.7   0.4        2.7    6.2   0.0    2.4  2  TIGR03831 YgiT_finger: YgiT-type zinc finger domain


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   2.9e-21   1.3e-18     209     294 ..     154     238 ..     146     242 .] 0.92

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 2.9e-21
   TIGR01622 209 lsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvg 294
                 ++g++p+  +  k+YvGn+ f+ tE++L +iF   G++    + +Dp tGr +G+GF++ ++ +   +A e+l Gl+l GR++ v 
  MMETSP1061-20121228|1072_1 154 KEGKHPKYSGSFKMYVGNISFQSTEDDLYEIFGEIGPVGEAIMVRDP-TGRPRGFGFVTMRNDDDGEKAVEQLDGLDLNGRTLSVR 238
                 467899999*****************************999999998.66********************************9985 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0     5e-14   2.3e-11     267     343 ..     162     238 ..     143     242 .] 0.87

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 5e-14
   TIGR01661 267 gagycifvynlspd.tdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvs 343
                 +  + ++v n+s + t++ +  +fg+ G v +  ++rd+ t + +G+gfv+m n d+  +a++ l+G  l +r+l v 
  MMETSP1061-20121228|1072_1 162 SGSFKMYVGNISFQsTEDDLYEIFGEIGPVGEAIMVRDP-TGRPRGFGFVTMRNDDDGEKAVEQLDGLDLNGRTLSVR 238
                 347899*****9652677888******************.99*********************************985 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   6.8e-13   3.1e-10     286     358 ..     165     237 ..     143     241 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 6.8e-13
   TIGR01628 286 vNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyv 358
                   +Yv N+  + ++ +L e F e+G +  a +++d++++ +gFGFV+  + ++  kAv++l+g  lng+ L v
  MMETSP1061-20121228|1072_1 165 FKMYVGNISFQSTEDDLYEIFGEIGPVGEAIMVRDPTGRPRGFGFVTMRNDDDGEKAVEQLDGLDLNGRTLSV 237
                 4688889988889999999999999998888888888999999999999999999999988888888888766 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   6.2e-10   2.8e-07      59     132 ..     165     237 ..     154     242 .] 0.88

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 6.2e-10
   TIGR01648  59 cevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGv 132
                   ++vG i     ed+l  +f ++G++ e  ++ d  G+ rG+ fvt  n ++ ++av +l+  ++ +Gr l v
  MMETSP1061-20121228|1072_1 165 FKMYVGNISFQSTEDDLYEIFGEIGPVGEAIMVRDPTGRPRGFGFVTMRNDDDGEKAVEQLDGLDL-NGRTLSV 237
                 479************************************************************997.7999987 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   6.6e-10     3e-07     294     371 ..     162     238 ..     135     241 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 6.6e-10
   TIGR01642 294 dsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvk 371
                  +  k+y+gn+ ++ ++d + e+  + G++    +++d  tG  +G++F+  ++  + + A++ L+G++l +++L v+
  MMETSP1061-20121228|1072_1 162 SGSFKMYVGNISFQSTEDDLYEIFGEIGPVGEAIMVRD-PTGRPRGFGFVTMRNDDDGEKAVEQLDGLDLNGRTLSVR 238
                 56679*************************99999999.59***********************************98 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0     1e-08   4.6e-06     195     258 ..     166     228 ..     148     240 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1e-08
   TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnv 258
                  +yv n++   t+d+l  ifg  g + +  ++rd  tg+prg  fv +   ++ ++a+  l+ +
  MMETSP1061-20121228|1072_1 166 KMYVGNISFQSTEDDLYEIFGEIGPVGEAIMVRD-PTGRPRGFGFVTMRNDDDGEKAVEQLDGL 228
                 4688888888888888888888887776666666.47888888888877777777777666554 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   9.4e-08   4.3e-05     110     180 ..     169     238 ..     160     242 .] 0.57

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 9.4e-08
   TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvgr 180
                 vG isf+  ed l + f   GP+    m  dp t++ +gf fv     +    a eq++g  l Gr l v r
  MMETSP1061-20121228|1072_1 169 VGNISFQSTEDDLYEIFGEIGPVGEAIMVRDP-TGRPRGFGFVTmRNDDDGEKAVEQLDGLDLNGRTLSV-R 238
                 56666666666666666666666666666665.5556666666544455556666666666666666655.3 PP

>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   4.8e-07   0.00022       3      36 ..      88     123 ..      86     125 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.8e-07
   TIGR02098   3 iqCPnCktsyrVddsqlgingg..kVRCgkCghvwt 36 
                 + C  C++ y+ + +  g+ +g  +  C+ Cgh+w 
  MMETSP1061-20121228|1072_1  88 ASCGQCGATYALTLEAMGPGNGgrRMECSVCGHTWF 123
                 68****************9766689**********5 PP

>> TIGR03831  YgiT_finger: YgiT-type zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.006       2.7      22      42 ..      78      97 ..      75      98 .. 0.87
   2 ?    4.2   0.1     0.025        12      33      44 ..     113     124 ..     111     126 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.006
   TIGR03831 22 geliviknvpawvCpqCGEey 42
                g++++++++ a  C+qCG  y
  MMETSP1061-20121228|1072_1 78 GKSLELPDTYA-SCGQCGATY 97
                78899999998.9*****887 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.025
   TIGR03831  33 wvCpqCGEeyld 44 
                 ++C++CG  ++ 
  MMETSP1061-20121228|1072_1 113 MECSVCGHTWFQ 124
                 58*****98885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 1183.01
//
Query:       MMETSP1061-20121228|1071_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-38  128.9  10.9    7.4e-35  117.3   7.9    2.2  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
     0.0027   14.7   0.3     0.0049   13.9   0.2    1.3  1  TIGR00732 dprA: DNA protecting protein DprA


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   7.9   3.6e-38   7.4e-35       3     107 ..      84     194 ..      82     195 .. 0.91
   2 !    9.2   0.0   0.00014      0.29      38      67 ..     227     256 ..     213     263 .. 0.87

  Alignments for each domain:
  == domain 1    score: 117.3 bits;  conditional E-value: 3.6e-38
   TIGR01100   3 gvlGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkek......ekyslykgfihlgaGlavGlsglaaGlaiGivGdag 107
                 g++G+a+a+vf+++G ayGta++g Gi ++g+  pel++k+iipvvmaG+++iyG++vav+++g+++        ++ys +++f hl+aGl++Gl++l +G+aiGi  dag
  MMETSP1061-20121228|1071_1  84 GFVGIASAVVFANIGGAYGTARAGQGIMSMGIRSPELLMKNIIPVVMAGVLGIYGMIVAVILNGKITPPgqgtryATYSQFNAFCHLAAGLCCGLTSLISGIAIGISADAG 194
                 89****************************************************************86422211134888999**************************98 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00014
   TIGR01100  38 elilksiipvvmaGiiaiyGlvvavliags 67 
                 +l + +++  v+a  i++yGl+ +++++++
  MMETSP1061-20121228|1071_1 227 NLFVATVLIQVFASNIGLYGLITSLILSQQ 256
                 67788888999***************9875 PP

>> TIGR00732  dprA: DNA protecting protein DprA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   2.4e-06    0.0049      51      97 ..     155     201 ..     154     205 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.4e-06
   TIGR00732  51 GtRaptkygervtrklakelakkgvtivSGlAlGiDgaahkaalkee 97 
                 GtR++t    ++  +la+ l+    +++SG+A+Gi ++a + a+ ++
  MMETSP1061-20121228|1071_1 155 GTRYATYSQFNAFCHLAAGLCCGLTSLISGIAIGISADAGTRAVGAQ 201
                 9*************************************999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1244.47
//
Query:       MMETSP1061-20121228|1074_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.9   0.0       0.02   11.6   0.0    1.1  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.8e-06      0.02     176     207 ..      50      81 ..      41      90 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.8e-06
   TIGR00115 176 felelgsgqfipgfeeqlvGmkaGeekeikvt 207
                 f++ +g g++i g +e+++Gm+ Ge + +++t
  MMETSP1061-20121228|1074_1  50 FKFSVGMGKVIRGWDEGVIGMSQGEIARLTCT 81 
                 899**********************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.09s 00:00:00.20 Elapsed: 00:00:00.17
# Mc/sec: 869.58
//
Query:       MMETSP1061-20121228|1075_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 934.92
//
Query:       MMETSP1061-20121228|1076_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 2095.73
//
Query:       MMETSP1061-20121228|1078_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 1076.54
//
Query:       MMETSP1061-20121228|1077_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.40
# Mc/sec: 488.36
//
Query:       MMETSP1061-20121228|1079_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   14.7  53.8     0.0083   11.7  37.3    1.9  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0061   12.1  51.4      0.008   11.7  35.7    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.091    8.3  38.5       0.13    7.8  26.7    1.1  1  TIGR02680 TIGR02680: TIGR02680 family protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7  37.3     6e-06    0.0083     675     915 ..      49     288 ..      17     302 .. 0.51

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6e-06
   TIGR02168 675 lerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel...keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkel 915
                    +k+++ l++ei+e++e+++ ++k+l e++++l+++e++++kl+++l+e  +  ++  + +++l++    + e+ +++++++e +++  + ++ +++e+eee+    e++++ ++ ++e++++++++  +++al+  ++  +e +++++   + l + eke++ ++ + + ++++ ++l+e+ie++e+  e ++  +++++ ++e+l+++ + +ee+ +++r+e++e +ee++e e++ ++ 
  MMETSP1061-20121228|1079_1  49 KRYRKRLQSLQTEIDEVNEDATTTRKKLWETQDKLKSAEDQIRKLENHLNEVLELREKDMETVKTLRAANSDCVEMESRAREAMEVFKKCYKRAQLKIKEQEEETallREQNNRAARDRSEANADTANAGVNKSALEYIKSISEEKEKRLK---KMLFETEKEVDLWKSRYKVASKRCSNLQEHIEAAEHPSE-ATVHMNKQRIKIEQLEEALKVAEERQERQRREYREEKEEQDEQEERDDDH 288
                 3445566666666666666666666666666666666666666666666665444444444444444444444444444444444444433333333333333330013333333333333344444444444444333333333333333...344455666666666666666666666666664444433.33335666666666666666666666666666666666666655555444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7  35.7   5.9e-06     0.008     663     915 ..      34     287 ..      29     295 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.9e-06
   TIGR02169 663 ersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsrie.arleeieaelnklelekelleeeiqel.qeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiek 915
                 ++++ + + +e +  +r r+rl++L+ e +++ ++ +  +k+l e ++kl+ ae +i+++e++l+++ e +ek  e ++ l++  s + e    ++e ++  ++  ++ + k+++ +e+ + l ++ ++   +++e++++  ++ v++   + +++i +e +k+  +  ++ e+  +l +++ + + ++ ++++++ie+ +    e   ++++++ ++++Lee lk  ++  e+ + e+re +++++e+e++ ++
  MMETSP1061-20121228|1079_1  34 RKKAVMAEYQEDAYRKRYRKRLQSLQTEIDEVNEDATTTRKKLWETQDKLKSAEDQIRKLENHLNEVLELREKDMETVKTLRAANSDCVEMESRAREAMEVFKKCYKRAQLKIKEQEEETALLREQNNRAARDRSEANADTANAGVNKSAlEYIKSISEEKEKRLKKMLFETEKEVDLwKSRYKVASKRCSNLQEHIEAAEH-PSEATVHMNKQRIKIEQLEEALKVAEERQERQRREYREEKEEQDEQEERDDD 287
                 45566667778888899**************************************************************************************************************************999998876551567777666665553333333333344144445555555666666776666.67777889999*********99988888888889999999999888876555 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  26.7   9.4e-05      0.13     251     490 ..      37     284 ..       7     305 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 9.4e-05
   TIGR02680 251 nflqryreYartalrrr.atelrsAqkqldelsrdlgeakdelekareeereldartealeaeaealrtrleaLqeseayqkakeleraraeaealqkaaaeaekavaeaesreeeerrrldeeaarleeaeeelraareelareAeraglseahtaeplaalaaqelqelga...............laldarr.qdadrviaerselvallrrrvdeadeaeaesaaaraardeldeeaeqaaaraeladeavde 490
                  ++++y+e    a r+r  ++l+s q+++de+++d+   +++l +++++++++++++++le++++       +L+e+  ++ +k+l  a+++  + +++a ea +  ++  +r++ + +  +ee a l+e++++++  r e++++ ++ag+++   +      +++e +   +               ++++++r ++++++i+  ++  + +    ++  + e+ + a + a ++ + ++ + ++ +e++de++++
  MMETSP1061-20121228|1079_1  37 AVMAEYQE---DAYRKRyRKRLQSLQTEIDEVNEDATTTRKKLWETQDKLKSAEDQIRKLENHLNE----VLELREK-DMETVKTLRAANSDCVEMESRAREAMEVFKKCYKRAQLKIKEQEEETALLREQNNRAARDRSEANADTANAGVNKSALEYIKSISEEKEKRLK-KmlfetekevdlwksrYKVASKRcSNLQEHIEAAEHPSEATVHMNKQRIKIEQLEEALKVAEERQERQRREYREEKEEQDEQEER 284
                 44555554...4444441347888889999999999999999999999999998888888877643....3346655.48999********************************************************************99999888877766654444.3466788888888888555554433444444444333333222222222233333333333333333333333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       733  (0.178693); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.57u 0.14s 00:00:00.71 Elapsed: 00:00:00.81
# Mc/sec: 549.14
//
Query:       MMETSP1061-20121228|1080_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-18   63.2   0.0    5.6e-18   62.9   0.0    1.1  1  TIGR00988 hip: integration host factor, beta subunit
    1.1e-17   62.0   0.0    1.4e-17   61.8   0.0    1.1  1  TIGR00987 himA: integration host factor, alpha subunit
    5.9e-05   20.9   0.0    7.1e-05   20.6   0.0    1.1  1  TIGR01201 HU_rel: putative DNA-binding protein


Domain annotation for each model (and alignments):
>> TIGR00988  hip: integration host factor, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   4.1e-21   5.6e-18       3      92 ..      47     135 ..      45     137 .] 0.95

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 4.1e-21
   TIGR00988   3 kselieriateqshlsakdvekavktlleelaealarGdrieirGfGsfslkkraartGrnpktGesveldekyvpffkpGkelrdrvne 92 
                 k e+++++a+e +  ++ d e+a++ +l  ++++la G+++++ GfG+f  ++r+ar Grnp+tGe++e+       f + k l+d++n+
  MMETSP1061-20121228|1080_1  47 KKEFVAKMAEELGY-TKTDAEQALNCVLGLVSDTLADGNKVNFPGFGTFEPRYRKARRGRNPRTGEDIEIAASCGAGFSAAKALKDKLNG 135
                 7899****999886.6789*********************************************************************97 PP

>> TIGR00987  himA: integration host factor, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.0   9.9e-21   1.4e-17       1      92 [.      44     135 ..      44     137 .] 0.96

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 9.9e-21
   TIGR00987   1 altkaelsealfeelGlskreakelvelvleeirdalergeqvklsgfGnfdlrdkrqrpGrnpktGeeipitarrvvtfrpgqklkdrvee 92 
                 +l k e+  ++ eelG +k +a++ ++ vl  ++d+l  g++v + gfG+f+ r ++ r Grnp+tGe+i i+a     f  ++ lkd+++ 
  MMETSP1061-20121228|1080_1  44 TLRKKEFVAKMAEELGYTKTDAEQALNCVLGLVSDTLADGNKVNFPGFGTFEPRYRKARRGRNPRTGEDIEIAASCGAGFSAAKALKDKLNG 135
                 678999999*******************************************************************************9875 PP

>> TIGR01201  HU_rel: putative DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.2e-08   7.1e-05      23      84 ..      37      98 ..      27     119 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.2e-08
   TIGR01201 23 pqtvksgsvdleeiaeliseeStlspGdVkgildrlakvlrreLasGktvklgeiGsFrlsl 84
                p+t + +++  +e++ +++ee + ++ d   +l+ +  ++++ La+G++v+  + G+F +  
  MMETSP1061-20121228|1080_1 37 PETSSPETLRKKEFVAKMAEELGYTKTDAEQALNCVLGLVSDTLADGNKVNFPGFGTFEPRY 98
                67888999999***********************************************8754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 547.95
//
Query:       MMETSP1061-20121228|1083_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1169.05
//
Query:       MMETSP1061-20121228|1081_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 1326.49
//
Query:       MMETSP1061-20121228|1082_1  [L=769]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-25   88.4   0.1      2e-22   77.8   0.0    2.4  2  TIGR00233 trpS: tryptophan--tRNA ligase
    1.1e-17   62.0   0.0      4e-17   60.2   0.0    1.7  1  TIGR00234 tyrS: tyrosine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00233  trpS: tryptophan--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.0   9.7e-26     2e-22       3     234 ..      83     315 ..      81     339 .. 0.80
   2 !    8.1   0.0   0.00016      0.32     261     316 ..     367     419 ..     357     428 .. 0.77

  Alignments for each domain:
  == domain 1    score: 77.8 bits;  conditional E-value: 9.7e-26
   TIGR00233   3 krvltGiqpsGklhlGnylg..airtkveq.qeevelfiqvaDlhaitvkkl.tdeealrkaveelvadilAvGlDpekttiflqs.evpehselavl....lskkvtlgelkritqfkdksqeenvsiGllsypvlqaAdiLlyqadlVPvgeDqkqhleltRdlaerfnkkfkkvfklPelliskffarlmglqdkKMSkSdpnsaIfLtdepkeikkKikkaatdsgretleeerekp 234
                 + ++ G++psG++h+   +   +  +k+ +   +   ++ vaD  a++ +k+  d + +++  + l+  + A G+D+ ++++   s e++ h +  +     ++++ ++ ++k++ q+ ++  e +++ + + yp++q  di+  +ad+   g Dq +   l+Rd  +  +   k   ++P +l +++  +l+  q+ KMSkSdp+sa+f++d+p++++ Ki++a+   ++e   ee+ ++
  MMETSP1061-20121228|1082_1  83 FNLYDGFEPSGRMHIAQGVFkaMNVNKCTFpGTNSTFIFWVADWFALMNDKMgGDLDKIKIVGKYLLEVWKAAGMDLTNVQFKWCSeEFTTHADKYWPnmldIARRFNVTRIKKCCQIMGRL-EGSLTSAQVLYPLMQCTDIFFLKADICQLGVDQRKVNMLARDYCDAAK--IK---NKPIILSHHMLFGLKAGQE-KMSKSDPDSAVFMEDTPEDVERKIMSAYCPTKEEEKAEEK-EG 315
                 67899**********7655410334455557778888999***********62567788888888899999********9996555156666665553222289999**************9.888****************************************88877..33...89********888888777.**************************88877775333333.33 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00016
   TIGR00233 261 ekeksgkllygelKkalievlqeflkelqekreevaeeeldkileagakkaretae 316
                 +k  +g+++  elK+ li++l+e+l+++++ +   ++e+++++l++  ++ +++a 
  MMETSP1061-20121228|1082_1 367 DKFLAGEMSEEELKRGLIDALNELLEPVRQHF--TNDETAKDLLNK-VRQYKKEAP 419
                 5667899999*******************999..777788888887.334454544 PP

>> TIGR00234  tyrS: tyrosine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0     2e-20     4e-17      34     287 ..      81     317 ..      46     329 .. 0.78

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 2e-20
   TIGR00234  34 eklklylGvdPtaqslHlGhlv..plkkLr.dfqqaGhevvvligdataligdpsgkkevrkvleeeevqenaesikkqlarfldfdkgklkfvnnsewlkklnyldfirdlgkifsvnrmlardafssRleenglslsefiYpllQayDfvaLdkddlqlGGsDQwgNilagidLirrnlpskkqfgltvpLltkadGekmG.kseggavsldesspydfyqkvintpdelvkkilklftflgleeieklveeksps 287
                 + ++ly G++P++ ++H+   v   +++ +  f     + ++ ++d  al++d+ g +    + + ++v ++  +  k+  + l +   + k +  +   +  +y   + d+++ f v r+++  ++  Rle   l+ ++++Ypl+Q  D+ +L++d +ql G+DQ    ++  +L+r +  ++k  ++++ L      +++G k++++++s +++   d+  ++ +tp+++ +ki++++++ ++ee ++ +e +  +
  MMETSP1061-20121228|1082_1  81 TGFNLYDGFEPSG-RMHIAQGVfkAMNVNKcTFPGTNSTFIFWVADWFALMNDKMGGD----LDKIKIVGKYLLEVWKAAGMDLTN--VQFKWCSEEFTTHADKYWPNMLDIARRFNVTRIKKCCQIMGRLEGS-LTSAQVLYPLMQCTDIFFLKADICQL-GVDQ----RKVNMLARDYCDAAKIKNKPIILSHH---MLFGlKAGQEKMSKSDP---DSAVFMEDTPEDVERKIMSAYCPTKEEEKAEEKEGE--E 317
                 45899********.****76552134443325666666778889*********98753....334445677888888888887774..3466666555556678999**************************7.*********************99999.5***....************96677777888778...****4566799**9999...**************************9888544443..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.64
# Mc/sec: 1585.93
//
Query:       MMETSP1061-20121228|1086_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 935.92
//
Query:       MMETSP1061-20121228|1087_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.76
# Mc/sec: 889.19
//
Query:       MMETSP1061-20121228|1088_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 1087.91
//
Query:       MMETSP1061-20121228|1089_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 1104.80
//
Query:       MMETSP1061-20121228|1084_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 1209.90
//
Query:       MMETSP1061-20121228|1085_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-17   61.8  11.9    2.3e-14   51.4   5.0    2.1  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
  ------ inclusion threshold ------
      0.098   11.1   4.7        2.4    6.7   0.0    3.2  3  TIGR03322 alt_F1F0_F0_C: alternate F1F0 ATPase, F0 subunit C


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   5.0   1.1e-17   2.3e-14       5     100 ..      11     100 ..       7     104 .. 0.88
   2 !   13.1   0.1   9.1e-06     0.019      29      65 ..     135     171 ..     127     174 .. 0.87

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 1.1e-17
   TIGR01100   5 lGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkekekyslykgfihlgaGlavGlsglaaGlai 100
                 lG+a ++ +s+ G+a  +a+     a+ +v  ++  ++++ip+v+aG++aiyG++++ l+ + ++++  +s ++g+  l+aGl+vGl+ la+G+ +
  MMETSP1061-20121228|1085_1  11 LGCALSIFLSSTGSAIASAQG----ATYAVRATNGYIRALIPIVIAGVLAIYGIIISYLLISRMDDD--MSEINGYKFLSAGLSVGLACLASGYGM 100
                 788888888888888777765....5678999999***************************99988..6899********************865 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 9.1e-06
   TIGR01100  29 iaalgvlrpelilksiipvvmaGiiaiyGlvvavlia 65 
                    l v   +l  k+++ ++    ia+yGl+va+l+ 
  MMETSP1061-20121228|1085_1 135 QGVLDVYSDDLFRKTVLSLIYLEAIALYGLIVALLLI 171
                 4567889999***********************9985 PP

>> TIGR03322  alt_F1F0_F0_C: alternate F1F0 ATPase, F0 subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   1.9     0.066   1.4e+02      30      76 ..      23      67 ..       7      70 .. 0.64
   2 ?    1.4   0.0     0.051     1e+02       9      36 ..      80     107 ..      72     118 .. 0.73
   3 ?    6.7   0.0    0.0012       2.4      52      77 ..     147     172 ..     138     176 .] 0.79

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.066
   TIGR03322 30 GravaqalealaqqpdasatitrtlfvGlamiesvaiycfvvsmili 76
                G a+a+a  a      a++   r+l + + +   +aiy  ++s +li
  MMETSP1061-20121228|1085_1 23 GSAIASAQGAT-YAVRATNGYIRAL-IPIVIAGVLAIYGIIISYLLI 67
                55555554443.2334555555665.456666778999999999988 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.051
   TIGR03322   9 asivtaGltiaiGsiGpalgeGravaqa 36 
                    ++aGl++++ ++    g  + ++q 
  MMETSP1061-20121228|1085_1  80 YKFLSAGLSVGLACLASGYGMSKFIQQL 107
                 5678999999999998888877777665 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0012
   TIGR03322  52 rtlfvGlamiesvaiycfvvsmilif 77 
                 r   + l  +e++a+y ++v+++li 
  MMETSP1061-20121228|1085_1 147 RKTVLSLIYLEAIALYGLIVALLLIG 172
                 66667888999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1161.50
//
Query:       MMETSP1061-20121228|1092_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0032   13.2   6.5     0.0034   13.1   4.5    1.0  1  TIGR00618 sbcc: exonuclease SbcC
  ------ inclusion threshold ------
      0.012   11.1   6.0      0.013   11.0   4.2    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.012   11.2   6.2      0.012   11.1   4.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.019   13.2   0.5      0.033   12.4   0.3    1.5  1  TIGR02559 HrpB7: type III secretion protein HrpB7
      0.049   11.8   2.7      0.052   11.7   1.9    1.1  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   4.5   4.2e-06    0.0034     673     737 ..       6      71 ..       1      74 [. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.2e-06
   TIGR00618 673 keklesr.qaklkklqskkeqltyikeeLeqkqellreletkveelsrefeelenasssakselea 737
                 +e le++  + +++ q + e+l+y   +Leqk++ l +l ++   l+++ +e+en+  +++s+le+
  MMETSP1061-20121228|1092_1   6 EEGLEEQlAKSKEEIQALQESLSYTSATLEQKETVLVQLREEKTGLNKHLKEMENINTAKISTLEG 71 
                 3334444044556789999*****************999999999******************986 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.2   1.6e-05     0.013     843     897 ..       6      60 ..       2      73 .. 0.49

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.6e-05
   TIGR02169 843 ieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereelea 897
                  e leeq ++ ++ei++l+ +l  +++ le++e  + +L+ee+ +L+k  +e+e+
  MMETSP1061-20121228|1092_1   6 EEGLEEQLAKSKEEIQALQESLSYTSATLEQKETVLVQLREEKTGLNKHLKEMEN 60 
                 3334444444444444444444444444444444444444444444444444443 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   4.3   1.5e-05     0.012     859     908 ..       9      58 ..       1      74 [. 0.21

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.5e-05
   TIGR02168 859 leaeieeleeeleeleeeleellkekasleealaelreeleelseelrel 908
                 le+++++ +ee+++l+e l   ++  +++e+ l +lree++ l++ l+e+
  MMETSP1061-20121228|1092_1   9 LEEQLAKSKEEIQALQESLSYTSATLEQKETVLVQLREEKTGLNKHLKEM 58 
                 11111111111111111111111111111111111111111111111111 PP

>> TIGR02559  HrpB7: type III secretion protein HrpB7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.3   4.1e-05     0.033      20      67 ..      16      66 ..       2      74 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.1e-05
   TIGR02559 20 lraeleelraaleeadaelaekes...qaeakedrldrhaarlddlatgta 67
                 ++e+++l+  l    a l++ke    q++  ++ l++h++ ++++ t++ 
  MMETSP1061-20121228|1092_1 16 SKEEIQALQESLSYTSATLEQKETvlvQLREEKTGLNKHLKEMENINTAKI 66
                467777777777777777777775333677888899999999999999954 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   1.9   6.4e-05     0.052      32      76 ..      10      54 ..       2      72 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.4e-05
   TIGR03495 32 ekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeal 76
                e++l ++++e+++ +  l+  +a+++++e   +qLr+++  +++ 
  MMETSP1061-20121228|1092_1 10 EEQLAKSKEEIQALQESLSYTSATLEQKETVLVQLREEKTGLNKH 54
                233444455555555555555555555555555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       352  (0.0858118); expected 82.0 (0.02)
Passed bias filter:                      250  (0.0609459); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 309.35
//
Query:       MMETSP1061-20121228|1091_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.44
# Mc/sec: 809.93
//
Query:       MMETSP1061-20121228|1093_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.9    3.1  11.0         11    2.9   7.6    1.0  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.6    0.0026        11      88     186 ..      22     117 ..       4     119 .] 0.60

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0026
   TIGR01347  88 skeekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaakaakaaenaatrseeRvkmtRlrqr 186
                 ++++  e+   + e++ke  ek++ l++ + k ak ++  + a+++ +k++r++    +++ +    ++++aa+++++ +++ +tr+ +    tR+r +
  MMETSP1061-20121228|1093_1  22 EEKKGGEALLVQDEQYKEXGEKDERLQDEQHKAAKRKSAYKTAIQDDEKDERLQGGKKDERLQD---EQHKAAKRTSAYYKTSNTRRRKGQAPTRRRFK 117
                 2233345566777778888888899999999999999999999999888888765444444333...23333333334444445666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.08s 00:00:00.22 Elapsed: 00:00:00.36
# Mc/sec: 436.30
//
Query:       MMETSP1061-20121228|1094_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 1406.63
//
Query:       MMETSP1061-20121228|1090_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-146  485.1   0.0   2.9e-146  484.8   0.0    1.0  1  TIGR00169 leuB: 3-isopropylmalate dehydrogenase
    4.4e-76  254.0   0.0    5.5e-76  253.7   0.0    1.0  1  TIGR02088 LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
    2.5e-61  205.3   0.0    3.4e-61  204.9   0.0    1.1  1  TIGR02089 TTC: tartrate dehydrogenase
    5.4e-45  151.8   0.0      2e-44  149.9   0.0    1.7  1  TIGR00175 mito_nad_idh: isocitrate dehydrogenase, NAD-dependent
    4.2e-43  145.9   0.0    1.4e-42  144.2   0.0    1.6  1  TIGR02924 ICDH_alpha: isocitrate dehydrogenase
    4.8e-34  115.7   0.0    8.6e-27   91.8   0.0    2.4  2  TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent


Domain annotation for each model (and alignments):
>> TIGR00169  leuB: 3-isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  484.8   0.0  4.2e-149  2.9e-146       2     347 ..      58     406 ..      57     408 .. 0.97

  Alignments for each domain:
  == domain 1    score: 484.8 bits;  conditional E-value: 4.2e-149
   TIGR00169   2 iavLpGDgiGpevvaealkvLkaveerfelklefeealiGGaaidatgePlpeetlkackeadavLlgavGGpkWdnlprdvrPekgLLklrkeldlfanLrPaklfksLeklsplkeeivkgvDlvvvreLtgGiYfGepkereeaeeekkaldtekYtkeeieriarvafelarkrrkkvtsvDkanvLessrlWrktveeiak.eyPdvelehlyiDnaamqLvksPeqldvvvtsnlfGDilsDeasvitGslGlLPsaslsskglalfepvhgsapdiagkgianpiaailsaalllryslnleeaaeaieaavkkvleegkrtedla..seattavstkevee 347
                 i++L GDgiGpe+ ++   vL+a+  +++++le +ealiGGaaida+++P+p+etl++c+++d+vLl+++GG+kWdn+pr+ rPe+gLLk+r +++lfanLrPak+ ++L+++s+lk+e+v+gvD++vvreLtg +YfG pk+++e + e+ +++ + Y+++ei+riarva  +a kr  k++svDkanvL++s+lWr++v+++++ ++  vel+h+y+DnaamqL++ P+q+d++vt+n+fGDilsDeas+++GslG+LPsas++++g ++fep hgsapdiag++ anp+a+ilsaa++l+y l+ +e+a+++e+av+ vle+g rt+d++  +++++ v++ e+++
  MMETSP1061-20121228|1090_1  58 ITLLTGDGIGPEISTATKGVLDALCAKQGFSLELREALIGGAAIDAVNDPFPQETLDQCQASDSVLLACIGGYKWDNNPRELRPETGLLKMRSSMGLFANLRPAKVLPQLIDASTLKREVVEGVDVMVVRELTGDVYFGTPKGIDEVDGERVGYNNMIYKESEIDRIARVAGDVASKRTGKLCSVDKANVLDVSQLWREVVTDVITkDFGGVELSHMYVDNAAMQLIRWPKQFDTIVTGNIFGDILSDEASMLVGSLGMLPSASIGESGPGVFEPCHGSAPDIAGEDKANPLAMILSAAMMLQYDLDRPEEAKMLEDAVEAVLEQGFRTPDIKieGDGCKLVGCVEMGQ 406
                 89************************************************************************************************************************************************999******************************************************9877***************************************************************************************************************************9862256788888888776 PP

>> TIGR02088  LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.7   0.0   8.1e-79   5.5e-76       2     310 ..      59     389 ..      58     404 .. 0.87

  Alignments for each domain:
  == domain 1    score: 253.7 bits;  conditional E-value: 8.1e-79
   TIGR02088   2 avieGdGiGkevieaairiln...ekldlelelieleaGlealkkyGealseetlekikkadailfGavtetaa.psyksv.....ivtlrkeldlyanvrpvkslekiedlea......knldivivrentedlyagfeie....isdtlaiairvitrkgserivkfalelakkrkrkvtivhkanvlkvtdglflevvreiakek.g.vevedllvdsaaiklvkdPekfdvivttnvfGdilsdlaaalvGslGlaPsaniGdkk.alfePvhGsapdiaGkGianPlaailsvamlldy.lgekekaklveeavekilkekkvtpdl 310
                 +++ GdGiG+e+  a++ +l+    k + +lel e   G +a++ + +++++etl++++ +d +l   ++  +  ++ +++     ++++r  ++l+an+rp+k l+++ d ++      +++d+++vre t d+y g+  +     ++ + ++  +  +   +ri+++a ++a kr  k+  v kanvl v++ l++evv ++  +  g ve++ ++vd aa++l++ P++fd ivt n+fGdilsd+a++lvGslG+ Psa iG++   +feP hGsapdiaG   anPla+ils+am+l+y l + e+ak++e+ave +l+++  tpd+
  MMETSP1061-20121228|1090_1  59 TLLTGDGIGPEISTATKGVLDalcAKQGFSLELREALIGGAAIDAVNDPFPQETLDQCQASDSVLLACIGGYKWdNNPRELrpetgLLKMRSSMGLFANLRPAKVLPQLIDASTlkrevvEGVDVMVVRELTGDVYFGTPKGidevDGERVGYNNMIYKESEIDRIARVAGDVASKRTGKLCSVDKANVLDVSQ-LWREVVTDVITKDfGgVELSHMYVDNAAMQLIRWPKQFDTIVTGNIFGDILSDEASMLVGSLGMLPSASIGESGpGVFEPCHGSAPDIAGEDKANPLAMILSAAMMLQYdLDRPEEAKMLEDAVEAVLEQGFRTPDI 389
                 6789****************9777788999***************************************987764333332222339********************766555445556699**************9875551111445566777777788889****************************65.*******987654235********************************************************8538********************************944556**********************8 PP

>> TIGR02089  TTC: tartrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.9   0.0     5e-64   3.4e-61       3     337 ..      55     391 ..      53     411 .. 0.93

  Alignments for each domain:
  == domain 1    score: 204.9 bits;  conditional E-value: 5e-64
   TIGR02089   3 eykiaaiPgdGiGkevvaaalkvleavakksGdlklefeefdwscdyykehGkmmPedgleklkkfdaiflGavGapa..evPdhislwGlllkirrefeqyinlrPakllpGv..ksplknrgpkdldllvvrenseGeysevGGrifrgedeevaienaiftrkgverilrfafelaqkrrkkltsvtksnaikhsmvfwdevvkev.akeypdvevdkqhidalaarlvlkPetldvivasnlfgdilsdlgaalagslGvapsaninpegkfPsmfePvhGsapdiagkgianPiaaiwtaalmleh.lGekeaaaklldalervtaegiktrdvgG 337
                  y i+++ gdGiG+e+ +a++ vl+a+ +k+G ++le  e   + +         P++ l++ +  d+++l  +G  +  + P ++     llk+r ++ +++nlrPak+lp +   s lk +  + +d++vvre +   y ++   i + + e v+ +n i+    ++ri r a ++a kr +kl+sv k+n    s  +w evv++v +k++ +ve +++++d  a +l+  P+++d+iv+ n+fgdilsd ++ l+gslG+ psa i  +g  P +feP hGsapdiag++ anP+a i +aa+ml++ l   e a+ l da+e v+++g +t+d+  
  MMETSP1061-20121228|1090_1  55 AYTITLLTGDGIGPEISTATKGVLDALCAKQG-FSLELREALIGGAAIDAVNDPFPQETLDQCQASDSVLLACIGGYKwdNNPRELRPETGLLKMRSSMGLFANLRPAKVLPQLidASTLKREVVEGVDVMVVRELTGDVYFGTPKGIDEVDGERVGYNNMIYKESEIDRIARVAGDVASKRTGKLCSVDKANVLDVS-QLWREVVTDViTKDFGGVELSHMYVDNAAMQLIRWPKQFDTIVTGNIFGDILSDEASMLVGSLGMLPSASIGESG--PGVFEPCHGSAPDIAGEDKANPLAMILSAAMMLQYdLDRPEEAKMLEDAVEAVLEQGFRTPDIKI 391
                 699*****************************.*****************************************96542288999999999*********************9744588999999*******************9999999999***************************************99988.5788887765289**********************************************************8776..*********************************973666677777889**************964 PP

>> TIGR00175  mito_nad_idh: isocitrate dehydrogenase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   0.0   2.9e-47     2e-44       3     318 ..      55     390 ..      53     403 .. 0.78

  Alignments for each domain:
  == domain 1    score: 149.9 bits;  conditional E-value: 2.9e-47
   TIGR00175   3 kltvtlipGdGiGpeiskavkeifkaakvPief....eeidvs.ieteekksealeeavesi...kknkvaLkGale..tpiekgehkslnvalrkeldlyanvvhiksleGl......ktrh.edvdlviirenteGeysgleh..evvpG..vveslkvitkekseriakyafeyarkngrkkvtavhkanimklaDGLflevakevakk.ypdikleelivDntclqlvskPeqfdvlvmpnlYGnilsnlaaglvgGaGlvpganvGrdyvvfeegvrntakdiagkdianPtalllssvlmLnh.lglkeyadrikkavletikegkvrtkDlg 318
                  +t+tl+ GdGiGpeis+a k +++a ++   f     e  +     +  +   ++e+++     +   +a  G  +   +  +   ++  +++r +++l+an++++k l+ l      k +  e vd++++re t   y g       v+G  v     +  +++ +ria+ a + a k    k+ +v kan++ ++  L++ev+++v +k +  ++l++++vDn+++ql+  P+qfd +v+ n++G+ils+ a+ lvg +G++p+a++G++   ++e ++++a+diag+d+anP a++ls+++mL++ l+  e a+ +++av +++++g  rt+D+ 
  MMETSP1061-20121228|1090_1  55 AYTITLLTGDGIGPEISTATKGVLDALCAKQGFslelREALIGgAAIDAVNDPFPQETLDQCqasDSVLLACIGGYKwdNNPRELRPETGLLKMRSSMGLFANLRPAKVLPQLidastlKREVvEGVDVMVVRELTGDVYFGTPKgiDEVDGerVGYNNMIYKESEIDRIARVAGDVASKRT-GKLCSVDKANVLDVSQ-LWREVVTDVITKdFGGVELSHMYVDNAAMQLIRWPKQFDTIVTGNIFGDILSDEASMLVGSLGMLPSASIGESGPGVFEPCHGSAPDIAGEDKANPLAMILSAAMMLQYdLDRPEEAKMLEDAVEAVLEQG-FRTPDIK 390
                 689**********************98876444211145555443333333444555554441003334455565552244445555666799***************9986522211122224789*********99998765511346663254555566777889**********9876.57999*********96.99**999986544**********************************************************************************************9659*************9998876.7888875 PP

>> TIGR02924  ICDH_alpha: isocitrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.0     2e-45   1.4e-42       2     338 ..      57     413 ..      56     418 .. 0.82

  Alignments for each domain:
  == domain 1    score: 144.2 bits;  conditional E-value: 2e-45
   TIGR02924   2 pitvayGdGiGPeimeavllilke....aeaeieietieiGeklykkewssGisesswesikrtkvllkaPittpqG.gGhksln.....vtlrkklglyanirPcvsyhpvietk......ypkldivivreneedlytGieyrl....tkdtyectkvitrsgsekiiryafeyakknnrkkvtclikdnilkltdGifhkifdkiakeyPdiesehyivdiGaarvakkPekfdvivtenlyGdilsdvvaeisGsvGlaGsaniGeey.amfeavhGsaPdiagknianPsGllnaaiqmlvy.igqkdiaqliynaflktledGvhtadiykekkskkkvgtkefaeavvenlg 338
                  it+  GdGiGPei +a+  +l +     + ++e+  + iG +  +   +    +++ ++ + +  +l a i   +  +  + l      + +r ++gl+an+rP++    +i+         + +d+++vre   d+y G+   +     + +   + +  +s  ++i r a + a k+   k+  + k n+l ++    + + d i+k++  +e  h+ vd  a ++   P++fd ivt n++Gdilsd ++ + Gs+G+  sa iGe++  +fe  hGsaPdiag++ anP  ++ +a +ml y +++ + a+++++a    le+G  t di  e    k vg  e+ +av e + 
  MMETSP1061-20121228|1090_1  57 TITLLTGDGIGPEISTATKGVLDAlcakQGFSLELREALIGGAAID-AVNDPFPQETLDQCQASDSVLLACIGGYKWdNNPRELRpetglLKMRSSMGLFANLRPAKVLPQLIDAStlkrevVEGVDVMVVRELTGDVYFGTPKGIdevdGERVGYNNMIYKESEIDRIARVAGDVASKRTG-KLCSVDKANVLDVSQLWREVVTDVITKDFGGVELSHMYVDNAAMQLIRWPKQFDTIVTGNIFGDILSDEASMLVGSLGMLPSASIGESGpGVFEPCHGSAPDIAGEDKANPLAMILSAAMMLQYdLDRPEEAKMLEDAVEAVLEQGFRTPDIKIEGDGCKLVGCVEMGQAVAEAVA 413
                 59999**********9987777652200334577777779988765.45667889999**999999998988765431333444322222789**************998888765111122467999***********87655441110455556677888999************98775.577889********98777788999**************************************************************98469*******************9998888888877699*******************************************998765 PP

>> TIGR00183  prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   4.3e-08   2.9e-05      28     163 ..      57     197 ..      44     210 .. 0.76
   2 !   91.8   0.0   1.3e-29   8.6e-27     276     415 ..     270     411 ..     243     413 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 4.3e-08
   TIGR00183  28 iipyieGdGiGvdivpaaikvldaavekaykgekkiawfevyaGekayelygeeeylpedtldaikeykvaikGplt.tpvGgGirsln.....valrqeldlyvclrpvryykgv..pspvke..pekvdlvifrentediyaGi 163
                  i  + GdGiG +i +a++ vlda  +k +     +   e  +G  a++ ++  + +p++tld  +     +   +      +  r l      + +r  + l+++lrp + ++     s +k+   e vd+++ re t d+y G 
  MMETSP1061-20121228|1090_1  57 TITLLTGDGIGPEISTATKGVLDALCAKQG---FSLELREALIGGAAIDAVN--DPFPQETLDQCQASDSVLLACIGgYKWDNNPRELRpetglLKMRSSMGLFANLRPAKVLPQLidASTLKRevVEGVDVMVVRELTGDVYFGT 197
                 68899*********************9988...678999**********999..789*****99886543322222201222333444322233689**************998642267777623589**************995 PP

  == domain 2    score: 91.8 bits;  conditional E-value: 1.3e-29
   TIGR00183 276 vvkdriadallqqiltrpdeydviatmnlnGdylsdalaalvGGlGiapGanigdev.aifeathGtapkyaGldkvnpgsvilsgvlllef.lGwkeaadlivkalekaiaskevtydlarlmdgakevkcsefaeaiven 415
                  +  +  d+   q++  p+++d i t n+ Gd lsd ++ lvG lG+ p a ig++  ++fe+ hG+ap  aG dk np ++ils++++l++ l   e a+++  a+e+ +++   t d++   dg k v+c e+++a+ e 
  MMETSP1061-20121228|1090_1 270 ELSHMYVDNAAMQLIRWPKQFDTIVTGNIFGDILSDEASMLVGSLGMLPSASIGESGpGVFEPCHGSAPDIAGEDKANPLAMILSAAMMLQYdLDRPEEAKMLEDAVEAVLEQGFRTPDIKIEGDGCKLVGCVEMGQAVAEA 411
                 55667789999999999*************************************97537********************************988999*****************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.51
# Mc/sec: 1086.97
//
Query:       MMETSP1061-20121228|1095_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0076   12.7   0.0     0.0098   12.4   0.0    1.1  1  TIGR01787 squalene_cyclas: squalene/oxidosqualene cyclases


Domain annotation for each model (and alignments):
>> TIGR01787  squalene_cyclas: squalene/oxidosqualene cyclases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.4e-06    0.0098     195     279 ..     187     272 ..     151     290 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.4e-06
   TIGR01787 195 evakedlyfphskldealkalek.lvepllrrkalrkkalqklleriaaddsiGaiekalallalkvldgpsdeafrkhlerikdf 279
                 ++++   +   s +++a+ a+++    +   +k+++  a+  +++  ++ ds+G i++++a+   +  d ++++ + +++++ + +
  MMETSP1061-20121228|1095_1 187 NMPQATPFSATSDIQQAVAATLSnEIDESNSNKMAKATATTDAYNSYQYSDSLGHIQQVIATKLSNEIDESNSNKIAEATATTDVY 272
                 44455555555669999988877555556799999**************************9999999999998888877766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 1328.41
//
Query:       MMETSP1061-20121228|1096_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 747.94
//
Query:       MMETSP1061-20121228|1097_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-06   25.1   5.3     0.0017   15.7   0.0    2.8  3  TIGR02840 spore_YtaF: putative sporulation protein YtaF
    5.6e-06   24.1   0.1    1.2e-05   22.9   0.0    1.6  1  TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family
  ------ inclusion threshold ------
      0.018   12.8   2.6       0.03   12.0   0.1    2.3  3  TIGR00779 cad: cadmium resistance transporter family protein


Domain annotation for each model (and alignments):
>> TIGR02840  spore_YtaF: putative sporulation protein YtaF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.35   4.7e+02     182     204 ..      21      44 ..      11      46 .. 0.63
   2 !   15.7   0.0   1.2e-06    0.0017      37      86 ..     172     222 ..     153     263 .. 0.78
   3 !   10.1   1.0   6.6e-05      0.09      42      80 ..     308     346 ..     297     348 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.35
   TIGR02840 182 aklsiikkls.llsgilLillgll 204
                  + +++++   +l +i+L+ l+ll
  MMETSP1061-20121228|1097_1  21 RSRRYLHRSPsILRSIVLLCLALL 44 
                 444444444449999999999986 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.2e-06
   TIGR02840  37 avisa.llllvsmllGkllakilpvkvaeilgaiiLiaiGlwiilqalrkk 86 
                 av+s  +++++s ++G ++ k++pvk ++ilg+++ + +G+ ++l+a   +
  MMETSP1061-20121228|1097_1 172 AVASLyVMTVLSSMMGIVMPKLVPVKYTHILGGMLFLYFGVKLLLDAKGMD 222
                 444431456778889*************************99998874433 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 6.6e-05
   TIGR02840  42 llllvsmllGkllakilpvkvaeilgaiiLiaiGlwiil 80 
                 +++ +++l G++la+ ++ k  +i+g+ii +a+G+ +++
  MMETSP1061-20121228|1097_1 308 MCTGMAVLGGRMLAAKISEKTVSIFGGIIFLAFGIHSVF 346
                 567788899*************************99875 PP

>> TIGR03717  R_switched_YjbE: integral membrane protein, YjbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   8.9e-09   1.2e-05      24      92 ..     156     228 ..     140     259 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 8.9e-09
   TIGR03717  24 arkLpkkqrkkailvGvaaAvvlRilla....lvavllLeipllkliggllLlwiavkllleeeeeeeeeeka 92 
                 a+ L  +q++ a+++G++a + +  +l     +v+ +l+ +++ +++gg+l+l+ +vklll+++  +++++++
  MMETSP1061-20121228|1097_1 156 AAVLSMRQKRSAVFLGAVASLYVMTVLSsmmgIVMPKLVPVKYTHILGGMLFLYFGVKLLLDAKGMDSSQVSE 228
                 5678999**********99876655554111166778999**********************99888876543 PP

>> TIGR00779  cad: cadmium resistance transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.2e-05      0.03      22      78 ..     163     220 ..     145     237 .. 0.71
   2 ?   -2.5   0.0      0.62   8.5e+02      76     110 ..     243     279 ..     241     300 .. 0.59
   3 ?   -0.0   0.1      0.11   1.5e+02      23      71 ..     294     343 ..     282     348 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.2e-05
   TIGR00779  22 kevkdiyiGqylGsiilivvsllvafgvv.lipekwvlGllGlipiylGikvaikgee 78 
                 ++   +++G      ++ v s ++  ++  l+p k+   l G++ +y+G+k+++  + 
  MMETSP1061-20121228|1097_1 163 QKRSAVFLGAVASLYVMTVLSSMMGIVMPkLVPVKYTHILGGMLFLYFGVKLLLDAKG 220
                 445567788777766665555555555544*******9999***********987653 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.62
   TIGR00779  76 geededer.ai.lsllesGklnklvl.tvalitlasga 110
                 +e de+ + a+  +++ +G ++++ + +  l  la+ +
  MMETSP1061-20121228|1097_1 243 DERDEESQqAVtSNSIRKG-FSEVAMqSFTLTFLAEWG 279
                 5555554413313455667.776644144444455544 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.11
   TIGR00779  23 evkdiyiGqylGsiilivvsllvafgvv.lipekwvlGllGlipiylGik 71 
                 ++  + +G  +G ++  ++++l+   +   i ek v  + G+i + +Gi+
  MMETSP1061-20121228|1097_1 294 NPYGVTLGGCIGHTMCTGMAVLGGRMLAaKISEKTVSIFGGIIFLAFGIH 343
                 55567788889999999999998888876899998877777888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 1212.22
//
Query:       MMETSP1061-20121228|1106_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 469.29
//
Query:       MMETSP1061-20121228|1103_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1063.91
//
Query:       MMETSP1061-20121228|1104_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-35  120.2   0.0      4e-35  119.3   0.0    1.3  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
      1e-26   91.5   0.1    1.8e-26   90.6   0.0    1.3  2  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    7.8e-23   78.7   0.0    1.2e-22   78.1   0.0    1.2  1  TIGR02079 THD1: threonine dehydratase
    1.4e-22   78.1   0.0      3e-22   77.0   0.0    1.4  2  TIGR00260 thrC: threonine synthase
    7.7e-21   72.2   0.9    1.1e-20   71.7   0.6    1.4  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    1.8e-16   57.9   0.1      3e-15   53.9   0.0    2.1  2  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    8.7e-16   55.9   0.0    2.6e-15   54.4   0.0    1.6  2  TIGR01136 cysKM: cysteine synthases
    1.8e-13   48.2   0.0    1.2e-12   45.5   0.0    1.8  2  TIGR01139 cysK: cysteine synthase A
      2e-11   41.8   0.1      5e-11   40.5   0.0    1.6  2  TIGR01138 cysM: cysteine synthase B
      1e-09   35.4   0.5    4.8e-09   33.2   0.3    1.8  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    7.5e-09   32.9   0.1    5.8e-07   26.7   0.1    2.7  1  TIGR00263 trpB: tryptophan synthase, beta subunit
    2.7e-07   27.3   0.0    4.1e-07   26.7   0.0    1.3  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
    6.4e-07   26.3   0.1    0.00021   18.0   0.0    2.8  3  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
    7.5e-07   26.1   0.0    1.1e-06   25.5   0.0    1.3  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
      5e-05   20.6   0.1    0.00013   19.2   0.0    1.6  1  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
    7.3e-05   19.5   0.0    0.00025   17.8   0.0    1.8  2  TIGR03844 cysteate_syn: cysteate synthase
    0.00061   16.5   0.0     0.0013   15.4   0.0    1.5  2  TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.3   0.0   1.7e-37     4e-35       1     289 [.      94     408 ..      94     412 .. 0.80

  Alignments for each domain:
  == domain 1    score: 119.3 bits;  conditional E-value: 1.7e-37
   TIGR01127   1 tpleksstlsditgaevylklenlqktGsfkirGalnkiaklseeekkrGvvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLhGadfDeayklaee.laeeegrvfvhafdDefviaGqGtlgleil.....edlpdvdtvivPvGGGGLisGvas.avkklnpevkviGveaeaapslveslkegkikave...........svktiaDGiavkkpgdltfeivkelvDevv..avdeeeiakaillLlerakivaegaGavgvaavleekvdvk......gkkvavvvsGGn.idln 289
                 tpl++s+ ls ++g  vylkl++lq  Gsfk rG  +  a+  +e+ +  v+++s Gn    va      g++  +++Pe + +  + + +s+Ga+v +hG +++ a kla+e ++ + ++ +v ++d++ + +G+ tl  ei+     e l++   ++v vGGGGL+ Gv     ++++   k++  e+e+a  +++s+++    + +             ++ia  +   +  +++ e ++ +   +   a ++ee  +a +++   +++++e+a  +++a v +e++ +       +  ++v v+GG  +d+ 
  MMETSP1061-20121228|1104_1  94 TPLIRSQPLSALVGKPVYLKLDALQASGSFKDRGMAHLCATFRQEG-TTEVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGANVTIHGVNWNAADKLARErVESNPSAGYVSPYDNPLLWTGHSTLVDEIAiqleaEGLGEPGAIVVSVGGGGLLCGVLEgCSRRKLTSTKIVTSETEGAACFQKSYDASGDDDNNngnnngpitlpGIDSIATSLGATSCTPVALERARSHCGGFSanACTDEEAVDACVRFAKDHRMLVEPACGAALAVVYSERLRKScletvgDGPIVVEVCGGSgVDID 408
                 9*********************************988777776666.556************************************************************975267777899******************99962222255678899**************872568899********************8754332220111111111145667777777777788888888888877522689******************************9988763311111123466667777435555 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.6   0.0   7.4e-29   1.8e-26      16     214 ..      92     295 ..      83     302 .. 0.89
   2 ?   -3.7   0.0       2.9   6.9e+02     263     282 ..     357     376 ..     347     401 .. 0.74

  Alignments for each domain:
  == domain 1    score: 90.6 bits;  conditional E-value: 7.4e-29
   TIGR01124  16 vetplekaaklserlknrvllkredlqpvfsfklrGaynkmaqlsaeqkakGviaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGenydeakakale.laqekgltfiapfddplviaGqGtvalellrqvee....dldavfvpvGGGGliaGvaa.lvkqllpeikvigveaedsaalkqaleaG 214
                  +tpl +++ ls+ ++  v+lk + lq   sfk rG     a + +e  ++ vi++s Gn    va  +  lG+   +++pett  + +  + + G++v +hG n++ a + a+e ++ + +  +++p+d+pl+ +G  t+  e+  q e     +  a+ v+vGGGGl+ Gv     ++ l   k+++ e+e +a+++++ +a 
  MMETSP1061-20121228|1104_1  92 AVTPLIRSQPLSALVGKPVYLKLDALQASGSFKDRGMAHLCATFRQEG-TTEVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGANVTIHGVNWNAADKLARErVESNPSAGYVSPYDNPLLWTGHSTLVDEIAIQLEAeglgEPGAIVVSVGGGGLLCGVLEgCSRRKLTSTKIVTSETEGAACFQKSYDAS 295
                 58**********************************888777777665.567*************************************************************98345566899********************988876512223579**************872456677899****************9984 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.9
   TIGR01124 263 dvfedtravlepaGalalaG 282
                    +d r ++epa   ala 
  MMETSP1061-20121228|1104_1 357 RFAKDHRMLVEPACGAALAV 376
                 44578899999998777775 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   4.8e-25   1.2e-22      12     278 ..      89     369 ..      79     417 .. 0.75

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 4.8e-25
   TIGR02079  12 evvketPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdeelekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkaveke.gktlipPfddkdiieGqgtvaveileqleee...kidlvlvpvGGGGlisGv.tsylkekskktkiigvePeGapslkaslka...........gevvtldkidkfvdGaavkrvGdlnfkalkkvvd..evtlveegavcstildlynkegivaePa 278
                  ++  tPl +++ ls+  +  +ylk + lq   s+k rG  +   +  +e+    v+ +s Gn    va     lg+   v +P tt    + k+   G    +v + G  +++a   a++ ve++  + ++ P+d++ +  G +t+  ei  qle e   ++  ++v+vGGGGl +Gv  +  ++k + tki+  e eGa+++++s+ a           + ++tl  id             ++ + +++     +  + ++++   + + + +++ +++ePa
  MMETSP1061-20121228|1104_1  89 ALFAVTPLIRSQPLSALVGKPVYLKLDALQASGSFKDRGMAHLCATFRQEGT-TEVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGA---NVTIHGVNWNAADKLARERVESNpSAGYVSPYDNPLLWTGHSTLVDEIAIQLEAEglgEPGAIVVSVGGGGLLCGVlEGCSRRKLTSTKIVTSETEGAACFQKSYDAsgdddnnngnnNGPITLPGIDSIATSLGATSCTPVALERARSHCGgfSANACTDEEAVDACVRFAKDHRMLVEPA 369
                 56789**********************************9887777777665.567899***************************************97...6899****************9873578*************************98878899***************83567788999****************99864222221111114467777777666655555555555554444433233333333333445556666666666666 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         1   2.5e+02     193     263 ..      19      85 ..      18      93 .. 0.69
   2 !   77.0   0.0   1.3e-24     3e-22      22     307 ..      93     377 ..      74     404 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1
   TIGR00260 193 nfgailkGflekkelglpieklaiaaegaadivrrflksgdlepkedkeTlstAmdignpsnveralelar 263
                 +f+ ++  fl   ++ lp    ++ +    ++v + l++ + +  ++ +  s ++  + +++   a +la+
  MMETSP1061-20121228|1104_1  19 LFTTLTTSFLTTTRV-LP-FVAGFHSR--VPTVSALLRNSKSMSPSTSASASASLSASASVSTAAAADLAE 85 
                 577777788888887.88.44444443..388888888887777777778888888888888777777766 PP

  == domain 2    score: 77.0 bits;  conditional E-value: 1.3e-24
   TIGR00260  22 stelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgnetvlcAtsGdtgaaaaealagkanvkvvvLyPkgkispv.keklvtalaenakvlaikGdFDdaqdlvkeifedkeklklnsvNsinparieaqktyafeiveqlgk...espdkvvvpvp.sgnfgailkGflekkelglpieklaiaaegaadivrrflksg.dlepkedk...eTl....stAmdignpsnveralelarrslgnledlkesvsdeeileaikklaeeegyllephtavavaal 307
                 +t+l+rs+ l++ vg+  +y+k +++  +++FKDrg   +a l + ++++g + v+ ++ G+ g a+a    g  +++v v++P+  + p+   kl   l  n+++ ++  ++ +a +l +e +e ++ ++ +s    np    +  t++ ei+ ql+     +p  +vv+v+ +g++  +l+G    k +    +    ++egaa + + +  sg d+ +  +     Tl    s A   g  s  + ale ar+  g + +   +++dee ++a  + a+ + +l+ep+ ++a+a++
  MMETSP1061-20121228|1104_1  93 VTPLIRSQPLSALVGK-PVYLKLDALQASGSFKDRG---MAHLCATFRQEGTTEVISSSGGNAGLAVA-TVGGLLGLDVSVIVPET-TKPLvIAKL-ESLGANVTIHGV--NWNAADKLARERVESNPSAGYVSPY-DNPLLWTGHSTLVDEIAIQLEAeglGEPGAIVVSVGgGGLLCGVLEGCSRRKLT-ST-KIVTSETEGAACFQKSYDASGdDDNNNGNNngpITLpgidSIATSLGATSCTPVALERARSHCGGFSAN--ACTDEEAVDACVRFAKDHRMLVEPACGAALAVV 377
                 5778888888888887.*******************...*****************************.****************9.788857777.67999**99999..688***********99998888876.69****************999966679*********9**********5555554.44.8889999**9999999999995444443434556876666778889999*****************999..***************************999986 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.6   4.6e-23   1.1e-20      18     215 ..      92     295 ..      74     411 .. 0.81

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 4.6e-23
   TIGR02991  18 eetplveseslsellGvpvllklesrqttGsfklrGatnavlslsdaeraaGvvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGrsqddaqe.everlvkerGlvmlppfdhadivaGqGtlglevveq.....vpdlalvlvplsGGGlasGvavavkalkpatrviGvsmerGaa.mkaslkaG 215
                   tpl++s+ ls l+G+pv lkl++ q+ Gsfk rG      ++ + e ++ v+++s Gn G a+a      g+ + + + e      + ++ +lGa+v i G   + a +   er+  +     + p+d++ + +G  tl  e+  q     + +   ++v + GGGl +Gv      +k +   i  s   Gaa +++s +a 
  MMETSP1061-20121228|1104_1  92 AVTPLIRSQPLSALVGKPVYLKLDALQASGSFKDRGMAHLCATFRQ-EGTTEVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGANVTIHGVNWNAADKlARERVESNPSAGYVSPYDNPLLWTGHSTLVDEIAIQleaegLGEPGAIVVSVGGGGLLCGVLEGCSRRKLTSTKIVTSETEGAAcFQKSYDAS 295
                 67**********************************8877666655.56778**********************999988888888899**************999988872458888999999*****************999875511111567789**************99998888776666666666665256777775 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   1.2e-17     3e-15       8     209 ..      94     290 ..      88     294 .. 0.85
   2 ?    1.4   0.1      0.12        29     239     271 ..     346     378 ..     322     405 .. 0.79

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 1.2e-17
   TIGR03945   8 tplvkleklfedekvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaRlarvrellaeipdavwlNQYaneanaeahyettaeeileelk.....evdylfvgvsttGtlaGvarrl.rekspevkvvavDavGSvifgg 209
                 tpl++ + l +     +++Kl+ l ++gS Kdr   +l  +  +eg+    t +i Ss Gn ++a+a+v   lGl++ ++v   +++  ++ l++lga+v++   + ++++      +  re +++ p a ++  Y n+  ++ h +t ++ei+ +l+     e+  ++v+v+ +G l Gv +   r+k  ++k+v  +++G   f +
  MMETSP1061-20121228|1104_1  94 TPLIRSQPLSALVGKPVYLKLDALQASGSFKDRGMAHLCATFRQEGT----TEVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGANVTIHGVNWNAAD------KLARERVESNPSAGYVSPYDNPLLWTGH-STLVDEIAIQLEaeglgEPGAIVVSVGGGGLLCGVLEGCsRRKLTSTKIVTSETEGAACFQK 290
                 6777777777777778********************99999999885....88***********************************************98655555444......45678899********************.799999987765321226889**************99772566789***********99986 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.12
   TIGR03945 239 vseletvaacrelleregilaGgSsGtvvaavk 271
                  +++e+v ac + ++ + +l+    G+++a v 
  MMETSP1061-20121228|1104_1 346 CTDEEAVDACVRFAKDHRMLVEPACGAALAVVY 378
                 6899******************99999998773 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   1.1e-17   2.6e-15       6     202 ..      92     286 ..      87     302 .. 0.86
   2 ?   -1.4   0.0       1.1   2.6e+02     237     267 ..     346     376 ..     342     390 .. 0.85

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 1.1e-17
   TIGR01136   6 GntPlvrln.lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgk....idafvagvGtgGtitGvgrvl.kekkpnvkivavePaesp 202
                   tPl+r + ls+ +   v++Kl+  + sgS KdR  +++     ++g+    +++i +  GN G+a+A v+   g+ + +++pet+     + l+++Ga++ +       ++a + a+e +e++p+++ +++ ++Np  ++ H  t   Ei  +++ +      a+v +vG gG + Gv +   ++k ++ kiv+ e + ++
  MMETSP1061-20121228|1104_1  92 AVTPLIRSQpLSALVGKPVYLKLDALQASGSFKDRGMAHLCATFRQEGT----TEVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGANVTIHGV--NWNAADKLARERVESNPSAG-YVSPYDNPLLWTGHS-TLVDEIAIQLEAEglgePGAIVVSVGGGGLLCGVLEGCsRRKLTSTKIVTSETEGAA 286
                 57***************************************99999996....679*********************************************987654..578999***********888.99***********97.56788888887655333689**************88661445558888887766655 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.1
   TIGR01136 237 vededaietarrlakeegilvGiSsGaavaa 267
                  +de+a++   r+ak+  +lv  + Gaa+a 
  MMETSP1061-20121228|1104_1 346 CTDEEAVDACVRFAKDHRMLVEPACGAALAV 376
                 5789999999999999999999999999875 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0     5e-15   1.2e-12       5     206 ..      91     290 ..      87     317 .. 0.87
   2 ?    0.4   0.0      0.28        68     237     267 ..     346     376 ..     341     388 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 5e-15
   TIGR01139   5 iGntPlvrLn.laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnkylllkqfenpanpeihrkttapeilkdldgk....ldafvagvGtGGtitGvgevlkekkp.dikvvavePaespvlsg 206
                    tPl+r + l + +   v++kl+ l+ s+s kdr  +++     +eg+    ++++ +  Gn G+a+a v+   g+ + +++pet      + l+++Ga++ +   +   ++a + a+e ve++p++   ++ ++np   + h  t   ei+ +l+ +      a+v +vG GG + Gv e   + k  + k+v++e + ++ +++
  MMETSP1061-20121228|1104_1  91 FAVTPLIRSQpLSALVGKPVYLKLDALQASGSFKDRGMAHLCATFRQEGT----TEVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGANVTIHGVN--WNAADKLARERVESNPSAG-YVSPYDNPLLWTGHS-TLVDEIAIQLEAEglgePGAIVVSVGGGGLLCGVLEGCSRRKLtSTKIVTSETEGAACFQK 290
                 5679*****9999999999***********************99999986....579*********************************************9887655..567778899*******876.799******999985.77899999999776444679**************997765554499999999988887766 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.28
   TIGR01139 237 vsdeeaietarrlakeeGilvGissGaavaa 267
                  +deea++ + r ak+  +lv  + Gaa+a 
  MMETSP1061-20121228|1104_1 346 CTDEEAVDACVRFAKDHRMLVEPACGAALAV 376
                 689************************9875 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   2.1e-13     5e-11       7     180 ..      92     263 ..      87     282 .. 0.83
   2 ?   -2.3   0.0       2.2   5.3e+02     232     261 ..     348     377 ..     345     399 .. 0.76

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 2.1e-13
   TIGR01138   7 GntplvrlkrllpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrkgeek.lldqfnnpdnpkahytst...GieiwqqtkGrithfvsslGttGtimGv 180
                   tpl+r + l++  ++ v++kl++   +Gs kdr    +     + G       +i ++ Gn+G+a+a v+ l+G+ v +++p+ +     a l++ Ga++ +       + a +lare v+  +   ++  ++np  +  h t      i++  +  G     v s+G +G + Gv
  MMETSP1061-20121228|1104_1  92 AVTPLIRSQPLSALVGKPVYLKLDALQASGSFKDRGMAHLCATFRQEGT----TEVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGANVTIHG--VNWNAADKLARERVESNPSAgYVSPYDNPLLWTGHSTLVdeiAIQLEAEGLGEPGAIVVSVGGGGLLCGV 263
                 679********************************98777766665554....35999******************************************987754..45689999****999998877*************976541113333444557788999999999988887 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.2
   TIGR01138 232 qedaediarelakkegifvGvssGgavaaa 261
                  e+a d   ++ak + ++v  + G+a+a +
  MMETSP1061-20121228|1104_1 348 DEEAVDACVRFAKDHRMLVEPACGAALAVV 377
                 567888888888888888888888888754 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.3     2e-11   4.8e-09      11     280 ..      93     377 ..      87     401 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 2e-11
   TIGR01137  11 ntPlvrlnkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdtliePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeipgavildqyanasnPlahydttgeeileqleg....kldalvagvGtGGtitGiarklk.ekedkvrivGadPeGsil......aepeelnkt..ektdykveGi.......G.ydfiPtvldrkvvd....eiiktddkesfkmarrlikeegllvgGssGsavvaa 280
                  tPl+r + +s  +   v+ k++ + a Gs kdr   ++     ++G+      +i    Gn+G+ +a v+   G  + +++Pe      +  l++lGa++      +++++ +    +a+  ++  p+a  +  y+n+     h  t  +ei  qle     +  a+v +vG GG + G+       k  + +iv  + eG+        a +++ n+   ++ +  + Gi       G     P +l+r        +  +  d+e+ + + r++k+  +lv  ++G+a++++
  MMETSP1061-20121228|1104_1  93 VTPLIRSQPLSALVGKPVYLKLDALQASGSFKDRGMAHLCATFRQEGTT----EVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGANVTI--HGVNWNAADK---LARERVESNPSAGYVSPYDNPLLWTGH-STLVDEIAIQLEAeglgEPGAIVVSVGGGGLLCGVLEGCSrRKLTSTKIVTSETEGAACfqksydASGDDDNNNgnNNGPITLPGIdsiatslGaTSCTPVALERARSHcggfSANACTDEEAVDACVRFAKDHRMLVEPACGAALAVV 377
                 59**********9999******************999999999999875....589999*****************************************865..5677877664...556666667888888999999888888.577899999998655668899*************99888758899999**999999754122222445444443013445555555222222221345677787765442222345677888888888888888888888888888765 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   2.4e-09   5.8e-07      51     381 ..      94     410 ..      87     414 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 2.4e-09
   TIGR00263  51 tpltfaknlskklggakiylkredllhtGahkinnalgqallakrlGkkriiaetGaGqhGvatataaallglecevymGaedverqklnvfrmellgakvvpvtsGsktlkdavnealrdWvtsvedthyvlGsavGphPfPeivrefqsvigeevkeqilekegrlPdaviacvGGGsnaiGifaafiede..eveligveagGkGidt.ekhaatlskGkeGvlhGaktkllqdedGqieeahsvsaGldypgvgPehaal..aetgraeyeaitdeealealkllskeeGii..palesshalaaleklapklk...kdeivvvnlsGrGdkdletv 381
                 tpl  ++ ls  +g + +ylk + l+ +G+ k   +   +   ++ G +++i+  G G  G+a at++ llgl+++v + ++    + l + ++e lga+v+   +G  +  +a ++  r+ v s  ++ yv      p+  P +  +  s + +e+  q++++    P a++ +vGGG    G+++     +  + ++++ e+ G    + + +a+  +  ++G  +G  t              s+++ l  ++ +P   +    + g  + +a tdeea++a  +++k+  ++  pa  ++ a+ + e+l ++      d  +vv+++G    d++ +
  MMETSP1061-20121228|1104_1  94 TPLIRSQPLSALVG-KPVYLKLDALQASGSFKDRGMAHLCATFRQEGTTEVISSSG-GNAGLAVATVGGLLGLDVSVIVPET---TKPLVIAKLESLGANVTI--HG--VNWNAADKLARERVESNPSAGYV-----SPYDNPLLW-TGHSTLVDEIAIQLEAEGLGEPGAIVVSVGGGGLLCGVLEGCSRRKltSTKIVTSETEGAACFQkSYDASGDDDNNNGNNNGPITL---------PGIDSIATSLGATSCTPVALERarSHCGGFSANACTDEEAVDACVRFAKDHRMLvePACGAALAVVYSERLRKSCLetvGDGPIVVEVCGGSGVDIDLL 410
                 89999999999987.99***************99998899999*********9998.99******************99876...4678889*******9974..33..34688999999999999999886.....566666555.456777899******998889*****************998876541157788888877754431444544444555555544432.........23457777777777777544330044577888999*************99886545899999999988877665431237999******9888888765 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   1.7e-09   4.1e-07     114     280 ..     141     299 ..     124     360 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.7e-09
   TIGR03528 114 itfvtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatitdlnyddavrlaakkaeekGwvvvqdtaweGyeeiPtwimqGyttlalealeqlkelgvekpthvllqaGvGslagavlGylaskfgeerpiivivepdkadclyrsavaddGeih 280
                    ++++ Gn G  va     lg    v +P  +    + +++  Ga++ti  +n++ a +la ++ e +            y++    +  G++tl  e+  ql+++g  +p  +++  G G l  +vl   +s+ +  + +iv  e++ a+c+ +s  a  G+  
  MMETSP1061-20121228|1104_1 141 TEVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGANVTIHGVNWNAADKLARERVESNP----SAGYVSPYDNP--LLWTGHSTLVDEIAIQLEAEGLGEPGAIVVSVGGGGLLCGVLEG-CSRRKLTSTKIVTSETEGAACFQKSYDA-SGDDD 299
                 45688999********************************************************9999876....22333456553..4568***************************9998877666543.45666677889999*******9887543.34333 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   8.6e-07   0.00021      68     149 ..      93     171 ..      81     214 .. 0.85
   2 ?   -0.3   0.0       0.3        73     233     261 ..     234     263 ..     222     295 .. 0.75
   3 ?    4.4   0.0     0.011       2.7     343     409 ..     339     407 ..     317     415 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 8.6e-07
   TIGR01415  68 PtPlirakkleellgtkariyyksesvsptGshkintaiaqayyakkeGvkrlvtetGaGqWGsalslaaalldlkvkvfmv 149
                  tPlir++ l  l+g +  +y+k ++ + +Gs k           ++eG  ++++ +G G  G a+++ + ll+l+v v + 
  MMETSP1061-20121228|1104_1  93 VTPLIRSQPLSALVGKP--VYLKLDALQASGSFKDRGMAHLCATFRQEGTTEVISSSG-GNAGLAVATVGGLLGLDVSVIVP 171
                 59*************98..6**************765444445569999999998887.899***************99765 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.3
   TIGR01415 233 eakkqleeag.ekPdvivgcvGGGsnfagl 261
                 e+  qle +g  +P  iv  vGGG   +g+
  MMETSP1061-20121228|1104_1 234 EIAIQLEAEGlGEPGAIVVSVGGGGLLCGV 263
                 666788877633699999999999877665 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.011
   TIGR01415 343 GlveaeaydqeevfeaavlfakaeGivPaPesahaiava..ideakkareegkekvilfslsGhGlldl 409
                 G  +a+a   ee+++a v fak   ++  P    a+av+   +  k + e+  +  i++++ G   +d+
  MMETSP1061-20121228|1104_1 339 GGFSANACTDEEAVDACVRFAKDHRMLVEPACGAALAVVysERLRKSCLETVGDGPIVVEVCGGSGVDI 407
                 667899*****************9988666666666555105556677888888888888887666665 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.7e-09   1.1e-06      96     259 ..     142     297 ..     114     362 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 4.7e-09
   TIGR01747  96 tfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitdlnyddavrlankmaqekgwvlvqdtaweGyekiptwimqGyatlaveaveqlrelgselpthvllqaGvGslaGavlGylveafsenipniivveadkadclyqsavkddGe 259
                   ++++ Gn G  va     lG++  v++p  +      ++e  Ga+vti+ +n++ a +la++  + +            y++   w   G++tl +e   ql   g   p  +++  G G l  +vl       +  + +i+  e++ a c+ +s     G+
  MMETSP1061-20121228|1104_1 142 EVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGANVTIHGVNWNAADKLARERVESNPSA----GYVSPYDNPLLW--TGHSTLVDEIAIQLEAEGLGEPGAIVVSVGGGGLLCGVLEGCSR-RKLTSTKIVTSETEGAACFQKSYDA-SGD 297
                 4567889***************************************************99999988877633....334567776666..7******************************9999999866544.445567889999******8877433.444 PP

>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.3e-07   0.00013       7     213 ..      93     280 ..      88     295 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 5.3e-07
   TIGR01275   7 ptPiqylkrlseklGaeiyikrDDltglelsGnkirkLefLlaealkkgadtvitvGaiqsnharatalvakklgLkavllLrkskkvadedeelkGnlLldkllgaevrvvsaeeyeeiealleelkeklekeGkkpyviPvGGsnslGalGyveavleiaeqlnlesevkfdsivvaaGsgGtiaGlslGlsaLkeevesvgvav 213
                  tP+ + + ls  +G+ +y+k D l   + +  k r + +L a   ++g + vi   +   n   a a+v   lgL+  +++ +++k     + l+  + l + lga+v++       + +a  +  +e++e +    yv P    n+l   G+   v eia ql+ e+  +  +ivv++G gG + G+  G s  k  ++++ v+ 
  MMETSP1061-20121228|1104_1  93 VTPLIRSQPLSALVGKPVYLKLDALQ--ASGSFKDRGMAHLCATFRQEGTTEVISSSG--GNAGLAVATVGGLLGLDVSVIVPETTK-----P-LVIAK-L-ESLGANVTIHGV----NWNAADKLARERVESNPSAGYVSPY--DNPLLWTGHSTLVDEIAIQLEAEGLGEPGAIVVSVGGGGLLCGVLEGCSRRKLTSTKI-VTS 280
                 69999999*************99764..3455799****************9998776..688999999********9998874444.....2.22222.2.346888666543....3444445567899999999*****8..69*********************98899*****************9999888777766.444 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     1e-06   0.00025      92     175 ..     115     198 ..     100     213 .. 0.76
   2 ?   -1.5   0.0      0.75   1.8e+02     324     378 ..     345     402 ..     334     406 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1e-06
   TIGR03844  92 gallktcsfkelealptlqrlkekgkkvlvvasaGntgrafaevsaltgkpvvlvvPesavdrlwttedassvllvtveg.dytd 175
                 +al  ++sfk+   +      +++g+  ++ +s Gn+g a a+v  l g +v ++vPe +   l +++ +s    vt++g ++  
  MMETSP1061-20121228|1104_1 115 DALQASGSFKDRGMAHLCATFRQEGTTEVISSSGGNAGLAVATVGGLLGLDVSVIVPETTKP-LVIAKLESLGANVTIHGvNWNA 198
                 677789*****988888888888877777778899**********************98765.4455444444555555544444 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.75
   TIGR03844 324 avsneeakeakklfeesegidilPaaavavaalvk.aveeGlvkk..ddkillnitGG 378
                 a ++eea++a   f++   + ++Pa   a+a + +  +++  +++  d  i++++ GG
  MMETSP1061-20121228|1104_1 345 ACTDEEAVDACVRFAKDHRMLVEPACGAALAVVYSeRLRKSCLETvgDGPIVVEVCGG 402
                 6788999999999999999999999998888776414555555543366788888777 PP

>> TIGR02035  D_Ser_am_lyase: D-serine ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.5   3.6e+02      91     114 ..     105     128 ..      86     142 .. 0.80
   2 !   15.4   0.0   5.4e-06    0.0013     156     280 ..     144     264 ..     129     289 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.5
   TIGR02035  91 lsGr.lllkkdshlpisGsikarGG 114
                 l G+ ++lk d  l  sGs k rG 
  MMETSP1061-20121228|1104_1 105 LVGKpVYLKLDA-LQASGSFKDRGM 128
                 556546899885.999*****9995 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 5.4e-06
   TIGR02035 156 avGstGnlGlsiGiisaalGfkvtvhmsadakkwkkdklrskGvtvveyesdyskaveeGrkeaeadplsyfvddeksrdlflGyavaasrlkkqldkkgikvdkehplfvylpcGvGGgpGGva 280
                    s Gn Gl++  ++  lG+ v+v +   +k    +kl s G +v  +  +++ a +  r + e++p + +v   +   l+ G++   + +  ql+++g+     +p  + +  G GG   Gv 
  MMETSP1061-20121228|1104_1 144 ISSSGGNAGLAVATVGGLLGLDVSVIVPETTKPLVIAKLESLGANVTIHGVNWNAADKLARERVESNPSAGYVSPYDNPLLWTGHSTLVDEIAIQLEAEGL----GEPGAIVVSVGGGGLLCGVL 264
                 45789*******************************************************************************************99986....34555556666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.43
# Mc/sec: 1292.27
//
Query:       MMETSP1061-20121228|1107_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1061-20121228|1111_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 617.95
//
Query:       MMETSP1061-20121228|1109_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-23   81.6   0.8    3.6e-08   31.3   0.0    3.2  3  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
    9.6e-11   39.9   1.5    2.7e-07   28.7   0.0    3.5  3  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
    1.3e-08   32.8   0.0    3.8e-05   21.4   0.0    2.4  2  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    2.1e-05   22.4   0.5      0.038   11.8   0.0    3.1  2  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
    4.5e-05   21.1   0.1    0.00013   19.6   0.0    1.8  2  TIGR02247 HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
    4.7e-05   21.5   0.2       0.02   12.9   0.0    2.7  3  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
    4.7e-05   21.5   0.1        0.8    7.7   0.0    3.1  3  TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB
    5.7e-05   21.1   0.1       0.35    8.7   0.0    3.4  3  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
    0.00025   18.5   0.0     0.0096   13.3   0.0    2.9  3  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
  ------ inclusion threshold ------
      0.024   12.6   0.1       0.38    8.7   0.0    2.3  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
      0.028   12.2   0.2       0.17    9.6   0.0    2.2  2  TIGR01990 bPGM: beta-phosphoglucomutase
       0.04   12.2   0.1       0.42    8.9   0.0    2.7  4  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
        4.8    5.4  15.9        1.3    7.2   5.3    2.2  2  TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family


Domain annotation for each model (and alignments):
>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   1.1e-10   3.6e-08       2      61 ..      32      93 ..      31      97 .. 0.86
   2 !   21.7   0.0   9.8e-08   3.1e-05      72     154 ..     128     216 ..     112     234 .. 0.76
   3 !   25.7   0.1   5.9e-09   1.9e-06     153     182 ..     254     283 ..     243     284 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 1.1e-10
   TIGR01993  2 vllFDlDntLypssagifklikr.niteflaeklklse.eeaeklrkdyykeyGttlaGLvi 61
                +l+FD+D+tLy+ + g ++  +   i ++++++l++++ e a++lr +y+ +y +t + L++
  MMETSP1061-20121228|1109_1 32 TLIFDVDDTLYDVASGFTAHRNGpVIWKYMVDHLGFETqETAKALRDEYFEQYHSTAKALTV 93
                689*************99887752699*********86266999************999876 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 9.8e-08
   TIGR01993  72 eevhdrlpyeklkpdpelrnlllklkqrkiiftNadkahaeralkrLgiedcFdg.........iidieaanlelilKPspeayekalreag 154
                 +++h   p e+  ++ + +++l+  +   + f+N+ + +++++l++Lg+ + F           +  ++++ ++  +KP+ ea+ k++++ +
  MMETSP1061-20121228|1109_1 128 THAHP-TPEESRRAKAAFGKALADCPATLVAFSNGPRSYVTKVLDQLGLLELFGTdrrskdgalVWGVDDVLPH--CKPEAEAFCKIFAKLE 216
                 45666.7888899999***********************************99641122222223444555555..9999999999877665 PP

  == domain 3    score: 25.7 bits;  conditional E-value: 5.9e-09
   TIGR01993 153 agvdpekaifldDsarNiaaakalglktvl 182
                  +v p+++++++Ds++N+ aakalg+ktvl
  MMETSP1061-20121228|1109_1 254 EKVLPSECVMVEDSMKNVRAAKALGMKTVL 283
                 458899***********************8 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.3    0.0036       1.1       2      21 ..      33      52 ..      32      83 .. 0.92
   2 ?   -0.0   0.0      0.62   1.9e+02     106     127 ..     197     218 ..     193     221 .. 0.80
   3 !   28.7   0.0   8.4e-10   2.7e-07     125     154 .]     255     284 ..     250     284 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0036
   TIGR01509  2 ilFDlDgvLvdtekglvpee 21
                ++FD+D++L+d  +g++ + 
  MMETSP1061-20121228|1109_1 33 LIFDVDDTLYDVASGFTAHR 52
                89**********99988875 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.62
   TIGR01509 106 dvgsgKPdpdiylqalkklglk 127
                  ++++KP+ +++ +  +kl   
  MMETSP1061-20121228|1109_1 197 VLPHCKPEAEAFCKIFAKLEER 218
                 5789********9999888765 PP

  == domain 3    score: 28.7 bits;  conditional E-value: 8.4e-10
   TIGR01509 125 glkpeeclfvdDsaagieaakaaGmktvlv 154
                 ++ p+ec+ v+Ds ++++aaka+Gmktvl+
  MMETSP1061-20121228|1109_1 255 KVLPSECVMVEDSMKNVRAAKALGMKTVLI 284
                 577*************************86 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00066      0.21       4      89 ..      32     123 ..      29     181 .. 0.61
   2 !   21.4   0.0   1.2e-07   3.8e-05     164     219 ..     255     315 ..     249     317 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00066
   TIGR02253   4 avfFDlddTLidtsklaekalr..evvevlieegleldeee.aleeleklikelgsnyekhfdslirrlseeaep.........klvaeaviaylklk 89 
                  + FD+ddTL+d       +++   + + + ++ l  + +e a     + ++++ s      +  ++  ++e ++         k+++e ++ +l++ 
  MMETSP1061-20121228|1109_1  32 TLIFDVDDTLYDVASGFTAHRNgpVIWKYMVDH-LGFETQEtAKALRDEYFEQYHST----AKA-LTVAQTEGKFpggapvfdaKHMSEYWVNHLDYD 123
                 678*********988877777522577889988.44433330333333333333333....333.222222222234444556666666666666554 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 1.2e-07
   TIGR02253 164 gvkpeeavmvGDrlekDikGaknlglktvwinrgkskkee......ddvvekpdfeisslre 219
                 +v p e+vmv D++ k ++ ak+lg+ktv+i  + ++         + + +  d  +  ++e
  MMETSP1061-20121228|1109_1 255 KVLPSECVMVEDSM-KNVRAAKALGMKTVLITGSREEGRIlpgdapEADDPAVDLAVATVEE 315
                 79**********98.68**************9998887655555444444555555555555 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00012     0.038       3     144 ..      34     203 ..      32     207 .. 0.61
   2 ?    5.1   0.0     0.014       4.4      23      98 ..     212     287 ..     205     290 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
   TIGR01488   3 ifDfDgTLtdqdsliellkkllgtndevkeltrlvlegrisfedrlgrrlkllersl...............................leelak...eflakevair....pgare.likwlkekGiklvivSggldflveklaeklgidkvfanelelddnGlltgriegevnpsgeeKg 144
                 ifD+D+TL+d  s   +++++ g    +k + + ++  + ++ ++l++++ ++++s                                           + +  +++      a++ + k l +  ++lv  S g++++v k++ +lg+ ++f+++ +  ++G l++   g +++  ++K 
  MMETSP1061-20121228|1109_1  34 IFDVDDTLYDVAS--GFTAHRNGP-VIWKYMVDHLGFETQETAKALRDEYFEQYHSTakaltvaqtegkfpggapvfdakhmseywvnH----LdydLLFGTHAHPTpeesRRAKAaFGKALADCPATLVAFSNGPRSYVTKVLDQLGLLELFGTDRRS-KDGALVW---GVDDVLPHCKP 203
                 6677777776666..456666665.5666666655555555555555555555555566666666666666666666666654333331....022222222222223333444441446677888899999***************************.6798888...33556666665 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.014
   TIGR01488  23 llgtndevkeltrlvlegrisfedrlgrrlkllerslleelakeflakevairpgarelikwlkekGiklvivSgg 98 
                 +++++++ ++ +r ++++  +    ++        s++++  +++l +e +  ++ ++ ++ +k+ G k+v+++g+
  MMETSP1061-20121228|1109_1 212 FAKLEERASNHNRNHNNSNSNSNHNNNNNSNNNNNSNSNNNNEKVLPSECVMVEDSMKNVRAAKALGMKTVLITGS 287
                 56666666667777776555555555566666666665555556777777777888888888*************9 PP

>> TIGR02247  HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.8   1.5e+03      49      72 ..      64      86 ..      56      94 .. 0.67
   2 !   19.6   0.0   4.2e-07   0.00013     165     199 ..     254     288 ..     250     291 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.8
   TIGR02247 49 wlrlfekgeleaeafdelfkrkys 72
                +l+ fe++e   +  de+f++  s
  MMETSP1061-20121228|1109_1 64 HLG-FETQETAKALRDEYFEQYHS 86
                666.77777777777777776554 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 4.2e-07
   TIGR02247 165 lgvkPeeivfLDDLgsnlkaAaklGittikvedee 199
                  +v P+e+v ++D  +n++aA++lG++t+++  ++
  MMETSP1061-20121228|1109_1 254 EKVLPSECVMVEDSMKNVRAAKALGMKTVLITGSR 288
                 5899*************************997665 PP

>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.011       3.6       2      34 ..      31      74 ..      30     101 .. 0.72
   2 ?   -1.6   0.0       1.8   5.6e+02     139     157 ..     198     216 ..     157     221 .. 0.60
   3 !   12.9   0.0   6.3e-05      0.02     157     186 .]     255     284 ..     252     284 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.011
   TIGR02009  2 kaviFDlDGvlvdtas...lHakA...wkaladklgle.....f 34
                + +iFD+D +l d as   +H +    wk ++d+lg+e      
  MMETSP1061-20121228|1109_1 31 STLIFDVDDTLYDVASgftAHRNGpviWKYMVDHLGFEtqetaK 74
                679*********9986333787745559******9999444440 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.8
   TIGR02009 139 vkegKPaPetFLaaaekLg 157
                 + + KP+ e F +  +kL+
  MMETSP1061-20121228|1109_1 198 LPHCKPEAEAFCKIFAKLE 216
                 2346888888877777776 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 6.3e-05
   TIGR02009 157 gvkpeecvvfEDaeaGveaaraagmfavav 186
                 +v p+ecv++ED+   v+aa+a gm++v +
  MMETSP1061-20121228|1109_1 255 KVLPSECVMVEDSMKNVRAAKALGMKTVLI 284
                 578***********************9975 PP

>> TIGR01490  HAD-SF-IB-hyp1: HAD hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1    0.0065         2       3      30 ..      34      59 ..      32     100 .. 0.55
   2 !    7.7   0.0    0.0025       0.8      97     160 ..     146     208 ..     137     231 .. 0.83
   3 ?    3.6   0.0     0.046        14      86     114 ..     261     289 ..     239     291 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0065
   TIGR01490  3 fFDlDgTLtakdtlleflkklaskeilt 30
                +FD+D+TL++    + f++++  + i +
  MMETSP1061-20121228|1109_1 34 IFDVDDTLYDVA--SGFTAHRNGPVIWK 59
                8*******9765..45666666655544 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0025
   TIGR01490  97 kahkaeGhkvvlvSasleilvkplArklgidnligtrleeaedGiltGelegenlkgeeKvkal 160
                 ka++++ +++v  S ++  +v ++  +lg  +l gt++++ +dG l  +++    +++  ++a 
  MMETSP1061-20121228|1109_1 146 KALADCPATLVAFSNGPRSYVTKVLDQLGLLELFGTDRRS-KDGALVWGVDDVLPHCKPEAEAF 208
                 677788889999*************************999.****9999887766666655555 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.046
   TIGR01490  86 sllypeardlikahkaeGhkvvlvSasle 114
                   + ++ ++ ++a ka G k+vl+++s e
  MMETSP1061-20121228|1109_1 261 CVMVEDSMKNVRAAKALGMKTVLITGSRE 289
                 5677899999****************976 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.1     0.012       3.9       3      24 ..      32      53 ..      30     100 .. 0.68
   2 ?    2.8   0.0     0.068        22     103     134 ..     148     179 ..     142     182 .. 0.85
   3 !    8.7   0.0    0.0011      0.35     162     191 ..     256     285 ..     250     291 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.012
   TIGR01428  3 alvFDvyGTLvdvesvveraee 24
                 l+FDv  TL+dv s   ++++
  MMETSP1061-20121228|1109_1 32 TLIFDVDDTLYDVASGFTAHRN 53
                689***********99888765 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.068
   TIGR01428 103 LkerglklviLsNgstatlkslvkkagldlef 134
                 L+   + lv+ sNg    + +++ ++gl   f
  MMETSP1061-20121228|1109_1 148 LADCPATLVAFSNGPRSYVTKVLDQLGLLELF 179
                 55556789*******************87766 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0011
   TIGR01428 162 vkpeevllvasnawDlkgAkklGlktvwvn 191
                 v p+e ++v  ++ ++++Ak+lG+ktv + 
  MMETSP1061-20121228|1109_1 256 VLPSECVMVEDSMKNVRAAKALGMKTVLIT 285
                 6799***********************996 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.39   1.2e+02       2      19 ..      34      51 ..      33      59 .. 0.87
   2 ?    0.4   0.0      0.27        87     105     128 ..     156     179 ..     139     219 .. 0.83
   3 !   13.3   0.0     3e-05    0.0096     156     185 ..     256     285 ..     249     299 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.39
   TIGR01449  2 lfDLDGtLvdsAPdlaaa 19
                +fD+D tL d A +++a 
  MMETSP1061-20121228|1109_1 34 IFDVDDTLYDVASGFTAH 51
                7***********998875 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.27
   TIGR01449 105 glvtnkPealarplLellglakyl 128
                     n P++ ++++L+ lgl++++
  MMETSP1061-20121228|1109_1 156 VAFSNGPRSYVTKVLDQLGLLELF 179
                 4567999********999999987 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 3e-05
   TIGR01449 156 vepaqmvyvGDsevDiaaArAAGlpsvllt 185
                 v p ++v+v Ds  ++ aA+A G+++vl+t
  MMETSP1061-20121228|1109_1 256 VLPSECVMVEDSMKNVRAAKALGMKTVLIT 285
                 67899*********************9987 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0       0.2        63       2      14 ..      32      44 ..      31      64 .. 0.79
   2 ?    8.7   0.0    0.0012      0.38     107     138 ..     252     284 ..     205     286 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.2
   TIGR01662  2 lvvlDlDgtLidd 14
                ++++D+D tL d 
  MMETSP1061-20121228|1109_1 32 TLIFDVDDTLYDV 44
                689*******954 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0012
   TIGR01662 107 n..eidakesvvvGDavltDleaakrvGlatvlv 138
                 n  ++ ++e+v+v D +++ + aak+ G++tvl+
  MMETSP1061-20121228|1109_1 252 NneKVLPSECVMVED-SMKNVRAAKALGMKTVLI 284
                 2356789********.**************9986 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.63     2e+02       3      36 ..      32      71 ..      30      78 .. 0.67
   2 ?    9.6   0.0   0.00054      0.17     157     186 ..     255     284 ..     249     285 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.63
   TIGR01990  3 aviFDlDGvitdtae...yhyla...wkkladelgiefde 36
                ++iFD+D  + d a+    h ++   wk ++d+lg e +e
  MMETSP1061-20121228|1109_1 32 TLIFDVDDTLYDVASgftAHRNGpviWKYMVDHLGFETQE 71
                6899999999998752223444344488888888877665 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00054
   TIGR01990 157 gvspeecigieDaeaGieaikaagilavgv 186
                 +v p+ec+++eD+   ++a+ka g+ +v +
  MMETSP1061-20121228|1109_1 255 KVLPSECVMVEDSMKNVRAAKALGMKTVLI 284
                 689**********************99865 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0013      0.42       1      16 [.      32      47 ..      32     106 .. 0.91
   2 ?   -2.4   0.0       3.8   1.2e+03      79     102 ..     155     177 ..     153     185 .. 0.78
   3 ?   -1.9   0.0       2.8   8.9e+02     108     127 ..     196     216 ..     189     220 .. 0.59
   4 ?   -1.6   0.0       2.3   7.2e+02     130     149 .]     259     278 ..     249     278 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0013
   TIGR01549  1 ailfDidGTLvdseak 16
                +++fD+d+TL+d+++ 
  MMETSP1061-20121228|1109_1 32 TLIFDVDDTLYDVASG 47
                589*********9765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.8
   TIGR01549  79 lgiiSngslraqklllrkledyfe 102
                 l+ +Sng++   +++l++l+ + e
  MMETSP1061-20121228|1109_1 155 LVAFSNGPRSYVTKVLDQLGLL-E 177
                 6789999999999999998765.4 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 2.8
   TIGR01549 108 depg.sKpepeiflaaleslg 127
                 d  +  Kpe e+f ++ ++l+
  MMETSP1061-20121228|1109_1 196 DVLPhCKPEAEAFCKIFAKLE 216
                 444445677777666666664 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 2.3
   TIGR01549 130 pevlhvGDnlsDieaaknag 149
                 +e+++v D+ + ++aak++g
  MMETSP1061-20121228|1109_1 259 SECVMVEDSMKNVRAAKALG 278
                 69*******99999999886 PP

>> TIGR02898  spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.8     0.072        23      23      56 ..       5      27 ..       1      46 [. 0.48
   2 ?    7.2   5.3    0.0041       1.3      22      75 ..     224     277 ..     209     288 .. 0.50

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.072
   TIGR02898 23 kdnnnveeknveekaangentakdtnqgekleva 56
                k+nn+++++n++++++           ++k   a
  MMETSP1061-20121228|1109_1  5 KPNNTNNTNNTNTTNN-----------NTKPATA 27
                3444444333333333...........3333333 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0041
   TIGR02898  22 skdnnnveeknveekaangentakdtnqgeklevadkiakevakvkgvkkAtvv 75 
                 ++ nn + + n +++++ ++n++++ n+++      + +    ++k+v+ A+++
  MMETSP1061-20121228|1109_1 224 RNHNNSNSNSNHNNNNNSNNNNNSNSNNNNEKVLPSECVMVEDSMKNVRAAKAL 277
                 123333333333333333333333333333333444455444557777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1316.12
//
Query:       MMETSP1061-20121228|1112_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1219.58
//
Query:       MMETSP1061-20121228|1113_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1475.45
//
Query:       MMETSP1061-20121228|1117_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    9.0   4.0       0.64    8.1   2.8    1.7  1  TIGR00220 mscL: large conductance mechanosensitive channel protein
        1.9    6.3  19.6        1.4    6.8   8.9    2.8  2  TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
        1.9    6.4  28.1        2.2    6.2   1.4    4.5  3  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00220  mscL: large conductance mechanosensitive channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   2.8   0.00047      0.64      10      49 ..      18      57 ..      13      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00047
   TIGR00220 10 lrGnvvdlavgvviGgafgkivsslvadilapllglllgg 49
                l G v+  ++g+++G+ +g ++ +l+a +l  +lg+llg 
  MMETSP1061-20121228|1117_1 18 LLGTVLGTSLGIILGTLLGTVLGTLLAILLGIMLGPLLGI 57
                5688889999999999999999999999999999888875 PP

>> TIGR03750  conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   8.9   0.00099       1.4      27      67 ..      21      61 ..       1      66 [. 0.89
   2 ?    2.0   0.8      0.03        41      29      46 ..      73      90 ..      59      94 .] 0.55

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00099
   TIGR03750 27 avvglvlglvlglllalllgswaliptgallgvilvvligg 67
                 v+g+ lg++lg ll ++lg++++i  g++lg++l+++ g 
  MMETSP1061-20121228|1117_1 21 TVLGTSLGIILGTLLGTVLGTLLAILLGIMLGPLLGIVLGT 61
                57899999999999999********************9875 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.03
   TIGR03750 29 vglvlglvlglllalllg 46
                +g++lg+ lg++l +llg
  MMETSP1061-20121228|1117_1 73 LGTLLGTSLGIMLGTLLG 90
                444455555555554444 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   5.6     0.031        42      93     108 ..      22      37 ..       1      46 [. 0.44
   2 ?    6.2   1.4    0.0016       2.2      92     110 ..      45      63 ..      41      64 .. 0.78
   3 ?    5.5   2.9    0.0027       3.7      96     115 ..      63      82 ..      61      93 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.031
   TIGR00880  93 sagialgpilGpllGa 108
                 ++g++lg+ilG llG+
  MMETSP1061-20121228|1117_1  22 VLGTSLGIILGTLLGT 37 
                 2233333333333333 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0016
   TIGR00880  92 lsagialgpilGpllGavl 110
                 +++gi lgp+lG++lG++l
  MMETSP1061-20121228|1117_1  45 ILLGIMLGPLLGIVLGTLL 63 
                 6788899999999999876 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0027
   TIGR00880  96 ialgpilGpllGavlaqalg 115
                 ++lgp+lGpllG++l++ lg
  MMETSP1061-20121228|1117_1  63 LTLGPLLGPLLGTLLGTSLG 82 
                 68999999999999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 400.23
//
Query:       MMETSP1061-20121228|1123_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         6  (0.0014627); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 305.97
//
Query:       MMETSP1061-20121228|1124_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    6.9   8.4        2.1    5.9   5.8    1.5  1  TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family


Domain annotation for each model (and alignments):
>> TIGR01102  yscR: type III secretion apparatus protein, YscR/HrcR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.8   0.00052       2.1      70     123 ..     283     335 ..     270     338 .] 0.70

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00052
   TIGR01102  70 eeeevelsdidklkklldealepyreflkknteeeevaffeesakklwpkekkd 123
                 ++++++++ +++ +++ +  ++p++++l+++ +++ ++++++++++++++++++
  MMETSP1061-20121228|1124_1 283 TTTTTTTTRMSNNNEFHKGSSHPFQKHLQQQQQQQ-QQHLQQQQQQQQQQQQQQ 335
                 34455677888888999999********9987665.567777776666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       679  (0.165529); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 1013.92
//
Query:       MMETSP1061-20121228|1122_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 1481.68
//
Query:       MMETSP1061-20121228|1127_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.10s 00:00:00.17 Elapsed: 00:00:00.19
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|1126_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 627.95
//
Query:       MMETSP1061-20121228|1130_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       423  (0.10312); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 701.94
//
Query:       MMETSP1061-20121228|1134_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 482.27
//
Query:       MMETSP1061-20121228|1139_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-16   57.0   0.0    6.7e-16   56.3   0.0    1.3  1  TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family


Domain annotation for each model (and alignments):
>> TIGR03840  TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   1.6e-19   6.7e-16      34     173 ..     106     259 ..      71     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 1.6e-19
   TIGR03840  34 eksrvlvPLcGkslDllwLaeqghevvgveLselAve...qffaenelepeveee......gelk.......ryeaeeieilvgdifeltaeelgkvdavYDRAaLiAlPeemrerYakhlaellsegarqlLitldYdqeelegPPFsvseeeve 173
                 ++  vl PL+G    ++ L ++g++v++v+L+  Ave   q f++ne + ++e e      g  +       ++++++++++vgd ++ +++  +++davYD+ ++ AlP ++r+++ +++ae  +++a   L +   + +  +gPPFs++++++ 
  MMETSP1061-20121228|1139_1 106 KNISVLCPLAGDDPFVHLLYSKGYTVTAVDLVAEAVEamkQQFTDNESSWTREPEehsgnsG--DgncdiiwKHKSGRVTLIVGDALKKRPNLNNSFDAVYDKDSFGALPIQLRKQFCQRIAEYTKDNAIVYLECKLKEGNDDSGPPFSLTQDDLM 259
                 5678*****************************99862225577887766555442232331..13333534556899*******************************************************999999999********998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1307.12
//
Query:       MMETSP1061-20121228|1141_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 517.40
//
Query:       MMETSP1061-20121228|1136_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-57  192.7   4.7    2.4e-57  192.7   2.2    1.7  2  TIGR00901 2A0125: AmpG-related permease
    9.9e-12   42.3   9.9      2e-10   38.0   2.9    3.5  2  TIGR02718 sider_RhtX_FptX: siderophore transporter, RhtX/FptX family


Domain annotation for each model (and alignments):
>> TIGR00901  2A0125: AmpG-related permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       0.2   4.1e+02       1      31 [.      71     100 ..      71     103 .. 0.84
   2 !  192.7   2.2   1.2e-60   2.4e-57      19     357 .]     123     530 ..     111     530 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.2
   TIGR00901   1 GlplmlvsntlpvwLreknvalktigflslv 31 
                 G+p++l   ++p +L+ek   l+t +++s +
  MMETSP1061-20121228|1136_1  71 GIPMGLSA-SIPFLLQEKIQKLTTAAAASAA 100
                 89999988.9*******88888888888865 PP

  == domain 2    score: 192.7 bits;  conditional E-value: 1.2e-60
   TIGR00901  19 nvalktigflslvglpYslkflwsPllDqvrlkflgrRrsWlvltqvlllllllilsllnp...........................ssdlpllaglallvaFlsAtQDivldayrleiledeelgaasaiyvvgyrvaillasalaLvLaeallsnsll............ylqslwglifvllallllpgllvsllakepaedvsikvkp...........................lsaavlkpikeffqrkr.iqallllllivlyklgdsvaevlaglflidmGfskeeialvak.vlgvlgtiigalag.gvlikrlsilsalllfgi..vsaltnllfvllaqlgkldailekevlmlvlt.itlenvsgglaasafvaflsklsnpkfsaTqlalLsslsal 357
                   +++  ++++l  +p+slk+lw+P++D+v+ k +grR+sWlv+ q+l  l++++ s +++                           s ++  ++++++++ Fl AtQDi++d+++l++l+++++g +  ++++g++++++l+++++L+L++ + +n+l             +l+sl +++ ++ +++ll++ +v++ ++e +e  +++  +                            +  + ++++ + +  + ++++ l l++ +y+l+ ++ + +  l++++ G+sk   a+++  ++ +lg++++ +a+ +  +++l  +  ++ +++  +  l +l++ +l +  +++   ++ ++  v++  + ++++  l++ a + f ++  +p++++ +++lL+++ +l
  MMETSP1061-20121228|1136_1 123 RASYNANAIFALCSWPFSLKLLWAPIVDAVYFKRFGRRKSWLVPVQTLAGLIMVGGSDFVErqlglgnvvptteggvdaatamatavsSMNVSGVTAFFFVLYFLMATQDIAVDGWALTMLSKKNRGRGPVCNSIGQNIGYFLSFVGFLALNDVESANTLWrpllrlpqnpnkGLVSLKDFLRLMGSFMLLTTAVVAIFKREIKEPPKVVESNnifariggrtnsnssdededddheldaSEIGLRETYHRLWAVSKlPAVRWLFLVLATYRLPVALSDNVKFLKAVECGLSKSTTAILSPtIILPLGILVPIAASkIWHMAPLRQFMRAYEWRVtiIPLLDILMLRILRSGQPHN---TPFFWGAVIAsTAGQAICNSLQFNAQMTFFASRVDPAIGGSYMTLLNTMANL 530
                 5688999**************************************************99999************************99899999*****************************************************************999************************************99999999888844489**********************99888899************99****************************************9615678**********7778*******99998885226678888888888888888...77777655550556889********************************987 PP

>> TIGR02718  sider_RhtX_FptX: siderophore transporter, RhtX/FptX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.2    0.0058        12       3      33 ..      60      89 ..      59     100 .. 0.80
   2 !   38.0   2.9   9.6e-14     2e-10      33     217 ..     124     316 ..     116     319 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0058
   TIGR02718  3 vivlallylsqGiPiglaldalPtllredGa 33
                ++ l +ly  qGiP+gl   ++P ll+e+  
  MMETSP1061-20121228|1136_1 60 YALLIVLYTLQGIPMGLS-ASIPFLLQEKIQ 89
                677899**********97.578999988655 PP

  == domain 2    score: 38.0 bits;  conditional E-value: 9.6e-14
   TIGR02718  33 asltalallslvglPlvvkflvaPlvdnrasarlGrrrsWvlPmqllvvaclasla.....lveldvasagfavGllavaslasavqdiatdGmaaehlsGealakvnavqiagvalGvigGGa.galvligkiGqraaill..lacvslaslvavlwlkdrevaepeaplarkasllrflrrPlalsllala 217
                 as +a a+++l   P+ +k+l+aP+vd  + +r+Grr+sW++P+q l  + +++ +     +++l+        G+ a  ++a+av  +   G++a  +    l  +  + + g al +++    g   + + iGq   ++l  +  ++l  + ++  l +     p+ p++   sl  flr   +++ll+ a
  MMETSP1061-20121228|1136_1 124 ASYNANAIFALCSWPFSLKLLWAPIVDAVYFKRFGRRKSWLVPVQTLAGLIMVGGSdfverQLGLGNVVPTTEGGVDAATAMATAVSSMNVSGVTAFFFVLYFLMATQDIAVDGWALTMLSKKNrGRGPVCNSIGQNIGYFLsfVGFLALNDVESANTLWRPLLRLPQNPNKGLVSLKDFLRLMGSFMLLTTA 316
                 8999*****************************************9877766653311112444444444444455566666777777777777766666666666666666666666665422133344455555544322124445555555555555556666666666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.54
# Mc/sec: 1652.31
//
Query:       MMETSP1061-20121228|1137_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-08   31.6   0.0    3.1e-08   31.4   0.0    1.1  1  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   7.7e-12   3.1e-08      18     103 ..       5      90 ..       1      95 [. 0.85

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 7.7e-12
   TIGR03677  18 vekaretGkikkGtnevtkaverGiaklvviaedveP..eeivahlpalceekkipyvyvkkkedlGkaaGlevsaaavaivdeGkae 103
                 ++ + ++Gk   G    +kav +G+ak+vvia +  P  +  v ++ +l   k   + y  ++ +lG+a+G   +++  +i+d+G+++
  MMETSP1061-20121228|1137_1   5 LKLVMKSGKAILGYRHSMKAVRKGKAKMVVIASNCPPlrKSEVEYMCMLG--KCHVHHYAGNNIALGTACGKFFNCSVLTILDAGDSD 90 
                 6778899***************************9994333466766664..66678999*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 633.55
//
Query:       MMETSP1061-20121228|1143_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1931.55
//
Query:       MMETSP1061-20121228|1145_1  [L=836]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-06   22.7 104.5     0.0012   14.5  13.6    3.2  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00098   14.7  99.6     0.0063   12.0  10.7    3.3  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5  13.6   5.7e-07    0.0012     707     947 ..      46     285 ..      30     314 .. 0.34
   2 !    3.4  18.5    0.0013       2.7     263     379 ..     410     527 ..     372     590 .. 0.28
   3 !    9.4  36.2     2e-05     0.041     252     963 ..     574     826 ..     539     836 .] 0.32

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.7e-07
   TIGR02168 707 keleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeer.eeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekele..eleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerl 947
                 ++l++++e l+ ++++ e+l+++++    + e+l   v++ ++  a++++++ ++++e+ +el+ +++ +++ l ++ ee+++l+++++    e++a+ e+l++ ++ ++ l+ +++++++ les+  + a+ e + e  + ++ +    ++  +++a  +  +e+++++++++++l++++++l ++ +    +  ++++++r+le+kv++ e+e++el++ +++l+++l+  e +i  l+e +
  MMETSP1061-20121228|1145_1  46 RNLQQVRETLRLKQSDYEDLQQEMKFHAIKNEELMDVVNAFRSSSADRSRDIMRAKAEQnSELTLQVHALRDLLTKSGEEVADLQKKLK----ETTAEGERLTADQRCHKHLRVQLDDLAKSLESMDVDGADDEVSNEwlNFKSLLGAIHKKGGDNNAPNNPHSETIDAIRRKITALDADRQRLLKESRFYGISEGDKERTIRDLEQKVQAHEHETSELTATNQELKEQLAVREGKIGALEELF 285
                 22222222222222222222222222222222222222222222222222222222211012222222222222222222222222222....2222222222222223333333333333333332222222222220022333333333333333333333333444444444444444443333333333344444444444444444444444444444444444444444333322222 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0013
   TIGR02168 263 keleeelee.lrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleelee 379
                 k++eeele   r+e++el+e++++l k+ ++++++is+l+++++++ +r ++ +k+    e  l++  ++ ++l++e +e  +++eel++e+  l+ +l  +++ ++e++++ e+l+ 
  MMETSP1061-20121228|1145_1 410 KQVEEELEAaARQEFRELRERYQTLAKDHESAQSKISDLTTKLRETTARANSFQKKAGLREVMLKDVIQQYKNLQAEHSEAIDRVEELQNEVGVLSVQLRDERELRREQKQTPETLDP 527
                 2222222210122222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 2e-05
   TIGR02168 252 eeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeelee 963
                 e+e ++ e++ ++++e  +   l ++ le+e ++lq+e++++  +i++le+++e+++++ +++ + +     ++++ e+++e ++ ++++ +                                                                                                                                                                                                                                                                                                                                                                                                                             + +   + +++++e+  e++ + +++ ++  +l + ieq+k+ +++++++ + +++e++                                                e+ + ++++l  e  +l+k  +++ e+ ++l e+le+++ e  e++k+ + ++++l  + ++ +ql++++e++ +e +el  rlse  ++e + a+  ++
  MMETSP1061-20121228|1145_1 574 ENE-NANENANANANEMANANALVVQCLETECDRLQHEFDTAIDKINELEESLEKARAEARESMALRVDQAVTIARMEAELEASALAATATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATSPADEQSKTEDAGESQMAREKQLQRERDLWEVIEQYKQLVEQNESTKAGANEEVE----------------------------------------------LTEKVTIQRRDLVYEYRKLEKTLEEAVEKGQQLAEDLESAQYEAAEHKKETQGIRKKLAGCHSHYKQLQEQYESVVQENEELDRRLSEALQIEQQLASLSND 826
                 221.2222222222222233333333333333333333333333333333333333333333333333333333333333333333333332............................................................................................................................................................................................................................................................................................................................................................................................................................222222222222222233333333333333333333333333333333333333333333..............................................222333333333333333333333333333333444444444444444444444444444444444444444444444444444444444444433332222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9  15.5   2.6e-05     0.054     241     912 ..      49     291 ..      37     330 .. 0.42
   2 !   12.0  10.7   3.1e-06    0.0063     797     930 ..     391     525 ..     379     543 .. 0.84
   3 !    5.2  31.9   0.00036      0.74     256     510 ..     570     827 ..     529     836 .] 0.60

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 2.6e-05
   TIGR02169 241 ekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasieGvlGtvaqLgkveerYalAiEvAaGnrlnnvVVeddavAkeaIellkerkagratFLPLnkmrskerdlsilaedGvidfavdlvefdekyepvvkyvlgdTlvvedleaarrlmgkfRlVtLeGellekSGaitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekel.eqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeie.......elkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleae 912
                 +++++ l  +                                                                                                                                                                                                                                                                                                                                                                                                                                              + + e+L++e ++ + + +++   +++ +s+  d ++ i ++++e+ ++l  + ++l++ l+++ e++  l+++l+e  +e ++l a+    ++  ++l+ +l+dl ++l++  ++  ++e   + +e  + ++ l +i ++  +++  ++  +e i+ ++++i +l++ ++ + ke         + +  +++le++++ +e +  eL +  ++Lk++   +e ++ +le+  ++++a+
  MMETSP1061-20121228|1145_1  49 QQVRETLRLK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QSDYEDLQQEMKFHAIKNEELMDVVNAFRSSSADRSRDIMRAKAEQnSELTLQVHALRDLLTKSGEEVADLQKKLKETTAEGERLTAD----QRCHKHLRVQLDDLAKSLESMDVDGADDE---VSNEWLNFKSLLGAIHKKGGDNNAPNNPHSETIDAIRRKITALDADRQRLLKESRfygisegDKERTIRDLEQKVQAHEHETSELTATNQELKEQLAVREGKIGALEELFQNINAN 291
                 2222222222..............................................................................................................................................................................................................................................................................................................................................................................................................................................3344444444444444444444444444444444444444433333123444444444444444444444444444444444333333....33333444444444444444444333332...22333333333333333333333333333333333333333333333333333220000000223334444444444444444444444444444444444444444444444433 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.1e-06
   TIGR02169 797 ieeelekleeevsriearleeieaelnkle.lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkakleal 930
                  +++ ++l + +s+ +  ++++e+el++   +e   l+e+ q+l ++ e ++++++++  ++ e  a+ +++++++   e+ +++  +++k+L++e +e+   ++el++++  l++++ ++r+  +e+k++ e+l
  MMETSP1061-20121228|1145_1 391 TDAKDRNLATCLSSDSYHTKQVEEELEAAArQEFRELRERYQTLAKDHESAQSKISDLTTKLRETTARANSFQKKAGLREVMLKDVIQQYKNLQAEHSEAIDRVEELQNEVGVLSVQLRDERELRREQKQTPETL 525
                 556667777778888888999999999888677778889999999999999999999999999999999999999999999999999999999999999999999999999999999999999888888877665 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.00036
   TIGR02169 256 kleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleev..........dkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesres 510
                    +e e+ +++ ++ +++++++n+ + +  e e  +++++      +i++le+++++++ e++++ + +  + + i ++++e+e+        +   ++  ++ + + + ++ + +++ e           + +  e+ e+ k+l e+ e++k   ne    +++ + + + l  e ++l++ le++ ek ++l+e+le++++e ++++++ + ++++l+  ++++++l+e++e++ +e +el r l+e+   ++++ + s+++
  MMETSP1061-20121228|1145_1 570 AALVENENANENANANANEMANANALVVQCLETECDRLQHEFDTAIDKINELEESLEKARAEARESMALRVDQAVTIARMEAELEA-------SALAATATATATATSPADEQSKTEDAGESqmarekqlqrERDLWEVIEQYKQLVEQNESTKAGANEEVELTEKVTIQRRDLVYEYRKLEKTLEEAVEKGQQLAEDLESAQYEAAEHKKETQGIRKKLAGCHSHYKQLQEQYESVVQENEELDRRLSEALQIEQQLASLSNDN 827
                 22223334444445555555555555555555555555555555555555555555555555555555555555555555555554.......444444444444333333333333333330000000000333444455566666666666666666555556666666777788999999*****************************************************************99988887777766443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       576  (0.140419); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.12u 0.27s 00:00:01.39 Elapsed: 00:00:00.96
# Mc/sec: 1149.41
//
Query:       MMETSP1061-20121228|1147_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 491.00
//
Query:       MMETSP1061-20121228|1150_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 897.53
//
Query:       MMETSP1061-20121228|1152_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.9   0.0     0.0028   15.2   0.0    1.3  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN


Domain annotation for each model (and alignments):
>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.8e-07    0.0028     100     147 ..     202     251 ..     193     279 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.8e-07
   TIGR02322 100 avlpeararyanll..vvaitaspdvLaqRLaaRgResaeeieeRLarsa 147
                 a l ++r++y +l+   v++ta+ d+L + L++  R+ + e+++R a ++
  MMETSP1061-20121228|1152_1 202 AELSNLRRKYDELVsfSVNLTAERDILSNTLEQTKRDYNREMAARSALEN 251
                 67999*******9833699***********************99966554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1710.58
//
Query:       MMETSP1061-20121228|1153_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.5e-182  603.9  12.6   7.5e-182  603.9   8.7    1.5  1  TIGR00487 IF-2: translation initiation factor IF-2
    1.5e-39  133.8  31.8    1.7e-32  110.4   3.5    4.3  3  TIGR00491 aIF-2: translation initiation factor aIF-2
    2.5e-29  100.0   1.2    5.4e-29   98.9   0.3    2.0  2  TIGR00231 small_GTP: small GTP-binding protein domain
    1.3e-24   84.6  12.7    6.3e-24   82.4   4.9    2.1  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    6.6e-23   78.9  10.4    6.4e-18   62.5   4.5    3.2  2  TIGR00485 EF-Tu: translation elongation factor Tu
    7.2e-22   75.1   9.9    1.7e-17   60.7   6.1    3.9  2  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    2.4e-19   66.9   5.6    2.7e-17   60.2   3.9    2.8  2  TIGR01393 lepA: GTP-binding protein LepA
    3.6e-15   53.7   2.0    1.4e-14   51.8   1.4    1.8  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    9.3e-14   49.3   6.3    3.5e-11   40.8   1.0    2.4  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    3.5e-13   46.4   0.3    6.7e-13   45.4   0.2    1.4  1  TIGR00484 EF-G: translation elongation factor G
    6.6e-13   45.7   8.6    8.7e-10   35.4   3.8    3.6  3  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    7.4e-11   39.5   0.2    1.8e-10   38.3   0.1    1.6  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    3.9e-09   33.3   0.5    8.7e-09   32.1   0.0    1.7  2  TIGR00503 prfC: peptide chain release factor 3
      2e-08   31.3   0.6      2e-08   31.3   0.4    2.3  3  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    1.3e-07   29.3   1.0    9.1e-06   23.3   0.0    2.9  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    1.9e-07   28.4   0.7    1.9e-07   28.4   0.5    1.7  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    2.6e-07   27.5   0.8    2.6e-07   27.5   0.6    1.8  2  TIGR00437 feoB: ferrous iron transport protein B
    3.3e-05   20.0   8.1    6.2e-05   19.1   2.7    2.7  3  TIGR00490 aEF-2: translation elongation factor aEF-2
     0.0067   14.5   0.4      0.028   12.5   0.3    2.1  1  TIGR02528 EutP: ethanolamine utilization protein, EutP


Domain annotation for each model (and alignments):
>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  603.9   8.7  3.5e-184  7.5e-182       9     578 ..     295     886 ..     287     887 .] 0.92

  Alignments for each domain:
  == domain 1    score: 603.9 bits;  conditional E-value: 3.5e-184
   TIGR00487   9 kesltvselaeklnvkesdiikklll.lGvmvtinqvldketielvaeelgvkv.....evrvtleeeevee........eee.dsedkkeerpPvvtimGhvDhGktsLLdsirktkvaegeaGGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpeanpDrvkqelseyglvpeewGGetifvpvsalkgkgideLldaiLlqseveelkanknkqakgvvieakldkgrGpvatvlvqeGtLkvGDivvvgaayGkvramidek.G.ksvkeagPsiaveilGlsevPaaGdelivvkdekkarlvaekraeklkqkklsksvkvkleelseqi.kegelkelniilkaDvqGsleaiknslekle..vee..vkvkvihsgvGeitetDislasas.naiiigfnvrldakakkvaeaenvdlrkysviyklideikavlkGlldPeleeeviGkaevrevfkvpkiGaiaGcvvkeGvikrdnklrvlrdgvvifeGeidsLkrfkddvkeveegyeCGiviknyndikvGDiieafe 578
                 ++++ v +lae ++ k   iik l++  Gvm+ ++q ld  t + v+e++g  v     ++++ ++e e++e        ++e d e+ +++rpPvvtimGhvDhGktsLLd ir+t+v++geaGGitqhi ay+ve +d++ itf+DtPGh+aft mr rGa++tDiv+lvvaadDGvk+qt ++i  a++a+vP++vainkiD + a+p++v+ el++y++++ee+GG++   ++sa++ +++d+Lld+i+lq+e+++lkan++++a++ v+ea+++ g G+vat lv++GtLkvGDi+ +g +yGkvra+i+ + G +++ke+gPs++v+i+G++ +P+aGd+l vv+de++ar +ae r++  ++k ++  +++ ++++s q  + +e + + +++kaDv+Gs+ea++++le+l+  ++e  v vkv+ s +Ge++ +Di +as + +  +++fnv ++  a + a  +n+ l++y+++y++i+ ++  ++ +l+P+ e e +G a v+evf+++  G+iaG+  ++G+++++ ++rv+r+++++ e  i++L++fk +   +e+g eCGi++ +++++  GD+ie + 
  MMETSP1061-20121228|1153_1 295 EGPISVGALAEIIDEKPVAIIKFLMTdCGVMASMTQNLDPSTCAAVVEGFGKIVggdedDEEMDEDEDELDEdsalamgfVTEdDEESLLQSRPPVVTIMGHVDHGKTSLLDAIRNTRVTAGEAGGITQHIAAYEVE-HDGQSITFIDTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQAGVPLVVAINKIDLEAADPNKVMTELTQYDILTEEFGGDVLSSQISAKQKTNLDDLLDKIMLQAEIQDLKANPDRNAEAFVVEANIETGLGTVATSLVKKGTLKVGDIFAAGETYGKVRALISTNdGkTRLKEVGPSTPVRIVGFEGIPSAGDSLVVVDDEQTARTLAESRQRISREKSSNSYQNALMDSVSLQFgASKEQRFMYVLVKADVKGSAEALTHALENLKleNDEavVTVKVLVSDAGEVSKSDIAIASVTpGTTVLAFNVPASYAAMEDARIQNIPLEYYNIVYDAIESVECRMQEVLSPTPEGEYTGAATVQEVFNIGGTGNIAGSRCTDGILRKGGNVRVMRGDKILTETSIKTLRNFKAETDLIESGNECGIGLADFEEFVPGDVIECYV 886
                 5789*******************99637********************776554221112222222222221111111223453777889***********************************************.67779*************************************************************************************************************************************************************************9864324268*************************************************************998746789999********************9876214446699********************98799******************************************************************************************************************************************96 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   3.5     8e-35   1.7e-32       3     133 ..     387     499 ..     385     512 .. 0.94
   2 !   35.4   1.5   4.2e-12     9e-10     197     444 ..     531     785 ..     511     792 .. 0.73
   3 ?    2.2   0.1     0.046        10     231     281 ..     801     852 ..     787     865 .. 0.84

  Alignments for each domain:
  == domain 1    score: 110.4 bits;  conditional E-value: 8e-35
   TIGR00491   3 rsPivavlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvikrlcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
                 r P+v+++GhvdhGkt+lld ir+trv++ eaGgitqhi a e+  d      +              + +idtPGh aft +r rG  ++di ilvv   +G+k+qt +++   rq  +P+vva nkid+
  MMETSP1061-20121228|1153_1 387 RPPVVTIMGHVDHGKTSLLDAIRNTRVTAGEAGGITQHIAAYEVEHDG-----Q-------------SITFIDTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQAGVPLVVAINKIDL 499
                 88***************************************9997763.....2.............3459***********************************************************7 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 4.2e-12
   TIGR00491 197 savtGeGipelllilaGlaqkyledrlklevegkakGtilevkeekGlGvtidaiiydGilkkgdilvvalkddvlvtrvkallkPkPldemreerd.kfkkvdevtaaag..vkiaapeldkviagspirvvskekiekakeevlkeveeikievdde...GilvkadtlGslealvnelrk.........agvkikkaevGdvskkdvvevasakqenklygaivafnvkilpeaekeiekydikvfldniiyklvedfee 444
                 sa++   + +ll  ++   q  + + lk + + +a   ++e   e+GlG+ + +++  G+lk gdi++ + + + + + + +      l+e+  +   ++   + + +a+   v +  ++  + +a s  r+  ++  + +++ +++ v+     ++++    +lvkad  Gs eal + l++          +vk+ +++ G+vsk d+  ++++        +++afnv     a ++++  +i +   ni+y  +e++e 
  MMETSP1061-20121228|1153_1 531 SAKQKTNLDDLLDKIML--QAEI-QDLKANPDRNAEAFVVEANIETGLGTVATSLVKKGTLKVGDIFAAGETYGKVRALISTNDGKTRLKEVGPSTPvRIVGFEGIPSAGDslVVVDDEQTARTLAESRQRISREKSSNSYQNALMDSVSLQFGASKEQrfmYVLVKADVKGSAEALTHALENlklendeavVTVKVLVSDAGEVSKSDIAIASVTP-----GTTVLAFNVPASYAAMEDARIQNIPLEYYNIVYDAIESVEC 785
                 55555555555554442..2223.56999**************************************9988776555555544455567777655441344455566665511444455666789***********************9854333333334489*************99887522222221124677789999***99987655443.....34689******9999999999***************99875 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.046
   TIGR00491 231 akGtilevkeekGlGvtidaiiydGilkkgdilvvalkddvlv.trvkallk 281
                 +  t+ ev +  G G  + +   dGil+kg  + v+  d++l+ t +k+l +
  MMETSP1061-20121228|1153_1 801 GAATVQEVFNIGGTGNIAGSRCTDGILRKGGNVRVMRGDKILTeTSIKTLRN 852
                 5569999**************************9999999986488888755 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.9   0.3   2.5e-31   5.4e-29       3     162 ..     388     545 ..     386     547 .. 0.95
   2 ?   -1.7   0.0       2.2   4.7e+02     142     163 ..     840     861 ..     832     862 .. 0.86

  Alignments for each domain:
  == domain 1    score: 98.9 bits;  conditional E-value: 2.5e-31
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.......dlktkvkslfaklnaep.iielsaetgknidklfklv 162
                    ++i+Ghvd+GK++Ll+ ++ + +   e+  g+t++++++ +e dG    ++++DT+G+++f       + ++er +  +divilv+++++g+++qt   i  a+++gvp+++++nKiDl+        + +t++  l ++ ++    +++sa++ +n+d+l + +
  MMETSP1061-20121228|1153_1 388 PPVVTIMGHVDHGKTSLLDAIRNTRVTAGEA-GGITQHIAAYEVEHDG--QSITFIDTPGHAAF-------TDMRERGANITDIVILVVAADDGVKQQTADSIVCARQAGVPLVVAINKIDLEAadpnkvmTELTQYDILTEEFGGDVlSSQISAKQKTNLDDLLDKI 545
                 5689*********************888888.9***************..56************.......*****************************99999999****************99***9999*************99899***********998875 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.2
   TIGR00231 142 epiielsaetgknidklfklve 163
                 ++++e+s++t++n+ + ++l+e
  MMETSP1061-20121228|1153_1 840 KILTETSIKTLRNFKAETDLIE 861
                 56899************99998 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   4.9   2.9e-26   6.3e-24       3     211 ..     391     596 ..     390     614 .. 0.85
   2 !    5.3   0.2    0.0063       1.4     180     247 ..     804     874 ..     801     877 .. 0.88

  Alignments for each domain:
  == domain 1    score: 82.4 bits;  conditional E-value: 2.9e-26
   TIGR00475   3 iataGHvDHGKttLlkaltgidadrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdee.evkevEeelkeileeeeflknakivkvsAktGqGieeLkkelknLlesldak.dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvl 211
                 ++++GHvDHGKt+Ll a+ ++        +  G+t  +    ++ + + +++iD PGH  f      g ++ d ++Lvv+ad+Gvk qt + +  +++ g++ l+v+++K+D    + +   +E +  +il ee f  +     +sAk+   +++L +++   +e  d k + ++    ++ +a    G Gtv t  + +G+ kvgD    
  MMETSP1061-20121228|1153_1 391 VTIMGHVDHGKTSLLDAIRNTR---VTAGEAGGITQHIAAYEVEHDGQSITFIDTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQAGVP-LVVAINKIDLEAADpNKVMTELTQYDILTEE-FGGDVLSSQISAKQKTNLDDLLDKIMLQAEIQDLKaNPDRNAEAFVVEANIETGLGTVATSLVKKGTLKVGDIFAA 596
                 7789************997765...4445678******877788888*******************************************************.*********6444303334566666777765.555899999************************9989999999******999********************6554 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0063
   TIGR00475 180 aiDraFkvKGaGtvvtGtafsGevkvgDelvle...pinkkvrvkalqaqnqsvekavAGqRialnladvd 247
                 ++ ++F++ G+G +    + +G  + g ++++     i  +  +k+l++++ +++    G+  ++ lad +
  MMETSP1061-20121228|1153_1 804 TVQEVFNIGGTGNIAGSRCTDGILRKGGNVRVMrgdKILTETSIKTLRNFKAETDLIESGNECGIGLADFE 874
                 5789***********999*************972224667889*********************9999987 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.5   4.5     3e-20   6.4e-18      15     241 ..     391     592 ..     381     597 .. 0.83
   2 !   13.2   0.1   2.7e-05    0.0058     202     279 ..     792     870 ..     761     881 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.5 bits;  conditional E-value: 3e-20
   TIGR00485  15 vgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseydfpgddvpivrgsalkalegdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvge 241
                 v  +ghvdhgkt+l  ai ++  + g                 a git   a  e e + +  + +d pgha +      ga   d  ilvv+a dg+  qt + i+ arq gvp lvv +nk+dl   +    + el   ++l+e +f gd v   + sa +   + ++  +ki+ l +++++   +p+r+ +  f+  +e  +  tg gtv+t  v++g++kvg+
  MMETSP1061-20121228|1153_1 391 VTIMGHVDHGKTSLLDAIRNTRVTAG----------------EAGGITQHIAAYEVEHDGQSITFIDTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQAGVP-LVVAINKIDLEAADPNKVMTELTQYDILTE-EFGGD-VLSSQISAKQKT-NLDDLLDKIM-LQAEIQDLKANPDRNAEA-FV--VEANI-ETGLGTVATSLVKKGTLKVGD 592
                 45679999999999999876544433................36799999999999999999*************9999************************************.67889****998888888888888999976.89885.444455555444.4455677776.77899999******9985.54..44443.48******************8 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2.7e-05
   TIGR00485 202 tperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveiv.glketkkttvtgvemfkklldeakagdnvgvll 279
                 +p+ e + +   ++++vf i g g ++  r   g+++ g +v ++ g k  ++t +  +  fk + d  ++g++ g+ l
  MMETSP1061-20121228|1153_1 792 SPTPEGEYTGAATVQEVFNIGGTGNIAGSRCTDGILRKGGNVRVMrGDKILTETSIKTLRNFKAETDLIESGNECGIGL 870
                 45555666667899****************************9985888999**********************99876 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   6.1   7.8e-20   1.7e-17       4     242 ..     391     603 ..     389     653 .. 0.79
   2 !    6.8   0.0    0.0016      0.35     203     255 ..     803     855 ..     776     882 .. 0.77

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 7.8e-20
   TIGR01394   4 iaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdev..fdLfvelgaddeqldfpvvyasakeGvasleeedesedleplfdail..ehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgki 242
                 + i+ hvDhGkt l+D++ +   +                     Git    +  v++++  i  +DtPGha f    er  ++ d v+l+v a +G+  qt   +  a ++g   +v inkiD ++a+p++v+ e   +d+++e      +         + + ++s+ +++++++l++l+d i+   +++  ka++d   ++ v++ + ++ lG +a++ v++G++k g+  a+ ++ gk+
  MMETSP1061-20121228|1153_1 391 VTIMGHVDHGKTSLLDAIRNTRVTA----------------GEAGGITQHIAAYEVEHDGQSITFIDTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQAGVPLVVAINKIDLEAADPNKVMTELtqYDILTE------EF--------GGDVLSSQISAKQKTNLDDLLDKIMlqAEIQDLKANPDRNAEAFVVEANIETGLGTVATSLVKKGTLKVGDIFAAGETYGKV 603
                 7899************974332222................22369999999999******************************************************************************987511333332......22........3334445556677889******99844568999*************************************977665554443 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0016
   TIGR01394 203 llvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeg 255
                 + v+++ +   +G ia +r ++G ++kg +v++++ d+ ++++ i++l +f++
  MMETSP1061-20121228|1153_1 803 ATVQEVFNIGGTGNIAGSRCTDGILRKGGNVRVMRGDKILTETSIKTLRNFKA 855
                 44555555555799********************************9998875 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   3.9   1.3e-19   2.7e-17      50     222 ..     420     594 ..     389     618 .. 0.80
   2 ?   -1.3   0.0      0.51   1.1e+02     192     253 ..     803     864 ..     780     880 .. 0.72

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 1.3e-19
   TIGR01393  50 GitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeiee..viGldae.e..ailvsaktGigieelleaiv..kkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdki 222
                 Git    a ++++     +   + +idtPGh+ f+    r  + ++ ++l+v a  Gv+ qt   +  a +  + ++  inkidl +ad+++v +e+ +  ++  +   +  + ++sak+ +++++ll++i+   ++   k +++ + +a+++++  ++  G v+   v++G++k+gd +
  MMETSP1061-20121228|1153_1 420 GITQHIAAYEVEH-----DGQSITFIDTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQAGVPLVVAINKIDLEAADPNKVMTELTQydILTEEFGgDvlSSQISAKQKTNLDDLLDKIMlqAEIQDLKANPDRNAEAFVVEANIETGLGTVATSLVKKGTLKVGDIF 594
                 5555554444443.....445799***********************************************************************997521444443323113479***************8334689999***********************************9865 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.51
   TIGR01393 192 alifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpklvkeeelkaGe 253
                 a + + +     G ++  r ++G ++kg +++++  +k  + + + +l+  +++++ +++G+
  MMETSP1061-20121228|1153_1 803 ATVQEVFNIGGTGNIAGSRCTDGILRKGGNVRVMRGDKILTETSIKTLRNFKAETDLIESGN 864
                 44444444455788999999**************9999877777777666667777777774 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   1.4   6.3e-17   1.4e-14     164     347 ..     379     550 ..     350     566 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 6.3e-17
   TIGR03594 164 eeeeeeeeeeepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlv..kdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevye 347
                 +ee+    +++p  ++i+G    GK +L+ a+ +++rv + +  G+T+     eve++g+++++iDT G    + +++  e+          +  d+v+lv+ a +g+++q +  +  + ++g +lv+++NK+Dl   + +k ++el++    + +f   +    iSA++++++++ll++i   +e
  MMETSP1061-20121228|1153_1 379 DEESL--LQSRPPVVTIMGHVDHGKTSLLDAI-RNTRVTAGEAGGITQHIAAYEVEHDGQSITFIDTPGH---AAFTDMRERG--------ANITDIVILVVAADDGVKQQTADSIVCARQAGVPLVVAINKIDLEaaDPNKVMTELTQYDILTEEFGGDVLSSQISAKQKTNLDDLLDKIMLQAE 550
                 22222..2356889***************997.678*********************************5...4444444543........45579***************************************9766666667766666667788899999****************9976555 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.2   0.00024     0.051       8      27 ..     391     410 ..     385     419 .. 0.84
   2 !   40.8   1.0   1.6e-13   3.5e-11      81     212 ..     435     567 ..     421     595 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00024
   TIGR03680   8 iglvGhvDhGkttlvkaltG 27 
                 ++++GhvDhGkt+l  a+  
  MMETSP1061-20121228|1153_1 391 VTIMGHVDHGKTSLLDAIRN 410
                 6889**********999865 PP

  == domain 2    score: 40.8 bits;  conditional E-value: 1.6e-13
   TIGR03680  81 rkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidl..vskekalenyeeikefvkgtvaenapiiPvsalkkvnidvlleal..ekeiptperdldkdalllva 212
                 + ++f+D+PGh ++      Ga + d  +Lv+aa++ v + qt + +v     g+  +v++ nkidl   + +k++ +  +   ++ +++  +     +sa++k+n+d ll+++  + ei+  ++++d++a   v+
  MMETSP1061-20121228|1153_1 435 QSITFIDTPGHAAFTDMRERGANITDIVILVVAADDGV-KQQTADSIVCARQAGVP-LVVAINKIDLeaADPNKVMTELTQYD-ILTEEFGGDVLSSQISAKQKTNLDDLLDKImlQAEIQDLKANPDRNAEAFVV 567
                 679***********99999*******************.89*************95.899******93345678888888764.56667778888889*************9762267888888888887766654 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.2   3.1e-15   6.7e-13      58     153 ..     418     513 ..     389     550 .. 0.91

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 3.1e-15
   TIGR00484  58 erGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlks 153
                   Git   aa +ve  + +i  idtPGh  ft   er   + d  ++v+ a  Gv+ q+      a++ +vP +v +nk+d   a++ kv+++l +
  MMETSP1061-20121228|1153_1 418 AGGITQHIAAYEVEHDGQSITFIDTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQAGVPLVVAINKIDLEAADPNKVMTELTQ 513
                 459*********************************************************99999************************9998865 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.17        36      10      24 ..     391     405 ..     389     410 .. 0.85
   2 !   35.4   3.8     4e-12   8.7e-10      50     160 ..     400     506 ..     395     607 .. 0.87
   3 !    8.0   0.0   0.00084      0.18     231     261 ..     804     834 ..     772     870 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.17
   TIGR00483  10 vafighvdsgkstlv 24 
                 v+++ghvd+gk++l+
  MMETSP1061-20121228|1153_1 391 VTIMGHVDHGKTSLL 405
                 6799*******9875 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 4e-12
   TIGR00483  50 gkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeek 160
                 gk+s+  a    ++ +    g+t  +a    e d   +t +d+pgh  f      ga  +d  +lvva+ddg   v+ qt + ++ ar  g+  l+vaink+d    d +k
  MMETSP1061-20121228|1153_1 400 GKTSLLDAIRNTRVTAGEAGGITQHIAAYEVEHDGQSITFIDTPGHAAFTDMRERGANITDIVILVVAADDG---VKQQTADSIVCARQAGVP-LVVAINKIDLEAADPNK 506
                 66666666666677777788*******************************99******************9...9***************96.99*******87666554 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.00084
   TIGR00483 231 piqdvysitgvgtvpvgrvetgvlkkgekvv 261
                  +q+v++i+g g +   r   g+l+kg +v 
  MMETSP1061-20121228|1153_1 804 TVQEVFNIGGTGNIAGSRCTDGILRKGGNVR 834
                 69************************99884 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.1   8.2e-13   1.8e-10      64     184 ..     419     537 ..     379     545 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 8.2e-13
   TIGR02034  64 qgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdylalaeklgvsdvtviPlsalkGdn 184
                  git  +a    + d ++    dtPGh  +t     ga  +d+++l+v a  Gv +qt    + a   G+  +v+a+nkidl   d +   +  ++y  l+e++g   v    +sa++  n
  MMETSP1061-20121228|1153_1 419 GGITQHIAAYEVEHDGQSITFIDTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQAGVP-LVVAINKIDLEAADPNKVMTELTQYDILTEEFGGD-VLSSQISAKQKTN 537
                 5788888777778888888899************************************9999999999995.899*******9999776666667899999988753.4444566666555 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0     4e-11   8.7e-09      69     158 ..     424     513 ..     395     519 .. 0.90
   2 ?   -2.0   0.0      0.92     2e+02     364     382 ..     581     599 ..     570     603 .. 0.86

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 4e-11
   TIGR00503  69 ttsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplelldeven 158
                   +  + ++ ++ + ++dtpGh  f++   r    +d +++v+ a  Gv+++t   +  +r   +p++  +nk+d +  dp +++ e+ +
  MMETSP1061-20121228|1153_1 424 HIAAYEVEHDGQSITFIDTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQAGVPLVVAINKIDLEAADPNKVMTELTQ 513
                 445556677888999**********************************************************************99876 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.92
   TIGR00503 364 GlhnhGtiqiGdtvtqGek 382
                  l  +Gt+++Gd +  Ge+
  MMETSP1061-20121228|1153_1 581 SLVKKGTLKVGDIFAAGET 599
                 57789************97 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       1.9   4.2e+02     203     227 ..      58      82 ..      51     111 .. 0.66
   2 !   31.3   0.4   9.1e-11     2e-08       9     165 ..     390     547 ..     384     560 .. 0.73
   3 ?   -2.5   0.1       1.7   3.7e+02      27      42 ..     732     747 ..     727     749 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.9
   TIGR03918 203 ilPQvqviRdildkdaialvvkeee 227
                  lPQ  +iR+i +++++ +  +e +
  MMETSP1061-20121228|1153_1  58 FLPQLLMIREIKEAETAPTEASEAS 82 
                 6899999999988877666555554 PP

  == domain 2    score: 31.3 bits;  conditional E-value: 9.1e-11
   TIGR03918   9 hialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplG.pvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke........keklekkkeeevv..lvsakekegieelkealie 165
                  ++++G+   GK sl+ a+ ++   +++  +G  t  ++ a+E+ + G  +++iDT+G    +++ ++R +      + td+++lvv a+ +++++  + +  +++  +p++v++nkidl+ ++ +         + l+++++ +v+   +sak+k+++++l ++++ 
  MMETSP1061-20121228|1153_1 390 VVTIMGHVDHGKTSLLDAIRNTR--VTAGEAGGITQHIA-AYEVEHDGqSITFIDTPGH---AAFTDMRERG----ANITDIVILVVAADDGVKQQTADSIVCARQAGVPLVVAINKIDLEAADPNkvmteltqYDILTEEFGGDVLssQISAKQKTNLDDLLDKIML 547
                 589****************8766..67788888888875.899998884699******6...5666777544....4679***************************************9987644332222212222333333333114566666666666666654 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 1.7
   TIGR03918  27 ltgqdvaivsdvpGtT 42 
                 + + d+ai s +pGtT
  MMETSP1061-20121228|1153_1 732 VSKSDIAIASVTPGTT 747
                 67889**********9 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   4.2e-08   9.1e-06       9     185 ..     379     545 ..     373     546 .. 0.72
   2 ?   -2.2   0.0       2.8     6e+02     119     161 ..     675     718 ..     670     742 .. 0.66
   3 ?   -3.1   0.0       5.3   1.1e+03      41      55 ..     734     748 ..     731     752 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 4.2e-08
   TIGR03598   9 klkqlpedklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevne...elrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkks..elkkalkkvkkelkkeeekvevllfSslkkegieelkael 185
                 + ++l +++ p + ++G    GK sl+ a+ n +  + + +  G Tq+i  +ev++   +++++D PG+  a+ ++ + e+  + i            v+l+v +  ++k++  + + ++++a++p++v ++K+D       ++ ++l+++   +++   +v    +S+++k+++++l +++
  MMETSP1061-20121228|1153_1 379 DEESLLQSRPPVVTIMGHVDHGKTSLLDAIRNTR--VTAGEAGGITQHIAAYEVEHdgqSITFIDTPGH--AAFTDMR-ER-GANI---------TDIVILVVAADDGVKQQTADSIVCARQAGVPLVVAINKIDLEAADpnKVMTELTQYDILTEEFGGDVLSSQISAKQKTNLDDLLDKI 545
                 5667788888999*****************9999..6678899***********6545489******96..4443322.22.2222.........234666677777888888888999999999999999999965444003333444444344444667778889999999999988776 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.8
   TIGR03598 119 lellellkeakipvlvvltKaD.klkkselkkalkkvkkelkke 161
                    l++ ++++ +++ vl KaD k + ++l++al+++k e ++ 
  MMETSP1061-20121228|1153_1 675 SVSLQFGASKEQRFMYVLVKADvKGSAEALTHALENLKLENDEA 718
                 55567777888899999999995566666666666666544444 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 5.3
   TIGR03598  41 rkklartSktPGrTq 55 
                 +  +a +S tPG T 
  MMETSP1061-20121228|1153_1 734 KSDIAIASVTPGTTV 748
                 567999******995 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.5   8.8e-10   1.9e-07     207     380 ..     386     548 ..     350     567 .. 0.76
   2 ?   -2.1   0.1       1.5   3.3e+02     348     416 ..     661     730 ..     643     744 .. 0.61

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 8.8e-10
   TIGR00450 207 kdglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd.eliitlkkkkkdlllvlNKiDLaeleilkselkltvsllsakqlkikelvdlltekinalyskekde.ldlalis 380
                 + +  ++i+G++  GK SLl a+ +  r    +  G t  +   ++e +G  +  +Dt G     d  E+         ++ +d+v++v+ a  + +++  + i   +++  +l++ +NKiDL   +  k    lt   +    l  + + d+l+ +i+a  +++ d+ ld+++++
  MMETSP1061-20121228|1153_1 386 SRPPVVTIMGHVDHGKTSLLDAIRN-TRVTAGEAGGITQHIAAYEVEHDGQSITFIDTPGHAAFTDMRER--------GANITDIVILVVAADDGVKQQTaDSIVCARQAGVPLVVAINKIDLEAADPNKVMTELTQYDI----LTEEFGGDVLSSQISAKQKTNLDDlLDKIMLQ 548
                 4566799***************865.699999****************************9999998887........356789******999998776667899999***************96655555333443333....44455667888888877777666634444443 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.5
   TIGR00450 348 kqlkikelvdlltekinalyskekdeldlalisssealillekaiaeleqll.eklekqlfldllvvdlr 416
                 +++ ++   ++l++ ++  +   k+++ ++++ +   +  +e  ++ le+l+ e+ e ++   +lv d+ 
  MMETSP1061-20121228|1153_1 661 REKSSNSYQNALMDSVSLQFGASKEQRFMYVLVKADVKGSAEALTHALENLKlENDEAVVTVKVLVSDAG 730
                 5566666777777777765555444444555555555677777777777754134444556666666655 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.6       2.2   4.7e+02     177     225 ..      67     115 ..      47     152 .. 0.47
   2 !   27.5   0.6   1.2e-09   2.6e-07       3     160 ..     397     555 ..     395     618 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.2
   TIGR00437 177 evkeklkelkqklkkglevleglleeraleiekiekelaevvkkesesk 225
                 e ke  + +++  +   e++e+++ee+ + +e+ e  ++  ++ e+e+ 
  MMETSP1061-20121228|1153_1  67 EIKEAETAPTEASEASGEDVEMVVEEEEMVVEEEEMVVEGDASEEEETV 115
                 3333333332222333333333333333333333333333322222222 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 1.2e-09
   TIGR00437   3 pNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkgedieivDlPGiYsLttvsldEkvardyllnekadLvvnvvdasn.leRnLylt.lQllelgiplilalNlvde..Aekkgiri...deekLeerLGvpvv..plsatkgrgieelkkaideekaiklve 160
                    GK++l+ a+ +++++ g   G+T  ++  ++e+ g+ i+++D+PG  ++t++ +           + +d+v+ vv a   ++ + + + +   ++g+pl++a+N++d+  A  + +     + + L e+ G  v+  ++sa++++++++l ++i  + +i+ ++
  MMETSP1061-20121228|1153_1 397 VDHGKTSLLDAIRNTRVTAGEAGGITQHIAAYEVEHDGQSITFIDTPGHAAFTDMRE--------RGANITDIVILVVAADDgVKQQTADSiVCARQAGVPLVVAINKIDLeaADPNKVMTeltQYDILTEEFGGDVLssQISAKQKTNLDDLLDKIMLQAEIQDLK 555
                 567*************************************************99876........23456899*****99863555555441445689************7323333333211245789*****99983359**************99544444332 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   2.7   2.9e-07   6.2e-05      73     149 ..     426     498 ..     385     514 .. 0.83
   2 ?   -3.9   0.0       2.6   5.7e+02     282     321 ..     554     593 ..     549     639 .. 0.80
   3 ?   -4.0   0.0       2.8     6e+02     293     356 ..     804     866 ..     786     872 .. 0.62

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.9e-07
   TIGR00490  73 anvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvd 149
                 a      e e +   i +idtpgh  f     r     d +i+vv+a +gv  qt   +  a +  v  v+ ink+d
  MMETSP1061-20121228|1153_1 426 AAY----EVEHDGQSITFIDTPGHAAFTDMRERGANITDIVILVVAADDGVKQQTADSIVCARQAGVPLVVAINKID 498
                 433....3344455799***********************************************************9 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2.6
   TIGR00490 282 lncdpegplavvitkivvdkhagevavgrlysgaikkgse 321
                 l+++p+    +++ +  ++   g va++ +  g++k g+ 
  MMETSP1061-20121228|1153_1 554 LKANPDRNAEAFVVEANIETGLGTVATSLVKKGTLKVGDI 593
                 5677777778888889999999999999999999998863 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 2.8
   TIGR00490 293 vitkivvdkhagevavgrlysgaikkgsevylvdskakariqqvgvymgpervevdeipagniv 356
                  + ++     +g++a +r   g ++kg +v ++   +k   ++    +   + e+d i +gn +
  MMETSP1061-20121228|1153_1 804 TVQEVFNIGGTGNIAGSRCTDGILRKGGNVRVMRG-DKILTETSIKTLRNFKAETDLIESGNEC 866
                 44555555668999999999999999999876543.3333333333444556666666666665 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.3   0.00013     0.028       3     106 ..     391     505 ..     390     546 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00013
   TIGR02528   3 imliGsvgcGkttLtqaLkgeeikykk....tqaveykd........kaiDtPGeylenrryYsaLlvtaadadvivlvqsatdeesllspg..fasifak.eviglvtkidlaeadke 106
                 + ++G+v+ Gkt+L +a++++ + +      tq +  ++        + iDtPG       +       a  +d+++lv  a+d  ++ ++   + +  a  + +  + kidl  ad +
  MMETSP1061-20121228|1153_1 391 VTIMGHVDHGKTSLLDAIRNTRVTAGEaggiTQHIAAYEvehdgqsiTFIDTPGH----AAFTDMRERGANITDIVILVVAADDGVKQQTADsiVCARQAGvPLVVAINKIDLEAADPN 505
                 579********************98653344776543321111122346899995....333333334455568999999999976665554002222333466667899999766543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.80u 0.15s 00:00:00.95 Elapsed: 00:00:00.64
# Mc/sec: 1829.29
//
Query:       MMETSP1061-20121228|1156_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 464.83
//
Query:       MMETSP1061-20121228|1157_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.20
# Mc/sec: 1623.47
//
Query:       MMETSP1061-20121228|1158_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.0   0.4      0.039   11.0   0.3    1.5  1  TIGR03275 methan_mark_8: putative methanogenesis marker protein 8


Domain annotation for each model (and alignments):
>> TIGR03275  methan_mark_8: putative methanogenesis marker protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   9.4e-06     0.039     159     223 ..      38     103 ..      10     110 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.4e-06
   TIGR03275 159 ielgykkiavtvadaedakeirelekeldldvliiavhvtGidee.daeelvkyaDivtsCaskai 223
                 ++ +++ +  +v++ e a +  + e + d d++++av   G      ++el +  Div + a +++
  MMETSP1061-20121228|1158_1  38 LQNNRDIVMAAVKNHEWALRYASEELKNDRDIVMAAVKKNGEALCfASKELKNDKDIVLAAAKNVV 103
                 3456777888999999999999999999*************98752678899999***99887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 563.49
//
Query:       MMETSP1061-20121228|1161_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|1159_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|1164_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.4   0.8        1.6    6.6   0.0    2.1  2  TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein
        5.1    3.3  13.9        5.3    3.2   9.6    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR02953  penta_MxKDx: pentapeptide MXKDX repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2    0.0014         3      30      61 ..      20      41 ..      10      51 .. 0.47
   2 ?    6.6   0.0   0.00078       1.6      33      52 ..      59      78 ..      47      81 .] 0.56

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0014
   TIGR02953 30 kdamkkDaMkkdamakdaMskDamkkdamkkd 61
                +          d++++d+ s D  ++d+  +d
  MMETSP1061-20121228|1164_1 20 E----------DSVSEDSGSEDSVSEDSSDED 41
                2..........333333333333333332222 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00078
   TIGR02953 33 mkkDaMkkdamakdaMskDa 52
                 ++D+ ++d++++d+ s D 
  MMETSP1061-20121228|1164_1 59 TSEDSVSEDSVSEDSVSEDS 78
                44555555555555555554 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   9.6    0.0026       5.3      30      96 ..       3      69 ..       1      80 [. 0.76

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0026
   TIGR01642 30 drsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleed.srrrSRdrirrrsrsssseskerrrsr 96
                d++  R R  +d + s  +ds + d  ++ds s +s +ed  rrr  d +++ s +s+se    + s 
  MMETSP1061-20121228|1164_1  3 DEDGAR-RRNQDAEPSTSEDSVSEDSGSEDSVSEDSSDEDgARRRNQDAEPSTSEPSTSEDSVSEDSV 69
                566667.5556899*****************9887665551699999999999999999877666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.52
# Mc/sec: 205.60
//
Query:       MMETSP1061-20121228|1166_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.9   5.6       0.26    9.4   0.6    2.1  2  TIGR02641 gvpC_cyan_rpt: gas vesicle protein GvpC repeat


Domain annotation for each model (and alignments):
>> TIGR02641  gvpC_cyan_rpt: gas vesicle protein GvpC repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2   0.00028       1.1      18      32 ..       5      19 ..       1      20 [. 0.76
   2 ?    9.4   0.6   6.3e-05      0.26      12      31 ..      31      50 ..      30      51 .. 0.95

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00028
   TIGR02641 18 ERlAQAkaQaqqLhq 32
                 + A Ak++a++L+q
  MMETSP1061-20121228|1166_1  5 DQRAAAKESAESLSQ 19
                555669999999998 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 6.3e-05
   TIGR02641 12 LsqTaqERlAQAkaQaqqLh 31
                L+++++E+ + Ak++a++L+
  MMETSP1061-20121228|1166_1 31 LAEIKKEQREAAKESAESLS 50
                89****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1061-20121228|1162_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1410.92
//
Query:       MMETSP1061-20121228|1168_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   13.0   0.0      0.018   12.1   0.0    1.4  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
  ------ inclusion threshold ------
      0.034   10.5   0.0      0.047   10.0   0.0    1.2  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   8.8e-06     0.018      72     145 ..      23      96 ..       4     149 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.8e-06
   TIGR00064  72 elkeekkpnvillvGvNGvGKTttiaKlakllkkegkkvllaAgDTFrAaAieQlee.wakrlgvkvikqkegad 145
                 ++ ++  ++ ++l+G    GKTt+ia+l+ +lk++g +v+ a ++ +   A + ++  + +  g++ + q++  d
  MMETSP1061-20121228|1168_1  23 NNGSKVPLYKFILTGGPCGGKTTAIARLSFFLKERGFEVI-ACSEVYTILASNGMSLdFYSTEGMDTVIQNSVLD 96 
                 3333444455778888889******************975.6666555555554442133444555555555555 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   2.3e-05     0.047     166     183 ..      33      50 ..       2      58 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.3e-05
   TIGR01447 166 slitGGPGTGKTttvarl 183
                 +++tGGP  GKTt +arl
  MMETSP1061-20121228|1168_1  33 FILTGGPCGGKTTAIARL 50 
                 699**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1285.32
//
Query:       MMETSP1061-20121228|1172_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|1171_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 989.92
//
Query:       MMETSP1061-20121228|1175_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 563.95
//
Query:       MMETSP1061-20121228|1175_2  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 539.43
//
Query:       MMETSP1061-20121228|1176_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 615.95
//
Query:       MMETSP1061-20121228|1177_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-92  305.3   0.0      8e-92  305.1   0.0    1.0  1  TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
    3.7e-22   76.9   0.0    4.7e-22   76.6   0.0    1.1  1  TIGR01334 modD: modD protein
     0.0049   14.0   0.0      0.015   12.4   0.0    1.7  2  TIGR00693 thiE: thiamine-phosphate pyrophosphorylase
     0.0097   12.3   0.0      0.013   11.9   0.0    1.1  1  TIGR00284 TIGR00284: dihydropteroate synthase-related protein


Domain annotation for each model (and alignments):
>> TIGR00078  nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.1   0.0   7.8e-95     8e-92       2     269 .]      33     305 ..      32     305 .. 0.94

  Alignments for each domain:
  == domain 1    score: 305.1 bits;  conditional E-value: 7.8e-95
   TIGR00078   2 lkealreDvgkedittealvkeeekaeaslvakeegvlaGlevaeevfeelegveveelvk...dGee..leage.vvaelegdarslLlaERvaLNllqrlsgiAtatrklvealretn..vkiadTRKttPglrlleKyavrvGGgdnHRldLsdavliKdNHiaaagsvekavkraraalsfalkievEvesleeaeealeagadiilLDNmkpeeikeavellkekapsvlvEaSGgitldnveeyaetgvdvisvgalthsvkvlDlslki 269
                 ++ +l++D+++ d+++  lv ++e+++a+l++k++gv+aG++++++vf  l g++ve++ +   +Ge+  ++  +  +a ++g++r++L +ER+aLN+l+r+sg+At +r+++e++r+      +a+TRKttPg+r++eKy+++vGG ++HRldLs++v++KdNHi+a gs+ekavk ar+a++f++kievE++sleea ea++agadi++LDN++p+++k+ +e+ k+k+p+vlvEaSGgit++++ +y ++ vd++s g lt+ ++ +D+slki
  MMETSP1061-20121228|1177_1  33 IQGWLADDIPSFDVGG--LVVGTEEKKAKLLMKSAGVFAGKPFFQHVFDLL-GCKVEWQDDvaiEGEYkdINGQKvCLAIVTGPVRDILRGERTALNTLSRCSGVATLSRNALERARGLGweGYVAGTRKTTPGFRIVEKYGLLVGGVATHRLDLSQMVMLKDNHIWACGSIEKAVKLARQAAGFSQKIEVECQSLEEAIEAATAGADIVMLDNFEPNQLKKDAETFKSKFPNVLVEASGGITTETMPDYLCEYVDIVSQGKLTQGYPCVDFSLKI 305
                 788************9..89999999*************************.78888875433478752266666456789*************************************998899******************************************************************************************************************************************************97 PP

>> TIGR01334  modD: modD protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   4.6e-25   4.7e-22      10     259 ..      35     286 ..      28     291 .. 0.82

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 4.6e-25
   TIGR01334  10 dlllediqrGdlttralgiedqpaeiefkardegivsgvsvaakllkklglsi....dvavkeGsraeaGslllea..kgsadklhqgWkavqsvleWsaGvadytdkmvalakkisPaavvactrkaiPltrklaskavlaaGGlihraglsetllvfanhrtllsdnedisgaitrlkqqaP.ekkitveadtlkqalavlradPdilqldkftpqqvkelaellklldknitlavaGGinkenvaeylelGidl 259
                   l +di   d+    +g e+++a++   ++ +g+ +g    ++++  lg ++    dva++   +   G+++  a   g   ++ +g +++ + l   +Gva++  + +  a+    ++ va trk+ P+ r +    +l +G   hr +ls+ +++  nh         i++a++  +q a   +ki ve ++l++a+++++a  di+ ld f p+q+k+ ae  k+  +n+ + ++GGi +e++ +yl   +d+
  MMETSP1061-20121228|1177_1  35 GWLADDIPSFDVGGLVVGTEEKKAKL--LMKSAGVFAGKPFFQHVFDLLGCKVewqdDVAIEGEYKDINGQKVCLAivTGPVRDILRGERTALNTLSRCSGVATLSRNALERARGLGWEGYVAGTRKTTPGFRIVEKYGLLVGGVATHRLDLSQMVMLKDNHIWACG---SIEKAVKLARQAAGfSQKIEVECQSLEEAIEAATAGADIVMLDNFEPNQLKKDAETFKSKFPNVLVEASGGITTETMPDYLCEYVDI 286
                 55666676667666666666666654..4567788888777666666666554222144554444556787765552267788899999999*********************************************************************987766...9*****99999886479***************************************************************9666655 PP

>> TIGR00693  thiE: thiamine-phosphate pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.37   3.8e+02     129     163 ..      15      50 ..      10      62 .. 0.62
   2 !   12.4   0.0   1.5e-05     0.015      81     178 ..     199     287 ..     180     289 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.37
   TIGR00693 129 tstKkdkkavvglelleeiaakal..eipvvaIGGit 163
                 t+t +d  +++  + l+++ + +l  +ip++ +GG+ 
  MMETSP1061-20121228|1177_1  15 TATQTD-FSALLPQNLDQVIQGWLadDIPSFDVGGLV 50 
                 444444.233344555555554444479999999974 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.5e-05
   TIGR00693  81 GqdDlpveevrkllgaeliiGlsvkkleelakaaaegadYigvGpifptstKkdkkavvglelleeiaakaleipvvaIGGitlenveevlkagvdgv 178
                 G  +  v+ +r+  g +  i + +++lee+ +aa++gad + + ++ p + Kkd+         e++++k +++ v a GGit+e++++ l++ vd v
  MMETSP1061-20121228|1177_1 199 GSIEKAVKLARQAAGFSQKIEVECQSLEEAIEAATAGADIVMLDNFEPNQLKKDA---------ETFKSKFPNVLVEASGGITTETMPDYLCEYVDIV 287
                 77788999**********************************************4.........4456666777888999999999999888887776 PP

>> TIGR00284  TIGR00284: dihydropteroate synthase-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.3e-05     0.013     195     237 ..     200     244 ..     184     268 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.3e-05
   TIGR00284 195 kvkekvkialdll..dspvsvdteslkelieavkaGaslvlsvda 237
                  +++ vk a++++   + + v+ +sl+e+iea  aGa++v+  + 
  MMETSP1061-20121228|1177_1 200 SIEKAVKLARQAAgfSQKIEVECQSLEEAIEAATAGADIVMLDNF 244
                 577889999988767799********************9986543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 1095.15
//
Query:       MMETSP1061-20121228|1178_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 1125.57
//
Query:       MMETSP1061-20121228|1179_1  [L=682]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-199  661.7   0.0   1.9e-199  661.3   0.0    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    3.2e-78  261.2   0.4    5.6e-78  260.4   0.3    1.3  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.7e-71  239.3   0.1    1.9e-71  239.2   0.1    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.4e-39  134.0   0.6    2.3e-39  133.3   0.4    1.2  1  TIGR03689 pup_AAA: proteasome ATPase
    4.9e-06   23.2   0.1    7.8e-06   22.5   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    3.6e-05   20.8   0.0    8.2e-05   19.6   0.0    1.6  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    5.4e-05   20.1   1.0     0.0011   15.8   0.0    2.4  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    0.00014   18.8   0.0    0.00042   17.3   0.0    1.8  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00019   18.4   0.1    0.00036   17.5   0.0    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0012   15.0   0.0      0.016   11.2   0.0    2.1  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
     0.0013   16.1   0.0     0.0025   15.2   0.0    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0017   14.7   0.5     0.0029   13.9   0.4    1.2  1  TIGR00763 lon: ATP-dependent protease La
     0.0082   14.0   0.3      0.025   12.4   0.1    1.8  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  661.3   0.0  6.2e-202  1.9e-199       8     494 ..     151     650 ..     145     652 .. 0.95

  Alignments for each domain:
  == domain 1    score: 661.3 bits;  conditional E-value: 6.2e-202
   TIGR01241   8 sllplilllvglfllflrqakga..ggsr....ifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPee...dklllskkellakiavllgGrvaeeiifg..evttGasnDlkkatkiaramvtelGmseklgavayeeeeeevllgkelk.kekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkel 494
                 sl++   l++glf+l + +++g+  gg +    + ++gkska++++  ++ vtf+dvaG+d ak el+e+vdfLk+p+ +tk G +iP+Gv+l GpPGtGktLlakavaGeagvpf+sisGs+fvemfvGvGasrvrD+f qakknaPciifiDeiDavGr+rg g gggndereqt+nq+LvemDGf++n g+i +aatnr d+LD+aLlrPGrfDr+v+vd+Pd+kgr+ il vha+ + l+++vdl++++rrtpG+sGa+l+nl+neaa+ aar +k+++  +e++ avdr ++Glekk+   ++k+k++vayheaGha+vg+lv++ d+v+k++iipr + a+G+t++ P+e   ++ ++s + +++++av+lgGr+aeeii+g  +vttGasnD++++++ia++mvt++Gms+k+ga+ ++e + + ++ + +   ++ + ++  ke++eev+r+++++y  ak+il e+++  e l+++Lle+e++++ee++ +
  MMETSP1061-20121228|1179_1 151 SLIFPAALFAGLFFLSRGSQQGGmpGGPTgmggMGGFGKSKAEIQMVPDTGVTFDDVAGCDGAKLELAEVVDFLKQPEAYTKNGCRIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDIFGQAKKNAPCIIFIDEIDAVGRQRGGGQGGGNDEREQTINQILVEMDGFDGNPGIITIAATNRIDILDQALLRPGRFDRKVTVDLPDFKGRTRILGVHARGKPLEPDVDLEAISRRTPGYSGAQLENLMNEAAISAARLDKSSIGWDEIDRAVDRLMVGLEKKGGNPESKSKEMVAYHEAGHAVVGALVPDYDQVQKISIIPRSNgAGGLTFFAPQEgrlESGMYSIQYFESQLAVALGGRLAEEIIYGedKVTTGASNDIQQVANIANQMVTKWGMSDKVGAICIDEMGMSPMQMMMMGgANSLWGDKKLKEVEEEVERLVNNSYLLAKKILLENMDLFEELTQALLEREVVSAEEFQMM 650
                 45555789999**99998888765533322344678********************************************************************************************************************************************************************************************************************************************************************************************************************9**********977788899************************999***********************************88876666655541566789**************************************************9976 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.4   0.3   1.8e-80   5.6e-78     118     364 .]     201     446 ..     190     446 .. 0.97

  Alignments for each domain:
  == domain 1    score: 260.4 bits;  conditional E-value: 1.8e-80
   TIGR01242 118 evsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekvl 364
                  v+++d+ G +    e+ e+v++ lk+pe + + G   p+Gv+l GppGtGktllakava e+   fi + gse+v+ ++G Ga+ vr++f  ak+ ap+iifideida++ +r   + +G+ e ++t+ q+l e+dGfd    +  iaatnr+dild allrpGrfdr + v lpd++Gr +il++h+r   l +dvdle++++ t G sGa+l  ++ ea + a r +++ +  +++ +av++++
  MMETSP1061-20121228|1179_1 201 GVTFDDVAGCDGAKLELAEVVDF-LKQPEAYTKNGCRIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDIFGQAKKNAPCIIFIDEIDAVGRQRGGGQGGGNDEREQTINQILVEMDGFDGNPGIITIAATNRIDILDQALLRPGRFDRKVTVDLPDFKGRTRILGVHARGKPLEPDVDLEAISRRTPGYSGAQLENLMNEAAISAARLDKSSIGWDEIDRAVDRLM 446
                 499*****************997.9***************************************************************************************************************************************************************************************************************************976 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.2   0.1     6e-74   1.9e-71     449     688 ..     201     441 ..     191     652 .. 0.90

  Alignments for each domain:
  == domain 1    score: 239.2 bits;  conditional E-value: 6e-74
   TIGR01243 449 nvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadls..eavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleae 688
                  v ++d+ g + +k el e v++ lk++e++ k g r p+gv+l gppgtgktllakava e+g  fi++ g e +  +vg    ++r+if +a++ ap+iif+deida+  +rg  ++  +   ++ +nq+l e+dg++ n +++ iaatnr dild allrpgr+dr + v  pd + r  i+ +h+r  pl  dvdle ++++t gy+ga++e ++ eaa++a r    s+  + ++  
  MMETSP1061-20121228|1179_1 201 GVTFDDVAGCDGAKLELAEVVDF-LKQPEAYTKNGCRIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDIFGQAKKNAPCIIFIDEIDAVGRQRGGGQGggNDEREQTINQILVEMDGFDGNPGIITIAATNRIDILDQALLRPGRFDRKVTVDLPDFKGRTRILGVHARGKPLEPDVDLEAISRRTPGYSGAQLENLMNEAAISAARLDKSSIGWDEIDRA 441
                 589******************98.9*****************************************************************************************9876511557889***************************************************************************************************9977766666666554 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.3   0.4   7.3e-42   2.3e-39     175     378 ..     196     388 ..     189     422 .. 0.88

  Alignments for each domain:
  == domain 1    score: 133.3 bits;  conditional E-value: 7.3e-42
   TIGR03689 175 evPd..vtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGv..ssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyl 378
                  vPd  vt++d+ G d    ++ + v++ ++++e y++ + + P+Gv+l GPPG+Gktl+akava            a   f++i G e+++ +vG    ++r if +a+++a    P ++f+de+d++ r rG G     d     + q+l e+dG +    +i i a+nr d++d a+lrPGr+d k+ ++ Pd ++ + il  + 
  MMETSP1061-20121228|1179_1 196 MVPDtgVTFDDVAGCDGAKLELAEVVDF-LKQPEAYTKNGCRIPRGVILDGPPGTGKTLLAKAVAGE----------AGVPFISISGSEFVEMFVGVGASRVRDIFGQAKKNA----PCIIFIDEIDAVGRQRGGGQggGNDEREQTINQILVEMDGFDGNPGIITIAATNRIDILDQALLRPGRFDRKVTVDLPDFKGRTRILGVHA 388
                 57876699******99888888888886.6789*******************************964..........3457***************************99876....****************9876225687788899**************************************************999998775 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.5e-08   7.8e-06     313     412 ..     239     337 ..     196     372 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.5e-08
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvek...rdgakddfGleaidtLLarlEn 412
                 + ++l GPPGtGkt +A++va   aG+        + +s ++++  ++g  + +  ++  +a      ++F+DE+ a+  +   ++g ++d   + i+++L+ ++ 
  MMETSP1061-20121228|1179_1 239 RGVILDGPPGTGKTLLAKAVAGE-AGVPF------ISISGSEFVEMFVGVGASRVRDIFGQAKKNapcIIFIDEIDAVGRQrggGQGGGNDEREQTINQILVEMDG 337
                 45899***************975.78765......46899*******************9987643339********987744445667899999********985 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.6e-07   8.2e-05     120     198 ..     241     313 ..     209     335 .. 0.82
   2 ?   -3.5   0.0       2.7   8.5e+02     157     193 ..     408     440 ..     401     444 .. 0.65

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.6e-07
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarks 198
                 ++l Gp G+Gktlla+++a e  vpf     + + e  +vG     +     +    + +k    ii+ideid + r+ 
  MMETSP1061-20121228|1179_1 241 VILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEM-FVGVGASRV-----RDIFGQAKKNAPCIIFIDEIDAVGRQR 313
                 5688**********************87777777775.777665544.....3444556788899**********9975 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.7
   TIGR00382 157 GyvGedvenillkllqaadydvekaekGiiyideidk 193
                 Gy G  +en++    ++a +   + +k  i  deid+
  MMETSP1061-20121228|1179_1 408 GYSGAQLENLM----NEAAISAARLDKSSIGWDEIDR 440
                 77777777755....4555555666666666777775 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.5e-06    0.0011      46     103 ..     237     292 ..     232     297 .. 0.89
   2 ?    2.6   0.1     0.034        11     248     263 ..     298     313 ..     291     340 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.5e-06
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvda 103
                 +P+ +++ G+ G Gkt +a+ +a  a++Pfi +  + f e+ +vG    s vrd+  +
  MMETSP1061-20121228|1179_1 237 IPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEM-FVGVG-ASRVRDIFGQ 292
                 6999************************************7.88875.4778887665 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.034
   TIGR00390 248 sGiifideidkiakkg 263
                   iifideid + ++ 
  MMETSP1061-20121228|1179_1 298 PCIIFIDEIDAVGRQR 313
                 579********98764 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.3e-06   0.00042      33      95 ..     241     311 ..     229     313 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.3e-06
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpalek......pgDlaailtaleeg..dvlfiDeihrlsk 95 
                 v+l GPPG Gkt lak +a e gv    +sg ++        ++ +  i+ + +++   ++fiDei ++ +
  MMETSP1061-20121228|1179_1 241 VILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEmfvgvgASRVRDIFGQAKKNapCIIFIDEIDAVGR 311
                 7999********************99999998764312222233444444444443116999999998876 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.1e-06   0.00036      45     142 ..     241     340 ..     203     384 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.1e-06
   TIGR02881  45 mifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideayslar......GGekdfGkeaidtlvkemedkre 142
                 +i+ G PGtGkt +a+ +a    e +v     +i +  +++v  ++G  a ++r++    kk    ++fide  ++ r      GG  d   ++i++++ em+    
  MMETSP1061-20121228|1179_1 241 VILDGPPGTGKTLLAKAVAG---EAGV----PFISISGSEFVEMFVGVGASRVRDIFgqaKKNAPCIIFIDEIDAVGRqrgggqGGGNDEREQTINQILVEMDGFDG 340
                 6899***********99984...7777....5899********************86333677789******87775433322233445555677777777765444 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   5.1e-05     0.016     468     526 ..     219     277 ..     209     281 .. 0.80
   2 ?    1.3   0.0     0.052        16     264     289 ..     284     309 ..     277     323 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.1e-05
   TIGR02639 468 alvkaikrsraGlkeenkPvgsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                 ++v+ +k+ +a  k+  +     +  Gp G Gkt lak++a e gv ++ +  se+ e 
  MMETSP1061-20121228|1179_1 219 EVVDFLKQPEAYTKNGCRIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEM 277
                 56666666666666655533445779******************************985 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.052
   TIGR02639 264 erlkevveeiekeedailfiDeihti 289
                  r++++  + +k+   i+fiDei ++
  MMETSP1061-20121228|1179_1 284 SRVRDIFGQAKKNAPCIIFIDEIDAV 309
                 799999999999999********986 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   7.8e-06    0.0025      22      56 ..     239     273 ..     216     288 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 7.8e-06
   TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                 + v l GP GtGkt la +va + + P + + G +
  MMETSP1061-20121228|1179_1 239 RGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSE 273
                 56889**************************9986 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.4   9.3e-06    0.0029     356     437 ..     241     314 ..     221     319 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 9.3e-06
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgssvr 437
                 ++l GPPG GKt lak++A   +  f+ +s  G + v         +vG    ++ + + ++k++ P +i++DEiD +g++  
  MMETSP1061-20121228|1179_1 241 VILDGPPGTGKTLLAKAVAGEAGVPFISIS--GSEFVE-------MFVGVGASRVRDIFGQAKKNAPcIIFIDEIDAVGRQRG 314
                 5689**********************8666..655443.......577877889999999999999945679****9997654 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1     8e-05     0.025       3      30 ..     241     268 ..     240     277 .. 0.90
   2 ?   -2.2   0.0       2.4   7.6e+02      55      68 ..     436     449 ..     410     455 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8e-05
   TIGR02173   3 ivisGpPGsGkttvakilaeklslklis 30 
                 +++ GpPG+Gkt +ak +a + ++ +is
  MMETSP1061-20121228|1179_1 241 VILDGPPGTGKTLLAKAVAGEAGVPFIS 268
                 6889*******************99998 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.4
   TIGR02173  55 keiDkkiDrkikei 68 
                 +eiD+ +Dr ++  
  MMETSP1061-20121228|1179_1 436 DEIDRAVDRLMVGL 449
                 799*****988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.51u 0.21s 00:00:00.72 Elapsed: 00:00:00.51
# Mc/sec: 1765.03
//
Query:       MMETSP1061-20121228|1180_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-66  220.6  10.2    1.1e-37  127.7   0.6    3.4  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    5.2e-41  139.0   3.0    1.3e-13   48.6   0.0    4.2  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    7.6e-37  124.6   0.0    1.2e-12   45.6   0.0    4.3  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      9e-36  121.2   3.7    1.1e-10   39.3   0.0    4.4  4  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.9e-33  113.1  14.3    7.9e-11   39.1   0.0    4.9  6  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    4.9e-33  112.3   6.6    2.7e-13   47.6   0.3    4.1  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.3e-31  107.4   1.4    7.2e-13   46.3   0.3    4.3  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.9e-31  106.9   0.7    1.6e-11   41.0   0.0    4.1  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.2e-30  103.8   0.0    2.9e-11   41.3   0.0    4.2  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.1e-30  103.2   0.1    1.7e-10   38.6   0.0    4.2  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    4.3e-28   96.2   0.1    7.6e-12   43.1   0.0    4.3  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    4.9e-27   92.7   0.2    1.3e-08   32.4   0.0    4.3  4  TIGR01978 sufC: FeS assembly ATPase SufC
    8.3e-27   92.0   0.1    1.3e-08   32.5   0.0    4.3  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.4e-26   90.7   0.8    2.2e-06   25.4   0.0    4.3  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.1e-26   89.1   0.2    3.6e-09   33.5   0.0    4.2  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    8.8e-26   88.8   0.1    5.4e-09   33.9   0.0    4.2  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.8e-25   87.6   2.0    3.5e-10   37.6   0.7    4.1  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    2.3e-25   87.4   1.5    1.3e-09   35.8   0.1    4.3  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    2.9e-25   87.1   0.0    1.9e-10   38.7   0.1    4.1  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      3e-25   87.0   2.9    1.1e-10   39.1   0.3    4.3  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    5.6e-25   86.2   3.0    1.5e-07   29.2   0.0    4.2  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    7.2e-25   85.7   0.1    6.7e-08   30.1   0.0    4.2  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    7.4e-25   85.7   0.3    1.2e-08   32.4   0.0    4.3  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
      1e-24   85.1   0.3      9e-08   29.6   0.0    5.2  5  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.4e-24   83.9   0.1    3.1e-05   21.3   0.0    4.2  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      3e-23   80.5   1.7    7.2e-10   36.4   0.0    4.6  5  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    3.6e-22   76.9   0.1    5.9e-07   27.1   0.0    4.4  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    7.1e-22   75.7   0.5    1.7e-08   31.9   0.0    4.6  5  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.5e-21   74.0   0.1    1.3e-05   22.6   0.0    4.3  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.3e-20   71.2   0.2    1.9e-08   31.1   0.0    3.8  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    2.1e-20   70.9   1.5    1.7e-06   25.2   0.0    4.1  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    3.9e-20   69.8   0.1    4.8e-05   20.0   0.0    4.2  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    4.6e-20   70.0   0.0    4.7e-07   27.5   0.0    4.3  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    9.1e-20   68.3   0.5    7.7e-07   25.6   0.0    4.3  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.3e-19   67.2   0.1    1.8e-05   21.2   0.0    4.6  5  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    5.7e-19   66.2   0.1    7.1e-09   33.0   0.0    4.3  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    6.3e-19   66.4   0.0      1e-05   23.0   0.0    4.1  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.2e-18   63.9   0.1    7.2e-05   19.3   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.8e-18   63.4   0.1    4.2e-07   26.4   0.0    4.2  4  TIGR00958 3a01208: antigen peptide transporter 2
    1.9e-17   61.2   0.1      9e-08   29.6   0.0    4.1  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      2e-17   60.5   0.1      6e-06   22.5   0.0    4.5  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.2e-17   61.1   0.0    3.3e-07   27.6   0.0    4.7  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    5.5e-17   59.6   0.1      4e-06   23.9   0.0    4.3  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.3e-16   58.3   1.1      7e-06   23.1   0.0    4.4  5  TIGR01288 nodI: nodulation ABC transporter NodI
    3.4e-16   56.7   0.1    8.5e-06   22.3   0.0    4.2  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    8.6e-16   55.3   0.3     0.0023   14.3   0.0    4.2  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.1e-15   54.1   0.5    0.00022   16.6   0.0    4.0  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.4e-15   54.7   0.3     0.0003   17.2   0.0    4.2  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    6.3e-15   52.6   1.0    6.8e-05   19.4   0.0    4.0  4  TIGR00955 3a01204: pigment precursor permease
    4.8e-14   49.9   0.5    5.2e-06   23.5   0.0    4.3  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.2e-12   44.7   1.1    3.8e-05   19.9   0.0    3.8  4  TIGR00630 uvra: excinuclease ABC subunit A
    2.4e-11   39.8   0.0    2.2e-06   23.4   0.0    3.5  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    7.8e-10   34.9  19.3    5.2e-09   32.2   0.0    5.6  6  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    8.2e-10   35.7   0.1    0.00033   17.2   0.0    3.5  4  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.5e-09   34.8   0.1    6.7e-05   19.4   0.0    3.4  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    2.4e-09   33.0   0.8     0.0013   14.0   0.0    3.6  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.6e-08   32.2   0.0      0.018   12.4   0.0    3.5  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    7.1e-08   27.6   2.2    0.00063   14.4   0.0    3.3  3  TIGR01257 rim_protein: rim ABC transporter
    2.6e-07   26.6  17.8    8.1e-07   25.0   0.0    5.2  6  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    1.7e-05   22.5   0.2       0.11   10.0   0.0    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain
    3.7e-05   20.9   0.7      0.017   12.1   0.0    2.7  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
    0.00031   16.3   8.4    0.00071   15.2   0.0    3.5  3  TIGR00606 rad50: rad50
    0.00039   17.5   1.6        0.2    8.5   0.0    3.7  3  TIGR00611 recf: DNA replication and repair protein RecF
    0.00094   16.2   0.0      0.081    9.8   0.0    2.4  2  TIGR00750 lao: LAO/AO transport system ATPase
     0.0014   16.0   0.0       0.15    9.4   0.0    2.5  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0022   15.7   0.0        1.8    6.3   0.0    2.9  2  TIGR00150 HI0065_YjeE: ATPase, YjeE family
     0.0037   13.6   0.2     0.0037   13.6   0.2    3.8  5  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
     0.0045   15.1   0.3        1.8    6.6   0.0    2.6  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0058   12.7   2.0       0.48    6.3   0.1    2.3  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
     0.0058   13.5   0.0       0.13    9.1   0.0    2.2  2  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0083   13.7   0.0      0.099   10.2   0.0    2.5  2  TIGR00041 DTMP_kinase: thymidylate kinase
  ------ inclusion threshold ------
      0.017   12.6   0.1        2.1    5.8   0.0    2.4  2  TIGR00455 apsK: adenylylsulfate kinase
      0.023   11.1   0.0      0.044   10.2   0.0    1.4  1  TIGR00368 TIGR00368: Mg chelatase-like protein
      0.024   12.1   0.2        1.3    6.4   0.0    2.5  2  TIGR03263 guanyl_kin: guanylate kinase


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   0.6   1.9e-39   1.1e-37      16     299 ..      92     402 ..      80     414 .. 0.76
   2 !   97.0   0.1     4e-30   2.2e-28     337     518 ..     483     672 ..     478     681 .. 0.88
   3 ?   -1.5   0.2       2.7   1.5e+02     288     324 ..     731     766 ..     715     784 .. 0.75

  Alignments for each domain:
  == domain 1    score: 127.7 bits;  conditional E-value: 1.9e-39
   TIGR03719  16 pkkeilkdislsffpgakiGvlGlnGaGkstllkim......aGvdk.......efeGealaaegikvGyleqePkldeektvrenveegvaeikea...ldrfee.isaklaee......dadfdklleeqaklqekidaadawdldskleiamdalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey.kGtvvavthdryfldnvaeWileldrGeg.ipykg.nysswleqkekrleqeekeeaarkkalkkeleWvrs.spka.rqakskarlaryeelase 299
                 +  ++l +i     p +k G++G nG+Gkstllk +       G +        +++G +++ ++ +vGyl+q     ++ tv ++ +++++e+++a   l+r e+ ++++ ++       d ++++ l+   + +++ + ++++  ++++ + ++ l   +  ++ ++lsGG + rv++++lll+kP l lldeP nhld  + aWl ++lk y +G++v+vthd  +l n++e i e+  G +   yk+  y ++l+qk++r    + e +++  + +k + +v +  + a + + +++r+++ e+++++
  MMETSP1061-20121228|1180_1  92 GGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAIlndlgnYGAEDavlndylDVDGSITIGTKQQVGYLKQTAVSGSTLTVFDEAASAMTEVATArsnLRRAEQgVESAATDTdsdtdsDTELERALQTLDTARDRYERVGGYVQEQEVATLLKGLGFTNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYdAGAMVLVTHDIELL-NACEHIAEITSGGSlQIYKScTYDQYLQQKRDRAYAAAAEYEKNLEKAAKLQAFVDKyGASAtKASAAQSRVKQIEKMKAQ 402
                 56789999*************************9653333331322222222346789999999*********************99998888766511155555524444444433333333444455555566677788889999********************************************************************559********9987.789******9876515687538***********877766655555555555666654244441445568899999999876 PP

  == domain 2    score: 97.0 bits;  conditional E-value: 4e-30
   TIGR03719 337 liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqs.rdalddnktvweeisdGldllklgk...vevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefa...Gcavvishdrwfldria.thilafegdsk 518
                 li+d+++++ +g  + + GpnGaGk+tl++ + g+    +G+    + +kl+   q   ++ld+++   + +++ +     g+   ++ ++r+ +g ++++G    ++vg+lsGGe+ rv la+   + +n+ llde +n ldve ++al e l ++    G++vvishd+ f +++  th+l+  +++ 
  MMETSP1061-20121228|1180_1 483 LISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDRVEDSNLKLGVFTQDlAQELDPKRRAVDLVTEHARSGADGDlyvTDEQARTVLGGLGLRGDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGdgkGSIVVISHDKAFCEQVGfTHVLTITDEGT 672
                 899***************************************999999***9988862689****99888887755554444411045579****************************************************************9854449***************66****9987765 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 2.7
   TIGR03719 288 arlaryeelaseesekkeetaeivippgerlGdkvie 324
                  r+a+ e+l ++++ek +  +e ++++g  +G+ v +
  MMETSP1061-20121228|1180_1 731 KRIAKIESLVEQKEEKMAALDEEMMANGSDVGKLV-D 766
                 59999999999999999999999999999999865.3 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.2   1.1e-10   6.1e-09     292     423 ..      53     185 ..      27     224 .. 0.66
   2 !   48.6   0.0   2.3e-15   1.3e-13     437     527 ..     242     328 ..     219     330 .. 0.82
   3 !   22.5   0.0   1.9e-07   1.1e-05     333     378 ..     478     524 ..     475     542 .. 0.85
   4 !   32.0   0.0   2.4e-10   1.3e-08     458     523 ..     593     659 ..     576     665 .. 0.91

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1.1e-10
   TIGR02857 292 aaaealvevldaeeqpeaekapltaaass................slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepte.Gailvnga.elaeldadswrkqiawvpQkPllfeg.tvaenirlarkda 423
                 a+a++ +++ d                                  +l+l +v v+  g++  l++++ +vep+++ +lvGa G+GKstllk++l  +  ++ +  ++n+  +++   +   ++q+++++Q+++  ++ tv ++ + a  + 
  MMETSP1061-20121228|1180_1  53 ASAASTTATSD-----------------VdvdvvgegrrgdskgaALRLVDVAVSRGGNT-LLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGNYGaEDAVLNDYlDVDGSITIGTKQQVGYLKQTAVSGSTlTVFDEAASAMTEV 185
                 44444444444.................0222222233333333489*******999999.*******************************99877655404445566546666666788999****99987544325666555443333 PP

  == domain 2    score: 48.6 bits;  conditional E-value: 2.3e-15
   TIGR02857 437 ldelvkalpqgle.teiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkiv 527
                 +++l+    +gl  t++ +   +LSgG + R++ A++ll++ +l llDEP  hLD+++ a + + l+ +  g+ ++lv+H+ +l++++++i 
  MMETSP1061-20121228|1180_1 242 VATLL----KGLGfTNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAGA-MVLVTHDIELLNACEHIA 328
                 33333....3433288999********************************************9999977776.5678**********9996 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 1.9e-07
   TIGR02857 333 grk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGa 378
                 g++ + +++++l++++g ++ + G+ GaGK+tll+ l g+++  +G 
  MMETSP1061-20121228|1180_1 478 GESvELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGD 524
                 55567899*******************************99766664 PP

  == domain 4    score: 32.0 bits;  conditional E-value: 2.4e-10
   TIGR02857 458 gLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegr.tvllvaHrlalaela 523
                 +LSgG++ R+aLA   l++++l llDE   hLD e  +++ e l +  +g+ ++++++H++a  e++
  MMETSP1061-20121228|1180_1 593 QLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKgSIVVISHDKAFCEQV 659
                 79**********************************************877367899****998875 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.3e-05    0.0018       3      83 ..      86     164 ..      84     194 .. 0.79
   2 !   45.6   0.0   2.2e-14   1.2e-12     112     205 ..     239     329 ..     229     330 .. 0.86
   3 !   18.1   0.0   5.7e-06   0.00031      12      44 ..     482     514 ..     477     532 .. 0.90
   4 !   39.7   0.0   1.3e-12   7.3e-11     114     200 ..     572     659 ..     566     665 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.3e-05
   TIGR03608   3 niskkfkdkeilkklslkiekGelvaivGesGsGKstlLn.ilgllekkdsgkvilegkekaklkskkaskllreklgylFq 83 
                 ++  + + +++l++++ ++e  +   +vG  G+GKstlL  il  l ++   + +l++       + + +  +++++gyl q
  MMETSP1061-20121228|1180_1  86 DVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKaILNDLGNYGAEDAVLNDYLDV---DGSITIGTKQQVGYLKQ 164
                 67777888999****************************63778888888888888877632...23333445566666655 PP

  == domain 2    score: 45.6 bits;  conditional E-value: 2.2e-14
   TIGR03608 112 ekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvie 205
                 e+++ ++l+ +g++ +l ++  elsgG + Rv+ a++ll +++l l DEP   LD+  r+ + ++lk    +g  +++vtHd e+ ++++++ e
  MMETSP1061-20121228|1180_1 239 EQEVATLLKGLGFT-NLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYD-AG-AMVLVTHDIELLNACEHIAE 329
                 56667777777765.578899*****************************************99998764.44.57899**********99866 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 5.7e-06
   TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnil 44 
                 e++++++l+i++G+ + i G  G+GK+tlL  l
  MMETSP1061-20121228|1180_1 482 ELISDIELNIQQGMKILIRGPNGAGKTTLLHTL 514
                 6799**************************877 PP

  == domain 4    score: 39.7 bits;  conditional E-value: 1.3e-12
   TIGR03608 114 kkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaeka 200
                 +  +vl  +gl   k  + + +lsgGek Rvala   lk+s+l l DE    LD +  e++ e+l++  +    i+++ Hd++  e++
  MMETSP1061-20121228|1180_1 572 QARTVLGGLGLrGDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKAFCEQV 659
                 566778888995556678999************************************************************9988875 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.4e-06   0.00024       3      46 ..      84     127 ..      82     189 .. 0.93
   2 !   39.3   0.0   2.1e-12   1.1e-10     105     186 ..     239     317 ..     220     328 .. 0.82
   3 !   26.7   0.1   1.5e-08   8.2e-07      14      56 ..     482     524 ..     477     543 .. 0.89
   4 !   34.4   0.0   6.7e-11   3.7e-09     107     187 ..     572     653 ..     563     664 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.4e-06
   TIGR01189   3 aeelaveRgervlleglsfelaaGealvveGpnGiGKttLLRil 46 
                   ++av+Rg+++ll++++ ++ +     ++G nG GK+tLL+ +
  MMETSP1061-20121228|1180_1  84 LVDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAI 127
                 67899************************************854 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 2.1e-12
   TIGR01189 105 qktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                 +++v + l+ +g ++l+++ + +Ls G + R+++a+Lllsk  l +LDEP   lD+++ + la+ l+ + +  G+++l th 
  MMETSP1061-20121228|1180_1 239 EQEVATLLKGLGFTNLTQT-CDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTY-DA-GAMVLVTHD 317
                 3489999999999999875.899*******************************************975.44.555555553 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 1.5e-08
   TIGR01189  14 vlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGe 56 
                 +l+++++++++ G  + ++GpnG+GKttLL +l G l+  +G 
  MMETSP1061-20121228|1180_1 482 ELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGD 524
                 68999******************************99988885 PP

  == domain 4    score: 34.4 bits;  conditional E-value: 6.7e-11
   TIGR01189 107 tveealekvgLsgled.lpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                 ++ + l  +gL+g +  ++v qLs G k R+ala   l+   l++LDE    lD+e ve l+e+l++  +  G++++ +h +
  MMETSP1061-20121228|1180_1 572 QARTVLGGLGLRGDKAlRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDK 653
                 566777888898765516899******************************************************9999976 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   5.6e-07   3.1e-05     328     382 ..      75     128 ..      36     166 .. 0.83
   2 ?   -1.9   0.1       3.7     2e+02     285     314 ..     177     206 ..     162     240 .. 0.52
   3 !   39.1   0.0   1.4e-12   7.9e-11     453     529 ..     241     317 ..     230     318 .. 0.86
   4 ?   -3.2   0.7       9.1   5.1e+02     194     238 ..     354     398 ..     342     404 .. 0.46
   5 !   29.3   0.0   1.3e-09   7.5e-08     349     393 ..     482     526 ..     475     544 .. 0.86
   6 !   31.0   0.0   3.9e-10   2.1e-08     471     529 ..     593     652 ..     581     653 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.6e-07
   TIGR02868 328 aasekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlalla 382
                   s+ + l+l d++vs+ g+ + l++++  +ep ++  +vGa G+GKstLl++++
  MMETSP1061-20121228|1180_1  75 GDSKGAALRLVDVAVSRGGN-TLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAIL 128
                 334778999*******9998.56****************************9986 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.7
   TIGR02868 285 ealaalpaAaqqltrvraaaeRieevldak 314
                 ea +a++++a +  ++r+a + +e ++ + 
  MMETSP1061-20121228|1180_1 177 EAASAMTEVATARSNLRRAEQGVESAATDT 206
                 344455555555555555554444333332 PP

  == domain 3    score: 39.1 bits;  conditional E-value: 1.4e-12
   TIGR02868 453 wlraLpdGld.tklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                  ++ L +Gl  t+l+++   lSGG + R+ +A+ Ll++  + lLDEP+ hLD  +++ l + L   ++g ++vlvth+
  MMETSP1061-20121228|1180_1 241 EVATLLKGLGfTNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAG-AMVLVTHD 317
                 567778888669****************************************99988877777665555.67889997 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 9.1
   TIGR02868 194 aqlldllegaaelvvaGaleavlaqveeaereltraekraaaaea 238
                 ++ +++ e  ++l  a +l+a+++++ +   ++ +a+ r ++ e+
  MMETSP1061-20121228|1180_1 354 RAYAAAAEYEKNLEKAAKLQAFVDKYGASATKASAAQSRVKQIEK 398
                 333333444444444444444455544444444444444444443 PP

  == domain 5    score: 29.3 bits;  conditional E-value: 1.3e-09
   TIGR02868 349 evlkgvsldlepGervavvGasGaGKstLlallaglldplkGevt 393
                 e +++++l++++G ++ + G+ GaGK+tLl++l g l+ l+G+ +
  MMETSP1061-20121228|1180_1 482 ELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDRV 526
                 37899*********************************9999755 PP

  == domain 6    score: 31.0 bits;  conditional E-value: 3.9e-10
   TIGR02868 471 rlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt.vvlvthr 529
                 +lSGGe+ R+alA   l++ ++ lLDE + hLD+e  e+l e L +  +g+  +v+++h+
  MMETSP1061-20121228|1180_1 593 QLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGsIVVISHD 652
                 69********************************************99999878889997 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.3   2.2e-07   1.2e-05       2      95 ..      82     177 ..      81     229 .. 0.81
   2 !   40.0   0.0     1e-12   5.6e-11     127     212 ..     251     332 ..     234     338 .. 0.82
   3 !   47.6   0.3   4.9e-15   2.7e-13      13     203 ..     480     659 ..     476     674 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.2e-07
   TIGR03873   2 lrlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllap..daGevdlagadlkalsrrararrvalveqdsdaevplsvrdv 95 
                 lrl  v+v++gg +++ ++d  + + +  gl+G nG+Gkstll+ +   l    ++ +v  +  d+ +       ++v  ++q + ++  l+v d 
  MMETSP1061-20121228|1180_1  82 LRLVDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGNygAEDAVLNDYLDVDGSITIGTKQQVGYLKQTAVSGSTLTVFDE 177
                 89999**************************************98876554311456677777888887777777888888888888888887764 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 1e-12
   TIGR03873 127 lssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldg 212
                  ++l +++++ lsGG + rv +a+ l  +P+l lldeP nhld sa+  l + +++   +  ++v+  hd++l  ++c+h+  + +
  MMETSP1061-20121228|1180_1 251 FTNL-TQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTY--DAGAMVLVTHDIELL-NACEHIAEITS 332
                 5555.457899********************************************99..555666678***995.68999975544 PP

  == domain 3    score: 47.6 bits;  conditional E-value: 4.9e-15
   TIGR03873  13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvels.sladrdlstlsGGerqrvhlaralaqeP.klllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasv 203
                 ++ ++ d++++  +G    + GPnG+Gk+tll+ l G l   +G+                 +++ +  qd  +e++ + r +v l     rs   +d    +e ++ +l+  +l  + a r +  lsGGe+ rv la  +a +P +l llde  nhldv+   +l +++++  + +  +vv  hd ++  +v
  MMETSP1061-20121228|1180_1 480 SVELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDRVE-----------DSNLKLGVFTQDLAQELDPK-RRAVDLVTEHARSGADGDLYVTDEQARTVLGGLGLRgDKALRMVGQLSGGEKARVALAM-FALKPsNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKAFCEQV 659
                 6778999********9999****************9999877665332...........33467899999999888866.55777777888999999999999999*******996479*******************7.555552689*************9999999****99999999999*98776554 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.3e-06   0.00024       6      43 ..      95     132 ..      91     237 .. 0.70
   2 !   31.5   0.0   4.2e-10   2.3e-08     107     189 ..     241     320 ..     232     321 .. 0.85
   3 !   46.3   0.3   1.3e-14   7.2e-13       4     187 ..     480     653 ..     478     656 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.3e-06
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllr 43 
                   l++++ +ve  ++ +l+GanG+Gkstll+ +   l 
  MMETSP1061-20121228|1180_1  95 TLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLG 132
                 57999*************************98766555 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 4.2e-10
   TIGR01166 107 rvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdl 189
                  v   l+ ++ ++l  ++++ lsgG + rv+ a  +  +p + lldeP+  ld + +  l++ l+   + G  +v+ thd++l
  MMETSP1061-20121228|1180_1 241 EVATLLKGLGFTNLT-QTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA-GA-MVLVTHDIEL 320
                 566667777777775.6899********************************************98655.54.5677****98 PP

  == domain 3    score: 46.3 bits;  conditional E-value: 1.3e-14
   TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlsea..everrvrealaavdisg.leerpthllsgGekkrvaiagavalrp.dvllldePtagldpaGaeqlleilrklreeGktvvisthdv 187
                  +e +++++l++++g ++ + G+nGaGk+tll++l G+l       ll+G+ ++ s   l    + +        + l   +   d+       G +++    +++ r  l  +++ g  + r + +lsgGek rva+a   al+p ++ llde +  ld + +e l e+l+   +   ++v+ +hd 
  MMETSP1061-20121228|1180_1 480 SVELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLP------LLNGDRVEDSNLKLGVFTQDL-------AQELDPKRRAVDLVTEHARSGADGDlyVTDEQARTVLGGLGLRGdKALRMVGQLSGGEKARVALAM-FALKPsNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDK 653
                 678899*********************************6......566666665555554444433.......3333333333333333333333333111233444556666665413458899************95.6777725679***********************99988999999995 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   5.1e-07   2.8e-05     479     550 ..      93     166 ..      75     171 .. 0.84
   2 !   41.0   0.0     3e-13   1.6e-11     597     677 ..     254     333 ..     242     353 .. 0.89
   3 !   16.7   0.0   6.7e-06   0.00037     480     522 ..     481     523 ..     477     539 .. 0.87
   4 !   23.8   0.0   4.8e-08   2.7e-06     603     668 ..     593     659 ..     584     675 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 5.1e-07
   TIGR03375 479 ekaaLknvslkikpGekvaiiGriGsGKstllklllglyep..teGsvlldgvdirqidpadlrrnigyvpqdv 550
                  ++ L+n+  +++p +k +++G +G+GKstllk +l+ +     e +vl d +d++       ++++gy++q +
  MMETSP1061-20121228|1180_1  93 GNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGNygAEDAVLNDYLDVDGSITIGTKQQVGYLKQTA 166
                 5677999**************************9987554312567899**********************975 PP

  == domain 2    score: 41.0 bits;  conditional E-value: 3e-13
   TIGR03375 597 igerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkG 677
                 +++  ++LSgG +  v++a++ll++p++ lLDEP+++lD+s+ + l + Lk++ a+  +vlvtH  +lL+ +++i  +++G
  MMETSP1061-20121228|1180_1 254 LTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAG-AMVLVTHDIELLNACEHIAEITSG 333
                 5677789*******************************************988776.79**************99866655 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 6.7e-06
   TIGR03375 480 kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteG 522
                  + +++++l+i+ G k+ i G +G+GK+tll+ l g +   +G
  MMETSP1061-20121228|1180_1 481 VELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNG 523
                 5678999************************999998776666 PP

  == domain 4    score: 23.8 bits;  conditional E-value: 4.8e-08
   TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrtslLelv 668
                 +LSgG +  vala   lk  +++lLDE +++lD +  e l e L+++   +  +v+++H +++ e v
  MMETSP1061-20121228|1180_1 593 QLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDgKGSIVVISHDKAFCEQV 659
                 7************************************************55579999**99887766 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   0.00013    0.0071      13      54 ..      92     133 ..      81     204 .. 0.70
   2 !   37.4   0.0   7.9e-12   4.4e-10     115     205 ..     239     326 ..     231     333 .. 0.85
   3 !   41.3   0.0   5.3e-13   2.9e-11      14     207 ..     480     664 ..     477     671 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 0.00013
   TIGR02673  13 agveaLkdvslkiekgeflfltGasGaGkttllklllgaekp 54 
                 +g + L++++ ++e+ +   l+Ga G Gk+tllk +l+ +  
  MMETSP1061-20121228|1180_1  92 GGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGN 133
                 456789****************************99876544 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 7.9e-12
   TIGR02673 115 qkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkk 205
                 +++v ++l+ +g+++  +++ +elsgG q Rv+ a+ +++kP+l l DeP   lD +  + + + lk+  ++G+ v ++thd el+++ ++
  MMETSP1061-20121228|1180_1 239 EQEVATLLKGLGFTNL-TQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKT-YDAGAMV-LVTHDIELLNACEH 326
                 68899999*9999875.667899********************************9988877777765.5677655.679*****998765 PP

  == domain 3    score: 41.3 bits;  conditional E-value: 5.3e-13
   TIGR02673  14 gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDf..kllkdrtvlenvalalevrgkke.eeiqkrveevlelvgle.dkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelverv.kkrv 207
                 +ve ++d++l+i++g  + + G+ GaGkttll+ l g++   +G+       v+   +++l     k+gv  qD   +l ++r +++ v    +   + +   ++++ ++vl  +gl+ dka  +  +lsgGe+ Rva+a   ++  +l l De    lD e  e + ++l++  +   +++v +hd++++e+v  ++v
  MMETSP1061-20121228|1180_1 480 SVELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGD------RVE---DSNL-----KLGVFTQDLaqELDPKRRAVDLVTEHARSGADGDlYVTDEQARTVLGGLGLRgDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKAFCEQVgFTHV 664
                 578899***************************999888876664......333...3332.....6899999963257788888888876665444333145678999********758999*******************99999***************************999999999********99843444 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00031     0.017      19      54 ..      95     131 ..      90     143 .. 0.85
   2 !   38.6   0.0   3.1e-12   1.7e-10     122     217 ..     242     333 ..     236     337 .. 0.84
   3 !   19.3   0.0   2.5e-06   0.00014      16      53 ..     479     516 ..     474     526 .. 0.91
   4 !   27.1   0.0     1e-08   5.8e-07     119     209 ..     570     660 ..     564     674 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00031
   TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllh.llggl 54 
                 ++l++++ ++e     ++vG+ G Gkstll  +l  l
  MMETSP1061-20121228|1180_1  95 TLLSNIDWRVEPKSKWGLVGANGCGKSTLLKaILNDL 131
                 5799*************************97355555 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 3.1e-12
   TIGR02211 122 akellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdg 217
                  ++ll+ +g+ + +++   elsGG + rv+ a+ l++kP+l l deP  +ld+++   +    + l++    a+++vthd+el +  ++  e++ g
  MMETSP1061-20121228|1180_1 242 VATLLKGLGFTN-LTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLA---NYLKTYDAGAMVLVTHDIELLNACEHIAEITSG 333
                 556777777764.778899*********************************98776655...566777889*************99999888766 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 2.5e-06
   TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllgg 53 
                 +++e++++++l+i++g  + i G  G+Gk+tllh+l g
  MMETSP1061-20121228|1180_1 479 ESVELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRG 516
                 568999*****************************977 PP

  == domain 4    score: 27.1 bits;  conditional E-value: 1e-08
   TIGR02211 119 kerakellekvgle.krinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkld 209
                 +e+a ++l  +gl  +++ +  ++lsGGe+ rva+a   ++  +l l de   +ld +  +++ e+l +     + +++v++hd+ + +++ 
  MMETSP1061-20121228|1180_1 570 DEQARTVLGGLGLRgDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGD-GKGSIVVISHDKAFCEQVG 660
                 5778888888888537888899**************9888888999**********************9976.5679**********99864 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.4e-13   7.6e-12      20     217 ..      96     333 ..      89     336 .. 0.69
   2 !   20.2   0.0   1.4e-06   7.7e-05      19      55 ..     482     519 ..     474     559 .. 0.76
   3 !   24.4   0.0   7.5e-08   4.1e-06     119     203 ..     570     654 ..     561     669 .. 0.90

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.4e-13
   TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgke...........lkgasekelvqvrrkiGyifqa..hnllesltaeqnvrmale.lkeklsakeakakaeelleavglee..............................rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedG 217
                 +l +i+ ++ep     l G+ G+Gk tll  i         e  vl++             +++   + ++v  ++  +f +    + e+ ta+ n+r a + ++++ + +++ ++++  le  +                                 +l ++ ++lsgG + rv++a+ l ++P+l l deP   ld+++   + + l++     + +++lvthd  +l+ ++ i ++ +G
  MMETSP1061-20121228|1180_1  96 LLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGNYGAEDAVLNDYldvdgsitigtKQQVGYLKQTAVSGSTLTVFDEaaSAMTEVATARSNLRRAEQgVESAATDTDSDTDSDTELERALQ-TldtardryervggyvqeqevatllkglgftNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKT---YDAGAMVLVTHDIELLNACEHIAEITSG 333
                 678888888888888899999999999987663322222333344443312223322222222222333444444445565311456677777777777655244445555555555555544321.1345778999999999999999999999999999*************************************9888877777765...5678999*************99998776 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.4e-06
   TIGR02982  19 qvlfdinleiepgeiviltGpsGsGkttll.tligglr 55 
                 +++ di+l+i++g  +++ Gp G+Gkttll tl g+l 
  MMETSP1061-20121228|1180_1 482 ELISDIELNIQQGMKILIRGPNGAGKTTLLhTLRGTLP 519
                 5789*************************955667764 PP

  == domain 3    score: 24.4 bits;  conditional E-value: 7.5e-08
   TIGR02982 119 kakaeelleavgl.eerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr 203
                  ++a+ +l  +gl +++  ++  +lsgG k rva+a    +  +l l de    ld +  +++ e+l +    +g +i+++ hd+ 
  MMETSP1061-20121228|1180_1 570 DEQARTVLGGLGLrGDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKG-SIVVISHDKA 654
                 5789999999999557889999**************99999999*************************999888.578899*985 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.7e-05   0.00097       1      49 [.      82     130 ..      82     232 .. 0.92
   2 !   17.6   0.0   7.6e-06   0.00042     145     209 ..     261     323 ..     238     337 .. 0.91
   3 !   20.9   0.0   7.9e-07   4.4e-05      13      49 ..     481     517 ..     477     543 .. 0.92
   4 !   32.4   0.0   2.4e-10   1.3e-08     145     219 ..     594     668 ..     571     678 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.7e-05
   TIGR01978   1 LkikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                 L++ d+ vs   +++L++++  v++     ++G+nG GkstL k++  +
  MMETSP1061-20121228|1180_1  82 LRLVDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILND 130
                 567899999999********************************99764 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 7.6e-06
   TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllel 209
                  sGG + r    +l+l +P+la+LDe    lD  a   +a+ ++++     a++++th  +ll++
  MMETSP1061-20121228|1180_1 261 LSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYD--AGAMVLVTHDIELLNA 323
                 79*********************************999999999886..5799*******99987 PP

  == domain 3    score: 20.9 bits;  conditional E-value: 7.9e-07
   TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                  e++++++l++++G    i GpnG+Gk tL ++l g 
  MMETSP1061-20121228|1180_1 481 VELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGT 517
                 67899****************************9985 PP

  == domain 4    score: 32.4 bits;  conditional E-value: 2.4e-10
   TIGR01978 145 fsGGekkrneilqlalleP.klaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvll 219
                  sGGek r  +  +  l+P +l +LDe+   lDv+ + +++e+++++ + + ++++i+h + + e++  ++v  ++
  MMETSP1061-20121228|1180_1 594 LSGGEKARVALA-MFALKPsNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKAFCEQVGFTHVLTIT 668
                 7*******9865.666777379*****************************************9999877776554 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.1e-05    0.0028      13      54 ..      92     134 ..      81     197 .. 0.78
   2 !   32.5   0.0   2.3e-10   1.3e-08     124     210 ..     240     322 ..     216     347 .. 0.81
   3 !   19.1   0.0   2.7e-06   0.00015      15      51 ..     481     517 ..     477     557 .. 0.81
   4 !   20.0   0.0   1.4e-06   7.9e-05     124     202 ..     571     650 ..     567     669 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.1e-05
   TIGR02315  13 ngkqalknvnleikkGelvaviGlsGaGkstllrsi.nrlvei 54 
                 +g++ l n++  +++    +++G  G Gkstll++i n l + 
  MMETSP1061-20121228|1180_1  92 GGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAIlNDLGNY 134
                 378899****************************863666654 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 2.3e-10
   TIGR02315 124 ekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlak 210
                 ++  +lL+ +g+++l ++ +d+LsGG q Rv+ a+ l+ +p+l l DEP   LD ++   + ++lk+   + g  v+v+ H+++l +
  MMETSP1061-20121228|1180_1 240 QEVATLLKGLGFTNL-TQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTY--DAGAMVLVT-HDIELLN 322
                 555677888888776.578*************************************999999999975..556666654.7777754 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 2.7e-06
   TIGR02315  15 kqalknvnleikkGelvaviGlsGaGkstllrsinrl 51 
                  + + +++l+i++G  + + G+ GaGk+tll+++ + 
  MMETSP1061-20121228|1180_1 481 VELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGT 517
                 56789***************************99765 PP

  == domain 4    score: 20.0 bits;  conditional E-value: 1.4e-06
   TIGR02315 124 ekAlelLervgla.elaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivn 202
                 e+A ++L  +gl  ++a + + qLsGG++ Rva+a   ++ ++l l DE    LD +  + + ++l +    kg +v+++
  MMETSP1061-20121228|1180_1 571 EQARTVLGGLGLRgDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVIS 650
                 5788888999997356777799**************99999*********************999999999999988886 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-05   0.00061       2      49 ..      81     128 ..      80     202 .. 0.86
   2 !   22.3   0.0   3.3e-07   1.8e-05     120     214 ..     238     330 ..     216     346 .. 0.84
   3 !   20.5   0.0   1.2e-06   6.4e-05      15      55 ..     481     521 ..     477     540 .. 0.84
   4 !   25.4   0.0   3.9e-08   2.2e-06     128     219 ..     577     672 ..     566     680 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-05
   TIGR03411   2 iLevedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvit 49 
                 +L++ dv vs +g + l++++ +ve+++   ++G+nG Gk+tll +i 
  MMETSP1061-20121228|1180_1  81 ALRLVDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAIL 128
                 58899***************************************9986 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 3.3e-07
   TIGR03411 120 ekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtv 214
                 ++++++++l+ +g ++  +++  +Ls G + ++  + ll+ +p+l llDeP   + ++ ++  a+ lk+     ++v+v hD+e +++ ++   +
  MMETSP1061-20121228|1180_1 238 QEQEVATLLKGLGFTNL-TQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA-GAMVLVTHDIELLNACEHIAEI 330
                 56677777777777665.567899*******************************************99765.6788899****99987765444 PP

  == domain 3    score: 20.5 bits;  conditional E-value: 1.2e-06
   TIGR03411  15 fkalndlslsveegelrviiGpnGaGkttllDvitGktrpd 55 
                 ++ ++d++l++++g   +i GpnGaGkttll  + G     
  MMETSP1061-20121228|1180_1 481 VELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLL 521
                 66799********9888889************999976555 PP

  == domain 4    score: 25.4 bits;  conditional E-value: 3.9e-08
   TIGR03411 128 leligLe.ekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkela.kersvvvvehDmefvrela..ekvtvlheGk 219
                 l  +gL+ +ka ++ g+Ls G+k ++ ++m+ ++ ++l llDe    +  e  e  +e+l++   ++ s+vv+ hD  f +++   + +t+  eG+
  MMETSP1061-20121228|1180_1 577 LGGLGLRgDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGdGKGSIVVISHDKAFCEQVGftHVLTITDEGT 672
                 555566425667899**********************************************98626789************986435567777776 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0    0.0002     0.011     322     366 ..      85     129 ..      78     176 .. 0.75
   2 !   33.5   0.0   6.5e-11   3.6e-09     446     532 ..     252     337 ..     240     345 .. 0.87
   3 !   15.3   0.0   2.2e-05    0.0012     332     374 ..     482     524 ..     475     533 .. 0.89
   4 !   22.6   0.0   1.3e-07   7.3e-06     454     526 ..     593     665 ..     585     678 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.0002
   TIGR01842 322 vslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvG 366
                 v+++ +++ ++ l +i+ ++++ +  +++G+ g Gks+L + ++ 
  MMETSP1061-20121228|1180_1  85 VDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILN 129
                 556666777899*****************************9975 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 6.5e-11
   TIGR01842 446 teigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdG.alk 532
                 t+++++  +LsgG + R++ a+ l  +P l +LDeP   LD +  + la+ lk+  a   ++v++th ++ll++ ++i+ +  G +l+
  MMETSP1061-20121228|1180_1 252 TNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA--GAMVLVTHDIELLNACEHIAEITSGgSLQ 337
                 78889999*******************************************998765..57799**************9776551554 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 2.2e-05
   TIGR01842 332 ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGs 374
                 + + +i++++++G  + i Gp g+Gk++L ++l G  +  +G 
  MMETSP1061-20121228|1180_1 482 ELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGD 524
                 6789********************************9998885 PP

  == domain 4    score: 22.6 bits;  conditional E-value: 1.3e-07
   TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvl 526
                 +LsgG + R+aLa        l +LDe    LD e   al + l +    k ++vvi+h  +  e+v    vl
  MMETSP1061-20121228|1180_1 593 QLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKAFCEQVGFTHVL 665
                 79***********98889999***************************************9999988643333 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0     0.001     0.057      15      52 ..      94     130 ..      82     203 .. 0.70
   2 !   33.9   0.0   9.8e-11   5.4e-09     119     206 ..     242     326 ..     233     336 .. 0.80
   3 !   33.4   0.0   1.4e-10     8e-09      19     205 ..     484     660 ..     477     673 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.001
   TIGR00960  15 aelaldnvtvkiekGelvflvGhsGaGkstllklilgi 52 
                 +   l n+  ++e  +   lvG  G+Gkstllk il+ 
  MMETSP1061-20121228|1180_1  94 N-TLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILND 130
                 3.379999999*9999999**************99864 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 9.8e-11
   TIGR00960 119 vsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrk 206
                 v + l+ +G+++   +  ++lsgG q rv+ a+ +++kP+l l deP+  ld+     + + l++   aG  vlv thd++l++  ++
  MMETSP1061-20121228|1180_1 242 VATLLKGLGFTNLT-QTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTY-DAGAMVLV-THDIELLNACEH 326
                 55556666666554.56789*********************************9888888888776.57877776.9*****998776 PP

  == domain 3    score: 33.4 bits;  conditional E-value: 1.4e-10
   TIGR00960  19 ldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqd..fkllsdrtvydnvalalriiGvkgr..eieervsaalekvGlk.dkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskr 205
                 + +++++i++G  + + G+ GaGk+tll+ + g+                 l++ +v     ++G+  qd  ++l  +r ++d v    r  G+ g+   ++e+++++l  +Gl+ dka ++  qlsgGe+ rva+a   ++  +l l de +  ld e  + + e+l +       ++v +hd+ + e+ +
  MMETSP1061-20121228|1180_1 484 ISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLP--------------LLNGDRVEDSNLKLGVFTQDlaQELDPKRRAVDLVTEHAR-SGADGDlyVTDEQARTVLGGLGLRgDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKAFCEQVG 660
                 679999*********************998765433..............2333444444456788888832356677888888876554.6888872246899**********9458999*****************9999999*************************998888888999***9999875 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0    0.0002     0.011       3      47 ..      83     127 ..      81     150 .. 0.85
   2 !   31.1   0.0   5.8e-10   3.2e-08     110     196 ..     239     321 ..     228     351 .. 0.80
   3 !   37.6   0.7   6.4e-12   3.5e-10      16     180 ..     483     641 ..     478     681 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.0002
   TIGR03864   3 eveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfsll 47 
                  + +++ + g ++ l++++ +v++ +   L+G nG GkstL++ +
  MMETSP1061-20121228|1180_1  83 RLVDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAI 127
                 55677788899999***************************9643 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 5.8e-10
   TIGR03864 110 eerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdev 196
                 e++++++l+ lg+++  ++   eL+GG + rv  a+ ll +P+l LlDe++  LD ++ra l +++++    +g  vL  th ++ +
  MMETSP1061-20121228|1180_1 239 EQEVATLLKGLGFTN-LTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYD--AGAMVL-VTHDIELL 321
                 567788888888876.456799*******************************************99865..444444.35555444 PP

  == domain 3    score: 37.6 bits;  conditional E-value: 6.4e-12
   TIGR03864  16 alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveq.nl.ryhaaLhGlsra..eaeerieealarlgla.eraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvr 180
                  ++d++l++++g  + + GpnGaGk+tL+  l + +   +g+       ++++      +lGv  q+ + +ld   ++ +l + ha   G       + e+ +++l  lgl+ ++a   v +L+GG++ rv +a   l   +l LlDe +  LD+e  +al e + +   
  MMETSP1061-20121228|1180_1 483 LISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGD------RVEDS----NLKLGVFTQDLAQELDPKRRAvDLvTEHA-RSGADGDlyVTDEQARTVLGGLGLRgDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGD 641
                 5789********888888***********9998887776665......23222....2479***9*99888886543324404555.455554312578899999******73677777**************************************9999988776654 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   0.00013     0.007      21      58 ..      91     128 ..      81     132 .. 0.89
   2 !   29.9   0.0   1.4e-09   7.8e-08     118     224 ..     230     330 ..     208     356 .. 0.81
   3 !   35.8   0.1   2.3e-11   1.3e-09      25     230 ..     482     674 ..     477     691 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 0.00013
   TIGR02769  21 kqrkavldnvslsleeGetvallGrsGaGkstlarlll 58 
                 ++ +++l+n++  +e     +l+G  G+Gkstl + +l
  MMETSP1061-20121228|1180_1  91 RGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAIL 128
                 667899***************************99876 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 1.4e-09
   TIGR02769 118 ltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvl 224
                 ++++    +++ +a ll+ +++   +l +   +lsGG   r++ a+ l  +P l +lde    ld+  +a + + lk        a++++thd++l +  +++++ +
  MMETSP1061-20121228|1180_1 230 YERVGGYVQEQEVATLLKGLGF--TNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYD---AGAMVLVTHDIELLNA-CEHIAEI 330
                 5666666788899999997766..5689999**************************************99888777654...4599********9875.5555444 PP

  == domain 3    score: 35.8 bits;  conditional E-value: 2.3e-11
   TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralaveP.klivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqk..faqrvlvldeGqiv 230
                 +++++++l++++G+ + + G  GaGk+tl + l G               l  l+++     + ++ +  qd    ++p++ +   ++e  r   + d     +++  +l  ++lr +++ ++  qlsGG   r+++a  +a++P +l +lde    ld+    ++ e l +  +  G ++++i+hd    ++  f++ + + deG + 
  MMETSP1061-20121228|1180_1 482 ELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGT--------------LPLLNGDRVEDSNLKLGVFTQDLAQELDPKRRAVDLVTEHARSGADGDLYVTDEQARTVLGGLGLRGDKALRMVGQLSGGEKARVALAM-FALKPsNLYLLDEVSNHLDVECVEALSEVLSDWGDGKG-SIVVISHDKAFCEQvgFTHVLTITDEGTLK 674
                 56899***********************98887653..............34455555566666789999*************************9999999999999*****************************95.79999458889998888999888888888888887777.7899****9998873356777788888874 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   3.2e-06   0.00018      10      47 ..      91     128 ..      82     141 .. 0.87
   2 !   22.9   0.0   2.3e-07   1.3e-05     100     212 ..     237     346 ..     226     351 .. 0.78
   3 !   38.7   0.1   3.3e-12   1.9e-10      15     209 ..     483     680 ..     479     689 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 3.2e-06
   TIGR03740  10 fkkqavvnnvslkvkknsvygllGpnGaGkstllkllt 47 
                  + +++++n++ +v+ +s +gl+G nG+Gkstllk + 
  MMETSP1061-20121228|1180_1  91 RGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAIL 128
                 5677899****************************874 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 2.3e-07
   TIGR03740 100 lpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiG.iiseGklkyekkidkde 212
                 ++e+++  +lk ++++n + ++++++s G + r+  a  ll kP l +ldeP+n ld      l + +k++   G  v+++  i  e+ + ++hi  i s G l+  k+   d+
  MMETSP1061-20121228|1180_1 237 VQEQEVATLLKGLGFTNLT-QTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA-GAMVLVTHDI--ELLNACEHIAeITSGGSLQIYKSCTYDQ 346
                 6788999999999998876.67999*******************************************99975.5555555444..4444455554155667777666665555 PP

  == domain 3    score: 38.7 bits;  conditional E-value: 3.3e-12
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdlente.kkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevell..adhiGiiseGklkyekkid 209
                 ++++++l++++     + GpnGaGk+tll  l G l   +G+ + d++       +++   ++      +l +++        l + +++   vl  ++l+ ++  + ++q+s G k r+ +a+  l+  +l +lde +n ld   ++ l e++  + +   ++++ sh  +  e++  +  + i  eG+lk+e++  
  MMETSP1061-20121228|1180_1 483 LISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDRVEDSNLKLGVFTQDLAQELDPKRRAVDLVTEHARSGADGDLYVTDEQARTVLGGLGLRGDKaLRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKAFCEQVgfTHVLTITDEGTLKLEQRDA 680
                 68899****999999999*******************9999988777766667777888888777777777777777777778899**************976516889***********************************************9876666666677655555542177889999*****999865 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0046      0.25       9      38 ..      97     126 ..      92     190 .. 0.85
   2 !   32.9   0.0   1.6e-10     9e-09     101     201 ..     238     334 ..     216     418 .. 0.75
   3 !   39.1   0.3     2e-12   1.1e-10       7     202 ..     482     673 ..     478     784 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0046
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikm 38 
                 + +++ +ve  + +gl+G nG GK+t++k 
  MMETSP1061-20121228|1180_1  97 LSNIDWRVEPKSKWGLVGANGCGKSTLLKA 126
                 5689999999****************9974 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1.6e-10
   TIGR01188 101 aeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGk 201
                 +e+ ++ ll+ + +++ + ++  ++sgG + r++ a  l+++P+++ LDEP   LD  +r+ + ++++     g +++l th++e  +  ++++a i  G 
  MMETSP1061-20121228|1180_1 238 QEQEVATLLKGLGFTNLT-QTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA-G-AMVLVTHDIELLN-ACEHIAEITSGG 334
                 567778888888888765.57899******************************************987654.4.5677899998776.589998777763 PP

  == domain 3    score: 39.1 bits;  conditional E-value: 2e-12
   TIGR01188   7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtar........vaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadk..ladrvaiidkGki 202
                 + + +++l++++g  + + GPnGAGKtt+++ L + l+  +G  +        v+  D+ +e d  Rr + +v+++a    d          g+ly     +++e+a+ +l  + l  ++a + v+++sgG + r+ la+  ++  +++ LDE    LD++  +a+ +++++  + + +i++ +h+    ++  ++  ++i d+G++
  MMETSP1061-20121228|1180_1 482 ELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDRVedsnlklgVFTQDLAQELDPKRRAVDLVTEHARSGAD----------GDLY-----VTDEQARTVLGGLGLRgDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKAFCEQvgFTHVLTITDEGTL 673
                 56789***************************99888766664211111111244555555555555555555544433222..........4444.....57889999*******648999*********************999******************************99******99654444113445555555554 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0012     0.068       9      56 ..     110     164 ..     103     207 .. 0.73
   2 !   28.9   0.0   3.2e-09   1.8e-07      95     183 ..     243     327 ..     231     333 .. 0.84
   3 !   14.5   0.1   8.2e-05    0.0045       2      35 ..     490     523 ..     489     537 .. 0.84
   4 !   29.2   0.0   2.8e-09   1.5e-07     107     174 ..     587     654 ..     565     680 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0012
   TIGR03771   9 lgllGpnGaGkttllrailgli.......kvakGsvkvagkssrkgrreiGyvpq 56 
                  gl+G nG Gk+tll+ail  +       +v +  + v+g  +   ++++Gy+ q
  MMETSP1061-20121228|1180_1 110 WGLVGANGCGKSTLLKAILNDLgnygaedAVLNDYLDVDGSITIGTKQQVGYLKQ 164
                 59****************9754111111112233445566555555566666655 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 3.2e-09
   TIGR03771  95 adalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrv 183
                 a  l+   +t+l+ ++  elsGG + rv  a+ l  kpsl lldep   ld  ++  l++ +++   +  a++++thd+ e +++c+ +
  MMETSP1061-20121228|1180_1 243 ATLLKGLGFTNLT-QTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTY--DAGAMVLVTHDI-ELLNACEHI 327
                 5556677777776.5789******************************************99976..556889999*97.456666655 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 8.2e-05
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakG 35 
                 ++++G  + + GpnGaGkttll ++ g ++  +G
  MMETSP1061-20121228|1180_1 490 NIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNG 523
                 67888889999*************9998887666 PP

  == domain 4    score: 29.2 bits;  conditional E-value: 2.8e-09
   TIGR03771 107 adrpvGelsGGqrqrvlvaralavkps.lllldepftGldlpsqellvelfeelagegtailmtthdla 174
                 a r vG+lsGG++ rv +a  +a+kps l llde    ld+ + e l e++++  + + +i++ +hd a
  MMETSP1061-20121228|1180_1 587 ALRMVGQLSGGEKARVALAM-FALKPSnLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKA 654
                 6799************9995.7889863779***********************************976 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.6e-05    0.0026       5      97 ..      86     182 ..      82     200 .. 0.77
   2 !   30.1   0.0   1.2e-09   6.7e-08     108     212 ..     239     338 ..     231     347 .. 0.81
   3 !   16.1   0.0   2.4e-05    0.0013      13      48 ..     481     516 ..     477     558 .. 0.82
   4 !   18.7   0.0   3.8e-06   0.00021     126     221 ..     589     687 ..     574     695 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.6e-05
   TIGR00968   5 nvskrfGdfqalddvdlevktGslvallGpsGsGkstllrvi.aGlekpdsGrilleG...rdvtrvkvrdreiGfvfqhyalfkhltvrdniafGl 97 
                 +v+ + G  + l ++d  v+  s  +l+G  G Gkstll++i   l +  +   +l+     d + +   ++++G++ q       ltv+d+ a  +
  MMETSP1061-20121228|1180_1  86 DVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAIlNDLGNYGAEDAVLNDyldVDGSITIGTKQQVGYLKQTAVSGSTLTVFDEAASAM 182
                 56667788899****************************9762578877777777765211344555667889999999999999999999888665 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 1.2e-09
   TIGR00968 108 kakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqv 212
                  + v  ll+ +++++l++   ++lsGG + rv++a+ l  +p + lldep   ld   r  l ++l+        + v+vthd  e l+  ++i+ +  G   q+
  MMETSP1061-20121228|1180_1 239 EQEVATLLKGLGFTNLTQT-CDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA---GAMVLVTHDI-ELLNACEHIAEITSGGSLQI 338
                 5678899999999999876.679********************************8887777777766554...3679*****7.56777788877777665555 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 2.4e-05
   TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrviaG 48 
                 ++ + d++l++++G  + + Gp G+Gk+tll ++ G
  MMETSP1061-20121228|1180_1 481 VELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRG 516
                 56789***************************9988 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 3.8e-06
   TIGR00968 126 rypsqlsGGqrqrvalaralavep.qvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqe..ealevadrivvlekG..kieqvgsaeevyde 221
                 r   qlsGG++ rvala  +a++p ++ llde    ld +  + l + l    d  k + v+++hd++  e +  ++ + + ++G  k+eq ++    +d+
  MMETSP1061-20121228|1180_1 589 RMVGQLSGGEKARVALAM-FALKPsNLYLLDEVSNHLDVECVEALSEVLSDWGDG-KGSIVVISHDKAfcEQVGFTHVLTITDEGtlKLEQRDANPGDWDS 687
                 5568************96.6888825679******************99998776.667788999997224444455666667774445666666555555 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00036      0.02      15      50 ..      92     127 ..      79     198 .. 0.78
   2 !   32.4   0.0   2.2e-10   1.2e-08     112     208 ..     239     330 ..     229     354 .. 0.83
   3 !   17.5   0.0   7.2e-06    0.0004      17      52 ..     481     516 ..     476     530 .. 0.90
   4 !   18.4   0.0     4e-06   0.00022     113     176 ..     571     635 ..     561     654 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00036
   TIGR03265  15 eaftalkdislsvkkgelvclLGPsGCGkttLLrii 50 
                 +  t l++i+  v+      l+G  GCGk+tLL++i
  MMETSP1061-20121228|1180_1  92 GGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAI 127
                 5678899********99****************987 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 2.2e-10
   TIGR03265 112 aerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvm 208
                 ++ v++lL+ +g+++  +     lsGG q rv++a+ l  +P+l LLDeP   LD   r+ L + lk+       + ++vthd e  l  +++i+ +
  MMETSP1061-20121228|1180_1 239 EQEVATLLKGLGFTNLTQT-CDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAG---AMVLVTHDIE-LLNACEHIAEI 330
                 6788899999999887665.689*******************************************999876...45799**975.56666666655 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 7.2e-06
   TIGR03265  17 ftalkdislsvkkgelvclLGPsGCGkttLLriiaG 52 
                 ++ ++di+l++++g  + + GP G GkttLL  + G
  MMETSP1061-20121228|1180_1 481 VELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRG 516
                 67789**************************99877 PP

  == domain 4    score: 18.4 bits;  conditional E-value: 4e-06
   TIGR03265 113 erveelLelvglsgsee.kyPgqlsGGqqqrvaLaralalsP.glLLLDePlsaLDakvrekLree 176
                 e+ +++L  +gl g +  +  gqlsGG + rvaLa   al+P +l LLDe    LD    e L e 
  MMETSP1061-20121228|1180_1 571 EQARTVLGGLGLRGDKAlRMVGQLSGGEKARVALAMF-ALKPsNLYLLDEVSNHLDVECVEALSEV 635
                 566777777888766543789**************74.45551699****9999999988887765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.7e-06   0.00032       5      53 ..      85     131 ..      81     203 .. 0.74
   2 !   29.6   0.0   1.6e-09     9e-08     137     209 ..     253     324 ..     236     358 .. 0.83
   3 ?    0.0   0.0       1.7        95      97     150 ..     337     391 ..     333     402 .. 0.84
   4 !   12.4   0.0   0.00028     0.016      15      51 ..     482     518 ..     478     555 .. 0.85
   5 !   17.5   0.0   8.1e-06   0.00045     136     210 ..     585     660 ..     566     678 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5.7e-06
   TIGR00972   5 knlklfygekealkdvnleikknkvtaliGpsGcGkstllrslnrlndl 53 
                  ++ ++ g ++ l++++  ++ ++  +l+G  GcGkstll+++  lndl
  MMETSP1061-20121228|1180_1  85 VDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAI--LNDL 131
                 567778899999*****************************96..3443 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 1.6e-09
   TIGR00972 137 klkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarv 209
                 +l ++  +LsGG q r++ a+ l  +P + LlDeP+  LD  a + + + ++   +   +v+vth+++  + +
  MMETSP1061-20121228|1180_1 253 NLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTY-DAGAMVLVTHDIELLNAC 324
                 68889999*************************************999999886.56789******9865544 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 1.7
   TIGR00972  97 siydnvayglrlkgikdkkeld.eiveesLkkaalwdevkdklkksalsLsGGqq 150
                  iy+  +y   l++ +d++    +  e++L+kaa  ++  dk  +sa++ s  q 
  MMETSP1061-20121228|1180_1 337 QIYKSCTYDQYLQQKRDRAYAAaAEYEKNLEKAAKLQAFVDKYGASATKASAAQS 391
                 6899999999999989988665156799*******************99998875 PP

  == domain 4    score: 12.4 bits;  conditional E-value: 0.00028
   TIGR00972  15 ealkdvnleikknkvtaliGpsGcGkstllrslnrln 51 
                 e ++d++l+i++ + + + Gp G+Gk+tll++l    
  MMETSP1061-20121228|1180_1 482 ELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTL 518
                 56899***************************97555 PP

  == domain 5    score: 17.5 bits;  conditional E-value: 8.1e-06
   TIGR00972 136 dklkksalsLsGGqqqrlciaralaveP.evlLlDePtsaLDpiatekieeliqeLkkk.ytivivthnmqqaarvs 210
                 dk+ +   +LsGG + r+++a   a++P ++ LlDe +  LD + +e + e++++  +    iv++ h+ ++ ++v 
  MMETSP1061-20121228|1180_1 585 DKALRMVGQLSGGEKARVALA-MFALKPsNLYLLDEVSNHLDVECVEALSEVLSDWGDGkGSIVVISHDKAFCEQVG 660
                 555566678***********9.58999945679**********************97753899999**999888775 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   6.7e-07   3.7e-05       2     104 ..      83     186 ..      82     197 .. 0.77
   2 !   18.0   0.0   5.9e-06   0.00033     129     194 ..     258     320 ..     243     351 .. 0.76
   3 !   21.3   0.0   5.7e-07   3.1e-05      14      56 ..     482     524 ..     477     539 .. 0.89
   4 !   17.8   0.0   6.8e-06   0.00038     126     215 ..     588     678 ..     576     687 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 6.7e-07
   TIGR03410   2 evenlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkp.eervkaGiayvpqGreifpkltveenlelglealk 104
                 ++ ++ v+ g  ++l++++ +ve ++   ++G ng Gk+tllka++  l +   e ++ ++ ++   + +   k+ ++y  q   + ++ltv +    ++++++
  MMETSP1061-20121228|1180_1  83 RLVDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGNYGAEDAVLNDYLDVDGSiTIGTKQQVGYLKQTAVSGSTLTVFDEAASAMTEVA 186
                 6778999999***********************************99887776665555555554443133567788888888888888888777666666554 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 5.9e-06
   TIGR03410 129 gGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldf 194
                   +LsGG q  ++ a+ L+++P l lLDeP++ +  s  + +++ +k+  +    a++lv + +++
  MMETSP1061-20121228|1180_1 258 CDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA---GAMVLVTHDIEL 320
                 568***************************998887776666655554433...355555555555 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 5.7e-07
   TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGe 56 
                 e+++d++l++++g  + + G ng+Gkttll++l g+l+  +G 
  MMETSP1061-20121228|1180_1 482 ELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGD 524
                 6799*********************************999986 PP

  == domain 4    score: 17.8 bits;  conditional E-value: 6.8e-06
   TIGR03410 126 kRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfalela..drylvlerGevvaege 215
                  R  G+LsGG +  +a+a   ++  +l lLDe ++ +    ++ +++v+++  + k+ +i+++ +   f+ +++  + +++ ++G++  e++
  MMETSP1061-20121228|1180_1 588 LRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKG-SIVVISHDKAFCEQVGftHVLTITDEGTLKLEQR 678
                 5899**************9888888899***********************998655.7888888889999985225667788888776655 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00046     0.026      10      96 ..      93     178 ..      85     197 .. 0.71
   2 !   36.4   0.0   1.3e-11   7.2e-10     114     208 ..     244     333 ..     229     405 .. 0.67
   3 !    8.3   0.0    0.0047      0.26      15      85 ..     486     559 ..     479     563 .. 0.66
   4 !   19.2   0.0   2.3e-06   0.00013     127     166 ..     589     628 ..     565     681 .. 0.85
   5 ?   -1.0   0.0       3.1   1.7e+02     289     320 ..     765     797 ..     687     798 .] 0.67

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00046
   TIGR02142  10 gdfeL.dvdlelpgkgvtalFGrsGsGktslirli.aGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenL 96 
                 g++ L ++d +++ k   +l G+ G+Gk++l+++i   L +  +   vl++ +  d++  i     k +vgy  q A   + l+v +  
  MMETSP1061-20121228|1180_1  93 GNTLLsNIDWRVEPKSKWGLVGANGCGKSTLLKAIlNDLGNYGAEDAVLNDYLDVDGSITI---GTKQQVGYLKQTAVSGSTLTVFDEA 178
                 44444368999999999***************98724566666677888888777776533...4578899999998776666666555 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 1.3e-11
   TIGR02142 114 kvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledG 208
                 ++++ Lg  + l+ +  +LsGG + Rv+ ++ lLs+P L l+DeP   LD++ ++ +  yL+   a     +++v H++ e++   +++  +  G
  MMETSP1061-20121228|1180_1 244 TLLKGLGFTN-LTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAG---AMVLVTHDI-ELLNACEHIAEITSG 333
                 3344445555.566889*********************************************99887...489999998.566666777655555 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0047
   TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivld.....gevlqdsrkkiilppekRrvgyvFqeAr 85 
                 d++l+++    + + G  G+Gkt+l++ + G + + +g  v d     g   qd ++   l p++R+v  v  +Ar
  MMETSP1061-20121228|1180_1 486 DIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDRVEDsnlklGVFTQDLAQ--ELDPKRRAVDLVTEHAR 559
                 556666654556788***************977655554332201111344455555..67888888888877765 PP

  == domain 4    score: 19.2 bits;  conditional E-value: 2.3e-06
   TIGR02142 127 RlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekr 166
                 R++g+LsGGek Rva++   L   +L l+De    LD + 
  MMETSP1061-20121228|1180_1 589 RMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVEC 628
                 99*****************************999999765 PP

  == domain 5    score: -1.0 bits;  conditional E-value: 3.1
   TIGR02142 289 pedtsirnvLearvveieese.grvevkleaeg 320
                 ++ t +rnvLe +v+e++e+  +  ++ +e+eg
  MMETSP1061-20121228|1180_1 765 VDLTNARNVLEEEVLELMEEWeELETLVAEMEG 797
                 455789999999999998875355556666665 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.073       4.1      16      44 ..      99     127 ..      83     131 .. 0.83
   2 !   27.1   0.0   1.1e-08   5.9e-07     104     203 ..     237     332 ..     235     342 .. 0.79
   3 !   13.7   0.0   0.00013    0.0074      16      53 ..     486     523 ..     479     557 .. 0.86
   4 !   25.0   0.0   4.9e-08   2.7e-06     115     190 ..     579     654 ..     563     678 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.073
   TIGR01277  16 efdlsveaGervailGesGaGkstllnli 44 
                 + d  ve   +  ++G  G Gkstll+ i
  MMETSP1061-20121228|1180_1  99 NIDWRVEPKSKWGLVGANGCGKSTLLKAI 127
                 5677788888999*************876 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 1.1e-08
   TIGR01277 104 vqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvve 203
                 vq+++v  + + +G +++  +  +elsGG + rv++a+ l+ +  + lldep   ld+  r  +   +k+       +++lvth+++ + a  +   + +
  MMETSP1061-20121228|1180_1 237 VQEQEVATLLKGLGFTNL-TQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTY---DAGAMVLVTHDIELLNACEHIAEITS 332
                 577888889999999986.56789******************999***************98776666654...4567899***9987666544444444 PP

  == domain 3    score: 13.7 bits;  conditional E-value: 0.00013
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasG 53 
                   +l++++G ++ i G+ GaGk+tll  + G l   +G
  MMETSP1061-20121228|1180_1 486 DIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNG 523
                 578***********************999987655555 PP

  == domain 4    score: 25.0 bits;  conditional E-value: 4.9e-08
   TIGR01277 115 qvGi.adylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsls 190
                  +G+ +d   r+ ++lsGG++ rvala   +++  ++llde    ld    e +  +++   d  k ++++++h+  
  MMETSP1061-20121228|1180_1 579 GLGLrGDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGD-GKGSIVVISHDKA 654
                 5565346777999**********************************9876555555555555.5566777888754 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0079      0.44      11      47 ..      92     128 ..      82     164 .. 0.83
   2 ?   -2.3   0.0         8   4.5e+02     149     177 ..     153     182 ..     145     185 .. 0.80
   3 !   16.8   0.0   1.2e-05   0.00065     130     209 ..     245     320 ..     233     332 .. 0.81
   4 !   13.7   0.1    0.0001    0.0058      13      47 ..     481     515 ..     477     538 .. 0.82
   5 !   31.9   0.0     3e-10   1.7e-08     123     213 ..     569     659 ..     530     679 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0079
   TIGR03005  11 geltvldglelevaaGekvaliGpsGsGkstilrilm 47 
                 g  t+l +++  v++  k  l+G  G Gkst+l+ ++
  MMETSP1061-20121228|1180_1  92 GGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAIL 128
                 55689999*************************8654 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 8
   TIGR03005 149 GGqkqrvaiaralalrpk.vllfdevtsal 177
                  G kq+v   +  a++   + +fde++sa+
  MMETSP1061-20121228|1180_1 153 IGTKQQVGYLKQTAVSGStLTVFDEAASAM 182
                 5889999999999998751569******97 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 1.2e-05
   TIGR03005 130 lldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgf 209
                 ll+ +G+++   +   +lsGG + rv+ a+ l  +p + l+de++  ld      + n l+   +    +m+lvth++ +
  MMETSP1061-20121228|1180_1 245 LLKGLGFTNL-TQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA---GAMVLVTHDIEL 320
                 5666666554.445678********************************9998888888776644...479999999865 PP

  == domain 4    score: 13.7 bits;  conditional E-value: 0.0001
   TIGR03005  13 ltvldglelevaaGekvaliGpsGsGkstilrilm 47 
                 + ++ ++el++++G k+ + Gp G+Gk+t+l  l 
  MMETSP1061-20121228|1180_1 481 VELISDIELNIQQGMKILIRGPNGAGKTTLLHTLR 515
                 5667899************************9885 PP

  == domain 5    score: 31.9 bits;  conditional E-value: 3e-10
   TIGR03005 123 aekravelldmvGl.adkadalpaqlsGGqkqrvaiaralalrpk.vllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfaref 213
                 ++++a  +l  +Gl +dka  +  qlsGG+k rva+a  +al+p  + l+dev+  ld e ve + +vl + +  +  ++++++h+  f +++
  MMETSP1061-20121228|1180_1 569 TDEQARTVLGGLGLrGDKALRMVGQLSGGEKARVALAM-FALKPSnLYLLDEVSNHLDVECVEALSEVLSDWGDGK-GSIVVISHDKAFCEQV 659
                 45667777888888679*******************95.8999962779********************9998765.5788899999998765 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00064     0.036      24      56 ..      97     129 ..      90     166 .. 0.85
   2 !   17.4   0.0   9.2e-06   0.00051     148     214 ..     259     323 ..     236     331 .. 0.78
   3 !   17.1   0.0   1.1e-05   0.00063      18      57 ..     478     517 ..     475     533 .. 0.89
   4 !   22.6   0.0   2.4e-07   1.3e-05     103     215 ..     546     659 ..     530     668 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00064
   TIGR02324  24 lkevsleveaGelvalsGksGaGkstllkslya 56 
                 l++++ +ve      l G+ G Gkstllk++ +
  MMETSP1061-20121228|1180_1  97 LSNIDWRVEPKSKWGLVGANGCGKSTLLKAILN 129
                 78899999999999****************974 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 9.2e-06
   TIGR02324 148 atfsGGekqRvniaraliadrPiL.LLdePtasLdaanrkvvvelikeakargaaligifhdeevrel 214
                    sGG + Rv  a+ l++ +P L LLdeP   Ld + r+   + +k   a   a++ + hd e+ ++
  MMETSP1061-20121228|1180_1 259 DELSGGWQMRVSFAKLLLS-KPSLaLLDEPSNHLDRSARAWLANYLKTYDA--GAMVLVTHDIELLNA 323
                 568***************9.6655499************988888876544..577778888766555 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 1.1e-05
   TIGR02324  18 GvklpvlkevsleveaGelvalsGksGaGkstllkslyan 57 
                 G +++ +++++l++++G  + + G+ GaGk tll++l ++
  MMETSP1061-20121228|1180_1 478 GESVELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGT 517
                 6778899****************************99765 PP

  == domain 4    score: 22.6 bits;  conditional E-value: 2.4e-07
   TIGR02324 103 PRvsalevvaepllelGvere..earakakellarlnip.erLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelv 215
                 P+  a+++v+e +++ G++ +   + ++a+++l  l +  ++   +     sGGek Rv +a+  +++  + LLde    Ld    ++  e++++      +++ i hd++  e+v
  MMETSP1061-20121228|1180_1 546 PKRRAVDLVTEHARS-GADGDlyVTDEQARTVLGGLGLRgDKALRMV-GQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKAFCEQV 659
                 666677777777665.5554422566777777777776423433443.589**********************************************************9877666 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   3.4e-10   1.9e-08     458     652 ..      85     330 ..      53     338 .. 0.82
   2 !   27.0   0.0   5.8e-09   3.2e-07     467     518 ..     482     533 ..     478     538 .. 0.92
   3 !    8.2   0.0    0.0027      0.15     583     641 ..     593     654 ..     588     675 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 3.4e-10
   TIGR00954 458 iplvtP.egdvlieeLsfevksGnhlLiiGPnGcGKsslfR.ilgelWPvyg............glltkpeegklFyvPqrPYmslg.tlRdqiiYPdssedfker...................glsdkdLeqiLeevkLe.dlleregg...............wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgi.tllsvshrksLwkyHeylLkl 652
                 +++++   g+ l++++  +v+  ++  ++G nGcGKs l + il +l    +            g  t+ +++++ y+ q    +   t+ d     ++     +                      sd +Le+ L++++   d  er gg               +  +++  d+LsgG + R+++A+l+  kP  a+LDE  + +       l + +k ++  +++ v+h   L++  e++ ++
  MMETSP1061-20121228|1180_1  85 VDVAVSrGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKaILNDLGNYGAedavlndyldvdGSITIGTKQQVGYLKQTAVSGSTlTVFDEAASAMTEVATARSnlrraeqgvesaatdtdsdTDSDTELERALQTLDTArDRYERVGGyvqeqevatllkglgFTNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAgAMVLVTHDIELLNACEHIAEI 330
                 555554257899999999**9999999***********98746777765544999***************************9999899999999888876665556778999******99988666999*********976155666666***************************************************99887777666666666666542455666666666665555555 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 5.8e-09
   TIGR00954 467 vlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegkl 518
                  li+++++++++G+++Li GPnG GK  l  +l +  P+ +g +  +++ kl
  MMETSP1061-20121228|1180_1 482 ELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDRVEDSNLKL 533
                 5999***************************************999998776 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0027
   TIGR00954 583 vLsgGekqRiamARlfyHkP.kfavLDEctsAvsvdvEdklyelakevg...itllsvshrks 641
                  LsgGek R+a+A +f  kP +  +LDE  + + v+  ++l e + + g    +++ +sh k+
  MMETSP1061-20121228|1180_1 593 QLSGGEKARVALA-MFALKPsNLYLLDEVSNHLDVECVEALSEVLSDWGdgkGSIVVISHDKA 654
                 69***********.66677725789*******9999888887777655411145666666665 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.9e-05     0.001       8      62 ..      81     135 ..      75     198 .. 0.75
   2 !   25.2   0.0     3e-08   1.7e-06     117     208 ..     240     325 ..     229     379 .. 0.77
   3 !   23.8   0.1   8.1e-08   4.5e-06      24     200 ..     484     653 ..     478     678 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.9e-05
   TIGR03258   8 GvvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadG 62 
                  ++l ++ v+ g++++l ++   +e+     l+G  G+Gk+tll+a+   +   G
  MMETSP1061-20121228|1180_1  81 ALRLVDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGNYG 135
                 5678889999************************************976665555 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 3e-08
   TIGR03258 117 ervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvlad 208
                 + va  lk +++++ ++    +lsGG q rv++a+ l  +p + lldep   ld   ra + + lk+        +++ vthd +  l   +
  MMETSP1061-20121228|1180_1 240 QEVATLLKGLGFTNLTQ-TCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYD----AGAMVLVTHDIE-LLNACE 325
                 56788888888888765.5689*********************************99999988887765....457889999964.444444 PP

  == domain 3    score: 23.8 bits;  conditional E-value: 8.1e-08
   TIGR03258  24 lddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnya..lfphlkveenvafGlrarkqskaliae.rvadalklvql.sdaaarlpaqlsGGqqqrvalaralvvrpd.vllldeplsaldaqlrasvveelkalhrelpeltvlyvthdr 200
                 + d+ l+i+ G  + + G+ G+Gkttll  + G +    G   v d +         +l++  q+ a  l p+ +  + v+   r+    +  +++ +    l  ++l +d a r+  qlsGG + rvala  ++++p  + llde    ld +  +++ e l    +   + ++++++hd+
  MMETSP1061-20121228|1180_1 484 ISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGD-RVEDSN--------LKLGVFTQDLAqeLDPKRRAVDLVTEHARSGADGDLYVTDeQARTVLGGLGLrGDKALRMVGQLSGGEKARVALAM-FALKPSnLYLLDEVSNHLDVECVEALSEVLSDWGDG--KGSIVVISHDK 653
                 68999************************999876543332.233333........346677776654478999999999888777777666665404444566666658********************96.67777615699**999***99988887777665553..34566666666 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00049     0.027     353     387 ..      94     128 ..      87     210 .. 0.84
   2 !   15.8   0.0   1.6e-05   0.00091     468     550 ..     252     333 ..     222     360 .. 0.83
   3 !   17.6   0.0   4.8e-06   0.00027     355     386 ..     483     514 ..     478     519 .. 0.91
   4 !   20.0   0.0   8.6e-07   4.8e-05     476     534 ..     593     652 ..     581     673 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00049
   TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllelll 387
                 ++ l+++d +v+p  +  lvG  G Gkstll+ +l
  MMETSP1061-20121228|1180_1  94 NTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAIL 128
                 67799**************************9876 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.6e-05
   TIGR02204 468 tllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkG 550
                 t+l +   +LsGG + r++ a+ +l +  + LLde  + Ld  +   + + l++  +g   l + h +  +  +++i+ +  G
  MMETSP1061-20121228|1180_1 252 TNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAGAMVL-VTHDIELLNACEHIAEITSG 333
                 678888899**********************************9999999999988876655.57988888888888877766 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 4.8e-06
   TIGR02204 355 aldgldltvrpGetvalvGPsGaGkstllell 386
                  +++++l++++G ++ + GP GaGk+tll+ l
  MMETSP1061-20121228|1180_1 483 LISDIELNIQQGMKILIRGPNGAGKTTLLHTL 514
                 689**************************977 PP

  == domain 4    score: 20.0 bits;  conditional E-value: 8.6e-07
   TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttl.viahr 534
                 +LsGG k r+a+a   lk +++ LLde  + Ld e  +++ + l    +g+  + vi+h 
  MMETSP1061-20121228|1180_1 593 QLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIvVISHD 652
                 69*********************************************9999876257776 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0037      0.21       2      31 ..      98     127 ..      97     194 .. 0.91
   2 !   27.5   0.0   8.4e-09   4.7e-07     109     199 ..     255     341 ..     222     365 .. 0.81
   3 !   26.7   0.0   1.4e-08   7.9e-07       1     174 [.     484     652 ..     484     659 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0037
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnli 31 
                  ++d +++      l+g  gcgkstll  i
  MMETSP1061-20121228|1180_1  98 SNIDWRVEPKSKWGLVGANGCGKSTLLKAI 127
                 67888888888899************9865 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 8.4e-09
   TIGR01184 109 dkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakigei 199
                  ++ ++lsgg + rv+ a+ l  +p l lldep   ld  +r  l + l   +  +  ++++vthd+ e l  ++ +  +t+g + +i + 
  MMETSP1061-20121228|1180_1 255 TQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKT-Y--DAGAMVLVTHDI-ELLNACEHIAEITSGGSLQIYKS 341
                 456799*************************************99987643.3..3456799****9.57788899999999988888665 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 1.4e-08
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwltvrenialavdavlrdls.....kserreiveehielvglr.eaadkrpeqlsggmkqrvaiaralsirp.klllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                 + d++l+i++g  i + g  g gk+tll  + g   p      l+g ++++   +  v  q+ +       r  + l  +++++ ++     ++e+ + v   +   glr + a + ++qlsgg k rva+a  ++++p +l llde    ld    e l e  l  + + + ++++++hd
  MMETSP1061-20121228|1180_1 484 ISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGT-LP-----LLNGDRVEDSNLKLGVFTQDLA-QELDPKRRAVDLVTEHARSGADgdlyvTDEQARTVLGGL---GLRgDKALRMVGQLSGGEKARVALAM-FALKPsNLYLLDEVSNHLDVECVEALSEV-LSDWGDGKGSIVVISHD 652
                 579*************************999885.34.....6899999887766555556554.344445555555555544433200001333333333333...443134556789************97.5666626889**********999999875.56688999999999999 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00071      0.04     470     503 ..      94     127 ..      79     188 .. 0.81
   2 !   25.6   0.0   1.4e-08   7.7e-07     585     683 ..     252     352 ..     240     363 .. 0.87
   3 !   13.4   0.1   6.8e-05    0.0038     468     502 ..     479     513 ..     476     534 .. 0.91
   4 !   14.0   0.0   4.3e-05    0.0024     592     651 ..     592     652 ..     586     676 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00071
   TIGR01846 470 pevlsnlsldikaGeviGivGpsGsGkstltkll 503
                  ++lsn+   +++    G+vG  G+Gkstl k +
  MMETSP1061-20121228|1180_1  94 NTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAI 127
                 57899*************************9855 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 1.4e-08
   TIGR01846 585 tevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekG...kivesGkheellakeg 683
                 t++++   +lsGG + r++ a+ l+++P + +lde    ld  + a + + l+   +g +++ ++h ++ + a+++i  +  G   +i  s ++++ l+++ 
  MMETSP1061-20121228|1180_1 252 TNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAG-AMVLVTHDIELLNACEHIAEITSGgslQIYKSCTYDQYLQQKR 352
                 567777889*********************************9999999999888777.567899*************999987778999*****9999864 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 6.8e-05
   TIGR01846 468 dspevlsnlsldikaGeviGivGpsGsGkstltkl 502
                 +s e++s+++l+i++G  i i Gp G+Gk+tl + 
  MMETSP1061-20121228|1180_1 479 ESVELISDIELNIQQGMKILIRGPNGAGKTTLLHT 513
                 68899**************************9765 PP

  == domain 4    score: 14.0 bits;  conditional E-value: 4.3e-05
   TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgr.tviiiahr 651
                 ++lsGG + r+ala   ++   + +lde    ld e  +++ + l++   g+  +++i+h 
  MMETSP1061-20121228|1180_1 592 GQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKgSIVVISHD 652
                 68**************9**99***************************9998347778885 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00026     0.014     484     524 ..      92     131 ..      77     173 .. 0.74
   2 ?   -0.5   0.0       1.2        69     610     644 ..     149     184 ..     139     191 .. 0.83
   3 !   21.2   0.0   3.3e-07   1.8e-05     594     698 ..     242     350 ..     235     356 .. 0.84
   4 !   12.5   0.0   0.00015    0.0082     486     520 ..     480     514 ..     474     524 .. 0.90
   5 !   15.0   0.0   2.5e-05    0.0014     610     647 ..     592     629 ..     580     673 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00026
   TIGR01193 484 GygsevledislkikknekitlvGlsGsGkstlakllvkff 524
                 G g+ +l++i+ +++ ++k  lvG  G Gkstl k +++  
  MMETSP1061-20121228|1180_1  92 G-GNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDL 131
                 5.6789*****************************987754 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.2
   TIGR01193 610 ssisgGqkqrla.larallsdskvlildestsnldl 644
                  si+ G kq++  l ++ +s s + ++de++s +  
  MMETSP1061-20121228|1180_1 149 GSITIGTKQQVGyLKQTAVSGSTLTVFDEAASAMTE 184
                 68999****997477899999**********98755 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 3.3e-07
   TIGR01193 594 ieklplGyq.telseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsvakksdkiivldeGk...iieqGshkellke 698
                 +  l +G+  t+l++   ++sgG + r+++a+ lls+  + +lde + +ld      + + l + +  ++++v+h +++ +  ++i  + +G+   i  + ++++ l++
  MMETSP1061-20121228|1180_1 242 VATLLKGLGfTNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAGAMVLVTHDIELLNACEHIAEITSGGslqIYKSCTYDQYLQQ 350
                 555666664499***************************************998888877777788889******************9999952326677788877776 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 0.00015
   TIGR01193 486 gsevledislkikknekitlvGlsGsGkstlakll 520
                 + e+++di+l+i++  ki + G  G+Gk+tl   l
  MMETSP1061-20121228|1180_1 480 SVELISDIELNIQQGMKILIRGPNGAGKTTLLHTL 514
                 56889**************************8765 PP

  == domain 5    score: 15.0 bits;  conditional E-value: 2.5e-05
   TIGR01193 610 ssisgGqkqrlalarallsdskvlildestsnldllte 647
                  ++sgG k r+ala   l +s++++lde++ +ld+   
  MMETSP1061-20121228|1180_1 592 GQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECV 629
                 579*******************************8654 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.057       3.2       1      16 [.     112     127 ..     112     148 .. 0.88
   2 !   33.0   0.0   1.3e-10   7.1e-09      97     185 ..     257     341 ..     231     370 .. 0.86
   3 ?    5.5   0.0     0.029       1.6       2      19 ..     500     517 ..     499     555 .. 0.80
   4 !   17.5   0.0   6.8e-06   0.00038      92     161 ..     585     653 ..     569     682 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.057
   TIGR01187   1 lLGpsGsGkttlLrll 16 
                 l+G+ G+Gk+tlL+ +
  MMETSP1061-20121228|1180_1 112 LVGANGCGKSTLLKAI 127
                 68***********865 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 1.3e-10
   TIGR01187  97 kpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigep 185
                    +lsGG + rv++a+ +  kP + LlDep   LD+  r  + + lk+     G ++vlvthD  e l   + ia + +G  +qi ++
  MMETSP1061-20121228|1180_1 257 TCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA--G-AMVLVTHDI-ELLNACEHIAEITSGGSLQIYKS 341
                 4679********************************************9875..4.699*****6.68899999998888888887665 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.029
   TIGR01187   2 LGpsGsGkttlLrllaGl 19 
                  Gp G+GkttlL +l G 
  MMETSP1061-20121228|1180_1 500 RGPNGAGKTTLLHTLRGT 517
                 59*************996 PP

  == domain 4    score: 17.5 bits;  conditional E-value: 6.8e-06
   TIGR01187  92 efakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq 161
                 + a r + qlsGG + rvala    k  ++ LlDe    LD +  + + + l +  +  G  +v++ hD+
  MMETSP1061-20121228|1180_1 585 DKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKG-SIVVISHDK 653
                 67889999*************9888888999**********9999988888888877777.455677776 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   9.8e-05    0.0054       4      80 ..      83     162 ..      80     167 .. 0.72
   2 !   21.7   0.0   4.7e-07   2.6e-05     107     217 ..     235     345 ..     226     401 .. 0.75
   3 !   23.0   0.0   1.9e-07     1e-05      18     202 ..     484     659 ..     479     680 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.8e-05
   TIGR03522   4 evsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvav..agedvlkn.slevrkniGyl 80 
                 +++d++ + g +  l ++ +++e+ +  G++G nG Gkstl+k +   l   +   av  +  dv  + ++  ++++Gyl
  MMETSP1061-20121228|1180_1  83 RLVDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGNYGAEDAVlnDYLDVDGSiTIGTKQQVGYL 162
                 567778888889999****************************9988776554433330033344332134556777777 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 4.7e-07
   TIGR03522 107 grklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkG...kivadkkle 217
                 g +++++v+ l++  G+++   +  ++ls G++ rv +ak ll +P++ +ldeP+  ld      + + +k+   + +++l th +  ++a c+++  i  G   +i  + + +
  MMETSP1061-20121228|1180_1 235 GYVQEQEVATLLKGLGFTNL-TQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYD-AGAMVLVTHDIELLNA-CEHIAEITSGgslQIYKSCTYD 345
                 56678889999998888764.56799**********************************99999999999875.5678888997755555.8888777766333344444444 PP

  == domain 3    score: 23.0 bits;  conditional E-value: 1.9e-07
   TIGR03522  18 ldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldl.yvreylef..saalyklkgrklkkrveelielvGlkaeq.hkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrv 202
                 + ++ +++++G  +   GPnGaGk+tl+  l g l+   G   v++ + lk  +  +       e +P    +  v e+ +    ++ly  +     ++ + ++   Gl+ ++  + +g+ls G + rv la   l   ++ +lde +  ld + + ++ ev+ + +  k  i+   ++   +a c++v
  MMETSP1061-20121228|1180_1 484 ISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDR-VED-SNLKLGVFTQDLAQ---ELDPKRRAVdLVTEHARSgaDGDLYVTD-----EQARTVLGGLGLRGDKaLRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIV---VISHDKAFCEQV 659
                 678999****************************99887753.333.33444444444333...3344433321377877751145677655.....88999*******987626789************************************************99997554...556667777776 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0017     0.094     290     332 ..      87     129 ..      80     186 .. 0.78
   2 !   19.3   0.0   1.3e-06   7.2e-05     421     508 ..     254     337 ..     238     354 .. 0.83
   3 !   13.5   0.1   7.6e-05    0.0042      12      49 ..     480     517 ..     475     524 .. 0.92
   4 !   16.6   0.0   8.7e-06   0.00048     423     494 ..     589     659 ..     533     679 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0017
   TIGR03269 290 isvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaG 332
                 ++v rG    + n++  v+ k  +GlvG  G Gk+tl k ++ 
  MMETSP1061-20121228|1180_1  87 VAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILN 129
                 4677777777888888888888888888888888888887654 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.3e-06
   TIGR03269 421 ldklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivk 508
                 l +  dels G + rv++a++l+ +p + +ldep+  +d  ++  +a+ +         ++v+v+hd++++ + c+ +a + +G  ++
  MMETSP1061-20121228|1180_1 254 LTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYD---AGAMVLVTHDIELL-NACEHIAEITSGGSLQ 337
                 67889***********************************99999998765433...467999*****975.5788888777775555 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 7.6e-05
   TIGR03269  12 glevlknisleleeGevlGilGksGaGksvllhllrGl 49 
                  +e + +i+l++++G  + i G  GaGk+ llh lrG+
  MMETSP1061-20121228|1180_1 480 SVELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGT 517
                 678899******************************97 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 8.7e-06
   TIGR03269 423 klpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlev 494
                 ++  +ls Ge+ rvala   +k  ++ +lde +  +d    v+  + +l    + + + v++shd  f  +v
  MMETSP1061-20121228|1180_1 589 RMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVEC-VEALSEVLSDWGDGKGSIVVISHDKAFCEQV 659
                 4556677777777777777777777777777777777444.4444445555666666677777777776655 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0031      0.17     491     527 ..      91     127 ..      86     136 .. 0.86
   2 !   26.4   0.0   7.6e-09   4.2e-07     609     704 ..     252     351 ..     241     359 .. 0.86
   3 ?    5.6   0.0     0.016      0.86     494     527 ..     481     514 ..     479     517 .. 0.88
   4 !   17.8   0.0     3e-06   0.00017     617     681 ..     593     660 ..     589     678 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0031
   TIGR00958 491 rpdkpvlkdLtftlepGevvalVGPsGsGKStvaall 527
                 r  + +l ++ + +ep +   lVG +G GKSt    +
  MMETSP1061-20121228|1180_1  91 RGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAI 127
                 66678999************************87554 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 7.6e-09
   TIGR00958 609 tevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe.sksaksrtvlliahrLstvekadkilvlkkg...svvelGthkqLmeke 704
                 t++ ++   lsgG + r+  A+ L+ kP + +LDe    LD    + l +  k+    +++l++h +++ + +++i+ ++ g   ++ +  t++q  +++
  MMETSP1061-20121228|1180_1 252 TNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANyLKTYDAGAMVLVTHDIELLNACEHIAEITSGgslQIYKSCTYDQYLQQK 351
                 788889999*************************************99995666666789*******************998766677888888855543 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.016
   TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaall 527
                 ++++ d+ ++++ G  + + GP+G GK t    l
  MMETSP1061-20121228|1180_1 481 VELISDIELNIQQGMKILIRGPNGAGKTTLLHTL 514
                 56788999********************987665 PP

  == domain 4    score: 17.8 bits;  conditional E-value: 3e-06
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe...sksaksrtvlliahrLstvekad 681
                 qlsgG k r+A+A   ++   + +LDe    LD+e+ ++l e   +    + ++++i h    +e++ 
  MMETSP1061-20121228|1180_1 593 QLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEvlsDWGDGKGSIVVISHDKAFCEQVG 660
                 9*************9999999***************99999964222334568999999999998864 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.6e-09     9e-08       3     198 ..      98     330 ..      96     352 .. 0.64
   2 !   19.0   0.0   2.8e-06   0.00016       1     192 [.     483     659 ..     483     681 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.6e-09
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldk.........eltktsGeilldgkelaal...alrgreialilqnPrsafnPlltikeqll......etlkalekls...kqakelivealea...........vgLeeaeevlkkypf........elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevav 198
                 ++++  +      +lvG+ G+Gks+  +ail+ l++         +   ++G+i++  k+       +  + ++ +++ +  sa++ + t +++l+      e+  + +      ++  e+++++l+            v+ +e++++lk   f        elsGG   Rv  a  ll++++l + DeP+  lD  ++a + ++l+     ++ +++l+thD+  +  + +   +
  MMETSP1061-20121228|1180_1  98 SNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGNygaedavlnDYLDVDGSITIGTKQQVGYlkqTAVSGSTLTVFDEAASAMTEVATARSNLRraeqgvESAATDTDSDtdsDTELERALQTLDTardryervggyVQEQEVATLLKGLGFtnltqtcdELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLK---TYDAGAMVLVTHDIELLNACEHIAEI 330
                 5677777777778999999999999999998766531111111113456778888766654443455555556667788888888888777665541111113333322222111222234445544311122222111345667788887776445544447***********************************999888776...567899********999887665555 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 2.8e-06
   TIGR02770   1 lvqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkalekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvael 192
                 l++d++l++++g  + + G  G+Gk++   ++ g+l+          ll+g  + +++l   ++++  q+  + ++P +   + ++e  ++        + e++   l   gL+ +++ l++   +lsGG   Rv +a+  l  + l + De +  lDv     + + l++  + +g +i++i+hD +   ++
  MMETSP1061-20121228|1180_1 483 LISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLP----------LLNGDRVEDSNL---KLGVFTQDLAQELDPKRRAVDLVTEHARSGADGDlYVTDEQARTVLGGLGLR-GDKALRMV-GQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKG-SIVVISHDKAFCEQV 659
                 6889999999999999999999999999999999999..........788988888765...6888999999999999999999999999888777677777888999999**9.77888876.59*********************************988877777877776665.799*****7766554 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.3e-05    0.0018     480     525 ..      82     127 ..      62     135 .. 0.89
   2 !   22.5   0.0   1.1e-07     6e-06     607     687 ..     252     333 ..     237     358 .. 0.83
   3 !   11.8   0.0   0.00019     0.011     493     535 ..     482     524 ..     478     544 .. 0.84
   4 ?    5.8   0.0     0.013       0.7     615     670 ..     593     651 ..     585     655 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.3e-05
   TIGR03796 480 lrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklv 525
                 lr v  + s+  + l+++++ +++p ++  lvG+ G+Gkst+ k +
  MMETSP1061-20121228|1180_1  82 LRLVDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAI 127
                 56666777888899***************************98865 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.1e-07
   TIGR03796 607 aelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgc.tciivaHRLstiRdcdeiivlerG 687
                 ++l++    lsGG + R+  A+ L ++Ps+ +lDE    LD ++   + + l+     ++++v+H +  +  c++i  +  G
  MMETSP1061-20121228|1180_1 252 TNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAgAMVLVTHDIELLNACEHIAEITSG 333
                 68999999*********************************************876527899************99877777 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 0.00019
   TIGR03796 493 pliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGe 535
                  li+d++l++++G+++ + G+ G+Gk t+ + + G     +G+
  MMETSP1061-20121228|1180_1 482 ELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGD 524
                 69**************************999888877766665 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.013
   TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRg...ctciivaH 670
                  lsGG++ R+ +A    k   + +lDE+   LD e  +a+ e l   g    ++++++H
  MMETSP1061-20121228|1180_1 593 QLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGdgkGSIVVISH 651
                 59***********76555556779***********999998888766522235666666 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.038       2.1       4      41 ..      92     130 ..      90     147 .. 0.81
   2 ?   -1.4   0.0       3.8   2.1e+02     130     162 ..     151     184 ..     139     193 .. 0.78
   3 !   27.6   0.0   5.9e-09   3.3e-07     112     211 ..     244     338 ..     233     402 .. 0.84
   4 !   18.5   0.0   3.4e-06   0.00019       9     190 ..     484     653 ..     476     673 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.038
   TIGR01186   4 GlklgvndvdleieeGeiiviiGlsGsGkstlvr.llnr 41 
                 G++  + ++d  +e      ++G  G+Gkstl++ +ln 
  MMETSP1061-20121228|1180_1  92 GGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKaILND 130
                 555667788888888888999***********9934565 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 3.8
   TIGR01186 130 lsGGmqqrvGlaralaaeP.dlllmdeafsaldP 162
                 ++ G +q+vG ++  a+    l + dea sa+  
  MMETSP1061-20121228|1180_1 151 ITIGTKQQVGYLKQTAVSGsTLTVFDEAASAMTE 184
                 556999****999998875157789****99865 PP

  == domain 3    score: 27.6 bits;  conditional E-value: 5.9e-09
   TIGR01186 112 ealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqv 211
                  +lk +++ + + +  delsGG q rv  a+ l  +P l l+de+   ld   r  l + l+  ++    ++v++thd+ e l  ++ i+ + +G  +q+
  MMETSP1061-20121228|1180_1 244 TLLKGLGFTNLT-QTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA---GAMVLVTHDI-ELLNACEHIAEITSGGSLQI 338
                 567777777765.568*****************************************998877665...579******9.67888888888888877666 PP

  == domain 4    score: 18.5 bits;  conditional E-value: 3.4e-06
   TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGki.lidGediaeisdaelrevrrkkiamviqkia..lfPhmtild.nislglellkideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdl 190
                 + d++l+i++G  i i G+ G+Gk+tl++ l        G + l++G+ +   +d +l      k+++  q++a  l P +   d  ++++   ++ d     e+a+ +l  ++l  + + r   +lsGG + rv la       +l l+de    ld    + l + l +  +    +iv i+hd 
  MMETSP1061-20121228|1180_1 484 ISDIELNIQQGMKILIRGPNGAGKTTLLHTLR-------GTLpLLNGDRV---EDSNL------KLGVFTQDLAqeLDPKRRAVDlVTEHARSGADGDLYVTDEQARTVLGGLGLrGDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGK-GSIVVISHDK 653
                 6899**********************999884.......44327888876...45667......889889988755778865544167788888888888999************77788899**************97666666899***********99999999999988765.58999***95 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00044     0.024      20     115 ..      96     190 ..      85     204 .. 0.78
   2 !   23.9   0.0   7.3e-08     4e-06     118     218 ..     239     334 ..     231     354 .. 0.86
   3 ?    5.0   0.0     0.041       2.3      17      50 ..     480     513 ..     475     558 .. 0.84
   4 !   13.5   0.0    0.0001    0.0056     128     219 ..     580     673 ..     568     681 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00044
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircv.n.llekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpke 115
                  l n++  v     +g++ga g gkstl++ + n l +  ++ av+ d  d+   + +  + +++q+g + q     s+ tvf++ a  +   +t++ 
  MMETSP1061-20121228|1180_1  96 LLSNIDWRVEPKSKWGLVGANGCGKSTLLKAIlNdLGNYGAEDAVLNDYLDV---DGSITIGTKQQVGYLKQTAVSGSTLTVFDEAASAMTEVATARS 190
                 578899999888899**************98645155667888888776664...5667778889999999999999999999988877665555555 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 7.3e-08
   TIGR02314 118 krkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkge 218
                 ++ v+ ll  +g+++  ++   +lsgg + rv+ a+ l s+p + l de +  ld ++   + + lk  +     +++l+th+++++   c+++a i++g 
  MMETSP1061-20121228|1180_1 239 EQEVATLLKGLGFTNLTQT-CDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAG---AMVLVTHDIELLN-ACEHIAEITSGG 334
                 5778889999999988776.579*********************************9999999999988754...6789******986.699999776653 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.041
   TIGR02314  17 kikaldnvslfvpkgqifgvigasgagkstlirc 50 
                  ++ + +++l + +g  + + g  gagk+tl+  
  MMETSP1061-20121228|1180_1 480 SVELISDIELNIQQGMKILIRGPNGAGKTTLLHT 513
                 677899*************************875 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 0.0001
   TIGR02314 128 vgl.sdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkri..cdevavidkgel 219
                 +gl +dk      +lsgg+k rva+a        + l de +  ld    +++ e+l +     g +i++i+h+     ++   + +++ d+g l
  MMETSP1061-20121228|1180_1 580 LGLrGDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKG-SIVVISHDKAFCEQVgfTHVLTITDEGTL 673
                 44435777778899************865566678899*********************987766.78899999777766522355556666655 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     8e-05    0.0044       4      52 ..      81     129 ..      78     174 .. 0.87
   2 ?   -2.6   0.0         8   4.5e+02     249     282 ..     161     194 ..     155     202 .. 0.82
   3 !   23.1   0.0   1.3e-07     7e-06     133     205 ..     258     327 ..     227     340 .. 0.77
   4 ?    6.2   0.0     0.017      0.97      19      54 ..     483     518 ..     476     533 .. 0.85
   5 !    9.8   0.0    0.0014     0.077     128     176 ..     586     634 ..     574     665 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8e-05
   TIGR01288   4 aidlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlg 52 
                 a+ lv+v+ s g++ ++ ++ + +     +gl+g ng+gkst+ + +l 
  MMETSP1061-20121228|1180_1  81 ALRLVDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILN 129
                 7899***************************************999986 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 8
   TIGR01288 249 yarrvevsgetlfcyasdpeqvrvqlrgrtdlrl 282
                 y ++  vsg tl ++ ++   ++    +r++lr 
  MMETSP1061-20121228|1180_1 161 YLKQTAVSGSTLTVFDEAASAMTEVATARSNLRR 194
                 6678889999999999999999888889999886 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 1.3e-07
   TIGR01288 133 vadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrl 205
                   +lsgg + r+++a+ l+  p l +ldep+  ld  ar  + + l++  a g  ++l th +e  +  c+ +
  MMETSP1061-20121228|1180_1 258 CDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA-GA-MVLVTHDIELLN-ACEHI 327
                 568*******************************************99866.54.455566655433.45555 PP

  == domain 4    score: 6.2 bits;  conditional E-value: 0.017
   TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlgli 54 
                 ++ d+ + i +g  + + gpngagk+t+   + g  
  MMETSP1061-20121228|1180_1 483 LISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTL 518
                 578999999******************988887765 PP

  == domain 5    score: 9.8 bits;  conditional E-value: 0.0014
   TIGR01288 128 kadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwe 176
                 ka   v +lsgg k r++la+  ++  +l +lde +  ld  +   + e
  MMETSP1061-20121228|1180_1 586 KALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSE 634
                 677789*******************************999877665555 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     2e-05    0.0011     457     500 ..      85     128 ..      75     188 .. 0.90
   2 !   22.3   0.0   1.5e-07   8.5e-06     577     673 ..     248     349 ..     217     354 .. 0.82
   3 !    8.5   0.0    0.0024      0.13     465     500 ..     480     515 ..     476     518 .. 0.89
   4 ?    4.9   0.0     0.028       1.6     587     634 ..     592     639 ..     589     661 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2e-05
   TIGR03797 457 vtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLL 500
                 v  + ++ g++ L+++  ++ep    ++vGa G+GKStll+ +L
  MMETSP1061-20121228|1180_1  85 VDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAIL 128
                 55566788999*****************************9877 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 1.5e-07
   TIGR03797 577 gl.hTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiv.iAHRLSTirnadrilvleeG...rvveqGsyeeLla 673
                 gl +T +++  + lSGG + R+  A+ l +kP + l+DE    LD  + a   + l++  +  +v + H +  ++ +++i  +  G   ++ ++ +y++ l+
  MMETSP1061-20121228|1180_1 248 GLgFTNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDAGAMVlVTHDIELLNACEHIAEITSGgslQIYKSCTYDQYLQ 349
                 55479999***************************************************997655389**********999888885555677777777665 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0024
   TIGR03797 465 gplvLddvslkiepGefvaivGaSGsGKStllrlLL 500
                 +   ++d+ l+i++G  + i G+ G+GK tll  L 
  MMETSP1061-20121228|1180_1 480 SVELISDIELNIQQGMKILIRGPNGAGKTTLLHTLR 515
                 556789**************************9875 PP

  == domain 4    score: 4.9 bits;  conditional E-value: 0.028
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl 634
                 g+lSGG + R+ +A    +  ++ l+DE    LD +  ++ se l+  
  MMETSP1061-20121228|1180_1 592 GQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDW 639
                 68***********986555556789**********9999999988754 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   5.1e-05    0.0028      11      47 ..      91     127 ..      82     149 .. 0.82
   2 !   14.3   0.0   4.2e-05    0.0023     402     448 ..     259     305 ..     236     343 .. 0.62
   3 !   10.6   0.0   0.00053     0.029      12      52 ..     479     519 ..     476     529 .. 0.91
   4 !   11.0   0.0   0.00041     0.023     128     470 ..     580     662 ..     553     679 .. 0.56

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 5.1e-05
   TIGR02633  11 fggvkaldnidlklraGeivslcGenGaGkstlmkvl 47 
                  gg + l nid ++++    +l G nG+Gkstl+k +
  MMETSP1061-20121228|1180_1  91 RGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAI 127
                 5777889***************************954 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 4.2e-05
   TIGR02633 402 arlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinq 448
                  +lsGG q +  +aklll +p + +ldep+  +d  a++ + + +++
  MMETSP1061-20121228|1180_1 259 DELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKT 305
                 35666666666667776667766667776666666666554444433 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00053
   TIGR02633  12 ggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyp 52 
                 ++v+ + +i+l+++ G  + + G nGaGk+tl+  l g  p
  MMETSP1061-20121228|1180_1 479 ESVELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLP 519
                 578999*****************************999887 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 0.00041
   TIGR02633 128 lkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhvatkdaealseddiitmmvGreltslypkepheigdvilevenltaydvvnrkikrvddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavlkkfakksrideaaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGls 470
                 l l  ++  r v++l +G++  v +a    k  +l +lde s  l  + +e l +++ d      + v ish                                                                                                                                                                                                                                                                       + e +G +
  MMETSP1061-20121228|1180_1 580 LGLRGDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FCEQVGFT 662
                 444445555555555555555555555555555555555555555555555555555555555555555555432....................................................................................................................................................................................................................................................................23444444 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.4e-06   0.00052    1226    1269 ..      88     131 ..      75     155 .. 0.88
   2 !   16.6   0.0     4e-06   0.00022    1354    1434 ..     261     341 ..     245     388 .. 0.85
   3 ?    3.2   0.0     0.044       2.5     442     476 ..     484     518 ..     467     530 .. 0.67
   4 !   13.9   0.0   2.6e-05    0.0014     548     585 ..     593     630 ..     565     654 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 9.4e-06
   TIGR01271 1226 kyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrll 1269
                    + +g+++l ++ + ve+  + gl+g  g+gkstll a+l  l
  MMETSP1061-20121228|1180_1   88 AVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDL 131 
                  55789***********************************9765 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 4e-06
   TIGR01271 1354 lsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflvi.egssvkqyds 1434
                  ls g +  + +a+ +lsk  + lldeps +ld  +   + + lk ++   +++l  h +e l  c+++  i  g s++ y s
  MMETSP1061-20121228|1180_1  261 LSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLK-TYDAGAMVLVTHDIELLNACEHIAEItSGGSLQIYKS 341 
                  8889999999*****************************99998.6788889999**********99876624667776665 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.044
   TIGR01271 442 lknislklekgqllavagstgsgkssllmmilgel 476
                 + +i+l++++g  + + g  g+gk++ll  + g l
  MMETSP1061-20121228|1180_1 484 ISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTL 518
                 45566666666666666666666666665555554 PP

  == domain 4    score: 13.9 bits;  conditional E-value: 2.6e-05
   TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvtek 585
                  lsgg++ar++la    k ++lylld   ++ldv    
  MMETSP1061-20121228|1180_1 593 QLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVE 630
                 59*******************************97654 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.1   0.00038     0.021     334     379 ..      82     127 ..      61     195 .. 0.89
   2 !    9.2   0.0    0.0014      0.08     455     530 ..     244     319 ..     221     361 .. 0.72
   3 !   11.8   0.0   0.00024     0.013     343     379 ..     478     514 ..     475     554 .. 0.90
   4 !   17.2   0.0   5.4e-06    0.0003     469     525 ..     592     648 ..     584     666 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00038
   TIGR02203 334 frnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnll 379
                 +r v++     +   l++i+ +ve+     lvG  G Gkstl++ +
  MMETSP1061-20121228|1180_1  82 LRLVDVAVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAI 127
                 677888888889999***************************9865 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0014
   TIGR02203 455 klpeGld.tevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLs 530
                 +l +Gl  t++ +   +LsGG   R++ a+ ll    + +LDe    LD  +   + + L+        +++ h + 
  MMETSP1061-20121228|1180_1 244 TLLKGLGfTNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA-GAMVLVTHDIE 319
                 5566665367889999*********************************8554444444444333.34444555555 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 0.00024
   TIGR02203 343 gddrealdsislkveaGevvalvGrsGsGkstlvnll 379
                 g+++e +++i+l++++G  + + G+ G+Gk+tl++ l
  MMETSP1061-20121228|1180_1 478 GESVELISDIELNIQQGMKILIRGPNGAGKTTLLHTL 514
                 578899***************************8765 PP

  == domain 4    score: 17.2 bits;  conditional E-value: 5.4e-06
   TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlvi 525
                 ++LsGG + R+a+a   lk + + +LDe    LD e   ++ + L    +g+ ++v+
  MMETSP1061-20121228|1180_1 592 GQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVV 648
                 68************************************9999999999999999865 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0032      0.18      36     118 ..      92     176 ..      60     197 .. 0.72
   2 !   19.4   0.0   1.2e-06   6.8e-05     138     201 ..     239     295 ..     226     316 .. 0.80
   3 !    8.3   0.1    0.0029      0.16      40      72 ..     483     515 ..     475     535 .. 0.85
   4 !   12.1   0.0    0.0002     0.011     159     223 ..     591     650 ..     565     668 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0032
   TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalaf....rsekglkvsgdvllnGekveakemraisayvqqddlfiptltvre 118
                 +  +ll n+   +++     ++G+ G GK+TLl+a+ +    + +++   +    ++G        ++  +y++q  +   tltv +
  MMETSP1061-20121228|1180_1  92 GGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNdlgnYGAEDAVLNDYLDVDGSITI--GTKQQVGYLKQTAVSGSTLTVFD 176
                 5566777777777777777899**********988654111155555555555667776544..46677889999999888888865 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1.2e-06
   TIGR00955 138 rerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfs 201
                 ++ v  +l+ lg ++  +t          lSgG + R+++a+ ll++P+l ++DEP   LD   
  MMETSP1061-20121228|1180_1 239 EQEVATLLKGLGFTNLTQTCDE-------LSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSA 295
                 5667777777777776666544.......*******************************9654 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0029
   TIGR00955  40 llknvsGvaksGellAvlGsSGaGKtTLlnala 72 
                 l+ ++   +++G  + + G+ GaGKtTLl +l 
  MMETSP1061-20121228|1180_1 483 LISDIELNIQQGMKILIRGPNGAGKTTLLHTLR 515
                 66677778899999999************9986 PP

  == domain 4    score: 12.1 bits;  conditional E-value: 0.0002
   TIGR00955 159 gvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktvilti 223
                    g+   lSgGe+ R+ala  +l+   l ++DE    LD      + +vL +  +   ++++  
  MMETSP1061-20121228|1180_1 591 V--GQ---LSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVIS 650
                 3..44...********************************9999999999999987555454444 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.078       4.3      53      72 ..     110     130 ..      74     182 .. 0.85
   2 !   23.5   0.0   9.4e-08   5.2e-06     159     246 ..     255     338 ..     234     356 .. 0.84
   3 !    8.5   0.0    0.0033      0.18      40      99 ..     484     542 ..     469     557 .. 0.82
   4 !    8.7   0.0    0.0029      0.16     159     228 ..     588     656 ..     570     679 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.078
   TIGR03415  53 lvlmGlsGsGkssllrav.ng 72 
                   l+G  G Gks+ll+a+ n 
  MMETSP1061-20121228|1180_1 110 WGLVGANGCGKSTLLKAIlND 130
                 5689************98455 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 9.4e-08
   TIGR03415 159 dkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivql 246
                 ++  +elsGG q rv +a+ +  +  + l+deP   ld   ra l + l ++ +    ++v+v+hd+ e l   ++ia + +G  +q+
  MMETSP1061-20121228|1180_1 255 TQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTYDA---GAMVLVTHDI-ELLNACEHIAEITSGGSLQI 338
                 45689*****************************************99877776...589******9.68999999998887766665 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0033
   TIGR03415  40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeat 99 
                 ++d+ l++++G  +++ G  G+Gk++ll ++ g  p+  G+ +v+d + ++ v++ d a+
  MMETSP1061-20121228|1180_1 484 ISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGD-RVEDSNLKLGVFTQDLAQ 542
                 6899*****************************99999997.688888888877777655 PP

  == domain 4    score: 8.7 bits;  conditional E-value: 0.0029
   TIGR03415 159 dkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldea 228
                  + vg+lsGG + rv la      +++ l+de    ld    + l +  l+     k  iv +shd    
  MMETSP1061-20121228|1180_1 588 LRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEV-LSDWGDGKGSIVVISHDKAFC 656
                 57899*************876678999***********9999998755.555566789999999996544 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.62        34     623     656 ..      97     130 ..      69     152 .. 0.78
   2 !   17.7   0.0   3.1e-06   0.00017     475     563 ..     248     332 ..     221     354 .. 0.74
   3 ?    1.9   0.0      0.19        10     623     652 ..     484     513 ..     478     530 .. 0.86
   4 !   19.9   0.0   6.8e-07   3.8e-05     824     890 ..     589     652 ..     571     672 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.62
   TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLindiLvk 656
                 l +id ++  +    + G  g GkstL++ iL  
  MMETSP1061-20121228|1180_1  97 LSNIDWRVEPKSKWGLVGANGCGKSTLLKAILND 130
                 677777777777777889***********99975 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 3.1e-06
   TIGR00630 475 GLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetireaDyvvdiGP 563
                 GL + +l ++ + lsGG + r+ +a+ + s+    l +lDePs  L +     L + lk+  d G  +++v hD e +++ +++ +i  
  MMETSP1061-20121228|1180_1 248 GLGFTNLTQTCDELSGGWQMRVSFAKLLLSKP--SLALLDEPSNHLDRSARAWLANYLKT-YDAGA-MVLVTHDIELLNACEHIAEITS 332
                 77777788888888888888888888887764..46778888887776666666666655.46664.4556788888888888877754 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.19
   TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLind 652
                 + di+++i  g+ ++i G+ g+Gk tL++ 
  MMETSP1061-20121228|1180_1 484 ISDIELNIQQGMKILIRGPNGAGKTTLLHT 513
                 678999999999999999999999999874 PP

  == domain 4    score: 19.9 bits;  conditional E-value: 6.8e-07
   TIGR00630 824 qpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehn 890
                 + +  LsGGe  rv La+   k s    ly+lDe +  L ++ ++ L evl    d   ++vvi h+
  MMETSP1061-20121228|1180_1 589 RMVGQLSGGEKARVALAMFALKPS---NLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHD 652
                 55678*************999987...59***************************999******97 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     4e-08   2.2e-06      75     255 ..      95     306 ..      80     330 .. 0.83
   2 ?    4.8   0.0     0.016       0.9      72     110 ..     479     517 ..     473     535 .. 0.77
   3 !    7.0   0.0    0.0036       0.2     206     242 ..     590     626 ..     582     638 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 4e-08
   TIGR00956  75 dilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeikkhyrgdvvYsaetdvHlpsltvketLdfaarlktpqnRvkgvsreeyakk......................................ladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalkts 255
                 ++l+++d  ++p     ++G  g G+stlLk+i  ++ ++  ++     Y  ++   i+   + +v Y  +t v   +ltv +  + a ++  +++  +++ r e   +                                       ++v+    GL  t+ t+  ++l    sGG + Rvs a  l++k++++++D+ +  LD +    +++ lkt 
  MMETSP1061-20121228|1180_1  95 TLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGNYGAEDAVLNDYLDVD-GSITIGTKQQVGYLKQTAVSGSTLTVFD--EAASAMTEVATARSNLRRAEQGVEsaatdtdsdtdsdteleralqtldtardryervggyvqEQEVATLLKGLGFTNLTQTCDEL----SGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKTY 306
                 6778888888888888899*********************98444444454443.3577777889****************99..5566666777767777776654445888999*****************************98888888889************96....*******************************99888888888875 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.016
   TIGR00956  72 kkfdilkdvdglikpgelvvvLGrPgsGcstlLksiask 110
                 +++++++d++  i+ g  +++ G+ g+G++tlL+++ ++
  MMETSP1061-20121228|1180_1 479 ESVELISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGT 517
                 566777777777888888888888888888888877665 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0036
   TIGR00956 206 lvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDs 242
                 +v  +sGGe+ Rv++a   + +++++++D+++  LD 
  MMETSP1061-20121228|1180_1 590 MVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDV 626
                 56678*****************************995 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.3     0.086       4.8      29      49 ..     113     133 ..     111     138 .. 0.88
   2 ?    3.4   0.2     0.045       2.5     650     735 ..     145     229 ..     142     243 .. 0.86
   3 ?    2.7   0.2     0.072         4     885     958 ..     345     417 ..     313     426 .. 0.74
   4 ?   -0.7   0.0      0.81        45      27      40 ..     498     511 ..     487     522 .. 0.76
   5 !   32.2   0.0   9.5e-11   5.2e-09    1067    1142 ..     585     657 ..     577     665 .. 0.87
   6 ?    2.1   0.9      0.11       6.2     321     382 ..     729     789 ..     698     798 .] 0.39

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.086
   TIGR02169  29 sGpNGSGKSNiiDallFaLGl 49 
                 +G+NG GKS ++ a+l  LG 
  MMETSP1061-20121228|1180_1 113 VGANGCGKSTLLKAILNDLGN 133
                 8***************99996 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.045
   TIGR02169 650 lekSGaitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeek 735
                 l+  G+it G + ++ g+l++++ + +   + ++  +   e ++++s+lrr+e+ ++++    +  + +  e+e+ l++l+  +++
  MMETSP1061-20121228|1180_1 145 LDVDGSITIGTK-QQVGYLKQTAVSGSTLTVFDEAASAMTEVATARSNLRRAEQGVESAATDTDSDTDSDTELERALQTLDTARDR 229
                 677899999996.6788999999999999999999999999999999999999999999999999999999999999999877665 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.072
   TIGR02169 885 lkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvk 958
                  + L+++r+++ a   e ek+ e++ a+++   ++    ++k++a++++++++e+ ++++  +p+++  + +++
  MMETSP1061-20121228|1180_1 345 DQYLQQKRDRAYAAAAEYEKNLEKA-AKLQAFVDKYGASATKASAAQSRVKQIEKMKAQGLLDPPTDNAVSEIE 417
                 5668999999999999988888765.566777788899999999999999999998888888877776666665 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.81
   TIGR02169  27 visGpNGSGKSNii 40 
                  i GpNG+GK  ++
  MMETSP1061-20121228|1180_1 498 LIRGPNGAGKTTLL 511
                 599*******8776 PP

  == domain 5    score: 32.2 bits;  conditional E-value: 9.5e-11
   TIGR02169 1067 dKavqrleamSGGEKsltALsfifAiQrykPspfYafDEvDmfLDgvNvervaklikeka.keaQfivvslrkpmle 1142
                  dKa++ +  +SGGEK+ +AL++ fA   +kPs +Y++DEv  +LD   ve ++++ ++ + ++   +v+s+ k+  e
  MMETSP1061-20121228|1180_1  585 DKALRMVGQLSGGEKARVALAM-FA---LKPSNLYLLDEVSNHLDVECVEALSEVLSDWGdGKGSIVVISHDKAFCE 657 
                  899*****************96.77...59**************************998724667778888777665 PP

  == domain 6    score: 2.1 bits;  conditional E-value: 0.11
   TIGR02169 321 aeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaa 382
                 a +r+ak+e+ +++++e++++l++e+ ++  +  kl + l +++++lee + el e+ +e +
  MMETSP1061-20121228|1180_1 729 APKRIAKIESLVEQKEEKMAALDEEMMANGSDVGKLVD-LTNARNVLEEEVLELMEEWEELE 789
                 22333333333333333333333333333333333322.12222222222222222222222 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       6.1   3.4e+02     365     380 ..     111     126 ..      96     226 .. 0.66
   2 ?    3.9   0.0     0.064       3.6     465     508 ..     254     297 ..     241     320 .. 0.86
   3 !   10.1   0.0   0.00085     0.047     350     381 ..     483     514 ..     477     525 .. 0.89
   4 !   17.2   0.0   5.9e-06   0.00033     470     507 ..     592     629 ..     547     653 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 6.1
   TIGR01192 365 aivgptgagkttlinl 380
                  +vg  g gk+tl+  
  MMETSP1061-20121228|1180_1 111 GLVGANGCGKSTLLKA 126
                 5677777777776542 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.064
   TIGR01192 465 vgergnrlsggerqrlaiarailknapilvldeatsaldvetea 508
                 + +  ++lsgg + r++ a+ +l    + +lde +  ld  + a
  MMETSP1061-20121228|1180_1 254 LTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARA 297
                 5567789****************************999977665 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00085
   TIGR01192 350 gvrdvsfeakagqtvaivgptgagkttlinll 381
                  + d+ ++++ g  + i gp gagkttl+  l
  MMETSP1061-20121228|1180_1 483 LISDIELNIQQGMKILIRGPNGAGKTTLLHTL 514
                 578999**********************9877 PP

  == domain 4    score: 17.2 bits;  conditional E-value: 5.9e-06
   TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvete 507
                  +lsgge+ r+a+a   lk + + +lde +  ldve  
  MMETSP1061-20121228|1180_1 592 GQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECV 629
                 48*********************************974 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0012     0.065     357     388 ..      97     128 ..      67     143 .. 0.82
   2 ?   -2.2   0.0       4.4   2.4e+02     466     540 ..     257     328 ..     221     336 .. 0.61
   3 !   19.4   0.0   1.2e-06   6.7e-05     357     533 ..     484     656 ..     471     660 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0012
   TIGR01194 357 lGpidlriasGelvyivGenGcGkstliklll 388
                 l  id r++      +vG nGcGkstl+k +l
  MMETSP1061-20121228|1180_1  97 LSNIDWRVEPKSKWGLVGANGCGKSTLLKAIL 128
                 5667777777777779************9875 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 4.4
   TIGR01194 466 tttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrli 540
                 t  +ls G + r+++    l +  + llde +   d + +  + +  l        ++++++hd + ++  +++ 
  MMETSP1061-20121228|1180_1 257 TCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLAN-YLKTY--DAGAMVLVTHDIELLNACEHIA 328
                 334688888999888888888888888888888777765544333.33222..2334555666666666555555 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 1.2e-06
   TIGR01194 357 lGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfa..dyylfddlvqpdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryf 533
                 +  i+l+i++G  + i G nG Gk+tl+  l G     +G+ + d +       +d  + +       d    +   + d +   + +qa+t l  l+l         +     +ls G++ r+al    l+   ++llde +   d      +  e+l d      +i+vishd  + 
  MMETSP1061-20121228|1180_1 484 ISDIELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDRVEDSNLKLGVFTQDLAQELDPKRRavDLVTEHARSGADGDLYVTDEQARTVLGGLGLRGDK-----ALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEAL-SEVLSDWGDGKGSIVVISHDKAFC 656
                 5689***************************998755555544444433322333333333322220133333334455666667778999999999998643.....444557899******************************9887765.79999998776789******8775 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0071       0.4     645     689 ..      88     132 ..      63     163 .. 0.82
   2 !   14.0   0.0   2.4e-05    0.0013     752     874 ..     252     378 ..     239     415 .. 0.70
   3 !    8.9   0.1    0.0008     0.044     657     835 ..     487     666 ..     479     717 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0071
   TIGR00957 645 twardepptlngltlsipegalvavvgqvgcgkssllsallaemd 689
                 + +r+    l +++ ++   +   +vg  gcgks+ll a+l ++ 
  MMETSP1061-20121228|1180_1  88 AVSRGGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLG 132
                 5566677778899999988889999***************99875 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 2.4e-05
   TIGR00957 752 teigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivl.sdg..kisemgsyqelld..rdgafa...eflrtyasaedeldaedd 874
                 t++ +   +lsgg + rvs+a+ + s+  + lld+p   +d      + +  +       + + +lvth i  l   + i  + s+g  +i +  +y++ l+  rd a+a   e+ ++  +a + ++  d+
  MMETSP1061-20121228|1180_1 252 TNLTQTCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLAN-YL---KTYDAGAMVLVTHDIELLNACEHIAEItSGGslQIYKSCTYDQYLQqkRDRAYAaaaEYEKNLEKAAKLQAFVDK 378
                 556666678***************************99999776555544.44...34567789*************9998661555667889999*9999744677776111333333333333333333 PP

  == domain 3    score: 8.9 bits;  conditional E-value: 0.0008
   TIGR00957 657 ltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsv.ayvpqqawiqn.dslreni.lf.gka...leekyykavleacalladleilpsgdrt..eigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivls 835
                 ++l+i +g  + + g+ g gk++ll +l + +  ++g       +   v  q   q+ d  r  + l   +a    + + y +  +a ++l  l +   gd++   +g    +lsgg+k rv+la      +++ylld+    +d       + +v+   g  k+   ++++h  ++  qv +  vl+
  MMETSP1061-20121228|1180_1 487 IELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDRVEDSNLkLGVFTQDLAQElDPKRRAVdLVtEHArsgADGDLYVTDEQARTVLGGLGLR--GDKAlrMVG----QLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEA-LSEVLSDWGDGKGS-IVVISHDKAFCEQVGFTHVLT 666
                 6666666666666666666666666666666666666433222220224444444431233333311101211112334555555666666665553..333300222....69*************************999999987765.56789998866654.466789999999999988875 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0035      0.19      19      51 ..      98     131 ..      80     142 .. 0.76
   2 !   12.4   0.0   0.00032     0.018     138     198 ..     257     318 ..     227     331 .. 0.78
   3 ?    6.4   0.0     0.021       1.2      24      58 ..     491     525 ..     479     561 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0035
   TIGR02323  19 crvsf.lypGevlgivGesGsGkstllkalaarl 51 
                  ++++ + p    g+vG  G Gkstllka+ + l
  MMETSP1061-20121228|1180_1  98 SNIDWrVEPKSKWGLVGANGCGKSTLLKAILNDL 131
                 3488878899999****************97765 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00032
   TIGR02323 138 kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth.l 198
                 +  ++sGG q r+  a+ l+++p l ++ ep+  l    ar  l   l +    a+++vth +
  MMETSP1061-20121228|1180_1 257 TCDELSGGWQMRVSFAKLLLSKPSLALLdEPSNHL-DRSARAWLANYLKTYDAGAMVLVTHdI 318
                 56789***********************8998887.445777777777776677889999955 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.021
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarlladaGev 58 
                 +  G  + i G  G+Gk+tll++l + l   +G+ 
  MMETSP1061-20121228|1180_1 491 IQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDR 525
                 5667778899***************9998877764 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.2     0.048       2.7    1918    1999 ..      65     141 ..      53     177 .. 0.63
   2 !   14.4   0.0   1.1e-05   0.00063    2056    2150 ..     247     338 ..     223     364 .. 0.74
   3 !    8.2   0.0   0.00089      0.05    1964    2137 ..     493     660 ..     477     676 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.048
   TIGR01257 1918 dddvaeerqriisggnktdilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgdatva 1999
                  d dv  e +r   g  k   lrl +++    g+    +  +   v p   +gl+g ng+gk+t +k +  d      + +v 
  MMETSP1061-20121228|1180_1   65 DVDVVGEGRR---GDSKGAALRLVDVAVSRGGN--TLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGNYGAEDAVL 141 
                  5555555554...55666667776665443333..34556667899********************9999876554443343 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 1.1e-05
   TIGR01257 2056 kslglslyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrla.imvkgafqc 2150
                  k lg++  ++  +   sgg + ++s a  l+  p l lldep+  +d  ar  l n + +   +  a+vl +h +e  +a c ++a i   g++q 
  MMETSP1061-20121228|1180_1  247 KGLGFTNLTQ-TCDELSGGWQMRVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYLKT--YDAGAMVLVTHDIELLNA-CEHIAeITSGGSLQI 338 
                  5555554443.3456799999999999999999999999999999999999999998875..578899999999998776.555551444445444 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00089
   TIGR01257 1964 pgecfgllgvngagktttfkmltgdttvtsgdatvagksiltni.sdvhqnmgycpqfdaiddlltgrehlylyarlrgvpaeeiekvanwsikslgls.lyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealc 2137
                   g  + + g ngagktt ++ l g   +  gd     +  l     d+ q++   p+  a+d l+t  eh    a      ++e    a   +  lgl    a r+ g  sgg+k +++ a+  +    l llde +  +d ++   l +++      + ++v+ sh    ce + 
  MMETSP1061-20121228|1180_1  493 QGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDRVEDSNLKLGVFtQDLAQEL--DPKRRAVD-LVT--EHARSGADGDLYVTDEQ---ARTVLGGLGLRgDKALRMVGQLSGGEKARVALAMFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDGKGSIVVISHDKAFCEQVG 660 
                  5555566788888888888888888888888876555544433314555554..47777775.554..45444444333333333...333455677652467899************99999999999*******************999998888888999*****99999864 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.1      0.01      0.58      27      48 ..     111     132 ..     105     138 .. 0.83
   2 ?    1.7   0.2      0.15       8.6     726     770 ..     181     225 ..     144     247 .. 0.43
   3 ?   -0.6   0.3      0.76        42     338     390 ..     358     395 ..     319     408 .. 0.45
   4 ?   -1.9   0.0       1.9   1.1e+02      18      37 ..     488     508 ..     486     515 .. 0.72
   5 !   25.0   0.0   1.5e-08   8.1e-07    1086    1155 ..     588     654 ..     584     670 .. 0.87
   6 ?    1.6   1.2      0.17       9.1     243     294 ..     735     789 ..     707     798 .] 0.26

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.01
   TIGR02168  27 giVGPNGcGKSNivDAirWVLG 48 
                 g VG NGcGKS  + Ai   LG
  MMETSP1061-20121228|1180_1 111 GLVGANGCGKSTLLKAILNDLG 132
                 89**********9999976555 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.15
   TIGR02168 726 lerklselkkelerlekeveqleerlaqlekeleeleeereelee 770
                 + ++++ ++++l+r+e+ ve+++ + ++  +  +ele   ++l++
  MMETSP1061-20121228|1180_1 181 AMTEVATARSNLRRAEQGVESAATDTDSDTDSDTELERALQTLDT 225
                 112222222222222222222222222222222222222221111 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.76
   TIGR02168 338 elaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevae 390
                 +               ++ e++le+ +a+l+++ +++ +  +++ +++s+v++
  MMETSP1061-20121228|1180_1 358 A--------------AAEYEKNLEK-AAKLQAFVDKYGASATKASAAQSRVKQ 395
                 1..............1111111111.122222222222222222222222222 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 1.9
   TIGR02168  18 tinfekgitgiV.GPNGcGKS 37 
                 ++n+++g+   + GPNG GK+
  MMETSP1061-20121228|1180_1 488 ELNIQQGMKILIrGPNGAGKT 508
                 6677777754444*******7 PP

  == domain 5    score: 25.0 bits;  conditional E-value: 1.5e-08
   TIGR02168 1086 lqnlslLSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakllkefsk.ktQFIviTHnkg 1155
                  l+ + +LSGGEKA +Ala    +f +kP+ +++LDEV   LD   ve + ++l +  + k  ++vi+H k+
  MMETSP1061-20121228|1180_1  588 LRMVGQLSGGEKARVALA----MFALKPSNLYLLDEVSNHLDVECVEALSEVLSDWGDgKGSIVVISHDKA 654 
                  566789**********85....799***************************9998552677999999886 PP

  == domain 6    score: 1.6 bits;  conditional E-value: 0.17
   TIGR02168 243 eleeelkeaeeeleeleaelkelee...eleelrlekseleeeleelqkelqelk 294
                 ++e+ ++++ee++++l++e+ +  +   +l +l ++++ leee+ el +e++el+
  MMETSP1061-20121228|1180_1 735 KIESLVEQKEEKMAALDEEMMANGSdvgKLVDLTNARNVLEEEVLELMEEWEELE 789
                 1111111111111111111111111000111111111111111111111111111 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0026      0.15       6      26 ..     110     130 ..     106     151 .. 0.87
   2 !   10.0   0.0    0.0021      0.11       2      26 ..     493     517 ..     492     522 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0026
   TIGR00231   6 ivivGhvdvGKstLlnsllkn 26 
                  ++vG  ++GKstLl+ +l +
  MMETSP1061-20121228|1180_1 110 WGLVGANGCGKSTLLKAILND 130
                 589*************99865 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0021
   TIGR00231   2 keikivivGhvdvGKstLlnsllkn 26 
                 + +ki+i G  ++GK+tLl  l+++
  MMETSP1061-20121228|1180_1 493 QGMKILIRGPNGAGKTTLLHTLRGT 517
                 579*****************99875 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0     0.017      0.92     175     201 ..     104     130 ..      83     136 .. 0.77
   2 !   12.1   0.0   0.00031     0.017     175     202 ..     491     518 ..     445     606 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.017
   TIGR03819 175 vaarlallvsGgtGsGkttLLsalLal 201
                 v+ + +  ++G+ G Gk tLL a+L  
  MMETSP1061-20121228|1180_1 104 VEPKSKWGLVGANGCGKSTLLKAILND 130
                 6667778899**************975 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00031
   TIGR03819 175 vaarlallvsGgtGsGkttLLsalLalv 202
                 +++ +++l+ G  G+GkttLL +l +++
  MMETSP1061-20121228|1180_1 491 IQQGMKILIRGPNGAGKTTLLHTLRGTL 518
                 677889*****************98875 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.3   1.3e+02    1213    1248 ..     268     303 ..     266     326 .. 0.70
   2 ?    4.7   0.1     0.018         1      32      49 ..     498     515 ..     493     524 .. 0.90
   3 !   15.2   0.0   1.3e-05   0.00071    1155    1278 ..     549     661 ..     536     666 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.3
   TIGR00606 1213 rlalaevfclnCgiialdePttnldrekieslaial 1248
                  r+++a  +  + ++  ldeP   ldr+    la  l
  MMETSP1061-20121228|1180_1  268 RVSFAKLLLSKPSLALLDEPSNHLDRSARAWLANYL 303 
                  7888888888899999**********9766665544 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.018
   TIGR00606  32 llvGPnGaGkttiiealk 49 
                 l+ GPnGaGktt++ +l+
  MMETSP1061-20121228|1180_1 498 LIRGPNGAGKTTLLHTLR 515
                 799**********99885 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 1.3e-05
   TIGR00606 1155 rgqdieyieirsdadeevsasdkrreynvrvvmlkGdtaldmrGrCsaGqkvlasllirlalaevfcln.CgiialdePttnldrekieslaialveiiksrsrqrdlqllvithdedlvellgr 1278
                  r+ d+ + + rs ad +    d +    +  + l+Gd al m G+ s G k       r+ala  f+l+   +  lde    ld e +e+l+ +l +    +       ++vi hd  + e++g 
  MMETSP1061-20121228|1180_1  549 RAVDLVTEHARSGADGDLYVTDEQARTVLGGLGLRGDKALRMVGQLSGGEKA------RVALAM-FALKpSNLYLLDEVSNHLDVECVEALSEVLSDWGDGK-----GSIVVISHDKAFCEQVGF 661 
                  566777888899999999998888888888899******************5......99**95.66651567789**************999999876544.....479***********9986 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0     0.035       1.9      18      44 ..     101     128 ..      96     132 .. 0.81
   2 !    8.5   0.0    0.0037       0.2      15      43 ..     485     514 ..     482     529 .. 0.86
   3 ?   -1.0   0.0       2.8   1.6e+02     304     328 ..     613     637 ..     600     648 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.035
   TIGR00611  18 dlelspgvn.vlvGeNgqGKtnlleaiy 44 
                 d  ++p+    lvG Ng GK  ll+ai 
  MMETSP1061-20121228|1180_1 101 DWRVEPKSKwGLVGANGCGKSTLLKAIL 128
                 556667766579**************95 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0037
   TIGR00611  15 eevdlelspgvn.vlvGeNgqGKtnlleai 43 
                 ++++l++++g+  ++ G+Ng GKt ll  +
  MMETSP1061-20121228|1180_1 485 SDIELNIQQGMKiLIRGPNGAGKTTLLHTL 514
                 68999*******5566**********9865 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 2.8
   TIGR00611 304 pilllDDvaseLDeqrreaLaelle 328
                  ++llD v   LD +  eaL e+l+
  MMETSP1061-20121228|1180_1 613 NLYLLDEVSNHLDVECVEALSEVLS 637
                 59************99999988875 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0015     0.081       9      68 ..      81     141 ..      75     155 .. 0.82
   2 ?    3.8   0.0       0.1       5.7      19      55 ..     479     515 ..     469     527 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0015
   TIGR00750   9 aitlveneepe.akellkrilpktGrahvvGltGvPGaGkstlveklieelrrrGlkvavi 68 
                 a+ lv+   ++  + ll++i  +       Gl G  G Gkstl++++ ++l + G   av+
  MMETSP1061-20121228|1180_1  81 ALRLVDVAVSRgGNTLLSNIDWRVEPKSKWGLVGANGCGKSTLLKAILNDLGNYGAEDAVL 141
                 566666666665677888888888888899*********************9999988886 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.1
   TIGR00750  19 eakellkrilpktGrahvvGltGvPGaGkstlvekli 55 
                 e++el++ i  +  +   + + G  GaGk tl++ l 
  MMETSP1061-20121228|1180_1 479 ESVELISDIELNIQQGMKILIRGPNGAGKTTLLHTLR 515
                 689999999999999999***************9986 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0027      0.15      43      72 ..     112     141 ..      95     165 .. 0.83
   2 ?    3.7   0.0      0.15       8.3      34      58 ..     490     514 ..     475     519 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0027
   TIGR03420  43 lwGesgsGksHLLqAacaaaeeagksaiyl 72 
                 l+G++g+Gks LL+A+ +++ + g++ ++l
  MMETSP1061-20121228|1180_1 112 LVGANGCGKSTLLKAILNDLGNYGAEDAVL 141
                 89***************9998887766554 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.15
   TIGR03420  34 eakaerllylwGesgsGksHLLqAa 58 
                 + +++  + + G++g Gk+ LL+ +
  MMETSP1061-20121228|1180_1 490 NIQQGMKILIRGPNGAGKTTLLHTL 514
                 567778899*************975 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.032       1.8      27      48 ..     112     133 ..      99     139 .. 0.89
   2 ?    5.8   0.0     0.045       2.5      21      43 ..     493     515 ..     480     521 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.032
   TIGR00150  27 LkGdlGaGKttlvkgllkglGi 48 
                 L G  G GK tl+k++l++lG 
  MMETSP1061-20121228|1180_1 112 LVGANGCGKSTLLKAILNDLGN 133
                 77999***************96 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.045
   TIGR00150  21 latvvlLkGdlGaGKttlvkgll 43 
                  ++ +l++G  GaGKttl+++l 
  MMETSP1061-20121228|1180_1 493 QGMKILIRGPNGAGKTTLLHTLR 515
                 5666899***********98875 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0051      0.28      34      55 ..     113     136 ..      98     143 .. 0.78
   2 ?   -1.8   0.1       3.1   1.7e+02     215     258 ..     189     235 ..     166     247 .. 0.42
   3 ?   -3.1   0.6       7.7   4.2e+02     230     276 ..     350     398 ..     336     403 .. 0.46
   4 !   13.6   0.2   6.8e-05    0.0037      20      49 ..     487     515 ..     484     532 .. 0.85
   5 ?   -1.6   0.9       2.7   1.5e+02     209     269 ..     731     790 ..     709     798 .] 0.40

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0051
   TIGR03185  34 gglNGaGKTTlLdai..qLaLYGk 55 
                  g NG+GK TlL+ai   L+ YG 
  MMETSP1061-20121228|1180_1 113 VGANGCGKSTLLKAIlnDLGNYGA 136
                 477***********9444777775 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 3.1
   TIGR03185 215 eaelkeqeekievlaqeiaa...lrkeleeaerkleslekkfeseGg 258
                   +l+  e+ +e++a++ ++   + +ele+a ++l+ ++++ e+ Gg
  MMETSP1061-20121228|1180_1 189 RSNLRRAEQGVESAATDTDSdtdSDTELERALQTLDTARDRYERVGG 235
                 22222222222222222221000233333444444444444444444 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 7.7
   TIGR03185 230 qeiaalrkeleeaerklesl..ekkfeseGgelaeereelerqqkelea 276
                 q+++ +   + e e++le++   ++f ++ g+ a+++  ++ ++k++e+
  MMETSP1061-20121228|1180_1 350 QKRDRAYAAAAEYEKNLEKAakLQAFVDKYGASATKASAAQSRVKQIEK 398
                 3333333333333333333211344555555555555555555555554 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 6.8e-05
   TIGR03185  20 vdLsvssekpiiLlgglNGaGKTTlLdaiq 49 
                 ++L++++  + iL+ g NGaGKTTlL  ++
  MMETSP1061-20121228|1180_1 487 IELNIQQGMK-ILIRGPNGAGKTTLLHTLR 515
                 6677777655.79*************9998 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 2.7
   TIGR03185 209 seiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGgelaeereeler 269
                 + i ++e  ++++eek+  l +e+ a  + + ++   l ++++ +e+e +el+ee eele+
  MMETSP1061-20121228|1180_1 731 KRIAKIESLVEQKEEKMAALDEEMMANGSDVGKLV-DLTNARNVLEEEVLELMEEWEELET 790
                 33333333333333333333333333333333332.2333333333333333333333333 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0      0.05       2.8       5      32 ..     112     139 ..     108     227 .. 0.87
   2 ?    6.6   0.0     0.033       1.8       2      23 ..     496     517 ..     495     520 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.05
   TIGR02528   5 liGsvgcGkttLtqaLkgeeikykktqa 32 
                 l+G  gcGk tL +a+ +   +y    a
  MMETSP1061-20121228|1180_1 112 LVGANGCGKSTLLKAILNDLGNYGAEDA 139
                 89************99887666655555 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.033
   TIGR02528   2 rimliGsvgcGkttLtqaLkge 23 
                 +i++ G+ g+GkttL ++L+g+
  MMETSP1061-20121228|1180_1 496 KILIRGPNGAGKTTLLHTLRGT 517
                 78999**************985 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1    0.0087      0.48     443     470 ..     113     140 ..     111     171 .. 0.77
   2 ?    5.5   0.2     0.015      0.85     441     457 ..     498     514 ..     492     518 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0087
   TIGR00929 443 fGptgsGKTvllnfllaqlqkykpltii 470
                 +G++g GK++ll+ +l+ l+ y++ + +
  MMETSP1061-20121228|1180_1 113 VGANGCGKSTLLKAILNDLGNYGAEDAV 140
                 7*********************985555 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.015
   TIGR00929 441 lIfGptgsGKTvllnfl 457
                 lI Gp+g+GKT+ll  l
  MMETSP1061-20121228|1180_1 498 LIRGPNGAGKTTLLHTL 514
                 799***********876 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0       0.4        22     149     167 ..     112     130 ..     102     134 .. 0.88
   2 !    9.1   0.0    0.0023      0.13     137     169 ..     487     519 ..     463     526 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.4
   TIGR02788 149 isGgtgsgKTTflkalvkl 167
                 ++G+ g gK T+lka+++ 
  MMETSP1061-20121228|1180_1 112 LVGANGCGKSTLLKAILND 130
                 68**************985 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0023
   TIGR02788 137 lklaiaakkniiisGgtgsgKTTflkalvkliP 169
                 ++l i+++  i+i G  g+gKTT+l++l  ++P
  MMETSP1061-20121228|1180_1 487 IELNIQQGMKILIRGPNGAGKTTLLHTLRGTLP 519
                 7899*********************99988887 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0       2.3   1.3e+02      11      30 ..     114     133 ..     112     146 .. 0.83
   2 !   10.2   0.0    0.0018     0.099       2      28 ..     492     518 ..     491     532 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 2.3
   TIGR00041  11 GidGaGKTtqlellkkllke 30 
                 G +G GK+t+l+++ + l +
  MMETSP1061-20121228|1180_1 114 GANGCGKSTLLKAILNDLGN 133
                 889*********99988876 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0018
   TIGR00041   2 kkgkfiviEGidGaGKTtqlellkkll 28 
                 ++g+ i+i G +GaGKTt+l+ l  +l
  MMETSP1061-20121228|1180_1 492 QQGMKILIRGPNGAGKTTLLHTLRGTL 518
                 78999**************99987766 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1      0.12       6.9      23      53 ..     112     142 ..     106     169 .. 0.80
   2 ?    5.8   0.0     0.038       2.1      13      42 ..     489     518 ..     482     551 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.12
   TIGR00455  23 ltGlsgsGkstianalekkLeekglrvevLD 53 
                 l G  g Gkst+ +a+ + L + g +  vL+
  MMETSP1061-20121228|1180_1 112 LVGANGCGKSTLLKAILNDLGNYGAEDAVLN 142
                 7899****************99998877763 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.038
   TIGR00455  13 kkkqksvvlWltGlsgsGkstianalekkL 42 
                 ++ q+++ + + G+ g+Gk+t+ + l   L
  MMETSP1061-20121228|1180_1 489 LNIQQGMKILIRGPNGAGKTTLLHTLRGTL 518
                 5678999***************99987665 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00079     0.044     204     242 ..     487     525 ..     479     548 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00079
   TIGR00368 204 leiaaaGghnllllGPPGsGktllakrlqgllPeltnee 242
                 +e+ +  g  +l+ GP G+Gkt l + l+g lP l+ + 
  MMETSP1061-20121228|1180_1 487 IELNIQQGMKILIRGPNGAGKTTLLHTLRGTLPLLNGDR 525
                 7788889999***********************886544 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.29        16       6      24 ..     112     130 ..     111     136 .. 0.86
   2 ?    6.4   0.0     0.024       1.3       4      22 ..     497     515 ..     494     522 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.29
   TIGR03263   6 isgpsGvGKstlvkkllee 24 
                 ++g+ G+GKstl+k++l++
  MMETSP1061-20121228|1180_1 112 LVGANGCGKSTLLKAILND 130
                 57999**********9975 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.024
   TIGR03263   4 ivisgpsGvGKstlvkkll 22 
                 i+i gp G+GK+tl+++l 
  MMETSP1061-20121228|1180_1 497 ILIRGPNGAGKTTLLHTLR 515
                 7899***********9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       375  (0.0914188); expected 82.0 (0.02)
Passed bias filter:                      223  (0.0543637); expected 82.0 (0.02)
Passed Vit filter:                       105  (0.0255973); expected 4.1 (0.001)
Passed Fwd filter:                        74  (0.01804); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              74  [number of targets reported over threshold]
# CPU time: 1.77u 0.30s 00:00:02.06 Elapsed: 00:00:01.40
# Mc/sec: 752.34
//
Query:       MMETSP1061-20121228|1181_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.24
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|1184_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1061-20121228|1183_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 1217.23
//
Query:       MMETSP1061-20121228|1186_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 323.97
//
Query:       MMETSP1061-20121228|1188_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 430.70
//
Query:       MMETSP1061-20121228|1190_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1061-20121228|1193_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.53
# Mc/sec: 234.09
//
Query:       MMETSP1061-20121228|1199_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22    8.0   4.1       0.86    6.0   0.2    2.2  3  TIGR01792 urease_alph: urease, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR01792  urease_alph: urease, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.1    0.0015       6.2      91     130 ..       4      43 ..       2      48 .. 0.87
   2 ?    6.0   0.2   0.00021      0.86      97     132 ..      26      61 ..      20      66 .. 0.84
   3 ?    3.5   0.2    0.0012         5      86     115 ..      71     100 ..      60     107 .] 0.44

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0015
   TIGR01792  91 nGkivaiGkaGnpdlmdgvdlivGastevisgegkivtaG 130
                 +  i+ +G + +  + ++v ++vGas +v  g+++i+  G
  MMETSP1061-20121228|1199_1   4 DDVILLVGPSVDGLVGEEVPILVGASVKVLVGDDVILLVG 43 
                 56788899999999999****************9998776 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00021
   TIGR01792  97 iGkaGnpdlmdgvdlivGastevisgegkivtaGgl 132
                 +G +    + d+v l+vG s ev  ge+++v  G l
  MMETSP1061-20121228|1199_1  26 VGASVKVLVGDDVILLVGPSVEVLVGEEVVVLVGTL 61 
                 566666667899*******************99987 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.0012
   TIGR01792  86 diGiknGkivaiGkaGnpdlmdgvdlivGa 115
                 di + +  i+ +G + +  + ++v ++vGa
  MMETSP1061-20121228|1199_1  71 DIRVGEDVILLVGPSVEVLVGEEVPILVGA 100
                 333333344444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 641.95
//
Query:       MMETSP1061-20121228|1196_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       273  (0.0665529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1919.34
//
Query:       MMETSP1061-20121228|1195_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 2313.69
//
Query:       MMETSP1061-20121228|1197_1  [L=837]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.50
# Mc/sec: 2209.50
//
Query:       MMETSP1061-20121228|1201_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 389.02
//
Query:       MMETSP1061-20121228|1200_1  [L=724]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 2222.33
//
Query:       MMETSP1061-20121228|1202_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.37
# Mc/sec: 934.63
//
Query:       MMETSP1061-20121228|1203_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-08   32.3   0.0    2.9e-08   31.7   0.0    1.2  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   7.1e-12   2.9e-08     128     217 ..     156     245 ..     152     249 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 7.1e-12
   TIGR02933 128 hlLltvneddreavrerieallrrlrakreafaelaerhseCPt.alegGlLGwvsrGlLypeLdaaLfqlae..geLsavieselGwhlLlC 217
                 h+L+    d+++   + + +l   l ++ ++f   a+++s+CP+ a + G LG  ++ ++ p  d+  f  +   +    +i++  G+hl++ 
  MMETSP1061-20121228|1203_1 156 HILV---KDTSPKTLKALIGLGETLGTDAKTFGLTAQQYSQCPSsAAQKGFLGRFGKSVMAPAFDEVCFDPETplNTTVGPIQTRFGYHLIYI 245
                 5554...5788888899999999********************6489**********************977533677789*********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1269.13
//
Query:       MMETSP1061-20121228|1205_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-170  564.9   1.7   4.5e-170  564.4   1.2    1.2  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
      1e-91  306.1   7.4    1.8e-91  305.3   5.1    1.3  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
      2e-71  238.9   8.0    2.9e-71  238.4   5.5    1.2  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    1.3e-68  229.5   5.2    1.7e-68  229.1   3.6    1.1  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    5.9e-68  227.4   7.9    2.6e-67  225.3   5.5    1.7  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    1.2e-65  219.9   7.3      3e-65  218.7   5.1    1.5  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
      2e-63  212.7   9.8    1.1e-62  210.3   6.8    1.8  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
      9e-53  177.5   8.6    1.6e-52  176.6   5.9    1.3  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    5.5e-48  161.6   6.1    1.6e-47  160.0   4.2    1.6  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    3.4e-17   59.9   2.8    9.8e-10   35.3   0.6    3.0  3  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  564.4   1.2  1.1e-172  4.5e-170       4     528 ..      18     563 ..      15     565 .] 0.92

  Alignments for each domain:
  == domain 1    score: 564.4 bits;  conditional E-value: 1.1e-172
   TIGR02346   4 sllkeGyrhlsglee...avlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelir.lGl.spseiikGyelalkkalevL.........eelvvlevkdlee....keel.ikalkaslsskqlgnedilaelvakaiitvlPknsek..fnvdnirvvkllGgslsdsevlkGlvlkreaegsvk.rvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeed.skistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiimakpaGGPkke 528
                  +lk+G++h+ + ++    v ++i++  els+++  slGP+g+nkl++nhl k +vt+D+a il+e+ev+hPaakll la ++qe+e+GDgtnlvl++ gelL+ + +l++ +G  + ++i++G++la  k l++L         +  vv +  + ++     +el +k+l ++l skq+g+edil++l+ +a+  vl + +++   n  +ir+vk+lGgs+s+s  l+G+v +r   ++ + ++k+ak++v+++++++++te+kGtvL+kna++l +y+++ee+k+e++i+ ia++gvkv+v+gg++sd+alh++eky+++ lk+ssk+elrrlc++ gatalvrl+ap+ ee+G +++ + + +g+++vtv++++ +  ski+t+vLr st+++l+d+ ra++DGv +v++++kd+r++ G+ga e+e a +l ++a++ +gleqyai+ fa++ e + rtlaenaG +a +vls++ aah +gn  +g+di+++    +++k  ++yDl+  k++a+kla eaa+t+LkvDqiim+k+aGGPk++
  MMETSP1061-20121228|1205_1  18 GMLKDGHEHFADDDGggaVVARSIASACELSRMLSSSLGPQGRNKLIVNHLGKHIVTSDCASILKEIEVEHPAAKLLELAVEQQETECGDGTNLVLTFGGELLTSTLDLMKiMGWkHKTDIMEGFHLASTKLLNELlvspkdgesNGCVVSTLPHPSSspeaLQELkEKVLVPVLGSKQYGSEDILSDLIVQACRIVLNDGETNevLNPSSIRTVKILGGSVSQSACLQGFVAQRGVATTRTaSEKNAKIVVYASGIEASSTEAKGTVLMKNADDLKNYNRTEEAKMEEIIQGIAETGVKVVVTGGAISDMALHFIEKYELIALKLSSKWELRRLCQATGATALVRLGAPTAEEMG-CATTTQKIVGGRTVTVFENDLDGkSKIATLVLRASTSSVLNDLVRAVEDGVHAVQMACKDGRIVYGGGACEMECAVQLGRLADQHPGLEQYAIRAFAKSLECVGRTLAENAGWDAVQVLSDMRAAHVNGNADVGVDIQNDPG-STSMKGCSVYDLMYVKRSALKLAIEAATTILKVDQIIMSKRAGGPKMP 563
                 79********98875332588****************************************************************************************9867974678*********9888776645555443333455555544441111455534788899***********************998766656999**************************97665543999**************************************************************************************************************.56667788**********997766******************************************************************************************************************9987.59********************************************97 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.3   5.1   4.3e-94   1.8e-91      16     520 ..      35     554 ..      19     555 .. 0.91

  Alignments for each domain:
  == domain 1    score: 305.3 bits;  conditional E-value: 4.3e-94
   TIGR02339  16 dalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqd..ihPtviveGyrkaaekalevideiaekidve................dkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvega.knakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeied.mlelgvieplkvkeqaiksateaatlilriDdviaa 520
                  ++   ia+a  ++ +++s+lGP+G +k++v+ lG  ++t D a ilke+++ehPaakll  + + q++e gDGt  +  + GeLl+ + dL++     h t i+eG+++a++k l+ +    ++ + +                 +el +kv    l sk+ +  ++d l++l+v+a + v++   + + +++  +i+++k  Ggs++++  ++G v  + v  +    + +naki++    +e   te +  + +++ d lk++   eea+++e+++ ia++G++vv++   i d+a h+++k  ++a++   k ++++l +atGa  +  l   +++++G a + ++   g   +vf ++   ++k  t++lr +t  v+++l Ra+eD +++v+ + +dg++v GgGa e+e a +l   a++  G eq a++afa++le + r+laenaG d++++l ++Ra+h + gn+ +gvd+++   +  m    v + + vk+ a+k a eaat il++D++i +
  MMETSP1061-20121228|1205_1  35 AVVARSIASACELSRMLSSSLGPQGRNKLIVNHLGKHIVTSDCASILKEIEVEHPAAKLLELAVEQQETECGDGTNLVLTFGGELLTSTLDLMKIMgwKHKTDIMEGFHLASTKLLNELLVSPKDGESNgcvvstlphpssspeaLQELKEKVLVPVLGSKQYG--SEDILSDLIVQACRIVLNDG-ETNEVLNPSSIRTVKILGGSVSQSACLQGFVAQRGV-ATTRTASEKNAKIVVYASGIEASSTEAKGTVLMKNADDLKNYNRTEEAKMEEIIQGIAETGVKVVVTGGAISDMALHFIEKYELIALKLSSKWELRRLCQATGATALVRLGAPTAEEMGCATTTQKIVGGRTVTVFENDLdGKSKIATLVLRASTSSVLNDLVRAVEDGVHAVQMACKDGRIVYGGGACEMECAVQLGRLADQHPGLEQYAIRAFAKSLECVGRTLAENAGWDAVQVLSDMRAAHVN-GNADVGVDIQNDPGSTsMKGCSVYDLMYVKRSALKLAIEAATTILKVDQIIMS 554
                 45678899****************************************************99999***************************9853227************9998877654444444447777788888888776567788999999*****95..89***********7777665.88899*************************988765.555667789**************************************************************************************************************8888776666666677777763457889***************************************************************************************************6.9*********98766659999*****************************986 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.4   5.5   7.2e-74   2.9e-71      11     516 ..      37     554 ..      27     555 .. 0.89

  Alignments for each domain:
  == domain 1    score: 238.4 bits;  conditional E-value: 7.2e-74
   TIGR02342  11 rtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekg..ihptiisesfqsaadealkilkelsipvdls..............drealiksattslsskvvs.qy..ssllaplavdavlkv.idsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrk.ggitdileeevlqpllvtksavtlasetvrsilkiddivlt 516
                    +i +a  ++ ++ +slGp+G +kli ++ G+ i+t d a+ilk++ev hpaakll    + q+ e GdGt  v+ + G ll ++  l++     h t i e+f+ a  + l+ l    +    +                eal +  +  l   + s qy   ++l+ l v+a   v  d+e+++  +   i+ vk lGg + ++  ++G v ++ +  ++++    ++aki +    + a  t+ +  v++++  ++    + e + + ++++ i+++g+ v++        a++d+alhf++k +++ +k   + e+  ++++ G++ +  +   ta+++G a +++++  + +  v    +  ++k  ++++r s + v+++  r++ d +  ++   k+  ++ GGGa e+e a++l ++a++  G e+y +rafa++le +  tlaenaG ++++v++++r +h +G+   G+++++  g t ++  +v   + v++sa++la e+  +ilk+d i+++
  MMETSP1061-20121228|1205_1  37 VARSIASACELSRMLSSSLGPQGRNKLIVNHLGKHIVTSDCASILKEIEVEHPAAKLLELAVEQQETECGDGTNLVLTFGGELLTSTLDLMKIMgwKHKTDIMEGFHLASTKLLNELLVSPKDG--EsngcvvstlphpssSPEALQELKEKVLVPVLGSkQYgsEDILSDLIVQACRIVlNDGETNEVLNPSSIRTVKILGGSVSQSACLQGFVAQRGVATTRTA--SEKNAKIVVYASGIEASSTEAKGTVLMKNADDLKNYNRTEEAKMEEIIQGIAETGVKVVV-----TGGAISDMALHFIEKYELIALKLSSKWELRRLCQATGATALVRLGAPTAEEMGCATTTQKIVGGRTVTVFENDLDGKSKIATLVLRASTSSVLNDLVRAVEDGVHAVQMACKDGRIVYGGGACEMECAVQLGRLADQHPGLEQYAIRAFAKSLECVGRTLAENAGWDAVQVLSDMRAAHVNGNADVGVDIQNdPGSTSMKGCSVYDLMYVKRSALKLAIEAATTILKVDQIIMS 554
                 5566778888888999*****************************************9988999*************************998532369***********887765443222222..123566667777776566666666665555555523432579********98762577888888999**********************99998875554..5679*****************************************************996.....56899*******************************************************9987777777788999******************************************************************************************************************97358899**********************************98 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.1   3.6   4.1e-71   1.7e-68      12     522 ..      29     556 ..      20     557 .. 0.88

  Alignments for each domain:
  == domain 1    score: 229.1 bits;  conditional E-value: 4.1e-71
   TIGR02345  12 dtsqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakpliee.g.lhpqliiralrealklaieklkeiavelde.e...............ksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk.....liGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftgg..ekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdietee.ildaleafvwePllvkknalkaateaaatilsvdetikakk 522
                 d   G + +   i ++ +++ +l + lGP+G +kliv++    +v+ d a ilk++++ hPaakll    + q+ e GdGt  v+ + gell ++ +l++  g  h+  i+++++ a +  +++l    v+ ++ e                +  +e+ ek+    l sk    +++ +s ++v+a + + +d   ++      i   k+ GG++++s  ++G   ++  + +    +    +n ki++    +e  + +    + +++++d k+   +e + + e ++ i e+G +vv++  +i d+a  +  + ++ +    s+ +l+r+ +atGa+ l    + +a+++G ca   +k +G +   +f++    k+k +tl+lr ++  +l++  r+++d +  v+ a k+ +iv GGGa e+e +  l + + +  g +q  i+a+ak+le + r+laenaG+d++++l ++r++h + g++  Gvdi+++   + +    v++ + vk+ alk a+eaa+til+vd+ i+ k+
  MMETSP1061-20121228|1205_1  29 DDDGGGAVVARSIASACELSRMLSSSLGPQGRNKLIVNHLGkHIVTSDCASILKEIEVEHPAAKLLELAVEQQETECGDGTNLVLTFGGELLTSTLDLMKImGwKHKTDIMEGFHLASTKLLNEL---LVSPKDgEsngcvvstlphpsssPEALQELKEKVLVPVLGSKQYG-SEDILSDLIVQACRIVLNDGETNEvlnpsSIRTVKILGGSVSQSACLQGFVAQRGVATT----RTASEKNAKIVVYASGIEASSTEAKGTVLMKNADDLKNYNRTEEAKMEEIIQGIAETGVKVVVTGGAISDMALHFIEKYELIALKLSSKWELRRLCQATGATALVRLGAPTAEEMG-CATTTQKIVGGRTVTVFENDldGKSKIATLVLRASTSSVLNDLVRAVEDGVHAVQMACKDGRIVYGGGACEMECAVQLGRLADQHPGLEQYAIRAFAKSLECVGRTLAENAGWDAVQVLSDMRAAHVN-GNADVGVDIQNDPgSTSMKGCSVYDLMYVKRSALKLAIEAATTILKVDQIIMSKR 556
                 5555555566678888899******************997769***********************99999***************************985232466678888887766555554...444444224466777778766544455667778888888999865.6789********9988766555555666678888999************9999877643....445668****************************************************************************999999***************************9.9999*************9862236788*****************************************************************************************************.99*********99677777789*****************************9886 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.3   5.5   6.4e-70   2.6e-67      17     522 ..      36     554 ..      27     557 .. 0.85

  Alignments for each domain:
  == domain 1    score: 225.3 bits;  conditional E-value: 6.4e-70
   TIGR02344  17 aqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqde.evGdGttsviilaGellaaaepflekn..ihptvivraykkaledalkvl.......eelsipvdv.....edeakllkl....vkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdp..kactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGet.GkivdmkekgiweplavklqtiktaiesavlllriddivsG 522
                 +    i +a  ++ ++ ++lGp+   k++++ lG  ++t d  +il+ei+v+hpaak l+el+  q+e e GdGt  v+ + Gell+++  +++     h t i+++++ a ++ l+ l       e     v       ++ ++l++l    +   +g+k  +  +d+++dl ++a ++v ++ +++   ev     ++  ki GG++++sa l+G +  + v+ ++     +n +iv+  + +e   +e++  v +++ +d+++  + ee +++++ + i ++  ++v+t   +sd+a h++ k ++ a++   k +  r+ +++Gat + r    + +++G        k +G    t +++  d   k  t++lr ++  vln++ r ++d+++ ++  + ++++v+GGGa e++ +v+l + a +  g+eq+ ++a a++le++ rtl++n+G ++++ l+++ra h ++ ++ +G+d ++    + mk  ++++ + vk  ++k aie+a+ +l++d+i+  
  MMETSP1061-20121228|1205_1  36 VVARSIASACELSRMLSSSLGPQGRNKLIVNHLGKHIVTSDCASILKEIEVEHPAAK-LLELAVEQQEtECGDGTNLVLTFGGELLTSTLDLMKIMgwKHKTDIMEGFHLASTKLLNELlvspkdgESNGCVVSTlphpsSSPEALQELkekvLVPVLGSKQYG-SEDILSDLIVQACRIVLNDGETN---EVLNPSSIRTVKILGGSVSQSACLQGFVAQRGVATTRTAS-EKNAKIVVYASGIEASSTEAKGTVLMKNADDLKNYNRTEEAKMEEIIQGIAETGVKVVVTGGAISDMALHFIEKYELIALKLSSKWELRRLCQATGATALVRLGAPTAEEMGC--ATTTQKIVGGRTVTVFENDLDGksKIATLVLRASTSSVLNDLVRAVEDGVHAVQMACKDGRIVYGGGACEMECAVQLGRLADQHPGLEQYAIRAFAKSLECVGRTLAENAGWDAVQVLSDMRAAHVNG-NADVGVDIQNdPGSTSMKGCSVYDLMYVKRSALKLAIEAATTILKVDQIIMS 554
                 5566788999999*******************************************9.789987665549*******************9987753227*******9988866665544222222112222222212111444555544000034445555444.379*************9998443...56667889999**********************9998765.69*******************************************************************************************************99999985..556677899999999998776511679***************************************************************************************************99.5889998665135689********************************9865 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.7   5.1   7.2e-68     3e-65      31     531 ..      39     554 ..      30     555 .. 0.87

  Alignments for each domain:
  == domain 1    score: 218.7 bits;  conditional E-value: 7.2e-68
   TIGR02343  31 sniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklld.kG.ihpikiaeGfekaakvavekl.....eeiaeeisvded.........nketllkaaktslgskivskskrrlaeiavdavlav.adlerkdv.dfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdclee.Gtndmkelkvletligkkqqillatqlvkmilkiddvisd 531
                   ia+a  ++++l++slGp+G +k+++++ g+  vt d a+il++++++++ akll    + q+ e GdGt  v+ + + ll  + +l++  G  h   i eGf+ a+   +++l     +  ++   v++           +e   k     lgsk  + s++ l+++ v+a   v  d e ++v +   i+  +  Ggs+++++ ++G + ++ ++  +   e k+aki + +   e     +k  + ++++++ k+ ++ e+ k+ee+i+ i ++G ++v+      d a h++ + +l a++  +  el  +  atg   + r+   ++e++G a+  + k +G     ++  +  ++sk  t+++r +   ++++  r+++d + +v+   kd rivyGGGa+e+ c++ + + ad+ +g+eqyairafa++le +  +laen+G d +++ls+++a  ++  n+ +Gvd +++ G++ mk  +v++ +  k+  ++la +  + ilk+d++i++
  MMETSP1061-20121228|1205_1  39 RSIASACELSRMLSSSLGPQGRNKLIVNHLGKHIVTSDCASILKEIEVEHPAAKLLELAVEQQETECGDGTNLVLTFGGELLTSTLDLMKiMGwKHKTDIMEGFHLASTKLLNELlvspkDGESNGCVVSTLphpssspeaLQELKEKVLVPVLGSKQ-YGSEDILSDLIVQACRIVlNDGETNEVlNPSSIRTVKILGGSVSQSACLQGFVAQRGVATTRTASE-KNAKIVVYASGIEASSTEAKGTVLMKNADDLKNYNRTEEAKMEEIIQGIAETGVKVVVTGGAISDMALHFIEKYELIALKLSSKWELRRLCQATGATALVRLGAPTAEEMGCATTTQ-KIVGGRTVTVFENDLDGKSKIATLVLRASTSSVLNDLVRAVEDGVHAVQMACKDGRIVYGGGACEMECAVQLGRLADQHPGLEQYAIRAFAKSLECVGRTLAENAGWDAVQVLSDMRAAHVN-GNADVGVDIQNDpGSTSMKGCSVYDLMYVKRSALKLAIEAATTILKVDQIIMS 554
                 46888889999********************************************9888999***********************999873342699**********988877773332233333333322212222111122222334445677775.567899*******9855516888877548899**999*********************99987765.89*************************************************************************************************************999655.556766666666667899****************************************************************************************************9987.5789****986549************************************976 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.3   6.8   2.7e-65   1.1e-62       7     528 ..      30     553 ..      25     558 .. 0.85

  Alignments for each domain:
  == domain 1    score: 210.3 bits;  conditional E-value: 2.7e-65
   TIGR02340   7 rksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrk..vhPtsvisGyrlalkeavkyi......keklavsveelgkealinvaktslsskii....sl....esdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikg.tk.kkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnve.aGvlePavskvkslkfateaaitilriddlik 528
                  + G  v+ + + ++++++ ++ +slGP+G +k++v+ +G  ++t d a ilk++evehPaak+l    ++q+ e GdGt  v+ +  ell  + +l+k     h t +++G++la  + ++ +       e+    v++l++ +    a   l  k++    ++      d++s+l+v+a   v    e++e+  P  ++  +k  G+s+++s  ++G++ +  va+    +  k+aki++   +++    +   +++++++++l++  + e   + e i+ i ++G +vv+t + i d+al  +   +++a++  +k +l+r+ +atGat ++ l     ee   a         +++ ++   + ++++  + k+k a+++lr + + +l+++ r++ d + +v+ +   +++v GgGa+e+  ++ l +la      eq ai +fa++l  + ++la na+ d+ ++++++ra h +  +         +G+d++n+    +++   v + +  k   lk a+eaa til++d++i 
  MMETSP1061-20121228|1205_1  30 DDGGGAVVARSIASACELSRMLSSSLGPQGRNKLIVNHLGKHIVTSDCASILKEIEVEHPAAKLLELAVEQQETECGDGTNLVLTFGGELLTSTLDLMKIMgwKHKTDIMEGFHLASTKLLNELlvspkdGESNGCVVSTLPHPSSSPEALQELKEKVLvpvlGSkqygSEDILSDLIVQACRIVLNDGETNEVLNP-SSIRTVKILGGSVSQSACLQGFVAQRGVATTRTAS-EKNAKIVVYASGIEASSTEAKGTVLMKNADDLKNYNRTEEAKMEEIIQGIAETGVKVVVTGGAISDMALHFIEKYELIALKLSSKWELRRLCQATGATALVRLGAPTAEEMGCA-------TTTQKIVGGRTVTVFENdLDgKSKIATLVLRASTSSVLNDLVRAVEDGVHAVQMACKDGRIVYGGGACEMECAVQLGRLADQHPGLEQYAIRAFAKSLECVGRTLAENAGWDAVQVLSDMRAAHVNGNA--------DVGVDIQNDPGSTSMKgCSVYDLMYVKRSALKLAIEAATTILKVDQIIM 553
                 567889999******************************************************986666999*************************8754227************998876442222222344455677766544444444444444311112111113599***********9999999999888.689999999*******************9988665.59*********************************99999999**************************999999****************************98888775433.......33344444444444443133146899*************************************************************************************************987654........57******987665542789**************************996 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.6   5.9   3.9e-55   1.6e-52      19     514 ..      40     554 ..      25     558 .. 0.86

  Alignments for each domain:
  == domain 1    score: 176.6 bits;  conditional E-value: 3.9e-55
   TIGR02341  19 sfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnk..kihpqtiiegyrlatkaalealkksavdnssdkvkfr.........edll....kiarttlsskilsqdkdhfaklavda..vlrlkgstn..l..eaiqiikklggklddsyldegfllekkigvnqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfsgvklg..eactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleeg.eiadlrklgivesyklkravvssaaeaaevllrvdniika 514
                 s+  a  +  ++ s+lgp+g +k+++      + +vt d a+ilk+i ++ paak+l    + q+ e gdgt  v  +  ell  +  l++     h   i+eg+ la++  l+ l  s  d  s+ + +          e l     k+    l+sk      d +++l v+a  ++   g tn  l   +i+ +k+lgg++++s   +gf+ ++ + + +    +naki++  +++++      g+   + ++  l + +++e  km e ++ i + ++ v +    i +    ++ + ++ a++ +    + rl+  tg      +  p   ++g      + ++g   +  f     g  +  t+vlr +t+ +l++  r++ d +  +    k+ r+v+ggg++e+  a  + + a++ +g +  a+ afak+l+ +   la+nag+d+ ++++ +raah +gn  +g+d+++    + ++   + + + +kr+ +  a eaa  +l+vd+ii +
  MMETSP1061-20121228|1205_1  40 SIASACELSRMLSSSLGPQGRNKLIVNHLG--KHIVTSDCASILKEIEVEHPAAKLLELAVEQQETECGDGTNLVLTFGGELLTSTLDLMKImgWKHKTDIMEGFHLASTKLLNELLVSPKDGESNGCVVStlphpssspEALQelkeKVLVPVLGSKQYG-SEDILSDLIVQAcrIVLNDGETNevLnpSSIRTVKILGGSVSQSACLQGFVAQRGVATTRTASEKNAKIVVYASGIEASSTEAKGTV-LMKNADDLKNYNRTEEAKMEEIIQGIAETGVKVVVTGGAISDMALHFIEKYELIALKLSSKWELRRLCQATGATALVRLGAPTAEEMGCA-TTTQKIVGGRTVTVFENDLDGksKIATLVLRASTSSVLNDLVRAVEDGVHAVQMACKDGRIVYGGGACEMECAVQLGRLADQHPGLEQYAIRAFAKSLECVGRTLAENAGWDAVQVLSDMRAAHVNGNADVGVDIQNDpGSTSMKGCSVYDLMYVKRSALKLAIEAATTILKVDQIIMS 554
                 5666777888999**********9986654..889*********************9999999**********************999877644679999*********9999999988877666644332111111111334400014444455565554.468999***9994434446777643322689******************************9*********************9985.5678899*****************************************************99*************************955.55555677777777877666611568*************************************************************************************************************9862467899999****************************975 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   4.2     4e-50   1.6e-47      18     525 ..      37     554 ..      28     561 .. 0.84

  Alignments for each domain:
  == domain 1    score: 160.0 bits;  conditional E-value: 4e-50
   TIGR02347  18 lkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlie..eglhPrilteGleiakkealefl.eklki..............kkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeee...idlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevknPks..vtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletge.sivaelkgiwdnysvkkqllssatviasqlllvdevlra 525
                 ++ ++ +a  l+ +l + lGP+G  k++v+  G+  +t d   +lke+++ hP+a+l+  a   q+   GdGt  ++ + gell  +  l++     h   ++eG+ +a +++l+ l  + k                 + e  +el ++v   +l  k      d l++ +v+a +++ +d+e+   ++   +  +++   + ++ + ++G+v   G+       + kn+ i++    +e   te   +++ ++a++ ++  ++e   +++ ++ i e   k          vv+    i  ++l  + k +++al+   + +l rl  a+G +al  +   t e +G a    ++++g    t  e+  + ks   t+++++++   l+ +  av dG+ av+ a +d+ +v G ga e+ ++ +l + + +  G ++ ++ afa++l  + ++l+en+G+d+++vl ++++++ +++  vgvd++ +  s+  +   ++d + vk+ +l+ a   a+ +l vd+++ +
  MMETSP1061-20121228|1205_1  37 VARSIASACELSRMLSSSLGPQGRNKLIVNHLGKHIVTSDCASILKEIEVEHPAAKLLELAVEQQETECGDGTNLVLTFGGELLTSTLDLMKimGWKHKTDIMEGFHLASTKLLNELlVSPKDgesngcvvstlphpSSSPEALQELKEKVLVPVLGSKQ-YGSEDILSDLIVQACRIVLNDGETnevLNPSSIRTVKILGGSVSQSACLQGFVAQRGVATTRT-ASEKNAKIVVYASGIEASSTEAKGTVLMKNADDLKNYNRTEEAKMEEIIQGIAETGVK----------VVVTGGAISDMALHFIEKYELIALKLSSKWELRRLCQATGATALVRLGAPTAEEMGCATTT-QKIVGGRTVTVFENDLDGKSkiATLVLRASTSSVLNDLVRAVEDGVHAVQMACKDGRIVYGGGACEMECAVQLGRLADQHPGLEQYAIRAFAKSLECVGRTLAENAGWDAVQVLSDMRAAHVNGNADVGVDIQNDPgSTSMKGCSVYDLMYVKRSALKLAIEAATTILKVDQIIMS 554
                 566789999***************************************************************************99988776525568899***********997542443322111111222221112223334444455555555553.445899************999877333555679999999999***************987665.55699***************************98887777765555555555444333..........5666678*************************************************99865.78899999999999887777447*************************************************************************************************************98741344455679**************************9954 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   1.6e-08   6.4e-06      21     126 ..      47     150 ..      38     167 .. 0.76
   2 ?   -1.4   0.0      0.32   1.3e+02     365     387 ..     350     372 ..     345     378 .. 0.90
   3 !   35.3   0.6   2.4e-12   9.8e-10     374     523 ..     400     555 ..     395     557 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 1.6e-08
   TIGR02348  21 ladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGl..knvaaGanpielkrGiekavekvv 126
                 l++ ++  lGP+grn ++  + G+  +t d  ++ keie+e++     akl++ + ++ +  +GdGt     +   ++   l   ++       ++  G   a +k++
  MMETSP1061-20121228|1205_1  47 LSRMLSSSLGPQGRNKLIVNHLGKHIVTSDCASILKEIEVEHP----AAKLLELAVEQQETECGDGTNLVLTFGGELLTSTLdlMKIMGWKHKTDIMEGFHLASTKLL 150
                 56667789*******************************9877....68999999999999******87766666666554411344444555555555555555555 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.32
   TIGR02348 365 erlaklaGGvavikvGaatetel 387
                  rl + +G  a++++Ga t  e+
  MMETSP1061-20121228|1205_1 350 RRLCQATGATALVRLGAPTAEEM 372
                 589999*************9998 PP

  == domain 3    score: 35.3 bits;  conditional E-value: 2.4e-12
   TIGR02348 374 vavikvGaatetelkekkarvedalnatraaveeG.ivaGGGvallraaeklee.lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkek...kdeevGfnaatde.yedlveaGiidpakvtrsalqnaasiagllltteavvadk 523
                 +a + + a+t + l +    ved ++a + a ++G iv GGG+  +++a +l + ++++   e+  ++   ++le   r++aenaG d+  v+ +++++    +++vG + ++d   + +  + + d + v rsal+ a+  a+ +l  + ++  k
  MMETSP1061-20121228|1205_1 400 IATLVLRASTSSVLNDLVRAVEDGVHAVQMACKDGrIVYGGGACEMECAVQLGRlADQHPGLEQYAIRAFAKSLECVGRTLAENAGWDAVQVLSDMRAAhvnGNADVGVDIQNDPgSTSMKGCSVYDLMYVKRSALKLAIEAATTILKVDQIIMSK 555
                 56777789999999999999**************98899***************44555558999****************************99988633346799***9998626789999************************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.63u 0.18s 00:00:00.81 Elapsed: 00:00:00.83
# Mc/sec: 898.48
//
Query:       MMETSP1061-20121228|1207_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1358.21
//
Query:       MMETSP1061-20121228|1210_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.27    7.3   8.6       0.29    7.2   6.0    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        3.6    2.8   9.2        4.7    2.4   6.4    1.2  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
        8.7    2.5  33.8         11    2.2  23.4    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   6.0   0.00021      0.29     317     423 ..     210     366 ..      11     380 .] 0.44

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00021
   TIGR00934 317 s.........................................................qqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknf..kkreanlklfeksryakksdrneedngnkkdasksneseevsld 423
                                                                           +        +k+   +++++ +++++++  +++++e+ +r+k+ ++  ek+ ++  ++k+++  +k++ +lkl e+ + +++ +++ e++++  +++++   +  +l+
  MMETSP1061-20121228|1210_1 210 AmatpestgipalpaefwrrcicmanisgvviaasslynpntnkgqlviralgglkkpR-------GSKVA--EQKKKKKQEQLRKLLQQQQHEQEEREKELEQQKEKKRQEYLEHKRKMeqQKEKEQLKLLERQQQERERQEQLEQKRQLEQQAQKERLKLLKLQ 366
                 03333333333333333333333333333333333333333333444433332222221.......11111..122223333344444444444444444444443333333322222220022233344444444444444444444432222222222222222 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   6.4    0.0035       4.7     684     780 ..     238     333 ..     227     368 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.0035
   TIGR00956 684 vvvilllefnkgakkkgeilvfkkgelkkakkkeeeseskkndieagevlkstdltdeseevneeveeeke.sgeeifewrdltyevkikkekrvlLd 780
                  vvi+++ + +++++kg++++   g lkk + +++ +++kk+  e+ ++l + + ++e+ee ++e e++ke + +e  e +    e++ +ke+++lL+
  MMETSP1061-20121228|1210_1 238 GVVIAASSLYNPNTNKGQLVIRALGGLKKPRGSKVAEQKKKKKQEQLRKLLQ-QQQHEQEEREKELEQQKEkKRQEYLEHK-RKMEQQKEKEQLKLLE 333
                 6788888999999999999999999888888777777777666666655444.4445555555555555552223333333.4678888888888886 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  23.4     0.008        11      35     139 ..     270     377 ..     233     380 .] 0.52

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.008
   TIGR03319  35 kkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeek....ldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLe 139
                 +k+ e++kk+ +++ ++ l ++++e+++  +ele++ +++r+e  +++++++q++ek    l +++++ ++++e+le+k+ +le+++++ + k  +l++++ke++e+Le
  MMETSP1061-20121228|1210_1 270 SKVAEQKKKKKQEQLRKLLQQQQHEQEEREKELEQQKEKKRQEYLEHKRKMEQQKEKeqlkLLERQQQERERQEQLEQKR-QLEQQAQKERLKLLKLQQQEKERQEQLE 377
                 45555555555555555666666666666666666666666666666666555544311112222222233333333222.2333333333333333333334444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       891  (0.217211); expected 82.0 (0.02)
Passed bias filter:                      239  (0.0582643); expected 82.0 (0.02)
Passed Vit filter:                        72  (0.0175524); expected 4.1 (0.001)
Passed Fwd filter:                        24  (0.0058508); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.48
# Mc/sec: 1044.91
//
Query:       MMETSP1061-20121228|1209_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-39  133.2   1.1    1.9e-39  132.6   0.8    1.3  1  TIGR01071 rplO_bact: ribosomal protein L15


Domain annotation for each model (and alignments):
>> TIGR01071  rplO_bact: ribosomal protein L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.8   4.7e-43   1.9e-39       1     143 [.      67     226 ..      67     227 .. 0.95

  Alignments for each domain:
  == domain 1    score: 132.6 bits;  conditional E-value: 4.7e-43
   TIGR01071   1 kLeeLkpakgakkkkkrvgRGigsGkGktsgrGqkGqkaRsggkvrlgFEGGqtPlyrrlPkrgfsnk.lkkelevvnvekleklfkdg............evvtlekLlekklikkknkl..vKvlgkgk..lekkltvkaekvsksakakiekaggsv 143
                 kL+ L+++ ga kkk+rvgRGigs kGktsgrG+kG+kaR+gg+v l+FEGGqtP+y+ lPkrgf+nk  k+ + ++n+++l+  ++ g             v ++++Ll+++++++++ +  +K+l++gk  l+++++++ +++s+sa  ++e+ gg+v
  MMETSP1061-20121228|1209_1  67 KLNMLQQNPGAVKKKRRVGRGIGSSKGKTSGRGHKGTKARAGGSVPLTFEGGQTPFYKLLPKRGFTNKrHKADMVSLNIGTLQDYIDMGrlpvdktnddsvPVWNMKDLLDAGMFTTSSVKsgIKLLAEGKerLKTPFKLEISRASESAIDAVEAIGGEV 226
                 699*****************************************************************9999****************9*********8877889*********998765558*******999*************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1422.08
//
Query:       MMETSP1061-20121228|1212_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|1211_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-42  139.9   0.1    7.4e-42  139.4   0.0    1.2  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
      1e-10   39.6   0.0    3.8e-10   37.7   0.0    2.0  2  TIGR02181 GRX_bact: glutaredoxin 3
    1.5e-10   39.0   0.0    2.9e-10   38.1   0.0    1.5  1  TIGR02180 GRX_euk: glutaredoxin
    2.2e-07   28.6   0.0    4.1e-07   27.7   0.0    1.4  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
      8e-07   26.8   0.0    1.3e-06   26.2   0.0    1.3  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    0.00067   18.0   0.0     0.0019   16.5   0.0    1.7  2  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4   0.0   1.1e-44   7.4e-42       2      97 ..     103     198 ..     102     200 .. 0.98

  Alignments for each domain:
  == domain 1    score: 139.4 bits;  conditional E-value: 1.1e-44
   TIGR00365   2 kekikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkll 97 
                 +e i+++v++n+v+lymkG+p++p+CGfsak+vq l++ gv+f++vnvl+ ++ire++k+++ WPtiPqly++ge++GG div e++esgelk++l
  MMETSP1061-20121228|1211_1 103 IEMIQQHVNDNPVMLYMKGNPSMPMCGFSAKIVQTLQTEGVDFSSVNVLDYPSIREGVKKFASWPTIPQLYINGEFIGGNDIVSEMHESGELKEIL 198
                 589******************************************************************************************987 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.3   8.9e+02      25      45 ..      15      35 ..      10      38 .. 0.78
   2 !   37.7   0.0   5.5e-13   3.8e-10       6      80 .]     125     198 ..     115     198 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.3
   TIGR02181 25 efeeievdkdkeareemiers 45
                +++ i+ ++ +++++ m++r+
  MMETSP1061-20121228|1211_1 15 QYNTIQYTNTNTNTKTMLSRA 35
                577788888888888888886 PP

  == domain 2    score: 37.7 bits;  conditional E-value: 5.5e-13
   TIGR02181   6 kksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigdvhvGGcddLlaleregkLdkLL 80 
                  ++C+++++  ++L+++gv+f+ ++v + ++ re + + +    t+PQ++i+ + +GG+d + +++++g+L+++L
  MMETSP1061-20121228|1211_1 125 MPMCGFSAKIVQTLQTEGVDFSSVNVLDYPSIREGVKKFA-SWPTIPQLYINGEFIGGNDIVSEMHESGELKEIL 198
                 578****************************999998888.5*****************************9997 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   4.2e-13   2.9e-10       7      84 .]     126     198 ..     115     198 .. 0.89

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 4.2e-13
   TIGR02180   7 syCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkleell 84 
                 ++C +++k+ ++L+ + v+  +  v++ ++    ++++  k+++   t+P+++ing+fiGG+d +++++++g+l+e+l
  MMETSP1061-20121228|1211_1 126 PMCGFSAKIVQTLQTEGVD--FSSVNVLDY---PSIREGVKKFASWPTIPQLYINGEFIGGNDIVSEMHESGELKEIL 198
                 68************99899..666665555...799**************************************9985 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   5.9e-10   4.1e-07      16      75 ..     126     186 ..     113     189 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 5.9e-10
   TIGR02190  16 pGCPfCakakavLkekGldfeei.vLgkdirtrslravtGattvPqvfinGkliGgsdele 75 
                 p C f ak  ++L+ +G+df  + vL+       ++  +   t+Pq +inG++iGg d + 
  MMETSP1061-20121228|1211_1 126 PMCGFSAKIVQTLQTEGVDFSSVnVLDYPSIREGVKKFASWPTIPQLYINGEFIGGNDIVS 186
                 6799******************966999999999***********************9876 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.9e-09   1.3e-06       4      96 ..     109     203 ..     106     205 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.9e-09
   TIGR02189   4 lvsekavvifskss.....CClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpllkkaga 96 
                  v +++v+++ k       C +s  + + l++ Gv+ + v++ +      i + + +++s +++P +++ G+++Gg + v  +h sg+L+++l  a+a
  MMETSP1061-20121228|1211_1 109 HVNDNPVMLYMKGNpsmpmCGFSAKIVQTLQTEGVDFSSVNVLDY---PSIREGVKKFASWPTIPQLYINGEFIGGNDIVSEMHESGELKEILAVAKA 203
                 566677777665432233377777788889999999877777655...667778888889********************************998877 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       2.2   1.5e+03      19      33 ..      13      27 ..      10      35 .. 0.70
   2 !   16.5   0.0   2.8e-06    0.0019       7      63 ..     125     181 ..     115     186 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 2.2
   TIGR02196 19 yLkskgiafeeidve 33
                y + + i++ + + +
  MMETSP1061-20121228|1211_1 13 YYQYNTIQYTNTNTN 27
                666777888777654 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 2.8e-06
   TIGR02196   7 tpwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivigekivvG 63 
                  p C+   k+ + L+++g++f+ ++v + +  +e + k      +P++ i+++ + G
  MMETSP1061-20121228|1211_1 125 MPMCGFSAKIVQTLQTEGVDFSSVNVLDYPSIREGVKKFASWPTIPQLYINGEFIGG 181
                 6899999****************************9999999*********998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 722.47
//
Query:       MMETSP1061-20121228|1213_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1182.62
//
Query:       MMETSP1061-20121228|1217_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|1218_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-83  278.6   2.1    2.1e-38  130.0   0.0    5.9  5  TIGR03380 agmatine_aguA: agmatine deiminase


Domain annotation for each model (and alignments):
>> TIGR03380  agmatine_aguA: agmatine deiminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.1e-11   8.5e-08       6      98 ..      64     177 ..      60     186 .. 0.64
   2 !   26.2   0.0   1.9e-10   7.8e-07      98     136 ..     221     259 ..     205     267 .. 0.88
   3 !  130.0   0.0   5.2e-42   2.1e-38     141     241 ..     301     402 ..     285     407 .. 0.92
   4 !   30.7   0.0     8e-12   3.3e-08     230     284 ..     410     467 ..     405     476 .. 0.86
   5 !   54.8   0.0   3.8e-19   1.6e-15     277     349 ..     503     584 ..     495     586 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 2.1e-11
   TIGR03380   6 dgfrlPaefekqkevwliWPerpDnWregakpaqkafaevakaiakvepvtvlvskeqye........narkalpe.............eirvvemssnDawirDvGPtfvvnd 98 
                   +r+Pae+e+++++ +++P+ pD +r +         ++a a    e+v++l  ++ ++        + rkal++              irv    snD+w rD+ Ptfvv+ 
  MMETSP1061-20121228|1218_1  64 YTYRMPAEWEPHSACLILFPHNPDTFRVDKAAEEILGLALAIATEGRESVVLLCRDAAHRervaalvrEKRKALHAaeneieiehektmPIRVAVCPSNDTWARDTAPTFVVRT 177
                 579************************875443333333333333345555554433332011011112233333344444445566556999999***************986 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.9e-10
   TIGR03380  98 dkgelrgvdwefnawgglkdGlyfpWdkDdkvarkvlel 136
                 +++el g+dw+fna+gg ++G y p  +D+++ar ++  
  MMETSP1061-20121228|1218_1 221 STRELIGLDWDFNAYGGPEEGTYWPCTQDQAIARTICSE 259
                 568999******************************974 PP

  == domain 3    score: 130.0 bits;  conditional E-value: 5.2e-42
   TIGR03380 141 ryradlvleggsihvDGeGtlltteeclLsegrnpelskeeieeklkeylgvekviWlkeGlylde.tnGhvDnllnfvrPGevvlswtddesdPqyeiske 241
                 + + +l+leggsih+DGeGtll+t+eclL+++rnp+l + ++e+ l+  lg++k++Wl+ Gl++d+ tnGhvDn+++fvrPG+vvl+wtd +++ q e+ +e
  MMETSP1061-20121228|1218_1 301 SLHIPLILEGGSIHTDGEGTLLVTAECLLHQNRNPHLGRLDLEAILQRALGISKILWLPYGLDHDDdTNGHVDNFCCFVRPGHVVLAWTDHKEEQQEEQEQE 402
                 55679*********************************************************98755*************************9998776665 PP

  == domain 4    score: 30.7 bits;  conditional E-value: 8e-12
   TIGR03380 230 desdP..qyeiskealevLenetDakGrklkvhklklpep.lllteeeakgvdavegt 284
                 de+ P  +ye+++ al+ L+++tDa+Gr ++v+kl+lp+p l +t++ea+++ +v+g+
  MMETSP1061-20121228|1218_1 410 DEKRPvtNYERCRIALDYLQSQTDARGRPITVTKLHLPHPgLSYTHAEASSIGNVNGK 467
                 56666447******************************875899*********99995 PP

  == domain 5    score: 54.8 bits;  conditional E-value: 3.8e-19
   TIGR03380 277 gvdavegtlpreagerlaasyvnyliankaiilPlfdde...kDkeakkllqelf...P...drkvvgvkareillgGGnih 349
                 +++++ ++  r++ge +aasyvny++an+a+++P+f+++   +D+ a+++l+ l+   P   +r vvg+++reillgGGni 
  MMETSP1061-20121228|1218_1 503 NLTNSCTARVRQPGEPMAASYVNYYVANGAVLVPQFGNDykeSDERAIETLKALYyggPttnHRTVVGIPSREILLGGGNIX 584
                 4555566789**************************9754448**********996663333689***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 1826.85
//
Query:       MMETSP1061-20121228|1224_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 584.52
//
Query:       MMETSP1061-20121228|1227_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|1232_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 401.71
//
Query:       MMETSP1061-20121228|1230_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 514.06
//
Query:       MMETSP1061-20121228|1233_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1061-20121228|1225_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-47  157.7   2.8    8.5e-47  157.0   1.9    1.3  1  TIGR03653 arch_L6P: archaeal ribosomal protein L6P
    3.3e-14   50.8   1.9    9.9e-14   49.3   1.3    1.7  1  TIGR03654 L6_bact: ribosomal protein L6


Domain annotation for each model (and alignments):
>> TIGR03653  arch_L6P: archaeal ribosomal protein L6P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.0   1.9   4.1e-50   8.5e-47       3     170 .]       9     191 ..       7     191 .. 0.88

  Alignments for each domain:
  == domain 1    score: 157.0 bits;  conditional E-value: 4.1e-50
   TIGR03653   3 eieiPegvsvsieknevkvkgpkgeverelkypkieisved............dkvvletekarkkekalvgtykshiknmikGvtegfeyklkvvYaHFPmqvkvegnkvvienflGekaprtakilkdvkvkvkge...evvvegidkEkvgqtaanieqatkikgkdrrvfqDGiyivek 170
                  +eiPegv+vs++ ++v+v+g+ g++er++k+  +e ++                + ++  +a++k+ a v+t+ sh++nmi Gvt+gf yk++ vY+HFP++v+ +  +v+i nflGe++ r+ k++++v+   +++   ++ ++gid+ +v+ taa+i+qat++++kd r f DGiy+ ek
  MMETSP1061-20121228|1225_1   9 CVEIPEGVEVSVKSRVVTVTGKLGKLERDFKHIPMECRLVTkteeteggevekTYIQVDLWFATRKQLACVRTVCSHVENMIVGVTRGFLYKMRFVYSHFPINVSTNAGNVEIRNFLGERRVRKVKLPEGVEYVRSENvkdQIELSGIDIVAVSLTAAKIQQATNVRNKDLRKFLDGIYVSEK 191
                 69******************************998754321122355555533557788889*******************************************************************9974333323449**************************************886 PP

>> TIGR03654  L6_bact: ribosomal protein L6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   1.3   4.8e-17   9.9e-14       4     150 ..       6     171 ..       3     179 .. 0.78

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 4.8e-17
   TIGR03654   4 gkkpieipagvevkvegekvtvkgpkgelslklkee.vkv............kvednkivvkrkedskeakalhGltralinnmveGvseGfekkLelvGvGYraqlkgk....klelslGyshpveveipegikvevekq..teivvkgidkqkvgqvaaeiral 150
                 +++ +eip+gvev+v++++vtv+g+ g+l++++k+  +++            +ve+  i+v+    ++++ a+  ++ + ++nm++Gv++Gf  k++ v   + ++++ +    +++  lG     +v++peg++   +++   +i ++gid  +v  +aa+i++ 
  MMETSP1061-20121228|1225_1   6 ASRCVEIPEGVEVSVKSRVVTVTGKLGKLERDFKHIpMECrlvtkteeteggEVEKTYIQVDLWFATRKQLACVRTVCSHVENMIVGVTRGFLYKMRFVYSHFPINVSTNagnvEIRNFLGERRVRKVKLPEGVEYVRSENvkDQIELSGIDIVAVSLTAAKIQQA 171
                 6789***************************997643333223333422222334445577777788999999*************************9988887776651111344469999999*********8776542389******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.42
# Mc/sec: 619.09
//
Query:       MMETSP1061-20121228|1229_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0058   14.0   0.0       0.12    9.7   0.0    2.2  2  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN


Domain annotation for each model (and alignments):
>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   2.9e-05      0.12      69     104 ..     130     164 ..     123     188 .. 0.89
   2 !    1.7   0.0    0.0078        32     204     223 ..     316     335 ..     312     355 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 2.9e-05
   TIGR02067  69 eedaeyvWvlDPiDGTksFirGvPvwgtLiaLlekg 104
                 ee+++yv v DP+DG ++  +G+P  gt+i+++e+ 
  MMETSP1061-20121228|1229_1 130 EEGEKYVAVFDPLDGSSNVDAGIPT-GTIIGIYEHS 164
                 67789*******************7.9****98865 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.0078
   TIGR02067 204 pyDiaalipiieeAggvitd 223
                 +y  a++  i+e+Aggv ++
  MMETSP1061-20121228|1229_1 316 LYEGAPMSFIMEQAGGVSST 335
                 58899***********9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.21
# Mc/sec: 2338.09
//
Query:       MMETSP1061-20121228|1239_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|1241_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2465.37
//
Query:       MMETSP1061-20121228|1237_1  [L=1289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.19s 00:00:00.71 Elapsed: 00:00:00.50
# Mc/sec: 3402.68
//
Query:       MMETSP1061-20121228|1238_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1726.01
//
Query:       MMETSP1061-20121228|1245_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 1660.61
//
Query:       MMETSP1061-20121228|1250_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.12s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 347.34
//
Query:       MMETSP1061-20121228|1252_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       458  (0.111653); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1061-20121228|1254_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 499.26
//
Query:       MMETSP1061-20121228|1264_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|1262_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.60
# Mc/sec: 1660.86
//
Query:       MMETSP1061-20121228|1260_1  [L=784]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   10.8  69.6      0.065    8.7   8.4    2.2  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.02   10.4  64.1      0.049    9.1   7.0    2.3  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  35.6   6.6e-05      0.14     255     496 ..     250     493 ..     222     494 .. 0.66
   2 ?    8.7   8.4   3.2e-05     0.065     808     947 ..     484     626 ..     468     636 .. 0.45

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 6.6e-05
   TIGR02168 255 leeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlek.eleeleeqleeleskke.eleeelaeleeeleelkeelesleaeleea....eaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesl 496
                  ++ ++e++++++e   lr+ + +l+e+le +++elq+ ++e++r  +++e+ + r+++ ++ ++++ ++++e l+s+ e  l+e+ ++ ee+le+ +++l ++e++ +++     +e+ ++ +r++e+++ +++l++e a   +q+++l+ ++  l ++le+l+e  +++ ++ +++e++l+    +l++++++++++++ + ele + ++l++al   + +++    a ++a  + ++lqar+ +l
  MMETSP1061-20121228|1260_1 250 PNRSKREVAQAQKEARILRRHVVSLNEQLEIAESELQAQRKELERAAERMEKDRVRQKEEKAlSQKQSSQEIEVLKSQHErSLKEQQTRFEEQLERYRKKLSEEEKRRKQQggdwDKEMSNAIDREQEMRKTINALEDEKAIFLSQISTLQGQQAVLGSRLESLTEAADNAMERERDAENRLD---VALNQHARQISQRQARESELERTVQELNAALVV-SSQVKIDCDAPRSAGTNNSHLQARISAL 493
                 456667777777777777777777777777777777777777777666655554444333221333444444444433331445555566666666666665555555543222256778888888888888888999999999999999999999999999999998888888888877776...888888888888888888888888888888765.4666666777777777777777777776 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 3.2e-05
   TIGR02168 808 seleaeltelkeeaaekeerleslekeiaalekeleeleeqieel....eeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerl 947
                 s l+a++++l+++++ ++++l++ +++ + l+ +l+  ++++ ++     ++  ++ ++i++++ ++++le+++  +++  ++++++  +  ++ e++ ++++ l+++v +l++++ + +++  +l++rl+ +  + ++++e+l
  MMETSP1061-20121228|1260_1 484 SHLQARISALEIDLQAANSQLAMEREQSDTLQSQLRSFTSETTQEasmvHAKELQYDRKIADMSLTIAKLEAKVRVFENLPQKTSNQSTTSLSD-EDMPSRIKVLSEEVVRLRDKVANYNSESLALKNRLKVAVDRSNKFEEEL 626
                 3344444444444444444444444444444444433322222220000233333444555555555555555555555544444443333333.4555555555555555555555555555555555555444444444444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1  32.8   9.3e-05      0.19     721     971 ..     252     493 ..     224     494 .. 0.68
   2 ?    9.1   7.0   2.4e-05     0.049     368     517 ..     484     628 ..     476     712 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 9.3e-05
   TIGR02169 721 eiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeie.eelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev.keeeeepeeelslekvkkelekveeeleaL 971
                 + ++e+ q+++e++ l++++  l+e+l+  e el+++++el++ ++++e+ +      +++ ++l +++s+++ie ++ ++ ++l+e+  r e++le   ++l+++e   +  +++  +  +e+ ++ ++++e++k+i++l+ +++ + +++  l+ + + L ++l+ L +  +++ +     +++++ l+++++++ +++++++a+ ++le  ++el++++  + + + ++++  +    +  +++++++aL
  MMETSP1061-20121228|1260_1 252 RSKREVAQAQKEARILRRHVVSLNEQLEIAESELQAQRKELERAAERMEKDRV----RQKEEKALSQKQSSQEIEVLKsQHERSLKEQQTRFEEQLERYRKKLSEEE---KRRKQQGGDWDKEMSNAIDREQEMRKTINALEDEKAIFLSQISTLQGQQAVLGSRLESLTEAADNAMERE---RDAENRLDVALNQHARQISQRQARESELERTVQELNAALvVSSQVKIDCDAP-RSAGTNNSHLQARISAL 493
                 33444555555555555555555555555555555555555555555444332....24455567777777777766514556788888889988888888888877...44455666777888899999***************************************98887766555...5556678889999999*******************99874333333333322.23344555566666666 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 2.4e-05
   TIGR02169 368 eelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevl 517
                 ++l+a++ +++ + +++  +l+ ++e+ + l+++l +     +  ++e+  ++++  +   +++++   ia+le+++    e++ +++ + ++++   e++ ++++ l+ee+ +l +++ + ++e  +l+ + k++ ++s ++++ e ++
  MMETSP1061-20121228|1260_1 484 SHLQARISALEIDLQAANSQLAMEREQSDTLQSQLRSFT---SETTQEASMVHAKELQYDRKIADMSLTIAKLEAKVRV-FENLPQKTSNQSTTSLSDEDMPSRIKVLSEEVVRLRDKVANYNSESLALKNRLKVAVDRS-NKFEEELMI 628
                 445555555555555555555555555555555555555...2233345555555555555555555555555555443.344555555555555555555555555555555555555555555555555555555555.333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       509  (0.124086); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.78u 0.17s 00:00:00.95 Elapsed: 00:00:00.81
# Mc/sec: 1277.52
//
Query:       MMETSP1061-20121228|1266_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 367.27
//
Query:       MMETSP1061-20121228|1261_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       233  (0.0568016); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 1731.95
//
Query:       MMETSP1061-20121228|1265_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.17s 00:00:00.87 Elapsed: 00:00:00.59
# Mc/sec: 964.19
//
Query:       MMETSP1061-20121228|1267_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-65  217.7  13.6    2.5e-42  143.1   7.6    2.1  2  TIGR00297 TIGR00297: TIGR00297 family protein


Domain annotation for each model (and alignments):
>> TIGR00297  TIGR00297: TIGR00297 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.0   0.2   9.2e-26   3.8e-22      16     118 ..     138     240 ..     122     249 .. 0.78
   2 !  143.1   7.6     6e-46   2.5e-42      90     233 ..     237     383 ..     227     387 .. 0.91

  Alignments for each domain:
  == domain 1    score: 77.0 bits;  conditional E-value: 9.2e-26
   TIGR00297  16 llaayakvldeeGllsaiilGlilllaagfrflllillffvlGslvtkvklekkkekgiaekasgaRslknvlgnglvpllfavliaFGvegdlilalgyvas 118
                 l  +  k+l++eG+++a  lG+ l+ ++g+r++   +l+++lGs+vt+vk ++k+++giae ++g+R+++nv+g++ + l++a+ +    ++ ++ +l+  ++
  MMETSP1061-20121228|1267_1 138 LRPKLLKLLTPEGFVHALALGTGLWTTLGWRGWTTCVLYLFLGSAVTRVKFREKQARGIAEGRGGKRGPENVWGSAATGLVCAICASVAASSTTTATLTTATT 240
                 22355679***************************************************************************98888776433332222222 PP

  == domain 2    score: 143.1 bits;  conditional E-value: 6e-46
   TIGR00297  90 nglvpllfavliaFGvegdlilalgyvasvaaalaDtlaseiGkleekkprLittlkrvekGtdGaisvkGtlagllgalviallgyll.GlislkvllvatlaaivgvlldsllGavlerkk...yLtneavnllatlvgaiigvll 233
                  + +++  a     G+ ++l+l lgyvas+a++l+Dt+aseiGk+++k ++Litt++r e+Gt+Ga+s +Gtla+l+g+ +++l+g+++ Glis  ++ +++ aa+v+++++s+lGa+l+ k    ++tne+vn+l+tl+ga i++  
  MMETSP1061-20121228|1267_1 237 TATTTAATATNTFLGIPSELYL-LGYVASLATKLSDTFASEIGKAYGKTTFLITTFERAEPGTEGAVSAEGTLASLVGGTLLTLYGWGVvGLISARAIPISIGAAFVATNIESVLGATLQGKPnlgWMTNEVVNFLNTLIGATIAIAC 383
                 5556666777778899779999.****************************************************************8538*****************************884445*******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1551.87
//
Query:       MMETSP1061-20121228|1268_1  [L=948]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (948 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.20s 00:00:00.70 Elapsed: 00:00:00.46
# Mc/sec: 2720.12
//
Query:       MMETSP1061-20121228|1269_1  [L=812]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 2551.79
//
Query:       MMETSP1061-20121228|1271_1  [L=785]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   11.9   0.2      0.026   11.2   0.1    1.2  1  TIGR00316 cdhC: CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00316  cdhC: CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   6.3e-06     0.026     355     433 ..     376     457 ..     373     468 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.3e-06
   TIGR00316 355 elkerv.kdaipedlrdkiateedaktldel..rkflkekehpvvkrvaeevveeeeeeaeevkeeeeeeaeGievpalqlk 433
                 el e+  + +i +dl+dk++    + t+  +  +   + k h  ++ + +  +eeeee+ e+ +eee++e++G+ v   q+ 
  MMETSP1061-20121228|1271_1 376 ELTESFsNSYIFNDLKDKVSNYATTFTVTGIspITVGRRKRHLRLRWADRRLQEEEEEDGEDGEEEENKEPNGLIVEYTQTI 457
                 7777762469********9887777777766225678999*********************************999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (785 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 2800.31
//
Query:       MMETSP1061-20121228|1270_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 1017.42
//
Query:       MMETSP1061-20121228|1272_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.27
# Mc/sec: 2634.89
//
Query:       MMETSP1061-20121228|1275_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    6.4   9.7         25    2.8   6.7    2.0  1  TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
          2    6.5  12.3    4.3e+02   -1.0   8.5    2.7  1  TIGR00807 malonate_madL: malonate transporter, MadL subunit


Domain annotation for each model (and alignments):
>> TIGR03750  conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   6.7     0.012        25      27      49 ..      23      45 ..       1      68 [] 0.44

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.012
   TIGR03750 27 avvglvlglvlglllalllgswa 49
                + +g+ lg++lg+ l + lg+++
  MMETSP1061-20121228|1275_1 23 ISLGVKLGIMLGISLGVELGTML 45
                22222223333333333333222 PP

>> TIGR00807  malonate_madL: malonate transporter, MadL subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   8.5      0.21   4.3e+02      15      33 ..      13      31 ..       1      67 [. 0.67

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.21
   TIGR00807 15 vGvvvGdllGvalGvkanv 33
                +G ++G +lG+ lGvk  +
  MMETSP1061-20121228|1275_1 13 LGTMLGAMLGISLGVKLGI 31
                4566666666666666433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 498.63
//
Query:       MMETSP1061-20121228|1273_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-09   33.2   0.0    1.1e-08   32.5   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    8.9e-06   23.1   0.0    1.6e-05   22.3   0.0    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00013   19.6   0.1    0.00031   18.5   0.0    1.5  2  TIGR02072 BioC: biotin biosynthesis protein BioC
     0.0017   15.7   0.0     0.0034   14.7   0.0    1.5  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0034   14.8   0.0     0.0054   14.1   0.0    1.3  1  TIGR02081 metW: methionine biosynthesis protein MetW
  ------ inclusion threshold ------
      0.025   11.8   0.0      0.059   10.6   0.0    1.5  2  TIGR00406 prmA: ribosomal protein L11 methyltransferase
      0.065    9.4   1.6       0.08    9.1   1.1    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.9e-11   1.1e-08      38     140 ..     248     353 ..     230     368 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.9e-11
   TIGR01983  38 kkklkknekkleglkvlDvGcGgGllseslarlgae...vtgiDlseelievAklhakkdplkkieyelks.veelaeeekesfDvvlamEvlEHvadleeilkeca 140
                 +++ ++n+++ ++  vlDvGcG G+l   l + g++   ++g+Dlsee+i +A+++      k  ++++++   + ++++++++  v+    l   +d+++ l ++ 
  MMETSP1061-20121228|1273_1 248 NNNNNNNNNNNNDSLVLDVGCGYGVLVPFLKKAGFKanqIHGVDLSEEMIGHAQTFYPDVASK-GSFRATDfFADTEKDQRQKYRSVIFCSSLHDLPDPKRALLKAR 353
                 344455567788999******************998888****************99888775.8888887357888888999999999888999999888776654 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.8e-08   1.6e-05      56     116 ..     261     322 ..     229     367 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.8e-08
   TIGR02021  56 kkvlDAGCGtGllsielAkrGa...ivkavDiseklvelarkraekedeaenveFevndlesle 116
                 + vlD GCG G+l   l k G    ++++vD+se+++  a++ +++  +  +  F   d+ +++
  MMETSP1061-20121228|1273_1 261 SLVLDVGCGYGVLVPFLKKAGFkanQIHGVDLSEEMIGHAQTFYPDVAS--KGSFRATDFFADT 322
                 669****************996333689*************99998775..4445555444433 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   1.2e+03     161     174 ..     175     187 ..     148     209 .. 0.46
   2 !   18.5   0.0   5.2e-07   0.00031      32      80 ..     257     314 ..     250     357 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2
   TIGR02072 161 eelkallkke.fell 174
                 eel++++++     +
  MMETSP1061-20121228|1273_1 175 EELETAIQNRrA--F 187
                 445555554321..2 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 5.2e-07
   TIGR02072  32 kfepakvLdiGcGtGiltrallkr.fpqaelialDiseemleqakkkls........n 80 
                 + +++ vLd+GcG G+l   l+k  f+++++  +D+seem+ +a++ ++        +
  MMETSP1061-20121228|1273_1 257 NNNDSLVLDVGCGYGVLVPFLKKAgFKANQIHGVDLSEEMIGHAQTFYPdvaskgsfR 314
                 556789***********9999886367778***************9988666644442 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   5.8e-06    0.0034      85     154 ..     256     327 ..     239     336 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 5.8e-06
   TIGR03534  85 kkkeklkvlDlgtGsGaIalalake.lpdakviavDiseeAlkvarkNakrlglkeveflksdlleal..eek 154
                 ++++   vlD+g+G G++   l+k  ++  ++++vD+see +  a+        k  +f   d+++++  +++
  MMETSP1061-20121228|1273_1 256 NNNNDSLVLDVGCGYGVLVPFLKKAgFKANQIHGVDLSEEMIGHAQTFYPDVASK-GSFRATDFFADTekDQR 327
                 4455689***************998579999***************999998888.99999999999854333 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   9.2e-06    0.0054      13      51 ..     259     299 ..     250     349 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 9.2e-06
   TIGR02081  13 agsrvLDlGcGdGeLLallrde..kqvegaGleideenvla 51 
                 + s vLD+GcG G L+  l++   k  + +G++++ee++  
  MMETSP1061-20121228|1273_1 259 NDSLVLDVGCGYGVLVPFLKKAgfKANQIHGVDLSEEMIGH 299
                 6899***************7753355556899999998865 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       2.5   1.4e+03     221     240 ..     126     145 ..     111     151 .. 0.80
   2 ?   10.6   0.0    0.0001     0.059     158     195 ..     258     297 ..     251     305 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.5
   TIGR00406 221 kiegkaDvivaNilAevike 240
                   e+++  +v N lAe++++
  MMETSP1061-20121228|1273_1 126 GTEKRISFLVENALAEPLRR 145
                 56778888899999999876 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.0001
   TIGR00406 158 lkdkkviDvGcGSGiLsiaalklg..aakvvavDiDplav 195
                 ++d  v+DvGcG G+L   ++k g  a+++++vD+    +
  MMETSP1061-20121228|1273_1 258 NNDSLVLDVGCGYGVLVPFLKKAGfkANQIHGVDLSEEMI 297
                 567889**********999999874477899999876655 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   1.1   0.00014      0.08     297     421 ..     122     261 ..      39     288 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00014
   TIGR00934 297 s..............rriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidra..easdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevs 421
                 +              + + e ++r+l  ++i ++ ++ +  +  +++ +   + +le +  ++ra  e+++++el+ +   q  ++k + +a+ + k +++   n+ +  k r++k s+  +e++gn++++ ++n++++ s
  MMETSP1061-20121228|1273_1 122 AiaagtekrisflveNALAEPLRRALELREIVQVFERRIAGMGPEEIRQRYSPEELETAIQNRRAfeEHMETNELTAED-LQVAMQKVTWDASADAKACRSVTGNMPTTIKNRVTKASEMAYEATGNNNNNNNNNNNNNDS 261
                 2333333333333332333333344444444443355555555566666555566666666666511445555555554.66666777777788899999**************************988888877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1461.78
//
Query:       MMETSP1061-20121228|1277_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 533.70
//
Query:       MMETSP1061-20121228|1274_1  [L=886]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (886 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.50
# Mc/sec: 2338.85
//
Query:       MMETSP1061-20121228|1279_1  [L=844]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.40
# Mc/sec: 2784.97
//
Query:       MMETSP1061-20121228|1283_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|1284_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 301.69
//
Query:       MMETSP1061-20121228|1281_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0001   19.1   0.0    0.00016   18.5   0.0    1.2  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
  ------ inclusion threshold ------
       0.02   12.2   3.5        1.4    6.2   0.4    3.1  2  TIGR02830 spore_III_AG: stage III sporulation protein AG
      0.027   11.7   0.0      0.064   10.5   0.0    1.6  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific


Domain annotation for each model (and alignments):
>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.2e-07   0.00016     296     343 ..     596     645 ..     554     666 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.2e-07
   TIGR00479 296 kvvDaycGvGtftlplAkqaksvvgvevvkes..vekakrnAelngianv 343
                  v D++cGvG + + lAk++k+    + +++    +k k+ A +ng +n 
  MMETSP1061-20121228|1281_1 596 VVADVFCGVGAVCMLLAKKVKDRHKAQRNQKQnqKQKQKQSASQNGSKNQ 645
                 356******************99988877655115667789999999996 PP

>> TIGR02830  spore_III_AG: stage III sporulation protein AG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.4     0.001       1.4      11      55 ..     463     507 ..     461     516 .. 0.78
   2 ?    5.1   0.1    0.0022       2.9      13      53 ..     605     647 ..     594     662 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.001
   TIGR02830  11 liglllllvsslfssseeeeeseeeekekeekeevksekqkedei 55 
                 lig +ll++s +fss  +++++++++k+++++++ +s+k+ +  +
  MMETSP1061-20121228|1281_1 463 LIGEALLASSTTFSSGGKSSNNNNNNKNSNSNSNSNSNKSIQTVV 507
                 79999***********99987777777777777777777766554 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0022
   TIGR02830  13 glllllvsslfssseeee..eseeeekekeekeevksekqked 53 
                 g + +l+++ ++ +++++  +++++++++++ ++++++k++++
  MMETSP1061-20121228|1281_1 605 GAVCMLLAKKVKDRHKAQrnQKQNQKQKQKQSASQNGSKNQSS 647
                 4455555555555555542334444444444444555554444 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.7e-05     0.064      76     139 ..     580     683 ..     575     732 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.7e-05
   TIGR03534  76 Lveaaleel.kkkeklkvlDlgtGsGaIalalakel.......................................pdakviavDiseeAlkvarkNakrlglke 139
                 L+  +l+   +++++l v+D+ +G Ga+ + lak++                                       p +kv+a D +++A+++ ++ ++++g+++
  MMETSP1061-20121228|1281_1 580 LLGDILRSKpSQNRPLVVADVFCGVGAVCMLLAKKVkdrhkaqrnqkqnqkqkqkqsasqngsknqssggtspeqPLLKVLANDWNPRAIEYMKQSIAANGMDK 683
                 55555555534555899*******************999*********************************9999999**********999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.13s 00:00:00.57 Elapsed: 00:00:00.38
# Mc/sec: 3188.58
//
Query:       MMETSP1061-20121228|1278_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2365.65
//
Query:       MMETSP1061-20121228|1287_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.058   11.3   1.1      0.081   10.8   0.8    1.2  1  TIGR01495 ETRAMP: early transcribed membrane protein (ETRAMP) family


Domain annotation for each model (and alignments):
>> TIGR01495  ETRAMP: early transcribed membrane protein (ETRAMP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.8     2e-05     0.081       6      25 ..      41      60 ..      38      66 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2e-05
   TIGR01495  6 ilyllaillainliapglcn 25
                +l+l++i+++in+i+ +++ 
  MMETSP1061-20121228|1287_1 41 LLLLINIIIIINIIINNIID 60
                7899***********99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 520.62
//
Query:       MMETSP1061-20121228|1285_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 2481.40
//
Query:       MMETSP1061-20121228|1288_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 494.96
//
Query:       MMETSP1061-20121228|1286_1  [L=1680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.17s 00:00:00.91 Elapsed: 00:00:00.67
# Mc/sec: 3309.58
//
Query:       MMETSP1061-20121228|1282_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1708.09
//
Query:       MMETSP1061-20121228|1289_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1203.13
//
Query:       MMETSP1061-20121228|1292_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-12   44.7   0.0    4.6e-12   43.7   0.0    1.4  1  TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
    2.2e-06   25.5   0.3    4.1e-06   24.7   0.0    1.6  2  TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
     0.0073   14.0   0.0      0.014   13.1   0.0    1.4  1  TIGR00185 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2


Domain annotation for each model (and alignments):
>> TIGR00186  rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   3.4e-15   4.6e-12      94     236 ..      23     187 ..       4     189 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 3.4e-15
   TIGR00186  94 llliLdeitDphNlGailRtAealgvdgv.vlkkrrsapltstvvktssGalel..lplvrvtnlsetltklkesgfwivgtsleaeetkyekkktk..................klaLvvGnEgkGvrklikkksDflikipmagk.vdSLNvSVAtgillfei 236
                 + l++++i+   N+ a+l +  a+g   v v+  ++  +         + ale+  + l r ++  e +  ++e+g+  vg +++++++  + + ++                   + +++GnEg+G++    k++  li+ip  g  + S+Nv VAt i+l+  
  MMETSP1061-20121228|1292_1  23 VNLVVCNIQKIANVKAMLLASVAFGCTEVlVVGMEKNLKRRDAFPPPFCKALEQdrIALRRFAKWKECVAYMQERGMVLVGVEIDETSQLLNDDYFArnfphdndndntnnntnyNIGILMGNEGQGIQPAHLKNCHGLIRIPQHGAgTASMNVNVATNIVLYRF 187
                 56888888888888888888888887554266777777777777777788887623666799999***********************976666666778899999**************************************998799*************86 PP

>> TIGR00050  rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.52   7.1e+02       5      38 ..      23      56 ..      21      63 .. 0.77
   2 !   24.7   0.0     3e-09   4.1e-06     101     153 ..     134     187 ..     115     190 .] 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.52
   TIGR00050  5 isivlvepktsgNvGsiARamknmGleeLilvnp 38
                +++v+ + ++  Nv ++  a   +G +e ++v  
  MMETSP1061-20121228|1292_1 23 VNLVVCNIQKIANVKAMLLASVAFGCTEVLVVGM 56
                5677888888888888888888889888888765 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 3e-09
   TIGR00050 101 akkgkvalvFGREdsGLtNEElekcdvlvsipts.eeYpslNlsqAvavilYel 153
                 +++ +++++ G E++G++   l+ c+ l++ip + +  +s+N+  A  ++lY  
  MMETSP1061-20121228|1292_1 134 NTNYNIGILMGNEGQGIQPAHLKNCHGLIRIPQHgAGTASMNVNVATNIVLYRF 187
                 445599**************************9934679*************86 PP

>> TIGR00185  rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   9.9e-06     0.014      91     146 ..     131     189 ..     118     190 .] 0.78

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.9e-06
   TIGR00185  91 kykdtdy...lvfGqetkGlPkslldelaeqklriPlte.evrslnlsnavavvlyealr 146
                 ++++t+y   +++G+e +G+    l++  +  +riP     + s+n+  a  +vly  ++
  MMETSP1061-20121228|1292_1 131 TNNNTNYnigILMGNEGQGIQPAHLKNC-HGLIRIPQHGaGTASMNVNVATNIVLYRFQK 189
                 455555533378********77777776.79*****9875899*************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1044.91
//
Query:       MMETSP1061-20121228|1290_1  [L=781]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-231  767.9   5.2   2.6e-231  767.6   3.6    1.1  1  TIGR01092 P5CS: delta l-pyrroline-5-carboxylate synthetase
   8.5e-125  414.5   0.8   1.2e-124  414.0   0.6    1.2  1  TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase
    1.5e-56  189.9   1.5      4e-44  149.1   0.0    2.3  2  TIGR01027 proB: glutamate 5-kinase
      4e-10   37.4   0.0    9.7e-10   36.2   0.0    1.6  1  TIGR00761 argB: acetylglutamate kinase
      1e-07   29.0   4.4    2.9e-07   27.5   1.8    2.0  2  TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
    7.3e-07   26.3   0.1    5.8e-06   23.4   0.0    2.2  2  TIGR00746 arcC: carbamate kinase
    4.4e-06   24.3   0.0    1.1e-05   23.0   0.0    1.6  1  TIGR02076 pyrH_arch: putative uridylate kinase
    0.00042   17.8   0.1      0.062   10.7   0.0    2.5  2  TIGR02075 pyrH_bact: UMP kinase
  ------ inclusion threshold ------
      0.014   13.2   0.1      0.029   12.2   0.1    1.5  1  TIGR00681 kdpC: K+-transporting ATPase, C subunit
      0.039   11.0   0.2      0.084    9.9   0.1    1.5  1  TIGR01011 rpsB_bact: ribosomal protein S2


Domain annotation for each model (and alignments):
>> TIGR01092  P5CS: delta l-pyrroline-5-carboxylate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  767.6   3.6  6.2e-234  2.6e-231       1     708 [.      12     780 ..      12     781 .] 0.93

  Alignments for each domain:
  == domain 1    score: 767.6 bits;  conditional E-value: 6.2e-234
   TIGR01092   1 rafvkdvkrivvkvGtavvtrkderlalGrlasiveqlselnsdGfevilvtsGavalGrqrlryrklvnssvadllksq.....................................veldakacaavGqsglmalyetlfsqldvtaaqllvtdsdfrdedfrkqlsetvkellrlkvvpvlnendavstrkapyedssGivkdndslaallalelkadllillsdveGlydgppsdddsklidifvkekhqdeitfGeksrlGrGGmeakvkaavyaaygG...vsviiasGkaaenitkvveGk....kvGtlfsedahlwat..vee............tgerdmavaaressrklqalsseerkeilhdladaleaneeeilaenekdvaaaeeagyeeslvarlalkpsklsslaislrqlaesedsiGrvlkrtriaddlilekvsvpiGvllivfesrpdalvqiaslairsGnGlllkGGkeakrsnailhkvitealse....kvgkkliglvtsreeiedllklddvidlviprGsnklvsdikkstkipvlGhadGichvyvdksakldkakrlvrdakldypaacnaletllvhkdllrngllddlivvlrvegvklyaGprlaallklnisevkslrreysskaltveivddvydaidhihkyGsahtdvivte.deevaeiflqkvdsaavlhnastrfsdGfrfGlGaevGistsriharGpvGveGllttrwllrGkdq..vvsgdkG.lvylhkdl 708
                 r+ ++d++r+ vkvGt+vv+++++r +l rl++i+eq++el++ G evi+v+sGav++G++ lr +  +  s++d  + q                                      ++   acaa+Gq  lm ly +lf+q+dv+a+q+l+t+ df d+   ++l+ tv++ll   +vp++nendavs++     d   ++ dndslaal a  + a++l+ll+dv+G+yd  ps++ +k+++++++e     +++Geks  GrGGm +k+ aa+ a+  G   ++ ++a+G+  ++i  ++  +    + Gtlf + + +  +  + +               rd avaar+ +rklqal    r++il+ +adal +++e++ a+n  d++aae  g +  l +rl l   kl++la +lrq+a+  d++G v  + ++ad+++l  ++vpiGvl+i+fesrpd+++qia+l+i+sGnGlllkGGkea +sn+ +h v+ +a+       + +++i l+tsr ++ d+l ld+vidlviprGsn lvs ik  tkipvlGhadG+chvy+d+sa  d a ++v d+k+dyp+acna+etllvhk    ng+  + ++ lr+ gvk  +Gp+ a  l l  ++++ l+ ey+++ + ve+v+++ +aid ih +Gs ht+ iv+  d ev e fl++vd+a+v+ nastrf+dG+rfGlGaevGist rih+rGpvGveGlltt+w lr  d   v +   G  +++hk+l
  MMETSP1061-20121228|1290_1  12 RSILRDARRVCVKVGTSVVANENGRPSLTRLGAITEQIAELHARGIEVIFVSSGAVGMGKRLLRKQSRMLMSFRDSINVQdgiadsplndrnspmarnqsfvslldipakkhtpaekKKFYDSACAAAGQFDLMNLYSSLFDQYDVSASQILLTQGDFIDKRRLENLKYTVERLLSHGIVPIINENDAVSANLGYTAD--DVFSDNDSLAALCARSFNAEVLVLLTDVKGVYDRAPSEPGAKMLELYLEETSD--VSIGEKSSQGRGGMASKIDAALSAVAPGsdcTACVVAAGNDLNTIRAILGPEnrfgTKGTLFCKPNSALEKqaISDyqssagssddisDEARDKAVAARNEARKLQALPHSVRQDILMAMADALIEKKEKLIAANTIDLEAAERDGTALVLKKRLKLTDAKLETLAEGLRQIANLPDPLGVVKSKRELADGMELSLITVPIGVLMIIFESRPDSMPQIAALSIASGNGLLLKGGKEAVNSNSAIHEVLGDAIESgskgAIKRDIIALITSRGQVADMLALDEVIDLVIPRGSNALVSYIKANTKIPVLGHADGVCHVYLDESAPADAASKIVVDSKTDYPSACNAMETLLVHKATISNGVAPQTLMALRAAGVKCLGGPQ-AMKLGLCDTAAEQLKCEYGDLTCMVEVVENMDEAIDWIHAHGSGHTESIVCSpDAEVGEEFLRRVDAACVFKNASTRFADGYRFGLGAEVGISTGRIHSRGPVGVEGLLTTKWQLRSADVnlVAEYSSGeKKFTHKEL 780
                 8999**************************************************************************999********************************9999888899*******************************************************************98876665..69**********************************************99876..99**********************9987444689**************965421224689**8855432211122111111111111134699***************************************************************************************************************************************************************762211234679********************************************************************************************************************.8889999999*************************************9996449**************************************************************9985214445566689999997 PP

>> TIGR00407  proA: glutamate-5-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  414.0   0.6  2.9e-127  1.2e-124       1     398 []     360     754 ..     360     754 .. 0.96

  Alignments for each domain:
  == domain 1    score: 414.0 bits;  conditional E-value: 2.9e-127
   TIGR00407   1 akeaalklaqlstaeknealskiadeLkaeaelilaanakdiaaakenGladalldrLlLteeklksiaddvkdvieLadPvGkvieareldeGLklervrvPlGvlgviyearPevivdvasLclktGnaviLkGgkeavrsnkalveviqdaleq...tglpveavqliedpdreevkellkldeyvdlliPrGgnelvklikeestiPvlehadGvChiyldesadlakakkvivdaktqrPstCnaietLLvnka.iaeefleeLekqleekgvelradalvlkllelekateaevskedfdkeflsldLsvkivedleeaiehirqygtkhsdailte.dkknaekfvkevdsaavyvnastrfadGfrfGfGaevgistqklharGPvGLeaLvsyk 398
                 a++ a kl+ l    ++++l ++ad+L ++ e ++aan +d++aa+  G a  l +rL+Lt++kl+++a++++++++L+dP+G v+++rel +G+ l  ++vP+Gvl +i+e+rP+ + ++a+L++ +Gn  +LkGgkeav+sn a+ ev+ da+e+    ++    + li+   r +v ++l lde +dl+iPrG+n+lv++ik +++iPvl+hadGvCh+yldesa    a k++vd+kt++Ps+Cna+etLLv+ka i++   ++   +l ++gv+  +  +++kl  +++a e      +++ e+++l   v +ve+++eai+ i+ +g+ h+++i+ + d +  e+f+++vd+a v+ nastrfadG+rfG+Gaevgist ++h+rGPvG+e+L ++k
  MMETSP1061-20121228|1290_1 360 ARNEARKLQALPHSVRQDILMAMADALIEKKEKLIAANTIDLEAAERDGTALVLKKRLKLTDAKLETLAEGLRQIANLPDPLGVVKSKRELADGMELSLITVPIGVLMIIFESRPDSMPQIAALSIASGNGLLLKGGKEAVNSNSAIHEVLGDAIESgskGAIKRDIIALITS--RGQVADMLALDEVIDLVIPRGSNALVSYIKANTKIPVLGHADGVCHVYLDESAPADAASKIVVDSKTDYPSACNAMETLLVHKAtISNGVAPQTLMALRAAGVKCLGGPQAMKLGLCDTAAE------QLKCEYGDLTCMVEVVENMDEAIDWIHAHGSGHTESIVCSpDAEVGEEFLRRVDAACVFKNASTRFADGYRFGLGAEVGISTGRIHSRGPVGVEGLLTTK 754
                 788999*****************************************************************************************************************************************************987667888899999988..**********************************************************************************974899999****************999999988885554......4566*********************************987366789**************************************************9987 PP

>> TIGR01027  proB: glutamate 5-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.2   1.7e-13   6.9e-11       1      61 [.      19      79 ..      19      83 .. 0.94
   2 !  149.1   0.0   9.6e-47     4e-44      69     273 ..     134     344 ..     113     377 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.7e-13
   TIGR01027  1 kriVvKlGsssLteesgklkrsklaelveqvaklkkaGhevvivsSGavaaGleaLglper 61
                +r+ vK+G+s++++e+g++++++l +++eq+a+l++ G ev+ vsSGav +G + L  ++r
  MMETSP1061-20121228|1290_1 19 RRVCVKVGTSVVANENGRPSLTRLGAITEQIAELHARGIEVIFVSSGAVGMGKRLLRKQSR 79
                5899************************************************998877665 PP

  == domain 2    score: 149.1 bits;  conditional E-value: 9.6e-47
   TIGR01027  69 QalaaVGQgrLmklyeklfsqyglkvaQiLLtradlskrerylNarntleellelgvvpivNENDtva.....veeikfGDNDtLsalvaalveAdlLvlltdvdgLydadprtnpdAklieeveeieeelkavagssgssvGTGGmrtKleaaelAsrag...veviiasgekpekiadlle....daavgtlfeakkkklknrkqwilaaseakG 273
                  a aa GQ  Lm+ly++lf+qy+ + +QiLLt+ d+ +++r +N + t+e+ll+ g+vpi+NEND+v+     +++  f DND L+al a   +A++Lvlltdv+g+yd+ p ++p Ak++e   e ++++   +    ss G GGm++K+ aa  A + g      ++a+g++ ++i ++l       ++gtlf + ++ l+++   i  +++++G
  MMETSP1061-20121228|1290_1 134 SACAAAGQFDLMNLYSSLFDQYDVSASQILLTQGDFIDKRRLENLKYTVERLLSHGIVPIINENDAVSanlgyTADDVFSDNDSLAALCARSFNAEVLVLLTDVKGVYDRAP-SEPGAKMLELYLEETSDVSIGEK---SSQGRGGMASKIDAALSAVAPGsdcTACVVAAGNDLNTIRAILGpenrFGTKGTLFCKPNSALEKQ--AISDYQSSAG 344
                 589****************************************************************94444456789**********************************.9*******987666555554443...457************999988822234678888998999999873333335799999999988766..4555555545 PP

>> TIGR00761  argB: acetylglutamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   2.4e-12   9.7e-10     127     225 ..     181     290 ..     166     295 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2.4e-12
   TIGR00761 127 lleallkagiipvia...slald..eegqllNvnaDtaAaelAaaleAekLvlLtdvaGileg...dkksliseleleeieql...ikqavikgGmipKveaalealesg 225
                  +e ll +gi+p+i+   +++++  ++ + +  + D +Aa  A++++Ae LvlLtdv+G++++   +   ++ el lee  ++   +k++  +gGm  K++aal+a++ g
  MMETSP1061-20121228|1290_1 181 TVERLLSHGIVPIINendAVSANlgYTADDVFSDNDSLAALCARSFNAEVLVLLTDVKGVYDRapsEPGAKMLELYLEETSDVsigEKSSQGRGGMASKIDAALSAVAPG 290
                 6899**********844435555234444455699****************************9887788999**9999988732235666799************9876 PP

>> TIGR02518  EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   1.8   7.2e-10   2.9e-07       9     259 ..     352     617 ..     347     647 .. 0.79
   2 ?    0.8   0.0     0.092        38     352     397 ..     670     716 ..     663     746 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 7.2e-10
   TIGR02518   9 evrnlirsakvaqkklaalsqeqidkivkaivdaaeenavklak......maneetGfGkvedkvlknklaa.kivydsikdmkt....vGileedke....kkvievavpvGvvaglvpstnptstaiyktlisikarnaivlsphpaakkciietvklirkaaeka..Ga.pegiiasltvptiegtnelmknkdtslilatGGeamvkaayssGk.paiGvGpGngpayieksanvkkavkkildsktfdnGticaseqsvvvekvn 259
                 e+r+ +  a++ ++kl al +     i+ a++da  e+++kl         a e  G   v  k lk + a  +++ + ++ +      +G+++ ++e     ++  ++vp+Gv++ +  s  p s     + +si ++n ++l    +a ++     +++ +a e    Ga  ++iia +t    + ++ l  ++ + l++  G +a+v    +  k p +G   G    y++ sa  + a k ++dskt d+   c +  +++v k++
  MMETSP1061-20121228|1290_1 352 EARDKAVAARNEARKLQALPHSVRQDILMAMADALIEKKEKLIAantidlEAAERDGTALVLKKRLKLTDAKlETLAEGLRQIANlpdpLGVVKSKREladgMELSLITVPIGVLMIIFES-RPDSMPQI-AALSIASGNGLLLKGGKEAVNSNSAIHEVLGDAIESGskGAiKRDIIALITSRG-QVADMLALDEVIDLVIPRGSNALVSYIKANTKiPVLGHADGVCHVYLDESAPADAASKIVVDSKT-DYPSACNAMETLLVHKAT 617
                 7889999999999999999999999999999999999999985422222257889999999999999776653677777776653222289999887632212445689******977766.67776655.567******************999999999998764322441568888888765.78899999****************9877765559******************************9.999999998888888765 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.092
   TIGR02518 352 eeacelsielleneGaGhtlii.hsedkdivrefalkkpvsrllvnt 397
                  e ++ +i+ ++  G Ght +i  s d ++ +ef  +  ++ ++ n+
  MMETSP1061-20121228|1290_1 670 VENMDEAIDWIHAHGSGHTESIvCSPDAEVGEEFLRRVDAACVFKNA 716
                 46678899999999*****8762577889999998777777776665 PP

>> TIGR00746  arcC: carbamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.24        98      32      63 ..      46      77 ..      36      83 .. 0.85
   2 !   23.4   0.0   1.4e-08   5.8e-06     190     289 ..     189     297 ..     180     320 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.24
   TIGR00746 32 akqlvklakrgyelvithGngPqvGalllqne 63
                ++q+++l++rg e+++++  +  +G+ ll+++
  MMETSP1061-20121228|1290_1 46 TEQIAELHARGIEVIFVSSGAVGMGKRLLRKQ 77
                689*************9999988898888776 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 1.4e-08
   TIGR00746 190 GGvPvvkdgkelk...G...veaviDkDlasekLaeevnaDilviltdvdavyvnygkpdekkleevkveeleela..kdgefaaGsmgPkveaaiefvesrgk.kaii 289
                 G vP++++++ ++   G    +   D D  +++ a++ na++lv+ltdv+ vy     +   k+ e+ +ee  ++   ++   + G m+ k+ aa   v  +++ +a +
  MMETSP1061-20121228|1290_1 189 GIVPIINENDAVSanlGytaDDVFSDNDSLAALCARSFNAEVLVLLTDVKGVYDRAPSEPGAKMLELYLEETSDVSigEKSSQGRGGMASKIDAALSAVAPGSDcTACV 297
                 56788888877652222111344569******************************99999***********99762256667889*********99998877764443 PP

>> TIGR02076  pyrH_arch: putative uridylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.6e-08   1.1e-05     119     212 ..     216     311 ..     211     320 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.6e-08
   TIGR02076 119 davaallaEaleadllinitnvdgvYdkDPkkykdakkfkklkaeelveive...ksslkaGssevvDllaakiierskikvivv.ngedpenlvkvk 212
                 d  aal a  ++a++l+ +t+v gvYd+ P++ + ak + +l  ee  +++    +s+ ++G  + +D     ++  s  +++vv  g+d++ + +++
  MMETSP1061-20121228|1290_1 216 DSLAALCARSFNAEVLVLLTDVKGVYDRAPSE-PGAKML-ELYLEETSDVSIgekSSQGRGGMASKIDAALSAVAPGSDCTACVVaAGNDLNTIRAIL 311
                 889***************************99.888776.6777777776653335556788999999888888888877776651566777776654 PP

>> TIGR02075  pyrH_bact: UMP kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.012       4.8       2      50 ..      19      65 ..      18      83 .. 0.78
   2 !   10.7   0.0   0.00015     0.062     133     170 ..     211     247 ..     177     256 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.012
   TIGR02075  2 krvllKlsGeaLakekkfgidekrlekiakeikevvkkgvevgiviGGG 50
                +rv +K+   ++a+e+  + + +rl  i+++i+e++  g+ev  v   G
  MMETSP1061-20121228|1290_1 19 RRVCVKVGTSVVANENG-RPSLTRLGAITEQIAELHARGIEVIFVSS-G 65
                78999986655555555.8999*******************966643.3 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00015
   TIGR02075 133 pffttDtaaalraieieadvilkgkkgvdGvysaDPkk 170
                  f   D+ aal a   +a+v++  ++ v Gvy++ P +
  MMETSP1061-20121228|1290_1 211 VFSDNDSLAALCARSFNAEVLVLLTD-VKGVYDRAPSE 247
                 455689********************.*******9974 PP

>> TIGR00681  kdpC: K+-transporting ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   7.1e-05     0.029      57     123 ..     316     382 ..     302     409 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.1e-05
   TIGR00681  57 qfteegyfhsrPsaiaese..ydaaasggsnlapsnpellkaiaarvealrkenldaavsvpvdlvtas 123
                 +f  +g ++ +P ++ e +  +d + s+gs    s++  +ka+aar ea +++ l+ +v+   d+++a 
  MMETSP1061-20121228|1290_1 316 RFGTKGTLFCKPNSALEKQaiSDYQSSAGSSDDISDEARDKAVAARNEARKLQALPHSVRQ--DILMAM 382
                 6888999999999888877789******************************998887654..455544 PP

>> TIGR01011  rpsB_bact: ribosomal protein S2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1    0.0002     0.084     115     181 ..     401     463 ..     387     481 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0002
   TIGR01011 115 lekkeedgtadkltkkealllsrekekLekslgGikdlkklPdllvvidtkkekiavaearklkiPv 181
                 le+ e+dgta +l k+    l+    kLe   +G++++ +lPd l v+ +k+e     e   + +P+
  MMETSP1061-20121228|1290_1 401 LEAAERDGTALVLKKR----LKLTDAKLETLAEGLRQIANLPDPLGVVKSKRELADGMELSLITVPI 463
                 5555555555554443....4445789**************************99999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 2863.43
//
Query:       MMETSP1061-20121228|1293_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 2455.00
//
Query:       MMETSP1061-20121228|1294_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.09s 00:00:00.24 Elapsed: 00:00:00.30
# Mc/sec: 919.52
//
Query:       MMETSP1061-20121228|1295_1  [L=1072]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1072 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.21s 00:00:00.76 Elapsed: 00:00:00.45
# Mc/sec: 3144.27
//
Query:       MMETSP1061-20121228|1298_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.4    8.5   5.0       0.51    8.2   3.5    1.1  1  TIGR02205 septum_zipA: cell division protein ZipA


Domain annotation for each model (and alignments):
>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.5   0.00012      0.51      27     156 ..      21     143 ..      14     167 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00012
   TIGR02205  27 keksklfdkkklkraklksdddsseelveddeveevrverveheipqpseqkepsiseavdkerkksvedeeasvpaqpvqqqldlpqaekvaqqtvepreaks.lavasaeeeevekalevaakpkekdk 156
                 + k+k+++  ++ r+   sdd++ + + +dd+   +   + e+ + + ++       +avd  + +s  ++ a +p q+ +q ++ pq+++ a +  +   + s  + a ++ e   + ++v a++ ++++
  MMETSP1061-20121228|1298_1  21 ETKQKTKTFTPVIRTVQSSDDED-D-D-DDDD--STASSEEEQTEQEETHDMIKIRQQAVDLLNTPSAGPNAAAIP-QNYKQTYEFPQQRQSAGEAPSYSYQASsHPYAMHNSESHPR-AHV-APELSVTD 143
                 34444444445555533333332.1.1.1222..222222222222222333334445666677888888889999.99999999999999887766655444324444444443333.223.44444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 959.12
//
Query:       MMETSP1061-20121228|1296_1  [L=782]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 2867.10
//
Query:       MMETSP1061-20121228|1301_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1061-20121228|1297_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 2006.23
//
Query:       MMETSP1061-20121228|1302_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 614.26
//
Query:       MMETSP1061-20121228|1303_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 1093.21
//
Query:       MMETSP1061-20121228|1299_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 2188.82
//
Query:       MMETSP1061-20121228|1305_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 2152.16
//
Query:       MMETSP1061-20121228|1308_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.10s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 1171.40
//
Query:       MMETSP1061-20121228|1311_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 554.35
//
Query:       MMETSP1061-20121228|1306_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 1397.53
//
Query:       MMETSP1061-20121228|1310_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.10s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 2169.90
//
Query:       MMETSP1061-20121228|1309_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       339  (0.0826426); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.41
# Mc/sec: 2401.56
//
Query:       MMETSP1061-20121228|1314_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.09s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 607.15
//
Query:       MMETSP1061-20121228|1319_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 295.66
//
Query:       MMETSP1061-20121228|1320_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|1316_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   13.6   0.1     0.0085   13.2   0.0    1.1  1  TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating)


Domain annotation for each model (and alignments):
>> TIGR00078  nadC: nicotinate-nucleotide diphosphorylase (carboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.1e-06    0.0085      31      76 ..     178     222 ..     173     248 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.1e-06
   TIGR00078  31 lvakeegvlaGlevaeevfeelegveveelvkdGeeleagevvael 76 
                 +v +++ v++G++va  +f+++  + + ++++dG+ ++ ge + e+
  MMETSP1061-20121228|1316_1 178 IVIRQNRVVTGVTVALVIFANM-CFLAMWMLADGSIITDGENIQEV 222
                 789*******************.7999***************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       372  (0.0906875); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1138.88
//
Query:       MMETSP1061-20121228|1325_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 508.16
//
Query:       MMETSP1061-20121228|1327_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 364.54
//
Query:       MMETSP1061-20121228|1322_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   10.0  13.5      0.034    9.6   9.4    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   9.4   8.4e-06     0.034     888    1035 ..     278     448 ..     241     452 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 8.4e-06
   TIGR00927  888 kededeGeieaee....dgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdge.....ggsdGGd....seeeeeeeeeeeeeeeeee..eeeeeeee...........neeplslewpetrqkqaiylfllpivfplwltv 1035
                   ++e  G+ ++e+    +g++kG   + ++ e e+   e e+d++++d+++ +++ee+++e+g++e n+   +e+ + e  v++      +gs  Gd    se ee e+  + + e  ++  ++  ee e                  e p+  +k  +  fl+   fp+w +v
  MMETSP1061-20121228|1322_1  278 IDEESGGDSDSEDslpmNGDLKGYVSQRKANE-EGLILE-EEDDEDKDDSKSKAEEESDGEDGDNEFNSTFLDESPKLEADVENSnsnvmNGSAKGDvnveSESEESEDPPN-DVESTDDsvDDPLEEFEgskpargrmlnMRAGNDTEPPDEERKSGLGYFLIVFAFPFWDAV 448 
                  33344445555550000555555555333333.333333.333334444555666777777777777777666666655555543111113444454111133333333332.2222222002222333355677666664334455688999999999999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 1995.18
//
Query:       MMETSP1061-20121228|1328_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.26
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|1323_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       330  (0.0804486); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.32
# Mc/sec: 2450.05
//
Query:       MMETSP1061-20121228|1329_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 628.27
//
Query:       MMETSP1061-20121228|1326_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.48
# Mc/sec: 1938.59
//
Query:       MMETSP1061-20121228|1334_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 1291.20
//
Query:       MMETSP1061-20121228|1330_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 1202.99
//
Query:       MMETSP1061-20121228|1333_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-24   82.6   0.3    7.4e-24   82.6   0.2    1.9  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    5.3e-17   59.3   1.3    1.3e-16   58.0   0.9    1.6  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.2   3.6e-27   7.4e-24       1      83 [.      98     180 ..      98     226 .. 0.85
   2 ?   -1.8   0.2      0.17   3.4e+02      10      86 ..     444     520 ..     438     571 .. 0.58

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 3.6e-27
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfeg 83 
                 +YY++Lgvs +A+++eikk+Y k+a+  HPD+n++++ea +kf++  +Ay+vLs+e+ ra+YD+ g+a++++++  g++++++
  MMETSP1061-20121228|1333_1  98 EYYDLLGVSTNATASEIKKSYYKKARIVHPDKNPDDPEAANKFQQLGHAYNVLSNEQLRANYDKNGKAETTAEEEAGAGQVDA 180
                 6*******************************************************************999876665544433 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.17
   TIGR02349  10 kdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfea 86 
                 +  ++++i+k+ + + +k   D  +++  +++k     +A +vL  e  r   ++f   g+ + + +++a+++++++
  MMETSP1061-20121228|1333_1 444 QAVNKRDIQKTIKGICQKLFADDFRNDVRNSTKSELGLKASQVLRAEAVRILGNEFQAVGALQVNPNTNAKMSADDI 520
                 55666777777777777777777666777777776667777777777777665555555544443333333333333 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.9   6.5e-20   1.3e-16       2      74 ..      97     170 ..      96     189 .. 0.89

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 6.5e-20
   TIGR03835   2 rDyyevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkraryDkyGhDGvDre 74 
                 r+yy+ Lg++ +a  +eikk++ k a+  hPD+n + ++aa+ f+ +  a++vLsn + ra+yDk G      e
  MMETSP1061-20121228|1333_1  97 REYYDLLGVSTNATASEIKKSYYKKARIVHPDKNPDdPEAANKFQQLGHAYNVLSNEQLRANYDKNGKAETTAE 170
                 99********************************999*****************************97655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       300  (0.0731351); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.55
# Mc/sec: 1413.48
//
Query:       MMETSP1061-20121228|1344_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|1341_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          2    5.5  10.1       0.57    7.3   0.9    2.2  2  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1
          2    4.6   9.6        2.1    4.6   5.8    1.6  2  TIGR03734 PRTRC_parB: PRTRC system ParB family protein


Domain annotation for each model (and alignments):
>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.4    0.0063        13     195     239 ..      11      55 ..       1      81 [. 0.53
   2 ?    7.3   0.9   0.00028      0.57       5      56 ..     122     185 ..     118     195 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0063
   TIGR00570 195 aeliaehkeksvklekeveklksekkatfstgikvgaqnslvpvq 239
                 ++ + + + +++k++++++k+k + ++t  t+   +a+ +++ ++
  MMETSP1061-20121228|1341_1  11 NTALYQLTTRAEKKKRKEKKRKEKATTTTTTEASASASAAVLMIS 55 
                 555555555555555555555544444444443334333333333 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00028
   TIGR00570   5 aCPrCkttkyrnPslkllvn....vCghtlCesCvdllfv........rGsgsCpeCdtpLrkn 56 
                 +CP C  +   +P+   l n     Cgh +C  C               G+ +Cp C + Lr +
  MMETSP1061-20121228|1341_1 122 TCPVCFCEPDPDPDDHSLSNwhvtWCGHGICRDCLGQYAAsqvgdreqSGPLKCPVCLKTLREK 185
                 7999999999999877776654337*********976543122222225888999999999975 PP

>> TIGR03734  PRTRC_parB: PRTRC system ParB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   5.8     0.001       2.1     312     371 ..       8      70 ..       5      90 .. 0.77
   2 ?   -3.2   0.0      0.23   4.7e+02     166     211 ..     185     230 ..     177     235 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.001
   TIGR03734 312 taCnaeKVaarkkaekaakaaaekpeaaaagadtaakeksaaeka.....sakaakaaakkaaas 371
                 ++Cn++  +  ++aek+++++ +++e+a+++++t+a+++ +a  a     s ++++a++kk++a+
  MMETSP1061-20121228|1341_1   8 IQCNTALYQLTTRAEKKKRKEKKRKEKATTTTTTEASASASA--AvlmisSRNKKHASKKKNPAE 70 
                 68******************9999999999999999987433..335776666666666665554 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.23
   TIGR03734 166 devleailekkktvaelkkeieklalsLsaAiFdkaeCaaCphnsa 211
                 ++++ a+++ +   + +++   k  ++L  Ai     C  C  ns+
  MMETSP1061-20121228|1341_1 185 KDAIAALMAAENRTELIREWDLKTRNQLLRAIPSFRTCPRCGDNSG 230
                 4555666666666666677777778888899999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1211.00
//
Query:       MMETSP1061-20121228|1347_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 623.95
//
Query:       MMETSP1061-20121228|1350_1  [L=1337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-11   40.1 157.1    7.8e-05   18.4  32.1    4.3  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    6.1e-10   35.2 138.4     0.0003   16.4  16.0    4.3  4  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8  26.7   4.6e-07   0.00094     688     924 ..       9     241 ..       4     249 .. 0.71
   2 !   18.4  32.1   3.8e-08   7.8e-05     708     939 ..     186     423 ..     160     425 .. 0.52
   3 !   15.0  23.2   3.9e-07    0.0008     243     481 ..     391     621 ..     385     645 .. 0.52
   4 !   12.3  27.1   2.5e-06    0.0052     675     921 ..    1059    1305 ..    1041    1334 .. 0.43

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.6e-07
   TIGR02168 688 ieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelre 924
                 +ee e+++a+l+ + +e+  + +ele   e+l++el ++++kl++ ++  ++l+ + e+++ +la+lek+l++ +++ + +++ + +ae+  +e e++  e+e ++ ++++e++a  e+l+ +e+el+e++ e++  e++++ +e e a++e  ++++ +q+e +e+++++++ + +  e+  ++le+ele ++++  ++e+ l++ +e+l++ ++   ++ek + e  +++e++++
  MMETSP1061-20121228|1350_1   9 MEEREAELAALQSAFDEYIASSRELE---EELDAELAKMQEKLADSSAANAALSGQLENIAPQLASLEKALSDSRAKLKVEQKLRRQAEQDQDELEAKYREVEGNLLAIRDECDAVHEELAFKESELEETRLELEI-ERERHAVELEDARAESAIDNTLDQTEGKEKSATAAAPSSDVDEAYVKKLEDELELVTEQLIETEQLLSQTEEKLSNSEAAKPQVEKLLAEGVKSAEKDKT 241
                 66677777777777777777777777...56666666666677777777777777888888888888888888888888888888888888888888888888888888888888888888888888888877774.4455666667777777788888888888888887777777777777888888888888888888888888888877777777777666665555555555 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 3.8e-08
   TIGR02168 708 eleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekelee.......leeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelree..leels.eelrelekkvkelereleelreklaqlelrleeleve 939
                   ++le+ele + ++l e+e+ ls+++++l++ e+   q+e+ la+  k  e+       l+ee ++  ee ++++eel+ ++ee++  ++e+++ +e++++ +++l++l+a+++++ +++++ +    + +++++++  ++  ++e++++l++ei++l+a++++++++++++ eele+++++ ++++++ +++ ++   ++ + +  +e e ++++l+++l+ l+e+++ l+++++ +e+ 
  MMETSP1061-20121228|1350_1 186 YVKKLEDELELVTEQLIETEQLLSQTEEKLSNSEAAKPQVEKLLAEGVKSAEKdktlinvLREENASRLEEEHKLREELELTKEELKLTQEELQAVEEDAQEVSSRLDDLRAQHRQEINNLKSIT----EGNANASKVVGRMVAASEETDSLKDEISRLNAALKNAKKDRDAIVEELEAVNERFDEARQEAEKRGRDsaTSDIRaQVAKEREGEISDLKTQLKTLTEENSYLQQKVDDAEMS 423
                 23455555555555555656666666666655555555555544444333333000000033344444444444444444444444444444444444444444444444444444444444322....33445555556777777778888888888888888888888888888888888877766666655433002233313345666777778888888888888777777777765 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 3.9e-07
   TIGR02168 243 eleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqk 481
                 e e e+++++++l++l++e + l++++++ +  ++  ++++++ q+ ++  ++ +++l++++ + k++l+   k+++e+   ++  e + +++ee++++le+el+++k +l+++ea l  +++e+e ++sr  + e   ++lr + +  +++ +    ++ ++e++ + + +rr+r ++ +  +   l+ +e +l+e  ++ +ele+  ++l+e+++  e ++++lee ++ ++++l++
  MMETSP1061-20121228|1350_1 391 EREGEISDLKTQLKTLTEENSYLQQKVDDAEMSMAITKDSQTRNQEGVEVQSELVKQLQSQLSRSKDELA---KKEKEMAVLVTGMEDRVTKAEENVTKLEQELSTTKGKLAEAEAHLIVSKREAEVAQSRDITREPSRRKLRGDASTRSRSSSIYHPDIVSMEEKQKVMRSRRTRSNSPN--A---LKRLELKLSEEGKKYKELEKDFDKLKEQQRMGESHVKKLEEDIKVLQRQLYA 621
                 3344455555555555555555555555555555555555555555555555555555555555444443...344444444455555555566666666666666666666666666666666666666666666666666666666666666666666666666665555543322222..2...2233355555555555555555555555555555555555555555555544 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 2.5e-06
   TIGR02168  675 lerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleel...erklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaale..keleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelerelee 921 
                   +r+   ++lee++++l++++++++++ +++e++l+ l+++ + ++++l +l   +++ ++ +k le l+k+ +++++r++++++++e+++ee e+ ++el ++++     ++e+e+ ++++++  + l++ +++l+ ++++  + +++a++++  l s  + + a +  ++    ++++ +++ ++ s+++ +++ e   +e+++++  ll+++++ +   +++   +e+ + + + l +k+++  ++++ 
  MMETSP1061-20121228|1350_1 1059 AQRNVTSKNLEETVKTLTDEMKKITRQKQKTESQLNILKKDNNRIQDKLSNLsaaRKAQASDSKTLEVLRKNNNEMAKRWEKEKNAREDAAEELEKSRKELRKLQKDVTSLSREQESMKQKLDEKDRLLEKRTTELRTAKEASAAANIRARKAQV-LGSRARPTTARNtpTKSAGSSSAATSTSSSAGSVTSTVASEEV--AEIRAQVLGLLEKYDKGKV--NRIDIIMEKFKGKEHLLLEKMTQRYESADD 1305
                  33333444444444444444444444444444444433333333333333321113334455555666666666666666666666666666666666666666666666666666666666666666666666666666666666666664332.2222222222220022222222222222222233333333222..3555555555555543332..222222333333333333333333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4  11.5   1.9e-05      0.04     250     371 ..      12     136 ..       7     143 .. 0.36
   2 !   12.3  25.9   2.5e-06    0.0051     292     507 ..     140     358 ..     136     366 .. 0.84
   3 !   13.8  28.7   8.9e-07    0.0018     237     505 ..     355     624 ..     351     647 .. 0.74
   4 !   16.4  16.0   1.5e-07    0.0003     782     926 ..    1060    1207 ..    1037    1310 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 1.9e-05
   TIGR02169 250 leeelekleeeieelekeleeiekkleelnkkiekl...geeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelr 371
                  e+el+ l++  +e  + + e+e++l++  +k++++   ++   +a+  +le++  ++++le+a+++++ +l+  ++ +++ae++ d+l+++ +e+e+++ + + e ++++eel+ ++ elee r
  MMETSP1061-20121228|1350_1  12 REAELAALQSAFDEYIASSRELEEELDAELAKMQEKladSSAANAALSGQLENIAPQLASLEKALSDSRAKLKVEQKLRRQAEQDQDELEAKYREVEGNLLAIRDECDAVHEELAFKESELEETR 136
                 33333333333333333333333333322222222211122223334444444444444444444444444444444444444444444444444444444444444444444444444444443 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.5e-06
   TIGR02169 292 avkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlke...dlekaekelrklkeeleklekelselerelaeleaqakaseees 507
                 ++ ++ + ++ e +++e+ai++  ++ e  e+    a    d  ++ +++le e+e +  +  + ++ l++ +e+l++++a   +v+k  ae ++  ++ k+ ++ l+ee  +   e+++l eel+ ++eel+  ++el+++ee+ +e+ ++l++l+++ +++ ++l+++ e   + +k+  ++ + +ee ++l++e+s l+  l+++++ ++a+ ee 
  MMETSP1061-20121228|1350_1 140 EIERERHAVELEDARAESAIDNTLDQTEGKEKSATAAAPSSDVDEAYVKKLEDELELVTEQLIETEQLLSQTEEKLSNSEAAKPQVEKLLAEGVKSAEKDKTLINVLREENASRLEEEHKLREELELTKEELKLTQEELQAVEEDAQEVSSRLDDLRAQHRQEINNLKSITEgnaNASKVVGRMVAASEETDSLKDEISRLNAALKNAKKDRDAIVEEL 358
                 677777889999999999999999999999999888888888899999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999987611144555567888999999999999999999999999999888765 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 8.9e-07
   TIGR02169 237 ekqkekiekelaeleeelek..leeeieelekel.eeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleela..eeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakasee 505
                  +++e+++++ +e+++e ek   ++  +++++++ +e+e ++++l+++++ l+ee+   +++k+ + +++++ +++++  ++e +e   e ++++++++++ k e   l+++ +e ++  + +++++ +++e+  +l++el   + + ae+ ++l   k++ e ++++    +  +++l   +  ++   +  + ++ ++eek++ + ++++  +  +++k+ e kl++  ++ +++ek   klke+++  e+++++le++++ l+ q  a  e
  MMETSP1061-20121228|1350_1 355 VEELEAVNERFDEARQEAEKrgRDSATSDIRAQVaKEREGEISDLKTQLKTLTEEN-SYLQQKVDDAEMSMAITKDSQTRNQEGVEVQSELVKQLQSQLSRSKDE---LAKKEKEMAVLVTGMEDRVTKAEENVTKLEQELSTTKGKLAEAEAHLIVSKREAEVAQSRDITREPSRRKLRGDASTRSRSSSIYHPDIVSMEEKQKVMRSRRTRSNspNALKRLELKLSEEGKKYKELEKDFDKLKEQQRMGESHVKKLEEDIKVLQRQLYAKGE 624
                 56777777777776666655114566677666651467778899999999888765.468889999999999888888888888888888888888887776655...5555666788899999999999999999999999999999999999999999999999888777777888888888888888888999999999888887766544311677777777777777777777777777777777777777777777776666554444 PP

  == domain 4    score: 16.4 bits;  conditional E-value: 1.5e-07
   TIGR02169  782 ledleaelseekieeieeelekleeevsriearleeieaelnkle...lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkak 926 
                    ++  +  ee ++++++e++k+  + ++ e++l+ + ++ n+ +    +   ++++ +   +  e l ++++e++k+ e+ k   e+ +eele+ ++++r+L++    L++e e ++++l e  +  e+  +e+ ++++  +  + +
  MMETSP1061-20121228|1350_1 1060 QRNVTSKNLEETVKTLTDEMKKITRQKQKTESQLNILKKDNNRIQdklSNLSAARKAQASDSKTLEVLRKNNNEMAKRWEKEKNAREDAAEELEKSRKELRKLQKDVTSLSREQESMKQKLDEKDRLLEKRTTELRTAKEASAAANIR 1207
                  3444555556666666666666666666666666655555555441112222233333333334444455555666666666666666666666666666666666666666666666666665555555555555544444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       701  (0.170892); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.72u 0.17s 00:00:01.89 Elapsed: 00:00:01.36
# Mc/sec: 1297.57
//
Query:       MMETSP1061-20121228|1352_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|1357_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   15.1   0.3       0.18    8.9   0.0    2.1  2  TIGR00375 TIGR00375: TIGR00375 family protein
  ------ inclusion threshold ------
      0.018   12.2   1.0        1.5    5.9   0.1    2.0  2  TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase
      0.022   12.5   0.0        3.1    5.6   0.0    2.5  2  TIGR04137 Chlam_Ver_rRNA: Chlam_Verruc_Plancto small basic protein


Domain annotation for each model (and alignments):
>> TIGR00375  TIGR00375: TIGR00375 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00013      0.18     216     249 ..      12      45 ..       4      55 .. 0.85
   2 !    4.5   0.0    0.0029         4     217     250 ..      79     112 ..      64     128 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00013
   TIGR00375 216 lkkaidkrkiianyGLDPkLGkyhltaCekCyer 249
                  k+  + +++  ny  DPkLG +  t  + C+++
  MMETSP1061-20121228|1357_1  12 YKRRHKTTRVPRNYNADPKLGMWVDTQRSCCKRK 45 
                 57888999****************9999888876 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0029
   TIGR00375 217 kkaidkrkiianyGLDPkLGkyhltaCekCyerf 250
                 k+  + + +  ny  DPkL  +  t  + C+++ 
  MMETSP1061-20121228|1357_1  79 KRRHKTTCVPYNYNADPKLANWVHTQRTYCKRKD 112
                 66667777888*************9999998865 PP

>> TIGR03838  queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.1    0.0011       1.5      42      85 ..      35      77 ..      34      93 .. 0.79
   2 ?    5.2   0.0    0.0018       2.5      44      84 ..     103     142 ..      97     147 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0011
   TIGR03838 42 lDtpRevpgaaeeilatLealglewDeevvyQserkelYqaale 85
                +Dt+R   + +++i ++L+a+g+ wD + ++  + ++++++ +e
  MMETSP1061-20121228|1357_1 35 VDTQRSCCKRKDRI-DRLNAIGFVWDTREILDDNWESMFERLVE 77
                79999999888876.78**********99988887777776665 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0018
   TIGR03838  44 tpRevpgaaeeilatLealglewDeevvyQserkelYqaal 84 
                 t+R+  + +++ +++L+a+g++wD + +  ++ ++++++ +
  MMETSP1061-20121228|1357_1 103 TQRTYCKRKDR-IDRLNAIGFDWDAKAIQYNQWESMFERLV 142
                 55666665555.578**********9997777777777655 PP

>> TIGR04137  Chlam_Ver_rRNA: Chlam_Verruc_Plancto small basic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0    0.0023       3.1      14      33 ..      36      55 ..      30      63 .. 0.87
   2 ?    4.3   0.0    0.0058       7.9      13      33 ..     101     121 ..      96     128 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0023
   TIGR04137 14 arkRnVLkRfERielLkkeg 33
                 ++R+  kR  Ri+ L + g
  MMETSP1061-20121228|1357_1 36 DTQRSCCKRKDRIDRLNAIG 55
                689************98876 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0058
   TIGR04137  13 larkRnVLkRfERielLkkeg 33 
                 + ++R+  kR  Ri+ L + g
  MMETSP1061-20121228|1357_1 101 VHTQRTYCKRKDRIDRLNAIG 121
                 67899999********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 610.45
//
Query:       MMETSP1061-20121228|1359_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 516.48
//
Query:       MMETSP1061-20121228|1354_1  [L=1057]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1057 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.21s 00:00:00.66 Elapsed: 00:00:00.44
# Mc/sec: 3170.74
//
Query:       MMETSP1061-20121228|1358_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 1145.67
//
Query:       MMETSP1061-20121228|1360_1  [L=842]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17   10.2   6.1       0.31    9.4   0.9    2.7  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.9   7.5e-05      0.31       6      21 ..     255     270 ..     254     278 .. 0.84
   2 ?    2.4   0.2     0.012        50       8      21 ..     651     664 ..     647     673 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 7.5e-05
   TIGR01409   6 FLkaaaaagaaaglgl 21 
                  L+a+aaag+a+++gl
  MMETSP1061-20121228|1360_1 255 VLGAVAAAGVAGVVGL 270
                 79************98 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.012
   TIGR01409   8 kaaaaagaaaglgl 21 
                  +a+++gaa+ +++
  MMETSP1061-20121228|1360_1 651 ATAGITGAAGLVTS 664
                 34555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (842 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       739  (0.180156); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        68  (0.0165773); expected 4.1 (0.001)
Passed Fwd filter:                        28  (0.00682594); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.60u 0.28s 00:00:01.88 Elapsed: 00:00:00.97
# Mc/sec: 1145.72
//
Query:       MMETSP1061-20121228|1365_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       382  (0.0931253); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1147.29
//
Query:       MMETSP1061-20121228|1362_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 1182.62
//
Query:       MMETSP1061-20121228|1364_1  [L=929]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.59
# Mc/sec: 2078.27
//
Query:       MMETSP1061-20121228|1377_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   11.7   0.3        0.7    7.9   0.1    2.8  3  TIGR04042 MSMEG_0570_fam: MSMEG_0570 family protein


Domain annotation for each model (and alignments):
>> TIGR04042  MSMEG_0570_fam: MSMEG_0570 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.068   2.8e+02      41      53 ..      10      22 ..       4      58 .. 0.65
   2 ?   -1.3   0.0      0.13   5.2e+02      38      55 ..      58      75 ..      43      78 .. 0.69
   3 ?    7.9   0.1   0.00017       0.7      37      79 ..      82     124 ..      71     133 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.068
   TIGR04042 41 ersreaLeeAser 53
                ++  +aL+ As++
  MMETSP1061-20121228|1377_1 10 KQNGKALQWASKQ 22
                5555666666654 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.13
   TIGR04042 38 dfversreaLeeAserVr 55
                + v++    L+ As+r r
  MMETSP1061-20121228|1377_1 58 EVVKQRGWDLHWASKRLR 75
                455555667888888877 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00017
   TIGR04042  37 adfversreaLeeAserVrakyGfacssaadqlakieaaaarf 79 
                  + v++ +eaL+ Aser r+   ++  + +++   ++ a +r+
  MMETSP1061-20121228|1377_1  82 LEAVKQNSEALHWASERLRDDKEIVLEAVKQEGWALRYASKRL 124
                 56789999*********99876666666555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.10s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 786.20
//
Query:       MMETSP1061-20121228|1374_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 728.58
//
Query:       MMETSP1061-20121228|1381_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1061-20121228|1382_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   11.4   9.9      0.046   11.4   6.9    1.1  1  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family
       0.11    8.9   7.4       0.12    8.7   5.1    1.0  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
        6.2    5.3  12.0         12    4.4   3.0    2.2  2  TIGR02459 CbtB: cobalt transporter subunit CbtB (proposed)


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   6.9   3.3e-05     0.046     114     143 ..      23      52 ..       4      58 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.3e-05
   TIGR04032 114 vavvavaavlavvvvaaVAvatvalaavav 143
                 v +++vaav+a+vvva VA+a+va+aa+a+
  MMETSP1061-20121228|1382_1  23 VGMAVVAAVVAAVVVAVVAAAVVAAAAAAA 52 
                 566778888888888888888888888775 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.1     9e-05      0.12     121     171 ..       5      59 ..       3      60 .. 0.55

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 9e-05
   TIGR02868 121 dalqdllvRvivPlvvAlv...valaavaliallsvaaalvla.aallvalvvap 171
                 da  d  +R ++Pl  A v   v++a+va++ +  vaaa+v+a aa+++ ++v+p
  MMETSP1061-20121228|1382_1   5 DAFGDHELRKLLPLKRARVgmaVVAAVVAAVVVAVVAAAVVAAaAAAALGGFVLP 59 
                 77889999*****998866211444444444443444444433034445556655 PP

>> TIGR02459  CbtB: cobalt transporter subunit CbtB (proposed)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   3.0    0.0088        12      12      36 ..      16      40 ..       9      45 .. 0.85
   2 ?    4.4   3.0    0.0085        12      14      32 ..      39      57 ..      37      59 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0088
   TIGR02459 12 ssvsaarlaaaivaalLGaflvyfv 36
                ++ + ar++ a+vaa+  a++v +v
  MMETSP1061-20121228|1382_1 16 LPLKRARVGMAVVAAVVAAVVVAVV 40
                5678899***************998 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0085
   TIGR02459 14 vsaarlaaaivaalLGafl 32
                v aa++ aa++aa+LG+f+
  MMETSP1061-20121228|1382_1 39 VVAAAVVAAAAAAALGGFV 57
                5678999999******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       634  (0.154559); expected 82.0 (0.02)
Passed bias filter:                      361  (0.0880059); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 259.72
//
Query:       MMETSP1061-20121228|1384_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1061-20121228|1379_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 1071.75
//
Query:       MMETSP1061-20121228|1387_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 403.30
//
Query:       MMETSP1061-20121228|1386_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1125.05
//
Query:       MMETSP1061-20121228|1390_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1043.34
//
Query:       MMETSP1061-20121228|1391_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 597.42
//
Query:       MMETSP1061-20121228|1383_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 1481.21
//
Query:       MMETSP1061-20121228|1393_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-08   30.7   0.0    8.4e-08   30.4   0.0    1.1  1  TIGR00039 6PTHBS: 6-pyruvoyl tetrahydropterin synthase/QueD family protein
    1.6e-07   29.5   0.0    2.1e-07   29.1   0.0    1.2  1  TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD


Domain annotation for each model (and alignments):
>> TIGR00039  6PTHBS: 6-pyruvoyl tetrahydropterin synthase/QueD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   4.1e-11   8.4e-08       7     121 ..      41     161 ..      36     164 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 4.1e-11
   TIGR00039   7 elsfsaaHrlpshes..kCnrlHGHsYkvevevsG.eedkktgmvidfsdLKkivkevideklDHkllnddkeelevstsenvavyifdelkevlkple....dlvkvkieetsaeivvyrg 121
                 + s+  aH+ ++h s    + +HG +Y+ +v   + + +++t +vid+ +  +i+ +v+++    k+l++   ++++ t+e ++++i d+++e l++       +v +k  e+ ++ ++y g
  MMETSP1061-20121228|1393_1  41 RDSLMIAHSFHGHPSfgPAGGMHGATYTCDVDFLSeDLHPETNWVIDIGKALDILGRVLSR-YNLKNLDEVFPDKTMTTTEFMCKQIHDDIRELLETECqefeGAVRIKLFESHKAWATYTG 161
                 667889*******77557789***********88857789********************9.889999988888******************998876533335666666677777777766 PP

>> TIGR03367  queuosine_QueD: queuosine biosynthesis protein QueD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0     1e-10   2.1e-07       5      91 ..      41     131 ..      37     132 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1e-10
   TIGR03367   5 elefdaaHrlpeeeg..kcknlHGHtykvevtvsgev.ldeagmvvdfselkkivkevvdklDHallndvlele.nptaEnlakliyeelk 91 
                 + ++  aH  +++++      +HG ty+  v   +e  + e+++v+d ++  +i+ +v++++  + l +v+  +  +t+E ++k i+++++
  MMETSP1061-20121228|1393_1  41 RDSLMIAHSFHGHPSfgPAGGMHGATYTCDVDFLSEDlHPETNWVIDIGKALDILGRVLSRYNLKNLDEVFPDKtMTTTEFMCKQIHDDIR 131
                 567889********999999***********9766654899****************************9984459***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 1000.92
//
Query:       MMETSP1061-20121228|1392_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-05   20.4   7.2      0.026   12.5   0.0    6.6  8  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1     0.078   3.2e+02      18      29 ..     295     306 ..     293     310 .. 0.82
   2 ?   -0.7   0.0       0.1   4.3e+02      14      29 ..     427     442 ..     424     446 .. 0.81
   3 ?   -0.6   0.1     0.095   3.9e+02       2      15 ..     452     465 ..     451     484 .. 0.57
   4 !   12.5   0.0   6.4e-06     0.026      17      34 ..     509     526 ..     508     527 .. 0.93
   5 ?   -1.3   0.0      0.16   6.5e+02      16      25 ..     546     555 ..     528     561 .. 0.53
   6 ?   -2.3   0.0      0.34   1.4e+03       3      11 ..     569     577 ..     568     578 .. 0.91
   7 !    3.7   0.0    0.0041        17      15      30 ..     590     605 ..     587     605 .. 0.88
   8 ?   -3.8   0.0         1   4.1e+03      21      29 ..     638     646 ..     634     650 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.078
   TIGR00756  18 eAlelfdeMker 29 
                  A e++d+M++ 
  MMETSP1061-20121228|1392_1 295 RADEMLDRMESY 306
                 799******986 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.1
   TIGR00756  14 grveeAlelfdeMker 29 
                 +r   A++l+++M e+
  MMETSP1061-20121228|1392_1 427 NRAVRAEKLLRLMDEN 442
                 566789*******876 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.095
   TIGR00756   2 tyntlisglckagr 15 
                 +y++++++ + +++
  MMETSP1061-20121228|1392_1 452 SYTAVLNCIASSKK 465
                 56666666555443 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 6.4e-06
   TIGR00756  17 eeAlelfdeMkergivPd 34 
                  +A+++f+eM++rg++Pd
  MMETSP1061-20121228|1392_1 509 TKAERIFQEMLDRGMRPD 526
                 59***************9 PP

  == domain 5    score: -1.3 bits;  conditional E-value: 0.16
   TIGR00756  16 veeAlelfde 25 
                 + +++e+f++
  MMETSP1061-20121228|1392_1 546 LVKVEEYFQR 555
                 3455555555 PP

  == domain 6    score: -2.3 bits;  conditional E-value: 0.34
   TIGR00756   3 yntlisglc 11 
                 y+++i +++
  MMETSP1061-20121228|1392_1 569 YTAVIQAYA 577
                 9******98 PP

  == domain 7    score: 3.7 bits;  conditional E-value: 0.0041
   TIGR00756  15 rveeAlelfdeMkerg 30 
                 +v+ +++l+deM+++g
  MMETSP1061-20121228|1392_1 590 SVDRVEDLLDEMLSSG 605
                 6899*********997 PP

  == domain 8    score: -3.8 bits;  conditional E-value: 1
   TIGR00756  21 elfdeMker 29 
                  ++++M+++
  MMETSP1061-20121228|1392_1 638 TVLQKMHSD 646
                 68999*987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 2281.04
//
Query:       MMETSP1061-20121228|1395_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-06   25.1   5.9    0.00043   17.8   0.2    3.8  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0   0.00046       1.9      13      26 .]       5      18 ..       3      18 .. 0.86
   2 !   17.8   0.2   1.1e-07   0.00043       1      25 [.      19      42 ..      19      43 .. 0.97
   3 ?    0.6   0.1     0.026   1.1e+02       1       9 [.      44      52 ..      44      53 .. 0.87
   4 ?    0.5   0.0     0.028   1.2e+02      21      24 ..      68      71 ..      68      73 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00046
   TIGR02167 13 lSnfdTsnVTnMss 26
                + ++ T++VT M++
  MMETSP1061-20121228|1395_1  5 IGSWSTGKVTLMYN 18
                789*******9975 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1.1e-07
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                MF g +++++  ++ +d s+VT M+
  MMETSP1061-20121228|1395_1 19 MFEGATAFNQ-LIDQWDLSSVTSMD 42
                9*********.9************6 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.026
   TIGR02167  1 MFsgCssLt 9 
                MF g s+++
  MMETSP1061-20121228|1395_1 44 MFKGASAFN 52
                9***99987 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.028
   TIGR02167 21 VTnM 24
                VT+M
  MMETSP1061-20121228|1395_1 68 VTDM 71
                9*** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 548.80
//
Query:       MMETSP1061-20121228|1399_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1061-20121228|1401_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-37  126.8   0.0    1.8e-37  126.1   0.0    1.2  1  TIGR01066 rplM_bact: ribosomal protein L13
    0.00056   18.1   0.1     0.0065   14.7   0.1    2.1  1  TIGR01077 L13_A_E: ribosomal protein L13


Domain annotation for each model (and alignments):
>> TIGR01066  rplM_bact: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   0.0   8.8e-41   1.8e-37       8      94 ..       6      92 ..       2      96 .. 0.96

  Alignments for each domain:
  == domain 1    score: 126.1 bits;  conditional E-value: 8.8e-41
   TIGR01066  8 eeverkwyvvdaagktLGrlasevakllrGkhkatytPnvdvGDyviviNaekvkltgkkleqkvyyrhsgyvgglkektlkellek 94
                ++ +r+w++vda+++t+Grla +++++l+Gkhk+t+ Pn d+GD+v+viNaekv+++gkk ++k+y++h+gy+gglke+t+k++++ 
  MMETSP1061-20121228|1401_1  6 QSLQRAWHLVDAKNQTVGRLAGQISQILKGKHKPTFRPNKDMGDHVVVINAEKVQFSGKKWNDKLYRWHTGYPGGLKERTAKDMMAP 92
                5689********************************************************************************984 PP

>> TIGR01077  L13_A_E: ribosomal protein L13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   3.2e-06    0.0065       2      49 ..      14      72 ..      13      94 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.2e-06
   TIGR01077  2 vidaeglilGrLaskvakrlL............eGekvvvvnaekivisGdkevvvekYk 49
                ++da+ + +GrLa ++++ l              G +vvv+naek+  sG+k ++ + Y+
  MMETSP1061-20121228|1401_1 14 LVDAKNQTVGRLAGQISQILKgkhkptfrpnkdMGDHVVVINAEKVQFSGKK-WNDKLYR 72
                6899999999999999854422222222222224778*************76.5555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.35
# Mc/sec: 712.74
//
Query:       MMETSP1061-20121228|1389_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-88  293.7   2.7    2.9e-88  293.2   1.8    1.2  1  TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit
    1.7e-58  195.5   0.0    2.4e-58  195.0   0.0    1.2  1  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
    7.6e-42  141.1   0.7    1.2e-21   75.0   0.1    3.7  2  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
    1.7e-12   45.3   1.2    6.6e-08   30.3   0.1    3.6  2  TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
    2.3e-06   24.6   0.0    3.1e-06   24.1   0.0    1.1  1  TIGR00313 cobQ: cobyric acid synthase CobQ
    3.5e-06   24.9   0.0    0.00048   17.9   0.0    2.6  3  TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
    0.00011   19.4   2.0     0.0031   14.7   0.3    2.3  2  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
    0.00017   18.9   0.0      0.027   11.7   0.0    2.5  3  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00735  hisF: imidazoleglycerol phosphate synthase, cyclase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.2   1.8   5.6e-91   2.9e-88       1     254 []     233     557 ..     233     557 .. 0.98

  Alignments for each domain:
  == domain 1    score: 293.2 bits;  conditional E-value: 5.6e-91
   TIGR00735   1 mlakriipCLdvkd.....grvvkGvqfkn..............lrdaGdpvelakkydeeGadelvflditasse...kretmlevvervaekvfiPltvgGGiksiedvk............kllraGadkvsintaavkape.likeladr............fGsqaivvaidakreaenee........................akyevtikgGrestdldvvewakeveelGaGeilltsmdkdGtksGydlellkkvkeavkiPviasgGaGkaehleeaflkgkadaaLaasvfhkreltieevkeylaergvkvr 254
                 mlakri+  Ldv++     ++v+kG+q++               +r++G+pv la++y++eGade+ fl+it+++e   ++ +ml+v+e++++++f+PltvgGGi++ +d k            +++raGadkvsi+++av+a+e li++ +++            +G+qa+v++id+kr++++++                        +++++t+kgGre++d+ +v+ a+ +++lGaGei+l+++d dG+ +G+dl l+++v+ av+iPvias+GaG+  h+ e+f+k++++aaLaa++fh++e++ie  k+ ++e+ ++ r
  MMETSP1061-20121228|1389_1 233 MLAKRIVVALDVRTndhgdLVVTKGDQYDVresegegtmtgrggVRNLGKPVGLAARYYDEGADEIAFLNITSFREgvvEDMPMLQVLEQASKSIFVPLTVGGGIRTYTDKKsgqtwsalevaaRYFRAGADKVSIGSDAVHAAEsLIARNGEKtgessietisrvYGAQAVVISIDPKRVYVSSKddvddkhvvvdlddgstgpngekfCWFQCTVKGGREERDICAVTVARSAQKLGAGEIMLNCIDMDGQGNGFDLPLMRAVSGAVSIPVIASSGAGNEGHFVEVFTKTDVQAALAAGMFHRKEVEIEACKSAMRENKISAR 557
                 8************99999999********99*********************************************888899***********************************************************99974678888889****************************9999************************************************************************************************************************************999866 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.0   0.0   4.7e-61   2.4e-58       1     197 [.       6     211 ..       6     212 .. 0.94

  Alignments for each domain:
  == domain 1    score: 195.0 bits;  conditional E-value: 4.7e-61
   TIGR01855   1 ivvidygvgNlksvkkalervgaesevvkdskelekadklvlPGVGafkeamkklrele.lellaekvvkkkkpvlgiClGmQllfekseE....gkevkglglikgkvkkleaek.kvPhiGWnevevvkesellkgleeearvYfvHsYaveleee..eavlakady.gekfvaavekdnivgvQFHPEkSgktGlkllknfle 197
                 + ++dyg+gN++sv++a+ ++g+e e ++d  ++++a+++++PGVG++ +amk l+e++  + l+e +  +++p+lgiClGmQ lfe+s+E    +++ +glg+i+gkv k++++k  vP+iGWn     kes++lk +  e+++YfvHsY++++++e  e++l++++y g++f++ v+++ +v++QFHPEkSgktGl++lk fle
  MMETSP1061-20121228|1389_1   6 VSLLDYGAGNVRSVRNAILACGYEIEDITDPAQISEAKAIIFPGVGSYGSAMKVLKEKGfDQPLREYLSGRDRPFLGICLGMQTLFESSDEheegADAIPGLGVIPGKVIKFDETKmAVPQIGWNGRIAHKESPVLKYVAPEESAYFVHSYYAPITDEnrEWILTSTKYsGQSFISGVQRGSVVATQFHPEKSGKTGLNVLKGFLE 211
                 5789*******************************************************7777888889999*****************99322224579************99888**************************************9986789*******99*******************************9987 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.1   0.0   4.2e-20   2.1e-17      26     137 ..     277     416 ..     274     430 .. 0.76
   2 !   75.0   0.1   2.3e-24   1.2e-21     140     231 ..     445     536 ..     438     537 .. 0.95

  Alignments for each domain:
  == domain 1    score: 61.1 bits;  conditional E-value: 4.2e-20
   TIGR03572  26 araiGdpvsaakiynakevDELivlDidaskeer...ekllelieklaeevfvPltvgGGiksled............vkkllkaGadKvsintaalenpe.l............ieeiakkfGsQsvvvsidvkkeleg 137
                  r+ G pv  a  y ++ +DE+ +l i   +e++    ++l+++e+ ++++fvPltvgGGi++  d            + + ++aGadKvsi + a++  e l            ie+i++++G Q+vv+sid k+    
  MMETSP1061-20121228|1389_1 277 VRNLGKPVGLAARYYDEGADEIAFLNITSFREGVvedMPMLQVLEQASKSIFVPLTVGGGIRTYTDkksgqtwsalevAARYFRAGADKVSIGSDAVHAAEsLiarngektgessIETISRVYGAQAVVISIDPKRVYVS 416
                 5889*************************999874445678999*****************986552222222222226789*************99764323222222222222789****************997554 PP

  == domain 2    score: 75.0 bits;  conditional E-value: 2.3e-24
   TIGR03572 140 ykvysdngrkkteldlvelareleelgagEillnsiDrdGtrkGydlelvktvskavkiPvialGGagslddlvevvleagasavaaaslfv 231
                 ++   ++gr++ ++  v +ar++++lgagEi+ln+iD dG+++G+dl l++ vs av+iPvia+ Gag+  ++vev+++++++a+ aa +f+
  MMETSP1061-20121228|1389_1 445 FQCTVKGGREERDICAVTVARSAQKLGAGEIMLNCIDMDGQGNGFDLPLMRAVSGAVSIPVIASSGAGNEGHFVEVFTKTDVQAALAAGMFH 536
                 566778999*******************************************************************************9997 PP

>> TIGR00007  TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0       0.1        52     111     138 ..     226     257 ..     211     271 .. 0.76
   2 !   30.3   0.1   1.3e-10   6.6e-08      29     215 ..     282     529 ..     261     544 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.1
   TIGR00007 111 vkellkelgsekivvslDakeg....evavkG 138
                 v   ++++ +++ivv+lD++ +     v++kG
  MMETSP1061-20121228|1389_1 226 VDPNAETMLAKRIVVALDVRTNdhgdLVVTKG 257
                 56667788889********9885555566665 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.3e-10
   TIGR00007  29 dpleaakkfeeegaellHvVDLdgAkegekknle...vikkiveelevkvqvGGGiRsl............eavekllelgverviigtaavenpelv.............kellkelgsekivvslDakeg................................evavkGWkekselslvelakkleelgleeiilTdiekdGtlsGvnveltkelvkeaeveviasGGvssied.vkalkklgvkgv 215
                 +p+ +a+++ +ega+ +    ++  +eg  ++++   v+++  +++ v++ vGGGiR++            e +++++++g+++v ig+ av+  e +             + + + +g++ +v+s+D k+                                 + +vkG +e+ ++ +v +a+  ++lg+ ei+l  i+ dG+ +G+++ l++ ++ +++++vias G  ++   v+ ++k++v+++
  MMETSP1061-20121228|1389_1 282 KPVGLAARYYDEGADEIAFLNITSFREGVVEDMPmlqVLEQASKSIFVPLTVGGGIRTYtdkksgqtwsalEVAARYFRAGADKVSIGSDAVHAAESLiarngektgessiETISRVYGAQAVVISIDPKRVyvsskddvddkhvvvdlddgstgpngekfcwfQCTVKGGREERDICAVTVARSAQKLGAGEIMLNCIDMDGQGNGFDLPLMRAVSGAVSIPVIASSGAGNEGHfVEVFTKTDVQAA 529
                 577888888888999998888888888877766511155666677889999999999863222222222225688999999999999999998766431211111111111566777888999999999887788888999999999999999*************************************************************************9998766442555666666665 PP

>> TIGR00313  cobQ: cobyric acid synthase CobQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   6.1e-09   3.1e-06     280     407 ..      37     165 ..      26     235 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 6.1e-09
   TIGR00313 280 dslddldvviiPGskdtiadlkalkesklaeeildla..keigiviGicGGyqvlgkelvdkekkesdvgdveGlglldak.tefreekivk.qsqgrveanargekvkGyeiheGltrskasd.kPllever 407
                  +++++ ++i+PG  +  + +k lke+++++ +++++  ++ +  +Gic G q l +    ++++e++   + Glg+++ k  +f e k+ + q     ++  +   v  y   e  ++  +s   P+ +++r
  MMETSP1061-20121228|1389_1  37 AQISEAKAIIFPGVGSYGSAMKVLKEKGFDQPLREYLsgRDRP-FLGICLGMQTLFES---SDEHEEGADAIPGLGVIPGKvIKFDETKMAVpQIGWNGRIAHKESPVLKYVAPEESAYFVHSYyAPITDENR 165
                 689999*****************************97436778.9********99875...3445889999*******9862578887765415444455555666666666666666666664466666665 PP

>> TIGR03800  PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.4e-07   0.00048       9      86 ..      14      93 ..       6     109 .. 0.85
   2 ?    4.0   0.0     0.017       8.7     155     174 ..     180     199 ..     152     210 .. 0.83
   3 ?   -3.8   0.0       4.3   2.2e+03      77     107 ..     459     489 ..     449     490 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 9.4e-07
   TIGR03800  9 GavrehikalealgveavvvkrledldeidglilPGGes.ttlskllektglleplreliks.glPvfGtcaGlillake 86
                G+vr   +a+ a g+e + +  + ++ e   +i PG  s     k+l+++g+ +plre + + + P +G c G+  l ++
  MMETSP1061-20121228|1389_1 14 GNVRSVRNAILACGYEIEDITDPAQISEAKAIIFPGVGSyGSAMKVLKEKGFDQPLREYLSGrDRPFLGICLGMQTLFES 93
                7777778899999***********************55526789**************9864389*********888766 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.017
   TIGR03800 155 ivavrqgnvlassfhPeltd 174
                 i +v++g v+a++fhPe  +
  MMETSP1061-20121228|1389_1 180 ISGVQRGSVVATQFHPEKSG 199
                 6789*************765 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 4.3
   TIGR03800  77 caGlillakeiieakegqlealdlkvernay 107
                 ca  +  + + ++a e  l+ +d+  + n +
  MMETSP1061-20121228|1389_1 459 CAVTVARSAQKLGAGEIMLNCIDMDGQGNGF 489
                 7777777777788888889999998888776 PP

>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.014         7     119     204 ..     284     383 ..     279     395 .. 0.72
   2 !   14.7   0.3     6e-06    0.0031     117     180 ..     459     521 ..     456     558 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.014
   TIGR03151 119 valakrleklGadaviaeGmea..GGhiGelttlalvpqvvdavsiPviaaGGi...adgr.G.......laaa..lalGaeavqlGtrflvakesevhpn 204
                 v la r    Gad + +  + +   G + ++  l++++q ++++ +P+   GGi   +d++ G       + aa  +  Ga+ v +G+  + a es + +n
  MMETSP1061-20121228|1389_1 284 VGLAARYYDEGADEIAFLNITSfrEGVVEDMPMLQVLEQASKSIFVPLTVGGGIrtyTDKKsGqtwsaleV-AAryFRAGADKVSIGSDAVHAAESLIARN 383
                 56777777788887766665553368899999999******************944435542333333222.22336778999999999999988887765 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 6e-06
   TIGR03151 117 asvalakrleklGadaviaeGmeaGGhiGelttlalvpqvvdavsiPviaaGGiadgrGlaaal 180
                  +v++a+  +klGa  ++ + ++  G  G+   l+l++ v+ avsiPvia+ G +++   +  +
  MMETSP1061-20121228|1389_1 459 CAVTVARSAQKLGAGEIMLNCIDMDGQ-GNGFDLPLMRAVSGAVSIPVIASSGAGNEGHFVEVF 521
                 67999*******************997.88889*******************998776666555 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   5.2e-05     0.027      60      85 ..      67      92 ..      10     105 .. 0.59
   2 !    4.4   0.0    0.0094       4.8     157     184 ..     187     213 ..     139     216 .. 0.79
   3 ?   -3.6   0.0       2.6   1.3e+03      41      63 ..     400     422 ..     389     429 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.2e-05
   TIGR00888 60 ekvdekifelgvPvlGiCyGmqllak 85
                + + e++   + P lGiC+Gmq+l +
  MMETSP1061-20121228|1389_1 67 QPLREYLSGRDRPFLGICLGMQTLFE 92
                234566777899**********9976 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0094
   TIGR00888 157 klyGvqfhPevthtekGkellenfvkdv 184
                  +   qfhPe    ++G ++l+ f++ +
  MMETSP1061-20121228|1389_1 187 SVVATQFHPEK-SGKTGLNVLKGFLEAI 213
                 57789*****5.6899********9865 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 2.6
   TIGR00888  41 epkgiilsGgPesvkaenaekvd 63 
                  ++++++s  P+ v+ +  ++vd
  MMETSP1061-20121228|1389_1 400 GAQAVVISIDPKRVYVSSKDDVD 422
                 34678888888877777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1548.12
//
Query:       MMETSP1061-20121228|1402_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 2042.83
//
Query:       MMETSP1061-20121228|1406_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1061-20121228|1405_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.6    3.3  22.7        4.9    2.4  15.7    1.3  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4  15.7    0.0012       4.9     862    1011 ..     246     387 ..     223     391 .. 0.46

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.0012
   TIGR00927  862 ieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeeneeplslew 1011
                  ++a +  e e + +e+e+++ee+a v  ++   + ++ +   + G  g+ ++ +a + +++++kd+g++d+++ +      +++g+ e+   + ++a  de G       +    ee e e+e++e+ee e e e   +++  +p+s ew
  MMETSP1061-20121228|1405_1  246 AQAAHLEENENE-NENEYQNEEDAAVAIAKLYRQ-HTLDSERIAGRWGHFDALDARDCNNSENKDNGDQDNGNGNG---NGNGNGNGEIVLAIADDA--DESGSLSSVSCETN-EEEPEAEDEDDEDEEPELELESSSKSDAGRPVSHEW 387 
                  233233333322.344444444444444333222.22233344555555555555555555444444444433222...222333333333333333..34444333333322.223333333345666666666667777899*****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1426.91
//
Query:       MMETSP1061-20121228|1410_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 629.95
//
Query:       MMETSP1061-20121228|1409_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 680.57
//
Query:       MMETSP1061-20121228|1408_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-159  528.7   0.3   2.3e-159  528.4   0.2    1.0  1  TIGR01060 eno: phosphopyruvate hydratase
    1.7e-07   28.5   0.0    2.6e-07   27.8   0.0    1.2  1  TIGR01928 menC_lowGC/arch: o-succinylbenzoate synthase


Domain annotation for each model (and alignments):
>> TIGR01060  eno: phosphopyruvate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  528.4   0.2  1.1e-162  2.3e-159       1     418 [.      34     456 ..      34     462 .. 0.95

  Alignments for each domain:
  == domain 1    score: 528.4 bits;  conditional E-value: 1.1e-162
   TIGR01060   1 ikdvearevldsrGnPtveveviledgtvgraivPsGastGekealelrdkdkkrylgkGvlkavenvneviapeliGldaldqaeidqilieldgtenksklGanailavslavakaaakalelplyrylggvn.....alvlPvPllniinGGahadnkldlqefmivPvgaeslkealrlgaevfhalkkllkekg..latavGdeGGfaPnlksneealeilveaiekagykpgedvalaldvaasefydeekkkyvlkgeek..sltseelieyleelvekypivsiedglseedwegfaeltkelGdkvqlvGddlfvtnaellkkGiekgvanailiklnqiGtltetleavklakkagytavishrsGetedttiadlavalnagqiktGslsrseriakynqLlrieeelgeeak.yag 418
                 i++++are+ldsrGnPtvevev++e+g + ra vPsGastG  ea+elrd+  +rylgkGvlkav+nvn+v+ap+++G+d++dq++id +++ +dgt+nk+++Ganail+vslav+ka a+a+++ply++ ++        +++PvP  n+inGG+ha nkl +qe++++P ga+s++ea+++g+ev+h+l k++k+k    at +GdeGGfaP  + n+e +e+++ea++++gy  ++  ++ ldvaasef  ++++ y l+ +    +++ e l ++++el + +piv ied+++e+dw  ++++t++  ++ q+vGddl vtn e++ + ie++ + ++l+k+nqiG+++e+++avk ak+ag+ ++ shrsGetedt iadlav+l +gqiktG+  rser+akynqLlrieeelg+e + yag
  MMETSP1061-20121228|1408_1  34 IQSIHAREILDSRGNPTVEVEVTTEQG-LFRASVPSGASTGAYEAVELRDGG-DRYLGKGVLKAVANVNDVLAPAVKGMDVTDQQAIDDAMLAIDGTPNKANMGANAILGVSLAVSKAGAAAKNVPLYQHYADLAgngeeKYTMPVPCFNVINGGSHAGNKLAFQEYFVIPTGATSFSEAMQIGCEVYHTLGKIIKRKFggDATLIGDEGGFAPPCD-NREGCELIMEALRESGY--EDKCTIGLDVAASEFKVKGEDAYDLDFKYDgnKISGESLGDLYQELAADFPIVTIEDPFDEDDWSNWSKFTEKNSEQFQVVGDDLTVTNIEKIGRAIEENSCTCLLLKVNQIGSVSESIAAVKKAKQAGWGVMTSHRSGETEDTYIADLAVGLCTGQIKTGAPCRSERLAKYNQLLRIEEELGAENTlYAG 456
                 789************************.669********************9.9***************************************************************************9877665566699******************************************************995459**************9.9****************..678999***********999999877664433899999************************************************************************************************************************************************988541555 PP

>> TIGR01928  menC_lowGC/arch: o-succinylbenzoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.3e-10   2.6e-07     193     279 ..     308     398 ..     268     402 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.3e-10
   TIGR01928 193 lkeL.drydllyiEePfkadDlselkelkkell...tpiclDEsitslddlrklielgavkviniKpgRlGGltealkviellkehgakvw 279
                  +eL ++  ++ iE+Pf+ dD s+ ++ +++ +     +  D  +t+++++ ++ie ++++ + +K+  +G + e+  ++  +k+ g +v+
  MMETSP1061-20121228|1408_1 308 YQELaADFPIVTIEDPFDEDDWSNWSKFTEKNSeqfQVVGDDLTVTNIEKIGRAIEENSCTCLLLKVNQIGSVSESIAAVKKAKQAGWGVM 398
                 46662478899***************999876511145777889****************************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1467.59
//
Query:       MMETSP1061-20121228|1407_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       423  (0.10312); expected 82.0 (0.02)
Passed bias filter:                      267  (0.0650902); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 1288.47
//
Query:       MMETSP1061-20121228|1418_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       335  (0.0816675); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1191.78
//
Query:       MMETSP1061-20121228|1415_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 2155.82
//
Query:       MMETSP1061-20121228|1414_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.20s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 2396.11
//
Query:       MMETSP1061-20121228|1421_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 725.94
//
Query:       MMETSP1061-20121228|1422_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      242  (0.0589956); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 546.81
//
Query:       MMETSP1061-20121228|1425_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 574.15
//
Query:       MMETSP1061-20121228|1427_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 723.66
//
Query:       MMETSP1061-20121228|1423_1  [L=1065]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.38    8.3  14.5      0.007   13.9   0.7    4.3  5  TIGR03804 para_beta_helix: parallel beta-helix repeat


Domain annotation for each model (and alignments):
>> TIGR03804  para_beta_helix: parallel beta-helix repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.025     1e+02       2      27 ..     333     360 ..     332     363 .. 0.78
   2 ?   -1.9   0.1      0.15   6.2e+02      17      26 ..     375     385 ..     374     388 .. 0.82
   3 ?   -2.3   0.0      0.19     8e+02      17      29 ..     442     455 ..     437     461 .. 0.77
   4 ?   13.9   0.7   1.7e-06     0.007       1      36 [.     507     543 ..     507     551 .. 0.90
   5 ?   -1.5   1.0      0.11   4.4e+02      20      33 ..     954     968 ..     952     972 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.025
   TIGR03804   2 IyLesssnnt.lenNtasnNsy.GIyLy 27 
                 I + + +n   +++  ++ N+  GI ++
  MMETSP1061-20121228|1423_1 333 IKIVGGANTVrITDSDVTHNGKdGIEVQ 360
                 55556666666**************876 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.15
   TIGR03804  17 asnNsy.GIyL 26 
                 +s+N+  GI++
  MMETSP1061-20121228|1423_1 375 LSDNGRnGIHV 385
                 6999999**97 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.19
   TIGR03804  17 asnNsy.GIyLydS 29 
                 +++N   GI +++ 
  MMETSP1061-20121228|1423_1 442 VQDNALdGIDVWNA 455
                 77888888888775 PP

  == domain 4    score: 13.9 bits;  conditional E-value: 1.7e-06
   TIGR03804   1 GIyLesssnntlenNtasnNsy.GIyLydSsnNtlsn 36 
                 GIy++ s + t++n   ++N+  GI +yd ++  l++
  MMETSP1061-20121228|1423_1 507 GIYMWLSKSATITNSVSNGNGMdGIRIYDVADISLKG 543
                 9****************************88887765 PP

  == domain 5    score: -1.5 bits;  conditional E-value: 0.11
   TIGR03804  20 Nsy.GIyLydSsnNt 33 
                 N++ GI+   ++nN+
  MMETSP1061-20121228|1423_1 954 NGNdGISFFITNNNR 968
                 6666***99999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 3514.21
//
Query:       MMETSP1061-20121228|1434_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 316.77
//
Query:       MMETSP1061-20121228|1441_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 246.76
//
Query:       MMETSP1061-20121228|1438_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 436.93
//
Query:       MMETSP1061-20121228|1440_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 1234.28
//
Query:       MMETSP1061-20121228|1447_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.35
# Mc/sec: 192.33
//
Query:       MMETSP1061-20121228|1444_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 1292.10
//
Query:       MMETSP1061-20121228|1446_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-15   55.3   0.7    2.9e-08   31.6   0.1    3.0  3  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.1e-08   32.0   0.4    6.9e-07   27.0   0.3    2.6  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    6.2e-08   30.2   1.2      7e-05   20.3   0.1    2.7  3  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      9e-08   29.5   0.4    3.8e-06   24.2   0.3    2.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.2e-07   29.1   0.2    2.1e-07   28.3   0.1    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    1.3e-07   29.1   0.1      3e-07   27.9   0.1    1.8  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    4.4e-07   26.5   0.1    6.1e-07   26.0   0.1    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    9.3e-07   26.3   0.1    2.1e-06   25.2   0.0    1.6  1  TIGR01500 sepiapter_red: sepiapterin reductase
    2.7e-06   24.8   0.2    9.6e-06   23.0   0.1    1.8  1  TIGR02415 23BDH: acetoin reductases
     0.0013   16.0   0.2      0.004   14.4   0.2    1.8  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
     0.0028   15.0   0.0      0.005   14.2   0.0    1.3  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
     0.0029   14.5   0.1     0.0045   13.9   0.0    1.3  1  TIGR02685 pter_reduc_Leis: pteridine reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   8.4e-11   2.9e-08       1      86 [.     105     190 ..     105     198 .. 0.90
   2 ?    2.6   0.0     0.058        20     161     187 ..     210     236 ..     204     249 .. 0.83
   3 !   18.0   0.0   1.2e-06    0.0004     134     187 ..     253     308 ..     247     319 .. 0.85

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 8.4e-11
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeve..eelgeidilvnnAGi 86 
                 +lv G+srgiG + +k+   +ga+v+ t+r  ++ + e  ++lk++ v+ ++++ld++de+++ ++ +++e  e+++ i  ++ nAGi
  MMETSP1061-20121228|1446_1 105 VLVVGSSRGIGIEFVKQCLGKGATVIATHR--SKDVPESLADLKSSEVNLHTIELDLEDEDSIIQAAKDLEgnENIQPITHIIHNAGI 190
                 69**************************77..456788999999999*******************998863367889*********9 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.058
   TIGR01830 161 slakElasrnitvnavaPGfietdmte 187
                  ++kE+  +  +vn++aP +i+  +  
  MMETSP1061-20121228|1446_1 210 KVTKEVMMKTFEVNTIAPLLIAQSFVP 236
                 5789**************999877655 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 1.2e-06
   TIGR01830 134 ssvvgll...GnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmte 187
                 ss vg +   G+ g   Y +sK+ l  ++ksl+ +la++  +v  + PG+++tdmt+
  MMETSP1061-20121228|1446_1 253 SSKVGSVddnGSGGAYAYRSSKSALNQVAKSLSVDLAEE-ARVVLLHPGWVRTDMTN 308
                 55555432228899999********************86.5999************7 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3     2e-09   6.9e-07       4     189 ..     106     308 ..     104     311 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 2e-09
   TIGR01829   4 lvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakve..aelGpvdvlvnnaGi.....trdavfk.......kmtkeqWeevidtnlnsvfnvtrpvie...gmlergfGriinissvnGl...kGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvk 189
                 lv G+++GiG +  k+   +G +v+a+ ++++    e l + + ++ +++ ++ d+ + ++  +a +++e  +++ p+  ++ naGi       d + +       k+tke   +  ++n  + + +++  +    +  e  +  +  +ss  G     G  G   y ++k+ l  ++k+l+ + a+++  v  + PG++ t+m++
  MMETSP1061-20121228|1446_1 106 LVVGSSRGIGIEFVKQCLGKGATVIATHRSKD--VPESLADLKSSEVNLHTIELDLEDEDSIIQAAKDLEgnENIQPITHIIHNAGIylsgaSFDGTARanraatpKVTKEVMMKTFEVNTIAPLLIAQSFVPllgKRSESLYPVLAFVSSKVGSvddNGSGGAYAYRSSKSALNQVAKSLSVDLAEEA-RVVLLHPGWVRTDMTN 308
                 89*************************99633..3334445555667899*************99999973356789*********94333312322221111112455555555555665555556665554110444455667777888777533368889999******************99876.56689*********85 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   2.1e-07     7e-05       7      91 ..     104     191 ..     101     200 .. 0.86
   2 ?   -0.4   0.0      0.42   1.4e+02     163     186 ..     207     230 ..     193     238 .. 0.80
   3 !    7.2   0.0    0.0019      0.67     152     192 ..     269     308 ..     258     329 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.1e-07
   TIGR01832   7 valvtGantGlGqgiavglaeaGadivgvgis.elsetqekvealGrkflslkadladeeaakalvdea..veeagkidilvnnaGii 91 
                 ++lv G+++G+G  ++      Ga ++++ +s ++ e+ + +++   +++++++dl de+++ +  ++    e+++ i  ++ naGi 
  MMETSP1061-20121228|1446_1 104 TVLVVGSSRGIGIEFVKQCLGKGATVIATHRSkDVPESLADLKSSEVNLHTIELDLEDEDSIIQAAKDLegNENIQPITHIIHNAGIY 191
                 689****************9*******999652799**********************9998777665412567779999******95 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.42
   TIGR01832 163 ltkllanewakkginvnaiaPGyl 186
                  t  +++e   k  +vn+iaP  +
  MMETSP1061-20121228|1446_1 207 ATPKVTKEVMMKTFEVNTIAPLLI 230
                 56678899999*********9766 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0019
   TIGR01832 152 sytasksavaGltkllanewakkginvnaiaPGyletnnte 192
                 +y +sksa+  ++k+l+ ++a++  +v  + PG++ t+ t+
  MMETSP1061-20121228|1446_1 269 AYRSSKSALNQVAKSLSVDLAEE-ARVVLLHPGWVRTDMTN 308
                 899*****************986.58889********9886 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.3   1.1e-08   3.8e-06       3     187 ..     104     306 ..     102     310 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.1e-08
   TIGR01963   3 valvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieava..aefgsldiLvnnAGiqhv............apieefptekfekiiavnltsafhtiraalpimkkqgwG...riiniasvhglv...asafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpL 187
                 ++lv G++ Gig +  k+   +Ga+v+ +  +++  e++a +l+++ ++  ++++d+ +e++i +  + ++  +++  +  ++ nAGi               a+  +   e   k  +vn  +++ + +  +p + k+      ++  ++s  g v   +s    aY ++K +l  ++K+l ++ Ae+  ++  + Pg+vrt +
  MMETSP1061-20121228|1446_1 104 TVLVVGSSRGIGIEFVKQCLGKGATVIATHRSKDVPESLA-DLKSSEVNLHTIELDLEDEDSIIQAAKDLEgnENIQPITHIIHNAGIYLSgasfdgtaranrAATPKVTKEVMMKTFEVNTIAPLLIAQSFVPLLGKRSESlypVLAFVSSKVGSVddnGSGGAYAYRSSKSALNQVAKSLSVDLAEE-ARVVLLHPGWVRTDM 306
                 89************************99998887777665.678889999***********998888877521445556668999999764211111111111223334445556667889999999999999999776644222677777777765333788889********************985.68999********87 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   6.2e-10   2.1e-07       7     206 ..     104     321 ..     100     329 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 6.2e-10
   TIGR03325   7 vvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkv..vgvegdvrllddhkeava..rcveafgkldtlipnagiw......dystalvdipd.drideafdevfeinvkgyllavkaalpalvasrgs...v.iftvsnagfyp.n..gggalytaakhavvglvkelayelapyvrvngvapgglstdlrglksldladksiss 206
                  vlv g + g+g  +v++ + +ga v    +s++  e l   ++++v   ++e d    d+  +a++  +  e++  +  +i nagi+      d ++        +  +e + + fe+n  + ll +++ +p l +   s   v  f  s  g    n  gg   y ++k a+  + k l+ +la   rv  + pg + td+   + l  +d+s+s 
  MMETSP1061-20121228|1446_1 104 TVLVVGSSRGIGIEFVKQCLGKGATVIATHRSKDVPESLADLKSSEVnlHTIELDLEDEDSIIQAAKdlEGNENIQPITHIIHNAGIYlsgasfDGTARANRAATpKVTKEVMMKTFEVNTIAPLLIAQSFVPLLGKRSESlypVlAFVSSKVGSVDdNgsGGAYAYRSSKSALNQVAKSLSVDLAEEARVVLLHPGWVRTDMTNGSGLIDTDESVSG 321
                 589******************************9989888888776522689999998888888887234578899999********83322223222222233313456788899****************999776555222324667788865424115556789***********************************999998888888885 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.1   8.9e-10     3e-07       1     188 [.     105     308 ..     105     330 .. 0.70

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 8.9e-10
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrev.leadiaeh.gayygvvlnagiar.daafpalseedwda....vietnldgf.ynvihplv.....mpmirarkggriitlasvsgvm......gnrgqvnysaakagligatkalavelakrkitvnciapglidtemva 188
                 vlv g+srgig     +   +g  +    rs   d  es+a++++  +n + +++d+ d  ++ ++  + + +e+      ++ nagi    a+f   + ++  a      e  + +f  n i pl+     +p+++ r       la vs  +      g  g   y ++k+ l   +k+l+v+la+    v  + pg + t+m +
  MMETSP1061-20121228|1446_1 105 VLVVGSSRGIGIEFVKQCLGKGATVIATHRS--KDVPESLADLKSSEVNLHTIELDLEDEDSIIQAaKDLEGNENiQPITHIIHNAGIYLsGASFDGTARANRAAtpkvTKEVMMKTFeVNTIAPLLiaqsfVPLLGKRSESLYPVLAFVSSKVgsvddnGSGGAYAYRSSKSALNQVAKSLSVDLAEEA-RVVLLHPGWVRTDMTN 308
                 89*************9999999887554444..467899*******************99876544133333332134556778888864145566555544433111033444555534677776522222699****9998888887776541112224568899********************865.56789*********76 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   1.8e-09   6.1e-07     417     599 ..     105     302 ..      97     329 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.8e-09
   TIGR02632 417 alvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaev..alayGGvdivvnnaGiavs.kpleete....l.......eeWdlnldilatGyflvareaarll..rkqglggnlvfiasknavvakk...nalaysaakaaeahlvrllaielaelgirvntvaPdav 599
                 +lv+G++ GiG e  ++  ++Ga v+ +   ++  e+ a +l+    + +  +++ld+ de+++++a ++     +   +  ++ naGi  s + +++t     +       e   +++++++    l+a+  + ll  r  +l   l f++sk + v ++   +a ay ++k+a +  ++ l+++lae   rv  + P  v
  MMETSP1061-20121228|1446_1 105 VLVVGSSRGIGIEFVKQCLGKGATVIATHRSKDVPESLA-DLK--SSEVNLHTIELDLEDEDSIIQAAKDLegNENIQPITHIIHNAGIYLSgASFDGTAranrAatpkvtkEVMMKTFEVNTIAPLLIAQSFVPLLgkRSESLYPVLAFVSSKVGSVDDNgsgGAYAYRSSKSALNQVAKSLSVDLAEE-ARVVLLHPGWV 302
                 78**********************988776665555544.444..45566778**************99872256789999********98734556554211111111111234467788888889999999988733456788999******9887654122689**********************9.89988888655 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     6e-09   2.1e-06       3     202 ..     105     308 ..     103     329 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 6e-09
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyeril.linnaG......tlgdvskrekels...Dsknvqkyydsnvtslvvltsellkklkel.qgl.ektvvnlssLcaikpfks..walYCaskaaRdmffqvLaleekedvkvLnYapGvlDtdmqs 202
                 +lv G+srG+G e+ ++     + +g +++   R+++   es a++++  s+  +++  ldle +  + +  k le +   e+ + i  +i+naG      +   +++ ++  +     + + k ++ n+++ + ++ +++  l +  ++l +++   +s + ++    s     Y +sk+a +   + L+++  e+ +v+   pG + tdm++
  MMETSP1061-20121228|1446_1 105 VLVVGSSRGIGIEFVKQ----CLGKGATVIATHRSKDV-PESLADLKS--SEVNLHTIELDLEDEDSIIQAAKDLEGN---ENIQPIThIIHNAGiylsgaSFDGTARANRAATpkvTKEVMMKTFEVNTIAPLLIAQSFVPLLGKRsESLyPVLAFVSSKVGSVDDNGSggAYAYRSSKSALNQVAKSLSVDLAEEARVVLLHPGWVRTDMTN 308
                 79*********998665....556899***9***9996.566688988..7888899999999999666666666555...555555326799983333222233444433222111334567899***************999765356525666667778888766541144688***********************************96 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   2.8e-08   9.6e-06       3     190 ..     105     309 ..     103     331 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.8e-08
   TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeave..qaveklGeldvlvnnaGvalv............tpileiteeeleklynvnvkgvlfGiqaaaekfkklkhk.Gkiin.aasiagv...egspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemree 190
                  lv G+++GiG + +++    G  v +a  + + + e   +lk+++ +   ++ld++d +++ +a +  +  e++  +  ++ naG+ l+             +  ++t+e + k ++vn  + l   q+ +  + k  +    ++   +s  g    +gs    ay s+k a+  ++++ + +La++   v    PG v+t+m++ 
  MMETSP1061-20121228|1446_1 105 VLVVGSSRGIGIEFVKQCLGKGATV-IATHRSKDVPESLADLKSSEVNLHTIELDLEDEDSIIQAAKdlEGNENIQPITHIIHNAGIYLSgasfdgtaranrAATPKVTKEVMMKTFEVNTIAPLLIAQSFVPLLGKRSESlYPVLAfVSSKVGSvddNGSGGAYAYRSSKSALNQVAKSLSVDLAEEARVV-LLHPGWVRTDMTNG 309
                 69****************9999765.7788899999*************************9999983346799999**********7652111111111112345799**********************9999888877444443134444431114555566789******************998766.678********874 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   1.2e-05     0.004       5      92 ..     104     192 ..     100     317 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.2e-05
   TIGR03206   5 vaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaa..eealgpvdvlvnnagwdv 92 
                 +++v g + gig    ++   +ga v     +++  e +a+ ++++  + +++  d+ d++s++ a      +e + p+  ++ nag   
  MMETSP1061-20121228|1446_1 104 TVLVVGSSRGIGIEFVKQCLGKGATVIATHRSKDVPESLAD-LKSSEVNLHTIELDLEDEDSIIQAAKDLegNENIQPITHIIHNAGIYL 192
                 899**********************************9985.788999****************9998652268999***9****99654 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.5e-05     0.005       4      94 ..     103     193 ..     100     203 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.5e-05
   TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfr..esgrsldalvcnaavylp 94 
                  tv++ g+s g+g++  k  + kg   v+ + r  +  e+ a+ l  ++ +   ++ldl   ds+ +  +++   e  +++  ++ na +yl 
  MMETSP1061-20121228|1446_1 103 CTVLVVGSSRGIGIEFVKQCLGKG-ATVIATHRSKDVPESLAD-LKSSEVNLHTIELDLEDEDSIIQAAKDLEgnENIQPITHIIHNAGIYLS 193
                 699*********************.788888898888888887.55667777778**************99872245579999*******996 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.3e-05    0.0045       4     204 ..     105     300 ..     102     309 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-05
   TIGR02685   4 alvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeeg.aaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivn.lvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapG 204
                  lv G+++ iG    ++   +G +v +  +rs++  +sla+ l +   n   +++ dl    s++++ +++      +      ++ na  +     + g a    aa  k  +  + + f  n+iapll+ ++f     g+r+e     l+ v   v ++ d    g   y  +k al+ +++s +++la  + rv  + pG
  MMETSP1061-20121228|1446_1 105 VLVVGSSRGIGIEFVKQCLGKGATV-IATHRSKDVPESLAD-LKSSEVN-LHTIELDLEDEDSIIQAAKDLEGN--ENIQPITHIIHNAGIYLSGASFDGTARANrAATPKVTKEVMMKTFEVNTIAPLLIAQSFVPLL-GKRSESLYPVLAFVSsKVGSVDDNGSGGAYAYRSSKSALNQVAKSLSVDLAE-EARVVLLHPG 300
                 5789999999999999999999876.567889999999876.4444444.346788999999999999998654..55667788999999999999999988766255556556666899****************988.8888888888877751577788888889999*******************97.4577777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.49
# Mc/sec: 934.70
//
Query:       MMETSP1061-20121228|1442_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 995.42
//
Query:       MMETSP1061-20121228|1449_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 1839.33
//
Query:       MMETSP1061-20121228|1452_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 740.29
//
Query:       MMETSP1061-20121228|1451_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    8.7  12.3       0.12    8.6   8.5    1.4  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   8.5     3e-05      0.12     308     380 ..      71     157 ..      23     264 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 3e-05
   TIGR02442 308 hRrrrkpfeeeqekeekkleekkeeakpdeekedes.....eekekeeskkqeeeepgkddekeedekeeaeeeaes.........a 380
                 h + ++p +++q+++++++++++++++p +     +     ++k+  +s +++ ++p kdd+++ ++++++e+++ +         +
  MMETSP1061-20121228|1451_1  71 HESSSNPRQQQQQQQQQQQQQQQQQQQPPKRFLGPEfssknKKKSGFKSFSSSFPDPTKDDNNSVQQQQQQEQPPMKndlsmflmmQ 157
                 445566666665555555555554444433333332321112333333444446778889999988888888888763344333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1278.93
//
Query:       MMETSP1061-20121228|1453_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1887.75
//
Query:       MMETSP1061-20121228|1454_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 515.39
//
Query:       MMETSP1061-20121228|1457_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   12.1   2.6      0.045   12.0   1.8    1.1  1  TIGR02473 flagell_FliJ: flagellar export protein FliJ


Domain annotation for each model (and alignments):
>> TIGR02473  flagell_FliJ: flagellar export protein FliJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.8   1.1e-05     0.045      72     113 ..       3      45 ..       1      52 [. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.1e-05
   TIGR02473  72 qldeaieqqqqelaelekeleakrerlleaakelkalek.Lke 113
                 + +e+i+ +q++l++++++le+k +  ++ ++e+  l+k Lke
  MMETSP1061-20121228|1457_1   3 KSKEEIQVLQETLSRTNATLEQKETVFVQLREEKTGLDKhLKE 45 
                 66899*****************************999975665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 388.63
//
Query:       MMETSP1061-20121228|1456_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 521.01
//
Query:       MMETSP1061-20121228|1458_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.18s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|1455_1  [L=724]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.6e-156  519.0   0.0   5.5e-156  518.4   0.0    1.3  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
    1.5e-29  101.4   0.0    2.2e-29  100.9   0.0    1.2  1  TIGR01134 purF: amidophosphoribosyltransferase
    1.4e-13   48.6   0.0    1.9e-13   48.1   0.0    1.2  1  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    1.1e-09   34.9   0.0    6.5e-09   32.4   0.0    1.9  2  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
    6.8e-08   29.4   0.1    1.5e-07   28.3   0.0    1.5  2  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
    5.1e-05   21.1   1.0      0.056   11.2   0.6    3.4  3  TIGR03127 RuMP_HxlB: 6-phospho 3-hexuloisomerase


Domain annotation for each model (and alignments):
>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  518.4   0.0    8e-159  5.5e-156       1     607 []      96     724 .]      96     724 .] 0.87

  Alignments for each domain:
  == domain 1    score: 518.4 bits;  conditional E-value: 8e-159
   TIGR01135   1 CGivgyige...reaaeilleglkrLEYRGYDSaGiAvvee..gklevvk..kkGkveelkeklee.ke.legkvgigHtRWaTHGkpteeNaHPHvdekgeiavvhNGiieNykelreelekkgvefkSdTDtEviahlieeelk....eeedlleavqkalkklrGayalavldkdepeklvaarkesPLivglgegenfvaSdvtallevtrrvvvLedgeialvskdeveikdaegkkverevkvieldaeaaekggyrhfmlkEiyeqpkalretle..grleeeekvleels.aeellkeveritivacGtsyhaglvakylleslakipvevev.aSEfryrkp...vvkkktlviaisQSGETaDtlealrlakekgakvlaivNvkeSalareadavlltrAGpEigVAsTKaftaqlvvlllLalalakargal.kae...eeeelvealeelpelvekvlk.keekikelaeklakkkkflflGRglaypialEgALKlKEisYihAeayaagElKHGpiALiden......lpvvaiapedsllekvksnveEvkaRgaevivlasedaeaeeeeadevikvpeveellaplvsvvplqllayhialakgtdvDkPrnLAKsVTVE 607
                 CGivg+ig+   ++a e+ll+gl  L  RGYDSaGiA+v +  g+++++k  + G  ++  e +++ ++     +gi+HtRWaTHG  t+eNaHPHvd++g+ia+ hNGi++N + lr+el+++g++f+S+TDtEvi++li + ++    ++ +l ea+q al + +G+++la++ +d+p+++v+a ++sPL++g+g + +f+aS+++a+ ++t++++ ++dgei+++++d+ ++ d + k+++        ++ + + + y+h+ lkE+ eqp+a++++l+  gr+++++ +l+ l+ +ee +++++++t+ acGts +a+ +++ ++++l + ++  ++ a E + ++       +kt +i++sQSGET D    + +a +kg ++l++vN+++S +ar+++  ++ +AG E +VAsTKaft+q++vl+l+a +  + r++l  ++   e+  ++++l +lp ++  ++k ++e+ k++ae+l++k++++ lG+g+a p+a EgALK+KE+ Y+hAe+y++g lKHGp ALi+        +p+++++ +d+  +++ s++eEvkaRgae+i+++++ +   +  +d+ i +p+  ++ + l+ v+plql+ay++a  +g ++D PrnLAK+VTV+
  MMETSP1061-20121228|1455_1  96 CGIVGVIGTdknTDAREFLLDGLTILKNRGYDSAGIATVPSdgGAFAITKyaSDGDNADSIELVAQhSQsHGHYTGIAHTRWATHGGKTDENAHPHVDSSGKIALCHNGILNNANDLRRELQAEGHVFTSQTDTEVIVKLIGKFYEegseNGISLKEATQLALDRCDGTWGLAIVCSDTPDEMVVACNGSPLVIGIGADRMFIASETSAFNRYTKTFISMKDGEIGVLHADGRTL-DLTRKQIAP------DQQVKLSPEPYEHWTLKELSEQPEAIAQALNfgGRMSSNRVTLSGLDrNEERMSKIRHMTLSACGTSLNAAKYGERIMKQLGSFDSVASIdAAETEPKDFpcmDCPEKTGLIVVSQSGETKDVHRVVTSAMDKGITSLSVVNAVGSLIARTTKLGVYCNAGRENAVASTKAFTTQVTVLALIACWFRECRDRLaGRSssiEVGLVKDSLMRLPIAIGMAMKtCHEQCKQVAERLKDKEHCFVLGKGFAEPVAYEGALKIKEMCYLHAEGYSGGALKHGPFALIEGAngkfgaTPIIMFILDDQHAHHMRSAAEEVKARGAELIIITDKPSL-ARDLDDDPIVIPRNGPM-TALTGVIPLQLIAYELAKLRGINPDTPRNLAKAVTVD 724
                 *******9844356789*********************9765577777772245655444444444144245569******************************************************************9999966666779**************************************************************************9987764.333333333......3455667789*******************98334666666677777788999*****************************999876655488888776511156799******************************************************************************9998888433211133456899********9999889************************************************************9632333348*********************************97665.57777888998998887.678999*****************************95 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   3.2e-32   2.2e-29       1     225 [.      96     331 ..      96     343 .. 0.78

  Alignments for each domain:
  == domain 1    score: 100.9 bits;  conditional E-value: 3.2e-32
   TIGR01134   1 CgvvGvvseeeaa...eltYyaLlaLQHRGQeaaGvav..sdgeklrlkk..gnGlvsdvfe..eekleklkgkvaagHvRYsTaGsskseeaqPlvvssavgglalaHNGnlvnaeelreeleeegrkfntssDsevllallaee.e...eskeelekavaevlervkGaYalvlmseek.lvavrDPvGvrPLvlgrkedgyvvaSEsvAldlgaelvrdvepgevvvlkdgelesr 225
                 Cg+vGv+ +++++   e + ++L+ L  RG ++aG+a+  sdg  + ++k  + G  +d +e  +++ ++  + ++++H+R++T G +++e+a P v ss   ++al HNG l+na++lr+el++eg+ f++++D+ev+++l+ +  e   e+  +l++a++ +l+r+ G++ l ++ +++    v   +G  PLv+g   d +++aSE++A++  ++++  ++ ge+ vl+ ++++  
  MMETSP1061-20121228|1455_1  96 CGIVGVIGTDKNTdarEFLLDGLTILKNRGYDSAGIATvpSDGGAFAITKyaSDGDNADSIElvAQHSQSHGHYTGIAHTRWATHGGKTDENAHPHVDSSG--KIALCHNGILNNANDLRRELQAEGHVFTSQTDTEVIVKLIGKFyEegsENGISLKEATQLALDRCDGTWGLAIVCSDTpDEMVVACNG-SPLVIGIGADRMFIASETSAFNRYTKTFISMKDGEIGVLHADGRTLD 331
                 999999887766554577889**************987345777776655225676666544224455555677899***********99******98665..79************************************9876433444667788999999*********9987765431233445689.9*****999999**********6666689999***998888876554 PP

>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   2.8e-16   1.9e-13       1     170 [.      96     309 ..      96     360 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 2.8e-16
   TIGR01536   1 CgiagivdlkakakeeeeaikemletlahRGPDaegvwkd.............................e.keenailghrRLaiidlseg..aQPlsnek.evvivfnGEIYNheeLreeleekGyeFetksDtEViLaayeew.............g.eelverLeGmFAfalwdekk.gelflaRDrlGikPLYyaseqgkllfaSEiKallalk 170
                 Cgi+g++  +++++  +e +   l  l+ RG D+ g+                                + + +  +++h R a    ++   a P  + + + ++++nG + N ++Lr+el+++G+ F++++DtEVi++++ ++             + + +++r +G + +a++++ + +e+++a       PL  ++ +++++ aSE  a+ +  
  MMETSP1061-20121228|1455_1  96 CGIVGVIGTDKNTDA-REFLLDGLTILKNRGYDSAGIATVpsdggafaitkyasdgdnadsielvaqhsQsHGHYTGIAHTRWATHGGKTDenAHPHVDSSgKIALCHNGILNNANDLRRELQAEGHVFTSQTDTEVIVKLIGKFyeegsengislkeAtQLALDRCDGTWGLAIVCSDTpDEMVVACN---GSPLVIGIGADRMFIASETSAFNRYT 309
                 ********9886555.5666666899**********755599************************99855677899********99876555899988889****************************************9999999*******98448899*******999998765256666644...37999999999999999998887776 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.065        45       2      38 ..      96     132 ..      95     136 .. 0.94
   2 !   32.4   0.0   9.5e-12   6.5e-09      56     107 ..     184     235 ..     163     248 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.065
   TIGR03104   2 cGiaGelrfdgraadvaavermaaelakrGPdaeGvf 38 
                 cGi G +  d+++   + +      l++rG d++G+ 
  MMETSP1061-20121228|1455_1  96 CGIVGVIGTDKNTDAREFLLDGLTILKNRGYDSAGIA 132
                 *********************************9975 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 9.5e-12
   TIGR03104  56 seasqqPmvdaelglalvfnGaiynykelreelealGyrffsegdtevilka 107
                 +++ + P vd+  ++al +nG + n ++lr+el+a G+ f s++dtevi+k 
  MMETSP1061-20121228|1455_1 184 TDENAHPHVDSSGKIALCHNGILNNANDLRRELQAEGHVFTSQTDTEVIVKL 235
                 678899*******************************************995 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.81   5.6e+02       2      40 ..      96     133 ..      95     136 .. 0.76
   2 !   28.3   0.0   2.2e-10   1.5e-07      60     107 ..     188     235 ..     168     246 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.81
   TIGR03108   2 cGiagifdlegkreidrellkrmnealahrGPdeegvhv 40 
                 cGi+g++ ++++++  + ll     +l+ rG d  g+ +
  MMETSP1061-20121228|1455_1  96 CGIVGVIGTDKNTDAREFLLD-GLTILKNRGYDSAGIAT 133
                 *******99988776555555.55688999999998865 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 2.2e-10
   TIGR03108  60 kqPlanedgsvvvvfnGeiynfkelvkelealGhqfrtksdtevivha 107
                 + P ++  g++++ +nG + n ++l++el+a Gh+f +++dteviv+ 
  MMETSP1061-20121228|1455_1 188 AHPHVDSSGKIALCHNGILNNANDLRRELQAEGHVFTSQTDTEVIVKL 235
                 57889999**************************************85 PP

>> TIGR03127  RuMP_HxlB: 6-phospho 3-hexuloisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.6   8.2e-05     0.056      76     132 ..     450     506 ..     444     522 .. 0.87
   2 ?    3.4   0.0      0.02        14      14      41 ..     560     587 ..     554     604 .. 0.81
   3 ?    1.9   0.0      0.06        41      84     109 ..     643     668 ..     629     684 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.2e-05
   TIGR03127  76 liiiSgSGetksvvkvakkakelgakviaittekestlgkladvvvelpaatkkdke 132
                 li++S SGetk v +v++ a + g + + ++ + +s +++ +++ v  +a +++   
  MMETSP1061-20121228|1455_1 450 LIVVSQSGETKDVHRVVTSAMDKGITSLSVVNAVGSLIARTTKLGVYCNAGRENAVA 506
                 89***************************************9999999988877655 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.02
   TIGR03127  14 aikeeevaklvdkitkakrifvaGaGRS 41 
                 ++ +e+++++++++++ ++ fv+G+G  
  MMETSP1061-20121228|1455_1 560 KTCHEQCKQVAERLKDKEHCFVLGKGFA 587
                 566899*******************965 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.06
   TIGR03127  84 etksvvkvakkakelgakviaittek 109
                 ++++++++a+++k+ ga++i it ++
  MMETSP1061-20121228|1455_1 643 HAHHMRSAAEEVKARGAELIIITDKP 668
                 57899*****************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.40
# Mc/sec: 2389.00
//
Query:       MMETSP1061-20121228|1464_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|1462_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1571.30
//
Query:       MMETSP1061-20121228|1461_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 1795.05
//
Query:       MMETSP1061-20121228|1471_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|1472_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1636.66
//
Query:       MMETSP1061-20121228|1474_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|1479_1  [L=780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    8.7  10.0       0.23    7.7   7.0    1.4  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        2.6    4.4  22.7        4.8    3.5  15.7    1.3  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   7.0   0.00011      0.23     322     450 ..     157     287 ..     133     305 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00011
   TIGR02442 322 eekkleekkeeakpdeekedeseekekeeskkqe...eeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrs.dkrgryvkaernreeaddlavdAtlraaalrqka 450
                 ++++++++ ++++p+ e + ++++ e e +++++   +e+ +k+++++e+e+e++++e e     + +  g+i++vk+  + k   ++  G++   ++ +k+ + + ae++++++++ +  A l   a  + +
  MMETSP1061-20121228|1479_1 157 DDDDNNNN-NNEDPQTELPTTEADGEGEGHEQKTdppTEKADKNEDENENENENNDDEGEGEGGDDDDDGGEIYAVKEAIADKP-PTDPHGKQLWLEAkKKKAAEAIAEIQNRKQKHTHTIANLDCKAHGGPS 287
                 22222222.222222222222212222222222223455666677777777777777777777888999999999999888755.89999**99888866677777777777799999999999877765555 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  15.7    0.0024       4.8     204     281 ..     152     229 ..     144     263 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0024
   TIGR01651 204 gdd.eesedeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaetpgeak 281
                  dd ++++d++++++++p+ +    e+++e+eg+e+ +   +e a+++e+++e+e  + dd+++ + +d+d +  ge  
  MMETSP1061-20121228|1479_1 152 DDDnDDDDDNNNNNNEDPQTELPTTEADGEGEGHEQKTDPPTEKADKNEDENENENENNDDEGEGEGGDDDDD-GGEIY 229
                 3442555666677788999999999999999999999999999999999999999999999998887777766.55543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.19s 00:00:00.60 Elapsed: 00:00:00.47
# Mc/sec: 2190.46
//
Query:       MMETSP1061-20121228|1478_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-93  309.7   0.0    7.8e-93  309.5   0.0    1.0  1  TIGR00066 g_glut_trans: gamma-glutamyltransferase


Domain annotation for each model (and alignments):
>> TIGR00066  g_glut_trans: gamma-glutamyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.5   0.0   1.9e-96   7.8e-93       2     516 ..      48     568 ..      47     570 .. 0.91

  Alignments for each domain:
  == domain 1    score: 309.5 bits;  conditional E-value: 1.9e-96
   TIGR00066   2 lvvslhalaseigekvLkeGgNAiDAAvavalalavvepaasglGGggfllisskktkdtlvidfrekapakatkdmfldksgvalskksetkklAvgvPGtvagleaalkkyG..qlslkdliePaiklaekGfaisealaetlekyeekllttkeeskkv.flkkgkavlkeGdklvqkdLaksLeliaekG.adaFYkgdlaesivdtlqknggiltkkDlasydveirkPlsgdyrgyqvvttpppssgGilllqaLnilenfdlsqyglgsaekiqllaeamklsyadRseylgdpefvdvpleelldkeyakklaesik.inkvkpksklkdgaeqlkeesqTthfsvvDreGNavsltttinlefGsgvvipdtGillnNelddfslkpk...ganavepnkRplssmaPtivlkeekpkl..vvGspGgsriittvlqvivrtldYglelaeavsepRihhqllp..delrlEkfgvakdvlsklkdmGhkvtlkevqd....mgsvnaikvdeegk.lkgvaD 516
                  v+s+++las ig ++L +G+NA+ AA+ v++al+v+ep   glGG+ f+l ++  tk++++++ ++k+      ++   + ++++    + +  Av+vPGt  g+e +lkk G  +  l+d++ePa++lae+Gf+i+ + a++      ++ +  ++++ v +   g    k G+ ++ +dLa +L+ +  kG  + FYkg+  + iv+ +qk gg++t +Dla+ +     P+ ++y + ++ + pp + +Gi+ l aL+ +e  +  + +  s ++++ ++e m+l++ad ++ + d + ++v ++++ld+e   ++a++ +  +k+       +g  ++   s T  f v+D++GNa+s++++ ++ fG+g+v  + G+ l+N+   f++ ++   + n + pnkRp++++ P ++  ++  +l  ++   Gg+ +++  lq+ v++++ gl++++a++ pR+         ++ +Ek +v+ dv++klk+mGhk++   + +    +g ++ ik d+++    +++D
  MMETSP1061-20121228|1478_1  48 CVASSQPLASSIGLDLLRRGANAAEAAIGVSAALGVTEPCSCGLGGDMFCLYYDASTKKVTAFNASGKSASGISLEKVRADCPTPDDY--KFSAHAVTVPGTARGYEDLLKKHGsgKFTLADVLEPAAQLAEEGFPIQTTTAHHWTAGMAQIKKWVDDGEPVpLSVDGSRGPKTGEIIYNPDLARVLRDLGAKGsDEGFYKGETGKAIVEAVQKHGGVMTMEDLANCETCFPDPICTSYHNVKLWEVPP-NGQGIAALIALKGIEAIEEGENEPCSLASYHRMIEMMRLAFADVRAHVADSDHMKVTCDQILDEERLTSRAKKLFdPEKA-----AIPGCPDPS--SCTVSFQVADKDGNAISFVNSNYMGFGTGIVPKGCGFTLQNRGFGFQIGEGkedHSNILAPNKRPYHTILPGMITYKDTDELyaTISNMGGNMQPQGHLQLTVHMVNSGLDPQAAIDMPRFCIADGTqsGRVLMEK-EVPTDVVKKLKEMGHKIQSNVDGHaraiFGRAQIIKKDPATGvWWAGSD 568
                 699*********************************************************************9999998887777777..78999******************988999*************************************9999984556788889**********************6678***********************************************9998.**************************************************************998776666655404444.....468888887..99**********************************************9996667******************9987766663378899*******************************9876554226778899.****************987766545678899999998888764556666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.44
# Mc/sec: 1733.86
//
Query:       MMETSP1061-20121228|1480_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1385.89
//
Query:       MMETSP1061-20121228|1482_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 2639.78
//
Query:       MMETSP1061-20121228|1483_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   13.8   0.1     0.0085   13.3   0.0    1.3  1  TIGR03943 TIGR03943: TIGR03943 family protein


Domain annotation for each model (and alignments):
>> TIGR03943  TIGR03943: TIGR03943 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.1e-06    0.0085      37      72 ..       7      42 ..       1      91 [. 0.79

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.1e-06
   TIGR03943 37 rekeeeaehhhehktklkrrlvylllllpillgllv 72
                 +k+++++hhh++++  k++++ +l ++ +++gll 
  MMETSP1061-20121228|1483_1  7 HQKQQQHHHHHQRRSGQKPSVILILSCVSVVFGLLS 42
                334444499************************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1501.38
//
Query:       MMETSP1061-20121228|1485_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 489.46
//
Query:       MMETSP1061-20121228|1486_1  [L=1236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.6e-125  416.3   0.1   5.2e-123  409.2   0.1    2.7  1  TIGR03670 rpoB_arch: DNA-directed RNA polymerase subunit B
    1.4e-45  153.2   0.1    1.1e-38  130.4   0.0    4.3  4  TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03670  rpoB_arch: DNA-directed RNA polymerase subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  409.2   0.1  2.5e-126  5.2e-123      89     593 ..     703    1233 ..     698    1236 .] 0.84

  Alignments for each domain:
  == domain 1    score: 409.2 bits;  conditional E-value: 2.5e-126
   TIGR03670   89 eGvieyldaeeeenayialseeeltee.hthleidpsailGivaslipyaehnssprntmeaamakqslGlyaanyklrldtrahllhypqvplvktrvlelieyderPagqnlvvavlsyeGyniedalvlnkasierglarsvffrtyea...eerrypgGqedkfeiPekevrgyrseeaykkldedGivapeaevkgkdvligktsPPrfleeleelglaaekrrdssvtvrsgekGivdkvllteseeg...sklvkvrvrderipelGdkfasrhGqkGviGlivpqedmPfteeGivPdlilnPhalPsrmtvgqlleaiagkvaalegrrvdatafe......eekeeelrkelkklGfkedgkevlydgitGekleaeifiGvvyyqklhhlvadklharsrGpvqvltrqPteGrareGGlrfGemerdvlvghGaalllkerlldesdkvvvlvcekcGeiaildkkkkklvcpvcgekekis...........................kvevsyafkllldelkslgiaprl 593 
                  +G  e++   e+    ia   e+++e   th e+dp+ +l ++a+l p+ ++n+sprn ++ +m kq++G +a +  +r+d + + l+ pq p+v+t ++   ++de P g+n+vvavlsy+G+++ed++++nk+s erg++ ++ ++t e    ee + +   + + ++  ++  +  ++  + kl+ dG+ +  + v+++d l         l+++e         rd     +++e+ +v +v +  se+g   ++ + +++r +r p +Gdkf+srhGqkGv+ ++ pq+dmPf+e+Gi Pd+i+nPha+Psrmt+g l+e++agk++al+g   dat+f+      +++++ + ++l+  G++  g e ly+g+ G  l+a+++iGvvyyq+l+h+v+dk++ r++Gpv+ ltrqP  Gr + GG+r+Gemerd l++hG+a+ll++rll+ sdk +++ c +cG++ +  +k++++  +    +e+++                           ++ ++y ++ l++el ++ i+ ++
  MMETSP1061-20121228|1486_1  703 TGKTEMIGPMEQAFMDIACLDEDIREGiTTHQELDPTNMLSLIANLTPFSDQNQSPRNMYQCQMGKQTMGTPAHSLPYRVDNKLYRLQNPQAPVVQTAIHGEYKMDEYPNGTNAVVAVLSYTGFDMEDSVIINKSSYERGFGHASVYKTIEVdlqEEAKMAAQSSTRPNVRFSNKVNRDGQLFHPKLEIDGLPEIGSYVEKGDPLYCV------LDDVE--------NRDRVGKHKESERAYVQSVRMFGSEKGdsqENKASITLRFNRNPVIGDKFSSRHGQKGVLSILWPQQDMPFSESGISPDVIINPHAFPSRMTIGMLVESMAGKAGALHGIFQDATPFSfhesgdQTSVDYFGEQLRAAGYNYYGSEPLYSGVSGCLLQADLYIGVVYYQRLRHMVSDKYQVRATGPVNPLTRQPIKGRKKGGGIRLGEMERDSLLSHGCAFLLQDRLLNCSDKHIAYACCRCGDMLMPTTKRSVILSSGQSREEAMNkaklrlicrspecikhvsedgdddqvePIILPYVYRYLVNELAAMNIKLKM 1233
                  6888999999999999**999999987358************************************************************************************************************************962215555555555555555555556667777889***************9988653......44443........3444445556788888888776655441115678999*******************************************************************************97322221234577889***************************************************************************************************************98877777766555444444443233333334444444444444444333666777777777777777776666 PP

>> TIGR02013  rpoB: DNA-directed RNA polymerase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.3   0.0    0.0025       5.1     353     435 ..     377     457 ..     365     480 .. 0.87
   2 !    6.4   0.0   0.00015      0.31     498     529 ..     548     579 ..     532     582 .. 0.87
   3 !    8.1   0.0   4.7e-05     0.095     751     838 ..     812     907 ..     803     913 .. 0.82
   4 !  130.4   0.0   5.3e-42   1.1e-38    1002    1195 ..     951    1147 ..     910    1151 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0025
   TIGR02013 353 vGryklnkklkleeaelalvltkediiavikyliklkngkaevDDiDhlgnrrvrsvGellenqlrvglarmervvrerlsvk 435
                 +G y +n+ + ++ ++++  l  e ++ v++ l  + +g+  vD+ D l n+ +   G ll++ ++  +  + +++r+ ++v+
  MMETSP1061-20121228|1486_1 377 IGHYIINEYILIHCSNYSDKL--ECLLLVLRKLYAFAAGDCGVDNADSLQNQELLMPGHLLSTMVKEKFEEVLQTIRQGMQVE 457
                 677778887777777766655..6789999************************************************99876 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00015
   TIGR02013 498 fevrDvhpthYGriCPietPeGpniGLinsls 529
                   vr + p  +G +CP+ tP+G   GL++ ls
  MMETSP1061-20121228|1486_1 548 TAVRKLLPDQWGFLCPVHTPDGGPCGLLSHLS 579
                 679999999*******************9997 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 4.7e-05
   TIGR02013 751 LGknvlvafmpWeGynyeDailiser.....lvkdDvftsihi...eefeveardtklGeeeitrdipnvseealrnLdeeGivriGaevkagdiL 838
                  G n +va ++++G++ eD+++i++      + +  v+ +i +   ee ++ a+   + + ++ + +   +     +L+ +G+ +iG++v++gd L
  MMETSP1061-20121228|1486_1 812 NGTNAVVAVLSYTGFDMEDSVIINKSsyergFGHASVYKTIEVdlqEEAKMAAQSSTRPNVRFSNKVNRDGQLFHPKLEIDGLPEIGSYVEKGDPL 907
                 699********************976111124456789999884445778888888999999999999999999999***************9965 PP

  == domain 4    score: 130.4 bits;  conditional E-value: 5.3e-42
   TIGR02013 1002 vyvaqkrkiqvGDkmaGrhGnkGvvskilpieDmPfledGtpvdivLnPLgvPsrmniGqvlelhlglaakklgekgvkiatpv.f....dgaseeevkellekaglprdgkvklyDGrtGekfdekvtvGviYmlkLahlvddklharsiGpYslvtqqPlGGkaqfGGqrfGemevWaLeayGaayiLqelLtvksD 1195
                  + +   r    GDk++ rhG kGv+s + p++DmPf e G   d+++nP + Psrm iG ++e   g a++  g    + atp  f    d +s + + e l+ ag++  g   ly G +G  ++  + +Gv+Y  +L h+v dk   r++Gp   +t+qP+ G+ + GG r+Geme  +L ++G a++Lq+ L   sD
  MMETSP1061-20121228|1486_1  951 ITLRFNRNPVIGDKFSSRHGQKGVLSILWPQQDMPFSESGISPDVIINPHAFPSRMTIGMLVESMAGKAGALHGI--FQDATPFsFhesgDQTSVDYFGEQLRAAGYNYYGSEPLYSGVSGCLLQADLYIGVVYYQRLRHMVSDKYQVRATGPVNPLTRQPIKGRKKGGGIRLGEMERDSLLSHGCAFLLQDRLLNCSD 1147
                  55555677778*****************************************************99999986552..344455322221144556677899999***************************************************************************************98766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.20s 00:00:00.84 Elapsed: 00:00:00.76
# Mc/sec: 2146.56
//
Query:       MMETSP1061-20121228|1488_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1913.84
//
Query:       MMETSP1061-20121228|1489_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 1044.18
//
Query:       MMETSP1061-20121228|1491_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 756.40
//
Query:       MMETSP1061-20121228|1492_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         7  (0.00170648); expected 82.0 (0.02)
Passed bias filter:                        7  (0.00170648); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.67
# Mc/sec: 130.02
//
Query:       MMETSP1061-20121228|1490_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.19s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 1239.23
//
Query:       MMETSP1061-20121228|1497_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.14s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|1498_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.31
# Mc/sec: 234.17
//
Query:       MMETSP1061-20121228|1504_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1375.24
//
Query:       MMETSP1061-20121228|1508_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.27
# Mc/sec: 298.20
//
Query:       MMETSP1061-20121228|1509_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.67    7.8  10.5       0.92    7.3   7.3    1.3  1  TIGR02209 ftsL_broad: cell division protein FtsL
          5    4.1  51.2        5.4    4.0  35.5    1.0  1  TIGR02794 tolA_full: protein TolA
        8.1    3.6  11.2         10    3.2   7.8    1.3  1  TIGR01933 hflK: HflK protein


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   7.3   0.00067      0.92      29      75 ..      15      60 ..       4      64 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00067
   TIGR02209 29 lnselqklqaeieklqkewndLqlEvaelsrheRiekiAkkqLgmkl 75
                +  e ++ +ae +++++e ++L++E ++ ++++R+e++ kk+  ++ 
  MMETSP1061-20121228|1509_1 15 AEEEKKRREAEAKAAEEEKKRLEAEAKAAGEKKRLEAAGKKK-RLEA 60
                5667888899******************************99.7765 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  35.5    0.0039       5.4     108     169 ..       2      64 ..       1      65 [] 0.45

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0039
   TIGR02794 108 ekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKa..ekkakeeAakkaEeeakaka 169
                 ++++k+ e++ak++ee+kk   ea ak+a+E k++ eaeaKa  ekk+ e+A kk+  ea+aka
  MMETSP1061-20121228|1509_1   2 AEEKKRREAEAKAAEEEKKRR-EAEAKAAEEEKKRLEAEAKAagEKKRLEAAGKKKRLEAEAKA 64 
                 222333333333333333333.333445555566666666666666666666666666665555 PP

>> TIGR01933  hflK: HflK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   7.8    0.0077        10     152     196 ..      20      64 ..       2      65 .] 0.78

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0077
   TIGR01933 152 keAFddviaAredeerlineaeayanevvPkarGeAqriieeAkg 196
                 k    ++ aA e+++rl  ea+a  +++  +a G+ +r+  eAk+
  MMETSP1061-20121228|1509_1  20 KRREAEAKAAEEEKKRLEAEAKAAGEKKRLEAAGKKKRLEAEAKA 64 
                 334457888999999999999999999999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       324  (0.0789859); expected 82.0 (0.02)
Passed bias filter:                      188  (0.0458313); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1061-20121228|1513_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00059   17.0 118.0     0.0091   13.1  81.8    1.9  1  TIGR02794 tolA_full: protein TolA
  ------ inclusion threshold ------
        8.7    1.6  42.7        9.1    1.5  29.6    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1  81.8   4.4e-06    0.0091      88     240 ..       3     133 ..       1     134 [] 0.34

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.4e-06
   TIGR02794  88 kkqaaeqarqkelekqraaaekaak.kaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeakKakaeaeaKakae.eakaKaeaeAkaKAeaeAkaKaeaeakakakaeaer 240
                 k+ +ae++  +e e++++a+e+ ++ +ae ++ke+ee+k+q++eaka+++aEak+kae+e+   ++ ++eA+kk Eee+ ++ + eakkkaE +eakkkae+e+k+ +aea++Ka a  e                Ak+Kae e+k   ++eae+
  MMETSP1061-20121228|1513_1   3 KRLEAEAKARAEVEAKKKAEEERKRqEAEVKKKEEEERKRQEAEAKARAEAEAKKKAEEEK---RRLEAEAKKKTEEEQ-KRLETEAKKKAE-AEAKKKAEEEQKRLEAEAKKKAVAYgE----------------AKQKAEEEKK---RLEAEA 133
                 2333333333333333333333333333333333333333444444444444433333332...333333444444444.344444444444.234444444444444444444444344................4444443333...223332 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5  29.6    0.0044       9.1     824     931 ..      11     121 ..       1     134 [] 0.29

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.0044
   TIGR00927 824 eeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdegee...qkveaeeeeeedekdegeed 931
                    evea++++e+e + +e e++ +ee e k +e e++++a+ e++++++e++   eae + +++e+++  e+ea++++e + ++++e   ++ eae ++++    e +++
  MMETSP1061-20121228|1513_1  11 ARAEVEAKKKAEEERKRQEAEVKKKEEEERKRQEAEAKARAEAEAKKKAEEEKRRLEAEAKKKTEEEQKRLETEAKKKAEAEAKKKAEeeqKRLEAEAKKKAVAYGEAKQK 121
                 122444444444444444444444444444444444444443333333433333333333333333333333333222222222211100011111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       784  (0.191126); expected 82.0 (0.02)
Passed bias filter:                      218  (0.0531448); expected 82.0 (0.02)
Passed Vit filter:                        91  (0.0221843); expected 4.1 (0.001)
Passed Fwd filter:                        59  (0.0143832); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.70u 0.16s 00:00:00.86 Elapsed: 00:00:00.79
# Mc/sec: 223.88
//
Query:       MMETSP1061-20121228|1510_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   12.0   4.1      0.038   11.6   2.9    1.2  1  TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase


Domain annotation for each model (and alignments):
>> TIGR00023  TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   2.9   9.3e-06     0.038     118     164 ..       6      56 ..       4      81 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.3e-06
   TIGR00023 118 lslllalimlavwllvllltkyvsLaslvtalvlaiivlvlkldyl....y 164
                 l l+l+l+ l+v ++v+ +  +vs+ s v+  v++ iv+v+ ++y+     
  MMETSP1061-20121228|1510_1   6 LVLVLVLVLLLVVIIVCWFVAVVSIPSAVAVAVAVAIVFVFADEYMyeyeN 56 
                 56778899999999****************************999955441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       516  (0.125792); expected 82.0 (0.02)
Passed bias filter:                      291  (0.070941); expected 82.0 (0.02)
Passed Vit filter:                        57  (0.0138957); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 817.08
//
Query:       MMETSP1061-20121228|1515_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 752.34
//
Query:       MMETSP1061-20121228|1517_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|1520_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 871.13
//
Query:       MMETSP1061-20121228|1516_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1736.16
//
Query:       MMETSP1061-20121228|1524_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.49
# Mc/sec: 1142.11
//
Query:       MMETSP1061-20121228|1519_1  [L=800]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 3406.17
//
Query:       MMETSP1061-20121228|1523_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 2660.09
//
Query:       MMETSP1061-20121228|1522_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-08   29.7   0.0    5.4e-08   28.9   0.0    1.3  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.3e-05   22.6   0.1    2.9e-05   21.5   0.1    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   2.6e-11   5.4e-08      66     185 ..     225     345 ..     218     380 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 2.6e-11
   TIGR03903  66 lrevLaadGaLpaaetgr.LmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgved.adeatltrt..tevlGsPaYaaPeqLRgepvtaks.DlYaWGLivleCLtG 185
                 lr++  a G+ + +et   ++   L  l + h++ vvhRD+kP n++v      ++  ++DFG +a l   ++  +++++ ++  + v  sP YaaPe   +    + s D+++ GLi+   + G
  MMETSP1061-20121228|1522_1 225 LRHIAEALGTTSYEETLDtILPSLLTVLDHVHKHKVVHRDVKPANLLVHD----RNLLLMDFGSAADLEKSGNgWNKQRVGLEngNRVAVSPVYAAPEIFIDLYDAPTSfDVFSAGLIFCQLMFG 345
                 66777777888888887514457889999******************975....56789****999776555414556665542167999********998866655555********9876655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   1.4e-08   2.9e-05      94     136 ..     243     285 ..     209     293 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.4e-08
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivkddklyliDfGLg 136
                  +l ++ +++ ++Hk+++vh D+ ++N++v+d++l+l+DfG +
  MMETSP1061-20121228|1522_1 243 TILPSLLTVLDHVHKHKVVHRDVKPANLLVHDRNLLLMDFGSA 285
                 5666666778899***************************966 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.11s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 2787.48
//
Query:       MMETSP1061-20121228|1525_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.07   10.6   2.2       0.12    9.8   1.4    1.5  1  TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family


Domain annotation for each model (and alignments):
>> TIGR02937  sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   1.4   2.9e-05      0.12      85     147 ..     344     450 ..     210     455 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2.9e-05
   TIGR02937  85 e...........................................keeeeledeedrpeeqeeaeelrerleqalekLperereilklryle.glslkeiAeelgisq 147
                 e                                            + ++l  ++d+ +++  ++el +rl+qal+ Lp + +e+++ r ++  +s kei e l+++q
  MMETSP1061-20121228|1525_1 344 EafvdnllvdfqdddiggvienlpndpdayaestvkledsslldASPYSLSVNVDDANKNPPRDELMDRLSQALSLLPREIQELIVDRLIQaITSPKEIRESLQVTQ 450
                 15555556666666666666666666666665555555555555666666666679999999***************9888888877776626699******99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1818.15
//
Query:       MMETSP1061-20121228|1527_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2067.83
//
Query:       MMETSP1061-20121228|1526_1  [L=1376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.13s 00:00:00.66 Elapsed: 00:00:00.45
# Mc/sec: 4035.93
//
Query:       MMETSP1061-20121228|1528_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-143  477.4   0.0   1.9e-143  477.0   0.0    1.0  1  TIGR01676 GLDHase: galactonolactone dehydrogenase
    1.3e-53  180.3   0.0    2.1e-46  156.6   0.0    2.0  2  TIGR01678 FAD_lactone_ox: sugar 1,4-lactone oxidases
    3.9e-43  145.7   0.0    2.9e-40  136.2   0.0    2.1  2  TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase
    2.7e-20   70.2   0.0    7.4e-20   68.7   0.0    1.6  2  TIGR01677 pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase
    1.3e-16   58.3   0.1    4.1e-16   56.6   0.0    1.7  2  TIGR00387 glcD: glycolate oxidase, subunit GlcD


Domain annotation for each model (and alignments):
>> TIGR01676  GLDHase: galactonolactone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  477.0   0.0  2.3e-146  1.9e-143      46     537 ..      80     569 ..      76     572 .. 0.93

  Alignments for each domain:
  == domain 1    score: 477.0 bits;  conditional E-value: 2.3e-146
   TIGR01676  46 edlhtvsnwsgthevl..trvflqpedleeleqvvktanekkarvrpvgsglspngiglsrlgmvnlalmdkvlevdkekkrvrvqagirvqqlvdaikeygltlqnfasireqqiggivqvgahgtgaklppideqviamklvtpakgtieiskekdpelfylarcglgglgvvaevtlqcverqelvehtylsnmkdikknhkklladnkhvkylyipytdavvvvtcnpis..ksrgppkfkpkytseealqhvrvlyveslkkyrgqvadsaseereidelsftelrdkllaldplnkvhvikvnkaevefwrksegykvgwsdeilgfdcggqqwvsetcfpagtlakpsmkdleyieelkqliekesvpapapleqrwtarsksrmspasssaeddifswvgiimylptsdarqrkeiteeff.hyrhltqallwdkysafehwakievpkdkeelaalqerlkkkfpvdesnkarkeldpnkilsnnkle 537
                 +d   v nwsgth+v    + f +pe++e++e++v++++++ + vrp+gs lspngi l++ gm+ +a md+vle+d e+k+++v+agi v+++++a++ + ltl n+asi eqq+gg  qvgahgtg ++ p+d  v  +k+vtp kgtie +kekd  lf lar+ lg lgvv e+t++c+  +el+eht++   k+    +  ll   kh ++++ipytdav+vvt +     +   p  f      +e  + + vl ++     +g         ++++ + f elrd lla+ pl+  hv + nkae++fw+k egy+v  sde+l fdcggqqwv e cfp+gt    + +d++++e+l q ie +++pa +p+eqrwt+ s s+mspas + e+ +++wvgii ylp+ d  qr++it+ f  +y  l +  +     a+ hw+k+e p    +   l+     +fp+ e+n  r   dp++ilsn  l+
  MMETSP1061-20121228|1528_1  80 NDTTDVINWSGTHKVTvaNKNFWEPESIEDVERIVRDCQKRGQTVRPLGSSLSPNGIALNKDGMISMANMDRVLEIDTENKTITVEAGIPVREVIEALRPHNLTLPNLASIAEQQMGGFTQVGAHGTGKRIAPVDHYVTKLKIVTPGKGTIEFTKEKDGRLFELARVALGCLGVVVEITMECIPAHELIEHTFVLTRKEAMSRKTELLEKHKHARFMWIPYTDAVIVVTNDEFDpaQESKPSAFSDSLGEDEKKKPLTVLLQQL-CLENG----KHFSAEDVKGMGFGELRDTLLAFAPLDVAHVKRCNKAEADFWKKNEGYQVRPSDELLQFDCGGQQWVYEVCFPTGTQDENDNNDMKFMEDLLQKIEENDIPAHSPIEQRWTCGSTSPMSPASGT-EESLYTWVGIINYLPSEDPVQRRDITQLFNtKYTDLVR-HIGRPLMAVSHWSKLEQPTTVWKAVELKTLYLERFPLAEFNTLRGIYDPDNILSNPLLD 569
                 677889*******97522689****************************************************************************************************************************************************************************************************************98765114556888998888888888887776543.22232....23345699****************************************************************************************************************9765.789***********************998625766665.5667899************************************************9886 PP

>> TIGR01678  FAD_lactone_ox: sugar 1,4-lactone oxidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0   2.5e-49   2.1e-46       6     241 ..      87     323 ..      83     329 .. 0.93
   2 !   21.7   0.0   2.2e-08   1.8e-05     286     436 ..     397     564 ..     387     566 .. 0.71

  Alignments for each domain:
  == domain 1    score: 156.6 bits;  conditional E-value: 2.5e-49
   TIGR01678   6 nWakiysa..kperyfqPksveevrellksareaekklkvvGsGhsPsdivvtdgylvsldklnkvlkfdeekaditveaGirlyqlneildekGyslsnlGsisevsvaGiistgthgsslkhgllssqvvaltivl.adGellelseerdkdvfkaarvslGalGiivsvtirvvPafdlketeevitleellkdldsllkssefirvlwfPytekvvlwranktekapsspakslw 241
                 nW++++ +    ++++ P+s+e+v  ++ + +++++ ++ +Gs  sP  i+  ++ ++s+  +++vl++d e++ itveaGi + ++ e l  + ++l+nl si+e+ + G    g+hg++ +   + ++v +l+iv+ ++G + e  +e+d  +f+ arv lG+lG++v++t++++Pa +l e  +v t +e +    +ll++  + r++w Pyt+ v+++ +++ + a++s   s +
  MMETSP1061-20121228|1528_1  87 NWSGTHKVtvANKNFWEPESIEDVERIVRDCQKRGQTVRPLGSSLSPNGIALNKDGMISMANMDRVLEIDTENKTITVEAGIPVREVIEALRPHNLTLPNLASIAEQQMGGFTQVGAHGTGKRIAPVDHYVTKLKIVTpGKGTI-EFTKEKDGRLFELARVALGCLGVVVEITMECIPAHELIEHTFVLTRKEAMSRKTELLEKHKHARFMWIPYTDAVIVVTNDEFDPAQESKP-SAF 323
                 999998651167899**************************************************************************************************************************9456666.567899***************************************************************************999998754.333 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 2.2e-08
   TIGR01678 286 satdsikvlnmeclfsqfvdeWgiPlekakea...lrelkasiadaakkkevyvhvPvevrvsattledeillsplekvdtlyinaiiyrPfgkdvpikkyfkafedi...mkkagGkP.....hWakefs.......vkkekdyeeeyedlkkflkirkkldPkgvfl 436
                 ++ +s + l+++c  +q+v e   P     e      ++ + + ++ ++ ++ +h P+e r + ++       s +e+    ++ +i y P    v++++  ++f++    + +  G+P     hW+k  +       v  +++y e ++ l  f  +r   dP++++ 
  MMETSP1061-20121228|1528_1 397 QVRPSDELLQFDCGGQQWVYEVCFPTGTQDENdnnDMKFMEDLLQKIEENDIPAHSPIEQRWTCGSTSPMSPASGTEESLYTWVGIINYLPSEDPVQRRDITQLFNTKytdLVRHIGRPlmavsHWSKLEQpttvwkaVELKTLYLERFP-LAEFNTLRGIYDPDNILS 564
                 56789999*****************865555410044555666777778899*********9999444333344444444566899**********999988888765111446679994444455554448885555444555544454.899************975 PP

>> TIGR01679  bact_FAD_ox: FAD-linked oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.2   0.0   3.6e-43   2.9e-40       3     232 ..      87     321 ..      85     346 .. 0.93
   2 !    7.5   0.0   0.00044      0.36     299     419 .]     431     573 ..     421     573 .. 0.76

  Alignments for each domain:
  == domain 1    score: 136.2 bits;  conditional E-value: 3.6e-43
   TIGR01679   3 nWsGv..qvaePaaivaPkdegeladvvkvaakp...vravGsGhsftdlaktdGtlvsleklegvvdvdqqkdeatvkaGtrlgalgpllaekgrglenlgdidkqsigGalgtathGtGvklqalharvvslrlvtasGkvldlseaddqeiflaarvslGalGvisqvtlrtvalfrlrrrkwlrpleealekldelvaahrsfefyvvPfagkaltitsdesdeaakarqr 232
                 nWsG+  ++++ +   +P++  ++  +v+  +k+   vr++Gs  s   +a  +  ++s+ ++++v+++d +++ +tv+aG  ++ + + l  + ++l+nl+ i +q +gG +   +hGtG ++  +   v+ l++vt++   +++++ +d  +f+ arv+lG lGv+ ++t++ ++ + l  ++++ + +ea+ +  el+++h+++ f  +P+++  + +t+de d a +++++
  MMETSP1061-20121228|1528_1  87 NWSGThkVTVANKNFWEPESIEDVERIVRDCQKRgqtVRPLGSSLSPNGIALNKDGMISMANMDRVLEIDTENKTITVEAGIPVREVIEALRPHNLTLPNLASIAEQQMGGFTQVGAHGTGKRIAPVDHYVTKLKIVTPGKGTIEFTKEKDGRLFELARVALGCLGVVVEITMECIPAHELIEHTFVLTRKEAMSRKTELLEKHKHARFMWIPYTDAVIVVTNDEFDPAQESKPS 321
                 9***822456677889*****************999*********************************************************************************************************************************************************************************************9988887554 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00044
   TIGR01679 299 ngrkaleevielvekrspevffPievrsvapddaflspfyarptc...siavhaya.......asdfeslfraveeifrryeGrP.....hWGklhs....lkaadlkelyPr...WddflavrddldPearflnpylkgllG 419
                 n+ k +e++++ +e++  +   Pie r      + +sp+ + + +    + + +y        + d ++lf+     + r+ GrP     hW kl +     ka +lk ly       +f  +r   dP++ + np l  +lG
  MMETSP1061-20121228|1528_1 431 NDMKFMEDLLQKIEENDIPAHSPIEQRWTCGSTSPMSPASGTEESlytWVGIINYLpsedpvqRRDITQLFNTKYTDLVRHIGRPlmavsHWSKLEQpttvWKAVELKTLYLErfpLAEFNTLRGIYDPDNILSNPLLDLVLG 573
                 7788999999999999999999***99999999999999998864222688888862111111445666666655556677899888888****97522226899****9964222479999**************9998887 PP

>> TIGR01677  pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.0   9.1e-23   7.4e-20      36     257 ..     100     307 ..      75     328 .. 0.82
   2 ?   -2.0   0.0      0.24     2e+02     458     513 ..     506     573 ..     476     576 .. 0.59

  Alignments for each domain:
  == domain 1    score: 68.7 bits;  conditional E-value: 9.1e-23
   TIGR01677  36 avaypateeelvkvvaaataknlkvkvvtryshsipklacpdgsdgeallistkrlnsvvavdaealtvtvesGvslrelieeaekaGlalpaapyweGlsvGGllstGahGsslwGkGsavhdyvvelrlvvpasaaeGfakvvvleeadddaelnaakvslGvlGviskvtlaleplfkr.svtyelrddsdledqvvkfgkkhefaditwypsqkkavyr 257
                 +   p++ e++ ++v +  ++++ v+       s++    + + dg   +is +++++v+++d+e +t+tve+G+++re+ie+     l+lp         +GG+   GahG+    + + v +yv++l++v+p++ +  f+k       +d  +++ a+v+lG lGv+ ++t++  p+      t+ l+  +++    ++  +kh+ a ++w p  + ++  
  MMETSP1061-20121228|1528_1 100 NFWEPESIEDVERIVRDCQKRGQTVRPLG---SSLSPNGIALNKDG---MISMANMDRVLEIDTENKTITVEAGIPVREVIEALRPHNLTLPNLASIAEQQMGGFTQVGAHGTG--KRIAPVDHYVTKLKIVTPGKGTIEFTK------EKDGRLFELARVALGCLGVVVEITMECIPAHELiEHTFVLTRKEAMSR-KTELLEKHKHARFMWIPYTDAVIVV 307
                 34447888888888888888888877653...34444444445666...8**************************************************************85..467889************998777665......345689********************9999875257888888888765.578899***********98877654 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.24
   TIGR01677 458 lalvkygakp.....hwgknrk..lafvGvkrky...pn..ldkflkvkdkldpkglfssewsdeilg 513
                   lv++ ++p     hw+k  +    ++ v+ k    ++  l +f  ++  +dp++++s    d +lg
  MMETSP1061-20121228|1528_1 506 TDLVRHIGRPlmavsHWSKLEQptTVWKAVELKTlylERfpLAEFNTLRGIYDPDNILSNPLLDLVLG 573
                 45555555544444478775541144566665542233311457899999999999999988888887 PP

>> TIGR00387  glcD: glycolate oxidase, subunit GlcD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0     5e-19   4.1e-16       4     179 ..     104     270 ..     102     285 .. 0.89
   2 ?   -1.5   0.0      0.22   1.8e+02     393     411 ..     547     566 ..     532     567 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 5e-19
   TIGR00387   4 PknteqvarilklCserrikvvprGagtglsGgalpeegglvlvfkrlnkileideenltavvqPGvinkeleeaveeknlfyppDPssqkastiGGniaenaGGlrglkYGvtvdyvlglevvladGeilriggktvkdvaGydltkLlvgsEGtLgivteiilkllpkPelkkv 179
                 P+  e+v ri++ C++r   v p G++    G al ++g  +  +++++++leid+en+t++v+ G+  +e+ ea+ ++nl+ p + +s     +GG    +a G  g +   + +yv +l++v++    ++    + kd   ++l+++ +   G+Lg+v ei++  +p  el++ 
  MMETSP1061-20121228|1528_1 104 PESIEDVERIVRDCQKRGQTVRPLGSSLSPNGIALNKDGM-IS-MANMDRVLEIDTENKTITVEAGIPVREVIEALRPHNLTLP-NLASIAEQQMGGFTQVGAHGT-GKRIAPVDHYVTKLKIVTPGKGTIEF--TKEKDGRLFELARVAL---GCLGVVVEITMECIPAHELIEH 270
                 8999***********************9999999988765.44.7*************************************86.67899999*******999995.7889999************9999993..4457777888888765...8************999988765 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.22
   TIGR00387 393 leimravkkafdPknil.nP 411
                 l  +++++ ++dP+nil nP
  MMETSP1061-20121228|1528_1 547 LAEFNTLRGIYDPDNILsNP 566
                 6678999********98455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 2327.81
//
Query:       MMETSP1061-20121228|1529_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1913.84
//
Query:       MMETSP1061-20121228|1532_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1461.66
//
Query:       MMETSP1061-20121228|1533_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 648.47
//
Query:       MMETSP1061-20121228|1531_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 1384.19
//
Query:       MMETSP1061-20121228|1536_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.33
# Mc/sec: 551.95
//
Query:       MMETSP1061-20121228|1534_1  [L=776]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       433  (0.105558); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.12s 00:00:00.50 Elapsed: 00:00:00.61
# Mc/sec: 1679.07
//
Query:       MMETSP1061-20121228|1538_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.43
# Mc/sec: 267.05
//
Query:       MMETSP1061-20121228|1537_1  [L=954]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       397  (0.0967821); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.12s 00:00:00.58 Elapsed: 00:00:00.47
# Mc/sec: 2679.10
//
Query:       MMETSP1061-20121228|1535_1  [L=1004]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       366  (0.0892248); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.14s 00:00:00.86 Elapsed: 00:00:00.68
# Mc/sec: 1948.78
//
Query:       MMETSP1061-20121228|1539_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1724.37
//
Query:       MMETSP1061-20121228|1543_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2530.55
//
Query:       MMETSP1061-20121228|1541_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-26   91.0   1.5    3.1e-26   90.8   0.2    1.5  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
      4e-24   82.8   0.3    7.5e-24   81.9   0.2    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    7.2e-13   46.4   0.5    1.7e-12   45.2   0.3    1.7  1  TIGR01068 thioredoxin: thioredoxin
    0.00023   17.7   0.1    0.00032   17.2   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
  ------ inclusion threshold ------
      0.014   12.9   0.0      0.033   11.7   0.0    1.6  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.2   3.7e-29   3.1e-26       4     108 ..     156     261 ..     153     269 .. 0.96

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 3.7e-29
   TIGR01130   4 leltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrnge.sssdYnGpReaegivkylkkqs 108
                 +el+++nf++ ++ene++ v  YAPWC  C++LaP +ek A e+kk +++v +++vD+ ++++l++  +v  +PtL+++ +g+  + dY+  R+ +++v + k++ 
  MMETSP1061-20121228|1541_1 156 MELNNDNFKKWMEENEMAFVDMYAPWCVWCQRLAPTWEKFAVEVKKLNMPVGIGNVDCMKNADLCRDEKVMAFPTLRWYEQGKaVTPDYKMDRTVQAMVGFAKRKL 261
                 789********************************************************************************8889**************99886 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.9   0.2   9.2e-27   7.5e-24       1     104 [.     158     260 ..     158     261 .. 0.97

  Alignments for each domain:
  == domain 1    score: 81.9 bits;  conditional E-value: 9.2e-27
   TIGR01126   1 lvaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefveek 104
                 l+++nf++ +  en++++v+ yaPWC  C++laP++ek a e+kk +  v i++vd+ ++ +l+++ kv +fPtl+++++gk+ + dy+ +R+ +++v f ++k
  MMETSP1061-20121228|1541_1 158 LNNDNFKKWME-ENEMAFVDMYAPWCVWCQRLAPTWEKFAVEVKKLNMPVGIGNVDCMKNADLCRDEKVMAFPTLRWYEQGKAVTPDYKMDRTVQAMVGFAKRK 260
                 6899****999.8*************************************************************************************998865 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.3   2.1e-15   1.7e-12       2      82 ..     159     241 ..     158     260 .. 0.89

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 2.1e-15
   TIGR01068   2 seenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakelee...kvkvvKlnvdeeqeiaakygirsiPtlllfkngkevk 82 
                 +++nf++++++++ ++ vD +A+WC  C+ laP+ e++a e+++    v +  ++  ++ ++ ++ ++++ Ptl  +++gk v+
  MMETSP1061-20121228|1541_1 159 NNDNFKKWMEENE-MAFVDMYAPWCVWCQRLAPTWEKFAVEVKKlnmPVGIGNVDCMKNADLCRDEKVMAFPTLRWYEQGKAVT 241
                 6789*****9975.************************977654222789999***************************9986 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     4e-07   0.00032     340     443 ..     139     241 ..     113     259 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4e-07
   TIGR00424 340 eskaavadifesnnvvalsrqgienllkleerkeawlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfpkrssra 443
                 e +++++++ e + v a+  +  +n+ k  e +e  +v +yapwc +cq +  ++ ++a  +      v+  + d  +++   ++ ++ +fpt+  + +  + +
  MMETSP1061-20121228|1541_1 139 EHDQTLEEMHEEDGVHAMELN-NDNFKKWMEENEMAFVDMYAPWCVWCQRLAPTWEKFAVEVKKLNMPVGIGNVDCMKNADLCRDEKVMAFPTLRWYEQGKAVT 241
                 456788888888888887765.58999999999************************99999888888888888887776666666777888887776655544 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0     4e-05     0.033      27      81 ..     147     201 ..     126     216 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4e-05
   TIGR02738  27 Llaeeesltaaqdekpv.grkvlledyklvlfyqstCpyChqfapvLkqlsqqtgl 81 
                 + +ee+ ++a + ++   ++ +  ++ ++v +y   C +C++ ap+  +++ +++ 
  MMETSP1061-20121228|1541_1 147 M-HEEDGVHAMELNNDNfKKWMEENEMAFVDMYAPWCVWCQRLAPTWEKFAVEVKK 201
                 3.3344444444444433777888999***********************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2272.10
//
Query:       MMETSP1061-20121228|1544_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 1202.57
//
Query:       MMETSP1061-20121228|1546_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1775.25
//
Query:       MMETSP1061-20121228|1540_1  [L=1150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.11s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 2710.49
//
Query:       MMETSP1061-20121228|1545_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 966.16
//
Query:       MMETSP1061-20121228|1547_1  [L=777]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.47
# Mc/sec: 2182.03
//
Query:       MMETSP1061-20121228|1548_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 1975.44
//
Query:       MMETSP1061-20121228|1551_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   35.8  56.8    1.1e-09   35.8  39.4    2.7  2  TIGR02794 tolA_full: protein TolA
  ------ inclusion threshold ------
       0.36    6.3  69.8       0.18    7.3  25.3    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.82    5.1  65.8       0.35    6.3  20.7    2.0  2  TIGR02680 TIGR02680: TIGR02680 family protein


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8  39.4   8.3e-13   1.1e-09      59     324 ..      32     287 ..       8     293 .. 0.58
   2 ?   -5.1  77.0       2.2     3e+03      63     238 ..     311     500 ..     293     510 .. 0.64

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 8.3e-13
   TIGR02794  59 kkaakke...........pkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaak.kaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeak.KakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeaeakakakaeaerka....a.kqeaeladlaG.laeeknaekqgsgaagkavasev...dkyagaikqaiqqkllddpsak.gktctlriklapdG.tlls.vtkssGd 324
                 +++ak+e             p+++ +++++  ++ a+ea++k+++e++  +e   +r+++e+a + k e+a k+        ee k++++ Ea++kae+++      +++A++++ +e+k +++ ea++ aE  e ++++  e++ K +   e++a     kaK+ +e  ++A+  A++Ka+++++a++            + + + +l++++G + +++n  k     +++++  +v   +++++    +i  k++  +s+k g+   ++    p+G t  s v++ssG+
  MMETSP1061-20121228|1551_1  32 SPPAKSEapkfqlpkfggSSPPKKAPAPKSSTANLAAEAAAKRKKEAEARAEA--NRLKQEEANRkKIEAAEKA--------EELKRQRQLEAEQKAEQAR------QAAAERQRIQEQKQQEKLEAQRVAE--EKRQQQIDERRrKVELLREEQA----TKAKKLQE--ERAA--AAEKAQRQQAAQK-------PvgqvKtRRTISLGNIFGgSDTTENEVKVDVSTSKESAPPGVpvmSSWKQNPDGSISGKISGSSSFKeGQF--ITTSAVPQGaTSNSvVRTSSGS 287
                 33333334444666666666667777777777777777777777777655555..4444444444344444443........3555555555555555522......2345566666666666666666665..4555555555545555555555....23333332..2222..4556664444442.......223344478999*****658888877777666666666665566699***************99*985655..7778889997666656666665 PP

  == domain 2    score: -5.1 bits;  conditional E-value: 2.2
   TIGR02794  63 kkepkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEa.kakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeakKakaeaeaKakaeeakaKaeae.............................AkaKAeaeAkaKaeaeakakakaea 238
                 k+    + + + +qk+++++++ a+k+++a +ar k  e++raaa +aa   + +ak+ +    +a+eak++ a+Ea kaka+a+a ++++a++eA+++aEe++kakaaa+a++k+ a+eak++a++ + Kaka      +     aKa+ +                              ka A++ A +Ka  ++ a +ka+ 
  MMETSP1061-20121228|1551_1 311 KPV---TTSSPPQQKQVSKAPSPAEKAKEAAEARRKAAEEKRAAAVAAAE--DRKAKA-A----AAAEAKRQ-AEEArKAKAAAQA-EQRRAAAEAKRQAEEARKAKAAAQAEQKRAAAEAKRQAQQAR-KAKAPVSPAVE---QDAKAAGKprspfslfgrgsatspppppkqavkpapkVKAPAKKPAVKKAPPKRPAVKKATS 500
                 222...45667777888888889999999999998888777777777555..333332.2....45566655.4444255555544.356777779999999999999999888886556777777776.66655443332...23555444556666666666666666666666666557777777887777766666555554 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3  25.3   0.00013      0.18     357     492 ..      67     202 ..      54     240 .. 0.43
   2 ?    5.0  17.5   0.00064      0.88     687     784 ..     330     428 ..     302     450 .. 0.26

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00013
   TIGR02168 357 eaeleeaeaeleelesrleeleeel.eelrsevaeleeqlaslnaelerleaeleqleerre.rlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqar 492
                 +ae++++   ++e+e+r+e+ + +  e+ r+++ ++e+ ++  ++++ ++e++ eq+ +  + r++ + +++++kle+ + + ++ q++++e++++ e l+ee+++  ++l+e +++ +e+ q+ q+a++ + q++ r
  MMETSP1061-20121228|1551_1  67 AAEAAAK--RKKEAEARAEANRLKQeEANRKKIEAAEKAEELKRQRQLEAEQKAEQARQAAAeRQRIQEQKQQEKLEAQRVAEEKRQQQIDERRRKVELLREEQATKAKKLQEERAAAAEKAQRQQAAQKPVGQVKTR 202
                 2222221..122222222222211102222222222222222222222222222222222110111111222233344444445555555555555555555555555555555555555555555555555555544 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.00064
   TIGR02168 687 eieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleee.leeaeeelkeaee 784
                   e+++e++++ +k+++e + +  +++e+++ + +++ e++r+ +e++k  +++++e+++++++++++ +e  ++++  ++++++  +ea+ ++++a++
  MMETSP1061-20121228|1551_1 330 PAEKAKEAAEARRKAAEEKRAAAVAAAEDRKAKAAAAAEAKRQAEEARKAKAAAQAEQRRAAAEAKRQAEEARKAKAAAQAEQKRaAAEAKRQAQQARK 428
                 111111111111111111111111111111111111111111111111111111111111111111111111111111111111101111111111111 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3  20.7   0.00026      0.35     290     421 ..      66     197 ..      56     251 .. 0.57
   2 ?    4.9  19.3   0.00071      0.97     295     510 ..     331     428 ..     293     461 .. 0.40

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00026
   TIGR02680 290 delekareeereldarteale.aeaealrtrleaLqeseayqkakeleraraeaealqkaaaeaekavaeaesreeeerrrldeeaarleeaeeelraareelareAeraglseahtaeplaalaaqelqelg 421
                  ++e+a ++++e++ar ea + +++ea+r+++ea ++ e ++  ++le  ++  +a+q+aa++++ + +++++++e++r + + ++++++e  ++++  ree a +A++   + a  ae+ a ++++ ++++g
  MMETSP1061-20121228|1551_1  66 LAAEAAAKRKKEAEARAEANRlKQEEANRKKIEAAEKAEELKRQRQLEAEQKAEQARQAAAERQRIQEQKQQEKLEAQRVAEEKRQQQIDERRRKVELLREEQATKAKKLQEERAAAAEK-AQRQQAAQKPVG 197
                 334444444444444444333123455666666666666666666666555554444444444444444444445555555555566666666666666666666666544333333333.333333334443 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.00071
   TIGR02680 295 areeereldartealeaeaealrtrleaLqeseayqkakeleraraeaealqkaaaeaekavaeaesreeeerrrldeeaarleeaeeelraareelareAeraglseahtaeplaalaaqelqelgalaldarrqdadrviaerselvallrrrvdeadeaeaesaaaraardeldeeaeqaaaraeladeavdeeeavlaaadawqaqleelta 510
                 a+++++ ++ar++a+e+++ a+    e+ ++ +a+++a+   +a++ ++a+ +a ae+++a+aea++++ee+r++                                                                                                                    +a+++e+ ++aa    ++q++++++
  MMETSP1061-20121228|1551_1 331 AEKAKEAAEARRKAAEEKRAAAVAAAED-RKAKAAAAAEAKRQAEEARKAKAAAQAEQRRAAAEAKRQAEEARKA-------------------------------------------------------------------------------------------------------------------KAAAQAEQKRAAA--EAKRQAQQARK 428
                 2222222222222222222222111111.2222222222222333333333333333333333333333333333...................................................................................................................2222222222221..11111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       732  (0.17845); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        67  (0.0163335); expected 4.1 (0.001)
Passed Fwd filter:                        34  (0.00828864); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.10u 0.24s 00:00:01.34 Elapsed: 00:00:00.84
# Mc/sec: 892.50
//
Query:       MMETSP1061-20121228|1550_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-66  222.3   0.0      2e-66  221.8   0.0    1.1  1  TIGR00417 speE: spermidine synthase
     0.0032   13.8   0.0     0.0045   13.3   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
     0.0053   14.4   0.0      0.045   11.4   0.0    2.1  2  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.8   0.0   1.5e-69     2e-66      10     271 .]      77     355 ..      69     355 .. 0.90

  Alignments for each domain:
  == domain 1    score: 221.8 bits;  conditional E-value: 1.5e-69
   TIGR00417  10 valtlkvdkvLyeeksefqdvlifeteefGkvlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpklsgalddervdlkidDGvkflrdt.ekkfDviivDstdPv..G........paetlfekefyelvkkalnedGvivaqseslll..qlelikdlkrkvkev.fekvelylaaiPtypsgllsfivaskn..klsnleveeerik.eeaedlktkyynkeihkaafvlPkf 271
                 +a+ ++ ++ L+ ++se+q +++ +++ fGk+lvlDgv+q+terD   y+e++ahvp++ h npk+vlv+GGGDG vl+ev+kh sve+++ v++D +v++ + ky+p+   a++d+r +l+i+DG +f+rd  ++ +Dvii Ds+dP   G        p+  l+e+e+   + + l+++G++  q+es+ +  +le i   +++++   f++ ++       yp+g+++++++ kn  + sn++  ++r +   a++ kt yy++ + ++ f +P +
  MMETSP1061-20121228|1550_1  77 QAIEMAENSLLFAKQSEYQAIEVHQSRFFGKMLVLDGVIQLTERDADSYNEMMAHVPMFQHANPKRVLVVGGGDGYVLKEVLKHPSVEHVDHVDLDGEVVRTCEKYFPQWGDAWKDPRAHLHICDGARFIRDKpDHYYDVIIQDSSDPWiaGedgvmiplPSGVLYEEEHICEMYRVLKPNGILNIQAESFNVptSLEGIVTWRKTMEACgFQRSRYGNIHTVSYPTGQIGLLLGEKNpsASSNMSSVSKRYNqMVAKGAKTTYYHPPLQRGCFEVPLW 355
                 6899999****************************************************************************************************************************9967789**********5332333444446778***********************999876226778998999999999**************************97767777766666551467899****************988 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.3e-06    0.0045     275     359 ..     132     217 ..     118     219 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.3e-06
   TIGR04074 275 vaalresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrl.kldrlsekqrervellqssltYrDkrlkgfdaa 359
                 v + ++++ ++vl +G G+g +lk++l++ ++e++  vd+  + +++ ++ + ++ ++ +  r++++++ ++   rDk  + +d +
  MMETSP1061-20121228|1550_1 132 VPMFQHANPKRVLVVGGGDGYVLKEVLKHPSVEHVDHVDLDGEVVRTCEKYFpQWGDAWKDPRAHLHICDGARFIRDKPDHYYDVI 217
                 456788999********************************999999998875678888889999999999999999987777765 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   3.3e-05     0.045      21      77 ..     126     182 ..     122     226 .. 0.87
   2 ?    0.4   0.0     0.072        98     116     131 ..     246     261 ..     243     299 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.3e-05
   TIGR02072  21 kkLlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkk 77 
                 ++++++++  ++ +p++vL +G G G++ +++lk  + +++  +D+  e  ++++k 
  MMETSP1061-20121228|1550_1 126 NEMMAHVPMFQHANPKRVLVVGGGDGYVLKEVLKHPSVEHVDHVDLDGEVVRTCEKY 182
                 7899999999999*********************************99999888875 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.072
   TIGR02072 116 vlaelarvlkpgGlla 131
                  + e++rvlkp+G+l 
  MMETSP1061-20121228|1550_1 246 HICEMYRVLKPNGILN 261
                 5779*********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1658.11
//
Query:       MMETSP1061-20121228|1552_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1289.89
//
Query:       MMETSP1061-20121228|1549_1  [L=2187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.18s 00:00:01.01 Elapsed: 00:00:00.61
# Mc/sec: 4732.13
//
Query:       MMETSP1061-20121228|1555_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.10s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 1062.86
//
Query:       MMETSP1061-20121228|1554_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   21.9  14.6    0.00071   16.9  10.1    2.7  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9  10.1   1.7e-07   0.00071       1     262 [.     138     438 ..     138     440 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.7e-07
   TIGR00950   1 WGttgvvikelles.qlplyfavlrrlifallllLpllrlr................nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtll..........sdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvlliGallllpfalllgpnl..........qalp......atslqwlallyLgligtllayflynkglkevdasaasilalleplvallLgllilgetlslvqliggalilaa 262
                 W++ +  +k +++   ++++  +l r  +a++ l+p+ ++                  +l++l++ ++ g   ++  y+  +l   ++t++   ++ ++  ++v+l+          s  ++  ++ +k l+ av+a++G++++  +g     ++G  l+ +  i f +g ++  +++++++   l++++ + l+   + +++f+++ g +l           +lp        + +++ +ly gl+ t+la  + + +  ev+a  as++ + ep+ a+  g ++lget+  ++++g++li++a
  MMETSP1061-20121228|1554_1 138 WASNFAAAKLVMAEpGVDSSLYALSRFGVAAASLAPFAIRSvlrgnvdgesnvktpvMDLETLKESIVCGSWVAF-GYLGQTLGLLSTTASKSCVICSMHCVFVALIaevwrvqkaaSVGIGSTTFDVKRLVPAVVAVIGVAIVELKGAGGSPTIGDALSFAQPIGFGMGYLILENIMARKPEAALPVSA-MKLV--VVTVASFLMFEGSPLlhggsiadlsPQLPdfspilHSTTAMGGILYTGLVTTALALWVESIAFAEVPATDASLILTTEPIFAAGCGAIALGETFGASDYVGASLIVGA 438
                 999999999999998999999999999999999999999989999999999999998788888888888765443.44444555555555555555555555555551111111112566788899*****************************************************99977776664.2332..23333333333222111111110011222111122235578889***********888889999*****************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1823.85
//
Query:       MMETSP1061-20121228|1558_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-39  133.0   0.0    1.9e-39  132.7   0.0    1.0  1  TIGR01632 L11_bact: ribosomal protein L11


Domain annotation for each model (and alignments):
>> TIGR01632  L11_bact: ribosomal protein L11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.7   0.0   4.5e-43   1.9e-39       4     139 ..       4     144 ..       2     145 .. 0.92

  Alignments for each domain:
  == domain 1    score: 132.7 bits;  conditional E-value: 4.5e-43
   TIGR01632   4 kaiiklqveagkAkPsppvGpalgqkgvnimeFckefNartkd.lekgvvvpvvitvyeDksftfivktppvsvllkkaagvekgskkpkke..kvgkitlkqvreiAklKlsDlna..leleaavkiiaGtAksmGieve 139
                 ++ ++l v+a++AkP+p +G+alg  g+n+++FckefN+++ + +e+++++ v + + +D+sftf +++pp+++l+kkaag++kg +kp+      g +t + v++iA +K+ D n+  l le++++ ++GtA+s+Gi+v 
  MMETSP1061-20121228|1558_1   4 VRAVQLRVPAAAAKPGPAIGQALGPLGINMAQFCKEFNDKSGEiYEANTPLRVELRAMSDRSFTFSIRSPPTAWLVKKAAGIDKGPQKPNMYdaPSGYVTPEMVHKIALIKQGDDNTwhLPLEGIARQVVGTARSIGIKVA 144
                 5789***********************************99763799*******************************************87336799****************77611568*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 949.06
//
Query:       MMETSP1061-20121228|1556_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   12.6   6.4       0.84    7.9   0.6    2.5  2  TIGR03685 L21P_arch: 50S ribosomal protein L12P
       0.98    7.8   7.6       0.82    8.0   0.3    2.4  2  TIGR03894 chp_P_marinus_1: conserved hypothetical protein, TIGR03894 family


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.6   0.00041      0.84      56      93 ..      28      67 ..      21      77 .. 0.50
   2 ?    7.4   0.4   0.00057       1.2      69      92 ..     158     181 ..     130     189 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00041
   TIGR03685 56 kaaaapvaaaaaaaaaaeaaeeekeeee..eeeeekeeee 93
                ++a+ap++++aaa a+  ++  +++ ++    ++++++++
  MMETSP1061-20121228|1556_1 28 STAFAPAPSVAAANANRIRRFTAEKSNDnaSSDDNNNNNN 67
                5677777777777666554433333333112333222222 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00057
   TIGR03685  69 aaaaeaaeeekeeeeeeeeekeee 92 
                 +a+++++++e+e+++e+++e++++
  MMETSP1061-20121228|1556_1 158 SAEQQTKDDENENNDENDDENDND 181
                 333444444333333333333333 PP

>> TIGR03894  chp_P_marinus_1: conserved hypothetical protein, TIGR03894 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.0     0.014        29      57      88 ..      50      81 ..      39      87 .. 0.65
   2 ?    8.0   0.3    0.0004      0.82      52      82 ..     153     184 ..     127     195 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.014
   TIGR03894 57 aeqepddeenegeeketkeeseseseesregr 88
                ae+ +d++++++++++++++s+++ ++s++ +
  MMETSP1061-20121228|1556_1 50 AEKSNDNASSDDNNNNNNDSSNNNNNNSEDPP 81
                56666777776666666666666666666555 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0004
   TIGR03894  52 vvg.viaeqepddeenegeeketkeesesese 82 
                 vvg v aeq+ +d+ene++++++ e+++ +  
  MMETSP1061-20121228|1556_1 153 VVGrVSAEQQTKDDENENNDENDDENDNDDYA 184
                 45525678888888888877776666655543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 1069.11
//
Query:       MMETSP1061-20121228|1557_1  [L=766]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-12   43.6   0.7    0.00012   19.2   0.0    4.5  5  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family
    2.1e-11   41.4   0.0    3.8e-06   24.1   0.0    4.4  5  TIGR03548 mutarot_permut: cyclically-permuted mutatrotase family protein


Domain annotation for each model (and alignments):
>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     3e-07   0.00062      63     127 ..     100     163 ..      80     173 .. 0.80
   2 !   19.2   0.0   5.9e-08   0.00012      59     128 ..     150     217 ..     142     222 .. 0.82
   3 !    9.1   0.0   6.9e-05      0.14      55     129 ..     199     275 ..     197     280 .. 0.72
   4 !    3.9   0.0    0.0026       5.4      99     130 ..     316     347 ..     252     371 .. 0.57
   5 ?   -1.3   0.0       0.1   2.1e+02      53      99 ..     544     589 ..     515     637 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3e-07
   TIGR03547  63 dgklyvFgGvgkeesesslqvlddvykydpkknsWekletrsPvgl..lGasaveleegkililGGv 127
                 +++ly+FgG   +    + +vld+  +yd +k++W+++ t  P+      +s+v   +++++++GG 
  MMETSP1061-20121228|1557_1 100 KDHLYLFGGEYFD--GIENIVLDELLRYDVQKKEWKQILTPLPRPSprCAHSCV-SYKSSLYVFGGE 163
                 589******9888..677899*******************99874321455555.788999999995 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 5.9e-08
   TIGR03547  59 aavvdgklyvFgGvgkeesesslqvlddvykydpkknsWekletrsPvgllGasaveleegkililGGvn 128
                 ++  +  lyvFgG   +  + + + ++d +k+d ++ +W++++++ P +     ++ + ++ ++i+GG+ 
  MMETSP1061-20121228|1557_1 150 CVSYKSSLYVFGGELAN--SDQYHHYRDLWKFDLRTMTWTEIKAKNPPSARSGMGCLVWKHYMVIFGGFF 217
                 5667889******9887..677889******************998877766666668888899999975 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 6.9e-05
   TIGR03547  55 eqavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWekletr....sPvgllGasaveleegkililGGvnk 129
                 ++  + v + ++ +FgG  ++    +++ ++dv+++d ++++W+ + ++    +P   +    + + ++ki++ GG+ k
  MMETSP1061-20121228|1557_1 199 SGMGCLVWKHYMVIFGGFFEA--LRETKWYNDVHVFDLQTETWMDVPQSrlaiKPEPRSACNMAFFGNDKIVVHGGFSK 275
                 55667788889999***9988..778899**************998643111133333333333367889999998765 PP

  == domain 4    score: 3.9 bits;  conditional E-value: 0.0026
   TIGR03547  99 kletrsPvgllGasaveleegkililGGvnke 130
                  ++ +sP g +G s+++ +++++++ G v++e
  MMETSP1061-20121228|1557_1 316 SVSPNSPNGRAGMSSLSYKNRMLVFGGVVDHE 347
                 34456777777777776666555544444443 PP

  == domain 5    score: -1.3 bits;  conditional E-value: 0.1
   TIGR03547  53 areqavaavvdgklyvFgGvgkeesesslqvlddvykydp.kknsWek 99 
                 +r +a + + ++ +y+ gG+ +  +      ldd +  d  k+++We 
  MMETSP1061-20121228|1557_1 544 PRINACTLLHGNTMYLMGGILEVGD--REVTLDDMWALDLrKRDEWEC 589
                 4556666666777777777765532..223356666666413455655 PP

>> TIGR03548  mutarot_permut: cyclically-permuted mutatrotase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00014      0.29     171     203 ..     100     137 ..      60     144 .. 0.84
   2 !   24.1   0.0   1.8e-09   3.8e-06     125     234 ..     102     218 ..      98     223 .. 0.78
   3 !   20.7   0.0     2e-08   4.1e-05     126     249 ..     157     290 ..     156     313 .. 0.80
   4 ?    0.2   0.0     0.035        72     196     232 ..     308     343 ..     301     355 .. 0.74
   5 ?   -0.4   0.0     0.053   1.1e+02     160     193 ..     543     581 ..     512     599 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00014
   TIGR03548 171 knelYvfg.....ggdaeaytdgyayslkknkWekvaa 203
                 k++lY+fg     g ++++ ++ + y+++k++W+++ +
  MMETSP1061-20121228|1557_1 100 KDHLYLFGgeyfdGIENIVLDELLRYDVQKKEWKQILT 137
                 455*****99999999******************9865 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 1.8e-09
   TIGR03548 125 klyvalgn.angkp...snklyllnletkelee.lpdfPge.aRvqpvavalknelYvfg.....ggdaeaytdgyayslkknkWekvaavlsdeepisllGaasvklneskllviGGvnk 234
                 +ly+ +g+  +g++    ++l  +++++ke+++ l+ +P   +R    +v++k  lYvfg       + + y d ++++l++ +W++++a    ++p s   + +  +  + ++++GG+ +
  MMETSP1061-20121228|1557_1 102 HLYLFGGEyFDGIEnivLDELLRYDVQKKEWKQiLTPLPRPsPRCAHSCVSYKSSLYVFGgelanSDQYHHYRDLWKFDLRTMTWTEIKA----KNPPSARSGMGCLVWKHYMVIFGGFFE 218
                 677666652344443337889999*******99446789755******************7766445567899**************999....566666667777788899999999965 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 2e-08
   TIGR03548 126 lyvalgnangkp....snklyllnletkeleelp.dfPgeaRvqpvavalknelYvfg.....ggdaeaytdgyayslkknkWekvaa..vlsdeepisllGaasvklneskllviGGvnkkvfedAvkrleqlkd 249
                 lyv +g+  +++       l++++l t  ++e++   P +aR    +   k+ + +fg      ++ + y d+  ++l++++W  v +  + ++ ep+s    +   ++++k++v GG+ k   + A  + ++  d
  MMETSP1061-20121228|1557_1 157 LYVFGGELANSDqyhhYRDLWKFDLRTMTWTEIKaKNPPSARSGMGCLVWKHYMVIFGgffeaLRETKWYNDVHVFDLQTETWMDVPQsrLAIKPEPRSA--CNMAFFGNDKIVVHGGFSKVKTSTAAVETKTHTD 290
                 7888888777764544567899********9975268******9999999999*****78876689999*****************98667788888763..4555689**********99877777666665555 PP

  == domain 4    score: 0.2 bits;  conditional E-value: 0.035
   TIGR03548 196 nkWekvaavlsdeepisllGaasvklneskllviGGv 232
                 ++W + ++ +s + p    G +s++++ + +lv+GGv
  MMETSP1061-20121228|1557_1 308 ERWMSSTKSVSPNSPNGRAGMSSLSYK-NRMLVFGGV 343
                 567777777788888888888888886.567888886 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.053
   TIGR03548 160 eaRvqpvavalknelYvfg.....ggdaeaytdgyaysl 193
                  +R  + +    n +Y++g     g  +   +d +a +l
  MMETSP1061-20121228|1557_1 543 LPRINACTLLHGNTMYLMGgilevGDREVTLDDMWALDL 581
                 344444444444556666655554444444555566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       323  (0.0787421); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.18s 00:00:00.83 Elapsed: 00:00:00.85
# Mc/sec: 1189.45
//
Query:       MMETSP1061-20121228|1559_1  [L=741]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-11   38.9   1.7    0.00054   15.7   0.0    4.1  4  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    7.9e-08   30.0   2.7     0.0014   16.1   0.0    3.8  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0038   14.8   7.5       0.67    7.5   0.0    4.5  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     2e-06    0.0028     642     692 ..      78     128 ..      43     182 .. 0.56
   2 !    4.8   0.0   0.00081       1.1     581     662 ..     192     277 ..     188     310 .. 0.79
   3 !   15.7   0.0     4e-07   0.00054     464     561 ..     452     549 ..     424     557 .. 0.91
   4 ?    0.5   0.0     0.016        22     508     577 ..     566     638 ..     563     647 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2e-06
   TIGR02917 642 advyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkll 692
                 a+  +  k+ ++A+   ++aLe +p   e+ l+ aq+++ ++ l+ A ++l
  MMETSP1061-20121228|1559_1  78 AKLEEDHKEFERARSIFERALEVEPRSAELWLRYAQFEMRNEFLNHARNVL 128
                 333333333333333333333333333333333333333333333333332 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.00081
   TIGR02917 581 gelkkalaileeaadlapdspellellgraqlaakdlkkave....sfkkllelqpdsalalllladvyavaknkakAltslkkaL 662
                 g  ++a a+ + +++++p++++ ++    a  +ak+++ a+     s+ +l+ +++++a   ++ a + +++ ++ +A+  +k a+
  MMETSP1061-20121228|1559_1 192 GGHDRAEAVMRRYVNAYPSAKSFMKFAKWAEYEAKNVDLARTiweaSLSELEPEESKQARVFARFAVFEERQGEYGRARVIYKHAI 277
                 66789********************************999971111455566666778899999999************9999996 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 4e-07
   TIGR02917 464 naslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaae 561
                  a+++ + +   + +k+l  Ar+ +  A  + +++     +   ++++ ++id  ++ +++ l++ p+n +a  ++ael++  g++e   a+l  a++
  MMETSP1061-20121228|1559_1 452 FAKVWIYAAKLQIRRKNLTAARKLLGRAIGMCRGKERIFKEYIAIEMSLGEIDRCRALYNNYLRAMPQNCEAWSKYAELEKSLGESERCRAILALAIA 549
                 588999999999********************************************************************999**9999999888776 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.016
   TIGR02917 508 ldlqekniddAkqrfekvlaidpknlkallaLaelaark.gn.eeeavallekaaekdpke..lepalaLaqyy 577
                  +++e+++ +A+  +e++l  +  ++k+   +a+++a + g+   +a  +leka+++  +e   e +++L  + 
  MMETSP1061-20121228|1559_1 566 FEIEEGEASNARSLYERLLE-KTSHVKVWISYAQFEAGEiGEgMPKARTILEKAYNELREEglKEERVLLLDSW 638
                 57899999********9886.5689***********99875514567788999987644442245556665555 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     1e-06    0.0014     148     201 ..      84     137 ..      74     144 .. 0.92
   2 ?   -2.7   0.0      0.53   7.2e+02     186     223 ..     195     232 ..     190     244 .. 0.54
   3 ?   -1.0   0.0      0.16   2.2e+02      62      92 ..     247     277 ..     223     281 .. 0.85
   4 !   11.0   0.0   3.7e-05      0.05     144     220 ..     462     538 ..     451     549 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1e-06
   TIGR02521 148 agdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveq 201
                  +++e+a++ ++ral+++p+++e  l  a+ ++ +  + +Ar++l+r  q+++ 
  MMETSP1061-20121228|1559_1  84 HKEFERARSIFERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRSVQLLPR 137
                 6789*******************************************9998765 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.53
   TIGR02521 186 aeAralleryqqtveqtaesLwLgiriakalgdaaaak 223
                  +A+a++ ry + ++ ++  ++ +   +  + +++ a+
  MMETSP1061-20121228|1559_1 195 DRAEAVMRRYVNAYPSAKSFMKFAKWAEYEAKNVDLAR 232
                 45666666666666666665555555555555555443 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.16
   TIGR02521  62 pkdadanlalAlyyqqlgelekAeesfrkAl 92 
                 +k+a++ +  A+  +++ge ++A   +++A+
  MMETSP1061-20121228|1559_1 247 SKQARVFARFAVFEERQGEYGRARVIYKHAI 277
                 5778888889999999999999999999997 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 3.7e-05
   TIGR02521 144 calkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaa 220
                  + + ++   a+k l ra+ + +++ + ++e   ++++ g++ + ral++ y + ++q+ e+    ++++k lg+ +
  MMETSP1061-20121228|1559_1 462 LQIRRKNLTAARKLLGRAIGMCRGKERIFKEYIAIEMSLGEIDRCRALYNNYLRAMPQNCEAWSKYAELEKSLGESE 538
                 567889999*************************************************9999888888888887765 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00049      0.67      63     115 ..      82     134 ..      69     179 .. 0.76
   2 !    3.7   0.0    0.0074        10      27      82 ..     221     280 ..     214     301 .. 0.77
   3 ?   -4.0   0.1       1.7   2.4e+03      48      71 ..     357     380 ..     357     382 .. 0.80
   4 !    3.7   0.0    0.0073        10      66     120 ..     428     487 ..     424     500 .. 0.76
   5 ?    0.4   0.1     0.078   1.1e+02      63     114 ..     498     549 ..     494     555 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00049
   TIGR02552  63 qalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaiei 115
                    ke+e+A+ ++++a+ +++ +++  ++ a+  +  +  + A++ L++ +++
  MMETSP1061-20121228|1559_1  82 EDHKEFERARSIFERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRSVQL 134
                 55677777777777777777777777777777777777777777777766654 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0074
   TIGR02552  27 nlyqqgkyeeAeklFql.Laaldpte...akywlgLaaclqalkeyeeAiaaYalaaald 82 
                 ++y++++++ A+++ ++ L  l+p e   a+ +++ a+   +++ey +A+ +Y++a  l 
  MMETSP1061-20121228|1559_1 221 AEYEAKNVDLARTIWEAsLSELEPEEskqARVFARFAVFEERQGEYGRARVIYKHAIILL 280
                 5677788888888876446667665511156788999999***************99875 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 1.7
   TIGR02552  48 dpteakywlgLaaclqalkeyeeA 71 
                 dp++++ w+  a     ++ +++A
  MMETSP1061-20121228|1559_1 357 DPYDYDAWFEFAKLEEDAHAHAHA 380
                 789999999999888887777776 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.0073
   TIGR02552  66 keyeeAiaaYalaaaldlddprpvy.....haaecllalgekeeAlkaLklaieiaeeke 120
                 k+ e+A ++Y+ ++   + + ++ +     +aa+  +  ++   A+k L +ai +++ ke
  MMETSP1061-20121228|1559_1 428 KDLERASEIYQTCLDRVIPHKQFSFakvwiYAAKLQIRRKNLTAARKLLGRAIGMCRGKE 487
                 77899999999999988877777663333367777777888999************9665 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.078
   TIGR02552  63 qalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaie 114
                 + l+e ++ +a Y   + + +++ ++  + ae    lge e+ ++ L+lai+
  MMETSP1061-20121228|1559_1 498 MSLGEIDRCRALYNNYLRAMPQNCEAWSKYAELEKSLGESERCRAILALAIA 549
                 67888899999999999999999999999**********9999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.49
# Mc/sec: 1996.00
//
Query:       MMETSP1061-20121228|1560_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 845.93
//
Query:       MMETSP1061-20121228|1562_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1460.98
//
Query:       MMETSP1061-20121228|1565_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35    6.9   5.9        0.4    6.7   4.1    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
       0.81    6.8   8.5       0.88    6.7   5.9    1.0  1  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1
        9.4    2.3  11.1         11    2.1   7.7    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.1    0.0003       0.4     157     222 ..      14      79 ..       7      85 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0003
   TIGR00934 157 ereledrtetkvrtrtqvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsades 222
                 e+e ed++e++   r  vs+ ++++++++ qe+l  G l ++ ++d v   ++s++++++ +++e+
  MMETSP1061-20121228|1565_1  14 EEEEEDSNEEEEDHRNSVSTDEEESRENQEQEQLTYGALIEQHDDDAVAVAEDSKQSNNNNKKQEQ 79 
                 566677777777788779999999999999********9999999999988888888888777775 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.9   0.00064      0.88     146     216 ..      12      82 ..       7      86 .] 0.71

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00064
   TIGR00570 146 eleealelekeeeekkrlllqkleeeekkkkkkdkqalldeLetsdldvaeliaehkeksvklekeveklk 216
                 +lee  e  +eeee++r  + + eee++ ++++++      +e+ d d+  + ++ k+  ++ +k++++l+
  MMETSP1061-20121228|1565_1  12 ALEEEEEDSNEEEEDHRNSVSTDEEESRENQEQEQLTYGALIEQHDDDAVAVAEDSKQSNNNNKKQEQQLP 82 
                 699999999************99999999988876655554555555555555555555555666666655 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   7.7    0.0078        11     317     375 ..      15      78 ..       4      85 .. 0.28

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0078
   TIGR02442 317 eeqekeekkleekkeeakpdeekedeseekekeeskkqe...eeepgk.....ddekeedekeeaee 375
                 ee+e++++++e++ ++ ++dee+     e++++e+ + +   e+++++     +d+k+++++++++e
  MMETSP1061-20121228|1565_1  15 EEEEDSNEEEEDHRNSVSTDEEESR---ENQEQEQLTYGaliEQHDDDavavaEDSKQSNNNNKKQE 78 
                 2211111111111111112222222...222222222223322222221222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 391.42
//
Query:       MMETSP1061-20121228|1561_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-92  305.5   0.5    8.1e-79  262.8   0.2    2.1  2  TIGR02749 prenyl_cyano: solanesyl diphosphate synthase
    3.2e-55  185.3   0.4    6.6e-51  171.1   0.2    2.1  2  TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II


Domain annotation for each model (and alignments):
>> TIGR02749  prenyl_cyano: solanesyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   1.3e-14   2.7e-11       7      62 ..     156     212 ..     150     221 .. 0.90
   2 !  262.8   0.2   3.9e-82   8.1e-79      66     320 ..     273     530 ..     253     532 .] 0.95

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 1.3e-14
   TIGR02749   7 lapvekdlealtknlkslvGakhPilsaaaehlfea.gGkrlrPaivllvsrataee 62 
                 +++vek+l+ +++ +k+lv +++Pils aa+h+fe   Gkr+rP+iv l+++a+a+ 
  MMETSP1061-20121228|1561_1 156 FKMVEKELQPFSDSIKELVSTDQPILSMAAKHFFEKrHGKRFRPTIVQLMAKAVAAA 212
                 899*******************************8637***************9875 PP

  == domain 2    score: 262.8 bits;  conditional E-value: 3.9e-82
   TIGR02749  66 tarhrrlaeitelihtaslvhddvvdesdvrrgvetvhslfdtrvavlaGdflfaqaswylanlenlevvkllskvikdfaeGeikqglnrfdsdlsledyleksyyktaslvaasskaaavls..evdsevaedlyeyGkhlGlafqvvddildftgsteklGkPaasdlkkGnltaPvlfaleeepklselierefsekkdlekalelvkesk.aikkarelakekaqlalkslevlpksaskealkelvefvler 320
                   ++ +l++i+e+ih asl+hddv+de+d+rrg e+vh+l+ ++vavlaGd+l+a+as  la+len  vv+++++ ++ +  Gei q  +  +s l++e+yl ksyyktasl+  +++++a+l      s+va +  e+G h+Gla+q+ ddildft++   lGkPa +d+  G  taP+l+a +e p+l+ ++ r+f++k+d ekale + +s+ a++ka+ la+ +aq+a+++l  lp++ +++al  l++ v++r
  MMETSP1061-20121228|1561_1 273 WRKQAQLGQIVEMIHVASLIHDDVLDEADTRRGGEAVHKLYSNKVAVLAGDYLLARASVLLARLENTAVVQIMATALESLVAGEIMQLKAPPESLLEMESYLRKSYYKTASLICYACRSTALLGghAYGSTVATACEEFGFHMGLAYQIQDDILDFTAAASVLGKPALADMDLGLSTAPILYAAQEFPELRPMVMRRFKKKGDKEKALEALYSSDvAMDKAKALANFHAQRAIDALTRLPQTEARDALVRLTHTVVTR 530
                 567889*********************************************************************************************************************72245789*****************************************************************************977666439**************************************998 PP

>> TIGR02748  GerC3_HepT: heptaprenyl diphosphate synthase component II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   7.2e-06     0.015       6      57 ..     156     208 ..     151     218 .. 0.85
   2 !  171.1   0.2   3.2e-54   6.6e-51      71     318 ..     282     531 ..     268     532 .] 0.90

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7.2e-06
   TIGR02748   6 ysflkedieviekelekavqaeaevlkeaalellk.aGGkrirPvfvllagkl 57 
                 +++++++++     +++ v++++++l+ aa ++++   Gkr rP +v l +k 
  MMETSP1061-20121228|1561_1 156 FKMVEKELQPFSDSIKELVSTDQPILSMAAKHFFEkRHGKRFRPTIVQLMAKA 208
                 678889999999999*****************996268*********998874 PP

  == domain 2    score: 171.1 bits;  conditional E-value: 3.2e-54
   TIGR02748  71 alelihmaslvhddviddaelrrGketikskwdnriamytGdyllaksletiteiedprvhkilsktivevclGeieqikdkynfdqnlrtylrrikrktalliaascqlGaivagad..eeivkklyyfgyyvGmsyqiiddildfvgteeelGkPaGedllqGnvtlPvlyaledea.lkkklekvleettaeeleelieevkksd.aiekalavsdlylkkalelldelPkseakkalkeiakyigkrk 318
                  +e+ih+asl+hddv+d+a+ rrG e+++  ++n++a+ +Gdylla++   ++++e+++v +i+++++  +  Gei q+k   +   ++ +ylr+   kta li  +c+  a+ +g    ++   +   fg+++G++yqi ddildf+++   lGkPa  d+  G  t P+lya ++   l+  + + ++++   + e+ +e++ +sd a++ka+a+++ + ++a+++l++lP++ea+ al  +++ +  rk
  MMETSP1061-20121228|1561_1 282 IVEMIHVASLIHDDVLDEADTRRGGEAVHKLYSNKVAVLAGDYLLARASVLLARLENTAVVQIMATALESLVAGEIMQLKAPPESLLEMESYLRKSYYKTASLICYACRSTALLGGHAygSTVATACEEFGFHMGLAYQIQDDILDFTAAASVLGKPALADMDLGLSTAPILYAAQEFPeLRPMVMRRFKKKG--DKEKALEALYSSDvAMDKAKALANFHAQRAIDALTRLPQTEARDALVRLTHTVVTRK 531
                 58****************************************************************************************************************998622455677889*********************************************9886547777766666553..4456678887776589******************************99998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 2265.10
//
Query:       MMETSP1061-20121228|1567_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 718.61
//
Query:       MMETSP1061-20121228|1566_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-09   34.1   0.2    5.6e-09   34.1   0.1    2.2  1  TIGR00307 S8e: ribosomal protein S8.e


Domain annotation for each model (and alignments):
>> TIGR00307  S8e: ribosomal protein S8.e
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   1.4e-12   5.6e-09      57     125 ..     176     259 ..     171     260 .] 0.97

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.4e-12
   TIGR00307  57 lrietanvsdaeeGkvkkvriagvvenpannelvrrnvltkaaiveidig...............karvtsrPgqdGvvdgvll 125
                 lr+++anv+++e  ++ +  i gv +np+ + +    v+tk++i+e++++               +a+vt+ P  dG v++vll
  MMETSP1061-20121228|1566_1 176 LRMKRANVTHPELKTTFQLDILGVKKNPSSQIYTNLGVMTKGTIIEVNVSelglvttsgkvawgkMAQVTNNPELDGCVNAVLL 259
                 7899******************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1559.87
//
Query:       MMETSP1061-20121228|1563_1  [L=739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 2438.50
//
Query:       MMETSP1061-20121228|1564_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-43  145.1   0.0    4.2e-43  144.8   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    4.2e-06   23.8   0.3    2.6e-05   21.2   0.2    1.9  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00042   17.1   0.1     0.0011   15.7   0.1    1.6  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    0.00084   16.3   0.3     0.0031   14.4   0.2    1.7  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0009   16.1   0.3     0.0077   13.0   0.2    1.9  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0024   16.0   0.0     0.0074   14.4   0.0    1.7  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0058   13.5   0.0       0.37    7.6   0.0    2.2  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
  ------ inclusion threshold ------
      0.017   12.7   0.1        0.4    8.2   0.0    2.5  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.025   11.9   0.1      0.079   10.3   0.0    1.7  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.8   0.0   9.2e-46   4.2e-43       2     162 ..      11     169 ..      10     171 .. 0.97

  Alignments for each domain:
  == domain 1    score: 144.8 bits;  conditional E-value: 9.2e-46
   TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklv 162
                 + +kiv++G+++vGKs+Ll+++++n+ ++ esk++++ +++t++i+ +Gkt+k++++DTaGqe+++ai+++y+r + + l v+di+ +  ++e+++ ++ ke++++a+ ++++++lv+nK Dl++  +++t+++  f++  + ++ie+sa + +++d++f+ +
  MMETSP1061-20121228|1564_1  11 YLFKIVLIGDSGVGKSNLLSRFTRNE-FNLESKSTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKH-GTFENVE-RWLKELRDHAE-ANIVVMLVGNKSDLRHlrAVETDEAMSFSEQHNLAFIETSALDASGVDTAFQRI 169
                 568***********************.*************************************************************.8888888.***********.**************************************************9866 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.2   5.8e-08   2.6e-05     175     349 ..      12     177 ..       2     189 .. 0.52

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5.8e-08
   TIGR03594 175 pikiaiiGrpNvGKStLvNallgeervivsd.iaGtTrDsidievevkgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDateg..iseqDlkiaglil..eegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaik.evyesl 349
                  +ki +iG   vGKS L+ +++++e  + s+ + G+   + +i+ e k  k ++ DTAG  r + ++++  +            a  +llv D++++  +++ +  + +l    e++  +++v NK Dl     +l++++++   +++  +   ++ +SAl+ +gv++ ++ i  e+y+ +
  MMETSP1061-20121228|1564_1  12 LFKIVLIGDSGVGKSNLLSRFTRNEFNLESKsTIGVEFATKSIQAEGKTIKAQIWDTAGQERYRAITSAYYR-----------GAVGALLVYDISKHgtFENVERWLKELRDhaEANIVVMLVGNKSDLR----HLRAVETDEAMSFSEQHNLAFIETSALDASGVDTAFQRILtEIYRLM 177
                 567777777777777777777777665544314455555555555555556667777777666666533222...........22224555555432113333333333332002233334455777776....55555555555566666666666677777777777766642344433 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   2.4e-06    0.0011       9     172 ..      14     178 ..       8     191 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.4e-06
   TIGR03918   9 hialfGrrNaGKSsliNaltgqdvaivsdvp.GtTtDpvekamEll.plGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelk...ekkipvivvlnkidlkeeeke....keklekkkeeevvlvsakekegieelkealiellpeeae 172
                 +i+l+G   +GKS l+  +t+++  + s+   G   +  +k++    +     + DTaG +   ++ +  ++ +  +l   d+      ++ ++ e  e++l+el+   e +i v++v nk+dl + ++     + + +++++  ++ +sa + +g+++  +++++++ + ++
  MMETSP1061-20121228|1564_1  14 KIVLIGDSGVGKSNLLSRFTRNEFNLESKSTiGV--EFATKSIQAEgKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIS-----KH-GTFENVERWLKELRdhaEANIVVMLVGNKSDLRHLRAVetdeAMSFSEQHNLAFIETSALDASGVDTAFQRILTEIYRLMS 178
                 799***********************99754144..344444433312335689999997766666665555555554444432.....22.233333445555541115678888999****9876544333366677888889999********99988888877765554 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   6.9e-06    0.0031     209     330 ..      12     136 ..       4     186 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6.9e-06
   TIGR00450 209 glklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilv..kllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd.....eliitlkkkkkdlllvlNKiDLa.....e 330
                  +k++++G+  vGKS Ll  + +++  + s+      +   ++++ eG ++  ++ DtAG  e   ++  +  + +  a     l  +v D+sk  t ++     + + +   ++  ++lv NK DL      e
  MMETSP1061-20121228|1564_1  12 LFKIVLIGDSGVGKSNLLSRFTRNEFNLESKST-IGVEFATKSIQAEGKTIkaQIWDTAGQ-ERYRAITSAYYRGAVGA-----L--LVYDISKHGTFENverwlKELRDHAEANIVVMLVGNKSDLRhlravE 136
                 58***********************99988643.2345667788888866522799***94.33444443333333322.....3..33333333222221111134455555566666777888887544442 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   1.7e-05    0.0077     187     347 ..      10     169 ..       2     173 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.7e-05
   TIGR03156 187 sevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeee.evlltDTVGFirkLPheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkle......eeeleeleekkeeavlvsAkkgegleeLleai 347
                 + ++++ l+G    GKs ll ++t++e   e k     +  t+ ++ + ++ ++ + DT G      + + +a+       + a   l v D+s++ + e++e   + L++   ++i v+lv Nk d+ +      +e+++ +e+++ + +  sA + +g+++  ++i
  MMETSP1061-20121228|1564_1  10 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIQAEGKTiKAQIWDTAGQE--RYRAITSAY----Y--RGAVGALLVYDISKHGTFENVERWLKELRDHAEANIVVMLVGNKSDLRHlravetDEAMSFSEQHNLAFIETSALDASGVDTAFQRI 169
                 557899999999999999999999999999999999999999999998875489999999943..233333333....2..3333446699***99988877777777777677778888999****99955555444455555555668899999999998877666 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.6e-05    0.0074       2      54 ..      14      68 ..      13      74 .. 0.87
   2 ?   -1.4   0.0       1.2   5.6e+02      60      78 ..     113     131 ..      90     169 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.6e-05
   TIGR02528  2 rimliGsvgcGkttLtqaLkgee..ikykktqaveykdkaiDtPGeylenrryYs 54
                +i+liG +g Gk  L  + + +e  ++ k t  ve+  k i   G  ++ + + +
  MMETSP1061-20121228|1564_1 14 KIVLIGDSGVGKSNLLSRFTRNEfnLESKSTIGVEFATKSIQAEGKTIKAQIWDT 68
                89**************99977652267899*************999998888765 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.2
   TIGR02528  60 aadadvivlvqsatdeesl 78 
                  a+a+++v++ + +++  +
  MMETSP1061-20121228|1564_1 113 HAEANIVVMLVGNKSDLRH 131
                 4556666655555444433 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.013       5.8     154     180 ..       9      35 ..       2      41 .. 0.84
   2 !    7.6   0.0   0.00081      0.37     251     326 ..      97     171 ..      86     174 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.013
   TIGR02729 154 LklladvglvGlpnaGkStllsavsaa 180
                   +l  + l+G + +GkS lls++++ 
  MMETSP1061-20121228|1564_1   9 YDYLFKIVLIGDSGVGKSNLLSRFTRN 35 
                 56777899**************99875 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00081
   TIGR02729 251 kdpvedleviekeLkkyseeLaekpelvvlnkidlleeeele.ellkelkeelekkvlaisaltkegleellkklle 326
                 + ++e++e   keL+ + e  a+   ++v nk dl + + +e + + +++e+++  ++++sal+ +g+++  +++l+
  MMETSP1061-20121228|1564_1  97 HGTFENVERWLKELRDHAE--ANIVVMLVGNKSDLRHLRAVEtDEAMSFSEQHNLAFIETSALDASGVDTAFQRILT 171
                 3677888888888988888..67788999******9985554156677888889***************99998876 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00089       0.4      18      42 ..      12      36 ..       3      46 .. 0.84
   2 ?    1.7   0.0     0.082        37     126     184 ..     114     168 ..      72     170 .. 0.60
   3 ?   -2.7   0.0       1.8   8.4e+02     138     160 ..     208     230 ..     205     239 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00089
   TIGR03598 18 lpeiafaGrSNvGKSsliNaLtnrk 42
                l +i+++G S vGKS l+  +t+++
  MMETSP1061-20121228|1564_1 12 LFKIVLIGDSGVGKSNLLSRFTRNE 36
                6789**************9999875 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.082
   TIGR03598 126 keakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelkae 184
                 +ea+i v++v +K+D  + +++++  ++  +   ++ ++  ++ +S+l+  g++++ ++
  MMETSP1061-20121228|1564_1 114 AEANIVVMLVGNKSDLRHLRAVETDEAMSFS---EQ-HNLAFIETSALDASGVDTAFQR 168
                 3446667777788886555555444333322...22.3457888888888888877665 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1.8
   TIGR03598 138 KaDklkkselkkalkkvkkelkk 160
                  aDk k+++++k+l++v+  ++ 
  MMETSP1061-20121228|1564_1 208 NADKEKRGAAAKNLETVEFCATR 230
                 57888888888888887655444 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00017     0.079     126     143 ..      16      33 ..       7      71 .. 0.84
   2 ?   -1.2   0.0      0.56   2.5e+02      67     116 ..     115     165 ..     103     177 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00017
   TIGR00157 126 vfaGqSGVGKSSLiNlld 143
                 v++G SGVGKS L+ + +
  MMETSP1061-20121228|1564_1  16 VLIGDSGVGKSNLLSRFT 33 
                 79***********98764 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.56
   TIGR00157  67 akniepiivlnkkdlleeedae.keqleelknlgYkvllvsvkneegleel 116
                 ++ni  ++v nk dl +   +e +e ++  ++ + + + +s+ ++ g+++ 
  MMETSP1061-20121228|1564_1 115 EANIVVMLVGNKSDLRHLRAVEtDEAMSFSEQHNLAFIETSALDASGVDTA 165
                 567888899999999998888866677777788888888888887777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      217  (0.052901); expected 82.0 (0.02)
Passed Vit filter:                        52  (0.0126767); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 1102.75
//
Query:       MMETSP1061-20121228|1568_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 2115.83
//
Query:       MMETSP1061-20121228|1569_1  [L=741]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0092   11.6   0.0      0.013   11.1   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   3.2e-06     0.013     340     438 ..     581     685 ..     572     692 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.2e-06
   TIGR03903 340 LGdtlLfyfGypsaierdarraaRaalelvrsagrkaeeaageekwrveiaaaihvGsvlaeashasg......gstadvalrlqalaepGqilvseaarklLrr 438
                 +Gd  +    + ++  +  +r a  a + +++a r+  + +  +   v+i+ ++h G v+++  +         g t + a+r++  ++   i  se +++lLr+
  MMETSP1061-20121228|1569_1 581 IGDAYMAVTNLTKEQPDHCKRIAEFAIDTIQNARRTLVDEDNPSMGFVNIRVGLHSGPVVSNVVGTRNpryclfGDTVNTASRMESNSQKNMIHCSEISANLLRE 685
                 6777777777777888899999***********9998777777777899999*********9888776799999**************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 2328.66
//
Query:       MMETSP1061-20121228|1570_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-190  631.4   0.0   2.3e-190  631.2   0.0    1.0  1  TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
    1.2e-62  209.7   0.1    3.1e-56  188.6   0.1    2.0  2  TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
    2.1e-11   41.4   0.6    6.6e-11   39.8   0.2    2.0  3  TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
    4.3e-10   37.2   0.1      7e-10   36.5   0.0    1.3  1  TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase
  ------ inclusion threshold ------
      0.015   13.5   0.0      0.034   12.3   0.0    1.5  1  TIGR02695 azurin: azurin


Domain annotation for each model (and alignments):
>> TIGR00873  gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  631.2   0.0  2.8e-193  2.3e-190       1     466 [.       4     471 ..       4     472 .. 0.98

  Alignments for each domain:
  == domain 1    score: 631.2 bits;  conditional E-value: 2.8e-193
   TIGR00873   1 diGliGlavmGknlvlniadkGfsvavynrtkektdellkeeakgkk..lvgaesieefvkslekPrkilllvkaGaavdavieellpllekgdiiidGGnslykdterrekelkekgilfvGvGvsGGeeGarkGPslmpGGskeayelvepilqkiaakvegepcceyiGedGaGhyvkmvhnGieygdmqliaeayellkealklsaeeiaevfeeWnegeldsylieitadilkkkdedGk..plvdkildaagqkGtGkWtaidaldlGvPvtlitesvfarvlsslkeervaaskllsgplaeekaedkeefiedvrealyaskivsyaqGfallkeaskeygwdlnlgeialiwrgGciirskfldkikkafeenpelenlllaeyfkdalkkaqkglrkvvakaielgipvPalsaalsfydgyrtarlpanllqaqrdyfGahtyertdkprgeffhteWl 466
                 diGl+GlavmG+n++ln+a++Gf+vav nr+++k+d+ ++ ++++ +  l+g ++i++f+++l  Prk+++lv aG++vda+i++l ++le+gd+iidGGn +++++ rr +elk kgi+f+G+G+sGGeeGarkGPslmpGG  eay+l+epil+k aa+v+ge+c+ y G+ GaG yvkmvhnGieygdmqli+e+y++lk+++++s+ee++++f+eWn++eldsylieit+ il kkd++G+  ++vd++ld++g kGtG+Wt+++a ++ v   +i++++ ar+ls+ k+ervaask l+gp+  + ++dk++ +ed++ aly+ski syaqG+a +k+as++ gw+++lg  a++wrgGciir+k+l+ i +a   +++l+nl++++ f+ +l+++q+++r+vv+ ai +g++vP+ +a+l++yd yr+arlpanl+q+qrd+fG htyertd+p+  +fht W 
  MMETSP1061-20121228|1570_1   4 DIGLYGLAVMGQNFALNMAEHGFKVAVCNRSPSKVDTTVARAKEEGDlpLEGHKEIKDFIAALAVPRKVVILVMAGKPVDATIAALCEYLEPGDVIIDGGNEWFPNSVRRSEELKPKGIHFIGMGISGGEEGARKGPSLMPGGPIEAYKLIEPILTKCAAQVDGEACTGYCGPIGAGNYVKMVHNGIEYGDMQLIGECYDILKSVVGMSNEEMHKLFTEWNKTELDSYLIEITSIILGKKDDQGEegEVVDYVLDKTGMKGTGRWTVQEAAEQSVAAPTIAAALDARYLSGRKDERVAASKILEGPSPSQISVDKDQILEDLQAALYCSKISSYAQGLATIKAASDKNGWNVDLGLCARMWRGGCIIRAKLLKGIAEAVGRDQNLANLMVDPGFAAELNSRQNAWRRVVTLAIANGVAVPSTAASLAYYDQYRRARLPANLIQSQRDFFGGHTYERTDRPG--VFHTLWD 471
                 79*************************************998887762369************************************************************************************************************************************************************************************************97346*********************************************************************************************************************************************************************************************************************..******5 PP

>> TIGR00872  gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.6   0.1   3.8e-59   3.1e-56       3     277 ..       5     298 ..       1     307 [. 0.84
   2 !   19.2   0.0   1.5e-07   0.00012     184     298 ..     336     460 ..     329     461 .. 0.79

  Alignments for each domain:
  == domain 1    score: 188.6 bits;  conditional E-value: 3.8e-59
   TIGR00872   3 lgliGlGrmGaniakrlakrghevvgydrdqdave....elkedra...egvanlkellkrlsaprvvwvmvpag.ivdavleelapllekGdividgGnsyykdslrrekelkekgihlldvGtsGGvlGkerGyclmiGGdeeafkkaeplfkdvaveekGyl...ylGeaGsGhfvkmvhnGieyGlmaalaeGlevlkns..qfdfdleevarvyrrGsvirsflldltakaleesadl...eeveGrved....sGeGrwtvkaavdlgvpapvlatslqerfasrekdd 277
                 +gl Gl  mG n a ++a+ g++v + +r+++ v+    ++ke++    eg  ++k+++  l  pr v ++v ag  vda +  l ++le Gd++idgGn ++ +s+rr +elk kgih++ +G+sGG +G+++G +lm GG  ea+k  ep++ + a + +G +   y+G+ G+G +vkmvhnGieyG m+ ++e +++lk      + +++++   +++   + s+l+++t + l ++ d     ev  +v d     G Grwtv++a ++ v+ap +a +l  r+ s  kd+
  MMETSP1061-20121228|1570_1   5 IGLYGLAVMGQNFALNMAEHGFKVAVCNRSPSKVDttvaRAKEEGDlplEGHKEIKDFIAALAVPRKVVILVMAGkPVDATIAALCEYLEPGDVIIDGGNEWFPNSVRRSEELKPKGIHFIGMGISGGEEGARKGPSLMPGGPIEAYKLIEPILTKCAAQVDGEActgYCGPIGAGNYVKMVHNGIEYGDMQLIGECYDILKSVvgMSNEEMHKLFTEWNKT-ELDSYLIEITSIILGKKDDQgeeGEVVDYVLDktgmKGTGRWTVQEAAEQSVAAPTIAAALDARYLSGRKDE 298
                 89************************9998765551111555544322367788999******************89******************************************************************************999987776544499*******************************975334455666666667765.579**********97766541114566666553333589**************************9988885 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.5e-07
   TIGR00872 184 alaeGlevlkns....qfdfdleevarvyrrGsvirsflldltakaleesadleeve...Grve..dsGeGrw..tvkaavdlgvpapvlatslqerfasrekddfankvlaalrkefGghaekkk 298
                 + a+Gl  +k +     ++ dl   ar++r G +ir+ ll  +a a+  + +l+++    G     +s +  w  +v+ a+  gv++p  a sl   +    +  +    +   r  fGgh+ ++ 
  MMETSP1061-20121228|1570_1 336 SYAQGLATIKAAsdknGWNVDLGLCARMWRGGCIIRAKLLKGIAEAVGRDQNLANLMvdpGFAAelNSRQNAWrrVVTLAIANGVAVPSTAASLAY-YDQYRRARLPANLIQSQRDFFGGHTYERT 460
                 66778887776656657999*********************************99753345443124666666437899************99975.66666677778889999*******98765 PP

>> TIGR01505  tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.2     8e-14   6.6e-11       2     172 ..       5     187 ..       4     210 .. 0.77
   2 ?   -3.1   0.0      0.96   7.9e+02     159     189 ..     260     292 ..     254     320 .. 0.71
   3 ?   -3.1   0.0      0.91   7.5e+02     223     259 ..     390     428 ..     378     435 .. 0.70

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 8e-14
   TIGR01505   2 vgfiGlGimGkPmsknllkaGyqlvvatleqealdellaaGaesaet.akevvedadvivtm.vPdsPqveevalGe......nGileaakkGkvlvdmssiaPleskelakavkekGidvldaPvsGGeagaiegtlsimvGGdkavfdkvkpllealgksi......vlvGenGaGqtvkvan 172
                 +g  Gl +mG+  + n++  G+++ v ++ + ++d  +a   e  +   +   e  d i  + vP    v  v+ G+        + e   +G v++d       +s++ ++++k kGi+++   +sGGe ga++g  s+m GG    ++ ++p+l   + ++       ++G++GaG+ vk+  
  MMETSP1061-20121228|1570_1   5 IGLYGLAVMGQNFALNMAEHGFKVAVCNRSPSKVDTTVARAKEEGDLpLEGHKEIKDFIAALaVPRK-VVILVMAGKpvdatiAALCEYLEPGDVIIDGGNEWFPNSVRRSEELKPKGIHFIGMGISGGEEGARKGP-SLMPGGPIEAYKLIEPILTKCAAQVdgeactGYCGPIGAGNYVKMVH 187
                 6889*******************************99997666544312333333454443313332.333333333121111346677889*******9999889999**************************96.9*****************998877633333348**********9865 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.96
   TIGR01505 159 vGenGaGq..tvkvanqvivalnieavsealvl 189
                 +G +G+G+  +  +a+q + a  i+a  +a  l
  MMETSP1061-20121228|1570_1 260 TGMKGTGRwtVQEAAEQSVAAPTIAAALDARYL 292
                 677777753255688888888888888777555 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.91
   TIGR01505 223 drdfkPGfridlhqkdla..laldaakavgaalPvtavv 259
                 +   +PGf  +l  +  a   ++  a a g+a+P ta+ 
  MMETSP1061-20121228|1570_1 390 NLMVDPGFAAELNSRQNAwrRVVTLAIANGVAVPSTAAS 428
                 555678998888766544115777777778888888875 PP

>> TIGR01692  HIBADH: 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   8.5e-13     7e-10       3     173 ..       9     191 ..       7     223 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 8.5e-13
   TIGR01692   3 GlGnmGgpmaanllkaghavrvfdlsakaveelveaGaqaaasaaeaveeadvvitmlPagkhvesvyagdegilakv.......kkksllidsstid.vdsarkvaeeaaakGavfldaPvsGGvggaraGtltfmvGgeaeefaraepvleamgkni......vhaGdaGaGqaakiCnnlll 173
                 Gl  mG+  a n++ +g++v v + s+++v++ v+  ++  + + e  +e+   i+ l   ++v  + ++ + + a +       + + ++id      ++s r  +ee + kG +f+   +sGG  gar G  ++m Gg+ e+++  ep+l+  + ++       ++G  GaG   k+  n + 
  MMETSP1061-20121228|1570_1   9 GLAVMGQNFALNMAEHGFKVAVCNRSPSKVDTTVARAKEEGDLPLEGHKEIKDFIAALAVPRKVVILVMAGKPVDATIaalceylEPGDVIIDGGNEWfPNSVR-RSEELKPKGIHFIGMGISGGEEGARKGP-SLMPGGPIEAYKLIEPILTKCAAQVdgeactGYCGPIGAGNYVKMVHNGIE 191
                 999************************************************99999999988876666554444433300011115677899987654155555.5677899********************7.99****************98887653333336************9988664 PP

>> TIGR02695  azurin: azurin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.2e-05     0.034      46     111 ..     268     332 ..     255     344 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.2e-05
   TIGR02695  46 lvlaksadvqavakdGveagidkdyvkagderviahtkviGgGektsvtfdvsklsagedykffcs 111
                 + + + a  q+va   ++a++d+ y+    +  +a+ k++ g   + +++d +++ ++ + + +cs
  MMETSP1061-20121228|1570_1 268 WTVQE-AAEQSVAAPTIAAALDARYLSGRKDERVAASKILEGPSPSQISVDKDQILEDLQAALYCS 332
                 55554.55689***************9755555577899**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1695.02
//
Query:       MMETSP1061-20121228|1572_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-10   38.3   0.4    5.3e-09   33.9   0.3    2.2  1  TIGR03664 fut_nucase: futalosine nucleosidase
    4.2e-10   37.4   0.4    1.6e-08   32.2   0.3    2.1  1  TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase
    4.1e-08   30.9   0.1    5.9e-08   30.4   0.1    1.2  1  TIGR03468 HpnG: hopanoid-associated phosphorylase
  ------ inclusion threshold ------
      0.016   11.8   0.1      0.037   10.6   0.0    1.6  2  TIGR03701 mena_SCO4490: menaquinone biosynthesis decarboxylase, SCO4490 family


Domain annotation for each model (and alignments):
>> TIGR03664  fut_nucase: futalosine nucleosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.3   5.2e-12   5.3e-09      19     204 ..      57     245 ..      39     271 .. 0.74

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 5.2e-12
   TIGR03664  19 kgs................tpvgegslvsvrrkevtvlvaG...vGkvaAAaataaalara.....pvelvislGiaGgfpgka.evGdlvladeeiaaDlGaetpegflsleaLGlplleekgsstvnavpldpdlverlatllralglkvatGsvltvstvtgteeraealaerlgavaEnMEGaavavaaraagvpvlelRgiSNlVg 204
                 + +                  ++e++++ +++++  v  +G   vG v A  at  a+++      p++l+++ G +Ggf  k+ ++Gd+ l +++   D              +G+p +++ g  t++av + ++++         ++l  +tG + t ++   t+ + + ++   +a + +ME+aa+a +a++ ++p++ +  i   V+
  MMETSP1061-20121228|1572_1  57 ELKlvegffpshtpflaysGTHSETKVTVITMGKDNVYDTGvdnVGTVPASLATFLAVEKMaaegsPIQLILNGGTCGGFARKGgAIGDVFLTTAVANHDR------------RIGIPGFDKYGIGTLEAVIDPSKIA---------ADLGYKTGVCTTGNSLDKTDTDDKYMLDN-DASVKDMEAAAIAWVAKMNNLPYMGVKVITDIVD 245
                 55544444444444444443445555555667777777777333699*******9999998999*9*****************99*******999877774............3455555555556676676444444.........44689999999999999999999999988.***************************9988875 PP

>> TIGR01704  MTA/SAH-Nsdase: MTA/SAH nucleosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.3   1.6e-11   1.6e-08      48     226 ..     100     273 ..      85     276 .. 0.78

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 1.6e-11
   TIGR01704  48 gigkvaaalsatlllerykpd.....vvintgsagglaht.lkvgdvvvsdevryhdvdvtafdyeygqlpglpaaykadekliaiaeeavaeldliqvvkglivsgdafindskrlekvrarfsdliavemeaaavaqvchqfkvpfvvvralsdvadk..eshlsfdeflevaakqsselveklv 226
                  +g v a+l++ l +e++  +     +++n g+ gg+a+    +gdv +++ v  hd  +   +++   +  l a    d   i       a+l       g+ ++g+++ +     ++     +d+   +meaaa+a v +  + p++ v+ ++d+ d    sh  f e l+ aak     + k+v
  MMETSP1061-20121228|1572_1 100 NVGTVPASLATFLAVEKMAAEgspiqLILNGGTCGGFARKgGAIGDVFLTTAVANHDRRIGIPGFDKYGIGTLEAVI--DPSKI------AADLGY---KTGVCTTGNSLDKTD--TDDKYMLDNDASVKDMEAAAIAWVAKMNNLPYMGVKVITDIVDGgvPSHEEFMENLASAAKSLQDALPKVV 273
                 47999999*99999999865322223899********975268**************99998888765566666543..33333......355655...789999999984444..444444556888899**************************9752279***********998777766666 PP

>> TIGR03468  HpnG: hopanoid-associated phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   5.7e-11   5.9e-08      46     164 ..     124     250 ..      86     263 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 5.7e-11
   TIGR03468  46 vaglvSfGvAGaLdpa.LkpGdlvvpeevraegerl...padsawrrrllealeaal.....rvsagvlaasdevvssaaeKaalaaatgAaaVDMESgavaavAaeaglPFlviRviaDpadralPa 164
                 ++ ++  G++G+ + +  + Gd+ + ++v+++++r+     d++    l++++  +        ++ +++ +++ + +++  ++ +  + A + DME++a+a vA+ ++lP++ + vi+D +d  +P+
  MMETSP1061-20121228|1572_1 124 IQLILNGGTCGGFARKgGAIGDVFLTTAVANHDRRIgipGFDKYGIGTLEAVIDPSKiaadlGYKT-GVCTTGNSLDKTDTDDKYMLDNDASVKDMEAAAIAWVAKMNNLPYMGVKVITDIVDGGVPS 250
                 556677799999987625779**********99998777789999999999887443322324444.55666666655544444455679*********************************99997 PP

>> TIGR03701  mena_SCO4490: menaquinone biosynthesis decarboxylase, SCO4490 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.6e-05     0.037     250     306 ..      41      98 ..      15     113 .. 0.79
   2 ?   -2.0   0.0      0.24   2.5e+02     384     408 ..     208     232 ..     206     250 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.6e-05
   TIGR03701 250 vpadaeivleGyvdtee.lrlEGPFGDHtGfYtpaekyPvlevtaithrkdaiypatv 306
                 vp   e     +v+  e   +EG F  Ht f +   ++   +vt+it+ kd +y + v
  MMETSP1061-20121228|1572_1  41 VPIVMEAEAAPFVEHLElKLVEGFFPSHTPFLAYSGTHSETKVTVITMGKDNVYDTGV 98 
                 555555555667888884568*********************************9877 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.24
   TIGR03701 384 vvdedvdlkdleevleevlervdpk 408
                 ++d+d+ +kd+e+ + +++++++  
  MMETSP1061-20121228|1572_1 208 MLDNDASVKDMEAAAIAWVAKMNNL 232
                 6899999***999999999888764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 1652.73
//
Query:       MMETSP1061-20121228|1573_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 978.92
//
Query:       MMETSP1061-20121228|1574_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00066   17.3   0.1      0.046   11.3   0.1    2.9  1  TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
  ------ inclusion threshold ------
      0.034   10.2   0.0      0.052    9.6   0.0    1.2  1  TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00530  AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   2.3e-05     0.046      10      47 ..     191     236 ..     185     312 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.3e-05
   TIGR00530  10 enlpkkkavlvvanHqsnlDiltlsaafa........pplvfiAKk 47 
                 e++++ ++v+  anHqs  D+ ++s +++          +v++A +
  MMETSP1061-20121228|1574_1 191 EQAKNGENVVFYANHQSEADPQVMSIMCEkagfgkeaEDIVYVAGH 236
                 56667789*****************998866666666666666655 PP

>> TIGR00641  acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   2.5e-05     0.052     386     433 ..     268     315 ..     260     328 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 2.5e-05
   TIGR00641 386 ekalkyiekieemGGmlkaieeGipkkeieeaaarkqkeideGkkviv 433
                  ka k  +++++mGGml  +++G     ++ +  r ++++++Gk++i 
  MMETSP1061-20121228|1574_1 268 TKAEKSRQNMQAMGGMLAKLKKGGCMLWVAPSGGRDRRDVESGKTPIA 315
                 6889999*************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 2023.83
//
Query:       MMETSP1061-20121228|1575_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0004   16.0   0.2    0.00052   15.6   0.1    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.005   12.4   0.4     0.0065   12.0   0.3    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   2.5e-07   0.00052     673     799 ..     136     262 ..     127     278 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.5e-07
   TIGR02169 673 ekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeiee 799
                  k  + +l++ +e+Le++   + s+++ + k+ld  ++++   +k++++++ +l++l ++ ++++  l  +++ +s++++ ++   + ++++    ++  ++la++ ++ e++++++++e++++  +
  MMETSP1061-20121228|1575_1 136 SKFLVTSLEKVKEALEEQIGVVSSKQDDLSKKLDGTHDSVMGLHKELGDARTDLDRLGDSMARQESTLSSSHKTMSYTSKGVTLLVRCVAAMLPTNDRTIHDLAEYIKDGEEIQKHQEKEQLQKRLA 262
                 5555677888888999999999999999999999999999999999999999999999999999999999999999999888877666555555555555555555555555555555555554433 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.3   3.2e-06    0.0065     769     881 ..     144     256 ..     129     276 .. 0.49

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.2e-06
   TIGR02168 769 eeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleell 881
                 e+  e +ee++  +++++++l+++++ + +++  l ++l +++++l++l +++a++e++l+s++k+++ ++k ++ l +  + +  +  +  + ++e+ ++ ee+++  e+ +
  MMETSP1061-20121228|1575_1 144 EKVKEALEEQIGVVSSKQDDLSKKLDGTHDSVMGLHKELGDARTDLDRLGDSMARQESTLSSSHKTMSYTSKGVTLLVRCVAAMLPTNDRTIHDLAEYIKDGEEIQKHQEKEQ 256
                 22233333444444455555555555555555555555555555555555555555555555555555555555554444444444444444444444444443333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1114.96
//
Query:       MMETSP1061-20121228|1576_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.6e-193  640.5   0.0   5.4e-193  639.9   0.0    1.2  1  TIGR00499 lysS_bact: lysine--tRNA ligase
    4.2e-66  221.3   0.0    6.7e-66  220.6   0.0    1.3  1  TIGR00462 genX: EF-P lysine aminoacylase GenX
    1.3e-46  157.0   0.0    2.4e-32  109.9   0.0    2.5  2  TIGR00459 aspS_bact: aspartate--tRNA ligase
    2.3e-45  153.1   0.0    6.3e-45  151.7   0.0    1.7  1  TIGR00458 aspS_arch: aspartate--tRNA ligase
    5.4e-25   85.9   0.0    1.2e-24   84.8   0.0    1.5  1  TIGR00457 asnS: asparagine--tRNA ligase
    0.00062   17.0   0.1       0.17    9.0   0.0    2.9  3  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
    0.00093   16.3   0.1       0.15    9.1   0.0    2.4  2  TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  639.9   0.0  9.2e-196  5.4e-193       6     495 ..     215     706 ..     210     707 .. 0.96

  Alignments for each domain:
  == domain 1    score: 639.9 bits;  conditional E-value: 9.2e-196
   TIGR00499   6 lqqrlekleelreegeepylnklertkeakelqeeyaklkneeleekelevsiaGRikakRsmgkatFitlqdesgklqlyvnkdklsedveeleeklldlGDiigvkGklkktktgelsvkveelklltkalrplPekfhGlkdqEtryrkRylDlivnkesrqtflkRskiikaiRkfldergflEvEtPilqsisgGAsAkPFithhnaldvdlylRiApElyLKrLivgGlekvyEigrvFRnEGvdttHnpEFttiElYqayadyedllelteellktlvkellgtlkikykeeeldlkkpvkkitmleaikkidketgislddlkdse...takalakklaievaekslslgkilnklfeefvEetliqPtfiteyPaeisPLAkrddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDedfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFpalreq 495
                   +rl k+e++re + ep+++++  t++a++l ++y ++ ++ +e++   v +aGRi+++R+ gk++F++lqde g +ql  +k++l + ++ +++ + d GDiigv+G + +t +gel+++++e k+ltk++ plP+k+hGl+d  +ryr+R +Dlivn+++r+tf+kR+ki++++R+ lde gflE+EtP+l+s+sgGA+AkPF t+hn+ld+dl lRiA+El+LKrLi+gG+e+vyE+gr+FRnEG++t+HnpEFt+iElYqayady+d++elte+l+ t++ e+ g l i y+e ++ l+kp++++tm++ +k+   +++ +  dl+d e   +aka+a +++++  e+  s+g++ln+ fee++E +liqPtf+++yP+e+sPL k ++++p+l+eRFElF  g+E+an++sEl+dp+dqrerfe+q+a+k+agddea  +De+f++ale G+pptgGlGiGiDRlvmllt+s+sirdv++Fp lr++
  MMETSP1061-20121228|1576_1 215 KLNRLAKVEAMREANVEPFEYTFDVTASAAQLAADYTDKLEPGEEDEGSDVGVAGRIMTRRVFGKLAFFSLQDETGIIQLQFDKKRLGDTFKGIKNWT-DGGDIIGVRGSVRRTDKGELTIYATEWKMLTKSVLPLPDKWHGLQDITKRYRQRHVDLIVNPDVRDTFRKRAKITSMMRRLLDEDGFLEIETPVLHSQSGGAEAKPFETYHNSLDMDLTLRIATELHLKRLIIGGFERVYEVGRIFRNEGLSTRHNPEFTSIELYQAYADYHDMMELTENLVCTIADEVCGGLVIPYGEDTVSLEKPWRRVTMHDIVKEEIPDFDFAALDLDDPEslvKAKAAAASANVPGVEDLNSVGEVLNTCFEELCEPKLIQPTFVIDYPVEVSPLSKPHRSKPGLVERFELFAVGREHANSFSELTDPVDQRERFEAQAAKKAAGDDEACDVDEEFLTALEQGMPPTGGLGIGIDRLVMLLTNSPSIRDVIAFPLLRPD 706
                 56899*************************************99**************************************************9999.*************************************************************************************************************************************************************************************************************************97777776655555554411167888888889888999****************************************************************************************************************************************986 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.6   0.0   1.1e-68   6.7e-66       2     304 .]     381     700 ..     380     700 .. 0.90

  Alignments for each domain:
  == domain 1    score: 220.6 bits;  conditional E-value: 1.1e-68
   TIGR00462   2 kkrakllaaiRafFaergvlEvetpllseapvtdvhlealktelleeekekeklyLqtSPEyamKrLLaagsgkifqlakvfRneergrlHnpEFtmLEwYrvgadleelmeeveellqevle...............deeaeverlsyaeafer.ylgidplta......sleelkeaaekag.eaaseeedredlldlllvekvepklgkerptflydyPasqaaLarikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieevlaf 304
                 +krak+++ +R+ ++e g+lE+etp+l ++++  ++ ++++t    +++ + +l L+   E+++KrL+  g +++++++++fRne  +++HnpEFt +E Y++ ad++++me +e+l+ ++++               + e++++r+++++++++ + ++d  +       sl + k+aa++a+   +++ ++  ++l++++ e  epkl   +ptf++dyP++ + L++ +++++++ eRfEl++ g E aN+f+ELtd++ qr+Rfe++ a+++a   e  ++de++l+ale+g+p++ G  +G+DRL+ml++++ si++v+af
  MMETSP1061-20121228|1576_1 381 RKRAKITSMMRRLLDEDGFLEIETPVLHSQSG-GAEAKPFETY---HNSLDMDLTLRIATELHLKRLIIGGFERVYEVGRIFRNEGLSTRHNPEFTSIELYQAYADYHDMMELTENLVCTIADevcgglvipygedtvSLEKPWRRVTMHDIVKEeIPDFDFAALdlddpeSLVKAKAAAASANvPGVEDLNSVGEVLNTCFEELCEPKLI--QPTFVIDYPVEVSPLSKPHRSKPGLVERFELFAVGREHANSFSELTDPVDQRERFEAQAAKKAAGDDEACDVDEEFLTALEQGMPPTGGLGIGIDRLVMLLTNSPSIRDVIAF 700
                 79************************987655.4566899999...45678899999999****************************************************************************9999***********998624467765554443222223333333333455667788899**************8..69************************************************************************************************************997 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.9   0.0     4e-35   2.4e-32      13     262 ..     259     503 ..     249     553 .. 0.84
   2 !   44.3   0.0     3e-15   1.7e-12     517     555 ..     663     701 ..     653     705 .. 0.94

  Alignments for each domain:
  == domain 1    score: 109.9 bits;  conditional E-value: 4e-35
   TIGR00459  13 kslgkkvtlaGWverrkdlGeliFidlrDkegivqvvsdkk..kealelakelrn.edvvqvkgkvslreeesknrnldtgeievlaeeitvlnkskk.kPleiekkeaeeevrlkyRYLdL.RrpkmqqrlklRskvtkavRnflddkgFleietPiLt.katPeGardyLvPsRvkkgefyaLpqsPqlfkqLLmvsGvdkYyqiarcfRDeDlRaDRqPeftqiDlemsFlnqedvmelveklvsevfkevkk 262
                 ++ g +v +aG + +r+  G+l F  l+D++gi+q+ +dkk   ++++ +k+ +   d++ v+g v  r         d ge+ ++a e ++l ks   +P + +  + + + r + R++dL  +p + +++++R+k+t+++R+ ld+ gFleietP+L  ++    a+ +        +    L  +  l+ + L+++G+++ y + r+fR+e l     Peft i+l  ++++ +d+mel+e+lv+ +  ev +
  MMETSP1061-20121228|1576_1 259 EDEGSDVGVAGRIMTRRVFGKLAFFSLQDETGIIQLQFDKKrlGDTFKGIKNWTDgGDIIGVRGSV--R-------RTDKGELTIYATEWKMLTKSVLpLPDKWHGLQDITK-RYRQRHVDLiVNPDVRDTFRKRAKITSMMRRLLDEDGFLEIETPVLHsQSGGAEAKPFETYHN-SLDMDLTLRIATELHLKRLIIGGFERVYEVGRIFRNEGLSTRHNPEFTSIELYQAYADYHDMMELTENLVCTIADEVCG 503
                 677999***********************************77788888888876369********..3.......367899***********9886414556666666777.89999***9459*********************************961344444555543332.245558999****************************************************************999987 PP

  == domain 2    score: 44.3 bits;  conditional E-value: 3e-15
   TIGR00459 517 lleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFP 555
                 +l a+e G Pp +Gl++G+DRlvmll+++ siRdviaFP
  MMETSP1061-20121228|1576_1 663 FLTALEQGMPPTGGLGIGIDRLVMLLTNSPSIRDVIAFP 701
                 589***********************************9 PP

>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.0   1.1e-47   6.3e-45       8     420 ..     258     701 ..     250     706 .. 0.80

  Alignments for each domain:
  == domain 1    score: 151.7 bits;  conditional E-value: 1.1e-47
   TIGR00458   8 eekdgkevllrgwvheirdlGalifvllrdregliqilvkkkkvskelfklikkl.kkesvvavkGkvkekekapqgleiipeklevlneakeplPldleekveaeldtrldarfldl.rrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfei.tyf...ereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkk..............elevle.vklevpeeklerltydeaieilrakG....keikdgedlsteaekllG.......ekmdglyfitdfPteikPfytmPdednPeisksfdllyrdleissGaqr....ihdydllvekikakGlePe....slksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfP 420
                 ee +g +v + g++   r  G+l+f  l+d+ g+iq    kk++++  fk ik+  +  +++ v+G v++ +k  ++l i+ ++ ++l+++   lPl  + +   ++  r  +r +dl  +p v+  f+ r+++  ++r  l e+gf+e++tP l + +  GG+e  +  ty    + +  l  +  l+ + l+  g+ervye++ ifr e   t rh  e++si++  a++d +d++++ e+lv ++ ++v   l                ++ + + vk e+p+  +  l+ d+   +++ak      +++  edl    e l          k+    f++d+P+e+ P+ + P+ ++P   + f+l+  + e +         + + + +  +  +k    +      +++l a++ GmPP  G G+G++rlvm l++   ir+++ fP
  MMETSP1061-20121228|1576_1 258 EEDEGSDVGVAGRIMTRRVFGKLAFFSLQDETGIIQLQFDKKRLGD-TFKGIKNWtDGGDIIGVRGSVRRTDK--GELTIYATEWKMLTKSV--LPLPDKWHGLQDITKRYRQRHVDLiVNPDVRDTFRKRAKITSMMRRLLDEDGFLEIETPVLHSQS--GGAEAKPFeTYHnslDMDLTLRIATELHLKRLIIGGFERVYEVGRIFRNEGLST-RHNPEFTSIELYQAYADYHDMMELTENLVCTIADEVCGGLVIpygedtvslekpwrRVTMHDiVKEEIPDFDFAALDLDDPESLVKAKAaaasANVPGVEDLNSVGEVLNTcfeelcePKLIQPTFVIDYPVEVSPL-SKPHRSKPGLVERFELFAVGREHANSFSEltdpVDQRERFEAQAAKKAAGDDeacdVDEEFLTALEQGMPPTGGLGIGIDRLVMLLTNSPSIRDVIAFP 701
                 57789**********************************9999986.5788877615689*********9998..6899*******997665..55555556778999*********94589*******************************887765..666665542454111457789999************************998865.9***********************************98877677888999988887555444257799************9999987751111567788999876665444554444356667789**********8.67999************9998876665550111444444443333333222233435689**************************************9 PP

>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0     2e-27   1.2e-24       8     448 ..     254     702 ..     248     708 .. 0.77

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 2e-27
   TIGR00457   8 leqvkkavdeevkvsgWvktkRsskkiaFlelrDGsslkalqavikkeleeeleqelkklttgssvs.vsgkvvespkkkqelElkvkkievvgeaeeedyplqkkehsle.....flrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvktegvdfskdffgkeayLtvsgqlelEalal.alskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavlee....akqelkfleknvekkkikk.leeiiss.kfaritYtdAieiLkesda...kkkfeledl..wGvdlktehErflaeeyfksPvfvtdyPkeikaFYmkqnddektvaavDllvPkiGEiiGGseReddldkLe...erl.keegldte...elkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpR 448
                 le  ++  +++v v g + t+R  +k+aF +l+D +  + +q   +k+   ++++ +k+ t g  ++ v g v +++k   el + +++ +++++      pl  k h l+     + + +  L +  + +    + R+++++ +++  +++gf++++tP+l s+     ++ F++        ++  + +  L +++ l+l  l++  +++vy +g  FR E   t RH  Ef+ iE   a+++ +d+++l+e+l+ +i  +v         ++   lek   + +++  ++e i   +fa ++ +d  +++k + a    +   +edl   G+ l+t  E  l+e    +P+fv+dyP e+ +    +  ++  v+ ++l++ +       se  d +d+ e   ++  k+   d e     + +l     G  p +G G+G++Rlv  lt+   ird+i fp 
  MMETSP1061-20121228|1576_1 254 LEPGEEDEGSDVGVAGRIMTRRVFGKLAFFSLQDET--GIIQLQFDKKRLGDTFKGIKNWTDGGDIIgVRGSVRRTDK--GELTIYATEWKMLTKSV---LPLPDKWHGLQditkrYRQRHVDLIVNPD-VRDTFRKRAKITSMMRRLLDEDGFLEIETPVLHSQSGGAEAKPFETY-------HNSLDMDLTLRIATELHLKRLIIgGFERVYEVGRIFRNEGLST-RHNPEFTSIELYQAYADYHDMMELTENLVCTIADEVCGGlvipYGEDTVSLEKPWRRVTMHDiVKEEIPDfDFAALDLDDPESLVKAKAAaasANVPGVEDLnsVGEVLNTCFEE-LCEPKLIQPTFVIDYPVEVSPLSKPHRSKPGLVERFELFAVGREHANSFSELTDPVDQRErfeAQAaKKAAGDDEacdVDEEFLTALEQGMPPTGGLGIGIDRLVMLLTNSPSIRDVIAFPL 702
                 55566778999*************************..66777778877788899***99987765439999987764..45666667777666555...77777777655111004444444444444.5667899*************************998766667778777.......345778889********98766527*************98765.9***********************************99977766777888888777666654145556666*********99999988764432333556655689999999885.99********************99889************9876666666666655554321112221222223331212356999999********************************95 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.011       6.3      29      55 ..     384     410 ..     358     424 .. 0.78
   2 !    9.0   0.0    0.0003      0.17     106     155 ..     450     499 ..     426     506 .. 0.84
   3 ?   -0.5   0.0      0.23   1.3e+02     204     227 ..     673     696 ..     665     699 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.011
   TIGR02367  29 lklerelakalvdrGfvevkspilisk 55 
                 +k+   + ++l + Gf+e+++p+l s+
  MMETSP1061-20121228|1576_1 384 AKITSMMRRLLDEDGFLEIETPVLHSQ 410
                 455666778899***********9765 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0003
   TIGR02367 106 rifeiGscyrkesdGsehleeftmlnlvelGspeeerrerleelikevle 155
                 r++e+G  +r e   ++h  eft ++l +  +      e  e+l+ ++ +
  MMETSP1061-20121228|1576_1 450 RVYEVGRIFRNEGLSTRHNPEFTSIELYQAYADYHDMMELTENLVCTIAD 499
                 89*************************99988777777777777666655 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.23
   TIGR02367 204 pwvGlGfGlerllkvredtknvrs 227
                 p  GlG G++rl+++  +   +r 
  MMETSP1061-20121228|1576_1 673 PTGGLGIGIDRLVMLLTNSPSIRD 696
                 5569**********9998888775 PP

>> TIGR00468  pheS: phenylalanine--tRNA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00025      0.15     182     209 ..     450     477 ..     431     500 .. 0.85
   2 !    4.5   0.0    0.0063       3.7     290     311 ..     676     697 ..     664     702 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00025
   TIGR00468 182 rifsigrvfRrdavdatHlpeFhQvegl 209
                 r+  +gr+fR++    +H peF+ +e+ 
  MMETSP1061-20121228|1576_1 450 RVYEVGRIFRNEGLSTRHNPEFTSIELY 477
                 78899********************975 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0063
   TIGR00468 290 afGlgieRlamlkygikdiRdl 311
                 ++G+gi+Rl+ml  +   iRd 
  MMETSP1061-20121228|1576_1 676 GLGIGIDRLVMLLTNSPSIRDV 697
                 68**********9999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.43
# Mc/sec: 2179.35
//
Query:       MMETSP1061-20121228|1578_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 997.84
//
Query:       MMETSP1061-20121228|1577_1  [L=1031]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1031 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.19s 00:00:00.69 Elapsed: 00:00:00.42
# Mc/sec: 3240.02
//
Query:       MMETSP1061-20121228|1579_1  [L=972]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 2983.57
//
Query:       MMETSP1061-20121228|1582_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1027.22
//
Query:       MMETSP1061-20121228|1581_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          4    5.6   8.7        4.5    5.4   6.0    1.1  1  TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family


Domain annotation for each model (and alignments):
>> TIGR02898  spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.0    0.0011       4.5      18      53 ..      24      60 ..      18      69 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0011
   TIGR02898 18 aekkskdnnnveeknveekaangentakdtnq.gekl 53
                + ++++ nn+    n++++++n++n+++++n+ +  +
  MMETSP1061-20121228|1581_1 24 NGNNHHHNNHHSGGNYNNSNNNNNNNSNNNNNnNSET 60
                4455566777777777666655444444444413333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 493.22
//
Query:       MMETSP1061-20121228|1585_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.17
# Mc/sec: 504.66
//
Query:       MMETSP1061-20121228|1587_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-20   68.2   0.2    2.6e-07   28.3   0.0    5.9  5  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   1.5e-05     0.061       8      26 ..     125     143 ..     124     145 .. 0.88
   2 !    3.9   0.0    0.0035        15       4      35 .]     152     186 ..     149     186 .. 0.72
   3 !   28.3   0.0   6.4e-11   2.6e-07       1      35 []     187     222 ..     187     222 .. 0.91
   4 ?    2.4   0.0     0.011        44       1      14 [.     223     236 ..     223     257 .. 0.68
   5 !   14.5   0.0   1.5e-06    0.0063       3      28 ..     263     288 ..     263     289 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.5e-05
   TIGR00756   8 sglckagrveeAlelfdeM 26 
                  gl++ gr++eAl+lf+++
  MMETSP1061-20121228|1587_1 125 VGLGRKGRTDEALKLFESI 143
                 59**************975 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0035
   TIGR00756   4 ntlisglckag..rveeAlelfdeM.kergivPda 35 
                 n  i+++++a+  r+++A+e++de   + +++P++
  MMETSP1061-20121228|1587_1 152 NGAIDACARARptRLKKAFEILDEAtSKFNLKPNV 186
                 56677777777446699*****9995555999985 PP

  == domain 3    score: 28.3 bits;  conditional E-value: 6.4e-11
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMker.givPda 35 
                 +t+ +li+++ +a++v++A++ +++M+++ g+vP+a
  MMETSP1061-20121228|1587_1 187 FTFGSLINACNRARNVDKAIQTLRSMEKDyGVVPNA 222
                 699***********************5555****96 PP

  == domain 4    score: 2.4 bits;  conditional E-value: 0.011
   TIGR00756   1 vtyntlisglckag 14 
                 v+y++ is+++++ 
  MMETSP1061-20121228|1587_1 223 VVYSSAISACARSE 236
                 68999999999875 PP

  == domain 5    score: 14.5 bits;  conditional E-value: 1.5e-06
   TIGR00756   3 yntlisglckagrveeAlelfdeMke 28 
                 +n+ is++++a ++e A++l+ +M+e
  MMETSP1061-20121228|1587_1 263 FNAAISACAQASDWENAISLLTRMEE 288
                 799*********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1311.38
//
Query:       MMETSP1061-20121228|1590_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         6  (0.0014627); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 485.72
//
Query:       MMETSP1061-20121228|1591_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 415.77
//
Query:       MMETSP1061-20121228|1583_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   15.8  12.2      0.019   13.2   8.5    2.5  1  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
  ------ inclusion threshold ------
        6.1    2.8  34.7         10    2.1  24.1    1.3  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   8.5   9.2e-06     0.019      10      43 ..     480     513 ..     474     514 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.2e-06
   TIGR03892  10 EisDyadlaevgassgatstsssSsCsTcsctsS 43 
                 Ei + ++++e + +++ +s+sssSs+s++s++sS
  MMETSP1061-20121228|1583_1 480 EIEEEVEESEADMTNNKSSSSSSSSSSSSSSSSS 513
                 8999999******999999999999999999987 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1  24.1     0.005        10     202     435 ..     284     544 ..     228     574 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.005
   TIGR00934 202 dsvhsdqnsedvk.........sdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdk.iseansl.aaesdeessesrriqeki.krrlstssiekns..........................qqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldseenayptynde 435
                 d+          +         ++ +++e+++  + d  +e+ ++++++ e+  ++ e+   + ++l++ i++l+e++e +++++d  ++e ns  +   de + + ++++e++ + + s+ + e  +                          +++ + ++ ++ +++++    e + +   a +   +e+++++d+ +  e++ ++ +++ ++++   +n+k+ + s ++++s+ + ++ng + d   + + ee+ +++ee+ +  y++e
  MMETSP1061-20121228|1583_1 284 DN----------SrrkrkarklEEDKKEEEVE-EEEDALEEDLEDEEMSNEELYEENETLSKENQELEEEIEELKEENELEDEVNDSlVDEENSElDEMADEYNEDIMVVEEEMyEDAQSYVDAEFAEdeqnlqkdidaatddktkeeltenleEDEDEEVVVDEEYEEDEELLDEYADVYADAADEAFDEFENEEDTTDALEDQKDEIEEEVEESEADMTNNKSSSSSSSSSSSSSSSSSNGSASDDVYEEMAEEIYEEEEEEVEEEYEEE 544
                 11..........12233344443334444444.68899999999999999999999999999999999999999999999999999864555543033333333333333333212333333433333444444444444444444555455554444444444444444445666677777788888999999999999999999999999999999999999999999999999999999998888888888777777777444433332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       491  (0.119698); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.74u 0.14s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 1460.40
//
Query:       MMETSP1061-20121228|1596_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1061-20121228|1595_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 1429.88
//
Query:       MMETSP1061-20121228|1599_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 430.40
//
Query:       MMETSP1061-20121228|1598_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       864  (0.210629); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                        29  (0.00706972); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.17s 00:00:00.96 Elapsed: 00:00:00.73
# Mc/sec: 676.22
//
Query:       MMETSP1061-20121228|1600_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   12.1   5.9       0.12   10.7   1.6    2.6  2  TIGR01601 PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1


Domain annotation for each model (and alignments):
>> TIGR01601  PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.6     3e-05      0.12      24      71 ..      51     101 ..      44     110 .. 0.77
   2 ?    1.9   0.1     0.016        65      55      69 ..     468     481 ..     455     499 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3e-05
   TIGR01601  24 seqkvsdvgnksicgskeinrs...nekndieskseiqLnnnnpkddeddk 71 
                  e+ +s+ +n    + ++i+r+   n++ d+e++     nn n +dd+d+k
  MMETSP1061-20121228|1600_1  51 LEDTASNPRNYRAPAFQKIRRDenlNQDVDVEQRGSSSNNNSNSNDDDDEK 101
                 577888888999999999999722244558899999999999999999998 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.016
   TIGR01601  55 seiqLnnnnpkdded 69 
                 s+++ nnnn++ ++d
  MMETSP1061-20121228|1600_1 468 SNNRDNNNNNN-SND 481
                 44444454444.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1690.58
//
Query:       MMETSP1061-20121228|1608_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33    8.6   4.0       0.33    8.6   2.8    1.1  1  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.8   8.1e-05      0.33     125     144 ..       2      21 ..       1      42 [. 0.52

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 8.1e-05
   TIGR04032 125 vvvvaaVAvatvalaavavn 144
                 v+v++aVAva+ +++avav 
  MMETSP1061-20121228|1608_1   2 VAVAVAVAVAVAIAIAVAVG 21 
                 33333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      236  (0.0575329); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 341.97
//
Query:       MMETSP1061-20121228|1609_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    4.3  14.4        3.1    4.2  10.0    1.0  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  10.0   0.00075       3.1     200     247 ..      17      64 ..       4      74 .. 0.59

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.00075
   TIGR01651 200 aeelgddeesedeedtdddqpredeqeeegeeeeegdeasaaeeaeaa 247
                 a +  dd++++d++d+d+d+ ++d+++++ ++ ++++++ ++++ +  
  MMETSP1061-20121228|1609_1  17 ALKCHDDHDDNDDHDDDHDDDNDDHDDDNDDDHDDDHDDDDNDDHDPD 64 
                 455667766666666666666666666666666555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 307.97
//
Query:       MMETSP1061-20121228|1611_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.18
# Mc/sec: 388.63
//
Query:       MMETSP1061-20121228|1607_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 975.25
//
Query:       MMETSP1061-20121228|1602_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 2139.00
//
Query:       MMETSP1061-20121228|1614_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   16.3   0.0     0.0027   15.7   0.0    1.3  1  TIGR00166 S6: ribosomal protein S6


Domain annotation for each model (and alignments):
>> TIGR00166  S6: ribosomal protein S6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.7e-07    0.0027      24      92 ..      42     121 ..      24     124 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.7e-07
   TIGR00166  24 eeykklltknkaeevksedlGkreLaypik...........kqarayYvlmnfeseaavikelertlkindnvlRsliik 92 
                 ee+   + +n++ +++++  G+r  +   k            ++++++  ++++++   +k++e  l +nd+vlR   +k
  MMETSP1061-20121228|1614_1  42 EEVSLKVVENGGIVRSIQNHGLRTFPHRFKakypdyltqqrYYEQGRFISVYYDANPTTLKKVENILSMNDQVLRVTHLK 121
                 55666788999******************999**99998877789******************************87766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.41
# Mc/sec: 489.33
//
Query:       MMETSP1061-20121228|1606_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   13.6   1.9      0.025   13.4   1.3    1.1  1  TIGR01870 cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2


Domain annotation for each model (and alignments):
>> TIGR01870  cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   1.3     6e-06     0.025      23      76 ..      12      63 ..       3      66 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 6e-06
   TIGR01870 23 sekkneeivaelellkvklaYavgregrefeelvelleelldkidkiddderra 76
                + +++++ ++++ +l+ ++ Y  gr   ++ee++++ ++++++ +k+++  + +
  MMETSP1061-20121228|1606_1 12 DLTLSKKDKKKVDKLQSQIPYHEGRG--NKEEVQKIKDQIEKIWTKTKEAYEAQ 63
                3667888899**************99..88899999999999999997554555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       420  (0.102389); expected 82.0 (0.02)
Passed bias filter:                      349  (0.0850804); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 311.97
//
Query:       MMETSP1061-20121228|1624_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|1627_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.8   0.0      0.021   12.7   0.0    1.2  1  TIGR02646 TIGR02646: TIGR02646 family protein
      0.032   12.6   0.5      0.032   12.6   0.4    2.1  2  TIGR01601 PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1


Domain annotation for each model (and alignments):
>> TIGR02646  TIGR02646: TIGR02646 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     1e-05     0.021      23      53 ..      23      53 ..       9      76 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1e-05
   TIGR02646 23 QgglCayCeveielldkhieHfrpkeayrkl 53
                 + +C  C+ +++ l+ +i+H+++ ++++  
  MMETSP1061-20121228|1627_1 23 NDDVCFICGASLSRLKRRIDHIKRCSKKHGI 53
                6789*******************99877765 PP

>> TIGR01601  PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   3.9       1.5   3.1e+03      56      63 ..      11      18 ..       1      35 [. 0.50
   2 ?   12.6   0.4   1.6e-05     0.032      38      73 ..      40      78 ..      34      82 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.5
   TIGR01601 56 eiqLnnnn 63
                e+  nn n
  MMETSP1061-20121228|1627_1 11 ENNGNNGN 18
                12222222 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.6e-05
   TIGR01601 38 gskeinrsnekndi...eskseiqLnnnnpkddeddkdn 73
                 + +i+r  +k +i   + +  +q++  n++dd+dd d 
  MMETSP1061-20121228|1627_1 40 RIDHIKRCSKKHGItgrDVRLVVQVRAGNNNDDDDDDDA 78
                567899999999882223456789999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 456.46
//
Query:       MMETSP1061-20121228|1628_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1618.09
//
Query:       MMETSP1061-20121228|1625_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-81  271.1   7.4    5.5e-41  138.9   0.9    2.3  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
      1e-25   88.1   4.9      1e-21   74.9   2.2    2.6  3  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
      0.001   17.0   1.2      0.001   17.0   0.8    1.6  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.9   0.9   4.1e-44   5.5e-41       1     143 [.     124     280 ..     124     286 .. 0.84
   2 !  135.6   0.4   4.1e-43   5.6e-40     213     353 ..     291     431 ..     283     432 .. 0.96

  Alignments for each domain:
  == domain 1    score: 138.9 bits;  conditional E-value: 4.1e-44
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfea............sefgd........igdifeeffgggggsgrrrskarrgedlevelelsleeavkGvekeielerk 143
                 d Ye+Lgv+++A+++++kkAY klak+yHPD+nk++++a +kfke + Aye Lsd+e+r++YDqfgha+++ + ++++++ + f              s   +         +++f+ ffggg    rrr+ ++rg+dl+++++ls++eav+G++k+++l+ +
  MMETSP1061-20121228|1625_1 124 DLYEVLGVPRSANKADVKKAYFKLAKQYHPDTNKDDEAAADKFKEATAAYETLSDDEQRKMYDQFGHAATDPNFQQQQQQGNPFGGgfnfqdggfhfhS---SgggggeidPEELFDAFFGGGA---RRRRGPQRGADLQMHVRLSFHEAVNGASKNLHLRYQ 280
                 78********************************************************************99877754444444445555555655541...0344566667899999999554...6789**************************998765 PP

  == domain 2    score: 135.6 bits;  conditional E-value: 4.1e-43
   TIGR02349 213 kekkkievkiPaGvedgerlrvegkGeagenggesGdLyvevkvkehkiferegndllvevpisfvqailgeeievptlegkvklkipagtqsgevlrlkgkGvkklkskkrGdllvkvkvevPkklskeekelleelaee 353
                  ++++++v+ P+G+++g++lr++g+G +g  g+++G+L+v+v v e+++f r+g+++++e+ +s++qailg++++v+tl+g+v++kip+g q++++l l+gkG++kl++ ++Gd++v++k+e+P+k++++++ell+e+ +e
  MMETSP1061-20121228|1625_1 291 IKERDVKVDTPPGIDNGMNLRLSGEGAEGDPGAPRGNLLVQVLVDEDDYFVRDGSTVHTEALVSITQAILGGTVDVKTLTGEVEVKIPKGCQPDTKLMLRGKGIQKLHGASKGDHVVHLKIEIPQKITQRQEELLREFDDE 431
                 57889************************************************************************************************************************************9875 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   2.2   7.7e-25     1e-21       1      73 [.     122     195 ..     122     211 .. 0.93
   2 !   21.0   0.0   1.4e-08   1.9e-05     727     810 ..     326     410 ..     308     432 .. 0.87
   3 ?   -4.0   1.5      0.53   7.3e+02      87     114 ..     450     475 ..     444     479 .. 0.42

  Alignments for each domain:
  == domain 1    score: 74.9 bits;  conditional E-value: 7.7e-25
   TIGR03835   1 krDyyevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkraryDkyGhDGvDr 73 
                 krD yevLg+ r a++ ++kka+ kLak+yhPD+nk+   aa+ f+e   a++ Ls+ ++r+ yD++Gh   D 
  MMETSP1061-20121228|1625_1 122 KRDLYEVLGVPRSANKADVKKAYFKLAKQYHPDTNKDdEAAADKFKEATAAYETLSDDEQRKMYDQFGHAATDP 195
                 9************************************7778899*************************98874 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1.4e-08
   TIGR03835 727 GDLkvvlkvipsnffqikeddlhvaalvDPlvaynGGiidvfgivklikvkieggikvndlvkikdlGltktk.ykkGsLivqlv 810
                 G+L v + v +  +f+ +   +h++alv    a  GG +dv + + +++vki+ g + +  + ++  G+ k +   kG+ +v+l 
  MMETSP1061-20121228|1625_1 326 GNLLVQVLVDEDDYFVRDGSTVHTEALVSITQAILGGTVDVKTLTGEVEVKIPKGCQPDTKLMLRGKGIQKLHgASKGDHVVHLK 410
                 77878778888899**9****************************************************9976368******996 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 0.53
   TIGR03835  87 ffeeieksdefddltdddkkskkkkkkk 114
                  fe i    + dd  ddd++++  kkkk
  MMETSP1061-20121228|1625_1 450 AFESIFG--KCDDDDDDDTEKDGEKKKK 475
                 4555532..2222123444433333333 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.8   7.5e-07     0.001       8      53 ..     140     182 ..     135     188 .. 0.85
   2 ?   -3.3   0.0       1.4   1.9e+03     103     127 ..     408     432 ..     397     435 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 7.5e-07
   TIGR00714   8 LrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkR 53 
                 ++k y kl kqyHPD   + ++  aa  +  e   Ay+TL d  +R
  MMETSP1061-20121228|1625_1 140 VKKAYFKLAKQYHPD---TNKDDEAAADKFKEATAAYETLSDDEQR 182
                 6899***********...6666678999999*********998776 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.4
   TIGR00714 103 klkkkvkkeiqsllaalvealkeqd 127
                 +lk ++ ++i +++++l   +++++
  MMETSP1061-20121228|1625_1 408 HLKIEIPQKITQRQEELLREFDDET 432
                 5677778888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.56
# Mc/sec: 1113.80
//
Query:       MMETSP1061-20121228|1626_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   12.3   0.0      0.053   11.4   0.0    1.4  1  TIGR00156 TIGR00156: TIGR00156 family protein


Domain annotation for each model (and alignments):
>> TIGR00156  TIGR00156: TIGR00156 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.3e-05     0.053      68     101 ..     105     138 ..      61     156 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.3e-05
   TIGR00156  68 eriddDeyvfkDksGeinveikkkvfnGlevdpk 101
                 e  d+D+y fkD+sG++ +e+  +   G + + +
  MMETSP1061-20121228|1626_1 105 EFSDQDLYTFKDGSGKLPIEVVIRAAAGSNKKVD 138
                 55689***********888877777777665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1731.57
//
Query:       MMETSP1061-20121228|1630_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1239.75
//
Query:       MMETSP1061-20121228|1633_1  [L=950]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   16.5   0.7      0.014   13.2   0.0    2.6  2  TIGR03980 prismane_assoc: hybrid cluster protein-associated redox disulfide domain


Domain annotation for each model (and alignments):
>> TIGR03980  prismane_assoc: hybrid cluster protein-associated redox disulfide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1     0.043   1.8e+02      24      35 ..     504     515 ..     501     520 .. 0.85
   2 !   13.2   0.0   3.5e-06     0.014      11      41 ..     771     801 ..     768     812 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.043
   TIGR03980  24 ygmhCvGCpiaq 35 
                  g+ C +C++++
  MMETSP1061-20121228|1633_1 504 VGIRCPHCHSSE 515
                 7999*****997 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 3.5e-06
   TIGR03980  11 lrkypetvevlmeygmhCvGCpiaqfEtlee 41 
                 l++  +t +vl ++ m C  Cp+   Etl +
  MMETSP1061-20121228|1633_1 771 LSDTSKTLNVLKNHMMRCRKCPTEVRETLMK 801
                 6677899*********************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.68
# Mc/sec: 1843.97
//
Query:       MMETSP1061-20121228|1637_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 452.53
//
Query:       MMETSP1061-20121228|1639_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 773.08
//
Query:       MMETSP1061-20121228|1640_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 970.30
//
Query:       MMETSP1061-20121228|1635_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.003   13.3   0.1     0.0052   12.5   0.1    1.3  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.033   12.6   0.1        1.1    7.7   0.0    2.3  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   2.5e-06    0.0052     719     766 ..     183     230 ..     178     235 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.5e-06
   TIGR02917 719 ykaAiqaykkalkrapssqtvikLaeallasgntaeAaktleawLkeh 766
                 +++A++ay++al+++ +   + +++ al + g+t+eAa+ le+ ++ +
  MMETSP1061-20121228|1635_1 183 LEQAVEAYRAALRKSNKTLVLFYMGVALERLGKTEEAAQILESIQRSE 230
                 789***************************************999876 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.024        50       5      30 ..      78     103 ..      74     108 .. 0.85
   2 ?    7.7   0.0   0.00054       1.1      53     103 ..     181     227 ..     172     229 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.024
   TIGR02795   5 eykaallvlkegdYakAeqaFkaFlk 30 
                  +k+++  l +g +++A++ F+ Fl+
  MMETSP1061-20121228|1635_1  78 LEKSGQPRLASGAFHEAATLFQCFLE 103
                 56777888999************986 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00054
   TIGR02795  53 kkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevi 103
                  ++++A +a++++++   ks+k    l+ +g++l++lg++e+A ++l+ + 
  MMETSP1061-20121228|1635_1 181 DHLEQAVEAYRAALR---KSNK-TLVLFYMGVALERLGKTEEAAQILESIQ 227
                 567788888888888...3444.467999******************9885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 2194.93
//
Query:       MMETSP1061-20121228|1638_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 975.92
//
Query:       MMETSP1061-20121228|1645_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-99  331.5   3.6    8.2e-62  206.8   0.0    3.9  3  TIGR01036 pyrD_sub2: dihydroorotate oxidase
    1.4e-28   97.6   0.1    1.2e-19   68.3   0.0    3.4  3  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
    6.5e-05   20.0   0.0     0.0001   19.4   0.0    1.2  1  TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein
  ------ inclusion threshold ------
      0.029   11.4   0.1      0.075   10.1   0.0    1.6  2  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II


Domain annotation for each model (and alignments):
>> TIGR01036  pyrD_sub2: dihydroorotate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.035        36       4      26 ..      57      79 ..      54      97 .. 0.77
   2 !  114.0   1.2   1.3e-36   1.4e-33      52     138 ..     129     215 ..     113     242 .. 0.84
   3 !  206.8   0.0     8e-65   8.2e-62     132     356 .]     259     517 ..     252     517 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.035
   TIGR01036  4 vrkllflldaekahelvvkvlrl 26
                v+ +   ld+e+ah++++k+  l
  MMETSP1061-20121228|1645_1 57 VPAMRRFLDPETAHKVALKLAIL 79
                66667789********9997655 PP

  == domain 2    score: 114.0 bits;  conditional E-value: 1.3e-36
   TIGR01036  52 GlkfknPlGlaaGfDkdgealdalgalGfGyleiGtvtpkaqeGnekPrlfrliedealinrmGfnnhGvsllverlkraryklpiG 138
                 G+ f nP+GlaaG+Dkdg+a+  l a+GfG++eiG+v  +aq+Gn+ Pr+frl+e++a+inr+Gfn+ G+++++e+l++ r++   G
  MMETSP1061-20121228|1645_1 129 GIVFANPIGLAAGYDKDGTAIAPLLAMGFGFVEIGSVCLQAQPGNPSPRMFRLVEEQAVINRYGFNSTGADAVEEHLNAYRNGNGNG 215
                 899**************************************************************************9966654433 PP

  == domain 3    score: 206.8 bits;  conditional E-value: 8e-65
   TIGR01036 132 ryklpiGinlGknkkteaedakeDYkaslrkvlnladYlvvnvssPntpgLrdLqakealrelltavkeetddlr.......rvkr.................vpvlvkiaPDLseedlediadslveldidGviatnttvsrdlvtgakn.......a....eetGGlsGkpLqkksteiirrlakelkgrlpligvGGidsakealekikaGasLlqiYsaliykGpklvkeivkelekllkedgfgsvk.eaigadrr 356
                  + +++GinlGknk  +++  +eDY++ +rk++++adYlvvnvs Pn +gLrdLq+ ++l+ ll+  ++ +d+l+       ++++                 +p+lvk++PDL++++l+ i ++l +l+idG+i tntt sr+   ++         +     e+GGlsGkpL+++ste ir l+++++ ++p+igvGG+ ++++a+ek+ aGasL+q+Y++++y+Gp +v  i+ e+++l+  +g   ++ e +g+d+r
  MMETSP1061-20121228|1645_1 259 SPPGVVGINLGKNK--TSTTPLEDYQQLIRKLGPYADYLVVNVSCPNLSGLRDLQSADSLEVLLKGCQQARDELAttsnnnkNHHHhqhyqpqqrqrqrrrrpPPLLVKLSPDLTDDELIGISKVLLKLGIDGIILTNTTTSRPDESSPSSspsssssSspyrTEHGGLSGKPLRDRSTECIRLLYETTHAQIPIIGVGGVFDGNDAYEKLCAGASLVQVYTGMVYRGPGMVSSIRDEVAELMIRHGQKDLQaEVVGSDHR 517
                 56689*********..88899*******************************************99999988885222222222224566677777778888889**************************************76544432111111111233589*********************************************************************************999964899***98 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.7e-07   0.00017       7      87 ..     129     210 ..     124     221 .. 0.88
   2 !    6.5   0.0   0.00081      0.83     103     133 ..     279     306 ..     272     329 .. 0.87
   3 !   68.3   0.0   1.2e-22   1.2e-19     158     298 ..     360     514 ..     352     516 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.7e-07
   TIGR01037   7 gielknPvilasGvlgskvealkliakegaGavvtksigleprkGyenPtivev..kaGllnaiGLqnPgveefleelkkvre 87 
                 gi + nP+ la+G    ++ ++ l+a +  G v + s+ l+ ++G+ +P++  +  +  ++n  G+++ g++++ e+l+ +r+
  MMETSP1061-20121228|1645_1 129 GIVFANPIGLAAGYDKDGTAIAPLLAMG-FGFVEIGSVCLQAQPGNPSPRMFRLveEQAVINRYGFNSTGADAVEEHLNAYRN 210
                 899**********988888888888776.********************9876522578******************998875 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00081
   TIGR01037 103 eefaevaeklekadkyvdaleLnvsCPhvkg 133
                 e++ ++++kl    +y+d l +nvsCP+  g
  MMETSP1061-20121228|1645_1 279 EDYQQLIRKLG---PYADYLVVNVSCPNLSG 306
                 89999999999...9************9875 PP

  == domain 3    score: 68.3 bits;  conditional E-value: 1.2e-22
   TIGR01037 158 kPvlakLsPnvtd..ivelakaveeaGaDgltlintlkgmkid.ikakkPiLa.......nktGGlsGpaikpiavrvvydlykkld..iPiiGvGGitsaeDalefllaGasavqvGtavyyeg.kvfkkiieeliaflkeeglksie.eliGl 298
                  P+l+kLsP++td  ++ ++k++ + G Dg+ l nt ++   +   +  P  +       ++ GGlsG+ ++  +  ++  ly++ +  iPiiGvGG+ + +Da e l aGas vqv t++ y+g  ++ +i +e+ +++  +g k+++ e++G 
  MMETSP1061-20121228|1645_1 360 PPLLVKLSPDLTDdeLIGISKVLLKLGIDGIILTNTTTSRPDEsSPSSSPSSSsssspyrTEHGGLSGKPLRDRSTECIRLLYETTHaqIPIIGVGGVFDGNDAYEKLCAGASLVQVYTGMVYRGpGMVSSIRDEVAELMIRHGQKDLQaEVVGS 514
                 59*********9766899******************987544313345565442222222578*********99888888887765444***********************************999*****************99996478886 PP

>> TIGR03916  rSAM_link_UDG: putative DNA modification/repair radical SAM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   9.8e-08    0.0001     147     215 ..     282     350 ..     273     355 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 9.8e-08
   TIGR03916 147 eelleeaglladrlsvnlelPteeglkllaPekskeeilkpmkkvkekiaeskeelkkirkapkfvPaG 215
                 ++l++++g +ad l vn+  P+ +gl+ l    s e +lk  ++ ++++a+++++ k+ ++ +++ P  
  MMETSP1061-20121228|1645_1 282 QQLIRKLGPYADYLVVNVSCPNLSGLRDLQSADSLEVLLKGCQQARDELATTSNNNKNHHHHQHYQPQQ 350
                 78***************************************************************9965 PP

>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.56   5.7e+02     165     198 ..     138     171 ..     134     180 .. 0.83
   2 ?   10.1   0.0   7.3e-05     0.075     160     211 ..     447     501 ..     435     518 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.56
   TIGR03151 165 iaaGGiadgrGlaaalalGaeavqlGtrflvake 198
                 +aaG  +dg  +a  la+G   v +G+  l a+ 
  MMETSP1061-20121228|1645_1 138 LAAGYDKDGTAIAPLLAMGFGFVEIGSVCLQAQP 171
                 689999999999999****999999998887765 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 7.3e-05
   TIGR03151 160 vsiPviaaGGiadgrGlaaalalGaeavqlGtrflva...kesevhpnykekvlk 211
                  +iP+i  GG+ dg  +   l  Ga+ vq+ t ++       s+++ ++ e +++
  MMETSP1061-20121228|1645_1 447 AQIPIIGVGGVFDGNDAYEKLCAGASLVQVYTGMVYRgpgMVSSIRDEVAELMIR 501
                 58****************************9998864111334455555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 1820.06
//
Query:       MMETSP1061-20121228|1644_1  [L=1151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.10s 00:00:00.59 Elapsed: 00:00:00.44
# Mc/sec: 3452.71
//
Query:       MMETSP1061-20121228|1647_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.11s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 2950.60
//
Query:       MMETSP1061-20121228|1652_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|1651_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|1658_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|1656_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 508.40
//
Query:       MMETSP1061-20121228|1660_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.10s 00:00:00.18 Elapsed: 00:00:00.20
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|1661_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1061-20121228|1655_1  [L=1722]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-23   81.1  60.5    0.00036   17.7   0.1   13.8 16  TIGR00601 rad23: UV excision repair protein Rad23
     0.0014   15.4   0.0        2.9    4.4   0.0    3.9  5  TIGR03920 T7SS_EccD: type VII secretion integral membrane protein EccD


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.032        66      13      58 ..       2      48 ..       1      93 [. 0.76
   2 ?   -3.2   0.0       0.4   8.2e+02       3      35 ..     140     173 ..     139     185 .. 0.79
   3 ?   -3.1   0.1      0.37   7.6e+02       7      44 ..     367     405 ..     363     427 .. 0.67
   4 ?   -0.0   0.0     0.041        85       2      34 ..     443     476 ..     442     487 .. 0.86
   5 ?   -2.2   0.2       0.2     4e+02      15      67 ..     524     576 ..     519     587 .. 0.74
   6 !   14.4   0.0   1.8e-06    0.0036       3      46 ..     593     633 ..     591     663 .. 0.86
   7 ?   -0.6   0.0     0.063   1.3e+02       5      69 ..     745     806 ..     741     812 .. 0.85
   8 !    8.5   0.3   0.00011      0.23      13      70 ..     825     883 ..     820     894 .. 0.80
   9 !   10.6   0.2   2.5e-05      0.05      13      81 ..     900     966 ..     888     987 .. 0.81
  10 !   10.4   0.2   2.9e-05     0.059      10      72 ..    1024    1084 ..    1015    1098 .. 0.87
  11 !   13.0   0.0   4.8e-06    0.0098       1      68 [.    1117    1181 ..    1117    1186 .. 0.95
  12 !    9.4   0.3   5.6e-05      0.11      12      81 ..    1200    1268 ..    1196    1286 .. 0.80
  13 !   10.7   0.0   2.3e-05     0.046       8      74 ..    1269    1333 ..    1262    1368 .. 0.83
  14 !   11.3   0.1   1.5e-05      0.03       6      68 ..    1376    1435 ..    1371    1446 .. 0.90
  15 !   17.7   0.1   1.7e-07   0.00036       8      70 ..    1448    1507 ..    1442    1518 .. 0.93
  16 ?    1.0   7.8      0.02        41      11      82 ..    1522    1644 ..    1512    1718 .. 0.64

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.032
   TIGR00601 13 fkidlepd.etvkelKekiesekgkdayevaqqkLiy.aGki..LsDdkt 58
                f +d++p+ +tvk l++k+++  g    +v++  L+   Gki  L Dd++
  MMETSP1061-20121228|1655_1  2 FYLDVDPEtDTVKDLRRKVAKTLG---LPVKHLGLVDdDGKIvdLDDDVP 48
                77999998469************9...99999999963699944445544 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.4
   TIGR00601   3 ltlKtlkqqkfkidlepd.etvkelKekiesekg 35 
                 +t+++  ++ f +d++p+ ++v  lK+k +   g
  MMETSP1061-20121228|1655_1 140 ITVRSPDGRCFYLDVDPEsDKVEDLKRKAAMALG 173
                 78888888999******7479*****99876655 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.37
   TIGR00601   7 tlkqqkfkidlepdetvkelKekiesekg.kdayevaqq 44 
                  l ++k+k+ l p+ + k +K+ ie+++    a +  ++
  MMETSP1061-20121228|1655_1 367 MLDKSKVKVPLLPQMKFKDVKDFIEQKIEpTKAKPFHRI 405
                 68999*****************99998762334555555 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.041
   TIGR00601   2 kltlKtlkqqkfkidlepd.etvkelKekiesek 34 
                 k+t+++  ++ f+ d++p+ +tvk lK +i++  
  MMETSP1061-20121228|1655_1 443 KVTVRSPDGRCFHFDVDPEtDTVKDLKARIANAF 476
                 68888889999*******8569********9865 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 0.2
   TIGR00601  15 idlepdetvkelKekiesekgkdayevaqqkLiy...aGkiLsDdktvkeykikek 67 
                 +   p  t+ e+K+ ie++ g   ++ + q++ +     + + D+ t++e k+k +
  MMETSP1061-20121228|1655_1 524 VSTIPMRTIGEIKKVIEEKTG---INRSDQRIFFlddDDQEIDDELTLSEAKVKTH 576
                 55668899***********99...66666665552226788899999999998876 PP

  == domain 6    score: 14.4 bits;  conditional E-value: 1.8e-06
   TIGR00601   3 ltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkL 46 
                 + +K l +++fk+ ++pde v e+Ke+i++++g   +++++ kL
  MMETSP1061-20121228|1655_1 593 IEIKDLSGRTFKVFVDPDESVREMKERIAEKIG---FPIGGFKL 633
                 679******************************...***99998 PP

  == domain 7    score: -0.6 bits;  conditional E-value: 0.063
   TIGR00601   5 lKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdf 69 
                 ++  ++++fk+ +++d  +  +K+ +++      ++ +qq + + G  ++ d  ++  +i ++  
  MMETSP1061-20121228|1655_1 745 VQHWNGENFKLHVQSDWYIDDIKKPVHELTT---IPPDQQNISFKGEPVKGDLQLAKQGIVQGSI 806
                 6667889*********************999...9**********99999999998888876655 PP

  == domain 8    score: 8.5 bits;  conditional E-value: 0.00011
   TIGR00601  13 fkidlepdetvkelKekiesekgkdaye.vaqqkLiyaGkiLsDdktvkeykikekdfv 70 
                 ++  ++p+ tv ++K+k  ++  k+  +   +  L+  G+ L D++t++e++i+ +d  
  MMETSP1061-20121228|1655_1 825 VRFVVKPSYTVEKIKRKAFKKLKKEKNDsSHNFCLLIGGRELDDKETLEETNIQHDDIC 883
                 566789*********9976666555555055678999*****************99965 PP

  == domain 9    score: 10.6 bits;  conditional E-value: 2.5e-05
   TIGR00601  13 fki.dlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavk 81 
                 f + ++  +et+  lKe+i ++ +   ++++ q+L   Gk LsD +t++  ++  +  +v+    +K+  
  MMETSP1061-20121228|1655_1 900 FYLdNVRRNETIASLKERIFKSVA---IPIDDQRLSLDGKRLSDVNTIEKEQVRHRAILVLEPLDSKTEV 966
                 66646889************9998...**************************99999887655555554 PP

  == domain 10    score: 10.4 bits;  conditional E-value: 2.9e-05
   TIGR00601   10 qqkfki.dlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvv 72  
                  +++f++ ++  +++v+e+K++i   +g   +  + qk+ + GkiL ++kt+ e  +  +  +v+
  MMETSP1061-20121228|1655_1 1024 GDTFTLsNILLQTKVSEIKNEILRARG---IARKMQKIKFDGKILDEKKTLLEQSVRHRSVLVL 1084
                  5677777788899**************...9999********************9999888775 PP

  == domain 11    score: 13.0 bits;  conditional E-value: 4.8e-06
   TIGR00601    1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekd 68  
                  +++t+K  ++++f++   p++ +  +K+ i + k+   ++ ++++L + G   + dk +k+ +i ++ 
  MMETSP1061-20121228|1655_1 1117 INITVKDWNGDEFNLSPAPNDYIDDVKDLIRDVKS---IPLEEIRLSFEGEPTQGDKNLKDQHIVDGS 1181
                  589********************************...**************************8875 PP

  == domain 12    score: 9.4 bits;  conditional E-value: 5.6e-05
   TIGR00601   12 kfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavk 81  
                   ++i++e ++ +  +K+ki++  ++     a + ++  G  L  +kt+++y+i  +d + v   + K ++
  MMETSP1061-20121228|1655_1 1200 LVSINVEMEQMIRDVKKKIAKM-SRGKLSLASICIMSGGEELDSSKTITDYGIYHEDTLKVETYQVKVMH 1268
                  5889***************975.5589***************************9999988888888776 PP

  == domain 13    score: 10.7 bits;  conditional E-value: 2.3e-05
   TIGR00601    8 lkqqkfki.dlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmv 74  
                  + ++ f+i ++ p  t   +K+++ +  +   +++++q L  +G iL D++++++ ++  k  +++ +
  MMETSP1061-20121228|1655_1 1269 FIGKVFTIdKVTPASTPRDVKDHLSAFMS---FPIDEQVLCLNGMILDDSRSLSDQGVRHKAVMILEL 1333
                  566789997799*****************...**************************9998777655 PP

  == domain 14    score: 11.3 bits;  conditional E-value: 1.5e-05
   TIGR00601    6 KtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekd 68  
                  +  ++++f+id++p e v  lKe+i  +k    +++++q+L +  + + D+k +ke +i ++ 
  MMETSP1061-20121228|1655_1 1376 QHWNGETFTIDAKPTEYVDDLKERIFLSKK---IPINRQQLEFKEQPVCDQKCLKEQGIVNNT 1435
                  566789***********************9...***********************9997765 PP

  == domain 15    score: 17.7 bits;  conditional E-value: 1.7e-07
   TIGR00601    8 lkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfv 70  
                  +k++k+ + ++p++ v +lK++ ++++    ++++ q L+ aG  L+D k ++ y+i++++ +
  MMETSP1061-20121228|1655_1 1448 YKDRKVALAADPKDSVFQLKKQFQKQIE---IPIECQCLVLAGEELADAKKLSHYGIQDGEIL 1507
                  68899***********************...***************************99865 PP

  == domain 16    score: 1.0 bits;  conditional E-value: 0.02
   TIGR00601   11 qkfki.dlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavk.....................................................a 82  
                  + f++  +++  tv elK +i++ ++   ++ a q L   G  + D   +k+ +ik    v + ++ k + +                                                      
  MMETSP1061-20121228|1655_1 1522 NVFEVtGIHSGSTVEELKARIQKLNS---IPPADQVLTADGMPVIDTMRLKDQEIKHSSIVTLALASKSTRTfqspvrtksadfealkeegsessdcttsistavsqtsenwwnlpteksesrrvK 1644
                  556776688999************99...***************************9998887777666655667777655555555555444444444444444444444333333222222221 PP

>> TIGR03920  T7SS_EccD: type VII secretion integral membrane protein EccD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0015       3.1      54      81 ..     786     813 ..     781     823 .. 0.88
   2 ?    0.6   0.0      0.02        41      48      81 ..    1055    1088 ..    1036    1101 .. 0.79
   3 !    4.4   0.0    0.0014       2.9      23      81 ..    1138    1189 ..    1136    1237 .. 0.78
   4 ?   -2.3   0.0      0.15   3.1e+02      53      78 ..    1307    1332 ..    1303    1353 .. 0.89
   5 ?   -3.5   0.0      0.36   7.3e+02      56      78 ..    1488    1510 ..    1485    1512 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0015
   TIGR03920  54 ggppldldasLdeagVvDGdlLvLrpvs 81 
                  g p + d+ L+++g+v+G+ L+L+p s
  MMETSP1061-20121228|1655_1 786 KGEPVKGDLQLAKQGIVQGSILILVPMS 813
                 68999********************987 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.02
   TIGR03920   48 WvlarlggppldldasLdeagVvDGdlLvLrpvs 81  
                   + ++ +g  ld++++L e+ V++ ++LvL++ +
  MMETSP1061-20121228|1655_1 1055 MQKIKFDGKILDEKKTLLEQSVRHRSVLVLEAPV 1088
                  5566788999********************8644 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0014
   TIGR03920   23 llpevvelvdskakdlggapleagrWvlarlggppldldasLdeagVvDGdlLvLrpvs 81  
                  ++++v +l+    +d+   ple+ r+++    g p + d+ L+++ +vDG++L L+p +
  MMETSP1061-20121228|1655_1 1138 YIDDVKDLI----RDVKSIPLEEIRLSF---EGEPTQGDKNLKDQHIVDGSVLFLEPMR 1189
                  566666666....666666666666654...699999*******************987 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 0.15
   TIGR03920   53 lggppldldasLdeagVvDGdlLvLr 78  
                  l+g  ld ++sL+++gV++ ++++L+
  MMETSP1061-20121228|1655_1 1307 LNGMILDDSRSLSDQGVRHKAVMILE 1332
                  678889*************9999986 PP

  == domain 5    score: -3.5 bits;  conditional E-value: 0.36
   TIGR03920   56 ppldldasLdeagVvDGdlLvLr 78  
                    l  ++ L++ g++DG+ L L+
  MMETSP1061-20121228|1655_1 1488 EELADAKKLSHYGIQDGEILQLE 1510
                  556677889***********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1722 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.72u 0.18s 00:00:00.89 Elapsed: 00:00:00.78
# Mc/sec: 2913.91
//
Query:       MMETSP1061-20121228|1663_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 1656.46
//
Query:       MMETSP1061-20121228|1669_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|1666_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-09   35.1   0.2    3.7e-09   34.1   0.0    1.6  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   9.1e-13   3.7e-09       9     112 ..      89     186 ..      81     239 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 9.1e-13
   TIGR00601   9 kqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiL.sDdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptpsatpasvaekksa 112
                  q+kf+i   +d tv   K+k ++ +    ++ +qq+Li+ G++L +D+ t+k+yk++  d +v +  k++ v ++++  +     a + + +++  s ++  + 
  MMETSP1061-20121228|1666_1  89 TQKKFPIPCRSDWTVETFKRKSAKIHK---VPPSQQRLIFRGRMLtNDEDTLKDYKLDTSDLIVHLFPKPRVVVTTSKRKQ----EAGSYGSNNPSGSNSHRRQR 186
                 689******************998888...**************945889********************99874443322....22222223444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.25s 00:00:00.58 Elapsed: 00:00:00.44
# Mc/sec: 1613.87
//
Query:       MMETSP1061-20121228|1674_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 698.44
//
Query:       MMETSP1061-20121228|1679_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 323.97
//
Query:       MMETSP1061-20121228|1671_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1959.53
//
Query:       MMETSP1061-20121228|1678_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-67  221.7   1.7    5.6e-65  216.0   1.2    2.2  1  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
    1.8e-05   22.4   0.2      0.005   14.4   0.0    2.3  2  TIGR03690 20S_bact_beta: proteasome, beta subunit
    5.2e-05   20.8   2.8      0.011   13.2   1.8    3.0  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.0   1.2   4.1e-68   5.6e-65       1     167 [.      67     250 ..      67     254 .. 0.91

  Alignments for each domain:
  == domain 1    score: 216.0 bits;  conditional E-value: 4.1e-68
   TIGR03692   1 ttilavrkngkvviagdGqvtlgetvlkenarkvrrly.................egkvlaGfaGstadaltLferfeekleeykgnlaraavelakdWrtdkvlrkLeallivadkeelllisGtgdviepeddviaiGsGgnyalaaaralleetelsaeeiaekalkiaadicvytneniv 167
                 ttil+vrkngkv + gdG v++g++++k na k++r++                 ++  l+GfaG+tada+tL+er+e kl+ey g+l+r++velak Wrtdk+lr+Lea livad++++l i+G+gdv+e  d++i++GsG+ yalaaaral++ +elsaee+a+ka+++a+d+cvytn+n+ 
  MMETSP1061-20121228|1678_1  67 TTILCVRKNGKVCMMGDGMVSMGNMIVKPNAVKIQRIFpkgglgstisnkeeddeQKATLVGFAGATADAFTLLERLEGKLDEYPGQLSRSCVELAKGWRTDKYLRRLEASLIVADERKSLEITGNGDVLEMTDGIISVGSGSPYALAAARALMSVEELSAEEVAQKAMDVASDMCVYTNKNFL 250
                 9**********************************9964333333343333322223579*************************************************************************************************************************986 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.6e-06     0.005       3      39 ..      64     100 ..      62     111 .. 0.87
   2 !    5.7   0.0    0.0017       2.3     135     169 ..     201     236 ..     184     245 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.6e-06
   TIGR03690   3 phgttivalaykgGvllaGdrratqGnliasrdvekv 39 
                  hgtti+++  +g v + Gd   ++Gn+i + +  k+
  MMETSP1061-20121228|1678_1  64 YHGTTILCVRKNGKVCMMGDGMVSMGNMIVKPNAVKI 100
                 69***************************98765554 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0017
   TIGR03690 135 eyesvGsGsvfakgalkklyk.edlseedavrvave 169
                 +  svGsGs +a +a + l + e+ls+e+ ++ a++
  MMETSP1061-20121228|1678_1 201 GIISVGSGSPYALAAARALMSvEELSAEEVAQKAMD 236
                 5679***********999986244555555544443 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.8   7.9e-06     0.011       1     139 [.      66     215 ..      66     255 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 7.9e-06
   TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkial..tiaGsvgdaq...slvrllkaeaklyelrrkk....kisvkalatllsnllksskflpflvqllvgGvdeegpklyslDplGsiiedk..ytatGsGspvalgv 139
                 gtT++ ++ + +v +  d  +s+gn++ + n+ K+ +i +k +l  ti+ +  d +   +lv +  a a+   l ++     +    +l++   +l k+ +   +l +l  + +  ++ k   +   G+++e +  ++++GsGsp+al+ 
  MMETSP1061-20121228|1678_1  66 GTTILCVRKNGKVCMMGDGMVSMGNMIVKPNAVKIQRIFPKGGLgsTISNKEEDDEqkaTLVGFAGATADAFTLLERLegklDEYPGQLSRSCVELAKGWRTDKYLRRLEASLIVADERKSLEITGNGDVLEMTdgIISVGSGSPYALAA 215
                 89************************************9887662244444433220113444444444433333333000023333444444455555555555555555555556666666666666655433466777777766664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1124.04
//
Query:       MMETSP1061-20121228|1680_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 2179.29
//
Query:       MMETSP1061-20121228|1685_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 413.97
//
Query:       MMETSP1061-20121228|1686_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.9   0.3        2.2    6.1   0.0    2.3  2  TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension


Domain annotation for each model (and alignments):
>> TIGR03595  Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0   0.00054       2.2      34      53 ..      53      72 ..      42      78 .. 0.82
   2 ?    5.2   0.0     0.001       4.2      35      52 ..      79      96 ..      69     102 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00054
   TIGR03595 34 grlarkLkklGveeaLrkaG 53
                  +++k++ lGv+ea +++ 
  MMETSP1061-20121228|1686_1 53 DDFNKKMRGLGVDEAWIDKQ 72
                569***********988775 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.001
   TIGR03595 35 rlarkLkklGveeaLrka 52
                 +++k+++lGv+++   a
  MMETSP1061-20121228|1686_1 79 DFNKKMRELGVDKEFTTA 96
                59**********997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 485.25
//
Query:       MMETSP1061-20121228|1683_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-24   82.3   0.0    1.3e-13   48.8   0.0    2.7  2  TIGR02246 TIGR02246: conserved hypothetical protein
     0.0025   16.2   3.2       0.25    9.8   0.1    2.8  2  TIGR03769 P_ac_wall_RPT: actinobacterial surface-anchored protein domain
  ------ inclusion threshold ------
      0.017   13.2   0.0       0.32    9.1   0.0    2.7  3  TIGR01374 soxD: sarcosine oxidase, delta subunit family


Domain annotation for each model (and alignments):
>> TIGR02246  TIGR02246: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   4.8e-11   6.5e-08       3     127 ..      36     158 ..      35     159 .. 0.80
   2 !   48.8   0.0   9.8e-17   1.3e-13       4     127 ..     175     293 ..     173     294 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 4.8e-11
   TIGR02246   3 eeairaLvarleaAwaagDaeafAnlFteDgvfvtvpGq.klkGreaIaaaleaflekpvkgtkvevdvievrvlgp..dlaivhaeatitatgkkraaaraavrltlvavka..dgrWllaadqntpvr 127
                 +e+++ L+ ++++A+a+ D + +A+ + e +++++++++ ++     I+ +++ fl+ +++g ++  + +++   g+  + a +  ++ +t+   + + a+++ r+t+v+ ka  d++W + +++++ ++
  MMETSP1061-20121228|1683_1  36 KEEVQGLFYKWNDALATLDSDNVAQRYGENALLLPTVSDtPRNDYASIKDYFDHFLKSKPQG-EILESFVQI---GDcgKWAQDNGIYEFTM---GATGAKVKGRYTFVYTKAggDDEWKISHHHSSQMP 158
                 589************************************88889999**************6.444444444...44457777777777765...4555566666666665554499*********9987 PP

  == domain 2    score: 48.8 bits;  conditional E-value: 9.8e-17
   TIGR02246   4 eairaLvarleaAwaagDaeafAnlFteDgvfvtvpGq.klkGreaIaaaleaflekpvkgtkvevdvievrvlgpdlaivhaeatitatgkkraaaraavrltlvavkadgrWllaadqntpvr 127
                 e+ raL++ +++A+a+ D++++A+ + +D+ +++++++ ++   eaI+ +++ fl+ +++g      vie  v+  d a  +  a+++  + + +  +++ r+++v+v +dg+W +a++++++++
  MMETSP1061-20121228|1683_1 175 EETRALFNLWNDALATLDPKKVAARYSKDAILLPTVSDtPRTTPEAIEDYFVHFLKSKPQG------VIEEGVTISDEANWAKDAGVYEFTMGATGDKVKGRYSFVYVFEDGEWKIAHHHSSVMP 293
                 7889**********************************899999****************7......666666667777888888899999999999*************************997 PP

>> TIGR03769  P_ac_wall_RPT: actinobacterial surface-anchored protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.3    0.0025       3.4      13      29 ..     117     133 ..     114     142 .. 0.84
   2 !    9.8   0.1   0.00018      0.25      11      29 ..     252     270 ..     247     278 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0025
   TIGR03769  13 GtYtltvratatltdGk 29 
                 G+Y++t+ at+ + +G 
  MMETSP1061-20121228|1683_1 117 GIYEFTMGATGAKVKGR 133
                 9**********999987 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00018
   TIGR03769  11 kPGtYtltvratatltdGk 29 
                  +G+Y++t+ at+++ +G 
  MMETSP1061-20121228|1683_1 252 DAGVYEFTMGATGDKVKGR 270
                 69***********999987 PP

>> TIGR01374  soxD: sarcosine oxidase, delta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.83   1.1e+03      26      41 ..      29      44 ..      13      49 .. 0.68
   2 ?    9.1   0.0   0.00023      0.32      34      64 ..      81     113 ..      61     117 .. 0.78
   3 ?    0.2   0.0      0.14   1.9e+02      31      52 ..     216     239 ..     202     260 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.83
   TIGR01374 26 pdpaeasdeeweeyly 41
                  pa++s+ee++  +y
  MMETSP1061-20121228|1683_1 29 TTPASISKEEVQGLFY 44
                4788999999887766 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00023
   TIGR01374  34 eeweeyl..ylRenpkGlleErWvHlsGCrkfl 64 
                  ++++y+  +l++ p+G + E +v ++ C+k+ 
  MMETSP1061-20121228|1683_1  81 ASIKDYFdhFLKSKPQGEILESFVQIGDCGKWA 113
                 34455544499*********************5 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.14
   TIGR01374  31 asdeeweeyl..ylRenpkGlleE 52 
                 +  e++e+y+  +l++ p+G++eE
  MMETSP1061-20121228|1683_1 216 TTPEAIEDYFvhFLKSKPQGVIEE 239
                 55677888876699999***9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1470.74
//
Query:       MMETSP1061-20121228|1684_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       570  (0.138957); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 1612.41
//
Query:       MMETSP1061-20121228|1692_1  [L=959]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (959 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 3330.99
//
Query:       MMETSP1061-20121228|1689_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 612.81
//
Query:       MMETSP1061-20121228|1696_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 666.23
//
Query:       MMETSP1061-20121228|1697_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|1699_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|1693_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-52  175.8   0.1    3.2e-52  175.4   0.0    1.2  1  TIGR00419 tim: triose-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.4   0.0   7.8e-56   3.2e-52      29     228 .]      77     285 ..      39     285 .. 0.86

  Alignments for each domain:
  == domain 1    score: 175.4 bits;  conditional E-value: 7.8e-56
   TIGR00419  29 eagvevavappfvdldvvkdeve.seiqvaAqnvdavksGaftGeisAemlkdlGakgvligHsErRsllkeadeliekkvarlkelglksvvCvgetleere.......aartinnvattaaaaAlepdvvAvEPveliGtGkpvskAeaevveksvrdhlkk.vskevaesvrvlyGasvtaaedaelaaqldvdGvLlasavlkae 228
                 +   ev+v ppf +++ v+d+ve + i+v+Aq +   ++Ga+tG++ A m++ +G+++vl gHsErR++++  d+ i+ kv ++ e g+k+++C+get+ e +       +a ++   +   +   + ++v+A+EPv++iGtG +    ea+  +++vr  l+   ++eva+ +r++yG+svt  +  el+a +++dG L+++a+l ae
  MMETSP1061-20121228|1693_1  77 PMCTEVVVFPPFPFISKVRDAVEeAGITVGAQSIFFEDKGAYTGSVAASMVESIGCEYVLCGHSERRTIFRDDDDAINRKVLKVLESGMKPILCIGETKGEYDlhikneiCAMQLRRDLAGVTKEQMADVVIAYEPVWAIGTGLVCGSQEANDTHGFVRTVLEAmYDEEVAQATRIQYGGSVTPDSVDELMAMPEIDGCLVGGASLVAE 285
                 34579******************899*************************************************************************999977666666666655444444445889******************************99998799***************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 1005.15
//
Query:       MMETSP1061-20121228|1698_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.47    8.3   4.4       0.12   10.2   0.9    1.5  2  TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family


Domain annotation for each model (and alignments):
>> TIGR03750  conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1      0.55   2.3e+03      32      39 ..      14      17 ..       4      31 .. 0.48
   2 ?   10.2   0.9   2.8e-05      0.12      15      52 ..     192     230 ..     190     241 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.55
   TIGR03750 32 vlglvlgl 39
                +    +g+
  MMETSP1061-20121228|1698_1 14 T----IGA 17
                1....111 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 2.8e-05
   TIGR03750  15 frGltadElvvaavvglvlglvlglllalllg.swalip 52 
                 f+Glta+E +++a++++ + + + +l++l++g +++ ++
  MMETSP1061-20121228|1698_1 192 FGGLTASESFAVAALAVFASMTVLFLALLACGfNIVDLC 230
                 79**************99999999999999884444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1367.41
//
Query:       MMETSP1061-20121228|1695_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1715.86
//
Query:       MMETSP1061-20121228|1702_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.3   0.1      0.081   10.1   0.1    1.8  2  TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit


Domain annotation for each model (and alignments):
>> TIGR02852  spore_dpaB: dipicolinic acid synthetase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0    0.0011       4.7     112     129 ..       8      25 ..       4      31 .. 0.86
   2 ?   10.1   0.1     2e-05     0.081      96     129 ..      17      50 ..      15      61 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0011
   TIGR02852 112 tlrnnkPvvlaistndal 129
                 +lr +k vvla   nd+ 
  MMETSP1061-20121228|1702_1   8 ELRKDKDVVLAAVNNDGW 25 
                 79**************85 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 2e-05
   TIGR02852  96 lanaitdspvlmaakatlrnnkPvvlaistndal 129
                 la   +d  +l  a  +l+n+k vvla   nd+ 
  MMETSP1061-20121228|1702_1  17 LAAVNNDGWLLHYASKELQNDKDVVLAAVGNDGR 50 
                 677788999999999*****************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|1703_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.68
# Mc/sec: 557.07
//
Query:       MMETSP1061-20121228|1704_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1183.19
//
Query:       MMETSP1061-20121228|1708_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 705.85
//
Query:       MMETSP1061-20121228|1709_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 557.95
//
Query:       MMETSP1061-20121228|1706_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-14   50.5   0.4    1.2e-13   49.1   0.1    1.7  2  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system
    0.00079   16.3   0.1     0.0013   15.6   0.1    1.2  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.46   9.4e+02      33      79 ..     164     210 ..     158     222 .. 0.70
   2 !   49.1   0.1   5.6e-17   1.2e-13      37     105 ..     236     307 ..     227     310 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.46
   TIGR02007  33 aeieiehacekscacttchvivrkGfdsleeasekeedlldkawGle 79 
                 +++++e a  k +      v+    + s e+ +e  ed + +a+ +e
  MMETSP1061-20121228|1706_1 164 ESVKVELARSKGKKMVGFWVLPPSAWASKEGDDESVEDDMRRAFRVE 210
                 55667777777777777777777777888888888777777777665 PP

  == domain 2    score: 49.1 bits;  conditional E-value: 5.6e-17
   TIGR02007  37 iehacekscacttchvivr.kGfdsleeasekeedlldkawGleaesrlscqavvad..edlvveipkysin 105
                 ie ac + +ac+tchv+v+ + f+ + +ase e d++d a+  + +srl+cq+++    e++v +ip+ + n
  MMETSP1061-20121228|1706_1 236 IECACSGIMACSTCHVVVQsEWFEKVGDASEAELDMIDLAYNPKETSRLGCQVILKPelENVVFKIPRGANN 307
                 899***************84679******************************9976236899999987666 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   6.2e-07    0.0013      62     117 ..     235     295 ..     229     305 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 6.2e-07
   TIGR01941  62 fissacGGggscgqcrvrvv....egggeilptekshisk.reakegwrlscqvkvkedle 117
                 +i  ac G  +c+ c+v+v+    e  g+  ++e+++i    + ke  rl cqv +k +le
  MMETSP1061-20121228|1706_1 235 MIECACSGIMACSTCHVVVQsewfEKVGDASEAELDMIDLaYNPKETSRLGCQVILKPELE 295
                 6889***************833334689999******98615789**********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 1165.90
//
Query:       MMETSP1061-20121228|1711_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-11   41.5   0.3     0.0077   13.8   0.0    4.9  5  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   4.8e-05       0.2       1      25 [.       4      27 ..       4      28 .. 0.91
   2 !   13.8   0.0   1.9e-06    0.0077       4      25 ..      46      66 ..      45      67 .. 0.86
   3 !   11.4   0.0   1.1e-05     0.043       1      22 [.      68      88 ..      68      89 .. 0.95
   4 ?    0.3   0.2     0.033   1.4e+02       1       9 [.     119     127 ..     119     128 .. 0.81
   5 ?   -2.2   0.1       0.2   8.2e+02      10      16 ..     161     167 ..     160     167 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 4.8e-05
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                +F++ s++++ ++  +++++V  M 
  MMETSP1061-20121228|1711_1  4 LFAHASAFNQ-PINDWNVGSVQKMQ 27
                59999*****.**********9996 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.9e-06
   TIGR02167  4 gCssLtsLDlSnfdTsnVTnMs 25
                g s++++ ++ n+++s+V  M 
  MMETSP1061-20121228|1711_1 46 GASAFNQ-PIGNWNVSSVRRMQ 66
                6788888.9***********97 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 1.1e-05
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVT 22
                MF++ s + + +lS +d++ VT
  MMETSP1061-20121228|1711_1 68 MFRSASGFDQ-PLSDWDVARVT 88
                99******9*.*********** PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.033
   TIGR02167   1 MFsgCssLt 9  
                 MF+g s+++
  MMETSP1061-20121228|1711_1 119 MFNGASNFN 127
                 999999876 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 0.2
   TIGR02167  10 sLDlSnf 16 
                  L++ ++
  MMETSP1061-20121228|1711_1 161 KLNVGSW 167
                 699*999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.10s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 1050.17
//
Query:       MMETSP1061-20121228|1713_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 908.09
//
Query:       MMETSP1061-20121228|1717_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|1718_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 1419.62
//
Query:       MMETSP1061-20121228|1726_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         6  (0.0014627); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 439.96
//
Query:       MMETSP1061-20121228|1721_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.3    6.1   6.3        1.8    6.4   0.1    3.2  3  TIGR01149 mtrG: tetrahydromethanopterin S-methyltransferase, subunit G


Domain annotation for each model (and alignments):
>> TIGR01149  mtrG: tetrahydromethanopterin S-methyltransferase, subunit G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1   0.00044       1.8      12      47 ..      99     134 ..      96     135 .. 0.94
   2 ?    3.2   0.1    0.0044        18      19      39 ..     132     152 ..     131     164 .. 0.82
   3 ?   -1.2   0.6      0.11   4.4e+02      41      65 ..     319     343 ..     286     346 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00044
   TIGR01149  12 defnevkkrLDeieekvefvngEvaqriGkkvGRDi 47 
                 +++++vk+ L ei +++e  ++  a r+G   G+D+
  MMETSP1061-20121228|1721_1  99 GDVDQVKSILQEIHRQMEDLQALHASRVGSVFGKDL 134
                 68999****************************996 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0044
   TIGR01149  19 krLDeieekvefvngEvaqri 39 
                 k LD++e+++e++  +++ r+
  MMETSP1061-20121228|1721_1 132 KDLDDMENRIENMTRDITDRF 152
                 679*********999988776 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.11
   TIGR01149  41 kkvGRDiGiLYGlviGllllliyvl 65 
                 +k  R +  +  lvi +++l+++ +
  MMETSP1061-20121228|1721_1 319 QKNARPMKCIVCLVITIFILFVILI 343
                 4444555555556666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1919.34
//
Query:       MMETSP1061-20121228|1720_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-05   20.1   0.0     0.0001   19.5   0.0    1.3  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   2.5e-08    0.0001     122     176 ..      95     149 ..      73     150 .] 0.93

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.5e-08
   TIGR03516 122 edlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllnik 176
                 +++i+G  ++l+lm eg +  +++Ps  +yG  G    i     +  t+ ll+ik
  MMETSP1061-20121228|1720_1  95 KQVIKGWTEALQLMDEGAKWELYIPSELGYGDRGAGSSIPGGAVLVFTLELLEIK 149
                 689***********************************99999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|1731_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|1734_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 361.54
//
Query:       MMETSP1061-20121228|1732_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    7.8   8.1       0.15    7.8   5.6    1.0  1  TIGR02103 pullul_strch: alpha-1,6-glucosidases, pullulanase-type


Domain annotation for each model (and alignments):
>> TIGR02103  pullul_strch: alpha-1,6-glucosidases, pullulanase-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   5.6   3.6e-05      0.15     590     637 ..       4      51 ..       1      58 [] 0.84

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 3.6e-05
   TIGR02103 590 qpnekaesdaasklkalaeadlvrlGlagnLkdyvlidkeGkavkGee 637
                 ++n+++++++++k++++ ++++ + G agn kd  l d +Gk+++ ++
  MMETSP1061-20121228|1732_1   4 NNNNNNNNNNNKKQGKKDATEHEKNGKAGNQKDAGLADAKGKEKRNNH 51 
                 45666888888999999999***********************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.27
# Mc/sec: 283.53
//
Query:       MMETSP1061-20121228|1730_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.30
# Mc/sec: 197.98
//
Query:       MMETSP1061-20121228|1729_1  [L=671]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-24   83.7   0.0    7.3e-24   82.4   0.0    1.7  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    4.1e-10   36.8   0.0    0.00036   17.2   0.0    3.1  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    3.7e-07   26.7   0.0    6.6e-06   22.6   0.0    2.2  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    2.6e-06   24.2   0.0     0.0059   13.2   0.0    3.6  3  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1   0.8       2.9     3e+03     168     189 ..     103     120 ..      94     138 .. 0.37
   2 !   82.4   0.0   7.1e-27   7.3e-24       7     308 ..     184     535 ..     175     545 .. 0.82

  Alignments for each domain:
  == domain 1    score: -5.1 bits;  conditional E-value: 2.9
   TIGR03169 168 lkkrglkaevslaseakllqal 189
                  ++r+l+  ++l+  +kl q++
  MMETSP1061-20121228|1729_1 103 QQQRPLQ--LKLQ--QKLQQHT 120
                 2222222..3222..2222221 PP

  == domain 2    score: 82.4 bits;  conditional E-value: 7.1e-27
   TIGR03169   7 gGHahalvLkklamkpkagvrvtlispssttlYSGMlPgliaghysedeiridlrrlaekagaelvedeatgldleerkvllae....re.eisydvlsldvGsttalseve....gaadkavpvKPleellaaweellekaka.........seetk.slavvGgGaagvElala........lrkrlkkrglkaevsla.seakllqalsakvrklvkrllakrgievlekeevtevede..............................alllaegetleadavllatgakapawLaesglsldedGflavkktLqslsh.pevFaaGDcavikeaprpkaGVyAVrqakiLaaNLea 308
                 gGH+ a  L       k++ +v +isp+++ l++ +lP++  g+ + + i+  +r +  k  +e ++++a gld+ +++v++++    ++ +++yd+l + +G +t++  +     ++ ++++  K l+++   ++++le+ ++         +++   +++vvGgG  + E            + + +++ + + +v+l+ +++ ll ++++++ ++  ++l+ r+++v+  ++vt +++                                 + ++g++l++ ++++++g  + ++++esgl+l++ G+++v++ L+++++  ++Fa GDca+++++ +p     A +qa  L +  ++
  MMETSP1061-20121228|1729_1 184 GGHTVAKRL------DKSKFDVRVISPANHFLFTPLLPSTAVGTLEFRAIQEPVRTI--KGLGEYYQAKALGLDTTKKVVHCEDlfkkHPfPVKYDYLLIAAGNKTNTFGIPgvekHEGEAVLFLKHLYHARLIRNRILECFERasnnsvppeERSRLlNFVVVGGGPTSCEFTTElydfihddVSEWYPDLKGEIKVTLVeAGPGLLGNFHKSLSDYYLHNLRTRNVDVRLVTAVTGITERrfaaasesasesasesashsktetegrsytVATFDDGTELPFGMMVWSAGLAPVKFVEESGLPLER-GRIKVDDYLRVPNSkGRIFAFGDCAMVADQGLPPTATVAEQQAYYLSDSFNH 535
                 444444433......356899*******************************99986..67799*****************97533213335**************9987776666777778888888766544444444332200011111112222589************9998888777777778888888889998999************************************88***************************99666679*****************************98.***********975169****************9999999999888876665 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.9e-07   0.00071       1     144 [.     175     313 ..     175     432 .. 0.72
   2 !   17.2   0.0   3.5e-07   0.00036     216     308 ..     440     528 ..     394     540 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.9e-07
   TIGR03385   1 kivivGgvaaGasaAsrvrRLkk.esdiivfekteivsfanCglPYfvggviedrkkllaytpekfiekkkidvktksevikvdkeektvvvknnktnekyeesyDkLilstGAkpkileiegi...eldavftlrnledaeaikkyl 144
                 ++v++G++ +G ++A    RL+k + d+ v+   +   f++  lP    g +e   ++++ ++ ++   k++    +++   +d+ +k+v   +  +++ +   yD+L++++G k+++  i+g+   e +av  l++l  a  i++ +
  MMETSP1061-20121228|1729_1 175 RVVVLGTGWGGHTVAK---RLDKsKFDVRVISPANHFLFTPL-LPSTAVGTLEF--RAIQEPVRTI---KGLGEYYQAKALGLDTTKKVVHCEDLFKKHPFPVKYDYLLIAAGNKTNTFGIPGVekhEGEAVLFLKHLYHARLIRNRI 313
                 6899999999999985...55542679999999999999885.78777665554..3555555555...78888889999999***************************************99544467899999999999998776 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 3.5e-07
   TIGR03385 216 svegeekve.vltsgkvyqaDlvilavGvkPnselikssqlklgkkGaikvnekfqt..sveniyaiGDvaesknivtkkeelvPlAwaanklgsi 308
                 + eg+   + ++ +g +  + +++ + G+ P ++++++s+l l+ +G ikv+++++   s   i+a GD+a + +     + l P A++a+++++ 
  MMETSP1061-20121228|1729_1 440 ETEGRSYTVaTFDDGTELPFGMMVWSAGLAP-VKFVEESGLPLE-RGRIKVDDYLRVpnSKGRIFAFGDCAMVAD-----QGLPPTATVAEQQAYY 528
                 34555544449********************.89********95.8*******9985337789*******98765.....3344566666666655 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.013        13      72     120 ..     240     293 ..     176     342 .. 0.78
   2 !   22.6   0.0   6.5e-09   6.6e-06     211     306 ..     441     533 ..     425     578 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.013
   TIGR02374  72 lvnervikidreeksvitda..grt...lsyDkLilatGsypfilPipGaDkkg 120
                 + + +++ +d+ +k+v+ +   ++    ++yD L++a+G  +    ipG +k++
  MMETSP1061-20121228|1729_1 240 YYQAKALGLDTTKKVVHCEDlfKKHpfpVKYDYLLIAAGNKTNTFGIPGVEKHE 293
                 666778888999999987642222222268*******************99875 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 6.5e-09
   TIGR02374 211 esvekaerlrfkDGssleadlvvlaaGirPrdeLaaeaGlkvndrrGiivndsmqt..sdPdiyavGecaehngrvyGLvaPlyeqakvladhllgve 306
                  ++       f DG++l  +++v +aG+ P  ++  e+Gl+++ r+ i v+d+++   s+  i+a G+ca + ++  GL  P  + a+  a  l ++ 
  MMETSP1061-20121228|1729_1 441 TEGRSYTVATFDDGTELPFGMMVWSAGLAPV-KFVEESGLPLE-RGRIKVDDYLRVpnSKGRIFAFGDCAMVADQ--GL-PPTATVAEQQAYYLSDSF 533
                 3355566678********************5.7889******9.999******996337889********98775..33.455555555555555555 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.0    0.0052       5.4       3      31 ..     175     203 ..     173     208 .. 0.91
   2 ?   -2.9   0.0      0.43   4.4e+02     255     273 ..     267     285 ..     231     295 .. 0.74
   3 !   13.2   0.0   5.7e-06    0.0059     193     326 ..     370     530 ..     330     544 .. 0.60

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0052
   TIGR01350   3 dvvviGgGpgGYvaAiraaqlglkvalve 31 
                  vvv+G+G gG + A r  + ++ v ++ 
  MMETSP1061-20121228|1729_1 175 RVVVLGTGWGGHTVAKRLDKSKFDVRVIS 203
                 59*********************999985 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.43
   TIGR01350 255 tleaekvLvavGrkpnlee 273
                  ++++++L+a G k+n+ +
  MMETSP1061-20121228|1729_1 267 PVKYDYLLIAAGNKTNTFG 285
                 4678889999999888764 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 5.7e-06
   TIGR01350 193 Gvkvtvielldrilpaldaevskvlkkklkkkgvkiltnakvtevekeedevv................veakkkevetleae........kvLvavGrkpnleelgleklgveldergaikvdeelrtnvpg..iyaiGDvi.....gklmLAhvAskegvvaa 326
                  +kvt++e+ + +l ++ + +s+   ++l++++v++   + vt +++++ +                  +e++++  ++ + +         ++ + G  p      +e+ g+ l++ g+ikvd++lr+  ++  i+a GD++     g +  A vA++++++  
  MMETSP1061-20121228|1729_1 370 EIKVTLVEAGPGLLGNFHKSLSDYYLHNLRTRNVDVRLVTAVTGITERRFAAAsesasesasesashskTETEGRSYTVATFDdgtelpfgMMVWSAGLAPVK---FVEESGLPLER-GRIKVDDYLRVPNSKgrIFAFGDCAmvadqGLPPTATVAEQQAYYLS 530
                 479**********************************999999655554333323333333333222222222221111121111111111233344443322...36777787766.99999999998655446999999852222133455777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.61
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|1736_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.09s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 898.78
//
Query:       MMETSP1061-20121228|1737_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 361.23
//
Query:       MMETSP1061-20121228|1742_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-194  645.5   0.0   1.3e-194  645.3   0.0    1.0  1  TIGR00503 prfC: peptide chain release factor 3
    1.3e-65  219.7   0.0    1.7e-65  219.3   0.0    1.0  1  TIGR00484 EF-G: translation elongation factor G
    1.5e-36  123.6   0.0    2.5e-31  106.4   0.0    2.1  2  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    2.7e-36  122.9   0.0    1.1e-28   97.8   0.0    2.1  2  TIGR01393 lepA: GTP-binding protein LepA
    1.2e-25   87.5   0.0    2.8e-21   73.1   0.0    2.1  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    1.4e-22   78.1   0.0    2.2e-22   77.4   0.0    1.3  1  TIGR00231 small_GTP: small GTP-binding protein domain
    3.1e-17   60.0   0.0    1.2e-16   58.1   0.0    1.7  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    8.6e-15   52.2   0.0      7e-14   49.2   0.0    1.9  2  TIGR00485 EF-Tu: translation elongation factor Tu
    9.5e-12   42.5   0.0    1.4e-11   42.0   0.0    1.1  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    2.2e-11   41.0   0.0    3.3e-11   40.4   0.0    1.2  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    1.2e-10   38.3   0.0    2.1e-10   37.5   0.0    1.3  1  TIGR00491 aIF-2: translation initiation factor aIF-2
    1.9e-10   38.0   0.0    6.8e-10   36.1   0.0    1.9  1  TIGR00487 IF-2: translation initiation factor IF-2
    1.2e-06   25.6   0.0    0.00043   17.2   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
  ------ inclusion threshold ------
      0.024   11.3   0.0       0.04   10.6   0.0    1.3  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
       0.03   11.2   0.0       0.06   10.2   0.0    1.4  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
      0.046   10.8   0.0       0.13    9.3   0.0    1.6  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  645.3   0.0  5.1e-197  1.3e-194       5     522 ..      50     588 ..      46     593 .. 0.94

  Alignments for each domain:
  == domain 1    score: 645.3 bits;  conditional E-value: 5.1e-197
   TIGR00503   5 lkevdkrrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplelldevenelkintaaitypiGtGklfkGvyhllkdeiylye.sGkgstikavrvvkalddpeldaavGed.laqelrdelelveeasaefdkeavlaGeltpvffGtalgnfGvdllldallqyaakpear.....ds......dtrtveaaeekfsGfvfklqanmdpkhrdrvaflrvvsGkyekdmklkhvr..tgkdvvlsdalkllagdresveeayaGdiiGlhnhGtiqiGdtvtqG.eklkftgipnfapelfrrlrlkdplkqkqllkGlvelseeGavqvlrslden...dlivaavGvlqfdvvvarlkeeynveavyesvnvalarwveeadakkleef...krknesvlaldggdalvylaksmvnlelaqeryldvkls 522
                  +e+d+rr++aiishpd+Gktt+tek+llyG+a+q+aGav+ +  qr ++sd+memek+rGisi+++v++fdy++  +n+ldtpGh+dfsedtyr+l+a+d+a+m++daakG+e +trkl+ev+rlr lp++tf nk+dr++++p el+d++++e+++++ +i +piG G++fkGv ++l++ ++ly+   k + + +v  v   +   l+ ++ +d l ++l ++ el++e  + +d e vl+Ge tp+ffG+a++nfGv+l+ld +l+  +kp+ar     ++      d + v + +e+f+Gfvfk qan+dpkhrdr+a++rvvsG yek+mk+ h r   gk+  l++a+ l+  dr+ ve+ay+Gd+iG++n+G++ iGdt+ +G e++ f+gip+f+pe f+++r+ +p+ +k ++kG+ +l  eGavq lr  +++    l++aavG+lqf+vv+arl++ey+ve+++e+++++larw + + +++++++   ++++   +++d+++ +v+l+++ +      e+  d++l+
  MMETSP1061-20121228|1742_1  50 SNEIDRRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRQKAEQRATQSDFMEMEKERGISISSTVMNFDYEGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLPLFTFCNKMDRPSLSPYELMDQIQEEFNLESFPILWPIGDGDRFKGVLDRLEEVVHLYQkPVKRGGKAEVIEVPFSEADRLQELIADDeLFEKLLEDKELLDELIEPLDMERVLDGEQTPLFFGSAMTNFGVQLFLDKFLDMGTKPTARfavsgQAksdgsrDEQPVPPEHEEFTGFVFKTQANLDPKHRDRLAYVRVVSGVYEKGMKVGHSRskAGKKYNLAQAQALFGSDRSTVEIAYPGDVIGINNPGSFAIGDTLFTGsERVAFPGIPSFSPEKFAYIRSPNPSDYKSFRKGIDQLLAEGAVQALRQRNDDgggPLMLAAVGQLQFEVVQARLQNEYKVESILEPLGYSLARWADGG-WDAVDKAdadGKLFGIMIVQDRWERPVLLFRNDWKAASLMEEEKDLQLK 588
                 589*****************************************************************************************************************************************************************************************66777888888888888888899988876599*******************************************************998444442122222356679999****************************************9884469*****************************************8777589*********************************************99888777799*************************************998.98888873336899****************************9**9986 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.3   0.0   6.5e-68   1.7e-65       5     472 ..      51     523 ..      47     527 .. 0.90

  Alignments for each domain:
  == domain 1    score: 219.3 bits;  conditional E-value: 6.5e-68
   TIGR00484   5 vdleklrniGisahidaGktttterilfytgkihkigevh....dGaatmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlksrldvnavplqlpiGaedkfeGvidlvkkkayffe..edkgekaeekeiPedlkeeakelreklveavaeldeelmekyleGeeltieeikkairkgvlalelvpvlvGsafknkGvqllldavvdylPsPvdvkaikaidedt.ekeielkasddepfvalafkvatd...pfvgkltfvrvysGvlksGsevlnsrk..ekkervgrlvkmhankreeieevraGdiaaliGlkdtttGdtlcdekaevilesmefpePvislavePktkadqekmgialgklaeedP..tfkvftdeesgqtiiaGmGelhldiivdrlkrefkvev 472
                  ++++ rn+ i +h d+Gktt+te++l+y g   + g v+    + a++ d+me ekerGi+i+s+  +  ++++r+n++dtPGh df+ +  r+l   d a+++lda  G+epq+  ++   +  ++P   f nkmd+    +++ ++q+++ +++++ p+  piG  d+f+Gv+d +++++  ++   ++g kae+ e+P    ++   l+    e +  +d+el ek le +el  e i+    ++vl+ e +p++ Gsa+ n Gvql+ld  +d    P+   a+ +  + +  ++ +    ++e+f+++ fk + +   ++  +l++vrv sGv ++G +v  sr    kk  +++   +   +r  +e  + Gd++ +      + Gdtl   ++ v +  +    P     ++  + +d +   + + +l  e    +++   d+  g  ++a +G+l ++++  rl+ e+kve 
  MMETSP1061-20121228|1742_1  51 NEIDRRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAVRqkaeQRATQSDFMEMEKERGISISSTVMNFDYEGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLPLFTFCNKMDRPSLSPYELMDQIQEEFNLESFPILWPIGDGDRFKGVLDRLEEVVHLYQkpVKRGGKAEVIEVPFSEADR---LQ----ELI--ADDELFEKLLEDKELLDELIEPLDMERVLDGEQTPLFFGSAMTNFGVQLFLDKFLDMGTKPTARFAVSGQAKSDgSRDEQPVPPEHEEFTGFVFKTQANldpKHRDRLAYVRVVSGVYEKGMKVGHSRSkaGKKYNLAQAQALFGSDRSTVEIAYPGDVIGINNPGSFAIGDTLFTGSERVAFPGIPSFSPEKFAYIRSPNPSDYKSFRKGIDQLLAEGAvqALRQRNDDGGGPLMLAAVGQLQFEVVQARLQNEYKVES 523
                 57899********************************9985443345789****************************************************************************************************************************************9556788888888888654443...33....333..489************************************************************999999876553666677778899********97543336899******************88765116899999999******************999999999****************9998889888889988999999999999999888752378999999999*************************96 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.0   9.9e-34   2.5e-31       2     144 ..      57     205 ..      56     209 .. 0.92
   2 !   15.2   0.0     4e-06     0.001     211     296 ..     365     449 ..     343     457 .. 0.84

  Alignments for each domain:
  == domain 1    score: 106.4 bits;  conditional E-value: 9.9e-34
   TIGR01394   2 rniaiiahvDhGkttlvDklL......kqsgvlrekeeveervmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLf 144
                 rn+aii+h D Gktt+ +klL      +q+g++r+k e + +  D  ++e+erGi i + +   +y+++++ni+DtPGh Df  +  r l   d +++l Da++G  pqtr   + +   gl      nk+Drp+  p e +d++ + f
  MMETSP1061-20121228|1742_1  57 RNLAIISHPDSGKTTMTEKLLlyggalQQAGAVRQKAEQRATQSDFMEMEKERGISISSTVMNFDYEGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLPLFTFCNKMDRPSLSPYELMDQIQEEF 205
                 9******************963333336778888888888888999***********************************************************************99***********************9987755 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 4e-06
   TIGR01394 211 deylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdivavaGledieigetiadaeeaealpll 296
                  ++  r+a +rv +G+  kg++v   ++ ++ +k  +++  a  g +r++++ a  Gd++ +    ++ ig+t+ + +e  a+p +
  MMETSP1061-20121228|1742_1 365 PKHRDRLAYVRVVSGVYEKGMKVGHSRS-KAGKKYNLAQAQALFGSDRSTVEIAYPGDVIGINNPGSFAIGDTLFTGSERVAFPGI 449
                 36788******************98765.566778899999999******************************999999988866 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   4.2e-31   1.1e-28       2     182 ..      55     239 ..      54     255 .. 0.83
   2 !   23.1   0.0   1.8e-08   4.5e-06     202     363 ..     367     524 ..     343     530 .. 0.82

  Alignments for each domain:
  == domain 1    score: 97.8 bits;  conditional E-value: 4.2e-31
   TIGR01393   2 kirnfsiiahidhGkstladrll......ektkavser.elkeqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieeviGldaeeailv..saktGigieelleaivkkvpaP 182
                 + rn++ii+h d Gk+t++++ll      ++++av ++ e+++   d +++e+erGi i ++ ++++y     e y ln++dtPGh dfs +  r+laa++ a++l+daa+G+e qt   + ++  + l +    nk+d Ps ++ ++ ++i+e   l++  ++     +   +g+ + le++v+   +P
  MMETSP1061-20121228|1742_1  55 RRRNLAIISHPDSGKTTMTEKLLlyggalQQAGAVRQKaEQRATQSDFMEMEKERGISISSTVMNFDY-----EGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLPLFTFCNKMDRPSLSPYELMDQIQEEFNLESFPILWPigDGDRFKGVLDRLEEVVHLYQKP 239
                 569******************9722222255555555425566778**************99998888.....68******************************************9988888899****************************99998877653113455567777777777766666 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1.8e-08
   TIGR01393 202 yrGvvvyvrvveGkikkgdkikll..stgkeyeveevgvltpklvkeeelkaGevGyliagikdvkdvkvGdtitsvkkpakealpGfkkvkpvvfaglyPidsedyeelrdaleklklndasltyekesskalGfGfrcGflGllhleviqerlerefdldli 363
                 +r  ++yvrvv+G  +kg+k+     ++gk+y++ +  +l  + +++  ++    G +  gi +     +Gdt+ + ++++  a+pG     p  fa +   + +dy+++r+ +++l l + +++  ++     G  +    +G l +ev+q rl+ e++++ i
  MMETSP1061-20121228|1742_1 367 HRDRLAYVRVVSGVYEKGMKVGHSrsKAGKKYNLAQAQALFGSDRST--VEIAYPGDV-IGINNPGSFAIGDTLFTGSERV--AFPGIPSFSPEKFAYIRSPNPSDYKSFRKGIDQL-LAEGAVQALRQRNDDGGGPLMLAAVGQLQFEVVQARLQNEYKVESI 524
                 567789***************7651156999*999887766555444..444444443.59************98877765..689999999999*********************9.6667777777777777888999********************9877 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   1.1e-23   2.8e-21      16     150 ..      53     189 ..      46     206 .. 0.79
   2 !   12.1   0.0   3.1e-05    0.0078     301     457 ..     366     524 ..     353     534 .. 0.83

  Alignments for each domain:
  == domain 1    score: 73.1 bits;  conditional E-value: 1.1e-23
   TIGR00490  16 pefirnigivahidhgkttlsdnllagagmiseela....geql..fldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkp.vlfinkvdr 150
                  ++ rn+ i++h d gktt++++ll   g + +  a     eq+    df e e+ergi+i+++   m  +yeg  y +n++dtpgh df  d  ra+ a d ai++++a +g+ pqt  ++    + +  p   f nk+dr
  MMETSP1061-20121228|1742_1  53 IDRRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAvrqkAEQRatQSDFMEMEKERGISISST--VMNFDYEG--YRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVC-RLRGLPlFTFCNKMDR 189
                 5788*******************99776666655541111233311579***********9864..57788887..99****************************************9877655.5555551579999999 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.1e-05
   TIGR00490 301 khagevavgrlysgaikkgsevylvdska..kariqqvgvymgpervevdeipagnivavvglkeavageticstdkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkve.inee.tgehlisgmgelhleiivkkirekagveve 457
                 kh   +a  r+ sg  +kg++v    ska  k ++ q    +g +r  v+    g+++ +      + g+t+ + ++++ af +i  +s       i + n+ d   + + + ++  e     +   n++  g  +++ +g+l +e++  + +++++ve +
  MMETSP1061-20121228|1742_1 366 KHRDRLAYVRVVSGVYEKGMKVGHSRSKAgkKYNLAQAQALFGSDRSTVEIAYPGDVIGINNPGSFAIGDTLFTGSERV-AFPGIPSFSP-EKFAYIRSPNPSDYKSFRKGIDQLLAEGAVQALRqRNDDgGGPLMLAAVGQLQFEVVQARLQNEYKVESI 524
                 6778899***************98888752266788999999*****************************88777776.8*****9995.5556799********99999999999987655541344415567789*******************9865 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   8.5e-25   2.2e-22       2     142 ..      55     211 ..      54     230 .. 0.92

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 8.5e-25
   TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskp.......gvtrdyvteqieedGkt............ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd....dlktkvkslfaklnae 142
                 ++++++i+ h+d+GK+t++++ll + ++ +++++        +t+++ +e ++e+G+             y++n+lDT+G++df        ++++r l  +d +i++ld+ +gle+qt+++++ ++  g p+  + nK+D  +    +l  + +++f+  ++ 
  MMETSP1061-20121228|1742_1  55 RRRNLAIISHPDSGKTTMTEKLLLYGGALQQAGAvrqkaeqRATQSDFMEMEKERGISisstvmnfdyegYRLNILDTPGHQDF-------SEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLPLFTFCNKMDRPSlspyELMDQIQEEFNLESFP 211
                 5789**********************99999988889999999*****************************************.......***************************************************9988887777777777776665 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   4.5e-19   1.2e-16       8     156 ..      57     192 ..      52     207 .. 0.87
   2 ?   -1.2   0.0      0.45   1.2e+02     248     293 ..     375     426 ..     372     430 .. 0.61

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 4.5e-19
   TIGR00483   8 lnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvny 156
                  n+a+i h dsgk+t++ +ll+  ga+++     ++++ae++       a   d ++ e+erg++i  + + f+ + y++ i+d+pgh+df  +     + ad a++++++ +g    +pqtr+   ++r  g+  l    nkmd+   
  MMETSP1061-20121228|1742_1  57 RNLAIISHPDSGKTTMTEKLLLYGGALQQAG--AVRQKAEQR-------ATQSDFMEMEKERGISISSTVMNFDYEGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKG---LEPQTRKLFEVCRLRGLP-LFTFCNKMDRPSL 192
                 599**********************997665..457778777.......334577899*****************************************************999...9*****999999999986.6677899998655 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.45
   TIGR00483 248 rvetgvlkkgekvvfe..pagvsgevksie....mhheqieqaepgdnigfn 293
                 rv +gv  kg+kv      ag   ++   +        ++e a+pgd ig+n
  MMETSP1061-20121228|1742_1 375 RVVSGVYEKGMKVGHSrsKAGKKYNLAQAQalfgSDRSTVEIAYPGDVIGIN 426
                 67777777777776541145554444333211113567899999***99998 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   2.7e-16     7e-14      13     153 ..      57     204 ..      50     210 .. 0.82
   2 ?    0.4   0.1      0.18        46     147     179 ..     276     308 ..     257     322 .. 0.61

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 2.7e-16
   TIGR00485  13 vnvgtighvdhgkttltaaitt...vlakegk...aaakkydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdl..vddeellelvele 153
                  n+  i h d gktt+t  +     +l++ g     a ++  + d    ek+rgi+i+++ ++++ e      +d pgh d+  +     a  d ai+++ aa g  pqtr+   ++r  g+p l  f nk+d   ++  el++ +++e
  MMETSP1061-20121228|1742_1  57 RNLAIISHPDSGKTTMTEKLLLyggALQQAGAvrqKAEQRATQSDFMEMEKERGISISSTVMNFDYEGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLP-LFTFCNKMDRpsLSPYELMDQIQEE 204
                 58999************87643222555555411123344567899999**************************************************************************.678*****96224555777777766 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.18
   TIGR00485 147 lelvelevrellseydfpgddvpivrgsalkal 179
                  el+++ +  l  e  ++g+++p+  gsa+  +
  MMETSP1061-20121228|1742_1 276 KELLDELIEPLDMERVLDGEQTPLFFGSAMTNF 308
                 223333333444566789***********9865 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   5.3e-14   1.4e-11      10     161 ..      66     206 ..      59     212 .. 0.83

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 5.3e-14
   TIGR02034  10 ddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdyd.eevfeeikkdyl 161
                 d Gk+t+  +ll    ++   q  a+++++++++t+          d ++ e+e+gi i  +   f+ +  ++ + dtPGh+ +  ++  + ++ad a++l+da kG+  qtr+   ++ l G+  +    nk+d    +  e +++i+++++
  MMETSP1061-20121228|1742_1  66 DSGKTTMTEKLLLYGGALQ--QAGAVRQKAEQRATQS---------DFMEMEKERGISISSTVMNFDYEGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLPLFT-FCNKMDRPSLSpYELMDQIQEEFN 206
                 5666666666666666553..5556666666666666.........66899************************************************************************98665.57****887762478889998886 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.3e-13   3.3e-11      28     116 ..     103     190 ..      59     208 .. 0.90

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 1.3e-13
   TIGR00475  28 lPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrv 116
                 +  Ek RG++i      +++e ++l+++D PGH+ f +    +++++d+a+++ da  G+ +qt+    v +l g++ l    +K+Dr 
  MMETSP1061-20121228|1742_1 103 MEMEKERGISISSTVMNFDYEGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLP-LFTFCNKMDRP 190
                 5569*************************************************************************.88899****95 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   8.1e-13   2.1e-10       7     133 ..      59     189 ..      55     195 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 8.1e-13
   TIGR00491   7 vavlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvik.....rlcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
                 +a++ h d Gktt+ +k+     a ++aG + q+        d ++      ++      ++ d +   l ++dtPGh+ f++   r  a ad ai+++d   G++pqt    ++ r +  P+    nk+dr
  MMETSP1061-20121228|1742_1  59 LAIISHPDSGKTTMTEKLLLYGGALQQAGAVRQKAEQRATQSDFMEmekerGISISS-TVMNFDYEGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLPLFTFCNKMDR 189
                 57899****************************987655555554411110233322.2566777777799************************************************************8 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   2.7e-12   6.8e-10     136     213 ..     126     203 ..      32     214 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 2.7e-12
   TIGR00487 136 kitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpeanpDrvkqelse 213
                  +  lDtPGh+ f++   r   ++D +++ + a  G++pqt    e  +  + P+  + nk+D+p+  p  ++++++e
  MMETSP1061-20121228|1742_1 126 RLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLPLFTFCNKMDRPSLSPYELMDQIQE 203
                 6789*****************************************************************999999875 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0041         1     142     196 ..      27      77 ..      18      92 .. 0.80
   2 !   17.2   0.0   1.7e-06   0.00043      50     121 ..     127     190 ..     103     243 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0041
   TIGR03594 142 SaehgrgikdLldeileelpeeeeeeeeeeeeepikiaiiGrpNvGKStLvNall 196
                 S+ hg   ++L+++ +e+  ++ ++e ++    + ++aii  p +GK t++ +ll
  MMETSP1061-20121228|1742_1  27 SSRHGASSSRLYNAETESSVAAPSNEIDR----RRNLAIISHPDSGKTTMTEKLL 77 
                 77888888888888777766665544444....579**************99987 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 1.7e-06
   TIGR03594  50 filiDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnk 121
                 ++++DT+G         ++ +e +  a++ ad  ++++da +gl+++ ++++++ r ++ p++  +NK+d+ 
  MMETSP1061-20121228|1742_1 127 LNILDTPGH--------QDFSEDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLPLFTFCNKMDRP 190
                 555555554........3344555666666666666666666666666666666666666666666666654 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00016      0.04      62     132 ..     131     194 ..     126     233 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00016
   TIGR03918  62 DTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeek 132
                 DT+G +D +       e t ++l+ +d a++++da+++le + ++l+e ++ + +p+ + +nk+d  + + 
  MMETSP1061-20121228|1742_1 131 DTPGHQDFS-------EDTYRALAAADNAIMLLDAAKGLEPQTRKLFEVCRLRGLPLFTFCNKMDRPSLSP 194
                 555555543.......6899*********************************************987654 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00023      0.06     251     329 ..     119     190 ..     115     207 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00023
   TIGR00450 251 dleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd.eliitlkkkkkdlllvlNKiDLa 329
                 +++ eG+ +++lDt G   ++d+ E      + +a+  ad  +++lDa k+l+++  +l++  + +  +l+ + NK+D  
  MMETSP1061-20121228|1742_1 119 NFDYEGYRLNILDTPG---HQDFSE-----DTYRALAAADNAIMLLDAAKGLEPQTrKLFEVCRLRGLPLFTFCNKMDRP 190
                 58889**********9...555554.....578899999999***********998899999999************965 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00051      0.13       7     130 ..      58     173 ..      53     188 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00051
   TIGR03680   7 niglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkc.eeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlval 130
                 n++++ h D Gktt++++l       +   l+++ +++    +   +++  e+e+++ ++ +++  + +    +  ++ ++D+PGh+ +        a  d a++ ++a++ + +pqt+  + + 
  MMETSP1061-20121228|1742_1  58 NLAIISHPDSGKTTMTEKLL-----LYGGALQQAGAVRQKAEQRATQSDfMEMEKERGISISSTVMNFD--Y-EGYRLNILDTPGHQDFSEDTYRALAAADNAIMLLDAAKGL-EPQTRKLFEVC 173
                 78889999999999998874.....34444444444444333333222225556666777777666655..3.345689***********999999999*************9.9***9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.76
# Mc/sec: 1036.81
//
Query:       MMETSP1061-20121228|1747_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 701.63
//
Query:       MMETSP1061-20121228|1753_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 777.79
//
Query:       MMETSP1061-20121228|1755_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    6.5  21.9    4.1e+03   -6.9  15.2    2.8  1  TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family


Domain annotation for each model (and alignments):
>> TIGR03750  conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.9  15.2         1   4.1e+03      55      62 ..      46      53 ..       1     101 [] 0.57

  Alignments for each domain:
  == domain 1    score: -6.9 bits;  conditional E-value: 1
   TIGR03750 55 allgvilv 62
                ++lg++l+
  MMETSP1061-20121228|1755_1 46 FILGFMLG 53
                22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 555.45
//
Query:       MMETSP1061-20121228|1757_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 421.11
//
Query:       MMETSP1061-20121228|1754_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-100  333.5   0.0   3.6e-100  333.2   0.0    1.1  1  TIGR00874 talAB: transaldolase
    5.6e-20   69.5   0.0    8.3e-16   55.9   0.0    3.0  2  TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase
    1.9e-10   38.5   0.2    4.1e-10   37.3   0.1    1.6  1  TIGR00876 tal_mycobact: transaldolase
     0.0012   16.5   0.1       0.38    8.2   0.0    2.3  2  TIGR02134 transald_staph: transaldolase


Domain annotation for each model (and alignments):
>> TIGR00874  talAB: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.2   0.0  3.6e-103  3.6e-100       2     315 ..      61     403 ..      60     405 .. 0.89

  Alignments for each domain:
  == domain 1    score: 333.2 bits;  conditional E-value: 3.6e-103
   TIGR00874   2 kldqlkkltvvvadtGdieaikkyep....qdattnPslilkaak..lpkyaklideavaygkkqskdda.......qqveaaldklavnlgleilkivPGrvstevdarlsfdteatvekarkliklyekaGvdkerilikiastWeGiraaeelekeGiacnltllfslaqaiacaeakvtlisPfvGrildwykaa....tgkkeysaeedPGvasvkkiynyykkfgyetevmgasfr..........nieeilelaGvdlltispklldelke.seepverkldpesakkvdak.pieldesefrfelnedamateklaeGirkfaadleklekllee 315
                  l++l k+t++  d+Gd++ ++ky +     dattnP ++ +a +   ++y+++++ea++y+k+q +           +++ a+dklav lg+++  +vPG+vstevd rls+d +a+ve+ar++ik+ye+ Gvdk+rilik+a+tWeGi+aa++lekeGi+cn+tl+fs+ qa a+a+a+++l+sPf Grildwyk++     ++ ++++ +dPGv  +k+iy+y+kk+gy+t+ m +s+r          +++ei++laGvd +ti+p+ll+ l+  + ++++r+ dpe++    +  +++lde +f+   ++d    +kl eGi  f++++  l ++l +
  MMETSP1061-20121228|1754_1  61 ALEELSKMTTISIDSGDLDVVEKYAStglvTDATTNPLFVSQAGAngDKRYQDMVTEAITYAKQQLGGGDspmadfePEINLAMDKLAVSLGAKLTTLVPGKVSTEVDIRLSYDIDASVERARRIIKMYEEVGVDKSRILIKLAGTWEGIQAAKILEKEGIHCNITLIFSFLQAAAAAQAHAYLVSPFPGRILDWYKSKganaADDGNFHPTADPGVLLIKRIYSYFKKYGYKTICMPSSWRpsrgaavdgsDVDEIVALAGVDEMTIPPNLLESLMVlDGDSLSRQCDPETSAACCIDpDYKLDEETFKAYFDSDGCGKDKLNEGIESFTKNTIELREVLYN 403
                 699*********************8633337********99876512689**************954322134444479*********************************************************************************************************************9752222566789********************************95555555444579*********************9726688*******9998865551689*******************************999998876 PP

>> TIGR00875  fsa_talC_mipB: fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00017      0.18       5      38 ..      73     106 ..      69     123 .. 0.81
   2 !   55.9   0.0   8.1e-19   8.3e-16      45     135 ..     154     254 ..     146     341 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00017
   TIGR00875   5 ldtanveeikklaelgilaGvttnPslvakekrs 38 
                 +d  +++ ++k+a  g++   ttnP +v++ + +
  MMETSP1061-20121228|1754_1  73 IDSGDLDVVEKYASTGLVTDATTNPLFVSQAGAN 106
                 799999**********************998754 PP

  == domain 2    score: 55.9 bits;  conditional E-value: 8.1e-19
   TIGR00875  45 eilevveGsvsaev...isldaegmveeakelaklaen.......ivvkiPvtseGlkavkilkkeGiktnvtlvfsaaqallaakaGakyvsPfvgrldd 135
                 +++ +v G vs ev   +s d +  ve a+++ k+ e+       i +k+  t eG++a kil+keGi+ n+tl+fs  qa  aa+a a  vsPf gr+ d
  MMETSP1061-20121228|1754_1 154 KLTTLVPGKVSTEVdirLSYDIDASVERARRIIKMYEEvgvdksrILIKLAGTWEGIQAAKILEKEGIHCNITLIFSFLQAAAAAQAHAYLVSPFPGRILD 254
                 688999******9877789*************99987622222336789999**********************************************744 PP

>> TIGR00876  tal_mycobact: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1     4e-13   4.1e-10      91     169 ..     158     241 ..      65     246 .. 0.72

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 4e-13
   TIGR00876  91 gvdGrvslevdPrledeaeksideakelfki.....ldrPnllikvPaskaGlevvsallaesisvnvtlvfsvkrarevadil 169
                  v G+vs evd rl  + + s+++a+++ k+     +d+  +lik+  +  G+++   l +e+i  n+tl+fs  +a   a++ 
  MMETSP1061-20121228|1754_1 158 LVPGKVSTEVDIRLSYDIDASVERARRIIKMyeevgVDKSRILIKLAGTWEGIQAAKILEKEGIHCNITLIFSFLQAAAAAQAH 241
                 578************************999766666899**********************************98888877765 PP

>> TIGR02134  transald_staph: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00037      0.38       9      57 ..      72     120 ..      65     126 .. 0.83
   2 !    5.9   0.0    0.0019         2      75     150 ..     180     254 ..     155     260 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00037
   TIGR02134   9 fadGadleemvkalknklvkGfttnpslmkkaGisdykafakealaqit 57 
                   d  dl+ + k   ++lv+  ttnp ++ +aG    k + + + + it
  MMETSP1061-20121228|1754_1  72 SIDSGDLDVVEKYASTGLVTDATTNPLFVSQAGANGDKRYQDMVTEAIT 120
                 568899999************************9887777766666665 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0019
   TIGR02134  75 keaekiasyGnnvfv...kipvtntkGestiplikklsadgiklnvtavftieqvkkvvealtegvpaivsvfaGriad 150
                 ++a+ i ++ ++v v   +i +  +     i   k l ++gi+ n+t +f++ q  + ++a +     +vs f Gri d
  MMETSP1061-20121228|1754_1 180 ERARRIIKMYEEVGVdksRILIKLAGTWEGIQAAKILEKEGIHCNITLIFSFLQAAAAAQAHA----YLVSPFPGRILD 254
                 4444444444455442112222222223345556778999**************988777654....689999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1538.62
//
Query:       MMETSP1061-20121228|1758_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   14.6   0.0     0.0091   13.8   0.0    1.3  1  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.2e-06    0.0091      38      96 ..     227     285 ..     218     300 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.2e-06
   TIGR03677  38 verGiaklvviaedvePeeivahlpalceekkipyvyvkkkedlGkaaGlevsaaavai 96 
                 v + +  l+v+a+d+ P+ +   +pa++++ ++p + +  k+ l     ++++ ++v i
  MMETSP1061-20121228|1758_1 227 VAKAQPSLIVLAKDIYPPTLCSAIPAMAQKLEVPLLLLPGKASLELGRAMNAKRTSVLI 285
                 6677889******************************9999876665566666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1626.29
//
Query:       MMETSP1061-20121228|1763_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.8   3.6        3.5    4.8   0.1    3.9  4  TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit
     0.0081   13.8   0.4        1.3    6.6   0.1    2.3  2  TIGR00336 pyrE: orotate phosphoribosyltransferase
  ------ inclusion threshold ------
      0.016   11.9   0.2        1.4    5.5   0.1    2.8  3  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR02852  spore_dpaB: dipicolinic acid synthetase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.3    0.0035       4.8     106     154 ..      33      80 ..      20     101 .. 0.71
   2 !    3.9   0.1    0.0048       6.6      96     129 ..      73     106 ..      66     111 .. 0.86
   3 !    4.8   0.1    0.0025       3.5     101     132 ..     103     134 ..      97     147 .. 0.87
   4 !    4.4   0.0    0.0033       4.6      96     132 ..     173     209 ..     171     212 .] 0.87

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0035
   TIGR02852 106 lmaakatlrnnkPvvlaistndalGlnaknlarllaakniyfvPfgqdd 154
                 l  a  +l+n++ +v+    n++l l  +   +l + +ni +   ++d 
  MMETSP1061-20121228|1763_1  33 LRYASEELQNDRDIVMDAVKNNGLALQYAS-EELHNHRNIVMAAVNNDR 80 
                 556777888888888888888888887554.667778887776666665 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0048
   TIGR02852  96 lanaitdspvlmaakatlrnnkPvvlaistndal 129
                 +a   +d   l  a   l+n++ +vl    nd+ 
  MMETSP1061-20121228|1763_1  73 MAAVNNDREALRYASEDLKNDRDIVLDAVNNDGE 106
                 56677899999999*****************985 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0025
   TIGR02852 101 tdspvlmaakatlrnnkPvvlaistndalGln 132
                 +d   l  a  +l+n++ +v+a   n++l l 
  MMETSP1061-20121228|1763_1 103 NDGEALYYASEELQNDRDIVMAAVNNNGLALQ 134
                 68888999999*****************9986 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.0033
   TIGR02852  96 lanaitdspvlmaakatlrnnkPvvlaistndalGln 132
                 la   +d   l  a  + r+n+  +la   nd+l l+
  MMETSP1061-20121228|1763_1 173 LAAVNNDRWALQRACIRWRDNRDFILAAVKNDGLALE 209
                 566678888889999999****************986 PP

>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0025       3.4      96     142 ..      30      76 ..       7      84 .. 0.71
   2 !    6.6   0.1   0.00098       1.3     106     162 ..      90     146 ..      81     153 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0025
   TIGR00336  96 GeggkivGelkegkkvvvveDvittGtsileaveaiqeagaevagvi 142
                 Ge      e +++++ +v++ v   G +++ a e++++ + +v +++
  MMETSP1061-20121228|1763_1  30 GEALRYASEELQNDRDIVMDAVKNNGLALQYASEELHNHRNIVMAAV 76 
                 44445555667777888888888888888888888888877776654 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00098
   TIGR00336 106 kegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsaeeevekeyel 162
                 +++++ +v++ v   G+++  a e++q+ + +v +++       + a eev+ + ++
  MMETSP1061-20121228|1763_1  90 LKNDRDIVLDAVNNDGEALYYASEELQNDRDIVMAAVNNNGLALQYASEEVQNDRDI 146
                 67889999********************99999998876666666677777776655 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.001       1.4     272     320 ..      16      64 ..       9     107 .. 0.84
   2 ?   -0.2   0.0     0.057        78     279     316 ..      98     135 ..      87     142 .. 0.82
   3 ?    2.7   0.0    0.0076        10     276     315 ..     170     209 ..     159     212 .] 0.87

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.001
   TIGR03540 272 qaiqeaaiaaleeeeevvkelrkvykkrrdllvealkkiGldvkkpkat 320
                 q  q++ +aa++++ e ++ + +  ++ rd++++a+k+ Gl ++ ++  
  MMETSP1061-20121228|1763_1  16 QNDQDIVLAAVNKNGEALRYASEELQNDRDIVMDAVKNNGLALQYASEE 64 
                 566889999*******************************999877655 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.057
   TIGR03540 279 iaaleeeeevvkelrkvykkrrdllvealkkiGldvkk 316
                 + a++++ e +  + +  ++ rd++++a+++ Gl ++ 
  MMETSP1061-20121228|1763_1  98 LDAVNNDGEALYYASEELQNDRDIVMAAVNNNGLALQY 135
                 56888888888888888999999999999999998875 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.0076
   TIGR03540 276 eaaiaaleeeeevvkelrkvykkrrdllvealkkiGldvk 315
                  +++aa+++++  +++++  ++  rd++++a+k+ Gl ++
  MMETSP1061-20121228|1763_1 170 GIGLAAVNNDRWALQRACIRWRDNRDFILAAVKNDGLALE 209
                 56899*****************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 756.26
//
Query:       MMETSP1061-20121228|1766_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00037   16.8   0.7    0.00037   16.8   0.5    1.4  2  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1      0.14   5.9e+02     284     315 ..      25      56 ..      11      78 .. 0.64
   2 !   16.8   0.5   8.9e-08   0.00037     206     340 ..     128     274 ..      91     282 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.14
   TIGR02696 284 adkqereeaedelkekvkeklaeeleerekel 315
                 ++k++++++  ++++++ e+l+ ++++++ ++
  MMETSP1061-20121228|1766_1  25 SKKSKKNKEVLSIESRILERLTRAVKDATPQM 56 
                 33344444555666666666666666665555 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 8.9e-08
   TIGR02696 206 ktlelvkggakapteevvaegleaakpfikvlcraqadlaekaaketeefplf.ldyeddvyeaveeavkdelekvltiad.kqereeaedelkekvkeklaeele...........erekelsaaykavlkklvrervlkekvridg 340
                 ++le +++  +  ++ ++++ ++++   ++ + + q+  +++a  + ++   + +dy  +  +av+++v++el+kv   ++ ++++e++ ++l++  +e+l  + +            +e++l +a+++  k+  r +vl e++  dg
  MMETSP1061-20121228|1766_1 128 RALESIREDPEVGKKTTITQMIKSSNDSVHSVGSLQQMASAQALIQDRDLRAYvIDYATEWEKAVSKKVENELKKVRALQAtRSHYESKVEKLRQC-AEELETKGKknpptqverltRNETKLLEAFECHEKEAGRLCVLIEQATSDG 274
                 567778888888889999999**********999999998888888888887737*********************98866155667677776655.4555555445677778788788999*******************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       388  (0.094588); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1569.73
//
Query:       MMETSP1061-20121228|1760_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 1416.47
//
Query:       MMETSP1061-20121228|1768_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 596.59
//
Query:       MMETSP1061-20121228|1772_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 654.21
//
Query:       MMETSP1061-20121228|1761_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-45  153.4   0.0    3.8e-44  148.7   0.0    2.0  1  TIGR01179 galE: UDP-glucose 4-epimerase
    6.2e-37  125.1   0.0    7.4e-37  124.8   0.0    1.1  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    1.9e-36  123.6   0.0    2.3e-36  123.3   0.0    1.0  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    5.7e-31  105.7   0.0    9.6e-31  104.9   0.0    1.4  2  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    3.2e-22   77.0   0.0    9.8e-18   62.2   0.0    2.2  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    1.6e-14   51.4   0.0    1.1e-09   35.5   0.0    2.2  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    6.2e-14   49.8   0.0    8.2e-13   46.1   0.0    2.2  2  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
      3e-05   21.1   0.0    4.7e-05   20.5   0.0    1.3  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    6.6e-05   19.8   0.0    0.00015   18.7   0.0    1.6  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
    0.00052   17.2   1.5      0.006   13.7   1.0    2.2  1  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   0.0   9.2e-47   3.8e-44       2     328 ..      77     390 ..      76     394 .. 0.93

  Alignments for each domain:
  == domain 1    score: 148.7 bits;  conditional E-value: 9.2e-47
   TIGR01179   2 iLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekit.....evklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkk..liFsssaavYgesekvpisEespln.pinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWekkl 328
                 +LvtG+aG+iG h++ +l++ g+  + +Dn+ +  +  lk+ + i       + +v+gd+ d +kl+a+++e++i   iH+aa++ v  s+++Pl+Y +nnv  t+ +le+m++ g+++  l+++ss++vYg++ ++p+ E+ p++ p++ Y ++k+  E i + + +  ++++ + LR+F v G            + + + + +    +++++++++f        G + RD+  v D+ ++ +++l    ++g  e+ nlG+g+   + + ++ v++ +g++  +e     +GD+++ +ad  k++  lg++p+   +ee i+   +W + +
  MMETSP1061-20121228|1761_1  77 VLVTGAAGFIGMHTAIELKRLGMTPIGYDNVNEYYSVELKESR-IGelrkrGIDFVRGDVCDVSKLKATVREHNITRFIHLAAQAGVRYSLDHPLEYTRNNVDCTVDVLEVMVELGLTEdpLVYASSSSVYGNNVRIPFRETDPVEdPASLYAATKRSDELIAHTYFNL-YNISSIGLRFFTVYGP----------FGRPDMAPWIFTDKISNNQTIRVFN------HGKSKRDFTFVGDIVQGIVHSLF--VNTGRPELVNLGNGHPVVLADFVRIVEERVGQKALIESVGMQKGDVPTTYADVTKARYLLGYNPQTS-IEEGIAAFVEWFRDH 390
                 8*******************************99999998765.222335689**************************************************************987444************************99*******************999.**************95..........467888899999999999******5......69999**************9985..5668999**********************************************************99.999999999997765 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.0   1.8e-39   7.4e-37       1     296 [.      77     374 ..      77     375 .. 0.89

  Alignments for each domain:
  == domain 1    score: 124.8 bits;  conditional E-value: 1.8e-39
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekev.kkeievvlGdirdaesvkkavkgvd..vvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevek..vvhtstsevyGtaqyvPidekhplq.aqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPtiitqilsgkkkiklGsl.sPtrdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgwkpky 296
                 vlvtGa GfiG h + +l + G++     + n + s    ++   e+ k  i+ v Gd+ d + +k++v++ +    +hlaa  ++ ys   p  y   nv  t++vl+   +l+++   +v +s+s vyG    +P  e+ p++ + s y+a+k + + +a ++++ +++  + +r f  yGP      + P i t  +s++++i++ +  +  rdf++v d+v+g+++    ++   e +n+g+++ + ++d v++++e +g++  i++    +  +k +v   +ad +k++ l+g++p++
  MMETSP1061-20121228|1761_1  77 VLVTGAAGFIGMHTAIELKRLGMTPIGYDNVNEYYSVELKESRIGELrKRGIDFVRGDVCDVSKLKATVREHNitRFIHLAAQAGVRYSLDHPLEYTRNNVDCTVDVLEVMVELGLTEdpLVYASSSSVYGNNVRIPFRETDPVEdPASLYAATKRSDELIAHTYFNLYNISSIGLRFFTVYGPFG-RPDMAPWIFTDKISNNQTIRVFNHgKSKRDFTFVGDIVQGIVHSLFVNTGRPELVNLGNGHPVVLADFVRIVEERVGQKALIES----VGMQKGDVPTTYADVTKARYLLGYNPQT 374
                 89********************98765555555555555555444541567*****************9876511689************************************9975459**********************963799***********************************75.45789***************86642789***************************************************99976....567899******************9986 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.0   5.5e-39   2.3e-36       2     317 ..      77     393 ..      76     397 .. 0.87

  Alignments for each domain:
  == domain 1    score: 123.3 bits;  conditional E-value: 5.5e-39
   TIGR01181   2 lLvtGGaGfiGsnfvryileetpdaevvvlDkLt..yag..nkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelk.evrllhistDevyGdlekddaeftettpla.PssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpekliPllitnalagkklpvyGdGqqvrDwlyveDhcraiel.vlekgrvgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWylenesw 317
                 +LvtG aGfiG       l++ + ++ + +D+++  y+   +++ + +l++   + fv+gd++d ++++ +++e+++   +++aa++ v  s+++p ++++ nv  t  +le++ +    e  l+  s   vyG+  +    f et+p++ P s y+a+k + +l+ ++y++ y++  +  r    yGp+  p+     +  ++ +++ + v+ +G+  rD+ +v D +++i   ++ ++ + e  n+g ++     + v+i+ e ++ ++ lie v  ++G+      d++k +  Lg++p++++eeg++  v+W+++++++
  MMETSP1061-20121228|1761_1  77 VLVTGAAGFIGMHTA-IELKRLG-MTPIGYDNVNeyYSVelKESRIGELRK-RGIDFVRGDVCDVSKLKATVREHNITRFIHLAAQAGVRYSLDHPLEYTRNNVDCTVDVLEVMVELGLtEDPLVYASSSSVYGNNVRI--PFRETDPVEdPASLYAATKRSDELIAHTYFNLYNISSIGLRFFTVYGPFGRPDMAPWIFTDKISNNQTIRVFNHGKSKRDFTFVGDIVQGIVHsLFVNTGRPELVNLGNGHPVVLADFVRIVEERVG-QKALIESVGMQKGDVPTTYADVTKARYLLGYNPQTSIEEGIAAFVEWFRDHDAS 393
                 8**********8654.4456664.557889987543444213344566666.779**********************************************************9996541555***********98877..69****9855******************************************96655667789999***********************9864155566677999*********************9.789**********9877667******************************9875 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.8   1.1e+03     276     291 ..      53      68 ..      45      69 .. 0.75
   2 !  104.9   0.0   2.3e-33   9.6e-31       1     314 [.      77     388 ..      77     390 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.8
   TIGR02197 276 rgkyqkfTqadleklr 291
                 r++ q  Tqa++e+l+
  MMETSP1061-20121228|1761_1  53 RETRQRMTQAKIEQLK 68 
                 6778999999999875 PP

  == domain 2    score: 104.9 bits;  conditional E-value: 2.3e-33
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrk.......gekllnlkdeeiadyidkeellerleke.elkkveavfHegAisdT.teldgel.lmenNyeyskellelcaekev...kliYASSAavYGdsee.efreekelerPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvk.vnllllekkeksGifnvGtgkarsfndlaaavvkalgkdekieyidmPealrgkyqkfTqadleklreagykkeflsleegvkdYvkell 314
                 ++vTG+aGfiG   + +l++ g t i   D++++       ++++ +l+++ i     + + +++l+++ + ++++  +H +A +   + ld+ l   +nN++ + ++le+ +e +    +l+YASS +vYG++ + +fre++ +e P  +Y+  K   Del++++ ++ ++  + +Glr+F VyGp    + +ma  +f  +++i +++++++F++ +        RDF++v D+v+ ++  l+ ++ +  + n+G g+     d + +v + +g++  ie + m +         T ad++k+r  + +++++s+eeg++ +v+++ 
  MMETSP1061-20121228|1761_1  77 VLVTGAAGFIGMHTAIELKRLGMTPIG-YDNVNEyysvelkESRIGELRKRGIDFVRGDVCDVSKLKATvREHNITRFIHLAAQAGVrYSLDHPLeYTRNNVDCTVDVLEVMVELGLtedPLVYASSSSVYGNNVRiPFRETDPVEDPASLYAATKRS-DELIAHTYFNLYNI-SSIGLRFFTVYGPF--GRPDMAPWIF--TDKISNNQTIRVFNHGKSK------RDFTFVGDIVQgIVHSLFVNTGRPELVNLGNGHPVVLADFVRIVEERVGQKALIESVGMQKG---D-VPTTYADVTKARYLLGYNPQTSIEEGIAAFVEWFR 388
                 69********************99875.799999888888666999***9999766667788888888877899*******9988752566765525789*************97542228***********9865389****************986.88887677666665.89***********5..5789**9998..589**********977666......*********98455668889999**************************9999999988655...3.35699***************************986 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   2.4e-20   9.8e-18       6     172 ..      76     245 ..      73     253 .. 0.86
   2 !   12.9   0.0   2.3e-05    0.0093     296     334 ..     353     391 ..     272     399 .] 0.81

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 2.4e-20
   TIGR02622   6 kvlvtGhtGfkGsWlslwLkelGaevaGysldpetkpnlfellklakklkd..ssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvk.avvlvtsDkvYenkewvwgyretdalGG.hDpYsaskaaaelvvasyrksf 172
                 +vlvtG  Gf G   ++ Lk+lG + +Gy    e      ++ ++ +  k     v+gd+ d +kl+++++e++    +hlaaq+ vr s ++Ple  + nv  tv++le++ +l  ++  +v   s  vY n+     +retd++      Y+a k + el++++y + +
  MMETSP1061-20121228|1761_1  76 SVLVTGAAGFIGMHTAIELKRLGMTPIGYDNVNEYYSVELKESRIGELRKRgiDFVRGDVCDVSKLKATVREHNITRFIHLAAQAGVRYSLDHPLEYTRNNVDCTVDVLEVMVELGLTEdPLVYASSSSVYGNNV-RIPFRETDPVEDpASLYAATKRSDELIAHTYFNLY 245
                 69***************************8777666555555555544443334799*******************************************************999877615788899999*9975.579******9752678***************9876 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.3e-05
   TIGR02622 296 eaklLkLdsdkakkklgwkprlsleeaveatveWykeay 334
                 +  +   d++ka+  lg++p+ s+ee + a veW+++  
  MMETSP1061-20121228|1761_1 353 DVPTTYADVTKARYLLGYNPQTSIEEGIAAFVEWFRDHD 391
                 555666799**************************9654 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   2.6e-12   1.1e-09       2     122 ..      76     211 ..      75     240 .. 0.79
   2 !   13.9   0.0     1e-05    0.0041     253     325 ..     317     391 ..     298     393 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 2.6e-12
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGe......evr...vlvrktsdrrnleeldvEiveGdlkdeaslkkalk..GcealfHvAAdy..rlwakdpeelykanvegtravleaAleagver..vvytssvatlgvked 122
                  vlvtGa+GF+G++ + +l++ G+      +v     ++ k+s+  +l++  ++ v+Gd+ d ++lk++++   +++ +H+AA+   r    +p e +++nv+ t  vle   e g+    +vy+ss ++ g++  
  MMETSP1061-20121228|1761_1  76 SVLVTGAAGFIGMHTAIELKRLGMtpigydNVNeyySVELKESRIGELRKRGIDFVRGDVCDVSKLKATVRehNITRFIHLAAQAgvRYSLDHPLEYTRNNVDCTVDVLEVMVELGLTEdpLVYASSSSVYGNNVR 211
                 58***************999998632222324322268999****************************973357899****9962255567889999******************975449*****999986654 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1e-05
   TIGR03466 253 lklpkalllpvallaealakltgkePlvtvdgvrmak.kkmffssakAereLgyr.qrpaeealkdaveWfraeg 325
                 ++l +   +++a +   + + +g++ l+   g++ +   + + + +kA+  Lgy+ q+++ee+++  veWfr+++
  MMETSP1061-20121228|1761_1 317 VNLGNGHPVVLADFVRIVEERVGQKALIESVGMQKGDvPTTYADVTKARYLLGYNpQTSIEEGIAAFVEWFRDHD 391
                 5666666666777777777766666666555555544246899***********746799************997 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0     2e-15   8.2e-13      56     270 ..     128     340 ..     114     355 .. 0.79
   2 ?    1.0   0.0      0.11        43     305     336 ..     354     385 ..     344     390 .. 0.86

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 2e-15
   TIGR01472  56 lflhyGdltdsssllklieeikpteiynlaaqshvkvsfeip.eytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektpfn.prspyaaaklyayyivvnyreayglfavnGilfnhesprrGetfvtrkitravakialgleeklylGnldakrdwGyakdyveamw..lmlqqdkpddyviatgettsvrefvevsfelvgi 270
                 + +  Gd++d s l+  ++e + t    laaq+ v+ s++ p eyt + +   t+ +le +  l+l+++   y as+s +yG+   ip +e+ p + p s yaa+k     i+  y + y++ ++   +f    p  G   ++  i     ki+ +++  ++    ++krd+ +  d v+ +   l ++  +p+   +  g+   + +fv +  e vg+
  MMETSP1061-20121228|1761_1 128 IDFVRGDVCDVSKLKATVREHNITRFIHLAAQAGVRYSLDHPlEYTRNNVD-CTVDVLEVMVELGLTEDPLVY-ASSSSVYGNNVRIPFRETDPVEdPASLYAATKRSDELIAHTYFNLYNISSIGLRFFTVYGPF-GRPDMAPWIFT--DKISNNQTIRVF-NHGKSKRDFTFVGDIVQGIVhsLFVNTGRPELVNLGNGHPVVLADFVRIVEERVGQ 340
                 66678************************************9789999876.599************998888.78899***************9549***********************977655555555554.44333433332..345544443333.34478999999999999764237777888888888888888888888888777775 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.11
   TIGR01472 305 vdlllGdatkakeklgwkrevslkelvkemve 336
                 v     d tka+  lg+++++s++e +   ve
  MMETSP1061-20121228|1761_1 354 VPTTYADVTKARYLLGYNPQTSIEEGIAAFVE 385
                 55667899****************99988775 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.1e-07   4.7e-05       2     175 ..      77     283 ..      76     300 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.1e-07
   TIGR01214   2 ilitGakgqlgreLveqlskegsevvaltrs........................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvgal...lvhiSTDYvFDGekkrpYreedet.nPlnvYgqsKlaGEvavraase....kalivRtswlygasggrnFvktml.rlakereelkv 175
                 +l+tGa+g +g + + +l++ g++ + +++                         + d+ d ++l+  +re +    ++ aA   V  +  ++ +  + N+  t  + ++  ++g +   lv+ S   v+  +   p+re+d++  P ++Y+++K   E++++ +++    +++ +R   +yg  g  + + ++  ++ ++++ ++v
  MMETSP1061-20121228|1761_1  77 VLVTGAAGFIGMHTAIELKRLGMTPIGYDNVneyysvelkesrigelrkrgidfvRGDVCDVSKLKATVREHNITRFIHLAAQAGVRYSLDHPLEYTRNNVDCTVDVLEVMVELGLTedpLVYASSSSVYGNNVRIPFRETDPVeDPASLYAATKRSDELIAHTYFNlyniSSIGLRFFTVYGPFGRPDMAPWIFtDKISNNQTIRV 283
                 89*****************9999888888778999********************9*************************************9999**************9998643339*********9999********9846**************99998874443444578888888777666666654134456666665 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.6e-07   0.00015       6     117 ..      76     192 ..      73     257 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.6e-07
   TIGR03589   6 silitGgtGsfGkkfikkllekykvkkiiiysrdelkqfelqqkf....eedklrffiGdvrdkerleraled..vdlvvhaaalkqvpaaeynPleciktnieGaenvidaaldkgv 117
                 s+l+tG++G  G +  +  l++  +  i     +e+  +el+++      +  + f  Gdv d ++l++++++  +   +h aa   v  +   Ple  + n++ + +v++  ++ g+
  MMETSP1061-20121228|1761_1  76 SVLVTGAAGFIGMHT-AIELKRLGMTPIGYDNVNEYYSVELKESRigelRKRGIDFVRGDVCDVSKLKATVREhnITRFIHLAAQAGVRYSLDHPLEYTRNNVDCTVDVLEVMVELGL 192
                 8999**999999764.444566655555544555555555554432222568899***************986336678*******************************99998776 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.0   1.5e-05     0.006       2     176 ..      77     237 ..      76     257 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.5e-05
   TIGR01746   2 vlLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLrealrsyrleeeklaaerievvaGdlseprlGLseaewerLaeevdtivhngAlVnfvqpYe...eLraaNVegtvevlrlaasgka..kpliyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEll 176
                 vl+TGA Gf+G + + eL r       ++++  ++     e     l++ r+ e       i +v+Gd+       s+ ++  ++ ++ + +h +A   + ++ +   e  + NV+ tv+vl++ ++  +   pl+y S+ sv+      +  +++d+ e + +     Ya++K   El+
  MMETSP1061-20121228|1761_1  77 VLVTGAAGFIGMHTAIELKRLG-----MTPIGYDNV---NEYYSVELKESRIGELRKR--GIDFVRGDVC----DVSKLKATVREHNITRFIHLAAQAGVRYSLDhplEYTRNNVDCTVDVLEVMVELGLteDPLVYASSSSVYGNNVRIP-FRETDPVEDPASL----YAATKRSDELI 237
                 9*******************98.....789998885...6667778888888888855..7*******55....589*******************99877664333355789**********99886541157*********98532222.5666666666654....88887766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.33u 0.19s 00:00:00.52 Elapsed: 00:00:00.55
# Mc/sec: 957.52
//
Query:       MMETSP1061-20121228|1762_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-167  556.0   1.1   1.3e-167  555.8   0.7    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
   5.1e-141  468.3   2.0   5.8e-141  468.1   1.4    1.0  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
     4e-130  432.8   1.8   4.6e-130  432.6   1.3    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
   1.4e-110  368.2   0.1   1.8e-110  367.9   0.1    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    4.5e-95  316.9   0.2    5.7e-95  316.5   0.2    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    7.4e-90  300.0   0.0    9.2e-90  299.6   0.0    1.0  1  TIGR02053 MerA: mercuric reductase
    1.5e-72  242.7   0.4    2.3e-72  242.1   0.3    1.2  1  TIGR03452 mycothione_red: mycothione reductase
    3.1e-26   89.9   0.8    3.1e-26   89.9   0.6    2.1  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    6.2e-20   69.0   1.2    8.3e-17   58.8   0.0    2.6  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    3.3e-14   50.4   1.6    5.8e-06   23.2   0.1    3.6  4  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    4.4e-13   46.3   0.1    6.6e-13   45.8   0.1    1.2  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    7.9e-13   46.1   0.0    5.7e-12   43.3   0.0    1.9  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    2.1e-12   44.3   0.0    1.7e-11   41.3   0.0    2.0  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    1.8e-10   37.8   2.0    9.6e-08   28.8   0.2    2.4  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    3.6e-09   33.5   2.3    4.5e-08   29.9   0.5    2.2  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    2.5e-06   24.4   3.1     0.0092   12.7   0.5    3.0  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    3.6e-06   23.9   0.4    4.3e-05   20.4   0.0    2.8  4  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
      4e-06   23.8   0.6      0.015   12.1   0.1    2.3  2  TIGR00518 alaDH: alanine dehydrogenase
    3.7e-05   20.1   0.0      0.012   11.9   0.0    2.3  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    8.9e-05   20.1   2.0      0.003   15.1   0.1    2.9  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00014   17.3   1.0    0.00048   15.5   0.3    2.0  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00027   16.7   0.0    0.00048   15.8   0.0    1.3  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0011   15.3   0.2       0.18    8.1   0.0    2.6  3  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0017   15.4   0.3       0.53    7.2   0.0    2.3  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0021   14.3   3.8      0.031   10.4   0.2    2.6  3  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
      0.008   13.0   0.5       0.04   10.7   0.1    1.9  2  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
  ------ inclusion threshold ------
      0.012   12.2   0.2       0.08    9.4   0.0    2.0  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
      0.012   12.1   1.1       0.11    9.0   0.0    2.9  3  TIGR00551 nadB: L-aspartate oxidase
      0.017   11.8   0.7       0.25    7.9   0.1    2.6  3  TIGR02730 carot_isom: carotene isomerase
      0.022   11.3   1.1        4.2    3.8   0.0    3.1  3  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
        1.8    5.0  11.9       0.33    7.4   0.6    3.7  5  TIGR01813 flavo_cyto_c: flavocytochrome c


Domain annotation for each model (and alignments):
>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  555.8   0.7  9.6e-170  1.3e-167       1     446 []      52     511 ..      52     511 .. 0.97

  Alignments for each domain:
  == domain 1    score: 555.8 bits;  conditional E-value: 9.6e-170
   TIGR01424   1 ydydlfviGaGsGGvraarlaaalGakvaiaeedl.........vGGtcvirGcvPkkllvyasefaeeledakgyGwe.vekaefdwkkllakkdkeiarlsglykkl.lakagvellegraelvdantvevle...dgktytaekiliavGgrpvkpelPGaelaitsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeele.erGirillktvlksiekvddG.lkvtlskdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtdrinltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekftddievyraefrPmkatlsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeelvtmr 446
                 +dyd+ viG+GsGGvra+r+a+ +Gakv + e +          +GGtcv  GcvPkkl+v+as++++ + +  gyGw+      f w+k++++k++ei+rl+++y k+ l +agve +eg ++l ++n ve+      +kt++a++iliavGg p kp++PG e +its+e+f l+++Pk+++vvGgG+ia efa+i+ GlG+ vtl+yrg+  lrgfd+d+r++l+ee+e +  i i  +t  ++i k++dG l v++ +++ +++d+vl+atGr+ +++ l+le+aGve+++ + i vd+ysrt+v+++yavGdvtdri ltPva++e++++a+t f++  +  dh+ va++vf++Pe++tvG seeea+ek+ +di+v+++ frPm +++   +  +++k++vd+k+dkv+G h+  + a+e+iq+vaia+k+Gatk+dfd+t+++hP+saeelvt+r
  MMETSP1061-20121228|1762_1  52 FDYDMVVIGGGSGGVRASRIASGYGAKVLLLEGQNqhgppnysaIGGTCVNVGCVPKKLMVFASRYPGAIGEMSGYGWDeASPGIFSWDKFMEAKNEEITRLNNVYSKFvLGNAGVETIEGLGKLNGKNSVEISLtggGSKTVSAKNILIAVGGWPFKPNIPGIEHTITSNEIFYLDEQPKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMFLRGFDNDMRTHLHEEMErNTNIDIQFNTDPTEIIKNADGsLTVVTGDGKRVECDQVLYATGRKGKIDTLNLESAGVETKN-SFIPVDDYSRTNVEGVYAVGDVTDRIALTPVALMEGHSLADTVFGGMDRPCDHEFVASTVFTTPEIGTVGYSEEEAAEKY-GDITVFKTRFRPMAHSFPKSEMFTMMKVIVDTKTDKVVGCHIATDGAGEMIQGVAIAVKMGATKADFDRTIGIHPTSAEELVTLR 511
                 9*******************************99889*****************************************9677789*********************996489*********************985545569*****************************************************************************************93468******************8999999*******************************987.58******************************************************************************.9**********************************************************************************97 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  468.1   1.4  4.4e-143  5.8e-141       4     484 ..      54     524 ..      51     525 .] 0.96

  Alignments for each domain:
  == domain 1    score: 468.1 bits;  conditional E-value: 4.4e-143
   TIGR01423   4 ydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtgaqymdtlresagfgweldaesvkanwkaliaaknkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqmlkiegielcissneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvan.gidvrtnenpakveknadgskhvvfesgkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtvfaskprktdhtkvasavfsippigvcglveeeaakkyekvavyessftplmhnisgskykkfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeelcsmrtpayyyikgkkve 484
                 yd+vvig gsgg+ a    as y  +v +++ q++hgpp y+a+ggtcvnvgcvpkklmv  ++y   + e +g+gw+  +  +   w  ++ akn+ ++ +n+ y ++     g+e   g+g l+ kn v +  +        +++ a+ il+a g wp + +i+gie+ i+sne fyl+e pkr+++vggg+i++efa i++     g +v+l yr+dm lrgfd ++r +l +++  n  id++ n +p+ + knadgs  vv   gk ++ d v+ a gr  + +tl+l+ +gve +++  i vd+ys+tnv+ +ya+gdvtdr+ ltpva+ eg ++ dtvf+   r  dh  vas+vf+ p ig++g+ eeeaa ky +++v+++ f p+ h    s+    ++k++ d    +v+g h+  d + e+iq vai++k++a  +df  tig+hptsaeel+++rtp+y+y+ gkkve
  MMETSP1061-20121228|1762_1  54 YDMVVIGGGSGGVRASR-IASGYGAKVLLLEGQNQHGPPNYSAIGGTCVNVGCVPKKLMVFASRYPGAIGEMSGYGWDEASPGI-FSWDKFMEAKNEEITRLNNVYSKFVLGNAGVETIEGLGKLNGKNSVEISLTGGG----SKTVSAKNILIAVGGWPFKPNIPGIEHTITSNEIFYLDEQPKRMVVVGGGFIALEFAQIMD---GLGTDVTLMYRGDMFLRGFDNDMRTHLHEEMERNtNIDIQFNTDPTEIIKNADGSLTVVTGDGKRVECDQVLYATGRKGKIDTLNLESAGVE-TKNSFIPVDDYSRTNVEGVYAVGDVTDRIALTPVALMEGHSLADTVFGGMDRPCDHEFVASTVFTTPEIGTVGYSEEEAAEKYGDITVFKTRFRPMAHSFPKSEMFT-MMKVIVDTKTDKVVGCHIATDGAGEMIQGVAIAVKMGATKADFDRTIGIHPTSAEELVTLRTPSYHYKDGKKVE 524
                 9*************986.67889999***************************************************9777776.67********************************************99876654....3567899****************************************************97...579**************************9977736*******************************************************9.7999************************************************************************************************9999876.557777777789*************************************************************9 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  432.6   1.3  3.5e-132  4.6e-130       2     450 .]      53     511 ..      52     511 .. 0.95

  Alignments for each domain:
  == domain 1    score: 432.6 bits;  conditional E-value: 3.5e-132
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveek.........klGGtcvnvGcvPkkvmwyaaslaelledaadyGfksekenkfnfkelkekrdayvdrlngiyqk.nlekekvelieGyaeftkdetvevngke.....ytakhiliatGgkpsipeniPGaelgldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveelek.aglevhklskvvkvektvegklvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseelvtlr 450
                 +yd++viGGGsGG+ + r a+ yGak+ll+e++         ++GGtcvnvGcvPkk+m  a+     + + ++yG+++++ + f++ ++ e +++ + rln +y k  l +  ve ieG  +++++++ve++ +      ++ak ilia Gg p +p niPG e +++s+++f l+e+Pkr+v+vG G+ia+e+a +++glG++  l+ r++  lr+fd+ + +++ ee+e+ ++++++ ++ ++++ k+++g l++   dg +  ++d++++a+Grk + + l+le +gv+++ + +i vd+y  tnveg+ya+Gdv+ ++ ltPva+  G  l++ +f+g  d   d+e v + vf+ PeigtvG +e+ea ekyG  ++ v+k++f +m +++ k+   + +k+++  k +kvvG hi  +g+ e++qG a+a+kmGatkadfd t+ ihPts+eelvtlr
  MMETSP1061-20121228|1762_1  53 DYDMVVIGGGSGGVRASRIASGYGAKVLLLEGQnqhgppnysAIGGTCVNVGCVPKKLMVFASRYPGAIGEMSGYGWDEASPGIFSWDKFMEAKNEEITRLNNVYSKfVLGNAGVETIEGLGKLNGKNSVEISLTGggsktVSAKNILIAVGGWPFKP-NIPGIEHTITSNEIFYLDEQPKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMFLRGFDNDMRTHLHEEMERnTNIDIQFNTDPTEIIKNADGSLTVVTGDG-KRVECDQVLYATGRKGKIDTLNLESAGVETK-NSFIPVDDYSRTNVEGVYAVGDVTDRIALTPVALMEGHSLADTVFGGM-DRPCDHEFVASTVFTTPEIGTVGYSEEEAAEKYG--DITVFKTRFRPMAHSFPKSEMFTMMKVIVDTKTDKVVGCHIATDGAGEMIQGVAIAVKMGATKADFDRTIGIHPTSAEELVTLR 511
                 6******************************8633333333369*************************************************************994578889**************99998554445569****************.************************************************************************86379***************************.67789***********************996.57*******************************************985.7889******************************..599*******************************************************************************98 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  367.9   0.1  1.4e-112  1.8e-110       1     469 [.      52     511 ..      52     521 .. 0.94

  Alignments for each domain:
  == domain 1    score: 367.9 bits;  conditional E-value: 1.4e-112
   TIGR01438   1 ydydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGkalkdskkyGwnveeqvkhdweklskavqdrikslnfsy.rvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvlvrs.illrGfdqdcavkvkeylke.qGvkfkeqvlpkkvekveakvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeefvkls 469
                 +dyd++viGgGsGG+ a++ a+ +gakvlll+  +     +   iGGtcvnvGc+pkklm  a+    a+ +   yGw+        w+k+++a +++i  ln  y +  l +  v+ i+++++l +k+ ++     +  +++sak++lia G  p  p +i+G  e +its+++f l ++p + +vvG++++ale a  + +lg dvt++ r  + lrGfd+d+ ++++e ++  + + ++ +  p+ + k  +  l  +t  +++   e d vlya Grk+++++lnle++gv++  k++ i++d+++rtnv+++yavGd+  d+  ltpva+  G+ lad +f++ ++ +d+e v++tvft  e+g+vG+see+a ekyG+  + vf+++f p+ +s p+ +   + ++kv+   +  ++vvG h+    age++qG+a+a+++g +k d+d tigihp+saee+v+l 
  MMETSP1061-20121228|1762_1  52 FDYDMVVIGGGSGGVRASRIASGYGAKVLLLEGQNQHGPPNYSAIGGTCVNVGCVPKKLMVFASRYPGAIGEMSGYGWDEASPGIFSWDKFMEAKNEEITRLNNVYsKFVLGNAGVETIEGLGKLNGKNSVEISLTGGGSKTVSAKNILIAVGGWPFKP-NIPGI-EHTITSNEIFYLDEQPKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGdMFLRGFDNDMRTHLHEEMERnTNIDIQFNTDPTEIIKNADGSLTVVT--GDGKRVECDQVLYATGRKGKIDTLNLESAGVET--KNSFIPVDDYSRTNVEGVYAVGDVT-DRIALTPVALMEGHSLADTVFGGMDRPCDHEFVASTVFTTPEIGTVGYSEEEAAEKYGD--ITVFKTRFRPMAHSFPKSEM--FTMMKVIVDTK-TDKVVGCHIATDGAGEMIQGVAIAVKMGATKADFDRTIGIHPTSAEELVTLR 511
                 59******************************99998888999*************************************999999***************99999456899*********************************************99.7***9.***********************************************6489****************85267899989999998888777777777..5678999***********************876..7889*******************86.7999******************************************************6..99**************9887..88999887765.579*********************************************9986 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.5   0.2   4.3e-97   5.7e-95       2     447 ..      54     507 ..      53     512 .. 0.92

  Alignments for each domain:
  == domain 1    score: 316.5 bits;  conditional E-value: 4.3e-97
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvekek.........lGGtClnvGCiPtKalLksaevveelkeakelgieven.vkldlekllerkekvvkklvgGv.kaLlkknkvevikGeaklldkkevevkkekke.kkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklkkkg.vkiltnakvtevekeedevv.veakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeqakeegievkvgkfpfaangkalaleetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEai 447
                 yd+vviGgG gG  a+  a+  g kv+l+e ++         +GGtC+nvGC+P K ++ ++     + e++ +g + ++   ++++k++e k++ +++l++   k++l +++ve+i+G +kl++k++ve++ + +  k+++akni+iA G  p +++++   +    its+e++ l+e+p+++v+vGgG i +Efa+i+  lG++vt++   d  l  +d+++   l+++++++  ++i +n+  te+ k++d    v + ++  + +e ++vL a Grk +++ l+le+ gve+++  +i+vd++ rtnv+g+ya+GDv++++ L  vA  eg   a++++g  ++ +d++ v s ++t+Pe+ +vG++ee+a e++ ++ v k  f+ ++++   +e   ++kvivd kt++++G+hi    a e+i+ +a+av++++t  +  +ti  HPt +E +
  MMETSP1061-20121228|1762_1  54 YDMVVIGGGSGGVRASRIASGYGAKVLLLEGQNqhgppnysaIGGTCVNVGCVPKKLMVFASRYPGAIGEMSGYGWDEASpGIFSWDKFMEAKNEEITRLNNVYsKFVLGNAGVETIEGLGKLNGKNSVEISLTGGGsKTVSAKNILIAVGGWPFKPNIP-GIE--HTITSNEIFYLDEQPKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMFLRGFDNDMRTHLHEEMERNTnIDIQFNTDPTEIIKNADGSLtVVTGDG--KRVECDQVLYATGRKGKIDTLNLESAGVETKN-SFIPVDDYSRTNVEGVYAVGDVTDRIALTPVALMEGHSLADTVFGGMDRPCDHEFVASTVFTTPEIGTVGYSEEEAAEKYGDITVFKTRFRPMAHSFPKSEMFTMMKVIVDTKTDKVVGCHIATDGAGEMIQGVAIAVKMGATKADFDRTIGIHPTSAEEL 507
                 9***************99***********96432233333338*********************************98887789**************99997626788999*******************98776569*******************94.333..368***************************************************************98766********9987777666551544444..89***************************666.99*******************************************9999***********************************************************************************************************99965 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.6   0.0     7e-92   9.2e-90       1     446 [.      54     507 ..      54     522 .. 0.92

  Alignments for each domain:
  == domain 1    score: 299.6 bits;  conditional E-value: 7e-92
   TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlve....rGi.....lGGtCvnvGCvPSKallraaevaklakkas.vgllaaevev.dleelleqkkevveelRkeKYedvlesydavdllegkakfkdektvkvdl...gkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellae.eGvevvksakvkavskrnggkklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAenalggaeakldlevlPkvvFtdPevAsvGlteeelakagievesrtvkleavpralinretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEgl 446
                 yd+v+iG+G++++ a   a+ +gakv+l+e    +G+     +GGtCvnvGCvP K ++ a++    + + s +g  +a++ + + ++ +e k+e ++ l +  Y + +    +v+ +eg +k+++++ v++ l   g ++v+ak++liA+G  p +P+ipG+++   +ts+e++ ld+ p+++vv+Ggg ia+E+aq++  lG +vtl++r + +l   ++++ + ++e +++   ++++ ++  +++ k n ++ l  v++    k+ve d++l AtGRk  +d+LnLe +gv+++ + +i vd+++rt+  ++yA GDv++ + l  vA  eG   A+ ++gg ++  d e + + vFt Pe+ +vG++eee+a++  ++++   +   +++   + e   ++K++++++t kv+g ++ ++ A+e+i+ +a+a+k+g+t  d  +t+ +++t aE l
  MMETSP1061-20121228|1762_1  54 YDMVVIGGGSGGVRASRIASGYGAKVLLLEgqnqHGPpnysaIGGTCVNVGCVPKKLMVFASRYPGAIGEMSgYGWDEASPGIfSWDKFMEAKNEEITRLNN-VYSKFVLGNAGVETIEGLGKLNGKNSVEISLtggGSKTVSAKNILIAVGGWPFKPNIPGIEH--TITSNEIFYLDEQPKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMFLRGFDNDMRTHLHEEMERnTNIDIQFNTDPTEIIK-NADGSLTVVTG--DGKRVECDQVLYATGRKGKIDTLNLESAGVETK-NSFIPVDDYSRTNVEGVYAVGDVTDRIALTPVALMEGHSLADTVFGGMDRPCDHEFVASTVFTTPEIGTVGYSEEEAAEKYGDITVFKTRFRPMAHSFPKSEMFTMMKVIVDTKTDKVVGCHIATDGAGEMIQGVAIAVKMGATKADFDRTIGIHPTSAEEL 507
                 8***************************97444466555555***********************9999988888887776653899**********99965.67666666668******************9999999************************97..59***********************************************************99998747899999997777666.34555444444..3679**************************775.668************************************************************************************************************************************************************976 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.1   0.3   1.7e-74   2.3e-72       2     443 ..      53     505 ..      52     509 .. 0.86

  Alignments for each domain:
  == domain 1    score: 242.1 bits;  conditional E-value: 1.7e-74
   TIGR03452   2 hydliiiGtGsGn...silderfedkriaive.k...G.....tfGGtclnvGciptkmfvyaaevakevkesarlgidaei.dsvrwpdivsrvfedridpiaasGeeyrrgdktpnidvyesharfvgrktlrt....edgeeitadqvviaaGsrpvipeaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserftelakk..kfdvrlgrnvtaaeqdddg.vtlelddGstveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvsspyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwamedteglakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpe 443
                 +yd+++iG GsG    s +   +  k + ++e +   G     + GGtc+nvGc+p k+ v+a+     + e + +g d        w++ ++   e  i  + +   ++  g+    ++  e   ++ g++ +++    + +++++a++++ia G+ p+ p++      +  t+++i  l+e+p+++v+vGgG+ialefa+++++lGt+vtl+ r++++lr  d+d+ +++ e  ++  ++d++ ++  t+  +++dg +t+ + dG+ ve+d +l atGr    d+l++e+aGve+ ++  + vd+y rt +egv+a+Gdv++   l  va  e   +++ +    d +  dh+fv ++vft p i+tvG +e+ea e+  ditv    +  +a+ +   +  +++k+i+d +t k++G hi    a  +iq +  a+ +g + +++ r    ihp+ +e
  MMETSP1061-20121228|1762_1  53 DYDMVVIGGGSGGvraSRIASGYGAK-VLLLEgQnqhGppnysAIGGTCVNVGCVPKKLMVFASRYPGAIGEMSGYGWDEASpGIFSWDKFMEAKNE-EITRLNNVYSKFVLGN--AGVETIEGLGKLNGKNSVEIsltgGGSKTVSAKNILIAVGGWPFKPNI-PG-IEHTITSNEIFYLDEQPKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMFLRGFDNDMRTHLHEEMERntNIDIQFNTDPTEIIKNADGsLTVVTGDGKRVECDQVLYATGRKGKIDTLNLESAGVET-KNSFIPVDDYSRTNVEGVYAVGDVTDRIALTPVALMEGHSLADTVFGGMD-RPCDHEFVASTVFTTPEIGTVGYSEEEAAEKYGDITVFKTRFRPMAHSFPKSEMFTMMKVIVDTKTDKVVGCHIATDGAGEMIQGVAIAVKMGATKADFDRT-IGIHPTSAE 505
                 6999****999962213344455554.4444423222233333689*******************************9865505669*999988766.8999999888988888..88999999999998888775222133345**************98875.32.2345799*****************************************************99998877651156677777778887888888**************************************.999**************************************999987766.799********************************************************************************************9999765.678887654 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.7       3.4   4.4e+02       2      16 ..      56      69 ..      55      73 .. 0.79
   2 !   89.9   0.6   2.4e-28   3.1e-26     143     417 ..     226     493 ..     193     501 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.4
   TIGR03385  2 ivivGgvaaGasaAs 16
                +v++Gg+++G+ a s
  MMETSP1061-20121228|1762_1 56 MVVIGGGSGGVRA-S 69
                69*******9864.4 PP

  == domain 2    score: 89.9 bits;  conditional E-value: 2.4e-28
   TIGR03385 143 yldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelek.keielrlneevksvegeekve...vltsgkvyqaDlvilavGvkPnseli..kssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGk.diefkGvlGtsivkfldltiaktGltenelkklnidyktvevkakakanYYPgakdl.llklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdl 417
                 yl +++ +++vv+GgG+i+le +  +   g +vtl+ r++    + +D+++ + ++ee+e+  +i++++n + ++++ +       v  +gk  ++D v+ a+G k +++ +  +s++++ +k+ +i+v+++ +t+ve +ya+GDv++           + l ++a   g+ +a+ + G  d         +++ f   +i+++G  e+e+  +  d+++ + + +  a+ +P ++   ++k+iv+++t k++g   +  +g+ + i+ +a+a+k ++t  d 
  MMETSP1061-20121228|1762_1 226 YL-DEQPKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMF-LRGFDNDMRTHLHEEMERnTNIDIQFNTDPTEIIKNADGSltvVTGDGKRVECDQVLYATGRKGKIDTLnlESAGVE-TKNSFIPVDDYSRTNVEGVYAVGDVTD----------RIALTPVALMEGHSLADTVFGGmDRPCDHEF-VASTVFTTPEIGTVGYSEEEAAEKYGDITVFKTRFRPMAHSFPKSEMFtMMKVIVDTKTDKVVGCH-IATDGAGEMIQGVAIAVKMGATKADF 493
                 44.6789*********************************99.679*************85269*****98877777664432222556999**************99987622566666.4678********************975..........4677788888899999998887555554443.455669999*************88889999999999*******99986368*************97.67899****************99886 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2    0.0016      0.21       1      36 [.      54      89 ..      54      96 .. 0.94
   2 !   58.8   0.0   6.2e-19   8.3e-17      91     278 ..     186     372 ..     165     388 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0016
   TIGR01292  1 ydviiiGaGpaGltaaiYaaranlktlliegkeagg 36
                yd+++iG+G +G+ a+  a+ ++ k+ll+eg+++ g
  MMETSP1061-20121228|1762_1 54 YDMVVIGGGSGGVRASRIASGYGAKVLLLEGQNQHG 89
                79*****************************99887 PP

  == domain 2    score: 58.8 bits;  conditional E-value: 6.2e-19
   TIGR01292  91 vltedekeykakaviiAtGakarklgikgeeeflgrGvsyCavCDgalfkn...kevavvGggdsAveealyLskiakkVtlvhrrdkl.r.....aekillerlkknekievllnstveeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntellkel...leldeegyivvdeemrTsveGvfaaGDvrdks 278
                 ++ + +k+++ak ++iA+G  + k +i+        G+    +    ++ +   k+++vvGgg  A+e a+ +  ++++Vtl+ r d + r      +  l e+++ n +i++++n+  +ei  ++   s+++   +t++ +++++d v +a G + + + l+ +   +e+ ++ +i vd+ +rT+veGv+a+GDv+d+ 
  MMETSP1061-20121228|1762_1 186 LTGGGSKTVSAKNILIAVGGWPFKPNIP--------GIEHTITSNEIFYLDeqpKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMFlRgfdndMRTHLHEEMERNTNIDIQFNTDPTEIIKNAD-GSLTV---VTGDGKRVECDQVLYATGRKGKIDTLNLEsagVET-KNSFIPVDDYSRTNVEGVYAVGDVTDRI 372
                 3444678999999999999999999999........56666667777886633379******************************987432222246788999999***************98765.44444...589999**************999988765554555.468**********************964 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.052       6.9     258     300 ..      35      81 ..      21      88 .. 0.78
   2 !   21.8   0.0   1.1e-07   1.5e-05     272     346 ..     231     310 ..     227     313 .. 0.77
   3 !   23.2   0.1   4.4e-08   5.8e-06     366     443 ..     309     387 ..     306     390 .. 0.84
   4 ?   -2.2   0.0       2.2   2.9e+02     187     232 ..     445     490 ..     420     500 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.052
   TIGR01316 258 kayefpkkdtpve....vgkkvvviGgGntavdaartalrlGaevhv 300
                 +ay ++ +d p e        +vviGgG   v a+r a   Ga+v +
  MMETSP1061-20121228|1762_1  35 RAYSIAMADKPYEpdpnFDYDMVVIGGGSGGVRASRIASGYGAKVLL 81 
                 6777777777765222245679******************9999865 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 1.1e-07
   TIGR01316 272 gkkvvviGgGntavdaartalrlGaevhvvyr.....rt.redm.tareeeikhaeeeGvkfefllqpveviGdeeGevkav 346
                  k++vv+GgG++a++ a+    lG++v+++yr     r+  +dm t  +ee+++  +  + ++f + p+e+i + +G +  v
  MMETSP1061-20121228|1762_1 231 PKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRgdmflRGfDNDMrTHLHEEMER--NTNIDIQFNTDPTEIIKNADGSLTVV 310
                 599****************************93333322123442444555554..44689999************987665 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 4.4e-08
   TIGR01316 366 pvtdeevkleadavivaiGqea..nkiiaedsslktskrGtivvdedletsieGvfaGGdvirGeatvilalgdGkraak 443
                 +vt++  ++e+d v+ a G++   + +  e+++++t k+  i vd+  +t++eGv+a Gdv    a   +al +G+  a 
  MMETSP1061-20121228|1762_1 309 VVTGDGKRVECDQVLYATGRKGkiDTLNLESAGVET-KNSFIPVDDYSRTNVEGVYAVGDVTDRIALTPVALMEGHSLAD 387
                 57788889***********97622567777778876.6789*********************999999999999988776 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 2.2
   TIGR01316 187 etevkklkklGvkfrldylvGktvtleellekydavfigtGaGlpk 232
                 + e+ ++ k+ v+ ++d +vG  ++ +   e    v i++  G +k
  MMETSP1061-20121228|1762_1 445 KSEMFTMMKVIVDTKTDKVVGCHIATDGAGEMIQGVAIAVKMGATK 490
                 6677788888899999999999999988888888888887666554 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.1     5e-15   6.6e-13      93     279 ..     192     370 ..     176     391 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 5e-15
   TIGR02374  93 rtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrele.kkGltvlleketveivkesvekaerlrfkDGssleadlvvlaaGirPrd.eLa.aeaGlkvndrrGiivndsmqtsdPdiyavGecae 279
                 +t+s  ++++a G  pf + ipG ++       ti   + +    ++ k+ +v+GgG++ Le a+ +  lG dv  +    +++ + +D+     L++e+e ++ + +  +++  ei+k+  +   ++   DG+ +e d v++a+G + ++ +L   +aG++      i v+d+ +t+   +yavG++ +
  MMETSP1061-20121228|1762_1 192 KTVSAKNILIAVGGWPFKPNIPGIEH-------TIT-SNEIFYLDEQPKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMFL-RGFDNDMRTHLHEEMErNTNIDIQFNTDPTEIIKNA-DGSLTVVTGDGKRVECDQVLYATGRKGKIdTLNlESAGVETK-NSFIPVDDYSRTNVEGVYAVGDVTD 370
                 66677778889999999999998875.......333.356777788999*************************9987776665.678888888888888725689*************99.78889999******************9962676246899988.78899****************9975 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.59        78     147     158 ..      55      66 ..      34      69 .. 0.80
   2 !   43.3   0.0   4.3e-14   5.7e-12     116     281 ..     202     369 ..     182     375 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.59
   TIGR03169 147 slavvGgGaagv 158
                 +++v+GgG +gv
  MMETSP1061-20121228|1762_1  55 DMVVIGGGSGGV 66 
                 799********8 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 4.3e-14
   TIGR03169 116 adkavpvKPleellaaweellekakaseetkslavvGgGaagvElalalrkrlkkrglkaevsla.seakllqalsakvrklvkrllak.rgievlekeevtevede.....alllaegetleadavllatgakap...awLaesglsldedGflavkktLqslshpevFaaGDca 281
                 a    p KP  + +++  +++e    +e++k+++vvGgG+ ++E a      ++  g +  v+l+ ++  +l+++ + +r  +++ +++  +i++  ++  te+ ++     ++++++g+++e+d+vl atg k +     L++ g+++++  f+ v++  ++ + + v+a+GD+ 
  MMETSP1061-20121228|1762_1 202 AVGGWPFKPNIPGIEHTITSNEIFYLDEQPKRMVVVGGGFIALEFAQI----MDGLGTD--VTLMyRGDMFLRGFDNDMRTHLHEEMERnTNIDIQFNTDPTEIIKNadgslTVVTGDGKRVECDQVLYATGRKGKidtLNLESAGVETKN-SFIPVDDYSRT-NVEGVYAVGDVT 369
                 55667999999999999999999999**************88887755....5555544..77776******************99976269*********999887889999999****************9975222568999999988.8*******999.99********96 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.34        45     147     181 ..      48      82 ..      45      89 .. 0.70
   2 !   41.3   0.0   1.3e-13   1.7e-11      90     294 ..     167     374 ..     137     393 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.34
   TIGR04018 147 ahpyvkqkvvvvGgknsavdaalelyrkgaevtlv 181
                 + p ++ ++vv+Gg +  v a+      ga+v l+
  MMETSP1061-20121228|1762_1  48 PDPNFDYDMVVIGGGSGGVRASRIASGYGAKVLLL 82 
                 56667778888888888888877777777777665 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 1.3e-13
   TIGR04018  90 yeevekvkkkeekfevkt.....ekeeyeakkvvvatGyydipnllnvpGedlpkvsh..yykeahpyvkqkvvvvGgknsavdaalelyrkgaevtlvvrgeelsekvkyWvkpdlenrik.egkikalfesevkeieee.svtletpegeveeiendfvlaltGyrpdlel..leklgveleedekipvydeetmEtnveglylaGvvaaglet 294
                  e++e + k ++k +v+       +++++ak++++a G +  p + n+pG + +  s   +y +  p   +++vvvGg   a + a  +   g++vtl++rg+ + +     ++ +l++ ++ + +i+++f+++ +ei ++    l+  +g+ +++e+d vl  tG + +++   le++gve++++  ipv d +   tnveg+y +G v+  +  
  MMETSP1061-20121228|1762_1 167 VETIEGLGKLNGKNSVEIsltggGSKTVSAKNILIAVGGW--PFKPNIPGIEHTITSNeiFYLDEQP---KRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMFLRGFDNDMRTHLHEEMErNTNIDIQFNTDPTEIIKNaDGSLTVVTGDGKRVECDQVLYATGRKGKIDTlnLESAGVETKNS-FIPVDDYS--RTNVEGVYAVGDVTDRIAL 374
                 5555555555543333333345667899**********65..88899***88654432226666655...789********************************************998862568*******9988765514556666777778***********99877651267899988877.57776655..8**********99876655 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.1    0.0014      0.19       5      39 ..      54      88 ..      51      94 .. 0.88
   2 !   28.8   0.2   7.3e-10   9.6e-08     144     283 ..     232     369 ..     190     379 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0014
   TIGR03143  5 ydlvviGgGpaglsaGiyagraklkvliiekdelG 39
                yd+vviGgG+ g+ a   a+    kvl++e ++  
  MMETSP1061-20121228|1762_1 54 YDMVVIGGGSGGVRASRIASGYGAKVLLLEGQNQH 88
                9**************99999999999999977665 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 7.3e-10
   TIGR03143 144 ldvlviGgGfaaaeeavfltkyakkvtvivrepdf......tcakaiaekvkanPkievkfnvelkevtGddvlreakfvnnatGeeteykakkdegtfGvfvfvGyvPsselfkgkvelderGyvvtnedletnveGvyaaGdlr 283
                 + ++v+GgGf a e a  +   +  vt++ r++ f           + e++  n  i+++fn++ +e+  ++       +  +tG+ ++ +   d+  +      G + + +l    ve   + +++ +++ +tnveGvya+Gd+ 
  MMETSP1061-20121228|1762_1 232 KRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMFlrgfdnDMRTHLHEEMERNTNIDIQFNTDPTEIIKNAD----GSLTVVTGDGKRVE--CDQ-VLYATGRKGKIDTLNLESAGVETK-NSFIPVDDYSRTNVEGVYAVGDVT 369
                 6789**************************999773322223456788999999*********9999864433....34567889888877..444.222233456666666667777765.89********************85 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.058       7.6     213     381 ..      54      82 ..      40      88 .. 0.61
   2 !   29.9   0.5   3.4e-10   4.5e-08     297     489 ..     179     371 ..     150     390 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.058
   TIGR03140 213 ydvlvvGgGPagaaaaiyaarkGlkvalvaeriGGqvkdtvgienlisvkettGsklaanleehikeynidvleeqkvkkieteeeakevelesGevlkaksvivatGakWrelgvpGekeylgkGvayCphCdGPlfkgkkvaviGGGnsGieaaidlaGivehvtvl 381
                 yd++v                                                                                                                                            iGGG  G+ a+   +G   +v +l
  MMETSP1061-20121228|1762_1  54 YDMVV--------------------------------------------------------------------------------------------------------------------------------------------IGGGSGGVRASRIASGYGAKVLLL 82 
                 55555............................................................................................................................................555555555555455555555444 PP

  == domain 2    score: 29.9 bits;  conditional E-value: 3.4e-10
   TIGR03140 297 eeakevelesG..evlkaksvivatGakWrelgvpGekeylg.kGvayCphCdGPlfkgkkvaviGGGnsGieaaidlaGivehvtvlefade.lk...ad..kvlveklkslsnvdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfvqiGlvpn..teflkdavelnrrGeividergrtsvkGifaaGdvttv 489
                 +++ e++l+ G  ++++ak +++a G    + ++pG ++ ++ + + y         + k++ v+GGG   +e a  + G+ ++vt++   d  l+    d    l e+++  +n+di  ++  +ei+ + d   ++      +++ k++e d v+   G      t  l+ a   ++   i +d  +rt+v+G++a Gdvt+ 
  MMETSP1061-20121228|1762_1 179 KNSVEISLTGGgsKTVSAKNILIAVGGWPFKPNIPGIEHTITsNEIFYLDE------QPKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMfLRgfdNDmrTHLHEEMERNTNIDIQFNTDPTEIIKNADGSLTV-----VTGDGKRVECDQVLYATGRKGKidTLNLESAGVETKNSFIPVDDYSRTNVEGVYAVGDVTDR 371
                 455667777764457899999999998888999999666655145555443......67****************************9755542331114422468999999****************997654433.....467777888888887777655411444556644467788*********************86 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.5   6.9e-05    0.0092       2      34 ..      57      89 ..      56     108 .. 0.90
   2 ?   -0.1   0.0       0.5        66     137     163 ..     180     207 ..     165     210 .. 0.76
   3 !    9.9   0.0   0.00049     0.065      74     160 ..     241     329 ..     216     345 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.9e-05
   TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEknkkig 34
                ++iGgG  G+ a+  a+  gakVlllE +++ g
  MMETSP1061-20121228|1762_1 57 VVIGGGSGGVRASRIASGYGAKVLLLEGQNQHG 89
                8***************************99987 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.5
   TIGR00275 137 ekfevet...ekkeleakkvilatGgksyp 163
                 + +e+++   ++k+++ak++++a+Gg  +p
  MMETSP1061-20121228|1762_1 180 NSVEISLtggGSKTVSAKNILIAVGG--WP 207
                 445555544678999***********..54 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.00049
   TIGR00275  74 FsnkdliaffeelgvelkveedgrvFPvsdsaksvldaLlkelke.lgvevlteskvksi.kkeeekfevet.ekkeleakkvilatGgk 160
                 F + ++ + ++ lg +++   +g +F +    +++ + L +e+++ ++++++ +++ ++i k+ ++ ++v t ++k +e+++v+ atG k
  MMETSP1061-20121228|1762_1 241 FIALEFAQIMDGLGTDVTLMYRGDMF-LRGFDNDMRTHLHEEMERnTNIDIQFNTDPTEIiKNADGSLTVVTgDGKRVECDQVLYATGRK 329
                 55667777777788888888888888.888888888889888875268************99999999999999**************75 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       3.3   4.4e+02     284     298 ..      54      68 ..      46      89 .. 0.72
   2 ?   -1.6   0.0       1.5     2e+02     144     176 ..     232     264 ..     228     267 .. 0.85
   3 !   20.4   0.0   3.2e-07   4.3e-05     375     474 ..     293     389 ..     268     395 .. 0.86
   4 ?   -0.1   0.0      0.51        68     313     359 ..     390     435 ..     386     463 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 3.3
   TIGR01317 284 kkvvviGGGdtGadc 298
                  ++vviGGG  G   
  MMETSP1061-20121228|1762_1  54 YDMVVIGGGSGGVRA 68 
                 567888888877654 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.5
   TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtvfered 176
                 k++ vvG G   l  a+ +   G +vt+  r d
  MMETSP1061-20121228|1762_1 232 KRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGD 264
                 667899999999999999999999999988876 PP

  == domain 3    score: 20.4 bits;  conditional E-value: 3.2e-07
   TIGR01317 375 rtvevelkkdedGkyeleevpgseevleadlvllalGfvgpeqa.llddlgvdkdergnikaeldesetsidGvfaaGdarrGqslivwaineGreaarav 474
                 +t   e+ k+ dG   l+ v+g  + +e d vl a G +g   + +l++ gv+ ++++ i   +d s+t+++Gv+a+Gd+    +l   a+ eG + a +v
  MMETSP1061-20121228|1762_1 293 NTDPTEIIKNADGS--LTVVTGDGKRVECDQVLYATGRKGKIDTlNLESAGVE-TKNSFI-PVDDYSRTNVEGVYAVGDVTDRIALTPVALMEGHSLADTV 389
                 566678899999*9..88999*******************9887689999999.555555.7777888**************************9999776 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.51
   TIGR01317 313 feilPkpPeerakdnpwPewPkvlrvdyaheeakakygrdpreysia 359
                 f+ + +p +++   ++  + P++ +v y++eea++kyg d  ++ ++
  MMETSP1061-20121228|1762_1 390 FGGMDRPCDHEFVASTVFTTPEIGTVGYSEEEAAEKYG-DITVFKTR 435
                 56677777888778888899******************.88887765 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   0.00011     0.015     169     196 ..      55      82 ..      51      87 .. 0.92
   2 !    9.7   0.0   0.00058     0.076     168     223 ..     232     287 ..     229     316 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00011
   TIGR00518 169 kvtiiGgGvvGtnaaklavGlGatvtil 196
                 ++++iGgG  G+ a+++a G Ga+v +l
  MMETSP1061-20121228|1762_1  55 DMVVIGGGSGGVRASRIASGYGAKVLLL 82 
                 689**********************887 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00058
   TIGR00518 168 gkvtiiGgGvvGtnaaklavGlGatvtildinvdrlrqldelfgsriktrysnave 223
                  +++++GgG +  + a++  GlG++vt++      lr +d+ + ++++  +   ++
  MMETSP1061-20121228|1762_1 232 KRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMFLRGFDNDMRTHLHEEMERNTN 287
                 5689***********************99766666677766666666665555555 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   8.8e-05     0.012     379     415 ..      53      89 ..      44      98 .. 0.89
   2 !    5.9   0.0    0.0057      0.76     377     413 ..     229     265 ..     197     344 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.8e-05
   TIGR03997 379 rkkvlvvGgGPaGleaaataarrGhrvtllereeelG 415
                    ++v+GgG +G++a++ a+  G +v+lle +++ G
  MMETSP1061-20121228|1762_1  53 DYDMVVIGGGSGGVRASRIASGYGAKVLLLEGQNQHG 89 
                 56789**************************999887 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0057
   TIGR03997 377 rrrkkvlvvGgGPaGleaaataarrGhrvtllereee 413
                 +++k+++vvGgG   le a+     G +vtl+ r+++
  MMETSP1061-20121228|1762_1 229 EQPKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDM 265
                 4569999999999999999999999999999988775 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   2.3e-05     0.003       1      33 [.      54      86 ..      54      92 .. 0.92
   2 ?   -1.9   0.0       3.6   4.7e+02     121     146 ..     179     204 ..     157     205 .. 0.77
   3 ?    3.3   0.0     0.089        12     107     156 ..     289     338 ..     268     369 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.3e-05
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekke 33
                yD+vv+G+G  G  a + ++  G++Vllle ++
  MMETSP1061-20121228|1762_1 54 YDMVVIGGGSGGVRASRIASGYGAKVLLLEGQN 86
                9*****************************876 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.6
   TIGR02032 121 dekvkvevredekkevtakivigAdG 146
                 +++v++++ ++ +k+v+ak + +A G
  MMETSP1061-20121228|1762_1 179 KNSVEISLTGGGSKTVSAKNILIAVG 204
                 378899999999999****9999977 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.089
   TIGR02032 107 elllettvlsveiedekvkvevredekkevtakivigAdGakskvak.klg 156
                 ++  +t  ++ +i++  + ++v +++ k v+++ v  A+G k+k+   +l+
  MMETSP1061-20121228|1762_1 289 DIQFNTDPTE-IIKNADGSLTVVTGDGKRVECDQVLYATGRKGKIDTlNLE 338
                 5555555555.444456666666667899**************99875555 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.45        59     531     572 ..      48      88 ..      32      94 .. 0.79
   2 !   15.5   0.3   3.6e-06   0.00048     667     835 ..     232     389 ..     215     409 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.45
   TIGR03315 531 pqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkeka 572
                 p+ + +   + viG+G  G+ a+ + +  G +v ++e +++ 
  MMETSP1061-20121228|1762_1  48 PDPNFDY-DMVVIGGGSGGVRASRIASGYGAKVLLLEGQNQH 88 
                 4555554.6789999999999999999999999999977665 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 3.6e-06
   TIGR03315 667 krvvvvGgGntamdaaraalrvpGv.ekvtvvyrrtkkemPaskeeleealedGvefkellsPekfe.dgklvcekmklgekdasGrrrpvetgelveleadaviaavGeqvdtell..kklgieldekgkvvvneetketsvtnvfviGdakkGPativeaiadgrkaakai 835
                 kr+vvvGgG +a++ a+    ++G+  +vt++yr     +    ++++  l++ +e +  +  ++f+ d + ++       k+a G   +v tg+   +e d v+ a G++   + l  +  g+e+ ++ ++ v++  + t+v++v+ +Gd++   a    a+ +g+  a+++
  MMETSP1061-20121228|1762_1 232 KRMVVVGGGFIALEFAQI---MDGLgTDVTLMYRGD-MFLRGFDNDMRTHLHEEMERN-TNIDIQFNtDPTEII-------KNADGS-LTVVTGDGKRVECDQVLYATGRKGKIDTLnlESAGVETKNS-FIPVDDY-SRTNVEGVYAVGDVTDRIALTPVALMEGHSLADTV 389
                 788888888888887654...566524688888754.466777778888888776643.333444442333222.......344554.4678999999***********98777765115677776554.5566666.79************988887777788887777776 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.6e-06   0.00048     166     204 ..      51      89 ..      30      98 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.6e-06
   TIGR01372 166 nahcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaG 204
                 n   D++v+G+G+ G+ a r A+  Ga+v+l++ q++ G
  MMETSP1061-20121228|1762_1  51 NFDYDMVVIGGGSGGVRASRIASGYGAKVLLLEGQNQHG 89 
                 45569****************************999988 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0013      0.18     374     408 ..      55      89 ..      45     102 .. 0.88
   2 ?    4.4   0.0     0.017       2.3     372     407 ..     231     266 ..     214     381 .. 0.84
   3 ?   -2.6   0.0       2.3     3e+02     448     520 ..     416     487 ..     411     494 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0013
   TIGR03996 374 dvlvvGGGpaGleaarvlavrGhrvtlaeasarlG 408
                 d++v+GGG  G+ a+r+ +  G +v l e   + G
  MMETSP1061-20121228|1762_1  55 DMVVIGGGSGGVRASRIASGYGAKVLLLEGQNQHG 89 
                 789**************************988877 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.017
   TIGR03996 372 pgdvlvvGGGpaGleaarvlavrGhrvtlaeasarl 407
                 p  ++vvGGG   le a+++   G  vtl+ ++  +
  MMETSP1061-20121228|1762_1 231 PKRMVVVGGGFIALEFAQIMDGLGTDVTLMYRGDMF 266
                 66789***********************99887654 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 2.3
   TIGR03996 448 daeeldaaraaGevvvlatGsvarplpapvdatvrvldaaevleaddalaeGpvvvidplGGpv.gvavaeala 520
                 +  e +aa++ G++ v+ t   +   ++p  +   ++ +    ++d+    G ++  d  G  + gva+a  + 
  MMETSP1061-20121228|1762_1 416 GYSEEEAAEKYGDITVFKTRFRPMAHSFPKSEMFTMMKVIVDTKTDK--VVGCHIATDGAGEMIqGVAIAVKMG 487
                 55667788899999999999999999999888888777765444444..5688999999888775688876655 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2      0.01       1.4       1      42 [.      55      95 ..      55     106 .. 0.78
   2 !    7.2   0.0     0.004      0.53      84     140 ..     275     330 ..     265     343 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.01
   TIGR01790  1 DliviGgGlAglaiAlela.kpglrvqlieaapklpfnntygv 42
                D++viGgG  g+  A ++a   g +v l+e++++++ + +y++
  MMETSP1061-20121228|1762_1 55 DMVVIGGGSGGVR-ASRIAsGYGAKVLLLEGQNQHG-PPNYSA 95
                99******76665.5555559*********877765.666775 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.004
   TIGR01790  84 raqlkeellqkleeavlwleakaikveadavslslvecaggqriqarlVidargfka 140
                 r++l+ee++++ +  +++      ++ ++a    +v +++g+r+++  V+ a+g k 
  MMETSP1061-20121228|1762_1 275 RTHLHEEMERNTNIDIQFNTD-PTEIIKNADGSLTVVTGDGKRVECDQVLYATGRKG 330
                 899**********99666555.556666667777899*****************876 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.2   0.00023     0.031       1      32 [.      54      85 ..      54     106 .. 0.84
   2 ?   -1.7   0.0       1.1   1.4e+02       3      29 ..     234     260 ..     232     263 .. 0.90
   3 ?    4.2   0.0     0.018       2.4      99     151 ..     275     327 ..     269     341 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00023
   TIGR00136  1 fdviviGaGhaGieaalaaarlgaktllltln 32
                +d++viG+G  G+ a+ +a+  gak+lll  +
  MMETSP1061-20121228|1762_1 54 YDMVVIGGGSGGVRASRIASGYGAKVLLLEGQ 85
                689************************99654 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.1
   TIGR00136   3 viviGaGhaGieaalaaarlgaktlll 29 
                 ++v+G+G   +e a ++  lg+ ++l+
  MMETSP1061-20121228|1762_1 234 MVVVGGGFIALEFAQIMDGLGTDVTLM 260
                 79***************9999999987 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.018
   TIGR00136  99 kkavkealenqpnlsllqeevedliledndevkGvvtkdgaklrakavilttG 151
                 ++ ++e++e++ n+++  ++    i+++ d    vvt dg+++++++v+ +tG
  MMETSP1061-20121228|1762_1 275 RTHLHEEMERNTNIDIQFNTDPTEIIKNADGSLTVVTGDGKRVECDQVLYATG 327
                 67789999********888776667777888889****************999 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1    0.0003      0.04       2      43 ..      54      95 ..      53     104 .. 0.88
   2 ?   -0.1   0.0      0.58        76     190     232 ..     267     310 ..     255     335 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0003
   TIGR00031  2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncyde 43
                +d++++G G  G+  + i++ ++ +vl++e +n+ G   y  
  MMETSP1061-20121228|1762_1 54 YDMVVIGGGSGGVRASRIASGYGAKVLLLEGQNQHGPPNYSA 95
                9********99999999****************999887765 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.58
   TIGR00031 190 iqglPkgGytklvekmldhplidlkln.skaellklkdekllfa 232
                 ++g  ++  t+l e m  +  id+++n  ++e++k  d+ l + 
  MMETSP1061-20121228|1762_1 267 LRGFDNDMRTHLHEEMERNTNIDIQFNtDPTEIIKNADGSLTVV 310
                 566677778999999************66899****99988765 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00061      0.08       3      37 ..      55      89 ..      53      93 .. 0.94
   2 ?    0.2   0.0      0.36        48       2      30 ..     232     260 ..     231     266 .. 0.91

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00061
   TIGR02733  3 svvviGaGiaGltaaallakrGlevtlleaaaqvG 37
                ++vviG+G +G+ a+ + +  G +v lle ++q G
  MMETSP1061-20121228|1762_1 55 DMVVIGGGSGGVRASRIASGYGAKVLLLEGQNQHG 89
                68****************************99988 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.36
   TIGR02733   2 ksvvviGaGiaGltaaallakrGlevtll 30 
                 k++vv+G+G   l  a ++   G +vtl+
  MMETSP1061-20121228|1762_1 232 KRMVVVGGGFIALEFAQIMDGLGTDVTLM 260
                 5789***********************97 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.1      0.64        85       3      46 ..      54      98 ..      53     103 .. 0.70
   2 ?   -2.3   0.0       2.2   2.9e+02       4      30 ..     233     260 ..     231     264 .. 0.82
   3 ?    9.0   0.0   0.00083      0.11     336     356 ..     349     369 ..     346     394 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.64
   TIGR00551  3 advvviGsGaagLsaalalaekyr.vvvlskaevkesasvyaqgG 46
                 d+vviG+G  g+ a+  ++  +  v +l  ++ +    + a gG
  MMETSP1061-20121228|1762_1 54 YDMVVIGGGSGGVRASRIASGYGAkVLLLEGQNQHGPPNYSAIGG 98
                589**********99988887777466666555555555556666 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.2
   TIGR00551   4 dvvviGsGaagLsaalalaekyr.vvvl 30 
                 ++vv+G+G  +L  a  ++  ++ v+++
  MMETSP1061-20121228|1762_1 233 RMVVVGGGFIALEFAQIMDGLGTdVTLM 260
                 689**********999999887767665 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00083
   TIGR00551 336 isvdaygrtevkGLYaiGeva 356
                 i vd+y rt+v+G+Ya+G+v+
  MMETSP1061-20121228|1762_1 349 IPVDDYSRTNVEGVYAVGDVT 369
                 679***************986 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.1    0.0019      0.25       1      30 [.      54      83 ..      54     100 .. 0.86
   2 ?    0.9   0.0      0.26        35     235     291 ..     278     335 ..     261     358 .. 0.80
   3 ?   -1.0   0.0      0.99   1.3e+02     453     468 ..     354     369 ..     341     379 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0019
   TIGR02730  1 ydaivigsgigglvtatqlaakgakvlvle 30
                yd++vig g gg+ ++   +  gakvl+le
  MMETSP1061-20121228|1762_1 54 YDMVVIGGGSGGVRASRIASGYGAKVLLLE 83
                9***********7666666678*******9 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.26
   TIGR02730 235 lvkglekag.gkirykarvtkiilendkavgvkladgekirakrivsnatrwdtfgkl 291
                 l + +e+    +i++++  t+ii++ d ++ v   dg+++ + +++  + r   +++l
  MMETSP1061-20121228|1762_1 278 LHEEMERNTnIDIQFNTDPTEIIKNADGSLTVVTGDGKRVECDQVLYATGRKGKIDTL 335
                 55666665415899*****************************999988887666655 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.99
   TIGR02730 453 fnrtaidglycvgdst 468
                 + rt ++g+y vgd t
  MMETSP1061-20121228|1762_1 354 YSRTNVEGVYAVGDVT 369
                 789***********76 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.032       4.2       1      31 [.      54      84 ..      54      92 .. 0.92
   2 ?    3.0   0.0     0.058       7.6     314     341 ..     218     243 ..     213     256 .. 0.87
   3 ?    1.2   0.0       0.2        26     147     190 ..     473     520 ..     440     523 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.032
   TIGR01377  1 fDvivvGaGvmGsaaayqLakrgkkvLLleq 31
                +D++v+G G+ G+ a+   +  g kvLLle 
  MMETSP1061-20121228|1762_1 54 YDMVVIGGGSGGVRASRIASGYGAKVLLLEG 84
                8**************999999********95 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.058
   TIGR01377 314 tktPDedfvlDlhpkyydnvvigaGfsG 341
                 t t +e f lD +pk  + vv+g+Gf  
  MMETSP1061-20121228|1762_1 218 TITSNEIFYLDEQPK--RMVVVGGGFIA 243
                 7899**********4..69*******65 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.2
   TIGR01377 147 alralqe..laealGaivrdgtkvveikrd..ellvtvktkkksyqak 190
                 a +++q   +a+++Ga+  d ++   i+++  e+lvt++t +  y+  
  MMETSP1061-20121228|1762_1 473 AGEMIQGvaIAVKMGATKADFDRTIGIHPTsaEELVTLRTPSYHYKDG 520
                 55666651156789**************999999******99999754 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.6    0.0025      0.33       1      47 [.      55     100 ..      55     112 .. 0.82
   2 ?    1.2   0.0      0.19        26     167     193 ..     182     208 ..     143     265 .. 0.68
   3 ?    1.6   0.0      0.15        20     139     169 ..     282     312 ..     272     331 .. 0.78
   4 ?   -1.8   0.0       1.5     2e+02     403     419 ..     354     370 ..     341     391 .. 0.78
   5 ?   -3.4   0.1       4.7   6.3e+02     210     243 ..     469     503 ..     455     506 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0025
   TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNsaiaaggmn 47 
                 d+vv+G G+ G+ a+  a   g a+v++le ++  G     a gg +
  MMETSP1061-20121228|1762_1  55 DMVVIGGGSGGVRASRIASGYG-AKVLLLEGQNQHGPPNYSAIGGTC 100
                 78******************99.*******99999965555545444 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.19
   TIGR01813 167 vkvkekgkkikikaakaVvlatGGfgs 193
                 v+++ +g+  k++ ak++++a GG+  
  MMETSP1061-20121228|1762_1 182 VEISLTGGGSKTVSAKNILIAVGGWPF 208
                 34444899999*************975 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.15
   TIGR01813 139 kakkegvelrlnskvedlikddqgqvtGvkv 169
                   ++++++++ n++ +++ik+ +g++t v  
  MMETSP1061-20121228|1762_1 282 MERNTNIDIQFNTDPTEIIKNADGSLTVVTG 312
                 456789******************9986654 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 1.5
   TIGR01813 403 nsekpikgLfAaGEvtG 419
                  s + ++g++A+G+vt 
  MMETSP1061-20121228|1762_1 354 YSRTNVEGVYAVGDVTD 370
                 4567899********95 PP

  == domain 5    score: -3.4 bits;  conditional E-value: 4.7
   TIGR01813 210 stnqkgatgdglkvlekigaalvdld.eiQahpta 243
                 +t  +g   +g+ ++ k+ga+  d d +i +hpt 
  MMETSP1061-20121228|1762_1 469 ATDGAGEMIQGVAIAVKMGATKADFDrTIGIHPTS 503
                 57777777788889999999999987457888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        31  (0.00755729); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.63u 0.20s 00:00:00.83 Elapsed: 00:00:00.54
# Mc/sec: 1283.23
//
Query:       MMETSP1061-20121228|1774_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.4    3.4   9.0        0.3    6.8   0.0    2.3  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   4.9      0.12   4.8e+02     678     743 ..      70      90 ..       3     160 .. 0.57
   2 ?    6.8   0.0   7.4e-05       0.3     125     153 ..     210     238 ..     178     242 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.12
   TIGR00870 678 rarrveevnwktierkaetlsekpgtrsqkvmkrlikryvlaeqrkrkdeevteeetkelkqdiss 743
                 ++r                                             ++e +++ +ke +q+ +s
  MMETSP1061-20121228|1774_1  70 QQR---------------------------------------------RQEQRRQRQKEQEQQEES 90 
                 111.............................................112222222222221111 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 7.4e-05
   TIGR00870 125 tseftkgitalilAihkqnyeivklLlek 153
                   +  +g tal+ A  ++   iv+lLl++
  MMETSP1061-20121228|1774_1 210 NRQDKHGYTALHFATLNEHTDIVRLLLDQ 238
                 556679*********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       569  (0.138713); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.22s 00:00:00.76 Elapsed: 00:00:00.56
# Mc/sec: 930.87
//
Query:       MMETSP1061-20121228|1778_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1494.12
//
Query:       MMETSP1061-20121228|1782_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1150.19
//
Query:       MMETSP1061-20121228|1777_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 1357.12
//
Query:       MMETSP1061-20121228|1784_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 1233.59
//
Query:       MMETSP1061-20121228|1788_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35    8.9   3.4        3.6    5.6   2.3    2.3  1  TIGR04073 exo_TIGR04073: putative exosortase-associated protein, TIGR04073 family


Domain annotation for each model (and alignments):
>> TIGR04073  exo_TIGR04073: putative exosortase-associated protein, TIGR04073 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   2.3   0.00089       3.6      31      49 ..       3      21 ..       1      68 [] 0.82

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00089
   TIGR04073 31 egaaagvtvGllkGvgmti 49
                eg+ +g+t G+l+G+   +
  MMETSP1061-20121228|1788_1  3 EGVLEGITEGVLEGITEGV 21
                6777777777777776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 309.49
//
Query:       MMETSP1061-20121228|1780_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 1841.25
//
Query:       MMETSP1061-20121228|1791_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00062   16.5   0.0     0.0019   15.0   0.0    1.7  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0018   15.2   0.0     0.0028   14.6   0.0    1.2  1  TIGR00362 DnaA: chromosomal replication initiator protein DnaA


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   9.2e-07    0.0019      27      57 ..      45      74 ..      21      84 .. 0.79
   2 ?   -1.9   0.0      0.12   2.5e+02      25      59 ..     115     149 ..     113     161 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 9.2e-07
   TIGR02928 27 lakalkpilrgsrpsnvliyGktGtGKtavt 57
                l+ ++k++l g + s v+ yG+tGtGKt ++
  MMETSP1061-20121228|1791_1 45 LQPIIKDVLMGYE-STVFAYGQTGTGKTHTM 74
                5556777777776.57************986 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.12
   TIGR02928  25 eelakalkpilrgsrpsnvliyGktGtGKtavtkk 59 
                 e ++++l+++l g++ +n     k Gt K+a++  
  MMETSP1061-20121228|1791_1 115 EIYNEELSDLLAGNHNHNHNKQPKGGTTKSATAAT 149
                 55788999999999999999999999999998765 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-06    0.0028      99     155 ..      16      75 ..       2      76 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.4e-06
   TIGR00362  99 skkselnpkytFdnFvvGksNk.lalaaaka.vaenpg.kaynPlfiyGgvGlGKTHLlq 155
                 s +++++++y Fdn  ++ s +   ++a  + +++       +++f yG++G GKTH ++
  MMETSP1061-20121228|1791_1  16 SGSRQIKSSYRFDNVFTSFSTQeDVFEATLQpIIKDVLmGYESTVFAYGQTGTGKTHTME 75 
                 45688999999*99776655441456665552666654244579*************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|1790_1  [L=768]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 2667.57
//
Query:       MMETSP1061-20121228|1796_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 2001.83
//
Query:       MMETSP1061-20121228|1793_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 1244.98
//
Query:       MMETSP1061-20121228|1798_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   11.1   6.6       0.04   11.0   4.6    1.1  1  TIGR02794 tolA_full: protein TolA
       0.45    7.9   8.3       0.44    7.9   5.8    1.2  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
        2.3    5.0   8.8        2.3    5.0   6.1    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   4.6   2.9e-05      0.04      63      99 ..      31      67 ..       3      74 .. 0.45

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.9e-05
   TIGR02794 63 kke..pkpeepkqerqkkleqqaeeakkkqaaeqarqke 99
                +++  p+p++p+q+ q++++qq++++  + a   ++q++
  MMETSP1061-20121228|1798_1 31 PQPqpPTPAQPQQQ-QQQQQQQQQQMVHNHA-SIQQQQQ 67
                22201123333222.2222222223333333.2333333 PP

>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   5.8   0.00032      0.44      23      54 ..      32      66 ..      11      93 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00032
   TIGR03593 23 kdpkpepqkppaaaqqaesqsaa...aaaaasaaa 54
                ++++p+p++p++++qq+++q+++   ++a+ ++++
  MMETSP1061-20121228|1798_1 32 QPQPPTPAQPQQQQQQQQQQQQQmvhNHASIQQQQ 66
                34444444444444444444444554222222222 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.1    0.0017       2.3     398     516 ..      31      68 ..       2      94 .. 0.33

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0017
   TIGR01628 398 sgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnrnrnvlgnmnkkqqnaaskanqanvkaqpqaqsknqmqqvvqdnnlpqkqat 516
                 +  +q ++  + ++q+++qq ++q+++++                                                                                + +++q+q+ 
  MMETSP1061-20121228|1798_1  31 PQ-PQPPTPAQPQQQQQQQQQQQQQMVHN--------------------------------------------------------------------------------HASIQQQQQL 68 
                 11.11111111111111111111222222................................................................................1111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       463  (0.112872); expected 82.0 (0.02)
Passed bias filter:                      252  (0.0614334); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 452.53
//
Query:       MMETSP1061-20121228|1805_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   12.4   0.0      0.076   11.3   0.0    1.6  1  TIGR01079 rplX_bact: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.9e-05     0.076       2      47 ..     113     162 ..     112     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.9e-05
   TIGR01079   2 akikkgDtVlvisGkdkGkkGkvlkvl....pkkdkviVegvnlvkkhvk 47 
                 a ik+gD+V+++ G++  +   vl+v+    ++++k++ e +n vk ++ 
  MMETSP1061-20121228|1805_1 113 AGIKNGDRVMILPGDKEARPVDVLAVYlfllSSNEKALEEAINRVKEEQP 162
                 569**********************97444468899*******9998774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1476.63
//
Query:       MMETSP1061-20121228|1802_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.41
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|1804_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.7    5.5  13.0      0.099   10.9   3.4    2.1  3  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   3.4   2.4e-05     0.099       2      35 ..      47      80 ..      46      88 .. 0.90
   2 ?   -0.4   0.2     0.079   3.3e+02      26      34 ..      87      95 ..      79     109 .. 0.70
   3 ?   -1.2   0.6      0.15     6e+02       2      15 ..      88     102 ..      87     143 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.4e-05
   TIGR04104  2 kCknCkekfsykellkslfskkkkikCpnCgekq 35
                 C+ C+ k+++++ ++++  + ++  C +C+ ++
  MMETSP1061-20121228|1804_1 47 VCQRCSDKIEWRKKYRKYKPRTQPGTCNECRRRN 80
                7**************999999*********9876 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.079
   TIGR04104 26 ikCpnCgek 34
                + C++C + 
  MMETSP1061-20121228|1804_1 87 TICEKCTTD 95
                567777654 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.15
   TIGR04104   2 kCknCke.kfsykel 15 
                 +C++C + +++ k l
  MMETSP1061-20121228|1804_1  88 ICEKCTTdSVKAKAL 102
                 566665413444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1247.07
//
Query:       MMETSP1061-20121228|1806_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1816.79
//
Query:       MMETSP1061-20121228|1807_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-91  304.8   0.0    3.3e-90  300.4   0.0    2.0  1  TIGR00048 TIGR00048: 23S rRNA m2A2503 methyltransferase
      1e-06   26.5   0.0    1.7e-06   25.8   0.0    1.3  1  TIGR04038 tatD_link_rSAM: radical SAM protein, TatD family-associated
    0.00022   18.7   0.0    0.00041   17.8   0.0    1.4  1  TIGR04100 rSAM_pair_X: radical SAM enzyme, TIGR04100 family
     0.0014   15.4   0.0      0.002   14.8   0.0    1.3  1  TIGR04136 rSAM_FibroRumin: radical SAM peptide maturase, FibroRumin system
     0.0035   14.0   0.1     0.0087   12.7   0.0    1.6  1  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family


Domain annotation for each model (and alignments):
>> TIGR00048  TIGR00048: 23S rRNA m2A2503 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.4   0.0     4e-93   3.3e-90       8     351 ..      94     468 ..      89     473 .. 0.87

  Alignments for each domain:
  == domain 1    score: 300.4 bits;  conditional E-value: 4e-93
   TIGR00048   8 slldlelkelkeflkdlGekpfrakqlvkWlyekgkdsfedmtnlskdlrekl............keefelr.....alevaveqesaDgtkkyllkladgqtietvll..keedratvCvssqvGCaleCtfCatakgGfkrnLeaseiidqvlkvkkiv...evteervsnvvlmGmGePllnlnevvkaleilnddvglgiskrritistsGvvpkidkl...adkkldvalaisLhapndelrselvPinkkyn.letlleevrkyleksnkrvtfeyvllddvnDqvehaeeLaelLkgv.....kckvnLipfnpveeadyersse.eridrfakvLk.skgltvtirksrgddidaaCGqLrakkkedrt 351
                 +l  ++l+el+e++   G + fr+kq++ W+ +kg+++ +dm+nl+kdlr  +            ++  +++     al +a e++s+Dgt+k + +l dgq ie+vl+   e+ r+t C+ssq GCa++C fCat++ Gf r L ++ei++qv + + ++   +  ++r+sn+v+mGmGePl n  +vvka++ +n+++g  i++rrit+st+Gvvp i+kl   +  + +v la+sLh +nd  r +l+P n +y  l++l+   r+y++++++rvt+e+ l++  nD+v+ a++L +l+k+        +vn+ip np+++ + +++s+ +r+++f + L+ + g+t t r  rg dida CGqL+ak ++ + 
  MMETSP1061-20121228|1807_1  94 NLHTITLEELQELVVSWGYPKFRGKQIYGWIRDKGVTNPNDMNNLPKDLRSTMiqftsrgnngndRSDSPVNdngggALSLAFEAVSKDGTIKRAYQLRDGQLIESVLMgpYEDGRYTACISSQAGCAMGCVFCATGQMGFARQLSSDEILEQVSRFASELkrqNDSSKRLSNIVFMGMGEPLANYRNVVKAVNRINSELG--IGARRITVSTVGVVPSIRKLyaeGTDMPQVRLAVSLHCANDAERTKLLPANERYGgLDELMTTLREYIDTTGRRVTLEWALIAFQNDGVDTARQLGKLVKKYglrrdMVHVNVIPLNPTQGFEGAKPSNiQRVNAFCDCLQnEFGITATPRVRRGIDIDAGCGQLKAKIQKREE 468
                 78899*********************************************9863332222222111122332222226789999*************************5336779****************************************99877666778899****************************999..******************99543345789*************************55****************************************9987652222268******************98578*******972569********************998655443 PP

>> TIGR04038  tatD_link_rSAM: radical SAM protein, TatD family-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.1e-09   1.7e-06      16     143 ..     218     348 ..     208     399 .. 0.71

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2.1e-09
   TIGR04038  16 nrCtlaCqfCikek...ekevkgyelklekepsveeviaaikdlkkyeEvvFcGyGepllrlevvkevakaikek.ga...kvRvntdGlanlvhkrnilpelagl.vdalsisLnaqdeetyqkicrpklkeday 143
                   C + C+fC+  +   ++++   e+  +    ++e+ ++ +  k+ +++vF G Gepl +   v++  ++i ++ g    ++ v t G    +  r+   e +++    l++sL  +++++ +k+  ++     y
  MMETSP1061-20121228|1807_1 218 AGCAMGCVFCATGQmgfARQLSSDEILEQVSRFASELKRQNDSSKRLSNIVFMGMGEPLANYRNVVKAVNRINSElGIgarRITVSTVGVVPSI--RKLYAEGTDMpQVRLAVSLHCANDAERTKLLPANER---Y 348
                 57*********988888899999999999999999**************************987777777777666654246666666665544..555555555523368889988888887777665444...3 PP

>> TIGR04100  rSAM_pair_X: radical SAM enzyme, TIGR04100 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     5e-07   0.00041      18     110 ..     220     315 ..     205     385 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5e-07
   TIGR04100  18 CpcaCtfCirkekdgvgd..sdslWlehePsleeilaaldkfdlskyeelvfCGyGePlerldallevakyikekskl...kirintnGladlihgrk 110
                 C+  C+fC   +   + +  sd++  +    + e++ +      +++ ++vf G GePl +  ++++++++i ++  +   +i + t G++  i++  
  MMETSP1061-20121228|1807_1 220 CAMGCVFCATGQMGFARQlsSDEILEQVSRFASELKRQN--DSSKRLSNIVFMGMGEPLANYRNVVKAVNRINSELGIgarRITVSTVGVVPSIRKLY 315
                 888899998877765543215666666666666666543..3456799*************************9965522278889999887776644 PP

>> TIGR04136  rSAM_FibroRumin: radical SAM peptide maturase, FibroRumin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.5e-06     0.002     101     179 ..     220     291 ..     209     399 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.5e-06
   TIGR04136 101 cnlackycflgnndkekrknfakelmskeiaekavefflkqlkaveldaedrkavvifyg.geplvnyevlkyvvekins 179
                 c + c +c  g+        fa++l s ei e+ v  f  +lk  +  + +r + ++f g gepl ny  ++  v++ins
  MMETSP1061-20121228|1807_1 220 CAMGCVFCATGQ------MGFARQLSSDEILEQ-VSRFASELKRQNDSS-KRLSNIVFMGmGEPLANYRNVVKAVNRINS 291
                 777788887775......579999999999997.667788999876555.888999999889*****************8 PP

>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.1e-05    0.0087     133     183 ..     204     253 ..     174     257 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.1e-05
   TIGR00089 133 srseeklrafikiqeGCdkkCtyCivpsaRGrerSrslekileevkelvsk 183
                 + ++++++a+i+ q GC   C +C++ ++ G  r  s+++ile+v + +s+
  MMETSP1061-20121228|1807_1 204 PYEDGRYTACISSQAGCAMGCVFCATGQM-GFARQLSSDEILEQVSRFASE 253
                 4556999******************9986.99*************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.66
# Mc/sec: 1313.89
//
Query:       MMETSP1061-20121228|1812_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1061-20121228|1813_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.28    7.6   4.4       0.34    7.3   3.0    1.1  1  TIGR03958 monoFe_hyd_HmdC: 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC


Domain annotation for each model (and alignments):
>> TIGR03958  monoFe_hyd_HmdC: 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   3.0   8.3e-05      0.34     431     492 ..      27      88 ..      22      92 .. 0.93

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 8.3e-05
   TIGR03958 431 kldglveevlisdadawvekvtvkilneeldievyaangddkkalesadksiitsviPeial 492
                 +l++  e  ++sda+  ve+  v+ ++ ++d+  +  + dd  a+e+ ++ ++t   P+i +
  MMETSP1061-20121228|1813_1  27 ALEEEEEAPVVSDAEVEVESELVNEIEVDVDVVESELEVDDGVAIEEEEAPVVTEEAPDIEE 88 
                 6788888999*******************999999***********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 590.81
//
Query:       MMETSP1061-20121228|1809_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|1808_1  [L=1196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-87  292.1   0.0    2.4e-69  232.5   0.0    2.9  2  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    9.9e-46  154.4   0.1    2.2e-20   70.7   0.0    3.1  3  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
    2.2e-45  152.8   0.3    1.6e-34  116.9   0.0    3.2  2  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
      5e-08   30.5   0.0      1e-07   29.5   0.0    1.4  1  TIGR01134 purF: amidophosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.5   0.0   2.4e-72   2.4e-69      16     384 ..      65     463 ..      53     472 .. 0.81
   2 !   55.5   0.1     1e-18   1.1e-15     449     515 ..     475     556 ..     463     558 .. 0.83

  Alignments for each domain:
  == domain 1    score: 232.5 bits;  conditional E-value: 2.4e-72
   TIGR01536  16 eeeaikemletlahRGPDaegvwkd........ekeenailghrRLaiidlseg..aQPlsnek.........evvivfnGEIYNheeLreele.ekGyeFe..tksDtEViLaayeewg.eelverLeGmFAfalwdek....kgelflaRDrlGikPLYyase.........qgkllfaSEiKallalk...eikaeldkealaelltlqlvptektlfkevkelepakal.dgeekleeywevekeevkeseeelveelrelledavkkrlvadvpvgvllSGGlDSslvaaiakkeak..........sevktFsigfedskdldeskaarkvadelg....tehkevliseeevlkeleevilale..eptairasiplyllsklarekgvkVvLsGeGaDElfgGYeyfreakaeeale 384
                 ++ea+++ ++ l hRGPD+  +           +++++  +gh RLai+d s+   + P++ +           v +  nGEIYNhe++ +++  ++G + +  + sD+EVi +a+ ++g  ++ ++L+GmF f+ ++e     k + f+aRD++GikPLYy+++         + +++f+SE+Kal+ +    ++ a +++++ ++  +l+      +++ e+ + +      dg++k                  + +e+re++++avkkr++adv +g +lSGG+DS +v+  +    +          +++ tF++g+e+s+d+    aar ++++lg    ++h+   ++++ev++ ++++i+++e  e   ir++ip +ll+++a ++ vk+vL+GeGaDElf+GY yf++a+  ++++
  MMETSP1061-20121228|1808_1  65 DREALRQTTRILDHRGPDGYEISTGtvggdpdsANHARWSMGHTRLAIVDPSNRfaDMPFNLKFrtgaegsekIVHLAANGEIYNHEDIYKKMVdKDGWDHQriSGSDCEVIAHAFAKYGgPKTAAMLDGMFGFVAFEEDvqtgKITAFAARDPVGIKPLYYGRTlcsskdsdeAAAYVFSSELKALVGHAdpaTVVAIPPGHYWTPEEGLVC-----YYNPEWLRDDDYAPWeDGSHK-----------------VTDDEIREAFTKAVKKRMMADVDYGFFLSGGVDSCIVSHDLLPLYReermkefgddRPIPTFTVGMENSPDVM---AARGMVENLGgsknVTHHVRAFTPDEVFDLIPKIIYHMEtyEAELIRSAIPNWLLAERAAAD-VKMVLTGEGADELFAGYLYFQDAETPRQVQ 463
                 578999999**********99755599999985488999************9987789*99887777777543345667**********888761568777733799************99***************9775221134579*************8644322112124579************97777777888888888888885.....444444333322222122333.................33489********************************986665555567789*********************...7777777776444489***********************999999****************9.***********************9999887 PP

  == domain 2    score: 55.5 bits;  conditional E-value: 1e-18
   TIGR01536 449 sdllrakDrvsmahslEvRvPflDkelvelalsippelklr.........dgkeKvlLreaaee......llPeeileRkKe 515
                 + +l++ Dr++mahslE+RvPflD e+ +l++s++p+ k+          +g+eK +Lre++e+      ++P+ +l+R K+
  MMETSP1061-20121228|1808_1 475 NINLHRTDRMTMAHSLEARVPFLDTEFTKLVMSVDPKRKMVdseavrnntRGREKSMLRELFEGpnsdgnIIPQPVLWRAKA 556
                 4578888*****************************66653222222446789**********999999**********997 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.0   2.1e-23   2.2e-20      17     171 ..      65     256 ..      37     263 .. 0.72
   2 !   61.7   0.0   1.2e-20   1.2e-17     221     403 ..     282     474 ..     257     477 .. 0.70
   3 !   19.4   0.1   7.4e-08   7.6e-05     493     536 ..     474     518 ..     467     534 .. 0.87

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 2.1e-23
   TIGR03108  17 drellkrmnealahrGPdeegvhvep.G..........iglghrrlsiidlag..gkqPl.....anedgs...vvvvfnGeiynfkelvkelea.lG..hqfrtksdtevivhaWeeWGe.dcverlrGmfafalwdrkke....tlflardrlgvkPlyyall........edGalifgselkallahps 171
                 dre l++ +++l hrGPd+ ++ + + G           ++gh rl+i+d +   +  P+     + ++gs   v +  nGeiyn++++ k++    G  hq  + sd evi ha+ ++G  ++ + l Gmf f+ +++  +    t f ard +g+kPlyy+          e  a +f+selkal+ h +
  MMETSP1061-20121228|1808_1  65 DREALRQTTRILDHRGPDGYEISTGTvGgdpdsanharWSMGHTRLAIVDPSNrfADMPFnlkfrTGAEGSekiVHLAANGEIYNHEDIYKKMVDkDGwdHQRISGSDCEVIAHAFAKYGGpKTAAMLDGMFGFVAFEEDVQtgkiTAFAARDPVGIKPLYYGRTlcsskdsdEAAAYVFSSELKALVGHAD 256
                 899***************99887643111222222222679*********99722345543332223444411166677**********99875414422677789************975288899**********87654222278**************8532333322234679**********9976 PP

  == domain 2    score: 61.7 bits;  conditional E-value: 1.2e-20
   TIGR03108 221 rqyWdvsfaaeaslseeeleeelierlkeavelrlvadvPlGaflsGGvdssavva.........llakl.seePvktcsiafddaa..fdeaeyakkvaeryktehkvetveadd.fdlvdrlaglydePfad..ssalPtyrvcelarkrvtvalsGdGgdelfaGyrryrlhlaeervrsklPlalrkplfgllG 403
                 +   d  +a+ +  s++   +e+ e + +av+ r++adv  G flsGGvds  v            + +   ++P+ t +++++++   +      +++    ++ h+v+  ++d+ fdl+ +++   +   a+   sa+P + + e a+  v+++l+G+G+delfaGy  ++   + ++    +   lr+ ++g+lG
  MMETSP1061-20121228|1808_1 282 EWLRDDDYAPWEDGSHKVTDDEIREAFTKAVKKRMMADVDYGFFLSGGVDSCIVSHdllplyreeRMKEFgDDRPIPTFTVGMENSPdvMAARGMVENLGGSKNVTHHVRAFTPDEvFDLIPKIIYHMETYEAEliRSAIPNWLLAERAAADVKMVLTGEGADELFAGYLYFQDAETPRQ----VQNELRR-IYGMLG 474
                 44457788888999999999*******************************99975221111111233322478*********98641133444666776666777777776665439****9976544333443369*******************************75544433333....4444444.566666 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 7.4e-08
   TIGR03108 493 Gdil.tkvdrasmavglevrvPlldhrlvewaaklpsslklrgae 536
                 G+i+  + dr +ma++le+rvP+ld ++ + + ++  + k+ ++e
  MMETSP1061-20121228|1808_1 474 GNINlHRTDRMTMAHSLEARVPFLDTEFTKLVMSVDPKRKMVDSE 518
                 67752689**************************99999987765 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.9   0.0   1.6e-37   1.6e-34      16     386 ..      65     456 ..      61     472 .. 0.72
   2 !   27.2   0.1   2.3e-10   2.3e-07     456     496 ..     477     517 ..     453     528 .. 0.87

  Alignments for each domain:
  == domain 1    score: 116.9 bits;  conditional E-value: 1.6e-37
   TIGR03104  16 dvaavermaaelakrGPd....aeGvf.......aqgkvalGhrrlkiidlsea.sqqPmv........daelglalvfnGaiynykelreeleal.G..yrffsegdtevilkayhawGe.elvsrleGmfafaiwerdsg..r..lllardrlGikPlylaedekrlrfasslpallaaggvdtkidavalhhylsfhavvPaPrtilkGvrklepatlltvekdGkleeksywsleakreadd...aalseedwkdavlealrlavkrrlvadvpvGvllsGGldssllva....llaeagved......lktfsvGfedvggekgdefeysdliaerfetrhhkllipeeevlealpeavaams..ePmvshdavafyllseevskevkvvqsGqGadevfaGyhwyPkl 386
                 d +a+++ +  l +rGPd    ++G++       ++++ ++Gh rl+i+d s++ ++ P+          +e  + l+ nG iyn++++ + ++++ G  ++  s +d evi +a+ ++G  +    l Gmf f+ +e+d +  +   + ard +GikPly+ ++  + + + +  a + ++++++             ha    P+t++     ++p+++ t e+   +    y+++e  r++d    ++ s++   d+++ea+++avk+r++adv+ G +lsGG+ds ++      l  e  +++      + tf+vG+e+ +++ +      +l  ++  t+h + + p +ev++ +p+ + +m   e  + + a+  +ll+e+ + +vk+v +G Gade+faGy ++   
  MMETSP1061-20121228|1808_1  65 DREALRQTTRILDHRGPDgyeiSTGTVggdpdsaNHARWSMGHTRLAIVDPSNRfADMPFNlkfrtgaeGSEKIVHLAANGEIYNHEDIYKKMVDKdGwdHQRISGSDCEVIAHAFAKYGGpKTAAMLDGMFGFVAFEEDVQtgKitAFAARDPVGIKPLYYGRTLCSSKDSDEAAAYVFSSELKAL----------VGHA---DPATVV----AIPPGHYWTPEEGLVC----YYNPEWLRDDDYapwEDGSHKVTDDEIREAFTKAVKKRMMADVDYGFFLSGGVDSCIVSHdllpLYREERMKEfgddrpIPTFTVGMENSPDVMAARGMVENLGGSKNVTHHVRAFTP-DEVFDLIPKIIYHMEtyEAELIRSAIPNWLLAERAAADVKMVLTGEGADELFAGYLYFQDA 456
                 66788888888999999833332344422222113456789**********9973555653222221112344467888**********999876535336778**************9752788999*********99865224225789***********9886665555555555555444332..........2343...577866....599**99988765555....5555555554440004556777789******************************99753211154555444312222378**************99999888888888888887766.689********99964589999*********************************999766 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 2.3e-10
   TIGR03104 456 PvkrvdnmtmawGlearvPfldhelvelaariPaelklkde 496
                  + r d mtma  learvPfld e+  l +++ ++ k+ d 
  MMETSP1061-20121228|1808_1 477 NLHRTDRMTMAHSLEARVPFLDTEFTKLVMSVDPKRKMVDS 517
                 5789********************************99876 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0     1e-10     1e-07      66     200 ..     103     252 ..      88     279 .. 0.69

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1e-10
   TIGR01134  66 vaagHvRYsTaGsskseeaqPlvvssavg.....g.lalaHNGnlvnaeelreeleeeg...rkfntssDsevllallaeeeeskeelekavaevlervkGaYalvlmsee......klvavrDPvGvrPLvlgrkedg.........yvvaSEsvAld 200
                  ++gH+R +    s++    P+  ++++g     + + la NG++ n e++ +++ +++   ++  + sD ev+++++a+      +++++       + G + +v+++e+      +++a+rDPvG++PL +gr+            yv++SE  Al 
  MMETSP1061-20121228|1808_1 103 WSMGHTRLAIVDPSNRFADMPFNLKFRTGaegseKiVHLAANGEIYNHEDIYKKMVDKDgwdHQRISGSDCEVIAHAFAKY--GGPKTAAM-------LDGMFGFVAFEEDvqtgkiTAFAARDPVGIKPLYYGRTLCSskdsdeaaaYVFSSELKALV 252
                 56799999999999889999998887765322222457888***********9999988887777899**********973..22222333.......34555555544332222126789************97533222345678888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.67u 0.17s 00:00:00.84 Elapsed: 00:00:00.81
# Mc/sec: 1948.88
//
Query:       MMETSP1061-20121228|1816_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-32  110.2  24.7    2.3e-28   97.0  11.5    2.4  2  TIGR00797 matE: MATE efflux family protein
    4.8e-05   20.1   0.9    8.7e-05   19.2   0.7    1.3  1  TIGR02900 spore_V_B: stage V sporulation protein B
  ------ inclusion threshold ------
      0.069   10.2   0.6       0.12    9.4   0.4    1.3  1  TIGR01478 STEVOR: variant surface antigen, stevor family


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0  11.5   1.7e-31   2.3e-28       2     277 ..     133     431 ..     132     443 .. 0.81
   2 !   17.8   0.7   1.9e-07   0.00026     292     376 ..     465     549 ..     459     567 .. 0.88

  Alignments for each domain:
  == domain 1    score: 97.0 bits;  conditional E-value: 1.7e-31
   TIGR00797   2 ailaniaqpllslvDtafvG......hlgpveLaavglgslvlmvliiillglltattalvaqavGagnqq..rlsrsasqslllalllgllvavvlifaakpllsl...mgadeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilifkfglGivGaAlAtvisqylmflllllyilk...........akkvdlknegllkpdwealkrllklglplllrvilvsflv.tllallvarlG.stalAahqvalqvesllfmlafGlaiAvsalv 277
                  ++  +aqpllslvDtafvG        ++++La +g +++++  +  ++++l +att l + a++++ +q  ++  ++ ++  +a+  g+ ++++l+++a+pll+l   +gad+++ ++a +Y++i+ +++p  ll  ++q +l Ga+d+ tpli+ + ++v+n++ d+ l+ + g+G++GaA+At+++q+++  +ll   ++           +kk   + +  +  +  + +++l    p+l   +   +++ +++++ +a  G  t lAahq++l++  +++ +   ++ +++++v
  MMETSP1061-20121228|1816_1 133 CLGLWVAQPLLSLVDTAFVGlsakvpAQSAAQLASLGPATTFFDGATYLFAFLNVATTNLYSTAIAQKGEQsdEAEAVVCTASRVAMRCGIGIMFFLLAFARPLLALyigHGADPALIDSAVDYVKIRAFSMPTSLLLGVVQAALLGAKDSVTPLIAILYSTVVNVFGDFYLVRVAGMGLRGAAIATLLAQWAATFALLGPARRrlvrdhslglwKKKKPTT-VNGSGSNLVTSRAFLGFAAPVLTLILGKLAAFgFMTHSAAAVPGqPTPLAAHQIILSLFFFVSPFMEVISQTAQTFV 431
                 556679**************555333347889999999999*************************98776558999999*************************9943345*************************************************************************************9999998887755555543333333.22333556666777777777765554333333134445555555589999999999998888777777776666666 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1.9e-07
   TIGR00797 292 varvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawvi 376
                    + lklg++ ++v+a +  l++ f+ +++t+dp v++ ++ l  ++    +++a   v +G+l +  + k++a v v++++++
  MMETSP1061-20121228|1816_1 465 LGTYLLKLGFMSATVVASLASLIPAFFGGMLTSDPVVKNSVKPLAKYLWAGAFLTAPVAVSEGILLARRELKYLAGVYVLTTALL 549
                 567889*******************************************************************999888877664 PP

>> TIGR02900  spore_V_B: stage V sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.7   6.4e-08   8.7e-05     315     421 ..     211     324 ..     186     334 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 6.4e-08
   TIGR02900 315 ieqalkislllglitvvillviadelgkllykr.......ddlgefikvlalsvlflylsatlqsiLqgLgkqkvalrnslivaivkiillfvLtsipslnilGaalaliitsv 421
                 +  a ++++  g+  +  ll++a +l++l  ++       d++ +++k+ a+s++   l  ++q+ L g +   + l+  l+ ++v++   f+L+++  +++ Gaa+a ++++ 
  MMETSP1061-20121228|1816_1 211 VCTASRVAMRCGIGIMFFLLAFARPLLALYIGHgadpaliDSAVDYVKIRAFSMPTSLLLGVVQAALLGAKDSVTPLIAILYSTVVNVFGDFYLVRVAGMGLRGAAIATLLAQW 324
                 55677899999999999999999999999886433444447899***************************************************************9887765 PP

>> TIGR01478  STEVOR: variant surface antigen, stevor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.4   8.9e-05      0.12     189     288 ..     142     241 ..     126     243 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 8.9e-05
   TIGR01478 189 lssvl.ltklGiaaaktaaieaiagslsvdiasklskalaginflnssslesalvtavgivsgaadeaesaasaatsiflPyGiaalv.LiilvvvliiLYi 288
                 l+s++ ++ +G++a + a   a  +sl+  +++ +  a  ++ fln  +  + + ta++     +deae ++ +a+ + + +Gi ++  L++ +  l+ LYi
  MMETSP1061-20121228|1816_1 142 LLSLVdTAFVGLSAKVPAQSAAQLASLGP-ATTFFDGATYLFAFLNVAT-TNLYSTAIAQKGEQSDEAEAVVCTASRVAMRCGIGIMFfLLAFARPLLALYI 241
                 56666244578988888887777777774.5667777777888888777.8888888887778899******************987526667777888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 2451.80
//
Query:       MMETSP1061-20121228|1819_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-15   54.2   0.1    1.6e-13   48.0   0.1    2.0  1  TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1)


Domain annotation for each model (and alignments):
>> TIGR00574  dnl1: DNA ligase I, ATP-dependent (dnl1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.1   3.9e-17   1.6e-13     335     400 ..      13      98 ..       2      99 .] 0.80

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 3.9e-17
   TIGR00574 335 aeeiekflneaisegcEGlvvKnlk....................siYepgkRgenwlKvkpeyleelgdnlDLvviGaylGkgkr 400
                    i   l eai+ g+EGl++K l                     s Ye+g R++ wlKvk++y+ ++ d++D+v iGa +G g++
  MMETSP1061-20121228|1819_1  13 ETRITSYLTEAIEGGAEGLMIKLLGkksnavtkstttekqcegvsSLYEAGTRSHCWLKVKRDYVAGFSDTIDVVPIGAWWGSGRK 98 
                 556889999***********985533333444455555667788899*************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 502.57
//
Query:       MMETSP1061-20121228|1821_1  [L=719]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 3272.42
//
Query:       MMETSP1061-20121228|1824_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|1830_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1600.90
//
Query:       MMETSP1061-20121228|1828_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-09   32.6   0.0    4.6e-09   32.5   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
      0.021   11.6   0.0      0.032   11.0   0.0    1.2  1  TIGR02906 spore_CotS: spore coat protein, CotS family


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   2.2e-12   4.6e-09       5     187 ..     109     301 ..     105     357 .. 0.72

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 2.2e-12
   TIGR03903   5 kvaikllRedaaeeerlvaRFrReialCarL....shPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlp.....gvedade...atltrttevlGsPaYaaPeqLRgepvta..ksDlYaWGLivleCLtGkr 187
                 k a k++  ++ ++ +++   ++e+a+ + +     hP+++  lD  + e+ +l     +     l   +++ G  p +      +q+LD+l+   + Gv hRD+  +ni+v   d+ + + v+D G+   +p     +v+d+ +    +l +     G P+Y +Pe L  e++    + Dl+a G+i++  L G +
  MMETSP1061-20121228|1828_1 109 KAAGKIMSWQKINDLQHIEDPKKEVAAMQFIgrggGHPHVMGALDVLQDEE-YLILFMPFCTSGDLFGFVQQAGRFPENMARYWFIQILDGLSYLQRMGVCHRDMSLENILV---DEYTRSVVIDLGMCLRVPydngeQVGDVSAgglRRLIQPLTPCGKPNYISPEILGSEAPFDgfAIDLWATGVILFIMLVGLP 301
                 555555555555555555555666555544422225999999999988777.6666677888888999999****************************************9...56677899****9876654333345566551114555666677***************9753378********999888865 PP

>> TIGR02906  spore_CotS: spore coat protein, CotS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.6e-05     0.032     187     215 ..     204     233 ..     200     236 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.6e-05
   TIGR02906 187 krglcHqDyayhNillkd.nevyviDlDsv 215
                 + g+cH+D++ +Nil+++     viDl  +
  MMETSP1061-20121228|1828_1 204 RMGVCHRDMSLENILVDEyTRSVVIDLGMC 233
                 6789**********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1510.11
//
Query:       MMETSP1061-20121228|1829_1  [L=1012]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.41
# Mc/sec: 3257.88
//
Query:       MMETSP1061-20121228|1833_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1174.25
//
Query:       MMETSP1061-20121228|1832_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.6   0.0      0.016   12.3   0.0    1.1  1  TIGR02955 TMAO_TorT: TMAO reductase system periplasmic protein TorT


Domain annotation for each model (and alignments):
>> TIGR02955  TMAO_TorT: TMAO reductase system periplasmic protein TorT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     4e-06     0.016     113     209 ..      12     108 ..       7     117 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4e-06
   TIGR02955 113 eylakkhkkdsgklklallpGPknaGGtk..evtqGlrealedsdveivaiewadndkelqrnllqellkkaeeidylvGsavaievaiselkskkkkd 209
                 ey +++  k+ ++  + ++ G +n+GG k   vt+ l +   +s+v +     ++n  e   ++ +++  ++e  +yl+G+  + e+ i+el+ k+ + 
  MMETSP1061-20121228|1832_1  12 EYYTEEVAKHNTEGDVWMIIGNDNNGGPKvyDVTRYLDDHPGGSEVLLD--VAGQNADEFFEDIGHSTEARKELAKYLIGTYKMTEAEIEELRAKEAEA 108
                 6777888888899999***********9844689999999999998653..468999999999999999999999******************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 823.36
//
Query:       MMETSP1061-20121228|1834_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 597.42
//
Query:       MMETSP1061-20121228|1837_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    9.5   6.4       0.19    9.1   4.5    1.1  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   4.5   4.6e-05      0.19      24      68 ..      33      78 ..      21      97 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 4.6e-05
   TIGR03593 24 dpkpepqkppaaaqqaesqsaa..aaaaasaaaaasadapsaaaaaa 68
                +pkp+ q++++++qq+++ +++   a ++s+++++ +d+++a+a   
  MMETSP1061-20121228|1837_1 33 TPKPTCQQQQQQQQQQQQ-QQQlqRARESSNETNTDTDTNDAKAFRL 78
                445554444444444333.3334544555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       375  (0.0914188); expected 82.0 (0.02)
Passed bias filter:                      222  (0.0541199); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.22
# Mc/sec: 1379.89
//
Query:       MMETSP1061-20121228|1836_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-41  137.9   0.7    3.1e-41  137.6   0.5    1.0  1  TIGR01046 S10_Arc_S20_Euk: ribosomal protein S10
    1.8e-14   51.6   0.2    2.2e-14   51.4   0.1    1.0  1  TIGR01049 rpsJ_bact: ribosomal protein S10


Domain annotation for each model (and alignments):
>> TIGR01046  S10_Arc_S20_Euk: ribosomal protein S10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.5   1.5e-44   3.1e-41       1      98 [.      18     115 ..      18     116 .. 0.98

  Alignments for each domain:
  == domain 1    score: 137.6 bits;  conditional E-value: 1.5e-44
   TIGR01046   1 qkarikltstnvkslekvceqlkkiaektgvklsGPvplPtkrlrvvtrksPdGeGsktwdrwelrihkrlidleadervlrqimkikvpedveieie 98 
                 +++ri+lts+nv ++ek c++lkk a ++ +++sGPv++Ptk+lr++trk+P+GeG++twdr+e+rihkrlidl+a++ v++qi++i+++++vei+++
  MMETSP1061-20121228|1836_1  18 HRIRITLTSRNVANVEKCCADLKKAALEKKLHVSGPVRMPTKKLRITTRKAPSGEGTNTWDRFEMRIHKRLIDLHAPSDVVKQITSIQIESGVEIDLT 115
                 79*********************************************************************************************987 PP

>> TIGR01049  rpsJ_bact: ribosomal protein S10
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.1   1.1e-17   2.2e-14       2      98 ..      19     115 ..      18     116 .. 0.93

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 1.1e-17
   TIGR01049   2 kiriklksydkelldqsikkivetvkrtgakvkgpipLPtkkekytvlrsphvn.kksreqfeirthkRlidivevnsktldaLmkldlpagvdveik 98 
                 +iri l+s + +++++ ++ + +++ + + +v+gp+ +Ptkk ++t  ++p  +  +  ++fe+r hkRlid+  ++ ++++ ++++++ +gv+++++
  MMETSP1061-20121228|1836_1  19 RIRITLTSRNVANVEKCCADLKKAALEKKLHVSGPVRMPTKKLRITTRKAPSGEgTNTWDRFEMRIHKRLIDLHAPS-DVVKQITSIQIESGVEIDLT 115
                 8**************************************************98725788**************9886.68999************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 826.67
//
Query:       MMETSP1061-20121228|1838_1  [L=897]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 4082.56
//
Query:       MMETSP1061-20121228|1839_1  [L=863]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.43
# Mc/sec: 2648.99
//
Query:       MMETSP1061-20121228|1840_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   13.8   0.1      0.011   12.4   0.0    1.6  2  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.7e-06     0.011     102     206 ..      17     123 ..      13     130 .. 0.79
   2 ?   -3.3   0.0      0.16   6.4e+02      23      61 ..     178     217 ..     178     224 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.7e-06
   TIGR01932 102 kyYlatgggnisaAevlikrkiedrlRse...igklelkeivrssrdeqldtleakealeaeakknkiaieiekgreilkkeilqiaesdlkdlGievvDvrikkikl 206
                  +Yl+ g+ +    +++ k+ ++ ++ ++   i    l  ++r+s+++    ++ k   ++  k nk   +  k +++ kk+   + ++ l+d+ + ++D rik ik 
  MMETSP1061-20121228|1840_1  17 SFYLSSGESQTVVSNTMHKSEVHRVVYDIaraIQSSALLSLLRDSNNDGSPESNHKRGHHSAPKSNKSDLKR-KRKRKRKKKKHGTPHQCLADIPLSILDERIKPIKQ 123
                 69******99999999999888888765322388999**********8888888888888878888666664.44444555667788899**************9986 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.16
   TIGR01932  23 ikEgergiilrfGkilkddndk.alvyeaGLhvkiPlies 61 
                 +kE +r  ++r+ +i   +++    ++  G + +iPl ++
  MMETSP1061-20121228|1840_1 178 VKEENRNSVVRYLHIAEVEDEYtIGIFVFGPNQRIPLHDH 217
                 6899999999999999877765145888999999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1987.84
//
Query:       MMETSP1061-20121228|1842_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.3    3.5  25.9         12    2.9  18.0    1.3  1  TIGR02794 tolA_full: protein TolA
        8.3    3.3  16.3         14    2.6  11.3    1.4  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9  18.0    0.0056        12      40     127 ..     337     423 ..     314     425 .] 0.41

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0056
   TIGR02794  40 vlvDpaavaqqanrlqqqekkaakke.......pkpeepkqerqkkleqqaeeakkkqaa..eqarqkelekqraaaekaakkaeeaakekeekkkq 127
                 ++ D         ++++++ k+ k++       +kp ++   + ++l+qq++ +++ +++  eq  ++ le+q++ +++ ++++e++ +++ +++ q
  MMETSP1061-20121228|1842_1 337 TIND---------PPTTAALKTLKPPkrlesrpKKPLRVASLQPSQLRQQEQHLEQHREQhlEQHLEQHLEQQQQHQQQ-EQQQEQQHQQQHQQQHQ 423
                 3333.........333333333333333333333566666666666666666554444431144444444333333333.22233333322222222 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  11.3     0.007        14      81     134 ..     370     424 ..     346     425 .] 0.80

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.007
   TIGR03752  81 eNeklkkenerl.kkreesvderiqqaleaekkelkkekeqlkeeqakleellde 134
                 + ++l++++++l ++re++++++++q+le+++++ ++e++q +++q++ ++++++
  MMETSP1061-20121228|1842_1 370 QPSQLRQQEQHLeQHREQHLEQHLEQHLEQQQQHQQQEQQQEQQHQQQHQQQHQQ 424
                 5567888888872457889999999999999999999999988888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       649  (0.158216); expected 82.0 (0.02)
Passed bias filter:                      224  (0.0546075); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 1402.38
//
Query:       MMETSP1061-20121228|1841_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 2023.83
//
Query:       MMETSP1061-20121228|1846_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.6    5.7  12.3       0.16    9.7   1.6    2.2  2  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.6   3.8e-05      0.16     108     134 ..      97     123 ..      78     129 .. 0.58
   2 ?    1.4   1.8     0.014        56     120     145 ..     188     200 ..     163     203 .] 0.44

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 3.8e-05
   TIGR04032 108 tgeanlvavvavaavlavvvvaaVAva 134
                 ++++++ ++va+++v+a+vv aa+A++
  MMETSP1061-20121228|1846_1  97 RARVGMAVAVAAVVVAAAVVTAAAALG 123
                 455555555555555555555555544 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.014
   TIGR04032 120 aavlavvvvaaVAvatvalaavavnp 145
                  av+             ++++vav++
  MMETSP1061-20121228|1846_1 188 DAVV-------------VAVVVAVVV 200
                 2222.............222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 864.32
//
Query:       MMETSP1061-20121228|1843_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 837.19
//
Query:       MMETSP1061-20121228|1844_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 2199.82
//
Query:       MMETSP1061-20121228|1845_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.41
# Mc/sec: 1278.04
//
Query:       MMETSP1061-20121228|1849_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.1    3.5  10.8        3.9    3.6   7.5    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
          6    3.2  11.0        6.2    3.2   7.6    1.0  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   7.5    0.0019       3.9     337     381 ..       5      49 ..       1      64 [] 0.38

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0019
   TIGR02442 337 eekedeseekekeeskkqe.eeepgkddekeedekeeaeeeaesae 381
                  +k+d++ +++k+++k+++ + ++++dd++++d +++ +++++++ 
  MMETSP1061-20121228|1849_1   5 DDKNDDK-NDDKNDDKNNDkNANDNNDDKNDKDGEKKGDAPKRRNL 49 
                 2222222.33333333333122333444555555555555444322 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   7.6     0.003       6.2     243     285 ..       6      48 ..       1      60 [. 0.42

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.003
   TIGR01651 243 eaeaaeeeeesgeeeaaeaddddlsdeddedaetpgeakrpdr 285
                 +++  +++ ++ +++  + ++d+ +d++d+d e  g+a +  +
  MMETSP1061-20121228|1849_1   6 DKNDDKNDDKNDDKNNDKNANDNNDDKNDKDGEKKGDAPKRRN 48 
                 2222222223333333333334444445555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|1848_1  [L=1111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.25s 00:00:00.80 Elapsed: 00:00:00.96
# Mc/sec: 1527.50
//
Query:       MMETSP1061-20121228|1850_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 1060.31
//
Query:       MMETSP1061-20121228|1851_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1874.25
//
Query:       MMETSP1061-20121228|1852_1  [L=853]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.7   0.0      0.037   11.1   0.0    1.1  1  TIGR03622 urea_t_UrtB_arc: urea ABC transporter, permease protein UrtB


Domain annotation for each model (and alignments):
>> TIGR03622  urea_t_UrtB_arc: urea ABC transporter, permease protein UrtB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     9e-06     0.037     139     170 ..     755     786 ..     733     798 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9e-06
   TIGR03622 139 alvaigvlvavyllftrtefgvraratiqdke 170
                 + v ++vlvavy+ ftrt     a+at +d++
  MMETSP1061-20121228|1852_1 755 VPVLLAVLVAVYYFFTRTPNQGDAKATDDDDD 786
                 44679**************999****987653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 3216.76
//
Query:       MMETSP1061-20121228|1853_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.47
# Mc/sec: 2036.00
//
Query:       MMETSP1061-20121228|1856_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-09   34.8   0.2    8.5e-09   33.5   0.1    1.6  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.8e-06   25.6   0.7    1.8e-06   25.6   0.5    1.4  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    0.00027   18.9   0.0    0.00061   17.8   0.0    1.5  1  TIGR01068 thioredoxin: thioredoxin
    0.00075   16.0   0.0     0.0013   15.3   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
     0.0037   14.8   0.1     0.0096   13.4   0.0    1.7  2  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.1     1e-11   8.5e-09      18      84 ..      71     141 ..      60     148 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1e-11
   TIGR01126  18 lvefyaPWCGhCkklaPeyeklakelkkeeekvkia....kvdataekelaskfkvsgfPtlkffkkgkke 84 
                 +v +ya WC hC ++ P+y + ++++++ +ek+ +      v +  +++++++ +++++P + f++ ++++
  MMETSP1061-20121228|1856_1  71 VVTYYAHWCPHCLHFKPKYIEFSNQVHDLSEKLDVVvetfAVSCVPQSKICTDNQIHSYPNIIFYPPKSTN 141
                 799*********************9998777654432233699999*******************998875 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.5   2.1e-09   1.8e-06      23     425 ..      72     136 ..      66     145 .. 0.50
   2 ?   -4.0   0.1         2   1.6e+03     166     215 ..     187     196 ..     161     227 .. 0.40

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.1e-09
   TIGR01130  23 veFYAPWCGHCksLaPeYekAAeelkkkspk....vklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqsgPaskeletvedlekllekkevvvvgvfkdldselvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkkkkeeekeekveeeletdvealekfvkkeslplvgeftketaakifeskplkvlllnveeskkkseellekflevakkfkgkkvkfavadeeefgkeleelglkaekapavvilsleeskkyaleqeefssealkefvkdfldgklkpvlkSepipeddeepVkvvVgknfdeivldetKdVLvefYApWCGHCkkLapiYeelaekykkeedvviakldataNdvpefevegFPTilfvp 425
                 v++YA WC HC +++P+Y +  +++++ s k    v+   v +  ++++++  +++ yP                                                                                                                                                                                                                                                                                                                                                       i+f+p
  MMETSP1061-20121228|1856_1  72 VTYYAHWCPHCLHFKPKYIEFSNQVHDLSEKldvvVETFAVSCVPQSKICTDNQIHSYPN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IIFYP 136
                 555555555555555555444444433322211013334455555555555555555555......................................................................................................................................................................................................................................................................................................................................................55554 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 2
   TIGR01130 166 deaalkkleakkdevvlvkkkkeeekeekveeeletdvealekfvkkesl 215
                 ++ + k++                                        ++
  MMETSP1061-20121228|1856_1 187 RKTDEKHS----------------------------------------NT 196
                 11111111........................................11 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   7.5e-07   0.00061      18      76 ..      71     136 ..      61     149 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 7.5e-07
   TIGR01068  18 lvDfwAeWCgpCkmlaPvleelakelee.......kvkvvKlnvdeeqeiaakygirsiPtlllfk 76 
                 +v ++A+WC  C  + P   e+++++++        v+   +    +++i ++ +i+s P ++++ 
  MMETSP1061-20121228|1856_1  71 VVTYYAHWCPHCLHFKPKYIEFSNQVHDlsekldvVVETFAVSCVPQSKICTDNQIHSYPNIIFYP 136
                 899**************877776665541111111345556666779999************9985 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.5e-06    0.0013     375     445 ..      70     144 ..      62     152 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.5e-06
   TIGR00424 375 wlvvlyapwcpfcqameasyvelaeklagsgvk....vakfradgdqkefakqelqlgsfptillfpkrssraik 445
                  +v  ya wcp c  ++  y+e+++++    +k    v  f      ++    + q+ s+p i+++p +s++  k
  MMETSP1061-20121228|1856_1  70 RVVTYYAHWCPHCLHFKPKYIEFSNQVHDLSEKldvvVETFAVSCVPQSKICTDNQIHSYPNIIFYPPKSTNGTK 144
                 57899******************99876655442222678988887777777889************99988766 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.2e-05    0.0096      31      80 ..      47      97 ..      14     107 .. 0.71
   2 ?   -3.7   0.0       2.2   1.8e+03      44      64 ..     416     436 ..     395     437 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
   TIGR02738 31 eesltaaqdekpv.grkvlledyklvlfyqstCpyChqfapvLkqlsqqtg 80
                 +++t + d +p   +  +  +  +v +y   Cp+C +f p+  ++s+q++
  MMETSP1061-20121228|1856_1 47 VQEVTGDIDARPDfIYSSNYPNGRVVTYYAHWCPHCLHFKPKYIEFSNQVH 97
                4555555666655556677777789***********************986 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.2
   TIGR02738  44 grkvlledyklvlfyqstCpy 64 
                 ++  +++   +v    s+Cp 
  MMETSP1061-20121228|1856_1 416 EKSGFTNPADVVWPPTSSCPS 436
                 333344444444444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 2362.60
//
Query:       MMETSP1061-20121228|1855_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.4   0.1      0.068   11.2   0.1    2.1  1  TIGR01637 phage_arpU: phage transcriptional regulator, ArpU family


Domain annotation for each model (and alignments):
>> TIGR01637  phage_arpU: phage transcriptional regulator, ArpU family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.7e-05     0.068       5      74 ..     233     298 ..     231     307 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.7e-05
   TIGR01637   5 vDekktkanVkrfLeeyrrlrlilgesktpkksaslslvPpspenefssktEeaairnldaeqearaive 74 
                 +D+k  +++V ++L+ + ++  i++e+    k  +   +P + +++ +s  Ee+a+r+ ++ q ++a+  
  MMETSP1061-20121228|1855_1 233 FDQKNIRRRVYDALNVLMAMDIISKEK----KEITWKGLPTAAKQDLHSMEEEIAYRKHQIAQKKEALRD 298
                 799999999999999999998888877....66677789*************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 2455.80
//
Query:       MMETSP1061-20121228|1854_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1993.04
//
Query:       MMETSP1061-20121228|1858_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.10s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1814.85
//
Query:       MMETSP1061-20121228|1857_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 1641.61
//
Query:       MMETSP1061-20121228|1861_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|1859_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 2196.68
//
Query:       MMETSP1061-20121228|1860_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-17   61.0   0.0    3.2e-16   57.2   0.0    2.7  1  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
    2.6e-14   51.0   0.0    9.4e-14   49.2   0.0    2.0  1  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B


Domain annotation for each model (and alignments):
>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   1.5e-19   3.2e-16       1     263 [.     141     466 ..     141     467 .. 0.68

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 1.5e-19
   TIGR00446   1 iRvntLkievedllerleergvkl..kkteeegafevkesalsigatpey.llGlyllqeassmlPvlalepe..........ekerv....lDlaaaPGgkttqisall..kne.G......aivanevsksRvkvLianinRl...G...vlnvavinvDgRkfgavvlk..........fDriLlDaPCsgeGvirkdksrkknr....seedikeisklqkeLllaaidalkkgGvlvYstCsleveeneevvdyllrkrkdvvev..............lalgdealtankak...............eevkkalrvyPqsedveGFFvaklr 263
                 +R+ntL +++++++e ++ +  k    + + +  +   + + s +   +   +  ++lq++ss+   l +              k+rv    lD +aaPG kt +++al+   n+ G      +i a + s +R k L+  +  l   G   + n    ++   kfg+   +          + +i+lD  Csg+G+    +++ ++r    s+  ik++s+ q + l  a         +vYstCsl  +ene vv+ ll+ + + +                +      +     +               e+ k   rv P++  ++GFFva +r
  MMETSP1061-20121228|1860_1 141 VRINTLVADRDEVVEIIRAKADKVyiDPDVPDLLV-LDHTPQSRALLQDLvVSQKVILQDKSSCFSALCMVHGfgdnsndsngGKKRVkidyLDACAAPGNKTSHLAALVlaANQdGdasrvsTIHALDKSPDRYKLLKRRMGELvpqGfvqCHNEDFFEISKQKFGDNEDEkpimdkrfrnIKAIMLDPSCSGSGMTSNHTENSVSRdpffSNDRIKTLSNFQFQALHHATTDFPDVDRVVYSTCSLYIQENEGVVQRLLESNSGWEVCapacleswhrrglsV------K-----EnsedhgdrpilslpeEQAKCLIRVNPDEDSTNGFFVACFR 466
                 67777777777777777666544432455544444.333333333334430344577788888888777743222222333332333333449**************986443432444444489*************98776542222222566667777788888776656776667666789*************999888877633336788999*******9999999999999***********************99988777666654443332221......1.....12234466677889866677778***************998 PP

>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   4.6e-17   9.4e-14     170     436 ..     136     468 ..      91     469 .. 0.71

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 4.6e-17
   TIGR00563 170 qkPkltLRvnslkasreelldllaeeGvegeksd.aedavklekpiavtklpgf..eeGwvtvqDasaqlvatlL.....ePkneet.......i..lDvCaaPGGktthilela..kdq.......aqvvalDleehrlkrvkenleRLglt.iikveekdadk.ageke...eve.........kfDRiLlDaPCsalGvirRkPDlkwlrke....adiaeLvelqkeiLkaiaplvkkgGtLvYstCtllpeeneeqikaF............................laeledlplekrlpekvsesvssgglqilPhaeegDGFfiaklkkk 436
                 +  +  +R+n+l a+r+e+ + + ++  ++  +   +d + l+ +   ++l +       v +qD+s+ + a ++     +  n+         i  lD+CaaPG kt+h++ l+   +q       + + alD    r k +k  +  L  +  ++ ++ d  + +++k+   e e         ++  i+lD  Cs+ G+   + +    r +    + i +L ++q + L+           +vYstC+l  +ene ++++                              +++ d+p+   lpe++ +      +++ P++++++GFf+a +++k
  MMETSP1061-20121228|1860_1 136 II-PRYVRINTLVADRDEVVEIIRAKADKVYIDPdVPDLLVLDHTPQSRALLQDlvVSQKVILQDKSSCFSALCMvhgfgDNSNDSNggkkrvkIdyLDACAAPGNKTSHLAALVlaANQdgdasrvSTIHALDKSPDRYKLLKRRMGELVPQgFVQCHNEDFFEiSKQKFgdnEDEkpimdkrfrNIKAIMLDPSCSGSGMTSNHTENSVSRDPffsnDRIKTLSNFQFQALHHATTDFPDVDRVVYSTCSLYIQENEGVVQRLlesnsgwevcapacleswhrrglsvkenSEDHGDRPI-LSLPEEQAK----CLIRVNPDEDSTNGFFVACFRRK 468
                 33.4578*****************999999876669******98766666655445456899****9987765543333333333212222222255**************987422443323222246899***********99998886551344443333220222224332224555666668889******************99999754443789*******************************************9999999999999999999888887777777777887.566666554....558999***********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 1555.40
//
Query:       MMETSP1061-20121228|1863_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 1456.14
//
Query:       MMETSP1061-20121228|1862_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   23.2   0.8    2.1e-05   22.5   0.6    1.3  1  TIGR00293 TIGR00293: prefoldin, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.6   5.1e-09   2.1e-05      17     116 ..      78     182 ..      64     192 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 5.1e-09
   TIGR00293  17 alqaeiaalraliaeleeaietleslkka....egkevLVpvgaglyvkakvkdadkvlVs..iGagyyvekdleeAieilkkkieelekaieklqeelqelasea 116
                 +l+++ ++ +  i  +e++++ +++l+++    e  ++  ++  ++y ka+v+  +  +V+  +Ga+++ e ++ eAi++l ++ e+ +k+++ +++ l+ +++++
  MMETSP1061-20121228|1862_1  78 SLSQKKQNYELKIPDIEKSLALIKNLQSKegsgETVTTRYNLADNVYGKAEVDT-SVGIVNlwLGANVMLEYTYQEAIDFLSQNLETCQKESKLVKDDLAFVRDQI 182
                 6777777778888999***********99774555557789**********987.666776337********************************9999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1326.18
//
Query:       MMETSP1061-20121228|1867_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-41  137.8   0.0    1.2e-40  137.3   0.0    1.1  1  TIGR02415 23BDH: acetoin reductases
    5.1e-36  122.4   0.0    7.1e-36  121.9   0.0    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.1e-34  116.7   0.0    3.2e-34  116.2   0.0    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    8.2e-32  108.5   0.1    1.1e-31  108.0   0.0    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.2e-27   95.0   0.0    1.6e-27   94.5   0.0    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    2.3e-26   90.5   0.4    3.2e-26   90.0   0.3    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.7e-23   80.6   0.3    4.3e-22   76.6   0.2    2.0  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    5.4e-20   69.4   0.1    2.7e-19   67.1   0.1    1.8  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    1.5e-19   67.7   0.1      3e-19   66.7   0.1    1.4  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      3e-13   47.5   0.1    4.5e-13   46.9   0.1    1.2  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    9.7e-13   45.8   0.0    1.5e-12   45.2   0.0    1.1  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    1.8e-06   25.4   0.0    2.5e-06   24.9   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
    2.9e-05   21.5   0.0      4e-05   21.1   0.0    1.1  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    0.00028   17.9   0.0    0.00046   17.2   0.0    1.3  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase


Domain annotation for each model (and alignments):
>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.3   0.0   4.2e-43   1.2e-40       1     247 [.      18     262 ..      18     266 .. 0.92

  Alignments for each domain:
  == domain 1    score: 137.3 bits;  conditional E-value: 4.2e-43
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakd.Gfa.vavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilv 247
                 kva+vtG++qG+G+a   rL +d G   ++v+  ne++ ++ akel+++   a++v++d++  ++  ++++ + e +G+ld+lvn a  +   ++ + t+e+ +++ nvn  + +f +q aa+ +++++++G iin +s a+  ++p+l+ay  +k a+   t+ aa  La + i vna a G ++t+  ++i++kl    g + ++k     ++   Gr  + e+va +++f as +s  +tG +i  
  MMETSP1061-20121228|1867_1  18 KVAVVTGSTQGLGEATL-RLFRDrGCRgLVVTGRNEQHGRRLAKELTSATCTAIFVRADLACIDDCRNLMKVTDEAFGTLDILVNAAATTDRGSLWDTTPEDYDRIMNVNTRAPFFLMQDAARIMEREGVEGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAWSRIRVNALAIGWMDTPGEDTIQRKLHCSPGENWKQKG---EDSQPFGRLLKTEEVARCIAFCASAESGMMTGCVIDF 262
                 89************965.66665476438999999***************************************************************************************************************************************************************998766665444433...3345689*************************98855 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.0   2.4e-38   7.1e-36       1     235 [.      20     263 ..      20     266 .. 0.93

  Alignments for each domain:
  == domain 1    score: 121.9 bits;  conditional E-value: 2.4e-38
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkr.sGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmtekls........ekvkkkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvd 235
                 a+vtG+++g+G+a+ + + ++g++ ++ + ++e++ ++la+el++a  +a+ v++d++  +++++l++ + e++g++dilvn A  t  + l   + ed+d++++vn ++ f +++ +++ m ++  +G+iin+ss +++   +  a Y  sK+ l   tk  a  la   i+vna+a G+++t+  ++++        e+ k+k +++ p +rl k+eeva+++af as e+  +tG v+  d
  MMETSP1061-20121228|1867_1  20 AVVTGSTQGLGEATLRLFRDRGCRGLVVTGRNEQHGRRLAKELTSATCTAIFVRADLACIDDCRNLMKVTDEAFGTLDILVNAAATTDRGSLWDTTPEDYDRIMNVNTRAPFFLMQDAARIMEREGvEGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAWSRIRVNALAIGWMDTPGEDTIQrklhcspgENWKQKGEDSQPFGRLLKTEEVARCIAFCASAESGMMTGCVIDFD 263
                 79*********************988888999999***************************************************************************************998659*********99999999***************************************8666665112233335678889999*******************************9865 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   1.1e-36   3.2e-34       2     250 ..      18     264 ..      17     268 .. 0.93

  Alignments for each domain:
  == domain 1    score: 116.2 bits;  conditional E-value: 1.1e-36
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGak.vvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgw.GriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldg 250
                 kva+vtG++ G+g a  + +   G++ +vv++ +e++ +++akel++a+ +++ ++ad++  +++++l++ + ++fg+ldiLvn A       + +  +e++++i++vn  ++f +++ a +im ++g  G iin++s+ ++ + ++ +aY  +K +l   tK +A   A + i++na++ g+++tp  e  i  q ++ + s  +  k+   ++qp +r++++eeva +++f as ++  +tG  +  d 
  MMETSP1061-20121228|1867_1  18 KVAVVTGSTQGLGEATLRLFRDRGCRgLVVTGRNEQHGRRLAKELTSATCTAIFVRADLACIDDCRNLMKVTDEAFGTLDILVNAAATTDRGSLWDTTPEDYDRIMNVNTRAPFFLMQDAARIMEREGVeGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAWSRIRVNALAIGWMDTPG-EDTI--Q-RKLHCSPGENWKQKGEDSQPFGRLLKTEEVARCIAFCASAESGMMTGCVIDFDQ 264
                 99**********************9758999999******************************************************************************************9988549********************************************************6.4444..3.44555555556666789******************************9998875 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   3.8e-34   1.1e-31       2     242 ..      14     263 ..      13     269 .. 0.88

  Alignments for each domain:
  == domain 1    score: 108.0 bits;  conditional E-value: 3.8e-34
   TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGad.ivgvgisel..setqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealrad......ekrnaaileriPagrwGepedlagaavflassasdyvnGailavd 242
                 sl Gkva+vtG+ +GlG +    + + G+  +v +g++e+     ++++++   ++  ++adla +++ ++l++ + e++g +dilvn a    r    + + +d+d ++nvn +a f+l q +a+ + ++G +g iin++s  s+     +++y  sk a+   tk  a  +a + i+vna+a G+++t   ++++        e+ +++  +  P gr  ++e++a  + f as+ s  ++G ++  d
  MMETSP1061-20121228|1867_1  14 SLLGKVAVVTGSTQGLGEATLRLFRDRGCRgLVVTGRNEQhgRRLAKELTSATCTAIFVRADLACIDDCRNLMKVTDEAFGTLDILVNAAATTDRGSLWDTTPEDYDRIMNVNTRAPFFLMQDAARIMEREGVEGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAWSRIRVNALAIGWMDTPGEDTIQRKlhcspgENWKQKGEDSQPFGRLLKTEEVARCIAFCASAESGMMTGCVIDFD 263
                 789****************99999999996344444444411566788999999999*****************************************************************************************999999**************************************77666544311112155566778899*****************************99887 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.5   0.0   5.6e-30   1.6e-27       1     235 [.      18     261 ..      18     266 .. 0.91

  Alignments for each domain:
  == domain 1    score: 94.5 bits;  conditional E-value: 5.6e-30
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergf.GriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavr........edvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatls 235
                 +va+vtG+++G+G a  + + + G++ +  +  ne++ +++++e        ++v+ad++ ++++++ ++   ++ G++d+lvn+a  t    +   t e+++ ++++n  + f + ++    m   g  G iin+ss          a y  +k  l   tk  a   a + + vn++a G+++t+   +++        e+ ++k  ++ P +rl k ee+a+++af as e+g +tG  ++
  MMETSP1061-20121228|1867_1  18 KVAVVTGSTQGLGEATLRLFRDRGCRGLVVTGRNEQHGRRLAKELTSATCTAIFVRADLACIDDCRNLMKVTDEAFGTLDILVNAAATTDRGSLWDTTPEDYDRIMNVNTRAPFFLMQDAARIMEREGVeGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAWSRIRVNALAIGWMDTPGEDTIQrklhcspgENWKQKGEDSQPFGRLLKTEEVARCIAFCASAESGMMTGCVID 261
                 79************************9998888***********99999****************************************999999***************************998777559*******99887777789*************************************987777622222233556788999******************************8776 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.3   1.1e-28   3.2e-26       3     243 ..      17     261 ..      15     266 .. 0.92

  Alignments for each domain:
  == domain 1    score: 90.0 bits;  conditional E-value: 1.1e-28
   TIGR03206   3 dkvaivtgggggiggaicrrfaeegak.vavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgm.verkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkse..aekpeklieaftraiplgrlgkpddlagailflasddaafitgqvls 243
                 +kva+vtg + g+g a+ r f + g++ + v   n +  +++a++++++  +a  v++d++  +     +  ++ea+g  d+lvn a     +++ +t + +++r++ +n    +++    ++ m  e  +g i+n++s a+ +     a y + kg l   +k  a  la   i vn +  g  dt+  + ++ +  ++ +e  ++    + p+grl k +++a +i+f as +++++tg v+ 
  MMETSP1061-20121228|1867_1  17 GKVAVVTGSTQGLGEATLRLFRDRGCRgLVVTGRNEQHGRRLAKELTSATCTAIFVRADLACIDDCRNLMKVTDEAFGTLDILVNAAATTDRGSLWDTTPEDYDRIMNVNTRAPFFLMQDAARIMeREGVEGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAWSRIRVNALAIGWMDTPGEDTIQRKlhCSPGENWKQKGEDSQPFGRLLKTEEVARCIAFCASAESGMMTGCVID 261
                 79***********************9746677889999*************************************************************************99998777777666245569***********999999****************************************998887642267899999***********************************9985 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.2   1.5e-24   4.3e-22       3     262 ..      17     264 ..      15     267 .. 0.84

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 1.5e-24
   TIGR03971   3 GkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraf.lpalpvsglvepedvadvvawlasdesryitGaqlavda 262
                 Gkva++tG+++G G a  +rl ++         c+ l  vv  +   ++   + ak + ++   ++  +ad+  +++ r+ ++ + e fG ld++v+ a   + g++++ ++e++d +++vn +  +  ++ +   +  ++  Gsii vss+a+  ++p+la y  +k  l   tk  a  la   irvn++    +dt+  +    r+l     e  ++   +++p+  l+++e+va  +a+ as es ++tG  +  d+
  MMETSP1061-20121228|1867_1  17 GKVAVVTGSTQGLGEAT-LRLFRDRG-------CRGL--VV--TGRNEQHGRRLAKELTSATCTAIFVRADLACIDDCRNLMKVTDEAFGTLDILVNAAATTDRGSLWDTTPEDYDRIMNVNTRAPFFLMQDAARIMEREGVEGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAWSRIRVNALAIGWMDTPGED-TIQRKLHCSPGENWKQKgEDSQPFGRLLKTEEVARCIAFCASAESGMMTGCVIDFDQ 264
                 77777777777777664.55555432.......3333..22..122333334556667777778888899999999*********************************************************9999999999****************************999**************************877.666777665555444444999*****************************9998886 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.1   9.2e-22   2.7e-19       3     260 ..      19     264 ..      17     268 .. 0.85

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 9.2e-22
   TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngva......pGlsllpdampeevkeeyrrkvplgq...reasaeqiadvviflvskkakyitGtiikvdG 260
                 +a+vtG+++ +G++    + ++G r ++   r ++   +la+el ++ + +a+ v+adl+     ++ c ++++ +  afG  d+lvn a++     l     e+              ++  n+ ap++l++  a+ +     e  + + si+n+  +     ++  + y m+k al+  t+ aa  la  +irvn++a      pG   +  ++  +  e++++k    q   r   +e++a  ++f  s +++ +tG++i  d 
  MMETSP1061-20121228|1867_1  19 VAVVTGSTQGLGEATLRLFRDRGCRGLVVTGRNEQHGRRLAKELTSA-TCTAIFVRADLAC----IDDCRNLMKVTDEAFGTLDILVNAAATTDRGSLWDTTPED-----------YDRIMNVNTRAPFFLMQDAARIM-----EREGVEGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAWSRIRVNALAigwmdtPGEDTIQRKLHCSPGENWKQKGEDSQpfgRLLKTEEVARCIAFCASAESGMMTGCVIDFDQ 264
                 8**************9999*************************876.679********75....789********************99987766666554444...........44678899********9988777.....5667788999*999988888888999****************************98334444666667777888888*****97544422245689***********************9885 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.1     1e-21     3e-19     410     667 ..      13     263 ..       6     270 .. 0.84

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 1e-21
   TIGR02632 410 kelarrvalvtGgasGiGrevarrlvdeGah.vvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvd 667
                  +l ++va+vtG++ G+G+++ r + d+G   +v++  ++++ +  a+el+    + +a+ +++d++  +  ++ ++    a+G +di+vn a  +    l +t+ e++d+ ++++++  f++ ++aar++++ g+ g+++ ++s  +  + +   ay  +k a +   +  a  la   irvn++a      G    +ge +++r  +   + ++ ++  ++   ++r + +e++a  + + as ++   tG++i  d
  MMETSP1061-20121228|1867_1  13 SSLLGKVAVVTGSTQGLGEATLRLFRDRGCRgLVVTGRNEQHGRRLAKELT--SATCTAIFVRADLACIDDCRNLMKVTDEAFGTLDILVNAAATTDRGSLWDTTPEDYDRIMNVNTRAPFFLMQDAARIMEREGVEGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAWSRIRVNALAI-----GWMDTPGEDTIQRKLHC-SPGENWKQKGEDSQPFGRLLKTEEVARCIAFCASAESGMMTGCVIDFD 263
                 56889************************864899999************9..56678899***************************************************************************************************************************8763.....44444555555554433.345555555555666666666667777777777777777777776666 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.1   1.5e-15   4.5e-13       2     234 ..      21     262 ..      20     266 .. 0.89

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 1.5e-15
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdlk.........ealklvpmkrvgkaeevaalaaflmsddaayvtrqvisv 234
                 +vtg+++g+g a    +   g    v   +++ +    ++++++   +a +++ d+a    +r++++   ++ g+   +v +a  +   ++   + ed+d +++ n  + + +++     m r    g ii ++s +          y  +k  l  atk  a  la  +i vn +a g +dt   ++++++l+         +  +  p+ r+ k+eeva  +af  s +++ +t  vi  
  MMETSP1061-20121228|1867_1  21 VVTGSTQGLGEATLRLFRDRGCRGLVVTGRNEQHGRRLAKELTSATCTAIFVRADLACIDDCRNLMKVTDEAFGTLDILVNAAATTDRGSLWDTTPEDYDRIMNVNTRAPFFLMQDAARIMEREGVEGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAWSRIRVNALAIGWMDTPGEDTIQRKLHcspgenwkqKGEDSQPFGRLLKTEEVARCIAFCASAESGMMTGCVIDF 262
                 69**********988888889999999999999999**************************************99888888888777899999***********************9999999999********999888888999************************************87777777664222211111334578***************************999975 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0     5e-15   1.5e-12       3     255 ..      15     266 ..      13     271 .. 0.80

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 5e-15
   TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvavl.dksaag...l.eeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaa..lpalvasrgsviftvsnagfypngggalytaakhavvglvkelayela.pyvrvngvapgglstdlrglksldladksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavlnydggl 255
                 l ++v++vtg + glg a +  f   g r  v+  + ++    l +el +a     + v  d   +dd ++ ++   eafg ld+l++ a   d        p+d     +d ++++n ++ ++ ++ a  +       gs+i   s a + +    a y  +k a+    k+ ay la  ++rvn +a g + t   g ++++ + ++      ++  ++  p gr+ ++ee +    f a  +++  +tg+v+++d  +
  MMETSP1061-20121228|1867_1  15 LLGKVAVVTGSTQGLGEATLRLFRDRGCRGLVVtGRNEQHgrrLaKELTSATC-TAIFVRADLACIDDCRNLMKVTDEAFGTLDILVNAAATTDRGSLWDTTPED-----YDRIMNVNTRAPFFLMQDAarIMEREGVEGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAwSRIRVNALAIGWMDT--PGEDTIQRKLHCSPGENWKQKGEDSQPFGRLLKTEEVARCIAFCA-SAESGMMTGCVIDFDQSI 266
                 6689************************9766524555541113134444444.456799****************************99999987665555655.....9*********97666555401444456789999998999999999999********************9568*********9955..688888777676667777888899************998877666.5677889*******9765 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   8.5e-09   2.5e-06       2     209 ..      19     214 ..      18     262 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 8.5e-09
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkee.yerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqsqvreeas 209
                 +++vtG+ +G+G +  + +          lv+ +Rn++  +++ +e+++ +       v +dl  + d  +l+k+  e  +  + +  +    + G+l d++       D + + +    n+ +   l     + ++  +g+e  ++n+ss ++  +++ +a Y  sk a ++  +  a       ++v   a G +Dt  +  ++++ +
  MMETSP1061-20121228|1867_1  19 VAVVTGSTQGLGEATLRLFRD---RGCRGLVVTGRNEQHGRRLAKELTSATCT--AIFVRADLACIDDCRNLMKVTDEAFGTLDiLVNAAATTDRGSLWDTT-----PEDYDRIMN---VNTRAPFFLMQDAARIME-REGVEGSIINVSSTASYGSMPMLAAYGMSKGALNIATKNAAYSLAwSRIRVNALAIGWMDTPGEDTIQRKLH 214
                 789*********998777666...445569999**************974433..345679*************9988766544133444444444444443.....345666655...555555555556666555.78**********************************99998888889**************98888887654 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.4e-07     4e-05       5     118 ..      19     131 ..      16     171 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.4e-07
   TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghf 118
                  +++tg++ glg a+ + + ++g   +v++ r+ ++  + ak+l  ++ +   ++ dla +d  r++++   e+  +ld+lv  aa           ++++y+  +  n    f
  MMETSP1061-20121228|1867_1  19 VAVVTGSTQGLGEATLRLFRDRGCRGLVVTGRNEQHGRRLAKELTSATCTAIFVRADLACIDDCRNLMKVTDEAFGTLDILVN-AAATTDRGSLWDTTPEDYDRIMNVNTRAPF 131
                 579******************************************99999999****************************95.555555555566677777766666655555 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.6e-06   0.00046       2      91 ..      45     140 ..      44     153 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.6e-06
   TIGR01214   2 ilitGakgqlgreLveqlskegsevvaltrsqldledpealeellrei..kPdvvvntaAytd....VDkaEseaekayavNalatenlAraaarv 91 
                 +++tG + q gr+L+++l++  ++ + ++++ + ++d  +l+++ +e     d++vn+aA td     D++ ++ ++  +vN++a+  l + aar+
  MMETSP1061-20121228|1867_1  45 LVVTGRNEQHGRRLAKELTSATCTAIFVRADLACIDDCRNLMKVTDEAfgTLDILVNAAATTDrgslWDTTPEDYDRIMNVNTRAPFFLMQDAARI 140
                 689*****************99**9*9*999999**********999633569*********955555999***************9999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|1865_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-77  256.6   1.9    6.2e-77  256.2   1.3    1.2  1  TIGR00755 ksgA: dimethyladenosine transferase
    1.1e-06   26.8   0.3    4.3e-06   24.9   0.0    1.9  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    4.9e-06   24.2   0.1    1.1e-05   23.1   0.1    1.5  1  TIGR00537 hemK_rel_arch: putative methylase
    8.8e-06   23.0   0.0    2.1e-05   21.7   0.0    1.6  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00011   19.6   0.2    0.00026   18.4   0.0    1.6  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    0.00014   19.6   0.0    0.00034   18.3   0.0    1.6  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
    0.00015   19.2   0.0    0.00032   18.1   0.0    1.5  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0002   19.1   0.1    0.00099   16.8   0.0    1.8  2  TIGR02072 BioC: biotin biosynthesis protein BioC
    0.00034   17.9   0.0    0.00059   17.1   0.0    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0019   14.9   0.0     0.0039   13.9   0.0    1.5  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
     0.0041   14.0   0.1     0.0089   12.8   0.0    1.5  2  TIGR00476 selD: selenide, water dikinase
     0.0073   13.2   0.3      0.012   12.4   0.0    1.5  2  TIGR02143 trmA_only: tRNA (uracil-5-)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.2   1.3   1.8e-79   6.2e-77       2     254 ..      44     331 ..      43     333 .. 0.94

  Alignments for each domain:
  == domain 1    score: 256.2 bits;  conditional E-value: 1.8e-79
   TIGR00755   2 rpkkslGQnflidesvlqkiveaaeveesdvvlEiGpGlGaLTeellekakkvvaiEiDkrlaekLrkkle...leekleviegDalkldleefakkekvvsNlPYnissplvfkll.kkkklkeavlmvQkEvaerlvAkpgskeYgrlsvlvqllaevelvlkvppsaFyPkPkVeSavvrlekkeekplavkdeellekllkaaFsqrrKtlrnnlkkkllkkekleevleqekldek....................................kraeklsiedflklln 254
                 +p++s+GQ+fl+++ v++ iv+++ +++ dvvlEiGpG+G++T +ll+kak+v+a+E D+r++ ++ k+++   +e kl+vi+gDa++++++ f+   ++v+N+PY+iss +vfkll + + ++ avlmvQ+E+a rl A+p++  Y+rlsv++qlla+v+ ++kv++++F+P+PkVeS vvr+e k+    +  ++ +++ +++++F++++Ktlr+ l++k++ k   e++ + ++l+++                                    kra++l+++dfl+ll 
  MMETSP1061-20121228|1865_1  44 TPNTSIGQHFLKNPAVVTAIVQKSAIKPTDVVLEIGPGTGNMTVPLLQKAKTVIALEYDSRMVREVLKRVQnttVERKLKVIQGDAIQTKWPFFD---LCVANIPYQISSAIVFKLLaHRPMFRCAVLMVQEEFALRLSARPNEALYCRLSVNCQLLAKVDQLMKVGRNNFRPPPKVESRVVRIELKNP--PPPVNFVEWDGMVRLLFNRKNKTLRSVLNTKATLKLLEENRKTLQSLKKTqkqsdgatmmsddedkskesvkdilerivskpeykdKRARQLDLDDFLQLLS 331
                 6899**************************************************************9999989999****************777...*******************66999*****************************************************************96..5799*************************9666555556666666666666677899******************************************986 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.3e-08   4.3e-06       9      79 ..      61     130 ..      55     143 .. 0.87
   2 ?   -1.0   0.0       1.2   4.2e+02      48      70 ..     255     278 ..     242     306 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.3e-08
   TIGR02469   9 altLakLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrf.gvsnieivegdap 79 
                   +++k ++k++dv+l+iG GtG +t+ + + ++   v+a+e +   ++ + + +++  + ++ ++++gda 
  MMETSP1061-20121228|1865_1  61 TAIVQKSAIKPTDVVLEIGPGTGNMTVPLLQKAKT--VIALEYDSRMVREVLKRVQNTtVERKLKVIQGDAI 130
                 56778899**********************99998..89**********99999999967788999999976 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.2
   TIGR02469  48 aierneealelieeNlrrf.gvsn 70 
                 ++  +++ l+l+eeN + +  +++
  MMETSP1061-20121228|1865_1 255 SVLNTKATLKLLEENRKTLqSLKK 278
                 555678889999999998844443 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   3.1e-08   1.1e-05      17      92 ..      68     146 ..      56     151 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 3.1e-08
   TIGR00537  17 elkndd.vleiGaGtGlvairlkekgkkivatdinPfavkllkena..klnnveldvlesdlfenvegkfdvilfnpPy 92 
                  +k+ d vleiG GtG +++ l +k+k+++a + +   v+++ +       +++l+v+++d +++    fd+ + n Py
  MMETSP1061-20121228|1865_1  68 AIKPTDvVLEIGPGTGNMTVPLLQKAKTVIALEYDSRMVREVLKRVqnTTVERKLKVIQGDAIQTKWPFFDLCVANIPY 146
                 46777779**************************99999876543300344678**********9999**********9 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   6.2e-08   2.1e-05      20     100 ..      48     132 ..      42     146 .. 0.83
   2 ?   -2.9   0.0       2.2   7.6e+02     131     156 ..     255     280 ..     248     283 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 6.2e-08
   TIGR01934  20 SlGldrlWkkkavkkieee....keekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eeanvefieadaeeL 100
                 S+G++ l + ++v++i ++     ++ vl +  GtG++++ l +ka + v+++   ++m++ + k+++++  e++++ i++da + 
  MMETSP1061-20121228|1865_1  48 SIGQHFLKNPAVVTAIVQKsaikPTDVVLEIGPGTGNMTVPLLQKA-KTVIALEYDSRMVREVLKRVQNTtVERKLKVIQGDAIQT 132
                 6777777776666666665555488899****************99.78*********************9999********9764 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.2
   TIGR01934 131 RVlkpggrlvilefskpknallkkly 156
                  Vl+ +++l +le  +++ + lkk++
  MMETSP1061-20121228|1865_1 255 SVLNTKATLKLLEENRKTLQSLKKTQ 280
                 58899999999998888887777665 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   7.5e-07   0.00026      76     166 ..      59     146 ..      57     154 .. 0.85
   2 ?   -2.5   0.0       1.8     6e+02     124     151 ..     262     289 ..     246     322 .. 0.55

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 7.5e-07
   TIGR03534  76 LveaaleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdllealeekgkfdlivsNPPY 166
                 +v+a++++   k++  vl++g G+G +++ l+++    +via + +++ ++   k +++ ++++ ++++++d ++       fdl v+N PY
  MMETSP1061-20121228|1865_1  59 VVTAIVQKSAIKPTDVVLEIGPGTGNMTVPLLQKA--KTVIALEYDSRMVREVLKRVQNTTVERkLKVIQGDAIQTK--WPFFDLCVANIPY 146
                 5667777665555669****************995..5789999999999999999999999999********9655..777********** PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.8
   TIGR03534 124 AlkvarkNakrlglkeveflksdlleal 151
                 +lk+ ++N k+l+  + +  +sd  + +
  MMETSP1061-20121228|1865_1 262 TLKLLEENRKTLQSLKKTQKQSDGATMM 289
                 4555555555555444444444443333 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   9.9e-07   0.00034      54     163 ..      49     152 ..       8     161 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 9.9e-07
   TIGR00080  54 igygqtisaphmvakmlelLelkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLeld.nvivkegDGrkGfeekaPydailvtaaskeiPkaL 163
                 ig +  + +p +v+++++   +k+++ vLeiG G+G  ++    l+++  +v+++e    +v +  +r+++   +   +v++gD  +    k P+  + v+  + +i  a+
  MMETSP1061-20121228|1865_1  49 IG-QHFLKNPAVVTAIVQKSAIKPTDVVLEIGPGTGNMTVP---LLQKAKTVIALEYDSRMVREVLKRVQNTTVErKLKVIQGDAIQ---TKWPFFDLCVANIPYQISSAI 152
                 33.346789999************************99986...5677778******************996554268999999865...566776666666666666665 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   9.3e-07   0.00032     157     233 ..      69     144 ..      59     159 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 9.3e-07
   TIGR00406 157 dlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklenleqkiegkaDvivaNi 233
                  ++ ++v+++G G G +++ + ++ a+ v+a++ D+  v++ +k ++   v+ +l+v++ +  q+    +D  vaNi
  MMETSP1061-20121228|1865_1  69 IKPTDVVLEIGPGTGNMTVPL-LQKAKTVIALEYDSRMVREVLKRVQNTTVERKLKVIQGDAIQTKWPFFDLCVANI 144
                 566799************986.589***********************************999999999*******9 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.9e-06   0.00099      34     105 ..      71     144 ..      57     149 .. 0.77
   2 ?   -0.6   0.1      0.58     2e+02     120     195 ..     253     333 ..     246     340 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.9e-06
   TIGR02072  34 epakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls......nvqficgdieklplekksfDlivSnl 105
                  +  vL+iG GtG +t  ll++ +++  ial     m + + k+++      ++++i+gd+ + +   + fDl v+n 
  MMETSP1061-20121228|1865_1  71 PTDVVLEIGPGTGNMTVPLLQKAKTV--IALEYDSRMVREVLKRVQnttverKLKVIQGDAIQTK--WPFFDLCVANI 144
                 34689****************99999..777777777776666666678999999*****99998..45589999986 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.58
   TIGR02072 120 larvlkpgGllafstfgketlkElrqlfkqv...ea.hglrflsleelkallkkefellkleeeli.tlsFedvlevlrsl 195
                 l++vl++++ l +     +tl+ l+++ kq          + +s+e++k++l+  ++++++++++  +l+ +d l++l ++
  MMETSP1061-20121228|1865_1 253 LRSVLNTKATLKLLEENRKTLQSLKKTQKQSdgaTMmSDDEDKSKESVKDILERIVSKPEYKDKRArQLDLDDFLQLLSDF 333
                 666777777777777777788888887777776544455666777778888887777777777665235666666666655 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.7e-06   0.00059      48     124 ..      64     142 ..      26     150 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.7e-06
   TIGR02021  48 lpkdslkGk.kvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenveFevndlesle.gkfDavva 124
                 ++k ++k +  vl+ G GtG ++++l ++   v a +   ++v +  kr +++ +  +++   +d  +++   fD  va
  MMETSP1061-20121228|1865_1  64 VQKSAIKPTdVVLEIGPGTGNMTVPLLQKAKTVIALEYDSRMVREVLKRVQNTTVERKLKVIQGDAIQTKwPFFDLCVA 142
                 45555554415799****************************************9888999999988888778887775 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.1e-05    0.0039     280     332 ..      58     110 ..      45     132 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-05
   TIGR00479 280 klvdralealelqgeekvvDaycGvGtftlplAkqaksvvgvevvkesvekak 332
                  +v+ + +   +++ + v+++  G G++t+pl ++ak v+++e    +v +  
  MMETSP1061-20121228|1865_1  58 AVVTAIVQKSAIKPTDVVLEIGPGTGNMTVPLLQKAKTVIALEYDSRMVREVL 110
                 567778888899*******************************9999987654 PP

>> TIGR00476  selD: selenide, water dikinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.6e-05    0.0089     113     157 ..     100     144 ..      87     149 .. 0.91
   2 ?   -3.7   0.1       2.8   9.6e+02     284     310 ..     264     290 ..     251     317 .. 0.49

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.6e-05
   TIGR00476 113 klsievvrevikGfkdaareaktalvGGhtilnpepvlGlavtgv 157
                 + + ++vrev+k  +++  e k  ++ G +i+ ++p + l v+ +
  MMETSP1061-20121228|1865_1 100 EYDSRMVREVLKRVQNTTVERKLKVIQGDAIQTKWPFFDLCVANI 144
                 567899************************************987 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.8
   TIGR00476 284 lgaeeglesagslLlsalerekaallc 310
                 +++ee+ ++ +sl +++++   a++++
  MMETSP1061-20121228|1865_1 264 KLLEENRKTLQSLKKTQKQSDGATMMS 290
                 444444444443333333333333333 PP

>> TIGR02143  trmA_only: tRNA (uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.6e-05     0.012     168     244 ..      36     119 ..       9     131 .. 0.77
   2 ?   -3.1   0.1       1.9   6.6e+02      38      96 ..     260     321 ..     243     332 .. 0.56

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.6e-05
   TIGR02143 168 rqvensftqPnaavnekmleW...alevlees....kgdllelycGnGnfslalaekfekvlateiakssveaaqanieankid 244
                 +     ++ Pn+++ ++ l+    ++ ++++s    ++ +le+  G Gn++++l +k + v+a e     v   ++ +++ +++
  MMETSP1061-20121228|1865_1  36 KTASTNLITPNTSIGQHFLKNpavVTAIVQKSaikpTDVVLEIGPGTGNMTVPLLQKAKTVIALEYDSRMVREVLKRVQNTTVE 119
                 55667789999999999997522134455554222134589************************9999999998888877775 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.9
   TIGR02143  38 raefrlwhegdelyyamfdqetk...kkirvdefeiaselinelmpallaalkqdealrekl 96 
                 +a ++l  e+ +    + + +++     ++ d+ + ++e + +++++++++ + +++  ++l
  MMETSP1061-20121228|1865_1 260 KATLKLLEENRKTLQSLKKTQKQsdgATMMSDDEDKSKESVKDILERIVSKPEYKDKRARQL 321
                 55555655555555444433333333455556666666666666666666655555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1327.66
//
Query:       MMETSP1061-20121228|1866_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2196.68
//
Query:       MMETSP1061-20121228|1864_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1255.59
//
Query:       MMETSP1061-20121228|1869_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 625.88
//
Query:       MMETSP1061-20121228|1868_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.7    4.4  19.2      0.075   10.8   3.2    2.5  2  TIGR03086 TIGR03086: TIGR03086 family protein


Domain annotation for each model (and alignments):
>> TIGR03086  TIGR03086: TIGR03086 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.2   1.8e-05     0.075      13      88 ..      27      97 ..      20     113 .. 0.75
   2 ?    0.4   3.5     0.028   1.2e+02      46     105 ..     213     270 ..     188     279 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.8e-05
   TIGR03086 13 aaVradqlsrPTpCaewdVrdLleHlvgsaeafraakaagedgaaaaeaedevlgddpeaalaaaadaaraawadp 88
                +aV+adql +P p++e  V     Hl  ++ a + a++ +ed+a++++ e+e  ++++e++ a++ +++++a a+ 
  MMETSP1061-20121228|1868_1 27 HAVTADQLREPIPLPEHNV-----HLPDQTMAGGTADEDAEDEAEEESEEEEEEEEETEEEKAERQRRLEEARAAA 97
                79****************9.....7777776666666667777777778888888888888888887777776552 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.028
   TIGR03086  46 r.aakaagedgaaaaeaedevlgddpeaalaaaadaaraawadpaaleatvslpggevpar 105
                 + aa+aa+++++a++  ++++++ d + +++ +a+aa+aa    a+++a v+++ g +p +
  MMETSP1061-20121228|1868_1 213 KaAAVAASSESKAGKGKKKKQSKKDRALQYDGSAQAAAAAA---AGTDAIVAAGPGPAPTT 270
                 22567777788888888888888888888988888877764...45778787777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       432  (0.105314); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.51
# Mc/sec: 760.88
//
Query:       MMETSP1061-20121228|1872_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 1132.91
//
Query:       MMETSP1061-20121228|1870_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.52
# Mc/sec: 1852.92
//
Query:       MMETSP1061-20121228|1873_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 993.80
//
Query:       MMETSP1061-20121228|1871_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-50  166.7   0.5    9.8e-50  166.7   0.3    3.1  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    1.9e-09   34.9   0.9    1.9e-09   34.9   0.6    2.4  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    3.7e-06   24.6   0.1    8.6e-06   23.5   0.1    1.6  1  TIGR00231 small_GTP: small GTP-binding protein domain
    7.4e-06   22.9   7.3    1.1e-05   22.3   0.0    2.9  3  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
      8e-06   23.0   0.3    4.7e-05   20.5   0.0    2.2  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    0.00012   19.3   0.0    0.00012   19.3   0.0    3.0  4  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    0.00038   17.9   0.0     0.0011   16.4   0.0    1.7  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
     0.0016   15.7   0.9     0.0016   15.7   0.6    2.9  3  TIGR00436 era: GTP-binding protein Era
     0.0071   13.3   0.0     0.0071   13.3   0.0    2.3  3  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
  ------ inclusion threshold ------
       0.46    6.5  11.0       0.65    6.0   7.6    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        1.2    5.5   9.2       0.28    7.6   0.2    2.8  2  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   1.7       4.2   1.6e+03     147     163 ..     144     160 ..     119     189 .. 0.49
   2 !  166.7   0.3   2.6e-52   9.8e-50       3     185 ..     417     634 ..     415     635 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.2
   TIGR03598 147 lkkalkkvkkelkkeee 163
                  +++ ++ +++ +++++
  MMETSP1061-20121228|1871_1 144 SNSNHNNSNSNSNNQQR 160
                 22222222222222222 PP

  == domain 2    score: 166.7 bits;  conditional E-value: 2.6e-52
   TIGR03598   3 flksaaklkqlpedklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffev.....................neelrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkea...kipvlvvltKaDklkkselkkalkkvkkelkke...........eekvevllfSslkkegieelkael 185
                 f+++a+++  lp+ +  e +f+GrSNvGKSsl+N++tnrk+la tSktPG+Tq+ nff v                     +++++lvDlPG+G+akvs+e+ke+w++++ eYL++r+nLk v+ l+D+rh++ ++D ++++ + e+   ++ ++vvltKaDk  k++ +k+ k+ k +++ +             k+ vll S+++k g +++++ l
  MMETSP1061-20121228|1871_1 417 FVTGAVDMAGLPPPDRGEAVFIGRSNVGKSSLVNMITNRKSLAYTSKTPGKTQEFNFFAVndkpgrekeirygdtvegqkdDDSFYLVDLPGFGFAKVSDEKKEQWASFMGEYLQNRKNLKVVFHLIDSRHGPIDEDSNIMKQVGENlpsNVAYVVVLTKADKNVKGSSSKNRKAGKVSMDVMsklrdvmrenkVGKAPVLLSSAETKLGRDDIWRYL 634
                 99*************************************************************************999886679*********************************************************9998866669************9887777665544433332200000011002233456777777888888877765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   1.2       5.8   2.2e+03     317     348 ..     161     193 ..     124     199 .. 0.43
   2 !   34.9   0.6   5.1e-12   1.9e-09     180     341 ..     437     633 ..     432     640 .. 0.64

  Alignments for each domain:
  == domain 1    score: -4.9 bits;  conditional E-value: 5.8
   TIGR03594 317 kflkfapivfiSAltg.kgveklleaikevyes 348
                 ++    +   +S lt+ +  +++++aik+++++
  MMETSP1061-20121228|1871_1 161 QKNYKLHSTAVSQLTHsSTADDVIKAIKRAQKN 193
                 222222333334333202334455555554444 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 5.1e-12
   TIGR03594 180 iiGrpNvGKStLvNallgeerv.ivsdiaGtTrDsidievevk..................gkkylliDTAGirrkkkveekveklsvl..rtlkaieradvvllvlDategiseqDlkiaglilee...gkalvivvNKwDlv...kdekele..elkkeleekl......kflkfapivfiSAltgkgvekllea 341
                 +iGr NvGKS+LvN +++++ +  +s+++G T++     v+ k                  ++++ l+D  G    k  +ek e+ +    + l+  ++ +vv+ ++D+++g  + D +i++++ e+   + a v+v+ K D+    +++k+++  +++ ++ +kl      +++  ap++  SA+t+ g +++++ 
  MMETSP1061-20121228|1871_1 437 FIGRSNVGKSSLVNMITNRKSLaYTSKTPGKTQEFNFFAVNDKpgrekeirygdtvegqkdDDSFYLVDLPGFGFAKVSDEKKEQWASFmgEYLQNRKNLKVVFHLIDSRHGPIDEDSNIMKQVGENlpsNVAYVVVLTKADKNvkgSSSKNRKagKVSMDVMSKLrdvmreNKVGKAPVLLSSAETKLGRDDIWRY 633
                 69999999999999999987652689999999986444333332222233333333333335559999999998888888888887654116688889999999999999999999999999998753337899999999998764423333331122222223331111113455667777777777766666665 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1   2.3e-08   8.6e-06       7     127 ..     436     585 ..     432     634 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 2.3e-08
   TIGR00231   7 vivGhvdvGKstLlnsllknk.isiteskpgvtrdyvteqieedGkt..................ykvnllDTaG......qedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakk...kgvpiilvvnKiDlkd...d 127
                 v++G+++vGKs+L n ++ +k  + t+ +pg t++++   + ++ k+                    + l+D++G       +++++ +   + e  +  + + +v++++d + g+ +++  i +++ +   ++v  ++v++K D++    +
  MMETSP1061-20121228|1871_1 436 VFIGRSNVGKSSLVNMITNRKsLAYTSKTPGKTQEFNF--FAVNDKPgrekeirygdtvegqkddDSFYLVDLPGfgfakvSDEKKEQWASFMGEYLQNRKNLKVVFHLIDSRHGPIDEDSNIMKQVGEnlpSNVAYVVVLTKADKNVkgsS 585
                 89****************98824678888999999999..55555556699**************9************9998888899999999*************************999998875322278999*********984431 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   1.6      0.55   2.1e+02     122     176 ..     146     201 ..     116     212 .. 0.51
   2 !   22.3   0.0   2.9e-08   1.1e-05       7      43 ..     432     469 ..     428     473 .. 0.86
   3 ?    2.8   0.1     0.024         9      88     140 ..     537     592 ..     528     616 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.55
   TIGR03918 122 lnkidlkeeekekeklekkkeeevvlvsakekeg.ieelkealiellpeea.eektl 176
                  n+   +++++++++++k+ + +  +vs+ ++++  +++ +a+ ++ +++  ++ ++
  MMETSP1061-20121228|1871_1 146 SNHN-NSNSNSNNQQRQKNYKLHSTAVSQLTHSStADDVIKAIKRAQKNHDhHDLRV 201
                 2333.3333334556666666666666666554426677777777665543344444 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 2.9e-08
   TIGR03918   7 rlhialfGrrNaGKSsliNaltg.qdvaivsdvpGtTt 43 
                 r + +++Gr N+GKSsl+N++t+ +++a +s++pG T 
  MMETSP1061-20121228|1871_1 432 RGEAVFIGRSNVGKSSLVNMITNrKSLAYTSKTPGKTQ 469
                 556789****************83579********995 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.024
   TIGR03918  88 dlallvvdaeaeleeleeelleelkek...kipvivvlnkidlkeeekekeklekk 140
                  ++  ++d+++++ + ++++++++ e+   ++ ++vvl+k+d++ + ++++++++ 
  MMETSP1061-20121228|1871_1 537 KVVFHLIDSRHGPIDEDSNIMKQVGENlpsNVAYVVVLTKADKNVKGSSSKNRKAG 592
                 566778999999999999999999874444999*********98887554444333 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.3e-07   4.7e-05     157     199 ..     434     472 ..     430     484 .. 0.80
   2 ?   -0.5   0.1      0.31   1.2e+02     112     155 ..     597     640 ..     514     641 .] 0.79

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.3e-07
   TIGR03597 157 dvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldli 199
                 +++++G +NVGKSsl+N + +     k++  tSk pg T +++
  MMETSP1061-20121228|1871_1 434 EAVFIGRSNVGKSSLVNMITNR----KSLAYTSKTPGKTQEFN 472
                 789**************98844....44667899999887766 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.31
   TIGR03597 112 kikewlkkeakeeglkpvdillvsakkkkglkellelikkarek 155
                  + + l++ ++e+ + ++ +ll sa++k g +++ +++ +a+e+
  MMETSP1061-20121228|1871_1 597 DVMSKLRDVMRENKVGKAPVLLSSAETKLGRDDIWRYLRRAAEG 640
                 46778888999999999999******999999999999988775 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.4       1.1   4.1e+02      71      73 ..     162     164 ..     108     210 .. 0.53
   2 !   19.3   0.0   3.3e-07   0.00012     120     163 ..     434     478 ..     425     481 .. 0.84
   3 ?   -1.5   0.0      0.76   2.8e+02     162     182 ..     498     518 ..     493     528 .. 0.87
   4 ?   -1.2   0.0      0.62   2.3e+02      18      60 ..     532     579 ..     522     591 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.1
   TIGR03596  71 kyf 73 
                 k++
  MMETSP1061-20121228|1871_1 162 KNY 164
                 222 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 3.3e-07
   TIGR03596 120 ralvvGiPNvGKStliNrlakkkv.akvgnkpgvTksqqwiklsk 163
                 +a+ +G  NvGKS+l+N ++++k+ a + ++pg T++ + + +++
  MMETSP1061-20121228|1871_1 434 EAVFIGRSNVGKSSLVNMITNRKSlAYTSKTPGKTQEFNFFAVND 478
                 5788999*************99872579999****9988877765 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.76
   TIGR03596 162 skeleLlDtPGilwpkledee 182
                 ++++ L+D PG  + k++de+
  MMETSP1061-20121228|1871_1 498 DDSFYLVDLPGFGFAKVSDEK 518
                 57899**********999987 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.62
   TIGR03596  18 klklvDvvievlDARiplssknpeleelvk.....nkprlivlnkaDl 60 
                 + k+  vv+ ++D+R     +++++ + v+     n   ++vl+kaD 
  MMETSP1061-20121228|1871_1 532 NRKNLKVVFHLIDSRHGPIDEDSNIMKQVGenlpsNVAYVVVLTKADK 579
                 668889999999999866666666665554333335667888888885 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.8e-06    0.0011     125     147 ..     435     457 ..     431     469 .. 0.85
   2 ?   -4.1   0.0       5.2     2e+03     177     197 ..     503     523 ..     500     529 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.8e-06
   TIGR00157 125 svfaGqSGVGKSSLiNlldpevk 147
                 +vf+G+S VGKSSL+N+++ + +
  MMETSP1061-20121228|1871_1 435 AVFIGRSNVGKSSLVNMITNRKS 457
                 89****************98765 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 5.2
   TIGR00157 177 iiDtPGfneldlenleeeqla 197
                 ++D PGf   ++ ++++eq a
  MMETSP1061-20121228|1871_1 503 LVDLPGFGFAKVSDEKKEQWA 523
                 789999999998888877755 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.9   7.1e+02     139     170 ..      22      53 ..      13      76 .. 0.77
   2 ?   -3.7   0.7       3.6   1.3e+03     121     138 ..     147     164 ..     117     200 .. 0.46
   3 !   15.7   0.6   4.3e-06    0.0016       5     104 ..     437     561 ..     433     610 .. 0.56

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.9
   TIGR00436 139 keiveisalkgenveelkaiveaklregpfyy 170
                 +  ++i al+ ++ e ++ i   + + +p++ 
  MMETSP1061-20121228|1871_1  22 ALLLHIHALTNKHAEAWSIISGSNTQTNPYRS 53 
                 55788999999999999999999999999886 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3.6
   TIGR00436 121 ekdkllelidkeasllef 138
                 +++++ ++ ++++ + ++
  MMETSP1061-20121228|1871_1 147 NHNNSNSNSNNQQRQKNY 164
                 222222222222222222 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 4.3e-06
   TIGR00436   5 ilGrpnvGKSTLlNkllgqkis.ivSpkaqTTrn..............ris.giltegasq...iifiDtPGl.....hekkhklnellvkeirkalsevdlilfvvdsdeknke.dellleklq 104
                  +Gr+nvGKS L+N +++ k++  +S+ +  T++              +i+ g ++eg++      ++D PG+     + +k++     + e  +  +++ ++  ++ds +   + d  +++++ 
  MMETSP1061-20121228|1871_1 437 FIGRSNVGKSSLVNMITNRKSLaYTSKTPGKTQEfnffavndkpgrekEIRyGDTVEGQKDddsFYLVDLPGFgfakvSDEKKEQWASFMGEYLQNRKNLKVVFHLIDSRHGPIDeDSNIMKQVG 561
                 69****************99862678777666532111111111111122224455544433334456777663333223455555555555556666777777777777766665655555554 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.9       3.7   1.4e+03     328     380 ..     136     186 ..     110     206 .. 0.57
   2 !   13.3   0.0   1.9e-05    0.0071     213     245 ..     436     469 ..     430     472 .. 0.82
   3 ?   -1.8   0.2      0.72   2.7e+02     287     330 ..     534     582 ..     530     606 .. 0.63

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 3.7
   TIGR00450 328 Laeleilkselkltvsllsakqlkikelvdlltekinalyskekdeldlalis 380
                  ++ ++ +s+   + s+ + ++++ ++  +l +  +++l ++ +   d+++  
  MMETSP1061-20121228|1871_1 136 NKKANSSNSNSNHNNSNSNSNNQQRQKNYKLHSTAVSQLTHSST--ADDVIKA 186
                 34444455555555556666666666666666666666666533..2333322 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.9e-05
   TIGR00450 213 aivGktNvGKSSLlNallk.kdraiVsdikGttR 245
                 + +G+ NvGKSSL+N++ + k  a  s+ +G t 
  MMETSP1061-20121228|1871_1 436 VFIGRSNVGKSSLVNMITNrKSLAYTSKTPGKTQ 469
                 679************9876155688999999986 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.72
   TIGR00450 287 keadlvlyvlDaskpltkdd.eliitlkk...kkkdlllvlNKiDLa.e 330
                 k+ ++v  ++D +++  ++d ++++++     ++   ++vl K+D   +
  MMETSP1061-20121228|1871_1 534 KNLKVVFHLIDSRHGPIDEDsNIMKQVGEnlpSNVAYVVVLTKADKNvK 582
                 677899999**99876555536666554311256778999999997642 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   7.6    0.0017      0.65     215     381 ..      74     176 ..      25     243 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0017
   TIGR00934 215 sdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkk 381
                 ++++ de+ +    +++++ ++s++++s+ ++    +++ + + l rs+ +++e+++  +k+r+k  ++ ++++++++++s+s                                                       ++ +r+k        n+k +++  +++++
  MMETSP1061-20121228|1871_1  74 AQIKDDEERR-ASAETASSSSSSSSSSSSMMMTTMPPSESNTKRLPRSERKALERQKKANKTRNKKANSSNSNSNHNNSNSNS-------------------------------------------------------NNQQRQK--------NYKLHSTAVSQLTH 176
                 2222222222.222222222233333333333344444444444444444444444444444444111111111222222222.......................................................1111111........11111111111111 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   2.6      0.14        54     194     242 ..     119     166 ..      56     217 .. 0.48
   2 ?    7.6   0.2   0.00076      0.28       1      30 [.     439     470 ..     439     547 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.14
   TIGR00437 194 evleglleeraleiekiekelaevvkkesesklsateiadeekvlveks 242
                 + +++   er+++++k +++ a++ +++s+++ s  +  ++++++  k 
  MMETSP1061-20121228|1871_1 119 RSERKA-LERQKKANKTRNKKANSSNSNSNHNNSNSNSNNQQRQKNYKL 166
                 222222.222222233323333333333333333333332222222111 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00076
   TIGR00437   1 GnpNvGKstlfnaLtgsn..qkvgNwpGvTVe 30 
                 G  NvGKs+l+n +t+ +  ++ +  pG+T e
  MMETSP1061-20121228|1871_1 439 GRSNVGKSSLVNMITNRKslAYTSKTPGKTQE 470
                 889************97633577888888855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       419  (0.102145); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.63
# Mc/sec: 1342.94
//
Query:       MMETSP1061-20121228|1874_1  [L=1043]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-90  300.7   3.6    9.8e-80  266.6   1.1    2.5  2  TIGR00657 asp_kinases: aspartate kinase
    6.3e-80  267.0   3.9    5.6e-71  237.5   1.1    2.3  2  TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class
    1.7e-20   71.5   0.1      1e-19   68.9   0.0    2.2  2  TIGR02078 AspKin_pair: putative Pyrococcus aspartate kinase subunit
    2.4e-05   21.9   0.0    4.9e-05   20.9   0.0    1.4  1  TIGR02076 pyrH_arch: putative uridylate kinase
    0.00045   17.7   0.0    0.00094   16.7   0.0    1.5  1  TIGR02075 pyrH_bact: UMP kinase


Domain annotation for each model (and alignments):
>> TIGR00657  asp_kinases: aspartate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   6.3e-12   5.2e-09       4     131 ..      51     233 ..      48     262 .. 0.76
   2 !  266.6   1.1   1.2e-82   9.8e-80     156     440 ..     293     588 ..     279     590 .. 0.93

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 6.3e-12
   TIGR00657   4 iVqKFGGtSvgnverikkvakivkkek.............ekgnqvvVVvSAmag...vTdaLvelaekvsseee...keliekirekhlealeela.sqalkeklkallekeleevkk....................................ereldlilsvGEklSaallaaaleelgvk 131
                  V KFGGtSv+n++  + +a+iv+ +                g+  +VVvSAm+g   +Td L+e ++ + ++++    +l++++ +kh + le l    +++  +++  ++e +                                        er  +l+  +GE  Sa++l+ +l+++ v+
  MMETSP1061-20121228|1874_1  51 QVHKFGGTSVANADCYRSAARIVEDQLgivdvdesngaqpDDGQRLAVVVSAMGGkpkTTDLLLESVQAAARRDQaevDRLLDTVLTKHSKCLEDLFgGGSSS-SSSSGDDQEDDDDDDededdqdckellcvvrndihdikdilktvalmkwqaERISELVSGYGELWSARILSRLLHNRSVE 233
                 599*******************987542222222222212467889*******854448**********9999987877789999999999999887533222.2222222222222223457889999*************************9999999999**************999864 PP

  == domain 2    score: 266.6 bits;  conditional E-value: 1.2e-82
   TIGR00657 156 eikterleklleegiivvvaGFiGatekgeittLGRGGSDltAallAaalkAdeveiytDVdGiytaDPrivpeArrldeisyeEalELaslGakvLhprtlepamr..akipivvkstfnpeaeGTlivaksk..seeepavkalsldknqalvsvsgttmk..pgilaevfgalaeakvnvdlilqsssetsisfvvdkedadkakellk...kkvkeekaleevevekklalvslvGagmksapgvaakifeaLaeeniniemis..sseikisvvvdekdaekavealhekl 440
                 + ++++ ++  +  +  v++G+++++ +g  ttL R GSD++Aa+++ +l+ + + i+tDVdG+++aDPr vp A  + e+sy+Ea+ELa++Gakv+hp+t++pa+    +ipi++++tfn +  GT i  +s+   ++++ v + s+ +++al++v+g++    +g++ ++fg+l++ ++nv+li+q sse+si+f+ ++eda ka e+ +   +k++e++ ++++ev+   ++v+ vG+gmk+  gva+++f+aL +++ini +i+  +se++isvvv  ++a++a++alh+++
  MMETSP1061-20121228|1874_1 293 NKNKNNSNSNSQTRVHFVITGYVASNTEGVATTLQRDGSDYSAAIMGRLLRSTNITIWTDVDGVLSADPRRVPGAYAVSEVSYNEAMELAYFGAKVIHPKTMQPAISsnPQIPIFIRNTFNAKFRGTRIFTSSVteTQSDSCVCGFSSIEHMALINVEGSGLIgvQGVARRLFGTLESLGINVVLISQASSEHSITFATPEEDATKAREAIEeefQKELEKNRISNIEVNVPCSIVAAVGDGMKHVAGVAGRFFSALGDAQINILAIAqgCSERNISVVVATSQATRALRALHAAF 588
                 33444444444555889****************************************************************************************986678*******************99988877889*********************999******************************************99999899899999*************************************************************************98 PP

>> TIGR00656  asp_kin_monofn: aspartate kinase, monofunctional class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.1e-10   9.4e-08       5      97 ..      52     233 ..      49     263 .. 0.73
   2 !  237.5   1.1   6.8e-74   5.6e-71     138     406 ..     309     590 ..     296     591 .. 0.94

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.1e-10
   TIGR00656   5 VqKFGGtsvgsserikkaakivlkel.............kegkkvvVVvSAms...kvtdelvelae.................llklleaisdei..................................................................sprerdelvsvGEllssallssalrelgvk 97 
                 V KFGGtsv++ +  + aa+iv ++l              +g++  VVvSAm+   k+td l+e+++                 l                                                                             ++r  +++  +GEl s+++ls +l+++ v+
  MMETSP1061-20121228|1874_1  52 VHKFGGTSVANADCYRSAARIVEDQLgivdvdesngaqpDDGQRLAVVVSAMGgkpKTTDLLLESVQaaarrdqaevdrlldtvL----------TkhskcledlfgggsssssssgddqeddddddededdqdckellcvvrndihdikdilktvalmkwqAERISELVSGYGELWSARILSRLLHNRSVE 233
                 89*******************9775422333322222224577889******933357********9666666666555444440..........04444455555666666666677777777777777888888888888888899999999999999988888888888**************998876 PP

  == domain 2    score: 237.5 bits;  conditional E-value: 6.8e-74
   TIGR00656 138 vvvaGFiGateeGeiTtLGRGGSDltAallaaalkAdrveiyTDVeGvyttDPrvveeakkidkisyeEalelAtlGakvlhpralela..veakvpilvrsskeke.egTlitn....kkensslvkaialeknvarltvegegmlgkrgilaeifkaLaeeeinvdlisqtesetsislvvdeedvdeakkaLkeesgaae....lesleveedlavvsivgaglveapGvaseifkaleekninilmis..ssetkisvlvdekdaekavrklheklee 406
                  v++G++ +++eG  TtL R GSD++Aa+++  l   ++ i+TDV+Gv+++DPr v+ a  + ++sy+Ea+elA++Gakv+hp+++++a   + ++pi++r++++ + +gT+i      +++ +s v + +  + +a+++veg g++g +g++ ++f++L   +inv+lisq++se si++   eed+++a +a++ee+++      ++++ev+  + +v++vg g++++ Gva++ f+al + +inil i+   se +isv+v + +a++a r+lh+++ +
  MMETSP1061-20121228|1874_1 309 FVITGYVASNTEGVATTLQRDGSDYSAAIMGRLLRSTNITIWTDVDGVLSADPRRVPGAYAVSEVSYNEAMELAYFGAKVIHPKTMQPAisSNPQIPIFIRNTFNAKfRGTRIFTssvtETQSDSCVCGFSSIEHMALINVEGSGLIGVQGVARRLFGTLESLGINVVLISQASSEHSITFATPEEDATKAREAIEEEFQKELeknrISNIEVNVPCSIVAAVGDGMKHVAGVAGRFFSALGDAQINILAIAqgCSERNISVVVATSQATRALRALHAAFRL 590
                 59***************************************************************************************444569******************995554334449**********************************************************************998754325899*******************************************99667***********************9986 PP

>> TIGR02078  AspKin_pair: putative Pyrococcus aspartate kinase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.25   2.1e+02       5      23 ..      54      74 ..      51     136 .. 0.51
   2 !   68.9   0.0   1.2e-22     1e-19     161     269 ..     310     422 ..     288     452 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.25
   TIGR02078  5 kfGGssvryd..feeavelvk 23
                kfGG+sv ++  +++a  +v+
  MMETSP1061-20121228|1874_1 54 KFGGTSVANAdcYRSAARIVE 74
                677777665433444444332 PP

  == domain 2    score: 68.9 bits;  conditional E-value: 1.2e-22
   TIGR02078 161 vipGfvg.nlnGyrvtlGrGGsdysavalavllnsklvlimsdveGiftadPklvPsarlipylsyeeiliaaklGmkalqwkavelvk..ekkilvlfGktkdwkl.Gtlvs 269
                 vi+G+v+ n +G   tl r Gsdysa  +++ll s  + i +dv+G+ +adP+ vP a  +  +sy+e++  a +G k ++ k+++++   + +i++++  t + k+ Gt + 
  MMETSP1061-20121228|1874_1 310 VITGYVAsNTEGVATTLQRDGSDYSAAIMGRLLRSTNITIWTDVDGVLSADPRRVPGAYAVSEVSYNEAMELAYFGAKVIHPKTMQPAIssNPQIPIFIRNTFNAKFrGTRIF 422
                 9****97589****************************************************************************98611568****999999998666554 PP

>> TIGR02076  pyrH_arch: putative uridylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0     6e-08   4.9e-05     118     169 ..     331     382 ..     301     389 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 6e-08
   TIGR02076 118 TdavaallaEaleadllinitnvdgvYdkDPkkykdakkfkklkaeelveiv 169
                  d+ aa++   l++ ++++ t+vdgv ++DP++ + a ++++++++e++e++
  MMETSP1061-20121228|1874_1 331 SDYSAAIMGRLLRSTNITIWTDVDGVLSADPRRVPGAYAVSEVSYNEAMELA 382
                 5899*******************************************99986 PP

>> TIGR02075  pyrH_bact: UMP kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.2e-06   0.00094     137     187 ..     331     380 ..     304     414 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.2e-06
   TIGR02075 137 tDtaaalraieieadvilkgkkgvdGvysaDPkknkdakkyekltydevlk 187
                  D++aa+ +  +++  i + ++ vdGv saDP++ + a   ++++y+e+++
  MMETSP1061-20121228|1874_1 331 SDYSAAIMGRLLRSTNITIWTD-VDGVLSADPRRVPGAYAVSEVSYNEAME 380
                 5888899999999999999999.*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1043 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.52u 0.19s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 3277.73
//
Query:       MMETSP1061-20121228|1879_1  [L=1298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   17.4  35.2    0.00015   17.4  24.4    5.2  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -16.5  14.2         1   4.1e+03     664     859 ..     335     370 ..     228     403 .. 0.30
   2 !   17.4  24.4   3.7e-08   0.00015     686     879 ..     607     799 ..     603     811 .. 0.80
   3 !    5.6  13.9   0.00013      0.55     259     435 ..     820     986 ..     814    1007 .. 0.38
   4 ?   -8.4  21.7         1   4.1e+03     248     479 ..    1044    1278 ..    1027    1289 .. 0.67

  Alignments for each domain:
  == domain 1    score: -16.5 bits;  conditional E-value: 1
   TIGR02168 664 tggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesl 859
                 + gs+                                                                                                                                                                +s++++ +a +  +++l+++ + +++ i++ 
  MMETSP1061-20121228|1879_1 335 ANGSK----------------------------------------------------------------------------------------------------------------------------------------------------------------HSVNSNSSANASGMDRLAKEQKVMKQAIAER 370
                 11111................................................................................................................................................................1111111111111222222222222222211 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 3.7e-08
   TIGR02168 686 eeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerlesle....keiaalekeleeleeqieeleeeiesleaeieeleeeleeleeelee 879
                 +++e l++k++el+++  + ek  ++ +e l++  + +++l++++++l+++++ le+ ++ ++e++++le  ++e++ e+e+++e   +a ++lke+e+eieel++ +e+ ++e+++lr+++  +e+ +++ + +++++ +r+++ e    ++ +++e e e+ ++q+e    ++e+ ++++   ee +e+le+el+ 
  MMETSP1061-20121228|1879_1 607 SRFEHLAAKLDELKTKEIASEK--KDDNEILTQYATISKQLSDEHERLQQDFKHLERDEQLVAEERKELEGSINEQTGEIETEKE---NACAKLKEVEQEIEELRKALENKQKEAASLRTKMFGFEDSISKVRVKFSRQLNRVNNKEmtvkQNRREWEIENEQYTKQKEAHDLQVENHSNALLAHEELMETLESELKL 799
                 5667778888887765555444..5555567888888888888999999999999999999999999999999998888887766...778899*********************************99999999999888888765111156667777888888888888889999999999999999999998875 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.00013
   TIGR02168 259 eaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaelee.aeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaea 435
                 e++ +e e +l++l++++ + e ++++++kel+ ++ +i++le+e  +l ++   lek+++++ +   ++ ++       + + ++e+++++ +++++e+el+  a+a+++ +e++l+el+ +l e++ ++a+++e+l+  ++++ +l +++e+le+++++   e +++ + ++ + a
  MMETSP1061-20121228|1879_1 820 EENDSEDEGSLAQLKANVVKCEGAVDAAKKELKMATMAIQNLETERDVLMAKIPVLEKQKKAAAAG--RDFKS-------AGKYSKEIKDAASRIKECEDELNDdAKAKKATAEAQLRELDSDLLEAN-KIADAKEKLS-GEKRMVTLAKKIEELEKEKTERCGEDSSEGNTVKSVAA 986
                 333333344444444444444444444444444444444444444444444444333333333311..11111.......222222222222222222222221012233344555555555554432.3444443333.33444455555555555554444444444444442222 PP

  == domain 4    score: -8.4 bits;  conditional E-value: 1
   TIGR02168  248 lkeaeeeleeleaelkel.eeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaele..eaeaeleelesrleelee.eleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqal 479 
                  ++e++e+l++++a ++++ + e +  +++++e+ +++ e q+el+++++ei++++ + e+ +   ++  +  +   ++ ee+  + ee+ +++++l ++++el+e+++++++e +  +ae+ + el + ++el+e ++ +  +++    e+   l++e e++++++++++ ++ + ++  ee++++  +a   ++++q++  e+ ee ++++  +++ e ++e  +e++ e +q+ 
  MMETSP1061-20121228|1879_1 1044 AEEMRERLAKAKALIAKCaDLEEKVYEAADREDFDAAGEFQEELDRVNNEIEEMNITDEECELLAQEEATLDAVPPTEAEESGVTTEEQTAKAKQLITKQSELEEKVQDAAEEEDfeAAEEFQTELDRVISELQEfNIPDDLKALLTKDEDDVPLASEDEQVKETISDADGEE-KKENPDEEQDQDSVDAPVVAENVQSTEPEVPEEATDATPPESSEEVEVEVESEAIVEEQQET 1278
                  45555666666655555413334445677888889999999999999999999986666655554433344444456778888899999999999999999999999877665541044444555555555555434445555666666666678899999999999999985.45555555556666688888888888888888888887777666666666666766666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       557  (0.135787); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.95u 0.17s 00:00:01.11 Elapsed: 00:00:01.04
# Mc/sec: 1647.33
//
Query:       MMETSP1061-20121228|1882_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 2164.62
//
Query:       MMETSP1061-20121228|1894_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|1898_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-13   48.1   0.0    2.3e-13   48.1   0.0    2.1  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.6e-10   37.2   0.0    2.6e-10   37.2   0.0    2.0  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
       0.02   11.2   9.4      0.027   10.7   6.5    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
      0.052   11.3   5.6      0.086   10.6   3.9    1.4  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
       0.08   10.0   8.3       0.11    9.6   5.7    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
       0.19    7.8   5.3       0.21    7.7   3.7    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
       0.87    6.6  14.3        1.3    6.0   9.9    1.2  1  TIGR03779 Bac_Flav_CT_M: Bacteroides conjugative transposon TraM protein
          1    6.3  29.6      0.029   11.4  16.4    1.4  2  TIGR02794 tolA_full: protein TolA
        1.6    5.6  11.1        2.8    4.8   7.7    1.3  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
          3    3.8  12.4          4    3.4   8.6    1.1  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   3.4      0.61   2.5e+02      59     117 ..      56     133 ..      33     152 .. 0.51
   2 !   48.1   0.0   5.5e-16   2.3e-13      10      66 ..     183     238 ..     178     279 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.61
   TIGR02349  59 raqYDqfghagleggaggggagfegfea................sefgdigdifeeffgggggsgrr...rskarrge 117
                  + YD    +++e+++ +++++ e++e+                +  ++ +++fe  ++++ +++++   ++k+r g+
  MMETSP1061-20121228|1898_1  56 HHYYDDENYEQAEQEQEQQQQQREKEEEakrleqearaareraeAVASERERLFEAEMQRMDEEQQKaalSQKKRDGK 133
                 444554444444443333222222222234455555555533322233355666666665554444434444444444 PP

  == domain 2    score: 48.1 bits;  conditional E-value: 5.5e-16
   TIGR02349  10 kdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfg 66 
                 +  se++i++ +rk a + HPD+n+ +  aee f  ++eA  +Lsd++ r++YD   
  MMETSP1061-20121228|1898_1 183 RGPSEKDIRRQFRKRALEVHPDKNR-DGRAEEAFVAVEEAATILSDPRLRKEYDSER 238
                 67799********************.999*************************833 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.6   6.8       5.3   2.2e+03     418     483 ..      55     121 ..      31     141 .. 0.55
   2 !   37.2   0.0   6.3e-13   2.6e-10      10      64 ..     181     235 ..     178     238 .. 0.94

  Alignments for each domain:
  == domain 1    score: -5.6 bits;  conditional E-value: 5.3
   TIGR03835 418 nidwykqedpkdledlvqdqat.leiteedq.iseekveeetsvestavedq.vveaikeeeelleqkk 483
                   ++y  e++++ e+ +++q+   e++ee + + +e    +  +e++a e + + ea  e + + e ++
  MMETSP1061-20121228|1898_1  55 HHHYYDDENYEQAEQEQEQQQQqREKEEEAKrLEQEARAARERAEAVASERErLFEA--EMQRMDEEQQ 121
                 445667777777555444443303333333313333444555667777764315555..4444433333 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 6.3e-13
   TIGR03835  10 idrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryD 64 
                 + r   e++i++ frk a   hPD+n++  a++ f  + ea  +Ls+P+ r++yD
  MMETSP1061-20121228|1898_1 181 LLRGPSEKDIRRQFRKRALEVHPDKNRDGRAEEAFVAVEEAATILSDPRLRKEYD 235
                 5677789***********************************************9 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.5   6.6e-05     0.027     292     402 ..      31     145 ..      15     168 .. 0.43

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.6e-05
   TIGR02442 292 evteedvreaaeLvlkhRrrrkpfeeeqekeekkleekkeeak..pdeekedes..eekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavska 402
                 +v ++d  e ++ vl+   +++ ++++  ++e+ ++ ++e+++  ++ eke+e+   e+e++  +++ e    +++   e e ++ +ee+++a  ++ ++ gk++r  l +++++
  MMETSP1061-20121228|1898_1  31 SVDADDEDEFVRQVLEEDEHQHDQHHHYYDDENYEQAEQEQEQqqQQREKEEEAkrLEQEARAARERAEAVASERERLFEAEMQRMDEEQQKAALSQKKRDGKTVRSVLRSSERN 145
                 5555555566666665555555555542222222222222222002222222221112222221222222333333333334444444444444445555555554443333333 PP

>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.9   0.00021     0.086       5     113 ..      14     122 ..      11     141 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00021
   TIGR03927   5 Lllflflpsadsaaenngkldvk.pnryekkdiEkntellqgeetelekelftpeeqkkikkkkkkekk.eqeelkdqLfsenatesntvkktkkqLFsseyeqtsssses 113
                 Ll++l+l   ++ +++ g++d +  +++ ++ +E ++  + +   +++ e   + eq++ +++++ ek+ e ++l++       +  ++v+++ + LF  e +    ++++
  MMETSP1061-20121228|1898_1  14 LLALLLLA-WSAILAAAGSVDADdEDEFVRQVLEEDEHQHDQHHHYYDDENYEQAEQEQEQQQQQREKEeEAKRLEQEAR-AARERAEAVASERERLFEAEMQRMDEEQQK 122
                 44444444.34555555555543135555555555555555556666664444455555444444444404455555555.688999999999999998877666555555 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   5.7   0.00026      0.11      50     147 ..      30     128 ..      10     157 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00026
   TIGR03752  50 lgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkle.dvaaeke 147
                   +++d   + +r +  e ++ +++ ++  ++ +  ++e+e+ ++++++ +e+ +++le+e+++++++ e++++e+++l e+  + +++ + + a +++
  MMETSP1061-20121228|1898_1  30 GSVDADDEDEFVRQVLEEDEHQHDQHHHYYDDENYEQAEQEQEQQQQQREKEEEAKRLEQEARAARERAEAVASERERLFEAEMQRMDEEQqKAALSQK 128
                 468999999999999999888777777766555555567777777777888888899999999999999999999887665533333222212222222 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.7   0.00052      0.21     194     308 ..      43     198 ..      25     274 .. 0.46

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00052
   TIGR00934 194 elvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeesses...........................................rriqekikrrl 308
                 ++ ++de+++ + ++  +d + + +++e+ + ++  e++e+ k+ +  +    +r e++  + e l +++m+ +++++++a++ +k ++ +++++  ++++                                              + i+ + ++r+
  MMETSP1061-20121228|1898_1  43 QVLEEDEHQHDQHHHYYDDENYEQAEQEQEQQQQQREKEEEAKRLEQEARAARERAEAVASERERLFEAEMQRMDEEQQKAALSQKKRDGKTVRSVLRSSE--RnnlygvlgirnvslqlparevslgsglfrftipgltllrgpseKDIRRQFRKRA 198
                 33333333333333333333333333444333333444444444444444555555555555555555555555555555544444222222222222221..1113333333333344444444444444444444444444433334444444444 PP

>> TIGR03779  Bac_Flav_CT_M: Bacteroides conjugative transposon TraM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   9.9    0.0032       1.3     136     211 ..      63     138 ..      30     152 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0032
   TIGR03779 136 fyeekksdeek.ellkeveelesrleeeqekkeeleeqla.llEksyelaakylprvqerrqeapeskkgkkasvkav 211
                  ye++++++e+ ++++e ee  +rle+e++++ e  e++a + E+++e  ++ +++ q++++ ++++  gk+  v +v
  MMETSP1061-20121228|1898_1  63 NYEQAEQEQEQqQQQREKEEEAKRLEQEARAARERAEAVAsERERLFEAEMQRMDEEQQKAALSQKKRDGKT--VRSV 138
                 3677777777645555555555888888877777777765389*********99988887776444444433..4444 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  16.4     7e-05     0.029      92     175 ..      46     129 ..      12     143 .. 0.45
   2 ?   -3.5   0.2       2.4   9.8e+02     118     118 ..     222     222 ..     188     257 .. 0.49

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7e-05
   TIGR02794  92 aeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEa.kakaeaeaKa.ekkakeeAakkaEeeakakaaaeakk 175
                 +e ++q ++      ++++  +ae+++++++ +++++ee++++ ++Ea +a++ aea a e+ +  eA+ ++ +e + kaa  +kk
  MMETSP1061-20121228|1898_1  46 EEDEHQHDQ-HHHYYDDENYEQAEQEQEQQQ-QQREKEEEAKRLEQEArAARERAEAVAsERERLFEAEMQRMDEEQQKAALSQKK 129
                 333333333.222222222223443333322.233333333333444434444444422344444445555444443344433333 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.4
   TIGR02794 118 a 118
                 a
  MMETSP1061-20121228|1898_1 222 A 222
                 1 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   7.7    0.0067       2.8      22      95 ..      65     144 ..      41     163 .. 0.56

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0067
   TIGR01554  22 ekeeeaeeekkekdalkaeidkleaeierleea.......aaeeeakeaasgeagkeeeeeeeakeeaaea.fraylrrgdd 95 
                 e++e+++e++++  ++++e ++le+e ++++e+       ++++ ++e +++++++++++ +++k+    + +r  lr+ ++
  MMETSP1061-20121228|1898_1  65 EQAEQEQEQQQQQREKEEEAKRLEQEARAARERaeavaseRERLFEAEMQRMDEEQQKAALSQKKRDG--KtVRSVLRSSER 144
                 44444444444444566677777666666666666555333333333333333333333333322222..236666666555 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   8.6    0.0098         4     533     624 ..      40     127 ..      24     162 .. 0.47

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0098
   TIGR01069 533 elekllkeleklkkeleqkakelkererklkkelekeaqealkaakkeveeiirelkekkiekakekkatellkklkeekakvpqkpknlqa 624
                  + ++l+e e ++++ ++ + + + ++ + ++e++++++e+     +e++ + +e++  ++ ++ +  + e l + + ++    q++  l +
  MMETSP1061-20121228|1898_1  40 FVRQVLEEDEHQHDQHHHYYDDENYEQAEQEQEQQQQQREK----EEEAKRLEQEARAARERAEAVASERERLFEAEMQRMDEEQQKAALSQ 127
                 44455555555555555555555444444444444444443....33333333333333333333333333442222222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       616  (0.150171); expected 82.0 (0.02)
Passed bias filter:                      227  (0.0553389); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1147.91
//
Query:       MMETSP1061-20121228|1892_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   13.4   0.1      0.046   12.2   0.1    1.6  1  TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family


Domain annotation for each model (and alignments):
>> TIGR01725  phge_HK97_gp10: phage protein, HK97 gp10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.1   1.1e-05     0.046      35      93 ..      82     139 ..      67     146 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.1e-05
   TIGR01725  35 raaaksnapvekgkkhksirdsikkkkkaGvksvtvgvgkknawyarflEfGTskqkaq 93 
                 + ++++++  ++ +++ +   ++++ ++ G  sv+++   kna+y   +E GT  q+ q
  MMETSP1061-20121228|1892_1  82 KRRLRKESNSNNNNSNNNNNSNKDSRRSLGSGSVVIKDY-KNAQYFGVVEIGTPPQSFQ 139
                 455566665566665555444444444447777777777.6************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 2323.81
//
Query:       MMETSP1061-20121228|1915_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 1385.89
//
Query:       MMETSP1061-20121228|1906_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 2063.20
//
Query:       MMETSP1061-20121228|1918_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 367.27
//
Query:       MMETSP1061-20121228|1917_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-07   27.9   0.7    2.9e-07   27.9   0.5    1.6  2  TIGR01053 LSD1: zinc finger domain, LSD1 subclass
  ------ inclusion threshold ------
       0.94    5.8   5.5        1.1    5.6   3.8    1.0  1  TIGR00595 priA: primosomal protein N'


Domain annotation for each model (and alignments):
>> TIGR01053  LSD1: zinc finger domain, LSD1 subclass
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.5   1.4e-10   2.9e-07       4      29 ..      39      64 ..      36      66 .. 0.95
   2 ?   -4.4   1.5       1.7   3.5e+03      22      25 ..      71      74 ..      70      75 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 1.4e-10
   TIGR01053  4 CsgCRtlLmyprGAssvRCalCqtvn 29
                C  CR +  +p G++s RCa C t+n
  MMETSP1061-20121228|1917_1 39 CEKCRVPYDLPGGSTSWRCANCSTFN 64
                999**********************9 PP

  == domain 2    score: -4.4 bits;  conditional E-value: 1.7
   TIGR01053 22 CalC 25
                C +C
  MMETSP1061-20121228|1917_1 71 CPCC 74
                8888 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   3.8   0.00052       1.1     226     263 ..      37      75 ..      33      77 .] 0.88

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00052
   TIGR00595 226 lkCprCdvsltlHkkegkLrCHyCgs.qepipetCpaCe 263
                   C +C v + l   +   rC  C++ ++++p +Cp+C 
  MMETSP1061-20121228|1917_1  37 FYCEKCRVPYDLPGGSTSWRCANCSTfNTTTPAECPCCV 75 
                 67**********************8637889*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 350.45
//
Query:       MMETSP1061-20121228|1913_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    7.0  10.6       0.17    9.7   2.9    2.4  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.9   4.1e-05      0.17      68     147 ..     147     226 ..     102     266 .. 0.59
   2 ?    0.3   0.3      0.03   1.2e+02      68      88 ..     556     576 ..     531     602 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.1e-05
   TIGR03499  68 kaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselal....eeedperakllkkl 147
                 +  e++++++++++++ +++ +e++++++e  +  +++++++++++r++ ++l+e+++k+ + l +    +    era +l+  
  MMETSP1061-20121228|1913_1 147 NDNENENENENNENDDDDDDDDEQQQPKEEFFNDDNDNDNAEAAKWREQARELREQIQKMEADLPDrpisD----ERAAALDAA 226
                 11111111111122222222223333333334444444444558888888888888888888887753332....222222222 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.03
   TIGR03499  68 kaleeaepkklskaeekeeke 88 
                 +  ++++++++++++++++k 
  MMETSP1061-20121228|1913_1 556 SDGPQQQQQQQQPEQKRQRKV 576
                 222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.47
# Mc/sec: 1713.05
//
Query:       MMETSP1061-20121228|1916_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 1876.39
//
Query:       MMETSP1061-20121228|1919_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   18.1   6.8    0.00049   17.3   4.7    1.5  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   4.7   1.2e-07   0.00049      22      58 ..      19      55 ..      13     162 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.2e-07
   TIGR00599 22 pldtslRChvCkdffkaPvltsCsHtFCslCiRrcLs 58
                 +d+ + Ch+C d    Pv+t C+H +C  C+ ++L+
  MMETSP1061-20121228|1919_1 19 SVDSRFSCHICFDEVTEPVVTRCGHLYCWPCLFQWLE 55
                5899***************************988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.43
# Mc/sec: 1016.01
//
Query:       MMETSP1061-20121228|1922_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-17   60.2   0.8    4.6e-17   60.1   0.6    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.6   1.1e-20   4.6e-17       2     117 ..       8     124 ..       7     126 .] 0.77

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 1.1e-20
   TIGR00601   2 kltlKtlkqqkfkidlep.detvkelKekiesekgkdayevaqqkLiyaGkiLsD.dktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptp.satpasvaekksaaPasa 117
                 +lt++   ++ ++i +++ + t+ e+K  ies ++   +e ++q+L+y G+iL D d+++++y++   +   ++v   K  ka+a++ a+ +++a+++t  s+t +s+++++++aP+ a
  MMETSP1061-20121228|1922_1   8 SLTVRLCDGESLSITVSSsESTIGETKLTIESARS--DFEASRQRLVYKGRILDDdDRSLSDYGVTASNSTLFLVMSGKPKKAAASATATRTATATSSTStSSTTTSTPTSSNPAPTPA 124
                 799999999*****88761679**********999..9***************862689******998877666655555555555555555566665555788889999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 692.94
//
Query:       MMETSP1061-20121228|1925_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 447.62
//
Query:       MMETSP1061-20121228|1929_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|1926_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.9   0.0       0.84    7.1   0.0    2.3  2  TIGR00235 udk: uridine kinase
     0.0026   14.7   0.1     0.0043   14.0   0.0    1.2  1  TIGR00750 lao: LAO/AO transport system ATPase
      0.004   15.0   0.2      0.021   12.7   0.0    2.0  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
      0.006   13.7   0.0      0.011   12.9   0.0    1.3  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
  ------ inclusion threshold ------
      0.012   13.2   0.0       0.02   12.6   0.0    1.3  1  TIGR00152 TIGR00152: dephospho-CoA kinase
      0.026   10.9   0.0      0.038   10.4   0.0    1.1  1  TIGR00955 3a01204: pigment precursor permease
      0.035    9.8   0.0      0.049    9.4   0.0    1.1  1  TIGR01448 recD_rel: helicase, RecD/TraA family
       0.05   10.6   0.0      0.073   10.1   0.0    1.1  1  TIGR01420 pilT_fam: twitching motility protein


Domain annotation for each model (and alignments):
>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0016      0.84       8      32 ..      82     106 ..      77     110 .. 0.88
   2 !    6.3   0.0    0.0029       1.5      63     118 ..     175     231 ..     172     238 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0016
   TIGR00235   8 iigiaGasgsGkttvaekivellkk 32 
                  i+++G+ g+Gk+t+a+ + + ++ 
  MMETSP1061-20121228|1926_1  82 WIAVTGGPGAGKSTLASAVADRINR 106
                 59*****************999986 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0029
   TIGR00235  63 PdaldldlllehlknLkkgkavdvPvYdyvehtrkketvkvepkk.vvileGilllv 118
                 P ++d + l   l + kk  +  +P Yd    +   + v++ p + +v++eGi+ll 
  MMETSP1061-20121228|1926_1 175 PWTFDPEALSADLAEAKKSGKASLPDYDRALSDPVGDVVSIDPSHaIVLVEGIYLLL 231
                 77899999999999999999**********************97537889***9985 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   8.3e-06    0.0043      37      61 ..      83     107 ..      74     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.3e-06
   TIGR00750  37 vGltGvPGaGkstlveklieelrrr 61 
                 + +tG PGaGkstl ++++ ++ rr
  MMETSP1061-20121228|1926_1  83 IAVTGGPGAGKSTLASAVADRINRR 107
                 789****************999998 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   4.1e-05     0.021       3      26 ..      83     106 ..      81     113 .. 0.90
   2 ?   -0.3   0.0      0.41   2.1e+02      98     121 ..     291     314 ..     289     335 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.1e-05
   TIGR02173   3 ivisGpPGsGkttvakilaeklsl 26 
                 i+++G PG+Gk+t+a+ +a++++ 
  MMETSP1061-20121228|1926_1  83 IAVTGGPGAGKSTLASAVADRINR 106
                 89******************9876 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.41
   TIGR02173  98 aslevraeriakrenksltealke 121
                  +le++ +ri +r   + t+a +e
  MMETSP1061-20121228|1926_1 291 TPLEIQTKRIVERSLETWTKAKTE 314
                 68999999**99998888887765 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.2e-05     0.011     136     166 ..      80     110 ..      75     113 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.2e-05
   TIGR02782 136 rknilvvGGtgsGkttLanallaeiaksapd 166
                 r  i v+GG g+Gk tLa a+ ++i ++a +
  MMETSP1061-20121228|1926_1  80 RCWIAVTGGPGAGKSTLASAVADRINRRACE 110
                 56699********************987665 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   3.9e-05      0.02       2      22 ..      83     103 ..      82     107 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.9e-05
   TIGR00152   2 igltGgigsGKstvakilkdk 22 
                 i++tGg+g GKst+a +++d+
  MMETSP1061-20121228|1926_1  83 IAVTGGPGAGKSTLASAVADR 103
                 9**************999986 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   7.4e-05     0.038      54      76 ..      83     105 ..      60     113 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 7.4e-05
   TIGR00955  54 lAvlGsSGaGKtTLlnalafrse 76 
                 +Av G+ GaGK+TL +a+a r +
  MMETSP1061-20121228|1926_1  83 IAVTGGPGAGKSTLASAVADRIN 105
                 8******************9976 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   9.5e-05     0.049     343     362 ..      85     104 ..      78     110 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 9.5e-05
   TIGR01448 343 ltGGPGtGKtTvtkaiiela 362
                 +tGGPG GK+T+  a+++  
  MMETSP1061-20121228|1926_1  85 VTGGPGAGKSTLASAVADRI 104
                 7**************99865 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00014     0.073     124     150 ..      82     108 ..      74     111 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00014
   TIGR01420 124 lilvtGptGsGKsttlAslidyinkek 150
                  i vtG  G+GKst   ++ d in+++
  MMETSP1061-20121228|1926_1  82 WIAVTGGPGAGKSTLASAVADRINRRA 108
                 589***********99999*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        67  (0.0163335); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 1061.91
//
Query:       MMETSP1061-20121228|1921_1  [L=1137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-149  495.6   0.1   3.5e-149  495.0   0.1    1.2  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
   2.9e-124  412.4   2.7   3.7e-124  412.1   0.0    2.1  2  TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase
      6e-46  154.2   0.0    1.5e-45  152.9   0.0    1.7  1  TIGR00639 PurN: phosphoribosylglycinamide formyltransferase
    1.5e-23   81.6   0.0    2.4e-23   81.0   0.0    1.2  1  TIGR00655 PurU: formyltetrahydrofolate deformylase
    3.4e-18   63.6   0.0    5.6e-18   62.9   0.0    1.2  1  TIGR00460 fmt: methionyl-tRNA formyltransferase
    3.7e-08   30.5   0.1    7.6e-08   29.5   0.0    1.4  1  TIGR01379 thiL: thiamine-monophosphate kinase
      5e-06   23.5   0.0    9.8e-06   22.6   0.0    1.4  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
     0.0014   15.3   0.0     0.0032   14.2   0.0    1.5  1  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
     0.0095   13.1   0.0      0.018   12.2   0.0    1.4  1  TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit


Domain annotation for each model (and alignments):
>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  495.0   0.1  7.7e-152  3.5e-149       3     424 ..     160     592 ..     159     593 .. 0.95

  Alignments for each domain:
  == domain 1    score: 495.0 bits;  conditional E-value: 7.7e-152
   TIGR00877   3 vlvvgnggRehalaeklakseqvkevyvapgNaGtarlekekeveievt.dleevvefakkkkidlavigpEapLvlGlvdaleea..GikvfGpkkeAaklEasKafakdllkkagiptaeyevftepeeakeyieekgap.aivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefleGeEvsllalvdgktvvplplaqdhkrvlegDkgpnTGGmGayspapvvteevekkiaeeiveptvealkkegtpykGvLyaglmltkegepkvlefnvRfgDpeaqavLplLksdllevllavvegkLkevelkfeeka.avavvlasegyPedyvkgdeitg.eekeeaekekvfyAgveeeegklv.tsggRvlavvalgksleeArekayeavekikfeg......lfyRkdiglral 424
                 v+vvg+ggRehala +laks+ v+ev+++pgN+Gta  e+ k  ++ ++   ++v+++ k+++ +++v+gpEapLv+Glvd++  +   + +fGp+k+Aa+lEasKaf+kd+l++++ipta+y++ft+ +ea +y+e+ +++ + vvka+gLaaGKgv + ++++e+++av+ei+++k+fg+ag++ viE+fl G E+s++al+dgkt v +p+aqdhkr+l++D+g+nTGGmGay+pap vt++++k+i+ + ++ tve+++++gtpy G+Lyag+mlt +g p+vlefn+RfgDpe+q+vLplL++dl+e+++a+++g L++v+++f+e++ a +vv a++gyP +y kg ei+g +e+++ e++kv++Ag++ +e++++  sggRvla+++lg++l++A ++ay++v++++f g      ++ R dig +a+
  MMETSP1061-20121228|1921_1 160 VIVVGSGGREHALAVALAKSPLVSEVLCCPGNGGTASEENPKIKNKGADqSNKTVIALTKEVGAKMVVVGPEAPLVAGLVDEMSVEcpDVLCFGPSKAAAELEASKAFSKDFLQECDIPTAKYRTFTDSAEAIKYVESLDDNdRQVVKASGLAAGKGVLLPTTKQETIDAVKEIMSDKAFGDAGDTCVIESFLTGPEASCFALCDGKTAVLMPAAQDHKRALDNDEGLNTGGMGAYAPAPCVTPDLQKEIEAMCIK-TVEKMAERGTPYVGLLYAGMMLTPDG-PYVLEFNCRFGDPETQVVLPLLETDLYEIMTACCTGTLDSVDVRFKEDVsAATVVCAAQGYPLKYPKGMEIKGlDEAKSIEGVKVYHAGTKLDENSITrCSGGRVLAITGLGSDLKSALNTAYKGVDAVSFIGddgaalMHNRTDIGRKAT 592
                 89*********************************999888877776663567899*************************986652279************************************************9988789*********************************************************************************************************999885.99************************.*********************************************9987257889999***************9999999************999987369*****************************976666777899*****9986 PP

>> TIGR00878  purM: phosphoribosylformylglycinamidine cyclo-ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.5      0.24   1.1e+02      96     183 ..      73     168 ..      66     187 .. 0.68
   2 !  412.1   0.0  8.2e-127  3.7e-124       1     329 [.     789    1120 ..     789    1123 .. 0.95

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.24
   TIGR00878  96 PlallDYlavgkldeevleeivkG.laeGckeagvalvGGetaelPglikede...yDlagtavgvvek.deiitgekv...kegdvliglessGi 183
                 P  + +Y+a       v ++i +G  +     a  +l+GG   +  g i++de      ag a++++ k d+   +e+v   k  dv+i + s G 
  MMETSP1061-20121228|1921_1  73 PTTVTEYIASSSEADLVRSKILAGgAVVAYDVASSSLLGGSIGDALGAINGDEksqSSFAGAALAAISKlDAKAVDEAVgpsKRKDVVIVVGSGGR 168
                 77888999988777777777766515556678999*************999872224567777777765232223333323367799999999884 PP

  == domain 2    score: 412.1 bits;  conditional E-value: 8.2e-127
   TIGR00878    1 ltYkdaGvdieageelvkalkelvkktkrlevagelggfaglvelkdk...ykepvlvsstDGvGtklkvaeavdkhdtvGiDlvamnvnDllvvGaePlallDYlavgkldeevleeivkGlaeGckeagvalvGGetaelPglikedeyDlagtavgvvekdeiitgekvkegdvliglessGihsnGlsLvRkvleeeaaldledkveeeg.ktlgeellePtriYvkeilelikeekvkglahitGggllenllrvlkeelkaevdksseeleevFkllqeaGnveeeemfrtFnmGvGfvvivkeeevdkalklleekgek.aleiGkv 329 
                  ++Y+daGv+i+ag++lv+++k + k t+r + + +lggf+gl++l+++    ke+vl+ +tDGvGtkl++a++++kh tvGiDlvam+vnDl+v G ePl++lDY+a+g+l+++ ++e+vkG+aeGc++ag+ l+GGetae+P ++ +++yDlag++vg+v++d+i+  +++ +gdvl+gl+ssGihsnG+sLvRk++e+e  + ++ + ++++ +t+g+ ll+Pt+iYvk  l l+k+ ++kg++hitGggllenl+r+l++++ ae+ +++    +vF ++++a  ++++em+rtFn+GvG+v+iv++e + +a+++l + ge+  + +G++
  MMETSP1061-20121228|1921_1  789 ISYADAGVSIDAGNNLVEMIKPFCKATRRAGCDADLGGFGGLFDLSAAgydAKETVLIGATDGVGTKLRIAQKTKKHSTVGIDLVAMCVNDLIVAGGEPLFFLDYFATGHLEVNEASEVVKGIAEGCRQAGCGLIGGETAEMPSMYAPGDYDLAGFSVGAVHRDRILP-QNIGAGDVLLGLASSGIHSNGFSLVRKLIEKEGLSYDSPCPWDSSvETIGDSLLTPTKIYVKASLPLLKKGIIKGMSHITGGGLLENLPRTLPKGIGAEITNHPSLP-SVFAWMKNASGLDDNEMLRTFNCGVGMVIIVDKESAAEAKQMLVDAGEEvVYDLGTL 1120
                  68*******************************************99876679*****************************************************************************************************************96.68***************************9999987777777654389*****************************************************999876.5********99*****************************99987776515678876 PP

>> TIGR00639  PurN: phosphoribosylglycinamide formyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.9   0.0   3.3e-48   1.5e-45       2     188 ..     597     787 ..     596     790 .. 0.94

  Alignments for each domain:
  == domain 1    score: 152.9 bits;  conditional E-value: 3.3e-48
   TIGR00639   2 kivvliSGsGsnlqalidalkeekidakvvlvisdkkkayglerakd..aniptkvlslkdyesreefdeelaeelkeeevdlivlAGfmrilgstflsafagkilNiHPsLlpafpG...lhaveqAleagvkeaGctVHyvdeevDtGpiivqakvpilpedteetleqRikkaEhkllpeaiaklaqqr 188
                 +i+vl S +G+ l  +++a+ ++ +da++v+vis+k +a  le+ ++  a + +k +s+k   sr+++d+e +++l  + v+ + l G+mril+++f + +ag+ +N+HPsLlp+++G   l++++  ++ag++e+Gct+H v+eevD+Gpi+vq+kv + ++dt e+l+++++  E  +++eaia +++++
  MMETSP1061-20121228|1921_1 597 RIGVLGSTRGTALIPVMEACASGALDAEIVAVISNKSDAPILEKGRSlgATVVSKFVSAKG-LSRAQYDAECTAALVGAGVEYVLLIGYMRILSASFCKFWAGRCINVHPSLLPKHAGdmdLRVHQAVIDAGEEESGCTIHEVTEEVDGGPILVQKKVAVSKDDTAESLKAKVQPLEGPAFVEAIASVTKGK 787
                 89***************************************99776522677888888776.589*****************************************************98888999999**********************************************************99876 PP

>> TIGR00655  PurU: formyltetrahydrofolate deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   5.2e-26   2.4e-23      78     275 ..     589     793 ..     574     798 .. 0.87

  Alignments for each domain:
  == domain 1    score: 81.0 bits;  conditional E-value: 5.2e-26
   TIGR00655  78 laladklkrvvilvskeehClldlllrvrsGeLeveialvisnheelr..elvekfd..ipfhlvpaeketrveaekkelellkelevdlvvLakymriLspdfvkryenkiinihhsfLPafiGakP...yqrayerGvkiiGatahyvteeLdeGPiieqdvvrvdhkdsvedliraGrdvekvvLaravklvledrvlvyen 275
                  + ++k  r+ +l s+    l  ++    sG+L++ei++visn  ++   e  ++++  +  ++v+a+  +r++ + +  ++l  + v++v+L  ymriLs  f k +  + in+h s+LP   G      +q   + G    G t h vtee+d GPi++q  v v+  d++e+l+ + + +e   +  a+  v + + + y +
  MMETSP1061-20121228|1921_1 589 RKATQKKLRIGVLGSTRGTALIPVMEACASGALDAEIVAVISNKSDAPilEKGRSLGatVVSKFVSAKGLSRAQYDAECTAALVGAGVEYVLLIGYMRILSASFCKFWAGRCINVHPSLLPKHAGDMDlrvHQAVIDAGEEESGCTIHEVTEEVDGGPILVQKKVAVSKDDTAESLKAKVQPLEGPAFVEAIASVTKGKAISYAD 793
                 456788889***********************************98751144455552256678999**********************************************************8642215556799**********************************************999999999999988888866 PP

>> TIGR00460  fmt: methionyl-tRNA formyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   1.2e-20   5.6e-18      44     188 ..     644     787 ..     614     794 .. 0.78

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 1.2e-20
   TIGR00460  44 llpppvkvlaekkgipvlqpekqelleeledveelkpdvivvvsfGkllpkelldlfplgviNvHpSlLPryrGaAPi..qrail.eGdtktgvtimqlkeelDaGdilkqeevaieeednskeLsdklselgaqlLietlkellegk 188
                 l    v ++  +kg+   q+  +      ++v+++  + ++ + + ++l+  + +     +iNvHpSlLP++ G   +  ++a++ +G+ ++g ti ++ ee+D G+il+q++va++++d+ + L++k++ l     +e++  +++gk
  MMETSP1061-20121228|1921_1 644 LGATVVSKFVSAKGLSRAQYDAEC---TAALVGAG-VEYVLLIGYMRILSASFCKFWAGRCINVHPSLLPKHAGDMDLrvHQAVIdAGEEESGCTIHEVTEEVDGGPILVQKKVAVSKDDTAESLKAKVQPLEGPAFVEAIASVTKGK 787
                 555555555555555555555444...44555554.36677899******************************9865337777647*******************************************998777788887777776 PP

>> TIGR01379  thiL: thiamine-monophosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.7e-10   7.6e-08      41     124 ..     848     931 ..     832     944 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.7e-10
   TIGR01379  41 ttDtlvegvhFleet.ppedlgwkavavnlSDlaAmGatPkalllslglpedldeeeleallkGlkelakkygvklvGGDtvkss 124
                  tD +  +    ++t +  ++g  +va+ + Dl+  G++P ++l  ++  + l+++e+++++kG++e + + g+ l+GG+t + +
  MMETSP1061-20121228|1921_1 848 ATDGVGTKLRIAQKTkKHSTVGIDLVAMCVNDLIVAGGEPLFFLDYFATGH-LEVNEASEVVKGIAEGCRQAGCGLIGGETAEMP 931
                 56666666666777778999**********************999999996.*****************************9885 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   2.1e-08   9.8e-06      87     269 ..     245     429 ..     235     464 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.1e-08
   TIGR01205  87 ellgipyvGsgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafe......ydeevlveeaikgrelevsvlekeealpiieiveekekedFydYeaKYldgsaelvipae.lseeeeekikelalkaykalgcrglaRvD 269
                 e+ ++ + G++ +a+ l   K ++K +l++ ++p+a+y +++ + e+  +  +e+l+  +   +vK++ +    Gv   ++++e  +a++e ++         ++++e ++ g e ++ +l ++++   +   + +  ++ +d ++  + g   +  pa+ +++ ++++i+++ +k+++++  rg   v 
  MMETSP1061-20121228|1921_1 245 ECPDVLCFGPSKAAAELEASKAFSKDFLQECDIPTAKYRTFTDSAEA-IK-YVESLD-DNDRQVVKASGLAAGKGVLLPTTKQETIDAVKEIMSdkafgdAGDTCVIESFLTGPEASCFALCDGKTAVLMPAAQDH--KRALDNDEGLNTGGMGAYAPAPcVTPDLQKEIEAMCIKTVEKMAERGTPYVG 429
                 55678899*********************************543333.33.344444.345679****999999999999998888887765431111124579******************77744444444444..599***********999999999*********************99865544 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.1e-06    0.0032      99     292 ..     248     450 ..     211     478 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.1e-06
   TIGR00514  99 gltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiG..ypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdcsiqrrkqkllee......apspaltselrkkiGeaavkaaksigytgaGtveflld....kegefyflemntr 292
                 ++   Gps  a +l   k+ +k+ +++ ++p+         d +ea++  +++      ++ka++   G+G+ +  +++e ++++k   ++ + +   d++ +e f+  p       l+d    v+  + +d      +   l+       ap+p +t++l+k+i  +++k++++++ +g+  v +l+     + +  y le n r
  MMETSP1061-20121228|1921_1 248 DVLCFGPSKAAAELEASKAFSKDFLQECDIPTAKYR--TFTDSAEAIKYVESLDdnDRQVVKASGLAAGKGVLLPTTKQETIDAVKEIMSDKAFGDAGDTCVIESFLTGPEASC-FALCDGKTAVLMPAAQDHKRALDNDEGLNTggmgayAPAPCVTPDLQKEIEAMCIKTVEKMAERGTPYVGLLYAgmmlTPDGPYVLEFNCR 450
                 566678888888888889999999999888876543..45666777777776651145799***************************9999999999************8765.5689999999999999987666666555432233339************************999999999888621112334577777776 PP

>> TIGR01161  purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.9e-05     0.018      86     240 ..     252     421 ..     236     450 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.9e-05
   TIGR01161  86 vapspealallqdkltqkqllqklglavpeflvelkeeeelekaleelg..lpvvlKarkggYDGrGqfvikseeeleqalkalgdk........elivEefvkfekElsvivaRskeGeva.fyPvvenlqkd....gilrl....vvapa.alpeklqkkaeelarklveeld 240
                 + ps++a +l ++k+  k +lq+ +++++++ +  ++++e  k +e+l+   + v+Ka+ ++  G+G+ +   ++e+ +a+k++  +        ++++E+f +   E s+      +G++a   P ++ +++     + l++     +apa  +  +lqk++e+++ k ve++ 
  MMETSP1061-20121228|1921_1 252 FGPSKAAAELEASKAFSKDFLQECDIPTAKYRTF-TDSAEAIKYVESLDdnDRQVVKASGLA-AGKGVLLPTTKQETIDAVKEIMSDkafgdagdTCVIESFLT-GPEASCFALC--DGKTAvLMPAAQDHKRAldndEGLNTggmgAYAPApCVTPDLQKEIEAMCIKTVEKMA 421
                 5689999999**********************83.34444444556665115799***9998.6****998887777777666543336666677899999986.5677777654..4444314576665543222223333222224555544666777888888877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.19s 00:00:00.75 Elapsed: 00:00:00.63
# Mc/sec: 2382.09
//
Query:       MMETSP1061-20121228|1934_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1439.31
//
Query:       MMETSP1061-20121228|1935_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1137.84
//
Query:       MMETSP1061-20121228|1938_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|1940_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-08   32.9   0.9    5.2e-05   21.6   0.2    3.0  3  TIGR00158 L9: ribosomal protein L9


Domain annotation for each model (and alignments):
>> TIGR00158  L9: ribosomal protein L9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   1.3e-08   5.2e-05       1      71 [.      51     118 ..      51     125 .. 0.77
   2 ?    0.8   0.0     0.032   1.3e+02      85     105 ..     159     179 ..     146     194 .. 0.82
   3 !    7.2   0.0   0.00035       1.4     119     145 ..     246     272 ..     229     273 .] 0.87

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.3e-08
   TIGR00158   1 mkviLkedvknlGkkgdvveVkdGyarnfLipkglavlatkknieklearrkkkeekeaaekaaaaklkev 71 
                 m+v L+  +   G++gdv+ V + +  n L p++la   t + ++k  + +++k + +   +a a+ lke+
  MMETSP1061-20121228|1940_1  51 MQVKLLRHIPGTGQAGDVIMVNPVFFANKLRPQKLARAITDEEVQKDLETKQEKSDAL---RAEAKALKEL 118
                 99***************************************99987544444444444...4444444443 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.032
   TIGR00158  85 degklfgsittkeiadavkka 105
                 d  klfg i  k++++a++++
  MMETSP1061-20121228|1940_1 159 DGTKLFGGIGPKKLMEALRTN 179
                 5679************99874 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00035
   TIGR00158 119 gviktlGeyevelklheevvavlkvev 145
                  +ik++G y +++ l ++ +a + v v
  MMETSP1061-20121228|1940_1 246 MTIKNTGVYRIKVSLTKDLFARVMVLV 272
                 479*******************99977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 1126.03
//
Query:       MMETSP1061-20121228|1933_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-67  221.4   0.0    1.3e-32  109.7   0.0    2.4  2  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    1.4e-19   67.9   0.0    1.1e-09   36.3   0.0    2.5  2  TIGR02180 GRX_euk: glutaredoxin
    2.5e-17   60.8   0.0    7.7e-08   30.3   0.0    2.6  2  TIGR02181 GRX_bact: glutaredoxin 3
    2.1e-08   31.9   0.0     0.0005   17.8   0.0    2.5  2  TIGR02190 GlrX-dom: glutaredoxin-family domain
    1.1e-07   29.8   0.0      7e-07   27.2   0.0    2.1  2  TIGR01068 thioredoxin: thioredoxin
    3.2e-07   28.6   0.0       0.11   10.8   0.0    3.4  3  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    1.5e-06   26.0   0.0     0.0066   14.3   0.0    2.6  2  TIGR02189 GlrX-like_plant: glutaredoxin-like family
      0.002   16.3   0.0        2.8    6.3   0.0    3.3  3  TIGR02200 GlrX_actino: glutaredoxin-like protein
     0.0041   15.5   0.0        1.6    7.2   0.0    2.5  2  TIGR00014 arsC: arsenate reductase (glutaredoxin)


Domain annotation for each model (and alignments):
>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.7   0.0   2.8e-35   1.3e-32       3      93 ..     158     248 ..     156     253 .. 0.96
   2 !  109.3   0.0   3.7e-35   1.7e-32       3      98 ..     287     390 ..     285     391 .. 0.89

  Alignments for each domain:
  == domain 1    score: 109.7 bits;  conditional E-value: 2.8e-35
   TIGR00365   3 ekikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgel 93 
                  ++++ v+ ++vvl+mkG p+ p+CGfs +av++l   ++ +a++++led+++r++lkeys+WPt+Pq+yv+gel+GG di++e +++g+l
  MMETSP1061-20121228|1933_1 158 ARLSKLVQMDTVVLFMKGIPDKPRCGFSRQAVELLALHKIPYASFDILEDNDVRQGLKEYSDWPTYPQIYVRGELMGGLDILKETAAAGSL 248
                 578899*******************************************************************************999987 PP

  == domain 2    score: 109.3 bits;  conditional E-value: 3.7e-35
   TIGR00365   3 ekikeqvkenkvvlymkGtpelpqCGfsakavqilkalg........vefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkllk 98 
                 +++++ v++++v+l+mkG p+ p+CGfs ++v++l++l+        v++ ++++l+dee+r++lk++s+WPt+Pqlyv+gelvGG di++el esg+l ++lk
  MMETSP1061-20121228|1933_1 287 DRLTKLVNRHPVMLFMKGLPSNPKCGFSRQTVELLDSLSlsedstavVSYDAFDILSDEEVRQGLKQFSDWPTYPQLYVNGELVGGLDILRELDESGDLLDVLK 390
                 78999******************************87642222222248999***********************************************98876 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   3.6e-10   1.6e-07       5      80 ..     178     248 ..     169     251 .. 0.88
   2 !   36.3   0.0   2.3e-12   1.1e-09       6      82 ..     308     387 ..     298     389 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 3.6e-10
   TIGR02180   5 sKsyCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkl 80 
                  K+ C ++++a elL+  k+   ++  ++ +    +++++ Lke+++  t P+i+++g+ +GG d lk+    g l
  MMETSP1061-20121228|1933_1 178 DKPRCGFSRQAVELLALHKIP--YASFDILED---NDVRQGLKEYSDWPTYPQIYVRGELMGGLDILKETAAAGSL 248
                 4899************77788..888887665...89****************************99999988877 PP

  == domain 2    score: 36.3 bits;  conditional E-value: 2.3e-12
   TIGR02180   6 KsyCpYckkakelLkklkvkka.levveldkle..ngselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgklee 82 
                  + C +++++ elL++l+++++  +vv  d  +    +e+++ Lk++++  t P++++ng+ +GG d l++l+++g l +
  MMETSP1061-20121228|1933_1 308 NPKCGFSRQTVELLDSLSLSEDsTAVVSYDAFDilSDEEVRQGLKQFSDWPTYPQLYVNGELVGGLDILRELDESGDLLD 387
                 578***************888889***999986225689*************************************9976 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   1.7e-10   7.7e-08       6      76 ..     179     248 ..     176     251 .. 0.94
   2 !   27.6   0.0   1.2e-09   5.5e-07       6      80 .]     308     389 ..     305     389 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.7e-10
   TIGR02181   6 kksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigdvhvGGcddLlaleregkL 76 
                 k+ C+++++A +lL+ +++ +  +++ +d++ r+ + e s+   t PQi++  + +GG d L +   +g+L
  MMETSP1061-20121228|1933_1 179 KPRCGFSRQAVELLALHKIPYASFDILEDNDVRQGLKEYSD-WPTYPQIYVRGELMGGLDILKETAAAGSL 248
                 678*************************************5.*******************9999988886 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 1.2e-09
   TIGR02181   6 kksCpycsrAkalLeekg........vefeeievdkdkeareemierskgrrtvPQifigdvhvGGcddLlaleregkLdkLL 80 
                 +++C+++++  +lL++ +        v+++ +++ +d+e r+ + + s+   t PQ++++ + vGG d L +l+++g+L ++L
  MMETSP1061-20121228|1933_1 308 NPKCGFSRQTVELLDSLSlsedstavVSYDAFDILSDEEVRQGLKQFSD-WPTYPQLYVNGELVGGLDILRELDESGDLLDVL 389
                 56788888888888754311122222589999999999**********5.****************************87665 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.1e-06    0.0005      14      76 ..     178     241 ..     162     244 .. 0.81
   2 !   11.5   0.0   0.00011     0.048      41      75 ..     344     377 ..     332     379 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.1e-06
   TIGR02190  14 tkpGCPfCakakavLkekGldf..eeivLgkdirtrslravtGattvPqvfinGkliGgsdelea 76 
                  kp C f  +a ++L+ + + +   +i  ++d+r + l+  +   t Pq+++ G+l+Gg d l++
  MMETSP1061-20121228|1933_1 178 DKPRCGFSRQAVELLALHKIPYasFDILEDNDVR-QGLKEYSDWPTYPQIYVRGELMGGLDILKE 241
                 4899*********998887666115788899998.589***********************9986 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00011
   TIGR02190  41 gkdirtrslravtGattvPqvfinGkliGgsdele 75 
                 ++++r + l+  +   t Pq ++nG+l+Gg d l+
  MMETSP1061-20121228|1933_1 344 DEEVR-QGLKQFSDWPTYPQLYVNGELVGGLDILR 377
                 55554.45777778889**************9886 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.5e-09     7e-07       9      78 ..      21      91 ..      14     104 .. 0.80
   2 ?   -0.7   0.0      0.76   3.5e+02      62      90 ..     159     187 ..     152     194 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.5e-09
   TIGR01068  9 tvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdee..qeiaakygirsiPtlllfkng 78
                  +s++k  ++ f A+W  +C ml  vl  l+++ ++++ + K++ ++   +e++++ g++ +Pt++l+  g
  MMETSP1061-20121228|1933_1 21 NSNSKSKS-VLLFGADWHEACSMLETVLGALSASFNNDILFGKVDAESAaaTELTETLGVTMVPTVVLLLLG 91
                33344444.5559********************************99752268899**********997655 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.76
   TIGR01068  62 akygirsiPtlllfkngkevkrvvGakpk 90 
                 +  ++  + t++lf +g   k   G+  +
  MMETSP1061-20121228|1933_1 159 RLSKLVQMDTVVLFMKGIPDKPRCGFSRQ 187
                 555677899********999999998764 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0043         2       4      55 ..      31      86 ..      28      92 .. 0.80
   2 !   10.8   0.0   0.00025      0.11       8      64 ..     180     236 ..     176     242 .. 0.91
   3 !    6.9   0.0    0.0041       1.9      24      65 ..     333     374 ..     307     381 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0043
   TIGR02196  4 vYttpwCppCkkakeyLkskgiafee....idvekdsaaaeellkklgqrsvPviv 55
                ++  +w   C  ++  L +   +f++      v+++saaa el++ lg   vP++v
  MMETSP1061-20121228|1933_1 31 LFGADWHEACSMLETVLGALSASFNNdilfGKVDAESAAATELTETLGVTMVPTVV 86
                566777788888888888888888763333379999******************98 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00025
   TIGR02196   8 pwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivigekivvGF 64 
                 p C+  ++a e L  + i++  +d+ +d+  ++ l + ++    P+i + ++++ G 
  MMETSP1061-20121228|1933_1 180 PRCGFSRQAVELLALHKIPYASFDILEDNDVRQGLKEYSDWPTYPQIYVRGELMGGL 236
                 78********************************9999999999***9998877665 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0041
   TIGR02196  24 giafeeidvekdsaaaeellkklgqrsvPvivigekivvGFd 65 
                  ++++++d+  d++ ++ l + ++    P++ +++++v G d
  MMETSP1061-20121228|1933_1 333 VVSYDAFDILSDEEVRQGLKQFSDWPTYPQLYVNGELVGGLD 374
                 599*******************************99888866 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00054      0.25      18      87 ..     182     248 ..     160     256 .. 0.70
   2 !   14.3   0.0   1.4e-05    0.0066      45      92 ..     343     390 ..     290     392 .] 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00054
   TIGR02189  18 CClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsL 87 
                 C +s  + +Ll  + +  a +++ ++   +++ + l e++  ++ P ++v G+l+Ggl+ +      gsL
  MMETSP1061-20121228|1933_1 182 CGFSRQAVELLALHKIPYASFDILED---NDVRQGLKEYSDWPTYPQIYVRGELMGGLDILKETAAAGSL 248
                 55555555555555555555555544...6777778888889****************988766666666 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.4e-05
   TIGR02189  45 eakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpllk 92 
                 + +e+ + l +++  ++ P ++v G+lvGgl+ +  l  sg+L ++lk
  MMETSP1061-20121228|1933_1 343 SDEEVRQGLKQFSDWPTYPQLYVNGELVGGLDILRELDESGDLLDVLK 390
                 456788889999999*****************************9998 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0062       2.8       4      55 ..      31      85 ..      28      88 .. 0.73
   2 ?    5.6   0.0      0.01       4.7       8      37 ..     180     209 ..     176     216 .. 0.91
   3 ?   -0.4   0.0      0.78   3.5e+02      24      37 ..     333     346 ..     307     355 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0062
   TIGR02200  4 vYatswCgyCaslkrtLdkdgaeYevv....diekdeeaadyvksvndGnktvPtV 55
                +++++w   C +l ++L    a+++       ++ + +aa        G  +vPtV
  MMETSP1061-20121228|1933_1 31 LFGADWHEACSMLETVLGALSASFNNDilfgKVDAESAAATELTETL-GVTMVPTV 85
                7899**************99999985212225666666666555555.88888888 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.01
   TIGR02200   8 swCgyCaslkrtLdkdgaeYevvdiekdee 37 
                 + Cg+ +++ + L  + ++Y   di +d++
  MMETSP1061-20121228|1933_1 180 PRCGFSRQAVELLALHKIPYASFDILEDND 209
                 67***********************99975 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.78
   TIGR02200  24 gaeYevvdiekdee 37 
                  ++Y++ di  dee
  MMETSP1061-20121228|1933_1 333 VVSYDAFDILSDEE 346
                 35788888888876 PP

>> TIGR00014  arsC: arsenate reductase (glutaredoxin)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0098       4.5       6      34 ..     179     207 ..     175     220 .. 0.75
   2 !    7.2   0.0    0.0034       1.6       6      22 ..     308     324 ..     305     353 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0098
   TIGR00014   6 nPrCsksretLalledkgiepevvkyLkn 34 
                  PrC+ sr++++ll  ++i     + L++
  MMETSP1061-20121228|1933_1 179 KPRCGFSRQAVELLALHKIPYASFDILED 207
                 7************9888776655555555 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0034
   TIGR00014   6 nPrCsksretLalledk 22 
                 nP+C+ sr+t++ll+  
  MMETSP1061-20121228|1933_1 308 NPKCGFSRQTVELLDSL 324
                 9************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 1437.21
//
Query:       MMETSP1061-20121228|1936_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.52
# Mc/sec: 1627.02
//
Query:       MMETSP1061-20121228|1942_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 576.35
//
Query:       MMETSP1061-20121228|1945_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1209.02
//
Query:       MMETSP1061-20121228|1946_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1061-20121228|1952_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|1953_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   14.6   0.1     0.0086   14.3   0.1    1.1  1  TIGR04102 SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family


Domain annotation for each model (and alignments):
>> TIGR04102  SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   2.1e-06    0.0086      20      95 ..      10      84 ..       2      88 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.1e-06
   TIGR04102 20 ntkrevklGsekaPlelvvqseerkaeveallaehelfaeievdadkeeniaeLeallnkpktvtvektpnrndpC 95
                n k+ v +  +++ l l    e++k +ve +l+   l     ++  ++e ia+L +   + +t +++ +++r +p 
  MMETSP1061-20121228|1953_1 10 NDKEVVLAAVNNQGLALEFADESQKGDVEIVLK-ALLQNPEAIECGSQESIAQLAMYYVEHRTRNFDSQAERSEPS 84
                455566667788999999999999999998776.4577777899*****************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 505.96
//
Query:       MMETSP1061-20121228|1955_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 389.68
//
Query:       MMETSP1061-20121228|1960_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-32  111.1   0.0      4e-32  109.8   0.0    1.6  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    4.3e-14   50.6   0.0    1.1e-10   39.4   0.0    2.4  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    5.2e-11   40.1   0.0    3.6e-09   34.1   0.0    2.7  3  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    5.7e-11   40.4   0.0    7.8e-09   33.4   0.0    2.2  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.5e-09   33.9   0.0    2.5e-08   31.5   0.0    2.0  2  TIGR02415 23BDH: acetoin reductases
    1.9e-08   32.0   0.0    2.1e-06   25.3   0.0    2.3  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.1e-07   29.3   0.0    1.8e-07   28.7   0.0    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase
      7e-05   19.2   0.0    9.4e-05   18.8   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    0.00017   18.9   0.0     0.0011   16.2   0.0    1.9  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
     0.0003   18.1   0.1    0.00067   16.9   0.0    1.6  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
     0.0028   14.8   0.2      0.058   10.4   0.0    2.1  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   1.1e-34     4e-32       6     312 ..       4     346 ..       1     349 [. 0.74

  Alignments for each domain:
  == domain 1    score: 109.8 bits;  conditional E-value: 1.1e-34
   TIGR01289   6 viitgas.sglglaaakalve..kgkwhvvmacrdlekaekaaksl..glpkdsytilkldlasldsvrkfveqfres..........grsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvtanskelagkvpi......kadlgdlsgleaglkaan..iami.dgkefkaakaykdsklcnmltvrelhrryhd........etgivfaslypgcvadtglfrehlpl....frtlfppfqkyitkgyvseeeagkrlaqvvadpklkksgv.ywswgkrq.esfeqelseevsddekakklwelseklv 312
                 +i+tgas s +g+ aak l++   g ++v++acr   k ++a   +    p+ +   ++ldlas+ds+rkfv++ +++          + sl++lv na v        + ++dg e  v+ nh+g fll++llledlkk++   +  i+  s+    k +  +  +      + +  d + ++  l  ++  + ++  +++f++  +y+ sklcn+  + el rr  d        ++ +  +++ pg +  tgl r + +l    +r ++  f +yi  g     e g  +    +  ++  +g+ y+   + + e      s+e+ d++kak lw++s k  
  MMETSP1061-20121228|1960_1   4 AIVTGASpSSIGFIAAKKLASpeFG-YKVILACRSSAKGKEAEGLIrsAHPSSKVEYIHLDLASFDSIRKFVDDVHALddgaisdatkEGSLNILVNNAGVAWGKDTPYVETSDGLEEIVGVNHFGTFLLTQLLLEDLKKAKGGARVTIVSSSLHEKNKMMEKRSKPssatdpDEKTEDDDPIKKKLLLPDfpTGILpSSENFDGFNSYQVSKLCNLWFAYELQRRLDDgeaggsdaKSSVRVNAISPGFIPSTGLTRRSGTLgkffLRYVLDSF-RYIGMGVTRSPEDGAEVIVQASTSEVASTGAqYFELPRGTsEIVPIASSDESLDETKAKALWDMSLKTC 346
                 799***9789********9962156.************9998765511567777889****************998652211222212458***********999888889*****************************98876666666666666665554443333222122233444455554444422334426789************************98743222222345889****************9887222124455555.79*****9999999999999999999999983455555442556667889999************9865 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   3.1e-13   1.1e-10       1     135 [.       4     153 ..       4     160 .. 0.79
   2 !    8.6   0.0   0.00079      0.29     167     183 ..     239     255 ..     235     265 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 3.1e-13
   TIGR01830   1 alvtGas.rgiGkaiakklak..egakvviterskeekaeelaeelke..agvkaaavkldvsdeeevkelveevee..........elgeidilvnnAGit..rDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriiniss 135
                 a+vtGas  +iG   akkla+   g+kv++  rs+ +k +e++  +++     k+  ++ld+++ ++++++v++v++          + g+++ilvnnAG++  +D+  ++  ++  +e++ vn  g+f +t+  l+ + k++ G+ ++i s
  MMETSP1061-20121228|1960_1   4 AIVTGASpSSIGFIAAKKLASpeFGYKVILACRSS-AKGKEAEGLIRSahPSSKVEYIHLDLASFDSIRKFVDDVHAlddgaisdatKEGSLNILVNNAGVAwgKDTPYVET-SDGLEEIVGVNHFGTFLLTQLLLEDLKKAKGGARVTIVS 153
                 79***99568*********9633699***996655.555666666655224689999***************9986422222222226789**********75588888885.5679****************************9888866 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00079
   TIGR01830 167 asrnitvnavaPGfiet 183
                 a+ +++vna++PGfi +
  MMETSP1061-20121228|1960_1 239 AKSSVRVNAISPGFIPS 255
                 6789***********65 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   9.7e-12   3.6e-09       2     138 ..       2     154 ..       1     167 [. 0.79
   2 ?   -2.7   0.0       1.6   6.1e+02     203     236 ..     182     215 ..     178     218 .. 0.86
   3 ?    2.8   0.0     0.033        12     169     184 ..     239     254 ..     235     262 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 9.7e-12
   TIGR01963   2 kvalvtGaa.sGiglaiakela..aaGakvvvndleeeaaeaaakeleea..ggevlalkadvtkeeeiadlieavaa..........efgsldiLvnnAGiqhvapieefpt.ekfekiiavnltsafhtiraalpimkkqgwG.riiniasv 138
                 k a+vtGa+ s ig+  ak+la  + G kv++   ++++ ++a+  +++a  + +v+++++d+++ ++i++ ++ v+a          + gsl+iLvnnAG+   +     +t +  e+i+ vn  ++f +++  l  +kk++ G r+  i s 
  MMETSP1061-20121228|1960_1   2 KYAIVTGASpSSIGFIAAKKLAspEFGYKVILACRSSAKGKEAEGLIRSAhpSSKVEYIHLDLASFDSIRKFVDDVHAlddgaisdatKEGSLNILVNNAGVAWGKDTPYVETsDGLEEIVGVNHFGTFLLTQLLLEDLKKAKGGaRV-TIVSS 154
                 789****86599**********4346*******9999888888887765422789***************9999875422222222226799**********999887766652679**************************99554.44432 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.6
   TIGR01963 203 eeqvvkevllkkqptkrfvtveevaelalflasd 236
                  + ++k++ll++ pt+ + + e+  +   +++s+
  MMETSP1061-20121228|1960_1 182 DDPIKKKLLLPDFPTGILPSSENFDGFNSYQVSK 215
                 5678999*********999999999999999987 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.033
   TIGR01963 169 AetgitanaicPgyvr 184
                 A++ +++nai Pg++ 
  MMETSP1061-20121228|1960_1 239 AKSSVRVNAISPGFIP 254
                 8899**********94 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   2.1e-11   7.8e-09       2     137 ..       3     154 ..       2     165 .. 0.78
   2 ?    4.6   0.0     0.012       4.6     168     184 ..     238     254 ..     234     263 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 2.1e-11
   TIGR01829   2 valvtGgl.gGiGtaickrlakd..Gykvvanvap.neerakewlqekevegfdvavvkadvssfeeakaavakvea..........elGpvdvlvnnaGitrdavfkkm.tkeqWeevidtnlnsvfnvtrpviegmlergfG.riiniss 137
                  a+vtG++   iG   +k+la+   Gykv+ ++++  + +++e l +++   ++v  ++ d++sf++ ++ v++v+a          ++G++++lvnnaG++  +    + t++  ee++ +n  + f +t+ ++e++++ + G r+  +ss
  MMETSP1061-20121228|1960_1   3 YAIVTGASpSSIGFIAAKKLASPefGYKVILACRSsAKGKEAEGLIRSAHPSSKVEYIHLDLASFDSIRKFVDDVHAlddgaisdatKEGSLNILVNNAGVAWGKDTPYVeTSDGLEEIVGVNHFGTFLLTQLLLEDLKKAKGGaRVTIVSS 154
                 699***97468*********97444*******99855666777788888899*********************997544443443336899**********865544444156779*********************998766625555555 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.012
   TIGR01829 168 gakkgvtvnviaPGyia 184
                  ak++v vn+i+PG+i 
  MMETSP1061-20121228|1960_1 238 DAKSSVRVNAISPGFIP 254
                 5899***********95 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   6.7e-11   2.5e-08       1     136 [.       2     153 ..       2     172 .. 0.76
   2 ?   -0.4   0.0      0.37   1.4e+02     210     229 ..     276     295 ..     234     312 .. 0.53

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 6.7e-11
   TIGR02415   1 kvalvtGaa.qGiGkaiaerLakd..Gfavavadlneetaketakelkekg..tkavavkldvsdkseveeaveqa..........veklGeldvlvnnaGvalvtpilei.teeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaa 136
                 k a+vtGa+   iG   a++La    G++v++a    ++ ke++  ++++    k  +++ld+++ +++ + v++           ++k G+l++lvnnaGva  +    + t++ le++  vn +g++   q   e +kk k + ++   +
  MMETSP1061-20121228|1960_1   2 KYAIVTGASpSSIGFIAAKKLASPefGYKVILACRSSAKGKEAEGLIRSAHpsSKVEYIHLDLASFDSIRKFVDDVhalddgaisdATKEGSLNILVNNAGVAWGKDTPYVeTSDGLEEIVGVNHFGTFLLTQLLLEDLKKAKGGARVTIVS 153
                 689****97468*********9643399*****999*******99999876225677899***999998888875311222222224678************98776655427899************************999888764332 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.37
   TIGR02415 210 fsseiklGresePedvaelv 229
                   + i +G + +Ped ae++
  MMETSP1061-20121228|1960_1 276 SFRYIGMGVTRSPEDGAEVI 295
                 33456666677777777665 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   5.6e-09   2.1e-06       6     140 ..       2     154 ..       1     160 [. 0.74
   2 ?    4.2   0.0     0.015       5.6     172     187 ..     239     254 ..     235     261 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 5.6e-09
   TIGR01832   6 kvalvtGan.tGlGqgiavgla..eaGadivgvgisel..setqekveal..Grkflslkadladeeaakalvdeave..........eagkidilvnnaGiirredavefsekd.wddvlnvnlkavfllsqavakkllkqGrkgkiinias 140
                 k a+vtGa+ + +G   a  la  e G +++ + +s++  +e++  + +     k++ +++dla+ ++++++vd++ +          + g ++ilvnnaG+   +d+  +  +d  ++++ vn    fll+q + ++l k    +++  ++s
  MMETSP1061-20121228|1960_1   2 KYAIVTGASpSSIGFIAAKKLAspEFGYKVILACRSSAkgKEAEGLIRSAhpSSKVEYIHLDLASFDSIRKFVDDVHAlddgaisdatKEGSLNILVNNAGVAWGKDTPYVETSDgLEEIVGVNHFGTFLLTQLLLEDLKKAKGGARVTIVSS 154
                 789****98467999999999944579999988877652256666675542278999***************99875421222222224569***********999987776555389***************99988766554566555554 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.015
   TIGR01832 172 akkginvnaiaPGyle 187
                 ak++++vnai+PG++ 
  MMETSP1061-20121228|1960_1 239 AKSSVRVNAISPGFIP 254
                 7899**********95 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   4.8e-10   1.8e-07       2     150 ..       3     155 ..       2     162 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 4.8e-10
   TIGR01500   2 lllvtGas.rGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkalee......sikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelq.glektvvnls 150
                 +++vtGas   +G   a++la+   + g +++L  R+    ke++  i +  ++ +v+   ldl +   + +++  +++      s   +e +  +l+nnaG           +  s+ +++    n +    lt +ll  lk+++ g  +t+v +s
  MMETSP1061-20121228|1960_1   3 YAIVTGASpSSIGFIAAKKLAS--PEFGYKVILACRSSAKGKEAEGLIRSAHPSSKVEYIHLDLASFDSIRKFVDDVHAlddgaiSDATKEGSLNILVNNAGVAWGKDTPY--VETSDGLEEIVGVNHFGTFLLTQLLLEDLKKAKgGARVTIVSSS 155
                 89******4579**********..7889****************************************9*9999988772222222356777889*******876555555..55566899**********************99867888888655 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.5e-07   9.4e-05     415     553 ..       2     154 ..       1     175 [. 0.82

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.5e-07
   TIGR02632 415 rvalvtGga.sGiGrevarrlvde..GahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaev..........alayGGvdivvnnaGiavskpleete.leeWdlnldilatGyflvareaarllrkqglggnlvfias 553
                 + a+vtG++ s iG   a++l++   G  v+la   +++ ++ +  + + + + k+  ++ld+++ +++++ +++v          a + G ++i+vnnaG+a  k++   e  +  +  + ++  G fl+++     l+k + g+ + +++s
  MMETSP1061-20121228|1960_1   2 KYAIVTGASpSSIGFIAAKKLASPefGYKVILACRSSAKGKEAEGLIRSAHPSSKVEYIHLDLASFDSIRKFVDDVhalddgaisdATKEGSLNILVNNAGVAWGKDTPYVEtSDGLEEIVGVNHFGTFLLTQLLLEDLKKAKGGARVTIVSS 154
                 56899*986589*********964349******************************************998887743333333334567999************99988773455677889***********99999999999988888877 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.1e-06    0.0011      87     154 ..      87     155 ..      62     166 .. 0.76
   2 ?    0.1   0.0      0.26        96     186     216 ..     240     272 ..     236     312 .. 0.58

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.1e-06
   TIGR03971  87 gveefGrldvvvanaGvlsygra..felseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssv 154
                   ++ G l+++v+naGv+ +g+   +  +++  ++++ vn  G++   +  +  l  +k+G  + ivss+
  MMETSP1061-20121228|1960_1  87 DATKEGSLNILVNNAGVA-WGKDtpYVETSDGLEEIVGVNHFGTFLLTQLLLEDLKKAKGGARVTIVSSS 155
                 2345699*********96.66531266678999**************************99999999998 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.26
   TIGR03971 186 eygirvnsihPtsv.dtamiep.eamrelfakr 216
                 +  +rvn+i+P  + +t +++  ++  ++f+++
  MMETSP1061-20121228|1960_1 240 KSSVRVNAISPGFIpSTGLTRRsGTLGKFFLRY 272
                 5679*******9883455554313344555555 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.8e-06   0.00067       4     140 ..       2     154 ..       1     159 [. 0.65
   2 ?   -3.2   0.0       2.5   9.5e+02      22      55 ..     286     319 ..     280     331 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.8e-06
   TIGR03206   4 kvaivtggg.ggiggaicrrfaee..gakvavldlnaeaaekvaaairek..ggkaeavavditdrasvdaav...........aaaeealgpvdvlvnnag..wdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasd 140
                 k aivtg +   ig    +++a    g kv +   +    ++  + ir++    k e +  d+++ +s+   v           + a +  g  ++lvnnag  w +  p+++t ++  e ++ +n  g++ +   +l+ + + k g  v i s 
  MMETSP1061-20121228|1960_1   2 KYAIVTGASpSSIGFIAAKKLASPefGYKVILACRSSAKGKEAEGLIRSAhpSSKVEYIHLDLASFDSIRKFVddvhalddgaiSDA-TKEGSLNILVNNAGvaWGKDTPYVETSDGL-EEIVGVNHFGTFLLTQLLLEDLKKAKGGARVTIVSS 154
                 567777765245777667776643114554433333333334444565542245667788888887777554411111111000332.34699********9889999******9885.89******************9999999999988875 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.5
   TIGR03206  22 rfaeegakvavldlnaeaaekvaaairekggkae 55 
                 r  e+ga+v v   + e a + a+      g++e
  MMETSP1061-20121228|1960_1 286 RSPEDGAEVIVQASTSEVASTGAQYFELPRGTSE 319
                 5567788888877777777777766655555555 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00016     0.058      52     144 ..      69     154 ..      29     161 .. 0.76
   2 ?    2.2   0.0      0.05        19     176     247 ..     242     308 ..     237     312 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00016
   TIGR03325  52 kvvgvegdvrllddhkeavarcveafgkldtlipnagi.wdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsna 144
                  +   + dv  ldd   a++    + g l++l++nag+ w   t+ v+  d      ++e+  +n  g +l  +  l  l +++g++  t+  +
  MMETSP1061-20121228|1960_1  69 SIRKFVDDVHALDDG--AISD-ATKEGSLNILVNNAGVaWGKDTPYVETSD-----GLEEIVGVNHFGTFLLTQLLLEDLKKAKGGARVTIVSS 154
                 445555666666654..3333.35679**********98999999999765.....689**************************999998665 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.05
   TIGR03325 176 yvrvngvapgglstdlrglksldladksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltga 247
                  vrvn ++pg + +       l     ++ ++ l  +l+s   ig   ++    ga v+  + +  v  tga
  MMETSP1061-20121228|1960_1 242 SVRVNAISPGFIPST-----GLTRRSGTLGKFFLRYVLDSFRYIGMGVTRSPEDGAEVIVQASTSEVASTGA 308
                 79********99753.....3444556778888899999999999888888888999888888888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 1283.23
//
Query:       MMETSP1061-20121228|1957_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 855.48
//
Query:       MMETSP1061-20121228|1963_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 415.77
//
Query:       MMETSP1061-20121228|1962_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    5.2  10.0         13    2.1   7.2    1.9  2  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   7.2    0.0032        13     215     275 ..      67     127 ..      18     141 .. 0.52
   2 ?    0.2   0.0     0.012        49     399     418 ..     202     221 ..     179     235 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0032
   TIGR01651 215 tdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedae 275
                 + +++ ++de+++ +++e++++ + +  ++e  ++ +++ + ++ +  +dd   + d+da+
  MMETSP1061-20121228|1962_1  67 NIHKSQQDDENSDATSGEGSDETEGSESNKEGDDNVNDDVNDDVNDNVNDDAGADADADAD 127
                 2233333333333333333333333333333333333334444444444444444444443 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.012
   TIGR01651 399 idnsgsmrgrpitvaaicad 418
                 i n gs  gr i vaa+  d
  MMETSP1061-20121228|1962_1 202 ITNLGSYSGRRIEVAATTKD 221
                 8899************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 1419.69
//
Query:       MMETSP1061-20121228|1954_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.45
# Mc/sec: 2012.10
//
Query:       MMETSP1061-20121228|1967_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 868.35
//
Query:       MMETSP1061-20121228|1968_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.2    3.3  24.5        3.2    4.7   6.1    2.2  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.3   0.00079       3.2      86     132 ..      10      56 ..       4      87 .. 0.69
   2 ?    4.7   6.1   0.00077       3.2      84     130 ..     183     229 ..     130     253 .. 0.60

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00079
   TIGR00601  86 ePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatata 132
                  P+ +++sap+p+ps++p+s+++++ +a ++ +++ +++  ++ta+ 
  MMETSP1061-20121228|1968_1  10 VPSENSTSAPNPAPSEFPTSTPTSTLSASPTFAPNYTPSASPSTAAY 56 
                 57888889999999888888888888777777766666665555442 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.00077
   TIGR00601  84 aaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeata 130
                 +  P+ +++sap+p+ps++p+s+++++ +a ++ +++ +++  ++ta
  MMETSP1061-20121228|1968_1 183 SLVPSENSTSAPNPAPSEFPTSTPTSTLSASPTFAPNYTPSASPSTA 229
                 33455555555555555555555555555544444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1722.46
//
Query:       MMETSP1061-20121228|1965_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1719.98
//
Query:       MMETSP1061-20121228|1973_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.10s 00:00:00.18 Elapsed: 00:00:00.18
# Mc/sec: 388.63
//
Query:       MMETSP1061-20121228|1970_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-13   45.6   3.3       0.14   10.2   0.0    9.7 10  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0   0.00036       1.5       2      16 ..      65      79 ..      64      82 .. 0.91
   2 ?    1.2   0.0     0.025     1e+02      17      34 ..     136     153 ..     132     154 .. 0.85
   3 ?   -1.7   0.0      0.21   8.8e+02      17      27 ..     218     228 ..     217     229 .. 0.86
   4 ?   -2.0   0.0      0.27   1.1e+03       3      25 ..     247     269 ..     246     269 .. 0.79
   5 !   10.2   0.0   3.4e-05      0.14       2      23 ..     289     310 ..     288     310 .. 0.93
   6 !    6.5   0.0   0.00053       2.2       1      20 [.     328     347 ..     328     351 .. 0.90
   7 ?    2.1   0.1     0.013        53       1      15 [.     372     386 ..     372     404 .. 0.77
   8 ?    2.2   0.0     0.012        51      15      34 ..     433     453 ..     418     454 .. 0.84
   9 !    4.1   0.0    0.0031        13       1      21 [.     455     475 ..     455     482 .. 0.90
  10 ?   -0.9   0.1      0.12   4.9e+02       2      13 ..     501     512 ..     500     512 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00036
   TIGR00756  2 tyntlisglckagrv 16
                +y +++s+lc++gr+
  MMETSP1061-20121228|1970_1 65 SYQIVLSALCRRGRL 79
                8************97 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.025
   TIGR00756  17 eeAlelfdeMkergivPd 34 
                 e+A  l+ eM+ +gi P+
  MMETSP1061-20121228|1970_1 136 EKAQTLLYEMETDGIDPS 153
                 6777899********997 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.21
   TIGR00756  17 eeAlelfdeMk 27 
                 ++A ++++eMk
  MMETSP1061-20121228|1970_1 218 RHADRILREMK 228
                 6899******7 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 0.27
   TIGR00756   3 yntlisglckagrveeAlelfde 25 
                 y+  i +  k+++v eA++l+ e
  MMETSP1061-20121228|1970_1 247 YTNAILAWTKSNSVAEAHDLLSE 269
                 6666667789999*****99865 PP

  == domain 5    score: 10.2 bits;  conditional E-value: 3.4e-05
   TIGR00756   2 tyntlisglckagrveeAlelf 23 
                 ++n +is+ ++ gr+++A+e++
  MMETSP1061-20121228|1970_1 289 AFNGVISAWARIGRTDKAEEVL 310
                 79*****************996 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.00053
   TIGR00756   1 vtyntlisglckagrveeAl 20 
                 +tyn+++ g+ k ++ ++ l
  MMETSP1061-20121228|1970_1 328 FTYNSVLYGHLKDKKSDDSL 347
                 69************999876 PP

  == domain 7    score: 2.1 bits;  conditional E-value: 0.013
   TIGR00756   1 vtyntlisglckagr 15 
                 +ty +++++l+ ++r
  MMETSP1061-20121228|1970_1 372 FTYHCVLRALGSRNR 386
                 599999999998876 PP

  == domain 8    score: 2.2 bits;  conditional E-value: 0.012
   TIGR00756  15 rveeAlelfdeM.kergivPd 34 
                 ++e+Al++++++ +++ + Pd
  MMETSP1061-20121228|1970_1 433 NPEKALSVLNLLeLSQFCDPD 453
                 89*********9666677788 PP

  == domain 9    score: 4.1 bits;  conditional E-value: 0.0031
   TIGR00756   1 vtyntlisglckagrveeAle 21 
                 ++y+t i +++k+ +++ A++
  MMETSP1061-20121228|1970_1 455 ISYTTAIECFSKSTDPSAAER 475
                 59***********99999975 PP

  == domain 10    score: -0.9 bits;  conditional E-value: 0.12
   TIGR00756   2 tyntlisglcka 13 
                 ty+++i +l+k+
  MMETSP1061-20121228|1970_1 501 TYTMVILSLSKN 512
                 9*****999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 2616.49
//
Query:       MMETSP1061-20121228|1977_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 599.95
//
Query:       MMETSP1061-20121228|1976_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 951.23
//
Query:       MMETSP1061-20121228|1978_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-05   19.0  90.7     0.0072   11.9  37.3    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0012   14.5  92.5      0.019   10.5  41.3    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0  32.8   6.6e-06     0.013     694     911 ..      79     291 ..      18     299 .. 0.39
   2 !   11.9  37.3   3.5e-06    0.0072     683     942 ..     240     495 ..     239     508 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.6e-06
   TIGR02168 694 kiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel......keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekk 911
                 k+  l++ +ke++ ++++++ ele++++e +e   kl+ l++ele+++k      e +++l++el+++e + +++ e+l+ ++++       + + + +e+le+  +++++ +++l+++l+++e+e++el +++a k ++    +k i++l++   ++++q ee+++  +++e+ +e  +++ ee+e+ + el++ ka++++ l++lr+e  e ++ +re+e+ 
  MMETSP1061-20121228|1978_1  79 KLFILQDVVKEMDARHKQIQGELETAEREFQE---KLQTLESELEEAKKVTGVRDEAIQSLSDELKQMEVQHSSAIERLTTEKDKErekhakELSAQSVESLETAKAEFTTLIDELQSQLQSKEKEIEELGDKFAAKDSD---TQKIIDDLRN---DIAKQQEEQKDLETENEKTMEVDNKQTEESERMALELENLKAEHKQSLESLRSE--ESERAVREIESL 291
                 33334444444444444444333333333333...333333333333333333333333333333333333333333333332211000000222222233333333333333333333333333333333333332222...1111222222...222222222222222333333334444444444455555555555555555555..333334443333 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 3.5e-06
   TIGR02168 683 eleeeieeleekiaelekelkelekeleeleeeleklrkeleel.erklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieql.keelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiae 942
                 e+e+++e  +++++e e+ + ele+   e ++ le+lr+e+ e   r++++lk+e +++ + +++ e+++aq++ e+ ++e++   ++ + +e++++++e e+ ++e ++++++  +ee + l++++++l ae+++  e+++    +l+++++e ++++++l+e++      ee++e ++a+++  e+++e++++e e+l  e ++++ +++ +r +++ +++e r+  ++ +el+ e+e l++kl ++  +++ele+e ++
  MMETSP1061-20121228|1978_1 240 ENEKTMEVDNKQTEESERMALELENLKAEHKQSLESLRSEESERaVREIESLKAEHQQILEAIRTEESQRAQRDIEILKAEHQWIVTDVRTQESKKAAEEIESLKTEHQQDVKDVrQEESQRLTSEIERLTAEHEKVVEDYK---IQLDNITNERDEISTRLKEISTG---SEEQVEIATAAVKAGEKREERFRKESERLAHELKQSRLQVRIMRWSMNGVADENRQCLDQHRELTSEREDLEDKLDSALSKIAELEQEKQR 495
                 67888999999999999999999999999999999999887665389***********************************************999999999999999999876256677889999999999998888888...47788888888888887776655...556667777888888888888999999999999999999999999999*****************************99999999998765 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4  28.3   0.00031      0.63     716     940 ..      91     268 ..      54     275 .. 0.28
   2 !   10.5  41.3   9.1e-06     0.019     244     502 ..     234     495 ..     231     507 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00031
   TIGR02169 716 ekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeie.eelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleee 940
                  +++++i+ e   le  e++++e+l+ le++l+e ++     +e +++l+ e++++e + +   e l   +++++e++ +e++ +++e+le+  ++    ++e++++l+++e e e l ++                                               ++ +d +k +++l++++ ++++++++le+e ek  +  ++++++ e ++ el++l++e
  MMETSP1061-20121228|1978_1  91 DARHKQIQGE---LETAEREFQEKLQTLESELEEAKKVTGVRDEAIQSLSDELKQMEVQHSSAIERLTTEKDKEREKHAKELSaQSVESLETAKAEFTTLIDELQSQLQSKEKEIEELGDKF---------------------------------------------AAKDSDTQKIIDDLRNDIAKQQEEQKDLETENEKTMEVDNKQTEESERMALELENLKAE 268
                 1111111111...1122222222222222222222222222222222222222222222222222222222222222222211011122222222222222222222222221111111111.............................................11122222222222222222222222222222222222222222222222222222222 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 9.1e-06
   TIGR02169 244 ekelaeleeelekleeeieelekele.eiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelke.eleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkae.......qkleqlkedlekaekelrklkeeleklekelselerelaeleaqaka 502
                 +k+l++ +e+  +++++  e  ++++ e+e+  +e ++ +e+l +ee+ +  +++e+lkae +++ +ai+ +e++  + + ++ kae +   ++ + +e +++ ee +  +++ ++ +k+ ++ e + l +e+e + +e++++   ++++k +l+++++e++e+     rl+e +   ee+++ + a++++ e++ + + +e e la+e+k+++       + ++ ++++  +  +++r+l++e e+le++l ++ +++aele +++ 
  MMETSP1061-20121228|1978_1 234 QKDLETENEKTMEVDNKQTEESERMAlELENLKAEHKQSLESLRSEESERAVREIESLKAEHQQILEAIRTEESQRAQRDIEILKAEHQWIVTDVRTQESKKAAEEIESLKTEHQQDVKDVRQeESQRLTSEIERLTAEHEKV---VEDYKIQLDNITNERDEIS---TRLKEISTGSEEQVEIATAAVKAGEKREERFRKESERLAHELKQSRlqvrimrWSMNGVADENRQCLDQHRELTSEREDLEDKLDSALSKIAELEQEKQR 495
                 6778887788888887777777777724555555667789*********************************************************************9*99999999866515567888888888877766...568999************9...8888888888888888888888888888888888777777777776111111155555566666666677777777777777777777777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       831  (0.202584); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.02u 0.25s 00:00:01.27 Elapsed: 00:00:00.95
# Mc/sec: 709.96
//
Query:       MMETSP1061-20121228|1981_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   11.7   0.1      0.034   11.6   0.0    1.0  1  TIGR01112 mtrD: tetrahydromethanopterin S-methyltransferase, subunit D


Domain annotation for each model (and alignments):
>> TIGR01112  mtrD: tetrahydromethanopterin S-methyltransferase, subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.3e-06     0.034     127     162 ..      19      53 ..       6      62 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.3e-06
   TIGR01112 127 gteghglptvsfvsgiigaalggiggalvyyaliev 162
                 g  g g+ t s  +giig+  g  gg+l y   ++ 
  MMETSP1061-20121228|1981_1  19 GPPGAGVNT-SLSAGIIGGKDGAPGGSLHYQQQQQQ 53 
                 566888887.7899***************9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 204.27
//
Query:       MMETSP1061-20121228|1980_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.09s 00:00:00.19 Elapsed: 00:00:00.21
# Mc/sec: 465.10
//
Query:       MMETSP1061-20121228|1979_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1151.49
//
Query:       MMETSP1061-20121228|1983_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.46
# Mc/sec: 1761.77
//
Query:       MMETSP1061-20121228|1982_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.50
# Mc/sec: 1473.00
//
Query:       MMETSP1061-20121228|1986_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1484.88
//
Query:       MMETSP1061-20121228|1989_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.40
# Mc/sec: 1309.99
//
Query:       MMETSP1061-20121228|1992_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.17
# Mc/sec: 846.28
//
Query:       MMETSP1061-20121228|1991_1  [L=769]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.30
# Mc/sec: 3383.32
//
Query:       MMETSP1061-20121228|1990_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1330.04
//
Query:       MMETSP1061-20121228|1994_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     7e-167  553.6   0.0   1.1e-166  553.0   0.0    1.3  1  TIGR00457 asnS: asparagine--tRNA ligase
    2.5e-52  176.1   0.0    2.7e-44  149.6   0.0    2.5  2  TIGR00458 aspS_arch: aspartate--tRNA ligase
    1.9e-27   93.7   0.0    1.4e-14   51.2   0.0    3.1  3  TIGR00459 aspS_bact: aspartate--tRNA ligase
    1.2e-17   61.5   0.1    1.6e-07   28.2   0.0    3.9  3  TIGR00499 lysS_bact: lysine--tRNA ligase
    1.9e-07   28.6   0.0    1.4e-05   22.5   0.0    3.0  2  TIGR00462 genX: EF-P lysine aminoacylase GenX
     0.0039   14.4   0.0        2.1    5.5   0.0    3.1  3  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
     0.0075   13.1   0.0        2.5    4.8   0.0    3.1  3  TIGR00442 hisS: histidine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  553.0   0.0  1.9e-169  1.1e-166       3     455 .]      39     565 .]      37     565 .] 0.94

  Alignments for each domain:
  == domain 1    score: 553.0 bits;  conditional E-value: 1.9e-169
   TIGR00457   3 aikdlleq.vkkavdeevkvsgWvktkR..sskkiaFlelrDGsslkalqavikkeleeeleqelkklttgssvsvsgkvvespkkkqelElkvkkievvgeae..........eedyplqkkehsleflrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvkt.........................................................egvdfskdffgkeayLtvsgqlelEalalalskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavleeakqelkfleknv..ekkkikkleeiisskfaritYtdAieiLkesda..kkkfeledlwGvdlktehErflaeeyfksPvfvtdyPkeikaFYmkqnddektvaavDllvPkiGEiiGGseReddldkLeerlkeegldteelkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpRtaesikf 455
                 +ik++l++  ++  +++++v gW +t R   ++++ F+el+DGs+ + +q+v+++e+ e  ++   +  tg+s  + g+++ s++++q++El+v++ +++g +            + y++ kk h+le++r++ahLr+R+++  A +++R+++++a+h++f+++gf++++tPilt +dcEGage F v+t                                                          +vd+s+dffgk   Ltvsgql++E+ a+als+vyt+gptFRAE+s+t RHl+EfwmiEpE++F++l d+++l+e+++ky ++  le+++++l+f+e++   e     +l++++++ f+r+tYt+Aie+L+++ +     fe e++wG+dl +ehEr+l+e++ k+Pv+++dyPk+ikaFYmk n+d+ktvaa+D+lvPkiGEiiGGs+Re+++d+L++r++e+gld  + +WyldlR+yG+vph+GfGlG+eRl+ ++tgl+nird+ipfpR +++++f
  MMETSP1061-20121228|1994_1  39 RIKEVLKNdGAQYLNQTITVAGWARTTRnaNKGQLLFVELNDGSTGESIQCVLDSEKCEGFAECKASGGTGASFQMVGTLIPSQGAGQAVELAVTTGKLLGAVYggnlqgtevgGAFYAMSKKAHTLEHMRDHAHLRPRGRVHAAAMRIRHCMAYATHNFFHNHGFLYIHTPILTGADCEGAGEQFGVTTmlgsdhlatdielskvepppvedtsklskselkrrakqaakekakidptkpvheevvGAVDYSNDFFGKRVNLTVSGQLNVETHACALSDVYTFGPTFRAENSHTGRHLAEFWMIEPEICFADLTDDINLAEDYLKYCVQFALENCQEDLEFFENSPhgEVGLRDRLKNVLDNPFKRLTYTEAIEVLQKAVKedGVVFEEEPVWGIDLPSEHERYLCEKVYKKPVVLMDYPKDIKAFYMKLNEDQKTVAAADILVPKIGEIIGGSQREHRMDVLKTRCEEMGLDPRQVWWYLDLRRYGTVPHAGFGLGFERLILFVTGLQNIRDVIPFPRYPQNAEF 565
                 68888875157889**************766789*********************98888888888999**************************9999987753333222222356******************************************************************************************************************************987546**********************************************************************************************9865116677899**********************986644678****************************************************************************************************************************************9987 PP

>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   8.3e-09   4.9e-06      13     186 ..      54     238 ..      46     245 .. 0.70
   2 !  149.6   0.0   4.6e-47   2.7e-44     175     424 ..     293     561 ..     282     564 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 8.3e-09
   TIGR00458  13 kevllrgwvheird..lGalifvllrdreg..liqilvkkkkvskelfklikklkkesvvavkGkvkekekapqgleiipeklevlneakeplPldlee.........kveaeldtrldarfldlrrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeityfereaflaqs 186
                 + +++ gw   +r+  +G+l+fv l d  +   iq ++ ++k +  + +   +  +     + G++  ++ a q++e+ +++ + l        l+ +e         k    l+   d+  l  r     a ++ir+ +  +  +f++++gf+ ++tP l ++  eG  e f +t + +  +la  
  MMETSP1061-20121228|1994_1  54 QTITVAGWARTTRNanKGQLLFVELNDGSTgeSIQCVLDSEKCEG-FAECKASGGTGASFQMVGTLIPSQGAGQAVELAVTTGKLLGAVY-GGNLQGTEvggafyamsKKAHTLEHMRDHAHLRPRGRVHAAAMRIRHCMAYATHNFFHNHGFLYIHTPILTGADCEGAGEQFGVTTMLGSDHLATD 238
                 667888888888852256788888887543226888888888754.33333344455556667788888888888888877766654332.222333322222222225555667777888888888888999******************************************998888777765 PP

  == domain 2    score: 149.6 bits;  conditional E-value: 4.6e-47
   TIGR00458 175 tyfereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkk...........elevlevklevpeeklerltydeaieilrakGkeik........dgedlsteaekllGek.mdglyfitdfPteikPfytmPdednPeisksfdllyrdleissGaqrihdydllvekikakGlePeslksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPrdrk 424
                  +f ++  l+ s ql+     a+ l  vy  +P frae+++t rhl+e+  i+ e++f+d  d +++ e+ ++  ++   e++++           e+++ ++  +v +++++rlty eaie+l+++ ke +        +g dl+ e e++l ek ++    ++d+P +ik fy+  +ed+  ++ +  l+ +  ei  G+qr h  d+l+ +  + Gl+P  +  yl+  +yG  PhaG GlG erl++++++l+nir+++ fPr ++
  MMETSP1061-20121228|1994_1 293 DFFGKRVNLTVSGQLNVETH-ACALSDVYTFGPTFRAENSHTGRHLAEFWMIEPEICFADLTDDINLAEDYLKYCVQFALENCQEdleffensphgEVGLRDRLKNVLDNPFKRLTYTEAIEVLQKAVKEDGvvfeeepvWGIDLPSEHERYLCEKvYKKPVVLMDYPKDIKAFYMKLNEDQKTVAAADILVPKIGEIIGGSQREHRMDVLKTRCEEMGLDPRQVWWYLDLRRYGTVPHAGFGLGFERLILFVTGLQNIRDVIPFPRYPQ 561
                 5899999999*****98875.77899*********************************9988776666655555555555555544558888888888888888999***************98875542211112233899***********883566678889*********999988877777766777899***********************************************************************876 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   1.7e-13     1e-10      13     176 ..      50     222 ..      38     231 .. 0.76
   2 ?   -2.7   0.0      0.48   2.8e+02     215     254 ..     324     364 ..     318     383 .. 0.83
   3 !   51.2   0.0   2.3e-17   1.4e-14     427     561 ..     430     563 ..     403     565 .] 0.76

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 1.7e-13
   TIGR00459  13 kslgkkvtlaGWve..rrkdlGeliFidlrDkeg..ivqvvsdkk.keale..lakelrnedvvqvkgkvslre.e.esknrnldtgei..evlaeeitvlnkskkkPleiekkeaeeevrlkyRYLdLRrpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGard 176
                 + l++++t+aGW +  r+ + G+l F+ l D +    +q v d +  e ++  +a++  +    q++g+++  + + + ++  + tg++   v+  +++ ++      ++ +k ++ e++r  + +L  R +  +  ++ R+ ++ a+ nf++++gFl i tPiLt a  eGa +
  MMETSP1061-20121228|1994_1  50 QYLNQTITVAGWARttRNANKGQLLFVELNDGSTgeSIQCVLDSEkCEGFAecKASG-GTGASFQMVGTLIPSQgAgQAVELAVTTGKLlgAVYGGNLQGTEVGGAFYAMSKKAHTLEHMR-DHAHLRPRGRVHAAAMRIRHCMAYATHNFFHNHGFLYIHTPILTGADCEGAGE 222
                 679*********99434556899********6544899*999888433332003333.345667888887654413134455677888744577778888888888888888999999976.7899**********************************************965 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.48
   TIGR00459 215 rcfRDeDlRaDRq.PeftqiDlemsFlnqedvmelveklvs 254
                   fR e++   R   ef  i+ e+ F++  d ++l+e+ ++
  MMETSP1061-20121228|1994_1 324 PTFRAENSHTGRHlAEFWMIEPEICFADLTDDINLAEDYLK 364
                 579999999999757*************9999999998775 PP

  == domain 3    score: 51.2 bits;  conditional E-value: 2.3e-17
   TIGR00459 427 flwvvdfPl.yekd.eekrlvaahhpFtspkeedleklekapeealaeayDlvl.nGvelGgGsiRihdkelqekvfeilgideeearekFgflleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFPktakaa 561
                 ++w +d P  +e+   ek +     +   pk+ ++  ++ ++++ +  a D+ +    e+ gGs R h  ++ ++  e +g+d+     +  + l+   yG+ phaG++lG++Rl++++++ ++iRdvi FP+  + a
  MMETSP1061-20121228|1994_1 430 PVWGIDLPSeHERYlCEKVYKKPVVLMDYPKDIKAFYMKLNEDQKTVAAADILVpKIGEIIGGSQREHRMDVLKTRCEEMGLDPR----QVWWYLDLRRYGTVPHAGFGLGFERLILFVTGLQNIRDVIPFPRYPQNA 563
                 6777777741444455666666666677788777766666655555556665551556**************************9....68899**************************************977665 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00019      0.11      45     200 ..      45     213 ..      26     229 .. 0.64
   2 !   18.0   0.0   3.2e-07   0.00019     240     353 ..     316     427 ..     313     482 .. 0.64
   3 !   28.2   0.0   2.7e-10   1.6e-07     452     491 ..     519     558 ..     503     562 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00019
   TIGR00499  45 kneeleekelevsiaGRikakR..smgkatFitlqdes..gklqlyvnkdklsedveeleeklldlGDiigvkGkl..kktktgelsvkveelklltkal....r..plPekfhGlkdqEtryrkRylDliv....nkesrqtflkRskiikaiRkfldergflEvEtPilq 200
                 kn+  +  ++++++aG   + R   +g++ F++l+d s   ++q +++ +  +e+++e + +   +G   ++ G+l  +++  + + ++v++ kll  +     +   +   f+ ++ + +   + + D        +     +++R  +  a  +f++++gfl + tPil 
  MMETSP1061-20121228|1994_1  45 KNDGAQYLNQTITVAGWARTTRnaNKGQLLFVELNDGStgESIQCVLDSE-KCEGFAECKASG-GTGASFQMVGTLipSQGAGQAVELAVTTGKLLGAVYggnlQgtEVGGAFYAMSKKAH-TLEHMRDHAHlrprGRVHAAAMRIRHCMAYATHNFFHNHGFLYIHTPILT 213
                 455556679999****99999966677899******99444788877665.589999998888.899999999998667777778888888888876654111111112223333322221.11223332220000122334556666666677777777777777777776 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 3.2e-07
   TIGR00499 240 lekvyEigrvFRnEGvdt.tHnpEFttiElYqayadyedllelteellktlvkellgtlki..............kykeeeldlkkpvkkitmleaikkidketgislddlkdsetakalakklaieva 353
                 l  vy  g +FR E   t +H +EF +iE    +ad++d ++l+e+ lk+ v+  l++++                 +  ++ l++p+k++t++eai+                  ++++ k+ ++  +
  MMETSP1061-20121228|1994_1 316 LSDVYTFGPTFRAENSHTgRHLAEFWMIEPEICFADLTDDINLAEDYLKYCVQFALENCQEdleffensphgevgLRDRLKNVLDNPFKRLTYTEAIE-----------------VLQKAVKEDGVVFE 427
                 678***********877659****************************99998777666553444555555544322333333444555555555554.................33333333333343 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 2.7e-10
   TIGR00499 452 fvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFpa 491
                 +++  +yG +p +G+G+G +Rl++++t  ++irdv++Fp 
  MMETSP1061-20121228|1994_1 519 YLDLRRYGTVPHAGFGLGFERLILFVTGLQNIRDVIPFPR 558
                 556668********************************96 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.11        66       4      31 ..     188     215 ..     185     221 .. 0.82
   2 !   22.5   0.0   2.4e-08   1.4e-05      74     304 .]     317     556 ..     312     556 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.11
   TIGR00462   4 rakllaaiRafFaergvlEvetpllsea 31 
                 r+ ++ a  +fF+++g+l + tp+l+ a
  MMETSP1061-20121228|1994_1 188 RHCMAYATHNFFHNHGFLYIHTPILTGA 215
                 5566677889**************9865 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2.4e-08
   TIGR00462  74 gkifqlakvfRneer.grlHnpEFtmLEwYrvgadleelmeeveellqevle............deeaeverlsyaeaferylgidpltasleelkeaaekageaaseeedredlldlllvekvepklgke...rptflydyPasqaaL.arikkddervAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieevlaf 304
                 ++++ ++ +fR e++   +H  EF m+E     adl++ ++  e+ l+ +++             e+++  ++  ++ ++++l+    + + +e  e+++ka ++     ++e ++ + l ++ e+ l ++   +p++l+dyP++  a   ++++d++ vA+  ++ +  +       E++  +++++R++  +++ +++gl+  ++   +l+  + g  + +G  lG++RL+++++g ++i++v+ f
  MMETSP1061-20121228|1994_1 317 SDVYTFGPTFRAENShTGRHLAEFWMIEPEICFADLTDDINLAEDYLKYCVQfalencqedlefFENSPHGEVGLRDRLKNVLDNPFKRLTYTEAIEVLQKAVKEDGVVFEEEPVWGIDLPSEHERYLCEKvykKPVVLMDYPKDIKAFyMKLNEDQKTVAA-ADILVPKI------GEIIGGSQREHRMDVLKTRCEEMGLDPRQVW-WYLDLRRYGTVPHAGFGLGFERLILFVTGLQNIRDVIPF 556
                 689********9987588**********8777777777777777888888888899******9977888888888888888888776666555555555555544444455555555555556666665433338********9865551667766666765.56666555......7899999999999999999999999998885.5678888888889***********************986 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.029        17      36      53 ..     196     213 ..     166     221 .. 0.88
   2 ?    2.1   0.0     0.036        21     107     131 ..     319     344 ..     316     375 .. 0.83
   3 !    5.5   0.0    0.0035       2.1     202     227 ..     527     552 ..     504     559 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.029
   TIGR02367  36 akalvdrGfvevkspili 53 
                  ++++++Gf+ +++pil 
  MMETSP1061-20121228|1994_1 196 HNFFHNHGFLYIHTPILT 213
                 579*************96 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.036
   TIGR02367 107 ifeiGscyrke.sdGsehleeftmln 131
                 ++  G+ +r e s+  +hl ef m++
  MMETSP1061-20121228|1994_1 319 VYTFGPTFRAEnSHTGRHLAEFWMIE 344
                 6788*****87477889*******85 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0035
   TIGR02367 202 vkpwvGlGfGlerllkvredtknvrs 227
                 + p  G G+G+erl+    + +n+r 
  MMETSP1061-20121228|1994_1 527 TVPHAGFGLGFERLILFVTGLQNIRD 552
                 56999*******************97 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.037        22      13      41 ..     184     212 ..     177     220 .. 0.86
   2 !    4.8   0.0    0.0043       2.5     100     126 ..     319     346 ..     299     360 .. 0.85
   3 ?    2.2   0.0     0.027        16     296     317 ..     528     549 ..     523     555 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.037
   TIGR00442  13 eaekrqkveetirevfesygfeeietPil 41 
                  +++r+ +  + ++ f+++gf  i tPil
  MMETSP1061-20121228|1994_1 184 AMRIRHCMAYATHNFFHNHGFLYIHTPIL 212
                 67778888889999*************98 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0043
   TIGR00442 100 lyyigpvFRyErpqkGR.yRqFhQldve 126
                 +y++gp FR+E+   GR + +F+ ++ e
  MMETSP1061-20121228|1994_1 319 VYTFGPTFRAENSHTGRhLAEFWMIEPE 346
                 79***************44678766665 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.027
   TIGR00442 296 vpavGfaiGieRllllleeegl 317
                 vp  Gf++G+eRl+l +  +++
  MMETSP1061-20121228|1994_1 528 VPHAGFGLGFERLILFVTGLQN 549
                 7889**********99876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.30
# Mc/sec: 2485.79
//
Query:       MMETSP1061-20121228|1997_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15    8.0   9.2       0.22    7.4   6.4    1.2  1  TIGR00993 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
       0.46    6.5   6.8       0.45    6.6   4.7    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        9.6    3.1  12.4         14    2.6   8.6    1.2  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR00993  3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   6.4   0.00016      0.22     380     473 ..      50     134 ..      43     162 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00016
   TIGR00993 380 qqggdeedsdieledvsdsdeeegedeydqlppfkslkkaqlaklskeqrkayleeyd.yrvkllqkkqlreelkrmkelkkrgkelgesedgys 473
                 ++  de+d+d   +  sdsd+e+ e+e    pp k  k+      s +q  + le    ++ k  qk + ++++k++k+    g e+ + e+ + 
  MMETSP1061-20121228|1997_1  50 DSSSDESDED---DSNSDSDDEDEEEEEPMKPPAKKQKQ------SAKQSTTKLEAKSkHQTKTKQK-NNNKKKKKKKDKNNGGPEMVNMEFTFC 134
                 4556777777...8999***9998888777777665433......3333333344333022333222.222233333444444555666666554 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.7   0.00033      0.45     187     293 ..      34     117 ..       1     245 [. 0.53

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00033
   TIGR00934 187 qeklfsGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdee 293
                 ++ +++G lv++ + +                         +des+e+ +++++  e+ +++ e+ +  +++ ++s ++   k ea++k + k +++n+ +++++++
  MMETSP1061-20121228|1997_1  34 EDLVLEGVLVRNPDAS----------------------DSSSDESDEDDSNSDSDDED-EEEEEPMKPPAKKQKQSAKQSTTKLEAKSKHQTKTKQKNNNKKKKKKK 117
                 1222222222211111......................11111111111111111111.111111111112222222222222222222222222222111111111 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   8.6      0.01        14      83     156 ..      48     119 ..       3     142 .. 0.53

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.01
   TIGR01347  83 aasekskeekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaa 156
                 a+  +s+e++e+   +++++  e++e++++++p a+k  ++++ ++ ++e ++k++++tk+  ++k++kk++ +
  MMETSP1061-20121228|1997_1  48 ASDSSSDESDED--DSNSDSDDEDEEEEEPMKPPAKKQKQSAKQSTTKLEAKSKHQTKTKQKNNNKKKKKKKDK 119
                 222223333333..222233333333344555555554444444445555444444444433333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       352  (0.0858118); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 1507.88
//
Query:       MMETSP1061-20121228|1998_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2439.52
//
Query:       MMETSP1061-20121228|2000_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0078   12.6   0.3     0.0092   12.4   0.2    1.0  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2   2.2e-06    0.0092     238     308 ..      20      94 ..      11     104 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.2e-06
   TIGR01348 238 aeapakaeaaaaapaaeaeeaaaapaaakaeakapvdantendakvd....haaPavrrlarelGvdlskvkgtg 308
                 a+++a+a+a+a+a+a++ ++ +a+ a++ +++ +p +++++  + +       +P ++ l  elG + +   g+g
  MMETSP1061-20121228|2000_1  20 ASTNANANANANANANTTNTNTASDAGSSSNTDSPSSSSSSSSSSLLttngSISPFLQALMDELGCNRTPSGGAG 94 
                 457788888888888888888888888888888888877777666544556789999999999999876655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 681.06
//
Query:       MMETSP1061-20121228|1995_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-10   37.0   0.4    5.2e-06   23.4   0.0    2.6  3  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    2.3e-09   34.6   0.2    1.2e-07   29.0   0.1    2.3  2  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase
    9.1e-09   32.5   0.1     0.0004   17.2   0.0    2.2  2  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
    2.1e-06   24.7   0.3      0.001   15.8   0.1    2.9  3  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    4.1e-05   20.5   0.3    6.4e-05   19.9   0.2    1.2  1  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    0.00056   16.9   0.0    0.00098   16.1   0.0    1.4  1  TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase
    0.00099   16.0   0.0     0.0016   15.4   0.0    1.2  1  TIGR02092 glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit
     0.0011   16.4   0.0     0.0018   15.7   0.0    1.3  1  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
  ------ inclusion threshold ------
      0.015   13.0   0.0      0.026   12.2   0.0    1.3  1  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
      0.033   10.3   0.0      0.051    9.7   0.0    1.2  1  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
       0.04   10.5   0.0      0.057   10.0   0.0    1.1  1  TIGR01835 HMG-CoA-S_prok: hydroxymethylglutaryl-CoA synthase


Domain annotation for each model (and alignments):
>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.4e-08   5.2e-06       3      76 ..      14      87 ..      12     108 .. 0.76
   2 ?   -1.6   0.0      0.55   2.1e+02      67     112 ..     112     162 ..     104     186 .. 0.67
   3 !   10.6   0.1   0.00011      0.04     268     331 ..     495     557 ..     476     559 .. 0.65

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.4e-08
   TIGR03992  3 avilaAGkGeRlrPlte.trpKvllpvagkpllehliealkeagieelvlvv.gyekekvkeyfgdksklgvevey 76
                av+la  kG+Rl P+t+ + pK llpvag p + +l+e+l ++  +++v+ + +  ++++ + +g++++++ +v+ 
  MMETSP1061-20121228|1995_1 14 AVVLASSKGSRLFPMTTkDIPKHLLPVAGIPSIVRLLESLWAF--SQIVIAIaEDDTKTLPTLLGTNNNTDQTVAS 87
                8**************75268*******************9997..6666655255555666677777777766655 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.55
   TIGR03992  67 ksklgveveyveqeeq.lGtadAlkaakekv....ddeflvlngDvllese 112
                 + k g +++ v+ +e+  G  dAl+ ++e+     + +++v+ gD+++ ++
  MMETSP1061-20121228|1995_1 112 ELKRGQKLHVVKLSEDcYGSIDALRIIEETKlihpETRVVVFPGDLVILKK 162
                 5555666777766554159999999998765566678999999**987433 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00011
   TIGR03992 268 ligknaeiGPnayiRpatvigedvkvgnaveiKnsiimeetkipHlsYvGDSvigedvNlgagt 331
                 ++gk +++G ++ +  + vi+++v++g++  ++n+ii  ++k++    + D  +g ++ + +gt
  MMETSP1061-20121228|1995_1 495 TVGKSCTLGDKCRLN-NVVIMDGVTIGEQCSLQNTIIGYGAKLGNNCSLNDCQVGPGMEIPSGT 557
                 466777777777764.456777777777777777777777777766666666666666666665 PP

>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.02       7.4       2      30 ..      13      42 ..      12      93 .. 0.84
   2 !   29.0   0.1   3.2e-10   1.2e-07     297     362 ..     476     542 ..     464     544 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.02
   TIGR02091  2 lalvLaGGeGsrLspLtkk.rakPavpfgg 30
                 a+vLa  +GsrL p+t+k + k  +p++g
  MMETSP1061-20121228|1995_1 13 CAVVLASSKGSRLFPMTTKdIPKHLLPVAG 42
                689************986515566666666 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 3.2e-10
   TIGR02091 297 dslvaegcvisg.atvenSvlgervriesesevedsvvlgevkigenakikkaiidknvrigegvki 362
                 ++l  egc + +  ++++S +g++ ++++++++++ v+++ v+ige+++++++ii  ++++g++  +
  MMETSP1061-20121228|1995_1 476 QTLTLEGCDLGSkINMKSSTVGKSCTLGDKCRLNNVVIMDGVTIGEQCSLQNTIIGYGAKLGNNCSL 542
                 5677889988654899***********************************************9876 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-06    0.0004       2      74 ..      14      85 ..      13      96 .. 0.84
   2 !   13.0   0.0     2e-05    0.0074     247     303 ..     492     548 ..     477     558 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.1e-06
   TIGR01208  2 alilaaGkGtrlrPltftr.akqlipvankPilqyaiedlveagikdigivvseetkeeikeivgegekfgvki 74
                a++la+ kG+rl P+t    +k+l+pva+ P +   +e+l      +i i ++e  ++++ + +g++++ +  +
  MMETSP1061-20121228|1995_1 14 AVVLASSKGSRLFPMTTKDiPKHLLPVAGIPSIVRLLESLWA--FSQIVIAIAEDDTKTLPTLLGTNNNTDQTV 85
                89*************976449*****************9975..568888888888888888888888777665 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2e-05
   TIGR01208 247 ekskieGrvkveegakivnsvirGPaviGedviiensyigpytsigegvvikdaeve 303
                 ++s +    ++++++++ n vi   + iGe++ ++n+ ig  + +g++  ++d++v 
  MMETSP1061-20121228|1995_1 492 KSSTVGKSCTLGDKCRLNNVVIMDGVTIGEQCSLQNTIIGYGAKLGNNCSLNDCQVG 548
                 4555556678999999*************************************9986 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0071       2.7       3      54 ..      14      68 ..      12     102 .. 0.77
   2 ?    0.4   0.0      0.13        47      70     127 ..     124     186 ..     107     197 .. 0.66
   3 !   15.8   0.1   2.7e-06     0.001     264     317 ..     495     547 ..     467     558 .. 0.53

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0071
   TIGR01173  3 vviLAAGkGtRm....kSklpKvLhelagkpmlehvieaarklsaekivvvlghga 54
                +v+LA  kG R+    + ++pK L ++ag p + + +e+  + s+  ++ +  ++ 
  MMETSP1061-20121228|1995_1 14 AVVLASSKGSRLfpmtTKDIPKHLLPVAGIPSIVRLLESLWAFSQ-IVIAIAEDDT 68
                79*********744334689******************9999888.3344444444 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.13
   TIGR01173  70 lqeeqlgTghAvkqalk.alseeeeevlvlygDvPLisket..leklleskkee..kvtllta 127
                 l e+ +g  +A+    + +l + e++v+v  gD  +++k+t  l +l++  +e+    ++l+ 
  MMETSP1061-20121228|1995_1 124 LSEDCYGSIDALRIIEEtKLIHPETRVVVFPGDLVILKKNTafLDSLIRPASEDvaCTAVLVD 186
                 3455577788877644414557999*************9997778999888776422335544 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 2.7e-06
   TIGR01173 264 eigqdvviepnvilegkvkigedvviGagsvikdsaikenakikaysvleksei 317
                 ++g+ +++  +++l+ +v i ++v+iG+++ +++++i+ +ak+ +++ l+++++
  MMETSP1061-20121228|1995_1 495 TVGKSCTLGDKCRLN-NVVIMDGVTIGEQCSLQNTIIGYGAKLGNNCSLNDCQV 547
                 233333344444433.23444444444444444444444444444444444444 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.2   1.7e-07   6.4e-05     116     169 ..     493     544 ..     478     550 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.7e-07
   TIGR01853 116 nvviganveiGenvkIgpgvvigddvkigdesviyanvviyeevklgknviiqa 169
                   ++g+  ++G+++++  +vvi d+v+ig+++ +  n +i + +klg+n+ ++ 
  MMETSP1061-20121228|1995_1 493 SSTVGKSCTLGDKCRL-NNVVIMDGVTIGEQCSLQ-NTIIGYGAKLGNNCSLND 544
                 4678999999999997.578999999999999986.566777999999998865 PP

>> TIGR01207  rmlA: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.6e-06   0.00098       3      71 ..      15      82 ..      13     113 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.6e-06
   TIGR01207  3 iilaGGsGtrlypit.lavskqllpvydkpmiyyplsvlmlaGirdiliistpedtprfkrllGdGsefG 71
                ++la   G+rl+p+t + + k llpv   p i   l  l      +i+i  + +dt +   llG   +  
  MMETSP1061-20121228|1995_1 15 VVLASSKGSRLFPMTtKDIPKHLLPVAGIPSIVRLLESLW--AFSQIVIAIAEDDTKTLPTLLGTNNNTD 82
                89***********96268***************9999875..6789999999999999999999877655 PP

>> TIGR02092  glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   4.3e-06    0.0016     303     357 ..     491     545 ..     475     556 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 4.3e-06
   TIGR02092 303 vensilsRgvlvekdaliknsiilqeteigegaklekviiDKdvvieeneklagt 357
                 ++ s + ++ ++++   ++n +i+  ++ige++ l++ ii  ++++++n  l+  
  MMETSP1061-20121228|1995_1 491 MKSSTVGKSCTLGDKCRLNNVVIMDGVTIGEQCSLQNTIIGYGAKLGNNCSLNDC 545
                 578999999999********************************99999887755 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.8e-06    0.0018      58     145 ..     457     543 ..     410     556 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.8e-06
   TIGR03570  58 eeedlvvaiGdnkaRkklveklkkkglrfatlih.psaivsksasiGeGvvimagavinadvrigdnviintgavveHdceigdfvhia 145
                 +e d+ v i + ++R+  ++ l  +g+++ + i  +s++v ks+++G+ + + +++vi  +v+ig+++ ++ +++++  +++g++++++
  MMETSP1061-20121228|1995_1 457 SEGDADVRIPKGSKRNGKFQTLTLEGCDLGSKINmKSSTVGKSCTLGDKCRL-NNVVIMDGVTIGEQCSLQ-NTIIGYGAKLGNNCSLN 543
                 5566667788999999***********9987665268899*******98875.688888999999999875.67888888888888774 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0     7e-05     0.026      14      70 ..     488     544 ..     478     556 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7e-05
   TIGR03308  14 saelkesklGrytevgertrleevalddysyvereadiayttiGkfvsiaasvrina 70 
                  +++k s++G+ + +g+++rl++v + d   + +++ +++t iG  +++ +++ +n 
  MMETSP1061-20121228|1995_1 488 KINMKSSTVGKSCTLGDKCRLNNVVIMDGVTIGEQCSLQNTIIGYGAKLGNNCSLND 544
                 678999**************************************9999988887775 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00014     0.051     623     694 ..     494     563 ..     482     565 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00014
   TIGR02353 623 stlnegsvlQtHlfedrvlkvdtvtigdgatlgpsaivlygavvgedavlgpdslvMkgeevpahtrWeGnP 694
                 st+++ ++l      + v+ +d vtig+ + l  ++i+ yga +g++  l++   v  g e+p  t+ +G P
  MMETSP1061-20121228|1995_1 494 STVGKSCTLGDKCRLNNVVIMDGVTIGEQCSLQ-NTIIGYGAKLGNNCSLND-CQVGPGMEIPSGTKEKGEP 563
                 566666666666666677778888888888884.568888888888888865.4577788888888777777 PP

>> TIGR01835  HMG-CoA-S_prok: hydroxymethylglutaryl-CoA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00015     0.057      71     139 ..      87     158 ..      57     166 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00015
   TIGR01835  71 ivlvatEsgiDqskaaavyvhrl....lglspiarsvelkeACygAtaalqlakshvarspdkkvlviasDia 139
                  ++     g  qsk++a  +       l+      +v+l e Cyg   al+++ +    +p+ +v+v+  D+ 
  MMETSP1061-20121228|1995_1  87 SLV-KGPPGTQQSKTTATTLCWElkseLKRGQKLHVVKLSEDCYGSIDALRIIEETKLIHPETRVVVFPGDLV 158
                 433.3456788999998877655000045555666*********************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 2061.88
//
Query:       MMETSP1061-20121228|2002_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-07   29.5   0.9    1.1e-07   29.4   0.3    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.3   2.7e-11   1.1e-07      37     101 ..      31      92 ..      25      95 .] 0.73

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 2.7e-11
   TIGR02349  37 keaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffg 101
                 +e++++f +i+eAye L+de kr+ YD f +   + +  ++++++eg  +     +++ f+ +f+
  MMETSP1061-20121228|2002_1  31 EESNARFAKIAEAYEFLTDETKRKDYDLFLEYCQNTEIVKDNEENEGRLS---TILKKRFGGLFD 92 
                 57899*************************99999987775555555433...223333433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|2008_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.18
# Mc/sec: 1041.25
//
Query:       MMETSP1061-20121228|1999_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       420  (0.102389); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 1643.58
//
Query:       MMETSP1061-20121228|2009_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|2006_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-83  276.3  24.4    1.4e-44  150.7   4.3    3.0  3  TIGR00601 rad23: UV excision repair protein Rad23
  ------ inclusion threshold ------
      0.016   13.0   1.4      0.073   10.9   0.0    2.2  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   4.3   6.7e-48   1.4e-44       1     201 [.       1     203 [.       1     216 [. 0.84
   2 !   76.6   2.1   2.1e-25   4.4e-22     239     320 ..     214     297 ..     202     314 .. 0.78
   3 !   61.5   0.5   8.8e-21   1.8e-17     248     379 ..     315     448 ..     290     449 .. 0.78

  Alignments for each domain:
  == domain 1    score: 150.7 bits;  conditional E-value: 6.7e-48
   TIGR00601   1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptp.satpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdre...tlvvGse.reetveeimemGyereeverAlRAafnnPdRAveYLltGiPedle 201
                 +klt+Ktlk++kf+id ep +tv+e+K  ies ++   ++ +++kLi++GkiL++++tv+ ++ik +df+vvm+sk+K   aka +Pa++p+ a ++   ++ +a++a++++  P+s+  ++++ae e+ a+++   +tsa++++++ +    t   G     ++v+ +  mG+   ev   lRAa+ nPd Ave+L  GiP  l+
  MMETSP1061-20121228|2006_1   1 MKLTVKTLKGSKFEIDCEPTNTVLEVKGVIESTQS--DMPASNMKLIHSGKILKNESTVEGCGIKPNDFMVVMLSKAKKAAAKAPAPAPAPAPAENTEDaKPAAAAPAPDTEMKPSSSDDDKKPAEAESSAPSTD-AATSAPAPAPAAATseaTSDEGPAlSSDVVNSLTAMGFPEPEVRHCLRAAHGNPDIAVEFLTNGIPPGLQ 203
                 89*********************************..89***************************************9998888888888777666665678889999************99999988888754.44555555555554223444555514678999*********************************97665 PP

  == domain 2    score: 76.6 bits;  conditional E-value: 2.1e-25
   TIGR00601 239 ateaasGedpleflrnqpqfqqlRqvvqqnPelLealLqqigkenPqLlqqisqhqEeFlqllnEpveelegesdlveg..tGe 320
                  ++  +G+++l  lrn+pqf  lRq+vq nP++L+ +L qig+++P+Ll +i+++qE+Flq++nEp+ e +  s   +   tG+
  MMETSP1061-20121228|2006_1 214 SSSGGGGGGTLAALRNHPQFNALRQLVQSNPAMLQQVLTQIGQQQPELLAEINANQEAFLQMMNEPITETSAPSSGSSSsnTGS 297
                 3334458999*********************************************************99444333333222333 PP

  == domain 3    score: 61.5 bits;  conditional E-value: 8.8e-21
   TIGR00601 248 pleflrnqpqfqqlRqvvqq.nPelLealLqqigkenPqLlqqisq....hqEeFlqllnEpveelegesdlvegtGeiaeaglgqieqiqvtpeekeaieRLkalGFdrdlviqaylACdknEelAanyLleqnad 379
                 p +++  + +  q+ q++q+  P+ L+ +   +g    qL+   +      +E+  q +  ++++ +g+++l +  G+ +  g +q+  + +t+ee  a++RL ++GFdr    qaylACdknE lAan+L++   d
  MMETSP1061-20121228|2006_1 315 PPGMMEGMADPAQMAQLIQNmSPDELNQMATMMGLSAEQLRSTAQMlgqiPPEQLQQYMMQAMQG-GGAGGLGGMMGGGGGGGGPQV--LRLTEEEMAAVNRLADMGFDRTEAAQAYLACDKNEALAANLLMDSMGD 448
                 4455666777789999999647*********9999999998655431112589999999999999.777777777777777777885..9*****************************************998766 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.5e-05     0.073      28     163 ..      50     182 ..      42     212 .. 0.51
   2 ?    0.7   0.3     0.045        93      42     111 ..     256     337 ..     224     383 .. 0.42

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.5e-05
   TIGR03499  28 Ilstrkvrkgglfskkkvevvaaideee..............sasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselaleeedperakllkklleagvseelarellek 163
                 Il+++++ +g  ++ + + vv+  + ++              +                ++++++++a++ + ++++  +++++ + +++ ++e+++ +  + ++a   +  + +se++++e +   +++++ l+++g+ e  +r+ l+ 
  MMETSP1061-20121228|2006_1  50 ILKNESTVEGCGIKPNDFMVVMLSKAKKaaakapapapapapA----------------ENTEDAKPAAA-APAPDTEMKPSSSDDDKKPAEAESSAPSTDAATSAPAPAPAAATSEATSDEGPALSSDVVNSLTAMGFPEPEVRHCLRA 182
                 8999999999555666677777777776333333333322221................22222222221.1222222222222222222222223333333344444444444444333556666666666666666666666665555 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.045
   TIGR03499  42 kkkvevvaaideeesasaaseeeeakkaleeaepkklskaeekeek.ekeaeekaaeaaqeaekkleeae..........................e 111
                 +++ e++a i+ ++   +a  +  +++ +e+++p++ s++++  ++ +++++  a +            +                           
  MMETSP1061-20121228|2006_1 256 QQQPELLAEINANQ---EAFLQMMNEPITETSAPSSGSSSSNTGSEsQSSSSGDAGA------------AvpgippgmmegmadpaqmaqliqnmsP 337
                 44455555555555...2222222222222222222222222211101111111111............0222222222223334222223332221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1396.15
//
Query:       MMETSP1061-20121228|2010_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1061-20121228|2011_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.22
# Mc/sec: 671.94
//
Query:       MMETSP1061-20121228|2013_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.09s 00:00:00.19 Elapsed: 00:00:00.18
# Mc/sec: 410.63
//
Query:       MMETSP1061-20121228|2016_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 316.77
//
Query:       MMETSP1061-20121228|2018_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       888  (0.21648); expected 82.0 (0.02)
Passed bias filter:                      266  (0.0648464); expected 82.0 (0.02)
Passed Vit filter:                        52  (0.0126767); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.21s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 333.85
//
Query:       MMETSP1061-20121228|2025_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-08   29.8   0.6    4.6e-08   29.6   0.4    1.0  1  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
     0.0081   13.3   0.5      0.011   12.8   0.4    1.1  1  TIGR00599 rad18: DNA repair protein rad18
  ------ inclusion threshold ------
      0.025   11.6   2.4      0.028   11.5   1.7    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.4   3.3e-11   4.6e-08     524     582 ..      28      87 ..      10      89 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 3.3e-11
   TIGR00578 524 agegsaskkpkvelsee.elreevkkGtlgkltvsvlkdickaeGlrsgskkqelldalk 582
                 a  ++a+ k+k+e++ e + ++e +  +l+ ltv +lk+  +aeGlr g+ k+el+d l 
  MMETSP1061-20121228|2025_1  28 AARTQAKAKTKTETKTEtKTKTEPSSDRLSALTVVALKEKLRAEGLRVGGNKAELIDRLA 87 
                 344455667788877665899************************************875 PP

>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.4   8.2e-06     0.011     209     296 ..       6      86 ..       2      91 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.2e-06
   TIGR00599 209 sagasktkPieskdssksssrlsfktvdksstgetsrvdkyldelmskereRLPklnysllkdsklrkkLselGlstnGsrqllqkRh 296
                 ++++s + P+++ d++++ + +  +t+ k++t+  ++++   +  +s   +RL +l     +  +l++kL+  Gl   G+++ l+ R 
  MMETSP1061-20121228|2025_1   6 KSSVSVSVPVSKDDEPETVATVAARTQAKAKTKTETKTETKTKTEPS--SDRLSAL-----TVVALKEKLRAEGLRVGGNKAELIDRL 86 
                 34489999**9999999999999999999999986666666655554..4577665.....5567899**************999886 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.7     2e-05     0.028      96     167 ..       3      89 ..       1      92 [. 0.60

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2e-05
   TIGR00601  96 tptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdre...............tlvvGsereetveeimem 167
                 + t+s+  +sv+ +k + P + ++    ++ +a++ ++++++t++++e +sdr                +l vG ++ e ++++ + 
  MMETSP1061-20121228|2025_1   3 SETKSSVSVSVPVSKDDEPETVATVAARTQAKAKTKTETKTETKTKTEPSSDRLsaltvvalkeklraeGLRVGGNKAELIDRLASA 89 
                 455566667777777777766666666666666666666666666666666665555555555555555777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 511.46
//
Query:       MMETSP1061-20121228|2026_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-08   30.6   0.0    1.2e-05   22.9   0.0    2.3  2  TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
    6.2e-05   19.8   0.3    0.00027   17.7   0.2    1.8  1  TIGR01330 bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
     0.0056   14.0   0.0      0.078   10.3   0.0    2.4  2  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN


Domain annotation for each model (and alignments):
>> TIGR01331  bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0022         3      22      71 ..     186     235 ..     167     240 .. 0.85
   2 !   22.9   0.0   8.6e-09   1.2e-05      80     120 ..     297     340 ..     291     355 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0022
   TIGR01331  22 kelaveekeDesPvteADlaaeklilekLraltPdiPvlsEEeaeiglke 71 
                 ++++ ++k+D+s  t AD  +++l++e          ++ EE++ ++l +
  MMETSP1061-20121228|2026_1 186 TKTKTKTKADDSVFTIADGLVQHLLTETFLGRDVVGDIVGEEDCPVNLST 235
                 5677899********************98665555668999999887765 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 8.6e-09
   TIGR01331  80 LvDPlDGtkeFikrnge.FtvniaLv..eegkPvlGvvyaPvlg 120
                  vDP+DGt+eF  ++ge  ++ ++    + g+Pv+Gvvy P+++
  MMETSP1061-20121228|2026_1 297 FVDPIDGTREFSTQKGEqCSICVGFSdsKTGRPVAGVVYRPLSE 340
                 59*********999986256667765216799*********986 PP

>> TIGR01330  bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.2     2e-07   0.00027      29     171 ..     183     334 ..     158     340 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2e-07
   TIGR01330  29 kek.aadvkskdDksPvtvaDygaqaivilvlkeefpddkl.sivaeedse.tLseddsaqvlgrvselvnetlaeaknykkdelvklksaeellkiidrgn..seGGrkGrh....WvLDPiDGtkGfl..rGdqyavaLaLi..enGkvvlgvl 171
                 k+k  +++k+k D+s  t+aD  +q ++   +   ++ d +  iv+eed   +Ls  +  +v + +     e++      +     + +  e +    d  n   + G    h      +DPiDGt+ f   +G+q ++++++   + G++v gv+
  MMETSP1061-20121228|2026_1 183 KTKtKTKTKTKADDSVFTIADGLVQHLLTETF---LGRDVVgDIVGEEDCPvNLST-KPYTVDDLIVPSEFEAIIDSATEGVAAAREALLRERITDKNDNNNnnNDSGVSALHpsltAFVDPIDGTREFStqKGEQCSICVGFSdsKTGRPVAGVV 334
                 44447889*************88887665443...333333249*****9725666.455565555555555555544444444445555555554444332113344444441111346*********5448*******9985224577777776 PP

>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.042        57      22      65 ..     185     228 ..     165     239 .. 0.76
   2 !   10.3   0.0   5.7e-05     0.078      68     116 ..     288     339 ..     253     355 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.042
   TIGR02067  22 asdlkvdkksdktpVteADraaEeaireliaakfPddgilGEEf 65 
                 ++++k+++k+d++  t+AD  + +++ e+   +    +i+GEE 
  MMETSP1061-20121228|2026_1 185 KTKTKTKTKADDSVFTIADGLVQHLLTETFLGRDVVGDIVGEED 228
                 34456667777788899999999998888888877888888885 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 5.7e-05
   TIGR02067  68 eeedaeyvWvlDPiDGTksFirGvP.vwgtLiaLle..kgkpvlGvisqPal 116
                 ++ + + +  +DPiDGT+ F +      +  ++  +   g+pv+Gv++ P+ 
  MMETSP1061-20121228|2026_1 288 SALHPSLTAFVDPIDGTREFSTQKGeQCSICVGFSDskTGRPVAGVVYRPLS 339
                 55556667789*********87554134556777651145688888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1575.07
//
Query:       MMETSP1061-20121228|2023_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-22   76.9   0.2    3.2e-22   76.5   0.1    1.1  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
      4e-21   73.1   1.4    2.9e-18   63.7   0.1    2.1  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
      7e-21   71.4   0.5    8.3e-11   38.1   0.0    2.0  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.2e-11   41.4   0.0    2.4e-05   20.6   0.0    2.0  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    4.8e-10   36.9   2.0    2.8e-09   34.4   1.4    1.9  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    7.5e-08   29.3   0.9    8.7e-05   19.2   0.0    2.1  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    6.1e-06   22.6   1.3    8.4e-06   22.2   0.1    1.7  2  TIGR00580 mfd: transcription-repair coupling factor
    7.6e-06   22.2   0.0    1.1e-05   21.6   0.0    1.3  1  TIGR00631 uvrb: excinuclease ABC subunit B
    2.8e-05   21.1   0.2      0.084    9.7   0.0    2.1  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0012   15.0   0.3      0.045    9.8   0.1    2.2  2  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
  ------ inclusion threshold ------
      0.014   12.3   0.4      0.058   10.3   0.1    1.9  2  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.1   8.6e-25   3.2e-22      10     332 ..      69     397 ..      58     409 .. 0.76

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 8.6e-25
   TIGR01389  10 GyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaLllkgltv.visPLi.......sLmkDq.vdqL.raaGveaaalnstlsakeaqeilkalaagelklLYvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkap.vialtatadaevredivekLelkdaaefvssfdRenl..afsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeai..llyseaD 332
                 G+e   + qee i  +l++r+vla    G Gk   Y +P L + ++   +i  Li       +L     v+++ +++Gv+  +   ++s k   +i++  +   ++++  +P r++    +++ + ++++ + +Dea  +     +F p  ++++++ ++   +  +  + at  ++v++  ++ +  + + ++++ +  + +  ++  v++++k + l +  +k + +  ii+++s ++ve la+++++ g++    ha ++++ R++  ++F +  ++ +v    F  Gid   v  vi +d Pkn e+y    GR+GR G+   a+  + y+ +D
  MMETSP1061-20121228|2023_1  69 GFERPSPIQEEAIPIILQDRNVLARAKNGTGKTAAYIIPCLEKTDTDAkIIQVLIliptrelALQTSAiVKEMgKHMGVQCMVTTGGTSLK--DDIMRLYN--TVHIVVATPGRILDLASKKVADLSNVKTIVMDEADKLL--SPEFQPVLEQIINFCDK---DHqICLFSATFPVTVKDFCRRFVPNAYSINLMDELTLRGItqFYAYVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCYYIHAKMQQANRNRVFHEFRNGATRHLVTSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAVnlITYDDKD 397
                 78888899*********************************98876431444444112211133322213333356777776666666654..57777665..47778899**************************9763..35677776666666554...44244456666666666666655555555666666655552257788888888888888888777999********************************************************************************************976665115555555 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1   0.00043      0.16       9     104 ..      70     165 ..      63     205 .. 0.68
   2 !   63.7   0.1   7.8e-21   2.9e-18     216     341 ..     277     402 ..     259     411 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00043
   TIGR00614   9 lesfrpvqlevinavlegrdalvvmatGgGksLCyqlpavvsdgltlvisPLisLmeDqvlqLkasdisatlLnsaqskeeakevladlkdgklkl 104
                 +e+  p q+e+i  +l++r++l     G Gk   y +p +        i  +  L+    l L++s i   + +    +  +++  + lkd +++l
  MMETSP1061-20121228|2023_1  70 FERPSPIQEEAIPIILQDRNVLARAKNGTGKTAAYIIPCLEKTDTDAKIIQVLILIPTRELALQTSAIVKEMGKHMGVQCMVTTGGTSLKDDIMRL 165
                 5566799********************************998888777777777888888888888777776665555555555556666666664 PP

  == domain 2    score: 63.7 bits;  conditional E-value: 7.8e-21
   TIGR00614 216 llkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrl 341
                 +l+ +  + + +  ii+C+s ++ve +a++++++g ++   ha +++++r++v ++f +   + +v    f  Gi+   v  vi ++ pk+ e+Y   +GR+GR g    +v + ++ D   lrr+
  MMETSP1061-20121228|2023_1 277 CLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCYYIHAKMQQANRNRVFHEFRNGATRHLVTSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAVNLITYDDKDNLRRI 402
                 44445556677777*************************************************************************************************999999999988887 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   2.2e-13   8.3e-11      13     154 ..      72     206 ..      62     210 .. 0.90
   2 !   31.7   0.0     2e-11   7.5e-09     246     344 ..     286     379 ..     272     389 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 2.2e-13
   TIGR04121  13 eprafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlg 154
                 +p + Q+e++  + ++++ l  a  G+GKT a  +p l ++    ++ k ++vl + P + La +++  ++++ +++g+++ v   tG ts ++   +  ++ +i++ Tp  +  l s+k a   +++++++v+DE  +Ll+
  MMETSP1061-20121228|2023_1  72 RPSPIQEEAIPIILQDRNVLARAKNGTGKTAAYIIPCLEKTD---TDAKIIQVLILIPTRELALQTSAIVKEMGKHMGVQCMVT--TGGTSLKDDIMRLYNTVHIVVATPGRILDLASKKVA--DLSNVKTIVMDEADKLLS 206
                 47899*********************************9988...77889**********************999999999885..8************************99777666655..489*********999975 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 2e-11
   TIGR04121 246 kkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsn 344
                 +  +++++F+N  ++ Ell ++++e+           H+ +++++R++v +++++g  r +v+   +  G+D + v+ vi+   pk+    l RiGRs+
  MMETSP1061-20121228|2023_1 286 EI-NQSIIFCNSVNRVELLAKKITELGYS----CYYIHAKMQQANRNRVFHEFRNGATRHLVTSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSG 379
                 44.4679**********998888877666....5667*************************999999*****************************97 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   6.4e-08   2.4e-05      23     138 ..      59     177 ..      43     205 .. 0.76
   2 !   18.8   0.0   2.2e-07   8.2e-05     314     386 ..     322     395 ..     290     400 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 6.4e-08
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedpr.atalylaPtkalaadqlravkelee.rdvraatydGdtpaee.rewirekaryvltnPd 138
                  ++   + ++G e+p   q +a  +  + ++v   +   +Gk+ ay +P l+++ +d +  ++l l Pt+ la    + vke+ +  +v+  +  G t+ +     + ++ ++v++ P 
  MMETSP1061-20121228|2023_1  59 RELLMGIFEKGFERPSPIQEEAIPIILQDRNVLARAKNGTGKTAAYIIPCLEKTDTDAKiIQVLILIPTRELALQTSAIVKEMGKhMGVQCMVTTGGTSLKDdIMRLYNTVHIVVATPG 177
                 5666667789999*******************99999*****************999652689********************875789988888877654303334455556666664 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.2e-07
   TIGR03817 314 laedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvv.lvardd 386
                  + +r ++ +++++G  + +++ + +  G+di  ++ v+   fP    ++  ++Gr+Gr g+  l+v l++ dd
  MMETSP1061-20121228|2023_1 322 QQANRNRVFHEFRNGATRHLVTSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAVnLITYDD 395
                 4568999999*****************************************************99984555555 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   1.4   7.5e-12   2.8e-09     113     320 ..     180     382 ..      89     398 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 7.5e-12
   TIGR01587 113 vgeaeitlasianS.vliiDEvhayeeytkalllallevlkdvdvkillmsAtlpkllkeylekielveenealdlkeekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDi.svdvlitelapids..LiQRlGRlaRyg 320
                 ++ a ++ a ++n   +++DE++ + +   + +l  +  + d+d +i l sAt+p  +k + +   +      l  +e     + ++     +  ++++ l+ l     + ++ +i++N+V+r   l +k+ e +       +H+++++ +r++      +e+++ + + +v+  +   ++Di sv+v+i    p +s     R+GR  R+g
  MMETSP1061-20121228|2023_1 180 LDLASKKVADLSNVkTIVMDEADKLLSPEFQPVLEQIINFCDKDHQICLFSATFPVTVKDFCRRFVPNAYSINLM-DELTLRGITQFYA-YVEERQKVHCLNTLFS-KLEINQSIIFCNSVNRVELLAKKITELGYS--CYYIHAKMQQANRNRV----FHEFRNGATRHLVTSDLFTRGIDIqSVNVVINFDFPKNSetYLHRIGRSGRFG 382
                 444455555555532699****9988877777777777889**************88888887776665444444.3333334556533.4445667888885555.45678889********************98..99*******9999765....9***********************779****9999987633678999999986 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.2   0.00036      0.14     265     365 ..      96     200 ..      77     205 .. 0.73
   2 !   19.2   0.0   2.3e-07   8.7e-05     473     570 ..     300     398 ..     263     407 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00036
   TIGR00643 265 VGsGKTvVavlallaviesGy...qvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqe....kv.efkeLalviiDE 365
                  G+GKT   ++ +l+  ++     qv++++PT  LA Q    ++e+ +++g++  + tg +  k+    +  +   ++++vv T   + +    kv ++++++ +++DE
  MMETSP1061-20121228|2023_1  96 NGTGKTAAYIIPCLEKTDTDAkiiQVLILIPTRELALQTSAIVKEMGKHMGVQCMVTTGGTSLKDDI--MR-LY-NTVHIVVATPGRILDlaskKVaDLSNVKTIVMDE 200
                 69************998765323399************************99999999987765433..22.22.2567888876544321111333677777777777 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 2.3e-07
   TIGR00643 473 leelkkaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLvaepkseea 570
                 +e l k++    +++  +h++++++++++v++eFr++ +  Lv+  +   G+d+  ++v++  d  +   + LH + GR gR  + + ++ + +  ++++
  MMETSP1061-20121228|2023_1 300 VELLAKKIteLGYSCYYIHAKMQQANRNRVFHEFRNGATRHLVTSDLFTRGIDIQSVNVVINFDFPKNSETYLHRI-GRSGRFGHLGLAVNLITYDDKDN 398
                 44444444234588999*******************************************9999999999999976.77777666665554433333333 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.31   1.2e+02     619     732 ..     187     196 ..     114     204 .. 0.62
   2 !   22.2   0.1   2.2e-08   8.4e-06     664     762 ..     293     388 ..     266     404 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.31
   TIGR00580 619 irdlSiiatPPedRlpvktfvkeyddelvkeairrEllRgGqvfyvhnriesieklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTi 732
                 +                                                                                                         d++n+ Ti
  MMETSP1061-20121228|2023_1 187 VA--------------------------------------------------------------------------------------------------------DLSNVKTI 196
                 44........................................................................................................44444444 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 2.2e-08
   TIGR00580 664 vhnriesieklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayay 762
                   n ++ +e l++++ el    +  ++H++m++ + ++v++eF ++++  Lv+  +   Gidi ++N +i  +  k   + L+ + GR GR  + + a 
  MMETSP1061-20121228|2023_1 293 FCNSVNRVELLAKKITEL--GYSCYYIHAKMQQANRNRVFHEFRNGATRHLVTSDLFTRGIDIQSVNVVINFDFPKNSETYLHRI-GRSGRFGHLGLAV 388
                 568888899999999998..567889*******************************************9988888888888876.7777777766664 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0     3e-08   1.1e-05     453     541 ..     297     380 ..     268     400 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3e-08
   TIGR00631 453 kkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraar 541
                     e l++ ++elg    y+h +++  +r ++ +++r+g    lv  +L+  G+D+  v +v  +D     f +++++ +  iGr+ r
  MMETSP1061-20121228|2023_1 297 VNRVELLAKKITELGYSCYYIHAKMQQANRNRVFHEFRNGATRHLVTSDLFTRGIDIQSVNVVINFD-----FPKNSETYLHRIGRSGR 380
                 445688999999***************************************************9998.....66677777777787777 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00023     0.084      26     159 ..      88     218 ..      72     220 .. 0.71
   2 !    9.4   0.0   0.00027       0.1     280     379 ..     289     377 ..     268     383 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00023
   TIGR04095  26 rGilkma.tGtGktltaLa.lvsklaekikslvvvvvvPykhLveqWakeaekFglep.ilayesvsrWqkelsekleelsskakkllliittnatlkeekFqsqlrllkkkllliaDeahnlGakrlkealpdsik 159
                 r +l+ a  GtGkt   ++   +k +  +k + v++++P ++L+ q ++ +++ g +  ++++   +   ++l++ + +l   +++++++++t   + + + + ++  l++ + ++ Dea +l +++++  l + i+
  MMETSP1061-20121228|2023_1  88 RNVLARAkNGTGKTAAYIIpCLEKTDTDAKIIQVLILIPTRELALQTSAIVKEMGKHMgVQCMV--TTGGTSLKDDIMRL---YNTVHIVVATPGRILDLASK-KVADLSNVKTIVMDEADKLLSPEFQPVLEQIIN 218
                 555555427****98876614566688889999**************99999998764366664..44456677777664...55677788887777766544.455666667799999999999999888877665 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00027
   TIGR04095 280 ktlvYcgdgktedekeeeerqidevvkllgeelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGR 379
                 + +++c +           ++++ + k + +elg+++    a+ ++++R+++ ++f +g+   lv+      G+D+ +++  +     +n   ++ R GR
  MMETSP1061-20121228|2023_1 289 QSIIFCNS----------VNRVELLAKKI-TELGYSCYYIHAKMQQANRNRVFHEFRNGATRHLVTSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGR 377
                 44455542..........33444444444.5899***999***************************************999888899999999988888 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   0.00012     0.045     264     317 ..      87     146 ..      76     162 .. 0.68
   2 ?    3.2   0.0     0.012       4.4     720     787 ..     294     360 ..     266     363 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00012
   TIGR01407 264 eekslIeAatGtGKtlgYLLpalylakeekpvv.....iStatkvLQ.sQllekdiplln 317
                  +++l  A  GtGKt +Y++p l  + ++++++     i t    LQ s ++ +  ++++
  MMETSP1061-20121228|2023_1  87 DRNVLARAKNGTGKTAAYIIPCLEKTDTDAKIIqvlilIPTRELALQtSAIVKEMGKHMG 146
                 5689999****************9998776543222224555555662345555555555 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.012
   TIGR01407 720 FTskemlkaVadklkelseeeglevlaQginGsrakilkrFekgekaiLlGassFwEGvDlpgnelki 787
                   s + ++  a+k++el     + + a  ++ +r+++ ++F +g  + L+  + F  G+D+++ +++i
  MMETSP1061-20121228|2023_1 294 CNSVNRVELLAKKITELGY-SCYYIHAKMQQANRNRVFHEFRNGATRHLVTSDLFTRGIDIQSVNVVI 360
                 5566666667777777655.5566667777779*****************************999877 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   0.00016     0.058      17      63 ..      90     142 ..      84     161 .. 0.82
   2 ?   -1.3   0.0      0.52   1.9e+02     142     191 ..     190     233 ..     170     267 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00016
   TIGR03158  17 llntAptGaGKtlaalvevlseeldt.......ialyPtNaLiedqekaikelv 63 
                 +l  A  G+GKt a +++ l++  dt       + l Pt +L+ +    +ke+ 
  MMETSP1061-20121228|2023_1  90 VLARAKNGTGKTAAYIIPCLEKT-DTdakiiqvLILIPTRELALQTSAIVKEMG 142
                 7889**************99876.5556998877789*******9999988886 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.52
   TIGR03158 142 lytkfsvvifDEFHlydakqlasllflldemqlirteecrrklvfLsAtP 191
                 l  +++++++DE      ++ + +l      q+i++ ++ +++ + sAt 
  MMETSP1061-20121228|2023_1 190 L-SNVKTIVMDEADKLLSPEFQPVL-----EQIINFCDKDHQICLFSATF 233
                 3.67889999999999999999999.....47999999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.50
# Mc/sec: 1119.27
//
Query:       MMETSP1061-20121228|2027_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 1116.83
//
Query:       MMETSP1061-20121228|2028_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   14.7   1.6     0.0043   14.6   1.1    1.2  1  TIGR02611 TIGR02611: TIGR02611 family protein
  ------ inclusion threshold ------
      0.027   10.2   0.5      0.028   10.2   0.3    1.0  1  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
       0.19    7.5   3.9       0.18    7.6   1.9    1.5  2  TIGR00921 2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family


Domain annotation for each model (and alignments):
>> TIGR02611  TIGR02611: TIGR02611 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   1.1   3.2e-06    0.0043      26      42 ..       7      23 ..       2      46 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.2e-06
   TIGR02611 26 plvlvvGlvvlvvGiii 42
                ++v+vvG+vv+vvG+++
  MMETSP1061-20121228|2028_1  7 SAVGVVGVVVVVVGVVM 23
                689************97 PP

>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   2.1e-05     0.028     364     399 ..      17      52 .]      10      52 .] 0.90

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.1e-05
   TIGR03480 364 aakevgaalllaalatAigffaFlpTdykGvseLGl 399
                 ++  v +a+++aa+++A gf      + +Gv+eLGl
  MMETSP1061-20121228|2028_1  17 VVVGVVMAISIAAATAAKGFVDLALQELNGVVELGL 52 
                 5667889****************************7 PP

>> TIGR00921  2A067: efflux transporter, putative, hydrophobe/amphiphile efflux-3 (HAE3) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   1.0     0.013        18     213     233 ..       4      24 ..       2      27 .. 0.76
   2 ?    7.6   1.9   0.00013      0.18     288     322 ..      18      52 .]      13      52 .] 0.85

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.013
   TIGR00921 213 fksvvrkllpLvivlfgVvvv 233
                 f+    ++++ v+v++gVv+ 
  MMETSP1061-20121228|2028_1   4 FRCSAVGVVGVVVVVVGVVMA 24 
                 666777889999999999886 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00013
   TIGR00921 288 vkrtgkAvliallttvlGFlalllsvlpmlkelgv 322
                 v     A+ ia++t++ GF+ l+l +l  + elg+
  MMETSP1061-20121228|2028_1  18 VVGVVMAISIAAATAAKGFVDLALQELNGVVELGL 52 
                 5556689*********************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       352  (0.0858118); expected 82.0 (0.02)
Passed bias filter:                      215  (0.0524135); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1061-20121228|2030_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 613.75
//
Query:       MMETSP1061-20121228|2024_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1807.85
//
Query:       MMETSP1061-20121228|2031_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1594.02
//
Query:       MMETSP1061-20121228|2034_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-86  285.6   0.0    7.9e-86  284.5   0.0    1.4  1  TIGR02690 resist_ArsH: arsenical resistance protein ArsH


Domain annotation for each model (and alignments):
>> TIGR02690  resist_ArsH: arsenical resistance protein ArsH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.5   0.0   1.9e-89   7.9e-86      23     219 .]     100     308 ..      89     308 .. 0.94

  Alignments for each domain:
  == domain 1    score: 284.5 bits;  conditional E-value: 1.9e-89
   TIGR02690  23 aehaprilllyGslrersysrllaeeaarllealGaevrifdpkglplpddaeedhpkvqelrelsqwseGqvwvsperhGaltgilksqidwiplalGsvrptqGktlavmqvsgGsqsfnavnqlrilGrwlrmltipnqssvakafkefdea............grmkpssyydrvvdvmeelvkftlllrdradylvdryserke 219
                   ++pril+lyGslr +s+sr  a+e arll+ lG++vr+++p+glp+ d a e+  kv elr+l++ws+G++wvspe+hG++tg++k+qidwipl++GsvrptqGkt  v qv gGsqsfnavn lr+l rw+rm    nqss+aka++ef+++            grmk+ss+++rvvdv+ee+ kft ++ + ++ l+dryserke
  MMETSP1061-20121228|2034_1 100 IGRPPRILVLYGSLRPTSFSRKAAYEFARLLDLLGCDVRVYNPRGLPVRDPALEKELKVVELRALTHWSDGHMWVSPEMHGTITGVFKNQIDWIPLNTGSVRPTQGKTCCVAQVNGGSQSFNAVNALRLLARWMRMPCCTNQSSIAKAWQEFENDddnnndggggggGRMKESSFRERVVDVAEEFAKFTAVMAPLKESLTDRYSERKE 308
                 4679****************************************************************************************************************************************************76433444455544479***************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.60
# Mc/sec: 741.34
//
Query:       MMETSP1061-20121228|2043_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1061-20121228|2044_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 418.92
//
Query:       MMETSP1061-20121228|2036_1  [L=723]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   13.4   0.0      0.011   12.5   0.0    1.3  1  TIGR02128 G6PI_arch: bifunctional phosphoglucose/phosphomannose isomerase


Domain annotation for each model (and alignments):
>> TIGR02128  G6PI_arch: bifunctional phosphoglucose/phosphomannose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.6e-06     0.011     158     209 ..     496     548 ..     480     560 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.6e-06
   TIGR02128 158 edleklkeeakrlaeeiinri.pviysssptraiAeRlKneinENaKipayln 209
                    ++ +e+ ++l+ee+   i + +y  +p + +A+R+ + +nEN K+ +  +
  MMETSP1061-20121228|2036_1 496 TTPQSSEEQLNSLVEELKDIInAPVYEDTPLQDVAKRFWETLNENQKVRSKNE 548
                 55567788889999999995525689999******************988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (723 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 2511.27
//
Query:       MMETSP1061-20121228|2042_1  [L=865]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.8    1.5  79.1       0.11    7.9  27.0    3.1  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  27.0   2.7e-05      0.11     228     506 ..      29     303 ..      23     307 .. 0.77
   2 ?    1.0  13.6    0.0033        13     318     507 ..     247     437 ..     215     464 .. 0.66
   3 ?    3.2   9.3   0.00072         3     699     902 ..     533     742 ..     511     759 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 2.7e-05
   TIGR02169 228 lllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeae....idklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiae.leee.leelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseee 506
                 + +++++++e  +e ++++++e+++ l+  + + +el ++ e++e  ++ ++++ ek +  e++ + +++e+++ ++e+ +r+++e +  le  ++++  + +e    i+ l  +i + +r  +e   +r++  ++  + k+ +++  + l e+ ++ +e+ +++++ +++le +k+e+n+ +      le l++ + ++++++++  +  +++ e  ++e l  ++  i+ +++k+++l++ l++ +     l+++ +++ ++l++  + +aele++ + s+e+
  MMETSP1061-20121228|2042_1  29 VSVEHWHEMECRLEYMQSQVDEAQQALARKHIQQQELVERAEQAEFARQLAERNFEK-ATHEITVLGRRVEDTEEQLEEHKRSLRETKAVLEATQQTEVSLTKEatalIQVLTTTISDGDRMHNELVSKRKEEIDRKTATKHYQANQISLLHELLQNLEEIHKAQQKHRTHLETTKNERNSRE------LEFLEEHSLAVEQMRNDCVAEIQALREsTQNElLPIVQRLIASSNEKMNRLAAILKDGDGC---LQTNCQSILDRLTSNTNRIAELETEYRSSSER 303
                 56789999*********************************9999887666666666.7889999***********************99999999887665551111555566666666666665555555555555555556666677889999999999999999999999999999977......566666667777776665444444433034441455677899999999****999998865...577899999**************999888775 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.0033
   TIGR02169 318 ledaeerlakaeaeidklkeeiee.lereieeekkereklkeelkelkeeleelrael.eevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeele.klekelselerelaeleaqakaseees 507
                 ++++ + +++   ++ ++ ++ +  l+++ ++   + ++ +++++el++e++ + +++ + +d++ ++++e+l+ +  ++ ++ +  +   r+l+r  +  k++   +++ +  ++++ +      + l++   eik  +++++++ +  +++++ l  ++++++ klek+ s l+++ +   a+++  ++ +
  MMETSP1061-20121228|2042_1 247 VQRLIASSNEKMNRLAAILKDGDGcLQTNCQSILDRLTSNTNRIAELETEYRSSSERIlDTLDTQLRASKENLSLAVAEITAALQDAKAN-RQLQRV-DLNKKIVDFRKRSRSSIHEMGSLASSHTTVLKDSVREIKDGQEQRSNILDSISNMDEYLASKNNDYAtKLEKQCSVLKQQHETFLASHQKQQQMN 437
                 444444444444444444444332256666777777788888888888888887776526678888888888888888887766655443.356666.88888888888888888888888888888888888999998888999988888888888888888753788888888888888888775544443 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.00072
   TIGR02169 699 rriekrldelssklsdaekkieeieke.leqleeeeeklkerleeleekl.seleeeleekkeelkeleaeiee..leeklaklkealedleaelseekieeieeelekleeevsriearlee.ieaelnklelekelleeeiqel.qeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrel 902
                 + ie   + l + ++d++  +++ e e l + ++  ek++ ++e   ++l s+++++ e+  +el+e +a+  +  +ee ++ l+++l++  +  +++   + ++el ++ee++   e+++ee + + l+  +  ++ le  ++e   ++i++  ++++e e     l+ + e +  ++      v   +++  +L+++++++++e  ++
  MMETSP1061-20121228|2042_1 533 TAIEGLCKPLDAFVRDSKDALQTHETEdLTATNSIIEKARTQIETATHQLaSSTQQAAEQGMSELQESAAQGWSyvREEVIQPLRNDLAERIQAPQSSVHANAQKELTAIEEKLDCGEKAVEEqVSKGLEYASSAEQCLEVGVNETfAASIKQHRDHIEESEWLETTLQEQNELVGDRVSSSTHLVSSCSKQVDGLAHDVHRVDEEPANI 742
                 456666666777777777777766544155566667888888888877772456667777778888877764331267888999999999999999999999999999999999988888865377778888888888887776651455666667777777777777777777888888888888888888888888888888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (865 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       438  (0.106777); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.13s 00:00:00.76 Elapsed: 00:00:00.55
# Mc/sec: 2075.83
//
Query:       MMETSP1061-20121228|2045_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1115.08
//
Query:       MMETSP1061-20121228|2046_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-25   86.0   0.0    4.5e-18   63.2   0.0    2.5  2  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.2e-08   5.1e-05       2     102 ..     202     304 ..     201     312 .. 0.81
   2 !   63.2   0.0   1.1e-21   4.5e-18     169     360 ..     353     558 ..     321     577 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.2e-08
   TIGR03417   2 rpnililmvdqlagtllpaygpaevlkaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrig.vyd.naaefasdi..ptyahylraaGyktalsGkmh 102
                 r n+ ++ +d  + ++l + ++   +k+Pn++++a++++ f+n+ +++ +c  +r +l +G   +  + ++    a+f+++    t    ++++ y t l Gk h
  MMETSP1061-20121228|2046_1 202 RLNVALFYADDWTMKVLGKLDK--HVKTPNIDEMADNGMLFTNNCVTTSVCWASRSTLATGTYTAVHKhTFPfQDADFETEHweNTLFPLMKNKDYFTGLFGKWH 304
                 66999999*********99666..9************************************98764431332245677776522577777889999999999988 PP

  == domain 2    score: 63.2 bits;  conditional E-value: 1.1e-21
   TIGR03417 169 akqklydlarekdarPfcltvsl..thPhd....PyvirkkywdlyedeeillPevaleleeqdphsk.rll....kaldlkekditeeqirrarrayfaaisyvddkiGellevleetrladdtivvfvsdhGdmlGerGlwykmsffegsarvPllvaaperleagr...veaavstvdllPtlvelagveleevlpaldGesl 360
                  +q+l ++ +++  +Pf lt s+  th  d     y  +++  +    ++   P++++++ee+ ++    l+    +    +++    ++ +++ +  +a  + vd+ +G++++   ++++ ++t+ +f++d G+m Ge+Gl  k   fe+s rvPl+++ p+  + +r    ea + +vdl Pt+ ++a +  +  ++  d ++l
  MMETSP1061-20121228|2046_1 353 NRQRLRKMKKNEGYKPFFLTTSFfaTHARDgefpSYQPTNETRSSVYPDDLVIPKAKTATEEHWNDLPgFLRhdrnEGRTRWKQRFDPSNFQTSIKDMYAMATEVDEAVGAIIQQARNMGVYKETVFIFTTDNGNMHGEHGLAEKWYPFEESLRVPLVIQDPRMPKERRgtiSEAWTLNVDLAPTILAVADIPPSDFMQGRDIADL 558
                 46888889999999********95567666444336666666655555577788887777665444330232101123345677788999**********************************************************************9994444332213455679************998888775554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.59
# Mc/sec: 1581.63
//
Query:       MMETSP1061-20121228|2049_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   35.7   7.5    1.6e-05   22.4   0.1    3.1  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0011       4.6      13      24 ..       8      19 ..       4      20 .. 0.77
   2 !   11.4   0.8   1.1e-05     0.044       1      25 [.      22      45 ..      22      46 .. 0.94
   3 !   22.4   0.1     4e-09   1.6e-05       1      22 [.      47      67 .]      47      67 .] 0.99

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0011
   TIGR02167 13 lSnfdTsnVTnM 24
                l+ +d+s+V  M
  MMETSP1061-20121228|2049_1  8 LECWDVSKVVYM 19
                666******666 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 1.1e-05
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                MF++ +s+++ +l ++ TsnV  M 
  MMETSP1061-20121228|2049_1 22 MFASATSFNQ-PLQSWSTSNVVEME 45
                **********.**********8886 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 4e-09
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVT 22
                MF++ +s+++ +l +++T++VT
  MMETSP1061-20121228|2049_1 47 MFYSATSFNQ-PLGSWNTAKVT 67
                **********.**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 421.11
//
Query:       MMETSP1061-20121228|2051_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   15.3   0.3     0.0041   15.3   0.2    2.4  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
  ------ inclusion threshold ------
        5.2    5.5  12.8      0.024   12.9   2.2    2.2  3  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   1.3      0.15   3.1e+02      20      33 ..      42      55 ..      26      62 .. 0.57
   2 !   15.3   0.2     2e-06    0.0041       5      43 ..      67     105 ..      63     112 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.15
   TIGR02811 20 vgaaagavaaatgr 33
                ++a+a a + at++
  MMETSP1061-20121228|2051_1 42 LAATAKATTKATTK 55
                23333333333333 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 2e-06
   TIGR02811   5 qkadlsRRdLLkglavgaaagavaaatgrvasasaaaep 43 
                 ++ ++sRR +L  +a++a  +a+a+a    a+a+a+a +
  MMETSP1061-20121228|2051_1  67 RHGNPSRRAFLSRAAIVASWSAIALAGAPPAKAAADASE 105
                 5679**************999999988887777666654 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       0.7   1.4e+03      13      21 ..      14      22 ..      12      32 .. 0.64
   2 ?   -3.4   0.1       1.7   3.5e+03      10      18 ..      37      45 ..      35      46 .. 0.60
   3 ?   12.9   2.2   1.2e-05     0.024       2      29 .]      72      99 ..      71      99 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.7
   TIGR01409 13 agaaaglgl 21
                a+a++ +g+
  MMETSP1061-20121228|2051_1 14 AAASLLPGT 22
                556665554 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.7
   TIGR01409 10 aaaagaaag 18
                ++aa +aa+
  MMETSP1061-20121228|2051_1 37 SSAAPLAAT 45
                566666664 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 1.2e-05
   TIGR01409  2 sRRdFLkaaaaagaaaglglllpsparA 29
                sRR FL +aa+++ + +++l+  +pa A
  MMETSP1061-20121228|2051_1 72 SRRAFLSRAAIVASWSAIALAGAPPAKA 99
                9*****************9988889877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 849.01
//
Query:       MMETSP1061-20121228|2048_1  [L=2294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.87u 0.19s 00:00:01.06 Elapsed: 00:00:00.74
# Mc/sec: 4091.66
//
Query:       MMETSP1061-20121228|2052_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2569.07
//
Query:       MMETSP1061-20121228|2055_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   12.1   1.7      0.089   11.1   1.2    1.6  1  TIGR04102 SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family


Domain annotation for each model (and alignments):
>> TIGR04102  SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.2   2.2e-05     0.089      92     108 .]     124     140 ..      85     140 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.2e-05
   TIGR04102  92 ndpCsCGsgkkykkCCa 108
                  +pC+CG g+ y  CC+
  MMETSP1061-20121228|2055_1 124 MEPCPCGGGETYSACCS 140
                 59**************5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1835.85
//
Query:       MMETSP1061-20121228|2053_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1312.13
//
Query:       MMETSP1061-20121228|2056_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2894.33
//
Query:       MMETSP1061-20121228|2057_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 325.57
//
Query:       MMETSP1061-20121228|2060_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|2058_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-08   32.5   0.0      6e-08   30.1   0.0    2.0  1  TIGR03442 TIGR03442: TIGR03442 family protein
    6.7e-08   30.5   0.0    1.5e-07   29.3   0.0    1.6  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    3.1e-05   21.3   0.0    5.7e-05   20.4   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00046   17.5   0.0    0.00066   17.0   0.0    1.2  1  TIGR01134 purF: amidophosphoribosyltransferase
     0.0014   16.0   0.0     0.0024   15.2   0.0    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0014   16.2   0.1     0.0031   15.0   0.0    1.5  2  TIGR00740 TIGR00740: putative methyltransferase
     0.0031   14.8   0.0      0.005   14.2   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0038   13.6   0.0     0.0054   13.1   0.0    1.1  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
     0.0046   13.7   0.0     0.0069   13.1   0.0    1.2  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
      0.006   13.7   0.0      0.022   11.9   0.0    1.8  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0062   13.7   0.0     0.0098   13.0   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.012   12.9   0.1      0.018   12.3   0.1    1.2  1  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
      0.015   12.2   0.0      0.024   11.5   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
      0.037   10.3   0.0      0.058    9.7   0.0    1.2  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR03442  TIGR03442: TIGR03442 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   2.1e-10     6e-08      40     238 ..      31     281 ..      23     287 .. 0.68

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 2.1e-10
   TIGR03442  40 lnADGfGvGwydsekdtvparyrstqPlWaDaslaslara..veskcvlaavRsAtvgqavelsataPFadg....rillsHnGvvdnfret...lyrpl.....r...drlddeeylaiegstDsellfallleelleqkk.kaleevlaevllilak.laaaekar..lnllladGs.rllAtrwad..........................tLyvlkd.............pesvivasEPldddpeWqevPdrsl 238
                 +   G+G+  y+s+     ++++++qP  + +  + +a    +++  ++a +R At g av+l +  PF+ +    ++ + HnG v ++ +       pl     +   +++ d+ + +  g+tDse+ f  +l++l+++ +      +l e+l+ l + l + ++ r  ln ll+ G+ +l+A  w                                  d             +  +++a  Pl  d++W+e+   +l
  MMETSP1061-20121228|2058_1  31 IHSHGWGMAIYESQ---GLRTFHDSQPAADSMIAKFVADHypIQTLNMMAHIRYATQG-AVALENVHPFQRElwgiNWSFCHNGEVPKYSDQksyAEYPLlgrrsQergSNPRDSIFYHPVGTTDSEATFCAILNALRAEFTeLPTLPLLYETLQRLCAqLVEGDEDRtiLNFLLGCGQyTLFAYSWPGsrpgskiwnglhylvrkppfstanltD-----DdyqvdfskctnenDRVAVIATAPLTRDEDWKEFERGQL 281
                 5678**********...99********86555555576544599************99.799********985555689*******99965311222233121112111345567788999***************9987663666678889988775413333333345*******983588988876677777887555555555554444440.....034444444444324455777777777777777766665 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   5.1e-10   1.5e-07      24     134 ..     332     460 ..     320     465 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 5.1e-10
   TIGR02072  24 lellkekr..kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.................nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvl.kpgGllafst 134
                 ++++ +++  +   +++ d+GcG G    a ++ ++++  i +D+s+em   a++++                  ++   c + ++  l+ +sf l++S+ ++  ++dl++v++ +++++  ++G++af+t
  MMETSP1061-20121228|2058_1 332 VDRVLQHQepTPWAKTAADLGCGAGCSGIAFRSCVEHM--IGVDLSPEMVDKARQRNCydelvvgnvecvlrrqpKHLKKCTNPNHGLLASRSFHLVFSCNTFCYIKDLRSVFDDIRQIMiPNDGIFAFTT 460
                 444444444545567899*******8888888888877..**************999999999999999998888777788899999999999************************9761567*****98 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     2e-07   5.7e-05      53     105 ..     343     396 ..     326     401 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2e-07
   TIGR02021  53 lkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkrae.kedeaenv 105
                 +  k+  D GCG+G   i +     ++ +vD+s+++v++ar+r+  +e + +nv
  MMETSP1061-20121228|2058_1 343 PWAKTAADLGCGAGCSGIAFRSCVEHMIGVDLSPEMVDKARQRNCyDELVVGNV 396
                 5668889***********************************974145556666 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-06   0.00066      64     107 ..      72     115 ..      42     126 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.3e-06
   TIGR01134  64 gkvaagHvRYsTaGsskseeaqPlvvssavgg.lalaHNGnlvna 107
                     ++H+RY+T G  + e++ P+ ++   g   +  HNG++  +
  MMETSP1061-20121228|2058_1  72 TLNMMAHIRYATQGAVALENVHPFQRELW-GInWSFCHNGEVPKY 115
                 334579********9999*******9987.5559******97655 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   8.3e-06    0.0024     160     201 ..     345     385 ..     331     408 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.3e-06
   TIGR00406 160 dkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkN 201
                  k+++D+GcG+G  +ia     ++ +++vD+ p  v++ar+ 
  MMETSP1061-20121228|2058_1 345 AKTAADLGCGAGCSGIAFR-SCVEHMIGVDLSPEMVDKARQR 385
                 4899************975.679****************974 PP

>> TIGR00740  TIGR00740: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.1e-05    0.0031      56     104 ..     347     390 ..     312     403 .. 0.78
   2 ?   -3.6   0.0       5.1   1.5e+03      14      34 ..     431     451 ..     428     453 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.1e-05
   TIGR00740  56 lvydlGcslGaatlsvrrniqqdevkligidnsqpmlerareklkayka 104
                 +  dlGc  G   ++ r  +++    +ig+d s+ m+++ar++ + y++
  MMETSP1061-20121228|2058_1 347 TAADLGCGAGCSGIAFRSCVEH----MIGVDLSPEMVDKARQR-NCYDE 390
                 457******************9....9*************997.45555 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 5.1
   TIGR00740  14 dfifdekvaevfddmlersvp 34 
                  f++ + +  vfdd+ +  +p
  MMETSP1061-20121228|2058_1 431 TFCYIKDLRSVFDDIRQIMIP 451
                 588888999999999988887 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.7e-05     0.005      75     130 ..     330     384 ..     328     411 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.7e-05
   TIGR03534  75 lLveaaleelkkke.klkvlDlgtGsGaIalalakelpdakviavDiseeAlkvark 130
                 +Lv+ +l++ + ++ + + +Dlg+G G+ ++a  + +++  +i+vD+s+e ++ ar+
  MMETSP1061-20121228|2058_1 330 ALVDRVLQHQEPTPwAKTAADLGCGAGCSGIAFRSCVEH--MIGVDLSPEMVDKARQ 384
                 59999999997777677899**************99875..799******9998874 PP

>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.8e-05    0.0054      32     109 ..      37     119 ..      34     125 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.8e-05
   TIGR01135  32 GiAvveegklevvkkkG.kveelkeklee..kelegkvgigHtRWaTHGkpteeNaHPHvdekgei..avvhNGiieNykelr 109
                 G+A+ e++ l++++++    +++ +k+ +   ++++   ++H R+aT G +  eN HP + e   i     hNG +  y+  +
  MMETSP1061-20121228|2058_1  37 GMAIYESQGLRTFHDSQpAADSMIAKFVAdhYPIQTLNMMAHIRYATQGAVALENVHPFQRELWGInwSFCHNGEVPKYSDQK 119
                 6666666666655544303344444443311447777889*******************998754422789999999888776 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.3e-05    0.0069     266     337 ..     317     388 ..     304     415 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.3e-05
   TIGR00479 266 sardFfqvnseqteklvdralealelqg.eekvvDaycGvGtftlplAkqaksvvgvevvkesvekakrnAel 337
                 s + ++   + + + lvdr+l+  e ++ + +  D+ cG G  ++   + +++++gv+  +e+v+ka++    
  MMETSP1061-20121228|2058_1 317 SQQHYYDT-PSKLRALVDRVLQHQEPTPwAKTAADLGCGAGCSGIAFRSCVEHMIGVDLSPEMVDKARQRNCY 388
                 55555554.44557899****9999987467789*********************************864333 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   7.7e-05     0.022      40      82 ..     345     386 ..     329     400 .. 0.82
   2 ?   -1.4   0.0      0.87   2.6e+02     176     192 ..     491     507 ..     483     517 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 7.7e-05
   TIGR01934  40 eekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkka 82 
                 +++  D+ +G+G   i++   +  +++gvDls+em++ a+++ 
  MMETSP1061-20121228|2058_1 345 AKTAADLGCGAGCSGIAFRSCV-EHMIGVDLSPEMVDKARQRN 386
                 57889*********99998877.789**************995 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.87
   TIGR01934 176 eaYeYLaeSiekfpske 192
                 ++  YL+eSi++f  + 
  MMETSP1061-20121228|2058_1 491 HKRWYLEESIQEFGFET 507
                 55569999999996544 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.3e-05    0.0098      47     146 ..     342     452 ..     317     462 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.3e-05
   TIGR01983  47 kleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplk......kieyelksveelaeee.....kesfDvvlamEvlEHvadleeilkecaellkpg 146
                 +   ++  D+GcG+G    ++     +++g+Dls e+++ A++ +  d+l        ++ + k++++ ++ +     ++sf +v + +    ++dl+++  ++ +++ p+
  MMETSP1061-20121228|2058_1 342 TPWAKTAADLGCGAGCSGIAFRSCVEHMIGVDLSPEMVDKARQRNCYDELVvgnvecVLRRQPKHLKKCTNPNhgllaSRSFHLVFSCNTFCYIKDLRSVFDDIRQIMIPN 452
                 44567788*******988888777778****************99998887563322222233334443333223333455666666666666666666666666665555 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   6.3e-05     0.018      72     128 ..     330     384 ..     324     396 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.3e-05
   TIGR03704  72 flvdeavalakersarlvvvdlccGsGavgaalaaaldavelhaadidpaavrcarr 128
                  lvd+ +++ ++++ +++ +dl cG+G  g+a+ + ++   +  +d+ p  v  ar+
  MMETSP1061-20121228|2058_1 330 ALVDRVLQHQEPTPWAKTAADLGCGAGCSGIAFRSCVEH--MIGVDLSPEMVDKARQ 384
                 5999*****************************998875..6789999999998885 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   8.2e-05     0.024     101     156 ..     331     384 ..     326     410 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.2e-05
   TIGR00536 101 lvekaleslisqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaee 156
                 lv++ l++ ++ + +k   Dlg+G Gc ++a  + ++  ++i+vD+s++ +  a++
  MMETSP1061-20121228|2058_1 331 LVDRVLQHQEPTPWAKTAADLGCGAGCSGIAFRSCVE--HMIGVDLSPEMVDKARQ 384
                 5666666666666678999************999999..89********9987753 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0002     0.058     282     330 ..     344     390 ..     294     399 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0002
   TIGR04074 282 garsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldr 330
                  a++ +DlGcG g   + ++  + +e+++gvd+s + ++ka++r  +d+
  MMETSP1061-20121228|2058_1 344 WAKTAADLGCGAG--CSGIAFRSCVEHMIGVDLSPEMVDKARQRNCYDE 390
                 4999********9..5899999*********************977776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 1715.86
//
Query:       MMETSP1061-20121228|2059_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-196  650.3   0.0   2.9e-196  650.1   0.0    1.0  1  TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase


Domain annotation for each model (and alignments):
>> TIGR01358  DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  650.1   0.0  7.1e-200  2.9e-196       1     442 [.      44     491 ..      44     492 .. 0.98

  Alignments for each domain:
  == domain 1    score: 650.1 bits;  conditional E-value: 7.1e-200
   TIGR01358   1 wsleswrskpaaqlPeyPdaealeavldtleslPPlvlageilklkeklaevakGeafllqgGdcaesfkeveadnirdklrvllqmavvltygaslPvvkvgriaGqyakPrsepieakdgvtlpsyrGdving.aafdeaarvpdperlvrayaksaatlnllraltsgGyadlkkvheWnlefvkkspagaryeklaeeidealrfmsavgvaeae.alkrvelytsheallldyeealtrvdskegqlfdlsahllWiGertrqldgahveflrgvknPigikvgpsmeadellklievldPenePGrltlisrlGaekiaeklPelleavkaaGravvWvtdpmhGntleaasGyktrrfddilsevkeffevhkaeGthpGGvhleltGedvteclGG.areit...etdlasryetacdPrlnaeqslelaflvaeklrea 442
                 ws++swr+k+++q+PeyPd eale+v+++l+++ Plv+age+++l ++la++++G+af+l gGdcaesf+e++ d++rd++r++lqma++lt+g+s+Pvvk+gr+aGq+akPrs+p+e+ dgvtlpsy+Gd+in  + f+++ar+ dp+r+v+ay +++ tln+lra+ sgGya+l+++h+W+l+fv+ +p g++y+kl++ ++e+lrfm+a+gv+ ++ a+++v+++t+he+lll+yeea+trvds++gq++d+sahllW+Gertrq   ah ef+rg++nP+g+k++++ +++++l++++ ++P+n PGr+tli+r+ ae i+ klP +++av+a+ ++vvWv+dp+hGn ++a +G+ktr+fd+i++ev +ff+vh++ G+hpGG+hle+tG+dvteclGG ++ +t   e+ las+yet+cdPrlna qslelaf vaek+rea
  MMETSP1061-20121228|2059_1  44 WSPSSWRTKESKQIPEYPDPEALEKVEEQLSKCAPLVFAGEVRNLSDQLARASQGKAFVLFGGDCAESFDEFSVDHVRDTFRIILQMALILTHGGSKPVVKIGRMAGQFAKPRSSPTETIDGVTLPSYQGDNINReFPFTAEARQADPKRMVEAYDQCSQTLNILRAFSSGGYANLSRLHAWTLDFVEATPVGSKYRKLSSIVEESLRFMNAIGVDLDSpAMTQVDFFTAHECLLLPYEEAMTRVDSTSGQYYDTSAHLLWVGERTRQPGFAHFEFVRGLENPLGVKISDKASPEDVLEILNTFNPDNIPGRVTLITRMTAEGIRTKLPAIIKAVQAEDKHVVWVSDPVHGNGFQAENGFKTRSFDAIREEVVAFFDVHRECGSHPGGIHLEMTGKDVTECLGGdTNGVTmdgERGLASKYETHCDPRLNAMQSLELAFCVAEKMREA 491
                 89************************************************************************************************************************************6378******************************************************************************9999****************************************************************************************************************************************************************************************656676333568*****************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 1178.47
//
Query:       MMETSP1061-20121228|2061_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.6   0.1      0.035   11.0   0.0    1.2  1  TIGR02335 hydr_PhnA: phosphonoacetate hydrolase


Domain annotation for each model (and alignments):
>> TIGR02335  hydr_PhnA: phosphonoacetate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.4e-06     0.035      37      75 ..      43      81 ..      26     102 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.4e-06
   TIGR02335 37 lpaiaelteaGfvatadavvpsftnpnnvsivtGappav 75
                l +ia++++a ++ +a+a   s+t +  +sivt +pp +
  MMETSP1061-20121228|2061_1 43 LATIAAIQSASHTIAAEAFSASTTSASTTSIVTDVPPLI 81
                679**********************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1520.32
//
Query:       MMETSP1061-20121228|2064_1  [L=823]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-32  111.2   0.0    6.9e-14   49.3   0.0    3.2  3  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    1.3e-32  111.0   0.0    2.4e-21   73.9   0.0    3.1  3  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    1.6e-27   94.3   1.5      2e-15   54.4   0.1    2.9  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    8.1e-27   91.6   0.7    2.9e-13   46.9   0.1    3.0  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    8.5e-21   71.8   0.5    6.3e-13   45.8   0.0    3.3  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    2.2e-18   63.6   0.1    7.6e-15   52.0   0.0    2.9  3  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    3.3e-15   53.6   0.1    0.00011   18.9   0.0    3.1  3  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    2.4e-14   50.3   0.0    9.4e-11   38.5   0.0    2.4  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    3.8e-14   49.9   0.0    3.1e-07   27.1   0.0    2.3  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    5.3e-05   19.8   1.0      0.004   13.6   0.1    3.0  2  TIGR02316 propion_prpE: propionate--CoA ligase
     0.0012   14.9   0.1      0.013   11.4   0.0    2.3  2  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
     0.0018   13.5   0.0       0.27    6.2   0.0    2.7  3  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.6e-06   0.00056       1      83 [.     165     246 ..     165     277 .. 0.89
   2 !   41.8   0.0   3.7e-14   1.3e-11     102     228 ..     315     439 ..     274     471 .. 0.58
   3 !   49.3   0.0     2e-16   6.9e-14     200     399 ..     483     681 ..     465     692 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.6e-06
   TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeela 83 
                 t+r+++  +n+ A a  ++g + +g+ Va+l+e s++ + + +++ +aG++  +  +++P + l++i e ++ + +++ +  +
  MMETSP1061-20121228|2064_1 165 TFRQMNSIVNQAALAFGRMG-LSKGQHVAILAENSARWLQVDHGIQRAGGVSAVRGADAPLDELRYIYEHSDSAGIVVLQGPR 246
                 89***************865.*****************************************************999987654 PP

  == domain 2    score: 41.8 bits;  conditional E-value: 3.7e-14
   TIGR01733 102 kaaedasaeeaaeak.........skpddlayviyTSGStGkPKgVlvehrslvnllaslar.ryel.....seedrvlqfsslaFDlsveeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellae 228
                 ++a+          +          ++ddla+++yTSG+tG+PKgV++ h +l++ +++  +  +        ++++++++ ++ + +  +  +++l  G + vv+++  +    ++ +++ +++  ++l l+p +le +a+
  MMETSP1061-20121228|2064_1 315 ESAA----------DgikpsdfpkVTKDDLATIVYTSGTTGRPKGVMLAHGNLLHQTSHRLApSKPYeeaepLPGETMVSLLPVWHITERSFEIWMLSRG-CKVVYSS-IR----HFKNDMAKHK-PEWLVLVPRVLEKIAS 439
                 1112..........1112222345679**************************99887765534444223332333444444433322222222333344.3444332.22....2445555555.6777777777766665 PP

  == domain 3    score: 49.3 bits;  conditional E-value: 2e-16
   TIGR01733 200 eaellaallaerkvtvlsltpsllellaeea.see.lkslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldea........lrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlra.dGeleflGRa.DdqvKirGfRielgEieaala 399
                 +++ l++l+++  v ++    ++ + l  ++ ++    +l++++ gG al    +e++ ++a+  ++i +YG TE++   ++ +++ +  +       G++   +++ v+d++        +  +p+g+vG  + +G+++++GY+++p+ tae   e  +       ++ TGDl+r+++  G+l   GR+ D+ v  +G  ie++ ie+a++
  MMETSP1061-20121228|2064_1 483 DPSGLQRLVSKATVAAVAPLNAVGDKLVWSKvQDGfGGNLKTIISGGSALA-GSLEQFYEAAG-FKVIVGYGLTECAPLLAYRRLDGNLVTA---GCCGKACLDTEVRVVDPEsratkysdRPALPDGEVGVVLGRGPQIMKGYYKNPKATAEAIDE--Y------GWFDTGDLGRINPaTGDLILTGRVkDTIVLSNGENIEPTPIEDAIL 681
                 556677888888888888888999999888865554559**********96.67888887876.89**************999999887655...68**************9966655554456899**************************9833..2......299********9736********637778889**********9986 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.03        10       1      45 [.     165     209 ..     165     235 .. 0.88
   2 !   30.6   0.0     1e-10   3.5e-08     109     217 ..     328     439 ..     275     448 .. 0.74
   3 !   73.9   0.0   7.1e-24   2.4e-21     184     370 ..     478     682 ..     467     708 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.03
   TIGR01923   1 tfaeldkeaarlAkalkaqsvrkgdvvallaenslelvllllall 45 
                 tf ++++ +++ A a+   ++ kg+ va+laens++ + + + + 
  MMETSP1061-20121228|2064_1 165 TFRQMNSIVNQAALAFGRMGLSKGQHVAILAENSARWLQVDHGIQ 209
                 68999999**************************98877666555 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 1e-10
   TIGR01923 109 sfsldkiatlifTSgstGkpKavvqtfrnhyasavgsa......eklgftesdnWLlsLPlyHvsGlsilfrallegatlkivdkfaaeqllesianekvthiSlVptqLkrlle 217
                 +++ d++at+++TSg+tG+pK+v  +++n +++    +      e+ +  + ++  + LP++H+   s  + +l  g  ++  +      + +++a++k   + lVp  L++++ 
  MMETSP1061-20121228|2064_1 328 KVTKDDLATIVYTSGTTGRPKGVMLAHGNLLHQTSHRLapskpyEEAEPLPGETMVSLLPVWHITERSFEIWMLSRGCKVVYSSI---RHFKNDMAKHKPEWLVLVPRVLEKIAS 439
                 4568*************************99887654311111133333446778899***********9999999998877665...479*******************99875 PP

  == domain 3    score: 73.9 bits;  conditional E-value: 7.1e-24
   TIGR01923 184 ivdkfaaeqllesianekvthi...SlVptqLkrlleesssepeslrkiLLGGsaipaplieeaqekglpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd.............keghgeilvkganlmkgYlek.gelteaveeqGwlktgDlgeld.gegfllvldRrdd.liISGGENiypeeiEkvlks 370
                 + + ++ + l+  + +  v+ +    +V  +L +   +++    +l++i+ GGsa++  l +     g+++  +yG TE a  +   + +     ++  Gk     e+++  ++               ++g +l +g+++mkgY+++ +   ea++e Gw++tgDlg+++   g l++++R +d +++S GENi p  iE+++  
  MMETSP1061-20121228|2064_1 478 VGNSDDPSGLQRLVSKATVAAVaplNAVGDKLVWSKVQDGF-GGNLKTIISGGSALAGSLEQFYEAAGFKVIVGYGLTECAPLLAYRRLDGNLVTAGCCGKACLDTEVRVVDPEsratkysdrpalpDGEVGVVLGRGPQIMKGYYKNpKATAEAIDEYGWFDTGDLGRINpATGDLILTGRVKDtIVLSNGENIEPTPIEDAILG 682
                 44555555555555555544441115677777776666665.479**********************************99999999999999999**************66669999999999887778999999**********9978899*****************94579*******8873567************99864 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.1   1.6e-12   5.5e-10      34     221 ..     144     358 ..     124     367 .. 0.72
   2 !   54.4   0.1   5.8e-18     2e-15     312     478 ..     522     701 ..     512     729 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 1.6e-12
   TIGR03208  34 rapdkpalvalrvesgavrrlsyreldalvdriavglarlgvgrgdvvslqlpnrwefvalylacarigavlnplmpifrerelsfmlkfadskvlvv...pksfrgfdhaamare.......l.qsklpalrqvvvvdgdgd..ddfdallvtae.......rd...ddpd.aaa.ilrg..drlspddvtqliytsgttgepkgvmhtantll 221
                   p+++al+  ++ + +  +l++r+++++v++ a  + r+g+ +g+ v++   n  +   +     r g v           el ++ +++ds  +vv   p+ + ++ ++a  +e       l +++   +++vv+++ + +   d+++++ +++       ++   ++ + aa  i     ++++ dd++ ++ytsgttg pkgvm +   ll
  MMETSP1061-20121228|2064_1 144 VNPEGVALIDDHLCDKEKINLTFRQMNSIVNQAALAFGRMGLSKGQHVAILAENSARWLQVDHGIQRAGGVSAVRGADAPLDELRYIYEHSDSAGIVVlqgPRLLNKLLKDAGNAEstdsclgLsNESHGPVKHVVLMNREKKtvADMESIMESCNneikisfWEdlvNQEEsAADgIKPSdfPKVTKDDLATIVYTSGTTGRPKGVMLAHGNLL 358
                 46999********9****************************************9999999999999999988777777889***********98888444566666655554444111111121233456899**9987654225777777655412222223322223331333133331156789********************9877776 PP

  == domain 2    score: 54.4 bits;  conditional E-value: 5.8e-18
   TIGR03208 312 lktflcagapipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevkvidadga........klsagevgrllvraasnfggylkrphl..navdaegwfdtgdlafld.aegyiriagrskd.viirggenipvveieally..khpavaqvaivaypderl 478
                 lkt+   g+ + g l e+  ea g k++  +g+te+  +   +  d +  ++ + g+     ev+v+d + +        +l++gevg +l r+   + gy k p+   +a+d  gwfdtgdl  ++ a g + ++gr kd +++  geni    ie  +       v qv + +   +rl
  MMETSP1061-20121228|2064_1 522 LKTIISGGSALAGSL-EQFYEAAGFKVIVGYGLTECAPLLAYRRLDGNLVTAGCCGKACLDTEVRVVDPESRatkysdrpALPDGEVGVVLGRGPQIMKGYYKNPKAtaEAIDEYGWFDTGDLGRINpATGDLILTGRVKDtIVLSNGENIEPTPIEDAILggTNGLVEQVMLTGQDGRRL 701
                 678888888888875.89999****************998887777777777778999999*******7654222222226899*********************9622579999********9875499**********9455689****988888654311455677777777777776 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.0   8.7e-14     3e-11      47     250 ..     164     391 ..     154     405 .. 0.56
   2 !   46.9   0.1   8.5e-16   2.9e-13     313     466 ..     521     683 ..     514     710 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 8.7e-14
   TIGR03205  47 itytelealaetaaaallragygkdasvalylgntp.....dhpinffgalka..ga..............rvvhlspldgeralshklsdsgarllitsdlaallpmalkflek.gll..drlivcedeswgkvgtpkaaipadprivtyadfvkgaakpaewpavkaddvallqytggttglpkgamlthgnltsavsiydvwgkr.sraergdvervicvlplfhi 250
                 +t+ ++++++++aa a+ r g  k   va+   n       dh i+  g + a  ga                + +  l+g r l++ l d+g     t    +l   +   +++  l+  ++  v++ es  ++++ +  i     +v+ ++   +  kp ++p+v+ dd+a + yt gttg pkg ml+hgnl    s      k+ + ae    e ++ +lp++hi
  MMETSP1061-20121228|2064_1 164 LTFRQMNSIVNQAALAFGRMGLSKGQHVAILAENSArwlqvDHGIQRAGGVSAvrGAdapldelryiyehsDSAGIVVLQGPRLLNKLLKDAGNAES-TDSCLGLSNESHGPVKHvVLMnrEKKTVADMESIMESCNNEIKISFWEDLVNQEESAADGIKPSDFPKVTKDDLATIVYTSGTTGRPKGVMLAHGNLLHQTSHRLAPSKPyEEAEPLPGETMVSLLPVWHI 391
                 5666677777777777777777777777776666542222244444444433311110000000000000011222223333333333333333221.1111222222221121102331133466677777777777777777777888888888899************************************9887766555554234455556777777777777 PP

  == domain 2    score: 46.9 bits;  conditional E-value: 8.5e-16
   TIGR03205 313 slatigsggaplpvevaklferkvglklksgwgmtetcspgtg.hplegp.dkpgsiglmlpgieldvvslddp.kk.....vlppgevgelrirgpnvtrgywnraeesaeafvg.drfltgdigyvd.rdgyfflvdrkkdmii.sggfnvypqmieqaiyel 466
                  l ti sgg+ l   + +++e  +g k+  g+g+te c+p  +   l+g     g  g      e+ vv  +   +k     +lp gevg +  rgp++ +gy+++++ +aea+ + + f tgd+g ++   g ++l  r kd i+ s g n+ p  ie+ai   
  MMETSP1061-20121228|2064_1 521 NLKTIISGGSALAGSLEQFYEA-AGFKVIVGYGLTE-CAPLLAyRRLDGNlVTAGCCGKACLDTEVRVVDPESRaTKysdrpALPDGEVGVVLGRGPQIMKGYYKNPKATAEAIDEyGWFDTGDLGRINpATGDLILTGRVKDTIVlSNGENIEPTPIEDAILGG 683
                 578999***********99996.7999********9.66665515677762468999999999999999765431222222369*****************************87646899******984679*********9775399************9743 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   1.8e-15   6.3e-13       9     190 ..     141     359 ..     134     368 .. 0.70
   2 !   21.1   0.0   5.6e-08   1.9e-05     254     466 ..     495     706 ..     487     730 .. 0.69

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 1.8e-15
   TIGR03098   9 saerepdatalklkdr......tltyaaLseevkalasglkalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilk..Dcnvkllvtskerlda.leda.....lakchd........lrtlilvdepekasekka........gaevlsweklkaleeaa.......akvdvidddlaailYtsGstGrPkgvvlshrnlva 190
                  a+ +p+ +al++++       +lt+ +++  v++ a ++  +gl++g+ vai +e +   ++   +  +aggv          + + yi +  D++  +++     l++ l+da     +++c          +++++l++ ++k+ ++          ++++  we+l  +ee+a          +v++ddla+i+YtsG tGrPkgv+l+h nl+ 
  MMETSP1061-20121228|2064_1 141 LAKVNPEGVALIDDHLcdkekiNLTFRQMNSIVNQAALAFGRMGLSKGQHVAILAENSARWLQVDHGIQRAGGVSAVRGADAPLDELRYIYEhsDSAGIVVLQGPRLLNKlLKDAgnaesTDSCLGlsneshgpVKHVVLMNREKKTVADMEsimescnnEIKISFWEDLVNQEESAadgikpsDFPKVTKDDLATIVYTSGTTGRPKGVMLAHGNLLH 359
                 56666777777655444445559**************************************************987765555556677776511544444444444444414433111113344331111222257999999999887765444555555567778**99999887766664433457899*************************985 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 5.6e-08
   TIGR03098 254 glaavPPlWlqLakldwp...eeaaeslRyltnsGGalpkavlarlRkllpeaklylmYGLteafRstyLdPeevdrr...PdsiGkaipnaevlvlredGseca........peeeGelvhrGalvakGYWndpektaerfrplpkrqselkltelavfsGDlvrrD.eeGflyfvgR.rdemiktsGyRvsPteveevlla.tglvaeavvlgvpdpelGqaivlvvv 466
                 ++aav Pl +   kl w    +    +l+ + + G al+ + l ++ ++ +  k+ + YGLte   +  L   ++d      +  Gka   +ev v+ ++   ++         +e+G +  rG+ + kGY+++p++tae   +   ++            GDl+r + + G+l + gR +d+++   G  + Pt +e+++l+ t+ + e v+l+    + G ++v+++v
  MMETSP1061-20121228|2064_1 495 TVAAVAPLNAVGDKLVWSkvqDGFGGNLKTIISGGSALAGS-LEQFYEA-AGFKVIVGYGLTEC--APLLAYRRLDGNlvtAGCCGKACLDTEVRVVDPESRATKysdrpalpDGEVGVVLGRGPQIMKGYYKNPKATAEAIDEYGWFD-----------TGDLGRINpATGDLILTGRvKDTIVLSNGENIEPTPIEDAILGgTNGLVEQVMLT---GQDGRRLVAIAV 706
                 56677777665555555422255667788887666665544.4555443.45678889****96..5666667776542226889************9887655422222232479999*********************988776633...........589998653789*******557777888**********99885244444555555...255777776666 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0007      0.24      31     134 ..     140     249 ..     131     306 .. 0.71
   2 ?   -0.0   0.0      0.12        43     164     205 ..     314     355 ..     285     362 .. 0.77
   3 !   52.0   0.0   2.2e-17   7.6e-15     299     451 ..     521     682 ..     479     703 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0007
   TIGR02275  31 eqaakkpdaiaii....cger..kfsyrelderadnlaasltklGikkgdtavvqlpniaefyivffallklGvaPvlalfshrkselkayaeqieaalliidrahslfd 134
                 e a+ +p+ +a+i    c+++  ++++r+++  +++ a  + ++G+ kg+++ +   n a +  v   + ++G +  +        el++  e++++a +++ +  +l++
  MMETSP1061-20121228|2064_1 140 ELAKVNPEGVALIddhlCDKEkiNLTFRQMNSIVNQAALAFGRMGLSKGQHVAILAENSARWLQVDHGIQRAGGVSAVRGADAPLDELRYIYEHSDSAGIVVLQGPRLLN 249
                 56777788888872222344412589*********************************************987766666777889999999999999888766555543 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.12
   TIGR02275 164 ksaleslaeevkleetkadevaffqlsGGstGtpkliPrthd 205
                 ++  ++  + +++ +++ d++a +  + G+tG pk +  +h 
  MMETSP1061-20121228|2064_1 314 EESAADGIKPSDFPKVTKDDLATIVYTSGTTGRPKGVMLAHG 355
                 344556667789999********************8877775 PP

  == domain 3    score: 52.0 bits;  conditional E-value: 2.2e-17
   TIGR02275 299 slkllqvGGaklsealarrvpkvlgcklqqvfGmaeG..lvnytrlddsdeiivttqGkPispddevrvvdeegep........vaeGeaGrlltrGPytirGyykaeehnakafdaeGfyitGdlvkltk.eGyivveGrakdqin.rGGekiaaeeienlllk 451
                  lk +  GG+ l+ +l  +  ++ g k+   +G++e   l++y rld +  ++        + d evrvvd e +         +++Ge+G +l rGP  ++Gyyk+++  a+a d+ G++ tGdl ++++  G ++++Gr+kd i    Ge i    ie+ +l 
  MMETSP1061-20121228|2064_1 521 NLKTIISGGSALAGSLE-QFYEAAGFKVIVGYGLTECapLLAYRRLDGN--LVTAGCCGKACLDTEVRVVDPESRAtkysdrpaLPDGEVGVVLGRGPQIMKGYYKNPKATAEAIDEYGWFDTGDLGRINPaTGDLILTGRVKDTIVlSNGENIEPTPIEDAILG 682
                 57777788888888775.56677789999999999965599*****864..44444444578899******8876411122222579******************************************97369***********973679****9999999985 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.7e-05    0.0057      28     110 ..     161     243 ..     143     307 .. 0.79
   2 !   17.9   0.0   6.4e-07   0.00022     157     190 ..     328     361 ..     276     369 .. 0.80
   3 !   18.9   0.0   3.3e-07   0.00011     279     447 ..     521     702 ..     507     736 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.7e-05
   TIGR02262  28 vsslsygeleaevrrvaaalrrlGvkreervllvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvse 110
                   +l++ ++++ v+++a a+ r+G+ + + v+++  ++  +  v  G  raG v  +  +    d+ +y+ e+s +  ++v +
  MMETSP1061-20121228|2064_1 161 KINLTFRQMNSIVNQAALAFGRMGLSKGQHVAILAENSARWLQVDHGIQRAGGVSAVRGADAPLDELRYIYEHSDSAGIVVLQ 243
                 5579************************************************9999988888899999999988776655543 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 6.4e-07
   TIGR02262 157 atkaddpafwlyssGstGapkGvvhvhsnlrvta 190
                   + dd a  +y+sG+tG+pkGv+  h nl + +
  MMETSP1061-20121228|2064_1 328 KVTKDDLATIVYTSGTTGRPKGVMLAHGNLLHQT 361
                 45689************************97754 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 3.3e-07
   TIGR02262 279 rlrlctsaGealpeevGkrwkarfGvdildGvGstellhiflsnl..pddvkyGtsGkpvpGyrlrlvd..dggedva......dgevGellvsgpssaagywnnreksratf.eGewtrsGdkyvrn.ddGsytyaGrtddllkvs.Giyvspfevesaliah.eavleaavvgaededgli 447
                 +l+   s G al  ++ + ++   G  ++ G G te   ++   +   + v  G++Gk     ++r+vd   ++ + +      dgevG +l  gp   +gy++n++ ++++  e +w  +Gd    n + G  + +Gr  d + +s G  + p  +e a++   ++++e  +++ +d   l+
  MMETSP1061-20121228|2064_1 521 NLKTIISGGSALAGSLEQFYE-AAGFKVIVGYGLTECAPLLAYRRldGNLVTAGCCGKACLDTEVRVVDpeSRATKYSdrpalpDGEVGVVLGRGPQIMKGYYKNPKATAEAIdEYGWFDTGDLGRINpATGDLILTGRVKDTIVLSnGENIEPTPIEDAILGGtNGLVEQVMLTGQDGRRLV 702
                 6889999*****999987665.579************998766551145699****************953333332222223389********************99999873569******86655389********98877665499*********998751455666666666666665 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   2.8e-13   9.4e-11      50     265 ..     125     358 ..     104     366 .. 0.76
   2 !    9.3   0.0   0.00019     0.063     418     523 ..     572     682 ..     551     757 .. 0.77

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 2.8e-13
   TIGR02188  50 WfedgelnvsyncvdrhvekrkdkvaiiwegdeegedsrkltYaellrevcrlanvlkelGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvie...lkkivdealekaee...svekvlvvkrtgeevaewkegrD........vwweelvekeasae..cepe...kldsedplfiLYtsGstGkPkGvlhttgGyl 265
                   +d++l+ + +     ++ +++ va+i +   ++ ++ +lt++++ + v+++a ++ ++G+ kg++vai          +  +++R G v +v  a    + l+   + +++  ++  ++    +k ++     + +d+ l  ++e    v++v++++r ++ va++++ ++          we+lv++e+sa+  ++p    k+  +d+  i+YtsG+tG+PkGv+ + g  l
  MMETSP1061-20121228|2064_1 125 TIRDSKLDSCPQLWTELAKVNPEGVALIDDHLCDK-EKINLTFRQMNSIVNQAALAFGRMGLSKGQHVAILAENSARWLQVDHGIQRAGGVSAVRGADAPLDELRYIYEHSDSAGIVVLQGPRLLNKLLKdagNAESTDSCLGLSNEshgPVKHVVLMNREKKTVADMESIMEscnneikiSFWEDLVNQEESAAdgIKPSdfpKVTKDDLATIVYTSGTTGRPKGVMLAHGNLL 358
                 55677777777777777777999999997776444.5899*************************************9999*************9999999****9999999888888777666666554111556778877554443478*********9999888764333111111125799999985544312566523367899******************98877554 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00019
   TIGR02188 418 pgsatlPlfGieaevvdeegkeve.eeeeg....gvLvikkpwPsmlrtiygdeerfvetYfkklkglyftGDgarrd.kdGyiwilGRvDdvinvs.Ghrlgtaeiesalvs 523
                 +g++ +  +  e++vvd e++ ++ +++ +     v v+    P ++++ y++++   e+  +   g + tGD  r + + G++ ++GRv d i +s G ++  + ie+a++ 
  MMETSP1061-20121228|2064_1 572 AGCCGKACLDTEVRVVDPESRATKySDRPAlpdgEVGVVLGRGPQIMKGYYKNPKATAEAIDE--YGWFDTGDLGRINpATGDLILTGRVKDTIVLSnGENIEPTPIEDAILG 682
                 667777777777777776666555322211222135577778899999999999977666443..57899***98876267*********9998887699**********975 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   9.2e-10   3.1e-07     122     173 ..     313     363 ..     269     377 .. 0.69
   2 !   20.5   0.0   9.4e-08   3.2e-05     336     416 ..     600     679 ..     537     728 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 9.2e-10
   TIGR01734 122 leeieeekaeavelekavkeddnyyiiytsGstGkPkGvqishdnLvsftnW 173
                 +ee  +++ ++ ++  +v +dd   i+ytsG+tG+PkGv + h nL+  t  
  MMETSP1061-20121228|2064_1 313 QEESAADGIKPSDF-PKVTKDDLATIVYTSGTTGRPKGVMLAHGNLLHQTSH 363
                 33333444444444.468889999**********************988765 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 9.4e-08
   TIGR01734 336 eklsegekGeivivGdsvskGylnnpekteeaffeaegkrayrtGDagtie.ddgllfyqGrlDfqikl.nGyrieLediean 416
                   l++ge G ++  G+ + kGy +np+ t+ea    +++  + tGD g i+ + g l++ Gr+   i l nG  ie   ie  
  MMETSP1061-20121228|2064_1 600 PALPDGEVGVVLGRGPQIMKGYYKNPKATAEAI---DEYGWFDTGDLGRINpATGDLILTGRVKDTIVLsNGENIEPTPIEDA 679
                 3589999999999******************96...667789********85689*******966655538888887777765 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.2e-05     0.004      65     252 ..     145     352 ..     126     360 .. 0.65
   2 ?    1.2   0.0     0.069        24     166     206 ..     402     441 ..     400     508 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.2e-05
   TIGR02316  65 rgeqlalvavssetgeertltyrqlhrevnalasalralgvrrgdrvliylpmiaeaalallacarigaihsvvfggfashslaariddatpklivsadagarggkviey...kklldaai..aeaqhkp.ahvllvdrg...laklrrv...pgrdvd...yaalrrqhedadveve.....wlesnepsyilytsgttgkpkgvqr 252
                 ++e +al+      +e+ +lt+rq+   vn+ a a+  +g+ +g+ v i   + a          r g + +v       ++l    + +    iv  +      k+++     +  d+++  ++  h p +hv+l++r+   +a+++ +     +++    +  l +q e+a   ++      +  ++ + i+ytsgttg+pkgv  
  MMETSP1061-20121228|2064_1 145 NPEGVALIDDHLCDKEKINLTFRQMNSIVNQAALAFGRMGLSKGQHVAILAENSARWLQVDHGIQRAGGVSAVRGADAPLDELRYIYEHSDSAGIVVLQGPRLLNKLLKDagnAESTDSCLglSNESHGPvKHVVLMNREkktVADMESImesCNNEIKisfWEDLVNQEESAADGIKpsdfpKVTKDDLATIVYTSGTTGRPKGVML 352
                 567777777777777888899999999999999999999999999999998888888888888899999866554444445565555555555566555555556666541113445555422334454437999998862223445544211334554222356888888776443311111466788899*************975 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.069
   TIGR02316 166 arggkvieykklldaaiaeaqhkpahvllvdrglaklrrvp 206
                 +rg kv+ y  +     + a+hkp+ ++lv r l+k++   
  MMETSP1061-20121228|2064_1 402 SRGCKVV-YSSIRHFKNDMAKHKPEWLVLVPRVLEKIASGV 441
                 6888887.8889999999*****************987543 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   3.9e-05     0.013     109     292 ..     158     360 ..     124     367 .. 0.65
   2 ?   -3.4   0.0       1.2     4e+02     502     525 ..     639     663 ..     633     679 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.9e-05
   TIGR01217 109 ekesakvtfeelrrqvaslaaalralGvkkGdrvagylpnipeavaallatasvGaiwsscspdfGargvldrfsqiepkllfsvdg.......yvynGkehdrrekvrevakelpdlravvlip....yvgdreklapkvegal...tledllaa...aqaa..elvfeqlpfdhplyilfssGttGvpkaivhsaGGtlvq 292
                 +ke+ ++tf ++   v + a a+ ++G+ kG  va +  n+++ +++       G++ +    d   + +   ++  +   +++ +g       ++  G  + +++ +     + + +++vvl+      v d e++    ++ +   ++edl+     a ++  +  f ++  d    i+++sGttG pk ++ + G +l q
  MMETSP1061-20121228|2064_1 158 DKEKINLTFRQMNSIVNQAALAFGRMGLSKGQHVAILAENSARWLQVDHGIQRAGGVSAVRGADAPLDELRYIYEHSDSAGIVVLQGprllnklLKDAGNAESTDSCLGLSNESHGPVKHVVLMNrekkTVADMESIMESCNNEIkisFWEDLVNQeesAADGikPSDFPKVTKDDLATIVYTSGTTGRPKGVMLAHGNLLHQ 360
                 58889999999999999999999999999999999999999988877555555555544444444333333333333333444444411111113345555666666666667777788888876222235555666556666653336899997644322222267899******9***************99999988755 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.2
   TIGR01217 502 ahGdyieltp.rGgivihGrsdatl 525
                   Gd  +++p +G +++ Gr   t+
  MMETSP1061-20121228|2064_1 639 DTGDLGRINPaTGDLILTGRVKDTI 663
                 57999****999********87665 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0054       1.8     241     326 ..     137     219 ..     132     293 .. 0.81
   2 !    6.2   0.0    0.0008      0.27     413     440 ..     330     357 ..     308     362 .. 0.87
   3 ?   -0.8   0.0       0.1        36     680     712 ..     638     672 ..     634     729 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0054
   TIGR03443 241 ifaenaekhPdrtcvvetksalapssktreftykqideasnilahyllktGikrgdvvmvyasrgvdlvvavlGvlkaGatfsvid 326
                 +++e a+  P+ + +++ +     ++++ ++t++q++   n  a ++ + G+ +g+ v++ a  +   +    G+ +aG++ +v  
  MMETSP1061-20121228|2064_1 137 LWTELAKVNPEGVALIDDHLC---DKEKINLTFRQMNSIVNQAALAFGRMGLSKGQHVAILAENSARWLQVDHGIQRAGGVSAVRG 219
                 566677788888888877776...778889*************************************999999*****99866644 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0008
   TIGR03443 413 GPdsnptlsftsGseGiPkGvkGrhfsl 440
                   d  +t+ +tsG++G+PkGv   h  l
  MMETSP1061-20121228|2064_1 330 TKDDLATIVYTSGTTGRPKGVMLAHGNL 357
                 568899***************9888665 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.1
   TIGR03443 680 yrtGdlGrylP.dGnvecsGraddqvki.rGfrie 712
                 + tGdlGr  P +G+   +Gr  d + +  G  ie
  MMETSP1061-20121228|2064_1 638 FDTGDLGRINPaTGDLILTGRVKDTIVLsNGENIE 672
                 679*******966*********9988652455565 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (823 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.74u 0.18s 00:00:00.92 Elapsed: 00:00:00.71
# Mc/sec: 1529.96
//
Query:       MMETSP1061-20121228|2065_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-09   36.4   0.3    2.3e-09   35.2   0.2    1.6  1  TIGR00165 S18: ribosomal protein S18


Domain annotation for each model (and alignments):
>> TIGR00165  S18: ribosomal protein S18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.2   5.7e-13   2.3e-09      20      66 ..     327     373 ..     312     377 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 5.7e-13
   TIGR00165  20 YkDlellkkfisergKilPrRiTGtsakyqrklakaiKRaRylaLlP 66 
                 +  l+ll+++i+++g+i+ r      ak qrk+ak iKRaR+l L+P
  MMETSP1061-20121228|2065_1 327 HNNLALLRRYITPSGQIMNRVQSRLGAKDQRKVAKLIKRARHLGLIP 373
                 45799*************9999999*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1487.55
//
Query:       MMETSP1061-20121228|2066_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.62    7.1   4.0       0.65    7.0   2.8    1.0  1  TIGR01478 STEVOR: variant surface antigen, stevor family
        2.1    6.0  12.6        2.4    5.8   8.8    1.1  1  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family
        2.8    4.6  12.6        3.2    4.4   8.7    1.1  1  TIGR03923 T7SS_EccE: type VII secretion protein EccE


Domain annotation for each model (and alignments):
>> TIGR01478  STEVOR: variant surface antigen, stevor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   2.8   0.00048      0.65     199     250 ..       6      59 ..       2      70 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00048
   TIGR01478 199 iaaaktaai.eaiagslsvdiasklskalaginfln.ssslesalvtavgivsg 250
                 ia+a+ aa   a++ + ++ ia  ++ +++++  l+ ++s+e+a  ++vg  +g
  MMETSP1061-20121228|2066_1   6 IAVAAAAAAvAAATVAIAIVIAIVIAIVITVTATLSlQESIEAAQYSSVGFQHG 59 
                 444444433033334444444444555555555444256888888888777664 PP

>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   8.8    0.0018       2.4     117     150 ..       6      37 ..       2      51 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0018
   TIGR04032 117 vavaavlavvvvaaVAvatvalaavavnpavdst 150
                 +avaa++a+v++a+VA a+v+++++a++    +t
  MMETSP1061-20121228|2066_1   6 IAVAAAAAAVAAATVAIAIVIAIVIAIVI--TVT 37 
                 45666666666666666666666666664..333 PP

>> TIGR03923  T7SS_EccE: type VII secretion protein EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   8.7    0.0023       3.2       4      44 ..       3      39 ..       1      47 [. 0.53

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0023
   TIGR03923  4 tlavlvvlqvavlaawvatrqaaaawwvalvvAvvvllllf 44
                ++++ v++++a++aa    + +a a ++a+v+A+v+++ ++
  MMETSP1061-20121228|2066_1  3 AIRIAVAAAAAAVAA----ATVAIAIVIAIVIAIVITVTAT 39
                344444444444444....3433456777777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       621  (0.15139); expected 82.0 (0.02)
Passed bias filter:                      321  (0.0782545); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 282.83
//
Query:       MMETSP1061-20121228|2069_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2020.80
//
Query:       MMETSP1061-20121228|2071_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 1045.76
//
Query:       MMETSP1061-20121228|2073_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.9e-110  365.1   0.0   9.9e-110  364.6   0.0    1.2  1  TIGR03400 18S_RNA_Rcl1p: 18S rRNA biogenesis protein RCL1
    2.5e-22   77.3   0.0    1.6e-13   48.4   0.0    3.1  2  TIGR03399 RNA_3prim_cycl: RNA 3'-phosphate cyclase


Domain annotation for each model (and alignments):
>> TIGR03400  18S_RNA_Rcl1p: 18S rRNA biogenesis protein RCL1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.6   0.0  4.8e-113  9.9e-110       5     358 ..      84     482 ..      79     484 .] 0.95

  Alignments for each domain:
  == domain 1    score: 364.6 bits;  conditional E-value: 4.8e-113
   TIGR03400   5 gsrnfrqrlvlstLsgkpvkiskirsede.npGlrdyevsllrLlekvtngskieisetgttliykPGlitggslehecpaersigYyleplllLapFskkplkitlkGiTnse..edlsvDtirtavlpllkkfgi.....eeeelelkilkRgaa...............plGgGevelkvpvlk.qlktihlteegkvkrirGvaystr.vspslanrmieaargvlnkllpdvyittdvrk..gkesgkspGyglsLvaettkgvvisaeavssa.....................kegelpEdvGkeaakkLLeeiskgGcvdsaaqslvlllmalgkedvsklrlgklseetvellrdlkeffgvefklkedeeeeeskkvllsvvGigvvnvskk 358
                 g+ +frqr+v+s+Ls +p+ i++ir++d  npGl++ye+s+lrL++++tngsk+ei++tgt+l ++PG ++gg+++h+cp++rsig+++e +l LapF+k++l++t++GiT+     d+svD  + ++ +l++ fgi     e+e+ e+ il+R+aa                +  G+v l++p++k +l++i+++++g++krirG a s++ vs+s+a r++ +a+gv+++llpdv+i+tdv+    ++ g +pG  +++++e+ +gv+++ae++++                      ++ elpEd+Gk+ a++LLeei +gGc+d++ qsl++l mal++edvs++r+g+ls++ +e+lr +k+ f+vefk+ +d    e+k+vlls++G+g+ n++k 
  MMETSP1061-20121228|2073_1  84 GAVQFRQRIVVSLLSHRPLLIRNIRADDLqNPGLKEYEASFLRLIDQITNGSKMEINSTGTQLRFQPGGLMGGDIQHDCPNSRSIGWFVEGILPLAPFGKENLEVTFTGITDGLceVDPSVDYWKRSTGQLFRAFGIgvdddEDEKPEIEILQRAAApttsvenstmasnnlSNYNGKVRLTCPIVKqSLTSIDWIDPGRIKRIRGNAISCKiVSSSMAARVAYSAKGVFHRLLPDVWIHTDVHTpkRNRCGPNPGMMMVVTSESDTGVTLTAECCMTHhnqqqqqeqqqhtsknkasntRGAELPEDLGKRGAYMLLEEIRRGGCIDTSSQSLAFLWMALTPEDVSRIRVGTLSQYSIETLRLIKQAFDVEFKVTPD---METKTVLLSCLGTGYRNMAKA 482
                 7889************************99**********************************************************************************97769*******************96665557889*********9999*****99999998999***********99*********************996799***************************982245567778*********************99999*****************99999**************************************************************************9...79****************996 PP

>> TIGR03399  RNA_3prim_cycl: RNA 3'-phosphate cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   7.7e-17   1.6e-13      15     146 ..      88     222 ..      82     225 .. 0.93
   2 !   17.3   0.0   2.2e-07   0.00045     161     325 ..     260     456 ..     257     457 .. 0.67

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 7.7e-17
   TIGR03399  15 lRtalsLsaltgkpvrienIRakR.skpGLarQHLtavkavaelcnaeveGaelgSteleFePgkikggeyevdigtAgsvtLvlQtvlpalllaekesevkvkGGTd..vkaaPpvdylrevllplleklGvka 146
                  R  + +s l+ +p+ i+nIRa   ++pGL++   + ++++ +++n++    +   t+l+F+Pg + gg+ + d     s+   +  +lp++ + +++ ev+ +G Td   ++ P+vdy ++++ +l + +G+ +
  MMETSP1061-20121228|2073_1  88 FRQRIVVSLLSHRPLLIRNIRADDlQNPGLKEYEASFLRLIDQITNGSKMEINSTGTQLRFQPGGLMGGDIQHDCPNSRSIGWFVEGILPLAPFGKENLEVTFTGITDglCEVDPSVDYWKRSTGQLFRAFGIGV 222
                 6888999***************75389********************9998888999***************************************************555899******************965 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 2.2e-07
   TIGR03399 161 Gevalevepvkk.lkeleleergelkkvkgialvan.lpahvaerqakaaeellrkagldaeieiev...kekalgkGsgivltaete...klllga.sal.....................gkkgks.aekvgeeaaeelleelesgaavdehlaDqlllylala.egessfktseltaHlktniavvekflkvkf 325
                 G+v+l+   vk+ l +++ ++ g++k+++g a   + + +++a r a +a+ +++++ +d+ i+++v   k++ +g+  g+++++++e    ++l+a +++                       +g +  e +g++ a +llee++ g ++d+  +    l++al+ e+ s++++  l++    + +++++ ++v+f
  MMETSP1061-20121228|2073_1 260 GKVRLTCPIVKQsLTSIDWIDPGRIKRIRGNAISCKiVSSSMAARVAYSAKGVFHRLLPDVWIHTDVhtpKRNRCGPNPGMMMVVTSEsdtGVTLTAeCCMthhnqqqqqeqqqhtsknkasNTRGAElPEDLGKRGAYMLLEEIRRGGCIDTSSQSLAFLWMALTpEDVSRIRVGTLSQYSIETLRLIKQAFDVEF 456
                 77777776666559999999999999999999977768899999999999999999999999998888886666665555444443332122222220222111111111000000000000233332247899999999999999999999999999999999983457999999999999999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 1521.02
//
Query:       MMETSP1061-20121228|2081_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1087.34
//
Query:       MMETSP1061-20121228|2076_1  [L=703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-29  100.6  11.4    2.4e-24   83.1   3.2    4.6  4  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
      4e-26   89.6   1.3      4e-26   89.6   0.9    2.1  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    2.8e-14   51.1   4.8    1.5e-11   42.1   0.9    5.2  6  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      1e-10   39.3  12.7    4.7e-07   27.4   0.5    4.9  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    1.9e-07   27.5   8.2    4.6e-06   22.9   0.4    2.9  3  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.3    0.0063       5.2     471     506 ..     133     169 ..     119     198 .. 0.82
   2 !   83.1   3.2   2.9e-27   2.4e-24     115     295 ..     413     593 ..     387     595 .. 0.95
   3 !   30.4   0.4   2.4e-11     2e-08     344     435 ..     540     639 ..     539     641 .. 0.84
   4 !    9.4   0.0   5.6e-05     0.046     378     411 ..     616     649 ..     612     657 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0063
   TIGR02917 471 lgaiylgkkdlakAreafekALk.iepdffpAlanLA 506
                 +g ++++kk++ +A + f +AL  ie+ ++ A+ + A
  MMETSP1061-20121228|2076_1 133 KGKALFKKKQYLEAASTFTEALDcIEQHNANAAQSSA 169
                 7889999999999999999999658888888887766 PP

  == domain 2    score: 83.1 bits;  conditional E-value: 2.9e-27
   TIGR02917 115 kksslddeeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedAretlqaalksapeyl 295
                   ++ +d+++a ll+  g  +    el++A   ++q ++ +p ++e  +  A +++ +n+ ++a +l d++L++dp++vdAll +++l +++gn e+A++++++ ++l+pn+++a+l+la +l ++++ ++A++++da+ +  p s+ +  +k+ + f +++  +A  ++++a   +p++ 
  MMETSP1061-20121228|2076_1 413 IREAMKDDDYARLLEWTGMVQHWAYELDAAVTCYQQCAQLEPINAEILVKHAGVLMDANRHADALELFDRALAIDPNAVDALLHRANLRMIQGNMEAATKDLKQCVKLRPNFVMARLRLAAVLTALQQSDAAKEQLDAAERADPDSSDVLSYKGELLFTQNDLVRAKREFERASELDPSNP 593
                 4456679**********************************************************************************************************************************************************************99999975 PP

  == domain 3    score: 30.4 bits;  conditional E-value: 2.4e-11
   TIGR02917 344 kvdeaiatlspalekdsddsallsllGeayLekgdfekAaeylakaseldPenaa..aktklgiskL......aqGdkseaiadLetAvkldpellrael 435
                 + d a+ +l +a+++d+d+s +ls  Ge +  + d+ +A++++++aseldP n+   ++t+l++++L          ++ea   Le+A+++dp+   a +
  MMETSP1061-20121228|2076_1 540 QSDAAKEQLDAAERADPDSSDVLSYKGELLFTQNDLVRAKREFERASELDPSNPTpyVNTALAVLNLppepgkQLAMAEEACRLLEKAIAVDPQFQAAYV 639
                 56889***********************************************98633778888999844222223346889999*********9988765 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 5.6e-05
   TIGR02917 378 dfekAaeylakaseldPenaaaktklgiskLaqG 411
                 ++e+A ++l+ka ++dP+  aa+++lg++kL++ 
  MMETSP1061-20121228|2076_1 616 MAEEACRLLEKAIAVDPQFQAAYVQLGQLKLGMA 649
                 789****************************874 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   6.9    0.0039       3.2      66     159 ..      59     159 ..      47     212 .. 0.69
   2 !   89.6   0.9   4.9e-29     4e-26     331     581 ..     423     678 ..     387     693 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0039
   TIGR00990  66 kpklskkerrkrkdaekeaekkaeekkstapkaaaves......adelpeidessvvnlseeer.kkyaaklkekGnkayrnkdfdkaielyskalllked 159
                  +  sk  r+   +a  +a+ +a+++ + +++a  v++      + ++p i   ++ n+++e+  +    +l +kG   +++k++ +a   ++ al + e 
  MMETSP1061-20121228|2076_1  59 SKGTSKAKRKASTNASANANANANANTTINASAKKVYTtketaaVTDNPGIHTPKRSNVTDEKElHSKIEELDKKGKALFKKKQYLEAASTFTEALDCIEQ 159
                 33456666666666666666666666666677777776222222456788888888898876541556678999**********************99876 PP

  == domain 2    score: 89.6 bits;  conditional E-value: 4.9e-29
   TIGR00990 331 alalelrGifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfdealekfdlaielekelkpisvnvlPlinkalalfr.......tkedfieaekllekalildPesdiavitlaqlllqq....ekvdealklferaaelarteeelvqa 581
                 a  le +G+ +    + + a    +++ +l+P  ++  +k a + ++ +   +a e fd+al+ d++  d   hra l++i+g+ + a+kd +++++l p+f+++ ++la +   l++ + ++  +  a +  p+  dv  y +ell  +n++ +a ++f+ a el+      +vn       ala+++             ea +lleka+ +dP+ + a + l ql+l          e + l+e+     rt++e+ + 
  MMETSP1061-20121228|2076_1 423 ARLLEWTGMVQHWAYELDAAVTCYQQCAQLEPINAEILVKHAGVLMDANRHADALELFDRALAIDPNAVDALLHRANLRMIQGNMEAATKDLKQCVKLRPNFVMARLRLAAVLTALQQSDAAKEQLDAAERADPDSSDVLSYKGELLFTQNDLVRAKREFERASELDPSNPTPYVN------TALAVLNlppepgkQLAMAEEACRLLEKAIAVDPQFQAAYVQLGQLKLGMasdlSTAREVVDLYEKGLSTCRTKDEMKDL 678
                 5567888999999889999999999999****9999********************************************************************************************************************************999776554554......44444443333321555667999*************************752111456899**************997655 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.12        98     109     127 ..     137     155 ..     126     195 .. 0.78
   2 ?   -0.9   0.3      0.26   2.2e+02     143     224 ..     246     331 ..     237     335 .. 0.71
   3 ?    1.0   0.0     0.066        54     152     194 ..     349     391 ..     330     437 .. 0.69
   4 ?   -2.2   0.0      0.63   5.1e+02      63     101 ..     421     459 ..     407     461 .. 0.70
   5 !   19.0   0.1   2.2e-07   0.00018     144     196 ..     466     518 ..     456     523 .. 0.91
   6 !   42.1   0.9   1.9e-14   1.5e-11      43     198 ..     503     665 ..     502     699 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.12
   TIGR02521 109 LcqqkkyeeAeqqfeaAie 127
                 L+++k+y eA   f++A+ 
  MMETSP1061-20121228|2076_1 137 LFKKKQYLEAASTFTEALD 155
                 7788888888888888764 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.26
   TIGR02521 143 lcalkagdtekaekyltral...kidpkrpesllelaelklkkgqyaeAralleryqqtv.eqtaesLwLgiriakalgdaaaake 224
                  ca++++ +++ + +l++ l   +  p ++e+l el++  l +      +++++r +++   ++  sL L+ ++   +  ++  k+
  MMETSP1061-20121228|2076_1 246 CCAMQLQYMQQHRDQLRMGLppsAPPPVQQEKLEELVQKLLPEHLEEYDQKIVQRMKNSKkTANNASLQLQLQLPSDYTLRQLLKS 331
                 58888888888888888888222334667778888887777777777777777887777656677788888877666665555555 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.066
   TIGR02521 152 ekaekyltralkidpkrpesllelaelklkkgqyaeAraller 194
                    e+ l+ al + + ++ s+ ++a l+l  g++   + ++++
  MMETSP1061-20121228|2076_1 349 SDLEEELETALSAPEASASSMATIASLHLAMGRRHICDGAYKQ 391
                 5556666666666666666666666666555554444444433 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 0.63
   TIGR02521  63 kdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                 ++a+     +++     el++A   +++  +l+p n+++
  MMETSP1061-20121228|2076_1 421 DYARLLEWTGMVQHWAYELDAAVTCYQQCAQLEPINAEI 459
                 455555555555566668889999999999999988877 PP

  == domain 5    score: 19.0 bits;  conditional E-value: 2.2e-07
   TIGR02521 144 calkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryq 196
                 ++++a++++ a + + ral+idp+  ++ll  a+l + +g++ +A++ l++  
  MMETSP1061-20121228|2076_1 466 VLMDANRHADALELFDRALAIDPNAVDALLHRANLRMIQGNMEAATKDLKQCV 518
                 5799******************************************9998865 PP

  == domain 6    score: 42.1 bits;  conditional E-value: 1.9e-14
   TIGR02521  43 eqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcal........kagdtekaekyltralkidpkrpesllelaelklk.kgqyaeAralleryqqt 198
                  qg++e+A+++l++ ++l p+   a l lA ++  l++ ++A+e+   A + +p++ dvl   G  L+ q +   A++ fe+A e    ++   +y N +l +l        ++  +e+a   l++a+++dp+ + +  +l +lkl  + ++  Ar++++ y++ 
  MMETSP1061-20121228|2076_1 503 IQGNMEAATKDLKQCVKLRPNFVMARLRLAAVLTALQQSDAAKEQLDAAERADPDSSDVLSYKGELLFTQNDLVRAKREFERASELD--PSNPTPYVNTALAVLnlppepgkQLAMAEEACRLLEKAIAVDPQFQAAYVQLGQLKLGmASDLSTAREVVDLYEKG 665
                 59*********************************************************************************8754..4444555555555541111111144567888999**********************97245777899988888764 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.11        93      25      80 ..     134     155 ..     121     179 .. 0.57
   2 ?   -0.5   0.3      0.24     2e+02      47      69 ..     232     254 ..     229     257 .. 0.86
   3 !   27.4   0.5   5.7e-10   4.7e-07      33     116 ..     438     521 ..     429     526 .. 0.94
   4 !   15.0   0.0   3.9e-06    0.0032      56     123 ..     529     594 ..     521     606 .. 0.91
   5 !    8.9   0.0   0.00031      0.26      68     100 ..     575     607 ..     569     648 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.11
   TIGR02552  25 AYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaa 80 
                 + +l+++++y eA+  F                                  + a+ 
  MMETSP1061-20121228|2076_1 134 GKALFKKKQYLEAASTF----------------------------------TEALD 155
                 44444455555444444..................................33332 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.24
   TIGR02552  47 ldpteakywlgLaaclqalkeye 69 
                 l+   ++y  +L +c+ ++ +y 
  MMETSP1061-20121228|2076_1 232 LETKTHDYYGALVECCAMQLQYM 254
                 677889************98885 PP

  == domain 3    score: 27.4 bits;  conditional E-value: 5.7e-10
   TIGR02552  33 kyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieia 116
                 +++ A++ +q  a+l+p +a+ ++  a +l+ ++++++A++ +++a+a+d+++ ++++h+a+  +  g+ e A k+Lk ++++ 
  MMETSP1061-20121228|2076_1 438 ELDAAVTCYQQCAQLEPINAEILVKHAGVLMDANRHADALELFDRALAIDPNAVDALLHRANLRMIQGNMEAATKDLKQCVKLR 521
                 67899***************************************************************************9875 PP

  == domain 4    score: 15.0 bits;  conditional E-value: 3.9e-06
   TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeys 123
                 l+Laa+l al++ + A ++ ++a  +d+d+ +++ + +e l+  ++  +A++ +++a e++ +++  +
  MMETSP1061-20121228|2076_1 529 LRLAAVLTALQQSDAAKEQLDAAERADPDSSDVLSYKGELLFTQNDLVRAKREFERASELDPSNP--T 594
                 78**********************************************************99988..3 PP

  == domain 5    score: 8.9 bits;  conditional E-value: 0.00031
   TIGR02552  68 yeeAiaaYalaaaldlddprpvyhaaecllalg 100
                   +A   +++a  ld+++p p++ +a   l+l 
  MMETSP1061-20121228|2076_1 575 LVRAKREFERASELDPSNPTPYVNTALAVLNLP 607
                 5689999*******************8888763 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   1.3      0.42   3.4e+02     107     222 ..      28     142 ..      24     197 .. 0.54
   2 !   22.9   0.4   5.6e-09   4.6e-06     383     490 ..     411     518 ..     386     522 .. 0.88
   3 !   17.0   1.2   3.5e-07   0.00029     397     495 ..     493     591 ..     489     607 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.42
   TIGR03939 107 elyrkllqrdPknpdlllGlaltla.dagkdeeAlkalkelkerfpsdaerleala..YvlraaedsldalaaiqqalrlePdnkellkelveiltrlgapalaarlakqhpelftdee 222
                 +ly  +++ +P++p+   +   ++a   g++++  +++k+ +++++s++++++a+a   ++++a++ ++   + + a++ +P  ++  ++ v+  ++l++ +   +l k+  +lf++++
  MMETSP1061-20121228|2076_1  28 ALYLASSSSSPSSPSSSFSSSSSAAsQSGDESKGTSKAKRKASTNASANANANANAntTINASAKKVYT--TKETAAVTDNPGIHTPKRSNVTDEKELHSKIE--ELDKKGKALFKKKQ 142
                 677777777777777665554444413344455555555555555544444433330022222222222..23344455555544444444444444444443..44444444444444 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 5.6e-09
   TIGR03939 383 fgrstkapNddyleaqslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlv 490
                 +  ++ ++ ddy  + +   +++ ++ +l++A    ++ ++  P N+++ ++ a+v    +++ +A +l+++a +++p+ + a   +a++++ +++ + a + +++ v
  MMETSP1061-20121228|2076_1 411 MKIREAMKDDDYARLLEWTGMVQHWAYELDAAVTCYQQCAQLEPINAEILVKHAGVLMDANRHADALELFDRALAIDPNAVDALLHRANLRMIQGNMEAATKDLKQCV 518
                 555677889***********************************************************************************9999998887777665 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 3.5e-07
   TIGR03939 397 aqslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPe 495
                 a   +++l++ +g++++A+k l++  +  P     rl+la v  a  + ++A+++l++ae+ +pds  +   ++e+  ++++  +a++  +   +  P 
  MMETSP1061-20121228|2076_1 493 ALLHRANLRMIQGNMEAATKDLKQCVKLRPNFVMARLRLAAVLTALQQSDAAKEQLDAAERADPDSSDVLSYKGELLFTQNDLVRAKREFERASELDPS 591
                 5667899*******************************************************************************9999888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.53
# Mc/sec: 1750.72
//
Query:       MMETSP1061-20121228|2094_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.3   0.5      0.038   11.6   0.1    1.6  1  TIGR03830 CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family


Domain annotation for each model (and alignments):
>> TIGR03830  CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   9.2e-06     0.038      24      62 ..       6      44 ..       2      52 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.2e-06
   TIGR03830 24 sielelegeeCpaCgeelldeeeakensaaiaefkrkvd 62
                ++ +  ++ +Cp C+ee++d+++ ++ +    + +++ +
  MMETSP1061-20121228|2094_1  6 DTAVSSTVLKCPICNEEFVDHDHHRRHDHHHHRHHHRHH 44
                5667888999*************9999888777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 654.45
//
Query:       MMETSP1061-20121228|2097_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 381.30
//
Query:       MMETSP1061-20121228|2093_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1923.27
//
Query:       MMETSP1061-20121228|2095_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-33  111.5   0.1    1.2e-32  110.7   0.1    1.4  1  TIGR01021 rpsE_bact: ribosomal protein S5
    1.1e-15   55.5   0.1    2.3e-15   54.4   0.1    1.5  1  TIGR01020 rpsE_arch: ribosomal protein S5


Domain annotation for each model (and alignments):
>> TIGR01021  rpsE_bact: ribosomal protein S5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.1     6e-36   1.2e-32       3     154 ..     182     332 ..     180     334 .. 0.94

  Alignments for each domain:
  == domain 1    score: 110.7 bits;  conditional E-value: 6e-36
   TIGR01021   3 eleervvkvnRvskvvkGGrklsfsalvvvGdkkGkvGfGvgkakevteaikkavekakknlikvelleg.tikhevigksgaakvllkpakeGtGviaGga.vravlelaGvkdilakslGsnnpinvvratldaleklksaekvaekrgkkv 154
                 e+ e +++ +Rvsk+ +GGr +sf+alv+ G+ +G  GfGvgka e ++a++ a++ ak+n++ v+ + g t++ +++g++++ kv+l+ +++G   + G +    +l l+G+++++ak+ Gs n +nvvrat++al + +s ++va krg+++
  MMETSP1061-20121228|2095_1 182 EWGEMLIRTDRVSKMWRGGRVVSFRALVIGGNLRGCAGFGVGKAFEPEDAVEIACRMAKRNIFFVDRYRGkTLTRDLVGRQNSCKVVLRTTTNG---LRGNPlCCEILKLLGITNVVAKAHGSRNHYNVVRATFKALMTHESLDEVALKRGLRL 332
                 789***************************************************************99988******************99987...456651678********************************************9865 PP

>> TIGR01020  rpsE_arch: ribosomal protein S5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.1   1.1e-18   2.3e-15      54     198 ..     187     319 ..     169     330 .. 0.89

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 1.1e-18
   TIGR01020  54 vldvslvqkmtksGrrtrfralvvvGnkdGyvGlGkgkakevatairkaiakaklniikvrrgcGsWecklgkehsvPfkveGksGsvrvrliPaPkGvGlvagdvakkvlrlaGiedvytktkGetkttvnfakatfealkkty 198
                 ++    v km + Gr + fralv+ Gn  G  G+G+gka e   a++ a ++ak ni+ v r   +      +  ++     G++ s +v l  + +  Gl   ++  ++l+l Gi +v +k++G+ +  +n ++atf+al +  
  MMETSP1061-20121228|2095_1 187 LIRTDRVSKMWRGGRVVSFRALVIGGNLRGCAGFGVGKAFEPEDAVEIACRMAKRNIFFVDR---Y------RGKTLTRDLVGRQNSCKVVLRTTTN--GLRGNPLCCEILKLLGITNVVAKAHGS-RNHYNVVRATFKALMTHE 319
                 6777889*******************************************************...3......3456667789*********998765..6889**********************7.789**********98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1968.36
//
Query:       MMETSP1061-20121228|2103_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 367.27
//
Query:       MMETSP1061-20121228|2099_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-29   99.9   1.1    6.5e-29   99.6   0.7    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    4.8e-26   88.9   1.4    1.2e-25   87.6   0.0    2.3  3  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    3.4e-08   31.4   0.0    8.6e-08   30.1   0.0    1.6  1  TIGR01068 thioredoxin: thioredoxin
    0.00046   16.7   0.1    0.00046   16.7   0.0    2.0  2  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
    0.00083   17.6   0.0     0.0022   16.2   0.0    1.6  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
      0.001   16.5   0.0     0.0024   15.3   0.0    1.6  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
  ------ inclusion threshold ------
      0.022   11.3   1.6      0.029   10.9   1.1    1.1  1  TIGR02533 type_II_gspE: general secretory pathway protein E
      0.028   12.8   0.1      0.098   11.0   0.0    2.0  2  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
      0.048   10.5   4.7      0.064   10.0   3.2    1.1  1  TIGR00414 serS: serine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.7   1.4e-31   6.5e-29       3     196 ..      21     209 ..      19     223 .. 0.75

  Alignments for each domain:
  == domain 1    score: 99.6 bits;  conditional E-value: 1.4e-31
   TIGR01130   3 vleltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDatee..kelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqsgPaskeletvedlekllekkevvvvgvfkdldselvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkkkkeeekeekve 196
                  +elt en++++  e ++v ++F+APWCGHCk++a +++k  ++ + ++    ++++D+t+    +l+++++v+G+PtLk+   +  ++dY+G+R+   +  +  k +  ++    +v ++ +  e+++ ++ +v +++d+el+e   +++e++++  + +  + d+ + kk+e+  +e+    ++ +ee++ k+ 
  MMETSP1061-20121228|2099_1  21 AVELTVENYEEMT-EGKTVFIKFFAPWCGHCKAMAADWDKLGAAFEGHD-VALIGEIDCTSPdgDSLCEQFNVEGFPTLKWGEAS-GPEDYDGGRDFGSMKAFADKYVTKPVC---SVFKISECSEAEKASIAAVEAKSDDELMEVAHNLSERVQEAEHNFEMEVDKIQ-KKYEQLTEELNSSLDQIKEESNFKFL 209
                 5899*****9975.667899***************************99.66789*****976799***************9977.59****************999876665...56667777788888999998888888888777777777776666666555333.33333333333333333334444443 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   2.7e-28   1.2e-25       3     103 ..      26     123 ..      24     125 .. 0.89
   2 ?   -1.3   0.1       1.3   5.8e+02      47      64 ..     141     158 ..     134     166 .. 0.76
   3 ?   -2.0   0.0       2.1   9.5e+02      32      50 ..     182     200 ..     173     204 .. 0.73

  Alignments for each domain:
  == domain 1    score: 87.6 bits;  conditional E-value: 2.7e-28
   TIGR01126   3 aenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdatae..kelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefvee 103
                  en++e+   e k+v+++f+aPWCGhCk++a  ++kl+++++ ++    i+++d+t+   ++l+++f+v+gfPtlk+ ++    p+dy+G+R+  ++ +f ++
  MMETSP1061-20121228|2099_1  26 VENYEEMT--EGKTVFIKFFAPWCGHCKAMAADWDKLGAAFEGHD-VALIGEIDCTSPdgDSLCEQFNVEGFPTLKWGEASG--PEDYDGGRDFGSMKAFADK 123
                 56666655..499*****************************976.789*******9866899*************988877..9*************99887 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.3
   TIGR01126  47 eekvkiakvdataekela 64 
                  ek +ia v+a++++el+
  MMETSP1061-20121228|2099_1 141 AEKASIAAVEAKSDDELM 158
                 457899999999988776 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 2.1
   TIGR01126  32 laPeyeklakelkkeeekv 50 
                 ++ +ye+l++el+++ +++
  MMETSP1061-20121228|2099_1 182 IQKKYEQLTEELNSSLDQI 200
                 5567888888887766555 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.9e-10   8.6e-08       4      72 ..      27      97 ..      24     106 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1.9e-10
   TIGR01068  4 enfeetvassdklvlvDfwAeWCgpCkmlaPvleelakelee.kvk.vvKlnvd..eeqeiaakygirsiPtl 72
                en+ee+++   k+v + f+A+WCg Ck++a   ++l +  e+ +v+ +  ++    + +++ ++++++  Ptl
  MMETSP1061-20121228|2099_1 27 ENYEEMTEG--KTVFIKFFAPWCGHCKAMAADWDKLGAAFEGhDVAlIGEIDCTspDGDSLCEQFNVEGFPTL 97
                666666655..58**********************988765414441567776522456899999***99998 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     1e-06   0.00046     361     407 ..      25      70 ..       5     124 .. 0.72
   2 ?    0.0   0.8      0.12        54      49      98 ..     135     193 ..     110     213 .. 0.41

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1e-06
   TIGR00424 361 gienllkleerkeawlvvlyapwcpfcqameasyvelaeklagsgvk 407
                  +en   + e k  + + ++apwc  c+am a +++l + + g+ v 
  MMETSP1061-20121228|2099_1  25 TVENYEEMTEGKTVF-IKFFAPWCGHCKAMAADWDKLGAAFEGHDVA 70 
                 366666666666554.5689*****************9999888764 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.12
   TIGR00424  49 lsrrrlsvkp.lna.epkrkeslvlsaatvvaieveek...vveve....dfeklakkl 98 
                 +s+   + k  + a e+k ++ l+  a  + +  +e +   ++ev+     +e+l+++l
  MMETSP1061-20121228|2099_1 135 ISECSEAEKAsIAAvEAKSDDELMEVAHNLSERVQEAEhnfEMEVDkiqkKYEQLTEEL 193
                 33333332211222133444444444443332222211001122221111355555555 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.8e-06    0.0022       6      32 ..      43      69 ..      39      72 .. 0.93

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.8e-06
   TIGR02200  6 atswCgyCaslkrtLdkdgaeYevvdi 32
                 ++wCg C+ +    dk ga++e +d+
  MMETSP1061-20121228|2099_1 43 FAPWCGHCKAMAADWDKLGAAFEGHDV 69
                689***********************8 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.3e-06    0.0024      53      81 ..      25      53 ..       6      71 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.3e-06
   TIGR00385 53 qlltaevlkkgklvLlnvwasWCptCrae 81
                 + + e++++gk v + ++a WC+ C+a 
  MMETSP1061-20121228|2099_1 25 TVENYEEMTEGKTVFIKFFAPWCGHCKAM 53
                44556799******************986 PP

>> TIGR02533  type_II_gspE: general secretory pathway protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.1   6.3e-05     0.029      19      98 ..     139     217 ..     123     230 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.3e-05
   TIGR02533  19 eekdtlavlvsdpldlaaldevrvlvgaeveleiateseledainkvyarssseakevveeleeesadlialeldepkve 98 
                 +e+++++++  ++ +   l ev  ++ ++v+ ++ + +   d+i+k y++ ++e+++ +++++ees+ ++ l++ ++k e
  MMETSP1061-20121228|2099_1 139 SEAEKASIAAVEAKSDDELMEVAHNLSERVQEAEHNFEMEVDKIQKKYEQLTEELNSSLDQIKEESN-FKFLQQVMKKRE 217
                 35778999999999999**************99999999999*********************9998.666666555544 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00021     0.098       7      33 ..      44      70 ..      40     102 .. 0.88
   2 ?   -2.7   0.0       4.2   1.9e+03      29      47 ..     176     194 ..     173     196 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00021
   TIGR02196  7 tpwCppCkkakeyLkskgiafeeidve 33
                 pwC++Ck++ +   + g afe  dv+
  MMETSP1061-20121228|2099_1 44 APWCGHCKAMAADWDKLGAAFEGHDVA 70
                69*********************9996 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.2
   TIGR02196  29 eidvekdsaaaeellkklg 47 
                 e++v+k ++ +e+l+++l+
  MMETSP1061-20121228|2099_1 176 EMEVDKIQKKYEQLTEELN 194
                 5677788888888888766 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   3.2   0.00014     0.064      29     123 ..     143     238 ..     124     245 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00014
   TIGR00414  29 leklselddklkkllski.eelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnl.vaesvpvgkdeedn 123
                    + ++++k  ++l+++ ++l ++ +e +++++ + ++ ++k e+l++el++   +++e ++ +k l++ +++  l++p +  +e++p   d++d+
  MMETSP1061-20121228|2099_1 143 KASIAAVEAKSDDELMEVaHNLSERVQEAEHNFEMEVDKIQKKYEQLTEELNSSLDQIKEESN-FKFLQQVMKKRELSMPSMdGDEDIPDDDDDDDD 238
                 4445555555555555542567777778888888877777777999************99887.99****************667889988777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       537  (0.130912); expected 82.0 (0.02)
Passed bias filter:                      333  (0.0811799); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 737.94
//
Query:       MMETSP1061-20121228|2104_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.28
# Mc/sec: 259.43
//
Query:       MMETSP1061-20121228|2106_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.33
# Mc/sec: 523.96
//
Query:       MMETSP1061-20121228|2109_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 336.36
//
Query:       MMETSP1061-20121228|2107_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.31
# Mc/sec: 455.58
//
Query:       MMETSP1061-20121228|2105_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-14   50.5   0.6    9.5e-10   36.4   0.0    2.4  2  TIGR00357 TIGR00357: methionine-R-sulfoxide reductase


Domain annotation for each model (and alignments):
>> TIGR00357  TIGR00357: methionine-R-sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   2.3e-13   9.5e-10       4      70 ..      70     139 ..      67     174 .. 0.89
   2 !   12.0   0.1   8.6e-06     0.035      81     125 ..     230     279 ..     215     286 .. 0.70

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 2.3e-13
   TIGR00357   4 deelkkkltklqyevtq..nkgtekpftneykknk.eeGiyvditsgeplfssedkfdsgcGWPsftkpi 70 
                 ++ ++k l+ ++y++++  n+  e+p+ ++y++ + ++G + + ++g+pl+s e+kfd + GWP+f + +
  MMETSP1061-20121228|2105_1  70 KQFYQKALKSEEYDIMRglNNTLEQPYFSKYNRFFpQRGHFCCKACGNPLYSHETKFDIDDGWPAFGACV 139
                 5668999********98768899*********987478****************************9877 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 8.6e-06
   TIGR00357  81 eslgmirtevrskradahlGhvfddGP.ektG....kryCinsaalkfip 125
                 ++lg +  e++++r+++hlG v+      + G    + + +n+ a+k++ 
  MMETSP1061-20121228|2105_1 230 RALGENYSEIHCHRCKSHLGDVYVQVNsGNHGelflEHHRVNGRAIKYMH 279
                 56777889**************9654434444111134567777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1648.08
//
Query:       MMETSP1061-20121228|2110_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       378  (0.0921502); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 2507.79
//
Query:       MMETSP1061-20121228|2101_1  [L=701]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-22   76.2   0.0    1.1e-21   75.1   0.0    1.5  1  TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme
      2e-19   67.7   0.0    3.4e-19   67.0   0.0    1.3  1  TIGR00417 speE: spermidine synthase
  ------ inclusion threshold ------
      0.043   11.0   0.0        0.1    9.8   0.0    1.5  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF


Domain annotation for each model (and alignments):
>> TIGR03330  SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   8.1e-25   1.1e-21       3      92 ..     166     254 ..     165     267 .. 0.92

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 8.1e-25
   TIGR03330   3 lGkhllvdlygvdeekledeelieevlleaakaagatlvevafhkfspqGvsgvvvlaESHisiHTwpEkgyaavDvftCgdtvdpekav 92 
                 +G+hllvd+ g+d++ l+ e+++ ++++++++++g+tl++ + h + p+Gvs + vl ESH+s HTwp +g +++D+ftCg+ ++  +++
  MMETSP1061-20121228|2101_1 166 AGQHLLVDIDGLDASFLNSEARLATAMISMVDNSGLTLLSYHCHGMYPEGVSCAGVLLESHVSFHTWPTEGVITLDLFTCGS-TSLLDSM 254
                 69*******************************************************************************9.5555555 PP

>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   2.5e-22   3.4e-19      41     156 ..     338     467 ..     312     513 .. 0.76

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 2.5e-22
   TIGR00417  41 vlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpkls.galddervdlk...idDGvkflrdt..........ekkfDviivDstdP 156
                  + +Dgv++       + he  +h p++ah+ pk+v++ G G G+  rev+kh+ vee+t+v  D++++++sk+ylp+ s +++  +  +++    d  v+f+ d              +Dv +vD  d 
  MMETSP1061-20121228|2101_1 338 QVYMDGVLKSNSVGQAAAHESSVHPPMIAHDSPKRVVIFGAGLGASTREVLKHRGVEEVTVVGADKAMVDFSKEYLPEWSdCSYASQNGETVscfDDSRVNFVYDQtpsewvasynGPSYDVALVDLFDL 467
                 5679**************************************************************************9888886544333211023346666665555555555556788888887664 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   7.3e-05       0.1      22      55 ..     371     403 ..     368     410 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 7.3e-05
   TIGR02356  22 skvliiGaGgLgsavaeylaaaGvgtiaivDdDe 55 
                 ++v+i+GaG Lg++  e+l   Gv ++++v  D+
  MMETSP1061-20121228|2101_1 371 KRVVIFGAG-LGASTREVLKHRGVEEVTVVGADK 403
                 69*****97.*******************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (701 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.46
# Mc/sec: 2011.40
//
Query:       MMETSP1061-20121228|2112_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 625.51
//
Query:       MMETSP1061-20121228|2114_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1347.20
//
Query:       MMETSP1061-20121228|2115_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 491.96
//
Query:       MMETSP1061-20121228|2121_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 401.25
//
Query:       MMETSP1061-20121228|2120_1  [L=820]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (820 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 3491.32
//
Query:       MMETSP1061-20121228|2118_1  [L=855]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-07   26.8   0.3    1.2e-05   21.6   0.1    2.3  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.9e-05   20.4   1.3    0.00025   16.7   0.1    2.6  3  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    7.3e-05   19.0   0.1    0.00015   18.0   0.1    1.4  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
     0.0022   14.7   0.0       0.21    8.1   0.0    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
  ------ inclusion threshold ------
      0.011   12.0   0.0      0.092    9.0   0.0    2.0  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ


Domain annotation for each model (and alignments):
>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   1.4e-08   1.2e-05      42     111 ..     230     315 ..     194     347 .. 0.70
   2 !    2.8   0.0    0.0072       5.9     339     374 ..     699     734 ..     694     743 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.4e-08
   TIGR03817  42 araaelahaGehvvvatgtasGkslayllPvlsalaed......p........ratalylaPtkalaadqlravkelee..rdvra 111
                 ++  + +    ++++a++t sGkslayllP l++ +++      p          ++  ++Pt  la    r+v +l    ++v+a
  MMETSP1061-20121228|2118_1 230 VSKKNQTSVNGNAILAAATGSGKSLAYLLPFLTSAQSQkrkkvsPkrgaltnaLGRIWIMTPTMELAYQLQRTVDQLVVgtSNVHA 315
                 333344444557899*****************999988555555155555544456677899999999999999988764444444 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0072
   TIGR03817 339 lelGvdisGldavviaGfPGtvaslwqqaGraGrrg 374
                 l  G+d+  + +vv+ G P   as+   aGr+ r+ 
  MMETSP1061-20121228|2118_1 699 LARGLDLPHVRTVVLMGVPSNAASYAHLAGRTARQN 734
                 66799***************************9986 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1     3e-07   0.00025      16      86 ..     225     307 ..     219     328 .. 0.77
   2 ?   -2.7   0.0      0.23   1.9e+02     173     214 ..     551     594 ..     548     610 .. 0.60
   3 ?    1.5   0.0     0.012        10     314     355 ..     701     742 ..     694     769 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3e-07
   TIGR04121  16 afQkevleaaee..gesglliapTGaGKTlavflpslielaakekpk.........kglkvlyi.tPLkaLakdieraleapi 86 
                 ++Q  v ++ ++  + +++l a+TG+GK la  lp l+++++++++k         ++l  ++i tP   La +++r +++ +
  MMETSP1061-20121228|2118_1 225 SYQALVSKKNQTsvNGNAILAAATGSGKSLAYLLPFLTSAQSQKRKKvspkrgaltNALGRIWImTPTMELAYQLQRTVDQLV 307
                 666666655544115678**********************9444444445566666889899987999999999999998876 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.23
   TIGR04121 173 pelrvvglsATvgn.leeaaevllgeek.eekaklvkakekkal 214
                  +l++v  sATvg  l++   ++++  + +++a+l++a+ + ++
  MMETSP1061-20121228|2118_1 551 STLQIVCASATVGRaLRKQLMYIVRVPStDKAAALISADVRTKK 594
                 67999*******97345555566665554666777666433332 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.012
   TIGR04121 314 LGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskill 355
                  G+D  +v +v+ +G p ++a     +GR++ +  +   i+l
  MMETSP1061-20121228|2118_1 701 RGLDLPHVRTVVLMGVPSNAASYAHLAGRTARQNTAGGCITL 742
                 699**************************9987776665554 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.8e-07   0.00015     264     294 ..     239     269 ..     226     283 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.8e-07
   TIGR01407 264 eekslIeAatGtGKtlgYLLpalylakeekp 294
                 + ++++ AatG+GK+l+YLLp l++a+++k+
  MMETSP1061-20121228|2118_1 239 NGNAILAAATGSGKSLAYLLPFLTSAQSQKR 269
                 5678899******************995554 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0043       3.5      28      50 ..     241     263 ..     223     268 .. 0.82
   2 !    8.1   0.0   0.00025      0.21     289     331 ..     702     744 ..     694     758 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0043
   TIGR00614  28 dalvvmatGgGksLCyqlpavvs 50 
                 +a++  atG GksL y lp ++s
  MMETSP1061-20121228|2118_1 241 NAILAAATGSGKSLAYLLPFLTS 263
                 5677889***********98765 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00025
   TIGR00614 289 GinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfya 331
                 G++ p vR v+ +++p +  sY   +GR  R +    c+ +  
  MMETSP1061-20121228|2118_1 702 GLDLPHVRTVVLMGVPSNAASYAHLAGRTARQNTAGGCITLCW 744
                 8999******************************999987654 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.049        40      32      51 ..     243     262 ..     224     266 .. 0.79
   2 ?    9.0   0.0   0.00011     0.092     279     328 ..     694     743 ..     621     757 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.049
   TIGR01389  32 lavlPtGGGkslCYqvPaLl 51 
                 +    tG Gksl Y +P L 
  MMETSP1061-20121228|2118_1 243 ILAAATGSGKSLAYLLPFLT 262
                 34457************885 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00011
   TIGR01389 279 vatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeailly 328
                 +       G+d + vR v+ + +P n  sy   aGR  R   +  +i+l 
  MMETSP1061-20121228|2118_1 694 IVKERLARGLDLPHVRTVVLMGVPSNAASYAHLAGRTARQNTAGGCITLC 743
                 4445556799*******************************999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.47
# Mc/sec: 2401.08
//
Query:       MMETSP1061-20121228|2124_1  [L=1173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:00.53
# Mc/sec: 2921.19
//
Query:       MMETSP1061-20121228|2128_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.17s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 384.49
//
Query:       MMETSP1061-20121228|2127_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 1224.86
//
Query:       MMETSP1061-20121228|2129_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.26s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1748.86
//
Query:       MMETSP1061-20121228|2130_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   14.2   0.8       0.88    6.7   0.0    2.4  3  TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit
  ------ inclusion threshold ------
      0.018   12.1   0.0      0.024   11.7   0.0    1.1  1  TIGR03275 methan_mark_8: putative methanogenesis marker protein 8
      0.027   11.8   0.2        2.1    5.6   0.0    2.3  2  TIGR04109 heme_ox_HugZ: heme oxygenase, HugZ family


Domain annotation for each model (and alignments):
>> TIGR02852  spore_dpaB: dipicolinic acid synthetase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.21   2.9e+02     110     130 ..       6      26 ..       4      31 .. 0.78
   2 !    6.7   0.0   0.00064      0.88     105     131 ..      26      52 ..      15      56 .. 0.80
   3 !    6.2   0.0   0.00093       1.3     109     132 ..      55      78 ..      50      83 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.21
   TIGR02852 110 katlrnnkPvvlaistndalG 130
                    l+n++  vla   n +  
  MMETSP1061-20121228|2130_1   6 SKDLQNDRDFVLAAVNNHGRA 26 
                 567999999999999888755 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00064
   TIGR02852 105 vlmaakatlrnnkPvvlaistndalGl 131
                  l  a  +l+n+k vvla   nd+  l
  MMETSP1061-20121228|2130_1  26 ALEYASEELKNDKDVVLAAVNNDGWSL 52 
                 56668889***************9876 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.00093
   TIGR02852 109 akatlrnnkPvvlaistndalGln 132
                 a  +lrnnk vvla    ++l l+
  MMETSP1061-20121228|2130_1  55 ASKELRNNKDVVLAAVNKNGLALE 78 
                 6678**********9999999875 PP

>> TIGR03275  methan_mark_8: putative methanogenesis marker protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.8e-05     0.024     157     222 ..       7      73 ..       2      82 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.8e-05
   TIGR03275 157 kaielgykkiavtvadaedakeirelekeldldvliiavhvtGideeda.eelvkyaDivtsCaska 222
                 k ++ +++ +  +v++   a e  + e + d+dv+++av   G + + a +el ++ D+v +   k+
  MMETSP1061-20121228|2130_1   7 KDLQNDRDFVLAAVNNHGRALEYASEELKNDKDVVLAAVNNDGWSLKYAsKELRNNKDVVLAAVNKN 73 
                 556789999999**********999999*****************88652789999****9988775 PP

>> TIGR04109  heme_ox_HugZ: heme oxygenase, HugZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0021       2.9      23      49 ..      33      58 ..      20      62 .. 0.84
   2 ?    5.6   0.0    0.0015       2.1      24      47 ..      59      82 ..      56     130 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0021
   TIGR04109 23 kveevtnvllksvdedgldlkvngqek 49
                + ++ ++v+l +v++dg +lk+ ++ +
  MMETSP1061-20121228|2130_1 33 ELKNDKDVVLAAVNNDGWSLKYASK-E 58
                568999***************9844.3 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0015
   TIGR04109 24 veevtnvllksvdedgldlkvngq 47
                 ++ ++v+l +v+++gl l++ ++
  MMETSP1061-20121228|2130_1 59 LRNNKDVVLAAVNKNGLALEFADR 82
                56889*************998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 774.72
//
Query:       MMETSP1061-20121228|2132_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-34  117.4   0.1    1.9e-16   58.0   0.0    2.2  2  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    3.2e-16   57.0   0.0    3.3e-09   34.1   0.1    2.5  2  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
    0.00056   17.5   0.0     0.0042   14.7   0.0    2.3  3  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   2.5e-19   3.4e-16      91     170 ..       1      86 [.       1      97 [. 0.94
   2 !   58.0   0.0   1.4e-19   1.9e-16     195     251 ..     240     297 ..     232     319 .. 0.82

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 2.5e-19
   TIGR00005  91 lvvhptggyekntvlnallahlkeel......vsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefksk 170
                 +++hp ggy+ ++++n+l++ +k++       v +l+ +hRLDr TSGl++++kt + ++  ++ + +++ kk Y a+v g+f+ k
  MMETSP1061-20121228|2132_1   1 MPIHPCGGYNMQSLVNILEKYYKNKSkddvsdVKKLYTIHRLDRLTSGLVIFGKTSSVAKAYSKCIMNRSSKKIYLARVAGKFPLK 86 
                 689********************77799*9999*************************************************9854 PP

  == domain 2    score: 58.0 bits;  conditional E-value: 1.4e-19
   TIGR00005 195 gkeavTvfkvler..dekaslvelkllTGRtHQiRVHlqylghplagDplYgnksvkgk 251
                  k+a + f v+++  + + +l+ ++l TGRtHQ+R Hlq+l+h++a+Dp Yg  + +  
  MMETSP1061-20121228|2132_1 240 VKPAHSSFGVVSYdeSTDSTLLICRLYTGRTHQLRLHLQHLQHSIANDPNYGG-DIWYG 297
                 79***********555678*********************************8.55543 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.1   2.4e-12   3.3e-09      40      98 ..      32      91 ..      24     115 .. 0.91
   2 !   20.1   0.0   4.5e-08   6.2e-05     112     167 ..     235     292 ..     198     300 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 2.4e-12
   TIGR01621 40 gvekvylvhrldkvtsGilllalnaesaselsrlfaekkikktyla.lsdkkpkkkqGli 98
                +v+k+y +hrld++tsG++++ + +  a ++s+   +++ kk+yla ++ k p k +Gl 
  MMETSP1061-20121228|2132_1 32 DVKKLYTIHRLDRLTSGLVIFGKTSSVAKAYSKCIMNRSSKKIYLArVAGKFPLKCRGLK 91
                689******************************************956778899988875 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 4.5e-08
   TIGR01621 112 lvrskenpaitrfesvsiae..klrlfilkphtGkthqlrvalkslGsailGdslygk 167
                 l +++  pa + f  vs +e  +  l+i++  tG+thqlr+ l+ l  +i  d+ yg+
  MMETSP1061-20121228|2132_1 235 LYKKTVKPAHSSFGVVSYDEstDSTLLICRLYTGRTHQLRLHLQHLQHSIANDPNYGG 292
                 5556667888888888876511679*******************************97 PP

>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.1e-06    0.0042      26      75 ..      30      82 ..      17      94 .. 0.76
   2 ?   -2.3   0.0       0.5   6.9e+02      27      66 ..     143     182 ..     122     202 .. 0.63
   3 ?   -1.5   0.0       0.3   4.1e+02     107     130 ..     256     279 ..     232     285 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.1e-06
   TIGR00093 26 l.rgkklaavGRLDrdseGlllltddgelqhr....lthpekevektYlvqvegs 75
                +  +kkl+++ RLDr ++Gl+++ +   ++++    +++++   +k Yl++v+g+
  MMETSP1061-20121228|2132_1 30 VsDVKKLYTIHRLDRLTSGLVIFGKTSSVAKAyskcIMNRS--SKKIYLARVAGK 82
                44789******************887766655111155555..59*******986 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.5
   TIGR00093  27 rgkklaavGRLDrdseGlllltddgelqhrlthpekevek 66 
                 r ++ +a+     d +G  ++ d+ge +  ++++ +++  
  MMETSP1061-20121228|2132_1 143 RLRHQHALACWTEDGNGTPIFGDNGESETDMLERVFRCRH 182
                 4445555555566777777888888877777777766655 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.3
   TIGR00093 107 elktklrvtlteGrnrqvrRltaa 130
                 ++ t l   l+ Gr +q+r  +++
  MMETSP1061-20121228|2132_1 256 TDSTLLICRLYTGRTHQLRLHLQH 279
                 4455667789999*9999966555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1569.98
//
Query:       MMETSP1061-20121228|2133_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       348  (0.0848367); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1597.41
//
Query:       MMETSP1061-20121228|2136_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 223.98
//
Query:       MMETSP1061-20121228|2137_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 509.10
//
Query:       MMETSP1061-20121228|2138_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-06   23.7   0.2    6.9e-06   23.1   0.2    1.1  1  TIGR00634 recN: DNA repair protein RecN
     0.0048   14.2   0.8       0.01   13.2   0.2    1.7  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
  ------ inclusion threshold ------
       0.02   12.2   0.4      0.031   11.5   0.3    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      0.031   11.3   0.7      0.048   10.7   0.5    1.2  1  TIGR01420 pilT_fam: twitching motility protein
      0.033   11.5   0.5       0.05   10.9   0.3    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
       0.05   11.0   0.1      0.077   10.4   0.1    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      0.058    9.8   0.4      0.087    9.2   0.3    1.2  1  TIGR00955 3a01204: pigment precursor permease


Domain annotation for each model (and alignments):
>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.2   1.2e-08   6.9e-06      24      56 ..     209     242 ..     204     249 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.2e-08
   TIGR00634  24 ltvltGETGaGKsividal.elllGqradaelvR 56 
                 l  +tGETG+GKs++++ + +ll+G++a+a+++ 
  MMETSP1061-20121228|2138_1 209 LVCVTGETGSGKSLLVSKIaDLLTGGKASASMIH 242
                 6789*************9967***********96 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.69     4e+02      82     104 ..      62      85 ..      49      95 .. 0.81
   2 !   13.2   0.2   1.7e-05      0.01      26      58 ..     206     238 ..     194     248 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.69
   TIGR02323  82 rtewGlvhqnpr.GlrmevsaGan 104
                  + wG++   +r G r + s+  n
  MMETSP1061-20121228|2138_1  62 TCAWGFLPTTTRvGTRTRTSSAQN 85 
                 567999999998899999887766 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1.7e-05
   TIGR02323  26 pGevlgivGesGsGkstllkalaarlladaGev 58 
                  G+++++ Ge+GsGks l++ +a  l+  + ++
  MMETSP1061-20121228|2138_1 206 NGNLVCVTGETGSGKSLLVSKIADLLTGGKASA 238
                 5999*******************9888766555 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.3   5.2e-05     0.031      26      57 ..     205     236 ..     201     247 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.2e-05
   TIGR02315  26 kkGelvaviGlsGaGkstllrsinrlveissg 57 
                 ++G+lv v G+ G+Gks l+  i  l +  ++
  MMETSP1061-20121228|2138_1 205 SNGNLVCVTGETGSGKSLLVSKIADLLTGGKA 236
                 58*********************999875444 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.5   8.2e-05     0.048     120     146 ..     205     231 ..     200     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.2e-05
   TIGR01420 120 kkrGlilvtGptGsGKsttlAslidyi 146
                 ++  l+ vtG+tGsGKs  +  + d +
  MMETSP1061-20121228|2138_1 205 SNGNLVCVTGETGSGKSLLVSKIADLL 231
                 44569************9888777765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   8.6e-05      0.05      22      47 ..     205     230 ..     201     248 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.6e-05
   TIGR03608  22 ekGelvaivGesGsGKstlLnilgll 47 
                 ++G+lv ++Ge GsGKs l+  ++ l
  MMETSP1061-20121228|2138_1 205 SNGNLVCVTGETGSGKSLLVSKIADL 230
                 58*****************9988876 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   0.00013     0.077      22      51 ..     205     234 ..     201     247 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00013
   TIGR01277  22 eaGervailGesGaGkstllnliaGflepa 51 
                 ++G+ v + Ge+G+Gks l++ ia +l+  
  MMETSP1061-20121228|2138_1 205 SNGNLVCVTGETGSGKSLLVSKIADLLTGG 234
                 689*********************988754 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.3   0.00015     0.087      49      89 ..     205     243 ..     184     249 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00015
   TIGR00955  49 ksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnG 89 
                  +G+l+ v G  G+GK+ L++ +a   + g   ++  ++ G
  MMETSP1061-20121228|2138_1 205 SNGNLVCVTGETGSGKSLLVSKIADLLTGGKASAS--MIHG 243
                 57**********************99998877644..6666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      195  (0.0475378); expected 82.0 (0.02)
Passed Vit filter:                        77  (0.0187713); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 767.38
//
Query:       MMETSP1061-20121228|2139_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   22.0   0.0    6.2e-05   20.4   0.0    1.8  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD
     0.0021   15.9   0.0     0.0063   14.4   0.0    1.7  2  TIGR00586 mutt: mutator mutT protein


Domain annotation for each model (and alignments):
>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     3e-08   6.2e-05      40      72 ..     417     449 ..     399     454 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3e-08
   TIGR02705  40 tehkkRGlefPGGkveegetskeaaiRevleet 72 
                  +hk+  l+ PGGk+  gets e aiRe  ee 
  MMETSP1061-20121228|2139_1 417 DDHKSLQLDLPGGKRHLGETSLEGAIRETEEES 449
                 589999***********************9996 PP

>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       0.6   1.2e+03      35      52 ..     206     223 ..     201     257 .. 0.74
   2 !   14.4   0.0   3.1e-06    0.0063      27      61 ..     417     451 ..     414     462 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.6
   TIGR00586  35 efPGGkieaGetpeqavv 52 
                 e  GG +e G   +  vv
  MMETSP1061-20121228|2139_1 206 ELTGGSVEDGKIDALVVV 223
                 677888888876666555 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 3.1e-06
   TIGR00586  27 dadlanklefPGGkieaGetpeqavvrelqeevgi 61 
                 d + + +l+ PGGk   Get+ +  +re +ee ++
  MMETSP1061-20121228|2139_1 417 DDHKSLQLDLPGGKRHLGETSLEGAIRETEEESSL 451
                 56677789***********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 2025.21
//
Query:       MMETSP1061-20121228|2140_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 829.65
//
Query:       MMETSP1061-20121228|2142_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       300  (0.0731351); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 587.95
//
Query:       MMETSP1061-20121228|2144_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 955.78
//
Query:       MMETSP1061-20121228|2145_1  [L=797]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-76  254.1   0.0    1.3e-35  121.0   0.0    3.1  3  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    2.4e-10   38.1   0.6    6.2e-07   26.9   0.1    2.2  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      6e-08   29.9   0.7     0.0036   14.2   0.0    2.6  3  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00013   19.6   0.0     0.0027   15.4   0.0    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00088   16.8   0.8     0.0025   15.3   0.1    2.1  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0019   15.5   0.3     0.0041   14.3   0.2    1.6  2  TIGR00436 era: GTP-binding protein Era
     0.0026   15.2   0.2     0.0087   13.4   0.1    1.8  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
  ------ inclusion threshold ------
      0.013   12.3   0.3      0.085    9.6   0.1    2.0  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
      0.026   11.2   0.2       0.06   10.0   0.2    1.5  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF


Domain annotation for each model (and alignments):
>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00016     0.072       2      26 ..     287     311 ..     286     322 .. 0.87
   2 !  119.3   0.0   9.5e-38   4.3e-35      24     183 ..     379     554 ..     369     558 .. 0.88
   3 !  121.0   0.0   2.9e-38   1.3e-35     180     360 ..     570     761 ..     563     762 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00016
   TIGR03597   2 CiGCGaalqtedkkklgYvpksale 26 
                 C  CG+ +q+ d++k+gY+p ++++
  MMETSP1061-20121228|2145_1 287 CSACGSDFQSRDERKPGYLPPAKFD 311
                 9*******************98765 PP

  == domain 2    score: 119.3 bits;  conditional E-value: 9.5e-38
   TIGR03597  24 alekeevlCqRCFrlkhYneled........v.elkdedflnllnslsekkalvvavvDifdlegslikelkrfvkenkvllvvNKidllpksvklekikewlkkeakeeglk.....pvdillvsakkkkglkellelikkare..kkdvyvvGvtNVGKSsliNkllklnkgkk 183
                  l++++++C+RC+ l++ +++++          +l++++f+ ll+ +sek a+vva++D+fd+ gs+++el  +++en+v+l +NK dllpk+v +++i++w+++e++ +g++        + l+s k+++g+ +++++ ++ ++  + d+yvvG++N GKS+liN++l+ n++++
  MMETSP1061-20121228|2145_1 379 ELSQKKTICKRCHGLQNSGRVDEslrpgwtdEpTLSQKQFQDLLRPISEKPAVVVALIDLFDFGGSVLRELDGIAGENPVILAANKADLLPKQVGKNRIENWVRRELEYMGVQslanvGGAVRLISCKTGEGVASMMDKAQELANeiDGDIYVVGAANAGKSTLINNILSRNNKDD 554
                 46899*************99975222222212368999***********************************************************************9999544333479*****************9999887889*********************999875 PP

  == domain 3    score: 121.0 bits;  conditional E-value: 2.9e-38
   TIGR03597 180 kgkkkvittSkfpgTTldlieipldkesvllDtpGiineeqianllskkdlkkivpkkeikpktyqlkeeqtlflgglarldylkge.ktsftiyvskelkiHrtklekadelyekklgellspP...kkkekaelkelvkkeltik.....e.kedivisGlgwitvk.keeakvkvtapkevevslrkal 360
                 ++ k ++ttS+ pgTTl++i+i+l +++ l+DtpG++    i++ll++++lk++ pkk+++p t+++ +++ +++ggla+++++ ++    +t++v++e+k+H t + +ad++ ek++g++l+pP     ++++   e+ ++e++i+     e   di++ Glgwi v+ ++ ak+ + +p ++++s+r +l
  MMETSP1061-20121228|2145_1 570 NKLKGALTTSPLPGTTLKFIKIDLGDGQHLYDTPGLLVPGTITQLLTPDELKIVCPKKQVEPITFRVASGKCVLVGGLAKIEVIGDTrPFLLTFFVANEIKLHCTDSSRADSFTEKHVGTMLTPPlapGPERMKAIGEFDSNEIDIDgagwkEaAADITLTGLGWIAVTgAGRAKLRISVPRGIGISVRPPL 761
                 344557***************************************************************************9998884567899******************************98777899999999999999986444325578*************8899***************9876 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   1.4e-09   6.2e-07      40     143 ..     447     551 ..     424     570 .. 0.77
   2 !    9.3   0.0   0.00032      0.15     143     177 ..     575     609 ..     568     616 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.4e-09
   TIGR03596  40 peleelvknkprlivlnkaDladpektkkwlkyfeekgkkalavnakk..kkkvkkilkaikkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakkkv 143
                  el+ ++++ p ++  nkaDl  +++ k+ ++++ +++ + + v++ +  + +v+ i  +  + +++  +k ++   ++    + vvG  N GKStliN++++++ 
  MMETSP1061-20121228|2145_1 447 RELDGIAGENPVILAANKADLLPKQVGKNRIENWVRRELEYMGVQSLAnvGGAVRLISCKTGEGVASMMDK-AQELANEIDGDIYVVGAANAGKSTLINNILSRNN 551
                 6789999******************9988777777666666666654301455566666777777777776.45555667799******************99986 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00032
   TIGR03596 143 vakvgnkpgvTksqqwiklskeleLlDtPGilwpk 177
                 ++ +   pg T +   i+l+++ +L+DtPG+l+p 
  MMETSP1061-20121228|2145_1 575 ALTTSPLPGTTLKFIKIDLGDGQHLYDTPGLLVPG 609
                 5677888*************************985 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.9e-06    0.0036     286     349 ..     455     525 ..     427     529 .. 0.82
   2 !   13.4   0.4   1.4e-05    0.0063     178     198 ..     529     549 ..     523     552 .. 0.75
   3 ?   -4.0   0.0       2.7   1.2e+03     203     231 ..     578     603 ..     575     605 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.9e-06
   TIGR03594 286 gkalvivvNKwDlvkdekeleelkkeleeklkflkfap.......ivfiSAltgkgveklleaikevyesl 349
                 + +++++ NK Dl+ ++  ++++++ ++++l+++           +  iS++tg+gv +++++++e+++++
  MMETSP1061-20121228|2145_1 455 ENPVILAANKADLLPKQVGKNRIENWVRRELEYMGVQSlanvggaVRLISCKTGEGVASMMDKAQELANEI 525
                 579***********9999999*********9998655411122225689****************998876 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.4e-05
   TIGR03594 178 iaiiGrpNvGKStLvNallge 198
                 i ++G  N+GKStL+N++l +
  MMETSP1061-20121228|2145_1 529 IYVVGAANAGKSTLINNILSR 549
                 567888888888888888765 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 2.7
   TIGR03594 203 vsdiaGtTrDsidievevkgkkylliDTA 231
                 +s+ +GtT   i+i++   ++   l DT 
  MMETSP1061-20121228|2145_1 578 TSPLPGTTLKFIKIDLGDGQH---LYDTP 603
                 7999******99999865544...44555 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.15        68     112     140 ..     455     481 ..     431     516 .. 0.73
   2 !   15.4   0.0   5.8e-06    0.0027       4      27 ..     527     550 ..     524     561 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.15
   TIGR00231 112 gvpiilvvnKiDlkddlktkvkslfakln 140
                 + p+il++nK Dl    k+  k  ++++ 
  MMETSP1061-20121228|2145_1 455 ENPVILAANKADLLP--KQVGKNRIENWV 481
                 679*********977..555555555554 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 5.8e-06
   TIGR00231   4 ikivivGhvdvGKstLlnsllknk 27 
                   i +vG  ++GKstL+n++l ++
  MMETSP1061-20121228|2145_1 527 GDIYVVGAANAGKSTLINNILSRN 550
                 5799****************9875 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   5.5e-06    0.0025       8      43 ..     516     551 ..     509     558 .. 0.84
   2 ?   -2.0   0.0       1.2   5.3e+02      45      73 ..     576     604 ..     570     605 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.5e-06
   TIGR03598   8 aklkqlpedklpeiafaGrSNvGKSsliNaLtnrkk 43 
                  k+++l ++   +i ++G  N+GKS+liN +++r++
  MMETSP1061-20121228|2145_1 516 DKAQELANEIDGDIYVVGAANAGKSTLINNILSRNN 551
                 4567788888899*****************998875 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.2
   TIGR03598  45 artSktPGrTqlinffevneelrlvDlPG 73 
                   tS  PG T +    ++ + ++l D PG
  MMETSP1061-20121228|2145_1 576 LTTSPLPGTTLKFIKIDLGDGQHLYDTPG 604
                 578999****9999999999********9 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   9.1e-06    0.0041       3      25 ..     529     551 ..     527     579 .. 0.89
   2 ?   -2.9   0.0       1.6   7.4e+02      26      58 ..     576     605 ..     568     608 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.1e-06
   TIGR00436   3 vailGrpnvGKSTLlNkllgqki 25 
                 + ++G +n+GKSTL+N++l  ++
  MMETSP1061-20121228|2145_1 529 IYVVGAANAGKSTLINNILSRNN 551
                 789***************98775 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.6
   TIGR00436  26 sivSpkaqTTrnrisgiltegasqiifiDtPGl 58 
                 + +Sp + TT++ i+  l +g  q  + DtPGl
  MMETSP1061-20121228|2145_1 576 LTTSPLPGTTLKFIKIDLGDG--QH-LYDTPGL 605
                 568999999999988666554..44.4499997 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   1.9e-05    0.0087      89     149 ..     487     553 ..     459     616 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.9e-05
   TIGR00157  89 keqleelknlgYkvllvsvkneegleelkek...lkkris...vfaGqSGVGKSSLiNlldpevkqk 149
                    ++ l+n+g +v l+s k+ eg++++++k   l+++i     ++G +  GKS LiN+++++ ++ 
  MMETSP1061-20121228|2145_1 487 YMGVQSLANVGGAVRLISCKTGEGVASMMDKaqeLANEIDgdiYVVGAANAGKSTLINNILSRNNKD 553
                 45578999****************9999875122556553332679***************998764 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.14        64     293     319 ..     445     473 ..     442     522 .. 0.68
   2 ?    9.6   0.1   0.00019     0.085     192     212 ..     529     549 ..     517     559 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.14
   TIGR03156 293 vLeelg..aeeipvllvlNkidkleeeel 319
                 vL+el+  a e pv+l+ Nk+d+l+++  
  MMETSP1061-20121228|2145_1 445 VLRELDgiAGENPVILAANKADLLPKQVG 473
                 7777764356789*********9994433 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00019
   TIGR03156 192 valvGYTNaGKstllnaltka 212
                 + +vG  NaGKstl+n++ + 
  MMETSP1061-20121228|2145_1 529 IYVVGAANAGKSTLINNILSR 549
                 679*************99875 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.8   8.3e+02     115     130 ..     455     470 ..     406     489 .. 0.63
   2 ?   10.0   0.2   0.00013      0.06      10      30 ..     529     549 ..     522     552 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.8
   TIGR03918 115 kipvivvlnkidlkee 130
                 + pvi+++nk+dl  +
  MMETSP1061-20121228|2145_1 455 ENPVILAANKADLLPK 470
                 3466666666666555 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00013
   TIGR03918  10 ialfGrrNaGKSsliNaltgq 30 
                 i ++G  NaGKS+liN+++ +
  MMETSP1061-20121228|2145_1 529 IYVVGAANAGKSTLINNILSR 549
                 7899*************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.12s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 2504.65
//
Query:       MMETSP1061-20121228|2149_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-50  166.0  23.2    2.4e-47  157.5  11.8    2.0  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
  ------ inclusion threshold ------
      0.028   12.5   2.0       0.22    9.6   0.0    2.1  2  TIGR03932 PIA_icaD: intracellular adhesion protein D
       0.86    7.3   7.5        4.4    5.0   0.3    2.6  2  TIGR02972 TMAO_torE: trimethylamine N-oxide reductase system, TorE protein


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5  11.8   1.7e-50   2.4e-47       1     108 []      14     125 ..      14     125 .. 0.96
   2 !   12.4   0.2   2.1e-05     0.029      38      67 ..     133     162 ..     127     166 .. 0.84

  Alignments for each domain:
  == domain 1    score: 157.5 bits;  conditional E-value: 1.7e-50
   TIGR01100   1 ffgvlGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkekek....yslykgfihlgaGlavGlsglaaGlaiGivGdagv 108
                 ffg++G+++alvf+++GaayGtaksgvGi+++gv++p l++++iipvvmaG+++iyGl+vav+i+gs+ + ++    ysly+gf+hl+aGl++GlsglaaG+aiGivGdagv
  MMETSP1061-20121228|2149_1  14 FFGFMGVTSALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSIVAPQNglsqYSLYTGFAHLAAGLCCGLSGLAAGMAIGIVGDAGV 125
                 9******************************************************************9876544445*********************************98 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 2.1e-05
   TIGR01100  38 elilksiipvvmaGiiaiyGlvvavliags 67 
                 +l +  i+ +++a  +++yGl+va++++++
  MMETSP1061-20121228|2149_1 133 KLFVGMILILIFAEALGLYGLIVALILSQN 162
                 45667788899***************9875 PP

>> TIGR03932  PIA_icaD: intracellular adhesion protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00016      0.22       7      37 ..      53      83 ..      50      90 .. 0.90
   2 ?    1.9   0.4      0.04        54      11      31 ..     139     159 ..     132     167 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00016
   TIGR03932  7 ilrEivlfiislvfWlYclivvivligtlfe 37
                ++r+i+ +++++v+ +Y liv +++ g+++ 
  MMETSP1061-20121228|2149_1 53 VMRNIIPVVMAGVLGIYGLIVAVIIQGSIVA 83
                6899*********************999976 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.04
   TIGR03932  11 ivlfiislvfWlYclivvivl 31 
                 i+++i + ++ lY liv ++l
  MMETSP1061-20121228|2149_1 139 ILILIFAEALGLYGLIVALIL 159
                 667788899999999998886 PP

>> TIGR02972  TMAO_torE: trimethylamine N-oxide reductase system, TorE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.2    0.0034       4.7      21      39 ..      58      76 ..      52      81 .. 0.85
   2 ?    5.0   0.3    0.0032       4.4      27      39 ..     146     158 ..     131     164 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0034
   TIGR02972 21 FPiLsvavvggYGfivWll 39
                 P+   +v+g YG+iv ++
  MMETSP1061-20121228|2149_1 58 IPVVMAGVLGIYGLIVAVI 76
                5999999********9654 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0032
   TIGR02972  27 avvggYGfivWll 39 
                  ++g+YG+iv l+
  MMETSP1061-20121228|2149_1 146 EALGLYGLIVALI 158
                 578*******887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 826.15
//
Query:       MMETSP1061-20121228|2148_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-21   73.4   0.1    4.5e-21   73.1   0.1    1.1  1  TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF


Domain annotation for each model (and alignments):
>> TIGR02110  PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.1   1.1e-24   4.5e-21       4     224 ..      57     273 ..      54     340 .. 0.85

  Alignments for each domain:
  == domain 1    score: 73.1 bits;  conditional E-value: 1.1e-24
   TIGR02110   4 tLangLrvaLvHdpaakraAAllRVaAGShdepsawPGLAHlLEHLlFlGterfqgderLmawvqrqGGqvNAsTlerttdfFFelpaealaaGleRLcemLarPlltvedqqrEreVleAEyialsadadarreaalldalsaahplrrFraGsrdslalena..al.QqALrdFhrryYqAeqmqLwLqGPQsLeeLeeLAarfgaslaageelaqaapaaL 224
                 tL+ngLrv       a+ a   + +  GS  e     G AH+LEH+ F Gt++ +++ +L   + + GG +NA T   +t++F ++  + +   +e + ++L +  l+ ++++rEreV+  E   ++++    +e  +ld l+a  ++++ + G+   l+ e++   l    L d+  + Y+A +m+   +G    +eL eLA+++ + l +   +a+  pa  
  MMETSP1061-20121228|2148_1  57 TLSNGLRVGSETTVGAETATVGVWIDSGSRYETAENNGAAHFLEHMAFKGTQK-RTQRQLEEQIENMGGHLNAYTSREQTAYFAKVFSKDVPTAIEIISDILLNSNLEPQAIEREREVILREMEEVNKN----QEELVLDHLHA-TAFQGTALGRT-ILGSEQNirTLtRDQLVDYITTQYTAPRMVVAGAGAVDHAELCELADKHFGALSSDIGGAEYEPAVF 273
                 9**************************************************98.56778************************************************************9887665544....44457788888.78888888865.454443311441568**************************************99877776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1821.45
//
Query:       MMETSP1061-20121228|2152_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 1221.75
//
Query:       MMETSP1061-20121228|2153_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   15.3  13.3      0.012   12.6   0.6    2.5  2  TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein


Domain annotation for each model (and alignments):
>> TIGR00776  RhaT: RhaT L-rhamnose-proton symporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   3.1   8.1e-05      0.33      35     129 ..      70     159 ..      32     179 .. 0.68
   2 !   12.6   0.6   2.9e-06     0.012      52     136 ..     354     437 ..     348     442 .] 0.75

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 8.1e-05
   TIGR00776  35 tvgalilsiviailllpeftalsiflvgllsGalwalgqinqlksmrllGvSktmpistGlqLvvgtLlgvivfgewsvsistllGllallliii 129
                 t    i s++ ++++  e+   +    g++s ++w  g + ++ ++++ G+  ++++   +  +v+  +g ++f e+  s        a+++++ 
  MMETSP1061-20121228|2153_1  70 TAMCFITSWIFLLIRGEEV---TFTPWGIVSALFWVPGGVATIYAIKTAGLAIAIGVGGSFIVLVSFSWGIFFFDEHVHSRVQAC--SAIAFMLC 159
                 3334566666666666555...578889****************************99888777777899999998765544443..34444444 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.9e-06
   TIGR00776  52 eftalsiflvgllsGalwalgqinqlksmrllGvSktmpistGlqLvvgtLlgvivfgewsvsistllGllallliiiGvaltsl 136
                 +f+  +++  g   G+lw++g+   + ++++lG   +   s  + Lv+g L+g + f+e +   ++l    +  +  +G++l s 
  MMETSP1061-20121228|2153_1 354 SFHFSKMWPYGCSCGLLWSIGNFFSIVAVENLGEGIGYSASQSSMLVSG-LWGIFYFKEIEGADAILKWYASASVTALGIILLSY 437
                 5555677777888899999999999999999999888888888888765.99999999988777777666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 2011.70
//
Query:       MMETSP1061-20121228|2154_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   11.4   0.0      0.067   10.4   0.0    1.4  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family


Domain annotation for each model (and alignments):
>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.6e-05     0.067      37     113 ..     279     352 ..     259     374 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.6e-05
   TIGR01452  37 vlfvtnnstksraeyakklaklGlnsvaeelvssalvaaalleraidankkvyviGeeGlreeldekGiryvGdpse 113
                 v+ +    t     y k++ k G+   +  l +s   +a+++ +  + +kkv+++G+eG  e ld++ +r +   + 
  MMETSP1061-20121228|2154_1 279 VFRLITAGTVEEKRYEKQIHKDGIR--RAILTNSGNHTAKYFTK-EELKKKVFILGDEGECEFLDKLEMRGFAYDAR 352
                 5555555666667788888888887..677899999******99.8999**********999888888776655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1458.17
//
Query:       MMETSP1061-20121228|2156_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 2136.27
//
Query:       MMETSP1061-20121228|2155_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-13   46.8   0.0    5.3e-07   27.4   0.0    2.7  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.8e-08   32.2   0.1    9.4e-05   20.0   0.1    2.6  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    2.2e-08   31.6   2.4    1.1e-05   22.8   0.5    3.0  3  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    8.4e-07   26.4   0.1     0.0045   14.2   0.1    2.5  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    8.4e-06   23.0   0.2    0.00028   18.1   0.1    2.8  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    7.5e-05   20.1   0.0      0.022   12.0   0.0    2.1  2  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00079   15.7   0.5    0.00097   15.4   0.3    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
  ------ inclusion threshold ------
      0.015   12.7   0.2          1    6.6   0.3    2.6  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      0.018   12.3   0.9       0.14    9.3   0.5    2.5  2  TIGR02415 23BDH: acetoin reductases


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   1.2e-09   5.3e-07       1     138 [.       3     150 ..       3     155 .. 0.76
   2 !   16.3   0.0   2.9e-06    0.0013     148     187 ..     194     231 ..     188     244 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.2e-09
   TIGR01830   1 alvtGasrgiGkaiakkla.kegakvviterskeekaeelaeelkeag......vkaaavkldvsdeeevkelveevee...........elgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvg 138
                 +lvtG+++giG a+ ++la ++ ++v+++ rs+++ ++++++  ++ g      +++  ++ld s++e+v ++ ++v +           ++ ++  +vnnAGi        ++  +  +++++nL+g  +v+++ +  ++ + sGri+n++s  g
  MMETSP1061-20121228|2155_1   3 VLVTGGNQGIGFALCRQLAlEHNCHVLLSARSQQKGLDAVSKIETAIGttpgckGSVDFLELDTSSDESVAAAAAAVASgggpgsgpgpaTTTKLGAIVNNAGIG-------LNTGHTGDILNTNLHGPKRVCEHFIP-LLDETSGRIVNLGSGSG 150
                 69****************956789*****999999887776655554411112235778999**********999998622222222222566889999999996.......45567789*************99886.66779*******99666 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 2.9e-06
   TIGR01830 148 YaasKaGligltkslakElasrnitvnavaPGfietdmte 187
                 Y  sKa l   +  la+E    n+ v +v+PGfi+t+mt+
  MMETSP1061-20121228|2155_1 194 YGLSKALLACYSGLLAREH--PNLAVSCVTPGFIDTQMTA 231
                 7778888888888999996..58999*************7 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.1   2.1e-07   9.4e-05       4     138 ..       4     148 ..       2     152 .. 0.74
   2 !    9.1   0.0   0.00044       0.2     150     189 ..     194     231 ..     189     236 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.1e-07
   TIGR01829   4 lvtGglgGiGtaickrla.kdGykvvanvapneerakewlqekevegf......dvavvkadvssfeeakaavakveaelGp...........vdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissv 138
                 lvtGg +GiG a+c++la ++ ++v+ + +++++   ++ + + + g+       v +++ d ss e+ +aa a v +  Gp           +  +vnnaGi        +++ +  ++++tnl++   v +  i  +l+ + Gri+n+ s 
  MMETSP1061-20121228|2155_1   4 LVTGGNQGIGFALCRQLAlEHNCHVLLSARSQQKGLDAVSKIETAIGTtpgckgSVDFLELDTSSDESVAAAAAAVASGGGPgsgpgpatttkLGAIVNNAGIG-------LNTGHTGDILNTNLHGPKRVCEHFIP-LLDETSGRIVNLGSG 148
                 8****************83557899888887776666666655554431222226999********99999999998765532222333332377899999997.......56678899************999886.678899*****9885 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00044
   TIGR01829 150 ysaakaGliGftkalaqegakkgvtvnviaPGyiatemvk 189
                 y  +ka l  ++  la+e    +++v  ++PG+i+t+m++
  MMETSP1061-20121228|2155_1 194 YGLSKALLACYSGLLAREHP--NLAVSCVTPGFIDTQMTA 231
                 77889999999999999975..688999**********86 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.5   2.4e-08   1.1e-05       6     142 ..       3     150 ..       1     161 [. 0.72
   2 ?    0.7   0.0      0.14        62     178     199 ..     164     185 ..     152     191 .. 0.85
   3 !    6.0   0.0    0.0032       1.4     152     193 ..     194     233 ..     186     254 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2.4e-08
   TIGR03206   6 aivtgggggiggaicrrfaeegakvavldln.....aeaaekvaaairekg...gkaeavavditdrasvdaavaaaeealgp....vdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaa 142
                 ++vtgg  gig a+cr++a e     +l        ++a  k+ +ai  +    g+ + +  d ++ +sv aa aa+ ++ gp          + g  v ++ +  + ++   ++  nl g   +    ++ +++  +grivn+ s ++
  MMETSP1061-20121228|2155_1   3 VLVTGGNQGIGFALCRQLALEHNCHVLLSARsqqkgLDAVSKIETAIGTTPgckGSVDFLELDTSSDESVAAAAAAVASGGGPgsgpGPATTTKLGAIVNNAGIGLNTGHTGDILNTNLHGPKRVCEHFIP-LLDETSGRIVNLGSGSG 150
                 78*****************9987655554321122268999999999887512245677899**************9998766111134555555555555556677788888999999999888877777.55667899999988765 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.14
   TIGR03206 178 nvvcpgptdtalledvkseaek 199
                  ++c gp  t   ed+ + a++
  MMETSP1061-20121228|2155_1 164 AMLCSGPEGTCTWEDIEEHAKN 185
                 579*************999987 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0032
   TIGR03206 152 yaackgglvafsktlarelarhgitvnvvcpgptdtalledv 193
                 y   k  l ++s  lare+   +++v  v pg  dt + +  
  MMETSP1061-20121228|2155_1 194 YGLSKALLACYSGLLAREHP--NLAVSCVTPGFIDTQMTAGW 233
                 888999999*********97..688999********987765 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   9.9e-06    0.0045       1     141 [.       3     152 ..       3     160 .. 0.69
   2 !    9.7   0.0   0.00024      0.11     164     189 ..     209     232 ..     184     248 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 9.9e-06
   TIGR01831   1 vlvtgasrgigraialklaad.gfeiavhyrsdradaeesvaairaqg......gnarllkfdvadrvavrevleadiaehgayyg....vvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvm 141
                 vlvtg  +gig a+  +la +   ++ +  rs++ + +++ +  +a g      g++ +l++d +  ++v ++  a  +  g   g      +  g   ++a   l   +   +++tnl g   v +   +p++     gri+ l s sg m
  MMETSP1061-20121228|2155_1   3 VLVTGGNQGIGFALCRQLALEhNCHVLLSARSQQKGLDAVSKIETAIGttpgckGSVDFLELDTSSDESVAAAAAAVASGGGPGSGpgpaTTTKLGAIVNNAGIGLNTGHTGDILNTNLHGPKRVCEHF-IPLLDE-TSGRIVNLGSGSGPM 152
                 8*****************976256788899999988887765555555112222345678889888887776654433333333332222445567677778888888888888999999998888765.588775.568999999988855 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00024
   TIGR01831 164 avelakrkitvnciapglidtemvae 189
                 a e  + +++v c++pg+idt+m a 
  MMETSP1061-20121228|2155_1 209 ARE--HPNLAVSCVTPGFIDTQMTAG 232
                 433..34689*************875 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   6.1e-07   0.00028       4     140 ..       3     150 ..       1     160 [. 0.73
   2 ?    1.2   0.0     0.083        38     171     187 ..     213     229 ..     193     238 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 6.1e-07
   TIGR01963   4 alvtGaasGiglaiakela.aaGakvvvndle....eeaaeaaakeleea...ggevlalkadvtkeeeiadlieava...........aefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhg 140
                 +lvtG + Gig+a+ ++la ++ ++v+++  +     +a +++++++ ++    g+v  l++d ++ e++a   +ava           a+ ++l  +vnnAGi         +t +   i++ nl+++ ++ ++ +p + +   Gri+n++s  g
  MMETSP1061-20121228|2155_1   3 VLVTGGNQGIGFALCRQLAlEHNCHVLLSARSqqkgLDAVSKIETAIGTTpgcKGSVDFLELDTSSDESVAAAAAAVAsgggpgsgpgpATTTKLGAIVNNAGIGL-------NTGHTGDILNTNLHGPKRVCEHFIPLLDE-TSGRIVNLGSGSG 150
                 89****************94557899998887422222333344443332222467889999******9*9999999822222222222356678899*****975.......6777889******************9865.67******99766 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.083
   TIGR01963 171 tgitanaicPgyvrtpL 187
                  ++ + ++ Pg+++t++
  MMETSP1061-20121228|2155_1 213 PNLAVSCVTPGFIDTQM 229
                 4677899********97 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   4.9e-05     0.022       3      68 ..       3      70 ..       1     107 [. 0.71
   2 !    6.2   0.0    0.0028       1.3     164     202 ..     194     231 ..     189     240 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.9e-05
   TIGR01500  3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRnde....aLkeskaeieaevsal..svdlvsldleaak 68
                +lvtG  +G+G +l ++la    ++   + L+aR+++    a+ + +  i++ +++   svd   ld ++ +
  MMETSP1061-20121228|2155_1  3 VLVTGGNQGIGFALCRQLAL---EHNCHVLLSARSQQkgldAVSKIETAIGT-TPGCkgSVDFLELDTSSDE 70
                79****************98...7788999****986111133444444444.5554124555555555444 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0028
   TIGR01500 164 YCaskaaRdmffqvLaleekedvkvLnYapGvlDtdmqs 202
                 Y  ska    +   La e+ +++ v   +pG +Dt+m+ 
  MMETSP1061-20121228|2155_1 194 YGLSKALLACYSGLLAREH-PNLAVSCVTPGFIDTQMTA 231
                 6667888888889999999.*****************85 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   2.1e-06   0.00097     417     490 ..       3      82 ..       1     119 [. 0.70

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.1e-06
   TIGR02632 417 alvtGgasGiGrevarrlvdeGahvvl.adlda....eaaeavaaelvdkfGadkava.lkldvtdeeavkaafaevala 490
                 +lvtGg  GiG +++r+l+ e  + vl     +    +a+ +++ ++    G   +v  l+ld  ++e+v+aa a+va  
  MMETSP1061-20121228|2155_1   3 VLVTGGNQGIGFALCRQLALEHNCHVLlSARSQqkglDAVSKIETAIGTTPGCKGSVDfLELDTSSDESVAAAAAAVASG 82 
                 68*****************88776555144443111145556666777776654433359***********998888754 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.3    0.0023         1       7      47 ..       2      45 ..       1     148 [. 0.70
   2 ?    3.0   0.0     0.029        13     153     192 ..     194     231 ..     191     242 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0023
   TIGR01832  7 valvtGantGlGqgiavgla.eaGadivgvgisels..etqekv 47
                ++lvtG n+G+G +++  la e  ++++  ++s+++  ++ +k+
  MMETSP1061-20121228|2155_1  2 KVLVTGGNQGIGFALCRQLAlEHNCHVLLSARSQQKglDAVSKI 45
                579*************9999455677776666655411333344 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.029
   TIGR01832 153 ytasksavaGltkllanewakkginvnaiaPGyletnnte 192
                 y  sk  +a  + lla e+   ++ v  ++PG+++t+ t+
  MMETSP1061-20121228|2155_1 194 YGLSKALLACYSGLLAREH--PNLAVSCVTPGFIDTQMTA 231
                 6667777788888888886..578999*********9986 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   0.00031      0.14       4      47 ..       4      48 ..       2     121 .. 0.67
   2 ?   -1.8   0.0      0.81   3.7e+02     173     190 ..     215     232 ..     208     248 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00031
   TIGR02415  4 lvtGaaqGiGkaiaerLa.kdGfavavadlneetaketakelkek 47
                lvtG+ qGiG a+ ++La +   +v +    +++  +++++++ +
  MMETSP1061-20121228|2155_1  4 LVTGGNQGIGFALCRQLAlEHNCHVLLSARSQQKGLDAVSKIETA 48
                8****************9344567777766677777777777654 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.81
   TIGR02415 173 itvnayaPGivktemree 190
                  +v + +PG ++t+m++ 
  MMETSP1061-20121228|2155_1 215 LAVSCVTPGFIDTQMTAG 232
                 5688899********875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 978.07
//
Query:       MMETSP1061-20121228|2161_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.46
# Mc/sec: 281.19
//
Query:       MMETSP1061-20121228|2166_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|2162_1  [L=740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-82  275.9   0.0    1.7e-45  153.4   0.0    3.4  4  TIGR00575 dnlj: DNA ligase, NAD-dependent


Domain annotation for each model (and alignments):
>> TIGR00575  dnlj: DNA ligase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.9e-07    0.0016     178     259 ..      40     139 ..      32     148 .. 0.61
   2 ?   -2.8   0.0     0.076   3.1e+02     247     272 ..     166     191 ..     161     196 .. 0.83
   3 !  103.4   0.0   5.4e-34   2.2e-30     268     354 ..     228     314 ..     214     323 .. 0.95
   4 !  153.4   0.0   4.2e-49   1.7e-45     360     651 ..     341     729 ..     330     730 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.9e-07
   TIGR00575 178 egeklfaNpRNaaaGslrql...dpkitak.rk....lkllayglg.aegkelk......latqtealallkklgfkvseelklak...sleevleliee 259
                 ++   f NpRNaa+G+l ++   dp++ ++ r+    l+++ay+++  e+ +++        +  +  ++l+ +gf+++  ++ ++   +++++++ iee
  MMETSP1061-20121228|2162_1  40 QKIISFSNPRNAASGILLRKesdDPEEDSQsRElrslLRFYAYDVSgLEKMQAQsgdespEIDGIRIRQQLEDWGFPLALPVAITDihwDRKDMIKTIEE 139
                 44568***********988733333333221332223689999997444444444444333345566789999999987777766633344555555544 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.076
   TIGR00575 247 aksleevlelieeiekkReelpyeiD 272
                  k+++ ++++++ +e++Re+l+ e D
  MMETSP1061-20121228|2162_1 166 DKQIQPIMDYFSALEQHRENLQREDD 191
                 467999**************997766 PP

  == domain 3    score: 103.4 bits;  conditional E-value: 5.4e-34
   TIGR00575 268 pyeiDGvVvkvddlalqeeLGatskaprwaiAyKfpaeeaitklrdvevqvgrtgaitpvaklepVelaGttvsratLhNedeiekk 354
                 ++++DG V kv++ ++++ +G++ k+p+wa A+Kfpa++ +++l+d++vqvgrtga+tpva+lep e++G+tv+ratLhN   ++++
  MMETSP1061-20121228|2162_1 228 DFDVDGCVHKVSQASIKSAMGYSMKSPKWATAHKFPAQSSVSRLLDIVVQVGRTGALTPVAILEPTEIGGVTVQRATLHNFGHLQEI 314
                 799*****************************************************************************9988875 PP

  == domain 4    score: 153.4 bits;  conditional E-value: 4.2e-49
   TIGR00575 360 dtVvvskaGdvIPkvvevvkekRtaeek............eikipteCpsCgselvkleeev.......alrCtn..lnCpaqsverikhfvsrkaldieglgekviekLfeeklvrsvadLykLk...ledllelervgeksaknlleaie..kskekplerlllalgirhvGettakkLakafktleklkkasle.............................................ellkvegvgekvaesvveffskeeneellkkleelgveles.......................askekveaeeks.llagktfvltGtl.eklsrkeakeklealggkva.ssVskktdyvvagekagsKlkkAkelgikilseee 651
                 d V++++aGdvIP+vv+ ++++ + +++             ++ p++Cp C+s++   ++e+       ++rC +  l Cp ++v ++kh  sr+ald+ gl+e  i++L++++l r ++d++++     e++  l+++g ks knl +     +s   +l+r++++lgirhvG+ t++ +a++++++ ++ +a                                                 l++  g+g+++ es+ +f +++e ++  k+l +    le+                        sk+++++++++ + +g ++v+tG+l + l+r++a++  ++lg+k + +sVsk+td+vv g+k g+Kl++A elgi++++ +e
  MMETSP1061-20121228|2162_1 341 DPVLLQRAGDVIPQVVRRIQSHAKSSSTasvnedyssewiSLEPPEQCPFCSSPVSYDTSESsassvgqVIRCSGppLLCPPRAVTSLKHAFSRDALDLTGLSEARIQQLMDAELLRYPSDIFRMGdteWEKIAALPGWGGKSCKNLRDTTGtiASNGLALSRFIYSLGIRHVGKHTSELVAESYGSIGAFLEALEVaasyqeppghsngeggdsenenkdenenqkedndssqeqkwqpfpPLERKLGIGPVMIESLLAFARSDELTRATKDLANSLTILEQdvvvdsplgtdsdsgdpstdsaiGSKSNSNSNSHHrPWKGFRVVFTGSLgDGLTRSKAQDVAKQLGAKATpGSVSKSTDLVVYGDKGGKKLTQAMELGIPTIEANE 729
                 89**************9988755433221111111121113467***********8776554222222268**998889*********************************************97666899***************88765116778899***************************99999876689999***************************************************************999888888877766666788888***************9955555555555558***********95579***************9868******************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.53
# Mc/sec: 1842.87
//
Query:       MMETSP1061-20121228|2160_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1267.10
//
Query:       MMETSP1061-20121228|2168_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 1222.12
//
Query:       MMETSP1061-20121228|2165_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 1995.84
//
Query:       MMETSP1061-20121228|2169_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    6.1  21.3        1.8    5.6  14.8    1.1  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  14.8   0.00043       1.8      80     149 ..     256     321 ..     232     335 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00043
   TIGR02794  80 eqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKa 149
                 e +++  + +q+ae +rq++ e q+  ++++++  e ++ e++  + + ee+++k+++E+k + ea +  
  MMETSP1061-20121228|2169_1 256 EAASRRYQREQEAELRRQQDEEYQETLRQDQER--ERQRNEARL-EAEREEQRRKDEEERKIADEASR-L 321
                 344445555666666666666555554444333..333333332.22344677777788877777754.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       280  (0.0682594); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 1541.06
//
Query:       MMETSP1061-20121228|2173_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1799.22
//
Query:       MMETSP1061-20121228|2171_1  [L=1535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   16.1   1.0     0.0063   14.3   0.7    2.0  1  TIGR00986 3a0801s05tom22: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR00986  3a0801s05tom22: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.7   1.5e-06    0.0063      23      85 ..     677     738 ..     660     747 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.5e-06
   TIGR00986  23 eeedaedqedvdeedssdsDfeddeeetllDrivaLkdivpptkrqkiadkystttsfvkkal 85 
                 +++d+ d++d d +d++d D  +  e+ ++D +v Lk   p  ++++i ++ +t +sf+++ +
  MMETSP1061-20121228|2171_1 677 KNDDDDDNDDDDGDDEDDDDCSGSGENKFIDTLV-LKGQDPTEMKEWIFQFHRTLASFMRNFI 738
                 4455556666666666666777777899***997.9************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.62u 0.15s 00:00:00.77 Elapsed: 00:00:00.76
# Mc/sec: 2665.83
//
Query:       MMETSP1061-20121228|2178_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-50  167.9   0.2    5.3e-49  165.3   0.1    1.9  1  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B
    5.9e-37  125.2   0.0      1e-35  121.1   0.0    2.2  2  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
    8.6e-07   27.1   0.3    8.6e-07   27.1   0.2    2.5  3  TIGR01951 nusB: transcription antitermination factor NusB


Domain annotation for each model (and alignments):
>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.3   0.1   3.9e-52   5.3e-49       4     394 ..      91     528 ..      88     546 .. 0.79

  Alignments for each domain:
  == domain 1    score: 165.3 bits;  conditional E-value: 3.9e-52
   TIGR00563   4 aleillq.leqgqslsnlllelvlkkqelsdqdralltelvyGvlrrksaLdllikklvdkPlkkkpr..vvr.....llllvllqllllervParaavdeavela....kalkskglkklvngvLRrfqReeeqskdeleaevrklaeeyshPeWlvklkkaaygkaeaesiveannqkPkltLRvnslkasreelldllaee................................Gvegeksd.aedavkl..ekpiavtklpgfeeGwvtvqDasaqlvatlL.....ePknee.....tilDvCaaPGGktthilelakdqaqvvalDleehrlkrvkenleRLgltii.kveekdadkagekeevekfDRiLlDaPCsalGvirRkPDlkwlrkeadiaeLvelqkeiL.kaiaplvkkgGtLvYstCtllpeeneeqikaFlael 394
                 a+ +l++ ++++++++  +le+     +l ++dra+ + l     rr  +++++ik +  k  kk++r           l+++   + l++ vP+ aav e+ve      k++  k+  ++vn+vLR++ Re+      +++  +  ++      Wl k + + ygk+ +e ivea   + ++ + vn++  + ++   + ++e                                G     +     ++++  + + av+k p ++eG++ vqD sa l a +L     +   ee     +++D+C aPGGkt+ +  +    ++v a++   +r + +++nl+RL ++ i +v   d+++ +++   + +  +L+DaPCsa+Gv  R+PD+  lrk  d+ eL  +q+e+L +a+ + +  gG+LvY+tC+ll++e e qi+  l e+
  MMETSP1061-20121228|2178_1  91 AIFALMEsMKRKNAFAIRVLEQDPAYLKLDQRDRAFARLLLSTAERRSGQIEIVIKSFQRKEKKKNSRprLTDilvdaALRIGA-AQMLFMDVPKYAAVSETVESLrmhpKIKVPKSQISFVNAVLRNIDREG----GPILEATSTIDNV---DPWLAKQWIKQYGKETTETIVEAAMSQSPVFVTVNQIIDADDDDGGQNENEndnsvtttatrldkinerleqirdvftstddeGNPLPAELlPVGSIRIpdNLGGAVSKWPLYDEGAWWVQDVSATLPAIALfnslsDTYGEEklrdmHVVDLCSAPGGKTAQLCSMGF--GSVDAVEFSPRRSRSLHQNLKRLVMEDIcNVVVADGREYEPDITSGSVQGVLVDAPCSATGVGSRRPDV--LRKSIDMNELTTIQRELLmHAVDNILEVGGVLVYATCSLLKQEGEDQIDWLLSEK 528
                 5545555588999998888888888999******************************99888775432243310112344444.5667889************7522225666678889*************....4444444444433...46**********************************987777666665555699*********************999888874443223222244554225689********************9988766433332222333333389*************998776..************************9854267788899999999999**********************8..8***************9836888999**********************9887775 PP

>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.021        28     164     229 ..     193     259 ..     121     272 .. 0.74
   2 !  121.1   0.0   7.6e-39     1e-35      42     222 ..     342     532 ..     333     564 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.021
   TIGR00446 164 knrseedikeisklqkeLllaaidalkk.gGvlvYstCsleveeneevvdyllrkrkdvvevlalgd 229
                 ++  ++  ++++k q + + a +  +++ gG +  +t ++++ +     +++++  k+ +e ++ + 
  MMETSP1061-20121228|2178_1 193 ESLRMHPKIKVPKSQISFVNAVLRNIDReGGPILEATSTIDNVDPWLAKQWIKQYGKETTETIVEAA 259
                 445566678899999999999999997659999999***9999999999999999888888876654 PP

  == domain 2    score: 121.1 bits;  conditional E-value: 7.6e-39
   TIGR00446  42 igatpeyllGlyllqeassmlPvlalepe..........ekervlDlaaaPGgkttqisallkneGaivanevsksRvkvLianinRlGvl.nvavinvDgRkfgavvlk..fDriLlDaPCsgeGvirkdksrkknrseedikeisklqkeLllaaida.lkkgGvlvYstCsleveeneevvdyllrkrkdvv 222
                 +++ p y  G + +q++s+ lP +al+ +           ++ v+Dl+ aPGgkt q+  +    G++ a+e+s  R ++L++n++Rl +  +  v+++DgR+++  ++   +  +L+DaPCs +Gv  + +++   r++ d+ e+++ q+eLl+ a+d  l+ gGvlvY+tCsl ++e e  +d+ll ++   +
  MMETSP1061-20121228|2178_1 342 VSKWPLYDEGAWWVQDVSATLPAIALFNSlsdtygeeklRDMHVVDLCSAPGGKTAQLCSM--GFGSVDAVEFSPRRSRSLHQNLKRLVMEdICNVVVADGREYEPDITSgsVQGVLVDAPCSATGVGSRRPDV--LRKSIDMNELTTIQRELLMHAVDNiLEVGGVLVYATCSLLKQEGEDQIDWLLSEKGCNE 532
                 567788999*****************97666667765666899***************987..68***********************98725689********876655579****************99999..78999*****************972566***********************98875544 PP

>> TIGR01951  nusB: transcription antitermination factor NusB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.2   6.3e-10   8.6e-07      10     129 ..      92     220 ..      85     221 .. 0.73
   2 ?   -1.7   0.1      0.52   7.2e+02      18      63 ..     260     306 ..     247     315 .. 0.45
   3 ?   -1.2   0.0      0.37   5.1e+02      67      90 ..     476     499 ..     472     504 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 6.3e-10
   TIGR01951  10 lqalyqlelagen.veeileelleekeleeedreyakelvrgvlenqeeidelieehl.kdwkle...rLakvd.raiLrlavyEllyrkdvpkkvainEavelakkf....sdekspkFvNgvLdkvak 129
                 + al++ + +++  +  +le+  +  +l++ dr++a+ l++ + +++ +i+ +i+++  k+ k +   rL+ +   a Lr++++ +l++ dvpk  a++E+ve  +        +++ +FvN+vL+++ +
  MMETSP1061-20121228|2178_1  92 IFALMESMKRKNAfAIRVLEQDPAYLKLDQRDRAFARLLLSTAERRSGQIEIVIKSFQrKEKKKNsrpRLTDILvDAALRIGAAQMLFM-DVPKYAAVSETVESLRMHpkikVPKSQISFVNAVLRNIDR 220
                 44444444444433444555555556788*************************998864443322237877652689***********.*************8877733345567789*******9965 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.52
   TIGR01951  18 lagenveeileelleekele.eedreyakelvrgvlenqeeidelie 63 
                 +++++v  +++++ + ++ +  ++++   + v+ ++++ ++i+e +e
  MMETSP1061-20121228|2178_1 260 MSQSPVFVTVNQIIDADDDDgGQNENENDNSVTTTATRLDKINERLE 306
                 45554444444444433333333333333333334444444433333 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.37
   TIGR01951  67 kdwklerLakvdraiLrlavyEll 90 
                 k+ ++++L++++r +L  av  +l
  MMETSP1061-20121228|2178_1 476 KSIDMNELTTIQRELLMHAVDNIL 499
                 566899999999999999986666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.48
# Mc/sec: 1581.12
//
Query:       MMETSP1061-20121228|2182_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.17
# Mc/sec: 729.82
//
Query:       MMETSP1061-20121228|2181_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   14.3   4.5     0.0039   13.7   3.1    1.2  1  TIGR01651 CobT: cobaltochelatase, CobT subunit
  ------ inclusion threshold ------
        1.8    6.8   8.8       0.61    8.3   1.1    2.5  2  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   3.1   1.9e-06    0.0039     157     277 ..     347     470 ..     314     514 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.9e-06
   TIGR01651 157 lvdllrefieekaakdldrlsaaiddqqafarvvrellaslelaeelgdd.eesedeedtdddqpre...deqeeegeeeee.gdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaetp 277
                  +dl +  + +k ++  d +   + d+  +a v ++ +a   lae+ + + +++edeed++d++ +     e +e+    e+   +  +   ++   ++++s ++++ + d+d+ +d+++e  +t 
  MMETSP1061-20121228|2181_1 347 TMDLTKLCVSKKEKAVYDLVGGILYDDGDYAVVLKNQVAADALAEKKAAKpTPEEDEEDEEDEEDQTwilMEPDENLRLSESfVLDFLTGSGNK-DTDDKDSDDKDSDDNDNDGSDDDSQE-ENTC 470
                 5789999999999999999999***********************9988776666666555554443112455555444333033333333333.23334444444444444444444333.3344 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   1.1    0.0003      0.61      63      92 ..     383     411 ..     370     419 .. 0.48
   2 ?    1.9   0.6     0.029        60      73      98 ..     445     471 ..     434     476 .. 0.43

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0003
   TIGR03685  63 aaaaaaaaaaeaaeeekeeeeeeeeekeee 92 
                  +aa a a+++aa+ + ee+ ee+ee+ee+
  MMETSP1061-20121228|2181_1 383 QVAADALAEKKAAKPTPEED-EEDEEDEED 411
                 33444444443333333332.222222222 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.029
   TIGR03685  73 eaaeeek.eeeeeeeeekeeeeeeale 98 
                 +++++++ ++++++  +++++ee++  
  MMETSP1061-20121228|2181_1 445 KDSDDKDsDDNDNDGSDDDSQEENTCG 471
                 222222202222334444555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1738.96
//
Query:       MMETSP1061-20121228|2184_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1032.96
//
Query:       MMETSP1061-20121228|2188_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 899.93
//
Query:       MMETSP1061-20121228|2192_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 909.26
//
Query:       MMETSP1061-20121228|2189_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 1150.94
//
Query:       MMETSP1061-20121228|2190_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 2311.81
//
Query:       MMETSP1061-20121228|2191_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1461.78
//
Query:       MMETSP1061-20121228|2193_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 2855.76
//
Query:       MMETSP1061-20121228|2195_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 985.52
//
Query:       MMETSP1061-20121228|2196_1  [L=916]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.8    3.2  11.8          4    2.7   8.2    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   8.2   0.00098         4     927    1003 ..     314     383 ..     266     398 .. 0.54

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.00098
   TIGR00927  927 egeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeen 1003
                   ++e+ee++ + e  +  tg +  ++ n+++  +d++G + +g +d  d +++++++++       +++++++++e 
  MMETSP1061-20121228|2196_1  314 FRSEQEERRVERERREWTTGMKTKESSNETKNDDDDNGDNSDGRNDNNDNDNDNDNDND-------DDDDDDDDSER 383 
                  33333333333333344444444333333333333333333333333333333333333.......22222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (916 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.56
# Mc/sec: 2158.96
//
Query:       MMETSP1061-20121228|2194_1  [L=735]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    3.9  13.5     0.0053   13.2   0.8    2.3  3  TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB


Domain annotation for each model (and alignments):
>> TIGR02538  type_IV_pilB: type IV-A pilus assembly ATPase PilB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.8   1.3e-06    0.0053     111     203 ..      53     152 ..      45     176 .. 0.68
   2 ?   -3.8   0.4      0.18   7.5e+02     128     190 ..     330     389 ..     308     397 .. 0.43
   3 ?   -1.0   0.2     0.026   1.1e+02     145     189 ..     563     604 ..     541     616 .. 0.52

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.3e-06
   TIGR02538 111 kfatklevevvvveedkleaaiekylaeseseakeleeedlgeeeeedlsaisdeeedeeeedeeed.....daPvvkfvnkilldairkgasDi..hfe 203
                  f   +e e+++ +   l++a +k  +++++ ++ + +e++++++++d ++ +d+e+++++++++++     d  +v++++ +++ airk   D+  h+ 
  MMETSP1061-20121228|2194_1  53 DFIRYIEAEMLLEKLRVLRTARRKRDHRKAQRERGIVDENENDNDDNDDDDDDDDETKQKKKNSNREedpigDVHIVQHIHLLFVRAIRKFRGDLslHLQ 152
                 56666777777777788888888877777777777776666666666665555555555555555552355566789************99988622444 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.18
   TIGR02538 128 leaaiekylaeseseakeleeedlgeeeeedlsaisdeeedeeeedeeeddaPvvkfvnkill 190
                 +++a+ +  ++ e + + l e+ + + +++ +s+ sd+++   ++++++++   +  v ++l 
  MMETSP1061-20121228|2194_1 330 IARAMYQRNKQVEVQVQVLGEQGEPSAKRARTSSDSDNDS---DNNNNNNNNKYMDPVISVLE 389
                 4444444444444444444433323233332322222222...22222223333333334444 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.026
   TIGR02538 145 eleeedlgeeeeedlsaisdeeedeeeedeeeddaPvvkfvnkil 189
                 e +  +  ++++++ ++ +d+e+de++++ +++++ +   ++k+l
  MMETSP1061-20121228|2194_1 563 EKN--T-ASKDTDNDDDDNDDEDDEDDDKGTDNETALFEILQKLL 604
                 222..1.11222222222222223334444455666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.43
# Mc/sec: 2256.09
//
Query:       MMETSP1061-20121228|2198_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1678.90
//
Query:       MMETSP1061-20121228|2197_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1511.28
//
Query:       MMETSP1061-20121228|2199_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 1531.77
//
Query:       MMETSP1061-20121228|2202_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    3.9   6.5        1.6    4.0   4.5    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   4.5    0.0004       1.6     966     992 ..      39      65 ..       8      68 .] 0.51

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0004
   TIGR00927 966 dgeggsdGGdseeeeeeeeeeeeeeee 992
                 +   + +G ds+ e+e+e+e+e+e+e+
  MMETSP1061-20121228|2202_1  39 KRHRELNGSDSDSENENENENENENEN 65 
                 223344555555555444443333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|2201_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   18.3  16.6    0.00039   17.9  11.5    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9  11.5   9.4e-08   0.00039      67     290 ..     155     379 ..     119     388 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 9.4e-08
   TIGR00817  67 lllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGva........lasltelsfnllgflsamisniefvar...nifsKkiltkk...sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvfl 290
                   lp a+ +t+   +   sl+ va+ +  + k+ + i  +++ kf++g+e+p   y+   +i +Gva        + s+ ++    l f+   i+  +f+++   +i+           ++d+ +++ ++   ++++ +   f+   ++++  efl ++ +    +++t    a+       q   f ++++  p+ + v  + + ++ I++S+++f+  is    +G++l  + v  
  MMETSP1061-20121228|2201_1 155 SFLPCALSNTLSSWSQYASLKYVAFPVQTVFKSSKIIPVMMMGKFLKGNEYPFGQYIEAFLITVGVAifslttktSNSDASTETKGLIFMVMYICCDSFTSQwqdKIYQQ-----YgrsNVDQYQMMLCVNSCAIVITTAGLFVSGDIPVVY-EFLSTNPVALYYNIITAITSATG------QLFIFYTIKEFGPIVFTVIMTTRQLFSITISCIIFGHAISGKSMMGAVLV-FSVIF 379
                 5799999**************************9999999999************************6655553333333333333334444454444444322244444.....15559**********99999999999999999****9.99999555555555554444444......7778899***************************************9985.44444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1595.87
//
Query:       MMETSP1061-20121228|2203_1  [L=1138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-10   37.3   0.0    5.3e-10   35.6   0.0    1.6  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0     0.022        91       5      52 ..     855     905 ..     853     909 .. 0.77
   2 !   35.6   0.0   1.3e-13   5.3e-10      99     238 ..    1001    1129 ..     989    1134 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.022
   TIGR03903   5 kvaikllRedaa...eeerlvaRFrReialCarLshPnivaLlDsGeaedg 52 
                  va+k+l   a      +     F  ei+l + ++hPni   +    ++++
  MMETSP1061-20121228|2203_1 855 PVAVKVLTGSAQnthIAKSILEEFNAEINLLKGMRHPNICLYMGACMTPPN 905
                 58999998876644334456789****************988877777765 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 1.3e-13
   TIGR03903   99 GvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdv.slPsaiaghpLgevLRkalnkdvrqRaasae 238 
                   v+hRDLk  n+++   d++ + kv DFG++ L ++++      +t+     G+ ++ aPe L + +   k+D+Y++G+iv e L  +   +G +  +     L  ++   +P++     L +++++ ++k++ +R   ae
  MMETSP1061-20121228|2203_1 1001 PVLHRDLKSANLLL---DESYTTKVCDFGLSRLKAQARS-----MTA---NCGTVQWMAPEVLANRSYDEKADVYSFGIIVWELLSRECPYEGMTAIQCALAVLNRDKRpEIPKWCP-PGLHALIKSCTKKNPSERPSFAE 1129
                  599*********99...5667889*********988887.....444...57*******************************************9999999998776426999975.46999999999999999987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.66
# Mc/sec: 2275.81
//
Query:       MMETSP1061-20121228|2205_1  [L=951]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-18   63.8  12.2    1.1e-16   58.2   0.4    2.1  2  TIGR00815 sulP: sulfate permease


Domain annotation for each model (and alignments):
>> TIGR00815  sulP: sulfate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   3.6   1.1e-05     0.045      77     135 ..     217     280 ..     152     292 .. 0.75
   2 !   58.2   0.4   2.8e-20   1.1e-16     254     516 ..     392     674 ..     305     717 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 1.1e-05
   TIGR00815  77 llgkvvaevlkkakedvdaikiattltlla......GivqvllGllrlGflveflskavisGFmt 135
                  +++++a+ + +  + ++   + ttl+ll+      G+v+vl+G ++l+  v fl+ +v+ G+++
  MMETSP1061-20121228|2205_1 217 NMANTIANRMIDDGN-TEIEILSTTLALLCsgtallGLVLVLMGKFKLADAVSFLPMPVVGGYLA 280
                 234444443333333.57888999999987777777***************************87 PP

  == domain 2    score: 58.2 bits;  conditional E-value: 2.8e-20
   TIGR00815 254 ldgellsalapdaiaialvgllesiaiaksfarmkgykvdanqElvaiGiaNiigsffscypatgslsrsavkakagcktalsavvtaivvllvllvlapllllipkavlaaiiivavrg.lvdlkelyklwk.vsklDvvvllvtvflvvftsieiGllvgvalSlallllriakpka.klLgrveeaevle.sikeypkal....tppgvlvyrvdgplyfanaerlkdrllkrie............deesareakrd............rlkvvildfsavaqlDtsgiha 516
                 + ++l+ +++p+ + + +v    s +   ++a   g  +d n+El  +Gi+N + +++ +++ + ++s+s   +++g++ +  +++  i  + +++   ++l   p   l++ +i +  + +  ++ l++ ++ v  ++  ++  t+++  ++ i+ G+l+gv++++   +l +a++ + + + + ++a   + ++k +++ +      p ++ +++ g l+f ++  ++++++k++                       d              k+v+l++  v++lD+s+   
  MMETSP1061-20121228|2205_1 392 VRWDLVVEIIPTWFGMVFVVSFASCLDVAAIAIDMGQPLDTNKELATVGICNFMSGITLGFTGSYIFSQSIFMYRTGVHDRCIGIMIMIAYMYIVVSPVNILEVAPLFFLGSTLIFIGYDlM--FEWLWEVRHqVFLSEYFIVWFTFLSIHVVGINFGILIGVLIAICDQILTTAQSTGvNRIEKRSRAVYTKgDAKLLHE-KgycsYAPKIVSLEIIGNLFFGSSLSMLNQIYKELGlardehptsdaeA---------DtdvgasirfpptCPKFVVLNLMGVTHLDASATRG 674
                 56778888888888888877777777777788888999*******************************************************999999****************9999844..5557777652567788888889999999*****************99999985431445444444444453333333.2455589*****************************7775444444330.........2556666666666779***************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.41
# Mc/sec: 3061.50
//
Query:       MMETSP1061-20121228|2206_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.5e-100  333.1  27.9   5.7e-100  332.8  19.3    1.1  1  TIGR00886 2A0108: nitrite transporter
    4.4e-17   59.9  24.1    6.2e-17   59.4  16.7    1.2  1  TIGR00893 2A0114: D-galactonate transporter
    6.7e-08   29.8   8.9    6.7e-08   29.8   6.2    1.9  2  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    1.1e-07   29.1  20.4    1.1e-07   29.1  14.2    2.1  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
      3e-05   20.9   4.1      3e-05   20.9   2.8    2.5  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family


Domain annotation for each model (and alignments):
>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.8  19.3    7e-103  5.7e-100       2     368 .]      71     432 ..      70     432 .. 0.93

  Alignments for each domain:
  == domain 1    score: 332.8 bits;  conditional E-value: 7e-103
   TIGR00886   2 aLflswlafflsFlvWfalspLvvqiikedlgLskaqlallvavpvlatavlRiilgflvdkfGpRkttallllllaiPllllalavssfsellllrlliGiaGasFvislamisefFpkkevGtAlglaaGlGNlGggvaqlvmp....aiieallkgagqpakkawrvalvlvpalillliallvfvvvadtppgksaeaklsvksallslekealaevlkvlkeketwilallYivtFGselgvssilaallkdqfglskveagayasllallgllaRplGGllsDklgg.....arkllvlfllvamgaalvvlglvkesseslavavvlfvvlflfvglgnGstFalvpvvfrratgavsGlvgaiGnlGg 368
                 a+++sw +ff++F++Wfa+sp+++  i++dl+Ls + +++++++ v++t+++R++lg+++dk+G R+ +a++l+l +iP++++++++ s ++l+llrl+iG aG++Fv++++++s++F  ++vGtA++l++G+GNlGggv+qlv+     ++ + ++ g   ++ kawr+   + pa+++++++++++ + +d+p+g+ a+ k + +  +  +e+ a+  + + + + +twil+++Y+++FG+el+++++ a ++kd+f l++ +a+a+as++++l+++aR lGG+ sD  +      +r ++ +++lva ga+++v++ +    +sl  a++++v+++lfv++++Gst+ +vp+v++  tga++G+vga+Gn+G+
  MMETSP1061-20121228|2206_1  71 AFHCSWWGFFVAFFIWFAISPILS-EIRDDLKLSDQAIWTSSITSVAGTIFMRVVLGPACDKWGARIPMAVVLVLCSIPTACTGFVN-SGTGLALLRLFIGCAGGTFVMCQYWTSRMFAAEVVGTANALVGGWGNLGGGVTQLVVGaglfPLCKLFFDG---DVSKAWRTVS-IFPAVLAVFTGVMIYKISDDCPKGNYADLKRHGS--M--QERSAASFFRQGCCNFNTWILFVQYACCFGTELTMNNAAALYFKDKFDLNTETAAAFASIFGWLNIFARGLGGYCSDWANAncgmrGRLWVQTVCLVAEGALVLVFAQT----QSLVSAILVMVFFSLFVQAAEGSTYGIVPYVDPPSTGAIAGIVGAGGNTGA 432
                 8***********************.668***********************************************************.*********************************************************98777788855554...6779****99.9************************776666644..1..2222333345778899****************************************************************99************************885....49***********************************************97 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4  16.7   7.6e-20   6.2e-17      15     392 ..      91     463 ..      78     468 .. 0.82

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 7.6e-20
   TIGR00893  15 iAavtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs...........WqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlva.skiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalaliga 392
                    +++++dL+ls++++ ++     +g +++ ++ g ++d+ Ga++ +av++vl ++ t+ ++f+ + ++l++lR  +G+a + ++ +    ++  F a+  +ta+++      lg+ + + +vg  l  +            W++v i+ +vla++ gv+i+k+  d p+    + ++ k   +g     +++++    + + +++   + ++++l++ +++   +  +++  + ly k+++ l++++a+ +as+ + + + +  lgg+ sd++      +  +  +  +++++  +l+ +++ ++    a+l++v  + f +++   +  +++ ++++ + g+  G++ + Gn++++++ i +  ++     fa++   + a+a++++
  MMETSP1061-20121228|2206_1  91 PILSEIRDDLKLSDQAIWTSSITSVAGTIFMRVVLGPACDKWGARIPMAVVLVLCSIPTACTGFVNSGTGLALLRLFIGCAGGTFVMCQ-YWTSRMFAAEVVGTANALVGGWGNLGGGVTQLVVGAGLFPLCklffdgdvskaWRTVSIFPAVLAVFTGVMIYKISDDCPK---GNYADLK--RHGS----MQERS----AASFFRQGCCNFNTWILFVQYACCFGTELTMNNAAALYFKDKFDLNTETAAAFASIFGWLNIFARGLGGYCSDWANAN-CGMRGRLWVQTVCLVAEGALVLVFAQTQsLVSAILVMVFFSLFVQAAEGSTYGIVP-YVDPPSTGAIAGIVGAGGNTGAVCFSIGFRQLDYKNA-FAIMGFAALAAAFFSM 463
                 55578*********99977777777889999**************************************************99988876.578899************99999999999998888777766678889********************************99...3333333..3333....33344....567899********************************************************************9888.58888888888887777777767664442455566666666666666777777777.67788889999***************99988876555.4333333333333333 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   6.2   8.2e-11   6.7e-08       6     119 ..      64     176 ..      59     256 .. 0.69
   2 ?   -4.5   2.2       2.2   1.8e+03     310     347 ..     366     403 ..     306     463 .. 0.58

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 8.2e-11
   TIGR00891   6 ltrdqwnafsaaylgylldafdfflvalvlaevaeefdrttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyG 119
                 l+r +  af  ++ g+ ++ f +f ++ +l+e+ +  +++ + +       ++   +  ++lG   D+ g r+p+ + +vl s+ t +++f ++ + l  +rl iG + g  + 
  MMETSP1061-20121228|2206_1  64 LSRPHMMAFHCSWWGFFVAFFIWFAISPILSEIRDDLKLSDQAIWTSSITSVAGTIFMRVVLGPACDKWGARIPMAVVLVLCSIPTACTGFVNSGTGLALLRLFIGCAGG-TFV 176
                 6777889******************************99877664333334556677889**********************************************9844.333 PP

  == domain 2    score: -4.5 bits;  conditional E-value: 2.2
   TIGR00891 310 alllgqllivPvfals..aekavLglglfllqllvqGvwG 347
                  +l+++  +v vfa +     a+L +   +  l+vq + G
  MMETSP1061-20121228|2206_1 366 VCLVAEGALVLVFAQTqsLVSAILVMV--FFSLFVQAAEG 403
                 233333344445655521344555555..33344444433 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1  14.2   1.3e-10   1.1e-07      18     359 ..      93     432 ..      76     439 .. 0.75
   2 !    7.8   6.5   0.00038      0.31      15     170 ..     309     468 ..     294     487 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.3e-10
   TIGR00881  18 lpelqeeiglsktdlGlllsafsiaYgi.skfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllai....allls......whvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeedkekkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDk..lfkgrraplavifmaliivsllvywlivaanklvvlillfvlGflvyGpilligvaaselapkkaiGtaaglvglfaylgg 359
                 l e++++++ls + +   +s  s+a +i  ++v g + D+ +ar+ +a+ L+l++i +   gf++s + l++l+++ G + g+ +++c+    + f  +  Gt+ a+     n+gg++   +v +++    +l+++      w+ v i+p+++a+  ++++ ++  d p+    + ++  r+           +e     +++++   n + w++ + +   + + + +++ + lY +++  l+ e+a ++ ++f +  +    l G+ sD      g r+ l v  ++l+  ++lv+    +++ ++ +++++ + ++v      +  ++   + +   G+ ag+vg  ++ g+
  MMETSP1061-20121228|2206_1  93 LSEIRDDLKLSDQAI-WTSSITSVAGTIfMRVVLGPACDKWGARIPMAVVLVLCSIPTACTGFVNSGTGLALLRLFIGCAGGT-FVMCQYWTSRMFAAEVVGTANALVGGWGNLGGGVTQLVVGAGLfplcKLFFDgdvskaWRTVSIFPAVLAVFTGVMIYKISDDCPKG---NYADLKRHGS--------MQE-RSAASFFRQGCCNFNTWILFVQYACCFGTELTMNNAAALYFKDKFDLNTETAAAFASIFGWLNIFARGLGGYCSDWanANCGMRGRLWVQTVCLVAEGALVLVFAQTQSLVSAILVMVFFSLFVQAAEGSTYGIV-PYVDPPSTGAIAGIVGAGGNTGA 432
                 566666666666666.3445556666643799**********************************************99886.667776999999*************99******99988877653333444432222338889*********9999999988888764...3455555544........223.3456788888899**************************************************************643334678999999999999999999997777755555555555555544333333332.33333445666666666665555 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00038
   TIGR00881  15 alalpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvfl.......aigLilvaivnlflgfssslwvli.allalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaiall..lswhvvfivpgiiaiivslillll 170
                 ++a+ + +++++l+ +     +s f ++  +++ + g+ sD ++a   +        + L++ ++  l+++  +sl++ i ++++++ ++q++  ++ g  ++ ++++   G + +i   + n g         +++++l   +  +++ ++++ a  +s+++l+ 
  MMETSP1061-20121228|2206_1 309 NAAALYFKDKFDLNTETAAAFASIFGWLNIFARGLGGYCSDWANANCGMrgrlwvqTVCLVAEGALVLVFAQTQSLVSAIlVMVFFSLFVQAAEGSTYG--IVPYVDPPSTGAIAGIVGAGGNTGAVCFS----IGFRQLdyKNAFAIMGFAALAAAFFSMFILIK 468
                 3455578899999999999999999****************9999765511111115666666666677777778876550555666777999999888..9999*************999999888877....44444310333344677777777788877765 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   2.8   3.7e-08     3e-05     256     395 ..      76     214 ..      45     217 .. 0.75
   2 !    3.9   2.6    0.0054       4.4     235     373 ..     273     419 ..     250     439 .. 0.59

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 3.7e-08
   TIGR00895 256 wllyflllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilag 395
                 w ++f+  ++ +++   l  +  ++  s +   +  +   +G ++  ++lg + d+ g +  +a++l+l ++     ++ ++s t+l+ll +++G  + g  ++    +++++++++ +t+ + + g G lg+ +  +++g
  MMETSP1061-20121228|2206_1  76 WWGFFVAFFIWFAISPILSEIRDDLKLSDQAIWTSSITSVAGTIFMRVVLGPACDKWGARiPMAVVLVLCSIPTACTGF-VNSGTGLALLRLFIGC-AGGTFVMCQYWTSRMFAAEVVGTANALVGGWGNLGGGVTQLVVG 214
                 5666666666666655555555555555555555555566788888899999999999997777888888887777777.8999999999999994.57788888888889999999999999999999999998888887 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0054
   TIGR00895 235 kkrsvvkllfkgklakatllLwllyflllvvvYlltsWlP.kLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.......vlalllllaavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYptaiRa 373
                 ++rs+ +   +g  +++t +L++ y++   +   +++    +   +   +++ aa++  ++    +++  l g+ +d  + +        + ++ l+a   +vlv+++++s   ++l++v++ lfv++a ++ +++ + + p+ + a
  MMETSP1061-20121228|2206_1 273 QERSAASFFRQGCCNFNTWILFVQYACCFGTELTMNNAAAlYFKDKFDLNTETAAAFASIFGWLNIFARGLGGYCSDWANANcgmrgrlWVQTVCLVAEGALVLVFAQTQSLVSAILVMVFFSLFVQAAEGSTYGIVPYVDPPSTGA 419
                 46777777777777888888888877766665555554443333333344444444444444444444444444444433332000112233344444444455555688888888899999**************99888876544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 1797.98
//
Query:       MMETSP1061-20121228|2207_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-12   43.5   1.8    1.5e-06   24.7   0.1    2.2  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    1.2e-11   41.5   0.2    1.5e-05   21.3   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.6e-07   28.3   0.3    0.00044   17.0   0.1    2.7  3  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.7e-07   27.2   0.3     0.0053   12.3   0.1    3.2  3  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
     0.0011   15.0   0.0     0.0023   14.0   0.0    1.4  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
     0.0021   15.0   1.0      0.019   11.9   0.1    2.6  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   2.2e-09   1.5e-06     225     272 ..     445     492 ..     399     497 .. 0.78
   2 !   17.9   0.1   2.6e-07   0.00018     280     358 ..     521     599 ..     504     606 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.2e-09
   TIGR01389 225 ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFle 272
                 +  +++ +s ++ve +++aL ++g++a++Yha +s ++R+e++++F +
  MMETSP1061-20121228|2207_1 445 EKTMVFLNSVDDVEGVHQALVQRGVNAVKYHAKMSLNERSENLDRFRR 492
                 445899****************************************86 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 2.6e-07
   TIGR01389 280 atvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlka.eaillyseaDlallkrlieeseasedrkqieskkLd 358
                  t     G+d + v  v+ l+  +n+ s+    GR GR G+++  +i++y+e++ +l + +++e+ea+++r q e + +d
  MMETSP1061-20121228|2207_1 521 CTDLASRGLDVPGVTAVVQLQFSGNVVSHLHRMGRCGRAGQRTgRGIVFYDEQEAELVE-VVQEAEAQQERMQLEGQEVD 599
                 555556799*******************************986379999****999986.67778999999999988776 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.2e-08   1.5e-05      25     103 ..     111     216 ..      96     230 .. 0.73
   2 !   18.1   0.0   1.9e-07   0.00013     324     377 ..     510     563 ..     448     575 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.2e-08
   TIGR03817  25 vvaaleaaGieapwqhqaraael.......ahaG.....ehvvvatgtasGkslayllPvlsalaedp...............ratalylaPtkalaadqlravke 103
                 + ++le+ G+++p q qa+a +        a++G     ++v + + t sGk+layllP+l+++ +++                a+++ l P k l +  lr+   
  MMETSP1061-20121228|2207_1 111 LLERLEKLGLTQPTQIQAKAFDKilgkdddATEGsrlwsNDVTIGAETGSGKTLAYLLPLLDTILQEKaesaasgngglpsydYARVIVLVPNKELVQQVLRMAVP 216
                 5677788888888888887754322222226666222224799*********************9994445555556666666999*********99998887655 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 1.9e-07
   TIGR03817 324 alkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqda 377
                    dG + ++ +t+    G+d+ G+ avv   f G v s   ++Gr+Gr+gq++
  MMETSP1061-20121228|2207_1 510 DDYDGAVPALICTDLASRGLDVPGVTAVVQLQFSGNVVSHLHRMGRCGRAGQRT 563
                 45689999*******************************************986 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.22   1.5e+02      26      47 ..     149     170 ..     144     173 .. 0.82
   2 !   17.0   0.1   6.4e-07   0.00044     203     274 ..     413     492 ..     399     497 .. 0.83
   3 !    8.0   0.0   0.00033      0.22     288     349 ..     527     589 ..     515     601 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.22
   TIGR00614  26 grdalvvmatGgGksLCyqlpa 47 
                  +d+ +   tG Gk L y lp 
  MMETSP1061-20121228|2207_1 149 SNDVTIGAETGSGKTLAYLLPL 170
                 668888889*********9985 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 6.4e-07
   TIGR00614 203 yeveekkskiledllkfiv.........kefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflr 274
                 y+ve kk + +e l +++             kg+  +++ +s  +ve v + L ++g++a  Yha ++ ++r+e   +f r
  MMETSP1061-20121228|2207_1 413 YQVETKK-ERMERLAEMLLteydagannDGLKGEKTMVFLNSVDDVEGVHQALVQRGVNAVKYHAKMSLNERSENLDRFRR 492
                 6777777.6667777766656666666556788889************************************998888875 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.00033
   TIGR00614 288 mGinkpdvRfvihyslpksiesYYqesGRaGRDglks.ecvlfyapaDvallrrllveekdek 349
                  G++ p v  v+  + + ++ s+   +GR GR g ++ + ++fy+ ++  l++ + + e +++
  MMETSP1061-20121228|2207_1 527 RGLDVPGVTAVVQLQFSGNVVSHLHRMGRCGRAGQRTgRGIVFYDEQEAELVEVVQEAEAQQE 589
                 59999****************************987537999**9998877654444333333 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00013     0.091      32      59 ..     153     180 ..     145     188 .. 0.81
   2 !    2.5   0.0    0.0071       4.9     114     153 ..     287     326 ..     283     330 .. 0.91
   3 !   12.3   0.1   7.7e-06    0.0053     300     380 ..     513     595 ..     509     604 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00013
   TIGR04121  32 lliapTGaGKTlavflpslielaakekp 59 
                  + a TG+GKTla  lp l  +++++++
  MMETSP1061-20121228|2207_1 153 TIGAETGSGKTLAYLLPLLDTILQEKAE 180
                 5789***************999955544 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0071
   TIGR04121 114 ppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLl 153
                 p di++ Tp  l  l   ++  +lf+d++++vvDE   Ll
  MMETSP1061-20121228|2207_1 287 PVDIVVSTPAALGPLGLPPKFIDLFADVQTLVVDEADMLL 326
                 679********************************88776 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 7.7e-06
   TIGR04121 300 agklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepsk.illvptnalEllEaaaareavkeg.evee 380
                 +g + a++cT     G+D   v  v+q+  + +v   l R+GR + + +++ + i++   +  El+E+    ea +e+ ++e+
  MMETSP1061-20121228|2207_1 513 DGAVPALICTDLASRGLDVPGVTAVVQLQFSGNVVSHLHRMGRCGRAGQRTGRgIVFYDEQEAELVEVVQEAEAQQERmQLEG 595
                 5778899**************************************99999998577889999*****9888888776514454 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.3e-06    0.0023     265     288 ..     150     173 ..     141     182 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.3e-06
   TIGR01407 265 ekslIeAatGtGKtlgYLLpalyl 288
                 +++ I A tG+GKtl+YLLp+l  
  MMETSP1061-20121228|2207_1 150 NDVTIGAETGSGKTLAYLLPLLDT 173
                 6789****************9865 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.1        72       3      29 ..     153     179 ..     151     183 .. 0.79
   2 !   11.9   0.1   2.8e-05     0.019     156     276 ..     362     495 ..     356     593 .. 0.61

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.1
   TIGR01587   3 vieAPtGyGKteaallwalklikkqka 29 
                  i A tG+GKt a ll +l+ i ++ka
  MMETSP1061-20121228|2207_1 153 TIGAETGSGKTLAYLLPLLDTILQEKA 179
                 68899******9999988887766666 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 2.8e-05
   TIGR01587 156 vkillmsAtlp....kllkeylekielv.eenealdlke......ekrfenqrisliekdkleeisslerl.lealk........kekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkk 276
                  +++   Atlp    k ++ yle   ++ +  e+ ++++           ++  + +++ k+e ++ l ++ l +++        k++k ++++N+Vd+   + q+l   + +   + +H++++ ++r +      +++++
  MMETSP1061-20121228|2207_1 362 TQHVFCAATLPdvglKSVNAYLERKFPYaKRIETGNMHNakhyglS----QATKWYQVETKKERMERLAEMlLTEYDaganndglKGEKTMVFLNSVDDVEGVHQALVQRGVN--AVKYHAKMSLNERSEN-LDRFRRYSN 495
                 5677888999988885555555443333023333343443333331....3333444445555555555554555541111122256789******************99887..788**********998.444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 2082.85
//
Query:       MMETSP1061-20121228|2208_1  [L=1473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-07   27.8  12.5    0.00032   17.7   0.8    2.8  3  TIGR00155 pqiA_fam: integral membrane protein, PqiA family


Domain annotation for each model (and alignments):
>> TIGR00155  pqiA_fam: integral membrane protein, PqiA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1     0.067   2.7e+02     100     138 ..     874     912 ..     864     920 .. 0.67
   2 !   16.9   0.6   1.3e-07   0.00055      90     165 ..    1005    1083 ..     974    1107 .. 0.77
   3 !   17.7   0.8   7.8e-08   0.00032     102     175 ..    1263    1336 ..    1244    1345 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.067
   TIGR00155 100 aitgtlvllcvvvvPiilvllilllvlakelqvklrevl 138
                  +t++l+l+ vv + +il+++++ + ++ +   + r  l
  MMETSP1061-20121228|2208_1 874 SSTTFLMLVGVVSLALILLVAVIAFAVRCITRRRHRRWL 912
                 566677777777777777777777776666665555555 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.3e-07
   TIGR00155   90 giwklakegyaitgtlvllcvvvvPiilvllilllvlake..lqvklrevll.vlerlkeWvmldiylvgvgvaivkvr 165 
                      + + g + ++ l+l++  v P +  l  l l+++ +  +++  r  +l  l rl +W m+di++  v +a ++v 
  MMETSP1061-20121228|2208_1 1005 STIDIWNAGGKELAILMLIFSGVWPYTKQLITLSLWFTPTswVSISRRGSILiWLDRLAKWSMIDIFVLIVCLAAFRVS 1083
                  5555666677788899999999999999999999998754226666665444389999999999999988888888775 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 7.8e-08
   TIGR00155  102 tgtlvllcvvvvPiilvllilllvlakelqvklrevllvl.erlkeWvmldiylvgvgvaivkvreyasievgvs 175 
                   +++++l +++vPii  +++l  ++   ++ k r +l+vl e l++W  +++y++++ v + ++   +s  v+++
  MMETSP1061-20121228|2208_1 1263 FSVIFILTILLVPIIQSIALLGNWFIP-MTTKQRRKLIVLnEILQAWQYAEVYIIAIFVGSWQLGSLSSFMVNSY 1336
                  345566777889999999888889876.55677777776615689****************99999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.14s 00:00:00.74 Elapsed: 00:00:01.00
# Mc/sec: 1944.20
//
Query:       MMETSP1061-20121228|2210_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1344.20
//
Query:       MMETSP1061-20121228|2211_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 2100.83
//
Query:       MMETSP1061-20121228|2209_1  [L=1208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       446  (0.108727); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.02u 0.18s 00:00:01.20 Elapsed: 00:00:00.90
# Mc/sec: 1771.59
//
Query:       MMETSP1061-20121228|2212_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.9   0.0      0.037   10.7   0.0    1.6  1  TIGR04130 FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase


Domain annotation for each model (and alignments):
>> TIGR04130  FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.1e-06     0.037     101     229 ..     144     268 ..     124     282 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.1e-06
   TIGR04130 101 vlgtenvleaaianevkrvvclst....dkavypinamgiskammekvlvaksrnvdsskt.vicgtrygnvmasrgsviplfvdlikagkpltitdpnmtrfmmtledavdlvlyafehgnngdifvqkapaa 229
                  lgt +v+ a  a++v r+vcls+      ++ p  +  +   m+   + a  r++ +  t v+ g+      +s  s   l   l++    lt ++p+  r         d vl   +hg    if+ k  aa
  MMETSP1061-20121228|2212_1 144 ALGTRKVIGAMTAKKVPRLVCLSSfgigKDCMKPSFIKVMWGIMLRTSMRAVRRDLTAMETaVVEGSTSSSTSSSSSSSSDLDYLLVR-PVGLTPSEPE--RG------FCDRVLSKHDHGGRLHIFMSKVDAA 268
                 69********************973332345666666666677888889999999887766244455555555555554444443333.2334444443..32......3466666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 1077.32
//
Query:       MMETSP1061-20121228|2213_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.09s 00:00:00.27 Elapsed: 00:00:00.45
# Mc/sec: 821.27
//
Query:       MMETSP1061-20121228|2214_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.52
# Mc/sec: 1680.32
//
Query:       MMETSP1061-20121228|2218_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 1022.92
//
Query:       MMETSP1061-20121228|2215_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 1994.50
//
Query:       MMETSP1061-20121228|2216_1  [L=1231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-25   85.9   0.0    2.7e-19   67.4   0.0    2.2  2  TIGR00266 TIGR00266: TIGR00266 family protein


Domain annotation for each model (and alignments):
>> TIGR00266  TIGR00266: TIGR00266 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.4e-07    0.0014      12      45 ..     759     792 ..     750     832 .. 0.71
   2 !   67.4   0.0   6.7e-23   2.7e-19      67     204 ..     870    1014 ..     864    1029 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.4e-07
   TIGR00266  12 svleltLkpgeevlvetgalvsmdrsvelktelk 45 
                  ++ +tL+pge++ +e+g+++ m ++v +kt l 
  MMETSP1061-20121228|2216_1 759 QIATITLRPGERLRAESGSMIFMTEGVTMKTTLA 792
                 5789*************************99873 PP

  == domain 2    score: 67.4 bits;  conditional E-value: 6.7e-23
   TIGR00266   67 taeqsegslqLapalpGdiirlle..tekgillqsgaflass.egveidtkfagl..ktffadeglFlLklqgkGdlflssyGaleqls..vneslvvdtdhivaFedtLdykvskqvdglkgdvlsGkGl.vaefkGkGkvylqs 204 
                  t  ++ g++ L+  +p  i +l      +++++q gaflass ++v i+++f+      ff+++g  l +l+g+G + +   Gal  ++    e l+v ++ ivaFe+t+ y v+  + g++  +++G+Gl v++++G G+++lq 
  MMETSP1061-20121228|2216_1  870 TRTKGSGTVALGTDFPSKILKLSLgdHGGSLVAQKGAFLASSnPSVTIEMEFTRTmtAGFFGGQGFVLQRLVGNGTVLVKAGGALFTRElsEGEVLRVTSGSIVAFEPTVLYDVQT-MPGIRNAMFGGEGLfVTTLTGPGRIWLQG 1014
                  4458999**************6551145679*********8625788888887541156**************************98873144679********************.7************94568*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.64
# Mc/sec: 2538.73
//
Query:       MMETSP1061-20121228|2220_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-30  103.2   0.0    4.2e-30  102.7   0.0    1.1  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.0     1e-33   4.2e-30      35     374 ..     147     494 ..     129     549 .. 0.72

  Alignments for each domain:
  == domain 1    score: 102.7 bits;  conditional E-value: 1e-33
   TIGR00860  35 klldellkn.....YdarvRPvafggkpvtVsinlilasiskvdeknmdytvniwlrqeWtDerLqyneee....skgvtkvrled.......esiWvPDillanekdarfheitkknvlvrisknGevlysirltltlaCpmd.lknfPlDvQnCslkleSygYttddiklelkeq.eavqvdeslfielpefellgvlktrseteetstgeYse....lklslvlrRrilYYllqlyiPsillvilslvsFwlnkdasgarvsLgittlLtlttfssgvreslPavs.yvkaIdvylvvclvfvflalleyalVnyvvhkksakkk.....rklllerlarllkkkeegeekrrpaleakelssle 374
                 ++ d +l++     Y+  v P  +  + v+V ++l+ + i +++e +   +++++l+  W+D rL++n e+     + +++             +iWvPD+ l n ++  +h  +  ++ + +  +G+v +     +t+ C+ + l   P+D   C+l + S    t     +++e+ + v ++ +l +  + fe+    ++ +   e +t+ Ys     + +++ +rR    Y+ ++++P ill+ ls++ F+l++  +g+r ++ +++ L +  + ++ ++  P +s     +d +++  +  v   ++  + V +v++ ++++k        ++ +++ r++ ++++gee++ p +++  +++  
  MMETSP1061-20121228|2220_1 147 NIHDVVLGDrktnnYNSAVPPITNFDERVDVDVHLQYEGITEISEAQGIASLYVTLNLRWRDPRLAWNIEDfdtcANVIET----YtgydqetAQIWVPDLDLTNRVE-GLHSFDDAKATIFS--DGTVHWHRMGGMTALCSFNgLASIPFDILGCQLLFHSA---T----RDWNENiNYVIAVPEL-MAFGPFEVAY--NEWQPIPEKATQGYSVddelIFYNFYFRRAHMQYTQNIVVPTILLTYLSFLTFLLDMR-VGERLGFVMALALVVVAQQIVTSDMTP-ISdRRLWLDKFVAWSFYWVLFGVVQSVGVGFVYYIREDRKAenedsTIKVIRSILRRTSQERDGEETH-PLADTSDINEGG 494
                 44444444444444**********999********************************************6554222222....123345669***********987.57888888998888..*****************987***************994...3....3567776778888898.999****986..566667788888886333338899**********************************.*******99999988777666665555.66477789*****************9999665554333333334442333333334444444444444.555544433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.10s 00:00:00.41 Elapsed: 00:00:00.96
# Mc/sec: 834.56
//
Query:       MMETSP1061-20121228|2223_1  [L=930]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-64  214.3  12.8    3.9e-63  211.6   2.1    2.4  2  TIGR02350 prok_dnaK: chaperone protein DnaK
    4.5e-47  158.7   2.5    4.5e-47  158.7   1.7    2.0  2  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    0.00041   17.3   0.0    0.00076   16.4   0.0    1.4  1  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.6   2.1   2.8e-66   3.9e-63       2     574 ..      32     653 ..      31     674 .. 0.75
   2 !    7.7   3.1   0.00015      0.21     489     569 ..     655     735 ..     646     764 .. 0.77

  Alignments for each domain:
  == domain 1    score: 211.6 bits;  conditional E-value: 2.8e-66
   TIGR02350   2 iiGidLGttnsvvavleggep.vvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle....eveeeakkvp....ykvveaenevkvevedkeytpeeisaeiLqklkkdaeaylGek......vteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdeki.lvfdlGGGtfdvsilelg...............dgvfevkstaGdtkLGGddfdekiidylaeefkke......egidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge..vkdvlLldvtPLsLgi..........etlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaa.dnkslgrfeLtgippaPr.......GvpqievtfdidanGilsvsakdkatgkeqsititassglseeeier....mvkeaeanaeedkkkkeevearneadsliyqaektlkeagdkleeeekekiekaveelkealkeedvee 574
                 i+G+dLG     va+++ g p ++++n   +r t  ++ f + g rl G+ a       + +t v +  ++Gr+ +    +v ++ ++ p    y+ +++    +++  ++ +tpee++a++L++ ++   +y  ek      +t+ v+tvP++  +++rqa  da k+ G++vl +i+e ta+aL +G+dk+ ++ ki l ++lG  ++ vsi+++                 g++ev+    d++LGG  +d+++++y+a++f+++      ++ d+++   a+ +++  a+k k  Ls+++e  i +  +  d    ++l+++++r++feel+edl +r+ +p+ +al+ a+++ +eid + + GG  r+P+vq  + +++g ke    +n de +a+Gaa  g+ ++    v+ v L+d+ P+ +gi          e   g ++++ + n  i +kk+  f+  +d   + +  v  G  ++ +   k+l r+++tg+    +       G+p++ + f++ + Gi s    + a +++ +++++   +++++e         +e  + + +d k  +++ ++ e++s      +t++e+  k +++e +k +k+ve+ k+++++++++ 
  MMETSP1061-20121228|2223_1  32 ILGVDLGSVYMKVALVQRGAPlEIVTNMHSKRKTEQMILFDQ-GTRLYGSDANSLLARKATKTPVGMSVMLGRDEDhpavKVLSD-RHFPltptYNETRKGLYLSIDGGKQVHTPEELTAMVLHYAEEFTHHYGKEKghtygdITDCVLTVPSFATQSERQALLDAAKLGGFKVLGLIDENTASALNFGMDKTFEEPKIyLFYNLGASALQVSIIKFHhyevpeskyskktkkVGSIEVLGKGWDSTLGGLAYDNRLVEYMADSFNHKwrhargHEKDIRDVPRAMTKIRLQANKVKHVLSANQEIPIHMDSLYDD----ISLSMHISRSQFEELCEDLSKRASDPIIDALTSANVTLEEIDAIEMLGGGMRVPKVQSSLTSVLGdKELGMHINSDESMALGAAFYGANISTAfrVRQVGLVDINPFPIGIslenlekddsEESWGKTATIFKANGKIGVKKTIAFTHEADVLCSLDY-VEPGPDQIPEgAKKELQRYKITGVGDFAKemeekglGKPKVSLQFELSSSGITSLVKAEAAVEEKYTVEVE--VEIDDDEESSppsdEKEEESTSKGKDDKGSDDATKKGESESKN----DTVSEESSKEKNDEAKKKTKMVEKEKKKVHKKSLQV 653
                 89************999888857999*************976.5*****************************999654433333.333300013333333355566667789************9999888754433335559*************************************************9998884678************9876666666666555434689***************************98753333225679999999**********************9999987655....6799999**********************************************************99**********************9987779*********9999885544444444344588899*************************996.667776666515789******99854332222333399**************9965555554444444333..3333333222000012222223334444444444444444433....333333333333333333333333333333333222 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00015
   TIGR02350 489 sititassglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeagdkleeeekekiekaveelkealke 569
                 s ++ +  +ls++ ie    +  + ae dk++    ea+n+++s+ y ++++l + ++++++ + e+ ++++++l    +e
  MMETSP1061-20121228|2223_1 655 SYQVGKIQSLSQDLIEEYKSNIATLAELDKQRVLLEEAKNKLESYFYYVKNKLLDDEENINKISTEEQREELRNLSMEAEE 735
                 5566677899*******************************************9999999887777777777776655443 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.7   1.7   3.3e-50   4.5e-47       2     566 ..      33     658 ..      32     685 .. 0.78
   2 ?   -0.5   0.6      0.05        68     483     557 ..     658     736 ..     654     772 .. 0.68

  Alignments for each domain:
  == domain 1    score: 158.7 bits;  conditional E-value: 3.3e-50
   TIGR01991   2 vGiDlGttnslvaavregka.evlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGrsledvk.keaeelpyele...dakgemvrlktaqg..evtPvevsaeiLkklkkraee......algkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk..aseglyavYDLGGGtFDvsiLklek...............GvFevlatgGdsaLGGDDfDralaklil........kkagleaels..keekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepl.tdldPdevvAlGAalqadlLaknkrkedllLlDviPLsLGl..........etmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedc.rsLarFeLrgippma.......AGaarirvtfqvDadGllsvsaqekltgveakievkpsygLsdee...iekmlkdslknaeeDmeaRalaekkveaerilealekalkadkdLlseeelkaikaaleklekaleeddaeai 566
                 +G+DlG  +  va v++g + e++++ + +     ++ + + g+  +G++a++  a++ ++t + +  ++Gr  ++   k  ++ ++ l+   +++++ ++l+   g    tP e++a +L+  ++ +++      ++ ++++ +v+tvP +  + +rqa  dAa+l g++vl L++e ta A+ +G+dk  ++ ++y+ Y+LG     vsi+k+++               G  evl+ g ds LGG  +D++l++++         +  g e+++   +  ++++  +a+++k+ L++++e+ +++    ++ +l++++sr ++eel e+l k++ +++ +al +a++++eei+ + + GG  rvp+v++ ++++ + + l ++++ de +AlGAa+    ++   r  ++ L+D+ P  +G+          e   G    i   n  i v+k+  Ft   D   +l   v  G  ++ e + + L r+++ g+   a        G  ++ ++f++   G+ s    e+  + + ++ev+  +  ++e     ++  ++s+++ ++D+ +   a kk e+e   +++++  +++k+   ++++k ++++++k++k+  + ++ ++
  MMETSP1061-20121228|2223_1  33 LGVDLGSVYMKVALVQRGAPlEIVTNMHSKRKTEQMILFDQ-GTRLYGSDANSLLARKATKTPVGMSVMLGRDEDHPAvKVLSDRHFPLTptyNETRKGLYLSIDGGkqVHTPEELTAMVLHYAEEFTHHygkekgHTYGDITDCVLTVPSFATQSERQALLDAAKLGGFKVLGLIDENTASALNFGMDKtfEEPKIYLFYNLGASALQVSIIKFHHyevpeskyskktkkvGSIEVLGKGWDSTLGGLAYDNRLVEYMAdsfnhkwrHARGHEKDIRdvPRAMTKIRLQANKVKHVLSANQEIPIHMDSlyDDISLSMHISRSQFEELCEDLSKRASDPIIDALTSANVTLEEIDAIEMLGGGMRVPKVQSSLTSVLGDKELgMHINSDESMALGAAFYGANISTAFRVRQVGLVDINPFPIGIslenlekddsEESWGKTATIFKANGKIGVKKTIAFTHEADVLCSLD-YVEPGPDQIPEGAkKELQRYKITGVGDFAkemeekgLGKPKVSLQFELSSSGITSLVKAEAAVEEKYTVEVEVEIDDDEESsppSDEKEEESTSKGKDDKGSD-DATKKGESESKNDTVSEESSKEKNDEAKKKTKMVEKEKKKVHKKSLQVESYQV 658
                 8**************88876367777777777888887765.599***************************987643144566777775111344456777777665478**********99887655411111156678*************************************************777779******************974444444444455556999***********************997777766522233333331134445555678999**********9999755799999************************************************************998888579**************999999999999********999985544444444445689999*********************999987.5788888887765268******9986433111122268999************99888887776666666665555444432223456678888888887665.45677788888888888888888888888888888888888776555444444 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.05
   TIGR01991 483 vkpsygLsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadkdLlse....eelkaikaalekleka 557
                 v     Ls++ ie+   +  + ae D+++ +l+e+k   e     +++ l +d++ +++    e+++++++   ++e+ 
  MMETSP1061-20121228|2223_1 658 VGKIQSLSQDLIEEYKSNIATLAELDKQRVLLEEAKNKLESYFYYVKNKLLDDEENINKisteEQREELRNLSMEAEEW 736
                 5566778899999999999999999***999****************99999988765411114445555544444443 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.6e-07   0.00076     101     169 ..     176     246 ..     152     254 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.6e-07
   TIGR00904 101 vlicvPsgiteverravkesaksaGarevylieeplaaai..GadlPveeptgsmvvdiGGGttevavisl 169
                  +++vPs +t+ er+a+ ++ak  G +   li+e  a+a+  G d   eep+  +  ++G  + +v++i +
  MMETSP1061-20121228|2223_1 176 CVLTVPSFATQSERQALLDAAKLGGFKVLGLIDENTASALnfGMDKTFEEPKIYLFYNLGASALQVSIIKF 246
                 6899*********************************997447788899******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       375  (0.0914188); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.13s 00:00:00.72 Elapsed: 00:00:01.28
# Mc/sec: 958.98
//
Query:       MMETSP1061-20121228|2224_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 914.15
//
Query:       MMETSP1061-20121228|2221_1  [L=947]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 3472.05
//
Query:       MMETSP1061-20121228|2227_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1206.76
//
Query:       MMETSP1061-20121228|2225_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.11s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 2184.21
//
Query:       MMETSP1061-20121228|2229_1  [L=838]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       474  (0.115553); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.17s 00:00:01.01 Elapsed: 00:00:01.22
# Mc/sec: 906.61
//
Query:       MMETSP1061-20121228|2228_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   15.2   0.1     0.0026   15.2   0.1    2.1  2  TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family
  ------ inclusion threshold ------
       0.62    8.6  11.0       0.23   10.0   0.6    2.5  2  TIGR00106 TIGR00106: uncharacterized protein, MTH1187 family


Domain annotation for each model (and alignments):
>> TIGR01411  tatAE: twin arginine-targeting protein translocase, TatA/E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   1.9         2     4e+03       9      16 ..      29      36 ..      25      37 .. 0.42
   2 !   15.2   0.1   1.2e-06    0.0026      10      45 ..     370     405 ..     365     407 .. 0.91

  Alignments for each domain:
  == domain 1    score: -4.6 bits;  conditional E-value: 2
   TIGR01411  9 iilvvilL 16
                ++l++ ++
  MMETSP1061-20121228|2228_1 29 LLLLILVV 36
                33333333 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.2e-06
   TIGR01411  10 ilvvilLlFGakKLpelgrdlGkaikeFKkalkeee 45 
                 ++ v++L FGa  L++   dlGk++  F +alk++ 
  MMETSP1061-20121228|2228_1 370 VVGVAILSFGATTLKDQENDLGKTVEDFVEALKDIR 405
                 67899****************************975 PP

>> TIGR00106  TIGR00106: uncharacterized protein, MTH1187 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   2.3      0.02        40      29      68 ..     116     155 ..     109     183 .. 0.70
   2 ?   10.0   0.6   0.00011      0.23      32      95 ..     382     445 ..     367     447 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.02
   TIGR00106  29 keeklkyelsamgTllEgdldellevik.aiheavfekgsd 68 
                  ee++k e+  m  ++E++ +e++ev++ +  e   e+ ++
  MMETSP1061-20121228|2228_1 116 DEEEMKEEVAEMVEVVEAEVEEIVEVVDgELAEEEVED-AV 155
                 6999**********************962444444444.33 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00011
   TIGR00106  32 klkyelsamgTllEgdldellevikaiheavfekgsdrvqsslkidtrtdkertledKvkavee 95 
                  lk + + +g ++E   + l ++ ++i   +  + s+r++   k d+ ++k + +e+Kv+av+ 
  MMETSP1061-20121228|2228_1 382 TLKDQENDLGKTVEDFVEALKDIREKIMALIVFAKSTRTKVETKADDARKKIEAIEAKVEAVKS 445
                 5666666666667666666666666666655556699*************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       560  (0.136519); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 1877.18
//
Query:       MMETSP1061-20121228|2230_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.16
# Mc/sec: 1130.16
//
Query:       MMETSP1061-20121228|2231_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 1194.19
//
Query:       MMETSP1061-20121228|2233_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 741.17
//
Query:       MMETSP1061-20121228|2232_1  [L=973]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.12s 00:00:00.58 Elapsed: 00:00:00.52
# Mc/sec: 2469.72
//
Query:       MMETSP1061-20121228|2234_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1708.53
//
Query:       MMETSP1061-20121228|2236_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1829.52
//
Query:       MMETSP1061-20121228|2235_1  [L=756]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 2078.83
//
Query:       MMETSP1061-20121228|2237_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0089   14.0   0.1      0.012   13.7   0.1    1.1  1  TIGR01068 thioredoxin: thioredoxin


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   2.8e-06     0.012       8      98 ..      17     107 ..      11     110 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.8e-06
   TIGR01068   8 etvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkelie 98 
                  +v+++d++v++ f  +    C +   +l  +a+++++ + ++ +++ e ++  + y++    t ++f   k++    G  ++++++ +++
  MMETSP1061-20121228|2237_1  17 AIVTAEDRVVVIRFGHDNDPTCMVQDEILMSIADKVKNFAVIYLVDITEVPDFNNMYELFDDCTTMFFYRNKHIMVDLGTGNNNKINWALA 107
                 45677788999999999889999999************************************************99999999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 749.70
//
Query:       MMETSP1061-20121228|2238_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1263.32
//
Query:       MMETSP1061-20121228|2240_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 2063.54
//
Query:       MMETSP1061-20121228|2246_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 315.63
//
Query:       MMETSP1061-20121228|2247_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 811.49
//
Query:       MMETSP1061-20121228|2244_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-25   85.2   0.8    1.4e-24   84.2   0.5    1.5  1  TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein
    6.6e-17   59.5   0.2      1e-16   58.9   0.1    1.3  1  TIGR01997 sufA_proteo: FeS assembly scaffold SufA
    1.6e-14   51.9   1.7    2.4e-14   51.3   1.2    1.3  1  TIGR02011 IscA: iron-sulfur cluster assembly protein IscA


Domain annotation for each model (and alignments):
>> TIGR00049  TIGR00049: iron-sulfur cluster assembly accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.5     1e-27   1.4e-24      17     106 .]       8     108 ..       3     108 .. 0.85

  Alignments for each domain:
  == domain 1    score: 84.2 bits;  conditional E-value: 1e-27
   TIGR00049  17 eekeenkglrvgvkegGCsGlkykleleeekee.dDevvekdgv.........kvvvdskslellegleidyveellgsgFkfs.NPnakssCgCgkSFsv 106
                 +++++  +lrv v++gGCsG++y++e++++ +e +D vv   ++         +vvvd++s+ +leg++idyv e+++s F+++ NP+++s CgCg+SF+v
  MMETSP1061-20121228|2244_1   8 NNNNDGYFLRVYVDAGGCSGFQYQFEVDNDLDEdEDVVVVMAKIdsdgglglpRVVVDETSMGFLEGSTIDYVIEMIKSAFVVAdNPQSESACGCGSSFAV 108
                 56677899********************99877478887776663333344456****************************988**************85 PP

>> TIGR01997  sufA_proteo: FeS assembly scaffold SufA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.1   7.4e-20     1e-16      19     107 .]       9     108 ..       5     108 .. 0.81

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 7.4e-20
   TIGR01997  19 kreeavgirlsvkktGcaGleyalelvsepkeddvl......lekdGa....kvfvapeallflkGtevdfvkktlrqglkf.nnPnatsacGcGesvel 107
                 ++++  ++r+ v  +Gc+G++y+ e+ ++ +ed+++      ++ dG     +v+v+  ++ fl+G ++d+v + +++ ++  +nP++ sacGcG s+ +
  MMETSP1061-20121228|2244_1   9 NNNDGYFLRVYVDAGGCSGFQYQFEVDNDLDEDEDVvvvmakIDSDGGlglpRVVVDETSMGFLEGSTIDYVIEMIKSAFVVaDNPQSESACGCGSSFAV 108
                 5678899*******************9999887654222222344553344589************************876538*************975 PP

>> TIGR02011  IscA: iron-sulfur cluster assembly protein IscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   1.2   1.8e-17   2.4e-14      17     105 .]       9     108 ..       3     108 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 1.8e-17
   TIGR02011  17 nrgkglglrlgvktsgcsgmayvlefvdeaddd.dlvf.....edkgv....kividakslvyldgiqldfvkeglnegfkf.enpnvkdecgcgesfhv 105
                 n   g  lr+ v + gcsg+ y +e  +++d+d d+v      +++g     ++v+d  s+ +l+g  +d+v e ++  f   +np+    cgcg sf v
  MMETSP1061-20121228|2244_1   9 NNNDGYFLRVYVDAGGCSGFQYQFEVDNDLDEDeDVVVvmakiDSDGGlglpRVVVDETSMGFLEGSTIDYVIEMIKSAFVVaDNPQSESACGCGSSFAV 108
                 6678999******************9877765515553333335666335559***************************8637**************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 677.16
//
Query:       MMETSP1061-20121228|2250_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.23
# Mc/sec: 361.54
//
Query:       MMETSP1061-20121228|2254_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1525.79
//
Query:       MMETSP1061-20121228|2249_1  [L=801]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 3203.74
//
Query:       MMETSP1061-20121228|2248_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 2272.35
//
Query:       MMETSP1061-20121228|2255_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1534.84
//
Query:       MMETSP1061-20121228|2251_1  [L=972]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-244  811.7   0.0   2.1e-244  811.4   0.0    1.1  1  TIGR00344 alaS: alanine--tRNA ligase
      1e-82  276.6   0.1    3.9e-42  142.3   0.0    4.6  4  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  811.4   0.0    1e-247  2.1e-244       1     844 [.      14     954 ..      14     957 .. 0.87

  Alignments for each domain:
  == domain 1    score: 811.4 bits;  conditional E-value: 1e-247
   TIGR00344   1 evrqefLdfFkek.gHevvksaslvprndptllltnagiaqfkdiftglvkpps.....krlvnaQkciRl....nDlenVGrtarHhTlFemlgnfsfgdYfkeeaiefawellteelgldkerlvvtvyeeDe......eayelWekegipaeriikldakdnfWelGd.GpcGPctEiyyDrvggkvgekelfedddryvEvwnlVFmqfnreadGnlkelpkkniDTGmGlERlvavlqdvptnydtdifkkliekieeitgv.kyasekagemdkkkveeqsalrviaDHvravaflladGvvpsnegrgYvlRrllRralrlak.klelkeeFlkklvetlievledlypelkekeelveeileeEeerfakTlerGlrllekllkkl.....ekkeldgedlfkLydtyGfPvelteelaeekglkvdiegfeklmaeqrerskeakkdls..........velqeeel...anvkkateflgYee.leveakvig.lf..edgk......lvdei.eagqeavviLdktvfYaesGGqegDkGylikddakvrvedvqkangvvvhvgeleegklkvgdkvkavidekrRleikknHsatHllhaalkkvl............gehvkQaGslveakklrlDfshkravtkeelkkvEdlvneqilenlqvkvelmdleeakkkgalal.fgekygekvRvvsvg.................dvsvelCgGtHvenTgeiglfkIvkeegiaaGvrRieavageeaie..............llkee.ekkLkeladkLkkeleel.akkve..klkeelkalrkeleslkkkiakqkaeelkeka....etieelkvlvekvdak.ekkelkeladelkek..eeavvvlasveeekvklvaavsedvlkkkikanelikqvakviggkgggredlaq 844
                 +vr +f+dfF++k gH++ ks++ vp++dptll+tnag++q+k++f+g+ +p        r+vn+QkciR+    nDl++VG++ +HhT+Femlgn+sfgdYfkeeai+ aw  l++e++ld +rl+ t++  De      ea+e+W k  +pa+r++++dakdnfWe+G  GpcGPctEi+yDr+gg+ ++k+++ d ++++E+wn VF+qfnreadG+l++lp++++DTGmG+ERl+++lq+v +nydtdif++l+e+i+ +tg+ + +  k+g  + +    + a+rviaDHvr++ f++adG+vpsnegrgYvlRr+lRra+r+++ +l++++ F++klv+ l+e++ed++pe++ek++++  i++ Eee+f++Tl++Gl+ +++l++++     +k+ ++g d+  Ly t GfPv+lte +aee g++vd+egfe++m+e++e+s++a+  +           v +q+++l    nv ++ +  +Y + + +e+ v++ lf  + g+      +vd++ ++  +++viLdkt fYae+GGq++D G++++ da+++v +vq ++ +v+h+ge+ eg+++vgd+v  ++d +rR+ i+ nH+ tH+l++al++vl            g +v+Q+Gslv++ k+r+Dfs + ++t ++l +vE++++e i ++++v   + +l++a+k+gal++ fgeky++ vRvv v                  ++sve+CgGtH +nT + + f +++eegia+G+rRi++v+ ++a +              ++k e   +L+ l ++L  e  +l ++ v+   ++     l k++ + kkk  +  ++e+k+ka    et e+ kv+  + d   ++k  k++a  + +k  ++a++++++ ++ +  lv+a++ + l+  i+ +++  +v++   gkggg++d aq
  MMETSP1061-20121228|2251_1  14 KVRSTFIDFFAKKhGHTFWKSSPCVPVDDPTLLFTNAGMNQYKPLFLGTCDPSLpmaklTRAVNSQKCIRAggkhNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEEAIAMAWSCLVDEFKLDTSRLYATYFAGDEstpadnEAREIWLKY-LPADRVLPFDAKDNFWEMGAtGPCGPCTEIHYDRIGGRDASKLVNADLPDVIEIWNNVFIQFNREADGSLRPLPAQHVDTGMGFERLTSILQGVDSNYDTDIFMPLFEEIRTLTGApRPYGGKVGAEEDEGFV-DMAYRVIADHVRTLSFAIADGAVPSNEGRGYVLRRVLRRAVRYGRqNLGAELGFFSKLVPKLVEIMEDTFPEIREKQDYIISIVKDEEESFSRTLDKGLQKFNDLAAAAkekdgDKAVFSGSDAHYLYTTMGFPVDLTELMAEELGMTVDMEGFEQKMKEEQEISQAAHLAKMaggsgkdmrmVAEQTSHLvntLNVPATDDSAKYATdAVLEGSVVKaLFigR-GEtedmigFVDSVtKESLTVGVILDKTSFYAEQGGQIYDIGEIKAGDATISVTNVQLYGSFVLHLGEVVEGTVSVGDSVSCSVDYARRRPIASNHTMTHVLNYALREVLvtrptaegkapsGVNVDQKGSLVDEFKSRFDFSWNSQLTPQQLADVESICRERIEKEVPVDAYVAPLADAEKIGALRAvFGEKYPDPVRVVAVTpspvpeilanpqdptwnQYSVEFCGGTHLQNTKDAEAFCLLNEEGIAKGIRRIVFVTCDDAKKaiaaadefeskldaASKLEgGIELEALVKSLTLECDSLvISAVKksAFRGTIAGLLKKVMTWKKKRMAGMTDEIKTKAieagETTEGNKVV-FRFDFGvDAKLGKNVATAFTKKikDKAIMIISADTDANRFLVMAMAPKGLD--IDCKAWCVAVTEGTNGKGGGKKDSAQ 954
                 69********76439************************************988888889***************************************************************************999999******998.******************************************************************************************************************9934556666665555555.59*****************************************97369********************************************************99887778878889***********************************************99876554223222223444444454777788899999999886667887765244421.11112223799996777899****************************************************************************************9777777766666678*************************************************************988***************999999999988777766***************************************9877666666666666555422222023445555555444433213333344677777788888888888888888888888772211344444555.555554499999999999999996677777777689999999999987765..99999*****************9887 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   9.4e-12   1.9e-08      58     177 ..      12     136 ..       2     143 .. 0.79
   2 !   14.2   0.0   9.6e-07     0.002     185     275 ..     177     280 ..     171     291 .. 0.70
   3 !   82.6   0.0   2.1e-27   4.4e-24     330     480 ..     302     460 ..     294     487 .. 0.87
   4 !  142.3   0.0   1.9e-45   3.9e-42     524     897 ..     540     970 ..     522     972 .] 0.75

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 9.4e-12
   TIGR03683  58 lkemrekflsFFe.kkgHtrieryPvvaRWRdDvyLtiAsiadFqPfvtsGlvkP..panPl...visqPsiRl....nDiDnvGrtGRHltsFemmaHhaFnsedkeiYWkdetvelckell.eelgide 177
                 ++++r +f++FF  k+gHt  + +P v+     ++ t+A + +++P    G+++P  p   l   v sq +iR     nD+D vG+   H t Fem++  +F       Y+k+e++ ++   l +e+++d+
  MMETSP1061-20121228|2251_1  12 MAKVRSTFIDFFAkKHGHTFWKSSPCVPVDDPTLLFTNAGMNQYKPLFL-GTCDPslPMAKLtraVNSQKCIRAggkhNDLDDVGKDVYHHTFFEMLGNWSFGD-----YFKEEAIAMAWSCLvDEFKLDT 136
                 6789********62688***********999999************865.888873333333333789****9655559********************99974.....7888888877776666666665 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 9.6e-07
   TIGR03683 185 spWeGG..GnaGpslEvlv...rGlElAtLvFmqlkkkke..geieik.....geryeeldlkivDtGYGlERlvWlsqgtPtvyda.vfgelvekllekagve 275
                 ++We G  G  Gp+ E+ +   +G +   Lv  +l    e  +++ i+     +++ ++l+ + vDtG G ERl+ + qg    yd+ +f  l e++++ +g++
  MMETSP1061-20121228|2251_1 177 NFWEMGatGPCGPCTEIHYdriGGRDASKLVNADLPDVIEiwNNVFIQfnreaDGSLRPLPAQHVDTGMGFERLTSILQGVDSNYDTdIFMPLFEEIRTLTGAP 280
                 55655434556666666532114666666666666554331223333333555999*****************************9769999999998887765 PP

  == domain 3    score: 82.6 bits;  conditional E-value: 2.1e-27
   TIGR03683 330 aivDHtrtlafmlgdgivPsnvkeGYLaRlvlRrtlrll.kelgleas.lselvemqleelkkeypelkenkdlildivelEeekyretlergkrivekll.......kekkeieldelvelYdshGippeivkeiakekgaevevPdnfyslvaerhek 480
                 +i+DH rtl+f ++dg vPsn + GY+ R vlRr++r+  ++lg+e   +s lv + +e +++++pe++e++d+i  iv+ Eee +++tl++g +  + l+         k+ ++ ++   lY ++G p+++ + +a+e g++v++ + f++++ e++e 
  MMETSP1061-20121228|2251_1 302 VIADHVRTLSFAIADGAVPSNEGRGYVLRRVLRRAVRYGrQNLGAELGfFSKLVPKLVEIMEDTFPEIREKQDYIISIVKDEEESFSRTLDKGLQKFNDLAaaakekdGDKAVFSGSDAHYLYTTMGFPVDLTELMAEELGMTVDM-EGFEQKMKEEQEI 460
                 589**********************************96268999998689********************************************99999877777654556678889999***********************98.5677776666554 PP

  == domain 4    score: 142.3 bits;  conditional E-value: 1.9e-45
   TIGR03683 524 nevvldktlfYpegGGqpaDtGvlkaedkkvevvdvqkvgdvilHkve..eeklkegeevkgeideerRlrlmrhHtatHvllaaarkvl............GeHvwqagaqkdtdkarlDitHykriseeeikeiErlaneivmenkpvkvkildrneAeekyGfklyqGGvppgkeiRvveied.................vdveaCgGtHlkntgeiglikilkteriqdgveRlefaage...aaieaiqeledllkesaeil.kvepeqlpe....tvkrffee.wkeq..rkeieklkeklaelkieel.......e....seaekvgdvkvvve.kvdadeeelkeiaekl....aekekvvvlvsekegkvkvvvssgekvkvkagelvkeiakllggkggGkeklaqgkvedkekvdealeki 897
                   v+ldkt fY+e GGq +D+G +ka d ++ v++vq +g  +lH  e  e +++ g+ v++ +d  rR  ++ +Ht tHvl+ a+r+vl            G  v q g+ +d+ k+r+D +   +++ +++ ++E+++ e + +++pv   + +  +Ae+   ++   G     + +Rvv +                   + ve CgGtHl+nt++  ++ +l+ e i  g+ R++f++ +   +ai+a+ e e++l  +++    +e e+l +    +++ ++ + +k++  r +i  l +k+++ k++++       +    +  e+ ++ kvv + ++ +d +  k++a+++    ++k  +++ + ++++++ v++++++  +++ +    ++++  +gkggGk++ aq +v+d + vd +++k+
  MMETSP1061-20121228|2251_1 540 VGVILDKTSFYAEQGGQIYDIGEIKAGDATISVTNVQLYGSFVLHLGEvvEGTVSVGDSVSCSVDYARRRPIASNHTMTHVLNYALREVLvtrptaegkapsGVNVDQKGSLVDEFKSRFDFSWNSQLTPQQLADVESICRERIEKEVPVDAYVAPLADAEKIGALRAVFGE-KYPDPVRVVAVTPspvpeilanpqdptwnqYSVEFCGGTHLQNTKDAEAFCLLNEEGIAKGIRRIVFVTCDdakKAIAAADEFESKLDAASKLEgGIELEALVKsltlECDSLVISaVKKSafRGTIAGLLKKVMTWKKKRMagmtdeiKtkaiEAGETTEGNKVVFRfDFGVDAKLGKNVATAFtkkiKDKAIMIISADTDANRFLVMAMAPKGLDIDCKAWCVAVTEGTNGKGGGKKDSAQFTVPDVSLVDSVMAKA 970
                 579******************************************65521555************************************9888888877777779*******************************************************987777766555.56678******999999**********98889************************************9751226788888999999988876312444444441111445544331332222334444444443333333300000002000144455556667555234566666666665543211333333444444444555566677777********************************99999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.12s 00:00:00.65 Elapsed: 00:00:00.61
# Mc/sec: 2103.17
//
Query:       MMETSP1061-20121228|2257_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       654  (0.159434); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        75  (0.0182838); expected 4.1 (0.001)
Passed Fwd filter:                        51  (0.012433); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 2.17u 0.20s 00:00:02.37 Elapsed: 00:00:01.61
# Mc/sec: 498.44
//
Query:       MMETSP1061-20121228|2259_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-20   70.6   0.1    1.3e-07   28.8   0.1    3.1  3  TIGR01969 minD_arch: cell division ATPase MinD
    1.1e-12   45.6   0.0    4.1e-08   30.7   0.1    3.2  3  TIGR01968 minD_bact: septum site-determining protein MinD
    1.3e-09   35.7   0.0    5.7e-05   20.6   0.0    2.2  2  TIGR01007 eps_fam: capsular exopolysaccharide family
    1.1e-06   26.2   0.3    8.4e-05   20.0   0.3    2.8  2  TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ
    1.3e-06   25.6   0.0    9.4e-05   19.5   0.1    2.6  3  TIGR03815 CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
    8.9e-05   19.6   0.1    0.00014   18.9   0.1    1.2  1  TIGR00750 lao: LAO/AO transport system ATPase
    9.3e-05   19.2   0.1    0.00083   16.1   0.0    1.9  2  TIGR03453 partition_RepA: plasmid partitioning protein RepA
    0.00011   19.5   0.1     0.0095   13.1   0.0    2.2  2  TIGR03018 pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase
    0.00012   19.6   0.2    0.00024   18.6   0.1    1.4  1  TIGR00455 apsK: adenylylsulfate kinase
    0.00013   19.2   0.0     0.0019   15.4   0.0    2.2  2  TIGR01287 nifH: nitrogenase iron protein
    0.00032   18.1   3.6    0.00044   17.7   0.3    2.4  3  TIGR00345 arsA: arsenite-activated ATPase ArsA
    0.00042   17.6   0.3    0.00087   16.6   0.1    1.5  2  TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
     0.0021   15.2   0.1     0.0031   14.6   0.0    1.2  1  TIGR02016 BchX: chlorophyllide reductase iron protein subunit X
     0.0037   15.2   0.0      0.045   11.7   0.0    2.2  2  TIGR00347 bioD: dethiobiotin synthase
      0.005   14.5   1.1       0.12   10.0   0.0    2.3  2  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.015   12.6   0.0      0.024   11.9   0.0    1.3  1  TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase
      0.018   10.8   0.0      0.025   10.3   0.0    1.1  1  TIGR01448 recD_rel: helicase, RecD/TraA family
       0.02   12.0   0.1      0.044   10.9   0.0    1.5  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY


Domain annotation for each model (and alignments):
>> TIGR01969  minD_arch: cell division ATPase MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.1   5.9e-10   1.3e-07       2      40 ..      82     120 ..      81     131 .. 0.93
   2 !   20.5   0.0     2e-07   4.6e-05     107     171 ..     200     270 ..     188     280 .. 0.82
   3 !   17.4   0.0   1.8e-06   0.00042     183     232 ..     333     382 ..     327     396 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 5.9e-10
   TIGR01969   2 vitiasGkGGtGkttvtanlgvaLaklGkkvlvlDaDia 40 
                 ++ + sGkGG+Gk tv+ +l+  La +G  v +lD D+ 
  MMETSP1061-20121228|2259_1  82 TVLVLSGKGGVGKSTVSCQLAHTLASMGYAVGLLDVDLC 120
                 57899*******************************985 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 2e-07
   TIGR01969 107 ddvdflliDaPaGlerdavtala......aadelllvvnPeissitDalkvkivaeklgtkilGvvlnrvt 171
                 d  d+l++D+P G   + ++ +       a + ++lv++Pe  +++D  k     +k  + ++Gvv n  +
  MMETSP1061-20121228|2259_1 200 DGLDYLIVDTPPGTSDEHISTVQylqkagAVSGAVLVTTPEEVCMADVRKELNFCQKTKVPVMGVVENMGE 270
                 678***********99998876522222234578*******************************988544 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 1.8e-06
   TIGR01969 183 eailevpvlavvPeDpevrraaakgepvvvkkpespaakalvelaaelag 232
                  +  +vp  + +P Dp++ +a+ +g++ v+++p+s aakal e+  +++ 
  MMETSP1061-20121228|2259_1 333 ADRYNVPYWGLLPMDPDLLQACEHGKAFVEERPDSLAAKALEEFCRKIIA 382
                 5556889999***********************************99986 PP

>> TIGR01968  minD_bact: septum site-determining protein MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.1   1.8e-10   4.1e-08       3      40 ..      82     119 ..      80     130 .. 0.91
   2 !    6.1   0.0    0.0057       1.3     111     150 ..     201     246 ..     181     265 .. 0.77
   3 ?    4.9   0.0     0.013         3     188     239 ..     331     383 ..     328     396 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1.8e-10
   TIGR01968   3 vivvtsGkGGvGkttttanlgtalaklgkkvvlvdadi 40 
                  + v sGkGGvGk+t++ +l+ +la++g+ v l+d+d+
  MMETSP1061-20121228|2259_1  82 TVLVLSGKGGVGKSTVSCQLAHTLASMGYAVGLLDVDL 119
                 57899*******************************97 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0057
   TIGR01968 111 efdyvlidsPaGiekGfknavasade......aivvttPevsavrd 150
                   dy+++d+P G    +  +v+  ++      a++vttPe  ++ d
  MMETSP1061-20121228|2259_1 201 GLDYLIVDTPPGTSDEHISTVQYLQKagavsgAVLVTTPEEVCMAD 246
                 48**********99988888776554222222799****9777766 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.013
   TIGR01968 188 dvkeilsikligvipedeevivatnkGePvvlekk.seagkafeniarrllGe 239
                 ++ +   ++  g++p d ++++a  +G+  v e+  s a+ka e+ +r++  +
  MMETSP1061-20121228|2259_1 331 EMADRYNVPYWGLLPMDPDLLQACEHGKAFVEERPdSLAAKALEEFCRKIIAK 383
                 678889999********************99998669*********9999764 PP

>> TIGR01007  eps_fam: capsular exopolysaccharide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   2.5e-07   5.7e-05       9      58 ..      71     121 ..      66     136 .. 0.86
   2 !   13.0   0.0   5.4e-05     0.012     127     188 ..     201     267 ..     186     276 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.5e-07
   TIGR01007   9 niqfsgae.lkvllitsvkageGkstvsaniavafaqaGyktLliDgDlrk 58 
                 +++ s ++   ++l+ s k g Gkstvs ++a ++a+ Gy + l+D Dl  
  MMETSP1061-20121228|2259_1  71 KLKTSLENvSHTVLVLSGKGGVGKSTVSCQLAHTLASMGYAVGLLDVDLCG 121
                 566666664568899*********************************865 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 5.4e-05
   TIGR01007 127 yfDyiiiDtpP......igvviDaaii..aravdasiLvveaekikkrevkkakeqleqagskiLGvvln 188
                   Dy+i+DtpP      i      + +  a av +++Lv++ e++   +v+k  +  +++   ++Gvv n
  MMETSP1061-20121228|2259_1 201 GLDYLIVDTPPgtsdehI---STVQYLqkAGAVSGAVLVTTPEEVCMADVRKELNFCQKTKVPVMGVVEN 267
                 57*********4332222...333433114578999*******************************977 PP

>> TIGR03371  cellulose_yhjQ: cellulose synthase operon protein YhjQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.3   3.7e-07   8.4e-05       2      39 ..      81     118 ..      80     263 .. 0.78
   2 ?    2.8   0.0     0.065        15     208     243 ..     347     382 ..     342     385 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 3.7e-07
   TIGR03371   2 kviaivsvkGGvGkTtltAnLasalklsgeevlaidld 39 
                 +++ + s kGGvGk+t++ +La+ l++ g +v ++d+d
  MMETSP1061-20121228|2259_1  81 HTVLVLSGKGGVGKSTVSCQLAHTLASMGYAVGLLDVD 118
                 68999*************************99887765 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.065
   TIGR03371 208 DeavaealaagepvleyaphSqaaedlrtlagWlls 243
                 D  +  a+ +g+ ++e +p+S aa+ l+++   +++
  MMETSP1061-20121228|2259_1 347 DPDLLQACEHGKAFVEERPDSLAAKALEEFCRKIIA 382
                 6778899*******************9998766655 PP

>> TIGR03815  CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   4.1e-07   9.4e-05     103     152 ..      72     121 ..      59     125 .. 0.86
   2 ?   -2.2   0.0       1.7   3.9e+02     269     290 ..     166     187 ..     161     193 .. 0.82
   3 ?    2.9   0.0     0.047        11     266     337 ..     305     381 ..     299     384 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.1e-07
   TIGR03815 103 ldesdeargvvvaVvggrGGaGAStlAaalAlaaarsglrtlLvDadPlg 152
                 l+ s e+ +++v V++g+GG G St+++ lA + a+ g  + L+D d  g
  MMETSP1061-20121228|2259_1  72 LKTSLENVSHTVLVLSGKGGVGKSTVSCQLAHTLASMGYAVGLLDVDLCG 121
                 4456677899***********************************99655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.7
   TIGR03815 269 lgrrnpdlrlVvRgpapggLda 290
                 l++ n d+++V Rgp ++gL +
  MMETSP1061-20121228|2259_1 166 LPDENRDQAVVWRGPRKNGLIQ 187
                 6678889*********999965 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.047
   TIGR03815 266 laalgrrnpdlrlVvRgpapggLdaeevaevlgvpllgevrdqrrlaealerGgl.....prasrrrplaraaeevL 337
                 +++l ++ ++l++     +++g  ++e a+  +vp  g ++ +++l +a e+G++     p+  + ++l++++++++
  MMETSP1061-20121228|2259_1 305 CPELFDNGANLSVSSTLYPASGGGPKEMADRYNVPYWGLLPMDPDLLQACEHGKAfveerPDSLAAKALEEFCRKII 381
                 5555555555555555555556678999**************************95444444444555566666655 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   6.1e-07   0.00014      35      86 ..      82     133 ..      61     147 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 6.1e-07
   TIGR00750  35 hvvGltGvPGaGkstlveklieelrrrGlkvaviavDPsspftGGsllGDrl 86 
                  v+ l G  G+Gkst+  +l+++l   G+ v+++ vD   p +   +lGD  
  MMETSP1061-20121228|2259_1  82 TVLVLSGKGGVGKSTVSCQLAHTLASMGYAVGLLDVDLCGPSAPRMILGDAH 133
                 466789*******************************************965 PP

>> TIGR03453  partition_RepA: plasmid partitioning protein RepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.6e-06   0.00083     105     142 ..      81     118 ..      60     126 .. 0.78
   2 ?    0.8   0.0      0.16        37     234     308 ..     201     286 ..     182     304 .. 0.65

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.6e-06
   TIGR03453 105 qviavvnfkGGsgktttaahLaqylalrGyrvLavDlD 142
                   + v+  kGG gk t +  La++la  Gy v  +D+D
  MMETSP1061-20121228|2259_1  81 HTVLVLSGKGGVGKSTVSCQLAHTLASMGYAVGLLDVD 118
                 46778999***********************9777776 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.16
   TIGR03453 234 dyDvvviDcpPqlg...fltlsal....laatavlitvhpq..mlDvasmsqfLemtg.dllkvveeagg.elkydflrylvtrye 308
                   D +++D+pP  +     t+  l    + + avl+t   +  m Dv    +f + t   ++ vve+ g  ++++d l +  t  e
  MMETSP1061-20121228|2259_1 201 GLDYLIVDTPPGTSdehISTVQYLqkagAVSGAVLVTTPEEvcMADVRKELNFCQKTKvPVMGVVENMGEyTTTLDRLTFATTASE 286
                 56888999999654111223333311113356788887654449999999999887652789999999862455677777666655 PP

>> TIGR03018  pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   4.2e-05    0.0095      29      83 ..      74     127 ..      62     135 .. 0.86
   2 ?    4.3   0.0     0.021       4.8     151     205 ..     204     265 ..     199     267 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.2e-05
   TIGR03018  29 akskknknlimvtsalsgeGksftaiNLAislaleldktvLliDadlrrPslsel 83 
                 ++ ++ + +++v s   g Gks ++  LA +la  +   v l+D dl  Ps+ ++
  MMETSP1061-20121228|2259_1  74 TSLENVSHTVLVLSGKGGVGKSTVSCQLAHTLAS-MGYAVGLLDVDLCGPSAPRM 127
                 455677899***********************96.899999**********9886 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.021
   TIGR03018 151 iiiiDtppllv...tsearvl..aelvdqivlVveeertteeavkealsaleskkv..lglv 205
                 ++i+Dtpp  +   +s ++ l  a  v + vlV   e++ +++v++ l+  +++kv  +g+v
  MMETSP1061-20121228|2259_1 204 YLIVDTPPGTSdehISTVQYLqkAGAVSGAVLVTTPEEVCMADVRKELNFCQKTKVpvMGVV 265
                 78999999764111344444411457999********************9998775225555 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.1   1.1e-06   0.00024      11      55 ..      74     118 ..      63     121 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.1e-06
   TIGR00455  11 kakkkqksvvlWltGlsgsGkstianalekkLeekglrvevLDGD 55 
                  ++++ + +vl l G  g Gkst+++ l++ L ++g+ v +LD D
  MMETSP1061-20121228|2259_1  74 TSLENVSHTVLVLSGKGGVGKSTVSCQLAHTLASMGYAVGLLDVD 118
                 455666778999*******************************88 PP

>> TIGR01287  nifH: nitrogenase iron protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.2e-06    0.0019       4      38 ..      85     119 ..      82     143 .. 0.78
   2 ?    1.1   0.0      0.19        43     195     246 ..     331     382 ..     329     388 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 8.2e-06
   TIGR01287   4 aiyGkGGiGksttvqniaaalaeagkkvlvvGcdP 38 
                  + GkGG+Gkst+++ +a +la++g+ v ++  d 
  MMETSP1061-20121228|2259_1  85 VLSGKGGVGKSTVSCQLAHTLASMGYAVGLLDVDL 119
                 567**********************9987666554 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.19
   TIGR01287 195 efakklgtqliekvPrsnivqkaelekktvieydpeseqakeyrelakkive 246
                 e+a++ +    + +P++  + +a  ++k+ +e  p+s  ak  +e+ +ki+ 
  MMETSP1061-20121228|2259_1 331 EMADRYNVPYWGLLPMDPDLLQACEHGKAFVEERPDSLAAKALEEFCRKIIA 382
                 6777778888889999998888888999999*****************9986 PP

>> TIGR00345  arsA: arsenite-activated ATPase ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   1.9e-06   0.00044       2      31 ..      86     115 ..      85     120 .. 0.87
   2 ?    0.1   0.1      0.43        99     126     136 ..     202     212 ..     185     276 .. 0.57
   3 ?   -0.8   0.0      0.85   1.9e+02     205     239 ..     233     267 ..     213     296 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.9e-06
   TIGR00345   2 fgGKGGVGKTtisaatairlaesgkkvllv 31 
                 ++GKGGVGK t+s+ +a  la  g  v l+
  MMETSP1061-20121228|2259_1  86 LSGKGGVGKSTVSCQLAHTLASMGYAVGLL 115
                 68*******************999887666 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.43
   TIGR00345 126 fDvvifDtAPT 136
                  D++i+Dt P 
  MMETSP1061-20121228|2259_1 202 LDYLIVDTPPG 212
                 56666666552 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.85
   TIGR00345 205 fvlVvipeklslkEseRavkeLkkygikvdavivN 239
                  vlV++pe++ + ++++ ++  +k ++ v  v+ N
  MMETSP1061-20121228|2259_1 233 AVLVTTPEEVCMADVRKELNFCQKTKVPVMGVVEN 267
                 5899999*999999999999999999999998877 PP

>> TIGR01281  DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   3.8e-06   0.00087       2      31 ..      83     112 ..      82     124 .. 0.86
   2 ?   -3.6   0.0       5.5   1.2e+03     168     191 ..     255     278 ..     244     287 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.8e-06
   TIGR01281   2 ilavyGkGGiGksttssnlsvalakkGkkv 31 
                 +l + GkGG+Gkst s+ l+ +la  G  v
  MMETSP1061-20121228|2259_1  83 VLVLSGKGGVGKSTVSCQLAHTLASMGYAV 112
                 67789*******************999876 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 5.5
   TIGR01281 168 ksydvklaGiianrvdkedllekf 191
                 ++ +v + G++ n  +++  l++ 
  MMETSP1061-20121228|2259_1 255 QKTKVPVMGVVENMGEYTTTLDRL 278
                 445666777777777777777765 PP

>> TIGR02016  BchX: chlorophyllide reductase iron protein subunit X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.4e-05    0.0031       3      37 ..      84     118 ..      82     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.4e-05
   TIGR02016   3 iaiyGkGGiGksftttnlsaklallgkrvlqlGcd 37 
                 + + GkGG+Gks + + l+++la +g  v +l  d
  MMETSP1061-20121228|2259_1  84 LVLSGKGGVGKSTVSCQLAHTLASMGYAVGLLDVD 118
                 6788**********************999888776 PP

>> TIGR00347  bioD: dethiobiotin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0    0.0002     0.045       8      40 ..      91     123 ..      85     151 .. 0.77
   2 ?    0.9   0.0      0.42        96     132     166 .]     233     267 ..     199     267 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.0002
   TIGR00347   8 evGKtvvssalakklkkagysvallKpvqtgie 40 
                 +vGK+ vs+ la++l ++gy v+ll +   g +
  MMETSP1061-20121228|2259_1  91 GVGKSTVSCQLAHTLASMGYAVGLLDVDLCGPS 123
                 8**********************9876655554 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.42
   TIGR00347 132 vilVarvkLGtinhtlltvealrqkglklagviln 166
                 ++lV+ ++  ++      ++ ++++++ ++gv+ n
  MMETSP1061-20121228|2259_1 233 AVLVTTPEEVCMADVRKELNFCQKTKVPVMGVVEN 267
                 67888888888888888999999999999999876 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.1     0.082        19       5      24 ..      83     102 ..      80     110 .. 0.81
   2 !   10.0   0.0   0.00053      0.12      35     124 ..     188     270 ..     181     305 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.082
   TIGR00231   5 kivivGhvdvGKstLlnsll 24 
                  +v+ G+++vGKst   +l+
  MMETSP1061-20121228|2259_1  83 VLVLSGKGGVGKSTVSCQLA 102
                 57889*********876665 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00053
   TIGR00231  35 pgvtrdyvteqieedGktykvnllDTa.GqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDl 124
                 ++ t+ ++t   e dG      ++DT+ G+ d      +++ +  + +  v++++lv + ee+ +++ ++  + ++k +vp++ vv  +  
  MMETSP1061-20121228|2259_1 188 QFLTQVDWTG--ETDG--LDYLIVDTPpGTSDE----HISTVQYLQKAGAVSGAVLVTTPEEVCMADVRKELNFCQKTKVPVMGVVENMGE 270
                 5667777776..8888..77999***6377777....8899999**************************************988876655 PP

>> TIGR03574  selen_PSTK: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00011     0.024       2      38 ..      84     120 ..      83     127 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
   TIGR03574   2 iiltGlPgvGkstfskelakklseknidviilgtdll 38 
                 ++l G  gvGkst s +la+ l+  ++ v +l+ dl 
  MMETSP1061-20121228|2259_1  84 LVLSGKGGVGKSTVSCQLAHTLASMGYAVGLLDVDLC 120
                 89******************************99986 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00011     0.025     335     377 ..      78     123 ..      56     127 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00011
   TIGR01448 335 aiqdkvviltGGPGtGKtTvtkaiielaeele...gllevvLaAPT 377
                  +++ v++l+G  G+GK+Tv   +++  +++    gll+v L+ P 
  MMETSP1061-20121228|2259_1  78 NVSHTVLVLSGKGGVGKSTVSCQLAHTLASMGyavGLLDVDLCGPS 123
                 45789****************9999999988733356999999985 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00019     0.044      63     110 ..      65     112 ..      54     119 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00019
   TIGR00064  63 eketklelkelkeekkpnvillvGvNGvGKTttiaKlakllkkegkkv 110
                  +e++++lk+  e+ + +v++l G  GvGK t    la++l++ g+ v
  MMETSP1061-20121228|2259_1  65 AQEETTKLKTSLENVSHTVLVLSGKGGVGKSTVSCQLAHTLASMGYAV 112
                 33444556778899999*************************999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      229  (0.0558264); expected 82.0 (0.02)
Passed Vit filter:                        69  (0.0168211); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1591.87
//
Query:       MMETSP1061-20121228|2260_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 574.15
//
Query:       MMETSP1061-20121228|2261_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 1389.36
//
Query:       MMETSP1061-20121228|2271_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 973.99
//
Query:       MMETSP1061-20121228|2274_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1701.96
//
Query:       MMETSP1061-20121228|2266_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1701.51
//
Query:       MMETSP1061-20121228|2277_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.10s 00:00:00.18 Elapsed: 00:00:00.18
# Mc/sec: 403.30
//
Query:       MMETSP1061-20121228|2281_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 409.86
//
Query:       MMETSP1061-20121228|2283_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.8   3.2        1.7    6.6   0.4    3.2  3  TIGR03687 pupylate_cterm: ubiquitin-like protein Pup


Domain annotation for each model (and alignments):
>> TIGR03687  pupylate_cterm: ubiquitin-like protein Pup
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.4   0.00041       1.7       3      23 ..       9      34 ..       7      35 .. 0.88
   2 ?    0.2   0.0     0.042   1.7e+02       3      10 ..      54      61 ..      52      63 .. 0.65
   3 ?    3.3   0.0    0.0044        18       3      12 ..      98     107 ..      96     109 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00041
   TIGR03687  3 egvDdlLDeI.....DdvLEsNAeeF 23
                 +vDd+L  I     Ddv  ++A+eF
  MMETSP1061-20121228|2283_1  9 KDVDDILNWIrsgkpDDVYGVDADEF 34
                59*****9998888899999999998 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.042
   TIGR03687  3 egvDdlLD 10
                 ++ ++LD
  MMETSP1061-20121228|2283_1 54 RDIESVLD 61
                56666666 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.0044
   TIGR03687   3 egvDdlLDeI 12 
                  +vDd+L  I
  MMETSP1061-20121228|2283_1  98 KDVDDILNWI 107
                 59****9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 725.94
//
Query:       MMETSP1061-20121228|2276_1  [L=885]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (885 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 2995.14
//
Query:       MMETSP1061-20121228|2273_1  [L=761]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.8e-298  988.0   0.5   7.3e-298  987.7   0.3    1.0  1  TIGR00603 rad25: DNA repair helicase rad25
    1.5e-10   38.5   0.7    2.5e-06   24.6   0.0    2.7  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR00603  rad25: DNA repair helicase rad25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  987.7   0.3  3.5e-301  7.3e-298      11     720 ..       2     713 ..       1     721 [. 0.89

  Alignments for each domain:
  == domain 1    score: 987.7 bits;  conditional E-value: 3.5e-301
   TIGR00603  11 dhasrplwvapdGriflesfsplykqakdflvaiaepvcrpesiheykltayslyaavsvGletediievldrlsktsipeeiiefiractvsyGkvklvlkknkyfvesskaevlkkllkdsviaklrlksseeedaelveetltskedllkdkeevtaaksageveaaqseeavskdiadfaekeeeeeeeeeetkvvsfeidqekveevkkrcieleyplleeydfrndtvnpdldi.dlkptavlrpyqekslrkmfGnGrarsGiivlpcGaGkslvGvtaactvkksvlvlctsavsveqwkqqfklwstiedeqiarftsdakeklkgeagvvvstysmvaftkkrsaesekvmeflkerewGlllldevhvvpakmfrrvltvvkahcklGltatlvreddkiadlnfliGpklyeanwlelqkkGfiakvqcaevwcpmtaefykeylkeksr.kklllyvmnpnkfracqflikfherrgdkiivfsdnvfalkeyaiklgkpfiyGptsqqerlkilenfkynekvntiflskvgdtsidlpeanvliqisshaGsrrqeaqrlGrilrakkksee.....eeynaffyslvskdtqemyystkrqrflvdqGysfkvitel..kgideesel.......ayaskeeqlellqkvlaasdedaeeekleeetdsvakgakksksslsakavrkagslsslsgaddaayleykksk 720
                 dh +rp w +pdG+i+le+f  ly qa+dflvaiaep++rpe++h+yklt+yslyaav+  +ete ii+vl+rlsk ++p+e+ +f+r+ct  yGk klvlk+nk++ves ++ vl++ll+d+ ia++r++ ++ +   + e  +t     +++k+e  +++ +   e  +++++   d+ d +  +++     + t vvsf++d +kve+vk++ iel+ypl+eeydfrndt+np++ + dlkp + +r yqe+sl kmfGnGrarsGiivlpcGaGk+l+Gvtaa t+kks+++l+t+avsv qwk+qf+ w++i d++i++ftsd+k+ l+  a v+v+ty+m++++ krs++s+kvm+ +++rewG ll+devhvvpakmfrrv+  vkah++lGltatlvredd i+dlnfliGpklyeanw++l+ +G++a+vqc evwcpmt  f keyl+ ++   k+llyvmnp+k+ra +fl++fhe+rgdkiivfsd v++lk ya  l+kp+iyG t+++er  il  f+  + ++ti +skvgdtsidlpeanv++q+ssh GsrrqeaqrlGrilr+k  ++        +naffy+lvs dtqem ys+krq++l+dqGy+fk++t+l  k+ +e ++l       ay++ e+ +++l+ vl+ s+ d+++e+ +e++  ++++   ++ + +++ +  ++++s++sg+  + y e  ++k
  MMETSP1061-20121228|2273_1   2 DHVQRPCWTCPDGNIYLEAFHDLYVQAYDFLVAIAEPIARPEFVHQYKLTPYSLYAAVATNIETESIINVLERLSKNALPKEVKKFVRECTSKYGKAKLVLKHNKFYVESEFPMVLRELLRDPKIAQARIHDQQAD---VDEFGFT-----IHTKAEEMKENLEMLREPGDGDSDDDDDDIDPMSSKQK-----KPTVVVSFQVDGKKVEDVKRQAIELDYPLMEEYDFRNDTMNPNVPLfDLKPITRIRRYQERSLAKMFGNGRARSGIIVLPCGAGKTLTGVTAAQTIKKSCVCLATNAVSVLQWKYQFQKWTNIPDDRISVFTSDQKDDLHPGACVLVTTYTMISYSGKRSEQSQKVMDQITGREWGCLLMDEVHVVPAKMFRRVIGSVKAHTRLGLTATLVREDDLISDLNFLIGPKLYEANWMDLTAQGYLANVQCVEVWCPMTGPFMKEYLSASNArLKQLLYVMNPSKLRAVEFLVRFHEQRGDKIIVFSDLVYSLKLYAEMLKKPLIYGETPERERQAILGTFRATDALRTICISKVGDTSIDLPEANVIVQVSSHFGSRRQEAQRLGRILRPKSYTQTdgsnkSTFNAFFYTLVSSDTQEMFYSAKRQQYLIDQGYTFKIVTNLceKAAEEAKKLsgtdngyAYSTAEDDRKILRTVLT-SETDVDKEQRAEDAAIRKSNPDGAQMADASTKRMAGMTMSQVSGGSGMRYKEMISTK 713
                 9*********************************************************************************************************************************954444...2333333.....22222222333333333344442222233333222222.....23789***************************************966************************************************************************************************************************************************************************************************************************9765538**********************************************************************************************************************876654555589**************************************94444565555533333337**************97.67888999998887777555444444444444556789999*********9987665 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   1.2e-09   2.5e-06       8     226 ..     236     448 ..     230     500 .. 0.71
   2 !   11.4   0.1   1.2e-05     0.025     322     384 ..     506     570 ..     491     598 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.2e-09
   TIGR04095   8 elrdyqkeaikaWfknn..grGilkmatGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaekFglepilayesvsrWqkelsekleelsskakkllliit..tnatlkeekFqsqlrllkkkllliaDeahnlGakrlkealpd.siklRLgLsatPeRyfDeeGtealleYfGkvvleftLkeaikkgaLvkYlYyPilveltedetdeYvelt 226
                 ++r yq++++ + f n+    Gi+ +  G+Gktlt +++++ ++++      v ++     v qW  + +k+   p    + +s +++  ++ l+  +    ++ ++i+   +++ +++k ++q+   +    l+ De+h + ak ++  + + +++ RLgL+at  R  D    ++l    G  ++e +  +  ++g+L + +   +   +t    +eY   +
  MMETSP1061-20121228|2273_1 236 RIRRYQERSLAKMFGNGraRSGIIVLPCGAGKTLTGVTAAQTIKKS-----CVCLATNAVSVLQWKYQFQKWTNIP---DDRISVFTSDQKDDLHPGACVLVTTYTMISysGKRSEQSQKVMDQITGREW-GCLLMDEVHVVPAKMFRRVIGSvKAHTRLGLTATLVREDD--LISDLNFLIGPKLYEANWMDLTAQGYLANVQCVEVWCPMTGPFMKEYLSAS 448
                 68***********99852246******************9988776.....344445556688****999987655...566666777666666665555555555554114455556666666655444.56789************9997537999*******999654..456666677777777777777777777777766666666666666666554 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 1.2e-05
   TIGR04095 322 eeskeeReellkqfes.gelqalvairCLDeGvDvPairtayiLass.snPrqFiqRRGRvLRks 384
                 e++++eR+ +l +f + ++l ++   +  D  +D+P+++  + ++s     rq  qR GR+LR++
  MMETSP1061-20121228|2273_1 506 ETPERERQAILGTFRAtDALRTICISKVGDTSIDLPEANVIVQVSSHfGSRRQEAQRLGRILRPK 570
                 78999*********762678999888999*********9999888872467899*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.56
# Mc/sec: 1762.17
//
Query:       MMETSP1061-20121228|2284_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-38  130.0   0.0    2.4e-38  129.6   0.0    1.0  1  TIGR00041 DTMP_kinase: thymidylate kinase
  ------ inclusion threshold ------
      0.041   10.9   0.5        1.4    5.9   0.0    2.4  2  TIGR03709 PPK2_rel_1: polyphosphate:nucleotide phosphotransferase, PPK2 family


Domain annotation for each model (and alignments):
>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   0.0   1.2e-41   2.4e-38       3     196 .]      10     203 ..       9     203 .. 0.91

  Alignments for each domain:
  == domain 1    score: 129.6 bits;  conditional E-value: 1.2e-41
   TIGR00041   3 kgkfiviEGidGaGKTtqlellkkllkeeglkvlltr.EPggtklgekirelllteneepleekaealLFaadRaehveekikpalaegklvisDRylfSslAYqglarkididlvlelnekalqlkPdlvilLdidpevalerlskrgeldreelekldflekvrekyleladk.e....kkivvvdaenkveeveeki 196
                 +g fiv+EG+d+ GKTtq+ ll+k+l   gl++++ r + + t +g +i+++   + +++l+++a +lLF+a+R e +  + k  l e ++v++DRy  S++A+++++  ++ dl ++   ++    Pd vi+Ld+ +e+a +r +  ge    ++ek++++++vr+++ el+   e       ++v+a + +eev+++i
  MMETSP1061-20121228|2284_1  10 RGAFIVLEGVDRCGKTTQASLLVKHLIGLGLATVAMRfPDRTTMVGDLINQY--LQSKSELDDRAVHLLFSANRWEAAPALTKTLLDECTNVVCDRYAHSGVAFSSAKPSLENDLDWCRGCDVGLPAPDAVIFLDLSQEEAEQRGGYGGE----RYEKKEMQQRVRQRFSELQGMdEadgqIPWYIVNAAQTIEEVQQEI 203
                 689*************************88887776615577889*******..778889999***********9999999*****************************************99999******************99999....9*****************7543333324569*************98 PP

>> TIGR03709  PPK2_rel_1: polyphosphate:nucleotide phosphotransferase, PPK2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0   0.00068       1.4      51      99 ..       6      54 ..       3      67 .. 0.87
   2 ?    2.8   0.2    0.0059        12     219     250 ..     183     215 ..     139     221 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00068
   TIGR03709 51 aedkrslLvvlqamDaaGKdgtirhvlsgvnpqgvkvasFkaPsaeela 99
                a +kr  ++vl ++D +GK +    +++++   g+ +++ + P ++ + 
  MMETSP1061-20121228|2284_1  6 AAKKRGAFIVLEGVDRCGKTTQASLLVKHLIGLGLATVAMRFPDRTTMV 54
                7789999***************999999999999999999999887665 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0059
   TIGR03709 219 kaaPWyvvPadkkw.farlvvaeillealeeld 250
                  + PWy+v a +     +  +++i+ +++ee++
  MMETSP1061-20121228|2284_1 183 GQIPWYIVNAAQTIeEVQQEINAIVESTVEEVN 215
                 467999999876541446667777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1248.40
//
Query:       MMETSP1061-20121228|2285_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.95    5.6  19.7      0.063    9.5   2.6    2.2  2  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.6   1.5e-05     0.063      56      89 ..      79     112 ..      69     167 .. 0.78
   2 ?    2.1   5.6    0.0028        12      92     147 ..     279     334 ..     245     339 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 1.5e-05
   TIGR03490  56 keksensnnksnseekdeeepkskkpekkpdpsk 89 
                 + +++n+nn++n++++++++  +++p+  p ps 
  MMETSP1061-20121228|2285_1  79 HYHNNNNNNNNNNNNNNNDDDRNNEPSTTPTPSA 112
                 2344444455577777777777788888888875 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.0028
   TIGR03490  92 eeiekpkkepkkpdkkpqadepnndhadqknnnkvdfsdldklkkelsfenftlYs 147
                 +++++ +++++  d+ ++ d++++d+ d+++++   + d++k ++ ++  + t+Y+
  MMETSP1061-20121228|2285_1 279 DSEDNYNDNDNDSDNDSDDDDDDDDDDDNDDDDYLADEDMEKTSGFVQGMTLTMYT 334
                 44555666666677666666665555555566666788999999999999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.09s 00:00:00.30 Elapsed: 00:00:00.39
# Mc/sec: 1160.83
//
Query:       MMETSP1061-20121228|2275_1  [L=816]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-44  148.7   0.0    2.1e-24   84.2   0.1    2.9  3  TIGR02152 D_ribokin_bact: ribokinase
    1.5e-19   68.1   0.0    2.7e-19   67.3   0.0    1.3  1  TIGR02631 xylA_Arthro: xylose isomerase
    9.8e-19   65.2   0.5    3.9e-17   59.9   0.3    2.2  2  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
    1.4e-17   61.5   0.3    3.4e-16   57.0   0.2    2.2  2  TIGR03828 pfkB: 1-phosphofructokinase
    4.8e-16   56.5   0.0    6.8e-16   56.0   0.0    1.1  1  TIGR02635 RhaI_grampos: L-rhamnose isomerase
    2.4e-15   54.3   0.1    1.2e-12   45.4   0.1    2.3  2  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I
    6.3e-08   29.7   0.0    9.6e-08   29.1   0.0    1.1  1  TIGR02629 L_rham_iso_rhiz: L-rhamnose catabolism isomerase
    9.6e-07   25.8   0.0    1.5e-06   25.2   0.0    1.2  1  TIGR02630 xylose_isom_A: xylose isomerase
    0.00011   19.5   0.0    0.00029   18.1   0.0    1.7  2  TIGR03234 OH-pyruv-isom: hydroxypyruvate isomerase
    0.00091   16.4   0.1      0.002   15.3   0.0    1.5  1  TIGR00097 HMP-P_kinase: phosphomethylpyrimidine kinase
     0.0013   16.0   0.0     0.0022   15.2   0.0    1.3  1  TIGR00687 pyridox_kin: pyridoxal kinase


Domain annotation for each model (and alignments):
>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   7.8e-20   2.9e-17       1     114 [.      31     153 ..      31     168 .. 0.83
   2 ?   -0.9   0.0      0.48   1.8e+02     127     154 ..     197     224 ..     175     233 .. 0.71
   3 !   84.2   0.1   5.6e-27   2.1e-24     168     297 ..     262     399 ..     248     400 .. 0.83

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 7.8e-20
   TIGR02152   1 ivvvGSinvDlvlrvkrlpkpGetvkae....efkiaaGGKGANQAvaaarlg.....aevsmigkvGkDefgeellenlkkegidteyvkkvkktstGvAlilvdee.geNsIvvvaGaneel 114
                 ++vvGS+n+D++l v rlp +Ge ++       +  ++GGKG  QAvaaa+l      +++ ++g++G+D  ge+l+++l++eg+d+++   +++ ++G  +++ + + g  s +v  G+n  l
  MMETSP1061-20121228|2275_1  31 VLVVGSANADTFLPVARLPTEGENLTLLpgraPIVDVPGGKGCTQAVAAAKLLrdtphSKCLFLGQLGSDPAGEMLRSALEEEGVDCSHCGVHSDLPSGRGYVFWQADtGSVSAIVSGGSN-AL 153
                 79*********************87643222245567***************878888999******************************************987650555555555555.44 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.48
   TIGR02152 127 kesdlvllQlEipletveealkiakkag 154
                 +  ++vllQ E+p+ ++  ++++++  +
  MMETSP1061-20121228|2275_1 197 EGVRCVLLQREVPECVNLLVASCVRDYN 224
                 346899*******999999888877655 PP

  == domain 3    score: 84.2 bits;  conditional E-value: 5.6e-27
   TIGR02152 168 ldeellslvdiivpNetEaeiLtgie....vedledaekaaekllekgvkaviitlGskGallvskd....ekklipalkvkav.DttaAGDtFigalavaL.aegksledavrfanaaaalsVtrkGaqssiPtkeeve 297
                 ++e++l+l+d+ivpNe+Ea+ L+ ++    +e++ da++ a++l+++g+ +v++tlGs G+ll++++    + +   +   k v D+t+AGD+F +a+ava  +eg++++da+rfana  + sV  +Ga +s P ++ +e
  MMETSP1061-20121228|2275_1 262 ISEQMLALCDFIVPNESEAKRLVASAsssnTETTLDATHCAAALQDQGAGTVLVTLGSSGSLLLDANgdaiRAR--AVPCSKPVeDETGAGDCFRAAFAVAHtMEGRDVADAMRFANASGSCSVRVQGAVPSTPDRRAIE 399
                 5789******************987643336667789999************************9995322222..2233455559*************9861566*****************************99987 PP

>> TIGR02631  xylA_Arthro: xylose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   7.3e-22   2.7e-19      72     293 ..     541     757 ..     530     771 .. 0.89

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 7.3e-22
   TIGR02631  72 rfkkaldetGlkvpmvttnlfshpvfkdGgftsndrsvrryalrkvlrnidlaaelGaetyvlwgGreGaevdaakdvraaldrvrealdllaeyvedqGydlrfalepkpneprGdil.lptvGhalafieelerpelfGlnpevgheqmaglnfthgiaqalwaeklfhidlngqrg.ikfdqdlvfGagdlkaafflvdllesggydGprhfdykpsrted 293
                 + k+al++ Gl    v         f  G++  +d+ +r+ al+ + +  ++a +lG +  v+w+  +G ++    +  + +d++  a+  l++        +rf+le kp +     + +p+ G al +++e++r   +Gl  +vgh  mag n  ++ia     +klf i+ln+  +    +  l+fG+ +   a+ ++  l  +++ G  +fd  p+rt+ 
  MMETSP1061-20121228|2275_1 541 EAKEALEQEGLVAGAVCLRY--PSKFARGAMNHPDPALRAEALALTKEAAEVAQQLGCDEVVIWSAFDGYDYPFQVEYDEQWDQLVSAFRELCDT----FPSIRFSLEYKPTDENTRFFtVPSTGAALLLVDEIDRE-NMGLTLDVGHMLMAGENPGQSIAMVGRRGKLFGIQLNDGFTrLAAEDGLMFGSVHPSMALEIMYQLHRTNFAGHFYFDTFPQRTDP 757
                 56788999998877776544..44699*************************************************************9988755....4579********98777765389*************95.68***********************************97651456677************************************96 PP

>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.026       9.7      33      83 ..      67     123 ..      62     152 .. 0.74
   2 !   59.9   0.3   1.1e-19   3.9e-17     170     291 ..     263     391 ..     254     404 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.026
   TIGR03168  33 dagGKGinVarvlkel.....gaevvalgflGgft.gefiealleeegikadfvevk 83 
                  +gGKG + a + ++l       ++  lg lG ++ ge ++++leeeg++++   v+
  MMETSP1061-20121228|2275_1  67 VPGGKGCTQAVAAAKLlrdtpHSKCLFLGQLGSDPaGEMLRSALEEEGVDCSHCGVH 123
                 69****988877777722212334567777777743788999999999998877665 PP

  == domain 2    score: 59.9 bits;  conditional E-value: 1.1e-19
   TIGR03168 170 realkakplliKPNkeEleelvgrelkteee....vieaarellekGvenvlvSlGadGallvtkeg.alkaeapkve..vvstvGAGDsmvAgfllal.ekglsleealrlavAagsaaassegtelpd 291
                 +e + a  ++i PN++E ++lv ++ ++++e    ++++a  l+++G+ +vlv+lG++G+ll++++g a++a+a +++  v + +GAGD + A+f++a   +g ++++a+r+a A gs ++  +g+ +p+
  MMETSP1061-20121228|2275_1 263 SEQMLALCDFIVPNESEAKRLVASASSSNTEttldATHCAAALQDQGAGTVLVTLGSSGSLLLDANGdAIRARAVPCSkpVEDETGAGDCFRAAFAVAHtMEGRDVADAMRFANASGSCSVRVQGA-VPS 391
                 55556667899**********997775555545559999**************************9999999988876669**************987626788****************999994.333 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.051        19      33      82 ..      67     122 ..      64     151 .. 0.70
   2 !   57.0   0.2   9.1e-19   3.4e-16     171     292 ..     264     392 ..     254     404 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.051
   TIGR03828  33 dagGKGinVarvLkkl.....gvevvalgflGgft.geeiealleeegiktdfvev 82 
                  +gGKG + a + +kl       +++ lg lG+++ ge +++ leeeg+++    v
  MMETSP1061-20121228|2275_1  67 VPGGKGCTQAVAAAKLlrdtpHSKCLFLGQLGSDPaGEMLRSALEEEGVDCSHCGV 122
                 58****87666666652211233567777888776256677888999988876666 PP

  == domain 2    score: 57.0 bits;  conditional E-value: 9.1e-19
   TIGR03828 171 kvlkakplliKPNkeEleellgrelkteee....vieaarkllekgvenvlislGadGallvtke.galfakapkie..vkstvGAGDsmvAgfllal.ekglsleealrlavAvgaaaassegtelpdl 292
                 + + a  ++i PN+ E ++l+  + ++++e    ++++a  l+++g++ vl++lG++G+ll++++ +a++a+a+ ++  v + +GAGD   A+f++a+ ++g ++++a+r+a A g+ ++  +g+ +p+ 
  MMETSP1061-20121228|2275_1 264 EQMLALCDFIVPNESEAKRLVASASSSNTEttldATHCAAALQDQGAGTVLVTLGSSGSLLLDANgDAIRARAVPCSkpVEDETGAGDCFRAAFAVAHtMEGRDVADAMRFANASGSCSVRVQGA-VPST 392
                 55556678899*********99666544444444999**************************9956788888554334***************87652789999***************99994.4433 PP

>> TIGR02635  RhaI_grampos: L-rhamnose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   1.8e-18   6.8e-16      62     270 ..     530     741 ..     504     807 .. 0.82

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 1.8e-18
   TIGR02635  62 hipwdkvedyeelkeyaeelGlklGainsnlfqdddykfGslthpdkkirkkaidhllecvdiakktgskdlslwla.dGtnypGqddirkrkdrleeslaevyekleadmrllleykffepafyhtdvpdwGtayalskklGer.aevlvdlGhh.aqGtniefivatlldekklGgfdfns...rkyadddlivgaanpyelflilkevvrak 270
                 h      e y+e ke  e+ Gl  Ga+   l    ++  G++ hpd ++r  a++ + e  ++a+++g  ++ +w a dG +yp q +  ++ d+l  +++e+ ++++   r+ leyk  +       vp  G a++l++++      + +d+Gh    G n  + +a++ + +kl g ++n+   r  a+d l+ g+++p   + i++++ r++
  MMETSP1061-20121228|2275_1 530 HFGASVWESYQEAKEALEQEGLVAGAVC--LRYPSKFARGAMNHPDPALRAEALALTKEAAEVAQQLGCDEVVIWSAfDGYDYPFQVEYDEQWDQLVSAFRELCDTFP-SIRFSLEYKPTDENTRFFTVPSTGAALLLVDEIDREnMGLTLDVGHMlMAGENPGQSIAMVGRRGKLFGIQLNDgftRLAAEDGLMFGSVHPSMALEIMYQLHRTN 741
                 555566799*****************97..556788999************************************988**************************9986.699******9999988889*************9755156789****83579**********************6444778*******************9997765 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0025      0.94      62      95 ..      89     122 ..      22     129 .. 0.68
   2 !   45.4   0.1   3.3e-15   1.2e-12     191     306 ..     270     392 ..     260     398 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0025
   TIGR02198  62 aevvlvgvvGkDeagkaleellkeegietsellk 95 
                 +++ ++g  G+D ag+ l+++l+eeg+++s++  
  MMETSP1061-20121228|2275_1  89 SKCLFLGQLGSDPAGEMLRSALEEEGVDCSHCGV 122
                 68899***********************988755 PP

  == domain 2    score: 45.4 bits;  conditional E-value: 3.3e-15
   TIGR02198 191 atlltPNrkEleeavg..aveeeeelv..kaaeklleeleleallvTrsekGmtllekekevlhlpaa..akevyDVtGAGDtViavlalal.aagasleeaaelaNaaagvvvgklGtatvs 306
                 +  + PN++E++++v   + ++ e  +  +++++ l++  + ++lvT + +G  ll+ +++++ + a+  +k v D tGAGD   a++a+a+ ++g ++++a+++aNa+++  v+  G++  +
  MMETSP1061-20121228|2275_1 270 CDFIVPNESEAKRLVAsaSSSNTETTLdaTHCAAALQDQGAGTVLVTLGSSGSLLLDANGDAIRARAVpcSKPVEDETGAGDCFRAAFAVAHtMEGRDVADAMRFANASGSCSVRVQGAVPST 392
                 67899**********974223333333113455666778899*******************999998633789****************9862689******************999987655 PP

>> TIGR02629  L_rham_iso_rhiz: L-rhamnose catabolism isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.6e-10   9.6e-08     133     371 ..     565     803 ..     555     809 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.6e-10
   TIGR02629 133 kfgslshtdaatrrqavehnlecieigkalgskaltvwig.dgsnfpgqsnftraferyldamkavyaglpddwklftehkmyepafystvvqdwgtnyliakelgdkafcl.vdlghha.pnvniemivarliqfkklggfhfnds...kygdddldagsidpyrlflvfnelvdaeargaegfdpahmldqshnvtdpieslllsavevrrayaqa.llvdrkalegyqeendalmatetlkaa 371
                   g++ h d a r++a+    e+ e+ + lg   + +w   dg ++p q+++   +++ ++a++++  ++p+  ++  e+k  +       v   g+  l+ +e+  + + l +d+gh      n    +a + + +kl g+++nd       +d l  gs++p   + ++ +l  ++      f     +d   + tdpi+        v+r +  a   +d   l+   +e da+ a e + aa
  MMETSP1061-20121228|2275_1 565 ARGAMNHPDPALRAEALALTKEAAEVAQQLGCDEVVIWSAfDGYDYPFQVEYDEQWDQLVSAFRELCDTFPS-IRFSLEYKPTDENTRFFTVPSTGAALLLVDEIDRENMGLtLDVGHMLmAGENPGQSIAMVGRRGKLFGIQLNDGftrLAAEDGLMFGSVHPSMALEIMYQLHRTN------FAGHFYFDTFPQRTDPIKEAECNIRRVKRFWKAAsEGIDEVVLQKIHDEHDAVGALELVDAA 803
                 4599**********************************755******************************7.6888899987766666667889**********999988747****7513456667777777889*********7321357899********99998888887655......4455667788889*****9999999***9986551579**************9999887776 PP

>> TIGR02630  xylose_isom_A: xylose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.1e-09   1.5e-06     146     302 ..     562     714 ..     533     760 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4.1e-09
   TIGR02630 146 pryvaGaatspdadvfayaaaqvkkalevtkklggenyvfWGGreGyetLlntdlkleldnlarflklavdyakkigfkgqlliePkPkePtkhqyDfDaatvlaflkkydLdkdfklnieanhatLaghtfehelrvarelgllGsiDanrgdlll 302
                  ++++Ga   pd+ + a a a  k+a ev+++lg ++ v+W   +Gy+  ++ + + + d+l + ++   d   +i f+    +e kP +  +  + + ++ +   l     ++++ l +++ h  +ag      +++    g+l  i  n g + l
  MMETSP1061-20121228|2275_1 562 SKFARGAMNHPDPALRAEALALTKEAAEVAQQLGCDEVVIWSAFDGYDYPFQVEYDEQWDQLVSAFRELCDTFPSIRFS----LEYKPTDENTRFFTVPSTGAALLLVDEIDRENMGLTLDVGHMLMAGENPGQSIAMVGRRGKLFGIQLNDGFTRL 714
                 58************************************************************99999999999999875....899***999999988877666666555556789**********************9999999999999996544 PP

>> TIGR03234  OH-pyruv-isom: hydroxypyruvate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       4.5   1.7e+03     152     183 ..     272     303 ..     270     307 .. 0.83
   2 !   18.1   0.0   7.7e-07   0.00029      26     206 ..     518     709 ..     506     752 .. 0.72

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 4.5
   TIGR03234 152 fflesteealavidevGsenvklqyDlYhlqi 183
                 f++ + +ea +++ ++ s+n +  +D  h + 
  MMETSP1061-20121228|2275_1 272 FIVPNESEAKRLVASASSSNTETTLDATHCAA 303
                 77778889999999999999999999999775 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 7.7e-07
   TIGR03234  26 aGfkavellfPy......dveaeelkaeledaglelvlfnlpaGdweageRGiavlpdr..eeeFregvakaieyaraLgvkkv...nclaGk.rpegvdeeeakatlvenlryaakklekegvtllieainkldiPgfflesteealavidevGsenvklqyDlYhlqileedlartleel..aakiahvqiaD 206
                  G++ v++ +P         + +e k++le++gl      l     ++  RG++ +pd   ++e  +  ++a+e a+ Lg+ +v    ++ G   p +v+ +e++  lv  +r   +++ ++   l   + ++ ++  f + st +al ++de+ +en+ l +D+ h+ + +e+  ++++      k+  +q+ D
  MMETSP1061-20121228|2275_1 518 RGLTCVDFNYPQhfgasvWESYQEAKEALEQEGLVAGAVCLRYP--SKFARGAMNHPDPalRAEALALTKEAAEVAQQLGCDEVviwSAFDGYdYPFQVEYDEQWDQLVSAFRELCDTFPSIRFSLEYKPTDE-NTRFFTVPSTGAALLLVDEIDRENMGLTLDVGHMLMAGENPGQSIAMVgrRGKLFGIQLND 709
                 57777777777744444222345556666666665544444322..3446888888775114556667789**********9983334566752578999999999999999999999988777666666543.34456688999****************************9888876541144555666666 PP

>> TIGR00097  HMP-P_kinase: phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   5.3e-06     0.002     120     231 ..     262     376 ..     258     388 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 5.3e-06
   TIGR00097 120 lkkkllplatlvtPNlpEaeallg....vkikteedlkkaakklaelgakavlikGGhledeeavdvlydeeeveilkaerietkntHGtGctlsaaia.aelakglelkeavkeak 231
                 + +++l l + + PN  Ea+ l+      + +t+ d+++ a +l++ ga +vl++ G +  +   d   d  ++++   ++    +t G+G+ + aa a a+  +g ++++a++ a+
  MMETSP1061-20121228|2275_1 262 ISEQMLALCDFIVPNESEAKRLVAsassSNTETTLDATHCAAALQDQGAGTVLVTLGSSG-SLLLDANGDAIRARAVPCSKPVEDET-GAGDCFRAAFAvAHTMEGRDVADAMRFAN 376
                 6789*****************987321234455567888999*************99886.33566644444555555555555545.9999998776438999********99886 PP

>> TIGR00687  pyridox_kin: pyridoxal kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.9e-06    0.0022     132     244 ..     262     372 ..     245     380 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.9e-06
   TIGR00687 132 lvekaiPvaDiitPnlfelelLter....kvetleealaaadaLiakGpkivlvkhLvragksrdrsieilvvtaegaweiskpllqfdrepvGvGDliaallla.kllrgkslkeal 244
                 + e+ +  +D i Pn  e++ L+      + et  +a   a aL+++G+ +vlv+ L + g+      ++ +     a+ +skp  +      G GD + a + + + ++g+   +a+
  MMETSP1061-20121228|2275_1 262 ISEQMLALCDFIVPNESEAKRLVASasssNTETTLDATHCAAALQDQGAGTVLVT-LGSSGSLLLD-ANGDA-IRARAVPCSKPVEDE----TGAGDCFRAAFAVaHTMEGRDVADAM 372
                 56889999***********99976511114566778888999***********98.5555555444.23333.344567788887655....89999998888773445565555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.47
# Mc/sec: 2291.56
//
Query:       MMETSP1061-20121228|2287_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 569.64
//
Query:       MMETSP1061-20121228|2288_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 833.18
//
Query:       MMETSP1061-20121228|2289_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 1069.11
//
Query:       MMETSP1061-20121228|2293_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 1256.34
//
Query:       MMETSP1061-20121228|2295_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.4   0.1    0.00022   18.7   0.1    1.6  1  TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
     0.0019   15.7   0.1     0.0046   14.4   0.0    1.4  1  TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
     0.0099   13.3   1.4      0.019   12.4   1.0    1.7  1  TIGR02984 Sig-70_plancto1: RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1
  ------ inclusion threshold ------
       0.02   12.0   0.7      0.085    9.9   0.0    1.9  2  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
      0.032   11.7   2.0       0.04   11.4   0.0    1.7  2  TIGR02392 rpoH_proteo: alternative sigma factor RpoH


Domain annotation for each model (and alignments):
>> TIGR02937  sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   2.7e-07   0.00022     129     164 ..      84     119 ..       1     120 [. 0.73

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.7e-07
   TIGR02937 129 ryleglslkeiAeelgisqetvsrilkraikkLkkk 164
                 r+ e ++  e+++++++s e  +r+ ++a+ kL+++
  MMETSP1061-20121228|2295_1  84 RFGEAMTFTEVGKKMQVSAEYTRRLCHKALGKLQQA 119
                 4599******************************97 PP

>> TIGR02393  RpoD_Cterm: RNA polymerase sigma factor RpoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.6e-06    0.0046     195     233 ..      87     125 ..      79     129 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.6e-06
   TIGR02393 195 kektleevgkefnvtrerirqieskalrklrhpskskkl 233
                 + +t+ evgk+++v+ e  r++  kal kl++++++ +l
  MMETSP1061-20121228|2295_1  87 EAMTFTEVGKKMQVSAEYTRRLCHKALGKLQQAAEDGTL 125
                 678****************************99877665 PP

>> TIGR02984  Sig-70_plancto1: RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   1.0   2.3e-05     0.019     152     188 ..      84     120 ..       1     121 [. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.3e-05
   TIGR02984 152 rhleglslaevaerldkseaavsklylRalkrLrevl 188
                 r+ e++ ++ev++++++s +  + l ++al +L++ +
  MMETSP1061-20121228|2295_1  84 RFGEAMTFTEVGKKMQVSAEYTRRLCHKALGKLQQAA 120
                 7789*****************************9975 PP

>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.6     0.093        76      37      69 ..       3      35 ..       1      81 [. 0.68
   2 ?    9.9   0.0    0.0001     0.085     268     297 ..      87     116 ..      82     117 .. 0.93

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.093
   TIGR02997 37 kkeeleeqlekepskeelakavdlsekelkkal 69
                ++++ ++q++++ + +++ + ++ ++ el+++l
  MMETSP1061-20121228|2295_1  3 QQQQQQQQQQRNLAGQSIKERANRQLLELEDQL 35
                455555555555566666666666666655554 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.0001
   TIGR02997 268 eeltlaeigeelnlsrervrqiekkalkkl 297
                 e++t +e+g+++++s e  r++ +kal kl
  MMETSP1061-20121228|2295_1  87 EAMTFTEVGKKMQVSAEYTRRLCHKALGKL 116
                 789************************998 PP

>> TIGR02392  rpoH_proteo: alternative sigma factor RpoH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.4      0.21   1.7e+02     204     222 ..       5      23 ..       1      70 [. 0.60
   2 ?   11.4   0.0   4.9e-05      0.04     235     267 ..      87     119 ..      79     122 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.21
   TIGR02392 204 eeekqkeklkealeklder 222
                 ++++q+++ + a ++++er
  MMETSP1061-20121228|2295_1   5 QQQQQQQQRNLAGQSIKER 23 
                 2222222222233333333 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 4.9e-05
   TIGR02392 235 ekltLeelaaeygvsaeRvRqiekkalkklkaa 267
                 e++t  e+ ++++vsae  R + +kal kl++a
  MMETSP1061-20121228|2295_1  87 EAMTFTEVGKKMQVSAEYTRRLCHKALGKLQQA 119
                 5789**************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.45
# Mc/sec: 384.23
//
Query:       MMETSP1061-20121228|2297_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 1457.75
//
Query:       MMETSP1061-20121228|2303_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.41
# Mc/sec: 666.38
//
Query:       MMETSP1061-20121228|2301_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-06   26.0   4.7    1.6e-06   25.4   1.4    2.4  2  TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family
    0.00014   20.2   0.1    0.00043   18.6   0.0    1.8  2  TIGR01410 tatB: twin arginine-targeting protein translocase TatB


Domain annotation for each model (and alignments):
>> TIGR01411  tatAE: twin arginine-targeting protein translocase, TatA/E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   1.4   7.9e-10   1.6e-06       1      44 [.      65     108 ..      65     118 .. 0.91
   2 ?   -0.9   0.0      0.13   2.8e+02      28      39 ..     116     126 ..     115     132 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 7.9e-10
   TIGR01411   1 glsatelliilvvilLlFGakKLpelgrdlGkaikeFKkalkee 44 
                 gl+a+e+ iilv ++ l G++KL++lg+d+Gk  +e K+  ke 
  MMETSP1061-20121228|2301_1  65 GLGAPEIGIILVAAAFLLGPDKLASLGKDAGKIAGELKEVPKEF 108
                 689*****************************999999866665 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.13
   TIGR01411  28 rdlGkaikeFKk 39 
                 ++++ka+ke K+
  MMETSP1061-20121228|2301_1 116 EAAAKAMKE-KD 126
                 678888887.55 PP

>> TIGR01410  tatB: twin arginine-targeting protein translocase TatB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.33   6.8e+02      56      71 ..      46      61 ..      37      63 .. 0.76
   2 !   18.6   0.0   2.1e-07   0.00043       1      60 [.      64     124 ..      64     138 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.33
   TIGR01410 56 eelkeelkeveklril 71
                + l++++k v +++ +
  MMETSP1061-20121228|2301_1 46 ASLQRQRKSVAQVQTM 61
                5688888888887765 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 2.1e-07
   TIGR01410   1 fdiGfsELlviavValvvlGPerLPkairavgklvralrklasdvknelde.elkleelke 60 
                 f++G  E+ +i+v a  +lGP++L  + +++gk+ ++l+++ +++++ ++e e  ++++ke
  MMETSP1061-20121228|2301_1  64 FGLGAPEIGIILVAAAFLLGPDKLASLGKDAGKIAGELKEVPKEFQAGMAEgEAAAKAMKE 124
                 789999****************************************998763555666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 733.86
//
Query:       MMETSP1061-20121228|2309_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.3  66.5      0.018   12.1  46.1    1.1  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1  46.1   4.5e-06     0.018     109     230 ..       3      75 ..       1      79 [] 0.38

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.5e-06
   TIGR02794 109 kaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeakKakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeaea 230
                 +++k+ e++ak+k+e+k++aee+k++ +aEa+akaeaeaKa++k++ee++k+ E+e ka+a+aeakkk+E                                                  ++
  MMETSP1061-20121228|2309_1   3 EEKKRLEAEAKAKAEAKQKAEEEKKRLEAEARAKAEAEAKAKEKKAEELRKRIEAEEKARAEAEAKKKEE-------------------------------------------------EDR 75 
                 2222222222222333333333333445555555555555533444445555555555555555555554.................................................222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       763  (0.186007); expected 82.0 (0.02)
Passed bias filter:                      390  (0.0950756); expected 82.0 (0.02)
Passed Vit filter:                        90  (0.0219405); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 289.64
//
Query:       MMETSP1061-20121228|2304_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|2308_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00032   18.5   0.5    0.00058   17.6   0.3    1.4  1  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.3   1.4e-07   0.00058     154     269 ..     270     375 ..     240     402 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.4e-07
   TIGR03296 154 lvgdytiqpedagvgVlaHElGHdlglPDlYdtsydgggetpvGdWslMssGswagkgstppdmkawlkeklgWlneqsvatkrgkttlakagavkvlklavtk.nan.ealllenrt 269
                 +v +y +++ +++v+V  HE+GH++gl +  d     + ++++G  ++ s        ++   +++ + ++lgW ++++ + +  +    +++ + ++ ++v+  ++n +al+++ + 
  MMETSP1061-20121228|2308_1 270 KV-SYYNDKSASSVAVHMHEIGHNFGLAHSGDG--LLEYNDKTGTMGIASM---H--DDFHRCFNQAKSYQLGWYDDKVKTIDPLS----SQSVHDFVLNGVAAyKENdNALVVVRLD 375
                 33.4566666667****************9996..3333346887777776...3..4699999*************996665555....4444444444444442221333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.11s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 2136.38
//
Query:       MMETSP1061-20121228|2315_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.6    5.4  15.1        4.9    5.3  10.4    1.0  1  TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family


Domain annotation for each model (and alignments):
>> TIGR02898  spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3  10.4    0.0012       4.9      22      58 ..       5      43 ..       1      53 [. 0.26

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0012
   TIGR02898 22 skdnnnveeknveekaangentakdtnq...geklevadk 58
                +  nnn+++kn++++ +n++n+++d++    ++ + +a  
  MMETSP1061-20121228|2315_1  5 N-SNNNSNNKNNNKTSNNKNNNKNDNQTkpnTTTMTAAAA 43
                2.22222222222222221111111111111122222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.36
# Mc/sec: 205.32
//
Query:       MMETSP1061-20121228|2314_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1443.88
//
Query:       MMETSP1061-20121228|2313_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 913.36
//
Query:       MMETSP1061-20121228|2316_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1271.60
//
Query:       MMETSP1061-20121228|2317_1  [L=838]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 2212.14
//
Query:       MMETSP1061-20121228|2318_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1308.41
//
Query:       MMETSP1061-20121228|2319_1  [L=2482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       445  (0.108484); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.43u 0.23s 00:00:01.66 Elapsed: 00:00:01.02
# Mc/sec: 3211.73
//
Query:       MMETSP1061-20121228|2321_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|2325_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|2325_2  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|2323_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   12.3   2.0        2.2    6.1   0.4    2.1  2  TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family


Domain annotation for each model (and alignments):
>> TIGR03592  yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.4   0.00055       2.2     116     145 ..      30      66 ..       3      90 .. 0.60
   2 ?    5.9   0.0   0.00061       2.5      19      58 ..     114     153 ..     107     157 .] 0.80

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00055
   TIGR03592 116 ialla.......iyilpvlaglttflqqklsapkpad 145
                 ++++a        +i++++++++t + + ++ +k++d
  MMETSP1061-20121228|2323_1  30 ATITAtitatitATIMATIMAMATTTATTMAXNKSSD 66 
                 2222222333222377777777666666666344333 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00061
   TIGR03592  19 plsakqiksmrkmqelqpklkeiqekykedrqklqqemmk 58 
                 p ++  i  +r+ ++l+ +l+++ ek+++d+q  +  + k
  MMETSP1061-20121228|2323_1 114 PKNVDVIALQRENEQLRRQLAALSEKHGNDSQGSSSSTDK 153
                 566677788999999***************9987776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       430  (0.104827); expected 82.0 (0.02)
Passed bias filter:                      219  (0.0533886); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 740.08
//
Query:       MMETSP1061-20121228|2326_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 709.44
//
Query:       MMETSP1061-20121228|2328_1  [L=1279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       365  (0.088981); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.20s 00:00:00.80 Elapsed: 00:00:00.63
# Mc/sec: 2679.59
//
Query:       MMETSP1061-20121228|2330_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1061-20121228|2336_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.005   13.5   0.0     0.0061   13.2   0.0    1.0  1  TIGR00846 caca2: calcium/proton exchanger


Domain annotation for each model (and alignments):
>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.5e-06    0.0061      91     161 ..      20      92 ..      16     103 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.5e-06
   TIGR00846  91 kegkvevvrasllgsils..nlllvlGlslllGGiknirveqefdlkaaqvnlallllailslvlPallkaak 161
                 ++++   +r+s++g i+   +  l+    + +GGi+   +  +++++aa++ la+++l ++ lv+ al    k
  MMETSP1061-20121228|2336_1  20 RDASNFCARYSVVGLIFMsmVWTLLTYEPFYIGGIEDYEQATSNAFGAAKTFLAVFILSVIYLVFDALTGEDK 92 
                 6677778999****986512335566668*******9998999*********************988766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 577.45
//
Query:       MMETSP1061-20121228|2338_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1319.89
//
Query:       MMETSP1061-20121228|2333_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-18   62.4   0.7    1.3e-06   25.3   0.0    3.3  3  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    4.6e-17   59.6   1.1    1.1e-13   48.5   0.0    2.8  2  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    9.2e-14   48.9   0.0     0.0004   17.1   0.0    3.2  3  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    4.6e-13   47.3   0.1    8.4e-11   39.9   0.0    2.4  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    4.9e-12   43.3   1.0    2.8e-05   21.0   0.0    2.6  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
      4e-06   24.0   0.0    1.5e-05   22.1   0.1    1.8  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    5.5e-06   23.2   0.4    2.3e-05   21.1   0.3    1.8  2  TIGR02734 crtI_fam: phytoene desaturase
      1e-05   22.3   0.1    1.9e-05   21.4   0.1    1.4  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
      2e-05   21.4   0.1       0.38    7.3   0.0    3.2  3  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
    2.5e-05   21.2   0.5       0.11    9.2   0.0    3.1  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    0.00011   17.6   0.0    0.00015   17.1   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00017   17.9   0.1    0.00025   17.4   0.0    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00019   18.7   0.8    0.00055   17.2   0.2    1.9  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    0.00025   17.8   0.6    0.00055   16.7   0.2    1.7  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00025   18.1   0.5     0.0029   14.6   0.3    2.2  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    0.00035   17.7   0.5    0.00069   16.7   0.0    1.6  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00041   17.1   0.0    0.00064   16.4   0.0    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    0.00067   16.3   0.2     0.0018   14.8   0.1    1.5  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00089   16.3   0.1     0.0015   15.5   0.1    1.3  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0011   14.6   0.1     0.0017   14.0   0.0    1.2  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0013   15.3   0.3     0.0036   13.9   0.1    1.8  2  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0017   14.7   0.1     0.0026   14.2   0.0    1.1  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0018   14.9   0.0     0.0027   14.4   0.0    1.2  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
     0.0022   15.0   0.2     0.0032   14.4   0.1    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
      0.004   13.8   3.8       0.65    6.5   0.0    3.6  4  TIGR02028 ChlP: geranylgeranyl reductase
     0.0044   13.7   0.1      0.015   11.9   0.0    1.9  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
     0.0066   13.0   0.0     0.0096   12.4   0.0    1.3  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
  ------ inclusion threshold ------
      0.014   12.2   0.0      0.025   11.4   0.0    1.3  1  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
      0.027   11.1   0.0        2.6    4.5   0.0    2.1  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
      0.033   11.0   0.0      0.052   10.4   0.0    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   2.9e-05     0.004       3      33 ..      17      46 ..      15      58 .. 0.88
   2 !   25.3   0.0   9.8e-09   1.3e-06     108     176 ..      97     170 ..      78     179 .. 0.85
   3 !   19.5   0.1   5.5e-07   7.5e-05     278     314 ..     313     349 ..     311     381 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.9e-05
   TIGR01988  3 vIvGgGlvGlalAlaLassadlkvalveaka 33
                +++G+G++Gl+++l La+++ +kv lve+ +
  MMETSP1061-20121228|2333_1 17 IVIGAGPAGLSVSLGLAHRG-WKVILVEKYE 46
                89***************777.******9865 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 9.8e-09
   TIGR01988 108 vlqqaLlealqekkn..kvtllapaeveelere...sdaveltlsdgetleakLlvgADGanSkvrqaagiktt 176
                  +++aLle++++      v+l++  ++e +  e   ++ v+ ++++get+e ++l+gADG +S vr+ +g++ t
  MMETSP1061-20121228|2333_1  97 MMRDALLERVRKMVAanVVDLKMGLSIEDILDEgdsRNGVTARFTNGETIEGDVLIGADGVHSSVRKILGLSPT 170
                 567888888888776667888888888888877888999*****************************999876 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 5.5e-07
   TIGR01988 278 ervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlae 314
                 + v liGdAAh +    GQG N+ ++D+  L ++l  
  MMETSP1061-20121228|2333_1 313 NNVTLIGDAAHAMRATDGQGGNMAFEDAIVLCRLLGS 349
                 6789*************************99998865 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1    0.0012      0.16       5      67 ..      18      79 ..      15     103 .. 0.86
   2 !   48.5   0.0   7.9e-16   1.1e-13     131     345 ..     131     358 ..      98     395 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0012
   TIGR03219  5 iiGGGiaGvalalelsksshlnvklfeaapafgevGaGvsfGanavraieglGlaeaykkvad 67
                +iG G aG++++l+l+++   +v l e   +f   Ga   +G n ++a+e++  +   +++ d
  MMETSP1061-20121228|2333_1 18 VIGAGPAGLSVSLGLAHRG-WKVILVEKYESFEVRGASFGMGRNGIKALEEIHPGTVQHEMID 79
                89*************9765.69***************************99877776666666 PP

  == domain 2    score: 48.5 bits;  conditional E-value: 7.9e-16
   TIGR03219 131 eqaeevevsfedGteyradlligadGiksalrdyvlegagqaaveprfsGts..ayrGlvdsaelreayraag.ldehlvd.....vpqmylgldghiltfpvrkGklinvvafvsdrsqakptwpsdapwvreaskre.mlda.fagwgdaarvllelieaptl..walhdlaelpgyvhGr..valiGdaahamlphqGaGaGqGledayllarlledtkleaedlp 345
                 +  + v+  f++G + + d+ligadG++s++r+ +  +  + + +  f Gt+     G  +s e  e +  ++   +hlv+     +   y g    +++f  +    +  v  ++d++  + t  +   +v++ +k+e  l++ +a ++++++  l++  +  +  ++   l++l g   G+  v+liGdaaham    G G    +eda +l rll+  +l ++ l+
  MMETSP1061-20121228|2333_1 131 DSRNGVTARFTNGETIEGDVLIGADGVHSSVRKILGLSPTKYTGTKIFRGTVlvNLDGNDESVEGTENLSSESsRLQHLVHkgitpLYATYPGMVFFVISFHSQTPGRMCWVCATTDKNFDTET-TDVRTFVKDNEKDEeKLASiLAIFDESSEDSLQSYTEIRVadFSDDALSHLDGRWGGKnnVTLIGDAAHAMRATDGQGGNMAFEDAIVLCRLLGSEELCSSILD 358
                 45678999************************98755554444455555554112334445555555555443123455542210144556677778889988876666666667888777764.4455677777665434433134455555555555444333014555678888877554339*******************************998765443332 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   3.4e-05    0.0047       3      33 ..      17      46 ..      15      59 .. 0.91
   2 !   17.1   0.0   2.9e-06    0.0004     126     173 ..     120     170 ..      90     185 .. 0.72
   3 !   14.4   0.0     2e-05    0.0028     276     313 ..     313     350 ..     308     378 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.4e-05
   TIGR01984  3 iivGgglvGlslAlaLsrksklkialieaks 33
                i++G+g++Gls++l L++ + +k+ l+e+ +
  MMETSP1061-20121228|2333_1 17 IVIGAGPAGLSVSLGLAHRG-WKVILVEKYE 46
                89******************.*******865 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.9e-06
   TIGR01984 126 paelkeierekde...aevkldneqkleakLlvaAdGanskvreslsiaee 173
                   ++++i  e d+   ++ ++ n++++e+++l+ AdG +s vr+ l +  +
  MMETSP1061-20121228|2333_1 120 GLSIEDILDEGDSrngVTARFTNGETIEGDVLIGADGVHSSVRKILGLSPT 170
                 445555554444444489999***********************9988755 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 2e-05
   TIGR01984 276 ervvlignaAqtlhPiAgQGfNlGlrDvltLaevleda 313
                 + v lig+aA+ +    gQG N+   D++ L ++l ++
  MMETSP1061-20121228|2333_1 313 NNVTLIGDAAHAMRATDGQGGNMAFEDAIVLCRLLGSE 350
                 7899***************************9998765 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   6.1e-13   8.4e-11       4     161 ..      17     171 ..      16     194 .. 0.75
   2 ?    5.1   0.0     0.025       3.4     261     287 ..     311     337 ..     258     342 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 6.1e-13
   TIGR02032   4 vvvGaGpaGssaAlrlakkGlrVlllekkelprekeCggalskraveelelpkelivnevr...kariispngekveieeeeeealvidRkefDelLaekAqeagaelllettvlsveied.ekvkvevredekkevtakivigAdGakskvakklglkkek 161
                 +v+GaGpaG s+ l la+ G +V+l+ek e  ++   + ++  + ++ le+ +   v++     ++ i +p+g ++ i++  +      R+++ e + ++++ + ++l ++  ++++  e+  +  v++r  + ++++++++igAdG +s v+k lgl + k
  MMETSP1061-20121228|2333_1  17 IVIGAGPAGLSVSLGLAHRGWKVILVEKYESFEVRGASFGMGRNGIKALEEIHPGTVQHEMidsGKGIPLPSG-TLVIPWWMM------RDALLERVRKMVAANVVDLKMGLSIEDILDEGdSRNGVTARFTNGETIEGDVLIGADGVHSSVRKILGLSPTK 171
                 9*********************************999999********9998844444333355666777777.444555435......5555555666666666777777777666555555555555655679**********************87443 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.025
   TIGR02032 261 vtgnvllvGDAAglVkPltGeGIayam 287
                  ++nv l+GDAA    ++ G G ++a 
  MMETSP1061-20121228|2333_1 311 GKNNVTLIGDAAHAMRATDGQGGNMAF 337
                 5789****************9977665 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0         3     4e+02       4      22 ..      17      35 ..      16      55 .. 0.71
   2 !   21.0   0.0   2.1e-07   2.8e-05     121     196 ..     100     172 ..      90     184 .. 0.72
   3 !   20.2   0.1   3.7e-07   5.1e-05     333     368 ..     313     348 ..     302     352 .. 0.92

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3
   TIGR01989  4 vivGgGlvGlalAaalkkn 22
                ++ G+G++Gl++  +l++ 
  MMETSP1061-20121228|2333_1 17 IVIGAGPAGLSVSLGLAHR 35
                688*******999988764 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 2.1e-07
   TIGR01989 121 asllerlkeeksdn.vkvknkaklksvtlpkkspndnsnlvkikledgetlktklliGADGanSkvRkaanikvtgw 196
                 ++ller+++  + n v++k+   ++++     ++ d+ n v+ + ++get++ ++liGADG+ S vRk  +++ t +
  MMETSP1061-20121228|2333_1 100 DALLERVRKMVAANvVDLKMGLSIEDI--L--DEGDSRNGVTARFTNGETIEGDVLIGADGVHSSVRKILGLSPTKY 172
                 555555555442220222222222222..2..4599999******************************99987655 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 3.7e-07
   TIGR01989 333 ervALvGDAAHrvHPLAGqGvNlGfsDvesLvkala 368
                 + v L+GDAAH +    GqG N+ f+D+ +L + l+
  MMETSP1061-20121228|2333_1 313 NNVTLIGDAAHAMRATDGQGGNMAFEDAIVLCRLLG 348
                 7899************************99988775 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   1.1e-07   1.5e-05       1      33 [.      15      47 ..      15      56 .. 0.89
   2 ?   -2.1   0.0       2.4   3.2e+02     157     212 ..     109     173 ..      74     183 .. 0.62

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.1e-07
   TIGR03197  1 kvavIGaGiAgaalalsLarrGvqvtllekdek 33
                +++vIGaG Ag+++ l La rG++v l+ek e+
  MMETSP1061-20121228|2333_1 15 TAIVIGAGPAGLSVSLGLAHRGWKVILVEKYES 47
                589**************************9876 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.4
   TIGR03197 157 kaki.elklhfnteitslerdaeg...WqllsengevlaasvvVlAngaqakq.....leqtael 212
                   ++  + l+++  i+++  ++++    ++  +nge+++ +v++ A g ++       l++t++ 
  MMETSP1061-20121228|2333_1 109 MVAAnVVDLKMGLSIEDILDEGDSrngVTARFTNGETIEGDVLIGADGVHSSVrkilgLSPTKYT 173
                 33334457777777777776444333489999999999999999999987654344445555555 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.3   1.7e-07   2.3e-05       1      33 [.      16      48 ..      16      58 .. 0.89
   2 ?   -0.7   0.0      0.69        94     220     288 ..     102     171 ..      99     184 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.7e-07
   TIGR02734  1 avViGaGlgGLAlAirLaaaGievtvlekrdkp 33
                a+ViGaG +GL++++ La  G++v ++ek +++
  MMETSP1061-20121228|2333_1 16 AIVIGAGPAGLSVSLGLAHRGWKVILVEKYESF 48
                69**************************98765 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.69
   TIGR02734 220 lvealaklaedlggelrlnaeveeieteg..erataveledgerleadavvsnaDlvhtykkllreeerrr 288
                 l e + k+++   ++l++  + e i  eg   +  +++ ++ge++e d+++ +  ++ + +k+l+ ++  +
  MMETSP1061-20121228|2333_1 102 LLERVRKMVAANVVDLKMGLSIEDILDEGdsRNGVTARFTNGETIEGDVLIGADGVHSSVRKILGLSP-TK 171
                 5566666666666666677777777777622334455678999********99999999999999887.44 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   1.4e-07   1.9e-05       3      50 ..      16      63 ..      15      76 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 1.4e-07
   TIGR01377  3 vivvGaGvmGsaaayqLakrgkkvLLleqfdlphsrGsshGesriirk 50
                +iv+GaG  G + +  La rg kv+L+e+++    rG+s G  r   k
  MMETSP1061-20121228|2333_1 16 AIVIGAGPAGLSVSLGLAHRGWKVILVEKYESFEVRGASFGMGRNGIK 63
                7****************************************9986555 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0028      0.38       6      40 ..      17      51 ..      13      77 .. 0.86
   2 ?    2.9   0.0     0.061       8.3     139     169 ..     136     165 ..      98     177 .. 0.75
   3 !    7.3   0.0    0.0029      0.39     281     314 ..     315     348 ..     308     368 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0028
   TIGR02360  6 aiigaGpsGlllgqllhkaGidavilerksrdyvl 40
                 +igaGp+Gl ++  l ++G +++++e++++  v 
  MMETSP1061-20121228|2333_1 17 IVIGAGPAGLSVSLGLAHRGWKVILVEKYESFEVR 51
                689*************************9876665 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.061
   TIGR02360 139 vtfekdgeekrldcdfiaGcdGfhGvsrksi 169
                 vt +   + ++++ d ++G+dG h   rk +
  MMETSP1061-20121228|2333_1 136 VTARF-TNGETIEGDVLIGADGVHSSVRKIL 165
                 44433.345689*************999866 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0029
   TIGR02360 281 lflaGdaahivpptGakGlnlaasdvaylyeall 314
                 + l Gdaah +  t  +G n+a  d ++l + l 
  MMETSP1061-20121228|2333_1 315 VTLIGDAAHAMRATDGQGGNMAFEDAIVLCRLLG 348
                 5799************************998774 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00084      0.11       4      32 ..      17      45 ..      14      52 .. 0.92
   2 !    7.2   0.0    0.0034      0.47     139     165 ..     143     169 ..     108     177 .. 0.87
   3 ?    1.4   0.0       0.2        27     264     288 ..     313     337 ..     305     386 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00084
   TIGR02023  4 lviGggpsGaaaaetLakagievillere 32
                +viG+gp+G + +  La+ g +vil+e+ 
  MMETSP1061-20121228|2333_1 17 IVIGAGPAGLSVSLGLAHRGWKVILVEKY 45
                89*************************85 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0034
   TIGR02023 139 kksveadvviGaDGakskvakelglgk 165
                  +++e dv iGaDG +s+v k lgl++
  MMETSP1061-20121228|2333_1 143 GETIEGDVLIGADGVHSSVRKILGLSP 169
                 467999***************999985 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.2
   TIGR02023 264 ervvLvGDaaGlvakasGeGiyyam 288
                 + v L+GDaa  +  + G G   a+
  MMETSP1061-20121228|2333_1 313 NNVTLIGDAAHAMRATDGQGGNMAF 337
                 4599**************9976665 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.1e-06   0.00015     533     570 ..       9      46 ..       2      52 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.1e-06
   TIGR03315 533 lksekhkvaviGaGPaGlsagyflaraGlpvtvfekke 570
                 + s+k+   viGaGPaGls+++ la  G +v ++ek e
  MMETSP1061-20121228|2333_1   9 TVSDKPTAIVIGAGPAGLSVSLGLAHRGWKVILVEKYE 46 
                 4578888889************************9976 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.8e-06   0.00025     381     413 ..      15      47 ..       3      75 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.8e-06
   TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtllereee 413
                 + +v+G+GPaGl+ +   a+rG +v+l+e+ e+
  MMETSP1061-20121228|2333_1  15 TAIVIGAGPAGLSVSLGLAHRGWKVILVEKYES 47 
                 579**************************9765 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.2     4e-06   0.00055       2      42 ..      17      57 ..      16      75 .. 0.87
   2 ?   -2.4   0.0       3.6   4.9e+02     209     259 ..     101     153 ..      89     163 .. 0.71
   3 ?   -2.4   0.0       3.4   4.6e+02     277     325 ..     204     252 ..     196     279 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4e-06
   TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfed 42
                +v+G+G AGL+  + La++G++v l+E  +    R +sf  
  MMETSP1061-20121228|2333_1 17 IVIGAGPAGLSVSLGLAHRGWKVILVEKYESFEVRGASFGM 57
                79*************************98777666666655 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.6
   TIGR03467 209 lfvepaarylesrggevrlgtrvreleasag.giralve.aaeetlaadavvl 259
                  + e ++++++++ +++++g++++ +  +++ ++ ++++ +++et + d  + 
  MMETSP1061-20121228|2333_1 101 ALLERVRKMVAANVVDLKMGLSIEDILDEGDsRNGVTARfTNGETIEGDVLIG 153
                 56677889999999999999999998665431444555556888877776665 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 3.4
   TIGR03467 277 aklaalesspIttvhlrldrevklpaplvglvgglaqWlfdrgelagee 325
                  +l++l ++ It ++  ++  v +   ++    g + W+++ + ++ ++
  MMETSP1061-20121228|2333_1 204 SRLQHLVHKGITPLYATYPGMVFFVISFHSQTPGRMCWVCATTDKNFDT 252
                 5678888999999999999999999999999999999999887666555 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2     4e-06   0.00055       2      33 ..      17      48 ..      16      69 .. 0.88
   2 ?   -2.7   0.0       3.2   4.3e+02     114     160 ..     108     158 ..     100     165 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4e-06
   TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEknkki 33
                i+iG+G+aGl  ++ +a++g kV+l+Ek +++
  MMETSP1061-20121228|2333_1 17 IVIGAGPAGLSVSLGLAHRGWKVILVEKYESF 48
                9***************************8876 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 3.2
   TIGR00275 114 kelkelgvevlteskvksi.kkeeekfevet...ekkeleakkvilatGgk 160
                 k ++ + v++++  ++++i ++ +++ +v++   +++++e + +i a G  
  MMETSP1061-20121228|2333_1 108 KMVAANVVDLKMGLSIEDIlDEGDSRNGVTArftNGETIEGDVLIGADGVH 158
                 556666788888888888887777776666555678888888888777765 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.3   2.1e-05    0.0029       2      31 ..      17      46 ..      16      58 .. 0.85
   2 ?    0.7   0.0      0.36        49     151     210 ..     107     162 ..      88     190 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.1e-05
   TIGR02352  2 lviGgGviGlsvAveLakrghkvtllekde 31
                +viG+G  Glsv + La+rg+kv l+ek e
  MMETSP1061-20121228|2333_1 17 IVIGAGPAGLSVSLGLAHRGWKVILVEKYE 46
                8**************************973 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.36
   TIGR02352 151 rellkaLvkaleklGveiieevevqeieargekvtavktssekvqadqvvlaaGawakel 210
                 r++++a v +l k+G +i++     +   + + vta  t+ e+++ d ++ a G+ ++  
  MMETSP1061-20121228|2333_1 107 RKMVAANVVDL-KMGLSIED---ILDEGDSRNGVTARFTNGETIEGDVLIGADGVHSSVR 162
                 66777777777.77888888...4444455556999999***************988633 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     5e-06   0.00069      24      56 ..      16      48 ..       5      80 .. 0.84
   2 ?   -2.6   0.0       4.1   5.7e+02     113     146 ..     112     147 ..      96     157 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5e-06
   TIGR00292 24 viivGaGpsGLtaayylakeglkvvvlerklai 56
                 i++GaGp+GL+ +  la++g kv+++e+  ++
  MMETSP1061-20121228|2333_1 16 AIVIGAGPAGLSVSLGLAHRGWKVILVEKYESF 48
                5899************************97665 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 4.1
   TIGR00292 113 ag.vkilnavsveDlilrddt.vgvaGvvinwsaie 146
                 a  v +  ++s+eD++   d+  gv+   +n  +ie
  MMETSP1061-20121228|2333_1 112 ANvVDLKMGLSIEDILDEGDSrNGVTARFTNGETIE 147
                 333566678899998877665456666556655555 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.7e-06   0.00064     130     163 ..      10      43 ..       2      62 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.7e-06
   TIGR01316 130 pstkkkvaviGaGpaGlavaselakkGhevtvfe 163
                  s k    viGaGpaGl+v+  la++G++v + e
  MMETSP1061-20121228|2333_1  10 VSDKPTAIVIGAGPAGLSVSLGLAHRGWKVILVE 43 
                 455666789********************98866 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.3e-05    0.0018       4      33 ..      16      45 ..      14      52 .. 0.92
   2 ?   -2.4   0.0       2.3   3.2e+02     215     272 ..     104     162 ..      96     171 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.3e-05
   TIGR01350  4 vvviGgGpgGYvaAiraaqlglkvalveke 33
                 +viG+Gp+G   +   a+ g kv+lvek 
  MMETSP1061-20121228|2333_1 16 AIVIGAGPAGLSVSLGLAHRGWKVILVEKY 45
                59**************************94 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.3
   TIGR01350 215 kvlkkklkkkgvkiltnakvtevekeedevv.veakkkevetleaekvLvavGrkpnle 272
                 + ++k++ ++ v+++++ +++ + +e d+   v+a+ ++ et+e++ ++ a G++++++
  MMETSP1061-20121228|2333_1 104 ERVRKMVAANVVDLKMGLSIEDILDEGDSRNgVTARFTNGETIEGDVLIGADGVHSSVR 162
                 56778888888899999999977776666555554555558999999888888887776 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.1e-05    0.0015       2      31 ..      16      45 ..      15      66 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.1e-05
   TIGR01790  2 liviGgGlAglaiAlelakpglrvqlieaa 31
                +iviG+G+Agl ++l la++g +v l+e  
  MMETSP1061-20121228|2333_1 16 AIVIGAGPAGLSVSLGLAHRGWKVILVEKY 45
                59************************9965 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.2e-05    0.0017     172     202 ..      17      47 ..       8      63 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.2e-05
   TIGR01372 172 LvvGaGpaGLaaAraAaraGarvilvdeqae 202
                 +v+GaGpaGL+  +  a+ G +vilv++ ++
  MMETSP1061-20121228|2333_1  17 IVIGAGPAGLSVSLGLAHRGWKVILVEKYES 47 
                 79************************98665 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.6e-05    0.0036       3      34 ..      17      47 ..      15      59 .. 0.93
   2 ?   -2.7   0.0       2.8   3.8e+02      65     103 ..     335     374 ..     324     398 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.6e-05
   TIGR01813  3 vvvGsGlAGlsaaleakkaglaevvvleKapv 34
                +v+G+G AGls +l + ++g  +v+++eK ++
  MMETSP1061-20121228|2333_1 17 IVIGAGPAGLSVSLGLAHRG-WKVILVEKYES 47
                9*******************.9*******986 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.8
   TIGR01813  65 lfikdtlkggrgindpelvkklaeesadavdwlkd.evkl 103
                 + ++d++   r  + +el+  + +es++++  ++d   k+
  MMETSP1061-20121228|2333_1 335 MAFEDAIVLCRLLGSEELCSSILDESSSGASAIEDiLGKF 374
                 5678888888999999999999999999888888744444 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.9e-05    0.0026     371     428 ..      12      67 ..       3      80 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.9e-05
   TIGR03996 371 tpgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargdGlsrlaalad 428
                    +++v+G GpaGl  +  la rG +v l+e+   +   vr a+ g G++ ++al +
  MMETSP1061-20121228|2333_1  12 DKPTAIVIGAGPAGLSVSLGLAHRGWKVILVEKYESF--EVRGASFGMGRNGIKALEE 67 
                 445689***************************9988..5999999999999999876 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     2e-05    0.0027       2      30 ..      16      44 ..      15      49 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2e-05
   TIGR04018  2 viiiGaGPiGlaaaieakkaglsyliiek 30
                +i+iGaGP Gl++++ + ++g +++++ek
  MMETSP1061-20121228|2333_1 16 AIVIGAGPAGLSVSLGLAHRGWKVILVEK 44
                69**************************9 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   2.4e-05    0.0032       3      39 ..      16      54 ..      14      59 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.4e-05
   TIGR03364  3 vvvvGaGivGlahAlaaarrGlkVtvierss..raaGAs 39
                 +v+GaG  Gl+ +l  a+rG+kV+++e+ +  +++GAs
  MMETSP1061-20121228|2333_1 16 AIVIGAGPAGLSVSLGLAHRGWKVILVEKYEsfEVRGAS 54
                69**************************96622567776 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0047      0.65       4      32 ..      17      45 ..      15      57 .. 0.91
   2 !    5.5   0.0    0.0096       1.3     142     167 ..     141     166 ..      98     179 .. 0.85
   3 ?   -0.2   0.0      0.52        72     271     301 ..     314     344 ..     308     378 .. 0.76
   4 ?   -0.7   0.0      0.72        99     227     253 ..     378     404 ..     370     408 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0047
   TIGR02028  4 avvgggpagasaaetlakagiqtfllerk 32
                 v+g gpag s +  la+ g + +l+e+ 
  MMETSP1061-20121228|2333_1 17 IVIGAGPAGLSVSLGLAHRGWKVILVEKY 45
                599***********************985 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0096
   TIGR02028 142 gtkktlevdavigadgansrvakeid 167
                 +  +t+e d++igadg  s v k ++
  MMETSP1061-20121228|2333_1 141 TNGETIEGDVLIGADGVHSSVRKILG 166
                 45579**************9988765 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.52
   TIGR02028 271 rvalvgdaagyvtkssgegiyfaaksgrlca 301
                  v+l+gdaa  +  + g+g  +a   + + +
  MMETSP1061-20121228|2333_1 314 NVTLIGDAAHAMRATDGQGGNMAFEDAIVLC 344
                 699********99999999888876665443 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 0.72
   TIGR02028 227 akdeikklqagiraraaakvaggkiir 253
                 + +++kk+  + r ra+a++ g +++ 
  MMETSP1061-20121228|2333_1 378 RMPRVKKVHDSQRLRAEARLRGERMVG 404
                 66899*****************99985 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00011     0.015       3      33 ..      16      46 ..      14      53 .. 0.91
   2 ?   -3.7   0.0       6.5   8.9e+02     137     167 ..     176     206 ..     171     212 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
   TIGR01292  3 viiiGaGpaGltaaiYaaranlktlliegke 33
                 i+iGaGpaGl+ ++  a  ++k++l+e+ e
  MMETSP1061-20121228|2333_1 16 AIVIGAGPAGLSVSLGLAHRGWKVILVEKYE 46
                59*************************9865 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 6.5
   TIGR01292 137 alfknkevavvGggdsAveealyLskiakkV 167
                 ++f++  ++ + g+d+ ve +  Ls+ +++ 
  MMETSP1061-20121228|2333_1 176 KIFRGTVLVNLDGNDESVEGTENLSSESSRL 206
                 5788888888888888888888888766654 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     7e-05    0.0096       4      44 ..      16      49 ..      13      98 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7e-05
   TIGR02733  4 vvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfk 44
                 +viGaG aGl  +  la+rG++v l+e+ +        f 
  MMETSP1061-20121228|2333_1 16 AIVIGAGPAGLSVSLGLAHRGWKVILVEKYES-------FE 49
                69**************************8753.......44 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018     0.025       3      32 ..      16      45 ..      14      52 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00018
   TIGR04046  3 vviiGaGqaGlsvsyllkkkgvdhvvlekk 32
                +++iGaG aGlsvs  l ++g + +++ek 
  MMETSP1061-20121228|2333_1 16 AIVIGAGPAGLSVSLGLAHRGWKVILVEKY 45
                69***********************99986 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.023       3.1     151     182 ..      15      46 ..       6      52 .. 0.88
   2 ?    4.5   0.0     0.019       2.6     190     247 ..     103     161 ..      90     177 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.023
   TIGR03385 151 kvvviGgGyiglemvealkergkevtlierse 182
                 +++viG+G  gl +   l +rg +v l+e+ e
  MMETSP1061-20121228|2333_1  15 TAIVIGAGPAGLSVSLGLAHRGWKVILVEKYE 46 
                 5799************************9865 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.019
   TIGR03385 190 Deeiakiveeelekkeielrlneevksvegeekve.vltsgkvyqaDlvilavGvkPns 247
                  e + k+v  ++ + ++ l +++ +++ + ++ v  ++t+g++++ D++i a Gv+  +
  MMETSP1061-20121228|2333_1 103 LERVRKMVAANVVDLKMGLSIEDILDEGDSRNGVTaRFTNGETIEGDVLIGADGVHSSV 161
                 455666677777666777888888888777777777*******************9766 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00038     0.052       3      31 ..      16      44 ..      15      48 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00038
   TIGR03378  3 viiiGgGlaGlscalrlaeaGkktaiiaa 31
                 i+iG+G aGls +l la++G k++++ +
  MMETSP1061-20121228|2333_1 16 AIVIGAGPAGLSVSLGLAHRGWKVILVEK 44
                59***********************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      191  (0.0465627); expected 82.0 (0.02)
Passed Vit filter:                        63  (0.0153584); expected 4.1 (0.001)
Passed Fwd filter:                        30  (0.00731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              30  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 982.85
//
Query:       MMETSP1061-20121228|2340_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.10s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 2215.12
//
Query:       MMETSP1061-20121228|2341_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-77  257.1   0.0    6.1e-76  253.9   0.0    2.3  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
    4.7e-08   30.4   0.1    1.7e-07   28.5   0.0    1.8  2  TIGR01789 lycopene_cycl: lycopene cyclase
    1.2e-07   29.6   1.1     0.0065   14.0   0.4    3.0  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    3.8e-06   24.2   0.1      0.023   11.8   0.0    2.2  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00064   15.4   0.1     0.0011   14.6   0.1    1.3  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0014   15.5   0.2       0.29    7.9   0.0    2.3  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase
  ------ inclusion threshold ------
        0.1    9.2   1.1       0.16    8.5   0.0    1.7  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family


Domain annotation for each model (and alignments):
>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.9   0.0     1e-78   6.1e-76       1     361 [.      77     492 ..      77     497 .. 0.87

  Alignments for each domain:
  == domain 1    score: 253.9 bits;  conditional E-value: 1e-78
   TIGR01790   1 DliviGgGlAglaiAlela.kpglrvqlieaapklpfnntygvweddlsdlg..............ladlvehrWsdayeyrf......deearklkraYgsvdraqlkeellqkleeavlwleakaikveadavslslvecaggqri..............qarlVidargfka...lvqyekaslavgfQaayGvevrlsee.........PhdvssmvlMDyrvdqlk.apelkeyr....ptFlYalplssdrlfiEeTsladkpalerdelkqrllarlaakgvkvkeieeeEqgvlPvnlslpsleqkvvavGaaAglvHPatgYsvaralseApklaaaiaqalalss....elataawkslwreerrrqryfrllglelllaleeeelrrvfqrFfgLpkelierFlaa 361
                 D++v G+G+Ag+aiA  l  + +l+v++ +   ++ +  +ygvw+d+ ++                +  +++++Ws +  y++       ee+++l+r+Y +vdr +lk+ l +++      + + ai v+      slv+ ++g++i              ++++V+d++g++    l    +++  +gfQ ayG  v+++e          P+d + m l Dyr+d+ +  ++    +    ptF+Ya+pl+++++f+EeTsl+++pa+ ++e k r  +rl+++g+ v+++eeeE++++P++++lp  +q+++++G+aA +vHP+tgY ++ral  A + a++i + lal++     +++ a+++lw++   rqr f  +g e l++ +   lr +f+ Ff+Lp el+ +Fla+
  MMETSP1061-20121228|2341_1  77 DVLVLGSGPAGCAIASVLGsNGNLDVVVANKDFDADWVPNYGVWKDEWKTILdryesfgidlndgeVDGVIDKEWSVTDCYFGgsynipTEERMRLDRPYCRVDRFALKKSLTKNFRVVEANHISEAIGVNMYRPTGSLVHDEDGTTIklqpkdadappltmRTKIVVDTTGHETkltLKDSIEPHTPPGFQIAYGALVEVDESkspnlsmigPYDKEAMTLFDYRTDHFDgDESATI-KatkaPTFMYAMPLEGNKVFFEETSLVARPAVSFQECKDRCFRRLKHLGIDVANVEEEEYCYIPMGGALPARNQRILGFGGAAAMVHPSTGYHLCRALMGATDAAKVIQEELALEKpnldRAVASAYNALWSTGNIRQRNFATFGGEFLMKQDVVGLRGFFDGFFKLPLELWGGFLAG 492
                 9*****************97889*******999**************9987668889999999999999******9666665422222246899*********************99777778888999988888888898888887633333222222222689*********974222334568889************9845555566669***************985433322.12446***************************************************************************************************************999889999***************************************************85 PP

>> TIGR01789  lycopene_cycl: lycopene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.39   2.3e+02       1      19 [.      77      95 ..      77     106 .. 0.83
   2 !   28.5   0.0     3e-10   1.7e-07     170     305 ..     312     446 ..     310     466 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.39
   TIGR01789  1 dvivvGgGlagglialrlq 19
                dv+v+G+G ag+ ia  l 
  MMETSP1061-20121228|2341_1 77 DVLVLGSGPAGCAIASVLG 95
                899***********98775 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 3e-10
   TIGR01789 170 atvdqsdgyrfvyvlPldaqelliedtyyaddaeleeealrqriadyaaakgwqlatlvreeqGvlPvllaGdssalvdkvdivaiaGlraglvhPttgyslpvave....vadalaardalssedlreaidsfarerwr 305
                 at++ +++  f+y++Pl+ ++++ e+t  +  + +  +  ++r  +  +  g ++a++  ee   +P+  +G   a   +++i+     +a +vhP tgy l+ a+      a+ + ++ al   +l +a+ s  +  w+
  MMETSP1061-20121228|2341_1 312 ATIKATKAPTFMYAMPLEGNKVFFEETSLVARPAVSFQECKDRCFRRLKHLGIDVANVEEEEYCYIPM--GGALPAR--NQRILGFG-GAAAMVHPSTGYHLCRALMgatdAAKVIQEELALEKPNLDRAVASAYNALWS 446
                 8899999999***********************************************99999998885..7766664..45556655.56779**********9875111155566677788888888888887777776 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.4   1.1e-05    0.0065       2      28 ..      77     104 ..      76     112 .. 0.83
   2 ?    0.5   0.0      0.15        87     135     175 ..     237     278 ..     207     293 .. 0.78
   3 !   11.5   0.0   6.5e-05     0.038     244     297 .]     370     422 ..     340     422 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
   TIGR02032   2 DvvvvGaGpaGssaAlrlakkG.lrVll 28 
                 Dv+v G GpaG+++A  l ++G l+V++
  MMETSP1061-20121228|2341_1  77 DVLVLGSGPAGCAIASVLGSNGnLDVVV 104
                 ******************9998456665 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.15
   TIGR02032 135 evtakivigAdGakskvakklglk.kekrelavalraeveee 175
                 +++ kiv++ +G ++k+  k +++ + +  + +a+ a ve++
  MMETSP1061-20121228|2341_1 237 TMRTKIVVDTTGHETKLTLKDSIEpHTPPGFQIAYGALVEVD 278
                 7889*************9999966567777777777777766 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 6.5e-05
   TIGR02032 244 vevkgaliPirradektvtgnvllvGDAAglVkPltGeGIayamvagklAaevv 297
                  e+++  iP++  + ++ ++++l  G AA++V P tG  +  a+++++ Aa+v+
  MMETSP1061-20121228|2341_1 370 EEEEYCYIPMG-GALPARNQRILGFGGAAAMVHPSTGYHLCRALMGATDAAKVI 422
                 34455569**9.566777788******************************987 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00013     0.073      12      52 ..      68     107 ..      59     120 .. 0.85
   2 !   11.8   0.0   3.9e-05     0.023     151     172 ..     230     253 ..     210     257 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00013
   TIGR00292  12 yfedlldyaesDviivGaGpsGLtaayylakeg.lkvvvler 52 
                 + ++++d    Dv++ G+Gp+G + a +l  +g l vvv ++
  MMETSP1061-20121228|2341_1  68 SNDEWDD--SCDVLVLGSGPAGCAIASVLGSNGnLDVVVANK 107
                 5567776..47*********************9999999765 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 3.9e-05
   TIGR00292 151 kvD..pLtlrsrvvvdatGhdaei 172
                   D  pLt+r+++vvd+tGh++++
  MMETSP1061-20121228|2341_1 230 DADapPLTMRTKIVVDTTGHETKL 253
                 455669***************976 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.9e-06    0.0011     162     200 ..      69     108 ..      58     112 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.9e-06
   TIGR01372 162 ydkvnahcDvLvvGaGpaGLaaAraAaraG.arvilvdeq 200
                  d+    cDvLv+G+GpaG a A   +++G + v++++++
  MMETSP1061-20121228|2341_1  69 NDEWDDSCDVLVLGSGPAGCAIASVLGSNGnLDVVVANKD 108
                 5666778****************99988883567777665 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0031       1.8       2      29 ..      77     105 ..      76     111 .. 0.78
   2 !    7.9   0.0    0.0005      0.29     235     304 ..     359     428 ..     345     450 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0031
   TIGR02023   2 dvlviGggpsGaaaaetLakagi.evill 29 
                 dvlv+G+gp+G a a  L ++g  +v++ 
  MMETSP1061-20121228|2341_1  77 DVLVLGSGPAGCAIASVLGSNGNlDVVVA 105
                 8*****************98875144444 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0005
   TIGR02023 235 rrkaglaggktirreaapiPlkPrkrldservvLvGDaaGlvakasGeGiyyamksGklaaeaivealks 304
                  +++g++ +++  +e   iP+       ++r++  G aa +v +++G  +  a+ +   aa+ i e l  
  MMETSP1061-20121228|2341_1 359 LKHLGIDVANVEEEEYCYIPMGGALPARNQRILGFGGAAAMVHPSTGYHLCRALMGATDAAKVIQEELAL 428
                 45677899999999999******999**************************************999873 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   0.00028      0.16       1      31 [.      77     107 ..      77     121 .. 0.88
   2 ?   -2.0   0.1      0.44   2.6e+02     278     315 ..     388     425 ..     381     444 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00028
   TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalvea 31 
                 d+++ G+G++G a+A  L s+++l+v + ++
  MMETSP1061-20121228|2341_1  77 DVLVLGSGPAGCAIASVLGSNGNLDVVVANK 107
                 89*******************9999887655 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.44
   TIGR01988 278 ervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaea 315
                 +r+   G AA  vhP +G  l   l+ +   a+v++e+
  MMETSP1061-20121228|2341_1 388 QRILGFGGAAAMVHPSTGYHLCRALMGATDAAKVIQEE 425
                 67888899*******99987776666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.41
# Mc/sec: 1963.74
//
Query:       MMETSP1061-20121228|2347_1  [L=1571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.12s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 3344.43
//
Query:       MMETSP1061-20121228|2351_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|2349_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-15   53.7   0.0    6.1e-15   53.2   0.0    1.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0002   18.3   0.0      0.089    9.6   0.0    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00088   16.5   0.0     0.0043   14.3   0.0    1.9  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0051   13.6   0.1     0.0067   13.2   0.1    1.1  1  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
     0.0076   13.0   0.0       0.16    8.7   0.0    2.1  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
  ------ inclusion threshold ------
      0.031   11.2   0.0        0.1    9.6   0.0    1.7  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0     9e-18   6.1e-15       2     132 ..      15     160 ..      14     183 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 9e-18
   TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt.....................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkv 132
                 kei+i+++G +++GK+t+  +l ++   i+e++p+ ++++ t                              yk+ l+D++Gq   +a +r y++++++++ vvd   + l+++ +  ++   + ++ + +g+ +++++nK Dl+++l+++ 
  MMETSP1061-20121228|2349_1  15 KEIRILVLGLDNAGKTTIVRRLCDRP--IDEIEPTLGFSIQTLDYDLA--DdsidereegdddghessssssYKLHLWDIGGQSTIRAYWRNYFEKTDGIVWVVDSGDR-LRLDLVR-EELARVLRQERLAGASLLIMANKSDLEGALSKEA 160
                 89**********************99..99999977666666433322..222448888899***********************************************.9999999.555555555555****************777665 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00013     0.089     170     197 ..      11      38 ..       4      56 .. 0.83
   2 !    6.9   0.0   0.00086      0.59      68     126 ..      95     158 ..      87     194 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00013
   TIGR03594 170 eeeeepikiaiiGrpNvGKStLvNallg 197
                 +eee++i+i ++G  N+GK t+v +l++
  MMETSP1061-20121228|2349_1  11 KEEEKEIRILVLGLDNAGKTTIVRRLCD 38 
                 233567*****************99975 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00086
   TIGR03594  68 eireqaelaieeadvilfvvdare..glteeDeeiaklLrksk...kpvilvvNKvdnkkeeae 126
                 +ir+  +   e+ d i++vvd  +  +l+   ee+a++Lr+++     +++++NK+d + + ++
  MMETSP1061-20121228|2349_1  95 TIRAYWRNYFEKTDGIVWVVDSGDrlRLDLVREELARVLRQERlagASLLIMANKSDLEGALSK 158
                 6667777788999********977124556689******998776689999****998755444 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.3e-06    0.0043     115     144 ..      13      42 ..       4      54 .. 0.84
   2 ?   -0.2   0.0      0.17   1.1e+02      66     104 ..      97     135 ..      89     166 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.3e-06
   TIGR03596 115 kkkairalvvGiPNvGKStliNrlakkkva 144
                 ++k+ir+lv+G+ N GK t++ rl+ + + 
  MMETSP1061-20121228|2349_1  13 EEKEIRILVLGLDNAGKTTIVRRLCDRPID 42 
                 5789********************998765 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.17
   TIGR03596  66 tkkwlkyfeekgkkalavnakkkkkvkkilkaikkllke 104
                  + w +yfe+++  +++v++ ++ ++  + +++ ++l++
  MMETSP1061-20121228|2349_1  97 RAYWRNYFEKTDGIVWVVDSGDRLRLDLVREELARVLRQ 135
                 567888888888788888877777766666666665554 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   9.7e-06    0.0067     183     252 ..      94     162 ..      90     193 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.7e-06
   TIGR01208 183 kelkPswrgeleitdaiqkliekgykvelakvkGWWkdtGkkedlleanrlildevekevkGvkekskie 252
                 ++++  wr+ +e td+i ++++ g++++l  v+     + ++e l  a  li +  +++++G  +k  i 
  MMETSP1061-20121228|2349_1  94 STIRAYWRNYFEKTDGIVWVVDSGDRLRLDLVREELARVLRQERLAGASLLI-MANKSDLEGALSKEAIA 162
                 578899****************************999999999987776555.56688899966655554 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00023      0.16     182     212 ..       9      39 ..       5      60 .. 0.84
   2 ?    2.5   0.0     0.018        12     268     315 ..     106     154 ..     101     208 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00023
   TIGR03156 182 kkrkksevptvalvGYTNaGKstllnaltka 212
                 k +++++ +++ + G  NaGK+t++++l++ 
  MMETSP1061-20121228|2349_1   9 KVKEEEKEIRILVLGLDNAGKTTIVRRLCDR 39 
                 5677788889999***************986 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.018
   TIGR03156 268 eadlllhvvDasdeeaeeqi.eaveevLeelgaeeipvllvlNkidkle 315
                 ++d ++ vvD+ d+ + + + e+ ++vL++  ++ +  l++ Nk d+  
  MMETSP1061-20121228|2349_1 106 KTDGIVWVVDSGDRLRLDLVrEELARVLRQERLAGASLLIMANKSDLEG 154
                 6788999****99988876526799********************9865 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00015       0.1     143     178 ..       4      39 ..       1      57 [. 0.86
   2 ?   -0.7   0.0       0.2   1.4e+02      60     103 ..     102     152 ..      93     201 .. 0.66

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00015
   TIGR03597 143 kellelikkarekkdvyvvGvtNVGKSsliNkllkl 178
                  ++l+++k+++++  ++v+G  N GK +++ +l++ 
  MMETSP1061-20121228|2349_1   4 LTILKKVKEEEKEIRILVLGLDNAGKTTIVRRLCDR 39 
                 578899999999999*****************9964 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.2
   TIGR03597  60 slsekkalvvavvD.....ifdlegslikelkrfvke.....nkvllvvNKidl 103
                 ++ ek+  +v+vvD      +dl     +el+r++++      ++l+++NK dl
  MMETSP1061-20121228|2349_1 102 NYFEKTDGIVWVVDsgdrlRLDLV---REELARVLRQerlagASLLIMANKSDL 152
                 556677778888885554434443...444444444400010556778888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 878.55
//
Query:       MMETSP1061-20121228|2355_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 448.76
//
Query:       MMETSP1061-20121228|2358_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 296.98
//
Query:       MMETSP1061-20121228|2361_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-11   39.5   0.8    4.6e-11   39.3   0.6    1.0  1  TIGR00834 ae: anion exchange protein


Domain annotation for each model (and alignments):
>> TIGR00834  ae: anion exchange protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.6   1.1e-14   4.6e-11     621     712 ..      13      99 ..       4     100 .. 0.92

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 1.1e-14
   TIGR00834 621 kLsvPsglkvtspeargWfipPlgekkpfpvWmmlaaalPalLvliLiflesqittlivskkerklkkGsGfhLDLllvvalgglaallglP 712
                  ++vP + ++t++  r W+++Pl          ++ a+ Pal+ ++L f+++ i +++ + ++ +l+k   +h D+++++  ++ +++lglP
  MMETSP1061-20121228|2361_1  13 HVVVPWDWQPTAD--RPWVVNPLAGI---TLKGIFGALFPALMLYLLFFIDHNISSILTQSPKYNLTKPPAYHWDFFVLGLTIIPCGILGLP 99 
                 5689999999975..6*******998...6778999*******************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 666.54
//
Query:       MMETSP1061-20121228|2359_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-96  320.6   3.1    2.1e-96  320.4   2.2    1.0  1  TIGR00116 tsf: translation elongation factor Ts


Domain annotation for each model (and alignments):
>> TIGR00116  tsf: translation elongation factor Ts
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.4   2.2  5.1e-100   2.1e-96       1     290 [.      36     324 ..      36     327 .. 0.96

  Alignments for each domain:
  == domain 1    score: 320.4 bits;  conditional E-value: 5.1e-100
   TIGR00116   1 msaisaqlvkeLRektdAgmmdCkkALveangDlekAidllRekGiakaakkadrvAaeGvvllkvdnd.kavlveinsetDFvAknegfkelanklle.elkankittveelkkselenkeveeklaslvakigEnilvrriavleaksseviksYlHanariGvlveikgkseeelakdlAmHvAAvkPqfldqddvsaevvkkereiekdqaelegkPekilekiveGrlkkflaeisLleqkfvmddkktvkqllkeknakvtefvrfevGeGiekkaedfaeevaaq 290
                 m +++++ +k LR+ t+AgmmdCkkAL+e++gD e A ++lR+kG+a+a kka rvAaeG +++ + +d +av+ve+n+etDFv k+  f  + n+++  ++   + ++ve l+k e++ +++e+  ++lv+kigEni+vrr+    +  s v+ +Y+H+   iGvlve++g   eel  d+AmHv A++P f   ddv ++v+++e+ i ++qa ++gkPe+i+ek+veGr++kfl+e +L+ q+fv+d + tv+qll++++ak++ f r+ vGeGiekk  dfa+eva +
  MMETSP1061-20121228|2359_1  36 MGEVTPKTIKALRDLTGAGMMDCKKALTESEGDQEAAAEFLRKKGLAQADKKASRVAAEGKIAVGTGSDgTAVMVEVNCETDFVGKDSTFLSYCNRVAGaAASMGEGKSVEDLMKEEVDGESLEDTRQALVSKIGENIQVRRMESRGNG-STVVGGYVHM-GTIGVLVELEG-GSEELCTDIAMHVTAMNPPFATADDVPSDVLENEKRILTEQALESGKPEAIVEKMVEGRIRKFLEEKCLVSQSFVKDGDMTVQQLLDKNDAKMVGFSRLVVGEGIEKKVDDFAAEVASM 324
                 67899***********************************************************999888****************************9566778899**********************************9876666.66*******5.67*********.7889****************************************************************************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 1170.07
//
Query:       MMETSP1061-20121228|2352_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1546.16
//
Query:       MMETSP1061-20121228|2369_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 814.89
//
Query:       MMETSP1061-20121228|2365_1  [L=1076]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1073.1   0.0          0 1072.8   0.0    1.0  1  TIGR02414 pepN_proteo: aminopeptidase N
    4.4e-36  122.4   0.0    6.5e-36  121.8   0.0    1.1  1  TIGR02412 pepN_strep_liv: aminopeptidase N
    2.9e-23   80.3   0.7    3.9e-23   79.8   0.1    1.4  2  TIGR02411 leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase


Domain annotation for each model (and alignments):
>> TIGR02414  pepN_proteo: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1072.8   0.0         0         0       1     867 [.     191    1073 ..     191    1074 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1072.8 bits;  conditional E-value: 0
   TIGR02414    1 DYkppefliekvkLefdleeeetlvraklkverkke......eeakae.lvldGee..lkllsikldgkklaed.eyqlddesLtiasvpeekftleieteikPeentsLeGLYksgglfctqCEaeGFRrityflDRPdvlskyt.vtieAdkkkypvlLsnGnkieseeledg.rhlaeweDPfkkPsYLFAlvAGdlkvledkfitk.sgrevalevyveekkedkaefalesLkkamkwDEevfglEyDLdifmivAvddFnmGAmEnkgLniFnsklvLAdpetatDadyeriesviaHEYFHnwtGnRvtcRDWFqlslkEGltvfRdqefsadmtsravkRiedvkllravqFaEDagplaHPvrPesyveinnfytatvYekGaEviRmlktllGeeafrkgmdlYfkrhDGqavtvedfvaaledas.gkdleqfkrWysqaGtPelevkeeydaekkeytltlkqstpptpgqkekkplhiPlavglldaegkklelslegeareteevlelkeaeetfvfegikekpvpsllrgFsAPvkl....eyelseedlllLlkkdsdafaRweaaqklarkellklvaeaqkgeelkveekliealkklled..ealdaafkalllalPseaelaelv...ekvdpealaaareflrkeiaeqladelaklykelqeeeees...veaaaagrRalrnlalsylaka.....edaeilelaleqfkeadnmtdalaalsvlvkaeskere.kkealaefyekwkddplvldkwfavqatstskdvleevkkllkhpafdlknPnkvraligaFananlvrfhdasgkgYrfladkilkidklnPqvaarllealkrwrkleekrqelmkaeleriaaeeelskdvkevvska 867 
                  DYkp + +++k++++fd+++ +t+v+++l+++++++      + ++a+ lvldG+e  ++ll+++ldgk l e+ +y+l + ++ +++ p    +l+++++i Peent+L+GLY+sg ++ctqCEa GFRrity++DRPd ++ ++ +++eAdk++ypvlL+nGn +e++  e+  rh+a w DP++kPsYLF  vAG+l ++ d+++t+   r+v+l++y+++k+++k+++a+esLk++mkwDE+++glEyDLd ++ivAvd FnmGAmEnkgLn+Fn+++vLAdp+tatD+dyer+e+vi+HEYFHnwtGnRvtcRDWFql+lkEGltvfRdqefs dm+s+avkRie v  lra+qFa Dagp+ HP+rPesy++++nfytatvY+kGaEviRm++tllG ++frkgmdlYf+rhDG+avt++df aa++da+ g dleqf+rWys  GtP ++ +++yda++k+++ltl+qst++t       plhiP+++glld+ + ++ +         ++vl l+e++++f+fe+++  + ps+lr+FsAP+kl    +++++e+ l++L++ d+d f++we++q l++  + ++++ a + e++++ + ++ea++++led  +++d+++ a++l+lP e +l+e+v   + vdp a+++ar ++++++a+++a+el++ y++l e ++     v+a+++g+R+lrn +l+yl +      e+ ++ +la++++++a+ mtd++aal++l+ ++ +++e + +++++fy++ + d+lvldkwfa+qa ++ +d le+ k+l +hp+f+lknPn+ r+l+g F+ an++ fhdasg+gYrf+ + + ++d+lnPq++ rl ++l +w+k++e+r ++mkael+++++ + +s d+ e+v++ 
  MMETSP1061-20121228|2365_1  191 DYKPLDLVVSKISMDFDIRDGKTTVKSQLTIDKNPKldgdewNPDDAHdLVLDGDEtcVTLLEVALDGKVLVEGeDYVLSPGKMVVKNPPPG-SVLSTTVTIVPEENTQLSGLYQSGPMYCTQCEAMGFRRITYYPDRPDNMAVFEsIRLEADKEQYPVLLANGNLVEEGAGEESdRHYAVWTDPYPKPSYLFCCVAGNLGKITDSYVTQpGQRSVELNIYSDPKDAHKLQYAMESLKNSMKWDEDKYGLEYDLDLYNIVAVDSFNMGAMENKGLNVFNTAYVLADPSTATDTDYERVEGVIGHEYFHNWTGNRVTCRDWFQLTLKEGLTVFRDQEFSGDMNSKAVKRIEAVVSLRASQFAQDAGPMKHPIRPESYISMDNFYTATVYNKGAEVIRMYQTLLGVDGFRKGMDLYFERHDGDAVTCDDFLAAMQDANdGADLEQFARWYSTPGTPLVTYEHSYDADTKTFSLTLTQSTQSTV-----GPLHIPISLGLLDKATGEEVVP--------TTVLGLREESQVFTFENLDGDVFPSMLRQFSAPIKLipanDAPVDEDLLAFLAARDTDGFNKWESGQALFQGLIFQVLDGA-ELEDTQTWASVVEAFGRTLEDaaTSTDHSISAYALTLPTEGTLQEFVpagKPVDPVAIHEARGAVKQALARKFATELRERYDALTEATAGAefsVDATSIGTRKLRNSCLDYLCSIratedEQVSASDLAKAHYDSATCMTDKVAALNALAGMSGAASEaRDTIVQRFYDEAEGDALVLDKWFAIQAMADLPDSLERAKALKEHPDFSLKNPNRCRSLVGGFC-ANAAGFHDASGAGYRFVREILEELDALNPQISGRLGSTLITWKKYDEERGAKMKAELQKLSEMKPISDDLFEIVQRG 1073
                  9*******************************99862222222334456*****9845689**********99879*************996.9***************************************************6489********************9987644**********************************55699****************************************************************************************************************************************************************************************************************************9789**************************************9985.....5************998766666........89*********************************9544334556666789*************************88877.6677888899*********9976789**************999987644489******************************9988765444449******************864111113345678899********************99877655156789**********************************************************.**************************************************************************985 PP

>> TIGR02412  pepN_strep_liv: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   4.7e-39   6.5e-36     122     489 ..     311     693 ..     306     719 .. 0.81

  Alignments for each domain:
  == domain 1    score: 121.8 bits;  conditional E-value: 4.7e-39
   TIGR02412 122 tqfevadarrvfavFdqPDlKAsfe.lsvkaPed.WtV.isnsteee.vtteeadrvwefeetP.klstYltavaaGPyvsvq......keaesiplgiyaRkSlaeyldadaifditrqgldfyeekFgipyPfkkYDqvfvPefnaGAmENaGlVtfaeefvfr..aevtdaeketrakvilHElAHmWFGdlVtmrWWddlWLnEsFAeymgalasaeateytdaWttfavqrKawaYeaDqlpttHPiv.advadledalsnf.DgitYaKGASvLkqLvayvGeeaFlagvnayfkryafgnatLdDlidsLakas.grdlsaWskaWLetaGvdvlkaelevdddkvs.alsvessged....Rphriavglydldr.delrrt 489
                 tq+e+   rr+    d PD  A+fe + + a ++ + V ++n++  e    ee+dr + + + P +  +Yl+   aG   ++        +++s++l iy+    a++l  ++ ++  ++++++ e k+g  y  + Y+ v v  fn+GAmEN Gl  f+  +v    +++td+++e+   vi HE  H W G+ Vt r W +l L+E    +  +  s +  +      + +v+ +a  + +D  p+ HPi+ +        ++nf  +  Y+KGA v++   +++G + F++g++ yf+r+  +  t dD++ ++++a  g dl++++  W  t+G+  ++ e   d+d  + +l++ +s +         i++gl d+ + +e++ t
  MMETSP1061-20121228|2365_1 311 TQCEAMGFRRITYYPDRPDNMAVFEsIRLEADKEqYPVlLANGNLVEeGAGEESDRHYAVWTDPyPKPSYLFCCVAGNLGKITdsyvtqPGQRSVELNIYSDPKDAHKL--QYAMESLKNSMKWDEDKYGLEYDLDLYNIVAVDSFNMGAMENKGLNVFNTAYVLAdpSTATDTDYERVEGVIGHEYFHNWTGNRVTCRDWFQLTLKEGLTVFRDQEFSGDMNSKAVKRIEAVVSLRASQFAQDAGPMKHPIRpESYIS----MDNFyTATVYNKGAEVIRMYQTLLGVDGFRKGMDLYFERHDGDAVTCDDFLAAMQDANdGADLEQFA-RWYSTPGTPLVTYEHSYDADTKTfSLTLTQSTQStvgpLHIPISLGLLDKATgEEVVPT 693
                 788888999998889999999999647788875425562466654442555555665555554423468********99887777777689************999998..5789*************************************************96447889999*****************************************99999999988889999999999*************9333333....344415778**********************************************997368999875.7*************999877544466666555544522333455566666665555555 PP

>> TIGR02411  leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0      0.78   1.1e+03      47      85 ..     188     223 ..     172     227 .. 0.74
   2 !   79.8   0.1   2.8e-26   3.9e-23     122     448 ..     305     646 ..     287     669 .. 0.77

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 0.78
   TIGR02411  47 lvLdtsyleikevtinglkadfeieerkealGsklkisl 85 
                   Ld + l++   ++  + +df i + k ++ s+l+i++
  MMETSP1061-20121228|2365_1 188 FRLDYKPLDL---VVSKISMDFDIRDGKTTVKSQLTIDK 223
                 5566666654...57778899999999999999999975 PP

  == domain 2    score: 79.8 bits;  conditional E-value: 2.8e-26
   TIGR02411 122 kaPylfsqcqaiharsllPcfdtPsvkstyd.akvesp...lavlls.g.lrke.t..skdegkylfkqkvPiPayLvalasGdL....as..apiGprs...svysekvelekcqyefekdtekflkvae.elifpyvWkkydllvlppsfPyGGmenPnl.tfatPtLiag.......drsnvd.viahelahsWsGnLvtnkswehfWLneGftvylerkivGaleGekerhfsaligwneLqesvktlkkdp.eytkLvvdLkdndPddafssvPyekGsnlLfyleqllGGkaefdpflkaylkkfayksldtkqfkdvLyeyfkdkkkvdkldavdWetwlyseGlPpvk 448
                   P   +qc+a+  r +    d P     ++ +++e +   ++vll+ g l +e +  + d    ++  + P P+yL++ ++G+L    +s  ++ G+rs   ++ys++ + +k qy +e  +++ +k  e +  ++y    y++ v ++sf  G men  l  f t  ++a+       d ++v+ vi he  h W+Gn vt + w  + L eG tv+ ++   G ++ +  +  +a++++ + q       +d   + + +   + +  d+ +++  y+kG +++++ ++llG  + f   +  y++++  ++++ ++f  ++ +     +  ++l++  +  w+ ++G P v 
  MMETSP1061-20121228|2365_1 305 SGPMYCTQCEAMGFRRITYYPDRPDNMAVFEsIRLEADkeqYPVLLAnGnLVEEgAgeESDRHYAVWTDPYPKPSYLFCCVAGNLgkitDSyvTQPGQRSvelNIYSDPKDAHKLQYAME-SLKNSMKWDEdKYGLEYDLDLYNI-VAVDSFNMGAMENKGLnVFNTAYVLADpstatdtDYERVEgVIGHEYFHNWTGNRVTCRDWFQLTLKEGLTVFRDQEFSGDMNSKAVKRIEAVVSLRASQF-----AQDAgPMKHPIRPESYISMDNFYTATVYNKGAEVIRMYQTLLG-VDGFRKGMDLYFERHDGDAVTCDDFLAAMQD----ANDGADLEQ--FARWYSTPGTPLVT 646
                 55778899999999999999998865544432444444447999876242344444445556667899***************9944332233678999955569***************.777777776616789*******96.789**********98834778777664222221244455459*********************************************99999998776543.....3333367777888888899*****************9999998.999**********************999865....444556665..57888888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1076 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.61
# Mc/sec: 2328.20
//
Query:       MMETSP1061-20121228|2371_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 1103.29
//
Query:       MMETSP1061-20121228|2366_1  [L=809]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 2372.87
//
Query:       MMETSP1061-20121228|2370_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-128  425.4   4.5   3.9e-127  421.8   3.1    2.1  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
    6.9e-17   59.4   0.1    1.7e-16   58.1   0.0    1.6  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    5.8e-16   56.2   0.0    9.4e-16   55.5   0.0    1.3  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    3.7e-14   50.2   0.2    4.9e-13   46.5   0.0    2.1  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    1.1e-12   45.6   0.3    1.3e-10   38.8   0.0    2.2  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    5.3e-11   40.4   0.0    1.3e-10   39.1   0.0    1.6  1  TIGR00231 small_GTP: small GTP-binding protein domain
    4.1e-10   37.3   0.1    1.2e-09   35.8   0.0    1.7  2  TIGR00436 era: GTP-binding protein Era
      4e-06   24.2   0.4     0.0044   14.2   0.0    2.3  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    5.6e-06   24.0   0.2    5.2e-05   20.8   0.2    2.2  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    3.9e-05   20.8   0.4       0.01   12.9   0.0    2.4  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0005   17.1   0.1     0.0017   15.4   0.0    1.8  2  TIGR00092 TIGR00092: GTP-binding protein YchF
     0.0015   16.6   0.7       0.03   12.4   0.2    2.6  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
  ------ inclusion threshold ------
      0.057    9.9   1.4      0.057    9.9   0.2    1.5  2  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.8   3.1  1.2e-129  3.9e-127      16     351 .]     259     616 ..     249     616 .. 0.93

  Alignments for each domain:
  == domain 1    score: 421.8 bits;  conditional E-value: 1.2e-129
   TIGR03156  16 eesleEleeLaeaagvevvesvtqkrekvdpktligkGkveeiaelveeeeadlvifddeLspaQernlekale..............vkviDRteLiLdIFaqrArtkegklqVelAqlkyllprlvrkgthlsrq..kgGiGtrGpGEtklEtdrRlirerikklkkelekvekqreeqrkkrkksevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeee...evlltDTVGFirkLPheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekk...eeavlvsAkkgegleeLleaieeal 351
                 ees+ E++eL+++ag+++ ++++q++++v+pkt+ig+Gkvee ++l+ee++a +++fd eLsp Q+++lek+++              +k+iDRt LiLdIFaq+Art+egklqV+lA  +y++prl++++thl+rq   gG+G+rGpGE++lE+drRl+r+ri  lk+++++v+kqr+ +r+ rk++ +p ++lvGYTNaGKs++ln+lt+a v+ae +lFATLdpttr++klp e+   e+lltDTVGFi+kLP++Lv+aF+aTLeev+ead+l+hv+D++++++e+q +av++vL+++g++++pv+ vlNkid+l+e+e+e l+ ++   +++v+vsA +geg+e++ ea+eeal
  MMETSP1061-20121228|2370_1 259 EESMIEMRELIRTAGLSLEDEIIQRQKEVNPKTYIGSGKVEEARKLMEEHDACTIVFDAELSPGQQKTLEKIFNrnalqndflgedqeIKIIDRTALILDIFAQHARTREGKLQVDLALHEYRKPRLTKMWTHLERQsgAGGVGLRGPGESQLEIDRRLVRDRIIVLKRKIDDVQKQRTIHRRGRKRTGLPLLSLVGYTNAGKSSVLNSLTRAGVMAESMLFATLDPTTRKVKLPGESthpEFLLTDTVGFIQKLPTNLVAAFRATLEEVEEADVLVHVIDVANPSWEKQERAVRAVLSDMGVADKPVVRVLNKIDLLNEDEAEILQYEAafaDDTVAVSALTGEGMEDFVEAVEEAL 616
                 48999*****************************************************************97542222233333333389***********************************************55579*********************************************************************************************98656699****************************************************************************8888888777656688*******************9875 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   6.4e+02     241     270 ..     291     320 ..     267     327 .. 0.65
   2 !   58.1   0.0   5.3e-19   1.7e-16       2     161 ..     450     617 ..     425     629 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2
   TIGR03594 241 ekveklsvlrtlkaieradvvllvlDateg 270
                 + +    v ++ k +e+ d + +v+Da+ +
  MMETSP1061-20121228|2370_1 291 TYIGSGKVEEARKLMEEHDACTIVFDAELS 320
                 334555677888888888888888888765 PP

  == domain 2    score: 58.1 bits;  conditional E-value: 5.3e-19
   TIGR03594   2 vvaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeae....lkgkefiliDTgGl.eeeedelekeireqaelaieeadvilfvvdare.glteeDeeiaklLrksk...kpvilvvNKvdnkkeeae.aaefyslGlgevlaiSaehgrgikdLldeileelp 161
                  +++vG +N GKS+ +N l++    + e++   T D ++++++      + ef l DT G+ ++  ++l ++  + +   +eeadv++ v+d+ +   +++++++ ++L   +   kpv+ v+NK+d  +e+++ + ++ +   ++ +a+Sa  g+g++d+++++ e+l+
  MMETSP1061-20121228|2370_1 450 LLSLVGYTNAGKSSVLNSLTRAG-VMAESMLFATLDPTTRKVKlpgeSTHPEFLLTDTVGFiQKLPTNLVAA-FRATLEEVEEADVLVHVIDVANpSWEKQERAVRAVLSDMGvadKPVVRVLNKIDLLNEDEAeILQYEAAFADDTVAVSALTGEGMEDFVEAVEEALN 617
                 45678888888888888887643.222333333444444443311004556788888888833334444444.4456667888888888888766345556666666666654555888888888887766555244444444556788888888888888887777664 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0     3e-18   9.4e-16     161     328 ..     452     616 ..     448     617 .. 0.84

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 3e-18
   TIGR02729 161 glvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvvevee...eksfvlaDiPgliegasegagLGl.eFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeelekkvlaisaltkegleellkkllell 328
                 +lvG+ naGkS++l+++++a     +  F+Tl P+   v++     + +f+l D  g+i+   ++        L  +e + vl+h+id+++    +  ++ +++++ L+     +a+kp + vlnkidll+e+e+e l  + ++++ ++++a+salt+eg+e++++++ e+l
  MMETSP1061-20121228|2370_1 452 SLVGYTNAGKSSVLNSLTRAGVMAESMLFATLDPTTRKVKLPGestHPEFLLTDTVGFIQKLPTNLVAAFrATLEEVEEADVLVHVIDVANP---SWEKQERAVRAVLSDMG--VADKPVVRVLNKIDLLNEDEAEIL--QYEAAFADDTVAVSALTGEGMEDFVEAVEEAL 616
                 79************************************99865222678***********98887544431459*****************9...66677777777777655..79**************96666544..456677899****************9998765 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.094        30      69     110 ..     290     329 ..     285     339 .. 0.78
   2 !   46.5   0.0   1.6e-15   4.9e-13      10     176 ..     451     625 ..     444     638 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.094
   TIGR03918  69 egeLGelRvektrevlektdlallvvdaeaeleeleeellee 110
                 ++ +G+ +ve +r+ +e+ d   +v+dae ++   ++++le+
  MMETSP1061-20121228|2370_1 290 KTYIGSGKVEEARKLMEEHDACTIVFDAELSPG--QQKTLEK 329
                 6789999********************996444..4444444 PP

  == domain 2    score: 46.5 bits;  conditional E-value: 1.6e-15
   TIGR03918  10 ialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllp...lGpvvliDTaGldDe..geLGelRvektrevlektdlallvvdaea.eleeleeelleelke...kkipvivvlnkidlkeeeke.keklekkkeeevvlvsakekegieelkealiellpeeaeektl 176
                 ++l+G +NaGKSs++N lt+  v   s +  +T Dp ++++ l         +l+DT G+  +  ++L     + t e +e++d+ + v+d ++ ++e++e+++ + l++    + pv+ vlnkidl +e+++   ++e+++++++v+vsa ++eg+e++ ea+ e+l++  +  +l
  MMETSP1061-20121228|2370_1 451 LSLVGYTNAGKSSVLNSLTRAGVMAES-MLFATLDPTTRKVKLPGestHPEFLLTDTVGFIQKlpTNLV-AAFRATLEEVEEADVLVHVIDVANpSWEKQERAVRAVLSDmgvADKPVVRVLNKIDLLNEDEAeILQYEAAFADDTVAVSALTGEGMEDFVEAVEEALNSLLTAIEL 625
                 689****************99886555.567899********964111345899*****9875223443.34567999************97652567777666555554111678***********999877688899999********************999998776665555 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0     4e-13   1.3e-10     179     333 ..     415     580 ..     407     591 .. 0.72
   2 ?    4.5   0.0      0.01       3.3     133     173 ..     594     635 ..     583     651 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 4e-13
   TIGR00450 179 evslnqklkkiiaelkdllnsr..kkleklkdglk.laivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGi....lvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskp.ltkdd....eliitlkkkkkdlllvlNKiDLaelei 333
                    +++++  ++ +++d+ + r  ++  + ++gl  l++vG tN+GKSS+lN l +    +  ++  +t D    +++l G      + l Dt G  ++  +   +  + +l+ ++ead+++ v+D+ +p ++k++     +++++ +++k+++ vlNKiDL ++++
  MMETSP1061-20121228|2370_1 415 RRLVRDRIIVLKRKIDDVQKQRtiHRRGRKRTGLPlLSLVGYTNAGKSSVLNSLTRAG-VMAESMLFATLDPTTRKVKLPGEsthpEFLLTDTVGFIQKLPTNLVAAFRATLEEVEEADVLVHVIDVANPsWEKQEravrAVLSDMGVADKPVVRVLNKIDLLNEDE 580
                 55667777777777777777632223456677775279**************998764.34445555666666777777775222247799****9888777778899*******************9984455543334579999****************94333 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.01
   TIGR00450 133 dialnkLkGe.lkvkieelrkkllkllaevevniDyeeddde 173
                  +a+ +L Ge ++ ++e++++ l+ ll+++e  i y++ +d 
  MMETSP1061-20121228|2370_1 594 TVAVSALTGEgMEDFVEAVEEALNSLLTAIELVIPYNKGQDL 635
                 58999****87999**********************987664 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   4.2e-13   1.3e-10       7     163 ..     452     613 ..     448     614 .. 0.85

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 4.2e-13
   TIGR00231   7 vivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt..ykvnllDTaGqedfdairrly.vreverslevvdivilvldveegl.ekqtkeiiheakkkgv...piilvvnKiDlkddlktkvkslfaklnaepiielsaetgknidklfklve 163
                  +vG  ++GKs+ lnsl++   +  es  ++t d  t++++  G+    ++ l DT G +++ + +    +r++   +e++d+ ++v+dv ++  ekq++ ++  +  +gv   p++ v+nKiDl +  ++ +    ++  a + + +sa tg+++++ ++ ve
  MMETSP1061-20121228|2370_1 452 SLVGYTNAGKSSVLNSLTRAG-VMAESMLFATLDPTTRKVKLPGESthPEFLLTDTVGFIQKLPTNLVAaFRATLEEVEEADVLVHVIDVANPSwEKQERAVRAVLSDMGVadkPVVRVLNKIDLLN-EDEAEILQYEAAFADDTVAVSALTGEGMEDFVEAVE 613
                 589****************99.7777779***************9866689999****555556655555*********************986467888888888776654449***********9.7777777777777888*************9998887 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0       2.1   6.6e+02      50      79 ..      26      55 ..      19      57 .. 0.80
   2 !   35.8   0.0   3.7e-12   1.2e-09       4     164 ..     452     617 ..     450     624 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 2.1
   TIGR00436 50 iifiDtPGlhekkhklnellvkeirkalse 79
                i ++ t G+he+  ++n+   k +r++ ++
  MMETSP1061-20121228|2370_1 26 IALLKTNGIHEQTNRSNRSKEKMARSSRHQ 55
                567889999999999999999988888665 PP

  == domain 2    score: 35.8 bits;  conditional E-value: 3.7e-12
   TIGR00436   4 ailGrpnvGKSTLlNkllgq....kisivSpkaqTTrn.risgiltegasqiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsde..knkedellleklqkl...kapvvlalnkldnkekdkllelidkeasllefkeiveisalkgenveelkaiveaklr 164
                 +++G +n+GKS +lN+l+ +    ++ +      TTr+ ++ g+ t+++   ++ Dt G+ +k   +  +  ++  + ++e d+++ v+d  +  ++k+++ +   l ++   ++pvv +lnk+d  ++d+ + l   ++  +   ++v +sal+ge +e + ++ve+ l+
  MMETSP1061-20121228|2370_1 452 SLVGYTNAGKSSVLNSLTRAgvmaESMLFATLDPTTRKvKLPGESTHPE--FLLTDTVGFIQKLPTNLVAAFRATLEEVEEADVLVHVIDVANpsWEKQERAVRAVLSDMgvaDKPVVRVLNKIDLLNEDEAEILQ--YEAAFAD-DTVAVSALTGEGMEDFVEAVEEALN 617
                 78***************87522215667777778887537778877765..7899*******9988888999999999***********97642267777777666665422289999999***999887765443..3333333.68******************99986 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0012      0.38     100     143 ..     431     473 ..     412     513 .. 0.73
   2 !   14.2   0.0   1.4e-05    0.0044      11     104 ..     520     618 ..     510     624 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0012
   TIGR03596 100 kllkekkeklkakglkkkairal.vvGiPNvGKStliNrlakkkv 143
                 ++ k+++   +++g k + + +l  vG  N GKS+++N+l++  v
  MMETSP1061-20121228|2370_1 431 DVQKQRT--IHRRGRKRTGLPLLsLVGYTNAGKSSVLNSLTRAGV 473
                 4444444..34666666666544379**************87655 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.4e-05
   TIGR03596  11 akkeikeklklvDvvievlDARiplssknp.eleelvk.....nkprlivlnkaDladpektk..kwlkyfeekgkkalavnakkkkkvkkilkaikkllke 104
                 a +   e+++ +Dv++ v+D   p   k++  ++ +++     +kp + vlnk Dl ++++ +  ++++ f     +++av+a ++++++  ++a++++l++
  MMETSP1061-20121228|2370_1 520 AFRATLEEVEEADVLVHVIDVANPSWEKQErAVRAVLSdmgvaDKPVVRVLNKIDLLNEDEAEilQYEAAFA---DDTVAVSALTGEGMEDFVEAVEEALNS 618
                 66777789999999999999988876555414444443444459************9877665114455555...567899999999999999998888765 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.2   1.7e-07   5.2e-05      19     184 ..     449     611 ..     437     613 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.7e-07
   TIGR03598  19 peiafaGrSNvGKSsliNaLtnrkklart...SktPGrTqlinffev..neelrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDirhel.kelDlellellkea...kipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkkegieelkae 184
                 p + ++G+ N+GKSs++N+Lt+   +a+    ++    T+++ +     + e+ l D  G+   k +++  ++++++    Le+ e+   +v ++D+  +  +++++ + ++l++    + pv+ vl+K+D l++ e++  + +++++++++     ++++S+l++eg+e++ ++
  MMETSP1061-20121228|2370_1 449 PLLSLVGYTNAGKSSVLNSLTRAGVMAESmlfATLDPTTRKVKLPGEstHPEFLLTDTVGF-IQKLPTNLVAAFRAT----LEEVEEADVLVHVIDVANPSwEKQERAVRAVLSDMgvaDKPVVRVLNKIDLLNEDEAE--ILQYEAAFADD-----TVAVSALTGEGMEDFVEA 611
                 55789*****************998886422233444788888864421669999999888.456676666666665....56677778888888888775144455555555544233779999999*9999987764..34444444443.....577888888888877665 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.2e-05      0.01     160     218 ..     453     512 ..     423     523 .. 0.73
   2 !    5.7   0.1    0.0049       1.5      54     107 ..     521     579 ..     514     586 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.2e-05
   TIGR03597 160 vvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipl...dkesvllDtpGiine 218
                 +vG tN GKSs++N+l +     +++        TT  +++ p    + e  l Dt G+i++
  MMETSP1061-20121228|2370_1 453 LVGYTNAGKSSVLNSLTRAGVMAESM-LFATLDPTTR-KVKLPGestHPEFLLTDTVGFIQK 512
                 79**************9988888884.4444445553.333433111456678899998875 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0049
   TIGR03597  54 flnllnslsekkalvvavvDifd.....legslikelkrf.vkenkvllvvNKidllpks 107
                 f+++l++++e   ++v+v+D+ +      e ++   l+++ v +++v+ v NKidll++ 
  MMETSP1061-20121228|2370_1 521 FRATLEEVEEA-DVLVHVIDVANpswekQERAVRAVLSDMgVADKPVVRVLNKIDLLNED 579
                 66777776654.466789998762222123344444444446899************976 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.3e-06    0.0017       7      50 ..     453     495 ..     450     502 .. 0.92
   2 ?   -2.2   0.1       1.2   3.6e+02     178     235 ..     540     592 ..     523     622 .. 0.61

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.3e-06
   TIGR00092   7 ivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpde 50 
                 +vG +n Gks + +++t+a +  a    fat++p t +v++p e
  MMETSP1061-20121228|2370_1 453 LVGYTNAGKSSVLNSLTRAGV-MAESMLFATLDPTTRKVKLPGE 495
                 79*******************.788899************9976 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.2
   TIGR00092 178 vrklklneee..lkiikslnlLtakPilivanvseddlvnkenkllekvkeivaefkegd 235
                 v++ +++++e  ++++ s   +  kP++ v+n  + dl n+++ ++++  +++a     d
  MMETSP1061-20121228|2370_1 540 VANPSWEKQEraVRAVLSDMGVADKPVVRVLN--KIDLLNEDEAEILQYEAAFA-----D 592
                 44555555551133444444556777777765..56788877777777777766.....3 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.24        76       4      26 ..     452     474 ..     450     498 .. 0.82
   2 !   12.4   0.2   9.5e-05      0.03      54     139 ..     522     611 ..     516     614 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.24
   TIGR02528   4 mliGsvgcGkttLtqaLkgeeik 26 
                  l+G +++Gk ++ ++L+   + 
  MMETSP1061-20121228|2370_1 452 SLVGYTNAGKSSVLNSLTRAGVM 474
                 689*************9877665 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 9.5e-05
   TIGR02528  54 saLlvtaadadvivlvqsat.....deesllspgfasifak..eviglvtkidlaeadkeierakelLeeagaekiFeissvdekgleelvdy 139
                 +a l    +adv+v v ++      ++e  + + ++++++   +v+ ++ kidl + + e+e    + e a+a++   +s++  +g+e+ v+ 
  MMETSP1061-20121228|2370_1 522 RATLEEVEEADVLVHVIDVAnpsweKQERAVRAVLSDMGVAdkPVVRVLNKIDLLN-EDEAEI--LQYEAAFADDTVAVSALTGEGMEDFVEA 611
                 5666778899***9999875222215678899******985559**********97.555666..678999****99**99999999988765 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       2.7   8.5e+02     214     260 ..      31      77 ..      12      90 .. 0.67
   2 ?    9.9   0.2   0.00018     0.057       1     153 [.     455     634 ..     455     699 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 2.7
   TIGR00437 214 laevvkkesesklsateiadeekvlveksigtkvldrflglliilsv 260
                 ++ +++++++s++s++++a+ ++ ++   +g++   r +  +++l  
  MMETSP1061-20121228|2370_1  31 TNGIHEQTNRSNRSKEKMARSSRHQIGTGMGRRKSSRTTASFAVLLA 77 
                 45667777788888888888777777777766666655555554444 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00018
   TIGR00437   1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkge....dieivDlPGiYsLttvsldEkvardyllnekadLvvnvvdasn.....leRnLyltlQll.elgiplilalNlvdeAekkgirideekLeerLGvpvvplsatkgrgieelkkaide...................e 153
                 G  N GKs+++n Lt + +        T +  + k++l ge    ++ ++D+ G  +  ++ l         + e+ad++v+v+d +n      eR+++  l  +  +++p++ +lN++d+ +    +i   + e+      v +sa  g+g+e+  +a++e                   +
  MMETSP1061-20121228|2370_1 455 GYTNAGKSSVLNSLTRAGVMAESMLFATLDPTTRKVKLPGEsthpEFLLTDTVGFIQKLPTNLVAAFRATLEEVEEADVLVHVIDVANpswekQERAVRAVLSDMgVADKPVVRVLNKIDLLNEDEAEI--LQYEAAFADDTVAVSALTGEGMEDFVEAVEEalnslltaielvipynkgqD 634
                 678****************999999999999999998877722225669*****765555555466666667789**********98744333578887666544145679999*******99998877..4678899999999**********9999999655555444444444444430 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.60
# Mc/sec: 1566.27
//
Query:       MMETSP1061-20121228|2375_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-24   83.2   0.0    9.2e-11   39.1   0.0    3.1  3  TIGR00261 traB: TraB family protein
  ------ inclusion threshold ------
      0.012   13.7   0.1      0.079   11.2   0.0    2.4  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
        3.7    6.0   9.1       0.26    9.6   1.2    2.8  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR00261  traB: TraB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   1.5e-07   0.00021       5      43 ..     120     158 ..     117     163 .. 0.94
   2 !   22.1   0.0     1e-08   1.4e-05      84     127 ..     249     292 ..     245     304 .. 0.91
   3 !   39.1   0.0   6.7e-14   9.2e-11     147     215 ..     346     413 ..     329     420 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.5e-07
   TIGR00261   5 diyivGtahvskksveevaeviesvkPdaiavelderry 43 
                  iy++Gtah+s  s     +++   +P+++ +eld++r 
  MMETSP1061-20121228|2375_1 120 IIYLLGTAHISSTSAALAGQLVRDTNPNGVFIELDPKRV 158
                 59**********************************995 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 1e-08
   TIGR00261  84 etGikPGsemkkaiekakkaglpvllidrdieltlkrlwdkltf 127
                 + G   G+e  +a+   kk g++++l drd+e tl+r+ + lt 
  MMETSP1061-20121228|2375_1 249 SAGFDSGEEFVTAVREGKKIGADIVLGDRDVEATLRRVTEGLTK 292
                 679999********************************998874 PP

  == domain 3    score: 39.1 bits;  conditional E-value: 6.7e-14
   TIGR00261 147 levdelleedvleklvkelkkisPkvkkvliderdefiakklleaekrknsivavvGaGhveGivralk 215
                   v+ ++ ++ +  ++ +l++ +P +++ l+ erd+++a  l +++++ +sivavvG  h +Gi+  l+
  MMETSP1061-20121228|2375_1 346 SFVETMKTKENVRLIMGQLQRLAPFLYEALVSERDVYMATGL-NGLNELESIVAVVGIAHADGIETSLQ 413
                 56899**********************************985.777779***************99886 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.8e-05     0.079       6      45 ..      65     105 ..      62     110 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.8e-05
   TIGR02811   6 kadlsRRdLLkgl.avgaaagavaaatgrvasasaaaepse 45 
                  +  sRR+ L +l +++aaa +v+ +t+    as ++ +++
  MMETSP1061-20121228|2375_1  65 SSSSSRRRWLGNLcGTAAAAVGVVSTTSLPSWASSVVSSAS 105
                 56789999999875899999999999999888887777665 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.2   0.00019      0.26       2      29 .]      69      97 ..      68      97 .. 0.74
   2 ?   -1.3   0.6      0.54   7.3e+02       7      15 ..     229     237 ..     228     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00019
   TIGR01409  2 sRRdFLkaa.aaagaaaglglllpsparA 29
                sRR+ L+ + ++a+aa+g+ + ++ p++A
  MMETSP1061-20121228|2375_1 69 SRRRWLGNLcGTAAAAVGVVSTTSLPSWA 97
                9********75555555554578889988 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.54
   TIGR01409   7 Lkaaaaaga 15 
                 +kaa+aa++
  MMETSP1061-20121228|2375_1 229 MKAATAAVG 237
                 788988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1938.87
//
Query:       MMETSP1061-20121228|2374_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-216  716.6   1.2     3e-216  716.4   0.8    1.0  1  TIGR00979 fumC_II: fumarate hydratase, class II
   3.2e-137  456.1   0.3   3.5e-137  455.9   0.2    1.0  1  TIGR00839 aspA: aspartate ammonia-lyase
      5e-31  105.7   0.0    6.9e-31  105.3   0.0    1.1  1  TIGR00928 purB: adenylosuccinate lyase
    1.8e-24   84.1   1.1    4.2e-24   82.9   0.8    1.6  1  TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase
    4.1e-22   76.6   0.0    1.2e-21   75.1   0.0    1.7  1  TIGR00838 argH: argininosuccinate lyase


Domain annotation for each model (and alignments):
>> TIGR00979  fumC_II: fumarate hydratase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  716.4   0.8  3.6e-219    3e-216       2     458 .]      21     479 ..      20     479 .. 1.00

  Alignments for each domain:
  == domain 1    score: 716.4 bits;  conditional E-value: 3.6e-219
   TIGR00979   2 riekdslGeveveedklwgaqtqrslenfkig..kekmPkelikalailkkaaalvnedlGkldaekaeaiakaadeilagkfddefPlvvwqtGsGtqsnmnvnevianraiellggklgskkkvhPnddvnksqssndtfPtamhiaavlavkekliPaleklkktldekskefkeivkiGrthlqdatPltlgqefsgyvaqlekslerieeslkklselalGgtavGtGlnakkefaekvaeelakltgekfvtapnkfealaahdalveahGalkalaasllkiandirflasGPrcGlgelllPenePGssimPGkvnPtqsealtmvcaqvlGndatialagsqGnfelnvfkPviiynflqsvellsdavesfeehlvvGlevnkerikellekslmlvtalnphiGydkaakiakkahkegitlkeaalelgllseeefdklvvPekmvg 458
                 r+e+ds+G+++++++ l+g qtqrsl nf ig  + kmP +++ a+a++kk+ a    ++Gk++a  a aia+aade+++gk+d++fPlv++qtGsGtq+nmnvnev++nrai++lgg +g+k++vhPnd+vn++qssnd+fPtamhi+  + v+e ++P l++l+ +l++kske+++ivkiGrth qdatPlt+gqefsgy++q+ ++++r+e++l+ + +lalGgtavGtGln+ k+++  +a++lak ++ +fvtapnkfealaahd++ve++G+l+++a+ l kiand+r+l+sGPrcGlgel+lP+nePGssimPGkvnPtq+ealtmvcaqv+Gn+++++++g+qG+felnvfkPv+ +n+l+s +l++d++ sf++++v Gl vn+er+ el++ slmlvtalnphiGydka++iak+ahk+g+tlkeaa++ g l++e++d+++vP +m+g
  MMETSP1061-20121228|2374_1  21 RVESDSMGSLDIPANCLYGCQTQRSLINFPIGgaESKMPLQIVYAMALVKKCCAEYHAEIGKMEATVAGAIAEAADEVMDGKLDKHFPLVIFQTGSGTQTNMNVNEVLSNRAIQILGGAVGTKSPVHPNDHVNMGQSSNDSFPTAMHISIAKMVTEVTLPGLKTLHASLSQKSKEYAHIVKIGRTHCQDATPLTVGQEFSGYAQQVGYGIQRLENALPSICRLALGGTAVGTGLNTTKGYDVTIADRLAKAAKLPFVTAPNKFEALAAHDSVVEVSGVLNTIACGLNKIANDLRLLGSGPRCGLGELALPANEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGAQGHFELNVFKPVMCANVLHSARLIGDSALSFTTQCVDGLTVNEERVAELMNASLMLVTALNPHIGYDKASEIAKNAHKQGLTLKEAAVASGHLTAEQLDEWIVPGDMIG 479
                 89*****************************987889************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************96 PP

>> TIGR00839  aspA: aspartate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.9   0.2  4.3e-140  3.5e-137       1     459 [.      21     480 ..      21     481 .] 0.99

  Alignments for each domain:
  == domain 1    score: 455.9 bits;  conditional E-value: 4.3e-140
   TIGR00839   1 riekdllGekeveaevyyGiqtlrasenfaisnekisdvpefvkalvlvkkaaalanvelkaidekiakaivaacdeileGkyldqfivdviqGGaGtsvnmntnevianlalellGhkkGeyqflnpndhvnksqstndayptalkiavyeslekl.vdkiealrdafeqkakefadvlkmGrtqlqdavpltlGqefeayalllerdvkrikrtrelllevnlGataiGtGlnadkeysklvvkklaevtGlplvpaenlieatsdtgayvevsgalkriavklskvcndlrllssGpraGlneinlpelqaGssimpakvnpvvpevvnqvcfkviGndttvtlaaeaGqlqlnvlepviafallesisiltnaiesltdkcveGitanekicedyvfnsiGivtalnpfiGyekaalvakeaiktgksvrdvvlekdllteeelddilsvenllkp 459
                 r+e+d +G  +++a+  yG qt r+  nf+i + + +   ++v a++lvkk +a    e+++++  +a ai +a+de+++Gk+   f+  ++q G+Gt +nmn+nev++n+a+++lG   G    ++pndhvn+ qs+nd++pta++i++ ++++++ +  +++l+ +++qk+ke+a+++k+Grt+ qda plt+Gqef  ya  +   ++r++++   +  + lG+ta+GtGln+ k+y   +  +la+ + lp+v+a n  ea    ++ vevsg+l  ia  l k++ndlrll sGpr Gl e++lp+ ++Gssimp+kvnp   e +  vc +v+Gn  +vt+    G ++lnv++pv++ ++l+s  +++++  s+t++cv+G+t+ne+++ + +  s+ +vtalnp+iGy+ka+ +ak+a k g ++++ ++  + lt e+ld+ + + +++ p
  MMETSP1061-20121228|2374_1  21 RVESDSMGSLDIPANCLYGCQTQRSLINFPIGGAESKMPLQIVYAMALVKKCCAEYHAEIGKMEATVAGAIAEAADEVMDGKLDKHFPLVIFQTGSGTQTNMNVNEVLSNRAIQILGGAVGTKSPVHPNDHVNMGQSSNDSFPTAMHISIAKMVTEVtLPGLKTLHASLSQKSKEYAHIVKIGRTHCQDATPLTVGQEFSGYAQQVGYGIQRLENALPSICRLALGGTAVGTGLNTTKGYDVTIADRLAKAAKLPFVTAPNKFEALAAHDSVVEVSGVLNTIACGLNKIANDLRLLGSGPRCGLGELALPANEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGAQGHFELNVFKPVMCANVLHSARLIGDSALSFTTQCVDGLTVNEERVAELMNASLMLVTALNPHIGYDKASEIAKNAHKQGLTLKEAAVASGHLTAEQLDEWIVPGDMIGP 480
                 89*******************************998877899***************************************************************************************************************99873678*****************************************************************************************************************************************************************************************************************************************************************************************************999988 PP

>> TIGR00928  purB: adenylosuccinate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   0.0   8.4e-34   6.9e-31      88     375 ..     149     444 ..     133     476 .. 0.84

  Alignments for each domain:
  == domain 1    score: 105.3 bits;  conditional E-value: 8.4e-34
   TIGR00928  88 sefiHfGlTSedivdtaealllrea.leiilkklkklieelkekaeeykdtvmlgrtHgqhAepttlGkklalwaeelkrqlerLkeakerikvggisG.avgtqaaaleev..eeveelv.telLGlktalist.Qiiqrdrhaellaalallaatleklavdirllqrtevleveekfe.kgqvGSSaMPhKrNpidsErveGlarvirsvlsaalekv.vlwheRdltdSsveRviLpdsliladiilksllkvvkkLvvypenikrnLelelgllasekvlielvekglgre 375
                 + ++ +G  S+d   ta+ + + +   e+ l+ lk l + l +k +ey  +v +grtH q A+p t+G ++  +a+++   ++rL++a  +i+  ++ G avgt ++  +    +  ++l+ + +L + ta++       +d+ +e+  +l  +a  l+k+a d+rll +     + e +  +++ GSS MP K+Np ++E ++ ++  + ++ +a+        +e ++++ ++  ++L ++ +  d +l+ +++ v++L+v++e++++ ++ +l l+ + +  i   ++    +
  MMETSP1061-20121228|2374_1 149 NDHVNMGQSSNDSFPTAMHISIAKMvTEVTLPGLKTLHASLSQKSKEYAHIVKIGRTHCQDATPLTVGQEFSGYAQQVGYGIQRLENALPSICRLALGGtAVGTGLNTTKGYdvTIADRLAkAAKLPFVTAPNKFeALAAHDSVVEVSGVLNTIACGLNKIANDLRLLGSGPRCGLGELALpANEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTVGGaQGHFELNVFKPVMCANVLHSARLIGDSALSFTTQCVDGLTVNEERVAELMNASLMLVTALNPHIGYDKASEIAK 444
                 57999*****************9999******************************************************************9999999569******99878533444432346888888888768899****************************8655554444444345********************9988777776666555538899***********************************************99999877655454444444444 PP

>> TIGR02426  protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.8   5.2e-27   4.2e-24      78     288 ..     133     358 ..      61     371 .. 0.77

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 5.2e-27
   TIGR02426  78 vkalrkavae....eaaryvHlGaTSQDviDTalmLql.rdaldllladlerlaeaLaelaarhrdtpltarTllQqAvpttvglkaagwlaavlrardrlealrtealalqfGG.AaGtlaa.lekkglavaealAaelgLeapalpWh....tqrdriaelaaaLalvagalgkiaqDvalla...qtevgevle.aggGGSSampHKrNPvaaevlaaaarra 288
                 ++ l  av++    + + +v +G  S D   Ta+ + + ++++++ l+ l++l + L++  ++ ++   ++rT  Q A+p tvg+ + g+ + v    +rle+   ++  l +GG A+Gt  + ++ + +++a++lA++ +L+  ++p +    ++ d ++e++ +L ++a  l kia+D+ ll    +   ge++  a+  GSS mp K NP+++e+l+ + +++
  MMETSP1061-20121228|2374_1 133 IQILGGAVGTkspvHPNDHVNMGQSSNDSFPTAMHISIaKMVTEVTLPGLKTLHASLSQKSKEYAHIVKIGRTHCQDATPLTVGQEFSGYAQQVGYGIQRLENALPSICRLALGGtAVGTGLNtTKGYDVTIADRLAKAAKLPFVTAPNKfealAAHDSVVEVSGVLNTIACGLNKIANDLRLLGsgpRCGLGELALpANEPGSSIMPGKVNPTQCEALTMVCAQV 358
                 445556666666555578999************98875267889999********************************************************999********967799555488888************9976665542233789*************************9863336788998886778****************988765544 PP

>> TIGR00838  argH: argininosuccinate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   1.4e-24   1.2e-21     100     369 ..     151     431 ..     119     473 .. 0.81

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 1.4e-24
   TIGR00838 100 klhtgrsRnDqvatdlrlylrdkvkel.aealkdllkalvekAekevetlmpgytHLqrAqPitlaHhllayaemlerDleRlldalkRvnksPlGsgAl.....agtsfei...drellaelLgFdavvensldavsdRDfiiEllsaaallmvhlsrlaEelilfsse.Efgfvelsd.evssgssimPqKKnpDvaEliRgktgrviGnltglltilKalPlaYnkDlqE..d.kealfdalktveellevvtgllkelkvnkerleeaakknfalatdlA 369
                 ++  g+s nD   t +++ + + v+e+ +  lk l ++l +k ++  +++  g tH q A P+t++  +  ya+ +   ++Rl +al  + +  lG +A+     +++++++   dr + a++L F + + n  +a ++ D ++E+  ++  ++  l ++a++l l  s    g+ el+  +   gssimP K np  +E +   +++v+Gn +++ +   +    ++ ++    +  + l+ a     ++l+  t  ++ l+vn+er++e+ +++ +l+t l 
  MMETSP1061-20121228|2374_1 151 HVNMGQSSNDSFPTAMHISIAKMVTEVtLPGLKTLHASLSQKSKEYAHIVKIGRTHCQDATPLTVGQEFSGYAQQVGYGIQRLENALPSICRLALGGTAVgtglnTTKGYDVtiaDRLAKAAKLPFVT-APNKFEALAAHDSVVEVSGVLNTIACGLNKIANDLRLLGSGpRCGLGELALpANEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTV--GGAQGHFELNVFKpvMcANVLHSARLIGDSALSFTTQCVDGLTVNEERVAELMNASLMLVTALN 431
                 5778**********************72589***********************************************************99999999873333345678866679999*******76.5799*******************************988775256777776414568***************************988644..44444444333211121334444444556788999999************99999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1269.74
//
Query:       MMETSP1061-20121228|2378_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 903.62
//
Query:       MMETSP1061-20121228|2379_1  [L=649]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 2196.43
//
Query:       MMETSP1061-20121228|2385_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-50  167.2   0.0    1.4e-49  166.4   0.0    1.4  1  TIGR01091 upp: uracil phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01091  upp: uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.0   3.5e-53   1.4e-49       2     206 ..      36     254 ..      35     255 .. 0.91

  Alignments for each domain:
  == domain 1    score: 166.4 bits;  conditional E-value: 3.5e-53
   TIGR01091   2 vkviehpLikhkltvlRdketetkefrellkelgsllayeatkdlele.evevetplgeakakelkd...........kkvvlvpiLrAglglvegvlkllpeakvglvglkRdeet.lkievyysklpediee.revivlDPmlAtGgtvvealellkekgakkikvlsivaapeglekvekahpdveiyvaaidekLnekgYIvPGLGDaGDrafgt 206
                 ++v +hp+  hk+t+lR+++t++ +fr++l+e++  l yeatk+l+++ +v+v  plg+ + ++ +d            kv+lvpiLr glg+++++l+llp+ +v ++g++R     + ++ y+++lp+ +   + + +lDPm+    t+ +++ +lk+ g+ ki ++++va++ gle + k+hpdv++ v  +d++L+e g ++PG+GD+GDr+fgt
  MMETSP1061-20121228|2385_1  36 ITVTSHPVLSHKITMLRSSKTSPGTFRSILREVTYHLGYEATKNLNVQsNVRVTVPLGKESESHHEDlrdadcgfrllDKVALVPILRSGLGMTDSMLELLPNSSVHHIGMYRTPGVhVAPVQYFNRLPRGKCSaDVAYILDPMVGSAATANAVIAILKKWGVPKIHIVTVVASKAGLELLAKNHPDVDVTVGVVDPNLTECGIVLPGMGDVGDRLFGT 254
                 78899*****************************************973699*****998766655433333334333469*********************************998899*********9765427889******************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1400.03
//
Query:       MMETSP1061-20121228|2380_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1817.39
//
Query:       MMETSP1061-20121228|2382_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-117  390.9   0.6    3.4e-84  280.8   0.1    4.0  3  TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase
    1.5e-93  311.9   8.5    5.3e-77  257.4   0.8    3.9  3  TIGR02643 T_phosphoryl: thymidine phosphorylase
    7.3e-42  141.3   0.6    6.4e-29   98.6   0.1    4.0  4  TIGR03327 AMP_phos: AMP phosphorylase
    2.2e-38  129.8   0.9    6.9e-27   91.8   0.3    4.1  4  TIGR02645 ARCH_P_rylase: putative thymidine phosphorylase


Domain annotation for each model (and alignments):
>> TIGR02644  Y_phosphoryl: pyrimidine-nucleoside phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   1.6e-17   1.6e-14      12      71 ..      58     117 ..      52     128 .. 0.92
   2 !  280.8   0.1   3.4e-87   3.4e-84      73     284 ..     147     367 ..     136     386 .. 0.90
   3 !   47.9   0.1   1.7e-16   1.7e-13     287     407 ..     420     565 ..     413     574 .. 0.65

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 1.6e-17
   TIGR02644  12 kklseeeinflingytkgeiadyQisallmaiyfkgldkeEtlalTkamvesGevldlse 71 
                    ++ee++ +i+ y++g i+dyQ+sa+lma+ f  l+ +Et++lT+ ++esG+ l++ e
  MMETSP1061-20121228|2382_1  58 GIYTDEELHSFISMYVRGDIPDYQMSAWLMAVCFCPLTPRETATLTQCYAESGDLLEWPE 117
                 56789****************************************************986 PP

  == domain 2    score: 280.8 bits;  conditional E-value: 3.4e-87
   TIGR02644  73 kkikvDKHStGGvGDkvsLvlaPlvaalgvkvaklSGRgLghTGGTlDKLe.sipGfktelseeefieivkk.......vglaiigqtkdlapaDkklYalRdvtgTvdslpLiasSilsKKlaagadalvlDvkvGkGaFmktleeakeLakelveigkkagrk.vvalltdmnepLgkaiGNalEvkeavevLkgegpadlkelvlalaaemlllakla 284
                 + + vDKHS+GGvGDk+sL+laPlva++gv+v+++ GRgLghTGGT+DKLe s+pG+k+e s+e+f +iv         vg+ai++++ +l+paD+k+YalRdvt+T + l+Li++Si+sKK+a+  d+lvlDvk G+GaFm+t+e+a+ La++lv++g++ g + ++a ltdmn+p+g+a+GN lEv+e+++v+kg+ ++d   l  +l a ++++a+++
  MMETSP1061-20121228|2382_1 147 RPPLVDKHSSGGVGDKISLILAPLVATCGVAVPMIAGRGLGHTGGTIDKLEtSFPGYKVEHSTEDFSAIVLGkgadspgVGCAIVAAGPELCPADRKIYALRDVTATGSCLSLITASIMSKKIAERPDSLVLDVKHGEGAFMETVEDARLLAESLVAVGEANGLTpTTAFLTDMNHPIGRAVGNWLEVEECIDVMKGNLRHDRLRLGRDLIALVVVQAGQM 367
                 5689**********************************************978***************9964344455689********************************************************************************9964399******************************76777777777777777776654 PP

  == domain 3    score: 47.9 bits;  conditional E-value: 1.7e-16
   TIGR02644 287 eeeakekleevlesgkalekfkefveaqgGdlevlkee.k...klakakkk............eevkaeksgv.........ieeidaeelgliavelgaGRakkedkidleaGielekkvgdkvkkgdllltlyssdeekaeeaa 407
                  ee +++++evl+sgk le+f++++ aqg +++ ++++ +   +++ ak+             +e +a+             i +i a+e+g +av lgaGR k +d +d +aG+++ k++gd v  gd+l+t+y+++++++ +aa
  MMETSP1061-20121228|2382_1 420 LEECIRHAHEVLDSGKVLETFRRMLLAQGAEATHVHTAlDtpgSIPLAKYLaawvyreeedagTEATATATAAitgntpctrIVDIPAKEVGDVAVVLGAGRFKASDDVDGQAGLVFGKQTGDAVVDGDVLVTVYTNRSQEVADAA 565
                 5778888888888888888888888888888774433212111222222220000011111111222332222111112222667899*************************************************887766554 PP

>> TIGR02643  T_phosphoryl: thymidine phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.4e-08   2.5e-05      14      78 ..      58     121 ..      52     136 .. 0.88
   2 !  257.4   0.8   5.1e-80   5.3e-77      78     288 ..     148     366 ..     142     389 .. 0.87
   3 !   31.6   1.3   1.7e-11   1.7e-08     292     432 ..     420     585 ..     413     588 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.4e-08
   TIGR02643  14 lslsdeeiaafvegvtddsvsegqiaalamavyfngleldekvaltlamrdsGdvldwkdldlng 78 
                    +dee+++f++    +++ + q++a  mav f  l+  e+ +lt    +sGd l+w  + l+g
  MMETSP1061-20121228|2382_1  58 GIYTDEELHSFISMYVRGDIPDYQMSAWLMAVCFCPLTPRETATLTQCYAESGDLLEWP-ETLEG 121
                 556789****************************************************8.55555 PP

  == domain 2    score: 257.4 bits;  conditional E-value: 5.1e-80
   TIGR02643  78 gPvvdkhstGGvGdvvslmlaPivaacGgyvPmisGrGlGhtGGtldkle.aiPGydvaPdeelfrkvvk.......dvGvaiiGqtadlaPadkrlyairdvtatvesiplitasilskklaaGldalvldvkvGnGafmesleeseelarslvevangaGvr.ttalitdmnqalasaaGnavevreavdfltGekrdkrleevtlalaaellvsgkl 288
                  P+vdkhs+GGvGd +sl+laP+va+cG +vPmi+GrGlGhtGGt+dkle + PGy+v  ++e f  +v         vG+ai+    +l Pad+++ya+rdvtat   ++litasi+skk+a+  d+lvldvk G+Gafme++e+++ la+slv v++  G++ tta +tdmn++++ a Gn +ev+e++d ++G+ r+ rl+     l a ++v+++ 
  MMETSP1061-20121228|2382_1 148 PPLVDKHSSGGVGDKISLILAPLVATCGVAVPMIAGRGLGHTGGTIDKLEtSFPGYKVEHSTEDFSAIVLgkgadspGVGCAIVAAGPELCPADRKIYALRDVTATGSCLSLITASIMSKKIAERPDSLVLDVKHGEGAFMETVEDARLLAESLVAVGEANGLTpTTAFLTDMNHPIGRAVGNWLEVEECIDVMKGNLRHDRLRLGR-DLIALVVVQAGQ 366
                 59***********************************************9569**************9953333333589**********************************************************************************95499***********************************97443.333333333333 PP

  == domain 3    score: 31.6 bits;  conditional E-value: 1.7e-11
   TIGR02643 292 eaeaeakleavlesGraaerfarmvaalgGPadfvekp.........ekylakaaiakavkaareg...............ylseidtrelGlavvalGGGrrkaddkldlsvGltdllelGekvekeeplavvhaadeed.aeeaakavkkalkiadeaPeeakv 432
                  +e+ +++++vl+sG+  e+f rm+ a+g  a  v+           +kyla    ++   a +e                 + +i ++e+G + v lG Gr ka+d +d + Gl    + G+ v  +++l++v+++ +++ a++a ++v+++++++ ++ +++++
  MMETSP1061-20121228|2382_1 420 LEECIRHAHEVLDSGKVLETFRRMLLAQGAEATHVHTAldtpgsiplAKYLAAWVYREEEDAGTEAtatataaitgntpctRIVDIPAKEVGDVAVVLGAGRFKASDDVDGQAGLVFGKQTGDAVVDGDVLVTVYTNRSQEvADAALHRVRRVVRFETSTTTTTTT 585
                 567888999*******************99998876532222333336888753332222222211122222233455556788999***********************************************987666615566799*****999887766655 PP

>> TIGR03327  AMP_phos: AMP phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.3e-05     0.013     101     157 ..      61     117 ..      52     121 .. 0.93
   2 !   98.6   0.1   6.2e-32   6.4e-29     157     350 ..     147     350 ..     143     385 .. 0.83
   3 !    7.0   0.0   0.00036      0.37     374     401 ..     424     451 ..     415     462 .. 0.85
   4 !   18.6   0.2   1.1e-07   0.00012     424     481 ..     501     565 ..     474     579 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
   TIGR03327 101 kkeeieaivedivdekLsdielsafvtasyingldldeiealtramietGdklefdk 157
                 + ee++  ++  v   + d ++sa+++a+    l+  e+++lt+  +e+Gd le+ +
  MMETSP1061-20121228|2382_1  61 TDEELHSFISMYVRGDIPDYQMSAWLMAVCFCPLTPRETATLTQCYAESGDLLEWPE 117
                 67899999**********************************************965 PP

  == domain 2    score: 98.6 bits;  conditional E-value: 6.2e-32
   TIGR03327 157 kkpivDkhsiGGvpGnkisllvvpivaaaGlliPktssraitsaaGtaDvmevla...nvelsadeikeivekvg......gvlvWGGavnlaPaDDkiikverplsiDpe.gqllasvmakklavGadkvviDiPvGkgakvktveearkLardfielgerLglkveca.ltyGgqPiGraiGPaLeakealkvledsegPesL 350
                 + p+vDkhs GGv G+kisl++ p+va+ G+ +P  + r +  ++Gt D +e      +ve s+++   iv   g      g+ +   + +l+PaD ki       +     +++ as+m+kk+a   d +v+D+  G+ga ++tve+ar La+ ++ +ge  gl+  +a lt  ++PiGra+G  Le+ e ++v++++   + L
  MMETSP1061-20121228|2382_1 147 RPPLVDKHSSGGV-GDKISLILAPLVATCGVAVPMIAGRGLGHTGGTIDKLETSFpgyKVEHSTEDFSAIVLGKGadspgvGCAIVAAGPELCPADRKIYALRDVTATGSClSLITASIMSKKIAERPDSLVLDVKHGEGAFMETVEDARLLAESLVAVGEANGLTPTTAfLTDMNHPIGRAVGNWLEVEECIDVMKGNLRHDRL 350
                 6789********9.9*************************************9752337***********976543333335666667789******99888776666554145669***********************************************98655539************************987665555 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.00036
   TIGR03327 374 kelakeilesGkalekfkeiiaaqGGdp 401
                  ++a+e+l+sGk le f+ ++ aqG + 
  MMETSP1061-20121228|2382_1 424 IRHAHEVLDSGKVLETFRRMLLAQGAEA 451
                 689**********************876 PP

  == domain 4    score: 18.6 bits;  conditional E-value: 1.1e-07
   TIGR03327 424 yvveidnkaivkiareaGaPn.......DkgaGvllhkkvGekvkkGDplltiyaekeerLekai 481
                  +v+i  k++ ++a   Ga +       D +aG++  k++G+ v +GD+l+t+y+++++ + +a 
  MMETSP1061-20121228|2382_1 501 RIVDIPAKEVGDVAVVLGAGRfkasddvDGQAGLVFGKQTGDAVVDGDVLVTVYTNRSQEVADAA 565
                 4677777777777776666532233333779*************************999887653 PP

>> TIGR02645  ARCH_P_rylase: putative thymidine phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.1e-07   0.00073     101     156 ..      62     117 ..      54     120 .. 0.94
   2 !   91.8   0.3   6.8e-30   6.9e-27     156     342 ..     147     343 ..     144     378 .. 0.86
   3 !    6.8   0.0    0.0004      0.41     374     400 ..     424     450 ..     416     462 .. 0.85
   4 !   10.1   0.0   4.1e-05     0.042     442     480 ..     527     565 ..     482     575 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7.1e-07
   TIGR02645 101 keeikaivsdivdeklsdveisafltalaingldvdeiealtiamvetGetlewdr 156
                  ee+++ +s  v   + d ++sa+l+a+    l+  e+++lt+  +e+G+ lew++
  MMETSP1061-20121228|2382_1  62 DEELHSFISMYVRGDIPDYQMSAWLMAVCFCPLTPRETATLTQCYAESGDLLEWPE 117
                 68999999**********************************************97 PP

  == domain 2    score: 91.8 bits;  conditional E-value: 6.8e-30
   TIGR02645 156 revivDkhsiGGvPGnktsllvvpivaaaGLliPktssraitsaaGtaDvvevl...trvelsveelkrivekvg......gclvWGGalnlaPaDDvlikverpLslDp.eeqllasilskkiaiGstkvliDiPvGpgakvksvkeaerLakdlielgkrlgvt.vevvityGsqPiGraiGPaLeakealavLes 342
                 r+++vDkhs GGv G+k+sl++ p+va+ G+ +P  + r +  ++Gt D +e+     +ve s+e+  +iv   g      gc +     +l PaD ++  +       +  +++ asi+skkia   + +++D+  G+ga +++v++a+ La+ l+ +g+  g t ++   t+ + PiGra+G  Le++e + v++ 
  MMETSP1061-20121228|2382_1 147 RPPLVDKHSSGGV-GDKISLILAPLVATCGVAVPMIAGRGLGHTGGTIDKLETSfpgYKVEHSTEDFSAIVLGKGadspgvGCAIVAAGPELCPADRKIYALRDVTATGScLSLITASIMSKKIAERPDSLVLDVKHGEGAFMETVEDARLLAESLVAVGEANGLTpTTAFLTDMNHPIGRAVGNWLEVEECIDVMKG 343
                 5789********9.9*************************************9633358***********954432222234666666679*****99988877666655156788************************************************98355668*********************99875 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0004
   TIGR02645 374 kelarelLdsGkaleklkeiieaqGgd 400
                  + a+e+LdsGk le +++++ aqG++
  MMETSP1061-20121228|2382_1 424 IRHAHEVLDSGKVLETFRRMLLAQGAE 450
                 5689*********************98 PP

  == domain 4    score: 10.1 bits;  conditional E-value: 4.1e-05
   TIGR02645 442 PedkgaGvklhvkvgdkvkkGdplytiyaeseekldkai 480
                   d +aG+ + ++ gd v +Gd+l t+y++ +++   a+
  MMETSP1061-20121228|2382_1 527 DVDGQAGLVFGKQTGDAVVDGDVLVTVYTNRSQEVADAA 565
                 45779************************9988875554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.50
# Mc/sec: 1652.50
//
Query:       MMETSP1061-20121228|2386_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 534.90
//
Query:       MMETSP1061-20121228|2387_1  [L=977]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   11.3   0.0      0.022   10.7   0.0    1.1  1  TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit


Domain annotation for each model (and alignments):
>> TIGR02965  xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.4e-06     0.022     662     744 ..     429     510 ..     425     522 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.4e-06
   TIGR02965 662 vwdekGrlrthaPstykiPa..vsdrPkdfnvrlleaaenaedtihrskavGePPlllglsvlsalkdavasvadykvlPkldaP 744
                  w+e+G l   +  tyk+P+   +drP + +  l+    +++d+ h+ ++  eP l  +++  sa  + ++  a+ + +P+ d P
  MMETSP1061-20121228|2387_1 429 TWNESGALLGGGEVTYKLPTniYDDRPVSTELFLAS---ERDDSHHKERTSVEPLLSTTVTSSSATDSIITNEAETEENPQRDPP 510
                 5******************83346788776666655...89999************************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.46
# Mc/sec: 2803.33
//
Query:       MMETSP1061-20121228|2393_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|2394_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 323.97
//
Query:       MMETSP1061-20121228|2391_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 2285.30
//
Query:       MMETSP1061-20121228|2399_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 272.49
//
Query:       MMETSP1061-20121228|2392_1  [L=649]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   21.9   0.0       0.07    9.4   0.0    3.1  3  TIGR01048 lysA: diaminopimelate decarboxylase
     0.0042   14.0   0.0       0.93    6.3   0.0    2.7  3  TIGR03099 dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated


Domain annotation for each model (and alignments):
>> TIGR01048  lysA: diaminopimelate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   3.4e-05      0.07      51      98 ..     270     320 ..     245     329 .. 0.81
   2 !    1.6   0.0    0.0083        17     254     301 ..     474     519 ..     465     524 .. 0.75
   3 !    6.7   0.0   0.00022      0.46     331     374 ..     581     624 ..     572     627 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 3.4e-05
   TIGR01048  51 s.lvlYAvKAnsnlavlrllaeeGlgldvvsgGEleralaAgvk..aekiv 98 
                 s +++Y ++ n n  +l+ll+++G+gl v ++ +l+++ +A+ +   + +v
  MMETSP1061-20121228|2392_1 270 SvQMVYSARHNCNARLLQLLQRLGVGLRVATKYDLAAVREASGNreEDSMV 320
                 3499***********************************999883344455 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.0083
   TIGR01048 254 yaeklleklekeaelglklklilEpGRslvanagvlltrVesvKeves 301
                 + + +le +e+  + ++   ++++  R l+ana+ l +r+  vK++++
  MMETSP1061-20121228|2392_1 474 IDSSVLEWIER--HRKVCSWITIDVSRILMANAAALCARIIGVKSSDT 519
                 55555555555..355567789999*******************9876 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.00022
   TIGR01048 331 rleeeetetvdvvGplCEsgDvlakdrelpeveeGdllavasaG 374
                 ++e+++ ++++v Gp C+  D +  +++lp+  ++d l+ a+ G
  MMETSP1061-20121228|2392_1 581 ETEQKTLVNTTVWGPTCDGLDKVCSKVALPRLSRDDWLVFADLG 624
                 5678888999*****************************99877 PP

>> TIGR03099  dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0019       3.8      49      91 ..     270     312 ..     231     320 .. 0.81
   2 ?   -1.4   0.0     0.098     2e+02     269     299 ..     490     520 ..     464     523 .. 0.76
   3 !    6.3   0.0   0.00045      0.93     335     374 ..     583     622 ..     541     635 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0019
   TIGR03099  49 elalhyalkanPmaaLlahlaelvdGlDvasagelklaldtGv 91 
                 ++++ y+ + n +a Ll+ l++l  Gl va++ +l++++++  
  MMETSP1061-20121228|2392_1 270 SVQMVYSARHNCNARLLQLLQRLGVGLRVATKYDLAAVREASG 312
                 68999*******************************9998754 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.098
   TIGR03099 269 velileLGryLvaeaGiyvckvvdrkvsrge 299
                 + +++++ r L+a+a    ++++  k s  +
  MMETSP1061-20121228|2392_1 490 SWITIDVSRILMANAAALCARIIGVKSSDTH 520
                 358999*******************999766 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.00045
   TIGR03099 335 keaereevsivGpLCtPLDlladkvelpkaeaGDlvvifq 374
                 ++++  ++++ Gp C  LD +  kv+lp+ +  D +v+  
  MMETSP1061-20121228|2392_1 583 EQKTLVNTTVWGPTCDGLDKVCSKVALPRLSRDDWLVFAD 622
                 456677899*************************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1992.11
//
Query:       MMETSP1061-20121228|2396_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1975.84
//
Query:       MMETSP1061-20121228|2403_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   14.6   0.0      0.088   10.5   0.0    2.5  3  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
  ------ inclusion threshold ------
      0.015   13.1   0.0       0.24    9.2   0.0    2.5  3  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB


Domain annotation for each model (and alignments):
>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.98     2e+03      53      90 ..      95     134 ..      83     143 .. 0.66
   2 ?    0.9   0.0     0.035        73       1      14 [.     144     157 ..     144     169 .. 0.81
   3 !   10.5   0.0   4.3e-05     0.088      18      71 ..     212     265 ..     207     295 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.98
   TIGR01487  53 vligvsgavvaEnGgvvlykk..edielankekeslldev 90 
                 + i++s+av+ E+   +   +  ++ e+ n++++s  ++ 
  MMETSP1061-20121228|2403_1  95 MAIRPSNAVINEDARTIPNTNsvNENEIENENNNSNNNNN 134
                 5678888888888777765554556666666666655555 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.035
   TIGR01487   1 iklvavDiDgTltd 14 
                 i+lv +D+DgTl +
  MMETSP1061-20121228|2403_1 144 IRLVFSDVDGTLVH 157
                 689*********87 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 4.3e-05
   TIGR01487  18 lislraieairklekkGikvvlvtGnevkfvealavligvsgavvaEnGgvvly 71 
                 +is r +e  r++++   k+v+v+G  +  + +   ++   +a+  EnGg ++ 
  MMETSP1061-20121228|2403_1 212 IISIRTLELAREIRRTNTKLVVVSGMRTSTLLQRLPYLPKADAYCSENGGRIFR 265
                 69999********************77766666667778888********9874 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00012      0.24       1      20 [.     146     165 ..     146     176 .. 0.81
   2 ?   -2.6   0.0      0.47   9.7e+02      26      56 ..     222     251 ..     211     280 .. 0.62
   3 ?    0.6   0.0     0.051     1e+02     163     214 ..     449     508 ..     383     514 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00012
   TIGR01484   1 llffDlDgTLldpklelsee 20 
                 l+f+D+DgTL++ + +++e 
  MMETSP1061-20121228|2403_1 146 LVFSDVDGTLVHYPSSIPES 165
                 79**********99666665 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.47
   TIGR01484  26 erlrealgvkvvivTGRslaeikellkqlnl 56 
                  ++r++ + k+v+v+G   + ++  l+ l  
  MMETSP1061-20121228|2403_1 222 REIRRT-NTKLVVVSGMRTSTLLQRLPYLPK 251
                 456666.588899988655555555554444 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.051
   TIGR01484 163 alqkegetllevlpagvdKgkalqalleeln........lkkeeilafGDsgNDeemlev 214
                 +++ +g+  +  + +g dK ++      ++         +++++ + + D++ND+e+  +
  MMETSP1061-20121228|2403_1 449 EWFCNGNGTNNGTGNGTDKHYGDIESDTKTSapenlsarFCRNHAVLLCDDDNDLELAAA 508
                 555555555555555555555533333333334555566788888888899999888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.10s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2757.11
//
Query:       MMETSP1061-20121228|2404_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 2017.55
//
Query:       MMETSP1061-20121228|2405_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1975.71
//
Query:       MMETSP1061-20121228|2406_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 646.05
//
Query:       MMETSP1061-20121228|2411_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.22s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1011.92
//
Query:       MMETSP1061-20121228|2416_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-06   23.2   0.0    7.8e-06   23.2   0.0    1.0  1  TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase


Domain annotation for each model (and alignments):
>> TIGR00173  menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.9e-09   7.8e-06     123     172 ..       2      50 ..       1      62 [. 0.86

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.9e-09
   TIGR00173 123 raslelpepeaeeeleylrstveealaealkappgpvHlNvpfrePlvpe 172
                 r++ ++  p+++ + + +++ +++a++ + +   gpvHlNv fre l+p+
  MMETSP1061-20121228|2416_1   2 RWFRDILPPHDDVPISVALADAAQAVSLSRR-CMGPVHLNVQFRENLAPD 50 
                 7999999999999999999999999999877.8***************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 346.47
//
Query:       MMETSP1061-20121228|2414_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1842.96
//
Query:       MMETSP1061-20121228|2410_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.09s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 2292.70
//
Query:       MMETSP1061-20121228|2419_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1219.58
//
Query:       MMETSP1061-20121228|2417_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 2387.28
//
Query:       MMETSP1061-20121228|2418_1  [L=1270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.21s 00:00:00.75 Elapsed: 00:00:00.54
# Mc/sec: 3104.19
//
Query:       MMETSP1061-20121228|2415_1  [L=740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 2382.24
//
Query:       MMETSP1061-20121228|2420_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   15.2   0.6     0.0091   14.2   0.4    1.5  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
  ------ inclusion threshold ------
      0.012   13.9   1.5      0.012   13.9   1.0    2.3  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.4   4.4e-06    0.0091       3      39 ..      37      72 ..      34      83 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4.4e-06
   TIGR02811  3 deqkadlsRRdLLkglavgaaagavaaatgrvasasa 39
                + ++a   RR+++ + +   aa+a+a atg+++  ++
  MMETSP1061-20121228|2420_1 37 E-EHASDDRRSFVTKTGSTVAAAALASATGTLGVPTQ 72
                3.666778**********************9985444 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.6       1.1   2.2e+03      22      29 .]      11      18 ..       5      20 .. 0.52
   2 ?   13.9   1.0   5.8e-06     0.012       2      22 ..      43      67 ..      43      76 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.1
   TIGR01409 22 llpsparA 29
                +l++ a+A
  MMETSP1061-20121228|2420_1 11 FLVGSASA 18
                34555544 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 5.8e-06
   TIGR01409  2 sRRdFLkaaaaagaaaglgl....l 22
                +RR+F+++++ ++aaa+l++    l
  MMETSP1061-20121228|2420_1 43 DRRSFVTKTGSTVAAAALASatgtL 67
                5********8888888877654552 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1674.61
//
Query:       MMETSP1061-20121228|2422_1  [L=1261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   12.9   0.1      0.011   12.2   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   2.6e-06     0.011     281     302 ..    1112    1133 ..    1095    1138 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.6e-06
   TIGR01982  281 DlHpGNilvakdgkiialDfGi 302 
                  D H+GNil+++ g+ii +DfG 
  MMETSP1061-20121228|2422_1 1112 DRHNGNILLDNRGHIIHIDFGF 1133
                  99*******************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.36s 00:00:00.70 Elapsed: 00:00:00.76
# Mc/sec: 2189.98
//
Query:       MMETSP1061-20121228|2426_1  [L=1064]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       348  (0.0848367); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.36s 00:00:00.64 Elapsed: 00:00:00.63
# Mc/sec: 2229.15
//
Query:       MMETSP1061-20121228|2429_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 617.95
//
Query:       MMETSP1061-20121228|2435_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 311.12
//
Query:       MMETSP1061-20121228|2431_1  [L=789]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.12s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 2603.48
//
Query:       MMETSP1061-20121228|2439_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 300.39
//
Query:       MMETSP1061-20121228|2438_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.49
# Mc/sec: 1605.42
//
Query:       MMETSP1061-20121228|2444_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 1589.74
//
Query:       MMETSP1061-20121228|2446_1  [L=821]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.3e-211  700.4   0.0     5e-211  700.2   0.0    1.0  1  TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit
    8.6e-91  303.1   0.0    1.3e-90  302.6   0.0    1.1  1  TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
    1.3e-63  213.2   0.0    4.4e-54  181.7   0.0    3.0  2  TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit
    6.4e-60  201.0   0.2    5.4e-24   82.4   0.0    3.6  3  TIGR02510 NrdE-prime: ribonucleoside-diphosphate reductase, alpha chain
    0.00023   17.3   0.0    0.00075   15.6   0.0    1.7  2  TIGR02505 RTPR: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent


Domain annotation for each model (and alignments):
>> TIGR02506  NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  700.2   0.0  6.1e-214    5e-211       1     616 []     145     747 ..     145     747 .. 0.98

  Alignments for each domain:
  == domain 1    score: 700.2 bits;  conditional E-value: 6.1e-214
   TIGR02506   1 yaGlkellnryllrkaakkallelpqeaymrvalalasleeketaladaikfyellsrlkislatpvlanagtkksqlaSCfLleveddelesiskaikevaklskkggGiGlnlsklratgskirgsenkskgiipvlklldssveavnqg.gkRpgavavylevwHpdieefLelkknngeeerraknlfiglvipdlfmkrveedkdwtLfspqdvpeleelygeefeeeYerlekekeakkkikvsarelmkkilksavetGepYilfkdavN.khnpnklkgeaikmSNLCtEivqptdeeeevavCnLasvnlanfvlekee.....fdfekleeavqlavraldnvidlqnyptaeaaksnkrrrsiGiGvmgladvlaklglsYeseearalnkrifeaiyyaaikaSveLAkekGafegFeeskyakGllhidtwektieeleeakteedWeaLrekikeyGlrnsqllAlaPtassSqltgvtesiePvfsniftkktkkgeflkvNktLvkeleelglweaervgdiveavgsiqpieaiseelkekyktafeldqealiklaaarqkfvdqsiSlnlfleeekevtakkllkllllAwkkGlKT.mYYlrvk 616
                 y+G+k+l+++yll+ +   ++ e+pq ++mrva++++ +     +++++ ++ye ls++ +++atp+l+nagt+++q++SCfLl++++d+++ i++++k++a +sk +gGiGl   ++ra  s irg++++s+gi+p+l+++++++++v+qg gkR+g++a+yle+wH+d++ fL+l+kn+g+e +ra++lf++l+ipdlfm+rv+++ +wtL++p+++p+l + +g ef+e Ye++eke + +++  ++a++l+++il s+vetG+pY+l+kd++N k+n+++l  ++i+ SNLCtEivq+t+++ e+avCnLas++l+++v++  +     fdfekl++++ +++r+l++vid ++yp+ +a+ sn+++r+iG+Gv+glad +a l+l+++s+ea +ln++ife+iy+ a +aS++LA+e+G +e++++s +++G+l++d w  t ++      + dW aL+ +i+e+Glrns l+A +Ptas++q+ g++es eP++sni++++ ++gef++vNk+L+++l +lg+w++++++ ++++ gs+q+ie+i+++l+++ykt +e++q+ +++laa+r +f++qs+Sln+ +++   ++ kkl++++++AwkkGlKT mYYlr++
  MMETSP1061-20121228|2446_1 145 YFGFKTLEKSYLLKLNG--KIAERPQCMLMRVAVGIHGN-----DIEQVLETYEGLSERYFTHATPTLFNAGTNNPQMSSCFLLTMKEDSIDGIYDTLKDCAVISKYAGGIGLATHNIRASKSYIRGTNGTSNGIVPMLRVFNNTARYVDQGgGKRKGSIAIYLEPWHADVFAFLDLRKNHGNEADRARDLFYALWIPDLFMERVKSNGTWTLMCPDECPGLPDCHGREFKELYEKYEKEGKGRET--IQAQQLWFAILDSQVETGTPYMLYKDHCNsKSNQQNL--GTIRSSNLCTEIVQYTSPK-ETAVCNLASISLSKLVRRVPNngplvFDFEKLRRVAMTLTRNLNRVIDRNFYPIPQARYSNMKHRPIGLGVQGLADTFAMLKLPFDSPEAAKLNRDIFETIYFGACTASCKLAEEEGHYESYPGSPVSQGKLQYDLWGVTPTN------RWDWPALKRDIAEHGLRNSLLVAPMPTASTAQILGNNESTEPFTSNIYNRRVLAGEFTIVNKHLLRDLTKLGIWNESIRNRLIADRGSVQKIEEIPKQLRDVYKTVWEIPQRIILDLAADRSPFICQSQSLNVHIAD---PSSKKLTSMHFYAWKKGLKTgMYYLRSR 747
                 79*********998884..599************88885.....5799**************************************9999*************************************************************999******************************************************************************************99..*****************************88888885..5*****************9.8*************998876689*******************************************************************************************************************75554......479**************************************************************************************************************************************...**************************96 PP

>> TIGR02504  NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.6   0.0   1.5e-93   1.3e-90       3     593 ..     149     740 ..     148     751 .. 0.89

  Alignments for each domain:
  == domain 1    score: 302.6 bits;  conditional E-value: 1.5e-93
   TIGR02504   3 kvlearyllkdedgeilespedlfrrvaealaaaeakeeseeleelaeefeellvelkfvpnsptlmnaagtelgqlsacfvlpveddles.IleaakeaaeifksGgGvGynfSelRpkgdvvrgtgGvaSGpvsfmrlfdsvtevvkqgg.kRRGAqmgilevdHPDieeFIeaKkkeeklaeaklqnfNiSVgvtdeFmeavekddeeyklenprtgeeeeelk..............vkvekevpareLwdkiveaAwksaePGllfldtiNrenpeakkallerinatNPCgEqpll....pyesCnLgsinLakfvkedad...aefdleelaeavelatrflDnvidlnkfpleeieeaakktRriGLGimgladlLiklgipYdSeeavelaeevmevlaeeaykaSaelAkerGafplyekskeeeakvlrkkkalpkeleelierkkleekaekygiRNaalttiAPTGtiSllagtssGiEPvFalvykrkvavggeellevneeveealrekglyekeeelvkevaeegmsveglpevpeelkkvfvtasdvspedHvrmqaavqkwvdsaiSKTiNlpsdatvedveavYllawklglKGi 593
                 k le+ yllk + g+i e p+ +  rva ++  ++ +        +  e +e l+e++f  ++ptl+n agt++ q+s+cf l++++d  + I++++k+ a i k  gG+G++  ++R++++++rgt+G++ G v  +r+f++++  v qgg kR+G   + le +H D+  F++ +k++++ a +  +   +   + d Fme v+++  +++l  p++       +               k +++++a++Lw +i ++  +++ P +l+ d+ N +++   ++ l++i+++N C E++ +    +  +CnL+si+L+k v++  +     fd+e+l++++ ++tr l+ vid n +p+++ +  + k R iGLG+ glad+ ++l++p+dS+ea +l + ++e+++  a +aS +lA+e G+++ y  s   + k+        +  +++ +  +l+++++++g+RN+ l++  PT ++  + g   + EP  + +y r+v  g  e+++vn+++ + l ++g ++  e + ++ ++ ++sv+ ++e+p++l++v+ t  ++ ++  ++  a   +++ ++ S  + +  d +  ++ ++ ++awk+glK  
  MMETSP1061-20121228|2446_1 149 KTLEKSYLLKLN-GKIAERPQCMLMRVAVGIHGNDIE--------QVLETYEGLSERYFTHATPTLFN-AGTNNPQMSSCFLLTMKEDSIDgIYDTLKDCAVISKYAGGIGLATHNIRASKSYIRGTNGTSNGIVPMLRVFNNTARYVDQGGgKRKGSIAIYLEPWHADVFAFLDLRKNHGNEA-DRARDLFYALWIPDLFMERVKSN-GTWTLMCPDECPGLPDCHgrefkelyekyekeGKGRETIQAQQLWFAILDSQVETGTPYMLYKDHCNSKSN---QQNLGTIRSSNLCTEIVQYtspkETAVCNLASISLSKLVRRVPNngpLVFDFEKLRRVAMTLTRNLNRVIDRNFYPIPQARYSNMKHRPIGLGVQGLADTFAMLKLPFDSPEAAKLNRDIFETIYFGACTASCKLAEEEGHYESYPGSPVSQGKLQYD-LWGVTPTNRWDW-PALKRDIAEHGLRNSLLVAPMPTASTAQILGNNESTEPFTSNIYNRRVLAG--EFTIVNKHLLRDLTKLGIWN--ESIRNRLIADRGSVQKIEEIPKQLRDVYKTVWEIPQRIILDLAADRSPFICQSQSLNVHIA-DPSSKKLTSMHFYAWKKGLKTG 740
                 568889988887.56****************999973........3678899999*************.9*************997655545***********************************************************99**************************99977.77788889**************6.66666666655444444455555566666555556789*****************************7775...3569***********998744335679************9876678889***************************************************************************************************7777766444.233344444444.367889********************************************9..8*****************99..679999999999****************************************999999875.67778999***********965 PP

>> TIGR04170  RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   0.0   5.4e-57   4.4e-54      47     597 ..     110     633 ..      79     642 .. 0.85
   2 !   24.3   0.0   2.2e-09   1.8e-06     615     684 ..     681     750 ..     670     759 .. 0.88

  Alignments for each domain:
  == domain 1    score: 181.7 bits;  conditional E-value: 5.4e-57
   TIGR04170  47 ekldylveenyyeeevlekyseeelkelfkeakakkfrfksflsaykfykdyalktndgkkyledyedrvalvaltladGdeekakdlvdeiieqryqPatPtflnaGkkrrGelvscfllrv.ednlesigrainsalqlskiGGGvalllsklreaGaaikkienaasGvvpvmklledafsyanql.GqrqGaGavylnifhpdilefldtkkenadekvrvktlslGvviPdkffelakenedlylfsPydve...keyGkplddidltekydelvaderirkkkinarelleklaelqlesGyPyimfedtvnkana..iegkikmsnlcseilqvseaslynddleedeigkdiscnlGslnivnvmespdfektvetavraltavsdesdiksvPsvkkgnseahaiGlGamnlhgylarekiaygseeavdftniyfmlvnyyalrrsneiakerGetfkdfeksdyasGeyfdkyvsqefaPktekvkelfegiaiPtaedwaelkdkveeeGlynqyrlavaPtgsisyindstssihPivekieerk 597
                  k   lv ++yye+ v+++  ++ l + ++  ++++f+++ +++     k+y lk n   k+ e+ +  ++ va+ +   d e+  +  + + e  +  atPt++naG ++  ++ scfll + ed+++ i  + + +  +sk  GG++l+  ++r+    i++ +++++G+vp++++++++ +y +q  G+r+G+ a+yl+ +h d+ +fld +k   +e  r + l   + iPd f+e  k n    l+ P +       +G++++     e y++  ++    ++ i+a++l   + + q+e+G Py++++d  n      + g i+ snlc+ei+q  ++ +     + ++i           n   v + +++++   t +r l  v d+ +   +P  + +n + + iGlG+ +l   +a  k+ ++s+ea  +    f ++ + a ++s ++a+e+G+ ++ +  s  ++G+   +y+                g++   + dw +lk +++e+Gl n+ + a  Pt s + i     s  P +++i +r+
  MMETSP1061-20121228|2446_1 110 GKQGPLVSKEYYET-VMKH--KDILDNAIN--HDNDFEYD-YFGFKTLEKSYLLKLNG--KIAERPQCMLMRVAVGIHGNDIEQVLETYEGLSERYFTHATPTLFNAGTNN-PQMSSCFLLTMkEDSIDGIYDTLKDCAVISKYAGGIGLATHNIRASKSYIRGTNGTSNGIVPMLRVFNNTARYVDQGgGKRKGSIAIYLEPWHADVFAFLDLRKNHGNEADRARDLFYALWIPDLFMERVKSNGTWTLMCPDECPglpDCHGREFK-----ELYEKYEKEG-KGRETIQAQQLWFAILDSQVETGTPYMLYKDHCNSKSNqqNLGTIRSSNLCTEIVQYTSPKETAV-CNLASISLSKLVRRVPNNGPLVFDFEKLRRVAMTLTRNLNRVIDR-NFYPIPQARYSNMKHRPIGLGVQGLADTFAMLKLPFDSPEAAKLNRDIFETIYFGACTASCKLAEEEGH-YESYPGSPVSQGKL--QYDLW--------------GVTPTNRWDWPALKRDIAEHGLRNSLLVAPMPTASTAQILGNNESTEPFTSNIYNRR 633
                 45555788888887.5443..333443333..44555554.5566667889****986..6899*9999999*****999************99999***********875.689******985799*************************************************************7368*************************************************************987511145555555.....5565554444.46789****************************965443688**************988765443.33333433333344445666799********************97.6899***************************************************************95.9*******999985..44433..............454445679*******************************************99886 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 2.2e-09
   TIGR04170 615 nleyykdayeidaekvidlyaaitkhvdqGlsltlflkdtattrdlnrlqiyafkkGikt.lyyirlkqla 684
                     yk  +ei ++ ++dl a    ++ q  sl +++ d  +++ l  ++ ya+kkG+kt +yy+r + +a
  MMETSP1061-20121228|2446_1 681 LRDVYKTVWEIPQRIILDLAADRSPFICQSQSLNVHIADP-SSKKLTSMHFYAWKKGLKTgMYYLRSRPKA 750
                 5578*********************************997.5688**************889****98655 PP

>> TIGR02510  NrdE-prime: ribonucleoside-diphosphate reductase, alpha chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.0   9.2e-18   7.6e-15      25     209 ..     150     344 ..     132     349 .. 0.80
   2 !   61.6   0.0   1.3e-20   1.1e-17     215     383 ..     387     558 ..     370     572 .. 0.80
   3 !   82.4   0.0   6.6e-27   5.4e-24     389     547 ..     596     752 ..     588     761 .. 0.93

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 9.2e-18
   TIGR02510  25 flrrgyllk..G...esveervreiaeraekldkvegfeerffeylarGkyslatPvfanfGldrGlPiscaG.syvedsvedileaqaevgmlaknGgGtssylGdvrPrGadis.dngesngayalaslfdkvinvvsqget.rrGefagyvdvehpdleellsiqlen....davqsllygvevgddwleklia 209
                  l ++yllk  G   e ++  + ++a  + + d+ + +e   +e l   +++ atP   n G++     sc+  +  eds+  i+++  + ++++k  gG  +   ++r   + i+ +ng+sng  ++ ++f++    v qg + r+G +a y++  h+d+  +l++ +++    d  + l+y++ + d ++e++++
  MMETSP1061-20121228|2446_1 150 TLEKSYLLKlnGkiaERPQCMLMRVAVGIHGNDIEQVLE--TYEGLSERYFTHATPTLFNAGTNNPQMSSCFLlTMKEDSIDGIYDTLKDCAVISKYAGGIGLATHNIRASKSYIRgTNGTSNGIVPMLRVFNNTARYVDQGGGkRKGSIAIYLEPWHADVFAFLDLRKNHgneaDRARDLFYALWIPDLFMERVKS 344
                 555666654212100223334555666665555544443..48999999*****************99***9637789*************************************8689******************9999876367*****************9988765222256789************99886 PP

  == domain 2    score: 61.6 bits;  conditional E-value: 1.3e-20
   TIGR02510 215 rarWakllksraevGipyllfrdnanekaPqvikdkGidirasnlcteialPsdeeesfvcilsslnvllyde........ikdtdavetlvrfldsvldefiekakglayleravrfaeraraiGlGvlGfhsylqsnrialesaeasllnaeiyktikeraeeasrelaerygep 383
                 + +W  +l+s++e+G py+l++d  n k+ q  +++G +ir+snlctei+  ++++e+ vc l+s+ +++           + d ++++ +   l   l+  i++  ++  + +a     ++r iGlGv G    + + +++++s+ea  ln +i++ti   a  as +lae+ g  
  MMETSP1061-20121228|2446_1 387 QQLWFAILDSQVETGTPYMLYKDHCNSKSNQ--QNLG-TIRSSNLCTEIVQYTSPKETAVCNLASISLSKLVRrvpnngplVFDFEKLRRVAMTLTRNLNRVIDR--NFYPIPQARYSNMKHRPIGLGVQGLADTFAMLKLPFDSPEAAKLNRDIFETIYFGACTASCKLAEEEGHY 558
                 568************************9987..6777.7***************************998764311111111234444444455555555555553..44456666555679**************************************************997765 PP

  == domain 3    score: 82.4 bits;  conditional E-value: 6.6e-27
   TIGR02510 389 kgrrnatllaiaPtkssalilGqvspsiePlvsnyfvqdsakakvvfknPvlekvlkekgkdeekvedeialhnGsvqhldfltdeeksvfktfaeisqmaiidlaaarqkhidqaqslnlvidadekeskdvnvlvveawkkglks.lyyqrseraaka 547
                 +g rn+ l+a  Pt s+a ilG+  +s eP++sn + +   +++++  n +l + l + g  +e + + ++   Gsvq ++ +  + ++v+kt+ ei q  i+dlaa r   i q+qsln+ i      sk+++ ++ +awkkglk+ +yy+rs+  a a
  MMETSP1061-20121228|2446_1 596 HGLRNSLLVAPMPTASTAQILGN-NESTEPFTSNIYNRRVLAGEFTIVNKHLLRDLTKLGIWNESIRNRLIADRGSVQKIEEIPKQLRDVYKTVWEIPQRIILDLAADRSPFICQSQSLNVHIAD--PSSKKLTSMHFYAWKKGLKTgMYYLRSRPKADA 752
                 689*******************8.6899********************************************************************************************99965..57788888999********659*****988877 PP

>> TIGR02505  RTPR: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.16   1.3e+02     216     255 ..     254     293 ..     250     300 .. 0.86
   2 !   15.6   0.0   9.1e-07   0.00075     334     453 ..     382     519 ..     366     527 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.16
   TIGR02505 216 dvRpaGeklkgfGgtasGpvklaklltevaeiLskkaggr 255
                 ++R+    ++g  gt++G v++  ++ + a+   +  g+r
  MMETSP1061-20121228|2446_1 254 NIRASKSYIRGTNGTSNGIVPMLRVFNNTARYVDQGGGKR 293
                 69999999*******************9999887776665 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 9.1e-07
   TIGR02505 334 eelkqerldlalsegkiengewlqt..ds..sledageaeevkgtNPCgEIll....ankepCNLaevnllaieedke.........vdlerafklaarsvarltfsal.edeksrevlaknrriGvsftGladflvl 453
                 e +++++l  a  + ++e g + +   d+  s +++++++ +   N C EI+     ++   CNLa + l +++               l r+    +r + r++  ++   ++ r +  k r iG+++ Glad +++
  MMETSP1061-20121228|2446_1 382 ETIQAQQLWFAILDSQVETGTPYMLykDHcnSKSNQQNLGTIRSSNLCTEIVQytspKETAVCNLASISLSKLVRRVPnngplvfdfEKLRRVAMTLTRNLNRVIDRNFyPIPQARYSNMKHRPIGLGVQGLADTFAM 519
                 4555556666666677777777664225522445556666699********75332256678*******9988765444569998877899999999*******99886268**********************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.53u 0.15s 00:00:00.68 Elapsed: 00:00:00.52
# Mc/sec: 2083.90
//
Query:       MMETSP1061-20121228|2449_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.50
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|2451_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 2370.92
//
Query:       MMETSP1061-20121228|2454_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 509.96
//
Query:       MMETSP1061-20121228|2452_1  [L=1070]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1070 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       421  (0.102633); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.21s 00:00:00.81 Elapsed: 00:00:00.71
# Mc/sec: 1989.13
//
Query:       MMETSP1061-20121228|2453_1  [L=976]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (976 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 3303.11
//
Query:       MMETSP1061-20121228|2456_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.82    7.4   8.5        1.2    6.9   5.9    1.2  1  TIGR03979 His_Ser_Rich: His-Xaa-Ser repeat protein HxsA


Domain annotation for each model (and alignments):
>> TIGR03979  His_Ser_Rich: His-Xaa-Ser repeat protein HxsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.9   0.00029       1.2      74     125 ..      76     124 ..      71     148 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00029
   TIGR03979  74 SgsGGgyvvrskdtstysapvpsksyspssgslvkslptttgvksqssksna 125
                  gsGGg+    +++st s p+  k+ ++  +++    +ttt+++s +s s +
  MMETSP1061-20121228|2456_1  76 GGSGGGSF---YEASTVSEPAQAKKTNTTGTATATTTTTTTTTSSDASPSAT 124
                 46777765...55677777766666666555555555555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 822.73
//
Query:       MMETSP1061-20121228|2455_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.56
# Mc/sec: 1843.22
//
Query:       MMETSP1061-20121228|2463_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-08   29.8   0.0    3.8e-06   23.8   0.0    2.1  2  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    0.00052   16.9   0.0      0.035   10.9   0.0    2.2  2  TIGR02143 trmA_only: tRNA (uracil-5-)-methyltransferase
  ------ inclusion threshold ------
      0.012   12.5   0.0      0.036   10.8   0.0    1.7  2  TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB


Domain annotation for each model (and alignments):
>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0026       3.6     296     315 ..      64      83 ..      23      93 .. 0.82
   2 !   23.8   0.0   2.8e-09   3.8e-06     340     426 ..     136     234 ..     127     240 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0026
   TIGR00479 296 kvvDaycGvGtftlplAkqa 315
                 + +++y GvGt++l lA+  
  MMETSP1061-20121228|2463_1  64 HCLELYGGVGTVGLNLADLF 83 
                 5789*************865 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 2.8e-09
   TIGR00479 340 ianveflageleevlpklskekisadkvllDPpRkGcaaevlreii..........klkpkrivYvsCnPatLarDlevLlke.G.YkiekvqvvDmFP 426
                    ++++ + + +++ +       a +v++DPpRkG +  v+++++          +++ ++++YvsC      rD ++L+++ G + ++  +   +FP
  MMETSP1061-20121228|2463_1 136 RSKITYVSKSATDMVRDRFASLCDASVVIVDPPRKGLDRPVVEALCgeyqhhkhhsQQQQQHLIYVSCGFDAFRRDYKALVEDsGrWILDCAEGHVLFP 234
                 5678999999999999999899999******************9986555554444567889*****************98761444444445555555 PP

>> TIGR02143  trmA_only: tRNA (uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.0    0.0039       5.4     197     221 ..      62      86 ..      40      91 .. 0.84
   2 !   10.9   0.0   2.6e-05     0.035     279     322 ..     160     215 ..     150     225 .. 0.66

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0039
   TIGR02143 197 kgdllelycGnGnfslalaekfekv 221
                  g  lely G G   l la+ f+ +
  MMETSP1061-20121228|2463_1  62 GGHCLELYGGVGTVGLNLADLFDSI 86 
                 4688***************999876 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 2.6e-05
   TIGR02143 279 fetifvdPPraGldketvk.lv...........kkyerilyiscnPetlkenleel 322
                  + ++vdPPr Gld+ +v+ l            ++ ++++y+sc  ++++ + + l
  MMETSP1061-20121228|2463_1 160 ASVVIVDPPRKGLDRPVVEaLCgeyqhhkhhsqQQQQHLIYVSCGFDAFRRDYKAL 215
                 5679**********999873442222211111133345777777777666666655 PP

>> TIGR02085  meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.083   1.1e+02     214     252 ..      42      80 ..      27     109 .. 0.77
   2 ?   10.8   0.0   2.7e-05     0.036     287     346 ..     146     215 ..     122     247 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.083
   TIGR02085 214 npkvaaqlyatarqwvrelevkelwdlfcGvGGfglhca 252
                 +p+ aa   a++ +   + +  +  +l+ GvG  gl  a
  MMETSP1061-20121228|2463_1  42 DPAAAAAAAAASTNTKTHRPGGHCLELYGGVGTVGLNLA 80 
                 56666665555555555667789999******9999877 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.7e-05
   TIGR02085 287 aldsakfaeakadvpelvlvnpprrGiGkelsdyl..........eqlapkfilysscnaqtmakdiael 346
                 a d  +   a      +v+v+ppr+G+ +++ + l          +q + ++++y sc   ++ +d + l
  MMETSP1061-20121228|2463_1 146 ATDMVRDRFASLCDASVVIVDPPRKGLDRPVVEALcgeyqhhkhhSQQQQQHLIYVSCGFDAFRRDYKAL 215
                 44444444444455679***********998776533333333336778899999999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1428.93
//
Query:       MMETSP1061-20121228|2471_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 400.52
//
Query:       MMETSP1061-20121228|2474_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 345.90
//
Query:       MMETSP1061-20121228|2477_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|2479_1  [L=765]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.17s 00:00:00.57 Elapsed: 00:00:00.57
# Mc/sec: 1740.89
//
Query:       MMETSP1061-20121228|2484_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1061-20121228|2483_1  [L=1529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.18s 00:00:00.94 Elapsed: 00:00:00.63
# Mc/sec: 3203.35
//
Query:       MMETSP1061-20121228|2488_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 645.80
//
Query:       MMETSP1061-20121228|2487_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 1039.41
//
Query:       MMETSP1061-20121228|2491_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-62  209.2   0.0    4.1e-62  208.5   0.0    1.2  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    2.9e-60  202.2   0.1      1e-47  160.8   0.0    2.0  2  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    3.7e-58  195.5   0.0      6e-57  191.5   0.0    2.0  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
      2e-48  163.4   0.0    4.9e-38  129.2   0.0    2.4  2  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.5   0.0     4e-65   4.1e-62      15     437 .]     142     612 ..     134     612 .. 0.82

  Alignments for each domain:
  == domain 1    score: 208.5 bits;  conditional E-value: 4e-65
   TIGR01349  15 nlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknyklessasapkpkekae...............................qsaeesaesakseasaekakessseaeaskkeskdrifasPlAkklAkekgidLsavkGsGPngRivkkDiesfvpkkkesaqe.aaaaktpatk.........kaaapvet.geyedvplsniRkviakRLleskqtiPhyylsvevnvdkllklrkelnaaaeervklsvnDlivkAvalAlrevPevnsswtd..dvirkyknvDisvAvaipaGlitPivrnaeakgleeisnevkelakkA..re...nkLkpeefqgGtftisnlGml..gikqFaaiinpPqaailavgasedka.vvknkeekglevasilsvtlsvDHRviDGavgAeflkelkkllenPielll 437
                 +l +w + eG  ++e d ++e++ DkAt++++s  eg + k+  ++    ++v+++i  + e+++ ++d +++ kle+   +p +++++                                q +e+++e ++++  +++ +  +  ++ +  +++ ++++sP+ +klA+++ +dLsa++G+GP+gRi+k Di ++ +++++s +  ++a+++ +++         ++ +  ++ +e   vpl    +++a+ +++s   iPh   s e+n+++ +  r ++++++ e+ kl    l +kA  +Al + P  nss+ d  +    +k  +i++A+ +p+Gli P++++++ k l ei++e+k l +    +e   + L  ++ qg tft+sn+G +  g      i+ p q ai a+g  ++ + +v+n++ + +e a i++v  ++DHRv+DGa+ A+f ++ k+++e+Pi+lll
  MMETSP1061-20121228|2491_1 142 ELLRWFVTEGQMIREFDPVCEVQSDKATVEITSRYEGRVDKLAFQASGSMIRVGEPILWIREKNDGTNDDQQDEKLEQGNQQPMATSTEGnaiasgqvasvvepmtqssssrletlgeqqeQGQEHQHEHQHQHQHQHQHEPDTGASRFAPVATSSKVLTSPAVRKLARDHSLDLSALTGTGPSGRITKGDILEILKESPSSHSViSFAEEGNSSSnersspsigSTSELGQPlKEDIVVPLRGYNRIMADTMTASL-KIPHMVYSDEINLNRFV--RYKMEQQQTEQKKLIFLPLAIKAASKALEKYPWLNSSFDDekQEATLWKDHNIGIAMDTPRGLIVPVLKHCQDKTLPEIAQELKRLKDSVtcQEgpgGGLPASDLQGATFTLSNVGAIggGGTYMLPIVTPQQVAIGALGQIQRLPrFVTNTS-HEIEEAHICTVSWAADHRVVDGATVARFHQSWKEYMEDPIRLLL 612
                 6889******************************************999****************9***********998877666665578899**********************9876444444444445555555554555566677778889************************************999885444333344444444432333332222222211112334579999999***9998886.69*************96..55666667779****************************9777788899999*********************************98754113322257******************964456677899999********9887652666666.99****************************************97 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.2   2.1e-14   2.1e-11     102     275 ..      74     248 ..      19     257 .. 0.79
   2 !  160.8   0.0   9.9e-51     1e-47     240     587 .]     256     612 ..     231     612 .. 0.77

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 2.1e-14
   TIGR01348 102 dveaeqalisveadkaaqevqdafketvkageagaaadaakkeaaPaeaqasgvkevkvPdiGd.aekvevievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkv.GdkvktGdlilvlevegaapaaaeapakaeaaaaapaaeaeeaaaapaaakaeakapvda 275
                    ++++  s   ++   + +d ++e+  + + ++ + +   +aa a++ a++     + diG+ + +ve++  +v+ G  + +  ++ +++sdka++e+ +   G v++l+ +  G  +++G+ il ++ ++     +++++k e  ++ p a+ +e  a +++  a+   p+ +
  MMETSP1061-20121228|2491_1  74 SSSSSSSSFSLSQQRFRSALPDDYSESDYSLTDDSLTASSTGNAAFAAG-ATASTPFLLADIGEgIAEVELLRWFVTEGQMIREFDPVCEVQSDKATVEITSRYEGRVDKLAFQAsGSMIRVGEPILWIREKNDGTNDDQQDEKLEQGNQQPMATSTEGNAIASGQVASVVEPMTQ 248
                 3455666677777888888888888877766666666666666777777.45578999*****9999*********************************************9864899**********99999999999999999999999999998888777666665554443 PP

  == domain 2    score: 160.8 bits;  conditional E-value: 9.9e-51
   TIGR01348 240 apakaeaaaaapaaeaeeaaaapaaakaeakapvdantendakvdhaaPavrrlarelGvdlskvkgtgkkGrilredvqkfvkeavkraea.aaaaaaggipgllPlPkv.dfskfGevee....velsrikkisganlarnWvmiPhvtqfdkaditelealrkqqneeaakekegvkltvlaillkavaaalkklPkfnasldedgerlilkkyvniGvavdtPnGllvPvikdvdrkgivelarelsdlakkar.....dkkltademqGacftisslGgiG..gtaftPivnaPevai..lGvsksalePvWdgk.efePrlllPlslsydhrvidGadaarflkylselladirrlll 587
                 +  +++ + +  + e ++  +     + ++ a+  a+    +kv  ++Pavr+lar+  +dls++ gtg+ Gri++ d+ ++ ke+       + a  + +  +    P +   s  G+  +    v+l + ++i +  ++   ++iPh+   d+ ++  +  ++ +q+     + e+ kl  l++ +ka+++al+k P +n+s+d + ++ +l k  niG+a+dtP Gl+vPv+k  + k++ e+a+el  l +         + l a+++qGa+ft+s++G iG  gt + Piv   +vai  lG  + + + v +   e e   +  +s + dhrv+dGa  arf +   e ++d+ rlll
  MMETSP1061-20121228|2491_1 256 TLGEQQEQGQEHQHEHQHQHQHQHQHEPDTGASRFAPVATSSKV-LTSPAVRKLARDHSLDLSALTGTGPSGRITKGDILEILKESPSSHSViSFAEEGNSSSNERSSPSIgSTSELGQPLKedivVPLRGYNRIMADTMTA-SLKIPHMVYSDEINLNRFVRYKMEQQ-----QTEQKKLIFLPLAIKAASKALEKYPWLNSSFDDEKQEATLWKDHNIGIAMDTPRGLIVPVLKHCQDKTLPEIAQELKRLKDSVTcqegpGGGLPASDLQGATFTLSNVGAIGggGTYMLPIVTPQQVAIgaLGQIQRLPRFVTNTShEIEEAHICTVSWAADHRVVDGATVARFHQSWKEYMEDPIRLLL 612
                 33334444444444444444444445555555566677778888.8************************************999764444404444444556777788773568899855512224577888998888865.589*****999888777655554444.....667789***********************************************************************998764311111568*******************73258899*********96666666677778887679*************************************99986 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.5   0.0   5.9e-60     6e-57     112     570 ..     112     606 ..      78     608 .. 0.73

  Alignments for each domain:
  == domain 1    score: 191.5 bits;  conditional E-value: 5.9e-60
   TIGR02927 112 apaeaaaqaqgsgeatevempelGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspvaGtlleilaee.ddtvevGavlakiGd.dagaedepkeeekpe..............................kseakseekpeaaepkae.kkeepkpepkaeekapaakaatektaadssp.yvtplvrklakekGvdlssvkGtGvGGrirkqdvlaaaeaaeeake....aaaaeaaaaapaapaaakka..pepekaklrGttqkvnrirqitakktveslqisaqltqvhevdvtrvaalrarakaefaekeGvnltflpffvkavvealkahpnvnasyneetkevtyhdaehlgiavdtprGllspviknagdlslpglakaiadlaarar.....dnklkpdelsGgtftitniGs..eGalfdtpilvppqaailGtGaivkrprvikdedGnesiairsvvylpltydhrlvdGadagrflttikkrlee 570
                 + + +aa a g++++t+ ++ ++Ge ++e  + rw+ + G  +   +p+ ev +dk   ei s   G + ++  +    ++ vG  +  i + + g++d+ ++e+  e                               s ++ e   e  e+  e ++e+++ + ++++++p++ a+  ++ a ss    +p vrkla+++ +dls+++GtG  Gri k d+l   +++  ++     a   ++++ + ++p+  +++   +p k  +      +    +i+a+ +  sl+i   +    e+++ r +    r k e ++ e  +l flp+ +ka+ +al  +p +n+s+++e +e t ++  ++gia+dtprGl++pv+k  +d +lp++a+ ++ l +         + l   +l G+tft++n+G+  +G  +  pi++p q+ai  +G i++ pr ++  + ++ i   +++ ++ + dhr+vdGa  +rf  + k+ +e+
  MMETSP1061-20121228|2491_1 112 SSTGNAAFAAGATASTPFLLADIGEGIAEVELLRWFVTEGQMIREFDPVCEVQSDKATVEITSRYEGRVDKLAFQAsGSMIRVGEPILWIREkNDGTNDDQQDEK-LEqgnqqpmatstegnaiasgqvasvvepmtqSSSSRLETLGEQQEQGQEhQHEHQHQHQHQHQHEPDTGASRFAPVATSSKvLTSPAVRKLARDHSLDLSALTGTGPSGRITKGDILEILKESPSSHSvisfAEEGNSSSNERSSPSIGSTSelGQPLKEDIV---VPLRGYNRIMADTMTASLKIP-HMVYSDEINLNRFV----RYKMEQQQTEQKKLIFLPLAIKAASKALEKYPWLNSSFDDEKQEATLWKDHNIGIAMDTPRGLIVPVLKHCQDKTLPEIAQELKRLKDSVTcqegpGGGLPASDLQGATFTLSNVGAigGGGTYMLPIVTPQQVAIGALGQIQRLPRFVT--NTSHEIEEAHICTVSWAADHRVVDGATVARFHQSWKEYMED 606
                 3445678899999*******************************************************9998876516789*********994444444444444.33366666677777777777766666655442111222222222221111011222222223333444444444444444440456********************************9887766555411112222333444444432222212222222222...222233457888888888886.45667888888887....567778888999********************************************************************9998887764311111467999**************743567899************************9..6677899999*********************9999998875 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.9   1.8e-13   1.9e-10       7     151 ..     133     282 ..     128     291 .. 0.63
   2 !  129.2   0.0   4.8e-41   4.9e-38      66     403 ..     249     613 ..     227     614 .. 0.68

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 1.8e-13
   TIGR01347   7 elaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellek.egdtvesgevlaeleessaaae..aasekskeekeekaaakaek.akeaaekkkalspaarkla.keegidleavektkktgrvtkedivkkeek 151
                 +++e ++e ++ +w    G+++++ + ++e+  Dk ++e++s  +G +++l ++  g+ + +ge +  ++e+++ ++  ++ ek ++ +++ +a+++e  a ++ + ++ ++p ++ +  + e++ +++ ++++++++ +++ +++++++
  MMETSP1061-20121228|2491_1 133 DIGEGIAEVELLRWFVTEGQMIREFDPVCEVQSDKATVEITSRYEGRVDKLAFQaSGSMIRVGEPILWIREKNDGTNddQQDEKLEQGNQQPMATSTEGnAIASGQVASVVEPMTQSSSsRLETLGEQQEQGQEHQHEHQHQHQHQHQHE 282
                 689***********************************************987527999***********96554440044444444444433333333144444554555554443220223333333333333333333333333333 PP

  == domain 2    score: 129.2 bits;  conditional E-value: 4.8e-41
   TIGR01347  66 esgevlaeleessaaaeaasekskeekeekaaakaek.....akeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaakaakaaena..............atrseeRvkmtRlrqriaerL.....leaknstamLttFnevdmsavmelR.kkykeefekkhgvklGFmsffvkavvealkefPevnaeidg..ddivykkylDisvavstdkGLvvPvvRdadalsladiekeikel.....akkaregklaledltgGtFtitnGGvfG..sllstPiinppqsaiLGmhaikeRPvavn...gkieirPmmYlaLsYDhRliDGkeavtFLvkikelledperllld 403
                  s   l +l e+++++++++++++++++++++++ ++     a+ a+++k  +spa+rkla+++++dl+a+++t+++gr+tk di +  ++  s+++  + +++  +++               +         + l++ i   L     + a   ta+L   + v   ++   R  +yk e +++ + kl F+ + +ka+ +al+++P +n++ d+  ++  + k  +i++a+ t++GL+vPv++ ++ ++l +i +e+k+l      + +  g l  +dl+g tFt++n G  G    +  Pi+ p q+ai  + +i++ P  v     +ie + +  ++ + DhR++DG     F ++ ke +edp rlll+
  MMETSP1061-20121228|2491_1 249 SSSSRLETLGEQQEQGQEHQHEHQHQHQHQHQHEPDTgasrfAPVATSSKVLTSPAVRKLARDHSLDLSALTGTGPSGRITKGDILEILKESPSSHSVISFAEEG-NSSSnersspsigstselG---------QPLKEDIVVPLrgynrIMADTMTASLKIPHMVYSDEINLNRfVRYKMEQQQTEQKKLIFLPLAIKAASKALEKYPWLNSSFDDekQEATLWKDHNIGIAMDTPRGLIVPVLKHCQDKTLPEIAQELKRLkdsvtCQEGPGGGLPASDLQGATFTLSNVGAIGggGTYMLPIVTPQQVAIGALGQIQRLPRFVTntsHEIEEAHICTVSWAADHRVVDGATVARFHQSWKEYMEDPIRLLLE 613
                 233334444443333333222222222222222222222233556666668899*******************************99888763333332222221.1122011232222222220.........33444444333111112244445555555555555544444236677777778899*************************99666788888999********************************994322223455678***************999862268999*****************9996554245789999*************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.45
# Mc/sec: 1803.85
//
Query:       MMETSP1061-20121228|2494_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-20   72.4   0.6    1.8e-09   35.5   0.1    2.8  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    3.2e-19   67.0   1.0    1.3e-10   39.4   0.3    3.1  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    4.7e-14   50.3   0.4    5.7e-08   30.7   0.2    2.5  2  TIGR01068 thioredoxin: thioredoxin
    0.00067   17.1   0.0     0.0014   16.1   0.0    1.5  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
    0.00093   16.7   0.0     0.0018   15.8   0.0    1.4  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.1   2.2e-12   1.8e-09       3      50 ..     158     205 ..     156     209 .. 0.82
   2 !   33.7   0.0   7.6e-12   6.3e-09      36      87 ..     216     269 ..     214     311 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 2.2e-12
   TIGR01130   3 vleltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkk 50 
                  ++l ke+++ + ++ e++ v F+A WC HCk LaP +ek Ae ++++
  MMETSP1061-20121228|2494_1 158 AISLDKESLERAKENFEFLFVDFFASWCSHCKDLAPTWEKLAEMMSDH 205
                 567888888888888899999999999999999999999999988876 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 7.6e-12
   TIGR01130  36 LaPeYekAAeelkkk..spkvklakvDateekelaqkygvsGyPtLkifrnges 87 
                 ++Pe +++ ee  k+   ++v++akvD+ e+ ++++++ ++ yPtL++f +g+ 
  MMETSP1061-20121228|2494_1 216 IKPEQARTVEEHMKDetRQQVVIAKVDCVEHDDVCDEHVIRAYPTLRLFVDGSP 269
                 67888877766443311468******************************9974 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.3   1.5e-13   1.3e-10      12      46 ..     171     205 ..     161     225 .. 0.83
   2 !   24.5   0.0   6.5e-09   5.3e-06      45      83 ..     231     269 ..     214     309 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 1.5e-13
   TIGR01126  12 denkdvlvefyaPWCGhCkklaPeyeklakelkke 46 
                 ++ + ++v+f+a WC hCk+laP++ekla+ ++++
  MMETSP1061-20121228|2494_1 171 ENFEFLFVDFFASWCSHCKDLAPTWEKLAEMMSDH 205
                 4668899***********************99875 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 6.5e-09
   TIGR01126  45 keeekvkiakvdataekelaskfkvsgfPtlkffkkgkk 83 
                 +++++v+iakvd+ ++++++++  ++++Ptl++f +g+ 
  MMETSP1061-20121228|2494_1 231 ETRQQVVIAKVDCVEHDDVCDEHVIRAYPTLRLFVDGSP 269
                 34578*****************************99984 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.2   6.9e-11   5.7e-08      11      59 ..     170     217 ..     161     226 .. 0.75
   2 !   17.5   0.0   9.2e-07   0.00075      37      82 ..     226     271 ..     220     285 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 6.9e-11
   TIGR01068  11 assdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqe 59 
                 +++ +   vDf+A+WC  Ck laP+ e+la e+ ++ ++  l+ de+ +
  MMETSP1061-20121228|2494_1 170 KENFEFLFVDFFASWCSHCKDLAPTWEKLA-EMMSDHHYDNLDDDETIK 217
                 44456889**********************.666677888888777655 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 9.2e-07
   TIGR01068  37 eelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevk 82 
                 e++++e++++v ++K++  e++++  +  ir+ Ptl lf +g+  k
  MMETSP1061-20121228|2494_1 226 EHMKDETRQQVVIAKVDCVEHDDVCDEHVIRAYPTLRLFVDGSPWK 271
                 6788999**********************************98766 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.7e-06    0.0014      20      90 ..     124     200 ..     111     214 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.7e-06
   TIGR00385  20 krnaegedikelesaligkpvpaekeaelke..kvqlltaevlkkgk....lvLlnvwasWCptCraehplLkelak 90 
                 krn++g + ++ +  l +  v ++  +  ++  ++  l++e l+++k       ++++asWC+ C++  p+ ++la+
  MMETSP1061-20121228|2494_1 124 KRNFQGRNRNQKDIDLYDETVTETIDELHEDgeDAISLDKESLERAKenfeFLFVDFFASWCSHCKDLAPTWEKLAE 200
                 5666666666666666666666554433332002233445555554411115679****************999996 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.2e-06    0.0018      23      78 ..     147     201 ..     137     208 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.2e-06
   TIGR02738  23 elkaLlaeeesltaaqdekpvgrkvlledyklvlfyqstCpyChqfapvLkqlsqq 78 
                  + +L ++ e+  +  +e+  +r+    ++ +v f+ s C++C+  ap+  +l++ 
  MMETSP1061-20121228|2494_1 147 TIDELHEDGEDAISLDKESL-ERAKENFEFLFVDFFASWCSHCKDLAPTWEKLAEM 201
                 45555555555555444444.5777777899999***************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1851.15
//
Query:       MMETSP1061-20121228|2502_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1061-20121228|2503_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.3    4.1  10.3        6.4    4.1   7.1    1.2  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   7.1    0.0016       6.4      28      70 ..       6      56 ..       1      83 [. 0.51

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0016
   TIGR03593 28 epqkppaaaqqaesqsaa.............aaaaasaaaaasadapsaaaaaaaa 70
                +++ +++++qq+++q+++             +  +++a+++a   a s++a+aaaa
  MMETSP1061-20121228|2503_1  6 AETDQAPQQQQQQQQQPPpprgcgndgrfqaT--TNAATESA---ALSQHATAAAA 56
                4444444444444444446899*987765321..22222222...22222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 553.10
//
Query:       MMETSP1061-20121228|2501_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 1023.92
//
Query:       MMETSP1061-20121228|2498_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   11.5  20.2      0.015   10.8  14.0    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.82    5.0  18.2        1.3    4.4  12.6    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8  14.0   7.4e-06     0.015     332     502 ..     142     313 ..     112     331 .. 0.37

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.4e-06
   TIGR02168 332 keeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleel.eeeleeleeeler.leealeeleeeleeaeqalqkaeeelaqlqarlesleslqen 502
                 +ee+ e+ +el+   +e + +++++ + +e +++ +++++sr+   +++++++ + + +l ++l++++  + + e +++qle+ ++rl+++ +  +++l+e++a  ++l+e+l  + + +l++ +++++  l+++ ++le+  +  +++ q++ e++  ++++l+ l++l+++
  MMETSP1061-20121228|2498_1 142 SEEDHEQEQELKPTDNEERLRIARI-KHIEDLNERIKAAKSRKLVERKAFRREDRLMLRLARELKTTSRSIAETEWKIKQLEQINDRLQENCNRSQEELNELRASGSTLREHLVAEnDIKLANEQSAHNFvLRNQSSQLEALKTGHQSRCQELCESVLDAHSELDRLRELLSE 313
                 1111111111111111111111111.112222333333333333333333333333333333333333333333333333333333333333333333333333333333333222022222222222220222222233333333333333333333333333333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  12.6   0.00061       1.3     249     383 ..     157     288 ..     116     335 .. 0.32

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.00061
   TIGR02169 249 eleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaae 383
                 + e+      ++ie+l++++++++  ++ +++k  +  +  +l++ ++l+ ++ +i+++e +i++ e+   +++e+ ++ ++e+++l++    l++++ +e+    kl +e ++++ +l++  ++le++++ ++ 
  MMETSP1061-20121228|2498_1 157 NEERLRIARIKHIEDLNERIKAAK-SRKLVERKAFRREDRLMLRLARELKTTSRSIAETEWKIKQLEQINDRLQENCNRSQEELNELRASGSTLREHLVAEN--DIKLANEQSAHNFVLRNQSSQLEALKTGHQS 288
                 111111111122222222222211.11222222222222222222222222222222222222222222222222222222222222222222222222211..1222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 1677.73
//
Query:       MMETSP1061-20121228|2506_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.26
# Mc/sec: 3061.13
//
Query:       MMETSP1061-20121228|2509_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1061-20121228|2504_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 1571.10
//
Query:       MMETSP1061-20121228|2512_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 622.99
//
Query:       MMETSP1061-20121228|2508_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1151.90
//
Query:       MMETSP1061-20121228|2510_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.51
# Mc/sec: 678.06
//
Query:       MMETSP1061-20121228|2513_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.11s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 1949.84
//
Query:       MMETSP1061-20121228|2515_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-51  171.5   1.3    3.4e-51  171.1   0.9    1.1  1  TIGR00187 ribE: riboflavin synthase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00187  ribE: riboflavin synthase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.1   0.9   8.4e-55   3.4e-51       1     195 [.      50     260 ..      50     268 .. 0.90

  Alignments for each domain:
  == domain 1    score: 171.1 bits;  conditional E-value: 8.4e-55
   TIGR00187   1 mFtGiveelakvksikekale..........isltvkladkiledlelGdSiAvnGvCLtvt..einkdsfsvdlspetlkrtnlgdlkegtaVniEralkadaklgGHfvsGHvdtvaeilkieeeeNavqlsfklrdse....llkyivekGsiavdGiSLtiaev..eeksftvslipetleetllkkkklgdkVNiEvDllgkavaktl 195
                 mFtGivee+++v +++++++            +ltv+    ++++  lG Si v GvCLt+t  + ++ +f+v+l petl +t   +l++g+aVn+Era +++++  GHfv+GHvd+++ i++++ ++ ++ +++++ d+e    +++y+v+kG+ia+dG+SLt+++v  e+++f   l+ +t++++++++k +g+kVN+EvD+lgk+ +  +
  MMETSP1061-20121228|2515_1  50 MFTGIVEEMGTVVKMEDRNDMtlwdgsigmgTELTVRGD-VVMDGAYLGCSICVSGVCLTATvlDDAQGTFTVGLAPETLDKTYFRSLQTGQAVNLERASEIGGRNSGHFVQGHVDGTGTIVDKRIDGDSLRITVQV-DEEfadnIVRYVVPKGFIAIDGTSLTVVDVnvEQRTFGFMLVEYTQKKIIIPQKAIGEKVNLEVDVLGKYSETAM 260
                 9**************999998999999996555555554.7788899************87722567788*******************************************************************.666677799******************98622677899*******************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.59
# Mc/sec: 876.94
//
Query:       MMETSP1061-20121228|2517_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 567.55
//
Query:       MMETSP1061-20121228|2520_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1935.84
//
Query:       MMETSP1061-20121228|2518_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   12.9   0.0      0.015   12.0   0.0    1.4  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.009   12.7   0.0      0.015   12.0   0.0    1.3  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
  ------ inclusion threshold ------
        6.9    2.8  20.3       0.56    6.4   6.2    2.2  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   1.1e-05     0.015       2      57 ..      78     136 ..      77     149 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.1e-05
   TIGR01984   2 viivGgglvGlslAlaLsrks....klkialieaksaeaa.kssfdarslalsagskqile 57 
                 v+ivG+g +Gl+lA+ L+rks    +   +   +++++ + k++   +s + s+ s+  ++
  MMETSP1061-20121228|2518_1  78 VAIVGAGFAGLVLANFLERKSrlgsD--SKAQTQTQTQTHtKTETQSQSQSQSQSSCWEYT 136
                 89*******************66432..333333333333356667777777777776655 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   1.1e-05     0.015       2      48 ..      78     126 ..      77     143 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.1e-05
   TIGR01988   2 ivIvGgGlvGlalAlaLassa....dlkvalveakaaek..akspafdnRvsA 48 
                 ++IvG+G +Gl+lA  L++++    d      +++++++  ++++ +++++ +
  MMETSP1061-20121228|2518_1  78 VAIVGAGFAGLVLANFLERKSrlgsD----SKAQTQTQTqtHTKTETQSQSQS 126
                 89****************99955331....22222222211333333444444 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   6.2   0.00041      0.56     331     429 ..      18     121 ..       2     149 .. 0.47
   2 ?    2.0   2.4    0.0085        12     335     428 ..     197     285 ..     156     298 .. 0.44

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00041
   TIGR02442 331 eeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavska......rargasGrrsktrsdkrgryvkaernr 429
                 +++++d  k+d++ +++++++kk++e+++++++e++++e+e++++++ +++ ++l+ +g  +++    ++        +++++ G  sk++++++ ++  +++++
  MMETSP1061-20121228|2518_1  18 NSPPDDTPKNDDK-NNNSSDNKKKNENNNENNNENNNNENENEDHRSCTTSPRSLSFTGLRVAIVGAGFAGLvlanflERKSRLGSDSKAQTQTQTQTHTKTETQ 121
                 2222222222222.3333333333333444444444444444444443333333333333333222222211122233578888888888885554444444333 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.0085
   TIGR02442 335 pdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrv....kllavskarargasGrrsktrsdkrgryvkaern 428
                 p +++++++   +++++++q++++ +k++ ++ed  +  + e+       le   k + v    ++++  ++++ +++G r   +s++r+r++  +++
  MMETSP1061-20121228|2518_1 197 PCAQPPQHQ---HQHQHQHQHQHQHQKPSTTSEDCYSVVSRESF------LELLRKNVTVrscsRVVEIIQEKNDHQTGDRGSDASTNRSRFTVVTQT 285
                 222222222...11111122222233333333333333333333......222222222200113333444456777787777777666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.45
# Mc/sec: 1375.62
//
Query:       MMETSP1061-20121228|2523_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 910.72
//
Query:       MMETSP1061-20121228|2524_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 459.32
//
Query:       MMETSP1061-20121228|2521_1  [L=1328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-26   88.9  32.8    2.6e-10   36.7   0.7    6.7  7  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    1.1e-12   45.9  25.4      0.007   13.8   0.0    7.9  8  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    1.4e-09   35.6   8.6    0.00036   18.1   0.0    5.8  6  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   7.6e-06      0.01     142     227 ..     154     239 ..      99     246 .. 0.79
   2 !   11.5   0.1   7.8e-06     0.011     131     176 ..     247     290 ..     236     325 .. 0.81
   3 !   36.7   0.7   1.9e-13   2.6e-10     101     242 ..     408     551 ..     402     607 .. 0.81
   4 !   24.7   0.0     8e-10   1.1e-06     496     621 ..     764     891 ..     754     898 .. 0.89
   5 !   19.5   0.2     3e-08     4e-05     455     531 ..     903     980 ..     895     995 .. 0.85
   6 ?    1.0   0.2     0.011        15     613     672 ..    1041    1101 ..    1017    1116 .. 0.76
   7 ?   -6.4   7.3         2   2.7e+03     589     675 ..    1151    1239 ..    1071    1251 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.6e-06
   TIGR02917 142 eeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnai 227
                 ++A + + +  + ++ ++   +g+  l l++++l++ar + d+ L +     +All ++ + + ++++ eA   y +ai+l p+++
  MMETSP1061-20121228|2521_1 154 AKADNRFTTSSKVDNLFPMTWMGKGMLNLQAKRLEQARFFFDTTLRECGRVLPALLGLAAVCYLEEKFGEAQTLYGEAIRLYPQKS 239
                 56777777777777777777777888888888888888888888888888888888888888888888888888888888777765 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 7.8e-06
   TIGR02917 131 rglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkld 176
                  glA  +lg+ ++A+++++ Al  + ++ ea++g+A+l + +   d
  MMETSP1061-20121228|2521_1 247 FGLACYKLGQVDRAKAAFKRALDMDGENVEAMVGAAVLDMMNL--D 290
                 5899999******************************998753..3 PP

  == domain 3    score: 36.7 bits;  conditional E-value: 1.9e-13
   TIGR02917 101 llqgkfqkvldelekkssld..deeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssg.nieeAlaayrkaielkpnaiaallalatilleege 242
                 + ++ +++v++++++++     +e +ae l  ++  +   g++++A k +    + +p+ + a++glAq+++ +++++ a a ++ vL ++ +++dAl+ +g l+  +g + ++ la +rkai l+p ++   + +a + l+++e
  MMETSP1061-20121228|2521_1 408 VWKKDYDRVIALAKGAYNSTtvQEIQAESLFFLARVYHVRGMMDDAGKVYDRSCKLNPNLTPARFGLAQVLIYQEQYEPAAAHLQLVLGTSGNATDALATLGLLEVRTGrKTQQGLAHLRKAIDLDPLDPDLIFLEALA-LQQNE 551
                 56678899999998877443225678888999999999*******************************************************************988736799**************99876666655.44443 PP

  == domain 4    score: 24.7 bits;  conditional E-value: 8e-10
   TIGR02917 496 pdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspellell..graqlaakdlkkav 621
                 p  ++ ++nLArl++ +++  +A++  +++l+++p  ++  l La +a   g  +e +++l+ aae  p + e   + ++ +ls  + + a +i + ++  + +++e+++ll  g+++ a+ d  k  
  MMETSP1061-20121228|2521_1 764 PLAISIAFNLARLHETAGRNLAAIELHKAILKRNPAYVNSYLRLACIAIDCGALNECAGWLKIAAETAPGNPEVLTLIGNLHLSLCDWQPAQQIFDGLLGKKIANVEAYALLslGNIYFANLDIPKRY 891
                 55566789*******************************************************************************************99999999998853377888877766555 PP

  == domain 5    score: 19.5 bits;  conditional E-value: 3e-08
   TIGR02917 455 kklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffp.AlanLArldlqekniddAkqrfekvlaidpk 531
                 k+ ++k ++na   n lg ++  k++l kA+e f+  +++  d+++ A  nLA++ l++k+ ++A q +++ l++  +
  MMETSP1061-20121228|2521_1 903 KRILTKDNANAYAANGLGTVIAEKGELFKAKEVFNRVREVTGDSISdAHLNLAHIYLAQKKHPEALQLYQSYLKRTEE 980
                 67788889999999999***********************9999864889********************99988766 PP

  == domain 6    score: 1.0 bits;  conditional E-value: 0.011
   TIGR02917  613 aakdlkkavesfkk.llelqpdsalalllladvyavaknkakAltslkkaLelkpdnteaq 672 
                  +++++k+++ +++  + +lq ++ + ++l+ ++ ++ak++++Al+ l+ +Le  +  ++ +
  MMETSP1061-20121228|2521_1 1041 NTSESKNGLLTYNLcMTKLQAANCVLQKLTRNIRRTAKEVEEALKGLQHSLETVETILQRK 1101
                  467778888888852568999999999************************9877766555 PP

  == domain 7    score: -6.4 bits;  conditional E-value: 2
   TIGR02917  589 ileeaadlapdspellellgraqlaakdlkkavesfkkllelqp..dsalalllladvyavaknkakAltslkkaLelkpdnteaqlll 675 
                  ++ ea   +++ ++ l+++ ++ +++   + a+e  +k++ l +  ++ +a +++a+ ++++++++ A   +  +++l++d  e q+ +
  MMETSP1061-20121228|2521_1 1151 MASEAKREEQKLQKELKMKEETKKQEARDRRAREKMRKVEDLRSgwEHEKAAAKAAAEKRSQNKAPPANDFIDDSMQLEEDDNEQQQQQ 1239
                  33344444444455688999999999999***********9998668999*******************************88888765 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0021       2.9     137     202 ..     173     238 ..     153     241 .. 0.88
   2 !   13.8   0.0   5.1e-06     0.007     115     181 ..     221     287 ..     218     301 .. 0.75
   3 !   12.2   0.0   1.6e-05     0.021     113     220 ..     411     519 ..     409     522 .. 0.84
   4 !   13.2   0.1   7.5e-06      0.01      47     142 ..     519     623 ..     515     625 .. 0.83
   5 !    3.2   0.0    0.0088        12     147     211 ..     779     843 ..     766     867 .. 0.64
   6 !   13.1   0.1   8.4e-06     0.012     139     201 ..     917     980 ..     879     996 .. 0.76
   7 ?    0.4   0.1     0.064        88     114     171 ..    1026    1082 ..    1023    1098 .. 0.75
   8 ?   -6.6   3.7         3   4.1e+03     160     224 ..    1144    1210 ..    1123    1214 .. 0.55

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0021
   TIGR02521 137 syeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqt 202
                 ++  +g+  l+a++ e+a+  +   l+   +  ++ll la + + + +  eA+ l+    ++++q+
  MMETSP1061-20121228|2521_1 173 TWMGKGMLNLQAKRLEQARFFFDTTLRECGRVLPALLGLAAVCYLEEKFGEAQTLYGEAIRLYPQK 238
                 678899***********************************************9998777776665 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 5.1e-06
   TIGR02521 115 yeeAeqqfeaAiedpkYeqparsyeNa..glcalkagdtekaekyltralkidpkrpesllelaelklk 181
                 + eA++ + +Ai+   Y+q++ s + +  gl  +k+g++++a+++++ral++d ++ e++   a l++ 
  MMETSP1061-20121228|2521_1 221 FGEAQTLYGEAIR--LYPQKSGSATRVgfGLACYKLGQVDRAKAAFKRALDMDGENVEAMVGAAVLDMM 287
                 5567777777775..566666666654116788999999999999999999999999999988887775 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 1.6e-05
   TIGR02521 113 kkyeeAeqqfeaAiedpkYeq.parsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaa 220
                 k+y+  ++  + A+++ ++++ +a+s+  ++ ++   g ++ a k   r+ k++p+  ++   la++ + + qy  A a l+ +  t++++ ++L+    ++ ++g+++
  MMETSP1061-20121228|2521_1 411 KDYDRVIALAKGAYNSTTVQEiQAESLFFLARVYHVRGMMDDAGKVYDRSCKLNPNLTPARFGLAQVLIYQEQYEPAAAHLQLVLGTSGNATDALATLGLLEVRTGRKT 519
                 5666666777778888886653678888899999999***************************************************999999976656666666655 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 7.5e-06
   TIGR02521  47 lekAkenlekAleldpkdadanlalAlyyqqlg.elekAeesfrkAltlkpnng......dvlNNYGtFLcqqkkyeeAeqqfeaAiedpk..YeqparsyeNag 142
                 +++  + l kA+ ldp d d     Al++qq   + +kA e+++kA++l + +g      + + N G+   q++k++e  + +++A+++ +    ++++++eN g
  MMETSP1061-20121228|2521_1 519 TQQGLAHLRKAIDLDPLDPDLIFLEALALQQNEsNYSKALERYNKAVQLMERQGcttvpfETHTNIGVLSHQTRKFDESLEAYTKALNALDadGSKRKATLENRG 623
                 6777889*********************999875789*************999855555567999999989999***********99977622456677777766 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.0088
   TIGR02521 147 kagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgir 211
                  ag++  a +  +  lk +p + +s l la + ++ g + e    l+  ++t++ ++e L+L  +
  MMETSP1061-20121228|2521_1 779 TAGRNLAAIELHKAILKRNPAYVNSYLRLACIAIDCGALNECAGWLKIAAETAPGNPEVLTLIGN 843
                 45555555555555566666666666666666666666666666666666666666666666555 PP

  == domain 6    score: 13.1 bits;  conditional E-value: 8.4e-06
   TIGR02521 139 eNaglcalkagdtekaekyltralkidpkr.pesllelaelklkkgqyaeAralleryqqtveq 201
                 + +g++ +++g+  ka++ ++r  ++  ++ +++ l+la+++l +++  eA +l++ y ++ e+
  MMETSP1061-20121228|2521_1 917 NGLGTVIAEKGELFKAKEVFNRVREVTGDSiSDAHLNLAHIYLAQKKHPEALQLYQSYLKRTEE 980
                 3467777888888888888888888776653778888888888888888888888888877655 PP

  == domain 7    score: 0.4 bits;  conditional E-value: 0.064
   TIGR02521  114 kyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpes 171 
                  +y++A+++ e A+ d++ e++   +    lc+ k++ ++ + + ltr ++  +k+ e 
  MMETSP1061-20121228|2521_1 1026 RYKKAMEHIELALIDNTSESKNG-LLTYNLCMTKLQAANCVLQKLTRNIRRTAKEVEE 1082
                  799**********9998776655.5667899999999888888888887766655444 PP

  == domain 8    score: -6.6 bits;  conditional E-value: 3
   TIGR02521  160 ralkidpkrpesllelaelk..lkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaake 224 
                  +  ++++  +e+ +e  +l+  lk ++ ++ +++ +r ++    + e+L  g++ +ka+++aaa+k+
  MMETSP1061-20121228|2521_1 1144 EIRELQRMASEAKREEQKLQkeLKMKEETKKQEARDRRAREKMRKVEDLRSGWEHEKAAAKAAAEKR 1210
                  3333444444444444433311233334444455556666667777777778888888877777766 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.6e-07   0.00036      54     120 ..     207     275 ..     154     289 .. 0.84
   2 ?   -3.3   0.0       1.1   1.5e+03      66      94 ..     298     326 ..     293     329 .. 0.81
   3 !   10.8   0.0   4.7e-05     0.064      48     119 ..     430     501 ..     427     507 .. 0.90
   4 ?   -0.0   0.0       0.1   1.4e+02      62      82 ..     548     568 ..     532     576 .. 0.78
   5 ?   -1.1   0.1      0.22     3e+02      56     122 ..     771     837 ..     761     874 .. 0.61
   6 !    6.0   0.0    0.0014         2      48     120 ..     909     982 ..     897     996 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.6e-07
   TIGR02552  54 ywlgLaaclqalkeyeeAiaaYalaaaldlddp..rpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                  +lgLaa++   +++ eA+  Y+ a  l++++   +  +  +   ++lg+  +A++a+k+a+++++e+ 
  MMETSP1061-20121228|2521_1 207 ALLGLAAVCYLEEKFGEAQTLYGEAIRLYPQKSgsATRVGFGLACYKLGQVDRAKAAFKRALDMDGENV 275
                 689**************************88761145566777889*******************9986 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.1
   TIGR02552  66 keyeeAiaaYalaaaldlddprpvyhaae 94 
                 +++e+Ai++ ++a  ld +++ +  h+a+
  MMETSP1061-20121228|2521_1 298 SHMEKAIKMMSMANLLDHSNAMVQNHLAN 326
                 67899999999999999999888777775 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 4.7e-05
   TIGR02552  48 dpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeek 119
                 +  +a+ ++ La +++  + +++A + Y++  +l+++   + + +a++l+  +++e A + L+l++ ++++ 
  MMETSP1061-20121228|2521_1 430 QEIQAESLFFLARVYHVRGMMDDAGKVYDRSCKLNPNLTPARFGLAQVLIYQEQYEPAAAHLQLVLGTSGNA 501
                 55666677889******************************************************9988865 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.1
   TIGR02552  62 lqalkeyeeAiaaYalaaald 82 
                  q  ++y++A++ Y  a++l 
  MMETSP1061-20121228|2521_1 548 QQNESNYSKALERYNKAVQLM 568
                 467789999999999999886 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 0.22
   TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeey 122
                 + La  +  +++   Ai+  +++++ ++   + ++++a   + +g  +e    Lk+a+e+a  ++e 
  MMETSP1061-20121228|2521_1 771 FNLARLHETAGRNLAAIELHKAILKRNPAYVNSYLRLACIAIDCGALNECAGWLKIAAETAPGNPEV 837
                 5555555566666666666666666666666666666666666666666666666666665555543 PP

  == domain 6    score: 6.0 bits;  conditional E-value: 0.0014
   TIGR02552  48 dpteakywlgLaaclqalkeyeeAiaaYalaaaldldd.prpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                 d ++a+ + gL+ +  +++e  +A + + +   ++ d+  ++++ +a  +la ++  eAl+  +  +++ ee +
  MMETSP1061-20121228|2521_1 909 DNANAYAANGLGTVIAEKGELFKAKEVFNRVREVTGDSiSDAHLNLAHIYLAQKKHPEALQLYQSYLKRTEEGS 982
                 56677777888888888888888888888888888555367888888888888888888887777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       430  (0.104827); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.80u 0.16s 00:00:00.96 Elapsed: 00:00:00.74
# Mc/sec: 2368.67
//
Query:       MMETSP1061-20121228|2522_1  [L=721]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 3069.81
//
Query:       MMETSP1061-20121228|2525_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       506  (0.123354); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1539.87
//
Query:       MMETSP1061-20121228|2527_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       434  (0.105802); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 822.39
//
Query:       MMETSP1061-20121228|2531_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 433.68
//
Query:       MMETSP1061-20121228|2529_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|2526_1  [L=1331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.68
# Mc/sec: 2583.49
//
Query:       MMETSP1061-20121228|2535_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   14.0   0.0     0.0057   13.9   0.0    1.0  1  TIGR00544 lgt: prolipoprotein diacylglyceryl transferase
     0.0056   13.3   0.0     0.0064   13.1   0.0    1.0  1  TIGR00898 2A0119: cation transport protein
  ------ inclusion threshold ------
      0.027   10.2   0.0      0.027   10.2   0.0    1.2  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00544  lgt: prolipoprotein diacylglyceryl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.2e-06    0.0057       7      52 ..      37      80 ..      32      84 .] 0.77

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.2e-06
   TIGR00544  7 ypsfdpvafslGpiairWYgliva.lgiiiaillivrklqkknvgiq 52
                 p++  +a+ +G   ++WYgl+++  g+iia+ +++  l k+n + +
  MMETSP1061-20121228|2535_1 37 SPKWRTMALLVG---VQWYGLSFLyYGAIIAVSIVFSSLDKNNDDDN 80
                689988999999...******87526999998888888888765544 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   4.6e-06    0.0064     314     355 ..      29      70 ..      17      73 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.6e-06
   TIGR00898 314 aslldllrtpklrkttlllmllwfttafsYygLvldleelgg 355
                   + dl  +pk r + ll+ + w + +f+Yyg +++++ ++ 
  MMETSP1061-20121228|2535_1  29 DRAQDLCSSPKWRTMALLVGVQWYGLSFLYYGAIIAVSIVFS 70 
                 567789999***********************9999987766 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   1.9e-05     0.027     438     471 ..      35      68 ..       6      80 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.9e-05
   TIGR01299 438 cfsyevreitlkltivwftlsfsyyglsvwfpdv 471
                 c s+++r ++l + + w+ lsf yyg  +    v
  MMETSP1061-20121228|2535_1  35 CSSPKWRTMALLVGVQWYGLSFLYYGAIIAVSIV 68 
                 9999**********************87665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|2530_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.09s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|2537_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1115.52
//
Query:       MMETSP1061-20121228|2538_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 1066.07
//
Query:       MMETSP1061-20121228|2536_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-48  161.8   0.2    1.8e-48  161.6   0.2    1.0  1  TIGR03673 rpl14p_arch: 50S ribosomal protein L14P
    7.7e-21   72.1   0.2      9e-21   71.9   0.1    1.1  1  TIGR01067 rplN_bact: ribosomal protein L14


Domain annotation for each model (and alignments):
>> TIGR03673  rpl14p_arch: 50S ribosomal protein L14P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   0.2   8.7e-52   1.8e-48       2     130 ..      14     142 ..      13     143 .] 0.98

  Alignments for each domain:
  == domain 1    score: 161.6 bits;  conditional E-value: 8.7e-52
   TIGR03673   2 airakvtralevgalvkvaDnsGaklvevisvkkykgvkrrlpaagvgDlvvvsvkkGtpelrkqvlkavvvrqrkeyrrpdGtrvkfeDnavvivteegepkGseikgpvareaaerfpkiasiasii 130
                 +i++kv+ +l++ a v++aDnsGak +++i+v +  g+ +rlp+a+ gD+v+ svkkG+pelrk+v+  ++vrqrk +rr++G+ ++feD a viv+++ge+kGs + gpva+e ae +p+ias a  i
  MMETSP1061-20121228|2536_1  14 GIKHKVSAGLPTAAVVNCADNSGAKNLHIIAVCNIGGRLNRLPKASSGDMVMCSVKKGKPELRKKVMPGIIVRQRKSFRRKEGVFIHFEDSAGVIVNNKGEMKGSAVSGPVAKECAELWPRIASNAGSI 142
                 78999**********************************************************************************************************************998655 PP

>> TIGR01067  rplN_bact: ribosomal protein L14
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.9   0.1   4.4e-24     9e-21       6     108 ..      27     130 ..      23     143 .] 0.85

  Alignments for each domain:
  == domain 1    score: 71.9 bits;  conditional E-value: 4.4e-24
   TIGR01067   6 srlkvaDnsGakkvecikvlg..gskkr..yakvGdvivvvvkkaipkkkvkkgdvvkavivrtkkevrRkdGstvkfddnacvllnkkkePlGtRifgpvarelre 108
                 ++++ aDnsGak++++i v +  g  +r   a+ Gd+++++vkk +p+ +    +v+  +ivr +k+ rRk+G+ ++f+d a v++n+k+e +G  + gpva+e  e
  MMETSP1061-20121228|2536_1  27 AVVNCADNSGAKNLHIIAVCNigGRLNRlpKASSGDMVMCSVKKGKPELR---KKVMPGIIVRQRKSFRRKEGVFIHFEDSAGVIVNNKGEMKGSAVSGPVAKECAE 130
                 67899**************876344344226899*************974...56************************************************9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 629.15
//
Query:       MMETSP1061-20121228|2542_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 1555.00
//
Query:       MMETSP1061-20121228|2541_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-07   29.5   0.0      2e-07   28.7   0.0    1.3  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   4.8e-11     2e-07      43     201 ..      71     236 ..      60     242 .] 0.73

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 4.8e-11
   TIGR01262  43 fkalNPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrarvralalliacdih...PlqNlrvlqlleeklgvdeeekkewlkhwiekGlaalEellkekagafcvG.devtladvcLvpqvyn.Aerfev.....dlaqyPtlkrieealaelpafqe 201
                   ++ P ++vP+L+id+++v+ qS Ai+ yL +      L p   +  a+    a+  a d+     +    +   +e + +++e++ +++ ++++ + l+ +E+l ++++  + +G +e++ ad +    + n A + e+     +l ++P+lk+  +++++l+++++
  MMETSP1061-20121228|2541_1  71 DSSRLPFGQVPMLEIDGKQVMIQSNAIMRYLGKLSG---LYPMTDHVLAQRVDAAMDQANDVFmgsTVLTYGLRYAIELSPEAKEKSYAHFNQTVLPNHLKKVERLFEASTTGWIAGtEEPSPADFVWYCSLTNmASKKEIsdkskSLVEFPKLKAFMQKFESLDEIKQ 236
                 556679*************************99876...666666666666666777777764111222233333344444456666677888889999*********7777788884689****9988887773668777333335999**********999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1228.51
//
Query:       MMETSP1061-20121228|2543_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1152.37
//
Query:       MMETSP1061-20121228|2546_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 221.55
//
Query:       MMETSP1061-20121228|2549_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 384.49
//
Query:       MMETSP1061-20121228|2544_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.55    8.5   8.7        1.8    6.8   6.0    1.9  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   6.0   0.00043       1.8      21      48 ..     108     135 ..     105     140 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00043
   TIGR02811  21 gaaagavaaatgrvasasaaaepsepek 48 
                 gaaa a+a+at  +a+a+aa++psep+ 
  MMETSP1061-20121228|2544_1 108 GAAAVAAATATADAAAAAAAVQPSEPDA 135
                 899999999****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2419.80
//
Query:       MMETSP1061-20121228|2548_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-46  155.0   0.6    9.9e-46  154.4   0.4    1.2  1  TIGR02825 B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
    1.2e-17   61.7   0.1    1.7e-17   61.2   0.1    1.3  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    1.7e-07   28.8   0.1    4.3e-07   27.5   0.0    1.6  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
    2.2e-07   27.8   2.3    7.5e-07   26.1   1.4    1.8  2  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    2.8e-05   20.8   2.4    0.00015   18.4   1.7    1.9  1  TIGR01751 crot-CoA-red: crotonyl-CoA reductase


Domain annotation for each model (and alignments):
>> TIGR02825  B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.4   0.4   1.2e-48   9.9e-46     112     326 ..      95     325 ..      79     326 .. 0.86

  Alignments for each domain:
  == domain 1    score: 154.4 bits;  conditional E-value: 1.2e-48
   TIGR02825 112 lplslalgtvgmpgltayfglleicgvkggetvlvnaaagavgsvvgqiak.lkgck.vvgaagsdekvaylkklgf.dvafnyktvksleetlkkasp......dgydcyfdnvggefsntvirqmkkfg..riaicgaistynrt...gplppgpapev.viyqelrmegfivnrwkgevrqkalkellkwvlegkiqy.keyv.iegfenmpaafmgmlkgenlgktiv 326
                 l ++  lg +g  gltayfgll +      +tvlv+ aaga gs+v qiak + gck v+g+agsdek a+l   g+ dva+nykt ksl  +++ as        g d  fdnvg ef ++ + ++   g  r+ +cgais+yn++    +  +gp   + ++ ++  m+gf+v+ ++ e    a+++l++w++ gki++ ke +   g+en+  a+++++ g n+gk + 
  MMETSP1061-20121228|2548_1  95 LSFASYLGVLGTTGLTAYFGLLRVGKPEPSDTVLVSGAAGATGSIVAQIAKhIVGCKtVIGTAGSDEKCAWLVANGIvDVAINYKTTKSLSGAIRDASSgtlgkgSGVDLVFDNVGSEFLEAALSNLAARGgaRVVLCGAISQYNHSkasASTAKGPRNYMnLLVKRASMKGFVVFDYRSEYP-AAIRDLVRWIAAGKIRCyKEDMrNVGIENFYPALVSLFEGTNIGKVVL 325
                 4444559*******************************************9789**9678************999955*******************96333333689****************9998765569***********86211456789987652678899***********9975.79*************9636655156********************875 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.1   2.1e-20   1.7e-17     122     324 ..     106     326 ..      77     327 .. 0.78

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 2.1e-20
   TIGR02824 122 EtffTvwsnlfelaklkagetvLihggasGiGttaiqlakal.g.akvlvtagsdekleaaekLG.advainyreed.Fvevvkeeteg.....kGvdvilDivggsyleknlkalakdG..rlvliallg..........gakaeldlakllakrltltgstlRarsaeeKaaiaaeleekvwpllaegkvrpvid..kvfpledaakAhellessehiGKivLt 324
                  t +T++  l++++k ++ +tvL+ g+a+  G+   q+ak++ g  +v+ tagsdek++   + G  dvainy+++     ++++  +g     +Gvd+++D vg+++le  l+ la  G  r+vl + +            ak   + ++ll+kr++++g  +    +e  aai++ ++     ++a+gk+r   +  + + +e+   A   l ++++iGK+vL+
  MMETSP1061-20121228|2548_1 106 TTGLTAYFGLLRVGKPEPSDTVLVSGAAGATGSIVAQIAKHIvGcKTVIGTAGSDEKCAWLVANGiVDVAINYKTTKsLSGAIRDASSGtlgkgSGVDLVFDNVGSEFLEAALSNLAARGgaRVVLCGAISqynhskasasTAKGPRNYMNLLVKRASMKGFVVFDYRSEYPAAIRDLVR-----WIAAGKIRCYKEdmRNVGIENFYPALVSLFEGTNIGKVVLK 326
                 5679************************************9635356888*********777777469*****98751556677665444444489*****************99998765577776665311111111102233468999*************9999999999987665.....57777777665411667899*******************98 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   5.2e-10   4.3e-07     125     200 ..     105     177 ..      89     192 .. 0.75
   2 ?   -2.5   0.0      0.67   5.5e+02     289     333 ..     282     325 ..     278     326 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 5.2e-10
   TIGR02817 125 PltaitawellfdrlkieedvagekralliiGaaGGvgsiliqlarqltel.tviatasraesqewvkelGahav.id 200
                   t +ta    f  l++ ++  + ++++l+ GaaG  gsi+ q+a+++ +  tvi+ta   e  +w+  +G   v i+
  MMETSP1061-20121228|2548_1 105 GTTGLTA---YFGLLRVGKP--EPSDTVLVSGAAGATGSIVAQIAKHIVGCkTVIGTAGSDEKCAWLVANGIVDVaIN 177
                 4444554...4777787755..56789********************987538**************99996444155 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.67
   TIGR02817 289 evaelvdeGkikttlaetlGainaanlkrahaliesgkarGkivl 333
                 ++ + + +Gki+   +e + ++  +n+  a   + +g+  Gk+vl
  MMETSP1061-20121228|2548_1 282 DLVRWIAAGKIRC-YKEDMRNVGIENFYPALVSLFEGTNIGKVVL 325
                 5667788899986.5777888999999999999999999999998 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   1.4   9.1e-10   7.5e-07     122     246 ..     103     237 ..      89     245 .. 0.69
   2 ?   -1.0   0.0      0.16   1.3e+02     289     324 .]     292     327 ..     280     327 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 9.1e-10
   TIGR02823 122 ilGtAGfTAaLsvealekagltpeegevlVtGAtGgVgslavalLsk.lGyevva.vtgkkeeeeylkelGakevisreeleee........kkkpleker.wagavDtvGgkvlanvlkqlkygg..avaacGlaag 246
                 +lGt G+TA + + ++   g  + +  vlV+GA+G+ gs+  ++ ++ +G + v  + g  e+ ++l + G  +v  + + +++        ++ +l k    + + D+vG++ l+++l++l ++g   v  cG  + 
  MMETSP1061-20121228|2548_1 103 VLGTTGLTAYFGLLRV---GKPEPSDTVLVSGAAGATGSIVAQIAKHiVGCKTVIgTAGSDEKCAWLVANGIVDVAINYKTTKSlsgairdaSSGTLGKGSgVDLVFDNVGSEFLEAALSNLAARGgaRVVLCGAISQ 237
                 6788888888776665...54556678*****************98735887655055666666*******999976555444311111111444555543367789**************99876336888887665 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.16
   TIGR02823 289 leeleelvkeisleelpevlekllagevkGRvvvkv 324
                 ++ ++e ++++ +e++  +l +l +g++ G+vv+k+
  MMETSP1061-20121228|2548_1 292 IRCYKEDMRNVGIENFYPALVSLFEGTNIGKVVLKI 327
                 5566788999***********************986 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.7   1.9e-07   0.00015     174     318 ..     110     241 ..      94     244 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.9e-07
   TIGR01751 174 tayrqLvgkkpaelkpGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaeiarelGaeavidrqdfdlkgrlpdlnseavkewtkevkrfgkairevlGe.edvkivlehsGratfpvsv.yvvkrgGm.vvicggttGynld 318
                 tay  L+     +  p d+vL+ GaaG  Gs+  q+a+   g   +v+      e +  l a++++d  ++++k+ ++   s a+          + a   +lG+   v++v++ +G + + +++  ++ rgG  vv+cg+ + yn+ 
  MMETSP1061-20121228|2548_1 110 TAYFGLLRV--GKPEPSDTVLVSGAAGATGSIVAQIAKHIVGCK-TVIGTAGSDEKCAWLVANGIVDV-AINYKTTKSL--SGAI----------RDASSGTLGKgSGVDLVFDNVGSEFLEAALsNLAARGGArVVLCGAISQYNHS 241
                 555555433..334689********************9877654.5667777778899999**99974.4555443332..2333..........4444556777678************998873477888754999*******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1350.95
//
Query:       MMETSP1061-20121228|2553_1  [L=766]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-21   72.2   8.2    4.1e-20   69.9   5.7    2.1  1  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
    3.1e-10   36.2   9.4    3.1e-10   36.2   6.5    2.3  3  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
  ------ inclusion threshold ------
       0.13    8.0   0.7       0.17    7.5   0.5    1.1  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial


Domain annotation for each model (and alignments):
>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   5.7     3e-23   4.1e-20       3     311 ..     160     754 ..     157     758 .. 0.75

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 3e-23
   TIGR00367   3 lvigllilglilvivsaellvksltviaeklgisdlviGvTvvaagtSlPElftsliavliaksd...igigtvvGSnifNillvlglcallsreilvltkllkrdvsfllvvlillliflldgvlesllllvllflyvvylkflvkver.kqain............................................................................................................................................dtlteeqvdenerq..................................................................................................................rkqitfllvllivg..................................ltllvvgsrllVdsavqiaetlgiseeiiGltilAaGTSlpeLvvsviaarkglgdlavgsvvGsNifdIlvglglp..allatirvkpvavsldalvlvivllllllivvil..sialkrw.....lglillalYia 311
                 +v+ +++l+ +l  ++++++  sl+  + klg+++  +GvT+ a+g  + ++ +++ a l+++++   +++g   G +++   +v g+  l++  ++     l rdvs l+v++i++   l  gv+ + ++   + ly+ ++  ++ ++  ++  +                                                                                                                                                                                                                                                                            +++  f l+++ v+                                   t++   +  lV     ++ +l i+  ++Glt+lA G S+ +L   ++ arkgl ++a+       +f+Il+glgl+  +l +++   ++ vsl a++l+    ++l  ++il   i ++++      g + ++lY +
  MMETSP1061-20121228|2553_1 160 VVVWMVTLFKLLGSTAEDFFSCSLEMFSVKLGLPPRFAGVTLLALGNGAADVSATVSAILSDAENgykLSLGALTGAAMLVGGVVSGVVVLVADGVKCRGA-LIRDVSALVVTVIVVWRNLSSGVVTRADTTLFFGLYLAFISSVLAADIyHR--TvvvprleaiaaavgdaevasspppnafmrivtsisnydntcvtmaapnpspspldeaaaaaaavaastttttttttttnsppsiamtdvvgsgaavdddqpivlhgqngilspsratapgsslevddgggmytlvedhidR------------VcigagsagspsynwmgawqdgkqeisaelrvlwdqivsggnesyygedgegdelklyerclllfefpftlfrkatipipcegyynrgfvalsvalaplwfsyyllaqhdinlwsEESFSFFLIYFGVScvigllilrfapggegnmslvvatpiafygfvmaATWIDWIADRLVAVLNFVGIVLHIPGAVMGLTVLAWGNSVGDLSANISMARKGLANMAMTACFAGPVFNILLGLGLGfrSLESQTGEAESQVSLSAPILAGFVFIVLNCATILavGIFVGKGrietsYGYVAVTLYAI 754
                 67889999999999**************************************99999999988765669***********9999*********77776655.99**************************99999999999999998888333..3468999999999999999999999999999999999999999999999999999999999988888877666666666666666666555555555555555555555555555555555555555555555555555550............055555555555555555555555555556666666666666666666666677777777788888888888888888888888888888888888888899999888888898855555555555555555566666666666666666666666677777699999999999***********************************************************99887762266666556667777777777654444333333320044444445555555555555544 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   2.6      0.17   2.4e+02     462     549 ..     162     252 ..     158     283 .. 0.76
   2 ?   -5.4   1.5      0.83   1.1e+03      76     115 ..     355     394 ..     339     405 .. 0.52
   3 !   36.2   6.5   2.2e-13   3.1e-10    1051    1201 ..     613     765 ..     605     766 .] 0.81

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.17
   TIGR00927 462 fGmlyvfvalaivcdeyfvpalGvitdklqisedvaGatfmaaGGsapelftsliGvfishsn...vGiGtivGsavfnilfviGtcalfs 549
                   m+ +f  l    +++f  +l + + kl +    aG t++a G  a ++ +++  ++    n   + +G++ G+a++    v G   l +
  MMETSP1061-20121228|2553_1 162 VWMVTLFKLLGSTAEDFFSCSLEMFSVKLGLPPRFAGVTLLALGNGAADVSATVSAILSDAENgykLSLGALTGAAMLVGGVVSGVVVLVA 252
                 56888899999999*********************************99987776665544443334578888888776666666666655 PP

  == domain 2    score: -5.4 bits;  conditional E-value: 0.83
   TIGR00927  76 ssdpskssselevealapqatvgrdeatpsiaventpsip 115
                    ++++s+    ea a  a+v+   +t + ++  t s+p
  MMETSP1061-20121228|2553_1 355 TMAAPNPSPSPLDEAAAAAAAVAASTTTTTTTTTTTNSPP 394
                 4444444444444444444445444444444444444444 PP

  == domain 3    score: 36.2 bits;  conditional E-value: 2.2e-13
   TIGR00927 1051 flGsilwiamfsylmvwwahqvGetiGiseeimGltilaaGtsipdlitsvivarkGlGdmavsssvGsnifditvGlplpwllfslinglqpvpvs.snGlfcaivllflmll.fvissialckwrmnkilGftmfllyfvfliisvmledr 1201
                  f+ +  wi   +  +v     vG  + i   +mGlt+la G s+ dl + + +arkGl +ma+++     +f+i +Gl l +  +    g     vs s  ++   v++ l     +   i + k r++   G+    ly ++++ s+ le r
  MMETSP1061-20121228|2553_1  613 FVMAATWIDWIADRLVAVLNFVGIVLHIPGAVMGLTVLAWGNSVGDLSANISMARKGLANMAMTACFAGPVFNILLGLGLGFRSLESQTGEAESQVSlSAPILAGFVFIVLNCAtILAVGIFVGKGRIETSYGYVAVTLYAIYIVTSITLEFR 765 
                  44445599999999999999************************************************************99766555555444444233444444444444330334579999**************************976 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.5   0.00013      0.17     849     896 ..     371     418 ..     313     424 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00013
   TIGR03900 849 vkaakggkaraakaltavyqvePPrieladdaaagapvvedekvklsG 896
                 ++aa   ++++++++t++++ +PP+i+++d+ ++ga v +d+ + l G
  MMETSP1061-20121228|2553_1 371 AAAAAVAASTTTTTTTTTTTNSPPSIAMTDVVGSGAAVDDDQPIVLHG 418
                 223333444566677888999*******************99999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.22s 00:00:00.68 Elapsed: 00:00:00.53
# Mc/sec: 1907.62
//
Query:       MMETSP1061-20121228|2550_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 949.47
//
Query:       MMETSP1061-20121228|2554_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00094   16.0   0.6    0.00094   16.0   0.4    2.5  2  TIGR00893 2A0114: D-galactonate transporter
  ------ inclusion threshold ------
       0.65    6.6   6.5       0.18    8.4   0.3    2.2  2  TIGR03472 HpnI: hopanoid biosynthesis associated glycosyl transferase protein HpnI


Domain annotation for each model (and alignments):
>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.4   4.6e-07   0.00094      22      80 ..      98     158 ..      93     186 .. 0.79
   2 ?   -3.9   2.5      0.51   1.1e+03     303     303 ..     464     464 ..     367     548 .. 0.55

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.6e-07
   TIGR00893  22 edLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftll..qafat 80 
                 + Lgl+ + + +  s++s+  ++ +lp+g+l dr G k tl  a +  g  +++  +a+++
  MMETSP1061-20121228|2554_1  98 QSLGLPPTGVLWLGSLYSALVTVAELPSGILSDRWGRKATLVGAFLGLGGSLAVtaMALMV 158
                 679****************************************999887555550055444 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 0.51
   TIGR00893 303 l 303
                 +
  MMETSP1061-20121228|2554_1 464 A 464
                 1 PP

>> TIGR03472  HpnI: hopanoid biosynthesis associated glycosyl transferase protein HpnI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.3   8.6e-05      0.18     247     328 ..      54     135 ..      52     171 .. 0.71
   2 ?    0.7   0.7     0.019        38     267     357 ..     428     519 ..     410     528 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 8.6e-05
   TIGR03472 247 vvvetevteeslaellehelRWsrTiravdpvgylgsvitypvplavlavll.gaawawplvalalavralarlvleratgaa 328
                 + ve +v+e+ l++ l+++lRW++ +r + ++++l+  +  p     l++   g  w+  l  ++++v  l + +l+ + g  
  MMETSP1061-20121228|2554_1  54 LEVEVQVEEALLRARLDRQLRWLAVVRCL-RAAHLAQPLLVPYYSQSLGLPPtGVLWLGSLYSALVTVAELPSGILSDRWGRK 135
                 56999**********************87.57788888888888888886555666766666666666666555555555444 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.019
   TIGR03472 267 RWsrTiravdpvgylgsvitypvplavlavllgaawawplvalalavralarlvlerat...gaalrallllplrdlLsflifvaalfgsrVvW 357
                 RW+  + + +  + + s    +   +++ +l ++a a +l+al ++   + +   +r +   g+a+ a+lll +   L+    + a++  +V+ 
  MMETSP1061-20121228|2554_1 428 RWLSAVPSRNTKSRISSSTNSTTGALLICLLGSSALAYGLMAL-ATKIHIHHYHSSRSVpavGCAMLAALLLSMVRGLAWP-VLGAAINASVEH 519
                 7999999999999988887777776666644445556666665.4444455555566553336666666677766666543.344555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 2258.48
//
Query:       MMETSP1061-20121228|2555_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1473.28
//
Query:       MMETSP1061-20121228|2556_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   15.6   0.0     0.0036   15.1   0.0    1.2  1  TIGR01259 comE: comEA protein


Domain annotation for each model (and alignments):
>> TIGR01259  comE: comEA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.9e-07    0.0036      57     117 ..      71     127 ..      55     130 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.9e-07
   TIGR01259  57 ealvnlnkAsleeLqalkGiGpakAkaiieyReenGaFksvddltkvsGiGeksleklkdy 117
                 +++v +n+A  +   +++G+ p+ A  i+     nG +k+v dl +++G+ ++  + +k+y
  MMETSP1061-20121228|2556_1  71 GNIVDVNNANVRVYLKMPGLYPTVAGKIA----SNGPYKTVGDLYNIKGLSGAEKDMIKKY 127
                 57899*****999999**********997....5****************99888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 797.21
//
Query:       MMETSP1061-20121228|2559_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-33  112.5   4.0      6e-33  112.1   2.8    1.1  1  TIGR00400 mgtE: magnesium transporter


Domain annotation for each model (and alignments):
>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   2.8   1.5e-36     6e-33     271     447 ..     130     307 ..     123     310 .. 0.94

  Alignments for each domain:
  == domain 1    score: 112.1 bits;  conditional E-value: 1.5e-36
   TIGR00400 271 syldtsllvvakkrvvWLlvLlvsstltasiissyedvlkkvvaLaafiPllidasGnaGaqssavvirgLakeevkvkdvlkvilreirvsilvGavlavvvavvavflqg.dllvafvvassLfvsllvaklaGgllPivlkklkldPalmsgPlittladvlslliylniakall 447
                  yl    + v  +rv WL ++l s   ta i++ +e+ l+k + La f+Pll + +Gn+G q+   ++  L+ +++k  d  kv+ +e  ++il G +l+  va +a+   g  + va+v+  +L +++++a+ +G+++P+v   + ldP+++++P +t l+dv +l+ y+ ia+ ++
  MMETSP1061-20121228|2559_1 130 RYLRDPFYRVGLQRVGWLGIFLGSLSATALIMNVFEETLEKHIELALFVPLLAGHGGNTGGQTVGTILSALSAGTIKTSDAPKVVWKESMAGILSGSILGAFVAPIAYKVLGvSFHVAVVLFFTLPLVSMIASTLGSIIPFVCVVVGLDPSVIAAPAMTSLVDVAGLMGYFMIANYIF 307
                 577777888999***************************************************************************************9988877776655599***********************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1657.78
//
Query:       MMETSP1061-20121228|2558_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       413  (0.100683); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 967.92
//
Query:       MMETSP1061-20121228|2557_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.14s 00:00:00.65 Elapsed: 00:00:00.35
# Mc/sec: 1840.31
//
Query:       MMETSP1061-20121228|2560_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 1447.48
//
Query:       MMETSP1061-20121228|2562_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1315.89
//
Query:       MMETSP1061-20121228|2561_1  [L=1013]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-28   97.6  21.8    2.1e-28   97.1  15.1    1.1  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1  15.1   5.2e-32   2.1e-28       8     394 ..     388     781 ..     384     783 .. 0.91

  Alignments for each domain:
  == domain 1    score: 97.1 bits;  conditional E-value: 5.2e-32
   TIGR00797   8 aqpllslvDtafvGhlgpveLaavglg.slvlmvliiillglltattalvaqavGagnqqrlsrsasqslllalllgllvavvlifaakpllslmgadeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilif.kfg.lGivGaAlAtvisqylmflllllyilkakkvdlknegllkp....dwealkrllklglplllrvilvsflvtllallvarlG..stalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpkrakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpllfllglvtglglkg 394
                 +  +++ + +a +Gh   v+ a + +  ++v+ ++ +i +g +  +  l+ qa+G +n  +++r+++ ++++ l++ ++ av++ f+++  + + g de++ae++++Y+ ++++g++ + +  +l   l+++g+       t+++n+++  L + +       l + Ga    + s +l +++ + +++    +d+ +egl+k+    d +a+k++++  lpl+++ il      +++ +  r+G   +++Aa +++  ++s+  +l +G++ A++++vG ++Gag+++ a+ ++ +al ++l++++    il++ +++i++  t dp  ++++ ++ +++++ q++ ++ +v  ++l + g+ ++a++  ++  w+ig p++ +++ +++  ++g
  MMETSP1061-20121228|2561_1 388 LGEIFGVIEIAAIGHFMGVPQANAYIIvGTVTGFTGTISTGFYECAGVLIPQADGTRNDLMIGRYMQLGIIFYLITMIPGAVFWCFFTDRAVTFYGFDETTAEMGRRYFLATLPGYLTYGVDAVLYELLNTVGRESYCTWFTILSNISHTGLVVGMLWwGVKdLFFLGA--IETASGILFLIINFTILMYRGWLDRYWEGLFKTnglkDSRAVKNVINTALPLSFAWILTYGEWEVMTFFCRRMGnnGAEVAAWGLMGYIWSAFETLTDGFGDAAEVRVGFRMGAGQVRLARLATDKALYVSLIVAVYATGILFVLAQYIPGWMTPDPTLQRMIFDIIPLIGFGQCLMVWGMVAWAILGAQGRIRIATALEFFISWGIGAPIAAIFVYMFNYNIEG 781
                 567899999*******999888777777****************************************************************************************************************************99988755558666665..5556666666666666666778888888888872222567888888888889999999998999**********66679****************************************************************************************************************************************9888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1013 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.45
# Mc/sec: 2971.22
//
Query:       MMETSP1061-20121228|2563_1  [L=917]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-18   64.4   0.0    1.5e-18   63.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.2e-10   39.0   0.2    1.2e-09   35.8   0.0    2.3  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   7.2e-22   1.5e-18       7     202 ..     357     540 ..     352     579 .. 0.90

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 7.2e-22
   TIGR03903   7 aikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqL 202
                 a+k +    +++e  v+  + eia+ ++L hP+iv+ l+  +     +F v e+  G  l     +  + + +e +r +  +L a+   h++ v hRDLk +ni+  +   +s+ k++DFG++ +  g+++  ++tl   te +G+    aPe L+g + t ++D+++ G+i    L  ++   G   ++++ + L
  MMETSP1061-20121228|2563_1 357 AMKSIHLSRVTDETFVQELKNEIAILKKLDHPHIVRPLETYHYRR-QIFIVMEHCSGGDLY----SRDPYTEEEAARHISSILSAVGYLHANNVAHRDLKYENILFVNDSPKSEIKLIDFGLSKIY-GTGK--TQTL---TEGVGTIYTMAPEVLKG-SYTKQADVWSVGVIAYMLLSSQMPFYGRKRQHIVEQIL 540
                 77888888899****************************999988.9**********8754....5679999***************************************************986.4444..3555...589****9********9.58************999999999999999888888776 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   5.8e-13   1.2e-09      43     138 ..     374     476 ..     357     518 .. 0.82
   2 ?    0.0   0.0     0.051   1.1e+02      36      89 ..     571     622 ..     568     640 .. 0.70

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 5.8e-13
   TIGR03724  43 RtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkd...lleekelellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkk 138
                   ++E+ +l+++ +  +  P+     +++  ivme+ +g +l     ++ee+  ++++++  +vg lH ++++h Dl  +Ni++     ++++ liDfGL+k+
  MMETSP1061-20121228|2563_1 374 ELKNEIAILKKLDHPHIVRPLETYHYRRQIFIVMEHCSGGDLYSrdpYTEEEAARHISSILSAVGYLHANNVAHRDLKYENILFVndspKSEIKLIDFGLSKI 476
                 4789****************999999999************965122344544599999999*********************9635556789********97 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.051
   TIGR03724  36 DeklrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlle 89 
                 De+l +eR  + +  l++   a+v+ P  +++++ +   +m+y+  +klk++  
  MMETSP1061-20121228|2563_1 571 DERLDAERASSCVW-LNKRFAASVRGPREFEIHQARN-SMMQYVGYTKLKKMAL 622
                 67777777766554.4555567799999999999955.579********98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.45
# Mc/sec: 2689.64
//
Query:       MMETSP1061-20121228|2564_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.10s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1839.33
//
Query:       MMETSP1061-20121228|2566_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 2198.66
//
Query:       MMETSP1061-20121228|2565_1  [L=870]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.26
# Mc/sec: 4416.56
//
Query:       MMETSP1061-20121228|2567_1  [L=673]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-33  114.0  16.4    7.7e-23   78.9   8.5    3.1  2  TIGR00788 fbt: folate/biopterin transporter


Domain annotation for each model (and alignments):
>> TIGR00788  fbt: folate/biopterin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   9.1e-13   3.7e-09      37     114 ..     119     195 ..     109     205 .. 0.88
   2 !   78.9   8.5   1.9e-26   7.7e-23     128     452 ..     235     543 ..     220     550 .. 0.85

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 9.1e-13
   TIGR00788  37 ekGiaglvrlalspmltdrlgldgaryqrlsglsslgwalkalagvlsdlfalfGYtkrwylvlsallgsallyglLp 114
                   Gi++    +l  +   +lg++ a++  +s+l sl++ +k ++g++sd f+ +GY++++y+ l + +  a ++g+L 
  MMETSP1061-20121228|2567_1 119 LVGILQGLSGPLINVYPLDLGATEAQQTTISTLKSLPASMKLIFGFISDNFPILGYRRKSYMLLGWAMS-AAAFGSLL 195
                 568888888899999999************************************************999.77777664 PP

  == domain 2    score: 78.9 bits;  conditional E-value: 1.9e-26
   TIGR00788 128 flaalakalidvladalyveriR.rspaagpsLvslvwgasllGglissvlsGplldkkltrilvlitaallllslfvanlvkErrafvrpridtvlevnvalltlgvlalvkkqilglkeaiklleiakavlfiflsylnlPgvlnavfvattqvLplgPefsgtvklvvnlgslagvvvvdrflkllplRlvfgltavlltlsslfdlilvkrlNlaiGisdevfvlgdsiilevlaqlkfmPvlvllarlcPsGsEssvfalLasilhlgsvvssalGvlLmelig......itsdnsnalwllillhilapllplpllyllPrledvi 452
                 fl  l   + dv+ad+++ e++R + p a ++ +s ++    +G + +  ls  l + k +  +++  + l+l  l  + +++E r                    + + + k+q  +++  +  + +++++ f+++ y +l     a   +    L+++   +  ++ + ++ + +g++ ++ f+   + Rlv  + ++l  + s ++++l+ ++  ++G++  vf+lgd    e la ++f+P  +++ +lcP+GsE++ +a+   i + +  vs+a+   L   i+        + + +    l ll+++  l  + l++llPr ++++
  MMETSP1061-20121228|2567_1 235 FLFGLGFWVADVMADSVVAEKARlEPPFARGATQSSCYSYRFFGYMCAGPLSTALYKWKGPGSVIFLLSILPLSILPLIYYLGEMR------Y-------------APVRSTKEQCKEIWTTVCSRSVWQPMAFVYI-YNALQVGNAAWNQYLRTTLEFTSTQINLIYIASSVLLYVGIITYKYFMMDWSWRLVYVICTLLNGVFSALQILLILEI--TFGLPPFVFALGDDAFSEFLAGVQFLPSTIMMVQLCPEGSEGASYAMFTTIHNSAGQVSTAVSTRLLS-IWdvskeaLAEGHLSGMVNLTLLTTILQLSGILLVGLLPRTKEEL 543
                 5555666679***************************************************9999999999988899999999976......2.............12456799***********************.666655555555566666888889999999999999**************************************9665..899*************************************************************9986.676554443333333344444444444455567999***988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 1973.97
//
Query:       MMETSP1061-20121228|2568_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1229.58
//
Query:       MMETSP1061-20121228|2572_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 622.23
//
Query:       MMETSP1061-20121228|2573_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-06   23.6   0.0      2e-05   22.6   0.0    1.5  1  TIGR01068 thioredoxin: thioredoxin


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   4.8e-09     2e-05       4      89 ..      93     184 ..      91     194 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 4.8e-09
   TIGR01068   4 enfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqe........iaakygirsiPtlllfkngkevkrvvGakp 89 
                 ++f ++ ++sd  ++  f+ +    C ++   l++la++   + k+vK+nv+  ++        + ++ g++ +Ptl+l+kn k  ++v G+ +
  MMETSP1061-20121228|2573_1  93 KEFFKMSKESD-RIVFHFYRTSTRICDVFHAHLAKLAAKHL-ETKFVKINVEGCDNntgggaafLVERLGVMVMPTLVLVKNRKAFHHVRGFDE 184
                 56667777877.8999*********************6655.79******97533311232222457889******************999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1047.40
//
Query:       MMETSP1061-20121228|2570_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 759.94
//
Query:       MMETSP1061-20121228|2569_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 864.53
//
Query:       MMETSP1061-20121228|2574_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1653.01
//
Query:       MMETSP1061-20121228|2576_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1376.97
//
Query:       MMETSP1061-20121228|2571_1  [L=1371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.48    6.5   8.1       0.92    5.5   5.6    1.4  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        2.1    4.3  15.2        3.4    3.6  10.5    1.2  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.6   0.00045      0.92     298     428 ..    1178    1294 ..    1060    1330 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00045
   TIGR00934  298 rriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldseena 428 
                  r++ ++ik  l+  +  +++q +  ++  +ksf     +r+  +++ +  ++ d ++ +++k++qk      k++++++++ ++++++++ +++++ +k+ ++ +++++ + +      s  +s +++ ++
  MMETSP1061-20121228|2571_1 1178 RMVPKEIKENLADLKKLRKEQTAALKTGSQKSFF----ARVW-KRLHEEPKKEDQKDPKKQKQKQKQ-----KEQSKDQQQQQQQQQQQQKRKDGKDPKEQREAVKQSASSSS----SSSASASATTTTTT 1294
                  4444444444444444444444444444444443....1111.123333333333333333322222.....22233333333333444444444444444444444332111....11222222222222 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  10.5    0.0016       3.4     502     591 ..    1200    1289 ..    1197    1324 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0016
   TIGR01069  502 Akeklgeekeeinkviekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelekeaqealkaakkeveeiirelkek 591 
                  A  k g++k    +v ++l e+ k+  +k  + +k +++++ + k+ +q+ ++++++++++  +  ke++ea+k++ + + +   ++   
  MMETSP1061-20121228|2571_1 1200 AALKTGSQKSFFARVWKRLHEEPKKEDQKDPKKQKQKQKQKEQSKDQQQQQQQQQQQQKRKDGKDPKEQREAVKQSASSSSSSSASASAT 1289
                  55678999999999999************999999999999999999999999999999999999*********9988776655444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       408  (0.0994637); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.92u 0.20s 00:00:01.12 Elapsed: 00:00:00.78
# Mc/sec: 2319.96
//
Query:       MMETSP1061-20121228|2578_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.45
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|2575_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2263.37
//
Query:       MMETSP1061-20121228|2577_1  [L=808]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-18   63.8   0.0    2.5e-09   33.2   0.1    2.1  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    3.9e-16   56.4   0.1    2.2e-13   47.3   0.1    2.7  3  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
      7e-16   55.9   0.0    1.5e-11   41.5   0.0    2.7  3  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    6.5e-11   39.4   0.0    1.5e-08   31.6   0.0    2.4  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    6.8e-11   38.9   0.3    6.8e-11   38.9   0.2    2.2  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.1e-06   25.0   0.0    1.8e-06   24.3   0.0    1.2  1  TIGR00631 uvrb: excinuclease ABC subunit B
    9.8e-05   18.6   0.0    0.00019   17.7   0.0    1.4  1  TIGR00580 mfd: transcription-repair coupling factor
  ------ inclusion threshold ------
      0.013   11.9   0.0      0.072    9.4   0.0    2.1  2  TIGR00595 priA: primosomal protein N'


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.4e-10   7.2e-08      16     155 ..     115     263 ..     103     359 .. 0.81
   2 !   33.2   0.1   4.9e-12   2.5e-09     250     360 ..     399     506 ..     372     514 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 1.4e-10
   TIGR04121  16 afQkevleaaeegesglliapTGaGKTlavflpsliela.............akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgs 155
                 + Q e+++ + ++++ +    TG+GKTla  lp++++l+              + ++ +++ +l + P + La+++++ l+++++ lgl  +v    G  s + ++r  ++  diL+ Tp  +   l  ++ + ++++++ +v+DE  e+l+ 
  MMETSP1061-20121228|2577_1 115 PVQGEAFDPVLARRDVIGRSRTGTGKTLAFGLPAITRLVkwmeekgirdpatGRMQRGRSVSMLVLCPTRELARQVQQELSSVAQPLGLFSEV--FHGGVSYDPQSRALRNGLDILVGTPGRVIDHL--NRGTLRLNECDLIVLDEADEMLSM 263
                 56888888899999999999*****************99999999988776444455599****************************99877..5799*********************9876555..5566789***********999876 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 4.9e-12
   TIGR04121 250 ttlvFtNtRsqa.EllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrl.depskillvptna 360
                  t+vFt t+  a El+   + +         a  Hg + ++qR+   aa++ag + ++v+T     G+D ++vdlv+q   p+ v   + R GR++ +  +  s +++ p ++
  MMETSP1061-20121228|2577_1 399 KTIVFTETKRAAdELVSGGVFKSLTA----QA-LHGDVGQKQRDSTLAAFRAGAFNVLVATDVAARGIDIKNVDLVVQFDPPRDVDTYVHRSGRTGRAQtNGVSVLMFSPNQQ 506
                 68999999666625665556555544....24.48***********************************************************9986514566666667665 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0015      0.78      11      51 ..     110     150 ..     103     154 .. 0.92
   2 ?   -1.9   0.0      0.35   1.8e+02     218     267 ..     168     221 ..     152     232 .. 0.74
   3 !   47.3   0.1   4.4e-16   2.2e-13     211     332 ..     384     505 ..     356     516 .. 0.91

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0015
   TIGR01389  11 yeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaLl 51 
                    F + q e  + vl++rdv++   tG Gk l + +Pa+ 
  MMETSP1061-20121228|2577_1 110 IVRFTPVQGEAFDPVLARRDVIGRSRTGTGKTLAFGLPAIT 150
                 567999*********************************86 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.35
   TIGR01389 218 ylkkereksGiiYassRkkveelaeaLesk....giealaYhaGlskkvRaeaq 267
                  +++ r+ s ++ + +R+   ++++ L+s     g+ +  +h+G+s +  ++a+
  MMETSP1061-20121228|2577_1 168 RMQRGRSVSMLVLCPTRELARQVQQELSSVaqplGLFSEVFHGGVSYDPQSRAL 221
                 567777788999999*99999999999875223367788999999887666655 PP

  == domain 3    score: 47.3 bits;  conditional E-value: 4.4e-16
   TIGR01389 211 kkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaD 332
                 kkkq  + ++++     i+++++++  +el +    k ++a a h+ + +k+R+ ++ +F     +v+vat     Gid  +v  v+ +d P+++++y   +GR GR   +  ++l++s++ 
  MMETSP1061-20121228|2577_1 384 KKKQESSAVQQKIFGKTIVFTETKRAADELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRAGAFNVLVATDVAARGIDIKNVDLVVQFDPPRDVDTYVHRSGRTGRAQTNGVSVLMFSPNQ 505
                 55566666777777788*****************************************************************************************************9864 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   5.5e-05     0.028       9      49 ..     110     150 ..     105     154 .. 0.93
   2 ?   -2.1   0.0      0.51   2.6e+02     228     263 ..     176     215 ..     167     230 .. 0.76
   3 !   41.5   0.0     3e-14   1.5e-11     220     334 ..     392     505 ..     378     519 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.5e-05
   TIGR00614   9 lesfrpvqlevinavlegrdalvvmatGgGksLCyqlpavv 49 
                   +f pvq e+ + vl+ rd++    tG Gk L + lpa++
  MMETSP1061-20121228|2577_1 110 IVRFTPVQGEAFDPVLARRDVIGRSRTGTGKTLAFGLPAIT 150
                 5689**********************************985 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.51
   TIGR00614 228 sGiiYClsrkkveqvaaeL....qkkglaaaaYhaglees 263
                 s ++ C++r+ + qv +eL    q +gl +  +h g++ +
  MMETSP1061-20121228|2577_1 176 SMLVLCPTRELARQVQQELssvaQPLGLFSEVFHGGVSYD 215
                 56899****9999999999333345789999999998765 PP

  == domain 3    score: 41.5 bits;  conditional E-value: 3e-14
   TIGR00614 220 ivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaD 334
                 ++++  gk+ i++  +++ ++++ +    k+l+a+a h ++ +++r++    f +   +v+vat     Gi+  +v  v+ ++ p+++++Y   sGR GR + +  +vl+++p+ 
  MMETSP1061-20121228|2577_1 392 VQQKIFGKT-IVFTETKRAADELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRAGAFNVLVATDVAARGIDIKNVDLVVQFDPPRDVDTYVHRSGRTGRAQTNGVSVLMFSPNQ 505
                 666777899.***************999************************************9999*****************************************998753 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0029       1.5     287     368 ..     177     259 ..     168     296 .. 0.64
   2 !   31.6   0.0     3e-11   1.5e-08     478     574 ..     417     512 ..     366     522 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0029
   TIGR00643 287 valmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekve.....fkeLalviiDEQhr 368
                 ++++ PT  LA+Q  ++l+++ +plg+  ++  g +  + ++    ++++G ++++vGT   + ++ +     ++e  l++ DE   
  MMETSP1061-20121228|2577_1 177 MLVLCPTRELARQVQQELSSVAQPLGLFSEVFHGGVSYDPQS---RALRNG-LDILVGTPGRVIDHLNrgtlrLNECDLIVLDEADE 259
                 45788*********************9999999998766544...345555.57999998766665441111166667888888654 PP

  == domain 2    score: 31.6 bits;  conditional E-value: 3e-11
   TIGR00643 478 kafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLvaepkseeakkRL 574
                  +f++l+ + lhg + ++++++ l++Fr++  ++LvaT v   G+d+ n+ ++v  d+ R   +  H   GR gR +++++ +L+ +p++++   R+
  MMETSP1061-20121228|2577_1 417 GVFKSLTAQALHGDVGQKQRDSTLAAFRAGAFNVLVATDVAARGIDIKNVDLVVQFDPPRDVDTYVHR-SGRTGRAQTNGVSVLMFSPNQQSDIVRI 512
                 4678899999**************************************************88888887.7****************99988877766 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.2   1.3e-13   6.8e-11      21     387 ..      97     505 ..      84     617 .. 0.75
   2 ?   -5.2   5.0         3   1.5e+03     527     594 ..     709     780 ..     695     804 .. 0.76

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 1.3e-13
   TIGR03817  21 vepdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.................pratalylaPtkalaadqlravkelee.rdvraatydGdtpae.erewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGv.fGshvalvlrrlrrlcaryGaePvfllasatsadpaaaasrliGleveavtedgsPrgartvvlwePalle.................................legengapvrrsasaeaadl..ladlvaegv..rtltfvrsrrga.evvaleakerlaevdaelaervaayraGylaedrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvarddP 387
                 +++ +++ l+ +Gi +    q +a +   a ++v+    t +Gk+la+ lP++++l++                  +  + l l+Pt+ la+   + ++++ +  ++ ++++ G  + + + + +r+  ++++  P  +    + + +r +  l++   +v+de+ +   + f  +v ++l     l    G +P  ll sat+    ++  r   ++v+ ++  g   g+r       + ++                                  ++e+  p+ + a+a  a+    +  v++++  +t++f  ++r a e+v+    + l+   + l   v        + +r    +a+++G +  ++at+    G+di  +d vv    P  v ++  ++Gr+Gr+  + + vl+ + + 
  MMETSP1061-20121228|2577_1  97 LDQRIIDVLSGKGIVRFTPVQGEAFDPVLARRDVIGRSRTGTGKTLAFGLPAITRLVKWmeekgirdpatgrmqrgRSVSMLVLCPTRELARQVQQELSSVAQpLGLFSEVFHGGVSYDpQSRALRNGLDILVGTPGRV----IDHLNRGTLRLNECDLIVLDEADEMLSMgFADDVETILDG---LGVDNGEKPQCLLFSATTPPWVKQIGRQYQQDVKSIDATGDDGGSRVANTVRHTAIQcpwgieskkailediiaieiskdmkgvdeifeeSDDEDDEPINEIAAAAIAKKkqESSAVQQKIfgKTIVFTETKRAAdELVSGGVFKSLTA--QALHGDV-------GQKQRDSTLAAFRAGAFNVLVATDVAARGIDIKNVDLVVQFDPPRDVDTYVHRSGRTGRAQTNGVSVLMFSPNQ 505
                 34456667788999999999************************************9886677777766665555447889************9999*99998678888888887766526677899999999999764....5555677777999*********998776588888888765...67899*****************************999777766666655555555555778889**********************999988889999988777766654114556777766689999999888746777777777765..4455544.......35678888899********************************************************9976543 PP

  == domain 2    score: -5.2 bits;  conditional E-value: 3
   TIGR03817 527 ledkvalvheeePdytt.varevteisvveeeeeralgdvevalgevevteqvvgylrrrl...itgevlde 594
                 ++d++a+v++e  d+++ va ++ +++ v+++    ++ v+ a +  +v ++v+  + r++   +t ev  e
  MMETSP1061-20121228|2577_1 709 VADHMAVVEAEVADHMAvVAGDHMAVEAVTSTVADMVAAVAAAAVVDTVVNNVIPVTTREVrtvMTAEVEIE 780
                 57999*****99998752689999999999999999999999999999999999988776311144444433 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.5e-09   1.8e-06     443     520 ..     397     474 ..     380     508 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.5e-09
   TIGR00631 443 nervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDa 520
                   +++v t tk+ a++l +      + ++ lh ++   +r + +  +r+g f+vlv  ++   G+D+ +v lv  +D 
  MMETSP1061-20121228|2577_1 397 FGKTIVFTETKRAADELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRAGAFNVLVATDVAARGIDIKNVDLVVQFDP 474
                 46899**************999999************************************************99996 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   3.7e-07   0.00019     688     733 ..     425     470 ..     418     510 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 3.7e-07
   TIGR00580 688 aiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTii 733
                 +  Hg + +++ ++++ +F  ++f+vLv+T +   Gidi n+  ++
  MMETSP1061-20121228|2577_1 425 QALHGDVGQKQRDSTLAAFRAGAFNVLVATDVAARGIDIKNVDLVV 470
                 568**************************************97544 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.18        91      24      70 ..     173     222 ..     166     259 .. 0.69
   2 ?    9.4   0.0   0.00014     0.072     297     340 ..     431     472 ..     404     512 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.18
   TIGR00595  24 kgksvlvLvPEiaLtaqllkrlk...erfgsevavlhsklsasekkqawr 70 
                 +  s lvL P   L+ q++++l    + +g   +v+h ++s   + +a+r
  MMETSP1061-20121228|2577_1 173 RSVSMLVLCPTRELARQVQQELSsvaQPLGLFSEVFHGGVSYDPQSRALR 222
                 334569999******99999875111557777888888877766665554 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00014
   TIGR00595 297 ttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvl 340
                     +k+ +++l++f+ag  ++l+ t + a+G+d ++v lv+  
  MMETSP1061-20121228|2577_1 431 VG--QKQRDSTLAAFRAGAFNVLVATDVAARGIDIKNVDLVVQF 472
                 44..4456999*****************************9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       323  (0.0787421); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.48
# Mc/sec: 2221.82
//
Query:       MMETSP1061-20121228|2580_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.24s 00:00:00.83 Elapsed: 00:00:00.51
# Mc/sec: 1423.41
//
Query:       MMETSP1061-20121228|2581_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.09s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 1013.92
//
Query:       MMETSP1061-20121228|2582_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-16   59.4   0.2    5.6e-16   57.0   0.1    2.0  1  TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family


Domain annotation for each model (and alignments):
>> TIGR03592  yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.1   1.4e-19   5.6e-16      11     189 ..       3     207 ..       1     209 [. 0.76

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 1.4e-19
   TIGR03592  11 lvirllllplsakqiksmrkmqelqpklkeiqekyk..............edrqk..lq.qemmklykeegvnplaGcLPlLiQmPillaLyavllrsie.........lrkapflwiedlsspdptveatiallaiyilpvlaglttflqqkls.......apkpadpa........qqkimlyimpvmflfmflffpaglllYwvvsnlftilqqlii 189
                 +++r+ llpl++   k++++  +++p+++ i   ++              e+r    ++ + ++ +y+ +++npl  +L  ++Q+P+++   + l + ++         l +++flw+ dl++pdp           + lp+ ag++++++ +++             pa          k +   + v++  ++++ pagl +Y v+s ++t++q   +
  MMETSP1061-20121228|2582_1   3 FMLRASLLPLVIYGAKTAARYAKVAPEIQFIVTLFQndlkkiraegksllEQRHLflQNlETVRTIYNLHNINPLTVFLSPFLQIPFFYYVATDLRKIVNgsdpelaqeLTESSFLWVPDLTDPDP----------WFGLPIAAGAMLYFNVEVAigkrslsG-----PAasqsdfagLLKDLFQTLAVFMPCFAAQSPAGLQIYLVSSFTWTLFQSAAL 207
                 789********************7777777777777333333333335553343333331567899**********************88777773333355677766667***************..........778**************9877555331.....223345688944555557888888999*********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1951.55
//
Query:       MMETSP1061-20121228|2585_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 548.80
//
Query:       MMETSP1061-20121228|2583_1  [L=832]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 1926.58
//
Query:       MMETSP1061-20121228|2584_1  [L=698]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.14s 00:00:00.67 Elapsed: 00:00:00.61
# Mc/sec: 1510.30
//
Query:       MMETSP1061-20121228|2579_1  [L=931]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (931 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.41
# Mc/sec: 2997.12
//
Query:       MMETSP1061-20121228|2586_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.57
# Mc/sec: 1426.85
//
Query:       MMETSP1061-20121228|2588_1  [L=740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.53
# Mc/sec: 1842.87
//
Query:       MMETSP1061-20121228|2587_1  [L=1166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-155  516.2   0.2   1.9e-107  358.0   0.0    2.2  2  TIGR01833 HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase
    5.6e-61  204.2   0.2    2.1e-38  129.9   0.0    4.2  4  TIGR01835 HMG-CoA-S_prok: hydroxymethylglutaryl-CoA synthase
    5.9e-31  105.4   0.4    6.4e-27   92.1   0.2    2.4  2  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II
    1.4e-18   65.1   8.4      1e-13   49.1   0.1    3.3  4  TIGR00748 HMG_CoA_syn_Arc: putative hydroxymethylglutaryl-CoA synthase
    3.7e-06   24.1   2.0     0.0056   13.6   0.1    2.8  3  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
    0.00017   16.2   0.1    0.00024   15.7   0.1    1.1  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
     0.0018   15.1   2.3       0.24    8.1   0.2    2.6  3  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
  ------ inclusion threshold ------
        9.8    2.5  10.4         20    1.5   7.2    1.4  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01833  HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.0   0.0  3.6e-110  1.9e-107       2     238 ..      53     287 ..      52     297 .. 0.96
   2 !  156.2   0.0   6.3e-49   3.2e-46     231     456 ..     348     578 ..     335     579 .. 0.88

  Alignments for each domain:
  == domain 1    score: 358.0 bits;  conditional E-value: 3.6e-110
   TIGR01833   2 pkdvGilalelyfPsqyvdqaelekydgvsaGkytiGlGqtklafvtdredinslsltvvskllerykidlnkiGrlevGtetiidksksvktvlmqlfeesgntdveGidtvnacygGtaalfnainWiesssWdGryalvvagdiavyakGearPtGGagavalliGpnaPivlerglrashmehaydfykPdlaseyPvvdGklslqcylkaldkcyksyskkiekklkksdke 238
                 +k+vGila+e+y+Ps+y+ q+ele++ gvs+Gkyt+GlGq+ l+++ d ed+nsl+ltvv++lle+y+id +++GrlevGtet++dksks kt+lm+lf    nt++eG   vnacygGtaal+na  W es+ WdGrya+vva+dia ya+G arPt Gagava+l+G +aP+v+    ra+h ++++df+kPd + eyP+vdGkls+ cy +al+++y+++++k  ++++++ ++
  MMETSP1061-20121228|2587_1  53 EKNVGILAIEVYTPSTYISQSELEEHSGVSKGKYTLGLGQEGLGICGDAEDVNSLALTVVHSLLEKYQIDPSEVGRLEVGTETLVDKSKSTKTILMDLFPG--NTNMEGATVVNACYGGTAALLNAFLWAESDGWDGRYAIVVAADIAAYARGGARPTSGAGAVAVLVGRDAPLVFSPRERATHAANVWDFFKPDHTVEYPTVDGKLSQVCYYRALEDVYTRFCDKLDENQNNKPND 287
                 69*************************************************************************************************76..***************************************************************************************************************************98776654444 PP

  == domain 2    score: 156.2 bits;  conditional E-value: 6.3e-49
   TIGR01833 231 klkksdkekkfslddldyvvfhsPycklvqkslarlllndflaeass..tdealkeklealstlkledsytdkdlekallkiskelfekkvkasllvatevGnmytaslyaalasllssks.adela.GkrvglfsyGsGlaaslfslrvsedaspgsaldklvaklsdlkkkldkrkklsPeefeealelreqahlk.knftp.egsieklfsGtyyleevdekyrrsykr 456
                 +++ ++ ++  + ++ dy+vfh+Py+klvqks++rl++ d ++      t++++ +  e++ +  ++++ytdk+le +l k s+  ++ k + s  +++ vGn ytas++ +lasl+ +     +l  Gk +++fsyGsG  a+++ l v++  s+  ++  ++a+ ++l ++l++r+k+ P+e  +ale+r ++h +  +++p   ++ +lf+Gtyyl+ +d+ +rr+y+r
  MMETSP1061-20121228|2587_1 348 NNNSNNGDSFSDAKSHDYFVFHAPYNKLVQKSFGRLFFLDARRRYARtgTASEAFHAGEEWLSKPIQETYTDKALEGVLKKESAADYKTKLEDSNKASKLVGNTYTASVFLGLASLIDRAGgRGDLTpGKSIAVFSYGSGALATMYRLSVRDPCSSRFTIP-KMADSLKLMDRLASREKVHPSELDHALETRARMHRAgSPYSPvYPTTGRLFPGTYYLNGIDSSWRRTYSR 578
                 3444455566788999************************9886655367788889999999*******************************************************99752567755***********************9988877777.689999***************************987478**9557889********************97 PP

>> TIGR01835  HMG-CoA-S_prok: hydroxymethylglutaryl-CoA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0   4.2e-41   2.1e-38       1     217 [.      56     276 ..      56     283 .. 0.94
   2 !    6.7   0.0    0.0011      0.56     207     243 ..     342     381 ..     322     403 .. 0.77
   3 !   53.5   0.0   6.7e-18   3.4e-15     240     329 ..     420     509 ..     411     542 .. 0.82
   4 !    8.5   0.1   0.00031      0.16     100     137 ..     887     926 ..     873     933 .. 0.86

  Alignments for each domain:
  == domain 1    score: 129.9 bits;  conditional E-value: 4.2e-41
   TIGR01835   1 iGidkisfftpeyyldlsaLaeargvdpeklskgigqkklavpsideDivtlAasAakailden..dkskidivlvatEsgiDqskaaavyvhrllglspiarsvelkeACygAtaalqlakshvarspd..kkvlviasDiakYeletpgEatqGAgavAlLveadPkllaieeesvlytdDimDFwRPnys.ttalvdGkysveaYlnaleeawkdykkk 217
                 +Gi +i+++tp+ y+  s+L e+ gv  +k++ g+gq++l + +  eD+  lA + ++++l++   d s++  + v+tE+ +D+sk++   +  l+  +++     + +ACyg taal  a    + +    ++ +v+a+Dia Y +  ++ +t GAgavA+Lv +d  l+   +e   + +++ DF++P ++ ++++vdGk s+ +Y  ale++++ +  k
  MMETSP1061-20121228|2587_1  56 VGILAIEVYTPSTYISQSELEEHSGVSKGKYTLGLGQEGLGICGDAEDVNSLALTVVHSLLEKYqiDPSEVGRLEVGTETLVDKSKSTKTILMDLFPGNTNMEGATVVNACYGGTAALLNAFLWAESDGWdgRYAIVVAADIAAYAR-GGARPTSGAGAVAVLVGRDAPLVFSPRERATHAANVWDFFKPDHTvEYPTVDGKLSQVCYYRALEDVYTRFCDK 276
                 69************************************************************988899****************************************************999998875336*************75.789****************99999999999************997257********************999766 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0011
   TIGR01835 207 leeawkdykkkkqlsledfaa...lvfHvPftkmalkalk 243
                  ++a ++ + +++ s+ d ++   +vfH P+ k+ +k+  
  MMETSP1061-20121228|2587_1 342 SDDAANNNNSNNGDSFSDAKShdyFVFHAPYNKLVQKSFG 381
                 345667777888889999887888***********99875 PP

  == domain 3    score: 53.5 bits;  conditional E-value: 6.7e-18
   TIGR01835 240 kalkkilkknkedeedsvkeayeesiaynrevGnlYtgslyLslaslLenae...edltGekigllsYGsGavaeffsgelvegyedvlkkek 329
                 kal+ +lkk+  ++    k+++e+s + ++ vGn+Yt+s++L+lasl+++a    +++ G++i+++sYGsGa+a ++ + + +    +++  k
  MMETSP1061-20121228|2587_1 420 KALEGVLKKESAADY---KTKLEDSNKASKLVGNTYTASVFLGLASLIDRAGgrgDLTPGKSIAVFSYGSGALATMYRLSVRDPCSSRFTIPK 509
                 667777777666655...9999*****************************88888999********************99987766655444 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.00031
   TIGR01835 100 ar..svelkeACygAtaalqlakshvarspdkkvlviasD 137
                 +r    + + AC+g t a+ +a+ ++    +++v+v+a D
  MMETSP1061-20121228|2587_1 887 CRgpNTQTNAACAGTTQAIAMAQDMLISGRAERVVVVAGD 926
                 6655678889****************************98 PP

>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   6.3e-05     0.032      26      93 ..     688     757 ..     671     786 .. 0.84
   2 !   92.1   0.2   1.2e-29   6.4e-27     140     400 ..     877    1154 ..     818    1159 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 6.3e-05
   TIGR03150  26 lagksgikkitkfdasdlkvkiagevkdfdpeey..ldkkearrldrfiqyalaaakealedagleleee 93 
                  +   g +k  ++d+++  +k+ag++ +fd ++   + +  a+ +d  +q a+aa+ eal++agl   ++
  MMETSP1061-20121228|2587_1 688 KKFPDGTSKKVRVDTEEEVIKLAGTLGSFDLTASygVPRGLAETMDIAAQVAVAAGMEALKSAGLVSGKS 757
                 5555677777899*****************87653588999***********************954443 PP

  == domain 2    score: 92.1 bits;  conditional E-value: 1.2e-29
   TIGR03150  140 aagqvsiklglkgpnlavvtACatgthaigeaarlikegeadvmia..g..GaeaaitelgiagFaalkalstrnddpekasrPfdkdrdGFvlgeGagvlvlEelehAkaRgA......kiyaevvGyglsaDAyHitapaeegega..aramk.....aalkdaglkpeevdy...inaHgtstplgdkaEtkaikkvfgeha.kklavsstKsmtGHlLGaaGaveavitvlaleeqvvpptinleepdeecdldyvpnkareakievalsnsfGFGGt 400 
                    +q++   g +gpn+ + +ACa +t+ai+ a +++ +g+a+ +++  g  G+ +++ +   +gF al a +t +   ++a+ Pfdk+r+G ++g G+  lvlE+  +  +R        +i a +++   s+ A+H +a +++  g+  +r ++     + +++a+++++ v +    ++H+ s      +E++a++++fg++  +kl +  tK+ tGH +G   + e v +v  l +q+vpp  n+e +d+ +  d+  +k     +++al  + GFG +
  MMETSP1061-20121228|2587_1  877 GNAQLAQLAGCRGPNTQTNAACAGTTQAIAMAQDMLISGRAERVVVvaGdnGSGETLFPWLGSGFRALGAATT-EAAVKNAALPFDKRRSGMIMGAGGIGLVLETELSSLERQRnssnpfEIKARLLATQYSNSAFHGAALDRKHIGSelKRFLTdieliHGISKAEIATHGVYFsheTCTHASSASSCSGNEVAALRNAFGDDLlSKLLILNTKGYTGHPMGV--SFEDVTAVEVLMRQTVPPIPNYEVKDDYLG-DLKLSKGGAYACRYALRFAAGFGSQ 1154
                  456778889*******************************99655411444666777788889*******988.8899**************************8766655543113333699**************999988866651144443111226799999999999774445789999999999***********985389***************7..69********************99988764.5666777788899999999999975 PP

>> TIGR00748  HMG_CoA_syn_Arc: putative hydroxymethylglutaryl-CoA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.1     2e-16     1e-13       2     201 ..      56     258 ..      55     284 .. 0.90
   2 ?   -0.6   0.0      0.26   1.3e+02     225     244 ..     360     379 ..     351     394 .. 0.81
   3 !   19.5   0.0     2e-07    0.0001     261     326 ..     445     515 ..     431     522 .. 0.84
   4 ?   -3.6   0.3       2.1   1.1e+03     110     144 ..     896     930 ..     892     932 .. 0.83

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 2e-16
   TIGR00748   2 agivgygayipkyrikveeiarvwgddpeaiskgllveekavpgldedtatiaveaarnalkrakidpkdigavyvgseskpyavkptativaeaieatpdltaadlefackagtagiqaalglves.gl.ikyglaigadtaqgapgdaleytaaaggaayiigekn.vvaelegtysyvtdtpdfyrregk.pyprhggrft 201
                 +gi+   +y p+  i   e+    g      + gl  e   + g  ed  ++a+      l + +idp+++g + vg+e+     k t ti+ +      +++ a +  ac  gta++  a+   es g   +y++ + ad a  a g a   t++ag  a ++g+++  v + ++  +++++  df++ +++ +yp   g+++
  MMETSP1061-20121228|2587_1  56 VGILAIEVYTPSTYISQSELEEHSGVSKGKYTLGLGQEGLGICGDAEDVNSLALTVVHSLLEKYQIDPSEVGRLEVGTETLVDKSKSTKTILMDLFPGNTNMEGATVVNACYGGTAALLNAFLWAESdGWdGRYAIVVAADIAAYARGGAR-PTSGAGAVAVLVGRDApLVFSPRERATHAANVWDFFKPDHTvEYPTVDGKLS 258
                 8999*****************999999999999*************************************************************************************999999988343369*************99985.699**********9996788899999***********998637999888875 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.26
   TIGR00748 225 aedfdyavfhqpngkfylka 244
                 a+ +dy vfh p  k+  k+
  MMETSP1061-20121228|2587_1 360 AKSHDYFVFHAPYNKLVQKS 379
                 6789********99987665 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 2e-07
   TIGR00748 261 tpvigntysgatpvglsavldva......epgerilavsygsgagsdafsivvqdaieekrdlapkvaeyik 326
                 +  +gnty+ ++ +gl++ +d a       pg+ i + sygsga +  + + v+d     r   pk+a+ +k
  MMETSP1061-20121228|2587_1 445 SKLVGNTYTASVFLGLASLIDRAggrgdlTPGKSIAVFSYGSGALATMYRLSVRDPCSS-RFTIPKMADSLK 515
                 5689*****************984444445899**********************9875.556788887776 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 2.1
   TIGR00748 110 fackagtagiqaalglvesglikyglaigadtaqg 144
                  ac   t++i +a  ++ sg +   + +  d   g
  MMETSP1061-20121228|2587_1 896 AACAGTTQAIAMAQDMLISGRAERVVVVAGDNGSG 930
                 68999999******999999999998888887665 PP

>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00026      0.13       2     142 ..      55     198 ..      54     222 .. 0.86
   2 ?   -3.5   0.0       1.8   9.1e+02     275     312 ..     446     487 ..     436     488 .. 0.71
   3 !   13.6   0.1   1.1e-05    0.0056     107     143 ..     893     929 ..     879     933 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00026
   TIGR00747   2 kakilsvgsylPekvltnadlekmvdtsDeWivtRtGikeRriAaddetssslgveaakkAieaAklskddidliivattspdlafPsaaalvqakL.gikdipafDlsAaCaGflYalsvakayvesGky..ktvLvvgaekl 142
                 +++il++  y P+  ++  +le++   s    +   G +   i +d+e + sl+++  +  +e+ +++++++  + v t +   +  s+ + + +   g +++ +  +  aC G + al  a  + es     ++++vv+a+  
  MMETSP1061-20121228|2587_1  55 NVGILAIEVYTPSTYISQSELEEHSGVSKGKYTLGLGQEGLGICGDAEDVNSLALTVVHSLLEKYQIDPSEVGRLEVGTETLVDKSKSTKTILMDLFpGNTNMEGATVVNACYGGTAALLNAFLWAESDGWdgRYAIVVAADIA 198
                 6789************************99999999*********************************************9888888777766654499999999******99999999988888886542256777777754 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.8
   TIGR00747 275 ekygntsAasiplaldelle....egkikkgdlllleafGgG 312
                 +  gnt  as+ l l+ l++     g++ +g+ + + ++G+G
  MMETSP1061-20121228|2587_1 446 KLVGNTYTASVFLGLASLIDraggRGDLTPGKSIAVFSYGSG 487
                 4489*******9999988762222467777777777777776 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 1.1e-05
   TIGR00747 107 DlsAaCaGflYalsvakayvesGkyktvLvvgaekls 143
                   +AaCaG + a+++a++++ sG ++ v+vv+ +  s
  MMETSP1061-20121228|2587_1 893 QTNAACAGTTQAIAMAQDMLISGRAERVVVVAGDNGS 929
                 678*****************************99765 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.6e-07   0.00024     197     286 ..     889     987 ..     875     991 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.6e-07
   TIGR02813 197 GmncvvdaacaGslaalrlalselvegrse..vmitGGvctdns..pfmymsfsktpafttnediq....pfdidskGmmiGe.GiGmvalkrledaer 286
                 G n   +aacaG+  a+ +a   l+ gr+e  v+++G   + ++  p++   f    a tt+  ++    pfd    Gm++G  GiG+v    l   er
  MMETSP1061-20121228|2587_1 889 GPNTQTNAACAGTTQAIAMAQDMLISGRAErvVVVAGDNGSGETlfPWLGSGFRALGAATTEAAVKnaalPFDKRRSGMIMGAgGIGLVLETELSSLER 987
                 778999***********************95445566444444333888889*********988866666***********9736**998888877777 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0021       1.1      22      94 ..     105     177 ..      98     200 .. 0.78
   2 ?   -3.9   0.0       2.1   1.1e+03     102     122 ..     736     756 ..     733     765 .. 0.74
   3 !    8.1   0.2   0.00046      0.24      75     109 ..     890     925 ..     878     971 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0021
   TIGR01930  22 edLlaavikelleragldpekidevilGnvlqageqaniaReaala.aglpesvpaltvnrvCaSglqAvalaa 94 
                 ++L+ +v+++lle++++dp+++  + +G+ +   +  + ++++++     ++++++ tv ++C  g +A+ +a 
  MMETSP1061-20121228|2587_1 105 NSLALTVVHSLLEKYQIDPSEVGRLEVGTETLVDKS-KSTKTILMDlFPGNTNMEGATVVNACYGGTAALLNAF 177
                 67999***********************98888776.344444433034467799*************998875 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2.1
   TIGR01930 102 advvvaGGvEsmSrvpillka 122
                 a+v+va+G+E + ++ +++ +
  MMETSP1061-20121228|2587_1 736 AQVAVAAGMEALKSAGLVSGK 756
                 689999999998776665555 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00046
   TIGR01930  75 paltvnrvCaSglqAvalaaqkikaGead.vvvaGG 109
                 p ++ n +Ca   qA+a+a +++ +G+a+ vvv++G
  MMETSP1061-20121228|2587_1 890 PNTQTNAACAGTTQAIAMAQDMLISGRAErVVVVAG 925
                 678899****************99998872444444 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   7.2      0.04        20     203     308 ..     273     377 ..     264     380 .. 0.46

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.04
   TIGR01651 203 lgddeesedeedtdddqpredeqeeeg.eeeeegdeasaaeeaeaaeeeees.geeeaaeaddddlsdeddedaetpgeakrpdrpftdlneevdykvftsafdeivd 308
                 ++d+ +++++++ +d + ++++ +  + +   + + +s++ e++ +  e +s ge  ++   + + + ++d+ a    +  ++ + f+d ++  dy vf + ++++v+
  MMETSP1061-20121228|2587_1 273 FCDKLDENQNNKPNDARLKKQSTSSSStSTSTSTSTSSPTREEKKTGTEDDSkGESSSSSNRNSNSNSNSDDAA--NNNNSNNGDSFSD-AKSHDYFVFHAPYNKLVQ 377
                 55554555555555555555544444303334444444444444433333330332222222222222222222..2333444444444.47889****999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.69u 0.17s 00:00:00.86 Elapsed: 00:00:00.56
# Mc/sec: 2699.99
//
Query:       MMETSP1061-20121228|2589_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 2243.81
//
Query:       MMETSP1061-20121228|2590_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 1787.85
//
Query:       MMETSP1061-20121228|2592_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.8   1.2      0.017   12.2   0.8    1.2  1  TIGR02599 TIGR02599: Verrucomicrobium spinosum paralogous family TIGR02599


Domain annotation for each model (and alignments):
>> TIGR02599  TIGR02599: Verrucomicrobium spinosum paralogous family TIGR02599
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.8   4.1e-06     0.017     171     272 ..      69     167 ..      52     178 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.1e-06
   TIGR02599 171 perkRfRLmefrqPaEklklykatlrfaletaaskadlleWfqtalaaeseprvvAeNilalvisPkvpekgaassegvsekkvslapdYaYds..rqvqsaaa 272
                 + +k  R  e++q   +++  +++++ + ++a+++a++++ +++ +++ s+  +vA   la+ i P + + ++   +  s   +  a +Y++d   +++++  +
  MMETSP1061-20121228|2592_1  69 RRKKHDRYFELQQQKQQNRNQAQEQTQTQTQAQAQAQATKPYEATMKSISKS-PVALLALACCIPPAICAANTGGIKSSSC--ACQALAYNFDIdcSDQTN--M 167
                 3333447888888888888777776667777777899******999999999.****************777766666554..455556666653133332..2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       393  (0.0958069); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1214.98
//
Query:       MMETSP1061-20121228|2591_1  [L=992]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   11.1  36.2      0.014   10.9  12.5    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.36    6.2  31.7      0.027    9.9  10.1    2.2  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        6.2    2.9  28.5      0.004   13.5   8.5    2.1  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9  12.5     1e-05     0.014     684     793 ..     422     531 ..     403     541 .. 0.61
   2 ?    5.8   7.0   0.00035      0.48     353     480 ..     723     849 ..     714     862 .. 0.40

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1e-05
   TIGR02168 684 leeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaei 793
                   ee+e+l e +++l++e  +l+++l +++ee ++++++l ++ +++++l  +l + +++v ++++rl ++++el+++++ +e l+e ++ea++++++ e+  e+l+a  
  MMETSP1061-20121228|2591_1 422 QHEELEKLRELLQNLKAENIALKSQLGNMTEEEKQVQQQLGQTVTEITALTVDLGAQRQQVLEAKNRLLEARAELKSQKDTKEVLTELISEAQQTKDAIESATETLQAAQ 531
                 34556666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666665544 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.00035
   TIGR02168 353 lesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalq 480
                 +e++++++++a  +++++e+++++l +e++elr++ +++e + +sl a   + ++       +++++k+   ++ +++ e+++++ ++q++  e  +  +++++e +rl+ ++e +e ++++a +a q
  MMETSP1061-20121228|2591_1 723 VEEMKKKAKRADGAARDAEAASSKLAAEADELRADADKAEANYRSLVAAADEKKK-GRFGGGKKKKMKEGADQAGRDAAEIKKHFMAVQGQALEAATIAAQTRSEADRLRDEAEAAELQMAAAASAQQ 849
                 3333333333333333333333333333333333333333333333333322111.111122223333333334444444444444444444444444444444444444444444444443333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  10.1     2e-05     0.027     680     788 ..     422     530 ..     406     542 .. 0.37
   2 ?    1.9   6.3    0.0052       7.1     310     423 ..     722     841 ..     715     857 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 2e-05
   TIGR02169 680 lrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleae 788
                  +e+le+L + l++l++e   ++++l +++++ ++ ++++++   e+ +l  +  ++++++ e +++l e   el+ +k+ ++ l + i+e ++++ +++ a e l+a 
  MMETSP1061-20121228|2591_1 422 QHEELEKLRELLQNLKAENIALKSQLGNMTEEEKQVQQQLGQTVTEITALTVDLGAQRQQVLEAKNRLLEARAELKSQKDTKEVLTELISEAQQTKDAIESATETLQAA 530
                 2333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.0052
   TIGR02169 310 aiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelke......eleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeel 423
                  ++e ++++++a+   + aea  +kl++e++el+ +  + +++ ++l ++ +e+k+      + +++++ +++   +aae+++++++++ +  ++     + + e drl +e++ +e ++
  MMETSP1061-20121228|2591_1 722 IVEEMKKKAKRADGAARDAEAASSKLAAEADELRADADKAEANYRSLVAAADEKKKgrfgggKKKKMKEGADQAGRDAAEIKKHFMAVQGQALEAATIAAQTRSEADRLRDEAEAAELQM 841
                 455555566666666666666666666666666666666666666666655555552222223344444555555555555555555554433333334444445566655555444443 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   8.5   2.9e-06     0.004     366     487 ..     414     532 ..     401     545 .. 0.80
   2 ?   -4.8   5.7         1   1.4e+03     208     328 ..     727     849 ..     717     853 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.9e-06
   TIGR03185 366 iplllsdselaqlevliekvkrekqdaksqLlkeleeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkelkektkqkedaeelervikladk 487
                  + ++s+s+ ++le+l e +++ k  ++ +L ++l ++ ee +++++++ +     ++ +l+  l+ + ++v +++  + e++++l+++k++ e l++++ e +++k   e + +++++a+ 
  MMETSP1061-20121228|2591_1 414 ATYEVSNSQHEELEKLRELLQNLKA-ENIALKSQLGNMTEEEKQVQQQLGQ--TVTEITALTVDLGAQRQQVLEAKNRLLEARAELKSQKDTKEVLTELISEAQQTKDAIESATETLQAAQA 532
                 5567788888888888888887777.7778888888888888888887765..456789999999999999999999999999999999999999999998888888888888888888875 PP

  == domain 2    score: -4.8 bits;  conditional E-value: 1
   TIGR03185 208 eseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkf..eseGgelaeereelerqqkeleaklkavraelrelaadllPLlliknllssvkaqlrkeeqakqnqliqevleer 328
                 +++ +  +   ++ e   ++la+e ++lr  +++ae +++sl  ++  +++G     +++++++   ++   +++++++ + +  ++l  + i+++  s  + lr+e +a + q++  + +++
  MMETSP1061-20121228|2591_1 727 KKKAKRADGAARDAEAASSKLAAEADELRADADKAEANYRSLVAAAdeKKKGRFGGGKKKKMKEGADQAGRDAAEIKKHFMAVQGQALEAATIAAQTRSEADRLRDEAEAAELQMAAAASAQQ 849
                 455555556666677777889999999999999999999998776611456777777888999999999999999999999999999999999999999999999999999999887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       369  (0.0899561); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.69u 0.16s 00:00:00.85 Elapsed: 00:00:00.79
# Mc/sec: 1657.38
//
Query:       MMETSP1061-20121228|2593_1  [L=1074]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.1e-292  968.2   0.0   8.5e-187  620.9   0.0    2.8  2  TIGR00763 lon: ATP-dependent protease La
    1.1e-30  104.6   9.7      1e-29  101.3   0.1    3.1  3  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
    1.7e-22   77.6   0.1    8.7e-20   68.6   0.0    2.4  2  TIGR00764 lon_rel: putative ATP-dependent protease
    7.3e-22   75.5   0.1    8.1e-21   72.0   0.0    2.1  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
    3.9e-13   46.4   0.0    6.3e-13   45.7   0.0    1.2  1  TIGR02653 Lon_rel_chp: conserved hypothetical protein
    1.2e-09   35.3   0.2    1.1e-08   32.1   0.0    2.1  2  TIGR00416 sms: DNA repair protein RadA
    1.8e-08   30.9   0.3    6.9e-08   29.0   0.0    1.9  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    2.2e-06   24.6   0.1    4.3e-06   23.6   0.0    1.4  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.6e-05   21.9   0.0    4.2e-05   20.5   0.0    1.7  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    1.7e-05   21.1   0.1    2.6e-05   20.5   0.1    1.2  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
    1.9e-05   22.5   0.1    6.5e-05   20.8   0.0    1.9  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    2.9e-05   20.6   0.0      0.011   12.2   0.0    2.2  2  TIGR00368 TIGR00368: Mg chelatase-like protein
    8.9e-05   19.2   0.0    0.00015   18.4   0.0    1.2  1  TIGR03689 pup_AAA: proteasome ATPase
    0.00015   18.0   0.0    0.00029   17.1   0.0    1.4  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    0.00039   16.9   0.1     0.0007   16.1   0.0    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
     0.0013   15.7   0.0     0.0026   14.7   0.0    1.4  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
     0.0016   14.3   0.0     0.0029   13.4   0.0    1.3  1  TIGR01448 recD_rel: helicase, RecD/TraA family
     0.0044   14.7   0.0     0.0093   13.7   0.0    1.4  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
     0.0094   13.3   0.1      0.029   11.7   0.0    1.8  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0099   13.4   0.5      0.027   12.0   0.0    2.0  2  TIGR00017 cmk: cytidylate kinase
  ------ inclusion threshold ------
       0.01   12.9   1.9      0.024   11.7   0.0    2.2  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      0.011   13.6   9.6       0.36    8.6   0.0    3.1  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
      0.014   12.5   0.0      0.026   11.6   0.0    1.4  1  TIGR02880 cbbX_cfxQ: CbbX protein
      0.093   10.2   2.8        0.1   10.1   0.1    2.1  2  TIGR01351 adk: adenylate kinases
       0.32    7.2   9.1       0.53    6.5   6.3    1.2  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  620.9   0.0  5.2e-189  8.5e-187       2     527 ..     148     740 ..     147     743 .. 0.94
   2 !  343.3   0.0  4.4e-105  7.2e-103     526     795 .]     798    1071 ..     793    1071 .. 0.95

  Alignments for each domain:
  == domain 1    score: 620.9 bits;  conditional E-value: 5.2e-189
   TIGR00763   2 llpvrrkvlfPgfilkivvkdeksiklikealkk...kqkyllaflkkdkeeeed..........vieeeedvykvgvlaqilelvklkde...kskketlkvvleglrrikikelve................................................keevlvvkveelk.eeelekddeevkalseeiletlkeliklsklfreqvetlkalekleepakladlvaaslelke.veekqevleevnvekRLkkvlellkkelelaklqekiakkveeklekeqreylLkeqlkaikkElGeekdkkdelieklkekleelk.lpeevlkviekeleklelleasssefsvtrnYldwltdlPwgkvskenldlkrakeiLdedHyglkkvKeRilEylavkklrkklkgkilclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenPlillDEiDKlgssvrGdPasaLLEvLDpeqNakFlDhYldvpiDlskVlfvataNsidtiPepLldRmEvielsgYveeeKleiakkyLipkaleeaglkkeeve 527
                 +lpv++++lfPg++++++++++++i+++++ +++   ++ y+ afl+k++ +  +          vi++ +d+y+vg++aqi++l++ +     +s +++ +  ++g  r + + + +                                                + +v++++  +l+   ++++ d++++al++eil+t++e++++++lfre+v+ ++   + ++p++lad++a+++++ +  e+ q+vlee + e RL+k+l ll+ke e++klq++i++kveek++++qr+y+L+eqlk ikkElG+e+d+k+++iek++++l + + +peev k+ie elekl+ le +sse+svtrnYldwl  +Pw+ +s+en+d++ a+++L++dHygl++vK+ ilE++av+kl+++++gki+cl+GPPG GKtS+aksiA+al+r+f r+s+GGl+ v+eikGHRrtYvGa+PGkiiqglkk++t nP++l+DEiDKlg+s++GdPasaLLEvLDp qN++FlDhYld  +D+skVlf++taN++++iPepLldRmEvi+lsgY   eK++i ++yL+pk ++++gl  e+ve
  MMETSP1061-20121228|2593_1 148 ALPVTNRPLFPGVVTSVTLTEPATIDALEKLQREnegNNVYISAFLRKKNPTGVSeggvllptpeVITDPADLYSVGTFAQIHRLTRGVGSgsiSSASASASNGVSGGGRGSNNGFADdpdagagagagaggdhsssseedggsaasvlllahrrvnlmsvdslgpPIDVTISHWPRLDyTGPMSSPDDTIRALINEILSTIREVAQINPLFRENVQFFSGRLDANDPYRLADFAASVCSAGSsPEDLQAVLEEKDAEMRLHKALVLLSKEREVSKLQQEIQSKVEEKMSESQRRYFLTEQLKSIKKELGMERDDKEAVIEKYRKQLANYSdIPEEVNKTIEAELEKLSSLEMNSSEYSVTRNYLDWLCGVPWNVTSDENFDIQDARQVLNRDHYGLDDVKDTILEFIAVGKLKGSVQGKIICLSGPPGTGKTSIAKSIAEALGREFYRFSVGGLSNVSEIKGHRRTYVGAMPGKIIQGLKKTGTFNPVVLIDEIDKLGHSHQGDPASALLEVLDPSQNSSFLDHYLDEAVDISKVLFMCTANELERIPEPLLDRMEVIRLSGYDVPEKVAIGEQYLVPKSMRDNGLLIEKVE 740
                 79*********************999988766551115788999**9999998777899999999******************998765431113445556667888889999888889********************************************988666777777777766799999**************************************************99886515789*******************************************************************************99988**************************************************************************************************************************************************************************************************************************************************************9888875 PP

  == domain 2    score: 343.3 bits;  conditional E-value: 4.4e-105
   TIGR00763  526 veisdealkelikkYtreaGVRnLekqiekilRkaalklveekekkkeaeeekeeaelkkeekesveideenlkkylgkpvfesekldeetkv..GvvmGLawtsvGGsvlyiEttlveg.........kkgeleltGqLgdvmkESaqialtyvraileekeienkffekadihlHvPeGatpKDGPSAGvtlvtallSllldkkvrkdvamtGEltLtGkvlpigglkeKviaAkrsgiktiilPeknrrdleelpenvkedleillvkeleevlekaf 795 
                  + i ++a+++l++ Y+reaGVRnL k i++i+Rk al++v e+e ++        +++++ ++es +++eenl++y+gk++f+s++l+++++   G+vmGLa+t++GGs+lyiEt  ++          + g+l+ tG+L dvmkES+qia+t++r++l++    n+ff+k+dih+HvPeGatpKDGPSAG+++vt++lSl+l+k++r+d+amtGE++LtGkvl +gg+keK++  +r+gik iilP++nrrd++e+p+++ke+l++++++++e v+e++f
  MMETSP1061-20121228|2593_1  798 IGIAKDAIESLVRWYAREAGVRNLSKYIDRITRKLALQVVAEGEGTE-------LTKKSTRKSESWTVTEENLEDYVGKHIFTSDRLYDKDPLpdGIVMGLAYTAMGGSALYIETQGIKRglddngkprGGGTLKATGNLMDVMKESSQIAYTVARSRLADIDATNDFFDKTDIHMHVPEGATPKDGPSAGIAMVTSMLSLALEKPIRNDLAMTGEVSLTGKVLAVGGIKEKIMGGRRAGIKSIILPNANRRDYDEIPDYLKEGLDVHFAENYETVYETVF 1071
                  67899***********************************9986654.......44566778899***********************9986334********************99988899999998899**************************************************************************************************************************************************987 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   2.5     0.067        11      82     125 ..     420     463 ..     389     495 .. 0.74
   2 ?    3.1   0.0     0.034       5.5     176     197 ..     567     588 ..     553     596 .. 0.80
   3 !  101.3   0.1   6.3e-32     1e-29     386     614 ..     828    1070 ..     796    1071 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.067
   TIGR02903  82 akrtveeeierkvekklverqekyleeirlqvlkekkgsensst 125
                     +++ei+ kve+k+ e q  y+   +l+ +k++ g e  + 
  MMETSP1061-20121228|2593_1 420 EVSKLQQEIQSKVEEKMSESQRRYFLTEQLKSIKKELGMERDDK 463
                 4456799*****************99999999999999886543 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.034
   TIGR02903 176 qhiilyGppGvGkttaarlale 197
                 + i l GppG Gkt++a+ + e
  MMETSP1061-20121228|2593_1 567 KIICLSGPPGTGKTSIAKSIAE 588
                 457799**********997665 PP

  == domain 3    score: 101.3 bits;  conditional E-value: 6.3e-32
   TIGR02903  386 ieGrkavniladvyglvlykkaealkeedkvkitvddvkevvsisrlspyeklkaedkaevGkvfGlGvsgylGsvleieavaf......eakekGkGtvrfndtaGsmakdsvfnaasvir.kitdkdlkd.....ydihvnviGGG.ridGpsaGaaitlvilsalldkpirqdvaitGeislrGkikpvGGifekiyGakrkgiktvvipeenlkd...vpqgl.kdievkavktieelleiv 614 
                  i  + a++++a++ g  l kk+  ++++++ ++t +++++ v+   ++      +++ ++ G v+Gl  +   Gs+l ie++ +      + k +G Gt++       + k+s   a +v r +++d+d  +      dih+ v  G    dGpsaG a++  +ls  l+kpir+d+a+tGe+sl Gk+ +vGGi eki G +r+gik +++p+ n++d   +p  l ++++v ++++ e + e v
  MMETSP1061-20121228|2593_1  828 ITRKLALQVVAEGEGTELTKKS--TRKSESWTVTEENLEDYVGKHIFTSDRLYDKDPLPD-GIVMGLAYTAMGGSALYIETQGIkrglddNGKPRGGGTLKATGNLMDVMKESSQIAYTVARsRLADIDATNdffdkTDIHMHVPEGAtPKDGPSAGIAMVTSMLSLALEKPIRNDLAMTGEVSLTGKVLAVGGIKEKIMGGRRAGIKSIILPNANRRDydeIPDYLkEGLDVHFAENYETVYETV 1070
                  5566799***********9997..56999**************99888888888777766.*******************98762222223566788899988888888999999999999867999987653322359*****8665168******************************************************************97444687762579999999999988776 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0037      0.61      35      64 ..     564     593 ..     550     611 .. 0.84
   2 !   68.6   0.0   5.3e-22   8.7e-20     446     567 ..     917    1044 ..     780    1073 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0037
   TIGR00764  35 kqkrnvlliGePGvGksmlakamaellpke 64 
                  q + + l G PG+Gk+ +ak++ae l +e
  MMETSP1061-20121228|2593_1 564 VQGKIICLSGPPGTGKTSIAKSIAEALGRE 593
                 566678899****************99876 PP

  == domain 2    score: 68.6 bits;  conditional E-value: 5.3e-22
   TIGR00764  446 askeeGkiivtgklgeiakeavlnvsalikkykge.....d.iskkdihiqflqtyegveGdsasisvatavisaleeiPvkqdvaltGslsvrGevlpvGGvtekieaaieaGikkviiPksnekdv 567 
                  + +  G++ +tg+l ++ ke+ + + ++ +   ++     d  +k+dih+   +     +G sa i+++t+++s  +e P++ d+a+tG +s+ G+vl+vGG++eki    +aGik +i+P++n +d 
  MMETSP1061-20121228|2593_1  917 KPRGGGTLKATGNLMDVMKESSQIAYTVARSRLADidatnDfFDKTDIHMHVPEGATPKDGPSAGIAMVTSMLSLALEKPIRNDLAMTGEVSLTGKVLAVGGIKEKIMGGRRAGIKSIILPNANRRDY 1044
                  3345688999***********9999998887666566666425799******************************************************************************9985 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.16        27      89     108 ..     569     588 ..     558     596 .. 0.80
   2 !   72.0   0.0   4.9e-23   8.1e-21     394     507 ..     929    1043 ..     800    1069 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.16
   TIGR02902  89 viiyGppGvGktaaarlvle 108
                 + + GppG Gkt+ a+ + e
  MMETSP1061-20121228|2593_1 569 ICLSGPPGTGKTSIAKSIAE 588
                 4578*********9987655 PP

  == domain 2    score: 72.0 bits;  conditional E-value: 4.9e-23
   TIGR02902  394 gsskevkrkssikgsvenv.lavlksvldinlkdydihinfp.ggipvdGpsaGvaiavaiysalkkvpidnkvaltGeislnGlvkpvGGvsskieaakkaGakkviipkenyqe 507 
                  +    +k+ s+i  +v    la +   ++   ++ dih++ p g++p dGpsaG+a++ ++ s   + pi n  a+tGe+sl+G+v +vGG+++ki   ++aG+k +i+p  n ++
  MMETSP1061-20121228|2593_1  929 NLMDVMKESSQIAYTVARSrLADIDA-TNDFFDKTDIHMHVPeGATPKDGPSAGIAMVTSMLSLALEKPIRNDLAMTGEVSLTGKVLAVGGIKEKIMGGRRAGIKSIILPNANRRD 1043
                  44445555555555554331444444.35567889*****9835689****************************************************************99765 PP

>> TIGR02653  Lon_rel_chp: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   3.9e-15   6.3e-13     521     668 ..     920    1066 ..     853    1071 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 3.9e-15
   TIGR02653  521 GsGklkvsGlGsetaakesikvafdylkgnlkrisasak.fsekdyhlevvdllntgvsteaslaalialisallkrsvqeqmvilGeltlgGvvkavedlaeslqlaldsGakrvllplssasdiatvpaelfskfqisfysdpvdav 668 
                  G G lk +G      +kes + a+   +++l  i a+   f+++d h++v +  + + +  a++a++ +++s +l++++++++++ Ge++l G+v av  + e++     +G k ++lp ++++d+ ++p  l + +++ f ++  ++v
  MMETSP1061-20121228|2593_1  920 GGGTLKATG-NLMDVMKESSQIAYTVARSRLADIDATNDfFDKTDIHMHVPEGATPKDGPSAGIAMVTSMLSLALEKPIRNDLAMTGEVSLTGKVLAVGGIKEKIMGGRRAGIKSIILPNANRRDYDEIPDYLKEGLDVHFAEN-YETV 1066
                  445555555.455689******************9998626899**********************************************************************************************987554.4444 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.26        43      90     120 ..     562     592 ..     545     610 .. 0.83
   2 !   32.1   0.0   6.8e-11   1.1e-08     354     435 ..     960    1042 ..     954    1052 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.26
   TIGR00416  90 GivkGsliliGGdPGiGkstlllqvaaqlak 120
                 G v+G +i + G PG Gk+ +   +a  l +
  MMETSP1061-20121228|2593_1 562 GSVQGKIICLSGPPGTGKTSIAKSIAEALGR 592
                 7799**************9987777766655 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 6.8e-11
   TIGR00416  354 akqdvflnvaGGvk.veepavdlalvialvssfrdrkldqklvilGevglaGeirevssleerlkeaaklGfkkaivPkansd 435 
                  +k d++++v  G    + p++ +a+v +++s   ++++ ++l++ Gev+l+G+++ v  ++e++    + G k +i+P+an  
  MMETSP1061-20121228|2593_1  960 DKTDIHMHVPEGATpKDGPSAGIAMVTSMLSLALEKPIRNDLAMTGEVSLTGKVLAVGGIKEKIMGGRRAGIKSIILPNANRR 1042
                  5789999997665516789************************************************************9975 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   4.2e-10   6.9e-08     439     605 ..     521     690 ..     510     694 .. 0.74

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 4.2e-10
   TIGR02639 439 svssddkekLknlekeLkkkifGqdeaiealvkaikrsraGlkeenkPvgsflfvGptGvGktelakqLaeelgvellrfDmseymekhtvsrliGsPpGyvGfeeGGlLteavrknP..yavlLlDeiek...ahp.DilnilLqvmDyat...LtDns.Grkadfrnvilimtsn 605
                 +v sd++  +++  + L++  +G d++ +++ + i   +   + + k       +Gp G Gkt +ak++ae+lg e+ rf +        vs + G    yvG    G++ ++++k+   + v+L+Dei+k   +h+ D  + lL v+D ++   + D+     +d  +v+++ t+n
  MMETSP1061-20121228|2593_1 521 NVTSDENFDIQDARQVLNRDHYGLDDVKDTILEFIAVGKLKGSVQGK---IICLSGPPGTGKTSIAKSIAEALGREFYRFSVGGLS---NVSEIKGHRRTYVGAMP-GKIIQGLKKTGtfNPVVLIDEIDKlghSHQgDPASALLEVLDPSQnssFLDHYlDEAVDISKVLFMCTAN 690
                 56778888888888888888888888888888888765532222222...34579**************************99876...69************765.677789999753378********9544454689999****996541113344314455666666665655 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   2.6e-08   4.3e-06      49     164 ..     532     649 ..     522     659 .. 0.68

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 2.6e-08
   TIGR01241  49 ekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsis..G.sdfvem......fvGvGasrvrDlfeqakknaPciifiDeiDavGrkr 164
                 +  +v  +d  G+d++k+ ++e++   k        G+   k + l+GpPGtGkt +ak++a   g+ f++ s  G s+  e+      +vG    ++   ++++    P +++iDeiD +G++ 
  MMETSP1061-20121228|2593_1 532 DARQVLNRDHYGLDDVKDTILEFIAVGKLK------GSVQGKIICLSGPPGTGKTSIAKSIAEALGREFYRFSvgGlSNVSEIkghrrtYVGAMPGKIIQGLKKTGTFNP-VVLIDEIDKLGHSH 649
                 556677777778888888877777654433......445556699******************99****76542163333333222222555555566666666666666.6789****999875 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   2.6e-07   4.2e-05       5      67 ..     540     603 ..     536     616 .. 0.84
   2 ?   -4.1   0.0       8.4   1.4e+03     211     245 ..     934     968 ..     931     991 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2.6e-07
   TIGR00635   5 efiGqekvkeklqlfikaakkrkealdhvl.lyGPPGlGkttlakiiakelgvklkitsgpale 67 
                 ++ G ++vk+++  fi   k +  +   ++ l+GPPG Gkt++ak ia+ lg +    s + l+
  MMETSP1061-20121228|2593_1 540 DHYGLDDVKDTILEFIAVGKLKGSVQGKIIcLSGPPGTGKTSIAKSIAEALGREFYRFSVGGLS 603
                 7889999**************999988765499******************9987766666555 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 8.4
   TIGR00635 211 vkeekvinkkiakealeklkvdelGldelDrklLk 245
                 +ke+++i  ++a++ l+ ++  +  +d++D+++  
  MMETSP1061-20121228|2593_1 934 MKESSQIAYTVARSRLADIDATNDFFDKTDIHMHV 968
                 67888999999999999999999999999988754 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   1.6e-07   2.6e-05     436     679 ..     413     644 ..     377     651 .. 0.59

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.6e-07
   TIGR03345 436 ellereeelgaeeeerlaeleeelaaleeelaalearwekekelveeikelrekleeeeeeeaeeeealeaelae.......leaelaelqgeeplvsaevdeevvaevvadW.tGiPvgrlvkdeiekvleleekleervvGqdealeaiaerirtarAgledpkkPlgvFllvGpsGvGktetalalAellyGgeqnlitinmsefqeaHtvstLkGsPPGYvGyGeGGvLteAvRrkPys.vvLLDevek 679
                  ll++e+        ++++l++e++   ++++++ ++ ++   l e++k+++++l  e+++++   e+++++la+       +++++++  ++ + ++++ +e  v+    dW  G+P + +++de+  +++ ++ l++   G d+  ++i e i + + + + ++k   +  l Gp G+Gkt  a ++Ae+l      + +  +s      +vs++kG    YvG   G ++    +   +  vvL+De++k
  MMETSP1061-20121228|2593_1 413 VLLSKER--------EVSKLQQEIQ---SKVEEKMSESQRRYFLTEQLKSIKKELGMERDDKEAVIEKYRKQLANysdipeeVNKTIEAELEKLSSLEMNSSEYSVTRNYLDWlCGVPWN-VTSDENFDIQDARQVLNRDHYGLDDVKDTILEFIAVGKLKGSVQGK---IICLSGPPGTGKTSIAKSIAEALGREFYRFSVGGLS------NVSEIKGHRRTYVGAMPGKIIQGLKKTGTFNpVVLIDEIDK 644
                 2222222........2333332222...222222233333334555555555555443333333333333333330000000233333222222334445556677777788857***86.89999*****************999999999999877654444443...7789******************94333444444555......68999999999999888887777666666644999999998 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     4e-07   6.5e-05       2      28 ..     568     594 ..     567     612 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 4e-07
   TIGR02173   2 iivisGpPGsGkttvakilaeklslkl 28 
                 ii +sGpPG+Gkt++ak +ae l+ ++
  MMETSP1061-20121228|2593_1 568 IICLSGPPGTGKTSIAKSIAEALGREF 594
                 799*******************98664 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0045      0.74     211     233 ..     566     588 ..     523     594 .. 0.71
   2 !   12.2   0.0   6.5e-05     0.011      56     143 ..     960    1045 ..     934    1073 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0045
   TIGR00368 211 ghnllllGPPGsGktllakrlqg 233
                 g  + l GPPG+Gkt +ak +  
  MMETSP1061-20121228|2593_1 566 GKIICLSGPPGTGKTSIAKSIAE 588
                 3467899**********999865 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 6.5e-05
   TIGR00368   56 PakrivinlaPadlkkeGgrfdlpiaigilaaseqldakkldeylllgelaldGklravkgvlpaiaaakkselkfiivakenaeeas 143 
                   +  i + +     +k+G++  +++  ++l     l++   +++ + ge++l+Gk+ av g+   i+  ++ ++k ii+++ n  +  
  MMETSP1061-20121228|2593_1  960 DKTDIHMHVPEGATPKDGPSAGIAMVTSMLSLA--LEKPIRNDLAMTGEVSLTGKVLAVGGIKEKIMGGRRAGIKSIILPNANRRDYD 1045
                  455566666666778888888888888887665..4444456789************************************9987654 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   9.2e-07   0.00015     217     299 ..     567     643 ..     561     662 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 9.2e-07
   TIGR03689 217 kGvllyGPPGcGktliakavanslaekvae.dgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemd 299
                 k + l GPPG+Gkt iak++a++l+++ +  ++   s   +ikG      yvG    +i     +  +k  + +Pvv ++de+d
  MMETSP1061-20121228|2593_1 567 KIICLSGPPGTGKTSIAKSIAEALGREFYRfSVGGLSNVSEIKGHR--RTYVGAMPGKII----QGLKKTGTFNPVV-LIDEID 643
                 557899********************99987778888888999976..567777666653....3445555666653.456666 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.8e-06   0.00029     212     283 ..     566     645 ..     537     708 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.8e-06
   TIGR01243 212 pkgvllygppgtgktllakavaneagayfi..ai....ngpeims...kyygeseerlreifkeaeenapsiifideidai 283
                  k + l gppgtgkt +ak++a+  g  f+  ++    n  ei      y+g    ++ + +k++    p +++ideid +
  MMETSP1061-20121228|2593_1 566 GKIICLSGPPGTGKTSIAKSIAEALGREFYrfSVgglsNVSEIKGhrrTYVGAMPGKIIQGLKKTGTFNP-VVLIDEIDKL 645
                 5668889999999999999999999988873334222233455432224666666666666666666555.4567777765 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.2e-06    0.0007     309     336 ..     563     590 ..     550     655 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.2e-06
   TIGR03922 309 aqrskHlllaGPPGtGkttiArvvakiy 336
                  ++ k + l GPPGtGkt+iA+ +a+ +
  MMETSP1061-20121228|2593_1 563 SVQGKIICLSGPPGTGKTSIAKSIAEAL 590
                 567788899***********99998765 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.6e-05    0.0026     157     190 ..     567     600 ..     544     659 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.6e-05
   TIGR01242 157 kGvllyGppGtGktllakavaeetnatfirvvgs 190
                 k + l GppGtGkt +ak++ae     f r    
  MMETSP1061-20121228|2593_1 567 KIICLSGPPGTGKTSIAKSIAEALGREFYRFSVG 600
                 67899*****************999999886432 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.8e-05    0.0029     332     361 ..     560     589 ..     523     594 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.8e-05
   TIGR01448 332 lktaiqdkvviltGGPGtGKtTvtkaiiel 361
                 lk ++q k++ l+G PGtGKt + k i+e 
  MMETSP1061-20121228|2593_1 560 LKGSVQGKIICLSGPPGTGKTSIAKSIAEA 589
                 78899**********************985 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.6e-05    0.0093      21      49 ..     565     593 ..     547     598 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.6e-05
   TIGR00150  21 latvvlLkGdlGaGKttlvkgllkglGiq 49 
                  ++++ L+G  G+GKt++ k+++++lG +
  MMETSP1061-20121228|2593_1 565 QGKIICLSGPPGTGKTSIAKSIAEALGRE 593
                 589************************76 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.7   7.7e+02     143     160 ..      29      46 ..      25      49 .. 0.83
   2 !   11.7   0.0   0.00018     0.029      21      47 ..     566     592 ..     549     601 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 4.7
   TIGR02640 143 eeyvkvhPefrviltsnp 160
                 ++yv+++Pe+r  l  n+
  MMETSP1061-20121228|2593_1  29 SHYVRIEPEYRRSLYFNS 46 
                 68*********8887776 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00018
   TIGR02640  21 gypvhlrGPaGtGktslalhvakkrdr 47 
                 g  + l GP GtGkts+a  +a+ ++r
  MMETSP1061-20121228|2593_1 566 GKIICLSGPPGTGKTSIAKSIAEALGR 592
                 566889*****************9998 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       5.7   9.4e+02      55     118 ..     393     453 ..     370     461 .. 0.56
   2 !   12.0   0.0   0.00017     0.027       4      30 ..     568     594 ..     565     605 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 5.7
   TIGR00017  55 dallelikeldiefikekgevevllngedvseairtqevanlvskvaaeqkvReallkkqrkla 118
                 ++l  +++e d e+  +k  + +l + ++vs+  + qe++++v +  +e++ R  l +++++++
  MMETSP1061-20121228|2593_1 393 EDLQAVLEEKDAEMRLHK-ALVLLSKEREVSK--LQQEIQSKVEEKMSESQRRYFLTEQLKSIK 453
                 456666666666666666.3334445555555..456666666666666665665555555555 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00017
   TIGR00017   4 iiaiDGPsaaGKstvakalaeklgyky 30 
                 ii + GP ++GK+++ak++ae+lg ++
  MMETSP1061-20121228|2593_1 568 IICLSGPPGTGKTSIAKSIAEALGREF 594
                 8999******************98655 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.4         1   1.7e+02     268     337 ..     413     456 ..     368     506 .. 0.43
   2 ?   11.7   0.0   0.00014     0.024      39      60 ..     569     590 ..     540     593 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1
   TIGR02397 268 ellekgvdleklledliellrdlllvkktkselleveeeeeeslkekaeklslekllellkilleaekel 337
                  ll+k+ +++kl +++ + +++ +   +                            + l++ l++ +kel
  MMETSP1061-20121228|2593_1 413 VLLSKEREVSKLQQEIQSKVEEKMSESQRR--------------------------YFLTEQLKSIKKEL 456
                 222222222222222222222222222222..........................11222222222222 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00014
   TIGR02397  39 yLfsGprGvGKTsiArilAkal 60 
                   +sGp G+GKTsiA+ +A+al
  MMETSP1061-20121228|2593_1 569 ICLSGPPGTGKTSIAKSIAEAL 590
                 4689***************998 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   2.4      0.02       3.2      85     186 ..     393     493 ..     362     508 .. 0.68
   2 ?    8.6   0.0    0.0022      0.36     192     217 ..     562     584 ..     528     593 .. 0.72
   3 ?    1.2   0.1      0.39        64      85     181 ..     748     863 ..     725     878 .. 0.45

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.02
   TIGR03499  85 eekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselal..eeedperakllkklleagvseelarelleklke.kedaeeareklreaLekkls 186
                 e+ ++  eek ae   +++  l     + ++e+++l++ ++++++e ++  +++    ++l +  +e g++++  ++++ek ++  ++ +++ e++ + +e +l+
  MMETSP1061-20121228|2593_1 393 EDLQAVLEEKDAEMRLHKALVLL----SKEREVSKLQQEIQSKVEEKMSesQRRYFLTEQLKSIKKELGMERDDKEAVIEKYRKqLANYSDIPEEVNKTIEAELE 493
                 33344444444444444444444....445555555555555555543344778888888888889999999999999999999888999999999999998884 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0022
   TIGR03499 192 deilekggviaLvGptGvGKTTTlAK 217
                  +   +g++i L Gp+G GKT ++AK
  MMETSP1061-20121228|2593_1 562 GS--VQGKIICLSGPPGTGKT-SIAK 584
                 33..4899************7.5666 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.39
   TIGR03499  85 eekekeaeekaaeaaqeaekkleeae..................eelrkelkalkellekqlselal....eeedperakllkklleagvseelarelleklkekedaeeareklreaL 181
                 ee+e++ae+k+++++ ++e+k +e +                  e++   +   k+++e++++  a+    ++ ++ ++++++kl  + v e   +el +k    ++++e +  ++e L
  MMETSP1061-20121228|2593_1 748 EEEEENAESKESDSDDTEEPKVKETKvpsdsveittplgtfvvpENVPPTIGIAKDAIESLVRWYAReagvRNLSKYIDRITRKLALQVVAEGEGTELTKKS---TRKSESWTVTEENL 863
                 111111111111111111111111113333334456667777886677777777777777776655533333333333333333333333333333333333...33444444444444 PP

>> TIGR02880  cbbX_cfxQ: CbbX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00016     0.026       9      87 ..     526     595 ..     521     650 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00016
   TIGR02880   9 eesgikevldeldreliglkpvktrireiaalllverlrqklglasaapslhmsftgnpgtgkttvalrmakilhrlgy 87 
                 e+ +i++  + l+r+  gl  vk+ i e  a   v +l+       +  +  ++++g pgtgkt++a  +a+ l r  y
  MMETSP1061-20121228|2593_1 526 ENFDIQDARQVLNRDHYGLDDVKDTILEFIA---VGKLKG------SVQGKIICLSGPPGTGKTSIAKSIAEALGREFY 595
                 5667899999999999999999999988765...455443......34456799*****************99987655 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.4       1.2     2e+02     147     177 ..     447     480 ..     395     513 .. 0.58
   2 ?   10.1   0.1   0.00061       0.1       3      29 ..     570     598 ..     568     610 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.2
   TIGR01351 147 ecddctaellkqReDDteevvkk...RlevYkeq 177
                 e+ +  +++l   +DD+e v++k    l  Y++ 
  MMETSP1061-20121228|2593_1 447 EQLKSIKKELGMERDDKEAVIEKyrkQLANYSDI 480
                 2333444555567788888886421134445444 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00061
   TIGR01351   3 vllGpPGsGKGTqakrlaeklg..lvhis 29 
                  l GpPG+GK ++ak +ae lg  + + s
  MMETSP1061-20121228|2593_1 570 CLSGPPGTGKTSIAKSIAEALGreFYRFS 598
                 689****************9874445555 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   6.3    0.0032      0.53      32     149 ..     393     503 ..     379     512 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0032
   TIGR03319  32 eeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekisgltqeeA 149
                 e+ ++++ee+  e   +k  +ll++ +ev kl++e++++++e+ +e q++   l+++ ++++++         e + ke+ +e+ +k+l + ++  ee+ k+ ++eLek+s+l ++  
  MMETSP1061-20121228|2593_1 393 EDLQAVLEEKDAEMRLHKALVLLSKEREVSKLQQEIQSKVEEKMSESQRRY-FLTEQLKSIKKEL------GMERDDKEAVIEKYRKQLANYSDIPEEVNKTIEAELEKLSSLEMNSS 503
                 566788999999999999999999999999999999999999988866543.2333333444333......34556778888888999999999999999999999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1074 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       387  (0.0943442); expected 82.0 (0.02)
Passed bias filter:                      263  (0.0641151); expected 82.0 (0.02)
Passed Vit filter:                        82  (0.0199902); expected 4.1 (0.001)
Passed Fwd filter:                        25  (0.00609459); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              25  [number of targets reported over threshold]
# CPU time: 0.97u 0.18s 00:00:01.14 Elapsed: 00:00:00.74
# Mc/sec: 1915.63
//
Query:       MMETSP1061-20121228|2594_1  [L=814]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   11.9   2.4       0.59    6.6   0.4    2.8  3  TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL


Domain annotation for each model (and alignments):
>> TIGR03300  assembly_YfgL: outer membrane assembly lipoprotein YfgL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.023        95     315     340 ..     455     480 ..     451     499 .. 0.81
   2 ?    6.6   0.4   0.00014      0.59      83     135 ..     568     651 ..     545     653 .. 0.80
   3 ?    2.8   0.0     0.002       8.2      59      89 ..     663     693 ..     652     703 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.023
   TIGR03300 315 apallgkyvvvgDfeGylhlLdredG 340
                 +p+   + v + D++G++ +++ ++G
  MMETSP1061-20121228|2594_1 455 GPLSTADDVSLLDTDGFVQFMNLASG 480
                 67778888999999999999998888 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00014
   TIGR03300  83 esGkelWkvdlke...............................rlsgGvtadgglvlvgtekgevialdaedGkelWrakvss 135
                 e+G++ W+++l                                  +  G ++d+++   g+++  vi +++edG+ +W ++v s
  MMETSP1061-20121228|2594_1 568 ENGRHAWTTQLYAvndknklngakteafgchmiqsdpsllyvggTVYNGAVMDSNHRSAGGDDVWVIQMSTEDGSLKWIQQVGS 651
                 467777777766666677777777777777777777777777778999*********************************987 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.002
   TIGR03300  59 lkpavaddkvyaadadGevaaldaesGkelW 89 
                 ++ a+++d+++  +++Ge+++++a++G+ + 
  MMETSP1061-20121228|2594_1 663 IQAALNGDAIVYGETNGELYRVKAKEGESIS 693
                 6677888888888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 3357.47
//
Query:       MMETSP1061-20121228|2596_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 744.42
//
Query:       MMETSP1061-20121228|2595_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-21   74.5   0.0    2.2e-11   41.2   0.0    2.7  2  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    5.1e-15   53.0   0.0    3.6e-07   27.2   0.0    3.0  2  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    1.5e-13   48.3   0.0    3.7e-11   40.4   0.0    2.8  2  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    4.1e-12   43.7   0.0    6.4e-11   39.8   0.0    2.1  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    7.9e-12   42.7   0.0    1.7e-08   31.8   0.0    3.0  2  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    1.4e-10   38.4   0.0    1.8e-07   28.2   0.0    3.1  2  TIGR03537 DapC: succinyldiaminopimelate transaminase
      2e-08   31.3   0.0     0.0028   14.4   0.0    2.8  2  TIGR01141 hisC: histidinol-phosphate transaminase
    1.9e-05   21.5   0.0    0.00025   17.9   0.0    2.6  2  TIGR03947 viomycin_VioD: capreomycidine synthase


Domain annotation for each model (and alignments):
>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   9.5e-11   4.9e-08      68     134 ..      84     156 ..      53     178 .. 0.90
   2 !   41.2   0.0   4.2e-14   2.2e-11     172     400 ..     217     470 ..     203     473 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 9.5e-11
   TIGR01265  68 gYapsvGvlaareavaeyls......keleakleaddvvltsGcsqaielviealanaganiLvPrPgfplYe 134
                  Y p+ G ++ r av++yl+       +++++l++d +v+ +Gc+  +e +  +la++g+ +++P P ++ +e
  MMETSP1061-20121228|2595_1  84 YYQPTHGRESLRVAVTSYLEdlldldGDANGNLDPDGIVVGAGCNAVLENLCVSLAEPGEGVMIPLPYYAAFE 156
                 49*****************99999989999***************************************9987 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 4.2e-14
   TIGR01265 172 alvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgd..atfvplaklaskvP..............vlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAlpdilektpkeffekkikvlkenaelvyeelkei.pglt...cvkPegamyllvklelell.eei....kdDvdFceklvkEesvillPgsal..elenylRitltvek.svleealeRikeFce 400
                 +l++  P+nP G  +  + +++ ++ +++ k+ +++DE+Y+  v++   a f +  klas  P              v  + ++sk +   G r+G +  ++p+  l     q l++l+  + +   lv + + ++  + pk   + + + lken   + e+ ++   +l+    ++ +++  l+  ++++++ ++     + +     +l++E+ + + Pg+ +  el++++R ++t  + + +e ++eR+++++e
  MMETSP1061-20121228|2595_1 217 ILLISHPQNPLGICYPPHVVREAIDWCRENKIHLVSDEIYAGSVYEPetAGFSSALKLASSSPssspgekglglgpyVHFVYALSKDYALSGLRVGIMYSENPEIRLPL---QKLNDLCCISSQTQCLVEDMMTELWPRWPKTSVHWTQEFLKENQRRIRERKNAWqSCLDelgIPHLDATAGLFCWMDFSEFlPDTgtpsERERALYLELLQEHGLLFTPGDSMknELPGFFRCVFTAASdHEFELGMERLRKYVE 470
                 689******************************************97456799999999998833333332222222234569*************9988888877765...99**********************99999988888888888888776666544314444111444345555555555554325541221556778999*************9844689****99987651678889*****9987 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.6e-08   2.9e-05      69     135 ..      85     156 ..      43     175 .. 0.85
   2 !   27.2   0.0     7e-10   3.6e-07     172     399 ..     216     469 ..     200     473 .. 0.66

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 5.6e-08
   TIGR01264  69 yaptvGaleareaiaeyyan.....kradgeleaddvvlasGcshalelaiealadaGenvlvPrPGfplye 135
                 y pt G ++ r a+++y ++       a+g+l+ d +v+ +Gc   le    +la++Ge v++P P ++ +e
  MMETSP1061-20121228|2595_1  85 YQPTHGRESLRVAVTSYLEDlldldGDANGNLDPDGIVVGAGCNAVLENLCVSLAEPGEGVMIPLPYYAAFE 156
                 99****************99988888999*******************9999**************998776 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 7e-10
   TIGR01264 172 kalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkg..atflalaslssevPilslg..............GlakrllvPGWrlGWliihdrkgvlrdvkdGlkklsqrilGpntlvqGalkeilrktPqeyfdgvvsvlesnadlvyealaev......vGlkpvkPkGamyllvkielekf.ke....lksdvefveklveeesvfvlPgsif..elPgylrvvltvpkav.leeavsrikefc 399
                 ++l+++ P nP G  +  + ++e +  ++++k+ +++deiy++ v++   a f +  +l s+ P  s g               l+k + + G r+G +   +++  +r  ++ l  l+     +  lv   ++e+  + P+   + + + l++n   + e  ++        G+        ++  ++    +f ++     + +  +  +l++e+ +   Pg  +  elPg++r v t ++   +e  ++r++++ 
  MMETSP1061-20121228|2595_1 216 RILLISHPQNPLGICYPPHVVREAIDWCRENKIHLVSDEIYAGSVYEPetAGFSSALKLASSSPSSSPGekglglgpyvhfvyALSKDYALSGLRVGIMYSENPE--IRLPLQKLNDLCCISSQTQCLVEDMMTELWPRWPKTSVHWTQEFLKENQRRIRERKNAWqscldeLGIPHLDATAGLFCWMDF--SEFlPDtgtpSERERALYLELLQEHGLLFTPGDSMknELPGFFRCVFTAASDHeFELGMERLRKYV 469
                 5799******************************************87667788877777777755433221211122222225789999999999955444443..44456677888877777888999999998888887777777777777766554433322000111355555555555544444..333233111145566677889999999999998763368999999999877541555677777775 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0056       2.9      62     129 ..      84     156 ..      23     171 .. 0.81
   2 !   40.4   0.0   7.2e-14   3.7e-11     166     382 ..     216     467 ..     204     468 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0056
   TIGR03540  62 ryPsyeGllayrkavadwykkrfgve......ldpetevlsliGskeGiahlplafvnpGdivlvpdPgyPvyk 129
                  y  ++G  ++r av++++++  +++      ldp+  v    G    +  l +++ +pG+ v++p P y +++
  MMETSP1061-20121228|2595_1  84 YYQPTHGRESLRVAVTSYLEDLLDLDgdangnLDPDGIV-VGAGCNAVLENLCVSLAEPGEGVMIPLPYYAAFE 156
                 577788999999999999999988862222225555544.457999999*********************9987 PP

  == domain 2    score: 40.4 bits;  conditional E-value: 7.2e-14
   TIGR03540 166 kilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfdeyka..lsflev........dgakdvaie.....lhslsktynmtGWrig.favGnkeliaalgkvks..nvdsGvfqa.iqeaai........aaleeeeevvkelrkvykkrrdllvealkkiGldvkkpkatfylWvk....vPe.Gyts...aefakklleeagvvvtpGvgfGesGeGyirisltvsee.rlkeaverlkk 382
                 +il + +P+nP + + + + ++e++++++e++i +v+d+ y+  v++ ++a   s l++        +g k +++      +++lsk y++ G r+g + + n e+   l+k+ +   + s + q  + ++          ++++ ++e++ke+++  ++r+++  + l ++G+    + a ++ W+      P+ G+ s     +  +ll+e g++ tpG +  ++  G++r   t  ++ +++ ++erl+k
  MMETSP1061-20121228|2595_1 216 RILLISHPQNPLGICYPPHVVREAIDWCRENKIHLVSDEIYAGSVYEPETAgfSSALKLassspsssPGEKGLGLGpyvhfVYALSKDYALSGLRVGiMYSENPEIRLPLQKLNDlcCI-SSQTQClVEDMMTelwprwpkTSVHWTQEFLKENQRRIRERKNAWQSCLDELGIPHLDATAGLFCWMDfsefLPDtGTPSereRALYLELLQEHGLLFTPGDSMKNELPGFFRCVFTAASDhEFELGMERLRK 467
                 899******************************************998765334566542222222256677775333333579*************4456788998889988762233.4444441444332112222225788899***************************************83333465344442113466789************************9997655167778888875 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.2e-13   6.4e-11      63     284 ..     116     405 ..     111     448 .. 0.84

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 1.2e-13
   TIGR01140  63 ldaesvlavnGaqeaiql.lprllapkrv.lvlaptyseyaral.raagaevvels................................dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpaeslaalaea...................lpglvVlrSltKffglaGlRlGfvvAe.pallerlkealgpWsvngpAqavgeaala.............deawqkatrarlaaererlaallaalgllevvggtalFllvrted 284
                 ld++ +++++G +++++    +l++p++  +++ p y+ ++  l ++ag+evv ++                                + ++++++    ++l++ +P NP G +++++ ++++++ ++++++ lv DE ++  + + + a+  +a                    p +  + +l K ++l GlR+G + +e p++   l+++ +   ++  +q + e +++              +++ k++++r+++++++ ++ l++lg+ ++ +++ lF+++++++
  MMETSP1061-20121228|2595_1 116 LDPDGIVVGAGCNAVLENlCVSLAEPGEGvMIPLPYYAAFEFDLgSRAGLEVVPVAtmehagydhgsgggespppeayylsrgaldaaKQKSIDEHGIVPRILLISHPQNPLGICYPPHVVREAIDWCRENKIHLVSDEIYAGSVYEPETAGFSSAlklassspssspgekglglGPYVHFVYALSKDYALSGLRVGIMYSEnPEIRLPLQKLNDLCCISSQTQCLVEDMMTelwprwpktsvhwTQEFLKENQRRIRERKNAWQSCLDELGIPHLDATAGLFCWMDFSE 405
                 68999***********9934566677665599********9877479***********************************965443333333333567899*************************************99876554433332222223345556667677777788999********************86788889**********************99*******999999999999*********************88888999999998765 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0015      0.75       1     120 [.      27     157 ..      27     180 .. 0.65
   2 !   31.8   0.0   3.2e-11   1.7e-08     142     356 ..     214     465 ..     195     466 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0015
   TIGR03539   1 lPdfPWdklaeakakaashpdGivdlsvGtPvdpvpalirealae........aadapgyPqtaGteelreaivdalerrlgvkgldeeavlP.....viGtkelvallPtllGlgagdtvviPevayPtyev 120
                 lP++  d+ a  k   ++ pdG ++lsv        +++  al++         ad   y  t+G e lr a++++le  l+  g  + +  P       G   ++  l   l  ++g+ v+iP   y ++e 
  MMETSP1061-20121228|2595_1  27 LPTYLTDARAVQKYCRETAPDGALQLSVAEN-QMLEDMLVPALTKfsrsrdvfPADGIYYQPTHGRESLRVAVTSYLEDLLDLDGDANGNLDPdgivvGAGCNAVLENLCVSLA-EPGEGVMIPLPYYAAFEF 157
                 7888888888888888899999999999865.233333333443311111111466777999****************999887755554444333004556666667776664.788999998888887764 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 3.2e-11
   TIGR03539 142 kvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWege........avsvldpevcggdle.g....llavhslskrsnlagyragfvaG.dealvaellevrkhaGlmvp.aPvqaamvaal..........addehvaeqkeryaarrellkaalekaGfriehseaglylWa..........trge.daretvdrlaelGilvaPGdfygeagkefvrvaltat.deriaaaverl 356
                  ++++ +  P nP G     + +r+++++ re+ + ++sde y++ ++e e         ++   p+ + g++  g    +  v++lsk   l+g r g +   ++++   l +    + +    + +++ m++ l            +e  +e ++r ++r+++ ++ l + G     + agl+ W           t +e +    ++ l e+G+l +PGd   ++   f r  +ta+ d++ +  +erl
  MMETSP1061-20121228|2595_1 214 VPRILLISHPQNPLGICYPPHVVREAIDWCRENKIHLVSDEIYAGSVYEPEtagfssalKLASSSPSSSPGEKGlGlgpyVHFVYALSKDYALSGLRVGIMYSeNPEIRLPLQKLNDLCCISSQtQCLVEDMMTELwprwpktsvhWTQEFLKENQRRIRERKNAWQSCLDELGIPHLDATAGLFCWMdfseflpdtgTPSErERALYLELLQEHGLLFTPGDSMKNELPGFFRCVFTAAsDHEFELGMERL 465
                 578999********************************************9999766552222234444333321311225679***************986615677666655555554433212333444333312111111003445567788899****************9999********7222222221122221333458999*************************975277777777776 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0032       1.6      32     118 ..      85     174 ..      71     179 .. 0.71
   2 !   28.2   0.0   3.6e-10   1.8e-07     138     332 ..     216     449 ..     199     459 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0032
   TIGR03537  32 ypsvlGekalreaiagylerrfgv......kldpdaevlpsaGskeaifhlplafldpeeerkkviygtpgypvyerG.alfaggealkvklkk 118
                 y  + G+++lr a++ yle   ++      +ldpd  ++  aG+   +  l +++++   +   v+++ p y+ +e      ag+e ++v   +
  MMETSP1061-20121228|2595_1  85 YQPTHGRESLRVAVTSYLEDLLDLdgdangNLDPDG-IVVGAGCNAVLENLCVSLAE---PGEGVMIPLPYYAAFEFDlGSRAGLEVVPVATME 174
                 66789*************998766111111566765.55677887666666666655...6679*********999642345888888887655 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 3.6e-10
   TIGR03537 138 kivwinyphnptGaeapasylkevaelareygiilasdecya.eiysee..kpasvlevglen...............vlafhslskrsGmtGyrsgflaGde.elvsalrklrasvGvaspe..fvqaaataaws.........ddahvaerrkifkrkrdlfleflakkGlealasdatfylwvk.........vpegidaksyalrlleeGivvapGeafgageeeyvrva 332
                 +i+ i++p np G   p   ++e+++ +re  i l+sde ya  +y+ e    +s+l+++                  v  +++lsk   ++G r g++  ++ e+   l+kl     ++s +  +v+   t  w           ++  +e ++  +++++ + + l + G+  l + a ++ w+          +p+  +   y   l e+G++ +pG ++ +   +++r  
  MMETSP1061-20121228|2595_1 216 RILLISHPQNPLGICYPPHVVREAIDWCRENKIHLVSDEIYAgSVYEPEtaGFSSALKLASSSpssspgekglglgpyVHFVYALSKDYALSGLRVGIMYSENpEIRLPLQKLNDLCCISSQTqcLVEDMMTELWPrwpktsvhwTQEFLKENQRRIRERKNAWQSCLDELGIPHLDATAGLFCWMDfseflpdtgTPSERERALYLELLQEHGLLFTPGDSMKNELPGFFRCV 449
                 7999*************************************846999885434567766542111111122222222256789**************99876515666799999999998876346777777766422111111134556677777889999999********************9733332222235555666688888899999999999988888888765 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.4e-06    0.0028      69     112 ..     113     158 ..      85     180 .. 0.78
   2 !   13.2   0.0   1.2e-05    0.0064     144     235 ..     215     328 ..     196     349 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.4e-06
   TIGR01141  69 g..veeenillgnGsdelielliraflepgdavlvleptysmYevs 112
                 +  ++++ i++g+G + ++e l+ +++epg+ v+++ p y+ +e  
  MMETSP1061-20121228|2595_1 113 NgnLDPDGIVVGAGCNAVLENLCVSLAEPGEGVMIPLPYYAAFEFD 158
                 15599************************************99874 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1.2e-05
   TIGR01141 144 vklvflasPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee...................asvlellaeypnlvvlrTlSKafgLAglRvGyaian.aeiiealekv 235
                 +++  + +P+nP G +   + +++ ++   e +   V De Y     e                       + l   p +  +  lSK ++L glRvG+++++ +ei   l+k+
  MMETSP1061-20121228|2595_1 215 PRILLISHPQNPLGICYPPHVVREAIDWCrEnKIHLVSDEIYAGSVYEpetagfssalklassspssSPGEKGLGLGPYVHFVYALSKDYALSGLRVGIMYSEnPEIRLPLQKL 328
                 5677788899999999999998888888876567778899887644444477777778887777443112223444567778889**************998515555556665 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.44   2.2e+02      72     117 ..     121     167 ..      90     179 .. 0.72
   2 !   17.9   0.0   4.9e-07   0.00025     143     356 ..     215     466 ..     208     469 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.44
   TIGR03947  72 vlvthGsseaiylvltallrPGdevvvvdpayhsls.elavalgakv 117
                 ++v  G    +      l +PG+ v++  p y  ++ +l   +g +v
  MMETSP1061-20121228|2595_1 121 IVVGAGCNAVLENLCVSLAEPGEGVMIPLPYYAAFEfDLGSRAGLEV 167
                 55566665555555567889999999999999876434555555544 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 4.9e-07
   TIGR03947 143 trlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvydaep........lpe..p.saaadrvisfg.......tlskafGlpGlrvGWcvaPk.dllaelvrlrdyltls..lsPlvell.aevavehadalieprlaearanrrrlldWaaahedvvr.ltvPe....GGvaafprf........agladvtdlCerllarhgvlvvPGscfGaadr..vrlGfgg.ssaeleaGlerls 356
                 +r++++  P+nP G++  +++ +e ++   e + +l+ d+ +a  vy+ e+        l+   p s+  +++++ g       +lsk + l+GlrvG     + ++   l +l d   +s  +  lve +  e   +   + +   ++  ++n+rr+++   a +  ++ l +P+     G+  +  f        +  +   +l  +ll++hg l  PG  + +      r  f++ s +e+e G+erl 
  MMETSP1061-20121228|2595_1 215 PRILLISHPQNPLGICYPPHVVREAIDWCRENKIHLVSDEIYAGSVYEPETagfssalkLASssPsSSPGEKGLGLGpyvhfvyALSKDYALSGLRVGIMYSENpEIRLPLQKLNDLCCISsqTQCLVEDMmTELWPRWPKTSVHWTQEFLKENQRRIRERKNAWQSCLDeLGIPHldatAGLFCWMDFseflpdtgTPSERERALYLELLQEHGLLFTPGDSMKNELPgfFRCVFTAaSDHEFELGMERLR 466
                 588999*****************************************976422222211322112123457888877444444479************8775432677778889998766522567887551444556677777777777777777777655555444432444441111344444444555877654455567889999999999999999886643334888887514567888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.45
# Mc/sec: 1390.29
//
Query:       MMETSP1061-20121228|2600_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 2210.82
//
Query:       MMETSP1061-20121228|2597_1  [L=968]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (968 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       616  (0.150171); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.89u 0.20s 00:00:01.09 Elapsed: 00:00:01.35
# Mc/sec: 946.41
//
Query:       MMETSP1061-20121228|2599_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 2066.45
//
Query:       MMETSP1061-20121228|2601_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1826.44
//
Query:       MMETSP1061-20121228|2598_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-56  190.9   2.6      1e-56  190.9   1.8    2.8  3  TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family


Domain annotation for each model (and alignments):
>> TIGR00094  tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.018        76       5      45 ..      55     109 ..      52     115 .. 0.77
   2 ?   -1.3   0.3     0.057   2.3e+02     301     377 ..     168     243 ..     130     255 .. 0.57
   3 !  190.9   1.8   2.5e-60     1e-56      20     412 ..     256     715 ..     242     716 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.018
   TIGR00094   5 leeepllelksvdtttgkikasnrdfiveeie..............gvelsgege 45 
                 l +  +l  +s  + t+ +ka   df v+ei               +ve s++ e
  MMETSP1061-20121228|2598_1  55 LGISEYLSTTSFSGFTAVVKARYSDFLVHEIDldgnvaqltslevpKVESSNTVE 109
                 666778888888999***************9977777777777766666666554 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.057
   TIGR00094 301 sgidDededeverealrfeakavaqedalevkltmkdelleregldvly.eelkklevdklksdeakalnsrrkvwdf 377
                   ++++d +  e+e ++   +  ++++ ++   +  ++ +  ++l+++    +++  +++lk   a++l  ++++w+ 
  MMETSP1061-20121228|2598_1 168 ASVSNSDSERNEKEKSE--DTTKTEQSDDKKATDSLEKFVTLPNLEKEKrKGVHEWVRNSLKCARADTLDGKIRIWHA 243
                 33333333322222222..22222222222223445556666677776666677777777877777787777777765 PP

  == domain 3    score: 190.9 bits;  conditional E-value: 2.5e-60
   TIGR00094  20 tgkikasnrdfiveeiegve.lsgegefivitveKenkdTlevvrvlakllgvssreigfAGtKDkrAvTtQrvsilkvkle....eldll......nvklkg...vkilevnkserklrlGdLkGNrFtivirdvetlnseesleeilselck........kgfpNYFGlQRFGtirisTHtvGrellesnvkgaaelylskplenetkkskearrifa...........es.daksalknlpkalrlerallkslleqrensylkaimslpknlktmfvhayQsylfNriaseriellglk.pvvgdl......eksklisgidDededeverealrfeakavaqedalevkltmkdelleregldvly...eelkklevdklksdeakalnsrrkvwdfseegssr....................................ktavvlkFyLpkgsYAtsvlrElikket 412
                 + + k++  d   ++++ ++ +s+  +f+ + + Ken+dT  + +++ ++   s  ++g AG+KDkr +T Q+ + ++   e    +++        n k kg   ++i+++++ +r lrlG+LkGNrF+i++r+v+ l++ e  e  ++e+ +        kgf+NY+G QRFG    +TH+vG ++l+++ k+a+e  +  p  ++ +   +ar+ ++           es  ak  lk+l + + +e a ++sl ++    y ka+  +pkn k+mf+ha Qs ++N++as+r + +  +  +vgdl      e     +++ ++d +  +   + ++   v +++ ++   +  + +l+   ld l+   e +++l+   + +      + +r +    ++ +++                                      a+v+ F Lp +sYAt +lrEl+k+ t
  MMETSP1061-20121228|2598_1 256 GTHKKRKMSDRAMKKKARIDwPSDRPDFLQFVLYKENCDTTSATKEVMRR--GSTVRVGVAGMKDKRGITSQFCTLYRTLPEhvmkHQNQQrgggggNTKQKGnsiIQIGNFQFVRRELRLGSLKGNRFDIILRNVKLLEDSENNESKRKEVLEkaaeavkeKGFINYYGTQRFG-KFTNTHLVGIAVLKGDFKKAVEILME-PNSEDRPDITQARKDWQnrftygetkenESsTAKRVLKRLNRFMSAEIAVMQSLAKD-PLDYKKAFSRIPKNMKMMFIHAVQSLIWNQAASHRLAKMSREdVMVGDLvpnsdkESKSRVHIVTESDVESKKYTMEDVLVPVVGSKTVFPT--NELGSVLKTLLLD-LGltiEMFRALKDREISA-----NGDYRNAIVHPNDFDYSvkeyyhplqpllqtdlmklngeeitiepkekeddptLVAMVVGFTLPSSSYATIALRELMKTPT 715
                 55667777788888888887467889********************9885..67789*****************87775544432211111111111233444555899***************************98876665444444443334448888*************.6689****************997665.5557777777777777422223333322344688999*******************9.888999*****************************99998762579**99988743333445555555555555666677777777777774..3356667766555.332345555555555544.....44444444444444444555689*****************************9889**********************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 2281.53
//
Query:       MMETSP1061-20121228|2602_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       300  (0.0731351); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1615.97
//
Query:       MMETSP1061-20121228|2604_1  [L=1292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       466  (0.113603); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.24u 0.18s 00:00:01.42 Elapsed: 00:00:00.85
# Mc/sec: 2006.23
//
Query:       MMETSP1061-20121228|2605_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1383.61
//
Query:       MMETSP1061-20121228|2606_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-12   41.8   0.0    1.1e-11   41.3   0.0    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    8.2e-09   32.1   0.0    1.1e-08   31.7   0.0    1.2  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    5.5e-08   29.4   0.0    8.9e-08   28.7   0.0    1.3  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    6.9e-07   26.9   0.0    1.5e-06   25.8   0.0    1.5  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    0.00061   16.5   0.0     0.0012   15.5   0.0    1.4  1  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase


Domain annotation for each model (and alignments):
>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   1.4e-14   1.1e-11      12     226 ..      29     244 ..      16     269 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 1.4e-14
   TIGR02441  12 rthlsvevkgdvavvkidspnskvntlskelsaefkevldeletne....avksavlisskpgsfvaGadidmlkacktaeevtqlsreaqkll.eklekskkpivaaisGsclGGGlelalachyriatkdkktl....lglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvdplGpGlkpaeertieyleevavkvakela 226
                 +t    e +g va+v+++      n+ls el ae++e+++ +++++    +  ++vl ss pg f aG di+       a+   ++  + q+l+ +    s+   vaa+ G     G  lal+c+yri  +   t+    +gl e  lG++     ++++  + + +      l G     + a   Glvd+l+  l +  +p     +  lee+a+  a+e+a
  MMETSP1061-20121228|2606_1  29 TTEYPPEDNGRVALVRMNRKP--ANALSLELCAELSETIQTIRSQNhhrkQTTAVVLASSLPGIFSAGLDIGQELYQPDADRLPKFWWQVQQLFlDLYGCSQLTTVAALGGHAPAAGCMLALSCDYRIILDSPSTKtppsIGLNESHLGIVAPPWMARQFIDVLGHRRGELALLQGTMFPPNAALERGLVDQLLT-LDDNKEP-----FAMLEETALAKAREFA 244
                 34444677899*****99754..699****************9986222256678999*************98777888888888877777766155578999*************************9886555322338999999999866666666666666655555568888888888999999999874.5554444.....4567777777777766 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.3e-11   1.1e-08      25     185 ..      56     221 ..      35     274 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.3e-11
   TIGR02440  25 tlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadismlaacktadeakalaqkgqellaeleal.pikvvaaihgaclggglelalachsrvcsdddkt....vlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvp 185
                  l ae+++ +++i +q +++k+   +vl s+ p  f ag di        ad   ++  + q+l+ +l    ++  vaa+ g     g  lal+c  r+  d + t     +gl e  lg++     ++++  ++g  +    +l g  + ++ al+ glvd+ + 
  MMETSP1061-20121228|2606_1  56 ELCAELSETIQTIRSQNHHRKQTTAVVLASSLPGIFSAGLDIGQELYQPDADRLPKFWWQVQQLFLDLYGCsQLTTVAALGGHAPAAGCMLALSCDYRIILDSPSTktppSIGLNESHLGIVAPPWMARQFIDVLGHRRGELALLQGTMFPPNAALERGLVDQLLT 221
                 467999999*********************************988777888999999999****99997652799************************9998766224459**********999999999999***9999999*****************98764 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.1e-10   8.9e-08      20     192 ..      42     224 ..      34     251 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 1.1e-10
   TIGR02437  20 lvfdapgsvnkldratlasldkaldalkaqs....dlkgllltsd.kdafivGaditeflelfakpeeellqwleeansvfnkledl.pvptvaavkGfalGGGlevvlatdfriadkt..a....kiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkaek 192
                 lv   +   n l  +  a+l+++++++++q     +  +++l+s+   +f  G di +  el++ + ++l ++  + +++f +l    ++ tvaa+ G+a   G+ + l++d+ri  ++  +    +iGl e +lGi+     + ++  ++G       + +G     + al  glvd +++ + 
  MMETSP1061-20121228|2606_1  42 LVRMNRKPANALSLELCAELSETIQTIRSQNhhrkQTTAVVLASSlPGIFSAGLDIGQ--ELYQPDADRLPKFWWQVQQLFLDLYGCsQLTTVAALGGHAPAAGCMLALSCDYRIILDSpsTktppSIGLNESHLGIVAPPWMARQFIDVLGHRRGELALLQGTMFPPNAALERGLVDQLLTLDD 224
                 4555566789999999***********987622224557887766267999*****97..7788888999999999999999997652799***********************9754311222237**********977777777888888888777788888888888888888888777665 PP

>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.8e-09   1.5e-06       7     228 ..      38     274 ..      35     304 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.8e-09
   TIGR02280   7 kgvlrltlnrpdklnsfteemhaelaealerverdd.vr....allltGaGrG.fcaGqdlser..nvtkgaapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaes..akf....iqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvv..dde.....aladevqalaahlakqptrglalikralqaaetnsldtqldlerdl 228
                 ++v+ + +nr    n+++ e+ ael e+++ +++++  r    a++l+ +  G f+aG d+++   +++++  p +  +v++ +  l       ++  v+a+ G a  aG  lal++d  +  +s  +k         ++lG++     +  +  ++G+ r     l g  +  + a e Gl+ q +  dd+     +l++++ a a+++a+ p ++ a++k   ++   ++l +  d erd+
  MMETSP1061-20121228|2606_1  38 GRVALVRMNRK-PANALSLELCAELSETIQTIRSQNhHRkqttAVVLASSLPGiFSAGLDIGQElyQPDADRLPKFWWQVQQLFLDLY---GCSQLTTVAALGGHAPAAGCMLALSCDYRIILDSpsTKTppsiGLNESHLGIVAPPWMARQFIDVLGHRRGELALLQGTMFPPNAALERGLVDQLLtlDDNkepfaMLEETALAKAREFARIPPQARAAVKDLTRSPLVEQLVE--DRERDI 274
                 56777788885.4699**************9998764333333899998887769******986236677799999999999997775...4567789********************66655550044311102334667777666555566667788776644455778889999******99652266544433577888888999*************9999988888876..556665 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-06    0.0012      43     152 ..      51     161 ..      41     180 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.4e-06
   TIGR03222  43 nsydlGvdieladalqrlrfe.h..pevrvvvltsakdkvfcaGanikmlglsthahkvnfckftnetrngiedaseesglkflaavnGtaaGGGyelalacdeivlvddrss 152
                 n+  l +  el +++q +r + h   +  +vvl+s+ + +f aG +i        a +  + kf  + ++ + d    s+l+ +aa+ G a   G  lal+cd+ ++ d  s+
  MMETSP1061-20121228|2606_1  51 NALSLELCAELSETIQTIRSQnHhrKQTTAVVLASSLPGIFSAGLDIGQELYQPDADR--LPKFWWQVQQLFLDLYGCSQLTTVAALGGHAPAAGCMLALSCDYRIILDSPST 161
                 5666777889********9752312356689***************976555555554..68******************************************999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2070.86
//
Query:       MMETSP1061-20121228|2609_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-168  559.3   2.1   1.9e-168  558.6   1.5    1.3  1  TIGR01425 SRP54_euk: signal recognition particle protein SRP54
   5.4e-101  336.3   3.3     3e-100  333.9   2.3    1.9  1  TIGR00959 ffh: signal recognition particle protein
    3.8e-68  227.6   1.8    6.1e-68  226.9   1.2    1.3  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
    1.9e-18   65.3   1.8    1.9e-18   65.3   1.3    2.7  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    0.00033   18.3   0.7     0.0008   17.1   0.0    2.0  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0042   14.0   0.0     0.0042   14.0   0.0    2.8  3  TIGR00750 lao: LAO/AO transport system ATPase
     0.0066   13.0   0.1      0.013   12.0   0.0    1.5  1  TIGR03708 poly_P_AMP_trns: polyphosphate:AMP phosphotransferase
  ------ inclusion threshold ------
      0.012   10.2   0.0      0.017    9.7   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
       0.02   12.3   0.2       0.35    8.2   0.0    2.2  2  TIGR01007 eps_fam: capsular exopolysaccharide family
      0.057   10.5   3.6      0.069   10.2   0.0    2.6  3  TIGR01420 pilT_fam: twitching motility protein
          5    3.3  11.6       0.13    8.5   0.3    2.3  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR01425  SRP54_euk: signal recognition particle protein SRP54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  558.6   1.5  5.1e-171  1.9e-168       1     427 [.       2     447 ..       2     448 .. 0.94

  Alignments for each domain:
  == domain 1    score: 558.6 bits;  conditional E-value: 5.1e-171
   TIGR01425   1 vladlGsklssalrslss.atvideevlnellkeistallesdvnvklvrklrenikk................kinleelasglnkrkliqkavfeelvnlvdpkveafkpkkgkssvimfvGlqGaGktttitklalyykkkGfkvalvcadtfraGafdqlkqnatkakipfyGsylesdpvkiaseGvekfkkekfdiiivdtsGrhkqeeelfeemlqvaeaikpdsiifvmdgsiGqaaesqakafkdsvevgsviitkldGhakGGGalsavaatkspiifiGtGekvddleifdaksfvskllGlGdlkGlidkvkdlklddeekelieklkeGkftlrdlkeqlqnllkmGplgnilsmipGlssellskgneeessaklkkllvildsmtdkeldstdkvllkee....srivrvarGsGraireveelleqykklak 427
                 vla+lG+kl+++lr+l++ +  +   +l+++l e+++al+esdvnv+lv  lr+n+k+                 ++ +++  + n  k++qkav +elv+l++p  +++ +k+gk++vi+fvGlqGaGkttti+k+a yy+++G+k+a+vcadtfraGafdqlkqnatk ++pfyGsy+++dpv ia eGv++f ke++++iivdtsGrh+qe+ l+eem++++ a+ pd++++vmd++ Gqa+++qa af ++v+vgsv+itkldGhakGGGalsavaat spi+f+G+Ge+ ddle+f+a+sfvskllG+Gd++Gl++ ++      +++el+ek+ +G+ftlrd+++q+q ++ mGpl ++++m+pG+   l++k ++ +s+++lkk+l+++dsmtdkeld++     ++e    sri+r+a GsG++ +ev++ll+ +++++ 
  MMETSP1061-20121228|2609_1   2 VLAELGGKLRESLRKLHTrSGHVTATQLKQVLSEVARALIESDVNVRLVMTLRDNVKQkverlieddedsenedDSDAKKEQRASNVSKMVQKAVVDELVQLLEPSRKPYVMKRGKPNVILFVGLQGAGKTTTIAKYANYYQRRGWKTAMVCADTFRAGAFDQLKQNATKLRVPFYGSYTQADPVAIAEEGVDQFVKEHYEVIIVDTSGRHRQEAGLLEEMQEISAAVAPDNVVLVMDATQGQAVYDQASAFSNAVDVGSVVITKLDGHAKGGGALSAVAATESPIVFLGSGEHFDDLEPFNAQSFVSKLLGFGDVRGLMEAMNGGPD--DKEELMEKMSKGEFTLRDMYKQFQRVMNMGPLNKVMGMVPGMPDYLIPKDGDSDSNTRLKKFLYMMDSMTDKELDGKVDFSDHDEpqtmSRIRRIAAGSGTHPKEVQMLLQVHRQFEG 447
                 8**************97526789999*******************************9888888888776665556667778888999*****************************************************************************************************************************************************************************************************************************************9997544..4447***********************************************************************987555443333449************************9976 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  333.9   2.3  8.1e-103    3e-100       3     427 ..       5     450 ..       3     451 .. 0.89

  Alignments for each domain:
  == domain 1    score: 333.9 bits;  conditional E-value: 8.1e-103
   TIGR00959   3 sLseklkkileklskk.kkitekdikealkeirlaLleaDVnlkvvkefikkvkekal.............g...qevlkslspkqqlikivkeeLvallgeesaelklaekkpavillvGLqGsGKtttaaKlakklkkkekkkvllvalDlyRpaAveqLkvlgeqvgvpvfekekekspveiakealeeakeekvdvvivDtaGRlqideelmeelkeikevlnPdeillVvdaltGqdavnvakeFderlgltgvvltklDgDargGaaLsvksvtgkPikfigvgEkledleeFhperiaeRilgmGDvlsLvekaeevvdeeeakklaeklakeefdleDlleqlrqikklGslskllkmlPglgkvkksekdldedekklkrieaiissmtkeErknpkiln.......asRkkRiakGsGtsvsdvnklikefeqakklmk 427
                 +L+ kl+++l+kl+++ +++t +++k++l e+ +aL+e+DVn++ v ++ ++vk+k+              +   ++  ++ + ++++ k v +eLv+ll  ++++  +++ kp vil+vGLqG+GKttt+aK a++  ++++ k+ +v +D+ R++A +qLk+ ++++ vp++ + ++++pv ia+e+++++ +e+++v+ivDt GR + +  l+ee++ei +++ Pd+++lV+da +Gq +   a +F++ +++ +vv+tklDg a+gG aLs  + t+ Pi f+g+gE+++dle+F++++ ++++lg GDv  L+e ++     ++ ++l+ek+ k+ef+l D+++q++++ ++G+l+k++ m+Pg+ +    ++   +++++lk++  +++smt +E +             +sR +Ria+GsGt+ ++v  l++ ++q + +++
  MMETSP1061-20121228|2609_1   5 ELGGKLRESLRKLHTRsGHVTATQLKQVLSEVARALIESDVNVRLVMTLRDNVKQKVErlieddedsenedDsdaKKEQRASNVSKMVQKAVVDELVQLLEPSRKPYVMKRGKPNVILFVGLQGAGKTTTIAKYANY-YQRRGWKTAMVCADTFRAGAFDQLKQNATKLRVPFYGSYTQADPVAIAEEGVDQFVKEHYEVIIVDTSGRHRQEAGLLEEMQEISAAVAPDNVVLVMDATQGQAVYDQASAFSNAVDVGSVVITKLDGHAKGGGALSAVAATESPIVFLGSGEHFDDLEPFNAQSFVSKLLGFGDVRGLMEAMNGG--PDDKEELMEKMSKGEFTLRDMYKQFQRVMNMGPLNKVMGMVPGMPDYLIPKDGDSDSNTRLKKFLYMMDSMTDKELDGKVDFSdhdepqtMSRIRRIAAGSGTHPKEVQMLLQVHRQFEGMVS 450
                 6888999999999765279*****************************999999997522222222111111111122333455678889**********************************************9.778999*******************************************************************************************************************************************************************************99965..556779**************************************988777776666899****************6533222112233369*************************9998875 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  226.9   1.2   1.6e-70   6.1e-68       4     279 .]      30     312 ..      27     312 .. 0.89

  Alignments for each domain:
  == domain 1    score: 226.9 bits;  conditional E-value: 1.6e-70
   TIGR00064   4 eevleeLeevLleaDvglevvekiieelkkelke....kkvkeeeklkellkeelkealkeileketklel.........kelkeekkpnvillvGvNGvGKTttiaKlakllkkegkkvllaAgDTFrAaAieQleewakrlgvkvikqkegadpaavifdaikkakaknidvvliDTaGRlqnkknLmdelkkikrvikkvkkeapdevllvldattGqnaleqakvFneaveldgiilTKlDgtakgGivlaikeelklpvkligvGekidDLaeFdaeefveall 279
                 ++vl e+ ++L+e+Dv++++v ++ +++k+++ +    ++ +e+e+ +++ ke+ ++ ++++ +k   +el            +++ kpnvil+vG+ G+GKTttiaK a++++++g k+ ++ +DTFrA+A +Ql++ a +l v+   + ++adp a++ +++++  ++ ++v+++DT+GR +++  L++e++ i   +       pd+v+lv+dat+Gq  + qa +F++av++ ++++TKlDg akgG +l+   +++ p+ ++g Ge+ dDL++F+a++fv++ll
  MMETSP1061-20121228|2609_1  30 KQVLSEVARALIESDVNVRLVMTLRDNVKQKVERliedDEDSENEDDSDAKKEQRASNVSKMVQKAVVDELvqllepsrkPYVMKRGKPNVILFVGLQGAGKTTTIAKYANYYQRRGWKTAMVCADTFRAGAFDQLKQNATKLRVPFYGSYTQADPVAIAEEGVDQFVKEHYEVIIVDTSGRHRQEAGLLEEMQEISAAVA------PDNVVLVMDATQGQAVYDQASAFSNAVDVGSVVITKLDGHAKGGGALSAVAATESPIVFLGSGEHFDDLEPFNAQSFVSKLL 312
                 68999***********************9987642211344444445555555555555555555444444566787766567899**************************************************************************************************************99888......*******************************************************************************996 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   1.3   5.2e-21   1.9e-18     121     286 .]      38     210 ..       4     210 .. 0.65
   2 ?   -1.1   0.2      0.86   3.2e+02      99     131 ..     459     491 ..     403     511 .. 0.58

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 5.2e-21
   TIGR03499 121 kellekqlselal..eeedperakllkklleagvseelarelleklke.kedaeeareklreaLekklsvkkeedeilekgg...viaLvGptGvGKTTTlAKLAarfvlehgkkkValiTtDtyRiGAveQLktYakilgvpvkvvkdpkeleealee....l..kdkdliLiDTaG 286
                 ++l+e+ ++   l    +d++++k+++  ++ + se+  ++ ++k ++ ++ ++ +++++ + L + l  ++ +++   k+g   vi++vG  G GKTTT+AK A ++  + g  k a++ +Dt+R GA++QLk+ a  l vp++  +++++   + ee    +  +++++i++DT G
  MMETSP1061-20121228|2609_1  38 RALIESDVNVR-LvmTLRDNVKQKVERLIEDDEDSENEDDSDAKKEQRaSNVSKMVQKAVVDELVQLL--EPSRKPYVMKRGkpnVILFVGLQGAGKTTTIAKYANYYQRR-GW-KTAMVCADTFRAGAFDQLKQNATKLRVPFYGSYTQADPVAIAEEgvdqFvkEHYEVIIVDTSG 210
                 34444444432.24555555555555555555555555555555544455666777777788888888..455554433322233*********************99987.66.9****************************9888877754444332222333667899999988 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.86
   TIGR03499  99 aqeaekkleeaeeelrkelkalkellekqlsel 131
                  ++a+ ++++ ++++r++ + +++ l+++  +l
  MMETSP1061-20121228|2609_1 459 GKQAQAQQQALAAQMRRNPNFINQRLNQMDPKL 491
                 333333333333555555555555555444443 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       3.4   1.3e+03      74     101 ..      33      60 ..      25      92 .. 0.58
   2 !   17.1   0.0   2.1e-06    0.0008       4      97 ..     119     244 ..     116     270 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 3.4
   TIGR00231  74 vreverslevvdivil.vldveeglekqt 101
                 + ev+r l + d++++ v ++++++ kq+
  MMETSP1061-20121228|2609_1  33 LSEVARALIESDVNVRlVMTLRDNV-KQK 60 
                 4555555555555543133444444.222 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 2.1e-06
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskp....gvtrdyvteqieedGkt.............................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveegl 97 
                   i++vG  ++GK+t++ +++ ++ +    ++     ++r  + +q +++  +                             y+v ++DT G+ +  +   l   +  + +   d v+lv d+ +g 
  MMETSP1061-20121228|2609_1 119 NVILFVGLQGAGKTTTIAKYANYYQRRGWKTAmvcaDTFRAGAFDQLKQNATKlrvpfygsytqadpvaiaeegvdqfvkehYEVIIVDTSGRHRQ-EAGLLEEMQEISAAVAPDNVVLVMDATQGQ 244
                 679*****************999977776666666777777788888888877***************************************7777.444444445556666667777778777765 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.34   1.3e+02     236     289 ..      14      69 ..       3      77 .. 0.64
   2 !   14.0   0.0   1.1e-05    0.0042      30      71 ..     114     155 ..     108     162 .. 0.91
   3 ?   -2.4   0.1       1.1   4.2e+02     127     145 ..     201     219 ..     182     271 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.34
   TIGR00750 236 hkkvlkksGkleekrrersv.eelkklveeevlkkvkak.eevyrdllekvkakel 289
                  +k+ ++sG++++ + +++  e ++ l+e++v  ++  +  ++ ++ +e++ +++ 
  MMETSP1061-20121228|2609_1  14 LRKLHTRSGHVTATQLKQVLsEVARALIESDVNVRLVMTlRDNVKQKVERLIEDDE 69 
                 45667889999888777765155678999999766554404566666666655554 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 1.1e-05
   TIGR00750  30 ktGrahvvGltGvPGaGkstlveklieelrrrGlkvaviavD 71 
                 k G+ +v+ + G+ GaGk t + k ++  +rrG k a++  D
  MMETSP1061-20121228|2609_1 114 KRGKPNVILFVGLQGAGKTTTIAKYANYYQRRGWKTAMVCAD 155
                 6799999*******************************9887 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.1
   TIGR00750 127 fDvilvetvGvGqsevdii 145
                 ++vi+v+t G  + e  ++
  MMETSP1061-20121228|2609_1 201 YEVIIVDTSGRHRQEAGLL 219
                 6777777777665554433 PP

>> TIGR03708  poly_P_AMP_trns: polyphosphate:AMP phosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   3.6e-05     0.013       8      77 ..      86     155 ..      80     229 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.6e-05
   TIGR03708   8 kkldkkeykkqveelrekllelqrellekaeipviilleGvdgagkgetinllnewlDpRgievaafaep 77 
                 ++++k   k+ v+el + l    +  + k+++p +il+ G++gagk++ti +  ++   Rg ++a + + 
  MMETSP1061-20121228|2609_1  86 SNVSKMVQKAVVDELVQLLEPSRKPYVMKRGKPNVILFVGLQGAGKTTTIAKYANYYQRRGWKTAMVCAD 155
                 567777778888888888888888888899*******************************998776554 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   4.5e-05     0.017     892     974 ..      56     136 ..      49     155 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.5e-05
   TIGR01257 892 ralekteplteeledpeypegindsffer..elpglvpgvcvknlvkifepsgrpavdrlnitfyenqitaflghngagktttls 974
                    +k e l e+ ed e  +  +    +r  +   +v   +v +lv+++eps +p v +      + ++  f+g +gagkttt++
  MMETSP1061-20121228|2609_1  56 NVKQKVERLIEDDEDSENEDDSDAKKEQRasNVSKMVQKAVVDELVQLLEPSRKPYVMKRG----KPNVILFVGLQGAGKTTTIA 136
                 5567899999999999876655444433422456799999***************997654....678999************97 PP

>> TIGR01007  eps_fam: capsular exopolysaccharide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00093      0.35      27      58 ..     127     158 ..     117     172 .. 0.86
   2 ?    1.5   0.0      0.11        41     123     160 ..     196     240 ..     190     260 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00093
   TIGR01007  27 ageGkstvsaniavafaqaGyktLliDgDlrk 58 
                 +g+Gk+t+ a  a  + + G+kt ++ +D+ +
  MMETSP1061-20121228|2609_1 127 QGAGKTTTIAKYANYYQRRGWKTAMVCADTFR 158
                 589*************************9855 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.11
   TIGR01007 123 tlrkyfDyiiiDtpP.....igvviDaaiiarav..dasiLvvea 160
                  +++++++ii+Dt+       g++ + + i+ av  d+++Lv++a
  MMETSP1061-20121228|2609_1 196 FVKEHYEVIIVDTSGrhrqeAGLLEEMQEISAAVapDNVVLVMDA 240
                 4789********974222224555555555554433566666666 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00018     0.069     104     148 ..      99     144 ..      79     156 .. 0.69
   2 ?   -3.2   0.0       2.2   8.2e+02     177     199 ..     458     480 ..     450     481 .. 0.86
   3 ?   -1.1   0.7      0.49   1.8e+02     298     325 ..     570     597 ..     568     601 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00018
   TIGR01420 104 tleelglpevlkelaek.krGlilvtGptGsGKsttlAslidyink 148
                 +l +l  p+    ++++ k  +il++G  G+GK+tt+A   +y  +
  MMETSP1061-20121228|2609_1  99 ELVQLLEPSRKPYVMKRgKPNVILFVGLQGAGKTTTIAKYANYYQR 144
                 4555555544444444414679****************99888766 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.2
   TIGR01420 177 vgldtesfanaLraalRedPDvi 199
                 vg++++  ++aL a +R +P+ i
  MMETSP1061-20121228|2609_1 458 VGKQAQAQQQALAAQMRRNPNFI 480
                 78888999999999999999876 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.49
   TIGR01420 298 teqikevlqegakeGmqtldqslaklvk 325
                 ++q+ +++ +g   Gm  ++q ++++++
  MMETSP1061-20121228|2609_1 570 MQQMMQAMAQGGGGGMPNMQQMMQAMAQ 597
                 6899*****************9998776 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   3.6      0.45   1.7e+02     416     485 ..      26      95 ..       3     109 .. 0.50
   2 ?    8.5   0.3   0.00035      0.13      28      45 ..     118     135 ..     104     138 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.45
   TIGR03185 416 tvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkelkektkqkedaeelervikla 485
                 + + ++ ++e+  +l e  ++v  + + +++ ++k+e+l e  e+  +e ++ +k+++ a ++ ++++ a
  MMETSP1061-20121228|2609_1  26 ATQLKQVLSEVARALIESDVNVRLVMTLRDNVKQKVERLIEDDEDSENEDDSDAKKEQRASNVSKMVQKA 95 
                 3333344444555555555555555555555555555555555555555455555555555555555443 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00035
   TIGR03185  28 kpiiLlgglNGaGKTTlL 45 
                  ++iL+ gl GaGKTT++
  MMETSP1061-20121228|2609_1 118 PNVILFVGLQGAGKTTTI 135
                 57**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       431  (0.105071); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.13s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2024.91
//
Query:       MMETSP1061-20121228|2612_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.09s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 686.34
//
Query:       MMETSP1061-20121228|2614_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 952.21
//
Query:       MMETSP1061-20121228|2617_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|2610_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 966.82
//
Query:       MMETSP1061-20121228|2618_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|2620_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.3   0.3      0.023   10.8   0.2    1.1  1  TIGR01706 NAPA: periplasmic nitrate reductase, large subunit
      0.039   11.8   4.0       0.15    9.9   0.2    2.6  2  TIGR02808 short_TIGR02808: TIGR02808 family protein


Domain annotation for each model (and alignments):
>> TIGR01706  NAPA: periplasmic nitrate reductase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   1.1e-05     0.023     657     688 ..     156     188 ..     148     201 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.1e-05
   TIGR01706 657 glrw.pvvngketkwrykegsdpyvkagagfkf 688
                 glrw   v+g et w ++  +d yv++ +   f
  MMETSP1061-20121228|2620_1 156 GLRWwNKVDGDETTWIFESAKDRYVNKFDSSVF 188
                 8996378******************98776555 PP

>> TIGR02808  short_TIGR02808: TIGR02808 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   7.4e-05      0.15      24      38 ..     127     141 ..     125     143 .. 0.90
   2 ?    2.2   0.2     0.018        37       6      12 ..     186     192 ..     185     206 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.4e-05
   TIGR02808  24 GFvaVaVvsilLLal 38 
                  F+ V V++ilLLa+
  MMETSP1061-20121228|2620_1 127 NFITVTVICILLLAA 141
                 59***********97 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.018
   TIGR02808   6 sviWhvL 12 
                 sv+W+vL
  MMETSP1061-20121228|2620_1 186 SVFWTVL 192
                 89****9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 908.21
//
Query:       MMETSP1061-20121228|2624_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1061-20121228|2619_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 983.09
//
Query:       MMETSP1061-20121228|2623_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.81    5.6   7.8          1    5.3   5.4    1.1  1  TIGR02302 aProt_lowcomp: TIGR02302 family protein


Domain annotation for each model (and alignments):
>> TIGR02302  aProt_lowcomp: TIGR02302 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.4   0.00025         1     591     653 ..     240     307 ..     223     346 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00025
   TIGR02302 591 qllsqlqrlln..nlqmgqarqgqqnGeqsgdleqq....lnklGelirkqqqlvdetfkldqklrrdr 653
                 +lls ++r+++  nl  gq+ q  +  +q ++l+qq    ++kl +l+++qqq++++  +++ k  ++ 
  MMETSP1061-20121228|2623_1 240 KLLSLMNRVVDsgNLIFGQSSQSLSPCQQ-EELQQQqchlMEKLDQLFQQQQQIMQNLNEQQTKFCNNA 307
                 57777888876559999999999777775.45554447779**************99888877665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1378.55
//
Query:       MMETSP1061-20121228|2627_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.8    5.3  11.6       0.64    8.4   0.5    2.4  2  TIGR03901 Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain


Domain annotation for each model (and alignments):
>> TIGR03901  Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.5   0.00016      0.64       7      23 ..      27      44 ..      20      45 .. 0.74
   2 ?    1.2   3.1     0.028   1.1e+02       5      23 ..      52      67 ..      50      73 .. 0.40

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00016
   TIGR03901  7 ggaggagp.galgLlgLg 23
                g+ +++gp +a++Ll Lg
  MMETSP1061-20121228|2627_1 27 GDSSHGGPkAAAALLSLG 44
                344455559******998 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.028
   TIGR03901  5 saggaggagpgalgLlgLg 23
                s+++++    +a+++++++
  MMETSP1061-20121228|2627_1 52 STSAEAE---AAAAAAVAA 67
                3333332...333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 326.67
//
Query:       MMETSP1061-20121228|2629_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-50  166.0  23.2    2.4e-47  157.5  11.8    2.0  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
  ------ inclusion threshold ------
      0.028   12.5   2.0       0.22    9.6   0.0    2.1  2  TIGR03932 PIA_icaD: intracellular adhesion protein D
       0.86    7.3   7.5        4.4    5.0   0.3    2.6  2  TIGR02972 TMAO_torE: trimethylamine N-oxide reductase system, TorE protein


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5  11.8   1.7e-50   2.4e-47       1     108 []      14     125 ..      14     125 .. 0.96
   2 !   12.4   0.2   2.1e-05     0.029      38      67 ..     133     162 ..     127     166 .. 0.84

  Alignments for each domain:
  == domain 1    score: 157.5 bits;  conditional E-value: 1.7e-50
   TIGR01100   1 ffgvlGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkekek....yslykgfihlgaGlavGlsglaaGlaiGivGdagv 108
                 ffg++G+++alvf+++GaayGtaksgvGi+++gv++p l++++iipvvmaG+++iyGl+vav+i+gs+ + ++    ysly+gf+hl+aGl++GlsglaaG+aiGivGdagv
  MMETSP1061-20121228|2629_1  14 FFGFMGVTSALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSIVAPQNglsqYSLYTGFAHLAAGLCCGLSGLAAGMAIGIVGDAGV 125
                 9******************************************************************9876544445*********************************98 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 2.1e-05
   TIGR01100  38 elilksiipvvmaGiiaiyGlvvavliags 67 
                 +l +  i+ +++a  +++yGl+va++++++
  MMETSP1061-20121228|2629_1 133 KLFVGMILILIFAEALGLYGLIVALILSQN 162
                 45667788899***************9875 PP

>> TIGR03932  PIA_icaD: intracellular adhesion protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00016      0.22       7      37 ..      53      83 ..      50      90 .. 0.90
   2 ?    1.9   0.4      0.04        54      11      31 ..     139     159 ..     132     167 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00016
   TIGR03932  7 ilrEivlfiislvfWlYclivvivligtlfe 37
                ++r+i+ +++++v+ +Y liv +++ g+++ 
  MMETSP1061-20121228|2629_1 53 VMRNIIPVVMAGVLGIYGLIVAVIIQGSIVA 83
                6899*********************999976 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.04
   TIGR03932  11 ivlfiislvfWlYclivvivl 31 
                 i+++i + ++ lY liv ++l
  MMETSP1061-20121228|2629_1 139 ILILIFAEALGLYGLIVALIL 159
                 667788899999999998886 PP

>> TIGR02972  TMAO_torE: trimethylamine N-oxide reductase system, TorE protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   1.2    0.0034       4.7      21      39 ..      58      76 ..      52      81 .. 0.85
   2 ?    5.0   0.3    0.0032       4.4      27      39 ..     146     158 ..     131     164 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0034
   TIGR02972 21 FPiLsvavvggYGfivWll 39
                 P+   +v+g YG+iv ++
  MMETSP1061-20121228|2629_1 58 IPVVMAGVLGIYGLIVAVI 76
                5999999********9654 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0032
   TIGR02972  27 avvggYGfivWll 39 
                  ++g+YG+iv l+
  MMETSP1061-20121228|2629_1 146 EALGLYGLIVALI 158
                 578*******887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 857.93
//
Query:       MMETSP1061-20121228|2628_1  [L=929]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.9e-120  399.5   0.0   1.1e-118  395.4   0.0    2.2  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
    3.8e-80  267.3   0.3    4.2e-69  231.0   0.1    2.4  2  TIGR00553 pabB: aminodeoxychorismate synthase, component I
    7.7e-72  240.5   0.4    1.6e-70  236.2   0.3    2.6  1  TIGR00564 trpE_most: anthranilate synthase component I
    2.6e-71  238.6   0.1    3.9e-61  205.1   0.0    2.4  2  TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I
    2.3e-67  226.1   0.0    8.5e-53  178.0   0.0    2.5  2  TIGR01820 TrpE-arch: anthranilate synthase component I
    1.2e-60  203.1   0.7    4.2e-22   75.7   0.1    4.1  4  TIGR01815 TrpE-clade3: anthranilate synthase
    2.2e-39  133.6   0.0    2.9e-36  123.2   0.0    2.2  2  TIGR00565 trpE_proteo: anthranilate synthase component I
    1.7e-38  130.2   0.0      6e-23   79.4   0.0    2.3  2  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    1.1e-25   88.0   0.0    5.9e-14   49.7   0.0    2.3  2  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    1.2e-21   75.1   0.0    4.2e-20   70.1   0.0    2.2  2  TIGR00543 isochor_syn: isochorismate synthase
    7.3e-18   62.5   0.1    2.9e-12   44.0   0.0    2.2  2  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    1.9e-16   57.7   0.0    2.9e-16   57.1   0.0    1.2  1  TIGR03494 salicyl_syn: salicylate synthase
    9.3e-07   26.7   0.0    0.00099   16.8   0.0    2.3  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
    0.00073   16.1   0.0      0.018   11.5   0.0    2.1  2  TIGR00337 PyrG: CTP synthase


Domain annotation for each model (and alignments):
>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  395.4   0.0  3.6e-121  1.1e-118       7     738 ..      44     896 ..      39     899 .. 0.78

  Alignments for each domain:
  == domain 1    score: 395.4 bits;  conditional E-value: 3.6e-121
   TIGR01823   7 nvLfiDayDsftynvvallekal.dvrvsvitvhsDkld.ddllellqlfdaivvGPGPGdPnvakdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGqvsevktsdaaifegvss.......................................vkstryhsLyankesidsllalilledeedqilmsvkakkkPifGvqyhPesvksekesvkllknflklalinnvktgrsekkklsksasdisssldrtdaadailklkekspsr....ssyrkvearsldpkvvaeilnasrepkvlldssvk...tGrysiiavpssasqvleyyg...allkekvhyrkdteisetrlkkaesiverdl...tksqlWstlakfmetkkvdkgdlevPfy..GGllGilgyeig...............rdksa..ksiatasenedanelvaDakLvfversivvdhktgklyvqsldvtdevarewlg.......dLaastvrkkvikssl....saefldkeeidlvikfPkkedyakavkaCqeeleaGdsyelCLtdetlvvl.paevsqdwelykrlrklnPaafsgfvrlkhvk.............................llsssPekflevdrds.........rlklkPikGtvkk...eedmsle.........karkiLksekelgenlmilDLirnDLyelvkkgdvrveellsveeharvyqlvsvvkakvessaskktrysgldvLkkslPPGsmtGaPkkrsvrlLedvedr.krGiysGvlGyldvtgsgefsvlirsafkyk..dedlWr..iGaGGavtvLstpeGeyeemltklesvl 738
                  +L iD yDsftyn+v++l + + d  v v    ++ +d ddl   + +fd iv+ PGPG P   ++   ls++        vP+lG+CLG q l+La G  ++r p+p hGq +++  +d   +++ s+                                       ++++ryhsL a  + ++s  + + +    d ++ +++++ +P++Gvq+hPes+++e++ + ll+nf+++  ++ ++ +  + +  ++ + ++ss  + +  ++   +   + +sr     +    e++s+ p  v+e+  a ++ ++ ldss      G+  i+a ps a  v+ey+        + +  r + e+ e   + a   v  ++         + l+ + e+   d+    +Pf   GG+lG+lgye+                +d++   ++ +    ++   + v+ a +    +s+v  h t+  y + l ++++  +e l        dL+   ++     + +        ++++ +++v + P ke y++ v +C e +++GdsyelCLt++    + +++vs  +elyk +r+ nPa++s+++r +                                + sssPe+f+ + r++         +++ kPikGt  +   ++   l          +ar   +s k+ +enlmi+DL+rnD+  ++k g+v+v +l+++e +a+v+q+vs++++    s        ++d L+ s+P GsmtGaPk r++++Led+e++  rG ysG lGyl+v+g  + +++irsa       +d W+  iGaGGa+t Ls  e ey+eml+k+++v 
  MMETSP1061-20121228|2628_1  44 SLLVIDHYDSFTYNLVDMLAQITvDPPVVVAKDAFEAVDrDDLSSFFGKFDGIVLSPGPGTP---QEQPPLSHLAISE-NPDVPILGVCLGHQLLSLAYGGRVDRAPIPIHGQDHQIIHKDPWEINDSSNsnsnhnnnnnndndndnnndshgkpssrypslfrdisssFRVVRYHSLCAY-DLPES--LAV-TARSRDDVVQAIQHESNPHYGVQFHPESIGTENG-MALLENFVQVVEQQQKRQTVVGSG-ANDAMREASSTSEPPVSTSGPSDSLPEPSSRfrvmVHRIPSEIPSISPLRVFETFYARGSHTIWLDSSSHhtgRGEMDILAAPSRADDVIEYHIdenDGNGNDILSRLEKELFEKGANGASPAVT-NVgwvRFGTDGEALEWVPENGESDSDGEALPFNyrGGFLGFLGYEVRhdtqrylqhmeggalKDQTKgrNGNEKEIDKDGSRNRVPTAAFFLARQSMVYHHSTDTWYLIGLAEQENDIQENLAwmkqvdkDLRLIATKGTSEPRIVpppsDSREMQRRPLEFVPNRP-KETYKEDVAKCHECIKKGDSYELCLTNQLEARVsSTNVS-TFELYKIIREVNPAPYSSYFRWNLSSdsnsnsnsnsnsnrdpekaadmpsrtslvICSSSPERFMSISRQQphpeippflQAEAKPIKGTCARvmpQNGFCLTdaesreddrRARSLELSIKNRAENLMIVDLLRNDMSRVCKTGSVHVSKLMDIESFATVHQMVSTIRGTLSDSCN------SIDLLRASFPGGSMTGAPKIRTMEILEDLEENvDRGPYSGSLGYLSVNGCMDMNIMIRSATVTPteTKDEWKvsIGAGGAITALSEAEDEYDEMLLKARAVK 896
                 689*****************987244344444444555599*********************...7777788876555.4569*********************************98877665555544477889999999************************9999*******9885.66788..334.4455667899***********************7.9********998887765544444.344455555555555444444443333333323114444568999*********************9987877789****************985552233334444444444444443333333.22222223334689999********99****9445***********999999999998888744443003333344445566788999999999****************988776666655545588776654444333333333000033333444455666555.699************************988755056788.6*********************9888999*************************9999*********99975555555556899******8773323334454111111111355566799*************************************************9999988......9****************************87538*************************9876534667787558***********************9985 PP

>> TIGR00553  pabB: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.1e-11   3.3e-09      66     128 ..     573     638 ..     450     650 .. 0.82
   2 !  231.0   0.1   1.4e-71   4.2e-69     132     328 ..     671     894 ..     652     895 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.1e-11
   TIGR00553  66 ieveitraeyaeaikkvqeelkaGdvYqanltqqleatldgd...plalyrklrkeqpapfsafle 128
                 +  +  ++ y+e ++k++e +k+Gd Y+ +lt+qlea ++ +    ++ly+ +r+ +pap+s++ +
  MMETSP1061-20121228|2628_1 573 FVPNRPKETYKEDVAKCHECIKKGDSYELCLTNQLEARVSSTnvsTFELYKIIREVNPAPYSSYFR 638
                 444555899***************************9887651116789999***********986 PP

  == domain 2    score: 231.0 bits;  conditional E-value: 1.4e-71
   TIGR00553 132 kavlslSpElFlsvdgse..........letkPiKGTlpr..........gadpeeDraqasaLaeseKdraEnlmivDLlRnDlgRiaevgsvkvdelfevetyptvhqlvstvkarlreeltlsdllralFPggSiTGaPKlrameiikelEk.qrRgvYcGaiGllspegeldlnvaIRTlelsg......geavlgvGggivadSdaeaEfeEvllKakv 328
                   + s+SpE+F+s+++++           e+kPiKGT +r          +a+ +eD + a+ L+ s K+raEnlmivDLlRnD++R++++gsv+v++l+++e ++tvhq+vst+++ l++  +  dllra FPggS+TGaPK+r+mei+++lE+   Rg Y+G++G+ls +g +d+n+ IR  +++        ++ +g+Gg+i+a S+ae+E++E+llKa+ 
  MMETSP1061-20121228|2628_1 671 LVICSSSPERFMSISRQQphpeippflqAEAKPIKGTCARvmpqngfcltDAESREDDRRARSLELSIKNRAENLMIVDLLRNDMSRVCKTGSVHVSKLMDIESFATVHQMVSTIRGTLSDSCNSIDLLRASFPGGSMTGAPKIRTMEILEDLEEnVDRGPYSGSLGYLSVNGCMDMNIMIRSATVTPtetkdeWKVSIGAGGAITALSEAEDEYDEMLLKARA 894
                 5789*********998743344444433479*******994444444444467789*************************************************************************************************86268************************77766555665567889***********************96 PP

>> TIGR00564  trpE_most: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.2   0.3   5.6e-73   1.6e-70     112     454 ..     489     899 ..     421     900 .. 0.81

  Alignments for each domain:
  == domain 1    score: 236.2 bits;  conditional E-value: 5.6e-73
   TIGR00564 112 eaedelelpdlllllvetvivfDhvekkvilienarteaersaeeeaaarleellaelqkeleka...vkaleekkes........ftsnvekeeyeekvakakeyikaGdifqvvlSqrleakveak...pfelYrkLRtvNPSpylyyldled.............................felvgsSPEllvkvk..........gkrvetrPiAGtrkR.....G.....atkeeDealeeeLladeKerAEHlmLvDLaRNDigkvaklgsvevkellkiekyshvmHivSeVeGelkdeltavDalraalPaGTlsGAPKvrAmelidelEk.ekRgiYgGavgylsfdgdvdtaiaiRtmvl......kdgvayvqAgaGiVaDSdpeaEyeEtlnKakallrai 454
                 +   + ++p ++++l ++ +v+ h +++ +li  a++e++ + + + ++++++ l+ + ++ +++   v+ + ++           f +n  ke+y+e+vak +e ik+Gd +   l ++lea+v+ +   +felY+ +R+vNP+py  y+  +                              + + +sSPE+++ ++            + e +Pi Gt  R     G     a+++eD++ ++ L  + K+rAE lm+vDL RND+++v+k+gsv+v++l++ie++  v  +vS+++G+l d  +++D lra++P G ++GAPK+r me++++lE+ + Rg+Y+G++gyls++g +d+ i iR++ +       ++++++ Ag+ i a S+ e+Ey+E l Ka+a+++a+
  MMETSP1061-20121228|2628_1 489 KDGSRNRVPTAAFFLARQSMVYHHSTDTWYLIGLAEQENDIQENLAWMKQVDKDLRLIATKGTSEpriVPPPSDS--RemqrrpleFVPNRPKETYKEDVAKCHECIKKGDSYELCLTNQLEARVSSTnvsTFELYKIIREVNPAPYSSYFRWNLssdsnsnsnsnsnsnrdpekaadmpsrtsLVICSSSPERFMSISrqqphpeippFLQAEAKPIKGTCARvmpqnGfcltdAESREDDRRARSLELSIKNRAENLMIVDLLRNDMSRVCKTGSVHVSKLMDIESFATVHQMVSTIRGTLSDSCNSIDLLRASFPGGSMTGAPKIRTMEILEDLEEnVDRGPYSGSLGYLSVNGCMDMNIMIRSATVtptetkDEWKVSIGAGGAITALSEAEDEYDEMLLKARAVKEAV 899
                 22335679***************************9999998677778888877777766655443343322222..1235566779999999*****************************9976544449******************98765557999*********************9888899******99875444333322235689******9995555524433367789*************************************************************************************************85269**************************99999997789******************************9987 PP

>> TIGR01824  PabB-clade2: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   1.1e-10   3.3e-08      24     155 ..     492     639 ..     481     650 .. 0.72
   2 !  205.1   0.0   1.3e-63   3.9e-61     159     355 .]     672     895 ..     648     895 .. 0.85

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 1.1e-10
   TIGR01824  24 eekglpvlallryeaavaldee...eqivavaeaeae..kegaf.ataadalaavaaatslaspdvgplaadleal.........idraayetavkrikdyikaGdvfQaNlsrrltaria.aevdplalfealraanpapyaillee 155
                 +++ +p++a + +   ++ ++      ++ +ae+e +  ++ a+ ++  ++l ++a+  +++   v+p++   e++          ++++y+ +v++ ++ ik+Gd +   l+++l+ar+  ++v +++l++  r+ npapy+++++ 
  MMETSP1061-20121228|2628_1 492 SRNRVPTAAFFLARQSMVYHHStdtWYLIGLAEQENDiqENLAWmKQVDKDLRLIATKGTSEPRIVPPPSDSREMQrrplefvpnRPKETYKEDVAKCHECIKKGDSYELCLTNQLEARVSsTNVSTFELYKIIREVNPAPYSSYFRW 639
                 5566666666666666666555544344555554443103334413445567777766666555566666444554777777777789********************************9899*********************975 PP

  == domain 2    score: 205.1 bits;  conditional E-value: 1.3e-63
   TIGR01824 159 dvvsaSPElllkregre..........vqtrPIaGTrarg..........adlaeDealaaeLlaadKdrAEhvmivDLeRNDLgrvcetGtvevpellavesyaevlHlvSrVtgrLregleladlleAvFPggsiTGaPKvraleiIeelEp.trRgpytGsvgvidadGdadlnilIRTl......eaaearlelrvGaGivadSdpegEydEteaKaral 355
                  + s+SPE++++   ++          ++++PI+GT ar           a+  eD+ +a+ L  + K+rAE++mivDL RND++rvc+tG+v+v +l+ +es+a+v+ +vS+++g L ++++  dll+A+FPggs+TGaPK+r++ei+e+lE+ + Rgpy Gs+g++ ++G +d+ni+IR +      ++ e+++ +++G+ i+a S+ e+EydE + Kara+
  MMETSP1061-20121228|2628_1 672 VICSSSPERFMSISRQQphpeippflqAEAKPIKGTCARVmpqngfcltdAESREDDRRARSLELSIKNRAENLMIVDLLRNDMSRVCKTGSVHVSKLMDIESFATVHQMVSTIRGTLSDSCNSIDLLRASFPGGSMTGAPKIRTMEILEDLEEnVDRGPYSGSLGYLSVNGCMDMNIMIRSAtvtpteTKDEWKVSIGAGGAITALSEAEDEYDEMLLKARAV 895
                 4678899999865443222223333226899*****998533333333336789**************************************************************************************************86279************************8877998777789999999999******************986 PP

>> TIGR01820  TrpE-arch: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   4.1e-15   1.2e-12     123     244 ..     485     639 ..     334     643 .. 0.74
   2 !  178.0   0.0   2.9e-55   8.5e-53     261     448 ..     705     899 ..     669     900 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 4.1e-15
   TIGR01820 123 s.........eipeaefllvtkvlvfdhleeevslvvteevsad......eaekiveklkeaekeeeekkeaeleslaekee..................feeavekakekifeGdifqvvlSrklelrld...ldplelYaklreiNPSPYmyllef 244
                 +          +p+a+f+l  +++v+ h +++ +l+ + e++ d       ++++ + l+   ++ +++ + +    +   +                  ++e v+k +e i++Gd +   l ++le r++   ++ +elY+ +re+NP+PY  ++++
  MMETSP1061-20121228|2628_1 485 KeidkdgsrnRVPTAAFFLARQSMVYHHSTDTWYLIGLAEQENDiqenlaWMKQVDKDLRLIATKGTSEPRIVPPPSD---SremqrrplefvpnrpketYKEDVAKCHECIKKGDSYELCLTNQLEARVSstnVSTFELYKIIREVNPAPYSSYFRW 639
                 044444555589************************998887776665552233333333333333332222222222...0223555566666666666*************************999875334899****************99998 PP

  == domain 2    score: 178.0 bits;  conditional E-value: 2.9e-55
   TIGR01820 261 ekrtveinPiAGtapRgkseeeDeelakelLsdeKerAEHvmLvDLaRNDvrkvsesgsvkvsefmkvlkyshvqHieSevvgtLkkeadafdalkAvfPAGtlsGaPKirAmeiieelEk.epRgvYgGgvGyfslngdadlAiviRtaliek......kklriqaGAGivaDSdPekEfeEterKmkavlkai 448
                 ++   ++ P  G +  +++  eD + a++l  + K+rAE +m+vDL RND+ +v+++gsv+vs++m+++ ++ v  ++S++ gtL++ ++++d l+A fP G ++GaPKir mei+e+lE+ + Rg+Y+G++Gy+s+ng +d+ i+iR+a+++        k++i aG  i a S+ e E+ E   K++av++a+
  MMETSP1061-20121228|2628_1 705 KGTCARVMPQNGFCLTDAESREDDRRARSLELSIKNRAENLMIVDLLRNDMSRVCKTGSVHVSKLMDIESFATVHQMVSTIRGTLSDSCNSIDLLRASFPGGSMTGAPKIRTMEILEDLEEnVDRGPYSGSLGYLSVNGCMDMNIMIRSATVTPtetkdeWKVSIGAGGAITALSEAEDEYDEMLLKARAVKEAV 899
                 344455666666677789999**************************************************************************************************86268***************************9865666445677777777***********************98 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   2.5e-18   7.4e-16     517     626 ..      43     159 ..      18     167 .. 0.86
   2 !   57.7   0.0   4.1e-19   1.2e-16     616     714 ..     190     279 ..     182     282 .. 0.87
   3 !    9.5   0.0   0.00015     0.045     234     288 ..     580     637 ..     533     645 .. 0.82
   4 !   75.7   0.1   1.4e-24   4.2e-22     316     508 ..     713     910 ..     696     922 .. 0.80

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 2.5e-18
   TIGR01815 517 krillvdhedsfvhtlanylrqtGasvttlrhsvaeelldee.......rpdlvvlspGpGrpkdfdvketikaalardlpvfGvclGlqglveafGGeldvlaepvhGkasrirvl 626
                 +++l++dh dsf + l + l q       +    a e++d+        + d +vlspGpG+p++    + ++ + + d+p++GvclG q l  a+GG +d  ++p+hG+  +i   
  MMETSP1061-20121228|2628_1  43 VSLLVIDHYDSFTYNLVDMLAQITVDPPVVVAKDAFEAVDRDdlssffgKFDGIVLSPGPGTPQEQPPLSHLAISENPDVPILGVCLGHQLLSLAYGGRVDRAPIPIHGQDHQIIHK 159
                 6799******************9888777766666666666433334447899*********************************************************9998765 PP

  == domain 2    score: 57.7 bits;  conditional E-value: 4.1e-19
   TIGR01815 616 vhGkasrirvlepdvlfaglpeeltvGryhslfarsdrlpkelkvtaesedgvimaiehrklpvaavqfhpesiltlaGeaGlalienvvdklaksakt 714
                  hGk+s      p  lf +++ ++ v ryhsl a    lp+ l vta s d+v+ ai+h+  p   vqfhpesi     e G+al+en v+ + +++k 
  MMETSP1061-20121228|2628_1 190 SHGKPSSR---YP-SLFRDISSSFRVVRYHSLCAY--DLPESLAVTARSRDDVVQAIQHESNPHYGVQFHPESIG---TENGMALLENFVQVVEQQQKR 279
                 67777753...34.79****************996..6***********************************95...588999999999998888775 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00015
   TIGR01815 234 GeyaklvekakeafrrGdlfevvpgqkffeaceaaps...evferlkainpspyeffv 288
                   y++ v k +e +++Gd +e+  ++++  +  ++     e+++ ++++np+py+ ++
  MMETSP1061-20121228|2628_1 580 ETYKEDVAKCHECIKKGDSYELCLTNQLEARVSSTNVstfELYKIIREVNPAPYSSYF 637
                 459999****************99999988887765412267788999******9876 PP

  == domain 4    score: 75.7 bits;  conditional E-value: 1.4e-24
   TIGR01815 316 pisGtikrGddaiddaaqilkllnskkdeaeltmctdvdrndksrvcepGsvkviGrrqielysrlihtvdhveGrlrdeldaldaflshawavtvtGapkraalqfiekteksp.rrwyGGavGrlgfnGdlntGltlrtirlk..dgi....aevraGatllydsdpeaeeaetelkaaalieairdakaadaakees 508
                 p  G     +++ +d  + + l  s k+ ae  m  d+ rnd srvc+ Gsv+v     ie ++ +   v  + G l d  +++d + +     ++tGapk  +++++e+ e+ + r  y G++G+l+ nG ++  +++r+  +   ++       + aG ++   s+ e+e  e  lka a+ ea+++   a + +ee+
  MMETSP1061-20121228|2628_1 713 PQNGFCLTDAESREDDRRARSLELSIKNRAENLMIVDLLRNDMSRVCKTGSVHVSKLMDIESFATVHQMVSTIRGTLSDSCNSIDLLRASFPGGSMTGAPKIRTMEILEDLEENVdRGPYSGSLGYLSVNGCMDMNIMIRSATVTptETKdewkVSIGAGGAITALSEAEDEYDEMLLKARAVKEAVQKW--ASSIPEEA 910
                 445555555667788889999999*************************************************************998888899****************887763778********************9776641133311013455677888899999999**************953..33333333 PP

>> TIGR00565  trpE_proteo: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00083      0.24     152     280 ..     494     638 ..     484     644 .. 0.67
   2 !  123.2   0.0   9.8e-39   2.9e-36     303     495 ..     698     901 ..     694     904 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00083
   TIGR00565 152 dnvpdfifylaenlividhkeksveikaalfaer.eekqvaiakldlk....eaqkskkadfv.p..kvs..aasr..eveanlsdeefegvvkalkkeikkGeifqvvpsrrf....slecpetlaayyqlkksnPsPymfylk 280
                 + vp  +f+la++ +v  h   +  + +   +e+  ++++a  k+  k    +a k ++ + + p  + s  ++ r  e   n   e +++ v   ++ ikkG+ + + ++ ++    s +  +t+  y  +++ nP+Py  y++
  MMETSP1061-20121228|2628_1 494 NRVPTAAFFLARQSMVYHHSTDTWYLIGLAEQENdIQENLAWMKQVDKdlrlIATKGTSEPRIvPppSDSreMQRRplEFVPNRPKETYKEDVAKCHECIKKGDSYELCLTNQLearvSSTNVSTFELYKIIREVNPAPYSSYFR 638
                 47899999******99999999999999888887566666555543330111333333334331311222002222114456899999*******************99987661111445566777899999*******98875 PP

  == domain 2    score: 123.2 bits;  conditional E-value: 9.8e-39
   TIGR00565 303 qleiyPiaGtrprGkdadGnidrdldsr....lelelrldhkeraehlmlvdlarndlarvcksgkryvaellkvdrysnvmhlvsrvvGelrkeldalhayracmnmGtlsGaPkikalqliyqlenq.rrgsyGGavGyltseGdldtcivirsalvkngia....v..vqaGaGvvldsvPqseadetrakaravlkairk 495
                 q+e  Pi Gt  r   ++G   +d +sr        l+l  k+rae lm+vdl rnd++rvck+g+ +v++l+ ++ ++ v  +vs + G l + ++++   ra    G+++GaPki++++++ +le++  rg y G++Gyl+ +G +d  i+irsa v    +    +  + aG  +   s+   e de   karav +a++k
  MMETSP1061-20121228|2628_1 698 QAEAKPIKGTCARVMPQNGFCLTDAESReddrRARSLELSIKNRAENLMIVDLLRNDMSRVCKTGSVHVSKLMDIESFATVHQMVSTIRGTLSDSCNSIDLLRASFPGGSMTGAPKIRTMEILEDLEENvDRGPYSGSLGYLSVNGCMDMNIMIRSATVTPTETkdewKvsIGAGGAITALSEAEDEYDEMLLKARAVKEAVQK 901
                 78999**********9999876666555111155789999*************************************************************************************975428****************************7543311224115555556677899999**************987 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.4   0.0     2e-25     6e-23       2     113 ..      45     160 ..      44     172 .. 0.84
   2 !   48.4   0.0   6.9e-16     2e-13     117     191 ..     202     271 ..     188     272 .. 0.87

  Alignments for each domain:
  == domain 1    score: 79.4 bits;  conditional E-value: 2e-25
   TIGR00566   2 vllidnydsftynlvqlleelg.aevvvkrndsltlqeieallplls....ivisPGPctPdeaaissleliehlaGklPilGvClGhqalaqafGadvvraekvkhGkvseiehng 113
                 +l+id ydsftynlv++l++ + +  vv  +d+++  + ++l++ +     iv+sPGP+tP+e     ++l    +  +PilGvClGhq l++a G+ v ra    hG+  +i h++
  MMETSP1061-20121228|2628_1  45 LLVIDHYDSFTYNLVDMLAQITvDPPVVVAKDAFEAVDRDDLSSFFGkfdgIVLSPGPGTPQEQPPL-SHLAISENPDVPILGVCLGHQLLSLAYGGRVDRAPIPIHGQDHQIIHKD 160
                 79*******************953345556677777777777777666669***********98765.4555556789*************************99********9988 PP

  == domain 2    score: 48.4 bits;  conditional E-value: 6.9e-16
   TIGR00566 117 faglfnPdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPesilselGkellanflk 191
                 f+ +++  ++++ ryhsl   a  l++ l vta +  +  + ai+h+  p  GvqfhPesi +e+G +ll+nf++
  MMETSP1061-20121228|2628_1 202 FRDISS--SFRVVRYHSLC--AYDLPESLAVTARSRDD-VVQAIQHESNPHYGVQFHPESIGTENGMALLENFVQ 271
                 444444..59*******97..789*********99888.9*********************************96 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   3.3e-12   9.8e-10      41     101 ..      92     152 ..      45     172 .. 0.74
   2 !   49.7   0.0     2e-16   5.9e-14     110     185 ..     199     273 ..     195     277 .. 0.94

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 3.3e-12
   TIGR00888  41 epkgiilsGgPesvkaenaekvdekifelgvPvlGiCyGmqllakalGgeveraekreygk 101
                 +  gi+ls gP   +++   +  +   + +vP+lG+C+G+qll+ a+Gg+v+ra    +g+
  MMETSP1061-20121228|2628_1  92 KFDGIVLSPGPGTPQEQPPLSHLAISENPDVPILGVCLGHQLLSLAYGGRVDRAPIPIHGQ 152
                 347*********99999988888888899************************98766665 PP

  == domain 2    score: 49.7 bits;  conditional E-value: 2e-16
   TIGR00888 110 delfkglekelkvWmshgDkvkelPegfkvlaksencpvaalkkeekklyGvqfhPevthtekGkellenfvkdvc 185
                  +lf+++ ++++v   h     +lPe   v+a+s    v+a+++e+++ yGvqfhPe   te+G++llenfv+ v+
  MMETSP1061-20121228|2628_1 199 PSLFRDISSSFRVVRYHSLCAYDLPESLAVTARSRDDVVQAIQHESNPHYGVQFHPESIGTENGMALLENFVQ-VV 273
                 579*********************************************************************9.44 PP

>> TIGR00543  isochor_syn: isochorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.046        14      12     140 ..     490     633 ..     483     646 .. 0.58
   2 !   70.1   0.0   1.4e-22   4.2e-20     180     347 ..     721     897 ..     715     899 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.046
   TIGR00543  12 eekweefaealfvlpevlveeeg.estlltleikaesea....eeaeelllallavlavikalealsesltekakk...........eeidkeawaeaveealeeirqgkleKvVLarelelklaed.ievaavleelrqqnkday 140
                  ++++  ++a+f+l++ ++++++ + t+  + ++ e+e+    + a+ +++++  +l ++k  +  ++ ++  ++             ++ ke+++e v++  e i++g+   + L ++le+  ++  ++ +++ + +r+ n++ y
  MMETSP1061-20121228|2628_1 490 DGSRNRVPTAAFFLARQSMVYHHsTDTWYLIGLA-EQENdiqeNLAWMKQVDKDLRLIATK-GTSEPRIVPPPSDSremqrrplefvPNRPKETYKEDVAKCHECIKKGDSYELCLTNQLEARVSSTnVSTFELYKIIREVNPAPY 633
                 4556667777777776655555404444444443.44443433223333333322222222.2222222222222245667777777778899**************************999866543777766666666666655 PP

  == domain 2    score: 70.1 bits;  conditional E-value: 1.4e-22
   TIGR00543 180 sadkeedaklgekllkdeKnlrEhqlVvekirreLekice..slevsekpellklakvqHLytkikarlkkeksllkllkqLhPTPAvgGlPreeAlelirei.EtfdRglYaapiGwldkegngefiVaiRSalvede....q..vrlyAGaGivadSdpesEweEvelKlatllr 347
                 +a++ ed + ++ l  + Kn+ E+ ++v+ +r+++  +c+  s++vs+ +++   a+v  + + i++ l++  + ++ll++  P   + G P+ + +e++++  E+ dRg Y++++G+l+ +g  ++ + iRSa+v++     +  v + AG+ i a S++e+E+ E+ lK++++ +
  MMETSP1061-20121228|2628_1 721 DAESREDDRRARSLELSIKNRAENLMIVDLLRNDMSRVCKtgSVHVSKLMDIESFATVHQMVSTIRGTLSDSCNSIDLLRASFPGGSMTGAPKIRTMEILEDLeENVDRGPYSGSLGYLSVNGCMDMNIMIRSATVTPTetkdEwkVSIGAGGAITALSEAEDEYDEMLLKARAVKE 897
                 5678899999****************************9844689999999*******************99*****************************972689****************9************753222222488999999*****************998766 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   9.9e-15   2.9e-12     185     287 ..      54     162 ..       8     191 .. 0.78
   2 !   16.1   0.0     3e-06   0.00089     316     360 ..     231     274 ..     221     275 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 9.9e-15
   TIGR01368 185 vKenilreLvkrgvevtvvpadtsaeeikklnp.......dgillsnGPGdPaaveeaietvkklleakiPifGIclGhqllalalgaktyklkfGhrGaNhpvkdlktg 287
                 +  n +++L++  v+  vv a+  +e++ + +        dgi+ls GPG P++  +  +      + ++Pi+G+clGhqll+la+g+++ +     +G+ h ++  +  
  MMETSP1061-20121228|2628_1  54 FTYNLVDMLAQITVDPPVVVAKDAFEAVDRDDLssffgkfDGIVLSPGPGTPQEQPPLSHLA-ISENPDVPILGVCLGHQLLSLAYGGRVDRAPIPIHGQDHQIIHKDPW 162
                 5578899999999999999999999999887656677778************9988776544.334448*********************99999999999998865544 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 3e-06
   TIGR01368 316 nlnDgtveglehkelpvfsvQyHPeaspGphdteylFdefvelik 360
                    D+ v+ ++h++ p + vQ+HPe+  G ++   l ++fv+ ++
  MMETSP1061-20121228|2628_1 231 RSRDDVVQAIQHESNPHYGVQFHPES-IGTENGMALLENFVQVVE 274
                 45799********************6.6999999999***99987 PP

>> TIGR03494  salicyl_syn: salicylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0     1e-18   2.9e-16     252     415 ..     721     891 ..     708     899 .. 0.88

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 1e-18
   TIGR03494 252 eegpeeakklkeeLlsdskeivehvisvkeaieeleevcepgtvvvedlmtvreRGsvqhLgstvsgqLaedkdawdafevLfPaitasGiPkaaaieailrlee.tpReLYsGavllieadetldaaLvLRavy......qksektwlqaGaGiiaqstPeReleetcek 415
                 +++++e+ +    L+   k+ +e  + v    +++++vc+ g+v v++lm++     v  + st++g+L+++ + +d + + fP    +G Pk  ++e +  lee   R+ YsG++  ++ ++ +d  +++R++       +++ k  + aG  i a s+ e e+ e   k
  MMETSP1061-20121228|2628_1 721 DAESREDDRRARSLELSIKNRAENLMIVDLLRNDMSRVCKTGSVHVSKLMDIESFATVHQMVSTIRGTLSDSCNSIDLLRASFPGGSMTGAPKIRTMEILEDLEEnVDRGPYSGSLGYLSVNGCMDMNIMIRSATvtptetKDEWKVSIGAGGAITALSEAEDEYDEMLLK 891
                 55667777778889999999***********************************************************************************86258************************9853333224556777889999***********997666 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0025      0.72      69      85 ..     119     135 ..     106     140 .. 0.85
   2 !   16.8   0.0   3.4e-06   0.00099     129     197 ..     201     271 ..     195     272 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0025
   TIGR01855  69 kkkkpvlgiClGmQllf 85 
                 + + p+lg+ClG Qll 
  MMETSP1061-20121228|2628_1 119 NPDVPILGVCLGHQLLS 135
                 55789**********95 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 3.4e-06
   TIGR01855 129 llkgleeearvYfvHsYaveleeeeavlakadygekfvaavekdn..ivgvQFHPEkS.gktGlkllknfle 197
                 l++++++  rv   Hs  ++    e +  +a  + + v a++++    +gvQFHPE    ++G++ll+nf++
  MMETSP1061-20121228|2628_1 201 LFRDISSSFRVVRYHSLCAYDLP-ESLAVTARSRDDVVQAIQHESnpHYGVQFHPESIgTENGMALLENFVQ 271
                 56666666666666777776665.5677777778888888876542379*******861579********97 PP

>> TIGR00337  PyrG: CTP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   6.2e-05     0.018     338     392 ..      85     140 ..      44     146 .. 0.74
   2 ?    2.2   0.0      0.04        12     477     524 ..     226     270 ..     221     272 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.2e-05
   TIGR00337 338 e.aelleevdgilvPGGfGerGveGkilaikyarenkiPflGiclGlqvaviefar 392
                 + + +  ++dgi++  G G+   +  +     + + ++P+lG+clG q+  + +  
  MMETSP1061-20121228|2628_1  85 DlSSFFGKFDGIVLSPGPGTPQEQPPLSHLAISENPDVPILGVCLGHQLLSLAYGG 140
                 23456667*****************************************9998865 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.04
   TIGR00337 477 livsgksedgklveiielkdhpffvatqfhPefksrveepsklflglv 524
                 l v+++s d  +v+ i+ + +p++ ++qfhPe   + e++  l+ ++v
  MMETSP1061-20121228|2628_1 226 LAVTARSRD-DVVQAIQHESNPHY-GVQFHPESIGT-ENGMALLENFV 270
                 677787777.789999******98.9******8765.44555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (929 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.72u 0.22s 00:00:00.94 Elapsed: 00:00:00.79
# Mc/sec: 1552.12
//
Query:       MMETSP1061-20121228|2637_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1061-20121228|2639_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    5.2  21.5       0.24    7.6   5.7    2.1  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   3.7   0.00092       3.8     276     384 ..       8     109 ..       3     137 .. 0.45
   2 ?    7.6   5.7   5.8e-05      0.24     320     376 ..     283     334 ..     256     381 .. 0.52

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.00092
   TIGR02442 276 vlaraaralAAldgrrevteedvreaaeLvlkhRrrrkpfeeeqekeekkleekkeeak...pdeekedes...eekekeeskkqeeeepgkddekeedekeeaeeeaesaeeva 384
                 ++a  ++a  A++  ++++  d ++ + L  +  +  ++  ++ ++++ + ++++++++   ++++k +++                e p + + ++e e++e  + +e+++e++
  MMETSP1061-20121228|2639_1   8 TTAAKSNATTAMNTMDTMNTMDTMNTIGLSSTTTMSTNTNTNT-NNDNTNDNTNDTNDNdntNNKDKDNNGipsF------------ECPSHFELQQETEQRESAQYSETSKEMT 109
                 5566677888888888888888888888876666665555444.2222222222222220002222222222220............2222222222222222222222222221 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 5.8e-05
   TIGR02442 320 ekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeee 376
                 ++++k++++ k +++++ +k++++     +++k++++++++++d++++++k++++++
  MMETSP1061-20121228|2639_1 283 KRQNKDKDKDKDKETKNMNKTKNK-----NKNKTKNKNKDKNKDKHHRNNKNKNKNK 334
                 111111111111111111111111.....1111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       509  (0.124086); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.66
# Mc/sec: 901.93
//
Query:       MMETSP1061-20121228|2642_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.25
# Mc/sec: 158.39
//
Query:       MMETSP1061-20121228|2641_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1919.50
//
Query:       MMETSP1061-20121228|2648_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.44
# Mc/sec: 266.98
//
Query:       MMETSP1061-20121228|2647_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 664.20
//
Query:       MMETSP1061-20121228|2646_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    8.4   1.0       0.14    8.2   0.7    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        0.2    8.6  44.7       0.35    7.9  31.0    1.3  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.7   6.8e-05      0.14     156     274 ..      59     179 ..       5     423 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 6.8e-05
   TIGR00934 156 lereledrtetkvrtr.tq.vslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresr.didpedlyrsimmlqekheata 274
                  +++ +  +++  ++r  +  s   +s++ + +  + f+G+   r    s+ ++ +++dv++  +++ + +++   ++k k k +r + +k++ ++ ++ + +++   ++ ++   + eata
  MMETSP1061-20121228|2646_1  59 STTNTNT-NTNAMASRfANrESCRDNSRRVRCTLGQPFRGSEAVRGLPLSAAASSDNDDVPAAKAKKRKTKAKAKAKTKAKAKAKRKTKAKTKAKSTAKtKATAKTKAKPAAEEVPQPEATA 179
                 1111111.112223332112444444555555555555555555555555555555555555555555555444444444444444444444333333202333333344444444444444 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9  31.0   0.00017      0.35     157     244 ..     120     200 ..     106     211 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00017
   TIGR02794 157 AakkaEeeakakaaaeakkkaEaeeakkkaeaeak.KakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeaeakakakaeaerkaa.k 244
                 A+   ++++k ka+a+ak ka    ak+k++ +ak Kak  a+ Ka   +ak Ka+ +A++  + eA a a a+a a a+a a++ aa k
  MMETSP1061-20121228|2646_1 120 AK---AKKRKTKAKAKAKTKAK---AKAKRKTKAKtKAKSTAKTKA---TAKTKAKPAAEEVPQPEATATAPAAAVAVAAAPAKASAAiK 200
                 22...22333444444444442...345555555558888888888...66777777777777777777777777777777777766333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       367  (0.0894686); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.18s 00:00:00.57 Elapsed: 00:00:00.47
# Mc/sec: 1752.37
//
Query:       MMETSP1061-20121228|2651_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.22s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 2155.82
//
Query:       MMETSP1061-20121228|2649_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.9e-163  541.2   0.1     1e-162  540.8   0.0    1.1  1  TIGR01429 AMP_deaminase: AMP deaminase
    4.7e-17   59.8   0.0    8.1e-17   59.1   0.0    1.3  1  TIGR01430 aden_deam: adenosine deaminase


Domain annotation for each model (and alignments):
>> TIGR01429  AMP_deaminase: AMP deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  540.8   0.0  5.1e-166    1e-162      73     607 ..     128     666 ..      90     670 .. 0.93

  Alignments for each domain:
  == domain 1    score: 540.8 bits;  conditional E-value: 5.1e-166
   TIGR01429  73 evekeyelrm.hrGvlevyendtaleaqkksfsvpvtlkeylkdlekllalisdGpaksfsfrrlqyleskfnlhvllnelkelkeqkkvphrdfynvrkvdthvhaaasmnqkhllrfikkklkkepdevvierdgkkltlkevfdslkldaydlsvdtldvhadrntfhrfdkfnlkynpvGesrlreiflktdnyikGkylaelvkevltdledskyqla..eyrlsiyGrskeewdklakwiidn........dlfspnvrwliqvprlydvyrek..klvktfedllenvfeplfevtkdpsshpklhlflqqvvGidsvddeskhedkkfsekfpvpkewtseenppysyylyylyanllalnafrrerGlntfvlrphcGeaGevdhlvsafllaeginhGillrkvpvlqylyyltqigiamsplsnnslfleydknplreylkkGlnvslstddplqfhytkealleeyaiaaqvwklsavdlcelarnsvlqsGfedkvkekwlGvdykeegvegndikktnvadirlafraetlvee 607
                   +k+++++m ++Gv+e+y+ +  +++q+k + vp +++e+ +d  +++ ++ +G ++sf+f+rlq+l s f+ h+ +n + e +eq +    df+   k+d h+haa +   k ++ f+ +kl++e+d+ vi  dgk  tl +vf++  ld ++l++d+++v ad   + rfd fn+ky p   + +r iflk++n+i+G+y+ael+k vl+  e+sk  ++  e rlsiyG +++ewd+la+w++++         l s   rw+iq+prl+ +yr k  k  + f+d+len+f p+fe+t  p+++pkl   l+++vGidsvdde  +e          p+ewts enp y + ly+l+anl +ln++rr+rGlnt+++rph+Ge+G+   l+++++l+e+i+hGi+l++   lqylyyl+q+g+++splsnn lf + +  p+ +++++Glnv+lstddpl fh + ++lleey++a   + ls +d+ e+arnsvlqsGfe++ kek+lG++y+ +gv   + + t v+ ir  frae l  e
  MMETSP1061-20121228|2649_1 128 MENKNLTFEMgEDGVMEIYHAED-VDKQNKLSVVP-SVEEFEQDYRRMTEMVNEGFMRSFCFQRLQLLSSAFRTHTTMNASMEAHEQGNLLGTDFFRTLKIDNHIHAAGAPTAKQFVNFVANKLETESDT-VISSDGK--TLGQVFQEAGLDKDHLTIDAFNVLADYSVYQRFDNFNAKYSPFRMADMRRIFLKSNNHIGGRYFAELLKVVLNRHETSKGHVSglELRLSIYGMEPNEWDDLAEWMLKDwkggdfpgPLVSESNRWMIQIPRLWRIYRMKpgKDGSGFNDMLENIFIPMFEATLFPEKKPKLAEALKHIVGIDSVDDEGAPE---AACGCSRPHEWTSPENPAYWWQLYFLWANLEVLNSLRRARGLNTIAFRPHAGETGNPLNLACTYMLSESIAHGINLHQQVSLQYLYYLDQVGLSISPLSNNFLFRKISSSPFVKFFRRGLNVTLSTDDPLLFHMSDDPLLEEYSVARATFDLSMTDMMEIARNSVLQSGFEEEFKEKYLGKEYR-KGVTFCEERLTHVPLIRAKFRAEHLALE 666
                 3466778888899******9885.66666665555.9*****************************************************************************************9985.7899999..789****************************************************************************99876699********************864444333358999****************983345678*********************************************...56677889*******************************************************************************************************************************************************************************9.89999999***************99765 PP

>> TIGR01430  aden_deam: adenosine deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   3.9e-20   8.1e-17     185     320 ..     499     633 ..     486     635 .. 0.88

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 3.9e-20
   TIGR01430 185 lkltvHagelggaesvkealddlkaeRigHGvraledpellkrlaeekitlevCplSnlklgvvkslaehplkrlleagvkvtlnsDdpavfgs...tlkeeYeiaakdaalteeelkqlaknalegaflsddekkell 320
                 +    Hage g +   + a   +  e i HG+++ ++ +l  +   +++ l + plSn  l    + +  p+ +++ +g++vtl +Ddp++f++    l eeY++a+  + l+ +++ ++a+n++  +  +++ k+++l
  MMETSP1061-20121228|2649_1 499 IAFRPHAGETGNP--LNLACTYMLSESIAHGINLHQQVSLQYLYYLDQVGLSISPLSNNFLF--RKISSSPFVKFFRRGLNVTLSTDDPLLFHMsddPLLEEYSVARATFDLSMTDMMEIARNSVLQSGFEEEFKEKYL 633
                 56678****9655..344666777899*******************************9986..9***************************995556*******************************9*99999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 1855.61
//
Query:       MMETSP1061-20121228|2657_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.6   0.0       0.57    7.1   0.0    3.1  3  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase


Domain annotation for each model (and alignments):
>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.1   4.2e+02      23      53 ..      21      47 ..      12      65 .. 0.80
   2 ?    0.3   0.0     0.017        69     216     243 ..     118     145 ..      99     152 .. 0.85
   3 ?    7.1   0.0   0.00014      0.57     277     305 ..     229     257 ..     170     259 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.1
   TIGR01249 23 GnPdGkPvvflhGGPGsGtdeecrkffdpev 53
                  P+G+Pv     G GsG d++     dpe+
  MMETSP1061-20121228|2657_1 21 ETPQGEPV----AGSGSGNDDDENAPGDPET 47
                57899998....5999999998877777776 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.017
   TIGR01249 216 lslalarlenhyfvnkgflesenalldn 243
                 ++ a a l + y vn+ +  +++ l+++
  MMETSP1061-20121228|2657_1 118 YVPAQAMLTCFYSVNNRYAMGHRDLIRD 145
                 5667899***********9999988876 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.00014
   TIGR01249 277 eaelkvvqdaGhsasdpnlvaalvvalek 305
                  +el++  ++Ghs +dp++  +lv+a+++
  MMETSP1061-20121228|2657_1 229 TMELRIPLHSGHSMYDPGIQHELVQATDR 257
                 478999999****************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1233.42
//
Query:       MMETSP1061-20121228|2652_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-16   55.4   0.1    8.9e-16   55.2   0.1    1.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    5.2e-09   33.1   0.1    5.8e-09   33.0   0.0    1.0  1  TIGR00485 EF-Tu: translation elongation factor Tu
    4.2e-07   27.2   0.0    4.8e-07   27.0   0.0    1.0  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
     0.0001   19.0   0.0    0.00013   18.7   0.0    1.0  1  TIGR00475 selB: selenocysteine-specific translation elongation factor


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.1   8.7e-19   8.9e-16     246     338 ..       5     100 ..       2     101 .] 0.91

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 8.7e-19
   TIGR00483 246 vgrvetgvlkkgekvvfepagvsg.evksiemhheqieqaepgdnigfnvrgvskkd.irrgdvagdadn.ppkvakeftaqivvlqhpgaitvgy 338
                  g ve g l++g++v f p+ + g ++ sie h++ ++ a pg+ +g+ ++g++k++ +  gd+  + ++   k +k+fta + v +hpg++  gy
  MMETSP1061-20121228|2652_1   5 CGTVEQGTLRPGDQVGFVPSNLKGkKIFSIEQHKKVLDSAGPGNSVGLSIKGIAKDEkVSAGDIIYNEKDgELKPIKSFTALVAVQEHPGVLKPGY 100
                 699******************9983589**************************9764899**99877765899*******************999 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   5.6e-12   5.8e-09     227     311 ..       3      89 ..       1      97 [. 0.86

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 5.6e-12
   TIGR00485 227 vvtgrvergevkvgeeveivglketkkttvtgvemfkklldeakagdnvgvllrgvkkee.iergqvla..kpgsikphkkfeaevyv 311
                 ++ g ve+g+++ g++v  v  + +    +  +e  kk+ld+a  g+ vg+ ++g+ k+e +  g ++   k g +kp k f a v v
  MMETSP1061-20121228|2652_1   3 IICGTVEQGTLRPGDQVGFVPSNLKG-KKIFSIEQHKKVLDSAGPGNSVGLSIKGIAKDEkVSAGDIIYneKDGELKPIKSFTALVAV 89 
                 689****************9876554.45778************************9865499***99644899*********99977 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   4.7e-10   4.8e-07     236     324 ..       5      99 ..       3     101 .] 0.82

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 4.7e-10
   TIGR02034 236 aGtiasGsvkvGdevvvlpsgre.srvarivtfdgelekaeaGeavtlvle...deidisrGdllaa.adeapevadqfaaelvwladea..llpG 324
                  Gt+  G++++Gd+v  +ps+ +  ++ +i + ++ l++a  G++v l ++   ++  +s Gd++ + +d +++  ++f+a lv++++++  l+pG
  MMETSP1061-20121228|2652_1   5 CGTVEQGTLRPGDQVGFVPSNLKgKKIFSIEQHKKVLDSAGPGNSVGLSIKgiaKDEKVSAGDIIYNeKDGELKPIKSFTA-LVAVQEHPgvLKPG 99 
                 69******************97725799********************9753336779******98725788999999976.67777764336666 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   1.2e-07   0.00013     193     279 ..       3      91 ..       2      95 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.2e-07
   TIGR00475 193 vvtGtafsGevkvgDelvlepinkk.vrvkalqaqnqsvekavAGqRialnla.dvdkeklkRGllilkpeepkkrvvvklkaevklke 279
                 ++ Gt+ +G+ + gD++   p n k  ++ +++ +++  + a  G+ ++l ++  +  ek+  G +i + ++ + + +  + a v ++e
  MMETSP1061-20121228|2652_1   3 IICGTVEQGTLRPGDQVGFVPSNLKgKKIFSIEQHKKVLDSAGPGNSVGLSIKgIAKDEKVSAGDIIYNEKDGELKPIKSFTALVAVQE 91 
                 689******************9966378*************************4456689****8899999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 512.73
//
Query:       MMETSP1061-20121228|2664_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.09s 00:00:00.21 Elapsed: 00:00:00.23
# Mc/sec: 866.54
//
Query:       MMETSP1061-20121228|2662_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-25   86.1   0.8    4.3e-16   57.5   0.2    2.2  2  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
    1.2e-19   68.8   0.5    8.3e-13   46.5   0.1    2.2  2  TIGR01990 bPGM: beta-phosphoglucomutase
    1.9e-14   52.0   0.1    1.5e-11   42.5   0.1    2.9  2  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
    1.7e-13   48.4   0.1    3.4e-13   47.4   0.1    1.4  1  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
    3.1e-09   34.3   0.2    6.3e-09   33.3   0.2    1.4  1  TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase
    1.2e-07   29.4   0.5    3.5e-06   24.6   0.2    2.3  2  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
    3.1e-07   28.2   0.1    5.8e-06   24.1   0.0    2.2  2  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    1.9e-06   25.9   0.4    3.3e-06   25.1   0.3    1.4  1  TIGR03351 PhnX-like: phosphonatase-like hydrolase
    5.6e-05   20.8   0.1    0.00021   19.0   0.0    1.9  2  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
    9.2e-05   19.8   0.0      0.039   11.3   0.0    2.2  2  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
    0.00015   19.4   0.0      0.017   12.7   0.0    2.2  2  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
    0.00023   19.5   0.1      0.018   13.3   0.0    2.4  2  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
    0.00027   18.4   0.4      0.022   12.1   0.2    2.3  2  TIGR01548 HAD-SF-IA-hyp1: HAD hydrolase, TIGR01548 family
    0.00036   18.4   0.1      0.017   13.0   0.0    2.2  2  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
     0.0023   15.9   0.1      0.057   11.4   0.0    2.3  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
     0.0069   14.0   0.0       0.28    8.7   0.0    2.2  2  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
  ------ inclusion threshold ------
      0.011   13.4   0.1       0.41    8.4   0.1    2.3  2  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain


Domain annotation for each model (and alignments):
>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   6.9e-09   1.7e-06       3      33 ..      72     102 ..      71     130 .. 0.87
   2 !   57.5   0.2   1.8e-18   4.3e-16      66     184 ..     203     327 ..     177     329 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 6.9e-09
   TIGR02009   3 aviFDlDGvlvdtaslHakAwkaladklgle 33 
                 a++FD DGv+++t +lH +A++++++++g++
  MMETSP1061-20121228|2662_1  72 ALLFDCDGVILETEELHRQAYNKVFNEFGVT 102
                 89**************************987 PP

  == domain 2    score: 57.5 bits;  conditional E-value: 1.8e-18
   TIGR02009  66 ekieqlaerknelyrellrltgaevlpgienlle.elkkkkiavalgsss..knakaiLakl...gltdlfdavvdasevkegKPaPetFLaaaekLgv.kpeecvvfEDaeaGveaaraagmfav 184
                   i++l  rk++ly++ ++++ a + pg+  l++ +l+   iav++ s+s  + a+++L+ +   +  +++d+++ +++v e KP P ++ aa  kLg+ k+++cvv+ED+++G++aa+aagm+++
  MMETSP1061-20121228|2662_1 203 SLIDALQDRKTDLYKQTVEEN-AIARPGLLDLMDsALADPTIAVGVCSAStkAAAQKVLECTlgpDRVNALDVCILGDDVSEKKPSPMIYNAARDKLGIaKATNCVVVEDSSVGLAAAKAAGMRCI 327
                 457899*************99.7777888777651677889****999985567899**9653223456799**************************63799*********************98 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.3e-07   8.1e-05       3      33 ..      72     102 ..      71     159 .. 0.82
   2 !   46.5   0.1   3.5e-15   8.3e-13      63     184 ..     201     327 ..     172     329 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3.3e-07
   TIGR01990   3 aviFDlDGvitdtaeyhylawkkladelgie 33 
                 a++FD DGvi +t e+h +a++k+ +e g++
  MMETSP1061-20121228|2662_1  72 ALLFDCDGVILETEELHRQAYNKVFNEFGVT 102
                 789*************************997 PP

  == domain 2    score: 46.5 bits;  conditional E-value: 3.5e-15
   TIGR01990  63 seeekeelaerknekYvellkeltpedvlpgikellee.lkkkkikialasaskn..aklvlek.l..elkdkfdaivdaaevkkgkPdPeiFlaaaeklgv.speecigieDaeaGieaikaagilav 184
                  e+ + +l +rk + Y++ ++e   +   pg+ +l++  l +  i +++ sas+   a++vle  l  +  +++d+++ +++v++ kP P i+ aa +klg+ ++ +c+++eD+++G+ a+kaag+  +
  MMETSP1061-20121228|2662_1 201 LESLIDALQDRKTDLYKQTVEEN--AIARPGLLDLMDSaLADPTIAVGVCSASTKaaAQKVLECtLgpDRVNALDVCILGDDVSEKKPSPMIYNAARDKLGIaKATNCVVVEDSSVGLAAAKAAGMRCI 327
                 455678999*********99974..5567*******86367889********9862257899852432356889***************************945789*******************876 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0087       2.1       1      16 [.      72      87 ..      72     136 .. 0.81
   2 !   42.5   0.1   6.3e-14   1.5e-11      97     153 ..     269     328 ..     199     329 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0087
   TIGR01509  1 ailFDlDgvLvdtekg 16
                a+lFD+Dgv+++te  
  MMETSP1061-20121228|2662_1 72 ALLFDCDGVILETEEL 87
                68**********9865 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 6.3e-14
   TIGR01509  97 edkfdkvid..dvgsgKPdpdiylqalkklglk.peeclfvdDsaagieaakaaGmktvl 153
                 +++ d++i   dv  +KP p+iy++a  klg++ +++c++v+Ds +g++aakaaGm++++
  MMETSP1061-20121228|2662_1 269 VNALDVCILgdDVSEKKPSPMIYNAARDKLGIAkATNCVVVEDSSVGLAAAKAAGMRCII 328
                 456677777768999******************************************996 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.1   1.4e-15   3.4e-13      65     184 ..     205     329 ..     172     350 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 1.4e-15
   TIGR01449  65 vaelrklFlrhYeevaeeltsvfpgveaale.aLrakGlrlglvtnkPealarplLell...glakylevligGdslaqrkPdPePLllaaerlgve.paqmvyvGDsevDiaaArAAGlpsvll 184
                 +  l+ + +  Y+++ ee +   pg  + ++ aL    + +g++    +a+a+++Le +   +  + l+v i Gd+++++kP P    +a ++lg++ ++++v v Ds v +aaA+AAG++ ++ 
  MMETSP1061-20121228|2662_1 205 IDALQDRKTDLYKQTVEENAIARPGLLDLMDsALADPTIAVGVCSASTKAAAQKVLECTlgpDRVNALDVCILGDDVSEKKPSPMIYNAARDKLGIAkATNCVVVEDSSVGLAAAKAAGMRCIIT 329
                 5667778888899999999999999988886478888999*****************87556788999***************************972578*******************97654 PP

>> TIGR01422  phosphonatase: phosphonoacetaldehyde hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.2   2.6e-11   6.3e-09      78     198 ..     204     327 ..     194     338 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 2.6e-11
   TIGR01422  78 dveelyeafepllleklaeyaelipgvlevva.klrargikigsttGYtrevldvvlkaA..aaqGyrpdlvvaaddvpagRPaPamilknvielgvedvaavvKvdDtvpdieeGrnAgvwtv 198
                  +++l ++ ++l  ++++e a   pg+l++++ +l +  i +g ++  t++  ++vl+     ++  + d+++  ddv++ +P P++ +++  +lg+++ +++v v+D+  +++  ++Ag+  +
  MMETSP1061-20121228|2662_1 204 LIDALQDRKTDLYKQTVEENAIARPGLLDLMDsALADPTIAVGVCSASTKAAAQKVLECTlgPDRVNALDVCILGDDVSEKKPSPMIYNAARDKLGIAKATNCVVVEDSSVGLAAAKAAGMRCI 327
                 5677888888899999*************997369999******************9876225778899***************************************************9765 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.087        21       1      26 [.      73      98 ..      73     114 .. 0.84
   2 !   24.6   0.2   1.5e-08   3.5e-06      99     190 ..     250     345 ..     227     356 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.087
   TIGR01454  1 vvfdldgvlvdsfavmreafaiayae 26
                ++fd dgv++++  + r+a++  ++e
  MMETSP1061-20121228|2662_1 73 LLFDCDGVILETEELHRQAYNKVFNE 98
                58*****************9988776 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 1.5e-08
   TIGR01454  99 gksgprarslle.alg..llelldevigsdevarpkpapdivrealdlldva.aeaavmvgdalidlasaraagvaavaalwgetdeaellaarpd 190
                   + + a+ +le +lg   ++ ld  i  d+v++ kp+p i   a d+l++a a ++v+v d+ + la+a+aag+ ++ +    t+  ++  ++ d
  MMETSP1061-20121228|2662_1 250 ASTKAAAQKVLEcTLGpdRVNALDVCILGDDVSEKKPSPMIYNAARDKLGIAkATNCVVVEDSSVGLAAAKAAGMRCIITYTESTSTEDFYGKGAD 345
                 44445566666635663346789999************************97367899*****************988765555554455555555 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0       0.2        48       4      29 ..      72      97 ..      71     125 .. 0.85
   2 !   24.1   0.0   2.4e-08   5.8e-06     137     204 ..     272     338 ..     242     353 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.2
   TIGR02253  4 avfFDlddTLidtsklaekalrevve 29
                a++FD d+ +++t++l  +a ++v +
  MMETSP1061-20121228|2662_1 72 ALLFDCDGVILETEELHRQAYNKVFN 97
                79****************99999876 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 2.4e-08
   TIGR02253 137 FdavivseelgveKPhpkiFkaalkrlgv.kpeeavmvGDrlekDikGaknlglktvwinrgkskkeed 204
                  d  i ++++ ++KP p i+ aa ++lg+ k+ ++v v D+ +     ak++g+  + +  +  +  ed
  MMETSP1061-20121228|2662_1 272 LDVCILGDDVSEKKPSPMIYNAARDKLGIaKATNCVVVEDSSV-GLAAAKAAGMRCIITYTESTST-ED 338
                 578899**********************96899*******976.699********97655444444.43 PP

>> TIGR03351  PhnX-like: phosphonatase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.3   1.4e-08   3.3e-06      65     197 ..     204     337 ..     149     354 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.4e-08
   TIGR03351  65 kvqaifaeFeerlaelyddaevvalpGveeair.dLrskGikvaLttGfdrevaeklle.klgWsvgedvDavvtssdvaagRPaPdliyralertgvqdvrsvlvaGDtanDleaginagatlvvGvltGasda 197
                  + a + +   ++++ ++++   a pG  +++  +L +  i v++     ++ a+k+le +lg + ++ +D+ + ++dv   +P P +  +a  + g+ ++ + +v+ D+   l+a+++ag+++++  +   s++
  MMETSP1061-20121228|2662_1 204 LIDALQDRKTDLYKQTVEENA-IARPGLLDLMDsALADPTIAVGVCSASTKAAAQKVLEcTLGPDRVNALDVCILGDDVSEKKPSPMIYNAARDKLGIAKATNCVVVEDSSVGLAAAKAAGMRCIITYTESTSTE 337
                 455556666677888887765.578*****996269999*******************9579************************7777888999**************************9997666555555 PP

>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.2   2.8e+02       3      51 ..      73     121 ..      72     159 .. 0.72
   2 !   19.0   0.0   8.7e-07   0.00021     135     182 ..     283     328 ..     199     329 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.2
   TIGR01993   3 llFDlDntLypssagifklikrniteflaeklklseeeaeklrkdyyke 51 
                 llFD D  + +++    ++ ++  +ef ++k+  ++ ea +  ++yy  
  MMETSP1061-20121228|2662_1  73 LLFDCDGVILETEELHRQAYNKVFNEFGVTKVCGDTREAVEWSVSYYDI 121
                 5788888877777766777777778887777777888888888888765 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 8.7e-07
   TIGR01993 135 lelilKPspeayekalreag.vdpekaifldDsarNiaaakalglktvl 182
                      KPsp  y++a ++ g ++++++++++Ds   +aaaka g++ ++
  MMETSP1061-20121228|2662_1 283 E---KKPSPMIYNAARDKLGiAKATNCVVVEDSSVGLAAAKAAGMRCII 328
                 3...5***************8999*********************9876 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0054       1.3       3      32 ..      72     101 ..      70     116 .. 0.90
   2 !   11.3   0.0   0.00016     0.039      75     201 ..     201     334 ..     185     344 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0054
   TIGR02254   3 tllfDlDdtlldfeaaeksalkllfedkgi 32 
                  llfD D+ +l++e+ + +a +++f++ g+
  MMETSP1061-20121228|2662_1  72 ALLFDCDGVILETEELHRQAYNKVFNEFGV 101
                 59***********************98766 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00016
   TIGR02254  75 lnteaDe..lklnkefleileekarllpgAlellea.Lkkk.lrlyivtnGvrevqekrl.rksgla..pffdrvlvsEdaGiekPdkkiFafaleriklkkeevlmvGDsleaDikGaanaGldtvwlnpdrk 201
                 l+   D    +    +++ +ee+a   pg l+l++  L    + +++ +   +   +k l   +g +  + +d  ++ +d+  +kP + i++ a +++ + k    +v ++ +  +  a+ aG+  +   ++  
  MMETSP1061-20121228|2662_1 201 LESLIDAlqDRKTDLYKQTVEENAIARPGLLDLMDSaLADPtIAVGVCSASTKAAAQKVLeCTLGPDrvNALDVCILGDDVSEKKPSPMIYNAARDKLGIAKATNCVVVEDSSVGLAAAKAAGMRCIITYTEST 334
                 444444421233445899999999999999999975155445777777777665443333034444411468999***********************65555555555556789999*****98877655554 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0      0.02       4.9       3      33 ..      73     103 ..      71     136 .. 0.86
   2 !   12.7   0.0   7.2e-05     0.017     145     202 ..     270     327 ..     228     328 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.02
   TIGR02252   3 itlDvvdTLlalkksvgevYseiaekyGvev 33 
                 +++D  + +l++++   ++Y+++ +++Gv++
  MMETSP1061-20121228|2662_1  73 LLFDCDGVILETEELHRQAYNKVFNEFGVTK 103
                 89***************************85 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 7.2e-05
   TIGR02252 145 elfdfvvvSaevgaeKPdpkIFekaleklgik.peevlhiGDslekDvegakaaGlral 202
                 + +d++++  +v  +KP+p I++ a +klgi+ + +++ +  +    + +akaaG+r +
  MMETSP1061-20121228|2662_1 270 NALDVCILGDDVSEKKPSPMIYNAARDKLGIAkATNCVVVE-DSSVGLAAAKAAGMRCI 327
                 568999999*********************65155666665.55778********9975 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.059        14       1      29 [.      72     101 ..      72     114 .. 0.83
   2 !   13.3   0.0   7.6e-05     0.018      96     149 .]     268     323 ..     213     323 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.059
   TIGR01549   1 ailfDidGTLvds.eakeealeqtleefsa 29 
                 a+lfD+dG+++ + e+ ++a+++ ++ef++
  MMETSP1061-20121228|2662_1  72 ALLFDCDGVILETeELHRQAYNKVFNEFGV 101
                 589******998725778899999998875 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 7.6e-05
   TIGR01549  96 kledyfelilvsdepgsKpepeiflaaleslgle..pevlhvGDnlsDieaaknag 149
                 + + ++  il++d   +Kp+p+i++aa ++lg+   +++++v D+   ++aak+ag
  MMETSP1061-20121228|2662_1 268 RVNALDVCILGDDVSEKKPSPMIYNAARDKLGIAkaTNCVVVEDSSVGLAAAKAAG 323
                 5677788899999778***************9852268999999999999999887 PP

>> TIGR01548  HAD-SF-IA-hyp1: HAD hydrolase, TIGR01548 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.024       5.9       2      29 ..      72      99 ..      71     113 .. 0.83
   2 !   12.1   0.2   9.2e-05     0.022     104     195 ..     220     320 ..     148     322 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.024
   TIGR01548  2 avvlDvDGvlvdvsesYrraivdtvehv 29
                a+++D DGv+ +  e +r+a     + +
  MMETSP1061-20121228|2662_1 72 ALLFDCDGVILETEELHRQAYNKVFNEF 99
                789****************987666555 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 9.2e-05
   TIGR01548 104 ededlLlakelld....aLtradiavavltGrpsdeadvvLdrv.Gldilg..evrialdDaaa.kPnPraliaaaerlgadah.savfvGDtvdDiltar 195
                  +e+ +  ++lld    aL    iav+v +  +++ a++vL+   G d +   +v i  dD+++ kP+P    aa ++lg+    + v+v D    +++a+
  MMETSP1061-20121228|2662_1 220 VEENAIARPGLLDlmdsALADPTIAVGVCSASTKAAAQKVLECTlGPDRVNalDVCILGDDVSEkKPSPMIYNAARDKLGIAKAtNCVVVEDSSVGLAAAK 320
                 4444444454444111145556799****************9652666544116777789999999***9999999***9765548999999876666665 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.081        20      24      74 ..      53     102 ..      42     118 .. 0.79
   2 !   13.0   0.0   7.1e-05     0.017     134     188 ..     272     327 ..     248     332 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.081
   TIGR01428  24 ellgekeelsqlwrqkqleysrlrtlmgaykdfdeltaealkalleelgle 74 
                 ++  + ee+s+   +k  +y  l+  +g   +++el+++a++ +++e+g+ 
  MMETSP1061-20121228|2662_1  53 AASSA-EEVSTDNAAKSYDYALLFDCDGVILETEELHRQAYNKVFNEFGVT 102
                 33333.6999999999999999999999999***************99997 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 7.1e-05
   TIGR01428 134 fdallsadavraYKPapkvYelalealgvkpeevllvasna.wDlkgAkklGlktv 188
                 +d ++  d+v + KP+p +Y+ a ++lg+ ++  ++v +     l++Ak++G++ +
  MMETSP1061-20121228|2662_1 272 LDVCILGDDVSEKKPSPMIYNAARDKLGIAKATNCVVVEDSsVGLAAAKAAGMRCI 327
                 5677888999*******************98776666554449**********965 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.16        39       2      34 ..      72      99 ..      71     108 .. 0.65
   2 !   11.4   0.0   0.00023     0.057      88     136 ..     280     327 ..     242     332 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.16
   TIGR01662  2 lvvlDlDgtLiddvdyvteedeaelypevidal 34
                ++++D Dg++      +tee  ++ y +v +++
  MMETSP1061-20121228|2662_1 72 ALLFDCDGVIL-----ETEELHRQAYNKVFNEF 99
                589********.....44444555555555544 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00023
   TIGR01662  88 kceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGlatv 136
                 + + +Kp++  ++ a ++l  ++a+++vvv D + + l aak++G++++
  MMETSP1061-20121228|2662_1 280 DVSEKKPSPMIYNAARDKLGIAKATNCVVVED-SSVGLAAAKAAGMRCI 327
                 66789**************8889*********.99***********986 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.074        18       2      13 ..      74      85 ..      73      94 .. 0.85
   2 !    8.7   0.0    0.0012      0.28     197     243 ..     285     329 ..     278     331 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.074
   TIGR01460  2 lfDidGVlvrgk 13
                lfD+dGV+++ +
  MMETSP1061-20121228|2662_1 74 LFDCDGVILETE 85
                8*******9865 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0012
   TIGR01460 197 KPspalykaaeellkarakrrkvlmvGDnlrtDvlgAkeaGldslLv 243
                 KPsp++y+aa ++l+ +++   +++v D+ +  + +Ak+aG+  + +
  MMETSP1061-20121228|2662_1 285 KPSPMIYNAARDKLGIAKATN-CVVVEDSSVG-LAAAKAAGMRCIIT 329
                 9******************98.9999999776.99999999988765 PP

>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.099        24       2      16 ..      72      86 ..      71     114 .. 0.79
   2 ?    8.4   0.1    0.0017      0.41      98     143 ..     281     327 ..     238     334 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.099
   TIGR01656  2 alllDrDGvlnedsq 16
                all+D DGv+ e  +
  MMETSP1061-20121228|2662_1 72 ALLFDCDGVILETEE 86
                89********98776 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0017
   TIGR01656  98 cdcrKPkpglilealkrlg.vdasrslvvGDrldDvqaarkaGaaay 143
                  + +KP+p + + a  +lg + a + +vv D+   + aa++aG++ +
  MMETSP1061-20121228|2662_1 281 VSEKKPSPMIYNAARDKLGiAKATNCVVVEDSSVGLAAAKAAGMRCI 327
                 4557****999999999998899********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.82
# Mc/sec: 885.29
//
Query:       MMETSP1061-20121228|2661_1  [L=1424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.2e-138  460.5   0.2    3.2e-48  162.5   0.0    5.1  5  TIGR01073 pcrA: ATP-dependent DNA helicase PcrA
   3.5e-105  350.5   0.1    8.2e-40  134.5   0.0    4.1  4  TIGR01074 rep: ATP-dependent DNA helicase Rep
   2.3e-104  348.0   1.4    1.6e-35  120.3   0.1    5.7  6  TIGR01075 uvrD: DNA helicase II
      8e-43  144.3   3.6    4.8e-26   88.7   0.3    4.8  3  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit
    1.6e-41  140.2   0.8    1.8e-23   80.5   0.0    4.0  4  TIGR00609 recB: exodeoxyribonuclease V, beta subunit
      9e-35  118.1   9.5      7e-19   65.5   0.0    4.3  4  TIGR02784 addA_alphas: double-strand break repair helicase AddA
    0.00032   17.2   0.4       0.25    7.7   0.0    2.8  3  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
  ------ inclusion threshold ------
       0.16    7.6   1.0        1.5    4.5   0.0    2.6  3  TIGR01448 recD_rel: helicase, RecD/TraA family


Domain annotation for each model (and alignments):
>> TIGR01073  pcrA: ATP-dependent DNA helicase PcrA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.5   0.0   3.9e-26     2e-23      21      98 ..     206     324 ..     174     335 .. 0.87
   2 !  162.5   0.0   6.2e-51   3.2e-48     100     298 ..     372     577 ..     364     606 .. 0.86
   3 !   93.1   0.0     6e-30   3.1e-27     302     427 ..     615     742 ..     601     748 .. 0.92
   4 !  111.7   0.0   1.4e-35   7.2e-33     446     670 ..     791    1044 ..     786    1068 .. 0.76
   5 !    5.8   0.0    0.0015      0.75     643     695 ..    1181    1236 ..    1165    1259 .. 0.60

  Alignments for each domain:
  == domain 1    score: 80.5 bits;  conditional E-value: 3.9e-26
   TIGR01073  21 LilaGaGsGktrvLthriahllaekkvaPeniLaitftnkaakemkervekllge...........................................vaedlwistfhslcvriLrrdid 98 
                  ++aG GsGkt+vLt riahll+e      +iLa+tft kaa emker+e+ll e                                             e + ++tfhs+c++iLr++ +
  MMETSP1061-20121228|2661_1 206 RVIAGPGSGKTKVLTTRIAHLLREDPY--GRILAVTFTRKAAGEMKERLERLLREqhqektsrmggggrsssgdeeefvavaqtadgradaegavaldGIERVELGTFHSICAKILRYNGE 324
                 489********************9854..69***********************99***************************************99999******************987 PP

  == domain 2    score: 162.5 bits;  conditional E-value: 6.2e-51
   TIGR01073 100 iGlnknfsildesdqksllktivkdkdlDekk..fePksilgkisnaknellepedfakea....adylekvvaevyeeyqkkLlrnnalDfdDLilttieLfekvpdvleyyqrkfryilvDeyqDtnraqytlvrlLaersknlcvvGDaDqsiygfrgaditniLsfekD...ypdatvilLeqnyrstkniLqaaneviennse 298
                 i ln ++ i+d+ +q ++l++ +k++++D k+   +P +i+++i ++k+   + +d  ++     +    ++  +vy  y++kLl+nnalDfdDLil+t eL+ + ++  ++ +r++ ++lvDeyqDt r+q +l++lL++   +l+vvGDaDqsiy++rga++  + + + +   y+  ++++L +nyrst ni++aa++vi   + 
  MMETSP1061-20121228|2661_1 372 IRLNGQYVIIDQGEQIRILNECLKEQEIDLKHteVKPIQIITTIGKIKETFAKGQDPFANTpgrpPGRTMQMTRKVYFRYREKLLANNALDFDDLILLTRELLMEDEELRHRLHRRWPHVLVDEYQDTSRVQMDLIKLLTS--SSLFVVGDADQSIYSWRGAHVGSLEDVKTEfepYGTVQTVFLKENYRSTSNIVRAAEKVISSGQY 577
                 668999*******************99999872256778899*******9988877554441111445889999*****************************************************************87..58*******************9998877651126779***********************97654 PP

  == domain 3    score: 93.1 bits;  conditional E-value: 6e-30
   TIGR01073 302 kklwtenseGekitlyeadtekdearfviseikklrkeeelkagd.lailyrtnaqsrvleeallkanlpykivGGl.kfydrkeikDvlaylrvlanpdDdvsleriinvPkrgiGassleklrela 427
                 + ++ +++ G +  ++ +++e+ earfv++ i +l+ +++l+ gd +a++yrtnaqsr leea +++nlpy i GG   fy r eikD l++lr l n +D+ s+ r + +P +giGa+   ++r+++
  MMETSP1061-20121228|2661_1 615 RAMKPKRGAGPSPRVVACEDERSEARFVVDTILELKASNDLAPGDtVAMVYRTNAQSRYLEEACVQQNLPYVIRGGAgGFYKRAEIKDCLCFLRWLYNGNDEGSMIRAMKTPSKGIGAKGYGEFRDYC 742
                 567788899999999************************99988858*****************************846***************************************9999888875 PP

  == domain 4    score: 111.7 bits;  conditional E-value: 1.4e-35
   TIGR01073  446 slaaksaeklkefaelleelreqvellsvtevveevleksgylemLke..ekteeaesrlenldellsvvkefedes.........ed........kslvdfleklaLvadldeleeee...G.davtlmtlhaakGLefpvvflvGleegvfPharsle...dekeleeerrlayvgitraeeeLyltkaksrllfgr.......leanipsrfleeipdelletkstgereatsakaaslsrkkqasrktasqaka 670 
                   +++++ +++++f  ++ e+r +   ++v +++  v+e+ + l+++++  +++ e  +r en++el ++++++             +d        ++l  fl+++aLv+d+ e +ee+      +v lmt+ha+kG ef+ vf+vGleeg++P + +++   +  +leee+rl+yv++tra+ +L+lt  k  + f +       +++++ srfl+ i ++    k  +    ++ k a++++++  +++++s++++
  MMETSP1061-20121228|2661_1  791 HISKRALNNFLKFSAQMGEIRANAYRADVGTLLLFVIEELKLLDHFDAisKSKSEFLERKENVKELRNAANKYASYGpsltrgpsdNDngdvmgvdSALSSFLDDVALVSDTAEANEEDkdpSrMVVNLMTIHASKGTEFDCVFVVGLEEGTLPCSPAIQegpGSVQLEEEKRLCYVAMTRAKTRLVLTWRKEVTSFSKwntegpkTNSKQRSRFLNAIVSKKSRAKDAK----RNPKGAQSKTRMALRNASTSTSRS 1044
                  5899****************************************99872245556679**************987655566677662245566665899**************99998545534789********************************97666899**********************98888887751112222456677999999988774444443....222222233333333333333322 PP

  == domain 5    score: 5.8 bits;  conditional E-value: 0.0015
   TIGR01073  643 ereatsakaaslsrkkqasrktasqak...aeaktlswavGdrvshkkfGvGtvvs 695 
                  +++++s++  + s++++ sr+++ ++      ++t  + vG rv h + G+Gtvv+
  MMETSP1061-20121228|2661_1 1181 SSSSSSSRPPPRSSSRSSSRSSSRSPPndiGVDPTWFFPVGVRVVHMNLGKGTVVE 1236
                  222223333344444444444443333343345667779***************97 PP

>> TIGR01074  rep: ATP-dependent DNA helicase Rep
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   4.3e-16   2.2e-13      19      76 ..     207     262 ..     195     265 .. 0.92
   2 !  134.5   0.0   1.6e-42   8.2e-40      98     293 ..     372     575 ..     369     600 .. 0.87
   3 !   74.1   0.0   3.1e-24   1.6e-21     306     423 ..     622     741 ..     613     758 .. 0.89
   4 !   89.1   0.0     9e-29   4.6e-26     440     639 ..     788    1015 ..     784    1039 .. 0.74

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 4.3e-16
   TIGR01074  19 vlaGaGsGktkvivnkiayliekcgykakkiaavtftnkaaremkervaktlkkkeak 76 
                 v+aG GsGktkv++ +ia+l++++ y   +i avtft kaa emker+ + l++++++
  MMETSP1061-20121228|2661_1 207 VIAGPGSGKTKVLTTRIAHLLREDPY--GRILAVTFTRKAAGEMKERLERLLREQHQE 262
                 99**********************99..69********************99987765 PP

  == domain 2    score: 134.5 bits;  conditional E-value: 1.6e-42
   TIGR01074  98 lglksnfslfdetdqlallkelle.keleedkdllk..klkstisnwkndlltPeqalasakn....ekekevakvyeryqaklraynaldfddlillPvlllkeneevrkkWqkkiryllvdeyqdtntsqyelvkllvgerarftvvGdddqsiysWrGakpenlvklkedf...Pqlkvikleqnyrstsrilkaaniliann 293
                 + l+ ++ ++d+ +q  +l+e l+ +e++ ++  +k  ++++ti++ k  +   ++ +a++ +    +  + + kvy ry +kl a naldfddlill  +ll e+ee+r++ +++  ++lvdeyqdt   q  l+kll++  +++ vvGd dqsiysWrGa+   l  +k +f    +++ + l  nyrsts i++aa ++i+  
  MMETSP1061-20121228|2661_1 372 IRLNGQYVIIDQGEQIRILNECLKeQEIDLKHTEVKpiQIITTIGKIKETFAKGQDPFANTPGrppgRTMQMTRKVYFRYREKLLANNALDFDDLILLTRELLMEDEELRHRLHRRWPHVLVDEYQDTSRVQMDLIKLLTS--SSLFVVGDADQSIYSWRGAHVGSLEDVKTEFepyGTVQTVFLKENYRSTSNIVRAAEKVISSG 575
                 67888999************9765156777777776447789**********99999888754112156677889****************************************************************97..5788***********************988632258999*********************865 PP

  == domain 3    score: 74.1 bits;  conditional E-value: 3.1e-24
   TIGR01074 306 geGeklkvieakneeheaerivaeiiaeklvd.ktqykdyailyrGnhqsrllekalqkkriPyklsggt.sffsraeikdllsylrllvnpdddaaflrivntPkreiGsatleklgey 423
                 g G   +v+++++e  ea  +v+ i++ k ++   +    a++yr n qsr le+a  ++++Py + gg+  f++raeikd l++lr l n +d+ +++r+++tP + iG      + +y
  MMETSP1061-20121228|2661_1 622 GAGPSPRVVACEDERSEARFVVDTILELKASNdLAPGDTVAMVYRTNAQSRYLEEACVQQNLPYVIRGGAgGFYKRAEIKDCLCFLRWLYNGNDEGSMIRAMKTPSKGIGAKGYGEFRDY 741
                 5677789*******************98887736677779**************************999736**************************************9877776666 PP

  == domain 4    score: 89.1 bits;  conditional E-value: 9e-29
   TIGR01074  440 llqklseraaeklkkftellkeirkkaerseavelvrslvedidyeewlretsesekaaelrlknveelvewlke......mleg....deedekm....tleqvvkkltlr.dllerkeeeeesdq..vqlmtlhaskGlefpyvflvGmeegilPhqssieed....nveeerrlayvGitrakkeltltlckerrqyGelvr.......pepsrfldelPqedlk 639 
                  +++++s+ra +++ kf   + eir++a r +  +l+  ++e++++ +++  +s+s+ +   r++nv+el ++ ++       l +    +++ + m    +l+  +  ++l  d  e +ee+++  +  v+lmt+haskG ef  vf+vG+eeg lP + +i+e+    ++eee+rl yv +trak  l+lt+ ke   + ++ +        + srfl+ + ++  +
  MMETSP1061-20121228|2661_1  788 AEDHISKRALNNFLKFSAQMGEIRANAYRADVGTLLLFVIEELKLLDHFDAISKSKSEFLERKENVKELRNAANKyasygpSLTRgpsdNDNGDVMgvdsALSSFLDDVALVsDTAEANEEDKDPSRmvVNLMTIHASKGTEFDCVFVVGLEEGTLPCSPAIQEGpgsvQLEEEKRLCYVAMTRAKTRLVLTWRKEVTSFSKWNTegpktnsKQRSRFLNAIVSKKSR 1015
                  57899****************************************************************99877622222224331211333444511113455566677762566666555544333389********************************985555689***********************999998775411111114568888877655444 PP

>> TIGR01075  uvrD: DNA helicase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   2.3e-16   1.2e-13       1      78 [.     174     261 ..     174     268 .. 0.77
   2 ?    0.2   0.0      0.07        36      81      95 ..     307     321 ..     294     329 .. 0.88
   3 !  120.3   0.1   3.2e-38   1.6e-35     100     294 ..     372     574 ..     368     579 .. 0.86
   4 !   80.5   0.0   3.7e-26   1.9e-23     307     422 ..     621     739 ..     602     752 .. 0.86
   5 !   89.3   0.0     8e-29   4.1e-26     443     631 ..     790    1009 ..     783    1047 .. 0.78
   6 ?    1.1   0.0     0.037        19     667     700 ..    1218    1253 ..    1190    1259 .. 0.70

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 2.3e-16
   TIGR01075   1 lldglndkqreavaaple......nll......vlaGaGsGktrvlvhriawllsveevseysimavtftnkaaaemrkrieellakskr 78 
                 ll +ln+ q eav+ pl         l      v+aG GsGkt+vl++ria ll+ +  +   i+avtft kaa+em++r+e+ll+++++
  MMETSP1061-20121228|2661_1 174 LLRDLNPSQVEAVTQPLRlphptsGELrsvvtrVIAGPGSGKTKVLTTRIAHLLRED--PYGRILAVTFTRKAAGEMKERLERLLREQHQ 261
                 67788999999998875322222211222223399******************9865..6778**********************98765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.07
   TIGR01075  81 wiGtfhglahrllra 95 
                  +Gtfh+++ ++lr 
  MMETSP1061-20121228|2661_1 307 ELGTFHSICAKILRY 321
                 58***********95 PP

  == domain 3    score: 120.3 bits;  conditional E-value: 3.2e-38
   TIGR01075 100 aklpedfqildsddqlrllkrllkalnld..eklfpprqaawyinaqkdeGlrpeh..ieaedd...pvertllkiyaeyqeacdraGlvdfaelllrayellrnkelllqhyrerfkeilvdefqdtnkiqyawlrllagetgkvlivGdddqsiygwrGakveniqkflkdfk...saetirleqnyrstanileaanalian 294
                 ++l  ++ i+d ++q+r+l   lk  ++d  ++ + p q++  i + k+   + ++   ++      ++++ ++k+y  y e+   +  +df +l+l + ell ++e l+++ ++r+ ++lvde+qdt ++q   ++ll++  +++++vGd dqsiy wrGa+v+ ++ +  +f+   +++t+ l+ nyrst+ni+ aa+++i  
  MMETSP1061-20121228|2661_1 372 IRLNGQYVIIDQGEQIRILNECLKEQEIDlkHTEVKPIQIITTIGKIKETFAKGQDpfANTPGRppgRTMQMTRKVYFRYREKLLANNALDFDDLILLTRELLMEDEELRHRLHRRWPHVLVDEYQDTSRVQMDLIKLLTS--SSLFVVGDADQSIYSWRGAHVGSLEDVKTEFEpygTVQTVFLKENYRSTSNIVRAAEKVISS 574
                 57888999****************98877225567888999999999997666554223444442225677789*****************************************************************75..789*******************9999999987444689999******************975 PP

  == domain 4    score: 80.5 bits;  conditional E-value: 3.7e-26
   TIGR01075 307 geeGekislysafneldearfvverikaweeeG..galdeiavlyrsnaqsrvleeallrasipyriyGGl.rfferqeikdalaylrlianrnddaafervvntPtrGiGdrtldevr 422
                  ++G + ++ +  +e  earfvv+ i +++ +      d +a++yr+naqsr leea +++++py i GG   f++r+eikd l++lr + n nd+ ++ r + tP++GiG++   e r
  MMETSP1061-20121228|2661_1 621 RGAGPSPRVVACEDERSEARFVVDTILELKASNdlAPGDTVAMVYRTNAQSRYLEEACVQQNLPYVIRGGAgGFYKRAEIKDCLCFLRWLYNGNDEGSMIRAMKTPSKGIGAKGYGEFR 739
                 55666667777888999*********999865411456889*****************************846***************************************9877766 PP

  == domain 5    score: 89.3 bits;  conditional E-value: 8e-29
   TIGR01075  443 kvlagraasalarfleliealaeetadlplaeqidrvlkdsgllemykqekgekae..arienleelvtaarefk..........lpeeaed....lleltaflshaal.....eaGegqadagedavqlmtlhsakGlefplvflvGleeGlfPsemsldek.G..rleeerrlayvgitrarkkltltyaearrlygk.......ekyhipsrfieel 631 
                  + ++ ra +++ +f   + +++ ++    + + + +v+++ +ll+++      k+e  +r en++el +aa+++            ++++ d       l++fl   al     ea e++ d     v+lmt+h++kG ef+ vf+vGleeG +P + +++e  G  +leee+rl+yv++tra+ +l+lt+ ++   ++k       ++ ++ srf++ +
  MMETSP1061-20121228|2661_1  790 DHISKRALNNFLKFSAQMGEIRANAYRADVGTLLLFVIEELKLLDHFDAISKSKSEflERKENVKELRNAANKYAsygpsltrgpSDNDNGDvmgvDSALSSFLDDVALvsdtaEANEEDKDPSRMVVNLMTIHASKGTEFDCVFVVGLEEGTLPCSPAIQEGpGsvQLEEEKRLCYVAMTRAKTRLVLTWRKEVTSFSKwntegpkTNSKQRSRFLNAI 1009
                  56677888888999999999999999999999999************987766665448***************99*****9986444455533323467889998888444446777777888889*********************************996333379*********************988877766511111114455566666655 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.037
   TIGR01075  667 fklGqrvrhakfGeGvivdle..gsgessrlqiafe 700 
                  f +G+rv h ++G+G++v+       e+++++++fe
  MMETSP1061-20121228|2661_1 1218 FPVGVRVVHMNLGKGTVVEPPpfRTIEDAKVRVRFE 1253
                  679***************965224567778888776 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   2.8e-12   1.4e-09      19     106 ..     207     320 ..     204     336 .. 0.75
   2 !   88.7   0.3   9.4e-29   4.8e-26     339     806 ..     442     939 ..     439     941 .. 0.74
   3 !   15.4   0.0   1.3e-06   0.00067     855     898 ..     957     998 ..     946    1036 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 2.8e-12
   TIGR02785  19 VsAsAGSGKTaVLveRiikkilsgvdvdrLLvvTFTnaaAkemkerieealekelaeep...........................ekkhlrrQlallnkAnIsTldsFclkvir 106
                 V A  GSGKT VL  Ri  ++l++    r+L vTFT++aA emker+e+ l+++ +e++                           ++ + +  l  +++ +++T++s c k++r
  MMETSP1061-20121228|2661_1 207 VIAGPGSGKTKVLTTRIA-HLLREDPYGRILAVTFTRKAAGEMKERLERLLREQHQEKTsrmggggrsssgdeeefvavaqtadgrADAEGAVALDGIERVELGTFHSICAKILR 320
                 66889***********85.67788889************************9999988766666666666666666666666555444444455556666666666666666665 PP

  == domain 2    score: 88.7 bits;  conditional E-value: 9.4e-29
   TIGR02785 339 qlvkqfieafeaeKreknvldfsDlehyalqILsnenedssevaesyrekFeEvlvDEYQDtnlvQEsilqllkrgeeeegnlFmVGDvKQSIYrFRlAdPslFleKYkrfaqegeeegkrIiLaeNFRSrkevldatNllFk..qlmdeevGeidYdeeaqLkfgaakypenadkktelllvekkaieeeeeeeid....eeaeildkaeqeaevvaekikelikeefkvydkktgeyrpvkYkdiviLlrsrekalqileelkkqgIPvkvn.daenYfqatEvrvmlslLrvIdNPlQDipLvavlrSpivgldeeeLakirlenkdssfyealksyvkaekl................................eeedelaek.lkr...FldklqkwrefaktqsvseLiwkiYeetgyldyvgglpaGk....qRqaNLraLyerAkeyEk...tsFkGLfqF....vrfIer.lqekqkDla........eavavseeenvVrlmtIHkSKGLEfPvvfvlgld 806
                 q+++++  +++++   +n+ldf+Dl  ++ ++L +++    e ++ ++ ++  vlvDEYQDt++vQ  +++ll++       lF VGD  QSIY++R A      +  ++f   g  + + + L+eN+RS+++++ a   + +  q   + +  ++      L  + + ++e+ ++k++   ++ ++++++ + +      + +   ++ + ea+ v++ i el++++    d + g         +++  r++ + + ++e+  +q++P ++   a ++++ +E++  l +Lr + N   +  ++  ++ p  g+  +   + r      ++ ++++sy+++++                                  +ed+++++ l++   F  ++ + r+ a +  v +L+  + ee ++ld + ++ + k    +R+ N + L + A++y +   +  +G +      v  ++  l    +D+a        +++   +   vV+lmtIH+SKG Ef  vfv+gl+
  MMETSP1061-20121228|2661_1 442 QMTRKVYFRYREKLLANNALDFDDLILLTRELLMEDE----ELRHRLHRRWPHVLVDEYQDTSRVQMDLIKLLTS-----SSLFVVGDADQSIYSWRGAHVGSLEDVKTEFEPYG--TVQTVFLKENYRSTSNIVRAAEKVISsgQYQKQPISVVAE----VLAEA-EVHKEDDKDKNNASPTQRDDLRRAMKPKRGagpsPRVVACEDERSEARFVVDTILELKASN----DLAPG-------DTVAMVYRTNAQSRYLEEACVQQNLPYVIRgGAGGFYKRAEIKDCLCFLRWLYNGNDEGSMIRAMKTPSKGIGAKGYGEFR------DYCDLVQSYIRQNHPdcerptyldvlismtnrggdsdkdyllpegtpSAEDHISKRaLNNflkFSAQMGEIRANAYRADVGTLLLFVIEELKLLDHFDAISKSKseflERKENVKELRNAANKYASygpSLTRGPSDNdngdVMGVDSaLSSFLDDVAlvsdtaeaNEEDKDPSRMVVNLMTIHASKGTEFDCVFVVGLE 939
                 677888889***************************7....9********************************9.....58******************887777667776644..4789******************998723344555555543....33333.555555566667777777666666554432212256778899999************9993....33333.......35888899********************9978999*********************************9887766444433......3333333333333323333333344444444556688999*****9966777766534551115679**********************************99855667********99999886533255677554211112222220222233333111100003334445556**********************97 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 1.3e-06
   TIGR02785 855 llsEemRvlYVAlTRAkekLiLvgsvkdekkevkkwskakavse 898
                  l+Ee R+ YVA+TRAk +L+L  + ++e +++ kw+++  +++
  MMETSP1061-20121228|2661_1 957 QLEEEKRLCYVAMTRAKTRLVL--TWRKEVTSFSKWNTEGPKTN 998
                 589****************988..56777788888988765544 PP

>> TIGR00609  recB: exodeoxyribonuclease V, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.2e-09   6.2e-07      18     131 ..     211     324 ..     200     338 .. 0.77
   2 !   80.5   0.0   3.5e-26   1.8e-23     340     461 ..     458     581 ..     443     725 .. 0.80
   3 !   12.3   0.0   1.4e-05    0.0069     725     748 ..     914     937 ..     887     943 .. 0.79
   4 !   16.5   0.5   7.3e-07   0.00038     789     879 ..     957    1044 ..     947    1115 .. 0.60

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.2e-09
   TIGR00609  18 AGTGKTftiaalvlrlllekglltveeiLvvTFTkaAteELktRirerieealkalkak.....eetsqellellkeeiekekkkqlikrlrlAlatldeaaiyTihgfCqrvleqyaf 131
                  G GKT  +   +  ll e       +iL+vTFT++A  E+k+R+   + e  ++  +        +s +  e+++ +  +    ++      Al  ++ +++ T h++C ++l+ ++ 
  MMETSP1061-20121228|2661_1 211 PGSGKTKVLTTRIAHLLRED---PYGRILAVTFTRKAAGEMKERLERLLREQHQEKTSRmggggRSSSGDEEEFVAVAQTADG--RADAEGAVALDGIERVELGTFHSICAKILRYNGE 324
                 57788877777777777776...6789**********************9999998888899874444444444433333333..47789999*********************98765 PP

  == domain 2    score: 80.5 bits;  conditional E-value: 3.5e-26
   TIGR00609 340 rreigfddllsrLekaLkseegeklaqaireqypivLIDEFQDtDpqQyrIFsklfiaqketaLfLIGDPKQaIYsFRgADiftYlqakekar.....arytLdtNyRStaaLveainklFskaee...p 461
                 +++++fddl++  +++L +  +e+l++++  ++p vL+DE+QDt+ +Q    + l ++     Lf +GD  Q+IYs+RgA + +   +k +++     +   L+ NyRSt ++v a++k+ s  +    p
  MMETSP1061-20121228|2661_1 458 NNALDFDDLILLTRELLME--DEELRHRLHRRWPHVLVDEYQDTSRVQMDLIKLLTSSS----LFVVGDADQSIYSWRGAHVGSLEDVKTEFEpygtvQTVFLKENYRSTSNIVRAAEKVISSGQYqkqP 581
                 5789*******99999998..579*************************9988776554....*****************************9999999999******************9987643341 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 1.4e-05
   TIGR00609 725 aelvkivTiHkSKGLeypiVflpf 748
                 + +v ++TiH+SKG e++ Vf+  
  MMETSP1061-20121228|2661_1 914 RMVVNLMTIHASKGTEFDCVFVVG 937
                 5689*****************865 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 7.3e-07
   TIGR00609  789 rlaedlrllYVAlTRAkkqlviglaelvkskskelaklllhksalgylkqdgetdeitglkqklakla.enaeievaeakpidaessvkena 879 
                  +l e++rl YVA+TRAk  lv+ + + v+s sk   +   ++s    +   + ++ i+  k + +  +  +++ ++++     ++s+  +++
  MMETSP1061-20121228|2661_1  957 QLEEEKRLCYVAMTRAKTRLVLTWRKEVTSFSKWNTEGPKTNS---KQRSRFLNA-IVSKKSRAKDAKrNPKGAQSKTRMALRNASTSTSRS 1044
                  689**********************999987776654444443...222222222.222222222222244444444444444444444444 PP

>> TIGR02784  addA_alphas: double-strand break repair helicase AddA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.1e-11   5.8e-09      15      65 ..     207     256 ..     202     266 .. 0.87
   2 !   65.5   0.0   1.4e-21     7e-19     342     510 ..     442     589 ..     438     730 .. 0.77
   3 !    8.2   0.0   0.00028      0.14     769     796 ..     909     936 ..     886     946 .. 0.78
   4 !   13.6   1.4   6.3e-06    0.0032     846     883 ..     957     992 ..     944    1099 .. 0.64

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.1e-11
   TIGR02784  15 vsAnAGsGKThvLtdRViRLLLagvePekiLClTyTkAaAaemqnRvfkrL 65 
                 v A  GsGKT+vLt R++ LL ++ +  +iL +T+T+ aA em++R+ + L
  MMETSP1061-20121228|2661_1 207 VIAGPGSGKTKVLTTRIAHLLRED-PYGRILAVTFTRKAAGEMKERLERLL 256
                 66889*************998665.5579*****************97766 PP

  == domain 2    score: 65.5 bits;  conditional E-value: 1.4e-21
   TIGR02784 342 rlaeallkeyealKkergllDfeDLIertvaLLarksagaWVlYkLDrgiDHiLvDEAQDTspeQWeiieaLaeeFfsGegarevaeRtiFaVGDeKQsIYsFQGadpeefaeerrelerkveavekkfedvkLtlSfRStedvLaaVDevfadpeaakglsaeseave 510
                 ++++++  +y+++  ++ +lDf+DLI  t++LL ++++    +++L r   H+LvDE QDTs  Q ++i+ L++              ++F+VGD  QsIYs+ Ga+  ++++ ++e+e        +++ v L+  +RSt+++ +a ++v++  + +k   +   +v 
  MMETSP1061-20121228|2661_1 442 QMTRKVYFRYREKLLANNALDFDDLILLTRELLMEDEEL---RHRLHRRWPHVLVDEYQDTSRVQMDLIKLLTS-------------SSLFVVGDADQSIYSWRGAHVGSLEDVKTEFEPY-----GTVQTVFLKENYRSTSNIVRAAEKVISSGQYQKQPISVVAEVL 589
                 566677789999999*******************99986...9****************************974.............37************************99999764.....4689999******************999777665555444444 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00028
   TIGR02784 769 emdkerdevRvmTvHaaKGleapvVflv 796
                 + d +r  v +mT+Ha+KG e   Vf+v
  MMETSP1061-20121228|2661_1 909 DKDPSRMVVNLMTIHASKGTEFDCVFVV 936
                 56788999******************98 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 6.3e-06
   TIGR02784 846 aeeEyrRLLYVamTRAedrLivcgargkkeskkesWya 883
                 + eE +RL YVamTRA+ rL+++ +++  + +   W +
  MMETSP1061-20121228|2661_1 957 QLEEEKRLCYVAMTRAKTRLVLTWRKEVTSFS--KWNT 992
                 679******************98776222222..3543 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00048      0.25     161     222 ..     200     258 ..     163     268 .. 0.85
   2 ?   -3.6   0.0       1.2   6.2e+02     346     373 ..     550     576 ..     545     602 .. 0.73
   3 !    6.5   0.0    0.0011      0.57     528     577 ..     919     983 ..     911     992 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00048
   TIGR01447 161 lksnfslitGGPGTGKTttvarlllalikqskaqgklrialaaPTGkAaarLteslkkavkk 222
                 l+s ++ ++ GPG GKT + +  ++ l+ + +     ri  +  T kAa  ++e l++ +++
  MMETSP1061-20121228|2661_1 200 LRSVVTRVIAGPGSGKTKVLTTRIAHLLREDPY---GRILAVTFTRKAAGEMKERLERLLRE 258
                 6778888999*******9999999999999998...79*99***********9999987766 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.2
   TIGR01447 346 nlvmLkkshRfkkksgigqLakain.sgd 373
                 ++v+Lk+++R+  +  i + a+ +  sg+
  MMETSP1061-20121228|2661_1 550 QTVFLKENYRSTSN--IVRAAEKVIsSGQ 576
                 68899999999884..6666666553444 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0011
   TIGR01447 528 amtvHKSQGSefdevlli.Lpkee............spvL..trellYTgiTRakkqlevvsdke 577
                  mt+H S G efd v ++ L++++            s  L  ++ l Y ++TRak +l +   ke
  MMETSP1061-20121228|2661_1 919 LMTIHASKGTEFDCVFVVgLEEGTlpcspaiqegpgSVQLeeEKRLCYVAMTRAKTRLVLTWRKE 983
                 59*************99865444322211111111122342235689999999999888776666 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1     0.066        34     345     386 ..     209     250 ..     200     255 .. 0.80
   2 ?   -2.3   0.0      0.31   1.6e+02     421     497 ..     492     571 ..     473     587 .. 0.59
   3 ?    4.5   0.0    0.0029       1.5     650     699 ..     919     983 ..     876     999 .. 0.61

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.066
   TIGR01448 345 GGPGtGKtTvtkaiielaeelegllevvLaAPTGrAakrlaE 386
                  GPG GKt v  + i++  + +   +++    T +Aa  ++E
  MMETSP1061-20121228|2661_1 209 AGPGSGKTKVLTTRIAHLLREDPYGRILAVTFTRKAAGEMKE 250
                 69*******998888888777756677777789999999988 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.31
   TIGR01448 421 ivDEvsmvdtwllssllaavpddarlllvGDadqLPsVgaGqv...lkdLiq....sklipvvrLtkvyRqaeessiitlAhki 497
                 +vDE    dt  ++  l ++   + l +vGDadq      G     l+d+       +++++v L++ yR    s+i+++A k+
  MMETSP1061-20121228|2661_1 492 LVDEYQ--DTSRVQMDLIKLLTSSSLFVVGDADQSIYSWRGAHvgsLEDVKTefepYGTVQTVFLKENYRS--TSNIVRAAEKV 571
                 556554..555555556666677889999999995433334330113332221111345666666666664..56777777765 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0029
   TIGR01448 650 alsiHksqGsefsvVilp............iveah.lrmL..eRnllYTalTRakkklvlvGske 699
                  ++iH s+G+ef +V ++            i+e    + L  e+ l Y a+TRak++lvl   ke
  MMETSP1061-20121228|2661_1 919 LMTIHASKGTEFDCVFVVgleegtlpcspaIQEGPgSVQLeeEKRLCYVAMTRAKTRLVLTWRKE 983
                 47888888888888865421111111111122211112332257899**********99976655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.99u 0.19s 00:00:01.18 Elapsed: 00:00:00.98
# Mc/sec: 1917.88
//
Query:       MMETSP1061-20121228|2663_1  [L=758]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 2779.10
//
Query:       MMETSP1061-20121228|2666_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19    9.5   7.2       0.13   10.0   4.0    1.5  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.0   3.2e-05      0.13      37      99 ..     108     172 ..      99     174 .] 0.55

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.2e-05
   TIGR03499  37 g.glfskkkvevvaaideee.sasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaa 99 
                   g+f ++ vev+ a  +++   ++a++++++ + +++++p+ + +++++++++++++++++e++
  MMETSP1061-20121228|2666_1 108 LlGVFTERVVEVTTARGTNNtIGNNATAPNPSYQSVQQQQPRHRLEEDDPRQQQQQQQQQQQEQE 172
                 25899**********99999523334444444444444444444444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 850.60
//
Query:       MMETSP1061-20121228|2670_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1061-20121228|2667_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-18   65.4   0.0    2.3e-16   57.8   0.0    2.1  2  TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase
    3.7e-10   37.3   0.0    1.8e-09   35.1   0.0    1.8  1  TIGR00546 lnt: apolipoprotein N-acyltransferase
    6.6e-06   23.1   0.0    1.1e-05   22.4   0.0    1.3  1  TIGR04048 nitrile_sll0784: putative nitrilase, sll0784 family


Domain annotation for each model (and alignments):
>> TIGR03381  agmatine_aguB: N-carbamoylputrescine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0015         2       4      43 ..      25      64 ..      23      98 .. 0.90
   2 !   57.8   0.0   1.7e-19   2.3e-16      89     242 ..     169     318 ..     163     326 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0015
   TIGR03381  4 aavqlalsedveeniekaeklvreaaakGaqiillpelfe 43
                a+ ql  ++d+ +n+  ++     a akGa +++lpe f 
  MMETSP1061-20121228|2667_1 25 AVAQLRSTSDKFRNLVDIAVCAGLARAKGASMLFLPECFG 64
                6789*********************************995 PP

  == domain 2    score: 57.8 bits;  conditional E-value: 1.7e-19
   TIGR03381  89 kagnalynslavidadGevlgvyrksh.....iPdgpgyeekfyfkpGdtGfkvwdtryakiGvgicWdqWfpea.aralalkGaevllyPtaiGsePadaeldskehWqramqGhaaanvvpvvaanrigkeveaeleltfyGssfiadetGelvaead 242
                  +   +yn+ +v+d++G+v   yrk h     iP     +e     pG t + v d+  +++Gv+ic+d  fpe+ +r +  +Ga +ll P+a    P       ++hW+  ++ +a  n  +v+aa ++g     +++ + +G s+  d +G+++a+a+
  MMETSP1061-20121228|2667_1 169 ANPPRVYNTHVVMDSEGTVRASYRKIHlfdvsIPGKVELRESKTTAPG-TELVVCDSPLGRLGVTICYDLRFPETyTRLVEEMGARILLVPSAFTV-P-----TGAAHWHALLRARAIENQCYVLAAAQYGIH---NAKRDSFGRSLAVDPWGKILADAG 318
                 566789*********************555555777788888888888.7899*********************95688999***********865.5.....4689************************98...6778889************99986 PP

>> TIGR00546  lnt: apolipoprotein N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.3e-12   1.8e-09     246     385 ..     167     293 ..     154     304 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.3e-12
   TIGR00546 246 kgq..leyyNsvllldpggevvqrydKvkLVPFGEyiPlkfvfkqlskllelaseqesfakGrgvqvlklkggvklavlICYEsifpelvral.arqgaelLvnltNdaWfkkssapwqhfalarlRAiEngrplvratntGi 385
                 +++   + yN+ +++d +g v   y+K++L  F   iP     + ++ ++     ++  a+G +  v  ++ g +l+v ICY+  fpe +  l  + ga +L++++  a      +++  +al r RAiEn+ +++ a+  Gi
  MMETSP1061-20121228|2667_1 167 DEAnpPRVYNTHVVMDSEGTVRASYRKIHL--FDVSIP-----GKVELRE-----SKTTAPGTELVVCDSPLG-RLGVTICYDLRFPETYTRLvEEMGARILLVPS--AFTVP-TGAAHWHALLRARAIENQCYVLAAAQYGI 293
                 3334589***********************..555788.....2333333.....334567***********7.****************9997788********8..44444.488888999****************9998 PP

>> TIGR04048  nitrile_sll0784: putative nitrilase, sll0784 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   7.8e-09   1.1e-05     102     223 ..     170     298 ..     164     363 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 7.8e-09
   TIGR04048 102 degslynaqllfdadgelvlkrrkit......ptyhe.rmvwgqgdgaglkvvdtavgrvgalacwehynplaryalmaqheeihvaqfpgslvgqifadqievtirhhalesgcfvvnatgw.lteeqk 223
                 +   +yn+ +++d++g++    rki       p   e r       g+ l v d+ +gr+g   c++   p   y+ + ++    +   p ++  +  a   ++ +r  a+e  c+v++a+ + ++++++
  MMETSP1061-20121228|2667_1 170 NPPRVYNTHVVMDSEGTVRASYRKIHlfdvsiPGKVElRESKTTAPGTELVVCDSPLGRLGVTICYDLRFPE-TYTRLVEEMGARILLVPSAFTVPTGAAHWHALLRARAIENQCYVLAAAQYgIHNAKR 298
                 55679*******************9533332344333366777888999*******************9996.58888888899999*******************************999873444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1744.14
//
Query:       MMETSP1061-20121228|2669_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.19s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 2252.92
//
Query:       MMETSP1061-20121228|2678_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.43
# Mc/sec: 1071.26
//
Query:       MMETSP1061-20121228|2676_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 1368.92
//
Query:       MMETSP1061-20121228|2672_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.31    8.7  15.9        2.9    5.6  11.0    2.4  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA


Domain annotation for each model (and alignments):
>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  11.0   0.00071       2.9      34     144 ..     170     281 ..     147     284 .. 0.59

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00071
   TIGR03927  34 kdiEkntellqgeetelekelftpeeqkkikkkkkkekkeqeelkdqLfsenatesntvkktkkqL.Fsseyeqtsssseste.....eeetektssilllvliaglillliagiyf 144
                 ++ E +++++q  + ++e+    ++++ + + +++++++ + e+++q  +  +      ++++  L +s ++ qt+ s+ +t+       +++k++s+ll++l+++l+l+++a +++
  MMETSP1061-20121228|2672_1 170 QQYEGEQQREQ--QQQREQ---QQQWEQQRQRQQQQQNENENEKQQQPIQHLQLRIVPDEDKSSTLtDSISAGQTVPSTGETTgdspeINKSKKRGSVLLWMLGIFLFLAMCALFAI 281
                 44444555555..333333...23333333333333333333444444443333444444444444234455555555555555676678999*******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       602  (0.146758); expected 82.0 (0.02)
Passed bias filter:                      248  (0.0604583); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1049.47
//
Query:       MMETSP1061-20121228|2680_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.3    4.4  14.6        0.8    5.8   7.0    1.9  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        2.6    4.0  16.2          4    3.4  11.2    1.2  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.016        33     312     373 ..      27      75 ..      14      99 .. 0.40
   2 ?    5.8   7.0   0.00039       0.8     339     422 ..     279     355 ..     253     371 .. 0.49

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.016
   TIGR02442 312 rkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeea 373
                 +k  e+e e  ++++++k++ +k +  + + +            ++ +g+ +++++++++++
  MMETSP1061-20121228|2680_1  27 DKMKEAE-EAADNDPDTKSALDKANGGNGNRG------------NSGGGSSSNNNNNNNNNN 75 
                 3322222.222222222222222222222222............211222111111111111 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.00039
   TIGR02442 339 kedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrsdkrgry 422
                  ++e  e++++e+ +++e +  ++d +++++k+   +++e++e+va+++a+ ++++ ++a ++  ++++ G +sk +++++++ 
  MMETSP1061-20121228|2680_1 279 IKQEI-EQQEREKLEEDE-RKRQKDREKKQKKK---KKKEQKEKVAAAAAAAAAAPPAVALPS--QSKKKGIASKKNTEAKKNK 355
                 11111.222222222221.11222222222222...222223445566666666666666664..4778888888777544433 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  11.2     0.002         4     531     605 ..     273     349 ..     259     372 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.002
   TIGR01069 531 aeelekllkeleklkkel..eqkakelkererklkkelekeaqealkaakkeveeiirelkekkiekakekkatell 605
                  e++e++++e+e +++e   e ++k +k re+k kk+++ke++e+++aa   ++     +    ++k+k +++++  
  MMETSP1061-20121228|2680_1 273 PEKMEEIKQEIEQQEREKleEDERKRQKDREKKQKKKKKKEQKEKVAAAAAAAAAAPPAVALPSQSKKKGIASKKNT 349
                 689********999877522457889999*******************99988877666655555555555543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       602  (0.146758); expected 82.0 (0.02)
Passed bias filter:                      216  (0.0526572); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.40
# Mc/sec: 1316.59
//
Query:       MMETSP1061-20121228|2681_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1890.27
//
Query:       MMETSP1061-20121228|2686_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 1354.83
//
Query:       MMETSP1061-20121228|2688_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.18s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 280.48
//
Query:       MMETSP1061-20121228|2689_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.28
# Mc/sec: 245.12
//
Query:       MMETSP1061-20121228|2684_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1677.54
//
Query:       MMETSP1061-20121228|2691_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-161  537.1   0.0   4.7e-106  353.4   0.0    2.0  2  TIGR00398 metG: methionine--tRNA ligase
    2.8e-42  142.6   0.2    1.4e-28   97.2   0.0    2.9  3  TIGR00422 valS: valine--tRNA ligase
    2.3e-30  103.3   0.0    4.6e-22   75.8   0.0    3.4  3  TIGR00392 ileS: isoleucine--tRNA ligase
    8.9e-22   74.8   0.2    1.2e-13   47.9   0.0    2.9  4  TIGR00396 leuS_bact: leucine--tRNA ligase
    5.5e-20   68.8   0.7    3.8e-12   42.9   0.0    2.8  3  TIGR00395 leuS_arch: leucine--tRNA ligase
    1.9e-14   51.4   0.0    1.6e-07   28.6   0.0    2.2  2  TIGR00435 cysS: cysteine--tRNA ligase
    1.6e-05   21.7   0.0      0.011   12.4   0.0    2.2  2  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase


Domain annotation for each model (and alignments):
>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.0   0.1     7e-57   4.1e-54       2     141 ..      71     211 ..      70     217 .. 0.96
   2 !  353.4   0.0    8e-109  4.7e-106     178     529 ..     218     572 ..     211     573 .. 0.95

  Alignments for each domain:
  == domain 1    score: 182.0 bits;  conditional E-value: 7e-57
   TIGR00398   2 lvTtalyYangkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAesegltPkelvdklaeefkklfkllnisfdrFirTtdeehkeivqkifekllenGyiyekeikglYcvecesflpdr.yvegecpk 141
                  +Tt++yY+n+kpH+Gh++t+ + Dvlar+ rl+G ev+f+ gtDehG+k+e++Ae++g+ P+++vd+++  f +l++ll+i +d+FirTt++ hke vq++++ l+++Gyiy+++++g+Y+v++e f+ ++  v+g+ p+
  MMETSP1061-20121228|2691_1  71 QITTPIYYVNDKPHIGHAYTSTACDVLARFMRLSGREVFFLSGTDEHGQKVEQSAEKKGIPPQQFVDEVSVSFTELLDLLEITNDKFIRTTEQAHKESVQHLWTSLVDKGYIYKGTYSGWYSVRDECFYNESeLVDGKAPT 211
                 69********************************************************************************************************************************99667777665 PP

  == domain 2    score: 353.4 bits;  conditional E-value: 8e-109
   TIGR00398 178 lkeeehyFfrlskfekkleelikknpeskklasevknvlenflkegLkdlaitRdlvewGipvPkdpnkvvYVWldAligYisalse.eknatekfkkywkekedaelihliGkdivrfHtiywPamllalelklpkqlvahgyltvegkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkeaseedekllkkieealekidealekfefkkaleeilklvsegnklideekPwelakee.ekekellavllelirvlsillkpilpklsekilkllnleleadkl.......lkklekkklekaeklfkkl 529
                 + +e++yFf+ls+fe+kl e+++ np+++++++++++ +++f+++gL+dl+++R++++wG+pvP d+++++YVW+dAl +Yisal++ +++a+ +++kyw++      +h++Gkdi+rfH++ywPa+l+a++l+lpk ++ahg++t +g+k+SkS+gnv+dp dl++ yg+d +R++l++e+++++D+dfs +++  +vN++l+n+lgNl +Rtl++++k++++  ++    +eede ll++++  +e++++a+ + + ++  +e++++v ++nk+id ++Pw+l k++ ++  ++l+v++e++r ++il +pi+p +++kil+ll +  e+ ++       +k + ++ ++k++ +f ++
  MMETSP1061-20121228|2691_1 218 VAKEDSYFFKLSAFEDKLMEYYEANPDFIAPKTRRNE-VTAFVEGGLRDLSVSRTSFSWGVPVPDDDDHIMYVWMDALTNYISALGYpNTDADSDYSKYWPAA-----MHIVGKDILRFHAVYWPAFLMAADLPLPKRIFAHGWWTKDGEKISKSLGNVIDPVDLVETYGVDQTRFFLMAETNFGSDGDFSDKAMLLKVNNNLANELGNLCQRTLSMVFKNCGKATPTPGDFTEEDEALLASARGLHERCATAISEQKIQQYANELIEMVWDANKYIDAMAPWVLRKTDeQRMGTVLYVIMEVLRHVAILYQPIIPGSANKILDLLSVPEENRSFehlegeeYKIQPGTPISKPKGVFPRI 572
                 57899**************************999988.666******************************************99983567899******998.....************************************************************************************************************************9999*******************************************************9989999************************************9888776677666667777777777777776 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0   1.7e-14     1e-11      29      93 ..      64     128 ..      59     197 .. 0.91
   2 ?   -0.5   0.0     0.082        48     357     414 ..     222     280 ..     205     282 .. 0.80
   3 !   97.2   0.0   2.4e-31   1.4e-28     447     699 ..     283     537 ..     278     548 .. 0.87

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 1.7e-14
   TIGR00422  29 deekesfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkk 93 
                 d+ k++f i++P  +v  + HiGHa++ +  D+l+R+ r++g +v fl G+D +g  +++  Ekk
  MMETSP1061-20121228|2691_1  64 DDGKRPFQITTPIYYVNDKPHIGHAYTSTACDVLARFMRLSGREVFFLSGTDEHGQKVEQSAEKK 128
                 566789*************************************************9999999987 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.082
   TIGR00422 357 kQWfVkvekLadkaleaaekegeikfv.PkrfekeylsWle.elkdWcISRQli.wghriP 414
                 + +f k++ + dk++e  e   +++f+ Pk  ++e+++++e  l+d  +SR  + wg ++P
  MMETSP1061-20121228|2691_1 222 DSYFFKLSAFEDKLMEYYEA--NPDFIaPKTRRNEVTAFVEgGLRDLSVSRTSFsWGVPVP 280
                 568999999999*9999994..555544***********984699******8655999998 PP

  == domain 3    score: 97.2 bits;  conditional E-value: 2.4e-31
   TIGR00422 447 deDVLDTWfsSslwplstlgWpeek..kdlkkfyptsllvtgfDIiffWvarmillslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkk..veaarkFlnKlwnasrfvl.mnledkkeleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkelyeee.eeekkeakstlaivLdkllrllhpfiPflteeiyqkl 699
                 d+ ++  W++     +s lg+p+++  +d+ k++p+ + + g DI++f +++     +a    +P k ++ hg    ++g+K+SKSlgNvidP+dl+e yG+D +Rf+l+a++  G+D  ++ k   ++ +++ +n l n ++ +l m  ++  + + +   ++  d  +l++ + l +++  a+++ + ++ a++l e +W+  +++yi+++ + +  ++ e++  ++  +++ vL ++  l +p+iP  +++i + l
  MMETSP1061-20121228|2691_1 283 DDHIMYVWMDALTNYISALGYPNTDadSDYSKYWPAAMHIVGKDILRFHAVYWPAFLMAADLPLP-KRIFAHGW-WTKDGEKISKSLGNVIDPVDLVETYGVDQTRFFLMAETNFGSDGDFSDKAmlLKVNNNLANELGNLCQRTLsMVFKNCGKATPTPGDFTEEDEALLASARGLHERCATAISEQKIQQYANELIEMVWD--ANKYIDAMAPWVLRKTdEQRMGTVLYVIMEVLRHVAILYQPIIPGSANKILDLL 537
                 5567889***************8776699**********************98776666665666.89*****8.5789******************************************999866899**********87666615555555556677889***************************************9..69****999877666615555667889999**************9999887655 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.4e-08   8.4e-06      46      97 ..      78     129 ..      65     208 .. 0.77
   2 ?    0.4   0.0     0.049        29     422     476 ..     222     280 ..     217     281 .. 0.81
   3 !   75.8   0.0   7.8e-25   4.6e-22     534     797 ..     285     545 ..     281     557 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.4e-08
   TIGR00392  46 yanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekkl 97 
                 y n ++h+gha  ++  D++ r+ +++G +v +  G D HG  +E++ ekk 
  MMETSP1061-20121228|2691_1  78 YVNDKPHIGHAYTSTACDVLARFMRLSGREVFFLSGTDEHGQKVEQSAEKKG 129
                 7899********************************************9984 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.049
   TIGR00392 422 eqwFikvkeikeelleeik.kvkwvpekg.ekRlkkmlen.rkdWciSRqR.yWGvPip 476
                 +++F k+++++++l+e  + +  ++  k+ ++ ++ ++e   +d  +SR   +WGvP+p
  MMETSP1061-20121228|2691_1 222 DSYFFKLSAFEDKLMEYYEaNPDFIAPKTrRNEVTAFVEGgLRDLSVSRTSfSWGVPVP 280
                 6899999999999999877245788666669999****95389******7637****98 PP

  == domain 3    score: 75.8 bits;  conditional E-value: 7.8e-25
   TIGR00392 534 dvlDvWfdSGsspyavleyklen..ekkkevfpadlilEGsDQtrGWFyssllisvalsdkapy.kkvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvass.dpaedlkfsee.ilkevaekllkilnntlrFlllyanLdkfkpeekslkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskdrlyaekkdedkraaqttlyeiletlvkllapilpflaeeiyqnlkeekkees 797
                 +++ vW+d    + ++l y++++   + ++ +pa + + G D  r  F +    +  +  + p  k++  hG+   ++G+K+SKslgNv+dp +++++yG+D  R++++ + ++ +d  fs++ +l +v+++l + l n+ +  l  +++++    +++ +  +++e+D  +l++   l e+  +a+++ +++++ ++l + v +  +n Y++++   +  +++++    +  +++e+l +++ l  pi+p  a++i   l+  ++++s
  MMETSP1061-20121228|2691_1 285 HIMYVWMDALTNYISALGYPNTDadSDYSKYWPAAMHIVGKDILR--FHAVYWPAFLMAADLPLpKRIFAHGWW-TKDGEKISKSLGNVIDPVDLVETYGVDQTRFFLMAEtNFGSDGDFSDKaMLLKVNNNLANELGNLCQRTL-SMVFKNCG--KATPTPGDFTEEDEALLASARGLHERCATAISEQKIQQYANELIEMVWD--ANKYIDAMAPWVLRKTDEQRMGTVLYVIMEVLRHVAILYQPIIPGSANKILDLLSVPEENRS 545
                 799******************9987788899**************..99999999999988887589999**86.699*****************************99998********98725679*********99999887.67777666..88899999***************************************99..9*******99888877777777****************************999988765555 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   2.1e-16   1.2e-13      27     204 ..      66     239 ..      57     248 .. 0.86
   2 ?   -1.3   0.0      0.16        93     399     427 ..     251     280 ..     238     282 .. 0.79
   3 !   22.9   0.0   7.7e-09   4.5e-06     604     637 ..     361     394 ..     353     407 .. 0.85
   4 ?   -2.2   0.0       0.3   1.7e+02     168     191 ..     451     475 ..     438     504 .. 0.79

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 2.1e-16
   TIGR00396  27 ekkkyYiLsmfPYPsgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaiergtaPakwteeniakmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevidsdGrseRgdasve.kkelkqwvlkitkyaekLledL 204
                  k+ + i + + Y   + H+GH  + t+ Dvl+R+ rl g +v    G D  G   e+ a ++g+ P+++ +e    + + l+ l +    d+ ++tt++ +    q++++ l +kg +yk + + ++  +d+      e++  dG++  g  +ve   +   +++k+ ++ +kL+e  
  MMETSP1061-20121228|2691_1  66 GKRPFQITTPIYYVNDKPHIGHAYTSTACDVLARFMRLSGREVFFLSGTDEHGQKVEQSAEKKGIPPQQFVDEVSVSFTELLDLLEI--TNDKFIRTTEQAHKESVQHLWTSLVDKGYIYKGTYSGWYSVRDECFYNESELV--DGKAPTGA-EVEwVAKEDSYFFKLSAFEDKLMEYY 239
                 555555666666777788*************************************************************99998865..56789**************************************9988777887..99987654.4441345578***********99865 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.16
   TIGR00396 399 kekkgkkkvnYklrDWlvsRqRY.WGePiP 427
                 +++   + v+  lrD  vsR  + WG P+P
  MMETSP1061-20121228|2691_1 251 RRNEVTAFVEGGLRDLSVSRTSFsWGVPVP 280
                 555566677788********9988*****9 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 7.7e-09
   TIGR00396 604 ekmskskkngidPqeivkkyGaDalRlyilFasP 637
                 ek+sks +n+idP ++v+ yG D +R +++ ++ 
  MMETSP1061-20121228|2691_1 361 EKISKSLGNVIDPVDLVETYGVDQTRFFLMAETN 394
                 8*****************************7765 PP

  == domain 4    score: -2.2 bits;  conditional E-value: 0.3
   TIGR00396 168 i.dsdGrseRgdasvekkelkqwvl 191
                 +  + G  eR+ + +  ++++q+  
  MMETSP1061-20121228|2691_1 451 LaSARGLHERCATAISEQKIQQYAN 475
                 4467899999*99999999999965 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.3e-08   7.7e-06      22      70 ..      65     113 ..      48     128 .. 0.85
   2 ?    0.4   0.1     0.044        26     141     196 ..     158     213 ..     135     232 .. 0.86
   3 !   42.9   0.0   6.4e-15   3.8e-12     566     774 ..     310     535 ..     304     547 .. 0.67

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.3e-08
   TIGR00395  22 ddrekffltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplg 70 
                 d +  f +t +  y+n   h+Gh++t t  +v arf+r+ g++v+f  g
  MMETSP1061-20121228|2691_1  65 DGKRPFQITTPIYYVNDKPHIGHAYTSTACDVLARFMRLSGREVFFLSG 113
                 55667999************************************99766 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.044
   TIGR00395 141 fkttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsGegvtiv 196
                  +tt++ +++ ++   + L ++G i kG+    y+ +de   ++ +l  G   t  
  MMETSP1061-20121228|2691_1 158 IRTTEQAHKESVQHLWTSLVDKGYIYKGTYSGWYSVRDECFYNESELVDGKAPTGA 213
                 57999999999**99***********************998888888888776655 PP

  == domain 3    score: 42.9 bits;  conditional E-value: 6.4e-15
   TIGR00395 566 eefeyfyPldlrisakdLipnhLtfy.ifthvaifPeefWPrgivvnGyvllegkklskskGnlltlkeavekfGadvarlylldaaelvedadfkesev.....eaakkrlerlkefaeeiakksd.......levg.eelsfl..drwllsrlnkaikevkealenlelrkavkaalfelkkdvdyyrrrsgenvkd....vlaevleaiikLlaPfaPhlaeelye 774
                 +++  ++P  ++i +kd++  h +++  f  +a +P    P+ i ++G+ + +g+k+sks Gn++   + ve +G d +r++l+  ++  +d df ++ +     ++++++l +l + +  +  k+        ++ + e +  l   r l +r   ai e k +    el + v  a   + +   + +r+++e+       v+ evl  ++ L  P++P  a+++ +
  MMETSP1061-20121228|2691_1 310 SDYSKYWPAAMHIVGKDILRFHAVYWpAFLMAADLP---LPKRIFAHGWWTKDGEKISKSLGNVIDPVDLVETYGVDQTRFFLMAETNFGSDGDFSDKAMllkvnNNLANELGNLCQRTLSMVFKNCgkatptpGDFTeEDEALLasARGLHERCATAISEQKIQQYANELIEMVWDANKYIDAMAPWVLRKTDEQRMGtvlyVIMEVLRHVAILYQPIIPGSANKILD 535
                 5788899***************99884566666666...7*******************************************************9998743333445555555544333333232233333332222111222211344555555555444333222233333322222334445577777766644467778999999999999*****99988865 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   2.7e-10   1.6e-07      31     143 ..      79     191 ..      75     211 .. 0.87
   2 !   20.6   0.0     7e-08   4.1e-05     256     324 ..     353     424 ..     319     517 .. 0.71

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 2.7e-10
   TIGR00435  31 vYdasHlGhaRtlvvfDvlrrilqylgYdvqyvqNiTDidDKiikrAreeelteeevserfieayledleaLnvlkpdlelrvse..kideiielvekliekgyaYvssdgdvyf 143
                 v d+ H+Gha t  ++Dvl+r ++++g +v + +   +   K+ + A++++   ++ ++++  +++e l+ L++ + +  +r +e  + +++ +l  +l++kgy Y+ +  + ++
  MMETSP1061-20121228|2691_1  79 VNDKPHIGHAYTSTACDVLARFMRLSGREVFFLSGTDEHGQKVEQSAEKKGIPPQQFVDEVSVSFTELLDLLEITNDK-FIRTTEqaHKESVQHLWTSLVDKGYIYKGT-YSGWY 191
                 67999*****************************999999**********************************9988.56666611456799999**********977.44455 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 7e-08
   TIGR00435 256 ngflkiegeKmSKSlgNfitikdllkkfdpralRllll.svhyrnqldfseell.eeak.nalerlakalra 324
                  g+ + +geK+SKSlgN+i   dl++++   + R++l+ ++++ +  dfs++++  +++ n  ++l +  ++
  MMETSP1061-20121228|2691_1 353 HGWWTKDGEKISKSLGNVIDPVDLVETYGVDQTRFFLMaETNFGSDGDFSDKAMlLKVNnNLANELGNLCQR 424
                 3666779***************************98762679*******98864144442333444443332 PP

>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.8e-05     0.011      48     150 ..      81     184 ..      71     201 .. 0.80
   2 !    7.0   0.0   0.00081      0.48     276     330 ..     350     404 ..     325     420 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.8e-05
   TIGR03447  48 dathlGhaatylafdlvnrvlldaghkvhyvqnvtdvddPlleraerdGvdwrelgeseidlfredmealrvlpPrdyigavesi..devvelvekllaeGaaye 150
                 d  h+Gha t  a d++ r ++ +g++v +     +  + + + ae++G+  +++ ++    f e ++ l+ ++ +++i ++e    + v +l   l+++G  y+
  MMETSP1061-20121228|2691_1  81 DKPHIGHAYTSTACDVLARFMRLSGREVFFLSGTDEHGQKVEQSAEKKGIPPQQFVDEVSVSFTELLDLLE-ITNDKFIRTTEQAhkESVQHLWTSLVDKGYIYK 184
                 889***************************99877777777788999***999998766666666666665.567889988886522346667788888888875 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00081
   TIGR03447 276 yvhagmigldGekmskskGnlvl.vsklraaGeePaairlavlaghyredrewtde 330
                     g  + dGek+sks+Gn++  v  +++ G++ +   l +    + +d +++d+
  MMETSP1061-20121228|2691_1 350 IFAHGWWTKDGEKISKSLGNVIDpVDLVETYGVDQTRFFL-MAETNFGSDGDFSDK 404
                 444577899***********87426666667777654333.223455666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.54u 0.17s 00:00:00.71 Elapsed: 00:00:00.82
# Mc/sec: 933.58
//
Query:       MMETSP1061-20121228|2690_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1718.93
//
Query:       MMETSP1061-20121228|2695_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       391  (0.0953194); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 347.34
//
Query:       MMETSP1061-20121228|2696_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.55    5.6  19.4       0.61    5.4  13.5    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4  13.5   0.00015      0.61     732     819 ..      22     107 ..       2     116 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00015
   TIGR00927 732 pedkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaev 819
                  ++  ++e++ g q d  e+  ++  +++e+e +  +e+++  ++++ a++e ese+++ +  +Ge e++r+ ++e e+e ++  +++
  MMETSP1061-20121228|2696_1  22 DNSSNNKENETGNQHDETESVRTAPAKDGEQELS-PSETPHIAKDNDAAAKESESESVS-NTYQGEKEGDRETDHETETENDDSMSKH 107
                 2334567788899999999999999999988877.566666666666677777777665.5667888888888888888877766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|2698_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|2706_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 409.86
//
Query:       MMETSP1061-20121228|2707_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-10   36.3   0.0      3e-08   31.3   0.0    2.5  1  TIGR00083 ribF: riboflavin biosynthesis protein RibF


Domain annotation for each model (and alignments):
>> TIGR00083  ribF: riboflavin biosynthesis protein RibF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   7.3e-12     3e-08     168     287 ..      20     166 ..      18     168 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 7.3e-12
   TIGR00083 168 PYaikGtVihgqklgrt.lgfPTaNiklknqvlp..........lkggvyvv...vvllneevlkgvaniGkrptvnskkeelviEvhlld...............fsqelygqeikvellkkiRneqkFssldeLkkqIekDlkqAkk 287
                 P +++ +V++g  +g t lg PTaN+  +n              l +g+y     v + n++v+k+ + iG+ p   +  +++++E hl+                + +ely q+i++ ll ++R+e  F +l++L ++I++D+  A++
  MMETSP1061-20121228|2707_1  20 PLRLTSVVVKGYGRGSTdLGIPTANLSRDNIRFNlrganasfddLPTGIYWGlcrVGETNPTVYKTACSIGYNPYYGN--QRKTVEPHLIAsvgddrrhrsscgetLLGELYDQTIRLSLLGYLRPELPFEGLEKLVAAIKNDISDAER 166
                 7778889*******98769******98776555500011111114566665411145667789***********9988..789******962222222222222223468************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 942.78
//
Query:       MMETSP1061-20121228|2708_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 914.15
//
Query:       MMETSP1061-20121228|2705_1  [L=1094]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1094 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.45
# Mc/sec: 3208.80
//
Query:       MMETSP1061-20121228|2712_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-08   29.4   0.0    7.4e-08   29.3   0.0    1.0  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    8.7e-05   19.4   0.0     0.0001   19.1   0.0    1.0  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit
     0.0028   14.6   0.0     0.0032   14.4   0.0    1.0  1  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit


Domain annotation for each model (and alignments):
>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   5.4e-11   7.4e-08     111     185 ..       3      78 ..       1      90 [. 0.87

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 5.4e-11
   TIGR03207 111 ageallaialteprggsdaarlrlr..ierdgddyvlngektsisaadqadaavvfartgsveegargisallvpmd 185
                 +g+ l a +l+e ++gsda ++     +  dg  y l g+k  is a +a   +vfa     ++g +gi+a+lv  d
  MMETSP1061-20121228|2712_1   3 SGRCLSAFCLSEANAGSDAFSMTTTatASSDGSYYTLRGNKLWISNAREARLLLVFATV-DPSAGYKGITAFLVDRD 78 
                 688899*************99986511578999***********************965.567899********877 PP

>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   7.6e-08    0.0001     127     190 ..      12      76 ..       6      82 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 7.6e-08
   TIGR03204 127 fsepgsgsdlaslktkae..kkgdkyiingqktwttlaqhadlifclcrtdatakkqegisfilvd 190
                 +se  +gsd  s+ t a     g  y + g+k w + a+ a l+++++  d++a   +gi+  lvd
  MMETSP1061-20121228|2712_1  12 LSEANAGSDAFSMTTTATasSDGSYYTLRGNKLWISNAREARLLLVFATVDPSAGY-KGITAFLVD 76 
                 799**********998751156789***************************9975.577777766 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.3e-06    0.0032     120     188 ..       8      77 ..       2      86 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.3e-06
   TIGR03203 120 lafaqleknsrydlgdvsttakkkgdg..wvidgekfvvlngeaadtlivtartkgarrdrtgigvflvpa 188
                  af+  e n+  d + ++tta  ++dg  + + g+k+ + n  +a  l+v a    +    +gi  flv  
  MMETSP1061-20121228|2712_1   8 SAFCLSEANAGSDAFSMTTTATASSDGsyYTLRGNKLWISNAREARLLLVFATVDPS-AGYKGITAFLVDR 77 
                 5899999***********9998876653389*******************9977655.5677999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|2710_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1671.86
//
Query:       MMETSP1061-20121228|2714_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.08s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 827.93
//
Query:       MMETSP1061-20121228|2713_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-16   58.5   0.1    1.8e-16   57.7   0.0    1.4  1  TIGR03317 ygfZ_signature: folate-binding protein YgfZ


Domain annotation for each model (and alignments):
>> TIGR03317  ygfZ_signature: folate-binding protein YgfZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   4.4e-20   1.8e-16       3      65 ..     217     277 ..     215     279 .. 0.90

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 4.4e-20
   TIGR03317   3 wellrieagipeieaelseeflpqelnldalggvsfkKGCYvGQEvvaRmkyrgklkrrlvll 65 
                 ++l+r  ag++e++ el++  +  e n + l++vsf+KGCY+GQE++aR++++g +++r+++l
  MMETSP1061-20121228|2713_1 217 YNLIRKLAGVAEGS-ELKG-KVAAETNQEFLNAVSFQKGCYLGQELTARVQFTGAVRKRIMPL 277
                 88889999999988.7776.5789************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.49
# Mc/sec: 1408.78
//
Query:       MMETSP1061-20121228|2711_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.10s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 2138.82
//
Query:       MMETSP1061-20121228|2716_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.28
# Mc/sec: 377.76
//
Query:       MMETSP1061-20121228|2715_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.58    8.4   4.3       0.12   10.6   0.1    1.9  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.4      0.58   2.4e+03      21      39 ..      31      49 ..      28      52 .. 0.47
   2 ?   10.6   0.1   2.9e-05      0.12       7      41 ..      94     132 ..      90     139 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.58
   TIGR02811 21 gaaagavaaatgrvasasa 39
                 +a +++    +  asa +
  MMETSP1061-20121228|2715_1 31 SSASSSASSSASSSASARV 49
                4444555444444444444 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 2.9e-05
   TIGR02811   7 adlsRRdLL....kglavgaaagavaaatgrvasasaaa 41 
                 ++lsRR+ L    ++l++++aa+a+++  g  a+a+ ++
  MMETSP1061-20121228|2715_1  94 EGLSRRRWLsrvpQKLGTATAAAALVTSGGFPAQAASDS 132
                 6899**999444446677777777777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.21s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1425.48
//
Query:       MMETSP1061-20121228|2720_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       407  (0.0992199); expected 82.0 (0.02)
Passed bias filter:                      216  (0.0526572); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 390.47
//
Query:       MMETSP1061-20121228|2718_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1622.08
//
Query:       MMETSP1061-20121228|2719_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.23s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1687.57
//
Query:       MMETSP1061-20121228|2722_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.16s 00:00:00.22 Elapsed: 00:00:00.30
# Mc/sec: 307.97
//
Query:       MMETSP1061-20121228|2725_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.18s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 487.79
//
Query:       MMETSP1061-20121228|2726_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 671.94
//
Query:       MMETSP1061-20121228|2724_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1168.10
//
Query:       MMETSP1061-20121228|2728_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-05   20.7   0.0      0.018   12.3   0.0    2.2  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    0.00028   18.2   0.0     0.0069   13.7   0.0    2.1  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
      0.002   15.3   0.0     0.0026   14.9   0.0    1.1  1  TIGR03100 hydr1_PEP: exosortase A system-associated hydrolase 1
     0.0039   14.4   0.0       0.47    7.6   0.0    2.1  2  TIGR03611 RutD: pyrimidine utilization protein D


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0011       1.2      15     100 ..      47     137 ..      37     152 .. 0.68
   2 !   12.3   0.0   1.8e-05     0.018     187     250 ..     176     245 ..     172     246 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0011
   TIGR02427  15 vlvlinSLGtdlrlwdkvlealtk..dfrvlryDkrGHGlS.dvpegpysiedladdvlallDa..lgiekaavcGlSlGGliaqaLaarr 100
                 +++++     dl +  +  + l++  ++++++yD  G G+S   p+ +   +d  +    ll+   l+ e++++ G SlG   + +La+++
  MMETSP1061-20121228|2728_1  47 TILFSHGNAEDLGMIYDWFNDLARvlRVNIMAYDYSGYGKSnGSPSEDNCYADIESAYQYLLEVrgLQPEQIVLYGRSLGSGPSCYLASKT 137
                 4555555556777777777777662256789**********54566666666666666666664226678999999999988777777654 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.8e-05
   TIGR02427 187 erleeiavPtlviaGdeDgstPpelvreiadlvpg...arfaeieeaaH..lpnleqpe.afaallrdfl 250
                 +++ +i+ P+ ++ G++D + P+ + +++  ++p+   a+   +e+a+H  + +l +p  af + +++fl
  MMETSP1061-20121228|2728_1 176 DKAPSIQCPVFIVHGTQDEVVPFWHGEDLFMALPQqwrAKPFWVEGAGHnnIEALLRPTgAFVDKVVEFL 245
                 78899****************************9733345556888888444444444326777777776 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   6.8e-06    0.0069       4     103 ..      47     151 ..      44     154 .. 0.71
   2 ?    2.7   0.0     0.015        15     181     234 ..     168     225 ..     155     246 .. 0.58

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.8e-06
   TIGR03695   4 vlvlLHGf...lgskedwqalieeleekfsvlalDLpgHGksk.slkekeak.dfeeaaqellkelleklkiekviLvGYSlGGRialalaleape...rlegliles 103
                 ++++ HG    lg   dw +  +++  +++++a D  g Gks+ s++e++++ d+e+a q+ l e+   l+ e+++L+G SlG     +la +  +   ++ g+il s
  MMETSP1061-20121228|2728_1  47 TILFSHGNaedLGMIYDWFNDLARV-LRVNIMAYDYSGYGKSNgSPSEDNCYaDIESAYQY-LLEVRG-LQPEQIVLYGRSLGSGPSCYLASKTARegqSVGGVILQS 151
                 5666777612234455665555555.59999***********8777777766256666676.666655.59************9999999988776554588888876 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.015
   TIGR03695 181 lgkqpslweklkelklpvlylvGekDek.........FkkiakemqkllpalklevieeaGHn 234
                 +g      +k  ++++pv++++G +De          F ++ ++++     +k   +e aGHn
  MMETSP1061-20121228|2728_1 168 VGDRFPNIDKAPSIQCPVFIVHGTQDEVvpfwhgedlFMALPQQWR-----AKPFWVEGAGHN 225
                 555555567888999**********984331111111333333333.....556677888887 PP

>> TIGR03100  hydr1_PEP: exosortase A system-associated hydrolase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.5e-06    0.0026      58     132 ..      74     152 ..      35     160 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.5e-06
   TIGR03100  58 lpvlRfDyrGmGDsegelstFedieaDiaAAidafleaap.eleeivlwGlCDaAsAvlly....atadervaglvllnP 132
                 + ++ +Dy+G G s+g+  + ++  aDi+ A + +le    + e+ivl+G   +   ++      a + + v g++l  P
  MMETSP1061-20121228|2728_1  74 VNIMAYDYSGYGKSNGSP-SEDNCYADIESAYQYLLEVRGlQPEQIVLYGRSLGSGPSCYLasktAREGQSVGGVILQSP 152
                 67899**********975.6699***********9997643789******877766655552344466677888888777 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0     0.003       3.1      28     102 ..      64     138 ..      38     156 .. 0.73
   2 !    7.6   0.0   0.00045      0.47     194     227 ..     178     211 ..     170     245 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.003
   TIGR03611  28 ywapqlevleqefrvvvyDhrGtgrspeelaedysiaalaadvlelldaldiekahvv..GhalGgliglelalrkp 102
                 ++ +  +vl  + +++ yD  G g+s +  +ed   a++ +  + ll+  +++  ++v  G +lG+  +  la + +
  MMETSP1061-20121228|2728_1  64 WFNDLARVL--RVNIMAYDYSGYGKSNGSPSEDNCYADIESAYQYLLEVRGLQPEQIVlyGRSLGSGPSCYLASKTA 138
                 343334444..45799*****************99999999888888887776554443399999877777776665 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00045
   TIGR03611 194 ldriklpvlliaakDDlLvPytqsseLaekLPda 227
                 + +i++pv ++    D +vP+ + + L  +LP+ 
  MMETSP1061-20121228|2728_1 178 APSIQCPVFIVHGTQDEVVPFWHGEDLFMALPQQ 211
                 5689****************************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1691.86
//
Query:       MMETSP1061-20121228|2734_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       354  (0.0862994); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 1657.91
//
Query:       MMETSP1061-20121228|2732_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-91  302.4   0.0    1.7e-90  301.5   0.0    1.4  1  TIGR00322 diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
      1e-38  131.2   0.0    9.6e-37  124.7   0.0    2.2  2  TIGR03682 arCOG04112: diphthamide biosynthesis enzyme Dph2
    1.4e-25   87.7   0.0    8.7e-25   85.2   0.0    2.1  1  TIGR00272 DPH2: diphthamide biosynthesis protein 2


Domain annotation for each model (and alignments):
>> TIGR00322  diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.5   0.0   1.2e-93   1.7e-90      19     319 ..     153     500 ..     138     501 .. 0.91

  Alignments for each domain:
  == domain 1    score: 301.5 bits;  conditional E-value: 1.2e-93
   TIGR00322  19 rVaLQfPdgllkdavevad................ll....kekakgaevyilgdttyGaCcvdevaakhlgadliiHyGhsclspi.tsrlpvlyvfvkieidveklvealkeal........edkekkivllttvqyahaldeikkileeagye.eviipqlkprvlspgevlgctspalead..eedkvllfigdgrfhllglalatpkpk.vyvydpysskleeeeseaerllrrRyaaiekakda...........kkvGIivgtlggqgrlelierlkellkkagkkaytilvgeinpakLanfp.eiDafVvvaCprlslddske....fekpvltpyEleia 319
                 +VaLQ+P+gll +a+ ++d                      + +++  +v +lgd+tyGaCcvd+++a++lg+dl++HyGhscl+pi ++ +p+lyvfv+i+idv +lve++++++          ++ +++ll t+q++hal e+++ l+++ ye e++ipq kp  lspgevlgctsp l+++  ++ +v+lf++dgrfhl+++++++p++  +y+ydpy ++l+ee+++++++++ Ry+aieka+ +            ++GIi+gtlg+qg++ l+ ++++ l++++ ++++il++ei+p+kLa f  +iDa+V++aCprls+d++++       pvl+pyEl++ 
  MMETSP1061-20121228|2732_1 153 HVALQMPEGLLLYATVISDvlqrlvaatnksptgaTAgnadEDQQPLLRVSVLGDVTYGACCVDDLGAQALGCDLLVHYGHSCLVPIqHTAIPCLYVFVEITIDVPHLVECFHKTIlenpslqeGGGKPHVYLLGTIQFRHALMEARRLLRSEPYEyEITIPQAKP--LSPGEVLGCTSPGLSSSgeNQTAVVLFVADGRFHLESTMISNPHIAkFYRYDPYPKTLTEESYDHTKMKSLRYEAIEKARRKiqtkkqegagsAVFGIILGTLGRQGNPALLTKIQTQLRQQKLRSFVILASEITPSKLALFRnKIDAWVQIACPRLSVDWGHAlsgdSSVPVLNPYELFVC 500
                 7******************77777777777776651155688999*******************************************9**************************999888765567889********************88877646999999**..************99999999*************************77********************************9877777777777678************************************************66****************9863322689********986 PP

>> TIGR03682  arCOG04112: diphthamide biosynthesis enzyme Dph2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0034       4.6       4      25 ..     153     174 ..     150     185 .. 0.86
   2 !  124.7   0.0     7e-40   9.6e-37      30     299 ..     201     504 ..     192     518 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0034
   TIGR03682   4 kvllqlPeGLkrealeiaekle 25 
                 +v+lq+PeGL  +a  i+++l+
  MMETSP1061-20121228|2732_1 153 HVALQMPEGLLLYATVISDVLQ 174
                 699************9999986 PP

  == domain 2    score: 124.7 bits;  conditional E-value: 7e-40
   TIGR03682  30 evilsgepvfGaCDladdevlel.vDlivhlGHspl.envkseikvifieakskedveeeveealee......lkk....kkvglvttiqylkklekvaeiLeekgievvigkgdkrvaapgqvLGCnfsaaksv...eadavlfvgtGkFh..plglalatkkeVvlvdplsgkvedieeeiekllrvrlakiskal......dakk.......vgilvstkkGQlrkelaeelkklleekgkeallvlldeispdkllnle..ldavvvtaCPRiaiDdaerf....kkpvltpeEleivlgkr 299
                  v + g+ ++GaC + d  ++ l +Dl+vh+GHs l +  ++ i+ +++ ++ + dv + ve   +       l++     +v+l+ tiq+ + l +++++L+++ +e  i  ++ +   pg vLGC+     s+   ++ +vlfv++G+Fh  + +++     + + +dp+ + +++ + +  k+  +r+ +i+ka       +  +       +gi+++t   Q  + l  +++++l+++  + +++l+ ei+p+kl  ++  +da v +aCPR+++D  +      ++pvl+p+El ++l ++
  MMETSP1061-20121228|2732_1 201 RVSVLGDVTYGACCVDDLGAQALgCDLLVHYGHSCLvPIQHTAIPCLYVFVEITIDVPHLVECFHKTilenpsLQEgggkPHVYLLGTIQFRHALMEARRLLRSEPYEYEITIPQAKPLSPGEVLGCTSPGLSSSgenQTAVVLFVADGRFHleSTMISNPHIAKFYRYDPYPKTLTEESYDHTKMKSLRYEAIEKARrkiqtkK--QegagsavFGIILGTLGRQGNPALLTKIQTQLRQQKLRSFVILASEITPSKLALFRnkIDAWVQIACPRLSVDWGHALsgdsSVPVLNPYELFVCLDQA 504
                 577889*********9999***************986667888998888888866666555443333333577333455689*********************************************9877766665588999*********55566666778899**********8888889************9987775431..2344445599*****************************************9998445***************87765222268********8887665 PP

>> TIGR00272  DPH2: diphthamide biosynthesis protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   6.4e-28   8.7e-25      82     370 ..     200     504 ..     146     519 .. 0.72

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 6.4e-28
   TIGR00272  82 kkvfvLaDtaYssCCvDevaaehvdaeavvhfGeaClsais..klpvvYvlGslpidldklekelqraa...ddlse.....kivLladarfskeqekvlkvlkellygdrhlkesilpsvdvekaeekfvilgrtfsvpkdvdlqekdlvliGqhdsedllsilllsyssvstvlqfdpisdkileesvsgssakLrrRyklveklrd.........ag..viGivvgtlgvdktreavnelrklikkagkkiYllavGkvnlvaklanfedidvfvllaCsessvi....dskefyrPivtpfelelaLsee 370
                  +v vL D +Y++CCvD+  a+ + ++ +vh+G++Cl +i+   +p +Yv+ ++ id+ +l++++ +++   + l+e     ++ Ll   +f +++ +  + l+     + +  e+  p+ + +   e   +lg t +   +    ++ +vl+   d    l   + s +++++++++dp  +++ ees   +      Ry  +ek+r          ag  v Gi++gtlg +     + +++  ++++  + +++    +++ ++  + + id +v +aC+  sv      s +   P++ p+el + L+++
  MMETSP1061-20121228|2732_1 200 LRVSVLGDVTYGACCVDDLGAQALGCDLLVHYGHSCLVPIQhtAIPCLYVFVEITIDVPHLVECFHKTIlenPSLQEgggkpHVYLLGTIQFRHALMEARRLLR----SEPYEYEITIPQAKPLSPGE---VLGCTSPGLSSSGENQTAVVLFVA-DGRFHLESTMISNPHIAKFYRYDPYPKTLTEESYDHTK-MKSLRYEAIEKARRkiqtkkqegAGsaVFGIILGTLGRQGNPALLTKIQTQLRQQKLRSFVILASEITPSKLALFRNKIDAWVQIACPRLSVDwghaLSGDSSVPVLNPYELFVCLDQA 504
                 3689************************************9878*********************987522223433444449***************999999....44444455567733333333...455555555554445566666666.565666678889999******************76443.33446666666653222222233544479***************************************7555555578***********999766656889999********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.45
# Mc/sec: 1633.73
//
Query:       MMETSP1061-20121228|2737_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|2739_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1061-20121228|2746_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.10s 00:00:00.18 Elapsed: 00:00:00.19
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|2745_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-06   26.4   0.0    2.2e-05   22.5   0.0    2.3  2  TIGR00003 TIGR00003: copper ion binding protein
     0.0017   16.7   0.0     0.0017   16.7   0.0    2.5  3  TIGR02052 MerP: mercuric transport protein periplasmic component


Domain annotation for each model (and alignments):
>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     1e-08   2.2e-05       1      63 [.     238     300 ..     238     303 .. 0.96
   2 ?    1.3   0.0     0.043        88      28      60 ..     399     431 ..     372     434 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1e-08
   TIGR00003   1 kktlqVkgmsCnHCVdkiEkfVGeleGVsavkvdlekekvvVeFdapkvsaeeIkeAildaGy 63 
                 k  +q +g+ C   +  i +    leGV +v+ +l  + v V+ d   + a  +++ + d+G+
  MMETSP1061-20121228|2745_1 238 KSSFQAQGICCASEIPVIRRILKPLEGVDTVNLNLTTKVVHVQHDYHTIDASRLAQTLTDQGF 300
                 6789**********************************************************8 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.043
   TIGR00003  28 VsavkvdlekekvvVeFdapkvsaeeIkeAild 60 
                 V+av  +   e v+Ve + + vs eeI + + +
  MMETSP1061-20121228|2745_1 399 VRAVYPSASSETVKVEHNPDLVSIEEIRKVLAE 431
                 666667778899**************9987765 PP

>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   1.1         2   4.1e+03      75      78 ..      51      54 ..      42      63 .. 0.39
   2 ?   -2.8   1.5         1   2.1e+03      69      82 ..     117     130 ..     107     142 .. 0.53
   3 !   16.7   0.0   8.1e-07    0.0017      31      88 ..     245     302 ..     224     306 .. 0.88

  Alignments for each domain:
  == domain 1    score: -5.0 bits;  conditional E-value: 2
   TIGR02052 75 kalt 78
                 a t
  MMETSP1061-20121228|2745_1 51 TATT 54
                1111 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1
   TIGR02052  69 dektnvkaltkatk 82 
                 ++ktn k+ tk+ +
  MMETSP1061-20121228|2745_1 117 NTKTNTKTKTKTNT 130
                 34444444444332 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 8.1e-07
   TIGR02052  31 gmtcaacPitvktalkkvdGvekaevsfkqklavvtfddektnvkaltkatkdaGyPs 88 
                 g+ ca+    +++ lk ++Gv+ ++++  +k + v +d +  ++  l+++ +d G+P+
  MMETSP1061-20121228|2745_1 245 GICCASEIPVIRRILKPLEGVDTVNLNLTTKVVHVQHDYHTIDASRLAQTLTDQGFPA 302
                 5666665556899********************************************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 1622.08
//
Query:       MMETSP1061-20121228|2736_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-05   19.9   0.0    0.00019   18.8   0.0    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   4.7e-08   0.00019      73     138 ..     226     292 ..     202     371 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.7e-08
   TIGR03724  73 kivmeyiegkklkdlleekel.ellkevGelvgklHkagivhgDlttsNiivkddklyliDfGLgkk 138
                  +vme ++ +  k + +  e  +l++++ e++   H+ +++h Dl+ sN+ ++++++ l D  ++++
  MMETSP1061-20121228|2736_1 226 FLVMECLDTEASKGAETVPEIrKLIRSLLETMQFAHSRNVMHRDLHNSNYFWDGERVSLFDWNMAEV 292
                 578888877776655554444599999999**********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1604.71
//
Query:       MMETSP1061-20121228|2749_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.077   10.9   2.4      0.081   10.8   0.0    2.3  2  TIGR01495 ETRAMP: early transcribed membrane protein (ETRAMP) family


Domain annotation for each model (and alignments):
>> TIGR01495  ETRAMP: early transcribed membrane protein (ETRAMP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     2e-05     0.081       8      60 ..       3      57 ..       1      64 [. 0.82
   2 ?   -3.4   1.0      0.53   2.2e+03      22      34 ..     166     178 ..     161     186 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2e-05
   TIGR01495  8 yllaillainliapglcnngkvekkgkilkklekaekkk..rnkklilySsiasg 60
                ++ a+l ++ l++p +c  g+v +  k+ +kl  + ++    n +  +yS ia +
  MMETSP1061-20121228|2749_1  3 LFTAALTIVALVSPAVCFDGSVRADSKLGQKLMGKARQLnnNNNNNYYYSWIADA 57
                5889**********************99888766665554577888899988765 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.53
   TIGR01495  22 glcnngkvekkgk 34 
                 +++nng++++ ++
  MMETSP1061-20121228|2749_1 166 YNYNNGQNNNNNN 178
                 6677777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1595.52
//
Query:       MMETSP1061-20121228|2751_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-06   24.3   0.0    0.00061   16.8   0.0    2.8  3  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.5e-07   0.00061      38     146 ..     206     332 ..     196     367 .. 0.76
   2 ?   -1.5   0.0     0.053   2.2e+02     198     217 ..     398     417 ..     387     431 .. 0.86
   3 !    4.1   0.0    0.0011       4.4     253     296 ..     435     478 ..     424     487 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.5e-07
   TIGR01293  38 klayes.ginlfdiaevyaagkaetelgkilk....k........kgwrrssyvittki.fwggkaeeerglsrkhiieglkaslerlqleyvdivlanradpssp....meevvramtyvinqgla 146
                 + a+e+ gi l+d+a  y  g +e ++g  l     +        k   r  + + tki  + +  +++  +sr   +e+ + sl r++  y+d++ ++ ++ s      ++e++ am     +g+ 
  MMETSP1061-20121228|2751_1 206 HYAIEQcGISLLDTAPWYGHGTSEIVVGWALDellsRptgesgdsKPIARNDLCVNTKIgRYEADPSQQFDFSRTATLESAQRSLRRMKCGYIDVLQLHDPEFSPTldilLKETIPAMVECRANGWC 332
                 44555439*****************999766422222322222225567999*******54667889999**************************9998875443112246778888777777775 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.053
   TIGR01293 198 hkigvgavtwsplalalvds 217
                 ++ g+g+++ +pl+++l + 
  MMETSP1061-20121228|2751_1 398 QQNGMGLLAAAPLSMGLLTH 417
                 5679************9875 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.0011
   TIGR01293 253 lkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlme 296
                  ++ a + ++l   +a la+ +++ + g+ + +lg+ + eq+++
  MMETSP1061-20121228|2751_1 435 CRKAAEVCRELDVDIATLALLFAMSHPGIPCTILGMKDVEQVQR 478
                 566778899999*****************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 2051.18
//
Query:       MMETSP1061-20121228|2753_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 447.30
//
Query:       MMETSP1061-20121228|2754_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   15.6   0.1     0.0053   14.9   0.1    1.2  1  TIGR02862 spore_BofA: pro-sigmaK processing inhibitor BofA


Domain annotation for each model (and alignments):
>> TIGR02862  spore_BofA: pro-sigmaK processing inhibitor BofA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.3e-06    0.0053       8      63 ..      10      65 ..       7      68 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.3e-06
   TIGR02862  8 lalvilllivgvlvkplrligklaiklvigallLfilNvfggafglhipiNlvTal 63
                ++l +++l +++++++   + + +i ++ig +lL i+ v  gaf  h ++  +T++
  MMETSP1061-20121228|2754_1 10 IGLALIFLSLQAISRSQNKMYRYTIASIIGYVLLTIMAVPSGAFIAHRGLSSTTSI 65
                68999***************************************999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1215.90
//
Query:       MMETSP1061-20121228|2755_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1645.15
//
Query:       MMETSP1061-20121228|2756_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-31  106.3   0.1    3.9e-31  106.0   0.1    1.0  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB


Domain annotation for each model (and alignments):
>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.0   0.1   9.5e-35   3.9e-31     679     824 ..       8     165 ..       4     166 .. 0.90

  Alignments for each domain:
  == domain 1    score: 106.0 bits;  conditional E-value: 9.5e-35
   TIGR01970 679 eWLePylagvsslkaldeldlldalknllpWelqqkldellParlevptGseiairYeedke.............pvlavrlqelfGlaesPrva..qGrvkltleLLsPaqrPlqvtkDLasfWkgaykevkkemkGrYPkhvWPDDPanaaatkrakkr 824
                 e +eP l  v+slk+l+    +++l ++l  e+q+ lde  P  +++p Gs++ +rY  + e             p+ + +lq  fG +e+ rv     +++ltl+L+sPa + l+ t DL+ fWk  y  ++ em+G+YPkh WP+DP++a at+++kk+
  MMETSP1061-20121228|2756_1   8 ELVEPWLGSVKSLKELKT---VNILLSTLTPERQRYLDEYYPVFVNAPDGSKVPVRYVRHDEtshgddtvgtscrPLATAKLQQFFGAQETLRVGpsGTTIPLTLSLVSPAGKLLAETGDLPFFWKEVYPSIRSEMRGKYPKHPWPEDPLVAIATRKTKKQ 165
                 566788877777666665...5678899999**************************8876678999***************************6324579**********************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1018.96
//
Query:       MMETSP1061-20121228|2752_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1158.10
//
Query:       MMETSP1061-20121228|2762_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2824.57
//
Query:       MMETSP1061-20121228|2760_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.45
# Mc/sec: 1281.76
//
Query:       MMETSP1061-20121228|2765_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    6.3   5.5       0.46    5.8   3.8    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   3.8   0.00011      0.46     966    1009 ..      72     111 ..      56     129 .. 0.45

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00011
   TIGR00927  966 dgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeeneeplsl 1009
                  +g+++ d G  +   ++     ++e ee e e+e+e++e+ l +
  MMETSP1061-20121228|2765_1   72 EGDDDYDNGRQKPRHND----SDNEAEEGEAEDEDEDEEQVLRM 111 
                  22333333332222222....22223333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 774.72
//
Query:       MMETSP1061-20121228|2767_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.31
# Mc/sec: 285.27
//
Query:       MMETSP1061-20121228|2766_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-67  223.5   0.0    8.3e-67  223.3   0.0    1.0  1  TIGR01048 lysA: diaminopimelate decarboxylase
    5.1e-34  115.8   0.0    6.9e-34  115.4   0.0    1.1  1  TIGR03099 dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated
    2.8e-11   40.3   0.0    3.5e-11   40.0   0.0    1.1  1  TIGR01047 nspC: carboxynorspermidine decarboxylase


Domain annotation for each model (and alignments):
>> TIGR01048  lysA: diaminopimelate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.3   0.0   6.1e-70   8.3e-67       6     416 ..      45     474 ..      40     475 .. 0.87

  Alignments for each domain:
  == domain 1    score: 223.3 bits;  conditional E-value: 6.1e-70
   TIGR01048   6 dgeleiegvdlkelaeefgtPlYvydeetlrerlealkeafkaeeslvlYAvKAnsnlavlrllaeeGlgldvvsgGEleralaAgvkaekivfsgngkseeeleaaleleiklinvdsveelelleeiakelgkkarvllRvnpdvd.....aktheyisT..GlkesKFGieve.eaeeayelalkleslelvGihvHIGSqildlepfveaaekvvklleelkeegieleeldlGGGlgisyeeeeeapdleeyaeklleklekea.elglklklilEpGRslvanagvlltrVesvKeves...rkfvlvDagmndliRpalYeayheiaalkr.....leeeetetvdvvGplCEsgDvlakd.........relpeveeGdllavasaGAYgasmss.nYnsrprpaevlve.egkarlirrretledllale 416
                 ++++++++  +k+ ++  g+P++ y+ e+l+e + a  ++ +a+  +v YA+KA+ n a+l++++++G+ +d+ sg E++ra+ Ag++ae+i +s +    e++++ +++++k in+ sv+++e++ +  +++g  ++v +Rvnp+ +      +t+ + +T  G   s FGi+++  +  ++  ++++  l++  ih+HIGS+  d +  +++a+k +++++ +      +e+l+lGGG  +   e e + dl+++ e ++ ++++ a e g++lkl +EpG +lva +g l+ +++    +     ++f   D+gm+d++Rp+lY+a h ++ l +         ete v vvG +CEsgD+++ +         r+l ++e Gdll++  +GAY+a ms  nYns p + ev+v+ +gk ++ir+r+ le++ ++e
  MMETSP1061-20121228|2766_1  45 ETSVFLTAETAKACVDLAGSPTFAYSLEKLQESADACLAFPNAYGLTVRYAMKACPNSAILKFFSSKGIHIDASSGFEVKRAMDAGIPAEHISLSTQEL-PENFADLIKMGVK-INACSVSQVERIGKAFEGTG--QKVGIRVNPGTGsggfsSSTSGFSKTnvGGPASSFGIWYAlIEDGTVPDIVAKYGLTVERIHTHIGSGS-DPAVWQQVASKSLSFCKVW----SAVETLNLGGGYKVGRVEGEVTTDLQKIGEPVTGAFRQFAeENGRELKLEIEPGTYLVAMSGALVSTIQDKVITTGddgHTFLKLDSGMTDVLRPSLYGAIHPMTILPAsgksdDIGSETEDVIVVGHCCESGDLMTPKpgepedlaeRTLRKAEIGDLLVMDGSGAYCAGMSTkNYNSFPEAPEVMVDfDGKPHIIRKRQPLEEIYKNE 474
                 67789999999999********************999988888888************************************************99876.57899*******9.*************9998885..67899****8651111156776555433999*********766777888999999************95.6666777777777777775....889***********************************9989999********************999864433324569**********************9877755333222234689999*************99999999**9************************9648************94569*************9987 PP

>> TIGR03099  dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.0   5.1e-37   6.9e-34      22     398 .]      61     452 ..      44     452 .. 0.81

  Alignments for each domain:
  == domain 1    score: 115.4 bits;  conditional E-value: 5.1e-37
   TIGR03099  22 vgttPfyaydrklikervaalrkalpe..elalhyalkanPmaaLlahlaelvdGlDvasagelklaldtGvdpekisfaGPGktdaeleaaiaagvllnveslrelarvaalaeklglrarvavrvnPd.....felkssgl...kmgGgakqfGiDaeqvpe..vlakikaadldfkGlhifaGsqaLkaeaiieaqaktlalalelakeapapvrvlniGGGfGvpyfegeeeldlakvadalaalleklkeal.pevelileLGryLvaeaGiyvckvvdrkvsr...gekflvtdGGlhhhlaasGnlGqvirkny.pvaignrlkeaereevsivGpLCtPLDlladk.........velpkaeaGDlvvifqsGayGasasPkafLgqpeavelLv 398
                 ++++P +ay+ ++++e   a   a+p+   l+++ya+ka P+ a+l+ ++++   +D++s  e+k+a+d+G+++e+is++      ++++  i+ gv +n  s+++++r+ ++ e +g   +v +rvnP      f   +sg+    +gG a+ fGi    + +  v + +++++l  + +h + Gs +  + a+ +  a   +  l++  +  + v++ln+GGG+ v  +ege   dl+k+++ ++  + +++e+  +e +l +e G yLva +G  v+++ d+ ++    g++fl +d G+   l  s  +G +      p+   +   ++e+e v +vG  C   Dl++ k          +l kae GDl+v+  sGay a  s k++ + pea e++v
  MMETSP1061-20121228|2766_1  61 LAGSPTFAYSLEKLQESADAC-LAFPNayGLTVRYAMKACPNSAILKFFSSKGIHIDASSGFEVKRAMDAGIPAEHISLSTQ-ELPENFADLIKMGVKINACSVSQVERIGKAFEGTG--QKVGIRVNPGtgsggFSSSTSGFsktNVGGPASSFGIWYALIEDgtVPDIVAKYGLTVERIHTHIGSGS--DPAVWQQVA---SKSLSFC-KVWSAVETLNLGGGYKVGRVEGEVTTDLQKIGEPVTGAFRQFAEENgRELKLEIEPGTYLVAMSGALVSTIQDKVITTgddGHTFLKLDSGMTDVLRPS-LYGAIHPMTIlPASGKSDDIGSETEDVIVVGHCCESGDLMTPKpgepedlaeRTLRKAEIGDLLVMDGSGAYCAGMSTKNYNSFPEAPEVMV 452
                 4456**********9987665.4566523699********************999************************875.67889999********************9988666..5799*****7333335666777533368999******98888642144556667************986..444544333...3333444.345789*********************************998877669*************************9997522269***********99887.46776655541444444455789999*************98542222222225799*********************************987 PP

>> TIGR01047  nspC: carboxynorspermidine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   2.5e-14   3.5e-11       3     318 ..      64     401 ..      62     446 .. 0.78

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 2.5e-14
   TIGR01047   3 tPafvleeeklrknleilesvkeksgvkvllalkgfalwsvfkilreylkGatasglyeaklakee.fgkevhvyspaykeedlkeileladkivfnslaqyakyrekvedknsevklGlrinpe.....ysevekdl..ynPaskvsrlGvqakelee........slldgieGllfhtlCekdad.alertlevvekkfgeylekleWvnlGGGhlltkeg....ydveklia....vikefkerya..vqvilePGeaigwqtgflvasvvdivenekeiaildvsveahmpdtlempyrpevleasvkadeeleeveekegefs.yllggstClaGdvlg 318
                 +P+f    ekl++ ++      +  g  v  a+k+   ++++k+  ++     as+ +e+k a++  +  e    s+   +e++ +++++  ki   s++q ++  +  e+  +  k+G+r+np+     +s  ++ +   n  +  s +G+  + +e+        +   ++e    ht+  + +d a+ + +   +  f +    +e +nlGGG+ + + +     d++k+++    + ++f+e  +  +++ +ePG  ++  +g lv+++ d v +  +        ++ m d+l       +   ++ + + +   ++  +e++  ++ g  C +Gd+++
  MMETSP1061-20121228|2766_1  64 SPTFAYSLEKLQESADACLAFPNAYGLTVRYAMKACPNSAILKFFSSKGIHIDASSGFEVKRAMDAgIPAEHISLSTQELPENFADLIKMGVKINACSVSQVERIGKAFEGTGQ--KVGIRVNPGtgsggFSSSTSGFskTNVGGPASSFGIWYALIEDgtvpdivaKYGLTVER--IHTHIGSGSDpAVWQQVASKSLSFCKVWSAVETLNLGGGYKVGRVEgevtTDLQKIGEpvtgAFRQFAEENGreLKLEIEPGTYLVAMSGALVSTIQDKVITTGDDGHTFLKLDSGMTDVLRPSLYGAIHPMTILPASGK--SDDIGSETEdVIVVGHCCESGDLMT 401
                 799999999999999999999**************************9888999999******98636788888999999*****************************88888..*******96333336666655422799999***********996554442222223444..46665543332677777888999******************9986512225666665522124567888887679999********************777655555555567788999998888888888877755444..3444444441456788899999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.56
# Mc/sec: 1116.12
//
Query:       MMETSP1061-20121228|2771_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-36  122.3   0.0    4.3e-20   69.0   0.0    2.1  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.1e-14   52.2   0.6    1.4e-07   29.0   0.0    2.5  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   4.5e-18   9.2e-15       2     185 ..      58     231 ..      57     295 .. 0.89
   2 !   69.0   0.0   2.1e-23   4.3e-20       6     185 ..     409     575 ..     405     588 .. 0.87

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 4.5e-18
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLsh.PnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtG 185
                 t ++ a+k++     +e   +  F Rei++ + L    n+v+L+D    ++   + v  y +G  + ++L    + +  +  +L +  + ++   h++ + hRD+kP+n+++  + ++s+  v DFG +  +p+ +       t      G+Pa+ aPe L g p  ++ D+++ G ++   + G
  MMETSP1061-20121228|2771_1  58 TYEEFAVKVIDRTRLKERDDRSTF-REINIMKDLMDlENVVRLIDVYIIPE-TFYIVQFYAKGGDVFDRLGKRVSYSEMDARALSVILIKTMRDLHKRNICHRDMKPENLLLKSSHDDSTILVADFGFAKYVPDEGL-----KT----RCGTPAFVAPEILVGKPYNTQVDMWSVGCLIYMIIAG 231
                 778899999988877777777888.69999998875389*******99988.7788888**************************************************************************9776.....23....36*************************9776555555 PP

  == domain 2    score: 69.0 bits;  conditional E-value: 2.1e-23
   TIGR03903   6 vaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtG 185
                  a+k+++ + +e+  +v     e+++ ++L+h n+va++D  e ed   + v e+++G  l +++ +    + ++   L    L+a+   h++G+vhRD+kPqn+++  +d +   kv DFG +  +   +      lt      G+P+Y aPe L++ p     D+++ G+++   L G
  MMETSP1061-20121228|2771_1 409 FAVKIIKRN-PEKDEQV---LHEVNIMNQLRHENLVAVVDFFEEED-CFYIVMELMAGGDLFDRIIQLHNYTEKDARDLAKILLEAVDYMHKNGIVHRDIKPQNLLLESKDSNCAIKVGDFGFAKRVYTPK-----SLTM---RCGTPSYVAPEILKNQPYDQSCDMWSVGVLLYVMLCG 575
                 567777666.4444333...479******************99888.99*************************************************************************986554433.....3554...47**************************988776666 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1     2e-08     4e-05      19     138 ..      48     186 ..      37     215 .. 0.73
   2 !   29.0   0.0   6.8e-11   1.4e-07      43     138 ..     423     529 ..     387     564 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 2e-08
   TIGR03724  19 kavvKeRvkKsYrh...pelDeklrkeR....trkEarllseakkagvntPvv.ydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkk 138
                  +v+ +R kK Y +   + +D+   keR    t +E+++++++ +    + ++ + + pe++ iv  y +g ++ d l ++          l   + +++  lHk +i+h D+ ++N+++k    d+++++ DfG +k+
  MMETSP1061-20121228|2771_1  48 GVVYTTRHKKTYEEfavKVIDRTRLKERddrsTFREINIMKDLMDLENVVRLIdVYIIPETFYIVQFYAKGGDVFDRLGKRVSysemdarALSVILIKTMRDLHKRNICHRDMKPENLLLKsshdDSTILVADFGFAKY 186
                 578888999988753337788766566544456789999999888763333322334577788999999998888877775545665664455555677889******************656645556667****998 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 6.8e-11
   TIGR03724  43 RtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk.ddklyli...DfGLgkk 138
                  + +E++++++++++ + + v ++ +++ + ivme + g +l d + + ++       +l+k + e+v  +Hk+givh D+ ++N++++ +d+ + i   DfG +k+
  MMETSP1061-20121228|2771_1 423 QVLHEVNIMNQLRHENLVAVVDFFEEEDCFYIVMELMAGGDLFDRIIQLHNytekdarDLAKILLEAVDYMHKNGIVHRDIKPQNLLLEsKDSNCAIkvgDFGFAKR 529
                 566899********9988877777788889*******9998877665544446766778888899999********************5355566665558888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.49
# Mc/sec: 1901.72
//
Query:       MMETSP1061-20121228|2778_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0079   14.4   1.2        1.3    7.4   0.0    2.1  2  TIGR03976 chp_LLNDYxLRE: His-Xaa-Ser system protein HsxD
  ------ inclusion threshold ------
      0.078    9.8   6.5      0.081    9.8   4.5    1.0  1  TIGR03362 VI_chp_7: type VI secretion-associated protein, VC_A0119 family
       0.15    9.1   3.4       0.16    8.9   2.4    1.1  1  TIGR02974 phageshock_pspF: psp operon transcriptional activator
        1.3    7.4   5.6       0.83    8.0   1.1    2.0  2  TIGR03894 chp_P_marinus_1: conserved hypothetical protein, TIGR03894 family
          2    6.9  11.3        4.1    5.9   3.9    2.1  2  TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR03976  chp_LLNDYxLRE: His-Xaa-Ser system protein HsxD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.2    0.0033       2.7      47      71 ..       7      30 ..       2      34 .. 0.75
   2 !    7.4   0.0    0.0015       1.3      39      67 ..      54      82 ..      40      90 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0033
   TIGR03976 47 dleevekeFeneLiDqklReqieke 71
                +++e  +eFe+ +i  ++Re  eke
  MMETSP1061-20121228|2778_1  7 NDDE-DEEFERAMIEAAIREADEKE 30
                3444.479************87776 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0015
   TIGR03976 39 akee.eekedleevekeFeneLiDqklReq 67
                ak++  + ++++e  +eFe+ +i  ++Re 
  MMETSP1061-20121228|2778_1 54 AKPKaASITNDDE-DEEFERAMIEAAIREA 82
                4555555566666.689***********95 PP

>> TIGR03362  VI_chp_7: type VI secretion-associated protein, VC_A0119 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   4.5   9.8e-05     0.081     169     240 ..      19      91 ..       2      93 .] 0.67

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 9.8e-05
   TIGR03362 169 ealkarlteakneaapaaapaapasakapassasasaapep.vasveaassseralrdallqvaelLaeqkpd 240
                  + + r + +k++ + a++ +  a+a+a+as++ a+++++  +++++ + ++era+ +a+   a++L +q ++
  MMETSP1061-20121228|2778_1  19 IEAAIREADEKERQQSAGSGSDDANASASASAKPAAKPKAAsITNDDEDEEFERAMIEAAIREADALERQAAE 91 
                 22233334566666666666666666666666666644443689***********************999876 PP

>> TIGR02974  phageshock_pspF: psp operon transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   2.4    0.0002      0.16     250     321 ..      24      92 ..       3      93 .] 0.56

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0002
   TIGR02974 250 spwrkkkeaeaeeeaeeeeaeeeakkesaesssvaeaslpldlkeaveelekellekaLeeakfnqrkaael 321
                  +   ++e+e++++a + + + +a+++++++ +++ ++ ++   +  ee+e+ ++e+a++ea   +r+aae+
  MMETSP1061-20121228|2778_1  24 RE---ADEKERQQSAGSGSDDANASASASAKPAAKPKAASITNDDEDEEFERAMIEAAIREADALERQAAEA 92 
                 22...22222222222222222222222223444444555557788999*********************96 PP

>> TIGR03894  chp_P_marinus_1: conserved hypothetical protein, TIGR03894 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.1     0.001      0.83      39      82 ..       6      50 ..       2      59 .. 0.70
   2 ?    1.5   0.1      0.11        91      38      64 ..      61      87 ..      56      92 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.001
   TIGR03894 39 tiGdlsdqleaamvvgviaeqepddeenegee.ketkeesesese 82
                t  d  ++ e am+ + i e ++++ ++   + +++ + s s s 
  MMETSP1061-20121228|2778_1  6 TNDDEDEEFERAMIEAAIREADEKERQQSAGSgSDDANASASASA 50
                5567778999*********99999988877773555555554444 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.11
   TIGR03894 38 ltiGdlsdqleaamvvgviaeqepdde 64
                +t  d  ++ e am+ + i e +  + 
  MMETSP1061-20121228|2778_1 61 ITNDDEDEEFERAMIEAAIREADALER 87
                455566778889999999988877665 PP

>> TIGR01195  oadG_fam: sodium pump decarboxylases, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2      0.01       8.4      56      80 ..       2      27 ..       1      34 [. 0.74
   2 ?    5.9   3.9     0.005       4.1      45      79 ..      49      82 ..      29      87 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.01
   TIGR01195 56 aAvaavedeed.elvaaiaAAvhehk 80
                aA + ++de++  + a i AA+ e  
  MMETSP1061-20121228|2778_1  2 AASITNDDEDEeFERAMIEAAIREAD 27
                67777788887568899*****8765 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.005
   TIGR01195 45 eakaakek..aaaaAvaavedeed.elvaaiaAAvheh 79
                 ak    +  + +aA + ++de++  + a i AA+ e 
  MMETSP1061-20121228|2778_1 49 SAK----PaaKPKAASITNDDEDEeFERAMIEAAIREA 82
                222....23212345555788887567899*****875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|2779_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.09s 00:00:00.18 Elapsed: 00:00:00.18
# Mc/sec: 381.30
//
Query:       MMETSP1061-20121228|2782_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 503.96
//
Query:       MMETSP1061-20121228|2781_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 1375.47
//
Query:       MMETSP1061-20121228|2790_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|2788_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29    7.6   4.9       0.27    7.7   3.4    1.2  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   3.4   6.6e-05      0.27     190     238 ..      38      84 ..       3      95 .] 0.53

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 6.6e-05
   TIGR01651 190 vrellas..lelaeelgddeesedeedtdddqpredeqeeegeeeeegdea 238
                 + ++++s  l l +e +dd++s++++++d ++    ++++  ++++++d++
  MMETSP1061-20121228|2788_1  38 IINMMSSalLRLGDEHTDDSNSNNNNNNDSND----NDNDTENNDNDNDDQ 84 
                 55555442234455555554444443333332....222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 391.84
//
Query:       MMETSP1061-20121228|2794_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.25
# Mc/sec: 258.70
//
Query:       MMETSP1061-20121228|2787_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 1365.93
//
Query:       MMETSP1061-20121228|2798_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 191.98
//
Query:       MMETSP1061-20121228|2799_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.34
# Mc/sec: 582.30
//
Query:       MMETSP1061-20121228|2791_1  [L=962]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (962 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 3431.72
//
Query:       MMETSP1061-20121228|2800_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 1399.08
//
Query:       MMETSP1061-20121228|2795_1  [L=923]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (923 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.46
# Mc/sec: 2648.39
//
Query:       MMETSP1061-20121228|2805_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.1    3.8  11.3        4.4    3.7   7.8    1.0  1  TIGR01651 CobT: cobaltochelatase, CobT subunit
        4.6    2.5   7.4        4.5    2.6   5.2    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.8    0.0021       4.4     192     234 ..      27      69 ..      15      74 .. 0.61

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0021
   TIGR01651 192 ellaslelaeelgddeesedeedtdddqpredeqeeegeeeee 234
                 ++++ le+     d++e+++++d+ddd+ ++d+++++ +++e+
  MMETSP1061-20121228|2805_1  27 QIINPLEMEGGTEDKNENDKDDDDDDDKDNDDDNDNDNDDNES 69 
                 5677777777666666665555555555555444444444443 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   5.2    0.0022       4.5     962     994 ..      35      67 ..      10      74 .. 0.42

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0022
   TIGR00927 962 ekGvdgeggsdGGdseeeeeeeeeeeeeeeeee 994
                 e G ++++++d  d ++++++++++++++++++
  MMETSP1061-20121228|2805_1  35 EGGTEDKNENDKDDDDDDDKDNDDDNDNDNDDN 67 
                 222222222222222222222222111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 353.54
//
Query:       MMETSP1061-20121228|2807_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 569.95
//
Query:       MMETSP1061-20121228|2809_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1061-20121228|2801_1  [L=805]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.56
# Mc/sec: 1864.06
//
Query:       MMETSP1061-20121228|2804_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.19s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1525.55
//
Query:       MMETSP1061-20121228|2810_1  [L=769]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-07   25.8   0.0    1.5e-06   24.9   0.0    1.4  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    8.9e-06   23.1   0.0    0.00028   18.1   0.0    2.4  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
  ------ inclusion threshold ------
      0.014   12.0   0.1      0.021   11.4   0.0    1.2  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
       0.05   10.7   0.0      0.095    9.7   0.0    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
       0.08    9.4   0.9       0.24    7.8   0.6    1.8  1  TIGR02734 crtI_fam: phytoene desaturase


Domain annotation for each model (and alignments):
>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   1.9e-09   1.5e-06       2      44 ..     126     184 ..     125     195 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 1.9e-09
   TIGR00562   2 kkkvvvvGgGisGLciayalekerp................dvelvlvEakdRvGGkiy 44 
                 ++kv+v+G+G+sGL++ay l k+ +                 +++ ++E ++R+GG++ 
  MMETSP1061-20121228|2810_1 126 RTKVIVIGAGVSGLSVAYHLMKLANaepkmevvspssspvgHLDVEILEVRNRIGGRVE 184
                 89*******************9987888999999999999999999**********986 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   3.5e-07   0.00028       1      44 [.     129     190 ..     129     196 .. 0.92
   2 ?   -3.7   0.0       1.5   1.2e+03     339     373 ..     651     685 ..     648     692 .. 0.86
   3 ?    2.2   0.0     0.024        19     398     429 ..     724     755 ..     716     756 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3.5e-07
   TIGR03467   1 vvvvGgGlAGLaAAveLaraG..................vrvtllEarrqlGGRarsfedgs 44 
                 v+v+G+G++GL+ A +L +                    ++v++lE r+++GGR++sf+ ++
  MMETSP1061-20121228|2810_1 129 VIVIGAGVSGLSVAYHLMKLAnaepkmevvspssspvghLDVEILEVRNRIGGRVESFRLDN 190
                 89************9988777778**********************************8766 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 1.5
   TIGR03467 339 edlereeladrivaelrrllpkvaeakllkakvik 373
                 + l++ee++++ ++ lr +++ ++ ++++ +kv++
  MMETSP1061-20121228|2810_1 651 KGLSDEEIIRESLEALRLVFGSDKVPNPVVSKVTR 685
                 678999***************99999999988876 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.024
   TIGR03467 398 nlfLAGDwtatgyPATlEgAvrSGvqAAeavl 429
                  l  AG+ t+  y  T+ gA   G++ Ae+++
  MMETSP1061-20121228|2810_1 724 HLLFAGEHTSKHYHGTVHGAWETGQREAERII 755
                 5889*************************997 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.6e-05     0.021       3      22 ..     129     148 ..     127     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.6e-05
   TIGR01377   3 vivvGaGvmGsaaayqLakr 22 
                 viv+GaGv G + ay+L k 
  MMETSP1061-20121228|2810_1 129 VIVIGAGVSGLSVAYHLMKL 148
                 9****************985 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00012     0.095      22      42 ..     127     147 ..     118     166 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00012
   TIGR00292  22 sDviivGaGpsGLtaayylak 42 
                 + vi++GaG sGL+ ay l k
  MMETSP1061-20121228|2810_1 127 TKVIVIGAGVSGLSVAYHLMK 147
                 579**************9866 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.6   0.00029      0.24       1      18 [.     129     146 ..     129     189 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00029
   TIGR02734   1 avViGaGlgGLAlAirLa 18 
                 ++ViGaG++GL++A +L 
  MMETSP1061-20121228|2810_1 129 VIVIGAGVSGLSVAYHLM 146
                 69************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.41
# Mc/sec: 2475.60
//
Query:       MMETSP1061-20121228|2813_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 895.23
//
Query:       MMETSP1061-20121228|2806_1  [L=942]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (942 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.46
# Mc/sec: 2702.91
//
Query:       MMETSP1061-20121228|2812_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.088    9.5   6.7       0.15    8.7   4.6    1.3  1  TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase


Domain annotation for each model (and alignments):
>> TIGR01085  murE: UDP-N-acetylmuramyl-tripeptide synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   4.6   3.7e-05      0.15     164     264 ..     468     577 ..     430     590 .. 0.58

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 3.7e-05
   TIGR01085 164 SShaLaqgRvegvefdvavftnlsrdHLdfHgtlenYlaaKaklfkelslkk.........iavinlddelaaefakalkkaitvslkkqkadskaqdlkitssalsleg 264
                  S   +q+  ++++ ++   t+ ++ H ++H + ++Y ++ ++    l+ +          +a   + d ++  +a++ +++++ + ++q++++++q+ ++++++ + ++
  MMETSP1061-20121228|2812_1 468 VSTQQEQQQQQQLHHQLLRSTSPQQQHYEYHYSYQQYQQQQQQQQPPLYSQPpqpvvtapvTATSAAPDPASYGVAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 577
                 44555677778899999999999***************999986666555544333543333333333333333333333333333333322222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       725  (0.176743); expected 82.0 (0.02)
Passed bias filter:                      198  (0.0482691); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.18s 00:00:00.79 Elapsed: 00:00:00.63
# Mc/sec: 1246.56
//
Query:       MMETSP1061-20121228|2816_1  [L=1058]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.9e-256  849.1   0.0   1.3e-255  848.6   0.0    1.2  1  TIGR00344 alaS: alanine--tRNA ligase
    1.6e-89  299.1   0.2    1.6e-73  246.1   0.1    3.8  3  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  848.6   0.0  6.2e-259  1.3e-255       1     846 [.     117    1032 ..     117    1033 .. 0.87

  Alignments for each domain:
  == domain 1    score: 848.6 bits;  conditional E-value: 6.2e-259
   TIGR00344    1 evrqefLdfFkekgHevvksaslvprndptllltnagiaqfkdiftglvkpps.....krlvnaQkciRl....nDlenVGrtarHhTlFemlgnfsfgdYfkeeaiefawellteelgldkerlvvtvyeeDe......eayelWekegipaeriikldakdnfWelGd.GpcGPctEiyyDrvggkvgekelfedddryvEvwnlVFmqfnreadGnlkelpkkniDTGmGlERlvavlqdvptnydtdifkkliekieeitgvkyasekagemdkkkveeqsalrviaDHvravaflladGvvpsnegrgYvlRrllRralrlakk.lelkeeFlkklvetlievledlypelkekeelveeileeEeerfakTlerGlrll...ekllkklekkeldgedlfkLydtyGfPvelteelaeekglkvdiegfeklmaeqrerskeakkdls.velqeeel..........anvkkateflgYee.leveakviglf.ed..gklvdeieagqeavviLdktvfYaesGGqegDkGyli......kddakvrvedvqkangvvvhvgeleegklkvgdkvkavidekrRleikknHsatHllhaalkkvlgehvkQaGslveakklrlDfshkravtkeelkkvEdlvneqilenlqvkvelmdleeakkkgalal.fgekygekvRvvsvgd.vsvelCgGtHvenTgeiglfkIvkeegiaaGvrRieavageeaie................llkeeekkLkeladkLkkeleelakkve.................klkeelkalrkeleslkkkiakqkaeelkekaeti......eelkvlvekvdak.ekkelkeladelkekeeavvvlasveeek...vklv..aavsedvlkkkikanelikqvakviggkgggredlaqag 846 
                  +vr +f+dfFk+++H++ +s++  p ndptll+tnag++qfk+if+g+v+p+s     kr++n+QkciR+    nDle+VGr+++HhT+Femlg +sfgdYfkeeai+ aw llte+++ld++r++ t++e D+      ea++ W k  +pa+r+i ++a dnfWe+Gd GpcGPc+Ei++Dr+g++ ++ +++ dd++++E+wn+VF+q+nr++ G l +lp+k+iDTGmGlERlv++lqd+ +nydtd+f++++ekiee+++v  ++ k ge d + +++  a+r+iaDH+r++ f+ladG+vp+negrgYvlRr+lRra r++++ l+++  F++kl+++++e+++++ypel +++++++ei+ eEe++f++ l+rG + +   e+ lk+ +k+e++ge++f Lydt GfP++lte +aee gl+ d +gf ++m+eq++rs++a++  +   +++ el           nv ++ + ++Y+  +e+ a+v+ +f +d  ++  + ++ g+ ++++Ldk+ +Yae GGqe+D G l       +   +++v+dvq ++g  +h+g + eg++++g +vk  +d +rR+ i+ nHs tH+l+aal++vlg+ v+Q Gsl +++klr+Df+ k+a++ ++l+k E++++++++ +l+v  ++m+l+ea++++++++ fge y++ vRvv+vgd  s+e+CgGtHv+nT+e + f++v+e+++a+G+rRi av+ ++a +                               L++e+e l+k++                   l+++   ++k+ +++kk + +q ++ + ++++t       +e + lv +vd+  + k+ +++ + +k+    +  ++  eee+   +kl+  a v + +++ ++ka e+++   +v+gg gggr++ aq++
  MMETSP1061-20121228|2816_1  117 KVRSTFVDFFKDREHTMQPSSACAPLNDPTLLFTNAGMNQFKPIFLGQVDPNSplaslKRAANSQKCIRAggkhNDLEDVGRDTYHHTFFEMLGSWSFGDYFKEEAIDMAWILLTEVYKLDPDRIYATYFEGDDnvemdaEARDYWLKY-LPADRVIGCEAADNFWEMGDtGPCGPCSEIHFDRIGNRDASALVNADDPDVIEIWNIVFIQYNRDEKG-LAPLPQKHIDTGMGLERLVSILQDKSSNYDTDVFMPIFEKIEEFSKVGPYEGKLGEEDATLKDT--AYRAIADHIRTLSFALADGAVPNNEGRGYVLRRILRRATRYGQQiLKAEPGFFQKLIPVVVETFGEAYPELVKNQATITEIIAEEETAFSTMLDRGIKFFgdlEEELKAGGKTEVSGEKAFYLYDTLGFPLDLTELMAEEAGLSLDSKGFANEMEEQKKRSRAARQAAKsGGAPQLELiaeqtaalsdNNVLPTDDSFKYKWdVELPATVMSIFgQDgfYEGGETADVGDFVGIVLDKSSYYAEAGGQEADLGVLRlldddgNTIGSFDVRDVQSYGGYLLHTGVVGEGSFQKGAHVKCRVDYERRRLITPNHSMTHVLNAALRQVLGDTVDQRGSLCNDEKLRFDFTNKKALSAKQLRKTEEICQQIVADALPVTATTMPLKEAQDIEGVRAvFGEVYPDPVRVVQVGDdCSIEFCGGTHVSNTAEAEAFVLVEETAVAKGIRRITAVTRDAAKDaieegkkieesvsdleG--------------LNVETEGLDKQAGaarkdvdaafisatlkaDLRNRIEGVQKKANEVKKAALAQRVDIVLKNVKTRveaaieNEERTLVLSVDIGaDSKASQRVLNAVKKIAPDMAFMGLSEEEQgsgGKLLafALVPDSLVDCGLKADEWVRGTLEVCGGRGGGRPSNAQGQ 1032
                  69***************************************************999******************************************************************************************998.*******************************************************************6.89***************************************************99988887776..******************************************983567788************************************************833355565559***************************************************9999876544444444455555558778889999999*976***********755333455677999*************************99997543334689***************************************************************************************************************************988***************77**************************************998887744455555555555553..............333444444443333333333322222224455555555666666665555555544444433321111223445677788887799999999999999855555555554443111344411456788999************************999985 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   8.6e-12   1.8e-08      54     180 ..     111     241 ..      86     249 .. 0.77
   2 !   16.8   0.0   1.6e-07   0.00032     204     275 ..     317     381 ..     314     396 .. 0.87
   3 !  246.1   0.1     8e-77   1.6e-73     330     898 ..     401    1047 ..     386    1051 .. 0.75

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 8.6e-12
   TIGR03683  54 kklelkemrekflsFFekkgHtrieryPvvaRWRdDvyLtiAsiadFqPfvtsGlvkPpanPlvi......sqPsiRl....nDiDnvGrtGRHltsFemmaHhaFnsedkeiYWkdetvelckell.eelgideeei 180
                  + + +++r +f++FF++++Ht+   +  ++     ++ t+A + +F+P    G+v+P + Pl        sq +iR     nD++ vGr   H t Fem++  +F       Y+k+e++ ++  ll e  ++d+++i
  MMETSP1061-20121228|2816_1 111 VEWTTSKVRSTFVDFFKDREHTMQPSSACAPLNDPTLLFTNAGMNQFKPI-FLGQVDPNS-PLASlkraanSQKCIRAggkhNDLEDVGRDTYHHTFFEMLGSWSFGD-----YFKEEAIDMAWILLtEVYKLDPDRI 241
                 4567899**************986666666666667888**********6.57***9965.66422333349****9655559********************99974.....9999999999998856667777766 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.6e-07
   TIGR03683 204 lElAtLvFmqlkkkkegeieikgeryeeldlkivDtGYGlERlvWlsqgtPtvyda.vfgelvekllekagve 275
                 +E+  +vF+q++++        ++   +l++k +DtG GlERlv + q +   yd+ vf  + ek+ e ++v 
  MMETSP1061-20121228|2816_1 317 IEIWNIVFIQYNRD--------EKGLAPLPQKHIDTGMGLERLVSILQDKSSNYDTdVFMPIFEKIEEFSKVG 381
                 688889******99........8999****************************9769999999999988776 PP

  == domain 3    score: 246.1 bits;  conditional E-value: 8e-77
   TIGR03683  330 aivDHtrtlafmlgdgivPsnvkeGYLaRlvlRrtlrllkelgleas..lselvemqleelkkeypelkenkdlildivelEeekyretlergkrivekll.....kekkeieldelvelYdshGippeivkeiakekgaevevPdnfyslvaerhekeeeeee.............eekekeellkelpeteklfyedpkkkefeakvlevvd................nevvldktlfYpegGGqpaDtGvlkaed..kk....vevvdvqkvgdvilHk..veeeklkegeevkgeideerRlrlmrhHtatHvllaaarkvlGeHvwqagaqkdtdkarlDitHykriseeeikeiErlaneivmenkpvkvkildrneAeekyGfklyqGGvppgkeiRvveied.vdveaCgGtHlkntgeiglikilkteriqdgveRlefaageaaieaiqeledllkesaei..lkvepeqlpet.......vkr.ffeew..keqrkeieklkeklaelkieeleseaekv.gdvkv.vvekvd.............adeeelkeiaekl...aekekvvvlvsekegk.vkvv..vssgekv...kvkagelvkeiakllggkggGkeklaqgkvedkekvdealekik 898 
                  ai+DH rtl+f l+dg vP n + GY+ R +lRr+ r+ +++   ++  ++ l+   +e++ + ypel +n+ +i++i+  Ee  ++++l+rg +    l       +k+e++ ++   lYd+ G p ++ + +a+e g +++  + f + + e+++++ ++++              e++ + + +++  t+ +f + + + e  a+v+++++                  +vldk+ +Y+e+GGq+aD Gvl+  d  ++    ++v dvq +g+ +lH+  v e ++++g++vk+++d erR  ++ +H+ tHvl+aa+r+vlG+ v q g+  + +k r+D t  k +s+ ++++ E+++++iv +  pv+ ++++ +eA+   G++   G v p+  +Rvv+++d + +e CgGtH++nt e  ++ +++   +  g+ R++ ++ +aa +ai+e +++ +++++   l+ve+e l+++       v+  f++     + r++ie +++k  e+k+ +l+++   v ++vk  v  +++             ad+++ +++++++   a + + + l +e++g+  k++  + ++++    ++ka+e v+   ++ gg+ggG+++ aqg+ ++ ++vd ++++ +
  MMETSP1061-20121228|2816_1  401 AIADHIRTLSFALADGAVPNNEGRGYVLRRILRRATRYGQQILKAEPgfFQKLIPVVVETFGEAYPELVKNQATITEIIAEEETAFSTMLDRGIKFFGDLEeelkaGGKTEVSGEKAFYLYDTLGFPLDLTELMAEEAGLSLDS-KGFANEMEEQKKRSRAARQaaksggapqleliAEQTAALSDNNVLPTDDSF-KYKWDVELPATVMSIFGqdgfyeggetadvgdfVGIVLDKSSYYAEAGGQEADLGVLRLLDddGNtigsFDVRDVQSYGGYLLHTgvVGEGSFQKGAHVKCRVDYERRRLITPNHSMTHVLNAALRQVLGDTVDQRGSLCNDEKLRFDFTNKKALSAKQLRKTEEICQQIVADALPVTATTMPLKEAQDIEGVRAVFGEVYPD-PVRVVQVGDdCSIEFCGGTHVSNTAEAEAFVLVEETAVAKGIRRITAVTRDAAKDAIEEGKKIEESVSDLegLNVETEGLDKQagaarkdVDAaFISATlkADLRNRIEGVQKKANEVKKAALAQRVDIVlKNVKTrVEAAIEneertlvlsvdigADSKASQRVLNAVkkiAPDMAFMGLSEEEQGSgGKLLafALVPDSLvdcGLKADEWVRGTLEVCGGRGGGRPSNAQGQAPQCSDVDAVIAASE 1047
                  79************************************999877766689*******************************************998765554556678999*****************************9984.677777777766666555555677876544332222222233344566665.556778889******998899999998888766679********************986441222233489*************75355556*******************************************************************************************************99999885.79*****87589**********************************9988887777766665555555432255555555544111111154413333222466888888888888887777665543221333332322233000000000001144444444444331003333333333333222122220022333336779999999*9999*****************999999999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1058 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.61u 0.19s 00:00:00.80 Elapsed: 00:00:00.56
# Mc/sec: 2493.65
//
Query:       MMETSP1061-20121228|2818_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 508.16
//
Query:       MMETSP1061-20121228|2820_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 361.23
//
Query:       MMETSP1061-20121228|2819_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 638.66
//
Query:       MMETSP1061-20121228|2825_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 868.08
//
Query:       MMETSP1061-20121228|2823_1  [L=1092]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1092 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 3275.73
//
Query:       MMETSP1061-20121228|2827_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-28   96.6   1.2    8.6e-14   49.2   0.0    2.3  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
      1e-21   74.8   0.1    6.5e-13   45.8   0.0    2.1  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.1e-21   75.5   9.9    5.8e-13   46.7   0.0    2.9  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    8.7e-18   62.8   0.1    4.3e-08   30.9   0.1    2.3  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    3.7e-13   46.9   0.1    6.1e-08   29.7   0.0    2.4  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    1.1e-12   46.1   0.4    9.2e-07   26.6   0.1    2.4  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    5.9e-11   39.6  14.0    5.9e-09   33.0   9.7    2.3  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.2   1.4e-15   8.2e-13     202     272 ..      24      97 ..       7     111 .. 0.80
   2 !   49.2   0.0   1.5e-16   8.6e-14     213     299 ..     168     253 ..     152     272 .. 0.82

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.4e-15
   TIGR01622 202 aakaatelsg..dipn.siadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdae 272
                 ++ +++++    + ++    + k++vG+l  + tE++Lr  Fe FG++ +v++++D +tG  +G+ F+ F+d+ 
  MMETSP1061-20121228|2827_1  24 NTGNTHRQRNnfHNKSyNNDHAKIFVGGLSWQTTEESLRFHFEQFGPVASVDVMRDRNTGDPRGFAFVVFQDSA 97 
                 4444444443333332123467*************************************************985 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 1.5e-16
   TIGR01622 213 ipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaee.akeAleklNGlelAGReikvglasDv 299
                 +p    + k++vG++  ni  + L++iFe FG++ +  ++ D+ t rs+ +GF++F++ ++ a++A+e    l++ GR + v la   
  MMETSP1061-20121228|2827_1 168 TP-EQLHNKVFVGGIPPNIDKDGLKEIFEEFGPVVDAIVMVDQVTNRSRCFGFVTFENGSNgAQKAIE-RQPLNIQGRHVEVKLATPK 253
                 33.445689***********************************************997762555555.578*********9987654 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   1.1e-15   6.5e-13     270     375 ..      15     122 ..       2     140 .. 0.79
   2 !   26.9   0.0   5.9e-10   3.5e-07     296     380 ..     173     257 ..     159     272 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 1.1e-15
   TIGR01642 270 evsqknsdinlkavekl...vnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGi.klgdkkLnvkrAtv 375
                 ++ q+  + n ++ ++       k+  +++ k+++g+L  + +++ ++   e+FG++ + ++++d++tG  +G+aF++++ds   dl ++  +G+ ++  k++ vkrA  
  MMETSP1061-20121228|2827_1  15 QPQQQYRNTNTGNTHRQrnnFHNKSYNNDHAKIFVGGLSWQTTEESLRFHFEQFGPVASVDVMRDRNTGDPRGFAFVVFQDSATIDLVMS--EGKhEINHKIVDVKRAQA 122
                 3455555666666655544456778888999*******************************************************9987..565268889999999965 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 5.9e-10
   TIGR01642 296 edklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssv.tdlAiaaLnGiklgdkkLnvkrAtvgakqa 380
                 ++k+++g++P +++ d +ke+ e+FG++    ++ d+ t  s+ ++F+ +++ s  ++ Ai+  + +++ ++ ++vk At  a+q 
  MMETSP1061-20121228|2827_1 173 HNKVFVGGIPPNIDKDGLKEIFEEFGPVVDAIVMVDQVTNRSRCFGFVTFENGSNgAQKAIE-RQPLNIQGRHVEVKLATPKAEQR 257
                 79**************************9999999****************97752677776.46677888888888888777665 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.6   6.3       3.4     2e+03     481     509 ..       6      34 ..       1      47 [. 0.21
   2 !   31.9   1.9   2.9e-11   1.7e-08     268     338 ..      28      98 ..      12     127 .. 0.69
   3 !   46.7   0.0   9.9e-16   5.8e-13     272     369 ..     160     259 ..     152     290 .. 0.84

  Alignments for each domain:
  == domain 1    score: -4.6 bits;  conditional E-value: 3.4
   TIGR01628 481 askanqanvkaqpqaqsknqmqqvvqdnn 509
                  ++++q++ + q+q+++ n  ++  q nn
  MMETSP1061-20121228|2827_1   6 QQQQQQQPQQPQQQYRNTNTGNTHRQRNN 34 
                 11111111111111111111111111111 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 2.9e-11
   TIGR01628 268 lkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqee 338
                  ++++++ +++   ++  + ++v  l  + ++e+Lr +Fe+fG + S+ vm+d +++  +gF FV f++   
  MMETSP1061-20121228|2827_1  28 THRQRNNFHNK-SYNNDHAKIFVGGLSWQTTEESLRFHFEQFGPVASVDVMRDrNTGDPRGFAFVVFQDSAT 98 
                 33333333333.34556788*********************************8899**********86543 PP

  == domain 3    score: 46.7 bits;  conditional E-value: 9.9e-16
   TIGR01628 272 feelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqee.AnkAvtelhgkilngkPLyvalAq.rkeqRka 369
                  ++++qe   ++  + ++v  + +++d+  L+e FeefG ++ a vm+d  +++S++FGFV+f + ++ A+kA++   ++ ++g+ + v lA  + eqR++
  MMETSP1061-20121228|2827_1 160 HHNQQQELTPEQLHNKVFVGGIPPNIDKDGLKEIFEEFGPVVDAIVMVDqVTNRSRCFGFVTFENGSNgAQKAIERQPLN-IQGRHVEVKLATpKAEQRRM 259
                 45667776667777889********************************55899*********99754399999887776.57888999999735577775 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.1   7.4e-11   4.3e-08     228     318 ..       7      94 ..       1     121 [. 0.64
   2 !   30.0   0.0   1.4e-10   8.3e-08      91     149 ..     175     234 ..     169     301 .. 0.90

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 7.4e-11
   TIGR01661 228 krlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmt 318
                 +++qq++  +q+  +++    ++ + + +  + + ++ +     ifv  ls +t e  l   f +fG v sv ++rd +t   +G++fv   
  MMETSP1061-20121228|2827_1   7 QQQQQQPQQPQQQYRNTNTGNTHRQRNNF--H-NKSY-NNDHAKIFVGGLSWQTTEESLrFHFEQFGPVASVDVMRDRNTGDPRGFAFVVFQ 94 
                 22222222222222222222233333333..3.3333.334568*******98877777367***************************875 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.4e-10
   TIGR01661  91 nlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkr.eeadraik 149
                  ++v G+P ++ ++ l ++f++fG ++ + +++d+vt+ s+  Gf+ f++  + a++ai 
  MMETSP1061-20121228|2827_1 175 KVFVGGIPPNIDKDGLKEIFEEFGPVVDAIVMVDQVTNRSRCFGFVTFENGsNGAQKAIE 234
                 589*********************************************986145788885 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.5e-06    0.0021      59     108 ..      45      95 ..      35     111 .. 0.90
   2 !   29.7   0.0     1e-10   6.1e-08      37     118 ..     148     235 ..     142     251 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.5e-06
   TIGR01648  59 cevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcn 108
                 + +fvG +     e+ l   fe+ G++  + +m d   G+ rG+afv+f +
  MMETSP1061-20121228|2827_1  45 AKIFVGGLSWQTTEESLRFHFEQFGPVASVDVMRDrNTGDPRGFAFVVFQD 95 
                 689********************************888***********76 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1e-10
   TIGR01648  37 enGqrkyGGPPPgyegaq...P.erGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnk.eeakeavke 118
                 + G  k+GG P  ++  q   P +    vfvG iP ++  d l  +fe+ G++ +  +m+d +  + r + fvtf n  + a++a+ +
  MMETSP1061-20121228|2827_1 148 DHGGNKHGGNPQHHNQQQeltPeQLHNKVFVGGIPPNIDKDGLKEIFEEFGPVVDAIVMVDqVTNRSRCFGFVTFENGsNGAQKAIER 235
                 578899***9998654432225256889*********************************9999**********8751569999964 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   1.6e-09   9.2e-07     194     313 ..      45     161 ..      21     176 .. 0.74
   2 !   17.8   0.0   7.7e-07   0.00045     195     253 ..     175     234 ..     164     280 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.6e-09
   TIGR01659 194 tnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeehgkakaahymsklglikygeygtgnggvaggsaanlpqp 313
                 + ++v  l+   t++ l   f ++g +   +++rd+ tg prg afv f+     +  +s       e   + + v+ a+  g+a    ++ +  + + g++ + n  ++   ++n+++ 
  MMETSP1061-20121228|2827_1  45 AKIFVGGLSWQTTEESLRFHFEQFGPVASVDVMRDRNTGDPRGFAFVVFQDSATIDLVMSEGKH---EINHKIVDVKRAQARGQAPPSIHVGDGNQHQSGSGNSSNDHGGNKHGGNPQHH 161
                 568999*******************************************887666655555444...44556778888888888888887775554444444444433333333333333 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 7.7e-07
   TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrf.nkreeaqeais 253
                  ++v  +p  i  d l+ if  +g +v+  ++ d+ t + r   fv f n  + aq+ai 
  MMETSP1061-20121228|2827_1 175 KVFVGGIPPNIDKDGLKEIFEEFGPVVDAIVMVDQVTNRSRCFGFVTFeNGSNGAQKAIE 234
                 5789999999999**********************************9445678999985 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   9.7     1e-11   5.9e-09      84     259 ..       5     233 ..       1     252 [. 0.77

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 1e-11
   TIGR01645  84 ahqkqqlenqqrq.......................vqrqqalaimsrv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafveevPeaallale......qmngallGGrnlkvg......................................rPsnlpqaqpiidevqeeakkfnrivasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlq.sqseai 259
                  +q+qq+     q                          +      +++ vG +s++  e+ lr  f+ fGP+ s+++  d  t+  +gfafv    ++a + l       ++n +++                                               P+   q q++  e q + k f   v  + p++ ++ lk +fe fG++v+  +  +  +++ + fGf+ fen     ++ai
  MMETSP1061-20121228|2827_1   5 QQQQQQQ-----QpqqpqqqyrntntgnthrqrnnfH-NKSYNNDHAKIfVGGLSWQTTEESLRFHFEQFGPVASVDVMRDRNTGDPRGFAFVVF-QDSATIDLVmsegkhEINHKIVDV-----KraqargqappsihvgdgnqhqsgsgnssndhggnkhggNPQHHNQQQELTPE-QLHNKVF---VGGIPPNIDKDGLKEIFEEFGPVVDAIVMVDQVTNRSRCFGFVTFENGSnGAQKAI 233
                 2222222.....233566899*******997776532.222334457778*******************************************73.344444433000111445555544.....3555558999999999*******************999999999998887765.5556777...*********************************************99641456666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1204.82
//
Query:       MMETSP1061-20121228|2832_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|2828_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1785.98
//
Query:       MMETSP1061-20121228|2833_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00093   15.8   0.3     0.0014   15.2   0.2    1.2  1  TIGR00398 metG: methionine--tRNA ligase
  ------ inclusion threshold ------
      0.044   11.8   1.1        4.1    5.5   0.0    3.6  5  TIGR04042 MSMEG_0570_fam: MSMEG_0570 family protein


Domain annotation for each model (and alignments):
>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   6.8e-07    0.0014      68     146 ..     237     328 ..     232     351 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.8e-07
   TIGR00398  68 dklaeefkklfkllnisfdrFirTtdeehkeivqkifekllenG..yiy..ekeikglYcvecesflpdr.........yvegecpkckeed 146
                 dk+  + ++  klln +fd++ + +d+e+ ei ++i ++l++ G  +++   k+ +++Y  ++e++l+            ++ + +k+ +++
  MMETSP1061-20121228|2833_1 237 DKTWPKQREFRKLLNKHFDNYDKAKDKEKGEIQEEILHQLWDTGarFMRrdRKQKNKWYEERDERYLKRDiigtrfrdmRKKRKTEKIPKNS 328
                 6666777888899******************************94444411467789**********9887777777663333333333333 PP

>> TIGR04042  MSMEG_0570_fam: MSMEG_0570 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.42   8.5e+02      41      56 ..      35      50 ..      19      62 .. 0.78
   2 ?   -1.2   0.1      0.24   4.9e+02      40      62 ..      59      81 ..      44     109 .. 0.64
   3 ?   -0.8   0.0      0.18   3.8e+02      39      67 ..     108     136 ..      96     141 .. 0.73
   4 ?    1.8   0.0     0.027        56      36      62 ..     130     156 ..     123     160 .. 0.85
   5 ?    5.5   0.0     0.002       4.1      40      62 ..     167     189 ..     161     210 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.42
   TIGR04042 41 ersreaLeeAserVra 56
                ++   +L  Aser +a
  MMETSP1061-20121228|2833_1 35 QQNGFSLWFASERMKA 50
                5556678889999887 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.24
   TIGR04042 40 versreaLeeAserVrakyGfac 62
                v++   a++ Ase  ra+  ++ 
  MMETSP1061-20121228|2833_1 59 VSQHGVAFRFASETMRAERNIVL 81
                45566677778887777665554 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.18
   TIGR04042  39 fversreaLeeAserVrakyGfacssaad 67 
                  v+++ +aL+ A+e   +k  f+  + ++
  MMETSP1061-20121228|2833_1 108 AVKQCGAALQFAAEELVEKRLFVVQAVQE 136
                 57888999999999888887776665555 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.027
   TIGR04042  36 vadfversreaLeeAserVrakyGfac 62 
                 v + v+  r aL  As+ + a  Gf++
  MMETSP1061-20121228|2833_1 130 VVQAVQENRDALCFASDEIIASKGFFS 156
                 556788999***************986 PP

  == domain 5    score: 5.5 bits;  conditional E-value: 0.002
   TIGR04042  40 versreaLeeAserVrakyGfac 62 
                 v+  r aL +As+ V a  Gf++
  MMETSP1061-20121228|2833_1 167 VQENRDALCIASDEVIASRGFFS 189
                 577899***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1280.65
//
Query:       MMETSP1061-20121228|2838_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 491.29
//
Query:       MMETSP1061-20121228|2834_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-28   97.9  13.2      3e-17   60.3   0.7    2.6  3  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    2.2e-10   38.2   7.1      6e-10   36.8   0.7    3.2  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    1.1e-07   27.9   6.1     0.0026   13.5   0.1    2.9  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    1.6e-07   28.9  10.2     0.0036   14.7   0.1    3.8  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
  ------ inclusion threshold ------
      0.014   12.8   0.1      0.032   11.7   0.0    1.6  1  TIGR03590 PseG: pseudaminic acid biosynthesis-associated protein PseG


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   2.2   5.7e-15   4.7e-12     127     214 ..       6      94 ..       3     126 .. 0.87
   2 ?   -0.9   0.0      0.13     1e+02     543     571 ..     127     155 ..     111     169 .. 0.70
   3 !   60.3   0.7   3.6e-20     3e-17     130     220 ..     190     290 ..     172     317 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 5.7e-15
   TIGR00990 127 aaklkekGnkayrnkdfdkaielyskalllked.Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadal 214
                 a ++k +Gn ++++ ++  ai+ y+ a  + +  P y+sn+aacy  l+++e++ + +   ++ d+ +vk   r a ay+ql    + +
  MMETSP1061-20121228|2834_1   6 AEAIKAEGNSFFKSGKYALAIDKYKEATAIDDKvPSYWSNMAACYEKLGKYEEMADAARSCIKADKSFVKGYFRLAVAYKQLNSLPECI 94 
                 6789**********************998865449***********************************************9876654 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.13
   TIGR00990 543 iavitlaqlllqqekvdealklferaael 571
                 +a  + aq ++q ++v  a+k ++ a+ l
  MMETSP1061-20121228|2834_1 127 VAYCGKAQEMMQNGDVAGAMKQLDFASRL 155
                 35567889999999999999887776655 PP

  == domain 3    score: 60.3 bits;  conditional E-value: 3.6e-20
   TIGR00990 130 lkekGnkayrnkdfdkaielyskalll.ke......dPv..yysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldl.tas 220
                  kekG+  y+n  f++a+  y+k +   ++      d     y+nraacy  +++++ v+ d ta le+dp+ vkal rra+a++++ +y+ al d+ t++
  MMETSP1061-20121228|2834_1 190 YKEKGDASYKNAAFEEAVRHYTKCIDQlQNegksgsDLAlkAYANRAACYKQISNFDGVISDCTAVLEVDPENVKALIRRAQAFEGVERYRFALQDVkTVL 290
                 69**********************964132111122332236******************************************************83444 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.7   7.3e-13     6e-10      19     133 ..       7     121 ..       2     124 .. 0.96
   2 ?    0.5   0.0      0.12     1e+02      88     125 ..     128     165 ..     121     176 .. 0.77
   3 ?    2.7   0.1     0.025        21      59     118 ..     236     295 ..     226     311 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 7.3e-13
   TIGR02552  19 eaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeaml 133
                 eai a +  ++++gky+ A   ++  +a+d     yw  +aac+ +l++yee ++a   + ++d++  + ++++a+ + +l+   e  kaL+  ++++ +++  + +k+++ ++ 
  MMETSP1061-20121228|2834_1   7 EAIKAEGNSFFKSGKYALAIDKYKEATAIDDKVPSYWSNMAACYEKLGKYEEMADAARSCIKADKSFVKGYFRLAVAYKQLNSLPECIKALESGLAVQSSNPDLKRMKKEITELQ 121
                 678889999****************************************************************************************************998775 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.12
   TIGR02552  88 pvyhaaecllalgekeeAlkaLklaieiaeekeeysel 125
                 ++   a+ +++ g+ + A+k L+ a ++++ +++ ++l
  MMETSP1061-20121228|2834_1 128 AYCGKAQEMMQNGDVAGAMKQLDFASRLDAGNAHIEKL 165
                 56667777888899999999999999998877766555 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.025
   TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaee 118
                 aac+++ +++++ i   ++ + +d+++ +++ ++a+ +  +++++ Al++ k+++ + ++
  MMETSP1061-20121228|2834_1 236 AACYKQISNFDGVISDCTAVLEVDPENVKALIRRAQAFEGVERYRFALQDVKTVLSMPYN 295
                 899999999999999999999999999999999999999999999999999999888665 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   3.1e-06    0.0026     579     676 ..      18     115 ..       8     122 .. 0.57
   2 !    5.0   0.2    0.0012      0.95     393     438 ..     122     167 ..     116     182 .. 0.84
   3 !   12.3   1.8     7e-06    0.0058      67     225 ..     137     295 ..     133     312 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.1e-06
   TIGR02917 579 skgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnteaqllla 676
                 ++g+ + a+   +ea ++  + p++++ ++  + + ++ ++   + ++ ++ +    + + +la +y+  +  ++ +++l+++L+ ++ n ++++++ 
  MMETSP1061-20121228|2834_1  18 KSGKYALAIDKYKEATAIDDKVPSYWSNMAACYEKLGKYEEMADAARSCIKADKSFVKGYFRLAVAYKQLNSLPECIKALESGLAVQSSNPDLKRMKK 115
                 45555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555544 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0012
   TIGR02917 393 dPenaaaktklgiskLaqGdkseaiadLetAvkldpellraellLi 438
                  +e++ a+  +++  + +Gd+  a+++L  A++ld    + e l++
  MMETSP1061-20121228|2834_1 122 RSEQVVAYCGKAQEMMQNGDVAGAMKQLDFASRLDAGNAHIEKLMA 167
                 678899999999999******************9988777777776 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 7e-06
   TIGR02917  67 leqGdaaaAekeLrkAlslgyskeqvlplLarayllqgkfqkvldelekksslddeeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaen........kldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpn 225
                 +++Gd+a+A k L+ A  l + ++ +  l+a ++ +       ++ +e k  +++ + +e++  +g+A+ ++  +eeA + + +   + +++ ++   lA  a a++        ++d++     +vL+ dp+nv+Al  +++     + +  Al++ + ++ +  n
  MMETSP1061-20121228|2834_1 137 MQNGDVAGAMKQLDFASRLDAGNAHIEKLMAVVKPK-------YEAMERKR-KASLSPVEVYKEKGDASYKNAAFEEAVRHYTKCIDQLQNEGKSGSDLALKAYANRaacykqisNFDGVISDCTAVLEVDPENVKALIRRAQAFEGVERYRFALQDVKTVLSMPYN 295
                 577888888888888888888888888777765443.......55565555.677788999**********************9988888877777777766666555566678899999**********************9999999999999999888877655 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   4.4e-06    0.0036      38      87 ..      13      62 ..       3      72 .. 0.86
   2 ?    2.1   0.0     0.032        26      53     100 ..      62     109 ..      54     111 .. 0.68
   3 !   13.4   3.4   1.1e-05    0.0092      17     177 ..     112     271 ..     102     292 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.4e-06
   TIGR02521 38 aleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAees 87
                + +++++g+++ A ++ ++A ++d k  + ++ +A  y++lg+ e+ +++
  MMETSP1061-20121228|2834_1 13 GNSFFKSGKYALAIDKYKEATAIDDKVPSYWSNMAACYEKLGKYEEMADA 62
                67899*************************************88775555 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.032
   TIGR02521  53 nlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                 +    +++d++  + +  lA++y+ql  l +  ++ + +l+++  n+d
  MMETSP1061-20121228|2834_1  62 AARSCIKADKSFVKGYFRLAVAYKQLNSLPECIKALESGLAVQSSNPD 109
                 555667777777777777888888887777777777777777776665 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 1.1e-05
   TIGR02521  17 evkesskkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelae 177
                 ++k++ ++ +r++ + ++  +a e +++gd++ A ++l+ A  ld+ +a+  + +A++  +    e+  ++    +++ +++gd+     +F  + ++y + + q+++  ++   +   ++y N + c++++ +++ + +  t  l++dp++ ++l   a+
  MMETSP1061-20121228|2834_1 112 RMKKEITELQRSEQVVAYCGKAQEMMQNGDVAGAMKQLDFASRLDAGNAHIEKLMAVVKPKYEAMERKRKASLSPVEVYKEKGDASYKNAAFEEAVRHYTKCIDQLQNEGKSG-SDLALKAYANRAACYKQISNFDGVISDCTAVLEVDPENVKALIRRAQ 271
                 56788899999999********************************************8888888888888889999999999998666777777777777777777766654.4778899*******************************999987765 PP

>> TIGR03590  PseG: pseudaminic acid biosynthesis-associated protein PseG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.9e-05     0.032     189     246 ..      85     143 ..      79     151 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.9e-05
   TIGR03590 189 kllkalaeekkklkitvvvgssnpnleelkkfvkeyekii.lledvenmaelmaeadla 246
                 k l++l e  k+l+  + v ssnp+l+++kk + e ++++  + ++ + +e+m++ d+a
  MMETSP1061-20121228|2834_1  85 KQLNSLPECIKALESGLAVQSSNPDLKRMKKEITELQRSEqVVAYCGKAQEMMQNGDVA 143
                 6678888888999999*********************9887999*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 893.68
//
Query:       MMETSP1061-20121228|2835_1  [L=855]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.4e-192  637.4   0.0   5.3e-192  637.1   0.0    1.1  1  TIGR00440 glnS: glutamine--tRNA ligase
    2.6e-92  307.9   0.0    1.5e-91  305.4   0.0    1.9  2  TIGR00463 gltX_arch: glutamine--tRNA ligase
      6e-20   69.3   0.1    1.1e-19   68.5   0.0    1.4  1  TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit
      3e-18   63.8   0.0    5.9e-18   62.8   0.0    1.5  1  TIGR00464 gltX_bact: glutamate--tRNA ligase
    3.9e-08   30.8   0.0    6.3e-08   30.1   0.0    1.3  1  TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase
      8e-07   26.9   0.0    1.4e-06   26.1   0.0    1.4  1  TIGR02222 chap_CsaA: export-related chaperone CsaA
    0.00027   17.1   0.0    0.00038   16.6   0.0    1.1  1  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00440  glnS: glutamine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  637.1   0.0  9.1e-195  5.3e-192       1     522 [.      69     637 ..      69     639 .. 0.91

  Alignments for each domain:
  == domain 1    score: 637.1 bits;  conditional E-value: 9.1e-195
   TIGR00440   1 vrtrfppepnGylhiGhaksillnfGlakeykGtcnlrfddtnpvkedveyvesikrdvewl..Gfk......wegkvryssdyfdelyalavelikkGlayvdeltaeeireyrGiledpGkaskyrdrsieenlalfekmrdGkfkeGkailrakidlaspfivmrdlvlyrikfaehhrtGdkwriypmydfthclsdalenithslctlefqdnrrlydwvldnis....ievrpaqyefsrlnlegtvlskrklaklvddkfveGwddprlptlsalrrrGvtpasirefikrlGvtkqdnvievaalesairedleenapramavldpvkvvienledeae...l..vtipnrpnkpelGerqvpftkelyidradfre...........eadkeykrlvlgkevrlrnayvikaervekdae.Gkiitifvtydaevls.kepadgrkvkgviqwvsisskypaeirlydrlfkvenpg.aeddflsvinpes.lvikegvveqsladavaek...............afqfereGyftldskest.aekvvlnrivslkdat 522
                 ++trfppepnGylh+Ghak++  nf +a+ ++Gtcn+r+ddtnp ked eyv+si +dv+w+  G+       weg vr +s yfd +y  a+ li +G ayvd l+aee+reyrG+l++pGk+s++r rs+ee l+lf+km++G+ keG+ +lrakid+asp i mrd+ lyrik+ +h++tGdkw+iypmydf+h +sd+lenithslctlef+d r  ydw +d++     i+++p+q efsrln++ tvlskrkl +lv++++v+Gwddpr+ptls++rrrGv+p+++r f++r+G++k d++i ++ale +ir ++++++ ra+ vl p+kv + n++++ e   l     p +p+  e+G+r++pf k+lyi+r+df +            + k ykrl +gk  rlr ayvi+ ++v +d e  + i + ++y +++ +   p   ++vkg+i+wv  ++  +++i  ydrlf +e+pg ++ d+l+++np+s  v+ + vve+s+a+   +                ++qfer Gyf+ld ++st  +++v+nr+v+l+d++
  MMETSP1061-20121228|2835_1  69 IKTRFPPEPNGYLHLGHAKAVSFNFAVARMFDGTCNMRMDDTNPTKEDEEYVQSILEDVKWIqsGLYdgesspWEGSVRKTSSYFDTIYDCAEALILQGDAYVDSLSAEEMREYRGTLTEPGKDSPFRTRSVEESLELFRKMKNGECKEGEHVLRAKIDMASPNINMRDPTLYRIKHESHQETGDKWCIYPMYDFSHPISDSLENITHSLCTLEFEDHRPFYDWTIDKLLstglITAQPRQIEFSRLNIQNTVLSKRKLIQLVEQNHVNGWDDPRMPTLSGMRRRGVPPSALRLFCERVGISKTDSNIAFSALEECIRLKMDDSCERAFCVLKPLKVTLTNWKGDEEgnaLeeFQSPRHPKIEEMGDRTIPFGKDLYIERSDFFDlegpegeknggRVPKGYKRLLPGKMARLRYAYVIQCDEVIRDPEtQEPIELKCSYFPDTRAgVTPEGMQRVKGIIHWVEGTTGVKCKINQYDRLFLTEEPGkESGDYLKDLNPKSlEVLEDVVVEPSVAEDALKMlkkideqsdvfasslSYQFERSGYFALD-QDSTgKDNLVFNRVVTLRDTW 637
                 68***********************************************************9553322333449*********************************************************************************************************************************************************9843344779**********************************************************************************************************99875432224679*************************9633233232222235699***********************9996615789*********986156777799*******************************66789*********5588999999999865544457899***********************.555526899***********9 PP

>> TIGR00463  gltX_arch: glutamine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.4   0.0   2.6e-94   1.5e-91      95     457 ..      70     455 ..      43     460 .. 0.88
   2 ?   -0.3   0.0       0.1        60     511     549 ..     581     619 ..     519     629 .. 0.53

  Alignments for each domain:
  == domain 1    score: 305.4 bits;  conditional E-value: 2.6e-94
   TIGR00463  95 vlrfaPnPsGplhiGharaailnqefakkYeGklilrldDtdPrrekeeaydsileDldlL..Gvk......vD.evvyqsdrielyYdYarkliedGkaYvcdcsteefrelr....nkGvackrrdrsveenLevweemlegeeeeekvvvrvktDlkhknpairDfvifriektehprtGdkykvYPlldfsvaidDhllGvthvlrgkdyidnerkqeYiyky.....lgle..lpevkhygrlkiedvraLstsskkkgikegeysGWDDprlptlralrrrGikpeairelllslGvkeadvklswkklyalnkkiidkearryffivnPvkleieg....lpek..kleekPlhpdkpevGerklilekeiyvdkDdlevle 457
                  +rf+P+P+G+lh+Gha+a+  n   a++++G   +r+dDt+P +e+ee  +sileD+ ++  G+       ++  v  +s +++++Yd a+ li +G aYv+  s ee+re r    + G++++ r rsvee+Le++++m++ge +e++ v+r+k+D+  +n  +rD+  +ri++++h+ tGdk+++YP++dfs +i D l+ +th l + ++ d  ++  Y++        gl+   p+ + + rl i++  +Ls ++  + +++++ +GWDDpr+ptl ++rrrG+ p a+r +  ++G++++d+++ +  l    +  +d + +r f +++P k+++ +     +++   + + P hp+  e+G+r + + k++y+++ d+  le
  MMETSP1061-20121228|2835_1  70 KTRFPPEPNGYLHLGHAKAVSFNFAVARMFDGTCNMRMDDTNPTKEDEEYVQSILEDVKWIqsGLYdgesspWEgSVRKTSSYFDTIYDCAEALILQGDAYVDSLSAEEMREYRgtltEPGKDSPFRTRSVEESLELFRKMKNGECKEGEHVLRAKIDMASPNINMRDPTLYRIKHESHQETGDKWCIYPMYDFSHPISDSLENITHSLCTLEFED--HRPFYDWTIdkllsTGLItaQPRQIEFSRLNIQNT-VLSKRKLIQLVEQNHVNGWDDPRMPTLSGMRRRGVPPSALRLFCERVGISKTDSNIAFSALEECIRLKMDDSCERAFCVLKPLKVTLTNwkgdEEGNalEEFQSPRHPKIEEMGDRTIPFGKDLYIERSDFFDLE 455
                 58**********************************************************95543211112222257789********************************98444456***********************************************************************************************9..88999997522222355411577788888888888.8888888899999999***********************************************************************99654322231123468***********************99986555 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.1
   TIGR00463 511 idedaeiakglvekdaskvevddvvqferfgfvrldsad 549
                 + eda ++   ++++          qfer g+  ld+  
  MMETSP1061-20121228|2835_1 581 VAEDALKMLKKIDEQSDVFASSLSYQFERSGYFALDQDS 619
                 333333332222222222233344699999999887543 PP

>> TIGR00399  metG_C_term: methionine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   1.8e-22   1.1e-19      27     137 ..     665     786 ..     641     788 .. 0.84

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 1.8e-22
   TIGR00399  27 eeekkeeitiddfekvdlrvakvkkaerveksdkLlkLklDlGee......k.rqvvsGiaeaYtpeeLvgkkvivvaNLkPaKlfGvkSeGmilaaeddgk....dlallspdkevkaGer 137
                 ++ ++++  ++d++++ +r a + +a   +++d Ll  k D G++      + r vv+G+a++   ee++gkk++ v+NLkPaK++G++S  m laa d+ +    ++ ll++ ++v +Ge 
  MMETSP1061-20121228|2835_1 665 RQIQEKKGPVEDIRRIAFRAATIIEAGPHPEADSLLVCKADCGDKtedgspEyRTVVAGLAGKIPVEEMIGKKIVAVTNLKPAKMRGIESTAMFLAASDGTEgddeKVELLNVPADVPNGEL 786
                 55666777899*******************************9853333333489*****************************************98754444459999999999999975 PP

>> TIGR00464  gltX_bact: glutamate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0     1e-20   5.9e-18       2     205 ..      69     281 ..      68     387 .. 0.80

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 1e-20
   TIGR00464   2 vrvRfAPSPTGylHiGglRtAlfnyllAkntngeFllRiEDTDkeRnieeaeeeileilkwlgie.wde.......gpylQskrldiykklikeLleegkAYrCycskEeLeklreeqkakketprYdrkcrnlee...eeiekklakgekpvvRlkipeea.evsfnDlvrgeiklenseld.dlvilksdglptYnlavvvDDllmkithviRge 205
                 +++Rf P P GylH+G +++  fn+ +A+ ++g+  +R++DT   ++ ee+ ++ile +kw+    +d         + + s  +d+   +++ L+ +g AY    s+Ee+ + r + ++  +   +  +  + +     ++++   k+ ++v+R ki+  + ++   D    +ik e+++ + d    k    p Y++   + D l +ith +   
  MMETSP1061-20121228|2835_1  69 IKTRFPPEPNGYLHLGHAKAVSFNFAVARMFDGTCNMRMDDTNPTKEDEEYVQSILEDVKWIQSGlYDGesspwegSVRKTSSYFDTIYDCAEALILQGDAYVDSLSAEEMREYRGTLTEPGKDSPFRTRSVEESLelfRKMKNGECKEGEHVLRAKIDMASpNINMRDPTLYRIKHESHQETgD----KWCIYPMYDFSHPISDSLENITHSLCTL 281
                 89***********************************************************965414546877775666778889999999************************997777666655555444333012345666778899*******976537999*********998766645....44458*****************977554 PP

>> TIGR03838  queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   1.1e-10   6.3e-08       3     107 ..      71     197 ..      69     256 .. 0.63

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1.1e-10
   TIGR03838   3 GRfAPsPtGpLHlGslvaalasyldaraaggkwlvRieDlDtpRevpgaaeeilatLeal..gle......wDeevvyQserkelYqaalerlkaaglaYpCactRkeiaaa..............e 107
                  Rf P P G LHlG + a    +  ar  +g+  +R++D  +++e +++ ++il++++++  gl       w+++v   s+  ++  +  e+l  +g aY  + + +e++++              +
  MMETSP1061-20121228|2835_1  71 TRFPPEPNGYLHLGHAKAVSFNFAVARMFDGTCNMRMDDTNPTKEDEEYVQSILEDVKWIqsGLYdgesspWEGSVRKTSSYFDTIYDCAEALILQGDAYVDSLSAEEMREYrgtltepgkdspfrT 197
                 7*********************************************************973244311112233333333333333344456777777888777777777777666555555555541 PP

>> TIGR02222  chap_CsaA: export-related chaperone CsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.5e-09   1.4e-06       2     105 ..     675     786 ..     674     788 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.5e-09
   TIGR02222   2 edfekvdlrvGriveaedfpkarkPayklkvdlGeel..G...vkkssaqitklykkeelvgrlvvavvnfppkriaglksevlvl....GvideegevvllqpdrevklGtk 105
                 ed +++ +r  +i+ea ++p+a     + k d G++   G   +++  a ++ +   ee++g+++vav n+ p ++ g++s  + l    G++ ++++v ll+   +v++G+ 
  MMETSP1061-20121228|2835_1 675 EDIRRIAFRAATIIEAGPHPEADS-LLVCKADCGDKTedGspeYRTVVAGLAGKIPVEEMIGKKIVAVTNLKPAKMRGIESTAMFLaasdGTEGDDEKVELLNVPADVPNGEL 786
                 788999****************75.577899999654333444899************************************9998333345557889************985 PP

>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   6.5e-07   0.00038      49     125 ..     685     763 ..     673     788 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.5e-07
   TIGR00472  49 GkvlevekhPnadkLkvckVdigekellqivcgaknveag..kkVvv.AlegAkLpnglkIkksklrGveSeGMlCSleE 125
                 + ++e  +hP+ad L vck d g+k + +    ++ v ag   k++v  ++g k+ + + +k++k+rG+eS  M+ ++++
  MMETSP1061-20121228|2835_1 685 ATIIEAGPHPEADSLLVCKADCGDK-TEDGSPEYRTVVAGlaGKIPVeEMIGKKIVAVTNLKPAKMRGIESTAMFLAASD 763
                 6899*******************99.8888899999999988789994599************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 3134.74
//
Query:       MMETSP1061-20121228|2841_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.35
# Mc/sec: 192.33
//
Query:       MMETSP1061-20121228|2839_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-07   27.0   0.0    9.2e-07   26.2   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.025   11.8   0.0      0.037   11.3   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   4.5e-10   9.2e-07      46     135 ..     132     215 ..      97     231 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 4.5e-10
   TIGR01983  46 kkleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadleei 135
                 ++ +  +vlDvGcG G+ +  +  +g+ v+ ++ s+++ie   l  k+  l+ +e+  ++         e+fD+v ++E lEHv+  +++
  MMETSP1061-20121228|2839_1 132 ENWTVQSVLDVGCGRGISTSWFYTHGLRVQCVEGSHDAIEQSMLPDKS--LL-VEHDFSRGPWWPG---ETFDAVWSVEFLEHVNIHNHF 215
                 5566789*********************************98776544..43.5666666666644...57*************987776 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.8e-05     0.037      55      92 ..     136     173 ..     124     217 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.8e-05
   TIGR02021  55 GkkvlDAGCGtGllsielAkrGaivkavDiseklvela 92 
                  + vlD GCG G+ +  +  +G +v+ v+ s++ +e++
  MMETSP1061-20121228|2839_1 136 VQSVLDVGCGRGISTSWFYTHGLRVQCVEGSHDAIEQS 173
                 578*************************9999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 1296.79
//
Query:       MMETSP1061-20121228|2850_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.39
# Mc/sec: 294.44
//
Query:       MMETSP1061-20121228|2844_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-09   35.9   0.0    1.6e-09   35.3   0.0    1.2  1  TIGR02065 ECX1: exosome complex exonuclease 1
    2.9e-05   20.5   0.0    4.1e-05   20.0   0.0    1.1  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
     0.0014   15.8   0.0     0.0022   15.1   0.0    1.3  1  TIGR01966 RNasePH: ribonuclease PH
  ------ inclusion threshold ------
      0.046    9.9   0.0      0.061    9.5   0.0    1.1  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR02065  ECX1: exosome complex exonuclease 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.5e-12   1.6e-09       6      56 ..      23      74 ..      18     105 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.5e-12
   TIGR02065  6 dglredGrkpd.elrpvkievGvlkradGsallelGatkivaavyGPreahp 56
                + lr+dGr+ d  lrp+  e+  l+r dGsal + G+t+++aavyGP   ++
  MMETSP1061-20121228|2844_1 23 KPLRADGRASDaTLRPLACELSCLHRPDGSALWKAGSTHVLAAVYGPIAPQN 74
                568*****998469*********************************77655 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0     4e-08   4.1e-05     307     350 ..      22      66 ..       3      77 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 4e-08
   TIGR03591 307 kekkRidgRklk.eiRpisievgvlpraHGsalFtRGetqalvvv 350
                 ++  R dgR+ + ++Rp+++e ++l r  Gsal++ G t +l++v
  MMETSP1061-20121228|2844_1  22 SKPLRADGRASDaTLRPLACELSCLHRPDGSALWKAGSTHVLAAV 66 
                 4557*****987479**************************9865 PP

>> TIGR01966  RNasePH: ribonuclease PH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.1e-06    0.0022       1      40 [.      26      66 ..      26     101 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.1e-06
   TIGR01966  1 rsdGrked.qlrpvklereflkhaeGsvlvevGdtkvlcta 40
                r dGr++d  lrp+  e + l+ ++Gs l + G t+vl ++
  MMETSP1061-20121228|2844_1 26 RADGRASDaTLRPLACELSCLHRPDGSALWKAGSTHVLAAV 66
                899**987369**************************9764 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   5.9e-05     0.061     335     374 ..      24      64 ..       2      68 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 5.9e-05
   TIGR02696 335 kvridgrgl.tdirslsaeveviprvhgsalfergetqilg 374
                  +r dgr   + +r+l++e++ + r  gsal++ g t +l 
  MMETSP1061-20121228|2844_1  24 PLRADGRASdATLRPLACELSCLHRPDGSALWKAGSTHVLA 64 
                 4799***872579*************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1495.88
//
Query:       MMETSP1061-20121228|2852_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|2853_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.31
# Mc/sec: 306.56
//
Query:       MMETSP1061-20121228|2849_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.53    6.3   4.7        1.5    4.8   0.1    2.1  2  TIGR01398 FlhA: flagellar biosynthesis protein FlhA


Domain annotation for each model (and alignments):
>> TIGR01398  FlhA: flagellar biosynthesis protein FlhA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.1   0.00036       1.5     281     336 ..     348     405 ..     334     420 .. 0.46
   2 ?    2.5   0.8    0.0018       7.4     303     339 ..     524     561 ..     504     579 .. 0.40

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00036
   TIGR01398 281 lvllallpglptlvllllalalaflalllskke....kqkeeaakeaekeeeeaeeeeee 336
                 l+ l+ +pg+ t + +    +la+ al+ ++      +q+++++++++++++++++++++
  MMETSP1061-20121228|2849_1 348 LLCLGGVPGIDTNPNTD--EMLAASALRGVRGGpqeqQQQHQHQQQQQQQQHQQQQQQQQ 405
                 66777788876665543..22333333333332111122222222222222222222222 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0018
   TIGR01398 303 aflalllskke.kqkeeaakeaekeeeeaeeeeeeeik 339
                 a +   +++++ +q+++++++++++++++++++ ++ +
  MMETSP1061-20121228|2849_1 524 AGVQNDVTHQQqQQQQQQQQQQSQSQSQSQQNHLHQHN 561
                 22222222222122222222222222222222223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       621  (0.15139); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.53
# Mc/sec: 1529.08
//
Query:       MMETSP1061-20121228|2854_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 389.68
//
Query:       MMETSP1061-20121228|2855_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|2856_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 648.95
//
Query:       MMETSP1061-20121228|2857_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 908.69
//
Query:       MMETSP1061-20121228|2858_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13    8.6   3.2       0.13    8.6   2.2    1.0  1  TIGR00602 rad24: checkpoint protein rad24


Domain annotation for each model (and alignments):
>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.2   3.1e-05      0.13     244     279 ..       3      40 ..       1      44 [. 0.81

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 3.1e-05
   TIGR00602 244 gdNnqdrllFsaetimnkeileeprvs..nikFNPiap 279
                   N  + +  ++ +i ++ i+ + +++   i+FNPi +
  MMETSP1061-20121228|2858_1   3 HVNVRNANQHKSTQIQSNPIQFHNSIQsnSIQFNPIQS 40 
                 556666788899**************7336******87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.30
# Mc/sec: 206.78
//
Query:       MMETSP1061-20121228|2859_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       315  (0.0767918); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|2861_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 371.97
//
Query:       MMETSP1061-20121228|2851_1  [L=1030]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1030 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.59
# Mc/sec: 2304.22
//
Query:       MMETSP1061-20121228|2867_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.07s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 1610.27
//
Query:       MMETSP1061-20121228|2865_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0007   16.4   3.8     0.0007   16.4   2.7    2.0  2  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
  ------ inclusion threshold ------
      0.014   10.9  33.6      0.018   10.5  11.3    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.026   10.0  29.7       0.08    8.4  20.6    1.6  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   5.7    0.0013       1.8     127     248 ..      36     176 ..      25     187 .. 0.56
   2 !   16.4   2.7   5.1e-07    0.0007      93     171 ..     209     285 ..     205     296 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0013
   TIGR03794 127 ekkflkskeaLeet.....igklreeeaaLsqevakqrqllsrklaklkrarillqqarkeq.ekrdeadkaeaey...........elqtkadeeel....etvvaklkqadlqlasvaekeletvearikevreeieelea 248
                 e ++l +k +L+et        l e+++ L+qe ++  + l+ +   lk a +  q a++e   +++ ad+ e +            +l  +++e+e       v+a+ +q++ +     +ke+++++ +++ ++e  +el  
  MMETSP1061-20121228|2865_1  36 ESEQLSAKTVLQETdlvtlRSALDEATQKLAQETERADE-LEVR-LSLKTASVDCQLAENEAtVHYELADAWEKNAdletrcaalelNLAAETREKEAllqrTAVLARRDQLQKAALVTSDKEILDLTGNLERMQERFSELAL 176
                 455666666666642000022333444444444333322.2222.34789999998888888666666666666557777777774444444444433333233444666666666667788888888888877777777654 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 5.1e-07
   TIGR03794  93 elrerlqearekLtqLqeqlekvrnfqvrekearekkflkskeaLeetigklreeeaaLsqevakqrqllsrklaklkr 171
                 e + r+++ ++ +  Lq +++ ++   vr+ e+++++  k+++ Le++i +l +e++a+++eva++ +ll+r  ++  r
  MMETSP1061-20121228|2865_1 209 EEDPRIKQLEALVDELQTDHQTMKTRFVRTLEKHQNQWRKERKSLEDQISELVAEKDAIEKEVAEIADLLERDHRE--R 285
                 66779999999999*********************************************************99655..3 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5  11.3   1.3e-05     0.018     787     931 ..      31     176 ..      18     186 .. 0.48
   2 ?    8.5  15.2   5.4e-05     0.074     240     428 ..     100     290 ..      85     297 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.3e-05
   TIGR02168 787 eeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekele.eleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlel 931
                 ++l+ae eql++++  ++++l  l+++l+e  +++a+++er+++le +++ ++ +++ +l+e+ ++   e++++ ++ ++le+++++le +l++ + ek++l ++ a l ++ + +++ l + +k++ +l+ +le+ +e++++l l
  MMETSP1061-20121228|2865_1  31 AALKAESEQLSAKTVLQETDLVTLRSALDEATQKLAQETERADELEVRLSLKTASVDcQLAENEATVHYELADAWEKNADLETRCAALELNLAAETREKEALLQRTAVLARRDQLQKAALVTSDKEILDLTGNLERMQERFSELAL 176
                 33444444444444444444444444444444444444444444444444444444323444444444455555555555555555555555555555555544444444444444445555555555555555555555555444 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 5.4e-05
   TIGR02168 240 eleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqle.keleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrl.eeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelek 428
                 el+ + e+ +++e+++++le +l++ + e e l ++ + l ++ + ++++l +  +ei +l+ ++e+++er ++l  +  ++l  ++ +++  ++++e + + ++    e   ++++lea ++e++ + + +++r  ++le++ ++ r+e ++le q+++l ae   +e+e+ ++++ +er ++e+ e+ +
  MMETSP1061-20121228|2865_1 100 ELADAWEKNADLETRCAALELNLAAETREKEALLQRTAVLARRDQLQKAALVTSDKEILDLTGNLERMQERFSELAlRATSSLGGEVPKDDDGNDDDEGSQNPVDPASIEEDPRIKQLEALVDELQTDHQTMKTRFvRTLEKHQNQWRKERKSLEDQISELVAEKDAIEKEVAEIADLLERDHRERCENTQ 290
                 56666677788889999999999999999999999999999999999999999999999999999999999888763667788899999999999999999999999999999999999999999999999998852667777788888999999999999999999999999999888888887766654 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  20.6   5.9e-05      0.08     671     917 ..      31     282 ..      21     297 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 5.9e-05
   TIGR02169 671 asekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekele.qleeeeeklkerleeleeklseleeeleekkeelkeleaeiee..leeklaklkealedleaelseekieeieeelekleeevsriear.leeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleee.leeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkr 917
                 a+ k+++e+l+++    e +l +l+s l+++ ++l + ++++++ e +++ + + ++ ql+e+e++++ +l++  ek   le   ++ + +l++   e e+  ++ ++ + +++l++     s+++i  ++ +le ++e  s++  r ++++  e+ k +  ++  e + +      +e + ++k++e+ ++el+++ + ++++ ++ le++ ++ ++e+k L+ +++el ae+ ++ek++ e++  +e+ +
  MMETSP1061-20121228|2865_1  31 AALKAESEQLSAKTVLQETDLVTLRSALDEATQKLAQETERADELEVRLSLKTASVDcQLAENEATVHYELADAWEKNADLETRCAALELNLAAETREKEAllQRTAVLARRDQLQKAALVTSDKEILDLTGNLERMQERFSELALRaTSSLGGEVPKDDDGNDDDEGSQNPVDPASIEEDPRIKQLEALVDELQTDHQTMKTRfVRTLEKHQNQWRKERKSLEDQISELVAEKDAIEKEVAEIADLLERDH 282
                 556666777777776667777777777777777777777777777766665555544366677777777777777777777777776666665555444441133444455667777777777777777777777777777777655145566666666655555555555555566666677777777777777777777665244556667777777777777777777777777777777666555422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       373  (0.0909313); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 879.93
//
Query:       MMETSP1061-20121228|2864_1  [L=799]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-254  843.5   2.5   1.7e-179  596.2   0.0    2.9  2  TIGR01059 gyrB: DNA gyrase, B subunit
   1.5e-190  632.5   4.2    6.4e-99  329.8   0.0    4.0  4  TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit
     2e-157  523.1   3.1      7e-82  273.6   0.0    4.0  3  TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit


Domain annotation for each model (and alignments):
>> TIGR01059  gyrB: DNA gyrase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.1   2.0   9.5e-76   1.3e-72       1     156 [.      45     204 ..      45     229 .. 0.94
   2 !  596.2   0.0  1.2e-182  1.7e-179     135     635 ..     234     793 ..     201     798 .. 0.90

  Alignments for each domain:
  == domain 1    score: 243.1 bits;  conditional E-value: 9.5e-76
   TIGR01059   1 ydadsikvleGleavrkrPgmyiGstgekGlhhlvyevvdnaidealaGycteievtieedgsvtvednGrGiPvdihpeegrsalevvltvlhaGGkfdk....dsykvsGGlhGvGvsvvnalseklevkvkrdgkeyrqefergepigeleavgeet 156
                 y+a +i+vl+Gle+vrkrPgmyiGstg++Glhhlv+evvdn++dealaG++t i+ ti+ dgs+tv+d+GrGiP+d+hp++++sale+vltvlhaGGkf++    ++ykvsGGlhGvG+svvnalse+++v v r gk + ++ferg +++ l+a++ ++
  MMETSP1061-20121228|2864_1  45 YGAGQITVLDGLEPVRKRPGMYIGSTGPDGLHHLVWEVVDNSVDEALAGHATFISTTINPDGSCTVVDDGRGIPTDVHPKTKISALETVLTVLHAGGKFENlggaGGYKVSGGLHGVGISVVNALSESVDVVVDRGGKGHAMRFERGVAVSGLNAEKATG 204
                 899************************************************************************************************86444479********************************************999887654 PP

  == domain 2    score: 596.2 bits;  conditional E-value: 1.2e-182
   TIGR01059 135 eyrqefergepigeleavgeetkktGtkvsflpdteife.t.....iefdyeilakrlkelaflnkgvkielederaeslkeeefyyegGikeyvkylnkdkealheeiiy............................isgeke..dvevevalqyn.daysenilsfanniktreGGthlegfkaaltrvlnsvakkrkllkdeksnltgedireGltavisvkvpdPqfegqtktklgnsevrsiveklvgealtefleenpeeakaivekaleaakareaarkarelvrrksalesstlPGkladcsskdPseselyiveGdsaGGsakqgrdrkfqailPlrGkilnvekarldkilkneeikalitalGlgikeddfdleklryhkivimtdadvdGshirtllltffyrylrelveqgyvyiaqpPlykvkkgkkdkelvkalylysdkekeeaksqle.........................skkaeleiqrykGlGemnaeqlWettmdpesrtlkkvkiedaaeadkiftvlmGdeveprrefieanaldvk 635
                 + r + +++e ++ l+  ++ ++ktGt+v+flpd e+f+ +     i fd + l+ r+ e+a+ln+g+ + l+d+r ++ k + fy+ gG+ ey + l k+k++l++ + +                            +++ ++  ++++ val+++ d y+e+ilsf+nni+tr+GGth++g+k++ltr++ns+ kk  ++k++++nl ge ireGlt+v+sv vp+P+fegqtk +lgn evr  v+ +++++l + +e++p+ ++a+ +ka +a+ a+ aar ar++vrrk+ l s+ lPGkladc s d sese++iveGdsa Gsakqgrdr++qailPlrGkiln+e+  ++ki++n+e++ li+alGlg+k+  fd + lry +ivimtdadvdG+hir llltff+ry+rel+e+g+vyiaqpPlyk++ g    + +k +y+y d+ k++ +++l                            + +++iqr+kGlGem++eqlW ttmdpe+r+l+kv++ed a ad+ +++lmGd+v+pr++fi +na +++
  MMETSP1061-20121228|2864_1 234 AARSRKKEAEKLKMLQSLQK-KRKTGTRVTFLPDIEVFKgEkgkpdIAFDPNRLKGRMDEIAYLNAGLVLALKDKRGKQPKTQVFYHAGGLAEYAQELCKTKNPLFTAPKRkkkaetadndplegllsddgltilasgsTQADENgnQISISVALRWSsDMYTESILSFCNNIRTRDGGTHVDGIKTCLTRTINSMSKKVGKAKETDKNLPGEFIREGLTCVVSVSVPEPEFEGQTKGRLGNIEVRPAVDGILSKELVKLFEFRPDLLDAVYSKASAAQAAASAARAARDMVRRKTLLTSTILPGKLADCASSDASESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIERVATEKIYQNNELQGLISALGLGVKGAVFDTKALRYGRIVIMTDADVDGAHIRVLLLTFFFRYQRELIERGHVYIAQPPLYKISAGS--GRSRKEVYAYDDSSKQSIIRELVgsasnygdndddgysegdddevgnaLSSGKITIQRFKGLGEMMPEQLWSTTMDPERRSLLKVTMEDGALADQTLSILMGDAVAPRKDFISTNAENLR 793
                 22333344455555666655.899**************8423445578**********************************************************99988788899999999999999999998776644444366999*******9999*************************************************************************************************************************************************************************************************************************************************************************************999..45566788888888888777766788888888888888888888888745568**************************************************************98876 PP

>> TIGR01058  parE_Gpos: DNA topoisomerase IV, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.4   1.1   5.6e-62   7.7e-59       4     150 ..      44     194 ..      41     242 .. 0.91
   2 !   35.9   0.0   4.5e-13   6.2e-10     150     235 ..     244     337 ..     196     348 .. 0.81
   3 !  329.8   0.0  4.6e-102   6.4e-99     240     562 ..     373     695 ..     337     702 .. 0.93
   4 !   67.1   0.0   1.6e-22   2.2e-19     563     628 ..     725     790 ..     705     798 .. 0.87

  Alignments for each domain:
  == domain 1    score: 197.4 bits;  conditional E-value: 5.6e-62
   TIGR01058   4 kynedaikvleGleavrkrpGmyiGstdskGlhhlvweivdnsvdevlagyadnievtldkdnsisvqddGrGipveihkkgkistvevvltvlhaGGkfde....gayktaGGlhGvGasvvnalsewlevevkrdgkvyqqrfenGGki 150
                 +y + +i vl+Gle vrkrpGmyiGst   Glhhlvwe+vdnsvde+lag+a+ i+ t++ d+s +v ddGrGip+++h k+kis++e+vltvlhaGGkf++    g+yk++GGlhGvG svvnalse + v v+r gk +  rfe G  +
  MMETSP1061-20121228|2864_1  44 DYGAGQITVLDGLEPVRKRPGMYIGSTGPDGLHHLVWEVVDNSVDEALAGHATFISTTINPDGSCTVVDDGRGIPTDVHPKTKISALETVLTVLHAGGKFENlggaGGYKVSGGLHGVGISVVNALSESVDVVVDRGGKGHAMRFERGVAV 194
                 688999**********************************************************************************************76444489**************************************99654 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 4.5e-13
   TIGR01058 150 ivqslkkiGttkktGtlvsfkpdpkifk......ktefnsniikerlkesafllkdlkleltdkktd..kkevffsenGledfvkylneekevl 235
                   + l+ + + +ktGt+v+f pd  +fk      ++ f++n +k r+ e a+l ++l l l+dk+ +  k++vf++  Gl ++ ++l ++k+ l
  MMETSP1061-20121228|2864_1 244 KLKMLQSLQKKRKTGTRVTFLPDIEVFKgekgkpDIAFDPNRLKGRMDEIAYLNAGLVLALKDKRGKqpKTQVFYHAGGLAEYAQELCKTKNPL 337
                 456677888999***************9444444468***************************977336899**************9998755 PP

  == domain 3    score: 329.8 bits;  conditional E-value: 4.6e-102
   TIGR01058 240 lfkgekngievevafqyn.dsesenilsfvnsvktkeGGthenglksaltkvlneyarkvnllkekdknlegsdireGlsavisvripeellqfeGqtkdklfskeakevvdeivedklaffleenkeeakllvkkaikardakeaakkareekksvkkkkkekgllsGkltpaqsknpaknelflveGdsaGGsaklGrdrkfqailplrGkvlnvekakladilkneeiatlifaiGtGv.gadfsikdlkydkiiimtdadtdGahiqvllltffyrymrplieaGkvyialpplyklskkdgkk..vkyawsdleleelkkkl 562
                   + + n+i + va++++ d + e ilsf n+++t++GGth +g+k+ lt+ +n+ ++kv+  ke dknl g+ ireGl++v+sv +pe   +feGqtk++l+  e++++vd i++++l+  +e   +    + +ka  a+ a  aa+ ar+  ++   +    ++l Gkl+ + s ++++ e+f+veGdsa Gsak+Grdr+ qailplrGk+ln+e++   +i +n+e++ li a+G Gv ga f+ k l+y++i+imtdad dGahi+vllltff+ry r lie+G+vyia pplyk+s ++g+     ya++d   +++ ++l
  MMETSP1061-20121228|2864_1 373 QADENGNQISISVALRWSsDMYTESILSFCNNIRTRDGGTHVDGIKTCLTRTINSMSKKVGKAKETDKNLPGEFIREGLTCVVSVSVPEP--EFEGQTKGRLGNIEVRPAVDGILSKELVKLFEFRPDLLDAVYSKASAAQAAASAARAARDMVRRK--TLLTSTILPGKLADCASSDASESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIERVATEKIYQNNELQGLISALGLGVkGAVFDTKALRYGRIVIMTDADVDGAHIRVLLLTFFFRYQRELIERGHVYIAQPPLYKISAGSGRSrkEVYAYDDSSKQSIIREL 695
                 55667899********963789*******************************************************************8..69******************************999**9**********************99864..4455679***************************************************************************96799********************************************************9987654488*****9988887765 PP

  == domain 4    score: 67.1 bits;  conditional E-value: 1.6e-22
   TIGR01058 563 knytlqrykGlGemnadqlwettmnpetrklvrvkiddllraerrvnvlmGdkvelrkkwieknvk 628
                  ++t+qr+kGlGem  +qlw ttm+pe r l++v+++d + a++ +++lmGd v +rk +i  n +
  MMETSP1061-20121228|2864_1 725 GKITIQRFKGLGEMMPEQLWSTTMDPERRSLLKVTMEDGALADQTLSILMGDAVAPRKDFISTNAE 790
                 5689*********************************************************99965 PP

>> TIGR01055  parE_Gneg: DNA topoisomerase IV, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.5   0.2   5.9e-59   8.1e-56       3     156 ..      44     204 ..      42     209 .. 0.93
   2 !  273.6   0.0   5.1e-85     7e-82     107     550 ..     203     695 ..     198     701 .. 0.80
   3 !   53.5   0.0   2.2e-18     3e-15     554     620 ..     724     787 ..     710     796 .. 0.87

  Alignments for each domain:
  == domain 1    score: 187.5 bits;  conditional E-value: 5.9e-59
   TIGR01055   3 nysakeievldglepvrkrpGmyidttrp...nhlaqevldnsvdealaGfaskievilhadqsievidnGrGipvdihpkedvsaveviltklhaGgkfsn....knyefsGGlhGvGisvvnalskrveikvkrdGklykiafekGakvedlevvetsg 156
                 +y a +i+vldglepvrkrpGmyi +t p   +hl+ ev+dnsvdealaG+a+ i+  + +d s +v+d+GrGip d+hpk  +sa+e +lt lhaGgkf n      y++sGGlhGvGisvvnals+ v++ v r Gk + + fe+G  v  l+  +++g
  MMETSP1061-20121228|2864_1  44 DYGAGQITVLDGLEPVRKRPGMYIGSTGPdglHHLVWEVVDNSVDEALAGHATFISTTINPDGSCTVVDDGRGIPTDVHPKTKISALETVLTVLHAGGKFENlggaGGYKVSGGLHGVGISVVNALSESVDVVVDRGGKGHAMRFERGVAVSGLNAEKATG 204
                 799*********************887653449********************************************************************9444347********************************************999887776 PP

  == domain 2    score: 273.6 bits;  conditional E-value: 5.1e-85
   TIGR01055 107 sGGlhGvGisvvna.lskrveikvkrdGklykiafek...GakvedlevvetsgkrltGtsvhfkpdpeifdslk......fsvsrlreilrakavlyrGveiefedeven..................................kkalilyedGlkdylaeavnglelliekifvGniegddeavewallwlpedgelltesyvnliptiqGGthvnGlrqalldalrefselrnl.lpravkltiedildrasyvlsikiqdpqfaGqtkerlssrqvaklvsgvikdafd.lf.lnqdvqaaeklaeiaissaerrlraakkvvr.kkltsklalpGkladctaqdlektelflveGdsaGGsakqardreyqailplkGkilnvaevsldkvlasqeiqdlevalaidsdsn..dlsqlryekiiiladadsdGlhiatlllalflkrlpklveeGhvyvalpplyrld....lskevyyaldeeekekllekl 550
                 +G +h   i v  a l +  +    +d +  + a ++    +k++ l++++   kr+tGt v f pd e+f+  k      f+++rl+  +   a+l  G+ +  +d+  +                                  kka  + +d l+  l++  +gl +l       + +g+++ ++ al w ++       s++n i t  GGthv+G++ +l ++++  s+ ++  +    +l  e i +  + v+s+ + +p+f+Gqtk rl   +v   v+g++  ++  lf +  d  +a      a  +a    raa+++vr k l +   lpGkladc++ d+ ++e+f+veGdsa Gsakq rdr +qailpl+Gkiln+  v+++k+ +++e+q l  al+++ +    d + lry++i+i++dad+dG+hi  lll++f++  ++l+e Ghvy+a+pply+++    +s++  ya d+  k++++ +l
  MMETSP1061-20121228|2864_1 203 TGAIHDEDIEVALAaLKDSTKTS-SKDEDEKEAARSRkkeAEKLKMLQSLQ--KKRKTGTRVTFLPDIEVFKGEKgkpdiaFDPNRLKGRMDEIAYLNAGLVLALKDKRGKqpktqvfyhagglaeyaqelcktknplftapkrkKKAETADNDPLEGLLSD--DGLTILASGSTQADENGNQISISVALRWSSDMYTESILSFCNNIRTRDGGTHVDGIKTCLTRTINSMSKKVGKaKETDKNLPGEFIREGLTCVVSVSVPEPEFEGQTKGRLGNIEVRPAVDGILSKELVkLFeFRPDLLDAVYSKASAAQAAASAARAARDMVRrKTLLTSTILPGKLADCASSDASESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIERVATEKIYQNNELQGLISALGLGVKGAvfDTKALRYGRIVIMTDADVDGAHIRVLLLTFFFRYQRELIERGHVYIAQPPLYKISagsgRSRKEVYAYDDSSKQSIIREL 695
                 56677777776543044444433.344444444444400145555555554..479***************8533223333**************************9887787777777777777777777777777777665545555555566666655..46666777777777778999*********999888889******************************988761556689*******************************************9666550553345777777777777777777799999877526789999*********************************************************************99988776654226999**************************************************833334678889********999877 PP

  == domain 3    score: 53.5 bits;  conditional E-value: 2.2e-18
   TIGR01055 554 kakievqrfkGlGemnpaqlrettldpekrrlvkltlddeedqrvdklvddllakkrsedrknflqe 620
                  +ki +qrfkGlGem+p ql  tt+dpe+r+l+k+t++d+    +d+ +  l++      rk+f+  
  MMETSP1061-20121228|2864_1 724 SGKITIQRFKGLGEMMPEQLWSTTMDPERRSLLKVTMEDGAL--ADQTLSILMGDA-VAPRKDFIST 787
                 69*************************************987..999999999988.7788888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.12s 00:00:00.68 Elapsed: 00:00:00.53
# Mc/sec: 1989.80
//
Query:       MMETSP1061-20121228|2869_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       640  (0.156021); expected 82.0 (0.02)
Passed bias filter:                      206  (0.0502194); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.42
# Mc/sec: 1395.31
//
Query:       MMETSP1061-20121228|2870_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1085.91
//
Query:       MMETSP1061-20121228|2871_1  [L=1091]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       342  (0.083374); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.16s 00:00:00.81 Elapsed: 00:00:00.64
# Mc/sec: 2250.00
//
Query:       MMETSP1061-20121228|2881_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 1026.58
//
Query:       MMETSP1061-20121228|2868_1  [L=758]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-13   45.4   0.0    7.8e-13   45.0   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.3e-08   32.4   0.0    0.00068   16.9   0.0    2.9  3  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
    1.4e-05   22.5   0.0    4.2e-05   20.9   0.0    1.8  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   5.7e-16   7.8e-13       6     228 ..     469     679 ..     463     690 .. 0.83

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 5.7e-16
   TIGR03903   6 vaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLm..lqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaev.lykqLsPvdvslPsaiaghpLgevLRkalnk 228
                  a+k++ + +  ++ +v+   Re ++ a ++hP i  L+ s + e+ +l+      +G  l +v+ +d      + + L   + +L+al   h++ +v+RD+kP+n ++ + +      ++DFG + ++ +          +t  + G+P+Y aPe +       + D++++G+++ e L G+       + +v l+k++  v+   P+ + +    +v++k l +
  MMETSP1061-20121228|2868_1 469 YALKMITKRQLIDAGQVKGVLREKQIMASIEHPFILPLIGSFQDEN-FLYLLSPVGQGGELFNVVHTDQRDGLDNNASLFygACILEALGYLHARNIVYRDMKPENALIDKDG---YCIMVDFGFAKIVVD----------KTYTLCGTPEYLAPEIIMSKGHDKAVDYWSFGVLIYEMLVGQSPFYMYGTDQVsLFKRIVMVKYQCPNYVSSDA-KDVIKKLLTR 679
                 5899999999999**************************9988777.9**999999**********998766666666653378**********************9996655...56788***9887654..........344679************************************87766666666578888888888888877653.4566665555 PP

>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0     2e-05     0.028     144     243 ..      70     164 ..      46     172 .. 0.80
   2 !   16.9   0.0     5e-07   0.00068     145     249 ..     189     293 ..     165     345 .. 0.76
   3 ?    0.1   0.0     0.066        90       5      42 ..     328     367 ..     324     417 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2e-05
   TIGR03896 144 lilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkee 243
                 +i+++l +++   l  + +k+    g+++ik ge  d +Yi   G+++        +r vgs   G  +Gel++l  +   +a+  a  +++l  +d+  
  MMETSP1061-20121228|2868_1  70 FIFSDLSDRERKMLIDAMQKETAEEGDMIIKQGEEGDFFYICQSGKINFIC----DGRAVGSCGAGGSFGELALLYDSPR-AASCMAGADTILWKVDQGT 164
                 89*******************************************987754....4799***************987777.5666666666677776655 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 5e-07
   TIGR03896 145 ilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaels.isedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaakLq 249
                 ++ +l+ + +a +a + ++ k+  g+ +++ g++ d +Yi+ +G++++  i   +as +      G  +Ge +++ +    +atv a++++ ++a d++ + a++ 
  MMETSP1061-20121228|2868_1 189 LFKDLDRQTIAKFADTLNTMKFQEGQRIVEKGQKGDVFYIVKNGQVRVHdIGLGDASFDDEVHEAGYWFGERALMTGAPR-AATVTAMTEVDVFACDRKTFEATIG 293
                 67888888899999999999999999999999999999999999999955888888888888899999999999998877.8999999999999999999888753 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.066
   TIGR03896   5 ravsesreiaaettLieeGkaad..dLfilldGaitvtik 42 
                 + + ++r+ a++++L e Gk  d   ++i+++G + +t k
  MMETSP1061-20121228|2868_1 328 VSMLKVRKYAKGQKLAEAGKVGDnpSMWIVKEGKLMITEK 367
                 566678999999*******9876226999***99988765 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.54   7.5e+02     122     143 ..     228     249 ..     226     255 .. 0.82
   2 !   20.9   0.0   3.1e-08   4.2e-05      98     138 ..     551     592 ..     486     637 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.54
   TIGR03724 122 ivkddklyliDfGLgkkskeve 143
                 ivk++++ + D+GLg  s + e
  MMETSP1061-20121228|2868_1 228 IVKNGQVRVHDIGLGDASFDDE 249
                 89999**********9876655 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 3.1e-08
   TIGR03724  98 evGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                  + e++g lH  +iv+ D+ ++N ++ kd+ ++++DfG +k+
  MMETSP1061-20121228|2868_1 551 CILEALGYLHARNIVYRDMKPENALIdKDGYCIMVDFGFAKI 592
                 566889********************446667889****997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.12s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 3573.13
//
Query:       MMETSP1061-20121228|2878_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 2569.39
//
Query:       MMETSP1061-20121228|2883_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 1173.24
//
Query:       MMETSP1061-20121228|2879_1  [L=875]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (875 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.20s 00:00:00.72 Elapsed: 00:00:00.55
# Mc/sec: 2099.83
//
Query:       MMETSP1061-20121228|2886_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   11.2  13.2      0.023   10.9   9.2    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   9.2   5.6e-06     0.023     314     444 ..      63     195 ..       7     219 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.6e-06
   TIGR02442 314 pfeeeqekeekkleekkeeak....pdeekedes.....eekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrsdkrgryvkaernreeaddlavdAtlraa 444
                 p + ++e+e+++l +k +++k    ++ ++ede+     +++e++e+ k ++ ++++dd+++e+ + + +++   ++ +++ + g+++++ +l+++       +G   + r ++r+r  +++++++ +  +a+ Atl+  
  MMETSP1061-20121228|2886_1  63 PRDMAKEEEDRRLLSKIKKEKeskyKHDSEEDEDditnnNDDEDDEDFKMDDADGENDDDDDENLEGTRKKKRALSSLSTTPSVGSTAEPGSLSTAP------AGVT-DPRRRRRRRQQQQQQQQRAVATIAASATLKLT 195
                 3333322222222222222221111111111111122111222222222223344444444444444444444444555555555555555555554......4444.22233344444444444578888888888754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1013.21
//
Query:       MMETSP1061-20121228|2885_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-109  364.3   0.0   1.7e-109  364.0   0.0    1.1  1  TIGR00430 Q_tRNA_tgt: queuine tRNA-ribosyltransferase
   1.5e-105  350.9   0.0   1.9e-105  350.6   0.0    1.1  1  TIGR00449 tgt_general: tRNA-guanine transglycosylases, various specificities
    7.4e-24   81.9   0.0      4e-15   53.0   0.0    2.1  2  TIGR00432 arcsn_tRNA_tgt: archaeosine tRNA-ribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR00430  Q_tRNA_tgt: queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.0   0.0  1.3e-112  1.7e-109       5     351 ..     203     589 ..     197     590 .] 0.96

  Alignments for each domain:
  == domain 1    score: 364.0 bits;  conditional E-value: 1.3e-112
   TIGR00430   5 ktdkrarvGklklehgsvetPvfmPvgtlaavkgldaeelkdleaelilantyhlylrpGeevvkelgglhkfmq.fdgailtdsGGfqvfsls...............................klrkieeeGvkfkspidGekieltpeksleiqealgsdiimaldectsypadldyaekslertlrWaersleaydrrkeeqalfgivqGgeykdlreksakdlveldfdGyaiGGlsvGeskedmleileyvipllPkd.......kPryllGvGtpedlleaiekGvdlfdCvlPtriarngtlfvseg.rlkiknakykedtr.pvdeeCdCyvCknysraylrhlikakellglrlatlhnlrfllrlvekireailedr 351
                  t+++arvG+++++hg v+tP ++ v+t aa+kg+d +++++ + +li++ntyhl l+pG ++++++gg+hkf++  d++++tdsGGfqvfsl+                               + +k++e+Gv f+s +dG+k  ltpe ++e q+++g+dii+ lde+++y++d+  + +s++r++rW  rsl ++ +  ++qa++ +v Gg  ++lr+ks+++l++l fdGyaiGG s+G+ k++++++l++++p++ +d       kPr+llG+   +++ +a+++G+d  d   Ptr+ar+gt+++++g  lk++  k+ ++   ++d+ C+C +C++y rayl hl+ka+e l + la+ hn++++ +++++ire i+e++
  MMETSP1061-20121228|2885_1 203 STKSQARVGRIHTPHGIVDTPGYVAVATNAALKGVDFRDADESGQQLIFSNTYHLMLHPGADLIAQAGGIHKFTNrLDRPFITDSGGFQVFSLAygsvqeelsskgelkrsggnkrnyggngmgkDAVKVSEDGVVFRSYRDGSKFLLTPESTVEAQKKIGADIIIPLDELPPYHIDRRALVESVDRSHRWEARSLREHLKDVKQQAMYCVVHGGIDRELRTKSVDFLTSLPFDGYAIGG-SLGNVKQELKDLLDWMMPMFDDDsngerkgKPRHLLGIADEDNIRHAVTRGIDTLDSCYPTRVARHGTVLTKDGgSLKLRSGKHSKEFGiKIDDSCTCPTCRHYDRAYLWHLFKANESLAVTLAAQHNIHYMNEMMKSIREDIMENK 589
                 45677********************************************************************97589*************************************************************************************************************************9999*************************************.*******************986555555559****************************************96549*****9998876449****************************************************9986 PP

>> TIGR00449  tgt_general: tRNA-guanine transglycosylases, various specificities
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.6   0.0  1.4e-108  1.9e-105       5     350 ..     203     589 ..     197     590 .] 0.94

  Alignments for each domain:
  == domain 1    score: 350.6 bits;  conditional E-value: 1.4e-108
   TIGR00449   5 kkdkraRvgklktehgsvetPvflPVgtlgavkglkaeelkklgaeiilaNtyhlylrpgekvvkelgglHkfme.fdgpiltDSGgfqvfslg...............................klreieeeGvkfkspidGekieltpekileiqeelgsDiimalDectppeadydeaekslertlrwaeeslealker.eeqaLfgivqGgtyedLRkksaeelaeldfdgyaiGgvsvgeskedlleileevvpllPke.......kPryllGvGkpedlleavelGvDlfDcvaparyarngrllvteg.riklknakykeDt.rpvdeeCdClvCknysraylrhlikanEllglrLateHNlhvllrliekirqaikedr 350
                 +++++aRvg+++t+hg v+tP ++ V+t +a+kg++ ++  + g ++i +Ntyhl l+pg ++++++gg+Hkf++  d+p++tDSGgfqvfsl+                               + ++++e+Gv f+s +dG+k  ltpe  +e q+++g+Dii++lDe++p+++d++ + +s++r++rw+ +sl ++ +  ++qa++ +v Gg  ++LR+ks+++l++l+fdgyaiGg s+g+ k++l++ l++++p+  ++       kPr+llG+   +++ +av++G+D  D+  p+r+ar+g++l+++g  +kl+  k+ ++   ++d  C+C +C++y+rayl hl+kanE l + La++HN+h++ +++++ir+ i e++
  MMETSP1061-20121228|2885_1 203 STKSQARVGRIHTPHGIVDTPGYVAVATNAALKGVDFRDADESGQQLIFSNTYHLMLHPGADLIAQAGGIHKFTNrLDRPFITDSGGFQVFSLAygsvqeelsskgelkrsggnkrnyggngmgkDAVKVSEDGVVFRSYRDGSKFLLTPESTVEAQKKIGADIIIPLDELPPYHIDRRALVESVDRSHRWEARSLREHLKDvKQQAMYCVVHGGIDRELRTKSVDFLTSLPFDGYAIGG-SLGNVKQELKDLLDWMMPMFDDDsngerkgKPRHLLGIADEDNIRHAVTRGIDTLDSCYPTRVARHGTVLTKDGgSLKLRSGKHSKEFgIKIDDSCTCPTCRHYDRAYLWHLFKANESLAVTLAAQHNIHYMNEMMKSIREDIMENK 589
                 45566********************************************************************9758****************999***********************************************************************************************9999866554449************************************.*******************975444444449****************************************965499***99987776269****************************************************9986 PP

>> TIGR00432  arcsn_tRNA_tgt: archaeosine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.4e-10   3.2e-07       6      93 ..     204     300 ..     197     309 .. 0.76
   2 !   53.0   0.0   2.9e-18     4e-15     100     318 ..     355     589 ..     333     590 .] 0.82

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.4e-10
   TIGR00432   6 kdalgrigilktehgrvrtpallpvinp.gkqti...dvkkfgaeivitnayiiyrs..lreraledgvhrlld.tdgpvmtdsgsfqls..eygdv 93 
                   +  r+g+++t+hg v+tp  + v    + + +   d  + g +++ +n+y +         a   g+h++ + +d p +tdsg fq+    yg v
  MMETSP1061-20121228|2885_1 204 TKSQARVGRIHTPHGIVDTPGYVAVATNaALKGVdfrDADESGQQLIFSNTYHLMLHpgADLIAQAGGIHKFTNrLDRPFITDSGGFQVFslAYGSV 300
                 45678****************999975413444433388899**********887664466678889****98748************862257776 PP

  == domain 2    score: 53.0 bits;  conditional E-value: 2.9e-18
   TIGR00432 100 iiefqeeiGsdigtsldiPtPPdvdreraeeelevtler.aresielkee.aklllnavvqGsthpdlrryaakelaklgvdiyPiGavvPlmeayryrdlaevil...eskse.lPtskPvhlfGaGhPmlfalavalGcdlfdsaayalyakddrylteeG.tkkleelk.lkef......PcscpvcsdytPeelaslekeer...erliaehnlyvsfeeiekikqaikdgs 318
                  +e q++iG+di+++ld   P  +dr+  +e ++ + +  ar   e  ++  ++ + +vv G    +lr ++ + l+ l++d y iG  +  +++   +dl + ++   +  s+     kP+hl+G         av+ G d +ds      a+    lt+ G ++kl   k  kef       c cp c +y+   l +l k +      l a+hn++   e ++ i+  i +++
  MMETSP1061-20121228|2885_1 355 TVEAQKKIGADIIIPLDELPPYHIDRRALVESVDRSHRWeARSLREHLKDvKQQAMYCVVHGGIDRELRTKSVDFLTSLPFDGYAIGGSLGNVKQ-ELKDLLDWMMpmfDDDSNgERKGKPRHLLGIADEDNIRHAVTRGIDTLDSCYPTRVARHGTVLTKDGgSLKLRSGKhSKEFgikiddSCTCPTCRHYDRAYLWHLFKANEslaVTLAAQHNIHYMNEMMKSIREDIMENK 589
                 6899*************99999*****9999999887751555667777735678899******************************9998877.689999988733322332134589***************************9999999999999875267887766566664444446************99988765441225799*****************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1769.85
//
Query:       MMETSP1061-20121228|2895_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 436.93
//
Query:       MMETSP1061-20121228|2891_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-08   30.8   0.0    1.1e-07   30.0   0.0    1.4  1  TIGR02096 TIGR02096: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02096  TIGR02096: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   2.8e-11   1.1e-07       2     105 ..     363     465 ..     362     490 .. 0.89

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2.8e-11
   TIGR02096   2 elaqkwi.ealnsgdmdavlallaeDvlyddeagsrklktkdqlarflaelanalpdnevdvvrftaeegsavvaewtvtGtyleafeGvPasgktlsvrgvtff 105
                 +l++ +i e++n+g+++++ ++ +  + +++e g +k++  + +  ++  ++ al+d   +++++  e + + + +   tG+++ + +G+Pa +k +s  g   f
  MMETSP1061-20121228|2891_1 363 DLVKTFIgEIWNRGEIQTIARVCSPRLRFNSENGLEKVG-HQGFSTMVLSVRSALDDYHCEIHSMVVEGR-KCFCRLRFTGKHVGTLLGYPATHKLVSWTGASEF 465
                 5777787578*****************************.*************************98777.*************************998886655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       415  (0.10117); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.15s 00:00:00.74 Elapsed: 00:00:00.63
# Mc/sec: 1099.91
//
Query:       MMETSP1061-20121228|2894_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1730.52
//
Query:       MMETSP1061-20121228|2893_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   15.8   0.0     0.0042   15.1   0.0    1.3  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
     0.0098   13.1   0.0       0.24    8.5   0.0    2.0  2  TIGR03448 mycothiol_MshD: mycothiol synthase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.1e-06    0.0042      60     117 ..     197     248 ..     176     257 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.1e-06
   TIGR01575  60 niavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkklgfkeial 117
                  ++v+p +qg+GiG+  lk+ ++       +++ L   e+ +   a+Y klgf+ +++
  MMETSP1061-20121228|2893_1 197 RMVVHPSVQGRGIGSYFLKQALESG----SASCLLATQEERN--VAFYSKLGFRVVKR 248
                 689***************9988765....4578887666544..569******99875 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00012      0.24      76     101 ..     197     222 ..     170     230 .. 0.81
   2 !    8.2   0.0   0.00014       0.3     236     291 ..     200     249 ..     199     251 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00012
   TIGR03448  76 ElvvhPaaRrrGigkalvrallaktg 101
                  +vvhP+  +rGig+ +++++l++++
  MMETSP1061-20121228|2893_1 197 RMVVHPSVQGRGIGSYFLKQALESGS 222
                 48**************9999998875 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00014
   TIGR03448 236 vdpaaqgrGLGkaLtliGlkhleerglravlLYveadneaAvrtYekLgFtvaevd 291
                 v+p+ qgrG+G+   +  l    e g ++ lL +++  e+ v+ Y+kLgF v+++d
  MMETSP1061-20121228|2893_1 200 VHPSVQGRGIGSYFLKQAL----ESGSASCLLATQE--ERNVAFYSKLGFRVVKRD 249
                 6778888888887765554....4466667776544..566778888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1242.52
//
Query:       MMETSP1061-20121228|2898_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1893.36
//
Query:       MMETSP1061-20121228|2899_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1418.88
//
Query:       MMETSP1061-20121228|2900_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 832.90
//
Query:       MMETSP1061-20121228|2905_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-10   36.6   0.0    1.3e-09   36.1   0.0    1.1  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   3.2e-13   1.3e-09     116     219 ..      77     193 ..      73     210 .. 0.76

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 3.2e-13
   TIGR02933 116 eqfvrPeqrltr.hlLltvneddreavrerieallrrlr....ak....reafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLf....qla..egeLsavieselGwhlLlCea 219
                 e f+  +qr+++ h+L+    dd+e v   i  ll  ++    ++    +  faela r s+CP+  +gG LG  ++G +  e d  Lf    +la  +g++  ++ ++ G h+++  +
  MMETSP1061-20121228|2905_1  77 EDFKAQDQRVRAsHILIKG--DDSEKVLGTIRNLLGEIQvragDGdeplPRVFAELARRESDCPSRDQGGDLGLFGKGKMVKEFDRVLFpddpNLAppAGNIVGPVVTDFGAHIIYVTK 193
                 6799999998754888765..8888888888888766552221222233468*************************************5555465447999999*********99754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 973.99
//
Query:       MMETSP1061-20121228|2907_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1061-20121228|2914_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|2910_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   13.9   0.0     0.0054   13.3   0.0    1.2  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.3e-06    0.0054     187     253 ..     285     353 ..     256     359 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.3e-06
   TIGR03026 187 YesiiekavvlvtsietAeliKlaeNtfrav...kiafiNelariceklgidvkevieaagldprigknf 253
                 Y +  +k v+   s+  A  i  + N++ ++   k+ f+N+l+++ce +g d +ev  + g +++   ++
  MMETSP1061-20121228|2910_1 285 YPECLNKMVMYPVSTVLATTIRHVLNFMNETtrdKFVFANNLSEVCEIMGWDLEEVESCGGVKEF-MHKY 353
                 444444666667777778888877777766545589*********************99999988.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|2919_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|2912_1  [L=759]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.53
# Mc/sec: 1890.18
//
Query:       MMETSP1061-20121228|2918_1  [L=950]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    4.7   8.2        2.4    4.2   5.7    1.1  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
        4.7    2.5   9.8        6.9    2.0   6.8    1.1  1  TIGR02712 urea_carbox: urea carboxylase


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   5.7    0.0012       2.4     614     706 ..     161     251 ..     146     277 .. 0.62

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0012
   TIGR04154 614 dYletvlveeqeetgsqtvsvnkqryyetmvarLhlfdGsaaepsallveveeeeaseqslkvetkeeeenaseaeaaaeadnaasaaeafae 706
                 +++ ++   + + ++ +tvs  ++    +m    ++ ++ ++e++  l e +++++++q++++e++++e+n ++++++ + + + + ++  ++
  MMETSP1061-20121228|2918_1 161 EFYHKFRRFDRKVSENGTVSNTEKDHLYSMRFEDYVRYCEKRESY--LNERQQQQQQQQQQQNEEQNQEQNQEQNQNQNNGERQSEPEQDDEK 251
                 5666677778888999999999999999***********655555..4444444444444444444444444444443333333332222222 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   6.8    0.0034       6.9    1063    1139 ..     188     265 ..     161     279 .. 0.54

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0034
   TIGR02712 1063 vkveveesvfdlaeyerflaeeadsieafkerqqaafeeeraklkkeaeaelkeeke.eaaeeeaeleegavavesel 1139
                  ++++ e+ v   ++ e++l+e +++ ++ +++q++++++e+++ +++++++ ++++e e+ +e++e ee+ + v+ + 
  MMETSP1061-20121228|2918_1  188 YSMRFEDYVRYCEKRESYLNERQQQQQQQQQQQNEEQNQEQNQEQNQNQNNGERQSEpEQDDEKEEEEEEPTFVFEDH 265 
                  444555555555555566666655555555555555555555544444444444433233344444445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       441  (0.107509); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.71u 0.18s 00:00:00.88 Elapsed: 00:00:00.76
# Mc/sec: 1649.86
//
Query:       MMETSP1061-20121228|2917_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-08   32.0   0.0    1.8e-08   31.5   0.0    1.1  1  TIGR03449 mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
    3.1e-06   24.4   0.0     0.0046   13.9   0.0    2.1  2  TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
    1.3e-05   22.1   0.0    3.4e-05   20.7   0.0    1.6  1  TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
     0.0011   15.0   0.0     0.0015   14.5   0.0    1.1  1  TIGR02470 sucr_synth: sucrose synthase
     0.0013   15.5   0.0     0.0019   14.9   0.0    1.2  1  TIGR02472 sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain
  ------ inclusion threshold ------
      0.037   10.8   0.1        2.8    4.6   0.0    2.1  2  TIGR04157 glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system


Domain annotation for each model (and alignments):
>> TIGR03449  mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   2.6e-11   1.8e-08     187     396 ..     243     470 ..     214     475 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 2.6e-11
   TIGR03449 187 pdrvdvvaPGvdl.el..frPgdraaerarlGlpldekvvafvGriqplkaPdvllravaellerdPe..........selrvlvvGGp.sGsglaepealvelaeelGiakrvrflpPrpkeelvevyraadvvavPsysesfGlvaleaqasGtPvvaarvGGlpvav.....adGetGllvdGhdpaayadaleklld.ddelrarlgaaavehaakfsWeataeal 396
                 ++ +++v P   + ++  ++  d+ +++++   +++e+ ++ +G+ +p k  ++ + a + ll+ +Pe          + +r+ ++G     +   ++++l+++ ++l + + v f    p +el +    a++ +    +e fG+  +e  a+G   +a + GG +  +     +  +tG+l    ++++ya+a+++ l  dd+   ++ ++a + a+ fs +a  ++l
  MMETSP1061-20121228|2917_1 243 NQPIEIVYPPCRVpDRvdHSSDDKDEQQQQRSEQQRENTIVSIGQFRPEKNHKLQIEALSVLLRTHPElrissdsnptTPVRLRLIGSCrNDADRGRVDELRKIVSDLDLGEHVIFDINPPYSELQASMFRAKIGIHTMRQEHFGIGIVEMMAAGLLTIAHNSGGPKSDIvlpgdNTSATGFL--AITAEEYAEAMHRALAmDDRDASAMRHRARASATRFSDSAFDQRL 470
                 3457788777766322113444566677777788889999999****99999999999999999999876666544445578888887515567789*******************9888888886554446788888899************************876542221123356666..568899*****9755538889999************987766655 PP

>> TIGR04047  MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00033      0.23     172     226 ..     258     312 ..     251     315 .. 0.92
   2 !   13.9   0.0   6.7e-06    0.0046     283     359 ..     380     462 ..     338     471 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00033
   TIGR04047 172 rfsaaaeeadaalrrrlglelgpvvlavGGiEpRKntidlleAfallrkerPdaq 226
                 r  + ++++d ++++r +++  + ++++G   p Kn    +eA+++l +++P+++
  MMETSP1061-20121228|2917_1 258 RVDHSSDDKDEQQQQRSEQQRENTIVSIGQFRPEKNHKLQIEALSVLLRTHPELR 312
                 5667789999999****************************************97 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 6.7e-06
   TIGR04047 283 pslkEGfGLvvlEalAsGvPvvasel.aPfteyl...deeeavvadpsdpesladalaaal..eeaarealaaagkelaaryt 359
                 +  +E fG+ ++E +A+G+  +a +   P  + +   d+++a+   + ++e+ a+a+++al  ++++++a+++++++ a+r++
  MMETSP1061-20121228|2917_1 380 TMRQEHFGIGIVEMMAAGLLTIAHNSgGPKSDIVlpgDNTSATGFLAITAEEYAEAMHRALamDDRDASAMRHRARASATRFS 462
                 455799************9988876526999988898888999999***********77761155566778888888888776 PP

>> TIGR03999  thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     5e-08   3.4e-05     194     361 ..     274     465 ..     239     474 .. 0.64

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 5e-08
   TIGR03999 194 gieedekvlihvsnfRkvkrvedvvevFe.......kv......qkevkakLllvGdG...Per...seaeelvkelgledrvlflGk..qdeveellslsDllllpsekesFGLaaLeamacgvpviasnvgGlp.evv....eegetGflvevgdveemaekalklledeeklqelkkaalekakerfesek 361
                   ++ e+ ++ +  fR+ k+ +  +e  +       ++      + +++ +L l+G      +r    e +++v++l+l ++v f  +   +e++  +  + + + +  +e FG+ ++e ma+g+ +ia n gG + ++v    +   tGfl+ + +  + a +   l  d++  ++++++a+++a +rf+ + 
  MMETSP1061-20121228|2917_1 274 SEQQRENTIVSIGQFRPEKNHKLQIEALSvllrthpELrissdsNPTTPVRLRLIGSCrndADRgrvDELRKIVSDLDLGEHVIFDINppYSELQASMFRAKIGIHTMRQEHFGIGIVEMMAAGLLTIAHNSGGPKsDIVlpgdNTSATGFLAITAEEYAEAMH-RALAMDDRDASAMRHRARASA-TRFSDSA 465
                 345667777777777776665433333221111111221111002334567888885411133311134567899999999999965533678999999999********************************752566233234578***977655444443.345568888899******999.8888765 PP

>> TIGR02470  sucr_synth: sucrose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.2e-06    0.0015     648     715 ..     378     448 ..     372     475 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.2e-06
   TIGR02470 648 vqpalyeafGltvveamtsglPtfatkfGGpl.eiie..dgvsGfhidPteleeaaeklveffekckedPs 715
                 ++  + e fG+ +ve m++gl t+a + GGp+ +i+   d++s      + +ee ae + + +   ++d s
  MMETSP1061-20121228|2917_1 378 IHTMRQEHFGIGIVEMMAAGLLTIAHNSGGPKsDIVLpgDNTSATGFLAITAEEYAEAMHRALAMDDRDAS 448
                 6677789************************7245543344444444456666666666666666665555 PP

>> TIGR02472  sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-06    0.0019     345     426 ..     378     462 ..     367     473 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.8e-06
   TIGR02472 345 vnpaltePfGltlleaaacGlPivatedGGPr.diiakcknGllvd..vldleaiksalekalsdeeqwklwsenGiegvrrhys 426
                 + +   e fG+ ++e  a+Gl  +a + GGP+ di+   +n       ++ +e+ ++a+++al+ +++     +   +++ + +s
  MMETSP1061-20121228|2917_1 378 IHTMRQEHFGIGIVEMMAAGLLTIAHNSGGPKsDIVLPGDNTSATGflAITAEEYAEAMHRALAMDDRDASAMRHRARASATRFS 462
                 55566799***********************758999888865544115678899999999998888766666666666666655 PP

>> TIGR04157  glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0066       4.5     210     261 ..     262     313 ..     215     315 .. 0.85
   2 ?    4.6   0.0    0.0041       2.8     301     335 ..     374     408 ..     367     436 .. 0.91

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0066
   TIGR04157 210 seeerkklrkkyslkeeekiilfvGRLdeiKgvkalieaFkkvlkkspncrL 261
                 s++++ +++++ s ++ e+ i+ +G     K  k  iea   +l+++p+ r+
  MMETSP1061-20121228|2917_1 262 SSDDKDEQQQQRSEQQRENTIVSIGQFRPEKNHKLQIEALSVLLRTHPELRI 313
                 556666777777778999******************************9885 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0041
   TIGR04157 301 advGvlpSlhEqcsyvaiEmlmhglPligttstGl 335
                 a +G+    +E ++  ++Em+  gl  i+ +s G 
  MMETSP1061-20121228|2917_1 374 AKIGIHTMRQEHFGIGIVEMMAAGLLTIAHNSGGP 408
                 789999999********************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2257.96
//
Query:       MMETSP1061-20121228|2923_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 2276.81
//
Query:       MMETSP1061-20121228|2930_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 534.24
//
Query:       MMETSP1061-20121228|2926_1  [L=697]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.36
# Mc/sec: 2555.46
//
Query:       MMETSP1061-20121228|2927_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.058    9.3   0.6      0.099    8.5   0.1    1.5  2  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type


Domain annotation for each model (and alignments):
>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0     0.072   2.9e+02     329     402 ..      52     129 ..      45     137 .. 0.68
   2 ?    8.5   0.1   2.4e-05     0.099     259     364 ..     173     288 ..     157     307 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.072
   TIGR01116 329 kkkvekvGeateaalkvlveklglsaaknkkslksrealacns.likkkatlefsrdrksm...svlvksnklfvkGa 402
                 ++k+ + G++ ++ +  +ve     +++++k++++++  + ++ ++  +    f+++r  +   sv +   k+++  a
  MMETSP1061-20121228|2927_1  52 SEKLLAAGNPGDVDFIGMVEEWRAEQGRKHKTSNQKSSSRNSNiIVAVRKRPMFEKEREKLdhdSVSCYDPKVWIHSA 129
                 566778899999999999999998888877777666655544413444444555555554433488888888888776 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 2.4e-05
   TIGR01116 259 vetlGcttvicsdktGtlttnkmsvaklvalekef..........kvegttyepveakikdleelakiaalcndsklavdkkkvekvGeateaalkvlveklglsaaknkkslksr 364
                 v+t G++tv c  +tG+  t +ms ++ ++ ++ +          ++  + +e   + ++dl +  k + l +d k  v+ + +++v  +t a +  ++ek + + ++++++++ +
  MMETSP1061-20121228|2927_1 173 VHTKGRATVFCYGQTGSGKTHTMSGIQQILAHDLYeemkakrenvEIRLAFFELYSGYVQDLLHDRKRCKLLEDGKGEVNITGLQEVRASTAADFLLVIEKGHSQRTTRSTEANDS 288
                 899********************9877665544441111111111566677889999999999999*************************9999999999877666655544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 1896.96
//
Query:       MMETSP1061-20121228|2928_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.3e-117  388.1   0.1   8.5e-117  387.5   0.0    1.3  1  TIGR00658 orni_carb_tr: ornithine carbamoyltransferase
    6.5e-41  138.7   0.4    3.5e-39  133.0   0.3    2.4  1  TIGR03316 ygeW: probable carbamoyltransferase YgeW
    5.9e-38  128.5   0.0    7.7e-38  128.1   0.0    1.1  1  TIGR00670 asp_carb_tr: aspartate carbamoyltransferase


Domain annotation for each model (and alignments):
>> TIGR00658  orni_carb_tr: ornithine carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.5   0.0  6.2e-120  8.5e-117       1     303 [.      77     381 ..      77     382 .. 0.97

  Alignments for each domain:
  == domain 1    score: 387.5 bits;  conditional E-value: 6.2e-120
   TIGR00658   1 rhllslldlseeelkellelakklkkekkkgke..ekklkgktlaliFekrstRtRvsfevaayelGaqvlylnkeelqlgrkesikDtarvlsryvdaivvRvykhedveelakyasvPvingLtdlehPcqilaDlltikeklg.klkevklvyvGDannvanslllaaaklGldvvvatPeglepeaeivkkakkiakenggkleltedpkkavkdadviytDvwvsmGeeekkeerlkllkpyqvneellelakpevkflhCLPavrGeevtdevlegeasivfdeaenRlhaqkavlkall 303
                 +h++s+ +ls++elk ll++++++k+    + +   k l g+++++iF+krstRtRvs+e++++ lG+++l+l+++++qlg +es++Dta vlsr+ d i +Rvy+h+d++elakya+vP+in+L+dl hP+q laDl+ ++ ++g +l++ ++++vGD+nnv ++l+l+++k+G++v++atPeg+ep+a+i+ k++ +a+eng +l+ t   ++av++adv++tD+wvsmG+e++ e+r+k + +yqvn+el+  a++ ++flhCLP++  eevtdev++++as+vf eaenR+++ +av++a l
  MMETSP1061-20121228|2928_1  77 QHFVSIDQLSNDELKGLLDVSHHYKEIYSDKSKslPKPLDGHSVSMIFQKRSTRTRVSTETGMAMLGGHALFLGPSDIQLGVNESMRDTASVLSRFNDLILARVYAHRDITELAKYAEVPIINALSDLHHPLQTLADLMALQQHFGkDLSGKTVAWVGDGNNVLHDLMLGSLKMGMNVQIATPEGYEPDADIMAKSEGLAEENGVSLTTTTVADEAVNGADVVVTDTWVSMGQEDEYEKRVKEFDGYQVNTELMGKANDGAVFLHCLPRHV-EEVTDEVIYSDASLVFPEAENRMWTVMAVMAAQL 381
                 59***********************9755443323899************************************************************************************************************99*************************************************************************************************************************99.******************************9876 PP

>> TIGR03316  ygeW: probable carbamoyltransferase YgeW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.0   0.3   2.6e-42   3.5e-39       1     356 [.      74     379 ..      74     380 .. 0.89

  Alignments for each domain:
  == domain 1    score: 133.0 bits;  conditional E-value: 2.6e-42
   TIGR03316   1 lrekdllllwektrdeleavldvaaalkalraenist..kllesglgislfrdnstrtrfsfasalnllGleaqdldegksqiahGetvretaevisfladaiGirddmylgvGnaymrevakaldegykdgvleqrialvnlqcdidhptqaladiltlrekfGslenlkGkkvaltwayspsygkplsvpqgiiglmtrlGmdvtlahpegyellpevvevakknaaesGgkfrkvnsmeeafkdadivyakswapiavmekrtelytasdteGlellekellaqnkkykdwecteelmkltkdgealymhclpadisGvsckegevteevldkyrvviykeasyklyviaalila 356
                 l++++++ + + ++del+ +ldv+++ k+  +++ +   k l+     ++f+  strtr s ++++++lG++a  l +   q++  e++r+ta+v+s++ d i  r  +y       + e+ak+             ++++n   d++hp q+lad++ l+++fG  ++l Gk va  w      g    v   +++   ++Gm+v +a pegye   +++ ++   a+e+G++++ ++  +ea+  ad+v + +w  +           ++d e     e     + k++  ++++ elm  ++dg a+++hclp     v     evt+ev+    + ++ ea+++++++ a+++a
  MMETSP1061-20121228|2928_1  74 LKGQHFVSIDQLSNDELKGLLDVSHHYKEIYSDKSKSlpKPLDGHSVSMIFQKRSTRTRVSTETGMAMLGGHALFLGPSDIQLGVNESMRDTASVLSRFNDLILAR--VY---AHRDITELAKY-----------AEVPIINALSDLHHPLQTLADLMALQQHFG--KDLSGKTVA--WV-----GDGNNVLHDLMLGSLKMGMNVQIATPEGYEPDADIMAKSEGLAEENGVSLTTTTVADEAVNGADVVVTDTWVSMG----------QED-E----YE----KRVKEFDGYQVNTELMGKANDG-AVFLHCLPRH---V----EEVTDEVIYSDASLVFPEAENRMWTVMAVMAA 379
                 6899************************98877665434899************************************************************9888..56...34668899999...........789***************************..******765..76.....445567788888889***************999999999999*****************************9877..........222.2....22....23357889***********965.9*******99...6....699*************************9986 PP

>> TIGR00670  asp_carb_tr: aspartate carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.1   0.0   5.6e-41   7.7e-38       1     301 [.      77     379 ..      77     382 .. 0.90

  Alignments for each domain:
  == domain 1    score: 128.1 bits;  conditional E-value: 5.6e-41
   TIGR00670   1 rhlisiedlsreeielllekaeelkqklsskeksk..alkgkivaalFfEpSTRTrlSFetaakrlggsvvnlsdseasSvaKgEtlaDTikvleaysvdiiviRhrlegaarliaevaevpviNaGdGknqHPtQtLLDlyTileefg.rldglkvalvGDlkygRtvhSlvkaLalfgvevylvaPeeLrlpkeilee....lkkkgvkvketesleevleeaDvlyv.tRiQkERlpdleeleklkeaykitkerlealkkevkvlHPlPvnrvdeiesevldtekaklfkQaknGvavRmallel 301
                 +h +si++ls++e++ ll+ ++++k+  s+k+ks    l+g+ v+++F   STRTr+S et +  lgg+ + l   + + +   E++ DT++vl+ +  d i+ R   +     +a++aevp+iNa +   +HP QtL Dl+ ++++fg +l+g++va vGD     + h l+ +  ++g++v++++Pe      +i+ +     +++gv++++t+  +e+++ aDv+ + t +     ++ e+  k  + y++++e + ++++++ +lH lP ++v e+++ev+ +  + +f  a+n ++  ma+++ 
  MMETSP1061-20121228|2928_1  77 QHFVSIDQLSNDELKGLLDVSHHYKEIYSDKSKSLpkPLDGHSVSMIFQKRSTRTRVSTETGMAMLGGHALFLGP-SDIQLGVNESMRDTASVLSRF-NDLILARVYAHRDITELAKYAEVPIINALSD-LHHPLQTLADLMALQQHFGkDLSGKTVAWVGDGN--NVLHDLMLGSLKMGMNVQIATPEGYEPDADIMAKseglAEENGVSLTTTTVADEAVNGADVVVTdTWVSMGQEDEYEKRVKEFDGYQVNTELMGKANDGAVFLHCLP-RHVEEVTDEVIYSDASLVFPEAENRMWTVMAVMAA 379
                 5899************************9999654469*********************************9999.899999***************.********9999999999**********875.57*****************99***********76..599***999999***********9988888887622224799*******************9652555555555445555555679*********************.6799****************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1752.27
//
Query:       MMETSP1061-20121228|2932_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-05   21.0   0.0    8.2e-05   20.1   0.0    1.4  1  TIGR02821 fghA_ester_D: S-formylglutathione hydrolase
  ------ inclusion threshold ------
      0.033   11.2   0.0      0.063   10.3   0.0    1.4  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase


Domain annotation for each model (and alignments):
>> TIGR02821  fghA_ester_D: S-formylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0     4e-08   8.2e-05     118     180 ..     267     331 ..     255     360 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 4e-08
   TIGR02821 118 ysyvveelpalvaaefPld..aerqgitGhsmGGhGalvialknPdlfksvsafaPivaPsrspw 180
                  ++v++ ++ lv+++f  d  aer+  +G smGG+ +l + l++Pd+f   + ++P   P++ ++
  MMETSP1061-20121228|2932_1 267 ADFVANTVKPLVDNRFRTDpsAERNFCIGSSMGGQASLHLLLRHPDKFGGAACLSPAFGPAILNF 331
                 5899999*********99844589999**********************9999998888876554 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   3.1e-05     0.063      99     141 ..     287     328 ..     264     343 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.1e-05
   TIGR03343  99 diekahlvgnsmggatalnfaleypdrlgklilmgpgglgksl 141
                 + e+   +g smgg ++l + l +pd+ g    + p+ +g+++
  MMETSP1061-20121228|2932_1 287 SAERNFCIGSSMGGQASLHLLLRHPDKFGGAACLSPA-FGPAI 328
                 679999**********************999888886.45555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1653.75
//
Query:       MMETSP1061-20121228|2937_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 508.16
//
Query:       MMETSP1061-20121228|2940_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 653.35
//
Query:       MMETSP1061-20121228|2941_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|2936_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1216.77
//
Query:       MMETSP1061-20121228|2939_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 1742.26
//
Query:       MMETSP1061-20121228|2942_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-18   62.2   0.0    1.7e-17   60.2   0.0    1.7  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    2.2e-10   37.2   0.0      5e-10   36.1   0.0    1.5  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    8.8e-10   35.4   0.0    1.9e-09   34.4   0.0    1.4  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    4.2e-07   27.2   0.0    1.1e-06   25.8   0.0    1.7  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    8.2e-06   22.7   0.0    2.1e-05   21.3   0.0    1.6  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   2.1e-20   1.7e-17      14     344 ..     325     675 ..     322     687 .. 0.73

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 2.1e-20
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpsliela..akekpkkglkvlyitPLkaLakdieraleapie.elgleirvelrtGDtssserarqr...kkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgs.kRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeek....eeka..klvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkar..ttlvFtNtRsqaEllfqaLleanee.laleialhHgsldkeqRekveaalkagk.......lr.avvcTssLdLGvDf..gdvdlviqvGspkgvaRllQRiGRsn 344
                 p + Q  ++ ++ +g+++++   TG+GKT a  +p l++++     k++ + kvl ++P   La +i+   ++  +   + ++ v + +G  ++s r + r   +kp+d+L+ Tp  ++ +l ++++   +++++++v+DE+  L+     G +l+ ++   + l  + + + ++AT+ +  ++ e+++ e       +    + +   + k+  v+  +p++++       +   +++++l++++++r   tlvF+Nt   +  + + L ++       e+  +H++++ e+R+   + +++g+       +  +++cT     GvDf  ++v+  +    pk  a  + R+GR++
  MMETSP1061-20121228|2942_1 325 PSRIQSLAWPQILSGKHTIVADQTGSGKTCAYLIPCLLRAIqtPPIKQNGSPKVLVLAPTAELADQIQTVCSKISQsGPSFNTMVVTANGKYTTSIRDQIRmiqRKPADVLISTPGRISTILRTRNSGLDLSNVQSIVLDEVDILMIDeTFGPQLR-TVGEAAPLLDQTQFIFVTATLPD--SIVETITSEFPgvvqVKGPglHRLAP-SLKENLVDVSVPSDSN--RNEDLCFDVKAKALLKALRQNRcrRTLVFCNTVESCRSVENLLNRKDRRgRVFEVLAYHSAMTPEARNANLQIFAKGRkgdnnedVDyVLICTDRAARGVDFdeAPVNHCVVFDFPKDPAEYVRRVGRTA 675
                 66789999*******************************9954344555789***************99887765415678889999999987777766432227899***********************************9986515698887.67888999999999999**9965..34444443333111111110011222.2222223333333222..2222233345678889998875227********999988776666544413446677**********998888877652222222432679***********4448**********************86 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   6.1e-13     5e-10      29     166 ..     317     466 ..     302     480 .. 0.75
   2 ?   -2.8   0.0      0.36   2.9e+02     344     376 ..     648     680 ..     571     687 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 6.1e-13
   TIGR03817  29 leaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp......ratalylaPtkalaadqlravkelee....rdvraatydGdtpaeerewi....rekaryvltnPdmlhlgilpsharWakflralryvvvdec 166
                 ++ aGi++p + q  a     +G+h +va  t sGk+ ayl+P l +  + p        ++l laPt  la     +++++++     +  + t +G   +  r+ i    r+ a+++++ P  +  +il++ +     l +++ +v+de+
  MMETSP1061-20121228|2942_1 317 CNGAGITRPSRIQSLAWPQILSGKHTIVADQTGSGKTCAYLIPCLLRAIQTPpikqngSPKVLVLAPTAELADQIQTVCSKISQsgpsFNTMVVTANGKYTTSIRDQIrmiqRKPADVLISTPGRIS-TILRTRNSGL-DLSNVQSIVLDEV 466
                 4679***************************************987777775577776789**********96666677788887877445555666666665555551111567888888888774.6777655433.3667777777775 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.36
   TIGR03817 344 disGldavviaGfPGtvaslwqqaGraGrrgqd 376
                 d + ++  v+  fP   a + +++Gr+ r+g+ 
  MMETSP1061-20121228|2942_1 648 DEAPVNHCVVFDFPKDPAEYVRRVGRTARAGRI 680
                 346678889999999999999999999998874 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   2.3e-12   1.9e-09      24     326 ..     335     685 ..     324     708 .. 0.74

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 2.3e-12
   TIGR01389  24 evldgrdvlavlPtGGGkslCYqvPaLllkglt...........vvisPLisLmkDqvdq....LraaGveaaalnstlsak...eaqeilkalaagelklLYvaPerleq..dkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadaevredivek....Lelkda..aefvssfdRenlafsvvkkenkk.........kqlleylkkereksGiiYassRkkveelaeaLeskg.....iealaYhaGlskkvRaeaqekFle........ddvkvvvat..vaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeail 326
                 ++l+g+++++   tG Gk   Y +P Ll+   t           +v++P  + ++Dq+++    + + G + +++  t + k     ++ ++ ++ +  ++L  +P r+ +  ++  + l+ ++++ + +De   +      F p+ +++ge a  ++++ +i +tat  +++ e i+++    +++k +  +++  s++ + +  sv  ++n++         k ll+ l+++r +  ++++++ +   ++++ L+ k      +e+laYh+ +  + R+ +++ F +        d   v++ t   a G+  d + v + + +d Pk+  +y   +GR  R G+   + +
  MMETSP1061-20121228|2942_1 335 QILSGKHTIVADQTGSGKTCAYLIPCLLRAIQTppikqngspkvLVLAPT-AELADQIQTvcskISQSGPSFNTMVVTANGKyttSIRDQIRMIQRKPADVLISTPGRISTilRTRNSGLDLSNVQSIVLDEVDIL-MIDETFGPQLRTVGEAAPLLDQTQFIFVTATLPDSIVETITSEfpgvVQVKGPglHRLAPSLKENLVDVSVPSDSNRNedlcfdvkaKALLKALRQNRCRRTLVFCNTVESCRSVENLLNRKDrrgrvFEVLAYHSAMTPEARNANLQIFAKgrkgdnneDVDYVLICTdrAARGVDFDEAPVNHCVVFDFPKDPAEYVRRVGRTARAGRIGTSTV 685
                 7999************************9654422222223333667775.556899997222256778665555555544400144566777889999*********98732456678*************9855.67899*****************************99999998722224666543377888888888889999888876111111111456889999999********999888888888776433344799*******************75333322213345888884457888889999**********************999998766554 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.4e-09   1.1e-06     127     296 ..     460     649 ..     342     688 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.4e-09
   TIGR01587 127 vliiDEvhaye.eytkal.llallevlk.dvdvkillmsAtlp....kllkeylekielveenealdlke..........ekrfenqrisliekdkleeisslerlleal..kkekkvliivNtVdrAqelyqklkekapee...eiiLlHsrftekdrekkEaellkelkk.....nekfvivaTQviEvslDisv 296
                  +++DEv+++  ++t +  l ++ e++    + +++  +Atlp    + +  +++ +  v+ + +  l +           +       s +++d  ++++ +  ll+al  +  ++ l+++NtV+  + + + l+ k       e++ +Hs +t++ r+    +  ++ +k      +++v++ T  +  ++D++ 
  MMETSP1061-20121228|2942_1 460 SIVLDEVDILMiDETFGPqLRTVGEAAPlLDQTQFIFVTATLPdsivETITSEFPGVVQVKGPGLHRLAPslkenlvdvsVPSD-----SNRNEDLCFDVKAKA-LLKALrqNRCRRTLVFCNTVESCRSVENLLNRKDRRGrvfEVLAYHSAMTPEARNAN-LQIFAKGRKgdnneDVDYVLICTDRAARGVDFDE 649
                 599****9753245555537777777776667789********76666666666666666666655555565555433331222.....233444455555555.4555411456799********99999888876655543347*************999.677777777999877889*************993 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.6e-08   2.1e-05      22     331 ..     335     688 ..     324     720 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.6e-08
   TIGR00614  22 avlegrdalvvmatGgGksLCy.........qlpavvsdgl..tlvisPLisLmeDqvlqL....kasdisatlLnsaqskeeakevladl...kdgklkllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilkl....Lklkkpqv..titsfdRpnlkyeveekks...kiledllkfiv........kefkgksGiiYClsrkkveqvaaeLqkkg.....laaaaYhagleesarkevqkkflr.......deiq.vvvat..vafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfya 331
                  +l+g+ ++v   tG Gk   y         q p++  +g    lv++P   L  Dq++ +     +s+ s  ++  +   + ++++  ++   +     +l  tP ++s+  +  ++  + +++  i++De+  +      f ++ +++g     l +  +i +tat  +s+ e i++     +++k p     + s   + +  +v    +   ++ +d+    +        ++ + +  +++C++ +++ +v + L++k+      + +aYh+ +  +ar+   + f +       ++++ v++ t   a G+  + + v + + ++ pk+  +Y   +GR  R g + ++++f  
  MMETSP1061-20121228|2942_1 335 QILSGKHTIVADQTGSGKTCAYlipcllraiQTPPIKQNGSpkVLVLAPTAEL-ADQIQTVcskiSQSGPSFNTMVVTANGKYTTSIRDQIrmiQRKPADVLISTPGRISTILRTRNSGLDLSNVQSIVLDEVDIL-MIDETFGPQLRTVGEAAPLLDQTQFIFVTATLPDSIVETITSEfpgvVQVKGPGLhrLAPSLKENLVDVSVPSDSNrneDLCFDV----KakallkalRQNRCRRTLVFCNTVESCRSVENLLNRKDrrgrvFEVLAYHSAMTPEARNANLQIFAKgrkgdnnEDVDyVLICTdrAARGVDFDEAPVNHCVVFDFPKDPAEYVRRVGRTARAGRIGTSTVFAY 688
                 57899999999999999999882222223333344444443224788887665.6888754111144444433333333333366777777333444456888899999887655544337889999999999855.567899999999999999999999999***9999999999986222246666544103444444444455543332233455554....33333456656677777**********99999998875333446899***********98877776323343223454244555447999********************************999988888744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.50
# Mc/sec: 1971.92
//
Query:       MMETSP1061-20121228|2948_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 776.10
//
Query:       MMETSP1061-20121228|2951_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 557.29
//
Query:       MMETSP1061-20121228|2949_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 749.04
//
Query:       MMETSP1061-20121228|2955_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.50
# Mc/sec: 1280.29
//
Query:       MMETSP1061-20121228|2957_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 1385.89
//
Query:       MMETSP1061-20121228|2945_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 1955.39
//
Query:       MMETSP1061-20121228|2958_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1571.87
//
Query:       MMETSP1061-20121228|2962_1  [L=771]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.9   0.0      0.041   11.5   0.0    1.7  1  TIGR03765 ICE_PFL_4695: integrating conjugative element protein, PFL_4695 family


Domain annotation for each model (and alignments):
>> TIGR03765  ICE_PFL_4695: integrating conjugative element protein, PFL_4695 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     1e-05     0.041      40      91 ..     261     312 ..     253     322 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1e-05
   TIGR03765  40 LkenaeeLkelqAvGlvvnvetaealeelrelapglellpvsgddlaerlgl 91 
                 ++++a++L +++  G+    ++ ++l+elre+ +    +p+s+d+l e+l  
  MMETSP1061-20121228|2962_1 261 VERHARTLVDMENSGFAFMLKDDTKLSELREMYTLFARVPTSVDNLREALAE 312
                 67999*****************************************999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.47
# Mc/sec: 2165.18
//
Query:       MMETSP1061-20121228|2965_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 757.50
//
Query:       MMETSP1061-20121228|2963_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1342.52
//
Query:       MMETSP1061-20121228|2960_1  [L=1394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-08   30.9   0.0    5.8e-08   30.0   0.0    1.5  1  TIGR02651 RNase_Z: ribonuclease Z
  ------ inclusion threshold ------
      0.016   11.5   0.0      0.024   10.9   0.0    1.1  1  TIGR00649 MG423: conserved hypothetical protein
      0.031   10.9   0.2        0.3    7.7   0.1    2.0  1  TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR02651  RNase_Z: ribonuclease Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   4.2e-11   5.8e-08       2     160 ..     540     693 ..     539     734 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 4.2e-11
   TIGR02651   2 itfLGtggavPtkeRnlssialklegeliLfDcGEgtQrqllkskisfkkidkIfitHlHgDHilGLpGLlstlslqerkepLtiygPkgikefiekllevsktklnyeikvkeieekke.evleeekfkvealeldHsveslgYrleekdkpgkldrek 160
                 +t+LG + +   ++  +s+++l ++g+ +++D+       l  ++i+++ i  I+itH+H DH  G    +      + +  + i  P   k+fi+k  ++s  + +   + +  ++    + l++++ + + +   Hs++++g+r+e++ +   ++ + 
  MMETSP1061-20121228|2960_1 540 VTILGNSHGF-DPSGSVSGYVLWINGRGLMIDPPPYASATLELEGIRPRTIVGIIITHTHSDHDAGAFQKV-----LTGSPVVVITTPTIYKSFIRKYAALSSLNPALLRHCHRYKPAIIgQDLRFQGATFKFFYSLHSIPCIGFRVEWRGRSIIFSGDH 693
                 5677766554.23347999*********************************************9965433.....3444467789999999*****999999999999899998876548778999999*******************98876666555 PP

>> TIGR00649  MG423: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.7e-05     0.024      58     181 ..     588     713 ..     583     760 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.7e-05
   TIGR00649  58 kvkgivlthghedh.iGaveyllkkleippiygtkltialiksklkekklnvktdlkeinekeivels.....eniaiefirvthSipdSvglalhTpeGsivyagDFkfdntpviaeeadlkklaelgk 181
                  + gi++th h dh  Ga ++ l    +++i ++++  + i++    + ln    l+  ++ ++  ++     +  + +f+ + hSip  +g+ ++    si+++gD+   ++pv+ ++ + k +  +g+
  MMETSP1061-20121228|2960_1 588 TIVGIIITHTHSDHdAGAFQKVLTGSPVVVITTPTIYKSFIRKYAALSSLNP-ALLRHCHRYKPAIIGqdlrfQGATFKFFYSLHSIP-CIGFRVEWRGRSIIFSGDHL--HDPVLITKLQTKGILSKGR 713
                 599**********978*********999977777788888876544444432.33555555555444433334778999*******99.68888888888999999974..5566656666666655555 PP

>> TIGR04122  Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.1   0.00022       0.3      27     110 ..     592     694 ..     584     702 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00022
   TIGR04122  27 AlitHgHsDHaraGhkkylateetlailrlRlGed...................ieletveygeeveingvkvslhpaGHvlGsaqvrleykgevivvsGDyk 110
                  +itH+HsDH     +k+l+ +  + i    + ++                    + +   +g+ ++++g++++++ + H +     r+e++g+ i++sGD+ 
  MMETSP1061-20121228|2960_1 592 IIITHTHSDHDAGAFQKVLTGSPVVVITTPTIYKSfirkyaalsslnpallrhcHRYKPAIIGQDLRFQGATFKFFYSLHSIPCIGFRVEWRGRSIIFSGDHL 694
                 5899999999887777777665444333222111111111222334444443333445556788889999999999999999999999999999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.12s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 4278.90
//
Query:       MMETSP1061-20121228|2967_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 385.81
//
Query:       MMETSP1061-20121228|2961_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-58  193.6   0.0    1.1e-57  193.2   0.0    1.1  1  TIGR00127 nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent
      0.003   14.5   0.0     0.0044   13.9   0.0    1.3  1  TIGR00169 leuB: 3-isopropylmalate dehydrogenase
  ------ inclusion threshold ------
      0.039   11.0   0.0      0.061   10.4   0.0    1.4  1  TIGR02088 LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases


Domain annotation for each model (and alignments):
>> TIGR00127  nadp_idh_euk: isocitrate dehydrogenase, NADP-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.2   0.0   8.3e-61   1.1e-57       7     406 ..      57     466 ..      53     469 .. 0.85

  Alignments for each domain:
  == domain 1    score: 193.2 bits;  conditional E-value: 8.3e-61
   TIGR00127   7 npvveldgdemtriiwelikdklilpyleld.lkyydlsvesrdatndkvtkdaaeaikkynvavkcatitpdearvkefklkkmwkspngtirnilgg.tvfrepiiikriprlvprwekpiiigrhafgdqykatdvvvpgpgklklvykpkdgaekvdlkvydyeeeggvalamyntdesiedfakaslklalekklplylstkntilkkydgrfkdifqevyekqykskfealgiwye......hrliddmvaqalk.skggyilalknydgdvqsdivaqgfgslglmtsvlv..tpdgktv.eaeaahgtvtrhyrkyqkgeetstnsiasifawsrgllkrakldnta...elvkfaeilesatietveegimtkdlalilkksklersayltteefldaveerlkkk 406
                  p+v + g+emt    +li dk i py ++   + ydls + rd+t+dkv +da ea k+ +   k  titp   +v+e+ l k + spng++r   +g t+ r++i ik i     +++ p++  rha g +y a    v g+g l  +y p+dg+ +  +   d ++e  v ++ +n  + ++d+a+  +k  le+k++ y+ tk+t++k  +g f   ++e+++k+yk+ f + g+         h + d    q+++ ++gg+ +a +nydgd+ +d +aq + s g++ts lv    dg  + e ea+hgtv+  +  +  g+ets n++  + a    + + a ld +    + +k+a +l+ +      +  m   +    +  +++  +  tte+f+ +v+ rl++ 
  MMETSP1061-20121228|2961_1  57 PPMVYISGEEMTHYASNLIVDKWIKPYFDISaWETYDLSCKARDETDDKVLHDAVEAGKRVGAIFKEPTITPSAIQVQEMGLSKAFGSPNGAMRRGWNGiTISRDTIHIKGIE---LGYKNPVLFERHAVGGEYGAGWDQV-GEGTLLTTYLPSDGSAPFVVDKRDLTDENNVVVVYHNPYDNVKDLAHLFFKRCLEHKVTPYVVTKKTVFKWQEG-FWATMKEIFDKEYKDTFLEEGLLERsggelvHLISDAATMQLIRwTDGGFGMAAHNYDGDMLTDQIAQVHRSPGFITSNLVgvNDDGSLIkEFEASHGTVSDLWHDHLAGKETSLNPLGLVEAMIGAMQHAAMLDAKKnpdDEAKLATKLKIMNFTETLRVAMHNTFRYGQGTRDMSGPSGFTTEDFIAKVAWRLQRY 466
                 699**************************973589***********************************************************999886899****999986...599***************9985554.89*******************************************************************98887.77889999999999999877775432222215555555667776579*******************************886225789877578*************************99999999999999998654111345555555555444444455666666666666667777788999999998888875 PP

>> TIGR00169  leuB: 3-isopropylmalate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.2e-06    0.0044     213     312 ..     297     399 ..     228     434 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.2e-06
   TIGR00169 213 elehlyiDnaamqLvksPeqldvvvtsnlfGDilsDeasvitGslGlLPsaslss....kglalfepvhgsapdiagkgianpiaailsaalllryslnleeaa 312
                 el hl+ D+a+mqL++  +    + ++n  GD+l D+ + +  s G++ s  ++     +  + fe+ hg+  d+  +++a   + +  + l+ +  +++ ++a
  MMETSP1061-20121228|2961_1 297 ELVHLISDAATMQLIRWTDGGFGMAAHNYDGDMLTDQIAQVHRSPGFITSNLVGVnddgSLIKEFEASHGTVSDLWHDHLAGKETSLNPLGLV-EAMIGAMQHA 399
                 6889999*********9887777899************************977655555566678999*998876544444444433333322.2222222222 PP

>> TIGR02088  LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   4.5e-05     0.061     189     282 ..     293     397 ..     247     459 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.5e-05
   TIGR02088 189 ekgvevedllvdsaaiklvkdPekfdvivttnvfGdilsdlaaalvGslGlaPsaniG..dkkal...fePvhGsapdi.....aGkGia.nPlaailsvamlld 282
                 + g e+  l+ d+a+++l++  +    + ++n  Gd+l+d+ a++  s G++ s  +G  d+ +l   fe  hG+  d+     aGk  + nPl+ + ++   ++
  MMETSP1061-20121228|2961_1 293 RSGGELVHLISDAATMQLIRWTDGGFGMAAHNYDGDMLTDQIAQVHRSPGFITSNLVGvnDDGSLikeFEASHGTVSDLwhdhlAGKETSlNPLGLVEAMIGAMQ 397
                 55556777889********988876667899***********************988755666665669******999533334888664488877655443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 2239.69
//
Query:       MMETSP1061-20121228|2968_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         8  (0.00195027); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 438.20
//
Query:       MMETSP1061-20121228|2971_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-07   27.9   0.4    3.1e-07   27.9   0.3    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    8.2e-05   19.0   1.1    8.2e-05   19.0   0.7    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
      0.011   13.7   0.2      0.011   13.6   0.2    1.1  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.3   2.2e-10   3.1e-07      13      37 ..      12      36 ..       9      55 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 2.2e-10
   TIGR02349 13 seeeikkAYrklakkyHPDrnkgek 37
                s++ei+kAYrk+a+kyHPD++  +k
  MMETSP1061-20121228|2971_1 12 SNKEIRKAYRKQAQKYHPDKQISKK 36
                689****************987544 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.7     6e-08   8.2e-05      16      35 ..      13      32 ..       9      58 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 6e-08
   TIGR03835 16 eqeikkafrkLakkyhPDrn 35
                ++ei+ka+rk a+kyhPD+ 
  MMETSP1061-20121228|2971_1 13 NKEIRKAYRKQAQKYHPDKQ 32
                78****************85 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.2   8.4e-06     0.011       4      29 ..      12      39 ..      10      55 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8.4e-06
   TIGR00714  4 DekaLrkryrklQkqyHPD..vsksaqe 29
                 +k +rk yrk  ++yHPD  +sk++  
  MMETSP1061-20121228|2971_1 12 SNKEIRKAYRKQAQKYHPDkqISKKKPS 39
                67899**************765555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.32
# Mc/sec: 247.48
//
Query:       MMETSP1061-20121228|2975_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 391.84
//
Query:       MMETSP1061-20121228|2980_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.36
# Mc/sec: 296.98
//
Query:       MMETSP1061-20121228|2981_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|2983_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0097   13.4   0.0     0.0097   13.4   0.0    1.2  1  TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit


Domain annotation for each model (and alignments):
>> TIGR01938  nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.4e-06    0.0097       6      47 ..       4      45 ..       1     101 [. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.4e-06
   TIGR01938  6 ytilvilvlslvasvllatvavvLkpiqeeaallDkqkqila 47
                 +++v++v+++++++++a v+ v  + +++ ++lD   ++l 
  MMETSP1061-20121228|2983_1  4 VVVVVVVVVVVFVAIFVAVVVFVTGAPDQDSHHLDAVISVLV 45
                57889999999*************999999999998777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       400  (0.0975134); expected 82.0 (0.02)
Passed bias filter:                      278  (0.0677718); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.42
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|2982_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1674.90
//
Query:       MMETSP1061-20121228|2979_1  [L=718]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-30  103.1   0.0    9.5e-30  101.7   0.0    1.6  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    7.8e-20   69.3   0.0    1.8e-19   68.1   0.0    1.6  2  TIGR00742 yjbN: tRNA dihydrouridine synthase A
    2.7e-06   24.5   0.0    4.3e-06   23.8   0.0    1.2  1  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.7   0.0   6.9e-33   9.5e-30       9     231 ..     159     401 ..     154     404 .. 0.90

  Alignments for each domain:
  == domain 1    score: 101.7 bits;  conditional E-value: 6.9e-33
   TIGR00737   9 rvvlaPlagvtdlafRrlvkeyeaglvvsEmvssealveksektkklleiaedekpisvQlagsdpdvmaeaAkiaeelgadiiDlNmGCPvkkitkkgaGsallkepe..liekivkavveavevPVTvKiRiGwdeehinveeaariaedaGaqavalHgRTraqly.......eGeanwdiiarvkqavk..............iPVignGDitspedAkamLeetgadgvligRgalGkPwl 231
                 r ++aP+ g ++l+fR l+++y+a lv++ m+ +e+   ++e  +   +++   +p     a  dp + a+aA++ae    d iDlN+GCP       + Gs ll  ++  l+  +v+++ +av++P+ vKiR+ +d+ +  + e+ + + daGa+ va+H+R ra ++       +G+a +d+++r+++ +                  ++nG   + +d  + Le t adg++ + g l +P l
  MMETSP1061-20121228|2979_1 159 RYIVAPMVGASELPFRLLCRKYGAQLVYTPMMIAEQFAASEEYRRTEFQTTPFDRPLVCHFAANDPREFAAAARLAE-PHCDAIDLNLGCPQRTAYAGHFGSYLLDAKDrpLVLDMVRTASRAVSIPIFVKIRL-LDTYEA-TLELCKQLFDAGASLVAVHARYRASFHrkgpgarDGPALLDQVKRLREDLDdddddddddsfyrhKRLVTNGNTVTYDDVVTNLEFTRADGIMSAEGILDNPAL 401
                 6799*************************************9999999999***********************886.578***********************965542289********************8.666665.568899999***************9984444444599************99999999999987777899******************************99966 PP

>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.86   1.2e+03      56      91 ..      28      65 ..      15      75 .. 0.56
   2 !   68.1   0.0   1.3e-22   1.8e-19       2     164 ..     159     319 ..     158     347 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.86
   TIGR00742 56 Pvalqlggsdpedlakcaklaee..fgydeinlnvGcP 91
                P+ l++   +++   +  k+ ++    y +in+n+   
  MMETSP1061-20121228|2979_1 28 PIPLRVDKRKQHRHSHYSKVQHStaQHYINININININ 65
                66666666666665555666555224455555555444 PP

  == domain 2    score: 68.1 bits;  conditional E-value: 1.3e-22
   TIGR00742   2 klsvaPmlditdrhfryllrllskkvllytemvtakaiihgdkkkllkfs..eeekPvalqlggsdpedlakcaklaeefgydeinlnvGcPsdrvqngnfGaclmanad..lvadivkamkeaveiPvtvktriGideldsyeelvdfveivsdkGikefivhark 164
                 +  vaPm+  ++  fr l r++  + l+yt+m+ a+    +++++  +f+  + ++P+   ++++dp++ a +a+lae +  d i+ln+GcP      g fG+ l+   d  lv d+v++   av+iP+ vk r+    ld+ye   ++ +++ d+G     vhar 
  MMETSP1061-20121228|2979_1 159 RYIVAPMVGASELPFRLLCRKYGAQ-LVYTPMMIAEQFAASEEYRRTEFQttPFDRPLVCHFAANDPREFAAAARLAEPH-CDAIDLNLGCPQRTAYAGHFGSYLLDAKDrpLVLDMVRTASRAVSIPIFVKIRL----LDTYEATLELCKQLFDAGASLVAVHARY 319
                 5679*****************9865.89**********99999888877622679**********************975.7***********************98766458*******************877....8*************************95 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   3.2e-09   4.3e-06      84     186 ..     206     313 ..     191     321 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 3.2e-09
   TIGR01037  84 kvreevdtkliasvyGeseeefaevaeklekadkyvdaleLnvsCPhvkgaGieiG......qdpelsaevvkavkekvdkPvlak..LsPnvtdivelakaveeaGaDgl 186
                  +++ +d++l+   + +++ efa +a+  e   ++ da++Ln+ CP+  ++  ++G      +d  l+ ++v     +v +P+++k  L    +  +el k + +aGa  +
  MMETSP1061-20121228|2979_1 206 FQTTPFDRPLVCHFAANDPREFAAAARLAE---PHCDAIDLNLGCPQRTAYAGHFGsylldaKDRPLVLDMVRTASRAVSIPIFVKirLLDTYEATLELCKQLFDAGASLV 313
                 344567888**************9999888...88***************999999444444577899999**************93345677888999999999999755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (718 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.20s 00:00:00.54 Elapsed: 00:00:00.59
# Mc/sec: 1606.24
//
Query:       MMETSP1061-20121228|2988_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.22s 00:00:00.39 Elapsed: 00:00:00.48
# Mc/sec: 932.17
//
Query:       MMETSP1061-20121228|2985_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1497.39
//
Query:       MMETSP1061-20121228|2987_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-71  239.0   0.0    2.1e-71  238.6   0.0    1.1  1  TIGR00048 TIGR00048: 23S rRNA m2A2503 methyltransferase
     0.0037   14.9   0.0     0.0079   13.8   0.0    1.5  1  TIGR04038 tatD_link_rSAM: radical SAM protein, TatD family-associated
  ------ inclusion threshold ------
      0.045   10.3   0.1      0.071    9.7   0.1    1.2  1  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family


Domain annotation for each model (and alignments):
>> TIGR00048  TIGR00048: 23S rRNA m2A2503 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.6   0.0   1.5e-74   2.1e-71      72     345 ..     194     477 ..     184     485 .. 0.89

  Alignments for each domain:
  == domain 1    score: 238.6 bits;  conditional E-value: 1.5e-74
   TIGR00048  72 aveqesaDgtkkyllkladgqtietvllkeed.ratvCvssqvGCaleCtfCatakgGfkrnLeaseiidqvlkvkkivevteer.vsnvvlmGmGePllnlnevvkaleilnddvglgiskrritistsGvvpk.idkladkkldvalaisLhapndelrselvPinkkynletlleevrkyle...ksnkrvtfeyvllddvnDqvehaeeLaelLk.......gvkckvnLipfnpveeadyersseeridrfakvLkskgltvtirksrgddidaaCGqLrak 345
                 + + +s+Dgt+k llkl dg ++etv+++++  r t+C+ssqvGC+ +CtfCat+k G+ rnL+a+ei++q++ ++k   + +   vsn+v+mGmGeP +n+++vv+a + l +   +g+++r++ ist+  +p+   +la+      la s+ha+ d+lr++lvP  k y + +l +     l     +++  ++e  l+ dvnD +eha+++ae ++       g+k +vnLipfn + ++ y+++  e +++f k L+skg+ + +r +rgd+  +aCGqL   
  MMETSP1061-20121228|2987_1 194 SFVSRSSDGTTKLLLKLSDGLEVETVIIPMKGgRSTLCISSQVGCRQGCTFCATGKMGILRNLTADEILAQMFYAQKLCRLEDLPpVSNIVFMGMGEPSDNMPNVVRAAKTLTTRPFFGLAARKVIISTVAPTPEcFMELAK--APCVLAWSVHAVRDDLRKKLVPTTK-YSMAELRQGLIDALLtrpVNGRTCMLEVALMRDVNDRTEHADDIAEFVRvmvdqvpGIKVHVNLIPFNDIGQSLYQKPLDEDVKAFLKHLQSKGVCTHVRTTRGDEKTSACGQLATT 477
                 56789************************996379********************************************9888777*******************************************9866652789999..7889******************875.77777655543333301156889********************998655444444489********************************************************544 PP

>> TIGR04038  tatD_link_rSAM: radical SAM protein, TatD family-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   5.8e-06    0.0079      16      87 ..     236     308 ..     227     315 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.8e-06
   TIGR04038  16 nrCtlaCqfCikekekevkg..yelklekepsveeviaaikdlkkyeEvvFcGyGepllrlevvkevakaikek 87 
                   C + C+fC+  k   +++   +  l++   ++ +   ++dl  ++++vF G Gep  ++  v+  ak++ ++
  MMETSP1061-20121228|2987_1 236 VGCRQGCTFCATGKMGILRNltADEILAQMFYAQKL-CRLEDLPPVSNIVFMGMGEPSDNMPNVVRAAKTLTTR 308
                 5699******99986666541133446666666665.568*************************999988765 PP

>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   5.2e-05     0.071     137     176 ..     226     264 ..     195     272 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 5.2e-05
   TIGR00089 137 eklrafikiqeGCdkkCtyCivpsaRGrerSrslekilee 176
                 ++++ +i+ q GC++ Ct+C++  + G  r  + ++il++
  MMETSP1061-20121228|2987_1 226 GRSTLCISSQVGCRQGCTFCATGKM-GILRNLTADEILAQ 264
                 66777888999*********99765.77777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2147.02
//
Query:       MMETSP1061-20121228|2991_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-17   60.6   0.1    7.6e-17   59.4   0.1    1.6  1  TIGR00436 era: GTP-binding protein Era
  ------ inclusion threshold ------
      0.012   13.3   0.4       0.95    7.0   0.6    2.2  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.1   3.7e-20   7.6e-17     120     270 .]      57     210 ..       2     210 .. 0.84

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 3.7e-20
   TIGR00436 120 kekdkllelidkeasllefkeiveisalkgenveelkai.veaklregpfyypedyvtdqeerFkisEiiREkilkllkeEiPysvaveieekkln.ekgslkiaalilVeresQKkiiiGkk.gkkikaiGieaRkkleklfdakvflelfVk 270
                   ++++ +++d  a+++e+  ++ +salk++ ++ l +  +    +  ++  +    t+ +   ++ E+iREki + +++E+P+ v+     ++    kg + i+  ++V  +s +k+++G   gk +k+i + aR++leklf+++v l+l+Vk
  MMETSP1061-20121228|2991_1  57 DRFQQEGREFDFDAQMEESPIVFYVSALKQDGTDDLLEHlLDLATPSREWPVQPGRATNMTTLEQVQEVIREKIYRSTHKEVPHAVQQVNRLFRRIpSKGGVVIHQDLVVFTKSHQKLVLGSGgGKTLKRIRESARHDLEKLFGCDVALHLHVK 210
                 456777778888888888889999*******9998765515556666677777788899999999*******************88644344444369***********************962689**************************8 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.6   0.00046      0.95      99     130 ..       8      38 ..       2      54 .. 0.78
   2 ?    3.6   0.0    0.0053        11     102     162 ..      64     126 ..      53     128 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00046
   TIGR00231  99 kqtkeiiheakkkgvpiilvvnKiDlkddlkt 130
                 +  k  ++ ++++++++ +v+nK+Dl++  kt
  MMETSP1061-20121228|2991_1   8 SNNKNCNKKKTSNKSKFAIVLNKVDLVK-PKT 38 
                 667788999999**************99.333 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0053
   TIGR00231 102 keiiheakkkgvpiilvvn..KiDlkddlktkvkslfaklnaepiielsaetgknidklfklv 162
                 +e+   a+++++pi++ v+  K+D  ddl+++  +l+  +   p+ +  a +++ ++++++ +
  MMETSP1061-20121228|2991_1  64 REFDFDAQMEESPIVFYVSalKQDGTDDLLEHLLDLATPSREWPVQPGRATNMTTLEQVQEVI 126
                 555566788899999999855777777******999999999999999999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1069.57
//
Query:       MMETSP1061-20121228|2989_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 2664.75
//
Query:       MMETSP1061-20121228|3001_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 516.96
//
Query:       MMETSP1061-20121228|3006_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 1304.05
//
Query:       MMETSP1061-20121228|3003_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 1061.65
//
Query:       MMETSP1061-20121228|3007_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1170.87
//
Query:       MMETSP1061-20121228|2998_1  [L=1709]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1709 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.11s 00:00:00.82 Elapsed: 00:00:00.56
# Mc/sec: 4028.02
//
Query:       MMETSP1061-20121228|3010_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1647.73
//
Query:       MMETSP1061-20121228|3015_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.23
# Mc/sec: 619.77
//
Query:       MMETSP1061-20121228|3017_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 505.00
//
Query:       MMETSP1061-20121228|3016_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 2756.54
//
Query:       MMETSP1061-20121228|3019_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 670.94
//
Query:       MMETSP1061-20121228|3020_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       367  (0.0894686); expected 82.0 (0.02)
Passed bias filter:                      222  (0.0541199); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.76
# Mc/sec: 583.53
//
Query:       MMETSP1061-20121228|3021_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.30
# Mc/sec: 321.17
//
Query:       MMETSP1061-20121228|3022_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.36
# Mc/sec: 1528.87
//
Query:       MMETSP1061-20121228|3033_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1061-20121228|3036_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 364.54
//
Query:       MMETSP1061-20121228|3028_1  [L=808]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-242  803.9   0.2   1.3e-242  803.6   0.2    1.1  1  TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain
      2e-60  202.5   0.7    1.5e-59  199.6   0.3    2.2  2  TIGR00642 mmCoA_mut_beta: methylmalonyl-CoA mutase, small subunit
    1.8e-53  177.9   0.5    3.6e-53  176.9   0.4    1.5  1  TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain
    0.00019   19.1   0.0    0.00039   18.0   0.0    1.5  1  TIGR01501 MthylAspMutase: methylaspartate mutase, S subunit


Domain annotation for each model (and alignments):
>> TIGR00641  acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  803.6   0.2  1.3e-245  1.3e-242       3     524 ..      92     633 ..      90     637 .. 0.96

  Alignments for each domain:
  == domain 1    score: 803.6 bits;  conditional E-value: 1.3e-245
   TIGR00641   3 taegievkrlytpadleedldelekletfpGvkPfvrGvyatmyrarlwtirqyaGfstaeesnkfykrlleaGqkGlsvafdlathrGydsdnPrveGdvGkaGvaidsiedmkilfdgipldkvsvsmtingavlpilalyvvvaeeqGveke..........klaGtiqndilkeflvrntyifPPepslriiadiiaytaknlPkfnsisisGyhiqeaGatavlelaftladGieyvravle.aGldvdefaPrlsfffgigmnffeeiaklraarrlwaklvkeffnaknpkslllrthsqtsGvsltaqdpynnivrtaiealaavlGgtqslhtnsfdealalPtefsariarrtqliiaeesgvadvvdPlgGsyyvelltdeieekalkyiekieemGGmlkaieeGipkkeieeaaarkqkeideGkkvivGvnkykl....eeekevevlkvdnsevrekqiaklkklraerdeekvkealdkltkaaeke........denllalvidaararatlgeisdalkkvfgeyra 524
                 t+egie++++y   d+ +d+++ +  e +pG+ Pf+rG+yatm++ r+wtirqyaGfstae+sn fyk++l+aGq+Glsvafdl+thrGydsd+ rv GdvG+aGv+id+++dm+ilfdgi+l kvsvsmt+ngavlpila+y+ +a eq ++ e          kl+Gtiqndilkef+vrntyi+PPeps+riiadii ytak++Pk+nsisisGyh+qeaGa+a +e+aft+adG+ey++++++ a ldvd+ aPrlsff+gig+nf+ eiak+raarrlwa+ v+e fn+knpkslllrth+qtsG+slt+ +p+nnivrt+iea+aa++Ggtqslhtns+dea++lPte+sariar+tqli++ee+g++dv+dP+gGsy++e+ltde++ ka  +i+++e  GGm   i++G +k  iee+aa+kq +id+G  v+vGvnky+l    e+e++v+vlk+dn+evr+kqia+++ ++a+rde +vk+al kl k+a ++         +nll l+i  a+ar+tlge+s+al++++g+++ 
  MMETSP1061-20121228|3028_1  92 TPEGIEIQPIYW--DITHDQKDGDGPE-MPGIFPFTRGPYATMHTHRPWTIRQYAGFSTAEKSNVFYKKNLAAGQQGLSVAFDLPTHRGYDSDHERVVGDVGMAGVSIDTLQDMEILFDGIDLTKVSVSMTMNGAVLPILAFYIQTAIEQHMDGEdamdssevlaKLRGTIQNDILKEFMVRNTYIYPPEPSMRIIADIIGYTAKHMPKYNSISISGYHLQEAGADAAIEMAFTIADGLEYLQTAVDvAKLDVDKVAPRLSFFWGIGLNFYTEIAKMRAARRLWAESVEEKFNPKNPKSLLLRTHCQTSGYSLTETQPMNNIVRTTIEAIAAIQGGTQSLHTNSYDEAVGLPTEQSARIARNTQLILQEETGITDVADPWGGSYMMESLTDELYYKAKGIIDEVESKGGMTSFINNGHAKLFIEESAAKKQGRIDSGVDVVVGVNKYRLsaeeEQEERVDVLKIDNTEVRNKQIARMNDVKASRDEVAVKDALSKLEKSACSSqitssgddPNNLLHLCIACAKARCTLGEMSHALENAWGRHVP 633
                 89**********..9999999999999.************************************************************************************************************************998754322233334448*****************************************************************************9998357******************************************************************************************************************************************************************************************************6332245678****************************************998877999998779*****************************975 PP

>> TIGR00642  mmCoA_mut_beta: methylmalonyl-CoA mutase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.6   0.3   1.4e-62   1.5e-59       7     458 ..      58     553 ..      53     621 .. 0.77
   2 ?   -3.0   0.0      0.32   3.3e+02     492     577 ..     679     763 ..     664     771 .. 0.67

  Alignments for each domain:
  == domain 1    score: 199.6 bits;  conditional E-value: 1.4e-62
   TIGR00642   7 lpeasrerWedkveavLkksrrtekallgaefekkLvvrtadGfdirplYrak..Dekk..klslPgeyPfvRGtsvrrdvhdeWkvreaivadddeaet..neavLeaLe............kGvssLllr....vkksaiapdrLaa...lLsdvlLelveveldaridraa..aleallsvyakkdgada.......dklaldlglDPlkaalldg....vaePdlevlavavraaakelpalRavtvdavalhnaGatavaeLayalaagaeylrkLte.aGykaeealsrikFrlaadddqFltiaklRalRelWar.iaevfGdd.eekakarqhaetslrdvtreDpyvnlLRtslatfsaavgGadsitvlPFdvalqGlpeddFaeRiaRntqllLkeevhvgrvlDPagGsyyveeLtdslaeeaWkeFqevekaGGfskaaetesvakavdacnakRakrlatRreaitgvnefPnlgeva..........i 458
                 lp++++ +We+  ++ L ks+    +++ ++ ++  +  t +G++i+p+Y     D+k    + +Pg +Pf+RG  +    h  W +r+      +e+     ++ L+a +            +G +s   r    v+  +++ d+L++   l  ++ L+ v v +       +  a     ++ ++ dg+da        kl + +  D lk  +++     + eP + ++a+ +   ak++p++  +++ +  l++aGa a+ e+a+++a g eyl++ ++ a + ++ ++ r++F  +++ + + +iak+Ra+R+lWa  + e f  + +++   r h +ts    t++ p  n++Rt++++++a  gG +s+ +  +d a+ Glp  + + RiaRntql+L+ee+ +  v DP gGsy +e+Ltd l  +a     eve +GG++   +  + +  +++++ak+  r+    ++++gvn++   +e             
  MMETSP1061-20121228|3028_1  58 LPKTVK-EWEKLANEELAKSKS---KKVTVNSLRT-ERITPEGIEIQPIYWDIthDQKDgdGPEMPGIFPFTRGPYATMHTHRPWTIRQYAGFSTAEKSNvfYKKNLAAGQqglsvafdlpthRGYDSDHERvvgdVGMAGVSIDTLQDmeiLFDGIDLTKVSVSMTMNGAVLPilAFYIQTAIEQHMDGEDAmdssevlAKLRGTIQNDILKEFMVRNtyiyPPEPSMRIIADIIGYTAKHMPKYNSISISGYHLQEAGADAAIEMAFTIADGLEYLQTAVDvAKLDVDKVAPRLSFFWGIGLNFYTEIAKMRAARRLWAEsVEEKFNPKnPKSLLLRTHCQTSGYSLTETQPMNNIVRTTIEAIAAIQGGTQSLHTNSYDEAV-GLP-TEQSARIARNTQLILQEETGITDVADPWGGSYMMESLTDELYYKAKGIIDEVESKGGMTSFINNGHAKLFIEESAAKKQGRIDSGVDVVVGVNKYRLSAEEEqeervdvlkiD 553
                 566665.599999999997654...4555555544.4569**********87655776522578************999*********9865555444321156667665500001111111144555444422225667889999975333567888888887765554444411333344555556777762222222357788999*9999988873444679*******************************************************9945699*********************************835567776646666789**********************************************.9**.8899*******************************************************************************************876655434444444431 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.32
   TIGR00642 492 sgkrPkvllltlGtlaerlaReqFssnllaiaGieliddeGtksaeevveavkkagadvavlCssdkeYaeeaaevakaakaaGaa 577
                  g+rP++l++ +G+  +  + +  +s +    G+++   + +++  ev+  + ++  +++ + s ++ ++   + +   +k  Ga 
  MMETSP1061-20121228|3028_1 679 EGRRPRILVAKMGQDGHDRGAKVIASGFAD-LGFDVDIGPLFQTPREVALQAIDSDVHIIGVSSQAAGHRTLLPALQDELKDLGAD 763
                 689999999999998888887788877654.4666655666777777766666666666666666666666666666555555555 PP

>> TIGR00640  acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.9   0.4   3.5e-56   3.6e-53       1     124 [.     681     806 ..     681     808 .] 0.96

  Alignments for each domain:
  == domain 1    score: 176.9 bits;  conditional E-value: 3.5e-56
   TIGR00640   1 rrvrvlvakmGqdGhdrGakviataladlGfdvdvgglfqtPeeiarqaveedvdvvGvsslaaghltlvPelieeleklGredilvvvGGviPeedveelkea..GvaevfgPGtvlaeaiedvl 124
                 rr+r+lvakmGqdGhdrGakvia+++adlGfdvd+g+lfqtP+e+a qa++ dv+++Gvss aagh tl+P+l +el++lG + ++vv+GGviP++d++ l ++    a+vfgPGt++ +a+++vl
  MMETSP1061-20121228|3028_1 681 RRPRILVAKMGQDGHDRGAKVIASGFADLGFDVDIGPLFQTPREVALQAIDSDVHIIGVSSQAAGHRTLLPALQDELKDLGADHMVVVAGGVIPPQDYDYLMKEtkSCAAVFGPGTRIVDAAREVL 806
                 89**************************************************************************************************987522689*************9986 PP

>> TIGR01501  MthylAspMutase: methylaspartate mutase, S subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.8e-07   0.00039       4     101 ..     685     780 ..     682     805 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.8e-07
   TIGR01501   4 vvlGviGsdahavGnkvldralsnagfrvvnlG.vlsakeefikaaietdadailvsslyGhgeidckGlreklaeaGleaillyvGGnlvvGkqdfed 101
                 +++  +G d h  G kv+   +++ gf v ++G    +  e +  ai+ d   i vss           l+++l++ G + +++  GG +    qd++ 
  MMETSP1061-20121228|3028_1 685 ILVAKMGQDGHDRGAKVIASGFADLGFDV-DIGpLFQTPREVALQAIDSDVHIIGVSSQAAGHRTLLPALQDELKDLGADHMVVVAGGVIP--PQDYDY 780
                 778899**********************8.5662444556677789***********987666677889***************8888554..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.57
# Mc/sec: 1838.74
//
Query:       MMETSP1061-20121228|3038_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-11   39.4   0.0    7.4e-09   32.4   0.1    2.2  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    0.00089   15.6   0.1     0.0088   12.3   0.1    2.0  2  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
     0.0011   15.5   0.1     0.0036   13.7   0.1    1.7  2  TIGR00717 rpsA: ribosomal protein S1


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0013       1.7     618     642 ..      15      39 ..       9      63 .. 0.87
   2 !   32.4   0.1   5.4e-12   7.4e-09     643     681 ..      73     111 ..      68     116 .. 0.94

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0013
   TIGR03591 618 vgkvyegkvvkiadfgafvellpgk 642
                  g+++eg++ +i+++gaf ++ p  
  MMETSP1061-20121228|3038_1  15 AGEIWEGTIERIQPYGAFCSFGPAS 39 
                 79*****************998865 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 5.4e-12
   TIGR03591 643 dglvhiSelaeervekvedvlkegdevkvkvleidkkgr 681
                 +gl+hiS+l+e+rv+kvedv+ ++d+v vkvle++++++
  MMETSP1061-20121228|3038_1  73 QGLIHISQLSESRVAKVEDVVGVDDRVWVKVLEVERQEK 111
                 7**********************************9987 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.018        24     643     671 ..      10      38 ..       6      47 .. 0.90
   2 !   12.3   0.1   6.4e-06    0.0088     673     714 ..      73     110 ..      70     113 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.018
   TIGR02696 643 ptlpevgerflgtvvkttafgafvsllpg 671
                 p+ p  ge + gt+ +  ++gaf s+ p 
  MMETSP1061-20121228|3038_1  10 PSPPVAGEIWEGTIERIQPYGAFCSFGPA 38 
                 888999*******************9875 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6.4e-06
   TIGR02696 673 dgllhiseirkladgkrvekvedvlsvgekikveiadiddrg 714
                 +gl+his++   +   rv+kvedv++v +++ v++ +++ + 
  MMETSP1061-20121228|3038_1  73 QGLIHISQL---S-ESRVAKVEDVVGVDDRVWVKVLEVERQE 110
                 69*****55...4.469********************98765 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.16   2.2e+02     188     205 ..      16      33 ..      14      38 .. 0.60
   2 !   13.7   0.1   2.6e-06    0.0036     211     249 ..      73     111 ..      68     115 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.16
   TIGR00717 188 geevkGvVknitdfgafv 205
                 ge  +G + +i+++gaf 
  MMETSP1061-20121228|3038_1  16 GEIWEGTIERIQPYGAFC 33 
                 445566666666666665 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 2.6e-06
   TIGR00717 211 dgllhitdlswkrvkhPseivevgdevkvkvikvDkekk 249
                 +gl+hi++ls  rv++ +++v v+d+v vkv++v++++k
  MMETSP1061-20121228|3038_1  73 QGLIHISQLSESRVAKVEDVVGVDDRVWVKVLEVERQEK 111
                 678888888888888888888888888888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1339.89
//
Query:       MMETSP1061-20121228|3043_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1623.47
//
Query:       MMETSP1061-20121228|3035_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-12   45.2   0.1      2e-12   44.9   0.1    1.1  1  TIGR01933 hflK: HflK protein
     0.0043   14.5   0.2     0.0071   13.8   0.1    1.3  1  TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01933  hflK: HflK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.1   9.9e-16     2e-12       1     173 [.       6     177 ..       6     205 .. 0.90

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 9.9e-16
   TIGR01933   1 iyiikeaergvvlrfGkysrvlepGlnlkipfieevykvnvekvrelakeglmltkDenivevelnvqYkisdpaky..lfkvenaedslrqatdsalreviGdssldeiltegRsairedtkeelneildsydlGitvvdvnlqsarpPeevkeAFddviaAredeerlineae 173
                 +++i+ +e g++ ++G+y+r+ +pGl l +  +e+ +     +v+++   ++  tkD+  ++  + vqY++   + +   +  +n+ + +      ++r+ +   +lde ++  ++++++++k++l  +  sy  G ++++  + +  p ++vk+A ++++  +  +  + + ae
  MMETSP1061-20121228|3035_1   6 FFTISTSEVGLIEQWGRYKRLAQPGLGLIFCPMEQLVGRLSFRVQQIDVRVETKTKDNVFLTAVVSVQYQVLRENVFeaFYALTNPAQQITAHVYDVMRATLPTLELDEAFEA-KEELATSVKNALSDSFTSY--GYQILQTLITDLDPDQRVKNAMNEINSSKRLKFAVAERAE 177
                 689********************************************************************8776663379*****************************988.99***************99..78999*********************99877766666555 PP

>> TIGR01466  cobJ_cbiH: precorrin-3B C17-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   3.5e-06    0.0071      11      82 ..     119     191 ..     117     210 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.5e-06
   TIGR01466  11 eelitpeakealeeadvivgYktYlklvedlledkevvksdmk.eEleRaeeAlekakegkeValvssGDpgi 82 
                 +e++++++k+al+++ + +gY+   +l++dl +d++v+++ ++ +  +R + A+++ +eg ++  v s ++g 
  MMETSP1061-20121228|3035_1 119 KEELATSVKNALSDSFTSYGYQILQTLITDLDPDQRVKNAMNEiNSSKRLKFAVAERAEGDKILQVKSAEAGA 191
                 6788999***********************999998877754426679**************99999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 1026.58
//
Query:       MMETSP1061-20121228|3045_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 942.78
//
Query:       MMETSP1061-20121228|3044_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 2187.97
//
Query:       MMETSP1061-20121228|3048_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       345  (0.0841053); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 579.60
//
Query:       MMETSP1061-20121228|3042_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-38  129.8   0.0    5.6e-38  128.6   0.0    1.5  2  TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3


Domain annotation for each model (and alignments):
>> TIGR00186  rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       0.2   8.1e+02       4      30 ..     242     268 ..     240     274 .. 0.73
   2 !  128.6   0.0   1.4e-41   5.6e-38      31     236 ..     338     590 ..     323     592 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.2
   TIGR00186   4 vvyGknavleaLenqsrvkiskllesk 30 
                  +yG  +vl+aL   +r + +++++s+
  MMETSP1061-20121228|3042_1 242 HLYGLSSVLNALATGRRDMSTSMEKSD 268
                 69**********999666655555554 PP

  == domain 2    score: 128.6 bits;  conditional E-value: 1.4e-41
   TIGR00186  31 tkakkllqlvkkkgvtielvdkkkldkltkngnHqgivaevkpe...........ikeleledlvktakskkapllliLdeitDphNlGailRtAealgvd......gvvlkkrrsapltstvvktssGalellplvrvtnlsetltklkesgfwivgtsleaeetkyekkktk...................klaLvvGnEgkGvrklikkksDflikipmagk...............vdSLNvSVAtgillfei 236
                   a+++++l+++++v i +vdk +l+ l  n  Hqg++++   +           +++ +  dl  t    +  l l+Lde+ Dp+NlGa lR+A++lg +      gv +  ++sap  ++v+ +s+Gale +++    nl +tl++ +e gf i+g+s++  +t++  +                      ++ Lv+G+Eg+G+r+l+ k +  ++ ip +                 vdSLNvSV++gi+l+++
  MMETSP1061-20121228|3042_1 338 SAAQEVMKLAEEREVPIAYVDKGTLNVLSGNRPHQGFALRCGKLffeslsriplpTNARSGGDLTAT--PSSPTLWLVLDEVVDPQNLGALLRSAYFLGGKkknnniGVLVCSKNSAPPSPVVSASSAGALEVVDVYSTSNLPRTLNQAREDGFRIIGASISVPSTNNDDD--PpplydlqdlpvcdadgdnrPILLVLGSEGHGLRTLVAKACTEFVCIPSGMGgvepmdeddsgseagVDSLNVSVSAGIMLWHL 590
                 4689*************************************99888888887776666666667744..4445599**********************9654444558999999************************************************999933333..246889999***************************************766667***************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.87
# Mc/sec: 902.68
//
Query:       MMETSP1061-20121228|3049_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.006   13.8   0.2       0.43    7.8   0.0    2.1  2  TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit


Domain annotation for each model (and alignments):
>> TIGR02852  spore_dpaB: dipicolinic acid synthetase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0001      0.43      97     131 ..       8      42 ..       4      46 .. 0.82
   2 !    5.9   0.0   0.00038       1.6     102     129 ..      38      65 ..      35      78 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0001
   TIGR02852  97 anaitdspvlmaakatlrnnkPvvlaistndalGl 131
                 a   +d   l  a  +lrn+k vvla    d+  l
  MMETSP1061-20121228|3049_1   8 AAVNKDGWALQYASKELRNDKDVVLAAVNKDGRAL 42 
                 566677888888999***********999998766 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00038
   TIGR02852 102 dspvlmaakatlrnnkPvvlaistndal 129
                 d   l  a  +lrn+k vvla   n + 
  MMETSP1061-20121228|3049_1  38 DGRALEDASEELRNDKEVVLAAVNNRGE 65 
                 55667788999**********9988654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 573.64
//
Query:       MMETSP1061-20121228|3052_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 2964.26
//
Query:       MMETSP1061-20121228|3056_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1595.87
//
Query:       MMETSP1061-20121228|3063_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-09   34.0   0.6      3e-09   33.8   0.4    1.0  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
      4e-09   34.1   0.5    4.6e-09   33.9   0.3    1.0  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    1.2e-08   32.0   1.2    1.4e-08   31.7   0.8    1.0  1  TIGR02734 crtI_fam: phytoene desaturase
    6.6e-06   23.1   0.1    6.6e-06   23.1   0.1    1.0  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    1.2e-05   21.8   0.3    1.2e-05   21.8   0.2    1.0  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    2.2e-05   21.2   0.4    2.6e-05   20.9   0.2    1.0  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    2.4e-05   21.2   0.5    2.7e-05   21.1   0.3    1.0  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    7.2e-05   19.6   0.2    7.3e-05   19.6   0.1    1.0  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0003   17.9   0.1    0.00034   17.8   0.1    1.0  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00034   17.2   1.7    0.00041   17.0   1.2    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00038   17.6   0.9    0.00039   17.5   0.6    1.0  1  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    0.00065   16.4   2.6    0.00076   16.2   1.8    1.1  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00071   16.7   0.4    0.00079   16.5   0.3    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    0.00072   16.3   0.0    0.00075   16.2   0.0    1.0  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
     0.0011   16.0   0.1     0.0012   15.9   0.1    1.1  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0012   14.2   0.1     0.0012   14.1   0.1    1.0  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0013   15.6   0.1     0.0014   15.5   0.1    1.0  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0016   14.1   0.3     0.0018   13.9   0.2    1.0  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0022   14.7   0.5     0.0026   14.4   0.4    1.1  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
     0.0023   14.6   0.1     0.0025   14.5   0.1    1.0  1  TIGR02730 carot_isom: carotene isomerase
     0.0026   14.4   0.2     0.0028   14.3   0.2    1.0  1  TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase
     0.0032   14.1   0.3     0.0035   14.0   0.2    1.0  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
     0.0035   13.9   2.8     0.0043   13.7   1.9    1.0  1  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.006   12.9   0.1     0.0061   12.9   0.1    1.0  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0064   12.9   0.2      0.007   12.8   0.1    1.0  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0077   13.0   0.4     0.0081   13.0   0.3    1.0  1  TIGR00518 alaDH: alanine dehydrogenase
     0.0078   13.0   0.3     0.0091   12.8   0.2    1.0  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
     0.0085   13.0   2.6       0.01   12.8   1.8    1.0  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
  ------ inclusion threshold ------
       0.01   12.6   0.2       0.01   12.6   0.1    1.0  1  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
      0.011   12.1   0.8      0.013   11.9   0.6    1.0  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.012   12.1   0.5      0.013   11.9   0.4    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
      0.014   11.9   0.3      0.016   11.8   0.2    1.0  1  TIGR02731 phytoene_desat: phytoene desaturase
      0.016   12.1   1.7      0.018   12.0   1.2    1.1  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
       0.02   11.7   0.4      0.022   11.6   0.3    1.1  1  TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
      0.024   11.2   0.2      0.025   11.1   0.1    1.0  1  TIGR00551 nadB: L-aspartate oxidase
      0.027   11.1   0.2      0.027   11.1   0.1    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
      0.036   10.6   0.3      0.033   10.7   0.2    1.0  1  TIGR00194 uvrC: excinuclease ABC subunit C
      0.053   10.7   1.6      0.055   10.7   1.1    1.1  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
      0.075    9.9   1.8      0.092    9.6   1.2    1.1  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.4   2.9e-11     3e-09       2      42 ..      10      52 ..       9      58 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 2.9e-11
   TIGR00562  2 kkkvvvvGgGisGLciayalekerp..dvelvlvEakdRvGGk 42
                +++vv+vGgG+ GL++a +++         ++++E++dR+GG+
  MMETSP1061-20121228|3063_1 10 QQHVVIVGGGVGGLAVAARIAAGSDakSTKITVLEKNDRIGGR 52
                689*****************987655599*************7 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.3   4.4e-11   4.6e-09       1      43 [.      13      59 ..      13      66 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 4.4e-11
   TIGR03467  1 vvvvGgGlAGLaAAveLaraG....vrvtllEarrqlGGRarsfedg 43
                vv+vGgG+ GLa A+++a+       ++t+lE   ++GGR++sf+ +
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIAAGSdaksTKITVLEKNDRIGGRCGSFWVD 59
                89**************9975566679******************976 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.8   1.3e-10   1.4e-08       1      40 [.      13      56 ..      13      60 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.3e-10
   TIGR02734  1 avViGaGlgGLAlAirLaa....aGievtvlekrdkpGGRagvl 40
                +v++G+G+gGLA+A+r+aa    + +++tvlek+d++GGR g++
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIAAgsdaKSTKITVLEKNDRIGGRCGSF 56
                689**************8633326799*************9985 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   6.2e-08   6.6e-06       3      38 ..      13      48 ..      11      67 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 6.2e-08
   TIGR01989  3 vvivGgGlvGlalAaalkknpslkdkkvllldavda 38
                vvivGgG+ Gla+Aa +++ +  k+ k+++l+ +d 
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIAAGSDAKSTKITVLEKNDR 48
                9*******************************9775 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.2   1.1e-07   1.2e-05     375     418 ..       6      53 ..       1      63 [. 0.79

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.1e-07
   TIGR03997 375 karrrkkvlvvGgGPaGle.aaataa...rrGhrvtllereeelGGqv 418
                 + +++++v++vGgG +Gl+ aa+ aa   ++  ++t+le+++++GG+ 
  MMETSP1061-20121228|3063_1   6 QQQQQQHVVIVGGGVGGLAvAARIAAgsdAKSTKITVLEKNDRIGGRC 53 
                 4566799***********8355556544457899************86 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.2   2.5e-07   2.6e-05       2      43 ..      11      56 ..      10      60 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 2.5e-07
   TIGR02733  2 ksvvviGaGiaGltaaallak....rGlevtlleaaaqvGGCastf 43
                ++vv++G+G++Gl+ aa +a+    +  ++t+le++  +GG  + f
  MMETSP1061-20121228|3063_1 11 QHVVIVGGGVGGLAVAARIAAgsdaKSTKITVLEKNDRIGGRCGSF 56
                89*************99998533337899************88887 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.3   2.5e-07   2.7e-05     138     180 ..       5      51 ..       1      56 [. 0.80

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.5e-07
   TIGR01317 138 pkkrtGkkvavvGsGPaGlaaadqlnraG....htvtvferedrvGG 180
                  +++  ++v +vG G  Gla a++++        ++tv e++dr+GG
  MMETSP1061-20121228|3063_1   5 QQQQQQQHVVIVGGGVGGLAVAARIAAGSdaksTKITVLEKNDRIGG 51 
                 56677899***************9985431112579**********9 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   6.9e-07   7.3e-05       1      33 [.      12      47 ..      12      64 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 6.9e-07
   TIGR01988  1 divIvGgGlvGlalAlaLassa...dlkvalveaka 33
                ++vIvGgG+ Gla+A+++a+ +   + k++++e+++
  MMETSP1061-20121228|3063_1 12 HVVIVGGGVGGLAVAARIAAGSdakSTKITVLEKND 47
                69*****************88888889999999876 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   3.2e-06   0.00034      20      59 ..       9      52 ..       2      58 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.2e-06
   TIGR00292 20 aesDviivGaGpsGLtaayylakeg....lkvvvlerklaiGGG 59
                 +  v+ivG+G  GL+ a  +a        k+ vle++  iGG 
  MMETSP1061-20121228|3063_1  9 QQQHVVIVGGGVGGLAVAARIAAGSdaksTKITVLEKNDRIGGR 52
                5678***********988888864445569********999995 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.2   3.9e-06   0.00041       3      39 ..      12      53 ..      10      56 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.9e-06
   TIGR01350  3 dvvviGgGpgGYvaAiraaq....lglkvalvek.eklGGtC 39
                 vv++GgG gG   A r a     + +k++++ek +++GG C
  MMETSP1061-20121228|3063_1 12 HVVIVGGGVGGLAVAARIAAgsdaKSTKITVLEKnDRIGGRC 53
                69*********9888776642222567899****899****9 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.6   3.7e-06   0.00039     137     179 ..       2      42 ..       1      55 [. 0.76

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.7e-06
   TIGR03169 137 ekakaseetkslavvGgGaagvElalalrkrlkkrglkaevsl 179
                 ++++++++++++++vGgG++g+ +a  ++   ++++ k  +++
  MMETSP1061-20121228|3063_1   2 QQQQQQQQQQHVVIVGGGVGGLAVAARIAAGSDAKSTK--ITV 42 
                 5566778888************9999888776666655..544 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   1.8   7.2e-06   0.00076       1      34 [.      13      50 ..      13      54 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 7.2e-06
   TIGR00275  1 viiiGgGaaGlmaAitaae....egakVlllEknkkig 34
                v+i+GgG  Gl  A+++a+    ++ k+++lEkn++ig
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIAAgsdaKSTKITVLEKNDRIG 50
                79*********999888876777899**********98 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   7.5e-06   0.00079       4      48 ..      12      61 ..       9      65 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 7.5e-06
   TIGR01421  4 dylviGGGsGGiasarr.aae...yGakallveek.klGGtcvnvGcvPk 48
                 ++++GGG GG+a a r aa      +k+ ++e++ ++GG c      Pk
  MMETSP1061-20121228|3063_1 12 HVVIVGGGVGGLAVAARiAAGsdaKSTKITVLEKNdRIGGRCGSFWVDPK 61
                57899********998834441113456678886537*****77666555 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.2e-06   0.00075      26      69 ..       6      51 ..       1      57 [. 0.78

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 7.2e-06
   TIGR01373 26 epkpeydviivGgGGhGlatayylak..ehGitnvavlekgwlGgG 69
                + +++  v+ivGgG  Gla a  +a   +   t+++vlek+   gG
  MMETSP1061-20121228|3063_1  6 QQQQQQHVVIVGGGVGGLAVAARIAAgsDAKSTKITVLEKNDRIGG 51
                5567789**************999962256689*******865555 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   1.1e-05    0.0012       2      37 ..      13      52 ..      12      64 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.1e-05
   TIGR01790  2 liviGgGlAglaiAlela....kpglrvqlieaapklpfn 37
                ++++GgG  gla+A+++a    ++  ++ ++e ++++++ 
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIAagsdAKSTKITVLEKNDRIGGR 52
                79***************9988889999****977777664 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.2e-05    0.0012     530     576 ..       3      53 ..       1      62 [. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.2e-05
   TIGR03315 530 kpqlksekhkvaviGaGPaGlsagyflar....aGlpvtvfekkekagGvv 576
                 + q+++++++v ++G+G  Gl+++  +a     + +++tv+ek++++gG +
  MMETSP1061-20121228|3063_1   3 QQQQQQQQQHVVIVGGGVGGLAVAARIAAgsdaKSTKITVLEKNDRIGGRC 53 
                 4566777779************999887522225678************87 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.3e-05    0.0014       4      40 ..      13      53 ..      10      61 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.3e-05
   TIGR00031  4 yiivGaGlsGivlae.ila...klnkrvlvvekrnhiGGnc 40
                ++ivG G+ G  +a  i+a    ++ ++ v+ek ++iGG c
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAArIAAgsdAKSTKITVLEKNDRIGGRC 53
                79********766553776222356789***********99 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   1.7e-05    0.0018     165     207 ..       7      53 ..       2      59 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.7e-05
   TIGR01372 165 vnahcDvLvvGaGpaGLa.aAraAaraGa...rvilvdeqaeaGGsl 207
                  ++   v++vG+G  GLa aAr Aa + a   ++++++++ ++GG+ 
  MMETSP1061-20121228|3063_1   7 QQQQQHVVIVGGGVGGLAvAARIAAGSDAkstKITVLEKNDRIGGRC 53 
                 4556679**********85789999876622268999*******986 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.4   2.5e-05    0.0026       2      33 ..      13      47 ..      12      52 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.5e-05
   TIGR01984  2 viivGgglvGlslAlaLsrks...klkialieaks 33
                v+ivGgg+ Gl++A  +++ s   + ki+++e+++
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIAAGSdakSTKITVLEKND 47
                9****************999988889******986 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   2.4e-05    0.0025       3      42 ..      13      56 ..      11      63 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.4e-05
   TIGR02730  3 aivigsgigglvtatqla....akgakvlvlekylipggsagyf 42
                ++++g g+ggl  a+++a    ak +k+ vlek    gg +g f
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIAagsdAKSTKITVLEKNDRIGGRCGSF 56
                7999*********9999844445999*******99999999988 PP

>> TIGR03329  Phn_aa_oxid: putative aminophosphonate oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.2   2.7e-05    0.0028      20      63 ..       6      51 ..       1      56 [. 0.73

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.7e-05
   TIGR03329 20 kgdteadvaivGGGftGlwta..illkqaepkldvlvleadlcGaG 63
                +++++ +v+ivGGG  Gl  a  i++   + + +++vle++   +G
  MMETSP1061-20121228|3063_1  6 QQQQQQHVVIVGGGVGGLAVAarIAAGSDAKSTKITVLEKNDRIGG 51
                5678899***********9883344556677889*****9644333 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   3.3e-05    0.0035       2      37 ..      13      50 ..      12      59 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.3e-05
   TIGR03385  2 ivivGgvaaGasaAsrvrRLk..kesdiivfekteivs 37
                +vivGg+ +G ++A+r+   +  k ++i+v+ek++ + 
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIAAGSdaKSTKITVLEKNDRIG 50
                8****************8764227789*****998774 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   1.9   4.1e-05    0.0043       2      37 ..      13      51 ..      12      55 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.1e-05
   TIGR01813  2 vvvvGsGlAGlsaalea...kkaglaevvvleKapviGG 37
                vv+vG G+ Gl+ a +     +a  +++ vleK + iGG
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIaagSDAKSTKITVLEKNDRIGG 51
                9**********97765411234566899**********9 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   5.8e-05    0.0061     367     411 ..       5      53 ..       1      63 [. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.8e-05
   TIGR03996 367 eraatpgdvlvvGGGpaGle.aarvla...vrGhrvtlaeasarlGGmv 411
                 ++     +v++vGGG  Gl  aar+ a   ++  ++t+ e++ r+GG  
  MMETSP1061-20121228|3063_1   5 QQQQQQQHVVIVGGGVGGLAvAARIAAgsdAKSTKITVLEKNDRIGGRC 53 
                 566677899*********974899987444678899**********975 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   6.6e-05     0.007     138     178 ..       7      51 ..       2      60 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.6e-05
   TIGR01318 138 kktgkrvaviGaGpaGlacadvlar....aGvkvvvfdrypeiGG 178
                 ++++++v ++G+G  Gla a ++a       +k++v ++ ++iGG
  MMETSP1061-20121228|3063_1   7 QQQQQHVVIVGGGVGGLAVAARIAAgsdaKSTKITVLEKNDRIGG 51 
                 678999**************999752222468999*********9 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.3   7.7e-05    0.0081     167     198 ..      10      42 ..       6      56 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.7e-05
   TIGR00518 167 agkvtiiGgGvvGtn.aaklavGlGatvtildi 198
                 + +v+i+GgGv G   aa++a G  a+ t + +
  MMETSP1061-20121228|3063_1  10 QQHVVIVGGGVGGLAvAARIAAGSDAKSTKITV 42 
                 578**********75499*****9997654433 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   8.6e-05    0.0091       2      47 ..      13      63 ..      12      66 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.6e-05
   TIGR02732  2 vaivgaglaglatavelv...d.aghevelyesrsflggkvgs.wvdkdgn 47
                v ivg g+ gla a  ++   d + +++ + e    +gg+ gs wvd + n
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIAagsDaKSTKITVLEKNDRIGGRCGSfWVDPKHN 63
                89**********9998863333246799**************956786655 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   1.8   9.5e-05      0.01       2      37 ..      12      51 ..      11      54 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.5e-05
   TIGR03364  2 dvvvvGaGivGlahAlaaa....rrGlkVtvierssraaG 37
                 vv+vG+G+ Gla A++ a    ++  k+tv+e+++r  G
  MMETSP1061-20121228|3063_1 12 HVVIVGGGVGGLAVAARIAagsdAKSTKITVLEKNDRIGG 51
                69***********99876523336999*******998755 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   9.9e-05      0.01       3      32 ..      13      45 ..      11      62 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.9e-05
   TIGR03970  3 vlvvGaGsaGsvlaarL...sedpsatvtvlea 32
                v++vG+G  G  +aar+   s  +s+++tvle 
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIaagSDAKSTKITVLEK 45
                89**************93334456889999995 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.6   0.00012     0.013     204     248 ..       2      52 ..       1      56 [. 0.69

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
   TIGR03140 204 eeaeeekekydvlvvGgGPagaaaa.iyaa...rkGlkvalv..aeriGGq 248
                 ++++++++++ v++vGgG  g a a   aa    k  k++++   +riGG+
  MMETSP1061-20121228|3063_1   2 QQQQQQQQQQHVVIVGGGVGGLAVAaRIAAgsdAKSTKITVLekNDRIGGR 52 
                 5678899999*******9998654413333222577888887445899997 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.4   0.00012     0.013       6      40 ..      14      53 ..      10      62 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
   TIGR01424  6 fviGaGsGGvr.aarlaaalGa...kvaiae.edlvGGtc 40
                 ++G+G GG++ aar+aa + a   k+++ e +d++GG c
  MMETSP1061-20121228|3063_1 14 VIVGGGVGGLAvAARIAAGSDAkstKITVLEkNDRIGGRC 53
                689******97578999976651226788873579***99 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   0.00015     0.016       2      42 ..      13      58 ..      12      64 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00015
   TIGR02731  2 vaiagaglaglsaakyla...daghtpi.vleardvlggkvaa.wk 42
                v+i g+g+ gl++a  +a   da  t i vle++d +gg+  + w 
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIAagsDAKSTKItVLEKNDRIGGRCGSfWV 58
                99**********9988743448888877589********9865255 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.2   0.00017     0.018       1      33 [.      13      50 ..      13      56 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00017
   TIGR02352  1 vlviGgGviGlsvAveLak....rghkvtllekd.evg 33
                v+++GgGv Gl+vA ++a     +  k+t+lek+ ++g
  MMETSP1061-20121228|3063_1 13 VVIVGGGVGGLAVAARIAAgsdaKSTKITVLEKNdRIG 50
                79**************9852222667888888874555 PP

>> TIGR01133  murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   0.00021     0.022       3      42 ..       8      47 ..       6      54 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00021
   TIGR01133  3 kkmkkvvlagGGTGGifPalAvaeelrkrgvevvllGtkr 42
                ++ + vv++gGG GG+  a  +a    ++  ++++l +++
  MMETSP1061-20121228|3063_1  8 QQQQHVVIVGGGVGGLAVAARIAAGSDAKSTKITVLEKND 47
                66789***********888777777777777777776655 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00024     0.025       2      33 ..      10      46 ..       9      57 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00024
   TIGR00551  2 eadvvviGsGaagLsaalala.....ekyrvvvlska 33
                + +vv++G+G+ gL++a+++a     ++ +++vl k+
  MMETSP1061-20121228|3063_1 10 QQHVVIVGGGVGGLAVAARIAagsdaKSTKITVLEKN 46
                679*************998862221133446666665 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00026     0.027       4      35 ..      12      44 ..       9      62 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00026
   TIGR01438  4 dliviGgGsGGlaaake.aaklgakvllldfvk 35
                 ++++GgG GGla a + aa  +ak   + +++
  MMETSP1061-20121228|3063_1 12 HVVIVGGGVGGLAVAARiAAGSDAKSTKITVLE 44
                5799********976652777888876665544 PP

>> TIGR00194  uvrC: excinuclease ABC subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00032     0.033     443     491 ..       3      50 ..       1      67 [. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00032
   TIGR00194 443 lkknklplpdliliDGGkgQlnaalevlkslkvvnkviviglaKakree 491
                 +++++++   ++++ GG g l++a  + + ++  ++ ++  l+K++r  
  MMETSP1061-20121228|3063_1   3 QQQQQQQQQHVVIVGGGVGGLAVAARIAAGSDA-KSTKITVLEKNDRIG 50 
                 3445555679********************999.888999999999865 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.1   0.00052     0.055      14      42 ..       3      31 ..       1      49 [. 0.68

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00052
   TIGR02356 14 egqqklleskvliiGaGgLgsavaeylaa 42
                ++qq+ ++++v+i+G G  g ava  +aa
  MMETSP1061-20121228|3063_1  3 QQQQQQQQQHVVIVGGGVGGLAVAARIAA 31
                68999999******966555555555543 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   1.2   0.00088     0.092       1      35 [.      12      50 ..      12      55 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00088
   TIGR03197  1 kvavIGaGiAgaalalsLar....rGvqvtllekdekla 35
                +v+++G+G+ g+a+a ++a+    +  ++t+lek+++++
  MMETSP1061-20121228|3063_1 12 HVVIVGGGVGGLAVAARIAAgsdaKSTKITVLEKNDRIG 50
                79***************9853333788999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       333  (0.0811799); expected 82.0 (0.02)
Passed bias filter:                      301  (0.0733788); expected 82.0 (0.02)
Passed Vit filter:                        88  (0.0214529); expected 4.1 (0.001)
Passed Fwd filter:                        39  (0.00950756); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 309.49
//
Query:       MMETSP1061-20121228|3061_1  [L=1199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-11   38.4   0.0    1.1e-09   34.6   0.0    2.0  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.7e-06   23.8   0.0    1.1e-05   22.8   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.5   0.0    0.0052        11       2      45 ..     190     233 ..     189     241 .. 0.90
   2 !   34.6   0.0   5.2e-13   1.1e-09      45     196 ..     316     467 ..     312     493 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.0052
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlD 45 
                 t++ va+k +R  +  +        Rei++ + L hPn+v++++
  MMETSP1061-20121228|3061_1 190 TNEIVAMKKIRVHHGAHWGMPPTVIREIKILKSLVHPNLVRMVE 233
                 888899999999999999999999*****************986 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 5.2e-13
   TIGR03903  45 DsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGig.aLlpgvedadeat.ltrt.tevlGsPaYaaPeqLRgep.vtaksDlYaWGLivleCLtGkrvvqGasvae 196
                 D  e+  g +F v eyv+   l  +L      +  e   +  q L+ala  h++  vhRD+k  ni++   d +   k+ DFG++ ++ p   d  +++  t++ t+ + +  Y  Pe L g +   ++ D+++ G i+ e + G++  +G++  e
  MMETSP1061-20121228|3061_1 316 DARESYKGNIFLVLEYVQ-HDLTGLLDVAYQFSEVEIKSIFRQLLEALAYMHEQKYVHRDIKSSNILI---DRNYRLKLADFGLArSIEPPLLDKLHERgNTQEfTNKVITLWYRPPELLLGATrYGPAVDIWSAGCILAELVLGRPLFTGKTEME 467
                 556677899********8.6799********************************************9...667788999****8445555544333321343326778899*******999762689***********************98665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   5.3e-09   1.1e-05      74     138 ..     327     398 ..     308     406 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 5.3e-09
   TIGR03724  74 ivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                 +v+ey++ +    ll+   +       ++++++ e+++ +H+++ vh D+  sNi++ ++ +l l DfGL++ 
  MMETSP1061-20121228|3061_1 327 LVLEYVQHDL-TGLLDVAYQfseveikSIFRQLLEALAYMHEQKYVHRDIKSSNILIdRNYRLKLADFGLARS 398
                 6666666532.2222221112223446999***************************668899*******975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.82u 0.17s 00:00:00.99 Elapsed: 00:00:00.85
# Mc/sec: 1861.82
//
Query:       MMETSP1061-20121228|3068_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.6   0.1      0.019   12.5   0.0    1.0  1  TIGR00017 cmk: cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   4.5e-06     0.019      74     143 ..       4      76 ..       1      83 [. 0.68

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.5e-06
   TIGR00017  74 evevllngedvseairtqevanlvskvaaeqkvRea.llkkqrklakn...dglvadGRDigtvvlpnaelKif 143
                 + + +++++d+sea++ ++v+  +s + ++ ++ +  + + ++++ k+   +  v+ GR+ g  v  +++  i+
  MMETSP1061-20121228|3068_1   4 QRKAVIKNADMSEAMQQEAVDI-ASIALSKYNIEKDvAAHIKKEFDKKynpTWHVIVGRNFGSYVTHETKHFIY 76 
                 4577899*******99988864.444444444444304444556666633366899*********998875554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 516.48
//
Query:       MMETSP1061-20121228|3071_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   13.1   0.0     0.0068   12.5   0.0    1.2  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
  ------ inclusion threshold ------
      0.021   11.1   0.0      0.035   10.3   0.0    1.2  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ


Domain annotation for each model (and alignments):
>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.3e-06    0.0068      52      79 ..     211     238 ..     200     250 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.3e-06
   TIGR03817  52 ehvvvatgtasGkslayllPvlsalaed 79 
                   +vv+ +t sGk+la+l+P+ls+l+++
  MMETSP1061-20121228|3071_1 211 MGIVVSGSTGSGKTLAFLVPLLSTLSDS 238
                 4589*********************987 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.7e-05     0.035     267     321 ..     620     675 ..     617     680 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.7e-05
   TIGR01389 267 qekFleddvkvvvatvaFGmGidksdvRfvihldlPk.nlesyyqeaGRaGRDGlk 321
                  e+F e+d++v++at     G+d ++v +v  l lP  +  +y   aGR GR G+ 
  MMETSP1061-20121228|3071_1 620 MEQFKENDTTVMLATPNSVRGLDFPQVTHVYTLYLPTeDPREYVHLAGRVGRVGQT 675
                 689*********************************7256889999******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.19s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 2585.05
//
Query:       MMETSP1061-20121228|3064_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1115.8  16.8          0 1115.5  11.6    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
   7.3e-229  760.1  12.7   1.3e-228  759.2   8.8    1.3  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
   1.4e-218  725.5   3.6   1.1e-109  365.4   0.1    2.1  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
      6e-09   33.0   5.0    0.00015   18.5   0.1    4.6  4  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    8.5e-08   29.4   0.1      0.012   12.4   0.0    3.5  3  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00024   18.8   0.0    0.00053   17.7   0.0    1.5  1  TIGR02869 spore_SleB: spore cortex-lytic enzyme
     0.0011   16.1   0.0     0.0037   14.4   0.0    1.8  2  TIGR02858 spore_III_AA: stage III sporulation protein AA
     0.0016   15.4   0.8       0.16    8.8   0.0    3.5  3  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0023   15.0   0.3      0.053   10.6   0.0    2.7  3  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1115.5  11.6         0         0       1     844 [.       7     865 ..       7     870 .. 0.97

  Alignments for each domain:
  == domain 1    score: 1115.5 bits;  conditional E-value: 0
   TIGR03346   1 ltekaqealaeaqslalekdhqeiepehllkalleqeeglvaallekagv..nvealkealekeleklpkvsgaggevslskelerllekaeklaqklgdefvsvellllalleekeeakkllkeagvtkekleeaieevrggekvtdanaeekyealekyardlteraregkldPviGrdeeirrviqvlsrrtknnPvliGepGvGktaiveGlaqrivngdvPeslknkrllaldlgaliaGakyrGefeerlkavlkevekseGeiilfidelhtlvGaGkaeGaldagnllkPalarGelhciGattldeyrkyiekdaalerrfqkvlvdePsvedtisilrGlkeryevhhgvritdsalvaaatlshryitdrflPdkaidlideaaarlrmeidskPeeldeldrriiqlkierealkkekdeaskerleklekelaeleeesaeleekwkaekekiekvkkikeelekvklelekakregdlakaaelkygklpelekeleeaeekekeekke.........kllkeevteeeiaevvsrwtGiPvskllegerekllkleeelkervvGqdeaveavadavrrsraglsdPnrPigsflflGptGvGktelakalaeflfd.deealvridmseymekhsvarliGaPPGyvGyeeGGqlteavrrkpysvvlldevekahpdvfnvllqvlddGrltdgqGrtvdfkntviiltsnlgseaiqelaeeee...aeevkeavmealraefrPeflnrideivvfkalekeeikeiveiqlerlrkrlaerklelelsdaaldllaeagydPvyGarPlkraiqkelenplakkllagevkegdtiavd 844
                 lt+ + +a++++  la++++h++ +p+hl  +l++ ++++ a++ +ka    +v+ ++++l+k l k p+ s a  e   s++l++ll++a+k+a+ +gd+ ++ ++ll+a  +eke +k l  e+g+tk++ ++ai+e+rgg+kvt+++ae++yeal+ky++dl++ a+eg+ldPviGrdeeirrv+q+lsrrtknnPvl+GepG+Gkta+veGla+ri++gdvPe+lk+  l +ld+gal+aGakyrGefeerl+avl+ev+++eG++++f+de+h ++GaGk++Ga+da+nllkP+larGel++iGatt deyrk+iekd+a+errfqkv v eP+ve+t+s+lrGl  rye+hhgvri+d++lvaaa+ls++yit+rf Pdk+idl+deaaa+ r+ +ds+Pe++d+l+rri+ql+ie +alk+e+d++sk+r ++l++e+++l+e  a l++kw+ae+ + +++k++ke+le + ++  +a+r gd++kaa+lkyg +p+l+ +l++ e++e+e++ +         +++ e vt e+ia v+srwtGiPvskl +++r++ll l+++l++rv+Gq+ a++ v+da+ rs+agl+  ++P+gsflflGptGvGktel+kal + l+d de++lvridmsey+e+hsvarliGaPPGy+G++eGGqlteavr+kpy+vvlldevekahp v+ +llqvld+Grltd++Grtvdf+ntviiltsn+g+e+++ l+e++    +e+++++vme++r +f Peflnr+  iv+f++l  e+++++ + +++ +++rla + +++el+ + ++++ ea+y P +GarP+ r++++++ + l++ l++ge+++g+ ++++
  MMETSP1061-20121228|3064_1   7 LTDATSKAIETTLALARDNGHSTADPMHLAVVLFDGDDSIGARVCSKAPGapDVTIVRRNLQKLLLKRPSQSPAPLEAGPSHALAQLLNRAKKAAAANGDALIALDHLLMAEFDEKEVQKALETESGLTKKAARAAIDEIRGGRKVTSTSAEDQYEALQKYGIDLVKSAEEGRLDPVIGRDEEIRRVVQILSRRTKNNPVLVGEPGTGKTAVVEGLARRILEGDVPETLKGVSLRTLDFGALVAGAKYRGEFEERLRAVLDEVKSAEGKMVVFVDEIHLVLGAGKTDGAMDAANLLKPMLARGELRMIGATTNDEYRKHIEKDSAFERRFQKVTVLEPNVENTVSMLRGLVGRYEAHHGVRIADASLVAAAELSNKYITNRFNPDKSIDLMDEAAATKRTALDSRPEQIDQLERRILQLEIEATALKRENDKSSKKREKELRQEISNLTEAVAPLNAKWEAERGRADELKEVKEKLEVLEAKRLQAERIGDYEKAADLKYGAIPDLKSHLAKIEREEAERRANrnidnedddSIMDEVVTPEDIAGVISRWTGIPVSKLSQTDRDRLLMLDQRLQQRVIGQNPAIKEVTDAILRSKAGLAREDQPTGSFLFLGPTGVGKTELSKALFSELYDgDERHLVRIDMSEYQEQHSVARLIGAPPGYIGHDEGGQLTEAVRKKPYTVVLLDEVEKAHPKVLTILLQVLDEGRLTDSKGRTVDFTNTVIILTSNIGAEFLLGLTENSPehqIEAAHNNVMEKVRYSFAPEFLNRLSAIVMFNSLGIEQLEKVLQKSMKGIKRRLAPKGIKIELERSGVKAILEASYTPSFGARPVERYLESTVVTTLSRMLISGELSSGTIVHIE 865
                 6888999****************************************96522678899*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************999888776654433455566779**************************************************************************************************966789************************************************************************************************997666554334889999*******************************************************************************************************99986 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  759.2   8.8  2.9e-231  1.3e-228       2     842 ..       8     858 ..       7     866 .. 0.91

  Alignments for each domain:
  == domain 1    score: 759.2 bits;  conditional E-value: 2.9e-231
   TIGR03345   2 neelrkalekaaalavarghsevelehlllklleeedsdlaeilkel..kvdleelkaelaraleklkkgnsr..vpalskelvelleeawllaslelgeervrsgalllalleeaelrallssvskelekieveelkeklealveesaeaeeaekeasaaaeakaaakesaLdkytvdltaqAregkiDpvlgRdeeirqliDiLlRRrqnnPiltGeaGvGktAvveglAlriaagdvPealrevellsLDlgllqAGAsvkGeFekRlksvidevkasekpiilFiDeaHtliGaGgqaGqgDaanllkPaLARGelrtiaAttWaeykkyiekDaALtRRFqvvkveePdeekaiemlRglakvlekhhgveildeavkaavelsaRYisgRqLPDkavsllDtAcarvalsqkatPaeledlekeiealeaelellereeelgaeeeerlaeleeelaaleeelaalearwekekelveeikelreklee..........................eeeeeaeeeealeaelaeleaelaelqgeeplvsaevdeevvaevvadWtGiPvgrlvkdeiekvleleekleervvGqdealeaiaerirtarAgledpkkPlgvFllvGpsGvGktetalalAelly.GgeqnlitinmsefqeaHtvstLkGsPPGYvGyGeGGvLteAvRrkPysvvLLDevekAhpdvlelFyqvFDkGvleDgeGreidfkntvilltsnvgsdliaelaadeetapeaealaealrpeLlkvfkpAllgRle.vvpylplsdevlaeivelkleriakrlkenykaeleydealveeivarctevesGaRaidaileqtllpelseelLeklaek 842
                 ++++ ka+e++ ala  +ghs+ +  hl + l++ +ds  a++++++  + d++ ++++l++ l k ++++ +      s++l +ll++a   a++  g++ ++  +ll+a ++e+e++++l++ s   +k  +++++    ++  +            ++++++a+++ +aL+ky +dl ++A+eg++Dpv+gRdeeir+++ iL RR +nnP+l+Ge+G GktAvveglA+ri +gdvPe+l++v+l++LD+g+l AGA  +GeFe+Rl++v+devk++e  +++F+De+H ++GaG ++G  DaanllkP LARGelr i+Att  ey+k+iekD+A  RRFq v v eP++e++++mlRgl+ ++e+hhgv+i d +++aa+els++Yi++R  PDk+++l+D A+a  + + ++ P+++++le++i +le e+++l+re++  +++++r +el++e+++l+e++a l+a+we+e+  ++e+ke++ekle                           + +++  +  + e++ +++++++++ + + +++ + v  e +a v+++WtGiPv++l++ + +++l l+++l++rv+Gq+ a+++++++i  ++Agl ++++P+g Fl++Gp GvGkte + al  +ly G e++l+ i+mse+qe+H+v++L+G+PPGY+G+ eGG LteAvR+kPy+vvLLDevekAhp vl +  qv D G l+D++Gr++df ntvi+ltsn+g++ +  l++++ + ++ ea +++++++++  f p +l Rl+ +v +  l+ e+l+++ +  ++ i++rl+ + ++++e++ + v++i++ + +   GaR ++++le+t++ +ls+ l++  +++
  MMETSP1061-20121228|3064_1   8 TDATSKAIETTLALARDNGHSTADPMHLAVVLFDGDDSIGARVCSKApgAPDVTIVRRNLQKLLLKRPSQSPAplEAGPSHALAQLLNRAKKAAAA-NGDALIALDHLLMAEFDEKEVQKALETESGLTKKAARAAID----EIRGGR-----------KVTSTSAEDQYEALQKYGIDLVKSAEEGRLDPVIGRDEEIRRVVQILSRRTKNNPVLVGEPGTGKTAVVEGLARRILEGDVPETLKGVSLRTLDFGALVAGAKYRGEFEERLRAVLDEVKSAEGKMVVFVDEIHLVLGAGKTDGAMDAANLLKPMLARGELRMIGATTNDEYRKHIEKDSAFERRFQKVTVLEPNVENTVSMLRGLVGRYEAHHGVRIADASLVAAAELSNKYITNRFNPDKSIDLMDEAAATKRTALDSRPEQIDQLERRILQLEIEATALKREND--KSSKKREKELRQEISNLTEAVAPLNAKWEAERGRADELKEVKEKLEVleakrlqaerigdyekaadlkygaipDLKSHLAKI-EREEAERRANRNIDN-EDDDSIMDEVVTPEDIAGVISRWTGIPVSKLSQTDRDRLLMLDQRLQQRVIGQNPAIKEVTDAILRSKAGLAREDQPTGSFLFLGPTGVGKTELSKALFSELYdGDERHLVRIDMSEYQEQHSVARLIGAPPGYIGHDEGGQLTEAVRKKPYTVVLLDEVEKAHPKVLTILLQVLDEGRLTDSKGRTVDFTNTVIILTSNIGAEFLLGLTENSPE-HQIEAAHNNVMEKVRYSFAPEFLNRLSaIVMFNSLGIEQLEKVLQKSMKGIKRRLAPK-GIKIELERSGVKAILEASYTPSFGARPVERYLESTVVTTLSRMLISGELSS 858
                 6678899********************************99999987334688889999999998888877763245569999******9887665.67889*************99777666655544444333332....222222...........223345677899*********************************************************************************************************************************************************************************************************************************************************************************97..66778889************************************988999*********99888777665433111111111.233333444444444.66779**************************************************************************************************66699******************************************************************************************************88877.8899999******************963678999*********************998.******************************************998765555 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.8   0.5  6.4e-111  2.9e-108       5     468 ..      11     460 ..       7     478 .. 0.88
   2 !  365.4   0.1  2.5e-112  1.1e-109     416     733 ..     541     865 ..     517     866 .. 0.94

  Alignments for each domain:
  == domain 1    score: 360.8 bits;  conditional E-value: 6.4e-111
   TIGR02639   5 lekalsealeeakkrrhefvtlehlllalledeeal..eileecg..advellkkklekyleeelekleeeeeaepeqtvglqrvlerallhvksaekkevdigdllvalleeeesyasyllkkqgisrldilelisheiskdekkeeeeeeekeeeekeekkekealekytvdltekakkgkidPliGredelertiqvLcrrkknnPllvGepGvGktaiveGLakriaedkvPealknakiysLdlgsllaGtkyrGdfeerlkevveeiekeeda.ilfiDeihtivgagatsggsldasnlLkPalasGkirciGsttyeeykkifekdkaLsrrfqkidveePskeetvkilkglkekyeefhkvkysdealeaavelsakyindrfLPDkaiDviDeaGaalrlkekakkkakvsvkdieevvakiakipeksvssddkekLknlekeLkkkifGqdeaiea 468
                  +ka++++l++a+ + h    + hl  +l + ++ +   + ++     dv+ ++++l+k l ++ ++       e+  + +l ++l+ra +   + +   +   +ll+a ++e+e   +   +++g+++ ++   i +ei+   k  +++           +++ eal+ky  dl + a++g++dP+iGr++e+ r++q+L+rr+knnP+lvGepG Gkta+veGLa+ri e++vPe+lk+ ++ +Ld+g+l+aG+kyrG+feerl++v++e++  e + ++f+Deih ++gag t g ++da+nlLkP+la G++r+iG+tt +ey+k++ekd a+ rrfqk+ v eP+ e+tv++l+gl  +ye +h v+  d++l aa+els+kyi++rf PDk+iD++Dea a+ r   ++++++     ++e+ + ++ +i++++++ ++ +  k+ ekeL+++i    ea++ 
  MMETSP1061-20121228|3064_1  11 TSKAIETTLALARDNGHSTADPMHLAVVLFDGDDSIgaRVCSKAPgaPDVTIVRRNLQKLLLKRPSQSPA--PLEAGPSHALAQLLNRAKKAAAANGDALIALDHLLMAEFDEKEVQKAL-ETESGLTKKAARAAI-DEIRGGRKVTSTS----------AEDQYEALQKYGIDLVKSAEEGRLDPVIGRDEEIRRVVQILSRRTKNNPVLVGEPGTGKTAVVEGLARRILEGDVPETLKGVSLRTLDFGALVAGAKYRGEFEERLRAVLDEVKSAEGKmVVFVDEIHLVLGAGKTDG-AMDAANLLKPMLARGELRMIGATTNDEYRKHIEKDSAFERRFQKVTVLEPNVENTVSMLRGLVGRYEAHHGVRIADASLVAAAELSNKYITNRFNPDKSIDLMDEAAATKRTALDSRPEQI---DQLERRILQL-EIEATALKRENDKSSKKREKELRQEISNLTEAVAP 460
                 578899999*****************99998887764467766542369************999988888..55566677777******************************9987764.455666655554444.4444332222222..........2346789**********************************************************************************************************99987769*************9965.5***********************************************************************************************************9999999887766...7788877765.67788888888888899999999998777777765 PP

  == domain 2    score: 365.4 bits;  conditional E-value: 2.5e-112
   TIGR02639 416 kkakvsvkdieevvakiakipeksvssddkekLknlekeLkkkifGqdeaiealvkaikrsraGlkeenkPvgsflfvGptGvGktelakqLaeel....gvellrfDmseymekhtvsrliGsPpGyvGfeeGGlLteavrknPyavlLlDeiekahpDilnilLqvmDyatLtDnsGrkadfrnvilimtsnaGakea...skakiGfaeekseeksekaikklfsPefrnrldaiikfedlseevlekivkkeleelekkLaekkveleleddaikylaekgydeefGarelkrvieeeikkkladeiLfGklkkGgevkve 733
                  +++v+ +di+ v+++ + ip  ++s++d+++L  l+++L++++ Gq+ ai+++++ai rs+aGl +e++P+gsflf GptGvGktel+k+L +el      +l+r+Dmsey+e+h+v+rliG+PpGy+G++eGG+Lteavrk+Py+v+LlDe+ekahp +l ilLqv+D+++LtD++Gr +df n+++i+tsn+Ga+     ++++   + e  +++++++++  f+Pef nrl+ai+ f++l  e+lek+++k+++ ++++La k +++ele   +k ++e +y+++fGar+++r +e+++ ++l+++++ G+l +G+ v++e
  MMETSP1061-20121228|3064_1 541 MDEVVTPEDIAGVISRWTGIPVSKLSQTDRDRLLMLDQRLQQRVIGQNPAIKEVTDAILRSKAGLAREDQPTGSFLFLGPTGVGKTELSKALFSELydgdERHLVRIDMSEYQEQHSVARLIGAPPGYIGHDEGGQLTEAVRKKPYTVVLLDEVEKAHPKVLTILLQVLDEGRLTDSKGRTVDFTNTVIILTSNIGAEFLlglTENSPEHQIEAAHNNVMEKVRYSFAPEFLNRLSAIVMFNSLGIEQLEKVLQKSMKGIKRRLAPKGIKIELERSGVKAILEASYTPSFGARPVERYLESTVVTTLSRMLISGELSSGTIVHIE 865
                 4567999***************************************************************************************996654579*********************************************************************************************98541115555555666666889999****************************************************************************************************986 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.6     0.033        15     246     322 ..      92     165 ..      87     177 .. 0.72
   2 !   18.5   0.1   3.4e-07   0.00015      15      64 ..     181     226 ..     175     241 .. 0.84
   3 ?    0.8   0.0     0.083        38     114     148 ..     259     294 ..     255     328 .. 0.80
   4 !    8.7   0.0   0.00033      0.15      37      71 ..     609     643 ..     570     731 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.033
   TIGR02928 246 dlLreageiAeeegsekvteehvekAq.ekiekerllelirglpthsklvLlaiaalakkeedevrtgevyevYkeva 322
                 +lL +a + A  +g+  +  +h+ +A+ ++ e+++ le+ +gl+++     +a++  + ++ ++v+++  +++Y+ + 
  MMETSP1061-20121228|3064_1  92 QLLNRAKKAAAANGDALIALDHLLMAEfDEKEVQKALETESGLTKKAA---RAAID-EIRGGRKVTSTSAEDQYEALQ 165
                 699**********************97345567777777666665443...33332.223677777777788887765 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 3.4e-07
   TIGR02928  15 drivhRdeqieelakalkpilrgsrpsnvliyGktGtGKtavtkkvlkel 64 
                 d + +Rde+i++++++l+     ++ +n +++G++GtGKtav++ + +++
  MMETSP1061-20121228|3064_1 181 DPVIGRDEEIRRVVQILSR----RTKNNPVLVGEPGTGKTAVVEGLARRI 226
                 66889*******9987765....6667889*************9988876 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.083
   TIGR02928 114 kevfeelvkeleeredsliivLDEiDklv.kkeade 148
                 +e  + + +e+++ e+ +++ +DEi  ++  ++ d 
  MMETSP1061-20121228|3064_1 259 EERLRAVLDEVKSAEGKMVVFVDEIHLVLgAGKTDG 294
                 56678999*****************98876666665 PP

  == domain 4    score: 8.7 bits;  conditional E-value: 0.00033
   TIGR02928  37 gsrpsnvliyGktGtGKtavtkkvlkeleeaaeek 71 
                 ++   + l  G+tG+GKt  +k+++ el +  e++
  MMETSP1061-20121228|3064_1 609 DQPTGSFLFLGPTGVGKTELSKALFSELYDGDERH 643
                 4445567789****************998766653 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0021      0.93     116     192 ..     201     284 ..     185     293 .. 0.70
   2 !    6.3   0.0     0.002       0.9      73     140 ..     577     635 ..     563     638 .. 0.80
   3 !   12.4   0.0   2.7e-05     0.012     294     384 ..     759     845 ..     730     865 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0021
   TIGR00382 116 eksnilliGptGsGktllaqtlakel...dvpfaiadat..tlt.eaGyvGedvenillkllqaadydvekae.kGiiyideid 192
                  k n +l+G  G+Gkt + + la+++   dvp ++   +  tl   a   G      + + l+a   +v+ ae k ++++dei 
  MMETSP1061-20121228|3064_1 201 TKNNPVLVGEPGTGKTAVVEGLARRIlegDVPETLKGVSlrTLDfGALVAGAKYRGEFEERLRAVLDEVKSAEgKMVVFVDEIH 284
                 58899******************9876778998876543113321233335555555555556665666666537788888886 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.002
   TIGR00382  73 kevldeyviGqeqakkvlsvavynhykrlrleknkksddgveleksnilliGptGsGktllaqtlake 140
                  + l++ viGq+ a k ++ a+      l        d+         l++GptG Gkt l+++l  e
  MMETSP1061-20121228|3064_1 577 DQRLQQRVIGQNPAIKEVTDAILRSKAGLAR-----EDQ----PTGSFLFLGPTGVGKTELSKALFSE 635
                 5778899999999999999999877666662.....233....3467899************999765 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 2.7e-05
   TIGR00382 294 pedlvkfGlipefiGrlpvlatlekldeealvailtkpknalvkqyqkllkldevelefeeealkaiakkalerktGarglrsiveellld 384
                   + v++ + pef+ rl  + ++++l  e+l ++l+k         ++ l  + +++e+e   +kai + + +   Gar +   +e+ ++ 
  MMETSP1061-20121228|3064_1 759 VMEKVRYSFAPEFLNRLSAIVMFNSLGIEQLEKVLQKSMKG----IKRRLAPKGIKIELERSGVKAILEASYTPSFGARPVERYLESTVVT 845
                 34569*******************************98655....566678899999**********************999888887765 PP

>> TIGR02869  spore_SleB: spore cortex-lytic enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.2e-06   0.00053     101     163 ..     208     270 ..     127     277 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.2e-06
   TIGR02869 101 rgePyeGqvavaavilnrvkdprfPntvaGvifepraftavadGqiyltpeeeakkavldain 163
                  geP +G+ av   +  r+ +   P+t++Gv ++   f a++ G  y    ee  +avld ++
  MMETSP1061-20121228|3064_1 208 VGEPGTGKTAVVEGLARRILEGDVPETLKGVSLRTLDFGALVAGAKYRGEFEERLRAVLDEVK 270
                 59**********************************************************987 PP

>> TIGR02858  spore_III_AA: stage III sporulation protein AA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   8.1e-06    0.0037     105     191 ..     195     278 ..     183     342 .. 0.86
   2 ?   -2.7   0.0       1.3     6e+02     113     143 ..     612     642 ..     591     659 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.1e-06
   TIGR02858 105 eylvknnrvlntliisPPqsGkttllrdlaralstGisklglkglkvgivderseiaac.vkGvPqldvGlrtdvldaCpkaeGlmll 191
                 + l    + +n ++++ P +Gkt+++  lar + +G    +lkg+    +d  + +a++ ++G     +  r  vld+   aeG m++
  MMETSP1061-20121228|3064_1 195 QIL-SRRTKNNPVLVGEPGTGKTAVVEGLARRILEGDVPETLKGVSLRTLDFGALVAGAkYRGEFEERL--R-AVLDEVKSAEGKMVV 278
                 333.445568999*****************************************999864778666554..3.599999999998875 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.3
   TIGR02858 113 vlntliisPPqsGkttllrdlaralstGisk 143
                 + + l ++P   Gkt l + l  +l +G ++
  MMETSP1061-20121228|3064_1 612 TGSFLFLGPTGVGKTELSKALFSELYDGDER 642
                 4567899*********999998888888655 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.2     0.036        16      35      54 ..     207     226 ..     180     291 .. 0.53
   2 !    8.8   0.0   0.00035      0.16       7      54 ..     585     636 ..     579     642 .. 0.66
   3 ?   -4.1   0.0       2.9   1.3e+03      83     107 ..     687     711 ..     683     715 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.036
   TIGR00635  35 lyGPPGlGkttlakiiakel 54 
                 l+G PG Gkt++ + +a+ +
  MMETSP1061-20121228|3064_1 207 LVGEPGTGKTAVVEGLARRI 226
                 56666666666655554432 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00035
   TIGR00635   7 iGqek.vkeklqlfi..kaakkrkeal.dhvllyGPPGlGkttlakiiakel 54 
                 iGq+  +ke  + ++  ka  +r+++     l+ GP G+Gkt l+k + +el
  MMETSP1061-20121228|3064_1 585 IGQNPaIKEVTDAILrsKAGLAREDQPtGSFLFLGPTGVGKTELSKALFSEL 636
                 5665413333333332245556666651578899***********9888876 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 2.9
   TIGR00635  83 dvlfiDeihrlskaveellypamed 107
                  v+ +De+ + +++v  +l +++++
  MMETSP1061-20121228|3064_1 687 TVVLLDEVEKAHPKVLTILLQVLDE 711
                 68899**********9999999987 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.091        42      29      58 ..     195     224 ..     178     227 .. 0.72
   2 ?   -3.4   0.1       2.1   9.7e+02     289     323 ..     421     454 ..     380     485 .. 0.49
   3 !   10.6   0.0   0.00012     0.053      16      56 ..     584     632 ..     578     642 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.091
   TIGR02397  29 aikknkiahayLfsGprGvGKTsiArilAk 58 
                 +i +++ ++  ++ G  G+GKT++   lA+
  MMETSP1061-20121228|3064_1 195 QILSRRTKNNPVLVGEPGTGKTAVVEGLAR 224
                 4667788888899*********98766665 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.1
   TIGR02397 289 dlllvkktkselleveeeeeeslkekaeklslekl 323
                 ++l ++  + + l+ e++++++ +ek+ + + ++l
  MMETSP1061-20121228|3064_1 421 RILQLEIEA-TALKRENDKSSKKREKELRQEISNL 454
                 333332222.2222222222211222222222223 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.00012
   TIGR02397  16 liGqehvvktLknaikknkiaha........yLfsGprGvGKTsiAril 56 
                 +iGq+  +k ++ ai ++k   a        +Lf Gp GvGKT +++ l
  MMETSP1061-20121228|3064_1 584 VIGQNPAIKEVTDAILRSKAGLAredqptgsFLFLGPTGVGKTELSKAL 632
                 7888888888888888777654333333333************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       305  (0.074354); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.66u 0.14s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 2639.78
//
Query:       MMETSP1061-20121228|3072_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 2979.18
//
Query:       MMETSP1061-20121228|3077_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0069   13.8   5.8     0.0079   13.6   4.0    1.0  1  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   4.0   1.9e-06    0.0079      76     155 ..      10      89 ..       2      93 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.9e-06
   TIGR01777  76 eerkkeileSRikttealvelikkakqkpkvlisasavgyYgeseekelteee.eeagddFlaklceeWEeaaqaaeklgv 155
                 +++ ++i +S ++tt+++ ++++     + +++ ++av+ + +++++   e+e e ++++   +l ++W +++q+ ++++ 
  MMETSP1061-20121228|3077_1  10 NSNSNSIGDSSLTTTTTVSQIVSTLA-AMGLFVTTAAVSQWIQNQHRRQRERErERDEEEQELRLLRAWRQQQQQQQQQQQ 89 
                 45668899****************99.788************999999999997888888999********9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       571  (0.1392); expected 82.0 (0.02)
Passed bias filter:                      261  (0.0636275); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 563.95
//
Query:       MMETSP1061-20121228|3079_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 629.95
//
Query:       MMETSP1061-20121228|3080_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   10.7  11.3      0.084    9.4   7.8    1.5  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
       0.94    7.6  14.8        1.3    7.2   5.4    2.4  2  TIGR00621 ssb: single-stranded DNA-binding protein


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   7.8   4.1e-05     0.084      81     183 ..      55     183 ..      52     188 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 4.1e-05
   TIGR01645  81 qtlahqkqqlenqqrqvqrqq..alai.....msrvvGsisfelkedt.lrra.....fdPfGPiksinmsW.....dpvtqkhkgfafve.evPeaallal..eqmngallGGrnlkvg......rPsn 183
                 q   hq+qq+++qq+q q+qq  +         +  vG +s+++++ t l++a     f+ +G   ++   W     d   ++h+gf ++e e  +  +l +  ++   all Gr ++v+      rP+n
  MMETSP1061-20121228|3080_1  55 QQQQHQQQQQQQQQHQ-QQQQsrTYDFpdhppFTAFVGNLSYDIQNATqLQQAmtdvvFERLGERVTVLGGWisydrDNRNKQHRGFGYIElETLDQLKLVMklNDDGQALLAGRKIQVDtaihqnRPNN 183
                 5567998888888877.4444014443444446889*******987653555522222778887666554443333377889*********99999988875114455689********97766666655 PP

>> TIGR00621  ssb: single-stranded DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.4   0.00061       1.3     131     166 .]      51      86 ..       4      86 .. 0.56
   2 ?    4.9   0.4     0.003       6.2     100     135 ..     170     199 ..     103     224 .] 0.53

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00061
   TIGR00621 131 qapqesqqeaqatgkekassapqkqlidgsdddiPF 166
                 +++q++qq++q+++++++++++q++ + ++ d  PF
  MMETSP1061-20121228|3080_1  51 HHSQQQQQHQQQQQQQQQHQQQQQSRTYDFPDHPPF 86 
                 222223333333333334444444455557788887 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.003
   TIGR00621 100 iiadnlqlldlsakaqggekelneesgesqqqapqe 135
                 i++d    ++ +      ++++n+++++++++ p++
  MMETSP1061-20121228|3080_1 170 IQVDT--AIHQN----RPNNNYNNNNNNNNRRGPNH 199
                 33333..11111....11111122222211111211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       357  (0.0870307); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|3085_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 653.95
//
Query:       MMETSP1061-20121228|3086_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       347  (0.0845929); expected 82.0 (0.02)
Passed bias filter:                      219  (0.0533886); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1170.30
//
Query:       MMETSP1061-20121228|3082_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-18   61.0   1.3    1.4e-17   60.5   0.9    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    3.8e-10   36.7   0.8    6.7e-10   35.8   0.5    1.4  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    5.3e-07   26.6   0.8    1.6e-06   25.0   0.6    1.8  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    3.6e-06   23.3   0.9     0.0082   12.2   0.0    2.2  2  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
    3.2e-05   20.6   0.5    0.00028   17.5   0.4    2.1  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    0.00018   17.7   1.1    0.00031   16.9   0.1    1.8  2  TIGR00631 uvrb: excinuclease ABC subunit B
    0.00039   17.5   3.8      0.052   10.5   0.1    2.5  2  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.9   2.4e-20   1.4e-17      25     344 ..     179     500 ..     166     513 .. 0.81

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 2.4e-20
   TIGR04121  25 aeegesglliapTGaGKTlavflpsliela....akekpkkglkvlyitPLkaLakdieraleapie.elgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgn.leeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkar...ttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsn 344
                 ++e++++l +a TG+GKTla ++p++ +++    +++k+++ +  l i+P + La++i    e+ ++ + +   +v +  G t++++ ++  + +  i++ Tp  l   l ++  ++++++l++++ DE  +Ll       +e  L  L+  +++ +++  sAT+ + ++e+a + ++++     + v++  + ++e +++  + ++ +  +  l ++al ++le+ +k++     +vF  t   + +l + + +++ ++   +   H+  +++qRe+  +++++ k  ++ +      G+D+ dv  v+qv      +  + R+GR++
  MMETSP1061-20121228|3082_1 179 LKENKDCLAKAKTGTGKTLAFMIPTIEKIKasmsNTTKQRSDICCLVISPTRELAQQIGTETEKLLSfHKNYLNKVVVCVGGTNKNKDTKSLSGTTPIVVATPGRLLDHLQTSGLAERMARLDTLIFDEADQLLDMGFRPDIERILRLLQPSRQTRQTLLFSATIPDsVSEIAGIAMRRDY----NFVDTVGE-DTEQTHMHVQ-QQLMVTSQALQIEALASILERETKSNkdyKIIVFFTTARLTGFLAELFNSVKSKTGYDVLEIHSRKSQKQRERASEEFRKRKNAIMFSSDVTARGMDYPDVSFVLQVSL-TDRSQYIHRLGRTA 500
                 468899*********************99988877788889*******************99998872445566899*********************************************************9987788899999999999999*********8724555655555554....66666333.3333333333.567777888889999999887555441225788888877777777777777777677777779999**************99888888888899*************65.57789999999986 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.5   1.1e-12   6.7e-10       5     329 ..     158     513 ..     154     551 .. 0.69

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.1e-12
   TIGR01389   5 LkevFGyeeFRggqeeiieevld.grdvlavlPtGGGkslCYqvPaL.....llkglt........vvisPLisLmkDq.vdqLraaGveaaalnstlsa..keaqeilkalaagelklLYvaPerleqdkflellerl..kiallavDeahCvsqWGhDFRpeYkrlgelaerfpkap.vialtatadaevredivekLelkdaaefvssf....dRenl....afsvvkkenkkkqlleylkkere....ksGiiYassRkkveelaeaLes....kgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillys 329
                 + evF ye     q+e +  +l+ ++d+la   tG Gk l + +P++      ++++t        +visP   L +    ++ +    + ++ln  +      +++  ++  +g   ++  +P rl+ +   + l++   +++ l +Dea  +   G  FRp+ +r+ +l +   ++   + + at  ++v e i+  + ++   +fv+++    +   +    +++v+ +  + + l + l++e++       i++ ++ + +  lae  +s     g+++l  h+  s+k+R++a e+F + +++++ +      G+d +dv fv+ + l     +y    GR  R G+  ++ ll +
  MMETSP1061-20121228|3082_1 158 MAEVFCYEFMTAVQAETLPLILKeNKDCLAKAKTGTGKTLAFMIPTIekikaSMSNTTkqrsdiccLVISPTRELAQQIgTETEKLLSFHKNYLNKVVVCvgGTNKNKDTKSLSGTTPIVVATPGRLLDHLQTSGLAERmaRLDTLIFDEADQLLDMG--FRPDIERILRLLQPSRQTRqTLLFSATIPDSVSE-IA-GIAMRRDYNFVDTVgedtEQTHMhvqqQLMVTSQALQIEALASILERETKsnkdYKIIVFFTTARLTGFLAELFNSvkskTGYDVLEIHSRKSQKQRERASEEFRKRKNAIMFSSDVTARGMDYPDVSFVLQVSLTDR-SQYIHRLGRTARAGKDGKGGLLLA 513
                 6799**************999972579******************87443331233322333333399***999976532466778899999**998765113344555667789999**********9999998877511567799*******9998..9*********999887776699999999998875.32.233333333333321100333221111233334444444555555554432111456888888887777776665422226899*************************************************99765.677777777666666655554433 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.6   2.8e-09   1.6e-06       3     338 ..     158     523 ..     156     560 .. 0.67

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 2.8e-09
   TIGR00614   3 lkkvfglesfrpvqlevinavlegr.dalvvmatGgGksLCyqlpav......v.......sdgltlvisPLisLmeDqv.lqLkasdisatlLnsaqskeeakevladl....kdgklkll.YvtPekvsksksllqkle......erkkltliavDeahCisqWGhDfRsdykal.gsLkqklPsvpviaLtatasssvreDilklLklkkpqvtitsfdRpnlkyeveekks..kiledllkfiv.......kefkgksGiiYClsrkkveqvaaeL....qkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesG...RaGRDglksecvlfyapaDvall 338
                 + +vf +e    vq e++  +l+++ d+l    tG Gk L + +p++      +       sd   lvisP + L +    +  k +  +  +Ln              +    k+   k l   tP  v++  +ll++l+         +l  ++ Dea  + + G  fR+d +++   L+ +  +   +  +at  +sv e +   ++    +v + + d +  +++v+++      + ++  +          + ++k  i++ ++ + +  +a+       k+g   +  h+  ++++r++  ++f + +  ++ +      G++ pdv fv+  sl+    +Y    G   RaG+Dg     ++ y+++ + + 
  MMETSP1061-20121228|3082_1 158 MAEVFCYEFMTAVQAETLPLILKENkDCLAKAKTGTGKTLAFMIPTIekikasMsnttkqrSDICCLVISPTRELAQQIGtETEKLLSFHKNYLNKVVVC---------VggtnKNKDTKSLsGTTPIVVATPGRLLDHLQtsglaeRMARLDTLIFDEADQLLDMG--FRPDIERIlRLLQPSRQTRQTLLFSATIPDSVSEIAGIAMRRDYNFVDTVGEDTEQTHMHVQQQLMvtSQALQIEALASileretkSNKDYKI-IVFFTTARLTGFLAELFnsvkSKTGYDVLEIHSRKSQKQRERASEEFRKRKNAIMFSSDVTARGMDYPDVSFVLQVSLTDR-SQYIHRLGrtaRAGKDGKGGLLLADYEQHHMVRK 523
                 568999**9*************9988*******************9833222211111111222346666666664422111222233334444433322.........11223444444331455666666666666666555543667888999*******9999..9***98751556666777788999********99888888888899999999***99999999975332233333332244566533333343.6666666666555543322124678889999*****************88888888887788999************9854.5677777722257777776666666777766553 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.4e-05    0.0082     254     287 ..     172     205 ..     154     254 .. 0.83
   2 !    9.6   0.2   8.8e-05     0.052     701     789 ..     392     484 ..     334     486 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.4e-05
   TIGR01407 254 aelvedelteeekslIeAatGtGKtlgYLLpaly 287
                 ae++   l+e+++ l +A tGtGKtl++++p   
  MMETSP1061-20121228|3082_1 172 AETLPLILKENKDCLAKAKTGTGKTLAFMIPTIE 205
                 56677789**********************9754 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 8.8e-05
   TIGR01407 701 vaskivelaa.lesskilVLFTskemlkaVadklkelseeeglevl...aQginGsrakilkrFekgekaiLlGassFwEGvDlpgnelkilv 789
                  as +++ ++  ++ ki+V FT+ ++  + a++ +  + + g+ vl   + + + +r++   +F k ++ai++  +    G+D+p    +++v
  MMETSP1061-20121228|3082_1 392 LASILERETKsNKDYKIIVFFTTARLTGFLAELFNSVKSKTGYDVLeihSRKSQKQRERASEEFRKRKNAIMFSSDVTARGMDYPDVSFVLQV 484
                 4444444444045679**********9999999999999999998832234444789999************************998887776 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.4   4.8e-07   0.00028     266     558 ..     192     507 ..     177     529 .. 0.60

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4.8e-07
   TIGR00643 266 GsGKTvVavlallaviesG.....yq.....valmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekve.......fkeLalviiDEQhr.FGveQRkkLrekgkek....iaphvLvmsATPIPRtlA.lt.vygdldvsiidelPlGrkp....ittklikekek...dkvyevveeeikkgrqvyvvyplieeseklelkaaealleelkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmv.iedaeRfGlsq.LHQLRGRvgRgekksy 558
                 G+GKT+  ++ +++ i++      +q     ++++ PT  LA+Q   + ++ll+  +  ++ ++  + + +k++ +++++ G+  +vv T   l ++ +        ++L   i DE  +      R  +++  +      ++ ++L++sAT IP ++  ++ +    d  ++d++    ++    ++ +l+ ++++   + + +++e+e  k ++ y ++        +      +l++++k++   + v  +h+r +++++e++ eeFr+++  i+ +  v   G+d P+++ ++ +   +R   sq +H L GR +R  k+++
  MMETSP1061-20121228|3082_1 192 GTGKTLAFMIPTIEKIKASmsnttKQrsdicCLVISPTRELAQQIGTETEKLLSFHKNYLNKVVVCVGGTNKNKDTKSLS-GTTPIVVATPGRLLDHLQtsglaerMARLDTLIFDEADQlLDMGFRPDIERILRLLqpsrQTRQTLLFSAT-IPDSVSeIAgIAMRRDYNFVDTVGEDTEQthmhVQQQLMVTSQAlqiEALASILERET-KSNKDYKIIVFFTTARLTG--FLAELFNSVKSKT-GYDVLEIHSRKSQKQRERASEEFRKRKNAIMFSSDVTARGMDYPDVSFVLqVSLTDR---SQyIHRL-GRTARAGKDGK 507
                 66666665555555554331111122233336778888888888887777777766555666666666666667777776.88888888888777776511111114556678888876523444454444433322333377888888888.8888753221222335555555544333300003333333333355444444555554.4455566666666555554..3456777777765.5888889***************************************96653667777...3325666.77777666655 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       0.3   1.7e+02      33      77 ..     186     243 ..     174     249 .. 0.51
   2 !   16.9   0.1   5.3e-07   0.00031     416     541 ..     376     501 ..     307     522 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.3
   TIGR00631  33 vLlGvtGsGktf.....tianvia........kvqkPtlvlahnktLaaqLyeelkel 77 
                   +  tG+Gkt+     ti ++ a        +++   lv+++ + La q+ +e  +l
  MMETSP1061-20121228|3082_1 186 LAKAKTGTGKTLafmipTIEKIKAsmsnttkqRSDICCLVISPTRELAQQIGTETEKL 243
                 5556677777752222222222220000000023335677777777777777776655 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 5.3e-07
   TIGR00631 416 lDPevevrptegqvddlleeire..rvaknervlvttltkkmaedltdylkelgikvky....lhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraar 541
                 +  +++v  ++ q++ l + +++  +++k+ +++v   t +++  l++ ++ ++ k+ y    +hs     +r +  +++rk +  ++   ++   G+D P+vs+v  +       l ++   i  +Gr ar
  MMETSP1061-20121228|3082_1 376 VQQQLMVTSQALQIEALASILERetKSNKDYKIIVFFTTARLTGFLAELFNSVKSKTGYdvleIHSRKSQKQRERASEEFRKRKNAIMFSSDVTARGMDYPDVSFVLQV------SLTDRSQYIHRLGRTAR 501
                 56678899999******9877651155677899******************999999987766899989999*********************************9543......24444455666666666 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.1   8.9e-05     0.052      11      63 ..     180     244 ..     170     274 .. 0.70
   2 !    7.5   0.4    0.0007      0.41     265     355 ..     398     498 ..     287     500 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 8.9e-05
   TIGR03158  11 ekdadvllntAptGaGKtlaalvevlseeldt.............ialyPtNaLiedqekaikelv 63 
                 ++++d  l +A tG+GKtla +++++++   +             + + Pt +L+++   + ++l+
  MMETSP1061-20121228|3082_1 180 KENKD-CLAKAKTGTGKTLAFMIPTIEKIKASmsnttkqrsdiccLVISPTRELAQQIGTETEKLL 244
                 44444.4689***************98765445666788888877667799999888777777776 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0007
   TIGR03158 265 erfdqlsgergaiildslaevkrlsellre..qelglqvgritGlakkkekeral......sfdillgtsavdvGvdFktd.fli.FsasdaaeFlqRlGR 355
                  + +   + + ++ + ++     l el+    +++g++v +i   + +k++era       +  i+ +      G+d+    f++  s +d+++++ RlGR
  MMETSP1061-20121228|3082_1 398 RETKSNKDYKIIVFFTTARLTGFLAELFNSvkSKTGYDVLEIHSRKSQKQRERASeefrkrKNAIMFSSDVTARGMDYPDVsFVLqVSLTDRSQYIHRLGR 498
                 3444555666666777777777788888877799***********99999999752222214567788888889****654465526789**********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.50
# Mc/sec: 1652.50
//
Query:       MMETSP1061-20121228|3083_1  [L=834]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (834 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 3057.75
//
Query:       MMETSP1061-20121228|3067_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-152  505.7   0.5   1.7e-152  505.4   0.3    1.1  1  TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
    2.2e-92  307.3   0.0    2.7e-92  307.0   0.0    1.1  1  TIGR00167 cbbA: ketose-bisphosphate aldolases
    9.4e-38  128.3   0.1    2.3e-37  127.0   0.1    1.5  1  TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
    1.1e-21   75.0   0.5    1.1e-20   71.7   0.3    2.7  1  TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
    1.6e-13   48.3   0.1    8.2e-06   22.9   0.0    3.4  3  TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
  ------ inclusion threshold ------
      0.014   13.1   0.0      0.029   12.1   0.0    1.5  1  TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family


Domain annotation for each model (and alignments):
>> TIGR01520  FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.4   0.3  2.4e-155  1.7e-152       4     356 ..      79     431 ..      76     432 .. 0.98

  Alignments for each domain:
  == domain 1    score: 505.4 bits;  conditional E-value: 2.4e-155
   TIGR01520   4 klktgvilgedvaklfevakeekfaiPainvvssetvnaaleaardakspiilqfsnggaafiaGkGvkdeaekaasiaGaiaaaeyvrsiaekygvpvvlhtdhCakkllpyvdglleadekyfkkegkPlfsshmldlseepieenieiakkylkrmakiklileieiGitGGeedGvdneeadkeelytkPedvekvyeelsk.ispkfsiaaafGnvhGvykpGnvklrPdiladgqeyvaeklglkeakplsfvfhGGsGstkeeikealsyGvvkvnvdtdtqyaalegildyvlknedylqsqvGnpkgeekpnkkvydPrvwlreaeksmkarvekaleelnaink 356
                  +k+gv+ g+ + +l++ ak+e faiP +nvv+++++n+ +eaa++ + pi++ fs+gg  fiaGk   d  ++a siaG +aaa++v+ +a+ ygvpvvlhtdhC k  lp++dgl++a+e++++++gkPlfsshmldlsee++eeni i+k+y+++ ak++++le e+G+tGGeedGvdn ++d++ lyt+Pe+v+++ye+ls+ +++ f+ aa+fGnvhGvy+pGnv+lrP+il+++q+y aekl+  e+k+++fvfhGGsGs++e+i+ a++ Gv+k+n+dtdtq+a++ gi++y  k +dylq+q+Gnp+g ++pnkk+ydPr+ lr+ae++m ar++ka e+l+++++
  MMETSP1061-20121228|3067_1  79 SVKPGVVSGKALVDLLDHAKKEGFAIPGVNVVGTSSINSCMEAAKKYGGPIMVTFSKGGGFFIAGKAADDTDDQA-SIAGCVAAAKHVHEVAALYGVPVVLHTDHCQKAWLPWMDGLVKANEEFYAANGKPLFSSHMLDLSEESLEENIGICKEYMEKFAKLDILLEFELGVTGGEEDGVDNTDVDSARLYTQPEEVWYAYEQLSQvENAAFTCAASFGNVHGVYAPGNVELRPEILHNTQKYFAEKLDNGEEKAMKFVFHGGSGSSVEDIQYAIEAGVIKMNIDTDTQWAFWDGIREYEAKYHDYLQGQIGNPDGDDVPNKKYYDPRMALRAAEEAMAARLVKAAEDLKCVDV 431
                 689****************************************************************99987777.*********************************************************************************************************************************966789********************************************************************************************************************************************986 PP

>> TIGR00167  cbbA: ketose-bisphosphate aldolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  307.0   0.0     4e-95   2.7e-92       5     289 ..      89     431 ..      85     432 .. 0.97

  Alignments for each domain:
  == domain 1    score: 307.0 bits;  conditional E-value: 4e-95
   TIGR00167   5 dvkellekakeegyaipaiNvvnlesikavleaaeeaksPviiqasegaakyiaG............leaiaalvkalveaekytvPvvlHlDHga.............seesiaeavkagfsSvMiDaSeepfeeNieltkkvvelahkvgvsvEaElGilggeedgvdnskadesalytdpe....eakelvkksq.vdalAaaiGnvHGvYkkepkkLkferleeiqklvs..........lplVlHGgsgipeeeikkaiklGvvKvNidTdlqlAfaeavreylkenkde..................ydprkylkeaekamkevvkekikelgsank 289
                  +  ll++ak+eg+aip +Nvv+++si++ +eaa++   P+++ +s+g+  +iaG             + +aa+ +++  a+ y+vPvvlH+DH++             +ee +a+++k++fsS+M+D+See++eeNi ++k+++e ++k+++ +E ElG++ggeedgvdn ++d+ +lyt+pe    ++++l+++ +  ++ Aa++GnvHGvY++++++L++e+l+++qk+            +++V+HGgsg++ e+i+ ai+ Gv+K+NidTd+q+Af++++rey ++ +d+                  ydpr  l++ae+am +++ ++ ++l++ + 
  MMETSP1061-20121228|3067_1  89 ALVDLLDHAKKEGFAIPGVNVVGTSSINSCMEAAKKYGGPIMVTFSKGGGFFIAGkaaddtddqasiAGCVAAAKHVHEVAALYGVPVVLHTDHCQkawlpwmdglvkaNEEFYAANGKPLFSSHMLDLSEESLEENIGICKEYMEKFAKLDILLEFELGVTGGEEDGVDNTDVDSARLYTQPEevwyAYEQLSQVENaAFTCAASFGNVHGVYAPGNVELRPEILHNTQKYFAekldngeekaMKFVFHGGSGSSVEDIQYAIEAGVIKMNIDTDTQWAFWDGIREYEAKYHDYlqgqignpdgddvpnkkyYDPRMALRAAEEAMAARLVKAAEDLKCVDV 431
                 56689*************************************************************999***************************************99999999********************************************************************999999***99865279********************************99*******************************************************************************************************99875 PP

>> TIGR01859  fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.0   0.1   3.4e-40   2.3e-37       6     268 ..      92     418 ..      85     428 .. 0.78

  Alignments for each domain:
  == domain 1    score: 127.0 bits;  conditional E-value: 3.4e-40
   TIGR01859   6 ellekakkekYavgafninnlellqaileaaeeeksPvivqvsegavkYlg...........gikvvvalvkalieklsi..vPvalhLDhGss.....yescikaik.....aG...fssvmiDashlpleenlketkkvveiahakgvsveaelGklgGieddvvekeae....ladidea....kklvketg.vDaLaiaiGtshGkyk.gepkldferlkeikkll........n..lPlvlhGasGipeeqlkkaiklgiakvnidtdlrlaftaairkvle..................ekkdeydpRkilaparealkev 268
                 +ll++akke++a++ +n+ +   ++  +eaa++   P++v+ s+g   +++            i  +va+ k+++e ++   vPv+lh Dh ++     ++  +ka +     +G   fss m+D s+ +leen+   k+ +e   +  +  e elG+ gG+ed+v++ ++     +++++e+    ++l +  +   + a++ G++hG y  g+ +l+ e l++ +k+         +  + +v hG+sG + e+++ ai+ g+ k+nidtd++ af + ir++ +                   +k+ ydpR  l  a+ea+ + 
  MMETSP1061-20121228|3067_1  92 DLLDHAKKEGFAIPGVNVVGTSSINSCMEAAKKYGGPIMVTFSKGGGFFIAgkaaddtddqaSIAGCVAAAKHVHEVAALygVPVVLHTDHCQKawlpwMDGLVKANEefyaaNGkplFSSHMLDLSEESLEENIGICKEYMEKFAKLDILLEFELGVTGGEEDGVDNTDVDsarlYTQPEEVwyayEQLSQVENaAFTCAASFGNVHGVYApGNVELRPEILHNTQKYFaekldngeEkaMKFVFHGGSGSSVEDIQYAIEAGVIKMNIDTDTQWAFWDGIREYEAkyhdylqgqignpdgddvPNKKYYDPRMALRAAEEAMAAR 418
                 799******************************************9999888999999988845555555666666655556*********9873333335566664411111335569**********************************************98876532233899***833333443322203356899******87515544544444444332211112111223889****************************************988899*************9978889************99865 PP

>> TIGR01858  tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.3   1.6e-23   1.1e-20       6     247 ..      92     379 ..      84     428 .. 0.70

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 1.6e-23
   TIGR01858   6 ellkeaqkgGyavpafnihnletlqvvvetaaelkspvilaGtpg.tfkyag...........teelval...vsaaakkyelplalhldhhes.....lddi...kqkvaa..G...vksvmidashlsfeenvklvkevvdfchrfdasveaelGrlgGveddlsvdeeda..lytdpdeak.efveatGvdsl....avaiGtahGlykea.....pkldfdrlakir......ekvdvplvlhGasdvpdelvrrtielGiskvnvatelkiafsdalkayfie 247
                 +ll +a+k+G+a+p  n+    +++  +e+a +   p++++ + g  f  ag               va    v+ +a  y +p+ lh dh ++     +d +   +++  a  G   + s m+d s  s+een+ + ke ++   + d  +e elG  gG ed +   + d+  lyt+p+e    + +++ v+      a + G  hG+y+       p++  +  +         e+  + +v+hG+s+ + e+++ +ie G+ k+n+ t+ + af d +++y ++
  MMETSP1061-20121228|3067_1  92 DLLDHAKKEGFAIPGVNVVGTSSINSCMEAAKKYGGPIMVTFSKGgGFFIAGkaaddtddqasIAGCVAAakhVHEVAALYGVPVVLHTDHCQKawlpwMDGLvkaNEEFYAanGkplFSSHMLDLSEESLEENIGICKEYMEKFAKLDILLEFELGVTGGEEDGVDNTDVDSarLYTQPEEVWyAYEQLSQVENAaftcAASFGNVHGVYAPGnvelrPEILHNTQKYFAekldngEEKAMKFVFHGGSGSSVEDIQYAIEAGVIKMNIDTDTQWAFWDGIREYEAK 379
                 6899*********************************997644431232222111110000003333333111345567799*********998333332332111222222123555789*******************************************987554433248*****975256667777765111156789******85322222555443333333001111445689***************************************999654 PP

>> TIGR01521  FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.2e-08   8.2e-06       4      83 ..      90     183 ..      88     189 .. 0.67
   2 !    5.4   0.0    0.0025       1.7     144     199 ..     242     302 ..     219     314 .. 0.70
   3 !   15.7   0.0     2e-06    0.0013     255     292 ..     342     379 ..     331     387 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.2e-08
   TIGR01521   4 lrqlldhaaergygvpafnvnnleqilaimeaadktdspvilqasrg.....arsyage....vllrklvlaavee.....ypdipvvlhqdhg 83 
                 l  lldha ++g+ +p  nv     i + meaa+k   p+++  s+g     a + a++    + ++  v aa           +pvvlh dh 
  MMETSP1061-20121228|3067_1  90 LVDLLDHAKKEGFAIPGVNVVGTSSINSCMEAAKKYGGPIMVTFSKGggffiAGKAADDtddqASIAGCVAAAKHVhevaaLYGVPVVLHTDHC 183
                 5679*****************************************9933333233333311112344444444332001113357777777776 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0025
   TIGR01521 144 lgsletg.kgeaedghgfegaldrsqlltdpeeaa.efvkktkvdalava....igtshgay 199
                 l  +e g +g++edg+  +  +d ++l t+pee    + + ++v+  a +     g  hg y
  MMETSP1061-20121228|3067_1 242 LLEFELGvTGGEEDGVD-NTDVDSARLYTQPEEVWyAYEQLSQVENAAFTcaasFGNVHGVY 302
                 55566662467889987.5679***********75245555677765555001145556655 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 2e-06
   TIGR01521 255 gvpveeivkgikfgvrkvnidtdlrlaataalrrvaak 292
                 g  ve+i+  i  gv k+nidtd + a    +r+  ak
  MMETSP1061-20121228|3067_1 342 GSSVEDIQYAIEAGVIKMNIDTDTQWAFWDGIREYEAK 379
                 789*************************9999998876 PP

>> TIGR03745  conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.2e-05     0.029       8      67 ..      66     125 ..      59     127 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.2e-05
   TIGR03745   8 lllpqsalaaLPtveaPsrgegsgilqtlknylydgllllgLliaaiaflgvavaalaty 67 
                 ++  ++a+a+LP+  +P   +g+ ++++l    ++g+ + g+ ++ +  ++ +++a ++y
  MMETSP1061-20121228|3067_1  66 AAEETKAFAKLPASVKPGVVSGKALVDLLDHAKKEGFAIPGVNVVGTSSINSCMEAAKKY 125
                 456689*********************************************999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 1242.42
//
Query:       MMETSP1061-20121228|3089_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.89    6.7  12.5       0.95    6.6   8.6    1.1  1  TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL


Domain annotation for each model (and alignments):
>> TIGR02783  TrbL_P: P-type conjugative transfer protein TrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.6   0.00023      0.95     242     290 ..       8      54 ..       2      57 .] 0.42

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00023
   TIGR02783 242 lvkkipeiaaslvsgasvlgaggavaaaaavagvaaaggaalaaGalsa 290
                 l  +   i +s+   as+  + +  + + a+a+vaa++ aa  a+a++a
  MMETSP1061-20121228|3089_1   8 LLAFSRAICSSFHAVASS--SSSSDGSVVAGAAVAASASAAASAAASAA 54 
                 444444444555444443..44444444444444444444444444222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.42
# Mc/sec: 179.13
//
Query:       MMETSP1061-20121228|3088_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1753.57
//
Query:       MMETSP1061-20121228|3093_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   11.9   0.8      0.029   11.2   0.6    1.3  1  TIGR01220 Pmev_kin_Gr_pos: phosphomevalonate kinase


Domain annotation for each model (and alignments):
>> TIGR01220  Pmev_kin_Gr_pos: phosphomevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.6     7e-06     0.029     277     325 ..      90     135 ..      70     144 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7e-06
   TIGR01220 277 irknrqllarlddevgvdieteklkalcdlaeayggaakssGaGGGdcG 325
                 +r +   l++l++ +g       l+++     a ++aa +sG  GGdcG
  MMETSP1061-20121228|3093_1  90 VRSKATRLSDLSKTAGK---VLVLQQILQQMAAAAAAAAASGGAGGDCG 135
                 44444444455555544...44455555555566677778888899**9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|3094_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 423.75
//
Query:       MMETSP1061-20121228|3095_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 948.37
//
Query:       MMETSP1061-20121228|3098_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0099   13.6   2.0      0.012   13.4   0.2    1.9  2  TIGR01605 PYST-D: Plasmodium yoelii subtelomeric family PYST-D


Domain annotation for each model (and alignments):
>> TIGR01605  PYST-D: Plasmodium yoelii subtelomeric family PYST-D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.17     7e+02      29      41 ..     103     115 ..      97     119 .. 0.75
   2 !   13.4   0.2   2.8e-06     0.012       9      31 ..     150     172 ..     148     178 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.17
   TIGR01605  29 tnlIyVssrmfnq 41 
                  n+++++++ +  
  MMETSP1061-20121228|3098_1 103 ANFLSIFNIVITA 115
                 5788999998875 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 2.8e-06
   TIGR01605   9 ePIFGLGlSitLhLIFYNvntnl 31 
                  PIFGL lS +L  +  Nv tn+
  MMETSP1061-20121228|3098_1 150 PPIFGLDLSPILAFVLLNVLTNV 172
                 6********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1301.89
//
Query:       MMETSP1061-20121228|3104_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 389.02
//
Query:       MMETSP1061-20121228|3108_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 591.08
//
Query:       MMETSP1061-20121228|3109_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 860.80
//
Query:       MMETSP1061-20121228|3110_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.42
# Mc/sec: 267.12
//
Query:       MMETSP1061-20121228|3105_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1146.66
//
Query:       MMETSP1061-20121228|3113_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 982.00
//
Query:       MMETSP1061-20121228|3106_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 2408.80
//
Query:       MMETSP1061-20121228|3115_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|3119_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 913.36
//
Query:       MMETSP1061-20121228|3120_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1414.17
//
Query:       MMETSP1061-20121228|3117_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 1951.55
//
Query:       MMETSP1061-20121228|3121_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 1513.48
//
Query:       MMETSP1061-20121228|3124_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 622.23
//
Query:       MMETSP1061-20121228|3118_1  [L=1522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-15   56.0  34.1       0.03   12.0   0.2    9.3  9  TIGR02869 spore_SleB: spore cortex-lytic enzyme


Domain annotation for each model (and alignments):
>> TIGR02869  spore_SleB: spore cortex-lytic enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   7.3e-06      0.03     150     184 ..     533     567 ..     509     574 .. 0.80
   2 !   10.7   0.3   1.9e-05     0.079     159     184 ..     605     630 ..     578     640 .. 0.82
   3 !    6.7   0.4   0.00032       1.3     161     184 ..     659     682 ..     632     688 .. 0.79
   4 !    6.4   0.1    0.0004       1.6     163     184 ..     784     805 ..     763     812 .. 0.81
   5 !    8.3   0.1    0.0001      0.42     148     184 ..     880     915 ..     870     924 .. 0.78
   6 !    6.2   0.0   0.00045       1.9     161     185 ..    1003    1027 ..     985    1035 .. 0.79
   7 !    9.8   0.1   3.5e-05      0.14     158     184 ..    1124    1154 ..    1106    1161 .. 0.77
   8 !    5.9   0.0   0.00056       2.3     145     184 ..    1184    1227 ..    1179    1232 .. 0.87
   9 !    8.2   0.0   0.00011      0.46     160     184 ..    1254    1278 ..    1243    1287 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.3e-06
   TIGR02869 150 peeeakkavldainGwdPsggalyyfnpakatssW 184
                 p++ +  +  d ++  dP  ga yyfn+++   sW
  MMETSP1061-20121228|3118_1 533 PQSAEEDSSGDWVETTDPGSGATYYFNTKTNETSW 567
                 444455677899******************99999 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 1.9e-05
   TIGR02869 159 ldainGwdPsggalyyfnpakatssW 184
                  d  + +dPs g++yy+n+++   sW
  MMETSP1061-20121228|3118_1 605 SDWTETVDPSSGSIYYYNSKTGETSW 630
                 4677889**************99999 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.00032
   TIGR02869 161 ainGwdPsggalyyfnpakatssW 184
                  ++  dPs g  yy+n+ +   sW
  MMETSP1061-20121228|3118_1 659 WVEATDPSSGNTYYYNSITGETSW 682
                 48899*************999999 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.0004
   TIGR02869 163 nGwdPsggalyyfnpakatssW 184
                 +  dPs g  yy+n+ +   sW
  MMETSP1061-20121228|3118_1 784 ETTDPSTGNTYYYNSVTGETSW 805
                 678**************99999 PP

  == domain 5    score: 8.3 bits;  conditional E-value: 0.0001
   TIGR02869 148 ltpeeeakkavldainGwdPsggalyyfnpakatssW 184
                 +t+eee ++a + a + +dPs g  yy+n+ +   sW
  MMETSP1061-20121228|3118_1 880 VTTEEEPTEASQWA-ETLDPSTGNTYYYNSVTGETSW 915
                 55556666666555.789**************99999 PP

  == domain 6    score: 6.2 bits;  conditional E-value: 0.00045
   TIGR02869  161 ainGwdPsggalyyfnpakatssWi 185 
                    +  dPs g  yy+n+ +   sW 
  MMETSP1061-20121228|3118_1 1003 WAETTDPSTGDTYYYNSLTGETSWE 1027
                  45678**************999995 PP

  == domain 7    score: 9.8 bits;  conditional E-value: 3.5e-05
   TIGR02869  158 vldainGw....dPsggalyyfnpakatssW 184 
                  + d   Gw    dPs g +yy+n+++ + sW
  MMETSP1061-20121228|3118_1 1124 ANDLPAGWsevtDPSSGDVYYYNTETQVTSW 1154
                  5555566666669*************99998 PP

  == domain 8    score: 5.9 bits;  conditional E-value: 0.00056
   TIGR02869  145 qiyltpeeeakkavldainGw....dPsggalyyfnpakatssW 184 
                  q+ +  ee++ + v d  +Gw    dP+ g  yy n ++   sW
  MMETSP1061-20121228|3118_1 1184 QVATLAEETQAEPVDDLAEGWeevqDPTSGNSYYVNKETQETSW 1227
                  666677888999999999**988889*************99999 PP

  == domain 9    score: 8.2 bits;  conditional E-value: 0.00011
   TIGR02869  160 dainGwdPsggalyyfnpakatssW 184 
                  d  + +dP+ g  yy+n+++   sW
  MMETSP1061-20121228|3118_1 1254 DWAETLDPTSGETYYYNAKTGETSW 1278
                  556789***************9999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.20s 00:00:00.92 Elapsed: 00:00:01.04
# Mc/sec: 1931.61
//
Query:       MMETSP1061-20121228|3126_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 560.95
//
Query:       MMETSP1061-20121228|3131_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.10s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 1239.23
//
Query:       MMETSP1061-20121228|3122_1  [L=952]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (952 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 3141.34
//
Query:       MMETSP1061-20121228|3125_1  [L=738]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-12   43.4   8.7     0.0066   14.4   0.0    7.1  8  TIGR00756 PPR: pentatricopeptide repeat domain
  ------ inclusion threshold ------
        5.3    3.9  12.8        1.6    5.6   0.0    2.2  2  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.83   1.7e+03      19      30 ..     208     219 ..     208     221 .. 0.83
   2 !   11.0   0.0   4.1e-05     0.083       2      24 ..     273     295 ..     272     299 .. 0.93
   3 ?   -1.4   0.0      0.35   7.2e+02      27      34 ..     379     386 ..     363     387 .. 0.68
   4 !   14.4   0.0   3.2e-06    0.0066      11      34 ..     415     438 ..     414     439 .. 0.95
   5 !    5.2   0.0    0.0028       5.8       2      28 ..     481     507 ..     480     509 .. 0.94
   6 !   10.1   0.0   7.3e-05      0.15       1      34 [.     516     549 ..     516     550 .. 0.96
   7 ?    0.8   0.1     0.068   1.4e+02       1      29 [.     551     580 ..     551     586 .. 0.62
   8 ?   -3.4   0.1       1.4     3e+03       1      10 [.     587     596 ..     587     597 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.83
   TIGR00756  19 AlelfdeMkerg 30 
                 A++ ++eM+++g
  MMETSP1061-20121228|3125_1 208 ARRAMEEMIANG 219
                 678899***998 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 4.1e-05
   TIGR00756   2 tyntlisglckagrveeAlelfd 24 
                 ty  li +l+++g++++Al+l++
  MMETSP1061-20121228|3125_1 273 TYEKLITSLANEGSIDDALQLLR 295
                 999******************97 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.35
   TIGR00756  27 kergivPd 34 
                 k++g++Pd
  MMETSP1061-20121228|3125_1 379 KAEGCEPD 386
                 678****9 PP

  == domain 4    score: 14.4 bits;  conditional E-value: 3.2e-06
   TIGR00756  11 ckagrveeAlelfdeMkergivPd 34 
                 c++g+++ A++l+++M+erg+ P+
  MMETSP1061-20121228|3125_1 415 CENGSWKLAVKLLELMLERGLTPS 438
                 99*******************997 PP

  == domain 5    score: 5.2 bits;  conditional E-value: 0.0028
   TIGR00756   2 tyntlisglckagrveeAlelfdeMke 28 
                 ++nt+++++   g+ e  ++++d Mke
  MMETSP1061-20121228|3125_1 481 VFNTVVNACEVCGEEELTVRVLDAMKE 507
                 79***********************98 PP

  == domain 6    score: 10.1 bits;  conditional E-value: 7.3e-05
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPd 34 
                 +t+n+ ++ l+k+g++  ++ +   M+  gi+P+
  MMETSP1061-20121228|3125_1 516 ITFNIALKRLAKQGNTMACEGIIIGMLQGGIEPS 549
                 69*******************************8 PP

  == domain 7    score: 0.8 bits;  conditional E-value: 0.068
   TIGR00756   1 vtyntlisglcka.grveeAlelfdeMker 29 
                 vty+t i +++   ++ + A e+ ++Mk+r
  MMETSP1061-20121228|3125_1 551 VTYTTAIASCVADpKKSDVAAEWIKRMKSR 580
                 688888888875534446666666666665 PP

  == domain 8    score: -3.4 bits;  conditional E-value: 1.4
   TIGR00756   1 vtyntlisgl 10 
                 +tynt   ++
  MMETSP1061-20121228|3125_1 587 ITYNTAFASC 596
                 69**988777 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0   0.00076       1.6      40     126 ..     141     232 ..      88     237 .. 0.66
   2 ?   -1.1   6.8     0.084   1.7e+02       7      81 ..     644     723 ..     641     736 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00076
   TIGR01554  40 eidkleaeierleea...aaeeeakeaasgeagkeeeeeeeakeeaaea.fraylrrgddalaee...akalstgtdsdgGylvPeelsteIie 126
                 +++ l  ei +l e+   +++  + ++ +++ gk+++ee+e +e+  ++ ++ay++++  a+ ++   ++a+ +  +  +Gy+vP e++++ i+
  MMETSP1061-20121228|3125_1 141 DFNSLLREISSLSEKvhwKTASRRFKQLMKRFGKGAPEEREIPEKVFTEiLTAYMQSRLHAARAAepaRRAMEEMIA--NGYMVPSEIANSCIK 232
                 44445555555555588844444555555555555555555566666666889999998888888887888888855..*********998776 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.084
   TIGR01554   7 klaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleea.....aaeeeakeaasgeagkeeeeeeeakee 81 
                   ++l+k+++++ ++++++e+e+e +      + +d l++++++l e+     ++e+e+kea+++ +++ e +eee +ee
  MMETSP1061-20121228|3125_1 644 LAKNLTKQMEEQIKSGDIDEDEAESEIRGPFLELVDYLQSDLAELAEKqkkfvRNELEEKEAEAKAESTIEDAEEEVDEE 723
                 56788999999999999999999888777799999999999999999988888777777777777777777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 2563.37
//
Query:       MMETSP1061-20121228|3128_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1688.36
//
Query:       MMETSP1061-20121228|3133_1  [L=860]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (860 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       461  (0.112384); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.14s 00:00:00.74 Elapsed: 00:00:00.66
# Mc/sec: 1719.86
//
Query:       MMETSP1061-20121228|3137_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 939.76
//
Query:       MMETSP1061-20121228|3140_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 496.53
//
Query:       MMETSP1061-20121228|3139_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1398.37
//
Query:       MMETSP1061-20121228|3138_1  [L=954]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.1e-198  656.2   0.0   1.2e-197  655.4   0.0    1.3  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    3.2e-73  244.8   0.0    4.6e-73  244.3   0.0    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    2.2e-66  222.5   0.0    3.2e-66  221.9   0.0    1.2  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    3.4e-39  132.7   0.0    5.6e-39  132.0   0.0    1.2  1  TIGR03689 pup_AAA: proteasome ATPase
    1.1e-05   22.0   1.2    2.3e-05   21.0   0.0    2.0  3  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    1.6e-05   21.4   0.0    3.4e-05   20.3   0.0    1.4  1  TIGR00763 lon: ATP-dependent protease La
    3.7e-05   20.7   0.0     0.0022   14.8   0.0    2.4  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    6.6e-05   19.9   0.0    0.00012   19.0   0.0    1.4  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00016   18.7   0.0    0.00029   17.8   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0052   12.8   0.3       0.28    7.1   0.0    2.8  3  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
  ------ inclusion threshold ------
       0.03   11.0   1.6       0.13    8.8   0.1    2.6  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
       0.03   10.7   0.0       0.05   10.0   0.0    1.3  1  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  655.4   0.0  3.6e-200  1.2e-197       3     495 ..     407     904 ..     405     905 .. 0.93

  Alignments for each domain:
  == domain 1    score: 655.4 bits;  conditional E-value: 3.6e-200
   TIGR01241   3 levllsllplilllvglfllflrq.........akgaggs.rifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag.lgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlk..kvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPeedklllskkellakiavllgGrvaeeiifgevttGasnDlkkatkiaramvtelGmseklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkell 495
                 ++ +++l p +l ++g+ + ++r          + g+gg   if++gks+ak+++ e+v+v+fkdvaG+++ak e++e+v+fL +p++ft+lGak+PkG+ll+GpPGtGktLlakavaGeagvpf+sisGsdf+emfvGvG srvrDlf++a+ n+PciifiDeiDavGr+rg+g ++ggndere+tLnqlLvemDGf+ ++gv+vla+tnr d+LD+aL rPGrfDrq++vd+Pdl+gr+ei+ vh++ ++l+ e +    ++a  tpGf+Gad+anl+neaa++aar++ ++vt +++e+a+drvi Gle  ++++sekekk+vayheaGha++g+++++ad++ kvtiipr   alG++++lP+e  +l +++++++ +  +l+Gr+aee++fg+vttGas+Dlk++t+++ + + ++Gm +++g++ay +++ + + g     +k ys++ta+++D e ++++++ay+++ e+++e+kee+e++a+ Lle+eti+++++ el+
  MMETSP1061-20121228|3138_1 407 VQEFIKLTP-MLAMLGILFYYSRGlmgggaaggMGGGGGPgGIFQVGKSNAKKVNPETVNVSFKDVAGCQQAKLEVMEFVQFLSSPEQFTRLGAKTPKGALLCGPPGTGKTLLAKAVAGEAGVPFYSISGSDFIEMFVGVGPSRVRDLFKEARANTPCIIFIDEIDAVGRQRGRGgFSGGNDERENTLNQLLVEMDGFSPTTGVVVLAGTNRVDILDQALTRPGRFDRQITVDRPDLQGRKEIFGVHLQGLTLEGEAEEYsgRMAGLTPGFAGADIANLCNEAAIVAARRKADNVTFSDFEKATDRVIGGLES-NKIMSEKEKKIVAYHEAGHAVAGWFLEHADPLLKVTIIPRASgALGFAQYLPKE-VFLRTQEQIMDIVCKTLAGRAAEEVFFGRVTTGASDDLKRVTQMVYSTIQTYGMNSRVGQLAYPQND-DGMPG-----DKPYSDSTAEAMDDEARAMVDSAYQRTIELIRERKEEVEKVAQLLLERETITHDDMIELI 904
                 566777788.55555555555555444444333333344334************************************************************************************************************************************99*****************************************************************************9766544369***********************************************986.6899*************************************99*********99.9**************************************************************9665.44444.....589*****************************************************9986 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.3   0.0   1.4e-75   4.6e-73     115     363 ..     462     712 ..     453     713 .. 0.95

  Alignments for each domain:
  == domain 1    score: 244.3 bits;  conditional E-value: 1.4e-75
   TIGR01242 115 erpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldss.tsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvd..leelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                 e  +vs++d+ G ++   e+ e v++ l  pe f ++G + pkG ll GppGtGktllakava e+   f  + gs++++ ++G G + vr++fk a+  +p+iifideida++ +r     ++G+ e + tl qll e+dGf p   v v+a tnr+dild al rpGrfdr i v  pdl+Gr ei+++h + + l ++ +     +a lt G++Gad+  ++ ea + a r++ d+vt +df ka ++v
  MMETSP1061-20121228|3138_1 462 ETVNVSFKDVAGCQQAKLEVMEFVQF-LSSPEQFTRLGAKTPKGALLCGPPGTGKTLLAKAVAGEAGVPFYSISGSDFIEMFVGVGPSRVRDLFKEARANTPCIIFIDEIDAVGRQRGRGGfSGGNDERENTLNQLLVEMDGFSPTTGVVVLAGTNRVDILDQALTRPGRFDRQITVDRPDLQGRKEIFGVHLQGLTLEGEAEeySGRMAGLTPGFAGADIANLCNEAAIVAARRKADNVTFSDFEKATDRV 712
                 6789*******************997.99****************************************************************************************987625678999*********************************************************************99887223579*****************************************98 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.9   0.0   9.3e-69   3.2e-66     437     694 ..     453     714 ..     447     784 .. 0.90

  Alignments for each domain:
  == domain 1    score: 221.9 bits;  conditional E-value: 9.3e-69
   TIGR01243 437 psalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadl...seavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvd..leelakktegytgadieavvreaalaalresvksvakekleaeekeilk 694
                  s  ++v  e  nv ++d+ g +++k e+ e v++ l  +e f +lg + pkg ll gppgtgktllakava e+g  f ++ g + +  +vg    ++r++f+ ar  +p+iif+deida+  +rg+     ++   ++ +nqll e+dg+ ++++vvv+a tnr dild al rpgr+dr i v  pd + r+eif +h + l+l  + +    ++a  t g++gadi+ ++ eaa+ a r+   +v+   +e+  + ++ 
  MMETSP1061-20121228|3138_1 453 KSNAKKVNPETVNVSFKDVAGCQQAKLEVMEFVQF-LSSPEQFTRLGAKTPKGALLCGPPGTGKTLLAKAVAGEAGVPFYSISGSDFIEMFVGVGPSRVRDLFKEARANTPCIIFIDEIDAVGRQRGRGGfsgGNDERENTLNQLLVEMDGFSPTTGVVVLAGTNRVDILDQALTRPGRFDRQITVDRPDLQGRKEIFGVHLQGLTLEGEAEeySGRMAGLTPGFAGADIANLCNEAAIVAARRKADNVTFSDFEKATDRVIG 714
                 566778888999*********************98.99****************************************************************************************986411144566789******************************************************************87766223579**************************9988888888887776644 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.0   1.7e-41   5.6e-39     172     394 ..     459     668 ..     448     688 .. 0.88

  Alignments for each domain:
  == domain 1    score: 132.0 bits;  conditional E-value: 1.7e-41
   TIGR03689 172 vleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvss...dvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleedlaeadgd 394
                 v  e+ +v+++d+ G ++   ++ + v++ +  +e +++ + k+PkG ll GPPG+Gktl+akava            a   f +i G ++++ +vG    ++r +f+ ar     ++P ++f+de+d++ r rG G  s   d     + qll e+dG      v+v+  +nr+d++d a+ rPGr+d +i ++rPd ++ ++i+  +l+  l le +  e++g 
  MMETSP1061-20121228|3138_1 459 VNPETVNVSFKDVAGCQQAKLEVMEFVQF-LSSPEQFTRLGAKTPKGALLCGPPGTGKTLLAKAVAGE----------AGVPFYSISGSDFIEMFVGVGPSRVRDLFKEARA----NTPCIIFIDEIDAVGRQRGRGGFSggnDERENTLNQLLVEMDGFSPTTGVVVLAGTNRVDILDQALTRPGRFDRQITVDRPDLQGRKEIFGVHLQ-GLTLEGEAEEYSGR 668
                 5678999**********999999999996.6789*******************************964..........334699************************9996....68*****************8754434466667789**********************************************************96.57777777777765 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   6.8e-08   2.3e-05     311     446 ..     501     635 ..     496     639 .. 0.72
   2 ?   -2.2   0.0       0.7   2.4e+02      15      45 ..     798     830 ..     789     837 .. 0.78
   3 ?   -2.9   0.1       1.2     4e+02     178     212 ..     860     897 ..     848     901 .. 0.65

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 6.8e-08
   TIGR03922 311 rskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvek.rdg...akddfGleaidtLLarlEndR.drlvviiAGYekdlDklLevneGLrsRFtrki 446
                 + k  ll GPPGtGkt +A++va   aG+          +s +d+i  ++g    +  +l  +a      ++F+DE+ a+  + + g    ++d   + +++LL+ ++       vv+ AG +  +D +L+      +RF r+i
  MMETSP1061-20121228|3138_1 501 TPKGALLCGPPGTGKTLLAKAVAGE-AGVP------FYSISGSDFIEMFVGVGPSRVRDLFKEARANtpcIIFIDEIDAVGRQrGRGgfsGGNDERENTLNQLLVEMDGFSpTTGVVVLAGTN-RVD-ILDQALTRPGRFDRQI 635
                 567789***************9975.6765......567999*******************9987533339********98773222122356667789********9865145577778853.444.3333333445666665 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.7
   TIGR03922  15 WlgriaaGdvd..lavlekvwataetfGvlqre 45 
                 + gr+++G +d  ++v + v++t++t+G+ +r 
  MMETSP1061-20121228|3138_1 798 FFGRVTTGASDdlKRVTQMVYSTIQTYGMNSRV 830
                 6788888866533688999*********99886 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 1.2
   TIGR03922 178 avavvdlayakalvl...RalgeedeAqelLeklyand 212
                 a a+vd ay +++ l   R++  e  Aq lLe+ ++++
  MMETSP1061-20121228|3138_1 860 ARAMVDSAYQRTIELireRKEEVEKVAQLLLERETITH 897
                 34588999999875421255555667899999888776 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   9.8e-08   3.4e-05     330     435 ..     473     576 ..     461     584 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 9.8e-08
   TIGR00763 330 glkkvKeRilEylavk........klrkklkgkilclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgss 435
                 g ++ K  ++E++              k+ kg++lc  GPPG GKt lak++A   +  f  +s  G +D  e+      +vG  P ++ + +k+++ + P +i++DEiD +g++
  MMETSP1061-20121228|3138_1 473 GCQQAKLEVMEFVQFLsspeqftrLGAKTPKGALLC--GPPGTGKTLLAKAVAGEAGVPFYSIS--G-SDFIEM------FVGVGPSRVRDLFKEARANTPcIIFIDEIDAVGRQ 576
                 556666666666665545555542334556777766..**********************9887..4.577775......9********************4567******9963 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.4e-06    0.0022      46     103 ..     501     556 ..     496     559 .. 0.91
   2 ?    3.8   0.0     0.014       4.8     244     282 ..     558     599 ..     555     659 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.4e-06
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvda 103
                 +Pk  l+ G+ G Gkt +a+ +a  a++Pf  +  + f e+ +vG    s vrdl + 
  MMETSP1061-20121228|3138_1 501 TPKGALLCGPPGTGKTLLAKAVAGEAGVPFYSISGSDFIEM-FVGVG-PSRVRDLFKE 556
                 8***************************************7.89965.6889999876 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.014
   TIGR00390 244 rveesGiifideidkiakkg...essgadvsreGvqrdllPi 282
                 r++   iifideid + ++      sg +  re     ll  
  MMETSP1061-20121228|3138_1 558 RANTPCIIFIDEIDAVGRQRgrgGFSGGNDERENTLNQLLVE 599
                 677788*********987642224566666666666666655 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.6e-07   0.00012     120     197 ..     505     576 ..     449     597 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.6e-07
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                  ll Gp G+Gktlla+++a e  vpf     + + e  +vG      +  l+++a  ++      ii+ideid + r+
  MMETSP1061-20121228|3138_1 505 ALLCGPPGTGKTLLAKAVAGEAGVPFYSISGSDFIEM-FVGVGPSR-VRDLFKEARANT----PCIIFIDEIDAVGRQ 576
                 589***********************87777777775.88876655.578888887765....58*********9997 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.6e-07   0.00029      31      95 ..     503     575 ..     492     578 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 8.6e-07
   TIGR00635  31 dhvllyGPPGlGkttlakiiakelgvklkitsgpal......ekpgDlaailta..leegdvlfiDeihrlsk 95 
                    ll GPPG Gkt lak +a e gv    +sg  +        p+ +  ++ +   ++  ++fiDei ++ +
  MMETSP1061-20121228|3138_1 503 KGALLCGPPGTGKTLLAKAVAGEAGVPFYSISGSDFiemfvgVGPSRVRDLFKEarANTPCIIFIDEIDAVGR 575
                 5679***********************9999998652222221244444444441134556889999888765 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00081      0.28     485     525 ..     501     540 ..     495     547 .. 0.86
   2 ?    2.2   0.0     0.025       8.5     264     311 ..     548     598 ..     541     654 .. 0.69
   3 ?   -1.2   0.0      0.27        91     156     204 ..     840     892 ..     777     930 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00081
   TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvellrfDmseyme 525
                 +P g+ l  Gp G Gkt lak++a e gv +  +  s++ e
  MMETSP1061-20121228|3138_1 501 TPKGA-LLCGPPGTGKTLLAKAVAGEAGVPFYSISGSDFIE 540
                 56666.568**********************9999888887 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.025
   TIGR02639 264 erlkevveeiekeedailfiDeihti...vgagatsggsldasnlLkPala 311
                  r++++ +e +++   i+fiDei ++    g g  sgg+ +  n L   l 
  MMETSP1061-20121228|3138_1 548 SRVRDLFKEARANTPCIIFIDEIDAVgrqRGRGGFSGGNDERENTLNQLLV 598
                 69999999***************9984334778888888888888877764 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.27
   TIGR02639 156 e....eekeekkekealekytvdltekakkgkidPliGredelertiqvLcrr 204
                 +    ++  +++++ea++  +  + + a +  i+ +  r++e+e++ q+L  r
  MMETSP1061-20121228|3138_1 840 DgmpgDKPYSDSTAEAMDDEARAMVDSAYQRTIELIRERKEEVEKVAQLLLER 892
                 23333334446777888888888888888888888888888888888888766 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   0.00039      0.13      37      61 ..     499     523 ..     492     527 .. 0.88
   2 ?   -4.2   0.0       3.7   1.3e+03     128     141 ..     560     573 ..     553     576 .. 0.78
   3 ?   -0.4   0.1      0.26        88     247     275 ..     684     712 ..     682     729 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00039
   TIGR02928  37 gsrpsnvliyGktGtGKtavtkkvl 61 
                  ++p+  l+ G++GtGKt+ +k+v 
  MMETSP1061-20121228|3138_1 499 AKTPKGALLCGPPGTGKTLLAKAVA 523
                 5789999***************997 PP

  == domain 2    score: -4.2 bits;  conditional E-value: 3.7
   TIGR02928 128 edsliivLDEiDkl 141
                 ++  ii +DEiD +
  MMETSP1061-20121228|3138_1 560 NTPCIIFIDEIDAV 573
                 55679999****86 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.26
   TIGR02928 247 lLreageiAeeegsekvteehvekAqeki 275
                 l  ea+ +A ++++++vt ++ ekA +++
  MMETSP1061-20121228|3138_1 684 LCNEAAIVAARRKADNVTFSDFEKATDRV 712
                 55689999*****************9987 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00015      0.05     214     233 ..     505     524 ..     459     527 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00015
   TIGR00368 214 llllGPPGsGktllakrlqg 233
                  ll GPPG+Gktllak + g
  MMETSP1061-20121228|3138_1 505 ALLCGPPGTGKTLLAKAVAG 524
                 5899************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      196  (0.0477816); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.70u 0.19s 00:00:00.88 Elapsed: 00:00:00.62
# Mc/sec: 2030.93
//
Query:       MMETSP1061-20121228|3142_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-14   50.0  17.7    5.6e-12   43.7   6.9    2.8  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
  ------ inclusion threshold ------
      0.031   11.5   0.0      0.052   10.8   0.0    1.3  1  TIGR01006 polys_exp_MPA1: polysaccharide export protein, MPA1 family
          4    5.4  12.5       0.44    8.5   1.5    2.8  2  TIGR01260 ATP_synt_c: ATP synthase F0, C subunit


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   6.9   4.1e-15   5.6e-12       2     106 ..      27     143 ..      26     146 .. 0.87
   2 !    9.3   0.7   0.00021      0.28      37      68 ..     152     183 ..     143     190 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 4.1e-15
   TIGR01100   2 fgvlGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkekek..ysl..........ykgfihlgaGlavGlsglaaGlaiGivGda 106
                 f+ +G+a  l +s +Gaa+G   +g  +   +v  p +  k+++ v++    aiyGl++a+++ +++ke e+  y+l          y+g+  ++aGl+vGl+ +a+G+++G++G +
  MMETSP1061-20121228|3142_1  27 FANFGVALGLGLSIVGAAWGIWLTGSSLVGAAVKAPRIKSKNLVSVIFCEATAIYGLIMAIILGNKIKEPETvgYYLeegwdyngyyYAGYGMFSAGLSVGLTNIASGVSVGLAGSS 143
                 788999999***********************************************************98765666533333222225678899********************976 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00021
   TIGR01100  37 pelilksiipvvmaGiiaiyGlvvavliagsl 68 
                 + l +k +i  ++a  ++i+G++v ++ +++ 
  MMETSP1061-20121228|3142_1 152 ASLFVKILIVEIFASALGIFGIIVGIIQSNAC 183
                 67899999******************988765 PP

>> TIGR01006  polys_exp_MPA1: polysaccharide export protein, MPA1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.8e-05     0.052     170     210 ..      60     100 ..      55     105 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.8e-05
   TIGR01006 170 vsPkiklnllvglllGlvvalvivllkellDkrvkreedvE 210
                  +P+ik + lv+++     a+  +++  +l +++k++e v 
  MMETSP1061-20121228|3142_1  60 KAPRIKSKNLVSVIFCEATAIYGLIMAIILGNKIKEPETVG 100
                 58************************************986 PP

>> TIGR01260  ATP_synt_c: ATP synthase F0, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.5   0.00032      0.44       3      55 ..      41      89 ..      28      90 .. 0.84
   2 ?    1.6   2.0     0.045        61      28      54 ..     152     178 ..     129     182 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00032
   TIGR01260  3 iGaaiGigilggKflEsaARQPelagllrtkmfivaglvdaipiiavviaLll 55
                +Gaa Gi + g+  + +a +    a+ +++k ++ +   +a++i+++ +a++l
  MMETSP1061-20121228|3142_1 41 VGAAWGIWLTGSSLVGAAVK----APRIKSKNLVSVIFCEATAIYGLIMAIIL 89
                68888887777766666555....56788999999999************997 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.045
   TIGR01260  28 gllrtkmfivaglvdaipiiavviaLl 54 
                 ++l +k++iv   + a +i+++ ++++
  MMETSP1061-20121228|3142_1 152 ASLFVKILIVEIFASALGIFGIIVGII 178
                 578899****************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1213.04
//
Query:       MMETSP1061-20121228|3144_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1395.31
//
Query:       MMETSP1061-20121228|3148_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1351.15
//
Query:       MMETSP1061-20121228|3155_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 418.92
//
Query:       MMETSP1061-20121228|3149_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.40
# Mc/sec: 2177.82
//
Query:       MMETSP1061-20121228|3153_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 2003.13
//
Query:       MMETSP1061-20121228|3158_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1051.51
//
Query:       MMETSP1061-20121228|3164_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 565.67
//
Query:       MMETSP1061-20121228|3165_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1886.34
//
Query:       MMETSP1061-20121228|3159_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1766.32
//
Query:       MMETSP1061-20121228|3166_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 458.49
//
Query:       MMETSP1061-20121228|3161_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 972.32
//
Query:       MMETSP1061-20121228|3160_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   11.4   0.1      0.089   10.6   0.0    1.3  1  TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain
        1.8    4.6  17.8        2.3    4.2  12.3    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01901  adhes_NPXG: filamentous hemagglutinin family N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.3e-05     0.089      12      57 ..     179     225 ..     176     244 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.3e-05
   TIGR01901  12 ggavlfnnpsaaklilnrVtggsaSqiqGalevnG.kanlfllNpnG 57 
                 +++ +f+n +  k   ++V+gg   + +G l ++G +  l+++Np G
  MMETSP1061-20121228|3160_1 179 QEIEEFENAKRKKQLQAEVDGGGLAKAAGLLGAAGlSLGLIVANPFG 225
                 57778999999999*******************************88 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  12.3    0.0011       2.3     245     442 ..     257     428 ..     161     448 .. 0.32

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0011
   TIGR00934 245 fakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssiekns....qqnltrlaktksfdd..skavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldseenayptyndeeedsrha 442
                  +k+ e+++                          i+ +++++ +s  + s  + +++  k ++   + ek      +     + ++ + +   ++ + le +k      ++++ e +  k+ +k   ++ ka++  kk+ + + + ++l +k ++ak ++ +  +++ +k ++k +e+e   + +ee+++++ ++ +ed + +
  MMETSP1061-20121228|3160_1 257 AVKKVEKKK--------------------------INAQRKAELKSGYDLSLDAEVKSDEKAAAKALKEEKAAeavvK-----KDQEAAKEAakKEEAALEAEKKAAEDLKKQEAEAKALKEAEKKAADEAKAKELAKKEKEAEAKAKELATKEKAAKAAEAKAAAEQ-EKAEAKAREDEAKAKAAEEKTKAAEAKAKEDEAAQ 428
                 222222222..........................2222222222222222222222222222222222222111110.....1111111110111111111111111111111111111112222222222222222222222222222222222222222222222.22223333333333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       846  (0.206241); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        72  (0.0175524); expected 4.1 (0.001)
Passed Fwd filter:                        35  (0.00853242); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.20u 0.20s 00:00:01.40 Elapsed: 00:00:00.97
# Mc/sec: 699.41
//
Query:       MMETSP1061-20121228|3173_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.2    5.9   9.2        4.7    5.3   6.3    1.4  1  TIGR03931 T7SS_Rv3446c: type VII secretion-associated protein, Rv3446c family
        5.1    4.8  12.4        3.3    5.4   4.0    2.0  2  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR03931  T7SS_Rv3446c: type VII secretion-associated protein, Rv3446c family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.3    0.0023       4.7       2      55 ..       6      57 ..       5      70 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0023
   TIGR03931  2 lavalavVivagvaaalvvvgegaatgdtgkakeresetaeasaeseepapptp 55
                +a+a+a+V+va+++a+l ++   ++ ++ +  +e++ +++  ++  +++a+ t+
  MMETSP1061-20121228|3173_1  6 AAAAAAAVAVAVAVASLCAFW--DPLAAVAWREEDPRPSSRVPSSCHNTATATA 57
                799****************99..5555555555555555555444444444443 PP

>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   4.0    0.0016       3.3     127     149 ..       3      25 ..       1      39 [. 0.56
   2 ?    4.2   0.3    0.0038       7.9     122     143 ..      49      70 ..      41      72 .] 0.77

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0016
   TIGR04032 127 vvaaVAvatvalaavavnpavds 149
                 +vaa+A+a+ +++avav    ++
  MMETSP1061-20121228|3173_1   3 AVAAAAAAAAVAVAVAVASLCAF 25 
                 44444444444444455444444 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0038
   TIGR04032 122 vlavvvvaaVAvatvalaavav 143
                  ++ + ++aVA  + +++++a+
  MMETSP1061-20121228|3173_1  49 CHNTATATAVAITIAIAITIAI 70 
                 5677788888888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 413.18
//
Query:       MMETSP1061-20121228|3180_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|3177_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.26
# Mc/sec: 2771.77
//
Query:       MMETSP1061-20121228|3184_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 511.46
//
Query:       MMETSP1061-20121228|3175_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.2    4.9  11.6       0.36    8.4   0.3    3.6  4  TIGR03560 F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family


Domain annotation for each model (and alignments):
>> TIGR03560  F420_Rv1855c: probable F420-dependent oxidoreductase, Rv1855c family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.2     0.062   2.5e+02       9      40 ..      99     131 ..      93     156 .. 0.74
   2 ?    0.7   0.1      0.02        83       9      54 ..     177     222 ..     172     234 .. 0.66
   3 ?    8.4   0.3   8.8e-05      0.36      10      56 ..     253     300 ..     247     310 .. 0.87
   4 ?    0.6   0.0     0.021        85      10      40 ..     329     360 ..     324     376 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.062
   TIGR03560   9 qetyedllavaraae.dagfdalfvsDHflqle 40 
                 ++ ++dl+ + ++a  ++g+d ++    + + e
  MMETSP1061-20121228|3175_1  99 DKDWDDLTPQQQTAAkTMGYDEVTWCTDYDEYE 131
                 568999998888776599**9987666565544 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.02
   TIGR03560   9 qetyedllavaraae.dagfda.lfvsDHflqleevgpaeepmleayt 54 
                 ++ ++dl+   ++a  d gfd+ ++  DH    + +++a++ + e ++
  MMETSP1061-20121228|3175_1 177 EKDWDDLTPELQTAAkDLGFDKkMWCEDHEEY-D-EEEADNWLDEDWV 222
                 67889988766665549***963788898543.2.2345555555555 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 8.8e-05
   TIGR03560  10 etyedllavaraae.dagfdalfvsDHflqleevgpaeepmleayttl 56 
                 + +++l+++ ++a  + g+d+ +  D f + ee+++ae+ + e ++ l
  MMETSP1061-20121228|3175_1 253 KDWPELTKAQQQAAmTLGYDKQTWCDDFAEWEEEEEAENWLDEDWVDL 300
                 6799998887777669***********************999999987 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.021
   TIGR03560  10 etyedllavaraae.dagfdalfvsDHflqle 40 
                 + +e+l+++ ++a  + g++  +  D f + e
  MMETSP1061-20121228|3175_1 329 KDWEELTRAQQQAAsKLGYTEEIWCDDFDEYE 360
                 6799998877665559****999999998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1738.49
//
Query:       MMETSP1061-20121228|3186_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1597.07
//
Query:       MMETSP1061-20121228|3188_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 240.41
//
Query:       MMETSP1061-20121228|3182_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-20   70.3   1.3    8.2e-11   38.2   0.0    2.1  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      5e-16   56.1   0.0    2.9e-13   47.0   0.0    2.1  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.9e-15   53.4   1.6    2.9e-07   26.9   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    3.8e-13   46.9   0.0    1.2e-09   35.3   0.0    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    3.1e-12   43.8   0.3    3.6e-06   23.8   0.1    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    4.7e-07   27.1   0.0    1.3e-05   22.3   0.0    2.3  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    6.3e-07   25.8   2.8    2.4e-06   23.9   1.1    2.0  2  TIGR00631 uvrb: excinuclease ABC subunit B
    8.5e-06   22.8   0.1     0.0061   13.4   0.1    2.2  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
    0.00081   15.6   0.0     0.0014   14.9   0.0    1.3  1  TIGR00580 mfd: transcription-repair coupling factor
     0.0074   13.3   0.0      0.013   12.5   0.0    1.3  1  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
     0.0078   12.6   0.0       0.09    9.1   0.0    2.1  2  TIGR00595 priA: primosomal protein N'
  ------ inclusion threshold ------
        6.4    2.0  11.2         12    1.2   7.8    1.4  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.0   2.4e-13   8.2e-11      15     158 ..     116     256 ..     109     276 .. 0.81
   2 !   30.0   0.8   7.2e-11   2.5e-08     247     364 ..     491     604 ..     489     613 .. 0.90

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 2.4e-13
   TIGR04121  15 rafQkevleaaeeg..esglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRG 158
                 ++ Q++++  + ++   + l  a+TG+GKT a +lp+l +la    +  g+ ++ ++P + Lak+i++ + a  +  ++e    +  G  ++++ +  ++++p+ ++ Tp  la ll  ++   +++++r +v+DE   Ll+   G
  MMETSP1061-20121228|3182_1 116 TPVQRQIVPFLLRNpsAHVLALASTGSGKTAAFVLPILHKLA---LDPYGIYAVVVSPTRELAKQIHQQVLALGSSYNVESALVV-GGMDPTKQSSVLEHRKPHFVVATPGRLAELLRGPS-PPRLAHVRFLVLDEADRLLAAHSG 256
                 56666666666655114568889******************9...6667****************99988777666666655544.4555667777888999**************98876.6679*************9998877 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 7.2e-11
   TIGR04121 247 karttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskillvptnalEll 364
                 kar+t+vF+ t  +a l+   L+e+  e   ++al H+ l+++ R    a++k+ ++r++v+T     G+D   vdlv+q   p++    + RiGR++ +  +   i lv+ + + l+
  MMETSP1061-20121228|3182_1 491 KARSTIVFVATCERAALVSGILTEVGVE---NVAL-HSLLSQNRRLAALAKFKSQQVRVLVATDIASRGLDVPSVDLVLQSELPRNPVSYVHRIGRTARAGRRGRAISLVSEQDVALV 604
                 579**********************999...8999.5899********************************************************9987777777777777666655 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0011      0.39       8      76 ..     109     185 ..     106     224 .. 0.71
   2 !   47.0   0.0   8.4e-16   2.9e-13     223     338 ..     491     606 ..     477     638 .. 0.94

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0011
   TIGR01389   8 vFGyeeFRggqeeiieevldg..rdvlavlPtGGGkslCYqvPaLllkgl......tvvisPLisLmkDqvdqLraa 76 
                   G+++  + q +i+  +l++   +vla+  tG Gk   + +P L +  l      +vv+sP   L k   +q+ a 
  MMETSP1061-20121228|3182_1 109 ALGFQKPTPVQRQIVPFLLRNpsAHVLALASTGSGKTAAFVLPILHKLALdpygiyAVVVSPTRELAKQIHQQVLAL 185
                 67999999***********9722458999**************88764432223347999*9887766533333333 PP

  == domain 2    score: 47.0 bits;  conditional E-value: 8.4e-16
   TIGR01389 223 reksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkr 338
                 + +s i++ ++ ++   +   L++ g+e +a h+ ls++ R  a+ kF  ++v+v+vat     G+d + v  v+  +lP+n  sy    GR  R G++  ai l se+D+al + 
  MMETSP1061-20121228|3182_1 491 KARSTIVFVATCERAALVSGILTEVGVENVALHSLLSQNRRLAALAKFKSQQVRVLVATDIASRGLDVPSVDLVLQSELPRNPVSYVHRIGRTARAGRRGRAISLVSEQDVALVHA 606
                 6699***********************************************************************************************************99765 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   8.5e-10   2.9e-07      26     183 ..     104     267 ..      86     296 .. 0.75
   2 !   25.3   0.5   2.6e-09     9e-07     314     469 ..     526     680 ..     491     692 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 8.5e-10
   TIGR03817  26 vaaleaaGieapw..qhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp.ratalylaPtkalaadqlravkelee.rdvraatydGdtpaeerewirek..aryvltnPdmlhlgilpsharWakflralryvvvdechsy...rGvfGshvalvlrr 183
                 v++++a G ++p   q q+    l +   hv   ++t sGk+ a+ lP+l +la dp +  a+ ++Pt+ la+   ++v +l +  +v++a   G  +  +++ + e+   ++v++ P  l   +l+  +     l ++r++v+de+ +       f  +va++l  
  MMETSP1061-20121228|3182_1 104 VDTCRALGFQKPTpvQRQIVPFLLRNPSAHVLALASTGSGKTAAFVLPILHKLALDPyGIYAVVVSPTRELAKQIHQQVLALGSsYNVESALVVGGMDPTKQSSVLEHrkPHFVVATPGRLAE-LLRGPSP--PRLAHVRFLVLDEADRLlaaHSGFEKDVAELLLH 267
                 556667777765411444444556667789999999********************9567899*******************9867899999988888777777766512579******9965.6665543..4477899999999986511133466666666655 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 2.6e-09
   TIGR03817 314 laedrr.eleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvarddPldtylvhhPealldkpveat..vldPdnPyvlgpqllaaa.aelplteadlelfgpaaeevvdklveqgllrrrpagwfvterer 469
                 l+++rr +  +++k+ +++ ++at+    G+d+  +d v+ +  P    s+  ++Gr+ r+g++  ++ + +++  d  lvh  e l ++p+e++  ++d d   +lgp   aa  a   l +     f++ +++  ++ v++   r+r ++   ++ +r
  MMETSP1061-20121228|3182_1 526 LSQNRRlAALAKFKSQQVRVLVATDIASRGLDVPSVDLVLQSELPRNPVSYVHRIGRTARAGRRGRAISLVSEQ--DVALVHAAEELTGRPLEKCteITDEDAIALLGPVTKAARlAKRKLMDIG---FDELVKKFKERKVRDRKERQRIERSLRRQAKR 680
                 5566662345789999**********************************************999888776665..789**************98568999999999997776631233343333...33333444444444444444444444444444 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00029       0.1       7      93 ..     110     208 ..     107     225 .. 0.74
   2 !   35.3   0.0   3.4e-12   1.2e-09     225     339 ..     491     605 ..     487     668 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00029
   TIGR00614   7 fglesfrpvqlevinavlegr..dalvvmatGgGksLCyqlpavvsdgl......tlvisPLisL...meDqvlqLka.sdisatlLnsaqskeeakev 93 
                  g+++  pvq +++   l++    +l + +tG Gk   + lp +    l      ++v+sP + L   ++ qvl L +  +++++l+ +     ++++v
  MMETSP1061-20121228|3182_1 110 LGFQKPTPVQRQIVPFLLRNPsaHVLALASTGSGKTAAFVLPILHKLALdpygiyAVVVSPTRELakqIHQQVLALGSsYNVESALVVGGMDPTKQSSV 208
                 68899999**********987557888999************876533222222479****99884445679999964168888877665555555555 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 3.4e-12
   TIGR00614 225 kgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallr 339
                 k +s i++  + +++  v+  L++ g++  a h+ l++++r     kf  ++++v+vat     G++ p v  v+  +lp++  sY   +GR  R g + +++ + + +Dval++
  MMETSP1061-20121228|3182_1 491 KARSTIVFVATCERAALVSGILTEVGVENVALHSLLSQNRRLAALAKFKSQQVRVLVATDIASRGLDVPSVDLVLQSELPRNPVSYVHRIGRTARAGRRGRAISLVSEQDVALVH 605
                 66789******************************************************9999***********************************************99765 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   6.1e-07   0.00021     263     335 ..     138     213 ..     106     249 .. 0.84
   2 !   23.8   0.1   1.1e-08   3.6e-06     487     560 ..     521     593 ..     503     607 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 6.1e-07
   TIGR00643 263 GdVGsGKTvVavlallavi...esGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeia 335
                    GsGKT   vl +l+ +     G  ++++ PT  LA+Q  +++  l + +++e al++g +   k++++le+ +
  MMETSP1061-20121228|3182_1 138 ASTGSGKTAAFVLPILHKLaldPYGIYAVVVSPTRELAKQIHQQVLALGSSYNVESALVVGGMDPTKQSSVLEHRK 213
                 567*****988888776551226899*****************************************999998754 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 1.1e-08
   TIGR00643 487 llhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksycl 560
                  lh+ l+++ + ++l++F++++v +LvaT +   G+dvP + +++  +  R  +s  H + GR +R  +++ ++
  MMETSP1061-20121228|3182_1 521 ALHSLLSQNRRLAALAKFKSQQVRVLVATDIASRGLDVPSVDLVLQSELPRNPVSYVHRI-GRTARAGRRGRAI 593
                 479*******************************************************98.9999988877665 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.048        16       5      55 ..     137     188 ..     133     212 .. 0.74
   2 !   22.3   0.0   3.9e-08   1.3e-05     221     329 ..     491     593 ..     484     621 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.048
   TIGR01587   5 eAPtGyGKteaallwalklikkqkadkvifal...Ptratanamyerlkelfgs 55 
                  A tG+GKt a +l  l++         i+a    Ptr +a  +++++ +l +s
  MMETSP1061-20121228|3182_1 137 LASTGSGKTAAFVLPILHK--LALDPYGIYAVvvsPTRELAKQIHQQVLALGSS 188
                 689******9988878773..445555555433349999999999999887666 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 3.9e-08
   TIGR01587 221 kekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDi.svdvlitelapid..sLiQRlGRlaRygrkirenrev 329
                 k+++ +++v t +rA  ++  l e + e   + lHs  +++ r       l+++k+++ +v+vaT ++  +lD+ svd+++    p +  s + R+GR aR gr+ r    +
  MMETSP1061-20121228|3182_1 491 KARSTIVFVATCERAALVSGILTEVGVE--NVALHSLLSQNRRLAA----LAKFKSQQVRVLVATDIASRGLDVpSVDLVLQSELPRNpvSYVHRIGRTARAGRRGR---AI 593
                 578899*****************99997..7789***999988776....***********************9899*9887777776447899*******999987...33 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.089        30      29      76 ..     131     184 ..     114     194 .. 0.68
   2 !   23.9   1.1     7e-09   2.4e-06     444     583 ..     493     629 ..     483     688 .. 0.71

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.089
   TIGR00631  29 ekeqvLlGvtGsGktftia.nviakvqk.P....tlvlahnktLaaqLyeelke 76 
                 ++++  l  tGsGkt++    +++k+   P    ++v+++ + La q+ +++ +
  MMETSP1061-20121228|3182_1 131 SAHVLALASTGSGKTAAFVlPILHKLALdPygiyAVVVSPTRELAKQIHQQVLA 184
                 456666899******886514555554322333389999999999999887655 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 7e-09
   TIGR00631 444 ervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarn.veGkvilyadkitesmekaiee.terrrkiqieyneehgitP 583
                   ++v + t   a  ++  l+e+g+    lhs +   +r+  + +++ +++ vlv  ++   GlD+P v lv      +  + r+  s +  iGr ar   +G++i    +   ++ +a ee t r  ++ +e   e+ i  
  MMETSP1061-20121228|3182_1 493 RSTIVFVATCERAALVSGILTEVGVENVALHSLLSQNRRLAALAKFKSQQVRVLVATDIASRGLDVPSVDLVL-----QSELPRNPVSYVHRIGRTARAgRRGRAISLVSEQDVALVHAAEElTGRPLEKCTEITDEDAIAL 629
                 456788888888999999*****************************************************95.....45699***************73579999777777666666666525565666666666666653 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0015      0.52      24      76 ..     130     184 ..     114     227 .. 0.83
   2 !   13.4   0.1   1.8e-05    0.0061     322     383 ..     525     586 ..     501     604 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0015
   TIGR04095  24 ngrGilkma.tGtGktlt.aLalvsklaekikslvvvvvvPykhLveqWakeaek 76 
                     +l++a tG+Gkt    L + +kla     +  vvv P ++L++q  +++ +
  MMETSP1061-20121228|3182_1 130 PSAHVLALAsTGSGKTAAfVLPILHKLALDPYGIYAVVVSPTRELAKQIHQQVLA 184
                 55567777659*****8736889999*999999***************9887654 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.8e-05
   TIGR04095 322 eeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRk 383
                   s+++R   l +f+s+++ +lva      G+DvP++   +      nP  ++ R GR  R 
  MMETSP1061-20121228|3182_1 525 LLSQNRRLAALAKFKSQQVRVLVATDIASRGLDVPSVDLVLQSELPRNPVSYVHRIGRTARA 586
                 5567889999**************************98655555569***********9886 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     4e-06    0.0014     689     771 ..     521     602 ..     511     628 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4e-06
   TIGR00580 689 iaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayayllvpsqkkl 771
                   H+ +++++    + +F+++++ vLv+T i   G+d+p++  ++  +  +  ++  + + GR  R  +++ a  lv +q+  
  MMETSP1061-20121228|3182_1 521 ALHSLLSQNRRLAALAKFKSQQVRVLVATDIASRGLDVPSVDLVLQSELPRNPVSYVHRI-GRTARAGRRGRAISLVSEQDVA 602
                 5799999999999*****************************999999999999999987.9999999999988877766543 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.8e-05     0.013      14      59 ..     131     182 ..     119     196 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.8e-05
   TIGR03158  14 advllntAptGaGKtlaalvevlsee.ldt.....ialyPtNaLiedqekai 59 
                 +  +l +A tG+GKt a  +++l++  ld      + + Pt +L+++ ++++
  MMETSP1061-20121228|3182_1 131 SAHVLALASTGSGKTAAFVLPILHKLaLDPygiyaVVVSPTRELAKQIHQQV 182
                 456789*****************9851444666667888******9988876 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.083        28       5      45 ..     139     182 ..     135     210 .. 0.79
   2 !    9.1   0.0   0.00026      0.09     293     337 ..     520     564 ..     501     567 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.083
   TIGR00595   5 vtGSGKtEvylkviekvlakgk...svlvLvPEiaLtaqllkrl 45 
                  tGSGKt  ++  i + la +     ++v+ P   L++q+ +++
  MMETSP1061-20121228|3182_1 139 STGSGKTAAFVLPILHKLALDPygiYAVVVSPTRELAKQIHQQV 182
                 59*********999999998651115677779999999998876 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00026
   TIGR00595 293 ldsDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlv 337
                 ++   + ++++  a l++f+++++++l+ t + ++Gld p+v lv
  MMETSP1061-20121228|3182_1 520 VALHSLLSQNRRLAALAKFKSQQVRVLVATDIASRGLDVPSVDLV 564
                 55555666777888999*************************997 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   7.8     0.035        12     788     848 ..     347     406 ..     268     427 .. 0.48

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.035
   TIGR00927 788 ekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieae 848
                 ++ + ++  e +ae +++d+++ + ++++ +++ ++++++ ++++   + G+ d++e +ae
  MMETSP1061-20121228|3182_1 347 NHRKRQKRDESPAESNDNDNDDNDNDDDN-DNDKDDDKDDDDKKDAVAECGASDNDEHDAE 406
                 11111111111122111111111111111.1111111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.75
# Mc/sec: 1219.58
//
Query:       MMETSP1061-20121228|3192_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 171.10
//
Query:       MMETSP1061-20121228|3189_1  [L=1077]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1077 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.12s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 3644.93
//
Query:       MMETSP1061-20121228|3193_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1884.80
//
Query:       MMETSP1061-20121228|3191_1  [L=845]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-284  943.7   0.0   1.3e-284  943.5   0.0    1.1  1  TIGR01815 TrpE-clade3: anthranilate synthase
    5.5e-78  260.8   0.0      8e-77  257.0   0.0    2.3  2  TIGR00564 trpE_most: anthranilate synthase component I
    2.2e-69  232.7   0.0    2.7e-69  232.4   0.0    1.1  1  TIGR01820 TrpE-arch: anthranilate synthase component I
    6.1e-64  214.5   0.0    1.2e-63  213.5   0.0    1.4  1  TIGR00565 trpE_proteo: anthranilate synthase component I
    5.9e-59  197.9   0.0    8.4e-59  197.4   0.0    1.2  1  TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I
    2.4e-54  182.6   0.0    1.1e-29  101.0   0.0    2.1  2  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
      3e-54  182.2   0.0    4.3e-54  181.7   0.0    1.2  1  TIGR00553 pabB: aminodeoxychorismate synthase, component I
    7.3e-39  131.3   0.0    1.1e-38  130.7   0.0    1.3  1  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    1.1e-31  108.2   0.0    1.5e-31  107.7   0.0    1.2  1  TIGR00543 isochor_syn: isochorismate synthase
    7.8e-30  101.8   0.0      1e-29  101.4   0.0    1.1  1  TIGR03494 salicyl_syn: salicylate synthase
    8.2e-20   68.8   0.0    1.4e-19   68.0   0.0    1.3  1  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    9.9e-15   52.2   0.0    1.8e-14   51.3   0.0    1.4  1  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    0.00015   19.5   0.0      0.062   10.9   0.0    2.6  3  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
     0.0059   13.1   0.1      0.051   10.0   0.0    2.1  2  TIGR00337 PyrG: CTP synthase


Domain annotation for each model (and alignments):
>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  943.5   0.0  4.3e-287  1.3e-284      17     711 ..     106     842 ..      75     845 .] 0.89

  Alignments for each domain:
  == domain 1    score: 943.5 bits;  conditional E-value: 4.3e-287
   TIGR01815  17 kletaleevvdalderrGallsssyeypGrykrwalgfvdppvalsasGrtlriealnerGevllpviaealkkved..........lakleeaarrvtasvkspd..evlaeeerskqpsvftvlravldlfa.seedellGlyGafgydlafqfeaieqklerpddqrdlvlylpdelvvvdyyaakaflveydfitaagstegleadgedepyrsdtsiepq...adhkpGeyaklvekakeafrrGdlfevvpgqkffeac..eaapsevferlkainpspyeffvnlGrgeylvgaspemfvrve..........GrrvetcpisGtikrGddaiddaaqilkllnskkdeaeltmctdvdrndksrvcepGsvkviGrrqielysrlihtvdhveGrlrdeldaldaflshawavtvtGapkraalqfiekteksprrwyGGavGrlgfnGdlntGltlrtirlkdgiaevraGatllydsdpeaeeaetelkaaalieai.rdakaadaakeesava....kvgeGkrillvdhedsfvhtlanylrqtGasvttlrhsva......eelldeerpdlvvlspGpGrpkdfdvketikaalardlpvfGvclGlqglveafGGeldvlaepvhGkasrirvlepd....vlfaglpeeltvGryhslfarsdrlpkelkvtaesedgvimaiehrklpvaavqfhpesiltlaGeaGlalienvvdklaks 711
                 + e  +e +v++ld+++G+ll+ssye+pGry rw+lgfvdpp++++ +G   +i+aln+rG++llp+i +a+k++++          ++++e    ++++++  p+   +++eeers+qps f+v+r+++dlf  +  d +lGlyGafgydl+f fe+i++k +r  +qrdlvlylpd + v+d  +  a+ v+y+f  ++ st+gl++ g ++++++ +  +++    d   Ge++k v+ ake f+ G+lfe v +q+f e+   e++ps +f+rl++ np+py+ff+nlG++eylvgaspemfvr e            rvetcpisGt++rG+da++da +++ l+  +k+e+eltmctdvdrndksr+cepGsv+viGrrqie+ysrlihtvdhveG lr+e+daldafl+h+wavtvtGapk +a+qf+e+ e+spr wyGGavG +gf+G lntGltlrt+r+kdgiae+raGatll ds+p++ee etelka+a+i+a+ r++ a da  +  +++    +vgeGk+i+l+dhedsfvhtl nylrqtGa+v tlr + +      + + + ++pd+vvlspGpG+p+df + ++i+  ++ d+p fGvclGlqg+ve fGG+l+vl +p+hGk+s + ++e +     +f+glp  + v ryhsl   +++lp+ lkvta ++dg++m+i+h  lp aavqfhpesilt     G+a+++n +   a +
  MMETSP1061-20121228|3191_1 106 SSEAVIEALVQKLDSQKGVLLTSSYEFPGRYARWSLGFVDPPLEVAGKGDKCTIKALNDRGKILLPAIEKAMKDMKQeeilsdinviVEEGESDMVQIDVTIVPPPpvGTFSEEERSRQPSLFSVVRKLVDLFGyTGGDGQLGLYGAFGYDLTFSFEPIDLKQDRDPEQRDLVLYLPDSVYVIDSDKRDAWHVQYEFNVDNKSTQGLPRVGLNDDFQAFDGEKTEfikRDTPEGEFSKSVDRAKEEFKVGNLFEAVLSQTFREKLtpENKPSTIFRRLRKRNPAPYGFFINLGEQEYLVGASPEMFVRCEsiqendyypgAMRVETCPISGTVARGADALEDALRVKSLMMNQKEESELTMCTDVDRNDKSRICEPGSVQVIGRRQIEMYSRLIHTVDHVEGYLRPEFDALDAFLCHTWAVTVTGAPKTWAIQFVEDMERSPRCWYGGAVGLVGFDGSLNTGLTLRTVRIKDGIAEIRAGATLLTDSEPKDEELETELKASAMIDAVvRRGGASDAVATDDETSeppvNVGEGKSIILIDHEDSFVHTLGNYLRQTGATVKTLRSGPSalatigKMVEEGNKPDMVVLSPGPGNPSDFGLSNSIELLIKNDIPTFGVCLGLQGMVEYFGGKLGVLGYPMHGKPSDVTLTEDGlgdnSIFTGLPTTFEVARYHSLHGIREELPETLKVTALTDDGIVMGIQHTSLPFAAVQFHPESILTSP-AHGMAILKNFIRLHAMK 842
                 44667999************************************************************999887654222222222123455566789999988762246***********************735689****************************************************************************998766555433489999*****************************9753389***************************************97343444444236**************************************************************************************************************************************************************************************985488888887776666542222688*********************************97541212214455668*******************************************************************986433358************************************************************965.67*******99876655 PP

>> TIGR00564  trpE_most: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.13        38       9      63 ..     114     168 ..     107     200 .. 0.70
   2 !  257.0   0.0   2.7e-79     8e-77      93     453 ..     248     611 ..     235     613 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.13
   TIGR00564   9 vylklakrkesfllEsvekeeelgRySliglnpvleikakdgkavlleaddeeak 63 
                 +++kl+++k  +l  s e   + +R+Sl  ++p le++ k++k ++   +d+ + 
  MMETSP1061-20121228|3191_1 114 LVQKLDSQKGVLLTSSYEFPGRYARWSLGFVDPPLEVAGKGDKCTIKALNDRGKI 168
                 678999866666666777888*******************996665555554433 PP

  == domain 2    score: 257.0 bits;  conditional E-value: 2.7e-79
   TIGR00564  93 gavGylgydtvrlveklkeeaedelelpdlllllvetvivfDhvekkvilienarteaersaeeeaaarleellaelqkelekavkaleekkesftsnvekeeyeekvakakeyikaGdifqvvlSqrleakve..akpfelYrkLRtvNPSpylyyldled.felvgsSPEllvkvk..........gkrvetrPiAGtrkRGatkeeDealeeeLladeKerAEHlmLvDLaRNDigkvaklgsvevkellkiekyshvmHivSeVeGelkdeltavDalraalPaGTlsGAPKvrAmelidelEkekRgiYgGavgylsfdgdvdtaiaiRtmvlkdgvayvqAgaGiVaDSdpeaEyeEtlnKakallra 453
                 g+ G++gyd+  ++e++  ++  + e  dl+l+l ++v v D  ++ +  ++++ + +++s++     r+      l+++ +    +  ek+e ++ ++ + e+ ++v++ake+ k G++f  vlSq ++ k++  +kp  ++r+LR+ NP+py ++++l +   lvg+SPE++v+ +            rvet Pi Gt+ RGa+  eD+   + L+ ++Ke  E +m  D+ RND ++++++gsv+v    +ie ys ++H v +VeG l++e++a+Da+     a T++GAPK+ A++ ++++E + R  YgGavg ++fdg+++t +++Rt+ +kdg+a + Aga +  DS+p++E  Et  Ka a+  a
  MMETSP1061-20121228|3191_1 248 GLYGAFGYDLTFSFEPIDLKQDRDPEQRDLVLYLPDSVYVIDSDKRDAWHVQYEFNVDNKSTQ--GLPRVG-----LNDDFQ---AFDGEKTEFIKRDTPEGEFSKSVDRAKEEFKVGNLFEAVLSQTFREKLTpeNKPSTIFRRLRKRNPAPYGFFINLGEqEYLVGASPEMFVRCEsiqendyypgAMRVETCPISGTVARGADALEDALRVKSLMMNQKEESELTMCTDVDRNDKSRICEPGSVQVIGRRQIEMYSRLIHTVDHVEGYLRPEFDALDAFLCHTWAVTVTGAPKTWAIQFVEDMERSPRCWYGGAVGLVGFDGSLNTGLTLRTVRIKDGIAEIRAGATLLTDSEPKDEELETELKASAMIDA 611
                 789******************888999**************************9888777533..333332.....222222...122333444556677899**************************999862267**********************883569**********988887777773345***********************************************************************************************************************************************************************************9876 PP

>> TIGR01820  TrpE-arch: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.4   0.0   9.4e-72   2.7e-69     100     448 ..     248     612 ..     160     613 .. 0.87

  Alignments for each domain:
  == domain 1    score: 232.4 bits;  conditional E-value: 9.4e-72
   TIGR01820 100 glvGyvaYdavrdywedaekekes..eipeaefllvtkvlvfdhleeevslvvteevsad.....eaekiveklkeaekeeeekkeaeleslaekeefeeavekakekifeGdifqvvlSrklelrl..dldplelYaklreiNPSPYmyllefgdr.aivGaSPEtlvrve..........krtveinPiAGtapRgkseeeDeelakelLsdeKerAEHvmLvDLaRNDvrkvsesgsvkvsefmkvlkyshvqHieSevvgtLkkeadafdalkAvfPAGtlsGaPKirAmeiieelEkepRgvYgGgvGyfslngdadlAiviRtaliekkklriqaGAGivaDSdPekEfeEterKmkavlkai 448
                 gl G   Yd    ++e ++ ++++  e  +++  l ++v+v d  ++    v+ e++ +d      ++++   l +  +  + +k+++++++  + ef ++v +ake+ + G++f +vlS++ + +l  + +p +++++lr+ NP+PY ++++ g++ ++vGaSPE++vr e            +ve+ Pi Gt+ Rg++  eD    k+l+ ++Ke  E +m  D+ RND  +++e+gsv+v +  +++ ys+  H + +v g L++e da+da+     A t++GaPK  A++ +e++E++pR  YgG+vG  + +g+ +  +++Rt+ i++  ++i+aGA +  DS+P+ E  Ete K++a+++a+
  MMETSP1061-20121228|3191_1 248 GLYGAFGYDLTF-SFEPIDLKQDRdpEQRDLVLYLPDSVYVIDSDKRDAWHVQYEFN-VDnkstqGLPRVG--LNDDFQAFDGEKTEFIKRDTPEGEFSKSVDRAKEEFKVGNLFEAVLSQTFREKLtpENKPSTIFRRLRKRNPAPYGFFINLGEQeYLVGASPEMFVRCEsiqendyypgAMRVETCPISGTVARGADALEDALRVKSLMMNQKEESELTMCTDVDRNDKSRICEPGSVQVIGRRQIEMYSRLIHTVDHVEGYLRPEFDALDAFLCHTWAVTVTGAPKTWAIQFVEDMERSPRCWYGGAVGLVGFDGSLNTGLTLRTVRIKDGIAEIRAGATLLTDSEPKDEELETELKASAMIDAV 612
                 678999999999.88888777555336666776676799****99999888887664.4423333555555..4555566666777777777779**************************98655511699**********************986379**********998889888887789********************999**************************************************************************************************************************************************************997 PP

>> TIGR00565  trpE_proteo: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.5   0.0   4.1e-66   1.2e-63       7     494 ..     113     613 ..     106     616 .. 0.83

  Alignments for each domain:
  == domain 1    score: 213.5 bits;  conditional E-value: 4.1e-66
   TIGR00565   7 alfeklcqdrpatlllesaeieskddlkslllvdaalkitclgdivtikalsnnGeallkkldaalkal............veavqsenalv..lrf..lkvkklldedakllsasvfdalrllkslkqkpkepealllgGlfsydlvanfedlpqlkakndnvpdfifylaenlividhkeksveikaalfaereekqvaiakldlkeaqkskkadfvpkvsaasreveanlsdeefegvvkalkkeikkGeifqvvpsrrfs..lecp.etlaayyqlkksnPsPymfylk.dedfilfGasPesalk........ydaesrqleiyPiaGtrprGkdadGnidrdldsrlelelrldhkeraehlmlvdlarndlarvcksgkryvaellkvdrysnvmhlvsrvvGelrkeldalhayracmnmGtlsGaPkikalqliyqlenqrrgsyGGavGyltseGdldtcivirsalvkngiavvqaGaGvvldsvPqseadetrakaravlkair 494
                 al +kl   +   ll  s e   +    sl +vd  l +  +gd+ tikal++ G+ ll  +++a+k              ve  +  +++   ++   ++   +  e+ +  ++s+f  +r l +l   +  +  l l G f ydl  +fe+++  + ++ +  d ++yl +++ vid  ++++      f+ +++       + l +     + df      +++ ++ ++ + ef++ v   k+e k+G++f +v+s+ f   l+   ++ + + +l+k nP+Py f+++  e   l GasPe  ++        y + + ++e  Pi+Gt  rG da   ++  l  +    l ++ ke++e  m  d+ rnd +r+c++g+ +v    +++ ys ++h v  v G lr+e dal a+ +   + t++GaPk  a+q++ ++e   r  yGGavG +  +G+l+t +++r++ +k+gia ++aGa  + ds+P+ e  et  ka a+++a+ 
  MMETSP1061-20121228|3191_1 113 ALVQKLDS-QKGVLLTSSYEFPGRYARWSLGFVDPPLEVAGKGDKCTIKALNDRGKILLPAIEKAMKDMkqeeilsdinviVEEGE-SDMVQidVTIvpPPPVGTFSEEERSRQPSLFSVVRKLVDLFGYTGGDGQLGLYGAFGYDLTFSFEPIDLKQDRDPEQRDLVLYLPDSVYVIDSDKRDAWHVQYEFNVDNKS-----TQGLPRVG--LNDDFQAFDGEKTEFIKRDTPEGEFSKSVDRAKEEFKVGNLFEAVLSQTFRekLTPEnKPSTIFRRLRKRNPAPYGFFINlGEQEYLVGASPEMFVRcesiqendYYPGAMRVETCPISGTVARGADA---LEDALRVK---SLMMNQKEESELTMCTDVDRNDKSRICEPGSVQVIGRRQIEMYSRLIHTVDHVEGYLRPEFDALDAFLCHTWAVTVTGAPKTWAIQFVEDMERSPRCWYGGAVGLVGFDGSLNTGLTLRTVRIKDGIAEIRAGATLLTDSEPKDEELETELKASAMIDAVV 613
                 66666665.6677888999********************************************99987744444343332211111.1222211222112334578899999**********9999*999999999*******************9999999********************9987766666653222.....23333333..3444555555666778899999****************************7223333145667999*************95466789*****976652222233366777899************997...45555444...688999*********************************************************************************************************************************************************85 PP

>> TIGR01824  PabB-clade2: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.4   0.0   2.9e-61   8.4e-59       3     354 ..     249     607 ..     247     608 .. 0.88

  Alignments for each domain:
  == domain 1    score: 197.4 bits;  conditional E-value: 2.9e-61
   TIGR01824   3 llgllaydvareleaildlkteekglpvlallryeaavaldeeeqivavaeaeaekegafataadalaavaaatslaspdvgplaadlealidraayetavkrikdyikaGdvfQaNlsrrltariaaevdplalfealraanpapyailleepgvd.vvsaSPElllkre..........grevqtrPIaGTrargadlaeDealaaeLlaadKdrAEhvmivDLeRNDLgrvcetGtvevpellavesyaevlHlvSrVtgrLregleladlleAvFPggsiTGaPKvraleiIeelEptrRgpytGsvgvidadGdadlnilIRTleaaearlelrvGaGivadSdpegEydEteaKara 354
                 l g + yd++ + e+i  ++ ++ +  +l l+ ++ + ++d  ++ ++  + e + ++  +++  ++ + ++ +    ++ + ++ d    +++ ++ ++v r+k+  k G++f a ls+ +  +++ e +p ++f +lr++npapy  +++   ++ +v aSPE++++ e          +  v+t PI GT argad  eD+ +++ L+ ++K+  E  m  D+ RND +r+ce G+v+v   +++e y+ ++H v +V+g Lr+++++ d++     + ++TGaPK+ a++ +e++E  +R  y G+vg +++dG ++  +++RT+   ++  e+r+Ga + +dS+p++E  Ete Ka a
  MMETSP1061-20121228|3191_1 249 LYGAFGYDLTFSFEPIDLKQDRDPEQRDLVLYLPDSVYVIDSDKRDAWHVQYEFNVDNKSTQGLPRVGLNDDFQAFDGEKTEFIKRD----TPEGEFSKSVDRAKEEFKVGNLFEAVLSQTFREKLTPENKPSTIFRRLRKRNPAPYGFFINLGEQEyLVGASPEMFVRCEsiqendyypgAMRVETCPISGTVARGADALEDALRVKSLMMNQKEESELTMCTDVDRNDKSRICEPGSVQVIGRRQIEMYSRLIHTVDHVEGYLRPEFDALDAFLCHTWAVTVTGAPKTWAIQFVEDMERSPRCWYGGAVGLVGFDGSLNTGLTLRTVRIKDGIAEIRAGATLLTDSEPKDEELETELKASA 607
                 567888999999998887777888888888888888888888866666666666666556665666666666666666655555533....57789*****************************************************9998765549*********9764444444443458********************************************************************************************************************************************************************************987 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   1.2e-25   3.5e-23     457     738 ..     325     609 ..     286     613 .. 0.83
   2 !  101.0   0.0   3.9e-32   1.1e-29       6     206 ..     639     841 ..     635     845 .] 0.82

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 1.2e-25
   TIGR01823 457 dkeeidlvikfPkkedyakavkaCqeeleaGdsyelCLtdetlvvlpaevsqdwelykrlrklnPaafsgfvrlkhvk.llsssPekflevdr...ds......rlklkPikGtvkkeedmslekarki...LksekelgenlmilDLirnDLyelvkkgdvrveellsveeharvyqlvsvvkakvessaskktrysgldvLkkslPPGsmtGaPkkrsvrlLedvedrkrGiysGvlGyldvtgsgefsvlirsafkykdedlWriGaGGavtvLstpeGeyeemltklesvl 738
                 d e+ +++ +   + +++k+v + +ee++ G+ +e  L ++    l++e + +  +++rlrk+nPa++  f++l++   l+ +sPe f+  +    ++      r++  Pi Gtv ++ d +le+a ++   + ++ke +e+ m  D+ rnD   +++ g+v+v    ++e ++r    v +v +             +ld++       ++tGaPk  +++++ed+e   r  y G +G    +gs +    +r++    ++ +  i aG  + + s p+ e  e  +k+ +++
  MMETSP1061-20121228|3191_1 325 DGEKTEFIKRDTPEGEFSKSVDRAKEEFKVGNLFEAVLSQTFREKLTPENK-PSTIFRRLRKRNPAPYGFFINLGEQEyLVGASPEMFVRCESiqeNDyypgamRVETCPISGTVARGAD-ALEDALRVkslMMNQKEESELTMCTDVDRNDKSRICEPGSVQVIGRRQIEMYSRLIHTVDHVEGYLRPEF------DALDAFLCHTWAVTVTGAPKTWAIQFVEDMERSPRCWYGGAVGLVGFDGSLNTGLTLRTVRI--KDGIAEIRAGATLLTDSEPKDEELETELKASAMI 609
                 45666777766667789*********************9877777777766.699*******************998757899*****987642212123333378889********998.6888755323289*************************************************99876554......59999777777889********************************************9754..3446678888777777777776666666666655 PP

  == domain 2    score: 101.0 bits;  conditional E-value: 3.9e-32
   TIGR01823   6 lnvLfiDayDsftynvvallekaldvrvsvitvhsDkld....ddllellqlfdaivvGPGPGdPnvakdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGqvsevkts.....daaifegvss.vkstryhsLy.ankesidsllalilledeedqilmsvkakkkPifGvqyhPesvkseke.svkllknflklali 206
                 + +++iD  Dsf + + + l ++      v t+ s        ++++e+ ++ d +v+ PGPG+P    d g+ + +  l   + +P +G+CLG+q ++ + G +++ l +p+hG+ s+v+++     d+ if g+   +++ ryhsL+ +++e +++l +  l++d    i+m ++++  P+  vq+hPes+ ++    + +lknf+ l  +
  MMETSP1061-20121228|3191_1 639 KSIILIDHEDSFVHTLGNYLRQTGAT---VKTLRSGPSAlatiGKMVEEGNKPDMVVLSPGPGNP---SDFGLSNSIELLI-KNDIPTFGVCLGLQGMVEYFGGKLGVLGYPMHGKPSDVTLTedglgDNSIFTGLPTtFEVARYHSLHgIREELPETLKVTALTDD---GIVMGIQHTSLPFAAVQFHPESILTSPAhGMAILKNFIRLHAM 841
                 5799**************99987665...666666544444689*********************...8888877775555.677***********************************9872222256788888657**********456677788655555544...59********************987766599*******99765 PP

>> TIGR00553  pabB: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.7   0.0   1.5e-56   4.3e-54       3     327 ..     251     606 ..     249     608 .. 0.86

  Alignments for each domain:
  == domain 1    score: 181.7 bits;  conditional E-value: 1.5e-56
   TIGR00553   3 GylsYeag................ddaalepklaalladhrtrtkll..rllvferveaeeaeaveaeseaaaeeqallseieveitraeyaeaikkvqeelkaGdvYqanltqqleatl..dgdplalyrklrkeqpapfsaflelgek.avlslSpElFlsvd.........gs.eletkPiKGTlprgadpeeDraqasaLaeseKdraEnlmivDLlRnDlgRiaevgsvkvdelfevetyptvhqlvstvkarlreeltlsdllralFPggSiTGaPKlrameiikelEkqrRgvYcGaiGllspegeldlnvaIRTlelsggeavlgvGggivadSdaeaEfeEvllKak 327
                 G ++Y++                  d +l   + ++++d  +r      + +  ++++++    v  +++ +a + + ++ i+ ++ + e+ +++++ +ee k G+ ++a l+q ++ +l  +++p +++r+lrk++pap++ f++lge+  ++  SpE+F++++         g  ++et Pi GT++rgad+ eD+  ++ L  ++K+ +E  m +D  RnD +Ri+e+gsv+v    ++e y+ + + v +v++ lr+e ++ d++     +  +TGaPK +a + ++++E+++R  Y Ga+Gl+ + g+l++ +++RT+++++g a + +G+ +  dS++++E  E+ lKa 
  MMETSP1061-20121228|3191_1 251 GAFGYDLTfsfepidlkqdrdpeqRDLVLYLPDSVYVIDSDKRDAWHvqYEFNVDNKSTQGLPRVGLNDDFQAFDGEKTEFIKRDTPEGEFSKSVDRAKEEFKVGNLFEAVLSQTFREKLtpENKPSTIFRRLRKRNPAPYGFFINLGEQeYLVGASPEMFVRCEsiqendyypGAmRVETCPISGTVARGADALEDALRVKSLMMNQKEESELTMCTDVDRNDKSRICEPGSVQVIGRRQIEMYSRLIHTVDHVEGYLRPEFDALDAFLCHTWAVTVTGAPKTWAIQFVEDMERSPRCWYGGAVGLVGFDGSLNTGLTLRTVRIKDGIAEIRAGATLLTDSEPKDEELETELKAS 606
                 55666666666666666666666566777777777777766555544004455556666677888888888888889999999999**************************9999876622689*********************986516889*******99733333333323479******************************************************************************************************************************************************************************997 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   0.0   3.9e-41   1.1e-38       2     191 ..     641     837 ..     640     838 .. 0.88

  Alignments for each domain:
  == domain 1    score: 130.7 bits;  conditional E-value: 3.9e-41
   TIGR00566   2 vllidnydsftynlvqlleelgaevvvkrndsltlqeieallplls....ivisPGPctPdeaaissleliehlaGklPilGvClGhqalaqafGadvvraekvkhGkvseiehngaa.....vfaglfnPdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPesilse..lGkellanflk 191
                 ++lid  dsf + l ++l + ga+v   r  +  l+ i +++ + +    +v+sPGP++P + ++s  ++   +   +P +GvClG q +   fG+++  +   +hGk s++++ + +     +f+gl  P +++++ryhsl+   e+l+++l+vtal++    +m+i+h  lp+  vqfhPesil++  +G ++l+nf++
  MMETSP1061-20121228|3191_1 641 IILIDHEDSFVHTLGNYLRQTGATVKTLRSGPSALATIGKMVEEGNkpdmVVLSPGPGNPSDFGLS-NSIELLIKNDIPTFGVCLGLQGMVEYFGGKLGVLGYPMHGKPSDVTLTEDGlgdnsIFTGL--PTTFEVARYHSLHGIREELPETLKVTALTDDG-IVMGIQHTSLPFAAVQFHPESILTSpaHGMAILKNFIR 837
                 89************************************99987655557799*************9.4444456778***********************************9876551111155555..889***************************99.9**********************97447999*****97 PP

>> TIGR00543  isochor_syn: isochorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.0   5.2e-34   1.5e-31      77     348 ..     329     611 ..     272     612 .. 0.87

  Alignments for each domain:
  == domain 1    score: 107.7 bits;  conditional E-value: 5.2e-34
   TIGR00543  77 tekakkeeidkeawaeaveealeeirqgkleKvVLarelelklaedievaavleelrqqnkdaylFlleepkggvflGatPErLlsrek..........eeleteALAGtvkrsadkeedaklgekllkdeKnlrEhqlVvekirreLekice..slevsekpellklakvqHLytkikarlkkeksllkllkqLhPTPAvgGlPreeAlelireiEtfdRglYaapiGwldkegngefiVaiRSalvedeqvrlyAGaGivadSdpesEweEvelKlatllra 348
                 te +k  ++ + ++++ v  a ee++ g+l   VL+++ + kl  + +++ ++++lr++n++ y F+++ ++++ ++Ga+PE  ++ e            ++et ++ Gtv+r+ad+ eda   + l+ ++K++ E  +  +  r++   ice  s++v  + ++ + +++ H   ++++ l +e ++l+          v G P+  A ++++++E   R +Y++ +G+++ +g+ +   ++R   ++d+ + + AGa ++ dS+p++E  E+elK++++++a
  MMETSP1061-20121228|3191_1 329 TEFIK-RDTPEGEFSKSVDRAKEEFKVGNLFEAVLSQTFREKLTPENKPSTIFRRLRKRNPAPYGFFINLGEQEYLVGASPEMFVRCESiqendyypgaMRVETCPISGTVARGADALEDALRVKSLMMNQKEESELTMCTDVDRNDKSRICEpgSVQVIGRRQIEMYSRLIHTVDHVEGYLRPEFDALDAFLCHTWAVTVTGAPKTWAIQFVEDMERSPRCWYGGAVGLVGFDGSLNTGLTLRTVRIKDGIAEIRAGATLLTDSEPKDEELETELKASAMIDA 611
                 44444.5667789***********************************************************************997742222222222579**************************************************8667999999*********************9955555433323344578************************************************99*****************************986 PP

>> TIGR03494  salicyl_syn: salicylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.4   0.0   3.5e-32     1e-29     145     423 ..     322     612 ..     211     614 .. 0.81

  Alignments for each domain:
  == domain 1    score: 101.4 bits;  conditional E-value: 3.5e-32
   TIGR03494 145 qiepleqasavdtetdaseykervaaavaeiaagkYkkvilsRave..lpaavDlpat.lllgRrkntPvRsfllrlgekea.lGfsPelvl...svradg......kvvtePLaGtRaleegpeeakklkeeLlsdskeivehvisvkeaieeleevcepgtvvvedlmtvreRGsvqhLgstvsgqLaedkdawdafevLfPaitasGiPkaaaieailrleetpReLYsGavllieadetldaaLvLRavyqksektwlqaGaGiiaqstPeReleetceklasiapyl 423
                 q  + e+++ +  +t + e+ + v++a +e + g+    +ls + +  l+ +   p+t ++  R++n     f+++lge+e  +G sPe+ +   s+++++      +v t P++Gt a+++++ e++   + L+ + ke  e  +      ++ +++cepg+v v    ++       h    v g L ++ da+daf     a+t +G Pk+ ai+ +  +e++pR  Y Gav l+  d+ l++ L+LR+v  k++ + ++aGa ++ +s+P+ e  et  k +++++ +
  MMETSP1061-20121228|3191_1 322 QAFDGEKTEFIKRDTPEGEFSKSVDRAKEEFKVGNLFEAVLSQTFRekLTPEN-KPSTiFRRLRKRNPAPYGFFINLGEQEYlVGASPEMFVrceSIQENDyypgamRVETCPISGTVARGADALEDALRVKSLMMNQKEESELTMCTDVDRNDKSRICEPGSVQVIGRRQIEMYSRLIHTVDHVEGYLRPEFDALDAFLCHTWAVTVTGAPKTWAIQFVEDMERSPRCWYGGAVGLVGFDGSLNTGLTLRTVRIKDGIAEIRAGATLLTDSEPKDEELETELKASAMIDAV 612
                 444455667788899999*****************999999998751144444.455515666666666689******998537*****987232455443333344799******************************************************************************************************************************************************************************99998866 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   0.0   4.9e-22   1.4e-19       2     182 ..     642     837 ..     641     842 .. 0.77

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 4.9e-22
   TIGR00888   2 lvldfgsqYaqliaRrlrelgvyselvpa.tttleeike.....vepkgiilsGgPesvkaenaekvdekifelgvPvlGiCyGmqllakalGgeveraekreygk.aelevld....edelfkglekelkvWmshg..DkvkelPegfkvlaksencpvaalkkeekklyGvqfhPevtht..ekGkellenfvk 182
                 +++d +  +++ +   lr++g + + +    ++l  i +      +p  ++ls gP    + + ++  e +++ ++P +G+C+G+q +++++Gg+ +      +gk  ++++++    ++++f+gl+++++v   h      +elPe  kv+a ++   v  +++++ ++  vqfhPe   t   +G+++l+nf++
  MMETSP1061-20121228|3191_1 642 ILIDHEDSFVHTLGNYLRQTGATVKTLRSgPSALATIGKmveegNKPDMVVLSPGPGNPSDFGLSNSIELLIKNDIPTFGVCLGLQGMVEYFGGKLGVLGYPMHGKpSDVTLTEdglgDNSIFTGLPTTFEVARYHSlhGIREELPETLKVTALTDDGIVMGIQHTSLPFAAVQFHPESILTspAHGMAILKNFIR 837
                 5566666666666666666666665543312333333331112357899***********************************************9999998887356777762222579*******9999777752145679**********************************76662269********97 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   6.1e-17   1.8e-14     215     357 ..     686     837 ..     579     841 .. 0.72

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 6.1e-17
   TIGR01368 215 lnpdgillsnGPGdPaaveeaietvkklleakiPifGIclGhqllalalgaktyklkfGhrGaNhpvkdlktg...rveitsqNHgyavdees........lkeeelevthvnlnDgtveglehkelpvfsvQyHPeas.pGphdteylFdefve 357
                  +pd ++ls GPG+P++     + ++ l++++iP+fG+clG q +   +g+k   l +  +G+   v+ +++g   +  +t     + v +          l+ e+l+vt     Dg v g++h++lp+ +vQ+HPe+  + p     + ++f++
  MMETSP1061-20121228|3191_1 686 NKPDMVVLSPGPGNPSDFG-LSNSIELLIKNDIPTFGVCLGLQGMVEYFGGKLGVLGYPMHGKPSDVTLTEDGlgdNSIFTGLPTTFEVARYHslhgireeLP-ETLKVTAL-TDDGIVMGIQHTSLPFAAVQFHPESIlTSPAHGMAILKNFIR 837
                 468*************995.7899****************************************999876654222667788888888876443344221122.33454443.478999******************953667777777777776 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       3.5     1e+03      24      37 ..     190     203 ..     160     221 .. 0.46
   2 !    5.6   0.0    0.0092       2.7      64      86 ..     709     731 ..     680     744 .. 0.86
   3 !   10.9   0.0   0.00021     0.062     170     197 ..     807     837 ..     756     838 .. 0.68

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 3.5
   TIGR01855  24 esevvkdskeleka 37 
                 ++ v + ++++ ++
  MMETSP1061-20121228|3191_1 190 NVIVEEGESDMVQI 203
                 12222333344444 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0092
   TIGR01855  64 aekvvkkkkpvlgiClGmQllfe 86 
                 +e + k++ p+ g+ClG+Q ++e
  MMETSP1061-20121228|3191_1 709 IELLIKNDIPTFGVCLGLQGMVE 731
                 467789999**********8876 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00021
   TIGR01855 170 ekdnivgvQFHPE...kSgktGlkllknfle 197
                 ++  +++vQFHPE    S + G+++lknf++
  MMETSP1061-20121228|3191_1 807 TSLPFAAVQFHPEsilTSPAHGMAILKNFIR 837
                 4445789******555599**********97 PP

>> TIGR00337  PyrG: CTP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00017     0.051     344     389 ..     687     731 ..     633     741 .. 0.83
   2 ?    0.3   0.0      0.15        44     477     525 ..     790     837 ..     774     838 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00017
   TIGR00337 344 evdgilvPGGfGerGveGkilaikyarenkiPflGiclGlqvavie 389
                 + d +++  G G+    G  ++i+   +n+iP +G+clGlq +v e
  MMETSP1061-20121228|3191_1 687 KPDMVVLSPGPGNPSDFGLSNSIELLIKNDIPTFGVCLGLQGMV-E 731
                 46777777788888888999999999***************765.3 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.15
   TIGR00337 477 livsgksedgklveiielkdhpffvatqfhPefk.srveepsklflglvk 525
                 l+v++  +dg ++ i        f a+qfhPe   + + ++  +++++++
  MMETSP1061-20121228|3191_1 790 LKVTALTDDGIVMGIQ-HTSL-PFAAVQFHPESIlTSPAHGMAILKNFIR 837
                 6666666665544443.2233.389******9642667777778877775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.61u 0.22s 00:00:00.83 Elapsed: 00:00:00.79
# Mc/sec: 1411.78
//
Query:       MMETSP1061-20121228|3196_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1061-20121228|3195_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.54
# Mc/sec: 1278.34
//
Query:       MMETSP1061-20121228|3198_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1061-20121228|3200_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.52
# Mc/sec: 220.83
//
Query:       MMETSP1061-20121228|3203_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.35
# Mc/sec: 478.93
//
Query:       MMETSP1061-20121228|3201_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-05   20.9   4.3     0.0001   19.5   1.2    2.4  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    8.2e-05   19.2   0.1    0.00015   18.4   0.1    1.4  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    0.00013   18.7   0.4    0.00018   18.2   0.3    1.1  1  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0012   15.6   0.1     0.0018   15.0   0.1    1.1  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
     0.0012   15.4   1.9     0.0015   15.1   0.6    1.6  2  TIGR02734 crtI_fam: phytoene desaturase
     0.0064   12.9   0.2     0.0097   12.3   0.1    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0069   13.3   0.4     0.0096   12.8   0.3    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0098   11.1   0.0      0.014   10.6   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
  ------ inclusion threshold ------
       0.01   12.2   0.1      0.016   11.6   0.1    1.2  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.023   10.2   0.1      0.034    9.7   0.0    1.2  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
      0.031   10.9   0.3      0.045   10.4   0.2    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.032   10.4   0.0      0.042   10.0   0.0    1.1  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
      0.086    9.6   0.3       0.13    9.0   0.2    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   1.2   3.3e-07    0.0001       1      37 [.      49      86 ..      49      98 .. 0.90
   2 ?   -3.5   0.0       3.3     1e+03     239     267 ..     248     276 ..     220     287 .. 0.61
   3 ?    1.2   0.0      0.12        39     399     426 ..     457     484 ..     373     488 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.3e-07
   TIGR03467  1 vvvvGgGlAGLaAAveLaraGvr.vtllEarrqlGGRa 37
                v++ G+G+AG+ AA +L r G++   +lEa+ ++GGR 
  MMETSP1061-20121228|3201_1 49 VAILGAGVAGIYAANALERMGINnYVVLEASDRIGGRL 86
                89*******************8625789*********6 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 3.3
   TIGR03467 239 ggiralveaaeetlaadavvlAvpperaa 267
                   +++++  + e++ a++v++ +p ++++
  MMETSP1061-20121228|3201_1 248 SIVTLQIAGGPERVVASRVICTIPLAVLK 276
                 33344444444557788888888776655 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.12
   TIGR03467 399 lfLAGDwtatgyPATlEgAvrSGvqAAe 426
                 l  AG+ t+  +P+ + gA+  G +AA 
  MMETSP1061-20121228|3201_1 457 LLFAGEHTSVKFPSLVPGAAVEGLRAAI 484
                 778******************9*99985 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   4.6e-07   0.00015       5      46 ..      49      90 ..      45     109 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.6e-07
   TIGR00562  5 vvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy.Tr 46
                v+++G+G++G+ +a ale+     + v++Ea+dR+GG+++ Tr
  MMETSP1061-20121228|3201_1 49 VAILGAGVAGIYAANALERM-GINNYVVLEASDRIGGRLKdTR 90
                99****************99.5668999*********987555 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.3   5.7e-07   0.00018       2      38 ..      49      85 ..      48     113 .. 0.93

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 5.7e-07
   TIGR01813  2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGGN 38
                v ++G+G+AG+ aa+++++ g+++ vvle  + iGG 
  MMETSP1061-20121228|3201_1 49 VAILGAGVAGIYAANALERMGINNYVVLEASDRIGGR 85
                889********************************95 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   5.6e-06    0.0018     146     183 ..      49      87 ..      41      93 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.6e-06
   TIGR01317 146 vavvGsGPaGlaaadqlnraGh.tvtvferedrvGGllr 183
                 va++G+G aG+ aa+ l+r G  +  v e +dr+GG l+
  MMETSP1061-20121228|3201_1  49 VAILGAGVAGIYAANALERMGInNYVVLEASDRIGGRLK 87 
                 9********************6257899********875 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.6   4.9e-06    0.0015       2      37 ..      50      86 ..      49      91 .. 0.87
   2 ?   -2.6   0.0       1.1   3.4e+02      74      94 ..     307     327 ..     304     334 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.9e-06
   TIGR02734  2 vViGaGlgGLAlAirLaaaGiev.tvlekrdkpGGRa 37
                 ++GaG++G+ +A  L++ Gi+   vle+ d++GGR 
  MMETSP1061-20121228|3201_1 50 AILGAGVAGIYAANALERMGINNyVVLEASDRIGGRL 86
                689******************862678*********6 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.1
   TIGR02734  74 eveLvpldPaYrlffedgkal 94 
                 +++ vp+ P+Yr+ fe ++++
  MMETSP1061-20121228|3201_1 307 AIDRVPMPPGYRILFEVSSKF 327
                 5677899********988776 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   3.1e-05    0.0097     143     181 ..      48      87 ..      40     103 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.1e-05
   TIGR01318 143 rvaviGaGpaGlacadvlaraGvkv.vvfdrypeiGGllt 181
                  va++GaG aG+  a+ l r G++  vv +  ++iGG l+
  MMETSP1061-20121228|3201_1  48 PVAILGAGVAGIYAANALERMGINNyVVLEASDRIGGRLK 87 
                 59********************9752789999****9885 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.3     3e-05    0.0096       2      31 ..      49      79 ..      48      98 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3e-05
   TIGR03197  2 vavIGaGiAgaalalsLarrGvqvtl.lekd 31
                va++GaG+Ag+ +a++L r G++  + le++
  MMETSP1061-20121228|3201_1 49 VAILGAGVAGIYAANALERMGINNYVvLEAS 79
                8********************9865414544 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   4.4e-05     0.014     531     577 ..      40      87 ..      31      97 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.4e-05
   TIGR03315 531 pqlksekhkvaviGaGPaGlsagyflaraGlp.vtvfekkekagGvvk 577
                  q + +  +va++GaG aG+ a+  l r G++   v+e ++++gG +k
  MMETSP1061-20121228|3201_1  40 EQRSPDVLPVAILGAGVAGIYAANALERMGINnYVVLEASDRIGGRLK 87 
                 556667789*********************972578999**9999876 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   4.9e-05     0.016     209     255 ..      43      92 ..      29     103 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.9e-05
   TIGR03140 209 ekekydvlvvGgGPagaaaaiyaarkGlkvalv...aeriGGqvkdtvgi 255
                 + +   v ++G+G ag  aa    r G++  +v   ++riGG+ kdt g+
  MMETSP1061-20121228|3201_1  43 SPDVLPVAILGAGVAGIYAANALERMGINNYVVleaSDRIGGRLKDTRGV 92 
                 445566889********************999855568*********987 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00011     0.034     171     214 ..      49      93 ..      26     107 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00011
   TIGR01372 171 vLvvGaGpaGLaaAraAaraGar.vilvdeqaeaGGsllseaeti 214
                 v ++GaG aG+ aA a  r G++  ++++ + ++GG+l+++++ +
  MMETSP1061-20121228|3201_1  49 VAILGAGVAGIYAANALERMGINnYVVLEASDRIGGRLKDTRGVV 93 
                 4599*****************96357789999*******998765 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.2   0.00014     0.045       1      38 [.      49      87 ..      49      92 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00014
   TIGR00275  1 viiiGgGaaGlmaAitaae.egakVlllEknkkigkKll 38
                v+i+G+G aG++aA ++++   ++ ++lE++++ig  l+
  MMETSP1061-20121228|3201_1 49 VAILGAGVAGIYAANALERmGINNYVVLEASDRIGGRLK 87
                78*****************77789999*******98776 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00013     0.042     140     173 ..      46      79 ..      14     117 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00013
   TIGR02374 140 tkkaaviGgGLLGLeaaraLknlGldvsvielap 173
                 +   a++G+G+ G+ aa+aL+++G++  v+  a+
  MMETSP1061-20121228|3201_1  46 VLPVAILGAGVAGIYAANALERMGINNYVVLEAS 79 
                 445599********************99986554 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00041      0.13       5      42 ..      50      88 ..      47     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00041
   TIGR00031  5 iivGaGlsGivlaeilakln.krvlvvekrnhiGGncyd 42
                 i+GaG++Gi  a+ l++++ ++ +v+e  ++iGG   d
  MMETSP1061-20121228|3201_1 50 AILGAGVAGIYAANALERMGiNNYVVLEASDRIGGRLKD 88
                59****************994567889********8665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.36u 0.19s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|3199_1  [L=994]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       493  (0.120185); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.15s 00:00:00.82 Elapsed: 00:00:00.59
# Mc/sec: 2223.68
//
Query:       MMETSP1061-20121228|3206_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1636.66
//
Query:       MMETSP1061-20121228|3211_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 1099.91
//
Query:       MMETSP1061-20121228|3218_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00077   16.2   0.0     0.0012   15.7   0.0    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.8e-07    0.0012       3      64 ..     183     245 ..     181     256 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.8e-07
   TIGR03466   3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnlee.ldvEiveGdlkdeaslkkalkG 64 
                 v + Ga G  G + ++  le+G+++++lv ++ + +++++  +  +v+G+l++ +++++ +  
  MMETSP1061-20121228|3218_1 183 VAIFGAHGVTGHHFLQRALEAGYKIKALVSPGMPMNDVTGsQNLRLVTGSLEEIEKIREVVFN 245
                 6688*********************************997257899*******9999987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2276.81
//
Query:       MMETSP1061-20121228|3217_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1503.73
//
Query:       MMETSP1061-20121228|3214_1  [L=780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    9.2  10.9      0.013   12.4   0.2    2.6  3  TIGR00155 pqiA_fam: integral membrane protein, PqiA family


Domain annotation for each model (and alignments):
>> TIGR00155  pqiA_fam: integral membrane protein, PqiA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.2   3.1e-06     0.013     103     164 ..     227     288 ..     222     350 .. 0.76
   2 ?   -3.5   0.1      0.22     9e+02     376     395 ..     386     405 ..     380     410 .. 0.74
   3 ?    3.4   0.7    0.0017       7.1      96     155 ..     590     651 ..     566     669 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.1e-06
   TIGR00155 103 gtlvllcvvvvPiilvllilllvlakelqvklrevllvlerlkeWvmldiylvgvgvaivkv 164
                 ++l++++  + P + ++++ l ++    +++  + l+ l  l +W ++d+ +v v v ++ +
  MMETSP1061-20121228|3214_1 227 AVLLIVFSGIWPHLKLVMLNLTWFFGSHKIRRTKTLAWLSGLGKWSLADVLVVCVMVGVLNL 288
                 44555566666777777777777777777777777777777777777777777777766654 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.22
   TIGR00155 376 pgalyfgaaviltllsaetl 395
                  g +yf  avil ++ +  +
  MMETSP1061-20121228|3214_1 386 TGIYYFCGAVILSIFLSLVI 405
                 46789999999999866555 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.0017
   TIGR00155  96 kegyaitgtlvllcvvvvPiilvllilllvl.akelqvklrevll.vlerlkeWvmldiylv 155
                   +y  +gt+ l+cvv+  +  vll   +vl + +++v    v++ +l+ + +W ++ i  +
  MMETSP1061-20121228|3214_1 590 GMDYMLMGTFGLFCVVGPVVRAVLLFFTIVLdQCRISVDNLAVMVnFLGSFCAWEVFAIATI 651
                 56889999999999986444333333333331345666655666557777777776665433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.44
# Mc/sec: 2339.81
//
Query:       MMETSP1061-20121228|3216_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-10   39.4   0.0    1.3e-10   39.0   0.0    1.1  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family


Domain annotation for each model (and alignments):
>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   3.3e-14   1.3e-10       3     218 ..      18     247 ..      16     253 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 3.3e-14
   TIGR03649   3 LllgGtGkvasriarllaaasvpllvasrssss...aaledekavkFdwldedtyenvfssddemekeelisavylva.ppvldlasllikFidvavkk..gvkrfvllsasaiekGgpalgkvhaylkel.........eeveyavLRptWfmenfeeelhveaikeenklysAtsdgkiPfvsaeDiArvAvkaLtdksaknteylvlGpeLltYddvAeiLsevlgRk 218
                 L+l  tG+ +s ++  l a++ ++  +sr+ +s   + +++ + v+ d+ ++ +  +++ +++ ++   +    y ++ p   ++a+l  + +d + ++  +vk++v+ s++ ++   +++ + +  ++            +++++vLRp  fmen++++ + + +k+ +  +    +  + ++s  Di +  ++ L++ +    + +   +  +t  ++AeiLsev g k
  MMETSP1061-20121228|3216_1  18 LILSATGRQGSAVVDALIAKNANIFGSSRQPESlrkKRGDSIQIVQADMNETASIVAALDESKATRV-WFTTDFYAISkPTRAKEAQLGFNVVDAIKQRpnQVKHVVYNSGAGADEAPTKMQEFWSKVDVErymekelapLQITWSVLRPVAFMENLDDDRNGNPLKKGKVKMLTKPEFPVKYISCMDIGKGSAELLMNPKVYAGQKIDAATCEYTGLELAEILSEVSGAK 247
                 88999************************99985545556666677777666666666632222222.345567766516667889999******9999889*************99999999888887666788889999************************99976666666788999*****************66665555544444455568899999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 1295.14
//
Query:       MMETSP1061-20121228|3220_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 2412.47
//
Query:       MMETSP1061-20121228|3221_1  [L=749]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-06   23.0  28.8    7.8e-06   23.0  20.0    3.4  3  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2   4.9      0.64   2.6e+03      24      86 ..      68     128 ..      61     153 .. 0.42
   2 !   23.0  20.0   1.9e-09   7.8e-06      18      89 ..     190     260 ..     176     281 .. 0.78
   3 ?   -8.1  12.1         1   4.1e+03      50     117 ..     353     417 ..     341     424 .. 0.44

  Alignments for each domain:
  == domain 1    score: -5.2 bits;  conditional E-value: 0.64
   TIGR01622  24 dksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrred 86 
                 +  r+ +R+ +++++++++k  d + d  d d     +r  +  +r+ ++  r+  k+  r +
  MMETSP1061-20121228|3221_1  68 SSMRKSKRKSKKNKNKNKNK-MDCRDD-YDCDACDNCERVLQPTNRSGNSFLRSSSKSSYRIE 128
                 23333333333333333333.121111.12233333333334444444444444444433333 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 1.9e-09
   TIGR01622  18 drdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevr 89 
                 d+dr+rd++r rsR+r+rdR ++r+++rdrd+dr drdrd   d e ++ +++e+e e +++ + + +d + 
  MMETSP1061-20121228|3221_1 190 DDDRDRDRDRSRSRNRNRDRGSDRDRDRDRDYDR-DRDRDCNDDEEDENENENENEDEDDHDGHDDDDDDMT 260
                 7888888888888888888888889999998887.9999999998888888888877776666555555544 PP

  == domain 3    score: -8.1 bits;  conditional E-value: 1
   TIGR01622  50 drrdrdrdkyrdrerrs.rkrreserererekerrredevrrkrkeredrrerrekeerlkeelteeeR 117
                 d  d d d    r++ s  +++e++ +re+ek  +++de +   k+++++ + +e+e    +e +  e 
  MMETSP1061-20121228|3221_1 353 DDDDDDDDDDEPRQGYSvDEESEQGEPREEEKPEQEPDEDEDEDKRDDEQYHENENE----NENEHGEN 417
                 332333333333333331344555566666666566666664444444444444442....22222233 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.51
# Mc/sec: 1938.43
//
Query:       MMETSP1061-20121228|3222_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 2199.82
//
Query:       MMETSP1061-20121228|3223_1  [L=721]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.41
# Mc/sec: 2321.08
//
Query:       MMETSP1061-20121228|3224_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0072   14.5   1.3      0.013   13.6   0.4    1.9  1  TIGR01653 lactococcin_972: bacteriocin, lactococcin 972 family


Domain annotation for each model (and alignments):
>> TIGR01653  lactococcin_972: bacteriocin, lactococcin 972 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.4   3.1e-06     0.013      30      58 ..     234     262 ..     190     279 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.1e-06
   TIGR01653  30 sagggtvwkkyGvdkaYsnYqhnkktHra 58 
                  aggg+    yG++++YsnY+ ++    +
  MMETSP1061-20121228|3224_1 234 PAGGGGGGGAYGQQRHYSNYSLGSSSIAS 262
                 4566666679**********977765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 1382.41
//
Query:       MMETSP1061-20121228|3226_1  [L=841]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    5.0 175.7      0.033   11.2  80.7    3.7  3  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   3.1    0.0047        19     102     137 ..     300     335 ..     286     340 .. 0.48
   2 ?   11.2  80.7     8e-06     0.033      36     237 ..     593     785 ..     558     786 .. 0.53
   3 ?    4.1  56.5    0.0012         5     129     221 ..     743     837 ..     742     841 .] 0.44

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0047
   TIGR02794 102 kqraaaekaakkaeeaakekeekkkqaeeakakqaa 137
                 ++++a e++++++ee ++   +  k++ e+k+k ++
  MMETSP1061-20121228|3226_1 300 RRKLAMEEKEREEEESQRTTPRILKAEREQKQKLKE 335
                 223333333333333333344444444444444222 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 8e-06
   TIGR02794  36 iiqAvlvDpaavaqqanrlqqqekkaakkepkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqa....eeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeakKakaeaeaKakae.eakaKaeae.AkaKAeaeAkaKaeaeakakakae 237
                   +A   D+a+v++ an  +++  +a  + ++  ++  +  ++l ++ ++++k ++  +++++ + ++ ++a++ +   e+   e ++  k+a    ++a+ak++aEak+ka  ea  +k +++eA++kaEeea         k++Ea+ea++k++ae  K++a a+aKa+ae eak+Kae++ AkaKA+aeA+aK +ae + + ++e
  MMETSP1061-20121228|3226_1 593 DANASANDNASVNASANDNANDNDNASTPDQNSSKKSSKWLDRLTKKGKKKNKSKKNSAEKETST-EETVPAPETTE--ETGGDEGKASDKAAeeeaAAAAAKAEAEAKRKADVEA--AKAKEAEAKRKAEEEA--------AKAKEAAEAEAKRKAE--KEAAAAKAKAAAEaEAKRKAEEAaAKAKAAAEAEAKRKAEEEERMRLE 785
                 44666778888888888888888777777733333444444444444333333333333333333.44555555333..2222222223333300003344444444444444444..2222233555555555........3333333333344444..344666667777777777777666777888888777777777666665 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.0012
   TIGR02794 129 eeakakqaaEakakaeaea.KaekkakeeAakkaEeeakakaaaeakkkaEa....eeakkkaeaeakKakaeaeaKakaeeakaKaeaeAkaKAeae 221
                 ++aka ++aEak+kae++a Ka++ a++eA++kaEee + + +a ak++aEa    eea++ka+aea   +ae ++Ka++e  + +aeaeAk KAe+e
  MMETSP1061-20121228|3226_1 743 AKAKAAAEAEAKRKAEEAAaKAKAAAEAEAKRKAEEEERMRLEALAKAEAEAkrieEEAAAKAKAEA---EAEGKRKAEEERLRLEAEAEAKRKAEEE 837
                 3444444444433333333244333444466666666666666666666655444224444444443...4444444444444444554455555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       589  (0.143588); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.86u 0.21s 00:00:01.07 Elapsed: 00:00:01.18
# Mc/sec: 940.70
//
Query:       MMETSP1061-20121228|3227_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   13.8   0.4      0.009   12.8   0.1    1.6  2  TIGR02710 TIGR02710: CRISPR-associated protein, TIGR02710 family


Domain annotation for each model (and alignments):
>> TIGR02710  TIGR02710: CRISPR-associated protein, TIGR02710 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0     0.083   3.4e+02     206     243 ..     199     238 ..     193     240 .. 0.70
   2 !   12.8   0.1   2.2e-06     0.009     101     195 ..     268     360 ..     252     412 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.083
   TIGR02710 206 evtlldeleavikalaaikpelkgsral..tleakrkpil 243
                 e+t  ++  ++i++ a+++p+ +g  +   + +++++pi+
  MMETSP1061-20121228|3227_1 199 EITPEERQLRMIHGMATGQPQEQGAYTHhyQNLQQQQPIF 238
                 56667778899*********99996443114556667776 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.2e-06
   TIGR02710 101 vvvgararqgrVipGterlae.lsdptevlgdkeagearralnafdyvsaeaeledllrrelsaeeaefyeamkklvrayleWdrfeleeAletle 195
                  ++ga a qgrV   + r +e  ++  ++++++e + +r a+ + d+v+  +++  l rr l  e  ++ e ++ l + ++  d +++ + l+ l 
  MMETSP1061-20121228|3227_1 268 PIIGAVALQGRVSNQQARAKEyAENAIAIQKNLEFIRQREAIARQDLVEKDRKYTALRRRLL--ELMKRVEVARCLNKPFQ-PDEYRVMQRLTKLL 360
                 588999999999999999877357889***************************98888888..56668999999999885.57788776665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.89
# Mc/sec: 670.33
//
Query:       MMETSP1061-20121228|3225_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-05   21.1   0.4    7.3e-05   20.5   0.3    1.3  1  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ
  ------ inclusion threshold ------
      0.014   13.6   5.1      0.014   13.6   3.5    2.2  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.3   3.5e-08   7.3e-05      43     141 ..     107     199 .]      92     199 .] 0.91

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3.5e-08
   TIGR03042  43 eeieaakdrldeLkslvakkdWvetrnlihGPlgevrremtylnqsLlpkdkkeakklakelkedLeklDeAAklqdkseaqkayqevaadldayldll 141
                 + ++++ +rl +L+   ak++W e+   ++  + e+r  ++yl+      d ke k+ ak++ +++e++   A+l+++ +  +a +++++++ +++ +l
  MMETSP1061-20121228|3225_1 107 AVLAETSKRLGKLEAYSAKNQWFEVNDELRRYMYETRGAVNYLA------DTKEKKAAAKKFYQSIEEVSLQATLKNEAKCTAAAKDAVSTFASLTSVL 199
                 55678899***********************************8......55677788**********************************9998876 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.35   7.2e+02      10      19 ..       7      16 ..       2      21 .. 0.64
   2 ?   13.6   3.5   6.8e-06     0.014       2      21 ..      22      41 ..      22      48 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.35
   TIGR01409 10 aaaagaaagl 19
                +++ + aa++
  MMETSP1061-20121228|3225_1  7 CSLIASAAAF 16
                5566666666 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 6.8e-06
   TIGR01409  2 sRRdFLkaaaaagaaaglgl 21
                +RRd L + aaagaa+ +++
  MMETSP1061-20121228|3225_1 22 TRRDALAGIAAAGAALIPAA 41
                8***************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 750.45
//
Query:       MMETSP1061-20121228|3230_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-15   52.2   0.1    2.1e-09   33.5   0.0    2.3  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.7e-11   41.1   0.0    2.8e-11   40.4   0.0    1.2  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    4.1e-11   39.7   0.4    5.4e-08   29.4   0.1    2.5  3  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    4.2e-11   40.1   0.0    7.1e-11   39.4   0.0    1.2  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    9.3e-07   25.2   0.0    1.3e-06   24.7   0.0    1.2  1  TIGR00631 uvrb: excinuclease ABC subunit B
    4.9e-06   23.0   0.5    2.9e-05   20.4   0.1    2.0  2  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    0.00035   17.6   0.0       0.23    8.4   0.0    2.9  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
     0.0033   14.0   0.0     0.0063   13.1   0.0    1.4  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
  ------ inclusion threshold ------
      0.037   11.0   0.0      0.081    9.8   0.0    1.5  1  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.1e-07   0.00032       9      89 ..      75     169 ..      67     177 .. 0.74
   2 !   33.5   0.0   4.6e-12   2.1e-09     250     373 ..     434     556 ..     418     601 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 7.1e-07
   TIGR04121   9 argwe.prafQkevleaaeeg...esglliapTGaGKTlavflpsliela..........akekpkkglkvlyitPLkaLakdieraleapieel 89 
                 +r+we p++ Qk ++ ++ e+   +    +apTG+GKT a  +p l +++          + +++ + +++l + P + L ++i   l++++e++
  MMETSP1061-20121228|3230_1  75 RRDWEyPTPVQKLAIPRLIEKdatDAFWCEAPTGSGKTAAFLIPLLQNILvdrtttttttKPTQKGERVTALVLCPTRELCVQIGDVLDQMVEDI 169
                 566653455666555554433010233578**************999999999998866444444599***********************9987 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 4.6e-12
   TIGR04121 250 ttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskillvp.t..nalEllEaaaareav 373
                  +lvF+ tR  +  + ++L +   + + e    Hg ld+++R +  + lk+gk+r+++cT     G+D + +  v++   p++ + ++ RiGR++ + ++   + +v  +    ++l+E + +++  
  MMETSP1061-20121228|3230_1 434 RVLVFVSTRYASQHVARKLRRYGIQ-SSE---LHGKLDQDARLRRLNDLKRGKIRVLLCTDVASRGIDISGLPAVVNYDLPRSTSDFVHRIGRTGRAGQSGVAVSFVTpSveAHMDLIEQRHLQSPP 556
                 689*********9999999998777.444...59************************************************************988777766666641222356777777666655 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   6.2e-14   2.8e-11     206     344 ..     411     551 ..     378     559 .. 0.84

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 6.2e-14
   TIGR01389 206 vkkenkkkqlleylkkere...ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrlieese 344
                 +kk+++++ l + l+ +     +  +++ s+R   +++a++L+  gi++   h+ l+++ R +++++  + + +v++ t     Gid s    v+ +dlP++   +    GR GR G+   a+  + +  ++ +  lie+++
  MMETSP1061-20121228|3230_1 411 MKKTDRTQVLRKLLEADYRdewDRVLVFVSTRYASQHVARKLRRYGIQSSELHGKLDQDARLRRLNDLKRGKIRVLLCTDVASRGIDISGLPAVVNYDLPRSTSDFVHRIGRTGRAGQSGVAVS-FVTPSVEAHMDLIEQRH 551
                 44555555555555543221247789*******************************************************************************************9877654.55556777777777765 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00041      0.19      59      96 ..     106     157 ..      95     177 .. 0.79
   2 ?   -3.8   0.0       1.3   5.9e+02     150     168 ..     286     304 ..     284     307 .. 0.84
   3 !   29.4   0.1   1.2e-10   5.4e-08     273     380 ..     434     533 ..     406     546 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00041
   TIGR03817  59 gtasGkslayllPvlsalaedp..............ratalylaPtkalaad 96 
                  t sGk+ a+l+P+l+ +  d+              r tal l+Pt+ l+  
  MMETSP1061-20121228|3230_1 106 PTGSGKTAAFLIPLLQNILVDRtttttttkptqkgeRVTALVLCPTRELCVQ 157
                 599***************99955555556666677799********999864 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.3
   TIGR03817 150 rWakflralryvvvdechs 168
                 + a++l  lry+v de+ +
  MMETSP1061-20121228|3230_1 286 QLANVLSGLRYLVFDESDR 304
                 67999***********865 PP

  == domain 3    score: 29.4 bits;  conditional E-value: 1.2e-10
   TIGR03817 273 rtltfvrsrrgaevvaleakerlaevdaelaervaayraGylaedrr.eleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvv 380
                 r l+fv +r  ++ va + ++  +  ++el         G l +d r +  + lk+G+++ + +t+    G+disGl avv    P   + +  ++Gr+Gr+gq  ++v
  MMETSP1061-20121228|3230_1 434 RVLVFVSTRYASQHVARKLRRY-GIQSSEL--------HGKLDQDARlRRLNDLKRGKIRVLLCTDVASRGIDISGLPAVVNYDLPRSTSDFVHRIGRTGRAGQSGVAV 533
                 5666666666666666555443.2223333........355555543133468***************************************************99987 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   1.6e-13   7.1e-11     205     332 ..     409     538 ..     401     558 .. 0.88

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 1.6e-13
   TIGR00614 205 veekkskiledllkfivkef..kgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyap 332
                 ++ kk++ ++ l+k+++ ++  + +  +++  +r  +++va +L++ g+++   h  l+++ar +  ++  r +i+v++ t     Gi+ + +  v+ y+lp+s   +   +GR GR g    +v f +p
  MMETSP1061-20121228|3230_1 409 LRMKKTDRTQVLRKLLEADYrdEWDRVLVFVSTRYASQHVARKLRRYGIQSSELHGKLDQDARLRRLNDLKRGKIRVLLCTDVASRGIDISGLPAVVNYDLPRSTSDFVHRIGRTGRAGQSGVAVSFVTP 538
                 5678889999999999966511567789***************************************************999999**********************************99999988776 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.9e-09   1.3e-06     440     568 ..     429     550 ..     396     621 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.9e-09
   TIGR00631 440 vaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnveGkvilyadkitesmekaieeterr 568
                 +++ +rvlv + t+  +++++  l++ gi+   lh ++d   r++ ++dL++g++ vl+  ++   G+D+      a+++ d   + rs+  ++  iGr  r  +    +    +t s+e+ ++  e+r
  MMETSP1061-20121228|3230_1 429 RDEWDRVLVFVSTRYASQHVARKLRRYGIQSSELHGKLDQDARLRRLNDLKRGKIRVLLCTDVASRGIDISGL--PAVVNYD---LPRSTSDFVHRIGRTGRAGQ--SGVAVSFVTPSVEAHMDLIEQR 550
                 34568*****************************************************************865..5666555...79**************9754..4444566788888777777765 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.071        32      15      42 ..      96     123 ..      83     133 .. 0.78
   2 !   20.4   0.1   6.3e-08   2.9e-05     181     295 ..     404     513 ..     377     532 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.071
   TIGR01970  15 aakpqvvLeappGaGkstalPLalLdap 42 
                 +a+++   eap+G+Gk++a+ + lL++ 
  MMETSP1061-20121228|3230_1  96 DATDAFWCEAPTGSGKTAAFLIPLLQNI 123
                 456777889**********999999865 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 6.3e-08
   TIGR01970 181 veirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarva 295
                 ++ r l+++++++  + +++ +e   ++e + vLvf+  +   ++v+++L     +  ++   L+G+l+ +a+ r ++   +G+ +v L+t++a   + i G+  v++  l r++
  MMETSP1061-20121228|3230_1 404 IQLRTLRMKKTDRT-QVLRKLLEADYRDEWDRVLVFVSTRYASQHVARKLR----RYGIQSSELHGKLDQDARLRRLNDLKRGKIRVLLCTDVASRGIDISGLPAVVNYDLPRST 513
                 44444444444432.33455556668999999****988777766666665....6679************************************************99888875 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.1    0.0045       2.1       5      22 ..     104     121 ..     100     138 .. 0.79
   2 !    8.4   0.0    0.0005      0.23     126     295 ..     295     499 ..     276     532 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0045
   TIGR01587   5 eAPtGyGKteaallwalk 22 
                 eAPtG+GKt a l+ +l+
  MMETSP1061-20121228|3230_1 104 EAPTGSGKTAAFLIPLLQ 121
                 8********987776555 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0005
   TIGR01587 126 SvliiDEvhaye.eytkalllallevlk.dvdvkillmsAtlp....kllkeylekielveenealdlke..................................ekrfenqrisliekdkleeisslerllea..lkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis 295
                   l++DE + +  +  k+ +  ll++l      +  l sAt+p     +l++ l +i+  + +  l   +                                   + +++q  +l+ k k    ++l +llea   ++  +vl++v t   +q +  kl+  + +     lH++  +  r ++    l++lk+ + +v+  T v+  ++Dis
  MMETSP1061-20121228|3230_1 295 RYLVFDESDRLLgNGFKGEIDSLLDLLPsSRPPSTWLFSATFPkaiePRLDNVLSSIGATKSPVRLVCANsdrksedeasvssslrkklegsntvasasqyqqvGPASTIQLRTLRMK-KTDRTQVLRKLLEAdyRDEWDRVLVFVSTRYASQHVARKLRRYGIQ--SSELHGKLDQDARLRR----LNDLKRGKIRVLLCTDVASRGIDIS 499
                 56899999866515577789999999995555668899*****555545566666666666666555555777888888888888888888888888888876644444444333333.3344566666654321566788889999999999999999977665..6678999998888888....9999999999999999999999998 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.4e-05    0.0063     487     566 ..     461     539 ..     438     550 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.4e-05
   TIGR00643 487 llhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLvaepk 566
                  lhg+l +d + + l++ + +++ +L++T v   G+d+  +  +v +d  R      H + GR gR  + ++++  ++p+
  MMETSP1061-20121228|3230_1 461 ELHGKLDQDARLRRLNDLKRGKIRVLLCTDVASRGIDISGLPAVVNYDLPRSTSDFVHRI-GRTGRAGQSGVAVSFVTPS 539
                 59*******************************************999999998889988.9999999988887666554 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00018     0.081       9      38 ..      93     122 ..      86     174 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00018
   TIGR03158   9 lkekdadvllntAptGaGKtlaalvevlse 38 
                 +++  +d++  +AptG+GKt a l+++l++
  MMETSP1061-20121228|3230_1  93 IEKDATDAFWCEAPTGSGKTAAFLIPLLQN 122
                 5566789999****************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.95
# Mc/sec: 1275.43
//
Query:       MMETSP1061-20121228|3229_1  [L=836]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.18s 00:00:00.72 Elapsed: 00:00:00.50
# Mc/sec: 2206.86
//
Query:       MMETSP1061-20121228|3231_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 1570.67
//
Query:       MMETSP1061-20121228|3232_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       557  (0.135787); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.44
# Mc/sec: 1940.84
//
Query:       MMETSP1061-20121228|3228_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.46    7.0  19.1       0.65    6.5  13.3    1.1  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  13.3   0.00016      0.65     154     257 ..     175     281 ..     159     293 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00016
   TIGR02927 154 vevdepllevstdkvdteipspv..aGtlleilaeeddtvevGavlakiGddagaedepk.eeekpekseakseekpea.aepkaekkeepkpepkaeekapaakaat 257
                 v v ep   v  +  + ++ spv  +   le   +edd   + + ++  Gdd    +e + +e++pe + +++e++pe+ +ep++e+ +ep+pep+  ++ + ++ at
  MMETSP1061-20121228|3228_1 175 VPVVEPTPVVVEEEEEEDVLSPVdvTNSTLEESFDEDDSEFLPGDVTTGGDDEVVVAEDTpQEPEPE-PMPEPEPEPEPmPEPEPEPMPEPEPEPEDLTPITVPPMAT 281
                 5556666556666666677777621566899999******9*********96544333330344454.4556666666667888888888888888887777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1715.86
//
Query:       MMETSP1061-20121228|3234_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1164.80
//
Query:       MMETSP1061-20121228|3236_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-47  158.7   0.6    6.2e-47  158.0   0.4    1.3  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    3.7e-26   90.1   0.2      5e-26   89.7   0.1    1.3  1  TIGR02825 B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
    6.6e-18   62.4   2.7    3.2e-12   43.7   0.1    2.5  3  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    8.2e-18   62.1   3.9    2.5e-11   40.8   0.1    2.2  2  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
    8.2e-16   56.2   0.1    1.2e-14   52.3   0.0    2.4  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
    2.1e-15   54.2   3.3    1.8e-12   44.6   1.3    2.9  2  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    2.8e-15   54.0   0.7    1.1e-07   29.0   0.0    2.4  3  TIGR00692 tdh: L-threonine 3-dehydrogenase
    1.2e-14   52.0   5.7      5e-08   30.2   0.2    3.0  3  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
    2.3e-12   44.7   3.6    4.2e-06   24.1   0.2    2.5  2  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
    5.9e-07   26.7   2.4    2.2e-05   21.6   0.1    2.2  2  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
    8.4e-07   26.3   5.9     0.0002   18.5   0.5    2.2  2  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
     0.0014   15.1   2.1       0.17    8.2   0.0    2.2  2  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent


Domain annotation for each model (and alignments):
>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.0   0.4   1.8e-49   6.2e-47      13     324 ..      52     378 ..      39     379 .. 0.86

  Alignments for each domain:
  == domain 1    score: 158.0 bits;  conditional E-value: 1.8e-49
   TIGR02824  13 evlelseaplpelkagevlikvaAaGvNr.pDvlQraGk..Yppppgasei.lGLEvaGevvavgeevskfkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTvwsnlfelaklkagetvLihggasGiGttaiqlakalgakvlvtagsdekleaaekLGadvainyreedFvevvkeetegkGvdvilDivggsyleknlkalakdGrlvliall...........ggakaeldlakllakrltltg..stlRarsaeeKaaiaaeleekvwpllaegkvrpvidkv...fpledaakAhellessehiGKivLt 324
                 +v +++e ++pe+k++e li+va aGvN   + +  +G+  ++  ++a++  lG E  G+vvavg+ev++++vGd vc    g +++ey++ +a+ +  vpe     e  +l   ++T  + l +++k+++getvLi ++a+G G  a+q+ak +g++v+ t+gsdek+++ e+LG d++iny+++d  +++++     G dv+l+ vgg  l+  l++la +Grl +i+ +           + ak +ld  +l+ k  t+     t+   +  +   ++a+ +++v  l ae+k++ ++dk+   + le +++A +++ s+++iGK+v++
  MMETSP1061-20121228|3236_1  52 DVATVVELDVPEPKSDEALIRVAYAGVNGgCETFRARGEhsFAGNKDATNFrLGAEGVGHVVAVGSEVENVSVGDAVCF--VGSAFSEYTTSKASMLWVVPEAT--PEFVGLRISALTSCAMLEQTGKIQPGETVLITAAAGGAGHFAVQFAKLAGCQVIGTCGSDEKARVLETLGCDHVINYKTKDVEAELRRIAP-DGLDVVLEGVGGVMLKTALECLAPEGRLLQIGYIseyphndaganENAKHDLDTPELFWKSQTIRRgrQTIYGNAWPKDFGLVASSKNRVLDLYAENKLQSIVDKSpefVGLESVSDAINHMLSGKTIGKVVVK 378
                 67788999********************7368899999722456788888659*************************5..699*****************975..5777888899***********************************************************************9999998766.7******************************98733333222111234457888889988887753125777777788889**********************986332679********************97 PP

>> TIGR02825  B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.1   1.5e-28     5e-26     126     327 .]     164     378 ..     107     378 .. 0.83

  Alignments for each domain:
  == domain 1    score: 89.7 bits;  conditional E-value: 1.5e-28
   TIGR02825 126 ltayfglleicgvkggetvlvnaaagavgsvvgqiaklkgckvvgaagsdekvaylkklgfdvafnyktvksleetlkkaspdgydcyfdnvggefsntvirqmkkfgriaicgaisty..nrtgplppg....papevvi.yqelrme..gfivnrwkgevrqka..lkellkwvlegkiqy...keyviegfenmpaafmgmlkgenlgktivk 327
                 lt+   l +   ++ getvl++aaag  g    q akl gc+v+g++gsdek   l+ lg d ++nykt k +e  l++ +pdg d+ ++ vgg + +t ++ +   gr+   g is+y  n +g   +      +pe     q +r    ++  n w  + +  a   + +l+  +e k+q    k     g+e +  a+  ml g+ +gk +vk
  MMETSP1061-20121228|3236_1 164 LTSCAMLEQTGKIQPGETVLITAAAGGAGHFAVQFAKLAGCQVIGTCGSDEKARVLETLGCDHVINYKT-KDVEAELRRIAPDGLDVVLEGVGGVMLKTALECLAPEGRLLQIGYISEYphNDAGANENAkhdlDTPELFWkSQTIRRGrqTIYGNAWPKDFGLVAssKNRVLDLYAENKLQSivdKSPEFVGLESVSDAINHMLSGKTIGKVVVK 378
                 555444445555899*****************************************************9.77999*******************************************965666765544222257898762577886511444578*9998876621456899999**99963333334459*******************9986 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   4.7e-07   0.00016      28     112 ..      57     135 ..      44     147 .. 0.77
   2 !   43.7   0.1   9.3e-15   3.2e-12     182     252 ..     171     241 ..     157     255 .. 0.88
   3 ?   -2.8   0.0       1.3   4.3e+02     361     385 ..     353     377 ..     335     379 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 4.7e-07
   TIGR01751  28 eqvpvpelgpdevLvavmaagvnyn.nvWaalgePvsvlaarrkrgkddepfhiiGsdasGvvlrvGegvkrvkvGDevvvsclqv 112
                  + +vpe   de+L+ v  agvn   + + a ge    +a+ +     + +f + G+++ G v++vG++v++v vGD v   ++  
  MMETSP1061-20121228|3236_1  57 VELDVPEPKSDEALIRVAYAGVNGGcETFRARGE--HSFAGNKD----ATNFRL-GAEGVGHVVAVGSEVENVSVGDAVCFVGSAF 135
                 56789999999******99999964145566665..45555544....556775.99**********************8877654 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 9.3e-15
   TIGR01751 182 kkpaelkpGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaeiarelGaeavidrqdfdlkgrlpd 252
                 ++  +++pG++vLi  aaGG G +a+q+a+ aG   ++   s++ka++   lG++ vi+ +  d++  l  
  MMETSP1061-20121228|3236_1 171 EQTGKIQPGETVLITAAAGGAGHFAVQFAKLAGCQVIGTCGSDEKARVLETLGCDHVINYKTKDVEAELRR 241
                 466789*****************************************************998888776655 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.3
   TIGR01751 361 vysleeigkaaqkllanelqGkvav 385
                   +le ++ a +++l+++++Gkv v
  MMETSP1061-20121228|3236_1 353 FVGLESVSDAINHMLSGKTIGKVVV 377
                 5678999999999***999999987 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.5   2.3e-08     8e-06      13      84 ..      53     130 ..      38     140 .. 0.77
   2 !   40.8   0.1   7.3e-14   2.5e-11     130     357 ..     134     377 ..     130     378 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.3e-08
   TIGR03451  13 pveledivvpdpgpgevvvkiqacgv...chtdlayre...ggisdefpfllgheaagvveavgegvtdvepgdyvvl 84 
                  ++++++ vp+p ++e++++++ +gv   c t  a  e    g +d   f lg e  g v avg++v++v +gd v +
  MMETSP1061-20121228|3236_1  53 VATVVELDVPEPKSDEALIRVAYAGVnggCETFRARGEhsfAGNKDATNFRLGAEGVGHVVAVGSEVENVSVGDAVCF 130
                 45677788**************99994445555443331224567999**************************9975 PP

  == domain 2    score: 40.8 bits;  conditional E-value: 7.3e-14
   TIGR03451 130 afaektlvaagqctkvdpaadpavagllgcgvmaglgaavntgevkrgdsvavi.gvggvgeaaiagaalagakkiiavdiddkklerarelgathtvnsseedvveaireltggfgadvvidavgrpetykqafyardlagtvvlvgv....p......tpemklelplldvfsrggalk...sswygdclperdfpv.......lvdlylqgrld.ldkfvserislddveeafekmkagevlrsvvv 357
                 af e t  +a     v p+a p+ +gl     ++      +tg+++ g++v +    gg g+ a+  a+lag + +i    +d+k    ++lg  h++n +++dv +++r ++   g dvv++ vg     k a+      g+++++g     p      + + k +l   ++f +  +++    + yg++ p +df +       ++dly + +l+ +     e ++l+ v +a+++m +g+ +  vvv
  MMETSP1061-20121228|3236_1 134 AFSEYTTSKA-SMLWVVPEATPEFVGLRIS-ALTSCAMLEQTGKIQPGETVLITaAAGGAGHFAVQFAKLAGCQ-VIGTCGSDEKARVLETLGCDHVINYKTKDVEAELRRIAP-DGLDVVLEGVGGV-MLKTALECLAPEGRLLQIGYiseyPhndagaNENAKHDLDTPELFWKSQTIRrgrQTIYGNAWP-KDFGLvassknrVLDLYAENKLQsIVDKSPEFVGLESVSDAINHMLSGKTIGKVVV 377
                 5666665544.4556789999999998544.4455556668**********9862579**************86.66667778899999**********************986.599********86.5899**************9534444222221345788999999999998886222689****99.57765222222257888888875233345688*****************9999886 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   3.5e-17   1.2e-14      16     246 ..      55     275 ..      45     286 .. 0.78
   2 ?    0.1   0.0      0.27        91     288     333 ..     332     377 ..     320     378 .. 0.92

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 3.5e-17
   TIGR02817  16 alvdielakPkpkgrdllvevkavsvnPvdtkvrkk...vapea..eelkilGwdaaGvvkavGeevtlfkvGdevfyaGalerpGsnaefhlvderivgkkPkslsfaeaaalPltaitawellfdrlkieedvagekralliiGaaGGvgsiliqlarqlteltviatasraesqewvkelGahavidh.skplkaqleklkleevsyvisltqtdqhleeivellaPqGrlali 246
                 ++v+++  +P+pk+ + l+ v    vn      r++   + + +       lG + +G v+avG+ev+   vGd v + G+     + +e+    + +    P++    e   l ++a+t+  +l    ki+       +++li+ aaGG g  ++q+a+ l++ +vi+t+   e ++ +++lG ++vi++ +k+++a+l++++ +  + v+        l+   e laP Grl  i
  MMETSP1061-20121228|3236_1  55 TVVELD--VPEPKSDEALIRVAYAGVNGGCETFRARgehSFAGNkdATNFRLGAEGVGHVVAVGSEVENVSVGDAVCFVGS-----AFSEYTTSKASMLWVVPEAT--PEFVGLRISALTSCAMLEQTGKIQ-----PGETVLITAAAGGAGHFAVQFAK-LAGCQVIGTCGSDEKARVLETLGCDHVINYkTKDVEAELRRIAPDGLDVVLEG-VGGVMLKTALECLAPEGRLLQI 275
                 455555..55555555666666666666655555541112232211233459****************************8.....67788888888888888864..577889999****99998877777.....4579****************995.99**************************97479**********9999988865.5677899999*******98655 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.27
   TIGR02817 288 nevaelvdeGkikttlaetlGainaanlkrahaliesgkarGkivl 333
                 n+v +l  e k+++ ++++   +  + +  a + + sgk+ Gk+v+
  MMETSP1061-20121228|3236_1 332 NRVLDLYAENKLQSIVDKSPEFVGLESVSDAINHMLSGKTIGKVVV 377
                 788899999999******9999**********************97 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   1.3   5.2e-15   1.8e-12      97     244 ..     135     278 ..      39     284 .. 0.74
   2 !    7.3   0.0    0.0012       0.4     292     324 .]     347     379 ..     327     379 .. 0.78

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 5.2e-15
   TIGR02823  97 yseyarvkadwvvplPeglslkeamilGtAGfTAaLsvealekagltpeegevlVtGAtGgVgslavalLsklGyevvavtgkkeeeeylkelGakevisreeleee.kkkplekerwagavDtvGgkvlanvlkqlkyggavaacGla 244
                 +sey+  ka+++  +Pe+        +G     A  s   le++g  +    vl+t A+Gg g +av++ + +G +v+ + g  e++ +l++lG ++vi+ ++ + e + + ++ +  + +++ vGg +l+++l+ l  +g    +G  
  MMETSP1061-20121228|3236_1 135 FSEYTTSKASMLWVVPEATPE----FVGL-RISALTSCAMLEQTGKIQPGETVLITAAAGGAGHFAVQFAKLAGCQVIGTCGSDEKARVLETLGCDHVINYKTKDVEaELRRIAPDGLDVVLEGVGGVMLKTALECLAPEGRLLQIGYI 278
                 555555555555555554332....2222.13566788999***98888889***********************************************987655443789******************************99988876 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0012
   TIGR02823 292 leelvkeisleelpevlekllagevkGRvvvkv 324
                 +++  + + le + ++++++l+g++ G+vvvk+
  MMETSP1061-20121228|3236_1 347 VDKSPEFVGLESVSDAINHMLSGKTIGKVVVKI 379
                 44555679***********************97 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.2e-08   7.5e-06      11      84 ..      54     129 ..      48     133 .. 0.85
   2 !   29.0   0.0   3.3e-10   1.1e-07     118     261 ..     134     276 ..     130     286 .. 0.83
   3 ?   -2.1   0.0      0.98   3.3e+02     317     338 ..     354     377 ..     328     379 .. 0.70

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.2e-08
   TIGR00692  11 avltevpvpelgknevlikvkatsicGtdvh..iynwdewaqkrikvpqvlGhevaGevvgiGeevegvkvGdyvs 84 
                 a+++e++vpe+  +e li+v  + + G          + +a ++  +   lG e +G vv +G eve+v vGd v 
  MMETSP1061-20121228|3236_1  54 ATVVELDVPEPKSDEALIRVAYAGVNGGCETfrARGEHSFAGNKDATNFRLGAEGVGHVVAVGSEVENVSVGDAVC 129
                 6789*******************99876444004445668889999999************************996 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 3.3e-10
   TIGR00692 118 vfaeyvvvpadnifknpkdidpelaaiqeplGnavdtvlesdl.aGesvlvsG.aGpiGllavavakaaGasqvivsdkneyrlelakkvGatrvvnvakedlvkvvaeltsgeGvdvvlelsGapkaleqgldavangGrvallg 261
                 +f+ey    a+ ++ +p+  ++ +      l        ++++  Ge+vl++  aG  G +av  ak aG  qvi +  ++ + ++   +G ++v+n + +d+  ++  ++  +G+dvvle  G    l+++l+ +a+ Gr+  +g
  MMETSP1061-20121228|3236_1 134 AFSEYTTSKASMLWVVPEATPEFVGLRISALTSCAMLEQTGKIqPGETVLITAaAGGAGHFAVQFAKLAGC-QVIGTCGSDEKARVLETLGCDHVINYKTKDVEAELRRIA-PDGLDVVLEGVGG-VMLKTALECLAPEGRLLQIG 276
                 69999999999999999987776666567776655555555542699999985279*************97.7999999999**************************997.69*******9986.579************86655 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.98
   TIGR00692 317 k.ldefekgfelmrsGks.Gkvil 338
                   l+   ++ + m sGk+ Gkv++
  MMETSP1061-20121228|3236_1 354 VgLESVSDAINHMLSGKTiGKVVV 377
                 346777778888888876578775 PP

>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.5   9.1e-08   3.1e-05      13      83 ..      53     128 ..      37     131 .. 0.73
   2 !   30.2   0.2   1.5e-10     5e-08     137     276 ..     132     266 ..     129     276 .. 0.87
   3 ?    2.0   0.0     0.056        19     341     366 ..     351     376 ..     308     378 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 9.1e-08
   TIGR02818  13 plkieevdvelpkkgevlvrivatgv...chtdaftlsgadp....egvfpvilghegagiveavgegvtslkvgdhv 83 
                   +++e+dv  pk  e l+r++ +gv   c  ++f   g+ +    +      lg eg g v+avg  v ++ vgd v
  MMETSP1061-20121228|3236_1  53 VATVVELDVPEPKSDEALIRVAYAGVnggC--ETFRARGEHSfagnKDATNFRLGAEGVGHVVAVGSEVENVSVGDAV 128
                 34799******************9994334..566665554321114556678***********************98 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 1.5e-10
   TIGR02818 137 tstfseytvvaeislakinkeaalekvcllgcgvttgigavlntakveegatvavf.glggiglsviqgaklakasriiaidineakfelakklgatdlvnpkdydkpiqeviveltdggvdysfecignvnvmraalesa 276
                  s+fseyt  ++ s+  + +ea+ e v l    +t     + +t k++ g+tv +    gg g  ++q akla++ ++i+    ++k+ + + lg+  ++n k   k ++  +  ++  g+d  +e +g v ++++ale+ 
  MMETSP1061-20121228|3236_1 132 GSAFSEYTT-SKASMLWVVPEATPEFVGLRISALT-SCAMLEQTGKIQPGETVLITaAAGGAGHFAVQFAKLAGC-QVIGTCGSDEKARVLETLGCDHVINYKT--KDVEAELRRIAPDGLDVVLEGVGGV-MLKTALECL 266
                 489****96.7889999******999998776665.5678999**********9972579*************96.688888999****************986..558888999**************99.57999*995 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.056
   TIGR02818 341 tetmpledineafdlmhegksirtvi 366
                  e ++le++ +a+++m  gk+i  v+
  MMETSP1061-20121228|3236_1 351 PEFVGLESVSDAINHMLSGKTIGKVV 376
                 45679*****************8876 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.2     4e-08   1.4e-05      14      85 ..      54     130 ..      44     133 .. 0.78
   2 !   24.1   0.2   1.2e-08   4.2e-06     136     368 ..     129     376 ..     127     378 .. 0.65

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4e-08
   TIGR03989  14 feveeielddPkegevkvklaasGl...Chs....dehlvtGdlplekyPvvgGheGaGvvekvGpgvtelkeGdhvvl 85 
                  +v+e+++ +Pk++e ++++a +G+   C +     eh  +G+  +++  +  G eG G v++vG++v++++ Gd v +
  MMETSP1061-20121228|3236_1  54 ATVVELDVPEPKSDEALIRVAYAGVnggCETfrarGEHSFAGNKDATN--FRLGAEGVGHVVAVGSEVENVSVGDAVCF 130
                 5799*****************999843343322224566666666555..5569*********************9975 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 1.2e-08
   TIGR03989 136 cllg.tfseytvveeasvvkidkdip....ldkaalvgCgvttGfGsavkaadvkaGdtvvvv.GiGGvGinavqGaavaGarkvvavdpvefkrekalklGathavasieealelvaeltnGkgadkaiitvgevegelieealklvakgGrvvvtg.lakl........adedvklnlleltllqkelk...GalfGeanpr......adiprllelykaGklk.ldelvtktykldeinegyqdlleGknirGvi 368
                 c +g +fseyt+ + + +  + +  p    l   al +C          +++++++G+tv++    GG G  avq a++aG + +      + k    + lG  h+++  ++ +e           d   ++++ v g ++++al+ +a  Gr + +g ++++        ++ + +l++ el   +++++    +++G+a p+      +   r+l+ly + kl+ + +   +   l+ + ++ + +l+Gk i  v+
  MMETSP1061-20121228|3236_1 129 CFVGsAFSEYTTSKASMLWVVPEATPefvgLRISALTSC------AMLEQTGKIQPGETVLITaAAGGAGHFAVQFAKLAGCQVI-GTCGSDEKARVLETLGCDHVINYKTKDVEAELRRI---APDGLDVVLEGVGGVMLKTALECLAPEGRLLQIGyISEYphndaganENAKHDLDTPELFWKSQTIRrgrQTIYGNAWPKdfglvaSSKNRVLDLYAENKLQsIVDKSPEFVGLESVSDAINHMLSGKTIGKVV 376
                 666527999998776665555555541111444444444......4456899********997257***************9755.55566889999999*******77665555433222...33444455667778899999999999999987663455411111110333445556666666666643225899999886322222456789999999887534444455567999999999999999997766 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0064       2.2      15      80 ..      58     128 ..      50     135 .. 0.79
   2 !   21.6   0.1   6.3e-08   2.2e-05     159     221 ..     171     234 ..     130     249 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0064
   TIGR03201  15 eleiaelgagevvvkvaGcGv...chtdldyyydgvrtnh.alplalGheisGrviqagagaas.lvGkav 80 
                 el+++e+ ++e +++va  Gv   c t      ++   n+ a  + lG e  G+v+  g++ ++  vG av
  MMETSP1061-20121228|3236_1  58 ELDVPEPKSDEALIRVAYAGVnggCETFRARGEHSFAGNKdATNFRLGAEGVGHVVAVGSEVENvSVGDAV 128
                 7899************998886668887777777777665277899**********999886651577777 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 6.3e-08
   TIGR03201 159 avqaglkkgdlviviGv.GGvGgyavqvakalGaavvaidideeklemvkkaGadlilnpkdis 221
                      +++g+ v++  + GG G +avq ak  G  v++    +ek  ++++ G d ++n k + 
  MMETSP1061-20121228|3236_1 171 EQTGKIQPGETVLITAAaGGAGHFAVQFAKLAGCQVIGTCGSDEKARVLETLGCDHVINYKTKD 234
                 444678899888777666*****************************************98653 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.3   0.00015      0.05       2      69 ..      63     130 ..      62     143 .. 0.71
   2 !   18.5   0.5   5.8e-07    0.0002     139     256 ..     161     279 ..     134     292 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00015
   TIGR03366   2 alaeGevlvrvllatvCGs.......dlhtvaGrregklpsvlGheavGevvalgseeaaavdgeklavGqRvvw 69 
                 ++++ e+l+rv  a v G          h +aG ++ ++   lG e vG+vva+gse+      e+++vG+ v +
  MMETSP1061-20121228|3236_1  63 EPKSDEALIRVAYAGVNGGcetfrarGEHSFAGNKD-ATNFRLGAEGVGHVVAVGSEV------ENVSVGDAVCF 130
                 677889999999999977422222224588888765.56778**************98......44555555544 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 5.8e-07
   TIGR03366 139 Catatvaaaleaagd.legrrvlvl.GaGmLGLtaaaaaeerGasrviavDpsaeRrelaaafGaealaeeeelaevr.keatdgravdvalelsGasaaveaalesldvgGvvvlvGsva 256
                  ++ t  a+le++g+   g +vl++  aG  G  a+  a+ +G  +vi++  s+e++ + +++G  ++++ ++++ +   ++    + dv+le  G    +++ale l   G +  +G ++
  MMETSP1061-20121228|3236_1 161 ISALTSCAMLEQTGKiQPGETVLITaAAGGAGHFAVQFAKLAGC-QVIGTCGSDEKARVLETLGCDHVINYKTKDVEAeLRRIAPDGLDVVLEGVGG-VMLKTALECLAPEGRLLQIGYIS 279
                 4567889********667999999725799*************9.8***********************9887765553455667889*****8886.46889999998888888888654 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00051      0.17      64      93 ..     100     129 ..      81     137 .. 0.85
   2 !    6.2   0.3    0.0021      0.72     183     248 ..     173     238 ..     167     258 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00051
   TIGR02819  64 aglvlgheitgevievgrdveflkigdivs 93 
                 +++ lg e  g+v+ vg++ve + +gd v 
  MMETSP1061-20121228|3236_1 100 TNFRLGAEGVGHVVAVGSEVENVSVGDAVC 129
                 57889**********************875 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0021
   TIGR02819 183 tagvktgstvyi.agagpvglaaaasarllgaavvivgdlneerlaqa.rsfgcetvdlkkdatlaeq 248
                 t  +++g tv i a ag  g  a + a+l g  + ++g   ++  a+   ++gc+ v   k + ++  
  MMETSP1061-20121228|3236_1 173 TGKIQPGETVLItAAAGGAGHFAVQFAKLAG--CQVIGTCGSDEKARVlETLGCDHVINYKTKDVEAE 238
                 56789*****9856789************77..55677777777666537899986544444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 946.34
//
Query:       MMETSP1061-20121228|3235_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       430  (0.104827); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 2934.56
//
Query:       MMETSP1061-20121228|3238_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 2087.51
//
Query:       MMETSP1061-20121228|3237_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 1902.64
//
Query:       MMETSP1061-20121228|3241_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 867.36
//
Query:       MMETSP1061-20121228|3240_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-07   27.6   0.2    7.1e-07   26.8   0.1    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    6.6e-06   23.0   0.1    2.7e-05   21.0   0.1    1.8  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    7.8e-05   20.1   0.9     0.0009   16.6   0.6    2.1  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0011   16.4   0.0     0.0035   14.8   0.0    1.7  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family
     0.0027   14.9   0.0     0.0046   14.1   0.0    1.3  1  TIGR00478 tly: hemolysin TlyA family protein
     0.0052   13.9   0.9      0.033   11.3   0.3    2.2  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.012   12.7   0.5      0.083   10.0   0.4    2.0  1  TIGR01177 TIGR01177: TIGR01177 family protein
      0.049   10.9   1.7      0.094    9.9   0.3    1.9  2  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
      0.054   10.4   0.0      0.094    9.6   0.0    1.3  1  TIGR00536 hemK_fam: methyltransferase, HemK family


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1   1.6e-09   7.1e-07     159     219 ..     438     498 ..     418     510 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.6e-09
   TIGR00406 159 kdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklenle 219
                  +k+v+D+ c  G  s+ a+++gaa++++vD  + a+e  r+N++lN+  ++  + + n++
  MMETSP1061-20121228|3240_1 438 SGKRVLDLCCYHGGFSLNAVQQGAARAIGVDSSADAIETCRTNARLNGFGKDDDDENANDD 498
                 459*********************************************9998888877643 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   5.9e-08   2.7e-05     287     374 ..     432     536 ..     400     549 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 5.9e-08
   TIGR00479 287 ealelqgeekvvDaycGvGtftlp.lAkqaksvvgvevvkesvekakrnAelngi........anveflageleevl.......pkls.kekisadkvllDPpRk 374
                 +++el    +v+D+ c  G f+l  + ++a++++gv+   +++e  + nA+lng         an +   +++  +l       +++  + + ++d+v+lDPp+ 
  MMETSP1061-20121228|3240_1 432 HMAELCSGKRVLDLCCYHGGFSLNaVQQGAARAIGVDSSADAIETCRTNARLNGFgkddddenANDDANDDDASSTLryvrsdiADYMrNCDETFDVVVLDPPKL 536
                 57899999***************72556699**********************8633322211333333333333331111000333212356788888888875 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.6     2e-06    0.0009      90     170 ..     440     539 ..     429     595 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2e-06
   TIGR03534  90 lkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke...................veflksdlleal.eekgkfdlivsNPPYipea 170
                  +vlDl++  G   l   ++   a+ i+vD s++A++++r Na+ +g  +                   ++ ++sd+ + + + +++fd++v  PP ++ +
  MMETSP1061-20121228|3240_1 440 KRVLDLCCYHGGFSLNAVQQ-GAARAIGVDSSADAIETCRTNARLNGFGKddddenanddandddasstLRYVRSDIADYMrNCDETFDVVVLDPPKLAPS 539
                 48*********988887766.899********************998766666666666666777777777777777777777788999999999977744 PP

>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   7.7e-06    0.0035      52     162 ..     438     563 ..     427     593 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 7.7e-06
   TIGR00095  52 vgakvLdlfaGsgalglEALsRgakkvvfveqdkkvaktlkeNlstlk..................lskeqatvlndaeralavlakketvfdiiylDPPfevklleailelllenkilnekalivvee 162
                  g +vLdl+   g ++l A   ga++++ v++++ +++t   N ++                    + + + ++++++   ++ + + + +fd++ lDPP    +++a+  +  +++ ln +a+  +  
  MMETSP1061-20121228|3240_1 438 SGKRVLDLCCYHGGFSLNAVQQGAARAIGVDSSADAIETCRTNARLNGfgkddddenanddandddA-SSTLRYVRSD--IADYMRNCDETFDVVVLDPPKLAPSVKALQRASRKYHSLNRDAIKLIDP 563
                 6789***************************************877667789999888888754422.2233444444..566666667789********99999999999888888888887666554 PP

>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     1e-05    0.0046      75     112 ..     438     475 ..     429     488 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1e-05
   TIGR00478  75 knkivlDvGsStGGFtdcalqkGAkkvygvdvgknqle 112
                  +k vlD+    GGF+  a+q+GA +  gvd +   +e
  MMETSP1061-20121228|3240_1 438 SGKRVLDLCCYHGGFSLNAVQQGAARAIGVDSSADAIE 475
                 57889**************************9985544 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.3   7.2e-05     0.033      46     121 ..     435     530 ..     405     533 .. 0.73
   2 ?   -3.6   0.0       2.7   1.2e+03     141     160 ..     578     597 ..     571     602 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.2e-05
   TIGR01983  46 kkleglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplk...................kieyelksveelaeeekesfDvvl 121
                 +  +g++vlD+ c  G +s    ++ga+  +g+D s+++ie+ ++ a+ ++                     +++y  +++ + +++ +e+fDvv+
  MMETSP1061-20121228|3240_1 435 ELCSGKRVLDLCCYHGGFSLNAVQQGAArAIGVDSSADAIETCRTNARLNGFGkddddenanddandddassTLRYVRSDIADYMRNCDETFDVVV 530
                 44569********8777777777777666**************99998777654555556666777777777777777777777777777777776 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.7
   TIGR01983 141 ellkpggilflstinrtlks 160
                  + k+gg+ fl t+ +  +s
  MMETSP1061-20121228|3240_1 578 MTQKDGGKFFLETVQQASIS 597
                 44578899***999887766 PP

>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.4   0.00018     0.083     178     266 ..     434     543 ..     431     580 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00018
   TIGR01177 178 arvkegdrvlDPfcGTGgilIEAgLlGi.kviglDidekmveGariN..LehYgied.fkvkrldakk......lplr.....s......esvdaiatDpPYgrstkaag 266
                 a++  g+rvlD  c  Gg+ + A   G+ + ig+D  ++ +e +r+N  L+ +g +d  +  + da++      l+ +     +      e++d +++DpP +  + +a 
  MMETSP1061-20121228|3240_1 434 AELCSGKRVLDLCCYHGGFSLNAVQQGAaRAIGVDSSADAIETCRTNarLNGFGKDDdDENANDDANDddasstLRYVrsdiaDymrncdETFDVVVLDPPKLAPSVKAL 543
                 677889*********************6378***************9778889887754444444443111111222222222033333377777777777666655555 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.3   0.00021     0.094      52      97 ..     436     482 ..     424     501 .. 0.85
   2 ?   -1.0   0.1      0.45   2.1e+02      91     123 ..     494     530 ..     490     532 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00021
   TIGR02021  52 slkGkkvlDAGCGtGllsielAkrGa.ivkavDiseklvelarkrae 97 
                 + +Gk+vlD  C  G +s +  ++Ga +  +vD s++ +e+ r++a+
  MMETSP1061-20121228|3240_1 436 LCSGKRVLDLCCYHGGFSLNAVQQGAaRAIGVDSSADAIETCRTNAR 482
                 679*********************963789*********99887764 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.45
   TIGR02021  91 larkraekedeaenveFevnd....leslegkfDavv 123
                  a+++a++ d +  ++++ +d    +++ +++fD+vv
  MMETSP1061-20121228|3240_1 494 NANDDANDDDASSTLRYVRSDiadyMRNCDETFDVVV 530
                 5788888888888888888872223455669999987 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00021     0.094     115     164 ..     439     487 ..     419     489 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00021
   TIGR00536 115 lkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkle 164
                  k++lDl++  G  +l    + + a  i+vD s da++  + Na+ +++ 
  MMETSP1061-20121228|3240_1 439 GKRVLDLCCYHGGFSLNAVQQGA-ARAIGVDSSADAIETCRTNARLNGFG 487
                 389*************8555555.99******************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.53
# Mc/sec: 1608.77
//
Query:       MMETSP1061-20121228|3242_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-05   20.7   0.0    6.7e-05   20.1   0.0    1.2  1  TIGR01388 rnd: ribonuclease D


Domain annotation for each model (and alignments):
>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.6e-08   6.7e-05     109     163 ..     268     324 ..     264     379 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.6e-08
   TIGR01388 109 gesvgydklVkevleveldKses..rtDWlaRPLtdkqleYAaaDVtyLlelyekLs 163
                 g+ vg ++lV  vl+v+l+Ks++  r+ W   PL+   ++YAa D +  +++ + L 
  MMETSP1061-20121228|3242_1 268 GRTVGLARLVSGVLGVTLPKSKKlaRSHWSGAPLAIPEVDYAARDAWAAAAVLDLLA 324
                 678999**************995449********************99888877664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1920.67
//
Query:       MMETSP1061-20121228|3239_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1550.87
//
Query:       MMETSP1061-20121228|3243_1  [L=1116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-90  302.3   0.0    1.7e-50  169.7   0.0    4.0  4  TIGR00490 aEF-2: translation elongation factor aEF-2
    1.5e-33  113.7   0.0    1.1e-11   41.5   0.0    3.1  3  TIGR00484 EF-G: translation elongation factor G
    4.1e-28   95.8   0.0    1.1e-14   51.4   0.0    4.7  4  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    7.9e-16   55.3   0.0    7.4e-13   45.5   0.0    3.1  3  TIGR01393 lepA: GTP-binding protein LepA
    1.2e-10   38.5   0.3    6.3e-08   29.6   0.0    2.1  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
      2e-10   38.5   0.0    2.2e-07   28.6   0.0    2.3  2  TIGR00231 small_GTP: small GTP-binding protein domain
      2e-07   27.6   0.0    1.1e-06   25.2   0.0    2.1  3  TIGR00503 prfC: peptide chain release factor 3
    4.7e-07   26.7   0.4    1.4e-05   21.8   0.0    2.7  3  TIGR00485 EF-Tu: translation elongation factor Tu
    4.4e-06   23.2   0.0    1.6e-05   21.4   0.0    1.8  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    3.2e-05   20.7   0.1      0.022   11.3   0.0    2.2  2  TIGR00487 IF-2: translation initiation factor IF-2
    0.00058   17.0   0.1       0.31    8.0   0.0    2.2  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    0.00083   16.3   0.0     0.0016   15.4   0.0    1.4  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
  ------ inclusion threshold ------
      0.037   10.8   0.0       0.43    7.3   0.0    2.0  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
       0.04   11.4   0.0        4.6    4.7   0.0    2.4  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.018       5.3      19      40 ..     187     208 ..     178     212 .. 0.87
   2 !   92.0   0.0   1.8e-29   5.3e-27      44     216 ..     243     413 ..     230     419 .. 0.93
   3 !   32.0   0.0   2.6e-11   7.8e-09     247     368 ..     527     661 ..     523     673 .. 0.80
   4 !  169.7   0.0   5.7e-53   1.7e-50     388     702 ..     707    1034 ..     693    1042 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.018
   TIGR00490  19 irnigivahidhgkttlsdnll 40 
                  r i +v h+ hgkt+l d l+
  MMETSP1061-20121228|3243_1 187 RRGIALVGHLHHGKTSLIDTLM 208
                 5899***************997 PP

  == domain 2    score: 92.0 bits;  conditional E-value: 1.8e-29
   TIGR00490  44 gmiseelageqlfldfdeqeqergitidaanvsmv.heyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrlinelkltaeelqerlikiiaevnklikkmapeefkdkwkvrvedgsvafgsayynwaisvpimkk 216
                 g  s   +g  ++ d+ + e+er +++++  +++   +  g+ y + ++d pghv+f  +   a+ra+dga++ v+a eg++  te ++rq + e +   l + k+drl+ el+l +++   +l+ +++ +nkl+++ +  ++    ++    g vaf sa++ w  ++ +m +
  MMETSP1061-20121228|3243_1 243 GSASCSKTGTLRYTDITKSERERQMSLQSCPITLAlPDTRGKSYALTIVDCPGHVQFHDESVAALRALDGAVLCVDAAEGILLHTELLIRQIVGEGLPICLVVTKLDRLVTELRLPPRDAYFKLLNVVESANKLVREASHGRY---PELSPSRGNVAFSSALHGWLFTLQSMAE 413
                 56677778999********************998626899*******************************************************************************************************...6789999************999888866 PP

  == domain 3    score: 32.0 bits;  conditional E-value: 2.6e-11
   TIGR00490 247 ldmvikhlpspaeaqkyriaviwkgdlnseagkamlncdpegp..lavvitkivvdkhagev.avgrlysgaikkgsevylv..........dskakariqqvgvymgpervevdeipagnivavvglkeavage 368
                 +dmv+kh+p p  a k ++a  ++g l++   + ml+c+ +    l + +tk+    +     a +r+y+g+ ++g++v ++          ++ a a i+ +++  g  r +v   +agn v ++g+  ++a  
  MMETSP1061-20121228|3243_1 527 VDMVVKHVPPPSAAAKGKVARCYSGPLDAPFVRDMLRCESRTAekLVMHVTKLYSSSDGRSFdALARIYCGTCRPGQKVRVLgegfvpdeddEDTAVATIESIAIPRGRSRTKVTLATAGNWVLLTGVDATIAKT 661
                 79*************************************98642277789999887776655489************99765222222221123456889999************************98777653 PP

  == domain 4    score: 169.7 bits;  conditional E-value: 5.7e-53
   TIGR00490  388 epvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirek.agvevetsepivvyretvtgtspv.vegkspnkhnrlyivvepleesvlqafkegkikdvkvkkkeiakeli.eagldkeeakrveevye.....gnllinvtr....giqyldevkelilegfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqilemk.qegdm.vtikakvpvaemfgfagairgategralwstefagfekvpre 702 
                  e  + +a+e  n+ +lpk+++ lr v+k  p v+  + ee+geh++ g gel+++ + +  r+   +vev++++p v  retv  ts+    + + nk+n+l ++ ep+++ + + ++ g +k ++ +++++ + ++ + g d   ++ v+ + +      nll++ t         l+  +  i++gf+ a r+gp+ +e+v g k+k++++ l + a++rg  qvip++r +++++ll a p l+ep+ kv i+ p d++ a+   ++ rrg i++ +   g +   ++  +p+ + fgf  ++r+ t+g+a+    f  +  vp +
  MMETSP1061-20121228|3243_1  707 ESTMKMALEPLNPAELPKMVQGLRSVSKAYPMVRTRV-EESGEHVLFGTGELYMDCVLHDLRHVyGDVEVKVADPSVALRETVVDTSSLkCFAETTNKKNKLTFIAEPMDDGLAEKLESGTVKLGEWDQRKVGRFFQsQYGWDLLSSRSVWAFGDsptrgTNLLLDDTLpsevDKSLLNSCRSSIVQGFQWATREGPLCEEPVRGAKLKVLEVTLADKAIYRGGGQVIPTARRTVHSSLLTATPRLMEPIYKVQIQCPGDMVAAIQPVLKRRRGHIVQDRpISGTLlYNVRGFIPLLDSFGFETDLRTYTQGQAMVHSVFDHWAIVPGD 1034
                  67789*****************************998.789***************99999998346*****************99886267899***************************************998357**********997652222279***9885221134579***************************************************************************************************876256665157999**********************998888888888765 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.7e-13     8e-11      51     141 ..     257     352 ..     247     359 .. 0.87
   2 !   29.7   0.0   1.4e-10     4e-08     404     490 ..     707     793 ..     688     805 .. 0.91
   3 !   41.5   0.0   3.7e-14   1.1e-11     586     679 ..     938    1033 ..     887    1041 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.7e-13
   TIGR00484  51 dwmeqekerGititsaattvewkd.....frinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiG 141
                 d  + e+er +++ s   t    d     + + ++d PGhv f  e   +lr ldGav+ +da  G+   +e + rq+   ++P  + v k+d++ 
  MMETSP1061-20121228|3243_1 257 DITKSERERQMSLQSCPITLALPDtrgksYALTIVDCPGHVQFHDESVAALRALDGAVLCVDAAEGILLHTELLIRQIVGEGLPICLVVTKLDRLV 352
                 77788999998887776666554444444****************************************************************986 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.4e-10
   TIGR00484 404 ePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkref.kvevnvGkPqvayretirkkae 490
                 e  +++a+eP + a+  km   l  +++  P  ++ + eesg+ ++ G Gel++d +++ l+  + +vev+v  P va ret+  +++
  MMETSP1061-20121228|3243_1 707 ESTMKMALEPLNPAELPKMVQGLRSVSKAYPMVRTRV-EESGEHVLFGTGELYMDCVLHDLRHVYgDVEVKVADPSVALRETVVDTSS 793
                 567899*****************************98.589********************999867***************988776 PP

  == domain 3    score: 41.5 bits;  conditional E-value: 3.7e-14
   TIGR00484  586 lalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegse..eresvkvvkaevPlsemfGyatdlrsatqGraeysmeflkyaevPk 679 
                   +++ +  +a P l+ePi kv+++ P +++  +   l+rrrg i      + + +  v+  +Pl + fG+ tdlr+ tqG+a     f+++a vP 
  MMETSP1061-20121228|3243_1  938 RTVHSSLLTATPRLMEPIYKVQIQCPGDMVAAIQPVLKRRRGHIVQDRpiSGTLLYNVRGFIPLLDSFGFETDLRTYTQGQAMVHSVFDHWAIVPG 1033
                  5566777889********************************987655224456789***********************************9996 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   3.8e-17   1.1e-14       2     149 ..     188     372 ..     187     378 .. 0.85
   2 !   12.1   0.0     3e-05    0.0089     195     285 ..     566     663 ..     552     676 .. 0.76
   3 ?   -1.6   0.0      0.42   1.2e+02     345     387 ..     742     786 ..     730     799 .. 0.80
   4 !   23.3   0.0   1.3e-08   3.7e-06     391     474 ..     950    1034 ..     942    1040 .. 0.88

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 3.8e-17
   TIGR01394   2 rniaiiahvDhGkttlvDklLkqsg........vlrekeeveervmDsndlererGitilakntavkykd............................tkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpee.vvdevfdLfvelga 149
                 r ia++ h  hGkt l+D+l++ +           +++e+ +e   + + ++ + G +  +k+ +++y d                            + + ivD PGh  f  e    l  +dg++l vDa+eG l  t   +++ +  gl + +v+ k+Dr  ++ +    d+ f L+  +++
  MMETSP1061-20121228|3243_1 188 RGIALVGHLHHGKTSLIDTLMEPTLqpsdrwdpLDSSSEDPTENKTNNSGINSNGGSASCSKTGTLRYTDitksererqmslqscpitlalpdtrgksYALTIVDCPGHVQFHDESVAALRALDGAVLCVDAAEGILLHTELLIRQIVGEGLPICLVVTKLDRLVTELRLpPRDAYFKLLNVVES 372
                 88*****************987554111222222234667778888888899999999***************************************99****************************************************************8877664145666677666655 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3e-05
   TIGR01394 195 adkdeplqllvttldydeylGri..aigrverGkvkkgqqvallkkd.......gkiekariskllafeglerveideaeaGdivavaGledieigetia 285
                   + e l ++vt+l  ++  Gr   a++r++ G+ + gq+v++l +        + ++ a i+++   +g +r+++  a+aG+ v ++G+++ +i++t +
  MMETSP1061-20121228|3243_1 566 SRTAEKLVMHVTKLY-SSSDGRSfdALARIYCGTCRPGQKVRVLGEGfvpdeddEDTAVATIESIAIPRGRSRTKVTLATAGNWVLLTGVDA-TIAKTAT 663
                 556678899999984.44567753479***************986533332233688889999**************************975.5655543 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.42
   TIGR01394 345 eteeadkfevsGrGeLhlsiLietmrr..eGfelsvskPkvivke 387
                  +ee+ ++   G GeL +  ++ ++r      e++v+ P v ++e
  MMETSP1061-20121228|3243_1 742 RVEESGEHVLFGTGELYMDCVLHDLRHvyGDVEVKVADPSVALRE 786
                 45666779999**************97324589********9987 PP

  == domain 4    score: 23.3 bits;  conditional E-value: 1.3e-08
   TIGR01394  391 kklePieeltidvpeefvgavieklgkrkgelkdmeskgs.GrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkge 474 
                  + +ePi +++i++p ++v+a+   l +r+g++++ ++ +      ++  iP    +Gf+t++ t t+G++++++vfd+++ + g+
  MMETSP1061-20121228|3243_1  950 RLMEPIYKVQIQCPGDMVAAIQPVLKRRRGHIVQDRPISGtLLYNVRGFIPLLDSFGFETDLRTYTQGQAMVHSVFDHWAIVPGD 1034
                  579****************************998887654155678889*****************************9877665 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.012       3.6       4      29 ..     188     213 ..     185     220 .. 0.85
   2 !   45.5   0.0   2.5e-15   7.4e-13      39     133 ..     255     349 ..     245     356 .. 0.93
   3 ?    2.0   0.0     0.038        11     397     436 ..     950     989 ..     932    1026 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.012
   TIGR01393   4 rnfsiiahidhGkstladrllektka 29 
                 r ++++ h+ hGk+ l d l+e t  
  MMETSP1061-20121228|3243_1 188 RGIALVGHLHHGKTSLIDTLMEPTLQ 213
                 78899****************98865 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 2.5e-15
   TIGR01393  39 lldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkid 133
                 + d    erer + +++ +++l   ++ g++y l ++d PGhv f  e   +l a +Ga+l vdaa G+   t   +   + + l i  v+ k+d
  MMETSP1061-20121228|3243_1 255 YTDITKSERERQMSLQSCPITLALPDTRGKSYALTIVDCPGHVQFHDESVAALRALDGAVLCVDAAEGILLHTELLIRQIVGEGLPICLVVTKLD 349
                 6788888**************************************************************99999999999999999999999988 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.038
   TIGR01393 397 eveePyvkatiivpeeylgailelcqekrgvlkkleyldk 436
                 ++ eP+ k++i  p ++++ai  +++++rg++++ + ++ 
  MMETSP1061-20121228|3243_1 950 RLMEPIYKVQIQCPGDMVAAIQPVLKRRRGHIVQDRPISG 989
                 678***************************9988776665 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0016      0.47       3      22 ..     190     209 ..     189     216 .. 0.91
   2 !   29.6   0.0   2.1e-10   6.3e-08      49     116 ..     285     351 ..     250     361 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0016
   TIGR00475   3 iataGHvDHGKttLlkaltg 22 
                 ia+ GH+ HGKt+L+ +l +
  MMETSP1061-20121228|3243_1 190 IALVGHLHHGKTSLIDTLME 209
                 899************99965 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 2.1e-10
   TIGR00475  49 dkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkll..gikelivvltKaDrv 116
                  + l+++D PGH +f  + +a++ ++d+a+L vda eG+   t+  L++ + +  g++ +  v+tK+Dr 
  MMETSP1061-20121228|3243_1 285 SYALTIVDCPGHVQFHDESVAALRALDGAVLCVDAAEGILLHTE--LLIRQIVgeGLP-ICLVVTKLDRL 351
                 3789**************************************97..556665511566.78899****96 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0023      0.66       4      25 ..     188     209 ..     185     217 .. 0.86
   2 !   28.6   0.0   7.6e-10   2.2e-07      48     124 ..     281     350 ..     243     365 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0023
   TIGR00231   4 ikivivGhvdvGKstLlnsllk 25 
                 + i++vGh  +GK++L++ l +
  MMETSP1061-20121228|3243_1 188 RGIALVGHLHHGKTSLIDTLME 209
                 5699*************99875 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 7.6e-10
   TIGR00231  48 edGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDl 124
                  +Gk y ++++D +G+++f         e+ + l+ +d+++l +d+ eg   +t+ +i++   +g pi lvv+K D 
  MMETSP1061-20121228|3243_1 281 TRGKSYALTIVDCPGHVQF-------HDESVAALRALDGAVLCVDAAEGILLHTELLIRQIVGEGLPICLVVTKLDR 350
                 57889**************.......*************************************************95 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.9   5.6e+02       9      31 ..     185     207 ..     181     208 .. 0.85
   2 !   25.2   0.0   3.8e-09   1.1e-06      56     146 ..     257     352 ..     238     373 .. 0.81
   3 ?   -1.2   0.0      0.39   1.1e+02     428     488 ..     742     805 ..     710     819 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1.9
   TIGR00503   9 dkrrtfaiishpdaGkttltekv 31 
                 + rr +a++ h   Gkt+l + +
  MMETSP1061-20121228|3243_1 185 STRRGIALVGHLHHGKTSLIDTL 207
                 579**************998765 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 3.8e-09
   TIGR00503  56 dwmemekqrGisittsvlqf...dy..rdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdi 146
                 d  + e++r +s+ ++ + +   d   +   + ++d pGh +f +++  +l a d a++ +daa G+  +t  l+       lpi   + kldr +
  MMETSP1061-20121228|3243_1 257 DITKSERERQMSLQSCPITLalpDTrgKSYALTIVDCPGHVQFHDESVAALRALDGAVLCVDAAEGILLHTELLIRQIVGEGLPICLVVTKLDRLV 352
                 5555666666666655444311122113456889***********************************************************965 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.39
   TIGR00503 428 slden.dlivaavGvlqfdvvvarlkeeyn.veavyesvnvalarwveea.dakkleefkrkne 488
                  ++e+ + ++   G l +d v   l++ y+ ve ++ + +val   v+ +   k + e   k +
  MMETSP1061-20121228|3243_1 742 RVEESgEHVLFGTGELYMDCVLHDLRHVYGdVEVKVADPSVALRETVVDTsSLKCFAETTNKKN 805
                 3455568899999****************65999999999999887765415666766554443 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.066        19      14      33 ..     189     208 ..     181     242 .. 0.67
   2 !   21.8   0.0   4.8e-08   1.4e-05      44     133 ..     252     344 ..     229     357 .. 0.72
   3 ?   -1.2   0.0      0.48   1.4e+02     205     260 ..     567     627 ..     557     673 .. 0.66

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.066
   TIGR00485  14 nvgtighvdhgkttltaait 33 
                  +  +gh+ hgkt+l  ++ 
  MMETSP1061-20121228|3243_1 189 GIALVGHLHHGKTSLIDTLM 208
                 57789********9976543 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 4.8e-08
   TIGR00485  44 akkydeidkapeekargitintahvey...etekrhya..hvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvv 133
                 + +y +i k   e++r ++++++ +     +t  + ya   vdcpgh ++  + ++    +dga+l v aa+g +  t   i      g+p  +v
  MMETSP1061-20121228|3243_1 252 TLRYTDITK--SERERQMSLQSCPITLalpDTRGKSYAltIVDCPGHVQFHDESVAALRALDGAVLCVDAAEGILLHTELLIRQIVGEGLPICLV 344
                 455666655..5677777777776654223678888984459********************************999874333333335554443 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.48
   TIGR00485 205 revdkpfllaiedvfs.itgrgtvvtgrvergevkvgeeveivglk.....etkkttvtgve 260
                 r+ +  +++ +   +s   gr   +  r+  g+ + g++v ++g       + ++t v+ +e
  MMETSP1061-20121228|3243_1 567 RTAE-KLVMHVTKLYSsSDGRSFDALARIYCGTCRPGQKVRVLGEGfvpdeDDEDTAVATIE 627
                 4444.4566777766515799999*****************998433333344555555555 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.4e-08   1.6e-05      60     121 ..     256     322 ..     185     336 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.4e-08
   TIGR00483  60 ldklkeerergvt.....idvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddg 121
                  d  k erer ++     i +a+   + + y +tivd+pgh +f  + ++     d avl v++ +g
  MMETSP1061-20121228|3243_1 256 TDITKSERERQMSlqscpITLALPDTRGKSYALTIVDCPGHVQFHDESVAALRALDGAVLCVDAAEG 322
                 47778999998763333367899999999**********************************9887 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0015      0.43      90     109 ..     190     209 ..     159     215 .. 0.81
   2 !   11.3   0.0   7.5e-05     0.022     136     199 ..     287     350 ..     280     356 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0015
   TIGR00487  90 vtimGhvDhGktsLLdsirk 109
                 ++++Gh  hGktsL+d++ +
  MMETSP1061-20121228|3243_1 190 IALVGHLHHGKTSLIDTLME 209
                 6789************9865 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7.5e-05
   TIGR00487 136 kitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDk 199
                  +t +D PGh  f        ++ D +vl v a +G+   t+  i      + Pi +++ k+D+
  MMETSP1061-20121228|3243_1 287 ALTIVDCPGHVQFHDESVAALRALDGAVLCVDAAEGILLHTELLIRQIVGEGLPICLVVTKLDR 350
                 5899************9999*******************************************7 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0027      0.78       7      25 ..     189     207 ..     183     215 .. 0.88
   2 !    8.0   0.0    0.0011      0.31      81     118 ..     286     323 ..     250     371 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0027
   TIGR03680   7 niglvGhvDhGkttlvkal 25 
                  i+lvGh  hGkt+l+ +l
  MMETSP1061-20121228|3243_1 189 GIALVGHLHHGKTSLIDTL 207
                 699************9987 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0011
   TIGR03680  81 rkvsfvDaPGhetLmatmlsGaalmdgalLviaaneev 118
                  ++++vD+PGh  +    ++    +dga+L ++a+e +
  MMETSP1061-20121228|3243_1 286 YALTIVDCPGHVQFHDESVAALRALDGAVLCVDAAEGI 323
                 56789***********99999999************98 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   5.5e-06    0.0016      82     122 ..     288     328 ..     256     353 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.5e-06
   TIGR02034  82 fivadtPGheqytrnmatgastadlavllvdarkGvleqtr 122
                 + + d+PGh+q+  + +++  + d avl vda +G+l  t 
  MMETSP1061-20121228|3243_1 288 LTIVDCPGHVQFHDESVAALRALDGAVLCVDAAEGILLHTE 328
                 5689********************************98885 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.13        38     171     197 ..     183     209 ..     154     211 .. 0.74
   2 ?    7.3   0.0    0.0015      0.43     250     299 ..     302     351 ..     277     382 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.13
   TIGR03594 171 eeeepikiaiiGrpNvGKStLvNallg 197
                 +++++  ia++G    GK +L+ +l++
  MMETSP1061-20121228|3243_1 183 TTSTRRGIALVGHLHHGKTSLIDTLME 209
                 23445789**************99975 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0015
   TIGR03594 250 rtlkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlv 299
                 +++ a++  d ++l +Da egi  + + ++++i+ eg ++ +vv K D +
  MMETSP1061-20121228|3243_1 302 ESVAALRALDGAVLCVDAAEGILLHTELLIRQIVGEGLPICLVVTKLDRL 351
                 56677888888899999999999999999999999999999999999977 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.027         8      12      40 ..     181     209 ..     172     213 .. 0.78
   2 ?    4.7   0.0     0.016       4.6      99     144 ..     308     353 ..     298     379 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.027
   TIGR03598  12 qlpedklpeiafaGrSNvGKSsliNaLtn 40 
                 +  +++   ia++G    GK sli +L++
  MMETSP1061-20121228|3243_1 181 NETTSTRRGIALVGHLHHGKTSLIDTLME 209
                 445567789*****************986 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.016
   TIGR03598  99 enLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkk 144
                 ++L g vl vD+  ++  + + l++ +  +++p+ +v+tK+D+l +
  MMETSP1061-20121228|3243_1 308 RALDGAVLCVDAAEGILLHTELLIRQIVGEGLPICLVVTKLDRLVT 353
                 679999************************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.72u 0.18s 00:00:00.89 Elapsed: 00:00:00.61
# Mc/sec: 2414.75
//
Query:       MMETSP1061-20121228|3244_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-08   32.9   2.7    1.4e-08   32.5   1.9    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
  ------ inclusion threshold ------
       0.03   11.7   1.2      0.042   11.2   0.8    1.1  1  TIGR02737 caa3_CtaG: cytochrome c oxidase assembly factor CtaG


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   1.9   6.6e-12   1.4e-08     151     299 ..      10     182 ..       3     185 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 6.6e-12
   TIGR00817 151 misniefvarnifsKkiltkk...................sldklnlyalisililfllspiafiveglklltreflqaiskvnvlkl...vtvslv..aalg.ifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkakkk 299
                 m+sn+ f  r ++ K +                        ld+lnl   +  + + ll+++++++ g  l  ++   a s+++  ++   + + l+  + +g  f  y+  ++ ll r+s + ++  N+ +R++ Iv   l+f+ +is++  +G++++ a  +l+   ka+k 
  MMETSP1061-20121228|3244_1  10 MASNLCFSLRGLYQKLFRRGAaaalsslsssslsslssslKLDDLNLQFRMQQTGVALLAVPTLLLHGKGLFLHATGAA-SHLTTPEFvalIQRYLLwsVGNGlAFSSYNLASTYLLTRISVVHHAALNCTRRIFAIVCTGLLFRIPISMQSMVGIGISFASFMLFTWAKANKT 182
                 7888888888888776655558888888888888888888889999877777688888888888888888877665555.6666554411144444413445535788****************************************************99999988877765 PP

>> TIGR02737  caa3_CtaG: cytochrome c oxidase assembly factor CtaG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8     2e-05     0.042      71     197 ..      53     177 ..      42     182 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2e-05
   TIGR02737  71 hliltahmvqmavlylvvppllllGiPawlyekilerpfvkavlklltkPlialllfnGl.fslyhvPlvfdtvkqspllhtlitllllvaaflmwwpllaklkelqklsdlkklGyifangilltPa 197
                  l l + m q  v++l+vp+lll G   +l+ +  + +     +  l++  +   + nGl fs y +   +   + s + h+ +++   + a++    ll +++    ++++  +G  fa  +l+t a
  MMETSP1061-20121228|3244_1  53 DLNLQFRMQQTGVALLAVPTLLLHGKGLFLHATGAASHLTTPEFVALIQRYLLWSVGNGLaFSSYNLASTYLLTRISVVHHAALNCTRRIFAIV-CTGLLFRIPI--SMQSMVGIGISFASFMLFTWA 177
                 678999*************************99888777766665566666667889**88*********************999988888865.5678888875..467888899999999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1118.43
//
Query:       MMETSP1061-20121228|3245_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0037   14.5   0.1     0.0049   14.1   0.1    1.2  1  TIGR03943 TIGR03943: TIGR03943 family protein


Domain annotation for each model (and alignments):
>> TIGR03943  TIGR03943: TIGR03943 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.2e-06    0.0049      51     112 ..       9      67 ..       5     100 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.2e-06
   TIGR03943  51 tklkrrlvylllllpillgllvppaalgsdtaaqrglafsslkqdrkepqaslpalkpievs 112
                 ++++ +++++l ll +ll+++ p  al+s + +q+  ++  ++ ++ ++qa ++ +++ +++
  MMETSP1061-20121228|3245_1   9 AHSRISARMWLSLLSLLLLVVSPLDALSSPHQQQQQQQQ--QQRQAHQQQAHRQGQRS-TRT 67 
                 566667899******************999999996666..44455555555544444.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       346  (0.0843491); expected 82.0 (0.02)
Passed bias filter:                      228  (0.0555826); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.45
# Mc/sec: 381.30
//
Query:       MMETSP1061-20121228|3246_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    7.6  16.9      0.064    8.7   5.9    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.23    6.9  11.9       0.31    6.4   3.7    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.9   3.1e-05     0.064     705     832 ..      46     169 ..      33     182 .. 0.28
   2 ?    4.0   0.8   0.00083       1.7     791     954 ..     335     393 ..     301     408 .. 0.38

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 3.1e-05
   TIGR02168 705 lekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerlesle 832
                  ++e+++++ +l++ ++++  ++r+++++++ l++l++ v+q +      +++ ++++e     ++++e+++ +l++ae++++++++++ + +++++ +++ + +l++e+ +  + +++  ++++++ 
  MMETSP1061-20121228|3246_1  46 SRSERNAAAAQLRDFQTTAGGISRDIASTSSMLAELTQLVRQKS----LFQDDSQKVNELVIRIKTAIENLNGRLDAAERQSTQQKRTLGKNSQSAQLSSNVVGQLQEEFGQAAAGFKTILQQRTDVL 169
                 22222333333333333333333333333333333322222222....11111112222222222222222223333333333333333333333333333333333333333333322222222222 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.00083
   TIGR02168 791 aeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyele 954
                 +                                                                                                          l++ ++ ++++e+++ el + +++l +++++++  ++++e +++e +++++ + ++ 
  MMETSP1061-20121228|3246_1 335 DY---------------------------------------------------------------------------------------------------------LRDRADAMEQVESNIVELGAVYNRLATMVHEHKDMVQRVEDNVDEANSMINLSLNTL 393
                 22.........................................................................................................222222233333333333333333333333333333333333333333333333222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.7   0.00015      0.31     244     351 ..      47     156 ..      34     181 .. 0.40
   2 ?    4.5   0.3   0.00059       1.2     354     918 ..     335     391 ..     303     408 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00015
   TIGR02169 244 ekelaeleeelekleeeieelekeleeiekkleelnkkieklg..eeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekk 351
                 ++e +++ ++l +++  +  + + +++  + l+el++ +++++  ++++ +v e +  +k  ie+l+  ++++e++  + +++l k  +  +  ++ + +l++e  + ++
  MMETSP1061-20121228|3246_1  47 RSERNAAAAQLRDFQTTAGGISRDIASTSSMLAELTQLVRQKSlfQDDSQKVNELVIRIKTAIENLNGRLDAAERQSTQQKRTLGKNSQSAQLSSNVVGQLQEEFGQAAA 156
                 34444444444444444444444444444444444444444332244444444444444444444444444444444444444444444444444444444444433322 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.00059
   TIGR02169 354 eklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasieGvlGtvaqLgkveerYalAiEvAaGnrlnnvVVeddavAkeaIellkerkagratFLPLnkmrskerdlsilaedGvidfavdlvefdekyepvvkyvlgdTlvvedleaarrlmgkfRlVtLeGellekSGaitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrk 918
                 +                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             l++ +  +e+ e ++ eL + ++ L+  ++e++  ++++e++++e+++ i+   +
  MMETSP1061-20121228|3246_1 335 DY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRDRADAMEQVESNIVELGAVYNRLATMVHEHKDMVQRVEDNVDEANSMINLSLN 391
                 22............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3344444444444444444444444444444444444444444444444444222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       333  (0.0811799); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.53
# Mc/sec: 1060.89
//
Query:       MMETSP1061-20121228|3247_1  [L=960]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (960 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       318  (0.0775232); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.21s 00:00:00.76 Elapsed: 00:00:00.56
# Mc/sec: 2222.97
//
Query:       MMETSP1061-20121228|3249_1  [L=727]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-07   29.1   2.5    4.5e-05   20.9   0.2    3.5  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
  ------ inclusion threshold ------
      0.016   13.2   0.1        2.7    6.2   0.0    3.9  5  TIGR00756 PPR: pentatricopeptide repeat domain
      0.019   12.6   0.3        1.2    6.7   0.1    2.4  2  TIGR04038 tatD_link_rSAM: radical SAM protein, TatD family-associated


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.019        26      36      84 ..      15      63 ..      11      83 .. 0.81
   2 !    3.9   0.0    0.0053       7.2      58      96 ..     154     192 ..     117     200 .. 0.88
   3 !   20.9   0.2   3.3e-08   4.5e-05      76     230 ..     299     461 ..     285     465 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.019
   TIGR02521 36 qLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekA 84
                qLa +++++g+++ A+   e+A+e+ +   d    +  y+q +  l +A
  MMETSP1061-20121228|3249_1 15 QLADAWIRRGEFQLARSVYEEAIESVSRVRDFTILMDAYLQFEEGLLEA 63
                89999*******************9999999999888888876655555 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0053
   TIGR02521  58 leldpkdadanlalAlyyqqlgelekAeesfrkAltlkp 96 
                 l ++p+d   +l +A +y + g+ ++A+++ +++l++ +
  MMETSP1061-20121228|3249_1 154 LRQNPDDVGEWLKRARMYRTSGQIHQAAAALEEGLKTVK 192
                 67899999999****************999999998755 PP

  == domain 3    score: 20.9 bits;  conditional E-value: 3.3e-08
   TIGR02521  76 qqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYe...qparsyeNaglcalkagdtekaekyltralkidpkrp..esllelaelklkkgqyaeAralleryqqtv..eqtaesLwL.giriakalgdaaaakeyeaqLq 230
                 ++lg  + +++++ +A+ +k +++    N+ tFL +qk +ee    +e+ ie   ++     +++y    l  +   ++e+ +  ++r l++ p +   e +l+  + + ++g  ++A  ++++  qtv  eq+  +  L  +++a+ lg+ a    y++  q
  MMETSP1061-20121228|3249_1 299 ESLGTVQTTKDAYGRAMDQKVATPLHILNFATFLKEQKYFEESFSAYERGIELFRFPaakLIWKAYMDSFLKRYGGTKVERTRDLFQRCLEVCPPEEstEFFLSNGRFEEEHGLTKRALGVYKQMCQTVpsEQKYTAYQLfIAKTAQYLGQTATRDIYQNAVQ 461
                 6789999*******************************************998665511167899999999999999**************988654115577777888888999**************7644444444413589999****99999999876 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.002       2.7       2      28 ..      12      38 ..      11      41 .. 0.89
   2 ?   -2.5   0.0       1.2   1.6e+03       3      11 ..      46      54 ..      46      55 .. 0.86
   3 ?   -3.1   0.0       1.8   2.4e+03      13      26 ..     216     229 ..     214     231 .. 0.80
   4 ?   -3.3   0.0       2.1   2.9e+03      13      23 ..     257     267 ..     256     268 .. 0.79
   5 ?    1.8   0.0     0.051        70      13      27 ..     410     424 ..     409     426 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.002
   TIGR00756  2 tyntlisglckagrveeAlelfdeMke 28
                 ++ l ++  ++g++  A+++++e +e
  MMETSP1061-20121228|3249_1 12 LWSQLADAWIRRGEFQLARSVYEEAIE 38
                68899999***************9876 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.2
   TIGR00756  3 yntlisglc 11
                +++l++++ 
  MMETSP1061-20121228|3249_1 46 FTILMDAYL 54
                79*****96 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.8
   TIGR00756  13 agrveeAlelfdeM 26 
                  ++v +A+ l+d++
  MMETSP1061-20121228|3249_1 216 CKDVAKARNLLDRI 229
                 689999*9999986 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 2.1
   TIGR00756  13 agrveeAlelf 23 
                 + ++++Al++ 
  MMETSP1061-20121228|3249_1 257 QESWDDALDII 267
                 6789****986 PP

  == domain 5    score: 1.8 bits;  conditional E-value: 0.051
   TIGR00756  13 agrveeAlelfdeMk 27 
                 +g ++ Al ++++M+
  MMETSP1061-20121228|3249_1 410 HGLTKRALGVYKQMC 424
                 688999********7 PP

>> TIGR04038  tatD_link_rSAM: radical SAM protein, TatD family-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.1   0.00088       1.2     129     186 ..     419     475 ..     412     480 .. 0.77
   2 ?    3.4   0.0    0.0089        12     130     184 ..     511     565 ..     504     572 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00088
   TIGR04038 129 tyqkicrpklkedayeavleFikeakklikevivsavelegvdiekceklaeelgvkf 186
                  y+++c+++ +e+ y+a + Fi ++++++ + ++  +  + v+ +   ++a +l+ +f
  MMETSP1061-20121228|3249_1 419 VYKQMCQTVPSEQKYTAYQLFIAKTAQYLGQTATRDIYQNAVQ-DLQDEVAARLCLEF 475
                 6**************************9988777666555443.23345666666665 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0089
   TIGR04038 130 yqkicrpklkedayeavleFikeakklikevivsavelegvdiekceklaeelgv 184
                 +++   ++ +e++++++l   +++++ +++v   a e+ g d +++ +l++e ++
  MMETSP1061-20121228|3249_1 511 WNEFEISHGNEETFREMLRIKRSVEASFSTVNYNAAEMSGTDAKATAALSNEEAM 565
                 556666677889*******99***************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1919.12
//
Query:       MMETSP1061-20121228|3248_1  [L=894]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 2226.38
//
Query:       MMETSP1061-20121228|3252_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-11   42.7   0.0    2.1e-11   42.0   0.0    1.3  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
      6e-06   24.3   0.0    1.1e-05   23.5   0.0    1.3  1  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase
    0.00058   17.1   0.2     0.0015   15.7   0.0    1.6  2  TIGR03448 mycothiol_MshD: mycothiol synthase
    0.00067   16.1   0.1     0.0012   15.3   0.0    1.3  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
     0.0025   15.0   0.1      0.004   14.3   0.1    1.2  1  TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component
     0.0094   12.9   0.0      0.013   12.4   0.0    1.2  1  TIGR01686 FkbH: FkbH domain


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0     3e-14   2.1e-11      55     115 ..     239     300 ..     229     307 .. 0.91

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 3e-14
   TIGR01575  55 eaeilniavkpeyqgqGiGraLlkelikeakerg.vkeifLEVResNvaAqaLYkklgfkei 115
                   +i n+ v+ ++++qG+++aL++ +i++ak +  +k+++LEV   N+ A +LY+k+gf+ +
  MMETSP1061-20121228|3252_1 239 HLHIKNMDVHYKKRRQGVANALMELIIDHAKTQTdAKVLTLEVLGANQPAVQLYRKFGFEAR 300
                 6799*************************998877************************976 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.5e-08   1.1e-05      88     137 ..     251     301 ..     237     315 .. 0.88

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.5e-08
   TIGR03585  88 vk.kgkGsvleealleyafeklklkkLkleVlesNekalklyekfgfeleg 137
                 ++ +g+ + l+e +++ a  + + k L leVl  N+ a++ly kfgfe  +
  MMETSP1061-20121228|3252_1 251 KRrQGVANALMELIIDHAKTQTDAKVLTLEVLGANQPAVQLYRKFGFEARE 301
                 34489999***************************************9765 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.63   4.3e+02     143     168 ..      52      76 ..      38      93 .. 0.69
   2 !   15.7   0.0   2.2e-06    0.0015     236     288 ..     247     300 ..     238     303 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.63
   TIGR03448 143 pelkvpdgvtvrayagaeddaelLrv 168
                 ++ +  ++++vra +g+edd+ ++ v
  MMETSP1061-20121228|3252_1  52 AK-SSSADFVVRAVEGGEDDSTVVDV 76 
                 33.44556778888888888777665 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.2e-06
   TIGR03448 236 vdpaaqgrGLGkaLtliGlkhleerglravl.LYveadneaAvrtYekLgFtva 288
                 v+ + +++G+ +aL+ + + h +++++++vl L v + n+ Av++Y+k gF+  
  MMETSP1061-20121228|3252_1 247 VHYKKRRQGVANALMELIIDHAKTQTDAKVLtLEVLGANQPAVQLYRKFGFEAR 300
                 6678899******************999998689*****************976 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-06    0.0012     162     215 ..     246     300 ..     240     314 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.8e-06
   TIGR03103 162 avdpqaakpGvGealvralaehfqar.glayldlsvlhdneqaialyeklgfrri 215
                  v+ + ++ Gv +al+  +++h +++ +++ l l vl  n+ a++ly k+gf++ 
  MMETSP1061-20121228|3252_1 246 DVHYKKRRQGVANALMELIIDHAKTQtDAKVLTLEVLGANQPAVQLYRKFGFEAR 300
                 68889999**************9876267789********************875 PP

>> TIGR00828  EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   5.8e-06     0.004      80     136 ..      91     150 ..      77     156 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.8e-06
   TIGR00828  80 eekranraeid..dgaikGlkvgll..GPlaGvGdpifwgtlrPvlaalgaslalsGnllG 136
                 + +++ r +id    ai+Glkvgll  GP+ GvG         P+  alg    l G  lG
  MMETSP1061-20121228|3252_1  91 DRAQKKRDAIDttKAAIDGLKVGLLyvGPIIGVGTYFTTTGDNPLNEALGNY-GLFGGALG 150
                 4445555666622579*******9656*******987777778888888753.34444445 PP

>> TIGR01686  FkbH: FkbH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     2e-05     0.013     203     321 ..     181     299 ..     167     301 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2e-05
   TIGR01686 203 eLvrrTnQfnltaerlseedlkqtmeee.aeevltvalsDrfgdsGlvgilllekkegtlvikalviSCRvlgrkveerllrllveqakelgahkvrltyrrterNvlveslleelgfed 321
                 e + r   +   a++ s++ + q +  + + ++ tv  + r +++   g+ ++e  +++l+ik++ +  +    +v + l++l++++ak +  +k +lt +    N+++ +l+++ gfe 
  MMETSP1061-20121228|3252_1 181 EGLLRQQDMGFVAVSTSDDTVDQRIYAPtNGIIATVDTQLRNSPNSPPGVRTVEGLPSHLHIKNMDVHYKKRRQGVANALMELIIDHAKTQTDAK-VLTLEVLGANQPAVQLYRKFGFEA 299
                 5566777888889999999999999988677999*******************************************************887774.688999999************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1349.69
//
Query:       MMETSP1061-20121228|3251_1  [L=773]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.18s 00:00:00.54 Elapsed: 00:00:00.73
# Mc/sec: 1397.64
//
Query:       MMETSP1061-20121228|3250_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.5   6.0      0.025   12.3   4.2    1.5  1  TIGR00986 3a0801s05tom22: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR00986  3a0801s05tom22: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.2     6e-06     0.025      21      82 ..     304     364 ..     293     366 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6e-06
   TIGR00986  21 veeeedaedqedvdeedssdsDfeddeeetllDrivaLkdivpptkrqkiadkystttsfvk 82 
                 v+ +++ +d +d d++d++d D + d++  l Dr +a     + t+rq +      t + vk
  MMETSP1061-20121228|3250_1 304 VNSKANHNDDDDDDDDDDDDDDDD-DDKWRLCDRTAAASTTTTTTTRQAMVARDAATIKSVK 364
                 566666666666555555555544.56699******************99877776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1942.88
//
Query:       MMETSP1061-20121228|3254_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   15.8   3.5          2    6.0   0.2    3.9  3  TIGR00336 pyrE: orotate phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.2   0.00049         2      93     141 ..      94     140 ..      33     169 .. 0.60
   2 !    5.9   0.0   0.00053       2.2      90     163 ..     215     288 ..     169     296 .. 0.73
   3 !    1.8   0.0    0.0093        38     106     167 ..     381     439 ..     361     444 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00049
   TIGR00336  93 KdhGeggkivGelkegkkvvvveDvittGtsileaveaiqeagaevagv 141
                  +h  +        +++k++v++ v+  G ++++a  a+++    v ++
  MMETSP1061-20121228|3254_1  94 NGHALK--HASFQMKNNKTIVLNTVTRFGYALQHASDALKNDHQVVLAA 140
                 233322..22333455577777777777777777777777666555544 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00053
   TIGR00336  90 keaKdhGeggkiv.GelkegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsaeeevekeyelk 163
                   +++hG+  ++v Ge+k++ + vv+  v   G +++ a++ +++   +v++++         a +e+++++e+ 
  MMETSP1061-20121228|3254_1 215 AAVRQHGQALQLVsGEMKND-RRVVLAAVRHYGRALQFAARPMRNDPEIVKEAVRQNGDALWHASHEMKSNKEVA 288
                 44668***999873566666.6677889*************9999999998887655555556666666666665 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.0093
   TIGR00336 106 kegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsaeeevekeyelkllsl 167
                  + ++ +v e v+  G ++++  e++++ +  v  v  +l+++  +a + +++++ ++ + l
  MMETSP1061-20121228|3254_1 381 CQKDREIVFEAVTRNGMALKHVSEILKNTDFGVSSV--ALEQNP-NACRYLSRDWIVEAITL 439
                 456799999******************999998875..444444.77777777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1950.03
//
Query:       MMETSP1061-20121228|3256_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1816.42
//
Query:       MMETSP1061-20121228|3255_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-12   44.8   0.0    1.5e-05   23.3   0.0    2.9  3  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.91   3.7e+03       5      20 ..     218     233 ..     216     235 .. 0.82
   2 !   23.3   0.0   3.8e-09   1.5e-05      21     104 ..     285     375 ..     281     381 .. 0.82
   3 !   18.2   0.0   1.4e-07   0.00059     106     142 ..     396     432 ..     385     433 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.91
   TIGR01444   5 iGAniGdvslvfarav 20 
                 +G+n+G  +l  +r++
  MMETSP1061-20121228|3255_1 218 VGCNKGFDALQTLRMG 233
                 9*****9999888876 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 3.8e-09
   TIGR01444  21 aegrviafEPlpdllekleenvklnnlkn..vkllnaAvgdregeleftvsddatgnsslaads........elaees..eieVevvtlddlveea 104
                 ++g++++fEP p+++++l++ ++  + ++   +++n Av+++ g++ f++++ + + ++l + +        e    +     V+++tl+d+v+++
  MMETSP1061-20121228|3255_1 285 RKGEMHCFEPMPQTVSRLKHSASTLGYDKkgYTVINSAVSKEVGTALFSSAE-NINRDGLENVGlatckrveE----RkhCSGVDMTTLKDYVAKH 375
                 56899********************999999***************998887.77777888888777755322....244346*********9987 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 1.4e-07
   TIGR01444 106 lekvdllKiDvEGaEleVLrglaetleekvpaivlev 142
                 +  ++ l iDvEG++ +VL g  ++l+++v+++ +e+
  MMETSP1061-20121228|3255_1 396 PRTIHHLSIDVEGFDGDVLLGGGTELLQRVEYLEFEY 432
                 5678899*************************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1774.18
//
Query:       MMETSP1061-20121228|3257_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.21s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 994.99
//
Query:       MMETSP1061-20121228|3259_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-27   91.9   0.0    9.6e-27   91.2   0.0    1.4  1  TIGR02058 lin0512_fam: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02058  lin0512_fam: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   2.3e-30   9.6e-27       2     117 .]     130     258 ..     129     258 .. 0.84

  Alignments for each domain:
  == domain 1    score: 91.2 bits;  conditional E-value: 2.3e-30
   TIGR02058   2 llfiemGlGvdqhG..qe...itkaaaravrnaiasnslPgireslpdssleemkvevklavPldldk.......ldedkvkailPyGkvs.vevvdGGlvvssgilleekedkndemyivn.aavevgy 117
                 l+f+++G+GvdqhG  q+    tkaa ravrnai  ns+Pg+ + +p++  + m ++v+l+vP + ++       +d  +v +++PyGk   +evv GGl  +sg+++ee++d++d++ +   a+v +gy
  MMETSP1061-20121228|3259_1 130 LFFVQLGFGVDQHGdrQNdgfATKAAVRAVRNAIEFNSIPGVIDHIPGGR-KGMLIHVRLGVPPPSNRpgealasVDALEVAKVFPYGKLLpIEVVVGGLEFHSGRVVEELGDDDDDVGVCCvACVSIGY 258
                 689***********44445556*************************987.679********97653222222228999**********999************************99876515577776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1816.42
//
Query:       MMETSP1061-20121228|3260_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-75  251.8   0.0    2.6e-75  251.4   0.0    1.0  1  TIGR03966 actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
    1.9e-65  219.1   0.0    5.5e-37  125.4   0.0    2.0  2  TIGR02708 L_lactate_ox: L-lactate oxidase
    8.4e-13   45.8   0.0    5.9e-12   43.0   0.0    2.0  2  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
    2.3e-06   25.0   0.3    3.7e-06   24.2   0.2    1.3  1  TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein
    1.3e-05   22.1   0.3    1.8e-05   21.6   0.2    1.1  1  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
     0.0055   13.8   0.1     0.0083   13.3   0.1    1.2  1  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
     0.0064   13.4   0.2      0.018   11.9   0.0    1.7  2  TIGR01305 GMP_reduct_1: guanosine monophosphate reductase


Domain annotation for each model (and alignments):
>> TIGR03966  actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.4   0.0   4.4e-78   2.6e-75      11     375 ..      40     401 ..      29     406 .. 0.90

  Alignments for each domain:
  == domain 1    score: 251.4 bits;  conditional E-value: 4.4e-78
   TIGR03966  11 aqrrakkrlpksvykaliagsekGvtladnvaafaelglaprvv.dakakrelsttvlGqeislpvlispt.Gvqavdpdgevavaraaaargtalglssfaskpveevvaand.kvffqlywvGsrdeilarleraraaGakGliltld..wsfasrrdwgs.peipekldlktllklapevlarprwllrylrsgklpdltvpnlaakgeeaptffgaygewmqtplptwedvawlreqwgGpfllkGvlrvddarravdvGvtaisvsnhGGnnldgtpaairalpaiaeavGdqvevlldGGirrGsdvvkalalGaravliGraylwGlaanGeaGvenvldilrsGideallGlgkasvhelsre 375
                  +  ak r  k v++ l ag++  ++l+   +a++el+++ ++  ++k+  +l t+v+G ++ lp +  pt G +  + +ge a a+aa   gt  glss+a+  +++++++++   +fqly   +r+ +++++++a++ G   l lt+d  w  + +rd     +ip k  + ++++    ++++p+w + +l ++      + n ++    +     a+++   +p  +w+d +wl  +w+Gp   kGv r++da++av++G ++i vsnhG  +l++ pa+i +lp+i eavG +ve++ldGG++rG+d++kalalGa +v +G+ ylwGlaa+GeaGv++  dil+  +d a+  lg   v +l++e
  MMETSP1061-20121228|3260_1  40 LRLIAKSRSHKMVFDYLDAGADDEISLRRGKDAYSELEMHFKILsGLKPPLDLRTKVFGMDVDLPFFGCPTaGNRMFHWEGETAAAKAAEKFGTLYGLSSLATTGIDDIAKIHSgPKVFQLYVWKDRELVKDVIAKAKEGGFGALALTVDftWYGNRERDIRNdFSIPPKYSVPQMIE----AVRKPAWTYDFLSHEP-YTYACINTEV----PADSLAAFVNSQIAPEFNWKDAEWLLGEWNGPAAPKGVCRPEDAQKAVEIGFSTIWVSNHGARQLETSPATIDVLPSIREAVGPDVEIILDGGVQRGTDIAKALALGADSVGVGKPYLWGLAAGGEAGVSKAYDILKVELDRAMGLLGTGTVDQLKKE 401
                 334599**********************************9986267899*******************98578999*********************************998634789***********************999999993344567788755168*******99995....799*********9983.3344445444....44556677777889*********************************************************************************************************************************9999*9999999886 PP

>> TIGR02708  L_lactate_ox: L-lactate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.0   1.7e-29     1e-26      12     186 ..      33     207 ..      23     224 .. 0.94
   2 !  125.4   0.0   9.3e-40   5.5e-37     218     355 ..     263     400 ..     246     403 .. 0.93

  Alignments for each domain:
  == domain 1    score: 91.6 bits;  conditional E-value: 1.7e-29
   TIGR02708  12 dvintydleeeaqkvipkgafgyiasaagdtftlrenirafkhkllvprllkdvenp.steielageklksplilapvaahklaneqkevataravkefgsiytissystadleeisealngtprwfqlylskddginrdildrvkaegakaivltadatvggnrevdkrnkfvfp 186
                   +n+ dl   a+    k  f+y+ ++a+d+ +lr    a+    +  + l +++ p +  +++ g  +  p+   p a  ++ + ++e+a+a+a ++fg++y +ss +t+ +++i++ ++ +p+ fqly+ kd ++ +d++ ++k  g  a+ lt d t  gnre+d rn+f  p
  MMETSP1061-20121228|3260_1  33 KAVNIADLRLIAKSRSHKMVFDYLDAGADDEISLRRGKDAYSELEMHFKILSGLKPPlDLRTKVFGMDVDLPFFGCPTAGNRMFHWEGETAAAKAAEKFGTLYGLSSLATTGIDDIAK-IHSGPKVFQLYVWKDRELVKDVIAKAKEGGFGALALTVDFTWYGNRERDIRNDFSIP 207
                 579****************************************************997789*******************************************************86.7788**************************************************988 PP

  == domain 2    score: 125.4 bits;  conditional E-value: 9.3e-40
   TIGR02708 218 rdieeiaaysglpvyvkgiqcaedaeralkagasgiwvtnhgarqldeapaafdslqevaeavdkrvpivfdsgvrrgehvfkalasgadlvalgrpvlyglalggsvgarqvleklnkelkrvmqlagtqtiedvka 355
                 +d e +      p   kg+  +eda++a++ g s iwv+nhgarql+ +pa++d l+ + eav   v i++d gv+rg  ++kala gad v +g+p l+gla gg  g+ + ++ l+ el r m l gt t++++k+
  MMETSP1061-20121228|3260_1 263 KDAEWLLGEWNGPAAPKGVCRPEDAQKAVEIGFSTIWVSNHGARQLETSPATIDVLPSIREAVGPDVEIILDGGVQRGTDIAKALALGADSVGVGKPYLWGLAAGGEAGVSKAYDILKVELDRAMGLLGTGTVDQLKK 400
                 5666655444558888**********************************************************************************************************************9995 PP

>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0       0.1        60      42      85 ..      90     133 ..      63     143 .. 0.75
   2 !   43.0   0.0     1e-14   5.9e-12     246     332 ..     314     401 ..     302     407 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.1
   TIGR02151  42 idlsteflgkklkaPllisamTGGsee.akkiNrkLaevaeelgi 85 
                 +dl+t+++g +++ P++    T G++   ++     a++ae++g 
  MMETSP1061-20121228|3260_1  90 LDLRTKVFGMDVDLPFF-GCPTAGNRMfHWEGETAAAKAAEKFGT 133
                 79*************98.445555555577777777777777765 PP

  == domain 2    score: 43.0 bits;  conditional E-value: 1e-14
   TIGR02151 246 taasllevrs.aakkleliasGGlrsgldvakalaLGAdlvglarplLkaaekegeeavievlekikeelkvamfllgaknieelkkv 332
                 t + l ++r+ + +++e+i  GG++ g d+akalaLGAd vg+ +p L  +++ ge  v +  + +k el  am llg+ ++++lkk 
  MMETSP1061-20121228|3260_1 314 TIDVLPSIREaVGPDVEIILDGGVQRGTDIAKALALGADSVGVGKPYLWGLAAGGEAGVSKAYDILKVELDRAMGLLGTGTVDQLKKE 401
                 66778888888899***********************************************************************985 PP

>> TIGR01304  IMP_DH_rel_2: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   6.4e-09   3.7e-06     248     295 ..     322     369 ..     313     410 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 6.4e-09
   TIGR01304 248 detGgryvhviadGgietsGdlakaiacGadavvlGsPlaraaeaaGr 295
                  e+ g  v++i dGg++ + d+aka+a Gad+v +G P      a G+
  MMETSP1061-20121228|3260_1 322 REAVGPDVEIILDGGVQRGTDIAKALALGADSVGVGKPYLWGLAAGGE 369
                 5777889*******************************8777777665 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.2   3.1e-08   1.8e-05     323     357 ..     324     358 ..     309     400 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3.1e-08
   TIGR01302 323 aaksgipviADGGirysGdivKalalGadavmlGs 357
                 a    +++i DGG++   di+KalalGad v +G 
  MMETSP1061-20121228|3260_1 324 AVGPDVEIILDGGVQRGTDIAKALALGADSVGVGK 358
                 5556799************************9996 PP

>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   1.4e-05    0.0083     148     195 ..     313     362 ..     297     388 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.4e-05
   TIGR03151 148 ttlalvpqvvdav..siPviaaGGiadgrGlaaalalGaeavqlGtrflv 195
                 +t+ ++p + +av  ++ +i  GG++ g  +a alalGa++v +G  +l 
  MMETSP1061-20121228|3260_1 313 ATIDVLPSIREAVgpDVEIILDGGVQRGTDIAKALALGADSVGVGKPYLW 362
                 5888999999999556889**************************98874 PP

>> TIGR01305  GMP_reduct_1: guanosine monophosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.38   2.2e+02     224     271 ..      89     140 ..      70     147 .. 0.71
   2 !   11.9   0.0     3e-05     0.018     202     242 ..     318     358 ..     293     387 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.38
   TIGR01305 224 pgdv.akafgagadfvmlggllaghees..gge.vveengkklklfygmssd 271
                 p d+ +k fg   d+ ++g   ag       ge    +  +k+  +yg+ss 
  MMETSP1061-20121228|3260_1  89 PLDLrTKVFGMDVDLPFFGCPTAGNRMFhwEGEtAAAKAAEKFGTLYGLSSL 140
                 555435888888888888888888764311344156788999999***9985 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 3e-05
   TIGR01305 202 iecadaahglkghivsdggcttpgdvakafgagadfvmlgg 242
                 +     a g +  i+ dgg+    d+aka++ gad v +g 
  MMETSP1061-20121228|3260_1 318 LPSIREAVGPDVEIILDGGVQRGTDIAKALALGADSVGVGK 358
                 5555667888899************************9884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1673.16
//
Query:       MMETSP1061-20121228|3263_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-22   78.3   0.0    2.3e-22   77.7   0.0    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    8.1e-15   52.1   0.3    1.2e-14   51.5   0.2    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
      0.038   11.5   1.2       0.15    9.5   0.1    2.1  2  TIGR00168 infC: translation initiation factor IF-3


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   1.7e-25   2.3e-22       3      76 ..     244     317 ..     242     355 .. 0.83

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 1.7e-25
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggagg 76 
                 Y++L+vs  As++ ikkAY ++ak+ HPD+n+++++a+e+f e +eAy vLsde+kr++YD++g++  +gg+g+
  MMETSP1061-20121228|3263_1 244 YDLLDVSPAASKSMIKKAYFSKAKDIHPDKNRDDPKAHERFVELHEAYTVLSDEKKRDEYDRWGSSLGRGGNGS 317
                 9***************************************************************9988876554 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.2   8.6e-18   1.2e-14       5      68 ..     244     308 ..     241     332 .. 0.95

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 8.6e-18
   TIGR03835   5 yevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkraryDkyGh 68 
                 y+ L++++ a ++ ikka+   ak  hPD+n++ + a + f e+ ea+ vLs+ kkr++yD++G 
  MMETSP1061-20121228|3263_1 244 YDLLDVSPAASKSMIKKAYFSKAKDIHPDKNRDdPKAHERFVELHEAYTVLSDEKKRDEYDRWGS 308
                 99******************************99*****************************95 PP

>> TIGR00168  infC: translation initiation factor IF-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00011      0.15      20      80 ..     227     288 ..     214     302 .. 0.76
   2 ?    0.2   0.0     0.083   1.1e+02     109     140 ..     576     608 ..     571     624 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00011
   TIGR00168  20 lgivsleealkiAeeaglDLvlisanakpPvckildygkyk.yekekkkkeakKkqkviqvK 80 
                  +  +++ a+++A+ +  DL  +s+ a++ ++k   + k k  + +k++ + k + + +++ 
  MMETSP1061-20121228|3263_1 227 AEAAKRRRAMEVADTKLYDLLDVSPAASKSMIKKAYFSKAKdIHPDKNRDDPKAHERFVELH 288
                 56678899************************999888876234444444445555556555 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.083
   TIGR00168 109 kvKvtvrfrGRelahkelgeevldr.vkekvae 140
                 + K  +r+ G e ++  +ge++l++ + ++++ 
  MMETSP1061-20121228|3263_1 576 NRKRAIRIIGEEFTKLAAGEKLLEDdMVDQLKS 608
                 558899****************97426666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.45
# Mc/sec: 1833.18
//
Query:       MMETSP1061-20121228|3261_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-25   85.6   0.0    1.8e-18   64.2   0.0    2.9  2  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    5.4e-13   46.3   0.0    7.9e-06   22.8   0.0    3.0  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    1.4e-10   38.4   0.0     0.0002   18.1   0.0    3.1  3  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    1.3e-08   32.7   0.1      0.011   13.3   0.1    3.3  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    7.4e-06   22.6   0.0    1.3e-05   21.8   0.0    1.4  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    2.2e-05   21.4   1.3      0.061   10.1   0.0    2.4  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    3.5e-05   20.9   0.0    0.00062   16.8   0.0    2.1  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    7.1e-05   19.6   0.0      0.056   10.1   0.0    3.1  3  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
    8.4e-05   18.9   0.0    0.00012   18.4   0.0    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    9.5e-05   17.8   0.0    0.00013   17.3   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    9.9e-05   19.4   0.0    0.00016   18.7   0.0    1.3  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    0.00013   19.1   0.0     0.0002   18.5   0.0    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00013   18.7   0.0    0.00024   17.9   0.0    1.3  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    0.00022   18.5   0.1    0.00032   18.0   0.1    1.2  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0003   17.4   0.0    0.00043   16.9   0.0    1.1  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0027   14.3   0.3     0.0076   12.8   0.1    1.8  2  TIGR02734 crtI_fam: phytoene desaturase
     0.0033   14.1   0.0      0.005   13.5   0.0    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0061   13.5   0.0     0.0088   13.0   0.0    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
  ------ inclusion threshold ------
      0.013   12.2   0.1      0.021   11.5   0.1    1.3  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.022   11.6   0.1       0.67    6.7   0.0    2.4  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.027   10.9   0.0       0.04   10.3   0.0    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
       0.04   10.4   0.0      0.059    9.9   0.0    1.1  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      0.065    9.8   0.2       0.12    9.0   0.1    1.4  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase


Domain annotation for each model (and alignments):
>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.7e-06   0.00047       1      54 [.      79     131 ..      79     138 .. 0.91
   2 !   64.2   0.0     1e-20   1.8e-18     103     404 ..     206     519 ..     202     528 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.7e-06
   TIGR03219   1 lrvaiiGGGiaGvalalelsksshlnvklfeaapafgevGaGvsfGanavraie 54 
                 l++ai GGG+ G++ a  + k+   +v+++e + +f+  G  + f +na+  ++
  MMETSP1061-20121228|3261_1  79 LKIAIAGGGVGGLTAAYYMLKKG-FDVTVYEKTSEFARFGGPIQFASNALSVLK 131
                 78************999999876.7************************98765 PP

  == domain 2    score: 64.2 bits;  conditional E-value: 1e-20
   TIGR03219 103 hradfldallkklpegiakf...gkkaksiee..qaeevevsfedGteyradlligadGiksalrdyvlegagqaavep..rfsGtsayrGlvdsaelreayraagldehlvdvpqmylgldghiltfpvrkGklinvvafvsdr..sqakptwpsdapwvreaskremldaf....agwgdaarvllelieaptlwalhdlaelpgyv....hGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrrerackvqrtsveaGelyelrdpaveadeeklgellaerfdwlwnhdld 404
                  r d+ + ll+++ +  ++f   g+ ++ +e+  +++ v++s++dG +  ad+l+g dGi sa+r+++ +  g ++++   +    + y G      +    + ++ d       ++y+g +++ +t  v +G++     f   +  ++a   w   a   ++  +++++d      +gw+d +  +l++ +  ++     ++  p +     +G v+l+Gda ham+p  G G  q +eda++l++ l +tk +++  ++l + y++ r  r + vq  s+ a +l      +  + +++lg+  ++ + ++w+  l+
  MMETSP1061-20121228|3261_1 206 DRPDLQEILLDECKQIKPDFiqnGNPVVGYENlgKGNGVSISLADGDTVDADVLVGCDGIWSAVRNQMYDEGGVKSLSKnkKKRQGCDYSGYTV---FAGETVLKTPDY-YETGYKVYIGPQRYFVTSDVGDGRIQWYAFFALPPgtKKAPSGWGGSAREGQSDPEENLVDYIkslhEGWSDEIMNVLDATPPDSVEQRDLYDRSPEFFrswaDGNVVLMGDAIHAMMPNLGQGGCQAIEDAFVLTENLANTKSTEKIEDSLQDFYKK-RILRVSAVQFLSRLASDLIVNAFDTPWSPHDNLGKSWKSYLTFFWKPILQ 519
                 56666666666666655544111555666665225679******************************99877766554114556799999643...333344444444.3445689****************9765544444331033334566555544444444444432333389**********9998887665555566655444449***************************************999988888888875.8899999***9999999876555555666777888888888888876665 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   4.4e-08   7.9e-06       2     171 ..      81     273 ..      80     277 .. 0.69
   2 !   18.7   0.0   7.8e-07   0.00014     259     344 ..     397     479 ..     366     502 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4.4e-08
   TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaaek.............akspafdnRvs..Alsaasiellekigvwdklekkraqpiqkirvsdagskg......................alefdaaevgaeaLgy....vvenkvlqqaLlealqekkn.kvtllapaeveeleresdaveltlsdgetleakLlvgADGanSkvrqaa 171
                 i+I+GgG+ Gl+ A  + +++  +v++ e++ + +             +  +  d R +   +++ + +  +++g+ d l++                                         ++f  +e  a+ +g     v++  +lq+ Ll ++++ k   ++   p+   e+  + + v + l+dg+t+ a++lvg+DG  S+vr+++
  MMETSP1061-20121228|3261_1  81 IAIAGGGVGGLTAAYYMLKKG-FDVTVYEKTSEFArfggpiqfasnalSVLKEIDDRLFdrVMEKFTFTGIRTCGIKDGLRS-----------------DgsfrmtddsldylvnpdapadwFVKFPLKEC-ADLFGLpytgVIDRPDLQEILLDECKQIKPdFIQNGNPVVGYENLGKGNGVSISLADGDTVDADVLVGCDGIWSAVRNQM 273
                 899999999999999999777.999999998766666555555554443333445554422344445555555555555555.................33333444444445555555566888888777.444443334489999**********9987656666777777777778******************************998 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 7.8e-07
   TIGR01988 259 vgeraafPLslthakryvaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaalla 344
                 v++r ++  s +  ++ ++  v+l GdA h + P  GQG    ++D+  L e la+++++ e+i   ++L+ + ++r     a++ 
  MMETSP1061-20121228|3261_1 397 VEQRDLYDRSPEFFRSWADGNVVLMGDAIHAMMPNLGQGGCQAIEDAFVLTENLANTKST-EKIE--DSLQDFYKKRILRVSAVQF 479
                 566677777777778888999**********************************98777.5676..6788888888666555544 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0045       0.8       1      33 [.      80     111 ..      80     132 .. 0.92
   2 !   10.3   0.0   0.00026     0.046     134     169 ..     239     274 ..     195     278 .. 0.67
   3 !   18.1   0.0   1.1e-06    0.0002     257     342 ..     397     482 ..     395     523 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0045
   TIGR01984   1 dviivGgglvGlslAlaLsrksklkialieaks 33 
                 +++i Ggg+ Gl+ A  + +k+ +++++ e++s
  MMETSP1061-20121228|3261_1  80 KIAIAGGGVGGLTAAYYMLKKG-FDVTVYEKTS 111
                 599*******************.******9986 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00026
   TIGR01984 134 rekdeaevkldneqkleakLlvaAdGanskvresls 169
                  + + + + l+++ +++a++lv +dG  s+vr++++
  MMETSP1061-20121228|3261_1 239 GKGNGVSISLADGDTVDADVLVGCDGIWSAVRNQMY 274
                 3445599*************************9875 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 1.1e-06
   TIGR01984 257 vgerkaypLklviaeeqvkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylkerkeDraatigltd 342
                 v++r +y  +  + +   +  vvl+g+a + + P  gQG  + + D++ L e l++ ++     + lq + k+r    +a+ +l++
  MMETSP1061-20121228|3261_1 397 VEQRDLYDRSPEFFRSWADGNVVLMGDAIHAMMPNLGQGGCQAIEDAFVLTENLANTKSTEKIEDSLQDFYKKRILRVSAVQFLSR 482
                 566777777777788888999************************************97777778999999999765444444433 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   5.9e-05     0.011       5      34 ..      83     112 ..      81     125 .. 0.92
   2 !   11.8   0.0   0.00017     0.031      83     155 ..     200     273 ..     140     306 .. 0.78
   3 ?    3.4   0.0     0.064        11     202     282 ..     344     435 ..     338     444 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.9e-05
   TIGR02032   5 vvGaGpaGssaAlrlakkGlrVlllekkel 34 
                 + G+G  G +aA+++ kkG++V + ek+++
  MMETSP1061-20121228|3261_1  83 IAGGGVGGLTAAYYMLKKGFDVTVYEKTSE 112
                 89************************9875 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00017
   TIGR02032  83 eealvidRkefDelLaekAqeagaelllett.vlsveied..ekvkvevredekkevtakivigAdGakskvakkl 155
                 +++ vidR ++ e L+++ ++   ++  +   v+  e  +  + v +++++    +v+a++++g dG  s+v++++
  MMETSP1061-20121228|3261_1 200 PYTGVIDRPDLQEILLDECKQIKPDFIQNGNpVVGYENLGkgNGVSISLAD--GDTVDADVLVGCDGIWSAVRNQM 273
                 5678*****************999988765515554444455666666665..59*****************9976 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.064
   TIGR02032 202 fPkgdgtanvGvgvls.eekedlkkklkeflaerpeklkdaeevevkgal...........iPirradektvtgnvllvGDAAglVkPltGeG 282
                 +P g ++a  G g  + e + d+ ++l +++++  e ++d e+++v  a             +  ++ ++ + gnv+l+GDA     P  G G
  MMETSP1061-20121228|3261_1 344 LPPGTKKAPSGWGGSArEGQSDPEENLVDYIKSLHEGWSD-EIMNVLDATppdsveqrdlyDRSPEFFRSWADGNVVLMGDAIHAMMPNLGQG 435
                 5677777888887777677788888888888888877777.3444333332233111121122334456667889999999999888888877 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   7.6e-08   1.3e-05       4      45 ..      80     122 ..      78     189 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 7.6e-08
   TIGR00562   4 kvvvvGgGisGLciayalekerpdvelvlvEakd...RvGGkiyT 45 
                 k+++ GgG+ GL++ay++ k+  + +++++E+     R GG i+ 
  MMETSP1061-20121228|3261_1  80 KIAIAGGGVGGLTAAYYMLKK--GFDVTVYEKTSefaRFGGPIQF 122
                 789****************99..********98444499**9984 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   0.5       9.3   1.7e+03       3      16 ..      81      94 ..      80      98 .. 0.87
   2 !   10.0   0.0   0.00036     0.065     157     189 ..     241     273 ..     213     283 .. 0.89
   3 !   10.1   0.0   0.00034     0.061     334     371 ..     417     454 ..     409     480 .. 0.84

  Alignments for each domain:
  == domain 1    score: -4.5 bits;  conditional E-value: 9.3
   TIGR01989  3 vvivGgGlvGlalA 16
                ++i+GgG+ Gl+ A
  MMETSP1061-20121228|3261_1 81 IAIAGGGVGGLTAA 94
                79********9977 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00036
   TIGR01989 157 snlvkikledgetlktklliGADGanSkvRkaa 189
                  n v i+l dg+t  +++l+G DG  S vR+++
  MMETSP1061-20121228|3261_1 241 GNGVSISLADGDTVDADVLVGCDGIWSAVRNQM 273
                 57789*************************876 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00034
   TIGR01989 334 rvALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeav 371
                  v L+GDA H + P  GqG    ++D+ +L + la++ 
  MMETSP1061-20121228|3261_1 417 NVVLMGDAIHAMMPNLGQGGCQAIEDAFVLTENLANTK 454
                 689******************************99764 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.5e-06   0.00062       1      33 [.      81     114 ..      81     143 .. 0.75
   2 ?    1.8   0.0      0.13        23     148     208 ..     205     268 ..     197     279 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.5e-06
   TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekd.evg 33 
                 ++++GgGv Gl+ A++++k+g++vt+ ek  e++
  MMETSP1061-20121228|3261_1  81 IAIAGGGVGGLTAAYYMLKKGFDVTVYEKTsEFA 114
                 689*************************986555 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.13
   TIGR02352 148 vdprellkaLvkaleklGveiiee.vevqeiea..rgekvtavktssekvqadqvvlaaGawak 208
                 +d ++l + L++++++   ++i++  +v   e+  +g+ v+    + ++v+ad +v + G+w+ 
  MMETSP1061-20121228|3261_1 205 IDRPDLQEILLDECKQIKPDFIQNgNPVVGYENlgKGNGVSISLADGDTVDADVLVGCDGIWSA 268
                 6777777777777777777665531444444441122223344456679*************96 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.036       6.5       4      35 ..      80     111 ..      78     117 .. 0.93
   2 ?    2.1   0.0     0.084        15     148     169 ..     252     273 ..     207     281 .. 0.72
   3 !   10.1   0.0   0.00031     0.056     279     345 ..     416     483 ..     410     498 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.036
   TIGR02360   4 qvaiigaGpsGlllgqllhkaGidavilerks 35 
                 ++ai g+G  Gl  +  + k+G d+ + e+ s
  MMETSP1061-20121228|3261_1  80 KIAIAGGGVGGLTAAYYMLKKGFDVTVYEKTS 111
                 89***************************987 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.084
   TIGR02360 148 krldcdfiaGcdGfhGvsrksi 169
                  ++d d ++GcdG     r+ +
  MMETSP1061-20121228|3261_1 252 DTVDADVLVGCDGIWSAVRNQM 273
                 579**********999888765 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.00031
   TIGR02360 279 GrlflaGdaahivpptGakGlnlaasdvaylyeallea.ykekdsaglerysakalarvwkaerfsww 345
                 G + l Gda h + p   +G   a+ d  +l e l ++  +ek +++l+ + +k + rv   + +s  
  MMETSP1061-20121228|3261_1 416 GNVVLMGDAIHAMMPNLGQGGCQAIEDAFVLTENLANTkSTEKIEDSLQDFYKKRILRVSAVQFLSRL 483
                 8899********999999999*************9876157888999999999999999877766655 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.7e-07   0.00012     375     424 ..      74     126 ..      64     158 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.7e-07
   TIGR03997 375 karrrkkvlvvGgGPaGleaaataarrGhrvtlleree...elGGqvklaakl 424
                 +++r+ k+ ++GgG +Gl+aa    ++G +vt++e+ +   + GG +++a+++
  MMETSP1061-20121228|3261_1  74 RPGRPLKIAIAGGGVGGLTAAYYMLKKGFDVTVYEKTSefaRFGGPIQFASNA 126
                 5778899*****************************97222579*99999864 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.5e-07   0.00013     538     571 ..      79     112 ..      49     126 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 7.5e-07
   TIGR03315 538 hkvaviGaGPaGlsagyflaraGlpvtvfekkek 571
                  k+a+ G+G  Gl+a+y++ ++G +vtv+ek ++
  MMETSP1061-20121228|3261_1  79 LKIAIAGGGVGGLTAAYYMLKKGFDVTVYEKTSE 112
                 58****************************9865 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   8.9e-07   0.00016       1      36 [.      80     115 ..      80     125 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 8.9e-07
   TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaq 36 
                 k+a+ G+G+ g+++a+ + ++G+ vt++ek ++ a+
  MMETSP1061-20121228|3261_1  80 KIAIAGGGVGGLTAAYYMLKKGFDVTVYEKTSEFAR 115
                 69****************************999885 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.1e-06    0.0002      24      55 ..      81     112 ..      78     137 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.1e-06
   TIGR00292  24 viivGaGpsGLtaayylakeglkvvvlerkla 55 
                 ++i+G+G  GLtaayy+ k+g+ v v e+   
  MMETSP1061-20121228|3261_1  81 IAIAGGGVGGLTAAYYMLKKGFDVTVYEKTSE 112
                 789*************************8643 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.3e-06   0.00024     144     203 ..      79     141 ..      71     159 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.3e-06
   TIGR01317 144 kkvavvGsGPaGlaaadqlnraGhtvtvfered...rvGGllryGiPnlkldkeiverridll 203
                  k+a+ G G  Gl+aa  + + G +vtv+e+     r GG +++    l + kei +r  d +
  MMETSP1061-20121228|3261_1  79 LKIAIAGGGVGGLTAAYYMLKKGFDVTVYEKTSefaRFGGPIQFASNALSVLKEIDDRLFDRV 141
                 489***************************98444499*****99999888887766665544 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.8e-06   0.00032       1      31 [.      81     111 ..      81     124 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.8e-06
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarr 31 
                 +++ GgG+ GL+AA  + ++G++vt++E   
  MMETSP1061-20121228|3261_1  81 IAIAGGGVGGLTAAYYMLKKGFDVTVYEKTS 111
                 589*************************875 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.4e-06   0.00043       3      34 ..      80     111 ..      78     120 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.4e-06
   TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaaa 34 
                 ++ + G+G++Gltaa  + k+G++vt++e+ +
  MMETSP1061-20121228|3261_1  80 KIAIAGGGVGGLTAAYYMLKKGFDVTVYEKTS 111
                 68899************************875 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   4.3e-05    0.0076       3      32 ..      83     112 ..      81     121 .. 0.89
   2 ?   -2.9   0.0       2.5   4.4e+02      42      64 ..     294     316 ..     286     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.3e-05
   TIGR02734   3 ViGaGlgGLAlAirLaaaGievtvlekrdk 32 
                 + G+G+gGL +A  + ++G +vtv ek ++
  MMETSP1061-20121228|3261_1  83 IAGGGVGGLTAAYYMLKKGFDVTVYEKTSE 112
                 67************************9876 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.5
   TIGR02734  42 edGfrfDtGPtvitmPealeelf 64 
                  +G+++ +G tv+  P+ +e  +
  MMETSP1061-20121228|3261_1 294 YSGYTVFAGETVLKTPDYYETGY 316
                 57***************999766 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.8e-05     0.005     130     165 ..      75     110 ..      67     149 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.8e-05
   TIGR01316 130 pstkkkvaviGaGpaGlavaselakkGhevtvfeal 165
                 p+   k+a+ G G  Gl+ a  + kkG++vtv+e  
  MMETSP1061-20121228|3261_1  75 PGRPLKIAIAGGGVGGLTAAYYMLKKGFDVTVYEKT 110
                 566689***************************964 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.9e-05    0.0088       3      34 ..      81     112 ..      79     116 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.9e-05
   TIGR03364   3 vvvvGaGivGlahAlaaarrGlkVtvierssr 34 
                 +++ G+G+ Gl  A+   ++G+ Vtv e++s+
  MMETSP1061-20121228|3261_1  81 IAIAGGGVGGLTAAYYMLKKGFDVTVYEKTSE 112
                 899*************************9986 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00012     0.021       1      34 [.      81     114 ..      81     115 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
   TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkkig 34 
                 ++i GgG  Gl+aA  + ++g +V+++Ek+++++
  MMETSP1061-20121228|3261_1  81 IAIAGGGVGGLTAAYYMLKKGFDVTVYEKTSEFA 114
                 6899**************************9987 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0037      0.67       2      43 ..      80     120 ..      79     160 .. 0.88
   2 ?   -2.8   0.0         3   5.3e+02     140     159 ..     252     271 ..     247     277 .. 0.83
   3 ?    2.0   0.0       0.1        18     259     303 ..     411     455 ..     406     483 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0037
   TIGR02023   2 dvlviGggpsGaaaaetLakagievillerelarikPCGGai 43 
                 ++++ Ggg++G +aa  + k+g +v + e+  ++    GG i
  MMETSP1061-20121228|3261_1  80 KIAIAGGGVGGLTAAYYMLKKGFDVTVYEKT-SEFARFGGPI 120
                 689**************************98.7777777766 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3
   TIGR02023 140 ksveadvviGaDGakskvak 159
                  +v adv +G DG  s v +
  MMETSP1061-20121228|3261_1 252 DTVDADVLVGCDGIWSAVRN 271
                 57999********9999875 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.1
   TIGR02023 259 krldservvLvGDaaGlvakasGeGiyyamksGklaaeaivealk 303
                 ++++++ vvL+GDa   + +  G G   a++   +  e ++++ +
  MMETSP1061-20121228|3261_1 411 RSWADGNVVLMGDAIHAMMPNLGQGGCQAIEDAFVLTENLANTKS 455
                 6899*****************999988888776666666655444 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00023      0.04     143     192 ..      80     132 ..      73     152 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00023
   TIGR01318 143 rvaviGaGpaGlacadvlaraGvkvvvfdrype...iGGlltfGipsfkldka 192
                 ++a+ G+G  Gl+ a  + + G +v+v+++  e    GG ++f   ++ + k+
  MMETSP1061-20121228|3261_1  80 KIAIAGGGVGGLTAAYYMLKKGFDVTVYEKTSEfarFGGPIQFASNALSVLKE 132
                 89**************************9865522278989988777665554 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00033     0.059     169     203 ..      77     111 ..      43     117 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00033
   TIGR01350 169 vpeslvivGgGviGvEfasifaklGvkvtvielld 203
                  p +++i GgGv G+  a+ + k G +vtv e ++
  MMETSP1061-20121228|3261_1  77 RPLKIAIAGGGVGGLTAAYYMLKKGFDVTVYEKTS 111
                 46789999999999999999999999999998765 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00066      0.12       2      33 ..      80     111 ..      79     121 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00066
   TIGR01292   2 dviiiGaGpaGltaaiYaaranlktlliegke 33 
                 +++i G+G +Gltaa Y  ++++++ ++e+++
  MMETSP1061-20121228|3261_1  80 KIAIAGGGVGGLTAAYYMLKKGFDVTVYEKTS 111
                 689*********************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.72
# Mc/sec: 1103.58
//
Query:       MMETSP1061-20121228|3265_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.6   0.0     0.0016   16.1   0.0    1.9  1  TIGR03684 arCOG00985: arCOG04150 universal archaeal PUA-domain protein
    0.00027   18.0   0.0     0.0004   17.4   0.0    1.2  1  TIGR00425 CBF5: putative rRNA pseudouridine synthase
     0.0055   14.8   0.0     0.0081   14.2   0.0    1.3  1  TIGR00451 unchar_dom_2: uncharacterized domain 2


Domain annotation for each model (and alignments):
>> TIGR03684  arCOG00985: arCOG04150 universal archaeal PUA-domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.2e-06    0.0016       3     150 ..       3     172 ..       1     175 [. 0.74

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.2e-06
   TIGR03684   3 alskkelkelleeleeslg..ekaielekkkvevaetkkkeiilvdgkpllfev...deeliptlklllelklek.................kvvvVDeGAvkfiinGAdvmapGivevdeeikegdivvvveekhrkplavgvalmdaeeiv.eekkGkavknlhhvgDk 150
                  l ++e k l+ +l+e++g  ++++++++++    ++ k+ +++v++ ++   +    + l+    ++ ++ ++                  ++v V + A    + G ++ ++G   ++e+  +   vvv + + + p+  gva  + e+    e++G +v +   +gD 
  MMETSP1061-20121228|3265_1   3 PLTEDETKTLFLKLSEYIGknVEKLINRNDERYCFRLMKDRCYYVSESLMKAATsisRDSLLHVGTCIGKFTKSGkfrlhvtaleylaryakHKVWVKQSAEMSFLYGNHITKQGLARMTESTPQYAGVVVFNMN-DIPMGFGVAAQSTEHCQsLEASGNVVLHQADIGDY 172
                 577777888888888888755344444444444777777778888777765554454344444445555555555566666667777777779*****************************************9.***********999988446679999888888875 PP

>> TIGR00425  CBF5: putative rRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.9e-07    0.0004     224     300 ..      80     157 ..      70     169 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.9e-07
   TIGR00425 224 revikPlevalaelk.rvvvkdsavdaicyGadlavrGlakledgiekedtvvvitlkgeavavgkalmstkdiaaad 300
                 r  ++ le++++  k +v vk sa  +  yG +++ +Gla++ ++  ++  vvv+ + +  ++ g a  st++ ++++
  MMETSP1061-20121228|3265_1  80 RLHVTALEYLARYAKhKVWVKQSAEMSFLYGNHITKQGLARMTESTPQYAGVVVFNMNDIPMGFGVAAQSTEHCQSLE 157
                 6678889998876543899************************************************99999887765 PP

>> TIGR00451  unchar_dom_2: uncharacterized domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     6e-06    0.0081      11     101 ..      74     165 ..      66     171 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6e-06
   TIGR00451  11 kkfdkvilslkgakklkee.kklvkvdegavkFllngadvlkPGiveadedikekdvvvvvdenkdralavGialvsgeeikeve.kGkavkv 101
                 +k +k+ l++  +  l    k+ v v++ a    l g  + k G+  ++e  ++   vvv + n d +++ G+a  s+e  ++ e +G++v  
  MMETSP1061-20121228|3265_1  74 TKSGKFRLHVTALEYLARYaKHKVWVKQSAEMSFLYGNHITKQGLARMTESTPQYAGVVVFNMN-DIPMGFGVAAQSTEHCQSLEaSGNVVLH 165
                 5566677777766666543499999*999977667799********************999998.***************9998735777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 955.60
//
Query:       MMETSP1061-20121228|3264_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1702.66
//
Query:       MMETSP1061-20121228|3267_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 757.50
//
Query:       MMETSP1061-20121228|3266_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-06   23.2   0.0      2e-05   21.5   0.0    1.7  1  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
  ------ inclusion threshold ------
      0.019   11.4   0.0       0.23    7.9   0.0    2.0  2  TIGR01137 cysta_beta: cystathionine beta-synthase


Domain annotation for each model (and alignments):
>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   9.9e-09     2e-05      77     198 ..     146     283 ..     121     295 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 9.9e-09
   TIGR01302  77 kkvKraeegvisdpvtvsPettvedvlelkekkgisgvpvvedgkeeg..klvGivtkkdlrfv.....kdkskk........vsevmt.keevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdiek 198
                 ++v +a++ +     ++s ++tv+++     + g+sg++vve + +++  ++vG++t++dl  +     k+++++        v ++mt  ++vi ++ + ++    +++ +  i+ lp++ +++++ gl+t++d++ 
  MMETSP1061-20121228|3266_1 146 REVLNAKHSFRWLNPIISENATVREAIPAVIEGGLSGMMVVEGDGDDTnkRVVGLLTSRDLLRMiaaglKEEGTSeseifeqvVGNFMTpISQVIYARPSETIGMCRSLMAKLAIKCLPILSDDSKVEGLITARDMND 283
                 555555555555455677889999999999999******998655444469*******99854312222333222334444558899**999*******************************************974 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00011      0.23     351     423 ..     162     249 ..     123     284 .. 0.66
   2 ?    2.9   0.0    0.0036       7.5     345     391 ..     236     282 ..     216     305 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00011
   TIGR01137 351 vketetvadaieilrekGfdqlPvvk.....eagkvlgsvtlrellsallakkakledavkkkls...........kklkkidegekls 423
                 ++e++tv++ai  + e G++ + vv+      +++v+g+ t r+ll+ ++a+  k+e + + +++           ++ +  + +e+++
  MMETSP1061-20121228|3266_1 162 ISENATVREAIPAVIEGGLSGMMVVEgdgddTNKRVVGLLTSRDLLRMIAAGL-KEEGTSESEIFeqvvgnfmtpiSQVIYARPSETIG 249
                 578999*******************9999888899***********9776653.33333333333222234444444444444455554 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0036
   TIGR01137 345 lkalvtvketetvadaieilrekGfdqlPvvkeagkvlgsvtlrell 391
                 +++++  +++et++    ++ +  ++ lP+++ ++kv g++t r++ 
  MMETSP1061-20121228|3266_1 236 ISQVIYARPSETIGMCRSLMAKLAIKCLPILSDDSKVEGLITARDMN 282
                 7899999***********************************99885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.53
# Mc/sec: 1713.37
//
Query:       MMETSP1061-20121228|3270_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   13.1   0.1      0.086   11.6   0.0    1.7  1  TIGR01870 cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2


Domain annotation for each model (and alignments):
>> TIGR01870  cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.1e-05     0.086       4      45 ..     234     275 ..     232     287 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.1e-05
   TIGR01870   4 tqlRklydelrkieekirrsekkneeivaelellkvklaYav 45 
                  q+Rkly  + + ++k +++e+++ ++ ++l++ +vk a+++
  MMETSP1061-20121228|3270_1 234 KQIRKLYRTTSSSNSKNNTEEGRSSSVHRKLSMTRVKDAWNT 275
                 6***************9999****************988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.52
# Mc/sec: 1380.81
//
Query:       MMETSP1061-20121228|3269_1  [L=673]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.7e-109  362.9   1.3    4.2e-78  261.2   0.8    2.2  2  TIGR00657 asp_kinases: aspartate kinase
   5.6e-104  346.2   0.7    3.7e-75  251.3   0.9    2.1  2  TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class
    7.3e-25   85.8   0.0      4e-20   70.3   0.0    3.1  3  TIGR02078 AspKin_pair: putative Pyrococcus aspartate kinase subunit
    0.00019   18.9   0.0    0.00047   17.6   0.0    1.6  1  TIGR02075 pyrH_bact: UMP kinase


Domain annotation for each model (and alignments):
>> TIGR00657  asp_kinases: aspartate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   4.7e-32   4.8e-29       4     165 ..     133     325 ..     130     333 .. 0.90
   2 !  261.2   0.8   4.1e-81   4.2e-78     154     442 .]     356     643 ..     344     643 .. 0.93

  Alignments for each domain:
  == domain 1    score: 99.5 bits;  conditional E-value: 4.7e-32
   TIGR00657   4 iVqKFGGtSvgnverikkvakivkkekekg.nqvvVVvSAmagvTdaLvelaekvsseeekeliekirekhlealeela.sqalkeklkallekeleevkk................................ereldlilsvGEklSaallaaaleelgvkavsllgaeagiltdsefgrAkvleeikterlekl 165
                  V KFGG+S++n++ri++va+++k + + g  + +VV+SAm+++T++L++  e + +++    +e+ir+ h eal+++     +   ++++ e + e+  +                                +r+ld+++s+GE+ S++++a+ l++ gvka++l +++agiltd++fg+A+ l e++ + + ++
  MMETSP1061-20121228|3269_1 133 CVFKFGGSSLANADRIDHVAHLIKDQIAAGfVPRAVVCSAMGKTTNNLLSAGELALDGN--VSVETIRQLHTEALDTFGiGGDSDSDSEDDSEDNSENDSStsssslvraevesllaeceqmlsgvsllkelsPRSLDRLVSYGERCSVRIVAERLNQIGVKAIHLDAWDAGILTDDQFGDAR-LLEASPDAVREA 325
                 699************************99934779************************..689*************9987777777777777666665557899******************************************************************************.777777666655 PP

  == domain 2    score: 261.2 bits;  conditional E-value: 4.1e-81
   TIGR00657 154 leeikterleklleegiivvvaGFiGat.ekgeittLGRGGSDltAallAaalkAdeveiytDVdGiytaDPrivpeArrldeisyeEalELaslGakvLhprtlepamrakipivvkstfnpeaeGTlivakskseeepavkalsldknqalvsvsgttmk..pgilaevfgalaeakvnvdlilqsssetsisfvvdkedadkakellkkkvkeekaleevevekklalvslvGagmksapgvaakifeaLaeeniniemis..sseikisvvvdekdaekavealheklve 442
                 +e++++++ ++  + +++ vv+GF+G + ++g ittLGRGGSDltA++l+aal+ dev++++DVdGi++aDPr+vp A  ld +s+eEa+ELa++Ga+vLhp +++pam+a++p++vk+++np+a GTli  +++ eee  v+a++++k  +++++++t+m   +g+la+vf a a++k +vd+++  sse s+s+++dk++ ++  ++l+   +++ + ++v+ +++ ++ +l+  +++    v+a++f++ a+eni +em+s  +s ++is++v+ +  e+a+  lh +++e
  MMETSP1061-20121228|3269_1 356 KENTNNKKENENENTNVVAVVTGFLGKNpSTGCITTLGRGGSDLTATALGAALGVDEVQVWKDVDGILSADPRVVPGAMPLDRVSFEEASELAYFGAQVLHPIAMQPAMQASVPVRVKNSYNPSAVGTLIQHERS-EEERLVTAITYKKGVTVLDIASTQMLgaYGFLARVFDAFATHKLSVDVLA--SSEVSVSLTLDKKQEQTSIAALQ---QDLGDCSTVNRKDDRSILTLILPDIARSSEVLATAFSVFAKENIVVEMMSqgASKVNISFIVKTECLERAMTRLHFCFFE 643
                 233333333334444499**********8899*****************************************************************************************************88.666**********************************************9..88899*********999999985...699************************************************************************99985 PP

>> TIGR00656  asp_kin_monofn: aspartate kinase, monofunctional class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.4   0.0   6.2e-30   6.4e-27       4     125 ..     133     320 ..     130     336 .. 0.83
   2 !  251.3   0.9   3.6e-78   3.7e-75     130     406 ..     366     643 ..     344     644 .. 0.92

  Alignments for each domain:
  == domain 1    score: 92.4 bits;  conditional E-value: 6.2e-30
   TIGR00656   4 iVqKFGGtsvgsserikkaakivlkelkegkk.vvVVvSAmskvtdelvelae...........llklleaisdei.............................................................sprerdelvsvGEllssallssalrelgvkaealdgkeagilTddefgnAkikelate 125
                  V KFGG+s+++ +ri ++a+++++++  g   + VV SAm+k+t++l++  e           +++l                                                                     spr+ d+lvs+GE+ s++++++ l++ gvka+ ld ++agilTdd+fg+A+  e++++
  MMETSP1061-20121228|3269_1 133 CVFKFGGSSLANADRIDHVAHLIKDQIAAGFVpRAVVCSAMGKTTNNLLSAGElaldgnvsvetIRQL-------HtealdtfgiggdsdsdseddsednsendsstsssslvraevesllaeceqmlsgvsllkelSPRSLDRLVSYGERCSVRIVAERLNQIGVKAIHLDAWDAGILTDDQFGDARLLEASPD 320
                 599***************************86368999**************9666666654442222.......03333444555555555556666777778888899999999999999999999************************************************************9998775 PP

  == domain 2    score: 251.3 bits;  conditional E-value: 3.6e-78
   TIGR00656 130 elLeegiivvvaGFiGate.eGeiTtLGRGGSDltAallaaalkAdrveiyTDVeGvyttDPrvveeakkidkisyeEalelAtlGakvlhpralelaveakvpilvrsskeke.egTlitn.kkensslvkaialeknvarltvegegmlgkrgilaeifkaLaeeeinvdlisqtesetsislvvdeedvdeakkaLkeesgaaelesleveedlavvsivgaglveapGvaseifkaleekninilmis..ssetkisvlvdekdaekavrklheklee 406
                 e  + +++ vv+GF+G++   G iTtLGRGGSDltA++l+aal  d+v+++ DV+G++++DPrvv+ a ++d++s+eEa elA++Ga+vlhp a+++a++a+vp++v++s++++  gTli + ++e+++lv+ai+++k+v++l + +++mlg +g+la++f a+a ++++vd++  +e  +s+sl++d+++ +++ +aL++     + + ++ + d  +++++  ++   + v++ +f++ +++ni + m+s  +s+++is++v+++ +e+a+  lh  ++e
  MMETSP1061-20121228|3269_1 366 ENENTNVVAVVTGFLGKNPsTGCITTLGRGGSDLTATALGAALGVDEVQVWKDVDGILSADPRVVPGAMPLDRVSFEEASELAYFGAQVLHPIAMQPAMQASVPVRVKNSYNPSaVGTLIQHeRSEEERLVTAITYKKGVTVLDIASTQMLGAYGFLARVFDAFATHKLSVDVLASSE--VSVSLTLDKKQEQTSIAALQQDL--GDCSTVNRKDDRSILTLILPDIARSSEVLATAFSVFAKENIVVEMMSqgASKVNISFIVKTECLERAMTRLHFCFFE 643
                 455678999*******986379********************************************************************************************99****995666669*********************************************9888..*******************9996..5567999999******************************9876666559**********************88765 PP

>> TIGR02078  AspKin_pair: putative Pyrococcus aspartate kinase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0054       5.5       3      67 ..     134     204 ..     132     229 .. 0.69
   2 !    7.6   0.0   0.00044      0.45      93     138 ..     264     314 ..     238     332 .. 0.74
   3 !   70.3   0.0   3.9e-23     4e-20     151     290 ..     365     510 ..     349     519 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0054
   TIGR02078   3 vvkfGGssvryd..feeavelvkslsee..kevvvvvsalkGvtdllikyan.tldkkalvk.ieeiyvef 67 
                 v kfGGss+ ++   ++  +l+k          +vv sa+   t+ l+   + +ld ++ v+ i + + e 
  MMETSP1061-20121228|3269_1 134 VFKFGGSSLANAdrIDHVAHLIKDQIAAgfVPRAVVCSAMGKTTNNLLSAGElALDGNVSVEtIRQLHTEA 204
                 89*******9863356667777765544114558999**99999999877653567666554255566655 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00044
   TIGR02078  93 eealrdeilslGellsaklfae.....kiegkvvdsldl.lvakGefGnafi 138
                 + +  d ++s Ge+ s +++ae     ++++  +d++d  + ++ +fG+a +
  MMETSP1061-20121228|3269_1 264 PRS-LDRLVSYGERCSVRIVAErlnqiGVKAIHLDAWDAgILTDDQFGDARL 314
                 444.499***************999777777788999974567889999975 PP

  == domain 3    score: 70.3 bits;  conditional E-value: 3.9e-23
   TIGR02078 151 yevlesGviPvipGfvgn..lnGyrvtlGrGGsdysavalavllnsklvlimsdveGiftadPklvPsarlipylsyeeiliaaklGmkalqwkavelvkekkilvlfGktkd.wklGtlvsnkssk....lPllvykdgellvvnv 290
                  e  +  v+ v++Gf+g     G + tlGrGGsd +a+al+  l    v +  dv+Gi +adP++vP a  +  +s+ee+   a +G + l+  a++++ + +++v +  + +   +Gtl+ +++s+    +  ++yk+g + v+++
  MMETSP1061-20121228|3269_1 365 NENENTNVVAVVTGFLGKnpSTGCITTLGRGGSDLTATALGAALGVDEVQVWKDVDGILSADPRVVPGAMPLDRVSFEEASELAYFGAQVLHPIAMQPAMQASVPVRVKNSYNpSAVGTLIQHERSEeerlVTAITYKKG-VTVLDI 510
                 555567899*******973357************************************************************************************99887663689****9988753333566788888.777665 PP

>> TIGR02075  pyrH_bact: UMP kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   4.6e-07   0.00047     138     226 ..     398     488 ..     354     496 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 4.6e-07
   TIGR02075 138 DtaaalraieieadvilkgkkgvdGvysaDPkknkdakkyekltydevlkk...elkvmDltAlalakdnklpivvfnikeegalkkviegk 226
                 D +a+  ++ + +d + + k+ vdG+ saDP+  + a  +++++++e+ +    + +v+   A+  a++  +p++v n  +++a+ + i+++
  MMETSP1061-20121228|3269_1 398 DLTATALGAALGVDEVQVWKD-VDGILSADPRVVPGAMPLDRVSFEEASELayfGAQVLHPIAMQPAMQASVPVRVKNSYNPSAVGTLIQHE 488
                 666777777888899888888.************************98664222679*******************9999999988888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       490  (0.119454); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.13s 00:00:00.62 Elapsed: 00:00:00.56
# Mc/sec: 1586.23
//
Query:       MMETSP1061-20121228|3271_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1732.36
//
Query:       MMETSP1061-20121228|3268_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00022   18.0   3.6       0.05   10.2   2.1    2.3  2  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1    0.0001      0.43      47     157 ..      50     160 ..      18     195 .. 0.64
   2 !   10.2   2.1   1.2e-05      0.05     243     280 ..     191     231 ..     142     259 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0001
   TIGR01932  47 vyeaGLhvkiPliesvkildakiqtvDgeadrivtkekkdlivdtyikWri..eDfkkyYlatgggnisaAevlikrkiedrlRseigklelkeivrssrd..eqldtleakeal 157
                 v   G h+ iP+i++  i+d + +   + +    tk+ + + +   + Wr   +++ + Y  +g       e  + ++ +++l+s++++++  e++++  +  e++  + +k a 
  MMETSP1061-20121228|3268_1  50 VSGEGTHFLIPVIQRPIIFDIRTKPR-EIPSVTGTKDLQMVNIKLRVLWRPteSELPQIYRELG---TDFDERVLPSIGNEVLKSIVAQYNAVELLSKRAEvsERIRNEMSKRAK 160
                 44678899999999999998665433.3344456799999999999999962256788899888...445566777777888888888888888877665544455444444443 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 1.2e-05
   TIGR01932 243 kaekEvvk.iL..seAereariikgegdaeaAklysdaysk 280
                 + e E+++ ++  +e er+a ++++eg+aeaA + ++a ++
  MMETSP1061-20121228|3268_1 191 SQEAERQQwVVkkAEQERQAMVTRAEGEAEAATIITQAMER 231
                 33444443233125567899999***********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 1094.73
//
Query:       MMETSP1061-20121228|3272_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 1546.64
//
Query:       MMETSP1061-20121228|3274_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   23.1   3.6     0.0024   15.5   0.4    2.5  3  TIGR00336 pyrE: orotate phosphoribosyltransferase
    0.00068   17.0   0.7       0.98    6.7   0.0    2.9  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
     0.0016   15.3   6.7      0.002   15.1   4.7    1.3  1  TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
     0.0025   15.0   2.4       0.17    9.1   0.7    2.9  4  TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit
     0.0061   14.8   1.2       0.26    9.6   0.0    3.1  4  TIGR01321 TrpR: trp operon repressor


Domain annotation for each model (and alignments):
>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.4   2.9e-06    0.0024     102     166 ..      14      78 ..       3      81 .. 0.83
   2 !   11.8   0.3   3.9e-05     0.032     103     164 ..      65     126 ..      56     133 .. 0.79
   3 !    4.8   0.1    0.0056       4.6     106     152 ..      93     135 ..      87     151 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.9e-06
   TIGR00336 102 vGelkegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsaeeevekeyelklls 166
                   e +++++ vv+  v+  G ++l a e++q+++  v +++    +    a e+++ ++++ + +
  MMETSP1061-20121228|3274_1  14 ASEELQNNQQVVIAAVTQHGDALLFASEELQNNQQVVIAAVTQYGYALLFASEKLKNNQQVVIAA 78 
                 456677778889999*************************9999999999999999998887655 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 3.9e-05
   TIGR00336 103 GelkegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsaeeevekeyelkl 164
                  e +++++ vv+  v+  G++++ a e++++++ +v +++         a e+++ ++++ +
  MMETSP1061-20121228|3274_1  65 SEKLKNNQQVVIAAVTRDGNALKYASEELKNNQQIVFAAVTQDGNALEYASEKLKNNQQVVI 126
                 567788889999***********************998887666665578888888777655 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0056
   TIGR00336 106 kegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsa 152
                 +++++ +v   v+  G+++  a e++++++  v   iv++ rq+ +a
  MMETSP1061-20121228|3274_1  93 LKNNQQIVFAAVTQDGNALEYASEKLKNNQQVV---IVAV-RQNGKA 135
                 445566677889999************999654...3333.333345 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0012      0.98      49      85 ..       4      41 ..       2      49 .. 0.83
   2 !    6.4   0.0    0.0015       1.2      47      77 ..      77     108 ..      42     116 .. 0.80
   3 !    3.9   0.0    0.0084       6.9      48      76 ..     103     131 ..     101     147 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0012
   TIGR01166 49 vlldGeeldysrkgllelrkkv.alvlqdpddqlfaad 85
                v  +G++l+y  ++l + ++ v a v q  d  lfa++
  MMETSP1061-20121228|3274_1  4 VRQNGKALEYASEELQNNQQVViAAVTQHGDALLFASE 41
                7789************9999873578899999999875 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0015
   TIGR01166  47 GkvlldGeeldysrkgllelrkkval.vlqdp 77 
                  +v++dG++l+y  ++l + ++ v+  v qd 
  MMETSP1061-20121228|3274_1  77 AAVTRDGNALKYASEELKNNQQIVFAaVTQDG 108
                 6899****************999975266765 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.0084
   TIGR01166  48 kvlldGeeldysrkgllelrkkvalvlqd 76 
                 +v+ dG++l+y  + l + ++ v + +++
  MMETSP1061-20121228|3274_1 103 AVTQDGNALEYASEKLKNNQQVVIVAVRQ 131
                 6899***********99998887765544 PP

>> TIGR00521  coaBC_dfp: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   4.7   2.4e-06     0.002     243     348 ..      23     128 ..       6     174 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.4e-06
   TIGR00521 243 evksikvltaeemleaalnelakkldiiisaAAvaDfkpkevf.ekKikkqeeelslklkknpdiikevrkikkeqvivGFkAetnkd.likkAkeklkkknldliva 348
                 +v   +v++  + l  a +el ++++++i  AAv+ +  +  f  +K+k++++ ++  + +  + +k  ++  k++  + F+A t++  + ++A+eklk++   +iva
  MMETSP1061-20121228|3274_1  23 QVVIAAVTQHGDALLFASEELQNNQQVVI--AAVTQYGYALLFaSEKLKNNQQVVIAAVTRDGNALKYASEELKNNQQIVFAAVTQDGnALEYASEKLKNNQQVVIVA 128
                 44444555555555556678888888776..899999877665268****7777777889999*******9999888889***999988*********9888777777 PP

>> TIGR02852  spore_dpaB: dipicolinic acid synthetase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.064        53     109     130 ..      14      37 ..       6      49 .. 0.71
   2 ?    1.9   0.0     0.033        27     100     126 ..      30      56 ..      18      62 .. 0.69
   3 !    8.6   0.3   0.00029      0.24     105     154 ..      60     108 ..      46     110 .. 0.79
   4 !    9.1   0.7   0.00021      0.17      95     160 ..      75     139 ..      67     163 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.064
   TIGR02852 109 akatlrnnkPvvlaistn..dalG 130
                 a  +l+nn+ vv+a  t   dal 
  MMETSP1061-20121228|3274_1  14 ASEELQNNQQVVIAAVTQhgDALL 37 
                 667899999999988775235554 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.033
   TIGR02852 100 itdspvlmaakatlrnnkPvvlaistn 126
                 ++    l+ a  +l+nn+ vv+a  t 
  MMETSP1061-20121228|3274_1  30 TQHGDALLFASEELQNNQQVVIAAVTQ 56 
                 444556777888899999999888776 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00029
   TIGR02852 105 vlmaakatlrnnkPvvlaistndalGlnaknlarllaakniyfvPfgqdd 154
                  l+ a  +l+nn+ vv+a  t d+  l  +   +l + + i f    qd 
  MMETSP1061-20121228|3274_1  60 ALLFASEKLKNNQQVVIAAVTRDGNALKYAS-EELKNNQQIVFAAVTQDG 108
                 5677888999999999999999998887554.678888889888888885 PP

  == domain 4    score: 9.1 bits;  conditional E-value: 0.00021
   TIGR02852  95 klanaitdspvlmaakatlrnnkPvvlaistndalGlnaknlarllaakniyfvPfgqddpvkkPn 160
                  +a  + d   l  a  +l+nn+ +v+a  t d+  l+ +   +l + + +  v  +q+ +  k  
  MMETSP1061-20121228|3274_1  75 VIAAVTRDGNALKYASEELKNNQQIVFAAVTQDGNALEYAS-EKLKNNQQVVIVAVRQNGKALKYV 139
                 46666778888888999999999999999999998887554.678888888888888887766644 PP

>> TIGR01321  TrpR: trp operon repressor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.068        56      57      84 ..      14      41 ..       9      48 .. 0.77
   2 ?   -0.1   0.0      0.33   2.7e+02      59      74 ..      41      56 ..      34      69 .. 0.80
   3 !    9.6   0.0   0.00032      0.26      60      88 ..      67      95 ..      62     100 .. 0.90
   4 ?    1.5   0.0       0.1        86      59      88 ..      91     120 ..      87     126 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.068
   TIGR01321 57 sqREiaeklgvsiakitRGsnalkaldp 84
                +  E++++  v ia +t   +al  +  
  MMETSP1061-20121228|3274_1 14 ASEELQNNQQVVIAAVTQHGDALLFASE 41
                5679*************87777655555 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.33
   TIGR01321 59 REiaeklgvsiakitR 74
                 E++++  v ia +t 
  MMETSP1061-20121228|3274_1 41 EELQNNQQVVIAAVTQ 56
                59999999***99997 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00032
   TIGR01321 60 EiaeklgvsiakitRGsnalkaldpelkq 88
                 ++++  v ia +tR  nalk +  elk+
  MMETSP1061-20121228|3274_1 67 KLKNNQQVVIAAVTRDGNALKYASEELKN 95
                589999****************9999986 PP

  == domain 4    score: 1.5 bits;  conditional E-value: 0.1
   TIGR01321  59 REiaeklgvsiakitRGsnalkaldpelkq 88 
                  E++++  +  a +t   nal+ +  +lk+
  MMETSP1061-20121228|3274_1  91 EELKNNQQIVFAAVTQDGNALEYASEKLKN 120
                 6999999**************998888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       377  (0.0919064); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 711.94
//
Query:       MMETSP1061-20121228|3273_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   20.3   0.0    3.2e-05   19.8   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0048   14.2   0.0       0.01   13.1   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.6e-08   3.2e-05      83     120 ..     346     383 ..     329     385 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.6e-08
   TIGR03903  83 rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadvesh 120
                 r ++  L a a  h+aG vhRD+kP+nim+   ++++h
  MMETSP1061-20121228|3273_1 346 RFVAELLHAGALMHEAGFVHRDIKPKNIMIDLVEETEH 383
                 6778899999********************88777665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0     5e-06      0.01      95     124 ..     347     376 ..     336     434 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5e-06
   TIGR03724  95 llkevGelvgklHkagivhgDlttsNiivk 124
                 ++ e+ ++ + +H+ag+vh D+ ++Ni+++
  MMETSP1061-20121228|3273_1 347 FVAELLHAGALMHEAGFVHRDIKPKNIMID 376
                 56666667789****************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 1874.25
//
Query:       MMETSP1061-20121228|3275_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-12   44.4   0.0    2.2e-09   34.9   0.0    2.2  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
      7e-12   43.3   0.0    2.7e-11   41.4   0.0    1.8  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    1.7e-07   28.6   0.0      5e-07   27.0   0.0    1.6  2  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
    2.5e-06   24.6   0.0    3.6e-06   24.0   0.0    1.1  1  TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
    4.1e-05   20.7   0.0    6.7e-05   20.0   0.0    1.3  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    0.00012   19.4   0.0    0.00019   18.7   0.0    1.2  1  TIGR03611 RutD: pyrimidine utilization protein D
    0.00032   18.0   0.0     0.0029   14.9   0.0    2.0  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
     0.0061   14.0   0.0      0.017   12.6   0.0    1.6  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
  ------ inclusion threshold ------
      0.022   11.7   0.0      0.042   10.7   0.0    1.4  1  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0   4.9e-12   2.2e-09       3     109 ..     122     233 ..     120     250 .. 0.76
   2 !    7.3   0.0    0.0013      0.59     202     248 ..     363     408 ..     351     411 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 4.9e-12
   TIGR03695   3 pvlvlLHGflgskedwqalieeleekfsv.lalDLpgHGksksl.....kekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaperleglilesaspGLe 109
                   lv++HG++  +  + +  + l++ f++ + +DL+g G s+ +     +++++++ e+   e l+   ++ kiek++L G S+GG + +a++ ++per+ +l+l s   G+ 
  MMETSP1061-20121228|3275_1 122 YPLVIVHGYMNGALYFYRNLTGLANYFNTvVSVDLLGWGLSSRPsfgllRDDSVETAEAFFVESLEAWRSANKIEKMTLAGHSMGGYLSVAYCEKYPERVDSLLLLSP-AGVP 233
                 579*******9998888888888888876489*******997551222246677777777777677777888*******************************99885.3443 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0013
   TIGR03695 202 vGekDekFkkiakemqkllpalklevieeaGHnihlenpeafakile 248
                  G  D++ + +a e q ++p++ +  +++aGH + len++ f++++e
  MMETSP1061-20121228|3275_1 363 RGGLDTQRACLASEDQ-TTPRVGVYKVKNAGHLLMLENSKGFNTAVE 408
                 5777777778888877.8999*********************99986 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   5.9e-14   2.7e-11      20     142 ..     116     241 ..     105     251 .. 0.86
   2 ?   -1.3   0.0      0.61   2.8e+02     263     283 ..     387     407 ..     371     408 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 5.9e-14
   TIGR01250  20 keegekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsd...eklltidr.fvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgliissmlasipeyvkelnr 142
                 +e++++ +l+++HG      + + +l  l++   +v++ D LG g S++P++         t +  fv+ le+ r++ + +k+ l g+S Gg L ++Y+ ky++ + +l++ s+ a +pe+++e + 
  MMETSP1061-20121228|3275_1 116 QEQEHQYPLVIVHGYMNGALYFYRNLTGLANYFNTVVSVDLLGWGLSSRPSFGLlrdDSVETAEAfFVESLEAWRSANKIEKMTLAGHSMGGYLSVAYCEKYPERVDSLLLLSP-AGVPEHTAEKEA 241
                 6788899********************99999899***************98545445666776537999***************************************99987.467777666554 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.61
   TIGR01250 263 vfedgshltmieepeeylkll 283
                  +++++hl m+e+ + ++  +
  MMETSP1061-20121228|3275_1 387 KVKNAGHLLMLENSKGFNTAV 407
                 56899**********998765 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.1e-09     5e-07      44     139 ..     142     234 ..     117     249 .. 0.77
   2 ?   -2.0   0.0      0.76   3.4e+02      56      77 ..     388     409 ..     383     414 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.1e-09
   TIGR03343  44 ggwsnyyrniealvdagyrvilkdapgfnksdevvmdeqrglvnaravkglmdaldiekahlvgnsmggatalnfaleypdrlgklilmgpgglgk 139
                 +g +ny++ + ++   g+ +  + + g+ + d+v + e        ++     a +iek  l g smgg  ++ ++ +yp+r++ l+l+ p+g+ +
  MMETSP1061-20121228|3275_1 142 TGLANYFNTVVSVDLLGWGLSSRPSFGLLRDDSVETAEA---FFVESLEAWRSANKIEKMTLAGHSMGGYLSVAYCEKYPERVDSLLLLSPAGVPE 234
                 566777777777777777777777777777777665554...33456677778999*************************************866 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.76
   TIGR03343  56 lvdagyrvilkdapgfnksdev 77 
                 + +ag+ ++l+++ gfn + e+
  MMETSP1061-20121228|3275_1 388 VKNAGHLLMLENSKGFNTAVEL 409
                 5689999999******987665 PP

>> TIGR01836  PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   7.9e-09   3.6e-06      57     170 ..     116     230 ..     109     253 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 7.9e-09
   TIGR01836  57 kekllktPlLivyaLvnrpyilDlqedrslvknLLeeGldvyliDWgyPdkadryltldDyvn...gyikkavdkikrtseldkisllGiCqGGtfsliyaaLeedkiknLvtmvtp 170
                 +e+ +++Pl+iv+  +n +    +  + + ++n +++ + v l+ Wg  ++    l  dD v+    +  ++ +  +++++++k++l G  +GG +s+ y+  +++++  L+++ + 
  MMETSP1061-20121228|3275_1 116 QEQEHQYPLVIVHGYMNGAL--YFYRNLTGLANYFNTVVSVDLLGWGLSSRPSFGLLRDDSVEtaeAFFVESLEAWRSANKIEKMTLAGHSMGGYLSVAYCEKYPERVDSLLLLSPA 230
                 67899************873..456677789999**************************996333699999**************************************9988753 PP

>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.5e-07   6.7e-05      78     125 ..     179     226 ..     112     232 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.5e-07
   TIGR01249  78 twdlvadieklreklkikkWlvfGGsWGstlalayaqkhPekvtklvl 125
                    +v  +e  r + ki+k ++ G s G  l++ay+ k+Pe+v+ l+l
  MMETSP1061-20121228|3275_1 179 EAFFVESLEAWRSANKIEKMTLAGHSMGGYLSVAYCEKYPERVDSLLL 226
                 2347999**************************************998 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.1e-07   0.00019       9     111 ..     117     227 ..     111     247 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.1e-07
   TIGR03611   9 sdadaevvvlssGLGGsgsywapqlevleqefr.vvvyDhrGtgrspee...laedysiaala....advlelldaldiekahvvGhalGgliglelalrkperlaklvli 111
                 +++++  +v+  G    + y+  +l+ l+++f+ vv  D  G g s++    l  d s++       + + +  +a +iek+ + Gh++Gg++++    ++per+++l+l+
  MMETSP1061-20121228|3275_1 117 EQEHQYPLVIVHGYMNGALYFYRNLTGLANYFNtVVSVDLLGWGLSSRPsfgLLRDDSVETAEaffvESLEAWRSANKIEKMTLAGHSMGGYLSVAYCEKYPERVDSLLLL 227
                 4555666788888888899*************736779****998876433356666665443011133444445678*****************************9886 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   6.3e-06    0.0029      40     113 ..     149     230 ..     114     245 .. 0.70
   2 ?    0.6   0.0      0.15        67     222     246 ..     383     407 ..     372     410 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 6.3e-06
   TIGR02427  40 frvlryDkrGHGlSdvpegpy....sied....laddvlallDalgiekaavcGlSlGGliaqaLaarrpdrvealvlsnta 113
                   v+ +D  G GlS+ p+       s+e+    +++ + a   a +iek++++G S+GG ++ a   + p+rv++l+l++ a
  MMETSP1061-20121228|3275_1 149 NTVVSVDLLGWGLSSRPSFGLlrddSVETaeafFVESLEAWRSANKIEKMTLAGHSMGGYLSVAYCEKYPERVDSLLLLSPA 230
                 3467789999999987765431111555411113444555556678******************************998755 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.15
   TIGR02427 222 arfaeieeaaHlpnleqpeafaall 246
                   + ++++a+Hl  le+++ f++++
  MMETSP1061-20121228|3275_1 383 VGVYKVKNAGHLLMLENSKGFNTAV 407
                 55678999*************9987 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   3.6e-05     0.017       7     105 ..     124     238 ..     118     244 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.6e-05
   TIGR01738   7 lvLihGWglnaevfadlveeLsahf.tlslvDLPGyGdsa..elral..slaevaeai.........laqapakaiwlGWsLGGLvalhlalthpdkvrsLvlv..asspkfaar 105
                 lv++hG+   a  f      L + f t+  vDL G+G s+   +  l  +  e aea           a+  +k  + G s+GG +++    ++p++v sL+l+  a  p  +a+
  MMETSP1061-20121228|3275_1 124 LVIVHGYMNGALYFYRNLTGLANYFnTVVSVDLLGWGLSSrpSFGLLrdDSVETAEAFfvesleawrSANKIEKMTLAGHSMGGYLSVAYCEKYPERVDSLLLLspAGVPEHTAE 238
                 899***976666677777888888846889*******85412332221122223333211111111112223457789***********************99833556666665 PP

>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.3e-05     0.042     131     162 ..     199     230 ..     184     249 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.3e-05
   TIGR01392 131 avvGgSlGGmqalewalsypervkkivvlats 162
                 +  G S+GG  ++ +  +yperv++++ l+ +
  MMETSP1061-20121228|3275_1 199 TLAGHSMGGYLSVAYCEKYPERVDSLLLLSPA 230
                 5679**********************999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 1597.41
//
Query:       MMETSP1061-20121228|3276_1  [L=965]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (965 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 3184.24
//
Query:       MMETSP1061-20121228|3277_1  [L=863]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-166  553.9   1.5   2.1e-104  347.9   0.0    3.0  3  TIGR00490 aEF-2: translation elongation factor aEF-2
    7.5e-72  240.3   1.8    5.8e-28   95.2   0.0    3.4  3  TIGR00484 EF-G: translation elongation factor G
    3.4e-51  172.0   3.6    1.1e-32  110.9   1.3    4.7  4  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    1.5e-36  123.8   1.1    2.4e-14   50.4   0.2    4.2  4  TIGR01393 lepA: GTP-binding protein LepA
    8.4e-19   65.8   0.1    3.1e-18   63.9   0.0    2.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
    4.8e-17   59.4   2.7    9.6e-09   32.0   0.0    3.1  3  TIGR00503 prfC: peptide chain release factor 3
    3.7e-13   46.8   1.1      2e-09   34.5   0.1    2.3  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
      4e-13   46.8   0.7    4.7e-09   33.3   0.0    2.3  2  TIGR00487 IF-2: translation initiation factor IF-2
    2.2e-11   41.0   2.7    1.9e-05   21.4   0.2    3.1  3  TIGR00485 EF-Tu: translation elongation factor Tu
    3.5e-09   34.2   1.4    4.5e-09   33.8   0.2    1.7  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    8.6e-08   28.9   2.3    1.5e-07   28.1   0.8    2.0  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    1.5e-07   28.0   1.0      0.002   14.5   0.0    2.2  2  TIGR00491 aIF-2: translation initiation factor aIF-2
    0.00017   18.6   0.7     0.0093   12.9   0.1    2.4  3  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
  ------ inclusion threshold ------
      0.016   12.0   0.3       0.14    8.9   0.0    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.8   0.2   2.6e-20   7.5e-18       6      82 ..       6      82 ..       3      91 .. 0.96
   2 !  141.8   0.1   1.6e-44   4.8e-42      82     221 ..     116     255 ..      85     262 .. 0.91
   3 !  347.9   0.0  7.3e-107  2.1e-104     226     718 ..     332     850 ..     314     852 .. 0.88

  Alignments for each domain:
  == domain 1    score: 61.8 bits;  conditional E-value: 2.6e-20
   TIGR00490  6 iakikelmekpefirnigivahidhgkttlsdnllagagmiseelageqlfldfdeqeqergitidaanvsmvheye 82
                +++++ +m  ++ ir + ++ah+dhgkttl+d l+  ag+is++ ag  ++ d   +e+ergiti+++ +sm  ey+
  MMETSP1061-20121228|3277_1  6 VEQMRSIMDLKHNIRSMSVIAHVDHGKTTLTDSLVQKAGIISAKAAGGARYTDTRADEAERGITIKSTGISMFFEYD 82
                7889999*********************************************************************8 PP

  == domain 2    score: 141.8 bits;  conditional E-value: 1.6e-44
   TIGR00490  82 egneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrlinelkltaeelqerlikiiaevnklikkmapeefkdkwkvrvedgsvafgsayynwaisvpimkkt.gitf 221
                   n ylinlid+pghvdf  +vt a+r  dga+vvv++++gv  qtetvlrqal e+vkpvl++nkvdr + el+l aeel + + + i+ vn ++ + + +    + +v+  +g+vafgs +++wa ++    kt g +f
  MMETSP1061-20121228|3277_1 116 SENSYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQALSERVKPVLMVNKVDRALLELQLPAEELYQAFCRAIESVNVIVATYNDDAL-GDVQVDPTKGTVAFGSGLHQWAFTLKKFAKTyGAKF 255
                 4589*****************************************************************************************99999998888.889*******************99875544426666 PP

  == domain 3    score: 347.9 bits;  conditional E-value: 7.3e-107
   TIGR00490 226 kyikedkqkelakk.aplyqvvldmvikhlpspaeaqkyriaviwkgdlnseagkamlncdpe..gplavvitkivvdkhagev.avgrlysgaikkgsev......ylvdskak...ariqqvgvymgpervevdeipagnivavvglkeavageticstdkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirek.agvevetsepivvyretvtgtspvv.egkspnkhnrlyivvepleesvlqafkegkikdvkvkkkeiakeli.eagldkeeakrveev....yegnllinvtrgiqyldevkelilegfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqilemkqe..gdmvtikakvpvaemfgfagairgategralwstefagfekv...pre...lqeelvkevrkrkglk 718
                 +y  ++  k + +k  p  + vl+m++ hlpsp++aq yr+  +++g l+ ++  a+  cd     p+ + ++k++   + g   a gr++sg+i  g++v      y+ ++k+    ++iq+  ++mg    +v ++pagn +a+vg+ +    +   +t+   + ++++k    pvv  a+e kn+ dlpkl+e ++++ak dp v   +  e+geh+i+  gelhlei  +  +++ +g ev++s+p+v yretv   s  v  +ks nkhnr++++ ep+ +++  a+++g +++++ + k + ++l  + g d  e ++++ +       n +++ t+g++yl e+ke ++ gf+ a  +gp+ +e+  g +  l+d++lh da+hrg  q++p+ r  if+++l+ ep llep+    i+vpqd mg +   +  rrg ++  +q+    mvt+ a  pv e fgf+ ++r+ t g+a+  + f  +e +   p++     +e v  vrkrkglk
  MMETSP1061-20121228|3277_1 332 EYTGKQLLKRVMQKwLPAGDTVLEMIVLHLPSPVKAQSYRVEGLYDGPLDDQTATAIRTCDTSdgAPMCMYVSKMIPTSDKGRFyAFGRVFSGKIATGQKVrimgpnYVSGKKTElwvKNIQRTVIMMGKYTEQVSDVPAGNTCALVGVDQYLLKSGTIATADDAHCIKTMKFSVSPVVRCAVEPKNSADLPKLVEGMKRLAKSDPMVVCSVG-ESGEHIIAASGELHLEICLQDLQNDfMGTEVKVSDPVVSYRETVQALSDQVcLAKSANKHNRIFLQAEPMSAELCIAIEDG-VVNTQADAKALGRQLAdDYGWDVSEGRKIWAFgpdqNGPNTYVDTTKGVNYLLEIKESVVAGFNWACGAGPLCEEQLRGCRFNLMDVVLHADAIHRGMGQIMPTSRRVIFSSMLSGEPCLLEPVFLANISVPQDAMGNVYGVLTRRRGHVFSEDQKpgTPMVTLLAYLPVLESFGFTADLRSHTGGKAFPQMSFDHWEPMsgsPQDpgtKCNETVIAVRKRKGLK 850
                 45555556666665369999*****************************************753359********999998875499*************9333333333444433335799999**************************99888778888999*******************************************99886.68*****************99999989*****************9998766269***************************.999******9999887257***********8722214569**************************************************************************************************************9877653257*****************************9999988886544444422266789999*******8 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   1.4   2.1e-28   6.1e-26       8     140 ..      17     185 ..       9     217 .. 0.92
   2 !   95.2   0.0     2e-30   5.8e-28     269     489 ..     352     592 ..     349     627 .. 0.82
   3 !   52.0   0.0   2.3e-17   6.8e-15     524     675 ..     668     823 ..     644     831 .. 0.72

  Alignments for each domain:
  == domain 1    score: 88.6 bits;  conditional E-value: 2.1e-28
   TIGR00484   8 eklrniGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattvewkd......................................frinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdki 140
                 +++r + + ah+d Gktt+t+ ++  +g i +  +   Ga   d    e erGiti s+  +++++                                       + inlid+PGhvdf+ ev  +lrv dGa++v+d++ Gv  q+etv rqa   +v  +++vnk+d+ 
  MMETSP1061-20121228|3277_1  17 HNIRSMSVIAHVDHGKTTLTDSLVQKAGIISA--KAAGGARYTDTRADEAERGITIKSTGISMFFEYdmkageaagltaeesaqlaqeiadkkdaesnvnisensYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQALSERVKPVLMVNKVDRA 185
                 479*********************99999875..56789999*********************99878999**************************************************************************************************97 PP

  == domain 2    score: 95.2 bits;  conditional E-value: 2e-30
   TIGR00484 269 llldavvdylPsPvdvka..ikai.....dedtekei.elkasddepfvalafkvatdpfvgkl.tfvrvysGvlksGsevl....nsrkekke.....rvgrlvkmhankreeieevraGdiaaliGlkdt.ttGdtlcdekaevilesmefp.ePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefk.vevnvGkPqvayretirkka 489
                 ++l+ +v +lPsPv  ++  ++++     d++t + i +  +sd +p+     k+      g++ +f rv+sG++ +G++v     n +  kk       + r v m  + +e++++v aG+ +al+G+++      t++  +++  +++m+f+  Pv+  avePk+ ad  k+   + +la+ dP   v +  esg+ iia  Gelhl+i ++ l+ +f   ev+v  P v+yret++  +
  MMETSP1061-20121228|3277_1 352 TVLEMIVLHLPSPVKAQSyrVEGLydgplDDQTATAIrTCDTSDGAPMCMYVSKMIPTSDKGRFyAFGRVFSGKIATGQKVRimgpNYVSGKKTelwvkNIQRTVIMMGKYTEQVSDVPAGNTCALVGVDQYlLKSGTIATADDAHCIKTMKFSvSPVVRCAVEPKNSADLPKLVEGMKRLAKSDPMV-VCSVGESGEHIIAASGELHLEICLQDLQNDFMgTEVKVSDPVVSYRETVQALS 592
                 6889999999**99887522455421111334444441346788999999999988777777753899************96555577777775222225799**************************9862467799999999999***99758******************************86.667789************************9648**************98765 PP

  == domain 3    score: 52.0 bits;  conditional E-value: 2.3e-17
   TIGR00484 524 vneikGGviPreyipavdkGleealesGvlaGyPvvdikvtlfdGsyhdvd.sselafklaas.lalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegseeresv..kvvkaevPlsemfGyatdlrsatqGraeysmeflkya 675
                 v++ kG     e  ++v +G++ a  +G+l    +   + +l+d   h       +   + +s   +  ++   +P lleP+   +++vP++ +G+v G l+rrrg + +++++  +  +++ a +P+ e fG+++dlrs+t G+a   m f++++
  MMETSP1061-20121228|3277_1 668 VDTTKGVNYLLEIKESVVAGFNWACGAGPLCEEQLRGCRFNLMDVVLHADAiHRGMGQIMPTSrRVIFSSMLSGEPCLLEPVFLANISVPQDAMGNVYGVLTRRRGHVFSEDQKPGTpmVTLLAYLPVLESFGFTADLRSHTGGKAFPQMSFDHWE 823
                 555555555555556666666666666666655555555555555555322023343333333123445666789*********************************9999987651155679*****************************986 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.9   1.3   3.6e-35   1.1e-32       1     144 [.      19     200 ..      19     208 .. 0.96
   2 ?   -3.3   0.0       1.4     4e+02     180     233 ..     301     353 ..     289     358 .. 0.69
   3 !   29.6   0.0   1.5e-10   4.3e-08     184     388 ..     382     587 ..     368     595 .. 0.80
   4 !   23.8   0.0   8.5e-09   2.5e-06     392     476 ..     745     830 ..     724     849 .. 0.84

  Alignments for each domain:
  == domain 1    score: 110.9 bits;  conditional E-value: 3.6e-35
   TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykd......................................tkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLf 144
                 ir +++iahvDhGkttl D+l++++g++++k +   r  D+   e erGiti +   ++ ++                                       + in++D PGh Df  ev   l + dg+l++vD+ +G+  qt  vl++al+ + kp++++nk+Dr+  + +   +e ++ f
  MMETSP1061-20121228|3277_1  19 IRSMSVIAHVDHGKTTLTDSLVQKAGIISAKAAGGARYTDTRADEAERGITIKSTGISMFFEYdmkageaagltaeesaqlaqeiadkkdaesnvnisensYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQALSERVKPVLMVNKVDRALLELQLPAEELYQAF 200
                 7999******************************************************998877899********************************9999***************************************************************9888887777777666 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.4
   TIGR01394 180 eplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqv 233
                 + lf+ai+ + +   ++  +++ +   + + +ey+G+ ++ rv++  + +g++v
  MMETSP1061-20121228|3277_1 301 TTLFEAIMAEKHGKVKKMLKAIGVEL-KGEEKEYTGKQLLKRVMQKWLPAGDTV 353
                 55666666665555554444444443.346788999999999999888888877 PP

  == domain 3    score: 29.6 bits;  conditional E-value: 1.5e-10
   TIGR01394 184 dailehvpaPkadkdeplqllvttldydeylGri.aigrverGkvkkgqqvallkkd...gkiek...ariskllafeglerveideaeaGdivavaGlediei.getiadaeeaealpllkvd.ePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrre..GfelsvskPkvivkei 388
                 d   + +++  +++ +p+ + v+++  ++  Gr  a grv +Gk+ +gq+v+++  +   gk+++   + i++ + ++g    ++ ++ aG+ +a++G+++  + + tia+a+ a+ ++++k    P ++  ++  +s       k v +    +rL     +   + v ++ e+ ++ ++  GeLhl i + +++ +  G e++vs P v ++e+
  MMETSP1061-20121228|3277_1 382 DQTATAIRTCDTSDGAPMCMYVSKMIPTSDKGRFyAFGRVFSGKIATGQKVRIMGPNyvsGKKTElwvKNIQRTVIMMGKYTEQVSDVPAGNTCALVGVDQYLLkSGTIATADDAHCIKTMKFSvSPVVRCAVEPKNSADL---PKLVEGM---KRL----AKSDPMVVCSVGESGEHIIAASGELHLEICLQDLQNDfmGTEVKVSDPVVSYRET 587
                 5566778888899999*****************7478****************987766644444121567788889999999*****************9887367************9998646777777777666422...3334332...344....44446778888888999****************99876699*******9999985 PP

  == domain 4    score: 23.8 bits;  conditional E-value: 8.5e-09
   TIGR01394 392 klePieeltidvpeefvgavieklgkrkgelkdmesk.gsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkgeie 476
                  leP+    i vp++++g v   l++r+g++ + ++k g+  v l   +P    +Gf +++ ++t G+++ + +fd++ep++g+ +
  MMETSP1061-20121228|3277_1 745 LLEPVFLANISVPQDAMGNVYGVLTRRRGHVFSEDQKpGTPMVTLLAYLPVLESFGFTADLRSHTGGKAFPQMSFDHWEPMSGSPQ 830
                 579***************************9876555155778888899*********************************9754 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   6.2e-16   1.8e-13       2      63 ..      18      80 ..      17      91 .. 0.88
   2 !   50.4   0.2   8.2e-17   2.4e-14      67     136 ..     117     186 ..     107     214 .. 0.88
   3 !   15.1   0.0   4.1e-06    0.0012     207     377 ..     417     590 ..     403     629 .. 0.69
   4 !    5.8   0.0    0.0026      0.77     399     466 ..     746     813 ..     740     824 .. 0.81

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 6.2e-16
   TIGR01393  2 kirnfsiiahidhGkstladrllektkavserel.keqlldsldlererGitikaqavrlkyk 63
                +ir +s+iah+dhGk+tl+d l++k++++s +    +++ d+   e erGitik++ + + ++
  MMETSP1061-20121228|3277_1 18 NIRSMSVIAHVDHGKTTLTDSLVQKAGIISAKAAgGARYTDTRADEAERGITIKSTGISMFFE 80
                89****************************99872589********************99764 PP

  == domain 2    score: 50.4 bits;  conditional E-value: 8.2e-17
   TIGR01393  67 geeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPs 136
                 +++y +nlid PGhvdfs ev+ +l  ++Gal++vd+  Gv  qt + +  al + ++ + ++nk+d   
  MMETSP1061-20121228|3277_1 117 ENSYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQALSERVKPVLMVNKVDRAL 186
                 689***************************************************************9655 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 4.1e-06
   TIGR01393 207 vyvrvveGkikkgdkikllst......gkeyeveevgvltpkl.vkeeelkaGevGyliagikdvkdvkvGdtitsvkkpakealpGfkkvkpvvfaglyPidsedyeelrdaleklklndasltyekesskalGfGfrcGflGllhleviqerleref.dldliataPsvvykvklkd 377
                 ++ rv++Gki++g+k++++        ++e  v+++  + + + + +e+++    G  +a +   +      ti+++++    +   f  v pvv +++ P +s+d  +l + +++l+ +d  ++     s      + +   G lhle+  + l+ +f   ++ +  P v+y+ + + 
  MMETSP1061-20121228|3277_1 417 AFGRVFSGKIATGQKVRIMGPnyvsgkKTELWVKNIQRTVIMMgKYTEQVSDVPAGNTCALVGVDQYLLKSGTIATADDAHCIKTMKF-SVSPVVRCAVEPKNSADLPKLVEGMKRLAKSDPMVVCSVGESGE----HIIAASGELHLEICLQDLQNDFmGTEVKVSDPVVSYRETVQA 590
                 5779**************9741222113455677777666666444444444444554444433333333445555554433333445.699*******************************9998877743....456778***************9457888899*****855443 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.0026
   TIGR01393 399 eePyvkatiivpeeylgailelcqekrgvlkkl.eyldkervelvyelPlaeivldffdklksiskGya 466
                  eP+  a+i vp++ +g++  +++++rg++ +  +  ++  v+l   lP+ e  + f   l+s + G a
  MMETSP1061-20121228|3277_1 746 LEPVFLANISVPQDAMGNVYGVLTRRRGHVFSEdQKPGTPMVTLLAYLPVLES-FGFTADLRSHTGGKA 813
                 69**************************8765504556778888888999885.688888888887755 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.0   1.1e-20   3.1e-18       6     124 ..      22     184 ..      17     200 .. 0.95

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 1.1e-20
   TIGR00231   6 ivivGhvdvGKstLlnsllknkisiteskp.gvtrdyvteqieedGkt..................................................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDl 124
                   +++hvd+GK+tL++sl ++ ++i++  + g+  ++  + + e+G+t                                                  y +nl+D +G++df         ev++ l+v+d+++ v+d+ +g+  qt+++ ++a ++ v+ +l+vnK+D 
  MMETSP1061-20121228|3277_1  22 MSVIAHVDHGKTTLTDSLVQKAGIISAKAAgGARYTDTRADEAERGITikstgismffeydmkageaagltaeesaqlaqeiadkkdaesnvnisensYLINLIDSPGHVDF-------SSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQALSERVKPVLMVNKVDR 184
                 569*******************9998877678888999999***********************************************************************.......**************************************************7 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.2     1e-06   0.00031      10      78 ..      18      82 ..       9      86 .. 0.85
   2 !   32.0   0.0   3.3e-11   9.6e-09      76     148 ..     116     188 ..     108     216 .. 0.83
   3 !    8.8   0.0   0.00036       0.1     313     459 ..     416     575 ..     385     618 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1e-06
   TIGR00503 10 krrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisitts..vlqfdyr 78
                + r++++i+h d Gkttlt+ +      +q+aG + a+ +     +d  + e +rGi+i ++   + f+y 
  MMETSP1061-20121228|3277_1 18 NIRSMSVIAHVDHGKTTLTDSL------VQKAGIISAKAAGGARYTDTRADEAERGITIKSTgiSMFFEYD 82
                46899**************987......799**9999999999999*************887324667775 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 3.3e-11
   TIGR00503  76 dyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevt.rlrdlpiltflnkldrdird 148
                   +  l+nl+d+pGh dfs +   +l  +d al+v+d+  Gv  +t  +l  +   r  p+l ++nk+dr  ++
  MMETSP1061-20121228|3277_1 116 SENSYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQAlSERVKPVL-MVNKVDRALLE 188
                 567889****************************************9988765155667766.79*****8764 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.00036
   TIGR00503 313 vaflrvvsGkyekdmklkhv....rtgkd....v.vlsdalkllagdresveeayaGd...iiGlh....nhGtiqiGdtvtqGeklkftgipnfapelfrrlrlkdplkqkqllkGlvelseeGavqvlrslden.dlivaavGvlqfdvvvarlkeey.nvea 459
                  af rv sGk   + k++ +      gk+    v  + ++  ++ +  e+v    aG+   ++G++      Gti   d  +  +++kf+     +p +   +  k+     +l  G+ +l +   + v  s+ e+ + i+aa G l +++  + l++++ + e 
  MMETSP1061-20121228|3277_1 416 YAFGRVFSGKIATGQKVRIMgpnyVSGKKtelwVkNIQRTVIMMGKYTEQVSDVPAGNtcaLVGVDqyllKSGTIATADDAHCIKTMKFS----VSPVVRCAVEPKNSADLPKLVEGMKRLAKSDPMVVC-SVGESgEHIIAASGELHLEICLQDLQNDFmGTEV 575
                 489999999999999988532221345541222224677788888888999988888722246654222257999999999999999996....6778888999999999***********999887665.566655********************99823444 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00011     0.033       5      38 ..      24      70 ..      21      82 .. 0.84
   2 !   34.5   0.1   6.9e-12     2e-09      48     136 ..     118     205 ..     112     216 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00011
   TIGR00475  5 taGHvDHGKttLlkaltgid.............adrlPeEkKRGlti 38
                +  HvDHGKttL  +l + +             +d + +E  RG+ti
  MMETSP1061-20121228|3277_1 24 VIAHVDHGKTTLTDSLVQKAgiisakaaggaryTDTRADEAERGITI 70
                568*********99997655555788999999999999999999999 PP

  == domain 2    score: 34.5 bits;  conditional E-value: 6.9e-12
   TIGR00475  48 edkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeee 136
                 + + ++liD PGH  f +++ a++   d+al+vvd+ +Gv +qt+  L+ + +  +k  + +++K+Dr+  e+   +Ee+ +++ +  e
  MMETSP1061-20121228|3277_1 118 NSYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQALSERVK-PVLMVNKVDRALLELQLPAEELYQAFCRAIE 205
                 44899*****************************************99999888888.78899*****999988888888888877655 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   6.5e-05     0.019      90     119 ..      22      53 ..       3      58 .. 0.73
   2 !   33.3   0.0   1.6e-11   4.7e-09     132     200 ..     117     185 ..      87     199 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.5e-05
   TIGR00487  90 vtimGhvDhGktsLLdsi.rktk.vaegeaGG 119
                 + ++ hvDhGkt+L ds+ +k+  ++++ aGG
  MMETSP1061-20121228|3277_1  22 MSVIAHVDHGKTTLTDSLvQKAGiISAKAAGG 53 
                 57899***********9625555245556666 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 1.6e-11
   TIGR00487 132 edkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkp 200
                 e+   i ++D PGh  f+s  +   +vtD +++vv  +DGv  qt+  +  a +  v  ++++nk+D+ 
  MMETSP1061-20121228|3277_1 117 ENSYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQALSERVKPVLMVNKVDRA 185
                 344489***************************************************99********86 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.2   6.3e-08   1.9e-05      14      68 ..      21      75 ..      10      98 .. 0.78
   2 !   14.8   0.0   6.7e-06     0.002      71     140 ..     116     184 ..     100     200 .. 0.76
   3 ?    3.2   0.0     0.022       6.6     208     270 ..     396     461 ..     372     502 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 6.3e-08
   TIGR00485 14 nvgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargitintahv 68
                 +  i hvdhgkttlt ++++     +  aa      d+  +e +rgiti+++ +
  MMETSP1061-20121228|3277_1 21 SMSVIAHVDHGKTTLTDSLVQKAGIISAKAAGGARYTDTRADEAERGITIKSTGI 75
                46789************998876655555555555678999*********98765 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 6.7e-06
   TIGR00485  71 etekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdl 140
                 + ++     +d pgh d+  ++ +     dga++vv + dg+  qt   +  a      k v+++nkvd 
  MMETSP1061-20121228|3277_1 116 SENSYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQALSER-VKPVLMVNKVDR 184
                 5555555679********99988888889****************976544333333.344666788775 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.022
   TIGR00485 208 dkpfllaiedvfsitgrgtv.vtgrvergevkvgeeveivglk..etkkttvtgvemfkklldeak 270
                   p+ + +  ++  + +g   + grv  g++ +g++v i+g +  + kkt +   ++ + ++  +k
  MMETSP1061-20121228|3277_1 396 GAPMCMYVSKMIPTSDKGRFyAFGRVFSGKIATGQKVRIMGPNyvSGKKTELWVKNIQRTVIMMGK 461
                 46788888888888888875278*****************97643344444443344444444455 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.2   1.5e-11   4.5e-09       7     146 ..      21     183 ..      16     205 .. 0.69
   2 ?   -2.8   0.0         2   5.9e+02     234     302 ..     419     487 ..     418     496 .. 0.65

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1.5e-11
   TIGR03680   7 niglvGhvDhGkttlvkal...........t.G.vwtdthseelkrgisiklGyadaeikkceeceepeaytteekc.......eecgsete.....llrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkid 146
                 +++++ hvDhGkttl+ +l           + G  +tdt  +e  rgi+ik   + + +  + ++ e   +t ee++       ++ ++e++         + ++D+PGh  +   + +   + dgal+v++  + v   qt+  l       +k  v++ nk+d
  MMETSP1061-20121228|3277_1  21 SMSVIAHVDHGKTTLTDSLvqkagiisakaAgGaRYTDTRADEAERGITIKSTGISMFFEYDMKAGEAAGLTAEESAqlaqeiaDKKDAESNvniseNSYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGV-CVQTETVLRQALSERVKP-VLMVNKVD 183
                 5789***********9988444222222221223489**************88777777776666666666655543111100044444443333224556889*************9999************9998.678877665443344444.34446666 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2
   TIGR03680 234 GslvqGklkvgdeieirPGikvekegktey.epiltevtsleagkkkveeakPgGlvavgtkLDPaltka 302
                 G +  Gk+ +g+++ i     v+ ++   + ++i+ +v+ + + +++v  +  g + a    +D  l k+
  MMETSP1061-20121228|3277_1 419 GRVFSGKIATGQKVRIMGPNYVSGKKTELWvKNIQRTVIMMGKYTEQVSDVPAGNTCA-LVGVDQYLLKS 487
                 5677899999999999744444433333342678888988888888888775554444.34556666555 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.8   5.2e-10   1.5e-07       9     155 ..      21     186 ..      13     230 .. 0.69
   2 ?   -4.0   0.0       2.7   7.9e+02     246     270 ..     418     443 ..     416     455 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 5.2e-10
   TIGR00483   9 nvafighvdsgkstlvgrllyeagaiderll.....eklkkeaeekg...ka...sfefayvldk.....lkeerergvtidvahkk.......fetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvn 155
                  +++i hvd+gk+tl+  l+ +ag i+ +          + + +e+g   k+   s+ f y +       l +e    ++ ++a kk       +  + y + ++d+pgh df  ++ +    +d a++vv++ dg   v  qt   +  a +  +k + + +nk+d+  
  MMETSP1061-20121228|3277_1  21 SMSVIAHVDHGKTTLTDSLVQKAGIISAKAAggaryTDTRADEAERGitiKStgiSMFFEYDMKAgeaagLTAEESAQLAQEIADKKdaesnvnISENSYLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDG---VCVQTETVLRQALSERVKPV-LMVNKVDRAL 186
                 5789**********************998752211134455666776333222223456666643333348889999999999998843333223457899***************9999999************9...66666555545555556554.5688888754 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 2.7
   TIGR00483 246 vgrvetgvlkkgekv.vfepagvsge 270
                  grv +g + +g+kv ++ p  vsg+
  MMETSP1061-20121228|3277_1 418 FGRVFSGKIATGQKVrIMGPNYVSGK 443
                 599*********99956789888875 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   3.6e-05     0.011       7      36 ..      22      53 ..      16      58 .. 0.74
   2 !   14.5   0.0   6.7e-06     0.002      72     133 ..     123     184 ..      98     187 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.6e-05
   TIGR00491  7 vavlGhvdhGkttlldki.rktr.vakreaGg 36
                ++v+ hvdhGkttl d + +k+  + ++ aGg
  MMETSP1061-20121228|3277_1 22 MSVIAHVDHGKTTLTDSLvQKAGiISAKAAGG 53
                589*************8624444144566665 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 6.7e-06
   TIGR00491  72 lvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
                  +id+PGh  f+s       ++d a++vvd  +G+  qt+  +    + ++  v+  nk+dr
  MMETSP1061-20121228|3277_1 123 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQALSERVKPVLMVNKVDR 184
                 47***************************************999888889999999*****8 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.9   1.1e+03       8      29 ..      27      48 ..      25      70 .. 0.75
   2 !   12.9   0.1   3.2e-05    0.0093      84     149 ..     124     188 ..     107     223 .. 0.77
   3 ?    3.6   0.0      0.02       5.9     195     259 ..     376     445 ..     364     517 .. 0.63

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 3.9
   TIGR02034  8 svddGkstliGrllhdtkqile 29
                 vd Gk+tl   l+  +  i++
  MMETSP1061-20121228|3277_1 27 HVDHGKTTLTDSLVQKAGIISA 48
                5999999999999888777765 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 3.2e-05
   TIGR02034  84 vadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdyd 149
                 + d+PGh+ +  +++++   +d a+++vd+  Gv  qt      a l    + vl vnk+d    +
  MMETSP1061-20121228|3277_1 124 LIDSPGHVDFSSEVTAALRVTDGALVVVDTIDGVCVQTETVLRQA-LSERVKPVLMVNKVDRALLE 188
                 57************************************8655444.33333567889999965544 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.02
   TIGR02034 195 yeGptllevletveveesaeeeelrlpvqyvnrpnldfrGya.GtiasGsvkvGdevvvlp....sgres 259
                 y+Gp   ++  ++++ ++ +  ++ + v  ++    + r ya G + sG++++G++v+++     sg+++
  MMETSP1061-20121228|3277_1 376 YDGPLDDQTATAIRTCDTSDGAPMCMYVSKMIPTSDKGRFYAfGRVFSGKIATGQKVRIMGpnyvSGKKT 445
                 666666666667777778888888888888888888888887799*************985122244444 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.16        47     175     211 ..      19      55 ..       3      70 .. 0.83
   2 ?    8.9   0.0   0.00049      0.14     252     299 ..     138     185 ..     125     214 .. 0.68

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.16
   TIGR03594 175 pikiaiiGrpNvGKStLvNallgeervivsdiaGtTr 211
                    +++i     GK tL+ +l+++  +i  + aG  r
  MMETSP1061-20121228|3277_1  19 IRSMSVIAHVDHGKTTLTDSLVQKAGIISAKAAGGAR 55 
                 4578999999***************999999999665 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00049
   TIGR03594 252 lkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlv 299
                 + a++  d +l+v+D+ +g+  q +++++++l+e    v++vNK+D  
  MMETSP1061-20121228|3277_1 138 TAALRVTDGALVVVDTIDGVCVQTETVLRQALSERVKPVLMVNKVDRA 185
                 445666666777777777777777777777777777777777887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.65u 0.14s 00:00:00.79 Elapsed: 00:00:00.69
# Mc/sec: 1650.82
//
Query:       MMETSP1061-20121228|3281_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1926.22
//
Query:       MMETSP1061-20121228|3278_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1957.84
//
Query:       MMETSP1061-20121228|3282_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1823.53
//
Query:       MMETSP1061-20121228|3280_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-98  326.4   0.6    1.7e-68  228.5   0.0    2.5  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      4e-72  241.4   9.3    6.2e-57  191.2   0.1    2.7  3  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
      2e-64  215.8   0.8    6.2e-43  144.9   0.0    2.3  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      6e-22   75.7   0.4    3.6e-09   33.7   0.0    3.3  3  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    1.4e-21   74.4   0.0    2.8e-21   73.5   0.0    1.4  1  TIGR01068 thioredoxin: thioredoxin
    3.1e-16   57.0   6.2    1.3e-06   25.2   0.0    3.1  3  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    5.2e-16   56.5   2.8    2.2e-06   24.8   0.3    3.1  3  TIGR02053 MerA: mercuric reductase
    3.6e-14   51.0   3.2    5.6e-14   50.4   2.2    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    7.8e-14   49.1   3.1    1.6e-07   28.3   0.2    3.7  4  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    1.7e-13   48.6   0.0    3.8e-13   47.5   0.0    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.4e-12   43.7   4.3    2.2e-05   19.9   0.1    3.2  3  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    4.2e-11   40.1   1.6    2.6e-06   24.3   0.0    3.1  3  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    6.1e-09   32.8   7.2     0.0019   14.7   0.1    3.2  3  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    6.6e-09   32.9   2.8    0.00027   17.8   0.0    3.1  3  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    2.4e-08   30.7   0.4    8.6e-05   18.9   0.1    2.2  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    2.5e-08   31.4   4.2      0.019   12.0   0.0    3.2  3  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    2.7e-08   30.6   4.1    9.5e-05   18.9   0.1    2.9  3  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    3.1e-07   27.1   0.4    0.00035   17.0   0.1    2.2  2  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    1.5e-06   25.5   0.8     0.0041   14.2   0.1    3.2  3  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    9.6e-06   22.5   2.5       0.11    9.2   0.0    3.1  3  TIGR01438 TGR: thioredoxin and glutathione reductase
    9.9e-06   22.8   2.1      0.021   11.9   0.3    3.7  4  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    2.1e-05   21.4   2.8      0.017   11.8   1.9    3.6  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    2.3e-05   20.2   6.8     0.0025   13.4   0.5    3.1  3  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00012   19.8   6.3     0.0091   13.5   1.8    3.3  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00045   17.8   0.2     0.0084   13.6   0.0    2.4  2  TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain
    0.00046   17.0   4.3      0.052   10.2   0.3    2.5  2  TIGR03452 mycothione_red: mycothione reductase
    0.00065   16.1   5.8      0.045   10.0   0.1    2.7  3  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0011   15.1   3.2        0.2    7.7   0.0    2.6  2  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
     0.0018   16.2   0.0     0.0044   14.9   0.0    1.6  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
     0.0021   14.7   3.2      0.012   12.2   0.8    2.3  2  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0089   13.0   2.7       0.66    6.8   0.0    3.2  3  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
  ------ inclusion threshold ------
      0.019   11.8   4.1        0.2    8.4   0.4    2.6  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.035   10.6   3.6        1.7    5.1   0.0    3.2  3  TIGR00551 nadB: L-aspartate oxidase
      0.045   10.4   2.1       0.96    6.0   0.6    2.3  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.073   10.0   6.0       0.07   10.1   0.9    2.8  3  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.083    9.4   5.4       0.12    8.8   1.5    2.1  2  TIGR02734 crtI_fam: phytoene desaturase
      0.098    8.6   5.0       0.19    7.6   0.2    3.1  3  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
       0.12    9.2   3.1       0.66    6.8   0.5    2.8  3  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
       0.14    8.7   6.8       0.07    9.7   1.5    2.5  3  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
       0.38    7.0   6.0       0.41    6.9   0.7    3.0  4  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
       0.51    6.4   6.6       0.74    5.9   4.6    1.1  1  TIGR00596 rad1: DNA repair protein (rad1)
        3.1    4.8  14.2       0.17    9.0   3.3    2.8  3  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase


Domain annotation for each model (and alignments):
>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.7   4.6e+02       7      57 ..      58     112 ..      58     119 .. 0.61
   2 !  228.5   0.0   1.8e-70   1.7e-68       2     207 ..     318     522 ..     317     526 .. 0.97
   3 !   95.6   0.2   5.1e-30     5e-28     206     300 .]     573     670 ..     561     670 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 4.7
   TIGR01292   7 GaGpaGltaaiYaaran..lktlliegkeaggq..lttttevenyPGfkegisgs 57 
                 G Gp  + a iY + a+  ++ +++ + ++++q  l+ +  ++  P f+  + g 
  MMETSP1061-20121228|3280_1  58 GCGPCRMMAPIYKKVAKefVDKAVFVKVDTNAQheLSSKYRIQSLPTFQWYVGGR 112
                 7899999999998655422555555555555441155556777777776666555 PP

  == domain 2    score: 228.5 bits;  conditional E-value: 1.8e-70
   TIGR01292   2 dviiiGaGpaGltaaiYaaranlktlliegkeaggqltttt.evenyPGfkegisgselmekmkeqakkfgaeiileevkkvdkkerpfkvltedekeykakaviiAtGakarklgikgeeeflgrGvsyCavCDgalfknkevavvGggdsAveealyLskiakkVtlvhrrdklraekillerlkknekievllnstveeikGde 207
                 +v++iG+GpaG+++aiYaara+l++l+i   + ggql+ +  +venyPG ++  +g+ ++  m++qa +fga +  + v+++d ++rp+kv+ +++ + +a+++i+AtGa +++lgi+ge e+ g Gvs+Ca+CDg+lf +++v+vvGggd+A+e+al+L++ +kkVtl+hrrd++ra+k+l++r+k+++ ie+++n+++e i+G++
  MMETSP1061-20121228|3280_1 318 KVVVIGGGPAGMASAIYAARAGLTPLVIA-PAMGGQLQGKGvDVENYPGLHN-YTGPAVIAAMRAQAARFGAVFEDDFVTRIDGASRPLKVYGNSTGAIEAHSIIVATGADSKWLGIPGEFELRGGGVSSCATCDGFLFSGRHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTFRASKVLADRVKNHPLIEIQWNTVLETIEGKA 522
                 89**************************9.999****977659*******87.********************************************************************************************************************************************************86 PP

  == domain 3    score: 95.6 bits;  conditional E-value: 5.1e-30
   TIGR01292 206 dekvesvkikntktkeeeelkvdgvFiaiGhepntellkellel..deegyivvdee.mrTsveGvfaaGDvrdkslrQvvtaagdGaiAalsvekyl 300
                 ++ v++ ++k+++t+e+++l++d+vF+aiGh+pnt +l++ +e   d++gy+++  + ++Tsv+G++aaGDv+d ++rQ++t+ag+Ga+Aal++e+yl
  MMETSP1061-20121228|3280_1 573 EKIVSGAVLKDVVTGETRTLSCDAVFVAIGHSPNTGFLEGVVEFdpDHAGYVKTIGQsTKTSVPGIYAAGDVSDAVYRQAITSAGSGAAAALDAERYL 670
                 558999***********************************66511678*****9887**************************************98 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.4         5   4.8e+02     297     340 ..     181     229 ..     179     282 .. 0.51
   2 !  191.2   0.1   6.3e-59   6.2e-57       7     211 ..     319     524 ..     317     534 .. 0.95
   3 !   55.9   0.1   6.3e-18   6.1e-16     209     329 ..     574     694 ..     567     709 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 5
   TIGR03143 297 GaiaateleryvkelkeklG.....ieeayeeeeakekeekseeektpv 340
                 G+ia t + +  k+ k+k       + e  +e e+k++++ s++  ++ 
  MMETSP1061-20121228|3280_1 181 GSIANTLVYKLKKKYKTKPEtkklfVPEPKQEGEEKASSSSSSSSSSSS 229
                 6666666666666666555522222223333333333333333222222 PP

  == domain 2    score: 191.2 bits;  conditional E-value: 6.3e-59
   TIGR03143   7 lvviGgGpaglsaGiyagraklkvliiekdelGGqit.itsevvnyPgireitGeelmqemrkqaqdfgvkflqaevldvdleg.diktvktakgdlkalavliatGasprklGfeGeeeftGrGvaycatcdGefftGldvlviGgGfaaaeeavfltkyakkvtvivrepdftcakaiaekvkanPkievkfnvelkevtGddvl 211
                 +vviGgGpag+++ iya+ra l  l+i    +GGq++ +  +v+nyPg+++ tG++++ +mr+qa  fg+ f ++ v+ +d +   +k    + g ++a ++++atGa ++ lG +Ge e +G Gv+ catcdG +f G +vlv+GgG +a e+a+ l++ +kkvt+i r + f  +k++a++vk++P ie+++n+ l+ ++G++v 
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVIA-PAMGGQLQgKGVDVENYPGLHNYTGPAVIAAMRAQAARFGAVFEDDFVTRIDGASrPLKVYGNSTGAIEAHSIIVATGADSKWLGIPGEFELRGGGVSSCATCDGFLFSGRHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTFRASKVLADRVKNHPLIEIQWNTVLETIEGKAVS 524
                 89*************************7.579***984689****************************************76515777788899************************************************************************************************************9875 PP

  == domain 3    score: 55.9 bits;  conditional E-value: 6.3e-18
   TIGR03143 209 dvlreakfvnnatGeeteykakkdegtfGvfvfvGyvPsselfkgkveld..erGyvvtn.edletnveGvyaaGdlrvkelrqvvtavadGaiaateleryvkel...keklGieeayeeeeakek 329
                 +++  a +++ +tGe+ + +   d+    vfv +G+ P++  ++g+ve+d  ++Gyv t  ++ +t+v+G+yaaGd+     rq +t+   Ga aa ++ery+ e    +e++ +e ++ +e a+e 
  MMETSP1061-20121228|3280_1 574 KIVSGAVLKDVVTGETRTLS--CDA----VFVAIGHSPNTGFLEGVVEFDpdHAGYVKTIgQSTKTSVPGIYAAGDVSDAVYRQAITSAGSGAAAALDAERYLSEEglgNEEAEMEAELLRELANEM 694
                 66788999999999999988..555....*******************964378***99627899**************************************874112233334433333333333 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   0.0   6.4e-45   6.2e-43     213     417 ..     317     521 ..     296     528 .. 0.95
   2 !   69.2   0.1   5.7e-22   5.5e-20     418     511 ..     573     669 ..     549     673 .. 0.85

  Alignments for each domain:
  == domain 1    score: 144.9 bits;  conditional E-value: 6.4e-45
   TIGR03140 213 ydvlvvGgGPagaaaaiyaarkGlkvalvaeriGGqvk.dtvgienlisvkettGsklaanleehikeynidvleeqkvkkieteeeakevelesGevlkaksvivatGakWrelgvpGekeylgkGvayCphCdGPlfkgkkvaviGGGnsGieaaidlaGivehvtvlefadelkadkvlveklkslsnvdiltsaktkeivgd 417
                   v+v+GgGPag a+aiyaar Gl   ++a  +GGq +   v++en+ + ++ tG+ + a++++  +++   v+e   v++i+ ++   +v  +s   ++a+s+ivatGa  + lg+pGe e +g Gv+ C+ CdG lf g++v v+GGG++ +e a+ la   ++vt++   d+++a kvl +++k+++ ++i  ++  + i g+
  MMETSP1061-20121228|3280_1 317 EKVVVIGGGPAGMASAIYAARAGLTPLVIAPAMGGQLQgKGVDVENYPGLHNYTGPAVIAAMRAQAARFG-AVFEDDFVTRIDGASRPLKVYGNSTGAIEAHSIIVATGADSKWLGIPGEFELRGGGVSSCATCDGFLFSGRHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTFRASKVLADRVKNHPLIEIQWNTVLETIEGK 521
                 579*********************************983579**********************999998.699*****************9999999************************************************************************************************999988888775 PP

  == domain 2    score: 69.2 bits;  conditional E-value: 5.7e-22
   TIGR03140 418 gdkvtglkykdrsseeekkleldGvfvqiGlvpnteflkdavel..nrrGei.vidergrtsvkGifaaGdvttvpykqiiiamGeGakaalsafdy 511
                 ++ v+g  +kd  ++e+++l+ d vfv iG  pnt fl+++ve   ++ G +  i ++++tsv+Gi+aaGdv++ +y+q i + G Ga aal a  y
  MMETSP1061-20121228|3280_1 573 EKIVSGAVLKDVVTGETRTLSCDAVFVAIGHSPNTGFLEGVVEFdpDHAGYVkTIGQSTKTSVPGIYAAGDVSDAVYRQAITSAGSGAAAALDAERY 669
                 23489999*********************************9972257899845999***********************************99666 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.5   6.4e-06   0.00062       2      28 ..     319     345 ..     318     349 .. 0.94
   2 !   33.7   0.0   3.7e-11   3.6e-09      93     224 ..     394     523 ..     387     538 .. 0.75
   3 !   21.3   0.0   2.1e-07   2.1e-05     217     293 ..     573     649 ..     562     662 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 6.4e-06
   TIGR04018   2 viiiGaGPiGlaaaieakkaglsylii 28 
                 v++iG+GP G+a+ai a +agl+ l+i
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVI 345
                 89**********************998 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 3.7e-11
   TIGR04018  93 vekvkkkeekfevkt.ekeeyeakkvvvatGyydipnllnvpGedlpk...vshy.ykeahpyvkqkvvvvGgknsavdaalelyrkgaevtlvvrgeelsekvkyWvkpdlenrikeg.kikalfesevkeieeesv 224
                 v++++ +++  +v   ++ ++ea++++vatG     + l++pGe   +   vs     + + + +++v+vvGg + a++ al l r+  +vtl++r+++++++        l +r+k++  i++++++ +++ie ++v
  MMETSP1061-20121228|3280_1 394 VTRIDGASRPLKVYGnSTGAIEAHSIIVATGA--DSKWLGIPGEFELRgggVSSCaTCDGFLFSGRHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTFRAS------KVLADRVKNHpLIEIQWNTVLETIEGKAV 523
                 566666667777776466799**********7..57899****9543323376651569***************************************99865......23445555441456666666666666555 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 2.1e-07
   TIGR04018 217 keieeesvtletpegeveeiendfvlaltGyrpdlelleklgveleede.kipvydeetmEtnveglylaGvvaagle 293
                 ++i + +v  +  +ge++++++d v++ +G+ p++ +le + ve++ d+ +   +  ++  t+v+g+y aG v+ ++ 
  MMETSP1061-20121228|3280_1 573 EKIVSGAVLKDVVTGETRTLSCDAVFVAIGHSPNTGFLEGV-VEFDPDHaGYVKTIGQSTKTSVPGIYAAGDVSDAVY 649
                 56777778888889************************986.999999867777888999***********9987765 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   2.8e-23   2.8e-21       9      99 ..      42     132 ..      32     134 .. 0.91

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 2.8e-23
   TIGR01068   9 tvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeliek 99 
                   ++   +v+vDf+ + CgpC+m+aP+ +++ake  +k+ +vK+++++++e+++ky i+s+Pt   +  g++++++ G   +  l++l +k
  MMETSP1061-20121228|3280_1  42 HSTETGLPVVVDFYSDGCGPCRMMAPIYKKVAKEFVDKAVFVKVDTNAQHELSSKYRIQSLPTFQWYVGGRRIEEQKGGIGEGPLRQLTQK 132
                 44555679********************************************************************999999888888776 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   1.8   2.6e-05    0.0025       4      37 ..     319     351 ..     317     357 .. 0.85
   2 !   17.0   0.0   4.1e-06    0.0004     122     205 ..     407     491 ..     396     527 .. 0.80
   3 !   25.2   0.0   1.4e-08   1.3e-06     249     312 ..     585     648 ..     561     671 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.6e-05
   TIGR01350   4 vvviGgGpgGYvaAiraaqlglkvalvekeklGG 37 
                 vvviGgGp+G  +Ai aa++gl  +++    +GG
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVIA-PAMGG 351
                 9*********************988875.44555 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 4.1e-06
   TIGR01350 122 kkekkekkleakniiiAtGseprelplk..leedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldri 205
                  +++ +  +ea++ii+AtG++ + l ++  +e  +  v +  +   +    +++++vGgG   +E a ++a+   kvt+i   d+ 
  MMETSP1061-20121228|3280_1 407 YGNS-TGAIEAHSIIVATGADSKWLGIPgeFELRGGGVSSCATCDGFLFSGRHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTF 491
                 5554.4589**********99998777766999998999999999999999*****************************988764 PP

  == domain 3    score: 25.2 bits;  conditional E-value: 1.4e-08
   TIGR01350 249 kkkevetleaekvLvavGrkpnleelgle.klgveldergaik.vdeelrtnvpgiyaiGDvigkl 312
                   +e++tl+ ++v+va+G +pn+    le  ++++ d++g++k + ++++t+vpgiya GDv + +
  MMETSP1061-20121228|3280_1 585 VTGETRTLSCDAVFVAIGHSPNTG--FLEgVVEFDPDHAGYVKtIGQSTKTSVPGIYAAGDVSDAV 648
                 344899*****************9..56515799999*****736799**************9865 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00042     0.041       2      30 ..     318     346 ..     300     364 .. 0.76
   2 !   19.5   0.0   8.7e-07   8.5e-05     125     208 ..     411     495 ..     379     527 .. 0.79
   3 !   24.8   0.3   2.2e-08   2.2e-06     248     327 ..     585     665 ..     561     675 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00042
   TIGR02053   2 dlviiGsGaaafaaaikaaelgakvvlve 30 
                 ++v+iG+G a++a+ai aa+ g   +++ 
  MMETSP1061-20121228|3280_1 318 KVVVIGGGPAGMASAIYAARAGLTPLVIA 346
                 47888888888888888888887777765 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 8.7e-07
   TIGR02053 125 kevvgakrvliAtGarpavPeipGLkeae......yltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeep 208
                 +  ++a+ +++AtGa ++   ipG  e+         t + +l +    ++++v+Ggg  a+E a ++ar   +vtl++r ++  ++ ++
  MMETSP1061-20121228|3280_1 411 TGAIEAHSIIVATGADSKWLGIPGEFELRgggvssCATCDGFLFSG---RHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDT--FRASK 495
                 34556677****************9999966544444444444443...799****************************984..34444 PP

  == domain 3    score: 24.8 bits;  conditional E-value: 2.2e-08
   TIGR02053 248 kndskkeveadellvAtGRkpnvdgLn.LekvgvklderGei.lvdeklrtsnpkiyAAGDvikglqlesvA.akeGvvaAen 327
                 ++++++++  d+++vA G +pn+  L+ + + ++  d+ G + ++ +  +ts p+iyAAGDv + +  + +  a  G  aA  
  MMETSP1061-20121228|3280_1 585 VTGETRTLSCDAVFVAIGHSPNTGFLEgVVEFDP--DHAGYVkTIGQSTKTSVPGIYAAGDVSDAVYRQAITsAGSGAAAALD 665
                 345678999***************8875666666..999*9945999***************999765554414456666654 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   2.2   5.7e-16   5.6e-14       9     268 ..      33     292 ..      29     309 .. 0.66

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 5.7e-16
   TIGR01130   9 enfddlikenel.....vLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqsgPaskeletvedlekllekkevvvvgvfkd.ldselvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkkkkeeekeekveeeletdvealekfvkkeslplvgef..tketaakifeskplkvlllnveesk.kkseellekflevakkfkgkkv 268
                 ++fd l+k++ +     v+v FY   CG C+ +aP Y+k A+e  +k+   + +kvD ++++el++ky+++  Pt +++  g+++++ +G+  +  + +  +k    a+ + +++e+++ lle+ +     v  + +++++ + + ++  k++     +a++   +  kk+++k+++  l+ ++ ++e eek++++++++++  ++  k +s p  +++  ++++a+++ ++++++    n+ + + +++eell+++++   + ++++v
  MMETSP1061-20121228|3280_1  33 HEFDRLLKKHSTetglpVVVDFYSDGCGPCRMMAPIYKKVAKEFVDKA---VFVKVDTNAQHELSSKYRIQSLPTFQWYVGGRRIEEQKGGIGEGPLRQLTQK----AV-RQAETENVKLLLEDLKKFYAEVDPSkSEADIESVYGKCKGKKEFCQGSIANTLVYKLKKKYKTKPETKKLFVPEPKQEGEEKASSSSSSSSS-SSSSSKPTSSPTNNQRktQQQNANSRGSNSNNNKSKSNTPNLHlATKEELLAELEKRLDEERDQEV 292
                 5677777777654455599****************************9...899***********************************99877665444433....44.34557888888888555555555541555666667776666665566677777777788888888888888888887777777766665443.233333333333333300333333333332222222222222223467777777777776666655 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00072      0.07     133     157 ..     316     340 ..     294     351 .. 0.78
   2 ?   -1.1   0.0       1.4   1.4e+02     359     388 ..     399     428 ..     385     433 .. 0.76
   3 !    8.6   0.0    0.0016      0.15     269     305 ..     453     489 ..     444     509 .. 0.85
   4 !   28.3   0.2   1.6e-09   1.6e-07     352     449 .]     570     670 ..     558     670 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00072
   TIGR01316 133 kkkvaviGaGpaGlavaselakkGh 157
                  +kv viG GpaG+a a   a++G 
  MMETSP1061-20121228|3280_1 316 PEKVVVIGGGPAGMASAIYAARAGL 340
                 47999************99999996 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.4
   TIGR01316 359 sgekrkvpvtdeevkleadavivaiGqean 388
                    +   + +++   +ea ++iva G ++ 
  MMETSP1061-20121228|3280_1 399 GASRPLKVYGNSTGAIEAHSIIVATGADSK 428
                 444444466889999***********9875 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0016
   TIGR01316 269 vevgkkvvviGgGntavdaartalrlGaevhvvyrrt 305
                 +  g++v+v+GgG ta++ a    r   +v++++rr 
  MMETSP1061-20121228|3280_1 453 LFSGRHVLVVGGGDTAMEDALVLARTSKKVTLIHRRD 489
                 567999****************************985 PP

  == domain 4    score: 28.3 bits;  conditional E-value: 1.6e-09
   TIGR01316 352 elqeerdsgekrkvpvtdeevkleadavivaiGqeankiiaeds.slktskrGtiv.vdedletsieGvfaGGdvirGe.atvilalgdGkraakaideyl 449
                 +  e++ sg   k +vt+e  +l +dav vaiG+ +n    e+  ++   + G ++ + ++ +ts++G++a Gdv      + i + g G  aa   + yl
  MMETSP1061-20121228|3280_1 570 DDSEKIVSGAVLKDVVTGETRTLSCDAVFVAIGHSPNTGFLEGVvEFDPDHAGYVKtIGQSTKTSVPGIYAAGDVSDAVyRQAITSAGSGAAAALDAERYL 670
                 5567888888889999**********************99999889999999*985378999*************98761457888888888887777775 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   3.9e-15   3.8e-13       9      88 ..      42     117 ..      32     133 .. 0.84

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 3.9e-15
   TIGR01126   9 lvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdy 88 
                 + +++   v+v+fy+  CG C+ +aP y+k+ake+ ++    +  kvd++a++el+sk+ +++ Pt +++  g++  ++ 
  MMETSP1061-20121228|3280_1  42 HSTETGLPVVVDFYSDGCGPCRMMAPIYKKVAKEFVDK---AVFVKVDTNAQHELSSKYRIQSLPTFQWYVGGRR-IEEQ 117
                 4455566799**************************74...5899************************999986.4444 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   6.4e-05    0.0063     538     562 ..     317     341 ..     299     352 .. 0.87
   2 !   12.0   0.0   5.6e-05    0.0055     665     701 ..     455     489 ..     447     501 .. 0.87
   3 !   19.9   0.1   2.3e-07   2.2e-05     753     844 ..     582     678 ..     570     696 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.4e-05
   TIGR03315 538 hkvaviGaGPaGlsagyflaraGlp 562
                 +kv viG+GPaG++++ + araGl 
  MMETSP1061-20121228|3280_1 317 EKVVVIGGGPAGMASAIYAARAGLT 341
                 589********************86 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 5.6e-05
   TIGR03315 665 lGkrvvvvGgGntamdaaraalrvpGvekvtvvyrrt 701
                  G++v vvGgG+tam+ a    r+   +kvt+++rr 
  MMETSP1061-20121228|3280_1 455 SGRHVLVVGGGDTAMEDALVLART--SKKVTLIHRRD 489
                 59*************998887776..59*******96 PP

  == domain 3    score: 19.9 bits;  conditional E-value: 2.3e-07
   TIGR03315 753 rpvetgelveleadaviaavGeqvdtellkk.lgieldekgkvvvneetketsvtnvfviGdakkGP..ativeaiadgrka..akailsrenlnsd 844
                 + v tge+ +l  dav +a+G+  +t++l+  ++ + d+ g+v+   +++ tsv++++ +Gd++      +i +a +++ +a  a+  ls e+l ++
  MMETSP1061-20121228|3280_1 582 KDVVTGETRTLSCDAVFVAIGHSPNTGFLEGvVEFDPDHAGYVKTIGQSTKTSVPGIYAAGDVSDAVyrQAITSAGSGAAAAldAERYLSEEGLGNE 678
                 6799*************************962578889999999999999*************9753114555555544444223334677766655 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.9      0.46        45       1      18 [.     318     335 ..     318     340 .. 0.85
   2 !   11.6   0.0   0.00019     0.018     106     219 ..     418     520 ..     391     532 .. 0.74
   3 !   24.3   0.0   2.6e-08   2.6e-06     225     288 ..     585     650 ..     569     669 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.46
   TIGR03385   1 kivivGgvaaGasaAsrv 18 
                 k+v++Gg+ aG++ A  +
  MMETSP1061-20121228|3280_1 318 KVVVIGGGPAGMASAIYA 335
                 89**********998655 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00019
   TIGR03385 106 kLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekke.ielrlneevksveg 219
                  +i++tGA +k l i+g   +       +    + + +l   + ++v+v+GgG  ++e +  l +  k+vtli+r ++          +k++ ++++++  ie++ n  ++++eg
  MMETSP1061-20121228|3280_1 418 SIIVATGADSKWLGIPG---EFELRGGGVSSCATCDGFL--FSGRHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTF-------RASKVLADRVKNHPlIEIQWNTVLETIEG 520
                 57888888888888888...4334444678888888888..7889******************************9987.......34455666666654356666666666665 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 2.6e-08
   TIGR03385 225 vltsgkvyqaDlvilavGvkPnselikss.qlklgkkGaikv.nekfqtsveniyaiGDvaeskni 288
                 v  + ++ ++D+v +a+G  Pn+ +++   +   ++ G++k+  +  +tsv+ iya+GDv +  ++
  MMETSP1061-20121228|3280_1 585 VTGETRTLSCDAVFVAIGHSPNTGFLEGVvEFDPDHAGYVKTiGQSTKTSVPGIYAAGDVSDAVYR 650
                 3345678899*****************9325667899**98537899*************988776 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.4   0.00025     0.025     142     180 ..     317     353 ..     311     358 .. 0.85
   2 !   14.7   0.1   1.9e-05    0.0019     281     317 ..     455     490 ..     447     503 .. 0.86
   3 !    9.6   0.1   0.00065     0.063     358     461 ..     565     666 ..     548     672 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00025
   TIGR01318 142 krvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGll 180
                 ++v viG+GpaG+a a   araG    v    p++GG l
  MMETSP1061-20121228|3280_1 317 EKVVVIGGGPAGMASAIYAARAGLTPLVI--APAMGGQL 353
                 79*********************988775..46666665 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.9e-05
   TIGR01318 281 eGkrvvvlGGGdtamdcvrtairlgakkvtcvyrrde 317
                 +G++v+v+GGGdtam+     + +++kkvt ++rrd 
  MMETSP1061-20121228|3280_1 455 SGRHVLVVGGGDTAMEDALV-LARTSKKVTLIHRRDT 490
                 79*************86554.556789********96 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00065
   TIGR01318 358 klvrtklgepdakGrrraeivaGseavleadvviiafGfephamewlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGa.dlvvtavaeGrkaaegi 461
                 +   ++ +e   +G     +v+G    l  d+v +a G +p++       + + d+ G +++     ++++ts p i+a Gd+        +t+   G  aa + 
  MMETSP1061-20121228|3280_1 565 SAAADDDSEKIVSGAVLKDVVTGETRTLSCDAVFVAIGHSPNTGFLEGVVEFDPDHAGYVKTI---GQSTKTSVPGIYAAGDVSDAVyRQAITSAGSGAAAALDA 666
                 44555666667778888899********************98754444456777888888877...66789***********97654134566666676666655 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.2   0.00079     0.077     144     168 ..     317     341 ..     310     353 .. 0.89
   2 ?    4.1   0.0     0.037       3.7     143     171 ..     456     484 ..     449     505 .. 0.63
   3 !   17.8   0.0   2.7e-06   0.00027     386     479 ..     577     671 ..     563     675 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00079
   TIGR01317 144 kkvavvGsGPaGlaaadqlnraGht 168
                 +kv v+G GPaG+a+a   +raG t
  MMETSP1061-20121228|3280_1 317 EKVVVIGGGPAGMASAIYAARAGLT 341
                 699*******************976 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.037
   TIGR01317 143 GkkvavvGsGPaGlaaadqlnraGhtvtv 171
                 G++v vvG G + +  a  l+r+ ++vt+
  MMETSP1061-20121228|3280_1 456 GRHVLVVGGGDTAMEDALVLARTSKKVTL 484
                 44444555555555555555555555554 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 2.7e-06
   TIGR01317 386 dGkyeleevpgseevleadlvllalGfvgpeqallddlgvdkdergnikaeldesetsidGvfaaGdarrGq.slivwaineGreaaravdkylm 479
                 +G      v+g  ++l  d v++a+G       l   ++ d d+ g +k+  ++++ts++G++aaGd+        + +   G +aa + ++yl 
  MMETSP1061-20121228|3280_1 577 SGAVLKDVVTGETRTLSCDAVFVAIGHSPNTGFLEGVVEFDPDHAGYVKTIGQSTKTSVPGIYAAGDVSDAVyRQAITSAGSGAAAALDAERYLS 671
                 5665555678888999**********998888899999**********99999999***********9754312233333455555555667775 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   8.9e-07   8.6e-05     376     418 ..     313     353 ..     300     371 .. 0.84
   2 !    9.6   0.0   0.00056     0.055     380     414 ..     457     491 ..     441     516 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 8.9e-07
   TIGR03997 376 arrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqv 418
                  +++ kv+v+GgGPaG+++a+ aar G + +++  + ++GGq+
  MMETSP1061-20121228|3280_1 313 GSFPEKVVVIGGGPAGMASAIYAARAGLTPLVI--APAMGGQL 353
                 56679**********************877766..45677776 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00056
   TIGR03997 380 kkvlvvGgGPaGleaaataarrGhrvtllereeel 414
                 ++vlvvGgG + +e a   ar   +vtl+ r ++ 
  MMETSP1061-20121228|3280_1 457 RHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTF 491
                 89***************************998765 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.6    0.0047      0.46       5      47 ..     319     364 ..     317     395 .. 0.72
   2 !   11.2   0.0   0.00033     0.033     127     201 ..     413     491 ..     389     510 .. 0.77
   3 !   12.0   0.0    0.0002     0.019     234     308 ..     573     648 ..     563     683 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0047
   TIGR01421   5 ylviGGGsGGiasarraaeyGakallve...ekklGGtcvnvGcvP 47 
                 ++viGGG  G+asa  aa+ G   l++    + +l G  v+v   P
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVIApamGGQLQGKGVDVENYP 364
                 68*******************9999986111234555566665555 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00033
   TIGR01421 127 eytakhiliatGgkpsipeniPGa.el...glds....dgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrerv 201
                  ++a+ i++atG+ ++ + +iPG+ el   g++s    dgf+      ++v +vG G  a+e a vl     k  l+ rr++ 
  MMETSP1061-20121228|3280_1 413 AIEAHSIIVATGADSKWL-GIPGEfELrggGVSScatcDGFL---FSGRHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTF 491
                 389999***********9.***95354332333311114443...34678999************************999974 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.0002
   TIGR01421 234 ektveg.klvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyik.vdeyqntnvegiyalGdvvGkv 308
                 ek v+g  l+  ++  + + ++d++  aiG  pnt  l+   v+   d+ gy+k + +   t+v+giya Gdv   v
  MMETSP1061-20121228|3280_1 573 EKIVSGaVLKDVVTGETRTLSCDAVFVAIGHSPNTGFLE-GVVEFDPDHAGYVKtIGQSTKTSVPGIYAAGDVSDAV 648
                 5666663344455555778899************97775.579999*******84678899***********97654 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.2      0.71        69       5      25 ..     319     339 ..     315     352 .. 0.81
   2 !   11.3   0.0    0.0002     0.019     125     200 ..     410     490 ..     396     519 .. 0.82
   3 !   18.9   0.1   9.7e-07   9.5e-05     242     307 ..     584     649 ..     562     671 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.71
   TIGR01424   5 lfviGaGsGGvraarlaaalG 25 
                 + viG+G  G+++a +aa  G
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAG 339
                 569999999999999999888 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.0002
   TIGR01424 125 dgktytaekiliavGgrpvkpelPGa.el...aitsdeafd.letlPksilvvGgGyiavefagifrGlGvkvtllyrgek 200
                 ++ ++ a+ i++a+G+ ++   +PG  el   +++s    d +    +++lvvGgG  a+e a +++    kvtl++r+++
  MMETSP1061-20121228|3280_1 410 STGAIEAHSIIVATGADSKWLGIPGEfELrggGVSSCATCDgFLFSGRHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDT 490
                 45578899****************9545554456666666523345799*****************************986 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 9.7e-07
   TIGR01424 242 vtlskdeeivadvvllatGrvPnvkglgleaaGvelndagaia.vdeysrtsvpsiyavGdvtdrin 307
                 v++ +  ++ +d+v++a+G +Pn+  l+   +  + ++ag ++ + + ++tsvp+iya Gdv+d + 
  MMETSP1061-20121228|3280_1 584 VVTGETRTLSCDAVFVAIGHSPNTGFLE-GVVEFDPDHAGYVKtIGQSTKTSVPGIYAAGDVSDAVY 649
                 4556888999*************98775.34566777788886367888**************9875 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0022      0.22     125     223 ..     385     489 ..     379     499 .. 0.69
   2 !   17.0   0.1   3.6e-06   0.00035     264     336 ..     581     653 ..     560     666 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0022
   TIGR01423 125 fgaledknvvlvresadpkskv....kerldaeyillatgswpqmlkiegi.el...cissn...eafyleeapkrvltvgggyisvefagifnaykavggkvdlayrnd 223
                 fga+ +++ v+  ++a    kv       ++a  i++atg+  + l+i+g+ el    +ss    + f    + + vl+vggg  ++e a ++     +  kv+l++r d
  MMETSP1061-20121228|3280_1 385 FGAVFEDDFVTRIDGASRPLKVygnsTGAIEAHSIIVATGADSKWLGIPGEfELrggGVSSCatcDGFL--FSGRHVLVVGGGDTAMEDALVLAR---TSKKVTLIHRRD 489
                 788877777777777776666622113568999***************996322222233331002333..46899***********99987653...445777777766 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 3.6e-06
   TIGR01423 264 skhvvfesgkeldvdvvmlaigrlprsqtlqldkvgveladkgaik.vdeysktnvdniyaigdvtdrvmltpv 336
                  k vv    ++l  d v++aig  p +++l+   v  +  + g +k + + +kt v+ iya gdv+d v    +
  MMETSP1061-20121228|3280_1 581 LKDVVTGETRTLSCDAVFVAIGHSPNTGFLE-GVVEFDPDHAGYVKtIGQSTKTSVPGIYAAGDVSDAVYRQAI 653
                 47788888999******************97.46778888889888356788***************9976554 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.059       5.8     146     242 ..     317     426 ..     306     443 .. 0.55
   2 ?    4.1   0.0     0.047       4.6     147     188 ..     458     499 ..     454     541 .. 0.85
   3 !   14.2   0.1   4.2e-05    0.0041     220     282 ..     582     646 ..     549     661 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.059
   TIGR03169 146 kslavvGgGaagvElala..........lrkrlkkrglkaevslaseakllqalsakvrklvkrllakrgievlekeevtevede....alllaegetleadavllatgak 242
                 ++++v+GgG ag+  a+           ++ ++  + + + v++ + + l + + + v +++++  a+ g +v e+  vt++       ++  ++   +ea+ +++atga 
  MMETSP1061-20121228|3280_1 317 EKVVVIGGGPAGMASAIYaaragltplvIAPAMGGQLQGKGVDVENYPGLHNYTGPAVIAAMRAQAARFG-AVFEDDFVTRIDGAsrplKVYGNSTGAIEAHSIIVATGAD 426
                 689*********9766553333433332222222222223334444444444444444444433333333.3555555666554355555555666666666666666665 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.047
   TIGR03169 147 slavvGgGaagvElalalrkrlkkrglkaevslaseakllqa 188
                 +++vvGgG  ++E al l++  kk  l ++ + ++++k+l++
  MMETSP1061-20121228|3280_1 458 HVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTFRASKVLAD 499
                 689****************99999888776666666666655 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 4.2e-05
   TIGR03169 220 ealllaegetleadavllatgakapawLae..sglsldedGflavkktLqslshpevFaaGDcav 282
                 + ++++e +tl++dav++a+g ++ + + e   +++ d+ G +++  +   +s p ++aaGD+  
  MMETSP1061-20121228|3280_1 582 KDVVTGETRTLSCDAVFVAIGHSPNTGFLEgvVEFDPDHAGYVKTIGQSTKTSVPGIYAAGDVSD 646
                 3788999*****************9877661246666778***999999999**********974 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3     0.012       1.2       5      31 ..     319     345 ..     317     362 .. 0.85
   2 !    9.2   0.0    0.0011      0.11     142     217 ..     414     492 ..     397     544 .. 0.79
   3 ?    5.7   0.0     0.013       1.2     263     326 ..     588     650 ..     570     673 .. 0.72

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.012
   TIGR01438   5 liviGgGsGGlaaakeaaklgakvlll 31 
                 ++viGgG+ G+a+a  aa  g   l++
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVI 345
                 69****************998776665 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0011
   TIGR01438 142 lsakrvliatGlrpkypddieGakel...sitsddlfslkkvpG.ktlvvGasyvalecaGflaalgldvtvlvrsillr 217
                 + a+ +++atG   k+++ i+G+ el   +++s          G   lvvG++  a+e a  la  +++vt++ r   +r
  MMETSP1061-20121228|3280_1 414 IEAHSIIVATGADSKWLG-IPGEFELrggGVSSCATCDGFLFSGrHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTFR 492
                 67899************7.***98875544555444433333442589***********************999876666 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.013
   TIGR01438 263 ntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkle 326
                 +t +   d+v+ aiG ++++  l+   v+   ++      + +  +t+vp+iya Gd+ + +  
  MMETSP1061-20121228|3280_1 588 ETRTLSCDAVFVAIGHSPNTGFLE-GVVEFDPDHAGYVKTIGQSTKTSVPGIYAAGDVSDAVYR 650
                 455556789999999999987664.345566665555556778899************987654 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.3   0.00021     0.021      23      61 ..     318     354 ..     310     362 .. 0.83
   2 ?    6.2   0.0     0.012       1.2      22      54 ..     457     489 ..     447     518 .. 0.91
   3 ?   -1.7   0.0         3     3e+02      99     131 ..     557     589 ..     546     603 .. 0.70
   4 ?    0.9   0.0      0.48        47     189     227 ..     610     650 ..     598     668 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00021
   TIGR00292  23 DviivGaGpsGLtaayylakeglkvvvlerklaiGGGsw 61 
                  v+++G+Gp+G+++a y a++gl  +v+    a+GG   
  MMETSP1061-20121228|3280_1 318 KVVVIGGGPAGMASAIYAARAGLTPLVIAP--AMGGQLQ 354
                 599********************9999864..5566555 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.012
   TIGR00292  22 sDviivGaGpsGLtaayylakeglkvvvlerkl 54 
                   v++vG+G + +  a +la+   kv ++ r+ 
  MMETSP1061-20121228|3280_1 457 RHVLVVGGGDTAMEDALVLARTSKKVTLIHRRD 489
                 5799*************************9985 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 3
   TIGR00292  99 svevisklaskaldagvkilnavsveDlilrdd 131
                 +    s   ++a d + ki+ + ++ D+++ + 
  MMETSP1061-20121228|3280_1 557 ATPSASATSAAADDDSEKIVSGAVLKDVVTGET 589
                 44445555566666779***********99765 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.48
   TIGR00292 189 lgGekslyaekae..aallentrevvdnlyvaGmavaavdg 227
                 l+G    + ++a   +++ + t+  v+++y+aG  + av+ 
  MMETSP1061-20121228|3280_1 610 LEGVVEFDPDHAGyvKTIGQSTKTSVPGIYAAGDVSDAVYR 650
                 566667777888766789999************99999875 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   1.9   0.00018     0.017       1      23 [.     319     341 ..     319     348 .. 0.88
   2 ?    1.6   0.0      0.21        21     108     161 ..     374     427 ..     363     430 .. 0.81
   3 ?    3.1   0.0     0.074       7.3       1      33 [.     459     491 ..     459     498 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00018
   TIGR00275   1 viiiGgGaaGlmaAitaaeegak 23 
                 v++iGgG+aG+ +Ai aa++g+ 
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLT 341
                 79****************98865 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.21
   TIGR00275 108 vldaLlkelkelgvevlteskvksikkeeekfevet.ekkeleakkvilatGgks 161
                 v++a+  ++++ g+ v+ +  v+ i+   + ++v   +++ +ea+++i+atG  s
  MMETSP1061-20121228|3280_1 374 VIAAMRAQAARFGA-VFEDDFVTRIDGASRPLKVYGnSTGAIEAHSIIVATGADS 427
                 67777777777775.4456678889888888888887899************976 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.074
   TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkki 33 
                 v+++GgG   +  A+ +a++++kV+l+ +++ +
  MMETSP1061-20121228|3280_1 459 VLVVGGGDTAMEDALVLARTSKKVTLIHRRDTF 491
                 68*************************988764 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.5   2.6e-05    0.0025     171     218 ..     319     364 ..     315     435 .. 0.83
   2 ?    2.3   0.0     0.062         6     170     203 ..     458     491 ..     445     511 .. 0.90
   3 !    6.4   0.3    0.0035      0.34     386     487 ..     574     669 ..     542     699 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.6e-05
   TIGR01372 171 vLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllseaetidGkp 218
                 v+v+G+GpaG+a+A  AaraG+  +++   +++GG+l+ +   ++  p
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVI--APAMGGQLQGKGVDVENYP 364
                 89********************98887..5789999988877766655 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.062
   TIGR01372 170 DvLvvGaGpaGLaaAraAaraGarvilvdeqaea 203
                  vLvvG+G + +  A+  ar+  +v+l+  + ++
  MMETSP1061-20121228|3280_1 458 HVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTF 491
                 59*************************9887665 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0035
   TIGR01372 386 krvesvkvarvdlstaesgaeeeleaDallvsgGwsPvvhLasqakgklawdeeraaFlpde.avqelllaGAvnglfglaaaladga.aagaaaaeavgaeat 487
                 k v+++ +     ++  +g++++l +Da+ v+ G+sP     +  +g +++d ++a ++    + +++++ G  ++    +a+  ++  +ag+ aa a+ ae+ 
  MMETSP1061-20121228|3280_1 574 KIVSGAVL-----KDVVTGETRTLSCDAVFVAIGHSPNT---GFLEGVVEFDPDHAGYVKTIgQSTKTSVPGIYAAGDVSDAVYRQAItSAGSGAAAALDAERY 669
                 33333333.....34556999****************96...5679*************876333344444444433333344444431334444444444443 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.8   9.3e-05    0.0091       3      29 ..     319     345 ..     318     349 .. 0.92
   2 ?   -0.3   0.0       1.5   1.4e+02     100     150 ..     381     428 ..     376     431 .. 0.73
   3 ?    5.2   0.0     0.032       3.1       3      49 ..     459     506 ..     458     541 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9.3e-05
   TIGR02032   3 vvvvGaGpaGssaAlrlakkGlrVlll 29 
                 vvv+G+GpaG + A ++a++Gl+ l++
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVI 345
                 9********************987765 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.5
   TIGR02032 100 kAqeagaelllettvlsveiedekvkvevredekkevtakivigAdGaksk 150
                 +A++ ga  +++  v++  i++ ++ ++v +++ + ++a  +i A+Ga sk
  MMETSP1061-20121228|3280_1 381 QAARFGAV-FEDDFVTR--IDGASRPLKVYGNSTGAIEAHSIIVATGADSK 428
                 45555554.55556665..55567778888888999************997 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.032
   TIGR02032   3 vvvvGaGpaGssaAlrlakkGlrVlllekkelpre.keCggalskrav 49 
                 v+vvG+G      Al la+++ +V l+ +++  r+ k  ++ +++  +
  MMETSP1061-20121228|3280_1 459 VLVVGGGDTAMEDALVLARTSKKVTLIHRRDTFRAsKVLADRVKNHPL 506
                 89*******************************999998888887655 PP

>> TIGR01470  cysG_Nterm: siroheme synthase, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.1      0.47        46      10      43 ..     317     350 ..     316     356 .. 0.86
   2 !   13.6   0.0   8.6e-05    0.0084       8      52 ..     455     499 ..     452     517 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.47
   TIGR01470  10 kavlvvGggevalrKarlllkagAklrviaeele 43 
                 ++v+v+Ggg  +++ a   ++ag ++ via+ + 
  MMETSP1061-20121228|3280_1 317 EKVVVIGGGPAGMASAIYAARAGLTPLVIAPAMG 350
                 589**********999999999999999998775 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 8.6e-05
   TIGR01470   8 egkavlvvGggevalrKarlllkagAklrviaeeleaelkllaee 52 
                  g++vlvvGgg+ a++ a +l++++ k+++i ++ +  +++++++
  MMETSP1061-20121228|3280_1 455 SGRHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTFRASKVLAD 499
                 69***************************9988877777766665 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0027      0.26     169     204 ..     456     491 ..     388     521 .. 0.77
   2 !   10.2   0.3   0.00054     0.052     246     307 ..     586     647 ..     543     660 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0027
   TIGR03452 169 peslvivGgGyialefahvfsalGtkvtlvarsekl 204
                  +++++vGgG  a+e a v+     kvtl+ r +++
  MMETSP1061-20121228|3280_1 456 GRHVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTF 491
                 5899***************************99865 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00054
   TIGR03452 246 lddGstveadvllvatGrvpngdlldaeaaGvevdedgrvk.vdeyqrtsaegvfalGdvssp 307
                 + +  t+++d ++va+G  pn+  l+      + d++g vk + +  +ts+ g++a Gdvs+ 
  MMETSP1061-20121228|3280_1 586 TGETRTLSCDAVFVAIGHSPNTGFLEGV-VEFDPDHAGYVKtIGQSTKTSVPGIYAAGDVSDA 647
                 34567899***************99854.3456666777763678889************976 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.9    0.0042      0.41     371     401 ..     315     344 ..     304     444 .. 0.78
   2 !   10.0   0.1   0.00046     0.045     374     406 ..     458     490 ..     446     504 .. 0.88
   3 ?   -1.0   0.0         1     1e+02     572     593 ..     578     599 ..     566     612 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0042
   TIGR03996 371 tpgdvlvvGGGpaGleaarvlavrGhrvtla 401
                  p +v+v+GGGpaG+ +a   a +G    l+
  MMETSP1061-20121228|3280_1 315 FPEKVVVIGGGPAGMASAIYAARAGL-TPLV 344
                 6789***********88866655554.3344 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00046
   TIGR03996 374 dvlvvGGGpaGleaarvlavrGhrvtlaeasar 406
                 +vlvvGGG + +e a vla   ++vtl+ +   
  MMETSP1061-20121228|3280_1 458 HVLVVGGGDTAMEDALVLARTSKKVTLIHRRDT 490
                 79*************************988655 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1
   TIGR03996 572 glvledaytgersvlecavvid 593
                 g vl+d+ tge + l+c++v  
  MMETSP1061-20121228|3280_1 578 GAVLKDVVTGETRTLSCDAVFV 599
                 6789*************98854 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.4    0.0031       0.3       2      30 ..     318     346 ..     317     351 .. 0.89
   2 !    7.7   0.0    0.0021       0.2       2      30 ..     458     486 ..     457     493 .. 0.92

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0031
   TIGR00136   2 dviviGaGhaGieaalaaarlgaktlllt 30 
                 +v+viG+G aG+ +a+ aar g+  l+++
  MMETSP1061-20121228|3280_1 318 KVVVIGGGPAGMASAIYAARAGLTPLVIA 346
                 69********************9988876 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0021
   TIGR00136   2 dviviGaGhaGieaalaaarlgaktlllt 30 
                 +v+v+G+G   +e al+ ar++ k++l+ 
  MMETSP1061-20121228|3280_1 458 HVLVVGGGDTAMEDALVLARTSKKVTLIH 486
                 599***********************995 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.5e-05    0.0044       6      57 ..      54     105 ..      50     109 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.5e-05
   TIGR00411   6 ftsPtCPyCPkakkvveevakeegdkvevekinvmedlkkaleyGimavPai 57 
                 f s  C  C +   + ++vake+ dk+   k++++ +++ + +y i++ P+ 
  MMETSP1061-20121228|3280_1  54 FYSDGCGPCRMMAPIYKKVAKEFVDKAVFVKVDTNAQHELSSKYRIQSLPTF 105
                 77889*9*******************************************85 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.8   0.00012     0.012       2      28 ..     319     345 ..     318     354 .. 0.86
   2 ?    1.7   0.0      0.18        18     399     421 ..     626     648 ..     586     655 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00012
   TIGR01813   2 vvvvGsGlAGlsaaleakkaglaevvv 28 
                 vvv+G G AG+++a+ a +agl++ v+
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVI 345
                 9********************998887 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.18
   TIGR01813 399 VldensekpikgLfAaGEvtGgv 421
                  + + +++ ++g++AaG+v+  v
  MMETSP1061-20121228|3280_1 626 TIGQSTKTSVPGIYAAGDVSDAV 648
                 567788899**********9665 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.8      0.18        18       1      24 [.     319     342 ..     319     353 .. 0.85
   2 !    6.8   0.0    0.0068      0.66     148     210 ..     369     430 ..     361     442 .. 0.81
   3 ?    1.4   0.0      0.31        30       1      39 [.     459     496 ..     459     498 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.18
   TIGR02352   1 vlviGgGviGlsvAveLakrghkv 24 
                 v+viGgG  G++ A+++a++g   
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTP 342
                 79******************9865 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0068
   TIGR02352 148 vdprellkaLvkaleklGveiieevevqeieargekvtavktssekvqadqvvlaaGawakel 210
                    +++++a+++++++ G+ +++   v+ i+   +       s ++++a+++++a+Ga++k l
  MMETSP1061-20121228|3280_1 369 YTGPAVIAAMRAQAARFGAVFED-DFVTRIDGASRPLKVYGNSTGAIEAHSIIVATGADSKWL 430
                 56688999**********99998.788888888885555556667*************99865 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.31
   TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekdevgsgAska 39 
                 vlv+GgG   +  A+ La+  +kvtl+ +++   +Ask+
  MMETSP1061-20121228|3280_1 459 VLVVGGGDTAMEDALVLARTSKKVTLIHRRD-TFRASKV 496
                 79*************************9996.6677765 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.4    0.0021       0.2       2      30 ..     318     346 ..     317     352 .. 0.88
   2 ?   -3.0   0.0         6   5.8e+02     133     156 ..     405     428 ..     378     429 .. 0.62
   3 ?    3.8   0.0     0.052       5.1       2      32 ..     458     488 ..     457     493 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0021
   TIGR02023   2 dvlviGggpsGaaaaetLakagieville 30 
                 +v+viGggp+G a+a+  a+ag   +++ 
  MMETSP1061-20121228|3280_1 318 KVVVIGGGPAGMASAIYAARAGLTPLVIA 346
                 69********************9888776 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 6
   TIGR02023 133 keageekksveadvviGaDGaksk 156
                 k  g++  ++ea+++i a Ga sk
  MMETSP1061-20121228|3280_1 405 KVYGNSTGAIEAHSIIVATGADSK 428
                 445667788999999999999986 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.052
   TIGR02023   2 dvlviGggpsGaaaaetLakagievillere 32 
                 +vlv+Ggg +    a  La+++++v l+ r+
  MMETSP1061-20121228|3280_1 458 HVLVVGGGDTAMEDALVLARTSKKVTLIHRR 488
                 69**************************996 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.2     0.062         6       4      26 ..     318     340 ..     316     352 .. 0.82
   2 ?    5.1   0.0     0.017       1.7       4      43 ..     458     498 ..     455     501 .. 0.88
   3 ?    1.1   0.0      0.27        26     340     356 ..     629     645 ..     622     652 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.062
   TIGR00551   4 dvvviGsGaagLsaalalaekyr 26 
                 +vvviG+G ag++ a+ +a+++ 
  MMETSP1061-20121228|3280_1 318 KVVVIGGGPAGMASAIYAARAGL 340
                 79**************9999876 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.017
   TIGR00551   4 dvvviGsGaagLsaalalaekyr.vvvlskaevkesasvya 43 
                 +v+v+G+G  ++  al la++ + v+++ ++++  ++ v+a
  MMETSP1061-20121228|3280_1 458 HVLVVGGGDTAMEDALVLARTSKkVTLIHRRDTFRASKVLA 498
                 699****************99888*****998887777766 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.27
   TIGR00551 340 aygrtevkGLYaiGeva 356
                 + ++t+v+G+Ya+G+v+
  MMETSP1061-20121228|3280_1 629 QSTKTSVPGIYAAGDVS 645
                 5679**********998 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.6    0.0098      0.96       2      32 ..     319     348 ..     318     363 .. 0.80
   2 ?    3.4   0.0     0.064       6.2       1      37 [.     458     493 ..     458     504 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0098
   TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveak 32 
                 +v++GgG++G+a A+  a+ + l  ++++++
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAG-LTPLVIAPA 348
                 8**************998766.777777665 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.064
   TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalveakaaeka 37 
                 ++++vGgG + +  Al La+ + +kv+l+ ++++ +a
  MMETSP1061-20121228|3280_1 458 HVLVVGGGDTAMEDALVLARTS-KKVTLIHRRDTFRA 493
                 699****************877.******99987654 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.9   0.00071      0.07       2      31 ..     319     348 ..     318     354 .. 0.91
   2 ?   -1.6   0.0       2.6   2.5e+02      99     140 ..     387     427 ..     376     433 .. 0.77
   3 ?    0.6   0.0      0.54        53     116     164 ..     581     634 ..     561     692 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00071
   TIGR01790   2 liviGgGlAglaiAlelakpglrvqlieaa 31 
                 ++viGgG+Ag+a A   a++gl   +i++a
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVIAPA 348
                 79********************99999875 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2.6
   TIGR01790  99 vlwleakaikveadavslslvecaggqriqarlVidargfka 140
                  ++ +  + +++ ++  l+ v+++    i+a ++i+a+g+ +
  MMETSP1061-20121228|3280_1 387 AVFEDDFVTRIDGASRPLK-VYGNSTGAIEAHSIIVATGADS 427
                 5677777888888844444.9999999************976 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.54
   TIGR01790 116 lslvecaggqriqarlVidargfka...lvq..yekaslavgfQaayGvevrls 164
                 l+ v +++ +++++ +V +a g+++   +++   e  ++++g+ + +G+ ++ s
  MMETSP1061-20121228|3280_1 581 LKDVVTGETRTLSCDAVFVAIGHSPntgFLEgvVEFDPDHAGYVKTIGQSTKTS 634
                 4447888999**************977655411344577888888888777665 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   1.5    0.0013      0.12       1      54 [.     319     375 ..     319     390 .. 0.73
   2 ?    1.3   0.0      0.23        22       1      32 [.     459     490 ..     459     497 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0013
   TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekr..dkpGGRagvleed.GfrfDtGPtvi 54 
                 +vViG+G +G+A+Ai  a+aG +  v+      ++ G+   +e+  G +  tGP+vi
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVIAPAmgGQLQGKGVDVENYpGLHNYTGPAVI 375
                 79*******************998887543114555565555554566666666666 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.23
   TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdk 32 
                 ++V+G+G   +  A+ La+   +vt++ +rd+
  MMETSP1061-20121228|3280_1 459 VLVVGGGDTAMEDALVLARTSKKVTLIHRRDT 490
                 68****************************97 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0019      0.19       5      31 ..     319     345 ..     316     349 .. 0.90
   2 ?   -0.6   0.0       0.6        59       5      32 ..     459     486 ..     457     499 .. 0.86
   3 ?    0.4   0.1       0.3        29     334     382 ..     595     645 ..     573     700 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0019
   TIGR01816   5 vvvvGaGGaGlraalelakeglktavv 31 
                 vvv+G+G aG+ +a+++a++gl   v+
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVI 345
                 89*******************987776 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.6
   TIGR01816   5 vvvvGaGGaGlraalelakeglktavvt 32 
                 v+vvG+G + +  al la++  k++ + 
  MMETSP1061-20121228|3280_1 459 VLVVGGGDTAMEDALVLARTSKKVTLIH 486
                 79*****************999988775 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.3
   TIGR01816 334 dpvkdpipvlPtvhylmGGipt..nlkGqvlrdadgndsiveGlyavGeaa 382
                 d+v   i   P + +l G +    +  G v + +++++++v+G+ya+G+++
  MMETSP1061-20121228|3280_1 595 DAVFVAIGHSPNTGFLEGVVEFdpDHAGYVKTIGQSTKTSVPGIYAAGDVS 645
                 555555555566666666554311456777777888899999999999876 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.5    0.0067      0.66       2      29 ..     318     345 ..     317     384 .. 0.89
   2 ?   -1.7   0.0       2.6   2.5e+02     179     200 ..     409     430 ..     389     434 .. 0.81
   3 ?    1.0   0.1       0.4        39       2      35 ..     458     491 ..     457     497 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0067
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvi 29 
                 +vvv+G+G  G+a A+ aar Gl+  vi
  MMETSP1061-20121228|3280_1 318 KVVVIGGGPAGMASAIYAARAGLTPLVI 345
                 69*********************98887 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.6
   TIGR03364 179 tsrGevhaeqvlVcsgadfetL 200
                 +s G++ a+ ++V +gad + L
  MMETSP1061-20121228|3280_1 409 NSTGAIEAHSIIVATGADSKWL 430
                 6889999***********9876 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.4
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvierssra 35 
                  v+vvG+G   +  Al  ar  +kVt+i r ++ 
  MMETSP1061-20121228|3280_1 458 HVLVVGGGDTAMEDALVLARTSKKVTLIHRRDTF 491
                 589**************************98865 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   1.5   0.00072      0.07       4      34 ..     319     349 ..     317     369 .. 0.84
   2 ?   -0.5   0.0      0.89        87     127     194 ..     371     430 ..     365     433 .. 0.72
   3 ?   -1.4   0.0       1.6   1.6e+02       3      30 ..     458     485 ..     455     489 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00072
   TIGR02485   4 vlviGgGlaglCaaiearraGasvllleaaP 34 
                 v+viGgG ag+ +ai a+raG + l++  a 
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVIAPAM 349
                 89*******************9998887665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.89
   TIGR02485 127 GkalvnalyasaerlGveiryeaeveriereedgratiaarlaaaderiatkavvlaaGGlganreWl 194
                 G a++ a+ a+a r+G     +  v ri+  +  +  +      ++  i ++++++a+G   a+ +Wl
  MMETSP1061-20121228|3280_1 371 GPAVIAAMRAQAARFGAVF-EDDFVTRIDG-ASRPLKVYG---NSTGAIEAHSIIVATG---ADSKWL 430
                 7899999999999999655.5567888887.333333333...4467899999999986...667776 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.6
   TIGR02485   3 dvlviGgGlaglCaaiearraGasvlll 30 
                  vlv+GgG +++  a+  +r+   v l+
  MMETSP1061-20121228|3280_1 458 HVLVVGGGDTAMEDALVLARTSKKVTLI 485
                 599********99999988888877765 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.7    0.0042      0.41       2      29 ..     319     346 ..     318     349 .. 0.90
   2 ?    0.6   0.0      0.32        31       2      39 ..     459     496 ..     458     504 .. 0.86
   3 ?   -1.4   0.0       1.3   1.3e+02     159     188 ..     573     602 ..     566     609 .. 0.88
   4 ?   -3.5   0.0       5.9   5.7e+02     355     371 ..     629     645 ..     618     647 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0042
   TIGR01812   2 vvivGaGlAGlraAveaakkglkvavis 29 
                 vv++G+G AG+ +A+ aa++gl   vi+
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVIA 346
                 89******************99877775 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.32
   TIGR01812   2 vvivGaGlAGlraAveaakkglkvaviskvyptRsHsv 39 
                 v++vG+G   +  A+ +a+++ kv +i +    R+  v
  MMETSP1061-20121228|3280_1 459 VLVVGGGDTAMEDALVLARTSKKVTLIHRRDTFRASKV 496
                 79***********************9988777776555 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.3
   TIGR01812 159 dkevkGvvaidlktgevvvlrakavvlatG 188
                 +k v G+v+ d+ tge+ +l+  av +a G
  MMETSP1061-20121228|3280_1 573 EKIVSGAVLKDVVTGETRTLSCDAVFVAIG 602
                 66799*********************9988 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 5.9
   TIGR01812 355 lenesivkGlfaaGEaa 371
                 +++++ v G++aaG+++
  MMETSP1061-20121228|3280_1 629 QSTKTSVPGIYAAGDVS 645
                 3356789*******976 PP

>> TIGR00596  rad1: DNA repair protein (rad1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   4.6    0.0075      0.74     326     432 ..     185     298 ..     159     321 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0075
   TIGR00596 326 kfllrklrqyrkqreklkkl.akevkkkeaakenassr...vnktlrkek..vaskrrrvrgakeaaveklreeetdevqvvekdeeleee...ldeleegeaaeeeaandskife 432
                 + l+ kl++  k++ ++kkl + e k++ ++k  +ss+    +++++k++  +++++r+  ++++ a ++ ++++ ++ ++ + + +l+++   l ele++ ++e + + +   f+
  MMETSP1061-20121228|3280_1 185 NTLVYKLKKKYKTKPETKKLfVPEPKQEGEEKASSSSSsssSSSSSSKPTssPTNNQRK--TQQQNANSRGSNSNNNKSKSNTPNLHLATKeelLAELEKRLDEERDQEVEGEDFD 298
                 45667888888888888888766655543333333222112333333332113333333..4444444555555555555555555554442334555555333333333332333 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.3    0.0018      0.17       1      35 [.     319     351 ..     319     358 .. 0.87
   2 ?    0.4   0.0      0.67        66       1      31 [.     459     489 ..     459     499 .. 0.93
   3 ?   -0.5   0.4       1.3   1.3e+02     392     425 ..     631     663 ..     619     666 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0018
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGG 35 
                 vvv+GgG AG+a A+  araG+   ++  ++++GG
  MMETSP1061-20121228|3280_1 319 VVVIGGGPAGMASAIYAARAGLTPLVI--APAMGG 351
                 89*******************999886..556666 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.67
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarr 31 
                 v+vvGgG   +  A+ Lar+  +vtl+ +r 
  MMETSP1061-20121228|3280_1 459 VLVVGGGDTAMEDALVLARTSKKVTLIHRRD 489
                 79************************99886 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1.3
   TIGR03467 392 artplpnlfLAGDwtatgyPATlEgAvrSGvqAA 425
                 ++t++p+++ AGD  ++ y   + +A  SG +AA
  MMETSP1061-20121228|3280_1 631 TKTSVPGIYAAGDVSDAVYRQAITSA-GSGAAAA 663
                 78*************99999888766.5777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                      196  (0.0477816); expected 82.0 (0.02)
Passed Vit filter:                        82  (0.0199902); expected 4.1 (0.001)
Passed Fwd filter:                        42  (0.0102389); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              42  [number of targets reported over threshold]
# CPU time: 0.78u 0.14s 00:00:00.92 Elapsed: 00:00:00.81
# Mc/sec: 1183.01
//
Query:       MMETSP1061-20121228|3283_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-21   72.3   0.0    1.4e-20   71.6   0.0    1.3  1  TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
    1.4e-06   26.1   0.0    2.2e-06   25.5   0.0    1.3  1  TIGR00185 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
    0.00077   17.2   0.0     0.0028   15.4   0.0    1.8  1  TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1


Domain annotation for each model (and alignments):
>> TIGR00186  rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.6   0.0     1e-23   1.4e-20      74     236 ..     182     355 ..     136     358 .. 0.81

  Alignments for each domain:
  == domain 1    score: 71.6 bits;  conditional E-value: 1e-23
   TIGR00186  74 eikeleledlvktakskkapllliLdeitDphNlGailRtAealgvdgv..vlkkr....rsapltstvvktssGalellplvrvtnlsetltklke.sgfwivgtsleaeetkyekkktk....klaLvvGnEgkGvrklikkksDflikipmagkvdSLNvSVAtgillfei 236
                  i++  le + +++k++ +    + ++   p N+ a+lRt + +g + v  v++      ++a  ++  +++++G+++ l l + + + e+++++++ +g+ i++++l+ ++++ +  + +    ++ +v+GnE++G+++ +++ +D   ++pm g  +S N+SVAt i l ++
  MMETSP1061-20121228|3283_1 182 WINKDRLERISGVLKQRTKRSKFLFENPSNPSNVWACLRTIDSFGLQNVdlVIESGryagKQAVSQKKGMRVAMGSAQWLTLTNHATTKEAIEHIRDvQGYKIYASDLNPNSKDVRDIDWDaddrPVCIVMGNEDRGISQEMRELADETFTLPMCGFAESFNLSVATSITLAHM 355
                 466667777777777777556666788999**************976544455554022245556667799*************************989**************665554444555********************************************99765 PP

>> TIGR00185  rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.6e-09   2.2e-06      40     142 ..     246     353 ..     203     363 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 1.6e-09
   TIGR00185  40 ddkrlkraGldywefvelvehksleefleaekekka..lflltkkG.tpdhisvkykdtd...ylvfGqetkGlPkslldelaeqklriPlteevrslnlsnavavvly 142
                   k+  r  +   ++  l++h + +e +e+ ++ ++  +++   +  ++d  +++ +  d    +v+G+e +G+ +++++   +++  +P+   + s+nls a +++l 
  MMETSP1061-20121228|3283_1 246 SQKKGMRVAMGSAQWLTLTNHATTKEAIEHIRDVQGykIYASDLNPnSKDVRDIDWDADDrpvCIVMGNEDRGISQEMRELA-DETFTLPMCGFAESFNLSVATSITLA 353
                 44555677777889999***************99973344433333345555666666668899**************9987.999******************99985 PP

>> TIGR00050  rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     2e-06    0.0028      11     166 ..     208     368 ..     200     382 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2e-06
   TIGR00050  11 epktsgNvGsiARamknmGleeLilvnpkv..leeeayalaagakdilenakvv.....ddldealddldlvvgTsarsralkkvlltPreladkllakkgkvalvFGREdsGLtNEElekcdvlvsiptseeYpslNlsqAvavilYelreaklvqeekled 166
                 +p+++ Nv +  R +  +Gl++  lv        ++a  +  g +  +  a+ +      + +ea++++  v g  +    l+    + r++     a    v +v G Ed G++ E  e++d   ++p+     s+Nls A  + l ++   +   +++++d
  MMETSP1061-20121228|3283_1 208 NPSNPSNVWACLRTIDSFGLQNVDLVIESGryAGKQAVSQKKGMRVAMGSAQWLtltnhATTKEAIEHIRDVQGYKIYASDLNPNSKDVRDIDWD--ADDRPVCIVMGNEDRGISQEMRELADETFTLPMCGFAESFNLSVATSITLAHMSASSYHCKDSDSD 368
                 78888888888999999999887666433223555555554444444444443200000455566666666555555555555555554444322..455689******************************************999985555554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1685.69
//
Query:       MMETSP1061-20121228|3286_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|3284_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 2120.07
//
Query:       MMETSP1061-20121228|3285_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.20s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1406.37
//
Query:       MMETSP1061-20121228|3279_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 1333.09
//
Query:       MMETSP1061-20121228|3288_1  [L=754]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.50
# Mc/sec: 1990.40
//
Query:       MMETSP1061-20121228|3289_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1481.21
//
Query:       MMETSP1061-20121228|3290_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-14   49.6   0.2      2e-11   41.7   0.0    2.2  2  TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU
    1.4e-09   35.9   0.2    6.2e-08   30.5   0.0    2.2  2  TIGR03341 YhgI_GntY: IscR-regulated protein YhgI


Domain annotation for each model (and alignments):
>> TIGR02000  NifU_proper: Fe-S cluster assembly protein NifU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   9.5e-15     2e-11     222     283 ..     257     321 ..     207     330 .. 0.79
   2 !    5.9   0.0   0.00078       1.6     221     261 ..     343     384 ..     335     397 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 9.5e-15
   TIGR02000 222 qkiekvleelrPtlqadgGdvelldvd..gkevkvkltGacsgcsssaatlki.iqqklverlge 283
                  ++ kvl+e+rP l+ dgG+v +  vd   k+v+++l+Gac++c ss++t+++ i+  l e+ + 
  MMETSP1061-20121228|3290_1 257 DNVDKVLDEIRPYLISDGGNVSVDRVDeeTKSVYLVLEGACGSCPSSTVTMQMgIERVLKENFAD 321
                 57999***************988666622689*******************98899999987544 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00078
   TIGR02000 221 iqkiekvleelrPtlqadgGdvelldvdg.kevkvkltGacs 261
                 +q +ek ++ ++P ++a gG v++l+vd+  ++k+++ Ga  
  MMETSP1061-20121228|3290_1 343 YQVVEKEVNRIKPAIIAMGGLVDILEVDAiGTIKLRFRGANK 384
                 57899999********************83578899888865 PP

>> TIGR03341  YhgI_GntY: IscR-regulated protein YhgI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0     3e-11   6.2e-08     107     181 ..     256     330 ..     238     343 .. 0.85
   2 !    3.6   0.0    0.0055        11     116     147 ..     351     382 ..     334     395 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 3e-11
   TIGR03341 107 eerieyvlqseinPqlaahGGevslveitddevav.lkfgGGcnGcsavdvtlkegvekellekipelkgvkdatd 181
                 ++ ++ vl  ei P l + GG+vs+  + +++  v l + G c  c    vt++ g+e+ l+e++++l +v  + d
  MMETSP1061-20121228|3290_1 256 KDNVDKVL-DEIRPYLISDGGNVSVDRVDEETKSVyLVLEGACGSCPSSTVTMQMGIERVLKENFADLGEVLQVDD 330
                 56777777.59*****************99987664899***************************9988876655 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0055
   TIGR03341 116 seinPqlaahGGevslveitddevavlkfgGG 147
                 ++i P + a GG v ++e+   +++ l+f G 
  MMETSP1061-20121228|3290_1 351 NRIKPAIIAMGGLVDILEVDAIGTIKLRFRGA 382
                 4677*****************9*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1552.81
//
Query:       MMETSP1061-20121228|3291_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 3291.48
//
Query:       MMETSP1061-20121228|3294_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.19s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 359.56
//
Query:       MMETSP1061-20121228|3292_1  [L=1145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-05   18.1   0.1    0.00014   17.6   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.4e-08   0.00014     311     437 ..     561     696 ..     545     746 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3.4e-08
   TIGR03903 311 deeldalerslltrcadiavryGahvggaLGdtlLfyfGypsaierdarraaRaalelvrsa...grkaeeaageekwrveiaaaihvGsvlaea.shasg.....gstadvalrlqalaepGqilvseaarklLr 437
                  e++  l + ++ ++ +ia+r+G     ++Gd  +   G+p+a e+ a   aR a++   ++   g++ e a g     + ++ ++h G v     ++ ++     g t++ a+r++ +     i +s  +++lL 
  MMETSP1061-20121228|3292_1 561 PEQVFHLLETVYGAMDQIAMRRGVFKVETVGDCYVAVCGLPEAREDHAVAMARFARDCQLRMvslGQQLEIALGPDTADLSFRIGMHSGPVTGGVlRGQNArfqlfGDTMNQASRMESTGVKNRIQMSVTTARLLI 696
                 455556788999999***************************************99965444111566677777788889999999988776433133333556789*********************99999884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.50
# Mc/sec: 3022.55
//
Query:       MMETSP1061-20121228|3297_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-05   22.1   0.1      0.016   12.6   0.0    3.4  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0021   15.6   0.7        0.4    8.2   0.0    3.6  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0027   15.7   0.2        2.9    6.1   0.0    3.7  3  TIGR00756 PPR: pentatricopeptide repeat domain
     0.0056   15.1   0.1        2.6    6.5   0.0    3.1  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
  ------ inclusion threshold ------
      0.051   10.9   0.3       0.71    7.1   0.0    2.8  3  TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.23   1.9e+02     172     194 ..     267     289 ..     264     306 .. 0.78
   2 !   12.6   0.0   1.9e-05     0.016     113     212 ..     278     382 ..     274     392 .. 0.73
   3 ?    0.4   0.0       0.1        84      29      59 ..     389     419 ..     377     424 .. 0.62
   4 !    4.6   0.0    0.0053       4.3     134     166 ..     438     470 ..     431     508 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.23
   TIGR02521 172 llelaelklkkgqyaeAraller 194
                 l e a+  +++g+y eA +++e 
  MMETSP1061-20121228|3297_1 267 LHETAKAAMNDGDYYEALQMFEA 289
                 67778888888888888888764 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.9e-05
   TIGR02521 113 kkyeeAeqqfeaAiedp.......kYeqparsyeNaglcalkagdtekaekyltralkidpkrpes.llelaelklkkgqyaeAralleryqqtveqtaesLwLgiri 212
                 ++y eA q+fea ++++       +  +  +++ N+g++ l++g+  kae+++ ral i+++  es  l+la       ++ +Ar +l ++ + + +  e+L++  ++
  MMETSP1061-20121228|3297_1 278 GDYYEALQMFEAILRAQvdrfgsdEHSSVGAALHNVGVVRLRIGEPLKAEEAFLRALTIRRNVLESdHLDLA---ATLAKLGSARTALGKFDDGLYDLREALKISLNV 382
                 67778888887766654222211144556689*****************************98777245555...556677788888888888888888888776655 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.1
   TIGR02521  29 kaakirvqLaleYleqgdlekAkenlekAle 59 
                 ++a+i    a  Y+e+g+l +A+   e+ le
  MMETSP1061-20121228|3297_1 389 TVAQILCHIACLYFEAGELFSAQSTFEDSLE 419
                 4455555555666666666666555555554 PP

  == domain 4    score: 4.6 bits;  conditional E-value: 0.0053
   TIGR02521 134 parsyeNaglcalkagdtekaekyltralkidp 166
                   +++ N+g ++ k +++  a +++++al++++
  MMETSP1061-20121228|3297_1 438 LTETLCNIGSIQNKRKHFSGAIESFREALYLQR 470
                 568999***********************9987 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00049       0.4      20     105 ..     266     361 ..     264     367 .. 0.61
   2 ?    0.9   0.0     0.093        77      63     115 ..     409     461 ..     400     471 .. 0.78
   3 ?    1.5   0.0     0.061        50      58      81 ..     487     510 ..     473     527 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00049
   TIGR02552  20 aiYalAYnlyqqgkyeeAeklFqlL..aaldpteakywlgLaaclq.......alkeyeeAiaaYalaaaldldd.prpvyhaaecllalgekeeA 105
                 +++++A ++++ g+y eA+++F++   a++d + ++ + + +a+l+       + +e  +A +a+ +a++++++   + ++ +a  l +lg  + A
  MMETSP1061-20121228|3297_1 266 ELHETAKAAMNDGDYYEALQMFEAIlrAQVDRFGSDEHSSVGAALHnvgvvrlRIGEPLKAEEAFLRALTIRRNVlESDHLDLAATLAKLGSARTA 361
                 578899999*************98723456666666666666655511111114456667777777777776553134455555555555555555 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.093
   TIGR02552  63 qalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaiei 115
                  a++ +e+ +++Y   +++++d  + + ++ e l ++g  ++ +k + +aie 
  MMETSP1061-20121228|3297_1 409 SAQSTFEDSLEIYRGVFKVEPDRDACMAQLTETLCNIGSIQNKRKHFSGAIES 461
                 56777788888888888888888888888888888888888888888888875 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.061
   TIGR02552  58 LaaclqalkeyeeAiaaYalaaal 81 
                 La ++ + k y++A+ +Y+  +++
  MMETSP1061-20121228|3297_1 487 LAYSFSKSKLYNQALTCYKGMLSA 510
                 566666667777777777655544 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.29   2.4e+02      12      26 ..     276     290 ..     272     294 .. 0.81
   2 !    6.1   0.0    0.0035       2.9       8      31 ..     489     512 ..     483     514 .. 0.88
   3 ?    4.3   0.0     0.014        11       9      25 ..     532     548 ..     530     552 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.29
   TIGR00756  12 kagrveeAlelfdeM 26 
                 + g++ eAl++f+ +
  MMETSP1061-20121228|3297_1 276 NDGDYYEALQMFEAI 290
                 679999******866 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0035
   TIGR00756   8 sglckagrveeAlelfdeMkergi 31 
                  +++k++ ++ Al +++ M+++ i
  MMETSP1061-20121228|3297_1 489 YSFSKSKLYNQALTCYKGMLSAEI 512
                 689****************99876 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.014
   TIGR00756   9 glckagrveeAlelfde 25 
                  ++k ++v++A+e+  +
  MMETSP1061-20121228|3297_1 532 VYGKLKKVDDAVEVVSK 548
                 79***********9876 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0032       2.6       3      30 ..     265     292 ..     263     367 .. 0.75
   2 !    5.1   0.0    0.0089       7.3      43     100 ..     402     463 ..     399     467 .. 0.78
   3 ?   -2.3   0.0       1.8   1.5e+03      50      67 ..     492     509 ..     477     552 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0032
   TIGR02795   3 eaeykaallvlkegdYakAeqaFkaFlk 30 
                 ++  + a+ ++++gdY +A q F+a l+
  MMETSP1061-20121228|3297_1 265 RELHETAKAAMNDGDYYEALQMFEAILR 292
                 567789999**************99875 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0089
   TIGR02795  43 YwlGealyakkkykdAakaflevvkkypkse....kapdallklgeslqelgqkekAkktlq 100
                 +  Ge++ a++ ++d+ + ++ v+k  p+ +    +  + l ++g+++++ ++ + A + ++
  MMETSP1061-20121228|3297_1 402 FEAGELFSAQSTFEDSLEIYRGVFKVEPDRDacmaQLTETLCNIGSIQNKRKHFSGAIESFR 463
                 5579*********************9999861111456777888888888888888777766 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.8
   TIGR02795  50 yakkkykdAakaflevvk 67 
                  + k y++A + ++ +++
  MMETSP1061-20121228|3297_1 492 SKSKLYNQALTCYKGMLS 509
                 444445555555554444 PP

>> TIGR03302  OM_YfiO: outer membrane assembly lipoprotein YfiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.55   4.5e+02     137     158 ..     164     185 ..     139     190 .. 0.75
   2 ?    7.1   0.0   0.00087      0.71      34      60 ..     265     291 ..     255     296 .. 0.90
   3 ?   -0.2   0.0      0.15   1.2e+02      74     197 ..     395     422 ..     383     467 .. 0.54

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.55
   TIGR03302 137 afeelirryPnSeYaadakkrl 158
                 +  +l ++ P+S++ +da++r 
  MMETSP1061-20121228|3297_1 164 SSGDLTNQNPSSRHNTDARQRR 185
                 446799999*********9986 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00087
   TIGR03302  34 eelYeeaeeelekgnykeAikkfeele 60 
                  el e+a++++++g+y eA + fe++ 
  MMETSP1061-20121228|3297_1 265 RELHETAKAAMNDGDYYEALQMFEAIL 291
                 68999*******************996 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.15
   TIGR03302  74 LdlayayYksgeyeeAlaaadrFiklyPnhedvdyalYliglsnykqidrvdrDqkaakeAleafeelirryPnSeYaadakkrlkelrnrLAekElevarfYlkrgayvAAinRfeevlenYp 197
                   +a  y+++ge+ +A++++++ +++y                                                                                                +
  MMETSP1061-20121228|3297_1 395 CHIACLYFEAGELFSAQSTFEDSLEIY------------------------------------------------------------------------------------------------R 422
                 444444444444444444444444444................................................................................................3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.39
# Mc/sec: 2084.75
//
Query:       MMETSP1061-20121228|3296_1  [L=1038]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1038 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.52
# Mc/sec: 2634.71
//
Query:       MMETSP1061-20121228|3300_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 640.39
//
Query:       MMETSP1061-20121228|3306_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|3303_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1541.29
//
Query:       MMETSP1061-20121228|3308_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|3304_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-34  117.0   0.0    2.6e-21   74.0   0.0    3.0  2  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
    6.4e-27   92.7   0.0    2.1e-13   48.4   0.0    2.3  2  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
    4.9e-14   50.2   0.0    2.3e-08   31.6   0.0    2.2  2  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
    1.8e-10   38.9   0.0    0.00021   19.3   0.0    2.3  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    2.3e-10   38.4   0.0    1.3e-06   26.2   0.0    2.2  2  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    6.1e-09   33.5   0.2      9e-05   19.9   0.1    2.3  2  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
    4.1e-08   30.7   0.0     0.0014   15.9   0.1    2.2  2  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
    1.9e-07   28.6   0.0    4.7e-07   27.3   0.0    1.6  2  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
    7.4e-07   27.0   0.0     0.0045   14.6   0.0    2.3  2  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
    7.4e-07   26.7   0.0     0.0017   15.7   0.0    2.2  2  TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
    1.4e-06   26.3   0.0     0.0036   15.2   0.0    2.3  2  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
    5.7e-06   23.9   0.3      0.022   12.2   0.0    2.3  2  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
    0.00024   19.4   0.2      0.074   11.3   0.1    3.0  3  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
    0.00075   16.3   0.0      0.008   12.9   0.0    2.1  2  TIGR01456 CECR5: HAD hydrolase, TIGR01456 family
     0.0012   16.6   0.2        0.2    9.4   0.0    2.8  3  TIGR03351 PhnX-like: phosphonatase-like hydrolase
     0.0017   15.8   0.1       0.53    7.6   0.1    2.2  2  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
  ------ inclusion threshold ------
       0.02   11.3   0.2      0.029   10.8   0.1    1.1  1  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent


Domain annotation for each model (and alignments):
>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.0   1.1e-23   2.6e-21       1      85 [.      91     176 ..      91     183 .. 0.93
   2 !   38.8   0.0   5.9e-13   1.4e-10     185     241 ..     328     387 ..     201     388 .. 0.71

  Alignments for each domain:
  == domain 1    score: 74.0 bits;  conditional E-value: 1.1e-23
   TIGR01459   1 iedliedYdvFLlDlwGvvidGqeayPGavealaklkaegktvylvsnssksvaeleatlkklGia.adlfegivssGevavrsid 85 
                 i++l++dYdvFLlD+wGv++dG ++y G+ e + +lka+gk  +++snssk+  +    l klG+   d f  i++sGeva + + 
  MMETSP1061-20121228|3304_1  91 IGKLADDYDVFLLDMWGVMHDGIKPYEGVPEVVRELKAAGKKLIILSNSSKRRSNSVEMLGKLGFSpEDDFSEIITSGEVAHHLLR 176
                 6899************************************************9999999******84689***********98665 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 5.9e-13
   TIGR01459 185 elGGkviyvGkPypaifdkalkel...eerekrrvllvGDslvtDiaganavgidtalvl 241
                 e+  ++   GkP   ++d+al  +   ++ ++ rv++vGD+l+tD++ga a+gid+++v 
  MMETSP1061-20121228|3304_1 328 EKDDRILSLGKPFSGVYDIALSSIigsDDDDRSRVVMVGDALETDVTGATAAGIDSIWVV 387
                 555678899************986443678999*************************96 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   8.8e-16   2.1e-13       1      77 [.     101     177 ..     101     183 .. 0.87
   2 !   42.1   0.0   7.6e-14   1.8e-11     186     243 ..     327     386 ..     248     388 .. 0.74

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 8.8e-16
   TIGR01460   1 flfDidGVlvrgkkpipgalealnrlrakgkpvvfvTNnsgrseedlaeklssllgv..dvspeqiitshsvtkellkk 77 
                 fl+D +GV+++g kp++g++e +++l+a+gk++++++N+s + +++  e l + lg+  + + ++iits++v+ +ll++
  MMETSP1061-20121228|3304_1 101 FLLDMWGVMHDGIKPYEGVPEVVRELKAAGKKLIILSNSS-KRRSNSVEMLGK-LGFspEDDFSEIITSGEVAHHLLRY 177
                 89*************************************9.777777777887.6652278889*************95 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 7.6e-14
   TIGR01460 186 eksgreeivvGKPspalykaaeellkarakrr..kvlmvGDnlrtDvlgAkeaGldslLv 243
                 ++++ ++ ++GKP   +y++a++++   ++    +v+mvGD l+tDv gA +aG+ds++v
  MMETSP1061-20121228|3304_1 327 REKDDRILSLGKPFSGVYDIALSSIIGSDDDDrsRVVMVGDALETDVTGATAAGIDSIWV 386
                 344555679**************997655544469************************9 PP

>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   9.7e-11   2.3e-08       3      80 ..      99     177 ..      97     194 .. 0.85
   2 !   16.6   0.0   3.7e-06    0.0009     163     253 ..     291     394 ..     269     418 .. 0.65

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 9.7e-11
   TIGR01452   3 etfifdcdGvlWlGekvvpGaPelldrlakagkkvlfvtnnstksraeyakklaklGlnsvae..elvssalvaaaller 80 
                 + f++d  Gv+  G k  +G+Pe++  l+ agkk+++++n s k r++ ++ l klG++   +  e+++s  va +ll+ 
  MMETSP1061-20121228|3304_1  99 DVFLLDMWGVMHDGIKPYEGVPEVVRELKAAGKKLIILSNSS-KRRSNSVEMLGKLGFSPEDDfsEIITSGEVAHHLLRY 177
                 789**********************************99765.6699999********8655333888888888887775 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3.7e-06
   TIGR01452 163 vatnrdevtplsdeseipgaGslv......aaiktasgrep..lvvGkPs....dfmleyikeklsidPartlmvGdrletdilfGkdgGlktvlvls.Gvsrl 253
                 v  n d+v p +d+s +pg+  ++      a  + a +++   l +GkP     d +l  i  + + d +r++mvGd letd+     +G+  + v+  G+++ 
  MMETSP1061-20121228|3304_1 291 VVCNPDKVRPDADKSPMPGTIGVAyqelleANRDDAREKDDriLSLGKPFsgvyDIALSSIIGSDDDDRSRVVMVGDALETDVTGATAAGIDSIWVVNdGIHNQ 394
                 4467777888777777777754441111111122222222133789999622224567777777888999*********************9998764388742 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   8.6e-07   0.00021      21      63 ..     110     150 ..      97     153 .. 0.88
   2 !   17.2   0.0   3.6e-06   0.00087      93     140 ..     338     388 ..     330     389 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 8.6e-07
   TIGR01662  21 edeaelypevidalaelkkeGykvvivtNqsgigrgkesveev 63 
                 +d +++y++v++ ++elk++G+k++i++N+s  +r+ +sve++
  MMETSP1061-20121228|3304_1 110 HDGIKPYEGVPEVVRELKAAGKKLIILSNSS--KRRSNSVEML 150
                 677899*************************..8888888875 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 3.6e-06
   TIGR01662  93 Kpktgmleealkrln...eidakesvvvGDavltDleaakrvGlatvlvas 140
                 Kp  g ++ al+ ++   + d +++v+vGDa+ tD+++a ++G   ++v++
  MMETSP1061-20121228|3304_1 338 KPFSGVYDIALSSIIgsdDDDRSRVVMVGDALETDVTGATAAGIDSIWVVN 388
                 888888888888888666667899***********************9975 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00046      0.11      85     147 ..     105     171 ..      84     173 .. 0.79
   2 !   26.2   0.0   5.4e-09   1.3e-06     169     205 ..     361     398 ..     334     409 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00046
   TIGR02253  85 ylklklaylkvypdvvkvLleLresGyrlgliTdgltek..qweklerlgv..rdfFdavivseelg 147
                 ++ +    +k+y +v +v  eL+++G +l ++ ++ ++     e l +lg   +d F ++i+s+e++
  MMETSP1061-20121228|3304_1 105 MWGVMHDGIKPYEGVPEVVRELKAAGKKLIILSNSSKRRsnSVEMLGKLGFspEDDFSEIITSGEVA 171
                 67766677799***********************766541134566666653345699****99986 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 5.4e-09
   TIGR02253 169 eavmvGDrlekDikGaknlglktvwinrgkskkee.dd 205
                   vmvGD le+D+ Ga ++g+ ++w+ + + +++e dd
  MMETSP1061-20121228|3304_1 361 RVVMVGDALETDVTGATAAGIDSIWVVNDGIHNQEiDD 398
                 47***********************9999888877444 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00016     0.039      45      73 ..     116     143 ..     104     154 .. 0.80
   2 !   19.9   0.1   3.7e-07     9e-05     109     143 ..     360     395 ..     338     414 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00016
   TIGR01668  45 apalkewieelkaaGlkllivSNnageqr 73 
                 ++ + e + elkaaG+kl+i+SN+ ++ r
  MMETSP1061-20121228|3304_1 116 YEGVPEVVRELKAAGKKLIILSNSSKR-R 143
                 566678999**************9953.3 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 3.7e-07
   TIGR01668 109 eqvvvvGDrlfTDvllgnrnGsltilv.eplvhpde 143
                 + vv+vGD l TDv ++   G+ +i+v ++++h +e
  MMETSP1061-20121228|3304_1 360 SRVVMVGDALETDVTGATAAGIDSIWVvNDGIHNQE 395
                 679***********************7257777776 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   5.5e-05     0.013       4      82 ..     101     176 ..      98     180 .. 0.87
   2 !   15.9   0.1   5.7e-06    0.0014     174     224 ..     333     387 ..     328     414 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.5e-05
   TIGR01458   4 vlldisGvlydsdaksgvavpgsaeavkrlkraslkvrfvtnekkeskrelverlqrlgfdisee..evitpapaaaqllk 82 
                 +lld+ Gv++d +        g  e v+ lk a  k+  ++n++k+ + + ve l +lgf   ++  e+it+  +a +ll+
  MMETSP1061-20121228|3304_1 101 FLLDMWGVMHDGIK----PYEGVPEVVRELKAAGKKLIILSNSSKR-RSNSVEMLGKLGFSPEDDfsEIITSGEVAHHLLR 176
                 89********9998....66777899********999999998765.78899********98876669****999999887 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 5.7e-06
   TIGR01458 174 aevvGkPskeffkealral.Gvepe...eavmiGddlvddvGGaqavGmrgvqvr 224
                 ++ +GkP    +  al ++ G + +   ++vm+Gd l  dv Ga a G+ ++ v 
  MMETSP1061-20121228|3304_1 333 ILSLGKPFSGVYDIALSSIiGSDDDdrsRVVMVGDALETDVTGATAAGIDSIWVV 387
                 678899999999999987537765422269*******************999875 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.6   8.7e+02      94     123 ..     111     141 ..     104     170 .. 0.69
   2 !   27.3   0.0     2e-09   4.7e-07     151     201 ..     337     391 ..     334     404 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.6
   TIGR02254  94 ekarllpgAlelleaLkkk.lrlyivtnGvr 123
                 +  +  +g  e++ +Lk    +l i++n  +
  MMETSP1061-20121228|3304_1 111 DGIKPYEGVPEVVRELKAAgKKLIILSNSSK 141
                 5555567778899999988788999999654 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 2e-09
   TIGR02254 151 ekPdkkiFafaleri....klkkeevlmvGDsleaDikGaanaGldtvwlnpdrk 201
                  kP  ++++ al  i    +  +++v+mvGD le+D++Ga+ aG+d++w+  d  
  MMETSP1061-20121228|3304_1 337 GKPFSGVYDIALSSIigsdDDDRSRVVMVGDALETDVTGATAAGIDSIWVVNDGI 391
                 5888888888888876433346799************************977753 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00044      0.11     105     157 ..     114     171 ..     109     173 .. 0.84
   2 !   14.6   0.0   1.9e-05    0.0045     158     203 .]     336     385 ..     332     385 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00044
   TIGR02252 105 kvvedlekllkklreeglklgvvSNfDsrlr...klLealgl..eelfdfvvvSaevg 157
                 k +e++ +++++l+++g+kl ++SN  +r     ++L +lg+  e+ f+ +++S ev 
  MMETSP1061-20121228|3304_1 114 KPYEGVPEVVRELKAAGKKLIILSNSSKRRSnsvEMLGKLGFspEDDFSEIITSGEVA 171
                 5689999*******************99865222578999997788899999999985 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 1.9e-05
   TIGR02252 158 aeKPdpkIFekaleklg....ikpeevlhiGDslekDvegakaaGlrall 203
                 + KP   ++++al ++        + v+ +GD le+Dv ga aaG+++++
  MMETSP1061-20121228|3304_1 336 LGKPFSGVYDIALSSIIgsddDDRSRVVMVGDALETDVTGATAAGIDSIW 385
                 56888899999999998777777889**********************98 PP

>> TIGR01457  HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00081       0.2       1      54 [.      98     150 ..      98     178 .. 0.84
   2 !   15.7   0.0   7.2e-06    0.0017     175     230 ..     335     395 ..     292     404 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00081
   TIGR01457   1 ykGylidldGtlykGkekieeavefvkelkkrdvpylfvtnnstrtpesvaell 54 
                 y  +l+d+ G ++ G +  e   e v+elk  +   + ++n s r  +sv+ +l
  MMETSP1061-20121228|3304_1  98 YDVFLLDMWGVMHDGIKPYEGVPEVVRELKAAGKKLIILSNSSKRRSNSVE-ML 150
                 788*****************************9998888888888888775.44 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 7.2e-06
   TIGR01457 175 viGkpeaiilekalkrl.Gt...ekeetllvGdnyatdilaGidaGidtllv.htGvtkke 230
                  +Gkp + + + al  + G    +++ +++vGd  +td+     aGid++ v + G+ ++e
  MMETSP1061-20121228|3304_1 335 SLGKPFSGVYDIALSSIiGSdddDRSRVVMVGDALETDVTGATAAGIDSIWVvNDGIHNQE 395
                 5799999999999876436522257889********************9865156666554 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.5e-05    0.0036      90     124 ..     113     147 ..     104     172 .. 0.81
   2 !    8.7   0.0    0.0014      0.35     147     191 ..     338     387 ..     336     392 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.5e-05
   TIGR01428  90 LepfpdvaagLkkLkerglklviLsNgstatlksl 124
                 ++p+  v+++ ++Lk++g kl+iLsN+s+   +s+
  MMETSP1061-20121228|3304_1 113 IKPYEGVPEVVRELKAAGKKLIILSNSSKRRSNSV 147
                 689************************99876654 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0014
   TIGR01428 147 KPapkvYelalealgvk....peevllvasna.wDlkgAkklGlktvwvn 191
                 KP   vY++al ++  +    +++v++v      D++gA+++G+ ++wv 
  MMETSP1061-20121228|3304_1 338 KPFSGVYDIALSSIIGSddddRSRVVMVGDALeTDVTGATAAGIDSIWVV 387
                 777788888888875554666899****988879**************95 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   9.1e-05     0.022      72     129 ..     111     172 ..      99     174 .. 0.83
   2 !    9.3   0.1    0.0007      0.17     146     173 ..     357     385 ..     337     402 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.1e-05
   TIGR01454  72 gevevfegvpellaelradglgtaiatgksgprarsl..lealgllel..ldevigsdevar 129
                 + ++ +egvpe++ el+a g ++ i +  s  r+ s+  l +lg+ +   + e+i s eva+
  MMETSP1061-20121228|3304_1 111 DGIKPYEGVPEVVRELKAAGKKLIILSNSSKRRSNSVemLGKLGFSPEddFSEIITSGEVAH 172
                 66889*********************999999988854488888876444889999999985 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0007
   TIGR01454 146 vaaeaavmvgdal.idlasaraagvaava 173
                     ++vmvgdal +d++ a aag+ ++ 
  MMETSP1061-20121228|3304_1 357 DDRSRVVMVGDALeTDVTGATAAGIDSIW 385
                 456789******769*********98864 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.046        11      66      95 ..     118     149 ..     103     169 .. 0.79
   2 ?   -0.6   0.0       1.4   3.4e+02      54      76 ..     261     283 ..     242     286 .. 0.79
   3 !   11.3   0.1   0.00031     0.074     112     149 .]     337     380 ..     323     380 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.046
   TIGR01549  66 dakellkel..agyrlgiiSngslraqklllr 95 
                 ++ e+++el  ag++l+i+Sn s+r+++ ++ 
  MMETSP1061-20121228|3304_1 118 GVPEVVRELkaAGKKLIILSNSSKRRSNSVEM 149
                 55666665522699**********99887765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 1.4
   TIGR01549  54 lqgleaeeayledakellkelag 76 
                  ++ ++eeay++ +k++l+++++
  MMETSP1061-20121228|3304_1 261 ADKKRDEEAYWAAYKDVLERASK 283
                 55678899999999999999876 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00031
   TIGR01549 112 sKpepeiflaalesl.....glepevlhvGDn.lsDieaaknag 149
                 +Kp + ++++al s+     +  ++v++vGD+ ++D+ +a +ag
  MMETSP1061-20121228|3304_1 337 GKPFSGVYDIALSSIigsddDDRSRVVMVGDAlETDVTGATAAG 380
                 5777777777777773333333468****************998 PP

>> TIGR01456  CECR5: HAD hydrolase, TIGR01456 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.14        35       3      32 ..     101     130 ..     100     165 .. 0.86
   2 !   12.9   0.0   3.3e-05     0.008     222     300 ..     327     397 ..     286     411 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.14
   TIGR01456   3 falDiDGvllrGkkpiagaskalrrLvdds 32 
                 f+lD+ Gv+  G kp  g ++ +r L    
  MMETSP1061-20121228|3304_1 101 FLLDMWGVMHDGIKPYEGVPEVVRELKAAG 130
                 89**********************998773 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 3.3e-05
   TIGR01456 222 tgkpLeyeslGkPskltykyaedvlkeiekrlagskqsaapfkklymvGDnPksDiiGarqaglfsil.vktgvydgkde 300
                 ++k+ +  slGkP   +y+ a   ++  +              ++ mvGD   +D+ Ga  ag+ si+ v+ g+++++ +
  MMETSP1061-20121228|3304_1 327 REKDDRILSLGKPFSGVYDIALSSIIGSDD---------DDRSRVVMVGDALETDVTGATAAGIDSIWvVNDGIHNQEID 397
                 566667778888888888888777772222.........2234689******************9997257899987644 PP

>> TIGR03351  PhnX-like: phosphonatase-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00081       0.2      86     142 ..     113     171 ..     105     175 .. 0.82
   2 ?   -1.8   0.0       2.2   5.2e+02      87     134 ..     196     245 ..     187     250 .. 0.67
   3 ?    3.5   0.2     0.053        13     150     197 ..     346     394 ..     335     403 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00081
   TIGR03351  86 vvalpGveeairdLrskGikvaL..ttGfdrevaeklleklgWsvgedvDavvtssdva 142
                 ++  +Gv e++r+L++ G k  +  +    r+   ++l klg+s ++d   ++ts +va
  MMETSP1061-20121228|3304_1 113 IKPYEGVPEVVRELKAAGKKLIIlsNSSKRRSNSVEMLGKLGFSPEDDFSEIITSGEVA 171
                 67889*************9976512333445566789******************9997 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.2
   TIGR03351  87 valpGveeairdLrskGikvaLttGfdrevaeklleklgWsvged...vDa 134
                 +++p +  a+rd  ++G+  a   G + +  e  le+ gW+  e    +D 
  MMETSP1061-20121228|3304_1 196 REIPEAFSALRDANKEGLLSAYCFG-SGDGDEDYLESCGWNLAESietADL 245
                 5555566666666667777777766.5567788899999998876333555 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.053
   TIGR03351 150 liyralertgvqdvrsvlvaGDt.anDleaginagatlvvGvltGasda 197
                 +++ ++  +  +d ++v+++GD+ ++D++ +++ag+  +  v  G +++
  MMETSP1061-20121228|3304_1 346 IALSSIIGSDDDDRSRVVMVGDAlETDVTGATAAGIDSIWVVNDGIHNQ 394
                 566677777888999*******9457*********99887777777765 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0081         2      82     125 ..     111     156 ..      97     173 .. 0.77
   2 !    7.6   0.1    0.0022      0.53     159     185 ..     360     387 ..     352     404 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0081
   TIGR01449  82 eltsvfpgveaaleaLrakGlrlglvtn..kPealarplLellgla 125
                 ++ ++++gv + ++ L+a+G +l +  n  k ++ ++++L  lg++
  MMETSP1061-20121228|3304_1 111 DGIKPYEGVPEVVRELKAAGKKLIILSNssKRRSNSVEMLGKLGFS 156
                 56789*********************99556677788888888876 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0022
   TIGR01449 159 aqmvyvGDs.evDiaaArAAGlpsvllt 185
                   +v+vGD  e+D+  A AAG+ s+ + 
  MMETSP1061-20121228|3304_1 360 SRVVMVGDAlETDVTGATAAGIDSIWVV 387
                 5789****8579**********998654 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00012     0.029     214     276 ..     361     423 ..     348     437 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00012
   TIGR02819 214 avvivgdlneerlaqarsfgcetvdlkkdatlaeqieqilgepevdaavdavgfeakghgsds 276
                  vv+vgd  e  ++ a + g++ + + +d   ++ i++   + e  + v   gf+a++ g+ +
  MMETSP1061-20121228|3304_1 361 RVVMVGDALETDVTGATAAGIDSIWVVNDGIHNQEIDDAASTLEGGCEVVLEGFNARSEGTYA 423
                 589********************************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1869.14
//
Query:       MMETSP1061-20121228|3307_1  [L=1095]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-11   39.2   0.1    2.2e-10   37.6   0.0    1.7  2  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    6.1e-09   33.3   0.0    1.1e-08   32.5   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
      1e-07   29.5   0.3    1.7e-07   28.8   0.2    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    5.1e-06   23.3   0.2    8.3e-06   22.6   0.1    1.3  1  TIGR02734 crtI_fam: phytoene desaturase
    8.1e-06   22.8   0.0    1.6e-05   21.8   0.0    1.4  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    6.1e-05   18.4   0.0    8.2e-05   18.0   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    8.4e-05   19.9   0.0    0.00016   19.0   0.0    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00011   18.6   0.0    0.00017   17.9   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00028   19.0   0.0    0.00067   17.8   0.0    1.6  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00067   16.4   0.1    0.00067   16.4   0.1    1.5  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0019   14.7   0.0     0.0032   14.0   0.0    1.3  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0022   14.7   0.1     0.0034   14.0   0.1    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0022   15.1   0.7      0.012   12.8   0.0    2.4  3  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0024   14.5   0.1     0.0035   13.9   0.1    1.2  1  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0029   14.0   0.1     0.0048   13.3   0.0    1.2  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0037   13.8   0.1     0.0073   12.8   0.1    1.4  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
     0.0045   14.1   0.1     0.0074   13.4   0.1    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0058   13.1   0.0     0.0089   12.5   0.0    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0059   13.5   0.4      0.011   12.7   0.3    1.4  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0083   13.0   0.1      0.016   12.1   0.0    1.4  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
  ------ inclusion threshold ------
      0.011   12.3   0.5      0.017   11.7   0.3    1.2  1  TIGR02731 phytoene_desat: phytoene desaturase
      0.016   11.5   0.6      0.034   10.5   0.0    1.6  2  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
      0.022   11.4   0.1      0.035   10.7   0.1    1.3  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.028   11.2   0.1      0.059   10.2   0.0    1.5  2  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
      0.034   10.8   0.1      0.057   10.1   0.0    1.3  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.048   10.8   0.5       0.11    9.6   0.0    1.7  2  TIGR00755 ksgA: dimethyladenosine transferase
      0.049   10.1   0.0      0.087    9.3   0.0    1.3  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      0.051   10.9   0.0        2.1    5.6   0.0    2.2  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
      0.082    9.9   0.1        5.9    3.8   0.0    2.3  2  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0   1.5e-12   2.2e-10       3      46 ..      10      52 ..       8      60 .. 0.94
   2 ?   -1.9   0.0       1.4     2e+02     223     297 ..     237     317 ..     224     323 .. 0.64

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 1.5e-12
   TIGR00562  3 kkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyTr 46
                kkv+v+GgG+sGL++a+ l+ +    ++v++Ea+dR GG+ yT+
  MMETSP1061-20121228|3307_1 10 KKVAVIGGGVSGLSAAWHLSEN-STADVVVFEAEDRLGGHAYTV 52
                79******************98.899****************98 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.4
   TIGR00562 223 lalakgLetlpeevekrlkekk.vkvvkgekvtklekrganet..leakdG..vkvet.dsvvltvpakkaaklLkelses 297
                 +++++  +t+++ v++ l+ek+  ++  +  + + +  g      +e+ d    +v   d vv +  + +aa +Lk+   s
  MMETSP1061-20121228|3307_1 237 KTVKGRSQTYTKRVQEILGEKQiRLSTPIGSMKQTSGIGVGVEkkYELFDTsnTSVGFfDEVVFACHTDTAAAILKPSASS 317
                 366677789999999999988734444444444444444332234666554225566579999999999999999988655 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   7.6e-11   1.1e-08      49     162 ..     840     959 ..     815     976 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 7.6e-11
   TIGR01983  49 eglkvlDvGcGgGllsesla.rlgaevtgiDlseelievAklhakkdplk.kieyelksveelaeee..kesfDvvlamEvlEHv..adleeilkecaellkpggilflstinrtlksyl 162
                  g +vlD+G G G ls   a + g++vtgi ls e+ + A +  ++++l+  i +e+ +  ++a+++    +fD vl+ E++E v  ++l e+  ++ ++l p+gil++  i  t   y 
  MMETSP1061-20121228|3307_1 840 PGQEVLDIGFGWGGLSLHAAkKYGCKVTGITLSVEQRALALERVATEGLEdLITFEVIDYRTFARRKenLGRFDRVLSCEMIEAVghDHLGEFYWAVEQVLAPDGILVMEAITTTEERYE 959
                 3889*******887777666156999***********************98899999999999877622469************9556799******************99988877665 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.2   1.2e-09   1.7e-07       1      39 [.      12      51 ..      12      58 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 1.2e-09
   TIGR03467  1 vvvvGgGlAGLaAAveLaraG.vrvtllEarrqlGGRars 39
                v+v+GgG++GL+AA +L+++  ++v ++Ea  +lGG a  
  MMETSP1061-20121228|3307_1 12 VAVIGGGVSGLSAAWHLSENStADVVVFEAEDRLGGHAYT 51
                89****************986589************9976 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   5.9e-08   8.3e-06       1      40 [.      12      52 ..      12      63 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 5.9e-08
   TIGR02734  1 avViGaGlgGLAlAirLaaaG.ievtvlekrdkpGGRagvl 40
                + ViG+G++GL++A +L  +   +v v+e++d++GG a+++
  MMETSP1061-20121228|3307_1 12 VAVIGGGVSGLSAAWHLSENStADVVVFEAEDRLGGHAYTV 52
                57***************9765278**************975 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.1e-07   1.6e-05     137     187 ..       3      53 ..       1      61 [. 0.84

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.1e-07
   TIGR01317 137 ppkkrtGkkvavvGsGPaGlaaadqlnr.aGhtvtvferedrvGGllryGiP 187
                  p+  + kkvav+G G +Gl+aa +l++ +  +v vfe edr GG   y +P
  MMETSP1061-20121228|3307_1   3 KPDAESPKKVAVIGGGVSGLSAAWHLSEnSTADVVVFEAEDRLGGH-AYTVP 53 
                 56778889****************998625689************6.46555 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.8e-07   8.2e-05     530     576 ..       3      49 ..       1      55 [. 0.83

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5.8e-07
   TIGR03315 530 kpqlksekhkvaviGaGPaGlsagyflaraG.lpvtvfekkekagGvv 576
                 kp+++s k kvaviG+G +Glsa++ l+ +   +v vfe +++ gG  
  MMETSP1061-20121228|3307_1   3 KPDAESPK-KVAVIGGGVSGLSAAWHLSENStADVVVFEAEDRLGGHA 49 
                 56666666.9*****************9875279*********99965 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.1e-06   0.00016      42     126 ..     830     919 ..     813     929 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.1e-06
   TIGR02021  42 ekllewlpkdslkGkkvlDAGCGtGllsielAkr.GaivkavDiseklvelarkraekedeaenveFevndles.....le.gkfDavvalD 126
                 ++ll++ +     G+ vlD G G G ls + Ak+ G +v+++ +s +  +la +r  +e   + ++Fev d ++      + g+fD v++ +
  MMETSP1061-20121228|3307_1 830 DTLLDRAQ--VQPGQEVLDIGFGWGGLSLHAAKKyGCKVTGITLSVEQRALALERVATEGLEDLITFEVIDYRTfarrkENlGRFDRVLSCE 919
                 45555555..458*******************866*************************9999*******864222213368999999866 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.2e-06   0.00017     376     420 ..       6      51 ..       2      60 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.2e-06
   TIGR03997 376 arrrkkvlvvGgGPaGleaaataar.rGhrvtllereeelGGqvkl 420
                 a+ +kkv v+GgG +Gl+aa   ++    +v+++e e++lGG+  +
  MMETSP1061-20121228|3307_1   6 AESPKKVAVIGGGVSGLSAAWHLSEnSTADVVVFEAEDRLGGHAYT 51 
                 6677****************8876515679************8655 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.7e-06   0.00067      11     124 .]     832     952 ..     829     952 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.7e-06
   TIGR02469  11 tLakLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdap.....kaeedsleeadav....fvgG.sgkklkeileaverrlrpggrivlnait 124
                 +L+  ++++g+ +lDiG G G +++ aa+  +  +v++i  + e+  l  e ++  g+++  ++e  +      + +e+ l  +d+v    +++  ++ +l e   ave++l p g++v++ait
  MMETSP1061-20121228|3307_1 832 LLDRAQVQPGQEVLDIGFGWGGLSLHAAKKYGC-KVTGITLSVEQRALALERVATEGLEDLITFEV-IDyrtfaRRKEN-LGRFDRVlsceMIEAvGHDHLGEFYWAVEQVLAPDGILVMEAIT 952
                 689999***********************9985.77777666555555555555555555555543.223443333444.78888883333355424678889999**************9986 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   4.8e-06   0.00067       1      34 [.      12      46 ..      12      48 .. 0.94
   2 ?   -3.9   0.4       6.9   9.7e+02     268     307 ..     413     453 ..     411     458 .. 0.58

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.8e-06
   TIGR00275  1 viiiGgGaaGlmaAitaae.egakVlllEknkkig 34
                v++iGgG +Gl aA +++e ++a+V+++E+++++g
  MMETSP1061-20121228|3307_1 12 VAVIGGGVSGLSAAWHLSEnSTADVVVFEAEDRLG 46
                79****************9899*********9987 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 6.9
   TIGR00275 268 eeeleeelkkekkenp.kktvknilkgllpkklaellleel 307
                 + ++e+el+++++++  +++  ++  g +++ +++++l++l
  MMETSP1061-20121228|3307_1 413 KSKVENELQQQQQQQQqQQEKLESTDGRMKAVYVTYWLNRL 453
                 56777888777766652333334444456666666666665 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.2e-05    0.0032       2      42 ..      10      51 ..       9      53 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.2e-05
   TIGR02733  2 ksvvviGaGiaGltaaallakrG.levtlleaaaqvGGCast 42
                k+v viG+G++Gl aa  l+++   +v ++ea+  +GG a t
  MMETSP1061-20121228|3307_1 10 KKVAVIGGGVSGLSAAWHLSENStADVVVFEAEDRLGGHAYT 51
                689*************9999875278************9977 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.4e-05    0.0034     132     176 ..       8      52 ..       2      56 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.4e-05
   TIGR01316 132 tkkkvaviGaGpaGlavaselakk.GhevtvfealhkpGGvlayGi 176
                 + kkvaviG G +Gl+ a +l+ +   +v vfea ++ GG  ay +
  MMETSP1061-20121228|3307_1   8 SPKKVAVIGGGVSGLSAAWHLSENsTADVVVFEAEDRLGGH-AYTV 52 
                 679****************999761579*********9995.4555 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.5     5e+02      78     117 ..     412     451 ..     409     459 .. 0.81
   2 ?   -1.5   0.0       1.9   2.7e+02       6      21 ..     774     789 ..     773     794 .. 0.82
   3 !   12.8   0.0   8.5e-05     0.012      26      93 ..     825     895 ..     821     905 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3.5
   TIGR01934  78 akkkakekeeanvefieadaeeLpfednsfdavtiafGlR 117
                  k k++++ +++ + ++++ e+L  +d  ++av +++ l 
  MMETSP1061-20121228|3307_1 412 TKSKVENELQQQQQQQQQQQEKLESTDGRMKAVYVTYWLN 451
                 5788888877889999999999999999999999998765 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.9
   TIGR01934   6 deiakkYDllNdllSl 21 
                 ++i+++YDl Ndl+  
  MMETSP1061-20121228|3307_1 774 KNIHAHYDLSNDLFTS 789
                 689*********9865 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 8.5e-05
   TIGR01934  26 lWkk..kavkkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eeanvefi 93 
                  W+k  +++++++++ +++vlD+  G G l+++ akk++ kvtg+ ls e  ++a +++  +  e  ++f 
  MMETSP1061-20121228|3307_1 825 QWRKldTLLDRAQVQPGQEVLDIGFGWGGLSLHAAKKYGCKVTGITLSVEQRALALERVATEgLEDLITFE 895
                 687533688999*************************************9999999998877766666665 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.5e-05    0.0035       2      39 ..      12      49 ..      11      54 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.5e-05
   TIGR01813  2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGGNs 39
                v v+G G+ Glsaa ++ ++ +a+vvv e ++ +GG +
  MMETSP1061-20121228|3307_1 12 VAVIGGGVSGLSAAWHLSENSTADVVVFEAEDRLGGHA 49
                88**********************************76 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.4e-05    0.0048     353     387 ..      10      45 ..       3      52 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.4e-05
   TIGR03140 353 kkvaviGGGnsGieaaidlaG.ivehvtvlefadel 387
                 kkvaviGGG sG+ aa  l+     +v+v+e  d+l
  MMETSP1061-20121228|3307_1  10 KKVAVIGGGVSGLSAAWHLSEnSTADVVVFEAEDRL 45 
                 9******************97256789999999987 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   5.2e-05    0.0073       2      36 ..      11      45 ..      10      52 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.2e-05
   TIGR03219  2 rvaiiGGGiaGvalalelsksshlnvklfeaapaf 36
                +va+iGGG++G++ a +ls +s  +v +fea   +
  MMETSP1061-20121228|3307_1 11 KVAVIGGGVSGLSAAWHLSENSTADVVVFEAEDRL 45
                69****************************97665 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.1   5.2e-05    0.0074      23      59 ..      11      48 ..       6      52 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.2e-05
   TIGR00292 23 DviivGaGpsGLtaayylakeg.lkvvvlerklaiGGG 59
                 v+++G+G sGL+aa  l+++    vvv+e +  +GG 
  MMETSP1061-20121228|3307_1 11 KVAVIGGGVSGLSAAWHLSENStADVVVFEAEDRLGGH 48
                699*****************99789*****99998885 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   6.3e-05    0.0089     140     179 ..       8      48 ..       3      59 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.3e-05
   TIGR01318 140 tgkrvaviGaGpaGlacadvlaraGv.kvvvfdrypeiGGl 179
                 + k+vaviG+G +Gl+ a  l+ + + +vvvf+  +++GG 
  MMETSP1061-20121228|3307_1   8 SPKKVAVIGGGVSGLSAAWHLSENSTaDVVVFEAEDRLGGH 48 
                 569******************998752799********995 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.3   7.6e-05     0.011       1      34 [.      12      47 ..      12      52 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 7.6e-05
   TIGR02352  1 vlviGgGviGlsvAveLakrg.hkvtllekd.evgs 34
                v+viGgGv Gls A++L+++  ++v ++e + ++g+
  MMETSP1061-20121228|3307_1 12 VAVIGGGVSGLSAAWHLSENStADVVVFEAEdRLGG 47
                79***************9875268999888745555 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00011     0.016       1      38 [.      11      49 ..      11      55 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00011
   TIGR03197  1 kvavIGaGiAgaalalsLarrG.vqvtllekdeklaqgA 38
                kvavIG+G++g+++a+ L++   + v ++e++++l+  A
  MMETSP1061-20121228|3307_1 11 KVAVIGGGVSGLSAAWHLSENStADVVVFEAEDRLGGHA 49
                69****************9875268******99998766 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   0.00012     0.017       1      49 [.      11      63 ..      11      69 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00012
   TIGR02731  1 rvaiagaglaglsaakyladaghtp.ivleardvlggk...vaawkdedgdwy 49
                +va+ g+g++glsaa +l++      +v+ea d lgg+   v     +dgd y
  MMETSP1061-20121228|3307_1 11 KVAVIGGGVSGLSAAWHLSENSTADvVVFEAEDRLGGHaytVPVPLKADGDGY 63
                699****************9877651679********7222344456677666 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3       1.9   2.7e+02     245     275 ..     415     445 ..     405     454 .. 0.65
   2 ?   10.5   0.0   0.00024     0.034     270     398 ..     828     954 ..     811     966 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.9
   TIGR04074 245 aeeeeeeeeeeeeeekekkvslaeqRleavv 275
                 + e+e ++++++++++++k++ ++ R++av+
  MMETSP1061-20121228|3307_1 415 KVENELQQQQQQQQQQQEKLESTDGRMKAVY 445
                 3333333456666666667777778888875 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00024
   TIGR04074 270 RleavvaalresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqrervellqssltYrDkrlkgfdaavlveviehldeerlkalervvFeaarPklvivttPnaey 398
                 +l++++++ +    ++vlD+G G g L  + +a+k   k++g+ +s+++ + a +r+  + l++     v  +  +   r + l  fd +   e+ie + +++l  +  +v +  +P+ ++v    +  
  MMETSP1061-20121228|3307_1 828 KLDTLLDRAQVQPGQEVLDIGFGWGGLSLH-AAKKYGCKVTGITLSVEQRALALERVATEGLEDLITFEVIDY-RTFARRKENLGRFDRVLSCEMIEAVGHDHLGEFYWAVEQVLAPDGILVMEAITTT 954
                 567778888888899**********98554.56667789******************9999999866555433.4567789999*********************************999875433333 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00025     0.035       1      33 [.      11      43 ..      11      49 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00025
   TIGR01984  1 dviivGgglvGlslAlaLsrksklkialieaks 33
                +v+++Ggg++Gls A  Ls++s  ++ ++ea++
  MMETSP1061-20121228|3307_1 11 KVAVIGGGVSGLSAAWHLSENSTADVVVFEAED 43
                599***************************986 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00042     0.059       2      32 ..      11      42 ..      10      51 .. 0.80
   2 ?   -3.8   0.0       7.3     1e+03     308     327 ..     681     700 ..     674     702 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00042
   TIGR04046  2 pvviiGaGqaGlsvsyllkkkgv.dhvvlekk 32
                +v +iG+G +Gls +++l+++   d vv+e +
  MMETSP1061-20121228|3307_1 11 KVAVIGGGVSGLSAAWHLSENSTaDVVVFEAE 42
                689***************98865166777765 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 7.3
   TIGR04046 308 esvyePvwePeeekteldlk 327
                  s+y+Pv +P++e+ e+ l+
  MMETSP1061-20121228|3307_1 681 VSEYNPVLRPASERDETTLA 700
                 589*********99988775 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0004     0.057       2      33 ..      12      43 ..      11      55 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0004
   TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveaka 33
                ++++GgG+ Gl+ A  L++++  +v ++ea++
  MMETSP1061-20121228|3307_1 12 VAVIGGGVSGLSAAWHLSENSTADVVVFEAED 43
                89*******************99999999976 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       3.9   5.5e+02     205     231 ..     409     435 ..     393     454 .. 0.64
   2 ?    9.6   0.0    0.0008      0.11      18      52 ..     829     863 ..     824     884 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 3.9
   TIGR00755 205 FsqrrKtlrnnlkkkllkkekleevle 231
                 F + + +++n+l+++  ++++ +e+le
  MMETSP1061-20121228|3307_1 409 FGNTKSKVENELQQQQQQQQQQQEKLE 435
                 666677777777754444443333332 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0008
   TIGR00755  18 lqkiveaaeveesdvvlEiGpGlGaLTeellekak 52 
                 l+ +++ a+v+++++vl iG G G L+ + ++k+ 
  MMETSP1061-20121228|3307_1 829 LDTLLDRAQVQPGQEVLDIGFGWGGLSLHAAKKYG 863
                 6778999*********************9999875 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00061     0.087     168     205 ..       7      45 ..       5      49 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00061
   TIGR01350 168 evpeslvivGgGviGvEfasifa.klGvkvtvielldri 205
                 e p++++++GgGv G+  a  ++ +  ++v v+e+ dr+
  MMETSP1061-20121228|3307_1   7 ESPKKVAVIGGGVSGLSAAWHLSeNSTADVVVFEAEDRL 45 
                 689***************98775167789******9997 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.015       2.1      79     160 ..     831     915 ..     829     918 .. 0.70
   2 ?    2.9   0.0     0.099        14     194     238 ..     925     969 ..     921     974 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.015
   TIGR03534  79 aaleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdl..leal.eekgkfdli 160
                 + l++++ ++  +vlD+g G G + l  ak+   +kv+++ +s e  ++a + +++ gl++ ++f   d+  ++   e+ g+fd +
  MMETSP1061-20121228|3307_1 831 TLLDRAQVQPGQEVLDIGFGWGGLSLHAAKK-YGCKVTGITLSVEQRALALERVATEGLEDlITFEVIDYrtFARRkENLGRFDRV 915
                 5677777777889************999988.678888888887777777777777777777655555551133334555666665 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.099
   TIGR03534 194 GldlyrriaeeaakllkeggllllEigekqaeavaelleaagfke 238
                 G d + +++  ++++l+++g+l++E   + +e+ ++ l+++ f +
  MMETSP1061-20121228|3307_1 925 GHDHLGEFYWAVEQVLAPDGILVMEAITTTEERYENYLRSTDFIN 969
                 6667777888899*************************9988754 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.051       7.2     157     201 ..      10      54 ..       3      85 .. 0.73
   2 ?    3.8   0.0     0.042       5.9     147     213 ..     832     896 ..     828     909 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.051
   TIGR03366 157 rrvlvlGaGmLGLtaaaaaeerGasrviavDpsaeRrelaaafGa 201
                 ++v v+G G+ GL+aa  ++e   + v++++ +++    a ++ +
  MMETSP1061-20121228|3307_1  10 KKVAVIGGGVSGLSAAWHLSENSTADVVVFEAEDRLGGHAYTVPV 54 
                 7899*************************9998876666665555 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.042
   TIGR03366 147 aleaagdlegrrvlvlGaGmLGLtaaaaaeerGasrviavDpsaeRrelaaafGaealaeeeelaev 213
                 +l++a+   g++vl +G G  GL+  a a++ G  +v+++  s e r+la++  a++ +e+  + ev
  MMETSP1061-20121228|3307_1 832 LLDRAQVQPGQEVLDIGFGWGGLSLHA-AKKYGC-KVTGITLSVEQRALALERVATEGLEDLITFEV 896
                 688999999**************8766.688999.8**************99998888887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1095 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        73  (0.0177962); expected 4.1 (0.001)
Passed Fwd filter:                        29  (0.00706972); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.76u 0.14s 00:00:00.90 Elapsed: 00:00:01.10
# Mc/sec: 1313.89
//
Query:       MMETSP1061-20121228|3312_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 633.55
//
Query:       MMETSP1061-20121228|3305_1  [L=965]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   10.8   0.2      0.043   10.4   0.1    1.1  1  TIGR03173 pbuX: xanthine permease


Domain annotation for each model (and alignments):
>> TIGR03173  pbuX: xanthine permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1     1e-05     0.043      99     156 ..      72     129 ..      69     181 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1e-05
   TIGR03173  99 llapffsklvklfppvVtGtvilliGlsLlpvainsaaggegakefgslknlllallv 156
                 l+++ + +l+k  +p   G+v+++ G+sL  +ai  ++g  ++++ g +++ + ++  
  MMETSP1061-20121228|3305_1  72 LVSRWMMNLRKSRSPAFVGMVVVVSGISLATIAIAAIIGMVSSSSNGCIESHINGISG 129
                 78999999*******************************9988888887777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (965 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.13s 00:00:00.57 Elapsed: 00:00:00.46
# Mc/sec: 2768.90
//
Query:       MMETSP1061-20121228|3315_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.17
# Mc/sec: 916.16
//
Query:       MMETSP1061-20121228|3318_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-79  263.6   0.2      1e-72  241.8   0.0    2.1  2  TIGR00493 clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
     0.0015   16.0   0.0      0.003   15.1   0.0    1.5  1  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type


Domain annotation for each model (and alignments):
>> TIGR00493  clpP: ATP-dependent Clp protease, proteolytic subunit ClpP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.8   0.0   5.1e-76     1e-72       3     174 ..     135     306 ..     133     312 .. 0.97
   2 !   20.1   0.1   4.4e-08   9.1e-05     162     191 ..     317     346 ..     307     347 .. 0.88

  Alignments for each domain:
  == domain 1    score: 241.8 bits;  conditional E-value: 5.1e-76
   TIGR00493   3 liptvieqtsrgerafdiysrllkeriillsgevedevansivaqllfleaedpekdislyinspGGsitaGlaiydtmqfikpdvsticiGlaasmGafllaaGakGkrlalpnsrimihqplGGaqGqasdieiqakeilklkkklnellaektGqslekiekdterdff 174
                  ip+v+e+   ger+fdiysrll+eri+ + gev d++a+++ aqllfleaedp+  +++yinspGGs+taG+a+ydtm++i+p+v ti +G+aasmG++lla+G+kG r alpn+ im+hqp GGaqG asdi+i+a+e+l+l+++ln+l + ++Gq  ++ ++  ++d  
  MMETSP1061-20121228|3318_1 135 TIPVVLESGATGERSFDIYSRLLRERIVCVHGEVTDQMASVVTAQLLFLEAEDPDSPLYMYINSPGGSVTAGMAMYDTMRYIRPKVHTIAMGQAASMGSLLLAGGSKGCRCALPNATIMLHQPSGGAQGMASDIQIRAQELLRLRSRLNDLYVYHVGQGRDHRKQHGDKDES 306
                 59**************************************************************************************************************************************************************999999998865 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 4.4e-08
   TIGR00493 162 lekiekdterdfflsaeeakeyGlidkvlt 191
                 l+++e+ ++rd+f++ae+a+++G+id++l 
  MMETSP1061-20121228|3318_1 317 LKEVETVMDRDTFMTAEQAQNFGIIDEILI 346
                 6788999*********************97 PP

>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.4e-06     0.003      34      84 ..     191     240 ..     161     251 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.4e-06
   TIGR00706  34 alvlkidSPGGtvvaseeiyeklkklkakkpvvasvgnvaaSGgyyialaa 84 
                  l + i+SPGG+v+a   +y++++ +  k    + +g+ a  G+ ++a ++
  MMETSP1061-20121228|3318_1 191 PLYMYINSPGGSVTAGMAMYDTMRYIRPKVHT-IAMGQAASMGSLLLAGGS 240
                 57789*********************966554.458888888998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 1541.29
//
Query:       MMETSP1061-20121228|3319_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   13.5   1.5     0.0048   13.3   1.0    1.0  1  TIGR02243 TIGR02243: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02243  TIGR02243: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   1.0   1.2e-06    0.0048     215     303 ..      65     147 ..      38     154 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-06
   TIGR02243 215 gataaepaatvldlplrweantedgtql.ls.llevdedataglsltalegqikdplagaavdldlpatappsratvlearllrdarAvad 303
                 ++t  +p     ++p+ + + +++     +s l+ v +++t+  s       ++   ++  +++ ++at pp++ t   a  l d+r   d
  MMETSP1061-20121228|3319_1  65 QITTSTP-----EAPTHFRPEQQQEEEEhRSiLRSVHNATTTTTSA---TTTSTTTSTTTSISISISATLPPTTTTTTSAAFLFDSRGADD 147
                 4444444.....5556555544444333022033333333333333...335678889999********************9999987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 857.93
//
Query:       MMETSP1061-20121228|3321_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-40  134.7   0.5    4.3e-40  134.4   0.3    1.1  1  TIGR00059 L17: ribosomal protein L17


Domain annotation for each model (and alignments):
>> TIGR00059  L17: ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.3   1.1e-43   4.3e-40       2     111 ..      50     159 .]      49     159 .] 0.99

  Alignments for each domain:
  == domain 1    score: 134.4 bits;  conditional E-value: 1.1e-43
   TIGR00059   2 vrklgrtsahRkallrnlasallkhekiettkakakelrrvveklitlakvdnlaarrevkaylrnkellkkLfseiapryeereGGYtRilklgkRrgDaaemailelv 111
                 ++klg+ +++Rkallr+l+++ ++h++i+tt+ +a+++r+ v+++i l+k+++l+arr++  ++++k+l++ Lf+  + ry+er+GGY R+l++  R+gD+a+mai+elv
  MMETSP1061-20121228|3321_1  50 FKKLGKPADQRKALLRALTTETIRHGRIKTTLVRARAVRKHVDHMIELGKRGDLHARRQALGWMYDKQLVHSLFEAAPERYAERNGGYCRVLRTVARQGDNAKMAIIELV 159
                 79***********************************************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.09s 00:00:00.23 Elapsed: 00:00:00.30
# Mc/sec: 699.54
//
Query:       MMETSP1061-20121228|3329_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|3327_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.5   3.6      0.052   11.3   2.5    1.6  1  TIGR03052 PS_I_psaI: photosystem I reaction center subunit VIII


Domain annotation for each model (and alignments):
>> TIGR03052  PS_I_psaI: photosystem I reaction center subunit VIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.5   1.3e-05     0.052      10      27 ..     266     283 ..     263     285 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
   TIGR03052  10 LVGLvfPAvfmaLlflyI 27 
                 LV+Lv PAv+m+ l ly+
  MMETSP1061-20121228|3327_1 266 LVVLVVPAVAMGALALYV 283
                 8****************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.53
# Mc/sec: 1529.08
//
Query:       MMETSP1061-20121228|3333_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.10s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 1568.78
//
Query:       MMETSP1061-20121228|3338_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 1124.04
//
Query:       MMETSP1061-20121228|3340_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.48
# Mc/sec: 2001.83
//
Query:       MMETSP1061-20121228|3335_1  [L=1138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.43
# Mc/sec: 3493.11
//
Query:       MMETSP1061-20121228|3342_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|3330_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1593.65
//
Query:       MMETSP1061-20121228|3346_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|3341_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-05   20.2   0.2    0.00015   19.6   0.1    1.2  1  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain
  ------ inclusion threshold ------
      0.015   13.0   0.0      0.024   12.4   0.0    1.2  1  TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
      0.058   10.2   0.3        0.1    9.4   0.2    1.3  1  TIGR03952 metzin_BF0631: zinc-dependent metalloproteinase lipoprotein, BF0631 family


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   1.1e-07   0.00015     163     240 ..     316     393 ..     291     438 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.1e-07
   TIGR03296 163 edagvgVlaHElGHdlglPDl.YdtsydgggetpvGdWslMssGswagkgstppdmkawlkeklgWlneqsvatkrgkt 240
                 +  +v  l HE+GH+lgl +  Y+ ++ + ++++    +lM+   w  + +    ++a + ++lgW  +q++a +  ++
  MMETSP1061-20121228|3341_1 316 DCESVSFLMHEIGHNLGLSHSgYKDDDPAVDDNYNDETGLMGYAYWRDD-GPAKCFNAPKNWQLGWYAQQELALDPLSI 393
                 445677899**********97477655555889**********999966.56677899999***********9998873 PP

>> TIGR03800  PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.7e-05     0.024      36      82 ..     153     199 ..     117     217 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.7e-05
   TIGR03800  36 eidglilPGGesttlskllektglleplreliksglPvfGtcaGlil 82 
                  ++ l++P G s t++kl+e+     + r+ + +g  ++Gt   l++
  MMETSP1061-20121228|3341_1 153 GVSTLVVPDGASFTIEKLMEDDRRHYKQRQQLGDGHRMVGTRRTLVV 199
                 3899************************************9877665 PP

>> TIGR03952  metzin_BF0631: zinc-dependent metalloproteinase lipoprotein, BF0631 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.2   7.6e-05       0.1     229     266 ..     316     348 ..     299     356 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 7.6e-05
   TIGR03952 229 sadvvetlAHELgHYlGLfHvFgeektedaidatkDtD 266
                 + + v  l HE+gH lGL H   ++++  a+d+     
  MMETSP1061-20121228|3341_1 316 DCESVSFLMHEIGHNLGLSHSGYKDDDP-AVDD----N 348
                 55677889************87666633.3433....3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 2017.55
//
Query:       MMETSP1061-20121228|3350_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.33
# Mc/sec: 431.96
//
Query:       MMETSP1061-20121228|3347_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 1335.60
//
Query:       MMETSP1061-20121228|3352_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-10   38.4   0.0    1.5e-09   35.4   0.0    2.0  1  TIGR03442 TIGR03442: TIGR03442 family protein
  ------ inclusion threshold ------
      0.022   11.9   0.0      0.031   11.4   0.0    1.1  1  TIGR01134 purF: amidophosphoribosyltransferase
      0.035   10.4   0.0      0.049    9.9   0.0    1.1  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)


Domain annotation for each model (and alignments):
>> TIGR03442  TIGR03442: TIGR03442 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   1.1e-12   1.5e-09      40     249 ..     123     379 ..     115     381 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 1.1e-12
   TIGR03442  40 lnADGfGvGwydsekdtvparyrstqPlWaDaslasl.araveskcvlaavRsAtvgqavelsataPFadgri....llsHnGvvdnfretly...rplrdr....lddeeylaiegstDsellfallleelleqkk.kaleevlaevllilak..laaaekar.lnllladG.srllAtrwad.........................tLyvlkd.............pe.svivasEPldddpeWqevPdrsllsvseedvkvt 249
                 +  DG+Gv +y+ +     ++++++ P  +    + l ++ +++  +++  R Atvg  vels+  PF  + +    ++  nG +  f++      r+l d+     +de+y +  g+tDse+ f  +l++l+ + +      vl++ l+ l +  + ++++   +n ll+ G  +l+   w                                 d             ++   ++a  Pl ++++W e+   +l+  ++   +vt
  MMETSP1061-20121228|3352_1 123 IHSDGWGVAFYEGK---GIRQFHDSSPACSSPMANFLeSNPIRTYNMMSHLRFATVGE-VELSNVHPFCREMWginfAFAMNGDIPMFKRDPNaklRTLEDTgdspCKDENYYHSVGNTDSEAAFCAILNALRVKFRqLPSLPVLKNALHELCEeiIREDPEGTiMNFLLTCGpDTLWVYSWPGsrpgstvwnglhyttraypfttsrlR-----DmdyeidfsstnkeEDcISVIATKPLTENEDWIEIGRGELIVFDQGRPNVT 379
                 678**********9...99*********9998777652567***************96.9*********998755547899*****998644400055555522224577899999*************999876542555678888888886622344444447999999994578888887667888888877777777777444440.....344445555555433324578888999988998888888888887776665 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.3e-05     0.031      66     106 ..     165     205 ..     153     252 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.3e-05
   TIGR01134  66 vaagHvRYsTaGsskseeaqPlvvssavgg.lalaHNGnlvn 106
                   ++H R++T G+ + +++ P+++++  g  +a a NG++  
  MMETSP1061-20121228|3352_1 165 NMMSHLRFATVGEVELSNVHPFCREMW-GInFAFAMNGDIPM 205
                 4569*********999*******9987.5559******9754 PP

>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   3.6e-05     0.049      52      91 ..     151     190 ..     125     216 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.6e-05
   TIGR01135  52 elkekleekelegkvgigHtRWaTHGkpteeNaHPHvdek 91 
                  +++ le++++++   ++H R+aT G+++  N HP + e 
  MMETSP1061-20121228|3352_1 151 PMANFLESNPIRTYNMMSHLRFATVGEVELSNVHPFCREM 190
                 4677788888999999*******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.39
# Mc/sec: 1411.27
//
Query:       MMETSP1061-20121228|3353_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1566.84
//
Query:       MMETSP1061-20121228|3356_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 2077.76
//
Query:       MMETSP1061-20121228|3359_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-94  313.4   0.0    9.2e-83  276.8   0.0    2.2  2  TIGR01070 mutS1: DNA mismatch repair protein MutS
    1.1e-34  117.7   0.0    5.9e-34  115.3   0.0    2.0  2  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR01070  mutS1: DNA mismatch repair protein MutS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   9.7e-13     2e-09     226     327 ..     198     307 ..     181     311 .. 0.79
   2 !  276.8   0.0   4.5e-86   9.2e-83     477     788 ..     533     847 ..     519     887 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 9.7e-13
   TIGR01070 226 aketqrtaLshlrpvrlyeledalkldaatkrnLelten.......lrgg..kentLlsvlD.etktamGsrlLkrWlerPlldrekleerqetvealleefalredlrelL 327
                   +   t L+h  +vr  +l+ +l +d+ + +++ l  +       + gg  + n+L  +l   + tamG+r L  Wl++Pl+d + +eerq+ v +ll  ++ ++++r+ L
  MMETSP1061-20121228|3359_1 198 TSSSSSTCLEHSLAVRQGRLNSCLAMDTTAAQAIHLLPPsndgeavVVGGtkHTNSLWGLLSgPCLTAMGKRKLGVWLRQPLVDLASIEERQDAVTNLL--GMAKDSIRDGL 307
                 55667789999999**************9999999974412222224455446799**9997369*********************************9..45666666655 PP

  == domain 2    score: 276.8 bits;  conditional E-value: 4.5e-86
   TIGR01070 477 rqtLknaeryilpelkekedkvleakekalalekelfeelrekvkkeleaLqeaakalaelDvlaalaevaet..lnyvrPefgde....selrireGrhpvvekvlkeefvandlela.dnrelllitGPnmsGkstylrqtaliallaqiGsfvPaekaelpliDriftriGaaDDLasGrstfmvemeevanilkeatensLvLlDevGrGtstyDGlalaqaiaealhekiraltLfathYfeLtaLeekleklknvhvaaleengtvvflhkvkeGaasksYGlavaalaglPkeviararekLkeleasssks 788
                 ++ Lkn   +   el++  ++  +++++ ++l + +    +  + ++   +++a++++ +lDv+ ala  a    ++y rP+++d+    + + +++ rhp ve   + e+++nd+ l+  n+  ll+ GPnm+Gks y+r +  i+ +aqiGs+vP  +a++ +   i +r+Ga D    G stfm em e   il+ at++sL+++De+GrGtst+DG  la+ai e+l ++++++ +fath++eLt L+    +++n hv+a+   ++++fl++v++G+  +s+G++va++a +Pk+vi+ a++  +ele+     
  MMETSP1061-20121228|3359_1 533 HRILKNGVYFSSLELRQLSARYQDLQSEYARLSRTIVRSAMGIASTYSGVVERACETIGTLDVFCALAYTAAMnpHGYCRPTMTDSdedgAGIVLEAARHPCVELQENMEYIPNDICLTfPNQAQLLVSGPNMGGKSVYIRSLGAIVCMAQIGSYVPCSSATINICHSILARVGAGDLQERGISTFMAEMLESSAILRAATKRSLIIIDELGRGTSTFDGYGLARAILEYLVDRVGCFVVFATHFHELTHLP----RVQNCHVTAQKGSQGLTFLYQVRPGPCLESFGIQVAEMAHVPKSVIEDAKKRARELENFVDAG 847
                 678999999999********************************************************988642378******976222256999*********999*********99846888899**************************************************99**********************************************************************998....9*******************************************************9864433 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.12   2.4e+02     105     163 ..     369     429 ..     363     442 .. 0.63
   2 !  115.3   0.0   2.9e-37   5.9e-34     228     508 ..     551     839 ..     414     846 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.12
   TIGR01069 105 eerqdleilskllaelitLselendikelidddgkvkdeasee..ldeireslkaleeevk 163
                 + ++ le l +l+  +    + + d  e++d  g v de +e   l+++++++ +l +e +
  MMETSP1061-20121228|3359_1 369 DTKKPLEALYQLYVLASNHLPHLLDCMECVDASGGVGDEENESviLNRLHKEVTQLVNELQ 429
                 5566778888877766554444457788999999999886665225555555555544444 PP

  == domain 2    score: 115.3 bits;  conditional E-value: 2.9e-37
   TIGR01069 228 nnklaqlkrkeeeeiekilrqlsekvaeylleLeellkeltelDllqararyakavkae...fpeistt....kvielkearHPlLkesk...vvpvtlelks.ekrviiiTGpNtGGKTvtLKtlgllalmaksgipipakesselplFeeifadIgDeQsieqnlSTFsshmkniseiLkkldensLvllDElgaGTDpdegsaLaislLeklakq.nalvlitTHykelkalkyeseevenasvefDeetlsPtYklligvpGrSyAfeiaqrlglpseiiekAkeklge 508
                   + ++l+ +  +  + i+r        y    e   +++ +lD+ ++ + y+ a++ +    p++ ++      i l+ arHP  + ++    +p+++ l + +   + + GpN GGK v +++lg ++ ma+ g ++p + s+++++ + i+a +g     e  +STF + m + s+iL++ ++ sL+++DElg GT   +g  La ++Le+l ++  + v+ +TH++el  l   ++  +   ++   + l  +Y++  g   +S  +++a+ + +p+++ie Ak+   e
  MMETSP1061-20121228|3359_1 551 SARYQDLQSEYARLSRTIVRSAMGIASTYSGVVERACETIGTLDV-FCALAYTAAMNPHgycRPTMTDSdedgAGIVLEAARHPCVELQEnmeYIPNDICLTFpNQAQLLVSGPNMGGKSVYIRSLGAIVCMAQIGSYVPCS-SATINICHSILARVGAGDLQERGISTFMAEMLESSAILRAATKRSLIIIDELGRGTSTFDGYGLARAILEYLVDRvGCFVVFATHFHELTHLPRVQNCHVT--AQKGSQGLTFLYQVRPGPCLESFGIQVAEMAHVPKSVIEDAKKRARE 839
                 555555666666666666666665566666666677777777775.455677777765533357777667676789*********999988899*******98456689*******************************97.5789***********99999***************************************************9876379***********999766655444..46678999999******99***********************98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.13s 00:00:00.63 Elapsed: 00:00:00.39
# Mc/sec: 3113.59
//
Query:       MMETSP1061-20121228|3362_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.39
# Mc/sec: 1434.96
//
Query:       MMETSP1061-20121228|3363_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 1050.41
//
Query:       MMETSP1061-20121228|3361_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 1794.34
//
Query:       MMETSP1061-20121228|3368_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.33
# Mc/sec: 223.98
//
Query:       MMETSP1061-20121228|3369_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.36
# Mc/sec: 337.31
//
Query:       MMETSP1061-20121228|3370_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1061-20121228|3380_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 402.91
//
Query:       MMETSP1061-20121228|3375_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.48
# Mc/sec: 434.46
//
Query:       MMETSP1061-20121228|3383_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 359.01
//
Query:       MMETSP1061-20121228|3377_1  [L=993]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-44  148.3   0.1    2.6e-31  106.4   0.1    2.2  2  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
    6.3e-39  131.7   0.0    8.9e-29   98.1   0.1    2.2  2  TIGR02063 RNase_R: ribonuclease R
    7.1e-34  114.6   0.1      8e-24   81.4   0.1    2.1  2  TIGR02062 RNase_B: exoribonuclease II


Domain annotation for each model (and alignments):
>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.4   0.1   1.9e-34   2.6e-31     187     335 ..     440     598 ..     412     622 .. 0.85
   2 !   39.6   0.0   3.3e-14   4.5e-11     477     526 ..     777     826 ..     773     847 .. 0.87

  Alignments for each domain:
  == domain 1    score: 106.4 bits;  conditional E-value: 1.9e-34
   TIGR00358 187 veeeakktRedLtdlalVTiDsedakDlDDAvyvkkladk........gfkLvVaIADvsaYvaenseldkeAkergssvYlpefviPmlPeeLSnelCSLnpnekRlvlvCeltidakgritek..elyeavikskarltYdkVsdiLedddelkeey 335
                  ++  +  R+dL+ +++ TiDs+++k++DD + v+ l+++         ++ +++IAD   + +++sel + A++r++s+Ylp+  iPm+P   S+++ SL+++++  +l+  ++++ +g i e    + +++++ + rltYd+  ++Led   ++ee 
  MMETSP1061-20121228|3377_1 440 DPDTLLGIRRDLRSQKIYTIDSASTKEIDDGLGVEILEGDdgngngekRYRYWIHIADADRWAKRDSELFQIARRRATSIYLPGKSIPMMPSSVSQQILSLRAQKDVCALSLGVELNDDGSIIEDsiVVTPSTVRVTYRLTYDDADEMLEDGIGYNEEW 598
                 34455678****************************9988889999999************************************************************************9877355669*******************988777774 PP

  == domain 2    score: 39.6 bits;  conditional E-value: 3.3e-14
   TIGR00358 477 lRslkkAeykveplgHFglgleeYahfTSPIRrYpDlivHRlikavlake 526
                 +R+ + A+++++ l+H glgl  Y ++TSPIRr++Dl vH ++k  + ++
  MMETSP1061-20121228|3377_1 777 RRFFSPAKISPDALPHSGLGLGCYVQWTSPIRRFQDLQVHAAVKRFVRRQ 826
                 89******************************************998887 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.1   6.5e-32   8.9e-29     244     381 ..     445     592 ..     435     616 .. 0.91
   2 !   31.1   0.0   1.2e-11   1.6e-08     534     580 ..     781     827 ..     777     842 .. 0.88

  Alignments for each domain:
  == domain 1    score: 98.1 bits;  conditional E-value: 6.5e-32
   TIGR02063 244 lkgRkDlrdlplvtIDgedakDlDDAvyvekkkdg........nyklvVaIADVshYVkensalDkeAlkrgtSvYlvdrviPMLPekLSngiCSLnpnedrlalvvemeidkkGrvkksevy..eavikskarltYeevnkilegkk 381
                 l  R+Dlr +++ tID + +k +DD + ve ++ +        +y+ +++IAD   + k++s+l + A++r+tS+Yl+ + iPM+P  +S +i SL+ ++d  al+  +e++ +G +++ +++  +++++ ++rltY+++ ++le+  
  MMETSP1061-20121228|3377_1 445 LGIRRDLRSQKIYTIDSASTKEIDDGLGVEILEGDdgngngekRYRYWIHIADADRWAKRDSELFQIARRRATSIYLPGKSIPMMPSSVSQQILSLRAQKDVCALSLGVELNDDGSIIEDSIVvtPSTVRVTYRLTYDDADEMLEDGI 592
                 567***********************999987655567888999**************************************************************************98764339******************9866 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 1.2e-11
   TIGR02063 534 kkAkYsaeniGHFGLalekYtHFTSPIRRYpDLivHrllkkalekee 580
                 + Ak s++ + H GL l  Y+ +TSPIRR+ DL+vH ++k+++++++
  MMETSP1061-20121228|3377_1 781 SPAKISPDALPHSGLGLGCYVQWTSPIRRFQDLQVHAAVKRFVRRQR 827
                 56889999**********************************99765 PP

>> TIGR02062  RNase_B: exoribonuclease II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.1   5.9e-27     8e-24     168     329 ..     424     595 ..     420     643 .. 0.82
   2 !   31.0   0.0   1.1e-11   1.5e-08     472     524 ..     777     829 ..     768     843 .. 0.91

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 5.9e-27
   TIGR02062 168 helerkepkgvedeelkddksl...redltaldfvtidsestkdlddalyieelan........gdlklivaiadPtayiaeeskldkaakkrgftnylPGfniPmlPrelsdelcslianevrPvlacsitiskdGni.tdkieffaatikskaklvydkvsdwlekassawq 329
                 he e+++    +d++++d  +l   r dl + +  tids+stk++dd l +e l+         + ++  + iad   + + +s+l + a++r+ ++ylPG  iPm+P ++s+++ sl+a++   +l   ++++ dG+i +d i    +t++   +l+yd+  + le++   ++
  MMETSP1061-20121228|3377_1 424 HEHENDDD-DDDDDTVDDPDTLlgiRRDLRSQKIYTIDSASTKEIDDGLGVEILEGddgngngeKRYRYWIHIADADRWAKRDSELFQIARRRATSIYLPGKSIPMMPSSVSQQILSLRAQKDVCALSLGVELNDDGSIiEDSIVVTPSTVRVTYRLTYDDADEMLEDGI-GYN 595
                 44444443.3455566665554467***************************998767778777789**********************************************************************972566777789******************975.333 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 1.1e-11
   TIGR02062 472 rryqsfaeissepaPhfalGleeyatwtsPirkysdminhrllkavikketav 524
                 rr+ s a+is + +Ph +lGl  y  wtsPir++ d+  h  +k  ++++  +
  MMETSP1061-20121228|3377_1 777 RRFFSPAKISPDALPHSGLGLGCYVQWTSPIRRFQDLQVHAAVKRFVRRQRVM 829
                 9*******************************************999988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.49u 0.12s 00:00:00.61 Elapsed: 00:00:00.56
# Mc/sec: 2299.39
//
Query:       MMETSP1061-20121228|3386_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 2235.57
//
Query:       MMETSP1061-20121228|3385_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       351  (0.085568); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 1462.03
//
Query:       MMETSP1061-20121228|3387_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       467  (0.113847); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.41
# Mc/sec: 2176.21
//
Query:       MMETSP1061-20121228|3388_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-06   25.3   0.2    1.3e-05   23.2   0.0    2.3  3  TIGR00090 iojap_ybeB: iojap-like ribosome-associated protein
  ------ inclusion threshold ------
       0.27    7.3   7.2       0.33    7.0   5.0    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        4.1    4.2  17.2        6.4    3.6  11.9    1.2  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
          5    4.1  17.8        8.7    3.3  12.3    1.4  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
          9    2.5  31.1         13    1.9  21.6    1.2  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR00090  iojap_ybeB: iojap-like ribosome-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.6       4.2   3.4e+03      42      47 ..     148     153 ..     130     168 .. 0.52
   2 ?   -3.4   0.0       3.1   2.5e+03       5      21 ..     204     220 ..     201     240 .. 0.78
   3 !   23.2   0.0   1.5e-08   1.3e-05      64      99 .]     315     350 ..     304     350 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 4.2
   TIGR00090  42 qvkala 47 
                 q++ ++
  MMETSP1061-20121228|3388_1 148 QMQQIQ 153
                 222222 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.1
   TIGR00090   5 ivealedkkaedivvld 21 
                 i  +le++ ++d++v++
  MMETSP1061-20121228|3388_1 204 IRLLLEEHGGSDVTVIE 220
                 55578889999999885 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 1.5e-08
   TIGR00090  64 vegkeegeWvlvDlgdvvvhifqeeaRefYdLEklw 99 
                 +  ++ ++W +vD+g+ +vh++  ++R+  +LE+lw
  MMETSP1061-20121228|3388_1 315 TTTSTPESWKIVDCGNFIVHLLDGATRTDLNLEELW 350
                 45556789**************************** PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   5.0    0.0004      0.33     139     243 ..      57     167 ..       9     334 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0004
   TIGR00934 139 irdssrrnfklrrtktllereledrtetkvrtrtq....vslprksakrddfqeklfsGelvkrdeqdsvhs...dqnsedvksdtsadesisslrfdeskekkkstrvpse 243
                 ++++ r ++ lr t +  e  ++  te++++t t+      l +  +++++++e+lf+ el++++eq + +    ++++e+++++   +++++ ++++++++++++++ p e
  MMETSP1061-20121228|3388_1  57 VKEQERLDRALRETEREAEALFQL-TEEEQATLTDdeilERLEEVLRREEELEEELFRNELEREEEQAEREKlrlQEQQEQQEQEEEDQQQMQMQQIQQQQQQQQKQQKPQE 167
                 333333333333333333322222.233333333333333333444455555666666666555554332220001111122222222222222222222222222222211 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  11.9    0.0078       6.4      10     118 ..      65     193 ..      54     201 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0078
   TIGR01554  10 elakelkklted.ekeeeaeeekkekdalkaeidkleaeierleea.....aaeeeakeaasgeagkeeeeeeeakeeaaea.fraylrrgddalaee.............akalstgtdsdgGylvPe 118
                    +e + ++e+  +++e+e+++ ++d++ ++++++  + e+lee+     +++ee+++++++   +e++e++e++ee +++  ++ ++++++++ ++             +++ +++  ++  ++vP 
  MMETSP1061-20121228|3388_1  65 RALRETEREAEAlFQLTEEEQATLTDDEILERLEEVLRREEELEEElfrneLEREEEQAEREKLRLQEQQEQQEQEEEDQQQmQMQQIQQQQQQQQKQqkpqelapdwlqtRRSRQETRVQSSSAVVPV 193
                 444444444444355555555555555566666666666666666688777444444444444444444444444444444453444555555554444666778888887555555555577777775 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3  12.3     0.011       8.7      35     154 ..      73     192 ..      48     225 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.011
   TIGR03752  35 adkalaelspeelkalgiegdtpedtlrtlvaelkelrkel..aklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlp 154
                 +++al +l+ ee  ++ +  d   + l  +  + +el++el  ++le+e e+ ++e+ rl++++e+ +++ +++ + + ++++++++q++++q+  e + d lq++ + + ++ +ss++ +p
  MMETSP1061-20121228|3388_1  73 EAEALFQLTEEE--QATLTDDEILERLEEVLRREEELEEELfrNELEREEEQAEREKLRLQEQQEQQEQEEEDQQQMQMQQIQQQQQQQQKQQKPQELAPDWLQTRRSRQETRVQSSSAVVP 192
                 445566666665..556788999999999999999999987445677777777777777777777777777777777777777777776666665555556666666655555555555555 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9  21.6     0.016        13      19     128 ..      59     166 ..      46     189 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.016
   TIGR03319  19 akkiaekkleeaeeeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekke.keleekekeleekeeele 128
                 +++  ++ l+e+e+ea+++ + +++e  + + + +le  eev +  eele+el   r+el+++e++ ++++ +l++++e+ e++ee+ ++ + +++++++++ ++k+++ +
  MMETSP1061-20121228|3388_1  59 EQERLDRALRETEREAEALFQLTEEEQATLTDDEILERLEEVLRREEELEEEL--FRNELEREEEQAEREKLRLQEQQEQQEQEEEDQQQMQmQQIQQQQQQ-QQKQQKPQ 166
                 44555778999********************************9999999987..589999*****999999999999877777666655541344444433.34443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       709  (0.172843); expected 82.0 (0.02)
Passed bias filter:                      239  (0.0582643); expected 82.0 (0.02)
Passed Vit filter:                        63  (0.0153584); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.45
# Mc/sec: 1349.22
//
Query:       MMETSP1061-20121228|3392_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 733.86
//
Query:       MMETSP1061-20121228|3393_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063    9.8   2.9      0.074    9.5   2.0    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   2.0   1.8e-05     0.074     216     286 ..      53     122 ..      39     155 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 1.8e-05
   TIGR01651 216 dddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaetpgeakrpdrp 286
                 +dd+ ++++++++ ++e+++++  +++ ++  ++++ ++ ++ ++a++   ++   e a+  g  +r+++ 
  MMETSP1061-20121228|3393_1  53 QDDNDQNQNENDNDNNENDNND-NNPDRNRKPNRNKSKAGNDPSDASASSIPESVLELAKNLGRPRRQQQD 122
                 3444444444444444444333.456666677777777777888888888888888888878877777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 824.93
//
Query:       MMETSP1061-20121228|3395_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       320  (0.0780107); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1932.70
//
Query:       MMETSP1061-20121228|3400_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-21   73.6   0.2    1.9e-20   71.5   0.0    1.9  2  TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase


Domain annotation for each model (and alignments):
>> TIGR02432  lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.5     0.082   3.3e+02      67      87 ..     110     130 ..      84     156 .. 0.54
   2 !   71.5   0.0   4.5e-24   1.9e-20       1     167 [.     171     340 ..     171     349 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.082
   TIGR02432  67 evkakakekkknleeaaRelR 87 
                 + ++++++++++  ea R++R
  MMETSP1061-20121228|3400_1 110 QQEDEQQRQQEEEREAKRRKR 130
                 222222222223333334333 PP

  == domain 2    score: 71.5 bits;  conditional E-value: 4.5e-24
   TIGR02432   1 kllvAvSGGvDSmaLlkllkelkeklkik.....liaahvdHklreeskeeaeeveelckklkiklvvkk...vevkakakekkknleeaaRelRYkaleelakklkaeviltAHhadDqiEtillrllrgsglkglsglkeirelekkiqivRPLlkiskkeieeylkeeklki 167
                 +++v vSGG+DS aLl ll +l+e++k       l+a+hvd   +++   + e + ++ ++l++++++ +   ++v  +++ + k+  + + +lR  +l + a +l++++++++HhadD +Et++l++l   +lk + + ++++++  +  ++RPL+++  ++ie+y++  +++i
  MMETSP1061-20121228|3400_1 171 HIMVCVSGGKDSAALLVLLMHLQEQFKPIgvnfrLTAVHVD---QKQPGYDGEPLLKWFDELGVDYEILEedtYSVVVDKTSEGKSYCTMCSRLRRGILYSKALELGCNKLVLGHHADDSLETLVLNMLHAGELKAMPA-RYTSRR-GQLAVMRPLITCMEDDIEQYARLAQFPI 340
                 589***********************965775555555555...6677889999999999999999998755545555666667889999999999************************************9999999.666656.69*******************9888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       367  (0.0894686); expected 82.0 (0.02)
Passed bias filter:                      233  (0.0568016); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.25
# Mc/sec: 2191.02
//
Query:       MMETSP1061-20121228|3398_1  [L=1005]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1005 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 3401.26
//
Query:       MMETSP1061-20121228|3397_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 2354.69
//
Query:       MMETSP1061-20121228|3399_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-85  284.4   0.0    4.7e-85  283.6   0.0    1.4  1  TIGR00260 thrC: threonine synthase


Domain annotation for each model (and alignments):
>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.6   0.0   1.1e-88   4.7e-85      12     331 ..      73     432 ..      59     434 .. 0.89

  Alignments for each domain:
  == domain 1    score: 283.6 bits;  conditional E-value: 1.1e-88
   TIGR00260  12 ekdlvdlaegstelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne....tvlcAtsGdtgaaaaealagkanvkvvvLyPkgkispv.keklvtalaenakvlaikGdFDdaqdlvkeifedke...klklnsvNsinparieaqk.tyafeiveqlgkes..pdkvvvpvpsgnfgailkGflekkelglpieklaiaaegaadivrrflksgdlepkedkeTlstAmdignpsnverale.larrslgnledlke.........................svsdeeileaikklaeeegyllephtavavaalkklvekg.vs...atadpaKFeevve.al 331
                   +l+d+  +s ++fr ++++  + +    v+elfhgPt+aFKD++lq++++ ++++le g +    +vl+AtsGdtg+aa+++l+gk++v++v+L Pkg++sp+ + +++t+ + n++ +a++G+FDd+qdlvk+ f+  e    +kl++vNsin+ r++aq+ +y+++ +  ++ke+    kv  +vp gnfg+il+Gf++k+ + lp+ kl +a++++ di++rf  +g+       +T+s++mdi  +sn+er l+ la +  ++l +  +                         ++  + +l+ i++  e+++y++ phtav+v a+ +  + + +    ata+++KF+ +v+ a+
  MMETSP1061-20121228|3399_1  73 ADKLEDIVRRSCAAFRHEEVTPVINVAGHKVLELFHGPTFAFKDVALQMLGNFFEYFLETGSNdgrlAVLGATSGDTGSAAIYGLRGKKGVDCVILFPKGRVSPIqERQMTTVQDDNIHCVAVEGTFDDCQDLVKASFNSPEfrdRVKLGAVNSINWCRVLAQItYYFWSYLRVTDKEDlkDAKVGYSVPTGNFGDILAGFYAKQIG-LPVGKLIVATNEN-DILHRFFTNGEYHREPINKTISPSMDICVSSNFERYLFfLAGNDSAKLAQWMStfeetkkltiegellekaqsdfgsaRADTSMTLDIIREYNEKHNYVMCPHTAVGVSAIHQSNDVDeTMvclATAHEGKFPAAVNqAI 432
                 457888999999*********999988889*******************************999*****************************************999******************************9555677*******************999*********97621458999**************999988.************9.**********66666666*******************98666666666655456999*******************966666667777777778899**************9998877622468************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1573.97
//
Query:       MMETSP1061-20121228|3403_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 443.96
//
Query:       MMETSP1061-20121228|3402_1  [L=1610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.78u 0.12s 00:00:00.90 Elapsed: 00:00:00.64
# Mc/sec: 3320.35
//
Query:       MMETSP1061-20121228|3407_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2272.10
//
Query:       MMETSP1061-20121228|3410_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 734.55
//
Query:       MMETSP1061-20121228|3414_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 701.94
//
Query:       MMETSP1061-20121228|3416_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|3418_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.33
# Mc/sec: 375.97
//
Query:       MMETSP1061-20121228|3415_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.10s 00:00:00.36 Elapsed: 00:00:00.41
# Mc/sec: 1664.35
//
Query:       MMETSP1061-20121228|3423_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 441.48
//
Query:       MMETSP1061-20121228|3417_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00069   17.4   0.6     0.0016   16.2   0.4    1.7  1  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.4   3.8e-07    0.0016     155     239 ..     268     347 ..     229     427 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.8e-07
   TIGR03296 155 vgdytiqpedagvgVlaHElGHdlglPDlYdtsydgggetpvGdWslMssGswagkgstppdmkawlkeklgWlneqsvatkrgk 239
                 + +y  +p  +   +  HE+GH+lgl++  +   d     +  + s+M++  +  + +    +++ + ++l W ++q+++ k  +
  MMETSP1061-20121228|3417_1 268 FDSYFGHPWCNEPSTQLHEIGHNLGLGHSSKD-SDE----YGDKASIMGGPGYSDDDGPAQCFNPAHNWQLRWYEKQQLSIKPME 347
                 55677777667777889***********9996.333....44479*****7777666667778999************9988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 1794.42
//
Query:       MMETSP1061-20121228|3422_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00056   17.3   0.2     0.0024   15.2   0.1    2.1  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family
  ------ inclusion threshold ------
      0.032   11.4   0.0      0.066   10.4   0.0    1.6  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase


Domain annotation for each model (and alignments):
>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.2e-06    0.0024      90     132 ..     302     345 ..     291     389 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.2e-06
   TIGR01840  90 ysIDpnrvyvtGLSaGggetaVll.atypdvfAgaAsnaglpyg 132
                  sID+n v +tG+S Gg  taV l    p v Ag+   ++ ++ 
  MMETSP1061-20121228|3422_1 302 RSIDTNNVAITGMSFGGFTTAVTLeLKDPRVRAGVMMCSSMALS 345
                 58********************6626789999999888887654 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   3.2e-05     0.066      72     120 ..     300     348 ..     277     386 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.2e-05
   TIGR02427  72 llDalgiekaavcGlSlGGli.aqaLaarrpdrvealvlsntaakigtae 120
                 l+ +++ +++a++G+S GG + a +L ++   rv+a v+++++  +  ++
  MMETSP1061-20121228|3422_1 300 LFRSIDTNNVAITGMSFGGFTtAVTLELKD-PRVRAGVMMCSSMALSGTQ 348
                 666889999**********87255666666.69*******9999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1851.62
//
Query:       MMETSP1061-20121228|3426_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-07   27.7   9.3      7e-07   26.9   6.4    1.3  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   6.4   1.7e-10     7e-07      69     297 ..      11     246 ..       4     252 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.7e-10
   TIGR00817  69 lpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsa.misniefvarnifsKkiltkk.sldk.lnlyalisililfllspiafivegl..klltreflqaiskvnvlklvtvslvaalgifHlyqqva..fqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                 +p ++v +++   sn +l  + + f+ ++k+  p+f ++   +f+ + ++ +l   +l i  G  l    e+ f l gf+   m+s ++     ++  k+ t+   l + +  + l++  ++  ++  ++++e +  kl++      + ++   +l tv+ + +lg   ++ ++     l+ + s++   +g v+K ++ I + + +f+ k++  ++ Gv++  aGv lY+ v + 
  MMETSP1061-20121228|3426_1  11 IPCGMVTALDIGLSNLALVSITLTFYTMVKSATPVFVLGWAYLFKIERITWPLIGVILVIAAGEFLTVYGEVDFVLHGFILClMASVLSGARWTLVQLKLQTMDpPLQStIVTMKLLTPSMFWSMLILSIVIERPwtKLWNPDNGTDGDESEKYFLLTVLGLGILGGTVAIAMILceLYLILKASAIILMIGGVVKELMNIIIGVSLFGDKLNLTNSAGVCVVFAGVVLYKVVFHI 246
                 7999999*******************************************666667788888999**************988255555555556666666663342322033344444222223333444444432267766666666788888999999888888888888775114578999**************99999999************************988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1319.89
//
Query:       MMETSP1061-20121228|3428_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          9    3.0  11.2        9.8    2.8   7.8    1.0  1  TIGR01363 strep_his_triad: streptococcal histidine triad protein


Domain annotation for each model (and alignments):
>> TIGR01363  strep_his_triad: streptococcal histidine triad protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   7.8    0.0024       9.8     233     282 ..       8      57 ..       2      60 .] 0.55

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0024
   TIGR01363 233 sgkqgrsarrsdrrqgsrkasisdvtpnpaqpalsetndasqsktqrdef 282
                 +gk++r  rrs    +s  +s+s+ +p      ++++n+ s++++++++ 
  MMETSP1061-20121228|3428_1   8 NGKRKRQHRRSSASSASSMSSSSSNNPGGPTDYTPRNNNISNNNNNNNNN 57 
                 34445555555555555555555555444445677888887777776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 416.81
//
Query:       MMETSP1061-20121228|3427_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-104  347.3   0.4   1.7e-104  347.0   0.3    1.1  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    8.7e-16   55.6   0.4    8.7e-16   55.6   0.3    1.5  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    2.3e-08   31.7   0.0    3.2e-08   31.2   0.0    1.2  1  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
    1.1e-07   28.7   2.8    1.8e-05   21.5   0.3    2.8  3  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    4.6e-07   27.4   1.0    7.8e-07   26.6   0.7    1.3  1  TIGR02825 B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
    0.00052   16.8   0.4    0.00089   16.0   0.2    1.3  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0022   15.5   0.1     0.0037   14.8   0.1    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
     0.0048   13.8   0.2     0.0072   13.3   0.1    1.3  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
     0.0072   13.4   0.2      0.013   12.6   0.2    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
     0.0098   12.8   0.2      0.016   12.1   0.2    1.3  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
  ------ inclusion threshold ------
      0.024   12.2   0.1      0.039   11.5   0.1    1.3  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
       0.22    8.7   3.3      0.085   10.1   0.2    1.8  2  TIGR02415 23BDH: acetoin reductases


Domain annotation for each model (and alignments):
>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.0   0.3  4.9e-107  1.7e-104      26     322 ..     140     436 ..     114     438 .. 0.93

  Alignments for each domain:
  == domain 1    score: 347.0 bits;  conditional E-value: 4.9e-107
   TIGR02823  26 egdvlikvaysslNyKDalaitgkgkvvreyPlvpGiDlaGtvvesedprfkeGdeVivtgydlgvshaGGyseyarvkadwvv.plP..eglslkeamilGtAGfTAaLsvealekag.ltpeegevlVtGAtGgVgslavalLsklGyevvavtgkkeee.eylkelGakevisreeleeekkkplekerwagavDtvGgkvlanvlkqlkyggavaacGlaagaelettvlPfilRgvsllGidsvevplekreavWerlaedlkleeleelvkeisleelpevlekllagevkGRvvv 322
                 +  v +kv++sslNyKDal++ g+ +v+r++P++pGiD+aGt+v  +d+    G +V+vtgydlg++++GG++e + v+ dw+v p P   +  ++ am++GtAG+TA L+v++l +ag ++p++g vlVtGAtGgVgs+av+lL+klG+evva tgk e++ ++lk+lGa++v+ r+ le  +k+pl +  +a avDtvGg+ la++lk++++gg+vaacG+aag  ++ttvlPfilRgv+llG+dsve+ple++++vW++l+ +++  + e+ ++ei  + l+  l+k+l+g  +GR+v+
  MMETSP1061-20121228|3427_1 140 DATVRVKVTHSSLNYKDALSAAGNPGVTRSFPHTPGIDAAGTLVGGDDD----GASVLVTGYDLGMNTDGGFGESITVPRDWIVtPNPfgGEDAARTAMVYGTAGLTAGLCVQKLLTAGgAKPSDGTVLVTGATGGVGSVAVELLAKLGFEVVALTGKLETDeAWLKDLGASKVVGRDALEP-NKRPLLRPSYAHAVDTVGGEPLAQLLKTIQNGGSVAACGNAAGLGVKTTVLPFILRGVNLLGVDSVEIPLEQKKDVWNKLSGEWSCPKAEASAREIGRDALDGCLKKMLEGGSHGRTVL 436
                 567999***************************************9986....99***************************994345213457899*****************988877**************************************9987589***************99.6********************************************************************************************************************96 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.3   2.6e-18   8.7e-16      21     279 ..     133     397 ..     114     410 .. 0.84
   2 ?   -3.1   0.1       1.9   6.5e+02     139     149 ..     431     441 ..     426     442 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 2.6e-18
   TIGR02824  21 plpelk.agevlikvaAaGvNrpDvlQraGkYppppgaseilGLEvaGevvavgeevskfkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTv.......wsnlfelaklka.getvLihggasGiGttaiqlakalgakvlvtagsdekle.aaekLGadvainyreedFvevvkeetegkGvdvilDivggsyleknlkalakdGrlvliallggakaeldlakllakrltltgstlRarsaeeKaaiaael 279
                 p pe +    v++kv+ + +N  D l  aG+  +     + +G++ aG++v  +++ +++ v    +++ + Gg+ e ++v+ +  +  p+ +  ++aA  + ++ T+        + l++ ++ k+   tvL+ g+++G+G++a+ l  +lg +v++ +g+ e  e   ++LGa+ ++ +   d  e  k+      +   +D+vgg+ l++ lk++++ G +   +   g  ++  + + + + ++l g    + + e+K ++ ++l
  MMETSP1061-20121228|3427_1 133 PIPESGgDATVRVKVTHSSLNYKDALSAAGNPGVTRSFPHTPGIDAAGTLVGGDDDGASVLVTGYDLGMNTDGGFGESITVPRDW-IVTPNPFGGEDAARTAMVYGTAgltaglcVQKLLTAGGAKPsDGTVLVTGATGGVGSVAVELLAKLGFEVVALTGKLETDEaWLKDLGASKVVGR---DALEPNKRPLLRPSYAHAVDTVGGEPLAQLLKTIQNGGSVAACGNAAGLGVKTTVLPFILRGVNLLGVDSVEIPLEQKKDVWNKL 397
                 34443313479*******************************************99999888888899*************9875.66899********99999988643334335778888888873469******************************99988857899****99975...556777888788889999*******************************999999999999999988777777777777666665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.9
   TIGR02824 139 agetvLihgga 149
                 +g tvL+hg++
  MMETSP1061-20121228|3427_1 431 HGRTVLVHGAT 441
                 799******87 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   9.3e-11   3.2e-08     134     201 ..     245     312 ..     204     364 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 9.3e-11
   TIGR02817 134 llfdrlkieedvagekralliiGaaGGvgsiliqlarqlteltviatasraes.qewvkelGahavidh 201
                 l   +l  + +++ ++ ++l++Ga+GGvgs+++ l+ +l + +v+a + + e+ ++w+k+lGa +v+  
  MMETSP1061-20121228|3427_1 245 LCVQKLLTAGGAKPSDGTVLVTGATGGVGSVAVELLAKL-GFEVVALTGKLETdEAWLKDLGASKVVGR 312
                 45566666677788999*******************998.5788888888887357**********964 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0023      0.79      12      93 ..     116     196 ..     105     205 .. 0.73
   2 !   21.5   0.3   5.2e-08   1.8e-05     157     246 ..     221     317 ..     194     333 .. 0.69
   3 ?   -1.3   0.0      0.44   1.5e+02     186     209 ..     345     368 ..     337     385 .. 0.67

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0023
   TIGR01751  12 airkerdkdprkalrveqvpvpelgpd.evLvavmaagvnynnvWaalgePvsvlaarrkrgkddepfhiiGsdasGvvlrvG 93 
                  + ++ d+d   +   +  p+pe g d  v v+v  +++ny    +a g+P  + ++ +  g d+    ++G d    vl +G
  MMETSP1061-20121228|3427_1 116 RVEETDDGDFVGS--EQTLPIPESGGDaTVRVKVTHSSLNYKDALSAAGNPGVTRSFPHTPGIDAAGTLVGGDDDGASVLVTG 196
                 4444444444443..3458999987662688********************98888888888888877788777666666665 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 5.2e-08
   TIGR01751 157 PkhLtWeeaacllLtaata.......yrqLvgkkpaelkpGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaei.arelGaeavidrqdfdl 246
                 P+ +  e+aa + ++ +ta        ++L++  +a+  +G +vL+ Ga+GG+Gs+a+ l +  G   va   + +  e+  ++lGa+ v+ r + + 
  MMETSP1061-20121228|3427_1 221 PNPFGGEDAARTAMVYGTAgltaglcVQKLLTAGGAKPSDG-TVLVTGATGGVGSVAVELLAKLGFEVVALTGKLETDEAwLKDLGASKVVGRDALEP 317
                 33355667766666555552211111455665555555444.79****************************998877752678********998765 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.44
   TIGR01751 186 elkpGdavLiWGaaGGLGsyaiql 209
                 ++++G +v   G a GLG+ ++ l
  MMETSP1061-20121228|3427_1 345 TIQNGGSVAACGNAAGLGVKTTVL 368
                 566777777777777777766655 PP

>> TIGR02825  B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.7   2.3e-09   7.8e-07     116     241 ..     234     358 ..     224     370 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.3e-09
   TIGR02825 116 lalgtvgmpgltayfglleicgvkgge.tvlvnaaagavgsvvgqiaklkgckvvgaagsde.kvaylkklgfdvafnyktvksleetlkkaspdgydcyfdnvggefsntvirqmkkfgriaicgai 241
                 +  gt g+    +   ll   g+k  + tvlv+ a+g vgsv  ++    g +vv  +g  e   a+lk lg   +       +le   +      y    d vgge    +++ +++ g +a cg  
  MMETSP1061-20121228|3427_1 234 MVYGTAGLTAGLCVQKLLTAGGAKPSDgTVLVTGATGGVGSVAVELLAKLGFEVVALTGKLEtDEAWLKDLGASKVVGRD---ALEPNKRPLLRPSYAHAVDTVGGEPLAQLLKTIQNGGSVAACGNA 358
                 566777766555667899999**976549************9766555559999999998551679******99887765...566666666667899****************************75 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   2.6e-06   0.00089       2      50 ..     262     311 ..     261     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.6e-06
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrk.tsdrrnleeldvEiveG 50 
                 +vlvtGatG vGs  v+ll++ G ev +l+ k ++d++ l++l +  v+G
  MMETSP1061-20121228|3427_1 262 TVLVTGATGGVGSVAVELLAKLGFEVVALTGKlETDEAWLKDLGASKVVG 311
                 69*************************99855267788889999888887 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   1.1e-05    0.0037       4      47 ..     264     306 ..     262     314 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-05
   TIGR01829   4 lvtGglgGiGtaickrlakdGykvvanvapneerakewlqekev 47 
                 lvtG++gG+G+   + lak G++vva + ++ e+ ++wl++ ++
  MMETSP1061-20121228|3427_1 264 LVTGATGGVGSVAVELLAKLGFEVVALT-GKLETDEAWLKDLGA 306
                 8************************965.588888899887665 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   2.1e-05    0.0072     157     301 ..     248     406 ..     191     427 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.1e-05
   TIGR03201 157 qaavqag.lkkgd.lviviGv.GGvGgyavqvakalGaavvaidideeklem.vkkaGadlilnpkdi..sarevkkaikafakar..Glrst.ewkilevsGskpGqesaldllsfgatlvvv..G...ytmdkvevrlsklmafdaralGnwGcppd 301
                 q  + ag  k+ d  v+v G+ GGvG+ av++   lG  vva+  + e  e+ +k+ Ga+ ++    +    r + +   a+a +   G +++   k ++  Gs++    a +l + ++ l  +  G    ++d ve+ l +      +  G+w cp  
  MMETSP1061-20121228|3427_1 248 QKLLTAGgAKPSDgTVLVTGAtGGVGSVAVELLAKLGFEVVALTGKLETDEAwLKDLGASKVVGRDALepNKRPLLRPSYAHAVDTvgGEPLAqLLKTIQNGGSVAACGNAAGLGVKTTVLPFIlrGvnlLGVDSVEIPLEQKKDVWNKLSGEWSCPKA 406
                 5555554144444278889999********************987766666537888998877543333266777776667765433266666456778888888877777777777776643211322246778888888888888888888888654 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.2   3.8e-05     0.013       3      37 ..     262     296 ..     260     312 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.8e-05
   TIGR01963   3 valvtGaasGiglaiakelaaaGakvvvndleeea 37 
                 ++lvtGa++G+g    + la+ G++vv    + e+
  MMETSP1061-20121228|3427_1 262 TVLVTGATGGVGSVAVELLAKLGFEVVALTGKLET 296
                 89***********9999********9987655444 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   4.6e-05     0.016       1      30 [.     263     292 ..     263     310 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.6e-05
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvl 30 
                 vlvtGa G +Gs  ve l + G+ev al+ 
  MMETSP1061-20121228|3427_1 263 VLVTGATGGVGSVAVELLAKLGFEVVALTG 292
                 89*************************975 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00011     0.039       1      33 [.     263     295 ..     263     315 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00011
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterske 33 
                 +lvtGa+ g+G+  ++ lak g++vv  + + e
  MMETSP1061-20121228|3427_1 263 VLVTGATGGVGSVAVELLAKLGFEVVALTGKLE 295
                 69***********************98855433 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.86   2.9e+02     134     232 ..      20     116 ..       5     132 .. 0.59
   2 ?   10.1   0.2   0.00025     0.085       3      29 ..     263     289 ..     261     308 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.86
   TIGR02415 134 naasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelag.keigekleefsseiklGresePedvaelvsfl 232
                 n +s a+  + +  +a  s  + vr++  +a    +++ +   a+aP ++ t+  +   + ++   +    ++  ++ +++    r  + +d    v++ 
  MMETSP1061-20121228|3427_1  20 NCSSAAAA-SAS--TASRSLPHRVRSVSGAAFAFRSPRNFHGSAFAPSLASTSTARLGTTTTTTTTTtTTTSTPSTTRTRTPSPTRRAMSSDTNTFVAWR 116
                 43333332.222..23345567888888888888888888888999998888876544444443333244444445555555566777777777777775 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00025
   TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavav 29 
                  lvtGa+ G+G+  +e Lak Gf+v+ 
  MMETSP1061-20121228|3427_1 263 VLVTGATGGVGSVAVELLAKLGFEVVA 289
                 79**********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 1591.00
//
Query:       MMETSP1061-20121228|3425_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.9e-262  868.2   7.0   4.5e-262  868.0   4.9    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
   2.8e-157  522.4   3.1   3.3e-157  522.2   2.1    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   1.2e-117  391.2   2.5   1.5e-117  390.9   1.7    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   3.7e-106  353.7   4.5   4.5e-106  353.4   3.1    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
   8.2e-104  345.8   3.0     1e-103  345.5   2.1    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
   2.7e-102  341.0   2.6   3.2e-102  340.8   1.8    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    1.9e-90  301.6   1.9    2.5e-90  301.2   1.3    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    7.3e-90  299.8   3.0    8.8e-90  299.5   2.1    1.0  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    2.1e-72  242.3   2.6    2.7e-72  241.9   1.8    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    4.5e-15   52.9   3.0    3.1e-09   33.7   0.1    2.3  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  868.0   4.9  1.1e-264  4.5e-262       2     526 .]      13     544 ..      12     544 .. 0.98

  Alignments for each domain:
  == domain 1    score: 868.0 bits;  conditional E-value: 1.1e-264
   TIGR02344   2 vlvlnqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdve.deakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegv..eqlpyeavadaleviprtlvqncGvnvirtltelrakhaqe.....ekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddivsGvkkk 526
                 v+vln++t+r++Gr+aql+ni+aak+va+iirttlGp++mlkmlldp+Ggiv+tndGn+ilre+dv+hp+aks+ielsr+qdeevGdGttsvi+l+ ++laaaepfl +++hptv+++ay+kal  al+v+++l++++dv+ d++ + klv ssigtkf+srw+d +v++a++av+tv +++  g+   vd+kryakvekipGG+++d++vlkG+++ kd th+kmrr+ienpr++l+d+pleykkgesqtnvei++++dwn++l+leee+v+++c++iia kpd+v tekGvsdlaqhyl ka+i+a+rr+rktdnnr+ar++Gativ+r++e+ esd+Gt++Glfe++k+G+e+f++++ec+dpkacti+lrG+skdvlne+ernlqda++v+rnv+ +pkl+pGGGate+a +v+l+kk  +l g+  +q p+ av+daleviprtl+qncGv+virt+t+lr +ha++      k+a+G++G tG++ dm++ giwep++vk+qtik+aie a+++lriddivsG+kkk
  MMETSP1061-20121228|3425_1  13 VMVLNAKTQRQTGREAQLGNIRAAKSVANIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPTAKSMIELSRAQDEEVGDGTTSVIVLSAQVLAAAEPFLMNKYHPTVLCQAYTKALAYALEVCDDLAVTIDVQkDKEWICKLVLSSIGTKFSSRWNDQLVEMAIQAVTTVVQQTPGGKP-IVDLKRYAKVEKIPGGQLDDACVLKGIMIQKDTTHSKMRRRIENPRVLLIDSPLEYKKGESQTNVEITDDQDWNTMLRLEEEYVENMCKDIIAAKPDIVCTEKGVSDLAQHYLQKAGITAFRRLRKTDNNRVARATGATIVSRADEILESDIGTKCGLFEMRKVGNEWFCYFDECQDPKACTIVLRGGSKDVLNEIERNLQDAMQVVRNVVYDPKLLPGGGATEMALAVALHKKGLSLGGIgtQQAPFIAVGDALEVIPRTLAQNCGVSVIRTITALRQRHASAreagdLKCAVGVNGITGQLADMHDLGIWEPYSVKVQTIKSAIENACMILRIDDIVSGSKKK 544
                 9*******************************************************************************************************************************************82556699******************************999966665.8********************************************************************************************************************************************************************************************************************************************98754499************************************98877776789***************************************************97 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  522.2   2.1    8e-160  3.3e-157       2     519 ..      13     539 ..      12     541 .. 0.97

  Alignments for each domain:
  == domain 1    score: 522.2 bits;  conditional E-value: 8e-160
   TIGR02339   2 vlilkegtqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidve.dkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldn.ikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGe.aelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieG..reqlaveafadaleeiprilaenaGldpidalvelRakhekeg.....nknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                 v++l+  tqr++gr+a+  ni+aak va+++++tlGPr + kmL+d++G +++tnDG  il+e+d+ hP+ak ++e +++qdeevgDGtt+++vl+ ++l+ ae  l ++ hPtv+ + y+ka   alev d++a +idv+ dke + k++ +s+ +k++ ++ +d+l+e++++av++vv+++ +gk  vdl++  k+ek  Gg+++d+ +++Gi++ k+++h++m +r+en++++l+d ple +k e +++++it+ +  +++l  ee+++++m + i++a  ++v ++kg+ dlaqhyl+k+Gi a+rr +k D +++aratGa ivs  +ei esd+G+  +l e rkvg++   + ++++++ka ti+lrGg++ v++e+eR l+Da++vv++v+ d+k+++GgGa+e++la  l+++  +++G   +q  + a  dale ipr+la+n G+  i +++ lR++h++       +  +gv+  tg+++dm +lg++ep  vk q+iksa e a +ilriDd+++
  MMETSP1061-20121228|3425_1  13 VMVLNAKTQRQTGREAQLGNIRAAKSVANIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPTAKSMIELSRAQDEEVGDGTTSVIVLSAQVLAAAEPFLMNKYHPTVLCQAYTKALAYALEVCDDLAVTIDVQkDKEWICKLVLSSIGTKFS-SRWNDQLVEMAIQAVTTVVQQTPGGKPIVDLKRyAKVEKIPGGQLDDACVLKGIMIQKDTTHSKMRRRIENPRVLLIDSPLEYKKGESQTNVEITDDQDWNTMLRLEEEYVENMCKDIIAAKPDIVCTEKGVSDLAQHYLQKAGITAFRRLRKTDNNRVARATGATIVSRADEILESDIGTkCGLFEMRKVGNEWFCYFDECQDPKACTIVLRGGSKDVLNEIERNLQDAMQVVRNVVYDPKLLPGGGATEMALAVALHKKGLSLGGigTQQAPFIAVGDALEVIPRTLAQNCGVSVIRTITALRQRHASAReagdlKCAVGVNGITGQLADMHDLGIWEPYSVKVQTIKSAIENACMILRIDDIVS 539
                 89*****************************************************************************************************************************************86599****************.69*****************************97379************************************************************************************************************************************************735899******************************************************************************9853389999**********************************9643111224578********************************************86 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.9   1.7  3.6e-120  1.5e-117       4     519 ..      13     539 ..      10     543 .. 0.94

  Alignments for each domain:
  == domain 1    score: 390.9 bits;  conditional E-value: 3.6e-120
   TIGR02345   4 ivllkegtdtsqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk.......liGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGk.calfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkid..gkqqliieavakaleviPrslaenaGfdsieilnklrkkhak...kge..kwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetik 519
                 +++l+  t  + G+   + ni+a++++a+i++ttlGPr m k++ +     v++ndG  il+++d+ hP+ak +++++++qd+evGdGttsv+vl++++l +a p++ +  hp ++++a+ +al  a+e  +++av++d +k   +e + kl   ++ +k  ++ ++++++m ++av+++ ++    k          v k+ GG l+d+ ++kG+  +k  +   + +  ++++nP++ll++  le+k  + ++++ ++d +d+++++  e + + +  ++i+++  ++v +++ + dla  y+ +  i +  r+ + d +rv++atGa+i+s  +++ ++ +G+ c+lfe +++G+e + +f+++++ kact++lrGg++++l+e+er l+da+ +vr  + + k+++GGGa+e+ l+  l++k   +   g qq  + av++aleviPr+la+n G   i+++  lr++ha    +g+  +  Gv+  t +++d+ +  +weP  vk+ ++k+a+e a++il +d+ + 
  MMETSP1061-20121228|3425_1  13 VMVLNAKTQRQTGREAQLGNIRAAKSVANIIRTTLGPRSMLKMLLDPMGgIVMTNDGNCILREVDVSHPTAKSMIELSRAQDEEVGDGTTSVIVLSAQVLAAAEPFLMNKYHPTVLCQAYTKALAYALEVCDDLAVTIDVQK--DKEWICKLVLSSIGTKFSSRWNDQLVEMAIQAVTTVVQQTPGGKpivdlkrYAKVEKIPGGQLDDACVLKGIMIQKDTT---HSKMRRRIENPRVLLIDSPLEYKKGESQTNVEITDDQDWNTMLRLEEEYVENMCKDIIAAKPDIVCTEKGVSDLAQHYLQKAGITAFRRLRKTDNNRVARATGATIVSRADEILESDIGTkCGLFEMRKVGNEWFCYFDECQDPKACTIVLRGGSKDVLNEIERNLQDAMQVVRNVVYDPKLLPGGGATEMALAVALHKKGLSLGgiGTQQAPFIAVGDALEVIPRTLAQNCGVSVIRTITALRQRHASareAGDlkCAVGVNGITGQLADMHDLGIWEPYSVKVQTIKSAIENACMILRIDDIVS 539
                 7889999999*******************************999988775889**************************************************************************************443..369********************************998776666666666677899********************876...678899*****************************************************************************************************************99******************************************************************************98887622689999**********************************996553445477788888889**********************************9986 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.4   3.1  1.1e-108  4.5e-106      17     530 ..      17     539 ..       9     541 .. 0.94

  Alignments for each domain:
  == domain 1    score: 353.4 bits;  conditional E-value: 1.1e-108
   TIGR02343  17 qdkkkrlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadle...rkdvdfd.likvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGk.aklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgv..eqyairafaealeeiplalaensGldpietlsevkakqlkek.....npalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                 + k +r+ G ea+  ni aak+va+i+rt+lGp+ + k+l+++ g i++tndG  il+++d+ ++ ak ++els++qdee+GdGtt+v+vl++ +l  ae  l +  hp  +++ + ka+  a+e  +++a  i+v +++ke + k + +s+g+k  s+ +++l e+a++av +v++     +  vd++   kve+  Gg+l+d+ ++kGi+i+kd +h +m++++++ ++ ++  p+e  k  ++ +++i+  ++++++ + e+e+ e+m +di  +  ++v  + G  d a h l ++++ a r +  ++ + +a atg  iv+r +e+ e+++G+ ++l + +++G  ++ + + +++++ ka ti++rGg+k +++e +r l+da+ vvrn++ d +++ GGGa+e+a+++a++++   l g+  +q  + a ++ale ip +la+n G+  i t+++++++  + +     + a+Gv+  +    dm++l + e+++ k q i+ a +   mil+idd++s
  MMETSP1061-20121228|3425_1  17 NAKTQRQTGREAQLGNIRAAKSVANIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPTAKSMIELSRAQDEEVGDGTTSVIVLSAQVLAAAEPFLMNKYHPTVLCQAYTKALAYALEVCDDLAVTIDV-QKDKEWICKLVLSSIGTKFSSRWNDQLVEMAIQAVTTVVQQTpggKPIVDLKrYAKVEKIPGGQLDDACVLKGIMIQKDTTHSKMRRRIENPRVLLIDSPLEYKKGESQTNVEITDDQDWNTMLRLEEEYVENMCKDIIAAKPDIVCTEKGVSDLAQHYLQKAGITAFRRLRKTDNNRVARATGATIVSRADEILESDIGTkCGLFEMRKVG--NEWFCYFDECQDPKACTIVLRGGSKDVLNEIERNLQDAMQVVRNVVYDPKLLPGGGATEMALAVALHKKGLSLGGIgtQQAPFIAVGDALEVIPRTLAQNCGVSVIRTITALRQRHASAReagdlKCAVGVNGITGQLADMHDLGIWEPYSVKVQTIKSAIENACMILRIDDIVS 539
                 56789**********************************************************************************************************************************9.6779**********************************99863325568987357999999******************************************************************************************************************************************9627777777777..789*****************************************************************98887665327888******************************99887654112225789999999999***********************************97 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.5   2.1  2.5e-106    1e-103       6     515 ..      24     539 ..      19     541 .. 0.92

  Alignments for each domain:
  == domain 1    score: 345.5 bits;  conditional E-value: 2.5e-106
   TIGR02342   6 kpedvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdls.drealiksattslsskvvsqyssllaplavdavlkvidsek..dknvdlkdikvvkkl.GgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGk.aelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGv..esyivrafadalevipytlaenaGlnpikvvtelrnrhaq....Gek..taGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivl 515
                   ++ +  ni aak+va++irt+lGp+ m k++ +  G +++tndG+ il++++v hp+ak ++els+aqd e GdGttsv+vl+  +l aae +l ++ hpt++++++ +a++ al++ ++l+ ++d++ d+e + k + +s+ +k  s++ ++l  +a++av  v+++    +  vdlk    v+k+ Gg +dd+ +++G+++++ +++ +   +rie+ ++ li   l   k + + +v ++d ++ + +l+ e +y+ n++k i +a+ +++   k      v+dla h+l+k +i   + + + + + ++++ G++ v+  d++ +  +G+   l e  k+++        ++++ k+ ++++rG  k v++e er l da+ v+r +v++  l++GGGa e+ +a++l kk  +l G+  ++  + a  dalevip tla+n G++ i+++t lr+rha+    G+     G++   g+ +d+ +  +  p+ v++ +++ a e   +il+iddiv 
  MMETSP1061-20121228|3425_1  24 TGREAQLGNIRAAKSVANIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPTAKSMIELSRAQDEEVGDGTTSVIVLSAQVLAAAEPFLMNKYHPTVLCQAYTKALAYALEVCDDLAVTIDVQkDKEWICKLVLSSIGTKFSSRWNDQLVEMAIQAVTTVVQQTPggKPIVDLKRYAKVEKIpGGQLDDACVLKGIMIQKDTTH-SKMRRRIENPRVLLIDSPLEYKKGESQTNVEITDDQDWNTMLRLEEEYVENMCKDIIAAKPDIVCTEKG-----VSDLAQHYLQKAGITAFRRLRKTDNNRVARATGATIVSRADEILESDIGTkCGLFEMRKVGNEWFCYFDECQDP-KACTIVLRGGSKDVLNEIERNLQDAMQVVRNVVYDPKLLPGGGATEMALAVALHKKGLSLGGIgtQQAPFIAVGDALEVIPRTLAQNCGVSVIRTITALRQRHASareaGDLkcAVGVNGITGQLADMHDLGIWEPYSVKVQTIKSAIENACMILRIDDIVS 539
                 55677889************************************************************************************************************************7549999*******************************998654115679**998777776699*************999997.56789***********************************************************99996.....79****************************************99999997156666666688888888888765.899********************************************************997522677788999*****************************9722223332257888899**************************************96 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.8   1.8  7.9e-105  3.2e-102       4     530 ..      19     541 ..      16     545 .. 0.95

  Alignments for each domain:
  == domain 1    score: 340.8 bits;  conditional E-value: 7.9e-105
   TIGR02340   4 sGerksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsve.elgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPika.vnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgs..reqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklk 530
                 + +r++G++++  n+ a+ +vani++t+lGP  + kml+d +G +++tndG  il++++v hP+ak ++el+  qd+evGdGttsv++l+a++l  a+ ++ +k hPt++ + y  al  a++  ++ lav+++ +  ke +  ++  s+ +k  s   d + +++++av++v +++  g+    +k   ++ k +G+   +++++kG  ++  ++  +m++r+++++++l+d  l+ +k +  +++ ++d ++ +++ + e + v + +k i++a  ++v t kG+ dla+ yl  ag+ a rr++k+d +r+a+atGat+vs       +e le+ +  ++  ++  +++++    +   +  k+++i+lrG  + +l+e+er l da+ vv+ ++   k+++GgGa e+al++ l +   +lg    +q    +  +al +iP++la n++      ++ lr  ha+a  + +   +  +G++  +g+++d  ++G+ eP   kv+++k+a+e a  ilridd++  +
  MMETSP1061-20121228|3425_1  19 KTQRQTGREAQLGNIRAAKSVANIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPTAKSMIELSRAQDEEVGDGTTSVIVLSAQVLAAAEPFLMNKYHPTVLCQAYTKALAYALEVCDD-LAVTIDvQKDKEWICKLVLSSIGTKFSSRWNDQLVEMAIQAVTTVVQQTPGGKPIVDLKRyAKVEKIPGGQLDDACVLKGIMIQKDTTHSKMRRRIENPRVLLIDSPLEYKKGESQTNVEITDDQDWNTMLRLEEEYVENMCKDIIAAKPDIVCTEKGVSDLAQHYLQKAGITAFRRLRKTDNNRVARATGATIVSR-----ADEILESDIGTKCGLFEMRKVGNEWFCYFDECQDPKACTIVLRGGSKDVLNEIERNLQDAMQVVRNVVYDPKLLPGGGATEMALAVALHKKGLSLGGigTQQAPFIAVGDALEVIPRTLAQNCGVSVIRTITALRQRHASAREAGDL--KCAVGVNGITGQLADMHDLGIWEPYSVKVQTIKSAIENACMILRIDDIVSGS 541
                 6789**********************************************************************************************************************98776.555444156899999**********************************9***999998736899*********************************************************************************************************************************985.....689999988889999999*****************************************************************************8633577789999******************************999887744..4579*******************************************99755 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.2   1.3   6.2e-93   2.5e-90      16     519 ..      25     540 ..      12     545 .. 0.93

  Alignments for each domain:
  == domain 1    score: 301.2 bits;  conditional E-value: 6.2e-93
   TIGR02346  16 leeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsek...fnvd.nirvvkllGgslsdsevlkGlvlkreaegs.vk.rvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelG.lvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgl..eqyaikkfaeafeiiPrtlaenaGlnanevlskLyaah....kkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiima 519
                   ea l ni a k +++i+rt+lGP++m k++++ +  +++tnD   ilre++v hP+ak ++++s+aq+ee+GDgt  v+vl++++L+ ae ++   ++p+ + + y++al  alev ++l v ++   ++ke + k++ +s+ +k  ++ +d l+e+  +a+ tv+ + +      ++    +v k+ Gg+l d++vlkG+++++++  s ++ r ++ +v    +pl+ ++ e +  v + + ++     + ee+ +e++ k+i  +  +++ ++  vsdla+hy++k +i   +   k +  r++++ gat + r +     ++G ++   +++ +g++    + + ++  k  tivLrG  k++l++ier ++D ++vv+++v d +llpG+gate+ La +l+k + +l g+  +q  +   + a e+iPrtla+n+G+ +   +++L + h    + g+ + ++ ++  + ++ d+++  i++ ++ k   ik a e a+ +L++D i+  
  MMETSP1061-20121228|3425_1  25 GREAQLGNIRAAKSVANIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPTAKSMIELSRAQDEEVGDGTTSVIVLSAQVLAAAEPFLMNKYHPTVLCQAYTKALAYALEVCDDLAV-TIDVQKDKEWICKLVLSSIGTKFSSRwNDQLVEMAIQAVTTVVQQTPGGkpiVDLKrYAKVEKIPGGQLDDACVLKGIMIQKDTTHSkMRrRIENPRVLLIDSPLEYKKGESQTNVEITDDQDWNTMLRLEEEYVENMCKDIIAAKPDIVCTEKGVSDLAQHYLQKAGITAFRRLRKTDNNRVARATGATIVSRADEILESDIGtKCGLFEMRKVGNEWFCYFDECQD-PKACTIVLRGGSKDVLNEIERNLQDAMQVVRNVVYDPKLLPGGGATEMALAVALHKKGLSLGGIgtQQAPFIAVGDALEVIPRTLAQNCGVSVIRTITALRQRHasarEAGDLKCAVGVNGITGQLADMHDLGIWEPYSVKVQTIKSAIENACMILRIDDIVSG 540
                 4678899*******************************************************************************************************************87.5777889999************9998899*********9999877765433355542467999*******************986541545789**************************************************************************************************************5699***********999987766.99********************************************************99987743677899999****************************9888888999999*****999*************************************964 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.5   2.1   2.2e-92   8.8e-90       2     526 ..      13     541 ..      12     545 .. 0.93

  Alignments for each domain:
  == domain 1    score: 299.5 bits;  conditional E-value: 2.2e-92
   TIGR02347   2 vkllnkkaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeee....idlfmveil.emkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGya.GlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvk..GkaklgveafaeallviPkvlvensGydvqevlvkledeadear......evvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraG 526
                 v +ln k++ +   +a   n++aak+++++++t lGP+  lkml++  G i +t dGn +l+e+ + hPta+ +   + aqd+ +GdGtts+++l  ++l  ae ++ +  hP +l + +  a   ale  ++l + ++ + d+e + + + +s+ tk + +  d+l e+ ++av ++ +++      +dl    ++ ++      d+ +++G+++   + h +m+r+++n  +l ++  ley k e ++++   + ++ + +++ e ++v++  k ii  k            +v  +kG+  l+   l+k+gi a+rr ++ + +r+  a+G + +   +++ + ++G   Gl     +g+e + + +e+++Pk++ti+++g  +  l+ i+  ++d ++ v+n++ d  +++G ga e+al+ +l+++  s+   G ++    a+++al viP++l++n+G  v+ ++++l++++  ar        vgv+  tg+ ++ +  giw+ ysvk q+++sa   a+ +l +d+++   
  MMETSP1061-20121228|3425_1  13 VMVLNAKTQRQTGREAQLGNIRAAKSVANIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPTAKSMIELSRAQDEEVGDGTTSVIVLSAQVLAAAEPFLMNKYHPTVLCQAYTKALAYALEVCDDLAVTIDVQKDKEWICKLVLSSIGTKFSSRWNDQLVEMAIQAVTTVVQQTPGgkpiVDLKRYAKVeKIPGGQLDDACVLKGIMIQKDTTHSKMRRRIENPRVLLIDSPLEYKKGESQTNVEITDDQDWNTMLRLEEEYVENMCKDIIAAKPD----------IVCTEKGVSDLAQHYLQKAGITAFRRLRKTDNNRVARATGATIVSRADEILESDIGTKcGLFEMRKVGNEWFCYFDECQDPKACTIVLRGGSKDVLNEIERNLQDAMQVVRNVVYDPKLLPGGGATEMALAVALHKKGLSLGgiGTQQAPFIAVGDALEVIPRTLAQNCGVSVIRTITALRQRHASAReagdlkCAVGVNGITGQLADMHDLGIWEPYSVKVQTIKSAIENACMILRIDDIVSGS 541
                 6789999999999999999*****************************************************999*****************************************************************************************************99887642224689987655514666666788999**************************************************************99999987754..........566669*************************************************98615555578**********************************************************************99999722578999999*****************************999888666655567888889*************************************98654 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.9   1.8   6.6e-75   2.7e-72       2     514 ..      15     540 ..      14     544 .. 0.89

  Alignments for each domain:
  == domain 1    score: 241.9 bits;  conditional E-value: 6.6e-75
   TIGR02341   2 ilkdsaeeeraenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrl....kgst...nlea.iqiikklggklddsyldegfllekkigv.nqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklg.scdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvag..kkalaveafakalrqlptiladnagfdsaelvaklraahaegnst......agldleegeiadlrklgivesyklkravvssaaeaaevllrvdniika 514
                 +l+++++++ + +a+l  +  a +v +++++tlgp+ m k+ll      +iv+tndg  il+++ +  p+ak ++++s+ qd+evgdgttsv vl+a++l  ae ++ +k hp ++ + y +a++ ale     av    +  k +e + k+  +++++k  s+  d + ++a++av  +     g     +l++  ++ k+ gg+ldd+ + +g++++k     +  +rien ++l+ +++l+  k     ++v +        + + e e + +  + i + + ++    + + +  +  + +ag++a         +r+a  tg  ivs  de     +g +c l e   +g++ +  f  ++  +activlrg ++++l+e er l da+ v+ + v + +   ggg++e+ +a a++++     g   +     a + al+ +p  la+n g+     ++ lr  ha  +++      +g++   g++ad++ lgi e y +k + + sa e a ++lr+d+i+  
  MMETSP1061-20121228|3425_1  15 VLNAKTQRQTGREAQLGNIRAAKSVANIIRTTLGPRSMLKMLLDPMG--GIVMTNDGNCILREVDVSHPTAKSMIELSRAQDEEVGDGTTSVIVLSAQVLAAAEPFLMNKYHPTVLCQAYTKALAYALEVCDDLAVTIDVQ--KDKEWICKLVLSSIGTKFSSRWNDQLVEMAIQAVTTVvqqtPGGKpivDLKRyAKVEKIPGGQLDDACVLKGIMIQKDTTHsKMRRRIENPRVLLIDSPLEYKKGE-SQTNVEITDDQDWNTMLRLEEEYVENMCKDIIAAKPDIVCTEKGVSDLAQHYLQKAGITAFRRLRKTDNNRVARATGATIVSRADEILESDIGtKCGLFEMRKVGNEWFCYFDECQDPKACTIVLRGGSKDVLNEIERNLQDAMQVVRNVVYDPKLLPGGGATEMALAVALHKKGLSLGGigTQQAPFIAVGDALEVIPRTLAQNCGVSVIRTITALRQRHASAREAgdlkcaVGVNGITGQLADMHDLGIWEPYSVKVQTIKSAIENACMILRIDDIVSG 540
                 6788999999********************************98665..9*******************************************************************************998777654333..446777788888888899999999999999999876622222322222455424677899****************98776156789**************99876.46778888888899999***************************************************************************956******************************************************************************99888652266778899****************************99998776411121256666789*************************************975 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   7.5e-12   3.1e-09      16     223 ..      34     251 ..      22     257 .. 0.74
   2 !   19.3   0.3   1.7e-07     7e-05     388     524 ..     393     542 ..     381     544 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 7.5e-12
   TIGR02348  16 kGvdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkee...iaqv..ati....sanndeeiGeliaeamekvgkd..GvitveesksletelevveGmqfdrGyv.spyfv...tdaekmevelenplilitdk 223
                 +  +++a+ +++tlGP++   +l   +G   +t+dG  + +e++++++     ak + e ++  ++  GdGtt  +vl+  ++      +     p  l +   ka++ ++e  ++l+  ++ +++   i ++  ++i    s+  ++++ e+  +a+ +v ++  G   + + k    ++e + G q+d   v    ++   t ++km   +enp +l++d 
  MMETSP1061-20121228|3425_1  34 RAAKSVANIIRTTLGPRSMLKMLLDPMGGIVMTNDGNCILREVDVSHPT----AKSMIELSRAQDEEVGDGTTSVIVLSAQVLAAAEPFLMNKYHPTVLCQAYTKALAYALEVCDDLAVTIDVQKDkewICKLvlSSIgtkfSSRWNDQLVEMAIQAVTTVVQQtpGGKPIVDLKRY-AKVEKIPGGQLDDACVlKGIMIqkdTTHSKMRRRIENPRVLLIDS 251
                 556889*************9999999******************99886....56666788888999******************************************99999999988865554112433212222111145555666666666666665433355555555554.467777888887766514555533333567888899999999886 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.7e-07
   TIGR02348 388 kekkarvedalnatraavee.GivaGGGvallraaekleelkekse...dekvGveivkraleaPlrqiaenaGkdgavvvekvkek.........kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavvadkp 524
                  e    ++da++  r  v +  +++GGG++ + +a +l++   +      ++  +  v  ale   r++a+n+G      + +++++          +  vG n+ t++  d+ + Gi +p  v  ++++ a+  a ++l  + +v+  +
  MMETSP1061-20121228|3425_1 393 NEIERNLQDAMQVVRNVVYDpKLLPGGGATEMALAVALHKKGLSLGgigTQQAPFIAVGDALEVIPRTLAQNCGVSVIRTITALRQRhasareagdLKCAVGVNGITGQLADMHDLGIWEPYSVKVQTIKSAIENACMILRIDDIVSGSK 542
                 55567799*******999762689*******9999999985544432347778888899****************99888888776533333222223479***************************************9998887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.57
# Mc/sec: 1242.52
//
Query:       MMETSP1061-20121228|3432_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 1218.96
//
Query:       MMETSP1061-20121228|3429_1  [L=1063]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1063 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.12s 00:00:00.60 Elapsed: 00:00:00.62
# Mc/sec: 2262.97
//
Query:       MMETSP1061-20121228|3405_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 2116.71
//
Query:       MMETSP1061-20121228|3433_1  [L=815]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-87  290.2   0.0    5.1e-87  289.5   0.0    1.2  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    4.8e-44  148.4   0.0    8.7e-44  147.6   0.0    1.3  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    3.6e-14   50.0   0.4    2.1e-12   44.2   0.0    3.0  4  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.5   0.0   3.7e-90   5.1e-87       2     307 ..     100     428 ..      99     434 .. 0.96

  Alignments for each domain:
  == domain 1    score: 289.5 bits;  conditional E-value: 3.7e-90
   TIGR03182   2 eellelyremlliRrfEekaaqlYkkgkigGfvHlyiGqEAvavgleaalkeddsvitsYRdHghalaagveakevmaEllgketGvskGkGGsmHlfdkekkflGGhgivgaqvplatGlafaekyk....................kedevtlaffGdgavnqGqvyEslnlaalwklPvifviennkyamGtaverssaekdlakkgesfgikglevdGmdvlavreaakeavervragkgPvllelktyRfrgHslsDpakyRskeeveevk..krdpieklkkali.ekgllseeelkeiekevkaeveeavefaeespepdve 307
                 ++l++ly+ m++ R fE+ ++q Y++gki+Gf+Hl +GqE +   l  a+k++d+ ++ YR+H+ha+a gv++ +vmaEl++k+tG+++G GGsmH+fd+e+ f GG ++v +q+p a+G+a +  +                     ++d+++++f+G+g +++G   E ln aa  +lPv++++ +n  a+ t +   +++++++++g+ +gi+gl vdGmd  +v +  k +++++r+gkgP++l+++tyRf gHs +Dp++ R +++ ++++  ++dpi+ ++++ i + g+ +e+elk+ +ke+ a+v+eav+fa+esp p+ve
  MMETSP1061-20121228|3433_1 100 DRLMNLYKAMQMARGFENACNQQYMQGKIRGFMHLDNGQESIPGLLDYAIKQTDKKFSYYREHTHAIASGVDPGAVMAELFMKDTGTCRGAGGSMHIFDREQYFQGGWALVCEQLPYAAGAAKTILLDrhlgvsdddtyqkqnvappaDDDRISVVFVGEGGAQNGRTAELLNSAAKDNLPVLLLVIDNGRAINTFTPDIAQNSNVYEQGKHYGIPGLLVDGMDPADVAKGGKAVIDYIRSGKGPAILQVHTYRFNGHSPADPEHERGRKDEKSWArqEQDPIKGFETKYIdQLGVFTEDELKAAKKEIMAQVKEAVKFADESPMPPVE 428
                 7899**********************************************************************************************************************88877778899**************999******************************************************************************************************************9998777777765899******876551669*******************************986 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.6   0.0   6.3e-47   8.7e-44      15     320 ..      91     428 ..      79     441 .. 0.89

  Alignments for each domain:
  == domain 1    score: 147.6 bits;  conditional E-value: 6.3e-47
   TIGR03181  15 eelaaklseeelvelyremvltRrldekalalqRqGrlgtya.pllGqEAaqvgsalalrkeDvlvpsYRdaaallarGvk....leeillywrgdekgsklp.....eevnilpinvpigtqvlhAaGvAlalklkg....................ekevavayiGdGgtsegdfyealnfAavfkapvvfvvqNNqwAISvprskqtaaktlaqkavaagipgvqvDGnDvlAvyevvkealekArkgegPtLiEavtYRlgaHttaDdp.trYrskeeeeewkkkdPiarlr.kyLeekglldeekeeeleeeaeeevkeaveeveelpkpkve 320
                 ++ a++ ++++l++ly++m ++R +++ + +   qG++  +     GqE +     +a++++D  +++YR+++ ++a Gv+    ++e++    g+ +g   +     +e  +      + +q+++AaG+A  + l++                    +++++v+++G+Gg+ +g + e ln Aa  ++pv ++v  N+ AI + +    + +++++++  +gipg+ vDG+D   v +  k+ +++ r+g+gP ++ + tYR+  H+ aD   +r r++e+  + +++dPi+ ++ ky+ + g+++e++ +++++e+ ++vkeav+ ++e p p+ve
  MMETSP1061-20121228|3433_1  91 YDEAIEGDKDRLMNLYKAMQMARGFENACNQQYMQGKIRGFMhLDNGQESIPGLLDYAIKQTDKKFSYYREHTHAIASGVDpgavMAELFMKDTGTCRGAGGSmhifdREQYFQGGWALVCEQLPYAAGAAKTILLDRhlgvsdddtyqkqnvappadDDRISVVFVGEGGAQNGRTAELLNSAAKDNLPVLLLVIDNGRAINTFTPDIAQNSNVYEQGKHYGIPGLLVDGMDPADVAKGGKAVIDYIRSGKGPAILQVHTYRFNGHSPADPEhERGRKDEKSWARQEQDPIKGFEtKYIDQLGVFTEDELKAAKKEIMAQVKEAVKFADESPMPPVE 428
                 566778899*****************************66651579***********************************66666666666666666544333355455666667899*****************999**************9999889**************************************************************************************************************955255555555558889*******857999*****************************99998876 PP

>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.1   0.0    0.0088        12     132     178 ..     249     295 ..     242     314 .. 0.84
   2 ?   -2.7   0.0      0.25   3.4e+02     258     285 ..     336     363 ..     331     369 .. 0.86
   3 ?   -1.8   0.0      0.13   1.7e+02     353     385 ..     531     563 ..     511     565 .. 0.82
   4 !   44.2   0.0   1.6e-15   2.1e-12     482     596 ..     677     794 ..     659     798 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0088
   TIGR00204 132 adekvvaviGdGaltaGmalealnhaGdlkkdllvilndnemsisen 178
                 +d+  v  +G+G    G   e ln a + + ++l+++ dn  +i + 
  MMETSP1061-20121228|3433_1 249 DDRISVVFVGEGGAQNGRTAELLNSAAKDNLPVLLLVIDNGRAINTF 295
                 67788999********************************9998765 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.25
   TIGR00204 258 knakklkgPvllhvktkkGkGyklaekd 285
                  +++  kgP +l v+t +  G+++a+ +
  MMETSP1061-20121228|3433_1 336 DYIRSGKGPAILQVHTYRFNGHSPADPE 363
                 678899****************999865 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.13
   TIGR00204 353 ryfdvaiaeqhavtlaaalaieGlkPvvaiyst 385
                 r  d  i e h +  a +  ++G++P+v +  t
  MMETSP1061-20121228|3433_1 531 RAADEIIDEGHFIGKALGEGLNGYRPIVELMNT 563
                 56788899********************88766 PP

  == domain 4    score: 44.2 bits;  conditional E-value: 1.6e-15
   TIGR00204 482 kleiGksellrkgedilllgfGtlveealevaeelkekgieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsdqn...vlvpvkrlgipdefiehgtqeev 596
                  l+    e++  g+ + +l++   v+e++   e+++e+g+++ +++lr +kPld + i++ +++++k+ +l+e+++ GGvg+++   +s++       pvkrl + d  ++ +++ ev
  MMETSP1061-20121228|3433_1 677 VLHKASDEVVAAGNAVTVLTYLHGVKESMASIEAIQEEGFDIDLIELRSLKPLDMDTIRESLERTNKMCILDESTKSGGVGATISARISEELfdlLDAPVKRLCMDDAPVPYASSMEV 794
                 45555679999*************************************************************************99999986444679*********99999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.57
# Mc/sec: 1854.67
//
Query:       MMETSP1061-20121228|3434_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-15   55.2   0.0    2.7e-15   54.5   0.0    1.3  1  TIGR00112 proC: pyrroline-5-carboxylate reductase


Domain annotation for each model (and alignments):
>> TIGR00112  proC: pyrroline-5-carboxylate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   6.7e-19   2.7e-15       1     168 [.      83     277 ..      83     288 .. 0.85

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 6.7e-19
   TIGR00112   1 iaiiGaGnmgeallsgllkkg.....................akakkeilvierseeklaalakelg.......vevtsdaeeavkeadvvllavKPqdleevlaelkseektkeklliSilAGvtiekleqlleaekrvvRvmPNtaakv.gagvtaiaassevseeqkelveellkavGkvveve.eklldavtal 168
                 ++++G+G++++a+++gl++++                     + + ++++v +rse+k++al+++++        +vt+d++e+ +  ++++l+v Pq++++vl+ l    +   ++l+S++   ++e+l +  + ++  v  m  +++    +gv+ ++ + e+s ++++l+ +l+ a+G vv ++ e++l+a +  
  MMETSP1061-20121228|3434_1  83 VGFLGCGTIASAIARGLIRAAnnnnnnnsdnnnndndndndaVVSLDSVVVSRRSEAKSRALLDAYQksdafhyLSVTEDNQEILDRCNLIFLTVLPQQASSVLRGLDF--DPDRHVLVSLVSTANLEDLVKDSGLDRSRVAKMICLPSIAdHRGVALLCCG-ETSGTTRQLLVDLFGAMGGVVALDtEADLEACMVT 277
                 68*****************999******************986656777888888*********99988888888999999************************8887..66789*************998888775545445555554416899999999.5677789***********************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1625.12
//
Query:       MMETSP1061-20121228|3436_1  [L=1005]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   36.3   0.0    2.6e-09   35.1   0.0    1.6  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   6.2e-13   2.6e-09       5      56 ..     282     334 ..     278     335 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 6.2e-13
   TIGR01557   5 vWteelhrrFlqAvqklGgedkatPkkIlelmkv..eklTreqvkSHlQkyrlk 56 
                 +W  e+h+ F  A+ ++G  +   P+ I e+m    +++Tre  kSHlQkyr+ 
  MMETSP1061-20121228|3436_1 282 PWAFEEHKAFAAAIFEIGL-KNCSPSVIMENMRKqpRYITRERTKSHLQKYRQT 334
                 699****************.777*********863369**************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1005 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.54
# Mc/sec: 2456.46
//
Query:       MMETSP1061-20121228|3439_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 1719.86
//
Query:       MMETSP1061-20121228|3438_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.18s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1711.98
//
Query:       MMETSP1061-20121228|3443_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 367.27
//
Query:       MMETSP1061-20121228|3447_1  [L=852]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-57  190.4   0.0    1.8e-26   90.7   0.0    4.2  3  TIGR02651 RNase_Z: ribonuclease Z
    1.1e-39  134.2   1.0    2.9e-23   80.2   0.0    3.2  3  TIGR02649 true_RNase_BN: ribonuclease BN
    0.00037   17.6   0.0      0.027   11.5   0.0    2.2  2  TIGR02650 RNase_Z_T_toga: ribonuclease Z, Thermotoga type


Domain annotation for each model (and alignments):
>> TIGR02651  RNase_Z: ribonuclease Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0019       2.6       2      26 ..     354     378 ..     353     384 .. 0.91
   2 !   88.8   0.0   5.2e-29   7.2e-26      29     118 ..     415     509 ..     406     520 .. 0.92
   3 !   90.7   0.0   1.3e-29   1.8e-26     125     294 ..     618     814 ..     592     822 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0019
   TIGR02651   2 itfLGtggavPtkeRnlssialkle 26 
                 ++f+Gt++ +P+ +R +s+ al+l+
  MMETSP1061-20121228|3447_1 354 LIFIGTASCTPSITRGVSCTALRLH 378
                 79********************986 PP

  == domain 2    score: 88.8 bits;  conditional E-value: 5.2e-29
   TIGR02651  29 liLfDcGEgtQrqllks.kisfkkidkIfitHlHgDHilGLpGLlstlslq....erkepLtiygPkgikefiekllevsktklnyeikvkeiee 118
                 ++LfDcGE tQ q+ k+ +++++ki+kIf++H HgDH +GLpGLl  ++++    ++k p++iygP+g++  ++++l++s +++  + +v+e+++
  MMETSP1061-20121228|3447_1 415 TWLFDCGESTQLQIQKTsSVRPSKITKIFLSHAHGDHSFGLPGLLCLMGQDsegkGSKAPIDIYGPEGLRLWLRTALRYSVSRICPRYRVHELKD 509
                 7*************975279******************************988888899*************************99999999885 PP

  == domain 3    score: 90.7 bits;  conditional E-value: 1.3e-29
   TIGR02651 125 eeekfkvealeldHsveslgYrleekdkpgkldrekak...elgipa............gpllkklkegeeveledgkiikpedvlgeekkgrkvayvgDTrpleevielaknadlLiheat..fa....eeek......kkAkekgHstakeAaeiakeanvkkliLtHiSaryedeeeeelleeakkifentvia 294
                  ++++kv+a++++H+++++gY+++e ++pg+l  e +k   + +ipa             +++k l +g ++++ dg+++++++ ++++++grkv+++gDT+   ++ +la+nad+++heat  f     ++++      k A  +gHst   A ++ k+ ++k+liL H+Sary+++++ + +  + +i+e+++ a
  MMETSP1061-20121228|3447_1 618 GDSGVKVYAAPMSHGIPCVGYVVQEANRPGRLRDELVKpicQRNIPAlkkagfrhpmkaLAVIKDLPKGGSFTFPDGTVVTQKEAVEPARPGRKVVILGDTNSARSMENLARNADVVVHEATntFLpaleHKDAtlssvtKDAIFHGHSTPYLAGDFCKRVGAKRLILNHFSARYTGDQSMDSISIMTRIEEQAIKA 814
                 57899***************************99988755555665411111111111145689999*****************************************************9744432221122112222257899********************************88878888888887776655 PP

>> TIGR02649  true_RNase_BN: ribonuclease BN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.013        18       1      26 [.     353     378 ..     353     408 .. 0.81
   2 !   80.2   0.0   2.1e-26   2.9e-23      29     110 ..     411     497 ..     385     511 .. 0.84
   3 !   48.9   0.0   6.9e-17   9.5e-14     127     276 ..     619     794 ..     598     815 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.013
   TIGR02649   1 eliflgtsagvptrsrnvtaillnlq 26 
                 +lif+gt++  p+ +r v++  l+l 
  MMETSP1061-20121228|3447_1 353 DLIFIGTASCTPSITRGVSCTALRLH 378
                 59**********99999977766664 PP

  == domain 2    score: 80.2 bits;  conditional E-value: 2.1e-26
   TIGR02649  29 tqsglwlfdcgegtqhqllnta.fnpgklekifishlhgdhlfglpgllcsrsm....agiiqpltvygpqgvrefvetalrlsgsw 110
                 ++ g wlfdcge tq q+ +t+ ++p k+ kif+sh hgdh fglpgllc         g   p+ +ygp+g+r ++ talr s s 
  MMETSP1061-20121228|3447_1 411 SNLGTWLFDCGESTQLQIQKTSsVRPSKITKIFLSHAHGDHSFGLPGLLCLMGQdsegKGSKAPIDIYGPEGLRLWLRTALRYSVSR 497
                 45699*************9985389*************************7543111268899*******************99885 PP

  == domain 3    score: 48.9 bits;  conditional E-value: 6.9e-17
   TIGR02649 127 ddglrkvtayrlehplecygyrvvehdkpgal...........naralkaagvt.pg...plfqelkagktvtledgrqingadylaaavagkalaifgdtapceaaldlakgvdvmvheat......l...disme...ekanarghsstrqaatlareaavgkliithvssrydd 276
                 d g  kv a ++ h + c gy v+e ++pg l           n  alk ag   p     ++++l  g + t+ dg  +   + + +a +g+ + i+gdt+ + +  +la+  dv+vheat      l   d+++    + a   ghs+   a  +++  +  +li+ h s+ry  
  MMETSP1061-20121228|3447_1 619 DSG-VKVYAAPMSHGIPCVGYVVQEANRPGRLrdelvkpicqrNIPALKKAGFRhPMkalAVIKDLPKGGSFTFPDGTVVTQKEAVEPARPGRKVVILGDTNSARSMENLARNADVVVHEATntflpaLehkDATLSsvtKDAIFHGHSTPYLAGDFCKRVGAKRLILNHFSARYTG 794
                 334.58999*********************98444444444445679999997423211256889999****************************************************98444333133344443111456678*****************************64 PP

>> TIGR02650  RNase_Z_T_toga: ribonuclease Z, Thermotoga type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0     2e-05     0.027      22      83 ..     417     484 ..     408     511 .. 0.71
   2 !    3.7   0.0    0.0047       6.5     221     250 ..     765     794 ..     713     810 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2e-05
   TIGR02650  22 lfdagegvsttl..gskvy..afkyvflthghvdhiaglwgvvnirn.ngmgd.rekpldvfypkgnr 83 
                 lfd+ge     +   s v    +  +fl+h h dh  gl g++ +   +  g   + p+d++ p+g r
  MMETSP1061-20121228|3447_1 417 LFDCGESTQLQIqkTSSVRpsKITKIFLSHAHGDHSFGLPGLLCLMGqDSEGKgSKAPIDIYGPEGLR 484
                 77888765443311344541145679*************999887541333431346*********88 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0047
   TIGR02650 221 haaidevmesvkkagvkkvilyhistryir 250
                 h++     +  k+ g k++il h s+ry  
  MMETSP1061-20121228|3447_1 765 HSTPYLAGDFCKRVGAKRLILNHFSARYTG 794
                 5555555567899***************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.46u 0.18s 00:00:00.64 Elapsed: 00:00:00.44
# Mc/sec: 2555.79
//
Query:       MMETSP1061-20121228|3442_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-79  266.0  14.7    1.4e-79  265.6  10.2    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.6  10.2   3.4e-83   1.4e-79       1     295 [.      80     378 ..      80     383 .] 0.96

  Alignments for each domain:
  == domain 1    score: 265.6 bits;  conditional E-value: 3.4e-83
   TIGR00817   1 lqtgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk....sldklnlyalisililfllspiafiveglklltreflqaiskvn.vlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvk 295
                 lq+g +f+lwy++n+ +ni+nk+ l+++  p++++++++a g+l+   +w+ +l k++k++++ lk+l+p+a++ht  hv +  +l++ avSf h++ka ep+++ +++ +flg+++pl++yl+Llpi++Gva as++elsf +l++ sam+sn++  ar ++sKk++  k    +ld  nlya+++ ++ ++l p+ +++eg  + t +f ++++     +k  +v+l +  + + +y+ vaf  l++v p+t++vgN++KRvv+Iv+S++ f+t++s+   +G  +aiaG+ lYs   
  MMETSP1061-20121228|3442_1  80 LQIGTYFALWYLFNIAYNIYNKQALNVLDFPWTIATIQMATGILYFAPMWILGLRKAPKLNFSELKTLFPIALCHTGVHVGAVIALGAGAVSFAHIVKASEPVVTCLMNYLFLGQVLPLPVYLTLLPIIGGVAIASMKELSFTVLALASAMLSNVSSSARGVLSKKTMSGKaigeNLDAQNLYAVLTAMSTLVLVPTMLAIEGTGFFT-AFKDIVAAGDfTNKSLAVLLGLGGASYYAYNEVAFLALGKVNPVTHAVGNTIKRVVIIVASVVAFKTPMSTGSIIGSSIAIAGTLLYSLAM 378
                 799************************************************************************************************************************************************************************************************************9.99999876551456667788888889*************************************************************9754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1630.70
//
Query:       MMETSP1061-20121228|3449_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.7    6.0   7.8       0.26    9.6   0.2    2.3  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   6.3e-05      0.26       4      21 ..      20      37 ..      20      44 .. 0.85
   2 ?   -1.0   1.7      0.15   6.1e+02       7      16 ..      70      79 ..      70      79 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 6.3e-05
   TIGR01409  4 RdFLkaaaaagaaaglgl 21
                R+FLk+a+++ a++++++
  MMETSP1061-20121228|3449_1 20 RGFLKKAGMTMAVLTIFA 37
                9************99987 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.15
   TIGR01409  7 Lkaaaaagaa 16
                L++aaaa+aa
  MMETSP1061-20121228|3449_1 70 LQKAAAAAAA 79
                5667777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1645.15
//
Query:       MMETSP1061-20121228|3451_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.42    7.3  14.0       0.52    7.0   9.7    1.0  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
       0.64    7.0  25.1       0.76    6.8  17.4    1.0  1  TIGR02794 tolA_full: protein TolA
       0.68    5.8   7.5        0.7    5.8   5.2    1.0  1  TIGR00993 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
        4.8    3.4  16.6        5.3    3.2  11.5    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   9.7   0.00051      0.52     162     245 ..      17     104 ..       8     109 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00051
   TIGR01843 162 lqaqlqal.rqqleliseelealrkLkekglvsrl...elLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevse 245
                  q++++   +q  ++ +++++ ++kL+++++ ++l   + Le+e+++ae  + l++++ e + l a+  e++e+l e e+ f+ee ++
  MMETSP1061-20121228|3451_1  17 TQEKQELSpKQLKRIEEQKAREAKKLAKRKAKAELkerRALEKENKQAERDRRLEQEREENSGLSAKEMEARERLVEDEKLFAEEFLQ 104
                 44444444045555667788999****9999765422289********************************************9887 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  17.4   0.00074      0.76     124     184 ..      18      89 ..      10     109 .. 0.34

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00074
   TIGR02794 124 kkkqaeeakakqaaEakakaeaeaKa.ekkakeeAakkaEeeakakaa.aeakkkaEa.........e.eakk 184
                 ++kq+   k+ ++ E +++ ea+ K  ++kak+e++ +++ e++ k+a  + + ++E+         e ea+ 
  MMETSP1061-20121228|3451_1  18 QEKQELSPKQLKRIEEQKAREAK-KLaKRKAKAELKERRALEKENKQAeRDRRLEQEReensglsakEmEARE 89 
                 22333333332233332222221.1123333333322222222222221222222222111111111122222 PP

>> TIGR00993  3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.2   0.00068       0.7     423     484 ..      22      82 ..      12     115 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00068
   TIGR00993 423 klskeqrkayleeydyrvkllqkkqlreelkrmkelkkrgkelgesedgyseeedeenGapa 484
                 +ls +q k   e+     k l k++ + elk ++ l k+ k   e +    +e +e++G  a
  MMETSP1061-20121228|3451_1  22 ELSPKQLKRIEEQKAREAKKLAKRKAKAELKERRALEKENK-QAERDRRLEQEREENSGLSA 82 
                 57778888765555556799******************999.67778788777777777554 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  11.5    0.0052       5.3      46     132 ..      17     104 ..       5     123 .. 0.51

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0052
   TIGR03319  46 eakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklek.keeelekkekeleekekeleekeeeleellk 132
                  ++k+e   ++ ++++++++   k+l +r+++ + +e+r  +ke+k ++++++le+ +ee+   + ke+e++e+ +e+++  +ee l+
  MMETSP1061-20121228|3451_1  17 TQEKQELSPKQLKRIEEQKAREAKKLAKRKAKAELKERRALEKENKQAERDRRLEQeREENSGLSAKEMEARERLVEDEKLFAEEFLQ 104
                 3444444444444445555555555555555555555555555555555544443313444444555555555555555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       513  (0.125061); expected 82.0 (0.02)
Passed bias filter:                      251  (0.0611897); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 451.54
//
Query:       MMETSP1061-20121228|3452_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1874.92
//
Query:       MMETSP1061-20121228|3453_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1497.13
//
Query:       MMETSP1061-20121228|3454_1  [L=1877]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-22   78.3   0.1    1.9e-13   48.1   0.0    2.5  2  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   8.9e-11   3.6e-07       5      78 ..     162     242 ..     158     253 .. 0.83
   2 !   48.1   0.0   4.5e-17   1.9e-13     142     302 ..     371     547 ..     353     588 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 8.9e-11
   TIGR03921   5 eawkls..tGagvtVAViDtGvd.rhPrLpgev.aGgDlve..sgdged.dcdghGTlvAglIAarpaegsGfvGvAPdak 78 
                 ++w++   tG+g+tV + D Gv  ++ + +g+  ++ +  +    +++d + dghGT+vAg+I ++ +++  +vG+A +ak
  MMETSP1061-20121228|3454_1 162 DVWETYglTGKGITVRINDDGVYvSNKEFEGRFdDQENSCGqyLPNTMDqEEDGHGTSVAGIILGNANNDLCAVGIAHQAK 242
                 678876679*********************99965555555653444445889************************9997 PP

  == domain 2    score: 48.1 bits;  conditional E-value: 4.5e-17
   TIGR03921 142 vky.alekdvvvvAaagnegqdgsktvvyPAay..pgVlaVgsidrsgepssfslagpwvdvaApg...enlvslspggdglasavgespleGtSfAaplVsgvAaLvrskfpeltaaqvirrleaTarkpar..............grddsvGaGvvdpvaAlteevapeeekplsdaaa 302
                 +++    k+++   a+gn  ++g++ + +  +    + +++g+++++g  s++s++g    ++Apg   e+  +l + g g+ + v   + +GtSfA p+V gv+aL+ ++  +l+ ++v     +T ++ ++               +++ +G+Gvvd+ aA++++ +  + ++++ +a+
  MMETSP1061-20121228|3454_1 371 IRNgRDGKGIIFTYASGNSFAKGDN-INFSGWSnsRYTITIGAVGKDGLHSDYSTPGAALLLTAPGgdgEDFGKLMTAGLGTDKCV--DSGQGTSFACPVVTGVVALILEANSNLSWRDVQGIFAQTSQRVENdpldttdvvnaagfWHSNWYGFGVVDAKAAVEAA-MNWTLYSEELQAV 547
                 55545568889999*****999999.77777776689****************************822245555556665555554..7789**********************999998776666665543322110000001224578899***********998.4444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1877 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.85u 0.23s 00:00:01.08 Elapsed: 00:00:00.67
# Mc/sec: 3697.66
//
Query:       MMETSP1061-20121228|3456_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 884.82
//
Query:       MMETSP1061-20121228|3457_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1473.88
//
Query:       MMETSP1061-20121228|3464_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 313.47
//
Query:       MMETSP1061-20121228|3465_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.25
# Mc/sec: 216.46
//
Query:       MMETSP1061-20121228|3460_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.47
# Mc/sec: 2114.63
//
Query:       MMETSP1061-20121228|3463_1  [L=772]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.71
# Mc/sec: 1435.15
//
Query:       MMETSP1061-20121228|3466_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1826.73
//
Query:       MMETSP1061-20121228|3469_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.7   1.4      0.039   11.7   0.2    2.0  2  TIGR02221 cas_TM1812: CRISPR-associated protein, TM1812 family


Domain annotation for each model (and alignments):
>> TIGR02221  cas_TM1812: CRISPR-associated protein, TM1812 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   9.5e-06     0.039      82     136 ..     125     180 ..     114     189 .. 0.78
   2 ?   -1.6   0.0      0.11   4.6e+02     108     133 ..     323     348 ..     292     352 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.5e-06
   TIGR02221  82 skvdaallsele.eklveklgdkvllklipdavseskeqvdlfeslteevdkgdev 136
                 +++d+++l e++ e + ++++ + + +l+  a +e++e++ +f+++++ +++  + 
  MMETSP1061-20121228|3469_1 125 HAQDQEALVEEQgEDKHNRVTLRQTQVLVIPANDELSENFHVFDAVIQSINDARRA 180
                 4556666655550555556*******99999999999*************998765 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.11
   TIGR02221 108 lipdavseskeqvdlfeslteevdkg 133
                    d+ s+sk++ d++es+ ++++  
  MMETSP1061-20121228|3469_1 323 SSLDSSSGSKKEGDFYESIGSHIETF 348
                 34467788889999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 1828.99
//
Query:       MMETSP1061-20121228|3470_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 797.01
//
Query:       MMETSP1061-20121228|3472_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-13   47.4   0.0    3.1e-06   24.8   0.0    3.2  3  TIGR00041 DTMP_kinase: thymidylate kinase
     0.0083   13.6   0.0      0.014   12.9   0.0    1.3  1  TIGR00455 apsK: adenylylsulfate kinase
  ------ inclusion threshold ------
      0.012   12.3   0.0      0.017   11.8   0.0    1.1  1  TIGR00959 ffh: signal recognition particle protein
      0.021   12.3   0.1      0.039   11.4   0.1    1.4  1  TIGR00235 udk: uridine kinase
      0.066   10.4   1.3        0.1    9.8   0.9    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   3.8e-09   3.1e-06       5      30 ..      20      45 ..      17      71 .. 0.85
   2 !   12.7   0.0     2e-05     0.016      77     111 ..     121     155 ..      96     161 .. 0.82
   3 !    6.1   0.0    0.0022       1.8     126     150 ..     192     216 ..     181     226 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 3.8e-09
   TIGR00041  5 kfiviEGidGaGKTtqlellkkllke 30
                 +i iEG+dG+GKTt++++l ++++e
  MMETSP1061-20121228|3472_1 20 FLIEIEGLDGSGKTTLCQSLTQRMNE 45
                6899********************98 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2e-05
   TIGR00041  77 ehveekikpalaegklvisDRylfSslAYqglark 111
                 + +e  i    ++ ++v++DR++ S+lAY  + ++
  MMETSP1061-20121228|3472_1 121 YVLEYEIHHMSENVRVVVVDRWYASTLAYTVAYKG 155
                 666778888999999**************986665 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0022
   TIGR00041 126 qlkPdlvilLdidpevalerlskrg 150
                 +l+P+l + Ldidp+v   r+++r+
  MMETSP1061-20121228|3472_1 192 KLRPHLLLVLDIDPHVRRSRVAQRR 216
                 468*****************99886 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.7e-05     0.014       7      44 ..       8      45 ..       3      54 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.7e-05
   TIGR00455  7 keerkakkkqksvvlWltGlsgsGkstianalekkLee 44
                ++++++++ ++ +++ + Gl gsGk+t++++l ++++e
  MMETSP1061-20121228|3472_1  8 NNNNNNNNSKRRFLIEIEGLDGSGKTTLCQSLTQRMNE 45
                456677888999********************999876 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.1e-05     0.017      89     123 ..       9      43 ..       3      53 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.1e-05
   TIGR00959  89 saelklaekkpavillvGLqGsGKtttaaKlakkl 123
                 +++ + ++k+   i + GL GsGKtt +  l++++
  MMETSP1061-20121228|3472_1   9 NNNNNNNSKRRFLIEIEGLDGSGKTTLCQSLTQRM 43 
                 45556667777889999************999874 PP

>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.1   4.8e-05     0.039       4      38 ..      17      47 ..      12      74 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.8e-05
   TIGR00235  4 ektiiigiaGasgsGkttvaekivellkkekivli 38
                ++ ++i i G  gsGktt+ +++++ +++    ++
  MMETSP1061-20121228|3472_1 17 KRRFLIEIEGLDGSGKTTLCQSLTQRMNE----IL 47
                45699*******************99983....33 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.9   0.00013       0.1      24      78 ..      15      70 ..       3      77 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00013
   TIGR02315 24 eikkGelvaviGlsGaGkstllrsin.rlveissgsillegkevtklkkkelrklr 78
                + k+  l+ + Gl G+Gk+tl +s+  r++ei   +   + ++ ++   k++ k++
  MMETSP1061-20121228|3472_1 15 NSKRRFLIEIEGLDGSGKTTLCQSLTqRMNEILARNSNSNSNQNNQSTSKSKSKSK 70
                55566689999************996256665444333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                      198  (0.0482691); expected 82.0 (0.02)
Passed Vit filter:                        52  (0.0126767); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1043.91
//
Query:       MMETSP1061-20121228|3477_1  [L=987]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    9.2  18.8         78    1.2  13.0    3.3  1  TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein


Domain annotation for each model (and alignments):
>> TIGR02953  penta_MxKDx: pentapeptide MXKDX repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2  13.0     0.019        78      27      76 ..     431     485 ..     407     547 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.019
   TIGR02953  27 aMkkdamkkDaMkkdamakdaMskDamkkdam.....kkdamkkdgMkkDaMkkd 76 
                 +M++ +m++ +M +++m + +M + + +++++     +++  ++  M++ +M++ 
  MMETSP1061-20121228|3477_1 431 QMRQQQMQQQQMRQQQMRQQQMRQQQLQQQQLqqqqlQQQQLQQQQMQQQQMQQQ 485
                 4444444444444444444444444444444400000444444444555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (987 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1038  (0.253047); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        70  (0.0170648); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.25u 0.24s 00:00:01.49 Elapsed: 00:00:01.01
# Mc/sec: 1289.83
//
Query:       MMETSP1061-20121228|3481_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-158  525.3   0.0   2.4e-158  525.1   0.0    1.0  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    8.6e-55  184.0   0.0    1.2e-54  183.5   0.0    1.1  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    2.3e-25   87.1   0.0    3.2e-25   86.6   0.0    1.1  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    2.8e-19   67.1   0.0      4e-19   66.5   0.0    1.2  1  TIGR01141 hisC: histidinol-phosphate transaminase
    3.5e-19   66.9   0.0      9e-19   65.6   0.0    1.6  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    1.9e-18   64.5   0.0    5.7e-18   62.9   0.0    1.6  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    9.3e-18   62.2   0.0    4.7e-17   59.9   0.0    1.9  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    4.5e-17   59.8   0.0    1.6e-16   58.0   0.0    1.7  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
      1e-15   55.3   0.0    1.9e-15   54.5   0.0    1.5  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    1.9e-15   54.5   0.0    8.1e-15   52.4   0.0    2.0  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    8.1e-06   22.3   0.0    1.3e-05   21.6   0.0    1.2  1  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase


Domain annotation for each model (and alignments):
>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  525.1   0.0  6.6e-161  2.4e-158       2     400 ..      46     448 ..      45     450 .. 0.98

  Alignments for each domain:
  == domain 1    score: 525.1 bits;  conditional E-value: 6.6e-161
   TIGR03542   2 kvnehflklkssylfseiakkvkefrkknpea..diirlgiGdvtqPlakaviealkeaveelaseetfrGyGpeqGldllreaiaeeeykgridpeeifisdGakcdvarllelfgsdktvavqdPvyPvyvdsavlaGragvld.ddgkykkivylpctkenefiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslPksiyeiegakecaieirsfsktlGftGvrlgytvvPkelkvedgeslkklWerllctkfnGaslivqraaeavlakeglqqikeaisyymenarilrkaleaaglkvyGGenaPylWvklpegi.ssedffdkllkeaevvgtPGsGfGssGeGfvrlsalgkredivealerike 400
                 ++ne+f kl ++ylf+ei ++ + + ++npe+  +ii lgiGd+t+P+++++   l e +++l + e + GyG+eqG  llre+ia+  y+  id++e+f+sdGakcd++r++++fgs+ + avqdP+yPvyvd++v++G++g+ + ++ +y +ivy+ c  en+f+P+  + ++ d++ylCsPnnPtG+++tkeql ++v+  ke++s+++fdaay+ fi+++++Pksi+eiegak +aie++sfsk +GftGvrlg+tvvP  lk++dg+ ++++++r+++t fnGas+ivq+++ a l +eg+++i+e+i+yy+ena+ilr+++e+ g+ v+GG +aPy++v+lpe+i  s+d+f ++l +a+vv++PG GfG+ GeGf+rlsa++ r+ ++ea+er+ke
  MMETSP1061-20121228|3481_1  46 ERNENFAKLAGGYLFPEIGRRRNAYLEANPEMadRIISLGIGDTTKPIPPHILSGLVEGAKKLGTVEGYSGYGAEQGQGLLREKIAQVLYNDLIDASEVFVSDGAKCDIMRVQQMFGSKVVSAVQDPSYPVYVDTSVMMGQTGTQNaETMQYDNIVYMKCGPENGFFPDYESLPRADVVYLCSPNNPTGAAATKEQLTDMVNLCKERGSILVFDAAYAPFIRSENVPKSIFEIEGAKDVAIEVNSFSKYAGFTGVRLGWTVVPSGLKFKDGSLVRDDFNRVMTTAFNGASNIVQAGGLACLDEEGQKEINELIDYYLENAKILRETFEEIGYVVHGGTDAPYVFVELPEEIgGSWDAFSMILDKAQVVTIPGAGFGPGGEGFLRLSAFAPRDSVIEACERLKE 448
                 79****************************97436************************************************************************************************************9998999******************************************************************************************************************************************************************************************************998459***********************************************97 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.5   0.0   3.2e-57   1.2e-54      11     382 ..      57     448 ..      47     449 .. 0.84

  Alignments for each domain:
  == domain 1    score: 183.5 bits;  conditional E-value: 3.2e-57
   TIGR03540  11 Pylfaeidklkaekkak....GvdvidlgiGdPdlptpkeivealkkaaekpen....hryPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahlplafvnpGdivlvpdPgyPvykistllag........gepy....elPlkeendflPdldaipedvlkkakilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfdeykalsflevdgakdvaielhslsktynmtGWrigfav...G....nkeli.aalgkvksnvdsGvfqaiqeaaiaaleee.eevvkelrkvykkrrdllvealkkiGldvkkpkatfylWvkvPeGy.tsaefakklleeagvvvtpGvgfGesGeGyirisltvseerlkeaverlkk 382
                  ylf ei + ++  ++        +i+lgiGd   p p +i+  l++ a+k  +      y +++G   +r+++a+ + +    +l   +ev    G+k  i  ++  f     +  v dP+yPvy  ++ ++g        +  y    ++    en+f+Pd++++p     +a +++l  PnnPt+a a+ke + ++v+++ke + i+v+daay+  +  e+ + s++e++gakdvaie++s+sk    tG r+g++v   G    + +l+ + +++v +    G+ + +q  ++a l+ee ++ ++el++ y +  ++l e++++iG+ v+    + y++v+ Pe +  s +  + +l++a+vv  pG gfG  GeG++r+s   +++ + ea erlk+
  MMETSP1061-20121228|3481_1  57 GYLFPEIGRRRNAYLEAnpemADRIISLGIGDTTKPIPPHILSGLVEGAKKLGTvegySGYGAEQGQGLLREKIAQVLYN----DLIDASEVFVSDGAKCDIMRVQQMFG-SKVVSAVQDPSYPVYVDTSVMMGqtgtqnaeTMQYdnivYMKCGPENGFFPDYESLP-----RADVVYLCSPNNPTGAAATKEQLTDMVNLCKERGSILVFDAAYAPFIRSENVPKSIFEIEGAKDVAIEVNSFSKYAGFTGVRLGWTVvpsGlkfkDGSLVrDDFNRVMTTAFNGASNIVQAGGLACLDEEgQKEINELIDYYLENAKILRETFEEIGYVVHGGTDAPYVFVELPEEIgGSWDAFSMILDKAQVVTIPGAGFGPGGEGFLRLSAFAPRDSVIEACERLKE 448
                 5999999888776544311114459********************99998865411114689999*********997654....566678999999********998875.4567889********766666541111111144443322577789*********998.....799**********************************************************************************98443322222345536799**********************8763789****************************************97636899999******************************************97 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   8.7e-28   3.2e-25       2     343 ..      81     442 ..      80     449 .. 0.73

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 8.7e-28
   TIGR03537   2 lydfGtGdpkeptddfirkalld......avpevsqypsvlGekalreaiagylerrfgvkldpdaevlpsaGskeaifhlplafldpeeerkkviygtpgypvy........erGalfaggealk....vklkkedgflleldaveeailretkivwinyphnptGaeapasylkevaelareygiilasdecyae.iyseekpasvlevg..lenvlafhslskrsGmtGyr.......sgflaGdeelvsa.lrklrasvGvaspefvqaaataawsdd..ahvaerrkifkrkrdlfleflakkGlealasdatfylwvkvpegidak..syalrlleeGivvapGeafgageeeyvrvalvptleeceea 343
                 +  +G+Gd ++p ++ i   l++      +v   s y +  G+  lre ia+ l      +l  ++ev+ s G+k  i+ ++  f      +   ++ +p+ypvy        + G++ a++  +     +k  +e+gf+ + ++     l ++ +v++  p nptGa a+++ l ++++l++e g il+ d  ya  i se+ p+s++e++  ++  + + s sk +G tG r       sg+   d +lv+  ++++ ++      + vqa   a  +++  + ++e  + + ++ +++ e +++ G +++ +  + y++v+ pe i ++  ++++ l ++ +v  pG  fg+g+e+++r++    ++   ea
  MMETSP1061-20121228|3481_1  81 IISLGIGDTTKPIPPHILSGLVEgakklgTVEGYSGYGAEQGQGLLREKIAQVLYN----DLIDASEVFVSDGAKCDIMRVQQMFGS----KVVSAVQDPSYPVYvdtsvmmgQTGTQNAETMQYDnivyMKCGPENGFFPDYES-----LPRADVVYLCSPNNPTGAAATKEQLTDMVNLCKERGSILVFDAAYAPfIRSENVPKSIFEIEgaKDVAIEVNSFSKYAGFTGVRlgwtvvpSGLKFKDGSLVRDdFNRVMTTAFNGASNIVQAGGLACLDEEgqKEINELIDYYLENAKILRETFEEIGYVVHGGTDAPYVFVELPEEIGGSwdAFSMILDKAQVVTIPGAGFGPGGEGFLRLSAFAPRDSVIEA 442
                 6789****************99833322246667999999***********99854....445579****************99977....555678899999993332222234555555544331111333456666665555.....5569******************************************83556669*****9972245566789***********955555555666679999985255555555555556777777666655411334455556788999999*************************9877521455555556677779*************9655444444444 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   1.1e-21     4e-19      59     300 ..     125     395 ..      70     431 .. 0.75

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 1.1e-21
   TIGR01141  59 elkealakylg...veeenillgnGsdelielliraflepgdavlvleptysmYevsakiag...aevkevplked......gqedleavle..aakekvklvflasPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee....asvlellaeypnlvvlrTlSKafgLAglRvGyaiana.......eii.ealekvr.apyn.vsslaleaavaalrdsd..kiektveevkkererlleelkkleglevyeSkaNFvlikvked 300
                  l+e++a++l    +++ ++++++G+   i  + + f  +    +v +p+y +Y  ++ + g   ++ +e+   ++      g    + +        ++++v+l+sPnnPtG+  ++e+++++++   e   + V D AY  F ++    +s +e+    +  + + ++SK  g+ g+R+G +++         +++ + +++v  + +n  s+++++ ++a l+++   +i++ ++   ++ ++l e ++++ ++     +a +v+++++e+
  MMETSP1061-20121228|3481_1 125 LLREKIAQVLYndlIDASEVFVSDGAKCDIMRVQQMFGSKV-VSAVQDPSYPVYVDTSVMMGqtgTQNAETMQYDNivymkcG--PENGFFPdyESLPRADVVYLCSPNNPTGAAATKEQLTDMVNLCkErGSILVFDAAYAPFIRSenvpKSIFEIEGAKDVAIEVNSFSKYAGFTGVRLGWTVVPSglkfkdgSLVrDDFNRVMtTAFNgASNIVQAGGLACLDEEGqkEINELIDYYLENAKILRETFEEIGYVVHGGTDAPYVFVELPEE 395
                 46888999877799999**********99999888887665.4556899****965544443100322222222223444221..22222224468899***************************9987789***********99977755555555555555669****************9986511111114453568887525787578899999999999987789**********************98888888******999973 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   2.4e-21     9e-19      63     212 ..     139     310 ..     120     431 .. 0.74

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 2.4e-21
   TIGR01140  63 ldaesvlavnGaqeaiqllprllapkrv.lvlaptyseyaralraagaevvels.....................dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpaeslaalaea....lpglvVlrSltKffglaGlRlGfvvAepa 212
                 +da++v +  Ga+  i  ++++++ k v +v  p+y  y ++  + g + ++ +                     d e+l     +ad++ ++ PnNPtG + +ke+l+++++ +k+rg +lv D A++ f ++e++ +   +     +  + + S+ K  g+ G+RlG+ v +  
  MMETSP1061-20121228|3481_1 139 IDASEVFVSDGAKCDIMRVQQMFGSKVVsAVQDPSYPVYVDTSVMMGQTGTQNAetmqydnivymkcgpengffpDYESL----PRADVVYLCSPNNPTGAAATKEQLTDMVNLCKERGSILVFDAAYAPFIRSENVPKSIFEiegaKDVAIEVNSFSKYAGFTGVRLGWTVVPSG 310
                 46999**********************99999****999999988888777666677999********977766666666....5*********************************************99887555544433442566677****************9987654 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   1.5e-20   5.7e-18      23     401 ..      71     452 ..      63     453 .] 0.83

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 1.5e-20
   TIGR01265  23 lkkkpeeekpviklslGdPsvfgnlrtaeeaeeavadavrsgkfngYapsvGvlaareavaeylskeleakleaddvvltsGcsqaielviealanaganiLvPrPgfplYetlakal......glevrkyd......llpekdweidldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgdatfvplaklaskvPv.lslggiskrwlvPGWrlGWlivvdpkgiledt.vlqglkkllqli.ldpatlvqgAlpdilektpkeffekkikvlkenaelvyeelkeipgltcvkPegamyllvklelelleeikdDvdFceklvkEesvillPgsale..lenylRitltveksvleealeRikeFcer 401
                 l ++pe+   +i l++Gd +     +  +  +e  ++    + + gY++ +G    re +a+ l    +  ++a +v+++ G++  i  v +   +      v  P++p Y   + ++      + e  +yd      + pe+++  d ++l         ++ +  P+nP+G+  +++ l ++v+++++ + +++ D  Y+ ++ +++   ++ +++    v + +++ sk     G rlGW +v    +    + v++  ++++++   +++ +vq+   + l +  ++  ++ i+   ena+++ e+++ei +++      a y++v+l     eei    d ++ +++  +v+ +Pg  ++   e++lR++   +  ++ ea+eR+ke  ++
  MMETSP1061-20121228|3481_1  71 LEANPEMADRIISLGIGDTTKPIPPHILSGLVEGAKKLGTVEGYSGYGAEQGQGLLREKIAQVLY---NDLIDASEVFVSDGAKCDIMRVQQMFGS-KVVSAVQDPSYPVYVDTSVMMgqtgtqNAETMQYDnivymkCGPENGFFPDYESLPR-----ADVVYLCSPNNPTGAAATKEQLTDMVNLCKERGSILVFDAAYAPFIRSENVPKSIFEIEGAKDVaIEVNSFSKYAGFTGVRLGWTVVPSGLKFKDGSlVRDDFNRVMTTAfNGASNIVQAGGLACLDEEGQKEINELIDYYLENAKILRETFEEIGYVVHG-GTDAPYVFVELP----EEIGGSWDAFSMILDKAQVVTIPGAGFGpgGEGFLRLSAFAPRDSVIEACERLKEVLKK 452
                 6678888899********8877666666777888888888899********************99...6679***********9999766665543.44446899******6554433111111455556652222225688888888877754.....5578889******************************************999999999866554389*********************9999999999999**9988766157789***999999999999999*********************998654.67899***9876....6788899999*****************733699*********************98765 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   1.3e-19   4.7e-17      18     356 ..      76     446 ..      67     447 .. 0.74

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 1.3e-19
   TIGR03539  18 shpdGivdlsvGtPvdpvpalirealaeaada.......pgyPqtaGteelreaivdalerrlgvkgldeeavlPviGtkelvallPtllGlgagdtvviPevayPtyevgarlag......aeavaaddlteldp.............ekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWege.avsvldpevcggdlegllavhslskrsnlagyragfvaG.......dealvaelle.vrkhaGlmvpaPvqaamvaaladdehv..aeqkeryaarrellkaalekaGfriehseaglylWatrged...aretvdrlaelG.ilvaPGdfygeagkefvrvaltatderiaaaverl 356
                 + +d i+ l +G    p+p+ i + l+e a++        gy   +G   lre i++ l        +d+++v+   G+k  +  + +++G +  ++v  P  +yP y  ++ + g      ae++++d++  ++               + ++++l sP nPtG  +++e+l+ +v+l +erg +++ d  y+ +   ++ + s+++    +g ++  + v s+sk + ++g r g+ +        d  lv +  + v   a    +  vqa   a l+++ ++  +e  + y +  + l++++e+ G+ ++    + y++    e+   ++++ +++ ++  +++ PG  +g+ g+ f+r++  a  + + +a erl
  MMETSP1061-20121228|3481_1  76 EMADRIISLGIGDTTKPIPPHILSGLVEGAKKlgtvegySGYGAEQGQGLLREKIAQVL----YNDLIDASEVFVSDGAKCDIMRVQQMFGSKVVSAVQDP--SYPVYVDTSVMMGqtgtqnAETMQYDNIVYMKCgpengffpdyeslPRADVVYLCSPNNPTGAAATKEQLTDMVNLCKERGSILVFDAAYAPFIRSENvPKSIFEI---EGAKDVAIEVNSFSKYAGFTGVRLGWTVVpsglkfkDGSLVRDDFNrVMTTAFNGASNIVQAGGLACLDEEGQKeiNELIDYYLENAKILRETFEEIGYVVHGGTDAPYVFVELPEEiggSWDAFSMILDKAqVVTIPGAGFGPGGEGFLRLSAFAPRDSVIEACERL 446
                 56899*********************999976222222235566666666666666655....455588999*******************9999999888..699996655554422222266777777654332335555555544446799*****************************************98877658899985...57888899******************87511122223344443333022222223345577777777877655411455678999999***********************99988633379999887776527788***************9999999999999998 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   4.2e-19   1.6e-16      25     400 ..      73     451 ..      65     453 .] 0.79

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 4.2e-19
   TIGR01264  25 vkPnPekkviklsiGdPtvdgnlktseeavkalkesvdsgkynGyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaiealadaGenvlvPrPGfplyetlakal......dievkly......nlladedweidlkelesliddktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkgatflalaslssev.PilslgGlakrllvPGWrlGWliihdrkgvlrd..vkdGlkkl.sqrilGpntlvqGalkeilrktPqeyfdgvvsvlesnadlvyealaevvGlkpvkPkGamyllvkielekfkelksdvefveklveeesvfvlPgsifel..Pgylrvvltvpkavleeavsrikefce 400
                  +P+   ++i+l iGd t     +  +  v+  k+    + y Gy++ +G+   re+ia+       ++ ++a +v ++ G+   + + ++ +  +     v  P +p y   +  +      + e+  y      ++ +++ +  d + l      ++ ++ +  P nP+G+  +++ l +++ l+++   +++ d  y+ ++ ++   +++ +++      + ++  +k     G rlGW ++    +   +  v+d + ++ ++   G++ +vq      l +  q+ ++++++   +na+++ e++ e+ G ++     a y++v++  e    +    + +  +++  +v  +Pg+ f     g+lr+    p   + ea++r+ke  +
  MMETSP1061-20121228|3481_1  73 ANPEMADRIISLGIGDTTKPIPPHILSGLVEGAKKLGTVEGYSGYGAEQGQGLLREKIAQVLY----NDLIDASEVFVSDGAKCDI-MRVQQMFGSKVVSAVQDPSYPVYVDTSVMMgqtgtqNAETMQYdnivymKCGPENGFFPDYESLP-----RADVVYLCSPNNPTGAAATKEQLTDMVNLCKERGSILVFDAAYAPFIRSENVPKSIFEIEGAKdVAIEVNSFSKYAGFTGVRLGWTVVPSGLKFKDGslVRDDFNRVmTTAFNGASNIVQAGGLACLDEEGQKEINELIDYYLENAKILRETFEEI-GYVVHGGTDAPYVFVELPEE----IGGSWDAFSMILDKAQVVTIPGAGFGPggEGFLRLSAFAPRDSVIEACERLKEVLK 451
                 56677789********997777677778899999999999********************988....7889999999988887776.45555544444446888899888643332200001123333331000013455566655555553.....57789999************************************************9998654156899******************98866555445599999986156678*******99999****************************998.777888899*****998765....445677789999*************852258*********************9866 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   5.1e-18   1.9e-15      18     394 ..      68     449 ..      48     450 .. 0.69

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 5.1e-18
   TIGR03538  18 ellkdvtppadleeialsiGePkhatPafvlealvenleel......skyPttkGlpelreaiaeWlerrfelpagvdperqvlPvnGtrealfafvqa........vidrae....kalvvlPnPfyqiyeGaallagaepyflnctaengfkpdfdavpeevWkrvqllfvcsPgnPtGavlsleelkklleladkydfiiasdecyselyldeaeaPvGlleaaaelGrddfkrllvfhslskrsnvPGlr.......sGfvaGdaell.keflryrtyhGcampiavqlasiaaWede..khvrenralyrekfaavleilgavld.lelPdasfylWlkvpd...gddeafaralyeeenvkvlpGrylsreaegvnPGegrvrlalvaeleecveaaerikkl 394
                 ++  ++ p    + i+l iG+   + P  +l  lve  ++l      s y + +G+  lre ia+ l +    +      ++v+   G++  ++ + q         v d++     ++ v++     q    a  +   ++++++c +engf pd++++p     r+ ++++csP+nPtGa  ++e+l+ +++l ++ + i+  d  y+ +    ++ P  ++e     G +d+   +  +s+sk +   G+r       sG+   d +l+ ++f r  t      +  vq+  +a  ++e  k ++e  + y e  + + e ++++   ++    + y++++ p+   g  +af  ++ ++++v ++pG+ +      +  Geg++rl+  a+ ++ +ea er+k++
  MMETSP1061-20121228|3481_1  68 NAYLEANPEMADRIISLGIGDTTKPIPPHILSGLVEGAKKLgtvegySGYGAEQGQGLLREKIAQVLYNDLIDA------SEVFVSDGAKCDIMRVQQMfgskvvsaVQDPSYpvyvDTSVMMGQTGTQ---NAETMQYDNIVYMKCGPENGFFPDYESLP-----RADVVYLCSPNNPTGAAATKEQLTDMVNLCKERGSILVFDAAYAPFIR-SENVPKSIFEIE---GAKDV--AIEVNSFSKYAGFTGVRlgwtvvpSGLKFKDGSLVrDDFNRVMTTAFNGASNIVQAGGLACLDEEgqKEINELIDYYLENAKILRETFEEIGYvVHGGTDAPYVFVELPEeigGSWDAF-SMILDKAQVVTIPGAGF------GPGGEGFLRLSAFAPRDSVIEACERLKEV 449
                 55556778888899***********999999999986655522222267999*************987654333......4555555666555554443111100003333333333333333333333...45556667899*****************9.....689*****************************************9877.556999998864...55454..46778999999999998222222234444587777246988888776667777888888888777324566666778888887777777764414455667788888765111333444.46678888888999644......34578899999999999999999998876 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   2.2e-17   8.1e-15      68     340 ..     140     431 ..     116     450 .. 0.57

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 2.2e-17
   TIGR03947  68 daekvlvthGsseaiylvltallrPGdevv..vvdpayhslselavalgakvrr............wplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvydaep...lpepsaaadrvisfgtlskafGlpGlrvGWcvaPkdll.aelvrlrdyltlslsPlvellaevavehadalieprlaearanrrrlldWaaahedvvrlt......vPeGGvaa...fprf.agladvtdlCerllarhgvlvvPGscfGaadr..vrlG 340
                 da +v+v+ G+   i+ v +     G +vv  v+dp+y   ++ +v++g + ++            ++  +e++f pd + l     +r+ +v +  P+nPtGa+ ++++l+++++l +e g++l++daa+a ++ + ++   + e   a d +i ++ +sk  G++G+r+GW+v+P  l   +   +rd     ++   +   +  + +a  l     +e ++  ++l d+  ++  ++r t      v +GG  a   f+++  + +   d    +l++ +v+++PG+ fG   +  +rl 
  MMETSP1061-20121228|3481_1 140 DASEVFVSDGAKCDIMRVQQ---MFGSKVVsaVQDPSYPVYVDTSVMMGQTGTQnaetmqydnivyMKCGPENGFFPDYESL-----PRADVVYLCSPNNPTGAAATKEQLTDMVNLCKERGSILVFDAAYAPFIRSENVpksIFEIEGAKDVAIEVNSFSKYAGFTGVRLGWTVVPSGLKfKDGSLVRDDFNRVMTTAFN--GASNIVQAGGLA-CLDEEGQKEINELIDYYLENAKILRETfeeigyVVHGGTDApyvFVELpEEIGGSWDAFSMILDKAQVVTIPGAGFGPGGEgfLRLS 431
                 55566666655555443333...33556654466666666666666555443330000000000002222333444444333.....89999999**************************************998765422255677889999************************99525677888876655443322..233333344332.233445555555555555555555544111111223444442113333223344555666666777777777777765544445555 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.5e-08   1.3e-05     242     321 ..     222     304 ..     216     310 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3.5e-08
   TIGR03801 242 kalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvygtfvdd...frsllaelp..antilvysfskyfgatGWrlgv 321
                  ++++  P+nP++ a ++e++  ++++ +e+    +++ D  y+ f  +    +s++        +i v sfsky g tG rlg 
  MMETSP1061-20121228|3481_1 222 DVVYLCSPNNPTGAAATKEQLTDMVNLCKER--GSILVFDAAYAPFIRSenvPKSIFEIEGakDVAIEVNSFSKYAGFTGVRLGW 304
                 678999********************99983..446678*******75411247999765411457889**************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1390.49
//
Query:       MMETSP1061-20121228|3488_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 516.48
//
Query:       MMETSP1061-20121228|3482_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.10s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2930.16
//
Query:       MMETSP1061-20121228|3489_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 680.25
//
Query:       MMETSP1061-20121228|3483_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   11.5   0.0      0.089   10.4   0.0    1.5  1  TIGR02611 TIGR02611: TIGR02611 family protein


Domain annotation for each model (and alignments):
>> TIGR02611  TIGR02611: TIGR02611 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.2e-05     0.089      36      68 ..      22      54 ..       4      58 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.2e-05
   TIGR02611 36 lvvGiiilPlPgpGWlvvFiglailslefrwak 68
                l+v   ++P+ g GW v F + a +sl ++w +
  MMETSP1061-20121228|3483_1 22 LLVAATMMPTNGRGWSVCFPATAAFSLPQSWQS 54
                44556799*******************999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 1928.19
//
Query:       MMETSP1061-20121228|3495_1  [L=947]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (947 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.57
# Mc/sec: 2155.06
//
Query:       MMETSP1061-20121228|3492_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 806.60
//
Query:       MMETSP1061-20121228|3476_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1369.96
//
Query:       MMETSP1061-20121228|3493_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|3496_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1706.65
//
Query:       MMETSP1061-20121228|3498_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 541.85
//
Query:       MMETSP1061-20121228|3500_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-10   37.8   0.0    2.8e-10   37.5   0.0    1.1  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    1.2e-05   22.4   0.0    1.5e-05   22.0   0.0    1.1  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    0.00054   16.7   0.0    0.00065   16.4   0.0    1.1  1  TIGR02079 THD1: threonine dehydratase
     0.0063   13.4   0.0     0.0082   13.1   0.0    1.1  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA


Domain annotation for each model (and alignments):
>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   2.8e-13   2.8e-10       1      59 [.      46     108 ..      46     116 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 2.8e-13
   TIGR02991   1 vslddieraaeriagrveetplvesesl...se.llGvpvllklesrqttGsfklrGatnavl 59 
                 +s++d++ aa+ri g v++tp+++  sl   se   G++  +k+e+ q tGsfk+rGa nav 
  MMETSP1061-20121228|3500_1  46 ISFEDVQDAADRIFGTVHKTPVMTCRSLiasSEhDDGKNYFFKVEAMQKTGSFKFRGALNAVR 108
                 6899*******************99998443231359999*********************95 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.5e-08   1.5e-05      14      42 ..      82     110 ..      70     118 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.5e-08
   TIGR01127  14 gaevylklenlqktGsfkirGalnkiakl 42 
                 g + ++k+e++qktGsfk rGaln ++  
  MMETSP1061-20121228|3500_1  82 GKNYFFKVEAMQKTGSFKFRGALNAVRYH 110
                 567789******************98765 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.3e-07   0.00065       1      56 [.      49     108 ..      49     122 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.3e-07
   TIGR02079   1 ediekakkrlkevvketPlqknerl...seky.kaeiylkredlqevrsyklrGaynklk 56 
                 ed+++a+ r+   v++tP+++   l   se+  + + ++k e +q+  s+k rGa n+++
  MMETSP1061-20121228|3500_1  49 EDVQDAADRIFGTVHKTPVMTCRSLiasSEHDdGKNYFFKVEAMQKTGSFKFRGALNAVR 108
                 5899****************9888833233331468999******************984 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0     8e-06    0.0082       5      59 ..      62     120 ..      58     126 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 8e-06
   TIGR03945   5 igntplvkleklfe....dekvelfaKlEglnpagSvKdrtAlallekaikegeikpgt 59 
                 +++tp+++ ++l++    d+  + f K+E +  +gS K r Al+ ++  +++  i++++
  MMETSP1061-20121228|3500_1  62 VHKTPVMTCRSLIAssehDDGKNYFFKVEAMQKTGSFKFRGALNAVRYHLEHAIISENE 120
                 556666665555541111455689************************99999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 745.10
//
Query:       MMETSP1061-20121228|3504_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 545.17
//
Query:       MMETSP1061-20121228|3502_1  [L=1164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.4    3.0   8.5         15    2.1   5.9    1.4  1  TIGR00806 rfc: reduced folate carrier


Domain annotation for each model (and alignments):
>> TIGR00806  rfc: reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   5.9    0.0036        15     448     493 ..     113     158 ..      88     186 .. 0.42

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0036
   TIGR00806 448 ylkrgreqelaqaqelrspeeeavqalslqdrdlraaqpsavqlle 493
                   kr++ ++  q+q++++ +++ +q++  q ++++++q + +q  +
  MMETSP1061-20121228|3502_1 113 AAKRTTTNNXKQQQQQQQQQQQQQQQQQQQQQKQQQQQKQQQQQQQ 158
                 3333333333322222211111111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       874  (0.213067); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        68  (0.0165773); expected 4.1 (0.001)
Passed Fwd filter:                        27  (0.00658216); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.13u 0.14s 00:00:01.27 Elapsed: 00:00:00.64
# Mc/sec: 2400.55
//
Query:       MMETSP1061-20121228|3507_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    4.7  17.5        1.6    4.8  12.1    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  12.1    0.0004       1.6     321     374 ..      34      87 ..       2      90 .] 0.43

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0004
   TIGR02442 321 keekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeae 374
                 ++e+ ++++++ +++d++++d+++e++++++ +++e+++++dde++e++ e+++
  MMETSP1061-20121228|3507_1  34 RDEEMNDNNENDDENDNNENDDENENNDDNNDENNENNDDNDDENNENNDENND 87 
                 223333333333333333333332222222222223344444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 456.89
//
Query:       MMETSP1061-20121228|3513_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 402.91
//
Query:       MMETSP1061-20121228|3510_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 825.87
//
Query:       MMETSP1061-20121228|3514_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 533.46
//
Query:       MMETSP1061-20121228|3516_1  [L=866]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.71
# Mc/sec: 1609.90
//
Query:       MMETSP1061-20121228|3525_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 1060.63
//
Query:       MMETSP1061-20121228|3511_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   22.9   1.3      2e-05   22.3   0.0    1.8  2  TIGR00922 nusG: transcription termination/antitermination factor NusG


Domain annotation for each model (and alignments):
>> TIGR00922  nusG: transcription termination/antitermination factor NusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.9e-09     2e-05       1      81 [.      50     131 ..      50     170 .. 0.85
   2 ?   -1.6   0.1      0.11   4.5e+02      10      32 ..     210     232 ..     202     245 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4.9e-09
   TIGR00922   1 WYvvqvasgkEkkvkenleklveeeglkdlikevivPaeevveikkgkkkvverki.fPgYilikvdlndkswkavkktpkV 81 
                 WY ++  +g E    +++++l+e+   k  + + +vP+  ++  + +++ v e k+ + gY++ k++l+ ++++ ++k+   
  MMETSP1061-20121228|3511_1  50 WYLLNCVAGLEMDLLRQVKQLAEDVLPKKDVVKFVVPTVTKTRSHGANRMVRETKVkYQGYVFAKLRLTKETYEPIRKMDLC 131
                 *************************999999999********9999999999999879******************996543 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.11
   TIGR00922  10 kEkkvkenleklveeeglkdlik 32 
                  E++++++++++ +  +++d+ik
  MMETSP1061-20121228|3511_1 210 LEQSIEKEVQTVYKGLKVEDMIK 232
                 57888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.11s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 2385.96
//
Query:       MMETSP1061-20121228|3518_1  [L=1159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.15s 00:00:00.71 Elapsed: 00:00:00.49
# Mc/sec: 3121.95
//
Query:       MMETSP1061-20121228|3526_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 342.19
//
Query:       MMETSP1061-20121228|3528_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-11   41.4   0.7    7.5e-07   26.9   0.1    3.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00056   16.8   1.2        0.3    7.9   0.1    2.9  3  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00014      0.28       1      37 [.       1      37 [.       1      50 [. 0.77
   2 !   26.9   0.1   3.6e-10   7.5e-07      46     140 ..     135     249 ..     117     262 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00014
   TIGR00231  1 tkeikivivGhvdvGKstLlnsllknkisiteskpgv 37
                +k+ k v++G  ++GK+++l ++ + +   + + p+v
  MMETSP1061-20121228|3528_1  1 MKKTKFVLLGGQNAGKTSILRRYFQGTFYGDCRLPTV 37
                688899***************9988775444455555 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 3.6e-10
   TIGR00231  46 ieedGktykvnllDTaGqedf.dairrlyvre..verslevvdivilvldveeg.....lekqtkei.........iheakkkgvpiilvvnKiDlkd......dlktkvkslfakln 140
                   +++  + ++++DT+G+e+f + + + ++++  ++ +l+++d v lv dv++      + ++++e+         +he++    pi++v+nKiD+ +      ++  +  +++ +  
  MMETSP1061-20121228|3528_1 135 RDRRP--ISIQVWDTPGRERFvNTDGKTRFTAsfSDNFLKDIDAVCLVYDVSSStsfthVLNWYYELmerlrrmkaNHERR-RHLPIVIVGNKIDIIQdrdnarQFRRQREEVLRNRR 249
                 34455..88********999835566666555225889**********999875222223466655522222222145555.889*************66555545554444444444 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.15   3.2e+02     176     192 ..       4      20 ..       2      25 .. 0.72
   2 !    7.9   0.1   0.00015       0.3     283     316 ..     212     245 ..     127     255 .. 0.80
   3 !    6.6   0.0   0.00036      0.73     138     172 ..     391     425 ..     369     436 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.15
   TIGR03594 176 ikiaiiGrpNvGKStLv 192
                 +k+ ++G  N+GK +++
  MMETSP1061-20121228|3528_1   4 TKFVLLGGQNAGKTSIL 20 
                 56777888888888876 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00015
   TIGR03594 283 leegkalvivvNKwDlvkdekeleelkkeleekl 316
                  +++ ++viv NK+D+++d+++ ++++++ ee l
  MMETSP1061-20121228|3528_1 212 RRRHLPIVIVGNKIDIIQDRDNARQFRRQREEVL 245
                 4567799**********99999999998877655 PP

  == domain 3    score: 6.6 bits;  conditional E-value: 0.00036
   TIGR03594 138 vlaiSaehgrgikdLldeileelpeeeeeeeeeee 172
                  + +Sa+ g gi++L+d+++e   ++ ++e++++e
  MMETSP1061-20121228|3528_1 391 HMDVSAKSGAGIDNLIDQLVEIALKQMDDEDDDDE 425
                 3579****************988777555555433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1570.99
//
Query:       MMETSP1061-20121228|3524_1  [L=1303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.49
# Mc/sec: 3509.83
//
Query:       MMETSP1061-20121228|3532_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.09s 00:00:00.20 Elapsed: 00:00:00.51
# Mc/sec: 209.63
//
Query:       MMETSP1061-20121228|3529_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-24   83.5   0.0    3.3e-24   83.3   0.0    1.0  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    1.4e-15   55.5   0.1    1.7e-15   55.2   0.1    1.0  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
      5e-07   27.2   0.0    1.6e-06   25.5   0.0    1.7  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   2.4e-27   3.3e-24       3     185 .]       3     193 ..       1     193 [. 0.92

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 2.4e-27
   TIGR03634   3 TtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrr.kkkisvkalatll.snllksskflpflvqllvgGvde..eg....pklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdgv 185
                 T+  +  + gvv+Aad+      l  +kn +K+ k++++  + ++G   d+ s+++++ + ++lyel++ + k+s++a a+++ ++l  + +  pf v++l+gG+d+  +g    ++ly lD +G + + k+ a+G  + +  +++++e +e+++ e+a+k++ k i+    R + s  +  + +++kdgv
  MMETSP1061-20121228|3529_1   3 TIFAVAYEGGVVIAADQSNGRSILTYQKNLDKIAKLTEYSMMGVSGPNCDLVSFTQFIAKSINLYELSNeGTKLSTHAQANFArGELAAALRRGPFQVNVLLGGYDTgkNGepgtASLYYLDYFGTLHKVKHGAQGYAQYFCASIFDKECRENMTEEDAVKVVEKCINEMQTRFMLSQPNFIIKKVDKDGV 193
                 667788999**********************************************************872579********9846788888999************74322333468**********************************************************************9996 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.1   1.2e-18   1.7e-15       7     168 ..       3     166 ..       1     173 [. 0.87

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 1.2e-18
   TIGR03690   7 tivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehye.kieGvplslegkanrlaamvrsnlaaalq.G.lavvpllvGydl....eaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvav 168
                 ti a+ay+gGv++a d+   +  l  +++++k+ k  eys++g++G     v ++++ +  ++ ye   eG++ls +++an      r++laaal+ G + v  ll Gyd+    e ++  ++  d   g+  + ++ + G    f  + + k  +e+++eedav+v+ 
  MMETSP1061-20121228|3529_1   3 TIFAVAYEGGVVIAADQSNGRSILTYQKNLDKIAKLTEYSMMGVSGPNCDLVSFTQFIAKSINLYElSNEGTKLSTHAQAN----FARGELAAALRrGpFQVNVLLGGYDTgkngEPGTASLYYLDYF-GTLHKVKHGAQGYAQYFCASIFDKECRENMTEEDAVKVVE 166
                 9*****************************************************************4579*******9988....689******9644477888999***987333334455555655.567899******************************9975 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.2e-09   1.6e-06      34     197 ..       6     174 ..       2     203 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 1.2e-09
   TIGR03633  34 Giktkegvvlivdkri.tsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvr.PfGvalliaGvddk......earlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakale 197
                  + ++ gvv+++d+   +s l  +++++ki k+ ++ ++  +G  +D   l+ + +  a++ +l   ++   +  + + a++ +        r Pf v +l++G d++      +a l+  d  G+l + k  a G  +    ++++ke +e+++ ++a+++  k +++++ 
  MMETSP1061-20121228|3529_1   6 AVAYEGGVVIAADQSNgRSILTYQKNLDKIAKLTEYSMMGVSGPNCD---LVSFTQFIAKSINLYELSNEGTKLSTHAQANFARGELAAALRRgPFQVNVLLGGYDTGkngepgTASLYYLDYFGTLHKVKHGAQGYAQYFCASIFDKECRENMTEEDAVKVVEKCINEMQT 174
                 678899*******9872566667899**********99999999888...77777777766655433333444444444555443333332235**********9975222233579*********************************************9999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.48
# Mc/sec: 563.70
//
Query:       MMETSP1061-20121228|3530_1  [L=2480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-85  284.9   0.0      3e-85  284.3   0.0    1.2  1  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    5.3e-58  194.7   7.0    2.7e-31  106.5   3.0    3.1  3  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
    3.8e-49  164.8   2.0    2.3e-15   52.9   0.0    5.8  5  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    4.3e-48  161.9   0.0    9.9e-48  160.7   0.0    1.6  1  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    5.3e-46  155.2   0.1    3.7e-45  152.5   0.0    2.1  2  TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit
      5e-43  145.4   0.0    1.1e-42  144.3   0.0    1.5  1  TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase
    1.1e-37  127.6   0.0    5.9e-36  121.8   0.0    2.2  1  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    1.5e-22   77.9   0.0    3.1e-22   76.9   0.0    1.6  1  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    5.2e-18   62.9   0.0    3.1e-17   60.3   0.0    2.0  1  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    1.7e-13   46.1   0.0    2.5e-13   45.5   0.0    1.1  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
    1.3e-11   41.3   0.0    3.4e-05   20.1   0.0    2.5  3  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.2e-09   35.0   0.0    0.00049   16.4   0.0    2.2  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    5.1e-07   26.0   0.0     0.0025   13.8   0.0    2.3  2  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
    6.2e-07   25.9   0.0    3.9e-06   23.2   0.0    2.2  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    1.2e-06   26.2   0.1    0.00051   17.7   0.1    2.8  2  TIGR00517 acyl_carrier: acyl carrier protein
    1.5e-06   24.9   0.0    0.00066   16.2   0.0    2.3  2  TIGR02316 propion_prpE: propionate--CoA ligase
    2.5e-05   21.1   0.0    9.9e-05   19.0   0.0    1.9  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
     0.0003   18.3   0.1       0.25    8.7   0.0    2.9  2  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
      0.003   14.4   0.2        1.1    5.9   0.0    3.2  3  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
  ------ inclusion threshold ------
       0.03   11.8   0.0       0.12    9.8   0.0    2.0  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.3   0.0   1.5e-87     3e-85       1     399 [.     845    1224 ..     845    1232 .. 0.89

  Alignments for each domain:
  == domain 1    score: 284.3 bits;  conditional E-value: 1.5e-87
   TIGR01733    1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpe.yPaeRlaailedakakllltdeelaeelaevaleailleeleekaaedasaeeaaeakskpddlayviyTSGStGkPKgVlvehrslvnllaslarryelseedrvlqfsslaFDlsveeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeeaseelkslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldea.lrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKirGfRielgEieaala 399 
                  +Yre+ ++ ++    L e+ +v++++rVa+l    + +++ai++v+ a ++ v ldpe +P +R ++i+eda+++++l +ee+ +++ + +++ i ++  e  ++      e ++++ ++dd+  + yTSG+tG PKgV+v+h+++ nl+++ +r+++l+ +drvl fssl+F +s+++ +++l+aGa++v+++++ e       + ++ ++kv+ l +tps l++l+  +   + ++++v ++Gea +++ ++ ++ar++  rl+ + GpTE + ++ + e++ +       v +G+p anvr+yv+d+  + ++p++v+GEL+++G+ v++GYln+ elt+++F++dpf +++ +r+Y+TGD+++++ dG++ flGR D+q+K++GfRie gEi +a+ 
  MMETSP1061-20121228|3530_1  845 SYREFIRNISSATTFLLENIKVEHQERVAILSTCNPLAMAAIYGVVNANCTVVILDPEkTPVDRSNYIFEDAGVNIVLIEEEFVDRFCNSEQRFIKMQ--EVMSEVP--RVEVKSSNVRKDDIFGIFYTSGTTGVPKGVVVSHKNVENLINWWVRFFDLTGRDRVLLFSSLSFIMSLRQYIPTLCAGASIVCPESSLE------FESAILQGKVNKLVCTPSALAALDIDRV--APTIEMVQVAGEAPRKAIMDAWKARVS--RLFIGLGPTELCAHAICGEYDGK------IVCLGHPAANVRVYVVDPTtGLQAPINVPGELWVAGENVSNGYLNQAELTNKSFLKDPFHPKP-SRMYKTGDQAKRLVDGRVMFLGRGDSQLKVNGFRIEKGEILNAVP 1224
                  788888888888888888888***********************************9737************************99987766666554..3333333..33333334569*******************************************************************88888877654......345555666***************9983..348***********************8..9************9988887775......689****************9999************************************9975.7***************************************88875 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   3.0   1.3e-33   2.7e-31      42     327 ..    1452    1737 ..    1411    1740 .. 0.72
   2 !   33.6   0.0   1.4e-11   2.9e-09      90     215 ..    1744    1870 ..    1739    1893 .. 0.88
   3 !   53.3   0.0   1.6e-17   3.3e-15     520     694 ..    1986    2160 ..    1947    2161 .. 0.87

  Alignments for each domain:
  == domain 1    score: 106.5 bits;  conditional E-value: 1.3e-33
   TIGR02353   42 avalvfialvgrlviaiaakwllvgrlkpgeyPlwGstylRlWtvkrLveaap..tvllsGsplyelylraLGakiGkevvieslvpvvtdLltiGagvivekevdllgyrvergrlriGsvrvgddafvGtrsvldidtaiGdraqleasSalas.gqsipegerWaGsPAqkvgaakrkvqearparlrrrlavlvallvvlvllpllavllailvaivlveidallgaallgyaallvltlvalavl..ivlavlllaavrlllllvlkpgrvavhsrlgyqawtvqq 327 
                    ++++++ + ++ + i+ kw+++g++ pg+  +   ++l++W+v+r+ +++   t ++  +pl +l l  LG+k+G++   e +     dL++iG++ +ve ev+++++ ++ g l++ +v+vgd+  +G+rsv+  +++i   ++++++ ++     +  eg++  GsPA     +  + +e++ + ++     +  + +v +++ ++a  l++ v+ v ++i  l+g++  +   +lv  l  l+ +  +++ + l+a ++++l++ + p + ++  ++ +++w+  +
  MMETSP1061-20121228|3530_1 1452 FPLFLIVGCLFHILLVILCKWIMIGKYEPGKAKVFSWMFLKWWLVRRVLQVTRlyTWIFDETPLSRLVLNFLGVKVGRNCSFEQVYLLEPDLVEIGDNCVVEFEVQFATSEIKDGNLELRRVNVGDNTKLGVRSVILGGARIHANSEVAPKATVDClTSTTAEGQHLRGSPARIESPQSGTSREKNKPWRPEQNFSYACFQIVCMII-IVA--LMTEVVHVGTLIGRLIGTKYGA--IALVVYLGSLFQIisCIIWLGLVAFLKRVLIPSIEPKKIYTGQWFALRKWFLDR 1737
                  223444444556667889******************************998862256799************************99999****************************************************************9862557889*********86555554555544444444444444444444443.666..4445555555666666643333..344444444444311455566777788888899*****************9876 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 1.4e-11
   TIGR02353   90 veaaptvllsGsplyelylraLGakiGkevvies.lvpvvtdLltiGagvivekevdllgyrvergrlriGsvrvgddafvGtrsvldidtaiGdraqleasSalasgqsipegerWaGsPAqkvga 215 
                    +a+   l+ s+ ++ yl +LGak+Gk+ +i+   v +  +L+++G++  +   + +++ + ++  +   ++ +gd++  G+r v + +++i     ++a+  l sg +  eg+   GsP +  + 
  MMETSP1061-20121228|3530_1 1744 FAFASQLTLQTSSTFPWYLSLLGAKVGKKTFINHpYVRTGVELISMGDELHMGMLSYFSTDKYDARGISFDRLSIGDHVSFGQRCVAFGGARINSFVTVGAETVLSSGFTASEGSTTFGSPPVLFTS 1870
                  567788899999********************9956666689*******************************************************************************875543 PP

  == domain 3    score: 53.3 bits;  conditional E-value: 1.6e-17
   TIGR02353  520 lllaalillavavlaflilvelkwlvvgrykpqekplyspfvWlnElltklvesvavpellrllrGTpflnlvlrlLGvkiGrgvyi..dstdltErdlvtigddstlnegsvlQtHlfedrvlkvdtvtigdgatlgpsaivlygavvgedavlgpdslvMkgeevpahtrWeGnP 694 
                  +l++  ++  +++l++++  +   l  g y   +   +s  +        +v  + ++ ++ ++ GT +  ++lr++G+k+G++v+i  +     E d + igdd  l     + +H  + +vl+   v + d++ + p+a  ++ +   +++ l p ++  kg++  ++t ++GnP
  MMETSP1061-20121228|3530_1 1986 MLILLPLMYIAGSLVLMLFMKIMHLGGGSYASGTANFFSFRFFYWHIFADMVY-MCTSTIIYPFSGTELYCIWLRIMGAKVGKNVFIspENGGFREIDFMDIGDDCVLM-TPNIHAHFTDHGVLQFCPVKLEDKCEINPGATLMPLTKYHKNSRLRPFAVTVKGQHCQENTEYNGNP 2160
                  3444444455666767777788888889***********76666667777777.8*******************************944455699**********9986.5789*************************************************************** PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   2.8e-10   5.7e-08     836     927 ..     252     343 ..     239     355 .. 0.85
   2 !   32.6   0.0   1.5e-11   3.2e-09       2     379 ..     555     954 ..     554     961 .. 0.69
   3 !   13.8   0.0   7.1e-06    0.0015     420     488 ..     966    1034 ..     958    1037 .. 0.88
   4 !   30.4   0.0   6.9e-11   1.4e-08     667     716 ..    1170    1219 ..    1117    1233 .. 0.85
   5 !   52.9   0.0   1.1e-17   2.3e-15     786     916 ..    1253    1379 ..    1236    1388 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 2.8e-10
   TIGR03443 836 kesaeaeeeeltetekeirdlWlevlPnkpatiskddsffdlGGhsilatrlifelrkklvvevplgvifkkPtikafakevdrlkkaelel 927
                 k+ ++  e +  ++ ++ir ++++vl  ++++is d  ff+lGG s+ +  li +++  + v+++ +  f +P +k++a  v+++k+++ e+
  MMETSP1061-20121228|3530_1 252 KRIQDYLEVTNKTMMETIRMVYSKVLNMESDQISIDSDFFELGGSSLDTITLISQIQAIVGVHISQNEFFLNPKVKELACRVNEIKESSSEM 343
                 44455555555667789*********************************************************************998655 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 1.5e-11
   TIGR03443   2 Waerlknltlsvlptdylrpaeeklvealaslelssaekae......easstdfavllaafailvyrltgdedivlatseekd............geelvlrleiepeesfaellakvseelkeaasdeevsldelvekikaakkleeepqlfrlaf.ldaedkkeeelstssttdlavll.......ekss............aelelkivynsllfsedritivaeqlaqllsaaskdpaeaigklelltesqksllPdPtkdldWsgfrGaiqdifa.enaekhPdrtcvvetksalapssktreftykq.ideasnilahyllktGikrgdvvmvyasrgvdlvvavlGvlkaGatfsvidPayPParqtiylsvakPralivleka..Geldelvedyiedelelvteipalklq 379
                 W e+lk l+   lptd +rp++ ++      +++++  +++      + +++ +a l+a ++ ++ r+ g +d +++++ ++             ++e+ +r + ++ +sf+++l+ + +++ e +++++v++++++e+++ ++++ ++ ++  + + +++e ++ ++l +++  d+   l       +  +              le +++  + lf++d    ++e  +ql+++ ++ p+++i + ++ te +++++    +           +++f  +n  ++    c ++  ++    + +++ +y++ i + s   +  l +  +++++ v++ ++     + a+ Gv+ a +t  ++dP   P  ++ y+       ++ +e+    ++ ++ + +i+   e+++e+p ++++
  MMETSP1061-20121228|3530_1 555 WREKLKLLPALDLPTDKPRPKTLSSRGMCIPIQINEVLTERfaafvaSRGANLYAGLIALYVLMLNRMGGGDDFAIGIALANRhheglreligyfANEVAIRATFDAIMSFNDVLKMIRQNVLEGMANADVPFHKVTEALRISRDNSRTSVFQAMFAlQEREWHSLDDL-SNEEGDIRFRLkrfnhntS--KfevhlqlrhdgnGGLEGDLHIATDLFTKDSGIRMVEMYKQLMHSCLDSPTNPIRSHDIATEADNAAIRASNN----------THELFPpTNMLNFC---CKLDDVAI---VAGHQKQSYREfIRNISSATTFLLENIKVEHQERVAILSTCNPLAMAAIYGVVNANCTVVILDPEKTPVDRSNYIFEDAGVNIVLIEEEfvDRFCNSEQRFIKM-QEVMSEVPRVEVK 954
                 *********************88887777788877766655677887899999********************8887653332111222222222456779****************************************8877777765554444034444455777.7788899888855655440..1555555555544666777888889999999888999999999999999999**9999999999998865433..........35555413444443...33333333...33333344444244455555556666778888888888888888888888999999998888988766554444433333333334332225566666666654.3677777777665 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 7.1e-06
   TIGR03443  420 lsftsGseGiPkGvkGrhfslayyfpWmakrfglsekdkftmlsGiahdPiqrdiftPlflGaqllvPt 488 
                  + +tsG++G+PkGv   h  +    +W  + f+l+ +d+  ++s ++     r     l  Ga+++ P 
  MMETSP1061-20121228|3530_1  966 IFYTSGTTGVPKGVVVSHKNVENLINWWVRFFDLTGRDRVLLFSSLSFIMSLRQYIPTLCAGASIVCPE 1034
                  669*****************************************9998888888888888888888775 PP

  == domain 4    score: 30.4 bits;  conditional E-value: 6.9e-11
   TIGR03443  667 awrefwlgprdrlyrtGdlGrylPdGnvecsGraddqvkirGfrielGei 716 
                    ++ +     r+y+tGd  + l dG+v   Gr d q+k+ Gfrie Gei
  MMETSP1061-20121228|3530_1 1170 FLKDPFHPKPSRMYKTGDQAKRLVDGRVMFLGRGDSQLKVNGFRIEKGEI 1219
                  35666777778**************************************9 PP

  == domain 5    score: 52.9 bits;  conditional E-value: 1.1e-17
   TIGR03443  786 ikeylkkklasyavPtvivplkklPlnPnGkvdkPalpfPdtaqlaavakkesaeaeeeeltetekeirdlWlevlPnkpatiskddsffdlGGhsilatrlifelrkklvvevplgvifkkPtikafake 916 
                  + +++++k+++y +Pt +  ++++Pln n k+d P++     ++++   + +  e +  ++++ ek +r +W++ l  +p +i++dd+ff+lGG s+ a  +  ++ k+l+ ev++  +f++ ti++++  
  MMETSP1061-20121228|3530_1 1253 LLSHMHEKIPAYMIPTKVHKIERFPLNKNRKLDIPQML----SMIKSSKDIDIGENHLGSASREEKILRLIWAQSLGLSPCRIKNDDNFFELGGTSLSAVVVSRTISKELETEVSVHDVFEYQTIESLSDY 1379
                  457999***************************99863....4444444445566677788899999***********************************************************99765 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.7   0.0   4.8e-50   9.9e-48      20     501 ..     838    1292 ..     830    1295 .. 0.86

  Alignments for each domain:
  == domain 1    score: 160.7 bits;  conditional E-value: 4.8e-50
   TIGR01734   20 eeegqeltykeLkeesdklaaalqerl.leekePiivfGkqefemlvaflgsiksGhayiPvD.tsipleriekikeaaepelvievaelsielvetevitlealeeieeekaeavelekavkeddnyyiiytsGstGkPkGvqishdnLvsftnWiledfklseekqllnqapysfDLsvmdlyPsLasGGtLvaldkeitnnfkeLfeelkklglnvWvstPsfvdlclldpsfneeklpklteflfcGevLtkktakkLlerfPkakiyntyGPteatvavtsvkitkeildeyerlPiGfakpdvnlfivdee.GeklsegekGeivivGdsvskGylnnpekteeaf....feaegkrayrtGDagtieddgllfyqGrlDfqiklnGyrieLedieanlkkskyikeavvvPkynkdekveaLiaavvakeedfekelkltkaikkeLkkilmeymiPrkfiykdklpltanGkiDrkalaee 501 
                      q+ +y+e++++ ++++++l e++ +e++e + +    ++  ++a+ g + + ++ + +D  ++p++r + i e a  ++v+  +e+   + + e ++  +++e+++e   +  +++ v++dd + i ytsG+tG PkGv +sh+n+ +  nW ++ f l+ + ++l  +  sf +s+ ++ P+L +G  +v+ +++      e+  ++ + ++n  v tPs   l+ ld    +   p+++   + Ge   k + ++   r   ++++   GPte      + +i  e   + + + +G   ++v++++vd   G + +    Ge+ ++G+ vs+Gyln+ e t++ f    f+ +  r y+tGD+++   dg +++ Gr D q+k+nG+rie  +i + +    ++++a v+ +          + ++v    d++      +a+   +++ +++ymiP+k+   +++pl++n k+D+ ++ + 
  MMETSP1061-20121228|3530_1  838 VAGHQKQSYREFIRNISSATTFLLENIkVEHQERVAILSTCNPLAMAAIYGVVNANCTVVILDpEKTPVDRSNYIFEDAGVNIVLIEEEFVDRFCNSE-QRFIKMQEVMSEVPRVEVKSSNVRKDDIFGIFYTSGTTGVPKGVVVSHKNVENLINWWVRFFDLTGRDRVLLFSSLSFIMSLRQYIPTLCAGASIVCPESSL-----EFESAILQGKVNKLVCTPSA--LAALDI---DRVAPTIEMVQVAGEAPRKAIMDAWKARV--SRLFIGLGPTELC----AHAICGEY--DGKIVCLGHPAANVRVYVVDPTtGLQAPINVPGELWVAGENVSNGYLNQAELTNKSFlkdpFHPKPSRMYKTGDQAKRLVDGRVMFLGRGDSQLKVNGFRIEKGEILNAVP--TEVEHAHVMLHN--------GVLTIVISPLDIDV-----QALLSHMHEKIPAYMIPTKVHKIERFPLNKNRKLDIPQMLSM 1292
                  5567999************99999988689999******************************4479****************998888876666655.444467788888887888999*************************************************************************99987765.....44567788889999*****5..566664...5678***********99888888888886..578999*****64....44555554..4567899*************877**********************************44444568899*********99999************************98885..579999987665........23344444545544.....5566899****************************9887765 PP

>> TIGR03131  malonate_mdcH: malonate decarboxylase, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1      0.51     1e+02      74      96 ..      85     107 ..      60     113 .. 0.85
   2 !  152.5   0.0   1.8e-47   3.7e-45       2     280 ..    2172    2470 ..    2171    2480 .] 0.89

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.51
   TIGR03131  74 lekpsavAGySvGelaAavvaga 96 
                 ++++ a+ G+S G++ A+ va  
  MMETSP1061-20121228|3530_1  85 VPQRYALLGHSYGAIVAFEVARR 107
                 5778899************9976 PP

  == domain 2    score: 152.5 bits;  conditional E-value: 1.8e-47
   TIGR03131    2 lllfpGQGsqragmlaelpdepkaaavleeasevlgadvlel....ddaealastrsaQllilaagvaaaraLkaele....kpsavAGySvGelaAavvagalefedaLkLvalRaelMeqavpeeygllavlGleeeevealvakagvyiAiinae........dqvViaGsraalsavaeaara...aGasrakrlaVsvpSHtkllakaaeelaealaeiplaa.pklpvlsaiearkvrdaaallddLaqqiakpvdWhav.veaiaergarlvielgPGsaLtklanelfpelp 280 
                  ++lfpG G q +gml++  ++++a+++l+ as++l  d++++     d++al++tr+ Q+++++a ++a++ +k +++    k ++ AG+S+Gel+A + ag+++f+daL+Lv+  a +M   +++++ +  v+G++++e++ l+ak g+ iA+++ +        + +V+aG++++++a+++ +++     +  akrl V+   H+ l++ka ++++ al+++ ++  + + v s++ ++++ +a+++++ L  qi  pv+W+ + ++++ e  ++ +ie gP + L+++++ + pe p
  MMETSP1061-20121228|3530_1 2172 AILFPGLGTQYPGMLEKYLENNDASDLLQRASRLLSMDIRAIcapgCDPKALQDTRISQIVVFVANMMATEVMKRKVPldfdKIRVCAGFSLGELSALCFAGVMSFDDALRLVKIHADAMATCSSNGA-MCNVRGMSRKELNLLAAKYGCQIANVICDkpegdhkqNVYVLAGTVPQIEALINFVNKdveDCVVSAKRLRVTGGFHSVLMKKAQTKIRTALKTMDISLpQDYLVYSNVTGMPYTSAEEIRKLLPCQIVSPVEWYGTiLDMMNEESVTKTIECGPMHTLSTIVTLIAPEFP 2470
                  89***************************************98888899*********************9999886522226799**********************************99998885.**************************96422222222569********999886554311145569*******************************983469999*****************************76268999*******************999999875 PP

>> TIGR00128  fabD: malonyl CoA-acyl carrier protein transacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3   0.0   5.4e-45   1.1e-42       2     284 ..    2170    2463 ..    2169    2468 .. 0.86

  Alignments for each domain:
  == domain 1    score: 144.3 bits;  conditional E-value: 5.4e-45
   TIGR00128    2 kialvFPGqGsqavGmgkdlleeypiakelfdqAdeiLgydlkklvqeg.daeelnktaytqPalyvvsvilyellkekg...glkPdfvaGHsLGEysAlvaagaldFedalklvkkRgelmqeavpegegamaavlgldeeqlakvleeake..evvslanfnsp.eq.v.visGtkkevekaeallk...eagakralpLevsgafHselmkpaaeklkelleaiqfnka.tvpvisnvdaeaetekdklkekLveqltspvrwtesvekl.aekGvtefaEvGpGkvLtGLik 284 
                  k a++FPG G q  Gm+++ le+   a +l ++A+  L +d+++++  g d + l+ t  +q  ++v+++++ e++k+k+     k  + aG sLGE sAl+ ag+++F+dal+lvk  ++ m++ +   +gam  v g++ ++l+ +  ++      v +    +  +q v v++Gt+ ++e++ + ++   e  +  a  L+v g fHs lmk+a+ k++  l+ ++++ + +  v snv+  ++t  +++++ L  q+ spv w  ++  + +e+ vt+ +E Gp + L+ ++ 
  MMETSP1061-20121228|3530_1 2170 KAAILFPGLGTQYPGMLEKYLENN-DASDLLQRASRLLSMDIRAICAPGcDPKALQDTRISQIVVFVANMMATEVMKRKVpldFDKIRVCAGFSLGELSALCFAGVMSFDDALRLVKIHADAMATCS--SNGAMCNVRGMSRKELNLLAAKYGCqiANVICDKPEGDhKQnVyVLAGTVPQIEALINFVNkdvEDCVVSAKRLRVTGGFHSVLMKKAQTKIRTALKTMDISLPqDYLVYSNVTGMPYTSAEEIRKLLPCQIVSPVEWYGTILDMmNEESVTKTIECGPMHTLSTIVT 2463
                  6899*****************999.899******************98747799*************************96533467799*********************************9998..99**************99988887722223332222212233349**********999887343344667788****************************965268899******************************99765157899********999987765 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   2.9e-38   5.9e-36      16     511 ..     834    1286 ..     825    1292 .. 0.79

  Alignments for each domain:
  == domain 1    score: 121.8 bits;  conditional E-value: 2.9e-38
   TIGR03098   16 atalklkdrtltyaaLseevkalas.glkalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLka.eqvayilkDcnvkllvtskerldaledalakchdlrtlilvdepekasekkagaevlsweklkaleeaa..akvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredDrllavLPlsfDyGlnqlttaflvGatvvlldyllpkDvlkavekekitglaavPPlWlqLakldwpeeaaeslRyltnsGGalpkavlarlRkllpeaklylmYGLteafRstyLdPeevdrrPdsiGkaipnaevlvlre.dGsecapeeeGelvhrGalvakGYWndpektaerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemiktsGyRvsPteveevllatglvaeavvlgvpdpelGqaivlvvvesdkeeldkkellkelraelPaymvPakielrealprnanGkiDr 511 
                   +a++  +++ +y +  +++ +  + +l+ + +++ eRvai    +  +++a+++++ a    v ++P     +  +yi +D+ v++++ ++e +d   + +++                         ++++++++  ++   ++++v +dd+  i+YtsG tG Pkgvv+sh+n+ +  +   ++ +l+  Dr+l    lsf + l q   ++ +Ga++v  +  l     +a+ + k+  l   P     La ld+   +a ++ ++  +G a  ka++ + ++++  ++l++  G te    +     e d +   +G+  +n+ v v+ +  G ++  + +Gel  +G  v++GY n++e t + f + p +++ +++       GD+ +r  +G ++f+gR d+ +k  G+R+   e+ +++   + v+ a v+      l + +  +v ++   ++d ++ll+++++++Paym+P+k++  e +p n n k+D 
  MMETSP1061-20121228|3530_1  834 DVAIVAGHQKQSYREFIRNISSATTfLLENIKVEHQERVAILSTCNPLAMAAIYGVVNANCTVVILDPEKTPvDRSNYIFEDAGVNIVLIEEEFVDRFCNSEQR------------------------FIKMQEVMSEVPRVevKSSNVRKDDIFGIFYTSGTTGVPKGVVVSHKNVENLINWWVRFFDLTGRDRVLLFSSLSFIMSLRQYIPTLCAGASIVCPESSLE--FESAILQGKVNKLVCTPS---ALAALDID-RVAPTIEMVQVAGEAPRKAIMDAWKARV--SRLFIGLGPTELCAHA--ICGEYDGKIVCLGHPAANVRVYVVDPtTGLQAPINVPGELWVAGENVSNGYLNQAELTNKSFLKDPFHPKPSRMY----KTGDQAKRLVDGRVMFLGRGDSQLKVNGFRIEKGEILNAVP--TEVEHAHVM------LHNGVLTIVISP--LDIDVQALLSHMHEKIPAYMIPTKVHKIERFPLNKNRKLDI 1286
                  56666777777777666666554441456677777777777777777777777777777777777777543214566777777777777776666655544444........................333333333333322255678899**********************************************************************9997764..5689************96...68999998.8899999998888877777788877776..6899999999976554..56899*******************972577888899****************************99976655554....47*****************************9999877654..456665544......556677777755..568889*********************************95 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   1.5e-24   3.1e-22      15     438 ..     860    1285 ..     845    1289 .. 0.84

  Alignments for each domain:
  == domain 1    score: 76.9 bits;  conditional E-value: 1.5e-24
   TIGR01923   15 alkaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttql.kelkvellltdslleeke...dlqaisldeleaeaeaeevslsasfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWLlsLPlyHvsGlsilfrallegatlkivdkfaaeqllesianekvthiSlVptqLkrlleesssepeslrkiLLGGsaipaplieeaqekgl.piyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd.......keghgeilvkganlmkgYlekgelteaveeqG.w.......lktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeDsefGqvPvayikses.eiskakltaylkeklaKyKvPiafekldelpkeasgKil 438 
                   l+   v ++++va+l+  +   + +++ +++++ ++++l ++ t+ ++ +++ ++  v+++l ++ + ++    +   i+++e++ e  + ev+ s++++ d+i  + +TSg+tG pK+vv +++n  +      + + +t  d+ Ll   l  +  l   + +l  ga+++ ++     ++   i + kv+ +   p  L+ l  ++     ++  +   G+a p + i  a + ++  ++ + G TE ++  +  e + +       G+p a+v + + vd         +  ge++v+g+n+ +gYl++ elt+ ++ +  +       +ktgD ++   +g+++ l+R d  +   G  i   ei +++   +ev++a v+ ++        v+ i+    +i+ + l  +++ek+  y +P++ +k+++ p +++ K++
  MMETSP1061-20121228|3530_1  860 LLENIKVEHQERVAILSTCNPLAMAAIYGVVNANCTVVILDPEKTPVDRSNYIfEDAGVNIVLIEEEFVDRFcnsEQRFIKMQEVMSEVPRVEVK-SSNVRKDDIFGIFYTSGTTGVPKGVVVSHKNVENLINWWVRFFDLTGRDRVLLFSSLSFIMSLRQYIPTLCAGASIVCPESSL--EFESAILQGKVNKLVCTPSALAALDIDRVA--PTIEMVQVAGEA-PRKAIMDAWKARVsRLFIGLGPTELCAHAICGEYDGKI---VCLGHPAANVRVYV-VDPttglqapINVPGELWVAGENVSNGYLNQAELTNKSFLKDpFhpkpsrmYKTGDQAKRLVDGRVMFLGRGDSQLKVNGFRIEKGEILNAVP--TEVEHAHVMLHNG-------VLTIVISPlDIDVQALLSHMHEKIPAYMIPTKVHKIERFPLNKNRKLD 1285
                  46667799**********999999******************999888877653999*******9999876545467889999999999878888.99**************************************************************************9999965..9*********************98666655..379999999987.5555666665555279************9999888766...689**********9.55437776655567*****************9998876543312222222279********************99999999999999877665..5799999998863.......455554444999999***********************9999977876 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.5e-19   3.1e-17      20     462 ..     833    1274 ..     815    1310 .. 0.74

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1.5e-19
   TIGR02262   20 dklafiddvsslsygeleaevrrvaaa.lrrlGvkreervllvlldtvdfpivflGairaGivpvalntllt.addyaylledsrarvvlvseellpvlkevlaklpdleklvvvgakpagekqlaellateseqekaaatkaddpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlglreddvvfsaaklffayGlGnalifplsvGatavlmaerptpdavfdr.lrrvkptifygvptlyaamladpelkaedekrlrlctsaGealpeevGkrwkarfGvdildGvGstell.hiflsnlpddvkyGtsGkpvpGyrlrlvd.dggedvadgevGellvsgpssaagywnnreksratfeGe........wtrsGdkyvrnddGsytyaGrtddllkvsGiyv........spfevesa.liaheavleaavvgae.dedgli.....kpkafvvlrsgadid 462 
                  d +a +   ++ sy e+ ++++ +++  l ++ v+++erv+++         + +G ++a    v l+   t  d  +y++ed+  ++vl+ ee+   + +        e++ +  ++      ++e+      + k++  + dd+    y+sG+tG+pkGvv  h n++   + + r  ++l   d v+  + l f   l    i  l+ Ga+ v  +e   ++  f+  + + k + + + p+  aa+  d   ++     + ++  aGea  + +   wkar    +  G+G tel  h    +  +++   + G+p    r+ +vd  +g +   +++Gel v g   ++gy n+ e ++++f  +          ++Gd+  r  dG+ ++ Gr d  lkv G  +         p eve a ++ h++vl   + + + d + l+     k  a++++ + ++i+
  MMETSP1061-20121228|3530_1  833 DDVAIVAGHQKQSYREFIRNISSATTFlLENIKVEHQERVAILSTCNPLAMAAIYGVVNANCTVVILDPEKTpVDRSNYIFEDAGVNIVLIEEEFVDRFCN-------SEQRFIKMQEV-----MSEVP---RVEVKSSNVRKDDIFGIFYTSGTTGVPKGVVVSHKNVENLINWWVR-FFDLTGRDRVLLFSSLSFIMSLRQY-IPTLCAGASIV-CPE---SSLEFESaILQGKVNKLVCTPSALAALDIDRVAPT-----IEMVQVAGEAPRKAIMDAWKARVSR-LFIGLGPTELCaHAICGEYDGKI--VCLGHPAANVRVYVVDpTTGLQAPINVPGELWVAGENVSNGYLNQAELTNKSFLKDpfhpkpsrMYKTGDQAKRLVDGRVMFLGRGDSQLKVNGFRIekgeilnaVPTEVEHAhVMLHNGVLTIVISPLDiDVQALLshmheKIPAYMIPTKVHKIE 1274
                  5677888889999999988887777651569**********98776666667899******99999998887357889*************9998765544.......44444444421.....22221...22345677899**999************************999765.6788888888888899999999764.45577777665.444...45556541555677888899999999877766654.....667889****************986.666******96377777777766..57899**********96677778889*********************99999864322222222679***************************765222222225899998735679999987776654344444422222444666666666655 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   1.2e-15   2.5e-13     676     876 ..    2256    2462 ..    2213    2468 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 1.2e-15
   TIGR02813  676 dlvaGhsfGelsalcaaGvisdddylklaferGqamaassaeadaGvmyavilkvkksaeviknc.ikdiegvsianynsptqlviaGasaaiqlaa....kalkekGfkaiplpvsgafhtplvahaqkpfsaaidkakfnkpk.vplysngtgklhkndakaikkalkdhilesvhf.seeleaiyaaGarvfvefGpknilqklv 876 
                   + aG s+Gelsalc aGv+s dd l+l     +ama+ s+++++    ++  k  +      +c i+++   +      ++  v+aG+  +i+  +    k++++    a  l v+g fh+ l+ +aq     a+     + p+   +ysn tg  +   a++i+k l   i+  v++  + l+ + ++     +e Gp   l  +v
  MMETSP1061-20121228|3530_1 2256 RVCAGFSLGELSALCFAGVMSFDDALRLVKIHADAMATCSSNGAMCNVRGMSRKELNLLAAKYGCqIANVICDKPEGDHKQNVYVLAGTVPQIEALInfvnKDVEDCVVSAKRLRVTGGFHSVLMKKAQTKIRTALKTMDISLPQdYLVYSNVTGMPY-TSAEEIRKLLPCQIVSPVEWyGTILDMMNEESVTKTIECGPMHTLSTIV 2462
                  578*************************************9998877777666655555555544233333333333455677899**9998876651112666777788889*******************************74679******876.579***************861677899999999999*****99998776 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.1   4.4e+02      88     133 ..     842     888 ..     838     897 .. 0.78
   2 !   20.1   0.0   1.6e-07   3.4e-05     195     261 ..     918     983 ..     900    1061 .. 0.76
   3 !   18.4   0.0   5.3e-07   0.00011     471     526 ..    1173    1231 ..    1107    1319 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.1
   TIGR02188  88 rkltYaellrevcrlanvlke.lGvkkgdrvaiYlpmipeaviamla 133
                 +k +Y+e+ r+++ + + l e + v++ +rvai     p a++a+ +
  MMETSP1061-20121228|3530_1 842 QKQSYREFIRNISSATTFLLEnIKVEHQERVAILSTCNPLAMAAIYG 888
                 6789*******999887665449**********88777777666655 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.6e-07
   TIGR02188 195 vekvlvvkrtgeevaewkegrDvwweelvekeasaecepekldsedplfiLYtsGstGkPkGvlhtt 261
                 v+ vl+ +   +     +e+r ++++e++++  + e++  ++  +d+  i YtsG+tG PkGv+ + 
  MMETSP1061-20121228|3530_1 918 VNIVLIEEEFVDRFC-NSEQRFIKMQEVMSEVPRVEVKSSNVRKDDIFGIFYTSGTTGVPKGVVVSH 983
                 555666555555533.67899999******99999***************************98654 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 5.3e-07
   TIGR02188  471 etYfkklkglyftGDgarrdkdGyiwilGRvDdvinvsGhrlgtaeiesal...vshea 526 
                  + +  k +++y tGD+a+r  dG ++ lGR D  ++v G r+   ei +a+   v+h +
  MMETSP1061-20121228|3530_1 1173 DPFHPKPSRMYKTGDQAKRLVDGRVMFLGRGDSQLKVNGFRIEKGEILNAVpteVEHAH 1231
                  334445556*************************************9999744444444 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.4e-06   0.00049     169     221 ..     937     990 ..     931    1015 .. 0.75
   2 !   16.1   0.0   3.1e-06   0.00064     340     454 ..    1095    1214 ..    1061    1292 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.4e-06
   TIGR03205 169 rivtyadfvkgaak.paewpavkaddvallqytggttglpkgamlthgnltsav 221
                 r +++++ + +  +  ++  +v+ dd+  + yt gttg+pkg +++h n+   +
  MMETSP1061-20121228|3530_1 937 RFIKMQEVMSEVPRvEVKSSNVRKDDIFGIFYTSGTTGVPKGVVVSHKNVENLI 990
                 56666666555443146778999*************************987654 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 3.1e-06
   TIGR03205  340 lksgwgmtetcspgtghplegpdkpgsiglmlpgieldvvslddpkkvlppgev.gelrirgpnvtrgywnraeesaeafvgdrf........ltgdigyvdrdgyfflvdrkkdmiisggfnv 454 
                  l  g g te c+    h   g      + l  p  ++ v  +d ++    p +v gel + g nv++gy n+ae + ++f++d f         tgd      dg  +++ r    +   gf +
  MMETSP1061-20121228|3530_1 1095 LFIGLGPTELCA----HAICGEYDGKIVCLGHPAANVRVYVVDPTTGLQAPINVpGELWVAGENVSNGYLNQAELTNKSFLKDPFhpkpsrmyKTGDQAKRLVDGRVMFLGRGDSQLKVNGFRI 1214
                  556777777775....56666666667788899999*9999999999999988879*************************9977222222224666666666666666666666666666655 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.2e-05    0.0025     269     339 ..     966    1036 ..     939    1048 .. 0.82
   2 !    9.5   0.0   0.00024      0.05     496     546 ..    1178    1226 ..    1164    1240 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.2e-05
   TIGR01217  269 ilfssGttGvpkaivhsaGGtlvqhlkeh.vlhcdltdgdrllyyttvGwmm.wnflvsglatGatlvlydGs 339 
                  i+++sGttGvpk +v s     v+ l +  v   dlt  dr+l +++  ++m     + +l +Ga++v  + s
  MMETSP1061-20121228|3530_1  966 IFYTSGTTGVPKGVVVSHKN--VENLINWwVRFFDLTGRDRVLLFSSLSFIMsLRQYIPTLCAGASIVCPESS 1036
                  89*************99865..566665415568***************98835678899******9976655 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00024
   TIGR01217  496 kypgvwahGdyieltprGgivihGrsdatlnpnGvrlGsaeiynaverlde 546 
                  k   +++ Gd ++    G ++++Gr d+ l  nG r+   ei nav    e
  MMETSP1061-20121228|3530_1 1178 KPSRMYKTGDQAKRLVDGRVMFLGRGDSQLKVNGFRIEKGEILNAVPT--E 1226
                  556678999****99*****************************9964..4 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0       0.4        82      37      64 ..     832     859 ..     821     882 .. 0.70
   2 !   23.2   0.0   1.9e-08   3.9e-06     164     521 ..     943    1285 ..     883    1289 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.4
   TIGR02275  37 pdaiaiicgerkfsyrelderadnlaas 64 
                  d +ai++g++k syre+ +++++ ++ 
  MMETSP1061-20121228|3530_1 832 LDDVAIVAGHQKQSYREFIRNISSATTF 859
                 4889*************99888764433 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1.9e-08
   TIGR02275  164 ksaleslaeevkleetkadevaffqlsGGstGtpkliPrthddyaysvrrsveiceltqqtrylcalPaahnyplssPGalGvfyaGGcvvlaadpspteafpliekhkvtvtalvPpa.valwldaaeksradlsslkllqvGGaklsealarrvpkvlgcklqqvfGmaeGlvnytrlddsdeiivttqGkPispddevrvvdeegepvae.GeaGrlltrGPytirGyykaeehnakafdaeGf.......yitGdlvkltkeGyivveGrakdqinrGGekiaaeeienlllkhpavidaalvsledellGekscafivvkdedlkavqlrrflreaGlaeyklPdrvelidslPltavGkid 521 
                  + + e +  evk ++++ d++  +  + G+tG+pk +  +h++ +  ++  v    lt + r l  l  +  + +s    +  + aG ++v  +++   e  + i + kv+     P+a +al +d +        +++++qv G    +a+    ++ ++ +l   +G +e l +++   + d +iv   G+P  ++ +v+vvd     +a+    G l + G     Gy  + e  +k+f ++ f       y tGd +k+  +G ++  Gr   q+   G +i   ei n +    +v + a v l++ +        iv+ + d+    l  +++e+ + +y +P +v+ i+ +Pl    k+d
  MMETSP1061-20121228|3530_1  943 EVMSEVPRVEVKSSNVRKDDIFGIFYTSGTTGVPKGVVVSHKNVENLINWWVRFFDLTGRDRVL--LFSSLSFIMSLRQYIPTLCAGASIVCPESS--LEFESAILQGKVNKLVCTPSAlAALDIDRVA------PTIEMVQVAGEAPRKAIMDAWKARVS-RLFIGLGPTE-LCAHAICGEYDGKIV-CLGHPA-ANVRVYVVDPTTGLQAPiNVPGELWVAGENVSNGYLNQAELTNKSFLKDPFhpkpsrmYKTGDQAKRLVDGRVMFLGRGDSQLKVNGFRIEKGEILNAVP--TEVEH-AHVMLHNGV------LTIVISPLDIDVQALLSHMHEK-IPAYMIPTKVHKIERFPLNKNRKLD 1285
                  22333445567777888899988888999*************************9999999987..6788899**************999976543..3444678899999888888761445555443......57899****98777777666666654.5555556555.777777888888887.579*96.567899999877766661568*************************9998766666669************************************99874..34555.556566555......5689999999999999999986.999**************98877776 PP

>> TIGR00517  acyl_carrier: acyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.1   2.5e-06   0.00051       2      59 ..     263     319 ..     262     329 .. 0.92
   2 ?    5.1   0.0     0.022       4.4       6      73 ..    1313    1380 ..    1309    1383 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.5e-06
   TIGR00517   2 qeiiekvkkiikeqlnvdedkvttdasfveDLgaDSLDtvELvmalEeeFdieipdee 59 
                 ++++e ++ + ++ ln++ d+++ d+ f+e Lg  SLDt+ L+ ++    ++ i+++e
  MMETSP1061-20121228|3530_1 263 KTMMETIRMVYSKVLNMESDQISIDSDFFE-LGGSSLDTITLISQIQAIVGVHISQNE 319
                 57899************************8.**************9999999988775 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.022
   TIGR00517    6 ekvkk.iikeqlnvdedkvttdasfveDLgaDSLDtvELvmalEeeFdieipdeeAekiatVgdavdyi 73  
                  ek+ + i +++l++ + ++++d +f+e Lg  SL  v +   + +e ++e++  +  + +t+++  dyi
  MMETSP1061-20121228|3530_1 1313 EKILRlIWAQSLGLSPCRIKNDDNFFE-LGGTSLSAVVVSRTISKELETEVSVHDVFEYQTIESLSDYI 1380
                  55544155789***************8.***********************************999999 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0034       0.7     223     251 ..     952     980 ..     918    1063 .. 0.75
   2 !   16.2   0.0   3.2e-06   0.00066     408     521 ..    1116    1230 ..    1078    1243 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0034
   TIGR02316 223 dvevewlesnepsyilytsgttgkpkgvq 251
                 +v+   +  ++   i+ytsgttg pkgv 
  MMETSP1061-20121228|3530_1 952 EVKSSNVRKDDIFGIFYTSGTTGVPKGVV 980
                 444455556666789************95 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 3.2e-06
   TIGR02316  408 klgspglpvygyrldvldeatgedvgpnekgllvvaa.plppgclstvwgddarflktyfsafkrllyssldwgirdedgytfilgrtddvinvaghrlgtreieesvsshaava 521 
                  k+   g p    r+ v+d +tg ++  n  g l va+  +  g l+     +  flk  f   +  +y + d + r  dg ++ lgr d  ++v g r+   ei ++v +    a
  MMETSP1061-20121228|3530_1 1116 KIVCLGHPAANVRVYVVDPTTGLQAPINVPGELWVAGeNVSNGYLNQAELTNKSFLKDPFHPKPSRMYKTGDQAKRLVDGRVMFLGRGDSQLKVNGFRIEKGEILNAVPTEVEHA 1230
                  444556777788999****************99998736899*************************************************************999887655444 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       4.3   8.9e+02     146     173 ..     403     430 ..     396     437 .. 0.79
   2 !   19.0   0.0   4.8e-07   9.9e-05     187     248 ..     953    1014 ..     919    1207 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 4.3
   TIGR03208 146 elqsklpalrqvvvvdgdgdddfdallv 173
                 ++ ++ p+lr++v +d   +d  +++l 
  MMETSP1061-20121228|3530_1 403 HVVKQQPSLRTIVAIDPRTNDIKQKVLP 430
                 456788**********999998888875 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 4.8e-07
   TIGR03208  187 lrgdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgegdvilmaspmahq 248 
                  ++ +++  dd+  ++ytsgttg pkgv+ +   +   i  +++ ++l + d +l  s ++  
  MMETSP1061-20121228|3530_1  953 VKSSNVRKDDIFGIFYTSGTTGVPKGVVVSHKNVENLINWWVRFFDLTGRDRVLLFSSLSFI 1014
                  56778889********************998887766777788899*****99998887765 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0012      0.25     143     202 .]    1562    1624 ..    1523    1624 .. 0.70
   2 !    6.2   0.0    0.0071       1.4     137     175 ..    1817    1855 ..    1799    1862 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0012
   TIGR03570  143 hiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaGavV...vkdipenavvvGvPak 202 
                  +i  g     +v++g+++ +G+ ++++ g +I +++ v   a+V   ++ + e++ + G+Pa+
  MMETSP1061-20121228|3530_1 1562 EIKDGNLELRRVNVGDNTKLGVRSVILGGARIHANSEVAPKATVdclTSTTAEGQHLRGSPAR 1624
                  3344444445799***********************999999986667888888888888886 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0071
   TIGR03570  137 eigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIg 175 
                   igd+v++  +++  Gg++i++ v +Ga++++  g t  
  MMETSP1061-20121228|3530_1 1817 SIGDHVSFGQRCVAFGGARINSFVTVGAETVLSSGFTAS 1855
                  578888888888888888888888888888777776655 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.1     0.015       3.2     121     155 ..    1571    1605 ..    1526    1612 .. 0.72
   2 !    5.9   0.0    0.0056       1.1     118     153 ..    1817    1852 ..    1810    1870 .. 0.76
   3 ?   -2.1   0.0       1.5     3e+02     159     171 ..    2112    2124 ..    2062    2155 .. 0.50

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.015
   TIGR01853  121 anveiGenvkIgpgvvigddvkigdesviyanvvi 155 
                  ++v++G+n+k+g  +vi  + +i ++s++++++++
  MMETSP1061-20121228|3530_1 1571 RRVNVGDNTKLGVRSVILGGARIHANSEVAPKATV 1605
                  56777777777777777777777777777777765 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0056
   TIGR01853  118 viganveiGenvkIgpgvvigddvkigdesviyanv 153 
                  +ig++v+ G++++ + g+ i++ v++g+e+v+ ++ 
  MMETSP1061-20121228|3530_1 1817 SIGDHVSFGQRCVAFGGARINSFVTVGAETVLSSGF 1852
                  678888888888888888888888888888877654 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.5
   TIGR01853  159 vklgknviiqaga 171 
                  vkl+++++i++ga
  MMETSP1061-20121228|3530_1 2112 VKLEDKCEINPGA 2124
                  2333333333333 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00061      0.12      27      89 ..      39     111 ..      15     130 .. 0.75
   2 ?   -3.4   0.0       6.5   1.3e+03      77     109 ..     506     538 ..     496     553 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00061
   TIGR01738  27 LsahftlslvDLPG.yGdsaelralslaevaeailaqa.........pakaiwlGWsLGGLvalhlalthpdk 89 
                 L+  f+ +lvDLPG + +++e    ++++vae ++++a         p++  +lG s G +va ++a +  +k
  MMETSP1061-20121228|3530_1  39 LHLSFEPHLVDLPGrFLRAEENAVTDISAVAEVVIDEAlaagkgsvvPQRYALLGHSYGAIVAFEVARRAHEK 111
                 5667899*******555677777789999998777653222223333888899**************886664 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 6.5
   TIGR01738  77 LvalhlalthpdkvrsLvlvasspkfaaredwp 109
                 L+ ++lal+  +k ++++ + s+p ++    w+
  MMETSP1061-20121228|3530_1 506 LLRVYLALRSNQKAENVLEIHSFPNYVDWTMWQ 538
                 67789*******************999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 1.81u 0.20s 00:00:02.01 Elapsed: 00:00:01.53
# Mc/sec: 2139.43
//
Query:       MMETSP1061-20121228|3535_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.7   0.0      0.013   12.5   0.0    1.0  1  TIGR00452 TIGR00452: putative methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00452  TIGR00452: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.1e-06     0.013      44      85 ..      21      64 ..      13      67 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.1e-06
   TIGR00452 44 iveflp..elkadeldlksavkadkeeplsegekkrileelkal 85
                +v++lp  e   ++l+l++  ++dk++p s+g ++++ +++k+l
  MMETSP1061-20121228|3535_1 21 AVDVLPpyEYIKQQLQLQQNQQQDKTNPSSQGAVRKLKSTMKKL 64
                67888833345688999*************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.39
# Mc/sec: 240.29
//
Query:       MMETSP1061-20121228|3531_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-11   39.9   0.0    1.1e-10   39.2   0.0    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    8.9e-07   25.5   0.1    2.9e-06   23.8   0.0    1.7  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   5.5e-14   1.1e-10       4      56 ..     245     301 ..     244     335 .. 0.85

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 5.5e-14
   TIGR02349   4 eiLgvskdAseeeikkAYrklakkyHPDrnkg....ekeaeekfkeineAyevLsde 56 
                 e+Lgv+ +A++++ikkAYrkl+ + HPDr +g     ++a  +f +++ Ay+ Ls  
  MMETSP1061-20121228|3531_1 245 ETLGVETTAEKSDIKKAYRKLSFELHPDRFEGtpdeCEAATVQFGRVQLAYDTLSSG 301
                 78***************************99854433456779***********965 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2     0.051   1.1e+02     110     162 ..      61     115 ..      58     156 .. 0.60
   2 !   23.8   0.0   1.4e-09   2.9e-06       6      57 ..     245     301 ..     240     314 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.051
   TIGR03835 110 kkkkkkkgwfwakskeeektieteeiidvdasvedanetrlfddtl.....Ddqlees 162
                 k kkkk g   +k k+           dv+as+   ++  ++d+ +     D q ee+
  MMETSP1061-20121228|3531_1  61 KSKKKKGGKNKGKNKKGPAAASS-TPFDVNASIIRLEK--KYDELMlnaakDLQREEV 115
                 44555555555555554443333.56788888755443..333333333334444444 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 1.4e-09
   TIGR03835   6 evLgidrDadeqeikkafrkLakkyhPDrnka.ad...aaki.faeineandvLsnP 57 
                 e Lg++  a++++ikka+rkL+   hPDr +  +d   aa + f  +  a+d Ls  
  MMETSP1061-20121228|3531_1 245 ETLGVETTAEKSDIKKAYRKLSFELHPDRFEGtPDeceAATVqFGRVQLAYDTLSSG 301
                 89**************************98755443336655599999999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 1416.94
//
Query:       MMETSP1061-20121228|3533_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   19.5   0.2    0.00017   18.9   0.1    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
  ------ inclusion threshold ------
      0.026   10.7   0.1      0.035   10.3   0.1    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
        1.2    7.3   9.3        0.8    7.8   0.8    3.0  2  TIGR03602 streptolysinS: bacteriocin protoxin, streptolysin S family


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   1.2e-07   0.00017      12      76 ..      23      84 ..      15     111 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.2e-07
   TIGR02349 12 AseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsde.ekraqYDqfghagleggagg 76
                 +++++ k +r++a+k+HPD+         +f++ + A+ +L+++  k  ++  +g+++ e +  +
  MMETSP1061-20121228|3533_1 23 YTTQDVEKCFRQQARKHHPDKGG----DASRFRDLHSAKCILTEHiAKNGEFSSYGTRRNETNFST 84
                47899***************998....458************997467789999999988876443 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1   2.5e-05     0.035      16      89 ..      25      92 ..      17     111 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.5e-05
   TIGR03835 16 eqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnP.kkraryDkyGhDGvDreddldfdadvfdsffe 89
                 q++ k fr+ a+k+hPD+  +a   + f+++  a+ +L+    k  ++  yG     r ++ +f + v  s +e
  MMETSP1061-20121228|3533_1 25 TQDVEKCFRQQARKHHPDKGGDA---SRFRDLHSAKCILTEHiAKNGEFSSYGT----RRNETNFSTAVSASLYE 92
                699***************87664...5699999999999875256677888875....45556666666666666 PP

>> TIGR03602  streptolysinS: bacteriocin protoxin, streptolysin S family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   1.1     0.027        36      24      35 ..     150     161 ..     132     175 .. 0.78
   2 ?    7.8   0.8   0.00058       0.8      23      35 ..     442     454 ..     439     460 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.027
   TIGR03602  24 GsCCCCsttCCv 35 
                  sC  C+t+C +
  MMETSP1061-20121228|3533_1 150 DSCFLCCTACPL 161
                 699999999976 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00058
   TIGR03602  23 PGsCCCCsttCCv 35 
                 P sCCC +t C +
  MMETSP1061-20121228|3533_1 442 PSSCCCLATNCIM 454
                 8999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1781.85
//
Query:       MMETSP1061-20121228|3536_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1911.40
//
Query:       MMETSP1061-20121228|3541_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 978.92
//
Query:       MMETSP1061-20121228|3540_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 822.39
//
Query:       MMETSP1061-20121228|3543_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|3545_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 442.16
//
Query:       MMETSP1061-20121228|3546_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 643.45
//
Query:       MMETSP1061-20121228|3547_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|3549_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 347.08
//
Query:       MMETSP1061-20121228|3548_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       377  (0.0919064); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.19s 00:00:00.74 Elapsed: 00:00:00.65
# Mc/sec: 639.64
//
Query:       MMETSP1061-20121228|3550_1  [L=816]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-48  160.7   0.1    1.1e-47  160.0   0.1    1.3  1  TIGR01744 XPRTase: xanthine phosphoribosyltransferase
    4.1e-22   76.3   0.2    6.6e-22   75.6   0.2    1.2  1  TIGR01743 purR_Bsub: pur operon repressor PurR
    1.7e-13   48.9   0.0    2.8e-13   48.1   0.0    1.3  1  TIGR01090 apt: adenine phosphoribosyltransferase
    1.6e-07   29.0   0.1    0.00066   17.2   0.0    2.3  2  TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
    0.00018   19.1   0.0     0.0005   17.7   0.0    1.7  2  TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
    0.00044   17.9   0.0     0.0013   16.4   0.0    1.8  1  TIGR00336 pyrE: orotate phosphoribosyltransferase
     0.0094   12.7   0.1      0.016   12.0   0.1    1.3  1  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase


Domain annotation for each model (and alignments):
>> TIGR01744  XPRTase: xanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.0   0.1   1.8e-50   1.1e-47       4     191 .]     627     813 ..     625     813 .. 0.99

  Alignments for each domain:
  == domain 1    score: 160.0 bits;  conditional E-value: 1.8e-50
   TIGR01744   4 lkqkikeeGkvldekilkvdsflnhqldaklmrevgeefarrfadkgitkiltieasGiaPaimtalkldvPvvfakkkkpltltdqlltasvvsftkskestvivskeflsdedrvliiddflanGdaarglvdivkqagakivGlGivieksfqnGreeleelglrveslakiasleeekvtlvqe 191
                 l++++ ++Gkvl+++i+ v  f++ ++d  lm   ++e+ +rf ++ +tki+t+ ++G+  a+ +a  l+vPvv+a+k++   + d  + a   s t +k+ +++vsk+++ + drvliiddfl++G + ++l+ i+ +aga+ vG+G+++ek++++Gr +l+  ++++esl+++as+e+  + lv+e
  MMETSP1061-20121228|3550_1 627 LRDRVLKDGKVLPNNIIDVSKFMDSRVDVDLMDACAQELSQRFVQTKPTKIMTVATTGLVIALPMAKYLQVPVVYARKERNVVMAD-TYSAPYSSKTVGKNRQLLVSKTHVHKSDRVLIIDDFLSSGSSQEALLRILSDAGAEPVGIGVLLEKAYDPGRTALSGFDIPIESLCRVASVEGGVIQLVEE 813
                 7899**********************************************************************************.9***********************************************************************************************99986 PP

>> TIGR01743  purR_Bsub: pur operon repressor PurR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.2   1.1e-24   6.6e-22      85     234 ..     627     779 ..     623     791 .. 0.93

  Alignments for each domain:
  == domain 1    score: 75.6 bits;  conditional E-value: 1.1e-24
   TIGR01743  85 lceklseserilPGgflyltdllskP...silskiakilasvfaekeidavvtvetkGvPlayavakvlnvslvivrkdskvteGstvsinyvsGssdriqkmslakrslkkGskvllvddflkaGGtvkGlielleefdaelvGigvlidne 234
                 l++++ +  ++lP + + ++ ++ +     +++  a+ l++ f++ +   ++tv+t G+ +a+ +ak+l+v++v +rk+ +v    t s  y s + ++ +++ ++k  ++k  +vl++ddfl +G + + l+ +l++  ae vGigvl++++
  MMETSP1061-20121228|3550_1 627 LRDRVLKDGKVLPNNIIDVSKFMDSRvdvDLMDACAQELSQRFVQTKPTKIMTVATTGLVIALPMAKYLQVPVVYARKERNVVMADTYSAPYSSKTVGKNRQLLVSKTHVHKSDRVLIIDDFLSSGSSQEALLRILSDAGAEPVGIGVLLEKA 779
                 7888888999**********9997642226889999*****************************************************************************************************************9976 PP

>> TIGR01090  apt: adenine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.1   0.0   4.8e-16   2.8e-13      29     166 ..     656     797 ..     642     800 .. 0.87

  Alignments for each domain:
  == domain 1    score: 48.1 bits;  conditional E-value: 4.8e-16
   TIGR01090  29 elfrllidqlverlkeakidlvvgleaRGFifgaalalklgvgfvpvRkkgkL.paetvsasYd.lEYgkd.kleihkdalkkgkrvlivDDllAtgGtveAaleLikklgaevveaaflielkklkgrkkleek.vkvfsl 166
                 +l+++  ++l +r+ ++k ++++++ + G +++ ++a+ l+v++v  Rk+  +  a+t sa Y+ +  gk+ +l ++k+ ++k++rvli+DD l  g + eA l++++  gae v++ +l+e ++  gr+ l+   +++ sl
  MMETSP1061-20121228|3550_1 656 DLMDACAQELSQRFVQTKPTKIMTVATTGLVIALPMAKYLQVPVVYARKERNVvMADTYSAPYSsKTVGKNrQLLVSKTHVHKSDRVLIIDDFLSSGSSQEALLRILSDAGAEPVGIGVLLEKAYDPGRTALSGFdIPIESL 797
                 56677788999999999999*****************************977516789999997256788889*************************************************99999999888755666666 PP

>> TIGR01367  pyrE_Therm: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00028      0.16      41      92 ..     658     707 ..     631     715 .. 0.79
   2 !   17.2   0.0   1.1e-06   0.00066     100     160 ..     734     798 ..     718     803 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00028
   TIGR01367  41 aeklgeelakkilkaklevdvivsPalGGvilgyevaralsvrsifaereng 92 
                 ++  ++el++  +++  ++  i++ a  G++++  +a++l+v+ ++a +e +
  MMETSP1061-20121228|3550_1 658 MDACAQELSQRFVQT--KPTKIMTVATTGLVIALPMAKYLQVPVVYARKERN 707
                 344456677776666..8999**************************99865 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 1.1e-06
   TIGR01367 100 fevkpGekvvvveDvvttGgsakeaikiieelGgqvvglaaiidr....skgakldegvPllsLk 160
                  +v++ ++v++++D +  G s    ++i+ ++G++ vg++ ++++     + a   +++P++sL 
  MMETSP1061-20121228|3550_1 734 THVHKSDRVLIIDDFLSSGSSQEALLRILSDAGAEPVGIGVLLEKaydpGRTALSGFDIPIESLC 798
                 5899***************************************9944432255566778888876 PP

>> TIGR01203  HGPRTase: hypoxanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.5   1.5e+03     134     146 ..     255     267 ..     250     267 .. 0.86
   2 !   17.7   0.0   8.6e-07    0.0005      14     125 ..     660     779 ..     652     794 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.5
   TIGR01203 134 vdfvgfeipdefv 146
                 +++ +f++pd+++
  MMETSP1061-20121228|3550_1 255 AEYEAFRVPDNWL 267
                 689********96 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 8.6e-07
   TIGR01203  14 elakeieeeyagkkelvvvgvLkGsilFladliralk.....vpvkvdfiavsSYgnsv..essgevkilkdldedik.dkdvLlveDivdtgltlkellellkarkpkslkivtlleKp 125
                  +a+e+++++ ++k+  +++v   +++    ++++l+        + + + +  Y      ++ g+ + l   ++ ++    vL+++D + +g + + ll++l+  +++ + i +lleK 
  MMETSP1061-20121228|3550_1 660 ACAQELSQRFVQTKPTKIMTVATTGLVIALPMAKYLQvpvvyARKERNVVMADTYSAPYssKTVGKNRQLLVSKTHVHkSDRVLIIDDFLSSGSSQEALLRILSDAGAEPVGIGVLLEKA 779
                 6777888888887777888888888888888888888555553345566777777654300344555555555555654788************************************96 PP

>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.2e-06    0.0013      92     168 ..     720     798 ..     624     803 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.2e-06
   TIGR00336  92 aKdhGeggkivG...elkegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsaeeevekeyelkllslv 168
                  K  G++ ++     ++++ ++v++++D +++G+s    +++++ agae +g+ v+l++     +++  + +++++ sl 
  MMETSP1061-20121228|3550_1 720 SKTVGKNRQLLVsktHVHKSDRVLIIDDFLSSGSSQEALLRILSDAGAEPVGIGVLLEKAY-DPGRTALSGFDIPIESLC 798
                 466777766543233688999****************99*************999999887.444444444466666665 PP

>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   2.7e-05     0.016     149     244 ..     665     773 ..     644     781 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.7e-05
   TIGR01251 149 lieelkkkelknlvvvsPDkGaverakkvakklglelaiieKeRds................kenevevtnllgdvegkdvvivDDiisTggTlvkaaelLkekGAkkviva 244
                 l +++ +++ ++++ v   + ++ +a  +ak l++++++ +KeR+                 k+ +  v +  +   +  v+i+DD +s+g +  +  ++L ++GA+ v + 
  MMETSP1061-20121228|3550_1 665 LSQRFVQTKPTKIMTV--ATTGLVIALPMAKYLQVPVVYARKERNVvmadtysapyssktvgKNRQLLVSKTHVHKSD-RVLIIDDFLSSGSSQEALLRILSDAGAEPVGIG 773
                 4444444433333333..36788899999****************99999*****99888765545666666666666.69*************************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.56
# Mc/sec: 1889.53
//
Query:       MMETSP1061-20121228|3554_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 1016.80
//
Query:       MMETSP1061-20121228|3555_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1177.75
//
Query:       MMETSP1061-20121228|3558_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.068   11.0   5.9      0.088   10.6   4.1    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   4.1   2.1e-05     0.088      68     161 ..     161     261 ..      90     278 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.1e-05
   TIGR03499  68 kaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae.........eelrkelkalkellekqlselaleeedperakllkklleagvseelarell 161
                 ++  + +++  +++ ++++++++++ ++a++a++ae  +++++         + l++el+++++lle++ + la  + ++e +++ ++l  ++ +++l+++ l
  MMETSP1061-20121228|3558_1 161 NQGLQPSNTVINTSPRNNNNNNNNNYNNADNARRAEGLANASTqlrsvlqqrAGLESELAQMRRLLEEKKKLLA--KATEEEQSFQQRLALREEQKRLLNDRL 261
                 22222222222222222222222223333333333333332225555666679999999999999999999885..455555555555555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1319.89
//
Query:       MMETSP1061-20121228|3556_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.57
# Mc/sec: 1581.59
//
Query:       MMETSP1061-20121228|3562_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 1161.50
//
Query:       MMETSP1061-20121228|3575_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|3570_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1115.91
//
Query:       MMETSP1061-20121228|3568_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-05   20.9  14.8    2.4e-05   20.9  10.3    1.9  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
  ------ inclusion threshold ------
       0.38    6.8   8.9       0.44    6.6   6.1    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.2      0.26   5.3e+02       5      22 ..      12      29 ..      10      38 .. 0.71
   2 !   20.9  10.3   1.2e-08   2.4e-05      10     155 ..      62     216 ..      49     272 .. 0.60

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.26
   TIGR01642  5 kdrerEksrerdrdkske 22
                +++++E+ r+r+r+k+ e
  MMETSP1061-20121228|3568_1 12 ENKKNEQRRKRYREKTVE 29
                456677777777777654 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 1.2e-08
   TIGR01642  10 EksrerdrdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkd..dkkrslwdvkppkyeavtavqakasqvansvpgiaqkssltstekll.............a 155
                  k r+r+    +  + +R+  + + R+  +r+ + sr +  R+R+r ry+s +  s + ++r + R + +r+ +++   ++ + ++rkr ++    ++   ++r   d + +    v a +a+a+ +a +v g ++ +++t                   a
  MMETSP1061-20121228|3568_1  62 LKDRQRYA---NMTPDQRQTYNAKRREQYHRQSENSR-QRRRERERERYHSLE--SMDAKKRNARRAKLERERYQRLTPAQLESKNRKRRERAAAARSkkAQERNSADGNGTATTVVVAAAAAATVAAPEVVGAVPVAAMTAVADAGgggaggappspptA 216
                 34444444...23334444444444444444333333.334666666666665..5555555555555555555554444444444444433333333005567777888888888888888888888899999******986554434444444444443 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   6.1   0.00022      0.44     176     441 ..      43     150 ..       3     345 .. 0.45

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00022
   TIGR00934 176 lprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldsee.......nayptyndeeedsrh 441
                    +s++ ++ +++l + +l++r+                                                                                                                                                                      ++n++  +r++ n k+re+  +  e+sr  ++ ++ e  ++ +   +k+++ ++++l+ e+       + ++   +++e ++ 
  MMETSP1061-20121228|3568_1  43 SGGGSSSGHSHEDQLATRRLKDRQR---------------------------------------------------------------------------------------------------------------------------------------------------------------------YANMTPDQRQTYNAKRREQYHRQSENSRQRRRERERERYHSLESMDAKKRNARRAKLERERyqrltpaQLESKNRKRRERAAA 150
                 2223333333333333333444444.....................................................................................................................................................................44444444444444444444444444444444444444444333333333344444443332222221111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       476  (0.116041); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 1312.35
//
Query:       MMETSP1061-20121228|3569_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 2079.72
//
Query:       MMETSP1061-20121228|3579_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1903.94
//
Query:       MMETSP1061-20121228|3581_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 221.98
//
Query:       MMETSP1061-20121228|3583_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 492.42
//
Query:       MMETSP1061-20121228|3580_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1010.40
//
Query:       MMETSP1061-20121228|3586_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-13   46.4   0.0    8.4e-13   46.0   0.0    1.1  1  TIGR00092 TIGR00092: GTP-binding protein YchF


Domain annotation for each model (and alignments):
>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0     2e-16   8.4e-13     310     357 ..      22      69 ..      10      73 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 2e-16
   TIGR00092 310 agvihtDlekgfikaevikyedlielkseqeakekGllrleGkdyivk 357
                  g+ih Dl+kgf++aevik ++l++++s ++ake+Gl+r+eG+dy++ 
  MMETSP1061-20121228|3586_1  22 GGRIHGDLQKGFVRAEVIKADELLRFESFRDAKEAGLVRTEGRDYVIX 69 
                 599*******************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 896.43
//
Query:       MMETSP1061-20121228|3587_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1061-20121228|3590_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-48  162.8   0.0    2.2e-48  162.6   0.0    1.0  1  TIGR03855 NAD_NadX: aspartate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR03855  NAD_NadX: aspartate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.0   5.4e-52   2.2e-48      34     229 .]      32     240 ..      15     240 .. 0.95

  Alignments for each domain:
  == domain 1    score: 162.6 bits;  conditional E-value: 5.4e-52
   TIGR03855  34 leedvdivvEaAsqeAvkeyaekiLksgkdllilsvgAlaDrelleklvevakksgrkvyipsGAigGLDalkalsleeieevvlkttKppks.lg..........edikektvifeGsaseavklfPkninvaatlsla.agkd.vkveivaDpevekniHeilveseigeleirvenvPspenPktsylaalsilrllrnlesklvi 229
                   +d ++++EaA q+Av++y+++ L sg dl+i s+gAl+D +l+++l+ +a+ +g ++ +  G +  LD + a+sl+  eev ++ +Kpp + lg           +++e +v+feGs + a+ lfPkn nvaa l+la +g d  + ++vaDp+v+ n  e+++++++g +++ ve  Ps++nP+ts++ als+++ +r+l+ ++v+
  MMETSP1061-20121228|3590_1  32 SGNDWSLCIEAAGQQAVRDYGKRCLASGRDLMITSIGALTDDDLYHELRTTAEANGSRLILCTGSMPALDWMGAASLDDCEEVTITQIKPPGAwLGtpaeadhpdlLELSEARVLFEGSSRVAASLFPKNANVAAMLALAtVGLDrTSARLVADPHVSGNRVELSIRGAAGSMKVDVEAAPSRTNPRTSAIVALSVVKAIRKLSCPVVV 240
                 568999*************************************************************************************87356*******************************************835888899*******************************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.21s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1150.19
//
Query:       MMETSP1061-20121228|3584_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1486.10
//
Query:       MMETSP1061-20121228|3596_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 493.22
//
Query:       MMETSP1061-20121228|3592_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-31  104.0   0.0    1.7e-30  103.2   0.0    1.4  1  TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein
    9.1e-25   84.8   0.6    1.7e-24   84.0   0.2    1.6  1  TIGR02011 IscA: iron-sulfur cluster assembly protein IscA
    2.1e-22   77.1   0.0    3.5e-22   76.5   0.0    1.3  1  TIGR01997 sufA_proteo: FeS assembly scaffold SufA
    3.9e-08   31.1   0.0    2.3e-07   28.6   0.0    1.9  2  TIGR03341 YhgI_GntY: IscR-regulated protein YhgI


Domain annotation for each model (and alignments):
>> TIGR00049  TIGR00049: iron-sulfur cluster assembly accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.2   0.0   1.6e-33   1.7e-30       1     105 [.      97     207 ..      97     208 .] 0.87

  Alignments for each domain:
  == domain 1    score: 103.2 bits;  conditional E-value: 1.6e-33
   TIGR00049   1 itltdkaakkikelleeekee..nkglrvgvkegGCsGlkykleleeek..eedDevve..kdgvkvvvdskslellegleidyveellgsgFkfsNPnakssCgCgkSFs 105
                 i +++ka+k+++el e+++++   ++lr+gv++gGCsGl+y +++++e+  +edDev e  ++ +k vvd ks+ +l gle+dy+eel+g+gFkf NPna++sCgCg+SF 
  MMETSP1061-20121228|3592_1  97 IVIKPKAMKRLRELREKQPNPdaFMVLRMGVRNGGCSGLSYVMDFSTEEdiQEDDEVDEypAEMLKCVVDAKSMLYLYGLELDYSEELIGGGFKFFNPNAEESCGCGSSFG 207
                 56899*************999445689****************99876511567777552257899********************************************7 PP

>> TIGR02011  IscA: iron-sulfur cluster assembly protein IscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.2   1.6e-27   1.7e-24       6     105 .]     102     208 .]      97     208 .] 0.81

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 1.6e-27
   TIGR02011   6 aaakrvnsflanr...gkglglrlgvktsgcsgmayvlefvde..addddlv..fedkgvkividakslvyldgiqldfvkeglnegfkfenpnvkdecgcgesfhv 105
                 +a kr+++   ++      + lr+gv+  gcsg++yv++f  e   ++dd+v  +  +  k v+daks++yl g++ld+  e +  gfkf npn+ ++cgcg sf v
  MMETSP1061-20121228|3592_1 102 KAMKRLRELREKQpnpDAFMVLRMGVRNGGCSGLSYVMDFSTEedIQEDDEVdeYPAEMLKCVVDAKSMLYLYGLELDYSEELIGGGFKFFNPNAEESCGCGSSFGV 208
                 5555555554443111345789******************87612568899855668899*********************************************76 PP

>> TIGR01997  sufA_proteo: FeS assembly scaffold SufA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.0   3.4e-25   3.5e-22       2     107 .]      96     208 .]      95     208 .] 0.86

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 3.4e-25
   TIGR01997   2 vleltdaaatrvrelvkkr..ee.avgirlsvkktGcaGleyalelvsepk..eddvlle..kdGakvfvapeallflkGtevdfvkktlrqglkfnnPnatsacGcGesvel 107
                 v+ + + a++r+rel +k+  ++  + +r++v+++Gc+Gl+y+++  +e +  edd++ e  ++ +k +v+ +++l+l G e+d+ ++ ++ g+kf nPna + cGcG s+++
  MMETSP1061-20121228|3592_1  96 VIVIKPKAMKRLRELREKQpnPDaFMVLRMGVRNGGCSGLSYVMDFSTEEDiqEDDEVDEypAEMLKCVVDAKSMLYLYGLELDYSEELIGGGFKFFNPNAEESCGCGSSFGV 208
                 7888899***********9543314678*****************98876532556555566788999******************************************975 PP

>> TIGR03341  YhgI_GntY: IscR-regulated protein YhgI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.13   1.3e+02      63      95 ..      22      54 ..      14      70 .. 0.84
   2 !   28.6   0.0   2.2e-10   2.3e-07       1      96 [.      97     197 ..      97     200 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.13
   TIGR03341 63 yvdaksvpfledaeidfvtdklGgqltlkaPna 95
                 ++++ v+f + a i   +   G  lt+  P +
  MMETSP1061-20121228|3592_1 22 TLESNVVAFSNTAIIARRKRTCGNCLTIEPPGS 54
                578889999999***************999976 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 2.2e-10
   TIGR03341   1 ititeaaqeylakllekqe...egikirvfvvnPGtpkaecgvayckpdeveeediklef..defsayvdaksvpfledaeidfvtdklGgqltlkaPnak 96 
                 i i   a + l++l ekq      + +r+ v n G +     + ++ +++++e+d+  e+  + ++++vdaks+ +l   e+d++++ +Gg + +  Pna 
  MMETSP1061-20121228|3592_1  97 IVIKPKAMKRLRELREKQPnpdAFMVLRMGVRNGGCSGLSYVMDFSTEEDIQEDDEVDEYpaEMLKCVVDAKSMLYLYGLELDYSEELIGGGFKFFNPNAE 197
                 57888999**********864233678****************************9777644789******************************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 946.68
//
Query:       MMETSP1061-20121228|3599_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1784.49
//
Query:       MMETSP1061-20121228|3591_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 1041.25
//
Query:       MMETSP1061-20121228|3608_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.3   7.3      0.035   11.2   5.1    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
      0.091    9.5  10.2        0.1    9.4   7.1    1.0  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
       0.11    9.2   5.1       0.13    9.0   3.5    1.0  1  TIGR01386 cztS_silS_copS: heavy metal sensor kinase


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   5.1   2.6e-05     0.035      51     129 ..       7      84 ..       3      86 .] 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.6e-05
   TIGR03752  51 giegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakle 129
                 g+  d p +++r  +  +  + k+ + +++e   +k++ e+l +++ ++++ri + l+ +  e++++++q+k++q++ +
  MMETSP1061-20121228|3608_1   7 GAPQDAPLENVRRKIQTIDRVLKDGEPIRQEHAVQKERIESLMSENADLNTRIVS-LQEKLLEAQEQQKQQKQQQQQQQ 84 
                 8889**********************************************99965.44444555555555454444433 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   7.1   7.5e-05       0.1     163     237 ..      11      85 ..       7      86 .] 0.91

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 7.5e-05
   TIGR01843 163 qaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleq 237
                 +a l+++r++++ i++ l++ +++ ++ +v++ ++ +l+ e a+l+  + +l+ +l ++++++++ +++ q+++q
  MMETSP1061-20121228|3608_1  11 DAPLENVRRKIQTIDRVLKDGEPIRQEHAVQKERIESLMSENADLNTRIVSLQEKLLEAQEQQKQQKQQQQQQQQ 85 
                 5678999********************************************999999999999998888888776 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.5   9.3e-05      0.13      41     106 ..      15      80 ..      10      86 .] 0.82

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 9.3e-05
   TIGR01386  41 eelsakleavrelLreeldlkedlkkkaeklddllaehsdlallikdsdgellferaagealvaav 106
                 e+++ k++++ ++L++    +++ + ++e+++ l+ e  dl+ +i + + +ll ++ ++++ ++  
  MMETSP1061-20121228|3608_1  15 ENVRRKIQTIDRVLKDGEPIRQEHAVQKERIESLMSENADLNTRIVSLQEKLLEAQEQQKQQKQQQ 80 
                 68999***********9999999999**********************999988766664433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       505  (0.123111); expected 82.0 (0.02)
Passed bias filter:                      231  (0.056314); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 405.40
//
Query:       MMETSP1061-20121228|3605_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.1    6.2   9.6        6.3    5.2   6.6    1.5  1  TIGR03901 Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain


Domain annotation for each model (and alignments):
>> TIGR03901  Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   6.6    0.0015       6.3       8      27 ..      31      55 ..      29      58 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0015
   TIGR03901  8 gaggagp.....galgLlgLgllal 27
                +agg++p     ++l+Ll+L+ll+l
  MMETSP1061-20121228|3605_1 31 DAGGGRPltmfsLLLLLLLLLLLLL 55
                4666666789974444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       389  (0.0948318); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 700.12
//
Query:       MMETSP1061-20121228|3594_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-101  336.6   0.0   2.5e-101  336.4   0.0    1.0  1  TIGR00212 hemC: porphobilinogen deaminase


Domain annotation for each model (and alignments):
>> TIGR00212  hemC: porphobilinogen deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  336.4   0.0    6e-105  2.5e-101       1     290 [.      43     338 ..      43     341 .. 0.97

  Alignments for each domain:
  == domain 1    score: 336.4 bits;  conditional E-value: 6e-105
   TIGR00212   1 lrigtRgSkLAlaQanlvkeqlkevypele....teiviiktkGdkiqdkplskiggkglFtkeleeallegeiDlaVHSlKDvptvlseglelaavlkRedprDvlvs..rkalsleeLpkgakvGtssvRRkaqlkalrpdlkieslRGNvdtRlkkleegeldaiiLaaAGlkRlgledvitevldpeellpavgqGalavevrkddeelkeilkelsdeetavevtaERaflkeleggCsvpigvyaeveenklklkavvlsrdgkevikeekegnkeeakelglevaeell 290
                 lrigtRgS+LA+aQa + +++l+e++pe++    +ei ++kt+Gd+i+dk l+++ggkglFtkel+ all +e+D+ VHS+KDvpt l+eg+ l +  +Red +D+++   +k+ ++++Lp+g+++Gt+s+RR+aq+ a  p lk++++RGNv+tRl+kl++g +da++La AGlkR+++++ +t vld ee+lpav+qGa++v++r++de+  + ++ l++ +t+v+v +ERafl++l+g+C++pi++ a++ + k+k+++ ++ +dg++ ++ e eg++ +a+++gle+ e+l 
  MMETSP1061-20121228|3594_1  43 LRIGTRGSPLAMAQAFETRRRLQENFPEMNedgaIEICVMKTQGDMILDKSLMELGGKGLFTKELDVALLGDEVDICVHSMKDVPTWLPEGTVLPCNFPREDTNDAFITkdNKYATIADLPDGSVIGTASLRRQAQILAQNPTLKCVNFRGNVQTRLRKLNDGVVDATLLAIAGLKRMDMDKYATAVLDWEEMLPAVAQGAIGVQCREGDERALKYINALNHMDTHVCVNCERAFLEALDGNCKTPIAGQARIIDGKIKFRGLIAMPDGSQKFTVESEGEIDDAVKIGLEAGEKLK 338
                 79************************8664333399************************************************************************9667899******************************************************************************************************************************************************************************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 1368.92
//
Query:       MMETSP1061-20121228|3609_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 761.94
//
Query:       MMETSP1061-20121228|3606_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    9.9   3.7       0.24    8.8   0.1    2.1  2  TIGR00331 hrcA: heat-inducible transcription repressor HrcA


Domain annotation for each model (and alignments):
>> TIGR00331  hrcA: heat-inducible transcription repressor HrcA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1   5.7e-05      0.24      81     132 ..      25      76 ..      16      88 .. 0.78
   2 ?    1.9   0.3     0.007        29      67     112 ..     172     216 ..     170     225 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 5.7e-05
   TIGR00331  81 klteeekraikkqlskekkeeedkvlkeaaelLseltkltavvlk.praeqsk 132
                 +++++++r+ ++q +++++++  k lk+  ++L+++ +l++vvl  pr++q  
  MMETSP1061-20121228|3606_1  25 QQQQQQQRQPRQQQQQQQFHNP-KHLKNRRNVLASIPQLASVVLLdPRKHQRD 76 
                 4566677777777777777777.9****************9998658777765 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.007
   TIGR00331  67 kGyryYvdellkvsklteeekraikkqlskekkeeedkvlkeaael 112
                   y yY+d+  + +k ++++++  kk+ + +  + ed ++++ a++
  MMETSP1061-20121228|3606_1 172 LTYYYYIDNKNNKNKNKNNNNKGSKKRTQTMDRYRED-LIESLASI 216
                 6799********9999999999999999999999995.77766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1280.29
//
Query:       MMETSP1061-20121228|3613_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 335.05
//
Query:       MMETSP1061-20121228|3612_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   11.5  11.7       0.08   10.7   8.1    1.4  1  TIGR02077 thr_lead_pep: thr operon leader peptide


Domain annotation for each model (and alignments):
>> TIGR02077  thr_lead_pep: thr operon leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   8.1     2e-05      0.08       3      23 .]     217     238 ..     217     238 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2e-05
   TIGR02077   3 riSli.ttttiTtTiTtgnGAG 23 
                 ++S   tttt+TtT T g GAG
  MMETSP1061-20121228|3612_1 217 KNSAAgTTTTTTTTTTQGRGAG 238
                 577778***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 948.89
//
Query:       MMETSP1061-20121228|3615_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 599.45
//
Query:       MMETSP1061-20121228|3617_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 226.86
//
Query:       MMETSP1061-20121228|3616_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15    7.5  28.9     0.0023   13.5  14.4    1.8  2  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        1.6    4.9  22.4        2.7    4.2  15.5    1.3  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.7     0.048        99     972     988 ..      63      79 ..       8      91 .. 0.66
   2 ?   13.5  14.4   1.1e-06    0.0023     905    1021 ..     249     369 ..     239     391 .. 0.50

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.048
   TIGR00927 972 dGGdseeeeeeeeeeee 988
                 +GG+   eeeeee++ +
  MMETSP1061-20121228|3616_1  63 NGGQEPIEEEEEEDQRD 79 
                 23322222222222222 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.1e-06
   TIGR00927  905 kGdegeeqkveaeee.eeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdG.Gdseeeeeeeeeeeeeeeeee..eeeeeeeeneeplslewpetrqkqaiy 1021
                    +++e++k +++e  +++d++d+++++++e++d++   + +++++  ++++++++ d+  v++ ++  G  ds++++++++++++++++++  e ee e+e e   +l    ++ k  ++
  MMETSP1061-20121228|3616_1  249 AFNDDENTKNNKDESaKNDDGNDNDNDNDNEKNDNDRESGSDNDDDDDSDSDSDSASDKGSVEDPENPGGyVDSDDDDDDDDDDDDDDDDDDstEFEEYEDEPEGAPTLSNNTAKSKSELF 369 
                  3344444444444430444444444444444444444455555566667777777777777776655444236666665555544333333300333334444444445555555555544 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  15.5    0.0013       2.7      34     129 ..     251     341 ..     218     350 .. 0.45

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0013
   TIGR03490  34 pekkpeakpeenkPkkpkkpd.nkeksensnnks.nseekdeeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqadepnndhadqknnnkvdfs 129
                 ++++ + k+++   +++k+ d n + ++n n+k+ n  e+  ++ ++ ++++  d + +k + e    +p++p    ++d++++d+ d+++++++d+s
  MMETSP1061-20121228|3616_1 251 NDDENT-KNNK--DESAKNDDgNDNDNDNDNEKNdNDRESGSDNDDDDDSDSDSDSASDKGSVE----DPENPGGYVDSDDDDDDDDDDDDDDDDDDS 341
                 222222.2222..112222110222233333333344444444444444444444444444444....444555444555555554555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 2123.14
//
Query:       MMETSP1061-20121228|3620_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.17
# Mc/sec: 504.66
//
Query:       MMETSP1061-20121228|3621_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1448.21
//
Query:       MMETSP1061-20121228|3618_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1112.48
//
Query:       MMETSP1061-20121228|3623_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 1060.63
//
Query:       MMETSP1061-20121228|3627_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-05   19.9   0.0    2.9e-05   19.5   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit


Domain annotation for each model (and alignments):
>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     7e-09   2.9e-05     734     837 ..      14     133 ..       6     148 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 7e-09
   TIGR03315 734 gklvcekmklgekdasGrrrpvetgelveleadaviaavG......eqvdtellk.klgieldekgkvvv.........neetketsvtnvfviGdakkGPativ.eaiadgrkaakails 837
                 + l+ce+ kl   d+ G r++v+tge  +le d  ++++G      ++  ++ ++ + gi ++++g+v +         + +  e++++ ++v G +k+GP+ i+   i+d++ +  +il+
  MMETSP1061-20121228|3627_1  14 DALRCERTKLVG-DDPGSRQAVGTGEFEDLEFDLCLVSIGykglpiDECTSDHYDaRRGILFNDHGRVLSsagdgneneDGNEDESDLAPLYVSGWLKRGPSGIIgTNIGDAKDTVASILQ 133
                 678999999975.67899*********************943333334566777526799999888875422222221133456899****************98457*****99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1001.30
//
Query:       MMETSP1061-20121228|3625_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       335  (0.0816675); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.19s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 1601.24
//
Query:       MMETSP1061-20121228|3629_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-06   23.2   0.0      1e-05   22.9   0.0    1.0  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.5e-09     1e-05      38      94 ..       3      58 ..       2      67 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.5e-09
   TIGR03724 38 klrkeRtrkEarllse.akkagvntPvvydvdpeekkivmeyiegkklkdlleekele 94
                +l k+R r+Ea+ll + a k+g++ P v+ v p   ++ +ey++g ++k +l++++++
  MMETSP1061-20121228|3629_1  3 RLTKSRCRSEAKLLGKcALKSGLRLPKVLRVSPP--SLYLEYLDGPTVKSYLQQRQHQ 58
                6899**********873679**************..9***************997764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 311.97
//
Query:       MMETSP1061-20121228|3633_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 1355.09
//
Query:       MMETSP1061-20121228|3631_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-39  131.2   0.0    1.8e-20   71.3   0.0    2.3  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    4.5e-12   43.5   0.0    1.8e-08   31.6   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      1e-09   35.6   0.0    5.1e-08   30.0   0.0    2.2  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    2.7e-07   28.4   0.0    0.00064   17.4   0.0    2.3  2  TIGR00231 small_GTP: small GTP-binding protein domain
    9.5e-07   26.3   0.0    4.9e-06   23.9   0.0    2.0  2  TIGR00436 era: GTP-binding protein Era
    1.7e-05   21.9   0.0    8.4e-05   19.7   0.0    1.8  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    3.5e-05   20.9   0.0    8.3e-05   19.6   0.0    1.5  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    0.00015   19.0   0.2    0.00032   18.0   0.1    1.6  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0034   14.8   0.8      0.014   12.8   0.0    2.1  3  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
  ------ inclusion threshold ------
      0.023   11.4   2.4      0.068    9.9   0.0    2.5  3  TIGR03156 GTP_HflX: GTP-binding protein HflX


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   6.3e-19   2.6e-16      12      69 ..     207     263 ..     197     285 .. 0.92
   2 !   71.3   0.0   4.4e-23   1.8e-20      66     184 ..     297     429 ..     291     431 .. 0.79

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 6.3e-19
   TIGR03598  12 qlpedklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevneelrlv 69 
                 ++p++ lpeiaf+GrSNvGKSsliN++++ k+l  tS+ PGrTql  ++ +  +++lv
  MMETSP1061-20121228|3631_1 207 DYPKHGLPEIAFLGRSNVGKSSLINSIMR-KNLCLTSRVPGRTQLPYYYGLIPKATLV 263
                 799***********************997.55*****************999998888 PP

  == domain 2    score: 71.3 bits;  conditional E-value: 4.4e-23
   TIGR03598  66 lrlvDlPGYGyakvskeekekwqklieeYLekren....LkgvvllvDirhe...lkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkke.......eekvevllfSslkkegieelkae 184
                  ++vDlPGYGy +++++ +e+wqk  +e L +r++    L++++ll+D+r++   ++e+D+ ++++l++a+ip+++vltKaD+++   + k+++++  + +++       ++++ + ++Ss ++ gi+el+ +
  MMETSP1061-20121228|3631_1 297 GYIVDLPGYGYGRAPTNITEDWQKDTQELLLHRRHeagvLQRLFLLMDARRGmegPNEHDRIVMRWLEDAEIPFTIVLTKADRVSVPLVVKQVNDFCLRYASQqqhqsvvAQSPVIHVTSSARGWGIHELMLS 429
                 589**************************99987545559**********97223579***************************888888877665444443100012345556678888888888888765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   4.5e-11   1.8e-08     176     211 ..     214     249 ..     194     253 .. 0.86
   2 !    9.6   0.0   0.00022     0.089     262     343 ..     340     431 ..     327     440 .. 0.70

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 4.5e-11
   TIGR03594 176 ikiaiiGrpNvGKStLvNallgeervivsdiaGtTr 211
                  +ia++Gr NvGKS+L+N++++++ +++s ++G T+
  MMETSP1061-20121228|3631_1 214 PEIAFLGRSNVGKSSLINSIMRKNLCLTSRVPGRTQ 249
                 589******************************995 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00022
   TIGR03594 262 llvlDategi...seqDlkiaglileegkalvivvNKwDlv...kdekele....elkkeleeklkflkfapivfiSAltgkgveklleaik 343
                 +l++Da++g+   +e+D  +++ +++++ ++ iv+ K D v      k+ +    ++ ++ +++   ++   i+++S  +g g+++l+ +i+
  MMETSP1061-20121228|3631_1 340 FLLMDARRGMegpNEHDRIVMRWLEDAEIPFTIVLTKADRVsvpLVVKQVNdfclRYASQQQHQSVVAQSPVIHVTSSARGWGIHELMLSIE 431
                 57889886552226899999*******************98544222333300013333434444444555578889999******999887 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0   1.2e-10   5.1e-08       9      43 ..     215     249 ..     208     256 .. 0.90
   2 ?    3.2   0.0     0.016       6.7      97     131 ..     349     383 ..     321     433 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.2e-10
   TIGR03918   9 hialfGrrNaGKSsliNaltgqdvaivsdvpGtTt 43 
                 +ia++Gr N+GKSsliN ++++++ ++s vpG T 
  MMETSP1061-20121228|3631_1 215 EIAFLGRSNVGKSSLINSIMRKNLCLTSRVPGRTQ 249
                 79******************************996 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.016
   TIGR03918  97 eaeleeleeelleelkekkipvivvlnkidlkeee 131
                  ++++e ++ +++ l++ +ip+ +vl+k+d ++  
  MMETSP1061-20121228|3631_1 349 MEGPNEHDRIVMRWLEDAEIPFTIVLTKADRVSVP 383
                 45678899999*******************87654 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.6e-06   0.00064       5      39 ..     215     249 ..     212     251 .. 0.91
   2 !    8.5   0.0   0.00082      0.34      38     129 ..     280     386 ..     258     415 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.6e-06
   TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskpgvtr 39 
                  i+++G+++vGKs+L+ns+ +++   t+++pg t+
  MMETSP1061-20121228|3631_1 215 EIAFLGRSNVGKSSLINSIMRKNLCLTSRVPGRTQ 249
                 799********************999999998765 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00082
   TIGR00231  38 trdyvteqieedGktykvnllDTaG..........qedfdairrlyvreverslevvdivilvldve...eglekqtkeiiheakkkgvpiilvvnKiDlkd..dlk 129
                  ++  +  +++d+ t++  ++D++G          +ed +++++  +  +   + v+   +l+ d++   eg++++++++ + ++ +++p+ +v++K D ++   + 
  MMETSP1061-20121228|3631_1 280 RQKKGASAERIDPGTVQGYIVDLPGygygraptniTEDWQKDTQELLLHRRHEAGVLQRLFLLMDARrgmEGPNEHDRIVMRWLEDAEIPFTIVLTKADRVSvpLVV 386
                 455555557777777777788888877777777776677777776666677777777777888887722255679************************99975222 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.2e-08   4.9e-06       3      36 ..     216     249 ..     214     282 .. 0.94
   2 ?   -0.3   0.0      0.29   1.2e+02      94     131 ..     353     391 ..     317     440 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.2e-08
   TIGR00436   3 vailGrpnvGKSTLlNkllgqkisivSpkaqTTr 36 
                 +a lGr+nvGKS L+N+++ ++  ++S+++  T+
  MMETSP1061-20121228|3631_1 216 IAFLGRSNVGKSSLINSIMRKNLCLTSRVPGRTQ 249
                 899**************************98776 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.29
   TIGR00436  94 ke.dellleklqklkapvvlalnkldnkekdkllelidk 131
                 +e d++++  l ++++p++++l k d+     +++++++
  MMETSP1061-20121228|3631_1 353 NEhDRIVMRWLEDAEIPFTIVLTKADRVSVPLVVKQVND 391
                 444899999999999999999999998865555555544 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0     2e-07   8.4e-05     158     180 ..     216     238 ..     210     251 .. 0.80
   2 ?   -0.7   0.0      0.33   1.3e+02      93     151 ..     369     432 ..     362     439 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2e-07
   TIGR03597 158 vyvvGvtNVGKSsliNkllklnk 180
                 + ++G +NVGKSsliN+++++n 
  MMETSP1061-20121228|3631_1 216 IAFLGRSNVGKSSLINSIMRKNL 238
                 579***************97664 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.33
   TIGR03597  93 kvllvvNKidllpksvklekikewlkkeakeeglk.....pvdillvsakkkkglkellelikk 151
                 ++++v  K d +   + +++++++  ++a+++  +        i ++s+++++g++el+  i++
  MMETSP1061-20121228|3631_1 369 PFTIVLTKADRVSVPLVVKQVNDFCLRYASQQQHQsvvaqSPVIHVTSSARGWGIHELMLSIET 432
                 56677777777666666666666655555444333222224567889999********999987 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0     2e-07   8.3e-05     211     244 ..     215     248 ..     203     250 .. 0.91
   2 ?   -3.0   0.0       1.5   6.2e+02     302     347 ..     353     397 ..     340     408 .. 0.59

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2e-07
   TIGR00450 211 klaivGktNvGKSSLlNallkkdraiVsdikGtt 244
                  +a +G+ NvGKSSL+N +++k+  + s ++G t
  MMETSP1061-20121228|3631_1 215 EIAFLGRSNVGKSSLINSIMRKNLCLTSRVPGRT 248
                 6999****************************98 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.5
   TIGR00450 302 ltkddeliitlkkkkkdlllvlNKiDLaeleilkselkltvsllsa 347
                  ++d  ++  l+ ++ ++ +vl K+D ++    ++  +++  l  a
  MMETSP1061-20121228|3631_1 353 NEHDRIVMRWLEDAEIPFTIVLTKADRVSVPLVVK-QVNDFCLRYA 397
                 34455566667788888888888888876666655.3333333333 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   7.9e-07   0.00032     123     154 ..     218     249 ..     213     264 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 7.9e-07
   TIGR03596 123 vvGiPNvGKStliNrlakkkvakvgnkpgvTk 154
                  +G  NvGKS+liN++++k+   + + pg T+
  MMETSP1061-20121228|3631_1 218 FLGRSNVGKSSLINSIMRKNLCLTSRVPGRTQ 249
                 57889************************997 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.3e-05     0.014     127     143 ..     218     234 ..     215     244 .. 0.89
   2 ?   -0.8   0.0      0.49     2e+02     145     182 ..     266     304 ..     256     307 .. 0.45
   3 ?   -3.5   0.0         3   1.2e+03      63     115 ..     373     425 ..     363     431 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.3e-05
   TIGR00157 127 faGqSGVGKSSLiNlld 143
                 f G+S VGKSSLiN + 
  MMETSP1061-20121228|3631_1 218 FLGRSNVGKSSLINSIM 234
                 99************997 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.49
   TIGR00157 145 evkqkvkevseklklGkhTTtsvelfhl.qgGliiDtPG 182
                 +++q+ ++  +++++ k+   + ++      G i+D PG
  MMETSP1061-20121228|3631_1 266 QQQQQQQQQQQQHRRQKKGASAERIDPGtVQGYIVDLPG 304
                 222222223333333333333333333246777777777 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 3
   TIGR00157  63 vvaeakniepiivlnkkdlleeedaekeqleelknlgYkvllvsvkneeglee 115
                 v ++a  ++  +v++++++     a ++q +   +    + ++s+   +g++e
  MMETSP1061-20121228|3631_1 373 VLTKADRVSVPLVVKQVNDFCLRYASQQQHQSVVAQSPVIHVTSSARGWGIHE 425
                 44455555555555555555555555555555555555555555555555555 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00017     0.068     186     214 ..     210     238 ..     205     244 .. 0.88
   2 ?   -1.8   1.1      0.59   2.4e+02     168     187 ..     264     283 ..     240     290 .. 0.49
   3 ?   -1.1   0.0      0.35   1.5e+02     293     347 ..     359     430 ..     344     434 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00017
   TIGR03156 186 ksevptvalvGYTNaGKstllnaltkaev 214
                 k+ +p++a+ G  N GKs+l+n++++++ 
  MMETSP1061-20121228|3631_1 210 KHGLPEIAFLGRSNVGKSSLINSIMRKNL 238
                 57899*******************99875 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.59
   TIGR03156 168 kelekvekqreeqrkkrkks 187
                 ++ ++ ++q+++q+++r+k+
  MMETSP1061-20121228|3631_1 264 EQQQQQQQQQQQQQHRRQKK 283
                 33333333333333333333 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.35
   TIGR03156 293 vLeelgaeeipvllvlNkidkle.................eeeleeleekkeeavlvsAkkgegleeLleai 347
                 v++ l+ +eip  +vl k+d+++                 +++++++ ++++   + s+++g+g++eL+  i
  MMETSP1061-20121228|3631_1 359 VMRWLEDAEIPFTIVLTKADRVSvplvvkqvndfclryasQQQHQSVVAQSPVIHVTSSARGWGIHELMLSI 430
                 566677777778888888887775444433333333222223333333333334445556666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1605.27
//
Query:       MMETSP1061-20121228|3628_1  [L=748]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-257  853.7  36.0   3.5e-257  853.3  24.9    1.0  1  TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase


Domain annotation for each model (and alignments):
>> TIGR01104  V_PPase: V-type H(+)-translocating pyrophosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  853.3  24.9  8.6e-261  3.5e-257      10     692 ..      14     737 ..       8     742 .. 0.95

  Alignments for each domain:
  == domain 1    score: 853.3 bits;  conditional E-value: 8.6e-261
   TIGR01104  10 laviglayallqavlvlkvdvgt.....................ekmaeiskaiseGataflfreyktvavllvvlavlilvllgsvegfs....dlsavafllGavtsllaGylGmkiatranarvtleark.glgkalivafrsGavmGlllaalgllvlaililvfksylg..ddwegliealvglglGassialfarvgGGiytkaadvgadlvGkveagiPeddPrnPaviadnvGdnvGdvaGmgadlfesyvesvvaalvlasisslglnadltallyplvlssvgilvsllttlfvk....ikavkeiekalkkqlllstvlmlvgvavisavalptsftsln.fatqk.evksfqlflcvvvGlvaglligfvteyytstaysPvrdvadssktgaatnviaGlavglksviipiliiaaaiivsyelaglyGiaiaavgllstigivlaidayGPisdnaGGiaemaglseevrertdaldavGnttaaigkGfaigsaalvalalfaafveeaaikkvdv........lspkvliGllvGallpylfssltlkavGraalklveevrrqfrtiPglleg..takpdyarcvdistkasikemiiPgllavltPlvvglllgvealsgllaGalvsGvqiaisasntGGaWdnakkyieagseharslglkgseahkaaviGdtvGdPlkdtsGPslnilikllavvslvlapvlat 692
                  a+++++++ lq +++ k  + +                     ++++ei +ai eGa++fl +ey +   ++v +avli+vl+    g       ++av+fllGa ts+ +GylGmk+a+ +n+r+t +a+k g + ++ +afr+GavmG++l+++g+++l+ + lvfk+ ++  ++w  l e+l+g+glG+s ia+f+rvgGGiytkaadvgadlvGkv  giPeddPrnPa+iadnvGdnvGdvaGmg+dlf+s++es++aalv++s  s+g++    a+++p+v+ssvgi v+l+  + ++    +k+ +++e+alk ql+ +t +m+  v+  ++  lp+sf+    ++++  +   ++   cv++G+v gl ig++teyyts++y+Pvr++ads+ktgaatn+i G+a+g+ks+iip++++a++++ s+ ++ +yG+a+aa+g+ls+++++l+id yGP+ dnaGGiaema+l   vre+tdalda+GnttaaigkGfaigsaalv+lalf+afv+++   + d         l+p  +  l++G+++p+ f++lt+k+vG aa+++v ev+rqf ++P ll+   t++pdy  c+ ist+as+kem+ Pg+++++tPl++g+l+gv a+sgll+Galv+ +q+ais+sn+GGaWdnakkyie+    + +l+ kgs++hkaav+GdtvGdP+kdtsGP+lni++kl+av+slv+a  +  
  MMETSP1061-20121228|3628_1  14 SAIVAILWGYLQFTVIAKIPIQSssgsgeeealaesgtdhalatKRLNEIYEAIYEGAESFLRAEYTVCFWFVVSFAVLIFVLVSWGTGWDmsrgGFTAVSFLLGAFTSMASGYLGMKVAVFSNVRTTVSAQKpGWTACFNTAFRAGAVMGFALCGMGIFMLYGTALVFKQHYPtpEEWIYLTESLTGYGLGGSVIAMFGRVGGGIYTKAADVGADLVGKVVHGIPEDDPRNPATIADNVGDNVGDVAGMGSDLFGSFAESTCAALVIGS--SIGISGGWDAMVFPIVVSSVGIFVCLICSFIAThiwtVKQESDVERALKVQLISTTIVMIPSVYYAAVYYLPASFDLHAtVGNEIlTLTPLKATYCVAMGAVGGLTIGLITEYYTSHSYAPVRELADSCKTGAATNMIYGIALGFKSAIIPVVVLALVVYFSFAICDMYGVALAAIGFLSNLATGLTIDVYGPVCDNAGGIAEMAELHPGVREKTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVTRIRSASGDTlfsdgvnmLEPVTFSFLIIGGMIPFAFAALTMKSVGMAAMEMVMEVQRQFDEKPHLLDEhpTERPDYDACIAISTQASLKEMVAPGAMVIFTPLLTGILFGVTAVSGLLVGALVASIQLAISMSNSGGAWDNAKKYIEKA-SPDSELKGKGSDIHKAAVVGDTVGDPFKDTSGPALNIVMKLMAVLSLVFADTFYA 737
                 6899999999999999999888888999**************99***************************************9877776644445***********************************984599**********************************9963368999****************************************************************************************9..9*************************99998888888***********************9**************9843133333134678899**************************************************************************************************************************************************************998887778888888************************************************9875589****************************************************************************9.6788899******************************************987754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 1862.79
//
Query:       MMETSP1061-20121228|3634_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 533.96
//
Query:       MMETSP1061-20121228|3636_1  [L=800]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00023   16.8  87.9     0.0019   13.8  21.5    3.2  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
          2    3.8  88.3      0.067    8.6  29.2    3.3  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8  21.5   9.1e-07    0.0019     265     470 ..      44     250 ..      26     258 .. 0.66
   2 !    8.2  34.6   4.5e-05     0.092     673     980 ..     161     469 ..     156     477 .. 0.64
   3 !    7.0  12.1    0.0001      0.21     741     949 ..     503     714 ..     482     738 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9.1e-07
   TIGR02168 265 leeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleeles...rleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeelee 470
                 +++++e++ +e++e +e+ ++++k+l ++++  +rl +++e+  + l  + +++e++ ++++  e+ +++++  +++ +ee+++l+ + + +e++++++ ++l++l++    l+++ e+++++++++++l++++++ ++e  +l+a+l+++ e+ + +k++  +++++ +e ++e+ +l++e++e e e  +l++++ ++++ ++++ee
  MMETSP1061-20121228|3636_1  44 KTTQWETTISENKESRESSTAARKQLADTTKSFKRLVKNVEVSGKTLG-STSSEENVAATVKAIEAVSKQARVTVKSYQEEIDNLTRRSKGIESAFDKLTNALQDLQDpsgLLASAMEQMNAQQQQIHQLTQKVEEVSNENVSLDAKLQKSIEEGRAAKSSA-SANSSSKEEKEEIMQLRREVAEYEVEFRSLKNQDITIRKLEKRIEE 250
                 567778888888888888888888888888888888888887777765.56666677777777777777777778888888888877777777777776666666655111445666666777777777777777777777777777777766643333333.4444555566667777777777777777777766666665555543 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 4.5e-05
   TIGR02168 673 silerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleer...laqlekeleeleee.reeleeeleeaeeelkeaeeeieeleaeie.qlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleel..eeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkrle 980
                 ++ +++++i +l++++ee+ ++  +l+++l++  +e +++++ ++  ++ ++e+++++ +l+ e+++ e e ++l+++   +++lek++eel++  +ee +++le a++el+e+e +++++  e e ++++++++l+ +l++  a   ++++++ e++e++ +   + aa+  + + l + +e+ +  + ++++e +el+ + ++l  +++ + l  + +s   ++a l +e+++ ++e+ el+++v++l++e++ +++++ + +++l++    ++e++erl++e + ++e++e+ ++   +  e++++el+ l+
  MMETSP1061-20121228|3636_1 161 QMNAQQQQIHQLTQKVEEVSNENVSLDAKLQKSIEEGRAAKSSASA-NSSSKEEKEEIMQLRREVAEYEVEFRSLKNQditIRKLEKRIEELQQGgEEEFQAKLEAAKQELAETEGRRTTEALEREaAMERKVQTLQLQLKAEAAGRAATNTHMLEASEGAGE---REAAWDAQRRILVDDAERVRVMLHEASRERDELRLKVAALdgSSDGKPLATAPSSGGINVADLLNERQAYEAEVAELSHTVNALREEMSVRDNAMVDESRALQSKIDALEEQNERLNSELSHTAEQLEAAPS--RSLVESMKRELRILK 469
                 5566777888888888888888888888888777777776644444.33344445666666666666666665555432225555555555554313444555555555555555555444433330334445555555555555555555555555555444...4455555555555566666666666666666666666655114445555666667778888899999*************************************999***********************99..455566666666555 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0001
   TIGR02168 741 ekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerlesle...keiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlse 949
                  ++ +++e +l +++++++el+++ e+ ++e++e+e+++  ae+ i++le++++++ ++ ++  ++ + + + l    ++ + +++ l+       + a+ + +   +ee++++ +  +  + ++ ++l++++++le+e ++++ke + + e  ++lr++ ++l e++r l++ +k+  +++++  +++++ +l+le le++ +   + +++
  MMETSP1061-20121228|3636_1 503 VAKLRRMETDLVKERNQNSELTQRHESFTKEIKELEQAKVDAERVIASLEQDLDRAISSSTTKPKEEKPVTDVLPMAPSDPNALQSVLDPTApppPRSAKDTSSKSSAEEKMSDDRSVANIIMSQRDRLRARCDALEAERDSFKKELQIQVESAESLRADNTKLFEKMRYLQSYNKNSSNSRSNPYSRQNSRDLDLEALEQRYEASVDPFRQ 714
                 45667777778888888888888888888888888888888888888888888888888888888777777777755555555555555444111344444444455555566666666667777888888888888888888888888888888888888888888888888888888888888888888888888888877665555544 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  29.2   3.3e-05     0.067     229     469 ..      51     303 ..      30     338 .. 0.58
   2 ?    3.4  15.7    0.0012       2.5     719     895 ..     382     558 ..     321     576 .. 0.42
   3 ?    2.4   6.0    0.0025       5.2     688     798 ..     618     728 ..     598     747 .. 0.56

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 3.3e-05
   TIGR02169 229 llkelealekqkekiekelaeleeelekleeeieelekelee..iekkleelnkkieklgeeeqlavk...ekleelkaeiekleraiaekeeeledaee...rlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkre...ldrlleelkrleeel.aelkaelerieekiaeleeeleelaeeik.kaeqkleqlkedlekae 469
                  ++e ++ +++  + +k+la+ +++ + l +++e   k+l +   e+++++  k ie+ +++  ++vk   e++ +l+   + +e+a ++  + l+d+++    la a +++++++++i++l +++ee+  e  +l ++l+++ ee ++ ++ + +   +++e +ee ++l++++ +++ e  +lk++   +++l  + ++l++ + +e +a+le++++++ae e ++++ a e + + e+k+++l+ +l+++ 
  MMETSP1061-20121228|3636_1  51 TISENKESRESSTAARKQLADTTKSFKRLVKNVEVSGKTLGStsSEENVAATVKAIEAVSKQARVTVKsyqEEIDNLTRRSKGIESAFDKLTNALQDLQDpsgLLASAMEQMNAQQQQIHQLTQKVEEVSNENVSLDAKLQKSIEEGRAAKSSASAN-SSSKEEKEEIMQLRREVAEYEVEFRSLKNQditIRKLEKRIEELQQGGeEEFQAKLEAAKQELAETEGRRTTEALEREaAMERKVQTLQLQLKAEA 303
                 4456666667777777777777777777777666666665441145566666667777777766666422245666665555555555555544444444111456677777777777777777777777777777777777777666666655443.344555666666666666666666666632111233333334433332145666677777777776665555444443134555555555555444 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0012
   TIGR02169 719 ieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleekla.klkealedleaelseekieeieeelekleeevsrie.arleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereel 895
                 + ++ +e+++ e+e ++l++ +++l+e++s  ++++ ++ + l++    +ee++e+l+ +l +  e+lea  s++ +e +++el+ l+    + e   + + + e+  ++  +++ ++    l+++ + +e    +++++  el ++ e++ +e++ele+a  + e   + L+++ +++
  MMETSP1061-20121228|3636_1 382 VADLLNERQAYEAEVAELSHTVNALREEMSVRDNAMVDESRALQSKIDALEEQNERLNsELSHTAEQLEAAPSRSLVESMKRELRILKRLEYNAEdPEMPDSDPEIAGRN--EDQGNDLESVLVAKLRRMETDLVKERNQNSELTQRHESFTKEIKELEQAKVDAERVIASLEQDLDRA 558
                 33344444444444444444444444444444444444444444444444444444321334444444444444444444444444443222222023333333333333..3333444444444444444444444444444444444444444444444444444444444444443 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.0025
   TIGR02169 688 ereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeie 798
                  +  + ++s+++r++ r d+l+++ +  +k+++   + +e l++++ kl e++  l+++ ++ ++ + +  +++++ + ++e+le++ ++  +   +  +++++ k++e++
  MMETSP1061-20121228|3636_1 618 RSVANIIMSQRDRLRARCDALEAERDSFKKELQIQVESAESLRADNTKLFEKMRYLQSYNKNSSNSRSNPYSRQNSRDLDLEALEQRYEASVDPFRQFSKSERQRKLQEMS 728
                 222345566666666666666666666666666666666666666666666666666666666666666666666666666666666665555555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       568  (0.138469); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.33s 00:00:01.18 Elapsed: 00:00:00.81
# Mc/sec: 1303.60
//
Query:       MMETSP1061-20121228|3639_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.41
# Mc/sec: 1226.53
//
Query:       MMETSP1061-20121228|3640_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.21s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 2357.97
//
Query:       MMETSP1061-20121228|3643_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 1483.56
//
Query:       MMETSP1061-20121228|3642_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 380.74
//
Query:       MMETSP1061-20121228|3641_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   13.4   0.1      0.031   12.6   0.1    1.6  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   7.6e-06     0.031     104     143 .]     242     284 ..     171     284 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.6e-06
   TIGR01444 104 aglekvdllKiDvEGaEle....VLrglaetleekvpaivlevh 143
                 ++   +dl KiD+E++E++     L++  ++l   v+++++e+h
  MMETSP1061-20121228|3641_1 242 HEKGTIDLMKIDCERCEYDqyqqWLKD-WKELGMTVRQVMIEIH 284
                 333479************822223444.2335556777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.44
# Mc/sec: 998.92
//
Query:       MMETSP1061-20121228|3645_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 625.21
//
Query:       MMETSP1061-20121228|3644_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-77  257.5   2.7    1.9e-77  257.3   1.8    1.0  1  TIGR00323 eIF-6: putative translation initiation factor eIF-6


Domain annotation for each model (and alignments):
>> TIGR00323  eIF-6: putative translation initiation factor eIF-6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.3   1.8   4.8e-81   1.9e-77       1     215 []       4     224 ..       4     224 .. 0.97

  Alignments for each domain:
  == domain 1    score: 257.3 bits;  conditional E-value: 4.8e-81
   TIGR00323   1 rvalsgnpeiGvyakvteevalvavnleekfesaleeeLe..vevlktkiaGsslvGalavgnkrGllv....sdqvldeeldelkkslevevieerltalGnvlllnddkavvspelekdvkekieDvlevevekgtiaglklvGsaavvtnrGgLvnPqvseeeleelksllkvelvaGtvnkGttvvGaglvanskgavvGedttgpELaiiEealgl 215
                 r a++++peiGv++ +t+++al +++++e+f+s+le+eL   v+v++ +i+G + vG+ +vgn rGllv    +dq+l++++++l++ + v+++eerl+alGnv++ nd++a+++p+ +++++e i+Dvl+vev+++t++g  lvG++  ++n+Gg+v+P++ ++++eel+sll+++lvaGtvn+G++v+G g ++n+  a vG dttg E++++E++++l
  MMETSP1061-20121228|3644_1   4 RCAFENSPEIGVFSALTNSYALAGIGGSENFYSTLEAELIehVPVIHATIGGGRYVGRTTVGNVRGLLVpnttTDQELQHLRNSLPDKVVVQRVEERLSALGNVICTNDHVALIHPDTDRETEEIISDVLGVEVFRQTVGGQALVGTYMNISNQGGMVHPRTTVQDMEELSSLLQIPLVAGTVNRGSDVLGGGFIVNDWSAFVGLDTTGTEISVVESIFKL 224
                 679**********************************99558***************************8888889999999999999**********************************************************************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 1108.71
//
Query:       MMETSP1061-20121228|3647_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 515.96
//
Query:       MMETSP1061-20121228|3646_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1967.56
//
Query:       MMETSP1061-20121228|3654_1  [L=1317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00027   18.4   0.0    0.00057   17.3   0.0    1.6  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0015   15.3   0.0     0.0026   14.5   0.0    1.3  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
  ------ inclusion threshold ------
      0.024   10.4   0.0      0.041    9.6   0.0    1.2  1  TIGR01448 recD_rel: helicase, RecD/TraA family


Domain annotation for each model (and alignments):
>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   4.1e-07   0.00057      12     123 ..    1034    1147 ..    1027    1168 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 4.1e-07
   TIGR03420   12 atldnFlagenaellaalrelaeakaerllylwGesgsGksHLLqAacaaaeeagksa.....iylplkelaqllvevlegleqaelvalDdvealagereweealfdlynrlresg 123 
                  ++l++F+ g+  +  + l+ l    + +++ l+G++g+Gk+ +++A+c+++ ++++s      +++p +   + + ++ ++l ++  +++D+ ++   e +  +++++ + +  e++
  MMETSP1061-20121228|3654_1 1034 PKLKDFIVGREVQQYSILNDL---CTTDVIRLFGKPGVGKTAIVSAVCDHILQRSRSFpfdclFWFPSQGSIDSTSSLYQNLLSFITLMMDESNVNITEGSEPRKMLQSIEKNAENK 1147
                  789999999999999999988...9999************************99887522222456666666666666777777777777765555544444555555555555555 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.9e-06    0.0026      41     141 ..    1058    1159 ..    1042    1199 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.9e-06
   TIGR02928   41 snvliyGktGtGKtavtkkvlkeleeaaeekdvrvstvyvnCqelsteyqvlvelvnql..aeseeevp.etGlstkevfeelvkeleeredsliivLDEiDkl 141 
                  + + ++Gk+G+GKta++ +v++++ + +++   ++         +++  ++ ++l+  +     e++v  ++G   +++ + + k  +++++sl++vLD   + 
  MMETSP1061-20121228|3654_1 1058 DVIRLFGKPGVGKTAIVSAVCDHILQRSRSFPFDCLFWFPSQGSIDSTSSLYQNLLSFItlMMDESNVNiTEGSEPRKMLQSIEK--NAENKSLLLVLDICSYE 1159
                  446699******************9999998888666655555556666666666666544333444431456666666666644..46678899999955555 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0     3e-05     0.041     322     363 ..    1041    1082 ..    1011    1089 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 3e-05
   TIGR01448  322 lelseeqkealktaiqdkvviltGGPGtGKtTvtkaiielae 363 
                  ++ +++q ++l+++    v+ l G PG+GKt ++ a+ ++  
  MMETSP1061-20121228|3654_1 1041 VGREVQQYSILNDLCTTDVIRLFGKPGVGKTAIVSAVCDHIL 1082
                  556889*******************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.67u 0.17s 00:00:00.84 Elapsed: 00:00:00.78
# Mc/sec: 2228.59
//
Query:       MMETSP1061-20121228|3658_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 447.82
//
Query:       MMETSP1061-20121228|3655_1  [L=1062]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-37  127.6   1.4    5.3e-31  105.7   0.0    3.2  2  TIGR03388 ascorbase: L-ascorbate oxidase
    2.7e-36  123.3   2.2    5.6e-34  115.6   1.5    3.5  1  TIGR03389 laccase: laccase
    3.1e-29   99.7   6.1    9.3e-14   48.6   0.2    4.1  4  TIGR01480 copper_res_A: copper-resistance protein, CopA family
    3.8e-23   79.6   1.5    1.1e-17   61.6   0.1    3.2  2  TIGR03390 ascorbOXfungal: L-ascorbate oxidase
    1.2e-11   41.8   7.6    1.8e-11   41.1   5.3    1.3  1  TIGR00955 3a01204: pigment precursor permease


Domain annotation for each model (and alignments):
>> TIGR03388  ascorbase: L-ascorbate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   6.5e-34   5.3e-31      30     322 ..      71     373 ..      54     429 .. 0.78
   2 !   18.1   0.4   2.3e-07   0.00019     478     525 ..     552     599 ..     473     617 .. 0.83

  Alignments for each domain:
  == domain 1    score: 105.7 bits;  conditional E-value: 6.5e-34
   TIGR03388  30 pGptirakaGdtivvelknklltegvvihwhGirqiGtpwadGtagvtqcainpgetfiykfvvdk.pGtylyhghyGmqrsaG...lyGslivevadgekepfkydgefnlllsdwyhksiyeqevglsskplrwiGepqsllinGrgrfncslaakfskaslkecklk..eneecapailkvvpnktyrlriasltalaalnlaieghklvvveadGnyvepfavkdldiysGetysvllk..tdqdpsrnywisvgvr.grkpktpqal.avlnylpnsasklpptppp..vtpawddvers 322
                  G  i+ ++Gd + v+l+n l t g+++h+hG     +   dG+ g+tqca+ p etf+y+f+vd+ pGty yh+h G     G   ++G liv+++++ +     ++++n +   +    +y +e  l     + + e+ sl +n  g  n  ++ + +  ++ + + +    +   + +++v p+ ty++r+    +  a+ ++i++  + v+ ad + +ep++v+++ +++Ge + v ++  td +  + +wi  +++ + k+   +++ a+ln l+   s++p ++++    p  d v++s
  MMETSP1061-20121228|3655_1  71 MGKPIHVSEGDRLEVSLNNYLPTTGLSLHFHGFEMRDSLVYDGVVGITQCAVSPYETFVYNFTVDEvPGTYWYHTHAGFLGVDGynaIKGPLIVHPRHSPNLLELSETNRNEIAGSHSSLISYGNERILFFSDGSLLSES-SLYMNQLGGLNPPISKNDDGFTVGTIDYHfgTCNGKLREVVHVFPGETYKFRVLNGGSHFAFRIHIDDFAMKVIAADSELLEPLEVDEIILHAGERFDVEITipTDFEGGERFWIRADTVeSSKQGYQNGVrAILNVLA-PGSTYPFSTDSdvPDPLKDIVSSS 373
                 5788999*********************************************************9769********8765554422288******997765555556777777766666666777777776677778775.8999999999988776665555555544410455567899*********************************************************9987633799999*****887651555555555526777653.334444444430034444444444 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 2.3e-07
   TIGR03388 478 pilrntvvvfpyGwtalrfradnpGvwafhchieshlfmGmGvvfaeg 525
                  +l++t ++   G  a r ++++p +w+ hch+++h   Gm  v++ g
  MMETSP1061-20121228|3655_1 552 GVLKDTFILPAGGAVATRIHTNEPALWFAHCHLDTHKSDGMAFVLNVG 599
                 468999988888999**************************9998755 PP

>> TIGR03389  laccase: laccase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.6   1.5   6.8e-37   5.6e-34      20     539 .]      60     617 ..      46     617 .. 0.71

  Alignments for each domain:
  == domain 1    score: 115.6 bits;  conditional E-value: 6.8e-37
   TIGR03389  20 stksiltvngkfPGPtlkareGdkvvvkvtnrv.kynvtlhwhGvrqlrngwadGPeyitqcPirpGqsyvykftitgqrgtlfwhahiswlr....atvyGalvilPkkg.ssyPfpkpdkeva.......lilge...wwkadveavinqa....lktGaaPnvs...daytinGkpGalyncskkdtfklkvekgktyllriinaalneelffaianhkltvvevdatyvkpfktkvlliaPGqttdvllkadks..p.kkyliaarayadaviavdnttavaileykktsskaklsl.palPa.lndtaaaakfseklkslnskkypakvPkkidrr..lfftvglgldacpeetckgpnGsrlaasinnisfvlPtva..llkahyski.sGvfttdfPekPplkfnytgenlpknletskgtkvvrlkfnstvelvlqdtsilaseshplhlhGynffvvGkGfGnfdpk......kdpakfnlvd..........P....verntvgvPtaGwvairfradnPGvwllhchlevhltwGlkmaflvenGkepnekllpPpkdlPkc 539
                 + k+i +   ++ G  +++ eGd+++v ++n + ++ ++lh+hG +   +   dG   itqc + p +++vy+ft+    gt ++h+h  +l      ++ G+l+++P+++ + + +++++++ +       + +g+    + +d + + + +    +  G++P +s   d +t+     +  +c  k   +++v +g+ty +r++n      +   i +  + v+++d+  + p++ + +++  G+  dv ++   +    ++++i a + +++++ ++n  + ail+     s+   s+ + +P  l d   ++k  e  k++n   y+ +  k+  ++   +    l     p    +    ++ ++s+ ++ ++  +++   l+ah+ +i +G++ ++  e+P +++ + + +  ++l   + t +++++  stv ++ ++ s++   +hp+hlhGy++ ++   +   d++      k  + f+l d          P    v ++t  +P++G va r ++++P +w+ hchl+ h++ G++ +  v n +++ + +   p+d+P+c
  MMETSP1061-20121228|3655_1  60 EVKHIESSY-TLMGKPIHVSEGDRLEVSLNNYLpTTGLSLHFHGFEMRDSLVYDGVVGITQCAVSPYETFVYNFTVDEVPGTYWYHTHAGFLGvdgyNAIKGPLIVHPRHSpNLLELSETNRNEIagshsslISYGNeriLFFSDGSLLSESSlymnQLGGLNPPISkndDGFTVGTIDYHFGTCNGKLREVVHVFPGETYKFRVLNGGSHFAFRIHIDDFAMKVIAADSELLEPLEVDEIILHAGERFDVEITIPTDfeGgERFWIRADTVESSKQGYQNG-VRAILNVLAPGSTYPFSTdSDVPDpLKDIVSSSKRLEDRKTVN--CYSRHEMKTATHQggCLPITDLKSAGLP---SNWDSIKHSTSSVPEVHYADFEFSpyPLHAHFVRIdDGLYIQH--ENPSKAMIHPTFE--STLDFHQNTAMMNVSAHSTVIIIWRNKSLM---DHPMHLHGYKMEILKIEMPTRDEDctlskcKLNTAFDLKDsevfrsleraPigsgVLKDTFILPAGGAVATRIHTNEPALWFAHCHLDTHKSDGMAFVLNVGNYHSETNAMWI-PDDYPSC 617
                 444444333.3458889**************984578*****************************************************99622225799*******9862456777777653212222113344323334455554444431110345889*998777899**99999999*************************9999999999******************************999877555432459************9999986.5678877765554443333556641455555555555556655..3333333332222112333334444444...2333456777888888888776652269******726888653..4555555444444..357888899******************997...8***********99888876664411111122334666663333322233222225689999********************************9888888888877777665.689**99 PP

>> TIGR01480  copper_res_A: copper-resistance protein, CopA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.2   1.1e-16   9.3e-14      67     165 ..      64     169 ..      30     177 .. 0.81
   2 !   31.8   0.0   1.4e-11   1.1e-08     266     349 ..     255     344 ..     243     361 .. 0.83
   3 !    9.5   0.2   7.7e-05     0.063     512     538 ..     484     510 ..     468     524 .. 0.80
   4 !    9.8   0.0   6.3e-05     0.051     537     591 ..     543     597 ..     532     599 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 1.1e-16
   TIGR01480  67 itvngslPgPllrwreGdtvklrvtntld.eetsihwhGillPaqm..dGvPGlsfaGiapGetftyrfkveq.sGtywyhshsafqeqaG...lyGalvidPlee 165
                 i    +l g  +   eGd +++++ n l+ +  s+h+hG  +   +  dGv G++   ++p etf y+f+v+   Gtywyh+h++f    G   + G+l++ P ++
  MMETSP1061-20121228|3655_1  64 IESSYTLMGKPIHVSEGDRLEVSLNNYLPtTGLSLHFHGFEMRDSLvyDGVVGITQCAVSPYETFVYNFTVDEvPGTYWYHTHAGFLGVDGynaIKGPLIVHPRHS 169
                 455556777788999**************6678******999765434***********************8636***********98877222579999999765 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 1.4e-11
   TIGR01480 266 pGekvrlrfingsamtyfdvriPGlklkvvavdGqyvePvsvdefrialaetydvlve.Pse...ddaftifaqd..sdrtGyarGtlav 349
                 pGe  ++r++ng++   f + i  + +kv+a+d  ++eP+ vde+ +  +e +dv +  P++    + f i a+   s + Gy  G  a+
  MMETSP1061-20121228|3655_1 255 PGETYKFRVLNGGSHFAFRIHIDDFAMKVIAADSELLEPLEVDEIILHAGERFDVEITiPTDfegGERFWIRADTveSSKQGYQNGVRAI 344
                 9******************************************************66436652224678888875114567888876665 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 7.7e-05
   TIGR01480 512 gerlrvvlvndtmmahPihlhGlwsel 538
                    + ++  n ++m hP+hlhG+ +e+
  MMETSP1061-20121228|3655_1 484 HSTVIIIWRNKSLMDHPMHLHGYKMEI 510
                 556778999*************98876 PP

  == domain 4    score: 9.8 bits;  conditional E-value: 6.3e-05
   TIGR01480 537 eledadgefqvrkhtvdvaPgskvsfrvradalGrwayhchlllhmeaGmlrevk 591
                  le a     v+k t  ++ g+ v+ r++++++  w  hchl  h   Gm  +++
  MMETSP1061-20121228|3655_1 543 SLERAPIGSGVLKDTFILPAGGAVATRIHTNEPALWFAHCHLDTHKSDGMAFVLN 597
                 56666666778999************************************76655 PP

>> TIGR03390  ascorbOXfungal: L-ascorbate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.1   1.3e-20   1.1e-17      30     285 ..      64     331 ..      37     346 .. 0.75
   2 !   14.0   0.1   3.6e-06    0.0029     494     534 ..     560     601 ..     471     604 .. 0.65

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 1.3e-20
   TIGR03390  30 vvvnGtsPGPelrlqegqrtwirvyndledenvtlhwhgltartapfsdGtpaasqwPiPpGhffdyevkteledaGsyfyhshvglqav....taaGalivedaekppy.....kydderilllsdffskkdeeie...qG.llstpfkws....GeteavllnGksvalsqeadvkpsgeck.levidvepGktyrlrfigatalslvslgiedhenlevieadGsytkplkidklqlasGqrysvllkaktedelkaldkrqyflqfetrd 285
                 +    t  G  +++ eg+r  + + n l+ + ++lh+hg+  r +   dG    +q  + p + f y+  ++ e  G+y+yh+h g+  v    + +G+liv+  ++p+      +  +e++   s   s  +e i    +G lls+   ++    G    +  n ++ ++++ +   ++ + k +ev++v pG ty++r++   +    ++ i+d   ++vi ad +  +pl++d++ l +G r++v ++  t+ e      ++++++ +t +
  MMETSP1061-20121228|3655_1  64 IESSYTLMGKPIHVSEGDRLEVSLNNYLPTTGLSLHFHGFEMRDSLVYDGVVGITQCAVSPYETFVYNFTVD-EVPGTYWYHTHAGFLGVdgynAIKGPLIVHPRHSPNLlelseTNRNEIAGSHSSLISYGNERILffsDGsLLSESSLYMnqlgGLNPPISKNDDGFTVGTIDYHFGTCNGKlREVVHVFPGETYKFRVLNGGSHFAFRIHIDDFA-MKVIAADSELLEPLEVDEIILHAGERFDVEITIPTDFEG----GERFWIRADTVE 331
                 44555777999*********************************************************9876.789***********9884443569*****9888876521111222333444455556666666322244366666555512214445577778888887666444444443368****************9999999*******9.*****************************9988776443....456788877766 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 3.6e-06
   TIGR03390 494 apa.GwrawrirvtnpGvwmvhchvlqhmvmGmetvfvfgda 534
                  pa G  a ri   +p  w  hch+  h+  Gm+ v  +g+ 
  MMETSP1061-20121228|3655_1 560 LPAgGAVATRIHTNEPALWFAHCHLDTHKSDGMAFVLNVGNY 601
                 344167899****************************99985 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   5.3   2.2e-14   1.8e-11     354     612 ..     736    1009 ..     671    1015 .. 0.80

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 2.2e-14
   TIGR00955  354 vlrdplllkvrllqvivvavligliylg..qeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasgl..YrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallin..qwsdvkeie..lleantteecpssg..eeiLeels.....feaadl...aldllilvvlilvfrllaylalrir 612 
                  + r   +  +r+ +v+ +a+l+g ++ +   + t++g  +  + lF+++t  tF+ ++++++   a l  +     + +    l    +++ +         p++++ ++++++g+ + + +++++ + + l ++  +++g  l+  f+ + l++s+  +++   l+ +Gf+ +   +P  + w++ylS +++++ ++l     wsd+ ++    +++ t+e + + +   + L++       f++++    a +ll+l+vl+l ++l +++ + ++
  MMETSP1061-20121228|3655_1  736 SYRPGCINPLRVFEVTGLATLTGYLFYDvgNNPTATGLSEKYSLLFFSITLWTFTRMYPAVPNYRAWLNNLQSTCDEFTtgSDLAILCITRCIVVFGNEAWWPMIYCFVCFPLAGMFRHIFSVIIIGIFLALNTLCYVALGGALGVSFDFVPLGMSMSTIISQTTLVAAGFYTQ---LPLSLSWIRYLSPVFWTYRGILKTalRWSDTYTCVrgQTDVGTNECYLEFNpgIDALKRRGlnvasFNNKQHngvAVELLALFVLFLALQLYTFFSVYVS 1009
                  44556677899***************984355577899************************999888777654444331135667788999999999**************************************************************************85...8********************9762368888888777666666654444432355566655333335544445558888999999999999988877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.14s 00:00:00.77 Elapsed: 00:00:00.67
# Mc/sec: 2092.13
//
Query:       MMETSP1061-20121228|3657_1  [L=754]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-26   88.7   0.0    5.4e-25   85.9   0.0    2.0  2  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    7.4e-14   49.3   0.0    5.5e-12   43.2   0.0    2.7  2  TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
    6.4e-08   29.8   0.0    1.2e-07   28.9   0.0    1.4  1  TIGR02143 trmA_only: tRNA (uracil-5-)-methyltransferase
    5.5e-07   27.1   0.0    9.6e-07   26.3   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    3.6e-05   20.8   0.0    6.3e-05   20.0   0.0    1.3  1  TIGR00536 hemK_fam: methyltransferase, HemK family
     0.0019   16.3   0.1     0.0053   14.9   0.1    1.7  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0021   15.2   0.0     0.0048   14.0   0.0    1.5  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0043   14.2   0.1     0.0073   13.5   0.0    1.3  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
     0.0058   13.9   0.1      0.011   13.0   0.1    1.4  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
  ------ inclusion threshold ------
       0.01   13.1   0.2      0.021   12.1   0.1    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
      0.031   11.6   0.1      0.057   10.8   0.1    1.3  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.17        62     174     207 ..     343     376 ..     330     395 .. 0.81
   2 !   85.9   0.0   1.4e-27   5.4e-25     242     432 .]     481     701 ..     439     701 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.17
   TIGR00479 174 yneekekgklrsivlrigretgelavvlitalek 207
                 y++ +++g  rsi++r   +tg+++++ + a  +
  MMETSP1061-20121228|3657_1 343 YENGVHRGFWRSITIRSSERTGQVMIIVVHASPE 376
                 778899999*****************99987644 PP

  == domain 2    score: 85.9 bits;  conditional E-value: 1.4e-27
   TIGR00479 242 GeeteviaGeeviyellgdvklelsardFfqvnseqteklvdralealelqgee....kvvDaycGvGtftlplAkq..aksvvgvevvkesvekakrnAelngian......veflageleevlpklsk.eki..sad.....kvllDPpRkGcaaevlreiiklkp.krivYvsCnPa.tLarDlevLl......keG..YkiekvqvvDmFPhtaHvE 432
                  + ++ ++G ++i e+lg   +++s+ +Ffqv ++ +e l++ + + l+  g +    ++ D+ cG Gt++l   ++  + +vvg+++ + ++++a  nA +ng  +        f+a  +e v+ +  + ++     d     + ++DP+R G  + v+++i   k  +r+vYvsCnP+  L+ D+  L+        G  +k ++ q+vDmFP t H E
  MMETSP1061-20121228|3657_1 481 SHPVQHVYGSKYIEEKLGKNTYQISPGAFFQVTTAGAEILYNVVADRLKEVGTDpgntLMFDVCCGTGTIGLHCISEgvVGKVVGIDISEPAIDDALANAIRNGYGDeeskgkTRFVASRAELVMGQELRrANSgsASDrprsiVAVVDPARDGLHPDVIKAIRSTKEiQRLVYVSCNPTgSLVNDTANLCcppskkYRGlpFKPTRAQPVDMFPLTPHCE 701
                 566899***********************************98887776554432222899***********876543478**********************986422222267*******9997654313221133333333568****************99875379********538********9555432246667889*************87 PP

>> TIGR02085  meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.038        14      91     143 ..     321     373 ..     305     379 .. 0.86
   2 !   43.2   0.0   1.5e-14   5.5e-12     195     370 ..     494     704 ..     487     708 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.038
   TIGR02085  91 pasfeevlavlkdfiaraGltpynvakkkGelkyillteseasgklmlrfvlr 143
                 p ++ ++  +++ f+  + l py+   ++G  + i +  se +g++m+  v  
  MMETSP1061-20121228|3657_1 321 PDEVCAIADLIDGFLPDSPLLPYENGVHRGFWRSITIRSSERTGQVMIIVVHA 373
                 667778888899999********************************988765 PP

  == domain 2    score: 43.2 bits;  conditional E-value: 1.5e-14
   TIGR02085 195 aerfndvplfirpksffqtnpkvaaqlyatarqwvrelev....kelwdlfcGvGGfglhcaapdi..kltGieieseaiaaakrsakelGl..e....nlsfaaldsakfa.....eaka....dvpe..lvlvnpprrGiGkelsdyle.qlapkfilysscnaq.tmakdiaelas..........ykilrvqlfdmfphtshyevlt 370
                  e++ +    i p +ffq   + a+ ly    + ++e+      + ++d+ cG G +glhc ++ +  k+ Gi+i+  ai  a   a   G   e    + +f a  +  ++     +a++    d p   + +v+p r G+  ++ + +  + + + ++y scn++ +++ d a+l +          +k+ r q  dmfp t h e+++
  MMETSP1061-20121228|3657_1 494 EEKLGKNTYQISPGAFFQVTTAGAEILYNVVADRLKEVGTdpgnTLMFDVCCGTGTIGLHCISEGVvgKVVGIDISEPAIDDALANAIRNGYgdEeskgKTRFVASRAELVMgqelrRANSgsasDRPRsiVAVVDPARDGLHPDVIKAIRsTKEIQRLVYVSCNPTgSLVNDTANLCCppskkyrglpFKPTRAQPVDMFPLTPHCEMVM 704
                 566666777899*******************999999865222267****************7765449********99988877776665422212124556554443322111112221112255653245799*******9998877515567899******97479*******987777766677899***************9875 PP

>> TIGR02143  trmA_only: tRNA (uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   3.3e-10   1.2e-07     150     320 ..     489     668 ..     480     708 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 3.3e-10
   TIGR02143 150 dkdyveeklkvagrelvyrqvensftqPnaavnekmleWalevleeskgd.....llelycGnGnfslalae..kfekvlateiakssveaaqanieankidnvq...iirlsaeeltealkkkrefrrlk.gidlksyefetifvdPPraGldketvklvk...kyerilyiscnPe.tlkenle 320
                 +  y+eekl     + +y+   ++f q  +a +e + + + + l+e   d     ++++ cG G   l   +   + kv+  +i+ ++++ a+an   n   + +     r+ a      +   +e+rr + g + ++ +    +vdP r Gl ++++k ++   + +r++y+scnP+  l ++ +
  MMETSP1061-20121228|3657_1 489 GSKYIEEKLG----KNTYQISPGAFFQVTTAGAEILYNVVADRLKEVGTDpgntlMFDVCCGTGTIGLHCISegVVGKVVGIDISEPAIDDALANAIRNGYGDEEskgKTRFVASRAELVM--GQELRRANsGSASDRPRSIVAVVDPARDGLHPDVIKAIRstkEIQRLVYVSCNPTgSLVNDTA 668
                 5566677664....457999999****99999999999999988887766555546799*******99754412578*******************9999866541125677776655555..45778887466666666667789************998622257889*******733555444 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.6e-09   9.6e-07      76     137 ..     520     585 ..     475     602 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.6e-09
   TIGR03534  76 Lveaaleel....kkke.klkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlgl 137
                 L + + ++l    + ++ ++ ++D+++G+G+I+l   +e    kv+++Dise A++ a +Na r+g 
  MMETSP1061-20121228|3657_1 520 LYNVVADRLkevgT-DPgNTLMFDVCCGTGTIGLHCISEGVVGKVVGIDISEPAIDDALANAIRNGY 585
                 55555555532232.22467899***************************************99886 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.7e-07   6.3e-05     102     163 ..     524     585 ..     518     595 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.7e-07
   TIGR00536 102 vekaleslisqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkl 163
                 v ++l+++   +    + D+++G+G I+l + +e    +v ++Dis+ a+  a +Na +++ 
  MMETSP1061-20121228|3657_1 524 VADRLKEVGTDPGNTLMFDVCCGTGTIGLHCISEGVVGKVVGIDISEPAIDDALANAIRNGY 585
                 666777777778778899**************************************999876 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.4e-05    0.0053      15      70 ..     531     587 ..     522     600 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.4e-05
   TIGR02469  15 Lrlkkgd.vllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsn 70 
                 +   +g+  + D+ +GtG++++        g+v++i+ +e a++   +N+ r+g+ +
  MMETSP1061-20121228|3657_1 531 VGTDPGNtLMFDVCCGTGTIGLHCISEGVVGKVVGIDISEPAIDDALANAIRNGYGD 587
                 55566675789**************99999**************9999999988765 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.3e-05    0.0048      40      78 ..     537     576 ..     522     602 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-05
   TIGR01934  40 eekvlDvatGtGdlaielakkae.akvtgvDlseemLeva 78 
                 ++ + Dv++GtG + +++  +    kv+g+D+se  ++ a
  MMETSP1061-20121228|3657_1 537 NTLMFDVCCGTGTIGLHCISEGVvGKVVGIDISEPAIDDA 576
                 44568**********998887778*********9876655 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.9e-05    0.0073     107     167 ..     522     582 ..     517     591 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.9e-05
   TIGR03533 107 elieeefapllekeevkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeeniee 167
                 ++++++++++ ++   + ++d+c+G+G +++ + ++    +v  +Dise a++ a +n  +
  MMETSP1061-20121228|3657_1 522 NVVADRLKEVGTDPGNTLMFDVCCGTGTIGLHCISEGVVGKVVGIDISEPAIDDALANAIR 582
                 55666666666555667789*******************************9999888655 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1     3e-05     0.011     162     209 ..     539     587 ..     526     601 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3e-05
   TIGR00406 162 kviDvGcGSGiLsiaalklga.akvvavDiDplavesarkNlelNqvsd 209
                  + Dv cG G +++  +  g+  kvv++Di   a+++a+ N+ +N+  d
  MMETSP1061-20121228|3657_1 539 LMFDVCCGTGTIGLHCISEGVvGKVVGIDISEPAIDDALANAIRNGYGD 587
                 468************999996369********************98665 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   5.5e-05     0.021      46     108 ..     526     597 ..     511     607 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.5e-05
   TIGR02021  46 ewlpkd.slkGkk.vlDAGCGtGllsielAkrGa..ivkavDiseklvela.....rkraekedeaenveFe 108
                 ++l++  +  G++ + D  CGtG +  +   +G   +v+++Dise  ++ a     r+ + +e+++++ +F+
  MMETSP1061-20121228|3657_1 526 DRLKEVgTDPGNTlMFDVCCGTGTIGLHCISEGVvgKVVGIDISEPAIDDAlanaiRNGYGDEESKGKTRFV 597
                 4444443335655157*****************7557*******9888766111114445555555666665 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00015     0.057      39      81 ..     529     571 ..     522     581 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00015
   TIGR02752  39 krmnvqkgkk.aldvccgtadwaialaeavgkegevkgldfsen 81 
                 k++  + g++  +dvccgt+   +    + g  g+v+g+d+se 
  MMETSP1061-20121228|3657_1 529 KEVGTDPGNTlMFDVCCGTGTIGLHCI-SEGVVGKVVGIDISEP 571
                 5555556655257*******9988654.34889*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (754 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.51
# Mc/sec: 1951.37
//
Query:       MMETSP1061-20121228|3664_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 619.77
//
Query:       MMETSP1061-20121228|3661_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.63
# Mc/sec: 894.59
//
Query:       MMETSP1061-20121228|3660_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 2277.75
//
Query:       MMETSP1061-20121228|3671_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.079    9.5   6.5      0.089    9.3   4.5    1.0  1  TIGR01817 nifA: Nif-specific regulatory protein
       0.11   10.6   9.5        0.1   10.7   6.6    1.1  1  TIGR00621 ssb: single-stranded DNA-binding protein
       0.38    8.2  14.3       0.43    8.0   9.9    1.1  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
        2.6    5.0  23.2        3.1    4.8  16.1    1.1  1  TIGR02794 tolA_full: protein TolA
        3.7    3.5  12.7        4.1    3.3   8.8    1.0  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR01817  nifA: Nif-specific regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.5   0.00011     0.089     144     191 ..      41      87 ..      26      94 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00011
   TIGR01817 144 fLemvanlvaqtvrlhrlvaaererllaekeqeekelrdkeaeaaeer 191
                 +++   n++aqt+  +++ ++e+e++ +++ q +++l+++++++++++
  MMETSP1061-20121228|3671_1  41 LISSLGNVLAQTIENEQKQKQEQEQERQQQLQ-QQQLQQQQQQQQQQQ 87 
                 677889*******9777766555554444433.333444333333333 PP

>> TIGR00621  ssb: single-stranded DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   6.6   0.00013       0.1     109     152 ..      47      87 ..      11      95 .] 0.41

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00013
   TIGR00621 109 dlsakaqggekelneesgesqqqapqesqqeaqatgkekassap 152
                 +++  aq+ e+e++++++++q+++ q +qq+ q+++++ +++++
  MMETSP1061-20121228|3671_1  47 NVL--AQTIENEQKQKQEQEQERQQQLQQQQLQQQQQQ-QQQQQ 87 
                 333..333333333333332111111111111111111.11111 PP

>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   9.9   0.00053      0.43      70     113 ..      46      89 ..      35      95 .] 0.61

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00053
   TIGR03789  70 Ggligqavandealkqaqseiakqeqqlvaltekqqaleqleae 113
                 G +++q++ n+++ kq+q++ ++q+ q ++l+++qq+ +q++ +
  MMETSP1061-20121228|3671_1  46 GNVLAQTIENEQKQKQEQEQERQQQLQQQQLQQQQQQQQQQQLQ 89 
                 67777788777766666666666665555555555555554433 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  16.1    0.0037       3.1      83     119 ..      54      90 ..      45      95 .] 0.69

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0037
   TIGR02794  83 aeeakkkqaaeqarqkelekqraaaekaakkaeeaak 119
                 + e+k+kq++eq+rq++l++q+++++++++++++ ++
  MMETSP1061-20121228|3671_1  54 ENEQKQKQEQEQERQQQLQQQQLQQQQQQQQQQQLQR 90 
                 4577889999999999998888888886664444333 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   8.8     0.005       4.1     515     558 ..      47      91 ..      38      95 .] 0.56

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.005
   TIGR01069 515 kviekleekekeleekae.elekllkeleklkkeleqkakelker 558
                 +v+++ +e+e+++++++e e ++ l+++++++++ +q+ ++l+ +
  MMETSP1061-20121228|3671_1  47 NVLAQTIENEQKQKQEQEqERQQQLQQQQLQQQQQQQQQQQLQRA 91 
                 455555554444444433145666677777766666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1064  (0.259386); expected 82.0 (0.02)
Passed bias filter:                      523  (0.127499); expected 82.0 (0.02)
Passed Vit filter:                       103  (0.0251097); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.23s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 348.30
//
Query:       MMETSP1061-20121228|3670_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 2217.42
//
Query:       MMETSP1061-20121228|3662_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   11.1   0.0      0.075   10.1   0.0    1.5  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY


Domain annotation for each model (and alignments):
>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   1.8e-05     0.075      68      96 ..     171     201 ..     113     216 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.8e-05
   TIGR00064  68 lel..kelkeekkpnvillvGvNGvGKTtti 96 
                 ++   + ++ e+k   +l++GvNG+ KTt++
  MMETSP1061-20121228|3662_1 171 DNAsrSDRSPEQKSWAVLVTGVNGIRKTTSM 201
                 22244556778889999************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1879.84
//
Query:       MMETSP1061-20121228|3669_1  [L=818]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.8e-133  440.9   0.0   5.2e-103  342.9   0.0    2.6  2  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   2.2e-123  410.3   0.0    9.5e-96  319.3   0.0    2.4  2  TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
    5.5e-84  280.6   0.0    7.8e-84  280.1   0.0    1.2  1  TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme
    3.9e-75  251.4   0.0    9.4e-75  250.1   0.0    1.7  1  TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO
    1.2e-60  203.2   0.0      1e-59  200.2   0.0    2.0  1  TIGR01578 MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
    1.7e-21   74.4   0.0    3.4e-21   73.3   0.0    1.4  1  TIGR04014 B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
    6.3e-15   52.7   0.0      1e-14   52.0   0.0    1.3  1  TIGR04013 B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
    1.4e-07   28.6   0.0    5.7e-07   26.6   0.0    1.8  1  TIGR03471 HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
    4.8e-07   26.5   0.0    0.00016   18.1   0.0    2.1  2  TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ
    1.7e-06   25.0   0.5      7e-06   22.9   0.4    1.8  1  TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW
    1.9e-05   21.5   0.0    2.9e-05   20.9   0.0    1.2  1  TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase
      2e-05   21.7   0.0    3.7e-05   20.8   0.0    1.4  1  TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family
    9.6e-05   19.5   0.0    0.00016   18.8   0.0    1.3  1  TIGR04167 rSAM_SeCys: radical SAM/Cys-rich domain protein
    0.00033   17.7   0.1    0.00076   16.5   0.0    1.6  1  TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
  ------ inclusion threshold ------
      0.012   11.9   0.0      0.018   11.4   0.0    1.2  1  TIGR03960 rSAM_fuse_unch: radical SAM family uncharacterized protein
      0.017   11.8   0.0      0.027   11.2   0.0    1.2  1  TIGR03977 rSAM_paired_2: His-Xaa-Ser system radical SAM maturase HsxC


Domain annotation for each model (and alignments):
>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0   3.3e-30   8.5e-28       1     122 [.     307     439 ..     307     469 .. 0.85
   2 !  342.9   0.0    2e-105  5.2e-103     134     429 .]     506     812 ..     466     812 .. 0.94

  Alignments for each domain:
  == domain 1    score: 95.1 bits;  conditional E-value: 3.3e-30
   TIGR00089   1 kvyietyGCqmNeadsevmaglLke.ag...yevtedeeeADvviiNTCavrekaeekviselkelaklkkk........akivvaGClaqkekeellkekpevdivlgtqeverllelieeaeekekevveel 122
                 +++i+t GCqmN+adse+++g+L++  g   +   +d+++ADv+i+NTC++r++ae+k+++ l+ ++ +k++        + ++v+GC+aq+e++ ll+++pe+d+vlg+q v  l +++e++e +++ vv+  
  MMETSP1061-20121228|3669_1 307 TYAIQTNGCQMNVADSERLEGILQDeLGlmpISDRKDINTADVIIFNTCSIRDHAEQKLYDALGPFRARKRQksgegnsdFALIVTGCVAQQEGKALLRKIPEIDVVLGPQYVPYLGSVLEQIEWGHQLVVT-A 439
                 689********************99756222345678899**************************999998899***999******************************************997555444.2 PP

  == domain 2    score: 342.9 bits;  conditional E-value: 2e-105
   TIGR00089 134 rseeklrafikiqeGCdkkCtyCivpsaRGrerSrslekileevkelvsk.gvkEivLlgqnvnaYGkdlegkskladLlkelekiegierirvtslhpkdvtdelieliaeeekvlkflhlplQsgsdeiLkrMrRkytreeyleiveklrakvpdvalstdiIVGFPgEteedFeetldlveevkfdklhvfkYspregtpaaelkdq...........vpeevkkeRlerLkelqkeiskeknkkyvGktlevLveeeekkkegelsgrtennklvvvegkeekeligkfvkvkikeakeesllg 429
                  + +++ra++++++GC+++CtyC+vp +RG e+Srs+e+il+e  +lv++ g+kEi+Llgqn++aYG+d+  k+++adLl+ l++     r+r++++hp+ ++d++i+++a+ +kv++ +h+p+Q g++++LkrMrR+y+ e+y++i++k+ra+ pd+a+++d+IVGFPgEte++F++tldl+e vkfd+l++f Yspr++t+aa+++d+           vpe+vkkeRl r++el+ +   e++++y+G+t+evLve+++ +k+g+++grt++ + v++ g+  ++l g++v+v+i+ea+++sl+g
  MMETSP1061-20121228|3669_1 506 IRGHSVRAWVNVIYGCNEHCTYCVVPATRGMEQSRSMESILQECLDLVENrGYKEITLLGQNIDAYGRDMVPKRTFADLLHYLNANLPLTRLRYVTSHPRYFSDRVIDAVASLDKVCECFHMPFQAGDNDVLKRMRRGYSFESYMKIIDKIRAASPDAAITADVIVGFPGETEAAFQRTLDLMEAVKFDNLNSFAYSPRPNTEAATWTDDddddeskerfvVPEDVKKERLARVQELAVRHGLERSQRYLGRTVEVLVEDKNPRKPGQVMGRTRQGRQVFFDGD-IDTLKGELVDVEITEARTWSLMG 812
                 334789*****************************************97549*********************************888***********************************************************************************************************************98666677777788*************************************************************96.6899****************997 PP

>> TIGR01574  miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   4.1e-28   1.1e-25       2     119 ..     308     434 ..     307     456 .. 0.86
   2 !  319.3   0.0   3.7e-98   9.5e-96     136     435 ..     503     813 ..     484     814 .. 0.93

  Alignments for each domain:
  == domain 1    score: 88.4 bits;  conditional E-value: 4.1e-28
   TIGR01574   2 lfiktyGCqmnvadsekmadlllak.gy...eltedveeadvlllntCsvrekaeekvfgelGrfkklkkk.....nadliiGvcGCvaselgekilkrapyvdlvlGtrniarleelieekltdke 119
                 + i+t GCqmnvadse+++++l+ + g    +  +d+++adv++ ntCs+r +ae+k+++ lG f++ k++     n+d+ + v+GCva+++g+ +l++ p +d+vlG++ +  l  ++e+    ++
  MMETSP1061-20121228|3669_1 308 YAIQTNGCQMNVADSERLEGILQDElGLmpiSDRKDINTADVIIFNTCSIRDHAEQKLYDALGPFRARKRQksgegNSDFALIVTGCVAQQEGKALLRKIPEIDVVLGPQYVPYLGSVLEQIEWGHQ 434
                 78********************99888622246789******************************99976333335789999***************************99999888887665555 PP

  == domain 2    score: 319.3 bits;  conditional E-value: 3.7e-98
   TIGR01574 136 aevrnegkiksfvnimeGCdkfCtyCivPytrGeeisrdlddilqevaklae.kGvkeitLLGqnvnayrGkdfegktvsfadLleelavkddierirftsshPkdldddlievlakesklvkllhlPvqsGssevLklmkrsytreeylelvrklkeavPnvslstdiivgfPgeteedfeetldllrevefdsafsfkyskregtpaadmkdd...........vpeevkkerLqrlqalvneialkkvkkregktlkvLveeesrnnpeelaGrteknklvnleGkkd.liGkfvdvkikevktrsLrge 435
                 a++    +++++vn+++GC+++CtyC+vP trG e sr+++ ilqe   l+e +G+keitLLGqn++ay G+d+   + +fadLl+ l++   + r+r+++shP+ ++d++i+ +a   k+++  h+P q G ++vLk+m+r+y  e y++++ k+++a P++++++d+ivgfPgete  f++tldl++ v+fd+  sf ys+r+ t+aa+ +dd           vpe+vkkerL r+q+l     l+++++++g+t++vLve+++ ++p +++Grt +++ v ++G  d l G +vdv+i+e++t+sL g+
  MMETSP1061-20121228|3669_1 503 AKPIRGHSVRAWVNVIYGCNEHCTYCVVPATRGMEQSRSMESILQECLDLVEnRGYKEITLLGQNIDAY-GRDMVP-KRTFADLLHYLNANLPLTRLRYVTSHPRYFSDRVIDAVASLDKVCECFHMPFQAGDNDVLKRMRRGYSFESYMKIIDKIRAASPDAAITADVIVGFPGETEAAFQRTLDLMEAVKFDNLNSFAYSPRPNTEAATWTDDddddeskerfvVPEDVKKERLARVQELAVRHGLERSQRYLGRTVEVLVEDKNPRKPGQVMGRTRQGRQVFFDGDIDtLKGELVDVEITEARTWSLMGK 813
                 444444679*************************************98776538***************.***965.579**********************************************************************************************************************************9987655666777777999**************************************************************666****************986 PP

>> TIGR01579  MiaB-like-C: MiaB-like tRNA modifying enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  280.1   0.0     3e-86   7.8e-84       1     415 [.     310     801 ..     310     802 .. 0.87

  Alignments for each domain:
  == domain 1    score: 280.1 bits;  conditional E-value: 3e-86
   TIGR01579   1 ietlGCrvNqyeseslkaeliqk.gyevvrddek...adviiiNtCtVTakadskarkli...rrlkre......npkakiivtGCyaqlepkel.aelkevvlvlgnkeKdkiskllsall.................................esavrvkekslveekeveefeevapr................feek.trafvkvqdGCnkaCsyCiIpfaRGrsrSvelekvleqvkalva.kgykEvvltGvnlssYgedlenglslakLlekilkieglkriRlsSlepeevdeelleliasekklcphlHlslQsgsdkvLkrmrRkytrddilklveklrsvrpelalgtDiIvgfPgEteedfqetlrlvkelelsklHiFpySaRegTkaaamda...........kveetiakeRvkalkelaekvkqevlkkllgkelevlvekskaee..vltgkseeylkvkvesekkvaagellkvr 415
                 i+t GC++N  +se l+  l+ + g+  ++d +    advii+NtC++  +a++k   ++   r ++++      n +   ivtGC+aq+e k l  +++e+++vlg ++   + ++l++++                                 ++++ v+ +s+++ ++ + + +++++                ++++ +ra+v v  GCn+ C+yC++p++RG  +S+++e++l++   lv+ +gykE+ l G n+ +Yg+d+  ++++a+Ll+ +++   l+r+R    +p    +++++++as  k+c+ +H+  Q+g+++vLkrmrR+y+ + ++k+++k+r+ +p+ a+++D+IvgfPgEte++fq+tl+l++ +++ +l  F yS+R++T+aa+  +            v+e ++keR+++++ela +   e  +++lg++ evlve ++ ++   ++g++ +  +v ++++ ++  gel+ v+
  MMETSP1061-20121228|3669_1 310 IQTNGCQMNVADSERLEGILQDElGLMPISDRKDintADVIIFNTCSIRDHAEQKLYDALgpfR-ARKRqksgegNSDFALIVTGCVAQQEGKALlRKIPEIDVVLGPQYVPYLGSVLEQIEwghqlvvtaptiiadnykaagatsssvelsttsKNTETVQSSSVLSASASPPTMTATNHlpridlpenddfsakpIRGHsVRAWVNVIYGCNEHCTYCVVPATRGMEQSRSMESILQECLDLVEnRGYKEITLLGQNIDAYGRDMVPKRTFADLLHYLNANLPLTRLRYVTSHPRYFSDRVIDAVASLDKVCECFHMPFQAGDNDVLKRMRRGYSFESYMKIIDKIRAASPDAAITADVIVGFPGETEAAFQRTLDLMEAVKFDNLNSFAYSPRPNTEAATWTDdddddeskerfVVPEDVKKERLARVQELAVRHGLERSQRYLGRTVEVLVEDKNPRKpgQVMGRTRQGRQVFFDGDIDTLKGELVDVE 801
                 7899***********9986654337777766554677******************998874432.222212233367889**********988752689*******************9999*********************999999999988555556666666666666666655557779999999999999776626*************************************988775279******************999************************************************************************************************************************************98655666777777789*************************************9987654477787777777777777666777777766 PP

>> TIGR01125  TIGR01125: ribosomal protein S12 methylthiotransferase RimO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.1   0.0   3.7e-77   9.4e-75       4     432 .]     310     812 ..     307     812 .. 0.89

  Alignments for each domain:
  == domain 1    score: 250.1 bits;  conditional E-value: 3.7e-77
   TIGR01125   4 ivsLGCpknlvDsevllgkLrea.Gy...evvaevedaDvvivntCafiedakeesleailellda..........kkkvivtGClverykeelkeeipevkallGsedveeileaieelesgkdkvaekslieeee........................................................vkrvkltprhyaYlkvaeGCnkrCafCiiPklrGklrsrkieeilkeakrLvd.egvkeiiliaqdttaYGvDlktdreaklaeLlekLekleikWirllYl..yPdelvdevielmaesekvlpYlDiPlqhasdkiLklmrrpksaekqldlieklrekvpelvlrstfivGfPgeteedfqeLldfveearldklGvftysdeegtdaaeLpda...........vpeevkeerlerlmalqqrisakkleelvGkklevlidekeeetdleligrtlaeaPevDgvvyvkgakelvkigdilkvkieetdeYDlvG 432
                 i++ GC+ n +Dse+l g+L+++ G       ++++ aDv+i ntC+  ++a++   +a++ +             +  +ivtGC++++    l ++ipe++ +lG++ v  + +++e+ e g++ v + ++i  ++                                                        +k ++  +   a++ v  GCn++C++C++P  rG ++sr++e+il+e  +Lv+ +g kei l+ q++ aYG D+    + ++a+Ll+ L+      +rl Y+  +P   +d+vi+++a+ +kv + + +P+q  ++++Lk mrr++s e+  ++i+k+r++ p++ + + +ivGfPgete  fq+ ld +e  ++d+l  f ys+  +t+aa   d+           vpe+vk+erl+r+ +l+ r   ++ ++ +G+++evl+++k++ +  +++grt +       +v+ +g +  +  g+++ v+i+e+  + l+G
  MMETSP1061-20121228|3669_1 310 IQTNGCQMNVADSERLEGILQDElGLmpiSDRKDINTADVIIFNTCSIRDHAEQKLYDALGPFRARkrqksgegnsDFALIVTGCVAQQEGKALLRKIPEIDVVLGPQYVPYLGSVLEQIEWGHQLVVTAPTIIADNykaagatsssvelsttskntetvqsssvlsasaspptmtatnhlpridlpenddfsAKPIR-GHSVRAWVNVIYGCNEHCTYCVVPATRGMEQSRSMESILQECLDLVEnRGYKEITLLGQNIDAYGRDMV--PKRTFADLLHYLNANL-PLTRLRYVtsHPRYFSDRVIDAVASLDKVCECFHMPFQAGDNDVLKRMRRGYSFESYMKIIDKIRAASPDAAITADVIVGFPGETEAAFQRTLDLMEAVKFDNLNSFAYSPRPNTEAATWTDDddddeskerfvVPEDVKKERLARVQELAVRHGLERSQRYLGRTVEVLVEDKNPRKPGQVMGRTRQG-----RQVFFDG-DIDTLKGELVDVEITEARTWSLMG 812
                 6778****************98756411144578899***********************9997766778888766678**********99******************9998888888888877777666666655699*********************************************9999987544444.45667****************************************96269*******************..8999********8654.46788887559**********************************************************************************************************987663334445556669*******************************************999****9864.....5788888.445577999999999999988887 PP

>> TIGR01578  MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.2   0.0     4e-62     1e-59       4     419 ..     310     813 ..     306     815 .. 0.84

  Alignments for each domain:
  == domain 1    score: 200.2 bits;  conditional E-value: 4e-62
   TIGR01578   4 vetyGCalnkadseiiknklkka.Gyelve...kaeeAdlailntCtVkkktEdkl.......larikelarkgk...evvvagcvpkaqkekvkdaeselev.lgvkaierlvelveetlk........................................................kkvlersvaktllkevkvlkneli.eiipinqGClskCsyCitkiArGklaSyppEkivekarelv.aeGakeikltsqDtaaYGkDiGer..LpeLlrliteiegefrlRVGmmnpknvleildelievfqs.ekvykfLHlPvqSgsdsvLkemkReytvddfedivekfrerledltlstDiivGfptEtdddfeetlellrklrpekinvtkfspRpgteaaklkr............ldakikkkrskaltklkeevllekkenliGkrekVlvte...egvGevlkdeddatvqvvis.ekeleigefakveitgaktaylige 419
                 ++t GC +n adse +++ l+++ G   ++     + Ad++i ntC ++ ++E+kl       +ar ++ + +g+    ++v+gcv++++ ++   + +e++v lg + ++ l+ ++e+++                                                         ++  + + +++   ++k+++   +   +++  GC+++C+yC++   rG  +S+  E i ++   lv ++G kei l +q+  aYG+D+  +   ++Ll+ ++      rlR    +p +     d +i++ +s +kv +  H+P q+g+++vLk+m+R y  + + +i++k+r++ +d +++ D+ivGfp+Et+  f++tl+l++ ++++++n   +spRp+teaa   +            ++  +kk+r  ++++l     le  + ++G++++Vlv +    + G+v+ ++++ + qv    + +  +ge  +veit+a+t +l+g+
  MMETSP1061-20121228|3669_1 310 IQTNGCQMNVADSERLEGILQDElGLMPISdrkDINTADVIIFNTCSIRDHAEQKLydalgpfRARKRQKSGEGNsdfALIVTGCVAQQEGKALLRKIPEIDVvLGPQYVPYLGSVLEQIEWghqlvvtaptiiadnykaagatsssvelsttskntetvqsssvlsasaspptmtatNHLPRIDLPENDDFSAKPIRGHSVrAWVNVIYGCNEHCTYCVVPATRGMEQSRSMESILQECLDLVeNRGYKEITLLGQNIDAYGRDMVPKrtFADLLHYLNANLPLTRLRYVTSHPRYF---SDRVIDAVASlDKVCECFHMPFQAGDNDVLKRMRRGYSFESYMKIIDKIRAASPDAAITADVIVGFPGETEAAFQRTLDLMEAVKFDNLNSFAYSPRPNTEAATWTDdddddeskerfvVPEDVKKERLARVQELAVRHGLERSQRYLGRTVEVLVEDknpRKPGQVMGRTRQGR-QVFFDgDIDTLKGELVDVEITEARTWSLMGK 813
                 7899****************97449887774445678*****************98222222233333333333322369**************999999985278999**********999999***********************************************9866542222333333333344555544441568999*********************************99458******************9766589*****998888899*********996...57889999988*******************************************************************************************97643111222222333567788889999999999999*****************9888889*****999988.76655156799****************9987 PP

>> TIGR04014  B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   1.3e-23   3.4e-21     148     364 ..     498     719 ..     453     749 .. 0.83

  Alignments for each domain:
  == domain 1    score: 73.3 bits;  conditional E-value: 1.3e-23
   TIGR04014 148 PkdisrqdvrGanv..yiethrGclGactfcqvPrffGrrirsreleeiveevkel.krkGarrlaisGGtgslygskeaidkeafiellkklsevlGkknlsvPdirvdlvddeileairey..tiGWvffGiesGsdrilrlmkkGitvdkvleavelarevg..vkvaGsfivgyPgeteedyeatkdlleelelddvfvsiaePiPgtelaelvlelped 364
                  +d s++ +rG +v  +++   Gc  +ct+c vP   G + +sr++e+i++e  +l +++G + +++ G     yg +  + k  f +ll+ l   l    l        + +d++++a+           +  ++G + +l+ m++G + +  ++ +++ r  +    ++   ivg+Pgete  +++t dl+e++++d++      P P te a    + ++d
  MMETSP1061-20121228|3669_1 498 NDDFSAKPIRGHSVraWVNVIYGCNEHCTYCVVPATRGME-QSRSMESILQECLDLvENRGYKEITLLGQNIDAYGRDM-VPKRTFADLLHYLNANLPLTRLRYVTSHPRYFSDRVIDAVASLdkVCECFHMPFQAGDNDVLKRMRRGYSFESYMKIIDKIRAASpdAAITADVIVGFPGETEAAFQRTLDLMEAVKFDNLNSFAYSPRPNTEAATWTDDDDDD 719
                 379********9864489*******************987.8**********99873678****************987.9*************9999999999999999**********87511445556789*************************99987511667789**************************99888889*****998776655555 PP

>> TIGR04013  B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   3.9e-17     1e-14     148     356 ..     509     712 ..     459     726 .. 0.78

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 3.9e-17
   TIGR04013 148 lklfgpiEitRGCpygCayCqtprlfgkkvRHRsiesivkya.kelvdkgrkdiRfitpnalaYGskdgvkpnlekveeLLsslkk..kkkkriffGtFPsevRPefvteealelikkyvanrrlviGaQsgsdrvLkaikRgHtvedvveavelalea..gltpvvDfIlGlPgeteedqeatlelikklvkkgakvhaHtfmpLPgtplena 356
                 +++ + + +  GC   C+yC +p   g++   Rs+esi++ +   ++++g k+i ++  n  aYG  d   +  +    LL+ l+     ++  ++ + P     + v  +a++ ++k ++    ++  Q+g++ vLk+++Rg + e+ ++ +++++ a  +   + D+I+G+Pgete   ++tl+l++ +   +       + p P t+ ++ 
  MMETSP1061-20121228|3669_1 509 HSVRAWVNVIYGCNEHCTYCVVPATRGME-QSRSMESILQEClDLVENRGYKEITLLGQNIDAYGR-DM--VPKRTFADLLHYLNAnlPLTRLRYVTSHPRYFS-DRVI-DAVASLDKVCE--CFHMPFQAGDNDVLKRMRRGYSFESYMKIIDKIRAAspDAAITADVIVGFPGETEAAFQRTLDLMEAVKFDN--LNSFAYSPRPNTEAATW 712
                 56778899999**************9995.78******986615566779****************.44..445678889999988744556668888887654.3443.56667788886..577888*************************9877623678888*********************9986554..77888888888876665 PP

>> TIGR03471  HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.2e-09   5.7e-07     204     383 ..     519     709 ..     512     730 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.2e-09
   TIGR03471 204 rGckskctfclwPqtvgGhkyrtrsaesvieevklakelf..pevkelffdddtftddkeraeeiakklkklgvtwscnakanv....dyetlkvlk.....enGlrlllvGyesGdqqilknikkGlkvevarkftkdckklG..lkvhGtfilGlPgetretirktiefakeldpetiqvslaapyPGtel 383
                  Gc+ +ct+c+ P t g ++   rs es+ +e    +e+    e+  l  + d++  d    +  a  l+ l+    ++    v     y + +v+      ++ +  + + +++Gd+++lk +++G   e   k  ++ +      ++  + i+G+Pget+ + ++t++   +++ + ++    +p P te 
  MMETSP1061-20121228|3669_1 519 YGCNEHCTYCVVPATRGMEQ--SRSMESILQECLDLVENRgyKEITLLGQNIDAYGRDMVPKRTFADLLHYLNANLPLTRLRYVtshpRYFSDRVIDavaslDKVCECFHMPFQAGDNDVLKRMRRGYSFESYMKIIDKIRAASpdAAITADVIVGFPGETEAAFQRTLDLMEAVKFDNLNSFAYSPRPNTEA 709
                 59*************99776..6799******98888774226666677788999999888888888888887665554322210111333333333111224568888899************************9999876422899***************************99999888899999986 PP

>> TIGR03904  SAM_YgiQ: uncharacterized radical SAM protein YgiQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   6.3e-07   0.00016     292     342 ..     510     559 ..     448     567 .. 0.91
   2 !    6.1   0.0    0.0028      0.72     447     553 ..     634     737 ..     628     741 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 6.3e-07
   TIGR03904 292 eikfsvtshrGCfGgCsFCaiteHqgriiqsRseesileEvekltkkpefk 342
                 +++  v++  GC  +C++C + + +g   qsRs esil+E  +l++++++k
  MMETSP1061-20121228|3669_1 510 SVRAWVNVIYGCNEHCTYCVVPATRGME-QSRSMESILQECLDLVENRGYK 559
                 689999******************9965.9***************999998 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0028
   TIGR03904 447 dkvlklmkKpgievyekfkekfeklskkagkkqylvpylisahPgctledmvelaeylkklklkpeqvqdftPtPmtlstamyytgldpltkekvyvaksekekklq 553
                 ++vlk m++    ++e++++  +k+   a+ +  +++ +i ++Pg t++  ++  +++++ k++  +  ++ P P t +++    + d  +ke+ +v+++ k+ +l 
  MMETSP1061-20121228|3669_1 634 NDVLKRMRRG--YSFESYMKIIDKIR-AASPDAAITADVIVGFPGETEAAFQRTLDLMEAVKFDNLNSFAYSPRPNTEAATWTDDDDDDESKERFVVPEDVKKERLA 737
                 5677777765..45777777777774.566778899999**************************9************99988888888889999999887776655 PP

>> TIGR04107  rSAM_HutW: putative heme utilization radical SAM enzyme HutW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.4   2.7e-08     7e-06     105     237 ..     575     708 ..     495     724 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.7e-08
   TIGR04107 105 aLsaedlarlieaireylplapdcEiTlEgRinefddekaeaaleagvnRfSiGvQsfdtevRrrlgRlddreevlerleeLsa.ldraavviDLlyGLpgqteeiweeDleivaelgldGvdlYaLnllpgtp 237
                  + ++  a l++ ++ +lpl+    +T   R ++     a a l+     f +  Q+ d++v +r+ R  + e+ ++ ++++ a   +aa+ +D + G+pg te+ +++ l+ +++++ d ++ +a    p+t+
  MMETSP1061-20121228|3669_1 575 MVPKRTFADLLHYLNANLPLTRLRYVTSHPRYFSDRVIDAVASLDKVCECFHMPFQAGDNDVLKRMRRGYSFESYMKIIDKIRAaSPDAAITADVIVGFPGETEAAFQRTLDLMEAVKFDNLNSFAYSPRPNTE 708
                 45567788999999999999999999999998777777777889999***********************************761568*****************************99999988877766665 PP

>> TIGR00538  hemN: oxygen-independent coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.1e-07   2.9e-05     145     247 ..     603     708 ..     518     725 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.1e-07
   TIGR00538 145 dPrelekevlkalr..deGfnrlslGvqdfdkevqkavnriqpeelikekleklreagfe.sinldliyGlPkqtkesfektlekvlelnPdrlavfnyayvPtvk 247
                  Pr++ + v++a+   d+  + + +  q  d++v k ++r   +e  ++ ++k+r a+ + +i  d+i G+P  t+++f++tl+ +  ++ d l  f+y+  P   
  MMETSP1061-20121228|3669_1 603 HPRYFSDRVIDAVAslDKVCECFHMPFQAGDNDVLKRMRRGYSFESYMKIIDKIRAASPDaAITADVIVGFPGETEAAFQRTLDLMEAVKFDNLNSFAYSPRPNTE 708
                 79999999999986336678899999******************************99873699*******************************99998777665 PP

>> TIGR01212  TIGR01212: radical SAM protein, TIGR01212 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.4e-07   3.7e-05     114     209 ..     600     695 ..     521     701 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.4e-07
   TIGR01212 114 vgtRPDcvpdevldllaeykekgyevwvelGlqtahektlkkinRghdladyveavkkvkkr..gikvcshlivgLPgedreevletakivaeldvdg 209
                 v+  P    d+v+d +a + +        +  q+ ++  lk++ Rg+ +  y++++ k+++   +  + + +ivg Pge+ + +  t++++ +++ d 
  MMETSP1061-20121228|3669_1 600 VTSHPRYFSDRVIDAVASLDKVCE--CFHMPFQAGDNDVLKRMRRGYSFESYMKIIDKIRAAspDAAITADVIVGFPGETEAAFQRTLDLMEAVKFDN 695
                 667888899999999999987744..568999**************************99872257899********************999998876 PP

>> TIGR04167  rSAM_SeCys: radical SAM/Cys-rich domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   6.1e-07   0.00016      11     118 ..     514     620 ..     507     703 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 6.1e-07
   TIGR04167  11 qvnlgklCnlsCkHCHveagpkrteems.kevveeilellkkskiktlDltGGaPelnpefrelveearklgkevivRsnltileeegledlaeflaekkvevvaslPc 118
                 +vn+ + Cn +C+ C v a++  ++  s +++++e+l+l++++ +k + l G   ++    r++v + + ++      +nl +++ + +++ +++++++ ++ vasl  
  MMETSP1061-20121228|3669_1 514 WVNVIYGCNEHCTYCVVPATRGMEQSRSmESILQECLDLVENRGYKEITLLGQ--NIDAYGRDMVPKRTFADLLHYLNANLPLTRLRYVTSHPRYFSDRVIDAVASLDK 620
                 79****************988755544315689*****************996..567777999999999998889999999999999999999999999999999965 PP

>> TIGR03994  rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     3e-06   0.00076     206     272 ..     630     697 ..     514     724 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3e-06
   TIGR03994 206 qtmndktLkliGRkHtvedvveafklarelGfd.ninmDlivGLpgetleeveetleevkklaPeslt 272
                 q+ ++++Lk + R ++ e+ +++ + +r++  d  i  D+ivG pget++ +++tl+ +++++ ++l 
  MMETSP1061-20121228|3669_1 630 QAGDNDVLKRMRRGYSFESYMKIIDKIRAASPDaAITADVIVGFPGETEAAFQRTLDLMEAVKFDNLN 697
                 666789**********************99987369************************99999986 PP

>> TIGR03960  rSAM_fuse_unch: radical SAM family uncharacterized protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     7e-05     0.018     253     339 ..     512     598 ..     497     694 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7e-05
   TIGR03960 253 rvvleilrGcirgcrfcqaGmiyrPlrekslellkelaeellkntGydeislsslsssdyseleelvdalieelkeekvnislPslr 339
                 r+ ++++ Gc   c +c         +++s+e + +   +l++n Gy+ei+l       y +     +++ + l+  + n+ l  lr
  MMETSP1061-20121228|3669_1 512 RAWVNVIYGCNEHCTYCVVPATRGMEQSRSMESILQECLDLVENRGYKEITLLGQNIDAYGRDMVPKRTFADLLHYLNANLPLTRLR 598
                 88899*************9999888899***********************987777666654444445555555555555555555 PP

>> TIGR03977  rSAM_paired_2: His-Xaa-Ser system radical SAM maturase HsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00011     0.027      34     134 ..     520     629 ..     507     658 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00011
   TIGR03977  34 rCnnlClmCsqpp.kkeddswllee.alelikllee.eerelgisG......GEPlllgekllelleeikkklpetelhvLtNG.rafsdkefakelaelakekllvgipl 134
                  Cn+ C  C  p  +  ++s  +e+ ++e+++l+e+   +e+++ G      G  ++ ++++ +ll+ ++ +lp t+l   t   r fsd+ +++++a+l k   ++ +p 
  MMETSP1061-20121228|3669_1 520 GCNEHCTYCVVPAtRGMEQSRSMESiLQECLDLVENrGYKEITLLGqnidayGRDMVPKRTFADLLHYLNANLPLTRLRYVTSHpRYFSDR-VIDAVASLDKVCECFHMPF 629
                 6***********95555555556551567899998756799**999777777889999999*****************9887651556555.5566666666555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.69u 0.15s 00:00:00.84 Elapsed: 00:00:00.63
# Mc/sec: 1713.76
//
Query:       MMETSP1061-20121228|3673_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 1183.78
//
Query:       MMETSP1061-20121228|3676_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    5.8   8.1        1.9    5.3   5.6    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   5.6   0.00047       1.9     397     469 ..      19      91 ..       6     144 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00047
   TIGR01628 397 isgrhqaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgr..rnlnnrnrnv 469
                   +r++ aqqq+ ++q+ +qq +s++++++  q  ++ q+ ++++ ++ +a+ +    q+q++  ++ln+  ++ 
  MMETSP1061-20121228|3676_1  19 REWRPPRAQQQQQHQQQ-QQQSRSNQQHYQPPQLPMTDQRHQQQN-SHYMARPSSSDWQQQPQgeTELNHSVKEF 91 
                 47999666666666554.455566666788555555555555555.44455554444444443225555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 2564.99
//
Query:       MMETSP1061-20121228|3677_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 851.33
//
Query:       MMETSP1061-20121228|3678_1  [L=845]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       370  (0.0901999); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.53
# Mc/sec: 2104.35
//
Query:       MMETSP1061-20121228|3679_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-62  207.9   9.1    8.5e-62  207.4   6.3    1.1  1  TIGR00837 araaP: aromatic amino acid transport protein
    0.00029   17.8   4.1    0.00052   17.0   2.9    1.3  1  TIGR00814 stp: serine transporter
  ------ inclusion threshold ------
        2.7    4.5  15.3       0.12    9.0   5.8    2.0  3  TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family


Domain annotation for each model (and alignments):
>> TIGR00837  araaP: aromatic amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.4   6.3   6.2e-65   8.5e-62       1     362 [.     147     514 ..     147     522 .. 0.88

  Alignments for each domain:
  == domain 1    score: 207.4 bits;  conditional E-value: 6.2e-65
   TIGR00837   1 ggaliiagtviGaGmlalPvstagawfivsllllillwllmllsgllllEvlltyea.....gaslatlakdllGkkgniiaglsllfvlyiLlyAYisaggsilselleeasgialsaraivllftv.llaslvvlstklvdritrvllvgkiiafvlvlvlllpkvktdlLldvakdtsylpyilsalPvlltsFGfhgnvpslvkyldknvkkvkksiliGsaiaLvlYilWqlavlGnlpreeflkiiekggnldglvealqevlkskalelalelFsnlAlisSflgvaLglfdyladlfkfdds....kkgrlktalltflpPlvlalfyPegfllalgyaG.laatiwavilPallawkaRkkkpn 362
                 gga ++agt++GaG+lalP +ta ++fi+s+ ++ + wl m++sgll+ E+  +        g+++ +l +d lGkk+  +  +++  + y Ll+AYi++ggs l++ll     + l+a +  l f+    a+l +++ ++++  +++++ ++ ++f+ ++ +     + + L+d a+  ++ + ++ alP++++s  +h++vp++v+ l+++  k++k+il+G++++ ++++lW+++vl n+        +++      l  a  +  +s +l+ +++ Fs+lA+++S++g   gl+d  +d+f+   +    +k +  ++ l+flpPl l+l  P +f +al+y G  +++ + ++lP +++wk R++  +
  MMETSP1061-20121228|3679_1 147 GGASLVAGTMVGAGILALPAATADVGFIPSTGAMGVGWLYMTMSGLLIAELSINRMGqsgipGQGMLDLYEDALGKKWSKVGSVAYFGLHYCLLVAYIAQGGSNLNSLLGIDA-MGLPAGVPQLAFATtTAAGLYLAKPAAIETANKLFVSILAVVFLGIIGFGAGTADLNALIDPAN--QHPENVVDALPIIFLSLVYHNVVPTVVNQLEGDRSKITKAILYGTSVPTIMFLLWNAVVLSNVGMDGSDGGVTDPVA--LLQSAAASGGSSAILANLVTTFSSLAVVTSLIGFVYGLLDAWTDVFNLPTEgptfEKWKAPLFGLVFLPPLALSLTDPDIFFKALDYGGaFGVSTLFLVLPPIMVWKQRYADDE 514
                 7999**********************************************8776554356788999*****************************************999877.6777777777765415677889999************************************555..788899*********************************************************98876655444332..23346666667788999******************************94432222445666788*************************8889999*************98765 PP

>> TIGR00814  stp: serine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.9   3.8e-07   0.00052      12     311 ..     152     446 ..     148     457 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.8e-07
   TIGR00814  12 lfGtAiGAGvlflPiqaGlkGlwvlllmaiiayplt....ylahralakfvlsskesaeditevveeyfGkkaGilitllYFlaivpilliYsvaitntvesflkkqlvlaa..llrallslvlilvlvaivlfgekllvkimsvlvfplvlillllslylipeWnsavltelpslkgllktvwltipvlvfsfnfspiissfaiskrerykkkelaerkaskilkiaylilvvvvlFfvfs.cvls.lspeelvkAkeqnisiL.sllanllnaalikiaavivaivAilksFlGhYlGakEgleglv 311
                 + Gt +GAG+l lP      G+++   +  + +  +     l+ ++ ++ + +s  +++++ +  e+ +Gkk+ ++ ++ YF   + +l  Y      +    l+  l+++a  l+ ++ +l+  +  +a + + + + +  ++ l f+ +l +++l++   +    ++   ++ +++  ++v+ ++p++++s+++ +++ +++ + +         ++k++k++   y + v +++F     +vls ++ +       + +++L s++a   ++a+++   +  + +A+++s +G  +G  ++ +++ 
  MMETSP1061-20121228|3679_1 152 VAGTMVGAGILALPAATADVGFIPSTGAMGVGWLYMtmsgLLIAELSINRMGQSGIPGQGMLDLYEDALGKKWSKVGSVAYFGLHYCLLVAYIAQGGSN----LNSLLGIDAmgLPAGVPQLAFATTTAAGLYLAKPAAIETANKL-FVSILAVVFLGIIGFGAGTADLNALIDPANQHPENVVDALPIIFLSLVYHNVVPTVVNQLEG-------DRSKITKAI--LYGTSVPTIMFLLWNaVVLSnVGMDGSDGGVTDPVALLqSAAASGGSSAILANLVTTFSSLAVVTSLIGFVYGLLDAWTDVF 446
                 569********************988766666644411123455666777888888999**********************988888887776555555....5555555551145689999999999999999*******99998.5667788899998888887776666677777*********************9887644332.......334555443..345555666666554134442677778888999999994455555669999999999999*************999988875 PP

>> TIGR00905  2A0302: transporter, basic amino acid/polyamine antiporter (APA) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   5.8   8.7e-05      0.12      15      86 ..     149     223 ..     139     261 .. 0.70
   2 ?   -2.5   0.0      0.26   3.6e+02     389     414 ..     286     311 ..     245     317 .. 0.72
   3 ?   -1.4   0.1      0.12   1.7e+02     228     295 ..     357     425 ..     347     465 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 8.7e-05
   TIGR00905  15 talvvgsmiGsGifsLpqnlasva...gagavligWi.itgvGmlalAfvfaklatkkpeldgGvyaYaregfgey 86 
                 + lv+g m+G+Gi+ Lp+  a v+   ++ga+ +gW+ +t  G l+  ++++++++      +G+    + ++g+ 
  MMETSP1061-20121228|3679_1 149 ASLVAGTMVGAGILALPAATADVGfipSTGAMGVGWLyMTMSGLLIAELSINRMGQSGIP-GQGMLDLYEDALGKK 223
                 78***************988887755589*******835666666666777777744333.345555555566655 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.26
   TIGR00905 389 kkknkkalivgviavvysvwllyaag 414
                  ++  ++l+v+++avv+  +  ++ag
  MMETSP1061-20121228|3679_1 286 AIETANKLFVSILAVVFLGIIGFGAG 311
                 36778889999999998655555555 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.12
   TIGR00905 228 ksdvgkAtvlgllsvlviyilitllslGvl.tqqeLaelknpsmaavleavvgkwgavlislgliisvl 295
                 +s++ kA++ g+    ++++l + ++l  +        +++p  +    a  g  +a+l +l + +s l
  MMETSP1061-20121228|3679_1 357 RSKITKAILYGTSVPTIMFLLWNAVVLSNVgMDGSDGGVTDPVALLQSAAASGGSSAILANLVTTFSSL 425
                 677778888888777777777766655443133344566677666666666666666666665554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 2001.24
//
Query:       MMETSP1061-20121228|3681_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|3689_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-10   37.7   5.8    8.7e-10   37.2   4.0    1.3  1  TIGR01571 A_thal_Cys_rich: uncharacterized Cys-rich domain
  ------ inclusion threshold ------
       0.48    6.8   4.6       0.73    6.2   3.2    1.2  1  TIGR00437 feoB: ferrous iron transport protein B
       0.57    6.2  16.2       0.81    5.7  11.2    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        2.5    5.1  20.2       0.21    8.6  10.8    1.4  1  TIGR02794 tolA_full: protein TolA
        9.9    2.3  23.4         15    1.8  16.2    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01571  A_thal_Cys_rich: uncharacterized Cys-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   4.0   1.1e-12   8.7e-10       2     102 ..     287     421 ..     286     424 .. 0.76

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.1e-12
   TIGR01571   2 eWetglldcle..Dislcllglfcpcvlfgkiaerlg.........................tfaeecllaglllililallge..............igllytgavRkklrkkyklqgaice.......DflvhlfcclCalcQevre 102
                  W+t l++c++    s++++glfc+ vl+++  +rlg                         +         +l + +                    ++++ +++vR  +r+ky+++ +          D+ v+l+c +C+  Q++r 
  MMETSP1061-20121228|3689_1 287 TWRTRLFGCCDvlTQSTFWMGLFCTPVLMAQLITRLGltwngregppeetylsynrlvlafvI---------VLGVYC-----IpilgnlcvfiyylvVVVYIGSKVRGYMRNKYEIPSSLPTwcgnrtdDICVMLCCGCCSSIQMARH 421
                 7*********7336789***********************99999998877533332222221.........111222.....12334477778888677888999************965444569999****************996 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.2   0.00089      0.73     154     246 ..     132     223 ..      77     237 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00089
   TIGR00437 154 kaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvkkesesklsateiadeekvlveksigtk 246
                 ++++ +e+ +r        e+ ++++++ k+ + ++  + + ++++ ee+ +e  ++++ ++ + +++s  kl+ ++i+d++   +e++++++
  MMETSP1061-20121228|3689_1 132 EEEEEEEEISRRSSTYSRNEQSQQEEQQRKSRQSQRSDYSRNEQSQQEEQRRESRQSQRSDNSSNQMRST-KLTPANIYDDRSDYTEDTYAKT 223
                 3333333444444444444444455555677777788999999999999999999999999999999988.8999999999866666665544 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  11.2   0.00099      0.81     283     426 ..     119     270 ..      50     292 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00099
   TIGR00934 283 anslaaesdeessesrriqekikrrlstssieknsqqnltrla.ktksfdd....skavrlersktidraeasd..leeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrne.edngnkkdasksneseevsldsee 426
                 + s ++   ++  e    +e+i rr st s++++sqq+ ++++ +++   d    +++++ e+ +  +++++sd   +++ ++k +   ++++ ++ ++++   +k+  + +++ +   + ++d++e  +++++++++k n +++ + dse 
  MMETSP1061-20121228|3689_1 119 QYSQRSMGMDQLPEEEEEEEEISRRSSTYSRNEQSQQEEQQRKsRQSQRSDysrnEQSQQEEQRRESRQSQRSDnsSNQMRSTKLTPANIYDDRSDYTEDTYAKTKEIEQCNTYPAHSLSGDNDEEEdPEERTHIQKPKTNDEDNNDGDSEA 270
                 33333333333333333456666666666666666444333320233333343333333333333333333333113344444444444444444444444444444444444433333333333220333335555555554444444433 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  10.8   0.00025      0.21      22     128 ..      88     192 ..      81     206 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00025
   TIGR02794  22 sltesvepepegg...eiiqAvlvDpaa.vaqqanrlqqqekkaakkepkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaak.kaeeaakekeekkkqa 128
                   +++v+ +p+g+   e  ++ ++Dp++   +q+++ +  + + +++e     +++e++++ + + +  ++ q++eq+r+ ++ +qr     +++ ++ee+++e ++ ++ +
  MMETSP1061-20121228|3689_1  88 DEAHTVDIPPGGVregEEFET-VIDPKRkYHDQYSQRSMGMDQLPEEE-----EEEEEISRRSSTYSRNEQSQQEEQQRKSRQ-SQRSDYSRNEQsQQEEQRRESRQSQRSD 192
                 468899999999556889996.55866626667777666666666666.....556666666666667778888888887777.5555444444447777777777666655 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  16.2     0.018        15      27     118 ..     115     205 ..     110     237 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.018
   TIGR01642  27 RsrdrsrdRdRdrrdr.rrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkp 118
                 + +d+  +R+    +  +    +++ +R+ ++  sr+ +s++e+++r+SR+  +r ++s++ +s+++++ r++ +s+   +++++    ++ p
  MMETSP1061-20121228|3689_1 115 KYHDQYSQRSMGMDQLpEEEEEEEEISRR-SSTYSRNEQSQQEEQQRKSRQS-QRSDYSRNEQSQQEEQRRESRQSQRSDNSSNQMRSTKLTP 205
                 45666666665555330333344444554.555566668999999999*999.5555666666665555555444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.87
# Mc/sec: 676.63
//
Query:       MMETSP1061-20121228|3690_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       545  (0.132862); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.12s 00:00:00.52 Elapsed: 00:00:00.31
# Mc/sec: 1669.02
//
Query:       MMETSP1061-20121228|3691_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.38    8.5   8.2       0.41    8.4   5.7    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
       0.94    4.8  20.5        1.1    4.6  14.2    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   5.7    0.0002      0.41      61     128 ..      15      95 ..       2     172 .. 0.60

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0002
   TIGR03499  61 seeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae.............eelrkelkalkellekql 128
                 +++ ++ ++ ++++p+++++ ++++++++++  k+a+++++++++    e             ++l +e ++l++  e+  
  MMETSP1061-20121228|3691_1  15 NKQTNNHATNSKQQPQQQQQRQQQQQQQQHQYYKTATTNSTQHPPSVPTEeatscrithsnenDNLNDENDNLNDETENDD 95 
                 222222233333333333333333333333333333333333333332223667776665566566666666555555544 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6  14.2   0.00052       1.1     858     998 ..      23     164 ..       4     195 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00052
   TIGR00927 858 degeieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkv...eaeeeeeedekdegeedeeeiaddeevkdetg.eqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeee 998
                  +++ + +++ +++ ++++ +++  ++a +++ ++   + +ee +  +  + +e++    e+++ ++e e+d++++d+++ +dd ++k  ++ + + +  n +e+ ++e  +d  ++ d  d ++++e+ +ee      e e  +
  MMETSP1061-20121228|3691_1  23 TNSKQQPQQQQQRQQQQQQQQHQYYKTATTNSTQHPPSVPTEEATSCRITHSNENDNlndENDNLNDETENDDDDDDDDDDDDDGSGKYRKDyDPDQAYSNYDETDDEELYADYYDDYDDDDDDDDDEDYDEEY---GVELESRN 164
                 23334444566666667777788888888888888888888888777655544333300033333333333333333333333333333222023333344444544444455444444333333222222222...22222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       542  (0.132131); expected 82.0 (0.02)
Passed bias filter:                      237  (0.0577767); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 630.97
//
Query:       MMETSP1061-20121228|3694_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.44
# Mc/sec: 1166.90
//
Query:       MMETSP1061-20121228|3695_1  [L=1750]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-250  831.0   0.1   3.6e-250  830.5   0.0    1.1  1  TIGR02390 RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
    2.1e-98  328.3   6.1    5.9e-76  254.0   3.0    3.9  3  TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
    3.7e-82  274.1   3.6    4.5e-44  148.8   0.9    2.5  2  TIGR02389 RNA_pol_rpoA2: DNA-directed RNA polymerase, subunit A''
      6e-50  168.3   0.9    1.4e-49  167.1   0.7    1.5  1  TIGR02387 rpoC1_cyan: DNA-directed RNA polymerase, gamma subunit
    5.4e-24   81.5   1.8    6.2e-10   35.0   0.0    3.8  3  TIGR02388 rpoC2_cyan: DNA-directed RNA polymerase, beta'' subunit


Domain annotation for each model (and alignments):
>> TIGR02390  RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  830.5   0.0  4.4e-253  3.6e-250       2     853 ..      26     887 ..      25     896 .. 0.91

  Alignments for each domain:
  == domain 1    score: 830.5 bits;  conditional E-value: 4.4e-253
   TIGR02390   2 kkiksikfgllsPeeirklsvvevvtad.........tyde..dGlPiegGlmdprlGviePglrCktCggkvdeCpGhfGkielarPvvhvgfakeikkllratCrkCgrillkeeeieeyleklkklkeegkslaktliekivkeaakkkkCPhCgeeqkeiklekPvefyeeekegk.......vkltpsevrerlekipdedlkllGinpkvarPewlvltvlpvPPvtvrPsitletGerseddlthklvdiirinerlkesieagaPeliiedlWellqyhvatyfdnelpgipkarhrsgrplktlaqrlkGkeGrlrsnlsGkrvnfsartvispdPrisinevGvPeeiakeltvpervteynidelreyvknGpdklpGanyvikpdgrrikiteek.keelaerlepGwvverhlidGdivlfnrqPslhrmsimghkvkvlPgktfrlnlavcpPynadfdGdemnlhvlqteearaeakelmkvekhilsPryGgpiiGgiqdyisgaylltvksklltkeevaki.lkkaklkeeleepaiekakkyytGkeifsallPedlnlelkakvsk....k.eackkeecesdayvviknGkllkGvidkkaigaekgklldkivkeygseaarkfldsvtklairllelrgltislddidiPeeakeeieeliekaekkveklieey...rkgeleplPGrtveetleikilevldkvrdeagevaekyldkeneavilartGargsllnitqvaalvGqqsvrGerikrGykertlphfkkgdieakarGfvrssfkkGlePieyffhaagGreglvdtavrtsqsGylqrrlvnalqdlkveedgtvrdtvgvliqlkyGedgvdpa 853
                 +++k+++fg+++P+e+r++sv++ +t +          y+   +G P+ gG+ dprlG +             ++ pG+fG++elarPv+h g+ ++  k lr +C +C+ri+ + ++++  ++  +k+k++gk+l  +  +++ ++ +k ++C   + + +++ l+   e+++++  g        + l+  +  + ++ + +ed+k+lG+++ +arP+wl+++vlpvPP +vrPs+ +  G  seddlth+lv++++ n  l ++i++g P+ i+e+  + lq+ va++++nel g+p+++ rsgrplktl qrlkGkeGrlr+nl Gkrv+fsartvi++dP++ i +vGvP+++a +ltvp rvt++ni el ++v nGp ++pGa+++i++dg ri+++++k k el   l+pGw+ver+l d d++lfnrqPslh+msimgh+vkvl   tfrlnl  ++PynadfdGdemnlhv+q+  ar+ea+ +m+  + ++s +   p++G +qd + ++  +t+++ ++ k+  +++ + + + +++++ pai k+ +++tGk+++ ++lP+ +nl+ ka++      + +++ ++    d+ v i +G+l++G+idkk+ig+    l+++   + g +++ +f+++v +l+ + + +  ++i+  d    ++++eeie++i+ka+ +v +l+ +    ++g+le  PGrt+ e++e+ + +vl+ +rd+ag+ a++ ld++n++  +  +G++gs +ni+q++a+vGqq v G+ri  G+k+rtlphf k+d+++++rGfv++s+ +Gl+P e+ffha+gGregl+dta +t+++Gy+qrrlv+a++ + + +dgtvr + g+++q+ yGedg+d+ 
  MMETSP1061-20121228|3695_1  26 RRVKKLQFGVVDPNELRQYSVTQAITVNsrqipagvtKYETqiQGQPVYGGVNDPRLGDLH-----------DKSNPGYFGHLELARPVYHQGYFNTTLKTLRCVCFHCSRIKKTMDDHK--MQVAQKIKKRGKRL--NAFHDLLRNVKKCEHCQGSQPKLTKVGLHLEAEYVDDDAGGGaaggdskQFLSGAQAVKVFQTMKEEDMKILGLDTTYARPDWLLVQVLPVPPPHVRPSVSVGGGAASEDDLTHQLVNVVKSNIALSNAIQNGEPNIIVEQFEQALQHNVAAFMNNELRGMPQVTQRSGRPLKTLQQRLKGKEGRLRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPDRVTAFNIHELSQLVANGPTTHPGAKHIIRNDGTRIDLRYVKnKSEL--LLAPGWIVERQLRDDDVILFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQSIAARTEAELMMLSPRVVVSGQSNRPVMGIVQDSLLAVQKMTKRNCFIHKDLTFNMlMWVKNWNGRIPIPAICKPVELWTGKQLLGMILPK-INLHAKANTGPpvgdDgKRMPNTFNAYDNKVTILEGELIEGIIDKKTIGKSMDGLIHTSWLDQGHDETSRFMNQVQQLVNHWVLQSSFSIGACDAVADRKTMEEIEATINKAKLQVLDLVRQGqlgKQGNLEIQPGRTMMESFEQLVNKVLNTARDHAGKSAQSSLDETNSVKAMVSAGSKGSFINISQIIACVGQQNVEGKRIPYGFKKRTLPHFSKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTVRTSGGQIVQFLYGEDGMDAV 887
                 5799******************998865222322332577633699***********9764...........3456***********************************986655444..34455666666666..34445555555655555556677889999999**9998765224555435588899999****************************************************************************************************************************************************************************************************************9944444..59*************************************************************************************************************9999999997766505567789999***********************7.888888887653221345666677788999******************************************************************************************9862236899***************************************************************************************************************************************************************************9975 PP

>> TIGR02386  rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.0   3.0   7.2e-79   5.9e-76     208     778 ..     221     865 ..      93     891 .. 0.78
   2 !   53.2   0.0     3e-18   2.4e-15     872     931 ..    1077    1135 ..    1074    1184 .. 0.89
   3 !   17.5   0.0   1.9e-07   0.00015    1099    1141 ..    1434    1476 ..    1371    1480 .. 0.87

  Alignments for each domain:
  == domain 1    score: 254.0 bits;  conditional E-value: 7.2e-79
   TIGR02386 208 afkesgnkPewmvleviPviPpelrPlvqldggrfatsdlndlyrrvinrnnrlkrllelkaPeiivrnekrllqeavdalfdngrrkkp.vkgknkrplkslsdmlkGkqGrfrqnllGkrvdysgrsvivvGPelklyqvGlPkkmalelfkP.....fiikrlve............kelaan..iksakkliereddevwd...vleevikerP.vllnraPtlhrlgiqafePklveGkairlhPlvcaafnadfdGdqmavhvplskeaqaearvlllasknilnpkdGkpivvPsqdivlGlyyltkekkeekgegkkifsdleevilayengkvelnakikvklkalkkfskegellettvGrvifneilpeelpyinks..................................lskkeise....lieklykklgikevaelldkikelGfkyatkagvtvsiedivvpdek....keilkeadkkvekvkkeyekGllteeerk..kkvveiWsevkdkvtdelakllkkdkk....kknpifvmadsGarGnasqlrqlagmrGlmakpkg.....................eiielpikssfreGlsvleyfisthGarkGladtalktadsGyltrrlvdvaqdvvvkeed 778
                  + ++ ++P+w++++v+Pv Pp +rP v++ gg  +  dl      v++ n  l +  + + P+iiv+   + lq  v a+++n+ r+ p v++++ rplk+l ++lkGk+Gr+r nl+Gkrvd+s+r+vi   P+l ++qvG+P+ +a++l  P     f i++l +            k+++ n   ++  + ++++++ + +   ++e+ +++   +l+nr P lh+++i   + k+++  + rl    ++ +nadfdGd m +hvp s  a +ea +++l+++ +++ ++ +p++   qd +l +  +tk +   +++    f+ l  v           n +i + +          + +e  +G+ ++  ilp+   + + +                                  ++kk+i +    li++ +  +g  e++++++++++l  ++  +++ ++++ d v+  +     + ++++a+ +v  + ++ + G+  + e +  + ++e +++  +kv +  +++  k  +    ++n++  m+++G++G+  ++ q+ +  G  +   g                           +++s+  Gl+ +e+f  + G r Gl dta kta++Gy+ rrlv + + v+ + + 
  MMETSP1061-20121228|3695_1 221 GLDTTYARPDWLLVQVLPVPPPHVRPSVSVGGGAASEDDLTHQLVNVVKSNIALSNAIQNGEPNIIVEQFEQALQHNVAAFMNNELRGMPqVTQRSGRPLKTLQQRLKGKEGRLRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPdrvtaFNIHELSQlvangptthpgaKHIIRNdgTRIDLRYVKNKSELLLApgwIVERQLRDDDvILFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQSIAARTEAELMMLSPRVVVSGQSNRPVMGIVQDSLLAVQKMTKRNCFIHKD--LTFNMLMWVKNW--------NGRIPIPAI--------CKPVELWTGKQLLGMILPKINLHAKANtgppvgddgkrmpntfnaydnkvtilegeliegiIDKKTIGKsmdgLIHTSWLDQGHDETSRFMNQVQQLVNHWVLQSSFSIGACDAVADRKTmeeiEATINKAKLQVLDLVRQGQLGKQGNLEIQpgRTMMESFEQLVNKVLNTARDHAGKSAQssldETNSVKAMVSAGSKGSFINISQIIACVGQQNVE-GkripygfkkrtlphfskddlgPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDG 865
                 4677889********************************************************************************9984667789*******************************************************8876666688999988999*****9888444433224455566666666554333366666666551677**************************9999999*******************************************************999885433333..344443333322........222222222........122333334444444444443333333344444444444444444444455555556666666655543222299999999****************************9998876555500004556666667777777777676666665433567788888777777776666655544555599*************************987654.4489999**********99776444556999****************************************999888776554 PP

  == domain 2    score: 53.2 bits;  conditional E-value: 3e-18
   TIGR02386  872 gklveiGeavGviaaqsiGePGtqltmrtfhtGGvasasdditqGlprvkelfea.rkPkd 931 
                  +++v+ Ge vGv+aaqsiGeP tq+t+ tfh  Gv+++  ++t G+pr+ke++++ ++Pk 
  MMETSP1061-20121228|3695_1 1077 KSKVNPGEMVGVLAAQSIGEPATQMTLNTFHYAGVSAK--NVTLGVPRLKEIINVaKTPKT 1135
                  57899*******************************99..6************96256775 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 1.9e-07
   TIGR02386 1099 lsaasfqettkvltdaaikgkkdkllGlkenvilGkliPaGtG 1141
                  l  asf et  +l daa++++++ l+G+ en++lG+l   GtG
  MMETSP1061-20121228|3695_1 1434 LLRASFEETVDMLMDAALHAEEEVLKGVTENIMLGQLPRVGTG 1476
                  4569*********************************999999 PP

>> TIGR02389  RNA_pol_rpoA2: DNA-directed RNA polymerase, subunit A''
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.9   0.1     1e-39   8.3e-37      15     168 ..    1054    1209 ..    1047    1227 .. 0.83
   2 !  148.8   0.9   5.5e-47   4.5e-44     121     366 ..    1225    1482 ..    1214    1483 .. 0.82

  Alignments for each domain:
  == domain 1    score: 124.9 bits;  conditional E-value: 1e-39
   TIGR02389   15 kkeevskeekleeivkrvekeyleslidpgeavGivaaqsiGePgtqmtlrtFhyaGvaelnvtlGLPRlieivdarktpstPlmtiyledeyekdrekaeevakkieetklekvakdisi..dladkvviieldeeklkekgltvddvkkaikka 168 
                   k+   +e +l+ +v +ve ++++s ++pge vG++aaqsiGeP+tqmtl+tFhyaGv+  nvtlG+PRl ei++  ktp+tP +t+yl +e++ dr++ae v+  +e t l++++k ++i  d   k  ++  d+e +k+     +++++ i+++
  MMETSP1061-20121228|3695_1 1054 LKQFRLSEAALNWVVGEVETRFHKSKVNPGEMVGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTPKTPGLTVYLAEEFSGDRQVAELVVGMLEFTVLKDIVKRTEIwyDPDIKNSVVMQDREWVKDYYDFAEKTEDDINRM 1209
                  5555556669999*******************************************************************************************************9877622333334445556677777666666666666655 PP

  == domain 2    score: 148.8 bits;  conditional E-value: 5.5e-47
   TIGR02389  121 ieetklekvakdisidladkvviieldeeklkekgltvddvkkaikkakkkkevedveestleiklkeeslkellklkek.iknikikGikgikrvvvrke......ked........eyvllteGsnlkevlklegvDktrtttndikeieevlGieaaReaiieeikkvleeqGLdvdiRhlllvaDlmtadGevkqigRhGisgekasvlaRaaFevtvkhLldaavrGevdelkgvveniivgkpirlGtGsvklvm 366 
                  +++ ++++++k+++ ++++  + +e+ +++ ++  +++  v+++  +      v+d  + + e+++ +e    l++l+ + + ++k++Gi+ +k+v +r          d        e+vl t+G+nl  vl ++ +D++rt++ndi+e+   lGie  R a+++e+++v++ +G  v+ Rhl  + D+mt++G++ +i RhGi    + +l Ra+Fe+tv+ L+daa++ e++ lkgv+eni++g+  r+GtG+++l++
  MMETSP1061-20121228|3695_1 1225 VKKIQMSEIVKEVENEYGS-DLSVEVSDDNAEDLVVRIRVVNDVPYNPNF-GAVDDAGNPIEEAEVGQEDDVFLKRLERSlLSSLKLRGIDHVKKVFMRGGakrtvwD-DdkgfgtrnEWVLETDGTNLMGVLGVDYIDPARTISNDIVEVFVSLGIEGVRGALLSELRNVISFDGSYVNYRHLASLVDVMTMQGHLMAIDRHGINRVDTGPLLRASFEETVDMLMDAALHAEEEVLKGVTENIMLGQLPRVGTGDMELLL 1482
                  4566788899999999876.467888888888988888777766555544.4444555545555555544444555555416789***********998543222321.124555556*******************************************************************************************************************************************9976 PP

>> TIGR02387  rpoC1_cyan: DNA-directed RNA polymerase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.1   0.7   1.7e-52   1.4e-49     230     523 ..     224     541 ..     202     547 .. 0.85

  Alignments for each domain:
  == domain 1    score: 167.1 bits;  conditional E-value: 1.7e-52
   TIGR02387 230 atssraewmvldvipvippdlrpmvqldggrfatsdlndlyrrvinrnnrlarlqeilapeiivrnekrmlqeavdalidngrrgrtvv.gannralkslsdiiegkqgrfrqnllgkrvdysgrsvivvgpklklyqcglpkemaielfqp.....fvihrlikrgivn..nikaakkliqradaei................lsvleevitghpvllnraptlhrlgiqafepilvegraiqlhplvcpafnadfdgdqmavhvplsleaqaearllmlasnnvlspatgkpivtpsqdmvlgsyyltaenpdaek 523
                 +t +r++w+ ++v+pv pp +rp v + gg  +  dl      v++ n  l+   +   p+iiv +  + lq  v a+++n  rg   v     r+lk+l + ++gk+gr+r nl+gkrvd+s r+vi   p+l ++q+g+p+ +a++l  p     f ih l +           ak++i+++ ++i                + v  ++ +   +l+nr p+lh++ i     ++++  + +l     + +nadfdgd+m +hvp s+ a++ea l+ml+ + v+s  + +p++   qd +l    +t  n   +k
  MMETSP1061-20121228|3695_1 224 TTYARPDWLLVQVLPVPPPHVRPSVSVGGGAASEDDLTHQLVNVVKSNIALSNAIQNGEPNIIVEQFEQALQHNVAAFMNNELRGMPQVtQRSGRPLKTLQQRLKGKEGRLRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPdrvtaFNIHELSQLVANGptTHPGAKHIIRNDGTRIdlryvknkselllapgWIVERQLRDDDVILFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQSIAARTEAELMMLSPRVVVSGQSNRPVMGIVQDSLLAVQKMTKRNCFIHK 541
                 6899************************************************999999***************************975515678******************************************************98765555599999976533221123456777765544443332222222233333444455667788999**************************8666678*****************************************************9999988876555 PP

>> TIGR02388  rpoC2_cyan: DNA-directed RNA polymerase, beta'' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.3   1.7e-11   1.4e-08       6     211 ..     624     864 ..     620     883 .. 0.64
   2 !   35.0   0.0   7.5e-13   6.2e-10     302     343 ..    1076    1117 ..    1072    1137 .. 0.90
   3 !   12.0   0.0   6.4e-06    0.0052    1184    1224 ..    1436    1476 ..    1415    1480 .. 0.92

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 1.7e-11
   TIGR02388   6 vvdkka....lknliawaykkyGtartaeladklkdlGfkyatragvsisvddllvppekkellea....aekeirateeryrrGeiteverfqkvidtwnetseelkdevvtnfrkt.........dplnsvymmafsGarG...nlsqvrqlvGmrGlmad..pqG.........eiidl.p.....iktnfreGltvteyvissyGarkGlvdtalrtadsGyltrrlvdvsqdvivree 211
                 ++dkk+    +  li  ++   G   t+++ +++++l  ++  +++ si   d +   +  e +ea    a+ ++     + ++G+  ++e   +   t  e+ e+l+++v +  r+          d  nsv  m  +G++G   n+sq+   vG + +  +  p G            dl p     +   +  Glt  e+   + G r Gl+dta +ta++Gy+ rrlv   + v+ r +
  MMETSP1061-20121228|3695_1 624 IIDKKTigksMDGLIHTSWLDQGHDETSRFMNQVQQLVNHWVLQSSFSIGACDAVADRKTMEEIEAtinkAKLQVLDLVRQGQLGKQGNLEI--QPGRTMMESFEQLVNKVLNTARDHagksaqsslDETNSVKAMVSAGSKGsfiNISQIIACVGQQNVEGKriPYGfkkrtlphfSKDDLgPesrgfVENSYLRGLTPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYD 864
                 6777651111556999999999***********************99998766655544444444410004444444444445554444433..22345555555555555554432211112223378899*999999999966678888888887655433223332111111113445532333335566778*************************************9999998854 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 7.5e-13
   TIGR02388  302 haklvdlGeavGiiaaqsiGepGtqltmrtfhtGGvftgeva 343 
                  h  +v+ Ge vG++aaqsiGep tq+t+ tfh  Gv++ +v+
  MMETSP1061-20121228|3695_1 1076 HKSKVNPGEMVGVLAAQSIGEPATQMTLNTFHYAGVSAKNVT 1117
                  8999*********************************98886 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 6.4e-06
   TIGR02388 1184 aasfqettrvlteaaieGksdwlrGlkenviiGrlipaGtG 1224
                   asf+et  +l +aa+    + l+G+ en+++G+l   GtG
  MMETSP1061-20121228|3695_1 1436 RASFEETVDMLMDAALHAEEEVLKGVTENIMLGQLPRVGTG 1476
                  59*********************************99**99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1750 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.94u 0.18s 00:00:01.11 Elapsed: 00:00:00.93
# Mc/sec: 2483.67
//
Query:       MMETSP1061-20121228|3701_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00058   17.7   0.4    0.00058   17.7   0.3    1.1  1  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain
  ------ inclusion threshold ------
      0.019   11.7   0.1      0.021   11.6   0.1    1.0  1  TIGR03935 fragilysin: fragilysin
       0.02   11.7   0.1       0.02   11.7   0.1    1.1  1  TIGR03952 metzin_BF0631: zinc-dependent metalloproteinase lipoprotein, BF0631 family


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   4.2e-07   0.00058     155     198 ..      16      57 ..       5      78 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4.2e-07
   TIGR03296 155 vgdytiqpedagvgVlaHElGHdlglPDlYdtsydgggetpvGd 198
                 +  y+++  ++ v V +HE+GH+lgl +  d   +++g+ ++G+
  MMETSP1061-20121228|3701_1  16 FSFYNNEAASS-VSVQVHEVGHNLGLAHSGDEGGSDYGD-KTGY 57 
                 44455555555.***************999975555555.5655 PP

>> TIGR03935  fragilysin: fragilysin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.6e-05     0.021     340     380 ..      28      68 ..      15      72 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.6e-05
   TIGR03935 340 ktlahelGhiLGaehtDnekdlmYtwyegyvrrnhlseknn 380
                  +  he+Gh LG  h  +e    Y   +gy+  ++l ++ n
  MMETSP1061-20121228|3701_1  28 SVQVHEVGHNLGLAHSGDEGGSDYGDKTGYMGSSYLADDTN 68 
                 5678************99******************99865 PP

>> TIGR03952  metzin_BF0631: zinc-dependent metalloproteinase lipoprotein, BF0631 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.4e-05      0.02     228     260 ..      22      53 ..      12      78 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.4e-05
   TIGR03952 228 ssadvvetlAHELgHYlGLfHvFgeektedaid 260
                 + a  v +  HE+gH lGL H   e+  +d+ d
  MMETSP1061-20121228|3701_1  22 EAASSVSVQVHEVGHNLGLAHSGDEGG-SDYGD 53 
                 4556667778***********988876.44334 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 479.96
//
Query:       MMETSP1061-20121228|3703_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 500.46
//
Query:       MMETSP1061-20121228|3705_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 1415.22
//
Query:       MMETSP1061-20121228|3706_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-29   99.2   1.7    1.1e-28   98.4   1.2    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    4.8e-20   69.4   2.9      7e-20   68.8   2.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    1.3e-05   23.2   1.1      2e-05   22.6   0.7    1.2  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   1.2   8.3e-32   1.1e-28       1     105 [.       6     124 ..       6     139 .. 0.75

  Alignments for each domain:
  == domain 1    score: 98.4 bits;  conditional E-value: 8.3e-32
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg...ekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfea...........sefgdigdifeeffggggg 105
                 d Ye+Lgv kdA+e+eikkAYrkla k+HPD++     +kea+e f +i++Aye+Lsd++kr++YD+ g++g +g +++++++ ++ ++            +f d  +if+++f +++g
  MMETSP1061-20121228|3706_1   6 DAYEVLGVAKDATESEIKKAYRKLALKHHPDKQTTdasRKEASEIFAKISNAYEILSDKQKRQEYDNRGRSGDNGYGASNSRRRTSAHDfssfgggggdgFHFHDPFEIFNRVFREEFG 124
                 66*****************************998756689********************************99977663333222222444555665553344444555555555444 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.8   2.0   5.1e-23     7e-20       3      70 ..       6      77 ..       5      86 .. 0.89

  Alignments for each domain:
  == domain 1    score: 68.8 bits;  conditional E-value: 5.1e-23
   TIGR03835  3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka....adaakifaeineandvLsnPkkraryDkyGhDG 70
                D yevLg+ +Da e+eikka+rkLa k+hPD+        +a +ifa i +a+++Ls+ +kr++yD  G  G
  MMETSP1061-20121228|3706_1  6 DAYEVLGVAKDATESEIKKAYRKLALKHHPDKQTTdasrKEASEIFAKISNAYEILSDKQKRQEYDNRGRSG 77
                88*****************************87543245689*************************99877 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.7   1.5e-08     2e-05       5      56 ..      19      70 ..      16      71 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.5e-08
   TIGR00714  5 ekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56
                e+ ++k yrkl  ++HPD   + + ++ a++  +++ +Ay+ L d  kR ey
  MMETSP1061-20121228|3706_1 19 ESEIKKAYRKLALKHHPDKQTTDASRKEASEIFAKISNAYEILSDKQKRQEY 70
                577899************99999999***********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1130.83
//
Query:       MMETSP1061-20121228|3709_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-115  384.3   0.1   2.5e-115  383.8   0.1    1.2  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
      1e-08   31.6   0.5    0.00035   16.6   0.0    3.4  2  TIGR00484 EF-G: translation elongation factor G
    5.4e-07   26.2   0.1    8.6e-05   18.9   0.0    2.5  2  TIGR01393 lepA: GTP-binding protein LepA


Domain annotation for each model (and alignments):
>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.8   0.1  1.8e-118  2.5e-115     199     594 .]      67     491 ..      61     491 .. 0.90

  Alignments for each domain:
  == domain 1    score: 383.8 bits;  conditional E-value: 1.8e-118
   TIGR01394 199 eplqllvttldydeylGriaigrverGkvkkgqqvallkkd.....g.....kiekariskllafeglerveide..aeaGdivavaGled.ieigetiadaeea...........ealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveet.eeadkfevsGrGeLhlsiLietmrreGfelsvskPkvivke..idgkklePieeltidvpeefvgaviekl.gkrkgelkdmeskgsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkgeiek.rkkGslvsleeGtatayallnleerGklfvspgeevyeGmivGehsreeDldvnvlkekkltnvrssgkdeavkltpprklsLeealeyiedDelvevtPksirlrkkvldekerkr 594
                 + ++l  +t+ yd+ylGr  +gr+++G+v ++++v++l+++     g      ++ + ++ l++ +g++rv++++  a aGdiv++aG++d i++g+t++ ++++           ea+++  + +Ptlsm fs n++PlaG+eg+ vt  k+r+rL +e ++nv+l ve++ +++++ +v  rGeL+l+iLie+mrreGfe+ +s P +++ e  + g+ +eP+ee+tidv+ e++g ++ +l + rkg l +m+++++ ++rl +++Psrgl+Gf +e  +atrG++++n+v+ e +++ g++ +  +kG l+s ++G+at+yal++l  rG+lfv+pg+ vy Gmi+Ge++++ Dl+vn++++k+ +n+r+ +kde+v l+pp+k+++ee + y++ De++evtP+++rlrk+ ld++erk+
  MMETSP1061-20121228|3709_1  67 DQFSLAAVTVGYDSYLGRTCTGRITSGHVTANDAVTVLRRKdpcedGessetPVAPTTLKGLFVNKGISRVPLESqiAYAGDIVTLAGVPDsIRVGDTVTGVNTSangeggerqvlEAIDTPPLVPPTLSMEFSANNGPLAGSEGTEVTPTKLRNRLIAETDNNVTLTVESSaRDSERTNVYARGELQLGILIEQMRREGFEMVISPPSIVTTEdeETGTLMEPFEEVTIDVDSEYAGYIVSALtSDRKGILLEMNESADAKTRLVLEVPSRGLLGFPSEAASATRGSAVVNHVYIEDRKHVGPLGDgLEKGKLISSDRGKATTYALASLAARGTLFVEPGDVVYPGMIIGENAKQGDLEVNPVRAKQASNMRTQNKDEKVYLSPPKKMTIEEMIGYMSPDEMIEVTPSTLRLRKAELDPTERKK 491
                 67889999******************************9983443321111122334567899********99987799**********86489*****976543122222222226777778899*******************************************9861567899********************************987557899*********************998357**********************************************************75279*****************************************************************************************************************96 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.2   4.5e-05     0.062     266     467 ..      22     265 ..      15     281 .. 0.53
   2 !   16.6   0.0   2.6e-07   0.00035     597     665 ..     285     355 ..     275     365 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 4.5e-05
   TIGR00484 266 GvqllldavvdylPsPv.dvkaikaidedt...ekeielkasd..depfvalafkvatdpfvgkltfvrvysGvlksGsevlnsrkek........kervg..rlvkmhank...r..eeieevraGdiaaliGlkdt.ttGdtlcdeka........evilesmefpe...PvislavePkt..kadqekmgialgkl.....aeedPtfkvftd...eesgqtiiaGmGelhldiivdrlkre 467
                 G+ llld +++ +P P   v++ + + +++   ++  +++ +d  +++f+  a  v  d + g+    r+ sG +   + v+  r++            v+   l  +  nk   r   e +  +aGdi++l G+ d+   Gdt++  ++          +le+++ p    P +s+     +   a  e   ++ +kl     ae d     +++    +s++t +   Gel l i++++++re
  MMETSP1061-20121228|3709_1  22 GMTLLLDKLLELIPEPSvRVHK-EDYASKAssgDNGGSMRGEDfvNDQFSLAAVTVGYDSYLGRTCTGRITSGHVTANDAVTVLRRKDpcedgessETPVAptTLKGLFVNKgisRvpLESQIAYAGDIVTLAGVPDSiRVGDTVTGVNTsangeggeRQVLEAIDTPPlvpPTLSMEFSANNgpLAGSEGTEVTPTKLrnrliAETDNNVTLTVEssaRDSERTNVYARGELQLGILIEQMRRE 265
                 7788888888888888523433.222221111355555555554356677777888888888888888888888888888876665431111111111122112223333331112113555678888888888876425688776544311111111456777776532225555444333211344444444333322222245555444333311257889999999999999999999998 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2.6e-07
   TIGR00484 597 PvllePimkvevevPeeylGdvlGdlsr.rrgliegs.eeresvkvvkaevPlsemfGyatdlrsatqGra 665
                  +l+eP  +v+++v +ey G ++  l++ r+g++  + e+ ++ + +  evP   ++G+ ++  sat+G a
  MMETSP1061-20121228|3709_1 285 GTLMEPFEEVTIDVDSEYAGYIVSALTSdRKGILLEMnESADAKTRLVLEVPSRGLLGFPSEAASATRGSA 355
                 689********************99865277876555156677778999*******************987 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0014       1.9     198     232 ..      77     111 ..      66     184 .. 0.56
   2 !   18.9   0.0   6.3e-08   8.6e-05     376     476 ..     264     365 ..     257     368 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0014
   TIGR01393 198 vydayrGvvvyvrvveGkikkgdkikllstgkeye 232
                  yd+y G  +  r+++G+++++d +++l  +   e
  MMETSP1061-20121228|3709_1  77 GYDSYLGRTCTGRITSGHVTANDAVTVLRRKDPCE 111
                 59***********************9998754333 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 6.3e-08
   TIGR01393 376 kdgevievenPselpe.eekieeveePyvkatiivpeeylgaile.lcqekrgvlkkleyldkervelvyelPlaeivldffdklksiskGyasldyelieyr 476
                 ++g +++++ Ps + +  e+  ++ eP+ ++ti v +ey g i++ l  +++g+l +++   + +  lv e+P    +l f  +  s ++G a +++  ie r
  MMETSP1061-20121228|3709_1 264 REGFEMVISPPSIVTTeDEETGTLMEPFEEVTIDVDSEYAGYIVSaLTSDRKGILLEMNESADAKTRLVLEVPSRG-LLGFPSEAASATRGSAVVNHVYIEDR 365
                 567788888898876625677899******************9973566999*********************655.679***********999988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1628.94
//
Query:       MMETSP1061-20121228|3710_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1898.61
//
Query:       MMETSP1061-20121228|3707_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1156.85
//
Query:       MMETSP1061-20121228|3712_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1001.30
//
Query:       MMETSP1061-20121228|3713_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-08   31.5   1.2    4.6e-08   31.5   0.9    1.8  2  TIGR01384 TFS_arch: transcription factor S


Domain annotation for each model (and alignments):
>> TIGR01384  TFS_arch: transcription factor S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.3      0.13   5.5e+02      28      58 ..      12      42 ..       2      47 .. 0.57
   2 !   31.5   0.9   1.1e-11   4.6e-08       1      97 [.      51     158 ..      51     160 .] 0.64

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.13
   TIGR01384 28 kkkkeklkvtekvkekkketilveeeeletl 58
                ++++ + +  ++ ++ ++e il ++e+ ++ 
  MMETSP1061-20121228|3713_1 12 NEPEAQHQGLDDDDDDEEEDILDMGEDDNPT 42
                3344455555566666677777666666655 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 1.1e-11
   TIGR01384   1 kfcpkcgslmvpkeG......kykctkcGyekekkkke...klkvtekvkekkket.ilveeeeletlptkiecpkcknke.yywlkqtrrdepetrfykckkcgkvw 97 
                 +fcp  +s++ p+e       +y c+ c y ++ + +    ++ ++++v +  +     v ++ + + +++ +c +c+n+e  +++  + + ++ +  + c +c+++w
  MMETSP1061-20121228|3713_1  51 RFCPHDSSMLYPQEDkrnrklQYACRLCRYTEHAEDQPliyRYDLKKEVGNILHTVpSAVSDDPTLARSQNANCANCGNNEaVFFMSDSTQSDSLALIFVCCNCDHKW 158
                 6***********5443445568********9986444311134444444444333312355555556669999*****9985355555555556667778889***** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.37
# Mc/sec: 570.76
//
Query:       MMETSP1061-20121228|3719_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|3716_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 285.98
//
Query:       MMETSP1061-20121228|3721_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 361.23
//
Query:       MMETSP1061-20121228|3722_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 632.45
//
Query:       MMETSP1061-20121228|3724_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.10s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1647.59
//
Query:       MMETSP1061-20121228|3723_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 2003.83
//
Query:       MMETSP1061-20121228|3726_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.45
# Mc/sec: 1677.73
//
Query:       MMETSP1061-20121228|3730_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|3729_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-161  535.5   0.0   3.2e-161  535.3   0.0    1.0  1  TIGR00408 proS_fam_I: proline--tRNA ligase
    6.2e-29   99.1   0.1    9.9e-14   48.9   0.0    2.1  2  TIGR00409 proS_fam_II: proline--tRNA ligase
    1.2e-14   52.0   1.4      1e-07   29.1   0.1    2.1  2  TIGR00418 thrS: threonine--tRNA ligase
    8.8e-06   22.3   0.0      0.014   11.8   0.0    2.2  2  TIGR00389 glyS_dimeric: glycine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  535.3   0.0  3.1e-164  3.2e-161       2     475 .]     110     615 .]     109     615 .] 0.94

  Alignments for each domain:
  == domain 1    score: 535.3 bits;  conditional E-value: 3.1e-164
   TIGR00408   2 aekeedfseWydqilekaelldyydvkGlvvllpnsfkiwekiqkllddkldeieveevyfPllipeselekEkeHikGFepEvylitqaGkkkLeeklalRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkhtrPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPvlvgrksekekFaGaeytvaieaim.pdgralqiatsHdLgqnFaktFeikfenkeg....ekayayqtsyGlstRvigaliliHsDdkGLvlPpkvapiqvvvipiifkkk....enkkvlelarkveekLkkleiRvelderdnrpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekk.Kvevsl...deleekvkelleelkedlfkkAkelveekvkeveeleeikqalnekkgvvlvalkgeeeleeelkekvk...............atircieedldvldl.gqkCik....cerkakkyvllakay 475
                 a+k+ed + Wy+q+++k+e+++yy+vkG+++++p ++k we iq ++d k++e +ve+ yfPl+ip++ le+Ek+H++ F+pE++++t+ G ++Lee++a+RPtsEt++y  +k w++syrdLPl+lnq+ +v+R+E + t  +lR rEfl++E+Ht++a ++ea  ev +il+lY++++e+l+a+Pv+ g k++ e F+Gaeyt ++e ++ p gralq atsH+Lgq Fak+F i+f+++++    ++++ayq+s+GlstR ++a i+iH+Dd GLvlPp++a +qvv++p+  k +     +++v +++++ +ekL  ++iRv++derdn+pG+kf+++E+kG+P+r+evgpkdiek+++v+ +R+++  K + s+    ++ e v++ l++++++lf kA + ++  ++ ++e++++++ ln  k +vl++++g+  +e+ +k k+k               a+++c++ + + +    ++C++    +++k +k  l++++y
  MMETSP1061-20121228|3729_1 110 AKKAEDVPLWYEQVITKSEMMEYYPVKGCYIYRPWAYKTWELIQGWFDGKIKELGVENCYFPLFIPKTYLEREKDHLDDFAPEIAMVTKCGDRELEEPVAIRPTSETAMYASFKNWIQSYRDLPLRLNQWCSVVRMEVRQTNFFLRHREFLWQEGHTAFASEKEATTEVRQILQLYAQIYEDLMAVPVIRGTKTKAETFPGAEYTETVEVFIsPTGRALQGATSHHLGQRFAKMFGIEFQDPTDptgkSRQFAYQNSWGLSTRSMAAPIMIHGDDRGLVLPPRIAGFQVVIVPVGLKASspdeLRQQVKQKCEEYREKLISAGIRVKFDERDNSPGWKFNHWEMKGVPIRVEVGPKDIEKESFVIAKRNHSDpKAAKSFgkdSQVVEDVQKALDDVHDELFAKALAERDACIASATEWKDFSPLLNSGK-MVLIPFCGDPACEDMVKAKSKdeaseaevmgglkmgAKSLCVPMEDKYQADcPETCLNpncpTGKKVEKWTLFGRSY 615
                 6899*************************************************************************************************************************************************************************************************************9774788*************************998887889*******************************************77776667666799**************************************************************9877777776433689999*****************************************.******************************************98766554448888763333467777778888877 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.2     2e-16     2e-13      37     188 ..     136     292 ..     112     300 .. 0.88
   2 !   48.9   0.0   9.6e-17   9.9e-14     416     553 ..     335     482 ..     326     497 .. 0.82

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 2e-16
   TIGR00409  37 sGlynylPlalrvlekvenivreemnkagaievllpalqs.aelWqesgRwdkygeellrlk...Drk.erefvLgpthEEvitdlvkneiksYkqlPvnlYqiqtKfRDEiRPRfGllRgREFimKDaYsFhsdeeslkatyqkldeaYkkifsrl 188
                  G y y P a++  e ++     ++++ g  ++ +p + + + l +e + +d++++e+  +    Dr+ e   ++ pt E  + +  kn i+sY++lP+ l q  +  R E+R     lR REF+ +++    ++e++++ +  ++ + Y +i+++l
  MMETSP1061-20121228|3729_1 136 KGCYIYRPWAYKTWELIQGWFDGKIKELGVENCYFPLFIPkTYLEREKDHLDDFAPEIAMVTkcgDRElEEPVAIRPTSETAMYASFKNWIQSYRDLPLRLNQWCSVVRMEVRQTNFFLRHREFLWQEGHTAFASEKEATTEVRQILQLYAQIYEDL 292
                 699**********************************99945678899********876665122554245579********************************************************9888888899999999********997 PP

  == domain 2    score: 48.9 bits;  conditional E-value: 9.6e-17
   TIGR00409 416 kLGtkYskalkatflde...egkeq.vlemGCYGiGvsRlvsaivEqkrDekGiiWpkaiAPyevvivvsnvkdeeqkklaeevyselk.......akgvdvllDdrneraGvkfrdseliGiplavvvGkksldnkeiEvkkrrngek 553
                 +LG++++k ++++f+d     gk + +     +G+  +R ++a +  + D++G++ p  iA ++vviv+   k  +  +l ++v+++ +       ++g+ v +D+r++ +G kf+  e+ G+p++v vG k ++++++ + kr++ + 
  MMETSP1061-20121228|3729_1 335 HLGQRFAKMFGIEFQDPtdpTGKSRqFAYQNSWGLS-TRSMAAPIMIHGDDRGLVLPPRIAGFQVVIVPVGLKASSPDELRQQVKQKCEeyrekliSAGIRVKFDERDNSPGWKFNHWEMKGVPIRVEVGPKDIEKESFVIAKRNHSDP 482
                 79************9752226787647778889986.8999****************************998876655555555554444444455*****************************************999998887665 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   9.8e-11     1e-07     191     342 ..     136     292 ..     106     306 .. 0.85
   2 !   21.8   0.1   1.5e-08   1.6e-05     467     548 ..     390     481 ..     378     501 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 9.8e-11
   TIGR00418 191 pGlvlwlpkGalirklledfvrekllkrgyeevetPila.dlelweisghldkykermfrfkeee....ekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEksGeLvGLkRvRgftldDaHi.fctedQikeEiknalrliqkvlkkl 342
                 +G  ++ p   +  +l++ ++  k ++ g e+ + P  + ++ l + + hld +  +  ++++      e+ ++++p       + fk+ ++syrdLPlrl +  +v R+E +   + + R R+f  +  H+ f++e  ++ E+ ++l+l  +++++l
  MMETSP1061-20121228|3729_1 136 KGCYIYRPWAYKTWELIQGWFDGKIKELGVENCYFPLFIpKTYLEREKDHLDDFAPEIAMVTKCGdrelEEPVAIRPTSETAMYASFKNWIQSYRDLPLRLNQWCSVVRMEVRQ-TNFFLRHREFLWQEGHTaFASEKEATTEVRQILQLYAQIYEDL 292
                 6888999999999999999999**************7651667788899*****98877666655234456689**************************************95.57788***********94556999****************997 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 1.5e-08
   TIGR00418 467 PlwLaPvQvrvipv..........sekhldyakkvaeklkkegirvdvddrneklgkkiReaqkekipyvlvvGdkEveeeavtvRerkeek 548
                 P  +a  Qv+++pv           +++++ +++ +ekl ++girv++d+r+++ g k  + +++ +p+ + vG k++e+e+  + +r++ +
  MMETSP1061-20121228|3729_1 390 PPRIAGFQVVIVPVglkasspdelRQQVKQKCEEYREKLISAGIRVKFDERDNSPGWKFNHWEMKGVPIRVEVGPKDIEKESFVIAKRNHSD 481
                 5566778888888833322222112345567888899*******************************************887776665433 PP

>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   1.3e-05     0.014     146     226 ..     196     276 ..     182     314 .. 0.81
   2 !    8.4   0.0   0.00015      0.15     463     547 ..     387     480 ..     376     497 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
   TIGR00389 146 eteiGvsg.kkkgylRPEtAqGiFinFkkllefkreklPFgvaqiGksfRnEisprqgllRvrEFeqaEiefFvdPeekshe 226
                  t+ G ++ ++ + +RP     ++  Fk+ +++ r  lP    q     R E+   ++ lR rEF   E       e+++  
  MMETSP1061-20121228|3729_1 196 VTKCGDRElEEPVAIRPTSETAMYASFKNWIQSYR-DLPLRLNQWCSVVRMEVRQTNFFLRHREFLWQEGHTAFASEKEATT 276
                 68888888778899***99999**********986.6****************************99886554444444444 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00015
   TIGR00389 463 lrlkpkvaPikvlvlpl....vn....keelkeiakeiakaLrkeeiiikyddsgs.iGkrYaraDeiGtpfavtiDfetleDetvtlReRdsl 547
                 l l+p++a  +v+++p+    ++    ++++k++ +e  ++L + +i++k+d+ +   G ++ + +  G+p  v +  + +e e+  + +R+  
  MMETSP1061-20121228|3729_1 387 LVLPPRIAGFQVVIVPVglkaSSpdelRQQVKQKCEEYREKLISAGIRVKFDERDNsPGWKFNHWEMKGVPIRVEVGPKDIEKESFVIAKRNHS 480
                 779*************83333231111334556666778889999*******976559*****************************9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.62
# Mc/sec: 1309.25
//
Query:       MMETSP1061-20121228|3733_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   13.5   0.9      0.047   11.6   0.0    2.3  2  TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase


Domain annotation for each model (and alignments):
>> TIGR00473  pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   1.1e-05     0.047      31      72 ..     157     200 ..     149     236 .. 0.76
   2 ?   -1.0   0.1     0.092   3.8e+02      96     128 ..     307     341 ..     271     374 .. 0.50

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.1e-05
   TIGR00473  31 lilDslDGrvArktntvskfGkelDSlaDvvs..FGvaPallay 72 
                   lD +DG  Ar+t+++s +G  +D   D +   FG a  ++ +
  MMETSP1061-20121228|3733_1 157 QTLDNMDGKQARRTGSSSPLGLLFDHGCDAINsiFGSASVIIGM 200
                 579**************************996558877666544 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.092
   TIGR00473  96 RLarFnvltakld..sfiGlpipvaalllvslvll 128
                  + +F   t+k++  +   lpi+v +l+  ++  +
  MMETSP1061-20121228|3733_1 307 VILKFAAVTSKHKgsAQALLPIFVHSLCFLVIGWT 341
                 33345444444443233445666666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2034.45
//
Query:       MMETSP1061-20121228|3737_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.1    4.2   8.9        8.4    4.2   6.2    1.1  1  TIGR02563 cas_Csy4: CRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST


Domain annotation for each model (and alignments):
>> TIGR02563  cas_Csy4: CRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   6.2     0.002       8.4      87     148 ..      15      58 ..       2      65 .. 0.50

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.002
   TIGR02563  87 kvpadkvkratvrrkqkkssaarlkkrlerrqlindEearkkikkkkekranlpylslksas 148
                 kv+                  ++ +kr+++r + ++E++rk+  k+ +k+    + + +s+s
  MMETSP1061-20121228|3737_1  15 KVE------------------EKGEKRIKSRSKSKKESKRKREAKRDRKHHRKRHRRRDSSS 58 
                 333..................34444444444444444444444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|3734_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.9e-198  658.0  20.9   2.4e-198  657.7  14.5    1.0  1  TIGR02348 GroEL: chaperonin GroL
    8.6e-28   95.2  10.0    2.5e-20   70.5   2.9    2.4  2  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
    3.5e-22   76.2   5.1    1.4e-15   54.5   1.4    2.2  2  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    2.3e-19   67.1   5.6    1.6e-15   54.5   1.3    2.3  2  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    2.1e-16   57.5  11.5    2.5e-15   53.9   2.3    2.9  3  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    2.8e-16   56.9   4.0    1.8e-12   44.4   0.8    2.2  2  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    5.4e-14   49.6  11.2    1.3e-13   48.4   2.3    2.7  3  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    8.9e-14   48.8   5.8    8.2e-12   42.3   0.9    2.2  2  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    3.8e-13   46.6   6.2    1.1e-09   35.3   0.9    2.8  3  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    7.2e-12   42.3   1.7    4.3e-09   33.2   0.3    2.3  2  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit


Domain annotation for each model (and alignments):
>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  657.7  14.5  5.8e-201  2.4e-198       1     524 [.      35     563 ..      35     564 .. 0.97

  Alignments for each domain:
  == domain 1    score: 657.7 bits;  conditional E-value: 5.8e-201
   TIGR02348   1 akeikfdeearkalekGvdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkeeiaqvatisanndeeiGeliaeamekvgkdGvitveesksletelevveGmqfdrGyvspyfvtdaekmevelenplilitdkkisavkdllPllekvaksgkplliiaedvegealatlvvnklrgvlkvaavkaPgfGdrrkamlediailtggqviseelglkleevtleklGkakkvtvdkdettivegagekeaikerveqikaqieetesdydkeklqerlaklaGGvavikvGaatetelkekkarvedalnatraaveeGivaGGGvallraaeklee..lk.eksedekvGveivkraleaPlrqiaenaGkdgavvvekvk...ekkdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavvadkp 524
                 ak+++f e++r++l  G++++a+avkvtlGPkgrnvvle+++GaP+i++dGvt+a+ei l d+ en+Gakl++eva+k++++aGdGttt+t+++qai ++G+++v++G np++l rGi ka++ v++++k+++k++++ e++++vati+++ + e+G++ia+a +kvg+ G   vees++l +e+e++eG+  drGy+spyfv d+e+++ el np il+td ki +v+d++Plle+++ks  plliiaedv geal++lvvnk+rgvl+v+a+kaPgfG+rr+++ +diai tg++ ++eelg++l++vtl++lG+a++++v k++ttiv +  ++e+i++r++q++++ e++++d+dk+k+ er+a l GG+a ikvGaatetelk+kk+r edaln+ ++a e G+v+GGG+ l +++ k +e  l+ ++++de+ G++i+ +a+ aP  q+aenaG +gavv+ kv+   e+k++e+G++a + ey dl+e G++dpakvt  a++n+as+agl+ltte++v+++p
  MMETSP1061-20121228|3734_1  35 AKRVSFREDSRRKLVDGINQVANAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIILGDPEENVGAKLIQEVAQKSDNKAGDGTTTSTIMTQAITNNGMRAVTSGINPVALNRGIRKAATLVTTKIKEVAKPITGIEDLKDVATIASG-SVEMGRIIAQAADKVGETGSTVVEESQTLFDEIEFTEGLTIDRGYISPYFVKDQERQIGELVNPRILVTDAKIDNVNDVVPLLEQLVKSKDPLLIIAEDVTGEALSALVVNKMRGVLDVVAIKAPGFGNRRREYTQDIAIATGASFVAEELGITLDSVTLDMLGTADRIVVAKESTTIVTDGKHQEDIDARISQLRREQENADTDFDKDKFTERIASLGGGIARIKVGAATETELKDKKLRYEDALNSVQSARELGLVPGGGACLAHIQLKYSEeiLDaMDNDDERAGAQILLNAMGAPCMQVAENAGIEGAVVLSKVQtlgEEKGFEWGWDAGSMEYCDLYERGVVDPAKVTINAIENSASVAGLVLTTECLVTEIP 563
                 79**************************************************************************************************************************************************999.699**********************************************************************************************************************************************************************************************************************************************************************999988776554415677********************************9998332458899***********************************************986 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   2.9   6.1e-23   2.5e-20      15     170 ..      42     202 ..      32     270 .. 0.85
   2 !   27.8   0.2   5.6e-10   2.3e-07     386     515 ..     427     556 ..     406     561 .. 0.85

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 6.1e-23
   TIGR02339  15 rdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehP....aakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekid.vedkellkkvaetsltskavaeeakdklae 170
                 +d++++ +   + va+avk tlGP+G + +L    G   i nDG+ti +e+ + +P    +akl+ eva+  d+++gDGttt  +++ ++ +++   + ++i P  + +G rkaa+  +  i+e+a+ i+  ed + +  +a+ s+    +  +a+dk+ e
  MMETSP1061-20121228|3734_1  42 EDSRRKLVDGINQVANAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIILGDPeenvGAKLIQEVAQKSDNKAGDGTTTSTIMTQAITNNGMRAVTSGINPVALNRGIRKAATLVTTKIKEVAKPITgIEDLKDVATIASGSVEMGRIIAQAADKVGE 202
                 4566667778889**************************************9987754447*******************************************************************963688888888888888644333466666654 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 5.6e-10
   TIGR02339 386 leDalkvvksvledgkvvaGgGavevelakrlreyaak.ieG.reqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriD 515
                  eDal++v+s+ ++  +v+GgGa  + + ++  e+  + +    e   ++   +a+ +  + +aenaG++   +l ++ +  e+ +  + g d  + e  d +e+gv++p+kv  +ai+ ++ +a l+l  +
  MMETSP1061-20121228|3734_1 427 YEDALNSVQSA-RELGLVPGGGACLAHIQLKYSEEILDaMDNdDERAGAQILLNAMGAPCMQVAENAGIEGAVVLSKVQTLGEE-KGFEWGWDAGSMEYCDLYERGVVDPAKVTINAIENSASVAGLVLTTE 556
                 68******998.667799**********9999877644044314666788899**************************99996.67899************************************999765 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   1.4   3.3e-18   1.4e-15      24     146 ..      49     174 ..      42     214 .. 0.86
   2 !   22.5   0.0   1.6e-08   6.7e-06     382     514 ..     423     555 ..     407     562 .. 0.76

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 3.3e-18
   TIGR02345  24 inacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhP....aakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeekse 146
                 ++ ++++a+++k tlGP+G + +++ +   + + ndG ti +++ +  P     akl+ ++a+  d+  GdGtt+ ++++  + ++ +  +  g++p  + r++r+a +l+ +k+ke+a  ++    e
  MMETSP1061-20121228|3734_1  49 VDGINQVANAVKVTLGPKGRNVVLERNYGaPEIVNDGVTIAREIILGDPeenvGAKLIQEVAQKSDNKAGDGTTTSTIMTQAITNNGMRAVTSGINPVALNRGIRKAATLVTTKIKEVAKPITGI--E 174
                 5667899****************999988799************999994444489999************************************************************999842..2 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 1.6e-08
   TIGR02345 382 aerslhdaimivrralkakkivaGGGa....ielelskllrekskkidgk..qqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsv 514
                  +   +da+  v+ a ++  +v+GGGa    i+l+ s+ + +   + d++  +q++++    a+ +   ++aenaG +   +l k+++  ++ ++   G d  + e  d  e+ v +P+ v +na++ +++ a ++l+ 
  MMETSP1061-20121228|3734_1 423 KKLRYEDALNSVQSA-RELGLVPGGGAclahIQLKYSEEILDAMDNDDERagAQILLN----AMGAPCMQVAENAGIEGAVVLSKVQTLGEE-KGFEWGWDAGSMEYCDLYERGVVDPAKVTINAIENSASVAGLVLTT 555
                 555567888888766.677899999984444556666666555444443312355555....55566789******************9999.77778**********************************9999876 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   1.3   3.8e-18   1.6e-15       9     155 ..      43     195 ..      36     210 .. 0.86
   2 !   13.8   0.1   8.5e-06    0.0035     384     509 ..     428     554 ..     410     561 .. 0.83

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 3.8e-18
   TIGR02342   9 dvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhp....aakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvd.lsdrealiksattsls.skvvsq 155
                 d r   +   + va+a++ +lGpkG + +++ + G   i ndG ti +++ +  p     akl+ e+++  d +aGdGtt+  +++ a+ +   + ++ gi p+ +  ++++aa      +ke+++p+  ++d + + + a+ s++  ++++q
  MMETSP1061-20121228|3734_1  43 DSRRKLVDGINQVANAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIILGDPeenvGAKLIQEVAQKSDNKAGDGTTTSTIMTQAITNNGMRAVTSGINPVALNRGIRKAATLVTTKIKEVAKPITgIEDLKDVATIASGSVEmGRIIAQ 195
                 556666777889**************************************99999444459******************************************************99999999999985245556666666666642355555 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 8.5e-06
   TIGR02342 384 hdalcvirslvkkraliaGGGapeieialklskka.relkG.vesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilk 509
                  dal  ++s  ++ +l++GGGa    i lk s++  + ++   e    +   +a+    + +aenaG++   v+++++   ++   + G +       d++e  v+ p+ vt  a+  ++ +   +l 
  MMETSP1061-20121228|3734_1 428 EDALNSVQS-ARELGLVPGGGACLAHIQLKYSEEIlDAMDNdDERAGAQILLNAMGAPCMQVAENAGIEGAVVLSKVQTLGEEKGFEWGWDAGSMEYCDLYERGVVDPAKVTINAIENSASVAGLVLT 554
                 578888877.57899************999998752445441445567888999999999******************999999999*****************************988776666665 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   2.3   6.1e-18   2.5e-15      34     183 ..      50     203 ..      33     214 .. 0.86
   2 ?   -0.1   0.1      0.14        58      39      95 ..     332     386 ..     313     392 .. 0.72
   3 !    7.3   0.0    0.0008      0.33     409     524 ..     438     554 ..     410     561 .. 0.79

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 6.1e-18
   TIGR02343  34 aaakavasilrtslGpkGldkiliskdgditvtndGatilekmdl...deei.akllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaei 183
                    + va+ ++ +lGpkG + +l  + g   + ndG ti +++ l   +e++ akl+ e+++  d++ GdGtt+  +++ a+ ++  + +  Gi p+ +  G  kaa +   k++e+a+ i+  ed k+    a+ +    +i+ ++ +++ e 
  MMETSP1061-20121228|3734_1  50 DGINQVANAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIILgdpEENVgAKLIQEVAQKSDNKAGDGTTTSTIMTQAITNNGMRAVTSGINPVALNRGIRKAATLVTTKIKEVAKPITGIEDLKDVATIASGSVEMGRIIAQAADKVGET 203
                 55678************************************9976222445559*******************************************************************998998887766666666677888877777665 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.14
   TIGR02343  39 vasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqde 95 
                 va+ l  +l    ld  +++  + i+v+ + +ti+ + + +e+i   + +l + q++
  MMETSP1061-20121228|3734_1 332 VAEELGITLDSVTLD--MLGTADRIVVAKESTTIVTDGKHQEDIDARISQLRREQEN 386
                 444444444444555..456667899999999**99999999999999999998876 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0008
   TIGR02343 409 kdsrivyGGGaaeiacslaveeea.dklsgv.eqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilk 524
                 ++  +v GGGa+   + l  +ee  d +    e+   + + +a+    + +aen+G++   +ls+v+++  +ek ++ G d  +    d+ e+ v+++    ++ i+ ++ +  ++l 
  MMETSP1061-20121228|3734_1 438 RELGLVPGGGACLAHIQLKYSEEIlDAMDNDdERAGAQILLNAMGAPCMQVAENAGIEGAVVLSKVQTLG-EEKGFEWGWDAGSMEYCDLYERGVVDPAKVTINAIENSASVAGLVLT 554
                 56668999***9999999987765255555414455677889999999******************9875.7899**********************998888888887777777775 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.8   4.3e-15   1.8e-12      23     162 ..      50     195 ..      33     223 .. 0.86
   2 !   13.1   0.0   1.3e-05    0.0055     390     520 ..     429     559 ..     411     563 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 4.3e-15
   TIGR02344  23 qaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahp....aakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvd.vedeakllklvkssigt.kfvsr 162
                 +  + va+ ++ tlGpk    +l    G+  + ndG +i rei +  p     ak + e+++  d++ GdGtt+  i++  + ++    +   i p+ + r+ +ka + + ++++e++ p+  +ed ++++++ + s+   +++++
  MMETSP1061-20121228|3734_1  50 DGINQVANAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIILGDPeenvGAKLIQEVAQKSDNKAGDGTTTSTIMTQAITNNGMRAVTSGINPVALNRGIRKAATLVTTKIKEVAKPITgIEDLKDVATIASGSVEMgRIIAQ 195
                 455689*************999999********************998444459999***************************************************************95499999999998888764144555 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.3e-05
   TIGR02344 390 dalavarnvllepklvpGGGatelavsvklkkkakkl..egveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddiv 520
                 dal+ ++    e  lvpGGGa   ++  k +++  +   ++ e+   +   +a+ +    +++n+G++    l+++++  +++   ++G d  + +  d+ e+g+ +p  v  ++i  +   a l+l  + +v
  MMETSP1061-20121228|3734_1 429 DALNSVQS-ARELGLVPGGGACLAHIQLKYSEEILDAmdNDDERAGAQILLNAMGAPCMQVAENAGIEGAVVLSKVQTLGEEK-GFEWGWDAGSMEYCDLYERGVVDPAKVTINAIENSASVAGLVLTTECLV 559
                 55555544.345679******998888777776554411345566677788899999999*****************998777.69*******************************9999999999877666 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   2.3   3.1e-16   1.3e-13      11     133 ..      42     168 ..      33     210 .. 0.83
   2 ?   -1.6   0.1      0.44   1.8e+02     310     351 ..     318     358 ..     302     375 .. 0.72
   3 !    5.7   0.1    0.0027       1.1     388     516 ..     427     548 ..     407     565 .. 0.77

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 3.1e-16
   TIGR02340  11 edvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehP....aakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikekla 133
                 ed r++ v  + +van+vk +lGP G + +l  + G   i ndG ti +++ + +P     ak++ e+aq+ d+  GdGtt+  i++ ++ +++   v++ + P ++  G r a+    + ike  +
  MMETSP1061-20121228|3734_1  42 EDSRRKLVDGINQVANAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIILGDPeenvGAKLIQEVAQKSDNKAGDGTTTSTIMTQAITNNGMRAVTSGINPVALNRGIRKAATLVTTKIKEVAK 168
                 56788899999*****************************************99995444599************************************************9999888888877654 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.44
   TIGR02340 310 edlkriakatGatlvssladleGeetleasllGeaeevveer 351
                 e  + ia atGa+ v+    +  + ++   +lG+a+++v ++
  MMETSP1061-20121228|3734_1 318 EYTQDIAIATGASFVAEELGITLD-SVTLDMLGTADRIVVAK 358
                 556789999999999876666554.44555799999998765 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0027
   TIGR02340 388 lhdalcvvkrtleskkvvaGgGaveaalsi.yleelattlgsreqlaiae.faealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfatea 516
                   dal  v+ + e + +v+GgGa+ a + + y ee+  ++++ ++ a a+   +a+ +   ++a na+ + + +++k+++l +++           +G d  + + +d  e Gv++Pa   +  ++ +   
  MMETSP1061-20121228|3734_1 427 YEDALNSVQSARELG-LVPGGGACLAHIQLkYSEEILDAMDNDDERAGAQiLLNAMGAPCMQVAENAGIEGAVVLSKVQTLGEEK--------GFEWGWDAGSMEYCDLYERGVVDPAKVTINAIENSASV 548
                 568888888777765.79******99999846799999**9998888776257889888899********999998887765433........33469999999999999999999998888887765544 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.9     2e-14   8.2e-12      22     136 ..      51     167 ..      35     259 .. 0.81
   2 !    8.6   0.1   0.00032      0.13     366     511 ..     412     558 ..     393     564 .. 0.72

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 2e-14
   TIGR02341  22 gaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksial....dnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksa 136
                 g   v + vk tlgpkg + +l  +    +  + ndg ti ++i l    +n  ak++ ++++  d++ gdgtt+ t+++  + ++  + v   i p ++  g r+a++  +  +k+ a
  MMETSP1061-20121228|3734_1  51 GINQVANAVKVTLGPKGRNVVLERNYG--APEIVNDGVTIAREIILgdpeENVGAKLIQEVAQKSDNKAGDGTTTSTIMTQAITNNGMRAVTSGINPVALNRGIRKAATLVTTKIKEVA 167
                 55578999***********99988776..66778**********8843335778****************************************************9887766665543 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00032
   TIGR02341 366 lrgatqqildeaerslhdalavlsqtvkesrtvlgggca..ellmakaveeeaqkva.gkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdni 511
                 +  at+  l + +    dal   +q+ +e   v ggg++   + + k  ee  + ++   +    +   +a+      +a+nag++ a +++k+++   e   + g d    e +dl ++g+v+  k+    +  +a  a ++l  + +
  MMETSP1061-20121228|3734_1 412 VGAATETELKDKKLRYEDALNS-VQSARELGLVPGGGAClaHIQL-KYSEEILDAMDnDDERAGAQILLNAMGAPCMQVAENAGIEGAVVLSKVQTLGEEKGFEWGWDAGSMEYCDLYERGVVDPAKVTINAIENSASVAGLVLTTECL 558
                 5567777777777777888875.4667777777777754113333.333332222220233334455667777777789******************9999999*************************99998888888888876655 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.9   2.6e-12   1.1e-09      23     137 ..      50     168 ..      31     219 .. 0.81
   2 ?   -0.5   0.0      0.18        75     101     135 ..     236     271 ..     230     308 .. 0.68
   3 !   12.4   0.0   2.1e-05    0.0088     379     518 ..     414     554 ..     396     562 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.6e-12
   TIGR02347  23 naakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhP....tasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklki 137
                 ++ + +++ +k  lGPkG   +l    G+ ++  dG ++ +e+ + +P     a+li  +a   d+ +GdGtt++ i+ +++ +   r ++ g+ P  l  G+  a + +   ++++  
  MMETSP1061-20121228|3734_1  50 DGINQVANAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIILGDPeenvGAKLIQEVAQKSDNKAGDGTTTSTIMTQAITNNGMRAVTSGINPVALNRGIRKAATLVTTKIKEVAK 168
                 5556678889***********************************99944445999************************************************999888877777744 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.18
   TIGR02347 101 lkqaerlieeglhPrilteGleiak.kealeflekl 135
                 +k  er i e + Pril++  +i + + ++ +le+l
  MMETSP1061-20121228|3734_1 236 VKDQERQIGELVNPRILVTDAKIDNvNDVVPLLEQL 271
                 677788888888888888776665413345555555 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 2.1e-05
   TIGR02347 379 gpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksv..kGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlll 518
                 ++++ +lk  k    d l +v+ a  + ++v+G ga  + +  k  ee  ++  +  ++ g +++ +a+      ++en+G +   vl k++   +e++   g d    e ++  ++g+ d  +v  ++++ ++ +a  +l 
  MMETSP1061-20121228|3734_1 414 AATETELKDKKLRYEDALNSVQSAR-ELGLVPGGGACLAHIQLKYSEEILDAmdNDDERAGAQILLNAMGAPCMQVAENAGIEGAVVLSKVQTLGEEKGFEWGWDAGSMEYCDLYERGVVDPAKVTINAIENSASVAGLVLT 554
                 6677788888888899999999875.5789999999888877777766554412456899*********999999*******************99999********************************99999976654 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.3     1e-11   4.3e-09      16     155 ..      41     183 ..      34     216 .. 0.85
   2 !    8.0   0.0   0.00044      0.18     366     514 ..     409     556 ..     400     565 .. 0.77

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 1e-11
   TIGR02346  16 leeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhP....aakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikal 155
                  e++  k ++ i ++++ ++ +lGP+g+n ++        + nD +ti re+ +  P     akl+ +++++ +++ GDgt    +++ ++ ++  + +  G++p+ + +G  +a+  ++  ++e+    ++ +e+ +++ ++ 
  MMETSP1061-20121228|3734_1  41 REDSRRKLVDGINQVANAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIILGDPeenvGAKLIQEVAQKSDNKAGDGTTTSTIMTQAITNNGMRAVTSGINPVALNRGIRKAATLVTTKIKEVA-KPITGIEDLKDVATIA 183
                 56667788999******************9998888888899***********9999544459******************************************************9999999965.4555555555555544 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00044
   TIGR02346 366 tivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkk..yaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvD 514
                  i +  +t++ l d     +D +n+v+++ ++  l+pG+ga  +++  k  +  +    ++ e+   +   +a+ +    +aenaG++   vlsk+ +  +++  + g d    s++  d+ e+ + D  +  + ai+ ++  a  vL  +
  MMETSP1061-20121228|3734_1 409 RIKVGAATETELKDKKLRYEDALNSVQSA-RELGLVPGGGACLAHIQLKYSEeiLDAMDNDDERAGAQILLNAMGAPCMQVAENAGIEGAVVLSKVQTLGEEKGFEWGWDAG--SMEYCDLYERGVVDPAKVTINAIENSASVAGLVLTTE 556
                 55566789999999999999*****9985.8889****999755554444331033333444455566777888888899*******************9998888888755..55558***********999999999998888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.19s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 1798.74
//
Query:       MMETSP1061-20121228|3732_1  [L=804]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 2165.70
//
Query:       MMETSP1061-20121228|3741_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.34
# Mc/sec: 186.34
//
Query:       MMETSP1061-20121228|3739_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 1016.80
//
Query:       MMETSP1061-20121228|3736_1  [L=1096]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1096 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.43
# Mc/sec: 3364.19
//
Query:       MMETSP1061-20121228|3742_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-10   39.3   3.8    1.1e-10   39.3   2.6    1.9  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.9e-08   31.0   0.0      3e-08   30.4   0.0    1.2  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   2.6   5.3e-14   1.1e-10       3      87 ..      32     134 ..      30     184 .. 0.68
   2 ?   -1.5   0.1      0.13   2.7e+02      92     120 ..     464     495 ..     440     521 .. 0.53

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 5.3e-14
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkg......ekeaeekfkeine.......AyevLsdeekraqYDqfghagleggaggggagfegfea.....s 87 
                 Y++L + +dA+++e+ ++Yr+l+ ++HPD+ +        +++e+ + ei+e       A++vL d+  r +YD +g++g+e   + ++++ +++++     +
  MMETSP1061-20121228|3742_1  32 YSLLNLRRDATTDEVHRSYRSLSTTFHPDKVRLrrrtpdAEQNEQELEEIQEtflqfkkAHDVLIDPVLRLAYDCYGEDGVELIRKVQQQQRDEKTRreeaaR 134
                 99***************************8653333333444555555554333333339********************99865443333322222333330 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.13
   TIGR02349  92 igdifeeffgggggsgrr...rskarrgedle 120
                  + +++++f+++ +++++   ++++++ ++ +
  MMETSP1061-20121228|3742_1 464 WQATLSSLFSRRSNNTQQqqqQQRQQQASQQH 495
                 34445555554444222211133333333333 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.4e-11     3e-08       4      72 ..      31     113 ..      29     122 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.4e-11
   TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPD....rnkaadaaki...faeine.......andvLsnPkkraryDkyGhDGvD 72 
                  y  L++ rDa  +e+ +++r L+  +hPD    r + +da++      ei e       a+dvL +P  r  yD yG DGv+
  MMETSP1061-20121228|3742_1  31 LYSLLNLRRDATTDEVHRSYRSLSTTFHPDkvrlRRRTPDAEQNeqeLEEIQEtflqfkkAHDVLIDPVLRLAYDCYGEDGVE 113
                 5999**************************44333456999875111444544555555589*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.18s 00:00:00.65 Elapsed: 00:00:00.47
# Mc/sec: 2578.00
//
Query:       MMETSP1061-20121228|3743_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   14.7   0.1      0.008   14.1   0.1    1.3  1  TIGR03141 cytochro_ccmD: heme exporter protein CcmD
  ------ inclusion threshold ------
      0.025   12.7   0.0      0.044   11.9   0.0    1.4  1  TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
       0.22    7.7   9.3        0.3    7.3   6.4    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR03141  cytochro_ccmD: heme exporter protein CcmD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   5.9e-06     0.008      11      39 ..     296     324 ..     295     327 .. 0.93

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.9e-06
   TIGR03141  11 WlaYgitalvLaglivwslldrrrllrel 39 
                 Wl +g+t++vLa  i+ +++d+++l +e 
  MMETSP1061-20121228|3743_1 296 WLGVGVTIVVLATGILIIVRDQKKLSKEE 324
                 999**********************9986 PP

>> TIGR03142  cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   3.2e-05     0.044       2      59 ..     295     352 ..     294     365 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.2e-05
   TIGR03142   2 FwilaalltlvalllvllPllrakrakatadrdelnlavYrdrLaELerdeaegllde 59 
                 +w+ + + ++v ++ +l+ +  +k+ +++++++ ++ +vY++r  E ++d +++  de
  MMETSP1061-20121228|3743_1 295 LWLGVGVTIVVLATGILIIVRDQKKLSKEEASTGEESSVYEERNHENDEDDENDENDE 352
                 8************************99999999****************999886555 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.4   0.00022       0.3     308     397 ..     314     404 ..     304     422 .. 0.34

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00022
   TIGR02442 308 hRrrrkpfeee..qekeekkleekkeeakpdeekedeseekekeeskkqe.eeepgkddekeedekeeaeeeaesaeevalepagkifrvkll 397
                  R ++k ++ee   ++e++  ee+++e+++d e+ +++e++e+ e+ +++ ++++++dd++++de++  +++    e+ +  + g++++  ++
  MMETSP1061-20121228|3743_1 314 VRDQKKLSKEEasTGEESSVYEERNHENDEDDENDENDEDDEDIEDDNHSdSDSSENDDDENDDENNGDSGNID--ENGTDLECGTSVEESST 404
                 55554444444222222222222222222222222222222222222222133333333333333333222222..22222233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1934.32
//
Query:       MMETSP1061-20121228|3738_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2928.20
//
Query:       MMETSP1061-20121228|3744_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1215.90
//
Query:       MMETSP1061-20121228|3747_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   29.0   0.1    2.5e-07   28.3   0.1    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    1.5e-07   29.1   0.0      3e-07   28.1   0.0    1.5  1  TIGR00537 hemK_rel_arch: putative methylase
    3.2e-05   21.0   0.1    5.6e-05   20.2   0.0    1.4  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    0.00014   19.2   0.1    0.00023   18.5   0.1    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0013   16.9   0.1     0.0044   15.1   0.0    1.9  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0028   14.8   0.0     0.0053   13.9   0.0    1.4  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0078   13.5   0.0      0.019   12.2   0.0    1.6  2  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
  ------ inclusion threshold ------
      0.031   11.9   0.0       0.12    9.9   0.0    1.8  2  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   4.9e-10   2.5e-07     161     210 ..     189     237 ..     176     286 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 4.9e-10
   TIGR00406 161 kkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdl 210
                  +++++G+G G++siaa++ ga++v+a D +pla++ +r  ++   v+ +
  MMETSP1061-20121228|3747_1 189 LSILELGTGTGLVSIAAAMGGAKRVIATDYEPLALDLTRYAASE-AVNTN 237
                 5789*******************************999864432.22222 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   5.9e-10     3e-07      13      67 ..     180     235 ..     171     336 .. 0.70

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 5.9e-10
   TIGR00537  13 knlrel.knddvleiGaGtGlvairlkekgk.kivatdinPfavkllkenaklnnve 67 
                  +lr+   +  +le+G+GtGlv+i+++  g+ +++atd +P a  l++  a  ++v+
  MMETSP1061-20121228|3747_1 180 PDLRDNlSSLSILELGTGTGLVSIAAAMGGAkRVIATDYEPLALDLTRYAAS-EAVN 235
                 455554044469*************99998879************9998554.2222 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.1e-07   5.6e-05     112     180 ..     185     258 ..     172     305 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.1e-07
   TIGR00536 112 qeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaee......Naeklkleerveliqsnlleslak 180
                 +   + il+lgtG+G +++a A+  + + via D  + al + +       N++++ +++  + i ++ll+  a 
  MMETSP1061-20121228|3747_1 185 NLSSLSILELGTGTGLVSIAAAMGGA-KRVIATDYEPLALDLTRYaaseavNTNNNTINGITNTIETRLLDMCAL 258
                 555678******************99.9*************9763222344888888888888888888887665 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.1   4.4e-07   0.00023      88     138 ..     187     236 ..     171     279 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.4e-07
   TIGR03534  88 eklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglk 138
                 ++l++l+lgtG+G + +a a      +via+D ++ Al+++r  a++   +
  MMETSP1061-20121228|3747_1 187 SSLSILELGTGTGLVSIAAAMG-GAKRVIATDYEPLALDLTRYAASEAVNT 236
                 3689***********9998776.7789*************99887765444 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.6e-06    0.0044      22      82 ..     190     249 ..     172     259 .. 0.81
   2 ?   -3.9   0.0       6.8   3.5e+03      51      64 ..     292     305 ..     285     308 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.6e-06
   TIGR02469  22 vllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdapkae 82 
                  +l+ G GtG v+i aa      rv+a + ++ al+l++  + + +  n+++++g  +++e
  MMETSP1061-20121228|3747_1 190 SILELGTGTGLVSIAAAMGGA-KRVIATDYEPLALDLTRYAASEAVNTNNNTINGITNTIE 249
                 6899**********8875544.69*******************999999999998555544 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 6.8
   TIGR02469  51 rneealelieeNlr 64 
                   + a+e +++N+r
  MMETSP1061-20121228|3747_1 292 MAHRAIEALRQNCR 305
                 55677788888886 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     1e-05    0.0053      46     106 ..     184     248 ..     164     256 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1e-05
   TIGR01983  46 kkleglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplk...kieyelksv 106
                 ++l++l++l++G+G Gl+s + a  ga+ v++ D    +++  ++ a++   +   +i+  ++++
  MMETSP1061-20121228|3747_1 184 DNLSSLSILELGTGTGLVSIAAAMGGAKrVIATDYEPLALDLTRYAASEAVNTnnnTINGITNTI 248
                 7899***********************99*****9988888777665543222223555555555 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.6e-05     0.019      51     104 ..     184     238 ..     172     252 .. 0.83
   2 ?   -3.7   0.0       2.7   1.4e+03     120     147 ..     275     301 ..     272     313 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.6e-05
   TIGR02021  51 dslkGkkvlDAGCGtGllsielAkrGa.ivkavDiseklvelarkraekedeaen 104
                 d+l+   +l+ G GtGl+si  A  Ga +v a D  +  ++l+r  a+++ +++n
  MMETSP1061-20121228|3747_1 184 DNLSSLSILELGTGTGLVSIAAAMGGAkRVIATDYEPLALDLTRYAASEAVNTNN 238
                 4589999*******************94699***999888888888877766655 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2.7
   TIGR02021 120 DavvalDvlihYpaediakalerlaslt 147
                 D+vva D +++ p+ +ia a   + +l 
  MMETSP1061-20121228|3747_1 275 DVVVAAD-IMYEPKTGIAMAHRAIEALR 301
                 7777777.34667777666666665554 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00024      0.12      32      79 ..     185     231 ..     172     257 .. 0.71
   2 ?   -1.1   0.0      0.55   2.8e+02      40      72 ..     349     379 ..     346     380 .] 0.87

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00024
   TIGR02072  32 kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls 79 
                 ++   ++L++G GtG+++ a +++  ++++ia+D  +  l   + + s
  MMETSP1061-20121228|3747_1 185 NLSSLSILELGTGTGLVSIA-AAMGGAKRVIATDYEPLALDLTRYAAS 231
                 456779*********77665.566666679999988777766665555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.55
   TIGR02072  40 diGcGtGiltrallkrfpqaelialDiseemle 72 
                 d+ cG G  +  ++++ ++ ++++lD+ + ml+
  MMETSP1061-20121228|3747_1 349 DLICGKG--STSVSETPQELSVTLLDLKPAMLR 379
                 6679999..888999999999*******99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.65
# Mc/sec: 771.63
//
Query:       MMETSP1061-20121228|3745_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1543.26
//
Query:       MMETSP1061-20121228|3752_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   12.0   6.9     0.0028   13.9   2.3    1.7  2  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.9   2.3   6.8e-07    0.0028      21     113 ..      66     158 ..      43     166 .. 0.71
   2 ?   -1.0   0.1     0.021        85     125     151 ..     210     235 ..     208     249 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.8e-07
   TIGR04154  21 avisegevlfsgnDpwYhlReieytvenfpn..tlwFDpytnyPyGtevgfgpLfdllvAtlalivGlgapsqetietvalllpvvlgalvvipv 113
                 ++i+e   ++ ++Dp++++R +ey+ e+  +    wFD +  yP G+ vg  ++++ +  t+  +      ++ +++ v+ ++p+ +ga++ ++v
  MMETSP1061-20121228|3752_1  66 SAIDEYGPVIHEYDPYFNFRATEYLHEHGAKkfFQWFDYMSWYPLGRPVG-TTIYPGMQFTAVFVK-RYLLQSWSLNDVCCYIPAWFGAIASVLV 158
                 23444458999***************998762257*************99.788887776666665.5566677778888888888888765554 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.021
   TIGR04154 125 tGllaalllavlpgqflsrslvGflDH 151
                 ++  a  ++a++p++++ rs+ G +D 
  MMETSP1061-20121228|3752_1 210 CACCALGMMAIVPAHLM-RSVGGGYDN 235
                 67788999********9.999887774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1269.13
//
Query:       MMETSP1061-20121228|3753_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.22
# Mc/sec: 359.97
//
Query:       MMETSP1061-20121228|3756_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   13.4   0.0     0.0039   13.3   0.0    1.0  1  TIGR00344 alaS: alanine--tRNA ligase
  ------ inclusion threshold ------
      0.014   11.4   0.0      0.016   11.2   0.0    1.1  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.9e-06    0.0039     521     567 ..       6      52 ..       1      56 [. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-06
   TIGR00344 521 ngvvvhvgeleegklkvgdkvkavidekrRleikknHsatHllhaal 567
                 n+   ++ +   ++l +g + + ++d++rR+ +++ H+a H++ +a+
  MMETSP1061-20121228|3756_1   6 NNSSSSFNDDSVACLWIGRTATVTVDKERRKLLSECHTAGHVVDSAM 52 
                 5555666777888999****************************997 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.9e-06     0.016     578     608 ..      23      53 ..      12      58 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.9e-06
   TIGR03683 578 geevkgeideerRlrlmrhHtatHvllaaar 608
                 g++ + ++d+erR  l + Hta Hv+ +a+ 
  MMETSP1061-20121228|3756_1  23 GRTATVTVDKERRKLLSECHTAGHVVDSAMA 53 
                 6778899*******************88875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 501.56
//
Query:       MMETSP1061-20121228|3757_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 567.55
//
Query:       MMETSP1061-20121228|3758_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1085.72
//
Query:       MMETSP1061-20121228|3754_1  [L=1028]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-50  167.9   1.9    3.9e-41  138.9   0.0    2.6  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    4.1e-28   96.2  11.0    3.3e-20   70.2   3.3    4.0  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    1.2e-14   51.9   0.0    8.9e-09   32.6   0.0    3.2  3  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
      2e-09   35.3   0.0    3.7e-09   34.4   0.0    1.5  1  TIGR01387 cztR_silR_copR: heavy metal response regulator
    8.3e-09   32.4   6.4    6.8e-07   26.0   4.4    2.2  1  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
      3e-08   30.4   0.0    6.3e-08   29.4   0.0    1.5  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    3.1e-08   30.2   0.7    6.9e-06   22.4   0.1    3.0  2  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
    6.6e-06   23.4   0.0      1e-05   22.8   0.0    1.3  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    6.9e-06   22.9   0.0      1e-05   22.3   0.0    1.2  1  TIGR01818 ntrC: nitrogen regulation protein NR(I)


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.8   6.1e-10   2.8e-07     462     566 ..     570     694 ..     560     721 .. 0.73
   2 !  138.9   0.0   8.6e-44   3.9e-41     570     815 ..     734    1027 ..     704    1028 .] 0.85

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 6.1e-10
   TIGR02956 462 rAKSaFLAtmSHEiRTPlnGvlGTleLLa...dtkLtseqqk..............ylqvinr...SGesLldiLnDiLDySkiEaGhlsiserafdlskLledvlhlmesraqekgiqLsleid 566
                 +AK  F+   SHE+RTPln v   l+L++   ++kL s+ ++               l+++++   S +s  ++LnD L y kiE  +ls++   + +++L++++ + ++  a++k i Lsl  +
  MMETSP1061-20121228|3754_1 570 KAKRHFMRYVSHEVRTPLNSVCMGLNLMQeeiQSKLGSTEHDgsknasitieeatsWLNLSRDvhiSAQSATNVLNDFLNYDKIESRQLSLELSVIPIQALISEISKEFVLPAHDKAIHLSLLQE 694
                 89*******************999***984445788776543111111111111113444432333889999***********************************999999999999986433 PP

  == domain 2    score: 138.9 bits;  conditional E-value: 8.6e-44
   TIGR02956  570 pevlqgDlsrirQvliNlvgNaiKFTd.rGsvvlrvslndds......................llfeVeDtGvGiaeeeqetlFkaftqae..grkksgGTGLGLAiskrlveamdgelsveSe.lgkGScFafelplergkkaeksatkevidvppa.......................rvLlvEDNevnamvaqglleklGhkvtlaesgksA....leclee.kaFDlallDinLpDtdGvtLlkqLkeleeakeelkfiavsAhvfnedvekylaagFdgflaKPlsekqLvat 815 
                  ++v++gD  r+ Qv+ N+++NaiKFT  +Gs++++++    +                      + +eV+DtG G+ ee+ +t+F++ +q +    +k gG GLGL i+k +v+  +g+l+v+Se lgkGS F  +lpl  +k++e   +   i v+p                        r+L+v+D ++n ++ + ll k Gh+v +ae+g +A    +e ++e k++D +l+D+++p +dG t ++q++ +e+  +   +++++ +v+ +dve++   g dg+l KP + ++L ++
  MMETSP1061-20121228|3754_1  734 DQVVVGDRARLSQVVRNVISNAIKFTPiKGSITVKTTWMVATvgestsinlqdgrvedlyqtgwIQLEVTDTGPGMTEEQLATVFESGVQFNanKNQKGGGSGLGLFIAKGIVDQHNGTLTVDSEgLGKGSSFLCKLPLF-CKPKEPLIE--NIPVAPRdetitervtsswldtqnendlcyRILVVDDAPMNRKLLTRLLMKRGHHVDMAEDGLEAyervKEQMKEgKRYDTILMDFQMPVMDGPTATQQIR-MEGCDS--FIVGITGNVLPQDVEHFKICGADGVLGKPFQVEELESM 1027
                  57999*********************659*****976555444556788888899********99*********************9999886234567899**********************968***********96.666655544..45555556677777889999999***************************************999333345667789**********************97.677755..689*******************************9876 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.7   3.9e-08   1.8e-05      98     217 ..     556     691 ..     546     703 .. 0.71
   2 !   70.2   3.3   7.3e-23   3.3e-20     173     332 ..     688     869 ..     684     870 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.9e-08
   TIGR02966  98 llvarDvtklkrleqmRrdFvanvsHELrtPLtvlkGyletleeep.e....eddeaaekalelmee.............qskrmqsLvedLltLsrlEsaakekeeekvdvaelleelkkeaealseekehqielev 217
                  lv r  +   +l + +r F+  vsHE rtPL ++   l++++ee  +    ++++ +++a  ++ee              ++   ++++d+l+  ++Es++ + e + + +++l++e+ ke+   +++k +++  ++
  MMETSP1061-20121228|3754_1 556 FLVRREFSAKAELLKAKRHFMRYVSHEVRTPLNSVCMGLNLMQEEIqSklgsTEHDGSKNASITIEEatswlnlsrdvhiSAQSATNVLNDFLNYDKIESRQLSLELSVIPIQALISEISKEFVLPAHDKAIHL--SL 691
                 578889999999*********************9998899998865221111223333333333333011111111111145666799**********************************999999995544..44 PP

  == domain 2    score: 70.2 bits;  conditional E-value: 7.3e-23
   TIGR02966 173 tLsrlEsaakekeeekvdvaelleelkkeaealseekehqielevdaavkvkgdeeeLrsalsNLveNAikytpeggeitvrwee.............e........eeg.aelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSe.lgkGstFsvk 332
                  Ls l ++ k +e+++v+ ++ ++++k+++ +++ ++  qi+ ++ ++  v gd+ +L ++++N+++NAik+tp +g+itv+ +              +        ++g ++l+v+DtG+G+ +e+l  ++E     +++++++ gG+GLGL I k ++ +h+++L+++Se lgkGs+F +k
  MMETSP1061-20121228|3754_1 688 HLSLLQEKVKAAETTPVTNSR-VSKVKNSIMKAEVDHIDQIQSQLLEDQVVVGDRARLSQVVRNVISNAIKFTPIKGSITVKTTWmvatvgestsinlQdgrvedlyQTGwIQLEVTDTGPGMTEEQLATVFESGVQFNANKNQKGGGSGLGLFIAKGIVDQHNGTLTVDSEgLGKGSSFLCK 869
                 678888877777777777555.7899999999999999*******99999*****************************99754311111111112221111111112234789*********************************************************978******997 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.067        30     243     260 ..     574     591 ..     569     600 .. 0.82
   2 !   13.7   0.0   1.1e-05    0.0048     345     379 ..     735     769 ..     725     777 .. 0.91
   3 !   32.6   0.0   1.9e-11   8.9e-09     382     446 ..     794     858 ..     780     871 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.067
   TIGR01386 243 qFsadlAHelRtPltnLl 260
                 +F   + He+RtPl++  
  MMETSP1061-20121228|3754_1 574 HFMRYVSHEVRTPLNSVC 591
                 5777799*******9875 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 1.1e-05
   TIGR01386 345 aevegdaqlfrRalsNLlsNAlrytpegstievrv 379
                  +v gd++ +  ++ N++sNA+++tp  + i+v+ 
  MMETSP1061-20121228|3754_1 735 QVVVGDRARLSQVVRNVISNAIKFTPIKGSITVKT 769
                 5799****************************986 PP

  == domain 3    score: 32.6 bits;  conditional E-value: 1.9e-11
   TIGR01386 382 radevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaesa 446
                 + + ++++v++tg+g+ ee+l  +F+     +a +++++ g+GLGL I + iv  H G++ ++s+
  MMETSP1061-20121228|3754_1 794 QTGWIQLEVTDTGPGMTEEQLATVFESGVQFNANKNQKGGGSGLGLFIAKGIVDQHNGTLTVDSE 858
                 667899*********************************************************94 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   8.2e-12   3.7e-09       1     106 [.     914    1024 ..     914    1027 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 8.2e-12
   TIGR01387    1 ilvvedeqktaeylqqGlsesGyvvdivsnGrdGlh.....laekddydliildvmlpgldGwevlkalresaketpvllltardevadkvkGlel.Gaddylvkpfefael 106 
                  ilvv+d +   + l++ l + G+ vd++++G +  +     + e + yd i++d ++p +dG +  +++r ++ +  ++ +t +  + + v  +++ Gad  l kpf+  el
  MMETSP1061-20121228|3754_1  914 ILVVDDAPMNRKLLTRLLMKRGHHVDMAEDGLEAYErvkeqMKEGKRYDTILMDFQMPVMDGPTATQQIRMEGCDSFIVGITGN-VLPQDVEHFKIcGADGVLGKPFQVEEL 1024
                  89*****************************9987521121555578***********************99999977777765.4556677777449**********9998 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   4.4   1.5e-09   6.8e-07     542     679 .]     706     871 ..     685     871 .. 0.70

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.5e-09
   TIGR02916 542 avdlvdllervieskraqkprievsvdkdlevradrerlervlghLvqNAleATeeeGkVkir.......ve........r.......ekeaavieieDsGqGmseeFirerL......FkPFdttKkaGmGiGvyesreyveelGGeieveSt.pgkGtiftlvlP 679
                    ++++ + +++ +  +  +i+ ++ +d  v  dr rl++v+ +++ NA+  T+ +G+++++       v                 +++++++e++D+G Gm+ee + + +      F+  +  K+ G G+G++ ++ +v ++ G+++v+S+  gkG+ f   lP
  MMETSP1061-20121228|3754_1 706 NSRVSKVKNSIMKAEVDHIDQIQSQLLEDQVVVGDRARLSQVVRNVISNAIKFTPIKGSITVKttwmvatVGestsinlqDgrvedlyQTGWIQLEVTDTGPGMTEEQL-ATVfesgvqFNANKNQKGGGSGLGLFIAKGIVDQHNGTLTVDSEgLGKGSSFLCKLP 871
                 4456667777777777778889999999999****************************998622222221111111111122222224468899**********9974.444011111555556667899**********************9459***9998887 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   1.4e-10   6.3e-08     420     481 ..     794     858 ..     715     871 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 1.4e-10
   TIGR02938 420 eddlirveiedsGPGiPadlrlkvfeP...ffttkassrkhvGmGlavaqeivakhaGlidvddd 481
                 +   i++e++d+GPG+ ++    vfe    f + k  ++ + G+Gl +a+ iv +h+G + vd++
  MMETSP1061-20121228|3754_1 794 QTGWIQLEVTDTGPGMTEEQLATVFESgvqFNANKNQKGGGSGLGLFIAKGIVDQHNGTLTVDSE 858
                 556799********************64547788888899***********************86 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.028        13     488     516 ..     575     603 ..     561     622 .. 0.86
   2 !   22.4   0.1   1.5e-08   6.9e-06     588     703 .]     734     871 ..     690     871 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.028
   TIGR03785 488 lssrLsHElrTPvAvVrsSLenLelqkle 516
                 + +  sHE+rTP+  V   L+ ++++ ++
  MMETSP1061-20121228|3754_1 575 FMRYVSHEVRTPLNSVCMGLNLMQEEIQS 603
                 55678*********999999988877665 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 1.5e-08
   TIGR03785 588 dlvlrgspellaQllDKlvdNaieFskedglIevslk.............ekkke.........alltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeikaeNraqedgvvfevslp 703
                 d+v+ g    l Q++  +++Nai F++ +g I+v+ +              ++ +         + l+v+  Gp + e+    +F+s v   a+k+q+    GlGL+I++ i+d H+g +++  +   +g  f  +lp
  MMETSP1061-20121228|3754_1 734 DQVVVGDRARLSQVVRNVISNAIKFTPIKGSITVKTTwmvatvgestsinLQDGRvedlyqtgwIQLEVTDTGPGMTEEQLATVFESGVQFNANKNQKGGGSGLGLFIAKGIVDQHNGTLTVDSEGLGKGSSFLCKLP 871
                 45556667778888888888888888888888776432111111111111111111111112225689***************************************************9998877777777766665 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.3e-08     1e-05       4     112 ..     913    1024 ..     910    1027 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2.3e-08
   TIGR02154    4 rilvvedeeairellaynlekegyevveaedaeealalikeelP.....dlilldWmlpgtsGielarrlrkeeetreiPiimltargeeedrvrgletGaddyvvkPfspkel 112 
                  rilvv+d +  r+ll+  l k+g++v  aed+ ea  ++ke++      d il+d+ +p + G   ++++r e       i+ +t  +  +d  +    Gad  + kPf ++el
  MMETSP1061-20121228|3754_1  913 RILVVDDAPMNRKLLTRLLMKRGHHVDMAEDGLEAYERVKEQMKegkryDTILMDFQMPVMDGPTATQQIRMEGCD--SFIVGITGNVLPQDVEHFKICGADGVLGKPFQVEEL 1024
                  8**************************************99864333339********************998765..467888999998887777789***********9998 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.3e-08     1e-05       1     106 [.     914    1024 ..     914    1027 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.3e-08
   TIGR01818    1 vlvvdddrsirtvlekalaeaglevrtfdnaasvlralare.....qpdllitdvrmPgedgldllkkikkrrPklpvivmsahsdldaavkayq.rGafeylpkPfdldea 106 
                  +lvvdd    r +l++ l + g++v+  +++ +++++++++     + d ++ d +mP +dg +  ++i+    +   iv  + + l + v+ ++  Ga   l kPf ++e+
  MMETSP1061-20121228|3754_1  914 ILVVDDAPMNRKLLTRLLMKRGHHVDMAEDGLEAYERVKEQmkegkRYDTILMDFQMPVMDGPTATQQIRMEGCDS-FIVGITGNVLPQDVEHFKiCGADGVLGKPFQVEEL 1024
                  79*****************************999999976533223569********************9888775.56666678999999999846999*********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.64u 0.18s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 2188.46
//
Query:       MMETSP1061-20121228|3763_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 850.60
//
Query:       MMETSP1061-20121228|3761_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1860.13
//
Query:       MMETSP1061-20121228|3768_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       413  (0.100683); expected 82.0 (0.02)
Passed bias filter:                      225  (0.0548513); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 763.65
//
Query:       MMETSP1061-20121228|3772_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.43
# Mc/sec: 2234.61
//
Query:       MMETSP1061-20121228|3769_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-53  178.3   0.6    9.2e-46  154.3   0.2    2.5  2  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
    3.8e-09   33.7   1.0    9.4e-06   22.6   1.0    2.1  2  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    9.1e-05   19.1   3.6    0.00012   18.8   1.6    1.7  2  TIGR03966 actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
    0.00026   17.7   0.2       0.13    8.8   0.3    2.2  2  TIGR02814 pfaD_fam: PfaD family protein
     0.0013   15.9   0.8      0.013   12.6   0.4    2.2  2  TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein
     0.0038   14.0   0.3     0.0061   13.3   0.2    1.2  1  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
  ------ inclusion threshold ------
      0.012   12.4   0.8       0.02   11.7   0.5    1.2  1  TIGR02708 L_lactate_ox: L-lactate oxidase


Domain annotation for each model (and alignments):
>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3   0.2   1.6e-48   9.2e-46       2     235 ..      73     323 ..      72     331 .. 0.90
   2 !   21.6   0.0   4.1e-08   2.4e-05     258     305 ..     377     424 ..     343     426 .. 0.87

  Alignments for each domain:
  == domain 1    score: 154.3 bits;  conditional E-value: 1.6e-48
   TIGR03151   2 tkltelleieyPilqGgmawvataelaaavseaGGlGiigaGnapkdvvkkeikkvkel....td...........kPfGvnilllspfvdelvdlvieekvpvvttGaGnPgkyierlkeagvkviPvvasvala.krleklGadaviaeGmeaGGhiGelttlalvpqvvdav.siPviaaGGiadgrGlaaalalGaeavqlGtrflvakesevhpnykekvlkakdrdtvvtgrkvGhpvrvlknkl 235
                 t++t+l++ ++Pi+  gm+w++t+el aavs+aGG+Gi+++G   +   ++ i++++el     +           +PfGv + ll p + e + + +ee+vp++ +  G      + l   g k++  v+    a + +   Gada+++ G+ea  h G++t+l+lvp +++   + P++aaGG a+grGl aalalGa+av +G+r+  +kes + ++ ke+++ a +  t+  ++  G p+rvl +  
  MMETSP1061-20121228|3769_1  73 TRITDLFGCDHPIVLPGMSWISTPELVAAVSNAGGVGILATGPLSACETRESIRRTRELlannNNnssssdagnkpRPFGVGVTLLMPGARENAIVALEEEVPIINVSLGKARWIRDGLDGYGGKLLATVTNREHAsRAIGDGGADALMVTGHEAAAHGGDVTSLVLVPSLAREFpDTPLVAAGGFANGRGLHAALALGADAVAMGSRMATTKESPLAEATKEAIVGADESHTIYGSNFDGIPARVLATDT 323
                 89********************************************99******999853322112333334444479********************************97666678999******9999887762668999****************************9986489*********************************************************************8765 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 4.1e-08
   TIGR03151 258 GalrkavveGdveeGsvmaGqiaglikeikpakeiieeilkeakevik 305
                  a+ +a v+Gd+++G   +Gq  g+i+++ +++++++ il+ea+ev +
  MMETSP1061-20121228|3769_1 377 EAIMAATVDGDLQRGVQFVGQCQGMIDDVPSVEDLVHRILEEAREVHE 424
                 578899**************************************9865 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00029      0.17      20      65 ..      68     113 ..      60     139 .. 0.83
   2 !   22.6   1.0   1.6e-08   9.4e-06     311     371 ..     232     293 ..     210     297 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00029
   TIGR01302  20 dvdlstrltkniklkiPvlssamDtvtesklaialAreGgiGviHk 65 
                    lstr+t+    + P++  +m  ++  +l +a+ ++Gg+G++  
  MMETSP1061-20121228|3769_1  68 GNTLSTRITDLFGCDHPIVLPGMSWISTPELVAAVSNAGGVGILAT 113
                 5679***************************************965 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.6e-08
   TIGR01302 311 pqitAvakvaeaaaks.gipviADGGirysGdivKalalGadavmlGsllagteEspgevvl 371
                 + +t ++ v + a++    p +A GG  +   +  alalGadav +Gs +a+t+Esp  + +
  MMETSP1061-20121228|3769_1 232 GDVTSLVLVPSLAREFpDTPLVAAGGFANGRGLHAALALGADAVAMGSRMATTKESPLAEAT 293
                 567777777777777536899************************************76655 PP

>> TIGR03966  actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   1.6     2e-07   0.00012     240     332 ..     185     279 ..     176     285 .. 0.88
   2 ?   -2.0   0.0      0.42   2.4e+02      14      32 ..     329     347 ..     305     381 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2e-07
   TIGR03966 240 awlreqwgG..pfllkGvlrvddarrav.dvGvtaisvsnhGGnnldgtpaairalpaiaeavGdqvevlldGGirrGsdvvkalalGaravliGr 332
                 +w+r+  +G    ll  v++ ++a ra+ d G++a+ v+ h      g  +++ ++p++a    d   ++  GG   G  +  alalGa av +G 
  MMETSP1061-20121228|3769_1 185 RWIRDGLDGygGKLLATVTNREHASRAIgDGGADALMVTGHEAAAHGGDVTSLVLVPSLAREFPDT-PLVAAGGFANGRGLHAALALGADAVAMGS 279
                 79998776422578999**********95689*****************************99886.67789********************9995 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.42
   TIGR03966  14 rakkrlpksvykaliagse 32 
                 ra+  lp  vy+a+ a+  
  MMETSP1061-20121228|3769_1 329 RARPWLPVVVYRAFAAARF 347
                 5556666666666555544 PP

>> TIGR02814  pfaD_fam: PfaD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0012      0.73      29      73 ..      92     136 ..      76     142 .. 0.90
   2 !    8.8   0.3   0.00022      0.13     229     282 ..     254     307 ..     249     314 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0012
   TIGR02814  29 giaskelvialgragllgffGagGlsleeveeaiekiqqalekge 73 
                  i++ elv a+++ag +g + +g ls  e +e+i++ ++ l +++
  MMETSP1061-20121228|3769_1  92 WISTPELVAAVSNAGGVGILATGPLSACETRESIRRTRELLANNN 136
                 599*********************************999888765 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00022
   TIGR02814 229 aaGGiGtPeavaaafalGadfivtgsvnqaaveagtsdkvkklLakidvqDtay 282
                 aaGG        aa alGad +  gs   +++e+  ++++k+ +  +d + t y
  MMETSP1061-20121228|3769_1 254 AAGGFANGRGLHAALALGADAVAMGSRMATTKESPLAEATKEAIVGADESHTIY 307
                 89****************************************999999888877 PP

>> TIGR01304  IMP_DH_rel_2: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.092        54      41      76 ..      79     114 ..      66     136 .. 0.85
   2 !   12.6   0.4   2.2e-05     0.013     256     293 ..     251     288 ..     249     300 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.092
   TIGR01304  41 yrfelPvlaspmdalvspelaielgelGglGvlnle 76 
                 +  + P++   m  +  pel+  +++ Gg+G+l + 
  MMETSP1061-20121228|3769_1  79 FGCDHPIVLPGMSWISTPELVAAVSNAGGVGILATG 114
                 566889999999999*****************9765 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.2e-05
   TIGR01304 256 hviadGgietsGdlakaiacGadavvlGsPlaraaeaa 293
                 +++a Gg  ++  l  a+a Gadav +Gs +a ++e++
  MMETSP1061-20121228|3769_1 251 PLVAAGGFANGRGLHAALALGADAVAMGSRMATTKESP 288
                 57999***************************999875 PP

>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2     1e-05    0.0061     256     293 ..     246     283 ..     224     302 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1e-05
   TIGR02151 256 aakkleliasGGlrsgldvakalaLGAdlvglarplLk 293
                 + ++++l+a+GG  +g  +  alaLGAd+v++   +  
  MMETSP1061-20121228|3769_1 246 EFPDTPLVAAGGFANGRGLHAALALGADAVAMGSRMAT 283
                 45789**************************9877655 PP

>> TIGR02708  L_lactate_ox: L-lactate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.5   3.5e-05      0.02     237     313 ..     203     279 ..     196     283 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.5e-05
   TIGR02708 237 qcaedaeral.kagasgiwvtnhgarqldeapaafdslqevaeavdkrvpivfdsgvrrgehvfkalasgadlvalgr 313
                   +e a+ra+ + ga  + vt h a    +  +++  ++ +a       p+v   g   g+ +  ala gad va+g 
  MMETSP1061-20121228|3769_1 203 TNREHASRAIgDGGADALMVTGHEAAAHGGDVTSLVLVPSLAREFP-DTPLVAAGGFANGRGLHAALALGADAVAMGS 279
                 5689999999567899***********99999*********98886.57***************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1534.76
//
Query:       MMETSP1061-20121228|3767_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-11   40.7   0.1    0.00034   18.6   0.0    3.3  4  TIGR03033 phage_rel_nuc: putative phage-type endonuclease


Domain annotation for each model (and alignments):
>> TIGR03033  phage_rel_nuc: putative phage-type endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.53   2.2e+03     109     136 ..      19      46 ..      10      57 .. 0.55
   2 !   18.1   0.0   1.2e-07   0.00048       9      45 ..     259     297 ..     250     316 .. 0.84
   3 ?   -2.7   0.0      0.31   1.3e+03      51      67 ..     344     360 ..     338     371 .. 0.73
   4 !   18.6   0.0   8.4e-08   0.00034      87     152 ..     412     483 ..     384     484 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.53
   TIGR03033 109 plekasklwkselkgevpeyyqaQvqvq 136
                   +++   wk+  +++++   q Q q q
  MMETSP1061-20121228|3767_1  19 NPRETRFVWKQSGTSKSKSRKQQQQQQQ 46 
                 4444455566555555555444444444 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 1.2e-07
   TIGR03033   9 WlelRkeg..itasdiaaimGlsPyktrleLwkektgka 45 
                 W +lRk+   ++as+ ++++G + + +r++L++ k+  +
  MMETSP1061-20121228|3767_1 259 WMALRKNVvdVSASQLSVVLGTNYFTSREKLLQDKVRAR 297
                 *******97789***********************9643 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.31
   TIGR03033  51 neavehgvkledeAref 67 
                  +a ++g k+e+ A + 
  MMETSP1061-20121228|3767_1 344 SKACAWGIKMEPLAFAQ 360
                 568899*****998654 PP

  == domain 4    score: 18.6 bits;  conditional E-value: 8.4e-08
   TIGR03033  87 pwlaAslDglvv.......tdkqivEiKcplekasklwkselk.gevpeyyqaQvqvqlavsgsqkadllvylg 152
                   + As+Dg+v         +  ++EiK    +  ++  s  +  + p  ++ Q+q q+a+++++ +dl+++++
  MMETSP1061-20121228|3767_1 412 YVFGASPDGMVTeqskggePSIGLLEIKSLWGR--RNKGSLPEfHNCPSRFYDQIQGQMAICDKEWCDLMLFIP 483
                 5688*******9777766555568999999888..444444444788888999****************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.10s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 2166.82
//
Query:       MMETSP1061-20121228|3776_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1989.99
//
Query:       MMETSP1061-20121228|3778_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 615.95
//
Query:       MMETSP1061-20121228|3774_1  [L=1693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-14   50.9   0.0    1.6e-06   24.5   0.0    2.4  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    3.3e-14   50.3   0.0    2.6e-06   24.2   0.0    2.2  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.3e-12   43.5   0.2    1.2e-06   25.1   0.0    2.3  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    4.2e-12   42.9   0.0    5.6e-08   29.2   0.0    2.3  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    6.4e-12   42.6   0.0    3.1e-06   23.8   0.0    2.3  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.4e-09   33.8   0.0    1.3e-05   21.6   0.0    2.2  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    2.7e-09   34.6   0.0    0.00023   18.5   0.0    2.3  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      2e-08   31.8   0.0     0.0032   14.7   0.0    2.4  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.3e-08   31.5   0.1     0.0019   15.4   0.0    2.2  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.4e-08   30.9   6.3    2.6e-07   27.5   0.0    2.7  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.1e-07   27.9   0.1    8.5e-05   19.9   0.0    2.3  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    3.4e-07   27.8   0.1    0.00089   16.6   0.0    2.7  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
      7e-07   25.9  11.3    1.8e-05   21.3   0.0    2.9  3  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    9.9e-07   25.9   0.1    0.00033   17.5   0.0    2.5  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
      1e-06   25.1   0.0    0.00018   17.7   0.0    2.5  2  TIGR00958 3a01208: antigen peptide transporter 2
    1.1e-06   25.4   1.7    9.1e-05   19.1   0.0    2.4  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    2.9e-06   24.5   0.0      0.018   12.0   0.0    2.3  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    4.5e-06   23.9   0.0      0.017   12.2   0.0    2.4  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    9.3e-06   23.1   0.0     0.0023   15.3   0.0    2.4  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.1e-05   22.7   0.1      0.055   10.5   0.0    2.5  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.1e-05   22.9   0.0      0.017   12.5   0.0    2.4  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.1e-05   22.8   0.0    0.00012   19.4   0.0    2.2  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.1e-05   20.5   0.0    0.00042   16.8   0.0    2.0  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    3.8e-05   20.7   0.0       0.06   10.2   0.0    2.5  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    4.7e-05   20.8   0.0    0.00014   19.2   0.0    1.7  2  TIGR01978 sufC: FeS assembly ATPase SufC
    9.4e-05   20.0   0.1      0.073   10.5   0.0    2.3  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    0.00011   19.6   0.0      0.063   10.6   0.0    2.3  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    0.00019   18.8   0.0     0.0008   16.8   0.0    1.9  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    0.00019   19.0   0.0     0.0011   16.5   0.0    2.0  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    0.00024   18.4   0.3     0.0009   16.6   0.1    1.9  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    0.00026   17.5   0.1     0.0019   14.7   0.0    2.3  2  TIGR00955 3a01204: pigment precursor permease
    0.00055   16.3   0.0       0.13    8.4   0.0    2.4  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    0.00081   17.0   0.1       0.62    7.6   0.1    2.5  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
     0.0013   16.1   0.0      0.021   12.2   0.0    2.3  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
     0.0013   16.3   0.0     0.0039   14.8   0.0    1.7  2  TIGR00960 3a0501s02: type II secretory pathway family protein
     0.0024   15.4   0.0     0.0055   14.2   0.0    1.5  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
     0.0033   14.8   0.0      0.022   12.1   0.0    2.1  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
     0.0042   13.9   0.0       0.22    8.2   0.0    2.2  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
     0.0058   14.1   0.0      0.013   12.9   0.0    1.5  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
  ------ inclusion threshold ------
      0.013   12.9   0.0      0.035   11.4   0.0    1.6  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      0.016   12.2   0.0        1.8    5.5   0.0    2.3  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
      0.017   11.5   0.0       0.27    7.5   0.0    2.0  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
      0.018   11.9   0.0        2.5    4.8   0.0    2.2  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      0.029   11.4   0.0        1.9    5.5   0.0    2.2  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
       0.03    9.7   0.0      0.044    9.1   0.0    1.1  1  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.8e-08   1.6e-06     451     552 ..    1374    1485 ..    1339    1502 .. 0.75
   2 !   23.9   0.0   2.7e-08   2.5e-06     623     691 ..    1610    1676 ..    1607    1681 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.8e-08
   TIGR03375  451 eeekrllsreklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllg.ly.........epteGsvlldgvdirqidpadlrrnigyvpqdvtL 552 
                  + + +++   + +  i+++++  ++  ++  a++  +l+ k+Ge vai+G+ G GK+ ll  l++ l          +  +G +++ g+di++++++ l+r++g+   dv+ 
  MMETSP1061-20121228|3774_1 1374 NADFQFMGSVSPSAGIAVRDLWAAHATKRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAEnLTfppkrttttNKVRGLISVGGLDISKWNRKMLKRRLGIFLSDVRV 1485
                  333445555566778999999999999******************************988766541322111111114568**********************998877765 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 2.7e-08
   TIGR03375  623 pillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdevlea 691 
                  +illLDEPt++  +  e +l++ L+  l++   v++t + ++ + +d+i v+++G iv  G+++e+l++
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTMHSEVDEGQLFRDLR--LTGAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLAR 1676
                  69**********************8..56778899****************************999875 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   4.3e-08   3.9e-06     286     430 ..    1333    1490 ..    1268    1500 .. 0.73
   2 !   24.2   0.0   2.9e-08   2.6e-06     496     566 ..    1610    1678 ..    1607    1687 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 4.3e-08
   TIGR02204  286 lvagslgalsevlgelqraaGaaerliellkaksdikaPaqpkal....pakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllr..fydPq........sGailldGvdlreldpeelrerlalvpqdsalfaasv 430 
                  l a    +l  v+   + a+   +  ++l+++k++i++ +++ ++    +++ ++ i++ ++  a+ ++   +a++g +l+ ++Ge va+ G  G Gk+ ll+ l     + P+        +G i+++G+d+ + +++ l++rl +   d+ + a s+
  MMETSP1061-20121228|3774_1 1333 LFALVYQTLEKVMQSANDASIVKNFHADLVSTKQEIDESNKNADFqfmgSVSPSAGIAVRDLWAAHATKR-AWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAEnlTFPPKrttttnkvRGLISVGGLDISKWNRKMLKRRLGIFLSDVRVVADSA 1490
                  3455667889999999999999999999999999999988877652222456678899999988888776.8*****************************999865223555422222333699**********************999999998886 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 2.9e-08
   TIGR02204  496 piLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakgg 566 
                   iLLLde t+      e ++ + l    +g +t++   + a  + ad+i v+ +G ive Gth+eL+a+g 
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTMHSEVDEGQLFRDL--RLTGAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLARGP 1678
                  59******9987666666665555..478999***********************************9874 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   7.1e-06   0.00065     291     380 ..    1334    1437 ..    1266    1492 .. 0.56
   2 !   25.1   0.0   1.4e-08   1.2e-06     491     563 ..    1611    1684 ..    1608    1693 .] 0.77

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 7.1e-06
   TIGR02203  291 Ltnvsaklqkglaaae..sv.....fallDsppekdeGtraler.vrGk......vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllp 380 
                   + v ++l k + +a+  s+       l+ +++e de +++ +    G+      + +r++ + +  + + a+++ +l+ ++Ge+va+ G  G Gk+ l+  l+
  MMETSP1061-20121228|3774_1 1334 FALVYQTLEKVMQSANdaSIvknfhADLVSTKQEIDESNKNADFqFMGSvspsagIAVRDLWAAHATKRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLA 1437
                  344555555555555422121111145778888888887776633555511112267999999*********************************98876654 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 1.4e-08
   TIGR02203  491 iLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlar...nGlYa 563 
                  iL+LDe t+   +  e ++   L   + g  t++   + +  + aD+i v+ +G ive Gth+eLlar   + lYa
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTTMHSEVDEGQLFRDLR--LTGAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLARgpqQSLYA 1684
                  899999998777777777776664..567888889999999999**********************9622245554 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0002     0.019     346     520 ..    1248    1431 ..    1228    1445 .. 0.73
   2 !   29.2   0.0   6.2e-10   5.6e-08     635     702 ..    1610    1677 ..    1604    1685 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0002
   TIGR03796  346 kAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldD...vlenpvdeeleeeeekaaeseek......ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkst 520 
                     g+ ++ ++rw   +a + +++    + + +l++++ ++++   a++ vv + ++   + ti   ++  +  + f     +l  ++   q+le  ++  +D   v + ++d   +++e ++++++           s  + +r++  ++++  a  +++ +l+ k+G+ vA+ G  G Gk  
  MMETSP1061-20121228|3774_1 1248 SENGSVENALARWRASHAITPEESSYGPALSSVLRLVAYTFMAAVLAALPVVVSHLLAGETSTISSTLSIFQWDSLFDISFAQLFLFALVYQTLEKVMQSANDasiVKNFHADLVSTKQEIDESNKNADfqfmgsVSPSAGIAVRDLWAAHATKRAWAVRGANLHCKSGEIVAILGEDGNGKTR 1431
                  556777778888888888888877777788888888887666655555554444444444456666666666677788888888888888888888888888855466777787777766666666666334433333445789**************************************74 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 6.2e-10
   TIGR03796  635 siLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRdcdeiivlerGkvverGtHeellake 702 
                  siL+lDE t+      E ++ ++lr  g +++i + + +  R +d+i v+++G +ve GtH+ella++
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTMHSEVDEGQLFRDLRLTGAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLARG 1677
                  8*********999999************************************************9864 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   3.4e-08   3.1e-06     311     404 ..    1383    1486 ..    1365    1499 .. 0.82
   2 !   16.3   0.0   6.6e-06    0.0006     475     542 ..    1611    1675 ..    1608    1676 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 3.4e-08
   TIGR01842  311 PepegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarll..........vGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLf 404 
                   +p   ++v ++ ++++++++  ++g ++  k+Ge++ai+G  g Gk+ L  +l          +   ++++G + + g d+++w+r+ l +++G +  dv ++
  MMETSP1061-20121228|3774_1 1383 VSPSAGIAVRDLWAAHATKRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLaenltfppkrTTTTNKVRGLISVGGLDISKWNRKMLKRRLGIFLSDVRVV 1486
                  5688889999*************************************9777766222233332234566789999********************988888765 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 6.6e-06
   TIGR01842  475 lvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542 
                  +++LDeP +   e  e  l     +l+  ++++v+ t++ ++ + +d+i v+k+G++ ++G+++e+l+
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTTMHSEVDEGQLF---RDLRLTGAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLA 1675
                  799****9988888887775...68899************************************9986 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0005     0.046     472     540 ..    1405    1483 ..    1367    1500 .. 0.81
   2 !   21.6   0.0   1.4e-07   1.3e-05     613     690 ..    1610    1688 ..    1603    1691 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0005
   TIGR01846  472 vlsnlsldikaGeviGivGpsGsGkst.ltkllqrlyvPe.........kGrvlvdgvdlaladPawlrrqvgvvlqen 540 
                   ++  +l+ k+Ge++ i G+ G Gk+  lt l   l  P          +G + v g d++  + ++l+r++g+ l + 
  MMETSP1061-20121228|3774_1 1405 AVRGANLHCKSGEIVAILGEDGNGKTRlLTTLAENLTFPPkrttttnkvRGLISVGGLDISKWNRKMLKRRLGIFLSDV 1483
                  567789*******************863688988888774222222233588999*******************99875 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 1.4e-07
   TIGR01846  613 rilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellak...eglyaklyq 690 
                   il+lde t+      e  + r+lr  + + tvi  + + +  r ad+i v+++G ive G+h+ella+   ++lya  ++
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTMHSEVDEGQLFRDLRL-TGAATVI-TTNKWAIGRFADQICVMKNGSIVEMGTHNELLARgpqQSLYAAKWH 1688
                  59*******99999999999999984.5555655.56788999************************97555789998776 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   7.1e-05    0.0065       2      57 ..    1406    1467 ..    1405    1487 .. 0.70
   2 !   18.5   0.0   2.5e-06   0.00023     145     218 ..    1610    1679 ..    1605    1689 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.1e-05
   TIGR02770    2 vqdvnlslkrgkvlalvGesGsGks..ltalailglldkelt....ktsGeilldgkelaal 57  
                  v++ nl+ k g+++a++Ge G Gk+  lt+la   + +++ t    k++G i + g ++++ 
  MMETSP1061-20121228|3774_1 1406 VRGANLHCKSGEIVAILGEDGNGKTrlLTTLAENLTFPPKRTtttnKVRGLISVGGLDISKW 1467
                  7889********************95566776655556554411115567777777777665 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 2.5e-06
   TIGR02770  145 plliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq.ePk 218 
                  ++l+ DePtt    v + ++   +++lr + g +  +it +   + ++ad+++vm++G ive gt +el+   P+
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTMHSEVDEGQL---FRDLRLT-GAAT-VITTNKWAIGRFADQICVMKNGSIVEMGTHNELLArGPQ 1679
                  68999999997666666655...5555543.4444.467777889**********************99973455 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   4.4e-05     0.004      14      87 ..    1401    1479 ..    1389    1494 .. 0.76
   2 !   14.7   0.0   3.5e-05    0.0032     164     236 ..    1610    1679 ..    1606    1684 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.4e-05
   TIGR00972   14 ke..alkdvnleikknkvtaliGpsGcGkstllrslnrl.....ndlveevrieGkvllegkdiydkkldvvelrkkvGmv 87  
                  k+  a++  nl+ k+ +++a++G  G Gk+ ll +l        + ++ + +++G + + g di +   + + l++++G+ 
  MMETSP1061-20121228|3774_1 1401 KRawAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENltfppKRTTTTNKVRGLISVGGLDISKW--NRKMLKRRLGIF 1479
                  44338999***************************97531233345677788999999999999765..677777888765 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3.5e-05
   TIGR00972  164 evlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekpke 236 
                   +lLlDePt     +      +l ++L+ +    ++t n     r +d++ ++ +G++ve+g+ ++++ +  +
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTMHSEVDE---GQLFRDLRLTGAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLARGPQ 1679
                  59*******86544443...46899999999899999999999**********************99987544 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   2.1e-05    0.0019       7      72 ..    1404    1480 ..    1400    1496 .. 0.67
   2 !   13.7   0.0   6.7e-05    0.0061     144     214 ..    1610    1676 ..    1602    1691 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.1e-05
   TIGR01188    7 kAvdgvnlkveegevfglLGPnGAGKtttikmLtt.ll.kPd........sGtarvaGyDvvrepd.evRrsigvvp 72  
                   Av+g nl+ + ge++++LG  G GKt ++  L+  l+ +P+         G   v G D+ +  +  ++r++g+  
  MMETSP1061-20121228|3774_1 1404 WAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAEnLTfPPKrttttnkvRGLISVGGLDISKWNRkMLKRRLGIFL 1480
                  59*************************88888763122123211111111455556777777755524566677655 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 6.7e-05
   TIGR01188  144 evlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKer 214 
                  ++l LDEPt+    ++     +l ++l+ +g ++++tt++   + ++ad++ ++++G i+ ++t +eL +r
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTM---HSEVDEGQLFRDLRLTGAATVITTNKW-AIGRFADQICVMKNGSIVEMGTHNELLAR 1676
                  599******94...5555666888999****9999999987.589**********************9776 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.0       8.6   7.8e+02     216     246 ..     525     555 ..     494     620 .. 0.53
   2 !   27.5   0.0   2.8e-09   2.6e-07     248     394 ..    1284    1450 ..    1170    1491 .. 0.57
   3 !    6.3   0.0    0.0073      0.66     465     515 ..    1565    1634 ..    1557    1646 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 8.6
   TIGR02868 216 laqveeaereltraekraaaaealgaaltll 246
                  ++ +   ++++ ++++ aaa+a+++a+ + 
  MMETSP1061-20121228|3774_1 525 STASKLSPSRIRSLAQSGAAAAAVTTAAATR 555
                 3333333333333333333333333333222 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 2.8e-09
   TIGR02868  248 aGlavllallvgveavadgrlapvalAv....lvLlpLaafealaa....lpaAaqqltrvraaaeRieevldak.......vevaeasapaaeaaas.....ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallagll..dplkGevtl 394 
                  ++ + ++a+l++ + v ++ la+ + ++     ++   ++f++ +a    ++ + q+l++v ++a+  + v + +       +e +e++++a+ +         ++ + +rdl +++ ++ + +++g +l+ + Ge va++G  G GK+ Ll +la  l  +p++ + t+
  MMETSP1061-20121228|3774_1 1284 VAYTFMAAVLAALPVVVSHLLAGETSTIsstlSIFQWDSLFDISFAqlflFALVYQTLEKVMQSANDASIVKNFHadlvstkQEIDESNKNADFQ--FmgsvsPSAGIAVRDLWAAHATKRAwAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENLtfPPKRTT-TT 1450
                  44444444555554444444444444430000333333444443322222455555666666655544433332233443223333333333322..1445557899************************************************975421444333.22 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0073
   TIGR02868  465 lgeggarlSGGerqRlalARaLl...................adapvllLDEPtehLDaeteeelledLl 515 
                  l+ +   lS Ge  +l+lAR+L                        +llLDEPt      +e +l +dL+
  MMETSP1061-20121228|3774_1 1565 LKPRSVVLSPGEWSKLILARVLSqtiydndnalasndkiensLIGSILLLDEPTTMHSEVDEGQLFRDLR 1634
                  6778889***************999*********999987765668*******99888888889999987 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   9.3e-07   8.5e-05       2      79 ..    1389    1479 ..    1388    1489 .. 0.83
   2 ?    5.7   0.0     0.021       1.9     152     230 ..    1610    1684 ..    1605    1691 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 9.3e-07
   TIGR03864    2 leveglsfaygkrr..alddvsltvakgefvaLLGpnGaGkstLfslltrLyeak..........egeikvaGldlrrapkeala.rlGvv 79  
                  ++v++l  a++++r  a+++ +l+ ++ge+va+LG +G Gk+ L++ l+  ++ +          +g i+v Gld+++ ++++l+ rlG+ 
  MMETSP1061-20121228|3774_1 1389 IAVRDLWAAHATKRawAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENLTFPpkrttttnkvRGLISVGGLDISKWNRKMLKrRLGIF 1479
                  567777777777762358999*********************999988876666568899999999************9999996268875 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.021
   TIGR03864  152 klLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaeadaedleq 230 
                  ++LLlDe+t     +s  +  +  r+l   +g + + +t      + +d++ v+++G ++  G+ +el a+ + ++l +
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTM---HSEVDEGQLFRDLR-LTGAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLARGPQQSLYA 1684
                  58999999974...44444445555554.3445555566666667889********************99988888765 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0         8   7.3e+02     182     232 ..     536     591 ..     525     596 .. 0.64
   2 !   16.6   0.0   9.8e-06   0.00089      24      83 ..    1413    1475 ..    1389    1491 .. 0.77
   3 !    8.0   0.0    0.0043       0.4     180     233 ..    1629    1682 ..    1605    1686 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 8
   TIGR02323 182 rglvrelglaviivthlavar.llaqrllvmkqG....rvvesGltrvl.pkhpytq 232
                 r+l +  g a+  vt  a +r   a+r l +++      vv    t ++ p +py q
  MMETSP1061-20121228|3774_1 536 RSLAQ-SGAAAAAVTTAAATRaKAAHRNLPVRRKavspSVVSDTTTSIIpPLQPYGQ 591
                 56655.444555555555555156788887776512224677778888878899998 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 9.8e-06
   TIGR02323   24 lypGevlgivGesGsGkstllkalaarll..adaGevtyesrsr.elellalseaerrlllrt 83  
                     Ge+++i+Ge G Gk+ ll++la++l+  +++ + t + r+  ++  l +s+ +r++l r 
  MMETSP1061-20121228|3774_1 1413 CKSGEIVAILGEDGNGKTRLLTTLAENLTfpPKRTTTTNKVRGLiSVGGLDISKWNRKMLKRR 1475
                  568***********************9864377788888888876667778888888887775 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0043
   TIGR02323  180 llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGlt.rvlpkhpytql 233 
                  l r l    g a++i t   a+ r +a+++ vmk+G +ve G   ++l + p   l
  MMETSP1061-20121228|3774_1 1629 LFRDLRL-TGAATVITTNkWAIGR-FADQICVMKNGSIVEMGTHnELLARGPQQSL 1682
                  3455543.5667788887577777.688**************98677788776555 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.8       4.7   4.2e+02     217     289 ..    1045    1118 ..    1034    1134 .. 0.66
   2 !   21.3   0.0     2e-07   1.8e-05     361     542 ..    1289    1489 ..    1250    1506 .. 0.66
   3 !   12.2   0.0   0.00011    0.0099     609     674 ..    1611    1676 ..    1608    1684 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 4.7
   TIGR03797  217 drLLrlpasfFre.ysagdLasramgvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvai 289 
                  drL    as  re  + ++L+ r  + + ++r ls+++ ++  s + ++++ + l ++ + + +  + +++ a+
  MMETSP1061-20121228|3774_1 1045 DRLATSVASAVREeSEYAQLYLRLVAATPMNRNLSDRLATTSKSQVAGVVSKARLNTFVWIVLASLTFMTVSAV 1118
                  55555444444441456889999999999999999999999999999999988887777654333333333222 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 2e-07
   TIGR03797  361 ltvlnavlpvltsavlfalaisllaaaklslgsfla.fntafgs..flkavtslaetlie.vlavvplyerakPileaepEvdeekvdpg.kLsGa......ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlL...LgF.......ekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgs 542 
                  ++++ a+lpv++s +l   ++++  +++ls+ ++ + f ++f++  + + v +  e +++ ++++  + +    ++++++E+de++++++ + +G+      i+v+ +  + ++  +  ++  +l+ + Ge vai G+ G GK  ll  L   L F        +   G ++  G d++k + + ++r+lG+ L + r++++s
  MMETSP1061-20121228|3774_1 1289 MAAVLAALPVVVSHLLAGETSTI--SSTLSIFQWDSlFDISFAQlfLFALVYQTLEKVMQsANDASIVKNFHADLVSTKQEIDESNKNADfQFMGSvspsagIAVRDLWAAHATKRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLaenLTFppkrtttTNKVRGLISVGGLDISKWNRKMLKRRLGIFLSDVRVVADS 1489
                  45555666666666666555553..333333333211223332210222333333333330333333333345577777777776655543555542222227899999999999999*****************************99977778833322212345799**************************9998654 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 0.00011
   TIGR03797  609 illfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlak 674 
                  ill+DE T              l    ++ ++   +    r ad+i v+++G +ve+G+++eLla+
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTTMHSEVDEGQLFRDLRLTGAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLAR 1676
                  677777776666666666667776666666666677777788*********************987 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   3.7e-06   0.00033     320     397 ..    1380    1475 ..    1325    1490 .. 0.69
   2 ?    5.6   0.0     0.015       1.4     455     529 .]    1568    1659 ..    1553    1659 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.7e-06
   TIGR02857  320 s.......slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfve..pt........eGailvngaelaeldadswrkq 397 
                  +        + ++++  a   ++  a+++ +l+ ++ge+va++G+ G GK+ ll  l+  ++  p+        +G i+v+g ++++++++ ++++
  MMETSP1061-20121228|3774_1 1380 MgsvspsaGIAVRDLWAAHATKRaWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENLTfpPKrttttnkvRGLISVGGLDISKWNRKMLKRR 1475
                  1344555588999998888555558******************************99864321121111111225777788888888888877766 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.015
   TIGR02857  455 rgagLSgGqrqRlaLArallrda...................pllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529 
                  r+  LS G+  +l LAr+l ++                    ++lllDEPt    +  e ++ + lr   +g+++++ + + a+ + ad+i v+
  MMETSP1061-20121228|3774_1 1568 RSVVLSPGEWSKLILARVLSQTIydndnalasndkiensligSILLLDEPTTMHSEVDEGQLFRDLRL--TGAATVITTNKWAIGRFADQICVM 1659
                  6677999999999999998776556667788888888989999*********9999999999988886..888899999999999999988765 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.019       1.7     498     557 ..    1407    1476 ..    1401    1514 .. 0.73
   2 !   17.7   0.0     2e-06   0.00018     638     703 ..    1611    1676 ..    1607    1685 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.019
   TIGR00958  498 kdLtftlepGevvalVGPsGsGKStvaall.enlYqP.....tg....GqvllDgkplkeydhkylhrkv 557 
                  ++ ++  ++Ge+va+ G +G+GK    + l enl  P     t+    G + + g ++++++ k l+r++
  MMETSP1061-20121228|3774_1 1407 RGANLHCKSGEIVAILGEDGNGKTRLLTTLaENLTFPpkrttTTnkvrGLISVGGLDISKWNRKMLKRRL 1476
                  5668899****************99876552677555233321133336677777888888888877764 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 2e-06
   TIGR00958  638 vLiLDeAtSALDa.eveqllqesksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmek 703 
                  +L+LDe t      +  ql+ + + +   tv + +++  + + ad+i v+k+gs+ve+Gth++L ++
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTTMHSEvDEGQLFRDLRLTGAATV-ITTNKWAIGRFADQICVMKNGSIVEMGTHNELLAR 1676
                  89****9976543255567777777666666.56999***************************876 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1       6.8   6.2e+02      28     120 ..    1104    1197 ..    1094    1201 .. 0.74
   2 !   19.1   0.0     1e-06   9.1e-05     279     419 ..    1326    1484 ..    1276    1494 .. 0.69
   3 ?    5.1   0.0     0.017       1.5     520     560 ..    1637    1677 ..    1606    1686 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 6.8
   TIGR01192   28 nivlaaitiaepilfgriidaisskkdvlvilllwagfgvfniiayvlvareadrlahgrratllteafgriismpl..swhsqrgtsnalhtll 120 
                   ivla +t       g i+ a+ss    +++l  w  + v     + + +   + l h    +  t+af+  +  pl  s+h     s  l tll
  MMETSP1061-20121228|3774_1 1104 WIVLASLTFMTVSAVGPILMALSSTFTKIAMLPEWRQWPVQWRNLFSASSILIQNLFHYLE-SQSTQAFSTFVENPLrfSFHLSMFGSLVLCTLL 1197
                  5788888888888888888999999999999999999988888888888888888888765.456788888888887334565555666666665 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 1e-06
   TIGR01192  279 igfanlli.....grldqlkafvtqivearakledffdledsvkereepadarelknvk..gavefrdisfefan.ssqgvrdvsfeakagqtvaivgptgagkttlinllqr..vydpk........sgqilidgvdiatvtreslrksiatvfqdag 419 
                  i fa+l++       l+++ + ++ +   +    d+ + ++ + e ++ ad + + +v+    +  rd+    a   +  vr   +++k+g+ vai+g  g gkt l+  l     + pk         g i++ g+di+  +r+ l++ +   + d  
  MMETSP1061-20121228|3774_1 1326 ISFAQLFLfalvyQTLEKVMQSANDASIVKNFHADLVSTKQEIDESNKNADFQFMGSVSpsAGIAVRDLWAAHATkRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAEnlTFPPKrttttnkvRGLISVGGLDISKWNRKMLKRRLGIFLSDVR 1484
                  56666544110013344444444444444455556666677777888888888888886224588999877666515679*************************99877743113344322222222699******************9988887765 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.017
   TIGR01192  520 nrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkd 560 
                    +t i + + +  r ad +  + +g ++e+g+ +el  ++
  MMETSP1061-20121228|3774_1 1637 GAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLARG 1677
                  45688888999999***********************9875 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00071     0.065       5      39 ..    1402    1436 ..    1398    1490 .. 0.81
   2 !   12.0   0.0    0.0002     0.018     195     219 ..    1651    1675 ..    1610    1684 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00071
   TIGR01186    5 lklgvndvdleieeGeiiviiGlsGsGkstlvrll 39  
                     +v+ ++l+ + Gei+ i+G  G Gk+ l+  l
  MMETSP1061-20121228|3774_1 1402 RAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTL 1436
                  5679*************************887655 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.0002
   TIGR01186  195 rlgdrivilkaGeivqvGtPdeilr 219 
                  r +d+i ++k+G iv +Gt +e+l 
  MMETSP1061-20121228|3774_1 1651 RFADQICVMKNGSIVEMGTHNELLA 1675
                  89********************996 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00018     0.017      17      51 ..    1403    1437 ..    1390    1485 .. 0.80
   2 !    9.0   0.0    0.0017      0.15     154     225 ..    1610    1676 ..    1606    1686 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00018
   TIGR03265   17 ftalkdislsvkkgelvclLGPsGCGkttLLriia 51  
                    a++  +l+ k ge+v++LG  G Gkt LL  +a
  MMETSP1061-20121228|3774_1 1403 AWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLA 1437
                  5678999************************9988 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0017
   TIGR03265  154 glLLLDePlsaLDakvre.kLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeq 225 
                  ++LLLDeP   + + v e +L ++l+      g +t+ +t ++     +aD+i vm++g+i  +gt +e+  +
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTT-MHSEVDEgQLFRDLRL----TGAATV-ITTNKWAIGRFADQICVMKNGSIVEMGTHNELLAR 1676
                  6788888865.4444433145444432....233444.44455555689******************998654 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.5e-05    0.0023      13      50 ..    1403    1440 ..    1391    1502 .. 0.84
   2 ?    5.2   0.0      0.03       2.8     152     219 ..    1611    1673 ..    1604    1682 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.5e-05
   TIGR03410   13 sevlrdvslevekgevvavlGrngvGkttllkalvgll 50  
                  + ++r+ +l+ ++ge+va+lG +g Gkt ll +l   l
  MMETSP1061-20121228|3774_1 1403 AWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENL 1440
                  5678999*************************997644 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.03
   TIGR03410  152 lllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeel 219 
                  +llLDePt     s ++  ++  ++l+ ++  +++  ++      ++ad+++v+++G++v+ g+++el
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTT--MHSEVD-EGQLFRDLRLTGAATVITTNKW-A-IGRFADQICVMKNGSIVEMGTHNEL 1673
                  799999995..334444.4788999999877777766554.3.4578***************999886 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0013      0.12      12      77 ..    1401    1476 ..    1393    1488 .. 0.70
   2 !   10.5   0.0    0.0006     0.055     157     237 ..    1610    1686 ..    1606    1692 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0013
   TIGR03873   12 ggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGlla..pd........aGevdlagadlkalsrrararrv 77  
                   + + v + ++   +G++ ++lG +G Gk+ ll  la  l+  p+        +G ++++g d+  ++r+   rr+
  MMETSP1061-20121228|3774_1 1401 KRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENLTfpPKrttttnkvRGLISVGGLDISKWNRKMLKRRL 1476
                  56688999999**********************9998654321331111111145557777777777777666665 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.0006
   TIGR03873  157 klllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltpeliaavyGvd 237 
                  ++llldePt    +++ ++  +l r+l  +g+++v++    +   +++d++ v+++G +v  G+ +e+l++   +++y  +
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTT---MHSEVDEGQLFRDLRLTGAATVITTNKWAI-GRFADQICVMKNGSIVEMGTHNELLARGPQQSLYAAK 1686
                  69******96...455666778899998899999998877655.58***********************998888888765 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   0.00018     0.017      15      48 ..    1405    1438 ..    1396    1483 .. 0.78
   2 !    7.7   0.0    0.0055       0.5     151     220 ..    1611    1675 ..    1602    1684 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00018
   TIGR00968   15 alddvdlevktGslvallGpsGsGkstllrviaG 48  
                  a+   +l+ k+G++va+lG  G Gk+ ll ++a 
  MMETSP1061-20121228|3774_1 1405 AVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAE 1438
                  677889************************9984 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0055
   TIGR00968  151 vllldepfgaldakvrkelrawlrklhdevkvt..tvfvthdqeealevadrivvlekGkieqvgsaeevyd 220 
                  +llldep + + ++v +       +l  ++++t  + ++t ++      ad+i v+++G i ++g+ +e+  
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTT-MHSEVDEG------QLFRDLRLTgaATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLA 1675
                  778888854.55555542......3333333331134556666677789*****************999864 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.4e-06   0.00012      15      91 ..    1403    1486 ..    1389    1545 .. 0.60
   2 ?    0.6   0.0      0.72        66     166     233 ..    1611    1673 ..    1607    1683 .. 0.70

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.4e-06
   TIGR02315   15 kqalknvnleikkGelvaviGlsGaGkstllrsinrlve..........issgsillegkevtklkkkelrklrkkigmifqeynli 91  
                    a++  nl+ k+Ge+va++G+ G Gk+ ll ++ +  +          + +g i + g +++k +    ++l++++g+   +  ++
  MMETSP1061-20121228|3774_1 1403 AWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENLTfppkrttttnKVRGLISVGGLDISKWN---RKMLKRRLGIFLSDVRVV 1486
                  458999**************************9976444332221111122223333333333332...233455555555555555 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.72
   TIGR02315  166 lilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233 
                  ++l DEP++   +    q++++l+     +g +++++  +  +  ++ad+i  +k+g+iv  g+ +el
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTTMHSEVDEGQLFRDLRL----TGAATVITTNKWAI-GRFADQICVMKNGSIVEMGTHNEL 1673
                  6667777766666666666665553....34455555555554.58**************99988876 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.24        22     493     550 ..    1409    1476 ..    1384    1520 .. 0.75
   2 !   16.8   0.0   4.6e-06   0.00042     631     698 ..    1610    1676 ..    1603    1685 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.24
   TIGR01193  493 islkikknekitlvGlsGsGkstlakllvkff..........qaesGeillngkslkdidkhelrqli 550 
                   +l+ k+ e ++++G  G Gk+ l   l +            ++  G i+++g ++++ ++++l++ +
  MMETSP1061-20121228|3774_1 1409 ANLHCKSGEIVAILGEDGNGKTRLLTTLAENLtfppkrttttNKVRGLISVGGLDISKWNRKMLKRRL 1476
                  6899999**************98887776532234554444455678999999999999999998754 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 4.6e-06
   TIGR01193  631 kvlildestsnldlltekkivenllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellke 698 
                   +l+lde t+    + e ++  +l      t+   + +  + + +d+i v+++G i+e G+h+ell++
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTMHSEVDEGQLFRDLRLTGAATV-ITTNKWAIGRFADQICVMKNGSIVEMGTHNELLAR 1676
                  699******************99865555555.578899**************************986 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00066      0.06      24      56 ..    1406    1438 ..    1383    1484 .. 0.73
   2 !    7.7   0.0    0.0036      0.33     194     233 ..    1640    1679 ..    1605    1690 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00066
   TIGR03258   24 lddlsleieaGellallGksGsGkttllravaG 56  
                  +    l+ ++Ge++a+lG+ G Gkt ll  +a 
  MMETSP1061-20121228|3774_1 1406 VRGANLHCKSGEIVAILGEDGNGKTRLLTTLAE 1438
                  456679999*******************99885 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0036
   TIGR03258  194 lyvthdrdealvladkillmkeGslialGetralydapad 233 
                   ++t ++     +ad+i +mk+Gs++++G+ ++l    ++
  MMETSP1061-20121228|3774_1 1640 TVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLARGPQ 1679
                  3455666666679*****************9999876554 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.6e-06   0.00014      15      82 ..    1405    1481 ..    1389    1515 .. 0.75
   2 ?   -2.0   0.0       4.6   4.2e+02     212     229 ..    1653    1670 ..    1631    1677 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.6e-06
   TIGR01978   15 iLkglnlevkkGevhaimGpnGsGkstLskvlagh........ekyevtsGeiklkgqdllelevee.raraGlfla 82  
                   ++g nl+ k+Ge++ai+G +G+Gk  L ++la +        ++++ ++G i++ g d+++ + +  + r G+fl+
  MMETSP1061-20121228|3774_1 1405 AVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENltfppkrtTTTNKVRGLISVGGLDISKWNRKMlKRRLGIFLS 1481
                  47899********************9999999876333221112334457888889999988877652567788887 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 4.6
   TIGR01978  212 PdvvhvlldGrivksGdv 229 
                   d++ v+ +G iv+ G  
  MMETSP1061-20121228|3774_1 1653 ADQICVMKNGSIVEMGTH 1670
                  4899**********9975 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0099       0.9      17      48 ..    1405    1436 ..    1398    1474 .. 0.89
   2 !   10.5   0.0    0.0008     0.073     163     229 ..    1610    1673 ..    1607    1683 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0099
   TIGR03411   17 alndlslsveegelrviiGpnGaGkttllDvi 48  
                  a++  +l+ ++ge+ +i+G +G Gkt ll  +
  MMETSP1061-20121228|3774_1 1405 AVRGANLHCKSGEIVAILGEDGNGKTRLLTTL 1436
                  88999*********************999765 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.0008
   TIGR03411  163 kllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229 
                  ++lllDeP++    + +   ++l+++l+ + +  v+  +   + ++a+++ v+++G+++  G+ +e+
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTT---MHSEVDEGQLFRDLRLTGAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNEL 1673
                  68******85...44455679***************************************9998765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0    0.0007     0.063      21     152 ..    1400    1550 ..    1391    1575 .. 0.58
   2 ?    6.6   0.0     0.011         1     195     238 ..    1632    1673 ..    1610    1682 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0007
   TIGR02769   21 kqrkavldnvslsleeGetvallGrsGaGkstlar.lllGlekP.........akGevsfrGqdlakldrkqrka....frrdvqlvfqdsisavnprksvreiigePlr.....hltsldeserkariael...lelvelrsevldklPrqls 152 
                   +r+  + + +l+ ++Ge va+lG+ G Gk+ l   l   l  P          +G +s  G d++k +rk  k+    f  dv++v  ds s + +  +++ei+ eP+      +  sl+++      +++   l+l +l  + l +lP++ s
  MMETSP1061-20121228|3774_1 1400 TKRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTtLAENLTFPpkrttttnkVRGLISVGGLDISKWNRKMLKRrlgiFLSDVRVV-ADSASLF-SGWTMEEIL-EPIDgvrssNNDSLQRTYTSGEKSAMllaLKLTGLYGSLLTRLPSKTS 1550
                  45566678899*******************754330333344331111111114577888888998888876654334456666665.4555544.345555554.666511111233444443333333331113555666666777776655 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.011
   TIGR02769  195 klkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvael 238 
                  +l+  +G a  +it +  ++ +fa+++ v+++G ive  +  el
  MMETSP1061-20121228|3774_1 1632 DLRL-TGAAT-VITTNKWAIGRFADQICVMKNGSIVEMGTHNEL 1673
                  5543.35454.5677778999****************8776665 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   8.7e-06    0.0008      13      46 ..    1405    1438 ..    1394    1456 .. 0.87
   2 ?   -1.6   0.0       3.7   3.4e+02     155     203 ..    1611    1656 ..    1609    1659 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 8.7e-06
   TIGR03608   13 ilkklslkiekGelvaivGesGsGKstlLnilgl 46  
                   ++  +l+ ++Ge+vai+Ge G GK+ lL  l+ 
  MMETSP1061-20121228|3774_1 1405 AVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAE 1438
                  567889***********************99986 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 3.7
   TIGR03608  155 lilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrv 203 
                  ++l DEPt+   + ++    +l+++l+ +g   +i t   ++ + ad++
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTTMHSEVDEG---QLFRDLRLTGAATVITTNKWAIGRFADQI 1656
                  8999***9865555544...56788888888889999888888888877 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-05    0.0011      13      94 ..    1401    1489 ..    1389    1493 .. 0.79
   2 ?   -0.7   0.0       2.2     2e+02     157     212 ..    1610    1661 ..    1607    1663 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.2e-05
   TIGR02673   13 agveaLkdvslkiekgeflfltGasGaGkttllklllgaek..........psrGevevagedvarlrerelpllRrkigvvfqDfkllkdr 94  
                  + ++a++  +l+ + ge++ + G+ G Gkt ll  l + ++            rG ++v g d+++ +++   +l+r++g+   D +++ d 
  MMETSP1061-20121228|3774_1 1401 KRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENLTfppkrttttnKVRGLISVGGLDISKWNRK---MLKRRLGIFLSDVRVVADS 1489
                  567899999************************9998654322111111114689*********999887...689***********99875 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 2.2
   TIGR02673  157 elllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelek 212 
                  ++ll DePt  + +e+ e   +l+++l  +G++ +++t + + + r++ +++ +++
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTT-MHSEVDEG--QLFRDLRLTGAATVITTNKWA-IGRFADQICVMKN 1661
                  58999***96.44444443..789999999999999886554.4555566666655 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   9.9e-06    0.0009       6      43 ..    1404    1441 ..    1400    1480 .. 0.81
   2 ?   -1.6   0.0       3.7   3.3e+02     147     179 ..    1610    1639 ..    1606    1646 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 9.9e-06
   TIGR01166    6 evlkglnlavergevlallGanGaGkstlllhlnGllr 43  
                   +++g nl+ + ge +a+lG++G Gk+ ll++l+  l 
  MMETSP1061-20121228|3774_1 1404 WAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENLT 1441
                  578999***************************98774 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 3.7
   TIGR01166  147 dvllldePtagldpaGaeqlleilrklreeGkt 179 
                   +llldePt+      + ql    r lr  G  
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTMHSEVDEGQLF---RDLRLTGAA 1639
                  689******866555555543...444445555 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.1e-05    0.0019      47      74 ..    1412    1439 ..    1387    1472 .. 0.84
   2 ?   -0.8   0.0         1        95     187     254 ..    1611    1673 ..    1608    1675 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.1e-05
   TIGR00955   47 vaksGellAvlGsSGaGKtTLlnalafr 74  
                  + ksGe++A+lG  G GKt Ll +la+ 
  MMETSP1061-20121228|3774_1 1412 HCKSGEIVAILGEDGNGKTRLLTTLAEN 1439
                  689**********************975 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 1
   TIGR00955  187 lLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254 
                  +L++DEPT+    +      +++++l   g   ++t       + +  d+i+++ +G +v +G+ +e+
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTTMHSEVDE---GQLFRDLRLTGAATVITTN--KWAIGRFADQICVMKNGSIVEMGTHNEL 1673
                  7888888874322222...3556666666665444444..3456667799999999999999988775 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0015      0.13      16      48 ..    1405    1437 ..    1397    1443 .. 0.89
   2 ?    5.2   0.0     0.015       1.3     162     221 ..    1611    1666 ..    1599    1675 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0015
   TIGR02633   16 aldnidlklraGeivslcGenGaGkstlmkvls 48  
                  a+ + +l+ ++Geiv++ Ge+G Gk+ l+  l+
  MMETSP1061-20121228|3774_1 1405 AVRGANLHCKSGEIVAILGEDGNGKTRLLTTLA 1437
                  788999********************9998775 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.015
   TIGR02633  162 llildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhva 221 
                  +l+ldep++  +e +     ++ rdl+  g a v  + k   +   +d+i+v+++G  v 
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTTMHSEVDEG---QLFRDLRLTGAATVITTNKW-AIGRFADQICVMKNGSIVE 1666
                  799*****987766654...568**********9998887.58889**********8764 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.1    0.0068      0.62       2      26 ..    1412    1436 ..    1411    1460 .. 0.85
   2 ?    6.7   0.0     0.012       1.1     133     200 ..    1610    1674 ..    1605    1687 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0068
   TIGR03771    2 svdkGellgllGpnGaGkttllrai 26  
                  + ++Ge++++lG +G Gkt ll ++
  MMETSP1061-20121228|3774_1 1412 HCKSGEIVAILGEDGNGKTRLLTTL 1436
                  5689*****************9887 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.012
   TIGR03771  133 slllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlq 200 
                  s+llldep t   + s+    +lf++l   g a ++tt + a    + +  v+ ng +v  g+ ++l 
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTT---MHSEVDEGQLFRDLRLTGAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELL 1674
                  79******87...556666789****************99988766666666779****999998886 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00024     0.021      16      52 ..    1401    1437 ..    1389    1450 .. 0.85
   2 ?    1.1   0.0      0.58        53     162     219 ..    1611    1664 ..    1603    1665 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00024
   TIGR02982   16 lrkqvlfdinleiepgeiviltGpsGsGkttlltlig 52  
                  +r   +   nl+ ++geiv + G+ G Gkt llt ++
  MMETSP1061-20121228|3774_1 1401 KRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLA 1437
                  455567789************************9764 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.58
   TIGR02982  162 lvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219 
                  ++l dePt+    +s  +  +l+++l r  g++ ++ t    i   ad+i  m++G++
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTTM---HSEVDEGQLFRDL-RLTGAATVITTNKWAIGRFADQICVMKNGSI 1664
                  7889999975...4555556777776.678999999********************87 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.3e-05    0.0039      13      95 ..    1400    1489 ..    1389    1494 .. 0.76
   2 ?   -2.5   0.0       8.1   7.4e+02     159     197 ..    1611    1646 ..    1609    1663 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.3e-05
   TIGR00960   13 gaaelaldnvtvkiekGelvflvGhsGaGkstllklilg..........iekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdr 95  
                  + +  a+ + +++ + Ge+v + G+ G Gk+ ll  + +          +++  +G i v g d++k++ +   +l+r++Gi   d +++ d 
  MMETSP1061-20121228|3774_1 1400 TKRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAEnltfppkrttTTNKVRGLISVGGLDISKWNRK---MLKRRLGIFLSDVRVVADS 1489
                  45567999************************9987754211112111123345899999****9998765...799**********999886 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 8.1
   TIGR00960  159 llladePtgnlddelsrdilelleevnraGttvlvathd 197 
                  +ll dePt+ + +e+ ++  +l+++++ +G + +++t  
  MMETSP1061-20121228|3774_1 1611 ILLLDEPTT-MHSEVDEG--QLFRDLRLTGAATVITTNK 1646
                  799999997.44555554..7899999999988888765 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     6e-05    0.0055      15      47 ..    1405    1437 ..    1390    1451 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6e-05
   TIGR01189   15 lleglsfelaaGealvveGpnGiGKttLLRila 47  
                   ++g +++ ++Ge++++ G++G GKt LL +la
  MMETSP1061-20121228|3774_1 1405 AVRGANLHCKSGEIVAILGEDGNGKTRLLTTLA 1437
                  4677789999********************998 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00024     0.022      20      58 ..    1402    1440 ..    1391    1473 .. 0.84
   2 ?   -0.5   0.0       1.7   1.5e+02     169     201 ..    1610    1639 ..    1602    1648 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00024
   TIGR02324   20 klpvlkevsleveaGelvalsGksGaGkstllkslyanY 58  
                  +  +++  +l+ ++Ge+va+ G+ G Gk  ll +l  n 
  MMETSP1061-20121228|3774_1 1402 RAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENL 1440
                  55688999*************************998774 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 1.7
   TIGR02324  169 PiLLLdePtasLdaanrkvvvelikeakargaa 201 
                   iLLLdePt+   + +     +l ++++ +gaa
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTMHSEVDEG---QLFRDLRLTGAA 1639
                  69*******876555543...566666655555 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0024      0.22      34      70 ..    1400    1436 ..    1392    1447 .. 0.89
   2 ?    3.1   0.0     0.089       8.1     231     255 ..    1652    1676 ..    1647    1690 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0024
   TIGR03415   34 tGlvlgvadasldveeGeilvlmGlsGsGkssllrav 70  
                  t +  +v++a+l+ + Gei+ ++G  G Gk+ ll ++
  MMETSP1061-20121228|3774_1 1400 TKRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTTL 1436
                  6667789**************************9875 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.089
   TIGR03415  231 lGnriaimegGrivqlgtpeeivlk 255 
                    ++i++m++G iv +gt +e++++
  MMETSP1061-20121228|3774_1 1652 FADQICVMKNGSIVEMGTHNELLAR 1676
                  5679*****************9876 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00014     0.013      18      46 ..    1410    1438 ..    1399    1457 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00014
   TIGR01277   18 dlsveaGervailGesGaGkstllnliaG 46  
                  +l  ++Ge+vailGe G Gk+ ll+ +a 
  MMETSP1061-20121228|3774_1 1410 NLHCKSGEIVAILGEDGNGKTRLLTTLAE 1438
                  78999*******************98875 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00038     0.035      21      52 ..    1406    1437 ..    1396    1467 .. 0.88
   2 ?   -2.9   0.0       9.5   8.6e+02     161     220 ..    1610    1665 ..    1608    1666 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00038
   TIGR02211   21 lkgvsleiekgelvaivGssGsGkstllhllg 52  
                  ++g +l+ ++ge+vai+G+ G Gk+ ll +l+
  MMETSP1061-20121228|3774_1 1406 VRGANLHCKSGEIVAILGEDGNGKTRLLTTLA 1437
                  5788999*********************9997 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 9.5
   TIGR02211  161 klvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220 
                  +++l dePt+   +    ++f+   +l+  ++ a ++ t    + + +d+   +k+g+++
  MMETSP1061-20121228|3774_1 1610 SILLLDEPTTMHSEVDEGQLFR---DLR-LTGAATVITTNKWAIGRFADQICVMKNGSIV 1665
                  5788899998777666666554...443.4566777888888888888888889998875 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.057       5.2      16      46 ..    1406    1436 ..    1397    1442 .. 0.87
   2 ?    5.5   0.0      0.02       1.8     202     240 ..    1642    1680 ..    1605    1684 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.057
   TIGR03005   16 ldglelevaaGekvaliGpsGsGkstilril 46  
                  + g++l+ ++Ge va++G  G Gk+ +l  l
  MMETSP1061-20121228|3774_1 1406 VRGANLHCKSGEIVAILGEDGNGKTRLLTTL 1436
                  5689999******************998766 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.02
   TIGR03005  202 lvthemgfarefadrvlffdkGkiveeGkpdeifrk.pke 240 
                  + t +      fad+++ +++G ive G  +e++ + p++
  MMETSP1061-20121228|3774_1 1642 ITTNKWAI-GRFADQICVMKNGSIVEMGTHNELLARgPQQ 1680
                  33444443.46******************99987541554 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.003      0.27      15      54 ..    1405    1444 ..    1389    1456 .. 0.78
   2 ?    1.6   0.0      0.19        17     476     517 ..    1634    1675 ..    1607    1682 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.003
   TIGR03269   15 vlknisleleeGevlGilGksGaGksvllhllrGldeyep 54  
                  +++  +l+ + Ge++ ilG+ G Gk+ ll  l     ++p
  MMETSP1061-20121228|3774_1 1405 AVRGANLHCKSGEIVAILGEDGNGKTRLLTTLAENLTFPP 1444
                  56788999999***************99998876666665 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.19
   TIGR03269  476 eleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeive 517 
                   l  +  +++ +   +    d++++m++G iv++G  +e+++
  MMETSP1061-20121228|3774_1 1634 RLTGAATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLA 1675
                  344444444444455555666677777777777776666654 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.027       2.5      14      50 ..    1399    1435 ..    1392    1474 .. 0.87
   2 ?    4.5   0.0     0.034       3.1     185     235 ..    1628    1681 ..    1593    1692 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.027
   TIGR02314   14 gdkkikaldnvslfvpkgqifgvigasgagkstlirc 50  
                  ++k+  a+   +l+   g+i+ ++g  g gk+ l+  
  MMETSP1061-20121228|3774_1 1399 ATKRAWAVRGANLHCKSGEIVAILGEDGNGKTRLLTT 1435
                  6788899999*********************999865 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.034
   TIGR02314  185 einrrlglt..illithemdvvkricdevavidkgeliekgtvseifsh.pkte 235 
                  ++ r l lt    +it +   + r  d++ v+++g ++e gt +e++++ p+ +
  MMETSP1061-20121228|3774_1 1628 QLFRDLRLTgaATVITTNKWAIGRFADQICVMKNGSIVEMGTHNELLARgPQQS 1681
                  4455555553256899999999***********************998635554 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.02       1.9      18      45 ..    1411    1438 ..    1403    1488 .. 0.82
   2 ?    3.4   0.0     0.086       7.8     195     223 ..    1649    1677 ..    1639    1691 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.02
   TIGR02142   18 lelpgkgvtalFGrsGsGktslirliaG 45  
                  l+ ++ +++a+ G+ G Gkt l+  +a 
  MMETSP1061-20121228|3774_1 1411 LHCKSGEIVAILGEDGNGKTRLLTTLAE 1438
                  5566679****************99874 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.086
   TIGR02142  195 varladrvvvledGrvkaagkleevlask 223 
                  + r+ad++ v+++G +  +g+ +e+la+ 
  MMETSP1061-20121228|3774_1 1649 IGRFADQICVMKNGSIVEMGTHNELLARG 1677
                  7799********************99986 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   0.00049     0.044     785     814 ..    1412    1441 ..    1342    1447 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00049
   TIGR00956  785 wvkPGkltALmGasGAGkttLlnvLaeRvt 814 
                  ++k G++ A++G+ G Gkt Ll +Lae +t
  MMETSP1061-20121228|3774_1 1412 HCKSGEIVAILGEDGNGKTRLLTTLAENLT 1441
                  6899*********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1693 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        70  (0.0170648); expected 4.1 (0.001)
Passed Fwd filter:                        46  (0.011214); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              45  [number of targets reported over threshold]
# CPU time: 1.30u 0.23s 00:00:01.53 Elapsed: 00:00:01.27
# Mc/sec: 1759.51
//
Query:       MMETSP1061-20121228|3775_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.09s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 1039.41
//
Query:       MMETSP1061-20121228|3779_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1959.53
//
Query:       MMETSP1061-20121228|3784_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1061-20121228|3777_1  [L=1108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.11s 00:00:00.61 Elapsed: 00:00:00.43
# Mc/sec: 3401.02
//
Query:       MMETSP1061-20121228|3786_1  [L=679]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.44
# Mc/sec: 2036.83
//
Query:       MMETSP1061-20121228|3788_1  [L=1124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.13s 00:00:00.57 Elapsed: 00:00:00.44
# Mc/sec: 3371.72
//
Query:       MMETSP1061-20121228|3785_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-12   43.0   0.0    4.1e-12   42.6   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
      0.014   12.7   0.1      0.032   11.5   0.1    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0     2e-15   4.1e-12      37     180 ..      98     250 ..      85     268 .. 0.67

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 2e-15
   TIGR03903  37 hPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpa....aetgrLmlqvLDalaaahd.aGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatlt.......rttevlGsPaYaaPeqLRgepvtaksDlYaWGLivl 180
                 hP++ +  ++   +++ +  + e+ eG  l + +     L +    ++ + ++  +LD+l+  hd  G+vhRDLk  n m   + + s +     Gi+  l g++ +d    t       + +  lG+P Y aPe L +ep  +k D+++ G+i  
  MMETSP1061-20121228|3785_1  98 HPHLLEF-EKAYEDNDEVHIITELLEGGDLYDAVIEMTKLKSffrdEDAAWMVRNILDGLSYCHDvTGIVHRDLKASNFMFKHKTDISSSN--KQGISENLRGIKIIDYGLSTkidpetgQVEGCLGTPYYVAPEVLTEEPYDSKCDVWSAGVIAY 250
                 6666554.33333445677777777777776665555555432221566667778*********857*************87654433332..34666666666555543222101100034568***************************9965 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   1.6e-05     0.032      79     126 ..     131     180 ..     107     213 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.6e-05
   TIGR03724  79 iegkklkdlleekel.ellkevGelvgklHk.agivhgDlttsNiivkdd 126
                 ie +klk  ++++    +++++ + ++ +H+ +givh Dl  sN+++k++
  MMETSP1061-20121228|3785_1 131 IEMTKLKSFFRDEDAaWMVRNILDGLSYCHDvTGIVHRDLKASNFMFKHK 180
                 5555666666554448999***********8569************9743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1812.91
//
Query:       MMETSP1061-20121228|3791_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-26   88.3   0.0    1.3e-25   87.9   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    4.4e-06   24.2   0.1      0.014   12.8   0.0    2.1  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
    2.2e-05   21.5   0.0    7.4e-05   19.7   0.0    1.7  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    5.2e-05   20.1   0.0    7.1e-05   19.6   0.0    1.1  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
      6e-05   21.2   0.0    0.00015   19.9   0.0    1.7  1  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0012   15.9   0.0      0.002   15.1   0.0    1.3  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0015   16.0   0.0     0.0031   15.0   0.0    1.4  1  TIGR03263 guanyl_kin: guanylate kinase
  ------ inclusion threshold ------
      0.027   12.0   0.1        0.2    9.2   0.1    2.0  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   2.6e-28   1.3e-25       4     161 ..      15     175 ..      13     177 .. 0.89

  Alignments for each domain:
  == domain 1    score: 87.9 bits;  conditional E-value: 2.6e-28
   TIGR00231   4 ikivivGhvdvGKstLlnsllknki.siteskp...gvtrdyvteqieedGktykvnllDTaGqedfdai.rrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfkl 161
                 +kiv++G+++vGK++L  +l+  ++  ++ + +   g+++d+ +   + +G ++k++++DTaGqe+f+++  + y+r++++++ v+di+++ +++e+  e++  +++++  +++   +lv+nK Dl++  ++ ++ +  f + ++  + e+sa+ g+n++++f+ 
  MMETSP1061-20121228|3791_1  15 YKIVMLGDSGVGKTSLVARLTNPDRpLNHDI-SatmGIEFDTQML-DTPQG-KVKAQIWDTAGQERFARVlLPTYFRKAKGVILVYDITNA-KSFESLSERWMAQLNDHSNADDLAKLLVGNKSDLESsrEVTQEKAMAFCQEYGMEFLETSAKSGDNVLAAFEK 175
                 79*******************9985223333.2455888888886.67777.78*************98626999****************.************************************99999999999**********************9985 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.7e-05     0.014     126     156 ..      18      48 ..      15      79 .. 0.80
   2 !    9.3   0.0   0.00031      0.16      53     120 ..     108     176 ..      88     181 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.7e-05
   TIGR00157 126 vfaGqSGVGKSSLiNlldpevkqkvkevsek 156
                 v+ G SGVGK SL+ +l+   +   +++s +
  MMETSP1061-20121228|3791_1  18 VMLGDSGVGKTSLVARLTNPDRPLNHDISAT 48 
                 89*************9987655555566655 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00031
   TIGR00157  53 lslalldrlLvvaeakniepiivlnkkdlleeedae.keqleelknlgYkvllvsvkneegleelkekl 120
                 ls+  + +l  + +a ++++++v nk dl ++ ++  ++ +   +++g + l +s+k+ +++   +ekl
  MMETSP1061-20121228|3791_1 108 LSERWMAQLNDHSNADDLAKLLVGNKSDLESSREVTqEKAMAFCQEYGMEFLETSAKSGDNVLAAFEKL 176
                 5555555666678999*************99988873666777899**************998877776 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.5e-07   7.4e-05     176     346 ..      15     180 ..       3     191 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.5e-07
   TIGR03594 176 ikiaiiGrpNvGKStLvNallgeervivsdia...GtTrDsidievevkgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDat..egiseqDlk....iaglileegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevy 346
                  ki ++G   vGK +Lv +l++ +r + +di+   G+  D+   ++   + k ++ DTAG  r ++v             +  ++a+ v+lv D+t  +++++  ++    + +    +  a ++v NK Dl     + +e+++e    + +   ++++ +SA++g +v   +e++  ++
  MMETSP1061-20121228|3791_1  15 YKIVMLGDSGVGKTSLVARLTNPDRPLNHDISatmGIEFDTQMLDTPQGKVKAQIWDTAGQERFARVL----------LPTYFRKAKGVILVYDITnaKSFESLSERwmaqLNDHSNADDLAKLLVGNKSDLE----SSREVTQEKAMAFCQEYGMEFLETSAKSGDNVLAAFEKLIGIV 180
                 6999***********************88876222556677777778889999*******98888875..........2334567777777777763345666655510004444455567899999999999....4445555555667777789999999999999988888776555 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.4e-07   7.1e-05       8     169 ..      15     182 ..       9     192 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.4e-07
   TIGR03918   8 lhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpv..vliDTaGldD.egeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke....keklekkkeeevvlvsakekegieelkealiellpe 169
                  +i+++G   +GK sl+  lt+ d  +  d+  t       +m  +p G v   + DTaG +  +  L  +  +k++ v+   d++     ++   e++  +l ++ ++ ++  ++v nk+dl+++++     + +  ++ ++e++ +sak+++++ +  e+li  +++
  MMETSP1061-20121228|3791_1  15 YKIVMLGDSGVGKTSLVARLTNPDRPLNHDISATMGIEFDTQMLDTPQGKVkaQIWDTAGQERfARVLLPTYFRKAKGVILVYDITNAKSFES-LSERWMAQLNDHSNADDLAKLLVGNKSDLESSREVtqekAMAFCQEYGMEFLETSAKSGDNVLAAFEKLIGIVHD 182
                 579*******************************99999999999****9944599***9887344456666777777776666654333332.3555556666666778899*********99877654333445667889999*********998888888877655 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.8e-07   0.00015       2      55 ..      16      73 ..      15     120 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.8e-07
   TIGR02528  2 rimliGsvgcGkttLtqaLkgee....ikykktqaveykdkaiDtPGeylenrryYsa 55
                +i+++G +g Gkt+L+ +L++ +         t  +e+  +++DtP   ++ + + +a
  MMETSP1061-20121228|3791_1 16 KIVMLGDSGVGKTSLVARLTNPDrplnHDISATMGIEFDTQMLDTPQGKVKAQIWDTA 73
                899****************997622114567899************888888777655 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     4e-06     0.002     210     340 ..      15     148 ..      11     177 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4e-06
   TIGR00450 210 lklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedlel...eG.ilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd....eliitlkkkkkdlllvlNKiDLaeleilkselkl 340
                 +k++++G+  vGK SL+  l + dr +  di  t     + ++ l   +G ++ ++ DtAG     +   ++ +   ++ +k   lv  + +a++ +   +    +l ++++  +   llv NK DL + ++ ++e+ +
  MMETSP1061-20121228|3791_1  15 YKIVMLGDSGVGKTSLVARLTNPDRPLNHDISATMGIEFDTQM-LdtpQGkVKAQIWDTAGQ----ERFARVLLPTYFRKAKGVILVYDITNAKSFESLSErwmaQLNDHSNADDLAKLLVGNKSDLESSREVTQEKAM 148
                 69*************************9999877653333333.112234267899****95....45555555555555555445555555544333333112134455666677789*********76666665554 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     6e-06    0.0031       4      35 ..      17      48 ..      15      51 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6e-06
   TIGR03263  4 ivisgpsGvGKstlvkklleekeelklsvSat 35
                iv+ g sGvGK++lv++l++ ++ l+  +Sat
  MMETSP1061-20121228|3791_1 17 IVMLGDSGVGKTSLVARLTNPDRPLNHDISAT 48
                7999**************************99 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.1   0.00038       0.2      19      42 ..      15      38 ..       3     176 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00038
   TIGR03598 19 peiafaGrSNvGKSsliNaLtnrk 42
                 +i+++G S vGK sl+  Ltn  
  MMETSP1061-20121228|3791_1 15 YKIVMLGDSGVGKTSLVARLTNPD 38
                6799****************9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      203  (0.0494881); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1030.37
//
Query:       MMETSP1061-20121228|3796_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 339.40
//
Query:       MMETSP1061-20121228|3792_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.69    6.0   9.9        0.9    5.6   6.9    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   6.9   0.00022       0.9     280     436 ..      15     243 ..       3     260 .. 0.38

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00022
   TIGR00934 280 iseanslaaesdeesses..............................................rriqekikrrlstssiekns..........................................qqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngn....kkdasksneseevsldseenayptyndee 436
                  s++ns  +++ +++s+s                                              +                                                             +  + r   ++   ++ a+  +  ++++  ++++l+++++ + +q+  +++ ++++ ++k++ +r++++ + + +  +  s+r ++ ++     +++as s es++ ++ se    ++ +d+e
  MMETSP1061-20121228|3792_1  15 HSNSNSDSTSTSKSKSKStltltskskstshpdtnakilsptdrdvlcgrgkgirfhpgnvlfnK------------------LlkqhypdygmtpkgskleivkkimatiqegqaggtgrfleqdNGGFYREIGEERAINKTAQAFRDIRVTKEKKQQQLKHSQKRQ-QQRQQQQQQHQKHLTRKMLIDRDCHNSVSS-GDDSAASRRPTFRQRIamlhRHNASASAESDRENSVSEAGDDASVSDTE 243
                 34444433333333344422222222223333333344444444444444444444444444440..................0444444444444444444444445554444444444555433111222222222222333333333333333333333333333.223333333333444445555555544333.3333334444444433344444444444444444444432222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       646  (0.157484); expected 82.0 (0.02)
Passed bias filter:                      265  (0.0646026); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.52
# Mc/sec: 672.64
//
Query:       MMETSP1061-20121228|3801_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.45
# Mc/sec: 771.40
//
Query:       MMETSP1061-20121228|3802_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.17
# Mc/sec: 1024.86
//
Query:       MMETSP1061-20121228|3809_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00091   16.3   0.2     0.0011   16.1   0.1    1.0  1  TIGR00394 lac_pts_IIC: PTS system, lactose-specific IIC component


Domain annotation for each model (and alignments):
>> TIGR00394  lac_pts_IIC: PTS system, lactose-specific IIC component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   2.7e-07    0.0011     307     386 ..      12      94 ..       2     101 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.7e-07
   TIGR00394 307 vptffgvnepi....lfgapivlnpvlfipfilapivnvwlfklfvevlglnslsanlpwttpgplgivlgtgfavlsfvlall 386
                 v +  gvn       l+g p+ +   + +pf+ + +v +  + l+++       +  +pw +p    ++l t+ a  +fvl + 
  MMETSP1061-20121228|3809_1  12 VDVNVGVNVETdgfgLLGLPLDIGTTVRLPFLYTILVAISSLLLLLSL-SSGLRLFRIPWSVPDLATVILRTTGAARAFVLPAA 94 
                 556666664332333899********************9877776654.35556789***********************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.23s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 823.61
//
Query:       MMETSP1061-20121228|3807_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 430.70
//
Query:       MMETSP1061-20121228|3804_1  [L=738]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 2213.82
//
Query:       MMETSP1061-20121228|3815_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|3817_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.39
# Mc/sec: 301.21
//
Query:       MMETSP1061-20121228|3819_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   11.5   0.0      0.045   11.3   0.0    1.1  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
      0.037   11.1   0.0      0.043   10.9   0.0    1.1  1  TIGR01921 DAP-DH: diaminopimelate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.2e-05     0.045       1      33 [.      40      74 ..      40      81 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.2e-05
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkG..lrVlllekke 33
                yD+v++G G aG sa ++l+++   ++V+l++  +
  MMETSP1061-20121228|3819_1 40 YDFVIIGYGNAGQSALRTLQEQCpdAKVALVDPLR 74
                9***********99999999885335677777655 PP

>> TIGR01921  DAP-DH: diaminopimelate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.1e-05     0.043       7      39 ..      43      76 ..      39      92 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.1e-05
   TIGR01921  7 aivGyGnlGksvekais.qaPdlelvgvfsrrda 39
                 i+GyGn G+s ++ ++ q Pd  ++ v   r +
  MMETSP1061-20121228|3819_1 43 VIIGYGNAGQSALRTLQeQCPDAKVALVDPLRSP 76
                59**********9999835699998877554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 613.75
//
Query:       MMETSP1061-20121228|3808_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.6   0.0     0.0033   14.6   0.0    1.4  1  TIGR00065 ftsZ: cell division protein FtsZ


Domain annotation for each model (and alignments):
>> TIGR00065  ftsZ: cell division protein FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   8.1e-07    0.0033      84     219 ..     113     257 ..      92     263 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.1e-07
   TIGR00065  84 GrkaAeeskdeikklle...gadlvfitaGlGgGTGTGaaPvvak.iak...elgiLtvavvtkPfkfEgkkrrkkAeeGleeLkkavDslivipNdkllevvpk.lpl.keafkvadevlvkavkgiselItkpglinvDFaDv 219
                 G+++ ++  d+i+kl +   g +  ++    GgGTG G    + + ++     +  L  av   P          +     ++L +++D    ++N+ l +v+++ l + k  +   + ++++ ++ ++  +  +g +nvD    
  MMETSP1061-20121228|3808_1 113 GKEIVDQVLDRIRKLADtctGLQGFLVFHATGGGTGSGLGSLLLErLSVdygRKSKLSFAVSPSPQISTAVVEPYNSVLSTHALLEHTDCTFCLDNEALYDVCNRqLNIsKPTYTNLNRLIAQVISSLTASLRFDGALNVDVTEF 257
                 66666666666666544111444444455556777777666555414431113456889999999888888888889999999*********************996662569****************************8765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2502.29
//
Query:       MMETSP1061-20121228|3820_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.1   0.3      0.029   12.3   0.2    1.4  1  TIGR01909 C_GCAxxG_C_C: C_GCAxxG_C_C family protein


Domain annotation for each model (and alignments):
>> TIGR01909  C_GCAxxG_C_C: C_GCAxxG_C_C family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2     7e-06     0.029      22      72 ..      60     108 ..      54     109 .] 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7e-06
   TIGR01909  22 ealklasgfggGvaGagsiCGAvtGavmvlslifgmegkeekvnktyalak 72 
                 + ++  ++ +gGva a    GA  Gav vls+      +++k  +t+a a+
  MMETSP1061-20121228|3820_1  60 DRVHHKTTVAGGVAVAVAFAGAFAGAV-VLSVACL-ASSNRKRTRTRARAR 108
                 5566778999****9999*******98.5676666.677777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 532.84
//
Query:       MMETSP1061-20121228|3822_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 464.83
//
Query:       MMETSP1061-20121228|3816_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1942.13
//
Query:       MMETSP1061-20121228|3818_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.10s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 1208.53
//
Query:       MMETSP1061-20121228|3823_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 902.52
//
Query:       MMETSP1061-20121228|3829_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 521.67
//
Query:       MMETSP1061-20121228|3826_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 1338.75
//
Query:       MMETSP1061-20121228|3825_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.09s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 1071.75
//
Query:       MMETSP1061-20121228|3831_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    5.8   4.9        2.5    5.2   3.4    1.2  1  TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL


Domain annotation for each model (and alignments):
>> TIGR02783  TrbL_P: P-type conjugative transfer protein TrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   3.4    0.0006       2.5     255     296 ..     199     240 ..     186     242 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0006
   TIGR02783 255 sgasvlgaggavaaaaavagvaaaggaalaaGalsaaagasg 296
                 +g  +   g+av a  ++a+ aa gg +  a   sa++g++ 
  MMETSP1061-20121228|3831_1 199 QGGDQSTGGAAVTATPSGATPAAGGGTLTLADLQSAMGGVQT 240
                 56666678999999999***999999999999*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.10s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1596.64
//
Query:       MMETSP1061-20121228|3834_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0052   13.9   3.2     0.0052   13.9   2.2    3.4  3  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   8.2      0.86   3.5e+03     108     163 ..     105     159 ..      92     172 .. 0.46
   2 ?    0.0   1.0      0.02        84     134     191 ..     208     272 ..     169     286 .. 0.46
   3 !   13.9   2.2   1.3e-06    0.0052      43      69 ..     292     318 ..     288     321 .. 0.94

  Alignments for each domain:
  == domain 1    score: -5.3 bits;  conditional E-value: 0.86
   TIGR00599 108 esedlaapessskkklieeeeakgvdeeseddlrsasssraaakkktadilqlssd 163
                 +s+ ++  +s s+ ++ ++ + ++ d+ ++dd  +++ s++++ +++++  q++++
  MMETSP1061-20121228|3834_1 105 QSQSQSQTQSQSQTQT-QTIQNDDDDDDDDDDANTNKPSKKNSGREKTNEQQQQQQ 159
                 2222222222222222.222222333444444455555555555555544444443 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.02
   TIGR00599 134 eeseddlrsasssraaa.kkktadilql..ssdtskrndkdyrse....kpdedlvqCPiCsqlv 191
                 e+s +d rs+s  r+++ +   ++i+ l   +d+  +  +++r++        d  +C iC + +
  MMETSP1061-20121228|3834_1 208 ENSRQDARSTSGGRNSSiRSLLTSIRLLvfFKDPDVSVRSKKREKkaskAAMKDQTSCSICLEDY 272
                 22222333333333332022333332221123333322222222212223445667777777665 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 1.3e-06
   TIGR00599  43 sCsHtFCslCiRrcLseepkCPlCrae 69 
                  C+H F   Ci ++L+ + +CPlCra+
  MMETSP1061-20121228|3834_1 292 HCNHCFHEACILEWLQGHDECPLCRAD 318
                 5************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       348  (0.0848367); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.19s 00:00:00.56 Elapsed: 00:00:00.48
# Mc/sec: 890.93
//
Query:       MMETSP1061-20121228|3838_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 679.94
//
Query:       MMETSP1061-20121228|3824_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.46
# Mc/sec: 1159.21
//
Query:       MMETSP1061-20121228|3849_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.4    4.7  13.0        3.9    4.0   9.0    1.2  1  TIGR03154 sulfolob_CbsA: cytochrome b558/566, subunit A


Domain annotation for each model (and alignments):
>> TIGR03154  sulfolob_CbsA: cytochrome b558/566, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   9.0   0.00096       3.9     412     444 ..      61      94 ..      54     107 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.00096
   TIGR03154 412 lvttpptstttstssvssvttisaaips.ttvyv 444
                  vttp t ttt+t+++s++t++s++  + tt+y+
  MMETSP1061-20121228|3849_1  61 AVTTPATGTTTTTTATSTTTSTSTSTTTtTTLYM 94 
                 69**********9988888888876654155664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 854.63
//
Query:       MMETSP1061-20121228|3846_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 2181.94
//
Query:       MMETSP1061-20121228|3847_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       350  (0.0853242); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.25
# Mc/sec: 2381.08
//
Query:       MMETSP1061-20121228|3844_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-84  279.8  22.2    1.5e-61  206.4  14.1    2.7  2  TIGR00906 2A0303: cationic amino acid transport permease
      1e-81  272.9  24.4    6.6e-65  217.5  13.0    2.1  2  TIGR00909 2A0306: amino acid transporter
    3.3e-13   46.8   9.4    3.3e-13   46.8   6.5    2.9  2  TIGR00911 2A0308: L-type amino acid transporter
    5.8e-09   33.1  12.3    5.8e-09   33.1   8.5    1.7  2  TIGR03428 ureacarb_perm: permease, urea carboxylase system
    4.9e-06   23.5  24.9      0.004   13.9  17.3    3.0  1  TIGR00908 2A0305: ethanolamine permease
    7.4e-05   20.1   3.4    7.4e-05   20.1   2.3    2.1  2  TIGR00912 2A0309: spore germination protein (amino acid permease)
    0.00039   16.5   9.5    0.00058   15.9   6.6    1.3  1  TIGR00930 2a30: K-Cl cotransporter
    0.00047   16.8  19.7      0.018   11.6  13.6    2.3  1  TIGR01773 GABAperm: GABA permease


Domain annotation for each model (and alignments):
>> TIGR00906  2A0303: cationic amino acid transport permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.4  14.1   2.8e-64   1.5e-61      27     323 ..      33     313 ..      27     321 .. 0.91
   2 !   71.5   0.0     2e-23     1e-20     322     448 ..     343     469 ..     339     539 .. 0.75

  Alignments for each domain:
  == domain 1    score: 206.4 bits;  conditional E-value: 2.8e-64
   TIGR00906  27 sklkrclttldlialgvGsvlGaGvyvlaGevarndsGPaivlsfliaalaavlaglcyaefgarvPkaGsaylysyvtvGelwafitgwnlileyviGtaavarawsatfdellskki.geflrtvvk...lnedgklaeypdflavililllavllalGvkesarvnkiftiinllvllfvivaGfvkadvknwkiteeflknlsasedgtsiyGaggflPyGvrGvlsgaatcfyafvGfdaiattgeevknPqkaiPigivtsllvifvayvlvsaaltlmlPyqlldedaplavaf 323
                 + l+r+l+ +dli+ g+Gs +GaG+y+laG  a+  +GPai lsfl ++l++ l++l+yaef+  +P +Gsay+y+yv  Ge++af +gwnlil y   ++  araw+ +  ++l k    ++ + +     l  + + + +  +l+++++++ + +l  G+k+s+++n+++ + nl +l++++v+ +  ++++  +   + l                 f P G+ G+l ga  +fyaf+Gfd +a  +eev  P+k++Pigiv+sll+ +++y++v+ a++ m P   l e +pl  a 
  MMETSP1061-20121228|3844_1  33 ASLRRTLNAVDLILYGLGSAVGAGIYILAGIGAK-LAGPAISLSFLGCGLSCTLTALAYAEFSSLIPASGSAYIYTYVAFGEVYAFCVGWNLILGYGFTASVAARAWADYVGDFLVKITgADWIIPYCTevvLFPSVSPSYTCSPLSLVIVIVSTIVLLRGAKDSSTFNNLICVTNLCILALIVVSALASGSIEATD---NLL----------------PFAPSGMPGILRGAGLVFYAFIGFDMVASLSEEVVHPEKNMPIGIVGSLLLSTLIYCGVTLAVVGMTPLPFLGETTPLVNAI 313
                 5799**************************9998.59*************************************************************99999*******98877776516898877651113333445677899999999999999999********************************98655...544................5****************************************************************************98885 PP

  == domain 2    score: 71.5 bits;  conditional E-value: 2e-23
   TIGR00906 322 afeyvgwevakyivavGalaalstsllgsafalprvvyamaedgllfkflakinsktktPinatvvsgaiaallaflfdlkalvdllsigtllayslvavcvlvlryqpglvyesakttdekdtlds 448
                 afe         +v+ Ga  +l+++ ++s +++pr+ y ma dgl f++++++n kt+t     +++g +aa +a ++ l+al++l+s+gtl+++++v + v++lr       +s  + d ++t++ 
  MMETSP1061-20121228|3844_1 343 AFENPALAFVSKVVSGGAGFGLMAACFTSLMGQPRIFYRMALDGLWFPLFSRVNPKTQTMSEGILMTGFVAAWIACFVPLEALANLISLGTLMVFTFVDAGVILLRLGNVSQTKSQSSLDSENTIED 469
                 6777777778889*********************************************************************************************876333333333344444433 PP

>> TIGR00909  2A0306: amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.5  13.0   1.3e-67   6.6e-65       1     273 [.      35     317 ..      35     331 .. 0.90
   2 !   58.7   0.2     2e-19     1e-16     276     376 ..     350     450 ..     343     460 .. 0.95

  Alignments for each domain:
  == domain 1    score: 217.5 bits;  conditional E-value: 1.3e-67
   TIGR00909   1 LrreLglfdlvllgigaiiGtgifvvtgiaagkagPavilsfllagliallvaLvyaelaaalPvaGsvYtyayealGelvafiiGwvlileytvavavvavgfseyleelleg.vG....lelPavltakpgdggvlnlp..allivllltiilllGvkeskkvnsilvv..lkvlavllFvalgaiklkst.nytpfmPlGlggvlaaaalvFlafiGFeivstaaeevkdperdipkaiilslivvtllYvlvaavvlGvvPfrvlagseaelslvkvsa 273
                 Lrr+L + dl+l g+g+ +G+gi++++gi+a  agPa+ lsfl  gl ++l+aL+yae+++ +P +Gs+Y+y+y+a+Ge+ af +Gw lil y+ +++v a +++ y+ ++l+   G    ++  ++++  p+ +  +  +  +l+iv++ ti+ll+G+k+s + n+++ v  l +la+++  al+   +++t n  pf+P G+ g+l +a+lvF+afiGF++v++ +eev  pe+++p++i+ sl++ tl+Y  v+  v+G+ P   l ++++ + ++  +a
  MMETSP1061-20121228|3844_1  35 LRRTLNAVDLILYGLGSAVGAGIYILAGIGAKLAGPAISLSFLGCGLSCTLTALAYAEFSSLIPASGSAYIYTYVAFGEVYAFCVGWNLILGYGFTASVAARAWADYVGDFLVKiTGadwiIPYCTEVVLFPSVSPSYTCSplSLVIVIVSTIVLLRGAKDSSTFNNLICVtnLCILALIVVSALASGSIEATdNLLPFAPSGMPGILRGAGLVFYAFIGFDMVASLSEEVVHPEKNMPIGIVGSLLLSTLIYCGVTLAVVGMTPLPFLGETTPLVNAILANA 317
                 89*************************************************************************************************************9986664443555678888899887555542388999999****************998833556667777777777888778*************************************************************************9999999999998875 PP

  == domain 2    score: 58.7 bits;  conditional E-value: 2e-19
   TIGR00909 276 klgalilaagavvsiasvllatlygtsRvlfAlsrdGllpkslskvhektktPyvailifsllaallaslvpleelaeltslglliafvlvavaviilRrk 376
                  +++ +++ ga ++++++  + l+g+ R+++ ++ dGl    +s+v++kt+t    il+ + +aa +a +vple+la+l slg+l+ f  v   vi+lR+ 
  MMETSP1061-20121228|3844_1 350 AFVSKVVSGGAGFGLMAACFTSLMGQPRIFYRMALDGLWFPLFSRVNPKTQTMSEGILMTGFVAAWIACFVPLEALANLISLGTLMVFTFVDAGVILLRLG 450
                 68899**********************************************************************************************75 PP

>> TIGR00911  2A0308: L-type amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   6.5   6.4e-16   3.3e-13      20     295 ..       8     295 ..       2     306 .. 0.72
   2 !    3.6   1.0     0.008       4.1     313     418 ..     344     449 ..     313     460 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 6.4e-16
   TIGR00911  20 essatekelsaetvdadegfea...valkkeitllsgvsiivgtiiGsGiFvspkgvlkeagsvGlalivWavtgilsivGalvYaElGttipksGGeyaYllevfgklkaFlklwiell.......virpgsaav.....valvfatylL....kPvfadcevpelairlvavlvvllltlvnslsvklatrvqdiltaakllallliiilGlvqlgkgeveslepknaFegteasvgelvlalysglfaygGwnylnfvteEvknPvrtlpiaiiislvivtlvYvltniAYf 295
                 +   ++k+ls+   ++ +g+++    +l++++  ++ +   +g  +G+Gi++ + g+  +   + ++l +   +g+  ++ al+YaE+   ip sG  y Y    fg++ aF   w  +l       v   ++a       v ++ a +++    + v   ++ p  +   ++ + v++ t+v     k +   ++++ ++ l +l+li++    +l+ g +e  +    F    + + ++  +   +++a+ G+  +  + eEv+ P++++pi i+ sl + tl+Y  + +A +
  MMETSP1061-20121228|3844_1   8 DAMHRKKSLSEARFNGGDGGGDpatASLRRTLNAVDLILYGLGSAVGAGIYILA-GIGAKLAGPAISLSF-LGCGLSCTLTALAYAEFSSLIPASGSAYIYTYVAFGEVYAFCVGWNLILgygftasVAARAWADYvgdflVKITGADWIIpyctEVVLFPSVSPSYTCSPLSLVIVIVSTIVLLRGAKDSSTFNNLICVTNLCILALIVVS---ALASGSIEATDNLLPFAP--SGMPGILRGAGLVFYAFIGFDMVASLSEEVVHPEKNMPIGIVGSLLLSTLIYCGVTLAVV 295
                 566788888888888877755544477888888777777778**********86.777777778888765.67***************************************9999644311111112222222211111123333333331111222333344555555666666666666666677888899999999999999999876...678888888865566654..5567788888889***************************************99988865 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.008
   TIGR00911 313 FaerllGvvklivpvlvglsafGsvngslFsssRlifvaarEGhlPsllsmihvkkltplpsllivctltllaalsgDiyslinlisfanslivalavagllylry 418
                 F +  l  v+++v+   g   + +  +sl  + R+++  a +G    l s +++k  t    +l++  ++  +a +  +  l nlis  + ++ + + ag++ lr 
  MMETSP1061-20121228|3844_1 344 FENPALAFVSKVVSGGAGFGLMAACFTSLMGQPRIFYRMALDGLWFPLFSRVNPKTQTMSEGILMTGFVAAWIACFVPLEALANLISLGTLMVFTFVDAGVILLRL 449
                 5566666666666666777777777889999*************9999***********9*****************************999999999****9996 PP

>> TIGR03428  ureacarb_perm: permease, urea carboxylase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   8.5   1.1e-11   5.8e-09      32     261 ..      55     287 ..      35     314 .. 0.81
   2 ?   -4.1   0.1       2.2   1.1e+03     286     314 ..     508     538 ..     503     542 .. 0.61

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.1e-11
   TIGR03428  32 ttifqlfglgygfagpaffwtwpvvlvgqllvalnfaelaarypisgaiyqwsrrlggevvgwfagwlmilaqivtaaaaaialqv....vlpniwsgfqiigedsa...ltspsgaanavllgsvllvlttlinvigvklmsrvntigvtieivgvvavigvlfthaqrgpevvldtsvtaassgavgaflvsglmaayvmvgfdsagelaeetknprkvaprtilsalsvsalgg 261
                 + i+ l g+g  +agpa+  ++    +   l al++ae+++  p sg+ y ++    gev  +  gw +il    ta+ aa a        l +i     ii   +    + s s +  +  l  v+++++t++   g k  s  n++  + ++  ++a+i   +++   g     d  +  a sg+ g    +gl   y ++gfd    l+ee   p k  p  i  +l +s+l  
  MMETSP1061-20121228|3844_1  55 AGIYILAGIGAKLAGPAISLSFLGCGLSCTLTALAYAEFSSLIPASGSAYIYTYVAFGEVYAFCVGWNLILGYGFTASVAARAWADyvgdFLVKITGADWIIPYCTEvvlFPSVSPSYTCSPLSLVIVIVSTIVLLRGAKDSSTFNNLICVTNL-CILALIV--VSALASGSIEATDNLLPFAPSGMPGILRGAGL-VFYAFIGFDMVASLSEEVVHPEKNMPIGIVGSLLLSTLIY 287
                 579999***********************************************************************99998865411224666766666775443311145788888999999*********************998666665.4555553..45666677667777777778888777666665.68********************************999743 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 2.2
   TIGR03428 286 pyvls.avlespwgtl.llvdvaiailvctl 314
                 +++ls   l+s  g++ ll   aia+l   l
  MMETSP1061-20121228|3844_1 508 SFILSnNSLDSLSGRVpLLFFSAIALLCGVL 538
                 5666515689999988555666777654444 PP

>> TIGR00908  2A0305: ethanolamine permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9  17.3   7.8e-06     0.004      56     266 ..      86     313 ..      32     453 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.8e-06
   TIGR00908  56 fifslaelataiPkagGsfefarrafGplGGflaGvailvefvfapp....aialaiG........a.....yve..vlfpsvevkla....alvfylvfvavnilGvkeaakle..lvvtlvaiiellvfigavaphfdsanlfkggqaaadsfkagafvGvfaaiPfaiWfflaveGvalaaeeaknPkrdipkgliaailtllalalgvlvvaaGaadakklansndPlpeal 266
                   +++ae+++ iP +g ++ ++  afG +  f  G  +++ + f+++    a a  +G        a     y+   vlfpsv + +      lv+ +v  +v + G+k + +++  + vt + i++l+v  +  +  +++++ +         f + ++ G+        + f+  + va  +ee+ +P +++p+g+++++l    +  gv +   G++    l+++  Pl++a+
  MMETSP1061-20121228|3844_1  86 TALAYAEFSSLIPASGSAYIYTYVAFGEVYAFCVGWNLILGYGFTASvaarAWADYVGdflvkitgAdwiipYCTevVLFPSVSPSYTcsplSLVIVIVSTIVLLRGAKDSSTFNnlICVTNLCILALIVVSALASGSIEATDNLL-------PFAPSGMPGILRGAGLVFYAFIGFDMVASLSEEVVHPEKNMPIGIVGSLLLSTLIYCGVTLAVVGMTPLPFLGET-TPLVNAI 313
                 4579**************************************88654111134434441111111123333355433578888776541111456666666666678888888862234566777777776666666665554433.......3788888888888888888899999999999******************98888888888888887777666654.5676664 PP

>> TIGR00912  2A0309: spore germination protein (amino acid permease)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.3      0.29   1.5e+02       2      64 ..      38     100 ..      37     151 .. 0.71
   2 !   20.1   2.3   1.5e-07   7.4e-05     117     233 ..     176     296 ..     162     300 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.29
   TIGR00912   2 kisskqiiliiasttigiGlltlpalvskeakqDgWislIigslivlfllllvlkimkkfpek 64 
                 ++++  +il  +++ +g+G+ +l+ + +k a++ + +s +  +l +++ +l +   +++ p  
  MMETSP1061-20121228|3844_1  38 TLNAVDLILYGLGSAVGAGIYILAGIGAKLAGPAISLSFLGCGLSCTLTALAYAEFSSLIPAS 100
                 578889999999999999999999999999999999999999999998888888777776654 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 1.5e-07
   TIGR00912 117 vliililivsiylvrkGievlarlaeilliivlil...ilillllalklkdisnLlPvlenglspvlkgvlvvtiafveiivflilfpylkn.ksklkkvvilaiilsvllyilitivsiv 233
                  l+++i+ivs  ++ +G+++ +  ++++ +  l +   i++ +l++ ++    nLlP+   g+  +l+g+ +v +af+++ ++  l + +    + ++  ++ +++ls+l+y  +t+++++
  MMETSP1061-20121228|3844_1 176 PLSLVIVIVSTIVLLRGAKDSSTFNNLICVTNLCIlalIVVSALASGSIEATDNLLPFAPSGMPGILRGAGLVFYAFIGFDMVASLSEEVVHpEKNMPIGIVGSLLLSTLIYCGVTLAVVG 296
                 6899**************99999998776543333353444555556677789****************************99999876655055556666668999*********99876 PP

>> TIGR00930  2a30: K-Cl cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   6.6   1.1e-06   0.00058     286     483 ..     245     447 ..     147     455 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.1e-06
   TIGR00930 286 vaifFPsvtGilAGanisgdLkDaqkaiPkGtllAilittvvYlssvvlvgacvvrdalgdlndklvsavtslac......fseceketckygllnnlvvmslvspf.pplivaGiflatlsaaLasLvsaprllqalakDnilpllqvFgkgkgkngEPlrallltaliallfiliaeLdliaPiisnFfLasYalvnlscfla 483
                  ++ F +  G    a  s ++  ++k +P G +  +l++t++Y ++++ v +      lg+ +  +    ++++c          ++++ +  l +     + + +f + +++ G  +  ++a  +sL++ pr++  +a D +   + +F++ + k +    ++l+t ++a  +     L+ +a +is   L+ +++v+  ++l 
  MMETSP1061-20121228|3844_1 245 AGLVFYAFIGFDMVASLSEEVVHPEKNMPIGIVGSLLLSTLIYCGVTLAVVGMTPLPFLGETTPLVNAILANACCthseqmEVVLASDPVEVCLRDCPAFENPALAFvSKVVSGGAGFGLMAACFTSLMGQPRIFYRMALDGLW--FPLFSRVNPKTQTMSEGILMTGFVAAWIACFVPLEALANLISLGTLMVFTFVDAGVILL 447
                 56778888888888999999***************************9999998888888877665554444444554443233455688888887655555444442579999999*************************96..67799999999999*************************************98777665 PP

>> TIGR01773  GABAperm: GABA permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6  13.6   3.6e-05     0.018      18     261 ..      43     299 ..      30     340 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.6e-05
   TIGR01773  18 hvtmlsiagvigaglfvgsgvaiaeagpaallayllagllvvlimrmlgemavaspdtgsfstyadkaigrwagftigwlywffwvlvialeaiaaaailqawfpdip..lwlfslvltlvl..tvtnllsvksygefefwlalikviaii..........afivlgavaivgflp.eaevsglsslla.kggflpegigavlsallvvlfsfmgteivtiaaaeskdpaksitratnsviwrisvfylvsifivvallp 261
                  + +  +   +gag+++ +g   + agpa+ l++l  gl   l     +e++   p +gs   y+  a g+   f +gw     + +  ++ a a a  +  ++ +i    w++     +vl  +v+  ++          ++    i ++           +i +    i+  +   a +sg  + ++    f p g+  +l +  +v+++f+g ++v+  + e  +p+k++       +   +++y +  + vv + p
  MMETSP1061-20121228|3844_1  43 DLILYGLGSAVGAGIYILAGIGAKLAGPAISLSFLGCGLSCTLTALAYAEFSSLIPASGSAYIYTYVAFGEVYAFCVGWNLILGYGFTASVAARAWADYVGDFLVKITgaDWIIPYCTEVVLfpSVSPSYTCSPLSLVIVIVST---IVLLrgakdsstfnNLICVTNLCILALIVvSALASGSIEATDnLLPFAPSGMPGILRGAGLVFYAFIGFDMVASLSEEVVHPEKNMPIGIVGSLLLSTLIYCGVTLAVVGMTP 299
                 55566677899********************************************************************99988888888888888888888887775225777666655551122333333322222222221...11111111111111334444444444433033344544445434579*************************************99877776666677777777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.57
# Mc/sec: 1242.52
//
Query:       MMETSP1061-20121228|3853_1  [L=1128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-19   65.8   0.0    5.8e-19   65.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    3.2e-07   27.9   0.0      7e-07   26.7   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   2.9e-22   5.8e-19       2     187 ..     255     432 ..     254     438 .. 0.89

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 2.9e-22
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadG..aLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkr 187
                 tg + a+k l  + +e +      r ei +  +L hPniv+L +  e+    ++ v e+  G  l ++L  +     + ae +rL+ q+L a+   h++G++hRDLk +n + s +  +s+ k++DFG++    + ++        ++  +G+P   aPe +Rg     + D++a G+i +  L G++
  MMETSP1061-20121228|3853_1 255 TGVEYAVKALDLKWVETKEGLEQLREEIFIMCQLDHPNIVRLEEVYESHS-EIYLVQELCLGGELFDRLDEQPdyHYTEAECARLIKQMLCAVRYLHSKGIIHRDLKLENFLFSSSAPDSELKMIDFGLSKHF-QYGE-------IQQQAVGTPYTVAPEVIRGRY-DERCDIWAIGVIAFLLLSGDP 432
                 888999999999999**************************999988887.89****************8765116788999**********************************************99754.3444.......345679*************75.6899********988888875 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   3.4e-10     7e-07      89     140 ..     332     387 ..     276     403 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 3.4e-10
   TIGR03724  89 eekelellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkksk 140
                 e++  +l+k++  +v  lH++gi+h Dl  +N++++    d++l +iDfGL+k+ +
  MMETSP1061-20121228|3853_1 332 EAECARLIKQMLCAVRYLHSKGIIHRDLKLENFLFSssapDSELKMIDFGLSKHFQ 387
                 343448899999999********************87778899*********9854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.14s 00:00:00.62 Elapsed: 00:00:00.52
# Mc/sec: 2863.15
//
Query:       MMETSP1061-20121228|3854_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       323  (0.0787421); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.20s 00:00:00.55 Elapsed: 00:00:00.43
# Mc/sec: 973.04
//
Query:       MMETSP1061-20121228|3857_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00029   17.7   0.0    0.00032   17.6   0.0    1.0  1  TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01016  sucCoAbeta: succinate-CoA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   7.7e-08   0.00032       1      38 [.       7      44 ..       7      49 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 7.7e-08
   TIGR01016  1 mklheyqakellakygipvpegavatsveeveeiaeel 38
                ++lhe+++ ell++ gi +p+g++a++++e+ee+ +++
  MMETSP1061-20121228|3857_1  7 LNLHEWSSMELLRENGIATPRGYLAKTPDEAEELFRKH 44
                58******************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.21
# Mc/sec: 389.68
//
Query:       MMETSP1061-20121228|3856_1  [L=844]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 3276.44
//
Query:       MMETSP1061-20121228|3858_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 565.67
//
Query:       MMETSP1061-20121228|3860_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1571.10
//
Query:       MMETSP1061-20121228|3865_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 479.96
//
Query:       MMETSP1061-20121228|3866_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 749.70
//
Query:       MMETSP1061-20121228|3864_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-05   21.3   0.0    6.8e-05   20.5   0.0    1.3  1  TIGR00671 baf: pantothenate kinase, type III


Domain annotation for each model (and alignments):
>> TIGR00671  baf: pantothenate kinase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   1.7e-08   6.8e-05     103     221 ..     164     299 ..     145     310 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.7e-08
   TIGR00671 103 rvvnalaAielygkavvVVdaGtAltidlvdeegkilGgaIapGlaislealkdr.aaalpkvelarpeevlgk.............dTveavqsGvvfgvlglieglvkrikkelk...rkaavvitGgagklls 221
                  +++ +aA++  +++v+  + G A+t+  +d+e ++lGg     + i + +l d  +   p v   + +++ +k             d   +v + +  +++g+++ +vk+  k ++     + v+i G +  + +
  MMETSP1061-20121228|3864_1 164 QIAAMYAAKKEHESPVLLMNGGHAITYIGMDKESNFLGGGACAAMPIRCRTLCDYcSSNFPSVDFLKYKQITEKakkdkkpislfstDMEVSVAANATAEMAGQLRNIVKQFLKLVGplaTPVTVIINGDDTGVVK 299
                 799************************************9999999999999986367899999999999999988999999999555567899999999999999999999999888888889999997665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.47
# Mc/sec: 1609.14
//
Query:       MMETSP1061-20121228|3862_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    3.9  16.7          4    3.4  11.6    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4  11.6   0.00099         4     279     448 ..      91     268 ..       6     323 .. 0.61

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.00099
   TIGR00934 279 kiseanslaaesdeessesrriqekikr.rlstssiekns.qqnltrlaktksfddska.vrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngn......kkdasksneseevsldsee..nayptyndeeedsrhalsktes 448
                 ki e n+++ ++d++ss+s  + ++     +s +++ k + +     + k++  dds + v   +++ti+  e+++   + +  d ++   ++ ++++r+kk+ k+++ +  + + s+ ++ s  +++++g       k   s+sn  ++  ++++e  +++p  nd++  ++ ++s++ s
  MMETSP1061-20121228|3862_1  91 KI-EENRTKIKNDSSSSSSSSVGKSEPTpPPSIKKRTKPTrRPTTPGTDKPSPVDDSISeVAPPQTETIEVKEEKEKPPIIN--DSNDKKSEQKSKNHRDKKSKKSSKDKATTTKPSPLPSISPAQTQSDGGtkskkpKATVSDSNAKNKKGSEDTEssVESPKNNDNNPAPKATKSTKDS 268
                 33.4455666666666666556544333033333333333244555666667777743303334445555555554433333..3333333334455555566666666666666666666666666666654444444455555555444444444332333333333344444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 3122.22
//
Query:       MMETSP1061-20121228|3868_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 449.96
//
Query:       MMETSP1061-20121228|3869_1  [L=794]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    9.1   3.3       0.57    7.9   2.3    1.5  1  TIGR00986 3a0801s05tom22: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR00986  3a0801s05tom22: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   2.3   0.00014      0.57      19      49 ..     635     665 ..     623     667 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00014
   TIGR00986  19 avveeeedaedqedvdeedssdsDfeddeee 49 
                  vve  e+   + d d++d+sdsDf+dd++e
  MMETSP1061-20121228|3869_1 635 RVVEYLEYYDGNVDSDSDDDSDSDFDDDDDE 665
                 5889999999999**************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.11s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 3082.33
//
Query:       MMETSP1061-20121228|3871_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1529.52
//
Query:       MMETSP1061-20121228|3867_1  [L=776]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          2    4.4  14.5        2.3    4.2  10.0    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  10.0   0.00057       2.3     317     445 ..     610     755 ..     374     775 .. 0.55

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.00057
   TIGR00934 317 s..........qqnltrlaktksfdd.....skavrlersktidraeasdleeldrakdfqkm.veknvkaakrkkknfkkreanlklfeksryakksdrneedngn.....kkdasksneseevsldsee..nayptyndeeedsrhalsk 445
                 +           ++ +rl+kt+   +     s +  l +sk +  +++s+++  ++++d+++     ++++a+r+++ +kk++++++++++s++  +++rn  +++      k  +s+ +  + +s       ++ +  ++  + s  ++ k
  MMETSP1061-20121228|3867_1 610 KssvsgstsvdTDEEQRLKKTRGLSGagensSTTESLANSKQTSVSSNSQIKAKKKSRDKDTRsRSPMMDDASRSSDPTKKKSRDKHSRSRSPMMDDASRNSAATKSsdaakK--KSRDRIARSRS----PmlDNASRNSNVTKSSDASKRK 755
                 01111111122122222222221111111224444444444444444444444444444433202334455555555555555555555555555554444444433222110..11111111111....1111111111111111111122 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.52
# Mc/sec: 1969.68
//
Query:       MMETSP1061-20121228|3872_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.063   11.1   2.2      0.083   10.7   1.5    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
        4.3    3.5  20.9        5.6    3.1  14.5    1.2  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.5   4.1e-05     0.083      52     207 ..      30     195 ..       9     204 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.1e-05
   TIGR03499  52 deeesasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselal....eeedperakllkklleagvseelarelleklke...............kedaeeareklreaLekklsvkkeedeilekggviaLvGpt 207
                          see++++++  +++++ + k++++++k+k+ ++++ ++ ++ +++l +a+ +l++ +++l+++ ++ l+  ++    +e+d   ++  +kl ++++ + +++++ +   +               ++d++e +e l + L++ ++  +  d++l++     LvG t
  MMETSP1061-20121228|3872_1  30 A--------SEEPPRSEKGANDSSSGNTKSNNNNKKNKNDNNNPWANPESIQEQLVAARGDLESAWNKLRSTTQTNLDDDDDndndNEQDDDDDDDDDKLSDEEFRALYIETMTDAFGDvlqqtmqsssssnnsNTDDDEHVELLVDCLQSGMDLLDP-DQLLSRSYFASLVGET 195
                 2........33333333333333333333333344444444444555556666667777999999999999999999987668999444555555555555555555555555444444332222222224555666666666666666666643333.3333333366666665 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1  14.5    0.0027       5.6      44     137 ..      31     124 ..      19     162 .. 0.55

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0027
   TIGR03490  44 enkPkkpkkpdnkeksensnnks.nseekdeeepkskkpekkpdpsknkeeiekpkkepkkpd..kkpqadepnndhadqknnnkvdfsdldklkke 137
                  ++P  ++k  n   s n++ ++ n ++k+++++   +pe+ +++      +   ++  +k     + + d+++++++d+ +++++d+ d dkl+ e
  MMETSP1061-20121228|3872_1  31 SEEPPRSEKGANDSSSGNTKSNNnNKKNKNDNNNPWANPESIQEQLVAARGDL--ESAWNKLRstTQTNLDDDDDNDNDN-EQDDDDDDDDDKLSDE 124
                 34566666666554444432222244444444444444554444433333222..2223333311444555553333333.3334444455777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.40
# Mc/sec: 739.14
//
Query:       MMETSP1061-20121228|3873_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1948.16
//
Query:       MMETSP1061-20121228|3874_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-28   95.6   3.0    3.8e-26   89.7   0.1    3.2  3  TIGR00475 selB: selenocysteine-specific translation elongation factor
    1.6e-17   61.2   1.0    1.4e-15   54.8   0.0    2.5  2  TIGR00485 EF-Tu: translation elongation factor Tu
    6.8e-17   58.8   0.0    1.2e-16   58.0   0.0    1.3  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
      2e-09   34.8   3.3    1.2e-07   29.0   2.3    2.8  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    1.9e-08   31.8   0.6    1.4e-07   29.0   0.1    2.1  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    6.6e-07   27.1   0.0    6.6e-06   23.8   0.0    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain
    9.2e-07   26.6   0.0      0.001   16.6   0.0    2.4  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    8.9e-05   19.5   0.0      0.015   12.2   0.0    2.6  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0021   14.2   0.0     0.0048   13.0   0.0    1.6  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA


Domain annotation for each model (and alignments):
>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.7   7.6e+02     497     531 ..     116     154 ..     100     170 .. 0.62
   2 ?    0.9   0.0     0.067        31       3      22 ..     248     267 ..     246     272 .. 0.90
   3 !   89.7   0.1   8.2e-29   3.8e-26      50     274 ..     333     584 ..     326     645 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.7
   TIGR00475 497 evatdEkvvlkilrkaakrgiltaivkdrllk....kli 531
                 e ++d ++v+k +r+  +  ++ ++++d ll     +l 
  MMETSP1061-20121228|3874_1 116 ENTADGIAVRKQIRNDHQGAVVVVVIEDSLLGdgrdQLY 154
                 345677888888888877777788888887765555444 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.067
   TIGR00475   3 iataGHvDHGKttLlkaltg 22 
                 +a+ G vD GK t++ +lt 
  MMETSP1061-20121228|3874_1 248 VAVVGNVDAGKSTMIGTLTS 267
                 899***************95 PP

  == domain 3    score: 89.7 bits;  conditional E-value: 8.2e-29
   TIGR00475  50 kvlgliDvPGHekflknalagv..ggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflkn....................akivkvsAktGqGieeLkkelknLlesldak.dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDe..lvlepink..kvr..vkalqaqnqsvekavAGqR..ialnladvdkeklkRGllilkpeepkkrvvvklkae 274
                 +v++l+D  GHek+lk+ + gv  g +d+al++v++   +   t+ HL +  ++gi+ +i++ tK+D   e   k   +e+ ++l+   + k+                    a ++ +s +tG Gi+ L+k l  L+ + + + + ++++ + +D +F+v G+G vv G +  G+ +vg +  +++ p++    ++   k+ +  + ++ + + Gq   +al+l+   ++kl+RG+++lk  +  +r   ++ ae
  MMETSP1061-20121228|3874_1 333 RVITLMDLAGHEKYLKTTIHGVasGMADYALILVNSRHPPTHMTHHHLNLCVSFGIH-VIIIFTKVDGCPEHAFKTSKSEVCKLLRRPDIGKQpfeirteediaicmgkmgslAPMISTSCVTGDGIDLLQKMLFSLPKRRKHErKLNRSFEYLVDDIFNVPGVGSVVSGFVNAGQLDVGPNahVYVGPTDDgtFMKtvAKSAHIARINTTRVTSGQSacLALALNKEMRKKLRRGMVVLKESPSATR---EFEAE 584
                 89*****************99833569******************************.999*********999999999998887754332211111111122222222222256799********************987766599*****************************99986533899998752233321577788899999999**973356666677799*****777766655554...34444 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.1    0.0057       2.6      13      46 ..     246     279 ..     240     314 .. 0.77
   2 !   54.8   0.0   3.1e-18   1.4e-15      76     388 ..     334     680 ..     321     686 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0057
   TIGR00485  13 vnvgtighvdhgkttltaaittvlakegkaaakk 46 
                 + v  +g vd gk+t+  ++t  l ++g+++ ++
  MMETSP1061-20121228|3874_1 246 LRVAVVGNVDAGKSTMIGTLTSSLLDDGRGSSRT 279
                 56899*******************9999987664 PP

  == domain 2    score: 54.8 bits;  conditional E-value: 3.1e-18
   TIGR00485  76 hyahvdcpghadyvknmitgaaq..mdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseyd.....fp...gddvpivrgs..alkalegdaeweekilelmeavdeyipt...perevdkpfllaiedvfsitgrgtvvtgrvergevkvgeevei.vglk...etkkttvtgvemfkklldeakagdnvgvl..lrgvkkeeiergqvlakpgsikphkkfeaevyvlkkeeggrhtpffsgyrpqfylrttdvtgkielpeg................vemvl.pgdnvkltveli.spvaleeglrfaireggrtvgagv 388
                   + +d  gh  y+k  i g a    d a+++v +   p   t+ h+ l+   g+  +++f  kvd   ++   +  + ev +ll + d     f+    +d+ i  g   +l  + + +  +   ++l++++   +p+    er+++++f   ++d+f + g g+vv+g v+ g++ vg + ++ vg     +  kt+     + +    + ++g+ + +   l    +++++rg+v+ k  s  + ++feae+ vlk  eg      +++y   + +r +  + kie+++                  e+vl pg + k+ +e+   p  +  g+r+  r+ gr  g g 
  MMETSP1061-20121228|3874_1 334 VITLMDLAGHEKYLKTTIHGVASgmADYALILVNSRHPPTHMTHHHLNLCVSFGIHVIIIF-TKVDGCPEHA-FKTSKSEVCKLLRRPDigkqpFEirtEEDIAICMGKmgSLAPMISTSCVTGDGIDLLQKMLFSLPKrrkHERKLNRSFEYLVDDIFNVPGVGSVVSGFVNAGQLDVGPNAHVyVGPTddgTFMKTVAKSAHIARINTTRVTSGQSACLAlaLNKEMRKKLRRGMVVLKE-SPSATREFEAEICVLK-GEGTTIRRSYQAYVHILNVRQSAYAKKIEIINHnalglpsthtalygeeNEIVLrPGCRAKVRFEFArRPEYVRPGMRMLFRD-GRVRGVGL 680
                 4566899*************88542599***************************998888.6899887665.566788999998765511111432225789999875224666666666666667777777777775222689***********************************998875787744345788899999999999999999987765115667799********996.5567899*******95.67888888899999999999999999999988745555555555555554555445666666666542355555666665555.35555555 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   2.7e-19   1.2e-16       7     345 ..     245     606 ..     241     661 .. 0.72

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 2.7e-19
   TIGR00483   7 hlnvafighvdsgkstlvgrl...lyeagaider.lleklkkeaeekgkasfefayvldklkeere.rgv.tidvahkkfe....tdkye.vtivdapghrdfiknmitgas..qadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkk..vgykpdev...efipvsayk.gdnvvkksenapwykgktlle....aldkleapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgek..vvfepagvsgevksie..mhheqie..qaepgdn..igfnvrgvskkdirrgdvagdadnppkvakeftaqivvlqhp.gaitvgytpvldah 345
                  l va++g vd+gkst++g l   l++ g  + r  + k ++e  e g++s   ++++   +  +   g  ++  +++k e     + y+ +t++d  gh  ++k  i g +   ad a+++v++ +     +  t+ h+ l+ ++gi+ +i+   k+d     e+ f+  k ev++ll+   +g +p e+   e i ++  k g      s+     +g  ll+    +l k ++ e+  ++ +   ++d++++ gvg+v  g v++g l +g +  v   p+   + +k++    h  +i+  + + g+   + + ++   +k++rrg v+  +++ p +++ef+a+i vl+   ++i   y   ++  
  MMETSP1061-20121228|3874_1 245 NLRVAVVGNVDAGKSTMIGTLtssLLDDGRGSSRtSIMKHRHE-IESGRTSTASTHLMGFRSTGQAiAGKdSVRASRRKSEdeiaRESYRvITLMDLAGHEKYLKTTIHGVAsgMADYALILVNSRHP---PTHMTHHHLNLCVSFGIHVIII-FTKVDGC--PEHAFKTSKSEVCKLLRRpdIGKQPFEIrteEDIAICMGKmGSLAPMISTSCVTGDGIDLLQkmlfSLPKRRKHERKLNRSFEYLVDDIFNVPGVGSVVSGFVNAGQLDVGPNahVYVGPTDDGTFMKTVAksAHIARINttRVTSGQSacLALALNKEMRKKLRRGMVV--LKESPSATREFEAEICVLKGEgTTIRRSYQAYVHIL 606
                 688****************985556677766655156666666.5788999999999875554433134314555566655111145676369****************9752258888888888777...67789************87665.7899976..6999************9545999998883223455554331433334455555556666554211167788899999*******************************999642277889887777777642245566651145677762256677888999******98..6789**************965167888888877764 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   2.3   2.5e-10   1.2e-07       1     332 [.     246     604 ..     246     631 .. 0.66

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 2.5e-10
   TIGR02034   1 lrfltcGsvddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgiti...d.v.ayryfstdk......rkfivadtPGheqytrnmatgast..adlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdylalaek..l.....gvsdvtviPlsa.lkGdnvveksesmpWyeGptllevletveveesaeeeelrlpvqyvnrpnldfrG....yaGtiasGsvkvGd..evvvlpsgres......rvarivtfdgelekaeaGeavtlvledei..disrGdllaaadeapevadqfaaelvwladeallpGksyklklg 332
                 lr+  +G+vd Gkst+iG l   t ++l+d   + ++   k+ +e e+   +     l   r  g +i   d v a r  s d       r   + d  Ghe+y + ++ g+++  ad a++lv++r+  ++ t+ h  ++  +Gi+ v++   k+d  +  e+ f++ k++  +l ++  +     ++++ + i +   + G      s+s    +G  ll+ +     +++++e++l    +y+  +  +  G     +G +++G+++vG   +v+v p +  +      + a+i  ++  + ++    +++l l++e+   + rG ++    e+p+++++f+ae+  l+ e  +  +sy+  + 
  MMETSP1061-20121228|3874_1 246 LRVAVVGNVDAGKSTMIGTL---TSSLLDDGRGSSRTSIMKHRHEIESGRTSTASTHLMGFRSTGQAIagkDsVrASRRKSEDEiaresyRVITLMDLAGHEKYLKTTIHGVASgmADYALILVNSRHPPTHMTHHHLNLCVSFGIH-VIIIFTKVD--GCPEHAFKTSKSEVCKLLRRpdIgkqpfEIRTEEDIAICMgKMGSLAPMISTSCVTGDGIDLLQKMLFSLPKRRKHERKLNRSFEYLVDDIFNVPGvgsvVSGFVNAGQLDVGPnaHVYVGPTDDGTfmktvaKSAHIARINTTRVTSGQSACLALALNKEMrkKLRRGMVVL--KESPSATREFEAEICVLKGEGTTIRRSYQAYVH 604
                 788999************99...6778888887777766666666555555555555555554443331123223555554442222222666789***********9999754348*****************************5.667789999..5678889988888887754311311111344444566654144555557788888889999998877666677788888888889988888888773333589999***9999622577777654441110003444555555554444445566777888732466665444..45699************9999888888875443 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1     3e-10   1.4e-07       5     149 ..     245     401 ..     241     421 .. 0.67
   2 ?    0.5   0.0      0.13        58     165     249 ..     438     516 ..     427     547 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 3e-10
   TIGR03680   5 evniglvGhvDhGkttlvkaltGvwtd...........thseelkrgisiklGyadaeikkc.eeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaa..lmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvs 149
                 ++ +++vG vD Gk+t++ +lt   +d           +h  e+  g +       + +++  + +  ++ +  ++  +e +   e  r ++++D  Ghe  + t + G a  + d al+ ++ + + P   t+ hl      gi+ ++i+  k+d   
  MMETSP1061-20121228|3874_1 245 NLRVAVVGNVDAGKSTMIGTLTSSLLDdgrgssrtsimKHRHEIESGRTSTASTHLMGFRSTgQAIAGKDSVRASRRKSEDEIARESYRVITLMDLAGHEKYLKTTIHGVAsgMADYALILVN-SRHPPTHMTHHHLNLCVSFGIH-VIIIFTKVDGCP 401
                 67899***********999999765441111111111166666666665555555555555524444455554444444447778899*******************9965436677777666.5566899******999999996.666678888655 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.13
   TIGR03680 165 kgtvaenapiiPvsalkkvnidvllealekeiptp...erdldkdalllvarsfdvnkPGteieklkGGviGGslvqGklkvgdeiei 249
                  g++   ap+i  s      id+l ++l + +p++   er+l++++  lv   f+v  PG      +G v+ G +  G+l vg + ++
  MMETSP1061-20121228|3874_1 438 MGKMGSLAPMISTSCVTGDGIDLLQKMLFS-LPKRrkhERKLNRSFEYLVDDIFNV--PG------VGSVVSGFVNAGQLDVGPNAHV 516
                 567777899999999999999998888877.5554111344455555666666654..66......5888888888888888876655 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.5e-08   6.6e-06       4     152 ..     246     429 ..     243     442 .. 0.77
   2 ?   -1.2   0.0       0.7   3.2e+02     142     162 ..     445     465 ..     437     467 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.5e-08
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt.......................................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetg 152
                  ++++vG vd+GKst++  l+      + +++  t  +  + + e G t                                         ++l+D+aG+e++    +  +  v++   ++d +++++  + +++  t    + + + g+ +i+ ++K+D     ++kt+  ++ + l   +i +++ e +
  MMETSP1061-20121228|3874_1 246 LRVAVVGNVDAGKSTMIGTLTSSL-LDDGRGSSRTSIMKHRHEIESGRTstasthlmgfrstgqaiagkdsvrasrrksedeiaresyRVITLMDLAGHEKY---LKTTIHGVAS--GMADYALILVNSRHPPTHMTHHHLNLCVSFGIHVIIIFTKVDGCPehAFKTSKSEVCKLLRRPDIGKQPFEIR 429
                 689***********9777776665.444443333333333334455666788889999999999***********************88899**********...4444444444..56677777778899999*************************8777899999988888888777766666555 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.7
   TIGR00231 142 epiielsaetgknidklfklv 162
                 +p+i +s+ tg++id l+k++
  MMETSP1061-20121228|3874_1 445 APMISTSCVTGDGIDLLQKML 465
                 4799***********999987 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0017      0.76      16      40 ..     243     267 ..     235     271 .. 0.86
   2 !   16.6   0.0   2.3e-06     0.001     105     160 ..     363     418 ..     354     435 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0017
   TIGR03598  16 dklpeiafaGrSNvGKSsliNaLtn 40 
                  ++  +a++G   +GKS++i +Lt+
  MMETSP1061-20121228|3874_1 243 ARNLRVAVVGNVDAGKSTMIGTLTS 267
                 56788******************97 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2.3e-06
   TIGR03598 105 vllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkkelkk 160
                 ++lv +rh+++++ ++ l+l+ + +i+v++++tK+D + +++ k+++++v k l+ 
  MMETSP1061-20121228|3874_1 363 LILVNSRHPPTHMTHHHLNLCVSFGIHVIIIFTKVDGCPEHAFKTSKSEVCKLLRR 418
                 689******************************************99999887765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.2e-05     0.015     166     197 ..     236     267 ..     100     287 .. 0.83
   2 !    4.6   0.0    0.0062       2.8     257     315 ..     358     415 ..     342     487 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.2e-05
   TIGR03594 166 eeeeeeeeepikiaiiGrpNvGKStLvNallg 197
                 +  e+ +++++++a++G   +GKSt++ +l+ 
  MMETSP1061-20121228|3874_1 236 SVGETLSARNLRVAVVGNVDAGKSTMIGTLTS 267
                 2222233558*****************99875 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0062
   TIGR03594 257 radvvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleek 315
                  ad +l++++++++ ++   + ++l+++ g  ++i++ K+D +  e+ +++ k+e+ + 
  MMETSP1061-20121228|3874_1 358 MADYALILVNSRHPPTHMTHHHLNLCVSFGIHVIIIFTKVDGC-PEHAFKTSKSEVCKL 415
                 6889999999********************************9.888888777776554 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     1e-05    0.0048       4     235 ..     248     516 ..     243     560 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1e-05
   TIGR01394   4 iaiiahvDhGkttlvDklLkqsgvlre.keeveervmDs.ndlererGitilakntavkykd.........................tkinivDtPGhaDfGGe.vervl.smvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDr.pdarpeevvdevfdLfvelgad....deqldfpvvyasakeGvasle..eedesedleplfdailehvpaP...kadkdeplqllvttldydeylGriaigrverGkvkkgqqval 235
                 +a++  vD Gk t++ +l   s  l++ + + +  +m    ++e  r  t  +     +  +                           i ++D  Gh  +    +  v  +m d +l+lv++   p   t+  l+ ++++g+++i++  k+D  p+   ++  +ev  L+   +      + + +  +    +k G       ++  + d  +l++ +l  +p+    + + + +++ lv  + +   +G ++ g v++G++  g + ++
  MMETSP1061-20121228|3874_1 248 VAVVGNVDAGKSTMIGTLT-SS-LLDDgRGSSRTSIMKHrHEIESGRTSTASTHLMGFRSTGqaiagkdsvrasrrksedeiaresyRVITLMDLAGHEKYLKTtIHGVAsGMADYALILVNSRHPPTHMTHHHLNLCVSFGIHVIIIFTKVDGcPEHAFKTSKSEVCKLLRRPDIGkqpfEIRTEEDIAICMGKMGSLAPMisTSCVTGDGIDLLQKMLFSLPKRrkhERKLNRSFEYLVDDIFNVPGVGSVVSGFVNAGQLDVGPNAHV 516
                 8999*********998864.34.44442556666666541455555555555444444444467777779999999999999999988899*******99865515555437*****************************************6367778888899999987655541122222333344555555544333222223334445555555555544111344566677777777777777777777777777766655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.49u 0.17s 00:00:00.66 Elapsed: 00:00:00.51
# Mc/sec: 1788.32
//
Query:       MMETSP1061-20121228|3877_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1363.89
//
Query:       MMETSP1061-20121228|3878_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.28
# Mc/sec: 372.40
//
Query:       MMETSP1061-20121228|3875_1  [L=759]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.49
# Mc/sec: 2044.48
//
Query:       MMETSP1061-20121228|3876_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 843.58
//
Query:       MMETSP1061-20121228|3879_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1061-20121228|3885_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-10   37.4   5.8      0.003   15.2   0.3    3.8  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     2e-06    0.0081       1      20 [.       4      22 ..       4      22 .. 0.96
   2 !   15.2   0.3   7.2e-07     0.003      12      24 ..      39      51 ..      29      52 .. 0.83
   3 !    9.4   0.1   4.6e-05      0.19      14      26 .]      65      77 ..      64      77 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2e-06
   TIGR02167  1 MFsgCssLtsLDlSnfdTsn 20
                MF++  s+++ ++ n++T++
  MMETSP1061-20121228|3885_1  4 MFQDAASFNQ-PIGNWNTAS 22
                **********.*******86 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 7.2e-07
   TIGR02167 12 DlSnfdTsnVTnM 24
                +lS++d+s VTnM
  MMETSP1061-20121228|3885_1 39 PLSGWDVSGVTNM 51
                89*********** PP

  == domain 3    score: 9.4 bits;  conditional E-value: 4.6e-05
   TIGR02167 14 SnfdTsnVTnMss 26
                + ++++nV+ M++
  MMETSP1061-20121228|3885_1 65 DAWNVGNVNSMKG 77
                67*********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 539.96
//
Query:       MMETSP1061-20121228|3883_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-12   45.0   0.0    1.5e-12   45.0   0.0    1.1  1  TIGR01123 ilvE_II: branched-chain amino acid aminotransferase


Domain annotation for each model (and alignments):
>> TIGR01123  ilvE_II: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   0.0   3.6e-16   1.5e-12      90     131 ..       3      44 ..       1      64 [. 0.90

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 3.6e-16
   TIGR01123  90 seasLYlRPfliatednlGvkaakeylflvlasPvGaYfkgg 131
                 s+ +LYlRP+l++t++ lGv +++e +f+v +sPvG+Yf + 
  MMETSP1061-20121228|3883_1   3 SKGALYLRPLLLGTGPRLGVGPSPESTFCVYCSPVGNYFSSS 44 
                 5789***********************************864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 301.69
//
Query:       MMETSP1061-20121228|3891_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 534.90
//
Query:       MMETSP1061-20121228|3888_1  [L=1148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-11   42.6   9.6    2.1e-11   41.7   6.7    1.4  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   6.7   5.2e-15   2.1e-11      71     296 ..     112     362 ..      68     368 .. 0.83

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 5.2e-15
   TIGR00817  71 vaivhtighvtsnvslskvavSfthtikalepi....fsvvlskfflgre..fpltlylsLlpivlGva......lasltelsfnllgflsamisniefvarnifsKkiltkk................sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvka 296
                 ++ +h++g v +n  +++ + S++ +ik +epi    ++++++ ++l+ +  ++++  +s++ iv G a      + s+     nl ++ +a+ s  +  +rn+f K                       +    l+ +isi++     p ++++ +++   ++  q  s ++   + +++   a ++  ly+  +  +l ++s+  +s  Nv KR+v +  + ++f++ i f    G+++a +G  lYs  ++
  MMETSP1061-20121228|3888_1 112 LGALHFLGGVCTNLGFALGSASVVQVIKLMEPIetliLTALANVLILKVShgLTVMKTISVVTIVSGTAmllsqkRESDLGHQVNLGSVFFALCSGFAMASRNVFMKTSSPAAtpsrsvtdnassrgwrQVAVNGLFNYISITSAA-AVPGTLFLILVE--SQGSSQRDSAITAWMFKSQVGKEAIVFHGLYNIASISVLCLISTQSHSLLNVGKRIVNVLYAGIVFRESIGFDGIRGLCIAGMGGILYSSGRN 362
                 4578****************************83322444444556664411566667799******999999999999999*************************9877667899******99999988888899999987765.567777776665..445677778999999888777777755559***************************99999**************************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.63
# Mc/sec: 2405.13
//
Query:       MMETSP1061-20121228|3886_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1761.77
//
Query:       MMETSP1061-20121228|3890_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.35
# Mc/sec: 810.79
//
Query:       MMETSP1061-20121228|3894_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-35  118.9   0.1    4.8e-14   49.7   0.3    3.6  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.8e-28   97.1   0.2    6.9e-11   39.8   0.0    4.2  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.4e-22   76.8   1.7    1.6e-06   25.4   0.1    4.2  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.6e-21   74.0   0.0    2.7e-08   31.5   0.0    3.4  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.7e-20   70.8   0.1      3e-05   21.6   0.0    4.3  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    4.9e-20   70.0   0.0    9.4e-08   29.8   0.0    4.0  4  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.3e-18   64.7   0.2    3.7e-10   36.9   0.0    3.9  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    5.9e-18   62.9   0.2      8e-08   29.5   0.0    4.0  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
      7e-18   62.8   0.2    6.5e-06   23.5   0.0    4.4  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      8e-18   62.5   0.2    4.3e-05   20.8   0.0    3.6  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.1e-17   61.4   0.1    5.5e-07   26.1   0.0    4.1  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.5e-17   61.6   0.0    1.4e-05   22.5   0.0    4.2  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    4.7e-17   60.3   0.0    1.8e-05   22.4   0.0    4.2  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.6e-16   58.3   1.1    0.00012   19.4   0.0    4.2  4  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    4.8e-16   56.7   0.0    0.00022   18.6   0.0    4.1  4  TIGR01978 sufC: FeS assembly ATPase SufC
    1.6e-15   55.2   0.1    0.00025   18.7   0.0    4.4  4  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.3e-14   52.2   0.0    4.4e-05   20.9   0.0    3.7  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.3e-14   52.0   0.0    1.1e-05   22.9   0.0    4.1  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.4e-14   52.0   0.0    0.00069   17.0   0.0    4.2  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.9e-14   50.9   0.0    0.00052   17.4   0.0    4.2  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.1e-14   50.1   2.7     0.0011   16.0   0.0    4.2  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    6.9e-14   49.7   0.0     0.0097   13.3   0.0    4.4  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.9e-13   48.2   1.8    0.00042   17.6   0.0    3.7  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.8e-13   47.7   0.0     0.0023   15.2   0.0    4.1  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.3e-13   47.5   0.0    0.00019   18.9   0.0    3.4  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.6e-12   43.4   0.0     0.0002   17.9   0.0    3.6  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    5.7e-12   42.5   0.0    0.00037   16.7   0.0    4.0  4  TIGR00958 3a01208: antigen peptide transporter 2
    6.2e-12   42.3   3.3    7.5e-07   25.5   0.1    4.0  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    7.6e-12   43.1   0.8     0.0047   14.4   0.1    4.2  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      1e-11   42.9   2.4    1.8e-06   25.6   0.1    3.9  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.2e-10   38.2   1.0     0.0022   14.3   0.0    3.5  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.8e-10   37.8   0.0    0.00016   18.1   0.0    4.0  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.9e-10   38.5   0.2      0.038   11.3   0.0    4.2  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.8e-10   36.5   0.5    4.5e-05   19.7   0.0    3.2  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.2e-09   35.0   0.1     0.0024   14.3   0.0    3.7  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    3.1e-09   34.1   1.8    0.00058   16.8   0.0    3.9  4  TIGR01288 nodI: nodulation ABC transporter NodI
    3.2e-09   33.8   0.0     0.0073   12.8   0.0    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    5.7e-09   32.9   2.5    5.1e-05   19.9   0.0    3.2  3  TIGR00955 3a01204: pigment precursor permease
      7e-09   33.4   0.4      0.017   12.6   0.0    4.1  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.2e-07   28.6   0.0      0.001   15.6   0.0    2.3  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.3e-07   28.8   0.1      0.087    9.7   0.0    4.1  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.6e-07   28.5   1.1       0.13    9.0   0.0    3.5  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.2e-06   25.2   0.0      0.037   10.3   0.0    3.6  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.5e-06   24.5   3.6    0.00011   18.3   0.1    3.4  4  TIGR00630 uvra: excinuclease ABC subunit A
    1.8e-06   24.6   0.1     0.0073   12.6   0.0    3.3  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    5.1e-06   23.8   0.0       0.18    8.8   0.0    3.3  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    8.4e-06   22.8   0.9     0.0079   13.1   0.0    3.1  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.1e-05   22.6   0.0      0.016   12.3   0.0    3.9  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    0.00014   19.3   0.2       0.21    8.9   0.0    3.9  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    0.00016   18.6   0.2        0.4    7.4   0.0    3.2  3  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
     0.0002   16.8   0.0       0.41    5.8   0.1    3.3  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    0.00051   17.0   0.3       0.21    8.4   0.0    3.1  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
     0.0056   13.1   0.0      0.053    9.9   0.0    2.5  4  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
  ------ inclusion threshold ------
       0.01   10.4   0.1        0.1    7.1   0.0    2.0  2  TIGR01257 rim_protein: rim ABC transporter
      0.016   11.5   2.8        0.3    7.2   0.0    2.7  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      0.019   10.3   0.0          5    2.3   0.0    3.2  3  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.2e-05    0.0031     333     372 ..     110     149 ..     101     154 .. 0.80
   2 !   49.7   0.3   6.6e-16   4.8e-14     104     335 ..     224     474 ..     201     482 .. 0.68
   3 !   48.0   0.0   2.2e-15   1.6e-13     154     223 ..     640     709 ..     617     717 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.2e-05
   TIGR03719 333 gdklliddlsfklpkggivGviGpnGaGkstlfklitgke 372
                  +  l++d ++kl ++ +  ++G nG+Gkstl+k i  ++
  MMETSP1061-20121228|3894_1 110 PEASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKIYAQK 149
                 4567889999999999999999999999999999888776 PP

  == domain 2    score: 49.7 bits;  conditional E-value: 6.6e-16
   TIGR03719 104 eeisaklaeedadfdklleeqaklqekidaadawdldskleiamdalrlpeeda.kveklsGGekrrvalcrlll....ekPdlllldePtnhldaesvaWlekflkey...kGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekr...leqeekeeaarkkalkkeleWvrsspka.rq..akskar..laryeelaseesekke.etaeivippgerlGdkv...ievenlskafgdk 335
                 +e  ++  +   ++++l+ee ++l+++++ +da   +++ ++ ++ l + + d+    +ls  +++ + lc   +    ++  lllldePtn ld   +  l +++ +    + tvv+v hd  ++++va  i+++   +   y gny s+   ke++   + +++ + ++++ +l   l+ +++++ + r+  +k+ka+   ++ ++++++e++kk+ e+++   +p er G +v   +++ +++k+  dk
  MMETSP1061-20121228|3894_1 224 NENDNEEDDVATKMERLCEELSSLEDALHFEDALLGQHQNDL-LHELGISDPDTrPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSlapSATVVIVSHDVDLINDVATDIVDMCAKKLWYYPGNYDSYSLTKEQKesfVLKQSLTMERKAGRLYGTLQHLKEASVSkRKagSKKKAKtiASHRKKIERHEHSKKTfESQTAADAPVERRGLSVaqrLKLAEITKTVPDK 474
                 333333334467899999999999999999999877777665.566777766652799*************987533337889**********************987533368***********************************9975555551114444444444445555556555544322022112334431034445666666666551444455567788887772224456666666655 PP

  == domain 3    score: 48.0 bits;  conditional E-value: 2.2e-15
   TIGR03719 154 eedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldn 223
                 ++ + ++ lsGGe  r+ l+ + +e+P +l l+ Pt hld esv  l + l+e++Gt+++v  d  fl  
  MMETSP1061-20121228|3894_1 640 QAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNGTLILVCQDASFLRS 709
                 3455678899999999999999999999999999999999999999999999999999999999999865 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.4e-06    0.0001       4      38 ..     111     145 ..     108     152 .. 0.89
   2 !   39.8   0.0   9.4e-13   6.9e-11     100     190 .]     254     348 ..     236     348 .. 0.84
   3 !   12.0   0.0    0.0003     0.022       7      50 ..     534     576 ..     529     584 .. 0.89
   4 !   20.3   0.0   8.8e-07   6.5e-05     112     185 ..     630     702 ..     619     707 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.4e-06
   TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhl 38 
                 ea+ l++  l++ r +v +l+G+nG+Gkstll+++
  MMETSP1061-20121228|3894_1 111 EASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 56689999************************986 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 9.4e-13
   TIGR01166 100 seaeverrvrealaavdisgleerpthllsgGekkrvaiaga.va...lrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdla 190
                 ++a + +  ++ l+ ++is+ + rp+  ls  ++k + + +a +     +  +llldePt gld +G  +l++++    +   tvvi +hdvdl+
  MMETSP1061-20121228|3894_1 254 EDALLGQHQNDLLHELGISDPDTRPCGELSLLQRKEILLCAAcIGcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLI 348
                 5556667778999**********************9865444144222567899***************************************96 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.0003
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvl 50 
                 v++ ++l +++g +++llG+ G+  s l++ l+  l P++G++ 
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 7889****************887.589**************996 PP

  == domain 4    score: 20.3 bits;  conditional E-value: 8.8e-07
   TIGR01166 112 laavdis..gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                 laa ++s    ++ +  +lsgGe  r+ +a++   +p vl l+ Pt+ ld + ++ l+   ++lre   t+++   
  MMETSP1061-20121228|3894_1 630 LAAFGLSpaSQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALA---HGLREWNGTLILVCQ 702
                 55555541134567789***************999***************98877666...555555555555555 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0    0.0011     0.078      13      47 ..     111     145 ..     101     152 .. 0.82
   2 !   25.4   0.1   2.2e-08   1.6e-06     157     208 ..     305     356 ..     266     363 .. 0.92
   3 !   12.0   0.0   0.00027      0.02      15      60 ..     533     577 ..     524     585 .. 0.88
   4 !   25.1   0.0   2.8e-08     2e-06     128     189 ..     638     696 ..     616     726 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0011
   TIGR03873  13 grlivddvdvtaPaGaltgllGPnGsGkstllrll 47 
                 +  +++d +++     +  l+G nG+Gkstll+ +
  MMETSP1061-20121228|3894_1 111 EASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 566788888888999999**************976 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 2.2e-08
   TIGR03873 157 klllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvv 208
                 +lllldePtn ldv+  + l +++ +  a+ +tvv+  hd++l   v+ ++v
  MMETSP1061-20121228|3894_1 305 SLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDVATDIV 356
                 79*****************************************999988877 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00027
   TIGR03873  15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdl 60 
                  + d vd+   +G  t llGP Gs  s l+++la  lap++G+++ 
  MMETSP1061-20121228|3894_1 533 FVFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIHH 577
                 57899****************998.599***************964 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 2.8e-08
   TIGR03873 128 ssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvt 189
                 +s a+ +l  lsGGe  r  la     +P +l l+ Pt hldv++  +l   +re    + t
  MMETSP1061-20121228|3894_1 638 ASQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREW---NGT 696
                 456888999**********************************9988888888887...333 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0035      0.26      14      45 ..     113     144 ..     107     151 .. 0.83
   2 !   29.5   0.0   1.5e-09   1.1e-07      63     186 ..     219     344 ..     210     355 .. 0.84
   3 !   31.5   0.0   3.7e-10   2.7e-08      14     173 ..     533     693 ..     523     712 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0035
   TIGR01189  14 vlleglsfelaaGealvveGpnGiGKttLLRi 45 
                  lle+ +++l    +  ++G+nG GK+tLL+ 
  MMETSP1061-20121228|3894_1 113 SLLEDATLKLLRNRVYCLVGRNGCGKSTLLKK 144
                 567777788888888899************85 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 1.5e-09
   TIGR01189  63 elaeqrdelaeellylgHldglKaeLsalEn.LkfyaallqseqktveealekvgLsgledlpvaqLsAGqkrRlalarLll....skaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                 + +e++++ +ee   ++  + l +eLs lE+ L+f  all+++q   ++ l+++g+s+ + +p+ +Ls  q++ + l    +    ++  l +LDEPt  lD++g  +l +++ + la   +v++ +h 
  MMETSP1061-20121228|3894_1 219 NNNENNENDNEEDDVATKMERLCEELSSLEDaLHFEDALLGQHQ---NDLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHD 344
                 445555556666777788899999**999864999999999888...99*************************99987665222267799********************************999995 PP

  == domain 3    score: 31.5 bits;  conditional E-value: 3.7e-10
   TIGR01189  14 vlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqk.tveealekvgLsgled..lpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaH 173
                  ++  +++ +  G    + Gp G+  + L++ila  l p++G+++  +  +        + ++ l   +g  a+   +  L+++++   ++++ ++   l++ gLs +++  +++a Ls G   Rl la + +++ p+  L+ Pt  lD+e+v+ la+ l++ 
  MMETSP1061-20121228|3894_1 533 FVFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIHHCSGLTIGCC-DGGDPTANLEDPNGFLADHPSATALEYLSDRYPNTTEtDLRSHLAAFGLSPASQakTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREW 693
                 688889999999999999999887.578****************99866655555.45589999*******999999999***998877555549**********977651167889****************************************999875 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.5e-06   0.00055      14      54 ..     111     151 ..     105     154 .. 0.91
   2 !   21.6   0.0   4.1e-07     3e-05     117     210 ..     261     358 ..     251     362 .. 0.85
   3 ?    5.7   0.0     0.031       2.3      19      60 ..     536     576 ..     523     583 .. 0.86
   4 !   20.3   0.0   1.1e-06   7.9e-05     113     204 ..     621     711 ..     608     721 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 7.5e-06
   TIGR02673  14 gveaLkdvslkiekgeflfltGasGaGkttllklllgaekp 54 
                 +++ L+d +lk+ +  ++ l+G+ G Gk+tllk +++++ p
  MMETSP1061-20121228|3894_1 111 EASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKIYAQKIP 151
                 56789*******************************99876 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 4.1e-07
   TIGR02673 117 rveevlelvgledkakalpeelsgGeqqRvaiaRaiv....nkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlel 210
                 + +++l+ +g++d  +    els   ++ + +  a +    ++ +lll DePt  lD +   r+ +++ +  +  +tv++++hd +l++ v++ ++ +
  MMETSP1061-20121228|3894_1 261 HQNDLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDVATDIVDM 358
                 556788899999999999999999999989888888733334779*********************************************99998877 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.031
   TIGR02673  19 kdvslkiekgeflfltGasGaGkttllklllgaekpsrGeve 60 
                 + v+l i++g  + l G+ G+  + l+k+l +++ p++G+++
  MMETSP1061-20121228|3894_1 536 DCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 5689999999999999*9887.699**************996 PP

  == domain 4    score: 20.3 bits;  conditional E-value: 1.1e-06
   TIGR02673 113 eiqkrveevlelvgled..kakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervk 204
                 ++++  ++ l + gl+   +ak+    lsgGe  R  +a   +++P++l  + Pt  lD e  + + + l+e n    t+i+++ d +++++ +
  MMETSP1061-20121228|3894_1 621 TTETDLRSHLAAFGLSPasQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWN---GTLILVCQDASFLRSLE 711
                 556667778888888751156667789********************************987776666666554...57788888888877664 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     9e-07   6.6e-05      12      46 ..     111     145 ..     104     150 .. 0.89
   2 !   29.8   0.0   1.3e-09   9.4e-08     104     195 ..     261     356 ..     237     384 .. 0.78
   3 ?   -2.5   0.0       9.9   7.3e+02      58     112 ..     430     483 ..     422     487 .. 0.77
   4 !   14.1   0.0   8.4e-05    0.0062      15     201 ..     534     724 ..     525     733 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 9e-07
   TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllkll 46 
                 + +++++ +lk+ +n+vy l+G nG+Gkstllk +
  MMETSP1061-20121228|3894_1 111 EASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 567889999***********************976 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 1.3e-09
   TIGR03740 104 rieevlkivdlentekkkakqfslGmkqrlGiaiall....nkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiG 195
                 + +++l+ +++++ + + ++++sl  ++ + +  a +     +  ll+ldePtnGld  G+  lr++i        tv++ sh +  ++ +a  i 
  MMETSP1061-20121228|3894_1 261 HQNDLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDVATDIV 356
                 457788888899999999999998776666555555422225779***********************99999999999****9999988876554 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 9.9
   TIGR03740  58 lldgrewtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkiv 112
                 +++ +e ++k +++  +  ++P     l+  + lk+  +++++p++ ++ v+ +v
  MMETSP1061-20121228|3894_1 430 KIERHEHSKKTFESQTA-ADAPVERRGLSVAQRLKLAEITKTVPDKAVQFVFPKV 483
                 56777777777776544.6888888999999999999999999999998887666 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 8.4e-05
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeil.ldgrewtrkdlkkiGsliesPa..lyenltarenlkvrtlllglpesrieevlkivdlente..kkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGk 201
                 v + v+l +++     llGp G+  s l+k+l+  l +t+G i    g ++   d  +  + +e+P   l ++ +a+    +     +  e+ + + l   +l+  +  k     +s G   rl +a   +++P +l l+ Pt  ld   ++ l + ++ ++   i v   +  l  +e++   + + +eGk
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIHhCSGLTIGCCDGGDPTANLEDPNgfLADHPSATALEYLSDRYPNTTETDLRSHLAAFGLSPASqaKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNGTLILVCQDASFLRSLEEVRCVVIVPEEGK 724
                 5677888888888899****887.699****************73689999999999999999*9973344666666555566777888999999*******98655114555678999****************************877777766666665555555555555655555555555555555 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0018      0.13     350     381 ..     114     145 ..     100     150 .. 0.82
   2 !   13.8   0.0   5.1e-05    0.0037     478     529 ..     288     344 ..     270     345 .. 0.78
   3 !   36.9   0.0   5.1e-12   3.7e-10     347     515 ..     529     691 ..     497     701 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0018
   TIGR02868 350 vlkgvsldlepGervavvGasGaGKstLlall 381
                  l++ +l+l   +   +vG+ G+GKstLl+ +
  MMETSP1061-20121228|3894_1 114 LLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 6777888888888999*************865 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 5.1e-05
   TIGR02868 478 qRlalARaLl....adapvllLDEPtehLDaeteeelledLlaaee.grtvvlvthr 529
                 + ++l  a +    ++  +llLDEPt +LD++   +l +++ + ++ + tvv+v+h+
  MMETSP1061-20121228|3894_1 288 KEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLApSATVVIVSHD 344
                 555555555555557889******************999999666516668888886 PP

  == domain 3    score: 36.9 bits;  conditional E-value: 5.1e-12
   TIGR02868 347 aee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevt.ldgvsvaslses....evrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl 515
                 + e  v++ v+l + +G r+ ++G+ G+  s L+++la+ l+p +G++   +g+ +  ++      ++     +la+++   ++t +e l    p+ t+ +l + L++ gL    +a     +t l    a lSGGe  Rl+lA + +++ pvl L  Pt hLD+e  ++l + L+
  MMETSP1061-20121228|3894_1 529 KREgfVFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIHhCSGLTIGCCDGGdptaNLEDPNGFLADHP---SATALEYLSDRYPNTTETDLRSHLAAFGLSPASQA-----KTAL----ACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLR 691
                 4444599******************999.699***************96367888877766511114555667777777...7999***************************9999.....5555....89***********************************999998876 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0027       0.2     337     368 ..     114     145 ..     105     152 .. 0.84
   2 !   18.9   0.0   1.7e-06   0.00013     478     523 ..     305     351 ..     276     358 .. 0.81
   3 !   29.5   0.0   1.1e-09     8e-08     338     524 ..     535     711 ..     521     716 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0027
   TIGR02857 337 alkevsltvepgelvalvGaSGaGKstllkll 368
                  l++  l++   +++ lvG  G+GKstllk +
  MMETSP1061-20121228|3894_1 114 LLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 6778888899999****************866 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 1.7e-06
   TIGR02857 478 pllllDEPtahLDaeteaevlealr.elaegrtvllvaHrlalaela 523
                 +llllDEPt  LD +   ++++ +  +la  +tv++v+H+  l++++
  MMETSP1061-20121228|3894_1 305 SLLLLDEPTNGLDVHGLIRLRQMIGdSLAPSATVVIVSHDVDLINDV 351
                 89*********************9615779**********9998765 PP

  == domain 3    score: 29.5 bits;  conditional E-value: 1.1e-09
   TIGR02857 338 lkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv..........ngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaelad 524
                  + v+l ++ g ++ l+G+ G+  s l+k+l+  + pteG+i+           +g +     ++++++  ++++ +P    +t +e +  + ++ +e++++  l + gl    +a           + a LSgG+  Rl LA + +++ p+l l  Pt+hLD e+  ++ + lre   + t++lv  + + ++ ++
  MMETSP1061-20121228|3894_1 535 FDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIHHcsgltigccdGGDP-----TANLEDPNGFLADHPS---ATALEYLSDRYPNTTETDLRSHLAAFGLSPASQAKT---------ALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLRE--WNGTLILVCQDASFLRSLE 711
                 5678999999999999999887.59999999999999999998764444444333332.....2356667899999995...778899999999999999999999999987555543.........4589*******************************************99..4667777777766666655 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00085     0.062       9      37 ..     115     143 ..     107     149 .. 0.88
   2 !   23.5   0.0   8.9e-08   6.5e-06     102     194 ..     259     355 ..     236     472 .. 0.84
   3 ?    5.3   0.0     0.029       2.1      10      50 ..     536     575 ..     532     582 .. 0.89
   4 !   17.9   0.0   4.4e-06   0.00032     116     180 ..     639     701 ..     620     732 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00085
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttik 37 
                 +++ +lk+ ++ v+ l+G nG GK+t++k
  MMETSP1061-20121228|3894_1 115 LEDATLKLLRNRVYCLVGRNGCGKSTLLK 143
                 678899********************987 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 8.9e-08
   TIGR01188 102 eeraeellelvelkeaadkkvktysgGmrrrlelaasli....aqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrv 194
                  ++ ++ll+ + + +   ++ +++s  +r+ + l a+ i    ++ ++l LDEPt GLD++    + ++i +      t+++ +h+++ ++ +a  +
  MMETSP1061-20121228|3894_1 259 GQHQNDLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDVATDI 355
                 5677899***************************99999433346799***************************************9998887665 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.029
   TIGR01188  10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGta 50 
                 d v+l ++eg    lLGP G   + ++k+L+  l P++Gt 
  MMETSP1061-20121228|3894_1 536 DCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTI 575
                 77999*************886.6889*************85 PP

  == domain 4    score: 17.9 bits;  conditional E-value: 4.4e-06
   TIGR01188 116 eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtillt 180
                  +a+  +  +sgG   rl la+  +++P vl L+ Pt+ LD+++ ra+ + ++e +   + il++
  MMETSP1061-20121228|3894_1 639 SQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNG--TLILVC 701
                 4567788999*********************************99998887777654..333333 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.4e-06   0.00025      15      47 ..     113     145 ..     107     150 .. 0.90
   2 !   20.8   0.0   5.8e-07   4.3e-05     163     221 ..     304     363 ..     281     387 .. 0.82
   3 !   18.9   0.0   2.3e-06   0.00017     139     201 ..     642     702 ..     626     725 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.4e-06
   TIGR00972  15 ealkdvnleikknkvtaliGpsGcGkstllrsl 47 
                 + l+d +l++ +n+v +l+G  GcGkstll+ +
  MMETSP1061-20121228|3894_1 113 SLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 568999************************976 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 5.8e-07
   TIGR00972 163 PevlLlDePtsaLDpiatekieeli.qeLkkkytivivthnmqqaarvsdktaffleGel 221
                   +lLlDePt  LD     ++ ++i ++L+ + t+viv h+++  + v+  ++ ++  +l
  MMETSP1061-20121228|3894_1 304 LSLLLLDEPTNGLDVHGLIRLRQMIgDSLAPSATVVIVSHDVDLINDVATDIVDMCAKKL 363
                 5689********************94569**************99999988877766555 PP

  == domain 3    score: 18.9 bits;  conditional E-value: 2.3e-06
   TIGR00972 139 kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivth 201
                 k++   LsGG   rl++a     +P vl l+ Pts LD ++++ + + ++e +   t+++v +
  MMETSP1061-20121228|3894_1 642 KTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWN--GTLILVCQ 702
                 556678************877778**************988777666655543..56666665 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0092      0.67     497     514 ..     129     146 ..     109     151 .. 0.81
   2 !   17.9   0.0   2.2e-06   0.00016     603     668 ..     281     351 ..     271     361 .. 0.86
   3 !    6.0   0.0     0.009      0.66     482     525 ..     534     576 ..     517     587 .. 0.90
   4 !   26.1   0.0   7.5e-09   5.5e-07     603     679 ..     647     725 ..     638     733 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0092
   TIGR03375 497 aiiGriGsGKstllklll 514
                  ++Gr+G+GKstllk + 
  MMETSP1061-20121228|3894_1 129 CLVGRNGCGKSTLLKKIY 146
                 689**********99765 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 2.2e-06
   TIGR03375 603 sLSgGQrqavalaRall....kdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrtslLelv 668
                 +LS  Qr+ + l  a +    ++ ++llLDEPt+ lD +   +l + + + la   T+v+v+H   l++ v
  MMETSP1061-20121228|3894_1 281 ELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLApSATVVIVSHDVDLINDV 351
                 5778899999998888733335789***********************9999989********99998755 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.009
   TIGR03375 482 aLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvl 525
                 + + v l i  G +  ++G  Gs  s l+k+l++ ++pteG++ 
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 567799**************999.69***************995 PP

  == domain 4    score: 26.1 bits;  conditional E-value: 7.5e-09
   TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdr....iivldkGri 679
                  LSgG    ++la + +++pp+l L  Pts+lD +s + l + L+e+    Tl+lv   +s+L+  +     +iv ++G+i
  MMETSP1061-20121228|3894_1 647 CLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWN--GTLILVCQDASFLRSLEEvrcvVIVPEEGKI 725
                 59********************************************95..6********9999876642222355577877 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.1e-05    0.0015       9      43 ..     110     144 ..     104     149 .. 0.88
   2 !   16.1   0.0   1.7e-05    0.0013     118     200 ..     265     351 ..     257     358 .. 0.73
   3 ?    1.2   0.0      0.64        47      12      55 ..     533     575 ..     525     580 .. 0.84
   4 !   22.5   0.0     2e-07   1.4e-05     111     196 ..     622     706 ..     609     715 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.1e-05
   TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLni 43 
                  + ++l++  lk+ + +++ +vG+ G+GKstlL  
  MMETSP1061-20121228|3894_1 110 PEASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKK 144
                 567899**************************975 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 1.7e-05
   TIGR03608 118 vlekvglekklkkkiyelsgGekqRv....alarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaeka 200
                 +l+++g++    +   els  +++ +    a++   +++ +l+l DEPt  LD +    + +++ +      t++iv Hd  + + +
  MMETSP1061-20121228|3894_1 265 LLHELGISDPDTRPCGELSLLQRKEIllcaACIGCRFTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDV 351
                 55666666666666666666666555222234444568999***************************************9876654 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.64
   TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkv 55 
                  +++ ++l i++G  + ++G  Gs  s l+ il++   + +g++
  MMETSP1061-20121228|3894_1 533 FVFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTI 575
                 689999***************998.5899999999777777766 PP

  == domain 4    score: 22.5 bits;  conditional E-value: 2e-07
   TIGR03608 111 kekkkkevlekvgl..ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpev 196
                 +e+ + ++l ++gl   ++ k+ +  lsgGe  R+ la i + +++++  + Pt+ LD ++  ++ + l+   e + t+i+v  d++ 
  MMETSP1061-20121228|3894_1 622 TETDLRSHLAAFGLspASQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLR---EWNGTLILVCQDASF 706
                 55667788999999655677888999*********************************99887766655...556778888777765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00048     0.035      18      49 ..     115     146 ..     111     152 .. 0.88
   2 !   22.4   0.0   2.4e-07   1.8e-05     127     215 ..     265     358 ..     236     379 .. 0.78
   3 ?    3.2   0.0      0.18        13      19      60 ..     536     576 ..     526     582 .. 0.87
   4 !   17.4   0.0   8.2e-06    0.0006     105     215 ..     607     717 ..     597     743 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00048
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvit 49 
                 l+d +l++ ++ + +++G nG Gk+tll  i 
  MMETSP1061-20121228|3894_1 115 LEDATLKLLRNRVYCLVGRNGCGKSTLLKKIY 146
                 6788999********************98775 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 2.4e-07
   TIGR03411 127 vleligLeekadkkaglLshGqkqw.Leigmll...vqepkllllDePvaGmtdeetektaell.kelakersvvvvehDmefvrelaekvtvl 215
                 +l+ +g+++  ++  g+Ls  q++  L  +  +     + +llllDeP+ G+  +   +  +++  +la + +vv+v hD++ ++++a+ +  +
  MMETSP1061-20121228|3894_1 265 LLHELGISDPDTRPCGELSLLQRKEiLLCAACIgcrFTNLSLLLLDEPTNGLDVHGLIRLRQMIgDSLAPSATVVIVSHDVDLINDVATDIVDM 358
                 566666666666667777766544303333333111346789******************9999468********************9988655 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.18
   TIGR03411  19 ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvl 60 
                 + ++l ++eg   +++Gp G+  + l+ +++ k  p+eG++ 
  MMETSP1061-20121228|3894_1 536 DCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 568899999999******886.5889*************986 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 8.2e-06
   TIGR03411 105 dksvlallfarlskeekerieevleligLeekadkka..glLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvl 215
                 + + l+ l  r  +++++ +++ l+  gL+   ++k+  + Ls G+  +L ++ + +++p +l l+ P++ +  e  +  a+ l+e ++  ++++v  D +f+r+l+e   v+
  MMETSP1061-20121228|3894_1 607 SATALEYLSDRYPNTTETDLRSHLAAFGLSPASQAKTalACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNG--TLILVCQDASFLRSLEEVRCVV 717
                 5567788999999999999**********976655541268*******************************99999999999998765..789999********98644333 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00028     0.021      15      45 ..     113     143 ..     106     149 .. 0.89
   2 !   14.2   0.1   6.5e-05    0.0048     115     198 ..     264     350 ..     251     358 .. 0.76
   3 !    7.9   0.0    0.0056      0.41      16      59 ..     534     576 ..     524     584 .. 0.89
   4 !   19.4   0.0   1.7e-06   0.00012     109     181 ..     622     696 ..     609     739 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00028
   TIGR03864  15 ralddvsltvakgefvaLLGpnGaGkstLfs 45 
                 + l+d +l++ + ++  L+G nG GkstL++
  MMETSP1061-20121228|3894_1 113 SLLEDATLKLLRNRVYCLVGRNGCGKSTLLK 143
                 5689999**********************86 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 6.5e-05
   TIGR03864 115 ealarlglaeraeekvreLnGGhrrrveiarall....hePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdevea 198
                 ++l++lg+++ ++    eL+  +r+ + +  a +     + +lLLlDe+t GLD++   +l +++ +   + + +v+   h vd +++
  MMETSP1061-20121228|3894_1 264 DLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSL-APSATVVIVSHDVDLIND 350
                 667888888888888888888888888888887633224679***************999999998877.455666667777776655 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.0056
   TIGR03864  16 alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeik 59 
                 ++d+v+l + +g  + LLGp G+  s L+++l++ ++ +eg+i+
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 689*****************886.699********999999996 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 1.7e-06
   TIGR03864 109 aeerieealarlglaeraeek..vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvre 181
                 +e+ ++++la +gl+  +++k  +  L+GG+  r+ +a   + +P +L l+ +t  LD+es +al + +re   +
  MMETSP1061-20121228|3894_1 622 TETDLRSHLAAFGLSPASQAKtaLACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNGT 696
                 55667778888888765554433889**************************************99999887644 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   8.4e-05    0.0061      13      48 ..     112     147 ..     107     151 .. 0.89
   2 !   18.6   0.0     3e-06   0.00022     164     218 ..     305     359 ..     288     370 .. 0.93
   3 ?    1.3   0.0      0.56        41      15      49 ..     534     567 ..     529     579 .. 0.81
   4 !   17.0   0.0     9e-06   0.00066     123     213 ..     626     713 ..     618     732 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.4e-05
   TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlag 48 
                  ++L++ +l++ +  v+ ++G+nG GkstL k +  
  MMETSP1061-20121228|3894_1 112 ASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKIYA 147
                 67899999***********************99876 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 3e-06
   TIGR01978 164 klaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvl 218
                 +l +LDe   GlDv +l  + +++ +   ++ +++i++h   l++ ++ d v + 
  MMETSP1061-20121228|3894_1 305 SLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDVATDIVDMC 359
                 689***********************************************99765 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.56
   TIGR01978  15 iLkglnlevkkGevhaimGpnGsGkstLskvlagh 49 
                 + + ++l +++G    ++Gp Gs  s L+k+la +
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKK 567
                 567799**************998.699***99865 PP

  == domain 4    score: 17.0 bits;  conditional E-value: 9e-06
   TIGR01978 123 lkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPd 213
                 l+++l+++ l+ + + ++     sGGe  r  +  +++ +P +  L+   s lDv++++++a+g+ +++    +l+++     +l++++  
  MMETSP1061-20121228|3894_1 626 LRSHLAAFGLSPASQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNG---TLILVCQDASFLRSLEEV 713
                 66666777777777777777889****************************************9988864...567777766666666544 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00037     0.027      18      55 ..     114     151 ..     101     156 .. 0.86
   2 !   13.8   0.0   0.00011     0.008     156     211 ..     303     358 ..     260     363 .. 0.77
   3 ?    5.1   0.0     0.049       3.6      20      61 ..     536     576 ..     523     586 .. 0.87
   4 !   18.7   0.0   3.4e-06   0.00025     115     202 ..     622     709 ..     602     725 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00037
   TIGR00960  18 aldnvtvkiekGelvflvGhsGaGkstllklilgiekp 55 
                  l++ t+k+ +  +  lvG  G+Gkstllk i + + p
  MMETSP1061-20121228|3894_1 114 LLEDATLKLLRNRVYCLVGRNGCGKSTLLKKIYAQKIP 151
                 589999999999999****************9987765 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 0.00011
   TIGR00960 156 kPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltl 211
                 + +lll dePt  ld +    + +++ +      tv++ +hd +l+++    ++ +
  MMETSP1061-20121228|3894_1 303 NLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDVATDIVDM 358
                 45799**********998888888888888999***************99998876 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.049
   TIGR00960  20 dnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkir 61 
                 d v + i++G  + l G+ G+  s l+k++ +   p++G i+
  MMETSP1061-20121228|3894_1 536 DCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 667888999999*****9998.69***************996 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 3.4e-06
   TIGR00960 115 ieervsaalekvGlk..dkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlve 202
                 +e+  +  l   Gl+   +ak+    lsgGe  r+ +a   +++P++l  + Pt+ ld e  r + + l+e n  Gt +lv   +  l +
  MMETSP1061-20121228|3894_1 622 TETDLRSHLAAFGLSpaSQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWN--GTLILVCQDASFLRS 709
                 55566667777788622466777789**********************************9999888888776..666666555444444 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.025       1.9      16      48 ..     113     145 ..     104     152 .. 0.83
   2 !   20.9   0.0     6e-07   4.4e-05     105     203 ..     253     356 ..     241     434 .. 0.82
   3 !   20.7   0.0     7e-07   5.1e-05      17     171 ..     534     685 ..     529     733 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.025
   TIGR03522  16 kaldevsfeaekGeivGflGPnGaGkstlmkil 48 
                   l++ +++  + ++  ++G nG Gkstl+k +
  MMETSP1061-20121228|3894_1 113 SLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 56778888888999999************9965 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 6e-07
   TIGR03522 105 lkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakall....hdPkvlildePttGldPnqlveirevi.keiakdktvilsthimqevealcdrvi 203
                 +++ +l ++ ++l+++ G++  + +  g+ls   r+ + l +a +     + ++l+ldePt Gld   l+ +r++i  ++a   tv++ +h +  ++ +  +++
  MMETSP1061-20121228|3894_1 253 FEDALLGQHQNDLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIgDSLAPSATVVIVSHDVDLINDVATDIV 356
                 566777788889999999999999999999999999999999987444458999*********************95579*******99998888877777766 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 7e-07
   TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkk..igalskGyrqrvGlakallhdPkvlildePttGldPnqlve 171
                 + d v + +++G  + +lGP G+  s lmkil+  l+++ G+++ +    +    +       l + n +  d      le+ ++ y  +    +  ++  ++  Gl++ +  k  ++ ls G   r  la   + +P vl l+ Pt+ ld + + +
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIHHCSGLTI-GCCDGGDPTANLEDPNGFLADHPSATALEYLSDRYPNT---TETDLRSHLAAFGLSPASQAKtaLACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRA 685
                 56788889999999******886.799****************99875544.55666677788999999999999999999999999766...6788999999****998776634789********************************876544 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.5e-07   1.1e-05      13      48 ..     112     147 ..     107     154 .. 0.91
   2 !   12.5   0.0   0.00022     0.016     125     203 ..     275     356 ..     264     369 .. 0.83
   3 ?    1.5   0.0      0.51        37      15      59 ..     534     577 ..     528     585 .. 0.85
   4 !    9.3   0.0    0.0021      0.16     131     204 ..     647     716 ..     618     743 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.5e-07
   TIGR03410  13 sevlrdvslevekgevvavlGrngvGkttllkalvg 48 
                 +++l+d +l++ +++v +++Grng Gk+tllk + +
  MMETSP1061-20121228|3894_1 112 ASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKIYA 147
                 67899***************************9976 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.00022
   TIGR03410 125 lkRrgGdLsGGqqqqlaiaRaLv....tePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladryl 203
                  +R  G+Ls  q++ + +  a +    t+  lllLDePt+G+    +  + ++i +  +    ++++v + +d+  ++a  ++
  MMETSP1061-20121228|3894_1 275 DTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLA-PSATVVIVSHDVDLINDVATDIV 356
                 5789999999999999888887644447889************9999999999987555.46899999999999999998766 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.51
   TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeiel 59 
                 v+  v+l +++g  +++lG  g   + l+k l   l  ++G+i+ 
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIHH 577
                 56678999999********8775.689**************9974 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.0021
   TIGR03410 131 dLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylv 204
                  LsGG    l +a   + +P +l L+ Pt  +    ++ +++ ++e     + +++lv q  +f ++l +  +v
  MMETSP1061-20121228|3894_1 647 CLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREW----NGTLILVCQDASFLRSLEEVRCV 716
                 59****************************99977777666666554....44789999999999887765433 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.4e-06   0.00069      22      58 ..     113     149 ..     103     157 .. 0.87
   2 !    9.7   0.0    0.0016      0.11     168     220 ..     304     356 ..     295     360 .. 0.87
   3 ?    3.4   0.0      0.13       9.6      23      66 ..     534     576 ..     518     584 .. 0.83
   4 !   16.2   0.0   1.6e-05    0.0011     147     188 ..     645     686 ..     627     715 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 9.4e-06
   TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanY 58 
                 + l++ +l++    + +l G+ G Gkstllk +ya+ 
  MMETSP1061-20121228|3894_1 113 SLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKIYAQK 149
                 6688999999999*********************975 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0016
   TIGR02324 168 rPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadrel 220
                   +LLLdePt  Ld       +++i +  a  a+++ + hd ++ + va+  +
  MMETSP1061-20121228|3894_1 304 LSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDVATDIV 356
                 5689************9999********************9888777776655 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.13
   TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgril 66 
                 v++ v+l +++G  ++l G+ G+  s l+k l ++  p  g+i 
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 778899**************998.599*****999999998875 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 1.6e-05
   TIGR02324 147 PatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvv 188
                  a  sGGe  R+ +a   + + P+L L+ Pt+ Ld    ++ 
  MMETSP1061-20121228|3894_1 645 LACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRAL 686
                 5789******************************87665544 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0031      0.23      17      50 ..     111     144 ..     101     152 .. 0.86
   2 !   14.3   0.0   6.5e-05    0.0047     122     209 ..     262     352 ..     252     363 .. 0.82
   3 ?    4.7   0.0     0.055         4      19      63 ..     533     576 ..     523     585 .. 0.88
   4 !   17.4   0.0   7.1e-06   0.00052     126     209 ..     630     711 ..     614     723 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0031
   TIGR02211  17 eievlkgvsleiekgelvaivGssGsGkstllhl 50 
                 e ++l++  l++ +  +  +vG  G Gkstll  
  MMETSP1061-20121228|3894_1 111 EASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKK 144
                 677899999**********************975 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 6.5e-05
   TIGR02211 122 akellekvglekrinkkpselsGGerqrvaiaralv....nkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkld 209
                  ++ll+++g+++  ++  +els  +r+ + +  a +    ++ +l+l dePt  ld +   ++ +++ +       ++++v+hd +l++ + 
  MMETSP1061-20121228|3894_1 262 QNDLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLA-PSATVVIVSHDVDLINDVA 352
                 5678999999999999999999999999887777764444799*******************9999998655.4566899*******99775 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.055
   TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevl 63 
                  v++ v+l i++g  + ++G  Gs  s l+ +l+    pt+G++ 
  MMETSP1061-20121228|3894_1 533 FVFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 68999***************9998.599**************996 PP

  == domain 4    score: 17.4 bits;  conditional E-value: 7.1e-06
   TIGR02211 126 lekvglekrinkkp..selsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkld 209
                 l ++gl+   + k+  + lsGGe  r  +a   +++P ++  + Pt++ld ++ +++ + l+e     n +l++v  d ++ + l+
  MMETSP1061-20121228|3894_1 630 LAAFGLSPASQAKTalACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREW----NGTLILVCQDASFLRSLE 711
                 556666654444431168********************************99988776666555....456888888888887776 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.5e-05    0.0011      15      50 ..     110     145 ..     102     150 .. 0.88
   2 !   12.4   0.0    0.0002     0.014     116     209 ..     263     359 ..     253     436 .. 0.87
   3 ?    6.5   0.1     0.012      0.88      21      62 ..     536     576 ..     525     584 .. 0.87
   4 !   12.0   0.0   0.00027      0.02     118     179 ..     629     692 ..     615     710 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.5e-05
   TIGR03265  15 eaftalkdislsvkkgelvclLGPsGCGkttLLrii 50 
                  + + l+d  l++ ++ + cl+G  GCGk+tLL+ i
  MMETSP1061-20121228|3894_1 110 PEASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 567889***************************977 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.0002
   TIGR03265 116 eelLelvglsgseekyPgqlsGGqqqrvaLarala....lsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmn 209
                 + lL+ +g+s+ +++  g ls  q++ + L  a +    +  +lLLLDeP   LD +   +Lr+ + +     + t ++v hd +    +a  iv m 
  MMETSP1061-20121228|3894_1 263 NDLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLA-PSATVVIVSHDVDLINDVATDIVDMC 359
                 6788888999999999999999999999999887644436789*********************9987543.4789999****998888888888775 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.012
   TIGR03265  21 kdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGail 62 
                 + ++l + +g   clLGP G   + L++i+a    +++G+i+
  MMETSP1061-20121228|3894_1 536 DCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 6699**************886.578******99999999997 PP

  == domain 4    score: 12.0 bits;  conditional E-value: 0.00027
   TIGR03265 118 lLelvgls.gseek.yPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkk 179
                  L+  gls  s+ k   + lsGG   r+ La   +  P +L L+ P s LD      L + l++
  MMETSP1061-20121228|3894_1 629 HLAAFGLSpASQAKtALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLRE 692
                 5666666522333313478********************************9988888888776 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.011      0.78      13      46 ..     112     145 ..     103     152 .. 0.86
   2 !   12.8   0.0   0.00018     0.013     111     208 ..     262     362 ..     250     386 .. 0.79
   3 !   10.9   0.0    0.0007     0.051      15      58 ..     534     576 ..     529     582 .. 0.90
   4 !   13.3   0.0   0.00013    0.0097     129     213 ..     646     729 ..     610     746 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.011
   TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrvi 46 
                    l+d  l++   ++ +l+G  G Gkstll+ i
  MMETSP1061-20121228|3894_1 112 ASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 56789999999999*****************987 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00018
   TIGR00968 111 veellelvqleklgdrypsqlsGGqrqrvalarala....vepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGk 208
                  ++ll+ +++++ + r   +ls  qr+ + l  a       +  +llldep   ld +    lr+ +       + t v+v+hd +   +va +iv +   k
  MMETSP1061-20121228|3894_1 262 QNDLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLA-PSATVVIVSHDVDLINDVATDIVDMCAKK 362
                 567777778888888888888888999888877653222256789***********9998889988765433.47899*****************9887655 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.0007
   TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpdsGril 58 
                 ++d vdl +++G  ++llGp Gs  s l++++a    p++G+i 
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGST-SCLMKILAKKLAPTEGTIH 576
                 5788****************9995.89*******9999999985 PP

  == domain 4    score: 13.3 bits;  conditional E-value: 0.00013
   TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqe...ealevadrivvlekGkieqvg 213
                 + lsGG+  r+ la     +p vl l+ p + ld +  + l   lr+       t ++v  d +      ev   ++v e+Gki ++ 
  MMETSP1061-20121228|3894_1 646 ACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNG----TLILVCQDASflrSLEEVRCVVIVPEEGKIRRIV 729
                 579************9999****************988889988887654....5567777765221233455556666888888765 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0012     0.091       2      29 ..     115     142 ..     114     152 .. 0.86
   2 !   17.2   0.1   7.5e-06   0.00055     141     202 ..     301     361 ..     282     365 .. 0.76
   3 ?   -1.5   0.0       3.8   2.8e+02       5      48 ..     538     576 ..     535     584 .. 0.74
   4 !   17.6   0.0   5.8e-06   0.00042     125     192 ..     647     710 ..     601     733 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0012
   TIGR02770   2 vqdvnlslkrgkvlalvGesGsGkslta 29 
                  +d  l+l r++v  lvG  G+Gks+  
  MMETSP1061-20121228|3894_1 115 LEDATLKLLRNRVYCLVGRNGCGKSTLL 142
                 578899*******************865 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 7.5e-06
   TIGR02770 141 lleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekG 202
                  ++ +ll+ DePt  lDv   +++ +++ +     + ++++++hD+  +  +a +++ m++ 
  MMETSP1061-20121228|3894_1 301 FTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLA-PSATVVIVSHDVDLINDVATDIVDMCAK 361
                 456789*************99998777765544.4567899***************999875 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 3.8
   TIGR02770   5 vnlslkrgkvlalvGesGsGksltalailglldkeltktsGeil 48 
                 v+l + +g  + l+G  Gs   +++  ++++l+k+l+ t+G i 
  MMETSP1061-20121228|3894_1 538 VDLCIDEGWRTCLLGPGGS---TSC--LMKILAKKLAPTEGTIH 576
                 5666666666777766554...555..68999999999999985 PP

  == domain 4    score: 17.6 bits;  conditional E-value: 5.8e-06
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvael 192
                  lsGG   R+++a  ++ ++p+l  + Pt+ lDv +   +    + lre +g+ ++l+  D + +  l
  MMETSP1061-20121228|3894_1 647 CLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALA---HGLREWNGT-LILVCQDASFLRSL 710
                 69*******************************98754443...456666665.55677775555444 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00057     0.042      15      48 ..     112     145 ..     105     151 .. 0.88
   2 !   14.0   0.0   7.5e-05    0.0055     128     227 ..     264     366 ..     251     379 .. 0.84
   3 ?    1.5   0.0      0.49        36      19      60 ..     536     576 ..     527     584 .. 0.87
   4 !   15.2   0.0   3.2e-05    0.0023     110     192 ..     610     694 ..     599     701 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00057
   TIGR02315  15 kqalknvnleikkGelvaviGlsGaGkstllrsi 48 
                  + l++  l++ +  +  ++G+ G Gkstll+ i
  MMETSP1061-20121228|3894_1 112 ASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 567899999999999*****************98 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 7.5e-05
   TIGR02315 128 elLervglaelaakradqLsGGqqqRvaiaRala....qqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfd 227
                 +lL+++g+++  ++ + +Ls  q++ + ++ a +     + +l+l DEP+  LD +   ++ +++ +       tv++  H+vdl +  a+ iv + a ++ ++
  MMETSP1061-20121228|3894_1 264 DLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDS-LAPSATVVIVSHDVDLINDVATDIVDMCAKKLWYY 366
                 6899***********************999998633336899************98877766666554.45567888889***************999888775 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.49
   TIGR02315  19 knvnleikkGelvaviGlsGaGkstllrsinrlveissgsil 60 
                 + v+l i++G  + ++G+ G+  s l++ + +   +++g+i 
  MMETSP1061-20121228|3894_1 536 DCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 568999************998.699*******9999999986 PP

  == domain 4    score: 15.2 bits;  conditional E-value: 3.2e-05
   TIGR02315 110 tlksllglfseedkekAlelLervgla..elaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrin 192
                 +l+ l  +++++ ++   + L+ +gl+  ++a++    LsGG+  R+ +a   +++p ++  + P++ LD +s + + + l++ n
  MMETSP1061-20121228|3894_1 610 ALEYLSDRYPNTTETDLRSHLAAFGLSpaSQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWN 694
                 56667778888888888899999999721455556679***********************************999999988766 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0029      0.21      16      51 ..     110     145 ..     104     151 .. 0.87
   2 !   18.9   0.0   2.5e-06   0.00019     119     216 ..     259     360 ..     241     364 .. 0.78
   3 !   15.5   0.0   2.8e-05     0.002     117     203 ..     621     705 ..     602     726 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0029
   TIGR02982  16 lrkqvlfdinleiepgeiviltGpsGsGkttlltli 51 
                  +  +l d  l++  + +  l G  G+Gk tll  i
  MMETSP1061-20121228|3894_1 110 PEASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 5667899**************************877 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 2.5e-06
   TIGR02982 119 kakaeelleavgleerldykpedlsgGqkqrvaiaralv....arPklvladePtaaldkksgrevvellqklareqgttillvthdnr.ildvadrivkmed 216
                  ++ ++ll+++g+ +   +   +ls  q++ + +  a +    ++ +l+l dePt  ld +    + +++   +   ++t+++v hd   i dva  iv m  
  MMETSP1061-20121228|3894_1 259 GQHQNDLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMI-GDSLAPSATVVIVSHDVDlINDVATDIVDMCA 360
                 46678999999999999999999*****9999998887733335789************98766665555.45667899********752779******9965 PP

  == domain 3    score: 15.5 bits;  conditional E-value: 2.8e-05
   TIGR02982 117 eakakaeelleavglee..rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr 203
                 +++++ ++ l a gl    + +   + lsgG   r+ +a   +++P ++  + Pt+ ld +s r++ + l    re + t++lv  d+ 
  MMETSP1061-20121228|3894_1 621 TTETDLRSHLAAFGLSPasQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGL----REWNGTLILVCQDAS 705
                 556667778888888762245555678***********************************98876655....455666677777765 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.028       2.1     329     364 ..     110     145 ..     101     152 .. 0.87
   2 !   17.9   0.0   2.7e-06    0.0002     455     521 ..     282     352 ..     276     363 .. 0.85
   3 ?   -2.1   0.0       3.1   2.3e+02     337     375 ..     538     575 ..     528     578 .. 0.86
   4 !   16.1   0.0   9.1e-06   0.00067     453     523 ..     646     713 ..     639     733 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.028
   TIGR01842 329 ekkktlkgisfalkaGealaiiGpsgsGkssLarll 364
                  +++ l++ +++l    +  ++G  g Gks+L + +
  MMETSP1061-20121228|3894_1 110 PEASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 45678999************************9987 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 2.7e-06
   TIGR01842 455 LsgGqrqRiaLaRal....ygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvd 521
                 Ls  qr+ i L  a     + +  l++LDeP   LD +G + l++ + +  a  +tvv+++h + l++ v 
  MMETSP1061-20121228|3894_1 282 LSLLQRKEILLCAACigcrFTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDVA 352
                 677788888887776333366889*****************************************998764 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 3.1
   TIGR01842 337 isfalkaGealaiiGpsgsGkssLarllvGvwlpasGsv 375
                 +++ +++G    ++Gp gs  s L+++l     p++G++
  MMETSP1061-20121228|3894_1 538 VDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTI 575
                 77899999999*****998.599*****99999999987 PP

  == domain 4    score: 16.1 bits;  conditional E-value: 9.1e-06
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdki 523
                 a LsgG   R+ La     +P ++ L+ P + LD e   ala+ l e    + t +++ + +s l++ +++
  MMETSP1061-20121228|3894_1 646 ACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLRE---WNGTLILVCQDASFLRSLEEV 713
                 679**************************************998765...567888888888877766654 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00012    0.0088     490     524 ..     108     142 ..     104     149 .. 0.89
   2 ?    4.5   0.0     0.024       1.8     637     680 ..     305     351 ..     280     364 .. 0.78
   3 ?    3.5   0.0     0.051       3.7     496     538 ..     534     575 ..     521     577 .. 0.86
   4 !   16.7   0.0     5e-06   0.00037     618     686 ..     648     716 ..     643     734 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00012
   TIGR00958 490 srpdkpvlkdLtftlepGevvalVGPsGsGKStva 524
                 + p+  +l+d t++l   +v +lVG +G GKSt  
  MMETSP1061-20121228|3894_1 108 NTPEASLLEDATLKLLRNRVYCLVGRNGCGKSTLL 142
                 579999**************************964 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.024
   TIGR00958 637 rvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstveka 680
                  +L+LDe t  LD+    +  q++ +   a s tv+++ h   +++ +
  MMETSP1061-20121228|3894_1 305 SLLLLDEPTNGLDVhgliRLRQMIGD-SLAPSATVVIVSHDVDLINDV 351
                 68************766666666665.457899********9999764 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.051
   TIGR00958 496 vlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqv 538
                 v+    + +  G  ++l GP Gs  S  + +l +   Pt+G++
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTI 575
                 66667788999*********988.69999999999******97 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 5e-06
   TIGR00958 618 lsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvekadkilvl 686
                 lsgG   r+ +A   + +P vL L+  tS LD+e+ ++l +  ++ + t++l+ +  s  +  +++  +
  MMETSP1061-20121228|3894_1 648 LSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNGTLILVCQDASFLRSLEEVRCV 716
                 8**************************************997777778999999998888887775333 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00098     0.072     488     524 ..     108     144 ..     103     153 .. 0.89
   2 ?    3.7   0.4     0.041         3     632     682 ..     302     355 ..     286     360 .. 0.79
   3 ?    0.5   0.0      0.37        27     495     537 ..     535     576 ..     525     579 .. 0.88
   4 !   25.5   0.1     1e-08   7.5e-07     615     689 ..     647     725 ..     638     733 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00098
   TIGR03796 488 saleapliedfslslkpGqrvAlvGgsGsGkstiakl 524
                 ++ ea l+ed +l+l   +   lvG  G+Gkst+ k 
  MMETSP1061-20121228|3894_1 108 NTPEASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKK 144
                 667899************999************9774 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.041
   TIGR03796 632 knPsiLilDEatsaLDaetEkaidenlr...rRgctciivaHRLstiRdcdeii 682
                 +n s+L+lDE t  LD +   ++ + +        t++iv+H +  i d+   i
  MMETSP1061-20121228|3894_1 302 TNLSLLLLDEPTNGLDVHGLIRLRQMIGdslAPSATVVIVSHDVDLINDVATDI 355
                 6789************9876555555541113578********99999986544 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.37
   TIGR03796 495 iedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeil 537
                  + ++l +++G r  l G+ Gs  s + k++a   +p++G+i 
  MMETSP1061-20121228|3894_1 535 FDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 5668999************999.599**************995 PP

  == domain 4    score: 25.5 bits;  conditional E-value: 1e-08
   TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRdcdei....ivlerGkv 689
                  lsGG+  Rl +A   ++nP +L l+  ts LD e  +a+ + lr+ + t i+v    s +R  +e+    iv e+Gk+
  MMETSP1061-20121228|3894_1 647 CLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNGTLILVCQDASFLRSLEEVrcvvIVPEEGKI 725
                 69************************************************************99985443377788887 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.095       6.9      27      45 ..     128     146 ..     117     154 .. 0.80
   2 !   14.4   0.1   6.4e-05    0.0047     107     200 ..     260     356 ..     246     364 .. 0.81
   3 ?    6.3   0.0     0.019       1.4      16      56 ..     537     576 ..     524     583 .. 0.86
   4 !   13.3   0.0   0.00014    0.0099     129     209 ..     648     727 ..     640     731 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.095
   TIGR01277  27 vailGesGaGkstllnlia 45 
                   ++G  G Gkstll+ i 
  MMETSP1061-20121228|3894_1 128 YCLVGRNGCGKSTLLKKIY 146
                 5799***********9875 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 6.4e-05
   TIGR01277 107 ekvedvarqvGiadylerlpeelsGGqrqrval.ar...clvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvv 200
                 ++ +d+ +++Gi+d   r  +els  qr+ + l a    c   +  +llldep   ld +    +  ++  +      t+++v+h+++ +  +a+ +v
  MMETSP1061-20121228|3894_1 260 QHQNDLLHELGISDPDTRPCGELSLLQRKEILLcAAcigCRFTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLA-PSATVVIVSHDVDLINDVATDIV 356
                 5557788899*******************99773331225678999************9988888888887765.578*********99998888876 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.019
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeik 56 
                 + dl +++G r  +lG+ G+  s l++++a  l p++G+i+
  MMETSP1061-20121228|3894_1 537 CVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 6789*************886.699**************985 PP

  == domain 4    score: 13.3 bits;  conditional E-value: 0.00014
   TIGR01277 129 lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaias...qvvvvedGkikv 209
                 lsGG+  r+ la   +++ p+l l+ p s ld     e +  +++   e + tl+lv+ + s +++  +    v+v e+Gki+ 
  MMETSP1061-20121228|3894_1 648 LSGGETMRLVLATISMENPPVLCLEHPTSHLDV----ESVRALAHGLREWNGTLILVCQDASFLRSLEEvrcVVIVPEEGKIRR 727
                 9****************************9995....55555677778999999999999887766543110334447888865 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0     0.063       4.6       8      28 ..     127     147 ..     120     151 .. 0.83
   2 !   25.6   0.1   2.5e-08   1.8e-06      96     183 ..     264     355 ..     260     363 .. 0.82
   3 ?   -0.1   0.0       1.9   1.4e+02       3      41 ..     542     579 ..     540     593 .. 0.75
   4 !    9.0   0.0     0.003      0.22     107     159 ..     641     693 ..     622     731 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.063
   TIGR03771   8 llgllGpnGaGkttllrailg 28 
                 + +l+G nG Gk+tll+ i +
  MMETSP1061-20121228|3894_1 127 VYCLVGRNGCGKSTLLKKIYA 147
                 6689************99875 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 2.5e-08
   TIGR03771  96 dalervklteladrpvGelsGGqrqrvlvarala....vkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrv 183
                 d l++  +++   rp Gels  qr+ +l+  a      ++ slllldep  Gld+    +l +++ +  +   ++++++hd+    +++  +
  MMETSP1061-20121228|3894_1 264 DLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDVATDI 355
                 5677788888899**************998775323336789**********************998888899999****987666666555 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 1.9
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvag 41 
                 +d+G   +llGp G+  + l++ +   +++++G+++  +
  MMETSP1061-20121228|3894_1 542 IDEGWRTCLLGPGGST-SCLMKILAKKLAPTEGTIHHCS 579
                 56777789****8764.5677777778899999998655 PP

  == domain 4    score: 9.0 bits;  conditional E-value: 0.003
   TIGR03771 107 adrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeel 159
                 a+ ++  lsGG+  r+++a     +p +l l+ p + ld+ s   l++ ++e 
  MMETSP1061-20121228|3894_1 641 AKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREW 693
                 5567788*********************************9999888766654 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0033      0.24      16      47 ..     114     145 ..     105     155 .. 0.84
   2 !   14.3   0.0   3.1e-05    0.0022     117     211 ..     258     355 ..     240     379 .. 0.72
   3 ?   -3.0   0.0       5.5     4e+02      18      48 ..     536     565 ..     534     573 .. 0.81
   4 !   12.8   0.0   8.5e-05    0.0062     396     438 ..     640     682 ..     623     733 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0033
   TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmkvl 47 
                  l++ +lkl    +  l G nG+Gkstl+k +
  MMETSP1061-20121228|3894_1 114 LLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 5788899999999***************9854 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 3.1e-05
   TIGR02633 117 mvlrakellrelkldasnvtrpvsdlGlGqqqlveiaka.ln...kqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdti 211
                 + +  ++ll+el ++ +++trp ++l l q++ + +  a +     +  ll+ldep+  l  +    l ++i d  a + + v +sh ++ ++ v+  i
  MMETSP1061-20121228|3894_1 258 LGQHQNDLLHELGIS-DPDTRPCGELSLLQRKEILLCAAcIGcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDVATDI 355
                 455667788888886.47888888888877665554443133111456788888888888888888888888888888888888888888777776554 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 5.5
   TIGR02633  18 dnidlklraGeivslcGenGaGkstlmkvls 48 
                 d +dl ++ G    l G  G+  s lmk+l+
  MMETSP1061-20121228|3894_1 536 DCVDLCIDEGWRTCLLGPGGS-TSCLMKILA 565
                 678888888988999998776.699****97 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 8.5e-05
   TIGR02633 396 spdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGa 438
                 +   ++a lsGG+  + vla + + np vl l+ pt  +dv +
  MMETSP1061-20121228|3894_1 640 QAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVES 682
                 4567899*********************************976 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0073      0.54     346     377 ..     112     143 ..     107     148 .. 0.85
   2 ?    3.3   0.0     0.069         5     487     534 ..     302     350 ..     255     363 .. 0.76
   3 ?    4.3   0.0     0.034       2.5     347     390 ..     533     575 ..     510     580 .. 0.88
   4 !   18.1   0.0   2.1e-06   0.00016     470     515 ..     647     692 ..     639     736 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0073
   TIGR02203 346 realdsislkveaGevvalvGrsGsGkstlvn 377
                 ++ l++  lk+   +v  lvGr G Gkstl++
  MMETSP1061-20121228|3894_1 112 ASLLEDATLKLLRNRVYCLVGRNGCGKSTLLK 143
                 56788888999999999************987 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.069
   TIGR02203 487 kdaPiLiLDeatsaLDnes.eRlvqaaLerlmkgRttlviahRLstiek 534
                  +  +L+LDe t  LD     Rl q   + l    t ++++h +  i++
  MMETSP1061-20121228|3894_1 302 TNLSLLLLDEPTNGLDVHGlIRLRQMIGDSLAPSATVVIVSHDVDLIND 350
                 57789***********98725777888899************9988875 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.034
   TIGR02203 347 ealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGei 390
                  ++d ++l +++G ++ l G+ Gs  s l+++l++ + p++G i
  MMETSP1061-20121228|3894_1 533 FVFDCVDLCIDEGWRTCLLGPGGST-SCLMKILAKKLAPTEGTI 575
                 57899****************9995.99**************98 PP

  == domain 4    score: 18.1 bits;  conditional E-value: 2.1e-06
   TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLer 515
                  LsGG   Rl +a   + + P+L L+  ts LD es R++ + L +
  MMETSP1061-20121228|3894_1 647 CLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLRE 692
                 69************************************99988876 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00051     0.038      23      57 ..     111     145 ..      99     152 .. 0.86
   2 ?    6.2   0.0     0.018       1.3     168     224 ..     303     358 ..     240     368 .. 0.74
   3 !    7.8   0.0     0.006      0.44      21      70 ..     529     577 ..     505     583 .. 0.80
   4 !    7.8   0.0    0.0061      0.45     134     229 ..     630     725 ..     610     739 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00051
   TIGR02769  23 rkavldnvslsleeGetvallGrsGaGkstlarll 57 
                  +++l++  l+l +     l+Gr G+Gkstl + +
  MMETSP1061-20121228|3894_1 111 EASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 56789999**********************98765 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.018
   TIGR02769 168 ePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvl 224
                 +  l++lde    ld++  + + +++ +   +   ++++++hd+ l++ +a  ++ +
  MMETSP1061-20121228|3894_1 303 NLSLLLLDEPTNGLDVHGLIRLRQMIGDSL-APSATVVIVSHDVDLINDVATDIVDM 358
                 56799**********998777666665544.45567899***********9998866 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.006
   TIGR02769  21 kqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsf 70 
                 k    v+d v+l ++eG    llG  G+  s l ++l     P++G++++
  MMETSP1061-20121228|3894_1 529 KREGFVFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIHH 577
                 44557999****************9887.699******9999****9975 PP

  == domain 4    score: 7.8 bits;  conditional E-value: 0.0061
   TIGR02769 134 lelvelrs.evldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaq...rvlvldeGqi 229
                 l + +l++ ++++   + lsGG   r+ +a     +P ++ l+   s ld+    s+ +l + l++  G+  +++  d +  +++ +    v+v +eG+i
  MMETSP1061-20121228|3894_1 630 LAAFGLSPaSQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVE---SVRALAHGLREWNGTL-ILVCQDASFLRSLEEvrcVVIVPEEGKI 725
                 566677651455556688*************9999***************86...4556667788888874.5677775555554432004555577876 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00059     0.043     469     506 ..     111     148 ..      92     153 .. 0.83
   2 ?    3.1   0.0     0.065       4.8     593     658 ..     281     351 ..     267     364 .. 0.78
   3 !   19.7   0.0   6.1e-07   4.5e-05     592     669 ..     646     725 ..     639     734 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00059
   TIGR01846 469 spevlsnlsldikaGeviGivGpsGsGkstltkllqrl 506
                 ++++l++ +l++   +v  +vG+ G+Gkstl k +   
  MMETSP1061-20121228|3894_1 111 EASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKIYAQ 148
                 45689**************************9977655 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.065
   TIGR01846 593 alsGGqrqrialaralv....anPrilildeatsaldyeseavimrnl.reickgrtviiiahrlstvraa 658
                 +ls  qr+ i l  a +    +n  +l+lde t  ld +    + + + ++++ + tv+i++h ++ + ++
  MMETSP1061-20121228|3894_1 281 ELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIgDSLAPSATVVIVSHDVDLINDV 351
                 66777788887777765222268899************9876665555578999*********99888764 PP

  == domain 3    score: 19.7 bits;  conditional E-value: 6.1e-07
   TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadr....ilvlekGki 669
                 a lsGG   r+ la   + nP +l l+  ts ld es +++ + lre   + t+i +    s +r+ ++    ++v e+Gki
  MMETSP1061-20121228|3894_1 646 ACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREW--NGTLILVCQDASFLRSLEEvrcvVIVPEEGKI 725
                 679*******************************************96..56777776666666655541111344456655 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.038       2.8     302     330 ..     117     145 ..     111     152 .. 0.77
   2 !   11.5   0.0   0.00024     0.017     447     503 ..     305     360 ..     279     384 .. 0.82
   3 ?   -1.4   0.0       1.8   1.4e+02      16      59 ..     535     575 ..     526     587 .. 0.66
   4 !   14.3   0.0   3.3e-05    0.0024     428     496 ..     648     712 ..     638     741 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.038
   TIGR03269 302 nvslevkekeifGlvGtsGaGkttlskil 330
                 + +l++ ++ ++ lvG  G Gk+tl k +
  MMETSP1061-20121228|3894_1 117 DATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 45677888889999999999999987655 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00024
   TIGR03269 447 rivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrd 503
                  +++ldept  +d     ++ + i ++      t vivshd+d++++v   +  m  
  MMETSP1061-20121228|3894_1 305 SLLLLDEPTNGLDVHGLIRLRQMIGDSLA-PSATVVIVSHDVDLINDVATDIVDMCA 360
                 5789**********999999999998876.4789*************9876666655 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1.8
   TIGR03269  16 lknisleleeGevlGilGksGaGksvllhllrGldeyeptsGki 59 
                 +  ++l ++eG    +lG  G+  s l+++l   ++  pt+G i
  MMETSP1061-20121228|3894_1 535 FDCVDLCIDEGWRTCLLGPGGS-TSCLMKILA--KKLAPTEGTI 575
                 4556777777777777776665.466777764..4555666665 PP

  == domain 4    score: 14.3 bits;  conditional E-value: 3.3e-05
   TIGR03269 428 lseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcd 496
                 ls Ge  r+ la + + +p ++ l+ pt  +d  +     +++ +  +e + t ++v  d  f++++ +
  MMETSP1061-20121228|3894_1 648 LSGGETMRLVLATISMENPPVLCLEHPTSHLDVESV----RALAHGLREWNGTLILVCQDASFLRSLEE 712
                 788999999999999999999999999998885444....44555667888899999999888877644 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.067       4.9      20      51 ..     115     146 ..     105     153 .. 0.82
   2 !    9.6   0.0    0.0012     0.089     152     195 ..     302     345 ..     272     360 .. 0.76
   3 ?   -1.2   0.0       2.3   1.7e+02      20      61 ..     535     575 ..     530     580 .. 0.81
   4 !   16.8   0.0   7.9e-06   0.00058     127     178 ..     639     690 ..     620     727 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.067
   TIGR01288  20 vndlsftiaagecfgllgpngagkstiarlvl 51 
                 ++d ++ + +  ++ l+g ng+gkst+ + + 
  MMETSP1061-20121228|3894_1 115 LEDATLKLLRNRVYCLVGRNGCGKSTLLKKIY 146
                 6777788889999*************987765 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0012
   TIGR01288 152 ndpqllildepttgldpharhliwerlrsllargktilltthlm 195
                  +  ll+ldept gld h    + + +   la   t+++ +h +
  MMETSP1061-20121228|3894_1 302 TNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDV 345
                 45689*************98888888888889999998888855 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 2.3
   TIGR01288  20 vndlsftiaagecfgllgpngagkstiarlvlglispdegki 61 
                  + + ++i +g    llgp g+  s + +++    +p eg+i
  MMETSP1061-20121228|3894_1 535 FDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTI 575
                 566677888898999****886.5888899999999999998 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 7.9e-06
   TIGR01288 127 skadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerl 178
                 s+a++ +a lsgg   rl la+  +++p +l l+ pt+ ld  +   +   l
  MMETSP1061-20121228|3894_1 639 SQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGL 690
                 8999*************************************87655555555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.066       4.8     351     385 ..     110     144 ..     107     150 .. 0.87
   2 ?    5.0   0.1     0.022       1.6     493     538 ..     302     348 ..     280     361 .. 0.76
   3 !    6.7   0.0     0.007      0.51     350     398 ..     529     576 ..     514     589 .. 0.86
   4 !   12.8   0.0    0.0001    0.0073     476     521 ..     647     692 ..     640     729 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.066
   TIGR02204 351 pdqkaldgldltvrpGetvalvGPsGaGkstllel 385
                 p+   l++  l++   ++  lvG  G Gkstll+ 
  MMETSP1061-20121228|3894_1 110 PEASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKK 144
                 6777889999999999999*************975 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.022
   TIGR02204 493 kdapiLLLdeatsaLdaeseqlvqqal.eelmkgrttlviahrLatv 538
                  +  +LLLde t+ Ld +   +++q + ++l    t ++++h +  +
  MMETSP1061-20121228|3894_1 302 TNLSLLLLDEPTNGLDVHGLIRLRQMIgDSLAPSATVVIVSHDVDLI 348
                 56789**************9999999835666677777788876655 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.007
   TIGR02204 350 rpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGail 398
                 + +  ++d +dl +++G +  l GP G+  s l+++l +   P++G+i 
  MMETSP1061-20121228|3894_1 529 KREGFVFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 566778999****************886.699**************995 PP

  == domain 4    score: 12.8 bits;  conditional E-value: 0.0001
   TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqalee 521
                  LsGG   r+ +a   +++ p+L L+  ts Ld es +++ + l e
  MMETSP1061-20121228|3894_1 647 CLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLRE 692
                 59**********************************8887766654 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1     0.023       1.7      31      77 ..     105     151 ..      84     160 .. 0.81
   2 !    6.4   0.0    0.0081      0.59     183     220 ..     302     340 ..     267     344 .. 0.79
   3 !   19.9   0.0   6.9e-07   5.1e-05     147     205 ..     632     686 ..     620     700 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.023
   TIGR00955  31 larkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsek 77 
                   ++ pe +ll++ + ++    +  ++G  G GK+TLl+ +  ++  
  MMETSP1061-20121228|3894_1 105 SGKNTPEASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKIYAQKIP 151
                 445558999999999999999999**************998776655 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0081
   TIGR00955 183 tdPilLfcDEPTsGLDsfsaasvvkvL.kklaqkgktvi 220
                 t+ +lL++DEPT GLD      + +++  +la + ++vi
  MMETSP1061-20121228|3894_1 302 TNLSLLLLDEPTNGLDVHGLIRLRQMIgDSLAPSATVVI 340
                 66789***********87766666655234555555555 PP

  == domain 3    score: 19.9 bits;  conditional E-value: 6.9e-07
   TIGR00955 147 elgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasv 205
                 + gL+ + + ++     +  lSgGe  Rl la+  +++P++L +  PTs LD  s   +
  MMETSP1061-20121228|3894_1 632 AFGLSPASQAKTA----LACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRAL 686
                 5666666666665....668********************************8876655 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00023     0.017       1      32 [.     115     146 ..     115     154 .. 0.84
   2 !    7.3   0.1    0.0095       0.7     134     186 ..     305     356 ..     271     362 .. 0.80
   3 !    7.6   0.0    0.0076      0.55       4     152 ..     538     685 ..     535     717 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00023
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnlia 32 
                 l+d  l++ +    +l+g  gcgkstll  i 
  MMETSP1061-20121228|3894_1 115 LEDATLKLLRNRVYCLVGRNGCGKSTLLKKIY 146
                 56778889999999**************8775 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0095
   TIGR01184 134 klllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvv 186
                  lllldep   ld      l++ + +     ++tv++v+hdvd    ++  +v
  MMETSP1061-20121228|3894_1 305 SLLLLDEPTNGLDVHGLIRLRQMIGDS-LAPSATVVIVSHDVDLINDVATDIV 356
                 689**********99988887655554.456789*********7655555555 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.0076
   TIGR01184   4 vdleikkgefislighsgcgkstllnliaglekptsgavi.legkeite.pgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaadkr..peqlsggmkqrvaiaralsirpklllldepfgaldaltree 152
                 vdl i +g   +l+g  g   s l+ ++a    pt+g+++   g  i    g d    +++        + +  a a++      +++  ++ +++h++  gl+ a++ +   + lsgg   r+ +a      p +l l+ p   ld  +   
  MMETSP1061-20121228|3894_1 538 VDLCIDEGWRTCLLGPGG-STSCLMKILAKKLAPTEGTIHhCSGLTIGCcDGGDPTANLEDPN---GFLADHPSATALEYLSDRYPNT-TETDLRSHLAAFGLSPASQAKtaLACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRA 685
                 566666666666666544.34566666666666666665413444443212333333333222...2223333344554444444433.445578999999999887655115689***********999999*********99999755544 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00046     0.034     487     536 ..     301     351 ..     280     395 .. 0.86
   2 !   15.6   0.0   1.4e-05     0.001     472     513 ..     648     686 ..     641     725 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00046
   TIGR01192 487 lknapilvldeatsaldvetearvkdai.dalrknrttfiiahrlstvrea 536
                 + n  +l+lde t  ldv   +r+++ i d+l    t  i++h +  + + 
  MMETSP1061-20121228|3894_1 301 FTNLSLLLLDEPTNGLDVHGLIRLRQMIgDSLAPSATVVIVSHDVDLINDV 351
                 468899********************9989*************99998874 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.4e-05
   TIGR01192 472 lsggerqrlaiarailknapilvldeatsaldvetearvkda 513
                 lsgge  rl +a   + n p+l l+  ts ldve+   v++ 
  MMETSP1061-20121228|3894_1 648 LSGGETMRLVLATISMENPPVLCLEHPTSHLDVES---VRAL 686
                 9********************************96...4444 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0012     0.087       9      39 ..     115     145 ..     107     151 .. 0.87
   2 ?    3.3   0.0      0.11       7.9     146     203 ..     302     358 ..     256     364 .. 0.66
   3 !    7.7   0.0    0.0048      0.35      12      51 ..     538     576 ..     532     585 .. 0.90
   4 ?    2.3   0.0      0.21        15     130     162 ..     648     680 ..     637     711 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0012
   TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrll 39 
                 ++d+ l++    +++++G  G+Gkstl++ +
  MMETSP1061-20121228|3894_1 115 LEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 679999*********************9966 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.11
   TIGR01186 146 aePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivil 203
                 ++  lll+de+   ld      l++ + +     + t+v ++hd+d    ++  iv +
  MMETSP1061-20121228|3894_1 302 TNLSLLLLDEPTNGLDVHGLIRLRQMIGD-SLAPSATVVIVSHDVDLINDVATDIVDM 358
                 5778999******9996444445554444.3345789*********887777777655 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.0048
   TIGR01186  12 vdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkil 51 
                 vdl i+eG   +++G+ Gs  s l+++l + + Pt+G i+
  MMETSP1061-20121228|3894_1 538 VDLCIDEGWRTCLLGPGGST-SCLMKILAKKLAPTEGTIH 576
                 899*************9985.89**************995 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.21
   TIGR01186 130 lsGGmqqrvGlaralaaePdlllmdeafsaldP 162
                 lsGG   r+ la     +P++l ++ + s ld 
  MMETSP1061-20121228|3894_1 648 LSGGETMRLVLATISMENPPVLCLEHPTSHLDV 680
                 9****************************9995 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0037      0.27      22      54 ..     113     145 ..      93     151 .. 0.88
   2 !    7.9   0.0     0.004      0.29     112     202 ..     255     347 ..     248     366 .. 0.77
   3 !    9.0   0.0    0.0018      0.13     133     174 ..     642     683 ..     625     703 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0037
   TIGR03258  22 vvlddlsleieaGellallGksGsGkttllrav 54 
                  +l+d +l++    +  l+G+ G+Gk+tll+ +
  MMETSP1061-20121228|3894_1 113 SLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 5789999999999*****************987 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.004
   TIGR03258 112 kaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralv....vrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrde 202
                 +al+ +   d l  +++sd  +r   +ls  q++ + l  a +     +  +llldep   ld +    +++ +       p  tv++v+hd d 
  MMETSP1061-20121228|3894_1 255 DALLGQHQNDLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGD--SLAPSATVVIVSHDVDL 347
                 67777888889999999999999999999999999988766432222345789**********9877777777653..4569**********875 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.0018
   TIGR03258 133 arlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlr 174
                 +   a lsGG   r+ la   + +p vl l+ p s ld +  
  MMETSP1061-20121228|3894_1 642 KTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESV 683
                 445578*************9999***************8643 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00051     0.037     488     519 ..     113     144 ..     108     149 .. 0.91
   2 ?   -1.8   0.1       2.3   1.7e+02     628     674 ..     302     350 ..     280     363 .. 0.73
   3 ?    2.7   0.0       0.1       7.3     489     532 ..     534     576 ..     509     583 .. 0.88
   4 !    7.1   0.0    0.0049      0.36     610     676 ..     646     711 ..     627     733 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00051
   TIGR01193 488 evledislkikknekitlvGlsGsGkstlakl 519
                 ++led +lk+ +n++ +lvG  G Gkstl k 
  MMETSP1061-20121228|3894_1 113 SLLEDATLKLLRNRVYCLVGRNGCGKSTLLKK 144
                 689**************************985 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 2.3
   TIGR01193 628 sdskvlildestsnldl...ltekkivenllklkdktiifvahrlsvakk 674
                 ++  +l+lde t  ld+   +  ++++ + l     t++ v+h +++ + 
  MMETSP1061-20121228|3894_1 302 TNLSLLLLDEPTNGLDVhglIRLRQMIGDSLAP-SATVVIVSHDVDLIND 350
                 677899**********64447778888877776.7899999998876544 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.1
   TIGR01193 489 vledislkikknekitlvGlsGsGkstlakllvkffqaesGeil 532
                 v++ ++l i++  +++l+G  Gs  s l+k+l k   +++G+i+
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGST-SCLMKILAKKLAPTEGTIH 576
                 677899**************9995.89**************996 PP

  == domain 4    score: 7.1 bits;  conditional E-value: 0.0049
   TIGR01193 610 ssisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsvakksd 676
                 + +sgG   rl la   + +  vl l+  ts+ld+   + + + l +  + t+i+v    s  +  +
  MMETSP1061-20121228|3894_1 646 ACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREW-NGTLILVCQDASFLRSLE 711
                 579*******************************99888888777777.788888876655544433 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.06       4.4     622     655 ..     114     147 ..      63     152 .. 0.73
   2 !   18.3   0.1   1.6e-06   0.00011     846     903 ..     300     358 ..     282     361 .. 0.88
   3 ?   -2.7   0.1       3.6   2.6e+02     236     295 ..     406     468 ..     375     486 .. 0.52
   4 ?    1.7   0.0      0.16        12     826     872 ..     645     688 ..     625     710 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.06
   TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLindiLv 655
                  l d ++++  +++ ++ G  g GkstL+++i +
  MMETSP1061-20121228|3894_1 114 LLEDATLKLLRNRVYCLVGRNGCGKSTLLKKIYA 147
                 4667777777777778888888888888777755 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 1.6e-06
   TIGR00630 846 rstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldvik.saDyiidl 903
                 r t+  l +lDePt GL ++ + +L +++    +   tvv++ h++d+i  +a  i+d+
  MMETSP1061-20121228|3894_1 300 RFTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINdVATDIVDM 358
                 66778899****************************************97357778887 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 3.6
   TIGR00630 236 deeesakkeel..fskkaaleea..glsleeleprlfsfnsplgaCpeCkGlGvkleldpekiv 295
                 +e + + k++    +k ++++++  ++  +e + + f +++ ++a  e +Gl v ++l    i 
  MMETSP1061-20121228|3894_1 406 KEASVS-KRKAgsKKKAKTIASHrkKIERHEHSKKTFESQTAADAPVERRGLSVAQRLKLAEIT 468
                 222222.222212233333444400444455666777777777777788888887777766665 PP

  == domain 4    score: 1.7 bits;  conditional E-value: 0.16
   TIGR00630 826 attLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLle 872
                    LsGGe+ r+ La+      ++  +  l+ Pt  L ++ ++ L +
  MMETSP1061-20121228|3894_1 645 LACLSGGETMRLVLATIS---MENPPVLCLEHPTSHLDVESVRALAH 688
                 457899999999888753...34567778888888888888887765 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0076      0.55     469     497 ..     115     143 ..     108     152 .. 0.77
   2 ?   -3.0   0.0       5.4   3.9e+02     607     648 ..     304     348 ..     280     358 .. 0.64
   3 ?    0.8   0.0      0.37        27     467     511 ..     533     576 ..     524     580 .. 0.88
   4 !   12.6   0.0   9.9e-05    0.0073     588     653 ..     647     712 ..     641     730 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0076
   TIGR03797 469 LddvslkiepGefvaivGaSGsGKStllr 497
                 L+d +lk        +vG  G+GKStll+
  MMETSP1061-20121228|3894_1 115 LEDATLKLLRNRVYCLVGRNGCGKSTLLK 143
                 5555566656666689************8 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5.4
   TIGR03797 607 PrillfDEATSALDN....rtQaiVsesleklkvtRiviAHRLSTi 648
                   +ll+DE T  LD     r  +++ +sl+  ++t +++ H +  i
  MMETSP1061-20121228|3894_1 304 LSLLLLDEPTNGLDVhgliRLRQMIGDSLAP-SATVVIVSHDVDLI 348
                 46899********963333456777777764.56777777766555 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.37
   TIGR03797 467 lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvl 511
                  v+d v l i++G    + G+ Gs  S l+++L     P++G+++
  MMETSP1061-20121228|3894_1 533 FVFDCVDLCIDEGWRTCLLGPGGS-TSCLMKILAKKLAPTEGTIH 576
                 68999****************999.59*******99999999997 PP

  == domain 4    score: 12.6 bits;  conditional E-value: 9.9e-05
   TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirnadr 653
                  lSGG   Rl++A   ++ P +l ++  TS LD ++ ++  + l + + t i++    S +r  + 
  MMETSP1061-20121228|3894_1 647 CLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNGTLILVCQDASFLRSLEE 712
                 69************************************************9999877776665554 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.034       2.5      16      43 ..     118     145 ..     107     150 .. 0.84
   2 ?    5.8   0.0      0.02       1.5     119     205 ..     269     358 ..     258     373 .. 0.69
   3 !    8.8   0.0    0.0025      0.18     130     170 ..     646     686 ..     616     751 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.034
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirli 43 
                 + l+l  + v  l Gr G+Gk++l++ i
  MMETSP1061-20121228|3894_1 118 ATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 566677778999************9976 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.02
   TIGR02142 119 LgiehLleRlpgkLsGGekqRvaigRAlL....ssPeLLlmDePLaaLDekrkkeilPyLerlsael..kiPilyvsHsldevarladrvvvl 205
                 Lgi+   +R  g+Ls   ++ + +  A +    ++  LLl+DeP   LD +    ++   + + ++l  +  ++ vsH++d ++ +a  +v +
  MMETSP1061-20121228|3894_1 269 LGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHG---LIRLRQMIGDSLapSATVVIVSHDVDLINDVATDIVDM 358
                 5565556666666666666666666555322227889************864...44444444454422345899999999999999888766 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.0025
   TIGR02142 130 gkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkei 170
                 + LsGGe  R  ++   + +P +L ++ P + LD ++ + +
  MMETSP1061-20121228|3894_1 646 ACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRAL 686
                 579*******************************9876655 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.026       1.9      20      51 ..     114     145 ..     105     152 .. 0.86
   2 ?    1.0   0.1      0.51        37     120     210 ..     261     354 ..     252     363 .. 0.73
   3 !   13.1   0.0   0.00011    0.0079     118     192 ..     623     699 ..     608     725 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.026
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircv 51 
                  l++ +l + + +++ ++g  g gkstl++ +
  MMETSP1061-20121228|3894_1 114 LLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 689999999*******************9865 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.51
   TIGR02314 120 kvtellalvglsdkkdsypsnlsggqkqrvaiarala....sepkvllcdeatsaldpattqsilellkeinrrl..gltillithemdvvkricde 210
                 + ++ll  +g+sd       +ls  q++ + +  a      ++  +ll de t  ld      ++ l + i   l  + t+++++h++d++  +   
  MMETSP1061-20121228|3894_1 261 HQNDLLHELGISDPDTRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVH---GLIRLRQMIGDSLapSATVVIVSHDVDLINDVATD 354
                 56788888888887777777888888888776665432222688899*********965...56677777777663358999******999887654 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 0.00011
   TIGR02314 118 krkvtellalvglsdkkdsyp..snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgl 192
                 ++ +   la  gls   ++    + lsgg+  r+ +a     +p vl  +  ts ld  + +++ + l+e n +l l
  MMETSP1061-20121228|3894_1 623 ETDLRSHLAAFGLSPASQAKTalACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNGTLIL 699
                 5556667888888876655441278**********************99*******************999988755 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.41        30      13      45 ..     112     144 ..     102     151 .. 0.82
   2 ?    2.0   0.0      0.28        21     165     217 ..     304     355 ..     256     377 .. 0.70
   3 ?    0.4   0.0      0.92        67      15      55 ..     534     573 ..     527     580 .. 0.80
   4 !   12.3   0.0   0.00022     0.016     137     218 ..     638     715 ..     626     736 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.41
   TIGR03005  13 ltvldglelevaaGekvaliGpsGsGkstilri 45 
                  ++l+++ l++ + +   l+G  G Gkst+l+ 
  MMETSP1061-20121228|3894_1 112 ASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKK 144
                 567888888888888999************985 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.28
   TIGR03005 165 pkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrv 217
                   +ll+de+t  ld + +  + +++ +       t+++v+h++ + +++a  +
  MMETSP1061-20121228|3894_1 304 LSLLLLDEPTNGLDVHGLIRLRQMIGDSL-APSATVVIVSHDVDLINDVATDI 355
                 45899*********987777666666533.35679999*****9999998655 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.92
   TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmtletideG 55 
                 v+d ++l +++G +  l+Gp Gs  s +++il    +  eG
  MMETSP1061-20121228|3894_1 534 VFDCVDLCIDEGWRTCLLGPGGST-SCLMKILAKKLAPTEG 573
                 78999999************9996.7788888765555555 PP

  == domain 4    score: 12.3 bits;  conditional E-value: 0.00022
   TIGR03005 137 adkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvl 218
                 a +a++  a lsGG+  r+ +a     +p vl ++ +ts ld e v  +   lr    e + t++lv  +  f r + +  +
  MMETSP1061-20121228|3894_1 638 ASQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLR----EWNGTLILVCQDASFLRSLEEVRC 715
                 5677888899************998889**************887776655554....678899999999999987766433 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0029      0.21      27      51 ..     125     149 ..     116     155 .. 0.84
   2 ?   -0.0   0.0       1.5   1.1e+02     161     205 ..     305     352 ..     297     362 .. 0.67
   3 ?    2.8   0.0      0.21        15      31      60 ..     549     577 ..     533     582 .. 0.83
   4 ?    1.3   0.0      0.59        43     136     176 ..     642     685 ..     636     724 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0029
   TIGR02323  27 GevlgivGesGsGkstllkalaarl 51 
                  +v ++vG  G Gkstllk + a+ 
  MMETSP1061-20121228|3894_1 125 NRVYCLVGRNGCGKSTLLKKIYAQK 149
                 6799***************997665 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 1.5
   TIGR02323 161 rlvfm.eptGGl.vsvqarllllrglvrelglaviivth.lavarlla 205
                  l+++ ept Gl v    rl  + g     + +v+iv+h + ++  +a
  MMETSP1061-20121228|3894_1 305 SLLLLdEPTNGLdVHGLIRLRQMIGDSLAPSATVVIVSHdVDLINDVA 352
                 566666******887766665443333345678899999776665555 PP

  == domain 3    score: 2.8 bits;  conditional E-value: 0.21
   TIGR02323  31 givGesGsGkstllkalaarlladaGevty 60 
                 +++G  Gs  s l+k la++l++++G++++
  MMETSP1061-20121228|3894_1 549 CLLGPGGS-TSCLMKILAKKLAPTEGTIHH 577
                 66777666.589***************987 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.59
   TIGR02323 136 rikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.v.svqa 176
                 ++  a +sGG   rl +a   + +p ++ +  pt  l v sv+a
  MMETSP1061-20121228|3894_1 642 KTALACLSGGETMRLVLATISMENPPVLCLeHPTSHLdVeSVRA 685
                 5566789************9999887777747999986325555 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0055       0.4      26      70 ..     101     145 ..      97     149 .. 0.87
   2 ?    6.1   0.0     0.014         1     181     235 ..     302     355 ..     262     476 .. 0.84
   3 ?    1.0   0.0      0.49        36     160     196 ..     643     679 ..     623     700 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0055
   TIGR03415  26 treeildktGlvlgvadasldveeGeilvlmGlsGsGkssllrav 70 
                 +r++  ++t +    +da+l++ +  +  l+G  G Gks+ll+ +
  MMETSP1061-20121228|3894_1 101 SRSRSGKNTPEASLLEDATLKLLRNRVYCLVGRNGCGKSTLLKKI 145
                 5667777788888899**************************977 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.014
   TIGR03415 181 teadillmdePfsald..PliraklqdellelqkklkktivfvshdldealklGnri 235
                 t+  +ll+deP   ld   lir +   +++      + t+v vshd+d    + + i
  MMETSP1061-20121228|3894_1 302 TNLSLLLLDEPTNGLDvhGLIRLR---QMIGDSLAPSATVVIVSHDVDLINDVATDI 355
                 456789*********944477754...34444455689*********9766665555 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.49
   TIGR03415 160 kkvgelsGGmqqrvGlarafateadillmdePfsald 196
                 +    lsGG   r+ la     + ++l ++ P s ld
  MMETSP1061-20121228|3894_1 643 TALACLSGGETMRLVLATISMENPPVLCLEHPTSHLD 679
                 445679***********98888889**********99 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.12       8.8    1233    1264 ..     113     144 ..      95     152 .. 0.69
   2 !    5.8   0.1    0.0056      0.41    1370    1459 ..     302     400 ..     280     438 .. 0.66
   3 !    5.1   0.0    0.0089      0.65     420     581 ..     512     680 ..     469     688 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.12
   TIGR01271 1233 avlqdlsfsveagqrvgllgrtgsgkstllsa 1264
                  ++l+d ++ +   +   l+gr g+gkstll  
  MMETSP1061-20121228|3894_1  113 SLLEDATLKLLRNRVYCLVGRNGCGKSTLLKK 144 
                  45566666666666666777777777777654 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0056
   TIGR01271 1370 skakillldepsafldpvtlqiirktlkqafs.nctvilsehrveallecqqflviegssvk......qyd..siqkllneasllkqalsaadrv.klfp 1459
                  +   +llldep+  ld   l  +r+ + ++++   tv++  h v+ + +  + +v + +  k      +yd  s+ k  +e+  lkq+l+   ++ +l+ 
  MMETSP1061-20121228|3894_1  302 TNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLApSATVVIVSHDVDLINDVATDIV-DMCAKKlwyypgNYDsySLTKEQKESFVLKQSLTMERKAgRLYG 400 
                  55679*************************984679********98887766544.33333322333356733467888888888888876554424443 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0089
   TIGR01271 420 rktangddglffsnlslyvt.pvlknislklekgqllavagstgsgkssllmmilg.elepsegkikhsgrisf..s....pqvswimp.gtikdn.iifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldv 581
                  ++   +d+ f + + l     v+  ++l ++ g   ++ g  gs  +s lm il  +l p+eg i+h   ++   +    p  +   p g + d      l y   ry    +  +l   +a +              lsgg+  r+ la     +  +  l+ p s+ldv
  MMETSP1061-20121228|3894_1 512 LQEFRRNDSEFATAFELKREgFVFDCVDLCIDEGWRTCLLGPGGS--TSCLMKILAkKLAPTEGTIHHCSGLTIgcCdggdPTANLEDPnGFLADHpSATALEYLSDRYPNTTE-TDLRSHLAAFGLSPASQAKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDV 680
                 344455677888888887541567778999999999999887765..677888876379*********7654431132221222233332444443234566777777766544.567777777777776666667777888888888888887888888888888888887 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.18        13       1      16 [.     130     145 ..     130     150 .. 0.87
   2 ?    2.1   0.0      0.24        18      95     161 ..     276     345 ..     258     365 .. 0.65
   3 !    8.4   0.0    0.0029      0.21      94     144 ..     641     691 ..     622     730 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.18
   TIGR01187   1 lLGpsGsGkttlLrll 16 
                 l+G  G+Gk+tlL+ +
  MMETSP1061-20121228|3894_1 130 LVGRNGCGKSTLLKKI 145
                 6899*********865 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.24
   TIGR01187  95 krkpsqlsGGqrqrvalaravv....kkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq 161
                 +r   +ls  qr+ + l  a +     +  +LLlDep   LD +   ++++ + +       tvv+v hD 
  MMETSP1061-20121228|3894_1 276 TRPCGELSLLQRKEILLCAACIgcrfTNLSLLLLDEPTNGLDVHGLIRLRQMIGDSLA-PSATVVIVSHDV 345
                 5555667777777777766654222235689***********8644333333322221.246788888875 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0029
   TIGR01187  94 akrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelk 144
                 ak     lsGG   r+ la   +++P +L l+ p s LD +    + + l+
  MMETSP1061-20121228|3894_1 641 AKTALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLR 691
                 5666778********************************876555555555 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00072     0.053     362     389 ..     120     147 ..     104     153 .. 0.78
   2 ?   -2.5   0.0         4     3e+02     464     542 ..     276     358 ..     259     363 .. 0.61
   3 ?   -1.7   0.0       2.4   1.7e+02     352     398 ..     530     575 ..     509     579 .. 0.87
   4 ?   -2.7   0.0       4.7   3.4e+02     469     495 ..     647     673 ..     641     685 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00072
   TIGR01194 362 lriasGelvyivGenGcGkstliklllG 389
                 l++ +  +  +vG nGcGkstl+k +  
  MMETSP1061-20121228|3894_1 120 LKLLRNRVYCLVGRNGCGKSTLLKKIYA 147
                 55556666779***********997765 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 4
   TIGR01194 464 ystttdlstGqrkrlalvnayleer....pvllldewaadqdpafkrvfyeellpdlkrrGktilvishd.dryfeladrlikl 542
                      +ls  qrk + l +a +  r     +lllde +   d     +   +++ d      t++++shd d   ++a  ++ +
  MMETSP1061-20121228|3894_1 276 TRPCGELSLLQRKEILLCAACIGCRftnlSLLLLDEPTNGLDVH-GLIRLRQMIGDSLAPSATVVIVSHDvDLINDVATDIVDM 358
                 55556777777777777666655442222567777777766643.334446677777777788888888844445566666655 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2.4
   TIGR01194 352 segfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGel 398
                  egf +  +dl i +G    ++G  G   s l+k+l     p eG +
  MMETSP1061-20121228|3894_1 530 REGFVFDCVDLCIDEGWRTCLLGPGG-STSCLMKILAKKLAPTEGTI 575
                 5899999*********9999999766.5799******9999999987 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 4.7
   TIGR01194 469 dlstGqrkrlalvnayleerpvlllde 495
                  ls G+  rl l +  +e+ pvl l+ 
  MMETSP1061-20121228|3894_1 647 CLSGGETMRLVLATISMENPPVLCLEH 673
                 5899******************99976 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0014       0.1    2058    2143 ..     269     358 ..     258     367 .. 0.81
   2 ?    0.8   0.0      0.11       8.2    2067    2109 ..     644     686 ..     624     714 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0014
   TIGR01257 2058 lglslyadrlagtysggnkrklstaialigcp....plvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlaim 2143
                  lg+s    r +g  s  +++ +  + a igc      l+lldept g+d +    l ++i   +  + +vv+ sh ++  + ++t +  m
  MMETSP1061-20121228|3894_1  269 LGISDPDTRPCGELSLLQRKEILLCAACIGCRftnlSLLLLDEPTNGLDVHGLIRLRQMIGDSLAPSATVVIVSHDVDLINDVATDIVDM 358 
                  555555566667777777777778889999964444699**************99*********************99999888877655 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.11
   TIGR01257 2067 lagtysggnkrklstaialigcpplvlldepttgmdpqarrml 2109
                       sgg+  +l  a   +  pp++ l+ pt+ +d ++ r l
  MMETSP1061-20121228|3894_1  644 ALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRAL 686 
                  4456799999999999999999999999999999999888876 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.055         4     470     497 ..     116     143 ..     109     164 .. 0.76
   2 ?   -3.9   1.4       9.8   7.2e+02      30      69 ..     399     438 ..     375     453 .. 0.67
   3 ?    7.2   0.0    0.0041       0.3     583     643 ..     647     707 ..     641     713 .. 0.95

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.055
   TIGR00954 470 eeLsfevksGnhlLiiGPnGcGKsslfR 497
                 e+ ++++   +   ++G nGcGKs l +
  MMETSP1061-20121228|3894_1 116 EDATLKLLRNRVYCLVGRNGCGKSTLLK 143
                 5556666666666789********9975 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 9.8
   TIGR00954  30 nkviekkkkravdaredesskeelkkesknselekkkkka 69 
                 + ++++ k+ +v++r+  s+k+ +++ s ++++e++++++
  MMETSP1061-20121228|3894_1 399 YGTLQHLKEASVSKRKAGSKKKAKTIASHRKKIERHEHSK 438
                 5566777777777777777777777777766666654332 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0041
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrksLw 643
                  LsgGe  R+ +A +    P    L+  ts + v+   +l + ++e + tl+ v++  s +
  MMETSP1061-20121228|3894_1 647 CLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRALAHGLREWNGTLILVCQDASFL 707
                 69******************************************************99876 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.13       9.6      84     109 ..     122     147 ..     100     159 .. 0.73
   2 ?    1.9   0.0     0.092       6.7     922     937 ..     305     320 ..     279     343 .. 0.78
   3 ?    2.3   0.0     0.068         5     189     248 ..     630     686 ..     612     705 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.13
   TIGR00956  84 ikpgelvvvLGrPgsGcstlLksias 109
                 +   ++  ++Gr g G+stlLk i +
  MMETSP1061-20121228|3894_1 122 LLRNRVYCLVGRNGCGKSTLLKKIYA 147
                 4556788899999******9999854 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.092
   TIGR00956 922 lllFlDePtsGLDsqt 937
                 +ll lDePt GLD + 
  MMETSP1061-20121228|3894_1 305 SLLLLDEPTNGLDVHG 320
                 6999*********865 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.068
   TIGR00956 189 laiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalef 248
                 la++GLs + + k     +  +sGGe  R+ +a +++ ++ ++c++  t  LD      +
  MMETSP1061-20121228|3894_1 630 LAAFGLSPASQAKT---ALACLSGGETMRLVLATISMENPPVLCLEHPTSHLDVESVRAL 686
                 66777777777765...46679******************************97554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      207  (0.0504632); expected 82.0 (0.02)
Passed Vit filter:                        82  (0.0199902); expected 4.1 (0.001)
Passed Fwd filter:                        56  (0.0136519); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              56  [number of targets reported over threshold]
# CPU time: 1.05u 0.19s 00:00:01.24 Elapsed: 00:00:01.18
# Mc/sec: 842.27
//
Query:       MMETSP1061-20121228|3897_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.50
# Mc/sec: 839.45
//
Query:       MMETSP1061-20121228|3899_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 548.80
//
Query:       MMETSP1061-20121228|3900_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.095   10.7   0.0      0.095   10.7   0.0    2.9  4  TIGR03917 Frankia_40_dom: Frankia paralogous domain


Domain annotation for each model (and alignments):
>> TIGR03917  Frankia_40_dom: Frankia paralogous domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   2.3e-05     0.095      17      34 ..       7      24 ..       5      24 .. 0.94
   2 ?    1.6   0.0     0.016        64      30      39 ..      52      61 ..      50      61 .. 0.90
   3 ?   -1.7   0.1      0.18   7.3e+02      33      38 ..      78      83 ..      77      83 .. 0.90
   4 ?   -3.7   0.0      0.71   2.9e+03      33      38 ..     103     108 ..     102     109 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.3e-05
   TIGR03917 17 aLaslPagArlvehfGDv 34
                a+a+++ +A + e fG++
  MMETSP1061-20121228|3900_1  7 AMAGMARDAKFLEYFGNT 24
                9***************86 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.016
   TIGR03917 30 hfGDvDlvLV 39
                +  D+D vLV
  MMETSP1061-20121228|3900_1 52 FRNDRDIVLV 61
                678******9 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.18
   TIGR03917 33 DvDlvL 38
                D+D+v+
  MMETSP1061-20121228|3900_1 78 DRDVVM 83
                99***8 PP

  == domain 4    score: -3.7 bits;  conditional E-value: 0.71
   TIGR03917  33 DvDlvL 38 
                 D Dlv+
  MMETSP1061-20121228|3900_1 103 DKDLVM 108
                 678998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 628.27
//
Query:       MMETSP1061-20121228|3895_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 2499.54
//
Query:       MMETSP1061-20121228|3903_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.19s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 2094.46
//
Query:       MMETSP1061-20121228|3893_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.35
# Mc/sec: 1153.96
//
Query:       MMETSP1061-20121228|3904_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 2171.82
//
Query:       MMETSP1061-20121228|3907_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.10s 00:00:00.18 Elapsed: 00:00:00.18
# Mc/sec: 322.64
//
Query:       MMETSP1061-20121228|3909_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19    9.9   8.7        1.3    7.3   0.3    3.0  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   1.6    0.0015       6.3      20      46 ..      55      81 ..      51      94 .. 0.55
   2 ?    7.3   0.3   0.00032       1.3      18      33 ..     203     218 ..     201     240 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0015
   TIGR02811 20 vgaaagavaaatgrvasasaaaepsep 46
                ++aa++  +++t+++  a++ +  s+ 
  MMETSP1061-20121228|3909_1 55 TAAAIATTTTTTTTTTTAKPSSGGSSS 81
                566666666666666666655544443 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00032
   TIGR02811  18 lavgaaagavaaatgr 33 
                 +av+aaa+a+aa+ + 
  MMETSP1061-20121228|3909_1 203 VAVAAAAAAAAAGLPS 218
                 5677777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.34
# Mc/sec: 1083.09
//
Query:       MMETSP1061-20121228|3912_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|3913_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1061-20121228|3916_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.45
# Mc/sec: 243.45
//
Query:       MMETSP1061-20121228|3910_1  [L=673]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-122  408.0   0.0   2.1e-122  407.6   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
    1.4e-69  232.8   0.0    7.4e-69  230.4   0.0    1.6  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    4.4e-30  102.9   0.3    8.4e-30  102.0   0.1    1.4  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.3e-29  100.5   0.0    3.7e-29   99.8   0.0    1.3  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      2e-27   94.1   0.3    2.4e-26   90.5   0.0    2.5  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    6.9e-27   92.1   0.0    1.5e-26   91.0   0.0    1.5  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    7.2e-27   91.9   0.1      1e-26   91.4   0.1    1.2  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.3e-26   89.6   0.0    8.3e-26   88.7   0.0    1.4  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.8e-25   87.4   0.1    2.5e-25   86.9   0.0    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.9e-25   87.6   0.1    4.2e-25   86.4   0.0    1.6  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.9e-25   86.9   0.0    4.8e-25   86.1   0.0    1.3  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    4.4e-25   86.4   0.2    1.2e-24   85.0   0.0    1.7  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.1e-24   85.0   0.0    1.6e-24   84.4   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.9e-24   84.4   0.1    2.9e-24   83.8   0.1    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
      4e-24   83.1   0.0    6.3e-24   82.4   0.0    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.7e-23   81.2   0.3    9.4e-22   75.5   0.0    2.2  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    4.6e-23   79.7   0.0    8.7e-23   78.8   0.0    1.4  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    5.5e-23   79.3   0.1    1.1e-22   78.3   0.1    1.5  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    8.3e-23   78.9   0.1    1.5e-22   78.0   0.0    1.3  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.2e-22   76.9   0.1    3.3e-22   76.4   0.0    1.2  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    7.7e-22   75.7   0.0    1.6e-21   74.7   0.0    1.5  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.1e-21   75.2   0.1      2e-21   74.3   0.1    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    2.3e-21   74.4   0.1    4.9e-21   73.3   0.0    1.5  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    4.6e-21   73.2   0.0    7.8e-21   72.5   0.0    1.4  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    7.9e-21   72.4   0.0    1.3e-20   71.7   0.0    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.1e-20   70.7   0.2    3.1e-20   70.2   0.1    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    8.3e-20   69.3   0.1    1.6e-19   68.4   0.0    1.4  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.2e-19   68.7   0.0    2.2e-19   67.8   0.0    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.4e-19   66.3   0.0    5.1e-19   65.8   0.0    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
      9e-19   65.8   0.0    1.5e-18   65.1   0.0    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    9.7e-19   64.9   0.0    1.7e-18   64.1   0.0    1.3  1  TIGR00958 3a01208: antigen peptide transporter 2
    2.1e-18   64.0   0.7    3.7e-18   63.2   0.1    1.6  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    5.4e-18   63.2   0.0    9.6e-18   62.4   0.0    1.3  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.1e-17   61.2   0.2    6.3e-17   59.6   0.1    1.7  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.1e-17   61.4   0.0    5.1e-17   60.1   0.0    1.6  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.4e-17   60.7   0.0    3.6e-17   60.1   0.0    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    6.4e-17   59.8   0.0    1.3e-16   58.7   0.0    1.5  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    3.6e-16   57.0   0.7    5.6e-15   53.1   0.5    2.2  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    7.7e-16   55.8   0.0    1.9e-15   54.5   0.0    1.6  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    8.4e-16   55.4   0.4    3.3e-12   43.5   0.0    2.6  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.5e-15   54.4   0.0      1e-07   28.6   0.0    2.2  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
      2e-15   54.2   0.2    4.8e-13   46.4   0.1    2.1  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.8e-15   54.1   0.0    4.9e-15   53.4   0.0    1.3  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    4.3e-15   53.1   0.9    2.2e-10   37.5   0.1    2.1  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.3e-14   52.1   0.3    1.2e-13   48.9   0.2    2.1  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.5e-14   52.0   0.4    3.4e-14   50.8   0.3    1.5  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      2e-14   50.6   0.4    1.7e-13   47.6   0.3    2.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    7.5e-14   49.3   0.4    2.8e-13   47.4   0.3    1.8  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    5.6e-13   46.2   0.0    8.5e-13   45.6   0.0    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.2e-11   42.4   1.0    5.2e-11   40.3   0.1    2.2  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.7e-11   40.5   0.0    7.9e-11   39.0   0.0    1.7  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      2e-10   36.0   0.0    2.8e-10   35.6   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    3.8e-09   33.1   0.1      7e-08   28.9   0.0    2.0  2  TIGR00630 uvra: excinuclease ABC subunit A
    1.8e-07   26.8   0.1    2.4e-07   26.4   0.0    1.1  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.2e-05   21.8   0.0    1.8e-05   21.2   0.0    1.3  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    4.6e-05   20.0   0.0    9.3e-05   19.0   0.0    1.4  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    5.4e-05   18.6   0.0    8.7e-05   17.9   0.0    1.2  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    7.3e-05   20.4   0.0    0.00014   19.5   0.0    1.5  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
     0.0093   13.5   0.1      0.021   12.3   0.1    1.6  1  TIGR00017 cmk: cytidylate kinase
  ------ inclusion threshold ------
       0.02   12.4   0.1      0.041   11.3   0.1    1.5  1  TIGR03263 guanyl_kin: guanylate kinase
      0.044    9.5   0.1          1    4.9   0.0    2.1  2  TIGR00618 sbcc: exonuclease SbcC


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.6   0.0  3.1e-124  2.1e-122      34     606 ..      95     662 ..      69     672 .. 0.90

  Alignments for each domain:
  == domain 1    score: 407.6 bits;  conditional E-value: 3.1e-124
   TIGR00955  34 kk..pekellk.nvsGvaksGellAvlGsSGaGKtTLlnalafr..sekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseeesretiekicdaeaksklsreveentnlasgkekklvkdseneekikykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylgqeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeielleantteecpssgeeiLeelsfeaadlaldllilvvlilvfrllay 606
                 kk  +++ +l+ ++ G a +G +lA++G+SGaGK+  + ala +  ++  l+ +g++ +nG  ++    +   a+v+q+  f+p++tvre+L f  +l+l   ++kk + erv+e+l+e++L+k+adt +g + +v+g+SgGer+Rla+a+el+++P++Lf+DEPTsGLDs+ aas++ +Lk+la+ g+t++ +iHQPs ++f+ fd ++l++eG+ +y G++++  ++++++  + P+++  a+++l+ ++ +    e+  + ++  +++ a+  ++++++  ++l+s   k++vk+    ++i+ +a  ++qf +ll Rsl + +r+ ++l ++++q i ++v+ g+iy+  +++q+ ++++ g l l++     +++++++  f++e  ++  E  +++Y +  Y+++k l+e+Pl+ ++  +f + v  ++gl++++ k   +l lv+l  ++++s gl+++++  s++ al++ p+++++ ++f G  ++ ++ P +++wl  + ++++++E++ +n+++  + ++  +    +++ ++g e L ++ + ++ l + + + ++++    +++y
  MMETSP1061-20121228|3910_1  95 KKgqKNRIILNgSIHGRASPGRMLAIMGPSGAGKSSVMHALAGKvkESPKLRLQGSRFINGYSIT-GDSQVPAAFVKQEFNFFPHMTVRETLAFRVELKLGSLISKKAQAERVQELLQEMSLEKAADTTVG-DAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQPSQHVFSSFDDLLLVSEGKQMYFGETSKVRDYMNRHVSRAPDEMGTAEHILDCISGNAMPGESA-KDVSSRMNKLASLAANQNIDLGQKLSS---KSVVKTYRGDSNIR-RANIFVQFKLLLRRSLRENFRSKASLIIKFVQQISLGVIYGTIYS-LGNDQSSIMDRFGLLSLIAIGGSNMAMASTVRSFPKEKAIVSGELGDHMYGTLPYFIGKALSEIPLTAFFNSIFGVLVSSLTGLNNTFEKMKRFLGLVSLHGLAGQSAGLMIGAVAPSQDAALALFPAILVLNIIFDGKNISEENTPKFLRWLPKVGLIKWGFEGMSLNEFEGLTFTT--SGPRRGPVAKNGDEALARFGLGTNSLSTVVQAQALIVAGSWFMSY 662
                 333333445552699***************************871145678899***********.6778999**********************************************************.5569********************************************************************************************************************988777666.566666666666666666666666444...68899999889999.99******************************************7.789*************************************************************************************************************************************************************************998844..778888999999999999999988885555544444444444444 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.4   0.0   1.1e-70   7.4e-69     760    1286 ..      87     600 ..      13     606 .. 0.84

  Alignments for each domain:
  == domain 1    score: 230.4 bits;  conditional E-value: 1.1e-70
   TIGR00956  760 fewrdltyevkikke.krvlLd.evdGwvkPGkltALmGasGAGkttLlnvLaeRvttG..vitegdrlvngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevig.aaagakanqDyfevwrnsseykavkeeldeleeelskkedkkese.kkkkyaasllkqfklvlirlfqqyWRtpdyllskllltivaalfiGftffkagkslqglqnqllavfmavv.lvatliqqllpkfvaqrdlyevRerpsktfswlafilaqivveiPynlvagtlafliiyypvglyanaskadsveergvlfwlllilfflYvstlgllvislseladsAavlasllftlvllFcGvlatksalpkfWifmyrvsPlty 1286
                  f +     e k k++ +r +L+  ++G   PG++ A+mG sGAGk  ++ +La++v+    +  +g r++ng ++    q    +v+q+    +++tvre+L f   l+  + +skk + e v+e+++ + le+ ad  vG +   G++   R+rl+i+ eLv +P ++lFlDePtsGLDs +a+s++  l++lad+Gq+i+  iHqPs  ++  FD LLl+  G k +YfG+      ++ +Y ++h +++ p+e   Ae++L+ i+  a   +  +D     ++     a+++ + +l ++ls k+  k+   + +   a ++ qfkl l r + +++R+   l+ k++ +i+ +++ G + +  g+    + +++  +  + +  ++ ++ +++ +f +++ ++   e   +++  l++ +++ ++eiP + ++  ++ + +    gl ++ +k       +  f+ l+ l  l   + gl++ ++++ +d A  l  +++ l ++F G  +++++ pkf  ++ +v  + +
  MMETSP1061-20121228|3910_1   87 FRM---ELEAKKKGQkNRIILNgSIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVKESpkLRLQGSRFINGYSITGDSQVPAAFVKQEFNFFPHMTVRETLAFRVELKLGSLISKKAQAERVQELLQEMSLEKAADTTVGDAKVrGISGGERRRLAIACELVSNP-SILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQPSQHVFSSFDDLLLVSEG-KQMYFGET----SKVRDYMNRH-VSRAPDEMGTAEHILDCISgNAMPGESAKDVSSRMNKLASLAANQN-I-DLGQKLSSKSVVKTYRgDSNIRRANIFVQFKLLLRRSLRENFRSKASLIIKFVQQISLGVIYGTI-YSLGNDQSSIMDRFGLLSLIAIgGSNMAMASTVRSFPKEKAIV-SGELGDHMYGTLPYFIGKALSEIPLTAFFNSIFGVLVSSLTGLNNTFEK-------MKRFLGLVSLHGLAGQSAGLMIGAVAPSQDAALALFPAILVLNIIFDGKNISEENTPKFLRWLPKVGLIKW 600 
                  333...3555555541566777469******************************9875334557*****************************************************************************9988********************.9******************************************************998.999***85....5788999999.7899************885256667888999999888777766655.4.567777777766665536666678899************************************76.6788888888888766554444156777888888887777665.689****************************999999999999888888.......4456677778889999**********************************************988766655 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.1   1.3e-31   8.4e-30     339     518 ..     106     291 ..      52     302 .. 0.83

  Alignments for each domain:
  == domain 1    score: 102.0 bits;  conditional E-value: 1.3e-31
   TIGR02857 339 kevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkq..iawvpQkPllfe.gtvaenirlarkdaseaevkealeragldelvka..lpqgleteiGer.gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrla 518
                  ++  +++pg+++a++G+SGaGKs+++++l+g v+ ++ +++++g+   +  + +  +q   a+v+Q+  +f+  tv+e ++++ +    + +++ +++  ++el+++  l++  +t +G++  +g+SgG+r+Rla+A  l+++ ++l lDEPt+ LD++++a +++al++la +g+t++ v H+++
  MMETSP1061-20121228|3910_1 106 GSIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVK-ESPKLRLQGSRFINGYSITGDSQvpAAFVKQEFNFFPhMTVRETLAFRVELKLGSLISKKAQAERVQELLQEmsLEKAADTTVGDAkVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLAdTGQTIVAVIHQPS 291
                 45556789**************************7.99999998887766655555555237*****987765279*********9999999************99963368999****9852689***********************************************899********975 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   5.5e-31   3.7e-29      19     220 ..     115     327 ..     107     391 .. 0.80

  Alignments for each domain:
  == domain 1    score: 99.8 bits;  conditional E-value: 5.5e-31
   TIGR01188  19 gevfglLGPnGAGKtttikmLttllkPd.....sGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgely.g..lpkkeaeeraeellelvelkeaadk.....kvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthy.leeadkladrvaiidkGkiiaedtpeeLKervgkevv 220
                 g +++++GP GAGK+ +++ L++ +k +     +G+ +++Gy ++ +++      + v q+ +   ++t re l +  el  g  ++kk++ er++ell+ ++l +aad      kv+  sgG rrrl +a+ l+++P++lfLDEPt+GLD+++++++   +++l ++g+ti+   h+  + + +  d + ++++Gk + ++ + ++++ ++ +v 
  MMETSP1061-20121228|3910_1 115 GRMLAIMGPSGAGKSSVMHALAGKVKESpklrlQGSRFINGYSITGDSQV---PAAFVKQEFNFFPHMTVRETLAFRVELKlGslISKKAQAERVQELLQEMSLEKAADTtvgdaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQpSQHVFSSFDDLLLVSEGKQMYFGETSKVRDYMNRHVS 327
                 8899*******************99865446668***********98763...346677777777777777777777776422337999*****************99762222267889***************************************************998777625667788899999999999999999888876666553 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0   3.5e-28   2.4e-26      24     220 ..     113     320 ..      93     328 .. 0.80
   2 ?   -1.1   0.0       3.6   2.4e+02      93     138 ..     400     445 ..     394     452 .. 0.86
   3 ?   -0.6   0.0       2.6   1.7e+02      88     158 ..     506     575 ..     501     593 .. 0.71

  Alignments for each domain:
  == domain 1    score: 90.5 bits;  conditional E-value: 3.5e-28
   TIGR00968  24 ktGslvallGpsGsGkstllrviaGlekpd.....sGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir...kkdkakikakveellelvqleklgdr.....ypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqe.ealevadrivvlekGkieqvgsaeevyd 220
                   G++ a++GpsG+Gks+++ ++aG  k+      +G  +++G  +t     +    fv q++  f+h+tvr+ +af +e++    ++k++  ++v+ell+ + lek +d          +sGG+r+r+a+a  l  +p +l+ldep + ld+     l a l++l d    t v v h+ +       d++ ++++Gk    g +++v d
  MMETSP1061-20121228|3910_1 113 SPGRMLAIMGPSGAGKSSVMHALAGKVKESpklrlQGSRFINGYSITGD--SQVPAAFVKQEFNFFPHMTVRETLAFRVELKlgsLISKKAQAERVQELLQEMSLEKAADTtvgdaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTG-QTIVAVIHQPSqHVFSSFDDLLLVSEGKQMYFGETSKVRD 320
                 579**********************754321122245555555555543..334568************************9666567778889***********9876551111156779*********************************************9875.5778888876515678889999999999888888777755 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 3.6
   TIGR00968  93 iafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqr 138
                 + f l +r+  +++ + k + ++++vq   lg  y +  s G+ q 
  MMETSP1061-20121228|3910_1 400 VQFKLLLRRSLRENFRSKASLIIKFVQQISLGVIYGTIYSLGNDQS 445
                 678999999999*******************999999999888876 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 2.6
   TIGR00968  88 tvrdniafGleirkkdk.akikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepf 158
                 t + n  fG+ +   +  +++ +k++++l lv l++l+ +    + G      +   ala+ p +l+l+  f
  MMETSP1061-20121228|3910_1 506 TAFFNSIFGVLVSSLTGlNNTFEKMKRFLGLVSLHGLAGQSAGLMIGAVAP--SQDAALALFPAILVLNIIF 575
                 666677788888766541456789999999999999998776666665432..2345778888888887655 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   2.3e-28   1.5e-26       6     195 ..      96     291 ..      91     302 .. 0.83

  Alignments for each domain:
  == domain 1    score: 91.0 bits;  conditional E-value: 2.3e-28
   TIGR03608   6 kkfkdkeilk.klslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenle..lalkl.kkkskkekekkkkevlekvglekklkk.....kiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpe 195
                 k  k++ il+ +++ + + G+++ai+G sG+GKs ++  l+   k +s k+ l+g++   ++  + +   +   +++ q+f+   + tv+e l   + lkl + +skk + ++++e+l+++ lek  ++     k+  +sgGe+ R+a+a  l+ ++++++ DEPt+ LD+   + +++ lk+l+++g+ti+ v H+p+
  MMETSP1061-20121228|3910_1  96 KGQKNRIILNgSIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVK-ESPKLRLQGSR--FINGYSITGDSQVPAAFVKQEFNFFPHMTVRETLAfrVELKLgSLISKKAQAERVQELLQEMSLEKAADTtvgdaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQPS 291
                 4456677776346778999*******************9998655.45899999999..678888888888999*****************9971145554235678899999**********887764222227889**********************************************************874 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.1   1.5e-28     1e-26     326     541 ..      96     319 ..      49     322 .. 0.82

  Alignments for each domain:
  == domain 1    score: 91.4 bits;  conditional E-value: 1.5e-28
   TIGR01842 326 ppeekkktlkg.isfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksi..GYlPqdveLfeG.tvaeniaRfeenadaekvieaaklagvhelil..rlpkGYdteigegG.aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrps..llelvdkilvlkdGalkafGereevl 541
                 + ++++ +l+g i+ + ++G +lai+Gpsg+Gkss+++ l G ++ +s ++rl g  + +    t   ++   ++ q+ + f+  tv e +a   e      + + a++  v el++  +l+k  dt++g++   ++sgG r R+a+a  l  +P ++ LDeP + LD++  + l++alk+l   + t+v + h+ps  + ++ d +l++++G++  fGe ++v 
  MMETSP1061-20121228|3910_1  96 KGQKNRIILNGsIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVK-ESPKLRLQGSRFINGYSITGDSQVpaAFVKQEFNFFPHmTVRETLAFRVELKLGSLISKKAQAERVQELLQemSLEKAADTTVGDAKvRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQPSqhVFSSFDDLLLVSEGKQMYFGETSKVR 319
                 44555566664488899*************************876.5689****99876654444444443379********8538999988444434455666889999*****9733689********975278***********************************************************9755899******************99985 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   1.2e-27   8.3e-26      27     230 ..     115     318 ..      98     329 .. 0.87

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 1.2e-27
   TIGR00972  27 nkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayg..lrlkgikdkkeldeiveesLkkaalwdevkdklkk.salsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthnmqqaarvs.dktaffleGelveegeteqi 230
                  ++ a++GpsG+Gks+++++l    +  +++r++G+ +++g +i+ ++            v q++n fp m++ + +a+   l+l  + +kk+  e+v+e L++ +l ++  + + + +  ++sGG ++rl+ia  l  +P +l lDePts LD++a++++ + +++L+++  tiv v h+ +q    s d   ++ eG+ +  get+++
  MMETSP1061-20121228|3910_1 115 GRMLAIMGPSGAGKSSVMHALAGKVKESPKLRLQGSRFINGYSITGDSQVP------AAFVKQEFNFFPhMTVRETLAFRveLKLGSLISKKAQAERVQELLQEMSLEKAADTTVGDaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTgQTIVAVIHQPSQHVFSSfDDLLLVSEGKQMYFGETSKV 318
                 56789*****************999999****************9984433......45789*******9*********83355667999*****************999988886515678***********************************************9889*******988766544488888899999988888876 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.0   3.7e-27   2.5e-25     350     530 .]     104     290 ..      59     290 .. 0.80

  Alignments for each domain:
  == domain 1    score: 86.9 bits;  conditional E-value: 3.7e-27
   TIGR02868 350 vlkgvsldlepGervavvGasGaGKstLlallaglldpl......kGevtldgvsvaslsesevrrvvsvlaqdaHlF.dttvreNlrlarpdatdeellaaLervgLadwlra..LpdGldtklge.ggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthrl 530
                     ++  ++pG+ +a++G+sGaGKs ++++lag ++ +      +G+  ++g+s++     + +  +++++q+   F + tvre l +  +   +  +++  ++ + +++l++  L++ +dt +g+ + + +SGGer+Rla+A  L+++  +l LDEPt +LD +++++l+++L   a++g+t+v v h++
  MMETSP1061-20121228|3910_1 104 LNGSIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVK-EspklrlQGSRFINGYSITG----DSQVPAAFVKQEFNFFpHMTVRETLAFRVELKLGSLISKKAQAERVQELLQEmsLEKAADTTVGDaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKnLADTGQTIVAVIHQP 290
                 334688899*************************998.50112225555555555544....2334678999999999678********99999999999999999999999987789*******9725677*******************************************9789***********85 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.4   0.0   6.2e-27   4.2e-25      24     208 ..     115     310 ..     106     315 .. 0.82

  Alignments for each domain:
  == domain 1    score: 86.4 bits;  conditional E-value: 6.2e-27
   TIGR01277  24 GervailGesGaGkstllnliaGfle..p...asGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlk...pglklnavqkekvedvarqvGiadylerlpee.....lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsd.aaaiasqvvvvedGkik 208
                 G  +ai+G+sGaGks+++  +aG ++  p    +G+  +n+ + t+   ++ p + + qe n+f+h+tvr+ +++ ++    +l  +  q e+v+++ +++ +++  +   ++     +sGG+r+r+a+a  lv +  il+ldep s ld +    ++a +k+lad   +t++ v h++s+ + ++ +  ++v++Gk  
  MMETSP1061-20121228|3910_1 115 GRMLAIMGPSGAGKSSVMHALAGKVKesPklrLQGSRFINGYSITG--DSQVPAAFVKQEFNFFPHMTVRETLAFRVElklGSLISKKAQAERVQELLQEMSLEKAADTTVGDakvrgISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTG-QTIVAVIHQPSQhVFSSFDDLLLVSEGKQM 310
                 8899*******************87522333358999999988876..5799********************998776112234445678899**********9988776543233339*********************************************9876.58999999998725688999*******965 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.1   0.0   7.1e-27   4.8e-25       1     188 [.     120     318 ..     120     346 .. 0.80

  Alignments for each domain:
  == domain 1    score: 86.1 bits;  conditional E-value: 7.1e-27
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvte....vpaekrsvnvvfqsyaLfPhmtveenvafg..Lkmrk.vpkaeikervkeaLelvqleefa.....krkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeeal.tmsdriavlrkGkiaqigepeei 188
                 ++GpsG+Gk+ ++  laG  + +s k+ l+g   ++        +     v q++ +fPhmtv e +af   Lk+   + k+  +erv+e+L+ + le+ a     + k+  +sGG r+r+a+a  +v +P iL+lDep s LD      +   lk+l +  G t+v v h  +  + +  d + ++++Gk +  ge+ ++
  MMETSP1061-20121228|3910_1 120 IMGPSGAGKSSVMHALAGKVK-ESPKLRLQGSRFINgysiTGDSQVPAAFVKQEFNFFPHMTVRETLAFRveLKLGSlISKKAQAERVQELLQEMSLEKAAdttvgDAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLAD-TGQTIVAVIHQPSQHVfSSFDDLLLVSEGKQMYFGETSKV 318
                 69****************765.455677766666652211123455667888*****************7225554426788999************976511111678999*********************************************975.7*********977655155588999999998877776665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   1.8e-26   1.2e-24      24     197 ..     111     290 ..      92     301 .. 0.82

  Alignments for each domain:
  == domain 1    score: 85.0 bits;  conditional E-value: 1.8e-26
   TIGR02673  24 kiekgeflfltGasGaGkttllklllgaekpsrGevevagedvar....lrerelpllRrkigvvfqDfkllkdrtvlenvalalevrg...kkeeeiqkrveevlelvgledkakal.....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathde 197
                 + ++g +l ++G+sGaGk+++++ l g+ k  + +++++g+ + +      ++++p      + v q+f++++++tv e +a+ +e++     ++++  +rv+e+l+ + le+ a+++      + +sgGe+ R aia  +v++P++l  DePt  lD++ ++++++ lk+l ++G t++ + h+ 
  MMETSP1061-20121228|3910_1 111 RASPGRMLAIMGPSGAGKSSVMHALAGKVKE-SPKLRLQGSRFINgysiTGDSQVP-----AAFVKQEFNFFPHMTVRETLAFRVELKLgslISKKAQAERVQELLQEMSLEKAADTTvgdakVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQP 290
                 56799*******************9987654.567777777765411102344444.....57899*****************99886422257888899************999876222114679*********************************************************85 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.0   2.4e-26   1.6e-24      30     230 ..     111     321 ..      83     362 .. 0.81

  Alignments for each domain:
  == domain 1    score: 84.4 bits;  conditional E-value: 2.4e-26
   TIGR03258  30 eieaGellallGksGsGkttllravaGfvkadG.....GrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrar...kqskaliaervadalklvqlsdaaarl.....paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrde.alvladkillmkeGslialGetralyda 230
                    +G +la++G+sG+Gk++++ a+aG vk +      G   + +  +t     +   a++ q++ +fph++v e +af +  +     sk   aerv + l+ + l  aa           +sGG ++r+a+a  lv +p +l+ldep s ld+   as+   lk+l +     t++ v h+ ++  +   d +ll+ eG+ + +Get ++ d 
  MMETSP1061-20121228|3910_1 111 RASPGRMLAIMGPSGAGKSSVMHALAGKVKESPklrlqGSRFINGYSITGD--SQVPAAFVKQEFNFFPHMTVRETLAFRVELKlgsLISKKAQAERVQELLQEMSLEKAADTTvgdakVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADT--GQTIVAVIHQPSQhVFSSFDDLLLVSEGKQMYFGETSKVRDY 321
                 5689**************************987666667778888888864..466789********************9876522246788899********99998877654111115679********************************************9986..679******9765156778*****************998765 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.1   4.3e-26   2.9e-24      21     221 ..     114     320 ..     100     338 .. 0.83

  Alignments for each domain:
  == domain 1    score: 83.8 bits;  conditional E-value: 4.3e-26
   TIGR02142  21 pgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkrarae..erriseekvielLg...iehLleR.....lpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsl.devarladrvvvledGrvkaagkleevla 221
                 pg  + a+ G sG+Gk+s+++++aG ++ ++ ++ l+g  + ++    i+   +   ++v qe + FpH++vre L + ++   ++  +++++ e+v elL    +e+  +      +++ +sGGe+ R ai+  l+s+P +L +DeP + LD++  + ++  L++l++  +  i+ v H+  + v    d ++++ +G+   +g+  +v  
  MMETSP1061-20121228|3910_1 114 PG-RMLAIMGPSGAGKSSVMHALAGKVK-ESPKLRLQGSRFINGYS--ITGDSQVPAAFVKQEFNFFPHMTVRETLAFRVELKLGSliSKKAQAERVQELLQemsLEKAADTtvgdaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQT-IVAVIHQPsQHVFSSFDDLLLVSEGKQMYFGETSKVRD 320
                 55.689*******************987.5689***********99..888999999********************998766655226789999999998622255544441111156679*********************************************987775.6666666527899999**********999998888765 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.4   0.0   9.4e-26   6.3e-24      13     224 ..     100     318 ..      88     325 .. 0.82

  Alignments for each domain:
  == domain 1    score: 82.4 bits;  conditional E-value: 9.4e-26
   TIGR03873  13 grlivdd.vdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagad.lkalsrrar.arrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrd.....lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdln.laasvcdhvvvldgGrvvaaGppaev 224
                 +r+i+++ +   a +G + +++GP G+Gks +++ laG ++ +  ++ l+g+  ++++s      +  a v+q+ +  + ++vr+ +a+ r+  +     + ++ ae v+++l +++l++ ad +     +  +sGGer+r  +a  l  +P++l+ldePt  ld +a  +l+a++++la++g t+v+ +h  + +  s  d+++++++G+ +  G++++v
  MMETSP1061-20121228|3910_1 100 NRIILNGsIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVK-ESPKLRLQGSRfINGYSITGDsQVPAAFVKQEFNFFPHMTVRETLAF-RVELKLGSLISKKAQAERVQELLQEMSLEKAADTTvgdakVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQPSqHVFSSFDDLLLVSEGKQMYFGETSKV 318
                 56666653677899************************997.5678888888756777765440456799****************998.5554433334445688899999999999998876511111678**********************************************************9752677899*********99988888776 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.5   0.0   1.4e-23   9.4e-22      14     202 ..      97     290 ..      93     308 .. 0.84
   2 ?    3.5   0.0      0.15        10      90     117 ..     359     386 ..     355     405 .. 0.82

  Alignments for each domain:
  == domain 1    score: 75.5 bits;  conditional E-value: 1.4e-23
   TIGR02982  14 gelrkqvlf.dinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgke.lkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkek..lsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdn 202
                 g++++ +l+ +i+ + +pg ++ + GpsG+Gk  ++  ++g +   + +l++ g++ ++g s +   qv     ++ q++n++  +t+++ + + +elk    +s+k+++++++ell+++ le+       d k + +sgG ++r+aia  lv++P++++ dePt+ ld++++ +++  l++la + g ti+ v h +
  MMETSP1061-20121228|3910_1  97 GQKNRIILNgSIHGRASPGRMLAIMGPSGAGKSSVMHALAG-KVKESPKLRLQGSRfINGYSITGDSQVP--AAFVKQEFNFFPHMTVRETLAFRVELKLGslISKKAQAERVQELLQEMSLEKaadttVGDAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLA-DTGQTIVAVIHQP 290
                 56666666524778899****************99987776.4456789999999867888888888885..689***************99888777754338999999*************95555444678899**********************************************9.6799999999974 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.15
   TIGR02982  90 ahnllesltaeqnvrmalelkeklsake 117
                 + n l sl+a+qn+ ++++l++k   k+
  MMETSP1061-20121228|3910_1 359 RMNKLASLAANQNIDLGQKLSSKSVVKT 386
                 67999***************99865554 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   1.3e-24   8.7e-23      24     222 ..     112     321 ..      98     329 .. 0.82

  Alignments for each domain:
  == domain 1    score: 78.8 bits;  conditional E-value: 1.3e-24
   TIGR03864  24 vakgefvaLLGpnGaGkstLfslltrLyeak.....egeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLh.G..lsraeaeerieealarlglaerae.....ekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathl.vdev.eaedrlvvlhkGkvlaqGaaaelaae 222
                  ++g++ a++Gp GaGks ++  l++ ++++     +g+  ++G++++ +++        v q+  +   ++v++ l +  +L+ G  +s+++ +er++e+l++++l++ a+     +kvr ++GG+rrr+ ia  l+ +P++L lDe+t GLD ++ a+l++++++l+ ++g +++   h   + v ++ d+l+++ +Gk +  G +++++  
  MMETSP1061-20121228|3910_1 112 ASPGRMLAIMGPSGAGKSSVMHALAGKVKESpklrlQGSRFINGYSITGDSQVP---AAFVKQEFNFFPHMTVRETLAFRVELKlGslISKKAQAERVQELLQEMSLEKAADttvgdAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLA-DTGQTIVAVIHQpSQHVfSSFDDLLLVSEGKQMYFGETSKVRDY 321
                 5789******************99998877666777777778888887665543...346889999999***********9997534478888889***********9987522222689************************************************9.55656666666513344267799********9999999998765 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.1   1.6e-24   1.1e-22      14     185 ..     111     288 ..      95     291 .. 0.82

  Alignments for each domain:
  == domain 1    score: 78.3 bits;  conditional E-value: 1.6e-24
   TIGR01166  14 avergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlf.aadvdedvafgp.lnlG..lseaeverrvrealaavdisgleer.....pthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                 +++ g++la++G+ GaGks +++ l+G ++ +s k+ l+G+    + +  ++   +v   +   +  +f   +v e +af   l lG  +s++   +rv+e l+ +++++ ++       ++ +sgGe++r+aia  ++ +p +l+ldePt+gld++ a  l+++l++l + G+t+v   h
  MMETSP1061-20121228|3910_1 111 RASPGRMLAIMGPSGAGKSSVMHALAGKVK-ESPKLRLQGSRFINGYS--ITGDSQVPAAFVKQEFNFFpHMTVRETLAFRVeLKLGslISKKAQAERVQELLQEMSLEKAADTtvgdaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIH 288
                 567899***********************9.6889*****98755444..33345566666666666663679*******75389995336777789**********9988765111115688******************************************************9887 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.0   2.3e-24   1.5e-22      21     220 ..     110     319 ..      93     327 .. 0.83

  Alignments for each domain:
  == domain 1    score: 78.0 bits;  conditional E-value: 2.3e-24
   TIGR03410  21 levekgevvavlGrngvGkttllkalvgllkvksGeieleged.itklkpeervkaGiayvpqGreifpkltveenlelglealkkk...ekkipeeiyelFP..vlkemlkRrgGd.....LsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeld 220
                  +++ g+++a++G  g+Gk+++++al g +k+ s +++l+g+  i+  + +   +   a+v q  + fp++tv+e l   +e +  +   +k+  e++ el     l++  +   Gd     +sGG +  laia  Lv++P +l LDePt G+     + + +++k+la++++  + ++ q  + + +  d +l++++G+ +  ge+++++
  MMETSP1061-20121228|3910_1 110 GRASPGRMLAIMGPSGAGKSSVMHALAGKVKE-SPKLRLQGSRfINGYSITGDSQVPAAFVKQEFNFFPHMTVRETLAFRVELKLGSlisKKAQAERVQELLQemSLEKAADTTVGDakvrgISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQPSQHVFSSFDDLLLVSEGKQMYFGETSKVR 319
                 467889**********************9986.5689999877366777788899999*****************998887776655454444455555555411355666666665555558************************************************999999***********************99999888765 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   4.9e-24   3.3e-22     490     689 ..     112     319 ..      94     325 .. 0.85

  Alignments for each domain:
  == domain 1    score: 76.4 bits;  conditional E-value: 4.9e-24
   TIGR03375 490 ikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpa..dlrrnigyvpqdvtLf.yGtlrdNialgapaaedeellraaelaGvtefvkkhp..kGldlqige.rGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrts..lLelvdriivldkGrivadGpkdevl 689
                  +pG  +ai+G  G+GKs++++ l+g ++ +  ++ l g    +      d +   ++v+q+ + f + t+r+ +a++ +    + + + a++  v+e++++ +  k  d+++g+ + +++SgG r+ +a+a  l+++p+il+LDEPts lD+++ ++l+ +Lk+l+  ++T+v v H+ s  + +  d ++++++G+ +  G  ++v 
  MMETSP1061-20121228|3910_1 112 ASPGRMLAIMGPSGAGKSSVMHALAGKVKES-PKLRLQGSRFINGYSItgDSQVPAAFVKQEFNFFpHMTVRETLAFRVELKLGSLISKKAQAERVQELLQEMSleKAADTTVGDaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADtGQTIVAVIHQPSqhVFSSFDDLLLVSEGKQMYFGETSKVR 319
                 579***********************99864.455555554333222201455566899***9999678*******************************98643399*****9835689***********************************************99*********9643399999*********999999888885 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   2.3e-23   1.6e-21      24     241 ..     111     326 ..      91     328 .. 0.79

  Alignments for each domain:
  == domain 1    score: 74.7 bits;  conditional E-value: 2.3e-23
   TIGR02315  24 eikkGelvaviGlsGaGkstllrsinrlve.....issgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaak.....radqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvd.lakkyadrivglkageivfdgasselddevleki 241
                   ++G ++a++G+sGaGks +++++ + v+       +gs +++g+++t         ++   +++ qe+n   ++tv e      l+++  lk    + ++++ e+  elL+++ l++ a++     ++  +sGG++ R+aia  l+ +p++++ DEP++ LD +++  ++ +lk+++  +g t++  +Hq +  + +  d ++ + +g+ ++ g++s++ d + +++
  MMETSP1061-20121228|3910_1 111 RASPGRMLAIMGPSGAGKSSVMHALAGKVKespklRLQGSRFINGYSIT-------GDSQVPAAFVKQEFNFFPHMTVRE-----TLAFRVELKLGSLISKKAQAERVQELLQEMSLEKAADTtvgdaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLAD-TGQTIVAVIHQPSqHVFSSFDDLLLVSEGKQMYFGETSKVRDYMNRHV 326
                 6789*********************987761222222344444444444.......45667899************9965.....45566666666667788999999999999999998865222227788**********************************************85.78999999**96414555667788899999999999999999877765 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.1     3e-23     2e-21      14     216 ..      97     306 ..      90     310 .. 0.72

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 3e-23
   TIGR02211  14 gkleievlkg.vsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkel.sklssneraklrnkklGfiyqfhhlladftalenvamPl...liskkskkeakerakellekvglekrinkkpse.....lsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthd..lelakkldrvlelkd 216
                 g+++  +l+g ++ + + g ++ai+G sG+Gks ++h l+g  k  s ++ l+G ++ +  s +  +++      f+ q   +++ +t+ e +a+ +   l s  skk  +er +ell+++ lek ++   ++     +sGGer+r aia  lv++P++++ dePt+ ld+++a ++   l++l  + +t +  v h+  +++   +d +l +++
  MMETSP1061-20121228|3910_1  97 GQKNRIILNGsIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVK-ESPKLRLQGSRFiNGYSITGDSQV---PAAFVKQEFNFFPHMTVRETLAFRVelkLGSLISKKAQAERVQELLQEMSLEKAADTTVGDakvrgISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIV-AVIHQpsQHVFSSFDDLLLVSE 306
                 55555566543677788999********************9655.456778888765144455555554...3467777777777777777777654221334566777788999*********998765543333339********************************************988766644.4444311445566666665555 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   7.3e-23   4.9e-21       3     185 ..     112     303 ..     111     322 .. 0.80

  Alignments for each domain:
  == domain 1    score: 73.3 bits;  conditional E-value: 7.3e-23
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglikva.....kGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGe.....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatc.drvvl 185
                 +++G +l+++Gp GaGk++++ a+ g +k++     +Gs  ++g  s +g +++     + ef +   + v++t+      ++G l  +kka+   v++ l++++l++ ad +vG+     +sGG+r+r+ +a  l  +ps+l+ldep +Gld  +  +l+  +++la+ g++i+ + h+ ++ v ++ d ++l
  MMETSP1061-20121228|3910_1 112 ASPGRMLAIMGPSGAGKSSVMHALAGKVKESpklrlQGSRFINGY-SITGDSQVPAAFVKQEFNFFPHMTVRETLAFRVELKLGSLI-SKKAQAERVQELLQEMSLEKAADTTVGDakvrgISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQPSQHVFSSfDDLLL 303
                 789*************************95422222455555553.44455555444457788875557777776665566899985.78999999******************97555558*********************************************************998877543155554 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   0.0   1.2e-22   7.8e-21      27     195 ..     112     290 ..      84     364 .. 0.80

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 1.2e-22
   TIGR03265  27 vkkgelvclLGPsGCGkttLLriiaGLekqd.....aGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLk...nkklkreevaerveelLelvglsgseekyPgq.....lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdq 195
                  + g +++++GPsG Gk++++ ++aG  k++     +G+ +++g  it  +  +    +v q + +fP +tv+e +a+ ++   ++ ++++ +aerv+elL+ + l+++++   g      +sGG ++r+a+a  l+  P++L+LDeP s LD+   ++L   lk+l    g t + v h+ 
  MMETSP1061-20121228|3910_1 112 ASPGRMLAIMGPSGAGKSSVMHALAGKVKESpklrlQGSRFINGYSITGDS--QVPAAFVKQEFNFFPHMTVRETLAFRVElklGSLISKKAQAERVQELLQEMSLEKAADTTVGDakvrgISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLAD-TGQTIVAVIHQP 290
                 56799*********************8665522222455566666666544..445678******************998722234578999**************9887766543333339********************************************975.577888888864 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7   0.0   1.9e-22   1.3e-20      18     189 ..     114     289 ..     104     318 .. 0.85

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 1.9e-22
   TIGR01186  18 eGeiiviiGlsGsGkstlvrllnrliePt.....aGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglell...kideqerkekalealklvdleeyedry.....PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                  G ++ i+G+sG+Gks++++ l   +  +     +G  +i+G +i+  s++          a+v q++ +fPhmt+ + +++ +el+    i+++ + e+ +e+l+ + le+ +d+         +sGG ++r+ +a  l  +P +l++de+ s ld     +l   l++l ++  +tiv + h 
  MMETSP1061-20121228|3910_1 114 PGRMLAIMGPSGAGKSSVMHALAGKVKESpklrlQGSRFINGYSITGDSQVPA--------AFVKQEFNFFPHMTVRETLAFRVELKlgsLISKKAQAERVQELLQEMSLEKAADTTvgdakVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADT-GQTIVAVIHQ 289
                 5899***************9998766544334447999*******99998887........9*********************999633248899999************9988754111115579*********************************************876.6799999996 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.1   4.6e-22   3.1e-20     360     551 ..     109     308 ..      91     319 .. 0.80

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 4.6e-22
   TIGR02204 360 dltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldp..eelrerlalvpqdsalfaa.svleniryGrpdasdeeveaaakaaeadefisk..lpeGydtllGergvt.LsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkg.rttlviahrLat..vlkadrivvldkGr 551
                 + +  pG+ +a++GPsGaGks +++ l    + +s +++l+G    +      + +   a+v+q+ + f +  v+e +++         + + a+a + +e++++  l++  dt++G+  v+ +sGG ++r+aia  ++ +  iL+Lde ts Ld+ +   +  al++l +  +t + + h+ +     + d ++ + +G+
  MMETSP1061-20121228|3910_1 109 HGRASPGRMLAIMGPSGAGKSSVMHALAGK-VKESPKLRLQGSRFINGYSitGDSQVPAAFVKQEFNFFPHmTVRETLAFRVELKLGSLISKKAQAERVQELLQEmsLEKAADTTVGDAKVRgISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTgQTIVAVIHQPSQhvFSSFDDLLLVSEGK 308
                 55678********************99875.5578899999988776544114566678**********763789999*98888889999*************97336799*******988659********************************************987515555567764421133445555555555 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.4   0.0   2.3e-21   1.6e-19      26     197 ..     112     289 ..      93     308 .. 0.78

  Alignments for each domain:
  == domain 1    score: 68.4 bits;  conditional E-value: 2.3e-21
   TIGR00960  26 iekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqd.ltklr...drevpflrrqiGivfqdfkllsdrtvydnvalalri.iG..vkgreieervsaalekvGlkdkakal.....PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathd 197
                  + G +  ++G+sGaGks++++ + g  k s  k+r++g   ++ ++   d +vp        v q+f+++ + tv + +a+ +++ +G  ++ ++  erv++ l+++ l++ a +         +sgGe++r+aia  +v++P++l+ dePt+ ld+  +  ++  l+++  +G t++   h+
  MMETSP1061-20121228|3910_1 112 ASPGRMLAIMGPSGAGKSSVMHALAGKVKES-PKLRLQGSRfINGYSitgDSQVP-----AAFVKQEFNFFPHMTVRETLAFRVELkLGslISKKAQAERVQELLQEMSLEKAADTTvgdakVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQ 289
                 5789*******************99987765.46666665412222211133444.....46899****************987763342235666789***********9988654111114579****************************************************999996 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   3.3e-21   2.2e-19       9     202 ..     113     318 ..     106     333 .. 0.84

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 3.3e-21
   TIGR01184   9 kkgefislighsgcgkstllnliaglekpt.....sgavilegkeitepg.pdrmvvfqnysllpwltvrenialavdavlrd.lskserreiveehielvglreaadk.....rpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeallls.drvvmltngpaakigeilev 202
                 + g +++++g sg gks+++  +ag  k +     +g+  ++g  it         v q++ ++p +tvre +a+ v+  l + +sk+ + e v+e ++ ++l++aad      ++  +sgg ++r+aia  l   p +l+ldep   ld+ +  +l   l +++ ++  t++ v h+  + ++ s d ++++++g + + ge  +v
  MMETSP1061-20121228|3910_1 113 SPGRMLAIMGPSGAGKSSVMHALAGKVKESpklrlQGSRFINGYSITGDSqVPAAFVKQEFNFFPHMTVRETLAFRVELKLGSlISKKAQAERVQELLQEMSLEKAADTtvgdaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLA-DTGQTIVAVIHQPSQHVFSSfDDLLLVSEGKQMYFGETSKV 318
                 67999********************866443344479999999999865413456789********************877651688999999*************9862221155679***************************************9987776.678899999**999999987799999999999999987766 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.8   0.0   7.5e-21   5.1e-19     503     690 ..     113     310 ..      95     322 .. 0.78

  Alignments for each domain:
  == domain 1    score: 65.8 bits;  conditional E-value: 7.5e-21
   TIGR03796 503 kpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpree.ip.revlanslalvdqdivlf.egtvrdnltlwdetipeedlvrAakDAaihdvilarpggyea..elaeg.ganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaid...enlrrRgctciivaHRLst..iRdcdeiivlerGkvv 690
                 +pG+ +A++G+sG+Gks + + +aG  ++ s ++++ g +  + ++     +   a+v+q+  +f + tvr+ l++  e    + + + a+   +++ +++++ + +a  ++ +   + +sGG+r Rl iA  Lv+nPsiL lDE ts LD+++  ++    +nl   g t++ v H  s       d+++++ +Gk +
  MMETSP1061-20121228|3910_1 113 SPGRMLAIMGPSGAGKSSVMHALAGKVKE-SPKLRLQGSRFINgYSiTGDSQVPAAFVKQEFNFFpHMTVRETLAFRVELKLGSLISKKAQAERVQELLQEMSLEKAAdtTVGDAkVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIaalKNLADTGQTIVAVIHQPSQhvFSSFDDLLLVSEGKQM 310
                 79***********************8876.56889988775431221233455679********9568*******988877788888899999999999888766555005544324679********************************999887612257778999*****999874224566777777777655 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   2.2e-20   1.5e-18      20     212 ..     107     311 ..      91     332 .. 0.81

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 2.2e-20
   TIGR03522  20 evsfeaekGeivGflGPnGaGkstlmkiltgylkad.....sGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaaly...klkgrklkkrveelielvGlkaeqh.....kkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakd.ktvilsthi.mqevealcdrviiinkGkiva 212
                 ++  +a +G+++  +GP GaGks++m  l+g +k +      Gs +++g++++ +s+    +   + +   ++  + vre l+f  +l     ++++++ +rv+el++++ l++ +       k+  +s G r+r  +a  l+ +P++l ldePt+Gld      + + +k++a   +t++   h   q v +  d+++++ +Gk + 
  MMETSP1061-20121228|3910_1 107 SIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVKESpklrlQGSRFINGYSITGDSQVPAAF---VKQEFNFFPHMTVRETLAFRVELKlgsLISKKAQAERVQELLQEMSLEKAADttvgdAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTgQTIVAVIHQpSQHVFSSFDDLLLVSEGKQMY 311
                 4666899*************************99764444469999****999998765554...4555558899**********998633247788899************988751122257788**********************************************97537888888853688888899999999998765 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   2.5e-20   1.7e-18     505     698 ..     113     316 ..     100     326 .. 0.80

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 2.5e-20
   TIGR00958 505 epGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkv..alVgqEPvlf.sgsvreNiaYGltktedeevtaaakaanahdFisel..ekgydtevge.kGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa.eveqllqesksak..srtvlliahrL..stvekadkilvlkkgsvvelGthk 698
                 +pG+  a+ GPsG GKS+v+  l    + ++ ++ l g +  +       ++v  a V+qE   f   +vre +a+ ++ +    +   a+a  +++ ++e+  ek  dt vg+ k   +sgG + r+AiA  Lv +P +L LDe tS LD+ +   l+ + k+ +  ++t++ + h+   ++    d+ l++++g+ +  G+ +
  MMETSP1061-20121228|3910_1 113 SPGRMLAIMGPSGAGKSSVMHALAGKVK-ESPKLRLQGSRFINGYSITGDSQVpaAFVKQEFNFFpHMTVRETLAFRVELKLGSLISKKAQAERVQELLQEMslEKAADTTVGDaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDStAAASLIAALKNLAdtGQTIVAVIHQPsqHVFSSFDDLLLVSEGKQMYFGETS 316
                 69******************99987654.6789999998866555555667774478*****9994569******************************98733678*****98345679*******************************954445555566654116899999998511466777888888888766666555 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.1   5.4e-20   3.7e-18     351     545 ..     107     308 ..      88     320 .. 0.81
   2 ?   -2.7   0.0       4.9   3.3e+02     196     257 ..     373     434 ..     354     458 .. 0.66

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 5.4e-20
   TIGR02203 351 sislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvd.ladlkLa.sLRrqvalvsqdvvLFdd.tiaenvaYgeleevdeaeveealaaaylkdlvdkl..peGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlv.iahRLs..tiekaDrivvlddGk 545
                 si+ ++++G+++a++G+sG+Gks++++ l+  ++  s ++ l g   ++ ++++ +     a+v q+   F   t+ e +a+  + ++    + + ++a  +++l++++  ++  dt+vG+  ++ +sGG R Rlaia  l+ +  iL LDe ts LD+ +   + aaL++l +   t+v + h  s       D ++ + +Gk
  MMETSP1061-20121228|3910_1 107 SIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVKE-SPKLRLQGSRfINGYSITgDSQVPAAFVKQEFNFFPHmTVRETLAFRVELKLG-SLISKKAQAERVQELLQEMslEKAADTTVGDAKVRgISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVaVIHQPSqhVFSSFDDLLLVSEGK 308
                 4666789**********************998875.56777777653788988635566789*********654999999998876665.5789999999******98622789******9988769*********************************************97665555377876622345556666666665 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 4.9
   TIGR02203 196 vveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvl 257
                  + + l+ + vvk + g+ + ++    v+ +l+      ++ +s  s +++++ +++l+v+ 
  MMETSP1061-20121228|3910_1 373 DLGQKLSSKSVVKTYRGDSNIRRANIFVQFKLLLRRSLRENFRSKASLIIKFVQQISLGVIY 434
                 45577888999999999876655555555554444444466778888888999999988775 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.4e-19   9.6e-18      17     189 ..     106     292 ..      91     297 .. 0.78

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 1.4e-19
   TIGR01189  17 eglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrd...elaeellylgHldglKaeLsalEnLkfyaallq......seqk.tveealekvgLsgledlp.....vaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdlg 189
                  +++ + ++G +l++ Gp G+GK++++  laG +k es +++l+++   +  +     +   +++  +    ++++++E L f  +l        ++q   v+e l+++ L++++d+      v+ +s G +rRla+a  l+s+  +  LDEPt  lD ++ + l ++l++ +++g ++++  hq+ +
  MMETSP1061-20121228|3910_1 106 GSIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVK-ESPKLRLQGSRFINGYSitgDSQVPAAFVKQEFNFFPHMTVRETLAFRVELKLgsliskKAQAeRVQELLQEMSLEKAADTTvgdakVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQPSQ 292
                 46788899************************887.45666666665544433000333456778888888888888888888766543344444555569**********9998765111116789*************************************************999999999865 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.6   0.1   9.3e-19   6.3e-17      27     208 ..     108     289 ..      91     299 .. 0.79

  Alignments for each domain:
  == domain 1    score: 59.6 bits;  conditional E-value: 9.3e-19
   TIGR02324  27 vsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevva.epllelG..vereearakakellarlniper....LWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
                 ++ +++ G ++a++G+sGaGks+++++l ++ + es +++++  g+      ++   +    +   ++v q     P ++ +e +a +  l+lG  +++++ +++++ell+ + + +     +        sGGe++R+ ia  l+++  iL LdePt+ Ld++  +  +  +k++  +g ++++++h+
  MMETSP1061-20121228|3910_1 108 IHGRASPGRMLAIMGPSGAGKSSVMHALAGKVK-ESPKLRLQ--GSRF----INGYSITGDSQVPAAFVKQEFNFFPHMTVRETLAfRVELKLGslISKKAQAERVQELLQEMSLEKAadttVGDAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQ 289
                 5667889*********************88766.44666555..5544....566777777777899***************98762445677732456666789********994431111333445679****************999**************************************6 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   7.6e-19   5.1e-17      27     230 ..     114     319 ..     107     327 .. 0.79

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 7.6e-19
   TIGR03411  27 egelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkagl.....LshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelake.rsvvvveh.DmefvrelaekvtvlheGkvlaeGsldevq 230
                 +g + +i+Gp GaGk+ ++ +++Gk++ +  ++ ++g+  + +++ +  +++  +   q+ + f ++tv+e l   ++   ++ +l+    +k+++er++e+l+ ++Le+ ad++ g      +s G++ +L i+  lv +p++l+lDeP++G+ ++  ++    lk+la++ +++v v h   + v +  + +  ++eGk +  G+  +v+
  MMETSP1061-20121228|3910_1 114 PGRMLAIMGPSGAGKSSVMHALAGKVKES-PKLRLQGSrFINGYSITGDSQVPAAFVKQEFNFFPHMTVRETLAFRVEL--KLGSLI---SKKAQAERVQELLQEMSLEKAADTTVGDakvrgISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTgQTIVAVIHqPSQHVFSSFDDLLLVSEGKQMYFGETSKVR 319
                 678899********************865.66777776466777777777777777779999*********98666554..444444...45778899***********999987664333448******************************9999999999999998652566555551567888777888888888888888888776 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   5.4e-19   3.6e-17       5     194 ..      89     289 ..      85     320 .. 0.75

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 5.4e-19
   TIGR01288   5 idlvgvsksygdkvvvndlsf.tiaagecfgllgpngagkstiarlvlglispdegkitvlgepv.pararl..arakigvvpqfdnldreftvrenllvf..gryfg.lstreieevipsllefarleskadvrvad.....lsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthl 194
                 ++l + +k   +++++n       + g  + ++gp gagks++   + g +     k+ + g++   + +    +++    v q  n+ + +tvre l      +  + +s +   e +  ll+   le  ad+ v d     +sgg +rrl++a+ l+ +p +l ldept+gld  a   +   l+ l   g+ti+   h 
  MMETSP1061-20121228|3910_1  89 MELEAKKKGQKNRIILNGSIHgRASPGRMLAIMGPSGAGKSSVMHALAGKVKE-SPKLRLQGSRFiNGYSITgdSQVPAAFVKQEFNFFPHMTVRETLAFRveLKLGSlISKKAQAERVQELLQEMSLEKAADTTVGDakvrgISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQ 289
                 5677777888888888865551456699*********************8864.45666666553133333311445557899999999*******985321023333145556667899999999999999887654333338**********************************99999*************999885 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0     2e-18   1.3e-16      21     211 ..     110     318 ..      89     326 .. 0.77

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 2e-18
   TIGR03740  21 lkvkknsvygllGpnGaGkstllklltGllrkt.....sGeilldgrewtrkdlkkiGsliesPalyenltarenlkvrtll.......lglpesrieevlkivdlentekk.....kakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilse.velladhiGiiseGklkyekkidkd 211
                  +    ++ +++Gp GaGks+++  l+G ++++     +G+  ++g ++t         + ++   + ++t re l  r+ l       ++ + +r++e+l+ + le+         k++  s G ++rl ia  l+ +P +l ldePt Gld      l   +k + + G t++   h  s+ v    d + ++seGk  y ++++k 
  MMETSP1061-20121228|3910_1 110 GRASPGRMLAIMGPSGAGKSSVMHALAGKVKESpklrlQGSRFINGYSITGDSQVPAAFVKQEFNFFPHMTVRETLAFRVELklgslisKKAQAERVQELLQEMSLEKAADTtvgdaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQPSQhVFSSFDDLLLVSEGKQMYFGETSKV 318
                 3455567899*******************9875333346888888888888877777778888999999999999866554311111113456789**********987655111115667899***************************************************9999887537778899999999999998887765 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.5   8.3e-17   5.6e-15      20     207 ..     109     290 ..      90     324 .. 0.74

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 8.3e-17
   TIGR03005  20 elevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkG..v.araeaekravelldmvGladkadal.....paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthem 207
                 +   ++G+ +a++GpsG+Gks+++  l      +  +++++g +       +G  +  d +          +v q+fn+fph+tv + ++    l +G  + ++a+a +r  ell+ + l + ad+         +sGG+++r+aia  l  +p +l++de+ts ld      +++ l++la  t  t++ v h+ 
  MMETSP1061-20121228|3910_1 109 HGRASPGRMLAIMGPSGAGKSSVMHALAGK-VKESPKLRLQGSRFI-----NGYSITGDSQV------PAAFVKQEFNFFPHMTVRETLAFRVELKLGslIsKKAQA-ERVQELLQEMSLEKAADTTvgdakVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLAD-TGQTIVAVIHQP 290
                 45678999****************998753.345668888776554.....45566666543......345799***********9998766555555333145555.58999**999998777655111114569*********************************************85.667888888874 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   2.9e-17   1.9e-15      29     223 ..     113     313 ..      94     328 .. 0.78

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 2.9e-17
   TIGR02314  29 pkgqifgvigasgagkstlircv..nllekpt...sgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelen...tpkekikrkvtellalvglsdkk.....dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe.mdvvkricdevavidkgeliekg 223
                   g+++ ++g sgagks+++  +   + e p    +g+ +++g  +t    +++ +      ++ q fn++   tv + +a+ +el+     +k+   ++v+ell  + l +       d+    +sgg+++r+aia  l s+p +l+ de ts ld +++ s++  lk++  + g ti+ + h+  + v +  d + ++++g+ +  g
  MMETSP1061-20121228|3910_1 113 SPGRMLAIMGPSGAGKSSVMHALagKVKESPKlrlQGSRFINGYSITGD--SQVPA-----AFVKQEFNFFPHMTVRETLAFRVELKLgslISKKAQAERVQELLQEMSLEKAAdttvgDAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADT-GQTIVAVIHQpSQHVFSSFDDLLLVSEGKQMYFG 313
                 568999*************998733577888544479999999988864..44444.....5788*****************99998522257888899******999997766111224566779*********************************************977.5566666665266777778888888888766555 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1    0.0017      0.11      25      49 ..     114     138 ..      98     147 .. 0.86
   2 !   43.5   0.0   4.9e-14   3.3e-12     368     516 ..     167     319 ..     153     328 .. 0.83
   3 ?   -2.2   0.0       3.5   2.3e+02     255     315 ..     382     440 ..     363     443 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0017
   TIGR03269  25 eGevlGilGksGaGksvllhllrGl 49 
                  G++l i+G sGaGks ++h l G 
  MMETSP1061-20121228|3910_1 114 PGRMLAIMGPSGAGKSSVMHALAGK 138
                 699*******************995 PP

  == domain 2    score: 43.5 bits;  conditional E-value: 4.9e-14
   TIGR03269 368 Gllhqeyalyphrtvlenlteaiglelpdelakr...kavi.vlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshd.mdfvlevcdraalmrdGkivkiGdpeeiv 516
                  ++ qe++++ph tv e l+  + l+l + ++k+     v   l+ + +++   + + d     +s Ger r+a+a  l+ +p i+ ldept  +d  +  ++    lk   + ++t v v h+  + v +  d   l+ +Gk +  G++ ++ 
  MMETSP1061-20121228|3910_1 167 AFVKQEFNFFPHMTVRETLAFRVELKLGSLISKKaqaERVQeLLQEMSLEKAADTTVGDAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIA-ALKNLADTGQTIVAVIHQpSQHVFSSFDDLLLVSEGKQMYFGETSKVR 319
                 6789**********************988776542113344156777777777788999999**********************************987777665.567788999****99997368999*****************9999875 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 3.5
   TIGR03269 255 evvakflesvsevekekevevgediikvkdvskryisvdrGvvkavdnvslevkekeifGl 315
                  vv+ +    s++++  ++ v+ +++  + ++ ++ s    ++k v+++sl v  + i+ l
  MMETSP1061-20121228|3910_1 382 SVVKTYR-GDSNIRR-ANIFVQFKLLLRRSLRENFRSKASLIIKFVQQISLGVIYGTIYSL 440
                 4555543.3345555.6788888888889999999999999***********999999875 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   3.2e-08   2.2e-06      20     141 ..     108     225 ..      92     228 .. 0.84
   2 !   28.6   0.0   1.5e-09     1e-07     399     480 ..     226     308 ..     221     312 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 3.2e-08
   TIGR02633  20 idlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegee.lkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtrpvsd 141
                 i+ +  +G ++++ G  GaGks++m  l+g     + + ++  +g+  ++  si    +   + ++qe+ + ++++v e + +  e+ l  +l++++a   r++ell+e++l++  +t  v+d
  MMETSP1061-20121228|3910_1 108 IHGRASPGRMLAIMGPSGAGKSSVMHALAGKV---KESPKLRLQGSRfINGYSITGDSQVPAAFVKQEFNFFPHMTVRETLAFRVELKLG-SLISKKAQAERVQELLQEMSLEKAADTT-VGD 225
                 4556789*********************9954...334556666654256678888889999************************9885.59*********************99998.766 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 1.5e-09
   TIGR02633 399 lpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaii.vvsselaevlGlsdrvlvigeGk 480
                   + ++sGG++++  +a  l+ np +l ldept G+d  a + +   +++la  G +i+ v+      v+   d +l++ eGk
  MMETSP1061-20121228|3910_1 226 AKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVaVIHQPSQHVFSSFDDLLLVSEGK 308
                 567889*************************************************9998345566778999999999999998 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   0.1   7.2e-15   4.8e-13      11     217 ..      94     289 ..      85     295 .. 0.65

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 7.2e-15
   TIGR03719  11 skvvppkkeilk.dislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvre.nveegvaeikealdrfeeisaklaee.dadfdklleeqaklqekidaadawdldskleiamdalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeyk...Gtvvavthd 217
                 +k+ + ++ il+  i+    pg  + ++G+ GaGks++++ +aG  ke     l+ + +  Gy         + +v    v++ ++        +  + ++la   + ++ +l++++a+ +   +       +  le a+d+      dakv  +sGGe+rr+a++  l+++P +l+ldePt  ld+ + a l   lk+ +    t+vav h 
  MMETSP1061-20121228|3910_1  94 KKKGQKNRIILNgSIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVKESPKLRLQGSRFINGYSITG-----DSQVPAaFVKQEFNFF-----PHMTVRETLAFRvELKLGSLISKKAQAERVQELL----QEMSLEKAADT---TVGDAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLAdtgQTIVAVIHQ 289
                 3444456666652466677889999999999999999999999988877655555555555663322.....2222220222222222.....2222333333332445666776666554433333....34556666664...679**************************************999999988777765221579999985 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   7.2e-17   4.9e-15      11     203 ..     114     308 ..     107     329 .. 0.76

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 7.2e-17
   TIGR02770  11 rgkvlalvGesGsGksltalailg.lldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletl..kaleklskqak.elivealeavgLeeae..evlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithD.lgvvaeladevavmekGk 203
                  g++la++G sG+Gks +  a+ g + ++ + + +G+  ++g +++  +  +  +a++ q+    f P +t++e l   +  k  + +sk+a+ e++ e l++++Le+a+  +v +     +sGG   R+ ia  l++++++l+ DePt+ lD +++a ++  l++l ++ + +i+ + h   + v    d+++++++Gk
  MMETSP1061-20121228|3910_1 114 PGRMLAIMGPSGAGKSSVMHALAGkVKESPKLRLQGSRFINGYSITGDS--QVPAAFVKQE--FNFFPHMTVRETLAFRVelKLGSLISKKAQaERVQELLQEMSLEKAAdtTVGDAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQ-TIVAVIHQpSQHVFSSFDDLLLVSEGK 308
                 599*************999999873455567777888888887777654..3445666665..5688999*999876555104445566777625778899******98622577888999**********************************************87655.555555541445556667777777776 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.8e-05    0.0026     472     501 ..     108     137 ..      95     164 .. 0.83
   2 !   37.5   0.1   3.3e-12   2.2e-10     582     637 ..     224     279 ..     184     314 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.8e-05
   TIGR03797 472 vslkiepGefvaivGaSGsGKStllrlLLg 501
                 +  +++pG  +ai+G+SG+GKS+++  L g
  MMETSP1061-20121228|3910_1 108 IHGRASPGRMLAIMGPSGAGKSSVMHALAG 137
                 555799*******************99877 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 3.3e-12
   TIGR03797 582 isegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvt 637
                  +    ++SGG r Rl iA  lv+ P il++DE TS LD ++ a  +++l++l+ t
  MMETSP1061-20121228|3910_1 224 GDAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADT 279
                 4556789*******************************************999866 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.2   1.8e-15   1.2e-13      19     229 ..     108     315 ..      97     325 .. 0.79

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 1.8e-15
   TIGR01978  19 lnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqd.lleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdv 229
                 ++   ++G + aimGp G+Gks ++++lag+ k   +s +++l+g+  ++  ++   ++    +  q  +  p ++++e l   ++ +  +  +++ ++   ++ll+e+    + d+++ + ++  G sGGe++r  i   ++ +P++  LDe  sGlD  a   +++ +++l+++ ++++ + h+       + d + ++ +G+ +  G++
  MMETSP1061-20121228|3910_1 108 IHGRASPGRMLAIMGPSGAGKSSVMHALAGKVK---ESPKLRLQGSRfINGYSITGDSQVPAAFVKQEFNFFPHMTVRETLAFRVELKLGSLISKKAQAERVQELLQEMSLEKAADTTVGDAKV-RGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQPSQHVFSSFDDLLLVSEGKQMYFGET 315
                 4556789***********************987...467899999872566888888888888889999999*999999998888777755555555555665555555555555555555555.7***********************************************************977666666677777777776666665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.3   5.1e-16   3.4e-14      33     228 ..     111     308 ..      87     329 .. 0.75

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 5.1e-16
   TIGR02769  33 sleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlr..hltsldeserkariaellelvelrse....vldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithd.lrlvqkfaqrvlvldeGq 228
                     G  +a++G sGaGks + + l G  k ++ +++ +G      ++ +  +   +v   f      + p+++vre ++  ++      +++ ++ +r++ell+++ l++     v d + r +sGG  +r++ia  l  +P ++ lde  s ld    as+++ lk+l +  G +++ + h   + v +  + +l++ eG+
  MMETSP1061-20121228|3910_1 111 RASPGRMLAIMGPSGAGKSSVMHALAGKVK-ESPKLRLQGSRFI--NGYSI-TGDSQVPAAFVKQEFNFFPHMTVRETLAFRVElkLGSLISKKAQAERVQELLQEMSLEKAadttVGDAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADT-GQTIVAVIHQpSQHVFSSFDDLLLVSEGK 308
                 456799*********************876.5678999998764..44433.234566677888888999*******998766520445579999**************864111145778899**********************************************776.55555555541566666667777777776 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.3   2.5e-15   1.7e-13     480     672 ..     112     312 ..      93     322 .. 0.77

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 2.5e-15
   TIGR01846 480 ikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqv..gvvlqe.nvlfsrsirdnialakPaiseekviaaaklaGahdfise..lkqGyetevge.kGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic.kgrtviiiahrlst..vraadrilvlekGkives 672
                   +G+++ i+GpsG+Gks + + l    v e  ++ + g  +      +   qv  + v qe n++ + ++r+ +a          + + a+    +++++e  l++  +t+vg+ k   +sGG r+r+a+a  lv+nP il lde ts ld  + a++   l++++  g+t++ + h+ s     + d +l++ +Gk +  
  MMETSP1061-20121228|3910_1 112 ASPGRMLAIMGPSGAGKSSVMHALAG-KVKESPKLRLQGSRFINGYSITGDSQVpaAFVKQEfNFFPHMTVRETLAFRVELKLGSLISKKAQAERVQELLQEmsLEKAADTTVGDaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLAdTGQTIVAVIHQPSQhvFSSFDDLLLVSEGKQMYF 312
                 56899************999887754.4566666666666665555555555653257888844555678999998866555556666788888889999763368999****9835568********************************************998459********976421566788888888876655 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   0.3   4.2e-15   2.8e-13      45     223 ..     110     288 ..      61     294 .. 0.75

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 4.2e-15
   TIGR03415  45 ldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlels.G..vakaerrkrveeqlelvglaeWadk.....kvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvsh 223
                  + + G +l +mG sG+Gkss++ a+ g    s  k+++ ++++ ++ +++  +++        + v q+f ++P +tv+e +af +el+ G  ++k+ + +rv+e l+ ++l++ ad+     kv  +sGG ++r+ +a  +  +  il++deP s ld    a l   l +l ++  +tiv v h
  MMETSP1061-20121228|3910_1 110 GRASPGRMLAIMGPSGAGKSSVMHALAGKVKES-PKLRL-QGSRFINGYSITGDSQ-----VPAAFVKQEFNFFPHMTVRETLAFRVELKlGslISKKAQAERVQELLQEMSLEKAADTtvgdaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADT-GQTIVAVIH 288
                 3567899******************98854332.34444.6788888888877764.....56799***********************743448999999************9988762222266679********************************9999999998888665.678888888 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.3e-14   8.5e-13     357     530 ..     111     290 ..      95     324 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.3e-14
   TIGR01192 357 eakagqtvaivgptgagkttlinll.qrvyd.pksgqilidgvdiatvtreslrksiatvfqdagll.nrsirenirlgredatdeevveaakaaaasdfiekrl..kgydtlvgergnr.lsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfi.iahrl 530
                 +a  g+ +ai+gp+gagk++++  l  +v + pk        ++  ++t +s     a v q+  ++ + ++re + +  e      + + a+a   ++++++ +  k+ dt vg+   r +sgger+rlaia  ++ n  il lde ts ld  + a + +a+  l     t++ + h+ 
  MMETSP1061-20121228|3910_1 111 RASPGRMLAIMGPSGAGKSSVMHALaGKVKEsPKLRLQGSRFINGYSITGDSQV-PAAFVKQEFNFFpHMTVRETLAFRVELKLGSLISKKAQAERVQELLQEMSleKAADTTVGDAKVRgISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVaVIHQP 290
                 566799*************99976626887624433333334566678888865.55899999999935699****9988888888888999999999999986534789*****9766549*****************************************999987655543155654 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   7.7e-13   5.2e-11      25     215 ..     113     308 ..     102     322 .. 0.70

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 7.7e-13
   TIGR02323  25 ypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaer..rlllrtewGlv....hqnprGlrmevsaGanigerllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqa.rll.llrglvrelglaviivthlavarlla..qrllvmkqGr 215
                  pG++l+i+G sG+Gks++++ala+++  +  +++ +  sr+ + ++++   +    +++ e+ +      +++  +r+e+  G+ i+++  a  +    ++ ++ +  +  +   +  k + +sGG ++rl ia +lv++p ++f+ ept Gl s  a  l+  l++l  + g +++ v h     +++  + ll++ +G+
  MMETSP1061-20121228|3910_1 113 SPGRMLAIMGPSGAGKSSVMHALAGKVKES-PKLRLQG-SRFINGYSITGDSQvpAAFVKQEFNFFphmtVRETLAFRVELKLGSLISKKAQAERV---QELLQEMSLEKAADTTVGDAKVRGISGGERRRLAIACELVSNPSILFLdEPTSGLDSTAAaSLIaALKNL-ADTGQTIVAVIHQPSQHVFSsfDDLLLVSEGK 308
                 69***********************87654.4555443.334444444433321145778888875211134455889999999999999887743...45555555556667777778999********************************776651555445555.66888888888865544444223445555555 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0       2.1   1.4e+02     562     626 ..      37     108 ..      30     115 .. 0.57
   2 !   39.0   0.0   1.2e-12   7.9e-11     500     694 ..     115     317 ..      69     324 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2.1
   TIGR01193 562 Gsilenlllgakenvsqeei..kkaveiaei...kdd...ieklplGyqtelseeassisgGqkqrlalaral 626
                 Gs l+n +lg++ + s + +  kk +e  ei   +d    +ek++lG++     e  +   Gqk r+ l  ++
  MMETSP1061-20121228|3910_1  37 GSKLKNTFLGSNSKRSWNVMsgKKYIEEEEIivkDDHieaMEKMDLGFSGF-RMELEAKKKGQKNRIILNGSI 108
                 666666666666655544441122233223222133322257888998753.3455566799****9987665 PP

  == domain 2    score: 39.0 bits;  conditional E-value: 1.2e-12
   TIGR01193 500 nekitlvGlsGsGkstlakllvkffqaesGeillngks.lkdidkhelrql.inylPqePfif.sGsilenlllgakenv..sqeeikkaveiaeikddieklplGyqtelse.eassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkd..ktiifvahr..lsvakksdkiivldeGkiieqGshke 694
                  + ++++G sG+Gks+++  l +  ++ s ++ l+g   ++  +++   q+  +++ qe   f + ++ e l +  + ++   + +  +a ++ e+ +++  l++  +t + + +   isgG ++rla+a  l+s+  +l lde ts ld      ++  l +l d  +ti+ v h+   +v +  d ++ ++eGk +  G+ ++
  MMETSP1061-20121228|3910_1 115 GRMLAIMGPSGAGKSSVMHALAGKVKE-SPKLRLQGSRfINGYSITGDSQVpAAFVKQEFNFFpHMTVRETLAFRVELKLgsLISKKAQAERVQELLQEMS-LEKAADTTVGDaKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLADtgQTIVAVIHQpsQHVFSSFDDLLLVSEGKQMYFGETSK 317
                 56799***************9998765.5566665554155666665555425788888777624567777776554443104555666666777766653.5667788887514568********************************************99875579******83346899999********9887777655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   4.1e-12   2.8e-10     958    1121 ..     117     291 ..     113     319 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 4.1e-12
   TIGR01257  958 itaflghngagktttlsiltgllpptsgtvlvggkdiet.nldavrqs.lgmcpqhnilfhhltvaehilfyaqlkgrs..weeaqle.meamledtglhhk.....rneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllky.rsgrtiimsthhmd 1121
                  + a++g  gagk++ +  l+g +  +    l g + i+  ++    q    ++ q   +f h+tv e + f  +lk  s   ++aq e ++ +l++  l +       + + + +sgg +r+l++a  +v +  ++ ldeptsg+d  +  s+   l +   +g+ti+   h+  
  MMETSP1061-20121228|3910_1  117 MLAIMGPSGAGKSSVMHALAGKVKESPKLRLQGSRFINGySITGDSQVpAAFVKQEFNFFPHMTVRETLAFRVELKLGSliSKKAQAErVQELLQEMSLEKAadttvGDAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLaDTGQTIVAVIHQPS 291 
                  57899******************999999999999987523443334315678898899***************9966522356776634455666666554111005567789***********************************99988877665267999998887654 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.15       9.9     633     657 ..     115     139 ..     107     166 .. 0.73
   2 !   28.9   0.0     1e-09     7e-08     478     548 ..     221     289 ..     162     299 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.15
   TIGR00630 633 glltvitGvsgsGkstLindiLvka 657
                 g++ +i G+sg+Gks++++ +  k+
  MMETSP1061-20121228|3910_1 115 GRMLAIMGPSGAGKSSVMHALAGKV 139
                 6789999999999999988655544 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 1e-09
   TIGR00630 478 YLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehD 548
                     + +++ +sGGe++r+++a ++ s+ +  +  lDeP  GL       Li +lk+l d G t++ v h 
  MMETSP1061-20121228|3910_1 221 TTVGDAKVRGISGGERRRLAIACELVSNPS--ILFLDEPTSGLDSTAAASLIAALKNLADTGQTIVAVIHQ 289
                 344455667788888888888888877643..445788888888888888888888888888888887775 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.6e-09   2.4e-07     662     845 ..     113     315 ..      97     401 .. 0.68

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 3.6e-09
   TIGR00957 662 pegalvavvgqvgcgkssllsallaemd.....kvegkvalkg.s........vayvpqq.awiqndslrenilfgkaleekyy....kavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgis..ylpqvdviivlsdgkisemgsy 845
                   g ++a++g+ g gkss++ al ++++     +++g   ++g s         a+v q+  +    ++re + f  +l+         ++ +   ll ++ +  + d t    k   +sgg+++r+++a  + s+  i +ld+p s +d+  a  ++  +        ++t + v h  s   +   d ++++s+gk   +g  
  MMETSP1061-20121228|3910_1 113 SPGRMLAIMGPSGAGKSSVMHALAGKVKespklRLQGSRFINGySitgdsqvpAAFVKQEfNFFPHMTVRETLAFRVELKLGSLiskkAQAERVQELLQEMSLEKAADTTVGDAKVRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNLA--DTGQTIVAVIHQPSqhVFSSFDDLLLVSEGKQMYFGET 315
                 56899******************99875333233567766666322222222236777763467789********9999864321110334445679999998888887755556668*********************************99988766543322..34567777777655224556666777777776555554 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.7e-07   1.8e-05     477     643 ..     113     293 ..      45     311 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.7e-07
   TIGR00954 477 ksGnhlLiiGPnGcGKsslfRilgelWPvyg..............glltkpeegklFyvPqr.PYmslgtlRdqiiYPds..sedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelake...vgitllsvshrksLw 643
                   G+ l i+GP G GKss++  l++                       t +++    +v q   ++ + t+R+ + +        ++++  + + ++++L+e+ Le+  +  +g   v+     +sgGe+ R+a+A  +   P    LDE ts +       l  ++k+   +g t+++v h++s  
  MMETSP1061-20121228|3910_1 113 SPGRMLAIMGPSGAGKSSVMHALAGKVK--EspklrlqgsrfingYSITGDSQVPAAFVKQEfNFFPHMTVRETLAFRVElkLGSLISKKAQAERVQELLQEMSLEKAADTTVGDAKVRG----ISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAALKNladTGQTIVAVIHQPSQH 293
                 47999******************98543..233566898999986567778888889999984344444777777776541155899999************************999985....8****************************9988888877766664211678889999888854 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.4e-06   9.3e-05     356     546 ..     104     308 ..      59     315 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.4e-06
   TIGR01194 356 alGpidlriasGelvyivGenGcGkstliklllGlyi..pq...eGellldGeavsdesrdd..y.rdlfsavfadyylfddl.......vqpdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishd..dryfeladrlikladGk 546
                   G i+ r + G ++ i+G  G Gks+++  l G  +  p+   +G  +++G +++ +s+    + ++ f   f    + + l       ++    k+a  ++ ++ l+ + le+  +   ++      +s G+r+rla+ +  + +  +l lde ++  d +    +    l +l   G+ti+ + h+  ++ f   d l+ +++Gk
  MMETSP1061-20121228|3910_1 104 LNGSIHGRASPGRMLAIMGPSGAGKSSVMHALAGKVKesPKlrlQGSRFINGYSITGDSQVPaaFvKQEF-NFFPHMTVRETLafrvelkLGSLISKKAQAERVQELLQEMSLEKAADTTVGDAK-VRGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIA-ALKNLADTGQTIVAVIHQpsQHVFSSFDDLLLVSEGK 308
                 45888889999999999*********99999999875224344478889999999999874311213433.33444444444311111124455578889999999******9988887776666.889********************************998877665.578999*******999973356788889999999887 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.3e-06   8.7e-05     451     636 ..     114     320 ..     101     337 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.3e-06
   TIGR01271 451 kgqllavagstgsgkssllmmilgelepseg.kikhsgri.............sfspqvswimp.gtikdniifglsydeyrytsvi....kacqleedialla..ekdktvlgeggi.tlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllan.ktrilvt.sklehl.kkadkilllhegscyfygtfselqa 636
                  g++la+ g +g+gkss++  + g+++ s   +++ s  i             +f  q    +p  t+++ + f +   e +  s+i    +a +++e +  ++  +  +t++g+  +  +sgg+r r+++a  +  +  + +ld p s ld ++   ++ + l  l  + +t + v     +h+    d +ll+ eg+  ++g  s++++
  MMETSP1061-20121228|3910_1 114 PGRMLAIMGPSGAGKSSVMHALAGKVKESPKlRLQGSRFIngysitgdsqvpaAFVKQEFNFFPhMTVRETLAFRV---ELKLGSLIskkaQAERVQELLQEMSleKAADTTVGDAKVrGISGGERRRLAIACELVSNPSILFLDEPTSGLDSTAAASLIAA-LKNLADTgQTIVAVIhQPSQHVfSSFDDLLLVSEGKQMYFGETSKVRD 320
                 699*********************9988742133333333211111111111123333323334257777777776...455666663111334444544433221345677888887369*******************************9999888754.44444331444434313456762567***************9998765 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     2e-06   0.00014       1      42 [.     115     157 ..     115     188 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2e-06
   TIGR02322   1 grlilvvGpsGaGKDtlldlararladeprvlfa.rRvitRea 42 
                 gr+++++GpsGaGK +++++++ +++++p++++   R+i   +
  MMETSP1061-20121228|3910_1 115 GRMLAIMGPSGAGKSSVMHALAGKVKESPKLRLQgSRFINGYS 157
                 89**************************999875356665544 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   0.00032     0.021       4      25 ..     117     138 ..     115     141 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00032
   TIGR00017   4 iiaiDGPsaaGKstvakalaek 25 
                 ++ai GPs+aGKs+v +ala k
  MMETSP1061-20121228|3910_1 117 MLAIMGPSGAGKSSVMHALAGK 138
                 579****************987 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00061     0.041       2      24 ..     116     138 ..     115     150 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00061
   TIGR03263   2 klivisgpsGvGKstlvkkllee 24 
                 +++ i gpsG+GKs+++++l  +
  MMETSP1061-20121228|3910_1 116 RMLAIMGPSGAGKSSVMHALAGK 138
                 78899*************99764 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.015         1      28      48 ..     116     136 ..     108     139 .. 0.87
   2 ?    2.2   0.0       0.1       6.9     981    1020 ..     250     289 ..     199     292 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.015
   TIGR00618  28 klfvicGktGaGKtsLldAIt 48 
                 ++ +i G+ GaGK+s++ A +
  MMETSP1061-20121228|3910_1 116 RMLAIMGPSGAGKSSVMHALA 136
                 7889*************9975 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.1
   TIGR00618  981 dsLfiDEGFGslDedsldraveiLdaike.vskmigviSHv 1020
                    Lf+DE    lD+     ++++L  ++  +  ++ vi H 
  MMETSP1061-20121228|3910_1  250 SILFLDEPTSGLDSTAAASLIAALKNLADtGQTIVAVI-HQ 289 
                  569**************************666666777.85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (673 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                      261  (0.0636275); expected 82.0 (0.02)
Passed Vit filter:                        99  (0.0241346); expected 4.1 (0.001)
Passed Fwd filter:                        61  (0.0148708); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              61  [number of targets reported over threshold]
# CPU time: 1.22u 0.22s 00:00:01.44 Elapsed: 00:00:01.25
# Mc/sec: 710.63
//
Query:       MMETSP1061-20121228|3917_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.26    7.2   5.1       0.46    6.4   3.6    1.3  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter


Domain annotation for each model (and alignments):
>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.6   0.00011      0.46     756     800 ..      25      78 ..       6      84 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00011
   TIGR00844 756 deekaiekpsr........vpe.rkvqdlldsedesaddeaeseneedyedsdd 800
                  e +a e+p+         +p+  +++dl+ds+d+ adde ++ene+d +d d+
  MMETSP1061-20121228|3917_1  25 SEIVAKENPHLtpeflfenAPKtATTHDLVDSDDDDADDENDAENESDDDDDDK 78 
                 455555555545556666544315689*****************9999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1543.87
//
Query:       MMETSP1061-20121228|3915_1  [L=866]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.11s 00:00:00.49 Elapsed: 00:00:00.80
# Mc/sec: 1428.78
//
Query:       MMETSP1061-20121228|3926_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1061-20121228|3919_1  [L=1075]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1075 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.56
# Mc/sec: 2489.27
//
Query:       MMETSP1061-20121228|3921_1  [L=989]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00021   18.1   0.0    0.00046   16.9   0.0    1.5  1  TIGR02751 PEPCase_arch: phosphoenolpyruvate carboxylase


Domain annotation for each model (and alignments):
>> TIGR02751  PEPCase_arch: phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.1e-07   0.00046     172     259 ..     603     695 ..     579     710 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.1e-07
   TIGR02751 172 kkirvIPLiEdkdallkakeivkeyleaie.....peylRvFlarSDpAlnyGllaavllvKlAlselselseelgvevypIlGaGslpFRGn 259
                 k +rv PL+E+ d l  a++ +k+ ++          +  v ++ SD+A  +G laa  +     + l +++ + +ve+    G G +  RG+
  MMETSP1061-20121228|3921_1 603 KPLRVAPLFETLDDLNGAARTMKKLFSLPVymgaiNGKHEVMIGYSDSAKDAGRLAASWAQYETQEALAKVARDANVEMTFFHGKGGTVGRGG 695
                 3489**************999999888766677888999**************************************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 3626.03
//
Query:       MMETSP1061-20121228|3930_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.20s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 906.71
//
Query:       MMETSP1061-20121228|3929_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-68  229.1   0.5    1.2e-68  228.9   0.4    1.1  1  TIGR00761 argB: acetylglutamate kinase
    4.5e-28   96.2   0.7    8.1e-28   95.3   0.5    1.3  1  TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase
    2.9e-06   24.4   3.3     0.0029   14.5   0.0    2.6  2  TIGR00746 arcC: carbamate kinase
    0.00021   18.4   2.7      0.046   10.7   0.3    2.4  2  TIGR01027 proB: glutamate 5-kinase


Domain annotation for each model (and alignments):
>> TIGR00761  argB: acetylglutamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.9   0.4   1.2e-71   1.2e-68       1     230 [.      65     301 ..      65     302 .. 0.95

  Alignments for each domain:
  == domain 1    score: 228.9 bits;  conditional E-value: 1.2e-71
   TIGR00761   1 tiViKiGGaais..elleelakdiaklrkegiklvivHGGgpeinelleklgievefvnglRvTdketlevvemvligkvnkelvallekhgikavGltgkDgqlltae.kldke..dlgyvGeikkvnkelleallkagiipviaslald...eegqllNvnaDtaAaelAaaleAekLvlLtdvaGilegdkksliseleleeieqlikqavikgGmipKveaalealesgvkkvv 230
                 t+V+K+GG+a++  el+  +++d+a l++ g+++v+vHGGgp+in++lek+g+e +f +g+Rv   e+++v+emvl+g+vnke+  ++  +g +a+Gl+g D +ll+   k++k+  dlg+vGe++kvn+ ll++ll+ gi pv++++++    e+  ++NvnaD+aA+ +A  l A + ++Ltd+aG+l++ + +l+ +l+ +++e li+ + i+gGmipKv+ a +a+e gv  + 
  MMETSP1061-20121228|3929_1  65 TVVVKYGGNAMTspELKAGFCQDVATLQNLGVRIVVVHGGGPQINAMLEKVGVESRFEGGMRVSSTEVVDVAEMVLCGSVNKEISSTICSAGGRAIGLSGRDDSLLECVkKINKDgyDLGFVGEVEKVNTGLLNDLLDMGICPVVSPIGTGmgdEKDIAYNVNADVAAGRIAGELRAARALFLTDIAGVLDK-EMKLLPSLSCADVESLIEDETITGGMIPKVSYATSAIELGVGGAF 301
                 69**********99*********************************************************************************************9856666699*******************************98543377779*********************************.666***********************************9998765 PP

>> TIGR01890  N-Ac-Glu-synth: amino-acid N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.5   7.9e-31   8.1e-28      14     271 ..      60     319 ..      47     326 .. 0.86

  Alignments for each domain:
  == domain 1    score: 95.3 bits;  conditional E-value: 7.9e-31
   TIGR01890  14 ahrdktlvvglggelvedknlgk.lvadiallhslGvrlvlvhGarpqieerlakrgrtthyvrGlrvtdeaslelvke.aaGelrlaiearlsmslantpmagsrlsvvsGnfvtarPiGvveGvdyehtGevrkidaegirrlldersivllsPlgfsvtGe...ifnlamedvatsvaiklkadklillteedGildadGklvaelsaqeveslverleeet.tarllsaavkalrgGvarshlvsyaedGallqelftrd 271
                 + r++t+vv  gg+++ +++l++ + +d+a l++lGvr+v+vhG  pqi+  l+k g+++++  G+rv     +++++   +G+++++i ++++ +     +a   ls     ++ +      +G d+ + Gev k+++  ++ lld +   ++sP+g  +  e   ++n++++  a ++a +l+a + ++lt   G+ld++ kl   ls  +vesl+e           +s a  a++ Gv  + + +++   all+e+++ +
  MMETSP1061-20121228|3929_1  60 SLRGQTVVVKYGGNAMTSPELKAgFCQDVATLQNLGVRIVVVHGGGPQINAMLEKVGVESRFEGGMRVSSTEVVDVAEMvLCGSVNKEISSTICSAGG---RAIG-LSGRDDSLLECVKKINKDGYDLGFVGEVEKVNTGLLNDLLDMGICPVVSPIGTGMGDEkdiAYNVNADVAAGRIAGELRAARALFLTDIAGVLDKEMKLLPSLSCADVESLIEDETITGgMIPKVSYATSAIELGVGGAFITDGRVPHALLKEVLAGG 319
                 57******************98659*********************************************999999865268*******999997532...2222.233344455544444589**********************************99877645579999999999****************************************86443222467789999************************98654 PP

>> TIGR00746  arcC: carbamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.4   7.1e-05     0.073       2      59 ..      65     112 ..      64     131 .. 0.75
   2 !   14.5   0.0   2.8e-06    0.0029     207     291 ..     225     304 ..     189     320 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.1e-05
   TIGR00746   2 kvvvaLGGnallqrgekasaeeqrknvekaakqlvklakrgyelvithGngPqvGall 59 
                 +vvv  GGna+   + +++a           +++++l + g ++v++hG gPq+ a+l
  MMETSP1061-20121228|3929_1  65 TVVVKYGGNAMT--SPELKAG--------FCQDVATLQNLGVRIVVVHGGGPQINAML 112
                 678888888887..3333322........3456777888899***********98765 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 2.8e-06
   TIGR00746 207 viDkDlasekLaeevnaDilviltdvdavyvnygkpdekkleevkveeleelakdgefaaGsmgPkveaaiefvesrgkkaiits 291
                  ++ D+a+ ++a e+ a   + ltd+  v      ++ k l  ++ +++e+l+ ++e   G m Pkv+ a   +e +   a+it 
  MMETSP1061-20121228|3929_1 225 NVNADVAAGRIAGELRAARALFLTDIAGVLD----KEMKLLPSLSCADVESLI-EDETITGGMIPKVSYATSAIELGVGGAFITD 304
                 5678***********************9974....567899************.7788899*********999999998999886 PP

>> TIGR01027  proB: glutamate 5-kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1   0.00043      0.44       1      58 [.      64     117 ..      64     123 .. 0.79
   2 !   10.7   0.3   4.5e-05     0.046     117     239 ..     197     312 ..     191     324 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00043
   TIGR01027   1 kriVvKlGsssLteesgklkrsklaelveqvaklkkaGhevvivsSGa..vaaGleaLgl 58 
                 +++VvK G +++t+++        a ++++va+l++ G ++v+v  G+  + a le+ g+
  MMETSP1061-20121228|3929_1  64 QTVVVKYGGNAMTSPEL------KAGFCQDVATLQNLGVRIVVVHGGGpqINAMLEKVGV 117
                 689********999887......467899***************9997334555555555 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 4.5e-05
   TIGR01027 117 leellelgvvpivNENDtvaveeikfGDN...DtLsalvaalveAdlLvlltdvdgLydadprtnpdAklieeveeieeelkavagssgssvGTGGmrtKleaaelAsragve.viiasgekpekia 239
                 l+ ll++g+ p+v    t + +e  +  N   D  +  +a  + A   + ltd+ g+ d++       kl++ ++ ++ e   ++     ++ TGGm  K++ a+ A ++gv  ++i+ g+ p++++
  MMETSP1061-20121228|3929_1 197 LNDLLDMGICPVVSPIGTGMGDEKDIAYNvnaDVAAGRIAGELRAARALFLTDIAGVLDKEM------KLLPSLSCADVESL-IE----DETITGGMIPKVSYATSAIELGVGgAFITDGRVPHALL 312
                 78899999999999999888877666554334556667888888888888999999999998......77777765544333.33....3456*******************636888888886654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1173.63
//
Query:       MMETSP1061-20121228|3932_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.22s 00:00:00.38 Elapsed: 00:00:00.40
# Mc/sec: 541.16
//
Query:       MMETSP1061-20121228|3927_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-25   85.8   8.6    7.1e-24   82.3   5.9    1.9  1  TIGR00909 2A0306: amino acid transporter
    2.1e-17   61.0  17.4    1.9e-16   57.8   1.2    2.4  2  TIGR00908 2A0305: ethanolamine permease
      1e-11   42.2  12.4    1.2e-09   35.3   2.3    2.3  2  TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family
    1.8e-11   41.6  15.3      2e-06   25.0   2.0    2.2  2  TIGR03813 put_Glu_GABA_T: putative glutamate/gamma-aminobutyrate antiporter
    4.1e-07   26.7   5.7      1e-05   22.0   0.7    2.1  2  TIGR00911 2A0308: L-type amino acid transporter
    1.8e-05   21.5   3.2     0.0044   13.6   0.0    2.4  2  TIGR00913 2A0310: amino acid permease (yeast)
    5.6e-05   19.8  17.6     0.0002   18.0   4.9    2.4  2  TIGR03810 arg_ornith_anti: arginine/ornithine antiporter


Domain annotation for each model (and alignments):
>> TIGR00909  2A0306: amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   5.9   1.2e-26   7.1e-24      41     401 ..     177     563 ..     163     592 .. 0.85

  Alignments for each domain:
  == domain 1    score: 82.3 bits;  conditional E-value: 1.2e-26
   TIGR00909  41 sfllag.liallvaLvyaelaaalPvaGsvYtyayealGelvafiiGwvlileytvavavvavgfseyleelleg.vGlelPavltakpgdggvlnlpallivllltiilllGvkeskkvnsilvvlkvlavllFvalgaiklkst............................nytpfmPl.Glggvlaaaal..vFlafiGFeivstaaeevkdperdipkaiilslivvtllYvlvaavvlGvvPfrvlagseaelslvkvsaiqklgalilaagavvsiasvllatlygtsRvlfAlsrdGllpkslskvhektktPyvailifsllaallaslvpleelaeltslglliafvlvavaviilRrkrPdlqrafkvPlvpvlpalalllcl 401
                  +l+   + +l  aL  +ela+++P+a ++  +++ea+G+ ++++ G+  +++     a+++v f  yl +++          +l ++  +++   l++   ++ll++++++G    +k+   + vl + + ++ +++g  k++++                                f+P    gg+l    l  +F++   F+   +   e  d+     +a++l+l++  l+Y     +++G+  +++   ++  l++v+ +   ++ ++   ++a +s ++  +a l + +  l  +   G+lpk++sk   +++tP +  li++++++++ +++ le l+e+ +    ia ++   a   lR  rP+++r +++Pl     a+ ++  +
  MMETSP1061-20121228|3927_1 177 GYLVMPfVWSLQEALMSTELATTFPEASGGVAWVEEAFGHGAGWMQGYLGWISGATDNAIYPVLFMDYLLQIVGHkSDDGTDSELMTP--AVRFCLLSST--SILLAYVNWRGLALVGKMSIFICVLSLSPFVVLMIVGSFKVDPSrwlelpnasgvhnstalsvnddnddetdTAGGFFPNaSWGGILWRPFLnnLFWSLNSFDSGGNMVAEL-DSTTPFIRAMMLALLMSFLFYFFPLLIAIGASDSQQEDWTDGYLAVVNAEVAGPWLGAWTIFAAGISNIALFQAELTADAYQLMGMGDRGYLPKIFSK-RSRHGTPTY-GLIVGTMVIVVMGVSNLERLIEMLNFNYAIALLMEYAAFFKLRVSRPNIERPYRIPLNLAGCAIFFFPSI 563
                 5555541456778********************************************************9998763333345566666..6666667654..56789*************************************999*********************99998866678885257899876544339********999988887.6777889*******************************************88888888888888899999****************************.789******.899999999************************************************8655555543333 PP

>> TIGR00908  2A0305: ethanolamine permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   5.7   0.00038      0.22      17      91 ..     149     224 ..     140     337 .. 0.78
   2 !   57.8   1.2   3.3e-19   1.9e-16     226     433 ..     394     599 ..     357     606 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00038
   TIGR00908  17 iavglvisGeyaGWnyglasagtlGfvvatllvavlylt.fifslaelataiPkagGsfefarrafGplGGflaGv 91 
                 + + + +sG  +G + ++  +g l  ++  l++  +++    +  +elat+ P+a G+ ++   afG   G++ G 
  MMETSP1061-20121228|3927_1 149 VLMFYNVSGGPFGIETTVRAGGNLYALLGYLVMPFVWSLqEALMSTELATTFPEASGGVAWVEEAFGHGAGWMQGY 224
                 4455678999999999999999999999999998776541456679************************999996 PP

  == domain 2    score: 57.8 bits;  conditional E-value: 3.3e-19
   TIGR00908 226 kgliaailtllalalgvlvvaaGaadakklansndPlpealevivgassflskflslvGlfGliaslhgiilgysrqifalsregylPeflskvnrkkaPvraivvpgviGlalvltdetaliivvsvfGaivlyvvsmaalfklrkkePklerPyrvplyillpavalv.lalvalvttvyvdarvvasvvvafvvlivyyflysraq 433
                 ++++ a+l+ + +    l++a Ga+d ++   ++  l+  +  +  a+ +l     +   +  ia + + + + + q++ +   gylP+ +sk  r+++P   ++v++++ +++ ++ + + +i +  f   +  ++  aa+fklr  +P++erPyr+pl +   a+ +    + +l  + + d ++ + ++ +fv  +  y+   r +
  MMETSP1061-20121228|3927_1 394 RAMMLALLMSFLFYFFPLLIAIGASDSQQEDWTDGYLA--VVNAEVAGPWLGAWTIFAAGISNIALFQAELTADAYQLMGMGDRGYLPKIFSKRSRHGTPTYGLIVGTMVIVVMGVS-NLERLIEMLNFNYAIALLMEYAAFFKLRVSRPNIERPYRIPLNLAGCAIFFFpSIAATLLVMSLADFTTYSFAFGSFVTGYLVYAAKQRYE 599
                 45555555555666667888888888888777766653..333445678888888888888899********************************************997777766.56889999999999999************************87765555443134455667778888888888888887666666555544 PP

>> TIGR00905  2A0302: transporter, basic amino acid/polyamine antiporter (APA) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   2.3     2e-12   1.2e-09       5     177 ..     138     315 ..     132     332 .. 0.84
   2 !   11.9   1.2   2.6e-05     0.015     233     348 ..     394     508 ..     381     605 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2e-12
   TIGR00905   5 kskklglvaltalvvgsmiGsGifsLpqnlasvagagavligWiit.gvGmlalAfvfaklatkkpeldgGvyaYaregfgeyigFssawgYwlsavignvayavllvsalgyflplfksgnplasilaasvllWv........vtflvlrGvrqaaaintittvakliPlvlfiilglflF 177
                 +++klg++ ++ l+  ++  +G f + + + + +    +l+g+++   v +l  A+  ++lat +pe +gGv a+ +e+fg+ +g++ ++  w+s    n  y vl++++l + ++  ks++   s l++ ++  +        + +++ rG   ++ ++++  v+ l P v+++i+g f  
  MMETSP1061-20121228|3927_1 138 SPEKLGVLSMAVLMFYNV-SGGPFGIETTVRAGG-NLYALLGYLVMpFVWSLQEALMSTELATTFPEASGGV-AWVEEAFGHGAGWMQGYLGWISGATDNAIYPVLFMDYLLQIVG-HKSDDGTDSELMTPAVRFCllsstsilLAYVNWRGLALVGKMSIFICVLSLSPFVVLMIVGSFKV 315
                 4789****9999988886.5689***99998777.677788888762578999**************88886.78999**************************************.788888888887766554311111111789******************************98865 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 2.6e-05
   TIGR00905 233 kAtvlgllsvlviyilitllslGvltqqeLaelknpsmaavleavvgkw.gavlislgliisvlgallsWtllvaevlllaakdgllPkifgkvnkkkapskallltaivvqlllll 348
                 +A +l+ll   + y    l+++G  ++q+  + ++   a+v  +v g+w ga  i +   is ++ + +     a  l+ + + g+lPkif+k  ++++p+ +l++ ++v+ ++ + 
  MMETSP1061-20121228|3927_1 394 RAMMLALLMSFLFYFFPLLIAIGASDSQQ-EDWTDGYLAVVNAEVAGPWlGAWTIFA-AGISNIALFQAELTADAYQLMGMGDRGYLPKIFSKRSRHGTPTYGLIVGTMVIVVMGVS 508
                 68888888888888888888888877665.677888888888889999854433333.4456555555544455777788999***********************99887665443 PP

>> TIGR03813  put_Glu_GABA_T: putative glutamate/gamma-aminobutyrate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   2.0   3.5e-09     2e-06      28     168 ..     170     311 ..     140     318 .. 0.75
   2 !   22.3   3.2   2.2e-08   1.3e-05     278     416 ..     440     569 ..     392     593 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.5e-09
   TIGR03813  28 yglsaifyylfaavlflvpvslvaaelataypekggvfrwvgeafgarlgflaifllwvevt...iyfptvltfaavslafigveatvdeslaank.yyvlvvvlivywlataialkgvaifakvakwggivgtiipavilvilg 168
                   l a++ yl    ++ +  +l+++elat++pe  g   wv eafg+  g++  +l w+        +p+ +    + +     ++ +d++l +    + l++   +  l   +  +g+a+++k++ +  ++ ++ p v+l+i+g
  MMETSP1061-20121228|3927_1 170 GNLYALLGYLVMPFVWSLQEALMSTELATTFPEASGGVAWVEEAFGHGAGWMQGYLGWISGAtdnAIYPVLFMDYLLQIVGHKSDDGTDSELMTPAvRFCLLSSTSI--LLAYVNWRGLALVGKMSIFICVL-SLSPFVVLMIVG 311
                 4477788899999999999***************9999********************9864222689988877788888888889999888654313555444444..4567999*********9988766.688999999988 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 2.2e-08
   TIGR03813 278 swlgpvlafalaigvlagvvtwvagpssgllavakagylpkffqktnknglakrillvqaiivsvlavlfvvlpsvqaayqilsqltvllylvlyllmfasaiylrykqpdrkrpyripagaaglwiigglgfvgslla 416
                 +wlg+   fa  i  +a   + ++  +  l+ ++  gylpk f k  ++g ++  l+v ++++ v+ v         +  + l ++  + y +  l+ +a+   lr ++p+ +rpyrip  +ag  i+    + ++ll 
  MMETSP1061-20121228|3927_1 440 PWLGAWTIFAAGISNIALFQAELTADAYQLMGMGDRGYLPKIFSKRSRHGTPTYGLIVGTMVIVVMGV---------SNLERLIEMLNFNYAIALLMEYAAFFKLRVSRPNIERPYRIPLNLAGCAIFFFPSIAATLLV 569
                 79999999999999999999999999999***********************9877776665544433.........3456677788899***99999********************976665444333333333333 PP

>> TIGR00911  2A0308: L-type amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.2   0.00067      0.39      92     162 ..     184     253 ..     126     326 .. 0.75
   2 !   22.0   0.7   1.8e-08     1e-05     348     470 ..     469     592 ..     433     596 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00067
   TIGR00911  92 ilsivGalvYaElGttipksGGeyaYllevfgklkaFlklwiellvirpgsaavvalvfatylLkPvfadc 162
                 + s+  al+  El tt p + G  a+++e fg+ + +++ ++   +   +  a+  + f  ylL+ v  ++
  MMETSP1061-20121228|3927_1 184 VWSLQEALMSTELATTFPEASGGVAWVEEAFGHGAGWMQGYLG-WISGATDNAIYPVLFMDYLLQIVGHKS 253
                 66888999******************************98876.6889999999**********9665443 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 1.8e-08
   TIGR00911 348 ifvaarEGhlPsllsmihvkkltplpsllivctltllaalsgDiyslinlisfanslivalavagllylrykkpelerpikvslllp..vlfllanl..fliilslysepvecgvgliiiligvpvy 470
                 ++  +  G+lP++ s   +++ tp + l+ v t+ ++++  +++  li+++ f   +   +  a+ + lr  +p++erp +++l l+  ++f +  +   l+++sl  + +  +  +   ++g+ vy
  MMETSP1061-20121228|3927_1 469 LMGMGDRGYLPKIFSK-RSRHGTPTYGLI-VGTMVIVVMGVSNLERLIEMLNFNYAIALLMEYAAFFKLRVSRPNIERPYRIPLNLAgcAIFFFPSIaaTLLVMSL-ADFTTYSFAFGSFVTGYLVY 592
                 556788899**99875.567778887765.56666666677789***********************************999998862234544443114555555.55667788899999988887 PP

>> TIGR00913  2A0310: amino acid permease (yeast)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.6   0.00046      0.27      25      89 ..     161     221 ..     155     244 .. 0.82
   2 !   13.6   0.0   7.5e-06    0.0044     308     373 ..     460     525 ..     441     541 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00046
   TIGR00913  25 gsgkalstaGPaglligyllvgsii.yaviqslgElatlipvssgsfatyasrfvdpalgfavglt 89 
                 g+ ++++ +G + +l+gyl++ ++  +      +Elat++p+ sg++a     +v++a+g   g++
  MMETSP1061-20121228|3927_1 161 GIETTVRAGGNLYALLGYLVMPFVWsLQEALMSTELATTFPEASGGVA-----WVEEAFGHGAGWM 221
                 66788999************98764144555679**********9998.....8899999888887 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 7.5e-06
   TIGR00913 308 sslyassRlllalakqgkaPkvleyvdrrGvPlvavivsslfgllaflavskkeeevFnwllaiss 373
                 ++l a +  l+ +  +g++Pk++++ +r+G P  ++iv +++ ++  +   +   e+ n+  ai+ 
  MMETSP1061-20121228|3927_1 460 AELTADAYQLMGMGDRGYLPKIFSKRSRHGTPTYGLIVGTMVIVVMGVSNLERLIEMLNFNYAIAL 525
                 4555566789***************************98877666555555555555555555554 PP

>> TIGR03810  arg_ornith_anti: arginine/ornithine antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   4.9   3.5e-07    0.0002       6     170 ..     145     314 ..     140     321 .. 0.76
   2 !    7.2   2.0   0.00063      0.37     232     344 ..     397     508 ..     384     608 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.5e-07
   TIGR03810   6 laltalvvgssiGsGifslasdlaaaaaaGavligWvitgvGvlalalslqnlakkkPeldgGvyayakaGfGefmGfssawGyWlsawlGnvayavlllstlGyffPifkegnnvvaiiva.......svllWalhflvlrGveeaalintivtiaklvPlvvfivlaila 170
                 l++ a+++   + +G f++ + + a+ +  a+l   v+ +v  l  al   +la+  Pe +gGv a+ ++ fG+ +G++ ++  W+s    n  y vl++  l   +    ++ +   +++        s  +  l ++  rG+     + + + +  l P+vv ++++ + 
  MMETSP1061-20121228|3927_1 145 LSM-AVLMFYNVSGGPFGIETTVRAGGNLYALLGYLVMPFVWSLQEALMSTELATTFPEASGGV-AWVEEAFGHGAGWMQGYLGWISGATDNAIYPVLFMDYLLQIVGHKSDDGTDSELMTPavrfcllSSTSILLAYVNWRGLALVGKMSIFICVLSLSPFVVLMIVGSFK 314
                 433.455556789999****99999988887765566678899******************886.899********************************999888877655544433333201111113445566778889999999999999999999999998888664 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00063
   TIGR03810 232 vlGlisvlviyvlvsvlslGlltqeelaklknPalaavlekvvGkwgavlisvgliisilGallsWtllaaeilllaakekvlPkvlgkenknkaPanalvltnaliqiflli 344
                 +l l+  ++ y    ++++G    ++  +  +  la v  +v G w ++    +  is +  + +     a  l+ ++ +  lPk+++k+ ++++P+  l++ +++i ++ + 
  MMETSP1061-20121228|3927_1 397 MLALLMSFLFYFFPLLIAIGASD-SQQEDWTDGYLAVVNAEVAGPWLGAWTIFAAGISNIALFQAELTADAYQLMGMGDRGYLPKIFSKRSRHGTPTYGLIVGTMVIVVMGVS 508
                 55555555555555555555433.333455666677777888888877776666666655444433333344556678999********************999888765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.52
# Mc/sec: 1660.02
//
Query:       MMETSP1061-20121228|3928_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1136.05
//
Query:       MMETSP1061-20121228|3931_1  [L=886]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (886 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.46
# Mc/sec: 2542.22
//
Query:       MMETSP1061-20121228|3934_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-18   64.1   0.0    1.7e-18   63.8   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.4e-05   21.7   0.0    3.8e-05   21.1   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.0   8.1e-22   1.7e-18       4     185 ..      89     260 ..      86     276 .. 0.88

  Alignments for each domain:
  == domain 1    score: 63.8 bits;  conditional E-value: 8.1e-22
   TIGR03903   4 hkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtG 185
                 +  aik++ + +  +e  +a  + ei + + ++h +i++L D  e ++   + v e + G  l +++ ++     +e     l  L a+ + h++ v hRDLkP+n+++  a ++s  k+ DFG +     v++   +tlt      G+P Y a e L g p  +++D+++ G+iv   L G
  MMETSP1061-20121228|3934_1  89 KSFAIKIVTKSKLSKEDEIA-LKDEIDVLKDMQHDHIIRLYDVFEEPQ-HYYLVTEKMGGGELFDRIVQKSYYNEKEARDTCLILLSAIHHCHSKKVAHRDLKPENLLLFSAKDDSSIKIADFGFAKR---VKA--PKTLTT---QCGTPGYVAAEILEGRPYDTQADMWSIGVIVYILLGG 260
                 56799999999888777776.799******************999776.899************************************************************************8753...333..334443...36****************************9877766 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.8e-08   3.8e-05      68     145 ..     133     221 ..     106     259 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.8e-08
   TIGR03724  68 dpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkkskevedk 145
                 +p+++ +v e++ g +l d + +k++       +++  +  ++ ++H+++++h Dl ++N+++     d+++ + DfG +k+ k  +  
  MMETSP1061-20121228|3934_1 133 EPQHYYLVTEKMGGGELFDRIVQKSYynekearDTCLILLSAIHHCHSKKVAHRDLKPENLLLFsakdDSSIKIADFGFAKRVKAPKTL 221
                 56778899999998888777766665677766777888888999*****************99434447789999******96654443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.44
# Mc/sec: 1124.91
//
Query:       MMETSP1061-20121228|3937_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       865  (0.210873); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        72  (0.0175524); expected 4.1 (0.001)
Passed Fwd filter:                        43  (0.0104827); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.40u 0.25s 00:00:01.65 Elapsed: 00:00:00.99
# Mc/sec: 555.95
//
Query:       MMETSP1061-20121228|3936_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 1084.20
//
Query:       MMETSP1061-20121228|3938_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 802.93
//
Query:       MMETSP1061-20121228|3935_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 2210.82
//
Query:       MMETSP1061-20121228|3940_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 326.50
//
Query:       MMETSP1061-20121228|3939_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.30
# Mc/sec: 2586.99
//
Query:       MMETSP1061-20121228|3941_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1938.16
//
Query:       MMETSP1061-20121228|3945_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       366  (0.0892248); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|3944_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.68
# Mc/sec: 196.04
//
Query:       MMETSP1061-20121228|3952_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|3950_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|3951_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1497.03
//
Query:       MMETSP1061-20121228|3958_1  [L=806]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-08   31.2   0.0    1.6e-07   29.0   0.0    2.3  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    0.00025   18.6   1.1       0.02   12.4   0.0    3.8  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00038   16.3   0.6      0.014   11.0   0.0    2.7  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   1.1e-10   1.6e-07      30     166 ..     529     689 ..     514     734 .. 0.73

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.1e-10
   TIGR02521  30 aakirvqLaleYleqgdlekAkenlekAleldpkdada.nlalAlyyqqlg.......elekAeesfrkAltl....kpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedp............kYeqparsyeNaglcalkagdtekaekyltralkidp 166
                  a+++ + ++  l qg+++kA e+ +kA+++ ++   + +  +A+ +q+ g         e+A + f+ Al++    +    ++lNN G+ L+q  +   A + f+ A+e +             +++ ++ ++N+g + l+ gd++ a   +++a  ++ 
  MMETSP1061-20121228|3958_1 529 NASTNHNIGMIHLCQGHYQKALESFDKAIQIRKECLPPdHPDIAVSLQRKGianfalgSIEEALRCFEAALAIctpiDITRVKILNNIGVTLYQLEDHTRALKSFSDALEIQrpwlqgsvrresVVYSASIILSNMGKVHLRNGDHDLAYLVFEEAYLLQI 689
                 48889999***********************9987655266899999998888888889************963222457889*************************98542233222222214677888899999999999999999999999854433 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.2   1.6e+03       8      24 ..     101     117 ..      96     118 .. 0.77
   2 !   12.4   0.0   1.5e-05      0.02      51     117 ..     529     603 ..     484     623 .. 0.79
   3 !    4.9   0.0    0.0031       4.2      64     115 ..     584     639 ..     577     644 .. 0.47
   4 ?   -1.2   0.0      0.25   3.4e+02      18      46 ..     700     728 ..     663     735 .. 0.67
   5 ?    1.3   0.0     0.041        55      93     117 ..     749     773 ..     743     792 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.2
   TIGR02552   8 ksllgldeeqleaiYal 24 
                  ++ +l++eq e iY++
  MMETSP1061-20121228|3958_1 101 IKASNLQPEQVEMIYST 117
                 4567999********86 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.5e-05
   TIGR02552  51 eakywlgLaaclqalkeyeeAiaaYalaaald.....lddprpvy...haaecllalgekeeAlkaLklaieiae 117
                 +a     +++ +  +++y++A++ ++ a +++     +d+p+  +   + ++  +alg  eeAl+++++a++i+ 
  MMETSP1061-20121228|3958_1 529 NASTNHNIGMIHLCQGHYQKALESFDKAIQIRkeclpPDHPDIAVslqRKGIANFALGSIEEALRCFEAALAICT 603
                 55555678999999**************9987444446889877622257899********************97 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0031
   TIGR02552  64 alkeyeeAiaaYalaaa....ldlddprpvyhaaecllalgekeeAlkaLklaiei 115
                 al+  eeA+ ++++a+a    +d+   + +  +++ l++l++  +Alk +  a+ei
  MMETSP1061-20121228|3958_1 584 ALGSIEEALRCFEAALAictpIDITRVKILNNIGVTLYQLEDHTRALKSFSDALEI 639
                 33444444444433322111144455555555555555555555555555555554 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.25
   TIGR02552  18 leaiYalAYnlyqqgkyeeAeklFqlLaa 46 
                 l+++ ++A ++ ++ + +eA+++F+ L+ 
  MMETSP1061-20121228|3958_1 700 LYSLENMARAHAKSNNNAEALRIFSSLYR 728
                 45555566666666666777777777765 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.041
   TIGR02552  93 aecllalgekeeAlkaLklaieiae 117
                 + ++++l e+eeA+k++k++ e++ 
  MMETSP1061-20121228|3958_1 749 GRVHFKLLEYEEAEKCMKIVREWQI 773
                 67889999***********998874 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0     1e-05     0.014     442     497 ..     500     562 ..     487     568 .. 0.69
   2 !    9.5   0.0     3e-05     0.041     268     353 ..     537     631 ..     537     642 .. 0.73
   3 ?   -3.0   0.0      0.19   2.6e+02     712     732 ..     667     687 ..     657     730 .. 0.40

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1e-05
   TIGR02917 442 Lrsgefdkalaaakklekkqpd.......naslynllgaiylgkkdlakAreafekALkiepd 497
                 L+s++f+ a+++ +k +   ++       nas+ + +g i+l ++ ++kA e+f kA +i ++
  MMETSP1061-20121228|3958_1 500 LQSRRFEIAISIFEKIKRGSEGnkqfhhlNASTNHNIGMIHLCQGHYQKALESFDKAIQIRKE 562
                 677777777777777776666611112223455555778888888888888888888888776 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 3e-05
   TIGR02917 268 AlvdfqkkkfedAretlqaalksapeylp........alllaGaseyqlgeleqAeqylnqilka.aPnshqArrllAaiqLkegkvdeaiatls 353
                 +++++ ++ +++A+e++ +a+++  e lp        +l+  G+++++lg++e+A   ++++l++ +P +++ +++l  i   + + ++  + l+
  MMETSP1061-20121228|3958_1 537 GMIHLCQGHYQKALESFDKAIQIRKECLPpdhpdiavSLQRKGIANFALGSIEEALRCFEAALAIcTPIDITRVKILNNIGVTLYQLEDHTRALK 631
                 68999999999999999888888766554333344337888999999999999999999999986468888888888777666665555555554 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.19
   TIGR02917 712 lalrqkdykaAiqaykkalkr 732
                 ++lr+ d   A   +++a+ +
  MMETSP1061-20121228|3958_1 667 VHLRNGDHDLAYLVFEEAYLL 687
                 333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.20s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 2659.58
//
Query:       MMETSP1061-20121228|3955_1  [L=1099]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1099 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.47
# Mc/sec: 3086.30
//
Query:       MMETSP1061-20121228|3959_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-10   38.4   0.0    1.4e-05   22.7   0.0    2.9  3  TIGR02764 spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB
    2.2e-07   28.6   0.0    2.3e-06   25.3   0.0    2.2  2  TIGR02884 spore_pdaA: delta-lactam-biosynthetic de-N-acetylase
    5.1e-07   26.9   0.0    9.6e-07   26.0   0.0    1.4  1  TIGR03006 pepcterm_polyde: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily
    4.1e-06   24.0   0.0     0.0098   13.0   0.0    2.3  2  TIGR02873 spore_ylxY: probable sporulation protein, polysaccharide deacetylase family


Domain annotation for each model (and alignments):
>> TIGR02764  spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.93   9.6e+02     106     157 ..     183     236 ..     179     251 .. 0.69
   2 !   22.7   0.0   1.4e-08   1.4e-05      19      94 ..     423     501 ..     403     507 .. 0.70
   3 !   13.0   0.0   1.4e-05     0.014      97     190 ..     534     631 ..     487     632 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.93
   TIGR02764 106 GsfnkevlkvaeelgykvvqwsvdslDwknpgvek..ivdrvvknvksGdiiLl 157
                 G+++++ lk+    g  +   s  s D + ++++k  ++++v  ++++G++ L+
  MMETSP1061-20121228|3959_1 183 GHWKRTRLKTQTGHGGGMFSASTSSSDANADAHDKpnVLQHVQTQIQEGKLPLV 236
                 667777777777777777777788888777776643389999999999987665 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 1.4e-08
   TIGR02764  19 ekvekildvLkeedvkATFFlsgkwae.rhpelvkeivkegheigshgyahkdltklek..ekikkdllkaqevieklt 94 
                 +++ ++ld+L+++d++ATF +++++   +h   + ++ +eghe+ +hg +   + k+ +  e   + l + +++ie+l 
  MMETSP1061-20121228|3959_1 423 SRLADVLDLLDRYDARATFMVISSFLSpSHEPDMIRLLREGHELANHGVRDEAMDKMATsiEVFLEALDECNHKIEDLQ 501
                 46789*****************99986344444556889***********99998875411556666777777777665 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 1.4e-05
   TIGR02764  97 kpkllRpPsGsfnkevlk.vaeelgykvvqwsvdslDwknpgvekivdrvvknvksGdiiLlHasdsa...kqTekaLpeilkkL.kekgyefvkvsel 190
                  ++ +R P+G+f++++ + +a+   y+v+     +    ++g     ++  +++++G+i L+H  +++   ++  +aL+ +l+ L ++k +++v+v+el
  MMETSP1061-20121228|3959_1 534 GVRWFRAPHGRFTTTMEEgLARREMYNVMCSAYAACPIIEDG-PWLAETLSQQIRNGSIALIHMPEKCgfrEYCFEALELLLEALcNKKNFKVVTVGEL 631
                 457799999999999887244444555555455555666666.46789999************988864437899*********955789******997 PP

>> TIGR02884  spore_pdaA: delta-lactam-biosynthetic de-N-acetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.2e-09   2.3e-06      53     129 ..     426     505 ..     416     508 .. 0.87
   2 ?    0.5   0.0     0.086        89     131     194 ..     536     596 ..     518     631 .. 0.70

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2.2e-09
   TIGR02884  53 ekildvlkekkvkaaffvtghyik..tkpdlvkrmedeGhivgnhsvhhpsltkv..deeklkeeleeveeevkevtgkke 129
                 + +ld+l + +++a+f+v++ ++   ++pd++ r+  eGh ++nh v+ + + k+  + e + e l+e +++++++  k +
  MMETSP1061-20121228|3959_1 426 ADVLDLLDRYDARATFMVISSFLSpsHEPDMI-RLLREGHELANHGVRDEAMDKMatSIEVFLEALDECNHKIEDLQRKAM 505
                 579********************732567877.7889***************9996677899999*****99999988776 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.086
   TIGR02884 131 kylrPPrGkfsertlaltkelGyktvfWslaykdWkvdkqkgkeeakkkilkkihpGailllha 194
                 +++r P+G+f+ +  +   +  +++v+ s ay+   + ++  +    +++ ++i +G+i+l+h 
  MMETSP1061-20121228|3959_1 536 RWFRAPHGRFTTTMEEGLARREMYNVMCS-AYAACPIIEDGPW--LAETLSQQIRNGSIALIHM 596
                 67777777776555444444444555554.5555555333333..2356788999999999995 PP

>> TIGR03006  pepcterm_polyde: polysaccharide deacetylase family protein, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   9.3e-10   9.6e-07      31     113 ..     420     505 ..     407     512 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 9.3e-10
   TIGR03006  31 rvernverilelldekevkatffvlG.Wva.eryPelvrriveaGhelashGyghervtel..treefradierskklledlsgqav 113
                 r       +l+lld+ +++atf+v+  +++    P+++r + ++Ghela hG   e + ++  + e f + +  + + +edl+ +a+
  MMETSP1061-20121228|3959_1 420 RNLSRLADVLDLLDRYDARATFMVISsFLSpSHEPDMIR-LLREGHELANHGVRDEAMDKMatSIEVFLEALDECNHKIEDLQRKAM 505
                 333345569**************9972444257799997.6789*********999987661156899*****99999999988765 PP

>> TIGR02873  spore_ylxY: probable sporulation protein, polysaccharide deacetylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   9.6e-06    0.0098     100     171 ..     425     499 ..     420     508 .. 0.80
   2 !    8.7   0.0    0.0002       0.2     175     266 ..     533     631 ..     504     633 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9.6e-06
   TIGR02873 100 lpkilkilkkhdvkatffleGkwvk..envqlakmiveegheiGnhaynhpdmkklsk..eeiseqlektneviea 171
                 l  +l++l+++d +atf++  ++    +++++++ +  eghe+ nh      m+k+++  e   e l++ n+ ie 
  MMETSP1061-20121228|3959_1 425 LADVLDLLDRYDARATFMVISSFLSpsHEPDMIR-LLREGHELANHGVRDEAMDKMATsiEVFLEALDECNHKIED 499
                 6789***************999986213344554.5689**************99965226678999999999986 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0002
   TIGR02873 175 ekpkwfappsGsfrdevvqiaaelqmetilwtvdtidwkkpepsvlvdrvlskihpGaivlmhptes......saegleelitki.kekGykiGtvtel 266
                   ++wf  p G f  ++ +  a  +m  ++ +  +      +   l + + ++i +G+i l+h  e       + e+le l+  + ++k +k+ tv el
  MMETSP1061-20121228|3959_1 533 IGVRWFRAPHGRFTTTMEEGLARREMYNVMCSAYAACPIIEDGPWLAETLSQQIRNGSIALIHMPEKcgfreyCFEALELLLEALcNKKNFKVVTVGEL 631
                 3479****************************9999999999999******************655411111145788888887624567888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.57
# Mc/sec: 1499.67
//
Query:       MMETSP1061-20121228|3968_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 415.52
//
Query:       MMETSP1061-20121228|3963_1  [L=1064]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.12s 00:00:00.57 Elapsed: 00:00:00.56
# Mc/sec: 2463.80
//
Query:       MMETSP1061-20121228|3964_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.18
# Mc/sec: 1737.86
//
Query:       MMETSP1061-20121228|3971_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.1   0.0      0.062   10.3   0.0    1.3  1  TIGR03885 flavin_revert: probable non-F420 flavinoid oxidoreductase


Domain annotation for each model (and alignments):
>> TIGR03885  flavin_revert: probable non-F420 flavinoid oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.5e-05     0.062     257     309 ..     152     202 ..     134     205 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.5e-05
   TIGR03885 257 svkeedveeavrisadldqlaellqeladlGfdelylhnvsreqeefidafge 309
                 sv++ +v++  +i++d+d+++  lq++ d+Gfd   lh+ s +  + ++ ++e
  MMETSP1061-20121228|3971_1 152 SVRSGNVDR--NIADDPDEVVRKLQTCLDAGFDTFQLHDQSSRSLDIVRRMNE 202
                 455555555..689*************************99998888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.43
# Mc/sec: 1718.93
//
Query:       MMETSP1061-20121228|3972_1  [L=1289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.20s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 4362.41
//
Query:       MMETSP1061-20121228|3976_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 639.64
//
Query:       MMETSP1061-20121228|3975_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 2465.37
//
Query:       MMETSP1061-20121228|3973_1  [L=866]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 2787.87
//
Query:       MMETSP1061-20121228|3977_1  [L=846]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.11s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 3284.20
//
Query:       MMETSP1061-20121228|3978_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-53  178.1  10.5    1.3e-34  117.4   0.2    4.3  5  TIGR03966 actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
    4.1e-52  175.2   3.1    1.5e-34  117.4   0.3    4.1  4  TIGR02708 L_lactate_ox: L-lactate oxidase
    4.3e-12   43.4   0.1    1.4e-11   41.8   0.0    1.7  2  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
    8.3e-07   26.4   0.5    4.9e-06   23.8   0.5    1.8  1  TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein
      1e-05   22.4   1.6    3.3e-05   20.8   0.8    1.9  1  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    0.00017   18.5   0.1    0.00028   17.7   0.0    1.2  1  TIGR01303 IMP_DH_rel_1: IMP dehydrogenase family protein
    0.00096   16.6   0.1     0.0014   16.0   0.0    1.2  1  TIGR01306 GMP_reduct_2: guanosine monophosphate reductase
     0.0011   15.9   1.0     0.0074   13.2   0.1    2.1  2  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
     0.0093   13.1   0.1      0.014   12.5   0.1    1.2  1  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II


Domain annotation for each model (and alignments):
>> TIGR03966  actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.3e-06    0.0011      12      64 ..      68     120 ..      60     127 .. 0.89
   2 !   36.7   0.5   9.2e-13   4.2e-10      62     121 ..     142     203 ..     134     207 .. 0.87
   3 !   11.9   0.0   3.1e-05     0.014     122     159 ..     236     273 ..     219     283 .. 0.88
   4 ?   -4.0   0.3       2.1   9.7e+02     230     244 ..     351     365 ..     343     367 .. 0.76
   5 !  117.4   0.2   2.9e-37   1.3e-34     249     378 ..     398     532 ..     381     537 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.3e-06
   TIGR03966  12 qrrakkrlpksvykaliagsekGvtladnvaafaelglaprvvdakakrelst 64 
                 q  akk+lp+  y+ l +gs+   +la+n ++f+   l+prv +   k ++ t
  MMETSP1061-20121228|3978_1  68 QLLAKKQLPRDLYEYLASGSDDEASLAENRRSFGRWWLRPRVLKPVGKVSTQT 120
                 6679**************************************99888877665 PP

  == domain 2    score: 36.7 bits;  conditional E-value: 9.2e-13
   TIGR03966  62 lsttvlGqeislpvlisptGvqav.dp.dgevavaraaaargtalglssfaskpveevvaan 121
                  s++   +++++pv++sp+Gv a+ dp +ge a ara a +g+ +gls  ++k++e+v+aa 
  MMETSP1061-20121228|3978_1 142 SSSSSASFSVAMPVFVSPAGVHALcDPqHGECATARACANSGILFGLSQHSTKSIEQVAAAT 203
                 556667789**************7577469*****************************996 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 3.1e-05
   TIGR03966 122 dkvffqlywvGsrdeilarleraraaGakGliltldws 159
                 +  f+q y + ++d+ ++ + ra +aG +G+ lt+d +
  MMETSP1061-20121228|3978_1 236 SLKFYQSYILKDKDRTIRLIRRAIRAGYQGVFLTVDSV 273
                 5679*******************************965 PP

  == domain 4    score: -4.0 bits;  conditional E-value: 2.1
   TIGR03966 230 qtplptwedvawlre 244
                      tw+ v+w+++
  MMETSP1061-20121228|3978_1 351 FEQDVTWDHVRWIKR 365
                 556679******975 PP

  == domain 5    score: 117.4 bits;  conditional E-value: 2.9e-37
   TIGR03966 249 pfllkGvlrvddarravdvGvtaisvsnhGGnnldgtpaairalpaiaeav.....GdqvevlldGGirrGsdvvkalalGaravliGraylwGlaanGeaGvenvldilrsGideallGlgkasvhelsredlv 378
                 p+++kG+l ++da  avd+G++ai +snhGG +ldg p+a+ +lp +aea+     G++v + +dGGirrG+d+ kalalGa av iG+  ++ l+ +G++ ve++l++l++ ++ a+   g + + ++ r  ++
  MMETSP1061-20121228|3978_1 398 PLVVKGILTAEDALLAVDAGADAIMLSNHGGRQLDGCPSALDVLPEVAEALrgeskGKNVPIWIDGGIRRGTDILKALALGASAVGIGKPIFFALSVGGQSAVEHLLHLLQTELEAAMAICGIERISDVVRGHVM 532
                 89**********************************************99655555899***********************************************************99999999999988764 PP

>> TIGR02708  L_lactate_ox: L-lactate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   7.2e-09   3.3e-06      14      74 ..      62     122 ..      50     130 .. 0.88
   2 !   13.5   0.2   1.2e-05    0.0056      78     130 ..     150     203 ..     134     210 .. 0.86
   3 !   17.3   0.0   8.9e-07   0.00041     133     183 ..     236     286 ..     214     296 .. 0.87
   4 !  117.4   0.3   3.2e-37   1.5e-34     229     353 ..     397     526 ..     380     533 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 7.2e-09
   TIGR02708  14 intydleeeaqkvipkgafgyiasaagdtftlrenirafkhkllvprllkdvenpsteiel 74 
                  n+ d++  a+k +p+  ++y+as+++d+ +l en r+f    l pr+lk v + st++ l
  MMETSP1061-20121228|3978_1  62 FNANDFQLLAKKQLPRDLYEYLASGSDDEASLAENRRSFGRWWLRPRVLKPVGKVSTQTVL 122
                 58899999**********************************************9999865 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.2e-05
   TIGR02708  78 klksplilapvaahklaneq.kevataravkefgsiytissystadleeiseal 130
                  +  p+ ++p   h l + q +e atara  + g ++ +s +st ++e++++a 
  MMETSP1061-20121228|3978_1 150 SVAMPVFVSPAGVHALCDPQhGECATARACANSGILFGLSQHSTKSIEQVAAAT 203
                 5788************986538***************************99875 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 8.9e-07
   TIGR02708 133 tprwfqlylskddginrdildrvkaegakaivltadatvggnrevdkrnkf 183
                 + +++q y+ kd +    ++ r+   g++ + lt d+   g re d rn+f
  MMETSP1061-20121228|3978_1 236 SLKFYQSYILKDKDRTIRLIRRAIRAGYQGVFLTVDSVRFGYREADARNGF 286
                 5689**********9999********************************9 PP

  == domain 4    score: 117.4 bits;  conditional E-value: 3.2e-37
   TIGR02708 229 lpvyvkgiqcaedaeralkagasgiwvtnhgarqldeapaafdslqevaeavd.....krvpivfdsgvrrgehvfkalasgadlvalgrpvlyglalggsvgarqvleklnkelkrvmqlagtqtiedv 353
                 +p+ vkgi +aeda  a++aga  i ++nhg+rqld++p+a+d l+evaea+      k+vpi +d g+rrg  ++kala ga  v +g+p+++ l++gg   + ++l+ l+ el+  m ++g + i dv
  MMETSP1061-20121228|3978_1 397 FPLVVKGILTAEDALLAVDAGADAIMLSNHGGRQLDGCPSALDVLPEVAEALRgeskgKNVPIWIDGGIRRGTDILKALALGASAVGIGKPIFFALSVGGQSAVEHLLHLLQTELEAAMAICGIERISDV 526
                 6999*********************************************99743333489********************************************************************98 PP

>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.55   2.5e+02     175     216 ..     390     428 ..     351     431 .. 0.66
   2 !   41.8   0.0     3e-14   1.4e-11     257     332 ..     454     529 ..     442     534 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.55
   TIGR02151 175 eiasavsvPvivKEvGfGlskevakeladagvkaidvaGaGG 216
                 +  +   +P++vK +   l++e+a   +dag++ai ++  GG
  MMETSP1061-20121228|3978_1 390 QQQQLRYFPLVVKGI---LTAEDALLAVDAGADAIMLSNHGG 428
                 333334467777754...677888888888888888887777 PP

  == domain 2    score: 41.8 bits;  conditional E-value: 3e-14
   TIGR02151 257 akkleliasGGlrsgldvakalaLGAdlvglarplLkaaekegeeavievlekikeelkvamfllgaknieelkkv 332
                  k++++   GG+r g d++kalaLGA++vg+ +p+  a+   g++av + l+ +++el +am ++g + i+++ + 
  MMETSP1061-20121228|3978_1 454 GKNVPIWIDGGIRRGTDILKALALGASAVGIGKPIFFALSVGGQSAVEHLLHLLQTELEAAMAICGIERISDVVRG 529
                 567889999*************************************************************998765 PP

>> TIGR01304  IMP_DH_rel_2: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.5   1.1e-08   4.9e-06     187     292 ..     398     494 ..     393     501 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.1e-08
   TIGR01304 187 PvvvGgvvdyetalhlmrtGaagvlvGggtgaatttrevlGievpmataiadvaaarrdyldetGgryvhviadGgietsGdlakaiacGadavvlGsPlaraaea 292
                 P+vv g+++ e al  + +Ga ++++       +  r+  G   ++   + +va a r    e+ g+ v++  dGgi+ + d+ ka+a Ga av +G P+  a   
  MMETSP1061-20121228|3978_1 398 PLVVKGILTAEDALLAVDAGADAIMLSN-----HGGRQLDGCPSAL-DVLPEVAEALR---GESKGKNVPIWIDGGIRRGTDILKALALGASAVGIGKPIFFALSV 494
                 7788888888888888888888888772.....2233333432222.23456666655...59999*********************************9776655 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.8   7.2e-08   3.3e-05     323     357 ..     452     486 ..     377     493 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 7.2e-08
   TIGR01302 323 aaksgipviADGGirysGdivKalalGadavmlGs 357
                  + +++p+  DGGir   di KalalGa+av +G 
  MMETSP1061-20121228|3978_1 452 SKGKNVPIWIDGGIRRGTDILKALALGASAVGIGK 486
                 467899*************************9996 PP

>> TIGR01303  IMP_DH_rel_1: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.1e-07   0.00028     267     358 ..     397     486 ..     384     497 .. 0.73

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 6.1e-07
   TIGR01303 267 vpivagnvvsaegvrdlveaganiikvgvgpgamcttrmmtgvgrpqfsavlecaaearklgahvwadggvrdprdvalalaagasnvmvgs 358
                  p+v   +++ae     v+aga+ i +    g        +    p+ +  l   ++ +     +w dgg+r   d+  ala gas v +g 
  MMETSP1061-20121228|3978_1 397 FPLVVKGILTAEDALLAVDAGADAIMLSNHGGRQLDGCPSALDVLPEVAEALRGESKGK--NVPIWIDGGIRRGTDILKALALGASAVGIGK 486
                 57777778888888888888888887776666554444333334555555555544444..4469***********************9995 PP

>> TIGR01306  GMP_reduct_2: guanosine monophosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.2e-06    0.0014     189     228 ..     447     486 ..     403     506 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.2e-06
   TIGR01306 189 alrlcakaarkpiiadggirthgdiaksirfgasmvmigs 228
                 alr  +k  + pi  dggir   di k++ +gas v ig 
  MMETSP1061-20121228|3978_1 447 ALRGESKGKNVPIWIDGGIRRGTDILKALALGASAVGIGK 486
                 788899999*****************************96 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.091        41     240     262 ..     401     423 ..     392     432 .. 0.78
   2 !   13.2   0.1   1.6e-05    0.0074     234     273 ..     456     495 ..     447     527 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.091
   TIGR01037 240 vGGitsaeDalefllaGasavqv 262
                 v Gi +aeDal  + aGa a+ +
  MMETSP1061-20121228|3978_1 401 VKGILTAEDALLAVDAGADAIML 423
                 56788888888888888888754 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1.6e-05
   TIGR01037 234 diPiiGvGGitsaeDalefllaGasavqvGtavyyegkvf 273
                 ++Pi   GGi+   D+l  l  Gasav +G  +++  +v 
  MMETSP1061-20121228|3978_1 456 NVPIWIDGGIRRGTDILKALALGASAVGIGKPIFFALSVG 495
                 89**999**************************9987654 PP

>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   3.2e-05     0.014     128     194 ..     416     489 ..     382     505 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.2e-05
   TIGR03151 128 lGadaviaeGmeaGGhiGelttlalvpqvvdav.......siPviaaGGiadgrGlaaalalGaeavqlGtrfl 194
                 +Gada++   +      G  ++l ++p+v++a+       ++P+   GGi  g  ++ alalGa+av +G   +
  MMETSP1061-20121228|3978_1 416 AGADAIMLSNHGGRQLDGCPSALDVLPEVAEALrgeskgkNVPIWIDGGIRRGTDILKALALGASAVGIGKPIF 489
                 67777776655444444555666666666665433333338****************************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.48
# Mc/sec: 1537.12
//
Query:       MMETSP1061-20121228|3980_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 1132.33
//
Query:       MMETSP1061-20121228|3974_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.1e-295  977.5   0.0   5.9e-295  977.3   0.0    1.0  1  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
     3e-232  770.0   0.1   3.7e-232  769.7   0.0    1.0  1  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    6.6e-48  161.3   0.0    7.4e-40  134.7   0.0    2.3  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    7.1e-46  154.6   0.0    1.4e-36  124.0   0.0    2.2  2  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    7.7e-43  144.5   0.0    1.2e-36  124.2   0.0    2.2  2  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    9.5e-43  144.4   0.0    2.8e-41  139.6   0.0    2.1  2  TIGR01039 atpD: ATP synthase F1, beta subunit
    9.8e-43  144.3   0.0    9.7e-37  124.6   0.0    2.3  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    1.7e-41  140.4   0.0    9.3e-35  118.2   0.0    2.2  2  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    3.4e-36  122.7   0.0    5.9e-33  112.1   0.0    2.3  2  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
      1e-32  111.0   0.2    2.4e-26   90.0   0.0    2.1  2  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
    1.5e-30  103.9   0.1    2.8e-25   86.6   0.0    2.1  2  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
    6.7e-19   65.8   0.0    4.8e-14   49.8   0.0    2.3  2  TIGR00962 atpA: ATP synthase F1, alpha subunit
      8e-18   62.2   0.1    4.1e-13   46.7   0.0    2.4  2  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha


Domain annotation for each model (and alignments):
>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  977.3   0.0  1.9e-297  5.9e-295       1     590 [.      23     624 ..      23     625 .. 0.97

  Alignments for each domain:
  == domain 1    score: 977.3 bits;  conditional E-value: 1.9e-297
   TIGR01042   1 eygsvkkvsgpvvvaeemagaamyelvrvgheelvgeiirlegdkatiqvyeetagltvgdpvlrtgkplsvelgpgilgnifdgiqrplkaiaeksqsiyiprgvnvealdrekkwefkpkklrvgdhitggdiygvveensllk.hkillpprakgtityiapag.....eytveekvlev..efdgkkkkysmlqvwpvrsprpvaeklaadtplltgqrvldalfpsvqggttaipgafgcgktvisqslskysnsdvivyvgcgergnemaevlrdfpeltvel...dg..reesimkrttlvantsnmpvaareasiytgitlaeyfrdmgynvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsperegsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylkaleefyekeypefvelrtkvkeilqeeeeleeivqlvgkdalaesdkitlevaklikedflqqngytkydkfcplyktvkmlrnliafydlakkavektaqddnkitysiikeklgdllyklsslkfedpadgeekikaeyeelaedl 590
                 +yg+++kvsgp+vvae m+gaamyel+rvgh++lvgeii+legd+a+iqvye+t+gltvgdpvlr ++plsvelgpgi+++ifdgiqrpl++i ++s+++y+p+gv+v++l+re++w f+p +++ g+ i+ggd++g+v en +++ hkil pp+  gt++ i  +g     ++ v+++v+ev  e   + +k ++ + wpvr+prp+aekl++++pl+tg rv+dalfpsv ggt+a+pgafgcgktvisqslsk+snsd+i+yvgcgergnemaevl dfpelt+++   dg  re  imkrt+lvantsnmpvaareasiytgitlaeyfrd+g+nvsm+adstsrwaealreisgrl+empadsgypaylgarla+fyeragrvkclgsp+reg+vs+vgavsppggdfsdpvt+atl+ivqvfwgldkklaqrkhfps+nwlisysky+++le+f++ +++++ +lr+ + +ilq+e++l+eivqlvgk++l+e +k+++evakli+edfl+qn++t++d  cpl ktv+ml+ +i+fy+l++ka++++ + d+kity+ i+++l+ ++ k++ +k+  p +  ++i+a+y ++ +++
  MMETSP1061-20121228|3974_1  23 DYGYIFKVSGPLVVAEGMSGAAMYELMRVGHQKLVGEIIKLEGDTASIQVYEDTSGLTVGDPVLRKKQPLSVELGPGIMESIFDGIQRPLETIWKESGDVYVPKGVDVPCLSRETRWTFTPGAFKEGQPISGGDVVGTVYENEIIDsHKILCPPNVYGTVSKIYTTGtdgneSFIVDDVVMEVfnESTNTTHKLTLSHFWPVRRPRPIAEKLPGNQPLITGLRVIDALFPSVLGGTCAVPGAFGCGKTVISQSLSKFSNSDAIIYVGCGERGNEMAEVLADFPELTMTVtdpDGseREVGIMKRTALVANTSNMPVAAREASIYTGITLAEYFRDQGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRVKCLGSPDREGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYSKYMQVLEPFFNGMDEQYSTLRETAMNILQQEDNLQEIVQLVGKESLSEDQKVIMEVAKLIREDFLAQNAFTEFDYTCPLVKTVGMLKVIITFYNLSQKAIADSPA-DSKITYAHIRTALAPIIQKVVDTKYVMPREPVDSINATYGKIIDEM 624
                 59***********************************************************************************************************************************************99**************998877333334889******94444556788999********************************************************************************************9877673345679***********************************************************************************************************************************************************************************************************************************************************9988.79***************************************99998 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  769.7   0.0  1.2e-234  3.7e-232       3     556 ..      25     594 ..      23     625 .. 0.92

  Alignments for each domain:
  == domain 1    score: 769.7 bits;  conditional E-value: 1.2e-234
   TIGR01043   3 GeivrvsGplvvaeglkgakmyevvkvgeekliGeiiriegdkaviqvyeetsGikpgepvestGaplsvelGpGllesiydGvqrpldvlkeksg.afierGvdapaldrdkkwefkpk.vkkGdkvegGdiiGvveetslie.hkilvppevegelkeiaeeG.....dytvedtiavvek..dGeeeelkllqkwpvrkkrpvkeklepeeplvtGqrildtlfpiakGGtaaipGpfGsGktvtqqslakwsdaeivvyiGcGerGnemtevleefpeledpkt....Gkp...llertvliantsnmpvaareasiytGitiaeyfrdmGydvalvadstsrwaealreisgrleempgeeGypaylasrlaefyeraGrvktlgseeregsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwlqsyslyvdsvedwfaenvdeewrelrdealellqkeaelqeivrlvGsdalpekeklvlevarlireaflkqnafdevdtysspekqvkilkvilkfeeealealekGvpveeilklevkeelarv 556
                 G i +vsGplvvaeg++ga mye+++vg++kl+Geii++egd+a iqvye+tsG+  g+pv +  +plsvelGpG++esi+dG+qrpl+++ ++sg  ++ +Gvd+p l r+++w+f+p   k+G+ ++gGd++G+v e ++i+ hkil pp+v g++++i + G     ++ v+d++++v +  + ++++l+l + wpvr++rp++ekl+ ++pl+tG r++d+lfp   GGt+a+pG+fG Gktv  qsl+k+s+++ ++y+GcGerGnem+evl +fpel    t     +    +++rt l+antsnmpvaareasiytGit+aeyfrd+G +v+++adstsrwaealreisgrl emp++ Gypayl +rla fyeraGrvk lgs++reg+v+vvgavsppGGdfs+pvt  tl iv+vfw ld kla+r+hfp++nwl sys y++ +e +f+  +de++  lr++a+++lq+e++lqeiv+lvG+++l+e++k+++eva+lire+fl qnaf e d  ++  k+v +lkvi++f++ +++a+    + ++i+ +++++ la +
  MMETSP1061-20121228|3974_1  25 GYIFKVSGPLVVAEGMSGAAMYELMRVGHQKLVGEIIKLEGDTASIQVYEDTSGLTVGDPVLRKKQPLSVELGPGIMESIFDGIQRPLETIWKESGdVYVPKGVDVPCLSRETRWTFTPGaFKEGQPISGGDVVGTVYENEIIDsHKILCPPNVYGTVSKIYTTGtdgneSFIVDDVVMEVFNesTNTTHKLTLSHFWPVRRPRPIAEKLPGNQPLITGLRVIDALFPSVLGGTCAVPGAFGCGKTVISQSLSKFSNSDAIIYVGCGERGNEMAEVLADFPELTMTVTdpdgSERevgIMKRTALVANTSNMPVAAREASIYTGITLAEYFRDQGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRVKCLGSPDREGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYSKYMQVLEPFFN-GMDEQYSTLRETAMNILQQEDNLQEIVQLVGKESLSEDQKVIMEVAKLIREDFLAQNAFTEFDYTCPLVKTVGMLKVIITFYNLSQKAIADSPADSKITYAHIRTALAPI 594
                 89*****************************************************************************************9999878*********************758*********************659***************98774444459*******9966334567899******************************************************************************************97554422213323449**********************************************************************************************************************************************************9999886.69***************************************************************************************998888888877755544332 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   8.4e-09   2.7e-06       6     100 ..      24     115 ..      19     134 .. 0.90
   2 !  134.7   0.0   2.3e-42   7.4e-40     111     404 ..     222     541 ..     197     560 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 8.4e-09
   TIGR02546   6 lgrvtevsgtllkavl.pearvgelclikekekeseleaevvgfeedealLsplgelsglslgseviplgrplsikvgeelLGrvldglGrpldgk 100
                  g + +vsg l+ a    +a++ el+++     +++l  e++ +e d+a ++  +++sgl+ g  v+ +++pls+++g  ++ ++ dg+ rpl++ 
  MMETSP1061-20121228|3974_1  24 YGYIFKVSGPLVVAEGmSGAAMYELMRVG----HQKLVGEIIKLEGDTASIQVYEDTSGLTVGDPVLRKKQPLSVELGPGIMESIFDGIQRPLETI 115
                 688999*****999861579999999999....6899********************************************************975 PP

  == domain 2    score: 134.7 bits;  conditional E-value: 2.3e-42
   TIGR02546 111 rpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstLlsmiargakadvivlaLiGeRGRevrefiek....el......geek....rkrsvlvvstsdrsslerlkaayvataiaeyfRdqgkkvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGa.......sekGsitalYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlkkv......vskehkkaaaklrellakykevellirl.GeYkkGsdkeaDkaikkldeik.kflrqs 404
                 +p+++ p +  ++ + +qpl++G+r+iD+l     G    + ++ G+Gk+ + +++ + +++d i+ +  GeRG e+ e + +    ++      g+e     +kr+ lv++ts+ +   r  + y+++++aeyfRdqg +v ++ Ds +R+a alrei+   Ge pa  gyp+ + ++l+ + eRaG          +G++  + +v   g d +dp++  + si+     L +kla+r+h+P+++ l s s+ ++ +      ++++     +++ ++l++  +++ +++l G+    +d+++   ++  + i+ +fl q+
  MMETSP1061-20121228|3974_1 222 WPVRR-PRPIAEKLPGNQPLITGLRVIDALFPSVLGGTCAVPGAFGCGKTVISQSLSKFSNSDAIIYVGCGERGNEMAEVLADfpelTMtvtdpdGSERevgiMKRTALVANTSNMPVAAREASIYTGITLAEYFRDQGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRvkclgspDREGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYSKYMQVLepffngMDEQYSTLRETAMNILQQEDNLQEIVQLvGKESLSEDQKVI--MEVAKLIReDFLAQN 541
                 45544.44455677789***********************************************************99976432221332222211221233389***********************************************************************************73222222458*********************************************************98833222223444444555667788888888888752555555554443..333333431566666 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0     5e-10   1.6e-07      22     119 ..      22     115 ..       8     125 .. 0.86
   2 !  124.0   0.0   4.6e-39   1.4e-36     142     429 ..     235     549 ..     198     559 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 5e-10
   TIGR01026  22 kvvGrvkkvkgllieakgpq.asvGevclierkgsekkevvaevvgfegekvllmpyeevegveagskvlaknealsvkvgegllGrvldalGkplDek 119
                 + +G + kv g l+ a+g++ a++ e++++      ++++v+e++ +eg++ ++  ye+++g+++g+ vl k+++lsv++g g++  + d++ +pl++ 
  MMETSP1061-20121228|3974_1  22 ADYGYIFKVSGPLVVAEGMSgAAMYELMRVG-----HQKLVGEIIKLEGDTASIQVYEDTSGLTVGDPVLRKKQPLSVELGPGIMESIFDGIQRPLETI 115
                 57999********999998724555555555.....3459******************************************************99875 PP

  == domain 2    score: 124.0 bits;  conditional E-value: 4.6e-39
   TIGR01026 142 kieevlstGvrsidalltvgkGqrlGifaGsGvGkstLlGmiarateadvnvialiGerGrevkefiek....dL......geeg....lkrsvvvvatsDespllrlkgayvataiaeyfrdqGkdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraG.......asekGsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllkaivs..eekkkavrkfre.llskykenedLiriGaY.kkGsdkelDkaikklekl..erflkqdieekvnfe 429
                 + ++ l tG r+idal++   G    +    G Gk ++   +++ +++d ++    GerG e+ e +++    ++      g+e+    +kr+ +v+ ts+ +  +r  + y+++++aeyfrdqG +v ++ Ds  r+a+a rei+  +Ge Pa  Gy+    + l+++ eraG          +G++  + +v   G D+++P++ ++ +i+     L+++la+r+++P+++ l s s+ ++ + +  + + ++ +++re ++ +++++++L +i +   k s  e  k+i +++kl  e+fl+q++  ++++ 
  MMETSP1061-20121228|3974_1 235 PGNQPLITGLRVIDALFPSVLGGTCAVPGAFGCGKTVISQSLSKFSNSDAIIYVGCGERGNEMAEVLADfpelTMtvtdpdGSERevgiMKRTALVANTSNMPVAAREASIYTGITLAEYFRDQGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGrvkclgsPDREGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYSKYMQVLEPffNGMDEQYSTLREtAMNILQQEDNLQEIVQLvGKESLSEDQKVIMEVAKLirEDFLAQNAFTEFDYT 549
                 3355689********************9999******************999999*******9887654221122223222444355568999*********************************************************************************644333224689********************************************************998653344555555555523455555555555544313444455567888888883356****999988885 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.6e-07   0.00018       2      93 ..      26     113 ..      25     135 .. 0.85
   2 !  124.2   0.0   3.7e-39   1.2e-36     116     383 ..     232     525 ..     202     552 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.6e-07
   TIGR03498   2 rvsevkgllvevaGlsaavrlGdlveieaeegkkvlaevvgleedevllmpfeslegvelgaavvveeealevrpeeswlGRvidalgepiD 93 
                  + +v+g lv ++G+s a    ++ e+ + +++k+++e+++le+d+++++ +e+++g  +g+ v+ ++++l+v++ + ++  + d + +p++
  MMETSP1061-20121228|3974_1  26 YIFKVSGPLVVAEGMSGA----AMYELMRVGHQKLVGEIIKLEGDTASIQVYEDTSGLTVGDPVLRKKQPLSVELGPGIMESIFDGIQRPLE 113
                 566777777777777776....4455555566789******************************************999999999999986 PP

  == domain 2    score: 124.2 bits;  conditional E-value: 3.7e-39
   TIGR03498 116 sRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstllsmlaraaaaDvvvialvGeRGRevrefled....dl......geeg....lkrsvvvvatsDesplmRrkaayvalaiaeyfRdqgkdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGp....G.aegkGsitglftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRlakkv......lspeekklvkrlrallaryeetedlirl.GayrkGsdaev 383
                 ++   +++l tG+rvid++ +  +G    +    G Gk+++   l++ ++ D+++    GeRG e+ e+l d    ++      g+e+    +kr+ +v  ts+ ++ +R+ + y+ +++aeyfRdqg +v ++ Ds  R+a+a Rei+   ge p+  GY++   + l    eRaG     G  + +G+++ + +v   g d+ +Pv+ a+ +i+     ld+++a+r ++P++n l s s+ ++        ++++  +l + + ++l++ ++ +++++l G     +d++v
  MMETSP1061-20121228|3974_1 232 EKLPGNQPLITGLRVIDALFPSVLGGTCAVPGAFGCGKTVISQSLSKFSNSDAIIYVGCGERGNEMAEVLADfpelTMtvtdpdGSERevgiMKRTALVANTSNMPVAAREASIYTGITLAEYFRDQGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRvkclGsPDREGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYSKYMQVLepffngMDEQYSTLRETAMNILQQEDNLQEIVQLvGKESLSEDQKV 525
                 55566899**********************************************************9998765533332222222332445589999********************************************************************************63333534679*******************************************************998542222113444445555566666666677776654144444444444 PP

>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.031       9.7      25      98 ..      45     113 ..      23     125 .. 0.74
   2 !  139.6   0.0   8.7e-44   2.8e-41      89     442 ..     202     577 ..     195     592 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.031
   TIGR01039  25 iydalkvklekeseelvlevaqhlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepid 98 
                 +y+ ++v +    ++lv e+ +  Gd        + t Gl+ g  v  +++p++v +G  ++  i++ +  p++
  MMETSP1061-20121228|3974_1  45 MYELMRVGH----QKLVGEIIKLEGDTA-SIQVYEDTSGLTVGDPVLRKKQPLSVELGPGIMESIFDGIQRPLE 113
                 444444443....367888877666654.45557899*****************************99888776 PP

  == domain 2    score: 139.6 bits;  conditional E-value: 8.7e-44
   TIGR01039  89 ilnvlGepidekgevkkkeklsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGktvliqelinniakehsGlsvfaGvGertreGndlylelkesg..vld............kvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqeritstk.......kgsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsr...lldpevvG.eehyevarev.qeilqrykelqdiiailGldelseedklvverarkie.rflsqpffvaevftGspGkyvklkdtiegfkeileGkyddlp 442
                 +++v  e+ +++ ++  ++ +++ r  p  e++  ++  l tG++vid l p + GG  ++ G  G Gktv+ q l +    + s   +++G Ger  e  ++  ++ e +  v d            ++alv    n p  ar    +tg+tlaeyfrd+   +v ++ d   r+++a  e+s  lG +p+  Gy   l+  +  + er    k       +g+++ v av  p  d++dp  a+t++ ++    l++k+a+   +p+++ l s s+   +l+p + G +e y++ re   +ilq+  +lq+i+ ++G + lse++k+++e a+ i+  fl+q+ f    +t    k+v + + i +f ++ +    d p
  MMETSP1061-20121228|3974_1 202 VMEVFNESTNTTHKLTLSHFWPVRRPRPIAEKLPGNQ-PLITGLRVIDALFPSVLGGTCAVPGAFGCGKTVISQSLSKF---SNSDAIIYVGCGERGNEMAEVLADFPELTmtVTDpdgserevgimkRTALVANTSNMPVAAREASIYTGITLAEYFRDQGM-NVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRVKclgspdrEGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYSKymqVLEPFFNGmDEQYSTLRETaMNILQQEDNLQEIVQLVGKESLSEDQKVIMEVAKLIReDFLAQNAFTEFDYTCPLVKTVGMLKVIITFYNLSQKAIADSP 577
                 7999999999***************999888777665.577*******************************9998763...45667899*********999987765533113346777777777769*******************************765.9******************************************999765432222222899**************************************************9973225789999945789998875279**********************************636********************999999999888776665555 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-06   0.00036       2      93 ..      26     115 ..      25     136 .. 0.83
   2 !  124.6   0.0   3.1e-39   9.7e-37     113     402 ..     232     546 ..     200     555 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-06
   TIGR03496   2 kltkvaglvleavgl.kasvgelveieeeegesveaevvgfeeeklllmpleeveglalgakvvlleeekklpvgeellGrvidalgepldgk 93 
                  + kv+g ++ a+g+  a++    e+++   +++ +e++++e++++ +  +e+++gl++g+ v+ +++  ++++g  ++  ++d+  +pl+  
  MMETSP1061-20121228|3974_1  26 YIFKVSGPLVVAEGMsGAAMY---ELMRVGHQKLVGEIIKLEGDTASIQVYEDTSGLTVGDPVLRKKQPLSVELGPGIMESIFDGIQRPLETI 115
                 566777777777776223333...44445778999******************************************************9865 PP

  == domain 2    score: 124.6 bits;  conditional E-value: 3.1e-39
   TIGR03496 113 krerieevldvGvrainalltvgkGqrlglfagsGvGKsvLlgmlarateadvvvvaLiGERgREvkefiek....nLg...eeg.......lkrsvvvaatadespllrlraaalataiaeyfrdqgkdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGng.....kegkGsitafytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvmkkv..vseehlkaarklkql.lsryeenrdlisigaYkkGsdpelDeai.klvpkl..ekflqqeveekv 402
                 ++ + +++l +G+r+i+al++   G   ++  + G GK+v+   l + ++ d ++    GERg E+ e + +    +++   ++g       +kr+ +va t++ +   r  + ++ +++aeyfrdqg +v ++ DS +R+A+A Rei+  +GE pa  gYp+   a+l+++ EraG+       +++G+++ + +v   g d +dp++ a+ +i+     L+++la++ h+P+++ + S S+ m+ +  + +   ++ ++l+++ +  ++++ +l +i   +  +  + D+ +   v kl  e+fl q++ +++
  MMETSP1061-20121228|3974_1 232 EKLPGNQPLITGLRVIDALFPSVLGGTCAVPGAFGCGKTVISQSLSKFSNSDAIIYVGCGERGNEMAEVLADfpelTMTvtdPDGserevgiMKRTALVANTSNMPVAAREASIYTGITLAEYFRDQGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRVkclgsPDREGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYSKYMQVLepFFNGMDEQYSTLRETaMNILQQEDNLQEIVQLVGKESLSEDQKViMEVAKLirEDFLAQNAFTEF 546
                 55677899***********************************************999*******998776433113322222332233344789999*******************************************************************************97333334789*******************************************************998652223444555566665414455666666666555544444444433122333223567777766655 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.9e-07     6e-05       1      92 [.      25     114 ..      25     136 .. 0.90
   2 !  118.2   0.0   2.9e-37   9.3e-35     112     398 ..     231     544 ..     193     561 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.9e-07
   TIGR03497   1 Gkvkkvvglvieakgp.kakiGelcsikkkeekkvlaevvgfkeekvlLmPleevegiapgslveatgkklavkvgkellGkvldglGeplde 92 
                 G + kv+g ++ a+g+  a++ el+++   +++k++ e++ ++ +++ +  +e+++g++ g+ v  ++++l+v+ g  ++  ++dg+ +pl+ 
  MMETSP1061-20121228|3974_1  25 GYIFKVSGPLVVAEGMsGAAMYELMRV---GHQKLVGEIIKLEGDTASIQVYEDTSGLTVGDPVLRKKQPLSVELGPGIMESIFDGIQRPLET 114
                 678899********9945788999999...7899********************************************************985 PP

  == domain 2    score: 118.2 bits;  conditional E-value: 2.9e-37
   TIGR03497 112 lkrkrikdvlevgvkaidglltvGkGqrvGifagsGvGkstllgmiarnakadinviaLvGerGrevrefiek....dLg...eeG.......lkksvvvvatsdqpallrlkaalvataiaeyfrdqGkkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGk.......sekGsitglytvLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvmeeivs..eehkelaeklrel.lavykeaedlikigaykkgs..nkkideaiekkeki.nkfLkqkide 398
                  ++ + +++l +g+++id+l+    G    +  + G Gk+++   +++ +++d  +    GerG e+ e +       ++   ++G       +k++ +v+ ts++p   r  + ++++++aeyfrdqG +v +m Ds  r a+a re++   ge P+  Gy + + + l+ + eraG+       + +G++  + +v   g d+ +P++ a  +i+     L+++La+++h+P+++ l s s+ m+ + +  +   e+ ++lre+ +++ +++++l +i + +     ++  +  +e+ + i ++fL q+   
  MMETSP1061-20121228|3974_1 231 AEKLPGNQPLITGLRVIDALFPSVLGGTCAVPGAFGCGKTVISQSLSKFSNSDAIIYVGCGERGNEMAEVLADfpelTMTvtdPDGserevgiMKRTALVANTSNMPVAAREASIYTGITLAEYFRDQGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRvkclgspDREGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYSKYMQVLEPffNGMDEQYSTLRETaMNILQQEDNLQEIVQLVGKEslSEDQKVIMEVAKLIrEDFLAQNAFT 544
                 3555668899********************************************99999*******88765422211332223344333334568899*******************************************************************************97433332346899999999999**********************************************98865334555666666664266667776676666654333112222222333333424577776654 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00056      0.18      20      92 ..      43     113 ..      25     124 .. 0.83
   2 !  112.1   0.0   1.9e-35   5.9e-33      83     420 ..     202     561 ..     194     584 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00056
   TIGR03305  20 palysvlkagrekevvvevlaqldakkvrgialtateglargmavkdsgaplkapvgkeilsrvfdvfgntid 92 
                  a+y ++++g+ +++v e++ +l+ ++        t gl+ g++v    +pl + +g  i+  +fd + ++++
  MMETSP1061-20121228|3974_1  43 AAMYELMRVGH-QKLVGEII-KLEGDTASIQVYEDTSGLTVGDPVLRKKQPLSVELGPGIMESIFDGIQRPLE 113
                 58999999995.56666765.78888888889999******************************98877776 PP

  == domain 2    score: 112.1 bits;  conditional E-value: 1.9e-35
   TIGR03305  83 vfdvfgntidrreslkdvkwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihnlvsqeegvslfcgigercregeelyrem..............keagvldntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeri.......attedaaitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstskla...tpsivg.erhyklare.vrrvlaqyeelkdiiamlgleelskedrrvvararrl.erfltqpfftteqftglkgktvsleda 420
                 v++vf ++ ++ ++l+  ++  v+  p  ++++    + ++tg+++id l p   gg   + g  g gktv+   l +   s+ +   ++ g ger  e  e+  ++              +e g++++t +v    n p  ar    ++ +t+aeyfrd +  +v ++ d   r+ +a  e+sg lg++p+  gy   lg+ la++ er        +  +++++  + av  p  df+dp +  t+s +     l +k a    +p+++ l s sk +   +p   g +  y++ re   ++l q ++l++i+ ++g e ls++++ +++ a+ + e fl+q  ft  ++t    ktv + + 
  MMETSP1061-20121228|3974_1 202 VMEVFNESTNTTHKLTLSHFWPVR-RPRPIAEKLPGNQPLITGLRVIDALFPSVLGGTCAVPGAFGCGKTVISQSLSK--FSNSD-AIIYVGCGERGNEMAEVLADFpeltmtvtdpdgseREVGIMKRTALVANTSNMPVAAREASIYTGITLAEYFRD-QGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAgrvkclgSPDREGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYSKYMqvlEPFFNGmDEQYSTLREtAMNILQQEDNLQEIVQLVGKESLSEDQKVIMEVAKLIrEDFLAQNAFTEFDYTCPLVKTVGMLKV 561
                 678888888888877777777775.68889999999999********************************8777654..34444.45999********9998766422233444444444679***********************************7.6789********************************************9722222223356899***************************************************986522157776644567766651678999******************9888888877765588************9999998887665 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.5e-07     8e-05       2      95 ..      24     113 ..      23     124 .. 0.91
   2 !   90.0   0.0   7.7e-29   2.4e-26     196     416 ..     319     544 ..     292     562 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.5e-07
   TIGR01041   2 yktiteikGplvlvekveevaydeiveielpdGekrrGqvldsseglvvvqvfegttgldkeatkvrflGetlklkvsedllGrilngsGepid 95 
                 y  i +++Gplv++e+++++a  e++++     +k  G++++ + + + +qv+e t+gl+     v    + l +++   ++  i++g+ +p++
  MMETSP1061-20121228|3974_1  24 YGYIFKVSGPLVVAEGMSGAAMYELMRVGH---QKLVGEIIKLEGDTASIQVYEDTSGLTVGDP-VLRKKQPLSVELGPGIMESIFDGIQRPLE 113
                 77899********************99864...5679***********************9998.7778899****************999986 PP

  == domain 2    score: 90.0 bits;  conditional E-value: 7.7e-29
   TIGR01041 196 ektGaleravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvkG.....kkGsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlmk..dGiGeGktredhkdvsdqlyaayaegrdlrdlvaivGeealserdrkylkfadefekkfvkqgrke 416
                 ++ G ++r++++ n ++ p   r  +  + +t+aey+  ++++ v ++    + ++ealreis    e+p   Gyp yl + la++yeraGrvk      ++G+++ +  ++ p+ d + p+   t  i +    l+++l ++  +p +n l s s+ m+  +   +G   e+++ + +       +  +l+++v +vG+e+lse ++  ++ a+   + f++q   +
  MMETSP1061-20121228|3974_1 319 REVGIMKRTALVANTSNMPVAAREASIYTGITLAEYFR-DQGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRVKClgspdREGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYSKYMQvlEPFFNGM-DEQYSTLRETAMNILQQEDNLQEIVQLVGKESLSEDQKVIMEVAKLIREDFLAQNAFT 544
                 57899*******************************96.99***9988877889***************************************94445559**********************************************************8445566665.57899999999******************************************98655 PP

>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.8e-06    0.0012       2      95 ..      24     113 ..      23     124 .. 0.84
   2 !   86.6   0.0     9e-28   2.8e-25     206     429 ..     320     548 ..     314     571 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.8e-06
   TIGR01040   2 yktvsgvngplvildevkfpkfaeivnlkladgtvrkgqvlevsgekavvqvfegtsgidakkttveftgdilrlpvsedmlgrvfngsgkpid 95 
                 y  +  v+gplv+ + +  + + e++++     ++  g++++++g+ a +qv+e tsg+ +   ++    + l + +   ++  +f+g  +p++
  MMETSP1061-20121228|3974_1  24 YGYIFKVSGPLVVAEGMSGAAMYELMRVG---HQKLVGEIIKLEGDTASIQVYEDTSGLTVGDPVLR-KKQPLSVELGPGIMESIFDGIQRPLE 113
                 677899*************9999998774...56779**********************99877665.45677888888888888888777765 PP

  == domain 2    score: 86.6 bits;  conditional E-value: 9e-28
   TIGR01040 206 engslervtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrveg.....rngsitqipiltmpnddithpipdltgyitegqiyvdrqlhnrqiyppinvlpslsrlmk..saigegmtrkdhsdvsnqlyakyaigkdvaamkavvgeealssedllyleflekfekkfiaqgayesrti 429
                 e g ++r++l  n +n p   r  +    +t aey+  ++++ v ++    s +a+alre+s    e+p+  g+p y+ + la+ yeragrv+      r+g+++ +  ++ p  d + p+   t  i +    +d++l +r+ +p +n l s s+ m+      +gm  +++s + +         ++++ +  +vg+e+ls+++++ +e  + + ++f+aq+a+ + + 
  MMETSP1061-20121228|3974_1 320 EVGIMKRTALVANTSNMPVAAREASIYTGITLAEYFR-DQGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPAYLGARLAAFYERAGRVKClgspdREGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYSKYMQvlEPFFNGMD-EQYSTLRETAMNILQQEDNLQEIVQLVGKESLSEDQKVIMEVAKLIREDFLAQNAFTEFDY 548
                 789********************************97.668889888888999***************************************84445559*************************999988888************************93345778886.5689999999999999999***********************************9987665 PP

>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.5e-05    0.0048      20     115 ..      17     113 ..      11     123 .. 0.91
   2 !   49.8   0.0   1.5e-16   4.8e-14     135     365 ..     230     473 ..     202     478 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.5e-05
   TIGR00962  20 keieaeevGtvvsvadGiakveGlenvlskeliefegg.vkgialnleedsvGvvilGdyseikeGsevkrtgevlevpvGdallGrvvnalGepid 115
                 +e + ++ G + +v+  ++  eG++ + ++el+ + ++   g ++ le d+  + +  d+s +  G+ v r ++ l+v +G +++  + + + +p++
  MMETSP1061-20121228|3974_1  17 NEEKEADYGYIFKVSGPLVVAEGMSGAAMYELMRVGHQkLVGEIIKLEGDTASIQVYEDTSGLTVGDPVLRKKQPLSVELGPGIMESIFDGIQRPLE 113
                 56678899**************************976516799**********************************************99999876 PP

  == domain 2    score: 49.8 bits;  conditional E-value: 1.5e-16
   TIGR00962 135 vierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaidtiinqkdskkdvkcvyvaiGqkestvaqvvekl..............eekgaleytivvaasasdsaslqylaPyagvalaeyfrdkgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrl...leraaklsde...kGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvs 365
                 + e+   ++Pl tG++ idal+P   G    + G    Gkt ++    +++ +++     +yv  G +   +a+v+  +              +e g ++ t +va +++ + + +  + y+g++laeyfrd+g+++ ++ d  s+ a+a r++s  l   P    yP    yl +rl    era +++       +G+++ +  +    gd s  + +  +si      l+ +l ++   P++n  +s s
  MMETSP1061-20121228|3974_1 230 IAEKLPGNQPLITGLRVIDALFPSVLGGTCAVPGAFGCGKTVISQ--SLSKFSNS--DAIIYVGCGERGNEMAEVLADFpeltmtvtdpdgseREVGIMKRTALVANTSNMPVAAREASIYTGITLAEYFRDQGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPA---YLGARLaafYERAGRVKCLgspDREGTVSVVGAVSPPGGDFSDPVTAATLSIVQVFWGLDKKLAQRKHFPSLNWLISYS 473
                 55677789*********************************8764..34444423..35699999999999999986432222222322222245689**********************************************************************7...77777633379**998643222566888899999999999999999999999866666788888888888888777776 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   2.4e-05    0.0074      27     117 ..      23     114 ..      17     128 .. 0.92
   2 !   46.7   0.0   1.3e-15   4.1e-13     115     288 ..     210     394 ..     197     414 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.4e-05
   TIGR03324  27 evGtvesvskGiakvsGlpgvgveellkfpG.dllGiafnvdedevGvvllgeysklqaGdevertgrvldvpvGdellGrvvdplGrpldg 117
                 + G + +vs  +   +G+ g+ + el+++    l+G  ++++ d   + ++++ s l+ Gd v r ++ l v +G +++  + d + rpl++
  MMETSP1061-20121228|3974_1  23 DYGYIFKVSGPLVVAEGMSGAAMYELMRVGHqKLVGEIIKLEGDTASIQVYEDTSGLTVGDPVLRKKQPLSVELGPGIMESIFDGIQRPLET 114
                 578999999999999*************9762578******************************************************986 PP

  == domain 2    score: 46.7 bits;  conditional E-value: 1.3e-15
   TIGR03324 115 ldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGktaiaidtilnqkdknvlcvycaiGqrasavakvvael..............rekgaldytivvvtegndppGlqyiapyaatsiaeyfmeqGrdvlivyddltkharayrelslllrrppGreafpG 288
                  ++ ++l+ s+  p+ rp p i ++ p  +pl tGl+v+dal p   G    + G    Gkt i+    l +  +    +y   G+r   +a+v+a++              re g ++ t  v    n p   +  + y+  ++aeyf +qG +v ++ d  ++ a a re+s  l   p    +p 
  MMETSP1061-20121228|3974_1 210 TNTTHKLTLSHFWPVRRPRP-IAEKLPGNQPLITGLRVIDALFPSVLGGTCAVPGAFGCGKTVISQ--SLSKFSNSDAIIYVGCGERGNEMAEVLADFpeltmtvtdpdgseREVGIMKRTALVANTSNMPVAAREASIYTGITLAEYFRDQGMNVSMMADSTSRWAEALREISGRLGEMPADSGYPA 394
                 55667788889999999975.99***************************************9874..3555555555699999**********99753334455555555578899**********************************************************9999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.56
# Mc/sec: 1470.40
//
Query:       MMETSP1061-20121228|3979_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-23   79.0   0.0    1.2e-22   78.4   0.0    1.2  1  TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit


Domain annotation for each model (and alignments):
>> TIGR04171  RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   2.9e-26   1.2e-22      16     304 ..     126     406 ..     120     416 .. 0.80

  Alignments for each domain:
  == domain 1    score: 78.4 bits;  conditional E-value: 2.9e-26
   TIGR04171  16 evwekllkqfWldeeiplsnDlksWk.elseeekelvkkvltgLtlLDtlqsevGmpaliesveteqekavlnniafmeavHAksYssifstllstee.idelfeWveenealqkkaelilevYeeledpellkakvasvllesfLfYsgFylPlylagqgklt.nsaeiiklilrDesiHgvyvglkaqelleklseeeqeelkkevlelleelyeneekyteel..Ydevglted.vkkfvrYnankalmnlGfealfeeeaeevnpv.vlnglstetknhDfFskkgngYklg 304
                 +++++ ++ fW+ +ei ls Dl++W+ +l+++ek+ ++ vl+  +  D +  e+ ++ + ++v+ ++ +  + +  +me++H   Y  +  t++++ +  + lf+  ++ ++++kka+  + +Y   +d +  ++ va + +e++ f+sg +  +y++ +  l+   +   +li rDe +H  +   ++ +l ++++e+        +++l+ e +e e++++ +    + +g+++  + +++++ a++ l  lG+ +lf ++    np   +  +s e k+ +fF k+   Y++ 
  MMETSP1061-20121228|3979_1 126 SMYKQHVASFWTADEIDLSADLTDWQeNLTKNEKHFISMVLAFFAGADGIVVENLAERFCRDVTVPEARCFYGFQMAMESIHQETYCLLIDTYITNPKdRELLFSAHTRVPSVEKKAKWAQ-RYIG-SDASFAERLVAFAAVEGI-FFSGAFCSIYWLKKRGLMpGLTFSNELISRDEGLHCSFACQLYSKLERRMKEQ-------DIHKLIGEAVEVEKEFVCDAlpVSLIGMNKSlMAQYIEFVADRLLGDLGYRPLFGSK----NPFdWMDMISLEGKT-NFFEKRVGEYQKS 406
                 589**********************846*****************************************************************9987615667888889999999988765.5666.466699999**9999996.77888888888776655505555567999*********998887776666654.......45667777777777776544123557887762568*********************9....776246666666654.6888888888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 1572.87
//
Query:       MMETSP1061-20121228|3982_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1932.46
//
Query:       MMETSP1061-20121228|3985_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 194.84
//
Query:       MMETSP1061-20121228|3983_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    9.6   8.9       0.39    8.9   6.2    1.3  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   6.2   9.6e-05      0.39      19      47 ..      44      72 ..      40      78 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 9.6e-05
   TIGR02811 19 avgaaagavaaatgrvasasaaaepsepe 47
                a++ aa+a+aaat+++  a++ a ++++e
  MMETSP1061-20121228|3983_1 44 AAAEAASAAAAATTTTTTATESATTTSQE 72
                67777777777777777777777776653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 677.94
//
Query:       MMETSP1061-20121228|3986_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.46
# Mc/sec: 1509.27
//
Query:       MMETSP1061-20121228|3984_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 2111.83
//
Query:       MMETSP1061-20121228|3987_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 625.51
//
Query:       MMETSP1061-20121228|3992_1  [L=738]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066   10.5   0.1       0.11    9.8   0.0    1.2  1  TIGR01475 ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase


Domain annotation for each model (and alignments):
>> TIGR01475  ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   2.6e-05      0.11      28      89 ..     303     367 ..     281     374 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2.6e-05
   TIGR01475  28 aakllislkklililvalvsaRtaamavnrlideeiDakNP...RtknrelvsGkiskkeavtli 89 
                 a++++++ +k+i+ ++ +v+a  ++m    l d ++   NP   R   +++vs  isk+e + +i
  MMETSP1061-20121228|3992_1 303 AISKYVTARKVIFLVIGAVVAIGFGMGLYLLKDSQFQIVNPvndRNEGKQIVSSIISKAEITDII 367
                 4556999*****************************999998889999***********998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.11s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 1987.92
//
Query:       MMETSP1061-20121228|3990_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-57  191.9   0.0    5.3e-57  191.4   0.0    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
      6e-54  181.4   0.1      9e-54  180.8   0.0    1.1  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.3e-44  150.7   0.1    1.7e-44  150.3   0.1    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    3.6e-36  122.8   0.0    4.8e-36  122.3   0.0    1.1  1  TIGR03689 pup_AAA: proteasome ATPase
    3.6e-07   26.9   0.0      5e-07   26.5   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    5.5e-06   23.4   0.0    6.8e-06   23.1   0.0    1.2  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
      8e-06   22.9   0.0    1.2e-05   22.3   0.0    1.3  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    9.4e-06   22.0   1.4      0.001   15.3   0.0    2.4  3  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
    0.00024   17.3   0.1      0.021   10.8   0.0    2.2  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    0.00042   17.8   0.0     0.0084   13.6   0.0    2.2  2  TIGR01351 adk: adenylate kinases
    0.00076   16.3   0.0       0.16    8.6   0.0    2.2  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00099   16.5   0.0     0.0021   15.5   0.0    1.5  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0016   14.8   0.0     0.0027   14.1   0.0    1.2  1  TIGR00763 lon: ATP-dependent protease La
     0.0026   14.5   0.1       0.26    8.0   0.1    2.2  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
  ------ inclusion threshold ------
      0.014   11.7   0.0       0.03   10.6   0.0    1.5  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
      0.016   11.3   0.0       0.44    6.5   0.0    2.2  2  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
      0.018   11.5   0.0      0.048   10.0   0.0    1.6  2  TIGR00764 lon_rel: putative ATP-dependent protease


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.4   0.0   2.2e-59   5.3e-57     436     725 ..     107     438 ..      90     444 .. 0.75

  Alignments for each domain:
  == domain 1    score: 191.4 bits;  conditional E-value: 2.2e-59
   TIGR01243 436 epsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaa..paiifldeidaiapargadlseavtdrivnqllteldgleens.dvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslp..laedvdleelakktegytgadieavvreaalaalresv..........................................ksvakekleaeekeilkdlkvkkkdflealkkvkpsvskedlrvyekl 725
                 + ++   ++ e p++ wed+ gle++k+ l+e+v  p +++++f     +p kg+llfgppgtgk+ lakavate+++ f +v   +++skw gesek +r++f+ ar++    aiif+de+d++  +r + +s+++  r+  ++l ++dg+ +++ +v+v++atn p  ld a+ r  r+++ +++p p+ ear  + k+   + p  l+ed +++++ + teg +gadi+ +v+ea ++ lr++                                             + +  l  +  e l+   v  +df+  +k    svs e+l+++ + 
  MMETSP1061-20121228|3990_1 107 RGALAGAIVQEKPDITWEDVIGLENAKDSLKETVILPTRFPQLFTGK-RKPFKGILLFGPPGTGKSYLAKAVATEADSTFFSVSSADLISKWQGESEKLVRNLFELARESEgeRAIIFIDEVDSLCGSRSEGESDSM-RRVKTEFLVQMDGVGNSKgQVLVLGATNIPWELDAAIRR--RFEKRVYIPLPEAEARTAMVKLNLGDTPneLTED-EFDRVGEITEGSSGADIKILVKEALMQPLRRCQrakqfyvdeegyyhpcdkypncsacppqlssdqkgkdytckrCGAKRMSLWDVPTEKLQAPMVLYEDFKTVMKSSVSSVSPEELKRFTEW 438
                 44555567778999999999999999999999999999999999743.46889999999999999999999999999999999999999999999999999999999987522699999999999999988777664.689999999999998776257889999999999999877..8999999999999999999998876654237777.789999999999999999999999999999877666666666666666666666666666666655555555543222223333444444666677788888888888888888888877665 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.8   0.0   3.7e-56     9e-54     110     348 ..     112     348 ..     100     359 .. 0.90

  Alignments for each domain:
  == domain 1    score: 180.8 bits;  conditional E-value: 3.7e-56
   TIGR01242 110 aleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakeka..psiifideidaiaakrldsstsGdrevqrtllqllaeldGf.dprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrk..mklaedvdleelaklteGasGadlkaivteaGmfaireer 348
                 +  v+e+p++++ed+ Gle+    ++e+v lp + p+lf     +p kG+ll+GppGtGk+ lakava+e+++tf  v +++l+ k+ Ge  +lvr++f+la+e     +iifide+d+++  r + ++   r v+    ++l ++dG  +++g+v v++atn +  ld a+ r  rf++ + +plp+ e r  ++k+       +l+e  +++ + ++teG sGad+k +v ea m  +r+ +
  MMETSP1061-20121228|3990_1 112 GAIVQEKPDITWEDVIGLENAKDSLKETVILPTRFPQLFTGK-RKPFKGILLFGPPGTGKSYLAKAVATEADSTFFSVSSADLISKWQGESEKLVRNLFELARESEgeRAIIFIDEVDSLCGSRSEGESDSMRRVK---TEFLVQMDGVgNSKGQVLVLGATNIPWELDAAIRR--RFEKRVYIPLPEAEARTAMVKLNLGDtpNELTE-DEFDRVGEITEGSSGADIKILVKEALMQPLRRCQ 348
                 5679***********************************864.6899********************************************************8752269**************998888777776...577999***85789*******************98..9******************99986541156777.59**************************999865 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.3   0.1     7e-47   1.7e-44      43     279 ..     111     346 ..      88     358 .. 0.87

  Alignments for each domain:
  == domain 1    score: 150.3 bits;  conditional E-value: 7e-47
   TIGR01241  43 aklleeekvkvtfkdvaGideakeelveivdfLknpkkftkl..GakiP.kGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakkna..PciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetneg.vivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvkla.eevdlkkvarrtpGfsGadlanlvneaallaark 279
                 a ++ +ek+ +t++dv G+++ak+ l+e v     p++f +l  G + P kG+ll GpPGtGk  lakava ea+  ffs+s +d++  + G   + vr+lfe a+++    +iifiDe+D++  +r++g     d   +    +Lv+mDG ++++g v+vl atn p  LD a+ r  rf+++v + +P+ + r++++k+ + ++  + +e + ++v + t G sGad++ lv ea +   r+
  MMETSP1061-20121228|3990_1 111 AGAIVQEKPDITWEDVIGLENAKDSLKETVIL---PTRFPQLftGKRKPfKGILLFGPPGTGKSYLAKAVATEADSTFFSVSSADLISKWQGESEKLVRNLFELARESEgeRAIIFIDEVDSLCGSRSEG---ESDSMRRVKTEFLVQMDGVGNSKGqVLVLGATNIPWELDAAIRR--RFEKRVYIPLPEAEARTAMVKLNLGDTPNElTEDEFDRVGEITEGSSGADIKILVKEALMQPLRR 346
                 44567889********************9864...777777655888887********************************************************8752269**************995...45666677789********98876699**************998..***********************99988774566799********************98876665 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.3   0.0     2e-38   4.8e-36     171     380 ..     113     307 ..      85     348 .. 0.87

  Alignments for each domain:
  == domain 1    score: 122.3 bits;  conditional E-value: 2e-38
   TIGR03689 171 lvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGves.lenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylte 380
                  +++e Pd+t++d+ Gl++  ++++++v lP  +++l++    kp kG+ll+GPPG+Gk  +akava+          ea s f+++   +l++k+ Ge+e+ +r +fe are  +eg+  ++f+de+dsl   r  G s  +   v   +l ++dGv +    v+v+Ga+n    +d ai r  r++ ++ i  P+aea +++++  l +
  MMETSP1061-20121228|3990_1 113 AIVQEKPDITWEDVIGLENAKDSLKETVILPTRFPQLFTGK-RKPFKGILLFGPPGTGKSYLAKAVAT----------EADSTFFSVSSADLISKWQGESEKLVRNLFELARE--SEGERAIIFIDEVDSLCGSRSEGESDSM-RRVKTEFLVQMDGVGNsKGQVLVLGATNIPWELDAAIRR--RFEKRVYIPLPEAEARTAMVKLNLGD 307
                 6899**********************************975.59**********************97..........35689*****************************9..69999******************87655.67999*********751678*****************99..99999999999999988888766654 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.1e-09     5e-07     313     411 ..     158     254 ..      95     287 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.1e-09
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg.....gvlFlDEayaLvek.rdgakddfGleaidtLLarlE 411
                 k +ll GPPGtGk  +A++va         +  +   vs adli+++ gese+   +l + a +      ++F+DE+ +L     +g++d +  +     L++++
  MMETSP1061-20121228|3990_1 158 KGILLFGPPGTGKSYLAKAVATE-------ADSTFFSVSSADLISKWQGESEKLVRNLFELAREsegerAIIFIDEVDSLCGSrSEGESDSMRRVKT-EFLVQMD 254
                 6689****************986.......688999**********************9988653323359*********98746677776654443.4556664 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.8e-08   6.8e-06      28     106 ..     155     243 ..     122     329 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.8e-08
   TIGR00635  28 ealdhvllyGPPGlGkttlakiiakelgvkl.kitsgpalek....pgDlaailtale.....egdvlfiDeihrlskaveellypame 106
                 +    +ll+GPPG Gk  lak +a+e +++   + s+  ++k    ++ l+  l +l      e+ ++fiDe+  l  +  e     m 
  MMETSP1061-20121228|3990_1 155 KPFKGILLFGPPGTGKSYLAKAVATEADSTFfSVSSADLISKwqgeSEKLVRNLFELAresegERAIIFIDEVDSLCGSRSEGESDSMR 243
                 566789*********************987526777777877433234566666666422222467*******9987766665555555 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.1e-08   1.2e-05     119     202 ..     159     239 ..      91     254 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 5.1e-08
   TIGR00382 119 nilliGptGsGktllaqtlakeldvpf.aiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkia.rksenas 202
                  ill Gp G+Gk+ la+++a e d  f +++ a  ++   + Ge  e ++ +l++ a    ++ e+ ii+ide+d ++  +se++s
  MMETSP1061-20121228|3990_1 159 GILLFGPPGTGKSYLAKAVATEADSTFfSVSSADLIS--KWQGE-SEKLVRNLFELARE--SEGERAIIFIDEVDSLCgSRSEGES 239
                 59*********************98761666665554..47787.58999999998864..6899**********98524566554 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1         1   2.5e+02     424     490 ..      43     110 ..      40     140 .. 0.67
   2 !    5.4   0.0    0.0043         1     589     617 ..     151     179 ..     120     185 .. 0.76
   3 !   15.3   0.0   4.2e-06     0.001     244     341 ..     195     297 ..     181     303 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1
   TIGR03346 424 lkkekdeaske.rleklekelaeleeesaeleekwkaekekiekvkkikeelekvklelekakregdl 490
                 lk ek+ea k+  le++e  +++ ee ++ + ++ + +k+   + + +k+  ++  ++ ekak +g l
  MMETSP1061-20121228|3990_1  43 LKYEKNEARKKlVLERVEGYMKRAEELRDYVAKQNELDKNGGGGSAMAKKGDKEEDMDAEKAKLRGAL 110
                 67777777665247888888888888888888888888887777666666655566666666555444 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0043
   TIGR03346 589 sdPnrPigsflflGptGvGktelakalae 617
                 +  ++P+   l++Gp G Gk  laka+a+
  MMETSP1061-20121228|3990_1 151 TGKRKPFKGILLFGPPGTGKSYLAKAVAT 179
                 55689999******************996 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 4.2e-06
   TIGR03346 244 akyrGefeerlkavlkevekseGe.iilfidelhtlvGaGkaeGaldagnllkPal.........arGelhciGattldeyrkyiekdaalerrfqk.vlvdePsvedt 341
                 +k++Ge e+ ++ +++  ++seGe  i+fide+  l G+ ++eG  d+   +k  +         ++G++ ++Gat +       e daa+ rrf k v++  P+ e  
  MMETSP1061-20121228|3990_1 195 SKWQGESEKLVRNLFELARESEGErAIIFIDEVDSLCGS-RSEGESDSMRRVKTEFlvqmdgvgnSKGQVLVLGATNIP-----WELDAAIRRRFEKrVYIPLPEAEAR 297
                 69**************99*****648***********96.789999988777754322223333368899999999986.....699********75388888877765 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0075       1.8     480     510 ..     150     180 ..     123     188 .. 0.83
   2 !   10.8   0.0   8.7e-05     0.021     244     351 ..     185     295 ..     181     304 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0075
   TIGR02639 480 lkeenkPvgsflfvGptGvGktelakqLaee 510
                 ++ + kP    l  Gp G Gk  lak++a+e
  MMETSP1061-20121228|3990_1 150 FTGKRKPFKGILLFGPPGTGKSYLAKAVATE 180
                 667899**********************987 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 8.7e-05
   TIGR02639 244 iysLdlgsllaGtkyrGdfeerlkevveeieke..edailfiDeihtivgagatsggsldasnlLkPal.........asGkirciGsttyeeykkifekdkaLsrrfqk.idveePske 351
                  +s++ ++l+  +k++G+ e+ ++++ e  +++  e ai+fiDe+  + g+ + +++  d    +k  +         ++G++ ++G+t        +e d+a+ rrf+k + ++ P  e
  MMETSP1061-20121228|3990_1 185 FFSVSSADLI--SKWQGESEKLVRNLFELARESegERAIIFIDEVDSLCGSRSEGES--DSMRRVKTEFlvqmdgvgnSKGQVLVLGATN-----IPWELDAAIRRRFEKrVYIPLPEAE 295
                 5666666666..599******99999876554411568**********988776665..4444333322122122222567777777774.....4577888888888653666666555 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0      0.13        32     158     192 ..      46      80 ..      22     100 .. 0.84
   2 !   13.6   0.0   3.5e-05    0.0084       2      36 ..     160     196 ..     159     212 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.13
   TIGR01351 158 qReDDteevvkkRlevYkeqteplieyYkkkgklv 192
                 +++  +++ v +R+e Y +++e l +y +k++ l 
  MMETSP1061-20121228|3990_1  46 EKNEARKKLVLERVEGYMKRAEELRDYVAKQNELD 80 
                 466778899******************99998765 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.5e-05
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklg..lvhistGdllRa 36 
                 ++l+GpPG+GK+  ak +a++ +  ++ +s+ dl+ +
  MMETSP1061-20121228|3990_1 160 ILLFGPPGTGKSYLAKAVATEADstFFSVSSADLISK 196
                 689****************998644889999999865 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00067      0.16      42      65 ..     159     182 ..     148     196 .. 0.87
   2 !    5.4   0.0    0.0061       1.5     114     146 ..     202     236 ..     188     270 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00067
   TIGR02928  42 nvliyGktGtGKtavtkkvlkele 65 
                  +l++G++GtGK+  +k+v  e+ 
  MMETSP1061-20121228|3990_1 159 GILLFGPPGTGKSYLAKAVATEAD 182
                 699***************998876 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0061
   TIGR02928 114 kevfeelvkele.eredsliivLDEiDklv.kkea 146
                 +++ ++l++    ++++ +ii +DE+D+l+ ++++
  MMETSP1061-20121228|3990_1 202 EKLVRNLFELAReSEGERAIIFIDEVDSLCgSRSE 236
                 4566777877764778899**********964433 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.6e-06    0.0021      40     110 ..     159     236 ..     144     298 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.6e-06
   TIGR03420  40 llylwGesgsGksHLLqAacaaaeeagksaiylplkelaqll.....vev....legleqaelvalDdvealagerewee 110
                  + l+G++g+Gks+L +A++++a ++  s+   +l ++ q +      ++     e+  + +++ +D+v++l g+r   e
  MMETSP1061-20121228|3990_1 159 GILLFGPPGTGKSYLAKAVATEADSTFFSVSSADLISKWQGEseklvRNLfelaRESEGERAIIFIDEVDSLCGSR--SE 236
                 578*******************998876665555533332221122224411112334456688899999998887..44 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.1e-05    0.0027     356     385 ..     160     189 ..     119     196 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrls 385
                 + l GPPG GK+ lak++A+  + +f+ +s
  MMETSP1061-20121228|3990_1 160 ILLFGPPGTGKSYLAKAVATEADSTFFSVS 189
                 7799**********************9987 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0086       2.1      48      83 ..     158     193 ..     122     214 .. 0.73
   2 !    8.0   0.1    0.0011      0.26     236     276 ..     207     246 ..     194     261 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0086
   TIGR00390  48 knilmiGstGvGkteiarrlaklaeaPfikveatkf 83 
                 k il+ G+ G Gk+ +a+ +a  a+  f  v ++  
  MMETSP1061-20121228|3990_1 158 KGILLFGPPGTGKSYLAKAVATEADSTFFSVSSADL 193
                 89**********************999999987654 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0011
   TIGR00390 236 eikqeavdrveesGiifideidkiakkgessgadvsreGvq 276
                 ++ + a +   e+ iifide+d ++ +  + ++d  r  v+
  MMETSP1061-20121228|3990_1 207 NLFELARESEGERAIIFIDEVDSLCGSRSEGESDSMR-RVK 246
                 45556666777899***********988665555444.354 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00012      0.03      98     199 ..      55     181 ..       8     192 .. 0.66
   2 ?   -3.1   0.0       1.8   4.3e+02     325     358 ..     263     296 ..     256     304 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00012
   TIGR02903  98 lverqekyl...eeirlqvlkek....kgsensstlkklerlekl..ekkklaksiqsll...rpr.alseivGqeraikallaklasp..fpq..........hiilyGppGvGkttaarlaleea 199
                 + er e y+   ee+r  v k++    +g   s   kk ++ e +  ek kl  +++  +   +p  ++++++G e a  +l   +  p  fpq           i+l+GppG Gk+  a+ +  ea
  MMETSP1061-20121228|3990_1  55 VLERVEGYMkraEELRDYVAKQNeldkNGGGGSAMAKKGDKEEDMdaEKAKLRGALAGAIvqeKPDiTWEDVIGLENAKDSLKETVILPtrFPQlftgkrkpfkGILLFGPPGTGKSYLAKAVATEA 181
                 34666666533357777777764111144455666788899888722567777665543312245447899*******9999988765555998444444443349***********9999887776 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.8
   TIGR02903 325 vliGattrdpeeinpalrsrcaevffepltpedi 358
                 vl+  +t+ p e+++a+r r  +  + pl  ++ 
  MMETSP1061-20121228|3990_1 263 VLVLGATNIPWELDAAIRRRFEKRVYIPLPEAEA 296
                 5555567889**********99888888877765 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.034       8.3     567     618 ..     125     179 ..     113     183 .. 0.72
   2 ?    6.5   0.0    0.0018      0.44     261     310 ..     198     247 ..     195     306 .. 0.68

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.034
   TIGR03345 567 rvvGqdealeaiaerir..tarAgl.edpkkPlgvFllvGpsGvGktetalalAe 618
                  v+G ++a ++++e++   t   +l +  +kP    ll Gp G+Gk   a a+A 
  MMETSP1061-20121228|3990_1 125 DVIGLENAKDSLKETVIlpTRFPQLfTGKRKPFKGILLFGPPGTGKSYLAKAVAT 179
                 5677777777776665311222343267899*9999***********99999985 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0018
   TIGR03345 261 kGeFekRlksvidevkase.kpiilFiDeaHtliGaGgqaGqgDaanllkP 310
                 +Ge ek ++++ + +++se +  i+FiDe+ +l G+  ++G++D+   +k 
  MMETSP1061-20121228|3990_1 198 QGESEKLVRNLFELARESEgERAIIFIDEVDSLCGSR-SEGESDSMRRVKT 247
                 6999*********99999846799***********85.6788888766664 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0002     0.048      39      59 ..     159     179 ..     147     210 .. 0.87
   2 ?   -2.6   0.0       1.3   3.2e+02     524     560 ..     251     290 ..     245     301 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0002
   TIGR00764  39 nvlliGePGvGksmlakamae 59 
                  +ll G PG+Gks laka+a 
  MMETSP1061-20121228|3990_1 159 GILLFGPPGTGKSYLAKAVAT 179
                 689***************984 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.3
   TIGR00764 524 valtGslsvrGevlpvGGvte..kieaaieaGi.kkviiP 560
                 v + G  + +G+vl +G  +    ++aai+  + k+v iP
  MMETSP1061-20121228|3990_1 251 VQMDGVGNSKGQVLVLGATNIpwELDAAIRRRFeKRVYIP 290
                 5677888889****99987642278899998885678887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.54
# Mc/sec: 1092.58
//
Query:       MMETSP1061-20121228|3991_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.72
# Mc/sec: 672.78
//
Query:       MMETSP1061-20121228|3993_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-07   27.8   0.0    6.4e-07   26.9   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0021   13.7   0.0     0.0038   12.9   0.0    1.3  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.1e-10   6.4e-07      84     137 ..     195     248 ..     177     269 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 3.1e-10
   TIGR03724  84 lkdlleekelellkevGelvgklHkagivhgDlttsNiivkddklyliDfGLgk 137
                  +  +e++   l++e+ e +  lH++gi h Dl  +Ni++++++ ++iD+G + 
  MMETSP1061-20121228|3993_1 195 NRRFTENEARPLFREMVEGLQFLHRKGISHRDLSIENILIENNSSIIIDMGQAI 248
                 5555666666899*************************************9775 PP

>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.9e-06    0.0038      84     192 ..     206     331 ..     198     344 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.9e-06
   TIGR03903  84 LmlqvLDalaaahdaGvvhRDLkPqnimvsaa.....dveshakv.....LDFGigaLlpgved.....adeatltrttevlGsPaYaaPe..qLRgepvtaksDlYaWGLivleCLtGkrvvqGa 192
                 L   ++++l   h++G+ hRDL  +ni++ ++     d+ +  +v     L+ G++ + +  +       ++  + + +   G  +Y aPe    R     + +D+++ G i++  LtG +  + a
  MMETSP1061-20121228|3993_1 206 LFREMVEGLQFLHRKGISHRDLSIENILIENNssiiiDMGQAIRVpytdhLNNGVTDIFTANQRrqnrpLERRLVHQRHKPFGKDPYMAPEayDFRLHYDGPSADVWTTGTILFTMLTGCTPYENA 331
                 66778899999*****************97641112233333232222226666665554433201111233344566788899999999944478888899999999999999999997665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.84
# Mc/sec: 622.23
//
Query:       MMETSP1061-20121228|3989_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 2346.47
//
Query:       MMETSP1061-20121228|3994_1  [L=953]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (953 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.11s 00:00:00.52 Elapsed: 00:00:00.40
# Mc/sec: 3144.64
//
Query:       MMETSP1061-20121228|3995_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 2250.95
//
Query:       MMETSP1061-20121228|3998_1  [L=919]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (919 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 2888.05
//
Query:       MMETSP1061-20121228|3997_1  [L=3209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.18u 0.17s 00:00:01.35 Elapsed: 00:00:01.11
# Mc/sec: 3815.79
//
Query:       MMETSP1061-20121228|4002_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1379.50
//
Query:       MMETSP1061-20121228|4001_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1719.63
//
Query:       MMETSP1061-20121228|3999_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1744.55
//
Query:       MMETSP1061-20121228|4003_1  [L=1170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-05   18.3  35.4    0.00013   17.7  24.5    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0054   12.2  37.1     0.0082   11.6  25.7    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.44    6.7   5.7       0.69    6.0   3.9    1.3  1  TIGR00926 2A1704: oligopeptide transporter, peptide:H+ symporter
       0.71    6.9  25.1       0.25    8.4   4.8    2.4  2  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7  24.5   1.2e-07   0.00013     268     936 ..     909    1117 ..     856    1161 .. 0.38

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.2e-07
   TIGR02168  268 eleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleea.eaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleel 936 
                  e+e+l+++++el e+ ++l +e    ++  +++e+ ++ ++++ ++ ++ leel+ q++e+e   +++++ l++l+e+l+ +k+e e+l+++le   +a+++e   +++ ++++lee ++ ++ l+++ ++l++  e++++e ++++e+++rl +++e++ k+l+ ++++ ++l++  ++++  +e+ +  +++l+e l+                                                                   ++++ +A                                                                                                                                                                                                                                                                                                                                                                                                         + +
  MMETSP1061-20121228|4003_1  909 EVEKLKSQQAELIEKRKRLAEERAWKEKLEREKEEAKRAANKEFQKYDDRLEELDGQIKEAE---DRYKDTLKDLKERLKAAKAEEEDLKSRLEGDvKAKAAEPAMQAAMQKTKLEESKKLINFLQKENKKLKSANEKAKKEYKKIQETNARLVESNESAGKSLSLLKNKSDKLSGGSDDVHSNIEKYKGMNAKLREDLKM------------------------------------------------------------------RQEFYTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EAHI 1117
                  22222222222222222222222222222222222222222222222222222222222211...1122222222222222222222222222221011122222222222223333333333333333333333333333333333333333333333333333333333333333333333333333333333333333..................................................................2222222........................................................................................................................................................................................................................................................................................................................................................................................................2222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6  25.7     8e-06    0.0082     280     499 ..     902    1116 ..     854    1146 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8e-06
   TIGR02169  280 kkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieee....kkereklkeelkelkeeleelraele.evdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaq 499 
                  +k+++    e  ++k++ +el  ++++l ++ a ke+  ++ ee ++ a++e +k++ ++eel+++i+e     k   + lke+lk++k+e+e+l+++le +v+++aae   + + +k+kle+ k+ +n l++e+++l       +++ +++k+e ++i+e  a l e+ e++ + ++  ++k  +l+   ++++++++k k   +kl + l+ +++e+  +ea+
  MMETSP1061-20121228|4003_1  902 AKMKA--LKEVEKLKSQQAELIEKRKRLAEERAWKEKLEREKEEAKRAANKEFQKYDDRLEELDGQIKEAedryKDTLKDLKERLKAAKAEEEDLKSRLEgDVKAKAAEPAMQAAMQKTKLEESKKLINFLQKENKKL-------KSANEKAKKEYKKIQETNARLVESNESAGKSLSLLKNKSDKLSGGSDDVHSNIEKYKGMNAKLREDLK-MRQEFYTAEAH 1116
                  33333..34555666777777777777777777777666677777777777777777777777777766411113345567777888888888888887645666777777777777777777777777777544444.......55555555555555555555555555555555555555555555555555555555555555555543.33344444444 PP

>> TIGR00926  2A1704: oligopeptide transporter, peptide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   3.9   0.00068      0.69     400     542 ..     971    1109 ..     935    1150 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00068
   TIGR00926  400 dllskeekesksgieskesskkpngddeldidlsadglagevsklkkevelekkkskvllvsqdglklyevaaktekaktekGelsirlvstlnkeggaialskeesesvednlsvdksekaklyvlepavnleeedkkksat 542 
                  d ++ + k+ k+ ++  +  ++ + ++ l+ d+ a+ + ++++   ++++le+ k+ + +++++  kl +  +k +k+ ++  e+  rlv++ ++ g++++l k++s++++     d  + +  +++   ++   ed k + +
  MMETSP1061-20121228|4003_1  971 DRYKDTLKDLKERLKAAKAEEE-DLKSRLEGDVKAKAAEPAMQAAMQKTKLEESKKLINFLQKENKKLKSANEKAKKEYKKIQETNARLVESNESAGKSLSLLKNKSDKLSGG--SDDVHSNIEKYKGM-NAKLREDLKMRQE 1109
                  3333333344444443333333.45678999*************************************999999999999999*********************999988763..22222222222222.2222333444444 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.6     0.011        12      67     152 ..     909     993 ..     895    1018 .. 0.59
   2 ?    8.4   4.8   0.00024      0.25      67     153 ..    1019    1104 ..    1012    1112 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.011
   TIGR03752  67 elkelrkelaklekeNeklkke...nerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseed 152
                 e+++l++++a+l+++ ++l +e   +e+l++++e+ ++  +++++++  +l++   q ke+ ++ +++l++l+++l+  +a    +eed
  MMETSP1061-20121228|4003_1 909 EVEKLKSQQAELIEKRKRLAEErawKEKLEREKEEAKRAANKEFQKYDDRLEELDGQIKEAEDRYKDTLKDLKERLKAAKA----EEED 993
                 455666666677777776665533345666666666666666666666666666666666666666666666666654443....3333 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00024
   TIGR03752   67 elkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedl 153 
                  +l+e +k ++ l+keN+klk+ ne+ kk+ ++++e+ ++ +e+ ++++ k+ + lk++ +kl++ +d++++++e+ +  +++ +edl
  MMETSP1061-20121228|4003_1 1019 KLEESKKLINFLQKENKKLKSANEKAKKEYKKIQETNARLVES-NESAGKSLSLLKNKSDKLSGGSDDVHSNIEKYKGMNAKLREDL 1104
                  5778899999***********************9987777776.888999999****************999997776666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       452  (0.11019); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.74u 0.20s 00:00:00.94 Elapsed: 00:00:00.66
# Mc/sec: 2339.81
//
Query:       MMETSP1061-20121228|4000_1  [L=1802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1802 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       362  (0.0882496); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.13s 00:00:00.96 Elapsed: 00:00:00.51
# Mc/sec: 4663.61
//
Query:       MMETSP1061-20121228|4004_1  [L=1020]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   38.9   2.9    1.8e-10   38.9   2.0    2.6  2  TIGR00880 2_A_01_02: multidrug resistance protein
    1.9e-05   21.6   0.8    1.9e-05   21.6   0.5    2.9  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
     0.0049   13.5   0.1     0.0049   13.5   0.0    1.7  2  TIGR00898 2A0119: cation transport protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   2.0   1.4e-13   1.8e-10      17     138 ..     188     320 ..     182     323 .. 0.82
   2 !    4.3   5.9    0.0065       8.8      13     103 ..     411     500 ..     402     515 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 1.4e-13
   TIGR00880  17 lsglltdrvGrkpvllvglfifvlsqllfals............snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagial.gpilGpllGavlaqalgwralflilallallafilllfll 138
                 ls  l+d++Grkp+++ + + f+l +ll al+            s+ +vl++a ++ G++ + ++++ +a++ad + +  ++ +lg++  + +  ++il+ ++G++l++ +g +   l++a + l++ ++ + l 
  MMETSP1061-20121228|4004_1 188 LSA-LSDKYGRKPLIVWSSLGFALTNLLQALAgdiaraptapswSSTAVLYLADFVDGCS-SCMSPVCQAYVADCSLPSSLASNLGIFQGISVGgAFILAFPIGGLLGAKFGPKPAILMAAGFQLVNCLIAASLT 320
                 444.888***************************************************97.56678889*******************988775168***********655554444444445555555544444 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0065
   TIGR00880  13 vvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilG 103
                 +++++  +++ r+G +  + +gl++++++   + l+ +++ ++++ ++++fg+ +a++a +al+a +++++e ++ lg + + + l   +G
  MMETSP1061-20121228|4004_1 411 MLAIVPRIMVPRLGLQRSINFGLVTYAIGLSSAGLVATPANFVLSIAIIAFGC-VAIPALQALLANLAPPGESGALLGAVGSLTELTGAIG 500
                 34444555678****************************************98.7889999*****************9988876654444 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.5   1.4e-08   1.9e-05      67     199 ..     182     327 ..     179     350 .. 0.63
   2 ?   -5.7   5.1       2.8   3.8e+03      52     168 ..     399     511 ..     387     516 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.4e-08
   TIGR00895  67 lGal.lfgplaDrigRkrvllvsillfsvftlasalatnv........tqLlvlRflagl..GlGg.llpnliaLvsEyapkrfratvvglvavGyaiGaa..vggllaallipafgWrslflvggiiplllllllikvLpEsikfl 199
                 +G++ ++++l+D++gRk+++++s l f++  l+ ala ++        ++ +++  la    G  + + p + a v++ +     a+ +g+ + G  +G+a  ++  +++ll ++fg +   l+++ + l+  l+ ++  pEs +  
  MMETSP1061-20121228|4004_1 182 FGGIaFLSALSDKYGRKPLIVWSSLGFALTNLLQALAGDIaraptapsWSSTAVLYLADFvdGCSScMSPVCQAYVADCSLPSSLASNLGI-FQGISVGGAfiLAFPIGGLLGAKFGPKPAILMAAGFQLVNCLIAASLTPESNADS 327
                 78884679*****************************987222222222233333444442233331446677777777666666666665.4577777542245557777777777777777777677777777777777776554 PP

  == domain 2    score: -5.7 bits;  conditional E-value: 2.8
   TIGR00895  52 velGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipaf 168
                 ++ G++l   ++G++l a++  ++  r+g +r + +++++ +++   ++l  +  ++++  ++   G   ++p+l aL++  ap    + ++g v +  ++ +a+g+ + a+l+++f
  MMETSP1061-20121228|4004_1 399 AQSGPVLV--MVGLML-AIVPRIMVPRLGLQRSINFGLVTYAIGLSSAGLVATPANFVLSIAIIAFGC-VAIPALQALLANLAPPGESGALLGAVGSLTELTGAIGSSMYATLLSTF 511
                 55555542..456555.666666777777777777777777777777777777777776555544444.246777778888887777777777777777777777776666666666 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   3.6e-06    0.0049     142     178 ..     184     220 ..     170     223 .. 0.89
   2 ?   -2.4   0.4      0.24   3.3e+02     356     394 ..     426     473 ..     363     477 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.6e-06
   TIGR00898 142 GslvlGqlsDrfGRkkvLllstlvtavsgvltafspn 178
                 G ++l+ lsD++GRk ++++s l+ a++++l+a++ +
  MMETSP1061-20121228|4004_1 184 GIAFLSALSDKYGRKPLIVWSSLGFALTNLLQALAGD 220
                 557899***************************9866 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.24
   TIGR00898 356 n........iYldll.isglvelpaklitlllidrLgRrktmaaslll 394
                 +         Y   l   glv  pa+++ +++i  +g     a+  ll
  MMETSP1061-20121228|4004_1 426 QrsinfglvTYAIGLsSAGLVATPANFVLSIAIIAFGCVAIPALQALL 473
                 044445444555444145788999999999888888876666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1020 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.18s 00:00:00.64 Elapsed: 00:00:00.50
# Mc/sec: 2692.58
//
Query:       MMETSP1061-20121228|4005_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.9    7.1  11.8        1.2    6.6   8.2    1.2  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   8.2    0.0003       1.2     132     227 ..      98     213 ..      55     233 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0003
   TIGR03354 132 easeedlddslt.eagegaaprpapqaa...............sldPlkaldqepasaadlddga.......lsaelaeevae.alpadlasidaestlepelaplpaaqpapapqeqeq 227
                  + eed++  l  +++++++p +                    +   ++++d++p++a+d  ++         +++ +++v+e ++p  ++++ +e+  epe++p+p+++p+p+p+  + 
  MMETSP1061-20121228|4005_1  98 PDVEEDVEAPLEgMDTTQKSPAK----KpfsparsirrlfstkNRRKFEENDDDPDTASDSPPSPgpasereSPVAEESPVEEeEEPVVAEETEKEEEPEPEPEPEPEPEPEPEPDVIPT 213
                 33222222222201111222222....022233445555666655566777777777777777664433322233333333333444444445555666666666666666555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1034.62
//
Query:       MMETSP1061-20121228|4006_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-28   95.4   0.0      7e-28   95.1   0.0    1.1  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    2.7e-15   54.2   0.0    3.4e-15   53.9   0.0    1.1  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    5.4e-09   33.6   0.0    4.5e-08   30.6   0.0    1.9  2  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
     0.0016   16.1   0.0     0.0042   14.8   0.0    1.7  2  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.1   0.0   6.9e-31     7e-28       1     176 []      89     270 ..      89     270 .. 0.91

  Alignments for each domain:
  == domain 1    score: 95.1 bits;  conditional E-value: 6.9e-31
   TIGR03162   1 lyLiRHgevevnkgkc..Y.GqtDvpLaekgeeqaaalrekledvkfdavvsSplsRcrelAella.eklklpi..ekddrLrEmdfGdwEgksydeisekypeldawakdlaharvpgGEsvadfsqRveefleelake..ekenvlivtHgGvirallahllglpleqllsieveygsitli 176
                 l+L+RHgev  + g +  Y G++DvpL+  ge++a+a++ +l++ ++d vvsSplsR+   Ae +  +++++++   k d ++E+d G+w g + +ei  +  ++ ++ +   +a++ gGEs++ +++Rv e  ++++++  ++++ +iv+H  v+r +l+++lg+p++++  + ++++s+t i
  MMETSP1061-20121228|4006_1  89 LFLVRHGEVINPGGDRpvYyGALDVPLSPLGEAEAEAAAMYLQQFDLDLVVSSPLSRAIYGAEQVLaSQKDTEAavVKMDGFKELDRGSWCGLTKEEIGVE--AMAKFDACDESATPEGGESYNFLKNRVLEDRDKVLERlpAGGTAAIVSHLQVTRSMLSEALGIPTAEMAGLGIATASVTCI 270
                 68*******98777544455******************************************97663444444334899**********************..************************************9999******************************99999999865 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   3.3e-18   3.4e-15       2     193 ..      89     279 ..      88     289 .. 0.82

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 3.3e-18
   TIGR03848   2 vllvrhgrstantak..tLaGrtpGveLderGreqaaalaerladlpiaaivssPlercretveaiaear...glevavderltevdYGdWtGrelkeLakeeLwkvvqahpsaavfPgGealaevqaravaavreldarleeehgpdavwvavshgDviksvladalGlhlDlfqrievdPasvsvvrytelrPfv 193
                 + lvrhg + +      +  G +  v L+  G + a+a+a  l++  ++ +vssPl+r+   +e++++++   ++ v+  + ++e d G+W G   +e+  e + k      sa+   gGe+ + ++ r+ +  ++  +rl     ++ +  +vsh  v +s+l++alG+   +   + +  asv+ + y + +   
  MMETSP1061-20121228|4006_1  89 LFLVRHGEVINPGGDrpVYYGAL-DVPLSPLGEAEAEAAAMYLQQFDLDLVVSSPLSRAIYGAEQVLASQkdtEAAVVKMDGFKELDRGSWCGLTKEEIGVEAMAKFDACDESAT-PEGGESYNFLKNRVLEDRDKVLERL----PAGGTAAIVSHLQVTRSMLSEALGIPTAEMAGLGIATASVTCIDYAADGTQT 279
                 57999998776655411345655.5************************************999887766444444556689*****************9999888766666665.4679*********877655555554....77788899*************************************9876655 PP

>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   4.4e-11   4.5e-08       2     100 ..      88     186 ..      87     194 .. 0.89
   2 ?    0.9   0.0     0.051        52     149     216 ..     207     273 ..     189     289 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 4.4e-11
   TIGR01258   2 klvlvrhGeseW..nkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaet 100
                 +l lvrhGe      ++  + G  dv ls  G++ea++a+  l++  ++ d++ +s l+rai  +++vl + + +  +v+k   + e   G+  Gl k+e+
  MMETSP1061-20121228|4006_1  88 RLFLVRHGEVINpgGDRPVYYGALDVPLSPLGEAEAEAAAMYLQQ--FDLDLVVSSPLSRAIYGAEQVLASQKDTEAAVVKMDGFKELDRGSWCGLTKEEI 186
                 799*****975411567789*******************999975..888*********************************************999985 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.051
   TIGR01258 149 eslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtgiPlvyeld 216
                 es +   +rvl   +d++ ++l +g +  iv+h    r+++    ++  +e+  l i t+     ++ 
  MMETSP1061-20121228|4006_1 207 ESYNFLKNRVLE-DRDKVLERLPAGGTAAIVSHLQVTRSMLSEALGIPTAEMAGLGIATASVTCIDYA 273
                 555555566665.46889999999****************9999999999999999999876665555 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.1e-06    0.0042       2      74 ..      88     164 ..      87     180 .. 0.78
   2 ?   -2.9   0.0       1.2   1.2e+03     103     117 ..     234     248 ..     222     284 .. 0.55

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.1e-06
   TIGR00249   2 elylmrHGeAkekaa......sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeivadaldesklev 74 
                 +l+l+rHGe  +            + +L+  G  eae  a +L++   +ld+++ Spl RA   ae+v    +++++ v
  MMETSP1061-20121228|4006_1  88 RLFLVRHGEVINPGGdrpvyyGALDVPLSPLGEAEAEAAAMYLQQ--FDLDLVVSSPLSRAIYGAEQVLASQKDTEAAV 164
                 689999999765442222333445778999*************97..589****************9988777666554 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.2
   TIGR00249 103 llvsHlPllgelvae 117
                 ++vsHl     +  e
  MMETSP1061-20121228|4006_1 234 AIVSHLQVTRSMLSE 248
                 577777654444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 1233.27
//
Query:       MMETSP1061-20121228|4007_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   12.4   0.1      0.068   11.5   0.1    1.4  1  TIGR01079 rplX_bact: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   1.7e-05     0.068       8      37 ..     296     328 ..     292     340 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.7e-05
   TIGR01079   8 DtVlvisGkdkGkkGkvlkvlpkkdk...viVe 37 
                 D V++  G dkGk+G ++ v+p ++k   v+V+
  MMETSP1061-20121228|4007_1 296 DLVVLCNGPDKGKTGILIGVYPPTEKtnnVVVK 328
                 99*******************977554448886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 1298.49
//
Query:       MMETSP1061-20121228|4009_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.85    5.0   7.5        0.8    5.0   5.2    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   5.2   0.00019       0.8     833     909 ..     140     211 ..       4     235 .. 0.60

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00019
   TIGR00927 833 eteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdeg 909
                 + ++eG   ++ +++e+e ++k++++eg+ ++  +++ +gde +te ++ ++a + ++    e+e +e    k d+ 
  MMETSP1061-20121228|4009_1 140 KNNPEG--SDKGGQTEKESQMKNKDGEGDGDG--DGDDDGDE-QTESKTTTTAPGTSAVTSEELECDEALWKKLDDH 211
                 222233..222223333333333332222222..22333332.2333333333333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 889.98
//
Query:       MMETSP1061-20121228|4008_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   18.0   0.0    0.00059   16.8   0.0    1.5  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein


Domain annotation for each model (and alignments):
>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.4e-07   0.00059     122     213 ..     191     284 ..     183     295 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.4e-07
   TIGR01977 122 eglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvleidveklai...dllaftGHKgLlgpqGiggllik 213
                 +g++d ++++k  +     ++++ aS     +++ e i ++a   g  +l+D+a   G+++ +v  +     d++  t HK+L gp G   ++ k
  MMETSP1061-20121228|4008_1 191 TGTIDYDQMEKSAELFRPKLIVAGASAYA-RLIDYERIRKIADSVGAYVLADMAHISGLVSANVIPSCFpfaDVVTTTTHKSLRGPRGAMIFYRK 284
                 68899999988888775555667777765.45689****************************9988653338999************9988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1682.86
//
Query:       MMETSP1061-20121228|4011_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 2563.79
//
Query:       MMETSP1061-20121228|4013_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1635.52
//
Query:       MMETSP1061-20121228|4010_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-54  181.4   0.6    3.4e-53  179.1   0.4    2.0  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.2e-22   77.1   0.2    7.8e-22   75.3   0.1    1.8  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    0.00017   19.6   0.1    0.00031   18.7   0.0    1.3  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  179.1   0.4   2.5e-56   3.4e-53       3     350 ..      32     356 ..      30     359 .. 0.86

  Alignments for each domain:
  == domain 1    score: 179.1 bits;  conditional E-value: 2.5e-56
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrrrskarrgedlevelelsleeavkGvekeielerkekCetCkGsGakkgsklktCktCgGtGqvrkqqgtllgff.qsqqtCseCkGeGkiikekCkeCkGkgrvkekkkievkiPaGvedgerlrvegkGeagenggesGdLyvevkvkehkiferegndllvevpisfvqailgeeievptleg.kvklk......ipagtqsge.......vlrlkgkGvkklksk.krGdllvkvkvevPkklskeekelleel 350
                 Ye+Lgv+kd +e+ +k+AYrk+  k+HPD+       e+ fke+n Aye+Lsd++kr+ YDq+g +g+e+++g gg           g+ +d+f++ffggg     rr  +r+g +++  l++sl++ ++G ++++ ++rk       G       + + C+ C+G+G+v++ ++   g++ q+q+ Cs+C+G+G i+k+           +e+k iev+i +G  +++++  +g  + +  g e+Gd+   ++ keh+ f+r+g+dll+   is+ qa  g +++ + l+g +v +k      i+++t++ +       ++ ++g+G++++ +   +G+l++ +++++Pk+l k+  ++l++l
  MMETSP1061-20121228|4010_1  32 YEVLGVEKDVDEKALKRAYRKMCLKHHPDKGG----DEHFFKEVNAAYEILSDPKKRELYDQYGLEGVEQEGGPGG----------PGGADDLFSMFFGGGA---GRRAGPRKGPSIQHPLKVSLNDLYNGKTVKLAINRKVIV----G-------DSSECSACNGQGVVMEMRQIGPGMItQMQRPCSTCSGKGYIAKT----------KNERKVIEVHIEKGAVNNQKISFRGMAD-EIPGRETGDVNFIIQEKEHDLFKRKGADLLIMQDISLNQALAGFSLRFNHLDGrDVIVKtkpgevIQSETKDPDsgrsmpyMMLVSGEGMPSRGNPfVKGNLYIAFHIDFPKTLGKDVVDKLRDL 356
                 *****************************988....6889*****************************9643321..........356789*******665...34789*****************************99863....3.......3467**********9888765555527889***********988..........58899*********************99.68899************************************************87777722333344445443223333335789*******99989******************9999998876 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   0.1   5.7e-25   7.8e-22       4      76 ..      31     100 ..      28     117 .. 0.90
   2 ?   -0.8   0.0     0.055        75     688     722 ..     199     233 ..     154     261 .. 0.67

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 5.7e-25
   TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDredd 76 
                  yevLg+++D de+ +k+a+rk+  k+hPD+  +   ++ f+e+n a+++Ls+Pkkr+ yD+yG +Gv++e++
  MMETSP1061-20121228|4010_1  31 LYEVLGVEKDVDEKALKRAYRKMCLKHHPDKGGD---EHFFKEVNAAYEILSDPKKRELYDQYGLEGVEQEGG 100
                 5*****************************9876...89********************************86 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.055
   TIGR03835 688 nvesttneaitLeikLsitsqleisaifkGfGhdf 722
                  + +t ne   +e+++ + + ++  + f+G+ ++ 
  MMETSP1061-20121228|4010_1 199 YIAKTKNERKVIEVHIEKGAVNNQKISFRGMADEI 233
                 33444555555555555555555555555554433 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   2.3e-07   0.00031       3      54 ..      41      85 ..      40      89 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2.3e-07
   TIGR00714  3 lDekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRa 54
                +DekaL++ yrk+  ++HPD  k   e     +   e+N Ay+ L dp kR 
  MMETSP1061-20121228|4010_1 41 VDEKALKRAYRKMCLKHHPD--KGGDE-----HFFKEVNAAYEILSDPKKRE 85
                7*******************..44444.....45679***********9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 2014.06
//
Query:       MMETSP1061-20121228|4014_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-15   54.6   0.4    1.3e-15   54.6   0.3    1.6  2  TIGR02350 prok_dnaK: chaperone protein DnaK
    1.6e-12   44.5   0.0    2.1e-12   44.2   0.0    1.1  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
     0.0013   16.9   3.4     0.0031   15.7   2.3    1.6  1  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
     0.0045   13.4   0.1     0.0061   13.0   0.0    1.2  1  TIGR01312 XylB: xylulokinase
  ------ inclusion threshold ------
       0.95    5.7   8.9        1.3    5.3   6.2    1.1  1  TIGR03657 IsdB: heme uptake protein IsdB


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.7      0.24     2e+02     508     567 ..      51     109 ..      34     138 .. 0.46
   2 !   54.6   0.3   1.6e-18   1.3e-15     314     376 ..     148     210 ..     139     220 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.24
   TIGR02350 508 keaeanaeedkkkkeevearneadsliyqaektlkeagdkleeeekekiekaveelkeal 567
                 ++ e++++ed+ +  +++a  +a+s +    +++  +   + +++k++ +   ++++e+ 
  MMETSP1061-20121228|4014_1  51 EDDEEYEDEDEDEYYDADADADAESTAAPPTQEVPPEVLDFRSSKKAQQKG-RKKAREVA 109
                 344445555555555555555555555444444433333333332222222.22222222 PP

  == domain 2    score: 54.6 bits;  conditional E-value: 1.6e-18
   TIGR02350 314 alkdaklsaseidevilvGGstriPavqelvkelvgkepnksvnPdevvaiGaaiqggvlkge 376
                  ++  ++s   i +++lvGG+tr+P++ +++ +l+g +p+k+v+Pde+va+G a+  gvl g 
  MMETSP1061-20121228|4014_1 148 KVRADGISGRPISRIVLVGGATRMPTIGRIIASLTGVTPQKTVDPDEAVALGCAVHVGVLDGR 210
                 56677889999*************************************************995 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   2.5e-15   2.1e-12     294     368 ..     139     213 ..      81     220 .. 0.82

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 2.5e-15
   TIGR01991 294 kktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepltdldPdevvAlGAalqadlLaknkrk 368
                 + t+++ ++ +r  g++   i+ +vlvGG+tr+p++ + +a+l + +p +++dPde vAlG a+++ +L + ++ 
  MMETSP1061-20121228|4014_1 139 SGTTTTSNAKVRADGISGRPISRIVLVGGATRMPTIGRIIASLTGVTPQKTVDPDEAVALGCAVHVGVLDGREEM 213
                 5567777788999999999*************************************************9987765 PP

>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   2.3   3.8e-06    0.0031      17      41 ..     121     145 ..     106     146 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.8e-06
   TIGR03892  17 laevgassgatstsssSsCsTcsct 41 
                 +a+ +a+sga s+sssSs++T++++
  MMETSP1061-20121228|4014_1 121 KAQATAASGAESSSSSSSSGTTTTS 145
                 5666667999999999999999886 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   7.4e-06    0.0061     388     437 ..     156     206 ..     143     235 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7.4e-06
   TIGR01312 388 glkikeirliGGGaksevwrqiladilglevvvpe.eeegaalGaAilAai 437
                 g +i++i+l+GG ++ ++  +i+a ++g++ +++   +e++alG A+   +
  MMETSP1061-20121228|4014_1 156 GRPISRIVLVGGATRMPTIGRIIASLTGVTPQKTVdPDEAVALGCAVHVGV 206
                 6789************************98776655**********97555 PP

>> TIGR03657  IsdB: heme uptake protein IsdB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.2    0.0015       1.3     466     546 ..      66     143 ..      49     158 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0015
   TIGR03657 466 qqdnsakkeatpatpskpttspv.ekesqkqdsqkddnkqlpsvekendassesgkdktpatkpakgevesssttptkvvst 546
                 + d  a  e+t a p++  ++ v +  s k+  qk  +k     +ke     es k ++ a+  a +   sss+  t    t
  MMETSP1061-20121228|4014_1  66 DADADADAESTAAPPTQEVPPEVlDFRSSKKAQQKGRKKAREVAKKERRFREESRKAQATAASGAESSSSSSSSGTT----T 143
                 46788999*********99998736689999999999999999999999999**99888877777665554443322....2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.15u 0.23s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 1457.16
//
Query:       MMETSP1061-20121228|4012_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-05   21.7   6.2      0.044   12.2   0.0    3.1  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
  ------ inclusion threshold ------
        0.1   10.0  15.0        1.4    6.2   5.1    4.4  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.2   2.4e+03      10      24 ..     214     228 ..     207     233 .. 0.59
   2 !    9.2   1.8   0.00018      0.37      38     114 ..     463     538 ..     423     541 .. 0.83
   3 !   12.2   0.0   2.1e-05     0.044      45      98 ..     559     612 ..     547     616 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.2
   TIGR02795  10 llvlkegdYakAeqa 24 
                 + + +eg++++A++ 
  MMETSP1061-20121228|4012_1 214 TTMHREGRFDQAITH 228
                 444556666666654 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00018
   TIGR02795  38 apnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaakl 114
                   +A  +l+  + +++k + A k++++  + y ++eka++    ++e++ + gq + A + l+   +++ ks  a++
  MMETSP1061-20121228|4012_1 463 YLEALHLLATEYQQQGKHNLALKTYQQEQS-YASQEKAAQISSHIAEIYIADGQLDMALEELESAYRQHDKSRDANN 538
                 557888899999999999999999998655.9999999999999999999999999998888887777777777665 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 2.1e-05
   TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkkt 98 
                  G ++y  +  +++ + +++++++ ++ + +++ l+  g++ +++g++ +A + 
  MMETSP1061-20121228|4012_1 559 KGDVYYHLGRREESLQVYQQAFQEAQNPAERAKLLYTTGKLCSRMGRTRDAISC 612
                 5999********************************************999765 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.013        27     129     165 ..     200     236 ..     192     250 .. 0.65
   2 ?    3.1   0.4    0.0064        13      64      90 ..     463     489 ..     455     492 .. 0.87
   3 ?    6.2   5.1   0.00068       1.4      19      69 ..     488     538 ..     484     621 .. 0.93
   4 ?   -1.8   0.0      0.19     4e+02      66      94 ..     633     662 ..     618     665 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.013
   TIGR02521 129 pkYeqparsyeNaglcalkagdtekaekyltralkid 165
                  ++ +++  ++ +++++ ++g++++a +  t+al++ 
  MMETSP1061-20121228|4012_1 200 SQFSSEQTRLKTLATTMHREGRFDQAITHWTKALDLA 236
                 4555566666666777777777777777777777654 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0064
   TIGR02521  64 dadanlalAlyyqqlgelekAeesfrk 90 
                 + +a + lA  yqq+g+++ A + +++
  MMETSP1061-20121228|4012_1 463 YLEALHLLATEYQQQGKHNLALKTYQQ 489
                 5578899******************97 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.00068
   TIGR02521  19 kesskkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanl 69 
                 +++++  ++ekaa+i    a  Y++ g+l+ A e+le A  +  k+ dan+
  MMETSP1061-20121228|4012_1 488 QQEQSYASQEKAAQISSHIAEIYIADGQLDMALEELESAYRQHDKSRDANN 538
                 5677888999******************************99999999885 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 0.19
   TIGR02521  66 danlalAlyyqq.lgelekAeesfrkAltl 94 
                   ++ lA +y + lg ++ A +++++Al++
  MMETSP1061-20121228|4012_1 633 VIYHQLAKLYDEgLGWHKMALKKYKNALKI 662
                 557778887754378899999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.28s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 2691.11
//
Query:       MMETSP1061-20121228|4015_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-77  254.4   0.2    7.7e-77  254.0   0.1    1.1  1  TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit
      3e-05   21.7   0.0    0.00014   19.5   0.0    1.9  1  TIGR03294 FrhG: coenzyme F420 hydrogenase, subunit gamma
  ------ inclusion threshold ------
      0.034   11.1   0.0       0.05   10.5   0.0    1.3  1  TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA)


Domain annotation for each model (and alignments):
>> TIGR01957  nuoB_fam: NADH-quinone oxidoreductase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.0   0.1   5.6e-80   7.7e-77       4     144 ..      67     206 ..      64     207 .. 0.98

  Alignments for each domain:
  == domain 1    score: 254.0 bits;  conditional E-value: 5.6e-80
   TIGR01957   4 ltkvdkllnwarssslwpltfglaccaiemmataasrydldrfgavvfrasPrqadvlivaGtvtkkmapvlrrlydqmpePkyvismGacansGGlfkesysvvkgvdrivPvdvyiPGcpPrpeallegllklqkkike 144
                 +++vd+l+nwar+ slwp+tfglacca+emm++aasryd++rfg +vfrasPrq+dv+ivaGt+t+kmap+lr++ydqmpeP++v+smG+can+GG++++sysvv+g+drivPvd+y+PGcpP++eall gll+lqkkik 
  MMETSP1061-20121228|4015_1  67 ISRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFG-MVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLFGLLQLQKKIKG 206
                 789*****************************************.9*********************************************************************************************95 PP

>> TIGR03294  FrhG: coenzyme F420 hydrogenase, subunit gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0     1e-07   0.00014      50     134 ..     119     194 ..     111     214 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1e-07
   TIGR03294  50 eldvalveGsvclqdehsleevkelrekakvvvalGacaatGnitrysrGgqlakpshesfvpltdvidvdlaipGcppspeaik 134
                 + dv +v G++  +   +l++v +   + + vv++G+ca  G+   ys                  ++ vd+++pGcpp+ ea+ 
  MMETSP1061-20121228|4015_1 119 QSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYS---------VVRGCDRIVPVDIYVPGCPPTAEALL 194
                 579999999999999999****999999************9999999854.........4445667889***********99875 PP

>> TIGR00391  hydA: hydrogenase (NiFe) small subunit (hydA)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.7e-05      0.05     100     201 ..      93     194 ..      64     201 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.7e-05
   TIGR00391 100 aeesledaiekykgkyilvveGsiPlgeegllcis.agepiveklrkaaega...aaiiaiGtcssfGgvqaarpnPtnavpldkvitdkpv.invPGcPPspknlv 201
                 a e ++ a  +y+ +   +v  + P + + +++ +  ++ ++  lrk  +       ++++G+c+  Gg        +     d++++   v i vPGcPP+ + l+
  MMETSP1061-20121228|4015_1  93 AVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGtLTNKMAPALRKVYDQMpepRWVVSMGSCANGGGYYH--YSYSVVRGCDRIVP---VdIYVPGCPPTAEALL 194
                 5577899999999888888888888888888877756778888888887654111579*******9999764..44567788999994...4399******998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1239.55
//
Query:       MMETSP1061-20121228|4017_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.11s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 2047.37
//
Query:       MMETSP1061-20121228|4018_1  [L=693]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (693 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 2286.71
//
Query:       MMETSP1061-20121228|4016_1  [L=950]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0097   11.5  56.3      0.054    9.0  23.2    2.2  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
        1.7    4.0  51.5        3.2    3.1  17.3    2.2  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8  17.6     3e-05     0.062     263     452 ..     198     386 ..     162     402 .. 0.47
   2 !    9.0  23.2   2.6e-05     0.054     681     885 ..     354     563 ..     351     569 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 3e-05
   TIGR02168 263 keleeeleelr.lekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleel.keelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeele 452
                 + ++e++     +  sel+++l+ lq++ ++ + +i+rle++++i+ + +  + ++l ++ e+     +   el++++++l+ ele +   + ++l++e+++    +++le r+ elee  e++++e++ l e+l++ +a+ +rle+e + l++ ++ + q+++++ +++ ++e++ ++  ++l e++  + 
  MMETSP1061-20121228|4016_1 198 SPSQERVRAASsAGLSELSKQLRILQAKNESQSVDIHRLERQLRIMADLQGISVSDLRRALEDACA-SEAFGELQNRVSKLKHELEWAtLSKQAELRKEMTA--PHIANLELRVGELEELEEKQAEEIRTLYENLRREKARATRLESEHQPLKKALQGMIQRVQSETARAAQMENDYRKQLQDLREQRSREL 386
                 333333333220234555555555555555555555555555555555544333333333322222.22234455555555555444322333333333333..4555555555555555555555555555555555555555555555555555555555555555555555555555555544444333 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 2.6e-05
   TIGR02168 681 ieeleeeieeleekiaelekelkelekele.eleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleae....ltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkeka 885
                 i+++++e++++++  ++ +k+l++l+++++ el  e+e     ++  +r+ s+ +++++  ++ +  +e++++ l+k+ +el+e ++ l+e+ +++ e+l +aee+  +++++++  +++l+ + ++l+e+ ++    l + k++++ +  r+e++ +++++l + ++ l+e++++++e+ +++ + ++++++e+++++++ +e + e +
  MMETSP1061-20121228|4016_1 354 IQRVQSETARAAQMENDYRKQLQDLREQRSrELLAEAERGAVSERGGKRSGSSVSSSASVSQELAADYERMVQLLKKQDAELRELKTRLREDETKNAEQLRAAEEHARKVQTDATVEQSKLALTVKELEEADDQnglkLAQYKARFSVQDDRIEDMGQQLDSLYTAFTLLSEEFDSEKERRAAMMDHLRDADAEIARHTTKQQEEEHETQ 563
                 788999999999999999999999999765155566666666666668999999999999999999**************************************9999999999999988888888888877653322558899999999********************************9999999999999888887777766654 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1  17.3    0.0016       3.2     740     933 ..     197     391 ..     161     430 .. 0.48
   2 ?    0.9  21.2    0.0071        14     181     381 ..     355     562 ..     354     569 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0016
   TIGR02169 740 leeleeklsele.eeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekl..eeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeee 933
                 l  ++e++++ +   l e  ++l  l+a+ e++  ++++l+ +l  + a+l+   +  +++ le+    e   ++++r++++ +el+  +l+k+ +e +++    +i++le +  e+e+  e++  +++ l e+l++ +a+   Le+e++ Lkk  + + + ++    +  ++e ++ k+ + l+e++ +   +e e
  MMETSP1061-20121228|4016_1 197 LSPSQERVRAASsAGLSELSKQLRILQAKNESQSVDIHRLERQLR-IMADLQGISVSDLRRALEDAcaSEAFGELQNRVSKLKHELEWATLSKQ-AELRKEMTAPHIANLELRVGELEELEEKQAEEIRTLYENLRREKARATRLESEHQPLKKALQGMIQRVQSETARAAQMENDYRKQLQDLREQRSRELLAEAE 391
                 344444444333033455555555566666666666666666653.445555555555555555431144455666666666666666654443.333344444555556666666666666666666666666666666666666666655555555555555555555555544444444333333333323322 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.0071
   TIGR02169 181 eeveeriervelvieevrqqlerLekerekae....rYkeLkkekreleltll...lkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkea 381
                 ++v+ + +r+  + +  r+ql+ L++ r + +    +  +++++  +  ++     ++  ++l ++ e++ + l+++ +el +l+ ++ e e + +e  +  ee ++k++  +  eq ++  +++el+    +   ++a+++ +    ++r++ + +++d+l    + l++e  +ek +r++++++l+++ +e +    + +e+++e 
  MMETSP1061-20121228|4016_1 355 QRVQSETARAAQMENDYRKQLQDLREQRSRELlaeaERGAVSERGGKRSGSSVsssASVSQELAADYERMVQLLKKQDAELRELKTRLREDETKNAEQLRAAEEHARKVQTDATVEQSKLALTVKELEEADDQNGLKLAQYKARFSVQDDRIEDMGQQLDSLYTAFTLLSEEFDSEKERRAAMMDHLRDADAEIARHTTKQQEEEHET 562
                 6777788888888888888888888887765411112234555444444333300033345566666666666666677777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (950 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 1990.31
//
Query:       MMETSP1061-20121228|4019_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 2439.35
//
Query:       MMETSP1061-20121228|4020_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 1785.15
//
Query:       MMETSP1061-20121228|4022_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1446.80
//
Query:       MMETSP1061-20121228|4024_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-10   39.2   0.0    4.3e-08   30.7   0.0    2.3  2  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J


Domain annotation for each model (and alignments):
>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0   0.00036       1.5      37      59 ..     171     193 ..     164     203 .. 0.88
   2 !   30.7   0.0     1e-11   4.3e-08      72     185 ..     248     359 ..     241     362 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00036
   TIGR00438  37 ldlGaaPGGWsqvavekvgekGl 59 
                  dl  aPGG+s ++++++  kG 
  MMETSP1061-20121228|4024_1 171 ADLCGAPGGFSEYIMKRIRAKGT 193
                 59****************99996 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 1e-11
   TIGR00438  72 envdfirGdftdeevlekilervgddkvdvvisdaaPnlsGirdidhlrsidlvelaldiakevlkekGnfvvkv..fqGeeldeylkelrklfekvkvrkPeasrkrsaevyiva 185
                 env + + d+  +     i     + k+++v++d   +     +     s +lv   l  + e+l+ +G +vvk   fq +++   ++ +++lf+ +++ kP +sr +s e y+v 
  MMETSP1061-20121228|4024_1 248 ENVAAFQRDIGTDLEAAGIT----QRKMNLVVADGGFDAQRNSECQEGLSQKLVIYELAASLEMLDIGGTLVVKLfgFQTDTIRMAMRSMHHLFDSLELIKPISSRPASSERYVVF 359
                 66666666666655555444....447779999999999999999999999***********************84469***********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1909.72
//
Query:       MMETSP1061-20121228|4025_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 2639.78
//
Query:       MMETSP1061-20121228|4021_1  [L=1372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       620  (0.151146); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.13u 0.17s 00:00:01.29 Elapsed: 00:00:00.96
# Mc/sec: 1886.34
//
Query:       MMETSP1061-20121228|4023_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.079   10.3   0.0       0.13    9.5   0.0    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   3.3e-05      0.13     155     178 ..     632     655 ..     615     676 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 3.3e-05
   TIGR00968 155 depfgaldakvrkelrawlrklhd 178
                   p +a da+ rk+lr w+r+l  
  MMETSP1061-20121228|4023_1 632 HTPESAADARTRKHLRVWVRRLQC 655
                 56889****************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 1872.75
//
Query:       MMETSP1061-20121228|4026_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35    7.2   6.5       0.42    6.9   4.5    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
       0.59    6.7   9.6       0.79    6.2   6.7    1.2  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
          7    3.6  13.1        9.1    3.2   9.1    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.5   0.00031      0.42     196     281 ..       7      93 ..       3     120 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00031
   TIGR01348 196 aslevPapasGvvkslkvkvGdkvktGdlilvlevegaapaaaeapakaeaaaaapaaeaeeaaaap.aaakaeakapvdantenda 281
                 a++e+ + a+G+ + +  + G + ++ +  l  ++e++a a ++ p++ ++ + ++  + ++a+a++ a+a a+a+a+ +++t++ +
  MMETSP1061-20121228|4026_1   7 ATIEMVTIAAGTDDPVDNDNGVSASQSESKLESQSESTAAAPEAPPEPGDSGSDSQHPSTSSASASAsASASASASASASTTTRHHT 93 
                 788888888888888888888888888888877777655555555555555555554433333332203333333333333333322 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   6.7   0.00058      0.79      56     126 ..      11      85 ..       2     103 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00058
   TIGR02927  56 lleikaeeddtvevGgvlaiiGeeg..eagsedaeapaepeeepaeeppkee.pkk.aaeapaeaaaqaqgsgea 126
                 ++ i a  dd v+    ++    e+  e+ se+++a++e  +ep +   +++ p++ +a+a a a+a+a++s++a
  MMETSP1061-20121228|4026_1  11 MVTIAAGTDDPVDNDNGVSASQSESklESQSESTAAAPEAPPEPGDSGSDSQhPSTsSASASASASASASASASA 85 
                 456777788888765544443333312557888877777777776655444314330234444444444433333 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   9.1    0.0066       9.1      65     146 ..      23     102 ..      11     114 .. 0.56

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0066
   TIGR00601  65 kekdfvvvmvskkKavkakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegds 146
                 ++++ v    s +K  + ++++ aa+pe+ p+p+  +   s  +++s+a asa +  s +  ++++t+++ + ++ +++ ++
  MMETSP1061-20121228|4026_1  23 DNDNGVSASQSESKLES-QSESTAAAPEAPPEPGD-SGSDSQHPSTSSASASASASASASASASASTTTRHHTSTLSTSCSI 102
                 55555555556666655.77777888888888887.4444444444444444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 828.35
//
Query:       MMETSP1061-20121228|4027_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-15   55.0   0.0    1.6e-14   52.0   0.0    1.9  1  TIGR00995 3a0901s06TIC22: chloroplast protein import component, Tic22 family


Domain annotation for each model (and alignments):
>> TIGR00995  3a0901s06TIC22: chloroplast protein import component, Tic22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   3.8e-18   1.6e-14      54     259 ..      32     263 ..      21     268 .. 0.76

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 3.8e-18
   TIGR00995  54 tfaigtwlkttlqaltLspeevakiLaGvsvftvsdadne.fvlisdadgeksiGllifrqedaeafLaelrkrkkelks....qakvvPitLdevvklk..veglafrflPdPvqikaalel.....kaank..........esfdGvPvfqselLvv......kkknkryiPvylskedieqelskfkreskavadsqvidvgsledvlkklelsekdsawedlifivPgke 259
                 t +i t l++t    +Ls +ev  +L  ++v+ v++ ++e  vl+ ++++ k i  + f  e a++    lrk+ +e  +     ++  P+ L    +++   eg+ +r lP+P  +  a++l     k +nk          + f+ vP+f+ ++L v      + + +  +P+yl  +d+   +++  ++s +      +  + l d + ++   e  + +   if++P+ +
  MMETSP1061-20121228|4027_1  32 TRSIPTVLHATKSYPALSRDEVQDMLDTIPVYAVTEPNQEgLVLLKEKNNPKDIAYFFFSPEAANTVFSPLRKKENESSGmgewSVSAYPLGLVWFELINepEEGIEYRLLPEPEDLMGAQNLlreqqKQSNKidlklqslfqKPFNEVPIFVDQFLRVtaldrsQDDTRECVPMYLGLKDLMDTVNQAIKSSSGE-YQAAMTAVDLRDLIDEMM-KESANDYRRAIFVPPTAK 263
                 556778889999999*********************988824567788999***********************9998753322355556666544556522577*********99999987633322234432222222222568899999999998844444355677899**********************9.4455666789****9984.45688899*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 1246.13
//
Query:       MMETSP1061-20121228|4028_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   10.7   0.0       0.03   10.2   0.0    1.1  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   7.2e-06      0.03     132     164 ..     371     403 ..     349     407 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 7.2e-06
   TIGR00870 132 italilAihkqnyeivklLlekgasvearakgd 164
                  t+l+ A+   + e+v+ L+ekga+++a  +g+
  MMETSP1061-20121228|4028_1 371 WTPLHEAARSGQTEVVNYLVEKGADINAVGEGN 403
                 59*************************988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2111.83
//
Query:       MMETSP1061-20121228|4029_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.1    4.5  17.6        0.1    8.8   8.5    1.6  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        8.7    2.5  16.3         19    1.4  11.3    1.5  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   8.5   5.1e-05       0.1     321     376 ..      63     121 ..      15     201 .. 0.52
   2 ?   -2.3   0.1      0.12   2.4e+02     315     343 ..     231     259 ..     220     282 .. 0.43

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 5.1e-05
   TIGR02442 321 keekkleekkeeakpdeekedeseekekeeskkqe....eeepgkddekeedekeeaeee 376
                 + e+++ee++e+ ++ e+ e+ + e++++ + ++e    eee++++++++ede+e+ae+e
  MMETSP1061-20121228|4029_1  63 DGENQAEEEDENVEDAEQGENAE-EADADAEAEEEeedeEEEEEEEENMDEDEEEQAEKE 121
                 22222222222222222222111.222222222210000111222222222222222222 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.12
   TIGR02442 315 feeeqekeekkleekkeeakpdeekedes 343
                  e + ++++++l ++   +k +ee+ de+
  MMETSP1061-20121228|4029_1 231 KEVSSQSSKRSLRQSLMGQKRKEETDDEQ 259
                 33332222222222222222222222222 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4  11.3    0.0093        19      57     131 ..      57     131 ..      42     136 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.0093
   TIGR03490  57 eksensnnksnseekdeeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqadepnndhadqknnnkvdfsdl 131
                 e  e +  ++ +ee+de+  + ++ e+ +++  + e +e++++e+++ +++++ de+++++a+++ ++ v + dl
  MMETSP1061-20121228|4029_1  57 EVDEDADGENQAEEEDENVEDAEQGENAEEADADAEAEEEEEDEEEEEEEEENMDEDEEEQAEKEGDDYVFYDDL 131
                 333333344455555566566666666666666666666666666667788889999888888877777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       300  (0.0731351); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 898.78
//
Query:       MMETSP1061-20121228|4030_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.42
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|4033_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 702.52
//
Query:       MMETSP1061-20121228|4031_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 2240.25
//
Query:       MMETSP1061-20121228|4035_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 2719.78
//
Query:       MMETSP1061-20121228|4039_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.40
# Mc/sec: 752.34
//
Query:       MMETSP1061-20121228|4037_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 755.94
//
Query:       MMETSP1061-20121228|4038_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-15   53.8   9.8    4.7e-15   53.2   6.8    1.1  1  TIGR00797 matE: MATE efflux family protein
    2.6e-05   21.0   1.2    2.6e-05   21.0   0.9    1.5  2  TIGR01695 mviN: integral membrane protein MviN


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   6.8   2.3e-18   4.7e-15       4     199 ..     147     376 ..     145     400 .. 0.86

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 2.3e-18
   TIGR00797   4 laniaqpllslvDtafvG.....hlgpveLaavglgslvlmvliiillglltattalvaqavGagnqq.....................rlsrsasqslllalllgllvavvlifaakpllslmg.........adeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilifkfglGivGaAlAtvisqylmflllllyilk.akkvd 199
                 l  +++pllslvDt +vG     +   v++aa+g ++++l  li  + +l+ att  +a   +a                          l++s+s  l la++ g +v++++++++k ++  m            +++  la++Y+ri+ + +p+  + +++q+++ +  d  tp i++ +++v+n + d +l    ++Gi+GaA+At+++++ ++ +ll +++k  +  +
  MMETSP1061-20121228|4038_1 147 LIWLSEPLLSLVDTTIVGlkasaQSAVVQIAALGPATTLLDSLIYTTYFLAIATTNQLAPDLAAAAACetslsagdkkianatnanpwrDLRTSTSHLLGLAIFFGSVVSFITFIFGKAIIGQMIggssnidaaEASAIVPLATNYARIRAIVAPFSIVGFVAQSFCLANLDIATPAIAVAAASVVNLVGDLAL--SGRYGIQGAAVATALATVTSCFVLLRKVRKtTNGWK 376
                 556789***********96544444568999999999999999*************9999888887777999**************************************99999999988655436766665556778899*************************************************998..555***********************9998633333 PP

>> TIGR01695  mviN: integral membrane protein MviN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.3       0.5     1e+03     313     332 ..     138     157 ..     137     158 .. 0.88
   2 !   21.0   0.9   1.3e-08   2.6e-05     288     432 ..     225     374 ..     218     386 .. 0.79

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 0.5
   TIGR01695 313 llliPvsflllvlsepivsl 332
                 l+++ ++++l+ lsep++sl
  MMETSP1061-20121228|4038_1 138 LIAFTATTILIWLSEPLLSL 157
                 789999999*****999988 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 1.3e-08
   TIGR01695 288 lsksasegdwnelekllkqgirlllllliPvsflllvlsepivsllfe.rgaFseedalktatiLaaya...lGlifyslqkvllraF.YAkedtktPfivsvisvvlnvllslllikllglsgialatslaaivsvvllllrlkkrlkg 432
                 ++++ + + w  l+ +++  + l ++    vsf+ +++++ i+  + + +++ ++ +a +  ++   ya     + ++s++ ++++ F  A  d+ tP+i+ +  +v+n + +l+l  ++g +g a+at+la + s ++ll++++k  +g
  MMETSP1061-20121228|4038_1 225 IANATNANPWRDLRTSTSHLLGLAIFFGSVVSFITFIFGKAIIGQMIGgSSNIDAAEASAIVPLATNYArirAIVAPFSIVGFVAQSFcLANLDIATPAIAVAAASVVNLVGDLALSGRYGIQGAAVATALATVTSCFVLLRKVRKTTNG 374
                 5666677778888888888888888888899999999999998666651455555555555555556753323467899999999888569***************************************************99997554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.10s 00:00:00.33 Elapsed: 00:00:00.56
# Mc/sec: 1037.39
//
Query:       MMETSP1061-20121228|4036_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.47
# Mc/sec: 783.51
//
Query:       MMETSP1061-20121228|4040_1  [L=1741]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   14.7   0.0      0.013   12.9   0.0    1.9  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
  ------ inclusion threshold ------
      0.016   12.2   0.0      0.031   11.3   0.0    1.4  1  TIGR01420 pilT_fam: twitching motility protein


Domain annotation for each model (and alignments):
>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.76   1.6e+03     192     209 ..     880     897 ..     879     899 .. 0.87
   2 !   12.9   0.0   6.1e-06     0.013      10      68 ..    1473    1530 ..    1468    1543 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.76
   TIGR03420 192 srdlrsLlelLdaLdkas 209
                 +rdlr+L+++Ld++ ++s
  MMETSP1061-20121228|4040_1 880 DRDLRALVAILDTIGTLS 897
                 69**********998776 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 6.1e-06
   TIGR03420   10 edatldnFlagenaellaalrelaeakaerllylwGesgsGksHLLqAacaaaeeagks 68  
                  +++t  +F+ g+   l   l++l  + ++rl+ + Ge+g G+s L+ A+c+ ++e+ ++
  MMETSP1061-20121228|4040_1 1473 PSPTPPQFFLGREVDLYYILSAL-LKLNKRLVSVLGETGIGRSSLVCALCHYINERAST 1530
                  55666678888888888888888.778999***********************998654 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.5e-05     0.031     108     151 ..    1486    1529 ..    1481    1536 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.5e-05
   TIGR01420  108 lglpevlkelaekkrGlilvtGptGsGKsttlAslidyinkeka 151 
                  ++l  +l+ l++ ++ l+ v G+tG G+s  + +l  yin++++
  MMETSP1061-20121228|4040_1 1486 VDLYYILSALLKLNKRLVSVLGETGIGRSSLVCALCHYINERAS 1529
                  6677899999******************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1741 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.16s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 3063.91
//
Query:       MMETSP1061-20121228|4041_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 551.95
//
Query:       MMETSP1061-20121228|4044_1  [L=1153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-169  561.7   2.6   2.1e-165  549.7   0.4    3.1  3  TIGR00691 spoT_relA: RelA/SpoT family protein


Domain annotation for each model (and alignments):
>> TIGR00691  spoT_relA: RelA/SpoT family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  549.7   0.4    5e-169  2.1e-165       1     538 [.     296     874 ..     296     912 .. 0.85
   2 !    5.1   0.0   0.00031       1.3     556     592 ..     954     994 ..     928    1002 .. 0.80
   3 !    5.2   0.0   0.00028       1.1     607     685 ..    1062    1138 ..    1037    1140 .. 0.77

  Alignments for each domain:
  == domain 1    score: 549.7 bits;  conditional E-value: 5e-169
   TIGR00691   1 AlelakklHeeQkRksGePyiiHPlavalllaelglDeetviAaLLHDvvEDTdvteeeieeeFgeevaeLvdgvtKit...klkkksrqeaqaetfrkiilamaqdirvlviKlaDrlhNmrtleaLpkekqkriaketleiyaplAeRlGissiKteLedlsFkvlypkeYeeikelvkekkksreeklekvkselekeLe......ksgieaelegRsKhlYsiyqKmtvkeqk.leeilDllaiRiivksekd..............CYkvlgiiHsl..fkpipgrfKDYIalPkenlYqslhTtvigekgklvEvqIrTedmdevaeyGiaaHWkYKegg.nakkeakaeklrwlrellekqqeskdksefienlksdllneeiyvftpkgevvelpsgatavDfAYavhtdvgdkltgakvngkevaldkelkngdvveiitsknskpkvkWlnfvktskarekirqllkkrkkeeklsegkellekalgesk..lkledltes...iqkrleel........klkkleelleeiekkk..isskevvkllaeenkk....seaeektlklals.kke 538
                 Al +a+ +H++Q RksGeP+iiHP+ vallla l++De+tv+A+LLHD+vEDTd t e +ee+Fg  v  +v+g tK++   kl   + +  qae++r++++am+ d r++++KlaDrlhNmrtl+ +++ekq +i++etl+i+aplA+R+Gi+++K eLed +F +lyp eY+++ +++++++ ++e++lek ++ l+ +L+      ++  +++++gR+K++Ys ++Km++k+++ l++i+D++a+R+i+  + +              CY+vlg++ +l  f+p p r+KDYI+ Pk+n+YqslhT++i ++g+++EvqIrT+ m++vaeyG+a+HW+Y + +  ++  +++ ++ wl +++e+q e  ++ +f+++++++ll + ++vf  +g++++l++g+ta+D A+++ht+vg ++ g+++ngk+v++++el+ngdvv i+t++  +p+++W+++ k+++ar+k+r+++++++ke+  + gk ll   l  +   +++++  e+   i ++++e+        +++++++ll +i+k++  ++ ++ v +l++  +k         ++++ +l  k++
  MMETSP1061-20121228|4044_1 296 ALRVAYRAHRGQARKSGEPFIIHPVEVALLLAGLKMDEATVMAGLLHDTVEDTDLTFELVEEMFGTTVRGIVEGETKVSklpKLAIPDYADEQAENLRQMFVAMTDDYRIIIVKLADRLHNMRTLQHMKPEKQIKISRETLDIFAPLAHRMGIWQFKSELEDTAFMYLYPLEYKRLSRKLDQRHAKYEDTLEKSQKILKDRLNsdptlrQQAADVKVSGRMKEIYSLWHKMETKGERnLDHIVDVVALRVIITPQANpeddenvsdravwlCYHVLGLVQHLdgFQPFPTRVKDYISFPKPNGYQSLHTALI-LNGQKIEVQIRTNMMHQVAEYGMASHWAYTDVKrRQDGSDDLYNTPWLSSIKEWQDEKLNARDFVDSVRNELLGKRVFVFLRNGQILNLARGSTAIDAAFQIHTEVGLNMHGVEINGKPVSISYELQNGDVVSILTGEG-RPSTDWIRYAKSRSARSKLRSYFREKQKESLSEAGKILLMDYLWMHGplIEKSSYLEEefsIPTTVQEVaallpgntHFDNIDDLLIKIGKQEdrAMLHSFVSKLFKVPQKllinA----EKNRESLIpKSV 874
                 899*********************************************************************98666550005566677779********************************************************************************************************9999876211111455569*******************8877*************96432222235566688888********65556****************************.8******************************765788889999*********************************************************************************************975.7************************999999999998777666544311122222222345666666668888**99************998622667788899999888854331....333333321222 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00031
   TIGR00691 556 klakcCspipgdeiigivtkk....kklvvHrksCknlkne 592
                 +l ++C p++gd+iig+v  +     + +vHr  C+ ++ +
  MMETSP1061-20121228|4044_1 954 HLCTECLPVYGDDIIGTVPVDatseATPTVHRVCCSIAQRA 994
                 56789************954433336778999999877665 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.00028
   TIGR00691  607 kekaqkfeveikiellekkgvlskllkalsenesniesisvkekdkreaileitlevkdkkqllkimekikkvedvlkv 685 
                   e ++ + +ei ++  ++k +l++  +++se    i+  s +++  ++a+l + ++++   +l ++m+ +++++ v+ v
  MMETSP1061-20121228|4044_1 1062 DEPEHVYPCEIVVHCQDRKLLLADCSETVSELSEIIKTGSLTTN--EHATLVFLIKIRCLDDLQRVMNSLRQIPSVMAV 1138
                  45667899*********************999888888888777..556666666666688899999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.12s 00:00:00.64 Elapsed: 00:00:00.50
# Mc/sec: 3043.67
//
Query:       MMETSP1061-20121228|4043_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.4e-147  487.4  18.2   5.8e-116  385.6   6.6    3.0  2  TIGR00959 ffh: signal recognition particle protein
    6.3e-79  263.6   5.2      1e-60  203.6   3.8    2.0  2  TIGR01425 SRP54_euk: signal recognition particle protein SRP54
    4.4e-61  204.4   1.3    3.7e-50  168.6   0.2    3.2  3  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
    8.8e-08   30.3  19.6    5.9e-05   21.0   0.1    4.4  4  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
  ------ inclusion threshold ------
      0.014   12.9   0.7       0.16    9.5   0.0    2.8  3  TIGR00041 DTMP_kinase: thymidylate kinase
        0.1    8.8   4.8       0.15    8.2   0.1    2.3  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.0   1.0   5.2e-33   3.6e-30       1     127 [.      61     205 ..      61     212 .. 0.81
   2 !  385.6   6.6  8.4e-119  5.8e-116     120     427 ..     222     531 ..     217     532 .. 0.96

  Alignments for each domain:
  == domain 1    score: 103.0 bits;  conditional E-value: 5.2e-33
   TIGR00959   1 fesLseklkkileklskkkkitekdikealkeirlaLleaDVnlkvvkefikkvkekalgqevlkslspkqqlikivkeeLvallgee....sae..............lkl.aekkpavillvGLqGsGKtttaaKlakklkkke 127
                 f++Ls+ ++++++   +k++ite++ik al+++r+aLl+aDVn++v+ ++i+ vk+++lg++vl+++s++qq+ik +++eLv+++g++    s++              l+l +   pav+ll+GLqG+GKtt+a+Kla +lk++e
  MMETSP1061-20121228|4043_1  61 FDQLSNAISTVVQDF-GKQRITEESIKPALRSVRRALLDADVNIEVADALIDGVKKRSLGETVLDGISADQQFIKAMYDELVDMMGGDssakSEDsamgpgvlappastLALgTPGDPAVVLLAGLQGAGKTTAAGKLALYLKERE 205
                 789********9998.899*******************************************************************98533211112222221111111111124579***********************87765 PP

  == domain 2    score: 385.6 bits;  conditional E-value: 8.4e-119
   TIGR00959 120 akklkkkekkkvllvalDlyRpaAveqLkvlgeqvgvpvfekekekspveiakealeeakeekvdvvivDtaGRlqideelmeelkeikevlnPdeillVvdaltGqdavnvakeFderlgltgvvltklDgDargGaaLsvksvtgkPikfigvgEkledleeFhperiaeRilgmGDvlsLvekaeevvdeeeakklaeklakeefdleDlleqlrqikklGslskllkmlPglgkvkksekdldedekklkrieaiissmtkeErknpkiln.....asRkkRiakGsGtsvsdvnklikefeqakklmk 427
                 a++ + k+++kvll+a+D+yRpaA+ qL++lg++v+v+vf+  +e++pv+ia++al++ak+e++d++ivDtaGR  id+ lm el++ike+++Pde+llVvda+tGq+a  ++ +Fd  +gl+g++ltk+DgD+rgGaa+sv+ v gkPikf+g+gE+  dle+F+p+r+a+RilgmGDvls+veka+e+++++ea++++ek++++efd++D+l+q +++ k+Gsl+ + km+Pg+g+  +s+++l ++ek+lk++ea+is mt+eErknp++l       +R +Riak s + +++v +++ ef++++++m+
  MMETSP1061-20121228|4043_1 222 AAR-LPKRNRKVLLAAADVYRPAAITQLEILGKSVDVEVFSMGTEADPVDIAQQALAKAKAEGFDTLIVDTAGRQIIDDDLMGELQRIKETVKPDETLLVVDAMTGQEAASLTAAFDSAVGLSGAILTKMDGDSRGGAAVSVRGVSGKPIKFVGTGERTPDLEPFYPDRMAGRILGMGDVLSIVEKAQEEMSDKEAQRMEEKVKNAEFDFDDFLKQAKMVSKMGSLGGVAKMMPGMGG--VSTEQLIAAEKRLKKNEAMISVMTEEERKNPDLLIkdtkaRERLERIAKFSEMPIKEVRQFMSEFQKMRTMMS 531
                 444.55789***********************************************************************************************************************************************************************************************************************************95..6777788899**********************9853554456778**************************97 PP

>> TIGR01425  SRP54_euk: signal recognition particle protein SRP54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.7   0.0   2.9e-19     2e-16       4     129 ..      63     206 ..      60     214 .. 0.90
   2 !  203.6   3.8   1.5e-63     1e-60     125     428 .]     226     529 ..     218     529 .. 0.94

  Alignments for each domain:
  == domain 1    score: 57.7 bits;  conditional E-value: 2.9e-19
   TIGR01425   4 dlGsklssalrslssatvideevlnellkeistallesdvnvklvrklrenikkkinleelasglnkrkliqkavfeelvnlvdpkvea...................fkpkkgkssvimfvGlqGaGktttitklalyykkkGf 129
                 +l + +s+ ++++ +   i ee ++  l+ + +all++dvn+ +   l + +kk++  e++ +g+   +   ka+++elv+++  +  a                      + g ++v+++ GlqGaGktt+  klaly k++  
  MMETSP1061-20121228|4043_1  63 QLSNAISTVVQDFGK-QRITEESIKPALRSVRRALLDADVNIEVADALIDGVKKRSLGETVLDGISADQQFIKAMYDELVDMMGGDSSAksedsamgpgvlappastlALGTPGDPAVVLLAGLQGAGKTTAAGKLALYLKEREV 206
                 677777777777777.4567899************************************************************88888888**************9876668899**************************9865 PP

  == domain 2    score: 203.6 bits;  conditional E-value: 1.5e-63
   TIGR01425 125 kkkGfkvalvcadtfraGafdqlkqnatkakipfyGsylesdpvkiaseGvekfkkekfdiiivdtsGrhkqeeelfeemlqvaeaikpdsiifvmdgsiGqaaesqakafkdsvevgsviitkldGhakGGGalsavaatkspiifiGtGekvddleifdaksfvskllGlGdlkGlidkvkdlklddeekelieklkeGkftlrdlkeqlqnllkmGplgnilsmipGlssellskgneeessaklkkllvildsmtdkeldstdkvl..lkeesrivrvarGsGraireveelleqykklakm 428
                  k+  kv l +ad +r  a  ql+   +  ++  + + +e+dpv ia + + k k e fd +ivdt+Gr   +++l+ e+++++e++kpd++++v+d+  Gq a s + af  +v ++  i+tk+dG ++GG a+s    +  pi f+GtGe+  dle+f ++ +  ++lG+Gd+  +++k+++ + d+e +++ ek+k+ +f + d+ +q + + kmG lg +++m+pG++    ++     ++++lkk   ++  mt++e +  d ++  +k   r+ r+a+ s + i+ev++++ +++k+ +m
  MMETSP1061-20121228|4043_1 226 PKRNRKVLLAAADVYRPAAITQLEILGKSVDVEVFSMGTEADPVDIAQQALAKAKAEGFDTLIVDTAGRQIIDDDLMGELQRIKETVKPDETLLVVDAMTGQEAASLTAAFDSAVGLSGAILTKMDGDSRGGAAVSVRGVSGKPIKFVGTGERTPDLEPFYPDRMAGRILGMGDVLSIVEKAQEEMSDKEAQRMEEKVKNAEFDFDDFLKQAKMVSKMGSLGGVAKMMPGMGGVSTEQ--LIAAEKRLKKNEAMISVMTEEERKNPDLLIkdTKARERLERIAKFSEMPIKEVRQFMSEFQKMRTM 529
                 57888999*******************************************************************************************************************************************************************************************************************************9544444..444569****************99998766223456789************************987 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.3e-11   8.6e-09       7     108 ..      89     206 ..      83     214 .. 0.78
   2 !  168.6   0.2   5.4e-53   3.7e-50     100     277 ..     222     393 ..     219     395 .. 0.97
   3 ?   -1.6   0.1      0.39   2.7e+02      37      60 ..     499     522 ..     464     556 .. 0.58

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.3e-11
   TIGR00064   7 leeLeevLleaDvglevvekiieelkkelkekkvkeeeklkellkeelkealkeileketklel................kelkeekkpnvillvGvNGvGKTttiaKlakllkkegk 108
                 l++++++Ll+aDv++ev++ +i+ +kk+  +++v +  ++++   +++ ++l +++  +++ +                  +l +   p+v+ll G+ G+GKTt+ +Kla +lk+++ 
  MMETSP1061-20121228|4043_1  89 LRSVRRALLDADVNIEVADALIDGVKKRSLGETVLDGISADQQFIKAMYDELVDMMGGDSSAKSedsamgpgvlappastLALGTPGDPAVVLLAGLQGAGKTTAAGKLALYLKEREV 206
                 677899**********************999999887777766666666666555433333222233468998888876556678899************************998765 PP

  == domain 2    score: 168.6 bits;  conditional E-value: 5.4e-53
   TIGR00064 100 akllkkegkkvllaAgDTFrAaAieQleewakrlgvkvikqkegadpaavifdaikkakaknidvvliDTaGRlqnkknLmdelkkikrvikkvkkeapdevllvldattGqnaleqakvFneaveldgiilTKlDgtakgGivlaikeelklpvkligvGekidDLaeFdaeefvea 277
                 a+ l k+++kvllaA+D +r aAi Qle+ +k ++v+v +  ++adp  ++ +a+ kaka++ d +++DTaGR   + +Lm el++ik  +k      pde+llv+da+tGq+a +   +F+ av+l+g ilTK+Dg+++gG++++++   ++p+k++g+Ge++ DL++F ++++  +
  MMETSP1061-20121228|4043_1 222 AARLPKRNRKVLLAAADVYRPAAITQLEILGKSVDVEVFSMGTEADPVDIAQQALAKAKAEGFDTLIVDTAGRQIIDDDLMGELQRIKETVK------PDETLLVVDAMTGQEAASLTAAFDSAVGLSGAILTKMDGDSRGGAAVSVRGVSGKPIKFVGTGERTPDLEPFYPDRMAGR 393
                 778899**************************************************************************************......************************************************************************99988765 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.39
   TIGR00064  37 ekkvkeeeklkellkeelkealke 60 
                 ++++++  k +e+  +e+++ ++e
  MMETSP1061-20121228|4043_1 499 RERLERIAKFSEMPIKEVRQFMSE 522
                 333333333333333333333333 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0027       1.8     100     167 ..      44     116 ..      11     144 .. 0.64
   2 !   12.8   0.1   2.8e-05     0.019     199     226 ..     178     205 ..     172     212 .. 0.84
   3 !   21.0   0.1   8.6e-08   5.9e-05     220     286 .]     223     293 ..     220     293 .. 0.77
   4 ?   -3.5   5.1       2.5   1.7e+03     105     131 ..     485     537 ..     402     568 .. 0.60

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0027
   TIGR03499 100 qeaekkleeaeeelrkelkalkellekqlselal.....eeedperakllkklleagvseelarelleklkek 167
                 +++ ++  +a+ +l   +++l +++++ ++ + +     e  +p  +++ + ll+a+v+ e+a++l++ +k++
  MMETSP1061-20121228|4043_1  44 TAVDRRHVQASPQLNMMFDQLSNAISTVVQDFGKqriteESIKPALRSVRRALLDADVNIEVADALIDGVKKR 116
                 222222222223444444444444444444444345556999***************************9993 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.8e-05
   TIGR03499 199 gviaLvGptGvGKTTTlAKLAarfvleh 226
                  v++L G  G GKTT   KLA +++ ++
  MMETSP1061-20121228|4043_1 178 AVVLLAGLQGAGKTTAAGKLALYLKERE 205
                 5899*****************9887764 PP

  == domain 3    score: 21.0 bits;  conditional E-value: 8.6e-08
   TIGR03499 220 arfvlehgkkkValiTtDtyRiGAveQLktYakilgvpvkvvkdpke....lee..aleelkdkdliLiDTaG 286
                 ar+   ++++kV l  +D yR +A  QL++ +k  +v+v  + ++++     ++  a ++ + +d  ++DTaG
  MMETSP1061-20121228|4043_1 223 ARLP--KRNRKVLLAAADVYRPAAITQLEILGKSVDVEVFSMGTEADpvdiAQQalAKAKAEGFDTLIVDTAG 293
                 5544..3689*****************************9998776632222331144566789********9 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 2.5
   TIGR03499 105 kleeae..........................eelrkelkalkellekqlsel 131
                 + ++++                          +++++e+++++ +++++ ++ 
  MMETSP1061-20121228|4043_1 485 ERKNPDllikdtkarerleriakfsempikevRQFMSEFQKMRTMMSRMSKAN 537
                 11111112222222222333334445566666788888888888887776654 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00024      0.16       7      35 ..     180     208 ..     177     233 .. 0.80
   2 ?   -1.7   0.0      0.62   4.2e+02     111     135 ..     296     320 ..     291     332 .. 0.78
   3 ?   -0.8   0.3      0.34   2.3e+02     128     175 ..     488     535 ..     469     544 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00024
   TIGR00041   7 iviEGidGaGKTtqlellkkllkeeglkv 35 
                 +++ G+ GaGKTt++ +l+  lke+ +++
  MMETSP1061-20121228|4043_1 180 VLLAGLQGAGKTTAAGKLALYLKEREVDY 208
                 6788***************9999955443 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.62
   TIGR00041 111 kididlvlelnekalqlkPdlvilL 135
                  id dl+ el++    +kPd ++l+
  MMETSP1061-20121228|4043_1 296 IIDDDLMGELQRIKETVKPDETLLV 320
                 5788999999988888999999875 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.34
   TIGR00041 128 kPdlvilLdidpevalerlskrgeld.reelekldflekvrekylelad 175
                 +Pdl i  d++  + ler++k++e   +e  + +  ++k+r+   ++ +
  MMETSP1061-20121228|4043_1 488 NPDLLI-KDTKARERLERIAKFSEMPiKEVRQFMSEFQKMRTMMSRMSK 535
                 677644.589999999999999994434444445557777776665555 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.1   0.00023      0.15      29      53 ..     178     200 ..     167     208 .. 0.83
   2 ?    1.2   1.0     0.031        21     304     496 ..     460     524 ..     398     565 .. 0.55

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00023
   TIGR03185  29 piiLlgglNGaGKTTlLdaiqLaLY 53 
                  ++Ll gl GaGKTT   a +LaLY
  MMETSP1061-20121228|4043_1 178 AVVLLAGLQGAGKTTA--AGKLALY 200
                 69*************5..7788888 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.031
   TIGR03185 304 svkaqlrkeeqakqnqliqevleerdkellelLpklalpaelvkelaaelaelakkaktdleiplllsdselaqlevliekvkrekqdaksqLlkeleeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkelkektkqkedaeelervikladkvkktleeFr 496
                 s+++ ++ e++ k+n+ +++v++e +++   lL+k     e ++++a+  +  +k                                                                                                                                +v++ + eF+
  MMETSP1061-20121228|4043_1 460 STEQLIAAEKRLKKNEAMISVMTEEERKNPDLLIKDTKARERLERIAKFSEMPIK--------------------------------------------------------------------------------------------------------------------------------EVRQFMSEFQ 524
                 3344445555555555555555555555555555544445555555554444444................................................................................................................................3333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       316  (0.0770356); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.18s 00:00:00.56 Elapsed: 00:00:00.53
# Mc/sec: 1439.43
//
Query:       MMETSP1061-20121228|4042_1  [L=868]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-19   67.5  24.8    1.5e-16   58.7   5.0    3.5  3  TIGR00880 2_A_01_02: multidrug resistance protein
    6.1e-16   56.2  18.3    9.1e-16   55.6  12.7    1.3  1  TIGR00893 2A0114: D-galactonate transporter
    7.6e-16   55.8  14.8    1.3e-14   51.7  10.3    2.2  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
      1e-14   52.2  11.1    1.7e-14   51.5   7.1    1.7  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    1.4e-12   45.2   9.7    5.2e-12   43.3   6.8    1.8  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    1.8e-10   38.6  15.0    4.8e-10   37.2  10.4    1.7  1  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    1.4e-07   28.8   1.3    1.4e-07   28.8   0.9    1.7  2  TIGR00899 2A0120: sugar efflux transporter
    2.9e-07   27.4   9.2    7.9e-07   26.0   2.8    2.3  2  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
    1.7e-05   20.7   3.6    1.7e-05   20.7   2.5    1.6  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
    5.7e-05   19.9   6.0    5.7e-05   19.9   4.2    1.7  2  TIGR00898 2A0119: cation transport protein
      0.004   13.0   0.3     0.0082   12.0   0.2    1.4  1  TIGR00805 oat: sodium-independent organic anion transporter


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   5.0   3.9e-19   1.5e-16       7     140 ..     254     387 ..     248     388 .. 0.96
   2 ?    2.9   1.1     0.065        24      61     114 ..     432     487 ..     427     513 .. 0.76
   3 !    9.4   6.6   0.00062      0.23      29     137 ..     496     612 ..     463     616 .. 0.64

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 3.9e-19
   TIGR00880   7 yAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllpe 140
                  ++  l +s ++g+++d ++rk++ l   ++ +l+++ +  ss++++l++ar+ +G   + +++++ +l+ d++++eer++a + l +++ lg+ilG +  + +++  +w+++f++ a++ l+ + +++++++e
  MMETSP1061-20121228|4042_1 254 LGVFSLPLSGMIGFMADFYSRKHLFLACCILGALASAWSGWSSSYWSLFVARLCSGGCMSGSVPVAFSLLGDLFSKEERNAASSGLTSMMGLGIILGQIYAGEVGPSKSWQYPFYASAVVQLIMATMIALWVEE 387
                 567777788899***********************************************************************************************************************997 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.065
   TIGR00880  61 qGfgaaaalvagaaliadiikee.ersva.lgllsagialgpilGpllGavlaqal 114
                  Gf+++  + ++   + d  ++e  ++v    +l++ + +g+ +G + G++l+q +
  MMETSP1061-20121228|4042_1 432 YGFFTSLPWGIVFVFLNDYLSQEkGFTVEeATFLVMLFGVGCAIGGVTGGYLGQLF 487
                 58999999999999999988888545554144566677889999999999998765 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.00062
   TIGR00880  29 pvllvglfifvlsqllfals.....snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpl....lGavlaqalgwralfli.lallallafilllfl 137
                 p++++ + ++ ++ +l+ l      +n  +  +  +l+G++a+  +v+++  i+ + ++e r++al  ++++++lg  +Gpl    lG+v a+  +++  f i l+++ ++a+i llfl
  MMETSP1061-20121228|4042_1 496 PLYMGATTFVGIFPFLILLNshfqnHNGYLSKFYSVLGGCIASLPSVNVRPCIINVNPPESRGAALTAANLFVTLGRGIGPLcitlLGSVFAA--SRQSSFSItLSVFWTIAAIQLLFL 612
                 455555555555555555553333233334457889****************************************99999722225555553..344445441445555555555554 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6  12.7   2.4e-18   9.1e-16       2     398 ..     213     612 ..     212     613 .. 0.75

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 2.4e-18
   TIGR00893   2 vtvinyldratlSiAavtlkedLglsaaqyglvfsaf.sigyvlfqlp....ggllldriGakktlavaivlWg.lftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkg.kslvlarktaiiaglvlsllliatn.lvaskiaala.lv.alaffgkgl.aailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGs..fagallvvaalaligalsvlll 398
                 ++++ +l  ++++    ++ + +g+++ q  l   ++ ++++ +f lp    +g++ d + ++k l++a  + g l ++  +   +++sl+v+R   G   ++++P    ++   F ++er +a+s  +s+ +lg i+g+  +g +  + sWq  F  ++v+ +i++ +i  +++++ +  + ++ + + +++ g++ e      + + +  +  + k+   ++l    f +++++++  ++   yl qe+g++++ea +l +l ++  ++g+v+gg+l +l++k      +l   +++++++ +   li+ n  +++   +l+ ++ +l++  + l +  + + i +v ++e+ g++  + nl+  l+  +gP+ i  + ++      +   + ++++ +i+a+ +l+l
  MMETSP1061-20121228|4042_1 213 AFMVIWLPNNAMAPNLTQMADFFGMNESQRDLYLGSYcALALGVFSLPlsgmIGFMAD-FYSRKHLFLACCILGaLASAWSGWSSSYWSLFVARLCSGGCMSGSVPVAFSLLGDLFSKEERNAASSGLTSMMGLGIILGQIYAGEVGPSKSWQYPFYASAVVQLIMATMIALWVEEPIR--GGKEHALQGVLKAGIKYE-----RRLTLNGFVDTMSKNASNWILLWYGFFTSLPWGIVFVFLNDYLSQEKGFTVEEATFLVMLFGVGCAIGGVTGGYLGQLFMKGDrS--SLPLYMGATTFVGIFPFLILLNsHFQNHNGYLSkFYsVLGGCIASLpSVNVRPCIINVNPPESRGAALTAANLFVTLGRGIGPLCITLLGSVFAAsrQSSFSITLSVFWTIAAIQLLFL 612
                 5666666655566566667777888877776555444156777777752221344444.45677777776666615677888888********************************************************************************************99..888889999999997777.....33455566777779999***************************************************************97643..33444444444444444444442233333333213303444444455677788888999999999999999999999999999998777655442003344455667777777777765 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7  10.3   3.5e-17   1.3e-14      71     394 ..     264     579 ..     251     583 .. 0.76

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 3.5e-17
   TIGR00895  71 lfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEsikflvekkpekvrkilnaiapslqaeaqselaeekseekkkrsvvkllfkgklakatllLwllyflllvvvYlltsWlP.kLlveagaslskaalllvllnvGgvlgslllgaladrlgpk......vlalllllaavfavlvvs..tlssptllll..llvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpila 394
                 ++g +aD + Rk++ l + +l ++ ++ s+ + ++++L v+R+ +g  + g +p ++ L+ +  +k  r  + + +++   +G+++g + a+ + p   W+  f+  +++ l+++ +++ ++ E+i+   e+    +++ +           +  ++ e++   +  ++v+ +   k a + +lLw ++f +l    ++   l  +L++e+g+ +++a++l++l+ vG ++g +  g+l + + ++       ++  + + ++f +l+    ++++ ++ l+    v+ G ++  + + +  +  ++ p++ R+ ++  a     lg  igp+ +
  MMETSP1061-20121228|4042_1 264 MIGFMADFYSRKHLFLACCILGALASAWSGWSSSYWSLFVARLCSGGCMSGSVPVAFSLLGDLFSKEERNAASSGLTSMMGLGIILGQIYAGEVGPSKSWQYPFYASAVVQLIMATMIALWVEEPIRGGKEH----ALQGVL----------KAGIKYERR--LTLNGFVDTM--SKNASNWILLWYGFFTSLPW-GIVFVFLNdYLSQEKGFTVEEATFLVMLFGVGCAIGGVTGGYLGQLFMKGdrsslpLYMGATTFVGIFPFLILLnsHFQNHNGYLSkfYSVLGGCIASLPSVNVRPCIINVNPPESRGAALTAANLFVTLGRGIGPLCI 579
                 4799**************************************************************************************************************************977666....222221..........113333333..4567788854..456778899***99976532.2333344449*******************************99888866621011123333344455544443332555555555321334445556666666677778888888888877777666666777777665 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   7.1   4.6e-17   1.7e-14      49     304 ..     264     512 ..     245     586 .. 0.85

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 4.6e-17
   TIGR00881  49 vvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeedkekkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDklfkgrraplavifmaliivsllvywl 304
                 ++g+++D +s + ++++  il a+++   g+sss w+l+++++ +G   +   p++ +ll  +fs++er  + + +++ + +g +l   + +  +  + sw+  f+ ++++ +i++ ++ l +++ p   g +++ +   ++       k e + + ++++ ++ kn   w++    +f+ +   ++   ++ Yl+qekg++ e+a + v+lf ++  +G +  G+l   ++kg r +l + + a  +v++  +  
  MMETSP1061-20121228|4042_1 264 MIGFMADFYSRKHLFLACCILGALASAWSGWSSSYWSLFVARLCSGGCMSGSVPVAFSLLGDLFSKEERNAASSGLTSMMGLGIILGQ-IYAGEVGPSKSWQYPFYASAVVQLIMATMIALWVEE-PIRGGKEHALQGVLKA-----GIKYERRLTLNGFVDTMSKNASNWILLWYGFFTSLPWGIVFVFLNDYLSQEKGFTVEEATFLVMLFGVGCAIGGVTGGYLGQLFMKGDRSSLPLYMGATTFVGIFPFLI 512
                 57999*****************************************************************************999988.99999********************99766555554.4444544444443333.....356678999***************9999999988888888899******************************************************999998765544 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   6.8   1.4e-14   5.2e-12      66     314 ..     264     500 ..     225     517 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.4e-14
   TIGR00891  66 llGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvvvnvlgdsWriLfflsilpiil.alflrkrvpeaevwkeklkakklvktrvdkvlggealvkaivktkavamkrsvqkrwllfvyLvvllvaanylshaiqdl.lPtyLkadlglskdtvavivvvsniGaivGglvfGtlsevlgrrkalvialllg 314
                 ++G +aD ++r+  ++ + +l ++a+  ++++ +y  l+++rl  G  m+G   +a +l  +   k+ r+ +s  l s   +G++l  + +  v++ +   W++ f+ s +  ++ a ++ + v+e     + ++ + ++k+ ++     e ++   +   + +m + +         +++   ++  l ++i  + l  yL  + g+  + ++ +v++ ++G ++Gg+ +G l++ + +     + l +g
  MMETSP1061-20121228|4042_1 264 MIGFMADFYSRKHLFLACCILGALASAWSGWSSSYWSLFVARLCSGGCMSGSVPVAFSLLGDLFSKEERNAASSGLTSMMGLGIILGQIYAGEVGPSKS--WQYPFYASAVVQLImATMIALWVEEPIRGGKEHALQGVLKAGIKY----ERRLT--LNGFVDTMSKNASNW------ILLWYGFFTSLPWGIVFVfLNDYLSQEKGFTVEEATFLVMLFGVGCAIGGVTGGYLGQLFMKGDRSSLPLYMG 500
                 78*********************************************************************************************9877..******997766550555666566665666666666666665543....33333..233334455554443......4445566778899987652789************************************986544444444444 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2  10.4   1.3e-12   4.8e-10       9     288 ..     209     508 ..     201     613 .. 0.67

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.3e-12
   TIGR00710   9 lLglLaiLaplgidmYlpalpeiakdlsvsasavqltltlyl.lglavgqL....llGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyvlvflsWhaiFavlsligillvaliflllpeTkakekri................qistsvetfllllkdkellgyalivgassgglfaflsaapfvlidimgvspevfgllfalniialifgsfligrlvkki..gaksllrialvllivsavl 288
                 l gl ++   l  +   p l ++a  ++++ s+  l l +y  l l+v  L    ++G ++D y Rk   L + +++al+s  + +s++   l v+R+  +   s ++ + ++l+ D+++kee +   s l++++ l  +l+ +  g v +  sW++ F+  +++ ++++ +i+l + e     k                  +++  v t+     +  ll y + ++   g++f+fl      l++++g+++e    l +l ++   +g++  g+l +    g +s l++ + +    +++
  MMETSP1061-20121228|4042_1 209 LVGLAFMVIWLPNNAMAPNLTQMADFFGMNESQRDLYLGSYCaLALGVFSLplsgMIGFMADFYSRKHLFLACCILGALASAWSGWSSSYWSLFVARLCSGGCMSGSVPVAFSLLGDLFSKEERNAASSGLTSMMGLGIILGQIYAGEVGPSKSWQYPFYASAVVQLIMATMIALWVEEPIRGGKEHalqgvlkagikyerrlTLNGFVDTMSKNASNWILLWYGFFTSLPWGIVFVFLND---YLSQEKGFTVEEATFLVMLFGVGCAIGGVTGGYLGQLFmkGDRSSLPLYMGATTFVGIF 508
                 4555556666666677899999999999999999999988751455555554444579***********************************************9999****************************************************99999999999998877643222111112333222222111133333333333333344555666666666778887765...35667788888888888888888888888877777654113444555555444444444 PP

>> TIGR00899  2A0120: sugar efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.9   3.7e-10   1.4e-07      46     176 ..     258     385 ..     208     428 .. 0.84
   2 ?   -3.3   0.0       2.2   8.1e+02     143     172 ..     577     608 ..     560     626 .. 0.38

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 3.7e-10
   TIGR00899  46 giavsqllakasDkqgdrkkLilaclllavlaavlfalnrnYlvllvlgvlLsslastavPqlfaLarehadetgreavmfssvlRaqisLawvigpplafaLalgfafavmflaaavalvvaavlvtllL 176
                 ++  s +++  +D    rk+L lac++l++la+    ++ +Y  l v         s  vP  f+L  +   ++ r+a   ss l   + L+ ++g   a+++    +++  f+a av+ ++ a +++l +
  MMETSP1061-20121228|4042_1 258 SLPLSGMIGFMADFY-SRKHLFLACCILGALASAWSGWSSSYWSLFVARLCSGGCMSGSVPVAFSLLGDLFSKEERNA--ASSGLTSMMGLGIILGQIYAGEVGPSKSWQYPFYASAVVQLIMATMIALWV 385
                 555566666666654.699*************************99999999999**********************5..5999**********************************9999999998754 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.2
   TIGR00899 143 plafaLalgfaf..avmflaaavalvvaavlv 172
                 + +  L   fa   +  f++   ++ + a++ 
  MMETSP1061-20121228|4042_1 577 LCITLLGSVFAAsrQSSFSITLSVFWTIAAIQ 608
                 33333333332100112222222222222222 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   2.8   2.1e-09   7.9e-07      53     179 ..     258     387 ..     206     398 .. 0.82
   2 !    4.0   0.1    0.0095       3.5      98     144 ..     531     577 ..     446     615 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 2.1e-09
   TIGR00711  53 vIplt...gwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFlinvpiGiivvvvallilke 179
                 ++pl+   g++a+  ++++lfl   ++ +l+s  +g +++  +l ++R+  g   +  +p+++sll   +  e+r  a   +   + ++ +lG i +G +    +W++ F+   ++ +i  ++ +l ++e
  MMETSP1061-20121228|4042_1 258 SLPLSgmiGFMADFYSRKHLFLACCILGALASAWSGWSSSYWSLFVARLCSGGCMSGSVPVAFSLLGDLFSKEERNAASSGLTSMMGLGIILGQIYAGEVGPSKSWQYPFYASAVVQLIMATMIALWVEE 387
                 5666522279******************************************999999*****************9988766666999*************************99999999888887776 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0095
   TIGR00711  98 viQgfggglliplseslllseyppekrglalalvglavlvaPvlGPi 144
                 v+ g +++l  + +   +++  ppe+rg al+   l v+++  +GP 
  MMETSP1061-20121228|4042_1 531 VLGGCIASLPSVNVRPCIINVNPPESRGAALTAANLFVTLGRGIGPL 577
                 56677777778888999************************999995 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   2.5   4.6e-08   1.7e-05     221     322 ..     264     365 ..     142     380 .. 0.85
   2 ?   -3.5   0.3      0.95   3.5e+02     274     304 ..     441     473 ..     423     478 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 4.6e-08
   TIGR01299 221 lwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaamawaiiphygwsf 322
                 + g +ad   rk  +l +  + ++ + +s +   y  ++++rl sg  + g++p+ fs + +++++e r    s l  +  +g +     a  + p   w +
  MMETSP1061-20121228|4042_1 264 MIGFMADFYSRKHLFLACCILGALASAWSGWSSSYWSLFVARLCSGGCMSGSVPVAFSLLGDLFSKEERNAASSGLTSMMGLGIILGQIYAGEVGPSKSWQY 365
                 56789*****************************************************************99999988877777777777777777777765 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.95
   TIGR01299 274 pivfsyfaevlarek..rgehlswlcmfwmigg 304
                  ivf ++ ++l++ek    e  ++l+m++ +g 
  MMETSP1061-20121228|4042_1 441 GIVFVFLNDYLSQEKgfTVEEATFLVMLFGVGC 473
                 3899999*****999434688899999887764 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   4.2   1.5e-07   5.7e-05     143     267 ..     262     390 ..     249     393 .. 0.90
   2 ?   -2.5   0.1      0.91   3.4e+02     195     235 ..     573     613 ..     570     618 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.5e-07
   TIGR00898 143 slvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird...WRwLlllvslPlvlflvlv.wfvpESpR 267
                 s ++G ++D + Rk+++l  ++  a+ +  +  s +y+ + v rl +G  ++g+v+va+ L   + +k+ R  ++   +++  lG++l  + A  +     W+    ++++  ++++ ++ ++v+E +R
  MMETSP1061-20121228|4042_1 262 SGMIGFMADFYSRKHLFLACCILGALASAWSGWSSSYWSLFVARLCSGGCMSGSVPVAFSLLGDLFSKEERNAASSGLTSMMGLGIILGQIYAGEVGPsksWQYPFYASAVVQLIMATMIaLWVEEPIR 390
                 557899********************************************************************999999999999999999988766678**99999998888887776699999877 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.91
   TIGR00898 195 givvvalvLitEflpkkaRaivgilievffalGllllallA 235
                 gi + +++L   +   +    ++i   vf+++ ++ l +lA
  MMETSP1061-20121228|4042_1 573 GIGPLCITLLGSVFAASRQSSFSITLSVFWTIAAIQLLFLA 613
                 66677777777777777788889999999999999999988 PP

>> TIGR00805  oat: sodium-independent organic anion transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.2   2.2e-05    0.0082     310     411 ..     407     504 ..     362     527 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.2e-05
   TIGR00805 310 kklldkvkdflkiikrlltnklfmlvvlaqvidvlvvkglitFlpKyLEkqygvssakanlligvvnvpaaglgvligGlimkkfklnvkkaaklaillsll 411
                 ++ ++++  f+  + +  +n++++    +    +l    +++Fl+ yL ++ g++  +a++l+ ++ v   ++g ++gG++ + f    + ++ l ++  ++
  MMETSP1061-20121228|4042_1 407 YERRLTLNGFVDTMSKNASNWILLW---YGFFTSLPWGIVFVFLNDYLSQEKGFTVEEATFLVMLFGVG-CAIGGVTGGYLGQLFMKGDRSSLPLYMGATTF 504
                 5555666667777777777776554...3445566667789***********************99995.578999*****999988777777666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (868 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:00.73
# Mc/sec: 1569.40
//
Query:       MMETSP1061-20121228|4048_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.097    9.2   2.3       0.14    8.7   1.6    1.1  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.6   3.4e-05      0.14     311     352 ..      37      78 ..      29      85 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 3.4e-05
   TIGR02927 311 keaaaaeaaaaapaapaaakkapepekaklrGttqkvnrirq 352
                  +aa+a+aaaaa+a++a+a +a +++   l    +k+  ir+
  MMETSP1061-20121228|4048_1  37 DAAASASAAAAASASAASAASASDADVYLLSACHDKMPMIRD 78 
                 334455556666666666666688888888889999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1664.01
//
Query:       MMETSP1061-20121228|4046_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 2415.40
//
Query:       MMETSP1061-20121228|4045_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       307  (0.0748415); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.11s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 2481.40
//
Query:       MMETSP1061-20121228|4050_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1828.99
//
Query:       MMETSP1061-20121228|4052_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 1785.98
//
Query:       MMETSP1061-20121228|4051_1  [L=873]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-25   86.8   0.1    6.5e-25   85.5   0.0    1.6  2  TIGR02692 tRNA_CCA_actino: CCA tRNA nucleotidyltransferase
    2.6e-18   63.9   0.0    4.4e-18   63.1   0.0    1.3  1  TIGR01942 pcnB: poly(A) polymerase


Domain annotation for each model (and alignments):
>> TIGR02692  tRNA_CCA_actino: CCA tRNA nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.32   6.5e+02     381     422 ..      85     126 ..      73     131 .. 0.73
   2 !   85.5   0.0   3.2e-28   6.5e-25      84     268 ..     389     575 ..     378     589 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.32
   TIGR02692 381 ttrnkrkaerlqaaydeleeriaelaakedldkvrpdldGne 422
                 +tr  r +++lq+a d+ e r  + + k++ ++v  d   +e
  MMETSP1061-20121228|4051_1  85 STRIGRTSKALQMAVDSRELRFFSSSSKNNSNNVLGDYVNQE 126
                 467778899999999999999988888888887777665555 PP

  == domain 2    score: 85.5 bits;  conditional E-value: 3.2e-28
   TIGR02692  84 ekddeqveittfrsdaydrtsrkpevefGdtleedlirrdftvnalavrvaadgslefvdplg.Gledllakvldtpaapeksfsddplrmlraarfvsqlgfevaervl.aalkemaer..ierisaervraeldklllgeepeegidllvetglaevvlpeisalrleidehh..qhkdvyehsltvlr 268
                 ++    ++    r++ y ++sr p++    t  ed  rrd+t+n+l  +v++    ++ d +g G++dl+  v++tp ap +++ ddplr lr+ rf+++l f+++ + + aa+ +  ++   e++s er+  e+d +l + +p+ +++ll++ +la++v+p i ++  +  eh   ++ d+ e+ l +l 
  MMETSP1061-20121228|4051_1 389 KVGTFWIDFVNLRAEEYTEDSRIPDLMRIGTPAEDAFRRDLTINSLFYNVNNG---QVEDWTGrGFNDLRRCVIATPLAPLTTLLDDPLRTLRSVRFAARLHFTMDASLKeAAMDDRVRKalAEKVSRERIGCEVDLMLRSPDPVGAMRLLINLKLAKTVFP-IENFVTSGGEHRgaEKTDLLEKGLRLLS 575
                 555566788899**************9999********************998...889988769****************************************98876156877665533489************************************9.5666666666642244566666666665 PP

>> TIGR01942  pcnB: poly(A) polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   2.1e-21   4.4e-18      99     242 ..     403     550 ..     381     569 .. 0.84

  Alignments for each domain:
  == domain 1    score: 63.1 bits;  conditional E-value: 2.1e-21
   TIGR01942  99 skanaegrilkdnvyGsleEDalRRDFtvnaLyYDpskeeildyag.GveDlkarrlrligdpeerykeDPvRmLRalrlaakleftidektakpi.resv..slLkeisaaRlfeEilKllfsGkaaallkllseyklleplfPava 242
                  +  +++ri      G+  EDa RRD t+n+L+Y++++ ++ d++g G +Dl++  + +   p +   +DP R LR +r+aa+l+ft+d + +++   + v  +l +++s  R+  E+  +l s   + +++ll ++kl +++fP  +
  MMETSP1061-20121228|4051_1 403 EEYTEDSRIPDLMRIGTPAEDAFRRDLTINSLFYNVNNGQVEDWTGrGFNDLRRCVIATPLAPLTTLLDDPLRTLRSVRFAARLHFTMDASLKEAAmDDRVrkALAEKVSRERIGCEVDLMLRSPDPVGAMRLLINLKLAKTVFPIEN 550
                 455567888777778*****************************987***********9999999*************************998765144441134568999**********************************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.41
# Mc/sec: 2810.40
//
Query:       MMETSP1061-20121228|4053_1  [L=867]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.53
# Mc/sec: 2159.14
//
Query:       MMETSP1061-20121228|4055_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.5   0.2       0.05   11.0   0.1    1.2  1  TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily


Domain annotation for each model (and alignments):
>> TIGR01482  SPP-subfamily: sucrose-phosphate phosphatase subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.2e-05      0.05      66     142 ..      55     139 ..      41     145 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.2e-05
   TIGR01482  66 ilyneglddkflenleekwerdevvkktesfeelklqyeteqslvvvsegvdvdavrevikklglelkkv........ssGkdld 142
                 +l++e l ++  +   ek+ r+  + k++s ++lk +++ + ++   + ++    ++++++  g+++ +v        s + d++
  MMETSP1061-20121228|4055_1  55 VLFGETLTQHAYKHDREKYSRNLKKSKAKSESKLKSKSKSKTNTSWEGISKLEAICSKIEHDFGVKVSYVfcnrfedpSHRIDWH 139
                 7899999*******************************99999888888888889*************98877777776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1192.62
//
Query:       MMETSP1061-20121228|4054_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 1041.25
//
Query:       MMETSP1061-20121228|4057_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1794.07
//
Query:       MMETSP1061-20121228|4059_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 533.96
//
Query:       MMETSP1061-20121228|4058_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0081   13.3   0.0      0.013   12.6   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   3.2e-06     0.013      86     152 ..     225     292 ..     213     311 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.2e-06
   TIGR01983  86 vAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadl...eeilkecaellkpggilfls 152
                 +  +h+ ++++++ ++    + +  ++ ++++Dv++++ vl+ v+++    ++l  + ++l+pgg  f++
  MMETSP1061-20121228|4058_1 225 AIDIHSMEERIEEADFLELPLVH--ADPERRYDVIVCSMVLNCVTTPvdrGKMLALLYHQLRPGGLCFFT 292
                 55566667777766666555544..455689*************987332579999***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 2100.83
//
Query:       MMETSP1061-20121228|4060_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 890.93
//
Query:       MMETSP1061-20121228|4056_1  [L=1423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-12   42.3  69.8    2.2e-07   26.8  20.4    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    6.3e-10   35.2  71.4    1.5e-07   27.3  23.2    2.2  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.43    6.5  18.1     0.0044   13.1   4.6    2.2  2  TIGR00833 actII: transport protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8  20.4   1.6e-10   2.2e-07     696     936 ..     772    1008 ..     757    1018 .. 0.74
   2 !   21.0  23.6   9.5e-09   1.3e-05     246     885 ..    1014    1219 ..    1007    1240 .. 0.41

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 1.6e-10
   TIGR02168  696 aelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleel 936 
                  +  + +l e e e+++ +e+ +   +e  el+ +l++++k+   l+++++ l+ r ++   e  +l+ + e+ e++l e++++l+e+++++ + + +++++++++++lr++l ++ ++lt+ ++e+  +++++ +l++e+    ++++e+++q++ele+e e+++a i++++++le ++++ e+ll +k+ le+++a l+++  e++ ++++ +k+++e ++e  +l++kl++l++ + +l
  MMETSP1061-20121228|4056_1  772 SIVRGQLLESEAERTRCTEQDDGRLQEMSELRGRLDAQYKNWYDLTASQRLLATRHQEVVLEAGDLRGRLESDEAALRELTTRLEEKDRDLFATRGDVKEMEAAMEQLRSRLGQKDRNLTAVEKELVFNRQTRVKLQTEL----TKMREVADQKAELEKETEEMRALIRQYDDALEGAQNDSESLLVQKKDLEKEVAGLKANIGEMQLQIDTKDKELTEYREEEGNLETKLNNLREGMIGL 1008
                  44455566666777777777777777788888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888877777766565555555444....4567778888888888888888888888888888888888888888888888888888888888888888888888888888888888887776654 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 9.5e-09
   TIGR02168  246 eelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkeka 885 
                  +e++++++++e+l++e +ele +l++ r+ +  l                                                                                                                                                                                                                                                                                                                                                                                                                                              ++  e++ekl++el +++++++++ +e+er+++ ++q+ee ++++++ + e++ e+    e ++e++e +++ ++++ee+++ +e++++++++ +    e+e++l+e ++e+ae+e++   ++++ +++++++ +le+ +ee+++ +e+ + +ie l+++l+e+ +e++el  +  
  MMETSP1061-20121228|4056_1 1014 NEIQDLKNRIENLNKEKAELEVRLDNWRDGMLAL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V---KDKMEAIEKLKQELAHSQQEVDKAMNEIERARSGQNQAEELVRDKQHSIDEANPEEDG--ETIAELKEIIERMNRDLEENRNWVEAATRDIEQRKLYQVEAEKQLSERNTEIAELESK---MNEDQESAREMISRLESDLEEARKLVEEKTLQIEGLNAQLSEFLTEFKELRSSLP 1219
                  2333333333333333333333333333333221..........................................................................................................................................................................................................................................................................................................................................................................................................................................1...1222234444555555555555555555555555555555555555555554443332..2334444444444444445555555555555555444445555555444444444433...2333333333444444444444444444444444444444444444433333332 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3  23.2   1.1e-10   1.5e-07     687     969 ..     760    1038 ..     755    1042 .. 0.81
   2 !   12.9  25.4   2.6e-06    0.0035     237     444 ..    1013    1218 ..    1006    1241 .. 0.45

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.1e-10
   TIGR02169  687 Lereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleael..seekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkkelekveeele 969 
                  L++ ++   + l+ ++ +l e +++  +++++   + +e+++l+ + +++ ++  +l ++++ l    +e+  e  +l+ ++e+ e++l +l   le+ +++l   +  ++e+e+ +e+l+  + + +  l ++e+el  ++    + + + q++  +++e+ +qk+e+eke ee++a +++ +  le +++  + L  ++kdL+ke+  l+a++ e++ ++++ + e+ + r++  +l++kl++l e +  l +e  + +e+ + +  +e+++ke+ ++e +l 
  MMETSP1061-20121228|4056_1  760 LQKTEHGHNATLSIVRGQLLESEAERTRCTEQDDGRLQEMSELRGRLDAQYKNWYDLTASQRLLATRHQEVVLEAGDLRGRLESDEAALRELTTRLEEKDRDLfaTRGDVKEMEAAMEQLRSRLGQKDRNLTAVEKELVFNR----QTRVKLQTELTKMREVADQKAELEKETEEMRALIRQYDDALEGAQNDSESLLVQKKDLEKEVAGLKANIGEMQLQIDTKDKELTEYREEEGNLETKLNNLREGMIGLLKE--KINEIQDLKNRIENLNKEKAELEVRLD 1038
                  5555555556666667777788888888888888888899999999999999999999999999999999999999999999999999999999999988887224556888999999999999999999999998887776....66778888888999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988888875..566666678888899998888888876 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.6e-06
   TIGR02169  237 ekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerl.akaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeel 444 
                   ++++ +++++++l++e+++le+++++ ++ + ++ k+  e+ +k++++    q +v + ++e++  ++  ++a +  +++++ ++e + +++ + i +lke ie ++r++ee++   e+ +  ++++k  + e +++l e ++e ael  +++e +e   ++ ++l++   e ++l ee   ++ +++ l+a+l +   + +el ++l
  MMETSP1061-20121228|4056_1 1013 INEIQDLKNRIENLNKEKAELEVRLDNWRDGMLALVKDKMEAIEKLKQELAHSQQEVDKAMNEIERARSGQNQAEELVRDKQHSIDEANpEEDGETIAELKEIIERMNRDLEENRNWVEAATRDIEQRKLYQVEAEKQLSERNTEIAELESKMNEDQESAREMISRLESDLEEARKLVEE---KTLQIEGLNAQLSEFLTEFKELRSSL 1218
                  334444445555555555555555555555555544444444444544444444444444444444444444444444444444443331223344444444455555555555555555555555555544455555555555555555555444444444444444444444444332...23344444444444444444444433 PP

>> TIGR00833  actII: transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   4.6   3.2e-06    0.0044     457     656 ..     826    1032 ..     822    1039 .. 0.76
   2 ?   -1.6   2.7     0.092   1.3e+02     484     618 ..    1046    1181 ..    1031    1220 .. 0.53

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.2e-06
   TIGR00833  457 rpdgvvlkktkvsfqagelgdkldeatklleerldqllqdaeklaeaiaalrllqalmdllgenasqvvlavralqdalsklrdeaedvadiasPlrsalaaepeCrsdPvCrtareivqaadd....vvevaakladevg....dlartvatldsalkqvssllkaldglrtklaqmresaagv.adllneLsDyvktlgkvlgeaag 656 
                  r ++vvl+   +  +    ++ l e t+ lee+  +l   + +++e +aa+++l+  + +   n++ v ++++   ++  kl++e  ++ ++a+   + l+ e e     + +   ++  a++d    +v+ ++ l +ev     ++ ++ +++d + k+++   +    l+tkl ++re++ g+ ++++ne+ D  +++ ++ +e a+
  MMETSP1061-20121228|4056_1  826 RHQEVVLEAGDLRGRLESDEAALRELTTRLEEKDRDLFATRGDVKEMEAAMEQLRSRLGQKDRNLTAVEKELVFNRQTRVKLQTELTKMREVADQKAE-LEKETEEMRALIRQYDDALEGAQNDseslLVQ-KKDLEKEVAglkaNIGEMQLQIDTKDKELTEYREEEGNLETKLNNLREGMIGLlKEKINEIQDLKNRIENLNKEKAE 1032
                  556666666666666667788999************************************************99999999999999999999986544.44444444444555555777777777775232.33344444401114556667777888889999999999*************9636899*******999998887766 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.092
   TIGR00833  484 klleerldqllqdaeklaeaiaalrllqalmdllgenasqvvlavralqdalsklr..deaedvadiasPlrsalaaepeCrsdPvCrtareivqaaddvvevaakladevgdlartvatldsalkqvssllkaldg 618 
                   l +++++ + + +++la   +++++  + ++    + +q  + vr  q+++ + +  ++ e +a++ + + + ++   e + + v  ++r+i q +   ve  ++l++   ++a+  +++++  +    ++  l++
  MMETSP1061-20121228|4056_1 1046 ALVKDKMEAIEKLKQELAHSQQEVDKAMNEIERARSGQNQAEELVRDKQHSIDEANpeEDGETIAELKE-IIERMNRDLEENRNWVEAATRDIEQRKLYQVEAEKQLSERNTEIAELESKMNEDQESAREMISRLES 1181
                  556666777777777777776666655555666666666666666666666655431133333333322.3333444444444555555666666555555555555555566666666665555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       362  (0.0882496); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.03u 0.17s 00:00:01.20 Elapsed: 00:00:00.95
# Mc/sec: 1977.06
//
Query:       MMETSP1061-20121228|4063_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 677.54
//
Query:       MMETSP1061-20121228|4067_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.10s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 1128.51
//
Query:       MMETSP1061-20121228|4064_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.003   13.6   0.3      0.017   11.1   0.0    2.1  3  TIGR03502 lipase_Pla1_cef: extracellular lipase, Pla-1/cef family
  ------ inclusion threshold ------
      0.049   10.9   0.0        3.7    4.7   0.0    2.1  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase


Domain annotation for each model (and alignments):
>> TIGR03502  lipase_Pla1_cef: extracellular lipase, Pla-1/cef family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   8.2e-06     0.017     446     481 ..     114     149 ..      91     153 .. 0.82
   2 ?   -0.9   0.1     0.036        74     546     564 ..     232     250 ..     225     293 .. 0.68
   3 ?   -3.0   0.0      0.16   3.2e+02     513     526 ..     378     391 ..     375     394 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8.2e-06
   TIGR03502 446 WpvvivqHGitgaKenalavagtlaaaGvAtiaiDl 481
                  p v+++HG++g+ e+   + ++la++G  ++a  +
  MMETSP1061-20121228|4064_1 114 LPLVLFSHGLSGNMEMYTELCAQLASTGCVVVATEH 149
                 79******************************9876 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.036
   TIGR03502 546 vldaskvsflghSLGgIvg 564
                 v d +k++++ghS Gg + 
  MMETSP1061-20121228|4064_1 232 VTDPTKLHLVGHSFGGATQ 250
                 67889**********8542 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.16
   TIGR03502 513 lvaRDnlRQsilDl 526
                   aRD++ Qs++D+
  MMETSP1061-20121228|4064_1 378 YFARDSVHQSVSDT 391
                 579*********97 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0018       3.7       3      33 ..     115     144 ..     113     159 .. 0.82
   2 ?    3.9   0.0    0.0033       6.8      48      87 ..     213     252 ..     207     264 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0018
   TIGR03695   3 pvlvlLHGflgskedwqalieeleekfsvla 33 
                 p++++ HG+ g++e +++l ++l++ + +++
  MMETSP1061-20121228|4064_1 115 PLVLFSHGLSGNMEMYTELCAQLAS-TGCVV 144
                 678999****************954.44443 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0033
   TIGR03695  48 keakdfeeaaqellkelleklkiekviLvGYSlGGRiala 87 
                 ++++++e+  + +++++l+  + +k++LvG S GG   l 
  MMETSP1061-20121228|4064_1 213 NHPAATEADDESVIRKILSVTDPTKLHLVGHSFGGATQLL 252
                 5566666777888999999999*************76654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1819.85
//
Query:       MMETSP1061-20121228|4065_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1659.86
//
Query:       MMETSP1061-20121228|4072_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   14.2   0.0     0.0053   14.0   0.0    1.1  1  TIGR02587 TIGR02587: putative integral membrane protein TIGR02587


Domain annotation for each model (and alignments):
>> TIGR02587  TIGR02587: putative integral membrane protein TIGR02587
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.3e-06    0.0053      76     134 ..      39      98 ..      22     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-06
   TIGR02587  76 laigivvsaavLlllgiidaelslkeivgkvalq.svPaslGaaLaraqLGdssdaesle 134
                 +aig++++  v++ +g++  e   k+ vg+v++q s P     +++ +  G ++++++++
  MMETSP1061-20121228|4072_1  39 VAIGLLAAQLVVFNFGVVMFEEHSKHAVGQVVFQqSGPIPTKESFTSQSRGRQQQQQQQQ 98 
                 689******************************725688888888888888877665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 619.77
//
Query:       MMETSP1061-20121228|4073_1  [L=1191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-06   25.3   0.4    7.3e-06   23.7   0.0    2.1  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.2         1   4.1e+03      19      29 ..     873     883 ..     870     885 .. 0.84
   2 !   23.7   0.0   1.8e-09   7.3e-06       2      34 ..     891     923 ..     890     924 .. 0.95

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1
   TIGR00756  19 AlelfdeMker 29 
                 A+e++  Mk+r
  MMETSP1061-20121228|4073_1 873 AFEMLTMMKKR 883
                 89999999986 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 1.8e-09
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 +y +li+++++ g+++ A +l+ +M+e+giv d
  MMETSP1061-20121228|4073_1 891 AYQSLIDACGRVGDTKRASDLLARMHEDGIVAD 923
                 699***************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.63
# Mc/sec: 2495.22
//
Query:       MMETSP1061-20121228|4068_1  [L=649]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2953.83
//
Query:       MMETSP1061-20121228|4076_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 786.66
//
Query:       MMETSP1061-20121228|4075_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1897.91
//
Query:       MMETSP1061-20121228|4077_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 1231.90
//
Query:       MMETSP1061-20121228|4080_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    9.1   5.2       0.43    8.7   3.3    1.4  1  TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI


Domain annotation for each model (and alignments):
>> TIGR03142  cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.3   0.00011      0.43      61      91 ..      60      90 ..      38      95 .] 0.71

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00011
   TIGR03142 61 eaeaakaElerrLLadakeaeeeaasqakrs 91
                ++e+a+++ +rrLL++++ +++ +++q++++
  MMETSP1061-20121228|4080_1 60 NVERARIDYRRRLLREQQHQQQHQQQQHQQQ 90
                4589*************99999988843333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 447.82
//
Query:       MMETSP1061-20121228|4081_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 2054.75
//
Query:       MMETSP1061-20121228|4082_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.10s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 2003.41
//
Query:       MMETSP1061-20121228|4083_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.60
# Mc/sec: 1190.10
//
Query:       MMETSP1061-20121228|4085_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1963.84
//
Query:       MMETSP1061-20121228|4086_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1332.46
//
Query:       MMETSP1061-20121228|4092_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.09s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1515.75
//
Query:       MMETSP1061-20121228|4089_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-40  136.6   0.0    2.6e-38  130.0   0.0    2.1  1  TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase
    1.2e-33  114.6   0.0    2.9e-31  106.9   0.0    2.1  2  TIGR00434 cysH: phosophoadenylyl-sulfate reductase
    1.2e-30  104.4   0.3    1.7e-30  103.9   0.2    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
    5.8e-30  102.4   0.0    3.3e-29   99.9   0.0    2.0  2  TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent
    9.5e-11   39.8   0.1    2.5e-10   38.4   0.0    1.7  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    7.5e-08   30.1   0.0    1.2e-07   29.4   0.0    1.3  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    3.1e-07   28.4   0.0    7.2e-07   27.2   0.0    1.7  2  TIGR01068 thioredoxin: thioredoxin
  ------ inclusion threshold ------
      0.012   13.2   0.0      0.046   11.2   0.0    2.0  3  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB


Domain annotation for each model (and alignments):
>> TIGR02057  PAPS_reductase: phosphoadenosine phosphosulfate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.0   0.0     5e-41   2.6e-38       9     205 ..      56     262 ..      49     307 .. 0.84

  Alignments for each domain:
  == domain 1    score: 130.0 bits;  conditional E-value: 5e-41
   TIGR02057   9 ekleaqei..iaWsietlptlvlssafgiqalvilhllskil.....qeipvifiDtlylfpetlelvdelkeklkldlnlkkyda..veseaafeakyGklleekdvekydqiakvePlqralkeLnavawltGrrrdqasaranlkvleld.ekrgvlkvlPlidWtskqvyeylaahkvkynplfDqGylsvGDehstrkvkeg 205
                 ++le q +  +  s e+ ++ v   a+   ++vi+hll+++       + +++ +Dt +lfpet+e+ +e+++ +  d ++   ++  v  +aa++ +yG  l+++++e+yd++ kveP qr+lk L++ +++ Gr r q+ +ra ++++e   + +g  k +Pl+ Wt ++ ++y+a+ +v+++pl+ +Gy+s+GD + t ++ e+
  MMETSP1061-20121228|4089_1  56 KHLEEQAMyaLKISCENYGNAVFPNAMIAGDVVITHLLHRMGylkdsSKCKIMVVDTFHLFPETMEFLKEIEDFYGFDAEVFCAEGipVGDKAAYDKRYGADLWKENIEEYDRVCKVEPFQRGLKTLETDCMINGRTRWQGFERAWIDLFENApIGGGLAKCNPLAYWTLEDCFDYIAKYEVPHHPLHAKGYPSIGDAKDTIPIPED 262
                 555544441145577899999999999999********9987666668999*************************9999999998324678999*******************************************************9542567889***************************************99988654 PP

>> TIGR00434  cysH: phosophoadenylyl-sulfate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.9   0.0   5.6e-34   2.9e-31       8     194 ..      69     262 ..      62     278 .. 0.84
   2 !    5.8   0.0    0.0047       2.4     195     213 ..     283     307 ..     276     308 .. 0.69

  Alignments for each domain:
  == domain 1    score: 106.9 bits;  conditional E-value: 5.6e-34
   TIGR00434   8 aldtfpdelvlatsfGieglvlldlvski.....kkdievilldtgylfketyelieevkerykglnikvykpd....lseaeqeakyGdkLWekedlnkydqlrkvePlkralkeleasawlsGlRrdqsssRanlkvveldek.fellkvlPlidWtfkdvyqYleahnlpYnelfDqgYlsiGdahstrpvkeg 194
                 + ++++ + v   +  +  +v+ +l++++     + + +++++dt +lf+et+e+ +e+++ y  +  +v+ ++      +a  +++yG  LW+++ +++yd + kveP +r lk le   ++ G+ r q+ +Ra +++ e      +l k +Pl  Wt +d ++Y+ + ++p+++l+ +gY+siGda+ t p+ e 
  MMETSP1061-20121228|4089_1  69 SCENYG-NAVFPNAMIAGDVVITHLLHRMgylkdSSKCKIMVVDTFHLFPETMEFLKEIEDFYG-FDAEVFCAEgipvGDKAAYDKRYGADLWKEN-IEEYDRVCKVEPFQRGLKTLETDCMINGRTRWQGFERAWIDLFENAPIgGGLAKCNPLAYWTLEDCFDYIAKYEVPHHPLHAKGYPSIGDAKDTIPIPED 262
                 666676.44555556566677778887664433357899********************99876.99999998876656789999**********7.*****************************************999876514789******************************************99876 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0047
   TIGR00434 195 ederagRfkG......kakteCGlh 213
                   er+gRf G       +kteCG+h
  MMETSP1061-20121228|4089_1 283 ASERKGRFVGlanadgSTKTECGIH 307
                 678999997522222268******* PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.2   3.3e-33   1.7e-30      55     460 ..      19     424 ..       7     427 .. 0.79

  Alignments for each domain:
  == domain 1    score: 103.9 bits;  conditional E-value: 3.3e-33
   TIGR00424  55 svkplnaepkrkeslvlsaatvvaieveekvvevedfeklakklenaspleimdkalekfgndiaiafsgaedvalieyarltg.....rpfrvfsldtgrlnpetyrlfdavekqygirieymfpdavev..qalvrskglfsfyedghqeccrvrkvrplrralkglka..witgqrkdqspgtrseipvvqvdpvfegldggvgslvkwnpvanvegkdvwnflrtmdvpvntlhaqgyvsigcepctra......vlpgqhereg.rwwweda....kakecglhkgnikensledgavngeskaavadifesnnvvalsrqgienllkleerkeawlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfpkrssraikypsekrdvdslmsfv 460
                 +  p n  +  ++s+v+ aa   + e+       e  e   k+le+ + +  +  + e++gn +      a dv +    +  g        +++ +dt  l pet  ++  +e  yg   e +  + + v  +a   ++    ++++  +e  rv kv p++r lk l++   i g+ + q    r+ i + +  p+        g l k np+a    +d ++++   +vp   lha+gy sig    t +      v+  + + eg +  w d     k + +gl + +   +++   +v g  k+   d++e   v a+     +  l + +  ea ++ +yapwc+fcq me  +  +ae   gs + v kfr d  ++ef   +l+ +sfpt+ +  k     +ky se r  d++  fv
  MMETSP1061-20121228|4089_1  19 AFAPANRPAAVRNSVVPVAAEQFDQEQFI----AESKEMRLKHLEEQA-MYALKISCENYGNAVFPNAMIAGDVVITHLLHRMGylkdsSKCKIMVVDTFHLFPETMEFLKEIEDFYGFDAEVFCAEGIPVgdKAAYDKRYGADLWKENIEEYDRVCKVEPFQRGLKTLETdcMINGRTRWQG-FERAWIDLFENAPIG-------GGLAKCNPLAYWTLEDCFDYIAKYEVPHHPLHAKGYPSIGDAKDTIPipedgsVVFKDFKFEGdKTLWLDYaserKGRFVGLANADGSTKTECGIHVSGAEKTWDRDLWEEGSVKAIE--STDAALEVTKAGEASVIAIYAPWCQFCQKMEDDFAAFAE---GSDIPVYKFRGDE-EREFVSANLNTESFPTVNVV-KADGSVVKYESEDRSPDAIKKFV 424
                 55677777777888888877665544433....355666677777765.55677899*******99999999999988888776332224689**********************************9998323444444556799999********************86326777776665.468889887777763.......5689************************************8766654111122666677777734556654122255667887777777777778899998889999**999999986..56788999999********************99888876...9*********995.589**************987.666679*************9998 PP

>> TIGR02055  APS_reductase: adenylylsulfate reductase, thioredoxin dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.9   0.0   6.4e-32   3.3e-29       5     171 ..      85     259 ..      81     264 .. 0.86
   2 ?   -0.4   0.0      0.35   1.8e+02     175     194 .]     283     306 ..     279     306 .. 0.70

  Alignments for each domain:
  == domain 1    score: 99.9 bits;  conditional E-value: 6.4e-32
   TIGR02055   5 edlvlvdlia.....kvkkevevlfldtGrlfketlelidqveerYdieikvlapdek...eveeqvkeyGlnlfyrselrkeCCelRkvePLkraLegv..saWitGlRReqsptRakvallelDearkslvkvnPladwtleevweyikknelpvnpLherGYpsiGCepCtrpv 171
                  d+v+++l+      k + + +++++dt +lf et+e+ +++e+ Y+ + +v+  +     + ++++k+yG +l++++   +e  ++ kveP +r L+    +  i G  R q++ Ra + l e     ++l+k nPla wtle+  +yi+k e+p +pLh++GYpsiG +  t p+
  MMETSP1061-20121228|4089_1  85 GDVVITHLLHrmgylKDSSKCKIMVVDTFHLFPETMEFLKEIEDFYGFDAEVFCAEGIpvgDKAAYDKRYGADLWKEN--IEEYDRVCKVEPFQRGLKTLetDCMINGRTRWQGFERAWIDLFENAPIGGGLAKCNPLAYWTLEDCFDYIAKYEVPHHPLHAKGYPSIGDAKDTIPI 259
                 678888887611111456899*******************************99876511166789***********9..566667779********97511679****************************************************************99888877 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.35
   TIGR02055 175 edeRaGRWwwee....aakkeCGL 194
                 + eR+GR+ +      ++k+eCG+
  MMETSP1061-20121228|4089_1 283 ASERKGRFVGLAnadgSTKTECGI 306
                 57899999986512225799**95 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   4.9e-13   2.5e-10      10     103 ..     337     426 ..     329     428 .. 0.86

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 4.9e-13
   TIGR01126  10 vldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataeke.laskfkvsgfPtlkffkkgkkepvdyeG.eReaeelvefvee 103
                 v+++ ++ +++ yaPWC  C+k++  +   a+      +++ + k   ++e+e ++++++ ++fPt++++k++ +  v+ye  +R+ +++ +fv++
  MMETSP1061-20121228|4089_1 337 VTKAGEASVIAIYAPWCQFCQKMEDDFAAFAEG-----SDIPVYKFRGDEEREfVSANLNTESFPTVNVVKADGS-VVKYESeDRSPDAIKKFVAD 426
                 677889999***************999877753.....469********9976256789************9996.99**9868*********986 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   2.4e-10   1.2e-07     366     449 ..     344     425 ..     321     428 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 2.4e-10
   TIGR01130 366 VLvefYApWCGHCkkLapiYeelaekykkeedvviakl..dataNdvpe.fevegFPTilfvpagkksepvkyeg.dRtledlvkFik 449
                   + +YApWC  C+k++  +   ae     +d+ + k   d     v++  + e+FPT+  v+a+ +  +vkye+ dR+ ++++kF++
  MMETSP1061-20121228|4089_1 344 SVIAIYAPWCQFCQKMEDDFAAFAEG----SDIPVYKFrgDEEREFVSAnLNTESFPTVNVVKADGS--VVKYESeDRSPDAIKKFVA 425
                 5799*************999888875....4666777722444455666899************998..8***9989*********97 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.3   2.7e+03      33      60 ..     142     169 ..     137     171 .. 0.77
   2 !   27.2   0.0   1.4e-09   7.2e-07      10      97 ..     337     424 ..     328     428 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5.3
   TIGR01068  33 aPvleelakeleekvkvvKlnvdeeqei 60 
                  Pv +++a +++  +++ K n++e +++
  MMETSP1061-20121228|4089_1 142 IPVGDKAAYDKRYGADLWKENIEEYDRV 169
                 6888888888888899999999987765 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 1.4e-09
   TIGR01068  10 vassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqe.iaakygirsiPtlllfk.ngkevkrvvGakpkaalkeli 97 
                 v+++ ++ ++  +A+WC  C+ +   ++ +a  + +++ v+K   dee+e ++a+ + +s Pt+ ++k +g++vk      + +a+k+++
  MMETSP1061-20121228|4089_1 337 VTKAGEASVIAIYAPWCQFCQKMEDDFAAFA--EGSDIPVYKFRGDEEREfVSANLNTESFPTVNVVKaDGSVVKYESEDRSPDAIKKFV 424
                 44445578999*******************9..5678*********9988468899********88883566666655555566666665 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0         3   1.5e+03      58      71 ..       6      19 ..       4      23 .. 0.78
   2 ?   -2.8   0.0       1.9   9.9e+02      72     100 ..      55      82 ..      53      91 .. 0.72
   3 ?   11.2   0.0   8.9e-05     0.046      38      91 ..     330     382 ..     305     403 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 3
   TIGR02738 58 yqstCpyChqfapv 71
                + +t  yC  fa+ 
  MMETSP1061-20121228|4089_1  6 FTATALYCANFAAA 19
                6677789*999986 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.9
   TIGR02738  72 LkqlsqqtglevlayslDgkglaeFpdal 100
                 Lk+l++q+ +  l +s  + g a Fp+a+
  MMETSP1061-20121228|4089_1  55 LKHLEEQA-MYALKISCENYGNAVFPNAM 82 
                 56666665.45678999999999999987 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 8.9e-05
   TIGR02738  38 qdekpvgrkvlledyklvlfyqstCpyChqfapvLkqlsqqtglevlayslDgk 91 
                  +++ +    ++ +  ++ +y   C++C++ +  + ++++  +++v+ +  D +
  MMETSP1061-20121228|4089_1 330 STDAAL-EVTKAGEASVIAIYAPWCQFCQKMEDDFAAFAEGSDIPVYKFRGDEE 382
                 444443.445566778999***************************99976554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1490.09
//
Query:       MMETSP1061-20121228|4090_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.91    7.1   7.1          1    6.9   4.9    1.0  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.9   0.00026         1      97     225 ..       6     140 ..       4     154 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00026
   TIGR03354  97 yeirvsl.......aagaapafdelaptpetlvtaalqqvsseaseedlddslteagegaaprpapqaasldPlkald...qepasaadlddgalsaelaeevaealpadlasidae..stlepelaplpaaqpapapqeq 225
                 ++i vs+       a+++++ ++  + +++++v++ l   ss++s++   +  +++++++ap++ p++ ++ P k++    + p  +  l++  ++++ a++ ++ +  + ++++a+  + ++p+++p   a++ ++ +e+
  MMETSP1061-20121228|4090_1   6 FQIIVSIlvcfavaASAQENLQALDQHNGDIAVARGL---SSKKSKSPKSTKKSTKAPTKAPTKSPKK-TKSPKKSATpptNSPTKSPTLRP--TKNPTASPTKSPTLSPTKNPTASpiDNVVPTFEPTIFATESTTATET 140
                 6777777777777555556666666777788886555...4445555555555555555555555554.33333322200022222223344..55555555555333333333333233455555543333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.18
# Mc/sec: 1136.57
//
Query:       MMETSP1061-20121228|4091_1  [L=877]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 3307.27
//
Query:       MMETSP1061-20121228|4095_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.17
# Mc/sec: 450.32
//
Query:       MMETSP1061-20121228|4093_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.51
# Mc/sec: 1684.80
//
Query:       MMETSP1061-20121228|4094_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-23   80.6   7.0    2.2e-23   80.6   4.9    1.7  2  TIGR00400 mgtE: magnesium transporter


Domain annotation for each model (and alignments):
>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.2     0.035   1.4e+02      86     112 ..      12      37 ..       2      52 .. 0.71
   2 !   80.6   4.9   5.4e-27   2.2e-23     282     443 ..     125     285 ..     117     290 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.035
   TIGR00400  86 ilnkldlddlvdLLeelpaevveqlla 112
                   ++++l d ++ Lee ++++++ +++
  MMETSP1061-20121228|4094_1  12 YTENMSLRDSIRQLEEENERLKK-FVE 37 
                 56789999999999999888865.444 PP

  == domain 2    score: 80.6 bits;  conditional E-value: 5.4e-27
   TIGR00400 282 kkrvvWLlvLlvsstltasiissyedvlkkvvaLaafiPllidasGnaGaqssavvirgLakeevkvkdvlkvilreirvsilvGavlavvvavvavflqgdllvafvvassLfvsllvaklaGgllPivlkklkldPalmsgPlittladvlslliylnia 443
                 + r  WL+ Ll+++ l++ i+s  e +l +  ++  ++ ++++a+GnaG q+s  virg+a+++++ ++  + ++re++++  + ++l+   + +++f+++ +  a++v+++L +++  +  +G++lP++l+++ +dPa  s   i  + d+l++++ ++++
  MMETSP1061-20121228|4094_1 125 RDRAYWLVGLLIMQSLSGIILSRNELLLANHPVIIYYLTMMVGAGGNAGNQASVRVIRGIALGTLNERTRGQFLIRELKMAGTLSLILSAAAFCRTIFFKTPFPEAITVTAALSLIVFSSICLGAVLPLILERIGIDPAHSS-TTIQVIMDILGVALAVLVS 285
                 7899***************************************************************************************************************************************765.5799*******99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1379.06
//
Query:       MMETSP1061-20121228|4098_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.46
# Mc/sec: 1865.06
//
Query:       MMETSP1061-20121228|4097_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 2020.45
//
Query:       MMETSP1061-20121228|4096_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 321.36
//
Query:       MMETSP1061-20121228|4099_1  [L=1045]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1045 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.72
# Mc/sec: 1915.68
//
Query:       MMETSP1061-20121228|4103_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.17
# Mc/sec: 473.61
//
Query:       MMETSP1061-20121228|4104_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00049   17.7   0.0      0.062   10.9   0.0    2.8  3  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0097   13.0   0.0      0.029   11.4   0.0    1.7  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
  ------ inclusion threshold ------
      0.011   12.4   0.0      0.023   11.3   0.0    1.5  1  TIGR00959 ffh: signal recognition particle protein
      0.012   12.8   0.0      0.023   11.9   0.0    1.4  1  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
      0.022   11.8   0.0      0.033   11.2   0.0    1.2  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
      0.024   10.7   0.0      0.092    8.7   0.0    1.7  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
      0.026   12.6   0.0      0.062   11.4   0.0    1.6  1  TIGR02528 EutP: ethanolamine utilization protein, EutP
      0.052    9.0   3.6      0.065    8.7   2.5    1.3  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        2.4    4.5  19.8          4    3.8  13.8    1.3  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00014     0.062       4      27 ..      39      62 ..      37      68 .. 0.87
   2 ?    3.5   0.0     0.026        12      53      66 ..     218     231 ..     194     268 .. 0.76
   3 ?   -3.3   0.0       3.3   1.5e+03     112     124 ..     284     296 ..     277     310 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
   TIGR00231  4 ikivivGhvdvGKstLlnsllknk 27
                i +++vG  ++GK+tL+++l + +
  MMETSP1061-20121228|4104_1 39 ICVLVVGMAGSGKTTLMSQLQEST 62
                6799***************98776 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.026
   TIGR00231  53 ykvnllDTaGqedf 66 
                  ++ l+DT+Gq++ 
  MMETSP1061-20121228|4104_1 218 SEFLLVDTPGQIEA 231
                 57899*****8876 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 3.3
   TIGR00231 112 gvpiilvvnKiDl 124
                   p+++ +nK D 
  MMETSP1061-20121228|4104_1 284 RLPLVICFNKTDV 296
                 5799999***996 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   6.3e-05     0.029      70     102 ..      29      61 ..       3      67 .. 0.79
   2 ?   -3.8   0.0       2.7   1.2e+03     160     172 ..     216     228 ..     201     230 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.3e-05
   TIGR00064  70 lkelkeekkpnvillvGvNGvGKTttiaKlakl 102
                  ++++e+  p  +l+vG+ G+GKTt ++ l + 
  MMETSP1061-20121228|4104_1  29 QEQTPESPAPICVLVVGMAGSGKTTLMSQLQES 61 
                 3677899999***************99998765 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2.7
   TIGR00064 160 knidvvliDTaGR 172
                 +  +++l+DT G 
  MMETSP1061-20121228|4104_1 216 ELSEFLLVDTPGQ 228
                 3356788888876 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.1e-05     0.023      96     121 ..      35      60 ..      26      67 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.1e-05
   TIGR00959  96 ekkpavillvGLqGsGKtttaaKlak 121
                 + +p  +l+vG+ GsGKtt +++l +
  MMETSP1061-20121228|4104_1  35 SPAPICVLVVGMAGSGKTTLMSQLQE 60 
                 557999**************999865 PP

>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     5e-05     0.023     128     151 ..      39      62 ..      23      67 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5e-05
   TIGR03167 128 klvvlgGnTGsgKtelLeklaeag 151
                  +v++ G+ GsgKt+l+++l+e+ 
  MMETSP1061-20121228|4104_1  39 ICVLVVGMAGSGKTTLMSQLQEST 62 
                 345678***************983 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.3e-05     0.033     179     198 ..      39      58 ..       8      67 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.3e-05
   TIGR03819 179 lallvsGgtGsGkttLLsal 198
                 + +lv+G +GsGkttL+s l
  MMETSP1061-20121228|4104_1  39 ICVLVVGMAGSGKTTLMSQL 58 
                 578**************988 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0002     0.092     440     460 ..      41      61 ..      40      68 .. 0.83
   2 ?   -1.1   0.0      0.19        88     738     767 ..     185     215 ..     175     226 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0002
   TIGR00929 440 TlIfGptgsGKTvllnfllaq 460
                 +l++G+ gsGKT+l++ l  +
  MMETSP1061-20121228|4104_1  41 VLVVGMAGSGKTTLMSQLQES 61 
                 589************988655 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.19
   TIGR00929 738 qgessvvaelnLeg.gmkeylrvlSsdkesv 767
                 +++++++ +lnL++ ++++++r+l +++++ 
  MMETSP1061-20121228|4104_1 185 GPNGAIMTSLNLYAtKFDQVIRILEERADQK 215
                 578999********999*******9998865 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00014     0.062       3      27 ..      41      65 ..      40      68 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00014
   TIGR02528  3 imliGsvgcGkttLtqaLkgeeiky 27
                ++++G +g+GkttL+ +L++  i y
  MMETSP1061-20121228|4104_1 41 VLVVGMAGSGKTTLMSQLQESTIDY 65
                689*****************99988 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   2.5   0.00014     0.065     919     981 ..      67     132 ..      47     252 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00014
   TIGR00927 919 eeeedekdegeedeeeiaddeevkdetgeqelna...enqgeakedekGvdgeggsdGGdseeeee 981
                 ++++d++d++++d+++ +dd++++  tg+qe +a   e++++  +d++        +GG+s ++++
  MMETSP1061-20121228|4104_1  67 DDDDDDDDNDDDDNDDDDDDDNGERTTGNQESEAavgEDNDNNDDDNDRKPSAVTDEGGNSRQQQK 132
                 222222233333333334444444444444444311133333333333333334444555555444 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  13.8    0.0087         4     201     292 ..      60     152 ..      51     184 .. 0.44

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0087
   TIGR01651 201 eelgdd.eesedeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeadddd.lsdeddedaetpgeakrpdrpftdlne 292
                 e   d  ++++d++d+ddd+  +d+++++ge   +g+++s+a   e  +++ ++++ + + ++d++  s +++++ + p  +k++++ +  +  
  MMETSP1061-20121228|4104_1  60 ESTIDYdDDDDDDDDNDDDDNDDDDDDDNGER-TTGNQESEAAVGEDNDNNDDDNDRKPSAVTDEGgNSRQQQKQQQHPPRTKKSSKSMPAYCI 152
                 33334313333333444444444444444433.3333333333333333333344444444443331333444444445555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       370  (0.0901999); expected 82.0 (0.02)
Passed bias filter:                      261  (0.0636275); expected 82.0 (0.02)
Passed Vit filter:                        75  (0.0182838); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.50
# Mc/sec: 1129.83
//
Query:       MMETSP1061-20121228|4107_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 491.96
//
Query:       MMETSP1061-20121228|4108_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.35
# Mc/sec: 211.18
//
Query:       MMETSP1061-20121228|4106_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.54
# Mc/sec: 743.05
//
Query:       MMETSP1061-20121228|4109_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.25
# Mc/sec: 158.39
//
Query:       MMETSP1061-20121228|4110_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 532.67
//
Query:       MMETSP1061-20121228|4111_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|4113_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 752.34
//
Query:       MMETSP1061-20121228|4112_1  [L=766]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       407  (0.0992199); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.12s 00:00:00.57 Elapsed: 00:00:00.54
# Mc/sec: 1872.29
//
Query:       MMETSP1061-20121228|4116_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   14.0   2.8      0.012   13.8   1.9    1.1  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P
       0.13   10.4   6.1       0.18   10.0   4.2    1.4  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.9   5.7e-06     0.012      56      90 ..      10      44 ..       3      59 .] 0.37

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.7e-06
   TIGR03685 56 kaaaapvaaaaaaaaaaeaaeeekeeeeeeeeeke 90
                +aa++++a+aa aaaaa+ + + ++ +++ + +k+
  MMETSP1061-20121228|4116_1 10 SAAVVAAAVAALAAAAAAGTGDPSKPQHDADSKKG 44
                55544444444333333333333222222222222 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   4.2   8.8e-05      0.18      17      45 ..      15      43 ..       7      52 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 8.8e-05
   TIGR02811 17 glavgaaagavaaatgrvasasaaaepse 45
                ++av+a+a+a+aa+tg   + + +a++++
  MMETSP1061-20121228|4116_1 15 AAAVAALAAAAAAGTGDPSKPQHDADSKK 43
                67999999999999999666665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 278.12
//
Query:       MMETSP1061-20121228|4115_1  [L=1495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.14s 00:00:00.96 Elapsed: 00:00:00.93
# Mc/sec: 2121.76
//
Query:       MMETSP1061-20121228|4120_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1626.77
//
Query:       MMETSP1061-20121228|4124_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 520.62
//
Query:       MMETSP1061-20121228|4123_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1819.56
//
Query:       MMETSP1061-20121228|4129_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.89    7.0   4.5       0.98    6.9   3.1    1.1  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   3.1   0.00024      0.98      45      66 ..      90     111 ..      65     112 .] 0.87

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00024
   TIGR03789  45 iGlgsGallGavVgGPvGaiig 66 
                 +Glg G ++G +Vg PvG+ +g
  MMETSP1061-20121228|4129_1  90 VGLGVGLAVGLAVGTPVGTPVG 111
                 8999999999999999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 703.94
//
Query:       MMETSP1061-20121228|4122_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-47  158.5   1.0    6.7e-46  154.9   0.0    1.9  2  TIGR01327 PGDH: phosphoglycerate dehydrogenase
  ------ inclusion threshold ------
      0.033   10.7   0.0      0.058    9.9   0.0    1.3  1  TIGR03279 cyano_FeS_chp: putative FeS-containing Cyanobacterial-specific oxidoreductase


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.9   0.0   3.3e-49   6.7e-46      40     319 ..      90     374 ..      82     381 .. 0.88
   2 !    2.6   0.1    0.0047       9.7     452     502 ..     380     428 ..     371     454 .. 0.66

  Alignments for each domain:
  == domain 1    score: 154.9 bits;  conditional E-value: 3.3e-49
   TIGR01327  40 dydalivRSatkvteelleaaekLkvigRaGvGvDNidieaatkkGilvvNaPegntisaaElalalllalaRkipqadksvk........ek..kWerkkflGtElygktlGviGlGriGsevakrakalgmkvlayDPyiseekaekl..gvellkdldellaeaDvitvHvPltk...etkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPptdnklleldnvvvtpHlgAsteEaqenvavevaeevlealkgevvesavNlpaldaee 319
                 +++a+++RS+   ++++    + ++ i+R G G +Ni ++  t+ Gi v N+P +n  ++ El l  +l  +Rki +  +++k        ++  + ++  f G+E++gktl viGlG+iG   a+ a++lgmkv +yDP +s + a kl   ++l++++   ++ aD i++ +P  k    t+g+igk+ +++  ++++++N aRG ++  +A+ e l++g+ + ++     + P  ++ l +++n +v pHlgAsteEa +++a   a+ ++++l++ +  ++vN p ++ ++
  MMETSP1061-20121228|4122_1  90 NAHAILLRSHKLQEDDVP---QTVRAIARCGAGTNNIPVPRMTELGIPVFNTPGANANAVKELVLCGMLLGSRKIVDGINHMKdlgaqglaRErvEKDKAMFGGQEIKGKTLAVIGLGHIGAMTARDAEGLGMKVKGYDPGLSVQSAMKLprDMNLVDSITAAVSGADYISINIPYVKgenGTHGIIGKDVIEHFSPNAVLLNFARGELVCSDAMKEFLDSGNGKYVT-----DFP--EDLLWDHENCIVLPHLGASTEEAEDAAASMAADTIRNYLENGTIVNSVNFPDTQLDD 374
                 679999999866666664...56899*************************************************98877766222222222212467788*************************************************4447888999999999*********8653226****************************************977553.....335..789************************************************988775 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.0047
   TIGR01327 452 illiiknkDkpGvigkvgsllgeagiNiasmqlgrkekggealmllslDee 502
                 +   + nk++pG+++ +++++++ g+Ni +  +  +++g+ a  +  +D +
  MMETSP1061-20121228|4122_1 380 VRFTVVNKNVPGALAAITEAISSEGLNIVQQ-I-NHSRGDVAYNVCDIDTK 428
                 456678999******************9653.2.23344455555555554 PP

>> TIGR03279  cyano_FeS_chp: putative FeS-containing Cyanobacterial-specific oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   2.9e-05     0.058     195     255 ..      44     104 ..      37     114 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 2.9e-05
   TIGR03279 195 alertlrdlaefadgdvpavlsvavvpvGltrfrpeedeltpvteekakkviaqvealqke 255
                    +t  d+ ++++g+        + p+Gl+rf  ++ ++++ + ++a++++ + ++lq++
  MMETSP1061-20121228|4122_1  44 GSWQTYGDIDNYEQGKYQIKTFNKISPIGLARFHKDQYDVRSGDAANAHAILLRSHKLQED 104
                 556899999999999999999999**********************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.18s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 1946.84
//
Query:       MMETSP1061-20121228|4131_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1727.17
//
Query:       MMETSP1061-20121228|4132_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 2700.43
//
Query:       MMETSP1061-20121228|4128_1  [L=906]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.7   0.6      0.053   10.8   0.4    1.3  1  TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family
       0.04   11.9   0.0        0.1   10.6   0.0    1.6  1  TIGR01827 gatC_rel: putative Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C


Domain annotation for each model (and alignments):
>> TIGR02163  napH_: ferredoxin-type protein, NapH/MauN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.4   2.6e-05     0.053     202     240 ..      26      64 ..       9      67 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.6e-05
   TIGR02163 202 kCdkCmdClevCpekqvlelalkkeestlvlsgdCisCg 240
                 k  +C++C + C +k+ l+++  ++e+ +v++g C++C 
  MMETSP1061-20121228|4128_1  26 KRGECVTCGRKCFKKKFLKMIPIDDEEGKVVNGRCLNCN 64 
                 556899********************************6 PP

>> TIGR01827  gatC_rel: putative Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   4.9e-05       0.1      36      68 ..      25      59 ..      19      61 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 4.9e-05
   TIGR01827 36 lREDeeeksdpe.fkeklLknAP.vdddGyvvvEr 68
                l+  e + + +  fk+k+Lk  P  d++G vv  r
  MMETSP1061-20121228|4128_1 25 LKRGECVTCGRKcFKKKFLKMIPiDDEEGKVVNGR 59
                5556667776644**********556689999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.49
# Mc/sec: 2440.45
//
Query:       MMETSP1061-20121228|4133_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17    7.4   3.1       0.24    6.9   2.2    1.1  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
       0.43    7.6   6.9       0.56    7.2   3.8    1.9  2  TIGR03133 malonate_beta: malonate decarboxylase, beta subunit
        5.5    3.0   8.5        9.5    2.2   5.9    1.3  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.2   0.00018      0.24     412     470 ..     496     554 ..     467     565 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00018
   TIGR01522 412 sserkymavkvltdskkivfvkGateqvleyctsylkkdGkteklteeqkekiqeeaae 470
                   er  m+v+ l+ +k++  +kG +++ le c+  ++++ ++++ +++q+++ q+++++
  MMETSP1061-20121228|4133_1 496 RCERVSMLVRELYPHKQVFQLKGGIQRYLETCAEQQQQQQQQQQQQQQQQQQQQQQQQQ 554
                 568999***************************99998877666666655555554443 PP

>> TIGR03133  malonate_beta: malonate decarboxylase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.46   6.2e+02     201     253 ..     106     157 ..     103     176 .. 0.55
   2 ?    7.2   3.8   0.00041      0.56     191     266 ..     484     560 ..     473     566 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.46
   TIGR03133 201 Ggkqrflsgdadvlveddvaalraaviallaksieaakrlesaalvaeqlrle 253
                 Gg+ r+ ++ ++  ++ + + lra  +a+ ++ +   + ++s+++ +++ + e
  MMETSP1061-20121228|4133_1 106 GGRIRVSTEGVNGVLSGKHDVLRAYESAMSEA-LGCIAGSKSESFNERKSKSE 157
                 88889999999988888887777655544433.23333333333333333322 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00041
   TIGR03133 191 kdralvwrvtGgkq.rflsgdadvlveddvaalraaviallaksieaakrlesaalvaeqlrleldlakqiaaedar 266
                 kd+ +++ + G +  r+ +   + + + +v +l+  ++ +l++  e++++ ++++ +++q++ +++ ++q++ ++++
  MMETSP1061-20121228|4133_1 484 KDQIFMYCTGGVRCeRVSMLVRELYPHKQVFQLKGGIQRYLETCAEQQQQQQQQQQQQQQQQQQQQQQQQQQQQEKN 560
                 7888888888888515555555677788999**********999877777777776666666455544444444443 PP

>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   5.9     0.007       9.5     660     703 ..     523     566 ..     500     580 .. 0.54

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.007
   TIGR04154 660 llveveeeeaseqslkvetkeeeenaseaeaaaeadnaasaaea 703
                 +l++ +e+++++q++++++++++++ ++++++++++++++++++
  MMETSP1061-20121228|4133_1 523 YLETCAEQQQQQQQQQQQQQQQQQQQQQQQQQQQQEKNQQRSNN 566
                 33444444444444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       634  (0.154559); expected 82.0 (0.02)
Passed bias filter:                      212  (0.0516821); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.20s 00:00:00.85 Elapsed: 00:00:00.70
# Mc/sec: 1346.29
//
Query:       MMETSP1061-20121228|4134_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 1126.03
//
Query:       MMETSP1061-20121228|4130_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 883.31
//
Query:       MMETSP1061-20121228|4136_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.3   1.0      0.035   11.2   0.7    1.0  1  TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I


Domain annotation for each model (and alignments):
>> TIGR01824  PabB-clade2: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.7   8.6e-06     0.035     118     171 ..      22      75 ..      15      84 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.6e-06
   TIGR01824 118 aNlsrrltariaaevdplalfealraanpapyailleepgvdvvsaSPElllkr 171
                 +N    ++a+++++vdp+ ++++ +   p++ +++ ++p     saSP  l + 
  MMETSP1061-20121228|4136_1  22 VNANANVNANVNVNVDPFCVYARVESCTPMASMTMATTPTHTPTSASPSSLSHW 75 
                 455566778888************************************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|4139_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.7e-124  412.4   0.2   4.3e-124  412.2   0.1    1.0  1  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
    1.7e-80  268.9   4.4    4.3e-80  267.5   3.0    1.5  1  TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase
    5.3e-78  260.5   2.0    6.6e-78  260.2   1.4    1.1  1  TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA
    1.3e-52  177.2   2.0    1.3e-25   88.2   0.0    3.0  3  TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI
  ------ inclusion threshold ------
       0.26    7.7   4.3        2.8    4.4   0.8    2.9  3  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II


Domain annotation for each model (and alignments):
>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.2   0.1  5.2e-127  4.3e-124       1     385 []      21     394 ..      21     394 .. 0.96

  Alignments for each domain:
  == domain 1    score: 412.2 bits;  conditional E-value: 5.2e-127
   TIGR01930   1 ivdavRtpig.klggslkelsaedLlaavikelleragldpekidevilGnvlqageqaniaReaalaaglp.esvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpillkaslrreslklgkakledqllkdlvktklsmgetAenlakkygisReeqDeyalrShqkaakAieegkfkdeivpvevkgkkkvvskDegirpnttlekLakLkpafkekkgstvtAgNssqlnDGAaalllmseevakelgltplarivsaavagvdpeemglgpvpAiekaLkkaglsisdidlvEinEAFAaqvlavekelgsldlekvNvnGGAiAlGHPlGasGarivltllkeLkergkkyGlatlCvggGqGaAvile 385
                 iv+a+Rtp + + +g+l+++++++Ll++v+++ l+r+g+  e+i++++lGn l   ++ + +R+a + ag++ e++p   +nr+C+SglqAva +a+++++G++ + + GGvEsmS++p+++ ++    +++ +++k+++ +++ + ++ ++mg+t++n+  +yg++Re++De+a++Shqkaa+A ++g+f +eivpv        v +D+girp+ttl  L+kLkp+f e +g+ +tAgNssq++DGAaa+l+++++ a++ gl +l+ ++++av gv+p++mg+gp+ Ai+++Lk+ glsi did++EinEAFA+q+  +++ l+ +d+++vN nGGAiAlGHPlG++Gar ++tll+eL++ ++++G++++C+g+G+GaA++le
  MMETSP1061-20121228|4139_1  21 IVSALRTPLCrSRKGALAKTPPSTLLSTVLEATLKRTGVRGEDIEDLVLGNCLLPPSGYAAMRMAQVVAGIDaETTPLAWINRQCSSGLQAVACVADNVASGKIAMGIGGGVESMSTTPMSSIKA---PDVDWNAMKRAHPTTR-VMDCLIPMGVTSDNIVSQYGLKREHLDEFAAESHQKAAAARAAGRFCNEIVPVGD------VREDDGIRPRTTLPILSKLKPVFSE-DGK-TTAGNSSQTTDGAAAVLVTTRAEAQKRGLPVLGIWRGYAVKGVPPRVMGIGPAVAIPAVLKQCGLSIGDIDVWEINEAFASQASWCIDVLN-IDPARVNPNGGAIALGHPLGCTGARQIATLLNELHRTKQRFGVVSMCIGTGMGAAAVLE 394
                 8**********88**********************************************************835788999***************************************987775...7888888888885555.4669************************************************754......579********************96.9*7.*******************************************************************************************.88*******************************************************97 PP

>> TIGR02430  pcaF: 3-oxoadipyl-CoA thiolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.5   3.0   5.2e-83   4.3e-80       2     398 ..      18     394 ..      17     395 .. 0.92

  Alignments for each domain:
  == domain 1    score: 267.5 bits;  conditional E-value: 5.2e-83
   TIGR02430   2 evyivdairtpiGry.gGslssvraddlaavplkallarnpsldaaaiddvilGcanqaGednrnvarmaallaGlpvs.vpgttvnrlcgsgldalglaaraikaGeadlviaGGvesmsrapfvlGkadsa.fsrsakledttiGwrfvnpklkalyGvdsmpetaenvaeefgvsredqdafalrsqqrtaaaqakGffaeeivpveikqkkGeetvvdkdehlraettlealaklkavvredgtvtaGnasGvndGaaalllaseeavkrhgltprarilaaasaGveprvmGlgpvpavkkllaraglsledldvielneafaaqalavlrelgladddarvnpnGGaialGhplGasGarlvltalkqleksggryalatlciGvGqGialvie 398
                 +v iv a+rtp+ r   G+l++     l +  l+a l+r   +  + i+d++lG             rma ++aG+ ++  p + +nr c+sgl+a++++a  +++G+  + i GGvesms +p    ka  + +   ++ + t           + +  +  m+ t++n+ +++g++re  d+fa  s q++aaa+a+G f +eivpv      G    v +d+  r+ ttl  l+klk+v+ edg  taGn+s   dGaaa+l+++   ++++gl   +   ++a  Gv prvmG+gp+ a+  +l++ gls+ d+dv e+neafa+qa  ++  l +  d arvnpnGGaialGhplG +Gar ++t+l++l+++++r++++++ciG G G a v+e
  MMETSP1061-20121228|4139_1  18 DVVIVSALRTPLCRSrKGALAKTPPSTLLSTVLEATLKRT-GVRGEDIEDLVLGNCLLPP-SGYAAMRMAQVVAGIDAEtTPLAWINRQCSSGLQAVACVADNVASGKIAMGIGGGVESMSTTPMSSIKAPDVdWNAMKRAHPT----------TRVMDCLIPMGVTSDNIVSQYGLKREHLDEFAAESHQKAAAARAAGRFCNEIVPV------G---DVREDDGIRPRTTLPILSKLKPVFSEDGKTTAGNSSQTTDGAAAVLVTTRAEAQKRGLPVLGIWRGYAVKGVPPRVMGIGPAVAIPAVLKQCGLSIGDIDVWEINEAFASQASWCIDVLNI--DPARVNPNGGAIALGHPLGCTGARQIATLLNELHRTKQRFGVVSMCIGTGMGAAAVLE 394
                 689**********9637******************99886.689999*******876654.456778*********876167889***************************************99888854414444444444..........455555567999******************************************9......5...4788999*************************************************************************************************************99877..89****************************************************9998 PP

>> TIGR02445  fadA: acetyl-CoA C-acyltransferase FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.2   1.4     8e-81   6.6e-78       1     383 [.      18     394 ..      18     396 .. 0.90

  Alignments for each domain:
  == domain 1    score: 260.2 bits;  conditional E-value: 8e-81
   TIGR02445   1 dvvivdalrtpmgrskggafrntraedlsahllkkllarnpkveaaevediywgcvqqtleqgfniarnaallaevphev.aavtvnrlcgssmqalhdaaraimtgdaevcliggvehmghvsmsh....gvdfhpgl....skhvakaagmmgltaemlgklhgisreqqdafaarsharahaatlegkfkneiiptegydadgvlkvldydevirpettvealaalrpafdpkngtvtagtssalsdgasamlvmseeraqelgvkprarirsmavagvdpsimgygpvpatkkalkraglsisdidvlelneafaaqalpvlkdlglldkldekvnlnggaialghplgcsgaristtllnlmerkdakfglatmciglgqgiatvfe 383
                 dvviv alrtp+ rs+ ga  +t    l + +l++ l+r   v   ++ed++ g        g+   r+a ++a++  e+ +   +nr c s +qa+   a  + +g+  + + ggve m   +ms      vd +       + +v  +   mg+t++ +   +g+ re+ d+faa sh++a aa   g+f nei+p++             d+ irp tt+  l++l+p+f   +g  tag ss+ +dga+a+lv +   aq+ g+ ++   r+ av gv p +mg gp  a    lk++glsi didv e+neafa+qa  ++  l   +    +vn nggaialghplgc+gar  +tlln ++r + +fg+ +mcig g g a+v+e
  MMETSP1061-20121228|4139_1  18 DVVIVSALRTPLCRSRKGALAKTPPSTLLSTVLEATLKRT-GVRGEDIEDLVLGNCL-LPPSGYAAMRMAQVVAGIDAETtPLAWINRQCSSGLQAVACVADNVASGKIAMGIGGGVESMSTTPMSSikapDVDWNAMKrahpTTRVMDCLIPMGVTSDNIVSQYGLKREHLDEFAAESHQKAAAARAAGRFCNEIVPVGDV---------REDDGIRPRTTLPILSKLKPVFS-EDGKTTAGNSSQTTDGAAAVLVTTRAEAQKRGLPVLGIWRGYAVKGVPPRVMGIGPAVAIPAVLKQCGLSIGDIDVWEINEAFASQASWCIDVL---NIDPARVNPNGGAIALGHPLGCTGARQIATLLNELHRTKQRFGVVSMCIGTGMGAAAVLE 394
                 79************************99999999999996.6999******999543.3468**************987615677****************************************86333357766533100033455555669********************************************9754.........45789*****************7.68999*************************************************************************************9654...445689****************************************************98 PP

>> TIGR02446  FadI: acetyl-CoA C-acyltransferase FadI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.2   3.3e-16   2.7e-13       3     132 ..      13     144 ..      11     166 .. 0.90
   2 !   88.2   0.0   1.6e-28   1.3e-25     176     351 ..     167     334 ..     148     337 .. 0.92
   3 !   40.7   0.3   4.2e-14   3.4e-11     369     430 .]     335     396 ..     330     396 .. 0.97

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 3.3e-16
   TIGR02446   3 trqgeriaivaglrtpfarq.atafhgipavdlgkmvvsellarseidaklieqlvfgqvvqmpeapniareivlgtgmnvhtdays.vtracatsfqsavnvaesimagaieigiaggadsssvlpigvsk 132
                 t+  + + iv+ lrtp++r    a+ + p   l   v++  l r+ +  + ie+lv g+ +  p      r   + +g++ +t   + + r c++ +q+++ va+ + +g+i +gi gg +s s  p+   k
  MMETSP1061-20121228|4139_1  13 TKDPNDVVIVSALRTPLCRSrKGALAKTPPSTLLSTVLEATLKRTGVRGEDIEDLVLGNCLLPPSGYAAMRMAQVVAGIDAETTPLAwINRQCSSGLQAVACVADNVASGKIAMGIGGGVESMSTTPMSSIK 144
                 6667889**********99625799*************************************9999999999999999999988665399***********************************9987555 PP

  == domain 2    score: 88.2 bits;  conditional E-value: 1.6e-28
   TIGR02446 176 lsmgqtaeqmaktygitraeqdalahrshtlaaqawadgklkeevmtafvepykkfiaednnirenssladyaklrpafdrkygsvtaanstpltdgaaavilmsegrakelgleilgyirsyaftaidveqdmllgpsyatplalkraglelsdltlidmheafaaqtlanvkll 351
                 + mg t++++   yg+ r++ d +a  sh++aa a a g++ +e++          + ed+ ir  ++l   +kl+p f    g  ta ns+  tdgaaav++ + + a++ gl +lg  r+ya   +   + m +gp+ a p +lk++gl++ d+ + ++ eafa+q+   +++l
  MMETSP1061-20121228|4139_1 167 IPMGVTSDNIVSQYGLKREHLDEFAAESHQKAAAARAAGRFCNEIVP-----V-GDVREDDGIRPRTTLPILSKLKPVFSE-DGKTTAGNSSQTTDGAAAVLVTTRAEAQKRGLPVLGIWRGYAVKGVPP-RVMGIGPAVAIPAVLKQCGLSIGDIDVWEINEAFASQASWCIDVL 334
                 57*****************************************9864.....3.35899********************85.699****************************************99875.6799*********************************97777665 PP

  == domain 3    score: 40.7 bits;  conditional E-value: 4.2e-14
   TIGR02446 369 eidmskfnvlggsiayghpfaatgarlitqtlrelkrrggglglatacaagglgaamileve 430
                 +id  + n  gg+ia ghp+ +tgar i+  l+el+r    +g+++ c   g+gaa +leve
  MMETSP1061-20121228|4139_1 335 NIDPARVNPNGGAIALGHPLGCTGARQIATLLNELHRTKQRFGVVSMCIGTGMGAAAVLEVE 396
                 79999*******************************************************98 PP

>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.8    0.0034       2.8     157     193 ..     101     137 ..      76     145 .. 0.81
   2 ?    2.3   0.0     0.015        12     230     296 ..     254     315 ..     252     326 .. 0.84
   3 ?   -0.1   0.0     0.078        64      92     117 ..     370     398 ..     347     412 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0034
   TIGR03150 157 vvtACatgthaigeaarlikegeadvmiagGaeaait 193
                 +   C++g +a++  a+ +++g++ + i gG e++ t
  MMETSP1061-20121228|4139_1 101 INRQCSSGLQAVACVADNVASGKIAMGIGGGVESMST 137
                 4567*****************************8765 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.015
   TIGR03150 230 geGagvlvlEelehAkaRgAkiyaevvGyglsaDAyHitapaeegegaaramkaalkdaglkpeevd 296
                 ++Ga+ +++ +  +A++Rg  +++   Gy++ +       p+  g g a a+ a lk+ gl+  ++d
  MMETSP1061-20121228|4139_1 254 TDGAAAVLVTTRAEAQKRGLPVLGIWRGYAVKG-----VPPRVMGIGPAVAIPAVLKQCGLSIGDID 315
                 58**********************999998876.....56777888888888888888888877776 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.078
   TIGR03150  92 eedaervgv...ivgsGiGGletieeqak 117
                 + +++r+gv   ++g+G+G   ++e + +
  MMETSP1061-20121228|4139_1 370 HRTKQRFGVvsmCIGTGMGAAAVLEVEPQ 398
                 33444544422268999998887775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.45
# Mc/sec: 1220.17
//
Query:       MMETSP1061-20121228|4138_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 1162.36
//
Query:       MMETSP1061-20121228|4141_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 345.69
//
Query:       MMETSP1061-20121228|4137_1  [L=1518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       345  (0.0841053); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.17s 00:00:01.01 Elapsed: 00:00:00.76
# Mc/sec: 2636.31
//
Query:       MMETSP1061-20121228|4140_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-13   48.0   0.1    3.8e-13   47.6   0.1    1.1  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
     0.0098   13.8   0.0      0.012   13.5   0.0    1.1  1  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase
  ------ inclusion threshold ------
      0.029   11.5   0.1      0.049   10.8   0.0    1.4  1  TIGR03448 mycothiol_MshD: mycothiol synthase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.1   2.8e-16   3.8e-13      53     132 .]       8      88 ..       5      88 .. 0.91

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 2.8e-16
   TIGR01575  53 ldeaeilniavkpeyqgqGiGraLlkelikeakerg.vkeifLEVResNvaAqaLYk.klgfkeialrknYYkdseedAlvM 132
                  + ++i+++ v    +++Gi++aL+++  ke+++    +++ L VR+sN aA +LY   l ++  ++ k YY d+e dA+ M
  MMETSP1061-20121228|4140_1   8 PKHGHITSLSVLRTHRKRGIATALMRRSQKEMADVFgSEYVSLHVRKSNRAAFHLYSvTLQYEVNDIEKGYYADGE-DAYDM 88 
                 5789***********************99999887559******************84579*************98.**976 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   8.8e-06     0.012      90     152 ..      25      88 ..       8      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.8e-06
   TIGR03585  90 kgkGsvleealleyafeklklkkLkleVlesNekalklye.kfgfelegvlkqfiakegeevdv 152
                  g+   l+   ++ + + ++ + ++l+V +sN +a++ly  + ++e+ +++k++ a  +  +d+
  MMETSP1061-20121228|4140_1  25 RGIATALMRRSQKEMADVFGSEYVSLHVRKSNRAAFHLYSvTLQYEVNDIEKGYYADGEDAYDM 88 
                 5777889999999999999********************84679*********99988888776 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.6e-05     0.049     225     287 ..       7      71 ..       2      78 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.6e-05
   TIGR03448 225 epelgEvYvvgvdpaaqgrGLGkaLtliGlkhleer.glravlLYveadneaAvrtYe.kLgFtv 287
                 +p+ g +  ++v  + ++rG+  aL++   k +++  g + v L v + n+aA ++Y+  L ++v
  MMETSP1061-20121228|4140_1   7 QPKHGHITSLSVLRTHRKRGIATALMRRSQKEMADVfGSEYVSLHVRKSNRAAFHLYSvTLQYEV 71 
                 37778888888888888888888888888888888768888888888888888888863466665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 576.98
//
Query:       MMETSP1061-20121228|4144_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.08s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 534.56
//
Query:       MMETSP1061-20121228|4143_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.46
# Mc/sec: 1374.41
//
Query:       MMETSP1061-20121228|4152_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 703.94
//
Query:       MMETSP1061-20121228|4150_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    5.9  17.7        1.7    5.6  12.3    1.4  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  12.3   0.00041       1.7     162     229 ..      76     142 ..       3     144 .] 0.76

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00041
   TIGR03752 162 gdkaqseskdevvwvepsdakatdregkksapskesfptsfdnalkrkkkaleavakaeeaekakske 229
                 ++++q+ ++ +++ ++p+++kat++   k+++s   fp++++ a +++++++++++++++++++++++
  MMETSP1061-20121228|4150_1  76 EQQQQF-QRPKLRSIAPKETKATPQPAPKKKSSVVVFPKNYGAAKQQQQQQQQQQQQQQQQQQQQQQQ 142
                 333344.599****************99*************666666666666555555444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       499  (0.121648); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 633.55
//
Query:       MMETSP1061-20121228|4147_1  [L=2968]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2968 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.01u 0.17s 00:00:01.18 Elapsed: 00:00:00.80
# Mc/sec: 4896.80
//
Query:       MMETSP1061-20121228|4157_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1045.76
//
Query:       MMETSP1061-20121228|4153_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 2155.82
//
Query:       MMETSP1061-20121228|4155_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-39  130.8   0.2    1.2e-38  130.5   0.1    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
      7e-19   66.0   0.0    9.8e-19   65.5   0.0    1.1  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    2.2e-12   45.0   1.4    1.3e-11   42.5   0.9    1.9  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    8.7e-05   20.1   0.3    0.00015   19.3   0.0    1.5  2  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.5   0.1   1.1e-41   1.2e-38       1     183 [.      47     228 ..      47     230 .. 0.98

  Alignments for each domain:
  == domain 1    score: 130.5 bits;  conditional E-value: 1.1e-41
   TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskflpflvqllvgGvdeegpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkd 183
                 gtT+vG++ kdgvvl ad+ra+ g+ va+kn  K++ +++++   +aG+ +d   +++l++ +++l +++++ +  v ++ tll   l +++     + +++gG+d +gp++y++ p Gs+ + +yt++GsGs  a++++e++++ed++  ea++l+ + i + i  D  sG + d++vi +d
  MMETSP1061-20121228|4155_1  47 GTTIVGVVYKDGVVLGADTRATGGTEVAEKNCVKIHYMAPNMYCCGAGTAADCDMVTELISSQLELLRMNTHSQSRVITACTLLKRRLFQYQG-HIGAAMILGGCDVNGPSIYQIHPHGSTAKLNYTTMGSGSLAAMAIFESSWKEDMDEAEAVELVQRGILAGIFNDLGSGSNCDICVIRTD 228
                 8*****************************************************************************************998.67899*********************************************************************************977 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   9.6e-22   9.8e-19      27     215 ..      45     230 ..      41     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 9.6e-22
   TIGR03633  27 krgttavGiktkegvvlivdkrits.klleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddkearlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakal.eeelkaeevevavveveek 215
                 k gtt vG+ +k+gvvl +d r+t    + +++  ki+ +   + ++ aG +aD  ++ +   ++    r+  +++ +v +   + + lk+   q+ G    G a++++G d +++ +++  P G + + + +++G+g+ ++++++e+++ked++  ea+el  + + + + ++  + ++ +++v+ ++++
  MMETSP1061-20121228|4155_1  45 KTGTTIVGVVYKDGVVLGADTRATGgTEVAEKNCVKIHYMAPNMYCCGAGTAADCDMVTELISSQLELLRMNTHSQSRVIT---ACTLLKRRLFQYQGH--IGAAMILGGCDVNGPSIYQIHPHGSTAKLNYTTMGSGSLAAMAIFESSWKEDMDEAEAVELVQRGILAGIfNDLGSGSNCDICVIRTDQS 230
                 789*******************9862568889999***********************99987776666666666555543...456677777788774..79***********************************************************998766554267778999*****998764 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.9   1.3e-14   1.3e-11       4     168 ..      46     203 ..      43     220 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 1.3e-14
   TIGR03690   4 hgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvav 168
                  gttiv ++yk+Gv+l  d rat G+ +a+++  k++          aGta+ +  ++ l   +le        +   ++++   +++++  l +    + +  +l G d++     i+      g++ + +y+++GsGs+ a + +   +ked++e++av+++ 
  MMETSP1061-20121228|4155_1  46 TGTTIVGVVYKDGVVLGADTRATGGTEVAEKNCVKIHYMAPNMYCCGAGTAADCDMVTELISSQLELLRM----NTHSQSRVITACTLLKRRLFQYQGHIGAAMILGGCDVNGP--SIYQIHPH-GSTAKLNYTTMGSGSLAAMAIFESSWKEDMDEAEAVELVQ 203
                 69*********************************98766555555689988766667788777775543....2233566677788899999775444556677888888654..45555544.57789******************************99865 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.5e-07   0.00015       1      70 [.      48     116 ..      48     147 .. 0.91
   2 ?   -3.2   0.0       1.3   1.3e+03     121     137 ..     173     189 ..     166     206 .. 0.60

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.5e-07
   TIGR03692   1 ttilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeekleeykgn 70 
                 tti+ v  ++ vv+++d ++t g+ v  +n  k++ ++ +   +G aG++ad   ++e + ++le  + n
  MMETSP1061-20121228|4155_1  48 TTIVGVVYKDGVVLGADTRATGGTEVAEKNCVKIHYMAPNMYCCG-AGTAADCDMVTELISSQLELLRMN 116
                 9************************************99988888.9*************9999876554 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 1.3
   TIGR03692 121 aiGsGgnyalaaarall 137
                 ++GsG+  a+a  ++  
  MMETSP1061-20121228|4155_1 173 TMGSGSLAAMAIFESSW 189
                 67888777776655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1351.75
//
Query:       MMETSP1061-20121228|4164_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 736.09
//
Query:       MMETSP1061-20121228|4160_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 1515.99
//
Query:       MMETSP1061-20121228|4171_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.56
# Mc/sec: 724.78
//
Query:       MMETSP1061-20121228|4176_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.42    6.2   4.4       0.37    6.4   3.0    1.1  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   3.0   9.1e-05      0.37      57     106 ..      20      69 ..       2     120 .. 0.75

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 9.1e-05
   TIGR01299  57 dyyapaetysrgeaaddeeegeasseateghdeedeiyegeyqgipraes 106
                  y+  +ety   + +dd+++  a+   t+  d +de y+g    +   ++
  MMETSP1061-20121228|4176_1  20 RYKGNGETYNNSKNNDDDDDCLATMFPTKVRDGDDEEYQGLLSEVDEDTD 69 
                 46778999999999999999999999999999999998887776664444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.37
# Mc/sec: 431.64
//
Query:       MMETSP1061-20121228|4173_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 2507.79
//
Query:       MMETSP1061-20121228|4174_1  [L=784]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-66  220.7   0.0      2e-44  150.0   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.1e-36  124.2   5.4    3.6e-17   60.3   0.3    4.1  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.6e-36  124.1   1.7    2.1e-11   41.3   0.0    4.0  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.6e-35  119.2   0.0    1.8e-21   73.9   0.0    3.5  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    4.1e-35  118.8   0.7      2e-19   67.6   0.1    4.3  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    6.4e-33  112.0   3.7    8.3e-10   35.7   0.0    4.2  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.6e-31  107.5   0.0    2.5e-09   34.9   0.0    4.2  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.4e-30  104.2   0.0    2.3e-15   54.5   0.0    4.1  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.7e-30  104.0   0.0    2.2e-11   41.5   0.0    4.2  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    2.7e-30  103.6   0.1    1.6e-10   38.7   0.0    4.1  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.2e-30  103.3   0.0    3.4e-10   37.5   0.0    4.2  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    3.8e-30  102.7   0.0    8.3e-12   42.2   0.0    4.1  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    2.6e-29  100.1   2.9    7.2e-15   52.9   0.0    3.7  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    8.6e-29   98.7   0.0    1.1e-08   32.9   0.0    4.3  4  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.3e-28   97.0   5.8    4.4e-18   63.5   0.0    4.4  4  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    5.4e-28   96.0   0.9    3.6e-14   50.8   0.0    3.5  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    7.5e-28   95.2   0.0    4.1e-09   34.0   0.0    4.3  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.2e-27   93.6   0.0    3.9e-10   36.7   0.0    4.0  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.8e-27   92.8   0.6    1.6e-10   38.8   0.0    4.2  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    5.7e-27   92.8   0.0    2.3e-09   35.1   0.0    3.5  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    6.8e-26   89.2   0.0    4.7e-07   27.5   0.0    4.1  4  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      2e-25   87.6   0.0    3.3e-09   34.3   0.0    4.2  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.7e-25   87.2   0.2    1.2e-12   45.6   0.0    4.0  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.9e-25   87.0   0.1    1.7e-09   35.4   0.0    4.2  4  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    5.1e-24   82.9   0.0    5.2e-07   27.2   0.0    4.1  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.9e-23   81.0   0.1    6.8e-10   36.5   0.0    4.2  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      2e-23   80.4   0.1    4.1e-09   33.1   0.0    3.8  4  TIGR00958 3a01208: antigen peptide transporter 2
    2.7e-23   80.4   0.0    6.7e-09   33.1   0.0    4.2  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.6e-23   80.3   0.0    1.3e-08   32.5   0.0    4.1  4  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    6.4e-23   79.3   0.2    2.1e-07   28.6   0.0    4.1  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.1e-22   78.5   0.1    2.3e-09   34.9   0.0    4.0  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.8e-22   77.5   0.2    2.3e-07   27.6   0.0    4.0  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    2.3e-22   77.1   0.1    1.3e-07   28.3   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.8e-22   76.5   0.1    8.1e-08   28.7   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.7e-22   76.7   0.0    2.4e-10   38.1   0.0    3.9  3  TIGR01978 sufC: FeS assembly ATPase SufC
    4.9e-22   76.3   0.1    1.8e-10   38.3   0.0    4.0  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    8.4e-22   75.5   0.0    3.9e-09   34.0   0.0    4.0  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.3e-21   74.0   0.4    5.9e-08   29.9   0.0    4.5  5  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    7.3e-20   69.0   3.1    6.2e-09   33.1   0.1    4.0  3  TIGR01288 nodI: nodulation ABC transporter NodI
    1.9e-19   67.7   0.3    5.9e-07   26.8   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.1e-19   67.1   0.0    1.3e-08   31.4   0.0    4.0  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
      3e-19   66.7   1.0    4.9e-06   23.1   0.0    4.2  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.4e-18   65.1   0.1      1e-05   23.1   0.0    4.3  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.2e-17   60.9   0.2    3.1e-06   24.3   0.0    4.1  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      3e-17   60.2   0.2    3.4e-07   27.1   0.0    3.6  3  TIGR00955 3a01204: pigment precursor permease
    8.1e-17   58.8   0.0    1.6e-05   21.5   0.0    3.7  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    7.6e-16   55.4   0.0    6.1e-07   26.1   0.0    3.3  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    6.5e-15   52.8   0.1    3.6e-07   27.3   0.1    4.1  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.2e-14   52.2   0.5      1e-05   23.0   0.0    4.0  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    5.7e-13   45.0   0.0     0.0004   15.8   0.0    3.5  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    6.5e-13   45.8   0.0    1.2e-07   28.4   0.0    3.6  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    8.5e-12   42.3   0.1    0.00017   18.1   0.0    3.1  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    7.2e-11   37.5   0.1    5.3e-05   18.0   0.0    2.6  2  TIGR01257 rim_protein: rim ABC transporter
    6.7e-10   36.0   0.0      1e-08   32.0   0.0    2.7  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    3.8e-07   25.7   0.0      0.002   13.4   0.0    3.2  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    8.5e-06   21.4   3.5     0.0061   12.0   0.0    4.1  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
    0.00015   19.5   1.3      0.049   11.2   0.0    2.7  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0003   16.9   0.0      0.014   11.4   0.0    2.2  2  TIGR00630 uvra: excinuclease ABC subunit A
     0.0031   14.8   0.1       0.02   12.2   0.0    2.1  2  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
     0.0097   12.6   0.1      0.026   11.2   0.0    1.7  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
  ------ inclusion threshold ------
      0.012   12.6   0.1        1.1    6.1   0.0    2.6  2  TIGR00611 recf: DNA replication and repair protein RecF
      0.012   12.4   0.0       0.04   10.8   0.0    1.8  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
      0.016   13.3   0.2        4.1    5.5   0.1    3.0  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
      0.022   10.2   0.0      0.022   10.2   0.0    2.5  4  TIGR00606 rad50: rad50
        3.9    5.2  11.3        3.8    5.2   0.0    4.0  4  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.0   0.0   3.1e-46     2e-44      20     395 ..     226     622 ..     219     634 .. 0.79
   2 !   68.5   0.0   1.5e-21   9.4e-20     156     228 ..     679     753 ..     666     775 .. 0.91

  Alignments for each domain:
  == domain 1    score: 150.0 bits;  conditional E-value: 3.1e-46
   TIGR03719  20 ilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegv...aeikealdrfeeisaklaeedadfdklleeqaklqekidaadawdldskleiamdalrlpee..dakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflke...yk.GtvvavthdryfldnvaeWileldrG..egipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspk.....arqakskarlaryeelaseesekkee....tae....ivippgerlGdkvievenlskafgd...klliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqsrd 395
                 +l+d    f  g + G++G nG Gkstll+ ma       G++    +++v y++qe +l +e+  +  ve  v    e + + ++++e+++  +e + d  +  ++++++  ++d+ +a +  ++ +  +d l   ee    ++++lsGG + r  l+  ++ kPdlllldePtnhl   +v Wl + l+    +k   vv+v hdr+f+d+v+   l +     + +  kgnys w +++++     +ke+a+r+ ++++  e+  +  k     ++  k   + ++ ++l+++++e+ +e    +++    + i++g  +   v++++++  ++       l+ + +f +   + + ++G nG Gk+tl+kli+g+ +p +G++      ++a v+q++ 
  MMETSP1061-20121228|4174_1 226 LLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMAA---RRVGDVP--ANVTVHYVSQEVSLTPEQRNKTPVECVVdadIERNLLTKELKELEHLASEGELDA-EGSKRHGDVLTRLDEIEADSASRRAKELLDNLGFSEElqARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTsetWKeRIVVLVSHDRHFMDEVCTDCLHVSGAarKLTQCKGNYSLWAKRRKDEQVLFAKEQAKRQEEIDRLREYAGHGFKyggssSQINKMSMKAKQADKLEQAHEEHATElaalQEDielpLKISAGGEIDGFVVQLKSVGFGYPGatpARLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHARFALVNQHHA 622
                 7899999*************************96...5567764..5799**********98776665555444100455666788999988777776664.4578899999**********************999852256899*******************************************98622244146899*****************98542256789************9999***************9999876554221112333444444555566555444443311112231122568899999999********99976222469******************************************************9874 PP

  == domain 2    score: 68.5 bits;  conditional E-value: 1.5e-21
   TIGR03719 156 dakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvae..Wi 228
                 ++  + lsGG++ rval+ + + +P +l+ldePtn ld esva l   +k+++G+v++v hd++f++ va+  W+
  MMETSP1061-20121228|4174_1 679 NTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEGAVICVSHDQFFVQSVANeaWV 753
                 567789***************************************************************973355 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.3   5.6e-19   3.6e-17      12     208 ..     222     438 ..     216     448 .. 0.68
   2 !   57.8   0.3   3.3e-18   2.1e-16      31     215 ..     579     759 ..     571     764 .. 0.75

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 5.6e-19
   TIGR03873  12 ggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGll...apdaGevdlagadlk.alsrrararrvalveqdsdaevplsvrdvval............GriPhrslfaa....dsdedaevvdralarvels.sladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvv 208
                 gg ++++d  + +  G   gl+G nG Gkstllr +a       p++ +v++ ++++  + ++r+++    +v+ d +   +l  ++   l            G   h  +++     ++d+ +  ++++l + + s +l  r+ls lsGG r r+ la a+  +P lllldePtnhl + a + l + +++    ++  vv+  hd  +  +vc + +
  MMETSP1061-20121228|4174_1 222 GGMPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMAARRvgdVPANVTVHYVSQEVSlTPEQRNKTPVECVVDADIE--RNLLTKELKELehlasegeldaeGSKRHGDVLTRldeiEADSASRRAKELLDNLGFSeELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSEtWKERIVVLVSHDRHFMDEVCTDCL 438
                 788999*****************************9976522247788899999998624455666655566665554..4444444444400011111111144444444332111122223334567788887642799***************************************988887777766543344556667799999988887765 PP

  == domain 2    score: 57.8 bits;  conditional E-value: 3.3e-18
   TIGR03873  31 gllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalve...qdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrv 215
                  llG nG Gk+tl++l+ G l+p++G+v  + +   al  ++ a ++ l     q  +++ p       +     h+s  +  s    +  ++  +   + +l +   s+lsGG+r rv la     +P++l+ldePtn ld+++  +l   v++    + +v+   hd  +  sv+++  v++gG v
  MMETSP1061-20121228|4174_1 579 VLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHARFALVNQHHADQIDLTMtplQFLRTKFPGDGSYEHMQTLRGHLSSCGVTS----GSSNNNASGKRVFDLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNF---EGAVICVSHDQFFVQSVANEAWVVSGGVV 759
                 589************************987766666666666665555432122344444444333222222233444444443....33344455567788999999**************99999****************9999999999999...67888999************999999976 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00012    0.0078     320     369 ..     197     258 ..     162     285 .. 0.75
   2 !   34.7   0.1   3.4e-11   2.2e-09     440     522 ..     349     432 ..     329     437 .. 0.81
   3 !   31.5   0.0   3.2e-10     2e-08     320     382 ..     531     609 ..     497     634 .. 0.75
   4 !   41.3   0.0   3.3e-13   2.1e-11     456     521 ..     682     745 ..     649     754 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00012
   TIGR02857 320 s...........slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklll 369
                             +l ++  ++  +g   p l++   ++  g++++l+G  G+GKstll++++
  MMETSP1061-20121228|4174_1 197 VrertrlgayrgALDATSFTLPNPGGGmPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMA 258
                 1344444556668888888999988888******************************9876 PP

  == domain 2    score: 34.7 bits;  conditional E-value: 3.4e-11
   TIGR02857 440 lvkalpqgleteiGerg.agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalael 522
                 l+++l  g+  e+  r+ ++LSgG r R  LA a+  + +llllDEPt hL   +   + ++l      ++r+v+lv+H+++ + +
  MMETSP1061-20121228|4174_1 349 LLDNL--GFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSEtwKERIVVLVSHDRHFMDE 432
                 55555..4555555544379*************************************9999997654449***********99876 PP

  == domain 3    score: 31.5 bits;  conditional E-value: 3.2e-10
   TIGR02857 320 s..............slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvn 382
                                 ++l+ v + y+g++     ++ ++ + ++++++l+G+ G GK+tl+kl+ g +epteG +l n
  MMETSP1061-20121228|4174_1 531 ElplkisaggeidgfVVQLKSVGFGYPGATpaRLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRN 609
                 133334445555566999***********9644589**************************************99755 PP

  == domain 4    score: 41.3 bits;  conditional E-value: 3.3e-13
   TIGR02857 456 gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                 ++ LSgGqr R+aLA +     ++l+lDEPt +LD e+ a++ + ++++    +v+ v+H++  ++
  MMETSP1061-20121228|4174_1 682 ASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFE--GAVICVSHDQFFVQ 745
                 578********************************************964..46899999987665 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.8e-05    0.0011     461     514 ..     205     258 ..     182     265 .. 0.86
   2 !   25.5   0.0   1.3e-08   7.9e-07     602     666 ..     365     431 ..     350     435 .. 0.86
   3 !   73.9   0.0   2.9e-23   1.8e-21     460     665 ..     540     744 ..     495     761 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.8e-05
   TIGR03375 461 klkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklll 514
                   +G+++  + ++  p+   + L++  ++   G + ++iGr+G GKstll+ ++
  MMETSP1061-20121228|4174_1 205 AYRGALDATSFTLPNPGGGMPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMA 258
                 5567777777777778899999****************************9886 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.3e-08
   TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLe 666
                 ++LSgG r    la a+  +p++llLDEPt++l   + + l ++L++  +  ++ +vlv+H  ++++
  MMETSP1061-20121228|4174_1 365 SELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETwkERIVVLVSHDRHFMD 431
                 57*******************************************865544499*******998886 PP

  == domain 3    score: 73.9 bits;  conditional E-value: 2.9e-23
   TIGR03375 460 eklkGe.ielknvsfkYpeeekaaL.knvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslL 665
                  ++ G  ++lk+v f Yp+++ a L ++ ++ i + +++ ++G++G GK+tl kl++g +epteG vl + +    +  ++  ++i + +   + +  +      +++ ++   +l     ++G ++  ++ ++ +dlq     ++LSgGQr  vala +    p++l+LDEPt++lD +s + l + +k++     ++ v+H + ++
  MMETSP1061-20121228|4174_1 540 GEIDGFvVQLKSVGFGYPGATPARLfRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHARFALVNQHHADQIDLTMTPLQFLRTKFPGDGSYEHMQTLRGHLSSCGVTSGSSNNNASGKRVFDLQN-TPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFE--GAVICVSHDQFFV 744
                 556664269***********998875789**************************************************************9999998888888888877777777777777777777777777788885.55679***********************************999999988874..4567777766555 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   0.00012    0.0079       8      39 ..     227     258 ..     222     281 .. 0.86
   2 !   31.8   0.0     3e-10   1.9e-08     101     186 ..     339     426 ..     331     430 .. 0.85
   3 !   67.6   0.1   3.2e-21     2e-19       8     186 ..     565     740 ..     559     743 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 0.00012
   TIGR01166   8 lkglnlavergevlallGanGaGkstlllhln 39 
                 l++   ++  g++ +l+G+nG Gkstll+ ++
  MMETSP1061-20121228|4174_1 227 LEDAACRFVWGRRYGLIGRNGVGKSTLLRAMA 258
                 5566667778999***************9886 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 3e-10
   TIGR01166 101 eaeverrvrealaavdis.gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklre.eGktvvisthd 186
                  + ++rr +e l+ ++ s +l+ r  + lsgG + r+ +a+a+  +pd+llldePt  l    +  l++ l+  +  + + vv+ +hd
  MMETSP1061-20121228|4174_1 339 ADSASRRAKELLDNLGFSeELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETwKERIVVLVSHD 426
                 56788999********86369**************************************99999999988877655145556778888 PP

  == domain 3    score: 67.6 bits;  conditional E-value: 3.2e-21
   TIGR01166   8 lkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnl...Glseaeverrvr.ealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                 ++  ++ ++  ++++llG+nG Gk+tl++ + G+l P++G vl++     + r  l+++ +  ++ l  +  q++ ++   d ++  +      ls   v++  + +  +   + +l++ p++ lsgG++ rva+a++   rp+vl+ldePt +ld + +  l++ +++++  G  v+  +hd
  MMETSP1061-20121228|4174_1 565 FRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNP----HARFALVNQHHADQIDLTMTPLQFLRTKFPGDGSYEHMQTlrgHLSSCGVTSGSSnNNASGKRVFDLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFE--GA-VICVSHD 740
                 567788999999*******************************985....7899*******************************9876423236677777655414445567899*************************************************999875..43.4555566 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0    0.0002     0.013     349     383 ..     224     259 ..     170     287 .. 0.76
   2 !   34.1   0.2     4e-11   2.6e-09     460     529 ..     354     426 ..     333     427 .. 0.85
   3 !   28.2   0.0   2.4e-09   1.5e-07     330     395 ..     536     609 ..     494     626 .. 0.77
   4 !   35.7   0.0   1.3e-11   8.3e-10     469     528 ..     682     739 ..     677     741 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.0002
   TIGR02868 349 e.vlkgvsldlepGervavvGasGaGKstLlallag 383
                    l++       G+r  ++G+ G+GKstLl ++a 
  MMETSP1061-20121228|4174_1 224 MpLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMAA 259
                 4467777788889******************99874 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 4e-11
   TIGR02868 460 Gldtklgegg.arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthr 529
                 G + +l+++  + lSGG r R +lA a+ a+ ++llLDEPt hL   +   l ++L   ++ ++r vvlv+h+
  MMETSP1061-20121228|4174_1 354 GFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELStsETWKERIVVLVSHD 426
                 5555565554257*******************************************9666778888******7 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 2.4e-09
   TIGR02868 330 s......ekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtld 395
                        + + ++l+ + ++ypga +   +++ ++ ++  +r+ ++G  G GK+tL++l++g l+p +G+v+ +
  MMETSP1061-20121228|4174_1 536 IsaggeiDGFVVQLKSVGFGYPGATParLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRN 609
                 0334445788999**********9987789****************************************9865 PP

  == domain 4    score: 35.7 bits;  conditional E-value: 1.3e-11
   TIGR02868 469 garlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvth 528
                 +++lSGG+r R+alA +  a   vl+LDEPt +LD e  ++l + + +  eg +v+ v+h
  MMETSP1061-20121228|4174_1 682 ASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCV-KNFEG-AVICVSH 739
                 789*********************************9988875543.33333.4566666 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.022       1.4      15      51 ..     224     260 ..     218     286 .. 0.79
   2 !   34.9   0.0     4e-11   2.5e-09     107     209 ..     335     439 ..     330     443 .. 0.81
   3 !   25.9   0.0   2.3e-08   1.4e-06       1      61 [.     546     608 ..     546     625 .. 0.86
   4 !   34.6   0.0     5e-11   3.1e-09     131     206 ..     678     750 ..     673     757 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.022
   TIGR02673  15 veaLkdvslkiekgeflfltGasGaGkttllklllga 51 
                 +  L+d   ++  g  + l+G+ G Gk+tll+ + ++
  MMETSP1061-20121228|4174_1 224 MPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMAAR 260
                 566777777888888889*************988765 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 4e-11
   TIGR02673 107 rgkkeeeiqkrveevlelvgledkakalp.eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnk.rGttvivathdeelvervkkrvle 209
                 +  ++++ ++r +e+l+ +g+++  +a + +elsgG + R+ +a ai  kP+lll DePt  l       + + l++ ++ +   v++++hd++++++v +  l+
  MMETSP1061-20121228|4174_1 335 DEIEADSASRRAKELLDNLGFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETwKERIVVLVSHDRHFMDEVCTDCLH 439
                 567788999*************9998765379****************************99987655555554444433155689999*******999777666 PP

  == domain 3    score: 25.9 bits;  conditional E-value: 2.3e-08
   TIGR02673   1 iielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevev 61 
                 +++l+ v + y+  + ++  +++++ i+  + + l G+ G Gkttl+kl++g ++p++G+v  
  MMETSP1061-20121228|4174_1 546 VVQLKSVGFGYPgaTPARLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLR 608
                 6899999999*9333456689**************************************9965 PP

  == domain 4    score: 34.6 bits;  conditional E-value: 5e-11
   TIGR02673 131 akalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkr 206
                 +++ +++lsgG + Rva+a     +P++l+ DePt nlD e  + + d +k+++    +vi ++hd+ +v++v++ 
  MMETSP1061-20121228|4174_1 678 QNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFE---GAVICVSHDQFFVQSVANE 750
                 5677899********************************999888888887765...4689999**9999988665 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.2e-05     0.002      25      49 ..     236     260 ..     222     294 .. 0.73
   2 !   27.3   0.0   7.6e-09   4.8e-07     107     201 ..     342     436 ..     329     453 .. 0.87
   3 !   54.5   0.0   3.7e-17   2.3e-15      15     220 ..     564     769 ..     548     776 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.2e-05
   TIGR03410  25 kgevvavlGrngvGkttllkalvgl 49 
                  g+   ++GrngvGk+tll+a+ + 
  MMETSP1061-20121228|4174_1 236 WGRRYGLIGRNGVGKSTLLRAMAAR 260
                 5667789**************9764 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 7.6e-09
   TIGR03410 107 ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladr 201
                 +++  +e+++     +e+++R   +LsGG +    +a a+ ++P lllLDePt+ +    +  +++ +++ ++ k+  ++lv +  +f  e+   
  MMETSP1061-20121228|4174_1 342 ASRRAKELLDNLGFSEELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDRHFMDEVCTD 436
                 5556678888888999****************************************999999999999999999999999999999999988765 PP

  == domain 3    score: 54.5 bits;  conditional E-value: 3.7e-17
   TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeieleged...itklkpeervkaGiayvpqGreifpkltveenlelglealkkk.ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeld 220
                 ++r+ ++ +++++ +++lG ng Gkttl+k ++g l+ ++G +  + +    + +++  ++++  ++     r+ fp     e +++   +l++   ++   +  +    + ++++  +  LsGGq+  +a+a +  ++P++l+LDePt+ +    ++ +++ +k+ +     a++ v +   f++++a++ +v++ G v + ++ e+ +
  MMETSP1061-20121228|4174_1 564 LFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHArfaLVNQHHADQIDLTMTPLQFLRTKFPGDGSYEHMQTLRGHLSSCgVTSGSSNNNASGKRVFDLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEG----AVICVSHDQFFVQSVANEAWVVSGGVVKQVESFESYR 769
                 5667788888999999**************************987765421155666666777777777788***********9999877776653344445555566678899***************************************9999999998887765....7999999999*************99998877766655 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.026       1.7      31      67 ..     237     276 ..     224     288 .. 0.72
   2 !   41.5   0.0   3.4e-13   2.2e-11     112     207 ..     336     432 ..     330     442 .. 0.86
   3 !   16.1   0.0   2.1e-05    0.0014      18      67 ..     562     611 ..     548     634 .. 0.85
   4 !   34.8   0.0   3.9e-11   2.5e-09     136     210 ..     679     749 ..     668     760 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.026
   TIGR02211  31 gelvaivGssGsGkstllhllggl...dkptsGevllkGk 67 
                 g   +++G  G Gkstll  +++    d p++ +v    +
  MMETSP1061-20121228|4174_1 237 GRRYGLIGRNGVGKSTLLRAMAARrvgDVPANVTVHYVSQ 276
                 566789************9998742235666666655555 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 3.4e-13
   TIGR02211 112 kkskkeakerakellekvglekrinkkp.selsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakk 207
                 + +  +a +rakell+++g+++ ++ ++ selsGG r r  +a a+  kP+l+l dePt +l   +   + + l   ++ k+  +++v+hd++++++
  MMETSP1061-20121228|4174_1 336 EIEADSASRRAKELLDNLGFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDRHFMDE 432
                 566788999**************998765*********************************8877766666666667777888999****999875 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 2.1e-05
   TIGR02211  18 ievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGk 67 
                  +++++ ++ i++   + ++G+ G Gk+tl+ l+ g  +pt+G+vl + +
  MMETSP1061-20121228|4174_1 562 ARLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPH 611
                 5678889999**9********************999999******87655 PP

  == domain 4    score: 34.8 bits;  conditional E-value: 3.9e-11
   TIGR02211 136 nkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldr 210
                 n  +s+lsGG+r rva+a     +P++++ dePt nld ++  ++ + ++    + + a++ v+hd+ +++ + +
  MMETSP1061-20121228|4174_1 679 NTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVK----NFEGAVICVSHDQFFVQSVAN 749
                 55689**********************************99988777765....556799******999987765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0     0.002      0.13      27      76 ..     227     279 ..     220     293 .. 0.75
   2 !   38.7   0.0   2.5e-12   1.6e-10     114     224 ..     330     440 ..     322     460 .. 0.92
   3 !   18.1   0.0     5e-06   0.00031      31      69 ..     569     607 ..     558     621 .. 0.88
   4 !   31.5   0.0     4e-10   2.5e-08     145     233 ..     678     762 ..     670     778 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.002
   TIGR02769  27 ldnvslsleeGetvallGrsGaGkstlarlllGl...ekPakGevsfrGqdla 76 
                 l++       G   +l+Gr G Gkstl r +      + Pa+ +v++  q+++
  MMETSP1061-20121228|4174_1 227 LEDAACRFVWGRRYGLIGRNGVGKSTLLRAMAARrvgDVPANVTVHYVSQEVS 279
                 66666677779999*************99986542225788888888888875 PP

  == domain 2    score: 38.7 bits;  conditional E-value: 2.5e-12
   TIGR02769 114 PlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvl 224
                  l +l ++++    +r++ell+ +++++e   +  ++lsGG   r  +a a+ ++P l++lde    l ++  + + + l   +      +++++hd + +++++  +l +
  MMETSP1061-20121228|4174_1 330 VLTRLDEIEADSASRRAKELLDNLGFSEELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDRHFMDEVCTDCLHV 440
                 56778888888999********************************************************99999999999999999999***************999755 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 5e-06
   TIGR02769  31 slsleeGetvallGrsGaGkstlarlllGlekPakGevs 69 
                 ++ + +   + llG+ G Gk+tl +l++G  +P++G+v 
  MMETSP1061-20121228|4174_1 569 EFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 55677778899*************************995 PP

  == domain 4    score: 31.5 bits;  conditional E-value: 4e-10
   TIGR02769 145 dklPr.qlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveei 233
                 +  P+  lsGGq  r+++a    ++P+++vlde   nldl   a     l +  ++f  a++ ++hd   vq++a++  v+ +G  v ++
  MMETSP1061-20121228|4174_1 678 QNTPAsALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVA----ALADCVKNFEGAVICVSHDQFFVQSVANEAWVVSGGV-VKQV 762
                 55664269***********9999****************97654....4555556677799*******************99884.4443 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.043       2.7      20      39 ..     238     257 ..     227     262 .. 0.86
   2 !   37.5   0.0   5.4e-12   3.4e-10      89     192 ..     330     435 ..     319     527 .. 0.85
   3 !   19.2   0.0   2.1e-06   0.00013      10      50 ..     566     606 ..     561     641 .. 0.82
   4 !   35.9   0.0   1.7e-11   1.1e-09     117     209 ..     677     766 ..     668     779 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.043
   TIGR01188  20 evfglLGPnGAGKtttikmL 39 
                   +gl+G nG GK+t+++ +
  MMETSP1061-20121228|4174_1 238 RRYGLIGRNGVGKSTLLRAM 257
                 569*************9876 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 5.4e-12
   TIGR01188  89 llgelyglpkkeaeeraeellelvelkea.adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadklad 192
                 +l++l +++ + a +ra+ell+ + + e  + + + ++sgG r r  laa++ a+P++l LDEPt  L   +   + + ++  ++  +  ++l +h+ +  d+++ 
  MMETSP1061-20121228|4174_1 330 VLTRLDEIEADSASRRAKELLDNLGFSEElQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWkERIVVLVSHDRHFMDEVCT 435
                 5678889999***************987527799**********************************99988888777776665547778888888666666664 PP

  == domain 3    score: 19.2 bits;  conditional E-value: 2.1e-06
   TIGR01188  10 dgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGta 50 
                 ++ ++ ++  + + lLG nG GKtt++k++ + l+P++G +
  MMETSP1061-20121228|4174_1 566 RHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDV 606
                 56788888889999*************************54 PP

  == domain 4    score: 35.9 bits;  conditional E-value: 1.7e-11
   TIGR01188 117 aadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpe 209
                  ++ ++  +sgG+r r+ laa   a+P+vl LDEPt  LD ++ +a+ d +++++    +++  +h+   ++++a++  +++ G++   ++ e
  MMETSP1061-20121228|4174_1 677 LQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEG---AVICVSHDQFFVQSVANEAWVVSGGVVKQVESFE 766
                 567788999******************************************99865...6888899999999999999999999988877766 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00017     0.011     303     365 ..     196     258 ..     177     265 .. 0.89
   2 !   24.6   0.0   2.9e-08   1.8e-06     453     517 ..     365     430 ..     332     442 .. 0.83
   3 !   18.1   0.0   2.6e-06   0.00016     318     375 ..     548     606 ..     534     620 .. 0.86
   4 !   42.2   0.0   1.3e-13   8.3e-12     453     533 ..     683     761 ..     678     767 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00017
   TIGR01842 303 areealklPepegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllv 365
                 + +e+ +l + +g l++ + +l +p++  + l++   +   G   ++iG  g Gks+L r + 
  MMETSP1061-20121228|4174_1 196 SVRERTRLGAYRGALDATSFTLPNPGGGMPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMA 258
                 55678899999*************************************************985 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 2.9e-08
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelka.rkitvvvithrpsll 517
                 ++LsgG r R  La a++ +P l++LDeP   L     + la+ l +    ++++vv+++h  + +
  MMETSP1061-20121228|4174_1 365 SELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETwKERIVVLVSHDRHFM 430
                 78*********************************9999999999876642778999999977665 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 2.6e-06
   TIGR01842 318 evenvslvppeek.kktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsv 375
                 ++++v +  p++  ++ +++ +f +++ + ++++G  g Gk++L++l++G+ +p++G v
  MMETSP1061-20121228|4174_1 548 QLKSVGFGYPGATpARLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDV 606
                 566666666665514667999************************************98 PP

  == domain 4    score: 42.2 bits;  conditional E-value: 1.3e-13
   TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllel.vdkilvlkdGalka 533
                 +aLsgGqr R+aLa   +  P+++vLDeP  nLD e  +ala+ +k+    + +v+ ++h    +++ +++  v++ G +k+
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNF---EGAVICVSHDQFFVQSvANEAWVVSGGVVKQ 761
                 78****************************************987655...6789999998776665156777887777765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0     0.011       0.7      25      48 ..     235     258 ..     222     282 .. 0.76
   2 !   37.2   0.4   7.1e-12   4.5e-10     101     198 ..     334     435 ..     322     449 .. 0.88
   3 !   52.9   0.0   1.1e-16   7.2e-15      17     202 ..     565     753 ..     548     764 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.011
   TIGR03864  25 akgefvaLLGpnGaGkstLfsllt 48 
                   g+   L+G nG GkstL+  ++
  MMETSP1061-20121228|4174_1 235 VWGRRYGLIGRNGVGKSTLLRAMA 258
                 56777789***********97553 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 7.1e-12
   TIGR03864 101 LhGlsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevre.lvreeglsvLWa..thlvdevea 198
                 L  +   +a++r +e+l++lg++e  +++ + eL+GG r r  +a a+  +P+lLLlDe+t  L i + + l +e+ +  + +e++ vL +   h++dev +
  MMETSP1061-20121228|4174_1 334 LDEIEADSASRRAKELLDNLGFSEELQARsLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTsETWKERIVVLVShdRHFMDEVCT 435
                 667888999**************999887699****************************************99987615668888888653379***9965 PP

  == domain 3    score: 52.9 bits;  conditional E-value: 1.1e-16
   TIGR03864  17 lddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegei......kvaGldlrrapkealarlGvvfqqstl..DldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrl 202
                 +++ ++ +++ + ++LLG nG Gk+tL++l+ + +e +eg++      + a ++ ++a +  l+   + f ++ +  D     +q lr h +  G+++ +++++ + +     + + +++ + +L+GG+r rv +a     +P++L+lDe+t  LD+es aal + v++    + ++v     +v+ v++e  +
  MMETSP1061-20121228|4174_1 565 FRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVlrnphaRFALVNQHHADQIDLTMTPLQFLRTKFpgDGSYEHMQTLRGHLSSCGVTSGSSNNNASGK----RVFDLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFE-GAVICVSHDQFFVQSVANEAWV 753
                 56778889999999************************9998332222233333444444446666667777766225556667999999999999999888776543....45566678899********************************************9976.7888988888888888776554 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.019       1.2      13      53 ..     221     261 ..     213     288 .. 0.77
   2 !   32.9   0.0   1.8e-10   1.1e-08     111     212 ..     338     441 ..     331     444 .. 0.80
   3 !   22.5   0.0   2.8e-07   1.8e-05       2      65 ..     547     611 ..     546     626 .. 0.86
   4 !   31.0   0.0     7e-10   4.4e-08     137     212 ..     683     755 ..     674     759 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.019
   TIGR00960  13 gaaelaldnvtvkiekGelvflvGhsGaGkstllklilgie 53 
                 g+  + l++ + +   G    l+G  G Gkstll+ + ++ 
  MMETSP1061-20121228|4174_1 221 GGGMPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMAARR 261
                 555667777777888888888*************9887764 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1.8e-10
   TIGR00960 111 kgreieervsaalekvGlkdkak.alPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGt....tvlvathdenlveskrkrvltls 212
                 +++ +++r+++ l+++G+++  + +   +lsgG + r  +a a+  kP lll dePt  l       ++ l +e+    t     v++ +hd++++++    +l++s
  MMETSP1061-20121228|4174_1 338 EADSASRRAKELLDNLGFSEELQaRSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSIL---AVMWLARELSTSETwkerIVVLVSHDRHFMDEVCTDCLHVS 441
                 678899************98765156689*****************************99765...45555555544333222278999*********999999875 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 2.8e-07
   TIGR00960   2 ikfeqvskaykgaaelal.dnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgq 65 
                 ++++ v   y+ga+   l  + ++ i+  + + l G+ G Gk+tl+kli+g  +p++G+++ + +
  MMETSP1061-20121228|4174_1 547 VQLKSVGFGYPGATPARLfRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPH 611
                 7889999999999875543899**************************************98766 PP

  == domain 4    score: 31.0 bits;  conditional E-value: 7e-10
   TIGR00960 137 vqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltls 212
                   lsgG++ rva+a     +P++l+ dePt nld e    + + +++++    +v+  +hd+ +v+s  +   ++s
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEG---AVICVSHDQFFVQSVANEAWVVS 755
                 579********************************998888888888764...688999***99999887766655 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.8e-05    0.0049      13      48 ..     224     259 ..     216     287 .. 0.85
   2 !   17.8   0.1   6.9e-06   0.00044     103     187 ..     341     427 ..     317     438 .. 0.83
   3 ?   -2.3   0.1       9.8   6.2e+02      56     122 ..     465     531 ..     459     540 .. 0.56
   4 !   63.5   0.0   6.9e-20   4.4e-18      14     188 ..     563     742 ..     560     750 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.8e-05
   TIGR01189  13 rvlleglsfelaaGealvveGpnGiGKttLLRilaG 48 
                   lle+  ++++ G    + G+nG+GK+tLLR +a 
  MMETSP1061-20121228|4174_1 224 MPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMAA 259
                 668888899999999999**************9985 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 6.9e-06
   TIGR01189 103 seqktveealekvgLsg.ledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaella.aHlargGivllathqd 187
                 s+++ ++e l+++g s+ l+ + +++Ls G + R  la  + +k  l +LDEPt  l   +v  la+ l+ + + +  iv+l +h  
  MMETSP1061-20121228|4174_1 341 SASRRAKELLDNLGFSEeLQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELStSETWKERIVVLVSHDR 427
                 4455799999999997526778999************************************99999887515677888999998875 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 9.8
   TIGR01189  56 evelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqk.tveealekvgLsgled 122
                 +v ++ ke+a+ ++e ++   y+gH     ++ s  + ++  a+  ++ ++ + e+a+e + L++  +
  MMETSP1061-20121228|4174_1 465 QVLFA-KEQAKRQEEIDRLREYAGHGFKYGGSSSQINKMSMKAKQADKLEQaHEEHATELAALQEDIE 531
                 56666.44566666777888899986555555555555555555554433324455555555555555 PP

  == domain 4    score: 63.5 bits;  conditional E-value: 6.9e-20
   TIGR01189  14 vlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelae.qrdelaeel.lylgHldglKaeLsalEnLkfyaallq......seqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
                 +l+++ +f +++   +v+ G+nG GKttL++++ G l+p++G v  n ++    ++++ a+++ l ++ l+ l+++       +++++l +       ++ + ++      + +l+++p+++Ls Gq+ R+ala +  ++  + +LDEPt +lD e+v+ la+ +++     G+v+  +h + 
  MMETSP1061-20121228|4174_1 563 RLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHARFAlVNQHHADQIdLTMTPLQFLRTKFPGDGSYEHMQTLRGhlsscgVTSGSSNNNASGKRVFDLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNF---EGAVICVSHDQF 742
                 689999**************************************98865543313334444442445667777777754444444443333222232344455555666678899************************************************99975...688888888765 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0024      0.15       9      28 ..     240     259 ..     234     285 .. 0.80
   2 !   31.7   0.0   3.9e-10   2.5e-08      99     182 ..     351     436 ..     332     447 .. 0.82
   3 !   50.8   0.0   5.7e-16   3.6e-14       9     191 ..     578     759 ..     572     773 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0024
   TIGR03771   9 lgllGpnGaGkttllrailg 28 
                  gl+G nG Gk+tllra+ +
  MMETSP1061-20121228|4174_1 240 YGLIGRNGVGKSTLLRAMAA 259
                 69***************965 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 3.9e-10
   TIGR03771  99 ervkl.teladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellv.elfeelagegtailmtthdlaeavatcdr 182
                 ++  + +el+ r++ elsGG r r ++a a+  kp lllldep   l + +   l+ el ++ + +++ +++++hd     ++c  
  MMETSP1061-20121228|4174_1 351 DNLGFsEELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLArELSTSETWKERIVVLVSHDRHFMDEVCTD 436
                 555542579**************************************9988877753788888999999999***97766666655 PP

  == domain 3    score: 50.8 bits;  conditional E-value: 5.7e-16
   TIGR03771   9 lgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdf...pidveqtvl..sGragliGllrrpkkadfa...avadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvv 191
                 + llG nG Gkttl++ i+g +++++G v  +       +++   v q h    d    p++  +t +  +G   ++  lr    +  +   + ++  +  ++ +l++ p   lsGGqr rv +a     +p++l+ldep   ldl s   l++ ++++ g   a++ ++hd     ++++   ++ g vv
  MMETSP1061-20121228|4174_1 578 IVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNP------HARFALVNQHHADQIDLtmtPLQFLRTKFpgDGSYEHMQTLRGHLSSCGVtsgSSNNNASGKRVFDLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEG---AVICVSHDQFFVQSVANEAWVVSGGVV 759
                 789**************************9777......46788999***999996444778888887224566799999875544433000444455566899*********************9999********************999999988754...688889997777777777666666666 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00085     0.053      13      46 ..     226     259 ..     222     286 .. 0.88
   2 !   31.8   0.0   3.2e-10     2e-08     108     198 ..     339     431 ..     325     439 .. 0.85
   3 !   12.8   0.0    0.0002     0.013      13      63 ..     564     614 ..     559     638 .. 0.77
   4 !   34.0   0.0   6.5e-11   4.1e-09     127     198 ..     677     745 ..     665     751 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00085
   TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLnilgl 46 
                 +l++   ++  G+ + ++G+ G GKstlL  ++ 
  MMETSP1061-20121228|4174_1 226 LLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMAA 259
                 57788888999******************99875 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 3.2e-10
   TIGR03608 108 kkekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelke.egktiiivtHdpevae 198
                   + +++ ke+l+++g+ e+ + + + elsgG + R  la +++ +++l+l DEPt  L       + + l+  +  +++++++v Hd + ++
  MMETSP1061-20121228|4174_1 339 ADSASRRAKELLDNLGFsEELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETwKERIVVLVSHDRHFMD 431
                 556678899********67778899**********************************999998888888765443899********98765 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 0.0002
   TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLn.ilgllekkdsgkvilegkeka 63 
                 +++++++ i + + + ++Ge G GK+tl+  i+g le ++ g+v+ + + + 
  MMETSP1061-20121228|4174_1 564 LFRHCEFGITSKSRIVLLGENGNGKTTLVKlIIGSLEPTE-GDVLRNPHARF 614
                 78899999999999**************984578888766.77666655544 PP

  == domain 4    score: 34.0 bits;  conditional E-value: 6.5e-11
   TIGR03608 127 klkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevae 198
                  +++    lsgG++ Rvala + +  +++++ DEPt +LD ++ +++ +++k+ +     +i+v Hd+   +
  MMETSP1061-20121228|4174_1 677 LQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFE---GAVICVSHDQFFVQ 745
                 56788899**********************************9999888877664...5799*****97655 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0       0.2        13      26      45 ..     237     256 ..     222     283 .. 0.70
   2 !   32.2   0.0   1.4e-10   8.7e-09     395     498 ..     338     437 ..     327     452 .. 0.89
   3 !   16.9   0.0     6e-06   0.00038     305     341 ..     570     606 ..     563     611 .. 0.86
   4 !   36.7   0.0   6.1e-12   3.9e-10     423     506 ..     680     759 ..     663     769 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.2
   TIGR03269  26 GevlGilGksGaGksvllhl 45 
                 G+  G++G+ G Gks ll+ 
  MMETSP1061-20121228|4174_1 237 GRRYGLIGRNGVGKSTLLRA 256
                 55556666666666665543 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 1.4e-10
   TIGR03269 395 pdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdra 498
                   + a r+a   l   Gf+ee       +  +els G r r  la  +  +p +++ldept  +  ++ + +a+ +  + +  e+  v+vshd  f+ evc  +
  MMETSP1061-20121228|4174_1 338 EADSASRRAKELLDNLGFSEEL----QARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDRHFMDEVCTDC 437
                 5567899999999*****9874....4456689**********************************************9999******************765 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 6e-06
   TIGR03269 305 levkekeifGlvGtsGaGkttlskilaGvleptsGev 341
                 + ++ k    l+G  G Gkttl k+++G lept+G+v
  MMETSP1061-20121228|4174_1 570 FGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDV 606
                 556666667799***********************98 PP

  == domain 4    score: 36.7 bits;  conditional E-value: 6.1e-12
   TIGR03269 423 klpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGki 506
                   ++ ls G+r rvala v    p++++ldept  +d  +  ++a+ +    +++e + + vshd  fv++v + a ++  G +
  MMETSP1061-20121228|4174_1 680 TPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCV----KNFEGAVICVSHDQFFVQSVANEAWVVSGGVV 759
                 45678********************************87766666655....67999****************99888776654 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0054      0.34      24      49 ..     235     260 ..     222     288 .. 0.77
   2 !   26.8   0.0   1.1e-08   6.9e-07     103     198 ..     338     434 ..     330     460 .. 0.80
   3 !   13.8   0.0    0.0001    0.0066      17      58 ..     566     607 ..     559     622 .. 0.89
   4 !   38.8   0.0   2.5e-12   1.6e-10     123     216 ..     677     766 ..     672     775 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0054
   TIGR00968  24 ktGslvallGpsGsGkstllrviaGl 49 
                   G+  +l+G  G Gkstllr++a  
  MMETSP1061-20121228|4174_1 235 VWGRRYGLIGRNGVGKSTLLRAMAAR 260
                 5677889***************9974 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 1.1e-08
   TIGR00968 103 dkakikakveellelvql.eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealeva 198
                 ++    ++ +ell+ +++ e+l+ r  s+lsGG r r  la a+  +p++llldep   l       l + l       +   v+v+hd++   ev 
  MMETSP1061-20121228|4174_1 338 EADSASRRAKELLDNLGFsEELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDRHFMDEVC 434
                 556667889999999987358************************************9998877777777676666666677788888887766665 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 0.0001
   TIGR00968  17 ddvdlevktGslvallGpsGsGkstllrviaGlekpdsGril 58 
                  + ++ + + s + llG  G Gk+tl+++i G  +p++G +l
  MMETSP1061-20121228|4174_1 566 RHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 577899999999********************999*999886 PP

  == domain 4    score: 38.8 bits;  conditional E-value: 2.5e-12
   TIGR00968 123 lgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsae 216
                 l++   s lsGGqr rvala      p+vl+ldep   ld +    l   ++++      + + v+hdq     va++  v++ G ++qv+s e
  MMETSP1061-20121228|4174_1 677 LQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEG----AVICVSHDQFFVQSVANEAWVVSGGVVKQVESFE 766
                 67777899*************999****************9988888877776655....55889*************************9966 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   3.6e-11   2.3e-09      33     210 ..     242     435 ..     225     453 .. 0.76
   2 !   21.4   0.0   5.5e-07   3.4e-05      21      63 ..     568     610 ..     561     627 .. 0.84
   3 !   31.8   0.0   3.7e-10   2.3e-08     135     221 ..     676     760 ..     666     775 .. 0.90

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 3.6e-11
   TIGR03411  33 iiGpnGaGkttllDvitGktr...pdeGsvlfkgkdlt.......klkeaeiarlGigRkfqkpsvfeeltvlenlelalkadks...vlallfarlskeekerieevleligLeekadkka.glLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellk..elakersvvvvehDmefvrelae 210
                 +iG nG Gk+tll +++ +     p++ +v + +++++       k++ + ++ + i R+  + ++ e    +   el ++ +k+   vl+ l +  ++++++r +e+l+ +g +e+ ++++ ++Ls G + +  ++  +  +p+llllDeP+  ++    +  a+ l+  e  ker vv+v hD +f++e+ +
  MMETSP1061-20121228|4174_1 242 LIGRNGVGKSTLLRAMAARRVgdvPANVTVHYVSQEVSltpeqrnKTPVECVVDADIERNLLTKELKELEHLASEGELDAEGSKRhgdVLTRLDEIEADSASRRAKELLDNLGFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELStsETWKERIVVLVSHDRHFMDEVCT 435
                 8*************99765421115556666666554411221113444558899999*999998877666666666666555541116677777777888999**********99877654389*********************************99999997765125679999***********99864 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 5.5e-07
   TIGR03411  21 lslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkg 63 
                  ++ +++++  v++G nG Gkttl+ +i+G  +p+eG+vl + 
  MMETSP1061-20121228|4174_1 568 CEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNP 610
                 6777888888899*************************98765 PP

  == domain 3    score: 31.8 bits;  conditional E-value: 3.7e-10
   TIGR03411 135 ekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvl 221
                 + +++ a++Ls Gq+ ++ ++ +   +p++l+lDeP+  +  e  +  a+ +k+ ++  +v+ v hD  fv+++a++  v++ G v 
  MMETSP1061-20121228|4174_1 676 DLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEG--AVICVSHDQFFVQSVANEAWVVSGGVVK 760
                 567899**********************************************99875..89****************9999988775 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0013     0.084      28      46 ..     239     257 ..     227     264 .. 0.88
   2 !   23.9   0.0   9.7e-08   6.1e-06     103     182 ..     344     425 ..     323     442 .. 0.82
   3 !   21.7   0.0   4.6e-07   2.9e-05      21      62 ..     570     611 ..     562     622 .. 0.85
   4 !   27.5   0.0   7.5e-09   4.7e-07     120     206 ..     680     763 ..     658     771 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0013
   TIGR03740  28 vygllGpnGaGkstllkll 46 
                  ygl+G nG Gkstll+ +
  MMETSP1061-20121228|4174_1 239 RYGLIGRNGVGKSTLLRAM 257
                 5***************976 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 9.7e-08
   TIGR03740 103 srieevlkivdlent.ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqel.reliksfpekGitvilssh 182
                  r +e+l+ ++++++ + +  +++s G + r  +a a++ kP+ll+ldePtn l  l +  l rel +s + k   v+l sh
  MMETSP1061-20121228|4174_1 344 RRAKELLDNLGFSEElQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLaRELSTSETWKERIVVLVSH 425
                 5678888888886551667889************************************998868999998877777777776 PP

  == domain 3    score: 21.7 bits;  conditional E-value: 4.6e-07
   TIGR03740  21 lkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr 62 
                 + + ++s   llG nG Gk+tl+kl+ G l++t+G++l + +
  MMETSP1061-20121228|4174_1 570 FGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPH 611
                 5667777788**************************987665 PP

  == domain 4    score: 27.5 bits;  conditional E-value: 7.5e-09
   TIGR03740 120 kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkyek 206
                   a+ +s G + r+ +a   + +P++l+ldePtn ld   +  l + +k f+    +vi  sh    v+ +a++  ++s G++k  +
  MMETSP1061-20121228|4174_1 680 TPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEG---AVICVSHDQFFVQSVANEAWVVSGGVVKQVE 763
                 5688899999*****************************************75...57778999999*************9998655 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.024       1.5      34      72 ..     241     282 ..     225     288 .. 0.71
   2 !   28.0   0.0   4.3e-09   2.7e-07     107     195 ..     338     427 ..     332     434 .. 0.86
   3 !   13.9   0.0   7.9e-05     0.005      20      64 ..     565     609 ..     559     621 .. 0.89
   4 !   34.3   0.0   5.2e-11   3.3e-09     133     218 ..     683     764 ..     675     776 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.024
   TIGR03265  34 clLGPsGCGkttLLriiaGL...ekqdaGaillggrditrlp 72 
                  l+G  G Gk+tLLr++a     + + + +++   ++++ +p
  MMETSP1061-20121228|4174_1 241 GLIGRNGVGKSTLLRAMAARrvgDVPANVTVHYVSQEVSLTP 282
                 689**************9752224455556666666666544 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 4.3e-09
   TIGR03265 107 kreevaerveelLelvglsgs.eekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdq 195
                 + + +++r +elL+ +g+s+  + +  + lsGG + r  La a+  +P+lLLLDeP   L       L +el +     +   ++v hd+
  MMETSP1061-20121228|4174_1 338 EADSASRRAKELLDNLGFSEElQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDR 427
                 56778899**********976267889******************************999999999999999887777777777788875 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 7.9e-05
   TIGR03265  20 lkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillg 64 
                 +++ ++ ++    + lLG  G GkttL+++i G  ++++G +l +
  MMETSP1061-20121228|4174_1 565 FRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRN 609
                 6788999999999********************999999999876 PP

  == domain 4    score: 34.3 bits;  conditional E-value: 5.2e-11
   TIGR03265 133 gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgt 218
                 + lsGGq+ rvaLa     +P++L+LDeP   LD    + L   +k++      + i v hdq    s+a+   v+  g+++qv +
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEG----AVICVSHDQFFVQSVANEAWVVSGGVVKQVES 764
                 679*********************************99999999988765....5699*************************976 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0077      0.49      26      76 ..     240     286 ..     230     291 .. 0.81
   2 !   27.7   0.0     5e-09   3.2e-07     109     163 ..     343     398 ..     333     460 .. 0.80
   3 !   45.6   0.0   1.9e-14   1.2e-12      18     226 ..     570     774 ..     565     783 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0077
   TIGR02142  26 talFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRr 76 
                  +l Gr G Gk++l+r++a     + g +  + +v   s++ + l+pe+R+
  MMETSP1061-20121228|4174_1 240 YGLIGRNGVGKSTLLRAMAA---RRVGDVPANVTVHYVSQE-VSLTPEQRN 286
                 6899*************995...567888877777666655.999999986 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 5e-09
   TIGR02142 109 riseekvielLgie.hLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLD 163
                   + +++++ Lg + +L  R  ++LsGG + R  ++ A+ ++P+LLl+DeP   L 
  MMETSP1061-20121228|4174_1 343 SRRAKELLDNLGFSeELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLS 398
                 34677889999985167789*******************************87775 PP

  == domain 3    score: 45.6 bits;  conditional E-value: 1.9e-14
   TIGR02142  18 lelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldge.....vlqdsrkkiilppekRr.vgyvFqeArLFpHl.svrenLrYGlkraraeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdls 226
                 + + +k ++ l G+ G Gkt+l++li G + p+eg +  + +     v q  + +i+l++   + +   F     + H+ + r+ L     ++ ++++++s ++v +l +        ++ LsGG + Rva++    ++P++L++DeP   LD ++ +     L    ++++  ++ vsH+   v+ +a++  v+  G vk   + e   + + ++
  MMETSP1061-20121228|4174_1 570 FGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHarfalVNQHHADQIDLTMTPLQfLRTKFPGDGSYEHMqTLRGHLSSCGVTSGSSNNNASGKRVFDLQN------TPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAA----LADCVKNFEGAVICVSHDQFFVQSVANEAWVVSGGVVKQVESFESYRSAQ-FK 774
                 5667788999**************************99886522222445667789998876551577899999999983579999865555555555899999998654......57899********************************987655....67788889999************************999988877655443.55 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.79        50      36      56 ..     242     262 ..     227     286 .. 0.85
   2 !   35.4   0.0   2.7e-11   1.7e-09     112     206 ..     336     431 ..     329     442 .. 0.82
   3 !   11.4   0.0   0.00062     0.039      15      62 ..     559     606 ..     546     626 .. 0.78
   4 !   33.1   0.0   1.4e-10   8.9e-09     139     203 ..     682     742 ..     666     758 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.79
   TIGR02982  36 ltGpsGsGkttlltligglrs 56 
                 l G  G Gk tll  +++ r 
  MMETSP1061-20121228|4174_1 242 LIGRNGVGKSTLLRAMAARRV 262
                 67999*********9998774 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 2.7e-11
   TIGR02982 112 klsakeakakaeelleavgleerldykp.edlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklar...eqgttillvthdnrild 206
                 +++a+ a+ +a+ell ++g+ e+l+ ++ ++lsgG + r  +a a+ a+P+l+l dePt  l      +v+ l ++l+     +   ++lv hd   +d
  MMETSP1061-20121228|4174_1 336 EIEADSASRRAKELLDNLGFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSI---LAVMWLARELSTsetWKERIVVLVSHDRHFMD 431
                 567888999**************99875489****************************99965...5566666665551115677899*****99987 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.00062
   TIGR02982  15 elrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGel 62 
                 ++  +++ + ++ i++   ++l G+ G Gkttl+ li g  +  eG++
  MMETSP1061-20121228|4174_1 559 ATPARLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDV 606
                 55566777888899999999999************9877666667764 PP

  == domain 4    score: 33.1 bits;  conditional E-value: 1.4e-10
   TIGR02982 139 pedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr 203
                 ++ lsgGq+ rva+a    arP++++ dePt  ld +s  ++ + ++    +   +++ v hd+ 
  MMETSP1061-20121228|4174_1 682 ASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVK----NFEGAVICVSHDQF 742
                 468*********************************99777766665....55678899999975 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0011     0.068      19      49 ..     228     258 ..     221     291 .. 0.76
   2 !   27.2   0.0   8.2e-09   5.2e-07     121     183 ..     341     404 ..     323     440 .. 0.78
   3 !   13.1   0.0   0.00016    0.0099      17      62 ..     564     609 ..     546     625 .. 0.82
   4 !   26.6   0.0   1.2e-08   7.6e-07     137     190 ..     676     729 ..     670     745 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0011
   TIGR02315  19 knvnleikkGelvaviGlsGaGkstllrsin 49 
                 ++    +  G   ++iG+ G Gkstllr++ 
  MMETSP1061-20121228|4174_1 228 EDAACRFVWGRRYGLIGRNGVGKSTLLRAMA 258
                 55556666677789**************975 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 8.2e-09
   TIGR02315 121 edkekAlelLervglaelaakra.dqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskq 183
                 +  ++A elL+++g++e  + r+ ++LsGG + R  +a a+  +p+l+l DEP+  L   +   
  MMETSP1061-20121228|4174_1 341 SASRRAKELLDNLGFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMW 404
                 45689**********99988886499***************************99886554444 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 0.00016
   TIGR02315  17 alknvnleikkGelvaviGlsGaGkstllrsinrlveissgsille 62 
                  +++ ++ i++   ++++G+ G Gk+tl++ i +  e+++g++l +
  MMETSP1061-20121228|4174_1 564 LFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRN 609
                 46788899999999***************************99765 PP

  == domain 4    score: 26.6 bits;  conditional E-value: 1.2e-08
   TIGR02315 137 elaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkr 190
                 +l+++ a++LsGGq+ Rva+a     +p++++ DEP+  LD +s   + d +k+
  MMETSP1061-20121228|4174_1 676 DLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKN 729
                 56778899**********************************999998888886 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0031       0.2      31      48 ..     241     258 ..     226     287 .. 0.79
   2 !   26.4   0.0   1.3e-08   8.5e-07     120     209 ..     345     433 ..     330     448 .. 0.76
   3 ?    3.4   0.0      0.14       8.9      19      47 ..     567     595 ..     553     605 .. 0.87
   4 !   36.5   0.0   1.1e-11   6.8e-10     134     224 ..     674     761 ..     661     775 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0031
   TIGR00972  31 aliGpsGcGkstllrsln 48 
                 +liG  G Gkstllr++ 
  MMETSP1061-20121228|4174_1 241 GLIGRNGVGKSTLLRAMA 258
                 79*************995 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.3e-08
   TIGR00972 120 iveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeli..qeLkkkytivivthnmqqaarv 209
                 +++e L + ++ +e++ +   s  +LsGG + r  +a a+  +P++lLlDePt  L   a++ +   +  +e  k+  +v+v h+ ++  +v
  MMETSP1061-20121228|4174_1 345 RAKELLDNLGFSEELQAR---SLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELstSETWKERIVVLVSHDRHFMDEV 433
                 555556666665555443...4567*******************************999988775444115666778899999998777666 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.14
   TIGR00972  19 dvnleikknkvtaliGpsGcGkstllrsl 47 
                 + ++ i++++ ++l+G  G Gk+tl++ +
  MMETSP1061-20121228|4174_1 567 HCEFGITSKSRIVLLGENGNGKTTLVKLI 595
                 5677889999999************9865 PP

  == domain 4    score: 36.5 bits;  conditional E-value: 1.1e-11
   TIGR00972 134 vkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelvee 224
                 v d  ++ a +LsGGq+ r+++a     +P+vl+lDePt  LD ++++ + + +++ +    ++ v h+  + + v++++ ++  G +  +
  MMETSP1061-20121228|4174_1 674 VFDLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEG--AVICVSHDQFFVQSVANEAWVVSGGVV-KQ 761
                 5666778899*************99999***************************9976..6999****9999999998766655554.43 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.48        30     485     524 ..     214     254 ..     210     259 .. 0.79
   2 !   16.6   0.0   6.3e-06    0.0004     616     677 ..     365     430 ..     353     455 .. 0.87
   3 !   24.5   0.0   2.5e-08   1.6e-06     478     539 ..     546     607 ..     536     624 .. 0.95
   4 !   33.1   0.0   6.4e-11   4.1e-09     616     699 ..     683     767 ..     674     777 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.48
   TIGR00958 485 sFsYPsrp.dkpvlkdLtftlepGevvalVGPsGsGKStva 524
                 sF+ P+     p+l+d +     G+   l+G +G GKSt  
  MMETSP1061-20121228|4174_1 214 SFTLPNPGgGMPLLEDAACRFVWGRRYGLIGRNGVGKSTLL 254
                 566666431568888888888899999************86 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 6.3e-06
   TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstv 677
                 s lsgG + r  +A A+  kP +L+LDe t  L         + l +s+++k+r v+l+ h  + +
  MMETSP1061-20121228|4174_1 365 SELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSIlavmWLARELSTSETWKERIVVLVSHDRHFM 430
                 579***************************99988766767888999*************976655 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 2.5e-08
   TIGR00958 478 kveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvl 539
                 +v+ + V F YP     ++++   f +++ + + l G +G+GK t + l+    +Pt+G+vl
  MMETSP1061-20121228|4174_1 546 VVQLKSVGFGYPGATPARLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 5899********************************************************98 PP

  == domain 4    score: 33.1 bits;  conditional E-value: 6.4e-11
   TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkq 699
                 s lsgGq+ r+A+A     +P vL+LDe t  LD e+ ++l +  ++ + +v+ + h    v+  a++  v++ g v+++  ++ 
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEGAVICVSHDQFFVQSvANEAWVVSGGVVKQVESFES 767
                 679****************************************99999999****998888886367778888888888776665 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0       0.2        13       1      18 [.     242     259 ..     242     288 .. 0.83
   2 !   29.7   0.0   1.1e-09   6.9e-08      68     161 ..     333     427 ..     331     434 .. 0.83
   3 !    9.2   0.0    0.0019      0.12       1      28 [.     580     607 ..     580     618 .. 0.94
   4 !   33.1   0.0   1.1e-10   6.7e-09      98     186 ..     682     766 ..     673     773 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.2
   TIGR01187   1 lLGpsGsGkttlLrllaG 18 
                 l+G  G Gk+tlLr +a 
  MMETSP1061-20121228|4174_1 242 LIGRNGVGKSTLLRAMAA 259
                 6899**********9996 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.1e-09
   TIGR01187  68 kmrkvpkaeikervkeaLelvql.eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDq 161
                 ++++++++  + r ke+L+   + ee+ +r  s+lsGG r r  la a+  kP++LLlDep   L       +  el + +      vvlv hD+
  MMETSP1061-20121228|4174_1 333 RLDEIEADSASRRAKELLDNLGFsEELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDR 427
                 5667777888899999999887736788999******************************9998877777777777777777777777777775 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0019
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkil 28 
                 lLG  G Gkttl++l+ G  e+ +G +l
  MMETSP1061-20121228|4174_1 580 LLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 89***********************986 PP

  == domain 4    score: 33.1 bits;  conditional E-value: 1.1e-10
   TIGR01187  98 psqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepe 186
                  s lsGGqr rvala     +P++L+lDep   LD +    +   +k+++     +v+ v hDq    ++++   v++ G ++q+++ e
  MMETSP1061-20121228|4174_1 682 ASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFE----GAVICVSHDQFFVQSVANEAWVVSGGVVKQVESFE 766
                 578************9999****************988777776666665....478***************************98765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.053       3.3      28      49 ..     237     258 ..     226     287 .. 0.83
   2 !   32.5   0.0   2.1e-10   1.3e-08     104     199 ..     336     437 ..     327     471 .. 0.81
   3 !   12.4   0.0   0.00027     0.017      28      60 ..     575     607 ..     563     620 .. 0.84
   4 !   24.9   0.0   4.3e-08   2.7e-06     132     210 ..     683     759 ..     676     777 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.053
   TIGR03522  28 GeivGflGPnGaGkstlmkilt 49 
                 G+  G++G nG Gkstl++ ++
  MMETSP1061-20121228|4174_1 237 GRRYGLIGRNGVGKSTLLRAMA 258
                 7889*************98776 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 2.1e-10
   TIGR03522 104 klkgrklkkrveelielvGlkae.qhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlvei.revik.eiakdktvilst...himqevealc 199
                 +++     +r +el+++ G+++e q + +++ls G+r r  la+a+  +P++l+ldePt  l    ++ + re+   e  k++ v+l +   h m ev + c
  MMETSP1061-20121228|4174_1 336 EIEADSASRRAKELLDNLGFSEElQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLaRELSTsETWKERIVVLVShdrHFMDEVCTDC 437
                 56667788999*********99967789**********************************9877776536665414567777777651225676665555 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 0.00027
   TIGR03522  28 GeivGflGPnGaGkstlmkiltgylkadsGsva 60 
                  + + +lG nG Gk+tl+k++ g l+++ G v 
  MMETSP1061-20121228|4174_1 575 KSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 444558************************986 PP

  == domain 4    score: 24.9 bits;  conditional E-value: 4.3e-08
   TIGR03522 132 galskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGki 210
                 +als G r rv la+     P+vl+ldePt  ld + + ++ + +k+     +vi  +h    v+++ ++  ++  G +
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFE--GAVICVSHDQFFVQSVANEAWVVSGGVV 759
                 789*******************************************985..5677777888888888888877776655 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.0     0.014      0.87      24      70 ..     237     285 ..     233     304 .. 0.70
   2 !   20.5   0.0     1e-06   6.5e-05     115     202 ..     352     440 ..     337     450 .. 0.80
   3 !   17.9   0.0   6.4e-06    0.0004      21      58 ..     572     609 ..     562     620 .. 0.85
   4 !   28.6   0.0   3.3e-09   2.1e-07     127     211 ..     683     763 ..     669     765 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.014
   TIGR01277  24 GervailGesGaGkstllnliaGf.lepasGeikvndkd.htrsapyer 70 
                 G r  ++G  G Gkstll  +a   +  +  +++v+ ++  ++++p +r
  MMETSP1061-20121228|4174_1 237 GRRYGLIGRNGVGKSTLLRAMAARrVGDVPANVTVHYVSqEVSLTPEQR 285
                 677889************9887651334555555554431234455555 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 1e-06
   TIGR01277 115 qvGiad.ylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvv 202
                 ++G ++ + +r   elsGG r r  la  +  +  +llldep   l  +    +   ++++   k++ ++lv+h+ + + ++ +  + v
  MMETSP1061-20121228|4174_1 352 NLGFSEeLQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDRHFMDEVCTDCLHV 440
                 66665514578899******************999**********9876666566678999999**********987776666666555 PP

  == domain 3    score: 17.9 bits;  conditional E-value: 6.4e-06
   TIGR01277  21 veaGervailGesGaGkstllnliaGflepasGeikvn 58 
                 + +  r+ +lGe G Gk+tl++li G lep++G++  n
  MMETSP1061-20121228|4174_1 572 ITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRN 609
                 56678999*************************98765 PP

  == domain 4    score: 28.6 bits;  conditional E-value: 3.3e-09
   TIGR01277 127 eelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvls 211
                   lsGGqr rvala        +l+ldep   ld     e +a ++  +++ + +++ v+h+   ++++a++  vv+ G +k+++
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDL----ESVAALADCVKNFEGAVICVSHDQFFVQSVANEAWVVSGGVVKQVE 763
                 579***********99888889*******999984....7888899999999*****************************9986 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0    0.0019      0.12      19      56 ..     222     259 ..     212     285 .. 0.79
   2 !   28.0   0.0   4.6e-09   2.9e-07     120     219 ..     337     437 ..     330     441 .. 0.79
   3 !   34.9   0.0   3.7e-11   2.3e-09      25     218 ..     566     750 ..     558     755 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0019
   TIGR02324  19 vklpvlkevsleveaGelvalsGksGaGkstllkslya 56 
                   +p l++   +   G    l+G+ G Gkstll+++ a
  MMETSP1061-20121228|4174_1 222 GGMPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMAA 259
                 4567788888888889999***************9866 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 4.6e-09
   TIGR02324 120 vereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanr.kvvvelikeakargaaligifhdeevrelvadre 219
                 +e ++a  +akell +l  +e L + + +  sGG + R  +a a+ a+  +LLLdePt  L         +el ++   +   ++ + hd++  + v++  
  MMETSP1061-20121228|4174_1 337 IEADSASRRAKELLDNLGFSEELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVmWLARELSTSETWKERIVVLVSHDRHFMDEVCTDC 437
                 57889******************************************7778999*****996543303445665555555566677778877777776655 PP

  == domain 3    score: 34.9 bits;  conditional E-value: 3.7e-11
   TIGR02324  25 kevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrv.iPRvsa...levvaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadr 218
                 ++ ++ +++   ++l G+ G Gk tl+k + ++  p  g +l + +  +  lv+ ++ + +++  + +    qfLr   P   +   ++ +   l + Gv++ +++++a+   + ++    L + + +  sGG + Rv +a    a   +L+LdePt  Ld      v  l + +k+   a+i + hd++  ++va+ 
  MMETSP1061-20121228|4174_1 566 RHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHARFA-LVNQHHADQIDLTMTPL----QFLRTkFPGDGSyehMQTLRGHLSSCGVTSGSSNNNASGK-RVFD----LQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLES---VAALADCVKNFEGAVICVSHDQFFVQSVANE 750
                 6677888888999****************************999877777.99999999999987777....6776535765551115566778999999999888887643.3333....46678999************99988566899********7655...56777777888899*******9988887765 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.32        20     353     385 ..     224     256 ..     190     268 .. 0.80
   2 !   21.3   0.0     3e-07   1.9e-05     435     511 ..     326     401 ..     318     428 .. 0.82
   3 !   27.6   0.0   3.7e-09   2.3e-07     309     398 ..     518     607 ..     493     632 .. 0.89
   4 !   21.6   0.0   2.5e-07   1.6e-05     475     520 ..     683     728 ..     674     762 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.32
   TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllel 385
                 ++ l++   +   G++  l+G  G Gkstll+ 
  MMETSP1061-20121228|4174_1 224 MPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRA 256
                 56677777788889999*************985 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 3e-07
   TIGR02204 435 ryGrpdasdeeveaaakaaeadefisklpeGydtllGergv.tLsGGqkqriaiarailkdapiLLLdeatsaLdaes 511
                 r+G +    +e+ea + + +a+e++ +l  G++ +l  r++ +LsGG + r  +a ai+++  +LLLde t+ L   +
  MMETSP1061-20121228|4174_1 326 RHGDVLTRLDEIEADSASRRAKELLDNL--GFSEELQARSLsELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILA 401
                 6777777788999999999*******98..9********9836****************************9987655 PP

  == domain 3    score: 27.6 bits;  conditional E-value: 3.7e-09
   TIGR02204 309 erliellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGail 398
                 e  +el+  ++di+ P +  a  +     +++++v f yP  +    +++ ++ + +  ++ l G  G Gk+tl++l++   +P++G +l
  MMETSP1061-20121228|4174_1 518 EHATELAALQEDIELPLKISAGGEIDGFVVQLKSVGFGYPGATPARLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 667899999*******99877666555578*********************************************************997 PP

  == domain 4    score: 21.6 bits;  conditional E-value: 2.5e-07
   TIGR02204 475 vtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqale 520
                   LsGGq+ r+a+a   ++   +L+Lde t+ Ld es  ++   ++
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVK 728
                 579*********************************9887766655 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00064      0.04     442     499 ..     200     257 ..     191     281 .. 0.82
   2 !   18.2   0.0   2.4e-06   0.00015     587     619 ..     365     397 ..     360     408 .. 0.92
   3 !   14.8   0.0   2.5e-05    0.0016     441     511 ..     535     607 ..     495     611 .. 0.85
   4 !   28.3   0.0   2.1e-09   1.3e-07     586     670 ..     682     767 ..     677     774 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00064
   TIGR03797 442 kvdpgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlL 499
                 +++ g  +Ga++  + t      g+  L+d +++   G   +++G  G GKStllr +
  MMETSP1061-20121228|4174_1 200 RTRLGAYRGALDATSFTLPNPGGGMPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAM 257
                 6667788888888888888888999*******************************76 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 2.4e-06
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSAL 619
                 + lSGG r R ++A a+  kP +ll+DE T  L
  MMETSP1061-20121228|4174_1 365 SELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHL 397
                 689*************************99765 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 2.5e-05
   TIGR03797 441 ekvdpgkLsG.aievdrvtFrYekdgp.lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvl 511
                 + ++ g++ G  +++++v F Y   +p + +++  + i     + + G+ G GK tl++l++g  +P++G vl
  MMETSP1061-20121228|4174_1 535 KISAGGEIDGfVVQLKSVGFGYPGATPaRLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 555667888834689*******87766257899*************************************996 PP

  == domain 4    score: 28.3 bits;  conditional E-value: 2.1e-09
   TIGR03797 586 ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirn.adrilvleeGrvveqGsyee 670
                 +++lSGGQr R+ +A     +P++l++DE T  LD ++ a+  + +++++ + i + H    ++  a+   v++ G v +  s+e+
  MMETSP1061-20121228|4174_1 682 ASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEGAVICVSHDQFFVQSvANEAWVVSGGVVKQVESFES 767
                 579*******************************************************9888876488999999999999888876 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0     0.014      0.91     490     525 ..     222     257 ..     176     265 .. 0.76
   2 !   10.9   0.0   0.00031     0.019     613     647 ..     364     398 ..     349     425 .. 0.84
   3 !   28.7   0.0   1.3e-09   8.1e-08     471     546 ..     534     616 ..     493     630 .. 0.71
   4 !   26.0   0.0   8.7e-09   5.5e-07     613     671 ..     682     740 ..     669     768 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.014
   TIGR03796 490 leapliedfslslkpGqrvAlvGgsGsGkstiaklv 525
                    pl+ed   +   G+r  l+G  G Gkst+ + +
  MMETSP1061-20121228|4174_1 222 GGMPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAM 257
                 5679***************************98866 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00031
   TIGR03796 613 ganlsGGqrqRleiARaLvknPsiLilDEatsaLD 647
                  + lsGG r R  +A a+ ++P +L+lDE t  L 
  MMETSP1061-20121228|4174_1 364 LSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLS 398
                 4789***************************9875 PP

  == domain 3    score: 28.7 bits;  conditional E-value: 1.3e-09
   TIGR03796 471 k.....ekLsGk.velrnvtfgysa.leapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreei 546
                        +++G  v+l+ v fgy   + a l ++ ++ +++ +r+ l G  G Gk t+ kl+ G  ep++G++l + + r ++
  MMETSP1061-20121228|4174_1 534 LkisagGEIDGFvVQLKSVGFGYPGaTPARLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHARFAL 616
                 144455777885279********8515678*******************************************9877766655 PP

  == domain 4    score: 26.0 bits;  conditional E-value: 8.7e-09
   TIGR03796 613 ganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHR 671
                 ++ lsGGqr R+ +A    ++P +L+lDE t  LD e   a+ + +++   ++i v+H 
  MMETSP1061-20121228|4174_1 682 ASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEGAVICVSHD 740
                 5789*****************************************************96 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   3.8e-12   2.4e-10      26     220 ..     237     443 ..     223     461 .. 0.80
   2 !   11.0   0.0   0.00071     0.045      23      57 ..     572     604 ..     561     624 .. 0.74
   3 !   21.7   0.0   3.9e-07   2.5e-05     144     214 ..     684     751 ..     674     768 .. 0.86

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 3.8e-12
   TIGR01978  26 GevhaimGpnGsGkstLskvlaghekyevts.GeiklkgqdlleleveeraraGlflafqapeeipGv..snkeflrsalnavrkargeee..........ldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlld 220
                 G  + ++G+nG GkstL +++a ++   v +  ++++  q++ +l++e+r ++ +   + a  e   +  + ke+ + a +   +a+g+++          +++ + ++  ke l+ l ++eel+ Rsl e  sGG + r+ +    + +P+l +LDe    l + a+  +a+++++ ++  e+ +++++h +++++++  d +hv  +
  MMETSP1061-20121228|4174_1 237 GRRYGLIGRNGVGKSTLLRAMAARRVGDVPAnVTVHYVSQEV-SLTPEQRNKTPVECVVDADIERNLLtkELKELEHLASEGELDAEGSKRhgdvltrldeIEADSASRRAKELLDNLGFSEELQARSLSE-LSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWkERIVVLVSHDRHFMDEVCTDCLHVSGA 443
                 6667799******************99996515677776665.799*****99987777766665444114566777777766666665545555566555777888899999999*************87.9*******************************************999874777889****************99655 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00071
   TIGR01978  23 vkkGevhaimGpnGsGkstLskvlaghekyevtsG 57 
                 +++    +++G nG+Gk tL+k ++g+   e t+G
  MMETSP1061-20121228|4174_1 572 ITSKSRIVLLGENGNGKTTLVKLIIGSL--EPTEG 604
                 555566799***************9964..44555 PP

  == domain 3    score: 21.7 bits;  conditional E-value: 3.9e-07
   TIGR01978 144 GfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdv 214
                   sGG + r  +  +++ +P++ +LDe    lD++++ ++a++v+++   e a++ ++h + ++++++ + 
  MMETSP1061-20121228|4174_1 684 ALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNF---EGAVICVSHDQFFVQSVANEA 751
                 57***************************************999887...5799******99999987664 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0         1        63      19      39 ..     237     257 ..     222     272 .. 0.80
   2 !   38.3   0.0   2.8e-12   1.8e-10      96     192 ..     332     432 ..     327     436 .. 0.93
   3 !   16.3   0.0   1.4e-05   0.00087      12      51 ..     568     607 ..     562     620 .. 0.89
   4 !   15.3   0.0   2.8e-05    0.0018     128     210 ..     683     761 ..     674     767 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 1
   TIGR01186  19 GeiiviiGlsGsGkstlvrll 39 
                 G  + +iG  G Gkstl+r +
  MMETSP1061-20121228|4174_1 237 GRRYGLIGRNGVGKSTLLRAM 257
                 5566799**********9965 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 2.8e-12
   TIGR01186  96 lellkideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd...lde 192
                  +l +i+++   ++a+e+l  +++ ee + r   elsGG + r  la a+ a+Pdlll+de+   l  l    l  el   ++  ++ +v+++hd   +de
  MMETSP1061-20121228|4174_1 332 TRLDEIEADSASRRAKELLDNLGFsEELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDrhfMDE 432
                 57889999999*************99********************************************************************9555555 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 1.4e-05
   TIGR01186  12 vdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkil 51 
                  ++ i+    iv++G  G Gk+tlv+l+   +ePt+G +l
  MMETSP1061-20121228|4174_1 568 CEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 56778888889**************************997 PP

  == domain 4    score: 15.3 bits;  conditional E-value: 2.8e-05
   TIGR01186 128 delsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivq 210
                   lsGG++ rv la    a P +l++de+   ld          l +  k+ + +++ ++hd      +++   ++  G + q
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAA----LADCVKNFEGAVICVSHDQFFVQSVANEAWVVSGGVVKQ 761
                 579*******************************755555....555556777888999998766666666666666555555 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0         1        63      12      31 ..     237     256 ..     227     281 .. 0.82
   2 !   31.0   0.0   5.2e-10   3.3e-08      95     193 ..     337     434 ..     325     444 .. 0.84
   3 ?    3.9   0.0       0.1       6.5       4      39 ..     567     602 ..     564     625 .. 0.85
   4 !   34.0   0.0   6.2e-11   3.9e-09     124     215 ..     683     769 ..     664     779 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 1
   TIGR02770  12 gkvlalvGesGsGksltala 31 
                 g+  +l+G  G Gks+   a
  MMETSP1061-20121228|4174_1 237 GRRYGLIGRNGVGKSTLLRA 256
                 67789**********86554 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 5.2e-10
   TIGR02770  95 ls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaela 193
                 ++ ++a  ++ e l++ g +  ee+      elsGG   R m+a a+ +++ ll+ DePt  l + + + + ++l++ +  ++  ++l++hD   + e+ 
  MMETSP1061-20121228|4174_1 337 IEaDSASRRAKELLDNLGFS--EELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDRHFMDEVC 434
                 44466777777777777776..7777777889************************************************************87776655 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.1
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldke 39 
                 + ++ +     + l+Ge G Gk++  + i+g l++ 
  MMETSP1061-20121228|4174_1 567 HCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPT 602
                 6677888888899************99999999864 PP

  == domain 4    score: 34.0 bits;  conditional E-value: 6.2e-11
   TIGR02770 124 felsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215
                   lsGG   Rv +a  + +++ +l+ DePt +lD+ + a     l + +++++ +++ ++hD   v  +a+e  v++ G +v +++  e + 
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVA----ALADCVKNFEGAVICVSHDQFFVQSVANEAWVVSGG-VVKQVESFESYR 769
                 579*******************************98755....6788899999*********************99755.777777666655 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.015      0.93      27      56 ..     230     259 ..     221     288 .. 0.79
   2 !   23.7   0.0   7.5e-08   4.7e-06     116     201 ..     343     428 ..     332     438 .. 0.85
   3 ?   -2.1   0.0       5.1   3.2e+02      70     111 ..     435     477 ..     432     484 .. 0.83
   4 !    8.1   0.0    0.0041      0.26      33      66 ..     574     607 ..     546     615 .. 0.86
   5 !   29.9   0.0   9.3e-10   5.9e-08     137     220 ..     683     761 ..     672     772 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.015
   TIGR03258  27 lsleieaGellallGksGsGkttllravaG 56 
                  +     G    l+G+ G Gk+tllra+a 
  MMETSP1061-20121228|4174_1 230 AACRFVWGRRYGLIGRNGVGKSTLLRAMAA 259
                 5555556777889**************985 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 7.5e-08
   TIGR03258 116 aervadalklvqlsd.aaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrd 201
                 ++r  + l  +++s+   ar  ++lsGG + r  la a+  +pd+llldep   l       +  el +  +   e  v+ v+hdr+
  MMETSP1061-20121228|4174_1 343 SRRAKELLDNLGFSEeLQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELST-SETWKERIVVLVSHDRH 428
                 56677778888888625788899*******************************999888899999976.57788999999999985 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 5.1
   TIGR03258  70 rdlthlppykrnlallvqnyalfphlkveenvafGl.rarkqs 111
                 +d  h+    r+l+    ny+l+ + +  e+v f   +a++q 
  MMETSP1061-20121228|4174_1 435 TDCLHVSGAARKLTQCKGNYSLWAKRRKDEQVLFAKeQAKRQE 477
                 7889999999*********************999752456554 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0041
   TIGR03258  33 aGellallGksGsGkttllravaGfvkadGGrll 66 
                 +   + llG+ G Gkttl++++ G +++  G +l
  MMETSP1061-20121228|4174_1 574 SKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 5556789******************999988765 PP

  == domain 5    score: 29.9 bits;  conditional E-value: 9.3e-10
   TIGR03258 137 aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslia 220
                 + lsGGq+ rvala     rp+vl+ldep   ld +  a++ + +k++     e +v++v+hd+     +a+ + ++  G + +
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNF-----EGAVICVSHDQFFVQSVANEAWVVSGGVVKQ 761
                 579*******************************99988888888876.....5689*******99999999999998887765 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0061      0.39      22      51 ..     229     258 ..     220     297 .. 0.80
   2 !   24.1   0.1   5.6e-08   3.5e-06     132     218 ..     363     451 ..     330     459 .. 0.78
   3 !   33.1   0.1   9.8e-11   6.2e-09      24     168 ..     569     717 ..     562     729 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0061
   TIGR01288  22 dlsftiaagecfgllgpngagkstiarlvl 51 
                 d +     g  +gl+g ng gkst+ r + 
  MMETSP1061-20121228|4174_1 229 DAACRFVWGRRYGLIGRNGVGKSTLLRAMA 258
                 55666677999*************999765 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 5.6e-08
   TIGR01288 132 rvadlsggmkrrltlaralindpqllildepttgldpharhliw.erlrsllargktilltthlmeeaerlc.drlcvleagrkiaegr 218
                  +++lsgg + r  la+a+   p+ll+ldept  l   a   +  e   s   + + ++l +h     + +c d l v  a rk+++ +
  MMETSP1061-20121228|4174_1 363 SLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLArELSTSETWKERIVVLVSHDRHFMDEVCtDCLHVSGAARKLTQCK 451
                 5799********************************99876554044556667788888887655555555546788888888887765 PP

  == domain 3    score: 33.1 bits;  conditional E-value: 9.8e-11
   TIGR01288  24 sftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfd.nldreftvrenllvfgryfglstre..iee.vips..llefa...rleskadvrvadlsggmkrrltlaralindpqllildepttgldp 168
                  f i++   + llg ng gk+t+ +l++g   p eg   vl +p   +ar a ++     q+d ++ +    r ++   g y  ++t    + +  + s    + a   r+    +++ + lsgg + r++la+     p++l+ldept  ld 
  MMETSP1061-20121228|4174_1 569 EFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGD--VLRNP---HARFALVNQHHADQIDlTMTPLQFLRTKFPGDGSYEHMQTLRghLSScGVTSgsSNNNAsgkRVFDLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDL 717
                 699999999***************************7..56655...5777877777777877444555557888888999999988541232212333112233222377778899**********************************996 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0     0.038       2.4      15      46 ..     226     257 ..     222     283 .. 0.84
   2 !   26.8   0.0   9.4e-09   5.9e-07     118     215 ..     337     435 ..     330     453 .. 0.80
   3 ?    3.9   0.0     0.088       5.5      19      54 ..     568     604 ..     560     623 .. 0.79
   4 !   26.3   0.0   1.3e-08   8.2e-07     144     217 ..     682     751 ..     674     771 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.038
   TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilril 46 
                 +l+++      G++  liG  G Gkst+lr +
  MMETSP1061-20121228|4174_1 226 LLEDAACRFVWGRRYGLIGRNGVGKSTLLRAM 257
                 567777778889999***************75 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 9.4e-09
   TIGR03005 118 varaeaekravelldmvGladkadalp.aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlas.e..tdltmllvthemgfarefad 215
                 ++   a +ra elld +G+++  +a   ++lsGG + r  +a a+  +p +ll+de+t  l       v+ + r+l++ e  ++  ++lv+h+  f  e++ 
  MMETSP1061-20121228|4174_1 337 IEADSASRRAKELLDNLGFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSIL---AVMWLARELSTsEtwKERIVVLVSHDRHFMDEVCT 435
                 55667999************9988754389*****************************99754...45555566653131156788999999999988865 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.088
   TIGR03005  19 lelevaaGekvaliGpsGsGkstilrilm.tletide 54 
                  e+ +++  ++ l+G  G Gk+t++++++ +le+ ++
  MMETSP1061-20121228|4174_1 568 CEFGITSKSRIVLLGENGNGKTTLVKLIIgSLEPTEG 604
                 567778888999*************977625776544 PP

  == domain 4    score: 26.3 bits;  conditional E-value: 1.3e-08
   TIGR03005 144 paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrv 217
                  + lsGGq+ rva+a     rp+vl++de+t  ld e v  + + ++    + + +++ v+h+  f + +a+  
  MMETSP1061-20121228|4174_1 682 ASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVK----NFEGAVICVSHDQFFVQSVANEA 751
                 467************99999***************988876655555....55667888888888888888765 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.083       5.3     473     503 ..     227     257 ..     207     282 .. 0.85
   2 !   17.1   0.0   4.6e-06   0.00029     582     650 ..     354     425 ..     339     444 .. 0.86
   3 !   10.2   0.0   0.00056     0.036     451     515 ..     541     607 ..     531     622 .. 0.87
   4 !   31.4   0.0   2.1e-10   1.3e-08     592     667 ..     683     757 ..     667     772 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.083
   TIGR01846 473 lsnlsldikaGeviGivGpsGsGkstltkll 503
                 l++ +     G+  G++G+ G Gkstl + +
  MMETSP1061-20121228|4174_1 227 LEDAACRFVWGRRYGLIGRNGVGKSTLLRAM 257
                 55556666678999*************9876 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 4.6e-06
   TIGR01846 582 GyetevgekG.aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlr..eickgrtviiiah 650
                 G+ +e++ +  ++lsGG r r  la a+ a+P +l+lde t  l   +   + r+l+  e  k+r v+ ++h
  MMETSP1061-20121228|4174_1 354 GFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELStsETWKERIVVLVSH 425
                 7888887776368*******************************9999999999986326789999999998 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00056
   TIGR01846 451 elkG.aiefenirfrykedspe.vlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvl 515
                 e++G  ++++ + f y   +p  ++++ ++ i++   i + G+ G Gk+tl kl+     P +G vl
  MMETSP1061-20121228|4174_1 541 EIDGfVVQLKSVGFGYPGATPArLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 566623689*******99987527799*****************************9999***9998 PP

  == domain 4    score: 31.4 bits;  conditional E-value: 2.1e-10
   TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraa.drilvlekG 667
                 +alsGGqr r+ala    a P++l+lde t  ld es a++ + +++   + +vi+++h    v+++ ++  v+  G
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNF--EGAVICVSHDQFFVQSVaNEAWVVSGG 757
                 68**************************************99998886..457999999877776541344444444 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0066      0.42     328     377 ..     206     255 ..     196     265 .. 0.86
   2 !   11.8   0.0   0.00021     0.013     439     501 ..     336     397 ..     328     403 .. 0.81
   3 !   20.2   0.0     6e-07   3.8e-05     332     392 ..     547     608 ..     523     625 .. 0.88
   4 !   23.1   0.0   7.7e-08   4.9e-06     468     511 ..     682     725 ..     676     749 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0066
   TIGR02203 328 vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvn 377
                  rG ++  + t   pg +++ l++   +   G++  l+Gr G Gkstl++
  MMETSP1061-20121228|4174_1 206 YRGALDATSFTLPNPGGGMPLLEDAACRFVWGRRYGLIGRNGVGKSTLLR 255
                 678888888899999999*****************************986 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00021
   TIGR02203 439 eveealaaaylkdlvdklpeGldtevGeng.skLsGGqRqRlaiaRallkdaPiLiLDeatsaL 501
                 e+e+  a   +k+l+d+l  G+  e+  ++ s+LsGG R R  +a a++    +L+LDe t  L
  MMETSP1061-20121228|4174_1 336 EIEADSASRRAKELLDNL--GFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHL 397
                 556666666778888875..7777776554389**************************99866 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 6e-07
   TIGR02203 332 vefrnvtfrypgdd.realdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeill 392
                 v++++v f ypg+  +  +++ ++ +++  ++ l G  G Gk+tlv+l+   +ep++G++l 
  MMETSP1061-20121228|4174_1 547 VQLKSVGFGYPGATpARLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLR 608
                 6899*******9872556799**************************************985 PP

  == domain 4    score: 23.1 bits;  conditional E-value: 7.7e-08
   TIGR02203 468 gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqa 511
                 +s LsGGqR R+a+a   +    +L+LDe t  LD es  ++ +
  MMETSP1061-20121228|4174_1 682 ASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALAD 725
                 689************99999999**************9765554 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.085       5.4      14      33 ..     240     259 ..     227     285 .. 0.76
   2 !   23.1   0.0   1.6e-07     1e-05     106     174 ..     358     426 ..     330     438 .. 0.84
   3 !   11.0   0.0   0.00081     0.051       8      43 ..     572     607 ..     566     612 .. 0.86
   4 !   21.1   0.0   6.7e-07   4.2e-05     110     174 ..     680     740 ..     673     762 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.085
   TIGR01184  14 islighsgcgkstllnliag 33 
                   lig  g gkstll  +a 
  MMETSP1061-20121228|4174_1 240 YGLIGRNGVGKSTLLRAMAA 259
                 579************98775 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 1.6e-07
   TIGR01184 106 eaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                 e + +  ++lsgg + r  +a a+  +p+lllldep   l  l+   l  +l      ++  v++v+hd
  MMETSP1061-20121228|4174_1 358 ELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHD 426
                 45667889*******************************************999888888999999999 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00081
   TIGR01184   8 ikkgefislighsgcgkstllnliaglekptsgavi 43 
                 i     i l+g  g gk+tl+ li g  +pt+g v 
  MMETSP1061-20121228|4174_1 572 ITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 55666799*************************986 PP

  == domain 4    score: 21.1 bits;  conditional E-value: 6.7e-07
   TIGR01184 110 krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                    + lsgg + rva+a     rp++l+ldep   ld  +   l     + v++ + +v+ v+hd
  MMETSP1061-20121228|4174_1 680 TPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALA----DCVKNFEGAVICVSHD 740
                 55678************9999***************975555444....4455555566666665 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0066      0.42      28      51 ..     234     257 ..     223     279 .. 0.84
   2 !   21.1   0.0   4.3e-07   2.7e-05     109     211 ..     334     437 ..     329     454 .. 0.82
   3 ?    2.6   0.0      0.19        12      36      67 ..     580     611 ..     568     630 .. 0.82
   4 !   24.3   0.0   4.9e-08   3.1e-06     135     219 ..     679     759 ..     672     775 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0066
   TIGR02314  28 vpkgqifgvigasgagkstlircv 51 
                    g+ +g+ig  g gkstl+r +
  MMETSP1061-20121228|4174_1 234 FVWGRRYGLIGRNGVGKSTLLRAM 257
                 556899****************86 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 4.3e-07
   TIGR02314 109 lentpkekikrkvtellalvglsdkkdsyp.snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdev 211
                 l++   +   r+ +ell  +g+s+  ++   s+lsgg + r  +a a+ ++p +ll de t  l   +   +   l   +   +  ++l++h+ + + ++c   
  MMETSP1061-20121228|4174_1 334 LDEIEADSASRRAKELLDNLGFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDRHFMDEVCTDC 437
                 6777788999*************998876439*******************************99887777777676666667777889999988888888543 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.19
   TIGR02314  36 vigasgagkstlircvnllekptsgavivdgk 67 
                 ++g  g gk+tl++ +    +pt+g+v+ + +
  MMETSP1061-20121228|4174_1 580 LLGENGNGKTTLVKLIIGSLEPTEGDVLRNPH 611
                 6899**********9988888******97655 PP

  == domain 4    score: 24.3 bits;  conditional E-value: 4.9e-08
   TIGR02314 135 dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgel 219
                 ++  s lsggq+ rva+a    + p+vl+ de t  ld  +  ++ + +k+    ++ +++ ++h+   v+++ +e  v+++g +
  MMETSP1061-20121228|4174_1 679 NTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKN----FEGAVICVSHDQFFVQSVANEAWVVSGGVV 759
                 556789********************************9877776666665....55678899************9999998854 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   5.3e-09   3.4e-07      54     197 ..     240     397 ..     224     425 .. 0.65
   2 ?    2.0   0.0       0.2        13      54      72 ..     578     596 ..     572     623 .. 0.85
   3 !   26.0   0.0   1.1e-08     7e-07     165     209 ..     683     727 ..     676     740 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 5.3e-09
   TIGR00955  54 lAvlGsSGaGKtTLlnalafrsekglkvsgd.......vllnGekveakemraisayvq...qddlfiptltvrehLmfsahl.............rlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGL 197
                   ++G  G GK+TLl a+a r+  ++  + +       v l  e+ +++    + + v    + +l+ + l   ehL  + +l             rl++ + +++  +r +e+l++lg ++  + r      +  lSgG r R  la  +  +P lL++DEPT  L
  MMETSP1061-20121228|4174_1 240 YGLIGRNGVGKSTLLRAMAARRVGDVPANVTvhyvsqeVSLTPEQRNKTP---VECVVDadiERNLLTKELKELEHLASEGELdaegskrhgdvltRLDE-IEADSASRRAKELLDNLGFSEELQARS-----LSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHL 397
                 5689******************9999887762221222333333333333...344443222678999999999***99998822222222222222322.344444555556666666555444333.....34599**************************988 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.2
   TIGR00955  54 lAvlGsSGaGKtTLlnala 72 
                 + +lG  G GKtTL++ + 
  MMETSP1061-20121228|4174_1 578 IVLLGENGNGKTTLVKLII 596
                 5689**********99875 PP

  == domain 3    score: 26.0 bits;  conditional E-value: 1.1e-08
   TIGR00955 165 kglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvL 209
                  +lSgG+r R+ala      P++L++DEPT  LD  s a +   +
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCV 727
                 58********************************87766665555 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.9   1.2e+02     484     520 ..     221     257 ..     191     260 .. 0.82
   2 !   12.3   0.0   0.00015    0.0093     598     654 ..     352     409 ..     332     434 .. 0.78
   3 !   19.7   0.0   8.4e-07   5.3e-05     476     537 ..     549     612 ..     537     631 .. 0.80
   4 !   21.5   0.0   2.5e-07   1.6e-05     609     689 ..     682     761 ..     674     771 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.9
   TIGR01193 484 GygsevledislkikknekitlvGlsGsGkstlakll 520
                 G g ++led   +    ++  l+G  G Gkstl + +
  MMETSP1061-20121228|4174_1 221 GGGMPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAM 257
                 556778888888888899999************8866 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00015
   TIGR01193 598 plGyqtelseea.ssisgGqkqrlalarallsdskvlildestsnldlltekkivenl 654
                 +lG++ el   + s++sgG + r  la a++++ ++l+lde t +l +l    +  +l
  MMETSP1061-20121228|4174_1 352 NLGFSEELQARSlSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLAREL 409
                 479999997655278******************************9998766555554 PP

  == domain 3    score: 19.7 bits;  conditional E-value: 8.4e-07
   TIGR01193 476 vndvsysy..GygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngks 537
                 ++ v + y     ++++ + ++ i+++++i+l+G  G Gk+tl+kl+++  ++++G++l n++ 
  MMETSP1061-20121228|4174_1 549 LKSVGFGYpgATPARLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHA 612
                 55566666312235678899999***********************************988764 PP

  == domain 4    score: 21.5 bits;  conditional E-value: 2.5e-07
   TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsvakksdkiivldeGkiieq 689
                 as++sgGq+ r+ala   ++  +vl+lde t nldl     + + + ++ + ++i v+h     + + +   + +G+++ q
  MMETSP1061-20121228|4174_1 682 ASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNF-EGAVICVSHDQFFVQSVANEAWVVSGGVVKQ 761
                 689********************************98777766666666.8899999997666665555555556666655 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   9.6e-09   6.1e-07      22     178 ..     232     403 ..     221     447 .. 0.72
   2 ?    5.9   0.0     0.013       0.8      30      49 ..     578     597 ..     566     609 .. 0.81
   3 !   19.3   0.0   1.1e-06   7.1e-05     400     482 ..     681     760 ..     674     775 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 9.6e-09
   TIGR02633  22 lklraGeivslcGenGaGkstlmkvlsgvyphGtydGe..ilfegeel..kassirdterkGiviihqel.tlvkelsvleniflGneitlkGglmd...........ydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsasltekete 178
                  +   G   +l G nG Gkstl++ +++    G+   +  +++  +e+    ++ ++t  + +v    e   l kel  le +    e+  +G++ +            d   +rakell +l  +++ ++r +s+l +G +    +a a+  +  ll+ldep+  l+   + 
  MMETSP1061-20121228|4174_1 232 CRFVWGRRYGLIGRNGVGKSTLLRAMAA-RRVGDVPANvtVHYVSQEVslTPEQRNKTPVECVVDADIERnLLTKELKELEHLASEGELDAEGSKRHgdvltrldeieADSASRRAKELLDNLGFSEELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVM 403
                 5566678889**************9987.56777765511677766651155566677777777666555146899******99999999988765511111111111445578**************************************************999765554 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.013
   TIGR02633  30 vslcGenGaGkstlmkvlsg 49 
                 + l GenG Gk+tl+k++ g
  MMETSP1061-20121228|4174_1 578 IVLLGENGNGKTTLVKLIIG 597
                 6799************8765 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 1.1e-06
   TIGR02633 400 piarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklk 482
                 p ++lsGG++ +  la +   +p+vl+ldept  +d+ + + +   ++++  eG a+i vs +   v  +++   v+  G +k
  MMETSP1061-20121228|4174_1 681 PASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNF--EG-AVICVSHDQFFVQSVANEAWVVSGGVVK 760
                 6789********************************98877766666654..33.7788888888888888877777777665 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.056       3.5      54      71 ..     241     258 ..     226     287 .. 0.79
   2 !   27.3   0.1   5.8e-09   3.6e-07     141     224 ..     342     426 ..     333     434 .. 0.89
   3 ?    1.7   0.0      0.34        21      48      73 ..     573     598 ..     565     637 .. 0.75
   4 !   13.6   0.0     8e-05     0.005     158     247 ..     678     763 ..     673     768 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.056
   TIGR03415  54 vlmGlsGsGkssllravn 71 
                  l+G  G Gks+llra+ 
  MMETSP1061-20121228|4174_1 241 GLIGRNGVGKSTLLRAMA 258
                 6999***********985 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 5.8e-09
   TIGR03415 141 rrkrveeqlelvgla.eWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                   +r++e l+ +g++ e + +   elsGG + r  la a+  + d+ll+deP   l  l    l  el +  +  ++ +v+vshd
  MMETSP1061-20121228|4174_1 342 ASRRAKELLDNLGFSeELQARSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHD 426
                 5678899998888862579999***********************************************9999999********9 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.34
   TIGR03415  48 eeGeilvlmGlsGsGkssllravngl 73 
                 +    +vl+G  G Gk++l++ + g 
  MMETSP1061-20121228|4174_1 573 TSKSRIVLLGENGNGKTTLVKLIIGS 598
                 5555689*************988664 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 8e-05
   TIGR03415 158 adkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlg 247
                 +++ +  lsGG + rv la        +l++deP   ld    a l d +    k+++ +++ vshd      + n+  ++ gG + q++
  MMETSP1061-20121228|4174_1 678 QNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCV----KNFEGAVICVSHDQFFVQSVANEAWVVSGGVVKQVE 763
                 6777889***********988778899************98888888876....56678899****988777888887777777777665 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   7.1e-07   4.5e-05      23     188 ..     234     413 ..     228     430 .. 0.69
   2 !   23.0   0.0   1.6e-07     1e-05      30     217 ..     578     759 ..     562     765 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 7.1e-07
   TIGR02323  23 flypGevlgivGesGsGkstllkalaarll...adaGevty.........esrsr.elellalseaerrlllrtewGlvhqnprG.lrmevsa.GanigerllavgarhyGkiraaakwlekveidaari..kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrel 188
                 f++ G+  g++G  G Gkstll a+aar +   + + +v+y         e+r++  +e +  ++ er ll +    l h  + G l  e s   +++  rl  + a      r+a++ l+++   ++      +++sGG + r  +a ++ ++p l+++ ept  l s+ a + l r+l +  
  MMETSP1061-20121228|4174_1 234 FVW-GRRYGLIGRNGVGKSTLLRAMAARRVgdvPANVTVHYvsqevsltpEQRNKtPVECVVDADIERNLLTKELKELEHLASEGeLDAEGSKrHGDVLTRLDEIEA--DSASRRAKELLDNLGFSEELQarSLSELSGGWRVRTMLAAAIFAKPDLLLLdEPTNHL-SILAVMWLARELSTSE 413
                 444.77889*****************997522255677888322222222344444556666667778877777667777777753666655425778888877755..4455566667887766653222255789**********************99999876.8999999999998754 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 1.6e-07
   TIGR02323  30 lgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl..vsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrvv 217
                 + ++Ge G Gk+tl+k + + l +++G+v  +       l++   a++  l  t   +++ +  G          +   l   g+   G  +++a+  +  ++++  +  +a+sGG + r+ +a +  +rp+++++ ept  l   sv a    l   v++++ avi v+h    ++ +a+   v+  G vv
  MMETSP1061-20121228|4174_1 578 IVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHA-RFALVNQHHADQIDLTMTPLQFLRTKFPGDGSY-EHMQTLRGHLSSCGV-TSGSSNNNASGKRVFDLQN--TPASALSGGQRSRVALAAVSFARPHVLVLdEPTNNLdlESVAA----LADCVKNFEGAVICVSHdQFFVQSVANEAWVVS-GGVV 759
                 6789************************9876666.667888899999999999999998876654332.233445556666666.5677777777666555555..77899*******************987777****997456655....6789*************8777888888888877.4444 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   8.6e-05    0.0055    1215    1280 ..     207     274 ..     178     288 .. 0.79
   2 !   12.7   0.0   5.2e-05    0.0033     549     584 ..     367     402 ..     357     471 .. 0.80
   3 !   15.8   0.0   6.3e-06    0.0004     447     582 ..     570     718 ..     559     730 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.6e-05
   TIGR01271 1215 ggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsall..rllstegeiqidgv 1280
                   g ++  ++t     +g  +l+d +     g+r gl+gr g gkstll a+   r+ +   ++++  v
  MMETSP1061-20121228|4174_1  207 RGALDATSFTLPNPGGGMPLLEDAACRFVWGRRYGLIGRNGVGKSTLLRAMAarRVGDVPANVTVHYV 274 
                  5667777778888889999*****************************99852245555555555555 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 5.2e-05
   TIGR01271 549 lsggqrarislaravykdadlylldspfsyldvvte 584
                 lsgg r r  la a++   dl lld p ++l +++ 
  MMETSP1061-20121228|4174_1 367 LSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAV 402
                 788888888888888888888888888888888754 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 6.3e-06
   TIGR01271 447 lklekgqllavagstgsgkssllmmilgelepsegkikhs..grisf.....spqvswimpg..tikdniifglsydeyr.ytsvikacqleediallaekdktv..lgeg.gitlsggqrarislaravykdadlylldspfsyldvv 582
                 + +     + + g  g gk++l+ +i+g lep+eg +      r +      + q+   m     ++ +     sy+ ++  +  + +c +    +      k v  l +    +lsggqr+r++la   +    + +ld p + ld+ 
  MMETSP1061-20121228|4174_1 570 FGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNphARFALvnqhhADQIDLTMTPlqFLRTKFPGDGSYEHMQtLRGHLSSCGVTSGSSNNNASGKRVfdLQNTpASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLE 718
                 55555566778899*********************997651145544111114566666643113566665567898876368899*****999887766666552255542678*******************************985 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00037     0.023     479     616 ..     237     399 ..     209     403 .. 0.71
   2 !   28.4   0.0   1.8e-09   1.2e-07     468     640 ..     564     741 ..     491     745 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00037
   TIGR00954 479 GnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg...............................wdavq.dWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsv 616
                 G+   +iG nG GKs l R ++        +  +p++  + yv q   ++    R++      ++  +er+l  k+L++ Le++  e  l+ eg+                                + +q     +LsgG + R  +A  ++ kP   +LDE t+ +s+
  MMETSP1061-20121228|4174_1 237 GRRYGLIGRNGVGKSTLLRAMAA-----RRVGDVPANVTVHYVSQEVSLTPE-QRNKTPVECVVDADIERNLLTKELKE-LEHLASEGELDAEGSkrhgdvltrldeieadsasrrakelldnlgfSEELQaRSLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSI 399
                 66666789999999999998874.....345678999999999998666543.34444444444444555555555544.444444555555555555588899999999999999999999988633333044589*****************************9886 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 1.8e-09
   TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfR.ilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeev..kLedlleregg.............wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrk 640
                 l  + +f + s + ++++G nG GK  l + i+g l P+ g +l  p+  ++  v q          dqi   ++  +f +  +      + ++++  +L+       +             +d  +     LsgG++ R+a+A + + +P+  vLDE t+ + ++   +l + +k+++ +++ vsh +
  MMETSP1061-20121228|4174_1 564 LFRHCEFGITSKSRIVLLGENGNGKTTLVKlIIGSLEPTEGDVLRNPHA-RFALVNQ-------HHADQIDLTMTPLQFLRTKFPGDGSYEHMQTLrgHLSSCGV---TsgssnnnasgkrvFDLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNFEGAVICVSHDQ 741
                 667788999999***************998578********99999875.4445555.......568***********999866544444444544113444322...23336888899999999999999*******************************************************975 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0026      0.17     468     504 ..     363     399 ..     324     427 .. 0.77
   2 !   12.0   0.0   0.00019     0.012     322     393 ..     533     607 ..     497     627 .. 0.80
   3 !   18.1   0.0   2.8e-06   0.00017     470     515 ..     683     728 ..     658     768 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0026
   TIGR01192 468 rgnrlsggerqrlaiarailknapilvldeatsaldv 504
                   ++lsgg r r  +a ai+    +l+lde t  l +
  MMETSP1061-20121228|4174_1 363 SLSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSI 399
                 3489****************************98876 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00019
   TIGR01192 322 padarelknvkg.avefrdisfefans..sqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqil 393
                 p +++   ++ g  v+++ + f+++ +  ++  r+  f + +   + ++g  g gkttl+ l+    +p++g +l
  MMETSP1061-20121228|4174_1 533 PLKISAGGEIDGfVVQLKSVGFGYPGAtpARLFRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVL 607
                 555555556666347999999999876225668899************************************987 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 2.8e-06
   TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvetearvkdaid 515
                 + lsgg+r r+a+a   +    +lvlde t  ld+e+ a + d + 
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVK 728
                 78**********************************9877665554 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.1e-06   0.00013    2030    2150 ..     325     446 ..     219     482 .. 0.81
   2 !   18.0   0.0   8.4e-07   5.3e-05     959    1113 ..     578     735 ..     526     758 .. 0.58

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.1e-06
   TIGR01257 2030 rehlylyarlrgvpaeeiekvanwsikslgls..lyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwnti.vsiiregravvltshsmeecealctrlaimvkgafqc 2150
                  + h  + +rl  + a+   + a+  ++ lg+s  l a       sgg + +   a a+   p l+lldept  +   a   l   +  s   ++r vvl sh     + +ct   + v ga + 
  MMETSP1061-20121228|4174_1  325 KRHGDVLTRLDEIEADSASRRAKELLDNLGFSeeLQARS-LSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELsTSETWKERIVVLVSHDRHFMDEVCTDC-LHVSGAARK 446 
                  456677889999999999999999999999983344444.46789999999999*********************999877765441678899********9877777777753.444554433 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 8.4e-07
   TIGR01257  959 taflghngagktttlsiltgllpptsgtvlvggkd...ietnldavrqslgmcpqhnil..fhhltvaehilfyaqlkgrsweeaql..emeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrti 1113
                    +lg ng gktt + ++ g l pt g vl   +    +  +  a +  l m p + +   f      eh+     l+g+           +       +   +n  a  lsgg + ++++a       +v+vldept  +d  s  ++ d + ++  g  i
  MMETSP1061-20121228|4174_1  578 IVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHArfaLVNQHHADQIDLTMTPLQFLRtkFPGDGSYEHMQ---TLRGHLSSCGVTsgSSNNNASGKRVFDLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVKNF-EGAVI 735 
                  346777777777777777777777777777654431112223334444567777554331133344455553...344433222222002222223344556677777777777766666665555666777777777777777776666654433.34444 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0       1.7   1.1e+02     372     387 ..     242     257 ..     236     260 .. 0.87
   2 ?   -1.4   0.0       2.2   1.4e+02     442     532 ..     344     429 ..     329     435 .. 0.71
   3 !   32.0   0.0   1.6e-10     1e-08     337     552 ..     547     763 ..     540     765 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.7
   TIGR01194 372 ivGenGcGkstlikll 387
                 ++G nG Gkstl++ +
  MMETSP1061-20121228|4174_1 242 LIGRNGVGKSTLLRAM 257
                 68**********9865 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 2.2
   TIGR01194 442 dqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddry 532
                  +a++ l++l++ + ++    +    ++ls G r r  l +a + +  +lllde +          +  el      + + ++++shd ++
  MMETSP1061-20121228|4174_1 344 RRAKELLDNLGFSEELQAR--S---LSELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELSTSETWKERIVVLVSHDRHF 429
                 4577777777777665443..3...3499**********99999999999***98777666666666677777777777777777777655 PP

  == domain 3    score: 32.0 bits;  conditional E-value: 1.6e-10
   TIGR01194 337 lelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqattylsrleled........kvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvkevk 552
                 ++lk v + y+ +  +  f     ++ i+s   + ++GenG Gk+tl+kl++G   p eG++l + +a  +   + + d     ++   +  +   p ++    ++  + +ls  ++            +v dl+ + +++ls Gqr r+al +  +    vl+lde + + d          l   +k    +++ +shd+ + +   +   + +G vvk+v+
  MMETSP1061-20121228|4174_1 547 VQLKSVGFGYPGATPARLFRH--CEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNPHARFALVNQHHADQIDLTMTPLQF-LRTKFPGDGSYEHMQTLRGHLSSCGVTSgssnnnasGKRVFDLQNTPASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESV----AALADCVKNFEGAVICVSHDQFFVQSVANEAWVVSGGVVKQVE 763
                 677888888887777777765..45667777778899****************************9987666666665555555554433.333445688888899999999999886411111111346899999999*************998888888******9998886532....3455556777778888899888887666666677777888876 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0         1        64    1312    1329 ..     237     254 ..     212     282 .. 0.67
   2 !    7.6   0.0    0.0017      0.11     760     828 ..     366     433 ..     349     488 .. 0.82
   3 !   13.4   0.0   3.2e-05     0.002     634     804 ..     544     728 ..     527     768 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 1
   TIGR00957 1312 gekvgivgrtgagksslt 1329
                  g + g++gr g gks+l 
  MMETSP1061-20121228|4174_1  237 GRRYGLIGRNGVGKSTLL 254 
                  556666666666666653 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0017
   TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqv 828
                 +lsgg + r  la a++++ d+ lld+p   +   +a   + + +      k++  +lv+h   ++ +v
  MMETSP1061-20121228|4174_1 366 ELSGGWRVRTMLAAAIFAKPDLLLLDEPTNHLSI-LAVMWLARELSTSETWKERIVVLVSHDRHFMDEV 433
                 69**************************987754.5555566667777778888888888888887665 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 3.2e-05
   TIGR00957 634 gnsitvknatftwardepptl.ngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalk..gsvayvpqqawiqndslrenilf........gkaleekyykavleacalladl.eilpsgdrt.eigek.gvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvi 804
                 g+ + +k+  f +    p  l +  ++ i   + + ++g+ g gk++l+  +++ ++  eg v  +     a v q    q d     + f        g   + +  +  l +c + +   +   sg r  ++ +     lsggq+ rv+la   ++   + +ld+p   +d      + + v 
  MMETSP1061-20121228|4174_1 544 GFVVQLKSVGFGYPGATPARLfRHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLEPTEGDVLRNphARFALVNQHHADQIDLTMTPLQFlrtkfpgdGSYEHMQTLRGHLSSCGVTSGSsNNNASGKRVfDLQNTpASALSGGQRSRVALAAVSFARPHVLVLDEPTNNLDLESVAALADCVK 728
                 57777888888888888877635678888888888888999999999999999999999998865411567778887766666544444441111121122222334445566666655431444556554234333145789999999999999999999999999988888665555555554 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.04       2.5     785     816 ..     233     263 ..     167     281 .. 0.82
   2 ?    1.1   0.0      0.19        12     907     933 ..     372     397 ..     364     412 .. 0.76
   3 ?    1.9   0.0       0.1       6.5      78     112 ..     566     600 ..     550     625 .. 0.77
   4 !   12.0   0.0   9.7e-05    0.0061     900     958 ..     683     737 ..     677     742 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.04
   TIGR00956 785 wvkPGkltALmGasGAGkttLlnvLaeRvttG 816
                  ++ G+   L+G  G Gk tLl ++a R  +G
  MMETSP1061-20121228|4174_1 233 RFVWGRRYGLIGRNGVGKSTLLRAMAARR-VG 263
                 55566666788888888888888888883.44 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.19
   TIGR00956 907 RkrltigveLvAkPklllFlDePtsGL 933
                 R r  ++  + AkP+l l lDePt  L
  MMETSP1061-20121228|4174_1 372 RVRTMLAAAIFAKPDL-LLLDEPTNHL 397
                 67888889999***65.569****877 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.1
   TIGR00956  78 kdvdglikpgelvvvLGrPgsGcstlLksiaskte 112
                 ++++  i +   +v+LG+ g G++tl+k i +++e
  MMETSP1061-20121228|4174_1 566 RHCEFGITSKSRIVLLGENGNGKTTLVKLIIGSLE 600
                 55655555555678899999999999998887765 PP

  == domain 4    score: 12.0 bits;  conditional E-value: 9.7e-05
   TIGR00956 900 eGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCt 958
                 + L+  qR r++++    A+P  +l lDePt  LD  + +++   +++      a++C 
  MMETSP1061-20121228|4174_1 683 SALSGGQRSRVALAAVSFARP-HVLVLDEPTNNLDLESVAALADCVKNFE---GAVICV 737
                 567777888888888888888.4555888888888888888888777753...255555 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00078     0.049       7      49 ..     241     281 ..     237     296 .. 0.80
   2 ?    6.4   0.1     0.025       1.6       3      25 ..     575     597 ..     573     604 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00078
   TIGR00231   7 vivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieed 49 
                 +++G+ +vGKstLl  ++ + +      + vt +yv++ +   
  MMETSP1061-20121228|4174_1 241 GLIGRNGVGKSTLLRAMAARRV--GDVPANVTVHYVSQEVSLT 281
                 89***************99993..3333499999999877655 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.025
   TIGR00231   3 eikivivGhvdvGKstLlnsllk 25 
                 + +iv++G+ + GK+tL + +++
  MMETSP1061-20121228|4174_1 575 KSRIVLLGENGNGKTTLVKLIIG 597
                 568**************998875 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.075       4.7     470     550 ..     349     428 ..     301     436 .. 0.71
   2 !   11.4   0.0   0.00022     0.014     825     878 ..     681     731 ..     676     754 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.075
   TIGR00630 470 fLvdvGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlG.ntlivvehDee 550
                 +L ++G++    +r+ + lsGG + r+ la+ i ++    l +lDeP   L     + L + l +        +++v hD +
  MMETSP1061-20121228|4174_1 349 LLDNLGFSEELQARSLSELSGGWRVRTMLAAAIFAKP--DLLLLDEPTNHLSILAVMWLARELSTSETWKeRIVVLVSHDRH 428
                 5666777776777888888888888888888887764..4667888876666555555555555444433033444556655 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00022
   TIGR00630 825 pattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlv 878
                 pa +LsGG   rv La+   +r     + +lDePt  L ++ ++ L + ++++ 
  MMETSP1061-20121228|4174_1 681 PASALSGGQRSRVALAAVSFAR---PHVLVLDEPTNNLDLESVAALADCVKNFE 731
                 8999***********9876655...5689*****************99998764 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.5   1.6e+02      50      68 ..     244     262 ..     241     284 .. 0.78
   2 !   12.2   0.0   0.00031      0.02      22      69 ..     555     601 ..     549     608 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.5
   TIGR03015  50 GevGaGkttlvrnllkkle 68 
                 G  G Gk tl+r +  +  
  MMETSP1061-20121228|4174_1 244 GRNGVGKSTLLRAMAARRV 262
                 7789*********987764 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00031
   TIGR03015  22 lygskahkralayleyGlsereGfilitGevGaGkttlvrnllkklea 69 
                  y+  +  r   + e+G+++++  i++ Ge G Gkttlv+ ++ +le+
  MMETSP1061-20121228|4174_1 555 GYPGATPARLFRHCEFGITSKS-RIVLLGENGNGKTTLVKLIIGSLEP 601
                 566666677788899***9876.58888************99988875 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00041     0.026     135     164 ..     235     264 ..     228     271 .. 0.82
   2 ?   -3.1   0.0       8.9   5.6e+02      32      67 ..     728     763 ..     715     771 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00041
   TIGR03496 135 gkGqrlglfagsGvGKsvLlgmlaratead 164
                   G r gl+   GvGKs+Ll  +a     d
  MMETSP1061-20121228|4174_1 235 VWGRRYGLIGRNGVGKSTLLRAMAARRVGD 264
                 579*****************9998765554 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 8.9
   TIGR03496  32 esveaevvgfeeeklllmpleeveglalgakvvlle 67 
                 +++e+ v+ ++++++++ ++ + + ++ g  v ++e
  MMETSP1061-20121228|4174_1 728 KNFEGAVICVSHDQFFVQSVANEAWVVSGGVVKQVE 763
                 678999************999999999998887665 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0      0.13       8.1      28      44 ..     242     258 ..     237     267 .. 0.89
   2 ?    6.1   0.0     0.018       1.1      22      43 ..     574     595 ..     559     600 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.13
   TIGR00611  28 lvGeNgqGKtnlleaiy 44 
                 l+G Ng GK  ll+a+ 
  MMETSP1061-20121228|4174_1 242 LIGRNGVGKSTLLRAMA 258
                 89************985 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.018
   TIGR00611  22 spgvnvlvGeNgqGKtnlleai 43 
                 s+ + vl+GeNg GKt l++ i
  MMETSP1061-20121228|4174_1 574 SKSRIVLLGENGNGKTTLVKLI 595
                 445569************9866 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00064      0.04     139     167 ..     570     598 ..     562     607 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00064
   TIGR02788 139 laiaakkniiisGgtgsgKTTflkalvkl 167
                   i++k  i++ G  g gKTT++k ++  
  MMETSP1061-20121228|4174_1 570 FGITSKSRIVLLGENGNGKTTLVKLIIGS 598
                 57999*******************99976 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.15       9.6       4     116 ..     241     352 ..     238     369 .. 0.58
   2 ?    5.5   0.1     0.064       4.1       2      19 ..     577     594 ..     576     599 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.15
   TIGR02528   4 mliGsvgcGkttLtqaLkgeeikyk.ktqaveykdkaiD.tPGeylenrryYsaLlvtaadadvivlvqsatdeesllspg.fasifakeviglvtkidlaeadkeierakelLee 116
                  liG+ g Gk tL +a+    +        v y ++ +  tP e   +r+      v  ad++   l ++ ++ e+l s g + + + k+   ++t+ d  ead++  rakelL +
  MMETSP1061-20121228|4174_1 241 GLIGRNGVGKSTLLRAMAARRVGDVpANVTVHYVSQEVSlTP-E---QRNKTPVECVVDADIERNLLTKELKELEHLASEGeLDAEGSKRHGDVLTRLDEIEADSASRRAKELLDN 352
                 589999999999999998887754303445666665554244.3...222222233444455555555666665555555413344455666677777777777777777776655 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.064
   TIGR02528   2 rimliGsvgcGkttLtqa 19 
                 ri+l+G+ g GkttL++ 
  MMETSP1061-20121228|4174_1 577 RIVLLGENGNGKTTLVKL 594
                 99*************976 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         3   1.9e+02      33      59 ..     242     268 ..     242     278 .. 0.88
   2 ?   -3.7   0.1       5.4   3.4e+02    1213    1277 ..     374     434 ..     373     438 .. 0.68
   3 ?   -4.0   0.0       6.9   4.4e+02      32      45 ..     579     592 ..     577     594 .. 0.87
   4 ?   10.2   0.0   0.00035     0.022    1213    1248 ..     692     727 ..     688     754 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3
   TIGR00606  33 lvGPnGaGkttiiealkyittGdlPpg 59 
                 l+G nG Gk t++ a+     Gd+P++
  MMETSP1061-20121228|4174_1 242 LIGRNGVGKSTLLRAMAARRVGDVPAN 268
                 6799*************9999999986 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 5.4
   TIGR00606 1213 rlalaevfclnCgiialdePttnldrekieslaialveiiksrsrqrdlqllvithdedlvellg 1277
                  r  la     +  ++ ldePt  l    +  la  l     +  ++r   ++++ hd ++++ + 
  MMETSP1061-20121228|4174_1  374 RTMLAAAIFAKPDLLLLDEPTNHLSILAVMWLARELST--SETWKER--IVVLVSHDRHFMDEVC 434 
                  5667766667778999*****99999888888887753..2222333..4566778888877765 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 6.9
   TIGR00606  32 llvGPnGaGkttii 45 
                 +l G nG Gktt++
  MMETSP1061-20121228|4174_1 579 VLLGENGNGKTTLV 592
                 689*********87 PP

  == domain 4    score: 10.2 bits;  conditional E-value: 0.00035
   TIGR00606 1213 rlalaevfclnCgiialdePttnldrekieslaial 1248
                  r+ala v      ++ ldePt nld e + +la  +
  MMETSP1061-20121228|4174_1  692 RVALAAVSFARPHVLVLDEPTNNLDLESVAALADCV 727 
                  99*****99999*************99998777543 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.061       3.8     199     223 ..     238     262 ..     226     271 .. 0.86
   2 ?   -1.4   0.1       6.3   3.9e+02     133     164 ..     326     367 ..     274     380 .. 0.59
   3 ?   -0.2   0.2       2.7   1.7e+02      63     125 ..     470     531 ..     437     543 .. 0.51
   4 ?    4.5   0.0       0.1       6.5     196     217 ..     574     593 ..     563     596 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.061
   TIGR03499 199 gviaLvGptGvGKTTTlAKLAarfv 223
                 + + L+G  GvGK T l  +Aar v
  MMETSP1061-20121228|4174_1 238 RRYGLIGRNGVGKSTLLRAMAARRV 262
                 45789*************9**9965 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 6.3
   TIGR03499 133 l..........eeedperakllkklleagvseelarellekl 164
                 +           e d+  +++ + l++ g+seel  + l++l
  MMETSP1061-20121228|4174_1 326 RhgdvltrldeIEADSASRRAKELLDNLGFSEELQARSLSEL 367
                 234444444445667777778888888888888877776665 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 2.7
   TIGR03499  63 eeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkelle 125
                 +e+ak+++e ++ ++++ +  k   ++++ +k +++a++a k + +a+ee   el+al+e +e
  MMETSP1061-20121228|4174_1 470 KEQAKRQEEIDRLREYAGHGFKYGGSSSQINKMSMKAKQADKLE-QAHEEHATELAALQEDIE 531
                 33333333333333333333333333333333333333333333.333556666666666655 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.1
   TIGR03499 196 ekggviaLvGptGvGKTTTlAK 217
                 +k   i+L+G  G GKTT l+K
  MMETSP1061-20121228|4174_1 574 SKS-RIVLLGENGNGKTT-LVK 593
                 444.799*********86.555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                      229  (0.0558264); expected 82.0 (0.02)
Passed Vit filter:                       102  (0.0248659); expected 4.1 (0.001)
Passed Fwd filter:                        65  (0.0158459); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              65  [number of targets reported over threshold]
# CPU time: 1.45u 0.24s 00:00:01.69 Elapsed: 00:00:01.13
# Mc/sec: 907.71
//
Query:       MMETSP1061-20121228|4177_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.1   0.1      0.066   10.5   0.0    2.0  2  TIGR03870 ABC_MoxJ: methanol oxidation system protein MoxJ


Domain annotation for each model (and alignments):
>> TIGR03870  ABC_MoxJ: methanol oxidation system protein MoxJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.42   1.7e+03     141     162 ..      31      52 ..      23      59 .. 0.77
   2 ?   10.5   0.0   1.6e-05     0.066      45      64 ..     326     345 ..     318     439 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.42
   TIGR03870 141 karrnkyvqideeklveevaeg 162
                 ++r n+++  d+  ++++v + 
  MMETSP1061-20121228|4177_1  31 NSRNNEFITGDQVNIINKVTNN 52 
                 4566889999999999999876 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 1.6e-05
   TIGR03870  45 daiylvrDgldkklCDvvvG 64 
                 ++iylvrD+l +  CD ++ 
  MMETSP1061-20121228|4177_1 326 PPIYLVRDFLTHAECDFLIR 345
                 99**************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       672  (0.163823); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.55
# Mc/sec: 1262.30
//
Query:       MMETSP1061-20121228|4180_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 763.65
//
Query:       MMETSP1061-20121228|4187_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.5    4.6   9.1        3.6    4.5   6.3    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   6.3   0.00089       3.6      87     151 ..      19      84 ..       1      90 [. 0.55

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00089
   TIGR00601  87 PaatpesaptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsa.esegdsdretl 151
                  aa+ +   +++    + s+++k+ ++P+  ++ +s+ + ++t+t++++ed ++ +++g+ ++  l
  MMETSP1061-20121228|4187_1  19 AAAAKRKREEAGAVGSDESLSAKPLDTPSERRNGKSTITTTTTTTTTTKEDQTTdSASGKPSAADL 84 
                 122222222222245567888888999999999888888877777776666555055555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.45
# Mc/sec: 269.84
//
Query:       MMETSP1061-20121228|4182_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1259.90
//
Query:       MMETSP1061-20121228|4191_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 241.98
//
Query:       MMETSP1061-20121228|4183_1  [L=875]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (875 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.49
# Mc/sec: 2356.95
//
Query:       MMETSP1061-20121228|4185_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.12s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 1932.91
//
Query:       MMETSP1061-20121228|4188_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-20   69.3   3.2    7.2e-20   68.9   2.2    1.1  1  TIGR00983 3a0801s02tim23: mitochondrial import inner membrane translocase subunit


Domain annotation for each model (and alignments):
>> TIGR00983  3a0801s02tim23: mitochondrial import inner membrane translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   2.2   1.8e-23   7.2e-20      22     147 ..      44     172 ..      33     174 .. 0.84

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 1.8e-23
   TIGR00983  22 eGanksRgwtedlcfgtGtayltGlaiGalvGlreGlketesisttklrlnriLnsvtrrGallgnslGilaLvYnainsl.....ieaargkedvansvaAGaltGalykstrGlraiavssalvataag 147
                 + ++k Rg    ++   G +yl G ++G+l Gl++G+ +t+s  + k+++n +Ln+ +r G+ +gnslG+ a++Y+ ++ l     +++ +g e+++  + A ++tG+ y +  G+r +a ++++++ a g
  MMETSP1061-20121228|4188_1  44 DFDQKGRGVVVTMFANSGLSYLMGIGAGGLYGLQRGIASTPSS-KFKVQVNSVLNNAGRYGSWMGNSLGVCAVMYSLFEGLgdnleLDRYTGIENTTPPL-AAMMTGMTYYAPSGIRVAALAGTIGLGAVG 172
                 557899999999999************************9886.579*****************************998762221144445555555554.669*********************998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 943.48
//
Query:       MMETSP1061-20121228|4192_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1805.85
//
Query:       MMETSP1061-20121228|4194_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 2549.28
//
Query:       MMETSP1061-20121228|4199_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.47    6.3   8.0       0.56    6.1   5.5    1.1  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter


Domain annotation for each model (and alignments):
>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   5.5   0.00014      0.56     767     802 ..      18      53 ..       4      61 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00014
   TIGR00844 767 vperkvqdlldsedesaddeaeseneedyedsddna 802
                 +   + +dl+ds+d+ adde ++ene++ +d dd  
  MMETSP1061-20121228|4199_1  18 IQTATIHDLVDSDDDDADDENNTENESNDNDDDDDK 53 
                 556678*******************99988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 599.95
//
Query:       MMETSP1061-20121228|4197_1  [L=845]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.18s 00:00:00.61 Elapsed: 00:00:00.46
# Mc/sec: 2424.58
//
Query:       MMETSP1061-20121228|4205_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 685.09
//
Query:       MMETSP1061-20121228|4201_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       464  (0.113116); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.20
# Mc/sec: 1880.84
//
Query:       MMETSP1061-20121228|4208_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 350.45
//
Query:       MMETSP1061-20121228|4206_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.51
# Mc/sec: 1042.97
//
Query:       MMETSP1061-20121228|4209_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 833.93
//
Query:       MMETSP1061-20121228|4202_1  [L=671]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-16   57.1   0.0    2.4e-16   56.6   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.5e-05   22.4   0.0    2.6e-05   21.6   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.011   12.2   0.0      0.019   11.4   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
       0.33    7.4   4.7       0.56    6.6   3.3    1.3  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   2.3e-19   2.4e-16       5     186 ..     130     311 ..     127     322 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 2.3e-19
   TIGR03903   5 kvaikllRedaaeeerlvaRFrReialCarLsh...PnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLR.....gep...vtaksDlYaWGLivleCLtGk 186
                 +va+k + +  ++++      +Re+++  +Lsh   P++ +L      +    +   e++ G  l e L  +G+ +  + +r + q  D+l   h++G vh DLkP+n+++ a+  +++ k++DFG +  +p+ ++    +l     v     Y+ Pe L      g +   +t++ D++a G+iv   LtG 
  MMETSP1061-20121228|4202_1 130 EVALKSIPIYRPDDH--EESLHREVSAMVALSHpghPHVCRLYHPPMRDHSHSYLAMEFIGGGELFEQLCEKGPFSERDAARFLRQFADGLRYIHSKGYVHADLKPENLLMGAE--QTCLKIVDFGGS--VPDNDE-SDVRLPHHRTVA----YSPPESLAaakdgGGAvphPTPEGDMFAAGVIVYTVLTGT 311
                 566666666644433..34578999999999863337************************************************************************99875..689******976..466666.445666665554....44455443111113222347*******************7 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.5e-08   2.6e-05      68     137 ..     176     254 ..     165     263 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.5e-08
   TIGR03724  68 dpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivkddkly..liDfGLgk 137
                 d++++ + me i g +l + l ek         ++l+++++ +  +H++g vh Dl ++N+++ +++++  ++DfG + 
  MMETSP1061-20121228|4202_1 176 DHSHSYLAMEFIGGGELFEQLCEKGPfserdaaRFLRQFADGLRYIHSKGYVHADLKPENLLMGAEQTClkIVDFGGSV 254
                 55667899****99998887777666688889999****************************9888773369**9655 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.9e-05     0.019     230     301 ..     178     251 ..     173     262 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.9e-05
   TIGR01982 230 servltlewidgipvsdleklkeaGldlkalaenlvesf...lkqvlrdgfFHaDlHpGNilvakd.gkiialDfG 301
                 s++ l +e+i g ++  +e+l e+G   ++ a+++++ f   l+ +  +g+ HaDl p N+l+ ++   + ++DfG
  MMETSP1061-20121228|4202_1 178 SHSYLAMEFIGGGEL--FEQLCEKGPFSERDAARFLRQFadgLRYIHSKGYVHADLKPENLLMGAEqTCLKIVDFG 251
                 677899999999887..678899998888889999999855568999**************997662567899**9 PP

>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   3.3   0.00054      0.56     284     344 ..      33      96 ..      20     103 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00054
   TIGR02031 284 ppppPpPp...epesegeeee.deeeeeeeekeeeqlpeelildAveallpeeiLellqkaqagr 344
                 +pp P P+   +++  g++++ d++++++e+++e+  p+   ++A ++   + + +++++a ++r
  MMETSP1061-20121228|4202_1  33 KPPSPIPEeteQESARGGDDDdDDDDDDDEDDDEDTNPNHPSIAALHTPSSPPL-QISHNATKLR 96 
                 788999996643334455555055555555566668899989999888877664.4444444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.52
# Mc/sec: 1703.17
//
Query:       MMETSP1061-20121228|4210_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    5.4   8.8        1.8    4.9   6.1    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   6.1   0.00044       1.8     181     258 ..      27     111 ..      23     124 .. 0.45

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00044
   TIGR01651 181 ddqqafarvvrellaslelaeelgdd...eesedeedtdddqpredeqeeegee....eeegdeasaaeeaeaaeeeeesgeeea 258
                 ++q+ f   vr   +sl+  + ++ +   + +e+++d++d++ ++d++e+e+++      +  e+s++ +    ++++++ ++++
  MMETSP1061-20121228|4210_1  27 NNQSMFCSTVRSPSTSLQQQKLFCSSgvgHRDEKHDDEEDNEDNDDNDEQEASNfvtxTVAAAESSQSSKHAQQQQQHQHQQTNV 111
                 7888888888888777776655544432233333333333333333333333331000222233333333222233333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       273  (0.0665529); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 806.20
//
Query:       MMETSP1061-20121228|4213_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.4    1.7  21.0       0.75    5.1   0.0    2.2  2  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0   0.00018      0.75     993    1005 ..      71      83 ..       7     117 .. 0.83
   2 ?   -2.1  12.5     0.029   1.2e+02     966    1000 ..     131     165 ..     128     188 .. 0.48

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00018
   TIGR00927  993 eeeeeeeeeenee 1005
                  eee++eeeee+e+
  MMETSP1061-20121228|4213_1   71 EEEDDEEEEEDED 83  
                  2222222233333 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.029
   TIGR00927  966 dgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeee 1000
                  dg  ++dG + eee++++e  e+e  eee++++++
  MMETSP1061-20121228|4213_1  131 DGCRDADGEEEEEEDDDDEALEDEALEEEDDDDDD 165 
                  45556666555444444444344333332222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 966.35
//
Query:       MMETSP1061-20121228|4214_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 586.62
//
Query:       MMETSP1061-20121228|4215_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.17s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|4212_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-20   71.2   2.5      4e-19   66.9   1.3    2.8  3  TIGR00177 molyb_syn: molybdenum cofactor synthesis domain
      1e-17   61.8   1.1    2.9e-17   60.3   0.4    1.8  2  TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain
      3e-11   41.5   0.0    4.5e-09   34.3   0.0    2.2  2  TIGR00434 cysH: phosophoadenylyl-sulfate reductase
    7.4e-08   30.4   0.0    1.5e-07   29.4   0.0    1.4  1  TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase
    1.7e-06   25.8   0.0    3.6e-06   24.8   0.0    1.5  1  TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent
    1.7e-05   22.4   1.4    3.5e-05   21.4   1.0    1.5  1  TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B
     0.0019   15.7   0.0     0.0051   14.3   0.0    1.6  1  TIGR02039 CysD: sulfate adenylyltransferase, small subunit
     0.0041   13.6   0.0       0.02   11.3   0.0    1.9  2  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
  ------ inclusion threshold ------
        1.5    7.1   9.5        1.5    7.1   5.1    2.1  2  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR00177  molyb_syn: molybdenum cofactor synthesis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.5   6.8e+02      48      77 ..     135     166 ..     129     167 .. 0.88
   2 !   66.9   1.3   8.7e-22     4e-19       3      92 ..     410     496 ..     408     517 .. 0.90
   3 ?    1.5   0.0      0.13        58     124     146 ..     566     588 ..     528     624 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.5
   TIGR00177  48 Ddkeeikeilrkave..eadvvlttGGtGvge 77 
                 D+  e+ + l++ v+  ++d+v +  G+G+++
  MMETSP1061-20121228|4212_1 135 DEFSEVTAFLEDSVStyDLDMVAFEHGVGFAA 166
                 888999999999999899999*******9986 PP

  == domain 2    score: 66.9 bits;  conditional E-value: 8.7e-22
   TIGR00177   3 rvavisvgdelleegqieDtngallaalleeaglevkkvelgivpDdkeeikeilrkaveeadvvlttGGtGvgerDvtkealaelleke 92 
                 +v++++vgde+l+ g  +Dtn ++ a +l++ +l+ +  ++ +v+Dd+ ei+++++++ + +dvv+t+GG+G++++Dvt + +ae+l  e
  MMETSP1061-20121228|4212_1 410 TVGMLVVGDEILK-GMTTDTNTQTAARALRKECLTLS--RVVVVSDDVAEIATEINRLRSSVDVVITSGGVGPTHDDVTIKGVAEALGSE 496
                 589*********6.*********************96..59******************************************9998433 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.13
   TIGR00177 124 estlifnLPGspkavkvtfevlv 146
                 + ++if+LPG+p  +   +e+++
  MMETSP1061-20121228|4212_1 566 QCRNIFVLPGVPEFFSKKIENVA 588
                 55789******998887777765 PP

>> TIGR00200  cinA_nterm: competence/damage-inducible protein CinA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.4   6.3e-20   2.9e-17       3      96 ..     410     503 ..     408     516 .. 0.94
   2 ?   -1.1   0.0      0.28   1.3e+02     148     173 ..     570     594 ..     562     606 .. 0.79

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 6.3e-20
   TIGR00200   3 kaeiiavGdelLlGqivntnaqylakelaelGvplfyrtvvGDnperlkrviriaeeradvlifsGGLGPtkDDLtaetiAdalgepLvlneav 96 
                  + ++ vGde+L G   +tn+q  a+ l +  + l++  vv D+  ++ + i   +   dv+i sGG+GPt+DD+t + +A+alg  Lv ne++
  MMETSP1061-20121228|4212_1 410 TVGMLVVGDEILKGMTTDTNTQTAARALRKECLTLSRVVVVSDDVAEIATEINRLRSSVDVVITSGGVGPTHDDVTIKGVAEALGSELVYNEDM 503
                 688****************************************************************************************986 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.28
   TIGR00200 148 mlflPGvPselrvmvenealPlLrek 173
                 +++lPGvP  + + +en+a  +L ++
  MMETSP1061-20121228|4212_1 570 IFVLPGVPEFFSKKIENVAA-YLSSQ 594
                 7889*****99999999875.55555 PP

>> TIGR00434  cysH: phosophoadenylyl-sulfate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.011       4.8       3      43 ..      77     118 ..      75     140 .. 0.77
   2 !   34.3   0.0   9.9e-12   4.5e-09     146     192 ..     221     267 ..     192     275 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.011
   TIGR00434   3 eiiaWaldtfpdelvlatsf..Gieglvlldlvskikkdievi 43 
                 e +  a+  +++e v+ +sf  G +++v+l+lv  ++ +++  
  MMETSP1061-20121228|4212_1  77 ETLDHAYRLYGPESVI-CSFngGKDAVVILHLVRAVHAKYYNA 118
                 6677899999988776.45544899***********9998755 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 9.9e-12
   TIGR00434 146 llkvlPlidWtfkdvyqYleahnlpYnelfDqgYlsiGdahstrpvk 192
                  ++v+P+++W++  v+++l+  +lpY  l+DqgY+s+G ++ t p+ 
  MMETSP1061-20121228|4212_1 221 FMRVNPVLEWNYGLVWHFLRLFKLPYCSLYDQGYTSLGTTKDTLPCP 267
                 589**************************************999875 PP

>> TIGR02057  PAPS_reductase: phosphoadenosine phosphosulfate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   3.3e-10   1.5e-07     158     201 ..     222     265 ..     193     275 .. 0.91

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 3.3e-10
   TIGR02057 158 lkvlPlidWtskqvyeylaahkvkynplfDqGylsvGDehstrk 201
                 ++v+P+++W+   v+++l   k++y  l+DqGy+s+G ++ t +
  MMETSP1061-20121228|4212_1 222 MRVNPVLEWNYGLVWHFLRLFKLPYCSLYDQGYTSLGTTKDTLP 265
                 79***********************************9988865 PP

>> TIGR02055  APS_reductase: adenylylsulfate reductase, thioredoxin dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   7.9e-09   3.6e-06      99     170 ..     194     265 ..     185     277 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 7.9e-09
   TIGR02055  99 WitGlRReqsptRakvallelDearkslvkvnPladwtleevweyikknelpvnpLherGYpsiGCepCtrp 170
                 ++ G R ++  +  + ++    + +  +++vnP+ +w +  vw++++ ++lp+ +L+++GY s+G    t p
  MMETSP1061-20121228|4212_1 194 FVLGTRDSDPNAAGQDRFCPSSDWMPPFMRVNPVLEWNYGLVWHFLRLFKLPYCSLYDQGYTSLGTTKDTLP 265
                 56666666666666666655555555589************************************8866655 PP

>> TIGR02667  moaB_proteo: molybdenum cofactor biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   1.0   7.6e-08   3.5e-05       8      87 ..     412     491 ..     407     503 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 7.6e-08
   TIGR02667   8 avltvsds..rteeddtsGqvlverlkeaGhelaeraivkddlyqiraqvseWiadeevdvilitGGtGltgrdvtpealep 87 
                  +l v d   +   +dt  q+ + +l+++  +l++ ++v+dd+++i++ +++    ++vdv++++GG G t  dvt + ++ 
  MMETSP1061-20121228|4212_1 412 GMLVVGDEilKGMTTDTNTQTAARALRKECLTLSRVVVVSDDVAEIATEINRL--RSSVDVVITSGGVGPTHDDVTIKGVAE 491
                 566676653356789***********************************985..678******************988764 PP

>> TIGR02039  CysD: sulfate adenylyltransferase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.1e-05    0.0051      25      98 ..      94     174 ..      88     193 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-05
   TIGR02039  25 lysiGkdssvllhlar..ka.fyP..gklPfp..llhvdtgwkfreviafrdelvakldlelivhsneegiaeginplteg 98 
                  + +Gkd+ v+lhl r   a +y   g+ P     ++ +   +f ev af ++ v+++dl++++ ++  g a+g+n l+e 
  MMETSP1061-20121228|4212_1  94 SFNGGKDAVVILHLVRavHAkYYNatGTTPIRprAVYFNNHDEFSEVTAFLEDSVSTYDLDMVAFEHGVGFAAGLNILVEH 174
                 5899**********65223324541255665322578889999*******************************9988775 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.23   1.1e+02     101     131 ..      73     104 ..      46     117 .. 0.77
   2 !   11.3   0.0   4.3e-05      0.02     255     296 ..     222     263 ..     210     280 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.23
   TIGR00424 101 aspleimdkalekfgndiai.afsgaedvali 131
                  s le +d+a   +g +  i +f g +d  +i
  MMETSP1061-20121228|4212_1  73 QSALETLDHAYRLYGPESVIcSFNGGKDAVVI 104
                 478************87655279999998776 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 4.3e-05
   TIGR00424 255 vkwnpvanvegkdvwnflrtmdvpvntlhaqgyvsigcepct 296
                 ++ npv + +   vw flr + +p  +l+ qgy s+g    t
  MMETSP1061-20121228|4212_1 222 MRVNPVLEWNYGLVWHFLRLFKLPYCSLYDQGYTSLGTTKDT 263
                 5789999999999************************75433 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   5.1    0.0033       1.5      56      96 ..     363     403 ..     355     412 .. 0.49
   2 ?   -3.3   0.0       5.6   2.5e+03      25      45 ..     471     493 ..     464     496 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0033
   TIGR03685  56 kaaaapvaaaaaaaaaaeaaeeekeeeeeeeeekeeeeeea 96 
                 +a+ a+v+ aaaaa ++++++++++++e+e+ +++e+++++
  MMETSP1061-20121228|4212_1 363 DATNAKVTQAAAAADNSSNDNDNDNKNENENGDDDEKDASE 403
                 45555555555555444444444444333333333333333 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 5.6
   TIGR03685  25 vleaaGv..evdearvKalvaaL 45 
                 v++  Gv  + d++ +K +  aL
  MMETSP1061-20121228|4212_1 471 VITSGGVgpTHDDVTIKGVAEAL 493
                 56666662256889999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.39
# Mc/sec: 2453.64
//
Query:       MMETSP1061-20121228|4216_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-16   57.9   0.0    3.1e-16   57.2   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    4.8e-15   53.3   0.0    7.5e-15   52.7   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    1.8e-14   51.6   0.0    2.9e-14   51.0   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    2.4e-14   51.5   0.0      4e-14   50.8   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    1.4e-07   29.0   0.0    2.2e-07   28.3   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    1.3e-05   23.3   0.0    5.8e-05   21.2   0.0    2.0  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00011   19.5   0.0    0.00025   18.4   0.0    1.5  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    0.00013   19.4   0.0     0.0002   18.8   0.0    1.2  1  TIGR02081 metW: methionine biosynthesis protein MetW
    0.00027   18.2   0.0    0.00085   16.6   0.0    1.7  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
    0.00091   17.5   0.1     0.0041   15.4   0.0    2.0  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family
     0.0012   15.5   0.0     0.0018   15.0   0.0    1.2  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
     0.0022   15.2   0.0     0.0039   14.4   0.0    1.3  1  TIGR00477 tehB: tellurite resistance protein TehB
     0.0089   13.7   0.0      0.013   13.1   0.0    1.2  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
  ------ inclusion threshold ------
      0.035   11.4   0.0      0.077   10.3   0.0    1.7  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   1.1e-18   3.1e-16      32     155 ..     191     316 ..     176     324 .. 0.86

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 1.1e-18
   TIGR01983  32 yikekikkklkknekkleglkvlDvGcGgGllseslarl.gae..vtgiDlseelievAklhakkdplkkieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilflstin 155
                 +i+e +k    ++ k+ ++ kvlDvGcG G  s  lar  g e  vt+i ls +++e A++ a +++  ++++ ++++ e+ +  ++sfD+v a E  EH++d ++ + +++++lkpgg+ +++t  
  MMETSP1061-20121228|4216_1 191 FIDEMMKF-GGIDPKTDKKAKVLDVGCGFGGTSRYLARAlGPEseVTAITLSPKQVERAQELAIEQNTPNVKFMVEDALEMPSFPDNSFDIVWACESGEHMPDKKKYIDQMMRVLKPGGKFVMATWC 316
                 55555443.34555677899*****************97333245***********************9***************9**************************************9965 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.0   2.6e-17   7.5e-15      38     147 ..     206     318 ..     191     360 .. 0.92

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 2.6e-17
   TIGR01934  38 ekeekvlDvatGtGdlaielakkae..akvtgvDlseemLevakkkakekeeanvefieadaeeLp.fednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilefskp 147
                  k++kvlDv +G G  +  la++ +   +vt++ ls++ +e a++ a e+++ nv+f+++da e+p f+dnsfd+v        + d++k +++++RVlkpgg++v+    ++
  MMETSP1061-20121228|4216_1 206 DKKAKVLDVGCGFGGTSRYLARALGpeSEVTAITLSPKQVERAQELAIEQNTPNVKFMVEDALEMPsFPDNSFDIVWACESGEHMPDKKKYIDQMMRVLKPGGKFVMATWCQR 318
                 4899******************99999*********************99999**********************988877799*********************98766665 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   9.9e-17   2.9e-14      44     151 ..     206     314 ..     188     338 .. 0.93

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 9.9e-17
   TIGR02752  44 qkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklenvelvhgnamelp.yednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvcle 151
                 +k +k+ldv cg +  +  la+a+g+e ev+ + +s + ++ ++e   +++  nv+++  +a+e+p ++dnsfd v        +pd  + + +m+rv+kpggk v   
  MMETSP1061-20121228|4216_1 206 DKKAKVLDVGCGFGGTSRYLARALGPESEVTAITLSPKQVERAQELAIEQNTPNVKFMVEDALEMPsFPDNSFDIVWACESGEHMPDKKKYIDQMMRVLKPGGKFVMAT 314
                 567899***********************************************************989***********999**********************99755 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   1.4e-16     4e-14      32     137 ..     205     317 ..     179     320 .. 0.84

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 1.4e-16
   TIGR02072  32 kfepakvLdiGcGtGiltrallkr.fpqaelialDiseemleqakkkls.....nvqficgdieklp.lekksfDlivSnlalQWlddlsevlaelarvlkpgGllafstfgk 137
                 + ++akvLd+GcG G ++r l++   p++e++a+ +s+++ e+a++        nv+f+ +d+ ++p + ++sfD+++++ +   + d+++ ++++ rvlkpgG ++++t ++
  MMETSP1061-20121228|4216_1 205 TDKKAKVLDVGCGFGGTSRYLARAlGPESEVTAITLSPKQVERAQELAIeqntpNVKFMVEDALEMPsFPDNSFDIVWACESGEHMPDKKKYIDQMMRVLKPGGKFVMATWCQ 317
                 56789**************99765279999**************9877678899********98887367888************************************9887 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   7.6e-10   2.2e-07      53     135 ..     206     294 ..     182     312 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 7.6e-10
   TIGR02021  53 lkGkkvlDAGCGtGllsielAkr.G..aivkavDiseklvelarkraekedeaenveFevndlesl...e.gkfDavvalDvlihYpaed 135
                  k  kvlD GCG G  s  lA+  G   +v+a+ +s+k ve a++ a +++ + nv+F v+d +++     + fD+v a ++  h p+++
  MMETSP1061-20121228|4216_1 206 DKKAKVLDVGCGFGGTSRYLARAlGpeSEVTAITLSPKQVERAQELAIEQN-TPNVKFMVEDALEMpsfPdNSFDIVWACESGEHMPDKK 294
                 46679****************86443379***************9999888.59*******965442224599******99999999875 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         2     6e+02      85     100 ..      75      90 ..      62     104 .. 0.75
   2 !   21.2   0.0     2e-07   5.8e-05      19     121 ..     207     313 ..     201     315 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2
   TIGR02469  85 sleeadavfvgGsgkk 100
                   +  +av+v Gs+  
  MMETSP1061-20121228|4216_1  75 RSSSTNAVVVTGSSSS 90 
                 2677889999998765 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 2e-07
   TIGR02469  19 kgdvllDiGaGtGsvtieaarlvpk.grvyaierneealelieeNlrrfgvsnieivegdapkaeedsleeadavfvgGsgkkl...keileaverrlrpggrivln 121
                 k++++lD+G+G G  +  +ar+++   +v+ai  +++++e  +e + + +  n++ + +da +++   ++ +d+v    sg+++   k+ +++++r+l+pgg  v+ 
  MMETSP1061-20121228|4216_1 207 KKAKVLDVGCGFGGTSRYLARALGPeSEVTAITLSPKQVERAQELAIEQNTPNVKFMVEDALEMPSFPDNSFDIVWACESGEHMpdkKKYIDQMMRVLKPGGKFVMA 313
                 5679*****************99988******************999999*******999997777768899*99988777765332589999*********99985 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.7e-07   0.00025      85     160 ..     204     281 ..     189     283 .. 0.86
   2 ?   -3.6   0.0       4.6   1.3e+03     199     217 ..     294     312 ..     291     322 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 8.7e-07
   TIGR03534  85 kkkeklkvlDlgtGsGaIalalakel.pdakviavDiseeAlkvarkNakrlglkeveflksdlleal.eekgkfdli 160
                 k+++k+kvlD+g+G G     la  l p+ +v+a+ +s++ ++ a++ a +++  +v+f+  d le    ++++fd++
  MMETSP1061-20121228|4216_1 204 KTDKKAKVLDVGCGFGGTSRYLARALgPESEVTAITLSPKQVERAQELAIEQNTPNVKFMVEDALEMPsFPDNSFDIV 281
                 555678*****************99889**********************999999********97655689999987 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 4.6
   TIGR03534 199 rriaeeaakllkeggllll 217
                 ++ ++++ ++lk+gg++++
  MMETSP1061-20121228|4216_1 294 KKYIDQMMRVLKPGGKFVM 312
                 5678999999***999987 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0     7e-07    0.0002      12     102 ..     206     304 ..     198     310 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 7e-07
   TIGR02081  12 pagsrvLDlGcGdGe....LLallrdekqveg.....aGleideenvlacvarGveviqqdldegLeafedksfDvvvlsqtlqavrnteeiLdellRvg 102
                 +++++vLD+GcG G     L ++l  e +v++     + +e ++e  ++  +  v+ + +d+  +++ f+d+sfD+v   ++   +   ++ +d+++Rv 
  MMETSP1061-20121228|4216_1 206 DKKAKVLDVGCGFGGtsryLARALGPESEVTAitlspKQVERAQELAIEQNTPNVKFMVEDA-LEMPSFPDNSFDIVWACESGEHMPDKKKYIDQMMRVL 304
                 57899*******98522325667777888888888888899999999999999999988886.5689*******************************95 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.9e-06   0.00085      15     132 ..     206     314 ..     191     323 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.9e-06
   TIGR00091  15 nkkplvleiGcGkGrfliklAkq.npeknflGiEiekpivlkainkaeklglkNlkvlcgdakkllekfipkgslskvflnFpdPwfkkrhekrRivqpkflkevaevLkkgGvielkt 132
                  kk  vl++GcG+G     lA++  pe ++  i + ++ v +a + a +++  N+k +  da  l   ++p++s   v  + +  +   ++        k++ ++++vLk+gG + ++t
  MMETSP1061-20121228|4216_1 206 DKKAKVLDVGCGFGGTSRYLARAlGPESEVTAITLSPKQVERAQELAIEQNTPNVKFMVEDA--LEMPSFPDNSFDIVWACESGEHMPDKK--------KYIDQMMRVLKPGGKFVMAT 314
                 577789***************9845*************************************..777789999999999999999988888........79999999999999998887 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1       1.7   4.9e+02      69     102 ..      88     126 ..      70     133 .. 0.51
   2 !   15.4   0.0   1.4e-05    0.0041       2      52 ..     211     262 ..     210     279 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 1.7
   TIGR01444  69 sddatgnsslaadselaees.....eieVevvtlddlve 102
                 s++++++ss++ +  ++ ++     +++V++v l+  ++
  MMETSP1061-20121228|4216_1  88 SSSSSSSSSTQLSMVASPQTivpkiAVKVAAVALSAALA 126
                 223333333333332222225575567777777776665 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.4e-05
   TIGR01444   2 viDiGAniGdvslvfaravae.grviafEPlpdllekleenvklnnlknvkl 52 
                 v+D+G+  G +s+++ara ++ ++v a+  +p+ +e+++e + ++n +nvk+
  MMETSP1061-20121228|4216_1 211 VLDVGCGFGGTSRYLARALGPeSEVTAITLSPKQVERAQELAIEQNTPNVKF 262
                 89***************99999******************999999988764 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.2e-06    0.0018     293     351 ..     207     268 ..     190     282 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.2e-06
   TIGR00479 293 geekvvDaycGvGtftlplAkqa...ksvvgvevvkesvekakrnAelngianveflagele 351
                 ++ kv+D+ cG G  + +lA+      +v+++   ++ ve+a+  A  ++  nv+f+++++ 
  MMETSP1061-20121228|4216_1 207 KKAKVLDVGCGFGGTSRYLARALgpeSEVTAITLSPKQVERAQELAIEQNTPNVKFMVEDAL 268
                 5789****************98644479*****************************99874 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.3e-05    0.0039      73     206 ..     207     341 ..     201     360 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.3e-05
   TIGR00477  73 apcktldlGcGqGrnslylsla.G..ydvdavdkneasiasveeikekenld.lrtavydinaa.al.dedydfilstvvllfleaervpeiianmkehtkpGGynlivaamdtadypctlpfsftfkedelreyykdwe 206
                 + +k+ld+GcG G  s yl+ a G   +v+a+  +++ +   +e++ ++n + ++  v d   + ++ d+ +d + +      +  ++  + i +m +  kpGG  ++ +  + +d   ++pf    k  +l+  y++w 
  MMETSP1061-20121228|4216_1 207 KKAKVLDVGCGFGGTSRYLARAlGpeSEVTAITLSPKQVERAQELAIEQNTPnVKFMVEDALEMpSFpDNSFDIVWACESGEHMPDKK--KYIDQMMRVLKPGGKFVMATWCQRDD--SKVPFDKRDK-RDLQYLYEEWT 341
                 679****************9643533689**************999888876588888774433134245566655554444333332..57999999999999877777777776..4677776544.56888888885 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   4.6e-05     0.013      76     177 ..     206     314 ..     189     350 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.6e-05
   TIGR00080  76 kagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLeldnvivkegDGrk.GfeekaPydailvtaaskeiPk......aLidqLeeGGklvlPv 177
                 +++akvL++G+G G  +  la+ +g +  v +i   ++ ve+a+    + +  nv+  + D  +    +   +d +    +++++P+       +++ L+ GGk+v+  
  MMETSP1061-20121228|4216_1 206 DKKAKVLDVGCGFGGTSRYLARALGPESEVTAITLSPKQVERAQELAIEQNTPNVKFMVEDALEmPSFPDNSFDIVWACESGEHMPDkkkyidQMMRVLKPGGKFVMAT 314
                 5789*********************************999999988888999999999999865223355678888888888888852212213455578888888865 PP

>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00026     0.077      33      69 ..     208     244 ..     172     317 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00026
   TIGR00438  33 GklvldlGaaPGGWsqvavekvgekGlviavdlqpvk 69 
                   +vld+G+  GG s++ ++ +g +  v a+ l p +
  MMETSP1061-20121228|4216_1 208 KAKVLDVGCGFGGTSRYLARALGPESEVTAITLSPKQ 244
                 468****************************998744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.27u 0.10s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1537.49
//
Query:       MMETSP1061-20121228|4219_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 1007.03
//
Query:       MMETSP1061-20121228|4221_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-17   59.7   0.2    2.6e-16   57.8   0.1    2.1  1  TIGR00177 molyb_syn: molybdenum cofactor synthesis domain


Domain annotation for each model (and alignments):
>> TIGR00177  molyb_syn: molybdenum cofactor synthesis domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.1   6.3e-20   2.6e-16       2     147 ..     196     367 ..     195     368 .. 0.88

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 6.3e-20
   TIGR00177   2 lrvavisvgdelle................................egqieDtngallaalleeaglevkkvelgivpDd.keeikeilrkaveeadvvlttGGtGvgerDvtkealaellekelegfeelfrklslevptvlsrpgkpavag........vrestlifnLPGspkavkvtfevlvk 147
                 ++v+v+s+g+el+                                  ++ + + g ++  +++e++      +lg+v+Dd  ++++e++++a++++d+ +ttGG+++ge D+++++l e +   l+ f           +++ ++pgkp++++        + + +l+f+ PG+p ++ v+ + lv 
  MMETSP1061-20121228|4221_1 196 IKVGVLSTGNELIPxepkhkrkrkrkrerkrkrkhnvaakrqgensRCEPTGSAGIAVDRQVSEHLRAD---DLGMVRDDdAKAMEETVESALDRCDIMITTGGVSMGETDIVERVLVEKCGGTLH-F-----------GRMHMKPGKPTTFFslprkvdgEDRTKLVFAQPGNPCSAAVCTQLLVG 367
                 799999999999999999999999999999999999999999987767777778888888999987554...4888886516789**********************************9988888.3...........3499**********999999999999****************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.48
# Mc/sec: 1891.84
//
Query:       MMETSP1061-20121228|4226_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.30
# Mc/sec: 299.18
//
Query:       MMETSP1061-20121228|4223_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1851.85
//
Query:       MMETSP1061-20121228|4224_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       356  (0.0867869); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.11s 00:00:00.47 Elapsed: 00:00:00.61
# Mc/sec: 1542.76
//
Query:       MMETSP1061-20121228|4222_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 2078.83
//
Query:       MMETSP1061-20121228|4228_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-06   25.4   0.0      0.027   12.4   0.0    2.4  2  TIGR00739 yajC: preprotein translocase, YajC subunit
  ------ inclusion threshold ------
      0.031   10.1   0.0      0.043    9.7   0.0    1.1  1  TIGR03432 yjhG_yagF: putative dehydratase, YjhG/YagF family
      0.045   11.9   1.0        2.9    6.1   0.0    2.5  3  TIGR02976 phageshock_pspB: phage shock protein B


Domain annotation for each model (and alignments):
>> TIGR00739  yajC: preprotein translocase, YajC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     2e-05     0.027      13      55 ..     138     180 ..     129     186 .. 0.86
   2 !   10.4   0.1   8.4e-05      0.12       7      42 ..     213     251 ..     208     252 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2e-05
   TIGR00739  13 iliFyFliirpqrkrrkahkkliesLkkGdkVltigGligtvt 55 
                 + ++ F   r+q+++r+a+    e++++ + Vl  gG++ ++ 
  MMETSP1061-20121228|4228_1 138 VCLLEFWTHRRQKQQREARLRAEEEVTPDETVLDPGGVWKKIR 180
                 445668899******************************9885 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 8.4e-05
   TIGR00739   7 lplvliiliFyFliir...pqrkrrkahkkliesLkkGd 42 
                 +p ++++li+ +l++r    q+ +++ +++l+e+L +G+
  MMETSP1061-20121228|4228_1 213 VPYLVAFLILSYLVWRfeqTQQLQEQLREQLQEQLLQGT 251
                 67899***********33334445677788888888875 PP

>> TIGR03432  yjhG_yagF: putative dehydratase, YjhG/YagF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   3.1e-05     0.043     384     421 ..     137     174 ..     125     182 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 3.1e-05
   TIGR03432 384 ldelldwwekserreslkkrlrerdgvdpddvilspak 421
                 l  ll++w +  ++++   rlr++++v pd+ +l+p  
  MMETSP1061-20121228|4228_1 137 LVCLLEFWTHRRQKQQREARLRAEEEVTPDETVLDPGG 174
                 45689*****99999999******************75 PP

>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.1         3   4.1e+03      38      51 ..      41      54 ..      35      54 .. 0.76
   2 ?    6.1   0.0    0.0021       2.9      14      41 ..     135     162 ..     129     164 .. 0.84
   3 ?    3.8   0.0     0.011        15       8      44 ..     213     247 ..     206     252 .. 0.77

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 3
   TIGR02976 38 tddlalLeelseka 51
                ++++ ++ee +e+a
  MMETSP1061-20121228|4228_1 41 DEEQHAIEETYEDA 54
                67888999988876 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0021
   TIGR02976  14 vifvallwlllhyrskrktaaslstddl 41 
                 +  v ll  + h+r+k+++ a l  +++
  MMETSP1061-20121228|4228_1 135 LCLVCLLEFWTHRRQKQQREARLRAEEE 162
                 45679999*************9988775 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.011
   TIGR02976   8 iPlivfvifvallwlllhyrskrktaaslstddlalL 44 
                 +P +  v+f+ l +l+ +  + ++  ++l ++ +++L
  MMETSP1061-20121228|4228_1 213 VPYL--VAFLILSYLVWRFEQTQQLQEQLREQLQEQL 247
                 5555..8888889999999988999999999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      199  (0.0485129); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.47
# Mc/sec: 749.81
//
Query:       MMETSP1061-20121228|4230_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.3   0.1      0.048   11.0   0.0    1.6  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.2e-05     0.048      95     128 ..     115     148 ..      87     157 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.2e-05
   TIGR02521  95 kpnngdvlNNYGtFLcqqkkyeeAeqqfeaAied 128
                 +p+ ++ +  YG+FL+++ +  +A   f +A++ 
  MMETSP1061-20121228|4230_1 115 HPDVANTYHFYGWFLYERSRHAHALVCFLQALKI 148
                 34444555568********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 2191.96
//
Query:       MMETSP1061-20121228|4235_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 361.54
//
Query:       MMETSP1061-20121228|4234_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1157.44
//
Query:       MMETSP1061-20121228|4241_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 521.01
//
Query:       MMETSP1061-20121228|4238_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1867.65
//
Query:       MMETSP1061-20121228|4242_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1928.33
//
Query:       MMETSP1061-20121228|4237_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1932.17
//
Query:       MMETSP1061-20121228|4244_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 1179.90
//
Query:       MMETSP1061-20121228|4247_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-05   20.4   0.3       0.38    7.9   0.0    3.1  4  TIGR02852 spore_dpaB: dipicolinic acid synthetase, B subunit
  ------ inclusion threshold ------
      0.012   12.6   0.4      0.025   11.6   0.3    1.4  1  TIGR03275 methan_mark_8: putative methanogenesis marker protein 8
      0.015   12.1   0.5       0.25    8.1   0.1    2.4  4  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
       0.12   10.7   3.6        2.8    6.3   0.2    3.1  3  TIGR02863 spore_sspJ: small, acid-soluble spore protein, SspJ family


Domain annotation for each model (and alignments):
>> TIGR02852  spore_dpaB: dipicolinic acid synthetase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00039       0.4     101     130 ..      19      48 ..      11      54 .. 0.81
   2 ?    1.2   0.0     0.043        44     109     128 ..      52      73 ..      44      84 .. 0.71
   3 ?    2.1   0.0     0.023        23     105     129 ..      73      97 ..      54     103 .. 0.61
   4 !    7.9   0.0   0.00037      0.38     100     128 ..      93     122 ..      87     128 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00039
   TIGR02852 101 tdspvlmaakatlrnnkPvvlaistndalG 130
                 +   vl +a  +lrn+k vvla   n +  
  MMETSP1061-20121228|4247_1  19 NKGWVLRCASEELRNDKGVVLAAVKNAGRA 48 
                 45569999**************99997755 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.043
   TIGR02852 109 akatlrnnkPvvlaistn..da 128
                 a  + rn+k vv+a   n  da
  MMETSP1061-20121228|4247_1  52 ASEECRNDKEVVMAAVNNygDA 73 
                 5567899999999887773344 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.023
   TIGR02852 105 vlmaakatlrnnkPvvlaistndal 129
                  l  a  +l+ +k vv+a   nd++
  MMETSP1061-20121228|4247_1  73 ALKHASEELQKDKDVVIAAVGNDGF 97 
                 3444556677777777777777765 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.00037
   TIGR02852 100 itdspvlma.akatlrnnkPvvlaistnda 128
                  +d  vl+  a  + rnnk vvla  +nd+
  MMETSP1061-20121228|4247_1  93 GNDGFVLLEyASEEWRNNKDVVLAAVSNDG 122
                 567777765377889**************8 PP

>> TIGR03275  methan_mark_8: putative methanogenesis marker protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3   2.4e-05     0.025     134     221 ..      31     120 ..      26     127 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.4e-05
   TIGR03275 134 ieeeggivldketakidqieGvkkaielgykkiavtvadaedakeirelekeldldvliiavhvtGideed..aeelvkyaDivtsCask 221
                 + +++g+vl + +     +e   +  + +++ +  +v++  da +  + e + d+dv+i+av   G    +  +ee  ++ D+v +  s+
  MMETSP1061-20121228|4247_1  31 LRNDKGVVLAAVKNAGRALEYASEECRNDKEVVMAAVNNYGDALKHASEELQKDKDVVIAAVGNDGFVLLEyaSEEWRNNKDVVLAAVSN 120
                 666777888544444444444444455667778888999999998888899999999999999999765442268889999999988775 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.1   0.00024      0.25      65      98 ..      32      65 ..      19      69 .. 0.81
   2 ?    2.5   0.0     0.012        13      67      91 ..      59      83 ..      53      99 .. 0.77
   3 ?   -0.0   0.0     0.073        74      63      87 ..      80     105 ..      71     121 .. 0.73
   4 ?   -0.9   0.0      0.13   1.3e+02      66      85 ..     109     128 ..      98     129 .] 0.82

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00024
   TIGR02991 65 eraaGvvaastGnhGralayaakkegvravicms 98
                ++ +Gvv a+  n Gral ya+++      + m+
  MMETSP1061-20121228|4247_1 32 RNDKGVVLAAVKNAGRALEYASEECRNDKEVVMA 65
                4568*****************9987776666665 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.012
   TIGR02991 67 aaGvvaastGnhGralayaakkegv 91
                 + vv a+  n+G al +a+++ + 
  MMETSP1061-20121228|4247_1 59 DKEVVMAAVNNYGDALKHASEELQK 83
                567999999999***9999987654 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.073
   TIGR02991  63 daeraaGvvaastGnhGrala.yaak 87 
                 + ++ + vv a+ Gn G  l  ya++
  MMETSP1061-20121228|4247_1  80 ELQKDKDVVIAAVGNDGFVLLeYASE 105
                 45788899999999999876414444 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 0.13
   TIGR02991  66 raaGvvaastGnhGralaya 85 
                 +++ vv a+  n Gr l ya
  MMETSP1061-20121228|4247_1 109 NNKDVVLAAVSNDGRLLQYA 128
                 4567999999******9998 PP

>> TIGR02863  spore_sspJ: small, acid-soluble spore protein, SspJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.013        14      15      31 ..      33      49 ..      27      53 .. 0.89
   2 ?    6.3   0.2    0.0027       2.8      15      33 ..      58      76 ..      52      87 .. 0.80
   3 ?   -0.5   0.0      0.34   3.5e+02      14      28 ..      82      96 ..      77     101 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.013
   TIGR02863 15 KeknvvrGALEDAGsAL 31
                 +k vv  A+ +AG AL
  MMETSP1061-20121228|4247_1 33 NDKGVVLAAVKNAGRAL 49
                5899************9 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0027
   TIGR02863 15 KeknvvrGALEDAGsALKd 33
                 +k vv  A+++ G+ALK 
  MMETSP1061-20121228|4247_1 58 NDKEVVMAAVNNYGDALKH 76
                699***************7 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.34
   TIGR02863 14 EKeknvvrGALEDAG 28
                 K+k+vv  A+ + G
  MMETSP1061-20121228|4247_1 82 QKDKDVVIAAVGNDG 96
                599999988876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                      224  (0.0546075); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 486.47
//
Query:       MMETSP1061-20121228|4249_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 385.41
//
Query:       MMETSP1061-20121228|4253_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   15.1   0.7     0.0046   14.7   0.5    1.2  1  TIGR03093 SASP_sspL: small, acid-soluble spore protein L


Domain annotation for each model (and alignments):
>> TIGR03093  SASP_sspL: small, acid-soluble spore protein L
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.5   1.1e-06    0.0046      12      35 ..       7      29 ..       3      30 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.1e-06
   TIGR03093 12 GdiqednahqdPkseLEnrAKKsN 35
                Gd+ ++n   dP+s LE   K sN
  MMETSP1061-20121228|4253_1  7 GDG-DGNGDGDPESSLEPSGKESN 29
                788.**************999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|4245_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.079   11.4   2.4          6    5.3   0.1    2.9  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0    0.0033        13      78     103 ..     265     290 ..     263     292 .. 0.89
   2 ?    5.3   0.1    0.0015         6      45      65 ..     313     333 ..     312     345 .. 0.88
   3 ?   -0.7   0.1      0.11   4.6e+02      83     105 ..     363     385 ..     357     400 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0033
   TIGR02795  78 allklgeslqelgqkekAkktlqevi 103
                 a l  g++l++lg++e+A+ t+ +v+
  MMETSP1061-20121228|4245_1 265 AYLHKGNALAALGREEEARDTYLKVM 290
                 678899***************99986 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0015
   TIGR02795  45 lGealyakkkykdAakaflev 65 
                 +G+++ ++++y++A ++++++
  MMETSP1061-20121228|4245_1 313 IGNTYSRQGDYEKANEQYAAA 333
                 699***************976 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.11
   TIGR02795  83 geslqelgqkekAkktlqevikr 105
                 + +l++ g++++ k++l++vi+ 
  MMETSP1061-20121228|4245_1 363 AFALKKAGRENEGKEVLKDVINM 385
                 667889999999******99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.09s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 1469.72
//
Query:       MMETSP1061-20121228|4246_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.45
# Mc/sec: 1795.05
//
Query:       MMETSP1061-20121228|4248_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.37
# Mc/sec: 1423.34
//
Query:       MMETSP1061-20121228|4256_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1812.91
//
Query:       MMETSP1061-20121228|4260_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 437.65
//
Query:       MMETSP1061-20121228|4255_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-11   41.2   0.1    2.8e-11   41.1   0.1    1.1  1  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III
    8.7e-08   29.8   0.5    4.8e-07   27.4   0.1    1.9  2  TIGR03045 PS_II_C550: cytochrome c-550
    5.9e-06   23.8   0.6    4.5e-05   21.0   0.3    2.2  1  TIGR03046 PS_II_psbV2: photosystem II cytochrome PsbV2
     0.0013   16.6   0.5       0.12   10.3   0.2    2.4  2  TIGR02603 CxxCH_TIGR02603: putative heme-binding domain


Domain annotation for each model (and alignments):
>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.1   2.8e-14   2.8e-11     195     282 ..      38     126 ..       6     129 .. 0.72

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 2.8e-14
   TIGR00782 195 kkpkdealaakGkelFadnCvsChgedgkG.lqelgapnltddvwlyGgd.kktivttikkGrigvmPawkkrlseaqikalaayvhslg 282
                  +p+ +a + +G+ +F++nC++Ch+   +  + e+  ++ + d +l Gg  ++++ t++++G+   mPa++ rls+++i  +aayv + +
  MMETSP1061-20121228|4255_1  38 VSPALAADVGNGETVFNSNCAACHAGGQNViMPEKTLEKEALDQYLTGGRsEASVRTQVTNGKN-AMPAFGGRLSDEEIADVAAYVIQTS 126
                 44666777889*************86555414455545556666777777588999999**986.6********************8755 PP

>> TIGR03045  PS_II_C550: cytochrome c-550
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   4.7e-10   4.8e-07      15      85 ..       5      80 ..       1      91 [. 0.70
   2 ?    0.4   0.0     0.095        97     132     146 ..     110     124 ..     102     128 .. 0.87

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 4.7e-10
   TIGR03045 15 llqlavspasaaeldeetrtvkl..dseGetvvlt...eeqvkkgkrlfnsaCatChvgGitktnpnvgLdleaLe 85
                ++++ +++asa +l+++  t ++   +    v ++    ++v +g+ +fns+Ca+Ch+gG+    p+ +L+ eaL+
  MMETSP1061-20121228|4255_1  5 IFATLLASASAFSLNKADMTKAAaaGAVAFGVAVSpalAADVGNGETVFNSNCAACHAGGQNVIMPEKTLEKEALD 80
                4444555666666665555443300333344555522246899******************************997 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.095
   TIGR03045 132 LtdedLkliagyiLv 146
                 L+de++  +a+y++ 
  MMETSP1061-20121228|4255_1 110 LSDEEIADVAAYVIQ 124
                 89**********975 PP

>> TIGR03046  PS_II_psbV2: photosystem II cytochrome PsbV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.3   4.4e-08   4.5e-05      54      89 ..      43      78 ..      37     130 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 4.4e-08
   TIGR03046 54 aedlteGkklfesncknchvGGatlpnPkvslslkd 89
                a d+ +G   f+snc  ch GG ++  P+ +l  + 
  MMETSP1061-20121228|4255_1 43 AADVGNGETVFNSNCAACHAGGQNVIMPEKTLEKEA 78
                678999**********************98886655 PP

>> TIGR02603  CxxCH_TIGR02603: putative heme-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.2   0.00011      0.12       1      19 [.      44      62 ..      44      70 .. 0.90
   2 !    4.3   0.0    0.0077       7.9     110     132 ..     102     123 ..      72     125 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00011
   TIGR02603  1 gdaekGkavfakaCvvCHr 19
                +d+  G++vf+++C++CH 
  MMETSP1061-20121228|4255_1 44 ADVGNGETVFNSNCAACHA 62
                6999**************6 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0077
   TIGR02603 110 lMpegleaglsdedladLvayLk 132
                  Mp +   +lsde++ad+ ay+ 
  MMETSP1061-20121228|4255_1 102 AMP-AFGGRLSDEEIADVAAYVI 123
                 455.56789************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.16u 0.19s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 665.02
//
Query:       MMETSP1061-20121228|4262_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 211.18
//
Query:       MMETSP1061-20121228|4257_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.38
# Mc/sec: 1424.09
//
Query:       MMETSP1061-20121228|4264_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-40  134.8   1.9    3.9e-40  134.7   1.3    1.0  1  TIGR01160 SUI1_MOF2: translation initiation factor SUI1
    5.8e-10   37.0   0.5      7e-10   36.8   0.4    1.1  1  TIGR01158 SUI1_rel: putative translation initiation factor SUI1
    2.1e-07   28.9   0.7    2.5e-07   28.7   0.5    1.0  1  TIGR01159 DRP1: density-regulated protein DRP1
  ------ inclusion threshold ------
      0.032   11.0   0.1      0.037   10.8   0.1    1.0  1  TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ


Domain annotation for each model (and alignments):
>> TIGR01160  SUI1_MOF2: translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.7   1.3   3.8e-43   3.9e-40       4     110 .]       5     109 .]       2     109 .] 0.93

  Alignments for each domain:
  == domain 1    score: 134.7 bits;  conditional E-value: 3.8e-43
   TIGR01160   4 nlksfdpfadaskedsvlagteeyihiriqqrnGrktlttvqGlkkeydlkkllkalkkelacnGtvvedaelGeviqlqGdqrkkvkeflieeglvkkdqikihGf 110
                 ++++fd f da+++ +  +++ee +h+r+qqrnGrk +ttv Gl++++d k++ ka+kk+++cnG+v +d ++Geviql Gdqr +vkefl+++++++++ i +hGf
  MMETSP1061-20121228|4264_1   5 QFNTFDAFEDAEDKGA--GTSEEKVHVRVQQRNGRKCITTVAGLADDLDIKRICKAFKKNFNCNGAVQKDEDVGEVIQLSGDQRTNVKEFLVDQEICHGESIVLHGF 109
                 5789999998765543..577899**********************************************************************************8 PP

>> TIGR01158  SUI1_rel: putative translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.4   6.8e-13     7e-10      20      94 ..      20      97 ..       4     103 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 6.8e-13
   TIGR01158 20 rpkedqvvrirrekkGRkGkevtiieGldlsdidlkelakeLKskcacGGtvkdg.....viElQGdhrekvkelLekkg 94
                + +++++v++r++++    k +t++ Gl  +d d+k++ k+ K+++ c G+v+++     vi l Gd+r  vke+L+++ 
  MMETSP1061-20121228|4264_1 20 AGTSEEKVHVRVQQR-NGRKCITTVAGLA-DDLDIKRICKAFKKNFNCNGAVQKDedvgeVIQLSGDQRTNVKEFLVDQE 97
                356778888887776.334679******6.789*******************87533333699*************9985 PP

>> TIGR01159  DRP1: density-regulated protein DRP1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.5   2.4e-10   2.5e-07      77     154 ..      17      95 ..       5     104 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 2.4e-10
   TIGR01159  77 kkkkkklkqkvvikkiaRaKrk.vvvikGLevFdidlkkasklfakkFatG.svvksvtekeeiviqGDvsddivdlite 154
                  k +++ ++kv ++ + R+ rk ++++ GL+  d+d+k++ k f k F    +v k+ +  e i + GD   ++ +++ +
  MMETSP1061-20121228|4264_1  17 DKGAGTSEEKVHVRVQQRNGRKcITTVAGLAD-DLDIKRICKAFKKNFNCNgAVQKDEDVGEVIQLSGDQRTNVKEFLVD 95 
                 466788999*************9*******96.***************87449999999999999*********999876 PP

>> TIGR02525  plasmid_TraJ: plasmid transfer ATPase TraJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   3.6e-05     0.037      37      90 ..      31      87 ..      14      91 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.6e-05
   TIGR02525 37 v.erhGrkvrassfpledaelerlvdelfgrei..kstvksgkpvdraiqleGdeng 90
                v +r+Grk  +++  l+d+   + + + f ++   ++ v+  + v   iql+Gd+  
  MMETSP1061-20121228|4264_1 31 VqQRNGRKCITTVAGLADDLDIKRICKAFKKNFncNGAVQKDEDVGEVIQLSGDQRT 87
                32689**************9999999***997522689****************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 685.09
//
Query:       MMETSP1061-20121228|4266_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00081   17.3   3.3     0.0018   16.2   2.1    1.7  1  TIGR04117 Syntroph_Cxxx: Cys-Xaa-Xaa-Xaa repeat radical SAM target protein


Domain annotation for each model (and alignments):
>> TIGR04117  Syntroph_Cxxx: Cys-Xaa-Xaa-Xaa repeat radical SAM target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   2.1   4.5e-07    0.0018      24      86 ..     103     162 ..      83     169 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.5e-07
   TIGR04117  24 rrgflatagkiiiPtlGilGlslaklspravaadcasicsggcseacsgctdGcsgscsgtce 86 
                 rr+++a +  +   t+G +   l++  p ++aadc + c  +c       ++ c+ sc+  c 
  MMETSP1061-20121228|4266_1 103 RRDYFASIVGA-ATTVGAV--LLSSPEPASAAADCFKDCVKSCLIIAPKDKQYCADSCTDYCA 162
                 66666543332.2355544..455667999*************98877756666666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 940.95
//
Query:       MMETSP1061-20121228|4268_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.43
# Mc/sec: 828.77
//
Query:       MMETSP1061-20121228|4271_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.41    7.6   5.3       0.48    7.4   3.7    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.7   0.00012      0.48      80     125 ..      51      95 ..      27     104 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00012
   TIGR00601  80 vkakaaePaatpesaptptpsatpasvaekksaaPasaveeessae 125
                  ++++ +P+a+p+ ap  + +++  sv+++++++P+++++  ++++
  MMETSP1061-20121228|4271_1  51 KNTETDNPTAQPSRAPLESAQSPSQSVSASPTTSPTATMSS-TPTR 95 
                 2357999********99998899999999999999887653.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 737.94
//
Query:       MMETSP1061-20121228|4272_1  [L=953]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-35  117.7   9.7    3.7e-20   69.2   0.2    6.0  6  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    1.1e-29  101.5  10.5    4.7e-08   30.7   0.0    7.9  7  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    3.4e-14   50.6   1.0     0.0043   14.6   0.0    6.2  6  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    4.3e-12   42.9   9.4    3.2e-05   20.2   0.1    4.7  5  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    1.2e-07   28.6   0.0      0.096    9.1   0.0    5.9  7  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    6.5e-06   24.6   6.1        4.5    5.8   0.1    6.6  7  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.3    0.0001      0.07     152     206 ..      25      79 ..       8     109 .. 0.68
   2 !   16.2   0.0   5.7e-07   0.00039     483     586 ..     100     206 ..      91     216 .. 0.52
   3 !    4.3   0.1    0.0023       1.6     480     509 ..     261     290 ..     234     303 .. 0.56
   4 !   16.2   0.0   5.8e-07   0.00039     414     499 ..     355     440 ..     342     456 .. 0.64
   5 !    2.9   0.0    0.0062       4.3     181     249 ..     482     551 ..     468     567 .. 0.61
   6 !   69.2   0.2   5.5e-23   3.7e-20     398     669 ..     578     850 ..     567     854 .. 0.95

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0001
   TIGR02917 152 laiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllss 206
                 ++++ +s+  +++ A+    +++  ea++l++++L++d k + ++l ++ ll  +
  MMETSP1061-20121228|4272_1  25 QHDNRNSIRIMFQTAKNMERQGRWGEAQNLLEQILQKDSKDSHSHLALARLLARR 79 
                 4555566666677777666677777777777777777777777776666665544 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 5.7e-07
   TIGR02917 483 kAreafekALkiepdffpAlanLArldlqe.kniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkelepal..aLaqyylskgelkka 586
                 kA+eaf    +  p++++ l   A ++ q+ +++  A++ fe+ laidp n  +  a++ ++++ g+ ++a++ll++  +  ++ ++ al   L++ y s g+l  a
  MMETSP1061-20121228|4272_1 100 KAQEAFARGTQACPGNIFLLQAWAVYEQQTlGDMSRARELFEECLAIDPVNPYVCHAYSLMEKQLGHYDAAISLLKQVLQTRNAKVTAALvcTLGEIYISTGNLPEA 206
                 55555555555555555555555555554435555555555555555555555555555555555555555555555555444444443322455555555554433 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0023
   TIGR02917 480 dlakAreafekALkiepdffpAlanLArld 509
                 dl kAr+ ++kAL+i p +  A +  Arl+
  MMETSP1061-20121228|4272_1 261 DLRKARSLLRKALSISPTSSLANVAVARLE 290
                 444555555555555555555555555543 PP

  == domain 4    score: 16.2 bits;  conditional E-value: 5.8e-07
   TIGR02917 414 seaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdff 499
                 + + ++L++A  + ++ +r+  +L++   ++++f+ a  +++k    +p + +l+   g +    +++a+Are ++++L +ep   
  MMETSP1061-20121228|4272_1 355 KTGEEELRDADVTTNDDGRVFNALASLEVKRQRFKEAQEVLRKGMDLYPFDHNLFTAAGKVEERLGNYARAREMYQESLRLEPSAP 440
                 34666666666666666666666666666666666666666666666666666666666666666666666666666666666533 PP

  == domain 5    score: 2.9 bits;  conditional E-value: 0.0062
   TIGR02917 181 lvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatil.leegefeeAekk 249
                 l +e+L  dp n +A++  g+ +  +gnieeA  +++   +++  ++a+ +    +l ++ g++ +A++ 
  MMETSP1061-20121228|4272_1 482 LFEEALLLDPRNGPAYNAYGNAEARRGNIEEARLVFDRGTHANCSDAASIYHGYGMLeISVGNVGKARSI 551
                 5566666667777777777777777777776666666666666666555555443322555555555554 PP

  == domain 6    score: 69.2 bits;  conditional E-value: 5.5e-23
   TIGR02917 398 aaktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkal.laLaelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnt 669
                  +   lg+++L ++++  a++ +e+ ++   ++++  l  +ls +r g+ d a++  ++ +   +  a+ ++  g    + +  ++A + f+k  k +p + +  +  A+l++ ++ni +A+  f   l+ +++  +al +  a l+ r+gn e+a +l++ a ++++ +  + +  aq  +++g+   a  +l+   +  pd+  l+  lg+ +l + + ++a+e++++ +  +p +a+ +  la+  a+  n +++++  k+a e++++n+
  MMETSP1061-20121228|4272_1 578 FLSHTLGMLELNSNKPAAALSLFEEGLERCGNSSQLLLGAALSEMRLGKEDAARSLFERSLLADEKHAQAWQAWGVMETKAGHFNRASALFQKGIKKAPWHGSLWHGYAMLEMRQDNISNARTLFTGGLKKAKNRHDALyQGWATLEMREGNLEKARKLISDALTRNKRNGRGWMVAAQVEEEDGNDGLADLLLRRGIECDPDNGPLYRKLGDRLLGKNKINEAREVYEEGIDSNPMHAPLYHSLAELEARICNLEALARLNKRANEIFNNNV 850
                 556789*******************998888888888888*****************************************************************************************9999877776378***************************************************************************************************************************99999875 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.3    0.0001     0.071      17      75 ..      18      76 ..       7      89 .. 0.84
   2 !    7.7   0.0   0.00071      0.49     145     199 ..     161     217 ..     156     223 .. 0.84
   3 !    9.8   0.0   0.00017      0.11      24      77 ..     236     292 ..     223     303 .. 0.78
   4 !   11.8   0.1     4e-05     0.028     152     230 ..     355     434 ..     338     438 .. 0.83
   5 !   11.8   0.0   4.2e-05     0.028      88     167 ..     483     561 ..     470     568 .. 0.87
   6 !   30.7   0.0   6.9e-11   4.7e-08      21     191 ..     567     736 ..     559     737 .. 0.93
   7 !   20.5   0.0   8.8e-08     6e-05      42     129 ..     725     812 ..     720     850 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0001
   TIGR02521 17 evkesskkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyy 75
                + ++++++ d+ +  +i  q a +  +qg   +A++ le+ l++d+kd++ +lalA ++
  MMETSP1061-20121228|4272_1 18 DSQQQQQQHDNRNSIRIMFQTAKNMERQGRWGEAQNLLEQILQKDSKDSHSHLALARLL 76
                556777777777778888999999999****************************9876 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00071
   TIGR02521 145 alkagdtekaekyltralkidpkrpesll..elaelklkkgqyaeAralleryqqtv 199
                  +++g+ + a + l++ l+ +  +  + l  +l e+++++g++ eAr l+ r+   +
  MMETSP1061-20121228|4272_1 161 EKQLGHYDAAISLLKQVLQTRNAKVTAALvcTLGEIYISTGNLPEARRLYSRHTGKI 217
                 567899999**********998887775434899******************98766 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00017
   TIGR02521  24 kkdrekaakirvqLaleYleqg...dlekAkenlekAleldpkdadanlalAlyyqq 77 
                  + +++  ++ v La+++le+    dl+kA+  l kAl + p ++ an a A +  +
  MMETSP1061-20121228|4272_1 236 RYLPNEKDRVEVYLAAAWLEERhfaDLRKARSLLRKALSISPTSSLANVAVARLEGR 292
                 45566778999999*****9872335789********************99977555 PP

  == domain 4    score: 11.8 bits;  conditional E-value: 4e-05
   TIGR02521 152 ekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaake.yeaqLq 230
                 +  e+ l+ a     +  + +++la l++k+++ +eA+++l +  ++++ + +  + + +++++lg++a a+e y+++L+
  MMETSP1061-20121228|4272_1 355 KTGEEELRDADVTTNDDGRVFNALASLEVKRQRFKEAQEVLRKGMDLYPFDHNLFTAAGKVEERLGNYARAREmYQESLR 434
                 4556778888888888999999999999*************999999999999999999999999999988753666664 PP

  == domain 5    score: 11.8 bits;  conditional E-value: 4.2e-05
   TIGR02521  88 frkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpk 167
                 f++Al l+p ng ++N YG    +++++eeA   f++  ++ +    a+ y   g+   + g++ ka++ l + l++ ++
  MMETSP1061-20121228|4272_1 483 FEEALLLDPRNGPAYNAYGNAEARRGNIEEARLVFDRGTHA-NCSDAASIYHGYGMLEISVGNVGKARSILYEGLEKVRQ 561
                 99*********************************998765.567788899999**********9999999888876655 PP

  == domain 6    score: 30.7 bits;  conditional E-value: 6.9e-11
   TIGR02521  21 sskkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpeslle.laelklkkgqyaeAral 191
                 ss++ +r +aa     L++  l++++ ++A    e+ le   ++++  l  Al  ++lg++++A   f+++l  +++ +++   +G+   + ++++ A + f++ i++  +    + +   ++  +++ +  +a++ +t  lk+ ++r ++l++  a l++ +g++ +Ar+l
  MMETSP1061-20121228|4272_1 567 SSDNPNRDRAAFLSHTLGMLELNSNKPAAALSLFEEGLERCGNSSQLLLGAALSEMRLGKEDAARSLFERSLLADEKHAQAWQAWGVMETKAGHFNRASALFQKGIKKAPWH--GSLWHGYAMLEMRQDNISNARTLFTGGLKKAKNRHDALYQgWATLEMREGNLEKARKL 736
                 678899999999999*******************************************************************************************987654..46788889*****************************98648*************987 PP

  == domain 7    score: 20.5 bits;  conditional E-value: 8.8e-08
   TIGR02521  42 leqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedp 129
                 +++g+lekA++ + +Al+ ++ + + +++ A + ++ g+++ A+   r++++ +p+ng ++   G  L  + k++eA + +e+ i ++
  MMETSP1061-20121228|4272_1 725 MREGNLEKARKLISDALTRNKRNGRGWMVAAQVEEEDGNDGLADLLLRRGIECDPDNGPLYRKLGDRLLGKNKINEAREVYEEGIDSN 812
                 789***************************************************************************9999988765 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.08        55      13      60 ..      27      74 ..      16      79 .. 0.73
   2 !   12.7   0.2   2.5e-05     0.017      55     119 ..     119     184 ..      99     207 .. 0.80
   3 !    8.4   0.0   0.00052      0.36      28      87 ..     382     441 ..     360     448 .. 0.83
   4 ?    3.7   0.0     0.014       9.8      45     111 ..     487     554 ..     475     577 .. 0.82
   5 ?    1.1   0.0     0.091        62      52      88 ..     611     647 ..     595     657 .. 0.83
   6 !   14.6   0.0   6.3e-06    0.0043      29     120 ..     656     748 ..     641     760 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.08
   TIGR02552 13 ldeeqleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaa 60
                 + + +  ++++A n+  qg++ eA++l +   + d  +++ +l+La 
  MMETSP1061-20121228|4272_1 27 DNRNSIRIMFQTAKNMERQGRWGEAQNLLEQILQKDSKDSHSHLALAR 74
                455666667777778888888888888888888888888888888875 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 2.5e-05
   TIGR02552  55 wlgLaacl.qalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeek 119
                 + ++a+   q l+++++A++ ++ ++a+d+ +p++  + +    +lg +  A + Lk ++++ ++k
  MMETSP1061-20121228|4272_1 119 LQAWAVYEqQTLGDMSRARELFEECLAIDPVNPYVCHAYSLMEKQLGHYDAAISLLKQVLQTRNAK 184
                 556666651568999999999999999999999999999999999999999999999999988765 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00052
   TIGR02552  28 lyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddpr 87 
                 ++++ +++eA+++ +  + l p++++ + + + +  +l++y++A+++Y+  + l++++p 
  MMETSP1061-20121228|4272_1 382 EVKRQRFKEAQEVLRKGMDLYPFDHNLFTAAGKVEERLGNYARAREMYQESLRLEPSAPT 441
                 566778888888888888888999999999999999999999999999999999999886 PP

  == domain 4    score: 3.7 bits;  conditional E-value: 0.014
   TIGR02552  45 aaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaec.llalgekeeAlkaLkl 111
                  +ldp +     + + +  + ++ eeA+  +++ + ++ +d++ +yh +    + +g+  +A++ L  
  MMETSP1061-20121228|4272_1 487 LLLDPRNGPAYNAYGNAEARRGNIEEARLVFDRGTHANCSDAASIYHGYGMlEISVGNVGKARSILYE 554
                 567777777778889999999*****************999999999875416889999999888765 PP

  == domain 5    score: 1.1 bits;  conditional E-value: 0.091
   TIGR02552  52 akywlgLaaclqalkeyeeAiaaYalaaaldlddprp 88 
                 ++ +lg a++ ++l++ + A+  +++ + +d++++++
  MMETSP1061-20121228|4272_1 611 SQLLLGAALSEMRLGKEDAARSLFERSLLADEKHAQA 647
                 5667888999999999999999999999999888776 PP

  == domain 6    score: 14.6 bits;  conditional E-value: 6.3e-06
   TIGR02552  29 yqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyha.aecllalgekeeAlkaLklaieiaeeke 120
                  ++g +++A+ lFq  +   p+    w g a+  +++++ ++A+  ++  ++  ++ ++++y+  a   +  g+ e+A+k +  a+ + + + 
  MMETSP1061-20121228|4272_1 656 TKAGHFNRASALFQKGIKKAPWHGSLWHGYAMLEMRQDNISNARTLFTGGLKKAKNRHDALYQGwATLEMREGNLEKARKLISDALTRNKRNG 748
                 4689*******************************************************999863777788999******9999998887665 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   4.7e-08   3.2e-05     327     486 ..      49     210 ..      40     239 .. 0.90
   2 !    9.6   0.0   7.2e-05     0.049     118     191 ..     368     443 ..     363     473 .. 0.67
   3 !    5.5   0.1    0.0013      0.86     103     181 ..     594     672 ..     589     688 .. 0.81
   4 !    9.5   0.8   7.9e-05     0.054     405     495 ..     655     746 ..     641     764 .. 0.85
   5 !    9.5   0.0     8e-05     0.055     365     497 ..     684     816 ..     678     825 .. 0.93

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 4.7e-08
   TIGR03939 327 ekAlslyrelaqaepaknnleleekLfyAlleaeqyeeAqalldkllestPpqvwdfgrstkapNddyleaqslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaesl..epdslsaergqaetaldlqewrqaeali 486
                  +A++l++++ q+++++ +  l      A  e + +  +++l  +++    +    f r t+a  ++   +q  +v  +   gd+s A +  ee la+ P N+++  a++ +e+  g+ ++A +llk++ +   ++ ++ +   ++e+++++++  +a +l 
  MMETSP1061-20121228|4272_1  49 GEAQNLLEQILQKDSKDSHSHLALARLLARREGGPISSSEQLSVTTSPMPTKAQEAFARGTQACPGNIFLLQAWAVYEQQTLGDMSRARELFEECLAIDPVNPYVCHAYSLMEKQLGHYDAAISLLKQVLQTrnAKVTAALVCTLGEIYISTGNLPEARRLY 210
                 589*************999999999999********************98899999****************************************************************************655556666678888888888888887776 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 7.2e-05
   TIGR03939 118 knpdlllGlaltlada..gkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkell 191
                 +n+d+++  al++++   ++ +eA++ l++    +p d + ++a + v ++++++++a + +q+ lrleP+ ++l+
  MMETSP1061-20121228|4272_1 368 TNDDGRVFNALASLEVkrQRFKEAQEVLRKGMDLYPFDHNLFTAAGKVEERLGNYARAREMYQESLRLEPSAPTLV 443
                 5566665555555554114456777777777777777777777777777777777777777777777777666555 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.0013
   TIGR03939 103 dkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqal 181
                 + Al+l+++ l+r  ++ +lllG al++   gk++ A +  ++   +++++a+  +a++ + ++a+   +a a  q+ +
  MMETSP1061-20121228|4272_1 594 AAALSLFEEGLERCGNSSQLLLGAALSEMRLGKEDAARSLFERSLLADEKHAQAWQAWGVMETKAGHFNRASALFQKGI 672
                 5799************************************999999999999999999888777776655555555555 PP

  == domain 4    score: 9.5 bits;  conditional E-value: 7.9e-05
   TIGR03939 405 laysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaesl.epdslsaergqaetaldlqewrqaealiddlvaryPe 495
                 +  +g ++ A +  ++  ++AP  +sl+  +a +e  +++ ++A  l++   +  +++   +++g a + +  ++ ++a +li d  +r ++
  MMETSP1061-20121228|4272_1 655 ETKAGHFNRASALFQKGIKKAPWHGSLWHGYAMLEMRQDNISNARTLFTGGLKKaKNRHDALYQGWATLEMREGNLEKARKLISDALTRNKR 746
                 556788999999999999******************************99887768999999999999************999998877554 PP

  == domain 5    score: 9.5 bits;  conditional E-value: 8e-05
   TIGR03939 365 AqalldkllestPpqvwdfgrstkapNddyleaqslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsaergqaetaldlqewrqaealiddlvaryPedk 497
                 ++a+l+  +++ +  + +f++  k+  + +  + +  ++l++ +g+l++A k ++++l     N+  ++  a+ve+  g+   A  ll++    +pd+  ++r+++   l ++  ++a ++ ++     P ++
  MMETSP1061-20121228|4272_1 684 GYAMLEMRQDNISNARTLFTGGLKKAKNRHDALYQGWATLEMREGNLEKARKLISDALTRNKRNGRGWMVAAQVEEEDGNDGLADLLLRRGIECDPDNGPLYRKLGDRLLGKNKINEAREVYEEGIDSNPMHA 816
                 567888889999999999999999999999999999*********************************************************************************9999999888888765 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.62   4.3e+02     523     553 ..      47      77 ..      36      80 .. 0.80
   2 ?    0.1   0.0     0.073        50     517     566 ..     126     175 ..     107     190 .. 0.76
   3 !    3.3   0.0    0.0081       5.6     520     552 ..     258     290 ..     247     301 .. 0.82
   4 !    3.1   0.0     0.009       6.2     370     431 ..     377     438 ..     343     463 .. 0.76
   5 ?    2.1   0.0     0.018        12     521     568 ..     473     520 ..     448     529 .. 0.89
   6 !    9.1   0.0   0.00014     0.096     336     465 ..     582     711 ..     554     753 .. 0.70
   7 ?    0.2   0.0     0.067        46     348     409 ..     763     826 ..     730     851 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.62
   TIGR00990 523 dfieaekllekalildPesdiavitlaqlll 553
                  + ea++lle+ l+ d +   +  +la+ll 
  MMETSP1061-20121228|4272_1  47 RWGEAQNLLEQILQKDSKDSHSHLALARLLA 77 
                 4679999999999999999999999998875 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.073
   TIGR00990 517 lfrtkedfieaekllekalildPesdiavitlaqlllqqekvdealklfe 566
                   +t  d + a +l e  l +dP       + + +  q ++ d a+ l+ 
  MMETSP1061-20121228|4272_1 126 EQQTLGDMSRARELFEECLAIDPVNPYVCHAYSLMEKQLGHYDAAISLLK 175
                 45678888899999999999999888888888888888888888887765 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.0081
   TIGR00990 520 tkedfieaekllekalildPesdiavitlaqll 552
                    d   a  ll kal + P s  a +++a+l 
  MMETSP1061-20121228|4272_1 258 HFADLRKARSLLRKALSISPTSSLANVAVARLE 290
                 55678899**********************984 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.009
   TIGR00990 370 krasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpd 431
                   as+ ++++  ++a+e + k +++ + d +++   ++++  +g++a a   y+ s  l+p 
  MMETSP1061-20121228|4272_1 377 ALASLEVKRQRFKEAQEVLRKGMDLYPFDHNLFTAAGKVEERLGNYARAREMYQESLRLEPS 438
                 45777788888888888888888888888888888888888888888888888888888774 PP

  == domain 5    score: 2.1 bits;  conditional E-value: 0.018
   TIGR00990 521 kedfieaekllekalildPesdiavitlaqlllqqekvdealklfera 568
                 + +f+    l e al ldP+   a  +      ++++++ea  +f+r 
  MMETSP1061-20121228|4272_1 473 VANFTLIRGLFEEALLLDPRNGPAYNAYGNAEARRGNIEEARLVFDRG 520
                 678999999********************************9999986 PP

  == domain 6    score: 9.1 bits;  conditional E-value: 0.00014
   TIGR00990 336 lrGifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpe 465
                   G++++  +k+  al  ++  +e   + +q  +  a+  + lg+ d a   f+++l  d + ++ +   + ++   g+f+ a+  ++k i+  p +   +   a+l+ ++++i ++ +lf    kk ++
  MMETSP1061-20121228|4272_1 582 TLGMLELNSNKPAAALSLFEEGLERCGNSSQLLLGAALSEMRLGKEDAARSLFERSLLADEKHAQAWQAWGVMETKAGHFNRASALFQKGIKKAPWHGSLWHGYAMLEMRQDNISNARTLFTGGLKKAKN 711
                 4466666677777777777777777777777777777777777777777777777777777777777777777777777777777777777777776666667777777777777777777766666544 PP

  == domain 7    score: 0.2 bits;  conditional E-value: 0.067
   TIGR00990 348 eealad..lsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlh 409
                 ++ lad  l++ ie dP     y k     l +++ ++a e +++ ++ ++  + +y+  a l+
  MMETSP1061-20121228|4272_1 763 NDGLADllLRRGIECDPDNGPLYRKLGDRLLGKNKINEAREVYEEGIDSNPMHAPLYHSLAELE 826
                 5566663347889999998888999999999999999999999999999999888888777765 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.1    0.0066       4.5      74     118 ..      30      74 ..       7      75 .. 0.79
   2 ?    4.9   0.0     0.012       8.2      16     107 ..     131     221 ..     120     234 .. 0.65
   3 ?    3.8   0.0     0.026        18       9      73 ..     379     440 ..     372     452 .. 0.81
   4 ?   -3.6   0.0       5.2   3.6e+03      45      67 ..     500     522 ..     494     553 .. 0.69
   5 ?    3.1   0.0     0.044        30      30     100 ..     568     635 ..     557     640 .. 0.86
   6 ?    1.9   0.1      0.11        72      14      98 ..     657     736 ..     642     743 .. 0.62
   7 ?    0.8   0.0      0.23   1.5e+02      45      73 ..     788     816 ..     785     866 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0066
   TIGR02795  74 kapdallklgeslqelgqkekAkktlqevikrYPkssaaklakkr 118
                  +   +++ ++ ++++g++ +A++ l+++ ++ +k s ++la +r
  MMETSP1061-20121228|4272_1  30 NSIRIMFQTAKNMERQGRWGEAQNLLEQILQKDSKDSHSHLALAR 74 
                 44457999**********************998888888877665 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.012
   TIGR02795  16 gdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqev...ikrYP 107
                 gd + A++ F++ l   P ++++  A+  l e   + ++y++A+   ++v+++  + + ++     lge++  +g+  +A++ +++    i++YP
  MMETSP1061-20121228|4272_1 131 GDMSRARELFEECLAIDPVNPYVCHAY-SLME--KQLGHYDAAISLLKQVLQT-RNAKVTAALVCTLGEIYISTGNLPEARRLYSRHtgkIEKYP 221
                 566667777777777777777777663.3333..3568899999999999883.33344444456899999999999999998875322256666 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.026
   TIGR02795   9 allvlkegdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypkse 73 
                 a+l +k++++++A++ +++ ++ YP ++    A    G++  + ++y++A + ++e ++  p+ +
  MMETSP1061-20121228|4272_1 379 ASLEVKRQRFKEAQEVLRKGMDLYPFDHNLFTA---AGKVEERLGNYARAREMYQESLRLEPSAP 440
                 566789999999999999999999988888888...59999999999999999999888777655 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 5.2
   TIGR02795  45 lGealyakkkykdAakaflevvk 67 
                 +G+a  +++++++A   f   ++
  MMETSP1061-20121228|4272_1 500 YGNAEARRGNIEEARLVFDRGTH 522
                 57777788888888887777665 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.044
   TIGR02795  30 kkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlq 100
                 +++P+ + a+  +  lG + ++ +k ++A   f+e +++  +s+   + ll  + s  +lg++++A++ ++
  MMETSP1061-20121228|4272_1 568 SDNPNRDRAAFLSHTLGMLELNSNKPAAALSLFEEGLERCGNSS---QLLLGAALSEMRLGKEDAARSLFE 635
                 5678888888888899999*******************988875...689****************99886 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.11
   TIGR02795  14 kegdYakAeqaFkaFlkkYPkstlapnAqYwlGealya..kkkykdAakaflevvkkypksekapdallk.lgeslqelgqkekAkkt 98 
                 k+g ++ A++ F++ +kk P +      + w G a+++  + ++++A + f   +k   k + + dal++  +++  + g+ ekA+k 
  MMETSP1061-20121228|4272_1 657 KAGHFNRASALFQKGIKKAPWHG-----SLWHGYAMLEmrQDNISNARTLFTGGLK---KAKNRHDALYQgWATLEMREGNLEKARKL 736
                 56777777777777777777653.....5677776654114456677777776666...55556666665346666666666666665 PP

  == domain 7    score: 0.8 bits;  conditional E-value: 0.23
   TIGR02795  45 lGealyakkkykdAakaflevvkkypkse 73 
                 lG  l+ k+k+++A + ++e + ++p ++
  MMETSP1061-20121228|4272_1 788 LGDRLLGKNKINEAREVYEEGIDSNPMHA 816
                 78889999999999999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (953 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.65u 0.16s 00:00:00.81 Elapsed: 00:00:01.62
# Mc/sec: 776.45
//
Query:       MMETSP1061-20121228|4274_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.11s 00:00:00.44 Elapsed: 00:00:00.86
# Mc/sec: 1158.74
//
Query:       MMETSP1061-20121228|4273_1  [L=648]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   11.3   9.9     0.0007   15.2   2.4    1.8  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.3    0.0082        34     420     472 ..     284     336 ..     218     398 .. 0.64
   2 ?   15.2   2.4   1.7e-07    0.0007     670     773 ..     446     549 ..     407     585 .. 0.49

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.0082
   TIGR02169 420 eeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekel 472
                 ++ +++  ++l + +e  +e+  ++e+ ++eik+  +  +++ e+++ + +el
  MMETSP1061-20121228|4273_1 284 QSVIEKTTQNLVKRKEVTEEFMPRAEDFRYEIKRRANYFMNMDEQKSYYVQEL 336
                 22233333333333333333333333333333333333333333333333332 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.7e-07
   TIGR02169 670 sasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieelee 773
                 +++++++ +++ +++  L ++     +e++  ++ l++ ++++   e ki e  +  e l++   k +   +e+e++++ le++++++++ +++ ++ ++    
  MMETSP1061-20121228|4273_1 446 AVKKQNQQQNILNKITVLTQSIMGYNQEISIKQSTLSDIQNRILTVEMKIAENPAAEEGLKAIVVKHESSKTEVESQIKVLEDKVAAVRADIDAQNETLKTIDD 549
                 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444443333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (648 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       295  (0.0719161); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.52
# Mc/sec: 1644.79
//
Query:       MMETSP1061-20121228|4275_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 1421.42
//
Query:       MMETSP1061-20121228|4276_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 637.95
//
Query:       MMETSP1061-20121228|4277_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.17
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|4280_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 347.08
//
Query:       MMETSP1061-20121228|4278_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.61
# Mc/sec: 1363.17
//
Query:       MMETSP1061-20121228|4281_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.47
# Mc/sec: 1536.13
//
Query:       MMETSP1061-20121228|4284_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.27s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 1792.27
//
Query:       MMETSP1061-20121228|4287_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1590.47
//
Query:       MMETSP1061-20121228|4292_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1380.39
//
Query:       MMETSP1061-20121228|4290_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1382.41
//
Query:       MMETSP1061-20121228|4289_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 1004.82
//
Query:       MMETSP1061-20121228|4294_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00034   17.8   7.2    0.00062   16.9   5.0    1.4  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   5.0   1.5e-07   0.00062      26      69 ..      76     126 ..      72     135 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.5e-07
   TIGR00599  26 slRChvCkdffkaPv.ltsCsHtFCslCiRrcLsee......pkCPlCrae 69 
                  ++C++C ++++ Pv    Cs  FC  C+ r+  ++      ++CP+Cr e
  MMETSP1061-20121228|4294_1  76 RFKCQICYEYMNDPVgCGKCSSRFCRACLQRVFDSDrqneqlTRCPVCRCE 126
                 589************5678***********99876522233458*****87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 1098.15
//
Query:       MMETSP1061-20121228|4295_1  [L=1031]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1031 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       311  (0.0758167); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.51
# Mc/sec: 2668.25
//
Query:       MMETSP1061-20121228|4298_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-08   31.0   1.9    1.2e-07   29.3   1.3    1.9  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    0.00026   17.3   0.1    0.00049   16.4   0.0    1.3  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0014   16.6   0.1     0.0014   16.6   0.0    2.1  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
  ------ inclusion threshold ------
      0.034   12.2   0.2       0.07   11.2   0.2    1.5  1  TIGR03757 conj_TIGR03757: integrating conjugative element protein, PFL_4709 family


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   1.3   1.2e-10   1.2e-07      11      55 ..      95     146 ..      86     240 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.2e-10
   TIGR02349  11 dAseeeikkAYrklakkyHPDrnkg.......ekeaeekfkeineAyevLsd 55 
                 +A+++ +k+AY+k a kyHPD+  +       +k+a+++f +in Aye L  
  MMETSP1061-20121228|4298_1  95 TADKKVLKRAYKKRALKYHPDVVTDvhsspeaKKKASDRFAKINGAYEQLMG 146
                 79999****************99888887888999*************8865 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   4.8e-07   0.00049       7      54 ..      88     144 ..      83     148 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.8e-07
   TIGR03835   7 vLgid.rDadeqeikkafrkLakkyhPDrnka....ad....aakifaeineandvL 54 
                  Lg+d + ad++ +k+a++k a kyhPD   +    ++    a + fa in a++ L
  MMETSP1061-20121228|4298_1  88 LLGLDgPTADKKVLKRAYKKRALKYHPDVVTDvhssPEakkkASDRFAKINGAYEQL 144
                 5677646799999**************9765432235511115568********976 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-06    0.0014       3      47 ..      96     144 ..      95     146 .. 0.90
   2 ?   -1.0   0.6      0.35   3.6e+02      84     102 ..     306     324 ..     275     367 .. 0.51

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.4e-06
   TIGR00714   3 lDekaLrkryrklQkqyHPD....vsksaqeqaaalqqStelNqAykTL 47 
                  D+k+L++ y+k   +yHPD    v +s   +++a+ + +++N Ay+ L
  MMETSP1061-20121228|4298_1  96 ADKKVLKRAYKKRALKYHPDvvtdVHSSPEAKKKASDRFAKINGAYEQL 144
                 599*****************98776778888999************977 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.35
   TIGR00714  84 klrdeleeieqakdeaale 102
                 k rd  +ei   + ea++ 
  MMETSP1061-20121228|4298_1 306 KSRDLDDEIFSVDAEAKMA 324
                 3344444444444444332 PP

>> TIGR03757  conj_TIGR03757: integrating conjugative element protein, PFL_4709 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   6.8e-05      0.07      18      69 ..     309     360 ..     295     372 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.8e-05
   TIGR03757  18 epavrvielDaverleaqlsaeLpadpeqAealvrqrlqspeakrlqeelaq 69 
                 + + +++ +Da ++++a++s++L ++++ Ae  +r+ +     +r q++l +
  MMETSP1061-20121228|4298_1 309 DLDDEIFSVDAEAKMAARFSEKLEKEERAAELKARKDVVGGYLQRAQKRLLA 360
                 456789******************************9999999999988644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 2511.92
//
Query:       MMETSP1061-20121228|4302_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 2106.55
//
Query:       MMETSP1061-20121228|4306_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|4307_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.18
# Mc/sec: 315.31
//
Query:       MMETSP1061-20121228|4308_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.31
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|4305_1  [L=1719]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1719 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.17s 00:00:00.89 Elapsed: 00:00:00.64
# Mc/sec: 3545.14
//
Query:       MMETSP1061-20121228|4304_1  [L=831]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-58  196.9  10.9    2.6e-58  195.6   0.1    2.4  2  TIGR02350 prok_dnaK: chaperone protein DnaK
    8.7e-44  147.8   0.5      2e-43  146.6   0.0    1.8  2  TIGR01991 HscA: Fe-S protein assembly chaperone HscA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.6   0.1   1.3e-61   2.6e-58       2     375 ..       3     411 ..       2     419 .. 0.85
   2 !    5.7   2.6   0.00041      0.84     480     574 ..     565     664 ..     561     688 .. 0.69

  Alignments for each domain:
  == domain 1    score: 195.6 bits;  conditional E-value: 1.3e-61
   TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen......evkveve.....dkeytpeeisaeiLqkl....kkdaeaylGekvtea........vitvPayfndaqrqatkdaGkiaGl.evlriinePtaaaLayGldke.......kkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLs....kdkmalqrlkeaaekakieLs..saleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkg 375
                 ++G+d+G  n v++    g   vi n + +r  P++v+f ++  ++  ++a    +   ++ti ++krl+G ++e  + ++e+k+vpyk+v   +      +++v+v      d+    e++  ++++++     k+a++  G ++t+         vi++P y+ daqr+a  +  ki G+  v+r++ e ta aLayG+ k+       +k ++++  d+G  +f v+i  ++ g + vks + d  +GG dfde i +++ae+f ++ g  Ls       +++ ++  aaekak+ Ls  +++e++inl  +  d     ++++ l    +e++ ++l+ + +ep+kk+l++akl+a ++ +v +vGGstri  +++++k+++g  + + ++n de+v+ Gaa+q+++l+ 
  MMETSP1061-20121228|4304_1   3 VVGLDIGLQNCVISAAGRGGVDVILNGNSNRLNPAMVTFDES-RKMGEQVAGSTSISKFKTTIKNMKRLVGLSFEdpRAQKEMKRVPYKCVPLPHasggpaSIAVKVPnsegvDNIIPIEQVLGMVIHHMgmiaAKKASEASGSNITDPaalfpqdwVIAIPPYYTDAQRRAVLNGCKIVGIpGVQRLMHENTATALAYGIFKDirkeftkEKPTNVMFIDMGASAFTVTIAAFEPGKLTVKSCNFDDSVGGRDFDELIGNWVAEKFVEKYGKKLScapqSKPKVMLKIMAAAEKAKKTLSpqGVKEASINLECLMEDL----DFNIMLKAEDYEAMSAPLLAKLEEPIKKTLAEAKLTAADLSSVEIVGGSTRIGFLKKKMKDILGvSTLSTTMNADEAVSRGAALQSAILSP 411
                 89**************************************99.8888899************************96678999********975431112234566664333334556679999****9984444467888899999863234444559************************55****************97753222322344579999***************************************************999973332345678999***********9545789999999998775....5677778889******************************************************6678999*****************975 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.00041
   TIGR02350 480 kdkatgkeqsititassgls..eeeiermvkeaeanaeedkkkkeevearneadsliyqaektlk...eagdkleeeekekiekaveelkealkeedvee 574
                 + k+  k  +++ t+s  l+  ++ei        a + +d+  +e+ ++rne++s+iy ++++++   + g+ ++++ek++  k+ +e ++ l e+  ++
  MMETSP1061-20121228|4304_1 565 EKKKKVKRTNLEYTESKPLEwtDAEIATFSATETAMRSADRLVQETSDMRNELESYIYDMRDKITmesSLGAYATDAEKDNYIKKNDETENWLYEDGFDA 664
                 556666777777777777752267777777777888999*********************9998621134556777777777777777777776665433 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   0.0   9.9e-47     2e-43       1     363 [.       3     410 ..       3     416 .. 0.82
   2 ?   -3.8   0.0      0.34     7e+02     452     479 ..     513     540 ..     506     559 .. 0.79

  Alignments for each domain:
  == domain 1    score: 146.6 bits;  conditional E-value: 9.9e-47
   TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGke.akeaaaedpkntiisvkRlmGrsledv..kkeaeelpyeledakge.....mvrlkt..aqg..evtPve.vsaeiLkkl....kkraeealgkel........kgavitvPAYFddaqrqatkdAarlagl.nvlRLlnePtaAAvAYGldk........aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil........kkagleaelskeekkellkaaraakeaLt....daeevevevklegkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepl.tdldPdevvAlGAalqadlLa 363
                 +vG+D+G  n +++a  +g + v+ + + + l p++v++ e    ++G++ a ++++++ k+ti  +kRl+G s ed   +ke+++ py+ +  +++      +++k+  ++g  ++ P+e v   +++++     k+a+ea g+++        +  vi +P Y+ daqr+a+ +  ++ g+  v RL+ e ta A+AYG+ k        ++ + ++  D+G   F v i  +e G   v++   d  +GG DfD+++ +++         kk+    + +++ + ++++aa++ak++L+    +++++++e+ +e+ d+++ l+ e++e++ ++l+ k  e+++++l +a+l+++++++v +vGGstr+  ++++++++ + + l t+++ de v  GAalq+ +L+
  MMETSP1061-20121228|4304_1   3 VVGLDIGLQNCVISAAGRGGVDVILNGNSNRLNPAMVTFDES--RKMGEQvAGSTSISKFKTTIKNMKRLVGLSFEDPraQKEMKRVPYKCVPLPHAsggpaSIAVKVpnSEGvdNIIPIEqVLGMVIHHMgmiaAKKASEASGSNItdpaalfpQDWVIAIPPYYTDAQRRAVLNGCKIVGIpGVQRLMHENTATALAYGIFKdirkeftkEKPTNVMFIDMGASAFTVTIAAFEPGKLTVKSCNFDDSVGGRDFDELIGNWVAekfvekygKKLSCAPQSKPKVMLKIMAAAEKAKKTLSpqgvKEASINLECLMEDLDFNIMLKAEDYEAMSAPLLAKLEEPIKKTLAEAKLTAADLSSVEIVGGSTRIGFLKKKMKDILGVSTLsTTMNADEAVSRGAALQSAILS 410
                 59**************999999999999***********988..788887245677888999**************97224667899**98654432111224444441155566899**86667777766222246677777777622222233467*************************5599**************98877777765566788999******************************************99777755555555556667777888999*********9332233455556666999****************************************************************99994579**************9986 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.34
   TIGR01991 452 arirvtfqvDadGllsvsaqekltgvea 479
                  +irv+ + D  G++++s   ++ ++e+
  MMETSP1061-20121228|4304_1 513 KKIRVNVKQDIHGIVQMSSAQMVEEIEE 540
                 5799999999999999988888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.28
# Mc/sec: 3917.25
//
Query:       MMETSP1061-20121228|4311_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.3   0.1      0.045   10.5   0.1    1.3  1  TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase


Domain annotation for each model (and alignments):
>> TIGR00113  queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   1.1e-05     0.045     238     270 ..      59      91 ..      43     106 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.1e-05
   TIGR00113 238 tvevlektkesGkrilavGttsvrsleslaqee 270
                   + l+k k++G+ ilavGtt+ r    +a ++
  MMETSP1061-20121228|4311_1  59 IEAQLRKLKKNGGHILAVGTTAGRGKSVAAASA 91 
                 4456899***************99766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1872.60
//
Query:       MMETSP1061-20121228|4315_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 361.23
//
Query:       MMETSP1061-20121228|4316_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.9e-160  531.3   2.0   4.6e-160  531.1   1.4    1.0  1  TIGR01064 pyruv_kin: pyruvate kinase
    0.00054   17.3   0.1     0.0035   14.6   0.0    2.2  2  TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
    0.00094   16.6   0.1     0.0065   13.9   0.0    2.1  2  TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  531.1   1.4  3.3e-163  4.6e-160       1     474 [.      66     542 ..      66     544 .] 0.96

  Alignments for each domain:
  == domain 1    score: 531.1 bits;  conditional E-value: 3.3e-163
   TIGR01064   1 rrtkIvaTiGPateskevlkklldaGvnvvRlNfSHgsheehkkvienvrevaeklgkpvaillDtkGpeiRvgeikk.eevklkkgekvilttdekkeegseekvsvdykslvkdvkeGdkilvdDGkislkVveveedk..vivevknggelkskkgvnlpgaevslpalsekDkkdl.kfgveqgvdlvaaSFvrkaedvkevrevleekgakdvkiiaKiEnqegvknideIikasdgimvARGDLGveipaeevpllQkklikkcreagkpvitATqmLdSmiknprPTRAEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekalekktelkerknskakk...ssieeavalaaveaaekakakaivvltesgrtarllskyrpkapiiavtrnervarql.alsrGvfpvlvdeeeeelekalkkalellkekgilkkgdlvvviqagavlekeketntikve 474
                 r tkI +T+GPa  +++ l+ l++aG+nv+R+NfSHg+h  hk  ++++r++a ++gkpv++llDtkGpeiR+g +++ ++++l kge+++lt+d  + +g+++k++ +y +l++ v++G++ilv DG + lkV + + +k  v +e++n+  + ++k +nlpg+ v+lp+l+ekD+ d+ + g+ +++d++aaSFvrka+dv ++re+l  +++  +kii KiEnqeg++n deI++++dgimvARGDLG+eip e+v+l+Qk++i+k++ +gkpv+tATqmL+Smi+nprPTRAE sDvanAvldGtdavMLSgEta+G+YP +aV++ma+++ eae+a++++t + +++ns+ +k    s+ e++a +av++a    akai+v +esg ta+ ++k+r+  p+ ++t++e+varq+    +G  ++++ + ee+ +  +++ ++   ++gi + gd vvv+q+    + +++tnt++++
  MMETSP1061-20121228|4316_1  66 RATKIFCTLGPACWEVDQLETLIKAGLNVARFNFSHGDHAGHKACLDRLRQAATNVGKPVGVLLDTKGPEIRTGFFAEgKKIELVKGETLVLTSDY-EFKGDNTKLACSYGELATSVTPGQSILVADGSLVLKVISCDVEKgeVPCEIMNNAAIGERKNMNLPGVVVNLPTLTEKDISDItEWGIPNEIDFIAASFVRKASDVLKIREILGPENQ-GIKIICKIENQEGLENYDEILEVTDGIMVARGDLGMEIPPEKVFLAQKMMIRKANIVGKPVVTATQMLESMITNPRPTRAECSDVANAVLDGTDAVMLSGETANGEYPEAAVSIMAETCVEAEAAINNNTLYASIRNSTLDKfgsLSTSESIASSAVKTAIDIGAKAIIVCSESGATAQQIAKFRAGRPVTVLTTSEQVARQAfGYMKGCKATVIPSVEET-DVHVSNCIAGFVSEGICAAGDAVVVVQG--SNKVVGSTNTMRIQ 542
                 68**************************************************************************99899************876.899**********************************987777667************************************9569******************************65.**********************************************************************************************************************************9999998887653326899*************99************************************98636889*******887777.9999************************..5578899****996 PP

>> TIGR02311  HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   2.6e-06    0.0035     120     176 ..     261     315 ..     248     321 .. 0.86
   2 ?   -0.8   0.0      0.13   1.8e+02      76     101 ..     435     459 ..     427     488 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 2.6e-06
   TIGR02311 120 larasrfnripdylqqadeeiclllqvetrealenleeiaaveGvdGvfiGPadlaa 176
                 + +as   +i + l   ++ i ++ ++e++e+len +ei++v   dG+++   dl  
  MMETSP1061-20121228|4316_1 261 VRKASDVLKIREILGPENQGIKIICKIENQEGLENYDEILEV--TDGIMVARGDLGM 315
                 45689999999****************************988..59****9999975 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.13
   TIGR02311  76 likrlldiGaqtllvPmvesaeqaea 101
                  +k  +diGa++++v   es + a++
  MMETSP1061-20121228|4316_1 435 AVKTAIDIGAKAIIVCS-ESGATAQQ 459
                 57788888888877653.34444444 PP

>> TIGR03239  GarL: 2-dehydro-3-deoxyglucarate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0     0.099   1.4e+02     181     211 ..     100     130 ..      89     162 .. 0.77
   2 !   13.9   0.0   4.7e-06    0.0065     129     174 ..     271     314 ..     253     340 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.099
   TIGR03239 181 gnpnhpdvqkairhifdraaahgkavgilap 211
                  + +h   ++++ ++ ++a++ gk+vg+l  
  MMETSP1061-20121228|4316_1 100 SHGDHAGHKACLDRLRQAATNVGKPVGVLLD 130
                 5567888888999999***********9965 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 4.7e-06
   TIGR03239 129 adyfkkindnitvlvqiesrkgvdavdeiaavdgvdgvfvgpsdla 174
                  + +   n+ i ++ +ie ++g+++ dei  v   dg++v  +dl 
  MMETSP1061-20121228|4316_1 271 REILGPENQGIKIICKIENQEGLENYDEILEV--TDGIMVARGDLG 314
                 5566667999*******************866..699**9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 2316.20
//
Query:       MMETSP1061-20121228|4324_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 503.96
//
Query:       MMETSP1061-20121228|4330_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-06   21.8  30.5    9.5e-06   21.4  21.1    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00065   15.3  26.2    0.00089   14.8  18.2    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        1.9    4.3   6.3        2.8    3.8   4.3    1.2  1  TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4  21.1   6.9e-09   9.5e-06     679     874 ..      34     228 ..      24     252 .. 0.65

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 6.9e-09
   TIGR02168 679 keieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleele 874
                 ke+++ e ++ +le +i e+e+ l++l+++ ++ +++ + + ++ e++++ +s+    le + +e+ +l+ + ++l +ele+l+++ +++ee+ ++  + lkea+e   el+++i +++++l++l+e+++++e++ +++++ ++++++++ ++e++++ +e++   l+++i+ l+ee e l+++  ++e++  + e
  MMETSP1061-20121228|4330_1  34 KEVDTWEHKCGQLEHQIIEKEEYLEKLASAASANNNANNRVGAAGESSHEGISDDMVLLELHYAESAALK-NERKLMEELERLRDQVKTQEERHQKDVQDLKEANESHLELKEQISAQERNLTDLQEKYDNQERATEQQERIIQHLKTQVGDNEQRANLAEQQCAGLKDTIRILQEEYETLKSSNLKIEQQSIKKE 228
                 5778888888888888888888888888888888888888888888877777777666666666666655.34456666777777777777766666666666666666666666666666666666666666666666666666666666666666666666666666666666666655555555444433333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8  18.2   6.5e-07   0.00089     308     511 ..      26     228 ..      15     238 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.5e-07
   TIGR02169 308 eraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesresk 511
                 +++ a+  +e+   e++  ++e +i +++e +e+l+ +  +++   +++ ++ ++++e  ++ +  le   +e+a+l++e  +l e+le+l+++ +  +  +++  + lk+++e   elk+++ + e ++++l+e+ ++ + + +++e+ +++lk ++ + e++    +++ + l++ ++ l++e++ l+ ++  +e++s++++
  MMETSP1061-20121228|4330_1  26 HDSNAALWKEVDTWEHKCGQLEHQIIEKEEYLEKLASAASANNNANNRVGAAGESSHEGISDDMVLLELHYAESAALKNER-KLMEELERLRDQVKTQEERHQKDVQDLKEANESHLELKEQISAQERNLTDLQEKYDNQERATEQQERIIQHLKTQVGDNEQRANLAEQQCAGLKDTIRILQEEYETLKSSNLKIEQQSIKKE 228
                 556667778888889999999999999999999999999999999999999999999999999998888888888777765.56778888888888888777888888899999999999999999999999999999999999999999999999999999999999999999999999999999999999988888875544 PP

>> TIGR01667  YCCS_YHJK: integral membrane protein, YccS/YhfK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   4.3     0.002       2.8     280     382 ..     114     217 ..      82     221 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.002
   TIGR01667 280 elaraillrkPydyakrvelalekllaaleklrdnqapkdllkslgalldnlraidwklariaretavaeel.yaedeladkqrrglkdilerlkshl.tlespl 382
                  l ++++  +  +++k v+   e  ++ le   +  a++ +l +l+   dn +    +  ri ++ +++     ++++la++q  glkd +  l++ + tl+s  
  MMETSP1061-20121228|4330_1 114 RLRDQVK-TQEERHQKDVQDLKEANESHLELKEQISAQERNLTDLQEKYDNQERATEQQERIIQHLKTQVGDnEQRANLAEQQCAGLKDTIRILQEEYeTLKSSN 217
                 5555555.55667777777666667777888889999999*******999998777777777776666554427899**************99986543788765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       426  (0.103852); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.56
# Mc/sec: 1326.84
//
Query:       MMETSP1061-20121228|4333_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 533.70
//
Query:       MMETSP1061-20121228|4331_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 2160.94
//
Query:       MMETSP1061-20121228|4332_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 1552.44
//
Query:       MMETSP1061-20121228|4335_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00086   16.7   0.0     0.0013   16.1   0.0    1.2  1  TIGR00036 dapB: dihydrodipicolinate reductase


Domain annotation for each model (and alignments):
>> TIGR00036  dapB: dihydrodipicolinate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.2e-07    0.0013       3      74 ..      11      83 ..      10      94 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.2e-07
   TIGR00036  3 kvavaGaaGrmGrevikavkeaedlelvaalerkgs.skqgkDiGelagigkvgvpveddleavkvlaekkad 74
                kv+v+Ga+G+ G+ + +++ + ed++ v+ + +++s +   +D G+ a+   +  +v+d+      l  +++d
  MMETSP1061-20121228|4335_1 11 KVVVSGAGGQTGKSLFRKLLADEDFDPVGLVRTQTSkDALLEDCGDSASSRLIVCDVTDEDAVLAALDWNTVD 83
                89*************************99998766514567999*9999999999998887766555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 1229.15
//
Query:       MMETSP1061-20121228|4329_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 2063.20
//
Query:       MMETSP1061-20121228|4336_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-37  127.6   0.3    1.3e-33  114.1   0.1    2.0  2  TIGR01123 ilvE_II: branched-chain amino acid aminotransferase
    2.1e-16   57.7   0.0    1.9e-15   54.6   0.0    1.9  2  TIGR01122 ilvE_I: branched-chain amino acid aminotransferase
     0.0001   19.4   0.0    0.00018   18.6   0.0    1.4  2  TIGR01121 D_amino_aminoT: D-amino-acid transaminase


Domain annotation for each model (and alignments):
>> TIGR01123  ilvE_II: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.1   0.1   9.7e-37   1.3e-33     143     282 ..      22     168 ..      18     176 .. 0.90
   2 !   11.7   0.0   1.4e-05      0.02     273     310 ..     184     226 ..     180     229 .. 0.75

  Alignments for each domain:
  == domain 1    score: 114.1 bits;  conditional E-value: 9.7e-37
   TIGR01123 143 yvRaapkGtGavkvgGnYaasllaqkkaaeqglddvvyldpvekkkieevGaaniflitkdgelvttpl.sesiLegvtresllelakd.lgleveer.eiaidelka.aveaGei...vfacGtaavitPvgelkiegkevevkse 282
                 + Raa +G G+vk +GnYa ++  qk  +e+g+d+++ ld+ + + +ee+Ga+n+f++  + ++vt++l s+ iL+gvtr+s+lela++  g  v e  +++i +l a   e+G+    +f cGt a itPvg++  ++ + + k++
  MMETSP1061-20121228|4336_1  22 FGRAAAGGAGNVKAAGNYAPAFAVQKRVREEGCDEILCLDASTGEIVEEAGASNFFVVFPNRTIVTPSLdSGTILPGVTRASVLELAREeCGCDVLETpNLKISDLVAaEHEHGNCaseAFCCGTGACITPVGSIYLGDANANAKAD 168
                 67**********************************************************9888887755999***************99*****986589**88765156889877889***************999988777665 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 1.4e-05
   TIGR01123 273 egkevevkse.evGevtkklrdeltdiqyGkl....edkegWi 310
                 +g+ v++ ++  +G++t+kl++ ltd+q+G+     ++ ++Wi
  MMETSP1061-20121228|4336_1 184 NGRVVTFGDGtSPGPITEKLYQLLTDLQLGTNpmlnKKYKDWI 226
                 567778888879******************8622213455666 PP

>> TIGR01122  ilvE_I: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.0   1.4e-18   1.9e-15     148     259 ..      31     156 ..      21     167 .. 0.83
   2 ?    0.9   0.0     0.031        43     265     296 ..     191     227 ..     186     229 .. 0.69

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 1.4e-18
   TIGR01122 148 tkakaagnYlnsllaksealraGydeailLde.eGyvaeGsG.enifiv.kdgvlltPpvse.siLkgitrdaviklak.elgievkeer.isreely........taDevfltGtaaevtPirev 259
                  ++kaagnY  +  +++  +++G de + Ld   G ++e +G  n+f+v  + +++tP++ + +iL g+tr +v++la+ e g +v e++ +  ++l          a e+f  Gt a +tP+ ++
  MMETSP1061-20121228|4336_1  31 GNVKAAGNYAPAFAVQKRVREEGCDEILCLDAsTGEIVEEAGaSNFFVVfPNRTIVTPSLDSgTILPGVTRASVLELAReECGCDVLETPnLKISDLVaaehehgnCASEAFCCGTGACITPVGSI 156
                 689***************************963799999998458888846999*****965379*************96789***99876777777511111122567**************887 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.031
   TIGR01122 265 gegk.rGpvtkklqeaffdlvegkt....ekkeewlt 296
                 g+g+  Gp+t+kl +   dl  g++    +k+++w++
  MMETSP1061-20121228|4336_1 191 GDGTsPGPITEKLYQLLTDLQLGTNpmlnKKYKDWIH 227
                 555426************9998864112256677766 PP

>> TIGR01121  D_amino_aminoT: D-amino-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.4e-07   0.00018     156     250 ..      47     156 ..      36     168 .. 0.67
   2 ?   -4.0   0.0         1   1.4e+03     256     269 ..     191     205 ..     188     208 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.4e-07
   TIGR01121 156 qkasekgafeailh...rdelvtegsssnvyaik.dgvlythpann.lilnGitrkvilklaeen.glpvkeea........ltkeel.keadevfvssttaevtPvvei 250
                 ++  e+g+ e + +    +e+v e+ +sn +++  + ++ t + +   il G+tr  +l+la+e+ g +v e++         +++e  + a e f   t a +tPv +i
  MMETSP1061-20121228|4336_1  47 KRVREEGCDEILCLdasTGEIVEEAGASNFFVVFpNRTIVTPSLDSgTILPGVTRASVLELAREEcGCDVLETPnlkisdlvAAEHEHgNCASEAFCCGTGACITPVGSI 156
                 556677777766432226899**********99725577787776448************99764366666654211111103333331346788888888888888665 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 1
   TIGR01121 256 gdG.kvGpltkklqk 269
                 gdG  +Gp+t+kl +
  MMETSP1061-20121228|4336_1 191 GDGtSPGPITEKLYQ 205
                 566247999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 1020.72
//
Query:       MMETSP1061-20121228|4337_1  [L=831]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (831 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.11s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 2611.50
//
Query:       MMETSP1061-20121228|4342_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.52
# Mc/sec: 1421.42
//
Query:       MMETSP1061-20121228|4341_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 496.53
//
Query:       MMETSP1061-20121228|4344_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 603.38
//
Query:       MMETSP1061-20121228|4340_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   18.1   0.0      0.059   10.5   0.0    2.4  2  TIGR02065 ECX1: exosome complex exonuclease 1


Domain annotation for each model (and alignments):
>> TIGR02065  ECX1: exosome complex exonuclease 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   1.4e-05     0.059       6      75 ..      59     126 ..      54     138 .. 0.76
   2 !    5.0   0.0   0.00072         3     150     228 ..     299     377 ..     286     378 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.4e-05
   TIGR02065   6 dglredGrkpdelrpvkievGvlkradGsallelGatkivaavyGPreahprhlqkpdravlrvrynmap 75 
                   lr dGr+ +++r+v++++G  ++    + +++Ga + v+++    e+ p    +p+ +++ +  +++p
  MMETSP1061-20121228|4340_1  59 RMLRCDGRRGNDVRNVRMQLGRWDNGA-ECTVQWGAGTRVTSLC-SAELVPPSPDRPNEGIMNFTVDISP 126
                 5689*****************998864.5678999988877654.4567777777777777776666666 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.00072
   TIGR02065 150 lvvgvavGkvdgkvvldlseeedkyGeadlPlailPklkeitllqldG..dltedefkqaldlavkgikkvyeierealkk 228
                  v + +   v    ++d ++ e+    + l +a+     e+ ll   G  +lt+++++   ++a  +ik++ ++   al k
  MMETSP1061-20121228|4340_1 299 AVNSTSSSSVVAA-LIDPTDREELVQSGSLTIAMN-VHSEVCLLDYGGgcELTPNKLRACWKVAEAAIKNLCQMLETALAK 377
                 5555555555443.579999999999999999965.56899***99885579**********************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.44
# Mc/sec: 1637.86
//
Query:       MMETSP1061-20121228|4347_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.37
# Mc/sec: 317.49
//
Query:       MMETSP1061-20121228|4350_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|4346_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.3    7.5   1.9       0.56    6.6   1.3    1.4  1  TIGR00437 feoB: ferrous iron transport protein B
        5.9    2.3  19.0      0.033    9.7   7.3    1.5  2  TIGR02102 pullulan_Gpos: pullulanase, extracellular


Domain annotation for each model (and alignments):
>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   1.3   0.00027      0.56     144     240 ..      81     179 ..      35     225 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00027
   TIGR00437 144 eelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqkl.kkglevleglleeraleiekiekelaevvkkeses.klsateiadeekvlve 240
                 e+ +++ +e+++++ ++++++a+ ++++ ++ +e++e+ +e+ q+  +++ e  ++  +e  +e+ + +   +++v  ++ s +++ te++d+ k  v+
  MMETSP1061-20121228|4346_1  81 ENHEEEGQEQENEEEEHQEEEAEGEQQQQQQENEEEEEEEEQGQQQqQNNYEQQQEEYDEAEYEYGNDDGYSNQIVDDDAASgQVNVTEMVDNVKTSVS 179
                 222222222333333444444444444444444444333333333324444555555555555555555555555554443314455555555444443 PP

>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   7.3   1.6e-05     0.033     982    1074 ..      32     133 ..      11     146 .. 0.50
   2 ?   -5.4   0.9      0.57   1.2e+03    1024    1083 ..     435     495 ..     424     499 .. 0.40

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1.6e-05
   TIGR02102  982 pkGveltkeglkldpltavvvkvgekease.........ktapkkeeeseadk.ekkedkdeskdkdkvaeaenkesktpagskkeneeveksskekkeekld 1074
                     +++++++l++dpl+   ++ g++  ++         +  ++ e+++++++ e+ +++++++++++++eae+++ ++  ++++e+ee e++++++++++ +
  MMETSP1061-20121228|4346_1   32 SGALQVEAKSLQVDPLAVSSLRGGKRTYAQsrlrdrgleE-GQEGENNENENHeEEGQEQENEEEEHQEEEAEGEQQQQQQENEEEEEEEEQGQQQQQNNYEQ 133 
                  346899******************9877776565544421.22222111111101222222222222223333333333333333333333333333333333 PP

  == domain 2    score: -5.4 bits;  conditional E-value: 0.57
   TIGR02102 1024 dkekkedkdeskdkdkvaeaenkes.ktpagskkeneeveksskekkeekldkeaklpkta 1083
                  ++e+ ed + ++d++ +  ++++ s ++ ++skk+ +++   s+ kk+ + +    l +t+
  MMETSP1061-20121228|4346_1  435 NQEEDEDINLTDDEKTKRASRSRGSsMSVSSSKKKVGSSMSVSSSKKKVRSQSSGALSRTG 495 
                  2333333332222222222222222022233333334444444444444444555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       413  (0.100683); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.75
# Mc/sec: 1062.95
//
Query:       MMETSP1061-20121228|4353_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1225.61
//
Query:       MMETSP1061-20121228|4351_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1872.82
//
Query:       MMETSP1061-20121228|4356_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1755.46
//
Query:       MMETSP1061-20121228|4360_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 755.52
//
Query:       MMETSP1061-20121228|4358_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1634.63
//
Query:       MMETSP1061-20121228|4364_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 338.58
//
Query:       MMETSP1061-20121228|4365_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.38
# Mc/sec: 587.00
//
Query:       MMETSP1061-20121228|4366_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 2712.16
//
Query:       MMETSP1061-20121228|4361_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       319  (0.0777669); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.19s 00:00:00.67 Elapsed: 00:00:00.50
# Mc/sec: 1969.28
//
Query:       MMETSP1061-20121228|4362_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-177  587.5   0.2   3.6e-177  587.0   0.1    1.2  1  TIGR00263 trpB: tryptophan synthase, beta subunit
    2.8e-70  233.9   0.1    4.3e-70  233.3   0.1    1.3  1  TIGR00262 trpA: tryptophan synthase, alpha subunit
    5.5e-51  171.4   0.1    1.5e-50  170.0   0.1    1.7  1  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
    8.4e-14   49.0   0.0    1.4e-13   48.2   0.0    1.3  1  TIGR02079 THD1: threonine dehydratase
    3.3e-12   44.1   0.1    1.3e-06   25.7   0.0    2.6  2  TIGR01139 cysK: cysteine synthase A
    6.3e-11   40.0   0.0    3.9e-06   24.3   0.0    3.1  3  TIGR01136 cysKM: cysteine synthases
    3.4e-08   30.7   0.2    8.6e-06   22.8   0.0    3.3  4  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    1.9e-07   28.7   0.0    2.5e-05   21.8   0.1    2.8  3  TIGR01138 cysM: cysteine synthase B
    1.3e-06   25.8   0.0    3.9e-06   24.2   0.0    1.9  1  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
    2.2e-06   24.7   0.2    1.4e-05   22.1   0.1    2.3  2  TIGR01127 ilvA_1Cterm: threonine dehydratase
    4.3e-06   23.8   0.0    8.4e-06   22.8   0.0    1.4  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    0.00012   19.5   0.1    0.00035   18.0   0.0    1.8  2  TIGR01768 GGGP-family: geranylgeranylglyceryl phosphate synthase family protein
    0.00023   17.7   1.4    0.00037   17.0   0.0    1.8  2  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic


Domain annotation for each model (and alignments):
>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  587.0   0.1  1.1e-179  3.6e-177       1     383 [.     373     757 ..     373     759 .. 0.99

  Alignments for each domain:
  == domain 1    score: 587.0 bits;  conditional E-value: 1.1e-179
   TIGR00263   1 gkfgefGGqyvpevllealeelekayekakkdeefkkeleellkeyagrptpltfaknlskklggakiylkredllhtGahkinnalgqallakrlGkkriiaetGaGqhGvatataaallglecevymGaedverqklnvfrmellgakvvpvtsGsktlkdavnealrdWvtsvedthyvlGsavGphPfPeivrefqsvigeevkeqileke.grlPdaviacvGGGsnaiGifaafiedeeveligveagGkGidt.ekhaatlskGkeGvlhGaktkllqdedGqieeahsvsaGldypgvgPehaalaetgraeyeaitdeealealkllskeeGiipalesshalaaleklapklkkdeivvvnlsGrGdkdletvak 383
                 ++fgefGGqy+pe+l  a+ee+e+ y+++k+d++f +el+++ ++++g ptpl  a++l++  gga i+lkredl htGahkinna+gqallakr+Gk riiaetGaGqhGvatat++a+lgl+c+vymGa d erqklnvfrm+ lgakvvpv++G++tlkda+nea+ dWvt+v+dthy++GsavGphPfP+ivr+fqsvig+e+keq ++k+ grlPda++acvGGGsnaiG+fa+f +de v+++g ea+GkGi+  e+h+atl+ G++Gvl+Ga+t+++q+e+Gq  ++ s+saGldypgvgPeha+++ +gra+y+ +tde+ale++k++++ eGiipale+sha+ ++++la++l   + +v+n+sGrGdkd+ ++a+
  MMETSP1061-20121228|4362_1 373 ARFGEFGGQYIPETLSVAFEEIEESYDEIKNDPDFLAELDRYRRDFVGGPTPLHKAERLTEIAGGATIWLKREDLAHTGAHKINNAIGQALLAKRIGKPRIIAETGAGQHGVATATVCAMLGLDCTVYMGAVDCERQKLNVFRMNTLGAKVVPVENGQRTLKDAINEAMADWVTNVRDTHYLIGSAVGPHPFPTIVRDFQSVIGNEIKEQFKAKNdGRLPDALVACVGGGSNAIGTFAPFEKDEGVAFYGAEAAGKGIEFdEEHCATLTVGTPGVLQGARTYIIQKESGQTLNTQSISAGLDYPGVGPEHAYYKASGRATYVGVTDEQALEGFKMMCEYEGIIPALETSHAIYYAMQLAKELGPGKDIVINMSGRGDKDMPQIAR 757
                 58*****************************************************************************************************************************************************************************************************************99988******************************************96489***********************************************************************************************************************987 PP

>> TIGR00262  trpA: tryptophan synthase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.3   0.1   1.4e-72   4.3e-70       3     252 ..      89     340 ..      87     344 .. 0.94

  Alignments for each domain:
  == domain 1    score: 233.3 bits;  conditional E-value: 1.4e-72
   TIGR00262   3 tlkkkeekafvpFvtagdPdleksleiiktlvkaGadalElGvpfsDPlaDGptiqaaelRAlkagvk.vekalellkkvrekasniPivlltyynlifkkgveeFyakakeagvdgvlvaDlPleeaddlleaakkhgvkqiflvaPtaeeerlkkiaekseGfvYlvsvaGvtgarerveeevkelikkvkalskkPvlvGFGiskkeqvkelkelgadgvivGsAlvkiieekld..deekaleeleefv 252
                   k+k+e afv+F+tag+P+ e +  i+  +++ Ga+++ElGvp+ DP aDG ti aa++ A+++g++ ++ +l++++k re   ++P+vl+ y n+  ++g++   ++akeag dg +v+DlP ee   l +a+ khg++++ lvaPt++++r+ ++a+ ++ f Y+vsv+Gvtgar+++  +++e++ +v++ ++ P +vGFGis +e v+ + ++ adgv+vGs +++ ++e  d  + e+  e++++++
  MMETSP1061-20121228|4362_1  89 SAKAKGEAAFVAFITAGYPKKEDTPAILLAMQEGGASVIELGVPYTDPQADGATITAANQVAIANGTSdIDTCLDMVRKAREMGLTVPVVLMGYVNPFIQYGEDRLCENAKEAGADGFIVVDLPPEEGIALNKACVKHGLSNVPLVAPTSSDKRIAALADMATTFLYCVSVTGVTGARTELPPDLEEFLLRVRKATDLPLAVGFGISSPEMVNGVANM-ADGVVVGSSILNAMKELGDdaTTEEKAEAVRKVI 340
                 57899************************************************************9753899**************************************************************************************************************************************************.99************99977554555556666555 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.0   0.1   4.8e-53   1.5e-50      59     412 ..     411     755 ..     361     762 .. 0.84

  Alignments for each domain:
  == domain 1    score: 170.0 bits;  conditional E-value: 4.8e-53
   TIGR01415  59 lkayak..igrPtPlirakkleellgtkariyyksesvsptGshkintaiaqayyakkeGvkrlvtetGaGqWGsalslaaalldlkvkvfmvrvsfkqkpyrkllmelygaevipsPseltevGrkvlkedpehPGslGlaiseaieealee.edakyslGsvlnh......vllhqtviGleakkqleea..gekPdvivgcvGGGsnfaglafPfvadk...lsGk.edlkfiaaeskaaPkltkGeyrydfgdsagllPllkmytlGhdfvppavhagGlryhgvaPtlsllvkkGlveaeaydqeevfeaavlfakaeGivPaPesahaiavaideakkareegkekvilfslsGhGlldlkay 412
                 l++y +  +g PtPl++a++l e+ g+ a i++k+e+ + tG+hkin ai qa  ak+ G  r+++etGaGq G a ++ +a+l+l+++v+m +v  +++    + m++ ga+v+p      e G+++lk+          ai ea+ + + +  d++y++Gs +        v  +q+viG e+k+q++ +  g  Pd +v+cvGGGsn  g+  Pf +d+   + G     k i  + + + +lt G      g  + ++ +    tl      +++ ++Gl y gv P  +     G      +  e+++e  +++++ eGi+Pa e++hai  a++ ak++  +   k i++++sG G  d+ + 
  MMETSP1061-20121228|4362_1 411 LDRYRRdfVGGPTPLHKAERLTEIAGG-ATIWLKREDLAHTGAHKINNAIGQALLAKRIGKPRIIAETGAGQHGVATATVCAMLGLDCTVYMGAVDCERQKLNVFRMNTLGAKVVP-----VENGQRTLKD----------AINEAMADWVTNvRDTHYLIGSAVGPhpfptiVRDFQSVIGNEIKEQFKAKndGRLPDALVACVGGGSNAIGTFAPFEKDEgvaFYGAeAAGKGIEFDEEHCATLTVGTPGVLQGARTYIIQKESGQTLN-----TQSISAGLDYPGVGPEHAYYKASGRATYVGVTDEQALEGFKMMCEYEGIIPALETSHAIYYAMQLAKELGPG---KDIVINMSGRGDKDMPQI 755
                 3455433389*************9876.78*************************************************************************************9.....588***9997..........8999998876653799******98631232224459***********987522678***********************983333666367799**************8877777777776666655554.....4455789*********************************************************99887555...899********9888665 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   4.6e-16   1.4e-13      16     187 ..     422     609 ..     411     629 .. 0.77

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 4.6e-16
   TIGR02079  16 etPlqknerlseky.kaeiylkredlqevrsyklrGaynklkqlsdeelekgvvcasaGnhaqGvayacrklgvkgtvfmPvt.tPkqkvd..kvklfGgefievilvGdtfdeaaaaakka....vekeg...ktlipPfddkdiieG.qgtvaveileqleee....kidlvlvpvGGGGlisGvt 187
                 +tPl+k erl+e+  +a+i+lkredl +  ++k+  a  +       ++ + +  + aG h    a  c  lg+  tv+m ++   +qk++  ++   G + + v     t  +a  +a+ +    v++++      + P   ++i+   q+ ++ ei eq++ +     +d +++ vGGG  + G  
  MMETSP1061-20121228|4362_1 422 PTPLHKAERLTEIAgGATIWLKREDLAHTGAHKINNAIGQALLAKRIGKPRIIAETGAGQHGVATATVCAMLGLDCTVYMGAVdCERQKLNvfRMNTLGAKVVPVENGQRTLKDAINEAMADwvtnVRDTHyliGSAVGPHPFPTIVRDfQSVIGNEIKEQFKAKndgrLPDALVACVGGGSNAIGTF 609
                 7***********87369*******************998876666778888888999***********************8762678998833455689*****9988888877777766542111444431112347788888888643999******998765445669**********8777654 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.2e-09   1.3e-06       6     180 ..     421     608 ..     417     628 .. 0.73
   2 !   15.4   0.0   5.5e-06    0.0017     235     290 ..     694     749 ..     688     753 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4.2e-09
   TIGR01139   6 GntPlvrLnlaeea..kaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpetmslerrkl....lkayGaelv.Ltdgaegmkgaiekae.e.lveetpnkylllkqfenpanpei...hrkttapeilkdldgk.....ldafvagvGtGGtitGv 180
                 G tPl + ++ +e+   a + +k e l  +++ k     + i +a  ++ + k + i e+ +G  G+a a v+a  g+  ++ m + +  er+kl    ++++Ga++v + +g++  k ai++a  + +++ +  +yl+ +       p+i    ++  ++ei ++++ k      da+va vG G    G+
  MMETSP1061-20121228|4362_1 421 GPTPLHKAERLTEIagGATIWLKREDLAHTGAHKIN---NAIGQALLAKRIGKPRIIAETGAGQHGVATATVCAMLGLDCTVYMGA-VDCERQKLnvfrMNTLGAKVVpVENGQRTLKDAINEAMaDwVTNVRDTHYLIGSAVGPHPFPTIvrdFQSVIGNEIKEQFKAKndgrlPDALVACVGGGSNAIGT 608
                 567777777443330145666666666665555543...4577888899999999****************************975.789999976667889*****9455788999****9985242445555567666666555555551216778999**9998766455555999***9999776665 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 5.5e-06
   TIGR01139 235 ikvsdeeaietarrlakeeGilvGissGaavaaalkvakklekdkkivvilpdtge 290
                 + v+de+a+e  + + + eGi+  + +  a++ a+++ak+l+++k iv+ ++  g+
  MMETSP1061-20121228|4362_1 694 VGVTDEQALEGFKMMCEYEGIIPALETSHAIYYAMQLAKELGPGKDIVINMSGRGD 749
                 679*********************************************98777665 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.69   2.2e+02      68     119 ..     215     266 ..     205     270 .. 0.87
   2 !   24.3   0.0   1.2e-08   3.9e-06       6     124 ..     421     542 ..     416     620 .. 0.74
   3 !   11.7   0.0   8.1e-05     0.026     233     292 ..     692     750 ..     679     754 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.69
   TIGR01136  68 tGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgai 119
                  GiaL  ++ ++g+  + ++  t s  R ++l  + + ++   + +g +ga+
  MMETSP1061-20121228|4362_1 215 EGIALNKACVKHGLSNVPLVAPTSSDKRIAALADMATTFLYCVSVTGVTGAR 266
                 599**********999988888999999999999999988888888888886 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 1.2e-08
   TIGR01136   6 GntPlvrln.lseelk.aevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkl....lkayGaelvltea.eegmkgaiekake 124
                 G tPl + + l+e +  a++++K E+   +g+ K   a   i +A   + + k + i e+ +G  G+a A v+a+ g+  ++ m + +  ER+kl    ++++Ga++v +e+ ++  k ai++a  
  MMETSP1061-20121228|4362_1 421 GPTPLHKAErLTEIAGgATIWLKREDLAHTGAHKINNA---IGQALLAKRIGKPRIIAETGAGQHGVATATVCAMLGLDCTVYMGA-VDCERQKLnvfrMNTLGAKVVPVENgQRTLKDAINEAMA 542
                 6799999996444333599********99999998766...789999999*9********************************86.778999866666999*****9776515556888887753 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 8.1e-05
   TIGR01136 233 evikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdager 292
                 + + v+de+a+e  + + + egi+  + +  a++ a+++ak+l  ++k+iv+ ++ +g++
  MMETSP1061-20121228|4362_1 692 TYVGVTDEQALEGFKMMCEYEGIIPALETSHAIYYAMQLAKELG-PGKDIVINMSGRGDK 750
                 56789**************************************9.9*****999999887 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.19        60      70     103 ..     216     249 ..     214     263 .. 0.87
   2 !   22.8   0.0   2.7e-08   8.6e-06      21     114 ..     437     530 ..     420     587 .. 0.85
   3 ?   -3.7   0.0       3.3   1.1e+03     165     190 ..     633     658 ..     630     664 .. 0.76
   4 ?    2.8   0.0     0.035        11     227     293 ..     684     750 ..     668     755 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.19
   TIGR03945  70 aiaLamvcaalGlkficvvDpkiseanlkllral 103
                 +iaL   c + Gl+ +++v p  s++ ++ l  +
  MMETSP1061-20121228|4362_1 216 GIALNKACVKHGLSNVPLVAPTSSDKRIAALADM 249
                 89********************999998887655 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 2.7e-08
   TIGR03945  21 kvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkfic...vvDpkiseanlkllralgaevevveekd 114
                  +++++K E l  +g  K   A   + +a+  ++i +   i E   G  ++a a+vca+lGl+ ++    vD + ++ n+  +++lga+v+ ve+ +
  MMETSP1061-20121228|4362_1 437 GATIWLKREDLAHTGAHKINNA---IGQALLAKRIGKPRIIAETGAGQHGVATATVCAMLGLDCTVymgAVDCERQKLNVFRMNTLGAKVVPVENGQ 530
                 357999************9998...67999********************************9875323689999999999999*******998754 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 3.3
   TIGR03945 165 kevdylfvgvsttGtlaGvarrlrek 190
                 +e +   ++v+t G l+G   ++ +k
  MMETSP1061-20121228|4362_1 633 DEEHCATLTVGTPGVLQGARTYIIQK 658
                 5556667899********99998665 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.035
   TIGR03945 227 lldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllakieegstvvailpDrGer 293
                  +++s   ++v v++++++ + + ++e egi+    +  +++ + +l++++ +g+ +v+ ++ rG++
  MMETSP1061-20121228|4362_1 684 YYKASGRATYVGVTDEQALEGFKMMCEYEGIIPALETSHAIYYAMQLAKELGPGKDIVINMSGRGDK 750
                 56777888999*********************99998888888889************999999986 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       1.2   3.8e+02      70     121 ..     215     266 ..     204     272 .. 0.80
   2 !   21.8   0.1     8e-08   2.5e-05       7     114 ..     421     529 ..     416     556 .. 0.80
   3 ?    3.3   0.0     0.033        10     219     283 ..     685     750 ..     640     754 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.2
   TIGR01138  70 tGialamvaalkGyk.vkllmpdnvseerkaalkayGaelilvdkeeGmeGar 121
                  Gial  ++  +G+  v l+ p  +s++r aal    + ++      G+ Gar
  MMETSP1061-20121228|4362_1 215 EGIALNKACVKHGLSnVPLVAP-TSSDKRIAALADMATTFLYCVSVTGVTGAR 266
                 6999999999999861555555.678999999999998888888899999998 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 8e-08
   TIGR01138   7 Gntplvrlkrllpe.edsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaa...lkayGaelilvdke 114
                 G tpl + +rl+    ++++++k e    +G+ k   a+   + a++   i +  ++ e+ +G  G+a a v+a++G+  ++ m +  +e +k     +++ Ga+++ v++ 
  MMETSP1061-20121228|4362_1 421 GPTPLHKAERLTEIaGGATIWLKREDLAHTGAHKINNAIGQALLAKR---IGKPRIIAETGAGQHGVATATVCAMLGLDCTVYMGAVDCERQKLNvfrMNTLGAKVVPVENG 529
                 67********98765789******************99887666665...5567899***************************9866555443234478899998777654 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.033
   TIGR01138 219 fdaslvdrvvdveqedaediarelakkegifvGvssGgavaaalrlarelek.avvvaiicdrGdr 283
                 ++as     v v  e+a +  + + + egi     +  a++ a++la+el     +v  ++ rGd+
  MMETSP1061-20121228|4362_1 685 YKASGRATYVGVTDEQALEGFKMMCEYEGIIPALETSHAIYYAMQLAKELGPgKDIVINMSGRGDK 750
                 5555556677889999999999***************************98734577778899998 PP

>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.3e-08   3.9e-06       2     193 ..     417     605 ..     416     613 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.3e-08
   TIGR01275   2 elillptPiqylkrlsekl.GaeiyikrDDltglelsGnkirkL..efLlaealkkgadtvit.vGaiqsnharatalvakklgLkavllLrkskkvadedeelkGnlLldkllgaevrvvsaeeyeeiealleelkeklekeGkkpyviPvG.GsnslGal.Gyveav..leiaeqlnlesevkfdsivvaaGsgGtia 193
                 +++  ptP++  +rl+e   Ga i++kr+Dl+    +  ki       Lla  + k    +i+  Ga    h  ata+v + lgL++ + +          e  k n++  + lga+v+ v++ + +  +a+ e++++ + +     y i    G  ++ ++   +++v   ei+eq++ +++ ++ +  va+  gG  a
  MMETSP1061-20121228|4362_1 417 DFVGGPTPLHKAERLTEIAgGATIWLKREDLAHT--GAHKINNAigQALLAKRIGK--PRIIAeTGA--GQHGVATATVCAMLGLDCTVYMGAVD-----CERQKLNVFRMNTLGAKVVPVENGQRTLKDAINEAMADWVTNVRDTHYLIGSAvGPHPFPTIvRDFQSVigNEIKEQFKAKNDGRLPDALVACVGGGSNA 605
                 67889**********99762689*******9764..45565544113444444443..444431454..67*****************9998333.....34556688888999***999999999999*********************7543889998862468887446**************99999998888765 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   4.5e-08   1.4e-05       1      98 [.     423     524 ..     423     603 .. 0.81
   2 ?   -0.5   0.0      0.32     1e+02      81     109 ..     609     637 ..     597     643 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.5e-08
   TIGR01127   1 tpleksstlsditg.aevylklenlqktGsfkirGalnkiaklseeekkrGvvaasaGnhaqGvalaakvfgikakivmPesa.plskvk..atksyGaevi 98 
                 tpl+k++ l++i+g a ++lk e l +tG++ki  a+ +   +   +k r +    aG h    a    + g+++++ m  +    +k++    +++Ga+v+
  MMETSP1061-20121228|4362_1 423 TPLHKAERLTEIAGgATIWLKREDLAHTGAHKINNAIGQALLAKRIGKPRIIAETGAGQHGVATATVCAMLGLDCTVYMGAVDcERQKLNvfRMNTLGAKVV 524
                 89*********986378*******************9998777777888877788899998888888899*********98751456655116678999998 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.32
   TIGR01127  81 saplskvkatksyGaeviLhGadfDeayk 109
                 +ap +k + ++ yGae   +G +fDe + 
  MMETSP1061-20121228|4362_1 609 FAPFEKDEGVAFYGAEAAGKGIEFDEEHC 637
                 6899999999***************9875 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   2.7e-08   8.4e-06      20     131 ..     423     538 ..     415     582 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2.7e-08
   TIGR02991  20 tplveseslsellG.vpvllklesrqttGsfklrGatnavlslsdaeraaGvvaastGnhGralayaakkegvravicmsel.vpqnkvdeirr..lGaevrivGrsqddaqeeve 131
                 tpl ++e l+e +G   + lk e    tG+ k+  a+   l  +   + + +  + +G+hG a a   +  g+ +++ m ++    +k++  r+  lGa+v  v + q   ++ ++
  MMETSP1061-20121228|4362_1 423 TPLHKAERLTEIAGgATIWLKREDLAHTGAHKINNAIGQALLAKRIGKPRIIAETGAGQHGVATATVCAMLGLDCTVYMGAVdCERQKLNVFRMntLGAKVVPVENGQRTLKDAIN 538
                 99*********98527899*****************988887788888888888999**********************9983456899988764489999999999876666555 PP

>> TIGR01768  GGGP-family: geranylgeranylglyceryl phosphate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       5.5   1.7e+03      19      33 ..     194     208 ..     191     209 .. 0.81
   2 !   18.0   0.0   1.1e-06   0.00035     134     214 ..     240     319 ..     222     326 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 5.5
   TIGR01768  19 iakavaeaGtDailv 33 
                   +++ eaG+D+++v
  MMETSP1061-20121228|4362_1 194 LCENAKEAGADGFIV 208
                 5688999****9987 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 1.1e-06
   TIGR01768 134 keelaaaaalaeellglriiYlEagsgapepvppelvae...vkkvldkvkLivGGGirsvEkArklaeagADvvvvGnvieed 214
                 ++ +aa+a +a  +l    + +   +ga  ++pp+l ++   v+k +++ +L vG Gi s+E  + +a+ +AD vvvG  i + 
  MMETSP1061-20121228|4362_1 240 DKRIAALADMATTFLYC--VSVTGVTGARTELPPDLEEFllrVRK-ATDLPLAVGFGISSPEMVNGVAN-MADGVVVGSSILNA 319
                 46788888888887654..33344445555577766555111666.56899******************.********988665 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.2      0.48   1.5e+02      75     133 ..     305     361 ..     299     365 .. 0.65
   2 !   17.0   0.0   1.2e-06   0.00037      18     129 ..     423     541 ..     415     613 .. 0.64

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.48
   TIGR01124  75 nhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGenydeakakalelaq 133
                 n a Gv ++++ l     +    +t+e k +av++  ++ +  G + ++ak++a++l q
  MMETSP1061-20121228|4362_1 305 NMADGVVVGSSILNAMKELG-DDATTEEKAEAVRKVIAH-LSTGVQQQDAKNQATKLGQ 361
                 66667777666665444433.345666688888877765.4678888888888877765 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.2e-06
   TIGR01124  18 tplekaaklserl.knrvllkredlqpvfsfklrGaynkmaqlsaeqkakGvia.asaGnhaqGvalsakklGvkavivmpet...tpeikvdavkafGgevvl..hGe.nydeakakal 129
                 tpl+ka++l+e   + +++lkredl    + k+  a  + a l++      +ia + aG h    a  ++ lG+  ++ m +      ++ v  +++ G++vv   +G+ + ++a ++a+
  MMETSP1061-20121228|4362_1 423 TPLHKAERLTEIAgGATIWLKREDLAHTGAHKINNAIGQ-ALLAKRIGKPRIIAeTGAGQHGVATATVCAMLGLDCTVYMGAVdceRQKLNVFRMNTLGAKVVPveNGQrTLKDAINEAM 541
                 9*********9762579*****************99987.445554444444442568888888888899*********98651114566777778899999741134324455544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.21s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2520.99
//
Query:       MMETSP1061-20121228|4363_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|4369_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 2129.82
//
Query:       MMETSP1061-20121228|4371_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 820.47
//
Query:       MMETSP1061-20121228|4376_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.32
# Mc/sec: 391.84
//
Query:       MMETSP1061-20121228|4374_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   18.1   0.0     0.0003   16.9   0.0    1.4  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
    0.00038   17.8   0.0    0.00056   17.3   0.0    1.3  1  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.5e-07    0.0003     180     264 ..      45     117 ..      36     126 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.5e-07
   TIGR04075 180 GPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsmvk..agaalcvpGnheek 264
                  P  ++Gd+hG + +l +++e +G                p     vflGdlvdrG +s+++l l   +      +   ++Gnhe++
  MMETSP1061-20121228|4374_1  45 SPVTVVGDLHGQFFDLLNIFETVGGW--------------PPHTSYVFLGDLVDRGHHSVETLSLLLCLKLkfPAHVTLLRGNHESR 117
                 56666666666666666666666542..............3334579***************9987765440156667789***987 PP

>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.7e-07   0.00056       5      68 ..      49     116 ..      46     184 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.7e-07
   TIGR00668   5 ligdlhgcydelqlllervefdpakdtlyltgdlvargdkslevlryvkslg....davrlvlgnhdl 68 
                 ++gdlhg + +l  ++e v   p +    + gdlv rg++s+e+l ++  l       v l+ gnh+ 
  MMETSP1061-20121228|4374_1  49 VVGDLHGQFFDLLNIFETVGGWPPHTSYVFLGDLVDRGHHSVETLSLLLCLKlkfpAHVTLLRGNHES 116
                 79*****************999999999999************9998766532121445556677765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.48
# Mc/sec: 1039.41
//
Query:       MMETSP1061-20121228|4375_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1785.73
//
Query:       MMETSP1061-20121228|4378_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-12   45.5   6.7    4.8e-12   43.4   4.7    1.8  1  TIGR00820 zip: ZIP zinc/iron transport family


Domain annotation for each model (and alignments):
>> TIGR00820  zip: ZIP zinc/iron transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   4.7   1.2e-15   4.8e-12      28     308 ..     168     421 ..     155     432 .. 0.72

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1.2e-15
   TIGR00820  28 lasvigvllPLlskkvkalrletklflvvkaFaaGvilatgfvHvlpeafealsspcleetewkkfpfagfialisailtllvDllatsyyerkkekgdagseeikvvdgeeeeagadkhakesaedevkeeeeeeqllrqrvvaqvLelGiivHsvviGlslGasqskdtikaLiaaLsFHqlFeGlglGgcisqaefkakkvvilavffavttPlgiaiGlavsssydeespkAliveGlLnalsaGiLiYmaLvdllAadFlskklqsnlrlqllayi 308
                    v+  l+PL sk++     ++ ++ ++ aF+ G+ l+ +f H++pe   + +s  +   + +  p+  +++l + +l + v+ +a +  e         ++e+++++++++++g    a+++     +   e + + ++   a++L   + vHs++  ++lG s+s      L + +  Hq  e ++l    +++ +++ +++ +  +f+   P+g+a+G+av+         A iv+ ++ a+ aG  +Y++  +++  ++   + + +  l l++ i
  MMETSP1061-20121228|4378_1 168 TINVVCWLVPLRSKSFGE---NKLALSLANAFSGGIFLSLAFGHMIPECVHEYASSAVGAYN-EATPY--MLVLSGYLLIFFVEKVAFDAHE--------IMHEMEQGQDDAKQKGS---AVAK----SAPGGEPTATKNTGRSAMILLAALGVHSILEMMALGLSDSFSDSAILTISIALHQPAESIALLVAFLKSGMPKRQIITFLSVFSAMGPIGVALGMAVN------EFAAPIVDAIMLAVVAGTFVYVGATEVIPEEWEDSEHKWKKFLALMSGI 421
                 333444455666666655...55566789****************************99953.33344..4555566666766666644333........34444444444444442...2222....12222333333444445666666678*************************************************99999999*************95......467889999999***********99999888776666555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1692.57
//
Query:       MMETSP1061-20121228|4380_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 269.98
//
Query:       MMETSP1061-20121228|4381_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.41
# Mc/sec: 309.05
//
Query:       MMETSP1061-20121228|4383_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22    9.2   4.4       0.27    9.0   3.1    1.1  1  TIGR00986 3a0801s05tom22: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR00986  3a0801s05tom22: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   3.1   6.5e-05      0.27      28      67 ..       7      52 ..       2      57 .. 0.61

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 6.5e-05
   TIGR00986 28 edqedvdeedssdsDfed......deeetllDrivaLkdivpptkr 67
                 ++++ d++d++d D e+      ++ e llD  +aL+d  +   r
  MMETSP1061-20121228|4383_1  7 VNNKNDDNDDDNDDDNEGekqadpKKVESLLDSATALHDALTEEER 52
                3333334444444444443244445679***********9887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 273.08
//
Query:       MMETSP1061-20121228|4385_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.22    8.0   2.8       0.27    7.7   2.0    1.2  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   2.0   6.5e-05      0.27     272     339 ..      60     135 ..      41     186 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 6.5e-05
   TIGR02031 272 trleekepeqee.ppppPpPp..epe..segeeeedeeeeeeeekeeeqlpeeli...ldAveallpeeiLellqk 339
                    ++++p+ +  p+p P Pp  +++  ++ ++  d++++++++ ++++  ++++   + A++a + e + +++  
  MMETSP1061-20121228|4385_1  60 KPKPNRKPNPNPkPNPIPKPPkrKNPktTKKGPPGDDDHDHDQDVNDNDNDNDFVlygFPAMRACIAEALESVSVV 135
                 3334444433332445555554422212223333344444444444557788888333457777777766555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 1198.90
//
Query:       MMETSP1061-20121228|4379_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-83  276.6   0.5    3.8e-83  276.5   0.4    1.0  1  TIGR01310 L7: 60S ribosomal protein L7
    7.8e-24   82.4   0.0    1.2e-23   81.8   0.0    1.2  1  TIGR01309 L30P_arch: ribosomal protein L30P
  ------ inclusion threshold ------
        1.6    5.7  22.3        2.2    5.2  15.5    1.1  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR01310  L7: 60S ribosomal protein L7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.5   0.4   2.8e-86   3.8e-83       1     236 []       4     240 .]       4     240 .] 0.98

  Alignments for each domain:
  == domain 1    score: 276.5 bits;  conditional E-value: 2.8e-86
   TIGR01310   1 pelllkkrkaeqelkkeaakkkklkkkenkkkkkkkfkRaekfvkeyekaerekirlkreakkkgklyveaekklvFviRikginkldpkvrkvlklLrLkkvnngvFvkvnkatlelLrivePyVayGyPnlksvreLiyKrGfakidgkrvpltdnalieqaLg.kfgvicieDliheiatvGphFkevnnfLwpfkLssPskgfkkkkkkksfkeggdaGnreekINeLikkmv 236
                 pe++lkk+ ++++l+++aa+ +k+++++ +    k     +k+ +eye++++ +++ +r+ak +g +yv+ae+kl+ viRi+gi +++pk +kv++l rL++++n++Fvk+n+at+++Lr++ePyV+yGyP+  +v++L+yKrGf+ki+++r+p+ +n++i + Lg   g+ c  Dli+ei+tvGp+Fk++nnfLwpfkLs+P++gf++k k  +f+egg+aG r+e+IN+L++km+
  MMETSP1061-20121228|4379_1   4 PESVLKKQATQEKLAAAAAEAAKAAEEKAAADAVKFEANSKKYDEEYEATQKLAVENRRKAKSEGGFYVPAEPKLALVIRIRGIIGVSPKAKKVMQLFRLRQLHNATFVKLNEATIRMLRLIEPYVTYGYPSRATVQKLVYKRGFGKINKQRIPIGSNDVIAKGLGvSTGIECAADLINEIYTVGPNFKKANNFLWPFKLSNPKGGFSQKTKLLHFMEGGEAGARGEEINKLVAKMI 240
                 799**********************999999999989999******************************************************************************************************************************5689*****************************************************************97 PP

>> TIGR01309  L30P_arch: ribosomal protein L30P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   8.8e-27   1.2e-23       3     151 .]      81     240 .]      79     240 .] 0.85

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 8.8e-27
   TIGR01309   3 viriRGtvdvkrdiedtlelLrlrkvnhavlvpeteslkgmlqkvkdyvtyGeidedtLeellrkRgr..lk......Gdkkvtdeyvkektglesveelakalvegeikleeag.lkpviRLhPPrkGfe.sik.kaykegGelGyrgekineLlkkml 151
                 viriRG ++v+ + ++ ++l rlr+ ++a+ v+ +e++  ml+ +++yvtyG  +++t+++l+ kRg   ++      G+++v  + +   tg+e  ++l+++++    +++ a+ +   ++L  P++Gf    k  ++ egGe+G rge+in+L+ km+
  MMETSP1061-20121228|4379_1  81 VIRIRGIIGVSPKAKKVMQLFRLRQLHNATFVKLNEATIRMLRLIEPYVTYGYPSRATVQKLVYKRGFgkINkqripiGSNDVIAKGLGVSTGIECAADLINEIYTVGPNFKKANnFLWPFKLSNPKGGFSqKTKlLHFMEGGEAGARGEEINKLVAKMI 240
                 8*****************************************************************85323211222266666666666777777788888888887777999888999***********976663589********************7 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  15.5    0.0016       2.2     157     220 ..       8      66 ..       2      74 .. 0.41

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0016
   TIGR02794 157 AakkaEeeakakaaaeakkkaEaeeakkkaeaeakKakaeaeaKakae.eakaKaeaeAkaKAea 220
                 ++k+a +e+ a aaaea k+aE e    ka+a+a K +a  + K  +e ea +K + e + KA+ 
  MMETSP1061-20121228|4379_1   8 LKKQATQEKLAAAAAEAAKAAE-E----KAAADAVKFEANSK-KYDEEyEATQKLAVENRRKAKS 66 
                 3455555554444444444444.2....34444422222221.2222233333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 812.24
//
Query:       MMETSP1061-20121228|4382_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-09   33.9   0.0      8e-08   29.9   0.0    2.2  2  TIGR00500 met_pdase_I: methionine aminopeptidase, type I
    0.00086   16.7   0.0      0.002   15.6   0.0    1.4  1  TIGR00501 met_pdase_II: methionine aminopeptidase, type II


Domain annotation for each model (and alignments):
>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   3.9e-11     8e-08       4     153 ..     232     382 ..     230     389 .. 0.86
   2 ?    1.3   0.0     0.021        44     187     201 ..     446     460 ..     435     466 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 3.9e-11
   TIGR00500   4 kskeeieklrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgykgfpgsvCiSvNevviH....GipdkkvlkdgDivniDvgveldGyygDtaktllv.gkvseeaeklleatkealkkaieeikvgkrikeiskaiekta 153
                 k++ eie +r +  +   +  ++ r+ + G+   +l+++ ++ +  +g        + +        N  ++H    G p+++ l dgD+  +D+g+e++ y++D + ++ v gk s ++  + +a+  a   +i+ i++g    ++ +a e+ +
  MMETSP1061-20121228|4382_1 232 KTNAEIELMRYTNWVSSMAHVEVMRSCRVGMMEYQLESLFQHHTYTHGGC----RHMSYTCICACGPNPAILHyghaGRPNDRKLLDGDMALLDMGAEYHCYASDITCSFPVnGKFSDNQLLVYNAVLSAQIDVIAAIRPGVSWTDMHRAAERAI 382
                 7789999999999999999999***************9999999888754....3345655555568999999988899*******************************983467777778889999999**************9999887765 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.021
   TIGR00500 187 tnvrlkeGmviaiEP 201
                 t   l  Gmv+++EP
  MMETSP1061-20121228|4382_1 446 TARTLEAGMVLTVEP 460
                 5678999*******9 PP

>> TIGR00501  met_pdase_II: methionine aminopeptidase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   9.6e-07     0.002      69     141 ..     306     382 ..     290     462 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 9.6e-07
   TIGR00501  69 agdetvlkdedvvkldlGahvdGyiadtaitvdlddqyke..ll..kaakdaletaikeiradvevgeiGkvieevi 141
                 + ++++l d+d+  ld+Ga+   y  d     +++ ++++  ll  +a+  a   +i  ir++v+ +++ ++ e +i
  MMETSP1061-20121228|4382_1 306 RPNDRKLLDGDMALLDMGAEYHCYASDITCSFPVNGKFSDnqLLvyNAVLSAQIDVIAAIRPGVSWTDMHRAAERAI 382
                 335677889******************99888887764322243348999*********************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 2115.71
//
Query:       MMETSP1061-20121228|4394_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|4392_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 2214.01
//
Query:       MMETSP1061-20121228|4396_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1061-20121228|4390_1  [L=882]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-09   35.8   9.2        0.9    7.7   0.1   10.4 10  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.37   1.5e+03      17      28 ..     239     250 ..     238     251 .. 0.86
   2 !    7.7   0.1   0.00022       0.9       2      29 ..     278     308 ..     277     311 .. 0.80
   3 !    4.0   0.0    0.0032        13       1      21 [.     379     399 ..     379     402 .. 0.90
   4 !    2.6   0.0    0.0089        37       1      21 [.     438     458 ..     438     459 .. 0.90
   5 ?    1.7   0.1     0.017        71       3      21 ..     497     515 ..     495     529 .. 0.63
   6 !    2.8   0.0    0.0081        33       1      15 [.     551     565 ..     551     571 .. 0.85
   7 ?    2.3   0.0     0.012        48       1      15 [.     606     620 ..     606     627 .. 0.87
   8 !    6.3   0.0   0.00059       2.4       1      21 [.     647     667 ..     647     674 .. 0.89
   9 ?    0.3   0.0     0.049     2e+02       3      11 ..     701     709 ..     699     709 .. 0.88
  10 ?   -2.0   0.0      0.28   1.1e+03      19      29 ..     727     737 ..     726     737 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.37
   TIGR00756  17 eeAlelfdeMke 28 
                 ++A+e +++M+ 
  MMETSP1061-20121228|4390_1 239 RKAKEALRRMQN 250
                 79********85 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00022
   TIGR00756   2 tyntlisglckagrvee...AlelfdeMker 29 
                 +yn +i++l+k+g  +    A+e+++eM+++
  MMETSP1061-20121228|4390_1 278 AYNLWIHALAKSGYHDAghqAEEVLKEMQRN 308
                 69***********998533378888888887 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.0032
   TIGR00756   1 vtyntlisglckagrveeAle 21 
                 vt+ t++++ +++g +e A++
  MMETSP1061-20121228|4390_1 379 VTCDTMLNAWAREGTMESAER 399
                 79************9999987 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.0089
   TIGR00756   1 vtyntlisglckagrveeAle 21 
                 ++y+t++++ ++ ++ + A++
  MMETSP1061-20121228|4390_1 438 ISYSTVMNAWANVRSGDAAEK 458
                 59**********999999986 PP

  == domain 5    score: 1.7 bits;  conditional E-value: 0.017
   TIGR00756   3 yntlisglckagrveeAle 21 
                 +n++i + + +++++ +++
  MMETSP1061-20121228|4390_1 497 FNSVIQCWAASRDMRAGEK 515
                 7888888888888765543 PP

  == domain 6    score: 2.8 bits;  conditional E-value: 0.0081
   TIGR00756   1 vtyntlisglckagr 15 
                 +tynt++s+ ++ g+
  MMETSP1061-20121228|4390_1 551 ITYNTILSAWSHCGK 565
                 69*******999886 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.012
   TIGR00756   1 vtyntlisglckagr 15 
                 vt+nt++++ +k++ 
  MMETSP1061-20121228|4390_1 606 VTFNTVLDAWSKSRL 620
                 7********999875 PP

  == domain 8    score: 6.3 bits;  conditional E-value: 0.00059
   TIGR00756   1 vtyntlisglckagrveeAle 21 
                 +++++++++l+k++ +++A +
  MMETSP1061-20121228|4390_1 647 YSFTCVMDALAKSKVPNKASQ 667
                 69*************999965 PP

  == domain 9    score: 0.3 bits;  conditional E-value: 0.049
   TIGR00756   3 yntlisglc 11 
                 ynt++++++
  MMETSP1061-20121228|4390_1 701 YNTVLNACA 709
                 *******96 PP

  == domain 10    score: -2.0 bits;  conditional E-value: 0.28
   TIGR00756  19 AlelfdeMker 29 
                 A++++++M +r
  MMETSP1061-20121228|4390_1 727 AVDIYKSMSSR 737
                 899*****875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.45
# Mc/sec: 2586.99
//
Query:       MMETSP1061-20121228|4398_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|4395_1  [L=839]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-56  189.9   0.0    4.5e-39  132.2   0.0    3.2  3  TIGR00492 alr: alanine racemase


Domain annotation for each model (and alignments):
>> TIGR00492  alr: alanine racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.2   8.7e-19   3.6e-15       4      72 ..      40     110 ..      37     115 .. 0.87
   2 ?   -3.5   0.0       0.2   8.1e+02      75     120 ..     192     241 ..     188     243 .. 0.71
   3 !  132.2   0.0   1.1e-42   4.5e-39     114     367 ..     546     838 ..     536     839 .] 0.81

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 8.7e-19
   TIGR00492   4 tveidlaalkhNlsaikkkiaek.skimavvKanaYGhGlievaktllqk.gadalavatleeaieLrkag 72 
                 + +i l+al hN+s++ + + ++  +++ vvKa++YGhG+i +a +l +k gada+avatlee+i+Lrka 
  MMETSP1061-20121228|4395_1  40 VHKIRLSALSHNFSEVESAANRQrCSVIVVVKADGYGHGAIPTAIFLADKiGADAFAVATLEEGIALRKAL 110
                 56899************87765426799****************99988769****************975 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.2
   TIGR00492  75 apiLllegvs..keevkilaknelttvvfsveqlkaleeallkek..krl 120
                 + iL+l+     +++ + + +++++ +++  e + al e   ++   krl
  MMETSP1061-20121228|4395_1 192 IRILVLGPPVgfPRCFDDYYHYNIEVMISGPEVAMALYEWVSNTDerKRL 241
                 67888885433599999999999999999999998887765443322555 PP

  == domain 3    score: 132.2 bits;  conditional E-value: 1.1e-42
   TIGR00492 114 lkekkrlkvhlkvdtGmnRlGvkldeea........eevkklrklkkll.......klegivsHlatadekkktttkkqierfksfleslkkkk.elklvhiansaailalkesh................fdlvRpGiiLYGlspsaklkkkaelklkpvlslkskiiavktvkkgekvsYggefvaeedtkigvvaiGYaDGypralsngt.evlvngkrvkivGrvcmdllmVdLgke.......aqaktgdevilvgkd......keisidevakllktiaYElictlsk.rvprvy 367
                   +kkrl+ h  vd+Gm RlG+k+d+++         +v+ l++l +l+       +  g+++H+a+a+   +t    q+++fks+l+  +++   +++++  nsaa l+ +  h                   vR G  +YG +ps        ++l+ + +l +++ +v ++k+ge+v+Y   +va  + +i++++iG+aDGypr+l ng+ +v ++g+  +++G+vcmd+lmV+Lg+        aq+ +gd+ il+g d       ++ + +va++lkt +  l c l+k rv r y
  MMETSP1061-20121228|4395_1 546 TPTKKRLRWHALVDSGMGRLGFKPDQVLpeeqgkrrDTVEILKELVDLEvtpdcpiEFYGMCTHMAEANST-STFSDSQMKKFKSLLKRVRTAGiSVPTLSTDNSAALLTTNLVHftanakelltqtdadtRGYVRTGGAIYGQRPSF-------TQLQAISTLMASVRHVASLKEGESVGYDRAYVASMNVRIATLTIGFADGYPRELGNGVgSVSIRGHLFPVAGNVCMDMLMVELGPAgdtdgigAQVVVGDTAILWGPDdgeegeGHVRLRDVAATLKTTQSALTCGLNKeRVLRQY 838
                 56788*******************98762111111122333333333332222222467*********999.5999******************77*************9998887777788888766444457*************9.......79******************************************************9748***********************98722222224566888899999877876655789999********99999999753676665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       288  (0.0702097); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.51
# Mc/sec: 2171.35
//
Query:       MMETSP1061-20121228|4399_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 555.45
//
Query:       MMETSP1061-20121228|4400_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   13.4   0.0      0.011   12.6   0.0    1.3  1  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.6e-06     0.011      62     115 ..     111     173 ..      95     182 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.6e-06
   TIGR00225  62 d........eivivsplegsPAekag.ikpgDkIikvdgksvagmelddavelirGkkgtkvk 115
                 d        + v+++    + A k+g i pgD ++++dg +v + + + ++el+     t   
  MMETSP1061-20121228|4400_1 111 DggssgvrvQSVVKDAETAGSAWKTGrIAPGDVLLAIDGVDVSSSDFETVMELLTTTTTTTTT 173
                 455553332333444444567999999*************************99877777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1160.73
//
Query:       MMETSP1061-20121228|4406_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|4403_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1722.99
//
Query:       MMETSP1061-20121228|4402_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-22   78.3   0.0    8.7e-12   42.4   0.0    3.8  3  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    3.9e-06   23.9   0.0      0.027   11.3   0.0    3.1  3  TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB


Domain annotation for each model (and alignments):
>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   4.3e-15   8.7e-12     110     310 ..     147     357 ..      70     363 .. 0.75
   2 !   13.0   0.0   3.5e-06    0.0071     343     386 ..     448     489 ..     438     496 .. 0.81
   3 !   17.1   0.0     2e-07   0.00041     391     432 .]     519     562 ..     513     562 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 4.3e-15
   TIGR00479 110 awnYRnkarlslsrsksgkq.....lqaGfykkgshdivdvkqClvqepklnkllpkvkailenfgvskyneekekgklrsivlrigretgelavvlitalekl....phkeelvkelqedlpev.ksivqninpektnvifGe...eteviaGeeviyel..lgdvk.lelsardFfqvnseqteklvdralealelqgeekvvDaycGvGtftlp 310
                 +  +R +a+l     ksg+q      + G+yk+g+h ++++ +C v +p +n ++ ++ka  ++ g+++y +++    lr + l++ r+tg++a++l+  +++l    p   +l+kel +  p++ +s+    n ++ n if     + + ++G+e ++e   +g++  l +s+ +F q n +  +++ + +  a  + g  kv ++y+GvG ++l 
  MMETSP1061-20121228|4402_1 147 TTKWRTQAKLVA-APKSGSQwsndgCIFGLYKRGTHTVLEIPDCSVHHPSINRAVAALKAATAKTGTPAYTDDN---GLRYVQLQVERTTGKIALTLVWGTSELkwtqPALSRLTKELLRAEPDLwHSMWCHCNDSPGNNIFSRnprNWHRLSGHEFVREPlpVGELGwLYFSPLAFRQGNIDGFDVIANDVARA--VPGGSKVCELYAGVGMLGLT 357
                 455566666533.333333422222689******************************************9876...57888999999****999998666655333378899999*99999**9579999***********962225789*********72257775379*******************99876..6899***********99985 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 3.5e-06
   TIGR00479 343 veflageleevlpklskekisadkvllDPpRkGcaaevlreiik 386
                 ++++++ + e l   +     a+ +++DPpRkG ++evl+e++k
  MMETSP1061-20121228|4402_1 448 ATYMVASAAEALKAGQ--ALGAEILIVDPPRKGLEDEVLEELCK 489
                 5677777777765554..47899*******************98 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 2e-07
   TIGR00479 391 rivYvsCnPatLarDlevLlkeG..YkiekvqvvDmFPhtaHvE 432
                  ++YvsC    LarD+e Ll +G  +k+e      +FP  +HvE
  MMETSP1061-20121228|4402_1 519 TLIYVSCGFDALARDTEKLLSSGggWKLESATGYILFPGSNHVE 562
                 689*************998876657******************9 PP

>> TIGR02085  meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   1.3e-05     0.027      47     160 ..     142     258 ..     125     266 .. 0.78
   2 !    3.8   0.0    0.0025       5.1     296     321 ..     462     487 ..     445     499 .. 0.76
   3 !    5.0   0.0     0.001       2.1     327     372 ..     518     567 ..     498     569 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
   TIGR02085  47 pvssaeqafrnkakmvv...sGs...verpllGilkrdgdp.vdlvdcplypasfeevlavlkdfiaraGltpynvakkkGelkyillteseasgklmlrfvlrsetklarlrrelpklle 160
                  v s+ + +r +ak+v    sGs    +  ++G+ kr ++  +++ dc ++ +s++  +a+lk   a++G + y        l+y+ l   +++gk+ l +v  + + l+  + +l +l++
  MMETSP1061-20121228|4402_1 142 VVPSETTKWRTQAKLVAapkSGSqwsNDGCIFGLYKRGTHTvLEIPDCSVHHPSINRAVAALKAATAKTGTPAYTD---DNGLRYVQLQVERTTGKIALTLVWGT-SELKWTQPALSRLTK 258
                 466788899999**9974445652215778*****998766489****************************9974...456*****************999765.345555555655555 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0025
   TIGR02085 296 akadvpelvlvnpprrGiGkelsdyl 321
                  +a   e+++v+ppr+G+  e+ + l
  MMETSP1061-20121228|4402_1 462 GQALGAEILIVDPPRKGLEDEVLEEL 487
                 45566899**********98876655 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.001
   TIGR02085 327 kfilysscnaqtmakdiael....asykilrvqlfdmfphtshyevltll 372
                 + ++y sc   ++a+d ++l     ++k++    + +fp ++h e l ++
  MMETSP1061-20121228|4402_1 518 QTLIYVSCGFDALARDTEKLlssgGGWKLESATGYILFPGSNHVETLCIF 567
                 4689************99884333469******************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.55
# Mc/sec: 1367.89
//
Query:       MMETSP1061-20121228|4407_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 694.38
//
Query:       MMETSP1061-20121228|4408_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.28
# Mc/sec: 282.83
//
Query:       MMETSP1061-20121228|4411_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.50
# Mc/sec: 197.98
//
Query:       MMETSP1061-20121228|4410_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-26   89.3   0.2    2.8e-26   89.1   0.2    1.0  1  TIGR02381 cspD: cold shock domain protein CspD


Domain annotation for each model (and alignments):
>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.2   6.9e-30   2.8e-26       3      67 ..       6      69 .]       4      69 .] 0.94

  Alignments for each domain:
  == domain 1    score: 89.1 bits;  conditional E-value: 6.9e-30
   TIGR02381  3 iGivkWfnnakGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqfevvqgekGahatkivpi 67
                +G+vkWfn  kGfGfi ++  + D+fah+s+iq DG++tL  Gq+v+f v+qg+kG +a +i p+
  MMETSP1061-20121228|4410_1  6 TGTVKWFNEEKGFGFIEQQ-SGPDVFAHFSAIQGDGFKTLAEGQQVEFSVTQGQKGPQAENIRPV 69
                8***************876.568**************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1061-20121228|4405_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-45  151.9   2.2    4.6e-44  148.7   1.6    1.9  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    8.8e-42  141.1   1.8    1.1e-41  140.8   1.2    1.0  1  TIGR02415 23BDH: acetoin reductases
    1.2e-39  133.9   1.3    1.6e-39  133.6   0.9    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.1e-35  121.0   0.7    1.4e-35  120.7   0.5    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.9e-35  120.4   2.4    3.3e-35  119.6   1.7    1.4  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    8.4e-35  118.3   1.1    1.4e-34  117.5   0.7    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    4.4e-34  116.0   2.6    4.5e-33  112.7   1.8    1.9  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    5.8e-34  115.4   1.5    7.5e-34  115.0   1.0    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    3.7e-20   70.1   1.9      1e-18   65.4   1.3    2.0  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.2e-16   58.6   1.0    1.7e-16   58.1   0.7    1.1  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    1.3e-16   58.4   4.4    3.5e-14   50.4   3.0    2.8  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    4.6e-08   30.6   0.2    6.1e-08   30.2   0.1    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0022   15.0   0.3     0.0049   13.9   0.2    1.5  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
     0.0024   14.9   0.0     0.0048   13.9   0.0    1.5  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
     0.0043   14.0   1.3      0.016   12.1   0.9    1.8  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
     0.0096   12.6   0.0      0.011   12.4   0.0    1.2  1  TIGR01179 galE: UDP-glucose 4-epimerase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.7   1.6   1.8e-46   4.6e-44       2     238 ..      11     273 ..      10     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 148.7 bits;  conditional E-value: 1.8e-46
   TIGR01830   2 lvtGasrgiGkaiakklakegakvviterskeekaeelaeelke...agvkaaavkldvsdeeevkelveeveeelgeidilvnnAGit.rDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkr...sG....riinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaP.....Gfietdmtekl............sekvkkkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGGl 238
                 +vtGa+   G+a  + +a++gakvv ++++  +++ee+++ +++   +  +  av++dv+d+++v+ +v++++e++++id l nnAG   + k  l    +d+  v+++n++g+f v +av+k+m k++   +G    +i+n +sv+gl G +  + Ya+sKa + ++t s++k+la  +i+vnav+P     Gf+ t   e l            +++v k+ ++ +p+krlg+ eev + vafL  +++sy tG+ l vdGG+
  MMETSP1061-20121228|4405_1  11 IVTGAGGNFGRAGCLYFARHGAKVVAMDNN-PTTLEETTSYVQKelpSTIEIFAVTCDVTDATSVQVAVDAAVERFSRIDFLWNNAGYQgQIKPTLDYDPKDFALVMNINVTGMFIVLQAVAKQMAKQQeveEGsktySIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSKDLAPVGIRVNAVSPaligpGFMWTRQNE-LhaksgspyfatdPDTVAKNKVNGVPMKRLGTIEEVLQSVAFLLGEQSSYTTGTNLVVDGGM 273
                 8************************99764.44455555555442224589999*********************************972458899*******************************974443433337**********************************************98622222676554332.211111111222256788999999*************************************9 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.8   1.2   4.1e-44   1.1e-41       1     251 [.       8     273 ..       8     275 .. 0.88

  Alignments for each domain:
  == domain 1    score: 140.8 bits;  conditional E-value: 4.1e-44
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkek...gtkavavkldvsdkseveeaveqaveklGeldvlvnnaGv.alvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhk..G.k...iinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivkte.mreeideklaelag....keigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGl 251
                 kv +vtGa+   G+a    +a+ G +v+ +d n+ t+ et++ ++++     +  av+ dv+d  +v+ av+ ave++  +d l nnaG  ++++p l+ +++++  + n+nv+g++  +qa a+++ k+++   G k   i+n as+ag +g+p + ay+s+k av ++t + +k+La+ gi vna +P ++    m+ + +e  a+        + ++  ++  + + + r  + e+v + v+fl +e+s y tG  ++vdGG+
  MMETSP1061-20121228|4405_1   8 KVIIVTGAGGNFGRAGCLYFARHGAKVVAMDNNPTTLEETTSYVQKElpsTIEIFAVTCDVTDATSVQVAVDAAVERFSRIDFLWNNAGYqGQIKPTLDYDPKDFALVMNINVTGMFIVLQAVAKQMAKQQEVeeGsKtysIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSKDLAPVGIRVNAVSPALIGPGfMWTRQNELHAKSGSpyfaTDPDTVAKNKVNGVPMKRLGTIEEVLQSVAFLLGEQSSYTTGTNLVVDGGM 273
                 799******************************99999998888775222677889*********************************8359*********************************998875323422444**************************************************99865388888887777776322233345566777788889*********************************9 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.9   6.1e-42   1.6e-39       2     252 ..       8     273 ..       7     275 .. 0.85

  Alignments for each domain:
  == domain 1    score: 133.6 bits;  conditional E-value: 6.1e-42
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleea...ggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiq.hvapieefptekfekiiavnltsafhtiraalpimkkqg...wG....riiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicP.....gyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgGw 252
                 kv++vtGa++  g+a    +a++Gakvv  d +  ++e++++ ++++   ++e+ a++ dvt++++++  ++a++++f+++d L nnAG q +++p  ++++++f+ ++++n+t+ f++ +a+ ++m kq+    G     i+n asv gl++ +   aY ++K +++ +t ++ ++ A  gi++na+ P     g+++t   e   +  +     + ++v k+  ++ +p kr+ t+eev + ++fl ++++   tG++l++dgG 
  MMETSP1061-20121228|4405_1   8 KVIIVTGAGGNFGRAGCLYFARHGAKVVAMDNNPTTLEETTSYVQKElpsTIEIFAVTCDVTDATSVQVAVDAAVERFSRIDFLWNNAGYQgQIKPTLDYDPKDFALVMNINVTGMFIVLQAVAKQMAKQQeveEGsktySIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSKDLAPVGIRVNAVSPaligpGFMWTRQNELHAKSGSPYFATDPDTVAKN-KVNGVPMKRLGTIEEVLQSVAFLLGEQSSYTTGTNLVVDGGM 273
                 99*******************************9888888887776522267888899*********************************779*********************************98862333544457**********************************************9871111145555443333333333444555666655.5699************************************96 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.7   0.5   5.3e-38   1.4e-35     412     672 ..       5     275 ..       2     278 .. 0.87

  Alignments for each domain:
  == domain 1    score: 120.7 bits;  conditional E-value: 5.3e-38
   TIGR02632 412 larrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadk.avalkldvtdeeavkaafaevalayGGvdivvnnaGia.vskpleeteleeWdlnldilatGyflvareaarllrkqg.l..gg...nlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewr..ekraaay.gieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaGvaa 672
                 + ++v++vtG+++  Gr+ ++ ++ +Ga vv  d +  ++e++   ++++  + +   a++ dvtd ++v+ a+++++  +  +d + nnaG     kp+ +   ++++l ++i++tG f+v +  a+++ kq+ +  g+   ++v +as+ ++  ++  +ay+++kaa   +    + +la++girvn+v P+ +  G  +++++    +k+ + y   + d +++   +   +kr  + e++ ++v +l++++++ ttG+ + vd+G++ 
  MMETSP1061-20121228|4405_1   5 FGNKVIIVTGAGGNFGRAGCLYFARHGAKVVAMDNNPTTLEETTSYVQKELPSTIeIFAVTCDVTDATSVQVAVDAAVERFSRIDFLWNNAGYQgQIKPTLDYDPKDFALVMNINVTGMFIVLQAVAKQMAKQQeVeeGSktySIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSKDLAPVGIRVNAVSPALIGPG-FMWTRQNElhAKSGSPYfATDPDTVAKNKVNGVPMKRLGTIEEVLQSVAFLLGEQSSYTTGTNLVVDGGMSS 275
                 789*********************************************99987762679*********************************973569999999********************99999987752322223337*************************************************876555.57876544103333333134478999999999999**99******************************875 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.6   1.7   1.3e-37   3.3e-35       4     264 ..       8     273 ..       5     274 .. 0.84

  Alignments for each domain:
  == domain 1    score: 119.6 bits;  conditional E-value: 1.3e-37
   TIGR03971   4 kvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvls.ygrafelseeqWdtvldvnlkGvWktvkavvPalierk...nGG...siiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtami...epeamrelfa......kre.eaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                 kv ++tGa    Gra  + +a++Ga ++a+d     +   + ++  +++l  t++        + a ++dv +   ++ +v+ +ve+f r+d + +naG  + + ++ + +++++  v+++n++G++ +++av  ++  ++   +G    si+ ++svagl+++p  + ya++k  ++++t + +++la+ girvn+++P  +    +   ++e+ ++  +      + + ++a++ ++ +p++ l + e+v + va+l +++s y tG++l vd G+
  MMETSP1061-20121228|4405_1   8 KVIIVTGAGGNFGRAGCLYFARHGAKVVAMDNN--PTTLEETTSYVQKELPSTIE--------IFAVTCDVTDATSVQVAVDAAVERFSRIDFLWNNAGYQGqIKPTLDYDPKDFALVMNINVTGMFIVLQAVAKQMAKQQeveEGSktySIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSKDLAPVGIRVNAVSPALIGPGFMwtrQNELHAK--SgspyfaTDPdTVAKNKVNGVPMKRLGTIEEVLQSVAFLLGEQSSYTTGTNLVVDGGM 273
                 89*****************************54..33344444556788988876........567899******************************98637899****************************9976542213323348**************************************************99876542222333333..12344446651556667**************************************996 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   0.7   5.6e-37   1.4e-34       5     245 ..       7     273 ..       4     275 .. 0.84

  Alignments for each domain:
  == domain 1    score: 117.5 bits;  conditional E-value: 5.6e-37
   TIGR01832   5 GkvalvtGantGlGqgiavglaeaGadivgvg..iselsetqekveal...GrkflslkadladeeaakalvdeaveeagkidilvnnaGiirr.edavefsekdwddvlnvnlkavfllsqavakkllkqG......rkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvna.....iaPGyletnnte.a.......lradek.rnaaileriPagrwGepedlagaavflassasdyvnGailavdGGw 245
                  kv++vtGa   +G++ ++ +a+ Ga++v+++   + l+et++ v+++     ++ +++ d++d ++++  vd ave++ +id l nnaG   + + ++++  kd+  v+n+n+  +f++ qavak++ kq       ++  i+n as+  ++G   + +y++sk av+ +t + ++++a  gi+vna     i PG++ t   e +       + +d +  +++ ++ +P  r G+ e++ +++ fl  + s+y +G+ l vdGG 
  MMETSP1061-20121228|4405_1   7 NKVIIVTGAGGNFGRAGCLYFARHGAKVVAMDnnPTTLEETTSYVQKElpsTIEIFAVTCDVTDATSVQVAVDAAVERFSRIDFLWNNAGYQGQiKPTLDYDPKDFALVMNINVTGMFIVLQAVAKQMAKQQeveegsKTYSIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSKDLAPVGIRVNAvspalIGPGFMWTRQNElHaksgspyFATDPDtVAKNKVNGVPMKRLGTIEEVLQSVAFLLGEQSSYTTGTNLVVDGGM 273
                 589***************************973356889******986222345667899******************************975526799****************************988754433344557**********************************************33333457999996543121112222344554146678999************************************95 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.7   1.8   1.8e-35   4.5e-33       1     240 [.       8     273 ..       8     275 .. 0.83

  Alignments for each domain:
  == domain 1    score: 112.7 bits;  conditional E-value: 1.8e-35
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvap..neerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrd.avfkkmtkeqWeevidtnlnsvfnvtrpviegmler.......gfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaP.....Gyiatemvk...........avredvlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGl 240
                 +v +vtG+ g  G+a c  +a++G kvva  ++    e+++++ q++  +  ++  v+ dv++  + + av+   +   ++d l nnaG     +     + +++  v+++n++++f v + v ++m+++       +   i+n +sv Gl+G    + y+++ka ++ +t + +++ a  g+ vn+++P     G++ t   +           + ++ v k+ v+++P+krlg+ ee+ + vafl +e+++y tG++l v+GG+
  MMETSP1061-20121228|4405_1   8 KVIIVTGAGGNFGRAGCLYFARHGAKVVAMDNNptTLEETTSYVQKELPSTIEIFAVTCDVTDATSVQVAVDAAVERFSRIDFLWNNAGYQGQiKPTLDYDPKDFALVMNINVTGMFIVLQAVAKQMAKQqeveegsKTYSIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSKDLAPVGIRVNAVSPaligpGFMWTRQNElhaksgspyfaTDPDTVAKNKVNGVPMKRLGTIEEVLQSVAFLLGEQSSYTTGTNLVVDGGM 273
                 7899************************965543467788889999999999*************************************976514455678899***********************98732222212347**********************************************9862222266655432211111111111346789999****************************************96 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.0   1.0   2.9e-36   7.5e-34       3     248 ..       7     273 ..       5     275 .. 0.85

  Alignments for each domain:
  == domain 1    score: 115.0 bits;  conditional E-value: 2.9e-36
   TIGR03206   3 dkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairek...ggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwd.vlkpflktekaewerliainltgalymhhavlkgmverka...g....rivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcp...gp....t.dtalledvkse...aekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsggl 248
                 +kv+ivtg gg  g a c+ fa+ gakv  +d n  + e+ ++ ++++     +  av++d+td +sv++av aa e +  +d l nnag++ ++kp l+ ++ ++  ++ in+tg + +  av+k m ++++   g     ivn as a+  g+     ya  k  ++a++ + +++la  gi vn v p   gp    t +  l +        a++p+ + +   + +p+ rlg  +++  +++fl  +++++ tg  l v gg+
  MMETSP1061-20121228|4405_1   7 NKVIIVTGAGGNFGRAGCLYFARHGAKVVAMDNNPTTLEETTSYVQKElpsTIEIFAVTCDVTDATSVQVAVDAAVERFSRIDFLWNNAGYQgQIKPTLDYDPKDFALVMNINVTGMFIVLQAVAKQMAKQQEveeGsktySIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSKDLAPVGIRVNAVSPaliGPgfmwTrQNELHAKSG-SpyfATDPDTVAKNKVNGVPMKRLGTIEEVLQSVAFLLGEQSSYTTGTNLVVDGGM 273
                 89********************************9999988888876521134567999*******************************9758**********************************76543111322237**********************************************99855545333221223333322.23447899***********************************************8 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.4   1.3     4e-21     1e-18       1     238 [.      10     273 ..      10     274 .. 0.81

  Alignments for each domain:
  == domain 1    score: 65.4 bits;  conditional E-value: 4e-21
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaq...ggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpalsee..dwdavietnldgfynvihplvmpmirar...kggr...iitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdl.................kealklvpmkrvgkaeevaalaaflmsddaayvtrqvisvnggm 238
                 ++vtga    gra  l +a  g ++ v + ++ ++ ee+ + ++ +     +   +  dv+d  +v+ +++a +++      +  nag +  +  p+l  +  d+  v++ n+ g++ v++ +   m + +   +g +   i+  asv+g+ g    v y+++ka ++  t + + +la   i vn ++p li  +++ + +++l                 k++++ vpmkr+g  eev   +afl+ ++++y t   + v+ggm
  MMETSP1061-20121228|4405_1  10 IIVTGAGGNFGRAGCLYFARHGAKV-VAMDNNPTTLEETTSYVQKElpsTIEIFAVTCDVTDATSVQVAVDAAVERFSRIDFLWNNAGYQG-QIKPTLDYDpkDFALVMNINVTGMFIVLQAVAKQMAKQQeveEGSKtysIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSKDLAPVGIRVNAVSPALIGPGFMWTRQNELhaksgspyfatdpdtvaKNKVNGVPMKRLGTIEEVLQSVAFLLGEQSSYTTGTNLVVDGGM 273
                 58********************998.56788889999999988865211344456889**********************99******875.5678887542288899***************9999876422245443349999************************************************98776554444311111111111111112567889*************************************9 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.7   6.5e-19   1.7e-16       5     256 ..       7     274 ..       3     278 .. 0.78

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 6.5e-19
   TIGR03325   5 devvlvtggasglgralvdrfvaegarvavldksaagleeleaahgd......kvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalva....srg....sviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrglksldladksissvplgd...ll.ksv..lpigrmadaeeytgayvffatrgdtvpltgavlnydgglg 256
                 ++v++vtg +  +gra    f   ga+v  +d+    lee  +   +      ++ +v+ dv    + + av+  ve f ++d l +nag      + +d       + f  v++inv g ++  +a+  ++ +      g    s++ t s ag+  +   + y+++k av+ +    + +lap  +rvn v+p  ++  +   +  +l  ks s    +d   +  ++v  +p+ r+ + ee   +  f+  + ++  +tg+ l  dgg+ 
  MMETSP1061-20121228|4405_1   7 NKVIIVTGAGGNFGRAGCLYFARHGAKVVAMDNNPTTLEETTSYVQKelpstiEIFAVTCDVTDATSVQVAVDAAVERFSRIDFLWNNAGYQGQIKPTLDYD----PKDFALVMNINVTGMFIVLQAVAKQMAKqqevEEGsktySIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSKDLAPVgIRVNAVSPALIGPGFMWTRQNELHAKSGSPYFATDpdtVAkNKVngVPMKRLGTIEEVLQSVAFLLGE-QSSYTTGTNLVVDGGMS 274
                 79************************************997665433111122689**********************************887777777653....356999********9887777766655411222342223677788889999999999**********************66*********99999988888888888877543322111221333337999999999998887776654.56678999999999995 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   3.0   1.4e-16   3.5e-14       3     263 ..       9     274 ..       7     277 .. 0.71

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 1.4e-16
   TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrs...aeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnasaf.yptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqk.gtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampeevke.......ey.........rrk...vplgqreasaeqiadvviflvskkakyitGtiikvdGGls 263
                 + +vtGa   +Gr+    + ++G +vv   ++    +e +s + +el ++    av++  d++ ++s     +  +da+   f r d l nna       p l  d ++            a ++  n    +++++a a++++ +++ e  s+++sivn +     +  ++   y+ +k a+  +t s++ +la+ +irvn+v+p l   p  m + ++e        y         + k   vp+ +r  + e++ + v+fl+ +++ y tGt + vdGG+s
  MMETSP1061-20121228|4405_1   9 VIIVTGAGGNFGRAGCLYFARHGAKVVAMDNNPttlEETTSYVQKELPSTIEIFAVTC--DVTDATS----VQVAVDAAVERFSRIDFLWNNAGYQgQIKPTLDYDPKD-----------FALVMNINVTGMFIVLQAVAKQMAkQQEVEEGSKTYSIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSKDLAPVGIRVNAVSPALI-GPGFMWTRQNElhaksgsPYfatdpdtvaKNKvngVPM-KRLGTIEEVLQSVAFLLGEQSSYTTGTNLVVDGGMS 274
                 6799999999999999999999999988766541113444555566666666666665..5666554....4556999999***********97431334666666665...........4555666777778888899887651456788899*********999999************************************9873.34333322222100011111111111111333112565.5667899***************************97 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   2.4e-10   6.1e-08       2     170 ..       9     173 ..       8     182 .. 0.77

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 2.4e-10
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevs.alsvdlvsldleaakdvedllkaleesikkeeyeri.llinnaGtlgdvskrek.elsDsknvqkyydsnvtslvvltsellkklkelq..glektvvnlssLcaikpfkswalYCaskaa 170
                 +++vtGa   fGr+    +a+    +g ++v +  n ++L e+   ++ e +    +  v+ d+  a+ v+  + a       e ++ri  l nnaG  g++  + + +  D+  v + + + ++ ++   ++ + k +e++  +    +vn +s++ ++  +++  Y +skaa
  MMETSP1061-20121228|4405_1   9 VIIVTGAGGNFGRAGCLYFAR----HGAKVVAMDNNPTTLEETTSYVQKELPsTIEIFAVTCDVTDATSVQVAVDA-----AVERFSRIdFLWNNAGYQGQIKPTLDyDPKDFALVMNINVTGMFIVLQAVAKQMAKQQEVEegSKTYSIVNTASVAGLRGTPAMVAYASSKAA 173
                 689**********99999998....99********************97765157889999999988877766554.....5567899844679*******998877244555555555555555555555555555566644355678***********************98 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   1.9e-05    0.0049       3     161 ..       6     174 ..       4     186 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.9e-05
   TIGR02622   3 kgkkvlvtGhtGfkGsWlslwLkelGaevaGysldpetkpnlfellk..lakklkdssvlgdirdaeklekaieev.....kPeivfhlaa.qplvrksY....kdPletfetnvlGtvnlleavralesvkavvlvtsDkvYe..nkewvwgyretdalGGhDpYsaskaaa 161
                  +k ++vtG  G  G    l+ ++ Ga+v+ +  +p+t +++   ++  l ++++  +v+ d++da++++ a++ +     + ++++  a  q  ++       kd +  +++nv G++ +l+av +   ++  v     k Y   n+ +v g r t a+     Y++skaa+
  MMETSP1061-20121228|4405_1   6 GNKVIIVTGAGGNFGRAGCLYFARHGAKVVAMDNNPTTLEETTSYVQkeLPSTIEIFAVTCDVTDATSVQVAVDAAverfsRIDFLWNNAGyQGQIKPTLdydpKDFALVMNINVTGMFIVLQAVAKQMAKQQEVEE-GSKTYSivNTASVAGLRGTPAMV---AYASSKAAV 174
                 68999*******************************9988777666511556777788999*****99988776541111245777776644555554431011344456789999999999998887766666654.44666544777777788777774...577777775 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.9e-05    0.0048     145     193 ..       7      61 ..       2      84 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.9e-05
   TIGR03911 145 ekdvlviGl.GkvGtaaavalvkkGakvyvydkekelleklvkdl.....pevgi 193
                 +k ++v G+ G+ G+a++ ++  +Gakv ++d++ + le +++ +     + ++i
  MMETSP1061-20121228|4405_1   7 NKVIIVTGAgGNFGRAGCLYFARHGAKVVAMDNNPTTLEETTSYVqkelpSTIEI 61 
                 5677888983589**********************99999876553333333444 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.9   6.4e-05     0.016       1     161 [.      10     183 ..      10     197 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 6.4e-05
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievv..lGdirdaesvkkavkg.......vdvvfhlaalia.....iPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGtaqyvPidekhplqaqsPysaskigadqlalsfyr 161
                 ++vtGa+G  G      + ++Ga+v a+ + n ++       v+ke+ ++ie++  + d+ da+sv+ av         +d ++  a   +     + y  +  +  ++ nv+G + vlqa  ++  ++      s +y   ++  +     + a   y++sk +  ++++s  +
  MMETSP1061-20121228|4405_1  10 IIVTGAGGNFGRAGCLYFARHGAKVVAMDN-NPTTLEETTSYVQKELPSTIEIFavTCDVTDATSVQVAVDAaverfsrIDFLWNNAGYQGqikptLDYDPKDFALVMNINVTGMFIVLQAVAKQMAKQQEVEEGSKTYSIVNTASVAGLRGTPAMVAYASSKAAVLAMTVSTSK 183
                 79*************************965.777777778889999999999863279******9998775411111114555555554322111123333344456799***********999999988889999****99999999999999999******998888777554 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   4.3e-05     0.011       2      66 ..      10      78 ..       9     183 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.3e-05
   TIGR01179  2 iLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekit....evklvegdladkekleavl 66
                i+vtG+ G  G   +  + ++g++vv +Dn  ++ +e+ ++++k      e+  v+ d++d+++++ ++
  MMETSP1061-20121228|4405_1 10 IIVTGAGGNFGRAGCLYFARHGAKVVAMDNNPTTLEETTSYVQKELpstiEIFAVTCDVTDATSVQVAV 78
                89*****************************99999999988876556567778899999999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.43
# Mc/sec: 856.39
//
Query:       MMETSP1061-20121228|4409_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 2247.38
//
Query:       MMETSP1061-20121228|4412_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 2012.83
//
Query:       MMETSP1061-20121228|4413_1  [L=650]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-134  446.7   0.0     2e-120  400.7   0.0    2.2  2  TIGR00471 pheT_arch: phenylalanine--tRNA ligase, beta subunit
    7.5e-35  118.2   0.0    4.9e-26   89.0   0.0    4.0  4  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit
    0.00014   18.3   0.0     0.0002   17.8   0.0    1.2  1  TIGR00470 sepS: O-phosphoseryl-tRNA(Cys) synthetase


Domain annotation for each model (and alignments):
>> TIGR00471  pheT_arch: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.7   0.0  1.5e-123    2e-120       1     491 [.       1     545 [.       1     555 [. 0.86
   2 !   43.8   0.0     2e-15   2.7e-12     499     551 .]     592     650 .]     583     650 .] 0.88

  Alignments for each domain:
  == domain 1    score: 400.7 bits;  conditional E-value: 1.5e-123
   TIGR00471   1 mPtvevkkddledll....igldreelleelpml....eaeieevdees..............kki..kleinpnRpDllsveGvarslrgylgiekglksylskks..evkllvdes.vlqiRPfivaavvkgiklndkvleslielqekLhanlgrdRrkvAiGihdldkvkfPlsYkavspndikFvPldsde..EltlaeilE.....ehkkgi.kYahiikdsdkfPlilDskddvvslPPiinsektkvtvetrdllidvtgtDkeavelvlniiatalaergferievveveredeele........lpeLaprflevsveeinrllGldlsadeiaesLkkmrldaeskde...klkvviPayRvDilhevDviEdvaigyglnklepelpkiaaigelkplekvsdlireimvglgfqEvisltltseeelfkklriednnd..vkvanPlteeyeivRksllpklletlkenkkkelPq..kiFEvGdvvlkdees.....eersrvvtklavlitsseanfneiksivaallrel 491
                 mPtv+v+kd ++  l     +++++el++e++++     +e ee++++s              + i  k+++ +nR+Dll++eG+ r+lr +lg ++ +++  + +      l+v +s +  iRPf+vaa++k+i+++++ ++s+i+lq++Lh nl+r+R +vAiG+hdld+v++P+ Y a +p di FvPl       + +++++         k +  Y+ iikds+ +P+i+D +d+v+slPPiin++++k+t +t++++i+ t+tD +++++vl  + t+++e++  +++vv+v+ e ++          +p+L+ r  + +++  n+l+G++lsa ei  + +k++l   s  e    l+v++P++R+Dilh+vD++Ed+ai+yg+n++ + +p + ++g ++pl++v dl+re    +g++Ev++  l+s +++f  l+    +d  v ++nP+ +eye+ R++llp+ll+t+++nk  ++ +  k+FE+ d v+ d e        + r v kla++ ++ +  f  i+ +v+ +++ +
  MMETSP1061-20121228|4413_1   1 MPTVSVDKDLFFSHLgrsyTDKEFDELCFEFGVEldeiTSEREEAEKSSanklsakelaaysdR-IiyKIDVPANRYDLLCIEGLCRGLRIFLGDQEAPEYTIVDPEtpAATLTVKKSnTDTIRPFVVAAILKDINFTQERYDSFIDLQDQLHRNLCRQRTLVAIGTHDLDSVEGPFVYDARPPTDIDFVPLTPSDkgSFKGDDLMTyyeteVSAKHLkPYVPIIKDSPLYPVIVDAQDRVLSLPPIINGDHSKITLDTKNVFIECTATDLTKANIVLDTVLTMFSEYCATPFSVVPVQVEYHDDSgsvvdsyvTPKLSLRREQAKIDFCNSLIGVNLSAAEIQTLCNKVQLGPASLLEndtLLEVTVPPTRSDILHAVDIAEDIAIAYGYNNIVKRVPMTHTVGGAEPLNQVGDLLREEIGRAGYTEVLTHGLCSVHDNFTALQCPVREDwaVSLSNPANIEYEVCRTTLLPGLLKTFQHNKSASFANgfKLFEISDAVILDGENvitdtVVGARNVRKLAAAYAGPTSGFEIIHGLVDRVMTLV 545
                 9*********9988778445555********998665556667787777777777555555531.235999************************99999888876656789***99835679*********************************************************************7543125777777655545433444438***************************************************************************9998776655411111111455555558999**************************755432223599********************************************************************************976544446******************************99987444********99997765655467889************************999765 PP

  == domain 2    score: 43.8 bits;  conditional E-value: 2e-15
   TIGR00471 499 esetksfieGRgAkivvegk......aiGvfGevhPevltnFelefpvsalEveievll 551
                  +e k++++GR+A+i+           +G+fG +hP vl+nF++ +p+s++E+++e l+
  MMETSP1061-20121228|4413_1 592 AHESKMYFPGRAAQILLTKPnskdkiRVGTFGILHPIVLKNFDILYPCSVVEIDLEELM 650
                 56899**********985434558899****************************9887 PP

>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0019       2.5     156     231 ..      61     137 ..      46     155 .. 0.72
   2 !    8.5   0.0   7.8e-05      0.11     306     342 ..     232     269 ..     225     275 .. 0.88
   3 !   89.0   0.0   3.6e-29   4.9e-26     410     643 ..     324     559 ..     300     574 .. 0.83
   4 !   11.4   0.0   1.1e-05     0.015     642     692 ..     594     650 .]     587     650 .] 0.86

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0019
   TIGR00472 156 lddd.vievsitpNRgDclSilgiArelAalldlnlelpveeeketetedegfkveiedeeacprylgrvikgvkvk 231
                 + d+ + +++++ NR D+l i g+ r l  +l+ +   +++   ++  + +  + + + ++  p++ +  +k+++++
  MMETSP1061-20121228|4413_1  61 YSDRiIYKIDVPANRYDLLCIEGLCRGLRIFLGDQEAPEYTIVDPETPAATLTVKKSNTDTIRPFVVAAILKDINFT 137
                 4455599*******************999988863333333333345555555556666666778888888887776 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 7.8e-05
   TIGR00472 306 viaddk.kilalaGvmggkesgvtekttnivlesayfn 342
                 vi+d +  +l+l  +++g++s++t +t+n+++e+   +
  MMETSP1061-20121228|4413_1 232 VIVDAQdRVLSLPPIINGDHSKITLDTKNVFIECTATD 269
                 67777779**************************8765 PP

  == domain 3    score: 89.0 bits;  conditional E-value: 3.6e-29
   TIGR00472 410 lrlkklnkilGtelskeevekiLkrLgf..kvekkkee.levlvPsyRtDiereeDliEEiaRiyGydnieaeplsvsskeeknneeqelkkklrkllvglGfnEvityslvske.kleklnlpklee..veiknplseelsvlRtsllpslLevlayNqnrknke.vklFEiGkvfekdseavkekerlailisgekeeeswnk.kkeekvdfydlkgiveslLeklklssealflkkaen 643
                  ++   n+++G++ls+ e++++ ++ ++      ++++ lev+vP  R Di +  D++E+ia  yGy+ni +  +++ +    +  +q   + lr+ +  +G++Ev+t  l s   ++  l+ p +e+  v ++np + e++v Rt+llp+lL++ ++N + ++ +  klFEi++    d+     +++++  + g ++ +++        + f  + g+v+++++++++  ea++++++ +
  MMETSP1061-20121228|4413_1 324 AKIDFCNSLIGVNLSAAEIQTLCNKVQLgpASLLENDTlLEVTVPPTRSDILHAVDIAEDIAIAYGYNNIVKRVPMTHTVGGAEPLNQ-VGDLLREEIGRAGYTEVLTHGLCSVHdNFTALQCPVREDwaVSLSNPANIEYEVCRTTLLPGLLKTFQHNKSASFANgFKLFEISDAVILDG-----ENVITDTVVGARNVRKLAAaYAGPTSGFEIIHGLVDRVMTLVEVAPEASYVATSGK 559
                 4567789****************9866511444455558************************************************8.889*******************9965156778888888899*******************************9986538**********999.....66777777777777777775555566677789999999999998866666666555 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 1.1e-05
   TIGR00472 642 eneelhpgqsaeiylk......kkkiGfigevhpelakkydlkeevfvaeldldkll 692
                 e++ + pg+ a+i l       k  +G++g +hp ++k++d+ +++ v+e+dl++l+
  MMETSP1061-20121228|4413_1 594 ESKMYFPGRAAQILLTkpnskdKIRVGTFGILHPIVLKNFDILYPCSVVEIDLEELM 650
                 5566888888888887777777889****************************9985 PP

>> TIGR00470  sepS: O-phosphoseryl-tRNA(Cys) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.5e-07    0.0002     267     324 ..     589     646 ..     581     650 .] 0.88

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.5e-07
   TIGR00470 267 rkdekkskyyipetqtevyayhpklkewievatfGvyspialakydidvevmnlGlGv 324
                   d   sk y p+  +++   +p  k+ i v tfG+  pi l ++di ++   + + +
  MMETSP1061-20121228|4413_1 589 DGDAHESKMYFPGRAAQILLTKPNSKDKIRVGTFGILHPIVLKNFDILYPCSVVEIDL 646
                 568899*****************************************99976666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (650 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.90
# Mc/sec: 953.25
//
Query:       MMETSP1061-20121228|4415_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 538.52
//
Query:       MMETSP1061-20121228|4414_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 2496.48
//
Query:       MMETSP1061-20121228|4416_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1724.96
//
Query:       MMETSP1061-20121228|4418_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0004   18.7   0.0    0.00066   18.0   0.0    1.4  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.6e-07   0.00066       5     127 ..     150     280 ..     146     293 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.6e-07
   TIGR01444   5 iGAniGd..vslvfaravaegrviafEPlpdllekleenvklnnlknvkllnaAvgdreg...........eleftvsddatgnsslaadselaeeseieVevvtlddlveeag.lekvdllKiDvEGaEleVLrgl 127
                  GA++G   +  ++ + + ++++ ++E +p+++e+l  n    ++     +n A + +e+            ++ft+ ++ +g+ ++a+ ++ +e++ ++V++ +l +++        v++  +DvEGaE  VL+++
  MMETSP1061-20121228|4418_1 150 MGAFNGVreSNSRLFETCLGWNTLLVEGNPRMFESLVPNRPHAHR-----FNFAPSCSEEdernnktvpfdYVVFTNGGLHDGSVKTAYLES-NETKVVDVPCGSLTKVLLDVFpGGHVSFFSLDVEGAEPYVLENI 280
                 566666422344555667778999**************9444444.....566655555555777855554444555444444444444444.4444589******998776544789****************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1736.16
//
Query:       MMETSP1061-20121228|4417_1  [L=1270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-71  238.5   0.0    6.4e-70  233.9   0.0    2.1  1  TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    5.9e-43  145.0   0.7    2.1e-41  139.9   0.5    2.3  1  TIGR02398 gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
    9.5e-24   82.4   0.0    2.3e-23   81.2   0.0    1.7  1  TIGR00685 T6PP: trehalose-phosphatase
    0.00061   17.7   0.0      0.001   17.0   0.0    1.4  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB


Domain annotation for each model (and alignments):
>> TIGR02400  trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.9   0.0   6.2e-73   6.4e-70      38     455 ..     401     869 ..     392     870 .. 0.85

  Alignments for each domain:
  == domain 1    score: 233.9 bits;  conditional E-value: 6.2e-73
   TIGR02400  38 gvWvgwsGke..veeee..ekklkkelegkitlvpvdLseeevdeyYegfsNsvLWPlfHyr..ldlaeyerk.................................efeaYkrvNrlfaekvaellkeg.......dvvwvhDYhllllpamlrelgven..vkiGfFlHiPfpsseilrllPvreellegllaadlvGfqteedaenflsavsrllgletlen.....kveskertvrveafpigidvdkfaeaakkpevkkeiaelreklkgekvilgvdRLDysKGlperlkafeklLeenpewrgkvvlvq.iavp.sRedveeYqelreeveelvgringefgeldwvpirylnksvdreeLvalyraadvalvtplrDGmNLVakEyvaaqedkk.GvLiLSefaGAaeeLkeallvnpkdiegvaeaiaealtmpleereerlrallkklekedvqrWaedflkeLk 455
                 + W+g    +  +e+++  +k+++ ++  k++++p++L+ ++ +e+Y gf+ +vLWP+fH++  ldl   + +                                 +++a+++vN +fa+ v e++ ++       + +w+hDYhl llp++l e+      ++  fFlHiPfp+s+i+r l + ee+l+g+l+ad+vGf+  + a++fl+a +r++gl+ ++      +v++ +rt+ v+   ++i+++ + +a+k p+v++e++ lr++   ++++ gv+      G   +l a+e+lL+++p+w+ kvv+v  i  p sR++ e+     +e+ ++v+ri+ +fg+      +    +++ ++ +al++a+dv ++tp+r+G+N    Ey++++++++ Gv+i Sef+   + L++al vnp di+ ++  +++al+m  eere r  + l+ ++++ + rW ++ l++++
  MMETSP1061-20121228|4417_1 401 AHWIGTVTPHppIEDSSedDKQAIRQVLAKMECTPIFLDPTTRQEHYYGFCKQVLWPAFHNIdlLDL---SISgadgnnnngkdnntniidnvtaasdwdqsrlddWWRAFQKVNMAFATVVEEIVGQDtghmidkTYLWIHDYHLALLPKYLCEKDRVTkyCRKVFFLHIPFPTSQIFRELECGEEILQGMLHADVVGFHAFDHARHFLNANKRIMGLNYENLvggliGVNYMGRTILVSMSNVSIEPNMVDAAMKLPVVETECNLLRRTHGDRSIVCGVEVGQRLSGTSLKLLAYERLLQDYPTWQPKVVMVLrILLPgSRKRDEQ--ITIRELRQIVQRIQEKFGTAVIDYKEIAGSTLPMSQRLALWNASDVLMLTPIREGLNHWPLEYIYSKRNTSpGVVIASEFSAVCSILNGALRVNPFDIQMTVTIMDKALSMDPEEREGRRYRDLDFVSNSPSDRWVRNVLRDMN 869
                 56776544321122222225667777889999****************************9754222...2222245666888999*************************************9987652222222689*************98765433358999**************************************************9977765311122345555************************************************9**************************998743655526665443..345789************9877777777899999999*********************************9*******************************************************************999986 PP

>> TIGR02398  gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.9   0.5   2.1e-44   2.1e-41     109     482 ..     502     870 ..     490     875 .. 0.86

  Alignments for each domain:
  == domain 1    score: 139.9 bits;  conditional E-value: 2.1e-44
   TIGR02398 109 eadwevfkkvnkafaeaaae....ea...aegatvwvhdynlwlvpgyirqkrpd...lkiaffhhtpfpsadvfnilpwreqivesllccdlvGfhipryvenfvaaarslvkvkivskvsvdekfiavGtalaeeevttaldtkdrlvkldaspvGtdperireavaaasveeriekireelagrklilsaervdytkGikellvayerllerreellgkvvlvvaavkaasgmkiyeelqseieelvGrinGrfarvdwtpvrlftralpyeelvaffaaadvawitplrdGlnlvakeyvaargl.rdGvlvlsefaGaavelkgavltnpyaakrmdeaieaalampkeeqqrrlkelfdaveaydvqdwaeellaevke 482
                 ++ w+ f+kvn afa    e    ++    + + +w+hdy l l p y+ +k       +  ff h pfp++++f  l   e+i++ +l  d+vGfh   + + f +a + +++++  +          vG  ++       +++ +r + ++ s v ++p+ + +a++ + ve   + +r+  + r ++  +e  +   G+  +l+ayerll+  +  + kvv+v+      s  +  + + +e+ ++v ri  +f        ++  ++lp  + +a + a+dv+ +tp+r+Gln    ey+ +++  + Gv++ sef+  +  l+ga+  np++ +     +++al+m  ee++ r     d v +    +w  ++l+++++
  MMETSP1061-20121228|4417_1 502 DDWWRAFQKVNMAFATVVEEivgqDTghmIDKTYLWIHDYHLALLPKYLCEKDRVtkyCRKVFFLHIPFPTSQIFRELECGEEILQGMLHADVVGFHAFDHARHFLNANKRIMGLNYEN---------LVGGLIG-------VNYMGRTILVSMSNVSIEPNMVDAAMKLPVVETECNLLRRTHGDRSIVCGVEVGQRLSGTSLKLLAYERLLQDYPTWQPKVVMVLRILLPGSRKRDEQITIRELRQIVQRIQEKFGTAVIDYKEIAGSTLPMSQRLALWNASDVLMLTPIREGLNHWPLEYIYSKRNtSPGVVIASEFSAVCSILNGALRVNPFDIQMTVTIMDKALSMDPEEREGRRYRDLDFVSNSPSDRWVRNVLRDMND 870
                 45699*********975433111133111577889**************9986551115678***************************************************998754.........3566665.......6788999999*******************************99*********99***********************************99999999999***************765544556678899********************************998761569************************887777789*****77777665555568999999999*9999998875 PP

>> TIGR00685  T6PP: trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   2.3e-26   2.3e-23       2     248 ..     948    1248 ..     947    1250 .. 0.73

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 2.3e-26
   TIGR00685    2 rkravlfDlDGTlseivkdPdaav...........vsdellevLqkLaarsdvalaliSGRkllekl.llvklpglvlageHGle....lkadgktqdvseleek..ipvlkkaavelreelaey.pgvvlErKkvalalHYRqadpelarkrvkellekilsakddfdlkvqdGkavvElkPrdvnKGeivkklleeadvsgisak.dvvvyLGDDlTDedaFrvvr...................................kleselGfksVkidsaekktaAkfalagvaeVleflell 248 
                  ++r+++ D+ GT+  +++ P + +           +++++le+L  L+ ++++++ + SG +  ++l +l+ + +l+la + G+     +++  + ++++  +       +k++a+ +  + + + +g+++    +++ + Y  +dpe +  ++ +l+ ++    + fd+++ + k +vE+ Pr++nKG ivkk+l +    +  ++ d+ ++LGDD+ De +F  v                                    ++     ++      ++k  +A++ +++ +eV++ l ll
  MMETSP1061-20121228|4417_1  948 KRRVIILDFNGTIV-LKEPPGKYLkreilgtsgnkPPPQVLEALALLCRDPRNTVYVNSGDSSENVLnALGHIHNLGLAVSNGAKfsppMQDKNEERRWQTFDLGvdWDAVKRVALPVLSKYTARsNGSFVKLTTFSIGWSYYSCDPEWGSLQASHLVLELEAELKAFDVRLVTLKGIVEIVPRKLNKGLIVKKVLRDISKTPHEPPiDFCLCLGDDISDEKMFTSVFsfiaemgdssaahldppvynadgsleepkpaltlaEKRIPDPMYCFACAVGKKPSSASMYVTDAQEVANALVLL 1248
                  67777777777774.3333332221111122222267899**************77*****9988762578899*********9833334555666777777755334578889999999999998***************************************************************************9976668*******************955555555555555555555555555554444332222222223333355666666666666666666666555 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0     1e-06     0.001     150     213 ..    1110    1171 ..     951    1175 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1e-06
   TIGR01484  150 kdleleailsrsnalqkegetllevlpagvdKgkalqalleeln.....lkkeeilafGDsgNDeemle 213 
                  +++ ++++l +        + ++e++p   +Kg +++++l+         + +++l++GD+  De m+ 
  MMETSP1061-20121228|4417_1 1110 ELKAFDVRLVT-------LKGIVEIVPRKLNKGLIVKKVLRDISktphePPIDFCLCLGDDISDEKMFT 1171
                  35666666654.......8**************999999998888888*******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.65u 0.20s 00:00:00.85 Elapsed: 00:00:00.82
# Mc/sec: 2044.22
//
Query:       MMETSP1061-20121228|4421_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.19s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 232.92
//
Query:       MMETSP1061-20121228|4419_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 2627.01
//
Query:       MMETSP1061-20121228|4420_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|4422_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    7.9   9.1        5.4    6.0   2.3    2.4  2  TIGR04101 CCGSCS: CCGSCS motif protein


Domain annotation for each model (and alignments):
>> TIGR04101  CCGSCS: CCGSCS motif protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.3    0.0013       5.4      28      50 ..       2      24 ..       1      26 [. 0.86
   2 ?    4.9   0.2    0.0028        12      11      38 ..      70      97 ..      66     103 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0013
   TIGR04101 28 qaeqseekvaaeieekkkpKHGe 50
                 ++++++++++e +++ k  HG+
  MMETSP1061-20121228|4422_1  2 TKTETKTETNTETNTNXKNNHGD 24
                56788899999999********9 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0028
   TIGR04101 11 kkkskakqekleleaieqaeqseekvaa 38
                k  ++a   k++ + +++++ +++++++
  MMETSP1061-20121228|4422_1 70 KTRAAAARRKTQNQTAQRQKDTNARANT 97
                5567788888888999999999998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 741.65
//
Query:       MMETSP1061-20121228|4423_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|4425_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 278.64
//
Query:       MMETSP1061-20121228|4428_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 318.97
//
Query:       MMETSP1061-20121228|4429_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 313.47
//
Query:       MMETSP1061-20121228|4430_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 254.88
//
Query:       MMETSP1061-20121228|4427_1  [L=1119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.16s 00:00:00.75 Elapsed: 00:00:00.72
# Mc/sec: 2051.33
//
Query:       MMETSP1061-20121228|4435_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 299.39
//
Query:       MMETSP1061-20121228|4432_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.56
# Mc/sec: 1268.04
//
Query:       MMETSP1061-20121228|4433_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-89  297.0   0.0    5.2e-87  290.6   0.0    2.8  2  TIGR02063 RNase_R: ribonuclease R
    2.7e-72  241.9   0.0      1e-70  236.6   0.0    2.7  2  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
    3.5e-45  152.0   0.0    9.6e-45  150.5   0.0    1.6  1  TIGR02062 RNase_B: exoribonuclease II


Domain annotation for each model (and alignments):
>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.01        14      68     124 ..     117     176 ..      98     199 .. 0.71
   2 !  290.6   0.0   3.8e-90   5.2e-87     121     657 ..     267     849 ..     238     891 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.01
   TIGR02063  68 lvkgtvea..nrkgfgflkpedeedeedi.fvakeelkkalkgdevlvkilekekekdka 124
                 +++gt++    r+g +f   +   +++d+    + e ++al+gd v+v++l  ++e++k 
  MMETSP1061-20121228|4433_1 117 MIRGTMRClpVRDGAAFCTCDRGTQTKDVvLDGPLERNRALDGDVVFVELLPPNQEEKKD 176
                 56666654226899999999885555555055689**************99877664333 PP

  == domain 2    score: 290.6 bits;  conditional E-value: 3.8e-90
   TIGR02063 121 kdkaeaevikilerakkkivGtfvkeke.iafvepddkklkqkilldke...kleeaeegdvvlvei..tkypeknkkaegkvveilGkkddkgidieiiirkheips.efpeevlkeaekipeev............eeeelkgRkDlrdlplvtIDgedakDlDDAvyvekkkdgnyklvVaIADVshYVkensalDkeAlkrgtSvYlvdrviPMLPekLSngiCSLnpnedrlalvvemeidkkGrvkkse.vy..eavikskarltYeevnkilegkkkl......e............ekekaklkeelkeleelakiLkkkrkkrgaidfdskEakiildeeg.kikeikvrerkeAekliEefMiaANeavaeflek.kklpliYRvHekPseekleklkef.lkelglklkkgtlekiqpkalskllekvkgrpeeelietllLRsmkkAkY......saeniGHFGLalekYtHFTSPIRRYpDLivHrllkkalekeeklskekeekleakleeiaehssktErradeaerdvndlkkaeymeekiGeefegvissvtsfGlFveLeentieGLv 657
                  +++e+  ++    a+k+ivGt++  k+ +a + + ++k++q++ l+++   k ++a eg + + +    +++e++k + ++ ve  G+  + + +  + + ++++++ efp +vl+e++ + ++             ++++++gR+D+r++ ++tID+ +akDlDDA++v  + +g+ +++V+IADVs++V +nsa+D eA++r t+vYlvdr+iPMLP+ L+   CSLn+n++rla+++   ++++G ++k + v   ++viks arl Y+ +++i+e+k +       +             ++ ++++ +++ ++e+a++ ++ r ++ga+ +d     + ld+++  +   +++   +++kl+Ee M+ AN  va+ l +  +  +  R He P+ e lek ++  ++++g++++  ++ +  +++l++l  + ++    + i +ll   mk A Y      s+ +  HF L++ +YtHFTSPIRRY+D+ivHrll+  ++ e+++  e+     ++++ ++++++++     +a+   +++  a y+++   ++  +v++s+    + v L++  i+ +v
  MMETSP1061-20121228|4433_1 267 IKSSESDSVDKSPVATKRIVGTLKRLKGgTALLTSSNNKCMQQFRLSDSdarKYADAPEGAIFAGKYvyGSWQETHKWPGCSNVEQFGHTGNIEDETAALLMEFGVDHgEFPTHVLEESQSVVASGqysngtesgwrpTQDMYEGRRDYRKQRIFTIDPTTAKDLDDALHVTDLGNGQVEIGVHIADVSFFVPPNSAIDLEAQRRCTTVYLVDRTIPMLPRPLCEVACSLNENVERLAFSCVWRMNRDGSLVKGQdVWygRSVIKSCARLDYSTAQNIIENKVAYpgeseiDgdlwptsrrptgGHTIDQVAADVRLMNEIAQARRRLRFRNGAVALDAVKLTFKLDDDReTPLMCEPYPIRDSNKLVEEYMLLANFLVAQRLIThTGPRACLRHHEPPDYEGLEKAADLaMEAIGFRIDI-ESSEAVQRSLNRLGRECQDPILLKCITELLKNPMKPANYiaagkfSEPEWAHFALHIPYYTHFTSPIRRYADVIVHRLLQASIDGEDTV--EEFPMDVKQISTVCDTCNEKKDGSRKAQERSDAVFLALYLRRFPKKKQLAVVTSIGMKAFTVFLPDLGISAIV 849
                 45666777777778899******9988768889999999*****9998755567788999999887512578888899999**************************999*********999764311111111222246789**********************************************************************************************************998765232348*******************98654111111111111111111123456788889999999999999*******************98751578999***********************998772566689**********9999887526789999996.58888999*****************************99333333445789*********************************77554..57777899*************9999*99999999999999887777777777777666666666666666665 PP

>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.019        25      25      71 ..     128     176 ..     110     183 .. 0.74
   2 !  236.6   0.0   7.4e-74     1e-70     191     630 ..     408     878 ..     380     891 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.019
   TIGR00358  25 ekgfgFlrvddddkkdyfi..ppeqlkkvlhGDlvlaqilskkekerre 71 
                 ++g +F  +d + +++  +   p + +++l+GD v + +l  +++e+++
  MMETSP1061-20121228|4433_1 128 RDGAAFCTCDRGTQTKDVVldGPLERNRALDGDVVFVELLPPNQEEKKD 176
                 7899999999876544333114667899*********999988888766 PP

  == domain 2    score: 236.6 bits;  conditional E-value: 7.4e-74
   TIGR00358 191 akktRedLtdlalVTiDsedakDlDDAvyvkkladkgfkLvVaIADvsaYvaenseldkeAkergssvYlpefviPmlPeeLSnelCSLnpnekRlvlvCeltidakgritek.ely..eavikskarltYdkVsdiLedd.........d.elkeey.........etlveqlkelaklsqllaekRkkrgaidlekketkvvldeegk.veeieaeerrkAekliEelmivANiaaArvlekkkea.liyrvHekpskkklqsllealaelkltlekvsaenvttrdiaalLeeekdrpeeelletlllRslkkAeykve......plgHFglgleeYahfTSPIRrYpDlivHRlikavlakeekttdtereklqeelekiaeevsdterrareaeRdvaDwlkaeylsdkvgeeFegvissvtrfGlfvrldengidglikistlen....dyyvfdkeklaligkkegk 630
                   ++R+d +++ + TiD+++akDlDDA+ v+ l +++ ++ V+IADvs++v  ns +d eA++r+++vYl+++ iPmlP+ L +  CSLn n++Rl+ +C   ++ +g + +   ++   +viks arl Y+  ++i+e++         d +l + +         ++++  ++ + +++q+++  R + ga+ l+     + ld++++ +   e    r+ +kl+Ee m++AN  +A+ l  +  + +  r He p+ + l+++ +  +e       ++  +   r +  l +e +d++  +++  ll+  +k A y +       +  HF+l    Y+hfTSPIRrY+D+ivHRl++a +  e   t +e     ++++++++++++ +   r+a+   +    a yl+    ++  +v+ s+    + v l+++gi++++     +n    + y + k   ++  k++ +
  MMETSP1061-20121228|4433_1 408 MYEGRRDYRKQRIFTIDPTTAKDLDDALHVTDLGNGQVEIGVHIADVSFFVPPNSAIDLEAQRRCTTVYLVDRTIPMLPRPLCEVACSLNENVERLAFSCVWRMNRDGSLVKGqDVWygRSVIKSCARLDYSTAQNIIENKvaypgeseiDgDLWPTSrrptgghtiDQVAADVRLMNEIAQARRRLRFRNGAVALDAVKLTFKLDDDREtPLMCEPYPIRDSNKLVEEYMLLANFLVAQRLITHTGPrACLRHHEPPDYEGLEKAADLAMEAIGFRIDIESSEAVQRSLNRLGRECQDPILLKCITELLKNPMKPANYIAAgkfsepEWAHFALHIPYYTHFTSPIRRYADVIVHRLLQASIDGE--DTVEEFPMDVKQISTVCDTCNEKKDGSRKAQERSDAVFLALYLRRFPKKKQLAVVTSIGMKAFTVFLPDLGISAIVYLDEHKNwieaEAYEVPKFGRRINLKRT-Q 878
                 4578********************************************************************************************************9876546653579******************973333322221233222211111111156888899999999999999****************99987652788999***********************9988887637899*******9888887766666555666666666677777778889999999*************998754222222578**********************************9..555555777889999*****999999999988888888899**99999999************************96654333332277777777777777776.4 PP

>> TIGR02062  RNase_B: exoribonuclease II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   0.0     7e-48   9.6e-45     189     531 ..     411     783 ..     395     826 .. 0.82

  Alignments for each domain:
  == domain 1    score: 150.5 bits;  conditional E-value: 7e-48
   TIGR02062 189 lredltaldfvtidsestkdlddalyieelangdlklivaiadPtayiaeeskldkaakkrgftnylPGfniPmlPrelsdelcslianevrPvlacsitiskdGnit..dkieffaatikskaklvydkvsdwleka..........ssaw....qPe....seeiaqqvrllaqlskarikwrkthallfkdrpdyrfelsekgevedi.kaekrrianriveeamiianicaakvlkeklg.fGifnthaGfdkkklenvvellkangalkvdveelatle.Gfcklrrele.....aletdyldsrir..ryqsfaeissepaPhfalGleeyatwtsPirkysdminhrllkavikketavkkPqedv 531
                  r d  +    tid +++kdlddal++ +l ng++++ v iad + ++ ++s +d +a++r+ t yl  + iPmlPr l++  csl++n  r ++ c+  +++dG++   +++ +  ++iks a+l y    + +e++          ++ w    +P      +++a  vrl++++++ar + r  +  +  d  +  f+l ++ e   + +    r +n++vee m+ an   a+ l ++ g       h   d + le++++l +     ++d+e   +++    +l re +        t+ l++ ++   y + +++s+    hfal +  y+ +tsPir+y+d+i hrll+a i +e +v++   dv
  MMETSP1061-20121228|4433_1 411 GRRDYRKQRIFTIDPTTAKDLDDALHVTDLGNGQVEIGVHIADVSFFVPPNSAIDLEAQRRCTTVYLVDRTIPMLPRPLCEVACSLNENVERLAFSCVWRMNRDGSLVkgQDVWYGRSVIKSCARLDYSTAQNIIENKvaypgeseidGDLWptsrRPTgghtIDQVAADVRLMNEIAQARRRLRFRNGAVALDAVKLTFKLDDDRETPLMcEPYPIRDSNKLVEEYMLLANFLVAQRLITHTGpRACLRHHEPPDYEGLEKAADLAMEAIGFRIDIESSEAVQrSLNRLGRECQdpillKCITELLKNPMKpaNYIAAGKFSEPEWAHFALHIPYYTHFTSPIRRYADVIVHRLLQASIDGEDTVEEFPMDV 783
                 47888888999**********************************************************************************************9862257778899*****************997333332222112353222343222235678889*******************************99988754413445799*************9988888877772578899999************999999999999988776256677776432211144678888877644799*******************************************9987776544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.56u 0.21s 00:00:00.77 Elapsed: 00:00:00.83
# Mc/sec: 1463.01
//
Query:       MMETSP1061-20121228|4436_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.49
# Mc/sec: 228.96
//
Query:       MMETSP1061-20121228|4438_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 290.38
//
Query:       MMETSP1061-20121228|4437_1  [L=1018]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1018 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.20s 00:00:00.67 Elapsed: 00:00:00.66
# Mc/sec: 2035.83
//
Query:       MMETSP1061-20121228|4441_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 431.96
//
Query:       MMETSP1061-20121228|4442_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-75  249.8   1.6      2e-69  232.1   1.1    2.1  2  TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase
      4e-23   80.1   0.0    5.7e-23   79.6   0.0    1.1  1  TIGR01475 ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
    3.2e-15   54.5   2.0    3.2e-15   54.5   1.4    1.5  2  TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase
      1e-06   26.2   0.7    1.6e-06   25.6   0.5    1.2  1  TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
    0.00016   19.2   0.1    0.00029   18.3   0.1    1.5  1  TIGR02056 ChlG: chlorophyll synthase ChlG


Domain annotation for each model (and alignments):
>> TIGR01474  ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.1   1.1   2.4e-72     2e-69      36     203 ..      19     190 ..       5     193 .. 0.94
   2 !   15.6   0.0   2.2e-06    0.0018     232     279 ..     284     331 ..     274     333 .. 0.92

  Alignments for each domain:
  == domain 1    score: 232.1 bits;  conditional E-value: 2.4e-72
   TIGR01474  36 llpalllLllftvGallmrgaGCviNDlvDrdlDkkVeRtksRPlasgavsvkqalllllvlllvalgvlllln...kltillgvaslalvliYPllKRitylpQlvLglafswgvllgfaavagklstaaiv.LylasilWtlgYDTiyamqDkedDakigvkstallfgd 203
                  lp+++lL lftvGa++mrgaGC+iNDl+DrdlD++V+Rtk+RPla+g +++ +a++ l+v+l  +lgvll l+   +++++ g asl++v++YPl+KR +++pQlvLgl+f+wg+ +g+aav+g+++  +++ Ly+++++Wt+gYDT+ya+qDk dDak+g++sta++fg+
  MMETSP1061-20121228|4442_1  19 VLPDPKLLGLFTVGAFVMRGAGCTINDLWDRDLDRRVTRTKTRPLAAGVLTPPKAVAWLAVQLSAGLGVLLSLQphtEYCFWWGAASLPIVVAYPLMKRCFDYPQLVLGLCFNWGAFMGWAAVHGSMDYGIVLpLYASGVAWTIGYDTLYAHQDKVDDAKLGLRSTAITFGR 190
                 68999*******************************************************************96222689*********************************************998876544************************************97 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 2.2e-06
   TIGR01474 232 vyylalavaalllvsqiakldikepeeclklFkaNnlvGlllfaglvl 279
                 vy ++++ a ++lv qi + d+++p++  ++F++N+ vG ++f ++++
  MMETSP1061-20121228|4442_1 284 VYAVGITGAYAHLVWQIRTADLNDPHNLAERFRSNAGVGGIVFGSILA 331
                 6779999***********************************998875 PP

>> TIGR01475  ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.6   0.0   6.9e-26   5.7e-23      32     199 ..      20     189 ..       7     192 .. 0.88

  Alignments for each domain:
  == domain 1    score: 79.6 bits;  conditional E-value: 6.9e-26
   TIGR01475  32 lislkklililvalvsaRtaamavnrlideeiDakNPRtknrelvsGkiskkeavtliil..slilfliasyfl.NklafiLspvvllvliiypylKRftalahlvLglvlglavlagavavigeisillvavllvigvvfwvagfDliyaiqDlefDkknglksiparfG 199
                 l+  k l l +v ++++R a+ ++n l d+++D++  Rtk r+l +G +   +av+ +++  s+ l ++ s++   + +f      l +++ yp++KR   +++lvLgl+   ++++g+ av g+++   +   l+++ v w++g+D++ya qD   D k gl+s ++ fG
  MMETSP1061-20121228|4442_1  20 LPDPKLLGLFTVGAFVMRGAGCTINDLWDRDLDRRVTRTKTRPLAAGVLTPPKAVAWLAVqlSAGLGVLLSLQPhTEYCFWWGAASLPIVVAYPLMKRCFDYPQLVLGLCFNWGAFMGWAAVHGSMDY-GIVLPLYASGVAWTIGYDTLYAHQDKVDDAKLGLRSTAITFG 189
                 7788899999***************************************98877666555115557677777641569*************************************************5.456668889999*****************************9 PP

>> TIGR01473  cyoE_ctaB: protoheme IX farnesyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   1.4   3.9e-18   3.2e-15      33     172 ..      22     162 ..       2     180 .. 0.84
   2 ?   -3.0   0.0       1.3     1e+03      10      30 ..     232     252 ..     230     262 .. 0.65

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 3.9e-18
   TIGR01473  33 nlllllltllgttlaaasanalNmvidrdiDkkMkRTknRplvsgkvspsealafglllgvlgvvlLallvnllaallvlagifl..yvvvYTlllKrktilniviGglaGavPpliGwaAvtgsisleall.LflilflWqp 172
                 ++ ll l ++g +++ ++++++N ++drd D+  +RTk Rpl++g ++p +a+a+ ++ + +g+ +L++ +++ +  +   g +    vv+Y  l+Kr   +  ++ gl     + +GwaAv gs++++ +l L++  ++W++
  MMETSP1061-20121228|4442_1  22 DPKLLGLFTVGAFVMRGAGCTINDLWDRDLDRRVTRTKTRPLAAGVLTPPKAVAWLAVQLSAGLGVLLS-LQPHTEYCFWWGAASlpIVVAYP-LMKRCFDYPQLVLGLCFNWGAFMGWAAVHGSMDYGIVLpLYASGVAWTI 162
                 56678999*********************************************************9999.77777766666555412688999.9***9999999999999****************9876547777777776 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.3
   TIGR01473  10 rlislvlltalagmllasksa 30 
                 r++  +++t++a+ lla ++ 
  MMETSP1061-20121228|4442_1 232 RVLHGLAATTYASWLLAGYND 252
                 667777788888888887764 PP

>> TIGR01476  chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.5     2e-09   1.6e-06      40     203 ..      25     190 ..      19     192 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2e-09
   TIGR01476  40 LlgmllaGP.lltGlsqavndyaDrdvDa..inePqrpiPsGaislrevlililvltvlglavalvlgrwvivlltvlGvvlaliyslePiklkrngWlGnalvalsyvglaWlaGhavfaaltleivvvaLlyslaa..aGilvlnDfksveGDrklGlrslpvalGv 203
                 Llg++  G  ++ G   ++nd  Drd+D       +rp+ +G ++ ++++  ++v + +gl+v l l++++       G+    i  + P+ +kr + + + +++l++   a++  +av +++ + i v+ L  s+ a   G  +l   +    D klGlrs ++++G 
  MMETSP1061-20121228|4442_1  25 LLGLFTVGAfVMRGAGCTINDLWDRDLDRrvTRTKTRPLAAGVLTPPKAVAWLAVQLSAGLGVLLSLQPHTE-YCFWWGAASLPIVVAYPL-MKRCFDYPQLVLGLCFNWGAFMGWAAVHGSMDYGI-VLPLYASGVAwtIGYDTLYAHQDKVDDAKLGLRSTAITFGR 190
                 7888888872578***************53256789********************************9994.444455555555555676.699**************999999999999998876.57787777762256679999999999***********9995 PP

>> TIGR02056  ChlG: chlorophyll synthase ChlG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.1   3.6e-07   0.00029      64     120 ..      34      92 ..      12     191 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.6e-07
   TIGR02056  64 plltgytqtlndfydreida..inepyrpipsgaisvpevvtqvvllllaglavafild 120
                  ++ g   t+nd++dr++d        rp+ +g ++ p+ v+ + + l agl+v   l+
  MMETSP1061-20121228|4442_1  34 FVMRGAGCTINDLWDRDLDRrvTRTKTRPLAAGVLTPPKAVAWLAVQLSAGLGVLLSLQ 92 
                 46789999***********63246789**************************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1215.69
//
Query:       MMETSP1061-20121228|4440_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       359  (0.0875183); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.16s 00:00:00.73 Elapsed: 00:00:00.53
# Mc/sec: 1808.00
//
Query:       MMETSP1061-20121228|4444_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 646.05
//
Query:       MMETSP1061-20121228|4445_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   11.5   3.6      0.037   11.3   2.5    1.2  1  TIGR02830 spore_III_AG: stage III sporulation protein AG


Domain annotation for each model (and alignments):
>> TIGR02830  spore_III_AG: stage III sporulation protein AG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   2.5   8.9e-06     0.037      78     116 ..      15      55 ..       6      56 .] 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.9e-06
   TIGR02830  78 dvevvvnlassee..kvyeknkskkqqtTeEtdkeggkRkv 116
                 +++v+vn++s++     +    +++ ++T+E+ ++ g+R v
  MMETSP1061-20121228|4445_1  15 NINVNVNVDSTSTsnAAATAAATATDNETNESSRTNGSRAV 55 
                 456666666665500555567788999************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 410.63
//
Query:       MMETSP1061-20121228|4447_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1685.69
//
Query:       MMETSP1061-20121228|4453_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1537.96
//
Query:       MMETSP1061-20121228|4454_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 805.13
//
Query:       MMETSP1061-20121228|4455_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-43  145.6   0.0    3.4e-42  142.7   0.0    1.9  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.7   0.0   8.3e-46   3.4e-42      45     305 ..     146     426 ..     116     430 .. 0.84

  Alignments for each domain:
  == domain 1    score: 142.7 bits;  conditional E-value: 8.3e-46
   TIGR01327  45 ivRSatkvteelleaa.ekLkvigRaGvGvDNidieaatkkGilvvNaPegntisaaElalalllalaRkipqadksvkekkWerkkflG......tElygktlGviG.lGriGsevakrakalgmkvl......ayD...Py..iseek..aeklgvellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt.dnklleldnvvvtpHlgAsteEaqenvavevaeevlealkgev 305
                 ++  + ++    +e+  +++k i  aG G +Ni ie++ kk i v N+P+ +t ++a  a++ +++ a ++ + ++ ++++  +r++f+G      +El gktlG++G  GriG++va+ a  lgm+v+      +++    +  +++++  a++  v+ ++d+ ell+ +D++++H+Pl+ +t+g  g+ ++ +mK++++++N++RG + +E+ L++ l eg +++a+lDv ++EPp  d+ l +l+n  ++pH+g    E+ ++      ++v  +++g +
  MMETSP1061-20121228|4455_1 146 LILKEMQLPPSAVERFsDSVKLICEAGTGYNNIPIETCQKKDIAVCNIPTYSTDAVAQTAITYIMNFAMNVFRQQDMLRAG--DRSNFTGpfalplMELSGKTLGLVGgSGRIGTRVAEIALVLGMRVVisrrerGHEnggSHlsLPDDHalANHPNVSVTTDMGELLECSDFVSIHTPLNAQTEGSFGRAQISQMKPTAYLINTSRGKVCNEDELIDCLREGLIAGAGLDVTASEPPVpDSGLWSLPNAWLSPHIGWRRLETRQRLVDMTRDNVAAYVRGAP 426
                 44444455555555544899********************************************************99987..89*****8777777**********648******************933333312222234115665522567789999****************************************************************************998**********************999998888888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 2275.49
//
Query:       MMETSP1061-20121228|4451_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       363  (0.0884934); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 1098.72
//
Query:       MMETSP1061-20121228|4457_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.31
# Mc/sec: 161.79
//
Query:       MMETSP1061-20121228|4458_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1758.44
//
Query:       MMETSP1061-20121228|4456_1  [L=958]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (958 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.50
# Mc/sec: 2528.91
//
Query:       MMETSP1061-20121228|4461_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-94  314.3   0.5    1.2e-91  305.2   0.4    2.0  1  TIGR00345 arsA: arsenite-activated ATPase ArsA
    4.4e-10   37.2   1.3    1.6e-07   28.7   0.2    2.5  3  TIGR01968 minD_bact: septum site-determining protein MinD
    2.5e-09   34.5   0.2    1.8e-07   28.4   0.1    2.3  2  TIGR01969 minD_arch: cell division ATPase MinD
    2.4e-08   31.5   0.5    4.5e-08   30.6   0.0    1.7  2  TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
    2.1e-06   25.1   0.3    4.3e-06   24.1   0.0    1.7  2  TIGR01287 nifH: nitrogenase iron protein
    2.8e-05   21.0   0.0     0.0005   16.8   0.0    2.0  2  TIGR03453 partition_RepA: plasmid partitioning protein RepA
    4.3e-05   20.9   0.0    0.00015   19.2   0.0    1.8  2  TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ
    0.00012   19.3   0.0    0.00019   18.6   0.0    1.4  1  TIGR02016 BchX: chlorophyllide reductase iron protein subunit X
    0.00026   18.4   0.2     0.0028   15.0   0.2    2.2  1  TIGR01007 eps_fam: capsular exopolysaccharide family
    0.00045   18.1   0.9    0.00045   18.1   0.6    2.0  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    0.00046   16.9   0.0     0.0018   15.0   0.0    1.9  2  TIGR00959 ffh: signal recognition particle protein
      0.002   15.3   0.1     0.0071   13.4   0.0    1.8  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
     0.0065   13.1   0.0      0.013   12.1   0.0    1.5  1  TIGR00416 sms: DNA repair protein RadA
  ------ inclusion threshold ------
      0.024   11.7   0.0      0.062   10.3   0.0    1.6  2  TIGR01420 pilT_fam: twitching motility protein
      0.025   11.5   0.0      0.043   10.7   0.0    1.3  1  TIGR03815 CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein


Domain annotation for each model (and alignments):
>> TIGR00345  arsA: arsenite-activated ATPase ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.2   0.4   4.4e-94   1.2e-91       1     297 [.      30     354 ..      30     356 .. 0.93

  Alignments for each domain:
  == domain 1    score: 305.2 bits;  conditional E-value: 4.4e-94
   TIGR00345   1 ffgGKGGVGKTtisaatairlaesgkkvllvSTDPAhslsdvfeeelGkearkvkgvenLsavEiDpqaaleeyraklkeqikenlslgldeleeqleeaals.PGideiaafdellkelkeaenefDvvifDtAPTGhtlrlLqlpevlskflekliklkeklgellkll...mgkee.....eeevlekleelkeqiealrevlsDpertsfvlVvipeklslkEseRavkeLkkygikvdavivNqvlp.eeaq.....................deflkarkelqkkylkeieekfe.dlevaevpllkeevvGleaLeklsktl 297
                 f+gGKGGVGKTt s+ ++++la+  kkvl+vSTDPAh+lsd+f +++G+e++ ++g++nLsa+EiD+++++ee++  ++eq +  +++g   l ++++e++ s PGide+++f el+k++++   +fDvv+fDtAPTGhtlrlL++p +l+k l k+++lk++ g l+      mg ++     ++ ++++lee+++ i++++++++Dp  t+fv+V+ipe+ls++E+eR+v+eL+k+gi+++ ++vNqvl+ e+++                     +  + ark++q ky  +  + +  d++v+ +pll  ev+G e+L+ +s++l
  MMETSP1061-20121228|4461_1  30 FVGGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTDPAHNLSDAFCQKIGREPTPIEGFDNLSAMEIDANNDMEEMQRTMAEQGADDEKDG--GLSSMMSELTNSiPGIDEAMSFSELMKQVQN--LDFDVVVFDTAPTGHTLRLLSFPTILEKALGKVMELKDRFGGLIGQAtamMGGGQnpgatQDAIVGRLEETRAVINKVNDAFQDPALTTFVCVCIPEFLSIYETERLVQELSKFGIDAHNIVVNQVLFpEKDAeelaewysgnkdslpseakeiCAKMLARKKMQDKYIGQCFDLYGdDFNVTLMPLLDYEVRGSEKLKDFSEFL 354
                 89***********************************************************************************9999..8999999988877******************..55*************************************999988776774444446777899****************************************************************96655477888888888888888888888888***************9963699**********************98 PP

>> TIGR01968  minD_bact: septum site-determining protein MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.2     6e-10   1.6e-07       6      39 ..      30      63 ..      27      70 .. 0.91
   2 ?   -3.5   0.0         4   1.1e+03     101     119 ..     140     159 ..     136     163 .. 0.66
   3 !    6.7   0.0    0.0031      0.84     137     173 ..     239     275 ..     221     284 .. 0.89

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 6e-10
   TIGR01968  6 vtsGkGGvGkttttanlgtalaklgkkvvlvdad 39
                   GkGGvGkttt+  lg+ lak+ kkv +v +d
  MMETSP1061-20121228|4461_1 30 FVGGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTD 63
                568****************************998 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 4
   TIGR01968 101 lkklvkelkee.fdyvlids 119
                 + +l+k++++  fd v+ d+
  MMETSP1061-20121228|4461_1 140 FSELMKQVQNLdFDVVVFDT 159
                 45677777765588888885 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0031
   TIGR01968 137 aivvttPevsavrdadrviGlleakeieeiklivnrl 173
                  + v  Pe  ++ +++r++  l++ +i+ ++++vn++
  MMETSP1061-20121228|4461_1 239 FVCVCIPEFLSIYETERLVQELSKFGIDAHNIVVNQV 275
                 467899*****************************86 PP

>> TIGR01969  minD_arch: cell division ATPase MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.1   6.5e-10   1.8e-07       5      38 ..      30      63 ..      27      70 .. 0.91
   2 ?    3.5   0.0     0.027       7.4     135     171 ..     240     276 ..     232     287 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 6.5e-10
   TIGR01969  5 iasGkGGtGkttvtanlgvaLaklGkkvlvlDaD 38
                ++ GkGG+Gktt++  lgv Lak  kkvl++ +D
  MMETSP1061-20121228|4461_1 30 FVGGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTD 63
                789****************************998 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.027
   TIGR01969 135 llvvnPeissitDalkvkivaeklgtkilGvvlnrvt 171
                 + v  Pe  si ++ ++   ++k g++   +v+n+v 
  MMETSP1061-20121228|4461_1 240 VCVCIPEFLSIYETERLVQELSKFGIDAHNIVVNQVL 276
                 67999*****************************984 PP

>> TIGR01281  DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.6e-10   4.5e-08       5      56 ..      31      84 ..      27     103 .. 0.81
   2 ?   -3.7   0.1       4.7   1.3e+03     107     122 ..     144     158 ..     141     160 .. 0.69

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.6e-10
   TIGR01281  5 vyGkGGiGksttssnlsvalakkGkkvlqiGcdpkhdstftltgkl..iptvid 56
                v GkGG+Gk+tts+ l v lak  kkvl +  dp h+ + ++++k+   pt i+
  MMETSP1061-20121228|4461_1 31 VGGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTDPAHNLSDAFCQKIgrEPTPIE 84
                77**********************************876655555422466555 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.7
   TIGR01281 107 lkeldvldeydvilfd 122
                 +k+++ l ++dv++fd
  MMETSP1061-20121228|4461_1 144 MKQVQNL-DFDVVVFD 158
                 5555555.58999999 PP

>> TIGR01287  nifH: nitrogenase iron protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.6e-08   4.3e-06       5      44 ..      31      70 ..      27     114 .. 0.88
   2 ?   -3.8   0.0       4.8   1.3e+03     101     122 ..     136     158 ..     132     159 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.6e-08
   TIGR01287  5 iyGkGGiGksttvqniaaalaeagkkvlvvGcdPkadstr 44
                + GkGG+Gk+tt++ +   la++ kkvl+v  dP ++ + 
  MMETSP1061-20121228|4461_1 31 VGGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTDPAHNLSD 70
                679*******************************987654 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 4.8
   TIGR01287 101 taidlleklgayed.dldvvlyd 122
                  a+++ e ++  ++ d dvv++d
  MMETSP1061-20121228|4461_1 136 EAMSFSELMKQVQNlDFDVVVFD 158
                 56667777777777788999988 PP

>> TIGR03453  partition_RepA: plasmid partitioning protein RepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.8e-06    0.0005     104     151 ..      26      72 ..      16      86 .. 0.86
   2 ?    1.8   0.0     0.065        18     226     245 ..     142     162 ..     125     174 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.8e-06
   TIGR03453 104 lqviavvnfkGGsgktttaahLaqylalrGyrvLavDlDPqaslsalf 151
                 lq + v   kGG gkttt+  L+ +la +  +vL v  DP   ls  f
  MMETSP1061-20121228|4461_1  26 LQWVFV-GGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTDPAHNLSDAF 72 
                 555544.46********************************9999766 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.065
   TIGR03453 226 ealaeved.dyDvvviDcpPq 245
                 e +++v++ d+Dvvv D++P+
  MMETSP1061-20121228|4461_1 142 ELMKQVQNlDFDVVVFDTAPT 162
                 5677787658**********7 PP

>> TIGR03371  cellulose_yhjQ: cellulose synthase operon protein YhjQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.5e-07   0.00015       7      48 ..      31      72 ..      27      85 .. 0.91
   2 ?   -1.8   0.0       1.4   3.9e+02     139     177 ..     238     274 ..     234     280 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 5.5e-07
   TIGR03371  7 vsvkGGvGkTtltAnLasalklsgeevlaidldpqnlLrlhf 48
                v+ kGGvGkTt +  L++ l++  ++vl++ +dp+  L+  f
  MMETSP1061-20121228|4461_1 31 VGGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTDPAHNLSDAF 72
                788*******************************99998666 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.4
   TIGR03371 139 lvlvvvnadaasyallqqqalellersaerkkarflinq 177
                 ++++v  ++  s +  ++ ++el +   + +++++++nq
  MMETSP1061-20121228|4461_1 238 TFVCVCIPEFLSIYETERLVQELSK--FGIDAHNIVVNQ 274
                 6789999999999999999999999..777889999998 PP

>> TIGR02016  BchX: chlorophyllide reductase iron protein subunit X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0     7e-07   0.00019       3      48 ..      29      74 ..      27     112 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 7e-07
   TIGR02016  3 iaiyGkGGiGksftttnlsaklallgkrvlqlGcdpkhdstsalfG 48
                + + GkGG+Gk+ t + l  +la+  k+vl +  dp h+ + a+  
  MMETSP1061-20121228|4461_1 29 VFVGGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTDPAHNLSDAFCQ 74
                5678**********************************98776654 PP

>> TIGR01007  eps_fam: capsular exopolysaccharide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.2     1e-05    0.0028      26     139 ..      34     163 ..      21     168 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1e-05
   TIGR01007  26 kageGkstvsaniavafaqaGyktLliDgDlrksv....lsgvfksrnkikGLtnllsgkadlsd...aiketei.enLtvitaGpvpPnPteLlqs.......kkfkelletlrky.fDyiiiDtpPig 139
                 k g Gk+t+s  + v +a++ +k+L++ +D  +       + + ++   i+G+ nl   + d ++    ++ t   +  +  + G ++   +eL +s        +f+el++++++  fD+++ Dt+P g
  MMETSP1061-20121228|4461_1  34 KGGVGKTTTSCCLGVQLAKTRKKVLIVSTDPAHNLsdafCQKIGREPTPIEGFDNLSAMEIDANNdmeEMQRTMAeQGADDEKDGGLSSMMSELTNSipgideaMSFSELMKQVQNLdFDVVVFDTAPTG 163
                 6688************************99665540001556666778899998886655555440113455666245677788999999999987644443335799****999855**********87 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.6   1.7e-06   0.00045     201     237 ..      28      63 ..      10      77 .. 0.81
   2 ?   -1.4   0.0       1.4   3.9e+02     116     147 ..      99     127 ..      64     156 .. 0.57

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.7e-06
   TIGR03499 201 iaLv.GptGvGKTTTlAKLAarfvlehgkkkValiTtD 237
                  ++v G  GvGKTTT   L+ +++ +  +kkV +++tD
  MMETSP1061-20121228|4461_1  28 WVFVgGKGGVGKTTTSCCLGVQLAKT--RKKVLIVSTD 63 
                 455526889**************976..779******* PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.4
   TIGR03499 116 elkalkellekqlselaleeedperakllkkl 147
                 +++++++++ +q +    +e+d+  ++++++l
  MMETSP1061-20121228|4461_1  99 DMEEMQRTMAEQGAD---DEKDGGLSSMMSEL 127
                 333333333333332...23333333333333 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.7e-06    0.0018      96     138 ..      23      64 ..      12      95 .. 0.80
   2 ?   -1.2   0.0      0.54   1.5e+02     173     191 ..     142     160 ..     129     164 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.7e-06
   TIGR00959  96 ekkpavillv.GLqGsGKtttaaKlakklkkkekkkvllvalDl 138
                 +k    +++v G  G GKttt+  l  + + k++kkvl+v++D 
  MMETSP1061-20121228|4461_1  23 QK-SLQWVFVgGKGGVGKTTTSCCLGVQ-LAKTRKKVLIVSTDP 64 
                 34.4455555056678***********8.66789********95 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.54
   TIGR00959 173 ealeeakeekvdvvivDta 191
                 e ++++++  +dvv+ Dta
  MMETSP1061-20121228|4461_1 142 ELMKQVQNLDFDVVVFDTA 160
                 668999999*********8 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.6e-05    0.0071      74     116 ..      21      63 ..       4      67 .. 0.78
   2 ?   -1.7   0.0       1.1     3e+02     154     170 ..     144     160 ..     131     169 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.6e-05
   TIGR00064  74 keekkpnvillvGvNGvGKTttiaKlakllkkegkkvllaAgD 116
                  ++k+++ + + G  GvGKTtt   l  +l+k+ kkvl++ +D
  MMETSP1061-20121228|4461_1  21 IDQKSLQWVFVGGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTD 63 
                 4444455445556789***********************9998 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.1
   TIGR00064 154 ikkakaknidvvliDTa 170
                 +k+ ++ + dvv+ DTa
  MMETSP1061-20121228|4461_1 144 MKQVQNLDFDVVVFDTA 160
                 56677778999999999 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   4.8e-05     0.013      97     133 ..      29      65 ..      24     109 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.8e-05
   TIGR00416  97 iliGGdPGiGkstlllqvaaqlaknskkvlyvsgees 133
                 +++GG+ G+Gk+t      +qlak +kkvl vs++ +
  MMETSP1061-20121228|4461_1  29 VFVGGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTDPA 65 
                 78*******************************9865 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00023     0.062     101     161 ..       3      65 ..       1      72 [. 0.87
   2 ?   -2.0   0.0       1.3   3.6e+02      87     132 ..     116     163 ..      88     168 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00023
   TIGR01420 101 kiptleelglp.evlkelaekk.rGlilvtGptGsGKsttlAslidyinkekakhiltiEDPi 161
                 +i ++++ +lp + lk+++++k    ++v G+ G GK+tt   l  ++ k+++k ++   DP 
  MMETSP1061-20121228|4461_1   3 DIADIDDTDLPePSLKNIIDQKsLQWVFVGGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTDPA 65 
                 68889999999889999999884678******************9999999999999888885 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.3
   TIGR01420  87 qrgavalvlRvipskiptlee.lglpevlkelaekkrGlilv.tGptG 132
                 + g+ + ++  ++++ip ++e +   e +k++ + +  ++++ t ptG
  MMETSP1061-20121228|4461_1 116 KDGGLSSMMSELTNSIPGIDEaMSFSELMKQVQNLDFDVVVFdTAPTG 163
                 446677788888888888865367778888888877555544366776 PP

>> TIGR03815  CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00016     0.043     117     151 ..      31      65 ..      22      67 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00016
   TIGR03815 117 vggrGGaGAStlAaalAlaaarsglrtlLvDadPl 151
                 vgg+GG G +t ++ l+++ a+ + ++l+v +dP 
  MMETSP1061-20121228|4461_1  31 VGGKGGVGKTTTSCCLGVQLAKTRKKVLIVSTDPA 65 
                 8********************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.27
# Mc/sec: 1769.63
//
Query:       MMETSP1061-20121228|4463_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|4465_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 560.95
//
Query:       MMETSP1061-20121228|4467_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|4471_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|4468_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2111.83
//
Query:       MMETSP1061-20121228|4466_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-200  666.1   0.0   1.3e-200  665.9   0.0    1.0  1  TIGR02411 leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase
    4.8e-24   82.5   0.1    1.5e-23   80.9   0.1    1.5  1  TIGR02412 pepN_strep_liv: aminopeptidase N
    2.4e-19   66.8   0.0    3.6e-19   66.2   0.0    1.2  1  TIGR02414 pepN_proteo: aminopeptidase N


Domain annotation for each model (and alignments):
>> TIGR02411  leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  665.9   0.0  9.8e-204  1.3e-200       1     600 []       3     611 ..       3     611 .. 0.95

  Alignments for each domain:
  == domain 1    score: 665.9 bits;  conditional E-value: 9.8e-204
   TIGR02411   1 dpsslsnykdvkvkktelnlkvdfdkkklaGsvtyklkskeenkeklvLdtsyleikevt.inglkadfe...ieerkealGsklkislpsetsknkelelkieyettdkctaLqflepeqtkGkkaPylfsqcqaiharsllPcfdtPsvkstydakvesp..lavllsglrke.t.skdegk..ylfkqkvPiPayLvalasGdLasapiGprssvysekvelekcqyefekdtekflkvaeelif.pyvWkkydllvlppsfPyGGmenPnltfatPtLiagdrsnvdviahelahsWsGnLvtnkswehfWLneGftvylerkivGaleGeke.rhfsaligwneLqesvktlkkdp.eytkLvvdLkdndPddafssvPyekGsnlLfyleqllGGkaefdpflkaylkkfayksldtkqfkdvLyeyfkdkkkvdkldavdWetwlyseGlPpvkPkfdttLadecykLadkWvdaakddlsefnakdikdlsseqlvlfLekllekkdavalkeeaikklediyslaasknaevkfrlfkllikakleeelkelaellgtvgrmkfvrPiyrlLnay.vdkelaietfekfkdsyhpickalvekdL 600
                 d +s+s++++  v++++++++vdf+k+ l  ++ty++++ ++n + l Ldt +l+i+ ++  +g++  f+   i   k++lG +l+i+lp   + + ++++++ y+tt++c+aLq+l p qt+Gkk+Pylf+qcqaiharsl+Pc+d  +vk+ty a+  +p   ++++s+l k+ t  ++ +     ++q+vPi +yL+ala+G+L+ + i +r  ++se+  +e+++yef+ +te fl +ae + + +y W++ydll lppsfPyGGmenP+ltf+tPtL+agd+s++dv+ahe+ahsW+GnLvtn +w+hfWLneG+t +lerki+ +++ +++  +f a+ g ++L ++v+ +++   e t Lv +  d dPdd+fss+PyekG+++L yle+l+G + ef++f +ay+ kfa k+l+ ++fkd++ ++f+++ kv +   +dW+tw+y++G+Ppv P  d+++a +  +La++W d+ +d +s  +++ ++++   q + fL+ l  k+ + +lk ++ ++++ +y l++s+n+e+ fr+ +l+i a+ e++++ + ++++++grmkfvrP+yr L      +++a++tf kfkd yhpi+++++  dL
  MMETSP1061-20121228|4466_1   3 DLTSYSKPEEAVVTHLDWKISVDFAKERLFSEATYSVHVVQTNATILTLDTAHLDIEAAKdADGNPLSFTlhpIVGDKSHLGRRLEIDLPPRGNDETDCKVTVVYSTTNQCSALQWLPPSQTAGKKHPYLFTQCQAIHARSLVPCQDRCGVKMTYSATATVPgwATCVMSALSKGeTaPEGGSDklCHWEQPVPISSYLLALAVGELTKKTISERCAIWSEPSIVESAAYEFS-ETEVFLSTAEAIAGrEYAWGRYDLLCLPPSFPYGGMENPCLTFVTPTLLAGDKSLADVVAHEIAHSWTGNLVTNATWDHFWLNEGWTKWLERKIMARMKNNPKlLDFGAMKGRKDLIDAVNRFSESApENTCLVLNNGDGDPDDSFSSIPYEKGFTFLLYLERLVG-TPEFEAFFQAYIAKFASKTLTSTDFKDFFLQHFENDPKVGE---IDWDTWFYGQGMPPVLPPLDQSMAKASTDLASEWYDVDRDGKSCPDTNAMSSWACGQITCFLDALELKTAEKSLKVSTLRAMDGLYGLSESRNSEILFRYCQLAIAAEDESIIPIVFRFMTSQGRMKFVRPLYRSLVRSkMGRDIAVSTFLKFKDVYHPIAAKMIAIDL 611
                 6689*****************************************************9863678999988222457899***********99999**************************************************************99999989********99754444333113478*******************************************.************8747**********************************************************************************9986527*****************998655*************************************9.678********************************888776...********************************************************************9******************************************************************9887689***********************9987 PP

>> TIGR02412  pepN_strep_liv: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.1   1.1e-26   1.5e-23     118     421 ..     130     428 ..     123     484 .. 0.78

  Alignments for each domain:
  == domain 1    score: 80.9 bits;  conditional E-value: 1.1e-26
   TIGR02412 118 vYlytqfevadarrvfavFdqPDlKAsfelsvkaPedWt..Visnsteee.vtteeadrvwefeetPklstYltavaaGPyvsvqkeaesiplgiyaRkSlaeyldadaifditrqgldfyeekFgipyPfkkYDqvfv.PefnaGAmENaGlVtfaeefvfraevtdaeketrakvilHElAHmWFGdlVtmrWWddlWLnEsFAeymgalasaeateytdaWttfav..qrKawaYeaDqlpttHPivadv.adle..dalsnfDgitYaKGASvLkqLvayvGeeaFlagvnayfkryafgnatLdDlid 421
                  Yl+tq+++  ar +  + d   +K +++ + ++P +W   V+s  ++ e  ++  +d++ + e+  ++s+Yl+a+a+G    + k++ s    i++  S+ e   a + f  t   l   e+  g  y + +YD + + P f +G mEN+ + tf    +       a  + +a v++HE+AH W G+lVt   Wd +WLnE + ++++    a+  +  +   +f +   rK      ++ + + P ++ +  +    d  + f +i Y+KG   L  L  +vG  +F a  +ay++++a +  t  D+ d
  MMETSP1061-20121228|4466_1 130 PYLFTQCQAIHARSLVPCQDRCGVKMTYSATATVP-GWAtcVMSALSKGEtAPEGGSDKLCHWEQPVPISSYLLALAVGE---LTKKTISERCAIWSEPSIVES--AAYEFSETEVFLSTAEAIAGREYAWGRYDLLCLpPSFPYGGMENP-CLTFVTPTLL------AGDKSLADVVAHEIAHSWTGNLVTNATWDHFWLNEGWTKWLERKIMARMKNNPKL-LDFGAmkGRKDLIDAVNRFSESAPENTCLvLNNGdgDPDDSFSSIPYEKGFTFLLYLERLVGTPEFEAFFQAYIAKFASKTLTSTDFKD 428
                 6**********************************.67534666655544155556778888889899***********6...556666777899***999875..45579************************9977368********9.6787665554......456789*************************************999999887665.45544114455555556667777766433122221256799*************************99999999999876555444432 PP

>> TIGR02414  pepN_proteo: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   2.7e-22   3.6e-19     109     442 ..     131     457 ..      98     476 .. 0.88

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 2.7e-22
   TIGR02414 109 lfctqCEaeGFRrityflDRPdvlskytvtieAdkkkypvl..LsnGnkieseeledgrhlaeweDPfkkPsYLFAlvAGdlkvledkfitksgrevalevyveekkedkaefalesLkkamkwDEevfglEyDLdifmivAvd.dFnmGAmEnkgLniFnsklvLAdpetatDadyeriesviaHEYFHnwtGnRvtcRDWFqlslkEGltvfRdqefsadmtsr.......avk.RiedvkllravqFaEDagplaHPvrPesyveinnfytatvYekGaEviRmlktllGeeafrkgmdlYfkrhDGqavtvedfvaaledasgkd....leqfkrWysqaGtPel 442
                  ++tqC a   R +    DR  v  +y+ t +    +  v+  Ls G++  +    +  +l +we P +  sYL Al  G+l++      t s r    ++++e+   + a++ ++  +  +   E   g+Ey   ++ +  +   F  G mEn  L  F + ++LA  ++  D        v+aHE  H wtGn vt   W  + l EG t + ++++ a m+++       a+k R + ++++  + F E a  ++  v  +   + ++ +    YekG   +  l+ l+G+++f++ ++ Y++++  ++ t  df   + +  ++d       +  W+   G P +
  MMETSP1061-20121228|4466_1 131 YLFTQCQAIHARSLVPCQDRCGVKMTYSATATVPGWATCVMsaLSKGETAPE---GGSDKLCHWEQPVPISSYLLALAVGELTK-----KTISER---CAIWSEPSIVESAAYEFSETEVFLSTAEAIAGREYAWGRYDLLCLPpSFPYGGMENPCLT-FVTPTLLAGDKSLAD--------VVAHEIAHSWTGNLVTNATWDHFWLNEGWTKWLERKIMARMKNNpklldfgAMKgRKDLIDAV--NRFSESAPENTCLVLNNGDGDPDDSFSSIPYEKGFTFLLYLERLVGTPEFEAFFQAYIAKFASKTLTSTDFKDFFLQHFENDpkvgEIDWDTWFYGQGMPPV 457
                 589************************9999888776666544788875544...4667899*******************976.....355665...589***************************************999538***********6.899999998877655........9*****************************************997788777554144444544..579999999999999999999999***********************************************9999999988866656679999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 2390.47
//
Query:       MMETSP1061-20121228|4469_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2074.11
//
Query:       MMETSP1061-20121228|4472_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1492.49
//
Query:       MMETSP1061-20121228|4474_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 1083.41
//
Query:       MMETSP1061-20121228|4473_1  [L=1045]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1045 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       330  (0.0804486); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.14s 00:00:01.02 Elapsed: 00:00:00.65
# Mc/sec: 2121.98
//
Query:       MMETSP1061-20121228|4476_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1251.03
//
Query:       MMETSP1061-20121228|4478_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.2    3.6   7.0        3.6    3.4   4.8    1.0  1  TIGR00930 2a30: K-Cl cotransporter
        4.6    3.3  12.4        4.4    3.4   8.6    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        7.8    2.7  15.4        7.9    2.6  10.7    1.0  1  TIGR00617 rpa1: replication factor-a protein 1 (rpa1)


Domain annotation for each model (and alignments):
>> TIGR00930  2a30: K-Cl cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   4.8    0.0026       3.6      16      79 ..       5      69 ..       1      74 [. 0.49

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0026
   TIGR00930 16 kakeeeklnrpsleelldlldkvsslleklaseteeeqe.akeheeaeeaeetkekekakavklG 79
                ++k +++ n +s +++ +  +++s+  ++++s+ +++++ +k+++++++a ++k k+k+k++ +G
  MMETSP1061-20121228|4478_1  5 NTKPQKNNNYKSQKNNINNNNNNSNSNSNSNSNSNRSNNkNKNNNNNNNAAKKKAKPKPKVTTVG 69
                34444555555555555555555555444444444443303444455555666666666666666 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   8.6    0.0032       4.4     329     392 ..       7      66 ..       1      79 [] 0.31

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0032
   TIGR02442 329 kkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkif 392
                 k++++++ ++++++  ++++   ++++++++ + +++++++k+++++++++a +++++p+ k++
  MMETSP1061-20121228|4478_1   7 KPQKNNNYKSQKNNI-NNNN---NNSNSNSNSNSNSNRSNNKNKNNNNNNNAAKKKAKPKPKVT 66 
                 111111111111111.1111...11112222223333333333333333333334444444443 PP

>> TIGR00617  rpa1: replication factor-a protein 1 (rpa1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  10.7    0.0058       7.9     118     185 ..       7      70 ..       1      77 [. 0.34

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0058
   TIGR00617 118 veeekv.llsekeeqelaskpaeksatspaakkakke.vaskanaaseeakvaaeaarsastr.kvvpies 185
                 ++++++ ++s+k++ +++       +++++++ ++++   + +n+++++++++++a++ a+++ kv+ +  
  MMETSP1061-20121228|4478_1   7 KPQKNNnYKSQKNNINNN-------NNNSNSNSNSNSnSNRSNNKNKNNNNNNNAAKKKAKPKpKVTTVGD 70 
                 222222122222222222.......2222222222221122222222222244455555555545666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       413  (0.100683); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 453.35
//
Query:       MMETSP1061-20121228|4479_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.72    6.3   4.7       0.77    6.2   3.3    1.2  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.3   0.00019      0.77     278     294 ..      43      59 ..      15      66 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00019
   TIGR02031 278 epeqeeppppPpPpepe 294
                 +++ e++pppPpPp+p+
  MMETSP1061-20121228|4479_1  43 QQQGEQQPPPPPPPPPP 59 
                 22223333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 626.95
//
Query:       MMETSP1061-20121228|4477_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1331.37
//
Query:       MMETSP1061-20121228|4483_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.30
# Mc/sec: 338.77
//
Query:       MMETSP1061-20121228|4482_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-24   81.9   0.0    3.4e-12   43.5   0.0    2.1  2  TIGR00717 rpsA: ribosomal protein S1
    2.4e-13   47.2   0.1    1.1e-07   28.5   0.0    2.3  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    2.4e-07   27.3   0.0    2.9e-06   23.7   0.0    2.4  2  TIGR02063 RNase_R: ribonuclease R
    1.3e-06   26.0   0.0    0.00017   19.1   0.0    2.5  2  TIGR00448 rpoE: DNA-directed RNA polymerase
      1e-05   22.0   0.0    0.00025   17.4   0.0    2.0  2  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
     0.0048   14.1   0.4     0.0078   13.4   0.3    1.2  1  TIGR03454 partition_RepB: plasmid partitioning protein RepB


Domain annotation for each model (and alignments):
>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0     5e-15   3.4e-12     270     345 ..     190     266 ..     145     273 .. 0.92
   2 !   36.3   0.0   7.4e-13     5e-10     184     253 ..     295     366 ..     283     372 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 5e-15
   TIGR00717 270 fkvgkkikgkvtnladyGvfveieegiEGlvhvsElsWekknskPskvvkvGdevevkvleideerrrvsls.lKqv 345
                 + +g +++g v  l++yG++v++  + +Gl+h+s +  +  +++P++vv+ Gdev v v +  +e ++++l+ lK +
  MMETSP1061-20121228|4482_1 190 YFPGMEVTGTVISLTKYGAYVDVGTECDGLLHISQMTRDFFVEHPRQVVSPGDEVTVTVRSASPELKKLQLTmLKDA 266
                 77899****************************************************************99834555 PP

  == domain 2    score: 36.3 bits;  conditional E-value: 7.4e-13
   TIGR00717 184 klkegeevkGvVknitdfgafvdlgg.vdgllhitdls.wkrvkhPseivevgdevkvkvikvDkekkrisl 253
                 + + ++e+ G  +++tdfga+v++g+ vd++lh  d   w   k Pse++e g++v+v v  +D e++ri +
  MMETSP1061-20121228|4482_1 295 EFELDDELWGELRRVTDFGAYVEVGAeVDAFLHFMDHPlWEDGKTPSEFMERGQRVRVWVADLDTEQRRIRV 366
                 566778889999999999999999865999999988644999999999999999999999999999999987 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   0.7       1.6   1.1e+03     249     274 ..     139     163 ..     120     177 .. 0.40
   2 !   28.5   0.0   1.6e-10   1.1e-07     620     677 ..     194     252 ..     188     264 .. 0.87
   3 !   16.3   0.0     8e-07   0.00055     615     684 ..     295     366 ..     290     370 .. 0.85

  Alignments for each domain:
  == domain 1    score: -4.5 bits;  conditional E-value: 1.6
   TIGR03591 249 alkieekqereealeevkeevleela 274
                 a +i +k++re a e+ +  ++ +++
  MMETSP1061-20121228|4482_1 139 AKAIVNKKKREPAAEKKRR-MMMKFK 163
                 2223334444433333332.222222 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 1.6e-10
   TIGR03591 620 kvyegkvvkiadfgafvellpgkdglvhiSelaee.rvekvedvlkegdevkvkvleid 677
                    +g+v++++++ga+v++  + dgl+hiS+++++  ve+ ++v++ gdev+v v +  
  MMETSP1061-20121228|4482_1 194 MEVTGTVISLTKYGAYVDVGTECDGLLHISQMTRDfFVEHPRQVVSPGDEVTVTVRSAS 252
                 5678****************************998679****************98765 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 8e-07
   TIGR03591 615 evevgkvyegkvvkiadfgafvellpgkdglvhiSel.aeervekvedvlkegdevkvkvleidk.kgrvkl 684
                 e e+++   g++ +++dfga+ve+  + d+++h  +   +e  ++ ++ ++ g++v+v v+++d+ + r+++
  MMETSP1061-20121228|4482_1 295 EFELDDELWGELRRVTDFGAYVEVGAEVDAFLHFMDHpLWEDGKTPSEFMERGQRVRVWVADLDTeQRRIRV 366
                 678888999************************8765167899999******************83445655 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.2e-09   2.9e-06     629     710 ..     193     263 ..     133     264 .. 0.86
   2 ?    1.0   0.0     0.031        21     668     707 ..     327     366 ..     297     369 .. 0.68

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 4.2e-09
   TIGR02063 629 GeefegvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvGertgkvfrlGdevkvkvvevdkeekkidfelv 710
                 G e  g + s+t++G +v + + +++GL his+++ d+++ ++++          v + Gdev+v v +++ e kk++++++
  MMETSP1061-20121228|4482_1 193 GMEVTGTVISLTKYGAYVDVGT-ECDGLLHISQMTRDFFVEHPRQ----------VVSPGDEVTVTVRSASPELKKLQLTML 263
                 77889*****************.****************977765..........556789999999999999999988876 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.031
   TIGR02063 668 efdeknlalvGertgkvfrlGdevkvkvvevdkeekkidf 707
                 +f ++ l   G+   +  + G++v+v v++ d+e+++i++
  MMETSP1061-20121228|4482_1 327 HFMDHPLWEDGKTPSEFMERGQRVRVWVADLDTEQRRIRV 366
                 4455555555666677777899999999999999999876 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   2.5e-07   0.00017      85     125 ..     196     237 ..     187     263 .. 0.87
   2 !    4.4   0.0    0.0081       5.6      86     110 ..     303     328 ..     295     351 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.5e-07
   TIGR00448  85 veGevieivefGafvslGp.lddllhvsqvlddyvvydpkke 125
                 v+G vi ++++Ga+v +G   d+llh+sq++ d+ v  p++ 
  MMETSP1061-20121228|4482_1 196 VTGTVISLTKYGAYVDVGTeCDGLLHISQMTRDFFVEHPRQV 237
                 89***************9658************998877765 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0081
   TIGR00448  86 eGevieivefGafvslGp.lddllhv 110
                  Ge+  +++fGa+v +G  +d++lh 
  MMETSP1061-20121228|4482_1 303 WGELRRVTDFGAYVEVGAeVDAFLHF 328
                 69999***********9658999986 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   3.7e-07   0.00025     650     709 ..     194     250 ..     187     261 .. 0.88
   2 ?    2.4   0.0     0.012       8.5     650     713 ..     300     360 ..     287     367 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 3.7e-07
   TIGR02696 650 erflgtvvkttafgafvsllpgkdgllhiseirkladgkrvekvedvlsvgekikveiad 709
                  +  gtv+  t +ga+v +    dgllhis   +++    ve+  +v+s g+ ++v ++ 
  MMETSP1061-20121228|4482_1 194 MEVTGTVISLTKYGAYVDVGTECDGLLHIS---QMTRDFFVEHPRQVVSPGDEVTVTVRS 250
                 5678**************************...67778899*************999875 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.012
   TIGR02696 650 erflgtvvkttafgafvsllpgkdgllhiseirkladgkrvekvedvlsvgekikveiadiddr 713
                 ++  g + + t fga+v +    d +lh  +    +dgk      + ++ g++++v +ad+d  
  MMETSP1061-20121228|4482_1 300 DELWGELRRVTDFGAYVEVGAEVDAFLHFMDHPLWEDGKTP---SEFMERGQRVRVWVADLDTE 360
                 56667888999*******************999999**965...678999**********9964 PP

>> TIGR03454  partition_RepB: plasmid partitioning protein RepB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.3   1.1e-05    0.0078     217     276 ..     116     177 ..     113     192 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.1e-05
   TIGR03454 217 giGRrrWleLaeklekeeada.eakeavesaafk.alesderfeallaalskkakrskaekk 276
                 g GR rW++L+ +++k+ +++ +ak+ v++++++ a+e ++r+++ +++l++ +k+    ++
  MMETSP1061-20121228|4482_1 116 GKGRSRWENLKPSIKKRLIAKgQAKAIVNKKKREpAAEKKRRMMMKFKELQRVKKKDSRIQR 177
                 67**************8776615555555544442566777888888888888877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.52
# Mc/sec: 967.07
//
Query:       MMETSP1061-20121228|4485_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 2008.71
//
Query:       MMETSP1061-20121228|4487_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 341.97
//
Query:       MMETSP1061-20121228|4486_1  [L=1155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.53
# Mc/sec: 2876.37
//
Query:       MMETSP1061-20121228|4492_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1061-20121228|4490_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1379.89
//
Query:       MMETSP1061-20121228|4488_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 2050.54
//
Query:       MMETSP1061-20121228|4493_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2039.00
//
Query:       MMETSP1061-20121228|4489_1  [L=928]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (928 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 3402.39
//
Query:       MMETSP1061-20121228|4497_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 2755.93
//
Query:       MMETSP1061-20121228|4499_1  [L=1103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 3934.70
//
Query:       MMETSP1061-20121228|4502_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.19s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 2418.38
//
Query:       MMETSP1061-20121228|4503_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-20   72.0   0.0      2e-20   71.3   0.0    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.6e-14   49.9   0.6    3.6e-14   49.9   0.4    2.1  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0   9.9e-24     2e-20       3      72 ..     107     176 ..     105     191 .. 0.93

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 9.9e-24
   TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleg 72 
                 ++iL+++  A++++ikkAYr+l+ kyHPD+n+g++ ae+kf  +++Aye L++ee r++Y+++g+ + ++
  MMETSP1061-20121228|4503_1 107 FNILEIDSGADAKTIKKAYRSLSLKYHPDKNPGNRVAEAKFMMVSKAYESLTNEESRSNYEKYGNPDGKQ 176
                 78**************************************************************876655 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.4   1.8e-17   3.6e-14       3      68 ..     105     171 ..     104     179 .. 0.93
   2 ?  -11.9   8.8         2   4.1e+03     144     200 ..     566     627 ..     553     634 .. 0.70

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 1.8e-17
   TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkraryDkyGh 68 
                 D +++L+id  ad + ikka+r L+ kyhPD+n     a+  f  +  a++ L+n + r +y+kyG 
  MMETSP1061-20121228|4503_1 105 DPFNILEIDSGADAKTIKKAYRSLSLKYHPDKNPGnRVAEAKFMMVSKAYESLTNEESRSNYEKYGN 171
                 56899****************************987889999************************6 PP

  == domain 2    score: -11.9 bits;  conditional E-value: 2
   TIGR03835 144 danetrlfddtlDdqleesvktasaddaerlfddnke.......psvtaGldde.lqsespapee 200
                 d  e  lf++ l++++e+  +  s dd++ + dd+ +       p+ +a l+ + l+ +  ++++
  MMETSP1061-20121228|4503_1 566 D--EPTLFEEMLNANVEDDSDDDSDDDSDDESDDDDDkpaeaiaPKSEADLKKDrLKNS-RNQDD 627
                 3..55789999999999999999999987777777777788888888888865414444.33333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 2733.45
//
Query:       MMETSP1061-20121228|4504_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1965.69
//
Query:       MMETSP1061-20121228|4507_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0037   15.3   0.0       0.02   13.0   0.0    2.2  1  TIGR00004 TIGR00004: putative endoribonuclease L-PSP


Domain annotation for each model (and alignments):
>> TIGR00004  TIGR00004: putative endoribonuclease L-PSP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   4.8e-06      0.02      99     123 ..     233     257 ..     131     259 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 4.8e-06
   TIGR00004  99 ekpaRsavevaaLPkdvkvEieaia 123
                  + aRsa++ ++LP d +vE+e+i+
  MMETSP1061-20121228|4507_1 233 GYHARSAIGTSTLPLDITVEVECIV 257
                 478********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1741.00
//
Query:       MMETSP1061-20121228|4506_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-43  147.5   0.3    1.6e-43  146.9   0.2    1.3  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    2.4e-33  113.6   0.1    2.7e-33  113.4   0.1    1.0  1  TIGR01929 menB: naphthoate synthase
    6.1e-32  108.5   0.2      7e-32  108.3   0.2    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    4.1e-29   99.5   0.2    4.7e-29   99.3   0.1    1.0  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    1.2e-28   97.4   0.1    1.4e-28   97.2   0.1    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
      1e-24   84.7   0.1    1.2e-24   84.5   0.1    1.2  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    2.1e-22   77.4   0.1    2.6e-22   77.2   0.1    1.2  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    7.4e-13   46.1   0.3      9e-13   45.8   0.2    1.2  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
    1.8e-12   44.6   0.1    2.2e-12   44.3   0.1    1.1  1  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.2   3.5e-46   1.6e-43      20     254 ..       1     233 []       1     233 [] 0.92

  Alignments for each domain:
  == domain 1    score: 146.9 bits;  conditional E-value: 3.5e-46
   TIGR02280  20 lnsfteemhaelaealerverdd.vrallltGaG.rGfcaGqdlsernvtkgaapdlGetvekfynplvrrlaal.pkpvvvavnGvaaGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqalaahlakqptrglalikralqaaetnsldtqldlerdlqrelGrsadyaeGvaafldkrepefk 254
                 +n++++++ ++l +a   +++d+ +r+++ltG+  r f+aG d+se + +k +      +     +   + + +l   p+++av G   G G +la+ +div+ a+ akf q  ++lG+ip +GGt  l r +G+++a+ + l+g+ +d ++a + Gl+ +v+d+e+l +e  ++a+++a++ + +l ++k a++aa   sl++ l +er l   l  + d +eG+aafl+kr p+fk
  MMETSP1061-20121228|4506_1   1 MNALNDDLFEDLIHATRVLDKDQnIRCMVLTGSTpRCFAAGADISEMKDRKFEEVYRTDMF----SE-WQEVSKLgGTPIIAAVSGYCLGGGNELAMMCDIVVCARGAKFGQPEINLGIIPGAGGTQRLTRAIGKSKAMHMCLTGDLMDCQEAYASGLVAKVYDEEKLLEESIKMATKIASKGSASLRAVKEAVNAADELSLQEGLRFERRLFHALFATDDQTEGMAAFLEKRPPNFK 233
                 699*************99999999********754**********9988776544333222....22.2344555258**************************************************************************************************************************************************************97 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.1   5.9e-36   2.7e-33      25     256 ..       2     232 ..       1     233 [] 0.89

  Alignments for each domain:
  == domain 1    score: 113.4 bits;  conditional E-value: 5.9e-36
   TIGR01929  25 nafrpktvdellealddaredsdiGvviltGaGdkafcsGGdqkvrgksGykdesGesrlnvlevqrlirtlpkpvialvnGyaiGGGhvlhvvcdltiasenarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewareilaksplalrllkaalnadld..GqaGlqelaGeatllfylteeaqeGrdaflekrepdf 256
                 na+     ++l++a     +d++i  ++ltG+  + f +G d  +  ++  k e+        e q + +    p+ia v+Gy++GGG+ l ++cd+ + +  a+fgq + ++G   g  G+  l+r +G+ ka  + +++   d +ea++ Glv +v + ++l +e++++a++i +k   +lr +k a+na ++   q Gl  +       ++ t++  eG  aflekr+p+f
  MMETSP1061-20121228|4506_1   2 NALNDDLFEDLIHATRVLDKDQNIRCMVLTGSTPRCFAAGAD--ISEMKDRKFEEVYRTDMFSEWQEVSKLGGTPIIAAVSGYCLGGGNELAMMCDIVVCARGAKFGQPEINLGIIPGAGGTQRLTRAIGKSKAMHMCLTGDLMDCQEAYASGLVAKVYDEEKLLEESIKMATKIASKGSASLRAVKEAVNAADElsLQEGL-RFERRLFHALFATDDQTEGMAAFLEKRPPNF 232
                 7777778899999999999**********************9..55555556666555566679999999999**********************************************************************************************************************97652123443.4666666677899****************99 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.3   0.2   1.5e-34     7e-32      23     210 ..       1     186 [.       1     206 [. 0.86

  Alignments for each domain:
  == domain 1    score: 108.3 bits;  conditional E-value: 1.5e-34
   TIGR02440  23 lntlkaefadqvaeilkqlkekkelrglvlvsgkpdsfiagadismlaacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpksilldvavelakkgklkrka..lslq 210
                 +n+l+ ++ +++ +  + l +++++r +vl  + p  f agadis ++  k  +  ++      + +++l     +++aa+ g clggg ela+ c   vc+   k  +g pe++lg++pg+ggtqrl r +g ska++m ltg  +  ++a   glv +v  ++ ll+ ++++a k   k  a  ++++
  MMETSP1061-20121228|4506_1   1 MNALNDDLFEDLIHATRVLDKDQNIRCMVLTGSTPRCFAAGADISEMKDRKFEEVYRTDMFSEWQEVSKLGG--TPIIAAVSGYCLGGGNELAMMCDIVVCARGAK--FGQPEINLGIIPGAGGTQRLTRAIGKSKAMHMCLTGDLMDCQEAYASGLVAKVYDEEKLLEESIKMATKIASKGSAslRAVK 186
                 7899999999999999999**************************999988776666544444444555655..568*************************9876..8****************************************************************99876554433224444 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.1     1e-31   4.7e-29      23     254 ..       1     233 []       1     233 [] 0.89

  Alignments for each domain:
  == domain 1    score: 99.3 bits;  conditional E-value: 1e-31
   TIGR03210  23 lnafrgrtcdelikalkkagydreigvivlagagdkafctggdqst.hdgnydgrgviglpveelhsairdvakpviarvqgyaigggnvlvticdltiasekavlgqvgpkvgsvdpgygtallarvvgekkareiwylcrrysakealamglvnavvphdqldaevkkwcdeiveksptalaiakrsfnvdta..hqagiaglgmyalklyydteesregvkalqekrkpefr 254
                 +na+     ++li+a +  + d++i ++vl+g+  ++f++g d s  +d +++      + + e ++  +    p+ia v gy++gggn l+ +cd+ +++  a +gq   ++g +    gt  l+r +g+ ka  +        ++ea a glv  v   ++l  e  k + +i  k  ++l   k + n   +   q+g+  +    ++  + t++ +eg+ a+ ekr p+f+
  MMETSP1061-20121228|4506_1   1 MNALNDDLFEDLIHATRVLDKDQNIRCMVLTGSTPRCFAAGADISEmKDRKFEEVYRTDM-FSEWQEVSKLGGTPIIAAVSGYCLGGGNELAMMCDIVVCARGAKFGQPEINLGIIPGAGGTQRLTRAIGKSKAMHMCLTGDLMDCQEAYASGLVAKVYDEEKLLEESIKMATKIASKGSASLRAVKEAVNAADElsLQEGLR-FERRLFHALFATDDQTEGMAAFLEKRPPNFK 233
                 79999999***********************************98625666766554443.5677777777889****************************************9988889*********************************************************************9865411455554.34455667799******************96 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.1   3.1e-31   1.4e-28      36     197 ..       2     159 ..       1     208 [. 0.86

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 3.1e-31
   TIGR02441  36 ntlskelsaefkevldeletneavksavlisskpgsfvaGadidmlkacktaeev.tqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvd 197
                 n+l+ +l++++ +    l  +++++ +vl  s p +f aGadi+ +k  k  e   t +  e q+ ++kl     pi+aa+sG clGGG ela+ c+    +  + +++g pe+ lG++pGaGgtqrl + ++  +a+ + ltG  +  + a   Glv ++ d
  MMETSP1061-20121228|4506_1   2 NALNDDLFEDLIHATRVLDKDQNIRCMVLTGSTPRCFAAGADISEMKDRKFEEVYrTDMFSEWQE-VSKLG--GTPIIAAVSGYCLGGGNELAMMCDI--VVCARGAKFGQPEINLGIIPGAGGTQRLTRAIGKSKAMHMCLTGDLMDCQEAYASGLVAKVYD 159
                 99******************************************999988776541445555555.56664..67*********************85..555667789*************************************************99976 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.1   2.7e-27   1.2e-24      29     204 ..       2     174 ..       1     225 [. 0.85

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 2.7e-27
   TIGR02437  29 nkldratlasldkaldalkaqsdlkglllt.sdkdafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkaekleaaalqllkda 204
                 n l+   + +l +a  +l+++ ++++++lt s   +f  Gadi+e+ +   k ee+  + +    +  +kl     p +aav G++lGGG e+ + +d+ + ++ ak G pe+ lGi+pG GGt rl r iG  +a+ +  +G+ +  ++a   glv  v + ekl + ++++ ++ 
  MMETSP1061-20121228|4506_1   2 NALNDDLFEDLIHATRVLDKDQNIRCMVLTgSTPRCFAAGADISEMKDR--KFEEVYRTDMFSEWQEVSKLG--GTPIIAAVSGYCLGGGNELAMMCDIVVCARGAKFGQPEINLGIIPGAGGTQRLTRAIGKSKAMHMCLTGDLMDCQEAYASGLVAKVYDEEKLLEESIKMATKI 174
                 778888899999**************9998467799*********8764..233333333322233345555..4789****************************************************************************************99999887654 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.1   5.8e-25   2.6e-22      89     248 ..      72     232 ..       3     233 .] 0.77

  Alignments for each domain:
  == domain 1    score: 77.2 bits;  conditional E-value: 5.8e-25
   TIGR03189  89 pvpilvavrgqclggglevaaagnllfaapdaklgqpeiklgvfapaasc.llpervgkvaaedllysgrsidgaegariglvdavaedpeaa.alayfdehlaklsasslrfavraarlgvvervkakiaevealyleelmathdaveglnaflekrpaaw 248
                   pi+ av g clggg e+a+  +++ +a +ak+gqpei+lg++  a     l   +gk+ a  +  +g  +d++e++  glv  v ++ +       +  ++a + ++slr av+ a   + e   +     e+  ++ l+at d  eg+ aflekrp ++
  MMETSP1061-20121228|4506_1  72 GTPIIAAVSGYCLGGGNELAMMCDIVVCARGAKFGQPEINLGIIPGAGGTqRLTRAIGKSKAMHMCLTGDLMDCQEAYASGLVAKVYDEEKLLeESIKMATKIASKGSASLR-AVKEAVNAADELSLQEGLRFERRLFHALFATDDQTEGMAAFLEKRPPNF 232
                 579****************************************9888755268999***************************99988765431233467889999999**9.77777777777777777788999999*******************9876 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.2     2e-15     9e-13      50     211 ..       2     159 ..       1     201 [. 0.88

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 2e-15
   TIGR03200  50 nsyttdmvkaiilafrrassdrdvaavvftavgdkafctggntkeyaeyyagnpqeyrqymrlfndmvsailgcdkpvicrvngmrigggqeigmaadlsvaqdlakfgqagpkhgsaaiggatdflplmigceqamvsgtlcepfsahkakrlgiivdvvp 211
                 n+   d+   +i a r    d+++ ++v+t+   + f +g +  e  +      + yr  m  f +  +       p+i+ v g  +ggg+e+ m +d+ v+   akfgq     g  +  g t+ l   ig  +am  + + + +    a+  g++++v  
  MMETSP1061-20121228|4506_1   2 NALNDDLFEDLIHATRVLDKDQNIRCMVLTGSTPRCFAAGADISEMKDRKF--EEVYRTDM--FSEWQEVSKLGGTPIIAAVSGYCLGGGNELAMMCDIVVCARGAKFGQPEINLGIIPGAGGTQRLTRAIGKSKAMHMCLTGDLMDCQEAYASGLVAKVYD 159
                 5667789999********************************999887543..34577765..5555444444557*********************************************************************************99975 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.1   4.9e-15   2.2e-12      63     231 ..      21     179 ..       6     204 .. 0.84

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 4.9e-15
   TIGR03222  63 ehpevrvvvltsakdkvfcaGanikmlglsthahkvnfckftnetrngiedaseesglkflaavnGtaaGGGyelalacdeivlvddrssavslpevpllavlpGtGGltrvtdkrrvrrdladifctieeGvkGkrakewrlvdevvksskfdaavaeraaelaaksd 231
                 +  ++r++vlt + ++ f aGa+i  +   +    v    +  +     ++ s+  g   +aav G + GGG ela+ cd +v    r +    pe+  l+++pG+GG  r+t  r + + +a  +c + + +  + a    lv +v  ++k+ ++  + a+++a+k  
  MMETSP1061-20121228|4506_1  21 KDQNIRCMVLTGSTPRCFAAGADISEMKDRKFE-EV----YRTDMFSEWQEVSKLGGTPIIAAVSGYCLGGGNELAMMCDIVV--CARGAKFGQPEIN-LGIIPGAGGTQRLT--RAIGKSKAMHMCLTGDLMDCQEAYASGLVAKVYDEEKLLEESIKMATKIASKGS 179
                 56789*******************977655433.23....33344456788999**************************665..56888999****8.69**********98..899**********************************99998899999988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1025.12
//
Query:       MMETSP1061-20121228|4505_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 3056.06
//
Query:       MMETSP1061-20121228|4509_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   15.6   0.0     0.0042   14.5   0.0    1.5  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
  ------ inclusion threshold ------
      0.026   11.8   0.0      0.046   11.0   0.0    1.3  1  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.1e-06    0.0042      74     116 ..     224     266 ..     193     272 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.1e-06
   TIGR01250  74 eklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalk 116
                  k  ++ +++dE+e + +  +   fy+ g+S Gg+La  +a +
  MMETSP1061-20121228|4509_1 224 GKEQRYKQIMDEVESLIKDEEGYSFYVTGHSLGGALANVFAFQ 266
                 445678899****************************999876 PP

>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   2.2e-05     0.046      61     113 ..     211     264 ..     204     269 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.2e-05
   TIGR01840  61 wdwfetehrargtgeveslkqlidavka.nysIDpnrvyvtGLSaGggetaVll 113
                 +d+ +++   +++g+++  kq++d+v+    + +    yvtG S Gg+  +V +
  MMETSP1061-20121228|4509_1 211 YDYLNNNTDRETKGKEQRYKQIMDEVESlIKDEEGYSFYVTGHSLGGALANVFA 264
                 899999998999***************9777788999**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 2155.82
//
Query:       MMETSP1061-20121228|4508_1  [L=1002]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1002 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.42
# Mc/sec: 3148.88
//
Query:       MMETSP1061-20121228|4510_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1781.85
//
Query:       MMETSP1061-20121228|4511_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    6.8   8.3       0.28    8.6   3.3    1.7  2  TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family


Domain annotation for each model (and alignments):
>> TIGR03363  VI_chp_8: type VI secretion-associated protein, ImpA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   3.3   6.8e-05      0.28     153     284 ..      34     165 ..      20     178 .. 0.69
   2 ?   -1.0   0.0     0.057   2.3e+02     236     284 ..     184     231 ..     176     245 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 6.8e-05
   TIGR03363 153 ldyeraqvenlerkdpeeakaaieegklseeeleealldtskdflqakaealeaalealqalealvderlGsaapslsplrkaLqallrlverlakdkgle.aeeapaaaadaaedeetgeaataeasaepas 284
                 +++e+ + +n+++k+++e ++  ++ + ++++ +++    ++ +++++ +     ++a q++++++++ + s+++sls  +++ +++  +++r  k ++   +++a    a+  +++ t++ +++++s + ++
  MMETSP1061-20121228|4511_1  34 RKMENRN-KNINNKNNNESDNNNNNINNNNNNNNNSSHSHNRGHVENENDYDCVYQHASQRIHRSLSASVSSSSLSLSSSSRSPDRAGASTNRPPKRHPHPtLQNARYSRAQSPPTQRTEPSSAPSSSSSSKK 165
                 3444444.4555555555555555555555555555555555555555555556688899**************************************98866666666666667777777777776666544 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.057
   TIGR03363 236 Lqallrlverlakdkgleaeeapaaaadaaedeetgeaataeasaepas 284
                 L + +r ++r++++k + +++  +    + e+e+++e + ++++ + +s
  MMETSP1061-20121228|4511_1 184 LARRQRKLRRMMAAKRM-QQQRCNSFGSEDENENENEYSSPQMRTTVPS 231
                 56667777777777654.4555555555556666666666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1647.22
//
Query:       MMETSP1061-20121228|4514_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 833.62
//
Query:       MMETSP1061-20121228|4512_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1115.91
//
Query:       MMETSP1061-20121228|4515_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 2222.53
//
Query:       MMETSP1061-20121228|4513_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 1163.15
//
Query:       MMETSP1061-20121228|4516_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 477.89
//
Query:       MMETSP1061-20121228|4518_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 1173.24
//
Query:       MMETSP1061-20121228|4520_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1656.25
//
Query:       MMETSP1061-20121228|4517_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 2129.04
//
Query:       MMETSP1061-20121228|4523_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 764.44
//
Query:       MMETSP1061-20121228|4522_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 2610.08
//
Query:       MMETSP1061-20121228|4519_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1627.87
//
Query:       MMETSP1061-20121228|4524_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 578.72
//
Query:       MMETSP1061-20121228|4521_1  [L=839]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 2914.18
//
Query:       MMETSP1061-20121228|4525_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.9e-114  379.3   0.0   4.9e-114  379.0   0.0    1.0  1  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
   5.4e-109  362.3   0.1   1.6e-108  360.8   0.1    1.6  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases
    3.9e-86  287.3   0.5    5.3e-85  283.6   0.4    1.9  1  TIGR03246 arg_catab_astC: succinylornithine transaminase family
    2.2e-81  271.5   0.1    2.8e-81  271.2   0.0    1.0  1  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
      5e-80  267.0   0.0    6.4e-80  266.7   0.0    1.1  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
    3.7e-79  264.1   0.0    4.5e-79  263.8   0.0    1.0  1  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
    7.1e-66  220.3   0.0    9.3e-66  219.9   0.0    1.1  1  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
    3.9e-61  205.1   0.0      6e-61  204.5   0.0    1.2  1  TIGR03372 putres_am_tran: putrescine aminotransferase
    1.1e-48  163.8   0.0    1.7e-48  163.2   0.0    1.2  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
    1.5e-45  153.3   0.0    3.7e-45  152.0   0.0    1.6  1  TIGR03251 LAT_fam: L-lysine 6-transaminase
    3.9e-32  109.4   0.0      6e-26   89.0   0.0    2.2  2  TIGR00699 GABAtrns_euk: 4-aminobutyrate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.0   0.0  1.3e-116  4.9e-114      20     420 .]      61     460 ..      53     460 .. 0.97

  Alignments for each domain:
  == domain 1    score: 379.0 bits;  conditional E-value: 1.3e-116
   TIGR00700  20 akaegaelkdvdGnrlidlaagiavlnvGhshPkvveavkrqveelthtafqvvpyesyvelaeklnaiaPgsgekkavllnsGaeavenavkiarkytgrpgvvafsrgfhGrtnltmaltakvkPykiGfGPfapevyraPlpydyrdialdkqeslddelaaiealfvadveaeqvaavvlePvqGeGGfivpakelvaavaslckehgivliadevqtGfartGklfaieheddkPdlitvaksladGlPlsgvvGraeildapapGglGGtyaG.nPlavaaalavldiieeeglieraeqigklvkdklielkeevpaigdvrglGamiavelvdpdttePdaalaekiaaaalaaGlllltaGifGniirlltPltisdelldeglkileaalad 420
                 +++eg  l d dG ++ d+++gi+v+n+Gh+hPk+ ea++ q+ +l     +vv+ + ++el+ekln+++P        + nsGaea e avk+ar+ +g++ +v f+++fhGrt   ma+t+    y+  + P+++ ++ +P+p +y  +   ++ ++d  ++ +e++ + + ++++ aa+ +ePv GeGG++  ++e++++++++c+eh+i+l+ de+q+Gf rtGklfaieh +++Pd++ +ak+l +G+P+s+v    e++   + G  GGty+G n +   aala++d+++ee + e a + g+ + dkl  ++e  p+igdvrglG m+  e++dp t++P   +a ++ +a  ++  l+l++G +Gn+ir+++Pl+++++++d++++i e+a++d
  MMETSP1061-20121228|4525_1  61 VRGEGIYLWDADGTKYTDFTSGIGVTNLGHTHPKITEAIRDQATQLHFGQMNVVMLPQFIELSEKLNEVTPDGI-DSFFFANSGAEATEAAVKLARHASGKKNIVVFKGSFHGRTAQCMAMTTSKYIYRENYAPLPGGIHVTPFPNSYFYGWE-RDVTIDFCMKELERVIMGQTSPDETAAIFVEPVLGEGGYVPVPNEFMTKLRDFCNEHDILLVVDEIQSGFGRTGKLFAIEHSGVRPDILIMAKGLGNGMPVSAVGAPHELMTRWKKGTHGGTYGGgNAMVARAALATIDVMQEEKIPENAAKTGEYLMDKLRGVQERNPVIGDVRGLGLMVGTEFTDPSTGKPAGDVAMAVRSACIEKNFLVLSCGTYGNVIRWIPPLIVTEAQIDDAVDIFEQAIKD 460
                 799********************************************************************755.567888*******************************************************************99887.8999999********************************************************************************************************************8626777779*************************************************************************************************************999876 PP

>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.8   0.1  4.2e-111  1.6e-108      11     380 ..      58     458 ..      51     459 .. 0.89

  Alignments for each domain:
  == domain 1    score: 360.8 bits;  conditional E-value: 4.2e-111
   TIGR00707  11 laivrgkgakvyDveGkeYlDlvaGiavnalGHahpklvealkeqleklvh.vsnlyateeqlelaeklvels..aadrvffcnsGaeanEaAlklarkaarkkgkekkkivafknsFHGRtlgalsatg.kpkykkdFeplvpgvkyveynd..iealkeaidde..................taavivEpiqGEgGvvpadkeflkalrelceekdvllivDEvqtGlGRtGklfayehygvePDiltlakalggGvPigavlakeevaealtvGdHgstfG.Gnplacaaalavleviekeellekvkekgeilkkkleellkkki.ikevrGkGLllGieleaesl........keivkkleekGllvntag..ekvlrlvppLiieeeeieeavealeevi 380
                 ++ vrg+g++++D +G +Y D+++Gi+v++lGH+hpk++ea+++q+ +l++   n+ + ++ +el+ekl e++  + d +ff+nsGaea EaA+klar+a +     kk+iv fk sFHGRt   +++t+ k  y+++++pl++g++  ++ +      ++ ++ +                  taa++vEp+ GEgG vp+ +ef+++lr++c+e+d+ll+vDE+q G+GRtGklfa eh gv+PDil +ak+lg+G+P++av a +e+    + G+Hg t+G Gn + ++aala+++v+++e++ e++++ ge+l +kl+ +++++  i +vrG GL++G e++++s+          ++ +  ek +lv+  g   +v+r +ppLi++e++i++av+++e++i
  MMETSP1061-20121228|4525_1  58 VQPVRGEGIYLWDADGTKYTDFTSGIGVTNLGHTHPKITEAIRDQATQLHFgQMNVVMLPQFIELSEKLNEVTpdGIDSFFFANSGAEATEAAVKLARHASG-----KKNIVVFKGSFHGRTAQCMAMTTsKYIYRENYAPLPGGIHVTPFPNsyFYGWERDVTIDfcmkelervimgqtspdeTAAIFVEPVLGEGGYVPVPNEFMTKLRDFCNEHDILLVVDEIQSGFGRTGKLFAIEHSGVRPDILIMAKGLGNGMPVSAVGAPHELMTRWKKGTHGGTYGgGNAMVARAALATIDVMQEEKIPENAAKTGEYLMDKLRGVQERNPvIGDVRGLGLMVGTEFTDPSTgkpagdvaMAVRSACIEKNFLVLSCGtyGNVIRWIPPLIVTEAQIDDAVDIFEQAI 458
                 7889*********************************************87356999999*********999744678**********************99.....9*******************97626689************9999653333333333333344445666666699999***************************************************************************************************736**************************************99988899**************9974445533333455666789999998873369************************98 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.6   0.4   1.4e-87   5.3e-85      18     396 ..      57     461 ..      44     462 .. 0.87

  Alignments for each domain:
  == domain 1    score: 283.6 bits;  conditional E-value: 1.4e-87
   TIGR03246  18 kfipvrgeGsrvwdqegkeyidfaGGiavnalGhahpelvealkeqaeklwh.lgngytnepvlrlakklvdatf..adkvffcnsGaeaneaalklarkvaldkygaekseivafknsfhGrtlftvsvG.Gqakysedfaplpegikhaaynd...............lealkalis.....dktcavivepiqGegGvvpadkaflkglrelcdrhnallifdevqtGvGrtGelyaymeyGvtpdiltsakalGgGfpiGalltteelakvlkvGthGttyG.GnplacavaekvldlvntaelleGvkqrhelfvdelekinarykvfseirGkGlliGavlteeyaGk.....akdlvnaaaeeGvlvliaGp..dvvrfapslvieeeeikeGlarlekavekl 396
                  + pvrgeG  +wd +g +y df+ Gi v+ lGh+hp+++ea+ +qa++l     n+      ++l++kl + t    d  ff+nsGaea eaa+klar      +++ k++iv fk sfhGrt   +++   +  y+e++aplp+gi+ +++ +               ++ l+++i      d+t a+ vep+ GegG vp  ++f+ +lr+ c++h+ ll+ de+q+G GrtG+l+a  + Gv pdil  ak+lG+G+p+ a+ + +el +  k GthG tyG Gn + +  a + +d++++ ++ e   +  e+++d+l  +++r  v  ++rG Gl++G+++t+  +Gk     a  + +a  e+  lvl  G+  +v+r+ p l+++e++i++ ++ +e+a++ +
  MMETSP1061-20121228|4525_1  57 MVQPVRGEGIYLWDADGTKYTDFTSGIGVTNLGHTHPKITEAIRDQATQLHFgQMNVVMLPQFIELSEKLNEVTPdgIDSFFFANSGAEATEAAVKLAR------HASGKKNIVVFKGSFHGRTAQCMAMTtSKYIYRENYAPLPGGIHVTPFPNsyfygwerdvtidfcMKELERVIMgqtspDETAAIFVEPVLGEGGYVPVPNEFMTKLRDFCNEHDILLVVDEIQSGFGRTGKLFAIEHSGVRPDILIMAKGLGNGMPVSAVGAPHELMTRWKKGTHGGTYGgGNAMVARAALATIDVMQEEKIPENAAKTGEYLMDKLRGVQERNPVIGDVRGLGLMVGTEFTDPSTGKpagdvAMAVRSACIEKNFLVLSCGTygNVIRWIPPLIVTEAQIDDAVDIFEQAIKDV 461
                 4569********************************************995425688899999*********9963379*******************8......566789*************9988765156789************999854333333333333333345566664333347899*************************************************************************************************736889999999*****************************************************9999533334455667789999****995459**************************986 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.2   0.0   7.5e-84   2.8e-81      27     437 ..      62     462 ..      55     467 .. 0.89

  Alignments for each domain:
  == domain 1    score: 271.2 bits;  conditional E-value: 7.5e-84
   TIGR00709  27 kakGckvtdveGkeyldflaGaGtlalGhndealkqklkdvldsglvlhtldlttklkdafi...eallaillkpkeeyilqftGpsGadaveaalklakkytGrsnvisfsgGfhGmtiGalaltGnlsaknavenlls.gvqflpydheyreplglggeagadavieyienfledvesGvdkpaavileaiqGeGGvvaasveflrkirevtrkrdillildevqaGvarsGklfafehaGiepdvvvlskavGGglplavlaikke.fdafqpaehtGtfrG.nqlalatGlealeilkdenlaknaqergerltsalddlikeypeiknvrGrGlmlGieivderkskdaigaypadselaaaiqkacfenklllekgGregevvrllcpvtiddeeleevlsrlkqaveeal 437
                 + +G++++d +G++y df +G G  +lGh +++++ +++d       lh   +   +  +fi   e+l ++ +++ +     f   sGa+a+eaa+kla++ +G+ n++ f g fhG t  ++a+t  +       ++l+ g+++ p+++ y    g   +   d  ++ +e  +    s  d  aa+ +e + GeGG v  + ef+ k+r+ ++++dill++de+q+G++r+Gklfa eh+G++pd+++++k +G g+p++ ++  +e   +++ + h Gt+ G n +   + l++++++++e++ +na + ge+l + l+ +  + p i++vrG Glm+G e +d       +g  pa  ++a a+++ac e+++l+  +G  g+v+r ++p+++++ ++++ + +++qa+++++
  MMETSP1061-20121228|4525_1  62 RGEGIYLWDADGTKYTDFTSGIGVTNLGHTHPKITEAIRDQA---TQLHFGQMNVVMLPQFIelsEKLNEVTPDGID---SFFFANSGAEATEAAVKLARHASGKKNIVVFKGSFHGRTAQCMAMTTSKYIYRENYAPLPgGIHVTPFPNSYFY--GWERDVTIDFCMKELERVIMGQTS-PDETAAIFVEPVLGEGGYVPVPNEFMTKLRDFCNEHDILLVVDEIQSGFGRTGKLFAIEHSGVRPDILIMAKGLGNGMPVSAVGAPHElMTRWKKGTHGGTYGGgNAMVARAALATIDVMQEEKIPENAAKTGEYLMDKLRGVQERNPVIGDVRGLGLMVGTEFTDPS-----TGK-PA-GDVAMAVRSACIEKNFLVLSCGTYGNVIRWIPPLIVTEAQIDDAVDIFEQAIKDVT 462
                 5689**********************************9865...55777777776666666111566666665544...458889*****************************************9998777777887368999******87..999999999999999999976655.5889***************************************************************************9777766652689**********8626666778899************************************************99988.....443.43.568999************************************************98 PP

>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.7   0.0   1.7e-82   6.4e-80      24     402 .]      61     459 ..      49     459 .. 0.88

  Alignments for each domain:
  == domain 1    score: 266.7 bits;  conditional E-value: 1.7e-82
   TIGR01885  24 skaeGakvwdvegkryldflsaysavnqGhchpkivkalveqaqkltlssra.fyndvfgefaeyvtklf..GydkvlpmntGaeavetaiklarkWgykkkkipedkalilsaegnfhGrtlavislstdpes.renfGpyvpnv................kkieynnlealeealee..agekvaaflvePiqGeaGvvvpddgylkkvrelckkynvlliadeiqtGiartGkllaveheevkPdivllGkalsgGvyPvsavladkevmltikpgehGstyg.GnPlasavavaalevlkeeklaeraeklGeelreelkkl..kkeivkevrGkGllnaivideskangreawdlclklkekG......llakptheeiirlaPPlviteeelkeaveiikkvlk 402
                  ++eG ++wd++g +y df s+    n Gh+hpki +a+ +qa +l +     +   +f e++e++ ++   G d ++  n+Gaea+e+a+klar+ +         k  i++ +g+fhGrt ++++++t +   ren+ p+  ++                 +i++  +++le+++    + ++ aa++veP+ Ge G v   ++++ k r++c+++++ll++deiq G +rtGkl+a+eh++v+Pdi+++ k l+ G+ Pvsav a +e+m   k g+hG tyg Gn + ++ a+a+++v++eek+ e+a+k Ge l ++l+ +  +++++ +vrG Gl+ +  + +    g+ a d+ + +++        +l+  t +++ir  PPl++te ++++av+i+++++k
  MMETSP1061-20121228|4525_1  61 VRGEGIYLWDADGTKYTDFTSGIGVTNLGHTHPKITEAIRDQATQLHFGQMNvVMLPQFIELSEKLNEVTpdGIDSFFFANSGAEATEAAVKLARHAS--------GKKNIVVFKGSFHGRTAQCMAMTTSKYIyRENYAPLPGGIhvtpfpnsyfygwerdVTIDFC-MKELERVIMGqtSPDETAAIFVEPVLGEGGYVPVPNEFMTKLRDFCNEHDILLVVDEIQSGFGRTGKLFAIEHSGVRPDILIMAKGLGNGM-PVSAVGAPHELMTRWKKGTHGGTYGgGNAMVARAALATIDVMQEEKIPENAAKTGEYLMDKLRGVqeRNPVIGDVRGLGLMVGTEFTDPS-TGKPAGDVAMAVRSACieknflVLSCGTYGNVIRWIPPLIVTEAQIDDAVDIFEQAIK 459
                 69********************************************99876515678899999999998666***********************854........44468899***************998752689***99999999***********77677775.5788887754125689**************999999***************************************************9996.************************73699**********************************9954569**************998877.5777777777665433111122567789**************************9985 PP

>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.8   0.0   1.2e-81   4.5e-79      13     418 ..      56     458 ..      48     459 .. 0.93

  Alignments for each domain:
  == domain 1    score: 263.8 bits;  conditional E-value: 1.2e-81
   TIGR00508  13 pplavekaegvyltdedgkeliDgisSwwvavhGhnhpelneaikeqleklehvifaglthepaieLaekLveilpeglekvffsdsGsvavEvalKmalqywqnkgekekkkflalengYHGdTlgamsvgd.velfhelfeellfeqvkvpapevalek.keeekeeevleelekll..eehaeeiaalivEPlvqgagGmrvyspeyLkklrelcdeydvlliaDEiatGfgrtGklFacehagvtPDilclsKaltgGylplaatltteeiyeaflsdeeekaflHghtyt.gnplacavAlaslelleeeeilekvkeieaqlkeeleelke.lpkvkdvRvlGaigavelkeekel..eerigekiqkkalekgvllR...Plgnviylmppyiiteeeleklveaikeai 418
                 ++++ +++eg+yl+d+dg+++ D +s + v+  Gh hp+++eai++q+++l+   +  +   + ieL+ekL e++p+g++ +ff++sG+ a E a+K+a +       + kk+++++++++HG T ++m+++  + +++e +++l    + +p+p++++   +++ + + +++ele+++  +++ +e+aa+ vEP v g gG   +++e+++klr++c+e+d+ll++DEi  GfgrtGklFa+eh gv PDil ++K+l  G +p++a+ + +e++    +++      Hg ty  gn++ +++Ala++++++ee+i e+++++ ++l ++l+ ++e +p + dvR lG++++ e++++++   + +++ +++++++ek+ l+      gnvi ++pp+i+te++++++v+++++ai
  MMETSP1061-20121228|4525_1  56 TMVQPVRGEGIYLWDADGTKYTDFTSGIGVTNLGHTHPKITEAIRDQATQLHFGQMNVVMLPQFIELSEKLNEVTPDGIDSFFFANSGAEATEAAVKLARHA------SGKKNIVVFKGSFHGRTAQCMAMTTsKYIYRENYAPLPGGIHVTPFPNSYFYGwERDVTIDFCMKELERVImgQTSPDETAAIFVEP-VLGEGGYVPVPNEFMTKLRDFCNEHDILLVVDEIQSGFGRTGKLFAIEHSGVRPDILIMAKGLGNG-MPVSAVGAPHELMTRWKKGT------HGGTYGgGNAMVARAALATIDVMQEEKIPENAAKTGEYLMDKLRGVQErNPVIGDVRGLGLMVGTEFTDPSTGkpAGDVAMAVRSACIEKNFLVLscgTYGNVIRWIPPLIVTEAQIDDAVDIFEQAI 458
                 5566689*******************************************************************************************9765......45679*******************98999*******************9966658899999********983356679*********.78*************************************************************999.7***********98888876......*****736*************************************88768999****************966656899************99886122578***********************9998 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.9   0.0   2.5e-68   9.3e-66      23     411 ..      62     459 ..      56     460 .. 0.86

  Alignments for each domain:
  == domain 1    score: 219.9 bits;  conditional E-value: 2.5e-68
   TIGR02407  23 kakgaklldedgkeyidflagaGalnyGhnneklkealldylaedgivhsldmateakkefletfeev.ilkPreldykvqftgPtGtnavesalklarkvtgrenvvaftnafhGmslgslavtgnkskreeagvsls...nvvrlPydgyldeevd.slayleklledsssGvdlP...aaviletvqgeGGlnvaskeWlrsleklcrehdillivddiqaGcGrtGtffsfeeagikPdivclsksisGiGlPlalvllkpe.ldvwkPgehnGtfrGnnlafvaataalekyWkddelekavkkksekvkerleeivekypelkkearGrGllqGlevkk.......edlakkvakkafekgliietsGaedevlkllpaltideeelekGleileqale 411
                 +++g +l+d+dg +y df +g G+ n Gh ++k+ ea+ d  ++    h   m      +f+e  e+   + P ++d    f +  G++a e+a+klar++ g++n+v f  +fhG ++ ++a+t++k+  +e++ +l    +v+ +P   +++ e d ++++  k le    G   P   aa+ +e v geGG     +e++ +l++ c+ehdill+vd+iq+G GrtG++f+ e++g++Pdi++++k ++  G+P++ v    e +  wk g h Gt+ G n  +  a+ a     +++++ ++  k++e + ++l+ + e++p ++ ++rG Gl+ G e+++        d+a  v +++ ek++++ ++G+  +v++ +p+l+++e ++++ ++i+eqa++
  MMETSP1061-20121228|4525_1  62 RGEGIYLWDADGTKYTDFTSGIGVTNLGHTHPKITEAIRDQATQ---LHFGQMNVVMLPQFIELSEKLnEVTPDGIDS--FFFANSGAEATEAAVKLARHASGKKNIVVFKGSFHGRTAQCMAMTTSKYIYRENYAPLPggiHVTPFPNSYFYGWERDvTIDFCMKELERVIMGQTSPdetAAIFVEPVLGEGGYVPVPNEFMTKLRDFCNEHDILLVVDEIQSGFGRTGKLFAIEHSGVRPDILIMAKGLGN-GMPVSAVGAPHElMTRWKKGTHGGTYGGGNAMVARAALATIDVMQEEKIPENAAKTGEYLMDKLRGVQERNP-VIGDVRGLGLMVGTEFTDpstgkpaGDVAMAVRSACIEKNFLVLSCGTYGNVIRWIPPLIVTEAQIDDAVDIFEQAIK 459
                 56899******************************999885544...4555788888899999877642478999985..678899*****************************************9988888887752124555555555555555356676666666666554443339********************************************************************965.*****99887773579**********9998766666666666899*******************99887755.7889***********98744444446789999********************************************97 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.5   0.0   1.6e-63     6e-61      69     434 ..      68     450 ..      58     458 .. 0.84

  Alignments for each domain:
  == domain 1    score: 204.5 bits;  conditional E-value: 1.6e-63
   TIGR03372  69 lvdtqgqeyldclggygifnvghrnpvvvaavesqlakqplhsqe.lldplrallaktlaaltpgklkysffsnsgtesveaalklakayqsprgkytfiaasgafhgkslgals.ataksafrkpfmpllpgfrhvafgd...........ieamlkalqec...kktgddvaavilepiqgeggvilppenyltavrklcdevgallildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatvateevfsvlfenpflhtttf.ggnplacaaalatvnvlleknlpeqaeikgellldglrqlaaeypdlvieargkgllqaiefvdneig.......yafakelfrrrvlvagtlnnaksvrieppltltieqcelv 434
                 l d++g +y d   g g+ n+gh  p++  a+++q ++  +   + ++ p    l+  l  +tp  +   ff+nsg+e+ eaa+kla+      gk  ++   g+fhg++  +++ +t+k  +r+ + pl  g++  +f +           i+  +k+l+++   + + d+ aa+ +ep+ gegg +  p++++t +r +c+e   ll++de+q+g+grtgk+fa eh +v+pdil +ak lg g mp+ a  a  e+++   +    h  t+ ggn + + aalat++v+ e+++pe+a++ ge+l+d lr +    p ++ + rg gl+   ef+d   g        a  +  ++++ lv       + +r  ppl +t  q +  
  MMETSP1061-20121228|4525_1  68 LWDADGTKYTDFTSGIGVTNLGHTHPKITEAIRDQATQLHFGQMNvVMLPQFIELSEKLNEVTPDGIDSFFFANSGAEATEAAVKLARH---ASGKKNIVVFKGSFHGRTAQCMAmTTSKYIYRENYAPLPGGIHVTPFPNsyfygwerdvtIDFCMKELERVimgQTSPDETAAIFVEPVLGEGGYVPVPNEFMTKLRDFCNEHDILLVVDEIQSGFGRTGKLFAIEHSGVRPDILIMAKGLGNG-MPVSAVGAPHELMTRWKK-G-THGGTYgGGNAMVARAALATIDVMQEEKIPENAAKTGEYLMDKLRGVQERNP-VIGDVRGLGLMVGTEFTDPSTGkpagdvaMAVRSACIEKNFLVLSCGTYGNVIRWIPPLIVTEAQIDDA 450
                 7799*******************************877655444414567778899*******************************85...579999999********999887256899********999999889976333333333335555555554322277889************************************************************************999.9*****999999876544.4.4666662679999********************************9876655.899**************976552222211567788999**999888888889**********9998765 PP

>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   0.0   4.4e-51   1.7e-48      35     360 ..      61     400 ..      49     422 .. 0.86

  Alignments for each domain:
  == domain 1    score: 163.2 bits;  conditional E-value: 4.4e-51
   TIGR00713  35 ekakgallldvdgneyiDyvlsyGplilGhahekvveavkealer...GlsyGapteaeielakeiiervksv.ekvRlvnsGteatmsavRlaRgftgrdkiikfeGcyhGhaDalLvkagsgaatlg.............lpsslgvpeeaakltlvlpyndlealeevlee.lgeeiagvivepvagnmgvvlpkkeflealrelteengallilDevvtGF.RvalegaqelygvepDlvvlGkilggGlPvgalggrreimerlaPeGkvyqaGtls.gnplavaaGlatlkaleeeevykeleelaeklaegleevleekgievevvrvgsmlslfftee 360
                  +++g +l+d+dg +y D+  + G   lGh+h+k++ea+++++ +   G    +  ++ iel +++ e+ +   +   + nsG+eat +av+laR  +g+++i+ f+G++hG + + ++ ++s     +              p+s        +  +++ +   e  + ++ +   +e a++ vepv g  g v+  +ef+++lr+ ++e+++ll++De+ +GF R  +  a e  gv+pD++++ k lg G+Pv+a+g+ +e+m r   +G+    Gt   gn +   a lat+  ++ee++ ++ +++ e l+++l+ v e++ +  +v  +g m++  ft+ 
  MMETSP1061-20121228|4525_1  61 VRGEGIYLWDADGTKYTDFTSGIGVTNLGHTHPKITEAIRDQATQlhfGQMNVVMLPQFIELSEKLNEVTPDGiDSFFFANSGAEATEAAVKLARHASGKKNIVVFKGSFHGRTAQCMAMTTSKYIYREnyaplpggihvtpFPNSYFY---GWERDVTIDFCMKELERVIMGQtSPDETAAIFVEPVLGEGGYVPVPNEFMTKLRDFCNEHDILLVVDEIQSGFgRTGKLFAIEHSGVRPDILIMAKGLGNGMPVSAVGAPHELMTRWK-KGT--HGGTYGgGNAMVARAALATIDVMQEEKIPENAAKTGEYLMDKLRGVQERNPVIGDVRGLGLMVGTEFTDP 400
                 589************************************99876522266666778999*********9998779***************************************99999888877666567776666443333333222...234567777776666666775515789**********************************************999999************************************986.454..678886268888899***********************************99999999999999888865 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.0   9.8e-48   3.7e-45      25     433 .]      62     459 ..      51     459 .. 0.80

  Alignments for each domain:
  == domain 1    score: 152.0 bits;  conditional E-value: 9.8e-48
   TIGR03251  25 ksrGsvlvdardGrryldlfsffassalGmnhPaladdaefrerlaavavnkpsnsdvytvemarfvdtfarvlvdpalPhlffieGGalavenalktafdwksrkneargieaelGtkvlhlrqafhGrsGytlsltntdPrktarfPkfdwPridaPkltfpldaeeldavkaleeealaqakaafaeeeddiaaliiePiqgeGGdnhlrpeflralrklcdehdallvldevqtGvGltGkawayqqlgvkPdvvafGkktqvcGilagrrvdevadnvfk.vssrlnstfGGnlvdmvrat.rileiieeerlvdrareqGehllarleelaaefpklvsnprGrGllca..fdlpstelr.d....elvkalyrekvlvlgaGe..kairfrpaltvseeeidealdairrvlk 433
                 + +G +l da dG +y d+ s +  + lG+ hP++   +++r++ +++   +     v+  ++ ++ + ++ v+ ++ +   ff + Ga a e a+k a     r+ +  g+     ++++ ++++fhGr+   +++t ++    + +  +     ++P  +    + e+d  +    + l+++    ++++d+ aa+ +eP+ geGG   +  ef+ +lr +c+ehd+llv+de+q+G G tGk++a ++ gv+Pd++ + k       +    v   ++ + + +++    t+GG+ + + ra    +++++ee++ ++a+++Ge+l+ +l+ + ++ p ++ ++rG Gl++   f+ pst +       ++ +a  +++ lvl++G+  + ir+ p+l+v+e++id+a+d+ ++++k
  MMETSP1061-20121228|4525_1  62 RGEGIYLWDA-DGTKYTDFTSGIGVTNLGHTHPKI--TEAIRDQATQLHFGQM--NVVMLPQFIELSEKLNEVT-PDGIDSFFFANSGAEATEAAVKLA-----RHAS--GK-----KNIVVFKGSFHGRTAQCMAMTTSKYIYRENYAPLPGGIHVTPFPNSYFYGWERDVTIDFCMKELERVIM-GQTSPDETAAIFVEPVLGEGGYVPVPNEFMTKLRDFCNEHDILLVVDEIQSGFGRTGKLFAIEHSGVRPDILIMAKGLGN--GMPVSAVGAPHELMTRwKKGTHGGTYGGGNAMVARAAlATIDVMQEEKIPENAAKTGEYLMDKLRGVQERNP-VIGDVRGLGLMVGteFTDPSTGKPaGdvamAVRSACIEKNFLVLSCGTygNVIRWIPPLIVTEAQIDDAVDIFEQAIK 459
                 5679999997.8***********************..6789999888877654..4578888888888888875.778999****************98.....4432..22.....45899******************9999888888887777788777677778888555555555544432.257899******************************************************************99986433..233333433333333314566789**999888888762679*******************************.***********76226667664431211113444556999*******83356*********************99985 PP

>> TIGR00699  GABAtrns_euk: 4-aminobutyrate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   4.5e-07   0.00017      47     142 ..      63     154 ..      54     157 .. 0.79
   2 !   89.0   0.0   1.6e-28     6e-26     175     411 ..     160     398 ..     154     458 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 4.5e-07
   TIGR00699  47 slGnylvdvdGnvlldlyaqiasipiGynnPallkvakspevatalinrPalGnfpskdlakilkegilkvaPkgldsvysalaGsdanelafkaa 142
                   G yl d dG ++ d  + i    +G+ +P++  +++++ +      +  +  +p  ++ +++++ +  v P g+ds ++a +G++a+e a k+a
  MMETSP1061-20121228|4525_1  63 GEGIYLWDADGTKYTDFTSGIGVTNLGHTHPKITEAIRDQATQLH-FGQMNVVMLP--QFIELSEK-LNEVTPDGIDSFFFANSGAEATEAAVKLA 154
                 5799****************************9999876544333.3333444444..34444444.7789*********************9986 PP

  == domain 2    score: 89.0 bits;  conditional E-value: 1.6e-28
   TIGR00699 175 elavlsfkaafhGrlfgslsttrskpihkldiPafdw..PqaefP.slkyPleehveenakeeqrcleeveelikkyrkp..vaaiivePiqseGGdnhasddffrklrditkkhnvvfivdevqtGvGatGklwahehwnleePadlvtfskkl......qtaGyffhdealrPnkpyrqfntwlGdPsr.alllreiieeikdkdllenvaavGdylyagleelakkyPeklqnlrgkGrGtfiawd 411
                 +  ++ fk +fhGr+  +++ t+sk i++ +   ++     ++fP s+ y  e  v+      + c++e e++i     p   aai veP+  eGG     ++f+ klrd  + h+++ +vde+q+G G tGkl+a eh ++   +d++ ++k l       + G   h+   r  k   +  t+ G  +  a  + + i+ ++++++ en+a++G+yl+ +l +++++ P  + ++rg G      + 
  MMETSP1061-20121228|4525_1 160 KKNIVVFKGSFHGRTAQCMAMTTSKYIYRENYAPLPGgiHVTPFPnSYFYGWERDVTI-----DFCMKELERVIMGQTSPdeTAAIFVEPVLGEGGYVPVPNEFMTKLRDFCNEHDILLVVDEIQSGFGRTGKLFAIEHSGVR--PDILIMAKGLgngmpvSAVG-APHELMTRW-KKGTHGGTYGGGNAMvARAALATIDVMQEEKIPENAAKTGEYLMDKLRGVQERNP-VIGDVRGLGLMVGTEFT 398
                 567999***********************99887765114689994577888877764.....78*********999988889**********************************************************97..56776666541111112333.455555555.55567777766554403344567999****************************9.58999988754444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 1642.92
//
Query:       MMETSP1061-20121228|4527_1  [L=1202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.12s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 3966.27
//
Query:       MMETSP1061-20121228|4530_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-35  119.2   0.0    1.1e-34  117.3   0.0    1.8  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.0   2.7e-38   1.1e-34      12     193 ..     185     382 ..     177     383 .. 0.81

  Alignments for each domain:
  == domain 1    score: 117.3 bits;  conditional E-value: 2.7e-38
   TIGR00091  12 vegnkkplvleiGcGkGrfliklAkqnpek.nflGiEiekpivlkainkaeklglk..........Nl...kvlcgdakkllekfipkg.......slskvflnFpdPwfkkrhekrRivqpkflkevaevLkkgGvielktDveklfedmlkvlsend.lfeeiskead..lnnsplkeariiteleqrvlelgepvfklllekl 193
                 +e+ +kp++l+iGc +G fl+++A q+p++ n+lG+Ei++ +v +a +++ k +l+          N+   ++l    +++++     g       ++++v ++FpdP+fk+rh krR+v+p++++ +a+ +++g  ++l++Dv+ + + m+ ++ e++  f  ++++ +  ++++ l ++   te+e  vle + pv+++ ++++
  MMETSP1061-20121228|4530_1 185 FEDLSKPIFLDIGCSRGGFLLDMATQRPDDyNYLGLEIRPIVVYHAQDRIPKRNLTgrldfvgcnaNVdldRLLTLLTTTITN-----GgeekargNVEMVTIQFPDPHFKARHAKRRVVTPELVQTLARFMPEGATVYLQSDVQSVLDEMRLQFREESeYFRDTHESVEeyIPENILGVP---TEREVSVLERDLPVYRAKFTRT 382
                 44589***********************8649******************999999844444453332111122222233333.....223333559*********************************************************999998999999987622355566666...*******************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 2043.19
//
Query:       MMETSP1061-20121228|4529_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-88  294.2   0.0      2e-88  293.9   0.0    1.1  1  TIGR00500 met_pdase_I: methionine aminopeptidase, type I
    4.2e-26   90.0   0.3    4.4e-23   80.1   0.0    2.1  2  TIGR00501 met_pdase_II: methionine aminopeptidase, type II
    1.7e-10   37.9   0.2    5.1e-08   29.8   0.0    3.0  3  TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
    0.00047   17.2   0.0    0.00074   16.6   0.0    1.2  1  TIGR02993 ectoine_eutD: ectoine utilization protein EutD


Domain annotation for each model (and alignments):
>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.9   0.0   1.9e-91     2e-88       1     246 [.     127     372 ..     127     373 .. 0.99

  Alignments for each domain:
  == domain 1    score: 293.9 bits;  conditional E-value: 1.9e-91
   TIGR00500   1 islkskeeieklrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgykgfpgsvCiSvNevviHGipdkkvlkdgDivniDvgveldGyygDtaktllvgkvseeaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsvvkeytGHGiGrklHeepeilnyakketnvrlkeGmviaiEPmvnekteeiviaadgWtvltkdkklsaqfEhtvvvtengveiLte 246
                 i++k+++eiek+r++g+l++e+l+l+ r+vkpGv+t+e+d i+++ + + gA++++++y+gfp+s C+SvNev++HGipd++ l+dgD+vn+D++v+l+Gy+gD +++++vg++++  + ll+at ++  ka + +++g   ke+++++e+++   gfs v++++GHGiG  +H+ p+il+y ++e n ++  G +++iEPm++e+++++  ++d+Wt +t d++ saqfEht+vvt++gve +t+
  MMETSP1061-20121228|4529_1 127 IEVKKPDEIEKMRASGKLAREILDLAGRHVKPGVTTDEIDAIVHKAVLEAGAYPSPLNYHGFPKSCCTSVNEVICHGIPDDRPLQDGDVVNVDITVYLNGYHGDCSEMFVVGEIDPAGKALLQATYDCWIKACRFVQPGRDYKELGAIMEDHVVPLGFSSVRNFCGHGIGSVFHTTPNILHYRNNEPNGQMATGHTFTIEPMICEGSNKVLNWPDDWTATTVDGQRSAQFEHTLVVTKDGVEAMTA 372
                 789***********************************************************************************************************************************************************************************************************************************************9996 PP

>> TIGR00501  met_pdase_II: methionine aminopeptidase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.0   4.3e-26   4.4e-23       4     199 ..     134     337 ..     131     342 .. 0.90
   2 !    8.1   0.0   0.00036      0.37     271     294 ..     348     371 ..     341     372 .. 0.87

  Alignments for each domain:
  == domain 1    score: 80.1 bits;  conditional E-value: 4.3e-26
   TIGR00501   4 vaeklikaGkilkkvrreaaekivpGlkllevaefvenrirelGaeP......afP..anisinevaahftpkagdetvlkdedvvkldlGahvdGyiadta...itvdlddqykellkaakdaletaikeiradvevgeiGkvieeviesygvkPisnLtGhslaryrlhagksipnv.kerdttkleeGevlaiepfatdGvGlvt 199
                  +ek+   Gk+++ + + a  +++pG+   e+  +v + + e Ga P      +fP  +  s+nev  h  p   d++ l+d+dvv +d+ + ++Gy  d +   +  ++d+  k ll+a+ d   +a + ++++ +  e+G ++e+ +   g+  ++n++Gh++     h+ + i  + +++ + ++  G+ + iep+  +G  +v 
  MMETSP1061-20121228|4529_1 134 EIEKMRASGKLAREILDLAGRHVKPGVTTDEIDAIVHKAVLEAGAYPsplnyhGFPksCCTSVNEVICHGIP---DDRPLQDGDVVNVDITVYLNGYHGDCSemfVVGEIDPAGKALLQATYDCWIKACRFVQPGRDYKELGAIMEDHVVPLGFSSVRNFCGHGIGSV-FHTTPNILHYrNNEPNGQMATGHTFTIEPMICEGSNKVL 337
                 57899999**************************************9999999**977889********877...99********************9886433255689999****************************************************986.56666666651667799*****************99886 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00036
   TIGR00501 271 ksgslvaqfehtilveedgaevvt 294
                 ++g   aqfeht++v++dg+e +t
  MMETSP1061-20121228|4529_1 348 VDGQRSAQFEHTLVVTKDGVEAMT 371
                 678889*************99876 PP

>> TIGR00495  crvDNA_42K: DNA-binding protein, 42 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.014        14     145     172 ..     145     172 ..     134     180 .. 0.88
   2 !   29.8   0.0     5e-11   5.1e-08      79     171 ..     191     277 ..     184     306 .. 0.86
   3 ?    2.3   0.0     0.012        12     311     339 ..     349     377 ..     346     402 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.014
   TIGR00495 145 aslaleaalrlvkPGkkntevteviekv 172
                 a+  l+ a r vkPG +  e+  +++k 
  MMETSP1061-20121228|4529_1 145 AREILDLAGRHVKPGVTTDEIDAIVHKA 172
                 677899***************9999985 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 5e-11
   TIGR00495  79 PtavsvnnvvghfsPlksdelvlkeGdvvkidlGvhidGfialvahtivigaeesvtGrkadviaaaslaleaalrlvkPGkkntevteviek 171
                   + svn+v++h  P   d++ l++Gdvv +d+ v+++G+    ++ +v+g e + +G++   ++a+  +   a r v+PG+  +e+  ++e 
  MMETSP1061-20121228|4529_1 191 SCCTSVNEVICHGIP---DDRPLQDGDVVNVDITVYLNGYHGDCSEMFVVG-EIDPAGKA--LLQATYDCWIKACRFVQPGRDYKELGAIMED 277
                 4699********998...999*****************************9.66667875..7999999*************99999888875 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.012
   TIGR00495 311 eGeivaqfkftvlllpnGsirltsselke 339
                 +G+  aqf+ t++++++G + +t ++ + 
  MMETSP1061-20121228|4529_1 349 DGQRSAQFEHTLVVTKDGVEAMTAKNENS 377
                 79999**************9999876553 PP

>> TIGR02993  ectoine_eutD: ectoine utilization protein EutD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.2e-07   0.00074     149     266 ..     120     238 ..     112     257 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.2e-07
   TIGR02993 149 talvnwqravksetelkymrkaakivekmhqrilervepgmrkcdlvadiydagirgvdg.fggdypaivpllpsgadasaphltwddkplkvgegtffeiagvykryhvplsrtvflg 266
                 + l+ w   vk + e++ mr ++k+  ++ +    +v+pg+   ++ a +++a +   +     +y        + ++    h   dd+pl+ g+    +i+  ++ yh   s    +g
  MMETSP1061-20121228|4529_1 120 SPLLPWVIEVKKPDEIEKMRASGKLAREILDLAGRHVKPGVTTDEIDAIVHKAVLEAGAYpSPLNYHGFPKSCCTSVNEVICHGIPDDRPLQDGDVVNVDITVYLNGYHGDCSEMFVVG 238
                 568899***********************************999998888888776555434568888888889999999*****************************9999877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 2180.46
//
Query:       MMETSP1061-20121228|4528_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-46  154.5   2.7    2.5e-43  146.3   1.1    3.0  2  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    3.3e-16   57.0   0.0    2.9e-14   50.7   0.0    2.2  1  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
      1e-06   26.5   0.0    0.00021   18.9   0.0    2.3  2  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3   1.1   1.9e-46   2.5e-43      24     248 ..      47     299 ..      33     313 .. 0.75
   2 !    3.3   0.0    0.0065       8.9     262     284 ..     340     362 ..     319     366 .] 0.76

  Alignments for each domain:
  == domain 1    score: 146.3 bits;  conditional E-value: 1.9e-46
   TIGR00005  24 ikklieegqVkvnkkkvtanlklkikd.......gdlvtveveeeeeaevpvedkpldilfeDedilvidKPsglvvhptggyekntvlnallahlkeel.vsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefkskegtvdaplarvenkkglvavakss....................gkeavTvfkvler....dekaslvelkllTGRtHQiRVHlqylghplagDplYgnksv 248
                 ++++i+ + V+v+ +  +++++  + +       ++++  +++ +++++ + ++++l i++eD+++lv+dKPsg+ + p++g +   ++  + a+ k++l +    +vhRL+ dTSGl+++ak+++a +eL+  +++++v+++Y+alv g++++++g+++ p+ r+      v+++ ++                     k++ T+++v++r        + v+l  +TGR HQi VHl+++ghp++gD++Yg + +
  MMETSP1061-20121228|4528_1  47 VEEAIRVETVEVEAE--KEDYEGPLTAelinsrlEKQLA-KMRLKDQTSKQLQKEDLVIIHEDKNVLVVDKPSGVLTVPGKGDNPS-LAATVHANIKNSLpTGDHMVVHRLGMDTSGLIIMAKNKNAVRELNGVFRSRKVDRRYEALVAGHIEKDDGIINLPVMRDYRCPPFVRISTDDhqwalvdlttedvgkkilegPKQSITKYEVVSReflqGFPVTRVTLTSITGRYHQINVHLAAFGHPIIGDNVYGINGE 299
                 667777777777743..3333333322001001122333.4455556666677777************************997755.7777777777555678999********************************************************998765544444444333333333444558555566557899*******976533468*********************************8765 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0065
   TIGR00005 262 qaLhaselgfthpatgellelea 284
                  ++ha+ ++fthp+t+++ e++ 
  MMETSP1061-20121228|4528_1 340 PCVHAKYIKFTHPITKKEYEFST 362
                 478************99988765 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   2.1e-17   2.9e-14       4     167 ..     102     296 ..      99     303 .. 0.72

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 2.1e-17
   TIGR01621   4 ilfrhsdfvlinksegisvhkddg.etglleevakq....lgvekvylvhrldkvtsGilllalnaesaselsrlfaekkikktylalsdkkpkkkqGliiG.dmeksre..........gawklvr.ske..........npaitrfesvsiaeklrl....filkphtGkthqlrvalkslGsailGdslygk 167
                 i+++ ++ ++++k++g+     +g +  l+ +v  +    l  +   +vhrl   tsG++++a+n+++  el + f  +k+++ y al     +k  G+i    m+  r+           +w lv+ ++e            +it++e vs +  + +      l   tG+ hq+ v l ++G +i+Gd++yg 
  MMETSP1061-20121228|4528_1 102 IIHEDKNVLVVDKPSGVLTVPGKGdNPSLAATVHANiknsLPTGDHMVVHRLGMDTSGLIIMAKNKNAVRELNGVFRSRKVDRRYEALVAGHIEKDDGIINLpVMRDYRCppfvristddHQWALVDlTTEdvgkkilegpKQSITKYEVVSREFLQGFpvtrVTLTSITGRYHQINVHLAAFGHPIIGDNVYGI 296
                 67777889999999998655544405577777755411115567899*****************************************************751466556533333322224799997333312222222223589****99988544331111456789************************97 PP

>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-07   0.00021       2      80 ..     114     198 ..     113     201 .. 0.81
   2 !    5.2   0.0    0.0026       3.6      95     136 ..     244     289 ..     225     310 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.5e-07
   TIGR00093   2 KPkgvls...skdDpekrkvvkdllek.lrgkklaavGRLDrdseGlllltddgelqhrl..thpekevektYlvqvegsvtded 80 
                 KP+gvl+   + d p+  ++v+   ++ l +   + v RL +d++Gl++++++++ +  l  + ++++v++ Y + v+g+++++d
  MMETSP1061-20121228|4528_1 114 KPSGVLTvpgKGDNPSLAATVHANIKNsLPTGDHMVVHRLGMDTSGLIIMAKNKNAVRELngVFRSRKVDRRYEALVAGHIEKDD 198
                 888888722234566777888887777678888899***********************933458999************99875 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0026
   TIGR00093  95 tkpaklklikepel....kt.klrvtlteGrnrqvrRltaavglevl 136
                 +  +k ++++ + +    +  ++++t   Gr++q+   +aa+g +++
  MMETSP1061-20121228|4528_1 244 QSITKYEVVSRE-FlqgfPVtRVTLTSITGRYHQINVHLAAFGHPII 289
                 334444444332.2455544488888889*************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2012.83
//
Query:       MMETSP1061-20121228|4531_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.1e-117  388.4   0.0   9.2e-117  388.1   0.0    1.1  1  TIGR00092 TIGR00092: GTP-binding protein YchF
      1e-19   68.6   0.2      9e-19   65.5   0.1    2.2  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
      1e-06   26.1   0.1    2.7e-06   24.8   0.0    1.7  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      2e-06   25.5   0.0    4.2e-06   24.5   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.4e-05   22.0   0.0    9.2e-05   19.3   0.0    2.2  3  TIGR03156 GTP_HflX: GTP-binding protein HflX
    4.2e-05   20.6   0.0    6.7e-05   19.9   0.0    1.3  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00068   16.3   0.0    0.00094   15.8   0.0    1.1  1  TIGR00437 feoB: ferrous iron transport protein B
    0.00077   16.5   0.0     0.0012   15.8   0.0    1.2  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
      0.001   15.8   0.1     0.0025   14.5   0.0    1.6  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
     0.0047   14.4   0.0     0.0085   13.6   0.0    1.3  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  388.1   0.0  2.2e-119  9.2e-117       3     367 ..      29     420 ..      27     421 .. 0.91

  Alignments for each domain:
  == domain 1    score: 388.1 bits;  conditional E-value: 2.2e-119
   TIGR00092   3 lkaGivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpderldkLaeivksekvvpttlefvDiaGLvkGaskGeGLGnkfLaniRevdaivhvvRcfedddivhvegkvdPvrDlevineeLilaDlelve.......kkiekvkkkakeg...keakeelellekvleaLengkkvrklklneeelkiikslnlLtakPilivanvseddlvnkenkllekvkeivaefkegdkvvlvsaeleselselkee..ereeflkelg............leevsglnrviraaykllnLisfftaGkkevraWtikkGtkapqaagvihtDlekgfikaevikyedlielk....seqeakekGllrleGkdyivkdgDvllfkan 367
                 l+ G vGLpnvGks l + +  a  +eaanyPf+ti+pn+ +  vp++ ++ Lae +k+  vvp+ l++ DiaGL+kGas+G GLGn+fL++i  vd+i+h vR+f+ d+++hv+++vdP+rDle+i+ eL  +D  ++e       ++++k k  +++    k + +  +  +k l+ +e ++ +++ +++ +e++ii+    +t+kP ++v+n+s++++++k nk+l+k+ ++v+  + g ++++vs e+e+ l +lk++  ++++fl++ +             e  s ++r+ira++++l L+sfftaG+kevraWti kGt+apqaagvihtD+e+gfikaev +++d+++l+     + ++ke+G+ r+eGk+y+++dgD++ f  n
  MMETSP1061-20121228|4531_1  29 LSMGFVGLPNVGKSSLTNLLSGAMHAEAANYPFCTIDPNVVQCVVPSKDFKYLAECYKPPSVVPAVLKVTDIAGLIKGASEGAGLGNAFLSHIAAVDGIYHLVRAFDSDEVIHVDDSVDPIRDLETIQGELCAKDRSTLEgvlerekERVRKEKGLSRQAtnfKLSDVFETAYDKALALVEANTPIQTGEFKDSEVDIIRDWGCITTKPQIYVVNLSQKNYIRKGNKWLQKIADWVK-EHGGGQILPVSCEFEQSLFDLKDDpeNQKAFLADCKaqalkaglqgnqAEVRSMIPRLIRAGRQALCLQSFFTAGPKEVRAWTIMKGTTAPQAAGVIHTDFERGFIKAEVCAFNDFKALHkgeaTMAKVKEAGKYRQEGKQYVMQDGDIVVFMHN 420
                 688************************************************************************************************************************************9999988888775666555444444101444444455788889999999999999**********************************************9.788999***************9861145678777778899999999865566789**************************************************************998776678899***********************876 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.1   2.2e-21     9e-19     160     277 ..      31     165 ..      24     221 .. 0.69

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 2.2e-21
   TIGR02729 160 vglvGlpnaGkStllsavsaa.kpkiadYpFtTlvPnL..Gvvevee.........eks.....fvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpel 277
                 +g+vGlpn+GkS+l + +s a +++ a+YpF T+ Pn+   vv  ++           s     + + Di gli+gasegagLG+ FL Hi+    + hl+ + ++de   v+d     ++L++ + eL  k++ 
  MMETSP1061-20121228|4531_1  31 MGFVGLPNVGKSSLTNLLSGAmHAEAANYPFCTIDPNVvqCVVPSKDfkylaecykPPSvvpavLKVTDIAGLIKGASEGAGLGNAFLSHIAAVDGIYHLVRAFDSDEVIHVDDSVDPIRDLETIQGELCAKDRS 165
                 79*****************874689************8444665554222222221112111114589*********************************8877765544444444444455555555554444 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   6.6e-09   2.7e-06     113     154 ..      23      64 ..      11      73 .. 0.83
   2 ?   -3.6   0.0       2.9   1.2e+03      47      72 ..     234     259 ..     231     268 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 6.6e-09
   TIGR03596 113 glkkkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTk 154
                 g  k+++ +  vG+PNvGKS+l N l++  +a+++n p  T 
  MMETSP1061-20121228|4531_1  23 GRVKNTLSMGFVGLPNVGKSSLTNLLSGAMHAEAANYPFCTI 64 
                 45566778889**************************98885 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.9
   TIGR03596  47 knkprlivlnkaDladpektkkwlky 72 
                 + kp+++v+n +     +k +kwl++
  MMETSP1061-20121228|4531_1 234 TTKPQIYVVNLSQKNYIRKGNKWLQK 259
                 67888888887777777777777665 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     1e-08   4.2e-06       4      93 ..      29     133 ..      26     144 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1e-08
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt...............ykvnllDTaGqedfdairrlyvreverslevvdivilvldv 93 
                    ++vG ++vGKs+L+n l++   ++ + +p+ t d +  q+ + +k                + +++ D+aG ++ +       ++  + +  vd++ +++++
  MMETSP1061-20121228|4531_1  29 LSMGFVGLPNVGKSSLTNLLSGAMHAEAANYPFCTIDPNVVQCVVPSKDfkylaecykppsvvpAVLKVTDIAGLIKGASEGAGLGNAFLSHIAAVDGIYHLVRA 133
                 5679****************************9999999999999997799***********************9999888888899999999999999887765 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.2e-07   9.2e-05     187     237 ..      26      77 ..      16      84 .. 0.84
   2 ?   -3.1   0.0       1.5   6.1e+02     237     267 ..     138     171 ..     129     174 .. 0.65
   3 ?   -1.1   0.0      0.36   1.5e+02     106     134 ..     301     329 ..     299     341 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.2e-07
   TIGR03156 187 sevptvalvGYTNaGKstllnaltka.evlaedklFATLdpttrrlklpeee 237
                 +++ ++++vG  N GKs+l+n l +a ++ a++  F T+dp + ++ +p+++
  MMETSP1061-20121228|4531_1  26 KNTLSMGFVGLPNVGKSSLTNLLSGAmHAEAANYPFCTIDPNVVQCVVPSKD 77 
                 5677899*****************974778899**********999998875 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.5
   TIGR03156 237 eevlltDTVGFirkLPh...eLveaFkaTLeeva 267
                 e + + D V  ir+L +   eL +  ++TLe v 
  MMETSP1061-20121228|4531_1 138 EVIHVDDSVDPIRDLETiqgELCAKDRSTLEGVL 171
                 4455667777777775444478888888888776 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.36
   TIGR03156 106 rArtkegklqVelAqlkyllprlvrkgth 134
                 +A++ ++ lq + A+++ + prl+r+g++
  MMETSP1061-20121228|4531_1 301 KAQALKAGLQGNQAEVRSMIPRLIRAGRQ 329
                 68888999****************98864 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.6e-07   6.7e-05     174     217 ..      27      70 ..       3      81 .. 0.69

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.6e-07
   TIGR03594 174 epikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidie 217
                 +++ ++++G pNvGKS+L+N l g   + + + +  T D+  ++
  MMETSP1061-20121228|4531_1  27 NTLSMGFVGLPNVGKSSLTNLLSGAMHAEAANYPFCTIDPNVVQ 70 
                 45777888888888888888888877777777777777765544 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.3e-06   0.00094       1      43 [.      35      78 ..      35      81 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.3e-06
   TIGR00437  1 GnpNvGKstlfnaLtgs.nqkvgNwpGvTVekkegklelkgedi 43
                G pNvGKs+l n L+g+ +++ +N+p  T++   ++  +  +d+
  MMETSP1061-20121228|4531_1 35 GLPNVGKSSLTNLLSGAmHAEAANYPFCTIDPNVVQCVVPSKDF 78
                77*************974789**********9999887776665 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0     3e-06    0.0012     201     244 ..      20      63 ..       6      72 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3e-06
   TIGR00450 201 kkleklkdglklaivGktNvGKSSLlNallkkdraiVsdikGtt 244
                  ++ ++k+ l +  vG +NvGKSSL N+l+   +a  ++++  t
  MMETSP1061-20121228|4531_1  20 ARFGRVKNTLSMGFVGLPNVGKSSLTNLLSGAMHAEAANYPFCT 63 
                 4578999**********************988888777777666 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     6e-06    0.0025       7      46 ..      28      67 ..      24      72 .. 0.91
   2 ?   -2.8   0.0       1.1   4.5e+02      70      97 ..     395     422 ..     389     426 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6e-06
   TIGR03918  7 rlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpv 46
                 l ++++G  N+GKSsl N l g   a  +++p  T Dp 
  MMETSP1061-20121228|4531_1 28 TLSMGFVGLPNVGKSSLTNLLSGAMHAEAANYPFCTIDPN 67
                6789*****************************9999995 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.1
   TIGR03918  70 geLGelRvektrevlektdlallvvdae 97 
                  e G+ R e  + v++  d+++++ +++
  MMETSP1061-20121228|4531_1 395 KEAGKYRQEGKQYVMQDGDIVVFMHNTT 422
                 5679999999999999999999988776 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.1e-05    0.0085      18      54 ..      28      63 ..      18      73 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.1e-05
   TIGR03598 18 lpeiafaGrSNvGKSsliNaLtnrkklartSktPGrT 54
                +  + f+G  NvGKSsl N L +    a++++ P +T
  MMETSP1061-20121228|4531_1 28 TLSMGFVGLPNVGKSSLTNLLSGAM-HAEAANYPFCT 63
                56788**************999876.78888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 1818.04
//
Query:       MMETSP1061-20121228|4532_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1268.04
//
Query:       MMETSP1061-20121228|4533_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.7   0.1      0.044   11.2   0.1    1.2  1  TIGR04087 YqxM_for_SipW: YqxM protein


Domain annotation for each model (and alignments):
>> TIGR04087  YqxM_for_SipW: YqxM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.1e-05     0.044      11      79 ..       8      74 ..       1      94 [. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.1e-05
   TIGR04087 11 kkkkililvklllilylliaivsqltsdttasfsdvkkaslsvqagedfqdtddnwdgS..dLklteqtet 79
                 +++ l+++kll++ + l+ ++s  t+++ a  ++    +l  +a + +   +  w  S  d  ++ +t+t
  MMETSP1061-20121228|4533_1  8 VASSALLFTKLLIVSSSLCLLCSAWTQNSGAPQHQLTRRQLPPSARARW---KSSWGSSasDAVFS-RTTT 74
                45678999*************************************999*...66676551144454.3333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1457.62
//
Query:       MMETSP1061-20121228|4534_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1182.16
//
Query:       MMETSP1061-20121228|4536_1  [L=915]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-83  280.1   0.1    1.1e-83  280.1   0.1    3.1  3  TIGR00600 rad2: DNA excision repair protein (rad2)
    3.7e-23   80.0   3.3    1.7e-22   77.8   0.1    2.5  3  TIGR03674 fen_arch: flap structure-specific endonuclease
  ------ inclusion threshold ------
      0.014   13.2   0.1      0.031   12.0   0.1    1.5  1  TIGR04146 GGGPS_Afulg: phosphoglycerol geranylgeranyltransferase


Domain annotation for each model (and alignments):
>> TIGR00600  rad2: DNA excision repair protein (rad2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.6  13.0         3   4.1e+03     548     706 ..      67     233 ..       9     303 .. 0.58
   2 !  280.1   0.1   7.9e-87   1.1e-83     697    1029 ..     389     728 ..     361     737 .. 0.79
   3 ?   -8.3  10.8         3   4.1e+03     421     572 ..     745     905 ..     733     912 .. 0.48

  Alignments for each domain:
  == domain 1    score: -9.6 bits;  conditional E-value: 3
   TIGR00600 548 kliedkieqlelqnelslletklneSslssdaekegsensasevpeieelssvkaseealdllettq.lseaeevkeeaetgiqtkkvnesadselilkakeveeles........ekeesesddkfievdsvlseleeqseslsestdeseeaaeekvevaekeksk 706
                 +l +d  e+l +  e+  +e++  + s+  d +k+    + + v e e  + v+++++  d +e      e++   +  + ++++    +s+d++++  +k +e++ s         ++ +++dd ++++d +  + e ++e+ ++stde+  ++ + ++++++ ++ 
  MMETSP1061-20121228|4536_1  67 HLPKDVGENLPFCHEEDANEHRDGNNSVLADGKKSDYGDMGCSV-EKERRVDVTDEDKCDDEMEWEDgNNEFSVLTNYCDPEANDLSHRKSSDNNILTSSKIMENVRSetnenskgGEQRDDDDDDDDNLDWEDGDGEDEKEVIDISTDEKPADSGRDGDSNDGRNGL 233
                 22222223333333333444444444577777777777655554.556666777777777777765514456667788888888888888888888888888888888666666663344556666777777777777777776666665554444444444433332 PP

  == domain 2    score: 280.1 bits;  conditional E-value: 7.9e-87
   TIGR00600  697 vevaekekskevvellldeeeeeeieemaeeekdlddvknelqdisleelealeaflkaeqeslkakkqqqkRiadeVTgqmikEsqELLrlFGiPYivAPmEAEAqCakLdlldlvdGiiTDDSDvfLFGarkvYkNfFnknkfVEyYqyedikkqlgldrkklinLAyLLGSDYTeGlptvGpVsalEilnEFp..GdglepLlkFkeWyq.....eaqkdkkvkenpndtkvkkklkllq...........LtdeFPnplVaeAYlkPvVDdskssFlWGkPDldklReFlkaqlGWsrektdEvLlPvlk.kkkakqtqlridsFFrlaqqekeaakviksqrlkRav 1029
                  v v+ k++++ +    +++ e+++ ++ ++     d + n     s++   + e f  + +e+ ++ +   +     +T++m  E+  LLrlFGiPY+vAP EAEAqC +L++l lvdGi+T+DSD f+FG++ vYkN+F+++k+VE Y+++d  ++++l++  l+ LA LLG DYTeG+++vG V  +Eil+ F    d   +L +F++W +     ++ k +k+ e+   +  ++  kl +            +++FP++ V +AYl PvVD s++ F+WG+PDld l  F++ ++GW+   t   +lP+++  k+   +q ridsF r ++  k a  +i   ++kR+ 
  MMETSP1061-20121228|4536_1  389 VPVRGKSTVQSTPGISQSKTEHQMSTNSSN-----DMIDNSAWLNSVDTSAQAEDFTVKPREAVQSDQ-TMDPSNTGITEEMRAEVMQLLRLFGIPYVVAPAEAEAQCVELEKLGLVDGIVTEDSDTFVFGGQVVYKNIFEDKKYVEVYHAKDASEEMNLNQDSLVALAMLLGGDYTEGVKGVGIVNGMEILQAFDvaDDCEAGLTRFRKWLDgfdplDLAKLRKSVEDTTGFSTDRE-KLFHrkhhtartrwvAPKHFPDVKVLNAYLNPVVDTSRERFSWGIPDLDGLTTFCHDHMGWTDDETKKLILPIIQrMKEGSMRQTRIDSFMRYEDGIKFA--KI---QSKRLR 728 
                  444445555555555555554444444332.....333333333456666777889999999999876.77888899**********************************************************************************************************************732456679*******762222233444555555555555543.444445668899998899*********************************************************66777899*********66554444..33...344444 PP

  == domain 3    score: -8.3 bits;  conditional E-value: 3
   TIGR00600 421 sekktkvllissie..eeddaeellddgeeik.leaalalskveskkeavastke.akektssa......teavPkakqelvkvated..lkissev.eikdrkkelsleklkktvssessleseresklaipteaeknskliedkieqlelqnelslletklne 572
                   kk  + l++s +  +ed+ ++l + +e+   ++ + +  +++++ e +++  +  + kt+ +      + +  ++k++ + +++ +  + +   v +++  +++ s+  ++++ +++ +++++   k+a+p+ +++++ ++e+  e+ + +n +  +++   e
  MMETSP1061-20121228|4536_1 745 RRKKADTTLQASFDehKEDESDSLNESEEDFSsVDIVRNIDRMQDTAELQENDVTrCEWKTKVNdttlqpK-QYNEKKNRSLAALSTAsaSTTAIAVsSTNSAPNNASMDDTNMPITHHRRVHTN-LPKTAPPAYQKHSNTFLEE--ENSNTTNSQDCDKQGSSE 905
                 44444444444433114666666666555543134444455555555555544333222333222112121.22222222222222220022222220334567788888888887777777765.4677888887887777777..555555555555554444 PP

>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.8   0.1   1.2e-25   1.7e-22     113     257 ..     446     578 ..     430     590 .. 0.89
   2 ?    2.2   0.0     0.012        16     275     337 ..     644     710 ..     624     711 .. 0.76
   3 ?   -3.4   0.2      0.64   8.7e+02     294     327 ..     758     791 ..     751     799 .. 0.73

  Alignments for each domain:
  == domain 1    score: 77.8 bits;  conditional E-value: 1.2e-25
   TIGR03674 113 dleeaakyakrsarldeeivedskkLlellgipyvqApsegEAqaaymvkkgdvdavgsqDYDsLlfGaprlvrnltisgkrklpkknvyvevkpElieLeevLkelgitreqLidiailvGTDynegvkgiGpkkalklikelg 257
                  +++ + ++ + + ++ee+  +  +Ll+l+gipyv Ap+e+EAq+  + k g vd ++++D D++ fG + + +n+   +k             +E+ + ++  +e++++++ L+++a+l+G Dy egvkg+G  +++++++ ++
  MMETSP1061-20121228|4536_1 446 AVQSDQTMDPSNTGITEEMRAEVMQLLRLFGIPYVVAPAEAEAQCVELEKLGLVDGIVTEDSDTFVFGGQVVYKNIFEDKK------------YVEVYHAKDASEEMNLNQDSLVALAMLLGGDYTEGVKGVGIVNGMEILQAFD 578
                 45555666778889*************************************************************987664............5788899**************************************9998765 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.012
   TIGR03674 275 eirelFlnPpvtddY.elelkkpdkekiieflveehdfseervekal....erlekakkskqktLdaw 337
                 ++ + +lnP v ++  ++++  pd +++++f  ++   + ++ +k +    +r+++  + +q+++d++
  MMETSP1061-20121228|4536_1 644 KVLNAYLNPVVDTSReRFSWGIPDLDGLTTFCHDHMGWTDDETKKLIlpiiQRMKEG-SMRQTRIDSF 710
                 688899***9976651689*******************9999998651111555554.7788888887 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 0.64
   TIGR03674 294 kkpdkekiieflveehdfseervekalerlekak 327
                 ++ ++++  ++   e+dfs+  + ++++r++++ 
  MMETSP1061-20121228|4536_1 758 DEHKEDESDSLNESEEDFSSVDIVRNIDRMQDTA 791
                 5556666666667799999999999999999873 PP

>> TIGR04146  GGGPS_Afulg: phosphoglycerol geranylgeranyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.3e-05     0.031      28     125 ..     448     549 ..     426     553 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.3e-05
   TIGR04146  28 gtdalmlsGtlnvtkenvaelldkvkeyglPlvlePadpeavvldgidylfvpsvlntkeaewivGkhkewvkeaekikwdkvip....eayivlnpesava 125
                 ++d  m      +t+e  ae+++ ++ +g+P v+ Pa++ea  ++  ++  v  ++  ++ +++ G    + + +e++k+ +v +       + ln++s va
  MMETSP1061-20121228|4536_1 448 QSDQTMDPSNTGITEEMRAEVMQLLRLFGIPYVVAPAEAEAQCVELEKLGLVDGIVTEDSDTFVFGGQVVYKNIFEDKKYVEVYHakdaSEEMNLNQDSLVA 549
                 556667777788***************************9999994455689999999999*****999999999999999887655443346666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (915 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.34
# Mc/sec: 3552.06
//
Query:       MMETSP1061-20121228|4535_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1908.77
//
Query:       MMETSP1061-20121228|4538_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.4   0.0      0.038   12.0   0.0    1.7  1  TIGR01690 ICE_RAQPRD: integrative conjugative element protein, RAQPRD family
        3.8    4.5   7.8        8.2    3.4   5.4    1.5  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR01690  ICE_RAQPRD: integrative conjugative element protein, RAQPRD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.9e-05     0.038      30      78 ..      73     121 ..      56     123 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.9e-05
   TIGR01690  30 irqLdalerlaeraaaaakqsekeRyhfDYarlraDlkriraGiqqyla 78 
                 ++q++ + +  e+a++   + +  R ++DYar+ +D +++r+  q yl+
  MMETSP1061-20121228|4538_1  73 AKQFKTASEAYENATKCPVSGSVGRIWLDYARFLEDRNKVRSAQQVYLK 121
                 688889999999999999999999*********************9997 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   5.4     0.004       8.2      28      84 ..     514     580 ..     506     598 .. 0.60

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.004
   TIGR02794  28 epepegg..eiiqAvlvDpaavaqqanrlqqqekkaakke........pkpeepkqerqkkleqqae 84 
                  p p g+   + +A+   p  vaqq +++qqq  ++++++        p+p++p++ + ++l   + 
  MMETSP1061-20121228|4538_1 514 SPVPMGVsgGMGSAQYPIPMGVAQQQQQQQQQLPPPPPPPphyashlpPPPPPPPPPPPPQLLPPPG 580
                 34444423355566665588999**9999999999999999*****984444444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 2395.21
//
Query:       MMETSP1061-20121228|4539_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       294  (0.0716724); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 1995.07
//
Query:       MMETSP1061-20121228|4537_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2172.74
//
Query:       MMETSP1061-20121228|4540_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   10.8   1.6      0.088    9.4   0.3    2.1  2  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family


Domain annotation for each model (and alignments):
>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.024        98     371     398 ..     429     456 ..     426     481 .. 0.64
   2 ?    9.4   0.3   2.1e-05     0.088     323     374 ..     580     631 ..     558     633 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.024
   TIGR00089 371 vGktlevLveeeekkkegelsgrtennk 398
                 vGk ++vLv++e++ k++++s+r++ + 
  MMETSP1061-20121228|4540_1 429 VGKDMNVLVNGESHLKDKQTSNRSHMMS 456
                 89********976666666555554433 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 2.1e-05
   TIGR00089 323 lhvfkYspregtpaaelkdqvpeevkkeRlerLkelqkeiskeknkkyvGkt 374
                   ++++ +r++ ++ + +dq+p+ + +eR+e+L+++   + ++k+kk  G++
  MMETSP1061-20121228|4540_1 580 HQLAIWVKRQRRQWKNKMDQLPNCMTHERQEALEAIGFVWDMKKEKKQKGNK 631
                 4578899************************************999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 3233.73
//
Query:       MMETSP1061-20121228|4542_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-46  157.0   0.0    3.8e-34  115.8   0.0    2.0  2  TIGR01179 galE: UDP-glucose 4-epimerase
    7.4e-39  131.5   0.1    9.5e-39  131.2   0.0    1.1  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    5.5e-37  125.2   0.0    6.7e-37  125.0   0.0    1.1  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    3.4e-33  113.0   0.0    4.9e-33  112.4   0.0    1.2  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    1.1e-22   78.5   0.0    2.6e-18   64.1   0.0    2.3  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    2.9e-14   50.9   0.1    2.1e-13   48.0   0.1    2.1  2  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    6.7e-12   42.7   0.0    1.6e-07   28.3   0.0    2.2  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    2.9e-07   27.7   0.0    4.3e-07   27.1   0.0    1.2  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    1.6e-06   25.1   0.1    9.5e-06   22.6   0.1    2.0  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
    0.00013   19.4   0.0    0.00083   16.8   0.0    2.0  1  TIGR01777 yfcH: TIGR01777 family protein
    0.00061   16.9   0.5       0.48    7.4   0.1    2.5  2  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.0     1e-36   3.8e-34       1     178 [.     107     290 ..     107     298 .. 0.93
   2 !   39.3   0.0     2e-13   7.3e-11     222     329 ..     318     426 ..     306     429 .. 0.90

  Alignments for each domain:
  == domain 1    score: 115.8 bits;  conditional E-value: 1e-36
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekit....evklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagv..kkliFsssaavYgesekvpisEespln.pinpYGrsklmvErilkdlkkadkelkvviLRYFnvaG 178
                 ++LvtG+aG+iG h++ +l++ g+  + +Dn+ +  ++ lk  +  +     +++  gd+ d+ kl++v+++++i   iH+aa++ v  s+++P  Y +nn+  t++Lle+m++  +  + l+++ss++vYg++ kvp+ E+ p++ p++ Y ++k+  E i + + +  ++++ + LR+F v G
  MMETSP1061-20121228|4542_1 107 NVLVTGAAGFIGMHTAIELKRLGMTPIGYDNINNYYSTDLKGSRISElksrGIHFELGDVCDADKLKEVIRNHNITRFIHLAAQAGVRYSLDHPFDYVHNNIDCTVNLLEVMKELDLreQPLVYASSSSVYGNNVKVPFLETDPVEdPASLYAATKRSDELIARTYFNL-YNISSIGLRFFTVYG 290
                 59********************************99999986552223366899***********************************************************98762257************************99*******************999.*************99 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 2e-13
   TIGR01179 222 GtcvRDyiHveDlaeaHlaalealeeg..gesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWekklk 329
                 G + RD+ +v+D+ ++ +++l +  e    e+ev nlG+g+   + + ++ v++ +g++ ++e     +GD+++ +ad sk++  lg+kp+   +ee i +  +W ++++
  MMETSP1061-20121228|4542_1 318 GQSRRDFTYVDDIVQGVVNSLLVDREAtsIEAEVVNLGNGKPVLLADFVRIVEERVGRPANIESLGMQKGDVPKTYADISKARYLLGYKPTTS-IEEGIDKFVTWFEEHE 426
                 7788****************866555422799**********************************************************998.9999999999988765 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.2   0.0   2.6e-41   9.5e-39       2     317 ..     108     428 ..     107     432 .. 0.84

  Alignments for each domain:
  == domain 1    score: 131.2 bits;  conditional E-value: 2.6e-41
   TIGR01181   2 lLvtGGaGfiGsnfvryileetpdaevvvlDkLt..yagnk..enlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelk.evrllhistDevyGdlekddaeftettpla.PssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpekliPllitnalagkklpvyGdGqqvrDwlyveDhcraielvl.....ekgrvgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWylenesw 317
                 +LvtG aGfiG       l++ + ++ + +D+++  y++ +  + + +l+    ++f+ gd++d+++++++++++++   +++aa++ v  s+++p ++++ n+  t  lle++++    e  l+  s   vyG+  k    f et+p++ P s y+a+k + +l+ r+y++ y++  +  r    yGpy  p+    ++  ++ +++ ++v+ +Gq  rD+ yv+D ++++   l     +++ + ev n+g ++     + v+i+ e +++  +  +    ++G+  +   d sk +  Lg+kp++++eeg+ k v W++e+e++
  MMETSP1061-20121228|4542_1 108 VLVTGAAGFIGMHTA-IELKRLG-MTPIGYDNINnyYSTDLkgSRISELKS-RGIHFELGDVCDADKLKEVIRNHNITRFIHLAAQAGVRYSLDHPFDYVHNNIDCTVNLLEVMKELDLrEQPLVYASSSSVYGNNVKV--PFLETDPVEdPASLYAATKRSDELIARTYFNLYNISSIGLRFFTVYGPYGRPDMAPWMFTDRIFNNETIQVFNHGQSRRDFTYVDDIVQGVVNSLlvdreATSIEAEVVNLGNGKPVLLADFVRIVEERVGRPANIESL-GMQKGDVPKTYADISKARYLLGYKPTTSIEEGIDKFVTWFEEHEAS 428
                 8**********8654.4456564.557889988543454441145666665.6799***********************************************************97542555***********98888..69****9855*****************************************98655555678999************************9865441221122346799***********************87665555.555666555555******************************9975 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.0   1.8e-39   6.7e-37       1     296 [.     108     409 ..     108     410 .. 0.86

  Alignments for each domain:
  == domain 1    score: 125.0 bits;  conditional E-value: 1.8e-39
   TIGR04180   1 vlvtGadGfiGshlvealvekGae...vralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvd..vvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevek..vvhtstsevyGtaqyvPidekhplq.aqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPtiitqilsgkkkiklGsl.sPtrdfnyvkdtvegfiavaesd...kav.GevinigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgwkpky 296
                 vlvtGa GfiG h + +l + G++      + +y s++ +G   ++++  +  i+  lGd+ da+ +k+++++ +    +hlaa  ++ ys   p  yv+ n+  t+n+l+  ++l+++   +v +s+s vyG    vP  e+ p++ + s y+a+k + + +a ++++ +++  + +r f  yGP      + P + t  + ++++i++ +  +  rdf+yv d+v+g+++    d   +++  ev+n+g+++ + ++d v++++e +g   +i++    l  +k +v + +ad sk++ l+g+kp++
  MMETSP1061-20121228|4542_1 108 VLVTGAAGFIGMHTAIELKRLGMTpigYDNINNYYSTDLKGS--RISELKSRGIHFELGDVCDADKLKEVIRNHNitRFIHLAAQAGVRYSLDHPFDYVHNNIDCTVNLLEVMKELDLREqpLVYASSSSVYGNNVKVPFLETDPVEdPASLYAATKRSDELIARTYFNLYNISSIGLRFFTVYGPYGR-PDMAPWMFTDRIFNNETIQVFNHgQSRRDFTYVDDIVQGVVNSLLVDreaTSIeAEVVNLGNGKPVLLADFVRIVEERVGRPANIES----LGMQKGDVPKTYADISKARYLLGYKPTT 409
                 89*******************987222456777778887774..555556889*****************9876511689***********************************99975449**********************863799***********************************754.5689****99999999999866527789***********99844333111233489*************************999975....67799********************975 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.4   0.0   1.3e-35   4.9e-33       1     314 [.     108     423 ..     108     425 .. 0.83

  Alignments for each domain:
  == domain 1    score: 112.4 bits;  conditional E-value: 1.3e-35
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrk.......gekllnlkdeeiadyidkeellerleke.elkkveavfHegAisdT.teldgel.lmenNyeyskellelcae...kevkliYASSAavYGds.eeefreekelerPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvk..vnllllekkeks...GifnvGtgkarsfndlaaavvkalgkdekieyidmPealrgkyqkfTqadleklreagykkeflsleegvkdYvkell 314
                 ++vTG+aGfiG   + +l++ g t i   D++++       g+++ +lk + i   + + +  ++l++  + ++++  +H +A +   + ld+ +  ++nN++ + +lle+ +e   +e +l+YASS +vYG++ + +f e++ +e P  +Y+  K   Del++++ ++ ++  + +Glr+F VyGp    + +ma  +f  +++i +++++++F++ +        RDF+yv+D+v+  vn ll++++++s    + n+G gk     d + +v + +g+  +ie + m +         T ad++k+r  + +k+++s+eeg+ ++v+++ 
  MMETSP1061-20121228|4542_1 108 VLVTGAAGFIGMHTAIELKRLGMTPIG-YDNINNyystdlkGSRISELKSRGIHFELGDVCDADKLKEViRNHNITRFIHLAAQAGVrYSLDHPFdYVHNNIDCTVNLLEVMKEldlREQPLVYASSSSVYGNNvKVPFLETDPVEDPASLYAATKRS-DELIARTYFNLYNI-SSIGLRFFTVYGPYG--RPDMAPWMF--TDRIFNNETIQVFNHGQSR------RDFTYVDDIVQgvVNSLLVDREATSieaEVVNLGNGKPVLLADFVRIVEERVGRPANIESLGMQKG---D-VPKTYADISKARYLLGYKPTTSIEEGIDKFVTWFE 423
                 69********************99875.799999999999988999**999887555555555555555455789999999987764256677664579*************994344679***********973568999999***********986.78777777676665.89***********75..678998776..689**********876655......**********95566677777655433379************************99***9999765...3.34588***************************986 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0     7e-21   2.6e-18       6     172 ..     107     276 ..     104     283 .. 0.84
   2 !   11.9   0.0   5.4e-05      0.02     303     340 ..     395     432 ..     360     439 .. 0.85

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 7e-21
   TIGR02622   6 kvlvtGhtGfkGsWlslwLkelGaevaGysldpetkpnl...fellklakklkdssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvka.vvlvtsDkvYenkewvwgyretdalGG.hDpYsaskaaaelvvasyrksf 172
                 +vlvtG  Gf G   ++ Lk+lG + +Gy    +          + +l+++  +   lgd+ da+kl+++i++++    +hlaaq+ vr s ++P++  + n+  tvnlle++++l+  +  +v   s  vY n+     + etd++      Y+a k + el++++y + +
  MMETSP1061-20121228|4542_1 107 NVLVTGAAGFIGMHTAIELKRLGMTPIGYDNINNYYSTDlkgSRISELKSRGIH-FELGDVCDADKLKEVIRNHNITRFIHLAAQAGVRYSLDHPFDYVHNNIDCTVNLLEVMKELDLREQpLVYASSSSVYGNN-VKVPFLETDPVEDpASLYAATKRSDELIARTYFNLY 276
                 79***************************8655444333011344555555544.689**********************************************************9766527888899999997.5679******9752678***************9876 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 5.4e-05
   TIGR02622 303 dsdkakkklgwkprlsleeaveatveWykeaylkgeev 340
                 d++ka+  lg+kp+ s+ee +++ v+W++e  +++  +
  MMETSP1061-20121228|4542_1 395 DISKARYLLGYKPTTSIEEGIDKFVTWFEEHEASKYRM 432
                 89**************************9766665555 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.1   5.7e-16   2.1e-13      55     178 ..     157     281 ..     109     375 .. 0.87
   2 ?   -0.1   0.0      0.24        88     305     335 ..     389     419 ..     365     423 .. 0.78

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 5.7e-16
   TIGR01472  55 a.lflhyGdltdsssllklieeikpteiynlaaqshvkvsfeip.eytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektpfn.prspyaaaklyayyivvnyreayglfav 178
                 + +++  Gd++d+  l+++i++ + t    laaq+ v+ s++ p +y  + +   t++lle ++ ldl ++   y as+s +yG+  ++p  e+ p + p s yaa+k     i+  y + y++ ++
  MMETSP1061-20121228|4542_1 157 RgIHFELGDVCDADKLKEVIRNHNITRFIHLAAQAGVRYSLDHPfDYVHNNI-DCTVNLLEVMKELDLREQPLVY-ASSSSVYGNNVKVPFLETDPVEdPASLYAATKRSDELIARTYFNLYNISSI 281
                 2477788************************************956766655.579************9988777.88899***************9549**************9999999998654 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.24
   TIGR01472 305 vdlllGdatkakeklgwkrevslkelvkemv 335
                 v     d +ka+  lg+k+ +s++e + + v
  MMETSP1061-20121228|4542_1 389 VPKTYADISKARYLLGYKPTTSIEEGIDKFV 419
                 445567899**************99887766 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   4.3e-10   1.6e-07       2     122 ..     107     242 ..     106     273 .. 0.76
   2 !   12.3   0.0   3.2e-05     0.012     262     325 ..     361     426 ..     336     428 .. 0.69

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 4.3e-10
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGee......vrv...lvrktsdrrnleeldvEiveGdlkdeaslkkalk..GcealfHvAAdy..rlwakdpeelykanvegtravleaAleagver..vvytssvatlgvked 122
                 +vlvtGa+GF+G++ + +l++ G++      +        k+s+ ++l++  +    Gd+ d+++lk+ ++   +++ +H+AA+   r    +p + +++n++ t ++le  +e +++   +vy+ss ++ g++ +
  MMETSP1061-20121228|4542_1 107 NVLVTGAAGFIGMHTAIELKRLGMTpigydnINNyysTDLKGSRISELKSRGIHFELGDVCDADKLKEVIRnhNITRFIHLAAQAgvRYSLDHPFDYVHNNIDCTVNLLEVMKELDLREqpLVYASSSSVYGNNVK 242
                 69*****************99997432222244411145567777788887888889***********9972257889****996224556778899*****************99975448*****999987655 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.2e-05
   TIGR03466 262 pvallaealakltgkePlvtvdgvrmak...kkmffssakAereLgyrq.rpaeealkdaveWfraeg 325
                  +a +   + + +g+    +++++ m k    k + + +kA+  Lgy+  +++ee++++ v+Wf++++
  MMETSP1061-20121228|4542_1 361 LLADFVRIVEERVGRPA--NIESLGMQKgdvPKTYADISKARYLLGYKPtTSIEEGIDKFVTWFEEHE 426
                 55555555555555544..444555544112478*************972589************986 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.2e-09   4.3e-07       2     191 ..     108     332 ..     107     355 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.2e-09
   TIGR01214   2 ilitGakgqlgreLveqlskegsevvaltrs........................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvgal...lvhiSTDYvFDGekkrpYreedet.nPlnvYgqsKlaGEvavraase....kalivRtswlygasggrnFvktmlrla.kereelkvvad.Qig.sPTyakdlae 191
                 +l+tGa+g +g + + +l++ g++ + +++                           d+ d+++l+e++r+ +    ++ aA   V  +  ++    + N   t nl ++ ++++ +   lv+ S   v+  + k p+ e+d++  P ++Y+++K   E+++r +++    +++ +R   +yg +g  + + +m      ++e ++v++  Q     Ty++d+ +
  MMETSP1061-20121228|4542_1 108 VLVTGAAGFIGMHTAIELKRLGMTPIGYDNInnyystdlkgsriselksrgihfeLGDVCDADKLKEVIRNHNITRFIHLAAQAGVRYSLDHPFDYVHNNIDCTVNLLEVMKELDLReqpLVYASSSSVYGNNVKVPFLETDPVeDPASLYAATKRSDELIARTYFNlyniSSIGLRFFTVYGPYGRPDMAPWMFTDRiFNNETIQVFNHgQSRrDFTYVDDIVQ 332
                 899***********99999998888888776789999***************997779*******************************9999999999*************997543339*********************9746******************998665455669*********9999999998644378888888864233213466666655 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.1   2.6e-08   9.5e-06       6     116 ..     107     222 ..     104     290 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2.6e-08
   TIGR03589   6 silitGgtGsfGkkfikkl....lekykvkkiiiysrdelkqfelqqkfeedklrffiGdvrdkerleraled..vdlvvhaaalkqvpaaeynPleciktnieGaenvidaaldkg 116
                 ++l+tG++G  G +   +l    ++    ++i  y   +lk +++ +  ++  + f +Gdv d ++l++ +++  +   +h aa   v  +   P++ ++ ni+ + n+++   + +
  MMETSP1061-20121228|4542_1 107 NVLVTGAAGFIGMHTAIELkrlgMTPIGYDNINNYYSTDLKGSRISE-LKSRGIHFELGDVCDADKLKEVIRNhnITRFIHLAAQAGVRYSLDHPFDYVHNNIDCTVNLLEVMKELD 222
                 78999999999977554431212233355778888888899988864.67789*****************986227779******************************98765544 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.2e-06   0.00083       1     246 [.     108     378 ..     108     382 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.2e-06
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee..............aeee....alegvdavinLaGepiadkrwteerkkeileSRikttealvelikkakqkpkvlisasavgyYgeseekelteee.eeagddFlaklceeWEeaaqa.aeklgvrvvllRtgivLgekG..Galakll..llfklglggklGsGrqwlsWihleDlvkli.lfal.eneevs...GvvNataPepvrnkefakalakalhrpal 246
                 vl+tG+ G+iG + + el++ g + +     ++  +++ k s  ++ ++              +         ++++  i+La +  +  r++ ++    ++  i+ t  l+e++k+ + + + l+ as+ ++Yg++ + ++ e++  e+     a + ++ E +a++ ++  ++  + lR+  v g+ G   + + ++  ++f+  +   + +G++   +  ++D+v+ + + +l ++e++s    vvN+   +pv  ++f++ + + ++rpa 
  MMETSP1061-20121228|4542_1 108 VLVTGAAGFIGMHTAIELKRLGMTPIGYDNINNYYSTDLKGSRISELKSrgihfelgdvcdadK--LkeviRNHNITRFIHLAAQAGV--RYSLDHPFDYVHNNIDCTVNLLEVMKELDLREQPLVYASSSSVYGNNVKVPFLETDpVEDPASLYAATKRSDELIARTyFNLYNISSIGLRFFTVYGPYGrpDMAPWMFtdRIFNNETIQVFNHGQSRRDFTYVDDIVQGVvNSLLvDREATSieaEVVNLGNGKPVLLADFVRIVEERVGRPAN 378
                 6899999999999999999887665444444444444443333333333455556666655431..134447788999*****99877..9***************************999999*********************9644444466667777777776525566777778888888888873223344431234555566667777777777777887775413333133322222246777777777777777777777777765 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0013      0.48       1      21 [.     107     127 ..     107     132 .. 0.85
   2 !    7.2   0.0    0.0015      0.57     111     287 ..     206     380 ..     170     386 .. 0.70

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0013
   TIGR01746   1 tvlLTGAtGfLGaylleeLlr 21 
                 +vl+TGA Gf+G + + eL r
  MMETSP1061-20121228|4542_1 107 NVLVTGAAGFIGMHTAIELKR 127
                 69***********98877755 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0015
   TIGR01746 111 aNVegtvevlrlaasgkakp..liyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdrglpvtivRpGrilgdsetGainssdillrlvkaclelg...lvPdleelteellpvdfvaraivala.sqlaaea.ggavfhvvnpkealsldefleilke.agyelklv 287
                  N++ tv++l++  +  ++   l+y S+ sv+    +++   ++d+ e + +     Ya++K   El+ r   +     +i  +G   +  ++G +   d+   ++   +      +v +  +++ + + vd++++ +v +     +a +  ++v+++ n+ +++ l++f+ i++e  g++ +++
  MMETSP1061-20121228|4542_1 206 NNIDCTVNLLEVMKELDLREqpLVYASSSSVYGNNVKVP-FLETDPVEDPASL----YAATKRSDELIARTYFNL---YNISSIGLRFF-TVYGPYGRPDMAPWMFTDRIFNNetiQVFNHGQSRRDFTYVDDIVQGVVNSLlVDREATSiEAEVVNLGNG-KPVLLADFVRIVEErVGRPANIE 380
                 6999999999998876655333******99998755444.4556665555554....999999999999998888...55555555555.45666666666544444444333233444445567789999988776665540445554588999999996.56999999999999888887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 1950.03
//
Query:       MMETSP1061-20121228|4541_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 2761.62
//
Query:       MMETSP1061-20121228|4545_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-24   83.3   0.3      9e-24   82.2   0.2    1.5  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    1.5e-23   81.5   0.0    1.9e-23   81.2   0.0    1.2  1  TIGR01929 menB: naphthoate synthase
    2.4e-22   77.3   0.0    3.6e-22   76.7   0.0    1.3  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    2.2e-20   70.3   0.1    2.8e-20   70.0   0.1    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    3.5e-14   49.6   0.0    4.6e-14   49.2   0.0    1.1  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
    3.9e-12   43.1   0.0    4.9e-12   42.8   0.0    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
      8e-10   36.3   0.5    1.2e-09   35.7   0.3    1.2  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    1.3e-05   22.3   0.0    1.9e-05   21.7   0.0    1.2  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
  ------ inclusion threshold ------
      0.014   12.0   0.1      0.024   11.2   0.0    1.3  1  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase


Domain annotation for each model (and alignments):
>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.2     2e-26     9e-24      12     198 ..     113     316 ..     104     330 .. 0.79

  Alignments for each domain:
  == domain 1    score: 82.2 bits;  conditional E-value: 2e-26
   TIGR02280  12 ltlnrpdklnsfteem...........haelaealerverddvrallltGaG.rGfcaGqdlsernvtkg.aapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqa..faklGlipdsGGtwllprlvGr...arakglallgekldaetaaewGliwqvvddealadevqalaahlakq 198
                 +tl  p+  n++t em            ael++a ++++ +++ a++l G G + f+aG dl  ++  ++ ++     ++ +fy+ ++    ++p pv+ a+ G a GaGa lala+d+ +aa   + i    f++lG ip   G+  l + vG+   a a+ + llg  l  e+a++ Gl+ + v+ ++++de+++la ++a++
  MMETSP1061-20121228|4545_1 113 ITLKSPESYNALTVEMgrefqslvsrlEAELTDAESNADTKNIGAIVLCGEGdKAFSAGGDLRWLHSLSEnSVHANVDAMLRFYKSFLCVRDQIPVPVIGALHGPAVGAGACLALACDLRVAASGDRPILGfpFSRLG-IPTGMGALHLLQTVGKlssAEAAEILLLGRTLTGEEARDLGLVNRLVSRDTVKDEAKKLAFEIART 316
                 56666666666666551110000000055566666666677799******99679*******9998877745555667888*******************************************99999762269999.69999999999999965448899999**********************************999875 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   4.2e-26   1.9e-23      13     223 ..     110     338 ..     100     383 .. 0.76

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 4.2e-26
   TIGR01929  13 iakiaidrpkvrnafrpktvde.......llealddar...edsdiGvviltGaGdkafcsGGdqk.vrgksG.ykdesGesrlnvlevqrlir.tlpkpvialvnGyaiGGGhvlhvvcdltias..enarfgqtgpkvGsfdgGyGsaylarivGq...kkareifflcrqydaeeaekmGlvnavvelaeleketvewareilak.splalrllkaalnadldGqaG 223
                 i  i+++ p+ +na+  +   e       l + l+da      ++iG ++l+G+Gdkaf +GGd + +++ s    +++  + l+  +    +r  +p pvi  + G a+G G  l + cdl +a+  ++ ++g   +++G   +G G+ +l ++vG+     a ei +l+r  + eea+++Glvn +v  + +++e+ ++a ei     p+a+r + ++l + +dG  G
  MMETSP1061-20121228|4545_1 110 IGIITLKSPESYNALTVEMGREfqslvsrLEAELTDAEsnaDTKNIGAIVLCGEGDKAFSAGGDLRwLHSLSEnSVHANVDAMLRFYKSFLCVRdQIPVPVIGALHGPAVGAGACLALACDLRVAAsgDRPILGFPFSRLG-IPTGMGALHLLQTVGKlssAEAAEILLLGRTLTGEEARDLGLVNRLVSRDTVKDEAKKLAFEIARTaHPVAVRSMVRSLRLGTDGGGG 338
                 555666677777766544333311100002223334431114578*******************883444444234445556677777666777469***************************99889999*******99.689************833346899***************************************86527****************9765 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   7.9e-25   3.6e-22      22     254 ..     131     381 ..     103     383 .. 0.72

  Alignments for each domain:
  == domain 1    score: 76.7 bits;  conditional E-value: 7.9e-25
   TIGR03210  22 klnafrgrtcdelikalkkagydreigvivlagagdkafctggd....qsthdgnydgrgviglpveelhsaird.vakpviarvqgyaigggnvlvticdltias..ekavlgqvgpkvgsvdpgygtallarvvge...kkareiwylcrrysakealamglvnavvphdqldaevkkwcdeivek.sptalaiakrsfnvdtahqagiaglg.........myalklyydteesregvkalqekrkpefr 254
                 +++++ +r   el +a  +a+  ++ig+ivl+g gdkaf +ggd     s  + +        l + +   ++rd ++ pvi  ++g a+g g  l+  cdl +a+  ++ +lg    ++g +  g+g+ +l + vg+     a ei  l r  +++ea  +glvn +v  d +  e kk + ei     p a+    rs+ + t+   g +g g          +a  + y+  +  eg +a + +  p f 
  MMETSP1061-20121228|4545_1 131 EFQSLVSRLEAELTDAESNAD-TKNIGAIVLCGEGDKAFSAGGDlrwlHSLSENSVHANVDAMLRFYKSFLCVRDqIPVPVIGALHGPAVGAGACLALACDLRVAAsgDRPILGFPFSRLG-IPTGMGALHLLQTVGKlssAEAAEILLLGRTLTGEEARDLGLVNRLVSRDTVKDEAKKLAFEIARTaHPVAVRSMVRSLRLGTDGGGGGGGGGslgdclykdAHAQAMCYNRRDWGEGLRAAKTRTDPVFE 381
                 333333333444555555554.489*******************433334455555555555666666667889879*************************987533789*********9.789***********9733357899***************************************9762699***9*********998887775511122111134555556666666666666666666665 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.1   6.2e-23   2.8e-20       9     212 ..     108     325 ..     101     334 .. 0.75

  Alignments for each domain:
  == domain 1    score: 70.0 bits;  conditional E-value: 6.2e-23
   TIGR02440   9 dniailtidvpgeklntlkaefadqvaeilkqlk..........ekkelrglvlvsgkpdsfiagadismlaack...tadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvg...vskaldmiltgkqlrakqalklglvddvvpksilldvavelakkgklkrkalslqer 212
                 ++i+i+t+  p e  n+l  e++ + ++++++l+          ++k++  +vl    + +f ag d++ l +        +  a+ +  ++ l   + +p++v+ a+hg+ +g g  lalac  rv +  d+ +lg+p  +lg+  g g    l + vg    ++a +++l g+ l   +a++lglv+  v ++ + d a +la +  +++++ +++  
  MMETSP1061-20121228|4545_1 108 KTIGIITLKSP-ESYNALTVEMGREFQSLVSRLEaeltdaesnaDTKNIGAIVLCGEGDKAFSAGGDLRWLHSLSensVHANVDAMLRFYKSFLCVRDQIPVPVIGALHGPAVGAGACLALACDLRVAASGDRPILGFPFSRLGIPTGMGALH-LLQTVGklsSAEAAEILLLGRTLTGEEARDLGLVNRLVSRDTVKDEAKKLAFEIARTAHPVAVRSM 325
                 56777777766.5567777666665555554443111111111134556666666666678*******998775411134456677788999****************************************************877766655.55555532247899*************************************999988888777665 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0     1e-16   4.6e-14      21     197 ..     108     298 ..      89     321 .. 0.77

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 1e-16
   TIGR02441  21 gdvavvkidspnskvntlskelsaefkevldeletn..........eavksavlisskpgsfvaGadidmlkac...ktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlp...klvsvpaaldleltGkkikadrakklGlvdrlvd 197
                   + ++ ++sp+s  n+l+ e+  ef++ +  le++          +++ ++vl      +f aG d+  l++        +v+ + r  +  l   ++   p++ a++G  +G G  lalac+ r+a+   + +lg p   lG+  G G+   l    kl s   a ++ l G+ +  + a+ lGlv+rlv 
  MMETSP1061-20121228|4545_1 108 KTIGIITLKSPES-YNALTVEMGREFQSLVSRLEAEltdaesnadtKNIGAIVLCGEGDKAFSAGGDLRWLHSLsenSVHANVDAMLRFYKSFLCVRDQIPVPVIGALHGPAVGAGACLALACDLRVAASGDRPILGFPFSRLGIPTGMGALHLLQtvgKLSSA-EAAEILLLGRTLTGEEARDLGLVNRLVS 298
                 5566777777776.4677777777766666555432111111122245778888888999********998765111455678888899999999999****************************************************98666511155554.456999********************96 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   1.1e-14   4.9e-12      48     200 ..     151     309 ..     106     318 .. 0.79

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 1.1e-14
   TIGR02437  48 aqsdlkglllts.dkdafivGaditeflelfakp.eeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktak..iGlpetklGilpGfGGtvrlprl..iGadsaleiiaaGkevraedalkvglvdavvkaekleaaalql 200
                 +  ++ +++l   + +af  G d+  + +l  +  ++++++ l++  s +   +++pvp + a++G a+G G  + la+d+r+a++  +  +G+p  +lGi  G+G    l  +  + + +a ei+  G+    e+a  +glv+ +v+ + ++  a++l
  MMETSP1061-20121228|4545_1 151 DTKNIGAIVLCGeGDKAFSAGGDLRWLHSLSENSvHANVDAMLRFYKSFLCVRDQIPVPVIGALHGPAVGAGACLALACDLRVAASGDRpiLGFPFSRLGIPTGMGALHLLQTVgkLSSAEAAEILLLGRTLTGEEARDLGLVNRLVSRDTVKDEAKKL 309
                 33456677776515679******9887777654327899999999999999999*****************************997655448*********9999876555544334567799****************************99998875 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.3   2.6e-12   1.2e-09      30     207 ..     137     332 ..     132     335 .. 0.70

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2.6e-12
   TIGR03189  30 aalraalgealeaa...alravlldaegph.fsfga......svee.hmpdqcaamlkslhklviemldspvpilvavrgqclggglevaaagnllfaapdak..lgqpeiklgvfapaascllpervgkva...aedllysgrsidgaegariglvdavae.dpeaaalayfdehlakls.asslrfavraarlg 207
                 + l+a l++a ++a   ++ a++l  eg + fs g       s++e  +  +  aml+  ++++    + pvp++ a+ g  +g g  +a+a +l  aa + +  lg p  +lg+ +   +  l + vgk +   a ++l  gr+++g+e+  +glv+ ++  d  +   + +  ++a+ +   ++r  vr+ rlg
  MMETSP1061-20121228|4545_1 137 SRLEAELTDAESNAdtkNIGAIVLCGEGDKaFSAGGdlrwlhSLSEnSVHANVDAMLRFYKSFLCVRDQIPVPVIGALHGPAVGAGACLALACDLRVAASGDRpiLGFPFSRLGIPTGMGALHLLQTVGKLSsaeAAEILLLGRTLTGEEARDLGLVNRLVSrDTVKDEAKKLAFEIARTAhPVAVRSMVRSLRLG 332
                 556666666654441114567777777753377775222222343314566788999999999999999**************************99988753349*********99998888888888865211557999****************987642554444444444455443134567777777766 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.2e-08   1.9e-05      41     152 ..     113     235 ..     107     274 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 4.2e-08
   TIGR03200  41 iildnpkqynsyttdm.......vkaiilafrrassd...rdvaavvftavgdkafctggntkeyaeyyagnpqeyr.qymrlfndmvsailgcdkpvicrvngmrigggqeigmaadlsvaq 152
                 i+l+ p  yn+ t +m       v  + + + +a s+   +++ a+v+ + gdkaf +gg+ +   +   +  +      +r++ +++    +   pvi  + g  +g g  + +a+dl va 
  MMETSP1061-20121228|4545_1 113 ITLKSPESYNALTVEMgrefqslVSRLEAELTDAESNadtKNIGAIVLCGEGDKAFSAGGDLRWLHSLSENSVHANVdAMLRFYKSFLCVRDQIPVPVIGALHGPAVGAGACLALACDLRVAA 235
                 89999999***999993332222222334455554431237899******************9988887766665550555777777777788999***********************9985 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.2e-05     0.024      67     229 ..     155     316 ..     129     330 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.2e-05
   TIGR03222  67 vrvvvltsakdkvfcaGanikml.glsthahkvnfckftnetrngiedaseesglkflaavnGtaaGGGyelalacdeivlvddrssavslpevpllavlpGtGGltrvtdkrrvrrdladifctieeGvkGkrakewrlvdevvksskfdaavaeraaelaak 229
                 + ++vl    dk f aG +++ l +ls+ +   n   +      ++     +     + a++G a G G  lalacd  v +      + +p    l++  G G l  +    ++    a     +   + G+ a++  lv+ +v+++ ++++ ++ a e+a +
  MMETSP1061-20121228|4545_1 155 IGAIVLCGEGDKAFSAGGDLRWLhSLSENSVHANVDAMLRFY-KSFLCVRDQIPVPVIGALHGPAVGAGACLALACDLRVAASGDRPILGFPF-SRLGIPTGMGALHLLQTVGKLSSAEAAEILLLGRTLTGEEARDLGLVNRLVSRDTVKDEAKKLAFEIART 316
                 556777777777777777777662345555555554444333.3444455566678899******************9999988888899995.678*********99999999888777777789999*****************999999888888888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1698.26
//
Query:       MMETSP1061-20121228|4544_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 2591.15
//
Query:       MMETSP1061-20121228|4546_1  [L=930]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (930 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       296  (0.0721599); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 2922.62
//
Query:       MMETSP1061-20121228|4549_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 989.92
//
Query:       MMETSP1061-20121228|4547_1  [L=1146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-14   49.8   2.5    3.3e-14   49.8   1.8    3.8  4  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.6   2.8    0.0029        12      91     175 ..     273     353 ..     240     357 .. 0.72
   2 !   49.8   1.8     8e-18   3.3e-14     448     601 ..     562     724 ..     483     728 .. 0.76
   3 !    2.1   0.0     0.002       8.1     610     667 ..     782     845 ..     771     849 .. 0.71
   4 ?   -3.5   0.1     0.098     4e+02     727     752 ..     973     998 ..     972    1001 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0029
   TIGR02956  91 dklkaLeeldfnekllarl..eslvkdiidtlaqlgelvgekitlqaqlqeksrelkeaaeeieelsqsqvanastialaklskiYd 175
                  ++k L+e++ n+k +++   + +++++ d  +++ ++v+e+i+ q++l+ k++el e +e+ +    sq     + +l  +s +Yd
  MMETSP1061-20121228|4547_1 273 LQIKNLKEQQANQKKFDKEvtDAKAQSMLDMAELIAKYVKEEIQDQEELE-KTKELVERTERKKDFQGSQ-----SKVLLSVSDLYD 353
                 47899999999999998861155677899999999999999998887775.4566666666655544444.....344455555555 PP

  == domain 2    score: 49.8 bits;  conditional E-value: 8e-18
   TIGR02956 448 lnHakAraeAeeAnrAKSaFL..AtmSHEiRTPlnGvlG....TleLLad.....tkLtseqqkylqvinrSGesLldiLnDiLDySkiEaGhlsiserafdlskLledvlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvv 601
                 ++H++   e ++ + AK + L  A   HE+R  l  v+     T +L +d     ++L s+  ++l+  ++  +  l++Ln iLD Ski aG  + ++  fdl+ L+  +  +   +aq++g+++s+      p++   D+  +  ++ N+++Na+KFT  G v+
  MMETSP1061-20121228|4547_1 562 VEHKRLE-EEQQNSFAKAQALisAQVFHEVRNALSSVVAmsemTSSLQKDptvssKTLVSSVSEMLDQNKEVVNYSLNMLNNILDVSKIKAGSFETQKSFFDLQDLVRRATTMQLVKAQTRGVKMSFSPL-PEPQIAYSDEDIVVRIITNFISNAVKFTTAGAVQ 724
                 4454433.23344556666664478899999999999973444556655533333678899999999999999999**************************************************9866.6799***************************985 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.002
   TIGR02956 610 s.llfeVeDtGvGiaee....eqetlFkaftqaegrkksgG...TGLGLAiskrlveamdgelsve 667
                 + +++ V+DtG G+ +e     ++ lF++   a + k   G    G GL ++++l+e +d+e++++
  MMETSP1061-20121228|4547_1 782 RyMAVGVADTGPGLSREllqiAKAGLFNS--DASNSKMNSGaknSGFGLHLAHQLAETLDSEVNLT 845
                 347899********998322234557765..44455555552227****************99875 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 0.098
   TIGR02956 727 kvtlaesgksAlecleekaFDlallD 752
                 +v++a ++++Al++le + +Dl + D
  MMETSP1061-20121228|4547_1 973 SVSTACTAEDALRALETQDYDLFISD 998
                 6999*****************98877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       401  (0.0977572); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.12s 00:00:00.62 Elapsed: 00:00:00.55
# Mc/sec: 2750.17
//
Query:       MMETSP1061-20121228|4550_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 987.28
//
Query:       MMETSP1061-20121228|4543_1  [L=1254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-05   20.5   0.0       0.04    9.4   0.0    2.3  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   9.7e-06      0.04       9      43 ..     340     374 ..     338     381 .. 0.91
   2 !    8.5   0.0   1.8e-05     0.074     138     208 ..     467     532 ..     464     549 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 9.7e-06
   TIGR04121   9 argweprafQkevleaaeegesglliapTGaGKTl 43 
                 +r+ ++ a+Q ++l+a++++es+++ apT +GKT 
  MMETSP1061-20121228|4543_1 340 NRKLQLEAWQFDILQAIDNRESAVVCAPTSSGKTI 374
                 5788999***************************5 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 1.8e-05
   TIGR04121 138 fkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeek.eekaklvka 208
                 f++ + +v+DE+H L g   Gd l+  +    +   +  +++lsAT+gn  +++++ +   k + +a+l++a
  MMETSP1061-20121228|4543_1 467 FNQFDYLVLDEVHTLNGP-EGDALQRII----KAV-NSPMLALSATIGNAVQLKDWFASVLKeHMDATLIDA 532
                 889999********9887.588665443....332.235689**************9998774667777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       400  (0.0975134); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.14s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 3761.69
//
Query:       MMETSP1061-20121228|4548_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1038.0   3.0          0 1037.7   2.1    1.0  1  TIGR00484 EF-G: translation elongation factor G
    8.5e-99  329.4   2.8    3.8e-40  135.5   0.1    3.3  3  TIGR00490 aEF-2: translation elongation factor aEF-2
      4e-70  234.5   4.0    4.3e-37  125.4   0.0    3.3  3  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    1.6e-56  189.7   0.3    1.1e-28   97.8   0.0    3.6  3  TIGR01393 lepA: GTP-binding protein LepA
    7.1e-55  184.2   2.2    2.7e-54  182.3   1.1    2.2  2  TIGR00503 prfC: peptide chain release factor 3
    5.6e-34  115.1   0.0    1.1e-33  114.2   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.1e-14   51.6   1.2    3.5e-12   43.3   0.1    2.4  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    2.6e-14   50.6   1.6    4.7e-14   49.7   0.0    2.2  4  TIGR00485 EF-Tu: translation elongation factor Tu
    3.2e-12   43.8   1.1    1.1e-11   42.0   0.2    2.2  2  TIGR00487 IF-2: translation initiation factor IF-2
    7.7e-11   39.2   0.4    1.4e-09   35.0   0.0    2.1  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    5.1e-07   26.9   0.4    0.00028   17.9   0.0    2.3  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    1.6e-06   24.6   0.2    1.8e-05   21.2   0.0    2.2  2  TIGR00491 aIF-2: translation initiation factor aIF-2
     0.0032   14.6   0.2     0.0084   13.2   0.1    1.6  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
  ------ inclusion threshold ------
      0.012   12.5   0.0      0.065   10.0   0.0    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1037.7   2.1         0         0       3     687 ..      54     752 ..      52     755 .. 0.97

  Alignments for each domain:
  == domain 1    score: 1037.7 bits;  conditional E-value: 0
   TIGR00484   3 rtvdleklrniGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlksrldvnavplqlpiGaedkfeGvidlvkkkayffe.edkgekaee......keiP...edlkeeakelreklveavaeldeelmekyleGeeltieeikkairkgvlalelvpvlvGsafknkGvqllldavvdylPsPvdvkaikaidedtekeielkasddepfvalafkvatdpfvgkltfvrvysGvlksGsevlnsrkekkervgrlvkmhankreeieevraGdiaaliGlkdtttGdtlcdekaevilesmefpePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefkvevnvGkPqvayretirkkaevegkyakqsGGrGqyGhvvielePlee.....gkgyefvneikGGviPreyipavdkGleealesGvlaGyPvvdikvtlfdGsyhdvdsselafklaaslalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegseeresvkvvkaevPlsemfGyatdlrsatqGraeysmeflkyaevPksvaeeiie 687
                 r+vdl+ +rniGi+ahidaGktttteril+ytgk++kigevh+G atmdwmeqe+erGititsaatt+ wkd+rin+idtPGhvdft+everslrvldGavav+d vaGvepq+etvwrqa+ky+vPr+ f+nkmd++Ganf+  v+++ + l++ +  lqlpiG+e +f Gvidlv++ a+++  ed g+++++      ++iP   ++lk++a+e++eklve ++e+de+++ +yleGe  ++e++k+ irkg+l+l++vpvl G+afknkGvq lldavvdy+PsP dv ai +++ed  +++e+k+sd ep++alafkva+dpfvg ltf rvysGv++ G  v+ns+k k+er+gr+++mhan+r ei+   aGdi+a++GlkdtttG+tlcd++++vile+mefpePvi++avePktk dq+km+ al +la edP+f+   dee+gqtii+GmGelhl+iivdr+kref+ve  vG+Pqv+yre+i+ +ae++++++kqsGG Gqy +++  +eP+e      +  +efv +ikGG +Preyip v+kG+e  l +Gv+aG+Pv+ +k+tl dG yhdvdss +af++a+  a +e+ +kak  l+eP+m+v+v++Peey+GdvlGd++ rrg++    er++vk+++a+vPl++mf y ++lrs+++Gra+ysm++ +y+ vP ++ ee+ +
  MMETSP1061-20121228|4548_1  54 REVDLDLYRNIGIMAHIDAGKTTTTERILYYTGKSYKIGEVHEGGATMDWMEQEQERGITITSAATTCAWKDYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQTETVWRQADKYKVPRMCFLNKMDRTGANFYFCVDTIVELLGATPAVLQLPIGTESDFLGVIDLVTMEAIVWRgEDLGASFDViplaecNDIPlvdDELKAKAEEYHEKLVEIAVEQDEDVLMEYLEGEMPSVETLKRLIRKGTLNLDVVPVLTGTAFKNKGVQPLLDAVVDYMPSPLDVLAIAGVTED-GEPTERKSSDAEPMSALAFKVANDPFVGTLTFTRVYSGVMEAGTSVYNSVKGKNERIGRMLQMHANDRTEIKSAVAGDIVAIVGLKDTTTGETLCDKDNAVILEKMEFPEPVIKVAVEPKTKGDQQKMSEALIRLAAEDPSFRFSRDEETGQTIIEGMGELHLEIIVDRMKREFNVECTVGAPQVSYREAITATAEIDYTHKKQSGGSGQYARIKLIFEPKEFsdeegSMDFEFVSDIKGGSVPREYIPGVQKGIESVLGTGVVAGFPVLGMKATLVDGAYHDVDSSVMAFEIAGRAATREGLRKAKARLMEPLMQVDVSTPEEYMGDVLGDINARRGMVGDLGERGNVKTISAQVPLANMFQYVSTLRSMSKGRANYSMKLANYDFVPPNIEEELKK 752
                 99**************************************************************************************************************************************************************************************97888988754222222788866679*******************************************************************************************.899*************************************************************************************************************************************************************************************************************************97444456678******************************************************************************************************************************************************************99976 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.0     2e-37   5.9e-35      11     151 ..      53     191 ..      44     204 .. 0.88
   2 !  135.5   0.1   1.3e-42   3.8e-40     244     475 ..     329     551 ..     320     578 .. 0.86
   3 !   73.9   0.0   5.6e-24   1.6e-21     561     709 ..     606     752 ..     588     756 .. 0.93

  Alignments for each domain:
  == domain 1    score: 118.3 bits;  conditional E-value: 2e-37
   TIGR00490  11 elmekpefirnigivahidhgkttlsdnllagagm..iseelageqlfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrl 151
                 +     +  rnigi+ahid gktt ++ +l  +g      e+      +d+ eqeqergiti++a  +       ++y in+idtpghvdf  +v r++r +dga+ v + v gv pqtetv rqa k +v  + f+nk+dr 
  MMETSP1061-20121228|4548_1  53 QREVDLDLYRNIGIMAHIDAGKTTTTERILYYTGKsyKIGEVHEGGATMDWMEQEQERGITITSAATTC----AWKDYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQTETVWRQADKYKVPRMCFLNKMDRT 191
                 555567899********************9766651145588888899**************9998765....568*****************************************************************96 PP

  == domain 2    score: 135.5 bits;  conditional E-value: 1.3e-42
   TIGR00490 244 qvvldmvikhlpspaeaqkyriaviwkgdlnseagkamlncdpegplavvitkivvdkhagevavgrlysgaikkgsevylvdskakariqqvgvymgpervevdeipagnivavvglkeavageticstdkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirekagvevetsepivvyretvtgtspv 475
                 q +ld v+ ++psp +  +  ia + +      +  +  ++    p++++  k+  d+  g ++ +r+ysg ++ g+ vy   + + +ri ++  +   +r e+ +  ag+iva+vglk++++get+c+ d+ +  +e ++ + epv+ va+e k   d  k+ e l ++a edp+ +   +eetg+ +i gmgelhleiiv++++++++ve  ++ p v yre++t t+ +
  MMETSP1061-20121228|4548_1 329 QPLLDAVVDYMPSPLDVLA--IAGVTE----DGEP-TERKSSDAEPMSALAFKVANDPFVGTLTFTRVYSGVMEAGTSVYNSVKGKNERIGRMLQMHANDRTEIKSAVAGDIVAIVGLKDTTTGETLCDKDNAV-ILEKME-FPEPVIKVAVEPKTKGDQQKMSEALIRLAAEDPSFRFSRDEETGQTIIEGMGELHLEIIVDRMKREFNVECTVGAPQVSYREAITATAEI 551
                 6678888888888887643..443322....2222.22234445688999999***************************99999999***99999999******************************99877.578876.79***********************************************************************************99875 PP

  == domain 3    score: 73.9 bits;  conditional E-value: 5.6e-24
   TIGR00490 561 legfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqilemkqegdmvtikakvpvaemfgfagairgategralwstefagfekvprelqeelvk 709
                  +g+++ + +g va  +v+g+k  lvd   h+  v         a r + ++ l +a+  l+epl +v +++p+++mg ++ +i++rrg + ++ + g++ ti a+vp+a+mf +  ++r+ ++gra +s++ a ++ vp ++ eel k
  MMETSP1061-20121228|4548_1 606 QKGIESVLGTGVVAGFPVLGMKATLVDGAYHD--VDSSVMAFEIAGRAATREGLRKAKARLMEPLMQVDVSTPEEYMGDVLGDINARRGMVGDLGERGNVKTISAQVPLANMFQYVSTLRSMSKGRANYSMKLANYDFVPPNIEEELKK 752
                 579999***********************997..555666666799*************************************************************************************************999865 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   0.0   1.5e-39   4.3e-37       1     146 [.      61     208 ..      61     249 .. 0.93
   2 !   85.9   0.6   1.3e-27   3.9e-25     194     388 ..     361     544 ..     306     552 .. 0.85
   3 !   22.2   0.0   2.6e-08   7.6e-06     386     485 ..     658     757 ..     653     760 .] 0.88

  Alignments for each domain:
  == domain 1    score: 125.4 bits;  conditional E-value: 1.5e-39
   TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlrekeevee..rvmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfve 146
                 +rni i+ah+D Gktt  +++L  +g   +  ev+e    mD  + e+erGiti + +t+ ++kd++ini+DtPGh Df  ever l ++dg++ + D + G+ pqt  v ++a +++   +  +nk+Dr+ a+    vd++ +L+ +
  MMETSP1061-20121228|4548_1  61 YRNIGIMAHIDAGKTTTTERILYYTGKSYKIGEVHEggATMDWMEQEQERGITITSAATTCAWKDYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQTETVWRQADKYKVPRMCFLNKMDRTGANFYFCVDTIVELLGA 208
                 59***********************999998888874569********************************************************************************************************9754 PP

  == domain 2    score: 85.9 bits;  conditional E-value: 1.3e-27
   TIGR01394 194 kadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdivavaGledieigetiadaeeaealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrre.GfelsvskPkvivkei 388
                 k ++ ep+++l  ++ +d ++G ++ +rv++G++ +g++v       k ++ ri ++l++++ +r+ei++a aGdiva++Gl+d++ get++d+++a  l+ ++  eP +++ ++  +    G +      +k+++ L r + ++ ++r +  ee+ +  ++G GeLhl i+++ m+re   e +v+ P+v ++e 
  MMETSP1061-20121228|4548_1 361 KSSDAEPMSALAFKVANDPFVGTLTFTRVYSGVMEAGTSVYNSV---KGKNERIGRMLQMHANDRTEIKSAVAGDIVAIVGLKDTTTGETLCDKDNAVILEKMEFPEPVIKVAVEPKTK---GDQ------QKMSEALIRLAAEDPSFRFSRDEETGQTIIEGMGELHLEIIVDRMKREfNVECTVGAPQVSYREA 544
                 4456789******************************9997654...45789***********************************************************99987653...333......445666666677799*********************************5589*********9985 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 2.6e-08
   TIGR01394 386 keidgkklePieeltidvpeefvgavieklgkrkgelkdmeskgsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplkgeiekr.kkGslvs 485
                 ++ + + +eP+ ++ + +pee++g v+  + +r+g + d+ ++g+    ++ ++P   ++ + +++ ++++G +  +    +y+ +  +ie+  kkG  vs
  MMETSP1061-20121228|4548_1 658 RKAKARLMEPLMQVDVSTPEEYMGDVLGDINARRGMVGDLGERGN-VKTISAQVPLANMFQYVSTLRSMSKGRANYSMKLANYDFVPPNIEEElKKGFSVS 757
                 6678899*************************************9.566999**********************999999999988877765425566555 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.8   0.0   3.7e-31   1.1e-28       3     153 ..      61     209 ..      59     233 .. 0.92
   2 !   64.1   0.1   5.9e-21   1.7e-18     183     385 ..     361     555 ..     277     575 .. 0.77
   3 !   23.2   0.0   1.5e-08   4.3e-06     395     475 ..     661     739 ..     644     743 .. 0.90

  Alignments for each domain:
  == domain 1    score: 97.8 bits;  conditional E-value: 3.7e-31
   TIGR01393   3 irnfsiiahidhGkstladrllektka...vserelkeqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieeviGld 153
                  rn+ i+ahid Gk+t ++r+l +t+    + e +    ++d ++ e+erGiti + a +  +k     +y +n+idtPGhvdf+ ev rsl   +Ga+ + d + Gve qt +    a + ++  +  +nk+d   a+     + i e++G  
  MMETSP1061-20121228|4548_1  61 YRNIGIMAHIDAGKTTTTERILYYTGKsykIGEVHEGGATMDWMEQEQERGITITSAATTCAWK-----DYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQTETVWRQADKYKVPRMCFLNKMDRTGANFYFCVDTIVELLGAT 209
                 59********************99974222777777889************************5.....6******************************************988888888899999***************999999999975 PP

  == domain 2    score: 64.1 bits;  conditional E-value: 5.9e-21
   TIGR01393 183 kgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpklvkeeelkaGevGyliagikdvkdvkvGdtitsvkkpakealpGfkkvkpvvfaglyPidsedyeelrdaleklklndasltyekesskalGfGfrcGflGllhleviqerlerefdldliataPsvvykvklkdgevieven 385
                 k+++ +p+ al f    d++ G +++ rv++G +++g  +    +gk+ ++ ++  ++  +++++e+k+   G ++a i  +kd+  G+t+ + ++ +   l+  +  +pv+  ++ P  + d +++ +al +l+ +d s+ + ++  +  G  +  G +G lhle+i +r++ref+++  + aP+v+y+   +   +i  ++
  MMETSP1061-20121228|4548_1 361 KSSDAEPMSALAFKVANDPFVGTLTFTRVYSGVMEAGTSVYNSVKGKNERIGRMLQMH--ANDRTEIKSAVAGDIVA-IVGLKDTTTGETLCDKDNAV--ILEKMEFPEPVIKVAVEPKTKGDQQKMSEALIRLAAEDPSFRFSRDEET--GQTIIEG-MGELHLEIIVDRMKREFNVECTVGAPQVSYREAITATAEIDYTH 555
                 34455899********************************999999998887765444..45555677777777665.668999******98887766..567777789**********************************987654..6666555.7*****************************98777766665544 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 1.5e-08
   TIGR01393 395 ieeveePyvkatiivpeeylgailelcqekrgvlkkleyldkervelvyelPlaeivldffdklksiskGyasldyeliey 475
                  +++ eP +++ + +peey+g +l  ++ +rg++ +l   + +  +++ ++Pla+ ++++   l+s+skG a +  +l++y
  MMETSP1061-20121228|4548_1 661 KARLMEPLMQVDVSTPEEYMGDVLGDINARRGMVGDLGERG-NVKTISAQVPLAN-MFQYVSTLRSMSKGRANYSMKLANY 739
                 56789********************************9988.577899******9.589*************999888877 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.3   1.1   9.2e-57   2.7e-54       9     467 ..      59     540 ..      50     559 .. 0.81
   2 ?   -2.1   0.0      0.69     2e+02     215     215 ..     671     671 ..     609     716 .. 0.58

  Alignments for each domain:
  == domain 1    score: 182.3 bits;  conditional E-value: 9.2e-57
   TIGR00503   9 dkrrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplelldevenelkintaaitypiGtGklfkGvyhllkdeiylye.sGkgstikavrvvkalddpeldaav...Gedlaqel......rde...lelveea..saefdkeavlaG....eltpvffGtalgnfGvdllldallqyaakpeardsdtrtv...eaae......ekfsGfvfklqanmdpkhrdrvaflrvvsGkyekdmklkhvrtgkdvvlsdalkllagdresveeayaGdiiGlhnhGtiqiGdtvtqGeklkftgipnf.apelfrrlrlkdplkqkqllkGlvelseeGav.qvlrsldendlivaavGvlqfdvvvarlkeeynveavyesvnva 467
                 d  r++ i++h daGktt te++l y +   + G v+       a+ dwme e++rGi+it++     ++d  +n++dtpGh df+ +  r+l   d a+ v d   Gve +t  +   +   ++p + flnk+dr   +    +d + + l+ + a ++ piGt   f Gv +l++ e  +++    g++   + +  + d p +d  +    e+  ++l      +de   +e +e+   s e  k ++ +G    ++ pv+ Gta++n Gv+ llda+++y + p    +  +     e++e      e +s + fk+    dp     ++f rv sG  e +  + +   gk+ ++ + l++ a+dr++++ a aGdi+ +      + G+t+ + ++ +     +f  p +   +  k    q+++   l++l  e    +  r  +  + i+  +G l ++++v r+k e+nve+ + + +v+
  MMETSP1061-20121228|4548_1  59 DLYRNIGIMAHIDAGKTTTTERILYYTGKSYKIGEVHEG----GATMDWMEQEQERGITITSAATTCAWKDYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQTETVWRQADKYKVPRMCFLNKMDRTGANFYFCVDTIVELLGATPAVLQLPIGTESDFLGVIDLVTMEAIVWRgEDLGASFDVIPLAECNDIPLVDDELkakAEEYHEKLveiaveQDEdvlMEYLEGEmpSVETLKRLIRKGtlnlDVVPVLTGTAFKNKGVQPLLDAVVDYMPSPLDVLAIAGVTedgEPTErkssdaEPMSALAFKVA--NDP-FVGTLTFTRVYSGVMEAGTSVYNSVKGKNERIGRMLQMHANDRTEIKSAVAGDIVAIVGLKDTTTGETLCDKDNAVILEKMEFpEPVIKVAVEPKTKGDQQKMSEALIRLAAEDPSfRFSRDEETGQTIIEGMGELHLEIIVDRMKREFNVECTVGAPQVS 540
                 5679******************************99865....5899****************************************************************************************************************************************955566677766666665555444333111222222221222224442224555553226666788888883333468***************************8655544433111444411111255788999984..378.56789**************************************************9999999999***9877665555555551677777788888899999********87765505555555669*************************987766665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.69
   TIGR00503 215 a 215
                 +
  MMETSP1061-20121228|4548_1 671 V 671
                 2 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.0   3.7e-36   1.1e-33       4     162 ..      62     230 ..      59     232 .. 0.95

  Alignments for each domain:
  == domain 1    score: 114.2 bits;  conditional E-value: 3.7e-36
   TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskp...gvtrdyvteqieedGkt............ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktkvkslfaklnaep.iielsaetgknidklfklv 162
                 ++i+i++h+d+GK+t+++++l++++   ++++   g   ++++eq++e+G+t            y++n++DT+G++df       + eversl+v+d++++v d   g+e+qt++++++a+k++vp++ ++nK+D  + ++  +v ++++ l+a p + +l++ t++ ++++++lv
  MMETSP1061-20121228|4548_1  62 RNIGIMAHIDAGKTTTTERILYYTGKSYKIGEvheGGATMDWMEQEQERGITitsaattcawkdYRINIIDTPGHVDF-------TLEVERSLRVLDGAVAVFDGVAGVEPQTETVWRQADKYKVPRMCFLNKMDRTGaNFYFCVDTIVELLGATPaVLQLPIGTESDFLGVIDLV 230
                 79*******************999877666666668888999999*********************************.......***********************************************************************99*************99987 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.1   1.2e-14   3.5e-12       9     153 ..      63     190 ..      55     197 .. 0.86
   2 !    6.4   0.1    0.0019      0.56     240     314 ..     380     454 ..     302     471 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 1.2e-14
   TIGR00483   9 nvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmds 153
                 n+ ++ h+d+gk+t++ r+ly +g+    ++     e +e g         +d +++e+erg+ti  a +    + y++ i+d+pgh df  ++       d av v ++  g   v+pqt      a    + ++   +nkmd+
  MMETSP1061-20121228|4548_1  63 NIGIMAHIDAGKTTTTERILYYTGKSY--KIG----EVHEGG-------ATMDWMEQEQERGITITSAATTCAWKDYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAG---VEPQTETVWRQADKYKVPRMC-FLNKMDR 190
                 8999********************754..455....444443.......258999******************************************************9998...99**98877777777777765.5788886 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0019
   TIGR00483 240 gvgtvpvgrvetgvlkkgekvvfepagvsgev.ksiemhhe...qieqaepgdnigfnvrgvskkdirrgdvagdadnp 314
                  vgt+   rv +gv+  g+ v     g    + + ++mh +   +i+ a+ gd +      v+ kd   g+   d+dn 
  MMETSP1061-20121228|4548_1 380 FVGTLTFTRVYSGVMEAGTSVYNSVKGKNERIgRMLQMHANdrtEIKSAVAGDIVA----IVGLKDTTTGETLCDKDNA 454
                 59*******************99999999988456899975222688888888654....5888888888888888885 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.6e-16   4.7e-14      13     141 ..      62     191 ..      51     206 .. 0.91
   2 ?   -3.6   0.0       2.6   7.5e+02     163     203 ..     310     342 ..     287     344 .. 0.63
   3 ?   -4.0   0.0       3.4   9.8e+02     236     252 ..     427     443 ..     419     446 .. 0.71
   4 ?   -2.4   0.0       1.1   3.3e+02     349     387 ..     472     511 ..     466     514 .. 0.80

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 1.6e-16
   TIGR00485  13 vnvgtighvdhgkttltaaittvlakegk.aaakk.ydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlv 141
                  n+g + h+d gktt t  i     k++k +++++    +d   +e++rgiti++a      ++     +d pgh d+  ++      +dga+ v  +  g+ pqt      a +  vp++ +flnk+d  
  MMETSP1061-20121228|4548_1  62 RNIGIMAHIDAGKTTTTERILYYTGKSYKiGEVHEgGATMDWMEQEQERGITITSAATTCAWKDYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQTETVWRQADKYKVPRM-CFLNKMDRT 191
                 59******************99988888755554415789*******************99999999****************************************************97.8*****975 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.6
   TIGR00485 163 fpgddvpivrgsalkalegdaeweekilelmeavdeyiptp 203
                 ++ d vp+++g+a+k        ++ ++ l++av +y+p+p
  MMETSP1061-20121228|4548_1 310 LNLDVVPVLTGTAFK--------NKGVQPLLDAVVDYMPSP 342
                 555555555555554........344556666666666665 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 3.4
   TIGR00485 236 evkvgeeveivglketk 252
                     g+ v ivglk+t+
  MMETSP1061-20121228|4548_1 427 SAVAGDIVAIVGLKDTT 443
                 44568999999999986 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 1.1
   TIGR00485 349 emvlpgdnvkltvelispvaleeglrfair.eggrtvgag 387
                 e    gd+ k++  li   a +   rf+   e g+t+  g
  MMETSP1061-20121228|4548_1 472 EPKTKGDQQKMSEALIRLAAEDPSFRFSRDeETGQTIIEG 511
                 555679************9999*****9752679998665 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.2   3.8e-14   1.1e-11      90     204 ..      64     195 ..      29     211 .. 0.77
   2 ?   -1.5   0.0      0.58   1.7e+02     284     331 ..     390     442 ..     360     454 .. 0.73

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 3.8e-14
   TIGR00487  90 vtimGhvDhGktsLLdsi.....rktkvaegeaGGit.......qh......iGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpeanp 204
                 + im h+D Gkt+  + i     ++ k+ e   GG t       q+        a +   +d   i  +DtPGh  ft    r  +v D +v v     Gv+pqt+     a + +vP + ++nk+D+  an 
  MMETSP1061-20121228|4548_1  64 IGIMAHIDAGKTTTTERIlyytgKSYKIGEVHEGGATmdwmeqeQErgititSAATTCAWKDY-RINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQTETVWRQADKYKVPRMCFLNKMDRTGANF 195
                 7899*******9987777555556778887777776633333222211110034445554554.8***************************************************************99985 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.58
   TIGR00487 284 qeGtLkvGDivvv.....gaayGkvramidekGksvkeagPsiaveilGlsev 331
                  +G ++ G +v       +   G++  m+ +  +++k+a     v i+Gl++ 
  MMETSP1061-20121228|4548_1 390 YSGVMEAGTSVYNsvkgkNERIGRMLQMHANDRTEIKSAVAGDIVAIVGLKDT 442
                 55555555555331111134689999999999999999999999999999885 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   4.9e-12   1.4e-09       2     117 ..      63     192 ..      62     205 .. 0.89
   2 ?    2.1   0.1     0.045        13     190     241 ..     381     436 ..     371     460 .. 0.78

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 4.9e-12
   TIGR00475   2 iiataGHvDHGKttLlkal...tgid............adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvd 117
                 +i+++ H+D GKtt    +   tg +             d + +E+ RG+ti    +    +d+++++iD PGH  f  ++  ++  +d+a+ v d   Gv +qt+   + +++ +++  +  l+K+Dr+ 
  MMETSP1061-20121228|4548_1  63 NIGIMAHIDAGKTTTTERIlyyTGKSykigevheggatMDWMEQEQERGITITSAATTCAWKDYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQTETVWRQADKYKVP-RMCFLNKMDRTG 192
                 588999******9988776444666677888889998455677889************************************************************************.7899******86 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.045
   TIGR00475 190 aGtvvtGtafsGevkvgDelvlepinkkvrv...kalqaq.nqsvekavAGqRial 241
                 +Gt     ++sG ++ g +++ +  +k+ r+    +++a  +++ + avAG+ +a+
  MMETSP1061-20121228|4548_1 381 VGTLTFTRVYSGVMEAGTSVYNSVKGKNERIgrmLQMHANdRTEIKSAVAGDIVAI 436
                 5777777899**********988777777773114556542578999*****9996 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   9.5e-07   0.00028      55     122 ..     101     168 ..      70     193 .. 0.91
   2 !    7.0   0.0    0.0019      0.56     239     324 ..     389     477 ..     376     498 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 9.5e-07
   TIGR02034  55 vdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtr 122
                 +d ++ e+e+giti  a    + +  +  + dtPGh+ +t ++  +    d av + d   Gv  qt 
  MMETSP1061-20121228|4548_1 101 MDWMEQEQERGITITSAATTCAWKDYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQTE 168
                 8999***************999999999999***********************************96 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0019
   TIGR02034 239 iasGsvkvGdevvvlpsgresrvarivtfd....gelekaeaGeavtlvledeidisrGdllaaadeapev.adqfaaelvwladeallpG 324
                 + sG ++ G +v+   +g++ r+ r+++++     e+++a+aG+ v++v  +  d + G+ l ++d+a      +f   ++ +a e+ + G
  MMETSP1061-20121228|4548_1 389 VYSGVMEAGTSVYNSVKGKNERIGRMLQMHandrTEIKSAVAGDIVAIVGLK--DTTTGETLCDKDNAVILeKMEFPEPVIKVAVEPKTKG 477
                 789**********************99875222247899*****99887433..5678888888887654313456666666665555555 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0     6e-08   1.8e-05       9     133 ..      66     190 ..      62     194 .. 0.76
   2 ?    0.6   0.1       0.1        30     486     548 ..     388     455 ..     372     490 .. 0.68

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 6e-08
   TIGR00491   9 vlGhvdhGkttlldkirktrvakreaGgitqhiGaseiPidvikrlcgdllk.klkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
                 ++ h+d Gktt  ++i      +   G++  + Ga+   ++  ++    +         k   + +idtPGh  ft    r   + d a+ v d + G++pqt+       ++k+P +   nk+dr
  MMETSP1061-20121228|4548_1  66 IMAHIDAGKTTTTERILYYTGKSYKIGEVH-EGGATMDWMEQEQERGITITSaATTCAWKDYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGVEPQTETVWRQADKYKVPRMCFLNKMDR 190
                 677888888888888877776666777664.44666544444333333333202334445556779***********************************************************8 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.1
   TIGR00491 486 evlaGvlrvgapl...ikedGekvGevreikdrg.envkeakagkavsia.iddrvvlkrkv.degdel 548
                 +v +Gv+  g+++   +k   e++G + +++ ++  ++k+a ag+ v+i  ++d  + + ++ d+++ +
  MMETSP1061-20121228|4548_1 388 RVYSGVMEAGTSVynsVKGKNERIGRMLQMHANDrTEIKSAVAGDIVAIVgLKD-TTTGETLcDKDNAV 455
                 67788888775542226778899*******9765168**********9863666.45554441555444 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   2.9e-05    0.0084       7     125 ..      63     169 ..      59     189 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.9e-05
   TIGR03680   7 niglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtke 125
                 nig++ h+D Gktt+++ +     + ++        ++ G a +  ++ e+   ++ +t ++ +++c        ++ ++D+PGh  +   +     ++dga+ v +    v +pqt+ 
  MMETSP1061-20121228|4548_1  63 NIGIMAHIDAGKTTTTERILYYTGKSYK-----IGEVHEGGATMDWMEQEQ---ERGITITSAATTCA---WKDYRINIIDTPGHVDFTLEVERSLRVLDGAVAVFDGVAGV-EPQTET 169
                 8***************998644433332.....223455556555555544...45677777777777...345689*********99999999999*********999999.899875 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00022     0.065      31     123 ..     109     193 ..     106     206 .. 0.79
   2 ?   -1.5   0.0      0.69     2e+02     307     344 ..     300     337 ..     291     352 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00022
   TIGR03594  31 tpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnkke 123
                 + g+T     +++ +k+ ++++iDT+G          + + ++e +++  d  + v+d+ +g++++ e++ +   k+k p +  +NK+d++ +
  MMETSP1061-20121228|4548_1 109 ERGITITSAATTCAWKDYRINIIDTPGHV--------DFTLEVERSLRVLDGAVAVFDGVAGVEPQTETVWRQADKYKVPRMCFLNKMDRTGA 193
                 56788888888999999999999999983........33444566667778888889999999999999999999999999999999998755 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.69
   TIGR03594 307 elkkeleeklkflkfapivfiSAltgkgveklleaike 344
                 +lk+ +++    l+ +p+++  A ++kgv+ ll+a+ +
  MMETSP1061-20121228|4548_1 300 TLKRLIRKGTLNLDVVPVLTGTAFKNKGVQPLLDAVVD 337
                 56666666666777777777777777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.61u 0.16s 00:00:00.77 Elapsed: 00:00:00.51
# Mc/sec: 1966.90
//
Query:       MMETSP1061-20121228|4552_1  [L=2195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.96u 0.13s 00:00:01.08 Elapsed: 00:00:00.56
# Mc/sec: 5082.74
//
Query:       MMETSP1061-20121228|4555_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 626.95
//
Query:       MMETSP1061-20121228|4556_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-57  192.7   0.2    2.6e-57  192.5   0.1    1.0  1  TIGR03356 BGL: beta-galactosidase
    6.3e-27   92.4   0.1    3.2e-26   90.0   0.0    1.9  1  TIGR01233 lacG: 6-phospho-beta-galactosidase


Domain annotation for each model (and alignments):
>> TIGR03356  BGL: beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.5   0.1   1.3e-60   2.6e-57     226     427 .]       8     219 ..       2     219 .. 0.90

  Alignments for each domain:
  == domain 1    score: 192.5 bits;  conditional E-value: 1.3e-60
   TIGR03356 226 dseedvaaaeladallnrlfldpllkgeypeellekl.eklpkveegdletiaqplDflginyYtrevvkadeeeel.........eeaeveekvektemgWevapegltdlllrlkeeykklpiyitEnGaaledeveegeveDeeRiaylkehleavkraieeGvdvkgyfvWsllDnfEWaeGyskRFGlvyvdyetqkRtlKesakwy 427
                 +s++d++aae+a  ++ ++ +dpl+ geypee+  +l e+lp++++ + ++i+  +Df+g+n+Y+  + +  +ee++          + +v+ + +k +mgW+ +p+g ++ll +++++y+ +p++itEnG++ ed++ e   +De R ++++ +++a+ +aie Gv+++gyf+Wsl+DnfEW++Gy+kRFG+ yvdyet++Rt+K+sa wy
  MMETSP1061-20121228|4556_1   8 ESPQDRDAAERAMVFQYAWLTDPLVFGEYPEEMRIRLgERLPQFTDAQRQEITDSVDFMGLNHYSTLYASGRKEEQVyggywadmdVDFSVDPSWSKNSMGWSTNPDGCRELLYWISRRYPGIPVVITENGTSEEDRTLEEAQHDEARRQFFEGYIRACGEAIEMGVELEGYFAWSLMDNFEWEYGYTKRFGICYVDYETLERTPKSSALWY 219
                 789*****************************976552789************************998887666554222121111344567788999*****************************************************************************************************************9 PP

>> TIGR01233  lacG: 6-phospho-beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.0   1.6e-29   3.2e-26     220     465 ..       2     222 ..       1     226 [. 0.83

  Alignments for each domain:
  == domain 1    score: 90.0 bits;  conditional E-value: 1.6e-29
   TIGR01233 220 kypyd.esavdvraaeledilenklildatllgeysdktlelvkeildenhqgeldlrdeelkaldeakdlldflgvnyylsdwlraydgkseiihngdgekgsskarlkgvgeeklpdyvertdwdwiiypeglydilmrvkndyplvkkiyvtenglglkeelvenatpdtvveddkridyvkkylevladaiadganvkgyfiwslqdvfswsngyekryglfyvdfdtqeryikksaewykkl 465
                 +yp + es+ d  aae   +++   + d  + gey ++    + e l +        +d + +   e +d  df+g+n+y +  l a   k e ++ g             v   + p    +    w+  p+g  + l  +   yp ++++ +teng    +   e+     + +d+ r ++   y+ +  +ai+ g ++ gyf wsl+d f w  gy kr+g+ yvd++t er +k sa wy++ 
  MMETSP1061-20121228|4556_1   2 RYPLNpESPQDRDAAERAMVFQYAWLTDPLVFGEYPEEMRIRLGERLPQF-------TDAQRQ---EITDSVDFMGLNHYST--LYASGRKEEQVYGGYWADM-------DVDFSVDPSW-SKNSMGWSTNPDGCRELLYWISRRYPGIPVV-ITENGTSEEDRTLEE-----AQHDEARRQFFEGYIRACGEAIEMGVELEGYFAWSLMDNFEWEYGYTKRFGICYVDYETLERTPKSSALWYRET 222
                 68988899999999999999999999999999999988655544444333.......333333...4467899999999965..5676777888887765443.......3555566655.567789**********************986.9*****999998888.....67899******************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1303.39
//
Query:       MMETSP1061-20121228|4553_1  [L=1538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.13s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 4951.20
//
Query:       MMETSP1061-20121228|4557_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|4554_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.22
# Mc/sec: 2621.78
//
Query:       MMETSP1061-20121228|4551_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-103  345.0  30.3   1.3e-103  344.8  21.0    1.1  1  TIGR00886 2A0108: nitrite transporter
    4.9e-14   49.9  26.5    6.8e-14   49.4  18.4    1.2  1  TIGR00893 2A0114: D-galactonate transporter
      2e-08   31.5   4.9      2e-08   31.5   3.4    2.0  2  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    2.9e-08   31.0  22.0      5e-08   30.2  14.8    1.8  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    1.9e-06   24.9   2.6    1.9e-06   24.9   1.8    2.3  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
      0.007   14.2   1.0      0.007   14.2   0.7    2.6  3  TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family


Domain annotation for each model (and alignments):
>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.8  21.0  1.9e-106  1.3e-103       1     368 []      45     407 ..      45     407 .. 0.93

  Alignments for each domain:
  == domain 1    score: 344.8 bits;  conditional E-value: 1.9e-106
   TIGR00886   1 raLflswlafflsFlvWfalspLvvqiikedlgLskaqlallvavpvlatavlRiilgflvdkfGpRkttallllllaiPllllalavssfsellllrlliGiaGasFvislamisefFpkkevGtAlglaaGlGNlGggvaqlvmp.aiieallkgagqpakkawrvalvlvpalillliallvfvvvadtppgk....saeaklsvksallslekealaevlkvlkeketwilallYivtFGselgvssilaallkdqfglskveagayasllallgllaRplGGllsDklgg.....arkllvlfllvamgaalvvlglvkesseslavavvlfvvlflfvglgnGstFalvpvvfrratgavsGlvgaiGnlGg 368
                 ra+++sw +ff++F++Wfa++pL++  ik dlgL+k++++++++v+v +t+++R+ilg+++dk+G R+ +a+ l+l++iP+++++l++ ++++l++lrl+iG aG++Fv+++++ s++F  ++vGtA++l +G+GNlGggv+ql+m  a++  + k +  +a kaw+v   +vpa++++ +++l++++ +d+p+g+    ++ +++  +sa +s+++         + + +tw+l+++Y+++FG+el+++++ a ++kdqf ls+  a+a+as++++++l+aR lGG+lsDk ++     +r ++ +++l+a g++++v++++    +sl +a++++v+++lfv++++G ++ +vp+v++ atg +sG+vga+Gn+G+
  MMETSP1061-20121228|4551_1  45 RAFHCSWWGFFVAFFIWFAIAPLLS-EIKVDLGLTKQEIWTSSIVGVGGTIFMRFILGPACDKWGARIPMAAILCLASIPTACTGLVK-TATGLAILRLFIGAAGGTFVMCQYWSSRMFCREVVGTANALCGGWGNLGGGVTQLIMGsALFPLFKKIYDGDASKAWKVVS-IVPAIVAFGTGVLIYFFSDDAPKGNyadlKKHGQMAEVSAGASFRQ--------GAFNINTWFLFIQYACCFGVELTMNNAAALYFKDQFLLSTESAAAIASIFGFMNLFARGLGGYLSDKGNQymgmrGRLWAQTICLIAEGVLVLVFANT----KSLGGAIAVMVFFSLFVQAAEGTSYGIVPYVDPPATGSISGIVGAGGNTGA 407
                 89***********************.668***********************************************************.*********************************************************97666655555577899*****99.*************************555544444444444444444........45559**************************************************************99999***********************996....58***********************************************97 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4  18.4     1e-16   6.8e-14      18     389 ..      69     436 ..      54     442 .. 0.84

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 1e-16
   TIGR00893  18 vtlkedLglsaaqyglvfsafsi.gyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs...........WqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalval.affgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalal 389
                 +++k dLgl+++++ +  s++ + g +++ +  g ++d+ Ga++ +a ++ l ++ t+ +++++++++l++lR  +G+a + ++ +    ++  F ++  +ta+++      lg+ + + ++g++l  +            W++v i+ +++a+  gvli+++  d+p+    + ++ k   +g+    +a+     ++ a++++   ++++++l++ +++   +  +++  + ly k+++ ls+++a+ +as+ + + + +  lgg+lsd   +  + +  +  +  i++++  +l+ ++++++s   a+a+++  + f +++      +++ ++++ + g+  G++ + Gn++++++ + +  +   t  f +++++++  +l
  MMETSP1061-20121228|4551_1  69 SEIKVDLGLTKQEI-WTSSIVGVgGTIFMRFILGPACDKWGARIPMAAILCLASIPTACTGLVKTATGLAILRLFIGAAGGTFVMCQ-YWSSRMFCREVVGTANALCGGWGNLGGGVTQLIMGSALFPLFkkiydgdaskaWKVVSIVPAIVAFGTGVLIYFFSDDAPK---GNYADLK--KHGQ----MAEV----SAGASFRQGAFNINTWFLFIQYACCFGVELTMNNAAALYFKDQFLLSTESAAAIASIFGFMNLFARGLGGYLSDKGNQY-MGMRGRLWAQTICLIAEGVLVLVFANTKSLGGAIAVMVFfSLFVQAAEGTSYGIVP-YVDPPATGSISGIVGAGGNTGAVCFGLGFRNLSYKTAFFIMGFTILGSSVL 436
                 4699*******998.6667776615677899************************************************99888876.5678899****************************99988778999**********************************9...3333333..3444....2222....245789********************************************************************86665.68888888888888888888888876666666655555404444444666666665.78888999999***************9999999999888888888876654 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   3.4     3e-11     2e-08       8     118 ..      41     150 ..      35     220 .. 0.85
   2 ?   -1.6   1.0      0.34   2.3e+02     273     345 ..     298     376 ..     267     390 .. 0.50

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 3e-11
   TIGR00891   8 rdqwnafsaaylgylldafdfflvalvlaevaeefdrttkdv....afllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGey 118
                 r + +af  ++ g+ ++ f +f +a  l+e++   ++t++++     ++++ ++++r     +lG   D+ g r+p+   + l s+ t +++   t + l i+rl iG + gG +
  MMETSP1061-20121228|4551_1  41 RPHMRAFHCSWWGFFVAFFIWFAIAPLLSEIKVDLGLTKQEIwtssIVGVGGTIFMR----FILGPACDKWGARIPMAAILCLASIPTACTGLVKTATGLAILRLFIGAA-GGTF 150
                 66789**********************************999322123455566666....69*********************************************76.5544 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.34
   TIGR00891 273 kdtvavivvvsniGai....vGglv...fGtlsevlgrrkalvialllgqllivPvfals.aekavLglglfllqllvqGv 345
                 ++++a i  + ++  +    +Gg +   + +++ + gr  a  i+l++ ++l++ vfa + +    +++ +f+  l+vq +
  MMETSP1061-20121228|4551_1 298 TESAAAIASIFGFMNLfargLGGYLsdkGNQYMGMRGRLWAQTICLIAEGVLVL-VFANTkSLGGAIAVMVFF-SLFVQAA 376
                 444444443333333300014444411123344445555667777777765544.666542222222222222.2333332 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2  14.8   7.3e-11     5e-08       6     366 ..      56     414 ..      51     428 .. 0.77

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 7.3e-11
   TIGR00881   6 ayylvRknfalalpelqeeiglsktdlGlllsafsiaYg.iskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllai....allls......whvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeedkekkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDk..lfkgrraplavifmaliivsllvywlivaanklvvlillfvlGflvyGpilligvaaselapkkaiGtaaglvglfaylggilaglpl 366
                 + +++   +a +l e++ ++gl+k+++   +s + +  + + +f+ g + D+ +ar+ +a+ L l++i +   g +++ + l++l+++ G + g+ +++c+    + f r+  Gt+ a+     n+gg++   ++  a+    + +++      w+vv ivp+i+a   ++++  +  d p+      ++          k+ + +e+++  ++ ++  +n++ w + + +   + v + +++ + lY +++  ls e+a ++ ++f +  l    l G+lsDk   + g r+ l     +li  ++lv+    +++    +++++ + ++v      ++   +  + + a G+ +g+vg  ++ g++  gl++
  MMETSP1061-20121228|4551_1  56 VAFFIWFAIAPLLSEIKVDLGLTKQEIWT-SSIVGVGGTiFMRFILGPACDKWGARIPMAAILCLASIPTACTGLVKTATGLAILRLFIGAAGGT-FVMCQYWSSRMFCREVVGTANALCGGWGNLGGGVTQLIMGSALfplfKKIYDgdaskaWKVVSIVPAIVAFGTGVLIYFFSDDAPKGN---YADLK--------KHGQMAEVSAGASF-RQGAFNINTWFLFIQYACCFGVELTMNNAAALYFKDQFLLSTESAAAIASIFGFMNLFARGLGGYLSDKgnQYMGMRGRLWAQTICLIAEGVLVLVFANTKSLGGAIAVMVFFSLFVQAA-EGTSYGIVPYVDPPATGSISGIVGAGGNTGAVCFGLGF 414
                 55555555666677888888889998843.333333333268************************************************98776.77777799*************************9996554433111122221222222777788888888888888887777777532...22222........22334455555554.555689***************************************************************999999****************99999977777555445555555555443.446667778888999*********99999998777765 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   1.8   2.7e-09   1.9e-06     229     396 ..      24     190 ..       8     192 .. 0.81
   2 ?   -0.5   4.4      0.14        95     281     371 ..     295     392 ..     235     412 .. 0.61

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.7e-09
   TIGR00895 229 ekseekkkrsvvkllfkgklakatllLwllyflllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagv 396
                 +  + +k++ ++   f+    +a  + w ++f+  ++ ++++  l  + v++g   ++  +  ++   G ++  ++lg + d+ g +  +a++l la++     +  ++  t+l++l +++G+ + g  ++    +++++  ++ +t+ +   g G lg+ +  +++g+
  MMETSP1061-20121228|4551_1  24 DPDQDDKATRIKLCSFARPHMRAFHCSWWGFFVAFFIWFAIAPLLSEIKVDLGLTKQEIWTSSIVGVGGTIFMRFILGPACDKWGARiPMAAILCLASIPTACTGL-VKTATGLAILRLFIGA-AGGTFVMCQYWSSRMFCREVVGTANALCGGWGNLGGGVTQLIMGS 190
                 5555566666777777777778888889999999999999999999999999999999888888888888999999999999999997778888888887777777.8999999999999996.567788888889999999999999999999999999999888885 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.14
   TIGR00895 281 gaslskaalllvllnvGgvlgslllgaladrlgp......k..vlalllllaavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYptai 371
                   s++ aa++  ++ +  +++  l g+l+d+ ++      +  + ++ l++ +v++  v+++++s  +++ ++v++ lfv++a +  +++ + + p+a+
  MMETSP1061-20121228|4551_1 295 LLSTESAAAIASIFGFMNLFARGLGGYLSDKGNQymgmrgRlwAQTICLIAEGVLVL-VFANTKSLGGAIAVMVFFSLFVQAAEGTSYGIVPYVDPPAT 392
                 445555566666666666666666666666644311111122134455555566555.55559999999*******************99998888765 PP

>> TIGR03750  conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.7     1e-05     0.007      10      66 ..      69     125 ..      60     135 .. 0.87
   2 ?   -2.2   0.5       1.2   8.2e+02      37      63 ..     346     371 ..     335     377 .. 0.43
   3 ?   -3.1   0.1       2.4   1.7e+03      20      41 ..     419     440 ..     413     449 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1e-05
   TIGR03750  10 repvvfrGltadElvvaavvglvlglvlglllalllgswaliptgallgvilvvlig 66 
                 +e  v  Glt++E+++  +vg+  ++ + ++l  ++ +w +   +a +++++++  +
  MMETSP1061-20121228|4551_1  69 SEIKVDLGLTKQEIWTSSIVGVGGTIFMRFILGPACDKWGARIPMAAILCLASIPTA 125
                 6777888********************************999999999999998655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.2
   TIGR03750  37 lglllalllgswaliptgallgvilvv 63 
                  g+l+++++ + +l   ++ ++v+ ++
  MMETSP1061-20121228|4551_1 346 EGVLVLVFANTKSL-GGAIAVMVFFSL 371
                 34444444443333.333333333333 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 2.4
   TIGR03750  20 adElvvaavvglvlglvlglll 41 
                  +  +++++++++  +vl+l++
  MMETSP1061-20121228|4551_1 419 YKTAFFIMGFTILGSSVLSLVI 440
                 5555556666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 1580.57
//
Query:       MMETSP1061-20121228|4560_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 386.19
//
Query:       MMETSP1061-20121228|4561_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.42
# Mc/sec: 804.50
//
Query:       MMETSP1061-20121228|4558_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1676.75
//
Query:       MMETSP1061-20121228|4564_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-71  237.3   0.0    4.8e-71  237.2   0.0    1.0  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    2.5e-48  162.4   0.0    2.7e-48  162.3   0.0    1.0  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    1.2e-06   24.9   0.0    1.5e-06   24.7   0.0    1.0  1  TIGR00232 tktlase_bact: transketolase
     0.0041   12.9   0.0     0.0062   12.2   0.0    1.4  2  TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
  ------ inclusion threshold ------
      0.016   11.6   0.0      0.037   10.4   0.0    1.6  2  TIGR01504 glyox_carbo_lig: glyoxylate carboligase


Domain annotation for each model (and alignments):
>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.2   0.0   5.8e-74   4.8e-71     107     340 ..      22     269 ..       1     270 [. 0.90

  Alignments for each domain:
  == domain 1    score: 237.2 bits;  conditional E-value: 5.8e-74
   TIGR03181 107 kgsklp.....eevnilpinvpigtqvlhAaGvAlalklkg......ekevavayiGdGgtsegdfyealnfAavfkapvvfvvqNNqwAISvprskqtaaktlaqkavaagipgvqvDGnDvlAvyevvkealekArkgegPtLiEavtYRlgaHttaDdptrYrskeeee.ewkkkdPiarlrkyLeekglld..eekeeeleeeaeeevkeaveeveelpkpkvedlfdnvYaelpkeleeqkee 340
                 kg+++p     ++ n  +i+ p+gtq+++A+GvAl lk+        +k v++a++G+G ts+ df+ +lnfAa  k pv+f+++NN++AIS+++++q a + ++++a ++g+ g++vDGnDv+Av+++v+ea+++A k + P+LiEa++YR+g H+t+Dd  +Yrs+ee +  ++++dP+ rl+++ +++ + d  +ek++++ ee ++++ +a++++e++pkp+ edlf++vY+++p++l++q+++
  MMETSP1061-20121228|4564_1  22 KGRQMPihygsRALNYQTISSPLGTQIPQAVGVALRLKMMAaadssvKKGVSIAFFGEGCTSTTDFHSGLNFAATLKCPVIFLCRNNGYAISTSTKEQFAGDGVVSRAPGYGMAGIRVDGNDVFAVHAAVREARAYALKHNAPVLIEAMSYRQGHHSTSDDSLQYRSAEEIDhFASESDPLDRLQNFFKRHVYHDttDEKVQSIIEEEKNNILDALRTAERKPKPPLEDLFTDVYKDMPPSLKAQQNM 269
                 456666555556788899999****************999888888889***************************************************************************************************************************76778************99886522677899******************************************976 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.3   0.0   3.4e-51   2.7e-48      82     315 .]      14     257 ..       1     257 [. 0.91

  Alignments for each domain:
  == domain 1    score: 162.3 bits;  conditional E-value: 3.4e-51
   TIGR03182  82 lgketGvskGkGGsmHlfdkekkflGGhgivgaqvplatGlafaekyk......kedevtlaffGdgavnqGqvyEslnlaalwklPvifviennkyamGtaverssaekdlakkgesfgikglevdGmdvlavreaakeavervragkgPvllelktyRfrgHslsDpa.kyRskeeveevk.krdpieklkkaliekgl..lseeelkeiekevkaeveeavefaeespepdveeLlkdvya 315
                  g ++ + kG+   +H  ++  ++    + +g q+p a+G+a+  k+        ++ v++affG+g ++   ++  ln+aa  k+Pvif++ nn ya+ t+++ + a   +++++  +g++g++vdG dv+av++a++ea +++ +++ Pvl+e+ +yR   Hs sD   +yRs ee+++++ ++dp+++l++ ++++ +   ++e++++i +e k+++ +a + ae++p+p++e+L++dvy+
  MMETSP1061-20121228|4564_1  14 SGNASDLGKGRQMPIHYGSRALNYQTISSPLGTQIPQAVGVALRLKMMaaadssVKKGVSIAFFGEGCTSTTDFHSGLNFAATLKCPVIFLCRNNGYAISTSTKEQFAGDGVVSRAPGYGMAGIRVDGNDVFAVHAAVREARAYALKHNAPVLIEAMSYRQGHHSTSDDSlQYRSAEEIDHFAsESDPLDRLQNFFKRHVYhdTTDEKVQSIIEEEKNNILDALRTAERKPKPPLEDLFTDVYK 257
                 5566666667777778888888888888899**************9997777766789*************************************************************************************************************98879**********99**********99988652257899**********************************95 PP

>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.8e-09   1.5e-06     107     280 ..      39     209 ..      27     276 .. 0.69

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.8e-09
   TIGR00232 107 vttGPLGqGianavGlalaektlaaefnkesaeivdhytyvlvGDGdlqeGisseaaslaGhlkLgkLivlyDsnkisidgeveksfs.edvkkRfeaygWevlevedgedleeikkaiekakk...skdkPtlikvktiigfgspnkegteevhgaplkeeevkllkkklglnyeeF 280
                 + + PLG  i +avG+al  k++aa     ++++      ++ G+G+      +   ++a +lk   +i l  +n   i +++++ f  + v +R   yg   ++v dg+d+ ++++a+++a++   +++ P li++      g  + ++ +  + ++ + ++++   + l+   + F
  MMETSP1061-20121228|4564_1  39 TISSPLGTQIPQAVGVALRLKMMAAA----DSSVKKGVSIAFFGEGCTSTTDFHSGLNFAATLKC-PVIFLCRNNGYAISTSTKEQFAgDGVVSRAPGYGMAGIRV-DGNDVFAVHAAVREARAyalKHNAPVLIEAMSYR-QGHHSTSDDSLQYRSAEEIDHFASESDPLDRLQNFF 209
                 5578******************9985....5668888899***********99**********97.5899*************9998726699************9.99*************9822234568888876532.222223444444444444444444444444333333 PP

>> TIGR00239  2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.37   3.1e+02     390     415 ..       3      28 ..       3      31 .. 0.83
   2 !   12.2   0.0   7.6e-06    0.0062     407     462 ..     128     183 ..      64     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.37
   TIGR00239 390 GfttepaearstkyasdlakaieaPi 415
                 Gft +    +    asdl+k+ ++Pi
  MMETSP1061-20121228|4564_1   3 GFTLQQFADQCSGNASDLGKGRQMPI 28 
                 788877777777889**********9 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 7.6e-06
   TIGR00239 407 lakaieaPivhvnaddpeavafvvklaveyrkkfkkdvlidlvgyrrhGhneadeP 462
                  a ++ +  + v+++d+ av  +v+ a  y  k +  vli+ ++yr+  h   d+ 
  MMETSP1061-20121228|4564_1 128 RAPGYGMAGIRVDGNDVFAVHAAVREARAYALKHNAPVLIEAMSYRQGHHSTSDDS 183
                 55666677799***********************************9888777764 PP

>> TIGR01504  glyox_carbo_lig: glyoxylate carboligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.24     2e+02     408     431 ..      32      55 ..      22      72 .. 0.77
   2 ?   10.4   0.0   4.5e-05     0.037     500     568 ..     114     185 ..      88     202 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.24
   TIGR01504 408 drhwincgqagplgwtvpaalgva 431
                  r       + plg  +p a+gva
  MMETSP1061-20121228|4564_1  32 SRALNYQTISSPLGTQIPQAVGVA 55 
                 555555556789**********97 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 4.5e-05
   TIGR01504 500 ssevagygvd.hvkvaeglgckairvtkpeela..aaleqakklmaeyrvpvvvevilervtnismgseidn 568
                 +s ++ +  d  v  a g g   irv   + +a  aa+++a++ + ++  pv++e++  r    s +++  +
  MMETSP1061-20121228|4564_1 114 TSTKEQFAGDgVVSRAPGYGMAGIRVDGNDVFAvhAAVREARAYALKHNAPVLIEAMSYRQGHHSTSDDSLQ 185
                 44444444441577899*********8877665448*********************999988888866544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1009.54
//
Query:       MMETSP1061-20121228|4565_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 587.35
//
Query:       MMETSP1061-20121228|4559_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-106  354.0   0.0   1.6e-106  353.8   0.0    1.0  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    1.2e-46  156.9   0.0    1.5e-46  156.6   0.0    1.1  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    7.6e-38  128.0   0.0    2.2e-37  126.4   0.0    1.6  1  TIGR01179 galE: UDP-glucose 4-epimerase
      8e-27   92.1   0.0    1.2e-26   91.6   0.0    1.2  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    8.8e-25   85.3   0.0      1e-24   85.1   0.0    1.0  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    1.1e-15   55.4   0.0    1.3e-15   55.1   0.0    1.1  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    1.1e-14   51.9   0.0    6.4e-13   46.1   0.0    2.2  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
      3e-13   47.2   0.0    1.6e-12   44.9   0.0    1.9  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
    1.9e-11   41.6   0.1    3.2e-11   40.8   0.0    1.4  1  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    5.2e-10   36.9   0.0    1.4e-09   35.5   0.0    1.7  1  TIGR01746 Thioester-redct: thioester reductase domain
    2.7e-06   25.0   0.0    8.7e-06   23.3   0.0    1.8  1  TIGR01777 yfcH: TIGR01777 family protein
      5e-05   20.2   0.0     0.0038   14.0   0.0    2.1  2  TIGR04130 FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase


Domain annotation for each model (and alignments):
>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.8   0.0  4.7e-109  1.6e-106       2     316 ..      10     327 ..       9     332 .. 0.96

  Alignments for each domain:
  == domain 1    score: 353.8 bits;  conditional E-value: 4.7e-109
   TIGR01181   2 lLvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevrllhistDevyGdlekdd.aeftettplaPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpekliPllitnalagkklpvyGdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldk...dedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWylenes 316
                 +++tGGaGfi s +   + ++ p++++vv+D+L y++ +enl +l+d ++++f+kgdia ++lv+  + ee++d+v++faa++hvD+s  ++ af+++n+ Gt++lle+++++ +  r++h+stDevyG+ e+ d   ++e++ l+P++Py+a+ka+++ lv++y+r+++lp litr+ n yGp+qfpekliP++  + ++gkkl+++GdG++ r++lyveD ++a +++l+kg+ g +ynigg++e +nl+v k++l+l++    +++ i++v dr+ +D+ry++++sk++ eLgw+ k+  eegl++tv+Wy++  s
  MMETSP1061-20121228|4559_1  10 IFLTGGAGFIASHVAILLCKKYPQYNIVVYDRLDYCSCLENLDELTDLPNFKFIKGDIATADLVTYAFIEEEIDTVMHFAAQTHVDNSFGNSMAFTQSNIYGTHVLLECAKNCPTIKRFVHVSTDEVYGEGEDFDtDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRSFKLPCLITRGNNVYGPHQFPEKLIPKFTNQLMRGKKLTLHGDGSNTRNFLYVEDVANAFDTILHKGTPGSIYNIGGDNEISNLTVAKTLLKLFGLddeENNWINFVPDRTFNDLRYTINSSKLH-ELGWTEKMPWEEGLKTTVEWYKKYTS 327
                 789*************************************************************************************************************887888************9998877799***********************************************************************************************************************98643337789*********************9.*********************98766 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0   4.4e-49   1.5e-46       1     257 [.      10     271 ..      10     290 .. 0.91

  Alignments for each domain:
  == domain 1    score: 156.6 bits;  conditional E-value: 4.4e-49
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekev.kkeievvlGdirdaesvkkav..kgvdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardl.evekvvhtstsevyGtaq...yvPidekhplqaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPtiitqilsgkkkiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkliaeilg 257
                 +++tG  Gfi sh++  l +k +    +v y+ ++    l+++++ +   +++ ++Gdi  a+ v  a   +++d+v+h+aa   +  s+  ++++ ++n+ Gt  +l++a++   ++++vh st evyG  +   + P++e+h l++  Py+a+k ga+ l++s++rsf+lP  i r  n yGP q    +iP    q++ gkk    G+ s tr+f yv+d++++f ++ + + + G + nig + eis   ++k++ +++g
  MMETSP1061-20121228|4559_1  10 IFLTGGAGFIASHVAILLCKK-YPQYNIVVYDRLDYCSCLENLDELTdLPNFKFIKGDIATADLVTYAFieEEIDTVMHFAAQTHVDNSFGNSMAFTQSNIYGTHVLLECAKNCpTIKRFVHVSTDEVYGEGEdfdTDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRSFKLPCLITRGNNVYGPHQFPEKLIPKFTNQLMRGKKLTLHGDGSNTRNFLYVEDVANAFDTILH-KGTPGSIYNIGGDNEISNLTVAKTLLKLFG 271
                 689**********98766665.66678999************996442579*********99999876533789**************************************974799************98622267*******************************************************************9999*******************99875.6789*************9999988877765 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0   6.5e-40   2.2e-37       2     329 ..      10     326 ..       9     329 .. 0.85

  Alignments for each domain:
  == domain 1    score: 126.4 bits;  conditional E-value: 6.5e-40
   TIGR01179   2 iLvtGgaGyiGshvvrqllek..gkevvvlDnlsk.gskealkalekitevklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqka.gvkkliFsssaavYgese...kvpisEesplnpinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdik....veladrR.aGDpaslvadaskikrelgwkpkyddLeeiiksawdWekklk 329
                 i +tGgaG+i shv+  l +k  ++++vv+D l   +  e l +l+ + ++k+++gd+a +  ++ ++ ee+id+v+Hfaa+++v +s  + + + ++n+ +t +Lle+ ++  ++k+++  s+  vYge e   + p+sEe+ l+p+npY ++k+ +E ++k + ++  +l + i R  nv G ++            +li+  ++  + + +kl+++G      DG   R++++veD+a+a  +    l++g+  ++yn+G ++  s + v +++ k+ g d +    +++ + R   D+   + ++s   +elgw+ k+   ee +k++ +W kk +
  MMETSP1061-20121228|4559_1  10 IFLTGGAGFIASHVAILLCKKypQYNIVVYDRLDYcSCLENLDELTDLPNFKFIKGDIATADLVTYAFIEEEIDTVMHFAAQTHVDNSFGNSMAFTQSNIYGTHVLLECAKNCpTIKRFVHVSTDEVYGEGEdfdTDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRS-FKLPCLITRGNNVYGPHQ---------FPEKLIPKFTNQLM-RGKKLTLHG------DGSNTRNFLYVEDVANAFDT---ILHKGTPGSIYNIGGDNEISNLTVAKTLLKLFGLDDEennwINFVPDRtFNDLRYTI-NSS-KLHELGWTEKMP-WEEGLKTTVEWYKKYT 326
                 899***************99844688*******7614578888888888************************************************************9987479*************976222679***************************999.9**************864.........33489998888776.8999****9......79999***********9865...56778899**********************999765411123445555055555444.444.46789**99999.9999999999998875 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.0   3.4e-29   1.2e-26       2     343 ..       5     335 ..       4     340 .. 0.79

  Alignments for each domain:
  == domain 1    score: 91.6 bits;  conditional E-value: 3.4e-29
   TIGR02622   2 wkgkkvlvtGhtGfkGsWlslwLkelGaevaGysldpetkpnlfellklakklkd.ssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenkewv..wgyretdalGGhDpYsaskaaaelvvasyrksflkeankekikiasaRaGnviGGGDwaedRlvpDviralssnkaveiRnp.kavrPWqhvLepLsGYlllaeklledeaelaeafnfGPeaeenk.kvvelvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWykeaylkgeeveel 343
                 ++ k++++tG  Gf  s +++ L +   + +    d     +  e l+  ++l + + + gdi  a+ ++ a+ e + + v+h+aaq+ v +s+ + +   + n+ Gt  lle ++++ ++k  v v +D vY   e +      e+ +l   +pY+a ka ae++v+sy +sf            ++R+ nv G   +  ++l+p   + l  +k++++    + +r + +v +  + +      l ++  +  + +n+G ++e ++ +v +++ k+  l   +++++ +   ++++++ ++ +++s+k  ++lgw+ ++  ee +++tveWyk++ ++  ++e++
  MMETSP1061-20121228|4559_1   5 YTPKNIFLTGGAGFIASHVAILLCKKYPQYNIVVYDRLDYCSCLENLDELTDLPNfKFIKGDIATADLVTYAFIEEEIDTVMHFAAQTHVDNSFGNSMAFTQSNIYGTHVLLECAKNCPTIKRFVHVSTDEVYGEGEDFdtDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRSFKL-------PCLITRGNNVYGPHQFP-EKLIPKFTNQLMRGKKLTLHGDgSNTRNFLYVEDVANAFDT---ILHKG--TPGSIYNIGGDNEISNlTVAKTLLKLFGLD-DEENNWINFVPDRTFNDLRY-TINSSK-LHELGWTEKMPWEEGLKTTVEWYKKYTSRYGNIENA 335
                 7789*******************9988776666666666666666554433333326799*************************************************************************998865115799****************************966.......45689999999999986.68*****************9762569******999887633...34444..33579****998644404444444443333.23334444333344444443.445554.468*********************888877777765 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.1   0.0     3e-27     1e-24       1     315 [.      10     324 ..      10     325 .. 0.80

  Alignments for each domain:
  == domain 1    score: 85.1 bits;  conditional E-value: 3e-27
   TIGR02197   1 iivTGgaGfiGsnlvaalnekg.etdilvvDklrkge...kllnlkdeeiadyidkeellerleke..elkkveavfHegAisdTtel..dgellmenNyeyskellelcae..kevkliYASSAavYGdseeefreekele...rPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsfndlaaavvkalg.kdekieyidm.PealrgkyqkfTqadleklreagykkeflsleegvkdYvkella 315
                 i +TGgaGfi s ++  l++k  + +i+v D+l   +   +l +l+d    ++i+ +  +  l +     +++++v+H +A ++  +   +     ++N+  ++ lle++++  + ++++  S   vYG++e+  ++  ++e   +P N Y+  K+  + lv+    ++ k   ++  r  NVyGp+ +       ++ k++nq++++kk+ L         G ++R F+yv+Dv+++  ++l+k +   i+n+G  +  s   +a++++k +g  de+ ++i++ P++  +    +T  + +kl+e g + e++  eeg+k+ v+++++
  MMETSP1061-20121228|4559_1  10 IFLTGGAGFIASHVAILLCKKYpQYNIVVYDRLDYCScleNLDELTDLPNFKFIKGDIATADLVTYafIEEEIDTVMHFAAQTHVDNSfgNSMAFTQSNIYGTHVLLECAKNcpTIKRFVHVSTDEVYGEGEDFDTDPMSEEhvlEPTNPYAATKAGAEFLVKSYF-RSFKL-PCLITRGNNVYGPHQFP----EKLIPKFTNQLMRGKKLTLHGD------GSNTRNFLYVEDVANAFDTILHKGTPGSIYNIGGDNEISNLTVAKTLLKLFGlDDEENNWINFvPDRTFNDL-RYT-INSSKLHELGWT-EKMPWEEGLKTTVEWYKK 324
                 679******************9899*********97755577788888777888877777766666334589*********99877762255556799**********9987324579***********87766655555557789***********999998554.54444.67778********9764....34799**************865......5556*******************98899***********************965558899997366643333.344.456777666665.567899999999999975 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   3.9e-18   1.3e-15       2     230 ..      10     274 ..       9     321 .. 0.83

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 3.9e-18
   TIGR01214   2 ilitGakgqlgreLveqlskegsevvaltrs.......................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvga..llvhiSTDYvF.DG..ekkrpYreedetnPlnvYgqsKlaGEvavraase....kalivRtswlygasgg.rnFvktmlrlakereelkvvadQigsPT..yakdlaevlaaller.eargvyHlanegqvSwyefaqaifevleeeg 230
                 i++tG++g ++++ +  l k++ ++  +  +                       + d++ ++ ++  + e++ d+v++ aA t+VD++  +  +  + N  +t++l + a+++ +  ++vh+STD v+  G   +++p +ee +  P n Y+++K   E +v++++       li R   +yg +   +  +    + + ++++l    d   +    y++d+a++   +l++ +   +y + +++++S +  a+++++ ++ + 
  MMETSP1061-20121228|4559_1  10 IFLTGGAGFIASHVAILLCKKYPQYNIVVYDrldycsclenldeltdlpnfkfiKGDIATADLVTYAFIEEEIDTVMHFAAQTHVDNSFGNSMAFTQSNIYGTHVLLECAKNCPTikRFVHVSTDEVYgEGedFDTDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRsfklPCLITRGNNVYGPHQFpEKLIPKFTNQLMRGKKLTLHGDGSNTRNflYVEDVANAFDTILHKgTPGSIYNIGGDNEISNLTVAKTLLKLFGLDD 274
                 8899*********999999865555444433459999**************999*************9999*******************9999999*********9999999753379********9556334699***************************9985545579*********998667888888899999*******99765543339************9988889*****************9999888776 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.9e-15   6.4e-13       2     242 ..       9     269 ..       8     288 .. 0.78
   2 ?    3.7   0.0     0.015         5     300     323 ..     300     324 ..     286     327 .. 0.79

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1.9e-15
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrkt....sdrrnleel....dvEiveGdlkdeaslkkal..kGcealfHvAAdyrlwak..dpeelykanvegtravleaAlea.gvervvytssvatlgvkedgkeadettpsklekmiGhYkrskflAEqaveelaae.glpvvivnPstPiGprDikptPtgriivdalkr.kmPayvd..tgLnlvdvddvaegHllAlerGriGerYiLGgen....ltlkqllekl 242
                 + ++tG++GF+ s+v+ ll ++  +  ++v +     s  +nl+el    +   ++Gd++ ++ ++ a   + +++++H AA++++     ++ +++++n+ gt+ +le A++   ++r v+ s+  + g  ed   +d  ++ ++ +   +Y  +k  AE  v++  ++ +lp +i       Gp+        +   + +++ k+  + d     n++ v+dva++  + l++G  G  Y +Gg+n    lt+++ l kl
  MMETSP1061-20121228|4559_1   9 NIFLTGGAGFIASHVAILLCKKYPQYNIVVYDRldycSCLENLDELtdlpNFKFIKGDIATADLVTYAFieEEIDTVMHFAAQTHVDNSfgNSMAFTQSNIYGTHVLLECAKNCpTIKRFVHVSTDEVYGEGED-FDTDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRSfKLPCLITRGNNVYGPHQFPEKLIPKFTNQLMRGkKLTLHGDgsNTRNFLYVEDVANAFDTILHKGTPGSIYNIGGDNeisnLTVAKTLLKL 269
                 579*****************9987777666654223355678887744444799*********999997446799********99976533778889**************98638***********9996555.5667777778888899***********************************99754444455555554414555544113469**************************998532225555555554 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.015
   TIGR03466 300 ereLgyr.qrpaeealkdaveWfra 323
                  +eLg++ + p+ee+lk  veW+++
  MMETSP1061-20121228|4559_1 300 LHELGWTeKMPWEEGLKTTVEWYKK 324
                 4689986257*************97 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   4.6e-15   1.6e-12       4     128 ..       7     136 ..       4     253 .. 0.84

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 4.6e-15
   TIGR03589   4 nksilitGgtGsfGkkfikkllekykvkkiiiysrdelkqf..elqqkfeedklrffiGdvrdkerleral..edvdlvvhaaalkqvpaaeynPleciktnieGaenvidaaldk.gvkkvvalstdka 128
                  k+i++tGg+G    +    l +ky   +i++y r ++     +l++  + ++++f  Gd+   + ++ a+  e++d+v+h aa  +v+ +  n + + ++ni G++ ++++a ++  +k+ v +std  
  MMETSP1061-20121228|4559_1   7 PKNIFLTGGAGFIASHVAILLCKKYPQYNIVVYDRLDYCSCleNLDELTDLPNFKFIKGDIATADLVTYAFieEEIDTVMHFAAQTHVDNSFGNSMAFTQSNIYGTHVLLECAKNCpTIKRFVHVSTDEV 136
                 689********9999888888899999********8886542256666677*****************9986679************************************99987479*********76 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   9.4e-14   3.2e-11      55     175 ..      59     180 ..      10     258 .. 0.85

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 9.4e-14
   TIGR01472  55 alflhyGdltdsssllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkei...pqkektpfnprspyaaaklyayyivvnyreaygl 175
                 ++++  Gd++ +  ++    e + + +  +aaq+hv  sf  +   ++++  Gt  lle  +++  +k  rf   st e+yGe ++    p +e+  ++p  pyaa+k  a ++v+ y  ++ l
  MMETSP1061-20121228|4559_1  59 NFKFIKGDIATADLVTYAFIEEEIDTVMHFAAQTHVDNSFGNSMAFTQSNIYGTHVLLECAKNCPTIK--RFVHVSTDEVYGEGEDFdtdPMSEEHVLEPTNPYAATKAGAEFLVKSYFRSFKL 180
                 47777899998888887777888899**************99998889999*************9998..799*********9875333399**************************999887 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.2e-12   1.4e-09       2     197 ..      10     192 ..       9     195 .. 0.75

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 4.2e-12
   TIGR01746   2 vlLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLrealrsyrleeeklaaerievvaGdlseprlGLseaewerLaeevdtivhngAlVnfvqpY...eeLraaNVegtvevlrlaasgka.kpliyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdr.glpvtivRpGrilg 197
                 ++LTG  Gf+  + +  L+++  + +++   R +      + L++  + ++l        + +++ Gd++  +l    ++++ ++ee+dt++h +A +++  ++     + + N+ gt  +l+ a +  + k +++vSt  v+ ++e   +  +d  +e+   + +++Ya++K  aE lv+   +  +lp  i R  ++ g
  MMETSP1061-20121228|4559_1  10 IFLTGGAGFIASHVAILLCKKYPQYNIVVYDRLDY----CSCLENLDELTDLP-------NFKFIKGDIATADL----VTYAFIEEEIDTVMHFAAQTHVDNSFgnsMAFTQSNIYGTHVLLECAKNCPTiKRFVHVSTDEVYGEGE---DFDTDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRSfKLPCLITRGNNVYG 192
                 77777777777777777777767766665544444....23344444444444.......55566777777654....99******************9855552116799**************99865266**********9877...45788888888899999**************99888899999999777765 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.6e-08   8.7e-06       1     239 [.      10     268 ..      10     273 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.6e-08
   TIGR01777   1 vlitGgtGliGralveelekk..ghevviltrskekekeekkesakevaee.........aeee......alegvdavinLaGepiadkrwteerkkeileSRikttealvelikkakqkpkvlisasavgyYg...eseekelteee.eeagddFlaklceeWEeaaqaaeklgvrvvllRtgivLgekGGalakllllf..klglggkl...GsGrqwlsWihleDlvklilfaleneevsGvvNataPepvrnkefakalak 239
                 + +tGg G+i+++++  l+kk  ++++v+  r +  +  e  ++ ++ ++          a  +        e++d v++ a ++ +d+ + ++   ++++S i  t++l+e+ k++   +k ++  s+  +Yg   + +++++ ee+  e+ + + a  + +   +++ + + +    ++R   v g++  + +kl++ f  +l+ g kl   G+G++   ++ +eD++++  ++l++ +   ++N+   + ++n  +ak+l k
  MMETSP1061-20121228|4559_1  10 IFLTGGAGFIASHVAILLCKKypQYNIVVYDRLDYCSCLENLDELTDLPNFkfikgdiatA--DlvtyafIEEEIDTVMHFAAQTHVDNSFGNS--MAFTQSNIYGTHVLLECAKNCP-TIKRFVHVSTDEVYGegeDFDTDPMSEEHvLEPTNPYAATKAGAEFLVKSYFRSFKLPCLITRGNNVYGPHQ-FPEKLIPKFtnQLMRGKKLtlhGDGSNTRNFLYVEDVANAFDTILHKGTPGSIYNIGGDNEISNLTVAKTLLK 268
                 679***************9983356677777766644444434444444436666666441..25555567899*************9988765..699******************9.899************544445789999998788888999999887788899999999**************9.9999999873345667776667*************************988889************99999866 PP

>> TIGR04130  FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.1e-05    0.0038      52     126 ..      58     135 ..       5     141 .. 0.78
   2 !    4.4   0.0    0.0089       3.1     172     225 ..     198     252 ..     147     297 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
   TIGR04130  52 kklkfyigdvrdyrsilna..trgvdfiyhaaalkqvpscefhpleavktnvlgtenvleaai.anevkrvvclstdk 126
                  ++kf  gd+     +  a     +d + h aa   v       +   ++n+ gt  +le+a  +  +kr v +std 
  MMETSP1061-20121228|4559_1  58 PNFKFIKGDIATADLVTYAfiEEEIDTVMHFAAQTHVDNSFGNSMAFTQSNIYGTHVLLECAKnCPTIKRFVHVSTDE 135
                 5678888998766655554226789**************9999*****************9872569*********97 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0089
   TIGR04130 172 gsviplfvdlikagkpltit.dpnmtrfmmtledavdlvlyafehgnngdifvqk 225
                   +ip f + +  gk lt+  d   tr ++ +ed  +     + +g  g i+   
  MMETSP1061-20121228|4559_1 198 EKLIPKFTNQLMRGKKLTLHgDGSNTRNFLYVEDVANAFDTILHKGTPGSIYNIG 252
                 4689**************9548899*********999888888899999988543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.26u 0.21s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1240.00
//
Query:       MMETSP1061-20121228|4563_1  [L=1911]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1911 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.32s 00:00:00.85 Elapsed: 00:00:00.55
# Mc/sec: 4586.02
//
Query:       MMETSP1061-20121228|4569_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 516.96
//
Query:       MMETSP1061-20121228|4570_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    5.5  10.7        1.3    5.2   7.4    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.4   0.00032       1.3      23      68 ..      34      79 ..      30      82 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00032
   TIGR01642 23 RsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsisslee 68
                R+R+R+r r+r+R+R r +       ++++ ++++y++ + +++++
  MMETSP1061-20121228|4570_1 34 RDRNRNRHRNRHRNRRRGNPGLVSSANQKNNNKSNYQDDNGNDNDN 79
                4444444444444444444455556667777777777776655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 576.58
//
Query:       MMETSP1061-20121228|4566_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00047   16.8   9.2    0.00047   16.8   6.4    2.3  2  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.6   5.9         1   4.1e+03     211     230 ..     157     176 ..     132     192 .. 0.54
   2 !   16.8   6.4   1.1e-07   0.00047     173     255 ..     536     620 ..     531     655 .. 0.62

  Alignments for each domain:
  == domain 1    score: -7.6 bits;  conditional E-value: 1
   TIGR01651 211 deedtdddqpredeqeeege 230
                 + ed+d++q ++++ +++ +
  MMETSP1061-20121228|4566_1 157 ETEDNDENQNQNQNRNDDDD 176
                 22333333333222222211 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.1e-07
   TIGR01651 173 ldrlsaaiddqqafarvvrellaslel...aeelgddeesedeedtdddqpred.eqeeegeeeeegdeasaaeeaeaaeeeeesge 255
                 +d+ s+ +dd + fa v  e+ asl +    ee+  +e+++d + +d+d+  e+ e++ +  +++++d++++ ++   +++ e++ +
  MMETSP1061-20121228|4566_1 536 IDEWSSLVDDYAGFASVLSEVEASLGIpglMEEYFGEEDAQDASSSDEDESSEEdEDDTDDTDDDDDDDNAEGDN--DSDNGEKDDD 620
                 8999*********************85222566666666666555555554433033333333333333333332..2222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.18s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 2737.83
//
Query:       MMETSP1061-20121228|4576_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1369.39
//
Query:       MMETSP1061-20121228|4572_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.36
# Mc/sec: 2724.11
//
Query:       MMETSP1061-20121228|4578_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-24   83.5   7.6    4.8e-24   82.8   5.2    1.2  1  TIGR01065 hlyIII: channel protein, hemolysin III family


Domain annotation for each model (and alignments):
>> TIGR01065  hlyIII: channel protein, hemolysin III family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   5.2   1.2e-27   4.8e-24       9     203 ..     171     376 ..     165     377 .. 0.87

  Alignments for each domain:
  == domain 1    score: 82.8 bits;  conditional E-value: 1.2e-27
   TIGR01065   9 HligivlaivalvlllalsseakalavlsvlvyglslvlLflvStlyHsva.kaekakkvlkklDhaaIyvlIAgsYtpv..lllelksalgltvlviiWllallgiilklvfkkrpkllslvlYlvmGwlvvlvvktllenlsgaalvlLalGGvlYtvGavfyalkekip........lkla.HaiwHlfvlgasavhfvailly 203
                 Hl++i  +++a++  +a +++ +   v + l++ +++  + +vS+++H+++ k+ + + + +klD +aI++ IA+ Y  +  ll+  ++  +++++ ++W+ a++g +lk  f ++p + +  ++lv Gw ++ +++ l++++s+   + L+ GG++ t+Ga+ y l+++++        + ++ H+++H+ +l+  +  +++++++
  MMETSP1061-20121228|4578_1 171 HLLAIRSSAAAATAATAAAASPH-NLVRASLLFSFAVESIMVVSATLHRFPwKTYRGHGIARKLDFTAIFFGIASLYSSMgrLLMGHHHLWKSVIEPLVWTCAIVGSLLKWKFPNAPPWANASVFLVQGWATLPCIPILVRSASPSEASGLVGGGLFVTLGALAYSLQWPKNvhnkaqreIVFGpHEVFHVGTLLMVVSFWYTMWVN 376
                 77777777777666666666655.45667789*******************999***********************998334555677778899**************************************************************************9997766654333459********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 2069.59
//
Query:       MMETSP1061-20121228|4575_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 617.71
//
Query:       MMETSP1061-20121228|4579_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 323.97
//
Query:       MMETSP1061-20121228|4580_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.3    3.4   8.7        4.2    3.5   6.0    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   6.0     0.001       4.2     321     396 ..       7      62 ..       1      74 [] 0.33

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.001
   TIGR02442 321 keekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkl 396
                 +++++                   ++++e++  ++++ p++ de++e ++e+ e+ + + e ++ ++a+k  ++++
  MMETSP1061-20121228|4580_1   7 DNNND-------------------DDNNEQQAGANRSMPNETDENQESSSESVEPTPAT-EGKMDSSAAKGNATRA 62 
                 11111...................12222222222444555555555555544444442.2222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 443.96
//
Query:       MMETSP1061-20121228|4583_1  [L=738]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00077   16.5   0.6    0.00077   16.5   0.4    1.9  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.4   1.9e-07   0.00077     185     274 ..      13     134 ..      11     223 .. 0.78
   2 ?   -2.7   0.6      0.12     5e+02     454     483 ..     197     227 ..      91     300 .. 0.60
   3 ?   -3.9   0.7      0.28   1.1e+03     369     453 ..     396     495 ..     389     506 .. 0.31

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.9e-07
   TIGR01628 185 nlddsvtedklrelFakfGeitSaivkkdeknrk.......rgfafvnyekaedAkkAveelngkkit.........................laatgkilyVgraqkraeReaelkakfee 274
                 +l ++v +++l++lF+kfG +  +   + +k  +         faf++ e+ae+A+ A+ el     +                          +  + +++ +++ k+++ e+++ ++ +e
  MMETSP1061-20121228|4583_1  13 DLSPEVVKQRLEKLFSKFGLVQEIYLSEKDKTTTdpgkaerPPFAFIAMETAEEARAALKELGSSGGGggggngddgepasvsssssserrlfRTVAPAKVHKSKHNKQNKSERLRSERLQE 134
                 58899****************9998765544332111111147******************9876665777777777777777766666665544444444444444444444444444444 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.12
   TIGR01628 454 lqaqgrrnlnnr.nrnvlgnmnkkqqnaask 483
                 +++++++n+n++ n+n  +n ++ q na ++
  MMETSP1061-20121228|4583_1 197 KNKKKKNNINDNdNDNDNDNDDNSQDNAPER 227
                 2222223333333333344444444444444 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 0.28
   TIGR01628 369 arLqqqfmqasaesrql..........sigspvigaan......isgrhqaaqqqavvtqavkqqlasqplnfk...inqmmlstqnpskpeapnalaqlaqqr 453
                  +Lqqq +   ++ ++           +  s  ++++       +++ + aa ++a + ++ +  + + +  ++     ++ l++ +p  p  p + + ++q++
  MMETSP1061-20121228|4583_1 396 YQLQQQSTSLVPQPKKQitdggkdtatT--SCSTTTTTssphlpLATGNSAAAAEATEDKSISRAYWKLQEAWEryeHGAPSLTEPRPPPP--PRSNTANEQNQ 495
                 4555555443333333334433333221..1111111111222222222333333333333333333333333321122222222222222..22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.53
# Mc/sec: 1837.89
//
Query:       MMETSP1061-20121228|4585_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 379.47
//
Query:       MMETSP1061-20121228|4588_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 798.53
//
Query:       MMETSP1061-20121228|4590_1  [L=1864]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1864 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       595  (0.145051); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.90u 0.18s 00:00:02.08 Elapsed: 00:00:01.26
# Mc/sec: 1952.60
//
Query:       MMETSP1061-20121228|4586_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-62  206.9   0.0    8.9e-62  206.4   0.0    1.2  1  TIGR03465 HpnD: squalene synthase HpnD
    1.1e-41  140.9   0.0    1.5e-41  140.5   0.0    1.1  1  TIGR03464 HpnC: squalene synthase HpnC
      1e-07   29.3   0.0    1.9e-07   28.4   0.0    1.4  1  TIGR01559 squal_synth: farnesyl-diphosphate farnesyltransferase


Domain annotation for each model (and alignments):
>> TIGR03465  HpnD: squalene synthase HpnD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.4   0.0   6.5e-65   8.9e-62       4     261 ..     191     459 ..     188     465 .. 0.93

  Alignments for each domain:
  == domain 1    score: 206.4 bits;  conditional E-value: 6.5e-65
   TIGR03465   4 asgssfyyamrlLpeekrealtalyAfcrevddivdeeldp.evkqakLdwwraeidrlya.GapehpvakaLadaarrfk.lpqedllevidGmemDle...qeryedfaeLklYcdrvAgavGrlsarif....GasdeetrelAehlGlAlqltnilrdvgeDae.rgRiYLPaeeLqrfgvaaadilearaspalaallaeqaeraralyaealallpaadrraqraalimaaiyralldeieadgfqvlrqrvkltklrklwia 261
                 a ++ fy + +l+pe++rea+ a+y +cr+ d+ivd   d+ ++  + L  w +++++l + G+ e+  +  L d + +++ lp   + +++ Gm mD+     + ye+f++L+lYc+rvAg+vG +++ +f    G+++  ++e A  lG+A+qltnilrdvgeDa  rgR+YLP+e+++rfgv++++++e++ +++  +++++q +ra+ +y++a++ + +++ ++  ++     +y ++ld+ie +g+++l++r  + k++kl i+
  MMETSP1061-20121228|4586_1 191 AFAKTFYLGTQLMPEAQREAIWAIYVWCRRTDEIVDAPRDNdDEMLSDLGIWETRLENLWKyGEVEDVFDLCLLDVLVKYPtLPITPFVDMVRGMLMDVPdlgTDIYENFDDLHLYCYRVAGTVGLMCLPVFgcatGYDEITAKEPALSLGVAFQLTNILRDVGEDATtRGRVYLPMEDMERFGVTKEQLFEQKVNENYINMMKFQIARAKMYYERARRGVFMLSEESRLPVQSALDAYGKILDKIEDNGYDTLTTRAYVDKWEKLSII 459
                 56789********************************76651667899***********988********9999999888549**************875221569**************************999999999*************************9548************************************************************************************************997 PP

>> TIGR03464  HpnC: squalene synthase HpnC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.5   0.0   1.1e-44   1.5e-41       8     261 ..     195     458 ..     188     462 .. 0.90

  Alignments for each domain:
  == domain 1    score: 140.5 bits;  conditional E-value: 1.1e-44
   TIGR03464   8 NFpVaslllpkrlrapvaalYafaRtaDDlaDegsasaeerlalLdalraeLdavaegepaaplle..aLaetvrerslpiepfldLleAfrqDv...svkryatfeelldYCrrSAnPvGrlvLdlagasd..eerlal..sdaiCtalQlinflqDvseDlrk.dRvYlpaddlerfgvseedlaaaqataavrellafeverarallkegapLvaevdgrlglelalivrggerilekieaagydvlrerpklkkadllvl 261
                  F  ++ l+p++ r+ + a+Y ++R  D++ D +  +++e l +L  ++ +L+++++  + + +++   L   v+   lpi+pf d++  + +Dv    ++ y++f++l+ YC r A  vG + L ++g+++  +e +a+  +  + +a Ql+n l+Dv+eD ++ +RvYlp +d+erfgv++e+l +++++++  ++++f+++ra+ ++++++  v +++ + +l ++       +il+kie+ gyd+l  r  ++k+++l +
  MMETSP1061-20121228|4586_1 195 TFYLGTQLMPEAQREAIWAIYVWCRRTDEIVDAPRDNDDEMLSDLGIWETRLENLWKYGEVEDVFDlcLLDVLVKYPTLPITPFVDMVRGMLMDVpdlGTDIYENFDDLHLYCYRVAGTVGLMCLPVFGCATgyDEITAKepALSLGVAFQLTNILRDVGEDATTrGRVYLPMEDMERFGVTKEQLFEQKVNENYINMMKFQIARAKMYYERARRGVFMLSEESRLPVQSALDAYGKILDKIEDNGYDTLTTRAYVDKWEKLSI 458
                 688999**************************************************996666665422689999999**************99983224677***************************9873334444411445789**************9998******************************************************************9999***********************99865 PP

>> TIGR01559  squal_synth: farnesyl-diphosphate farnesyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.4e-10   1.9e-07     130     226 ..     298     393 ..     275     418 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 1.4e-10
   TIGR01559 130 etvedydkychyvaGlvGlGlsrlfvaakledeslaeseelsnslGlflqktniirdyledlde.nrefWPreiWskyaeklkdlkkpenkekalecl 226
                 e  +d  +yc+ vaG vGl    +f  a   de  a++ +l  slG+ +q tni+rd  ed    +r + P e  +++    ++l +++ +e+ ++ +
  MMETSP1061-20121228|4586_1 298 ENFDDLHLYCYRVAGTVGLMCLPVFGCATGYDEITAKEPAL--SLGVAFQLTNILRDVGEDATTrGRVYLPMEDMERFGVTKEQLFEQKVNENYINMM 393
                 7789999***********99888888887777777766655..8*****************98779*******9999987777777766666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2225.61
//
Query:       MMETSP1061-20121228|4591_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|4584_1  [L=1215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-06   22.5   0.0    1.4e-05   21.9   0.0    1.3  1  TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF


Domain annotation for each model (and alignments):
>> TIGR02110  PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.4e-09   1.4e-05       3     212 ..     125     331 ..     123     347 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.4e-09
   TIGR02110   3 itLangLr.vaLvHdpaakraAAllRVaAGShdepsawPGLAHlLEHLlFlGterfqgderLmawvqrqGGqvNAsTlerttdfFFelpaealaaGleRLcemLarPlltvedqq.......rEreVleAEyialsadadarreaalldalsaahpl.rrFraGsrdslalenaalQqALrdFhrryYqAeqmqLwLqGPQsLeeLeeL.Aarfgaslaa 212
                  tL+ngL  v L  ++   r  A l V  GS de +   G+AHl EH  ++G+ +    e L       G q NA T  ++t f+   p +    G   +  m    l++v + +       +Er+ +  E  ++ +  + r e  +l  l+ + +l +rF +G+  sl    +      + +hr++Y  +++ L+L G    +e e+  A++fg  l a
  MMETSP1061-20121228|4584_1 125 GTLPNGLPyVILPNKSPPGRFEAHLQVFSGSADELEPQQGIAHLTEHVAYMGSRK---RELL----FGTGSQTNAYTDFHHTVFYAVCPVK-TPRGDMPMLPMALDALVDVMEARaegsrleKERAAVLSEMTMV-NTIEYRVECQILSTLHRENRLaKRFPIGKE-SLIRTWDT--DDVKSWHRQHYRPDNVLLYLVGDINPDEAEKViAEKFG-RLSA 331
                 5999**9637788999999*********************************975...3444....469*************887666654.4555555556665666666555500000005555555555444.344568899999999999998689****75.56555543..56899*****************9999999885255555.4544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.51
# Mc/sec: 3144.45
//
Query:       MMETSP1061-20121228|4589_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-53  176.6   0.9    8.9e-53  176.2   0.6    1.1  1  TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit


Domain annotation for each model (and alignments):
>> TIGR01958  nuoE_fam: NADH-quinone oxidoreductase, E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.2   0.6   2.2e-56   8.9e-53       2     147 ..      30     176 ..      29     177 .. 0.97

  Alignments for each domain:
  == domain 1    score: 176.2 bits;  conditional E-value: 2.2e-56
   TIGR01958   2 ieeaikkypddqkrsaileaLkeaqeekG.wvaaealeavAelleipaveveevatFYsmfetepvgryklqvCttvvCaLrGseallkalekklgiklgettkdgkftlkeveClgaCeeaPvllvnedtyerlteekleelleel 147
                 +++ ++kypd+ +++a++++L+ aq+++G w++ +a+++vA+++++++v+v+eva+FY+mf+++pvg+y +qvC t++C+++Gse+++++++++lgik g+t k g ftl eveClgaC++aP++++n+d+ye l++e + elle++
  MMETSP1061-20121228|4589_1  30 VNRVLQKYPDNYRQAAMIPLLDLAQRQNGgWLPLAAMDKVAQICHVAPVRVYEVASFYTMFNRTPVGKYFMQVCGTTPCMICGSEEIMQTIQDHLGIKNGQTSKCGYFTLLEVECLGACANAPMVQINDDYYECLSKETMIELLEAM 176
                 67889**********************766******************************************************************************************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1203.13
//
Query:       MMETSP1061-20121228|4592_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-12   44.6   1.9    1.3e-11   41.8   0.0    2.6  3  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.8e-12   44.3   0.0    1.8e-12   44.3   0.0    2.0  3  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    3.1e-12   42.9   0.0    1.1e-11   41.0   0.0    1.7  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    7.5e-12   42.1   0.0      6e-08   29.2   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
      3e-06   24.0   0.0    6.5e-06   22.9   0.0    1.6  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    2.6e-05   20.5   0.0    2.6e-05   20.5   0.0    2.3  2  TIGR00631 uvrb: excinuclease ABC subunit B
    3.4e-05   20.8   0.8     0.0032   14.3   0.0    2.6  3  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0014   15.7   0.0     0.0014   15.7   0.0    2.5  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
     0.0055   12.9   0.0     0.0055   12.9   0.0    2.1  2  TIGR00580 mfd: transcription-repair coupling factor
  ------ inclusion threshold ------
        1.2    5.2  10.1        5.6    3.0   5.5    2.0  2  TIGR00596 rad1: DNA repair protein (rad1)


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.7       2.6   1.1e+03     358     401 ..      51      96 ..      24     129 .. 0.47
   2 ?    1.2   0.0     0.066        27      13      48 ..     162     197 ..     151     203 .. 0.82
   3 !   41.8   0.0   3.1e-14   1.3e-11     229     349 ..     407     530 ..     372     541 .. 0.89

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 2.6
   TIGR00614 358 lekvekyensskCRRli.llsyfeekql.kkasskkgteksCdnCk 401
                  ek++  e+ ++ +R+    + f++++  ++  +k+ + +s d  +
  MMETSP1061-20121228|4592_1  51 AEKLDSEEHQNDIKRMRsYSKDFGDEKKdDEPNAKRRRTRSMDEAE 96 
                 2233333333333222202233433322022233344444444444 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.066
   TIGR00614  13 rpvqlevinavlegrdalvvmatGgGksLCyqlpav 48 
                  + q ++   ++eg+d + +  tG Gk   + lp  
  MMETSP1061-20121228|4592_1 162 SSIQAQAWPLAIEGKDLISIAKTGSGKTCGFLLPVF 197
                 56678888889*****************99988865 PP

  == domain 3    score: 41.8 bits;  conditional E-value: 3.1e-14
   TIGR00614 229 GiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslp...ksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdek 349
                  i++   + +++++a++L ++g a    h +  + +r++v + f    +++++at     G++  dv  v+ +++p     +e Y   +GR GR g k  ++ f++ +D +  + l+    + +
  MMETSP1061-20121228|4592_1 407 VIVFVAKKISCNDLANKLWEDGFAVDCLHGDRPQWERSKVMNAFKDGTLRMLIATDVAARGLDVKDVGVVVNFDMPagvNGVEDYVHRIGRTGRAGAKGLAHTFFTNGDRKCAQGLVQVLTKAE 530
                 489999999**********************************************9999*****************33335799**************************99999987766554 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.8         1   4.3e+02     478     509 ..      17      48 ..       8      78 .. 0.47
   2 ?   -3.8   0.0       1.7   6.9e+02      26      48 ..     173     195 ..     157     198 .. 0.81
   3 !   44.3   0.0   4.5e-15   1.8e-12     153     342 ..     333     525 ..     329     537 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1
   TIGR01389 478 ysalqleeavkkvlkeevevllrekkvvkkek 509
                  +al++e   + ++ ee++   +e++++k++k
  MMETSP1061-20121228|4592_1  17 KAALKKEAEKQGISYEEMKKKYKEDTNAKRKK 48 
                 34444444444444444444444443333333 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.7
   TIGR01389  26 ldgrdvlavlPtGGGkslCYqvP 48 
                 ++g+d++++  tG Gk   + +P
  MMETSP1061-20121228|4592_1 173 IEGKDLISIAKTGSGKTCGFLLP 195
                 7899************9888777 PP

  == domain 3    score: 44.3 bits;  conditional E-value: 4.5e-15
   TIGR01389 153 lgelaerfpkap.vialtatadaevredivekLelkdaaefvssfdRenlafsvvkkenkkkqlleylkkere.ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPkn...lesyyqeaGRaGRDGlkaeaillyseaDlallkrliee 342
                 + +la+ f ++p  i +        ++di++++++ +++e ++ ++   +  +++ ++  ++   +  +  +     i++ + +   ++la++L ++g+++   h+   + +R++  ++F     ++++at     G+d  dv  v+ +d+P+    +e y    GR GR G k  a +++++ D + ++ l++ 
  MMETSP1061-20121228|4592_1 333 IQRLAHDFLRDPvQINVGEVNALVANKDIKQTIHMINEEEKIDKLE--SILKELIADRAADDGKGRVANGGKAhAKVIVFVAKKISCNDLANKLWEDGFAVDCLHGDRPQWERSKVMNAFKDGTLRMLIATDVAARGLDVKDVGVVVNFDMPAGvngVEDYVHRIGRTGRAGAKGLAHTFFTNGDRKCAQGLVQV 525
                 6667777777776677777777778899999999999999888764..56666777776666666666666652456788999999******************************************************************7522379**************************9999988776 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   2.8e-14   1.1e-11       7     345 ..     153     500 ..     147     513 .. 0.74

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 2.8e-14
   TIGR04121   7 faargwe.prafQkevleaaeegesglliapTGaGKTlavflpslielaakekpk....kglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATv.gnleeaaevllgeekeekaklvkake..kkalevesllpeeeeklP.........waGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgv...aRllQRiGRsnH 345
                 ++a g+e p + Q +++  a eg++ + ia TG+GKT    lp+  + +++++ +    +   +l ++P + L ++i++  ++  + +g++       G +s+  + +  ++  + ++  p  l+ l+  ++    +++++ +v+DE   +l      +++      ++ a++ +++  sAT  ++++++a+  l++  + ++  v+a    k  ++ +++++e eek+           a   +     +v++  k++  ++vF+  +  +  l ++L+e        +   Hg   + +R+kv +a+k+g+lr++++T     G+D +dv  v++   p gv      + RiGR++ 
  MMETSP1061-20121228|4592_1 153 IKAAGFErPSSIQAQAWPLAIEGKDLISIAKTGSGKTCGFLLPVFHHHEKTRTGRsggfTKPILLVLAPTRELCVQISEESRKFGNPIGIRS--VCCYGGSSKYPQIQALQRGVECIIACPGRLNDLIEMRKC--DLSGIKYLVLDEADRMLDMGFEPQIRS--IVEKTNAETRQTLLFSATWpKEIQRLAHDFLRDPVQINVGEVNALVanKDIKQTIHMINE-EEKIDklesilkelIADRAADDGKGRVANGGKAHAKVIVFVAKKISCNDLANKLWED----GFAVDCLHGDRPQWERSKVMNAFKDGTLRMLIATDVAARGLDVKDVGVVVNFDMPAGVngvEDYVHRIGRTGR 500
                 566666437889***************************99999999996665553333334468889********9999999888887654..3456778888888999999**************988766..599**************9855555553..333455566678888***845677777766666654444444442200222333444544.33332111221111233444444557999999****************999999975....4558899*********************************************99876511167899****875 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.5e-10     6e-08      22     167 ..     146     297 ..     129     307 .. 0.83
   2 !   10.8   0.1   5.4e-05     0.022     317     379 ..     442     507 ..     384     515 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.5e-10
   TIGR03817  22 epdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp........ratalylaPtkalaadqlravkelee.rdvr.aatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdech 167
                 ++ ++++++aaG e+p + qa+a  la +G++ +  + t sGk+ ++llPv+   ++ +        +   l laPt+ l+       +++ +  ++r +++y G ++  + + ++   + +++ P  l   i          l  ++y+v+de+ 
  MMETSP1061-20121228|4592_1 146 SDRIQRTIKAAGFERPSSIQAQAWPLAIEGKDLISIAKTGSGKTCGFLLPVFHHHEKTRtgrsggftKPILLVLAPTRELCVQISEESRKFGNpIGIRsVCCYGGSSKYPQIQALQRGVECIIACPGRLNDLIEMRK----CDLSGIKYLVLDEAD 297
                 5679999*********************************************9999885555555559999**********99999999998865665268899999999999999999999999998877553332....236677888888875 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 5.4e-05
   TIGR03817 317 drreleralkdGellgvaatnalelGvdisGldavviaGfPGtva...slwqqaGraGrrgqdalv 379
                 +r ++ +a+kdG+l+ + at+    G+d+  +  vv    P  v     +  ++Gr+Gr+g + l+
  MMETSP1061-20121228|4592_1 442 ERSKVMNAFKDGTLRMLIATDVAARGLDVKDVGVVVNFDMPAGVNgveDYVHRIGRTGRAGAKGLA 507
                 7889999*****************************988887665111567899999999999887 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.6e-08   6.5e-06     289     541 ..     218     489 ..     183     531 .. 0.60

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.6e-08
   TIGR00643 289 lmaPTeiLAeQhyeklrelleplgievalLt.gslkkkkkkelleeiasGeielvvGT....hall.qekvefkeLalviiDEQhr...FGve.QRkkLrekgkekiaphvLvmsAT.P..IPRtlA...ltvygdldvsiidelPlGrkpitt.klikekekdkvyevveeeikkgrqvyvvyplieeseklelk.....aaealleelkkaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmvied..aeRfGls 541
                 ++aPT  L  Q  e+ r++ +p+gi+      gs+k      + ++++ G +e ++        l+ + k +++ +++ + DE  r    G e Q + + ek++++ + ++L++sAT P  I R lA   l    +++v  ++ l + +   +t ++i+e+ek   +e + +e+ ++r +     ++ +  k ++k     a +  +++l +++    ++v+ lhg  ++ e+ +v+++F+++++ +L+aT v   G+dv ++ v+v  d  a   G+ 
  MMETSP1061-20121228|4592_1 218 VLAPTRELCVQISEESRKFGNPIGIRSVCCYgGSSKYP----QIQALQRG-VECIIACpgrlNDLIeMRKCDLSGIKYLVLDEADRmldMGFEpQIRSIVEKTNAE-TRQTLLFSATwPkeIQR-LAhdfLRDPVQINVGEVNALVANKDIKQTiHMINEEEKIDKLESILKELIADRAADDGKGRVANGGKAHAKvivfvAKKISCNDLANKLweDGFAVDCLHGDRPQWERSKVMNAFKDGTLRMLIATDVAARGLDVKDVGVVVNFDmpAGVNGVE 489
                 56777777777777777777777775443330333333....33344444.2344433011122331235566777777777777733335544656666666644.67777777773222333.44122223345677777777777765544255566666444555556666666666666666666666444111113334466677776657799******************************************99998654214444444 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.8   5.2       5.7   2.4e+03     578     637 ..      26      72 ..       8     122 .. 0.50
   2 !   20.5   0.0   6.4e-08   2.6e-05     435     541 ..     396     500 ..     353     516 .. 0.83

  Alignments for each domain:
  == domain 1    score: -5.8 bits;  conditional E-value: 5.7
   TIGR00631 578 ehgitPktikkkikeilekkekekekeakkkkkkaaeeaeklsekelkklikklekemke 637
                 ++gi+ +++kkk ke +++k+k             ++eaekl ++e ++ ik++++  k+
  MMETSP1061-20121228|4592_1  26 KQGISYEEMKKKYKEDTNAKRK-------------KTEAEKLDSEEHQNDIKRMRSYSKD 72 
                 3334444444433333333222.............2233333344444444443333332 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 6.4e-08
   TIGR00631 435 eirervaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraar 541
                 ++ +  + + +v+v +  k  ++dl++ l e g  v  lh +    er ++++ +++g++ +l+  ++   GlD+ +v +v  +D    G +   +  +  iGr  r
  MMETSP1061-20121228|4592_1 396 RVANGGKAHAKVIVFVAKKISCNDLANKLWEDGFAVDCLHGDRPQWERSKVMNAFKDGTLRMLIATDVAARGLDVKDVGVVVNFDMPA-G-VNGVEDYVHRIGRTGR 500
                 55566667788888887777789**********************************************************9988432.2.2233344555555554 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.4       2.3   9.4e+02     218     291 ..      52     128 ..      47     140 .. 0.55
   2 !   14.3   0.0   7.9e-06    0.0032      19      92 ..     168     255 ..     148     269 .. 0.77
   3 !    4.5   0.0    0.0076       3.1     319     359 ..     434     474 ..     354     508 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.3
   TIGR04095 218 etdeYveltekiskllakeeeeeseasealkaLLikRarligsaenklkaL..kkllskre.eesktlvYcgdgkte 291
                 e+   +e  + i+++ + +++  +e+++       +R+r +++ae+k ++   +k l+  e ++++t+   g+gk +
  MMETSP1061-20121228|4592_1  52 EKLDSEEHQNDIKRMRSYSKDFGDEKKDDEPNAKRRRTRSMDEAEEKKAKAeaEKNLTPDEwRKEQTITLRGHGKYT 128
                 55555556666666666666444444444444556888888888877654311334444331344666666666665 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 7.9e-06
   TIGR04095  19 aW.fknngrGilkma.tGtGktltaLalvsklaekik........slvvvvvvPykhLveqWakeaekFg....lepilayesvsrWq 92 
                 aW ++ +g+ ++++a tG+Gkt   L  v + +ek++        + +++v++P ++L+ q ++e +kFg    ++ + +y+++s++ 
  MMETSP1061-20121228|4592_1 168 AWpLAIEGKDLISIAkTGSGKTCGFLLPVFHHHEKTRtgrsggftKPILLVLAPTRELCVQISEESRKFGnpigIRSVCCYGGSSKYP 255
                 45346689999999879*********999888665531122222256899*******************6444478899999988874 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0076
   TIGR04095 319 ftaeeskeeReellkqfesgelqalvairCLDeGvDvPair 359
                      +++eR+++++ f++g+l  l+a      G+Dv ++ 
  MMETSP1061-20121228|4592_1 434 LHGDRPQWERSKVMNAFKDGTLRMLIATDVAARGLDVKDVG 474
                 55667899*********************999999998765 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.9       1.4   5.5e+02     169     216 ..      20      70 ..      17      79 .. 0.59
   2 !   15.7   0.0   3.4e-06    0.0014     127     301 ..     290     478 ..     278     508 .. 0.60

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.4
   TIGR01587 169 lkeylekielveenealdlke...ekrfenqrisliekdkleeisslerll 216
                 lk+++ek ++  e+   ++ke   +kr++ + ++l  ++ +++i+ +   +
  MMETSP1061-20121228|4592_1  20 LKKEAEKQGISYEEMKKKYKEdtnAKRKKTEAEKLDSEEHQNDIKRMRSYS 70 
                 667777777766666666666344555555555566666666666655444 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 3.4e-06
   TIGR01587 127 vliiDEvhayeeytkal.llallevlkdvdvkillmsAtlpkllkeylekielveenealdlke...............ekrfenqrisliekdkleeisslerlle.............alkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDi.svdvlit 301
                  l++DE++ + +   +  +  ++e       + ll sAt pk +++++++   +  +  +   +               +          +e+++++ +s+l++l++               k+++kv+++v        l +kl e++ +  ++ lH+   + +r     ++++ +k+   ++++aT v+  +lD+ +v+v++ 
  MMETSP1061-20121228|4592_1 290 YLVLDEADRMLDMGFEPqIRSIVEKTNAETRQTLLFSATWPKEIQRLAHDFLRDPVQINVGEVNalvankdikqtihmiN----------EEEKIDKLESILKELIAdraaddgkgrvanGGKAHAKVIVFVAKKISCNDLANKLWEDGFA--VDCLHGDRPQWER----SKVMNAFKDGTLRMLIATDVAARGLDVkDVGVVVN 478
                 59*****97766655555*********99999*********888888887765433333332234565433333443442..........3444444455555553310000000000003333444444444444444444444444444..8888885555554....456999********************966777665 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   2.5      0.57   2.4e+02      95     163 ..      33     105 ..       3     167 .. 0.40
   2 !   12.9   0.0   1.3e-05    0.0055     688     763 ..     432     509 ..     428     527 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.57
   TIGR00580  95 ktek...ealkegkkkaglekllpllfee.lsslldelkdetlilldepekvekaaeelereleefleaalea 163
                 +++k   e ++ ++kk++ ekl +   ++    + ++ kd     +d+  +++++ ++  +e ee +++a+++
  MMETSP1061-20121228|4592_1  33 EMKKkykEDTNAKRKKTEAEKLDSEEHQNdIKRMRSYSKDFGDEKKDDEPNAKRRRTRSMDEAEEKKAKAEAE 105
                 1111111111111111112222221111112222222222222111122222222222222222222222222 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.3e-05
   TIGR00580 688 aiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiier..AdkfGlaqLyQLrGRvGRskkkayayl 763
                    Hg   + e  +vm++F++++  +L++T +   G+d+ ++  ++  +  A   G+ +     GR GR   k+ a+ 
  MMETSP1061-20121228|4592_1 432 DCLHGDRPQWERSKVMNAFKDGTLRMLIATDVAARGLDVKDVGVVVNFDmpAGVNGVEDYVHRIGRTGRAGAKGLAHT 509
                 567999999999******************************987765444888899998888899999999876653 PP

>> TIGR00596  rad1: DNA repair protein (rad1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   5.5     0.014       5.6     335     396 ..      44     105 ..      14     155 .. 0.70
   2 ?    2.2   0.0     0.024       9.7     256     315 ..     358     424 ..     344     440 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.014
   TIGR00596 335 yrkqreklkkl.akevkkkeaakenassrvnktlrkekvaskrrrvrgakeaaveklreeetd 396
                  ++++ + +kl ++e ++  ++ +  s++   +++ +++  krrr+r+++ea  ek+ ++e++
  MMETSP1061-20121228|4592_1  44 AKRKKTEAEKLdSEEHQNDIKRMRSYSKDFGDEKKDDEPNAKRRRTRSMDEAE-EKKAKAEAE 105
                 22333445555566666666677777788999999999*************99.444444432 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.024
   TIGR00596 256 egeeekkelvleeqPkWevLtdvLkeieael.......resereesngkvlilcaDertClqLrdyl 315
                 + ++++++ +++e+ k ++L  +Lke+ a+        r ++  + ++kv++  a +  C++L++ l
  MMETSP1061-20121228|4592_1 358 NKDIKQTIHMINEEEKIDKLESILKELIADRaaddgkgRVANGGKAHAKVIVFVAKKISCNDLANKL 424
                 556778888999999***********99987666665566667777889*************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       360  (0.0877621); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.18s 00:00:00.74 Elapsed: 00:00:00.51
# Mc/sec: 1563.17
//
Query:       MMETSP1061-20121228|4595_1  [L=1256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.13s 00:00:00.65 Elapsed: 00:00:00.47
# Mc/sec: 3527.20
//
Query:       MMETSP1061-20121228|4597_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1236.53
//
Query:       MMETSP1061-20121228|4598_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 700.12
//
Query:       MMETSP1061-20121228|4598_2  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 805.13
//
Query:       MMETSP1061-20121228|4599_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|4593_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2309.81
//
Query:       MMETSP1061-20121228|4603_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 562.69
//
Query:       MMETSP1061-20121228|4610_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 772.14
//
Query:       MMETSP1061-20121228|4606_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 2301.56
//
Query:       MMETSP1061-20121228|4611_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2602.07
//
Query:       MMETSP1061-20121228|4607_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2686.92
//
Query:       MMETSP1061-20121228|4612_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-11   40.6   0.0    1.3e-05   22.1   0.0    2.1  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    1.6e-09   34.8   0.0    6.3e-06   22.9   0.0    2.1  2  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    1.6e-09   35.0   0.1    0.00037   17.4   0.0    2.2  2  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    1.6e-06   25.1   0.0     0.0011   15.7   0.0    2.1  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    7.6e-06   23.6   0.0      0.054   11.0   0.0    2.2  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0018   15.0   0.0      0.011   12.3   0.0    1.9  2  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
     0.0028   14.5   0.0       0.14    8.9   0.0    2.1  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase
  ------ inclusion threshold ------
      0.017   11.7   0.1      0.045   10.3   0.0    1.6  2  TIGR02028 ChlP: geranylgeranyl reductase


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.1e-06   0.00057     138     187 ..      13      63 ..       2      69 .. 0.75
   2 !   22.1   0.0   2.5e-08   1.3e-05     272     318 ..     219     265 ..     171     283 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.1e-06
   TIGR01988 138 esdaveltlsdgetleakLlvgADGanSkvrqaa.gikttewnyeqsavva 187
                 +++   ++l+dg+++ a  ++gADG+ S+vr+++ + ++t    +  a+v+
  MMETSP1061-20121228|4612_1  13 NNKGLWVELNDGSRIPATHVIGADGKWSNVRRTVpSFSATLVTCPSAAIVM 63 
                 4667789************************98723445555555555555 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 2.5e-08
   TIGR01988 272 akryvaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeaver 318
                 a +  + rv liGdAAh +   +GQG N  l+ + +L ++l+ + ++
  MMETSP1061-20121228|4612_1 219 AYSSEDGRVSLIGDAAHAMTASTGQGCNTALESAVELFDHLVGTLRE 265
                 55556789******************************999866554 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00011     0.057     124     165 ..       5      46 ..       1      59 [. 0.87
   2 !   22.9   0.0   1.2e-08   6.3e-06     299     338 ..     224     263 ..     212     285 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00011
   TIGR03219 124 kkaksieeqaeevevsfedGteyradlligadGiksalrdyv 165
                 ++ ++ +++++ + v+++dG+   a  +igadG  s +r +v
  MMETSP1061-20121228|4612_1   5 ENENDENKNNKGLWVELNDGSRIPATHVIGADGKWSNVRRTV 46 
                 556677889999***************************988 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.2e-08
   TIGR03219 299 hGrvaliGdaahamlphqGaGaGqGledayllarlledtk 338
                 +Grv liGdaaham    G G    le a  l   l  t 
  MMETSP1061-20121228|4612_1 224 DGRVSLIGDAAHAMTASTGQGCNTALESAVELFDHLVGTL 263
                 7****************************97754443333 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.6e-06    0.0013     153     207 ..      10      65 ..       2      71 .. 0.76
   2 !   17.4   0.0   7.2e-07   0.00037     333     368 ..     225     260 ..     212     274 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.6e-06
   TIGR01989 153 pndnsnlvkikledgetlktklliGADGanSkvRkaan.ikvtgwnYnqsavvatl 207
                 +n+n++   ++l+dg+ + +  +iGADG+ S+vR+++   + t    +  a+v tl
  MMETSP1061-20121228|4612_1  10 ENKNNKGLWVELNDGSRIPATHVIGADGKWSNVRRTVPsFSATLVTCPSAAIVMTL 65 
                 45566667799************************985145555566777777776 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 7.2e-07
   TIGR01989 333 ervALvGDAAHrvHPLAGqGvNlGfsDvesLvkala 368
                  rv L+GDAAH +    GqG N+ ++ +  L  +l 
  MMETSP1061-20121228|4612_1 225 GRVSLIGDAAHAMTASTGQGCNTALESAVELFDHLV 260
                 49*********************9999888888775 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0   0.00069      0.35     134     168 ..      12      46 ..       2      65 .. 0.84
   2 !   15.7   0.0   2.2e-06    0.0011     275     314 ..     224     263 ..     215     303 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00069
   TIGR01984 134 rekdeaevkldneqkleakLlvaAdGanskvresl 168
                 ++++   v+l+++ ++ a  ++ AdG+ s+vr+ +
  MMETSP1061-20121228|4612_1  12 KNNKGLWVELNDGSRIPATHVIGADGKWSNVRRTV 46 
                 45566889***********************9975 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.2e-06
   TIGR01984 275 kervvlignaAqtlhPiAgQGfNlGlrDvltLaevledar 314
                 + rv lig+aA+ +    gQG N  l  +++L ++l+   
  MMETSP1061-20121228|4612_1 224 DGRVSLIGDAAHAMTASTGQGCNTALESAVELFDHLVGTL 263
                 689******************************9997654 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0    0.0001     0.054     118     173 ..      11      64 ..       2      85 .. 0.67
   2 !   10.5   0.0   0.00015     0.079     260     290 ..     222     252 ..     187     253 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.0001
   TIGR02032 118 eiedekvkvevredekkevtakivigAdGakskvakklg.lkkekrelavalraeve 173
                   +++  +ve++++    + a +vigAdG+ s v++ ++ +     +++ ++ + ++
  MMETSP1061-20121228|4612_1  11 NKNNKGLWVELNDG--SRIPATHVIGADGKWSNVRRTVPsFS-ATLVTCPSAAIVMT 64 
                 33337778888876..689*****************999555.45555555544444 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00015
   TIGR02032 260 tvtgnvllvGDAAglVkPltGeGIayamvag 290
                 +  g+v l+GDAA    + tG G ++a++++
  MMETSP1061-20121228|4612_1 222 SEDGRVSLIGDAAHAMTASTGQGCNTALESA 252
                 5668899*********************997 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.12        63     139     171 ..      16      48 ..       3      54 .. 0.80
   2 !   12.3   0.0   2.2e-05     0.011     277     323 ..     223     269 ..     206     279 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.12
   TIGR02360 139 vtfekdgeekrldcdfiaGcdGfhGvsrksipa 171
                   + + ++  r+   +++G+dG     r+++p+
  MMETSP1061-20121228|4612_1  16 GLWVELNDGSRIPATHVIGADGKWSNVRRTVPS 48 
                 456666777899999****************96 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.2e-05
   TIGR02360 277 ryGrlflaGdaahivpptGakGlnlaasdvaylyealleaykekdsa 323
                 + Gr+ l Gdaah +  +  +G n+a      l++ l+ + +e d++
  MMETSP1061-20121228|4612_1 223 EDGRVSLIGDAAHAMTASTGQGCNTALESAVELFDHLVGTLRESDTK 269
                 569**************999***************999998887765 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.011       5.8     143     163 ..      28      48 ..      15      66 .. 0.84
   2 !    8.9   0.0   0.00028      0.14     249     291 ..     210     252 ..     191     284 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.011
   TIGR02023 143 eadvviGaDGakskvakelgl 163
                  a  viGaDG  s+v ++++ 
  MMETSP1061-20121228|4612_1  28 PATHVIGADGKWSNVRRTVPS 48 
                 5789***********998875 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00028
   TIGR02023 249 eaapiPlkPrkrldservvLvGDaaGlvakasGeGiyyamksG 291
                 eaa+       + +++rv L+GDaa  ++ ++G G   a++s 
  MMETSP1061-20121228|4612_1 210 EAANGAASVAYSSEDGRVSLIGDAAHAMTASTGQGCNTALESA 252
                 5555555556677899*******************99998886 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.5   2.6e+02     151     166 ..      31      46 ..      26      50 .. 0.86
   2 ?   10.3   0.0   8.8e-05     0.045     270     313 ..     225     268 ..     205     301 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.5
   TIGR02028 151 avigadgansrvakei 166
                  vigadg  s v + +
  MMETSP1061-20121228|4612_1  31 HVIGADGKWSNVRRTV 46 
                 69********999877 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 8.8e-05
   TIGR02028 270 grvalvgdaagyvtkssgegiyfaaksgrlcaeaiveesrlgkk 313
                 grv+l+gdaa  +t s+g+g   a  s+    + +v + r++  
  MMETSP1061-20121228|4612_1 225 GRVSLIGDAAHAMTASTGQGCNTALESAVELFDHLVGTLRESDT 268
                 8***********************99998887888877776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 1820.35
//
Query:       MMETSP1061-20121228|4617_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 257.69
//
Query:       MMETSP1061-20121228|4618_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 777.27
//
Query:       MMETSP1061-20121228|4619_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 803.41
//
Query:       MMETSP1061-20121228|4615_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-64  215.3   1.2    3.2e-56  188.4   0.5    2.1  2  TIGR00465 ilvC: ketol-acid reductoisomerase


Domain annotation for each model (and alignments):
>> TIGR00465  ilvC: ketol-acid reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.4   0.5   7.9e-60   3.2e-56       4     279 ..     104     396 ..     102     428 .. 0.87
   2 !   25.3   0.0   3.6e-10   1.5e-06     187     261 ..     437     512 ..     434     537 .. 0.86

  Alignments for each domain:
  == domain 1    score: 188.4 bits;  conditional E-value: 7.9e-60
   TIGR00465   4 kkvaiiGyGsqGeaqalnlrds......glnvivglrkeaaswkkAeedGf.....kvltveeaikkadlimiLlpDevqkevyeaeikpllkegkallfsHGfnivfkq...ivipkdvdvvlvAPKgpGalvReeykegr.....GvpsliAveqdvtgeakeiAlayAkaiGgaragvlettFkeEvesDLfGEqavLcGglealikaafdtLveaGyqpelAyfeivhel.klivdllkekGlelmrdavsntAklgalelreilkeelkkemqkilkeiqnGefakewale 279
                 k+v++iG+Gsq  aqa n+ ds       ++v++glr++++s+++A+  Gf      + ++ ++ik++dl+m L++D++q + y++ i   +k g++l+ sHGf + + +   ++ p+d+dv+ v PKg G  vR+ y++g+     G+++++Av+q+++g+a+e Al++ +a+G+    ++ett + E  sD++GE+++L+G ++++++  +    ++G + e A+ +  + +   iv+++  +G++ +++ +s+  k    +++    +  k+ +q+i++e+ +G++ +  ++ 
  MMETSP1061-20121228|4615_1 104 KQVGVIGWGSQAPAQAQNMMDSleeagaDIKVVIGLREGSSSFEEAKAVGFseeegTLGEMFDVIKNSDLVMLLISDAAQAKLYKE-IFAAMKPGATLGLSHGFLLGYLDsigEKFPDDMDVIAVCPKGMGPSVRRLYEQGKevngaGINASFAVHQNASGKATELALGWGVAVGSP--FMFETTLRSEYCSDIYGERGILLGAVHGIVESLYRRYQRQGMSAEDAFLNSSESItGNIVKIISTQGIKAVYEGLSDEDKKVFQTAYSASYKPSKEILQEIYDEVSSGNEIRTVIMH 396
                 79******************986666556999**************9988733333589999****************99988877.*****************99987522256***********************9864333339****************************9..99************************************************99999789*********************9999999999999*****************99866554 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 3.6e-10
   TIGR00465 187 GglealikaafdtLveaGyqpelAyfeivhel.klivdllkekGlelmrdavsntAklgalelreilkeelkkemq 261
                 G   a + a+ d+L e+G+  ++  +e v e+ +++ + ++++G++ m+d++s tAk g+ ++++ ++  l +  +
  MMETSP1061-20121228|4615_1 437 GVYVATMMAQIDVLLEEGHPYSEVVNESVIEAvDSLCPYMHYRGVAFMVDNCSFTAKTGSRKWAPRFDYILDQLAY 512
                 5556788999**********9999999888876******************************9999887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 2067.83
//
Query:       MMETSP1061-20121228|4623_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 513.29
//
Query:       MMETSP1061-20121228|4620_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2468.69
//
Query:       MMETSP1061-20121228|4626_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 675.78
//
Query:       MMETSP1061-20121228|4628_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 559.38
//
Query:       MMETSP1061-20121228|4627_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 359.01
//
Query:       MMETSP1061-20121228|4625_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.11s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 3249.66
//
Query:       MMETSP1061-20121228|4624_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-226  750.0   0.8   3.1e-226  749.7   0.5    1.0  1  TIGR00962 atpA: ATP synthase F1, alpha subunit
   2.6e-169  561.9   2.6   3.3e-169  561.5   1.8    1.0  1  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
    3.5e-61  205.0   0.9    4.2e-61  204.7   0.6    1.1  1  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    3.3e-54  182.1   1.1    4.6e-54  181.6   0.7    1.1  1  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    1.2e-52  176.9   1.6    1.6e-52  176.5   1.1    1.1  1  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    6.4e-52  174.7   0.2    8.1e-52  174.4   0.1    1.1  1  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    1.4e-51  173.3   1.7    1.8e-51  172.9   1.2    1.1  1  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
      3e-37  126.0   1.6    4.3e-37  125.4   1.1    1.2  1  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
      2e-30  103.8   0.5    2.5e-30  103.5   0.4    1.1  1  TIGR01039 atpD: ATP synthase F1, beta subunit
    1.7e-29  100.7   0.2    2.1e-29  100.3   0.2    1.1  1  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
    3.7e-28   96.1   0.2    8.4e-28   94.9   0.1    1.5  1  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
    5.5e-24   82.3   3.7      5e-17   59.3   0.0    2.1  2  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    4.6e-20   69.6   4.3    8.5e-15   52.2   0.1    2.4  2  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
    0.00026   17.8   0.1    0.00045   17.0   0.1    1.3  1  TIGR00767 rho: transcription termination factor Rho


Domain annotation for each model (and alignments):
>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  749.7   0.5  1.1e-228  3.1e-226      19     501 ..      54     537 ..      35     539 .. 0.98

  Alignments for each domain:
  == domain 1    score: 749.7 bits;  conditional E-value: 1.1e-228
   TIGR00962  19 ekeieaeevGtvvsvadGiakveGlenvlskeliefeggvkgialnleedsvGvvilGdyseikeGsevkrtgevlevpvGdallGrvvnalGepidGkGdieseefsavekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaidtiinqkdskkdvkcvyvaiGqkestvaqvvekleekgaleytivvaasasdsaslqylaPyagvalaeyfrdkgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrlleraaklsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsrvGgaaqikaikkvaGslrlelaqyreleafsqfasdldeatkkqlerGkrlvellkqeqskPlsveeqvvilyavtkgylddipvekvakfeeelleyldkekkelleeikkkk.klteeleeklkevleefkkkf 501
                 ++ ++ +e+G v+sv+dGia+v+Gl+nv ++e++ f  g +g+alnleed+vGvvi+Gd  +i eG++v rtg +++vpvG +llGrvv+ +G+pidG   +++ ++s+ e+kaPg+i r+sv+eP+ tG+ka+daliPiGrGqreliiGdrqtGkta+aidtiinqk +k+ + c+yv +Gqk+st+aq+v +l+e+ga+++ i+vaa+asdsa lq+laPy+g+a++eyfrd+gk+a+i yddlskqavayrq+slllrrPPGreayPGdvfylhsrlleraak++ + G+GsltalP+ietqagdvsayiPtnvisitdGqifles+lf++G+rPai vGlsvsrvG+aaq ka+k vaG+ +lelaqyre++af++f+sdld+at++ql+rG rl ellkq q++P   ee v++l+++ kgy d +pve++++fe++ l+++++ +++++++i + + +l  ++e++l ++ e+f+ ++
  MMETSP1061-20121228|4624_1  54 DSAVQYAETGSVISVGDGIARVYGLSNVQAGEMVVFACGLRGMALNLEEDNVGVVIFGDDRDILEGDNVTRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDNVKRSRAEAKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKKEPLACIYVGVGQKRSTIAQLVGQLDERGAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDSGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNTALGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGAAAQYKATKAVAGTTKLELAQYREVAAFAKFGSDLDAATQQQLNRGVRLYELLKQGQYEPQEPEEVVASLFVGVKGYCDRVPVENIQDFEKAWLTHMKTAQSSVMKKIVDAGyALPADVEAELAKCAEDFTSAY 537
                 5678899*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************9988753799*********999998876 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  561.5   1.8  1.1e-171  3.3e-169      11     477 ..      45     513 ..      37     532 .. 0.97

  Alignments for each domain:
  == domain 1    score: 561.5 bits;  conditional E-value: 1.1e-171
   TIGR03324  11 eleearesaapelalkevGtvesvskGiakvsGlpgvgveellkfpGdllGiafnvdedevGvvllgeysklqaGdevertgrvldvpvGdellGrvvdplGrpldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGktaiaidtilnqkdkn..vlcvycaiGqrasavakvvaelrekgaldytivvvtegndppGlqyiapyaatsiaeyfmeqGrdvlivyddltkharayrelslllrrppGreafpGdifyvhsrllersthlrkerGGGsltalpiieteaqnisayiptnlisitdGqiylspelfelGvlpavdvGksvsrvGGkaqlaayravaGdlklayaqfeeleafarfgarldeetrkvierGrrirailkqtessplsvaeqivillalseelfdaveldklseaekaisaavtelpadlvekles 477
                 ++  a  +  + ++  e G+v sv  Gia+v Gl +v+  e++ f+ +l G+a+n++ed+vGvv++g+  ++  Gd+v rtg ++dvpvG ellGrvvd +G+p+dg+ +l++ kr   e +ap i+ r++v++p+ tGlk vdalipiGrGqreli+GdrqtGktaiaidti+nqk k+  + c+y  +Gq+ s++a++v +l e+ga+d  i+v +   d + lq++apy+ ++++eyf + G+  +i yddl+k a ayr++slllrrppGrea+pGd+fy+hsrller+++++ + GGGsltalp+iet+a ++sayiptn+isitdGqi+l  elf +G  pa+ vG svsrvG  aq  a +avaG  kl  aq+ e+ afa+fg+ ld++t++ ++rG r+ ++lkq + +p   +e +++l+   ++  d v+++++++ eka    ++   + +++k+ +
  MMETSP1061-20121228|4624_1  45 KIGAAAGAEDSAVQYAETGSVISVGDGIARVYGLSNVQAGEMVVFACGLRGMALNLEEDNVGVVIFGDDRDILEGDNVTRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDNVKRSRAEAKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKKepLACIYVGVGQKRSTIAQLVGQLDERGAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDSGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNTALGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGAAAQYKATKAVAGTTKLELAQYREVAAFAKFGSDLDAATQQQLNRGVRLYELLKQGQYEPQEPEEVVASLFVGVKGYCDRVPVENIQDFEKAWLTHMKTAQSSVMKKIVD 513
                 56777888899999******************************************************************************************************************************************************************97653489***************************************************************************************************************************************************************************************************************************************************************************999999888899888765 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.7   0.6   1.4e-63   4.2e-61       6     419 ..      62     474 ..      57     478 .. 0.90

  Alignments for each domain:
  == domain 1    score: 204.7 bits;  conditional E-value: 1.4e-63
   TIGR02546   6 lgrvtevsgtllkav.lpearvgelclikekekeseleaevvgfeedealLsplgelsglslgseviplgrplsikvgeelLGrvldglGrpldgkkelkakeikkrpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstL.lsmiargakad...vivlaLiGeRGRevrefiekelgeekrkrsvlvvstsdrsslerlkaayvataiaeyfRdqgkkvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGasek....GsitalYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlkkvvskehkkaaaklrellakykevellirlGeYkkGsdkeaDkaikkldeikkflrqsldekssyeetleqle 419
                 +g v +v   + ++  l +++ ge++  +       l+   + +eed++ ++ +g+ +++ +g +v+ +g   ++ vg elLGrv+dg+G+p+dg  +l++++ +     a++P  + R+ +++p+ +G++a+D+l+ +g+GqR  i ++  +Gk+++ + +i+++++      ++ + +G +   +   + +  +  +++ +++v++t+  s+  +  a y++ a+ eyfRd gk+ +++ D l++ a a r+++L    pp r+ yp  vf   +rlleRa + ++    Gs+tal  + ++  d++  i  +v si DG i+L  +l  +++ Pai v  s+sRv  +   k  k+ a++ +  la+y+ev  + + G      d+++ + +++  ++ + l+q + e  ++ee++++l 
  MMETSP1061-20121228|4624_1  62 TGSVISVGDGIARVYgLSNVQAGEMVVFA-----CGLRGMALNLEEDNVGVVIFGDDRDILEGDNVTRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDNVKRS--RAEAKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIaIDTIINQKTKKeplACIYVGVGQKRSTIAQLVGQLDERGAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDSGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNTalggGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGAAAQYKATKAVAGTTKLELAQYREVAAFAKFGS---DLDAATQQQLNRGVRLYELLKQGQYEPQEPEEVVASLF 474
                 56666666666666523467777777766.....456666788999**************************************************999999755..899**********************************************98466777764322122677788999999*******999999*************************************************************************************9876445559************************************************************************************99996...679999999************************99985 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.6   0.7   1.6e-56   4.6e-54       8     409 ..      70     471 ..      63     474 .. 0.87

  Alignments for each domain:
  == domain 1    score: 181.6 bits;  conditional E-value: 1.6e-56
   TIGR03496   8 glvleavgl.kasvgelveieeeegesveaevvgfeeeklllmpleeveglalgakvvlleeekklpvgeellGrvidalgepldgkgaleaeeevsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvGKsvL.lgml.aratead...vvvvaLiGERgREvkefieknLgeeglkrsvvvaatadespllrlraaalataiaeyfrdqgkdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGngkeg..kGsitafytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvmkkvvseehlkaarklkqllsryeenrdlisigaYkkGsdpelDeaiklvpklekflqqeveekvsleesle 409
                   + ++ gl +++ ge+v +    +  ++++ +++ee+++ ++ + + +++  g++v+ + +   +pvg ellGrv+d+ g+p+dg ++l++ ++ ++ea+++  + re ++e++ +G++a++al+++g+Gqr  ++     GK+ + +  +  ++t+ +   ++ v+ +G +   + +++ +  ++ +++++++vaata +s+ l+  a ++  a+ eyfrd gk+ +++ D l++ A A R+++l +  pp   +Yp  vf   ++L+Era + ++    Gs+ta+  + ++  d +  i  ++ +i DG i L+ el  +g+ Pai +  S+SRv  ++  ++++++a + k  l++y+e+  + + g+     d+++ + +++  +l+++l+q+  e ++ ee ++
  MMETSP1061-20121228|4624_1  70 DGIARVYGLsNVQAGEMVVF----ACGLRGMALNLEEDNVGVVIFGDDRDILEGDNVTRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDNVKRSRAEAKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIaIDTIiNQKTKKEplaCIYVG-VGQKRSTIAQLVGQLDERGAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDSGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNTAlgGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGAAAQYKATKAVAGTTKLELAQYREVAAFAKFGS---DLDAATQQQLNRGVRLYELLKQGQYEPQEPEEVVA 471
                 55555555545556666655....445689999***************************************************************************************************************865244441333333311155555.788888999999987777889************************************************************************************98654449*******************************************************************************99998888775...55666666666666677777887777777666655 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.5   1.1   5.5e-55   1.6e-52      60     434 ..      93     472 ..      49     475 .. 0.87

  Alignments for each domain:
  == domain 1    score: 176.5 bits;  conditional E-value: 5.5e-55
   TIGR01026  60 vvaevvgfegekvllmpyeevegveagskvlaknealsvkvgegllGrvldalGkplDekgkaldnveke.litapinPlkrakieevlstGvrsidalltvgkGqrlGifaGsGvGkstLl..Gmiar.ateadvnvial.iGerGrevkefiekdLgeeglkrsvvvvatsDespllrlkgayvataiaeyfrdqGkdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraG....asekGsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllkaivseekkkavrkfrellskykenedLiriGaYkkGsdkelDkaikkleklerflkqdieekvnfeeslqe 434
                 ++++ + +e+++v ++ + +   + +g++v+ +++ ++v+vg +llGrv+d++G+p+D+ + +ldnv+++    + +  + r+ ++e + tG +++dal+++g+Gqr  i      Gk ++    +i + +++ ++  i + +G +   + + + +   +  + ++++v+at+ +s+ l+  + y++ a+ eyfrd Gk+ ++++D + + a a r ++L +  pP ++ y+  vf l ++llera     a + Gs+ta+  + ++  D++  i  +v +i DG i L+ +l+ +g+ Pai v  s+sr+  a   +  k+++ + +  l++y+e+    + G+     d+   + ++   +l + lkq++ e ++ ee +++
  MMETSP1061-20121228|4624_1  93 LRGMALNLEEDNVGVVIFGDDRDILEGDNVTRTGAIVDVPVGPELLGRVVDGIGQPIDGGA-SLDNVKRSrAEAKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAidTIINQkTKKEPLACIYVgVGQKRSTIAQLVGQLDERGAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDSGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAkmntALGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGAAAQYKATKAVAGTTKLELAQYREVAAFAKFGSDL---DAATQQQLNRGVRLYELLKQGQYEPQEPEEVVAS 472
                 6789999****************************************************98.778877775888888899**************************************9864325666624455677765548888888999888766677799**********************************************************************************9544445679***********************************************************************************99999765...4444455556666777888888888888887766 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   0.1   2.8e-54   8.1e-52      38     407 ..      97     471 ..      63     475 .. 0.87

  Alignments for each domain:
  == domain 1    score: 174.4 bits;  conditional E-value: 2.8e-54
   TIGR03497  38 vvgfkeekvlLmPleevegiapgslveatgkklavkvgkellGkvldglGepldekelvkkkeklpleaeppnplkrkrikdvlevgvkaidglltvGkGqrvGifagsGvGkstll..gmiarnakad.inviaL.vGerGrevrefiekdLgeeG.lkksvvvvatsdqpallrlkaalvataiaeyfrdqGkkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGksek....GsitglytvLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvmeeivseehkelaeklrellavykeaedlikigaykkgsnkkideaiekkekinkfLkqkidekvtfeetve 407
                  + ++e++v ++ +++ ++i  g+ v+ tg  + v+vg ellG+v+dg+G+p+d+ + +++ ++   ea++p  + r+ +++++ +g+ka+d+l+ +G+Gqr  i      Gk+++   ++i +++k + +  i + vG++   + +++  +L e G +   ++v+at+ ++a l+  a +++ a+ eyfrd Gk+ ++  D + + a a r+++l  + pP ++ y   vf l  +llera k ++    Gs+t+l  + +++ d+   i+  v +i DG i L++eL  +++ Pai+v  svsrv ++   +  k++a++ +  la y+e   + k g+     +++ ++ ++   ++ + Lkq++ e  + ee+v+
  MMETSP1061-20121228|4624_1  97 ALNLEEDNVGVVIFGDDRDILEGDNVTRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDNVKRSRAEAKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAidTIINQKTKKEpLACIYVgVGQKRSTIAQLVG-QLDERGaMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDSGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNTalggGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGAAAQYKATKAVAGTTKLELAQYREVAAFAKFGSDL---DAATQQQLNRGVRLYELLKQGQYEPQEPEEVVA 471
                 46789999999******************************************************************************************************9864336888888776355554437777777777665.677776378999*******************************************************************************9954333339*********************************************************************************9999998644...334444455555566778888888777777665 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.9   1.2   6.3e-54   1.8e-51       1     413 [.      63     472 ..      63     475 .. 0.88

  Alignments for each domain:
  == domain 1    score: 172.9 bits;  conditional E-value: 6.3e-54
   TIGR03498   1 GrvsevkgllvevaGlsaavrlGdlveieaeegkkvlaevvgleedevllmpfeslegvelgaavvveeealevrpeeswlGRvidalgepiDgkgalaegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstll..smlaraaaaDvvvial..vGeRGRevrefleddlgeeg.lkrsvvvvatsDesplmRrkaayvalaiaeyfRdqgkdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpG..aegkGsitglftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRlakkvlspeekklvkrlrallaryeetedlirlGayrkGsdaevDeavklvpkieeflkqekeeatsledafee 413
                 G+v +v + + +v Gls++ + G++v +        ++  ++leed+v ++ f + +++  g++v+ + + + v + +++lGRv+d +g+piDg  +l + ++   ++a++p  + R+ v+e++ tG++++d++++++rGqR  i      Gk+++   +++ ++++ +        vG +   + +++  +l e g ++  ++v at+ +s+ ++  a+y+  a+ eyfRd gk+ +++ D + + a a R+++l    pp    Y+  vf    rLLeRa     a g Gs+t+l  +  ++ d    +  +v +i DG i l+ +++ +g+ Pai+v  svsR+   ++ +++k++   ++  la+y+e++ + + G+     da+  + ++   +++e+lkq++ e+++ e+ +++
  MMETSP1061-20121228|4624_1  63 GSVISVGDGIARVYGLSNV-QAGEMVVFACGL----RGMALNLEEDNVGVVIFGDDRDILEGDNVTRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDNVKR-SRAEAKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAidTIINQKTKKEPLACIYvgVGQKRSTIAQLV-GQLDERGaMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDSGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMntALGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGAAAQYKATKAVAGTTKLELAQYREVAAFAKFGS---DLDAATQQQLNRGVRLYELLKQGQYEPQEPEEVVAS 472
                 7788899999999999876.999999887654....68889*****************************************************777776665.56699********************************************987522455555555543333312566656666666.55666553899*******99999999******************************************************************9763356899*******************************************************************************9999999886...566777777777778999999999999987777665 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.4   1.1   1.5e-39   4.3e-37      38     349 ..      94     403 ..      64     428 .. 0.92

  Alignments for each domain:
  == domain 1    score: 125.4 bits;  conditional E-value: 1.5e-39
   TIGR01041  38 rGqvldsseglvvvqvfegttgldkeatkvrflGetlklkvsedllGrilngsGepidgGpeivpderrdinGaalnpaareypeefiqtGisaidGlntlvrGqklpifsgsGlphnelalqiarqakvrgeesefavvfaalGitaeeanffkkdfektGaleravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvkGk..kGsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlm 349
                 rG  l+ +e+ v v +f   +++ +    v  +G  ++++v  +llGr+++g+G+pidgG ++ + +r   + +a     re  +e + tG+ a+d l  + rGq+  i+      +  +a+      + + +++ +a ++  +G ++  + ++  ++++ Ga++ ++++ + a d a  + ++p +  ++ ey+  + + h ++   dl+  + a r++s      pGr+ ypG ++   + l era +++ +   Gs+t +p++     d++  ip     it+Gqi+l+ el+ +G +p i v  s+sr+ 
  MMETSP1061-20121228|4624_1  94 RGMALNLEEDNVGVVIFGDDRDILEGDN-VTRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDNVKRSRAEAKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDT--IINQKTKKEPLACIYVGVGQKRSTIAQLVGQLDERGAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFR-DSGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNTAlgGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVG 403
                 89999999999999********988777.999*******************************99999999999999999***************************99999888877777654..3444566789**********************************************************96.899***************************************************9873357******************************************************85 PP

>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.4   8.7e-33   2.5e-30      45     406 ..      97     459 ..      68     499 .. 0.85

  Alignments for each domain:
  == domain 1    score: 103.5 bits;  conditional E-value: 8.7e-33
   TIGR01039  45 aqhlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepidekgevkkkeklsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGktvl.iqelinniakehsGlsvfaGvGertreGndlylelkesgvldkvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqeritstkk....gsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsrlldpevvGeehyevarevqeilqrykelqdiiailGldelseedklvverarkierflsqp 406
                 a +l +d v ++ ++    +  g +v+ tg+ ++vpvG e lGr+++ +G+pid   ++++ +++    kap +  +++ +e + tG+k +d l p+ +G +  + G    Gkt + i  +in+ +k+    ++++GvG++     +l  +l e g +d+  +v     +    ++   +tg ++ eyfrd+ ++  ++f d++ + + a  ++s ll r p    y   +     +l er +  ++    gs+t++  +   a d++   p+ + +  d+++ l+ +++ +G  pa+    s sr+ +++   +   +va   +  l +y+e+    a +G d l    ++ ++r  ++ ++l q 
  MMETSP1061-20121228|4624_1  97 ALNLEEDNVGVVIFGDDRDILEGDNVTRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDNVKRSRAEAKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIaIDTIINQKTKKEPLACIYVGVGQKRSTIAQLVGQLDERGAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDSGKHA-VIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNTalggGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGAAAQY-KATKAVAGTTKLELAQYREVAA-FAKFGSD-LDAATQQQLNRGVRLYELLKQG 459
                 6778999999999999999***********************************************************************************************76256677777888888899**********************************999999*****************99855.5788**************************9999999999999987665433348***********************************************99999998766554.4455788888888888988865.5667755.5666666777777777777764 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.3   0.2   7.3e-32   2.1e-29      39     403 ..      97     462 ..      63     500 .. 0.85

  Alignments for each domain:
  == domain 1    score: 100.3 bits;  conditional E-value: 7.3e-32
   TIGR03305  39 laqldakkvrgialtateglargmavkdsgaplkapvgkeilsrvfdvfgntidrreslkdvkwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihnlvsqeegv.slfcgigercregeelyremkeagvldntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriatteda....aitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstsklatpsivgerhyklarevrrvlaqyeelkdiiamlgleelskedrrvvararrlerfltqpfft 403
                 +++l++++v  + +   + +  g++v  +ga + +pvg e+l+rv+d +g++id   sl++vk      + p +  r s se + tg+ka+d l+p+ rg +  ++g    gkt +  + i n  +++e +  ++ g+g++     +l  ++ e g +dn ++v     +    +f   ++  +m eyfrd  k+ v+ + d++ +   a  ++s ll + p r  y   +    + l er a+ ++a    ++t++  +   a d +       +s     + l      +g  pai    s s++ + +   +    +a   +  laqy e+    a +g  +l +  ++ ++r  rl  +l q  + 
  MMETSP1061-20121228|4624_1  97 ALNLEEDNVGVVIFGDDRDILEGDNVTRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDNVKRSRAEAKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDTIINQKTKKEPLaCIYVGVGQKRSTIAQLVGQLDERGAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDSGKHAVI-FYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNTAlgggSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGAAAQ-YKATKAVAGTTKLELAQYREVAA-FAKFGS-DLDAATQQQLNRGVRLYELLKQGQYE 462
                 5678888999999999999********************************************999999999999999************************************99888777776666655279********************************************************99887775.6799999999*******************9999999999999998766421226677777777777777766677788888999**999999999999999999998866544.455667888999999***99975.566774.67777788888888888888887665 PP

>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.9   0.1   2.9e-30   8.4e-28      65     360 ..     120     405 ..      90     419 .. 0.86

  Alignments for each domain:
  == domain 1    score: 94.9 bits;  conditional E-value: 2.9e-30
   TIGR01040  65 ttveftgdilrlpvsedmlgrvfngsgkpidkgpkvlaedyldingqpinpkariypeemiqtgisaidvmnsiargqkiplfsaaglphneiaaqicrqaglvkksekdvkdekeenfaivfaamgvnletarffkqdfeengslervtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrvegr..ngsitqipiltmpnddithpipdltgyitegqiyvdrqlhnrqiyppinvlpslsrlmks 360
                  +v  tg i+ +pv  ++lgrv +g g+pid g ++   +    + ++     r    e + tg+ a+d++  i rgq+  ++      +  ia +     +++++      ++k+e +a ++  +g    t   +  +++e g++++ ++    a d +  + ++p    ++ ey+  + +kh ++   d+s  a a r++s      pgr  +pg ++   + + era +++     gs+t +p++     d++  ip     it+gqi+++ +l+ +   p i v  s+sr+  +
  MMETSP1061-20121228|4624_1 120 DNVTRTGAIVDVPVGPELLGRVVDGIGQPIDGGASLDNVKRSRAEAKAPGIIPRESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAID-----TIINQ------KTKKEPLACIYVGVGQKRSTIAQLVGQLDERGAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFR-DSGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNTAlgGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGAA 405
                 46788****************************99865555544444444444556678888*****************99998887777777654.....33442......345799**************999*****************************************96.899**************************************************99863368******************************************************8655 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   1.1     2e-08   5.8e-06       2      91 ..      62     150 ..      61     162 .. 0.93
   2 !   59.3   0.0   1.7e-19     5e-17     204     430 ..     176     396 ..     158     408 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 2e-08
   TIGR01043   2 kGeivrvsGplvvaeglkgakmyevvkvgeekliGeiiriegdkaviqvyeetsGikpgepvestGaplsvelGpGllesiydGvqrpld 91 
                 +G++++v   +    gl++ +  e+v v   +l G  +++e+d++ + ++ +   i  g++v++tGa + v +Gp ll+++ dG+ +p+d
  MMETSP1061-20121228|4624_1  62 TGSVISVGDGIARVYGLSNVQAGEMV-VFACGLRGMALNLEEDNVGVVIFGDDRDILEGDNVTRTGAIVDVPVGPELLGRVVDGIGQPID 150
                 689999999999999*********99.56789********************************************************97 PP

  == domain 2    score: 59.3 bits;  conditional E-value: 1.7e-19
   TIGR01043 204 peeplvtGqrildtlfpiakGGtaaipGpfGsGktvtq.qsl.akw..sdaeivvyiGcGerGnemtevleefpeledpktGkpllertvliantsnmpvaareasiytGitiaeyfrdmGydvalvadstsrwaealreisgrleempgeeGypa...ylasrlaefyeraGrvktlgseeregsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwl 430
                  +ep++tG + +d+l pi +G    i G   +Gkt    + +  +    +    +y+G G++   +++ + ++ e       +  ++  +++a t+      +  + ytG ++ eyfrd G   ++  d  s+ a a r++s  l   pg e yp    yl srl    era +++t  +    gs+t +  +    Gd+s  +  n + i      l+++l  +   pai   
  MMETSP1061-20121228|4624_1 176 VSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAiDTIiNQKtkKEPLACIYVGVGQKRSTIAQLVGQLDE-------RGAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDSGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGdvfYLHSRL---LERAAKMNTALGG---GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVG 396
                 579*******************************97541333123200344578********9999988876543.......567**********99999999999*************************************************8444666665...79****9998888...9**************************99999999999999999999765 PP

>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.9   6.2e-07   0.00018      15      91 ..      75     150 ..      60     162 .. 0.80
   2 !   52.2   0.1   2.9e-17   8.5e-15     203     442 ..     173     404 ..     157     428 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 6.2e-07
   TIGR01042  15 aeemagaamyelvrvgheelvgeiirlegdkatiqvyeetagltvgdpvlrtgkplsvelgpgilgnifdgiqrplk 91 
                    ++ +   e+v v    l g  + le+d++ + ++ +   +  gd+v rtg  + v +gp +lg + dgi +p++
  MMETSP1061-20121228|4624_1  75 VYGLSNVQAGEMV-VFACGLRGMALNLEEDNVGVVIFGDDRDILEGDNVTRTGAIVDVPVGPELLGRVVDGIGQPID 150
                 4445555555555.33456779999*************************************************986 PP

  == domain 2    score: 52.2 bits;  conditional E-value: 2.9e-17
   TIGR01042 203 klaadtplltgqrvldalfpsvqggttaipgafgcgktvisqs..lskysnsd..vivyvgcgergnemaevlrdfpeltveldgreesimkrttlvantsnmpvaareasiytgitlaeyfrdmgynvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvk.clgsperegsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylk 442
                 + + ++p+ltg + +dal p  +g    i g    gkt i+    + + +  +  + +yvg g++   +a+++        +ld  e   m    +va t+      +  + ytg ++ eyfrd g++  ++ d  s+ a a r++s  l   p  + yp  +    + + era +++ +lg     gs++ +  +    gd s  + +  ++i++    l+  l  +   p++ + +s s+   
  MMETSP1061-20121228|4624_1 173 RESVSEPMLTGLKAVDALIPIGRGQRELIIGDRQTGKTAIAIDtiINQKTKKEplACIYVGVGQKRSTIAQLVG-------QLD--ERGAMDNCIIVAATASDSAPLQFLAPYTGAAMGEYFRDSGKHAVIFYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNtALG----GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESELFYQGQRPAISVGLSVSRVGA 404
                 567889********************************9874311343333332378*******9998886554.......454..346799999*****99999999999*************************************************866666666789**99862566....59**************************9888889999999999999999999887654 PP

>> TIGR00767  rho: transcription termination factor Rho
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.5e-06   0.00045     157     198 ..     185     227 ..     174     242 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.5e-06
   TIGR00767 157 rvldliaPiGkGqralivaPPkaGktvl.lqeianaitrnnpe 198
                 + +d ++PiG+Gqr li+   ++Gkt + ++ i n  t+ +p 
  MMETSP1061-20121228|4624_1 185 KAVDALIPIGRGQRELIIGDRQTGKTAIaIDTIINQKTKKEPL 227
                 568999********************98456788877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.17s 00:00:00.70 Elapsed: 00:00:00.38
# Mc/sec: 1882.58
//
Query:       MMETSP1061-20121228|4631_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 597.09
//
Query:       MMETSP1061-20121228|4632_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 443.96
//
Query:       MMETSP1061-20121228|4634_1  [L=759]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (759 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 3035.75
//
Query:       MMETSP1061-20121228|4640_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|4643_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 467.96
//
Query:       MMETSP1061-20121228|4637_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1897.34
//
Query:       MMETSP1061-20121228|4644_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1802.48
//
Query:       MMETSP1061-20121228|4645_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|4647_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1164.33
//
Query:       MMETSP1061-20121228|4648_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 504.66
//
Query:       MMETSP1061-20121228|4642_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1486.61
//
Query:       MMETSP1061-20121228|4653_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.32
# Mc/sec: 235.11
//
Query:       MMETSP1061-20121228|4655_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 452.53
//
Query:       MMETSP1061-20121228|4649_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.45
# Mc/sec: 1029.51
//
Query:       MMETSP1061-20121228|4657_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 1038.31
//
Query:       MMETSP1061-20121228|4656_1  [L=814]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-92  307.9   0.2    9.6e-71  236.5   0.0    3.1  3  TIGR00555 panK_eukar: pantothenate kinase


Domain annotation for each model (and alignments):
>> TIGR00555  panK_eukar: pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.4e-06    0.0097       3      30 ..     197     224 ..     195     247 .. 0.73
   2 !   54.6   0.0   6.1e-19   2.5e-15      19     112 ..     460     552 ..     452     565 .. 0.90
   3 !  236.5   0.0   2.4e-74   9.6e-71     118     303 ..     606     799 ..     581     800 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.4e-06
   TIGR00555   3 lgiDiGGtLiKvvyesaeeeknrlvfkt 30 
                 +g+D+GGtL+K+vy++ +  ++   +++
  MMETSP1061-20121228|4656_1 197 FGLDVGGTLAKLVYFEKKSLDSDPLYTR 224
                 89*************6555555544444 PP

  == domain 2    score: 54.6 bits;  conditional E-value: 6.1e-19
   TIGR00555  19 aeeeknrlvfktvetekidkvieflkeaikehkrietlkaTGGgafklaellkekleiklskldElealieGlefllkeevkeaftyedddker 112
                   e  ++ +f  +et+k+++ +++++++   h +i+++ aTGGga k+a+  +++l i + k dEl++l+ G++f+l++ v e++t++ ++++ 
  MMETSP1061-20121228|4656_1 460 CRELGGEFHFISFETRKMKNAMDLIRFNNL-HMNIRNMGATGGGAHKFADIWEKELAIGMIKQDELDSLVAGMQFVLSTVVGECYTFRPKQEPI 552
                 566678899******************996.999*****************************************************9888765 PP

  == domain 3    score: 236.5 bits;  conditional E-value: 2.4e-74
   TIGR00555 118 s....kdiypyllvNiGtGvSilkvdskdnyeRvgGtslGGGtllGLgkLltkietfdellelakkGdrkevDllVkdiYgtdy...ekiglkssliAssfgkvlskek.desfkkedilksllvlisnnigqiayllakeenikrivfiGsflrnnlllmkvlssaiefwskGelkalflkhegylGAlGall 303
                 +    ++ ypy+lv iGtGvS+l+vd++  +eRv+G+++GGGt++GL+ Llt++e+f+++++la+kGd ++vD++V+diYg d    ek+gl ++++Assfgk++sk+   +  ++ed++++ll l++nnigq+ayl+ak +n+ ri+f+Gsflr n+++++ ls+ai++wskGe++alfl+hegy+GAlGa+l
  MMETSP1061-20121228|4656_1 606 DtisySSAYPYMLVTIGTGVSVLRVDGPRIHERVSGSTIGGGTFWGLMRLLTDAENFEDAMKLAEKGDPTKVDMMVGDIYGEDSdalEKLGLAADIVASSFGKLVSKDDpAKGLTQEDLARALLSLVTNNIGQVAYLNAKLHNTPRIYFVGSFLRLNMISQRRLSYAIDYWSKGEMEALFLEHEGYFGALGAFL 799
                 13445689*************************************************************************765233689**************99765156799******************************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 2827.35
//
Query:       MMETSP1061-20121228|4658_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         8  (0.00195027); expected 82.0 (0.02)
Passed bias filter:                        8  (0.00195027); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.14s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 277.18
//
Query:       MMETSP1061-20121228|4659_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 517.40
//
Query:       MMETSP1061-20121228|4662_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 2214.48
//
Query:       MMETSP1061-20121228|4666_1  [L=644]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-50  169.1   0.0    3.1e-50  168.3   0.0    1.4  1  TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type
    1.4e-30  104.2   0.0    2.5e-30  103.4   0.0    1.3  1  TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type


Domain annotation for each model (and alignments):
>> TIGR00723  ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.3   0.0   1.5e-53   3.1e-50       2     169 .]     479     643 ..     478     643 .. 0.98

  Alignments for each domain:
  == domain 1    score: 168.3 bits;  conditional E-value: 1.5e-53
   TIGR00723   2 evkelkvgdvvyltGkiitarDeahkrllelldegkelPfdleekvifhaGPivkkneepirvvsvGPttsarmdsfeeelleklgvkavigkGgmskkvvealkkygavylaavgGcaallaks.vkkveavafedLGmPeaiweleveefGPlivaiDskGnslfke 169
                  +++++  ++++ltG+i++arD ah+++l  +++g+ lP + ++++i++aGP+++++++   ++s GPtt++rmd ++++++++ g+ ++++kG++sk v++a+kkyg++yl ++gG+aa+lak+ +k+ve++  e+ Gm ea+w+++v +f P+++ +D+kG+++fke
  MMETSP1061-20121228|4666_1 479 TLSKYPTKTRLSLTGTIVVARDIAHAKMLAKIESGEGLPDYAKNNIIYYAGPAKTPEGYA--SGSFGPTTAGRMDAYVSKFMQNGGSFVTLAKGNRSKTVTNACKKYGGFYLGSIGGPAAILAKNcIKNVEVLDNEEDGM-EAVWKINVVDF-PAFIVVDDKGDDFFKE 643
                 57899999**************************************************98..*************************************************************999**************.***********.*************986 PP

>> TIGR00722  ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   1.2e-33   2.5e-30      29     271 ..     176     426 ..     154     428 .. 0.83

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 1.2e-33
   TIGR00722  29 kkeeseiakevlkailenieiaeklevPvCqDtGvpivFvkvgsekvlieelkeeikegvekateevpLRpnvvevldrentgdntGln.vpqinveivkddeveivvlpkGaGsenvsalkmllPad.glegvkkfvletvkeaggkpCPPiivGvGigg.saelaakLakka...lLrkv....gerhpnkklakleeelleeinelGiGpmGlgGkvtaldvkvevaarhtaslpvavsiqCwanRratl 271
                 + e s+  k v   +l n++ia    +P CqDtG+ iv  k g++  + ++  e +  g  +a ++  LR + v +ld    + ntG+n  +q++v  +k+de +   + kG+Gs n + l   + a  +   + +f+ +t+k++g+ +CPP    + +gg sael +k  k a   +   +    +e  +  +  + e+++le   ++GiG++ +gGk+   dv+v   +rh as pv++ + C a+R+  +
  MMETSP1061-20121228|4666_1 176 DPEASKNDKFVALELLRNADIASGRVLPGCQDTGTAIVSAKRGHRVLTDGNDDEYLSLGAYEAYKNLNLRYSQVAPLDMFEEK-NTGTNlPAQVDVAATKGDEYKFLFMAKGGGSANKTFLYQQTKALlNPGSLEEFLGNTIKTIGTSACPPYHLAIVVGGlSAELNLKTVKMAstkFYDDLptsgSEGGRAFRDVEWEKHILEMTRKMGIGAQ-FGGKYFCHDVRVVRLPRHGASCPVGIGVSCSADRQVLA 426
                 45788888999999*****************************99999**************************997655444.555551569*************************999877766514456899****************999999987567776666665511144444111123334445568899*************8.9*********************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (644 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 2500.03
//
Query:       MMETSP1061-20121228|4671_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 575.95
//
Query:       MMETSP1061-20121228|4672_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1018.20
//
Query:       MMETSP1061-20121228|4670_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.22
# Mc/sec: 2171.82
//
Query:       MMETSP1061-20121228|4667_1  [L=862]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 3447.72
//
Query:       MMETSP1061-20121228|4673_1  [L=841]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.28
# Mc/sec: 3827.68
//
Query:       MMETSP1061-20121228|4675_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       278  (0.0677718); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 465.10
//
Query:       MMETSP1061-20121228|4669_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-65  217.1   0.0    3.3e-64  214.7   0.0    1.8  1  TIGR01123 ilvE_II: branched-chain amino acid aminotransferase
      1e-30  104.8   0.0    4.9e-29   99.3   0.0    2.1  1  TIGR01122 ilvE_I: branched-chain amino acid aminotransferase
    6.4e-08   29.9   0.2    7.1e-06   23.2   0.1    2.3  1  TIGR01121 D_amino_aminoT: D-amino-acid transaminase
    2.9e-05   21.2   0.1    0.00092   16.3   0.1    2.2  1  TIGR03461 pabC_Proteo: aminodeoxychorismate lyase


Domain annotation for each model (and alignments):
>> TIGR01123  ilvE_II: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.7   0.0   3.2e-67   3.3e-64       9     310 ..      92     421 ..      85     423 .. 0.84

  Alignments for each domain:
  == domain 1    score: 214.7 bits;  conditional E-value: 3.2e-67
   TIGR01123   9 eaeleldegsavlhYgqevfeGlkayRtadGkillfRpdanakRlrrsaerlllPeleeelflealkqlvkadkdwvpkakseasLYlRPfliatednlGvkaakeylflvlasPvGaYfkgglapvsifveteyvRaapkGtGavkvgGnYaasllaqkkaaeqglddvvyldpve.......kkkieevGaaniflitkdgelvttpls.esiLegvtresllelakdlg.......leveereiaidelkaaveaGei.....vfacGtaavitPvgelkiegkevevks....e..evGevtkklrdeltdiqyGkl..edkegWi 310
                 e++l l+++   l Yg  ++eGlk yR +dG++++fRpd+n +R+ + a  ++lP ++ elfl+ +++ ++++ + +p+++ +  LY+RP+l+  +++lG  + ++y +l  +sP G+Yfk+     + ++et+  Raa +G+G+vk++GnYa +l++   a++qg+ d ++l+  +       +  ++e+ aanif++++ ge+vt++l  + iL+gvtr+s+++++++         ++ + ++ +i   ++ v+ Ge+     +f +Gtaa + P+++l+++ +e ++++    +  e G++t ++   l ++ +G    +++egW+
  MMETSP1061-20121228|4669_1  92 ETNLPLSPACCSLNYGTTIWEGLKCYRDKDGNAIVFRPDKNFRRFSNGAINMSLPPPSRELFLRGIQHALQQNSHLIPPHGDGMKLYVRPMLLVSGQQLGLYPLSQYSMLFYVSPTGNYFKSATGGLNLHLETKRCRAARGGVGNVKCSGNYAVALKPLMDAKKQGFHDNLFLELETyvdgsldSAILQEMSAANIFFVLNTGEIVTPSLDrGTILPGVTRDSVITIVQEFAddlkeamMKSTGQDANITVSSRDVTVGEVknateAFCTGTAAEVVPIARLATGTDEESFEAvfahGqtEAGPITSAILTMLREVMVGARssKGTEGWL 421
                 67899************************************************************************************************************************99*******************************************999754322222215789********************985389************987643111122244444455555555555555555555689**************99877655542222133489***************9975126678997 PP

>> TIGR01122  ilvE_I: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   0.0   4.8e-32   4.9e-29      20     286 ..     103     410 ..     100     423 .. 0.75

  Alignments for each domain:
  == domain 1    score: 99.3 bits;  conditional E-value: 4.8e-32
   TIGR01122  20 alhYGtgvfeGiRaYetdkgl.aifrlkehveRlydsakilrleipyskeelvevtkevlrknn.l.......ksaYiRplvyvGaedlglkpkvdlkveviiaawewgaylgeealekGikvkvssfrraavnsiptkakaagnYlnsllaksealraGydeailLdeeGyv.........aeGsGenifiv.kdgvlltPpvse.siLkgitrdaviklake................lgievkeerisreelytaDevfltGtaaevtPirev....Dgrki......gegkrGpvtkklqeaffdlveg 286
                 +l YGt+++eG+++Y+ ++g  ++fr ++ + R+ + a  ++l+ p s+e +   ++++l++n  l        + Y+Rp++ v  ++lgl+p +  + +++ ++ + g+y+       G++ ++ + r  a      ++k +gnY  +l   ++a+++G+++ ++L+ e yv          e s  nif v + g+++tP++   +iL g+trd+vi++++e                  i+v  + ++  e+  a e+f tGtaaev+Pi ++    D+ +       g+ ++Gp+t  + +   +++ g
  MMETSP1061-20121228|4669_1 103 SLNYGTTIWEGLKCYRDKDGNaIVFRPDKNFRRFSNGAINMSLPPP-SRELFLRGIQHALQQNShLipphgdgMKLYVRPMLLVSGQQLGLYPLS--QYSMLFYVSPTGNYFKS--ATGGLNLHLETKRCRAARGGVGNVKCSGNYAVALKPLMDAKKQGFHDNLFLELETYVdgsldsailQEMSAANIFFVlNTGEIVTPSLDRgTILPGVTRDSVITIVQEfaddlkeammkstgqdANITVSSRDVTVGEVKNATEAFCTGTAAEVVPIARLatgtDEESFeavfahGQTEAGPITSAILTMLREVMVG 410
                 799*************999761568889999999999988888755.77777777777777764244444332469*****************44..578889999******96..589**********99999************************************998444444333588899997662669******964379************976222222222222111134777888888999*******************9863333443322223336777888888888887777766 PP

>> TIGR01121  D_amino_aminoT: D-amino-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   6.9e-09   7.1e-06     173     250 ..     278     373 ..     270     382 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 6.9e-09
   TIGR01121 173 lvtegsssnvyai.kdgvlythpann.lilnGitrkvilklaee................nglpvkeealtkeelkeadevfvssttaevtPvvei 250
                 ++ e s++n++ +   g + t + ++  il G+tr+ ++++++e                 ++ v+ +++t+ e+k+a e f + t+aev+P+ ++
  MMETSP1061-20121228|4669_1 278 ILQEMSAANIFFVlNTGEIVTPSLDRgTILPGVTRDSVITIVQEfaddlkeammkstgqdANITVSSRDVTVGEVKNATEAFCTGTAAEVVPIARL 373
                 67899****9876156999999998758********999987542222222222222222688899999***********************9876 PP

>> TIGR03461  pabC_Proteo: aminodeoxychorismate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     9e-07   0.00092     169     243 ..     279     371 ..     257     387 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 9e-07
   TIGR03461 169 vvEataaNlfwvke.nkvfTpsLsesGv.aGvmrqlvlellkkl................eveievvkvsleelasadevfitNsllgvvpvk 243
                 + E +aaN+f+v + ++++TpsL++  +  Gv r  v++++++                 +++++  +v++ e+++a e f t +  +vvp++
  MMETSP1061-20121228|4669_1 279 LQEMSAANIFFVLNtGEIVTPSLDRGTIlPGVTRDSVITIVQEFaddlkeammkstgqdaNITVSSRDVTVGEVKNATEAFCTGTAAEVVPIA 371
                 45999****99865279*******988747*******99987651111111111111111344445555555666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 1909.44
//
Query:       MMETSP1061-20121228|4678_1  [L=815]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0095   13.5   0.1        1.5    6.4   0.1    3.0  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
  ------ inclusion threshold ------
      0.038    9.6   0.0      0.054    9.1   0.0    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.1   0.00073       1.5      68     130 ..     104     166 ..      70     168 .. 0.91
   2 !    2.7   0.0    0.0099        20      18      43 ..     204     229 ..     195     232 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00073
   TIGR02552  68 yeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkerae 130
                  e+A + +  ++a++  + + ++ +a+  ++ ++k +Al+ ++ a++i   ++e  +lker+ 
  MMETSP1061-20121228|4678_1 104 VEDAFQGFLGCYAIRDRTVDGFLFIAKEVMERKQKDMALAYIDQALAIEPGNKEALTLKERIT 166
                 5899999********999999999**************************9999******985 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.0099
   TIGR02552  18 leaiYalAYnlyqqgkyeeAeklFql 43 
                  e++Y+++ +l+++++ye  + +F+l
  MMETSP1061-20121228|4678_1 204 PEDLYEYGSTLFSRKNYEHCADVFEL 229
                 5899*******************986 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   2.7e-05     0.054     152     199 ..     115     162 ..      90     167 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 2.7e-05
   TIGR02917 152 laiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLk 199
                  ai  +  +  l  A+  +++++ d a a +d++L+++p+n +Al Lk
  MMETSP1061-20121228|4678_1 115 YAIRDRTVDGFLFIAKEVMERKQKDMALAYIDQALAIEPGNKEALTLK 162
                 5667777777888899999***************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.12s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 2988.09
//
Query:       MMETSP1061-20121228|4680_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-23   79.4   0.0    2.4e-11   41.3   0.0    3.0  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    5.7e-11   40.3   0.0    3.3e-07   28.0   0.0    2.4  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    4.6e-10   36.9   0.0    2.5e-05   21.3   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    3.5e-07   27.4   0.4     0.0033   14.3   0.0    3.0  3  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    1.9e-06   25.1   0.0    0.00029   17.9   0.0    2.4  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    7.5e-05   19.5   0.1      0.032   10.9   0.0    2.2  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    0.00011   19.8   0.0      0.025   12.2   0.0    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00029   17.9   0.0       0.23    8.3   0.0    2.2  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0029   15.0   0.0     0.0067   13.8   0.0    1.5  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
  ------ inclusion threshold ------
      0.027   11.7   0.0      0.059   10.5   0.0    1.6  1  TIGR00436 era: GTP-binding protein Era


Domain annotation for each model (and alignments):
>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   1.1e-11   4.5e-09      16     123 ..     201     309 ..     196     311 .. 0.82
   2 !   41.3   0.0     6e-14   2.4e-11     122     270 ..     406     582 ..     390     585 .. 0.75

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 1.1e-11
   TIGR03596  16 keklklvDvvievlDARiplssknpeleelvk...nkprlivlnkaDladpektkkwlkyfeekgkkalavnakkkkkvkkilkaikkllkekkeklkakglkkkairalv 123
                    l++   +++++DAR pl    ++l+ +++    kp l+++nk+D   p + k+w +yf++ +++   v  +++++ k++ + + ++++e++e++     ++++i alv
  MMETSP1061-20121228|4680_1 201 WRVLERCSCIVQIVDARNPLFYLSQDLKAYTTkelGKPMLLLINKSDYLTPVQRKAWHEYFSHPDHQWEHVFFSAHEQQKQVDEDAARAAREETEEE--ERQRQREIAALV 309
                 556778889**********99999999998876678**************************99988888888888888999999999888888773..344566666666 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 6e-14
   TIGR03596 122 lvvGiPNvGKStliNrlakkkv.......akvgnkpgvTksqqwiklsk..eleLlDtPGilwpkledeevglkLaltgaikdeildkeevalfllellkek...................ypeelkerykleeeeeeeeelleeiakkrglllkg.geldleraaeillkelrkgkl 270
                  +vG+PNvGKS++iN l+++ +       + v+++pg Tk+ q++ l +  ++ L+D PG+++p + ++++ l  a +  i + + d + v+  l++ + ++                     ++l+   +++  + ++ e+l++++  r +l ++ g  d++raa++++ e+ +g+l
  MMETSP1061-20121228|4680_1 406 GMVGFPNVGKSSVINVLMGNAKnahgvvrVGVAAQPGKTKHFQTLLLPDrpDMLLCDCPGLVFPSFVSNTADLIAAGVYPIAQ-MRDWQPVVDLLCQRIPREvlnaqysikiplptadaiyEAKQLQGNDGIRIPPPTADEFLTTFCVARSILAASsGVPDYQRAARMIIMEYATGRL 582
                 579**************98764222222245889**********9997644899************99987766555555543.344555555555555555566779999999977766444667777777777779999****999999887653788**********99999876 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00034      0.14     101     176 ..     207     279 ..     191     288 .. 0.76
   2 !   28.0   0.0     8e-10   3.3e-07      21      76 ..     405     468 ..     388     480 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00034
   TIGR03598 101 LkgvvllvDirhelkelDlellell.keakipvlvvltKaDklkkselkkalkkvkkelkkeeekvevllfSslkke 176
                  +++v++vD+r +l  l ++l +++ ke + p+l++++K+D l+  ++k+  + +++     +++ e ++fS+++++
  MMETSP1061-20121228|4680_1 207 CSCIVQIVDARNPLFYLSQDLKAYTtKELGKPMLLLINKSDYLTPVQRKAWHEYFSH----PDHQWEHVFFSAHEQQ 279
                 5689**********9999999876516679*************99887765554444....3344466777777665 PP

  == domain 2    score: 28.0 bits;  conditional E-value: 8e-10
   TIGR03598  21 iafaGrSNvGKSsliNaLtnrkklar......tSktPGrTqlinffevne..elrlvDlPGYGy 76 
                   ++G  NvGKSs+iN+L+++ k a+      ++ +PG+T++     + +  ++ l D PG  +
  MMETSP1061-20121228|4680_1 405 FGMVGFPNVGKSSVINVLMGNAKNAHgvvrvgVAAQPGKTKHFQTLLLPDrpDMLLCDCPGLVF 468
                 56799**************9999885444455799*********9999554599*******755 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.6e-05    0.0065     253     333 ..     202     279 ..     188     310 .. 0.53
   2 !   21.3   0.0     6e-08   2.5e-05     124     200 ..     351     427 ..     339     474 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.6e-05
   TIGR03594 253 kaieradvvllvlDategiseqDlkiaglil.eegkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgk 333
                 +++er+  ++ ++Da++++    + +  + + e gk++++++NK D + +  +++++++ +++  ++    + vf SA++++
  MMETSP1061-20121228|4680_1 202 RVLERCSCIVQIVDARNPLFYLSQDLKAYTTkELGKPMLLLINKSDYL-TPVQRKAWHEYFSHPDHQW---EHVFFSAHEQQ 279
                 455666666666666666655444444443303466666666666666.5666666655555444443...23344444433 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 6e-08
   TIGR03594 124 eaeaaefyslGlgevl..aiSaehgrgikdLldeileelpeeeeeeeeeeeeepikiaiiGrpNvGKStLvNallgeer 200
                 e   +e+ +l l e +   + +++     +Lld + +   +++ + +e+   ++i ++++G pNvGKS+ +N l+g+ +
  MMETSP1061-20121228|4680_1 351 EIVEKEMKELSLAEKTtdNVGVNEPLSRVELLDWLERFAGANDCTMDEK--YNRIPFGMVGFPNVGKSSVINVLMGNAK 427
                 3345556555555543114566666666678887776666665555555..5679********************9864 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.56   2.3e+02      30      58 ..     107     134 ..     102     138 .. 0.79
   2 !   14.3   0.0     8e-06    0.0033     228     315 ..     199     279 ..     188     291 .. 0.84
   3 !    9.7   0.0    0.0002     0.081     161     177 ..     406     422 ..     403     467 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.56
   TIGR02729  30 GGPdGGdGGkGGsvileadenlntLldfr 58 
                 +G + G+G +GG vil+ +e++n+ + f+
  MMETSP1061-20121228|4680_1 107 AGEAHGNGENGG-VILQGNERVNSNFAFK 134
                 677889999988.8899999999877665 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 8e-06
   TIGR02729 228 eFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel.ekkvlaisaltke 315
                 +  + +er++++++++d+++         l  ++++Lk+y+++ + kp+l+++nk d l+  + ++  + +++   + + +++sa +++
  MMETSP1061-20121228|4680_1 199 QLWRVLERCSCIVQIVDARNP--------LFYLSQDLKAYTTKELGKPMLLLINKSDYLTPVQRKAWHEYFSHPDhQWEHVFFSAHEQQ 279
                 5668899*********99887........7899****************************9999999999886658888888887655 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.0002
   TIGR02729 161 glvGlpnaGkStllsav 177
                 g+vG+pn+GkS++++++
  MMETSP1061-20121228|4680_1 406 GMVGFPNVGKSSVINVL 422
                 9*************986 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0     0.008       3.3      53     106 ..     195     251 ..     188     284 .. 0.80
   2 !   17.9   0.0   7.2e-07   0.00029     151     217 ..     398     468 ..     349     481 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.008
   TIGR03597  53 dflnllnslsekkalvvavvD....ifdlegslikelkrfvkenkvllvvNKidllpk 106
                 ++ ++l ++ e+ +++v++vD    +f l++ l    ++    +++ll++NK d+l  
  MMETSP1061-20121228|4680_1 195 EIWRQLWRVLERCSCIVQIVDarnpLFYLSQDLKAYTTKE-LGKPMLLLINKSDYLTP 251
                 56678888899999*******8888888887666554444.3689**********964 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 7.2e-07
   TIGR03597 151 karekkdvyvvGvtNVGKSsliNkllklnkgkkkv..ittSkfpgTTldlieipl..dkesvllDtpGiin 217
                 +++++    +vG  NVGKSs+iN l+ ++k+ + v  + +   pg T ++    l    +  l D pG++ 
  MMETSP1061-20121228|4680_1 398 EKYNRIPFGMVGFPNVGKSSVINVLMGNAKNAHGVvrVGVAAQPGKTKHFQTLLLpdRPDMLLCDCPGLVF 468
                 5555555668****************99988888612567899999999998888524467788***9986 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0019      0.76      82     173 ..     202     296 ..     196     312 .. 0.68
   2 !   10.9   0.0   7.8e-05     0.032       4      30 ..     399     425 ..     396     441 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0019
   TIGR03918  82 evlektdlallvvdaeaeleeleeelle.elkekkipvivvlnkidlkeeeke....keklekkkeeevvlvsakekegieelkealiellpeeaee 173
                 +vle++ +++ +vda++ l  l ++l + + ke   p+++++nk+d  +  ++    +  ++  ++ e+v+ sa+e+++  ++ e  ++++ ee+ee
  MMETSP1061-20121228|4680_1 202 RVLERCSCIVQIVDARNPLFYLSQDLKAyTTKELGKPMLLLINKSDYLTPVQRkawhEYFSHPDHQWEHVFFSAHEQQK--QVDEDAARAAREETEE 296
                 799*************99988888887624677899**********998776534222223334555667777766654..5555555555444433 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 7.8e-05
   TIGR03918   4 kaerlhialfGrrNaGKSsliNaltgq 30 
                 k +r+  +++G  N+GKSs+iN l+g+
  MMETSP1061-20121228|4680_1 399 KYNRIPFGMVGFPNVGKSSVINVLMGN 425
                 6689999*****************986 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.013       5.4      76     124 ..     199     248 ..     193     262 .. 0.82
   2 !   12.2   0.0     6e-05     0.025       6      27 ..     405     426 ..     400     451 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.013
   TIGR00231  76 everslevvdivilvldveeglekqtkeiiheakkk.gvpiilvvnKiDl 124
                 +  r+le ++ ++ ++d++++l    + ++ + +k+ g+p++l +nK D 
  MMETSP1061-20121228|4680_1 199 QLWRVLERCSCIVQIVDARNPLFYLSQDLKAYTTKElGKPMLLLINKSDY 248
                 55689999************998777777777665449**********96 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 6e-05
   TIGR00231   6 ivivGhvdvGKstLlnsllknk 27 
                  ++vG+++vGKs+ +n l +n 
  MMETSP1061-20121228|4680_1 405 FGMVGFPNVGKSSVINVLMGNA 426
                 59*****************997 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0012      0.49     285     330 ..     203     253 ..     194     304 .. 0.79
   2 !    8.3   0.0   0.00055      0.23     211     232 ..     404     425 ..     356     437 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0012
   TIGR00450 285 aikeadlvlyvlDaskplt..kddeliitlkkkkkdlllvlNKiDLa...e 330
                  +++++ ++ ++Da++pl    +d    t+k   k++ll++NK D     +
  MMETSP1061-20121228|4680_1 203 VLERCSCIVQIVDARNPLFylSQDLKAYTTKELGKPMLLLINKSDYLtpvQ 253
                 6899*************85224444566778899***********763443 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00055
   TIGR00450 211 klaivGktNvGKSSLlNallkk 232
                    +vG +NvGKSS++N+l+ +
  MMETSP1061-20121228|4680_1 404 PFGMVGFPNVGKSSVINVLMGN 425
                 5578*************99865 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.6e-05    0.0067     127     196 ..     407     479 ..     395     490 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.6e-05
   TIGR00157 127 faGqSGVGKSSLiNlldpevkqk..vkevseklklGkhTTtsvelfhl.qgGliiDtPGfneldlenleeeql 196
                 ++G   VGKSS+iN l +++k++  v  v  + + Gk    ++ l       l++D PG+  +++ +  ++ +
  MMETSP1061-20121228|4680_1 407 MVGFPNVGKSSVINVLMGNAKNAhgVVRVGVAAQPGKTKHFQTLLLPDrPDMLLCDCPGLVFPSFVSNTADLI 479
                 788889***********9998763355788899999999999999988688899*****99888877665555 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00014     0.059       4      25 ..     406     427 ..     403     475 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00014
   TIGR00436   4 ailGrpnvGKSTLlNkllgqki 25 
                 +++G pnvGKS ++N l+g+  
  MMETSP1061-20121228|4680_1 406 GMVGFPNVGKSSVINVLMGNAK 427
                 78***************98743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.48
# Mc/sec: 2026.58
//
Query:       MMETSP1061-20121228|4681_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 2030.30
//
Query:       MMETSP1061-20121228|4685_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   10.9   3.9      0.074   11.1   2.1    1.5  1  TIGR03643 TIGR03643: TIGR03643 family protein


Domain annotation for each model (and alignments):
>> TIGR03643  TIGR03643: TIGR03643 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.1   1.8e-05     0.074      45      69 ..      41      65 ..      33      71 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.8e-05
   TIGR03643 45 lWRkRvsgrktKhekkresevtrak 69
                 WR+Rv+++++K ++ +  + + ++
  MMETSP1061-20121228|4685_1 41 KWRNRVTQKAAKEQQLKLRKQMEQQ 65
                6*************99655544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       347  (0.0845929); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 271.52
//
Query:       MMETSP1061-20121228|4676_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-10   36.7   3.9    1.1e-09   36.4   2.7    1.1  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P
  ------ inclusion threshold ------
       0.11    7.9  10.6       0.12    7.8   7.4    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   2.7   5.2e-13   1.1e-09      18     105 .]      19     107 ..       5     107 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 5.2e-13
   TIGR03685  18 neenlkkvleaaGvevdearvKalvaaLedvdieeaiekaaaapvaaaaaa.aaaaeaaeeekeeeeeeeeekeeeeeealegLgaLFG 105
                 + e+++  l a+Gvevd a +  l a Le+ di e ie      +   ++        a+   +e++eeeee+eeee+ea +g g LFG
  MMETSP1061-20121228|4676_1  19 SKEDVTGALGAVGVEVDTASLDKLYADLEGKDIAELIEAGKEQLAKFGGGGgGGGGGGAAAGGDEAAEEEEEEEEEEAEAPAGGGGLFG 107
                 57899********************************98877666655544134444555556666788888889999999999****8 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.4   5.8e-05      0.12     938     990 ..      45      97 ..      12     100 .. 0.46

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 5.8e-05
   TIGR00927 938 deevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeee 990
                 d e+kd  +  e+  e+ ++   +  G  g+g + GGd   eeeeeeeeee e
  MMETSP1061-20121228|4676_1  45 DLEGKDIAELIEAGKEQLAKFGGGGGGGGGGGAAAGGDEAAEEEEEEEEEEAE 97 
                 44444444444433333333333333333444444554444444444433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.37
# Mc/sec: 406.67
//
Query:       MMETSP1061-20121228|4688_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   13.4   0.0      0.032   12.6   0.0    1.4  1  TIGR03696 Rhs_assc_core: RHS repeat-associated core domain


Domain annotation for each model (and alignments):
>> TIGR03696  Rhs_assc_core: RHS repeat-associated core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   7.7e-06     0.032      20      51 ..     137     169 ..     119     179 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.7e-06
   TIGR03696  20 tGqeldeetgl.yyngaRyYdpelgrFlspDpi 51 
                 +G+   + t++ yy ++R ++ ++  ++s+D i
  MMETSP1061-20121228|4688_1 137 NGKDGTKTTQWrYYVHYRDFNRRMDEWISMDRI 169
                 577777888989*******************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 1017.42
//
Query:       MMETSP1061-20121228|4686_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-56  188.2   0.0    6.7e-56  187.8   0.0    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    2.8e-49  166.0   0.0    8.5e-49  164.4   0.0    1.6  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    8.8e-44  147.9   0.0    1.6e-43  147.0   0.0    1.4  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.2e-27   94.6   0.0    2.4e-27   93.7   0.0    1.4  1  TIGR03689 pup_AAA: proteasome ATPase
    8.2e-07   26.2   0.0    2.8e-06   24.4   0.0    1.8  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    6.9e-06   23.0   0.0    7.1e-05   19.6   0.0    2.2  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    2.4e-05   21.3   0.0    4.6e-05   20.4   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    7.4e-05   19.3   0.0    0.00016   18.2   0.0    1.5  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00077   16.0   0.4     0.0018   14.8   0.0    1.7  2  TIGR00368 TIGR00368: Mg chelatase-like protein
      0.004   13.3   0.0      0.004   13.3   0.0    3.0  4  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
  ------ inclusion threshold ------
      0.078   10.4   0.0      0.078   10.4   0.0    2.4  3  TIGR01618 phage_P_loop: phage nucleotide-binding protein


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.8   0.0   1.8e-58   6.7e-56     447     723 ..     286     561 ..     264     563 .] 0.87

  Alignments for each domain:
  == domain 1    score: 187.8 bits;  conditional E-value: 1.8e-58
   TIGR01243 447 vpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlseavtdrivnqllteldgleen......sdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplae..dvdleelakktegytgadieavvreaalaalresvksvakekleaeekeilkdl.kvkkkdflealkkvkpsvskedlrvye 723
                 + n  w+di gl+e+kq+l+ea   pl  +++f   g+r p+ +ll+gppgtgktll kava es   +       + skw ge ek +r +f+ ar aap+iif+de+da+  +r ++ +++ + r   +++t++dg+++n      ++++viaatn p  +d a+lr  r+ r i+vp pd  +r+ ++k    +   ++    d++ lak+  g++g+di +++ ea++  +r s+     + ++a       d+  ++++df  a+++   svsk  l++y+
  MMETSP1061-20121228|4686_1 286 LHNTTWNDIAGLKEAKQALQEAAILPLMRPDLFS--GLRKPRNILLYGPPGTGKTLLVKAVAHESSCVLFVCTASAMTSKWHGEGEKLLRTLFEVARAAAPSIIFVDEMDALLSSRKSEGEHEASRRFKTEFMTNIDGIVKNngddngKHLLVIAATNCPWDIDSAVLR--RFPRRIYVPLPDATTRKALLKNLLEKAGDTDlsKEDVKVLAKRLSGFSGSDISSIASEASFGPIR-SLG--GIDAIQAA---KPSDIrPIQRQDFDAAIDQATKSVSKSVLKQYD 561
                 56889****************************7..99******************************9999*******************************************************************976333333569*****************9..9*******************9766654433211346788**************************.332..33444444...334441599*********************996 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       1.5   5.5e+02       6      46 ..     106     146 ..     103     161 .. 0.84
   2 !  164.4   0.0   2.3e-51   8.5e-49     103     346 ..     267     518 ..     231     526 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.5
   TIGR01242   6 ekirkledekkllekekirlereverlrselerlrsppllv 46 
                 + +r++ ++++ le  ++++e  +e+l+s+ ++l +p l  
  MMETSP1061-20121228|4686_1 106 VSLRQMGRKREALEISEMSIELLIEYLKSDPSKLDVPGLSR 146
                 56789999999999999999999999999999999998755 PP

  == domain 2    score: 164.4 bits;  conditional E-value: 2.3e-51
   TIGR01242 103 ekdplvkaleve......erpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtl.lqllaeldGf......dprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkm...klaedvdleelaklteGasGadlkaivteaGmfaire 346
                 ++dplv++++ e      +  + +++di Gl++  + ++ea  lpl +p+lf   G+  p+ +llyGppGtGktll kava+e+   +    +s +  k+ GeG +l+r +f++a+  apsiif+de+da+ + r      G+ e  r +  ++++++dG+      d+  ++ viaatn +  +d a+lr  rf r i vplpd   r  +lk    k+   +l++  d++ lak   G+sG+d+ +i+ ea +  ir 
  MMETSP1061-20121228|4686_1 267 SQDPLVQTIKSElyidpsKLHNTTWNDIAGLKEAKQALQEAAILPLMRPDLFS--GLRKPRNILLYGPPGTGKTLLVKAVAHESSCVLFVCTASAMTSKWHGEGEKLLRTLFEVARAAAPSIIFVDEMDALLSSRKS---EGEHEASRRFkTEFMTNIDGIvknngdDNGKHLLVIAATNCPWDIDSAVLR--RFPRRIYVPLPDATTRKALLKNLLEKAgdtDLSK-EDVKVLAKRLSGFSGSDISSIASEASFGPIRS 518
                 566666665433111111335789****************************8..899************************************************************************9887754...4555555443145566666653222215555678****************9..9*******************98776652215555.699***********************999986 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.0   0.0   4.3e-46   1.6e-43      48     274 ..     284     513 ..     265     557 .. 0.84

  Alignments for each domain:
  == domain 1    score: 147.0 bits;  conditional E-value: 4.3e-46
   TIGR01241  48 eekvkvtfkdvaGideakeelvei.vdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetneg......vivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvkla..eevdlkkvarrtpGfsGadlanlvneaal 274
                 ++ +++t++d+aG++eak+ l+e  +  L +p+ f+  G + P+ +ll+GpPGtGktLl kava e++  +f  + s +   + G G + +r lfe a+ +aP+iif+De+Da+ ++r+    g ++   +    +++++DG  +n+g      ++v+aatn p  +D+a+lr  rf r++ v +Pd + r+++lk  ++k      ++ d+k +a+r +GfsG+d++ +  ea++
  MMETSP1061-20121228|4686_1 284 SKLHNTTWNDIAGLKEAKQALQEAaILPLMRPDLFS--GLRKPRNILLYGPPGTGKTLLVKAVAHESSCVLFVCTASAMTSKWHGEGEKLLRTLFEVARAAAPSIIFVDEMDALLSSRKSE--GEHEASRRFKTEFMTNIDGIVKNNGddngkhLLVIAATNCPWDIDSAVLR--RFPRRIYVPLPDATTRKALLKNLLEKAGDTdlSKEDVKVLAKRLSGFSGSDISSIASEASF 513
                 5567899****************72456999****8..669*****************************************************************************984..4455555555578888888765543223334**********99*******..********************9877665433256789**********************976 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.0   6.3e-30   2.4e-27     178     380 ..     288     478 ..     269     496 .. 0.87

  Alignments for each domain:
  == domain 1    score: 93.7 bits;  conditional E-value: 6.3e-30
   TIGR03689 178 dvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGv......eslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylte 380
                 + t++di Gl++  + +++a  lP+++++l+   +l+ P+ +llyGPPG+Gktl+ kava            ++ +++      + +k+ Ge e+ +r +fe ar +a    P ++f+demd+l+  r s    +        +++++dG+      ++ + ++vi a+n    id a+lr  r+  +i +  Pda++ +++l++ l++
  MMETSP1061-20121228|4686_1 288 NTTWNDIAGLKEAKQALQEAAILPLMRPDLFS--GLRKPRNILLYGPPGTGKTLLVKAVAHE----------SSCVLFVCTASAMTSKWHGEGEKLLRTLFEVARAAA----PSIIFVDEMDALLSSRKSEGEHEASRRFKTEFMTNIDGIvknngdDNGKHLLVIAATNCPWDIDSAVLR--RFPRRIYVPLPDATTRKALLKNLLEK 478
                 579****************************7..8************************963..........33445556778899******************9876....99****************9999****************8444333345679******************..88889999999999999998887765 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.93   3.5e+02     358     374 ..     221     237 ..     179     239 .. 0.68
   2 !   24.4   0.0   7.4e-09   2.8e-06     118     200 ..     325     403 ..     296     411 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.93
   TIGR00382 358 kaiakkalerktGargl 374
                 ++ia +a +r tGar++
  MMETSP1061-20121228|4686_1 221 TKIAANASNRITGARTI 237
                 57999999999999986 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 7.4e-09
   TIGR00382 118 snilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidki..arksen 200
                  nill Gp G+Gktll +++a+e    + ++ a+++t   + Ge  e +l  l+++a      a   ii++de+d +  +rkse+
  MMETSP1061-20121228|4686_1 325 RNILLYGPPGTGKTLLVKAVAHESSCVLFVCTASAMTSK-WHGEG-EKLLRTLFEVAR----AAAPSIIFVDEMDALlsSRKSEG 403
                 59**********************************975.77885.889999988775....57789********9766899986 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.9e-07   7.1e-05      38      63 ..     322     347 ..     313     351 .. 0.90
   2 ?    0.3   0.0      0.14        52     116     147 ..     371     401 ..     367     425 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.9e-07
   TIGR02928  38 srpsnvliyGktGtGKtavtkkvlke 63 
                 ++p+n+l+yG++GtGKt+ +k+v +e
  MMETSP1061-20121228|4686_1 322 RKPRNILLYGPPGTGKTLLVKAVAHE 347
                 58*******************99865 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.14
   TIGR02928 116 vfeelvkeleeredsliivLDEiDklvkkead 147
                 + ++l+++  +   s+i  +DE+D l+++ ++
  MMETSP1061-20121228|4686_1 371 LLRTLFEVARAAAPSII-FVDEMDALLSSRKS 401
                 56677776666666655.56******966555 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.2e-07   4.6e-05      32      94 ..     326     396 ..     320     425 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.2e-07
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpalekp.....gDlaailtal...eegdvlfiDeihrls 94 
                  +llyGPPG Gkt l k +a+e    l + ++ a++ +     + l+  l ++    + +++f+De+ +l 
  MMETSP1061-20121228|4686_1 326 NILLYGPPGTGKTLLVKAVAHESSCVLFVCTASAMTSKwhgegEKLLRTLFEVaraAAPSIIFVDEMDALL 396
                 69**********************99999888887643222224566665554111456899999998874 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.3e-07   0.00016     280     394 ..     296     402 ..     284     410 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.3e-07
   TIGR03922 280 GlervkeqvaalkssvevalvRae..rGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelid...kaLggvlFlDEayaLvekrdga 394
                 Gl+++k+   al+++  + l+R +   Gl    + + +ll GPPGtGkt + ++va+  + +  +          + + +++ ge e+    l +    a   ++F+DE+ aL++ r+ +
  MMETSP1061-20121228|4686_1 296 GLKEAKQ---ALQEAAILPLMRPDlfSGL---RKPRNILLYGPPGTGKTLLVKAVAHESSCVLFV-------CTASAMTSKWHGEGEKLLRTLFEvarAAAPSIIFVDEMDALLSSRKSE 402
                 5555554...4555566666665511344...466889******************876544333.......334567788888888877776662214567899*****9999886554 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       1.2   4.5e+02     334     418 ..     152     237 ..     137     254 .. 0.55
   2 !   14.8   0.0   4.8e-06    0.0018     211     231 ..     324     344 ..     264     347 .. 0.64

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.2
   TIGR00368 334 lyParfqlvaamnpsPtGhygdkitdnrcspqqierylkklsgplldri.dlsvevrllkeellsetgrgessaevkqrvlkarei 418
                      ++l  am     G+ +  +td +  +qq+ +  + +  +l   + + sv+++ l ++   +      +a+  +r+  ar i
  MMETSP1061-20121228|4686_1 152 RIQHALTLAEAMKSELRGNVTTSNTDKSKKRQQQLKQQSSIVDSLSKLLnETSVKMNSLSPRNDPNAKGTKIAANASNRITGARTI 237
                 55555566666666666777776666666666655554444444333331244444544444444333344455555555555555 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 4.8e-06
   TIGR00368 211 ghnllllGPPGsGktllakrl 231
                   n+ll GPPG+Gktll+k +
  MMETSP1061-20121228|4686_1 324 PRNILLYGPPGTGKTLLVKAV 344
                 47***************9976 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   2.6       2.6   9.9e+02     505     529 ..      67      91 ..      27     138 .. 0.56
   2 ?   -2.2   0.1      0.55     2e+02     400     457 ..     132     190 ..     104     210 .. 0.73
   3 ?    2.1   0.0     0.027       9.9     596     617 ..     325     346 ..     285     354 .. 0.74
   4 !   13.3   0.0   1.1e-05     0.004     241     295 ..     359     412 ..     322     418 .. 0.75

  Alignments for each domain:
  == domain 1    score: -4.5 bits;  conditional E-value: 2.6
   TIGR03346 505 ekeleeaeekekeekkekllkeevt 529
                   e++++++++++++++k  ++e+t
  MMETSP1061-20121228|4686_1  67 GMEMRRQQQQQQQQQQQKRNRNELT 91 
                 1122222222222221222222222 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.55
   TIGR03346 400 idskPeeld..eldrriiqlkierealkkekdeaskerleklekelaeleeesaeleekw 457
                 ++s P +ld   l+r+ + ++i++ al+  +   s+ r +  +++ ++ ++++++l+++ 
  MMETSP1061-20121228|4686_1 132 LKSDPSKLDvpGLSREAVGIRIQH-ALTLAEAMKSELRGNVTTSNTDKSKKRQQQLKQQS 190
                 578888887444888888888864.56666667788888888888888888888887764 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.027
   TIGR03346 596 gsflflGptGvGktelakalae 617
                    l+ Gp G Gkt l+ka+a+
  MMETSP1061-20121228|4686_1 325 RNILLYGPPGTGKTLLVKAVAH 346
                 3467778999999999988885 PP

  == domain 4    score: 13.3 bits;  conditional E-value: 1.1e-05
   TIGR03346 241 iaGakyrGefeerlkavlkevekseGeiilfidelhtlvGaGkaeGaldagnllk 295
                    +k++Ge e+ l++ l ev+++    i+f+de+ +l+ + k+eG  +a+  +k
  MMETSP1061-20121228|4686_1 359 AMTSKWHGEGEKLLRT-LFEVARAAAPSIIFVDEMDALLSSRKSEGEHEASRRFK 412
                 3468*****9988887.568999999999********************998766 PP

>> TIGR01618  phage_P_loop: phage nucleotide-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.7       0.5   1.9e+02      63     117 ..      27      82 ..      19      93 .. 0.74
   2 ?   -2.9   0.1       2.4     9e+02     100     130 ..     174     200 ..     165     211 .. 0.52
   3 ?   10.4   0.0   0.00021     0.078      11      33 ..     323     345 ..     321     361 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.5
   TIGR01618  63 kpvqelveflklanaaaeeYdniviDnise.lqklvlanlgreaknrspelqdYqk 117
                  ++q+ ++ +k  n+     +  v+D   + l ++ l+ +g e + +++++q+ q+
  MMETSP1061-20121228|4686_1  27 SKTQTNADNMKNPNIVPLADEKFVVDRFQHdLEQAKLMRKGMEMRRQQQQQQQQQQ 82 
                 5667777777777877778889999998754889999*999999985555554444 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.4
   TIGR01618 100 nlgreaknrspelqdYqkldlylldlltvlk 130
                  + +++k+    +q+  k +  ++d+l+ l 
  MMETSP1061-20121228|4686_1 174 SNTDKSKK----RQQQLKQQSSIVDSLSKLL 200
                 44444444....3444444455555554443 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00021
   TIGR01618  11 sesriliYgkpGlGktsvikyle 33 
                 ++ +il+Yg pG+Gkt ++k + 
  MMETSP1061-20121228|4686_1 323 KPRNILLYGPPGTGKTLLVKAVA 345
                 5689****************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       399  (0.0972696); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.47
# Mc/sec: 1581.06
//
Query:       MMETSP1061-20121228|4691_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1467.72
//
Query:       MMETSP1061-20121228|4692_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1162.52
//
Query:       MMETSP1061-20121228|4689_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1659.29
//
Query:       MMETSP1061-20121228|4694_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-10   36.9   0.1     0.0011   16.4   0.0    3.8  3  TIGR00633 xth: exodeoxyribonuclease III (xth)
    2.3e-08   31.8   0.0    0.00057   17.4   0.0    3.2  3  TIGR00195 exoDNase_III: exodeoxyribonuclease III


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.4e-07    0.0011      82     140 ..      96     153 ..      83     208 .. 0.72
   2 !   12.6   0.0   7.6e-06     0.016     164     197 ..     252     286 ..     242     290 .. 0.91
   3 ?   -1.1   0.0      0.11   2.3e+02     211     226 ..     330     345 ..     313     347 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.4e-07
   TIGR00633  82 giga.eeedeegrvitaefdeltvvnvYvPngeardlerleyklefweallaklekeldk 140
                 g+++ ++++++gr     f ++ ++++YvPn + +++e ++++  +w+a ++++ +++++
  MMETSP1061-20121228|4694_1  96 GVKSsNPHNHQGRFQFFFFPGMDLIQTYVPNNG-TKDESFAKRK-QWDADMKQFVRDRAQ 153
                 5554378999***********************.7888888887.677777766655443 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 7.6e-06
   TIGR00633 164 enkkkagfteeerealdelleag.fvDtfrklnpe 197
                 en++ +gft +er+ ++el+++g f D +r+ +p+
  MMETSP1061-20121228|4694_1 252 ENRGMPGFTIAERKRFAELVKEGdFCDLWREQHPG 286
                 699****************************9986 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.11
   TIGR00633 211 areknvGwRiDyilvs 226
                 ar + + +R+Dy+l+ 
  MMETSP1061-20121228|4694_1 330 ARYEGKAMRLDYFLLA 345
                 5677888******986 PP

>> TIGR00195  exoDNase_III: exodeoxyribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.8e-07   0.00057      82     134 ..     100     151 ..      82     164 .. 0.86
   2 !    6.2   0.0   0.00073       1.5     137     165 ..     174     203 ..     169     209 .. 0.74
   3 !    4.3   0.0    0.0028       5.6     161     193 ..     252     285 ..     241     290 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.8e-07
   TIGR00195  82 aeeedeekRvivaelesvlvvnvYvPngskadeeklkyklqfleelqkylekl 134
                 ++ +++++R +   + ++ ++++YvPn   ++ e +  + q+ +++++++++ 
  MMETSP1061-20121228|4694_1 100 SNPHNHQGRFQFFFFPGMDLIQTYVPN-NGTKDESFAKRKQWDADMKQFVRDR 151
                 456899*********************.7888899**************9875 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00073
   TIGR00195 137 kdkpvlicGDlniapeeiD.lkspkenrnr 165
                  d+++l+cGD+n + + +D  +  k+nrn+
  MMETSP1061-20121228|4694_1 174 VDRKLLWCGDMNASLSYRDgTHWQKRNRNN 203
                 57899*********9999833444555554 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0028
   TIGR00195 161 enrnragfleeerealdklleag.lvDtfRklnp 193
                 enr   gf+  er+ + +l++ g + D +R+ +p
  MMETSP1061-20121228|4694_1 252 ENRGMPGFTIAERKRFAELVKEGdFCDLWREQHP 285
                 7888999****************9*****98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1853.13
//
Query:       MMETSP1061-20121228|4695_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 516.48
//
Query:       MMETSP1061-20121228|4693_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1817.39
//
Query:       MMETSP1061-20121228|4690_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   15.6   0.0     0.0017   15.1   0.0    1.1  1  TIGR00115 tig: trigger factor
     0.0013   16.9   0.8     0.0039   15.4   0.5    1.9  1  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.2e-07    0.0017     148     201 ..     144     201 ..     130     206 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.2e-07
   TIGR00115 148 aaekgDivtidfegkv....dGeafeggkaedfelelgsgqfipgfeeqlvGmkaGee 201
                   + g   +i+++g+     d+++++ g+++ f l+ g+g++i g++e+l  mk G  
  MMETSP1061-20121228|4690_1 144 TPQYGQLCVISYTGYLqlpkDNKKVKFGSQSMFVLKHGNGKMISGLDEGLHTMKRGGR 201
                 56777888999999988999**********************************9965 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.5   1.9e-06    0.0039       3      21 ..      73      91 ..      73     103 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.9e-06
   TIGR01409  3 RRdFLkaaaaagaaaglgl 21
                RRdFL++++  ++aa l++
  MMETSP1061-20121228|4690_1 73 RRDFLQRSSSLAGAALLST 91
                9*******66666555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1773.24
//
Query:       MMETSP1061-20121228|4696_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1048.97
//
Query:       MMETSP1061-20121228|4699_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 503.96
//
Query:       MMETSP1061-20121228|4707_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.17
# Mc/sec: 908.40
//
Query:       MMETSP1061-20121228|4709_1  [L=1071]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1071 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.11s 00:00:00.55 Elapsed: 00:00:00.57
# Mc/sec: 2437.25
//
Query:       MMETSP1061-20121228|4714_1  [L=1072]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1072 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       695  (0.16943); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.34u 0.17s 00:00:01.51 Elapsed: 00:00:00.77
# Mc/sec: 1837.56
//
Query:       MMETSP1061-20121228|4712_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-19   67.6   0.0    1.4e-12   44.9   0.0    2.2  2  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
    3.1e-18   63.5   0.0    4.7e-18   62.9   0.0    1.2  1  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
    8.2e-18   62.0   0.0    1.2e-17   61.4   0.0    1.2  1  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
    4.6e-16   56.5   0.0    6.8e-16   55.9   0.0    1.2  1  TIGR01328 met_gam_lyase: methionine gamma-lyase
    4.5e-14   49.7   0.0    7.4e-14   49.0   0.0    1.3  1  TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
    1.5e-13   48.1   0.0    3.1e-12   43.7   0.0    2.0  2  TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase
  ------ inclusion threshold ------
      0.044   10.5   0.0       0.13    8.9   0.0    1.7  1  TIGR01141 hisC: histidinol-phosphate transaminase


Domain annotation for each model (and alignments):
>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   2.4e-15   1.4e-12     139     246 ..     389     497 ..     311     507 .. 0.80
   2 !   20.6   0.0   5.8e-08   3.4e-05     288     417 ..     512     636 ..     508     637 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 2.4e-15
   TIGR01326 139 identkavfletignPkldvlDiekvaevakkagvplivDntvatpylvrPlehG.adivvhsatkylgGhgtaigGvivdsgkfdwkkekfpeltePdpsYhGlkfte 246
                  + +  avf+e  +nP l+ +D+e++ ++a + +  ++vD+t++    v  l+ G ad v  s+tk ++G+g ai+G ++ + + +  +   +++++  +++ Gl+ ++
  MMETSP1061-20121228|4712_1 389 EESKWSAVFTEVPSNPLLQCPDLEALRNLADEYDFCVVVDDTIGNFLNVDLLDSGlADAVCTSLTKLVSGRGDAIAGSVITNPNTEKGRWMKEDMAKDRDAFGGLHEAD 497
                 3345579************************************************78***********************88776544433356777777777776555 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 5.8e-08
   TIGR01326 288 lerhvenalkvaefLekhpkvkkvnypgLasssehelakky..lekgagavlsfevkggkeaakkfidalkLasklanvgDakslvihPastthkqlseeeqlkaGvtkdlirlsvGienidDiiaDleqal 417
                   r +e ++ +a f+++hp+v+ v yp         l+ ky   + g+g+++s  +      ++ f d l++a k   +g   +lv+     +h     +  l+  v ++lir++vG+e+ d++++ ++ al
  MMETSP1061-20121228|4712_1 512 NTRINETTELLATFMNEHPDVDIVWYPKFVAP----LFTKYqhPNGGFGGLFSIHLGSHI-CQRTFYDLLDVA-KGPSLGTNFTLVCPYTLLAHYHEL-DFALSHNVPPNLIRIAVGLEDFDELKEKFAYAL 636
                 5677889999*****************98754....344441034569**9998885554.455588888876.56789**99*99866666776544.4566789********************999887 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   8.1e-21   4.7e-18     122     379 ..     374     636 ..     355     639 .. 0.79

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 8.1e-21
   TIGR02080 122 dqsdeealekalaek....pklvlietPsnPllrvvdiaklcklakaagavvvvdntflsPilqkPlalG.adlvlhsatkylnGhsdviaGaviakdkq.....laeelawwanalGvtgaafdsylllrGlrtlaarvreqernakkiveylqkqplvkkvyypglpdhagheiaakqqkGfGallsfelkGgeeevkkflkklklftlaeslGGvesliahpatmthaamekeareeaGikdellrlsvGledaddliadleqal 379
                 d +d ++l++ l+e+       v+ e PsnPll+  d+++l +la + +  vvvd+t    +  + l  G ad v  s tk + G  d iaG vi++ +      ++e++a+  +a G    a d+  ++     +  r ++ +++++ ++ +++++p v  v+yp +     +   ++ + GfG l+s  l G+    ++f + l + +   slG   +l++    ++h    + a ++  +  +l+r++vGled d+l + +  al
  MMETSP1061-20121228|4712_1 374 DENDLKLLTRILQEReeskWSAVFTEVPSNPLLQCPDLEALRNLADEYDFCVVVDDTIGNFLNVDLLDSGlADAVCTSLTKLVSGRGDAIAGSVITNPNTekgrwMKEDMAKDRDAFGGLHEA-DAMAMVYNSIDFPERNTRINETTELLATFMNEHPDVDIVWYPKFVAP-LFTKYQHPNGGFGGLFSIHL-GSHICQRTFYDLLDV-AKGPSLGTNFTLVCPYTLLAHYHELDFALSH-NVPPNLIRIAVGLEDFDELKEKFAYAL 636
                 67778888888876533114679**********************************877777777777779***********************9755411111345555555555555444.4554444444566677777777888999**************99865.4555677889*********9.666677889888876.5688**********99999999877777765.6999**************998887776 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0     2e-20   1.2e-17     141     380 .]     394     636 ..     366     636 .. 0.82

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 2e-20
   TIGR01325 141 kllfletPsnPlaelvdiaalaelahavGaklvvdnvfatPvlqqplklG.advvvysatkaidGqGrvlGGvilgseeliee..vakll...rstGpalspfnaWvllkGletlslrvqkqadsalklaefleeqpkvqavyyaglPdhPqaelakrqqsGgGtvvafdlkg...reaafkvldalelvdisnnlGdakslithPattthrrlspeeraalgigdglvrlsvGledvddlkadlkral 380
                  ++f e PsnPl +  d++al +la      +vvd+++   +    l+ G ad v  s tk + G+G ++ G ++++ ++ ++  +++ +   r +   l   +a  ++     +  r  + ++++  la f++e+p+v+ v y+     P     ++   G+G + +++l +   + + + +ld    v +   lG   +l+  P t      + +  ++ ++ + l+r++vGled d+lk+ ++ al
  MMETSP1061-20121228|4712_1 394 SAVFTEVPSNPLLQCPDLEALRNLADEYDFCVVVDDTIGNFLNVDLLDSGlADAVCTSLTKLVSGRGDAIAGSVITNPNTEKGrwMKEDMakdRDAFGGLHEADAMAMVYNSIDFPERNTRINETTELLATFMNEHPDVDIVWYPKFV-APLFTKYQHPNGGFGGLFSIHLGShicQRTFYDLLD----VAKGPSLGTNFTLV-CPYTLLAHYHELDFALSHNVPPNLIRIAVGLEDFDELKEKFAYAL 636
                 689**********************************************978*********************99987665554444444111555566777788888877777778999999*********************9875.588888888999*********976443444455555....45667788766666.57777666667778899*********************9887775 PP

>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   0.0   1.2e-18   6.8e-16     144     390 ..     392     638 ..     353     639 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 1.2e-18
   TIGR01328 144 ntkivyfetpanptlklidleavvrvakekgvkvivdntfatplltrpvalG.vdvvvhsatkyigGhgdvvaGvliGdael..lqrir..lvgvkdltGavispfdaflvlrGlktlavrmkresenaekvaeklkehpavekvlypGleehedrdiaakqmkkgGgllafelkggeadaakllnrlklirlavslGdaetliqhpasmthavvpkeereaaGiseglvrlsvGledvddvladlkqalea 390
                 +   v+ e p np l+  dlea+   a e +  v+vd+t    l  + ++ G +d v  s tk ++G gd +aG +i + ++   + ++  ++  +d  G  +   da+ ++     +  r  r  e++e +a +++ehp v+ v+yp +        ++ q  +gG    f +  g    ++ + +l  +    slG   tl+   + ++h     +   +  +  +l+r++vGled+d++   ++ al++
  MMETSP1061-20121228|4712_1 392 KWSAVFTEVPSNPLLQCPDLEALRNLADEYDFCVVVDDTIGNFLNVDLLDSGlADAVCTSLTKLVSGRGDAIAGSVITNPNTekGRWMKedMAKDRDAFG-GLHEADAMAMVYNSIDFPERNTRINETTELLATFMNEHPDVDIVWYPKFV---APLFTKYQHPNGGFGGLFSIHLGSHICQRTFYDLLDVAKGPSLGTNFTLVCPYTLLAHY-HELDFALSHNVPPNLIRIAVGLEDFDELKEKFAYALDK 638
                 45689************************************9999999***967********************99876544113444411555556666.5888899999888888999****************************765...44566777777765455666666677777777777889999********9755555554.44556677899***********************9985 PP

>> TIGR01329  cysta_beta_ly_E: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   1.3e-16   7.4e-14     117     380 ..     374     638 ..     279     641 .. 0.72

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 1.3e-16
   TIGR01329 117 dttdlekvkavlgdlpktk..lvllesPtnPlikivdirkiaeaakalnedalvvvdntmlspllcnPlelG.adivlesatkylaGhsdvmaGvlavkseeia.....kklyflinseGaglaPfdswlllrGiktlairlekqqenavaialfletrsrvaskvryaGlksepdfklhksqakGaGavlsfetGsvalskrlveaaklfaitvsfGsvnslismPcklshasidaevrkerdlpedlvrlsvGiedvedlikdlsaalva 380
                 d  dl+ +  +l++ +++k   v+ e P+nPl++  d++++ ++a + +    vvvd+t+   l+   l+ G ad v  s tk ++G  d +aG ++++ +        + ++   ++   gl   d++ ++     +  r  + +e +  +a+f++++++v   v y+ +   p f+ ++  + G G ++s+  Gs    + + +   + a   s+G+  +l+    +l+h   + +     ++p +l+r++vG+ed ++l++ +  al +
  MMETSP1061-20121228|4712_1 374 DENDLKLLTRILQEREESKwsAVFTEVPSNPLLQCPDLEALRNLADEYD--FCVVVDDTIGNFLNVDLLDSGlADAVCTSLTKLVSGRGDAIAGSVITNPNTEKgrwmkEDMAKDRDAF-GGLHEADAMAMVYNSIDFPERNTRINETTELLATFMNEHPDVD-IVWYPKF-VAPLFTKYQHPNGGFGGLFSIHLGSHICQRTFYDLLDV-AKGPSLGTNFTLVCPYTLLAHYH-ELDFALSHNVPPNLIRIAVGLEDFDELKEKFAYALDK 638
                 44555566678887665542289**********************9998..9*******************879********************8888754433011103333333333.48**********999999**********************887.7888876.5799*********************9888887765544.34679999999998888888865.446888999********************99999865 PP

>> TIGR01324  cysta_beta_ly_B: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.023        13      12      83 ..     252     325 ..     246     331 .. 0.82
   2 !   43.7   0.0   5.3e-15   3.1e-12     137     369 ..     394     631 ..     379     638 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.023
   TIGR01324  12 rlqgsvnPpvqrastvlldsdaasarakdkltyGirGtsttvalqdalaeleG..aagvilyPsGlaavtnall 83 
                 +++++   pv  + tvl++ d ++  +k         ts++  lq+ l++       +++l+PsG+a++ ++l 
  MMETSP1061-20121228|4712_1 252 FSKRVTCCPVDGTPTVLHSCDPSKCPEKSMSASDSDSTSAHEQLQKRLSAWTDvdPDNIFLVPSGMATIYKSLR 325
                 5667777788888999999999999999999999999999*****99998875125799*********999875 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 5.3e-15
   TIGR01324 137 kvvfleaPasltlevqdiPaiakaaraagvvvlidntwaagllfkalehgv.disiqaatkylaGhsdvllGtvaanesave..kllealy....llGqsvdaddaytvlrGlrtlgvrlkrhqesalaiakwleeqkevarvlhPalPsdpghelfkrdfsGssGlfsvvl.krlsqkevhafldalklfglgyswG...GyeslalnvqpelairrsikrdleGplirlhiGledvddlkad 369
                   vf+e P+   l+ +d+ a+ + a + +  v++d+t    l    l+ g+ d    ++tk ++G  d + G+v +n ++ +   ++e +      +G   +ad +  v   +  +  r  r +e++  +a +++e+++v  v++P +   p    ++    G  Glfs+ l  ++ q+    +ld  k  +lg  +     y  la   ++++a    + +++  +lir+ +Gled d+lk  
  MMETSP1061-20121228|4712_1 394 SAVFTEVPSNPLLQCPDLEALRNLADEYDFCVVVDDTIGNFLNVDLLDSGLaDAVCTSLTKLVSGRGDAIAGSVITNPNTEKgrWMKEDMAkdrdAFGGLHEADAMAMVYNSI-DFPERNTRINETTELLATFMNEHPDVDIVWYPKFV-APLFTKYQHPNGGFGGLFSIHLgSHICQRTFYDLLDVAKGPSLGTNFTlvcPYTLLAHYHELDFA----LSHNVPPNLIRIAVGLEDFDELKEK 631
                 569***********************************************834555789*****************9776431123344431111688888887766666665.67899999999999******************986.5888999999************8899999999999999987777666511145555555555544....667777889*************976 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   0.00023      0.13     131     188 ..     380     436 ..     366     453 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00023
   TIGR01141 131 edleavleaakekvklvflasPnnPtGnllkreeiekvleevedalVVvDeAYieFse 188
                   ++ ++e +++k   vf   P+nP  ++ + e ++++++e  d  VVvD+  ++F +
  MMETSP1061-20121228|4712_1 380 LLTRILQEREESKWSAVFTEVPSNPLLQCPDLEALRNLADEY-DFCVVVDDTIGNFLN 436
                 344445558899999*******************99999997.9*******9999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 2511.67
//
Query:       MMETSP1061-20121228|4718_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|4717_1  [L=963]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-34  117.2   0.0    2.8e-34  116.4   0.0    1.3  1  TIGR00417 speE: spermidine synthase


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   0.0   6.9e-38   2.8e-34      16     192 ..     410     615 ..     398     689 .. 0.76

  Alignments for each domain:
  == domain 1    score: 116.4 bits;  conditional E-value: 6.9e-38
   TIGR00417  16 vdkvLyeeksefqdvl..ifeteefGkvlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpkls.ga.........lddervdlkidDGvkflrdt...............ekkfDviivDstdPvGp...aetlf.ekefyelvkkalnedGvivaq.seslllq 192
                 vd+  yee+ e+ +    +f+     ++l lDgvvq t +   +yhe ++  ++++h+npk+v+++GGG+ ++lre +kh++ve++++veiD  ++e+sk+ylp+ + ++         +dd+rv ++  D +k+ r+                e+kfDv+i D+ dP  +    e+l+ + +f + + ++l+e+Gv+ +q  es+++ 
  MMETSP1061-20121228|4717_1 410 VDSSKYEEHREYMESHphLFR---ADRLLYLDGVVQSTLQGLAAYHEALVQPAMFTHPNPKRVAIVGGGECATLRETLKHNTVETVVMVEIDPVIVEVSKHYLPEWNdCSmfkgssrycMDDPRVRMHHLDALKWFRNRfsdearleghelygsEEKFDVVILDALDPQNAvdfVEALYgDGAFLNSLFNSLTENGVLLTQvGESVYIG 615
                 555666666655543211333...3579****************************************************************************98776533333444469***************9999999*************************765222678983457999***************66677663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (963 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.11s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 3435.28
//
Query:       MMETSP1061-20121228|4706_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-97  324.1   0.1    2.7e-97  323.8   0.1    1.0  1  TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit
    3.7e-25   86.7   1.4      5e-15   53.4   0.2    2.4  2  TIGR03323 alt_F1F0_F1_gam: alternate F1F0 ATPase, F1 subunit gamma


Domain annotation for each model (and alignments):
>> TIGR01146  ATPsyn_F1gamma: ATP synthase F1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.8   0.1  1.3e-100   2.7e-97       4     286 .]      57     367 ..      55     367 .. 0.96

  Alignments for each domain:
  == domain 1    score: 323.8 bits;  conditional E-value: 1.3e-100
   TIGR01146   4 lkeirkrikSvkntkkITkAmklVaasklrraqerveaarpyaeklaevlknlaaklke..vdhplllkkrevkkvlllvvtsdrGLcGgynsnvlkkveeklkelkeegkevklvviGkkgkeffkrreiniaasvtglseqptfeeaqeiadklleafesgevdkveivynkfvsllsqeptvkkllplseke..eek...........................kleeklefepdeeeilesLlprylesqiyrallesaasElaaRmtAMdnAtdNAkdlikkltlsyNraRQaaITqElieivaGasal 286
                 +++ir+ri+SvkntkkIT AmklVaa+k+rraq++v a+rp++e+l+ v++ l a+l    +d p ll++revkkv l vvt+drGLcGgyns ++kk+e++++el  +g+ev++v+iG kg ++f+rr+ +i + +    ++p+++ea +i+++ll+ f +ge+d++e++y+kfvsl+++ p+v++l+p+s+++  + +                           ++ ++++fe+d+ +i++s+lp yl+ q++r l+es+asElaaRm  M++A+dNA++l +kl+l+yNraRQaa+TqE++eiv+G +al
  MMETSP1061-20121228|4706_1  57 ANAIRDRITSVKNTKKITMAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIARLGGeaMDLP-LLTQREVKKVTLTVVTGDRGLCGGYNSFMIKKAEARYNELVGQGIEVDMVLIGVKGIAYFERRGFPIRKTFPC-GQNPNAKEALAISEELLNTFLAGETDAIELLYTKFVSLIASTPSVRTLVPFSASDitQ-QgdevfqltsesgdfsvertelevaepqEFPNDMIFEQDPIQIVNSILPLYLNGQVLRTLQESVASELAARMASMQAASDNAGELAQKLSLEYNRARQAAVTQEILEIVSGSAAL 367
                 578****************************************************9988889999.999****************************************************************999976.9*************************************************88888752.335669999999***************99**********************************************************************************9997 PP

>> TIGR03323  alt_F1F0_F1_gam: alternate F1F0 ATPase, F1 subunit gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   7.9e-12   1.6e-08       1     131 [.      60     193 ..      60     247 .. 0.86
   2 !   53.4   0.2   2.5e-18     5e-15     209     285 .]     291     367 ..     278     367 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 7.9e-12
   TIGR03323   1 lrrkiesaadLksvvrtmkalaavsirqYedavraLddYyetveLGLavvlreeelaaasasgkskkesgktgaivlGsDqGlvGqfnevllefvveelaelkg...ekevwavGervasrledsglkieelfa 131
                 +r +i s ++ k +  +mk +aa+++r+ +dav a   + et++     ++ +   +a+  +  +++e++k++  v+  D+Gl+G +n  +++++  +++el g   e  +  +G +  ++ e +g +i+++f 
  MMETSP1061-20121228|4706_1  60 IRDRITSVKNTKKITMAMKLVAAAKVRRAQDAVLATRPFSETLQSVFGGLIARLGGEAMDLPLLTQREVKKVTLTVVTGDRGLCGGYNSFMIKKAEARYNELVGqgiEVDMVLIGVKGIAYFERRGFPIRKTFP 193
                 578999**************************************99999999999999999989999999999999********************99998776222456778888888888888888888875 PP

  == domain 2    score: 53.4 bits;  conditional E-value: 2.5e-18
   TIGR03323 209 ekeetlsalireylfvsLfraaaesLasenasrlaamqraeknidelldeLnrrfhrlrqsaideeLfdvvsGfeaL 285
                 ++ + +++++  yl   + r+  es+ase a+r+a+mq+a  n  el ++L+ +++r rq+a++ e++++vsG  aL
  MMETSP1061-20121228|4706_1 291 DPIQIVNSILPLYLNGQVLRTLQESVASELAARMASMQAASDNAGELAQKLSLEYNRARQAAVTQEILEIVSGSAAL 367
                 566777888888999999*******************************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1942.88
//
Query:       MMETSP1061-20121228|4721_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          6    4.6  16.4        2.1    6.0   5.0    2.9  2  TIGR03949 bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family


Domain annotation for each model (and alignments):
>> TIGR03949  bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   1.2    0.0044        18      20      29 ..       7      18 ..       3      19 .. 0.72
   2 ?    6.0   5.0   0.00052       2.1      18      41 ..      50      73 ..      31      75 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0044
   TIGR03949 20 gvAi..cvggga 29
                g+Ai  c+gg++
  MMETSP1061-20121228|4721_1  7 GFAIgiCIGGVV 18
                555666999987 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00052
   TIGR03949 18 pigvAicvgggaaaaagagftaGa 41
                p+g++ ++gg++aa++gagf+ G 
  MMETSP1061-20121228|4721_1 50 PQGFVLAAGGLLAAGVGAGFDDGV 73
                89999999***********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 615.95
//
Query:       MMETSP1061-20121228|4719_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   19.1   6.4    0.00078   17.6   4.5    1.7  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P
  ------ inclusion threshold ------
        2.3    3.5   8.4        2.7    3.3   5.8    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   4.5   3.8e-07   0.00078       5     105 .]      16     112 ..      13     112 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3.8e-07
   TIGR03685   5 yaaLllheagkeineenlkkvleaaGvevdearvKalvaaLedvdieeaiekaaaapvaaaaaaaaaaeaaeeekeeeeeeeeekeeeeeealegLgaLFG 105
                 +a L l++ g e++ e++ ++lea+G +  ea    + a +  ++  + i +  aap    ++ aa a+  + +++e  eeee +ee eeea +g g LFG
  MMETSP1061-20121228|4719_1  16 FAILALYDGGAEVTSEQIGALLEATGNTDVEAFYPIIFAQF--LNDPKKIGEMIAAPGGGGGGGAAGAAGGDGAAAE--EEEEVEEEVEEEAPQGGGGLFG 112
                 78899*********************999999888888865..3333444444455555555555544444444433..5677778888888899999998 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   5.8    0.0013       2.7     964     989 ..      77     102 ..      61     107 .. 0.72

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0013
   TIGR00927 964 GvdgeggsdGGdseeeeeeeeeeeee 989
                 G+ g  g+dG  +eeeee eee eee
  MMETSP1061-20121228|4719_1  77 GAAGAAGGDGAAAEEEEEVEEEVEEE 102
                 66777788888888777777774444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 688.64
//
Query:       MMETSP1061-20121228|4728_1  [L=1235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 3881.11
//
Query:       MMETSP1061-20121228|4729_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1360.06
//
Query:       MMETSP1061-20121228|4722_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-198  658.6   0.0     2e-198  658.4   0.0    1.0  1  TIGR00389 glyS_dimeric: glycine--tRNA ligase
      1e-08   32.4   0.0    2.2e-05   21.4   0.0    2.4  2  TIGR00409 proS_fam_II: proline--tRNA ligase
    9.6e-07   25.9   0.0    0.00013   18.8   0.0    2.3  2  TIGR00408 proS_fam_I: proline--tRNA ligase
    2.3e-06   24.6   0.0      0.013   12.2   0.0    2.9  3  TIGR00418 thrS: threonine--tRNA ligase
      0.002   15.0   0.0      0.033   11.0   0.0    2.4  2  TIGR00442 hisS: histidine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  658.4   0.0  2.4e-201    2e-198       2     563 ..      72     656 ..      71     658 .. 0.97

  Alignments for each domain:
  == domain 1    score: 658.4 bits;  conditional E-value: 2.4e-201
   TIGR00389   2 ereklvsllkrrgflfqsfeiYgGlaglvDygPlGaelknnikkawrkffileeevlevdspiltpeevlkasGHvdkFtDalveckkckevfRaDhlveevlekeleg.....................lsgkelkellekydincPkckgenleevrsfnLlFeteiGvsgkkkgylRPEtAqGiFinFkkllefkreklPFgvaqiGksfRnEisprqgllRvrEFeqaEiefFvdPeekshekFeevkdeklkllprqleesg..pvkltvgeavesgivenevlayfiarvkrFlleigidedklrfrqhlknelAHYAkdcwDaelktsyGwiEvvGiadRtdyDLkqHskkskkelsvfekldepkevkkreielnkkllGpkfrkdakkvesalenlse..ddleeveeeleeegkfiikveveldkelveikevekvvkvekyiPsviEpsfGidRiiyallehsyqkevdeeeRevlrlkpkvaPikvlvlplvnkeelkeiakeiakaLrkeeiiikyddsgs.iGkrYaraDeiGtpfavtiDfetleDetvtlReRdslkqvRvkieelvsalkk 563
                 +r+++ +l+ r+ f+++sfei gG+ gl+D+gP+ + lk  + + wrk+f+l e++le++++ ltpe vlk+sGHvd+FtD +v++  + e fRaD+l e++++  le+                     +s +el++ll ky+ + P   ge+++    fnL+F+t+iG+ g + gylRPEtAqG F+nF++ll+++ +k+PF+ aqiG  fRnEi+pr+gllRvrEF + Eie+Fv+P++ksh++F  v+d++l l+ r+ +  +  + +l +geav+ g+v+ne+l+yf+ar++ ++ +ig+d+++lrfrqhl++e+AHYA+dcwD e+k syGw E+vG adR+ yDL +H+k ++  +   +k+d+p+e++  +++ + k++G  f+kda+ v  al+nl+e  +d e ++++le++gk++++  +e++ke+v+ ++ +k v+  k+ PsviEpsfG++Ri+y+lleh++  ++++e+R v++++p+vaP+k +vlp+++  e+++i   ia  L + ++ +++d+s + +G+rYar De+G+pfa+t+Df+tl+D++vt+ReRds+ qvR   +e+++++ +
  MMETSP1061-20121228|4722_1  72 NRKSFDDLIIRKMFVVPSFEIHGGVKGLFDLGPPACGLKAAMVDLWRKHFVLAENMLEMECTNLTPEVVLKTSGHVDRFTDLMVKDPATSECFRADKLLEDAIDDLLEEnptmdtetreehlrvqrqadaYSPEELDKLLLKYECKGP--SGEAYSPSFPFNLMFKTSIGPEGTSVGYLRPETAQGLFVNFRRLLDLNAQKMPFAAAQIGLGFRNEIAPRSGLLRVREFCMGEIEHFVNPDDKSHPNFASVADKELVLFGRDDQLGTgkTKTLKIGEAVKIGLVNNETLGYFMARTQLYMEKIGMDPERLRFRQHLATEMAHYAADCWDLEIKSSYGWVECVGHADRACYDLDVHAKATNTPMVATVKYDTPQEIEVAKLKFDRKKIGMVFKKDARTVSGALDNLAEswKDFEPIAKALETDGKVVVDG-FEVTKEMVSWEQTTKKVHEAKFTPSVIEPSFGMGRILYSLLEHCFYIRENDEQRCVMKFNPQVAPQKCAVLPISSSPEFNAIVDGIAASLMEYDLATRVDKSTAaLGRRYARSDEVGVPFAITVDFDTLKDDSVTIRERDSMIQVRLPKSEVPHVIYD 656
                 566778899*********************************************************************************************99998889**************************************..8999*********************************************************************************************************976665544577889**********************************************************************************************************************************98634799**************996.9****************************************************************************************************9998*******************************************9999998865 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.7e-08   2.2e-05     126     166 ..     269     309 ..     266     324 .. 0.83
   2 !    8.5   0.0   0.00021      0.18     459     558 ..     547     647 ..     528     656 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.7e-08
   TIGR00409 126 kqlPvnlYqiqtKfRDEiRPRfGllRgREFimKDaYsFhsd 166
                 +++P    qi   fR+Ei PR GllR REF m +   F + 
  MMETSP1061-20121228|4722_1 269 QKMPFAAAQIGLGFRNEIAPRSGLLRVREFCMGEIEHFVNP 309
                 579999**************************876666655 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00021
   TIGR00409 459 krDekGiiWp..kaiAPyevvivvsnvkdeeqkklaeevyselkakgvdvllDdrneraGvkfrdseliGiplavvvGkksldnkeiEvkkrrngekqlikk 558
                 ++De+ ++     ++AP + ++++    + e + +++ + ++l + +    +D+  + +G + + s+ +G+p+a++v   +l+++++ +++r +  +  + k
  MMETSP1061-20121228|4722_1 547 ENDEQRCVMKfnPQVAPQKCAVLPISSSP-EFNAIVDGIAASLMEYDLATRVDKSTAALGRRYARSDEVGVPFAITVDFDTLKDDSVTIRERDSMIQVRLPK 647
                 56777666443379************999.788999****************************************************99998766555555 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0035       2.8     102     155 ..     248     302 ..     244     318 .. 0.84
   2 !   18.8   0.0   1.6e-07   0.00013     277     383 ..     558     660 ..     525     665 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0035
   TIGR00408 102 lRP.tsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkhtrPllRtrEflfkE 155
                 lRP t+   + n+ ++   + + +P+   qi   fR E      llR+rEf   E
  MMETSP1061-20121228|4722_1 248 LRPeTAQGLFVNFRRLLDLNAQKMPFAAAQIGLGFRNEIAPRSGLLRVREFCMGE 302
                 677566677788888889999*******************7778*******9776 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 1.6e-07
   TIGR00408 277 PpkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdnrpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekkKvevsldeleekvkellee 383
                  p+vap +  v+p i       +  +  + ++  L + ++   +d++   +G+++ + +  G+P+ + v+   ++ ++v++  Rd++ +v ++  e+ + + +++++
  MMETSP1061-20121228|4722_1 558 NPQVAPQKCAVLP-ISSSP---EFNAIVDGIAASLMEYDLATRVDKSTAALGRRYARSDEVGVPFAITVDFDTLKDDSVTIRERDSMIQVRLPKSEVPHVIYDIVHN 660
                 4789999999999.54443...45666678889999999999*****************************99************9999999999998888888766 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.26   2.1e+02     206     248 ..     112     155 ..     106     162 .. 0.76
   2 !    8.7   0.0   0.00019      0.15     280     323 ..     269     312 ..     243     324 .. 0.81
   3 !   12.2   0.0   1.6e-05     0.013     451     557 ..     531     650 ..     509     656 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.26
   TIGR00418 206 lledfvrek.llkrgyeevetPiladlelweisghldkykermf 248
                  + d++r++ +l +++ e+e  +l+     ++sgh+d++ + m 
  MMETSP1061-20121228|4722_1 112 AMVDLWRKHfVLAENMLEMECTNLTPEVVLKTSGHVDRFTDLMV 155
                 556666655134556678888899999999**********9985 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00019
   TIGR00418 280 rdLPlrlaelgvvhRyEksGeLvGLkRvRgftldDaHifct.edQ 323
                 +++P+  a++g  +R+E     +GL RvR+f++     f++  d 
  MMETSP1061-20121228|4722_1 269 QKMPFAAAQIGLGFRNEIAP-RSGLLRVREFCMGEIEHFVNpDDK 312
                 789**************876.59**********998778773444 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 1.6e-05
   TIGR00418 451 ieRfiaiLlEkaagel............PlwLaPvQvrvipvs..ekhldyakkvaeklkkegirvdvddrneklgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleel 557
                 + R++++LlE+                 P  +aP   +v+p+s   ++   +  +a  l + ++   vd++   lg +   +    +p+ + v    +++ +vt+Rer++  + +++  e+
  MMETSP1061-20121228|4722_1 531 MGRILYSLLEHCFYIRendeqrcvmkfnP-QVAPQKCAVLPISssPEFNAIVDGIAASLMEYDLATRVDKSTAALGRRYARSDEVGVPFAITVDFDTLKDDSVTIRERDSMIQVRLPKSEV 650
                 55667777776544435566666666644.58**********9656899999**************************99999999*******9999***********9887777766665 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.038        31      75     128 ..     248     306 ..     233     323 .. 0.72
   2 !   11.0   0.0     4e-05     0.033     322     402 ..     563     643 ..     550     647 .. 0.86

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.038
   TIGR00442  75 LRpelTapvvRavve..nklelkkpfklyyigpvFRyE.rpqkG..RyRqFhQldvevv 128
                 LRpe   ++   + +    +++k pf   +ig  FR+E  p +G  R+R+F   ++e +
  MMETSP1061-20121228|4722_1 248 LRPETAQGLFVNFRRllDLNAQKMPFAAAQIGLGFRNEiAPRSGllRVREFCMGEIEHF 306
                 6777666654333220023445669*************64666677*****98888766 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 4e-05
   TIGR00442 322 kkkadvlvvaldeeaeaealklaeklrkagirvevdlegkklkkqlkyadkkgakfvvilgedelekgkvtlkdletgeqe 402
                 ++k+ vl ++ + e +a +  +a++l + ++ ++vd +++ l++++ + d+ g++f+++++ d l++++vt+++ ++  q 
  MMETSP1061-20121228|4722_1 563 PQKCAVLPISSSPEFNAIVDGIAASLMEYDLATRVDKSTAALGRRYARSDEVGVPFAITVDFDTLKDDSVTIRERDSMIQV 643
                 566777777777888888889****************************************************98876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.44
# Mc/sec: 2135.82
//
Query:       MMETSP1061-20121228|4731_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 522.22
//
Query:       MMETSP1061-20121228|4735_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.23
# Mc/sec: 332.84
//
Query:       MMETSP1061-20121228|4732_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 1298.60
//
Query:       MMETSP1061-20121228|4733_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0069   13.8   0.1      0.012   13.0   0.0    1.4  1  TIGR01713 typeII_sec_gspC: general secretion pathway protein C
  ------ inclusion threshold ------
      0.025   11.7   0.0      0.036   11.2   0.0    1.2  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase


Domain annotation for each model (and alignments):
>> TIGR01713  typeII_sec_gspC: general secretion pathway protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.9e-06     0.012     209     250 ..     625     668 .]     619     668 .] 0.91

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.9e-06
   TIGR01713 209 LqdgDiavalNgldlrde..eeakqvlqslaeetelkltveRdG 250
                 L  gDi+v++Ngl + +   e ++ +l +l++e +l l+v+R+G
  MMETSP1061-20121228|4733_1 625 LLTGDIIVSINGLRVGSSglETVRGILFRLKQEVDLMLEVIRKG 668
                 678************986569*********************98 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.8e-05     0.036     394     429 ..     102     137 ..      99     138 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.8e-05
   TIGR03467 394 tplpnlfLAGDwtatgyPATlEgAvrSGvqAAeavl 429
                  ++ +lf AG+ t +  P+   gA+ SG +AA+ v+
  MMETSP1061-20121228|4733_1 102 AEVMRLFFAGEHTTALHPSVTHGAMLSGIRAAQEVV 137
                 6789*****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 2593.20
//
Query:       MMETSP1061-20121228|4730_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 2311.81
//
Query:       MMETSP1061-20121228|4737_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-98  326.2   0.4    6.9e-98  325.9   0.3    1.1  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
    4.5e-93  310.4   0.7    6.1e-93  309.9   0.5    1.0  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    3.2e-89  297.6   0.3    5.6e-89  296.8   0.2    1.3  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    2.6e-88  294.6   0.1    3.5e-88  294.1   0.1    1.0  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
    2.9e-78  261.6   0.2    3.6e-78  261.3   0.2    1.0  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    5.1e-78  260.9   0.6    6.8e-78  260.5   0.4    1.0  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    1.7e-71  239.1   0.8    3.1e-71  238.3   0.6    1.3  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    5.4e-67  224.3   0.8    7.6e-67  223.8   0.5    1.1  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    9.3e-63  210.5   0.1    1.2e-62  210.0   0.0    1.0  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    2.4e-54  182.5   0.6      3e-54  182.2   0.4    1.0  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    1.6e-36  123.8   0.0    3.5e-36  122.7   0.0    1.4  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    6.6e-32  108.3   1.3    4.7e-31  105.5   0.9    1.9  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    8.1e-22   75.0   1.9    3.8e-21   72.7   0.3    2.0  2  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN
    0.00023   17.9   0.9    0.00047   16.9   0.7    1.5  1  TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
     0.0069   12.4   0.1       0.01   11.8   0.1    1.2  1  TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB


Domain annotation for each model (and alignments):
>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  325.9   0.3  2.5e-100   6.9e-98      13     443 ..     111     536 .]     101     536 .] 0.94

  Alignments for each domain:
  == domain 1    score: 325.9 bits;  conditional E-value: 2.5e-100
   TIGR01804  13 kvleiinPanqeviaevaeatredvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffaGladkleGeiielgipsfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkimaaaaeelkkvtlelGGksPlivfddadlelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGffiePtvfadvtddmtivreeifGPvlsvlefe.seeevikrandteyGlaagvftadleraervaerlkaGtvwindynl..spaevPf 443
                 + l   nPa++e+i +v+ +t+e+ e+ i +a+ +q+ew   s +er   l++  + l    + + +l   + Gk++ e+       + d  e+f  l ++l+ ++        + v r p Gvv+ +++wn+Pl   +  + P+la+Gn++v+kPse+ P t   ++++l+ + lP Gv+ + +G+ ++vG++lv+h+++++v++tG+ +tGkki++aaa +lk+v le+GGk+P+iv ddadle a+  a++ ++ ++Gqvc +  r++v ++i ++f++     +k  k+G+g+d++  +GP++s  ++d+v   +e + + gakl+   + p+ e+ ++G f+  tv+adv+++m +   e fGPv+++ +f+ +eee++++andteyGl ++v+t+d e+a+r+a+ + aG v in y l  + ++ P+
  MMETSP1061-20121228|4737_1 111 NCLVNTNPATGEIISRVRCTTSEQLEEIIGTAKTSQREWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMGKPIGEAKEEVEFAVGDLDEYFRILLESLKDKTY-----GKSTVVRHPYGVVAIMSPWNFPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQKV-LPPGVIQLAQGS-GSVGAALVAHPEIDLVAMTGSSATGKKILEAAAPQLKRVILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDEFQELARVAAKDYKVGNGMDADNLVGPMVSNMQKDQVHAQVEDALSKGAKLLHRSETPQGEN-EKGSFYPVTVLADVDENMELFTKETFGPVVAIAKFDgTEEEAVRLANDTEYGLGSSVYTKDSEKANRIAALIDAGQVGINCYPLdsMGVQCPW 536
                 4556679*************************************************************************7666677889999***99998876543.....45779**********************************************99999**9987.9***********.68*******************************************************************************************9999999**************************************************99.***********************************86799*****************************************964115566666 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  309.9   0.5   2.2e-95   6.1e-93       2     415 ..     116     525 ..     115     534 .. 0.95

  Alignments for each domain:
  == domain 1    score: 309.9 bits;  conditional E-value: 2.2e-95
   TIGR01780   2 vnPatGekigkvpevsveeveeaieaaeealktykeltakerakllrkwyelilenkddlaklltlenGkplkeakgevlyaasyleWfaeeakrvyGdviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsastvkkvslelGGnaPlivfddadldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgG..dkreekggnffePtvlsdvtadmlvakeetfGPlapvfkfd.deeevvalandtevGlaayffskdlakiirvaeelevGlvgvntg 415
                 +nPatGe+i++v  ++ e+ ee i +a+ + + +++ + +er +ll++ ++ + +  d +++l+ +e Gkp+ eak ev++a + l+    e  r+  + ++ ++  k   v+++P Gv+ai++PWnfP   i   a ++la+G tvvvkP+e  P +   ++r+ +k  +P gv+++  +s+  vG  l+++P +  v++tGs+a+Gk +l+ +a ++k+v le+GG+ P+iv ddadl++a ++a+     n+gq+c   +r+yv +s+ydef +    + k  kvG+G+d +  vGp++++   ++v++++eda++kGak++      + e+++g f+  tvl+dv+++m++ + etfGP++++ kfd +eee+v landte+Gl + +++kd +k  r+a  ++ G vg+n  
  MMETSP1061-20121228|4737_1 116 TNPATGEIISRVRCTTSEQLEEIIGTAKTSQREWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMGKPIGEAKEEVEFAVGDLD----EYFRILLESLKDKTYGKS-TVVRHPYGVVAIMSPWNFPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQK-VLPPGVIQLAQGSG-SVGAALVAHPEIDLVAMTGSSATGKKILEAAAPQLKRVILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDEFQELARVAAKDYKVGNGMDADNLVGPMVSNMQKDQVHAQVEDALSKGAKLLHRSetPQGENEKGSFYPVTVLADVDENMELFTKETFGPVVAIAKFDgTEEEAVRLANDTEYGLGSSVYTKDSEKANRIAALIDAGQVGINCY 525
                 69**********************************************************************************996....557999999998887766.578*********************************************9999999877.59*******99986.69*******************************************************************************************9999********************************************87733577899**********************************945678**************************************975 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  296.8   0.2   2.1e-91   5.6e-89       2     444 ..      99     527 ..      98     532 .. 0.93

  Alignments for each domain:
  == domain 1    score: 296.8 bits;  conditional E-value: 2.1e-91
   TIGR03216   2 knfidGafvesektfedispvdgkviaevaeagkeevdaavkaaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvkevslelGGknaaivfadadldaavegvlrsaflntGqvclgtervyverpifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtglpdsarvvkeeifGpvchvapfd.seeeviarandtayGlaasvwtedlsrahrvakklevGvvwvnswfl 444
                 +n ++G  +++++ + +++p++g++i++v  ++ e++++ + +a+++++ ew+k s +er++llk+  +e+ +  d++++  v + Gkp   a++ ++  ++ ++  +  ++     e+++ +t  Gk   + +vr+p Gvv+++spwn+pl  +     p+la Gntvvvkpse  p+t +l+  ++++v +p+Gv  + +G G  s G+ l+ hp++d +++tG + tG+ i++aaa  +k v le+GGk++ iv  dadl++a +  +  +++ntGqvc + er+yv   i+d+f +  + +a+++k+G  +d +  +Gp++s+  +d+v +  + a ++Ga+++    +p+   e+++G++   t++++++++    ++e fGpv  +a fd +eee++++andt+yGl +sv+t+d ++a r+a+ +++G v +n++ l
  MMETSP1061-20121228|4737_1  99 RNMVQGVLIDDDNCLVNTNPATGEIISRVRCTTSEQLEEIIGTAKTSQR-EWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMGKPIGEAKE-EVEFAVGDLDEYFRIL----LESLKDKTY-GK---STVVRHPYGVVAIMSPWNFPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQKV-LPPGVIQLAQGSG--SVGAALVAHPEIDLVAMTGSSATGKKILEAAAPQLKRVILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDEFQELARVAAKDYKVGNGMDADNLVGPMVSNMQKDQVHAQVEDALSKGAKLLHRSETPQ--GENEKGSFYPVTVLADVDENMELFTKETFGPVVAIAKFDgTEEEAVRLANDTEYGLGSSVYTKDSEKANRIAALIDAGQVGINCYPL 527
                 6899****************************************99876.6**************************************998865.5666666655444443....344444433.44...4479*****************9999999******************************98.9*******98765..8999*****************************************************************************************99****************************************************8..567789*********************************66999***************************************9865 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.1   0.1   1.3e-90   3.5e-88       9     438 ..     106     524 ..      99     529 .. 0.94

  Alignments for each domain:
  == domain 1    score: 294.1 bits;  conditional E-value: 1.3e-90
   TIGR02299   9 lvasesgetfetlsPadnevlasvakGgaedvdkavkaakkafkkwaelkaaerkklllkladliekhadeiavlesldtGqalrlvrkavaraaenfrffadkaeeakdgetlpvdeflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrngadtlkrlslelGGksPvivfddadleraldavvfmifslnGerctassrllvqesiaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfk.deeealelandieyGlagyvwtedvgralrvaaaleaGmiyvns 438
                 l++  + + + + +Pa+ e +++v   + e++++ + +ak++ ++w++ +  er  ll+     +++ +d +  l   + G+++   +++v  a  ++  +     e  +++t+ + +     vr+p Gvv++++Pwn P+        P+la Gntvv kp+e  P t a + +++++  lP+Gv+ l +G G   G+alv+hp++ +v+++G++atG++i++++a++lkr+ le+GGk+P+iv ddadle+a   +v+   s+ G+ c +  r++v +si+++f e  +  +k  +vG+ +d +  vGP++++   ++v++ +e a  +Ga++l   ++ ++    e ++G +   tvl+d+d++m +  +e fGPv+++  f+  eeea++land+eyGl + v+t+d ++a r+aa ++aG + +n 
  MMETSP1061-20121228|4737_1 106 LID--DDNCLVNTNPATGEIISRVRCTTSEQLEEIIGTAKTSQREWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMGKPIGEAKEEVEFAVGDLDEYFRILLESLKDKTYGKST----VVRHPYGVVAIMSPWNFPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQK-VLPPGVIQLAQGSGS-VGAALVAHPEIDLVAMTGSSATGKKILEAAAPQLKRVILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDEFQELARVAAKDYKVGNGMDADNLVGPMVSNMQKDQVHAQVEDALSKGAKLLHRSETPQG----ENEKGSFYPVTVLADVDENMELFTKETFGPVVAIAKFDgTEEEAVRLANDTEYGLGSSVYTKDSEKANRIAALIDAGQVGINC 524
                 444..34578899*********************************************************999999*******************99998888999899999998875....58*****************99999999**************************9976.6************96.69*******************************************************8766666668*************************************************************************98555444....8899*********************************94699***********************************998885 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.3   0.2   1.3e-80   3.6e-78       5     433 ..     101     524 ..      97     530 .. 0.91

  Alignments for each domain:
  == domain 1    score: 261.3 bits;  conditional E-value: 1.3e-80
   TIGR03374   5 liegklvagegekqavynpatgevileiaeasaeqvdaavraadaafaewgqttpkaraelllkladaieenaevfaklesrncgkplhavlndeipaivdvfrffagaarclsglaageyleghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakdilpagvvnvlfgrgktvgdaltghekvrmvsltgsiatgehilahtaasikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgiydelveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggek...vkgkgyyfaptllagakqddaivqkevfgpvvsitvfd.deeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvnt 433
                 +++g+l++ + + +   npatge+i  +  + +eq++  + +a+++  ew + +   r +ll      +   ++ + +l  ++ gkp+  + ++   a+ d+  +f      l+  + g       s + r p gvva ++pwn+pl        p+la+gn vv+kpse+ p t   + ++++ +lp+gv+++  g g +vg al  h+ + +v++tgs atg++il+ +a+ +kr  +e+ggk p+iv ddad+++ ++    +   n+gq c +  riy+  +iyde+ e    a    k+g+  d    +gp++s+ + ++v a ve+a + +  k++   e     + kg ++  t+la+  ++ ++  ke fgpvv+i+ fd  ee+ vr and++ygl ssv+tkd  +a r++a ++ g   +n 
  MMETSP1061-20121228|4737_1 101 MVQGVLIDDD-NCLVNTNPATGEIISRVRCTTSEQLEEIIGTAKTSQREWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMGKPIGEAKEEVEFAVGDLDEYFRILLESLKDKTYG------KSTVVRHPYGVVAIMSPWNFPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQKVLPPGVIQLAQGSG-SVGAALVAHPEIDLVAMTGSSATGKKILEAAAPQLKRVILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDEFQELARVAAKDYKVGNGMDADNLVGPMVSNMQKDQVHAQVEDALSKGA-KLLHRSETpqgENEKGSFYPVTVLADVDENMELFTKETFGPVVAIAKFDgTEEEAVRLANDTEYGLGSSVYTKDSEKANRIAALIDAGQVGINC 524
                 7899999876.556778**********************************************9999999999***************999888778*********8776666665554......3667789***************99999999******************************************99.59*******************************************************************************************9999**********************************9966543.333333330003446789999****************************45899*******************************999988886 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.5   0.4   2.5e-80   6.8e-78      36     467 ..     101     523 ..      75     527 .. 0.93

  Alignments for each domain:
  == domain 1    score: 260.5 bits;  conditional E-value: 2.5e-80
   TIGR01237  36 vinGeeveteakidsinpadksevvGkvakasvedaeqalqaakkafeewkktdveeraaillkaaailkrrrhelsallvlevGkiyaeadaevaeaidfleyyaremiklakskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaegklvlg....gedddskGyfikptifkdvdrkarlaqeeifGpvvavlrakdf.dealeiansteygltGgvisnsrerierakaefevGnlyfn 467
                 +++G  ++ ++ ++  npa + e++ +v   + e+ e+ + +ak +  ew+k ++eer+ +l    + l      +  l+v e+Gk++ ea  ev  a+  l+ y r +++  k+         k   +  p Gv  ++spwnfpl  ++ ++  ++ +Gn+vv+kp+e  +   a +v il++  lp+Gv+q   G+Gs vG  lv hp++ l+++tGs + G +i e aa        lkrvi e+GGkd +iv ++ad+e+a++ av+ ++  +Gq c ++ r+ v +++yde+ e    a+k  kvg++ +ad  vgp++ ++  d+++  +e + ++g  +l      +++++kG f   t+++dvd +  l  +e fGpvva+ +     +ea+ +an+teygl  +v+++  e+ +r +a  + G + +n
  MMETSP1061-20121228|4737_1 101 MVQGVLIDDDNCLVNTNPA-TGEIISRVRCTTSEQLEEIIGTAKTSQREWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMGKPIGEAKEEVEFAVGDLDEYFRILLESLKD-----KTYGKSTVVRHPYGVVAIMSPWNFPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQK-VLPPGVIQLAQGSGS-VGAALVAHPEIDLVAMTGSSATGKKILEAAAP------QLKRVILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDEFQELARVAAKDYKVGNGMDADNLVGPMVSNMQKDQVHAQVEDALSKGAKLLHrsetPQGENEKGSFYPVTVLADVDENMELFTKETFGPVVAIAKFDGTeEEAVRLANDTEYGLGSSVYTKDSEKANRIAALIDAGQVGIN 523
                 7889999***********9.579***************************************************************************97776666665554422.....23346789********************99********************************87.5*************8.8***************************9984......69**********************************************************9999************************************9998665554665678999*********************************9876268*****************************9999998777 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.3   0.6   1.1e-73   3.1e-71       8     429 ..     102     523 ..      95     530 .. 0.87

  Alignments for each domain:
  == domain 1    score: 238.3 bits;  conditional E-value: 1.1e-73
   TIGR03250   8 iaGekvsrdavievrepydgevvgtvpkasvedvrralevaaayrskltryerskileraaellaarkeeisdlitlesGlskkdslyevgrvadvlklaaaevlrddgqifscdltp..hgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiGkli..aakagykravlelGGndplivledadldraadlavkGsyknsGqrctavkrilvqesvadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarlll......gnkrdGalyaptvldrvdpelalvreetfGpvspvirfkdi.ddairisnstayglssgvctnrldaitkliaelevGtvnvw 429
                 ++G  ++ d+ +  ++p +ge+++ v  ++ e+  + + +a++ +    r  r+k le+ ++ll++  +e++ +  +   l  ++    +g + + +++a+ ++     + f   l +  +    k   +r+p  gv++ ++p+n pl +++    p++a+ n vv+kpse vp +  l++ +l++  lp+ ++q+  G+   ++++l++++ +dlv++tG+ a Gk+i  aa  + kr++le+GG dp+iv +dadl++aa+ av  s  n+Gq c +v ri v +s+ d+f el    ++ +k+G+ +d  + +G ++ +    +++++ve+a  +Ga+ll       g++ +G+ y+ tvl  vd++++l  +etfGpv+ + +f++  ++a+r++n t+ygl s+v t++ ++ ++++a ++ G v + 
  MMETSP1061-20121228|4737_1 102 VQGVLIDDDNCLVNTNPATGEIISRVRCTTSEQLEEIIGTAKTSQ----REWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMGKPIGEAKEEVEFAVGDL----DEYFRILLESlkDKTYGKSTVVRHPY-GVVAIMSPWNFPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQK-VLPPGVIQLAQGSG-SVGAALVAHPEIDLVAMTGSSATGKKIleAAAPQLKRVILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDEFQELARVAAKDYKVGNGMDADNLVGPMVSNMQKDQVHAQVEDALSKGAKLLHrsetpqGENEKGSFYPVTVLADVDENMELFTKETFGPVVAIAKFDGTeEEAVRLANDTEYGLGSSVYTKDSEKANRIAALIDAGQVGIN 523
                 6899999*************************9999999987654....5566777777777777777777777777777777777777777777777777654....33343333221022334556779996.79999*******************************************986.6*********9986.79*************************44445579**********************************************************************************************************633333367789*********************************9872579*********************************99876 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.8   0.5   2.8e-69   7.6e-67      19     434 ..     114     524 ..      99     530 .. 0.90

  Alignments for each domain:
  == domain 1    score: 223.8 bits;  conditional E-value: 2.8e-69
   TIGR01722  19 pvsnpatnevlakvaeasaeevdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGktledakGdvarGlevvehacsvtslllGetvesvakdvdvysirqplGvvaGitpfnfpa.miplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhGdkeavdrllehpdvkavsfvGsvavgeyiyetgsahgkrvqalaGaknhmvvlpdadkeaaldalvgaavGaaGqrcmaisaavlvGaa.kelveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgykveG.yeeGnfvGitllervkpdmkiykeeifGpvlvvlead.tleeaiklinespyGnGtaiftsdGaaarkfqheievGqvGvnv 434
                   +npat+e++++v +++ e++++ + +a+ +   w++ s+ er  +l    + l +  d + +li+ e Gk + +ak +v   +  ++    +  ll     +   k      +r+p Gvva ++p+nfp   i l  +p ++a Gnt v+kpse vp +   + ++l++  +p Gv+++  G       l+ hp++  v++ Gs+a g+ i e ++ + krv   +G k+ m+v  dad+e+a++++v  ++  +Gq c ++  + +  ++ +e+ e  r +a+  +vg g d+   +Gp++++ +k++v   ++++  +Ga++l   r+ + +G  e+G f  +t+l++v  +m+ + +e fGpv+++++ d t eea++l n++ yG G++++t+d   a +    i++GqvG+n 
  MMETSP1061-20121228|4737_1 114 VNTNPATGEIISRVRCTTSEQLEEIIGTAKTSQREWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMGKPIGEAKEEVEFAVGDLDEYFRI--LLESLKDKTYGK---STVVRHPYGVVAIMSPWNFPLgEIMLLALP-SLASGNTVVVKPSEVVPETGALMVRILQK-VLPPGVIQLAQGSGSVGAALVAHPEIDLVAMTGSSATGKKILEAAAPQLKRVILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIyDEFQELARVAAKDYKVGNGMDADNLVGPMVSNMQKDQVHAQVEDALSKGAKLLH--RSETPQGeNEKGSFYPVTVLADVDENMELFTKETFGPVVAIAKFDgTEEEAVRLANDTEYGLGSSVYTKDSEKANRIAALIDAGQVGINC 524
                 458******************************************************************************8776655555444..333222222222...34689***************6257777777.79***********************9987.5999****************************************************************************************99887777767887777889999**************************************986..55556662578*********************************945678**************************************95 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  210.0   0.0   4.5e-65   1.2e-62      14     428 ..     112     523 ..     102     535 .. 0.87

  Alignments for each domain:
  == domain 1    score: 210.0 bits;  conditional E-value: 4.5e-65
   TIGR03240  14 slesldpvtqevlwqgkaasaaqvekavkaarkafpawarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikayeertGekeseladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGaretGkalaaeedidGllftGssntGallhrqlagrpekilalelGGnnplvveevkdidaavhlivqsafisaGqrctcarrllvkdgaeGdallerlveva.erltvgkydaepqpflGavisekaakellaaqekllalggksllelkqlee..eaalltp.gii.dvtevaevpdeeyfgpllkvlrykdf.dealaeanntrfGlaaGllsddrelydkflleiraGivnwn 428
                  l +++p+t+e + + + ++++q+e+ + +a+++  +w + sleer++++k+  + l+   +++ e+i +e gkp+ ea+ ev+  v+ ++   + + e    + ++ + +k+ +  +p+Gv+a++ p+nfp        +p+l +Gntvv kpse+ p ++  +v++++k  lp Gv++l qG+ + G al+a+++id + +tGss+tG+++ +  a + +++  le+GG +p++v + +d++ a++++v  ++  +Gq c    r+ v d+   + + ++l  va +  +vg+   +++ ++G+++s+  ++++ a  e++l +g+k l + ++ +   e++ + p +++ dv e  e+  +e fgp++ + +++   +ea++ an+t++Gl + + ++d+e+ +++   i aG v  n
  MMETSP1061-20121228|4737_1 112 CLVNTNPATGEIISRVRCTTSEQLEEIIGTAKTSQREWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMGKPIGEAKEEVEFAVGDLDEYFRILLE----SLKDKTYGKSTVVRHPYGVVAIMSPWNFPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQKV-LPPGVIQLAQGSGSVGAALVAHPEIDLVAMTGSSATGKKILEAAAPQLKRV-ILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDE-F-QELARVAaKDYKVGN-GMDADNLVGPMVSNMQKDQVHAQVEDALSKGAKLLHRSETPQGenEKGSFYPvTVLaDVDENMELFTKETFGPVVAIAKFDGTeEEAVRLANDTEYGLGSSVYTKDSEKANRIAALIDAGQVGIN 523
                 57789***********************************************************************************99866665554....334444455544445**************666667789****************************986.9*****************************************999998876.59*******************************************9887654.4.555555514555555.6677889********999988888888899988887776654322444444414434999999*****************976268*********************************999776 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.2   0.4   1.1e-56     3e-54      39     462 ..      99     524 ..      56     534 .. 0.86

  Alignments for each domain:
  == domain 1    score: 182.2 bits;  conditional E-value: 1.1e-56
   TIGR01238  39 apivgekakaegeaqpvknpadrkdivGqvseadaaevqeavdsavaafaewsatdakeraailerladlleshmpelvallvreaGktlsnaiaevreavdflryyakqvedvldeesaka.......lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvadrvltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkakakkvaqvkleddvesekgtfvaptlf.eldd.ldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvnr 462
                  ++v++   ++++    +npa   +i+ +v+ +  ++ +e +++a ++  ew     +er   l+   + l     +++ l+v+e Gk + +a +ev  av  l  y +   ++l++++           G+v  +spwnfpl   +     +la+Gntv+ kp+e  +   a  v +lq+  +p+gviql  G G  vGaal +++ i  v++tGs+++ ++i +a a + +    +i e GG++ miv   a  e+  +d +  ++  +Gq c ++  ++v + + d+  +l + a ++ kvg+ +     vGp++ +  k+++ a +e   +k+ k+ +     + e ekg+f + t++ ++d+ ++ + ke fGpv+ + ++   e ++ v   n++ ygl   v+++  e  ++i   + +G v +n 
  MMETSP1061-20121228|4737_1  99 RNMVQGVLIDDDNCLVNTNPATG-EIISRVRCTTSEQLEEIIGTAKTSQREWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMGKPIGEAKEEVEFAVGDLDEYFRILLESLKDKTYGKstvvrhpYGVVAIMSPWNFPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQKV-LPPGVIQLAQGSGS-VGAALVAHPEIDLVAMTGSSATGKKILEAAAPQLKR---VILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDEFQELARVAAKDYKVGNGMDADNLVGPMVSNMQKDQVHAQVEDALSKGAKLLHRSETPQGENEKGSFYPVTVLaDVDEnMELFTKETFGPVVAIAKFDGTE-EEAVRLANDTEYGLGSSVYTKDSEKANRIAALIDAGQVGINC 524
                 45666666777777777888865.6899*************************************************************************66655555555666666543336666779*************9888888899**************************985.9************9.**************************9999988765...599***********************************999999*************************************************9876666666555555569999***998775537885166669**************998.5678999******************************99995 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7   0.0   1.3e-38   3.5e-36      42     460 ..     107     508 ..      87     526 .. 0.85

  Alignments for each domain:
  == domain 1    score: 122.7 bits;  conditional E-value: 1.3e-38
   TIGR01236  42 vksnelievvaPadhqaklakltnateedvkkaveaaldakkeWselpfadraaiflkaadllsgkyreeilaatmlgqsktvyqa..eid.avaelidffrfnvkyarelleqqPsvsapgelnkveyrpleGfvaaisPfnftaiaanlagaPalm.GnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadveevvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeel.eilaGGkyddskGyfvePtvveskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdreai 460
                 +++++ +  ++Pa   + ++++  +t+e++++ + +a+ +++eW ++ +++r  ++    + l++   + i   ++ + +k + +a  e++ av +l ++fr  +   ++l ++           ++  r   G va +sP+nf      l + P+l  Gn+vv kPs+++  +  l+++il++  lPpgvi++  + g  v+ + +a++++  + +tGs a+ k++ +  a +l+      r++ e GGkd ++v   ad+e+++   +  ++   Gq c ++ r+yv++s+++e++e     +k+ kvg+  d  + +g+++++ + +++   +e+a ++ ++l +     + ++ kG f   tv+   d + +l+++e fGPv+++  +d ++ +e +++  + ++y+l  +v++kd e  
  MMETSP1061-20121228|4737_1 107 IDDDNCLVNTNPAT-GEIISRVRCTTSEQLEEIIGTAKTSQREWRKKSLEERVDLLKECIKELAAISDAMI-ELIVQEMGKPIGEAkeEVEfAVGDLDEYFRILL---ESLKDK-------TYGKSTVVRHPYGVVAIMSPWNFPLGEIMLLALPSLAsGNTVVVKPSEVVPETGALMVRILQKV-LPPGVIQLAQGSG-SVGAALVAHPEIDLVAMTGSSATGKKILEAAAPQLK------RVILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDEFQELARVAAKDYKVGNGMDADNLVGPMVSNMQKDQVHAQVEDALSKGAKLlHRSETPQGENEKGSFYPVTVLADVDENMELFTKETFGPVVAIAKFDGTE-EEAVRLA-NDTEYGLGSSVYTKDSEKA 508
                 45555677788875.56799999*********************************999999998765544.445555666665551144434555555555433...333333.......333456677778***********999999******965***********************985.*********9996.6788999**********************9999886......89***********************************************************************************************9877654155667788999*****99***************************9987.5666665.5679**********98765 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.9   1.7e-33   4.7e-31     131     435 ..     213     514 ..     108     523 .. 0.84

  Alignments for each domain:
  == domain 1    score: 105.5 bits;  conditional E-value: 1.7e-33
   TIGR02278 131 kdgsfqgrhiltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqli..vGsvgdlldhldsrdvvaftGsaataeklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGplvsveqredveaavaallaagaevrlgdpeeld....GaffaPtlllaeepeadavhateafGPvatllayddr.aeavrlaarGeGslvaslvtadpevarqfilg 435
                 kd ++    ++    Gv   +  +nfP   ++    P++ +G  ++vkP+         +v++++  ++lP G +ql   +Gsvg  l +  + d va+tGs at++k+    + + k  r + e    ++ ++ +d+      +++ +k+ v    + +Gq c ++ r+ v  +  ++  e  +   ++ k+G+  + d  +Gp+vs  q+++v+a+v+  l++ga++  + +        G+f++ t+l  +  e   +   e+fGPv+++  +d + +eavrla   e  l +s+ t+d e a+ +++ 
  MMETSP1061-20121228|4737_1 213 KDKTYGKSTVVRHPYGVVAIMSPWNFPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQ--KVLPPGVIQLAqgSGSVGAALVAHPEIDLVAMTGSSATGKKILEAAAPQLK--RVILEMGGKDPMIVCDDAD-----LEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDEFQELARVAAKDYKVGNGMDADNLVGPMVSNMQKDQVHAQVEDALSKGAKLLHRSETPQGenekGSFYPVTVLA-DVDENMELFTKETFGPVVAIAKFDGTeEEAVRLANDTEYGLGSSVYTKDSEKANRIAAL 514
                 56666666666677789888999*****99988888******************99999999986..79********9445789*9999999***************98766655554..5566777778888887776.....9999999999999**********************9999888889****************************************99865322223459999888775.555778899*************9875268************************987654 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.059        16      85     135 ..     134     184 ..     127     188 .. 0.87
   2 !   72.7   0.3   1.4e-23   3.8e-21     205     493 ..     238     515 ..     218     525 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.059
   TIGR02288  85 dtdalleaakkalkgwrdaGararvgvcleilqrlnkrslelahavmhttG 135
                 + ++++ +ak ++++wr+   + rv    e ++ l++ s ++ + +++  G
  MMETSP1061-20121228|4737_1 134 QLEEIIGTAKTSQREWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMG 184
                 56889999******************************9999887766555 PP

  == domain 2    score: 72.7 bits;  conditional E-value: 1.4e-23
   TIGR02288 205 fptwntypGlfaslatGnavlvkphpgailplaltvkvarevlaeaGfdpnlvalaaeeaeeevaqrlaldpavrivdftGsnafGe.wleqnarqa.qvytekaGvntviiestddl.kavlrnlafslslysGqmctttqailvprdGirtdegrksydevaadlaaaidkllgddaravallGaiqsedtvariaearalGevlldskklehpefpdarvrtplllkvdaa.deaayaeerfGpiafvvavddaa.havelarrvvrekGaltlgvyttdeevveaveela 493
                 fp  +     + sla+Gn+v+vkp +      al v++ ++vl      p +++la  +   +v  +l  +p++ +v  tGs+a G+  le+ a q  +v  e  G + +i+    dl ka    + +sls  +Gq+c + + i+v +d i    + +   +vaa+  +  +++ +d+ +   ++  +q++++ a++++a ++G  ll   +  + e ++     p+ + +d   + + +++e+fGp+  + + d ++ +av+la+++  e   l  +vyt d+e ++++  l 
  MMETSP1061-20121228|4737_1 238 FPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQKVL-----PPGVIQLAQGS--GSVGAALVAHPEIDLVAMTGSSATGKkILEAAAPQLkRVILEMGGKDPMIVCDDADLeKAAKDAVMYSLS-NTGQVCCSVERIYV-ADSIYD--EFQELARVAAKDYKVGNGMDADNLVGP-MVSNMQKDQVHAQVEDALSKGAKLLHRSETPQGENEKGSF-YPVTVLADVDeNMELFTKETFGPVVAIAKFDGTEeEAVRLANDT--EY-GLGSSVYTKDSEKANRIAALI 515
                 5555554445679**********998777778**********8.....5999*999776..778999*******************735788888852799******998875555551666667888998.68***********9.588864..455667999999999999999998765.66899****************7766666666666555544.455555555426689*********99999998752799999985..44.477899**9999999887665 PP

>> TIGR02518  EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.7   1.7e-06   0.00047      90     262 ..     212     382 ..     133     392 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.7e-06
   TIGR02518  90 leedkekkvievavpvGvvaglvpstnptstaiyktlisikarnaivlsphpaakkciietvklirkaaekaGapegiiasltvptiegtnelmknkdtslilatGGeamvk....aayssGkpaiGvGpGngpayieksanvkkavkkildsktfdnGticaseqsvvvekvnkda 262
                 l++++  k + v  p Gvva + p   p   ++  +l s+ ++n++v+ p     ++    v++++k       p g+i   +  +      l+ + ++ l+  tG +a  k    aa    k  i    G  p  +   a+++ka k+ +     + G +c s   + v +   d+
  MMETSP1061-20121228|4737_1 212 LKDKTYGKSTVVRHPYGVVAIMSPWNFPLGEIMLLALPSLASGNTVVVKPSEVVPETGALMVRILQKV-----LPPGVIQLAQ-GSGSVGAALVAHPEIDLVAMTGSSATGKkileAAAPQLKRVILEMGGKDPMIVCDDADLEKAAKDAVMYSLSNTGQVCCSVERIYVADSIYDE 382
                 5666677888999************************************9876666666666666554.....6889997655.455556789************98776551111555555566777789******************999999999****999888877665554 PP

>> TIGR03938  deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   3.8e-05      0.01     394     511 ..      83     197 ..      49     206 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.8e-05
   TIGR03938 394 pfdpearkvikdiYedLaksakfdGiLFhddavlsdfedaskealaaykkaglpesieeir.edpellkkwtklktkalidftlelaaavrairrpklktarnlyaqpvlepeseawfa 511
                 p+++++r   ++ ++ +a+  +++G+L +dd +l +++ a+ e ++   +   +e++eei  + ++ +++w k   ++ +d+ +e  +++ ai++  ++ + + +++p+ e + e +fa
  MMETSP1061-20121228|4737_1  83 PIQASKR---RHNFNRIARRNMVQGVLIDDDNCLVNTNPATGEIISRV-RCTTSEQLEEIIgTAKTSQREWRKKSLEERVDLLKECIKELAAISDAMIELIVQEMGKPIGEAKEEVEFA 197
                 3333333...2346789**************************99999.5566677777651556667789999999999999999999999988888888888888887777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.57u 0.16s 00:00:00.73 Elapsed: 00:00:00.64
# Mc/sec: 1105.41
//
Query:       MMETSP1061-20121228|4740_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.23
# Mc/sec: 2628.30
//
Query:       MMETSP1061-20121228|4741_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-20   69.5   0.0    1.4e-17   62.0   0.0    3.2  1  TIGR00071 hisT_truA: tRNA pseudouridine synthase A


Domain annotation for each model (and alignments):
>> TIGR00071  hisT_truA: tRNA pseudouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   3.4e-21   1.4e-17      20     211 ..      49     334 ..      45     348 .. 0.80

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 3.4e-21
   TIGR00071  20 qpekktvegelekaLeevgakkkkf.vmsagRTDkGVhAlgqvislkikkeied.....................................kklvaklnallpedirvka........lekVn...........kkFdaRfsassrkYryiln.nkk............yr.saldlekleaaakellGkhdFsnFtkakdskeks......airtikkikvse.......................seeliilkiiGssFllhqvRkivaalvlvgreklpveevsklleq 211
                 +p+ +t++gele  L++     + + v++agRTD GVhA gq i++++  + +                                      ++l   ln  lped+  ++        +   +            +++a +  +s+ Y+y +    +               +++d  +le+  k + G+hdF  F  a ++++k+      ++rti+ i++ +                         +++ ++i+ ++ l+++vR+iv+++v+v re +  e++++lle 
  MMETSP1061-20121228|4741_1  49 KPPPRTIQGELERVLSKRFR--RVVkVVGAGRTDGGVHARGQAIHFDLYPNETLvergtqesspndnndsndsndsnendnkndkgqtifeRELEHTLNRMLPEDMCAWNlgrtvptvV---EgnaggtippgiYNWNAMRTSTSKLYSYRISvG-DamdpserhhrwqLPwHSIDPRRLERVLKSFEGTHDFVCFAGALEQNQKKtgvtmgTVRTIHRIELVResdagkrradhrntentswgrdlLDDCYRIDIYLDGALYKMVRNIVGTAVDVCREWIDEEWLEDLLER 334
                 6899*************999..55567*********************99888888999999999999999999999999999999999988888889999999999998433222210...111122222222466666666666777777743.347888888888733489**********************976654444312222267888888887799**************9999998899**************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1471.88
//
Query:       MMETSP1061-20121228|4742_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 597.09
//
Query:       MMETSP1061-20121228|4744_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1062.20
//
Query:       MMETSP1061-20121228|4748_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1203.74
//
Query:       MMETSP1061-20121228|4746_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-35  119.3   0.0    1.2e-18   65.1   0.0    3.4  3  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
    9.4e-22   75.5   0.0    1.7e-13   48.3   0.0    2.8  3  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B
  ------ inclusion threshold ------
      0.017   13.3   0.0      0.033   12.3   0.0    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   3.6e-14   4.9e-11      51     122 ..     336     419 ..     327     422 .. 0.84
   2 !   65.1   0.0   8.8e-22   1.2e-18     126     222 ..     464     563 ..     455     578 .. 0.87
   3 !    9.7   0.0   7.2e-05     0.099     242     264 .]     675     697 ..     660     697 .. 0.88

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 3.6e-14
   TIGR00446  51 GlyllqeassmlPvlalepe...........ekervlDlaaaPGgkttqisallkne.GaivanevsksRvkvLianinRlGvl 122
                 G +  qe  smlPv  l++            + +rvlD++a+PG+kt q s+++    G + an+v+++R+++L++ ++R Gv 
  MMETSP1061-20121228|4746_1 336 GTIARQELGSMLPVWLLDAIgafeggrrrrrPTMRVLDVCASPGSKTLQASEMVAPGgGRVRANDVNANRLESLREAVQRSGVF 419
                 788899999999999998744444455556699*******************9986516799********************95 PP

  == domain 2    score: 65.1 bits;  conditional E-value: 8.8e-22
   TIGR00446 126 vinvDgRkfgavvlk...fDriLlDaPCsgeGvirkdksrkknrseedikeisklqkeLllaaidalkkgGvlvYstCsleveeneevvdyllrkrkdvv 222
                   nvD+ k++  + +   +  iL D PCsg+G  rkd +++ n+++     + +lq ++l+ a+ ++ k+G++ YstCsl+++e+e+vv  +l ++k++ 
  MMETSP1061-20121228|4746_1 464 YSNVDASKYPIPRSEskkYPIILCDVPCSGDGTCRKDVHVIPNWTPSISNALHSLQVKILVRAMRCVSKNGIVSYSTCSLNPIEDEAVVLAALDQQKQED 563
                 467888888765554345888********************************************************************99998877654 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 7.2e-05
   TIGR00446 242 kkalrvyPqsedveGFFvaklrk 264
                  ++lr+ Pq +d+ GFFva lr+
  MMETSP1061-20121228|4746_1 675 DRCLRLCPQDQDTGGFFVALLRR 697
                 689****************9985 PP

>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     5e-09   6.9e-06     248     295 ..     370     418 ..     364     435 .. 0.90
   2 !   48.3   0.0   1.2e-16   1.7e-13     292     401 ..     457     568 ..     447     582 .. 0.78
   3 ?   -0.7   0.0      0.09   1.2e+02     412     435 ..     674     697 ..     654     698 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 5e-09
   TIGR00563 248 tilDvCaaPGGktthilel.akdqaqvvalDleehrlkrvkenleRLgl 295
                  +lDvCa PG kt    e+ a+  ++v a D++  rl+ ++e+ +R g+
  MMETSP1061-20121228|4746_1 370 RVLDVCASPGSKTLQASEMvAPGGGRVRANDVNANRLESLREAVQRSGV 418
                 79***************96267899*********************875 PP

  == domain 2    score: 48.3 bits;  conditional E-value: 1.2e-16
   TIGR00563 292 RLgltiikveekdadk.agekeevekfDRiLlDaPCsalGvirRkPDlkwlrkeadiaeLvelqkeiLkaiaplvkkgGtLvYstCtllpeeneeqikaF.lael.edlplek 401
                 R++   ik  ++da+k + +++e +k+  iL D+PCs+ G+ r++  +    +++ +  L  lq +iL   +  v k+G++ YstC+l+p e+e+++ a  ++++ ed  le 
  MMETSP1061-20121228|4746_1 457 RMNSA-IKYSNVDASKyPIPRSESKKYPIILCDVPCSGDGTCRKDVHVIPNWTPSISNALHSLQVKILVRAMRCVSKNGIVSYSTCSLNPIEDEAVVLAAlDQQKqEDAGLEF 568
                 44443.5555555544245667999**********************99999******************************************9987654444424443333 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.09
   TIGR00563 412 ssgglqilPhaeegDGFfiaklkk 435
                  +  l++ P+ +++ GFf+a l++
  MMETSP1061-20121228|4746_1 674 LDRCLRLCPQDQDTGGFFVALLRR 697
                 56678899************9875 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   2.4e-05     0.033      18      68 ..     366     418 ..     363     443 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.4e-05
   TIGR02469  18 kkgdvllDiGaGtGsvtieaarlvpk..grvyaierneealelieeNlrrfgv 68 
                 ++++++lD+ a  Gs t+ a+++v    grv a + n+++le+++e ++r gv
  MMETSP1061-20121228|4746_1 366 RPTMRVLDVCASPGSKTLQASEMVAPggGRVRANDVNANRLESLREAVQRSGV 418
                 6789******************9876689*****************9999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 2636.01
//
Query:       MMETSP1061-20121228|4754_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.43
# Mc/sec: 187.24
//
Query:       MMETSP1061-20121228|4751_1  [L=802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.50
# Mc/sec: 2117.11
//
Query:       MMETSP1061-20121228|4758_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 641.09
//
Query:       MMETSP1061-20121228|4752_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.15s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 1931.35
//
Query:       MMETSP1061-20121228|4759_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 1793.50
//
Query:       MMETSP1061-20121228|4762_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.18
# Mc/sec: 1319.89
//
Query:       MMETSP1061-20121228|4763_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 1352.89
//
Query:       MMETSP1061-20121228|4764_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.1    4.5  10.7        2.3    4.4   7.5    1.0  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   7.5   0.00055       2.3      59     104 ..       2      47 ..       1      50 [. 0.76

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.00055
   TIGR03490  59 sensnnksnseekdeeepkskkpekkpdpsknkeeiekpkkepkkp 104
                 ++n+nn++n ++ +ee+p  k++++k +p+  ++++   ++e++++
  MMETSP1061-20121228|4764_1   2 NNNNNNNNNDNDGEEEKPLGKNTSEKREPAVVDDDDYGRDDEKDQT 47 
                 45555555777778899*9**********98888887777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|4765_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.46
# Mc/sec: 1747.42
//
Query:       MMETSP1061-20121228|4768_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   11.8   0.0      0.035   11.3   0.0    1.2  1  TIGR01136 cysKM: cysteine synthases


Domain annotation for each model (and alignments):
>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.4e-06     0.035      37      56 ..       1      20 [.       1      26 [. 0.90

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.4e-06
   TIGR01136 37 KdRialsmildAekrgllkk 56
                KdR+al+mi  Aek+g+l +
  MMETSP1061-20121228|4768_1  1 KDRAALNMIRMAEKEGTLPP 20
                9***************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 467.96
//
Query:       MMETSP1061-20121228|4772_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 725.94
//
Query:       MMETSP1061-20121228|4771_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.37
# Mc/sec: 246.14
//
Query:       MMETSP1061-20121228|4778_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1061-20121228|4769_1  [L=794]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.0   0.0      0.028   11.0   0.0    1.8  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.4   6.2         1   4.1e+03     356     368 ..     104     116 ..      43     191 .. 0.40
   2 ?   11.0   0.0   6.7e-06     0.028     205     255 ..     710     755 ..     704     779 .. 0.83

  Alignments for each domain:
  == domain 1    score: -10.4 bits;  conditional E-value: 1
   TIGR01645 356 alpqaapavlkde 368
                  lp  +p v +  
  MMETSP1061-20121228|4769_1 104 VLPVPVPTVTTSS 116
                 2222222222222 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 6.7e-06
   TIGR01645 205 vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsq 255
                 ++ + +  +e+d++  f afG+i       a+ + khkG+G++ f    + 
  MMETSP1061-20121228|4769_1 710 ISGMRRSTTEDDIRYTFSAFGDIS-----VAAVAPKHKGYGIMRFSSDMAV 755
                 566777889**************9.....3455679*****9999876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:01.02
# Mc/sec: 1027.44
//
Query:       MMETSP1061-20121228|4780_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.37
# Mc/sec: 463.75
//
Query:       MMETSP1061-20121228|4781_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-83  279.0   9.9      2e-83  278.5   6.8    1.1  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    1.9e-19   67.8   8.0    2.7e-19   67.3   5.6    1.1  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    4.3e-10   36.6   4.4    1.3e-09   35.0   1.3    2.1  2  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    1.5e-07   28.4   5.3    3.2e-07   27.3   3.7    1.6  1  TIGR00898 2A0119: cation transport protein
    1.6e-05   21.8   2.0    1.6e-05   21.8   1.4    1.5  2  TIGR00887 2A0109: phosphate:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.5   6.8   2.5e-86     2e-83       1     380 [.     129     521 ..     129     532 .. 0.93

  Alignments for each domain:
  == domain 1    score: 278.5 bits;  conditional E-value: 2.5e-86
   TIGR00883   1 GnavewfDfllYafaAvlvfeefFfpssdplvallatlatfavgFlaRplGaivfGalgDr.lGRkktLvvtlllMgigtvligllPsyatiGiwApilLlllrliQGlslGgEyggaalllaEsApegkrglygsfqqvgasvglllaalvvlllsallseealleWgWRiPFlvsvvlvligLylRlkleEtpvfekekekkkkear..........kkriplaevltk..krkelllvlglviatsvlfYllttylasYlkktaklglsaesallvlllalillllviplsgllsdriGrrkvlilltvlaallavpllsallesssillvlllllllalivamytgvmaallaelfpt..evRytgvslaynlasviggglapviaaaLva 380
                 Gn+ ew+Df++Y+++A  ++  fF+ +s++  +l+++++++ ++F++Rp+Ga++fG++gDr +GRk++Lv ++ll++i++vl+g+lP++   G+  pilL+llr++QGls+Gg ++g+ +l+ E++  ++rg+ gs+ ++++  g+lla+lv++++ + ++++++ +W+WR+PFl+s++l+ i   + ++ eE++  ++++e+k+ e++           +r +++ ++++  +r++l  ++gl  at+++fY+l  + + Yl++  +  +++++a  ++  ++ + ++++ lsg  sdr+  r+ l+++++  +++a+p+++ + e++s++ ++l ++lla+ +a+++g maal +el  +   + +tgv+++ n a+ ++gg+ p++a+ L  
  MMETSP1061-20121228|4781_1 129 GNIYEWYDFAVYGLLASEIGACFFP-QSSKELQLVNSFGVYLAAFVMRPIGAVLFGEIGDRmVGRKHALVFSILLITIPSVLMGILPGFGMLGWTSPILLVLLRMLQGLSVGGQLAGSYVLSIEQSSVRNRGFRGSVCDASSVGGFLLASLVTTCVRFSFTQDQVDAWAWRLPFLFSLLLAPILYHIVNQTEESKFWAERNEQKEVEDQvreaeaefegDSRPAIMDLMASpfRRRQLAGMIGLLSATTSTFYVLFLFCPVYLSELKG-IMTQAHADSMNFGVVGVYIVLLLLSGQASDRFQHRRDLMCIGLPGLIVACPVMFSMFETGSLWGIFLGQILLAACLALVNGGMAALEVELWMAdpTLSFTGVAVGHNTAATLFGGTMPLVATGLYY 521
                 899*****************99999.8899*******************************55************************************************************************************************************************************999998888877767788888887666677777777224567888999***********************88.888999999999999999999********************************************************************9865226899***********************9965 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   5.6   3.3e-22   2.7e-19      54     330 ..     169     457 ..     129     500 .. 0.73

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 3.3e-22
   TIGR00891  54 saalivrsvGalllGlwaDr.vgrrlplvtsvvlfsvatllcafapty........ekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyav.Gfvlaavvysvvv.nvlgd.....sWriLfflsilpiilalflrkrvpeaevwkeklkakklvktrvdkv...lggealvkaivktkavamkrsvqkrwllfvyLvvllvaanylshaiqdllPtyLkadlglskdtvavivvvsniGa.ivGglvfGtlsevlgrrkalvialllgqllivPvfals.aekav 330
                  aa+++r++Ga+l+G ++Dr vgr+ +lv s+ l ++ ++l +  p++        + l+ +r++ G+++gG+   +  l+ie+  ++ r++  G + ++ +v Gf+la++v + v   + +d     +Wr+ f +s+l++ ++  +  + +e++ w e +++k  v  +v+++   + g+++++  ++ ++++  r  q      + L+   + ++y+ +      P yL    g+ +++ a  + +  +G  iv  l+ G+ s+++  r+ l++  l g ++  Pv      +  +
  MMETSP1061-20121228|4781_1 169 LAAFVMRPIGAVLFGEIGDRmVGRKHALVFSILLITIPSVLMGILPGFgmlgwtspILLVLLRMLQGLSVGGQLAGSYVLSIEQSSVRNRGFR-GSVCDASSVgGFLLASLVTTCVRfSFTQDqvdawAWRLPFLFSLLLAPILYHIVNQTEESKFWAERNEQK-EVEDQVREAeaeFEGDSRPA--IMDLMASPFRRRQLA--GMIGLLSATTSTFYVLF---LFCPVYLSELKGIMTQAHADSMNFGVVGVyIVLLLLSGQASDRFQHRRDLMCIGLPGLIVACPVMFSMfETGSL 457
                 479****************9569***********************9944444444457999****************************976.666777777369****9998875233332233337999*************************9987665.56777766611145666666..999999877654443..22333334444444444...5678889888899999998888888888736667889***********99999999988888875433133333 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   1.3   1.5e-12   1.3e-09       6     391 ..      66     445 ..      60     452 .. 0.75
   2 !    5.7   1.0    0.0012         1     115     169 ..     416     471 ..     368     477 .. 0.77

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 1.5e-12
   TIGR00879   6 sseseagsaldedeeeqsanels...amedanledasellltpallgsnyvfvallsllaalagllfgYdtavisaalallkfefkftsnlsd.asssqwglvvsillvGgligalfagylsd.rfgrkkslliiallfvigailsllaatals.....vevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifgsgklvanntlgwriplglqlipalllllglfflPesprwLvekgkeeeArkslarlrgeksedkelleelelikikreiekesvnksgaelfslkkr.iirrlllgvvlqafqQltGiNaimyYsptifenl.Gvst.dtallvsiivgavnvaaTfvaiflvdrfG.RrtllliGaagmaicl 391
                 ss+s+++ +   d+    +n ++    m+ a+++  +e+l+      +  +    ++ll  ++g++  +    + + la+ + + +f+++ ++     + g+ +++++    iga++ g ++d + grk +l ++ ll+ i ++l+++             +l++ R+l G+ vG++ a + +   E +++  Rg  +s+   + + G l+a+++++   +  ++++ +     +++++l++l +l+++P     +   +++ee++   +r +++k+++++++e ++++      e      s   +++l  + ++rr l g++      ++   +++ + p+ +++l G+ t  +a  +++ v  v ++  +++  ++drf  Rr+l  iG+ g  +++
  MMETSP1061-20121228|4781_1  66 SSSSSRPRIEGMDQLGIDENHSDhyaNMTEAEKQMHEEELSFYSASDNDHGDDNIWGLLSGVGGNIYEWYDFAVYGLLASEIGACFFPQSSKElQLVNSFGVYLAAFV-MRPIGAVLFGEIGDrMVGRKHALVFSILLITIPSVLMGILPGFGMlgwtsPILLVLLRMLQGLSVGGQLAGSYVLSIEQSSVRNRGFRGSVCDASSVGGFLLASLVTTCVRFSFTQDQVD-----AWAWRLPFLFSLLLAP---ILYHIVNQTEESKFWAER-NEQKEVEDQVREAEAEF------E----GDSRPAIMDLMASpFRRRQLAGMIGLLSATTSTFYVLFLFCPVYLSELkGIMTqAHADSMNFGVVGVYIVLLLLSGQASDRFQhRRDLMCIGLPGLIVAC 445
                 44444444444444333333333444888888888888899999999999999****************99999**************77555433334455555555.456777777777761679*******************98887655677666678999***********99999999999****************************4444445666666.....8999999999998887...444555566665555555.66666666666633333......3....3445666666666578888999988889999999999*****999998798887888999999999999999999*******647889999955554444 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0012
   TIGR00879 115 galfagylsdrfgrkkslliiallfvigailsllaatals.vevlivgRvllGigv 169
                   l++g  sdrf  ++ l++i+l  +i a+  +++ + ++ ++ +++g++ll+ ++
  MMETSP1061-20121228|4781_1 416 LLLLSGQASDRFQHRRDLMCIGLPGLIVACPVMFSMFETGsLWGIFLGQILLAACL 471
                 457899****************96655555554555555558*********98665 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   3.7   3.9e-10   3.2e-07     141     238 ..     177     283 ..     170     384 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 3.9e-10
   TIGR00898 141 lGslvlGqlsDr.fGRkkvLllstlvtavsgvltafspnytv........flvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYli 238
                 +G++++G++ Dr  GRk++L++s+l  ++ +vl+ + p + +        +++lr+L+G++ +g    ++vL++E  ++  R   g +       G+ll +l+   +
  MMETSP1061-20121228|4781_1 177 IGAVLFGEIGDRmVGRKHALVFSILLITIPSVLMGILPGFGMlgwtspilLVLLRMLQGLSVGGQLAGSYVLSIEQSSVRNRGFRGSVCDASSVGGFLLASLVTTCV 283
                 79**********99********************99999965333333326899****************************9999987777777777777776555 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   1.4   1.9e-08   1.6e-05      21     180 ..     125     289 ..     118     296 .. 0.84
   2 ?   -4.1   0.0       1.4   1.2e+03     250     292 ..     327     370 ..     315     382 .. 0.57

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.9e-08
   TIGR00887  21 aGvG.FftDsYDlFaislvtkllgyvYyetk.gklpssvsalvkasasvgtllgqllfglladll.grkrvygleliivivatvasalsak..ssalsvvatllfyrlllgvGiggdyplsaiitsefatkkrRGaliaavFamqgfGilagaivalivlaafkk 180
                  GvG  + + YD  +  l++  +g  ++ ++  +l+   s  v  +a+v + +g +lfg ++d++ grk+     ++++ + +v++++ ++      +   +l+  r+l g+ +gg+   s ++  e +  + RG   +   a    G l +++v+  v  +f +
  MMETSP1061-20121228|4781_1 125 SGVGgNIYEWYDFAVYGLLASEIGACFFPQSsKELQLVNSFGVYLAAFVMRPIGAVLFGEIGDRMvGRKHALVFSILLITIPSVLMGILPGfgMLGWTSPILLVLLRMLQGLSVGGQLAGSYVLSIEQSSVRNRGFRGSVCDASSVGGFLLASLVTTCVRFSFTQ 289
                 56642567889999999***********9773444444455799*******************7549*********************998334455566788999*************9999999*********877777788888999******999999976 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 1.4
   TIGR00887 250 qkkaeaeedevekaskeve.vpkasssdfvtkfskrkhgklLlG 292
                 ++++++ ed+v++a++e e   +   +d++   ++r++   ++G
  MMETSP1061-20121228|4781_1 327 RNEQKEVEDQVREAEAEFEgDSRPAIMDLMASPFRRRQLAGMIG 370
                 33344445556666666665446677788777777776655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.53
# Mc/sec: 1541.53
//
Query:       MMETSP1061-20121228|4774_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.14s 00:00:00.72 Elapsed: 00:00:00.72
# Mc/sec: 1087.08
//
Query:       MMETSP1061-20121228|4782_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 798.53
//
Query:       MMETSP1061-20121228|4775_1  [L=840]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       398  (0.0970258); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.42
# Mc/sec: 2639.78
//
Query:       MMETSP1061-20121228|4783_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 735.37
//
Query:       MMETSP1061-20121228|4787_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 855.80
//
Query:       MMETSP1061-20121228|4785_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-08   29.1   0.0    1.2e-06   25.5   0.0    2.2  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    0.00055   17.4   0.0      0.031   11.7   0.0    2.2  2  TIGR01777 yfcH: TIGR01777 family protein
  ------ inclusion threshold ------
       0.02   12.7   1.1      0.041   11.7   0.7    1.5  1  TIGR01915 npdG: NADPH-dependent F420 reductase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   8.9e-10   1.2e-06       5     119 ..      11     124 ..       7     147 .. 0.75
   2 ?    1.0   0.0     0.025        34     198     259 ..     200     262 ..     197     282 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 8.9e-10
   TIGR03466   5 vtGatGFvGsavvrllleeGe...evrvlvrktsd..rrnleeldvEiveGdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvytssvatlgv 119
                 v GatGF G avv++ ++ G    e+r+++r+  +  ++ le+   Eiv+ d +de+s+ ka +Gc+  f +    ++w +     +++ ++  r+  eaA++agv++vv +  + t + 
  MMETSP1061-20121228|4785_1  11 VMGATGFQGGAVVQAFANLGSdkfEIRAITRDPEKdsAKALEGKVREIVKADGDDEESMIKAFEGCHGAFIMS---NFWEACD---VRHEMKTLRTCKEAAKKAGVKHVVLSGLEDTRAA 124
                 89************99998853338******865511567888889********************9998765...5776544...5677888899999999999999998765555443 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.025
   TIGR03466 198 dtgLnlvdvddvaegHllAler.GriGerYiLGgenltlkqlleklaeitglkapklklpkal 259
                 d  L +v+v+d+ +  ++ +++   iG    + + n+t k++ +  +++ g++     +p ++
  MMETSP1061-20121228|4785_1 200 DKKLSMVKVEDIGKCACAIFQDeSLIGKTIGVSSANMTCKDIAAVFSKVCGQEVVYNDVPVEV 262
                 567999********99999876367888888999***************99998887777665 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   2.3e-05     0.031       1      50 [.       9      61 ..       9      95 .. 0.70
   2 !    3.7   0.0    0.0062       8.4     188     250 ..     196     259 ..     189     266 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.3e-05
   TIGR01777  1 vlitGgtGliGralveelek...kghevviltrskekekeekkesakevaeea 50
                +++ G+tG+ G a+v+++ +   ++ e++++tr++ek ++++ e + +++ +a
  MMETSP1061-20121228|4785_1  9 IAVMGATGFQGGAVVQAFANlgsDKFEIRAITRDPEKDSAKALEGKVREIVKA 61
                6899***********987651116669*********88887766554444433 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0062
   TIGR01777 188 lGsGrqwlsWihleDlvklilfaleneevsGvvNataPepvrnkefakalakalhrpallp.vP 250
                 +  G++ ls + +eD+ k    ++++e++ G    ++   ++ k++a  ++k+ ++ ++ + vP
  MMETSP1061-20121228|4785_1 196 FPMGDKKLSMVKVEDIGKCACAIFQDESLIGKTIGVSSANMTCKDIAAVFSKVCGQEVVYNdVP 259
                 5568999*********************************************999877665466 PP

>> TIGR01915  npdG: NADPH-dependent F420 reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.7     3e-05     0.041       3      91 ..       9     104 ..       7     128 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3e-05
   TIGR01915   3 iavlGGtGdqGkGlalRlAkag...eeiiiGsRdkekAeeaA..kkaleeleekG.d.eikveGleneeaAkradvvilavpldavlktleslkee 91 
                 iav+G tG qG  ++  +A  g    ei    Rd+ek + +A   k++e+++ +G d e  ++ +e  + A        a  + +++ktl+  ke 
  MMETSP1061-20121228|4785_1   9 IAVMGATGFQGGAVVQAFANLGsdkFEIRAITRDPEKDSAKAleGKVREIVKADGdDeESMIKAFEGCHGAFIMSNFWEACDVRHEMKTLRTCKEA 104
                 9******************9886556787889**9997777633699********53455677777666666655556666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1522.59
//
Query:       MMETSP1061-20121228|4788_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-29   98.7   0.0    1.3e-28   97.9   0.0    1.4  1  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type
    3.7e-25   86.1   0.0    6.5e-25   85.3   0.0    1.3  1  TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type


Domain annotation for each model (and alignments):
>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   6.2e-32   1.3e-28      35     205 ..     333     504 ..     315     507 .. 0.96

  Alignments for each domain:
  == domain 1    score: 97.9 bits;  conditional E-value: 6.2e-32
   TIGR00706  35 lvlkidSPGGtvvaseeiyeklkklk.akkpvvasvgnvaaSGgyyialaadeivanegtlvGSiGVilesvnveklleklGieveaiksGeyKdilsdtrelteeekeilqslvnesyeqFvevvakgRnlsveevkklAdGrvftgrqalklkLvDklgslddaleklkk 205
                  v++i+SPGG+v++     ++l ++  a + +   + +vaaSGgy++a+ a+ i+a + ++vGSiGV+ +  n +++l++  i+++ + +Ge+K +     e+tee+k  +++++++ +  F + va +R    + +  + +G  + + qa++ +LvD++ + d+ le + +
  MMETSP1061-20121228|4788_1 333 CVVTINSPGGAVSQYGLAASQLVRIRkAGIHLTCCIDTVAASGGYMMASVANTICAAPFAVVGSIGVVTHVPNFQRFLNEHKIDAYLMTAGEHKRTIDVIGEVTEENKAKMKEQLEDIHTAFKDHVALARPQLRDAMETVGTGEHWLAVQAKEKGLVDEIRTSDEYLESVCE 504
                 599************999999999986999*****************************************************************************************************999****************************9998887766 PP

>> TIGR00705  SppA_67K: signal peptide peptidase SppA, 67K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   3.2e-28   6.5e-25     354     516 ..     334     497 ..     329     527 .. 0.95

  Alignments for each domain:
  == domain 1    score: 85.3 bits;  conditional E-value: 3.2e-28
   TIGR00705 354 vLRvnspGGsvfAseiirrelealkaaGkPvivsmGavAAsGgYWiasaadyivAdpntitGsiGvfsvlptvenlldriGvhvDevstselanv.sllrplteeeqaimqlsveagYerFlevvskaRnlskeqvdkvAqGrvwtGedAkkvGLvDelGglde 516
                 v+ +nspGG v+   +   +l ++++aG      + +vAAsGgY +as a+ i A p  + GsiGv++ +p++  +l++  +++  ++ +e + +  ++   tee++a m+ ++e+    F + v+ aR   ++++++v  G+ w+  +Ak+ GLvDe+   de
  MMETSP1061-20121228|4788_1 334 VVTINSPGGAVSQYGLAASQLVRIRKAGIHLTCCIDTVAASGGYMMASVANTICAAPFAVVGSIGVVTHVPNFQRFLNEHKIDAYLMTAGEHKRTiDVIGEVTEENKAKMKEQLEDIHTAFKDHVALARPQLRDAMETVGTGEHWLAVQAKEKGLVDEIRTSDE 497
                 788**********************************************************************************999999988879*************************************************************987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 2008.37
//
Query:       MMETSP1061-20121228|4789_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-28   95.4   0.0    4.9e-17   60.2   0.0    3.0  3  TIGR00071 hisT_truA: tRNA pseudouridine synthase A


Domain annotation for each model (and alignments):
>> TIGR00071  hisT_truA: tRNA pseudouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1     0.046   1.9e+02       4      22 ..      22      40 ..      20      43 .. 0.86
   2 !   31.2   0.0   8.9e-12   3.7e-08      23      72 ..      66     116 ..      63     193 .. 0.90
   3 !   60.2   0.0   1.2e-20   4.9e-17      98     210 ..     246     411 ..     236     424 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.046
   TIGR00071  4 alkiaYdGsnyhGmqvqpe 22
                al ++Y G  + G+ +q +
  MMETSP1061-20121228|4789_1 22 ALSLQYHGGSFLGVTYQGP 40
                7899***********9965 PP

  == domain 2    score: 31.2 bits;  conditional E-value: 8.9e-12
   TIGR00071  23 kktvegelekaLeevgakkkkf.vmsagRTDkGVhAlgqvislkikkeied 72 
                 +++veg l +aL ++  + +   ++ + RTD+GVhAl+++++++i+ +++ 
  MMETSP1061-20121228|4789_1  66 HRSVEGRLREALDDLFGNSNWEnIQVSSRTDRGVHALKNTLHVDIRTNDKS 116
                 799***********9996666678*********************998775 PP

  == domain 3    score: 60.2 bits;  conditional E-value: 1.2e-20
   TIGR00071  98 kFdaRfsassrkYryiln.nkk.......................................yr.saldlekleaaakellGkhdFsnFtkakdskeksairtikkikvse...........seeliilkiiGssFllhqvRkivaalvlvgre..klpveevsklle 210
                 +++ Rfsa++r Y y l  + +                                       +  ++ld+ +++aaak+l G+hdFs+F+ +  +++ +++ t++ + +              ++l++l + ++sFl+ qvR++v++lv+vg++   l++++v++l+ 
  MMETSP1061-20121228|4789_1 246 DWNSRFSATQRTYVYRLLlCPDnendddddddgdwqtslllsssllsssmfgipfewdrawCLaYPLDVRAMQAAAKHLEGTHDFSAFRGRL-CQRSTPVVTLHTVAIDVapswcgetnrrYPQLVTLSFAANSFLYRQVRNMVGCLVEVGKQggRLSPDDVRELVR 411
                 799********988866544445678999999999999999999999999999999999985569***********************9966.************999988999*999988899***************************9722578888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 2094.23
//
Query:       MMETSP1061-20121228|4790_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1860.42
//
Query:       MMETSP1061-20121228|4792_1  [L=814]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       356  (0.0867869); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 2827.35
//
Query:       MMETSP1061-20121228|4793_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|4794_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.33    9.2   4.2       0.88    7.8   2.9    1.7  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.9   0.00021      0.88      19      46 ..     173     200 ..     154     210 .. 0.58

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00021
   TIGR02811  19 avgaaagavaaatgrvasasaaaepsep 46 
                  ++aaa a+aa+t++  + ++a+ ++e 
  MMETSP1061-20121228|4794_1 173 SAAAAATAAAATTPTNSNSNTATVTNES 200
                 4566666666777766655555444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1319.89
//
Query:       MMETSP1061-20121228|4799_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 617.95
//
Query:       MMETSP1061-20121228|4796_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-15   53.4   0.0    4.5e-15   52.4   0.0    1.4  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      4e-06   24.3   0.0    5.7e-06   23.8   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0   2.2e-18   4.5e-15      18     191 ..     245     412 ..     232     424 .. 0.83

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 2.2e-18
   TIGR03903  18 eerlvaRFrReialCarLs.hPnivaLlDsGeaedgllFavFeyveGrtlrevLaad...GaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimv.saadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqG 191
                 + + + + + e+++  +L+ h n+++L D   + d+ lF + e+  G  l ++L ++   G+   a  ++ +  +L a+a  h++ + hRDLk +n ++ s +dv s  k++DFG+++   +      ++lt    v+Gs  Y aPe L+  + t + Dl++ G+iv   L G +   G
  MMETSP1061-20121228|4796_1 245 DPKYISKLQEEVNVLRELRgHDNVIRLYDV-FCVDNELFIITELGRGGDLFHLLTTHpkhGVT-EAYAAKTVSEMLSAVAFLHSRSICHRDLKLENWVLeSGKDVWSPLKLIDFGLSTHYRQ-----GERLT---RVVGSSYYVAPEVLKK-SYTEACDLWSLGVIVYMLLSGAPPFYG 412
                 4677889999****999987********98.577779*****************996222443.34456778899*********************7774779999**********996544.....33465...59************86.789************999999876666 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   2.8e-09   5.7e-06      93     143 ..     302     366 ..     249     393 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 2.8e-09
   TIGR03724  93 l.........ellkevGelvgklHkagivhgDlttsNiivkddk.ly....liDfGLgkkskeve 143
                 +         ++++e+  +v+ lH+  i+h Dl  +N +++++k ++    liDfGL+ + ++ e
  MMETSP1061-20121228|4796_1 302 KhgvteayaaKTVSEMLSAVAFLHSRSICHRDLKLENWVLESGKdVWsplkLIDFGLSTHYRQGE 366
                 334444444589999999**********************75442334444*******9876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|4802_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-16   56.8   0.5    1.8e-10   38.5   0.0    2.6  3  TIGR01388 rnd: ribonuclease D


Domain annotation for each model (and alignments):
>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.1   4.2e+02      21      54 ..     270     304 ..     248     308 .. 0.63
   2 !   38.5   0.0   4.3e-14   1.8e-10      57     166 ..     326     441 ..     321     450 .. 0.84
   3 !   15.6   0.1   3.9e-07    0.0016     199     300 ..     517     619 ..     469     630 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.1
   TIGR01388  21 valDTEFvRerTfyPklgLiqvadge.elaliDPl 54 
                 ++ D E   +       +Liq+a+++ ++ +iD l
  MMETSP1061-20121228|4802_1 270 IGFDIECYNKGKSLQITCLIQLATNDgREYVIDVL 304
                 66666666666666778*****9765278889876 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 4.3e-14
   TIGR01388  57 idlspllelladesvvKvlHaase.DlevfknlfgvlPkPlfDTqiaaall.....GlgesvgydklVkevleveldKsesrtDWlaRPLtdkqleYAaaDVtyLlelyekLserl 166
                 ++++ l+++++d+++vK+ H  +  D++ +++ fg+  +  fDT  aa +l     Gl++ +++  l ++ l  +l+ + + +DW++RPLt  ++ Y   DV yL++l + ++  l
  MMETSP1061-20121228|4802_1 326 DEVHGLARFFEDPTIVKIGHGIRSlDVQSLQRDFGLFVVNAFDTYEAATVLrlpemGLAKICAHYGLKNSELYKDLKAQHQASDWMHRPLTSDKILYGRYDVHYLVRLRRLMMRDL 441
                 678899**************98655********************999986333336666777777777777888888899**************************988777666 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 3.9e-07
   TIGR01388 199 iksarklkpkelavlkalaaWRereAreRdkprnfvlkeeallelarlaprnleeleelglk.gkeirksgdkllalvkeAlalPedelpkalkellespgak 300
                  k +r l   +la+  +la+WRe  Ar+ +k  + +   e l  +a l p    +l+++  + ++   +sg++  + ++  l l +++l++  ++++e p +k
  MMETSP1061-20121228|4802_1 517 KKDGRDLTKSQLALYAKLASWRESVARNEEKLPGVLCPLEYLARVAILRPATEGALKQIRWDlPQFLTSSGPHHRQHMAAMLGLVRESLAEDGVAQTEFPTYK 619
                 35567788889*********************************************99864413333444444444444445555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 2081.13
//
Query:       MMETSP1061-20121228|4801_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 2084.52
//
Query:       MMETSP1061-20121228|4800_1  [L=1390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.16s 00:00:00.76 Elapsed: 00:00:00.57
# Mc/sec: 3163.19
//
Query:       MMETSP1061-20121228|4798_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 3105.87
//
Query:       MMETSP1061-20121228|4808_1  [L=951]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-97  324.2  10.4    9.4e-87  289.6   0.2    3.3  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    5.4e-96  320.3   3.5    8.4e-92  306.5   0.1    2.1  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    2.6e-85  284.9   7.2    6.4e-78  260.5   0.0    2.9  3  TIGR00958 3a01208: antigen peptide transporter 2
    2.3e-81  271.9   7.8    5.9e-71  237.5   0.0    2.1  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.9e-73  245.8   9.4    1.5e-72  242.9   0.1    2.2  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    4.3e-73  244.5   5.5    2.2e-67  225.6   0.0    2.1  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.6e-70  236.3   0.4    2.5e-70  235.6   0.3    1.2  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.8e-67  226.0   3.4    3.2e-64  215.2   0.1    2.1  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.8e-66  223.0   1.7    1.8e-66  223.0   1.2    2.4  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.9e-59  198.6   1.2    1.1e-53  180.6   0.0    2.1  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    5.8e-59  197.9   0.9    1.9e-58  196.2   0.2    2.1  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    5.5e-54  181.4   0.0    5.5e-54  181.4   0.0    2.2  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.4e-37  127.2   0.0    2.6e-37  126.3   0.0    1.4  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.2e-34  116.8   0.3    3.5e-34  116.1   0.2    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    3.2e-34  115.5   2.0    4.4e-34  115.0   0.2    1.9  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.4e-33  114.3   0.0    2.3e-33  113.6   0.0    1.3  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    9.7e-33  111.6   0.1    1.6e-32  110.8   0.1    1.2  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    6.7e-30  102.1   0.3    2.1e-29  100.5   0.0    1.9  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    6.7e-30  102.2   0.1    1.2e-29  101.3   0.1    1.5  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.2e-28   98.2   0.0      2e-28   97.5   0.0    1.3  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.3e-28   97.3   0.2    3.8e-28   96.6   0.1    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.6e-27   94.2   0.3    3.1e-27   93.3   0.2    1.4  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    4.4e-27   92.9   0.0    6.7e-27   92.2   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    8.5e-27   92.0   0.1    1.7e-26   91.0   0.1    1.4  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      2e-26   90.7   0.1    3.8e-26   89.8   0.0    1.4  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    8.3e-26   88.6   0.0    1.5e-25   87.7   0.0    1.4  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.3e-25   88.1   0.1    2.5e-25   87.2   0.1    1.5  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.6e-25   86.6   0.0    5.8e-25   85.9   0.0    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.9e-25   85.8   0.2    1.3e-24   84.7   0.0    1.6  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    6.1e-25   86.0   0.0    1.1e-24   85.2   0.0    1.3  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    7.5e-25   85.8   0.1    1.3e-24   85.0   0.1    1.4  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.2e-24   84.1   0.0    1.4e-23   81.5   0.0    2.0  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    8.8e-24   81.8   0.1    1.8e-23   80.8   0.0    1.4  1  TIGR00955 3a01204: pigment precursor permease
    1.4e-23   81.2   0.1    3.8e-23   79.8   0.1    1.7  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.7e-23   80.0   0.0    3.4e-23   79.0   0.0    1.4  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    4.4e-23   80.0   0.0    7.1e-23   79.3   0.0    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.3e-22   78.2   0.0    2.3e-22   77.3   0.0    1.3  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.3e-22   77.2   0.1    4.6e-22   76.2   0.1    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.6e-22   77.1   0.7    3.6e-22   76.6   0.0    1.5  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      1e-21   75.1   0.1    1.7e-21   74.4   0.1    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    2.2e-21   74.5   0.1    3.9e-21   73.6   0.1    1.3  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    8.6e-21   71.8   0.1    7.5e-20   68.7   0.0    2.0  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.4e-20   71.2   0.9    1.1e-13   48.5   0.1    2.0  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    7.5e-20   69.4   0.3    1.4e-19   68.5   0.2    1.4  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    5.1e-19   66.5   0.1    9.4e-19   65.6   0.0    1.3  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.3e-18   65.3   0.1    2.4e-18   64.4   0.1    1.4  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.2e-18   64.4   0.1    8.6e-18   62.4   0.0    1.9  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.4e-16   57.9   0.1    3.5e-16   56.5   0.1    1.5  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.5e-16   57.9   0.6    2.4e-15   53.9   0.4    2.0  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.7e-16   58.0   0.1      3e-16   57.2   0.1    1.3  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    5.1e-16   56.9   0.0    1.1e-15   55.8   0.0    1.5  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.9e-14   51.6   0.1    3.6e-14   50.7   0.0    1.4  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.8e-13   45.5   3.0    4.3e-13   44.9   0.0    2.0  2  TIGR01257 rim_protein: rim ABC transporter
    9.4e-13   44.5   0.1    1.5e-12   43.8   0.0    1.2  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    5.2e-12   42.9   3.7    5.2e-12   42.9   2.6    2.2  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    2.6e-09   34.8   0.1    6.2e-09   33.5   0.0    1.6  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    4.6e-08   29.5   0.2    9.5e-07   25.2   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
     0.0012   14.4   0.4      0.018   10.5   0.0    2.2  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.19    9.5   4.2       0.04   11.7   0.2    1.7  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.42        29     161     228 ..      62     129 ..      45     187 .. 0.77
   2 !   38.7   0.5   1.4e-12   9.6e-11      81     262 ..     403     586 ..     393     595 .. 0.87
   3 !  289.6   0.2   1.3e-88   9.4e-87     269     570 ..     619     927 ..     610     929 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.42
   TIGR02203 161 vvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlr 228
                  ++l+ +   l++++s+  +k  ke+ ++ +e ++++    +  ++ k+ gg   ++  ++ ++n+ +
  MMETSP1061-20121228|4808_1  62 SIMLFRLSIALIQIASRSTQKYFKESHHAATEDMTAAVAKKKKEKEEKVSGGLGEKKSNYGSIANNGM 129
                 35566777778888888888888887777666666666667778889999999999999999987644 PP

  == domain 2    score: 38.7 bits;  conditional E-value: 1.4e-12
   TIGR02203  81 kvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretlt.vigllivllylsWq.ltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialv 262
                 +v++    +l ++ f +l +l+   + +++ g++l  +        + +  ++  l+   +  v+  ++++ y+s++ l+ ++   + v ++ + +++ + +k+ k +++s +e   ++ ++l ++  vk f g+e+e++Rf+ +  r +  ++ v+ ++sl +   +l++++ la+ l +a++
  MMETSP1061-20121228|4808_1 403 RVAQDAFVQLSETTFVHLHKLSLDWHLRKKLGEVLRSMDRGISACDTLMRHLFLFLIPALAEcVVVCIMFVTYYSYApLAGVIFYSIWVYVVWTIIYTLHRKKLRKAVVRSDNEWHDIATDSLVNFETVKYFTGEEYERQRFGDAITRYQARSVNVQATRSLLDITQRLVMQICLALSLSLATM 586
                 6888899999999**************************9999999999999999998765415555666778888647777776666766666777777788999999*******************************************************************99998876 PP

  == domain 3    score: 289.6 bits;  conditional E-value: 1.3e-88
   TIGR02203 269 ltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDsppek.deG......tralervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLhkiqf 570
                 + vG++va++t +l+l++pl  L  v + +   ++   ++ +ll ++p+  d+       + + e     vef nv f+yp + +++ l+++s+k++ G+++a+vG+ G+Gk+t+ +l  RFy+   G + ++g+d++ ++ +sLR+ + +v q   +F+dti env+Yg++ +++++e+e+a+++a+l ++++++++G dt vG++g kLsGG +qR++iaR llkd   ++LDeatsaLD+  e  vq+aL+rl  +Rt lviahRL ti++aD+i+vl++G + e+Gth eLl++ GlYa + + q+
  MMETSP1061-20121228|4808_1 619 MEVGDFVAVLTYILQLFRPLNYLGTVYNAIVMAIVDLTNLSQLLAQNPDLvDAPdamilpQTNEEDEDIVVEFDNVRFHYPTQpKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRR-NATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEKGGLYADMWNRQL 927
                 569**********************************9999999887765133311111122333345569**********8736789***********************************************************************************9.9999******************************************************************************************************************************9988775 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.5   3.1e-05    0.0021      93     245 ..     412     567 ..     328     599 .. 0.72
   2 !  306.5   0.1   1.2e-93   8.4e-92     274     575 ..     621     926 ..     609     927 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.1e-05
   TIGR02204  93 lrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvit...svkltslvllavPlvllPillfg...rrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikarall.i 245
                 l ++ f hl +ls  ++ +++ gevl  +    +   +++   +   +  l  ++  + ++++t    + l++++  ++ + ++  ++++   +++rk+ ++s ++       a+++l + +tv+ ++ ee+er+rf+ a+ +    +++  ++r+ll i
  MMETSP1061-20121228|4808_1 412 LSETTFVHLHKLSLDWHLRKKLGEVLRSMDRGISACDTLMRHLFLFLIPALAECV-VVCIMFVTyysYAPLAGVIFYSIWVYVVWTIIYTlhrKKLRKAVVRSDNEW---HDIATDSLVNFETVKYFTGEEYERQRFGDAITRYQARSVNVQATRSLLdI 567
                 5667788888888888888888888877766666666655544443333333333.333444431115679999998887766555544411145666666666655...556899************************98755555555555665522 PP

  == domain 2    score: 306.5 bits;  conditional E-value: 1.2e-93
   TIGR02204 274 aGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdik.aPaq...pkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlarLq 575
                  G++ + + y +     l  l+ v++ +  a      l++ll +++d+  aP     p++  ++    +ef++v+f+yP++p++k l+g+++++r G t a+vGP+GaGk+t+ +l+ rfyd   Ga++++G d+r ++++ lr+++ +vpq +++f   ++en++yGr +a++ee+e+aa+ a+  +fi+++++G+dtl+G+rg++LsGG kqr++iar +lkd   +LLdeatsaLd+ +e  vq+al++l ++rt lviahrL t+++ad i+vl++G + e+Gth+eL++kggLya + + q
  MMETSP1061-20121228|4808_1 621 VGDFVAVLTYILQLFRPLNYLGTVYNAIVMAIVDLTNLSQLLAQNPDLVdAPDAmilPQTNEEDEDIVVEFDNVRFHYPTQPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEKGGLYADMWNRQ 926
                 5666666667666777788899999999999999999*****999997515554222444444555669***************************************************************************************************************************************************************************************************************************************986655 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.38        27     282     349 ..      48     112 ..      18     114 .. 0.65
   2 !   23.2   2.7   5.6e-08   3.9e-06     174     394 ..     342     576 ..     186     599 .. 0.60
   3 !  260.5   0.0   9.1e-80   6.4e-78     415     710 ..     619     922 ..     612     923 .. 0.95

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.38
   TIGR00958 282 llrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsg 349
                  l +   +l+ l++ ++l +rL++  l+++      +k f + +++ +e++  avak ++  eE +sg
  MMETSP1061-20121228|4808_1  48 KLTYGGAVLCWLAISIML-FRLSI-ALIQIAS-RSTQKYFKESHHAATEDMTAAVAKKKKEKEEKVSG 112
                 344555555555554433.55553.4555543.4567899999*********************9997 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 5.6e-08
   TIGR00958 174 vlgevliPkytgrvidtllqdks.....vealakaiflltllslaSsllaglrgGs...feyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlv..kllgllifmlslSpr.LtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeil....qlnkkkalayalylwttell 394
                 + +  ++     ++++ ++  k+      e++ + ifl + +  + ++   + +G    +  + +    ++ e  f  l +  ++++ ++k Ge+   +       +++l  ++ ++l      ++++ ++f    S+  L+ v + ++ + ++ + ++    +kl + v  +  +  ++a + l  ++TV+ F+ Ee+E +rf +++++ +    +++ +++l  ++  ++++++
  MMETSP1061-20121228|4808_1 342 MTWVCVLASKVCNLVSPIFLGKAstalaHEQYGRCIFLACAYASVQFFGLLFTQGQgliYLRVAQDAFVQLSETTFVHLHKLSLDWHLRKKLGEVLRSMDR-GISACDTLMRHLFLFLIPALaeCVVVCIMFVTYYSYApLAGVIFYSIWVYVVWTIIYTLHRKKLRKAVVRSDNEWHDIATDSLVNFETVKYFTGEEYERQRFGDAITRYQarsvNVQATRSLLDITQRLVMQIC 576
                 333333333334444444444440111133445556666655555554444444433335555555556677777778888999**********9855544.45568888888888876554114444555555566534999*****************************************************************9865111144555555555555555554 PP

  == domain 3    score: 260.5 bits;  conditional E-value: 9.1e-80
   TIGR00958 415 vssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldRkPql..elsgtlapknleG....kveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykql 710
                 ++ g+ v+ l Y lql + +++L++vy+ ++ a+     + ++l  +P l   ++++  p++ e     +veF +V F YP++p+++ lk+ +f+++ G+++a+VGP G GK t+  l+ ++Y+  gG v + gk+++ +  k+l+  +++V q   +f+ ++reN+ YG +++++ee+  aa+ a+  +Fi+ +++g+dt vg++G  lsgG kqr+ iAR L+++P+ ++LDeAtSALD+ +e  +qe  ++  ++rtvl+iahrL t+++ad+i+vl++g v e Gth++L ek ++y+ +
  MMETSP1061-20121228|4808_1 619 MEVGDFVAVLTYILQLFRPLNYLGTVYNAIVMAIVDLTNLSQLLAQNPDLvdAPDAMILPQTNEEdediVVEFDNVRFHYPTQPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEalDRLGSQRTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEKGGLYADM 922
                 8899********************************************98333567777765543233379***********************************************************************************************************************************************************************************87778899*******************************************987 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   3.3   1.3e-11   8.7e-10     144     382 ..     343     583 ..     330     599 .. 0.84
   2 !  237.5   0.0   8.5e-73   5.9e-71     392     692 ..     619     926 ..     613     928 .. 0.91

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.3e-11
   TIGR01846 144 vllislllqllalvsPllfevvidkvlvhrglstlsvlalallavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvreleqirefltgsaltvvldllfvvvflavmf..fys.pkltlvvlvslviylllsvivspilrkrvedkfeks.aeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwf 382
                 + ++ l+ ++  lvsP+++ +     l h+       la a   v  + + ++  +  ++ ++++   v+l+   + hl  l l +  +++ G+++  +       + l    +  ++  l   v +++mf  +ys + l +v+  s+ +y+++ +i+  + rk++ +   +s  e + + ++s+   et+k  + e+  ++r+   +++y a+s +v+ +  l + +  l+ ++  al l +
  MMETSP1061-20121228|4808_1 343 TWVCVLASKVCNLVSPIFLGKA-STALAHEQYGRCIFLACAYASVQFFGLLFTQGQGLIYLRVAQDAFVQLSETTFVHLHKLSLDWHLRKKLGEVLRSMDRGISACDTLMRHLFLFLIPALAECVVVCIMFvtYYSyAPLAGVIFYSIWVYVVW-TIIYTLHRKKLRKAVVRSdNEWHDIATDSLVNFETVKYFTGEEYERQRFGDAITRYQARSVNVQATRSLLDITQRLVMQICLALSLSL 583
                 34556788999*****999875.6799********************************************************************988855445556666677777777887888888887556763569***********875.67788999999998776515668999***************************************99999999999999999888754 PP

  == domain 2    score: 237.5 bits;  conditional E-value: 8.5e-73
   TIGR01846 392 lsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdilds.PteassagkaalpelkGa.....iefenirfryk.edspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqqq 692
                 + vG++va+  +  ++  P+  l  ++     + + l+ l ++l + P     + ++ lp+ + +     +ef+n+rf y  + +++ l+ +s++++ G++  ivGp+G+Gk+t+++l+ r+y    G v v+g+d+ ++  ++lr  +gvv q + +f+ +ir+n++ ++ ++ +e++ +aa+ a   +fi+++ +G++t vg++G +lsGG +qr+++ar l+++P  ++ldeatsald  +e+++++ l+++   rtv++iahrl t+r+ad+i+vl++G ++e+G+h+ell+k+glya+++++q
  MMETSP1061-20121228|4808_1 619 MEVGDFVAVLTYILQLFRPLNYLGTVYNAIVMAIVDLTNLSQLLAQnPDLVDAPDAMILPQTNEEdedivVEFDNVRFHYPtQPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEKGGLYADMWNRQ 926
                 668888888888888888888888888888888888888888886515545556667777665433334489********61557789**************************************************************************************************************************************************************************************************************************99 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   3.3     0.021       1.4      19     242 ..     336     562 ..     330     594 .. 0.63
   2 !  242.9   0.1   2.2e-74   1.5e-72     270     568 ..     619     924 ..     613     936 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.021
   TIGR01192  19 frvavivianivla..aitiaepilfgriidaisskkdvlvilll..wagfgvfniiayvlvareadrlahgrratllteafgriismplswhsqrgtsnalhtllr...asetlfglwlefmrqhlatfvallllipvalamdlrlslvlvvlgivyvliaklvmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldwwala 242
                 +rv +i++   vla  +  +  pi++g+   a+++++    i+l   +a+   f ++          r+a    + l + +f  +  + l wh ++   + l ++ r   a++tl+   + f+   la  v + ++  + ++    l+ v+     vyv+ + +   + k+ + av +   +     +ds+ n   v+ +   e e    ++f + +   q   ++  a  
  MMETSP1061-20121228|4808_1 336 NRVRAIMTWVCVLAskVCNLVSPIFLGKASTALAHEQYGRCIFLAcaYASVQFFGLLFTQGQGLIYLRVAQDAFVQLSETTFVHLHKLSLDWHLRKKLGEVLRSMDRgisACDTLMRHLFLFLIPALAECVVVCIMFVTYYSYA-PLAGVIFYSIWVYVVWTIIYTLHRKKLRKAVVRSDNEWHDIATDSLVNFETVKYFTGEEYE---RQRFGDAITRYQARSVNVQATR 562
                 5677777777777633456778888888888888877666555441133333333332223333346899999999********************999999998654449****999999*******9998888776666555.4444444444455554444333333344444444444555579999999999877554444...4445555554555544544444 PP

  == domain 2    score: 242.9 bits;  conditional E-value: 2.2e-74
   TIGR01192 270 lsvgeviafigfanlligrldqlkafvtqivearakledffdledsvkereepadarelknvkga.....vefrdisfefans..sqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllr 568
                 ++vg+ +a + +   l   l+ l +  + iv a   l ++ +l     +  +  da  l++ + +     vef ++ f+++    ++g++ vsf+++ g t aivgptgagktt+  l+ r yd   g + ++g d+  v+++slr si  v q a ++n +iren++ gr +at+ee+ +aa+ a    fie+  +g+dtlvg+rg +lsgge+qr++iar +lk+   ++ldeatsald  te  v++a+d l  +rt ++iahrl t+r+ad ++ l+ g + e g+ del +k+g +a + +
  MMETSP1061-20121228|4808_1 619 MEVGDFVAVLTYILQLFRPLNYLGTVYNAIVMAIVDLTNLSQLLAQNPDLVDAPDAMILPQTNEEdedivVEFDNVRFHYPTQpkTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEKGGLYADMWN 924
                 67999999999999999999999999999999999999999998888888888888888766543334449*********9753378********************************************************************************************************************************************************************************************************************9998765 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   1.5   5.2e-07   3.6e-05     161     400 ..     341     586 ..     324     599 .. 0.68
   2 !  225.6   0.0   3.1e-69   2.2e-67     407     708 ..     619     922 ..     612     924 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 5.2e-07
   TIGR03796 161 laglllvlpglvvpafskifvDeilve.eaqewlrplllgllltal..lqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsgql....attvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvggl 400
                 +++ + vl++ v   +s if+ +      ++++ r ++l+ + + +  +  ++t  q  +  r+ +   v+ s + + h+ +l  +++ +++ ge+ + ++   + +++l ++l    + ++ ++v+v + ++  + y ++ ++i  ++ +  v+   + + +r+++ + + +     + +a  +l + et+k  + e+   +r+  + ++    + ++++++ ll++  +l++++  al l ++++
  MMETSP1061-20121228|4808_1 341 IMTWVCVLASKVCNLVSPIFLGKASTAlAHEQYGRCIFLACAYASVqfFGLLFTQGQGLIYLRVAQDAFVQLSETTFVHLHKLSLDWHLRKKLGEVLRSMDRGISACDTLMRHLflflIPALAECVVVCIMFVTYYSYAPLAGVIFYSIWVY-VVWTIIYTLHRKKLRKAVVRSDNEWHDIATDSLVNFETVKYFTGEEYERQRFGDAITRYQARSVNVQATRSLLDITQRLVMQICLALSLSLATM 586
                 55566677777777778888776544314455666666665555440044444555556666777888999*************************98887776666666666600005555555555555555566666555555555444.4444555667777888888888999***************988887777777777777777777777788888888888877777777766655 PP

  == domain 2    score: 225.6 bits;  conditional E-value: 3.1e-69
   TIGR03796 407 ltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgysal.eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgc..tciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarL 708
                 + +G +va  + + ++ +p++ l ++ +++     dl+ l+ +l ++ d     ++     ++++e  +  ve++nv+f y ++ +++ ++++s++++ G+  A+vG+ G+Gk ti++l   +y+   G + ++gk+ + ++++ l++s+ +v q  ++f+ t+r+n+    +  ++e+l++Aa+DA++   i ++ +g+++ + + g  lsGG++qR+ iAR L k+P+ ++lDEatsaLD+ tE +++e+l r g   t++++aHRL tiR++d+iivl++G v e GtH+ell+k+g Ya++
  MMETSP1061-20121228|4808_1 619 MEVGDFVAVLTYILQLFRPLNYLGTVYNAIVMAIVDLTNLSQLLAQNPDLVDAPDAMI-LPQTNEEDEDIVVEFDNVRFHYPTQpKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSqrTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEKGGLYADM 922
                 889********************************************99988874444.444444677789**********876256789*********************************************************************************************************************************************************************9965599****************************************976 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.6   0.3   3.6e-72   2.5e-70     143     686 .]     345     927 ..     323     927 .. 0.85

  Alignments for each domain:
  == domain 1    score: 235.6 bits;  conditional E-value: 3.6e-72
   TIGR03797 143 lvgllgtllglvvPlatgilldeviPdaerslllqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasra.mgvsqirrllsgatlkallssifallnlv.lllvysl.klalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisll..........................aaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdee...kvdp....gkLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR..iviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelarRQl 686
                 ++ l+  +  lv P+  g   ++++ + + ++ + +a+a + + +  llf+  q+l+ lR+++ + ++l  +++ +L +l+  +  + + g+++  +  g+s+   l+    l  + +   +++  +  + +ys+  la v    + v ++ t + +l + + ++ +++ +++ + ++ + +   + ++  + ee    ++    ++ ++ ++++q +++ll++++  +  ++ a+   la++ +                          +  ++++g+f+a  t + ++ + +  l +   ++++++   + +  +l+++p+  ++    + p    ++    +e d+v F+Y ++  ++ L+ vs+k++ G+  aivG+ G+GK t+ rl + F     G+v   G+d++ + ++++R  +GvV Q + ++ ++i en+  g +  t++e  +aar a l + i++m  g  T++ + g +lSGG +QR+ iAr l + P  +l+DEATSALD  t + V e+l++l   R  +viAHRL Tirnad+i+vl++G v+e+G+++eLl+k+Gl+a++ +RQl
  MMETSP1061-20121228|4808_1 345 VCVLASKVCNLVSPIFLGK-ASTALAHEQYGRCIFLACAYASVQFFGLLFTQGQGLIYLRVAQDAFVQLSETTFVHLHKLSLDWHLRKKLGEVLRSMdRGISACDTLMRHLFLFLIPALAECVVVCImFVTYYSYaPLAGVIFYSIWVYVVWTIIYTLHRKKLRKAVVRSDNEWHDIATDSLVNFETVKYFTGEEYERQRFGDAITRYQARSVNVQATRSLLDITQRLVMQICLALSLSLATMGIkqridccvahgcdagvseccqsidmaTCPGMEVGDFVAVLTYILQLFRPLNYLGTVYNAIVMAIVDLTNLSQLLAQNPDLVDApdaMILPqtneEDEDIVVEFDNVRFHYPTQpKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRnATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRtvLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEKGGLYADMWNRQL 927
                 3334445666677777666.456777778888888889999999999**************************************999999976554168888887777666554444333333322022345541466666666677777777788888888889999******************************************************99998877777665555555456899********************99899**********************99999999999999999999999999986543111344411003334457889******76515578*******************************************************************************988777**********************************************************************************77653389*********************************************6 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.3   0.00021     0.014     275     385 ..     467     577 ..     379     590 .. 0.86
   2 !  215.2   0.1   4.5e-66   3.2e-64     403     691 ..     621     915 ..     614     917 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00021
   TIGR03375 275 vllfllvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvs 385
                 v+ +++v ++   pl+ v +  + + ++ +++   + +kl ++ +r  ++ + +  +sl ++et+k   +e+  ++++ +++   +  s++++++ +ll  +  lv q++ 
  MMETSP1061-20121228|4808_1 467 VVCIMFVTYYSYAPLAGVIFYSIWVYVVWTIIYTLHRKKLRKAVVRSDNEWHDIATDSLVNFETVKYFTGEEYERQRFGDAITRYQARSVNVQATRSLLDITQRLVMQICL 577
                 455566666767789999999999999999988888889999999999999***********************************************9999999999986 PP

  == domain 2    score: 215.2 bits;  conditional E-value: 4.5e-66
   TIGR03375 403 mGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklpvereeekrllsreklkGe.....ielknvsfkYpee.ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdevlea 691
                 +G  +A+         Pl+ l ++   +  a + l++l +l++++ +  ++   +  ++ + e     +e++nv+f+Yp + +++ Lk vs+k++ G   ai+G +G+GK+t+ +l  ++y+   G+v+++g d+r ++++ lr++ig+vpq +++f+ t+r+N+++g+++a+ eel +aa+ a + +f+++  +G d+ +g+rG +LSgG +q v++aR llkdp+ +lLDE tsalD+ +e+++ e+L +l +++T+++++Hr   ++ +d iivl++G +  +G++de+le+
  MMETSP1061-20121228|4808_1 621 VGDFVAVLTYILQLFRPLNYLGTVYNAIVMAIVDLTNLSQLLAQNPDLVDAPDAMILPQTNEEdedivVEFDNVRFHYPTQpKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEK 915
                 6666666666666778888888888888899999999999998887655544443333333222234489********87736789*************************************************************************************************************************************************************************************************************9986 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.0   1.2   2.6e-68   1.8e-66      10     529 .]     345     898 ..     331     898 .. 0.82

  Alignments for each domain:
  == domain 1    score: 223.0 bits;  conditional E-value: 2.6e-68
   TIGR02857  10 llgvvsallliaqAallarvvssliaagealaelltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfar...yl.pqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfL....SslvLellatlsvAlvAVyiGlrll........................agkldlaegLlvLlLaPevylPlRqlgaqyHakaegvaaaealvevld.aeeqpeaekapltaaass.....slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529
                 ++ ++s +  ++  ++l+++   l  a e+     +++ a a v +   l++  +  +  r+a ++  ql e+ + ++ +l+  +  +kk ge+   + +g++a d  + +   +l p+l+ +v+v +++++       ++++i   ++ +  +  i+   + ++  ++  ++ ++  +   d +   +t+k f  ++ e+++  ++  +y+ r ++v  +  L      lv+ +  +ls  l    +G++                             ++  +   vL    +++ Pl  lg+ y a   ++  + +l ++l+ +   + a +a +  + +       +e++nv + y+ +   + lk+vs++++ g+++a+vG+ GaGK+t+ +l  +f ++ +Ga++vng++++ ++++s+r +i+ vpQ++ +f++t++en++ +r++a+++e+++a+++a+l ++++++++g++t +G+rg +LSgG++qR+++Ar ll+d   +llDE t++LD  te  v+eal++l ++rtvl++aHrl ++++ad+i+vl
  MMETSP1061-20121228|4808_1 345 VCVLASKVCNLVSPIFLGKASTAL--AHEQYGRCIFLACAYASVQFFGLLFTQGQGLIYLRVAQDAFVQLSETTFVHLHKLSLDWHLRKKLGEVLRSMDRGISACDTLMRHlflFLiPALAECVVVCIMFVTY-YSYAPLAGVIF-YSIWVYVVWTIIYTLHRKKLRKAVVRSDNEWHDIATDSLVNFETVKYFTGEEYERQRFGDAITRYQARSVNVQATRSLlditQRLVMQICLALSLSLAT--MGIKQRidccvahgcdagvseccqsidmatCPGMEVGDFVAVLTYILQLFRPLNYLGTVYNAIVMAIVDLTNLSQLLAqNPDLVDAPDAMILPQTNEedediVVEFDNVRFHYPTQPktKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRNADNIIVL 898
                 444444444444444444444333..4455556666678888888889999999999********************************************98877655442114437777887777666555.45556777665.5555666666666677788888889999999**********************************9999988766544111134566665555555543..44444345779999999999999888876544888888888999999*******************************5334444444443333333566789**********66554689*********************************************************************************************************************************************************************************************986 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.6   7.9e-06   0.00055     225     390 ..     406     575 ..     341     598 .. 0.77
   2 !  180.6   0.0   1.6e-55   1.1e-53     465     706 ..     680     923 ..     621     925 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 7.9e-06
   TIGR01193 225 qrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalastilslfl..dl..silvivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalk.avlkl 390
                 q   +++  +   hl +l +++   ++ Ge++  +    +  d+l   +  lfl   l   ++v + +v  +    l  +++ +i vy+v  i+++   +kl k +++++        ++l   et+k +t+ee + ++  +  + y  +s++ + ++    + +  v+++
  MMETSP1061-20121228|4808_1 406 QDAFVQLSETTFVHLHKLSLDWHLRKKLGEVLRSMDRGISACDTLMRHL-FLFLipALaeCVVVCIMFVTYYSYAPLAGVIFYSIWVYVVWTIIYTLHRKKLRKAVVRSDNEWHDIATDSLVNFETVKYFTGEEYERQRFGDAITRYQARSVNVQATRSLLDITQrLVMQI 575
                 555555555566799***************9987777777777776543.333322341145666666667778889999**********999***9*****************999**********************************99999886543322022222 PP

  == domain 2    score: 180.6 bits;  conditional E-value: 1.6e-55
   TIGR01193 465 telenlngdievndvsysyGyg..sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllkl.kdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyasli 706
                 t++e     +e+++v ++y     ++ l+ +s+k+++  ++++vG +G+Gk+t+ +l+ +f++   G +++ngk+++ +++++lr +i  +Pq   +f+ +i en+  g ++n+++ee+++a + a++ + ie ++ G++t + + + ++sgG kqr+++ar+ll d   ++lde+ts ld+lte  + e l +l +++t++ +ahrl   +++d+iivl++G + e+G+h+ell++ G ya++ 
  MMETSP1061-20121228|4808_1 680 TNEEDEDIVVEFDNVRFHYPTQpkTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYG-RRNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLgSQRTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEKGGLYADMW 923
                 4444455557889******98622567******************************************************************************9987.678999****************************************************************************9994579******************************************9886 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       3.1   2.1e+02     157     203 ..      57     102 ..      31     123 .. 0.59
   2 !  196.2   0.2   2.8e-60   1.9e-58      90     530 .]     414     886 ..     371     886 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 3.1
   TIGR02868 157 lvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllega 203
                   la++++++ + ++ + + a+rs+++  ++++ + +++++++++++
  MMETSP1061-20121228|4808_1  57 CWLAISIMLFRLSIA-LIQIASRSTQKYFKESHHAATEDMTAAVAKK 102
                 123333333333333.4456778888888888888888888777654 PP

  == domain 2    score: 196.2 bits;  conditional E-value: 2.8e-60
   TIGR02868  90 vrvYerLaraalallarlrrGdlLarlvaDvdalqdl...lvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgv...........................eavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldak...vevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
                   ++ +L + +l++  r + G++L  +   + a + l   l   ++P+++  vv+ ++ +     + ++a v+  ++    vv  ++  +  ++  +a+ r+ +e ++ ++d l + ++ + +   e  +++  +a  ++ + +   +a++ l +  + l++ + ++l+l ++                             a+  g   + ++Avl    L +f +l+ l ++ +++  +   +  ++++l+++   v++++a    + ++++e++ +e+ +++++yp++++   lkgvs++++ G  +a+vG++GaGK+t+  l++++ d l G v ++g +v  +s++ +r+ + v++q a +F+ t+reN++ +r +at eel++a + ++L + ++++ dG dt +g++g  lSGGe+qR+ +AR Ll+d   +lLDE t  LD  te+++ e+L    ++rtv++++hrl
  MMETSP1061-20121228|4808_1 414 ETTFVHLHKLSLDWHLRKKLGEVLRSMDRGISACDTLmrhLFLFLIPALAECVVVCIMFVTYYS-YAPLAGVIFYSI-WVYVVWTIIYTLHRKKLRKAVVRSDNEWHDIATDSLVNFETVKYFTGEEYERQRFGDAITRYQARSVNVQATRSLLDITQRLVMQICLALSLSLATmgikqridccvahgcdagvseccqsidMATCPGMEVGDFVAVLTY-ILQLFRPLNYLGTVYNAIVMAIVDLTNLSQLLAQNpdlVDAPDAMILPQTNEEDEDIVVEFDNVRFHYPTQPKtkGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRL 886
                 467889999***************9998888665433000444455665555554443333322.334444444443.4456677788888888899999999*****9999999999998776666666666666666655555555555555556666665555555544444457888888888999999*9999999899999999999999986.599***************************99999555444444444455555589***************98788**********************************************************************************************************************************************************************************96 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   1.9       1.2        81      19     240 ..     351     575 ..     335     596 .. 0.63
   2 !  181.4   0.0   7.9e-56   5.5e-54     270     543 ..     634     915 ..     610     915 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.2
   TIGR01842  19 niLlLvsslymlqvyDrvlaskslstLlvltvlvvvlylvlglleavRskvlvrigekldkalnkkifkaaieatl.erkkkeslqalrDldq.lrqFltgtgliaffDlPwlpiyllvvfllhpylGllalvgav.....vlvalallneaatkkklkeateasikankl.ldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqs 240
                  + +Lvs++++ +     la ++    ++l+ + + + ++  l+      + +r++++  ++l+++ f    + +l  + +k+   +lr +d+ +    t      +f +P l   ++v+ ++  y+  + l+g++     v v+ + +  ++ +kkl++a   s ++ ++ +  +l n e ++ ++  +  ++r+ +  +++ + + + + + + l  +    R+v+q+
  MMETSP1061-20121228|4808_1 351 KVCNLVSPIFLGKA-STALAHEQYGRCIFLACAYASVQFFGLLFTQGQGLIYLRVAQDAFVQLSETTFVHLHKLSLdWHLRKKLGEVLRSMDRgISACDTLMRHLFLFLIPALAECVVVCIMFVTYYSYAPLAGVIfysiwVYVVWT-IIYTLHRKKLRKAVVRSDNEWHDiATDSLVNFETVKYFTGEEYERQRFGDAITRYQARSVNVQATRSLLDIT---QRLVMQI 575
                 34557788886655.456788888888899999999999988999999999999999888888888877777777754555566677777764234444444445567788888888888888888877777776522211333333.445667888888888877776651566788999999887777777777666666655555555444444433...3444444 PP

  == domain 2    score: 181.4 bits;  conditional E-value: 7.9e-56
   TIGR01842 270 aLaPidqaievWkqfsaarkaykrlkelleelpa...reealklPepege.....levenvslvpp.eekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevlkk 543
                    P++ +  v+  ++ a    ++l++ll++ p    + +a+ lP+ + e     +e +nv +  p + k+k lkg+sf+++ G + ai+Gp g+Gk+++ rl    +    G v+++g d++ + +++l  siG +Pq   +f+ t+ en+   ++na+ e++ +aa+ a+   +i ++++G+dt +g++G +LsgG +qR+++aR l  dP++v+LDe  + LD+  e  + +al +l  + +tv+vi+hr   ++ +d+i+vl++G +++ G+++e+l+k
  MMETSP1061-20121228|4808_1 634 LFRPLNYLGTVYNAIVMAIVDLTNLSQLLAQNPDlvdAPDAMILPQTNEEdedivVEFDNVRFHYPtQPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQ-RTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEK 915
                 56688888888999999999**********99862225677****98764444337889**998761557789***********************************************************************************************************************************************************************876.589********************************9975 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.3   0.0   3.7e-39   2.6e-37      13     233 ..     703     915 ..     688     918 .. 0.87

  Alignments for each domain:
  == domain 1    score: 126.3 bits;  conditional E-value: 3.7e-39
   TIGR00972  13 ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdkl.kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                 + + lk v++++++ + ta++Gp+G+Gk+t+ r + r+ d++      G+v ++gkd+    +++++lr+++G+v q  + f+ +i +nv yg r    ++ ++  ++  + Lk    +d+  d l  + +l+LsGG +qr++iar+l  +P  +LlDe tsaLD  + ++++e ++ L ++ t++++ h +  ++r +d+++++ +G + eeg+ ++++ek
  MMETSP1061-20121228|4808_1 703 KTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVL-----GGAVKVNGKDVRM--VSQKSLRASIGVVPQAASMFNDTIRENVKYGRRNATHEELEQA-ARDAQLLKFIESMDDGWDTLvGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLG-TIRNADNIIVLNHGVVAEEGTHDELLEK 915
                 5689************************************98.....8*********975..5899***************************998864443333.334456777776677666652799**************************************************************8.6899******************999876 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.2   5.1e-36   3.5e-34       4     222 ..     691     915 ..     688     926 .. 0.84

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 5.1e-36
   TIGR03864   4 veglsfayg...krralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlry...haaLhGlsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaae 222
                  ++++f+y    k + l++vs+++++g+ +a++Gp GaGk+t+  l  r y+   g +kv+G+d+r  +++ l+ ++Gvv q+ ++  d ++++n++y    a+ + l +a+  +++ + ++ +  g      ++  +L+GG+++rv iar ll +P+ +LlDeat  LD+ + ++++e++ +l  +   +vL   h +  ++++d+++vl++G v+ +G+ +el ++
  MMETSP1061-20121228|4808_1 691 FDNVRFHYPtqpKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRaSIGVVPQAASMFND-TIRENVKYgrrNATHEELEQAARDAQLLKFIESMddGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQ--RTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEK 915
                 5667777752225678***************************************************999988538*******999777.9*******4433444455555555555555554411345556778889**********************************************955..5678889****************************9876 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.1       2.4   1.7e+02    1062    1133 ..     434     507 ..     427     526 .. 0.74
   2 !  115.0   0.2   6.4e-36   4.4e-34    1284    1516 ..     688     922 ..     624     926 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.4
   TIGR00957 1062 gnlvnrfskeldvvdsvlaevikmllgslfnvigavivill...atplaaviilplallyflvqrfyvassrqlk 1133
                  g+++  + + + + d ++ ++ ++l+ +l + +  +i+ +     +pla vi   +  +y++   +y+   ++l+
  MMETSP1061-20121228|4808_1  434 GEVLRSMDRGISACDTLMRHLFLFLIPALAECVVVCIMFVTyysYAPLAGVIFYSI-WVYVVWTIIYTLHRKKLR 507 
                  78888999999999999999999999999998888887664222478888887765.456666666666555554 PP

  == domain 2    score: 115.0 bits;  conditional E-value: 6.4e-36
   TIGR00957 1284 rvefrnyslryredl.dlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfs.qysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqrgifysm 1516
                   vef n  + y  +     l+ ++ +++ g    ivg tgagk++++  +fr  +   g ++++g ++  +  + lr  + ++pq   +f  ++r n+     + ++ee+  a   a l +f+ ++ d+ d    + g +ls g++q v +ar+ll+    ++ldeat+a+d  t+  +q ++     + tvl iahrl ti +   ++vl++g+vae ++  ell++ g++  m
  MMETSP1061-20121228|4808_1  688 VVEFDNVRFHYPTQPkTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRrNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEKGGLYADM 922 
                  58999988888766414579*****************************************************************************98654156799**************************************************************************************************************************99887 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.6   0.0   3.3e-35   2.3e-33       6     219 ..     704     914 ..     700     928 .. 0.92

  Alignments for each domain:
  == domain 1    score: 113.6 bits;  conditional E-value: 3.3e-35
   TIGR01186   6 klgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvd.l.eeyedryPd...elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilr 219
                 ++g++ v++++  G    i+G++G+Gk+t+ rl+ r+ +   G + ++G+d+  +s++ l    r  i++v q  ++f   ti +n+++g + +  +e e+  +  ++lk ++ + +++     d   +lsGG +qrv +ar l  +P  +l+dea sald l+ +++q+ l +l    q+t++ i+h l  ++r +d i++l++G +   Gt de+l+
  MMETSP1061-20121228|4808_1 704 TKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSL----RASIGVVPQAASMF-NDTIRENVKYGRRNATHEELEQAARDAQLLKFIEsMdDGWDTLVGDrglKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLG--SQRTVLVIAHRLG-TIRNADNIIVLNHGVVAEEGTHDELLE 914
                 7899********************************************************....99***999988777.57****************9999999999***9973555555555543337********************************************997..58**********6.79***********************97 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.8   0.1   2.3e-34   1.6e-32       5     214 ..     703     915 ..     699     947 .. 0.87

  Alignments for each domain:
  == domain 1    score: 110.8 bits;  conditional E-value: 2.3e-34
   TIGR01188   5 efkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd.evRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelke.aadkkvk....tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKer 214
                 ++k ++gv++k+++g+  +++GP GAGKtt+ ++        +G ++v+G Dv   ++ ++R sigvvpq as+ +d t ren++   +    ++ e+ +r ++ll+++e ++   d  v+    ++sgG ++r+++a+ l+++P+ + LDE t+ LD+ t  ++ + ++ l + + t+l+ +h l  +   ad+++++++G+++ e+t +eL e+
  MMETSP1061-20121228|4808_1 703 KTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQkSLRASIGVVPQAASMFND-TIRENVKYGRRNATHEELEQAARDAQLLKFIESMDdGWDTLVGdrglKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGS-QRTVLVIAHRLGTIR-NADNIIVLNHGVVAEEGTHDELLEK 915
                 67899***********************************************966554389**************99.89*****9999999999999***********866515678887444469*******************************************9976.689********9986.59*******************9765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       6.8   4.7e+02      82     115 ..     253     286 ..     251     291 .. 0.88
   2 !  100.5   0.0     3e-31   2.1e-29       2     233 ..     689     912 ..     688     916 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 6.8
   TIGR02315  82 gmifqeynlierltvlenvLsgrlgakstlksll 115
                 +m +q+y++ +  + +  v+++  g+ st++s++
  MMETSP1061-20121228|4808_1 253 TMYYQQYQNTSSEDLMVVVVMALYGVLSTVESVW 286
                 5889***************999999999998877 PP

  == domain 2    score: 100.5 bits;  conditional E-value: 3e-31
   TIGR02315   2 levenlskvypng..kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233
                 +e++n++ +yp++  ++ lk v++++++G  +a++G+ GaGk+t+ r   r+ +   g+++++gk+v+ +++k+   lr++ig++ q   +  + t+ env  gr +a+   ++l +  ++++  k +e+++  g + l   r  +LsGG++qRv+iaR l+++p+ +l DE +++LD  + + v ++l r+  ++  tv+v  H++   ++ ad i+ l++g +  +g+ +el
  MMETSP1061-20121228|4808_1 689 VEFDNVRFHYPTQpkTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKS---LRASIGVVPQAASMF-NDTIRENVKYGRRNAT--HEELEQAARDAQLLKFIESMDD-GWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQR--TVLVIAHRLGTIRN-ADNIIVLNHGVVAEEGTHDEL 912
                 78999*****98633689**************************************************888876...5789*****998776.67999****9996553..4555566667777777777765.8999******************************************************9765..778888***98765.9*********99888877776 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   0.1   1.8e-31   1.2e-29       1     212 [.     688     900 ..     688     902 .. 0.88

  Alignments for each domain:
  == domain 1    score: 101.3 bits;  conditional E-value: 1.8e-31
   TIGR02673   1 iielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvg.ledkakal....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelek 212
                 ++e+++v ++y+   +++ Lk vs+k+++g  + ++G+ GaGktt+ +l +       G+v+v+g+dv+ ++++   +lR +igvv q   +++  t+ env    + + ++e e   r  ++l+ ++ ++d  ++l      +lsgGe+qRv+iaR ++++P+ +l De t  lD  +++++ + l +l ++  tv+v +h    +++ + +++ l++
  MMETSP1061-20121228|4808_1 688 VVEFDNVRFHYPtqPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQK---SLRASIGVVPQAASMFN-DTIRENVKYGRRNATHEELEQAARDAQLLKFIEsMDDGWDTLvgdrGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQ-RTVLVIAHRLGTIRNAD-NIIVLNH 900
                 699********93345789*************************************************999988...58**********99876.59*************99999999999****9973566666542211579**********************************************987.58888899988887654.4555655 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   2.9e-30     2e-28      16     224 ..     703     914 ..     686     918 .. 0.87

  Alignments for each domain:
  == domain 1    score: 97.5 bits;  conditional E-value: 2.9e-30
   TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgse.ekyPg....qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYe 224
                 +++ lk +s+++++g   +++GP G Gktt+ r+   + +   Ga+ ++g+d+  ++ +  +   G+v q+ ++f n t++en++yG +n   ++ e+a+r ++lL+ ++  + + +   g    +lsGG +qrv++ar l   P ++LLDe  saLD     +++e l +l  +    t++v   +   +  aD i+v+n+g++   gt  e+ e
  MMETSP1061-20121228|4808_1 703 KTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKslRASIGVVPQAASMF-NDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGwDTLVGdrglKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQR---TVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLE 914
                 67889************************************************998866225689********99.66*******************************75544313333322238****************************************9999998774...566666677899*******************999866 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.1   5.5e-30   3.8e-28      18     226 ..     712     919 ..     704     940 .. 0.86

  Alignments for each domain:
  == domain 1    score: 96.6 bits;  conditional E-value: 5.5e-30
   TIGR02142  18 lelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee..rriseekvielL.....giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdls 226
                 +++     ta+ G  G+Gkt++ rl         g ++++g+ +   ++       +  +g+v q A++F   ++ren++YG+++a+ ee  + ++++++++++     g + L+  +  kLsGGekqRv+i+R lL +P  +l+De  +aLD+   + +   L+rl ++ +  +l ++H l  + r ad+++vl++G v+ +g+ +e+l++  l 
  MMETSP1061-20121228|4808_1 712 FKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQ----KSLRASIGVVPQAASMFND-TIRENVKYGRRNATHEEleQAARDAQLLKFIesmddGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRT--VLVIAHRLGTI-RNADNIIVLNHGVVAEEGTHDELLEKGGLY 919
                 555555789********************************97765555....466889***********87.8***********9987622456777888776444556789******************************************************98765..7999****998.56*********************9987665 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.2   4.5e-29   3.1e-27      17     226 ..     707     914 ..     701     924 .. 0.89

  Alignments for each domain:
  == domain 1    score: 93.3 bits;  conditional E-value: 4.5e-29
   TIGR03873  17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarv.elssl.adrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevlt 226
                 +++v  ++  G+ t+++GP G+Gk+t+ rl         G+v+++g+d++ +s+++    + +v q ++   + ++r+ v  Gr         +++ da++ + + ++  + ++l  dr l  lsGGe+qrv +ar l ++P ++llde t  ld  +  ++ +++  l +++ tv+v  h l   ++ +d+++vl++G v+  G+  e+l 
  MMETSP1061-20121228|4808_1 707 LKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAAS-MFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDdGWDTLvGDRGL-KLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRL-GSQRTVLVIAHRLGT-IRNADNIIVLNHGVVAEEGTHDELLE 914
                 578999999**********************************************99999*****9876.57889*********9888887788889999987655543134555156665.6********************************************99.8999999999***85.7899***************9999886 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.0   9.7e-29   6.7e-27      12     220 ..     703     913 ..     689     917 .. 0.83

  Alignments for each domain:
  == domain 1    score: 92.2 bits;  conditional E-value: 9.7e-29
   TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFPvlke.......mlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeld 220
                 +++ l++vs+++++g ++a++G  g+Gktt+ +     ++v  G+++++g+d++   +++  +a i+ vpq  ++f + t++en++ g ++++++e +  ++  +l   +++       +   rg +LsGG +q ++iaR L+++P ++lLDe t  +     + +++++++l +++  ++l++ + l   ++ ad+++vl++G v +eg+++el 
  MMETSP1061-20121228|4808_1 703 KTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRM-VSQKSLRASIGVVPQAASMFND-TIRENVKYGRRNATHEELEQAARDAQLLKFIESmddgwdtLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQR--TVLVIAHRLGTIRN-ADNIIVLNHGVVAEEGTHDELL 913
                 57789***********************************************975.56788999************87.9********999888744444444444444444000111145678999**********************************************9975..78999999998877.****************999875 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.1   2.5e-28   1.7e-26      13     221 ..     704     915 ..     690     919 .. 0.90

  Alignments for each domain:
  == domain 1    score: 91.0 bits;  conditional E-value: 2.5e-28
   TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvql.....eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyde 221
                 ++ l+ v+++++ G  +a++Gp+G+Gk+t+ r+   + +   G + ++G+dv  v+ +  + +iG v q  ++f+  t+r+n+ +G +   +++ +  a+  +ll++++      + l      +lsGG++qrv++ar l  +p  +llde  +ald+     +++ l +l  +    tv+v   +  ++  ad+i+vl++G + + g+ +e+ ++
  MMETSP1061-20121228|4808_1 704 TKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKslRASIGVVPQAASMFND-TIRENVKYGRRNATHEELEQAARDAQLLKFIESmddgwDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQ---RTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLEK 915
                 67899***********************************************99887732568**********987.9*****************************975121113455556789**********************************************976...678888889999********************9999875 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   5.5e-28   3.8e-26      22     229 ..     705     914 ..     683     927 .. 0.85

  Alignments for each domain:
  == domain 1    score: 89.8 bits;  conditional E-value: 5.5e-28
   TIGR03258  22 vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlpp..ykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvqlsdaaar.l....paqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralyd 229
                   l+ +s+++  G   a++G++G+Gktt+ r+   f    GG + v ++d+  +     + +++++ q  ++f   ++ env +G r     + + a r a+ lk ++  d +   l      +lsGG +qrv++ar l  +p  +llde  sald+   +sv+e l +l     + tvl+++h r  ++  ad+i ++++G +++ G+  +l +
  MMETSP1061-20121228|4808_1 705 KGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQksLRASIGVVPQAASMFND-TIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWDtLvgdrGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGS---QRTVLVIAH-RLGTIRNADNIIVLNHGVVAEEGTHDELLE 914
                 358999********************************************9887651156789999999999976.89****************************987666643132222569****************************************99999986...569999888.678999******************998876 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   2.2e-27   1.5e-25      14     205 ..     707     897 ..     695     898 .. 0.86

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 2.2e-27
   TIGR03608  14 lkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvgl.....ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvie 205
                 lk +s+k+ +G ++aivG  G+GK+t+  +  ++ ++  g v ++gk+     +  ++k lr ++g + q  ++  n+t++en++ +  +  +++ e+  +  ++l+ ++      ++    +  +lsgGekqRv++ar llk++  +l DE t++LD+ +++ v e l+ l ++ +t++++ H     ++ad++i 
  MMETSP1061-20121228|4808_1 707 LKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDV----RMVSQKSLRASIGVVPQAASMF-NDTIRENVKYGRRNATHEELEQAARDAQLLKFIESmddgwDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQ-RTVLVIAHRLGTIRNADNIIV 897
                 8999********************************************3....345566789*******998776.67*********998888877777777776666643210225566677799********************************************99875.7888899**999999999996 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.1   3.7e-27   2.5e-25       5     219 ..     692     903 ..     688     904 .. 0.85

  Alignments for each domain:
  == domain 1    score: 87.2 bits;  conditional E-value: 3.7e-27
   TIGR02982   5 relnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleav.glee....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                  ++  +y + + +++ l+ ++++++ g    + Gp+G+Gktt+  l   +  v  G +kv gk+++ +s+k+   +r +iG++ qa  +++  t ++nv+ +   +++ ++ e++a+ ++ll+ +  +++     +  +  +lsgG kqrv+iar+l + P +vl de t+ald+ +  +v e l +l  ++  t+l+++h    +  ad i+ +++G +
  MMETSP1061-20121228|4808_1 692 DNVRFHYPT-QPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKS---LRASIGVVPQAASMFND-TIRENVKYGRRNATH-EELEQAARDAQLLKFIeSMDDgwdtLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQR--TVLVIAHRLGTIRNADNIIVLNHGVV 903
                 555555544.5678889***************************************************9985...799**********9986.99******9987777.444555555566666624555444366677889**********************************************9876..89*******9999********99975 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.0   8.3e-27   5.8e-25      14     219 ..     700     903 ..     688     905 .. 0.87

  Alignments for each domain:
  == domain 1    score: 85.9 bits;  conditional E-value: 8.3e-27
   TIGR02211  14 gkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekvg.....lekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkl 219
                  + +++ lkgvs+++++g ++aivG +G+Gk+t+  l+  + +   G v+++Gk+++ +s+++   lr  ++G + q   ++ d t+ env      + +++ e + r ++ll+ ++      +  +  +  +lsGGe+qrv+iar+l+++P+ vl de t+ ld+ t +++ e l +l +++  ++lv++h l  ++++d+ + l++g +
  MMETSP1061-20121228|4808_1 700 TQPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKS---LR-ASIGVVPQAASMFND-TIRENVKYGRRNATHEELEQAARDAQLLKFIEsmddgWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQR--TVLVIAHRLGTIRNADNIIVLNHGVV 903
                 4567889****************************************************9875...66.589*****9998877.9********999999999999999999998862111134567789999**********************************************9865..568999*************9999876 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   1.8e-26   1.3e-24       1     190 [.     722     914 ..     722     919 .. 0.88

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 1.8e-26
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpae..krsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqlee.....fakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiye 190
                 ++Gp+G+Gktt+ rl+  + ++  G ++++g+dv  v+ +  + s++vv q+ ++f   t+ env +g +    ++ e ++r  ++L+ ++  +     +   +  +lsGG +qrv++ar++ k P  +LlDe+ saLD      +q+ l +l  +   t vlv   +   +  +d i vl++G +a  g+ +e+ e
  MMETSP1061-20121228|4808_1 722 IVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKslRASIGVVPQAASMFND-TIRENVKYGRRNATHEELEQAARDAQLLKFIESMDdgwdtLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQR--T-VLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLE 914
                 68********************************99986532568***********75.9*****************************985541222234567789*********************************9999****999999885..4.4455557789*******************9999876 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   1.5e-26   1.1e-24      21     237 ..     701     911 ..     684     931 .. 0.82

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 1.5e-26
   TIGR02769  21 kqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhlt..sldeserkariaellelvelrsev.ldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvae 237
                 + +++ l++vs+++++G t a++G +GaGk+t++rl+  +     G v+ +G+d+  + +   k++r  + +v q   s +n   ++re ++   r+ t  +l++++r a+  +++e ++   ++ +  +  +lsGG  qr++iar l  +P +++ldea s ld +   s+ e l +l  +   ++l+i+h l  +++ a++++vl++G + ee +  e
  MMETSP1061-20121228|4808_1 701 QPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQ---KSLRASIGVVPQA-ASMFN--DTIRENVKYGRRNATheELEQAARDAQLLKFIESMDDGWDTlVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQR--TVLVIAHRLGTIRN-ADNIIVLNHGVVAEEGTHDE 911
                 4566789***********************************************988765...6677799999985.57888..5788888888777651156666666666666666654433314567889**********************************************9876..6799*****99865.89********9999876554 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.1   1.9e-26   1.3e-24       1     213 [.     688     900 ..     688     903 .. 0.86

  Alignments for each domain:
  == domain 1    score: 85.0 bits;  conditional E-value: 1.9e-26
   TIGR00960   1 mikfeqvskaykga.aelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekv.....GlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlsk 213
                 +++f++v  +y++  ++  l++v++k+ +G  + +vG++GaGk+t+ +l         G ++v+g+d+  ++++    lr  iG+v q   +++d t+ +nv    r +  +  e   r  + l+ +     G      +   +lsgGe+qrv+iar ++++Pa +l de t+ ld  +   + e l+++  +  tvlv +h    + +    +++l++
  MMETSP1061-20121228|4808_1 688 VVEFDNVRFHYPTQpKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQK---SLRASIGVVPQAASMFND-TIRENVKYGRRNATHEELEQAARDAQLLKFIesmddGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQ-RTVLVIAHRLGTIRNAD-NIIVLNH 900
                 689********98635679*************************************************999987...59**********999876.89*********999888777777766666552223356666677889****************************************9999999876.68899999888776654.4555655 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.9   1.3e+02     152     187 ..     440     475 ..     435     490 .. 0.88
   2 !   81.5   0.0     2e-25   1.4e-23       4     209 ..     692     905 ..     689     909 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.9
   TIGR01277 152 ldepfsaldpklreemlalvkkladekkltlllvth 187
                 +d   sa d ++r+  l l+  la+   + +++vt+
  MMETSP1061-20121228|4808_1 440 MDRGISACDTLMRHLFLFLIPALAECVVVCIMFVTY 475
                 68899*******************999999999986 PP

  == domain 2    score: 81.5 bits;  conditional E-value: 2e-25
   TIGR01277   4 ddviyeykhlple.....fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsa..pyerpvsmlfqennlfahltvrqniglGlkpglk....lnavqkekvedvarqv..GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                 d+v+++y ++p +      ++++ +G   ai+G++GaGk+t+  l   f     G++kvn+kd+  ++    +  + ++ q   +f+  t+r+n+  G + +       +a +  ++ +  +++  G + ++     +lsGG++qrv++arcl+++   +llde  sald +    +   + +l ++  +t+l+++h+l   ++ a++++v+++G ++ 
  MMETSP1061-20121228|4808_1 692 DNVRFHYPTQPKTkglkgVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSqkSLRASIGVVPQAASMFND-TIRENVKYGRRNATHeeleQAARDA-QLLKFIESMddGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQ--RTVLVIAHRLGT-IRNADNIIVLNHGVVAE 905
                 677777766665411112466789**************************************987654115566788999******86.9********8766541100444444.44444444433788888888889***********************************99999999999986..699*****9975.6789*********9876 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   2.6e-25   1.8e-23      34     254 ..     700     912 ..     674     915 .. 0.82

  Alignments for each domain:
  == domain 1    score: 80.8 bits;  conditional E-value: 2.6e-25
   TIGR00955  34 kkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekv...eakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254
                 ++p+ + lk+vs +++ G+  A++G+ GaGKtT+ + l fr    + + g+v +nG+ v    +k +ra  + v q   +++  t+re++ +  +   +++l +  + ++  + +e++   +  dt++g+ g    lSgGe++R+++a  ll+dP ++++DE Ts LD  + +sv ++L +l ++++ v++  H       ++ d+ii+l++G v+ +G+ +e+
  MMETSP1061-20121228|4808_1 700 TQPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTI-SRLFFRFYD-VLG-GAVKVNGKDVrmvSQKSLRASIGVVPQAASMFND-TIRENVKYGRRNATHEELEQAARDAQLLKFIESM--DDGWDTLVGDRGL--KLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRT-VLVIAHRL--GTIRNADNIIVLNHGVVAEEGTHDEL 912
                 34788889*************************5.778888765.555.58*****976111567777778888777655544.99********999999999999999999999876..79*******7775..8**********************************************98865.88888974..457999***********999998887 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.1   5.5e-25   3.8e-23      13     237 ..     704     915 ..     689     917 .. 0.83

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 5.5e-25
   TIGR03005  13 ltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmv.Gladkadal....paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237
                  + l+g+++++ +G   a++Gp+G+Gk+ti r+++ +  + +G +kv+g+ +  ++          +   + +r  iG+v q   +f   t+ +nv     +    +  e  +r  +ll+++  + d  d+l      +lsGG+kqrv+iar+l   p  +l+de+tsald      v + l rl+s++  t+l+++h++g  r+ ad ++ +++G ++eeG  de+++k
  MMETSP1061-20121228|4808_1 704 TKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVS----------Q---KSLRASIGVVPQAASMFN-DTIRENVKYGRRN-ATHEELEQAARDAQLLKFIeSMDDGWDTLvgdrGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQR--TVLVIAHRLGTIRN-ADNIIVLNHGVVAEEGTHDELLEK 915
                 46799******************************************765543333..........2...46799************7.5788898876544.455566666777788887734666666652222579********************************999999*********975..99********9997.8*******************9875 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   4.8e-25   3.4e-23    1234    1440 ..     706     914 ..     683     930 .. 0.88

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 4.8e-25
   TIGR01271 1234 vlqdlsfsveagqrvgllgrtgsgkstllsallrllst.egeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeq.ysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkqydsiqklln 1440
                   l+ +sf +  g +  ++g tg+gk+t+   ++r+ +   g ++++g     v+ +  r ++gv+pq   ++  t+r n+    +  + ee+ + a +  l   ie + d  d  + d g  ls g kq + +ar +l     +llde ++ ld +t   ++ +l +  s+ tv++  hr+ ++ + ++++v++   v +  + + ll+
  MMETSP1061-20121228|4808_1  706 GLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVlGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRnATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRNADNIIVLNHGVVAEEGTHDELLE 914 
                  58899***********************9999**998636789************************************987655156899999*****************************************************************************************99999999999887776666666665 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0     1e-24   7.1e-23      14     219 ..     703     912 ..     688     921 .. 0.88

  Alignments for each domain:
  == domain 1    score: 79.3 bits;  conditional E-value: 1e-24
   TIGR03522  14 kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedv.lknslevrkniGylPehnPlyldlyvre...ylefsaalyklkgrklkkrveelielv..GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleel 219
                 k k l+ vsf++++G  +  +GP GaGk+t+ ++   +    +G+v+v+g+dv + + +  r +iG +P+   ++ d  +re   y + +a+  +l++ +++ ++ ++ie +  G  +    +  +ls G +qrv +a++ll dP  ++lde t+ ld      ++e + +++ ++tv++ +h +  ++   d++i++n+G +  + + +el
  MMETSP1061-20121228|4808_1 703 KTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVrMVSQKSLRASIGVVPQAASMFNDT-IREnvkYGRRNATHEELEQAARDAQLLKFIESMddGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRN-ADNIIVLNHGVVAEEGTHDEL 912
                 457899***********************************************4456677899**************7.5661225556899999**999*********99844555666677789************************************************************9987.699*******88877777776 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   3.4e-24   2.3e-22       3     216 ..     708     915 ..     707     931 .. 0.85

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 3.4e-24
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreial.ilqnPrsafnPlltikeqllet..lkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqe 216
                 ++v+++++rg  +a+vG  G+Gk++ +     + d       G + ++gk++  ++ ++ ++++ ++ +  s fn   ti+e+++      ++e+l++ a++  +  + ++  +  ++++     +lsGG  qRv ia +ll ++++++ De t++lD  ++  v + l++l ++r  ++l+i+h lg + + ad+++v+++G + e+gt +el+++
  MMETSP1061-20121228|4808_1 708 KGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYD----VLGGAVKVNGKDVRMVSQKSLRASIgVVPQAASMFND--TIRENVKYGrrNATHEELEQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQR--TVLVIAHRLGTI-RNADNIIVLNHGVVAEEGTHDELLEK 915
                 689**********************9999999998....67899********999888877775466667788996..566666555005566677777777666666666667789999****************************************************9987..69********99.67******************999875 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.2   0.1   6.6e-24   4.6e-22       4     183 ..     703     883 ..     698     886 .. 0.87

  Alignments for each domain:
  == domain 1    score: 76.2 bits;  conditional E-value: 6.6e-24
   TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldy.srkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdi.sg....leerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis 183
                 +++ lkg++++++rg+++a++G+ GaGk+t+ + +        G+v ++G+++   s+k+   lr  +++v q +   +f  ++ e+v +g +n   +e e  +r  + l+ ++  ++    l      +lsgGek+rv+ia  +   p ++llde t+ ld+  ++ + e+l++l  + + +vi+
  MMETSP1061-20121228|4808_1 703 KTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMvSQKS---LRASIGVVPQAA--SMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESmDDgwdtLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIA 883
                 5678************************************************98624555...58899*999987..69***************999998888888888998864132211144555678***********************************************999988886 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.0   5.2e-24   3.6e-22      14     229 ..     700     913 ..     688     922 .. 0.85

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 5.2e-24
   TIGR02314  14 gdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvg.lsdkkdsyps....nlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseif 229
                 ++ k k l+ vs+ + +g+   ++g +gagk+t+ r    +     gav v+gkd+  +s+  l   r  ig++ q   ++   t+ +nv      +++ + +   + ++ll ++  + d  d+        lsgg+kqrv+iar l  +p  +l deatsald  t  s+ e l  +  +   t+l+i+h +  +++  d++ v+++g + e+gt  e++
  MMETSP1061-20121228|4808_1 700 TQPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSL---RASIGVVPQAASMFN-DTIRENVKYGRRNATHEELEQAARDAQLLKFIEsMDDGWDTLVGdrglKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQ--RTVLVIAHRLGTIRN-ADNIIVLNHGVVAEEGTHDELL 913
                 5567899*****************************************************9988...789******988775.79*****987655544444444566788887751566677765422227*******************************************999876..599********9976.799*************998876 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.1   2.4e-23   1.7e-21      21     224 ..     708     914 ..     686     919 .. 0.84

  Alignments for each domain:
  == domain 1    score: 74.4 bits;  conditional E-value: 2.4e-23
   TIGR01288  21 ndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfglstreieevi..psllefar.leskadvrva....dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalid 224
                 + +sf + +g    ++gp gagk+ti+rl + +     g + v g++v     +  ra igvvpq  ++ +  t+ren+  +gr    +  e+e++    +ll+f   ++   d+ v     +lsgg k+r+++ar+l++dp +++lde t+ ld  +   + e l  l    +t+l+ +h +    r  d + vl++g    eg  d l++
  MMETSP1061-20121228|4808_1 708 KGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMvSQKSLRASIGVVPQAASMFN-DTIRENV-KYGRRNATH-EELEQAArdAQLLKFIEsMDDGWDTLVGdrglKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRL-GSQRTVLVIAHRLGT-IRNADNIIVLNHGVVAEEGTHDELLE 914
                 5689*****************************************99976145678*********999865.59****7.699987765.5778776225799997425666777775222269******************************************876.6679*******9975.5899***************9999987 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.1   5.7e-23   3.9e-21      16     229 ..     705     912 ..     685     917 .. 0.87

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 5.7e-23
   TIGR03411  16 kalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldev 229
                 k l+ +s+++++g   +i+Gp GaGktt+  +         G v+++gkd++ +++ +  r+ ig   q++s+f++ t++en++    + + + + l + +++++  +  e ++  g ++ +  +  +Ls G+kq++ i+  l+++p+++llDe ++ + +  ++++ e l +l ++r+v+v+ h ++ +r+ a+++ vl++G v  eG+ de+
  MMETSP1061-20121228|4808_1 705 KGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQ-KSLRASIGVVPQAASMFND-TIRENVKYG--RRNATHEELEQAARDAQLLKFIESMDD-GWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRN-ADNIIVLNHGVVAEEGTHDEL 912
                 67899*********************************************976665.567999999********76.9****8865..556677788766666666555555543.67888899999***************************************************************98.56789************9986 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1      0.54        37     243     335 ..     483     574 ..     453     588 .. 0.73
   2 !   68.7   0.0   1.1e-21   7.5e-20     447     639 ..     683     885 ..     653     898 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.54
   TIGR00954 243 agllal.vlllsgv.vLrklrpplgkltveeaalegeyrylhsrlisnsEEiAfyqGnkvEkekvkesfekLveklnkvilvrfiydlledfvlK 335
                 + ++ +  +++  + + +  r++l k   +  +++ e++ +    + n E + ++ G++ E+++     ++   +  +v  +r  +d+ + +v++
  MMETSP1061-20121228|4808_1 483 GVIFYSiWVYVVWTiIYTLHRKKLRK---AVVRSDNEWHDIATDSLVNFETVKYFTGEEYERQRFGDAITRYQARSVNVQATRSLLDITQRLVMQ 574
                 44444433444444044444444444...44567899999999999*****************99999998888888888888888888888876 PP

  == domain 2    score: 68.7 bits;  conditional E-value: 1.1e-21
   TIGR00954 447 eaqdngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg...........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlle.reggwda.vqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgi..tllsvshr 639
                 e++d ++ f+n+    P     + ++ +sf+++ G+   i+GP G GK  + R++  ++ v g            + +k  +  +  vPq   m + t+R+ + Y        +r+ + ++Leq     +L + +e  + gwd+ v d    LsgGekqR+++AR +   P f++LDE+tsA+    E  + e++ ++g   t+l ++hr
  MMETSP1061-20121228|4808_1 683 EDEDIVVEFDNVRFHYPtqPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGgavkvngkdvrMVSQKSLRASIGVVPQAASMFNDTIRENVKYG-------RRNATHEELEQAARDAQLLKFIEsMDDGWDTlVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSqrTVLVIAHR 885
                 67788899******9994434567999**********************************99999999887655566677889*******************996.......5666777788887777776666525789*9736688889*******************************999999998888876532266777776 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.1   1.6e-15   1.1e-13     308     498 ..     673     884 ..     653     885 .. 0.75
   2 !   30.5   0.0   4.4e-10   3.1e-08     161     221 ..     827     889 ..     794     915 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 1.6e-15
   TIGR03719 308 aeivippg.erlGdkvievenlskafgdkll...iddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki.Getvklayvdqsrdald...d.....nktvweeisdGldllklgkvevnsr.ayvgrfnfkGadq.qkkvg....elsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaG..cavvish 498
                 + +++p++ e   d v+e++n++ ++  +     ++ +sfk+ +g+   ++Gp GaGk+t+ +l     +   G++k+ G+ v++      r ++    +     n t+ e++  G+   +  + e  +r a + +f  +  d  +  vg    +lsGGe++rv +a+ l ++   +llde t  ld  t ++++eal+ +    +++vi+h
  MMETSP1061-20121228|4808_1 673 DAMILPQTnEEDEDIVVEFDNVRFHYPTQPKtkgLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVnGKDVRMVSQKSLRASIGvvpQaasmfNDTIRENVKYGRRNATHEELEQAARdAQLLKFIESMDDGwDTLVGdrglKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSqrTVLVIAH 884
                 55555554145568999******9998765411267789*************************************9878999998888888776422222223367888999999999998888888884455666544444314455533347*******************************************99865336788888 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 4.4e-10
   TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey..kGtvvavthdryfl 221
                 klsGGek+rv+++r ll++P ++llde t  ld+ + + +++ l +   + tv++++h    +
  MMETSP1061-20121228|4808_1 827 KLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLgsQRTVLVIAHRLGTI 889
                 799999999999999999999999999999999998888898888763356888888865444 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.2     2e-21   1.4e-19       2     201 ..     713     914 ..     712     936 .. 0.80

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 2e-21
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssr.....kgrreiGyvpqrhefawdfpidveqtvlsGragli.Gllrr.pkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvad.gapdqlqd 201
                 ++ +G   +++Gp GaGktt+ r  + +  v  G vkv+gk  r     + r+ iG vpq   +   f   +++ v  Gr +     l + ++ a+     ++++    t + dr + +lsGG++qrv +ar l  +p  +llde  + ld+ ++ ++ e +  l + ++++l+ +h l  ++  +d +++ln  vva+ g+ d+l +
  MMETSP1061-20121228|4808_1 713 KMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRmvsqkSLRASIGVVPQAASM---FNDTIRENVKYGRRNAThEELEQaARDAQLLKFIESMDDGWDTLVGDRGL-KLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGS-QRTVLVIAHRLG-TIRNADNIIVLNHGVVAEeGTHDELLE 914
                 67899999********************************97541111145789******8776...55579999999986554134444045556677778888888888888887.8*********************************************976.57889999**97.578899999999999996366677655 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.3e-20   9.4e-19      14     230 ..     705     910 ..     694     917 .. 0.82

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 1.3e-20
   TIGR01978  14 eiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklellelde..elleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdve 230
                 + Lkg++ ++++G++ ai+Gp G+Gk t+s+     + y v  G +k++g+d+  ++ +   ra + +  qa++       ++ +r+ ++  r++  +eel++++   +l + +e+++      + +R l    sGGek+r  i + +l +P +++LDe+ s lD  +   v e +++l ++ +++l+i+h  rl    + d + vl +G ++++G  +
  MMETSP1061-20121228|4808_1 705 KGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFF--RFYDVLGGAVKVNGKDVRMVSQKS-LRASIGVVPQAASM-----FNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWdtLVGDRGL--KLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQ-RTVLVIAH--RLGTIRNADNIIVLNHGVVAEEGTHD 910
                 569****************************987..5799************98776554.45555556666653.....45667777777777777777888888888888887776544115556666..58********************************************9876.67889999..67788899***************764 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.1   3.5e-20   2.4e-18       1     197 [.     707     907 ..     707     913 .. 0.85

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 3.5e-20
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrm.....vvfqnysllpwltvrenialavda.vlrdlskserreiveehielv..glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakig 197
                 lk+v++++++g   +++g +g gk+t+  l   +     gav+++gk++     + +     vv q  s++   t+ren+     +  +++l+++ r++ + + ie +  g  +    r  +lsgg kqrv+iar+l   p  +llde   ald+lt +++qe l ++    + tvl+++h +  ++  +d +++l  g  a+ g
  MMETSP1061-20121228|4808_1 707 LKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLrasigVVPQAASMFN-DTIRENVKYGRRNaTHEELEQAARDAQLLKFIESMddGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGS--QRTVLVIAHRLG-TIRNADNIIVLNHGVVAEEG 907
                 789*********************************************987766543334447888888775.89*****99865505567788888888888887663356777889999********************************************99965..6799999**996.57789999999999877655 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.2e-19   8.6e-18      20     214 ..     703     892 ..     691     901 .. 0.81

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 1.2e-19
   TIGR02324  20 klpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWsl....aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrel 214
                 k + lk vs++++ G  +a+ G++GaGk t+ +  ++ Y + +g + v+   + v +v  s++   ++R + ig v q    +   + +e v+   ++   e+ e +a+ ++ll+ ++  +  W           sGGekqRv iar l++d   +LLde t++Ld+ +   v e ++++ ++++ l+      ++r++
  MMETSP1061-20121228|4808_1 703 KTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNG--KDVRMV--SQK---SLR-ASIGVVPQAA-SMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESMDDGWDTlvgdRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRNA 892
                 667899**************************************998876..555333..333...345.89******99.555667778888877777777767777778899****99999986222224579****************999**************************9999988855445566655 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.1     5e-18   3.5e-16     246     485 ..     677     907 ..     669     918 .. 0.78

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 5e-18
   TIGR02633 246 ypkepheigdvilevenltaydvvnrkikrvddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrk..rdGivpvlgvGknitlavlkkfakksrideaaelkaieeeikrlk..vktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklkadl 485
                  p+   e +d ++e +n+  + ++++k k ++ vsf +rrG    + G  GaG+t + + +f        g v ++gk+v +  +++++ra i +vp+     +d i  ++  G        ++ a++ ++++aa    + + i+ ++    t   d  + +lsGG++q+  +a++ll +p  ++lde t  +d  +   +   + +l  +  +++v++  l  +   +d ++v+++G +  + 
  MMETSP1061-20121228|4808_1 677 LPQTNEEDEDIVVEFDNVRFHYPTQPKTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRF-YDVLGGAVKVNGKDVRMV-SQKSLRASIGVVPQAASmfNDTIRENVKYG--------RRNATHEELEQAARDAQLLKFIESMDdgWDTLVGDRGL-KLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQR-TVLVIAHRLGTI-RNADNIIVLNHGVVAEEG 907
                 688888999**********************************************876666655.56799*********9985.589******999986541134444444444........23344555555555555555555544113344444443.7**********************************************9886.577888899876.568999999999887665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.4   3.5e-17   2.4e-15     276     517 ..     685     914 ..     673     915 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 3.5e-17
   TIGR03269 276 gediikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdelak.rkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeive 517
                 ++ ++   +v+ +y +      k + +vs++++++    +vG +GaGktt+s+++    +   G v+v    + v m  ++       +  iG++ q  +++   t+ en+         +el +  +    lk +   ++    ++     +ls Ge+ rv++a+ l+k+p  v+lde t ++d +t+ +v+e++   r   ++t ++++h +  +++  d + ++ +G + + G  +e++e
  MMETSP1061-20121228|4808_1 685 EDIVVEFDNVRFHYPTQP--KTKGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVN--GKDVRMVSQK-----SLRASIGVVPQAASMFN-DTIRENVKYGRRNATHEELEQaARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALD--RLGSQRTVLVIAHRLGTIRN-ADNIIVLNHGVVAEEGTHDELLE 914
                 444556777777776644..469999**********************************999987765..4447787766.....34567**********97.689****9998888888886525678899*9999999999999999********************************************985..777899**********9998.58888899999999998888876 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.1   4.4e-18     3e-16      39     254 ..     706     914 ..     700     919 .. 0.86

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 4.4e-18
   TIGR03415  39 gvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelvgl.ae.Wadkkvg...elsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivl 254
                 g +++s+++++G  + ++G +G+Gk+++ r   ++  v  G v+v+ +d    v  +++++l   r   + +v q  a +   t++env +G   +   + e+  r ++ l++++  ++ W +   +    lsGG +qrv +ar +  +   +l+de  sald l  + +q+ l +l +  ++t++ ++h l   ++  ++i +++ G +   gt +e++ 
  MMETSP1061-20121228|4808_1 706 GLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKD----VRMVSQKSL---RA-SIGVVPQA-ASMFNDTIRENVKYGRRNATHEELEQAARDAQLLKFIESmDDgWDTLVGDrglKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGS--QRTVLVIAHRLG-TIRNADNIIVLNHGVVAEEGTHDELLE 914
                 78899***************************************98765....445555555...54.68877765.667789*****************************9975144376543322237********************************************9998..59*********7.6899999************99999876 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.8   0.0   1.6e-17   1.1e-15      14     209 ..     705     910 ..     692     922 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.8 bits;  conditional E-value: 1.6e-17
   TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgre...wtrkdlk.kiGsliesPalyenltarenlkv...rtlllglpes.rieevlkivdlentek.....kkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkyekkid 209
                 + ++ vs+k+++ +  +++Gp GaGk+t+ +l+  +     G ++++g++   +++k l+ +iG++ ++ +++++ t ren+k    +++ ++l+++ r  ++lk ++  +++       +  ++s G kqr+ ia +ll++P +++lde t  ld l    ++e +  + ++  tv++ +h l  +++ ad+i ++++G++  e+  d
  MMETSP1061-20121228|4808_1 705 KGLKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDvrmVSQKSLRaSIGVVPQAASMFND-TIRENVKYgrrNATHEELEQAaRDAQLLKFIESMDDGWdtlvgDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQR-TVLVIAHRLGTIRN-ADNIIVLNHGVVAEEGTHD 910
                 56899*****************************************99862225788887368888888888765.99****974335777888765266789999987776641111145668999*******************************************9986.788889*****986.99999*****998777655 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   5.2e-16   3.6e-14      16     185 ..     707     884 ..     700     895 .. 0.76

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 5.2e-16
   TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgL.......sgledlpva....qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllath 185
                 l+g+sf++  G + +++Gp G+GKtt+ R+         G v++n+k++  + ++  +++  +  +++   + +++En+k+ ++  ++e+  +e+a  +++L       ++  d++v     +Ls G k+R+++ar ll+     +LDE t alD+ + + ++e+l+     + +vl+ +h
  MMETSP1061-20121228|4808_1 707 LKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKYGRRNATHEE--LEQAARDAQLlkfiesmDDGWDTLVGdrglKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRL-GSQRTVLVIAH 884
                 789*********************************************99988777676666666666666779*******988877555..4444444443111100133334555333337*********************************9999999998764.44444444444 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.6      0.18        12     733     813 ..     454     529 ..     441     535 .. 0.76
   2 !   44.9   0.0   6.2e-15   4.3e-13     957    1143 ..     718     908 ..     699     927 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.18
   TIGR01257 733 lflfllafsiatimqsfllstlfskaslaaacsgviyftlylphilcfawqdrltadlkkavsllssvafgfgteylvrfe 813
                 lflfl+      ++ ++++ t++s a la    gvi++++++  +  + +      +l+kav    +    + t+ lv+fe
  MMETSP1061-20121228|4808_1 454 LFLFLIPALAECVVVCIMFVTYYSYAPLA----GVIFYSIWVYVVWTIIYTL-HRKKLRKAVVRSDNEWHDIATDSLVNFE 529
                 8999998888899999999****999987....8999998877766665543.3456777777777777777777777776 PP

  == domain 2    score: 44.9 bits;  conditional E-value: 6.2e-15
   TIGR01257  957 qitaflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfyaqlkg.....rsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgt 1143
                    ta++g  gagktt   ++  +     g+v v gkd+   +  ++r s+g++pq   +f   t+ e + +  +        ++  +aql       d g      +    lsgg ++++s+a +++ d   v+lde ts +d  +  s+ + l +  s rt+++ +h +       d i ++++g +   gt
  MMETSP1061-20121228|4808_1  718 TTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRmVSQKSLRASIGVVPQAASMFND-TIRENVKYGRRNATheeleQAARDAQLLKFIESMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIR-NADNIIVLNHGVVAEEGT 908 
                  679***********************************8357889************99986.8899987754333211111344456665444445889999999**************************************************************997654.467777777776666655 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   2.2e-14   1.5e-12     754     960 ..     683     884 ..     656     902 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 2.2e-14
   TIGR00956 754 esgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkl....dssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveeviklle.lesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiH 960
                 e ++ + e+ ++ ++ + + ++ + L+ v+  ++ G+ tA++G  GAGktt+   L  R    v+  g + vng+++    ++s + siG v q    + + t+re +++  +    +e+ ++ ++    +++k +e +++  d +vG  G  L+   ++r++i+  L   P  ++ lDe ts LD+ t  s+ + l +l  + +++l   H
  MMETSP1061-20121228|4808_1 683 EDEDIVVEFDNVRFHYPTQPKT-KGLKGVSFKMRRGTTTAIVGPTGAGKTTISR-LFFR-FYDVLG-GAVKVNGKDVrmvsQKSLRASIGVVPQAA-SMFNDTIRENVKYGRRNATHEELEQAARDA---QLLKFIEsMDDGWDTLVGDRGLKLSGGEKQRVSIARCLLKDP-AFVLLDEATSALDTLTESSVQEALDRLGSQ-RTVLVIAH 884
                 3344567888888888877655.5589************************865.5555.234444.88889998753334789999***999875.56778********97766666666666665...6666665599********************************.8999****************9999988754.66666555 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       8.2   5.7e+02     144     173 ..      47      76 ..      20     109 .. 0.50
   2 ?   -1.9   0.0       2.8     2e+02     252     343 ..     244     339 ..     220     360 .. 0.60
   3 !   42.9   2.6   7.5e-14   5.2e-12     251     550 ..     598     906 ..     328     909 .. 0.66

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 8.2
   TIGR01194 144 aylaylsvvvflltvvlivlGvaayllars 173
                 a l+y   v+  l+++++++  ++ l+  +
  MMETSP1061-20121228|4808_1  47 AKLTYGGAVLCWLAISIMLFRLSIALIQIA 76 
                 445555555555555555443333333222 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 2.8
   TIGR01194 252 Glllt..laayfavidakaisa..svlvllyikGplvqlvsilpilararvaftrlaelserisepepelelseaenvllld....hdksvdslelkdvr 343
                 Gl+l   +a+++     ++ s   +v+v++ + G l  + s+    ++  v++        +++ p+  + ls ++  ++l+    +dk+ +s  ++ vr
  MMETSP1061-20121228|4808_1 244 GLALAipIATMYYQQYQNTSSEdlMVVVVMALYGVLSTVESVWTPKTQPSVTISE----DGSFEAPKEAPTLSARDIAMVLKpyawPDKTSNSAMMNRVR 339
                 4433311455555444444444114555666678888888877666666665543....34667777777788777766665222357777777776666 PP

  == domain 3    score: 42.9 bits;  conditional E-value: 7.5e-14
   TIGR01194 251 vGllltlaayfavidaka.....isasvlvllyik...Gplvqlvsilpilararvaftrlaelserisepepelelseaenvllldhdksvd.slelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdek...kqasldqattylsrleledkvkvedlnysttt.....dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvke 550
                  G+   ++    +id ++     +  +v vl yi     pl+ l ++   +  a v +   ++ls+ +++ +p+l  + +  +l   ++   d  +e+ +vr+ y+    ++g  l  + +++ +G    ivG  G Gk+t+ +l+  +y    G + ++G+ v   s+   r     v     +f+d +  + k   ++a+ ++ ++  +  +l + ++ +d ++ t       +ls G+++r+++    l++   +llde ++  d        +e l  l  + +t+lvi+h     + ad++i l  G v +e
  MMETSP1061-20121228|4808_1 598 HGCDAGVSECCQSIDMATcpgmeVGDFVAVLTYILqlfRPLNYLGTVYNAIVMAIVDL---TNLSQLLAQ-NPDLVDAPDAMILPQTNEEDEDiVVEFDNVRFHYPTQPKTKG--LKGVSFKMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKDVRMVSQKSLRASIGVVPQAASMFNDTIRENVKygrRNATHEELEQAARDAQLLKFIESMDDGWDTLVgdrglKLSGGEKQRVSIARCLLKDPAFVLLDEATSALDTLT-ESSVQEALDRLGSQ-RTVLVIAHRLGTIRNADNIIVLNHGVVAEE 906
                 4555555556666666652221134577777776512257777777777766655555...555554443.566554443333333333333325799*******99888887..568999*********************************************************************9664322245555666666677777888889999998753223337******************999*****999888655.55567777777655.8************************99876 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   8.9e-11   6.2e-09      16     222 ..     704     909 ..     692     921 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 8.9e-11
   TIGR02323  16 kkgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGkiraaakwlekveida...ari...kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGlt 222
                 +kg++ vsf ++ G   +ivG +G+Gk+t+   +        G v+ + ++    + ++s+      lr+  G+v q +  +  ++      g r  +       + +++a+ l+ +e      + +   +  ++sGG +qr+ iar l+  p +v++ e t  l    ++ +   l +l    + +v++++h l+ +r  a+ ++v+++G v e+G  
  MMETSP1061-20121228|4808_1 704 TKGLKgVSFkMRRGTTTAIVGPTGAGKTTISRLFFRFYDVLGGAVKVNGKD----VRMVSQK----SLRASIGVVPQAASMFNDTIRENVKYGRRNATHE--ELEQAARDAQLLKFIESMDdgwDTLvgdRGLKLSGGEKQRVSIARCLLKDPAFVLLdEATSALdTLTESSVQeALDRLGS--QRTVLVIAHrLGTIRN-ADNIIVLNHGVVAEEGTH 909
                 578888***********************8776666556666677766665....5555543....367899*******999999988888888876664..45666666666666664330113335667789************************999999953333333345566655..5578888999****96.789***********9975 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.12       8.5     619     649 ..     703     733 ..     693     764 .. 0.86
   2 !   25.2   0.0   1.4e-08   9.5e-07     822     903 ..     821     898 ..     795     908 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.12
   TIGR00630 619 kennlkdidvsiplglltvitGvsgsGkstL 649
                 k++ lk ++ +++ g+ t+i G+ g+Gk t+
  MMETSP1061-20121228|4808_1 703 KTKGLKGVSFKMRRGTTTAIVGPTGAGKTTI 733
                 67889***********************986 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 1.4e-08
   TIGR00630 822 lGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidl 903
                 +G     LsGGe qrv +a+ L k     ++ +lDe t  L +     + e l+rl ++  tv+vi h l  i++aD ii l
  MMETSP1061-20121228|4808_1 821 VGDRGLKLSGGEKQRVSIARCLLKD---PAFVLLDEATSALDTLTESSVQEALDRLGSQ-RTVLVIAHRLGTIRNADNIIVL 898
                 5777889***************985...78999**********99999*******9887.79*****************976 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1      0.13       9.2      24      39 ..     718     733 ..     709     734 .. 0.80
   2 !   10.5   0.0   0.00026     0.018    1092    1164 ..     828     896 ..     826     906 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.13
   TIGR02168  24 gitgiVGPNGcGKSNi 39 
                   t+iVGP G GK+ i
  MMETSP1061-20121228|4808_1 718 TTTAIVGPTGAGKTTI 733
                 469**********865 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00026
   TIGR02168 1092 LSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakllkefskktQFIviTHnkgTMeeadqLy 1164
                  LSGGEK  + +a     + +k   f++LDE+ ++LD        + l+++ ++   +vi H+ gT+ +ad+++
  MMETSP1061-20121228|4808_1  828 LSGGEKQRVSIAR---CL-LKDPAFVLLDEATSALDTLTESSVQEALDRLGSQRTVLVIAHRLGTIRNADNII 896 
                  8999999988874...33.44445**********************************************985 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   0.00058      0.04     195     213 ..     714     732 ..     707     742 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00058
   TIGR03499 195 lekggviaLvGptGvGKTT 213
                 +++g + a vGptG GKTT
  MMETSP1061-20121228|4808_1 714 MRRGTTTAIVGPTGAGKTT 732
                 5677799**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        87  (0.0212092); expected 4.1 (0.001)
Passed Fwd filter:                        59  (0.0143832); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              59  [number of targets reported over threshold]
# CPU time: 1.50u 0.21s 00:00:01.71 Elapsed: 00:00:00.88
# Mc/sec: 1426.38
//
Query:       MMETSP1061-20121228|4810_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1201.10
//
Query:       MMETSP1061-20121228|4813_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 600.55
//
Query:       MMETSP1061-20121228|4814_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1141.99
//
Query:       MMETSP1061-20121228|4815_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 1544.76
//
Query:       MMETSP1061-20121228|4823_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 326.83
//
Query:       MMETSP1061-20121228|4822_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|4825_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 316.77
//
Query:       MMETSP1061-20121228|4817_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1891.84
//
Query:       MMETSP1061-20121228|4830_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.26
# Mc/sec: 223.37
//
Query:       MMETSP1061-20121228|4832_1  [L=1120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.6e-123  410.3   5.7   2.8e-122  407.3   4.0    2.3  1  TIGR01069 mutS2: MutS2 family protein
    4.1e-37  125.8   1.8    1.9e-35  120.3   0.0    2.3  2  TIGR01070 mutS1: DNA mismatch repair protein MutS
    0.00061   16.7   0.2      0.032   11.0   0.0    2.2  2  TIGR01288 nodI: nodulation ABC transporter NodI
      0.001   16.5   4.0      0.098   10.0   0.1    2.9  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
  ------ inclusion threshold ------
      0.016   12.5   5.8      0.075   10.3   0.0    3.0  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  407.3   4.0  3.5e-125  2.8e-122     108     761 ..     368    1120 .]     302    1120 .] 0.80

  Alignments for each domain:
  == domain 1    score: 407.3 bits;  conditional E-value: 3.5e-125
   TIGR01069  108 qdleilskllaelitLselendikelidddgkvkdeaseeldeireslkaleeevkkrlekiirrkeaaky........Lsdtivt...irndrfvlpvKsgykekikGivhdtSssGetlYvePqaivelnnklaqlkrkeeeeiekilrqlsekvaeylleLeellkeltelDllqararyakavkaefpeisttkvielkearHPlLkesk...vvpvtlelkse.krviiiTGpNtGGKTvtLKtlgllalmaksgipipake.......sselplFeeifadIgDeQsieqnlSTFsshmkniseiLk.kldensLvllDElgaGTDpdegsaLaislLeklakqnalvlitTHykelkalkyeseevenasvefDeetlsPtYklligvpGrSyAfeiaqrlglpseiiekAkeklgeekeeinkviekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelekeaqealkaakkeveeiirelkekkiekakekkatell..................kklk........eekakvp.qkpknlqadkvGdkvkvesfgq...kgkvvevkkgkkvnvtvgllklkvkeselekink.....appkkkekvpkkvkake................................................keesltldlrGerseeAlsrlekflddallaGyekvkiiHGkGsG.kLrkgVkelLkn.hkkvksyrfaeaneG 761 
                  ++++ + + ++ ++tL+el   +++ +d++g    +  + l+e+r ++++l+  + + l++i++ ++            L +++       ++r vlp+  +y +++ Givhd+S sG+t+YveP +iv   n l+q++++ e e+ ++ r l+e+v ++  +L ++ +++ +lDl+ ar + +  + ++ p +++ +vi l++a+HP+L   k   vv  ++ l+ +  + +++TGpN+GGKTv LK lgllalm++sgipipa         + ++ +F+ ++adIgD Qs++ +lSTFs+hm    e+L  + + n Lvl+DElg+GTDp++g a+a +lLe l+++ ++v itTHy +lk l+  ++++  a ++f     +PtYkll gv+G+SyA+++a+rl lp++++++A++ l +e  ++  +i +lee++    ++  e+e+ +ke+  ++ +++++  +l++r    +++  ++ +++l++  + +e+++ +lk    +++  +k+ e++                  kk +          k+ vp  ++++ q  + Gdk kv ++g+   +  +v + +gk++ v+v  + +  k+ +l+++ +     +p + k +   + +                                                   ++e +t+d+rG ++e+A s++  ++ + l +  + v ++HG GsG  L+++ ++ Lk+ +++vk+++ a   +G
  MMETSP1061-20121228|4832_1  368 VEIPRIVQGIELNTTLQEL---LEDAFDQQGRLSGKTFPVLGELRAKVRTLKADILQTLDSIVQLPSIKSKlamesggpLYSEVASnngSNGGRLVLPIDPKYASQL-GIVHDSSRSGKTVYVEPSEIVGPTNELRQIEHELEAEEARVWRSLTEQVWNNQYDLRKSVQAVAQLDLIVARCKLGQRIRGVIPVVQDEGVISLRDAKHPVLLLRKlekVVGSDISLGADgNQGLVLTGPNAGGKTVILKLLGLLALMSRSGIPIPAAHgdlngeyQPRVDFFNPVLADIGDIQSVDSDLSTFSGHMLVCREVLAlAQTGNALVLMDELGSGTDPNQGVAIAQALLEALMETGCRVAITTHYMQLKQLASSDDRFSVAGMQFVG--NRPTYKLLPGVVGESYALAVAERLELPQSVLDRANDLLDSETRQMGDLIRDLEEQKLVIDQQVLEIEERKKEIAAMEFKMKENKIKLEKRMLTARRDEARKFAKKLEEKEQILEDVLDKLKSDP-SRKLITKSWEDIkfvkrdaineaenvpsvlKKKEraaselkkAVKELVPlAEIRGRQLLNEGDKLKVCKTGNlfgREAIVIKDNGKQIQVKVSGISMMFKHTQLSMETGggdqsKPGNAKANANANAN--AnansttrggraqssrsskavqlalksegrdmrntkqvvekkatssisiRTEGNTVDVRGFNVEDAQSKVTDKISQCLMNRQKTVYVLHGHGSGgVLKSKLRNWLKReKRLVKKWAPADSLDG 1120
                  4455566666666666666...5679**************************************98754430111122244444441224578***********997.9*****************************************************************************************************8877777********9884689********************************975222211135789**************************9999998734477**************************************************************75..69******************************************************99999999999999999888887777777777777666666666666666666666777666666554.3333334444444444444444444466653333455544332333333123344444368******887653322334444447*********************9997774433333444433333..25589***************************************************************************************96379********962578999999887766 PP

>> TIGR01070  mutS1: DNA mismatch repair protein MutS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   2.3e-38   1.9e-35     497     814 ..     497     818 ..     485     841 .. 0.83
   2 !    4.1   0.8    0.0029       2.4     263     341 ..     849     927 ..     816     936 .. 0.78

  Alignments for each domain:
  == domain 1    score: 120.3 bits;  conditional E-value: 2.3e-38
   TIGR01070 497 kvleakekalalekelfeelrekvkkeleaLqeaakalaelDvlaalaevaetlnyvrPefgdeselrireGrhpvvekvlkeefvandleladn.relllitGPnmsGkstylrqtaliallaqiGsfvPaekael........pliDriftriGaaDDLasGrstfmvemeevanilkea.tensLvLlDevGrGtstyDGlalaqaiaealhekiraltLfathYfeLtaLeekleklknvhvaaleengtvvflhkvkeGaasksYGlavaalaglPkeviararekLkeleassskseaplreaqkketeqlslfdeaekeav 814
                 ++ + +++  a e  ++  l e+v ++   L+++ +a+a+lD ++a  +  ++   v P   de  +++r+ +hpv      e+ v  d++l+ + ++ l++tGPn +Gk   l+ + l+al+++ G  +Pa +  l          ++ + + iG    + s  stf   m   + +l  a t n+LvL+De+G Gt    G+a+aqa+ eal e  ++    +thY  L +L+++ ++     ++   +       +k+++G   +sY lava+  +lP++v++ra+++L +  ++  +   +l e qk   +q+ l  e+ k+++
  MMETSP1061-20121228|4832_1 497 ELRQIEHELEAEEARVWRSLTEQVWNNQYDLRKSVQAVAQLDLIVARCKLGQRIRGVIPVVQDEGVISLRDAKHPVLLLRKLEKVVGSDISLGADgNQGLVLTGPNAGGKTVILKLLGLLALMSRSGIPIPAAHGDLngeyqprvDFFNPVLADIGDIQSVDSDLSTFSGHMLVCREVLALAqTGNALVLMDELGSGTDPNQGVAIAQALLEALME-TGCRVAITTHYMQLKQLASSDDRFSVAGMQFVGNRP----TYKLLPGVVGESYALAVAERLELPQSVLDRANDLLDSETRQMGDLIRDL-EEQKLVIDQQVLEIEERKKEI 818
                 55567778888999**************************************************************976667899*******7652678999******************************9876532222111578899****************************987588*******************************.9*****************999998766666555444....46899*****************************987555533332333.333333444444444444443 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0029
   TIGR01070 263 enlrggkentLlsvlDetktamGsrlL.krWlerPlldrekleerqetvealleefalredlrelLkevaDlerlaarva 341
                 ++l   ke+ L  vlD+ k  + ++l+ k+W +   ++r+ ++e  ++  +l ++    ++l++ +ke+  l  + +r  
  MMETSP1061-20121228|4832_1 849 KKLEE-KEQILEDVLDKLKSDPSRKLItKSWEDIKFVKRDAINEAENVPSVLKKKERAASELKKAVKELVPLAEIRGRQL 927
                 33433.88999***********99997578*************99999999999999999********999998888865 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.1    0.0093       7.6      16      53 ..     579     615 ..     576     629 .. 0.83
   2 !   11.0   0.0   3.9e-05     0.032     129     198 ..     657     727 ..     639     753 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0093
   TIGR01288  16 dkvvvndlsftiaagecfgllgpngagkstiarlvlgl 53 
                 +kvv  d+s+     + + l gpn  gk+ i +l+ gl
  MMETSP1061-20121228|4832_1 579 EKVVGSDISLGADGNQGLVLTGPNAGGKTVILKLL-GL 615
                 699999****9999999***********9998875.33 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 3.9e-05
   TIGR01288 129 advrvadlsggmk.rrltlaralindpqllildepttgldpharhliwer.lrsllargktilltthlmeea 198
                  d  ++++sg m   r  la a      l+++de  +g dp     i +  l +l+  g  + +tth+m+  
  MMETSP1061-20121228|4832_1 657 VDSDLSTFSGHMLvCREVLALAQTG-NALVLMDELGSGTDPNQGVAIAQAlLEALMETGCRVAITTHYMQLK 727
                 5778889999985257777777654.57999**********9998887752689***************754 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.64   5.3e+02      55      96 ..     228     270 ..     224     276 .. 0.86
   2 !   10.0   0.1   0.00012     0.098      15      56 ..     577     618 ..     562     636 .. 0.83
   3 !    6.7   0.0    0.0012         1     160     208 ..     682     730 ..     665     735 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.64
   TIGR02982  55 rsvqeGelkvlgk.elkgasekelvqvrrkiGyifqahnlles 96 
                 r++q+G+ k +++ +++ +  ++ ++vr +   +f    ll+s
  MMETSP1061-20121228|4832_1 228 RNAQNGNAKGFKQfRVESLIAETAQEVRERYQAVFEMQRLLDS 270
                 889999999998745999999999***********99999986 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00012
   TIGR02982  15 elrkqvlfdinleiepgeiviltGpsGsGkttlltligglrs 56 
                 +l+k v  di+l  + ++ ++ltGp   Gkt +l l+g l  
  MMETSP1061-20121228|4832_1 577 KLEKVVGSDISLGADGNQGLVLTGPNAGGKTVILKLLGLLAL 618
                 56778889999999999999******************8865 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0012
   TIGR02982 160 PklvladePtaaldkksgrevvellqklareqgttillvthdnrildva 208
                   lvl de  +  d + g ++ + l +   e g+ + + th  ++ ++a
  MMETSP1061-20121228|4832_1 682 NALVLMDELGSGTDPNQGVAIAQALLEALMETGCRVAITTHYMQLKQLA 730
                 469**************************************98887776 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.4      0.01       8.5       9      40 ..     584     614 ..     578     624 .. 0.81
   2 ?   10.3   0.0   9.1e-05     0.075     147     189 ..     683     726 ..     669     727 .. 0.85
   3 ?   -3.7   0.0       1.9   1.5e+03     136     176 ..     763     800 ..     740     804 .. 0.68
   4 ?   -2.9   0.0         1   8.4e+02     122     153 ..     922     953 ..     869     972 .. 0.63

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.01
   TIGR01166   9 kglnlavergevlallGanGaGkstlllhlnG 40 
                 ++++l ++  + l+l G+n  Gk+ +l+ l G
  MMETSP1061-20121228|4832_1 584 SDISLGADGNQGLVLTGPNAGGKTVILKLL-G 614
                 678888999999***********9998866.4 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 9.1e-05
   TIGR01166 147 dvllldePtagldpa.GaeqlleilrklreeGktvvisthdvdl 189
                  ++l+de  +g dp+ G+    ++l+ l e G  v i+th ++l
  MMETSP1061-20121228|4832_1 683 ALVLMDELGSGTDPNqGVAIAQALLEALMETGCRVAITTHYMQL 726
                 46799********953788888999***************8877 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 1.9
   TIGR01166 136 vaiagavalrpdvllldePtagldpaGaeqlleilrklree 176
                 +a+a  + l     +ld     ld++ ++q+ +++r l+e+
  MMETSP1061-20121228|4832_1 763 LAVAERLEL--PQSVLDRANDLLDSE-TRQMGDLIRDLEEQ 800
                 444444443..345688888888876.67899999999886 PP

  == domain 4    score: -2.9 bits;  conditional E-value: 1
   TIGR01166 122 erpthllsgGekkrvaiagavalrpdvlllde 153
                  r  +ll +G+k +v   g +  r  +++ d+
  MMETSP1061-20121228|4832_1 922 IRGRQLLNEGDKLKVCKTGNLFGREAIVIKDN 953
                 34456677777777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.62u 0.14s 00:00:00.76 Elapsed: 00:00:00.61
# Mc/sec: 2423.41
//
Query:       MMETSP1061-20121228|4834_1  [L=1229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.02u 0.15s 00:00:01.17 Elapsed: 00:00:00.97
# Mc/sec: 1672.32
//
Query:       MMETSP1061-20121228|4842_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2389.00
//
Query:       MMETSP1061-20121228|4841_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1743.17
//
Query:       MMETSP1061-20121228|4845_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.56
# Mc/sec: 443.11
//
Query:       MMETSP1061-20121228|4837_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 2522.46
//
Query:       MMETSP1061-20121228|4846_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1952.34
//
Query:       MMETSP1061-20121228|4848_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.35
# Mc/sec: 354.49
//
Query:       MMETSP1061-20121228|4851_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-17   61.6   4.1      2e-16   57.8   0.2    2.5  2  TIGR01158 SUI1_rel: putative translation initiation factor SUI1
    4.3e-06   25.1   0.0    7.5e-06   24.3   0.0    1.4  1  TIGR01160 SUI1_MOF2: translation initiation factor SUI1


Domain annotation for each model (and alignments):
>> TIGR01158  SUI1_rel: putative translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.2    0.0028       5.7      30      72 ..     159     202 ..     132     206 .. 0.78
   2 !   57.8   0.2   9.6e-20     2e-16      19      99 ..     220     299 ..     203     302 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0028
   TIGR01158  30 rrekkGRkGkevtiieGldls.didlkelakeLKskcacGGtvk 72 
                  + +k Rk k  ++ +G + s +  l++ a +L+++  +GGt+ 
  MMETSP1061-20121228|4851_1 159 GVPTKPRKTKASALPKGANSSgNKRLSAKATKLRNQRTAGGTID 202
                 4456778999999999*998725679****************96 PP

  == domain 2    score: 57.8 bits;  conditional E-value: 9.6e-20
   TIGR01158  19 krpkedqvvrirrekkGRkGkevtiieGl.dlsdidlkelakeLKskcacGGtvkdgviElQGdhrekvkelLekkgfkvkl 99 
                 ++   d+ vri + k+    k+vt+++G+ + s  + k+l k+LK++++ GGt+ +gv+ElQG h e v ++L+++g+ +++
  MMETSP1061-20121228|4851_1 220 SAGPADEAVRIATAKR--GSKTVTMVQGMvSASSDERKRLLKKLKARVGGGGTLVEGVLELQGSHAETVLSVLVSEGYAKAR 299
                 3457889999999887..789*******7356778899****************************************9876 PP

>> TIGR01160  SUI1_MOF2: translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.6e-09   7.5e-06      22     102 ..     222     298 ..     201     302 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.6e-09
   TIGR01160  22 agteeyihiriqqrnGrktlttvqGlkkey..dlkkllkalkkelacnGtvvedaelGeviqlqGdqrkkvkeflieeglvkk 102
                 + ++e + i   +r G kt+t vqG+  +   + k+llk+lk  +   Gt+ve      v+ lqG   + v   l++eg +k 
  MMETSP1061-20121228|4851_1 222 GPADEAVRIATAKR-GSKTVTMVQGMVSASsdERKRLLKKLKARVGGGGTLVE-----GVLELQGSHAETVLSVLVSEGYAKA 298
                 45677788877665.99********97654216899****************8.....499***************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 1328.41
//
Query:       MMETSP1061-20121228|4852_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-05   21.5   0.0     0.0068   14.3   0.0    2.7  2  TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase
    0.00014   19.9   0.0    0.00028   18.9   0.0    1.5  1  TIGR00125 cyt_tran_rel: cytidyltransferase-related domain
    0.00015   19.7   0.0    0.00024   19.0   0.0    1.3  1  TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase


Domain annotation for each model (and alignments):
>> TIGR00482  TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.9e-06    0.0068       1      25 [.      38      62 ..      38      74 .. 0.82
   2 !    4.2   0.0     0.006       8.2      94     174 ..     151     252 ..     134     257 .. 0.54

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.9e-06
   TIGR00482  1 lfgGsFdPihlgHlllaeealeald 25
                +f GsF+P+h+gHl l ++ ++ l+
  MMETSP1061-20121228|4852_1 38 VFPGSFNPPHIGHLSLGKASIRTLE 62
                688***********99887766665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.006
   TIGR00482  94 aelaliiGaDalksle..kWk.......dieellek....velviveRpgkelkkallekaikllk............ekrnlvllkepaveiSStkiRkairegk 174
                  ++ ++iG+D+l  +   k +         e+lle+    +++++  R ++   ++ +                      +++++ +e +v++SS++ R+   ++k
  MMETSP1061-20121228|4852_1 151 PRVNFVIGTDTLVRILnpKYYedqspdrMAESLLELnrsgAGFIVGGRLEQGTTSEPK--FVS--GkeelvglpgpvaSMFAIMDESEFRVDLSSSQLRAQQARNK 252
                 4477888888877776343333333332233333322222456666665443332222..221..12345667777666677777777889999999998766665 PP

>> TIGR00125  cyt_tran_rel: cytidyltransferase-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.1e-07   0.00028       2      19 ..      37      54 ..      36      69 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.1e-07
   TIGR00125  2 vvfvGtFdplHlGHlkll 19
                +vf+G+F+p+H GHl+l 
  MMETSP1061-20121228|4852_1 37 IVFPGSFNPPHIGHLSLG 54
                79*************985 PP

>> TIGR01510  coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.8e-07   0.00024       3      29 ..      38      64 ..      36      82 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.8e-07
   TIGR01510  3 vypGsFdPvtlGHldiikralklfdev 29
                v+pGsF+P++ GHl + k +++ ++++
  MMETSP1061-20121228|4852_1 38 VFPGSFNPPHIGHLSLGKASIRTLERL 64
                9***************99999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1533.10
//
Query:       MMETSP1061-20121228|4857_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1061-20121228|4854_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-34  115.5   0.1    8.3e-28   95.5   0.0    2.5  2  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0     2e-31   8.3e-28       1     122 [.     306     434 ..     306     443 .. 0.84
   2 !   17.6   0.1     2e-07   0.00082     111     147 ..     452     488 ..     431     492 .. 0.71

  Alignments for each domain:
  == domain 1    score: 95.5 bits;  conditional E-value: 2e-31
   TIGR00401   1 ekitfalGCfWgveklfrkidgvektkvGylngk...tenPtyeevCsgdtghaevvkveydpkvvsleeLldvffe.vi.dPttan.rqgnDkGtqyrsgiyalsdedekaa.easkerlqesakykk 122
                 e +tfa+GCfWg+e + ++i+gve+t vGy++g       P ye+v +g+tgh e+v v +dp+vv++ +L  +f +  i d t++n   g D+G+ yr+g+y+++ e++ aa +a++ +l ++ +y++
  MMETSP1061-20121228|4854_1 306 ELATFAGGCFWGLELALQRIPGVEHTLVGYTQGDdllEARPNYEQVSAGNTGHCEAVMVYFDPSVVAYADLAAIFLDrCIdDLTNQNgGMGRDVGDHYRTGMYVHTAEQRDAAlRAIRAELSSNPRYTN 434
                 579*****************************86333578***********************************97334255655525799**************99987651677778887777765 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 2e-07
   TIGR00401 111 kerlqesakykkkivteiekaenfyeaeeyhqqylkk 147
                 +++  +  + ++ ++ e+++a+ f+ ae yhq+yl+k
  MMETSP1061-20121228|4854_1 452 NNNRTNRIETQRTVALEVKPARAFWPAEAYHQRYLEK 488
                 2223335677889999********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 2039.83
//
Query:       MMETSP1061-20121228|4860_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 883.75
//
Query:       MMETSP1061-20121228|4855_1  [L=1094]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-47  160.1   0.0    2.6e-47  159.4   0.0    1.2  1  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    6.9e-38  127.5   0.1    1.3e-15   55.5   0.0    4.1  4  TIGR00229 sensory_box: PAS domain S-box protein
    1.1e-36  124.4   0.0    5.4e-34  115.5   0.0    2.4  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    8.2e-20   69.0   0.3    2.4e-19   67.5   0.0    1.8  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
      5e-15   52.8   2.5    7.4e-15   52.2   0.3    2.3  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    3.7e-14   50.1   0.0    5.3e-14   49.5   0.0    1.2  1  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    3.1e-13   46.7   0.0    6.7e-13   45.6   0.0    1.5  1  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
     0.0056   13.0   0.0     0.0099   12.1   0.0    1.3  1  TIGR01052 top6b: DNA topoisomerase VI, B subunit


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.4   0.0     5e-50   2.6e-47     468     809 ..     733    1074 ..     705    1092 .. 0.82

  Alignments for each domain:
  == domain 1    score: 159.4 bits;  conditional E-value: 5e-50
   TIGR02956  468 LAtmSHEiRTPlnGvlGTleLLadtkLtseqqkylqvinrSGesLldiLnDiLDySkiEaGhlsiserafdlskLledvlhlmesraqekgiqLsleidedlpe.vlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvslnddsllfeVeDtGvGiaeeeqetlFkaftqaegrkksgGTGLGLAiskrlveamdgelsveSel..gkGScFafelplergkkaeksatkevidvppa.rvLlvEDNevna.mvaqglleklGhkvtl..aesgksAlecleekaFDlallDinLpDtdGvtLlkqLkeleeakeelkfiavsAhvfnedv.ekylaagFdgflaKPlse 809 
                   A   HE+R Pl G +  +     ++L+++ q+ +  +++    +  i+n +LD  k+E G++ + ++++++++Ll++v++++   ++  g+  s  i+   ++ ++ gD +ri Qvl N+v+NaiK+T  G+++++++ ++++l+f+ eDtG Gi+  eq +lF+ f+q  g     GTGLGLAi+k++ve+++g +  +S +  + G +    + l  +++ e  a +++  +  a  vL+++D ++n  m+a  + +    + t+  a++g++Al    +++FD++++D  + +  Gv    +    +     +++ +v      +d+ +++ +ag d + +KP++ 
  MMETSP1061-20121228|4855_1  733 TAYFAHELRNPL-GAIDSALAAMPNNLPESAQSLVSGMQKCTGFMASIMNNLLDVRKMEEGKMRLARTPLSIRNLLHNVHKMLLPSVR-SGVDFSKFINLTNDNvWVIGDSHRIEQVLTNVVSNAIKYTVAGHIRISIEWEGQHLRFVCEDTGPGIPTSEQPKLFQRFVQRGGAP---GTGLGLAIAKHIVELIGGSIRFDSDPsvKAGTTCIVLMALPPCNPPEIIAPQKTEVIREAiSVLVIDDIKMNRkMLARRIKKGIAPNATIqeAATGEEALLICGRNRFDVMIVDQFMEEAGGVMVGTDVVFAMRR---MRIDSVIVGCSGNDIgAQFFDAGADMVWKKPMPC 1074
                  57789******9.5566666666789*********************************************************99998.78888777665555515569*************************************************************88776...************************8722579999*************999866666655449*********9626777777777766654338999*******************99999999988775433333...3444444444455554577777777777777764 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.5e-06   0.00078       9      60 ..     251     303 ..     245     311 .. 0.87
   2 ?   -0.9   0.0       0.7   3.6e+02      84     112 ..     413     441 ..     399     449 .. 0.72
   3 !   48.9   0.0   2.7e-16   1.4e-13       5     124 ..     462     583 ..     458     585 .. 0.89
   4 !   55.5   0.0   2.5e-18   1.3e-15       7     122 ..     592     708 ..     590     712 .. 0.95

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.5e-06
   TIGR00229   9 ailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedre 60 
                 ++++++++ ++ vd+ G+i ++N+++++++G  ae ++G ++++  +++ +++
  MMETSP1061-20121228|4855_1 251 TLFDTVDAIVFGVDRYGIINEWNHRIAQLTGIDAETAQGLSLSDeTVASVLSQ 303
                 689999*9999******************************999777665555 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.7
   TIGR00229  84 krkdGseiwvevsvspird.aggelgvvgi 112
                  +k+G+ +++ +s+sp +d  g+e +v ++
  MMETSP1061-20121228|4855_1 413 PNKRGDFRHLVASISPRYDsRGKE-VVGAF 441
                 5899**************954444.33333 PP

  == domain 3    score: 48.9 bits;  conditional E-value: 2.7e-16
   TIGR00229   5 eryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrle.gerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivrDIterkeaee 124
                   +r+++++++++i+ +d +G + ++N++ +ei+GY++e++ G  + + +i ++ ++ vr +++ +l+ g+  +  +e ++ ++  +++++ v+++p  d ++ ++gvv i++D+te  +  +
  MMETSP1061-20121228|4855_1 462 NELRKLIDTANAPIFGIDAKGYVNEWNDKTAEITGYRKEDAFGCLLVDtFIFPDIQDSVRCILRDALKhGK-GTSNYELEFLTQAKQIRHLLVNITPQCDmNNAVVGVVLIAQDVTEAVQRDR 583
                 569******************************************99999999999999999999999665.666666667444448******************************999766 PP

  == domain 4    score: 55.5 bits;  conditional E-value: 2.5e-18
   TIGR00229   7 yrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvle.lipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivrDIterkea 122
                 +r+++++++++i+ +d +G++ ++Nr +++++G+ +ee+  + + + +i+   re+v e++e +l g  e+  +e++v++k+G+ + + v+ +  rd + ++ gvvg+++D+te  + 
  MMETSP1061-20121228|4855_1 592 LRQLIDTANAPIFGIDVHGTVNEWNRCMADLTGFGREEAFRKPLVDtFIATSMREKVWEILEAALVGN-ETSNYEVEVTSKSGEPVVLLVNATTRRDpDAKVIGVVGVAQDVTEDRKH 708
                 79****************************************************************65.8999999999**********************************97765 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0013      0.68       3     126 ..     459     593 ..     457     600 .. 0.77
   2 !  115.5   0.0   1.1e-36   5.4e-34     114     322 ..     729     930 ..     585     941 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0013
   TIGR02966   3 aelerlrkalealpdavvvldeeeqiewvNkaaekllglkapkdlgqkisnlirspelke........ylaekkaeep..lelksplneervlevrivpygeee.....lllvarDvtklkrleqmRrdFvanvsHELr 126
                 a++++lrk +++ + +++ +d+++ ++ +N+ + ++ g ++++  g  + + +  p++++         l++ k +++  le  +++++ r+l v+i+p  + +     ++l+a+Dvt+  + +      v+n++ ELr
  MMETSP1061-20121228|4855_1 459 AKANELRKLIDTANAPIFGIDAKGYVNEWNDKTAEITGYRKEDAFGCLLVDTFIFPDIQDsvrcilrdALKHGKGTSNyeLEFLTQAKQIRHLLVNITPQCDMNnavvgVVLIAQDVTEAVQRD----RAVTNMALELR 593
                 577889999999999999999999999999999999999999999999999888888765111111114455444333458888999999********998877789999********987644....44666666666 PP

  == domain 2    score: 115.5 bits;  conditional E-value: 1.1e-36
   TIGR02966 114 RrdFvanvsHELrtPLtvlkGyletleeepeeddeaaekalelmeeqskrmqsLvedLltLsrlEsaakekeeekvdvaelleelkkeaealseek.ehqielev.daavkvkgdeeeLrsalsNLveNAikytpeggeitvrweeeeegaelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSe 322
                  r+  a  +HELr PL  +   l ++   p++ +e+a+  ++ m++ +  m+s++++Ll   ++E+ + + +++++++++ll++++k + +  ++  + +  +++ + +v+v gd+++++++l+N+v+NAikyt +g +i++++e e ++ ++  +DtG+GI++++ p+l+ RF  v++       GtGLGLaI kH++e   ++++ +S+
  MMETSP1061-20121228|4855_1 729 ERNMTAYFAHELRNPLGAIDSALAAM---PNNLPESAQSLVSGMQKCTGFMASIMNNLLDVRKMEEGKMRLARTPLSIRNLLHNVHKMLLPSVRSGvDFSKFINLtNDNVWVIGDSHRIEQVLTNVVSNAIKYTVAG-HIRISIEWEGQHLRFVCEDTGPGIPTSEQPKLFQRF--VQRGG---APGTGLGLAIAKHIVELIGGSIRFDSD 930
                 46788999************999888...56789999*************************************************99876554430333334445889*************************985.79999999****************************..55554...57***************9999999886 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.6       1.1   5.5e+02     116     162 ..     179     225 ..     143     229 .. 0.59
   2 !   67.5   0.0   4.6e-22   2.4e-19     246     446 ..     734     931 ..     723     940 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 1.1
   TIGR01386 116 eaaeaakleksriilasvaallegkkrrvtilvaldikaekelldal 162
                 ea  +a+++ +++++a + a+     ++ t+++    +++  ll+ +
  MMETSP1061-20121228|4855_1 179 EAEAEATTTPNSTTAAAATATATTTTTTTTMTTRRTKATRDSLLEDT 225
                 22123444555555555555666666677787777777777777665 PP

  == domain 2    score: 67.5 bits;  conditional E-value: 4.6e-22
   TIGR01386 246 adlAHelRtPltnLltqtqvaLsreRsgee.yrevlesnleEleRlsrmvedmLfLaradnaqlalereeldlaaelekvaelf.evlae..ergvslkvege.aevegdaqlfrRalsNLlsNAlrytpegstievrverradevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaes.a 446
                 a  AHelR Pl+ +   + +a   + +  e  + ++ + ++    ++ +++++L   + ++++++l+r+ l++ + l++v +++   +    + ++ +++  +   v gd++ +  +l+N++sNA++yt +g  i++++e + ++++ + e+tg+gip  e ++lF RF       +  + gtGLGLaI + ive+ gG+++ +s +
  MMETSP1061-20121228|4855_1 734 AYFAHELRNPLGAI--DSALAA-MPNNLPEsAQSLVSGMQKCTGFMASIMNNLLDVRKMEEGKMRLARTPLSIRNLLHNVHKMLlPSVRSgvDFSKFINLTNDnVWVIGDSHRIEQVLTNVVSNAIKYTVAG-HIRISIEWEGQHLRFVCEDTGPGIPTSEQPKLFQRFVQ-----RGGAPGTGLGLAIAKHIVELIGGSIRFDSdP 931
                 66799999998864..233332.34444440455555555566679999999999*******************99999999884444431155577888776599************************97.69**********************************75.....455689**********************944 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.63   3.2e+02     107     129 ..     332     354 ..     319     363 .. 0.69
   2 !   52.2   0.3   1.4e-17   7.4e-15       6     483 ..     464     932 ..     460     946 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.63
   TIGR02938 107 hflGmhrdvtelheleqrvanqk 129
                  +lG+hr   +  + eq+ ++q+
  MMETSP1061-20121228|4855_1 332 VHLGIHRSSPQHQKQEQQQQQQQ 354
                 57899998877776666555543 PP

  == domain 2    score: 52.2 bits;  conditional E-value: 1.4e-17
   TIGR02938   6 frqtvdqapvaisitdlkanilyanaafseitGyakeeviGknesvlsnrttPpevyqa....lwgslaekk...PwaGkllnrrkdgelylaeltvaPvlneaGetthflGmhrdvtelheleqrvanqkllieavvdaaPvalvlldeqgrvvldnleykklasdlkveepaesllkllre.elaealeele...nqekafsnkelrfdrgggrsarwlsvagrvirieeesadsffaaaekryllltiddiselrkkqedarlsalkallae.eeklealretlsaaihrlqgPlnlisaaisvlerrgddagndavaallqqa...laageealealekviPqsdaeavvpvnlnqvlrdvitllterllaaGi.vvdwqP.aavlPavlGsesrlrslfkalvdnaieamaqkqvkrrelsistaveddlirveiedsGPGiPadlrlkvfePffttkassrkhvGmGlavaqeivakhaGlidvdddyr 483
                 +r+ +d a+  i   d k  +   n+  +eitGy ke+  G    +l +    p++       l ++l + k    ++ ++l + k  +  l ++  +P  +     +  + + +dvte  + ++ v+n  l +  ++d+a + +  +d +g v   n+    l+   ++e   + l++ +    ++e++ e+      ++  sn e+ +   +g +   l v++ + r            a+  +++ + +d++e rk+     l+ +++l a  e k+e+ r+      h l++Pl  i +a+  +     ++ + ++ + +q+    +a+ +++l  ++k+   +++ a +p+ + ++l++v ++l + +  +G+   ++   +    +v+G  +r+  ++ ++v nai+           ++is   e++ +r   ed+GPGiP+  + k f+ f    +    + G+Gla+a++iv   +G i+ d+d++
  MMETSP1061-20121228|4855_1 464 LRKLIDTANAPIFGIDAKGYVNEWNDKTAEITGYRKEDAFG---CLLVDTFIFPDIQDSvrciLRDALKHGKgtsNYELEFLTQAKQIRHLLVNI--TPQCDMNNAVVGVVLIAQDVTEAVQRDRAVTNMALELRQLIDTANAPIFGIDVHGTVNEWNRCMADLTGFGREEAFRKPLVDTFIAtSMREKVWEILeaaLVGNETSNYEVEVTSKSGEP-VVLLVNATTRR---------DPDAKVIGVVGVAQDVTEDRKHAM--ALREMQTLRASqEAKVETERNMTAYFAHELRNPLGAIDSALAAMPNNLPESAQ-SLVSGMQKCtgfMASIMNNLLDVRKMEEGKMRLARTPLSIRNLLHNVHKMLLPSVR-SGVdFSKFINlTNDNVWVIGDSHRIEQVLTNVVSNAIKYTVAG-----HIRISIEWEGQHLRFVCEDTGPGIPTSEQPKLFQRFVQRGG--APGTGLGLAIAKHIVELIGGSIRFDSDPS 932
                 68889999999999999999999999999999999999998...466666665555333000033444443311134445677777777777665..566666666777777889*************************************99888888888877777777666666654330334433333200033445667777777777663.33334333322.........23344557778899****998765..566788887751557888888777789**************999888555544.455555554222777788888889999999999*****************999875.55413333321455679********************976665.....789999*****************************986554..46789*******************99985 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0     1e-16   5.3e-14     450     675 ..     705     940 ..     701     946 .. 0.77

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 1e-16
   TIGR02916 450 arqaasyLakleaseeLaearqfeafnrmsafvvHDlKNlvaqLsLllkNAekHkdnpeFqeDmleTvesavermkkllaqLrekgl......eeekkavdlvdllervies.....kraqkprievsvdkd.levradrerlervlghLvqNAleATeeeGkVkirverekeaavieieDsGqGmseeFirerLFkPFdttKk.aGmGiGvyesreyveelGGeieveStpg..kGtift 675
                  r+ a +L +++   +  ea + e+   m+a+  H+l+N +  +    + A+   + pe  + +++ +++ +  m  +++ L + ++      + +++ +++ +ll++v +      ++  +    +++++d + v  d +r+e+vl+++v NA+  T   G++ i++e e+++++   eD+G G++ +  + +LF+ F    +  G G+G+  ++++ve +GG+i ++S p+   Gt+  
  MMETSP1061-20121228|4855_1 705 DRKHAMALREMQTLRASQEA-KVETERNMTAYFAHELRNPLGAIDS--ALAAMPNNLPESAQSLVSGMQKCTGFMASIMNNLLDVRKmeegkmRLARTPLSIRNLLHNVHKMllpsvRSGVDFSKFINLTNDnVWVIGDSHRIEQVLTNVVSNAIKYTV-AGHIRISIEWEGQHLRFVCEDTGPGIPTSE-QPKLFQRFVQRGGaPGTGLGLAIAKHIVELIGGSIRFDSDPSvkAGTTCI 940
                 57777778888777766665.5899999***********7765543..336666777999999999999999999998888755444310001445556889999999987522222455556667888555599*********************996.7**************************998.9*******9988868************************98632455443 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.3e-15   6.7e-13     486     688 ..     730     928 ..     727     944 .. 0.89

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.3e-15
   TIGR03785 486 enlssrLsHElrTPvAvVrsSLenLelqklekekqkYleRAqegverlsaiLnsmseAtRlEqalqsaekedfdlsevlselvqgY.qqlyeeqrfe..leieeedlvlrgspellaQllDKlvdNaieFskedglIevslkekkkealltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeikae 688
                 +n+++  +HElr P+  + s L  + + +l + +q+ +   q+ +  + +i+n++ +  ++E+      + ++ + ++l ++ +     + + ++f+  ++++++++ + g +  + Q+l  +v+Nai ++ + g I++s++ ++++     e  Gp +P   + klF+ +v  R       p  GlGL I++ i++  +g+i+  
  MMETSP1061-20121228|4855_1 730 RNMTAYFAHELRNPLGAIDSALAAMPN-NLPESAQSLVSGMQKCTGFMASIMNNLLDVRKMEEGKMRLARTPLSIRNLLHNVHKMLlPSVRSGVDFSkfINLTNDNVWVIGDSHRIEQVLTNVVSNAIKYTVA-GHIRISIEWEGQHLRFVCEDTGPGIPTSEQPKLFQRFVQ-R----GGAPGTGLGLAIAKHIVELIGGSIRFD 928
                 6999*******************9875.67888999********************************************99887514566778886446888999999*********************986.679**********************************94.5....344557****************99876 PP

>> TIGR01052  top6b: DNA topoisomerase VI, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.9e-05    0.0099      34      88 ..     845     898 ..     832     903 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.9e-05
   TIGR01052  34 kelvtnsldaceeaGilPdikveieklgkdhykvavednGpGiPeeyipkvfgkl 88 
                 ++++tn +  + +  +  +i+++ie  g +h + + ed GpGiP+   pk f ++
  MMETSP1061-20121228|4855_1 845 EQVLTNVVSNAIKYTVAGHIRISIEWEG-QHLRFVCEDTGPGIPTSEQPKLFQRF 898
                 34444555555555677799****8755.5*********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1094 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.13s 00:00:00.74 Elapsed: 00:00:00.44
# Mc/sec: 3281.73
//
Query:       MMETSP1061-20121228|4861_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 821.27
//
Query:       MMETSP1061-20121228|4859_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 591.68
//
Query:       MMETSP1061-20121228|4862_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   11.9   0.1       0.04   10.2   0.0    1.7  2  TIGR01255 pyr_form_ly_1: formate acetyltransferase
      0.055   10.6   0.1        2.8    5.0   0.1    2.2  2  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA


Domain annotation for each model (and alignments):
>> TIGR01255  pyr_form_ly_1: formate acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   1.9e-05      0.04      97     136 ..      70     109 ..      58     123 .. 0.86
   2 ?   -1.6   0.0     0.069   1.4e+02     481     495 ..     191     205 ..     159     216 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.9e-05
   TIGR01255  97 ralipfGGirvaekslkeyglevdpelkdilteyrktvnq 136
                 r + p+    ++e +l e+ +ev++ l+ il+  r+++n 
  MMETSP1061-20121228|4862_1  70 RSMAPRETPEMIETALSEHKFEVEKRLRTILSSSRQSHNS 109
                 6788999999****************************96 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.069
   TIGR01255 481 iihymhdkyayeasq 495
                   h mh kyay as+
  MMETSP1061-20121228|4862_1 191 SSHSMHHKYAYAASR 205
                 5699*******9986 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1    0.0014       2.8       6      43 ..     169     206 ..     166     222 .. 0.88
   2 ?    3.1   0.0     0.005        10      91     136 ..     381     426 ..     367     432 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0014
   TIGR03235   6 attpvdpevaevvrpflleefGnassrthefgakakka 43 
                  t +++++v e++++   + fG + s +h+++ +a + 
  MMETSP1061-20121228|4862_1 169 NTGNINNNVEEIMNRNNEKLFGSSHSMHHKYAYAASRQ 206
                 58899***************************999875 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.005
   TIGR03235  91 iitsaiehkavlepikfLeenGftvtylevdesGridveelkeair 136
                 +it     ++v+e++  L++ G   +  +v +sG i++++l++ i+
  MMETSP1061-20121228|4862_1 381 LITRVHVVSSVIETCYKLRTFGIPPEDFPVTSSGSIKTKKLMKWIK 426
                 5555555689********************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 2345.63
//
Query:       MMETSP1061-20121228|4866_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          4    5.0   7.9        4.2    4.9   5.0    1.6  1  TIGR03656 IsdC: heme uptake protein IsdC


Domain annotation for each model (and alignments):
>> TIGR03656  IsdC: heme uptake protein IsdC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.0     0.001       4.2     152     193 ..      46      86 ..      27     124 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.001
   TIGR03656 152 akddekskeekdkvenktttkesksessnkekvdnPktgdet 193
                 +  +e+s +e++ +e++t+ + s+++s + ek++ P  + e 
  MMETSP1061-20121228|4866_1  46 SG-SEDSVSEDSGSEDGTSEDSSDEDSVDDEKTTAPSGTTEQ 86 
                 22.3334555666779999999999*********99865543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 698.44
//
Query:       MMETSP1061-20121228|4856_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1078.87
//
Query:       MMETSP1061-20121228|4865_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00042   16.0  10.4     0.0007   15.2   7.2    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00083   14.9   8.8     0.0014   14.2   6.1    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        1.6    5.4  12.2        6.1    3.5   7.8    1.9  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   7.2   5.1e-07    0.0007     736     874 ..     511     648 ..     503     659 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.1e-07
   TIGR02168 736 elerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleele 874
                  ++ l ++ +++  + + l+++++++++e   +++e+e+ ++ ++  +++  +le   ++  +el+ lr++++ l++++++l ++  +   + e+l++e++  + ++e  ++++++++++ie l++e +++e++ +ele
  MMETSP1061-20121228|4865_1 511 TVQDLYQHLQRCMYQNSLLRQDINKMNNEVLVQQSEIEKVRAIAAGERQKAHDLEVLRKESATELARLRTEIQTLRSAASQLPSSTGS-DPTTERLKRELQIYKSRAEFYKKETASKKAQIEVLQHERTRFEDRVQELE 648
                 4566667777777888888888888888888888888888877777778888888888888888888888888888888888877775.55668888888888888888888888888888888888888888777765 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   6.1     1e-06    0.0014     316     455 ..     510     648 ..     500     659 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1e-06
   TIGR02169 316 eeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkae 455
                 + ++d+ ++l++   + + l+++i+++++e+  ++ e ek+ +  + ++++ ++l+   +e ++e a+lr e + l+ + ++l +   +   +++rl+ el+  +++ +  k+e ++++++i+ l++e++  ++++++ e
  MMETSP1061-20121228|4865_1 510 KTVQDLYQHLQRCMYQNSLLRQDINKMNNEVLVQQSEIEKVRAIAAGERQKAHDLEVLRKESATELARLRTEIQTLRSAASQLPSSTGSDP-TTERLKRELQIYKSRAEFYKKETASKKAQIEVLQHERTRFEDRVQELE 648
                 4566666777777777777777777777777777777777777777777777777777777777777777777777777777777777666.667777777777777777777777777777777777777777777655 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   7.8    0.0045       6.1      80     169 ..     530     647 ..     526     656 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0045
   TIGR01843  80 eadaaelesqvlaleaevarlraeanseea..........................iefpdillsae.d.avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqal 169
                 ++d+++++++vl ++ e++++ra+a++e +                           +++++l s++      e +k++ ++++sr++ ++++ +s +aqi+ l+ e+ + + ++q+l
  MMETSP1061-20121228|4865_1 530 RQDINKMNNEVLVQQSEIEKVRAIAAGERQkahdlevlrkesatelarlrteiqtlRSAASQLPSSTgSdPTTERLKRELQIYKSRAEFYKKETASKKAQIEVLQHERTRFEDRVQEL 647
                 6778888888888888888888888887775555555555555555555555444422232333333223666667777777777777777777777777777777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.44
# Mc/sec: 1985.84
//
Query:       MMETSP1061-20121228|4864_1  [L=727]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (727 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 2822.24
//
Query:       MMETSP1061-20121228|4871_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 562.69
//
Query:       MMETSP1061-20121228|4872_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   12.1   0.1      0.069   11.1   0.0    1.5  1  TIGR00638 Mop: molybdenum-pterin binding domain


Domain annotation for each model (and alignments):
>> TIGR00638  Mop: molybdenum-pterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.7e-05     0.069      42      68 ..      58      84 ..      44      86 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.7e-05
   TIGR00638 42 eSaaeLglkeGkevlaliKassVllae 68
                 S++ +gl  Gk+  a+iKa +V la 
  MMETSP1061-20121228|4872_1 58 GSVELMGLTLGKWGNAVIKAHQVALAS 84
                69999******************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1665.09
//
Query:       MMETSP1061-20121228|4876_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.23
# Mc/sec: 315.63
//
Query:       MMETSP1061-20121228|4878_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 967.92
//
Query:       MMETSP1061-20121228|4886_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 576.58
//
Query:       MMETSP1061-20121228|4881_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1031.91
//
Query:       MMETSP1061-20121228|4887_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1219.33
//
Query:       MMETSP1061-20121228|4884_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       581  (0.141638); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.13s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 1731.21
//
Query:       MMETSP1061-20121228|4889_1  [L=709]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052    9.7  24.6      0.095    8.8  16.1    1.8  2  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.014        56     251     332 ..     175     267 ..     165     302 .. 0.75
   2 ?    8.8  16.1   2.3e-05     0.095     121     383 ..     331     593 ..     325     672 .. 0.50

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.014
   TIGR00934 251 srdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssiekns...........qqnltrlaktksfdd 332
                  rd++ e+   s ++++++ +a+a+ + k +++ ++ a+++  +s  r+i+  i  + +t   e++              +++  +kt++ dd
  MMETSP1061-20121228|4889_1 175 IRDVKTENFMLSPAKAKANANANANAKAKTQKSATTTATTTALASRIRLIDLAIATQWTTMYCETEDggslvgtplyaSLHVHEGKKTSFRDD 267
                 478889999999999998999999999998888888888888889999999999888888777777666677777755334444444444444 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 2.3e-05
   TIGR00934 121 hsllafvRlYWFeryfdgirdssrrnf.klrrtktllereledrtetkvrtrtq..vslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsim......mlqekheatakirdk...iseanslaaesdees.......ses.rriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkre 383
                 +++l  vR Y F++  d    s+   + ++  +kt+l+ + +++++tk++++ +  + ++  ++k   +++   + ++ + +++++++ ++++ed +++ ++ +++  +r+  +k++  +++++ e+ +++ ++    +++ ++s         +q+++e + +  ++    ++a ++a+ sde++       s+s  r +++ +r ++ +++ + + q +tr         s++++++ ++ti       +++ ++++++q+ + k++k+++++k++ ++++
  MMETSP1061-20121228|4889_1 331 SNYLRIVRGYAFKKVPDYEELSAILSKlTVPALKTSLKSKTKANAKTKTKAKAKacTGVASAASKCGATKQSASTKRIRNSNSNSNSEDEDEDEDEDEEYASPPKVA-RRSTRKKNNGADSEMTIEDLTNEEDQA---LNENDQSFDetvyadAHQDMDEMDWEYTNHtnhANSASASASASDENEqpgpveeSDSnPRTRSRARRDPASKTRTQRVAQRVTR---------SRKATISTQETI------VIDSENSEQEQQEQH-KQHKQHQQHKQQQQQQQ 593
                 45778888888877544433333333324455555666555555555555553344566666777777777777777777777777777777777777777777666.777777777777788888776654432...2222233220000002333333333333332222222222333333322233322111112222222222221111111222222.........222223322222......222222222111111.11222222221111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       528  (0.128718); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 2228.10
//
Query:       MMETSP1061-20121228|4891_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 898.54
//
Query:       MMETSP1061-20121228|4892_1  [L=744]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.50
# Mc/sec: 1964.00
//
Query:       MMETSP1061-20121228|4888_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-06   23.1   1.6       0.17    7.5   0.0    3.8  4  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00019   18.0   0.0    0.00091   15.8   0.0    2.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
      0.001   16.5   2.1       0.21    8.9   0.0    3.4  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0016   16.0   7.2       0.25    8.9   0.0    4.6  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0094   14.4   7.9      0.046   12.2   0.1    4.5  5  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00021      0.17     585     633 ..     372     421 ..     357     433 .. 0.76
   2 !    2.2   0.0    0.0083       6.8     741     795 ..     492     547 ..     472     555 .. 0.56
   3 !    5.2   0.0   0.00098      0.81     452     532 ..     508     590 ..     500     599 .. 0.67
   4 !    6.8   0.0   0.00034      0.28      51      80 ..     601     630 ..     596     637 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00021
   TIGR02917 585 kalaile.eaadlapdspellellgraqlaakdlkkavesfkkllelqpd 633
                 +al i e ++ ++ p ++++++ +g aq + +d+++a++s++k le+q +
  MMETSP1061-20121228|4888_1 372 RALRIQEaSVGQVDPTTANMYQSIGLAQAKYGDFDQALRSLQKCLEIQEQ 421
                 55555541344567888889999999999999999999999999888765 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.0083
   TIGR02917 741 kLaeallasgntaeAaktleawLkehpkdav.lrtalAelylaekdedkAakhYqt 795
                 kL+  +       e+   le+ L e+  d++ +  +l++++ ++ d + A ++Y  
  MMETSP1061-20121228|4888_1 492 KLGDFQGSLAAYRESLSILESLLGENHADVAiAHGYLGNVLHEQDDFQGAMEEYSF 547
                 55555555555555555555555444333330344555555555555555555543 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.00098
   TIGR02917 452 aaakkle.kkqpdnaslynllgaiylgkkdlakAreafekALkiepdff.pAlanLArldlqekniddAkqrfekvlaidpkn 532
                 +++++l+ ++  d a  + +lg ++  + d ++A e++  AL i  + f ++ +  A+ + q +++   +q ++++ a++ k 
  MMETSP1061-20121228|4888_1 508 SILESLLgENHADVAIAHGYLGNVLHEQDDFQGAMEEYSFALAIREEVFgKSHVTTAQSHTQIGQLLTDVQDYDEAEARHRKA 590
                 55555542556677777888888888888888888888888888776553677777777777777766666666655554444 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.00034
   TIGR02917  51 kdpndaeaRflLgkiyleqGdaaaAekeLr 80 
                 ++p+ ae+ + +g +++++G+++aA ke +
  MMETSP1061-20121228|4888_1 601 ESPESAESHYWIGYVLNQKGNYEAALKEHD 630
                 789************************976 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.1e-06   0.00091     325     537 ..     383     593 ..     345     632 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-06
   TIGR00990 325 elkekealalelrGifkflkgkheealadlsksieldPrltqsyikrasi.nlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldp.dfifsyiqlavlqyklgsiassealfrrakkkfp.....eaPdv...ynyyaellldknkfdealekfdlaielekelkpis.vnvlPlinkalalfrtkedfieaekllekalil 537
                 ++++  a  ++  G+ +   g+ ++al  l+k++e++ ++   y     i    lg+           +++  +  ++  hr+ l    +++++a    +k+   d  d   sy  ++    klg ++ s a +r++   ++     +  dv   + y +++l ++++f+ a+e++  a+++ +e+ + s v  +    +   l+  ++d+ eae    kal++
  MMETSP1061-20121228|4888_1 383 QVDPTTANMYQSIGLAQAKYGDFDQALRSLQKCLEIQEQVFGQYSPEVAItRSHLGH---------TIVERGDDGDELLEHRGAL----QQYKKALVIREKCLGEDHlDVAGSYQNIGQSLCKLGDFQGSLAAYRESLSILEsllgeNHADVaiaHGYLGNVLHEQDDFQGAMEEYSFALAIREEVFGKShVTTAQSHTQIGQLLTDVQDYDEAEARHRKALRI 593
                 555555666666666666666666666666666666666655554332220222222.........2334444445566666654....45555555555555444325556777778888888888888888888775443111113344422268*************************9999776426677777777788889**************987 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00026      0.21     132     167 ..     386     421 ..     361     436 .. 0.88
   2 ?   -1.9   0.0      0.52   4.3e+02     134     161 ..     479     506 ..     457     512 .. 0.73
   3 !    5.0   0.2     0.004       3.3      29      95 ..     562     594 ..     511     637 .. 0.50

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00026
   TIGR02521 132 eqparsyeNaglcalkagdtekaekyltralkidpk 167
                 +++a+ y+++gl ++k gd+++a  +l++ l+i+++
  MMETSP1061-20121228|4888_1 386 PTTANMYQSIGLAQAKYGDFDQALRSLQKCLEIQEQ 421
                 688999*************************99876 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.52
   TIGR02521 134 parsyeNaglcalkagdtekaekyltra 161
                  a sy+N+g  + k+gd++   ++ +++
  MMETSP1061-20121228|4888_1 479 VAGSYQNIGQSLCKLGDFQGSLAAYRES 506
                 5678888888888888877665555555 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.004
   TIGR02521  29 kaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlk 95 
                 +                                   a+ +  ++ ++ ++++ ++Ae++ rkAl++ 
  MMETSP1061-20121228|4888_1 562 T----------------------------------TAQSHTQIGQLLTDVQDYDEAEARHRKALRIR 594
                 2..................................23334444444444445555555555555442 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.3      0.15   1.2e+02       8      29 ..     141     162 ..     134     166 .. 0.78
   2 ?    2.6   0.1     0.027        22      65     117 ..     360     420 ..     357     428 .. 0.60
   3 ?   -3.8   0.0       2.6   2.1e+03      67      82 ..     453     468 ..     451     473 .. 0.75
   4 !    8.9   0.0    0.0003      0.25      34     102 ..     503     573 ..     499     590 .. 0.78
   5 ?    3.9   0.0      0.01       8.6      50      82 ..     606     636 ..     600     644 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.15
   TIGR02552   8 ksllgldeeqleaiYalAYnly 29 
                 +++ g ++++l ++Y++AY+  
  MMETSP1061-20121228|4888_1 141 QDADGEQAQNLGEVYEAAYQIK 162
                 6667778899*********975 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.027
   TIGR02552  65 lkeyeeAiaaYalaaaldld........dprpvyhaaecllalgekeeAlkaLklaieiae 117
                 l+++e A+++Y++a+ +++         +++ +  ++    + g+  +Al+ L+ ++ei+e
  MMETSP1061-20121228|4888_1 360 LEHHEIALHIYSRALRIQEAsvgqvdptTANMYQSIGLAQAKYGDFDQALRSLQKCLEIQE 420
                 5677788888888876654311111000444555556666677777777777777777765 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 2.6
   TIGR02552  67 eyeeAiaaYalaaald 82 
                 e+ +A+++Y+ a+ ++
  MMETSP1061-20121228|4888_1 453 EHRGALQQYKKALVIR 468
                 5677888888887776 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.0003
   TIGR02552  34 yeeAeklFqlLaaldpteakywlg.LaaclqalkeyeeAiaaYalaaald.lddprpvyhaaecllalgek 102
                 y+e++ + + L   ++++   + g L+ +l++++++++A++ Y+ a+a++ +   + ++ +a++++++g+ 
  MMETSP1061-20121228|4888_1 503 YRESLSILESLLGENHADVAIAHGyLGNVLHEQDDFQGAMEEYSFALAIReEVFGKSHVTTAQSHTQIGQL 573
                 55556666666666666666555559***********************9444578999999999999875 PP

  == domain 5    score: 3.9 bits;  conditional E-value: 0.01
   TIGR02552  50 teakywlgLaaclqalkeyeeAiaaYalaaald 82 
                 +e++yw+  + +l ++++ye A++  ++a++++
  MMETSP1061-20121228|4888_1 606 AESHYWI--GYVLNQKGNYEAALKEHDIAYTIR 636
                 4566665..567888888888888888887775 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1         2   1.7e+03      28      60 ..     134     166 ..     132     175 .. 0.63
   2 ?   -1.3   0.0      0.86     7e+02       8      27 ..     395     414 ..     385     421 .. 0.54
   3 ?   -2.0   0.0       1.4   1.1e+03      45      66 ..     486     507 ..     480     512 .. 0.81
   4 ?    2.8   0.1     0.044        36      39      66 ..     522     549 ..     516     589 .. 0.68
   5 !   12.2   0.1   5.7e-05     0.046      35      63 ..     602     630 ..     599     638 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2
   TIGR02795  28 FlkkYPkstlapnAqYwlGealyakkkykdAak 60 
                 F +kY +++  ++    lGe++ a+ ++k++ +
  MMETSP1061-20121228|4888_1 134 FKTKYQQQDADGEQAQNLGEVYEAAYQIKQSLR 166
                 566666666666666666777766666666655 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.86
   TIGR02795   8 aallvlkegdYakAeqaFka 27 
                  +l + k gd+++A +++++
  MMETSP1061-20121228|4888_1 395 IGLAQAKYGDFDQALRSLQK 414
                 33344445555555554443 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1.4
   TIGR02795  45 lGealyakkkykdAakaflevv 66 
                 +G++l + ++++ + +a++e +
  MMETSP1061-20121228|4888_1 486 IGQSLCKLGDFQGSLAAYRESL 507
                 6888999999999998888765 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.044
   TIGR02795  39 pnAqYwlGealyakkkykdAakaflevv 66 
                 + A+ +lG++l ++ +++ A ++++ ++
  MMETSP1061-20121228|4888_1 522 AIAHGYLGNVLHEQDDFQGAMEEYSFAL 549
                 5588889999999999999999886544 PP

  == domain 5    score: 12.2 bits;  conditional E-value: 5.7e-05
   TIGR02795  35 stlapnAqYwlGealyakkkykdAakafl 63 
                 s+ +++++Yw+G +l +k++y++A k+  
  MMETSP1061-20121228|4888_1 602 SPESAESHYWIGYVLNQKGNYEAALKEHD 630
                 77889*******************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.30
# Mc/sec: 2921.36
//
Query:       MMETSP1061-20121228|4894_1  [L=1029]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1029 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.14s 00:00:00.78 Elapsed: 00:00:00.43
# Mc/sec: 3158.53
//
Query:       MMETSP1061-20121228|4895_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-08   30.3   0.0    7.4e-07   25.2   0.0    2.0  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.3e-06   25.8   0.0      2e-06   25.3   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    0.00083   16.2   0.2     0.0037   14.1   0.0    1.8  2  TIGR02906 spore_CotS: spore coat protein, CotS family
     0.0092   13.7   0.1      0.014   13.1   0.1    1.2  1  TIGR02172 Fb_sc_TIGR02172: fibrobacter succinogenes paralogous family TIGR02172
  ------ inclusion threshold ------
      0.041   10.8   0.6       0.14    9.1   0.0    2.0  2  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     9e-10   7.4e-07      51     137 ..      46     128 ..      27     140 .. 0.87
   2 !    3.1   0.0    0.0042       3.4     150     187 ..     179     218 ..     166     229 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 9e-10
   TIGR03903  51 dgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgved 137
                 +  l+++  y +G  l e+L  +   +  e    m q+L++la   + G+ hRD+  +n++v + +    a ++D G+  L+p +++
  MMETSP1061-20121228|4895_1  46 ERNLYSIMPYCDGGELFERLDLNDRFSEDEARYWMDQILNGLANLQKVGICHRDMSLENLLVHQDG----ALIIDMGMCLLVPYFDE 128
                 447999********************************************************9876....89*********999887 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0042
   TIGR03903 150 lGsPaYaaPeqLRgepvta..ksDlYaWGLivleCLtGkr 187
                  G   Y +Pe  R+e +    + D++a G+i++  LtG +
  MMETSP1061-20121228|4895_1 179 CGKWIYMSPEVYRNEEPFDgfAVDMWAAGVILFLMLTGFP 218
                 57778*********998643389**************965 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.4e-09     2e-06      51     136 ..      28     120 ..      23     134 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2.4e-09
   TIGR03724  51 lseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivkddklyliDfGLg 136
                  s+++++ +  P+ +  d+++   +m y +g +l + l+ +           + ++ + +++l k gi+h D+  +N++v++d +++iD+G+ 
  MMETSP1061-20121228|4895_1  28 FSAMRNTNIMMPLDLLSDERNLYSIMPYCDGGELFERLDLNDRfsedearYWMDQILNGLANLQKVGICHRDMSLENLLVHQDGALIIDMGMC 120
                 678889999999999999999999999999988776666544455565577899999**********************************96 PP

>> TIGR02906  spore_CotS: spore coat protein, CotS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.13   1.1e+02     179     204 ..       8      33 ..       2      42 .. 0.66
   2 !   14.1   0.0   4.5e-06    0.0037     186     215 ..      91     120 ..      87     124 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.13
   TIGR02906 179 elvkeekkkrglcHqDyayhNillkd 204
                 + ++++ ++ + cH D++ +   + +
  MMETSP1061-20121228|4895_1   8 QQQQQQAEESNTCHADIGRSFSAMRN 33 
                 445555666667****9987666555 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 4.5e-06
   TIGR02906 186 kkrglcHqDyayhNillkdnevyviDlDsv 215
                 +k g+cH+D++ +N+l++++++ +iD+  +
  MMETSP1061-20121228|4895_1  91 QKVGICHRDMSLENLLVHQDGALIIDMGMC 120
                 7899**********************9887 PP

>> TIGR02172  Fb_sc_TIGR02172: fibrobacter succinogenes paralogous family TIGR02172
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   1.7e-05     0.014     124     211 ..      62     157 ..      51     163 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.7e-05
   TIGR02172 124 irklieekkfvpddykeklralieevpdtk..tClhgDlqignlivdgkrtywiDlGeFgyGsplfD.....lgllfmltnvldekk..lqaifhmn 211
                 +++l  + +f  d+ +  + ++++ + + +  +  h D+ + nl+v +++++ iD+G      p fD     l+  f+  n+   +    ++ +hmn
  MMETSP1061-20121228|4895_1  62 FERLDLNDRFSEDEARYWMDQILNGLANLQkvGICHRDMSLENLLVHQDGALIIDMGMC-LLVPYFDedhsgLAASFNNMNMNGGQTvlQEQQYHMN 157
                 555555666667777766666666555443113459*********************75.3455565444447777777777766664234567776 PP

>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.22   1.8e+02     132     154 ..       3      25 ..       1      28 [. 0.71
   2 ?    9.1   0.0   0.00017      0.14     142     169 ..      89     116 ..      69     119 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.22
   TIGR02721 132 lkqfrkapepaplklallHlDvh 154
                 ++q +++++++  +   +H D++
  MMETSP1061-20121228|4895_1   3 QQQQQQQQQQQAEESNTCHADIG 25 
                 45566666777777889999998 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00017
   TIGR02721 142 aplklallHlDvhaeNlvkteqGlklID 169
                 +  k+  +H D+  eNl++ ++G  +ID
  MMETSP1061-20121228|4895_1  89 NLQKVGICHRDMSLENLLVHQDGALIID 116
                 5567889********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1407.88
//
Query:       MMETSP1061-20121228|4896_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 984.84
//
Query:       MMETSP1061-20121228|4898_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 439.96
//
Query:       MMETSP1061-20121228|4899_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 728.07
//
Query:       MMETSP1061-20121228|4900_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1678.90
//
Query:       MMETSP1061-20121228|4897_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.85    7.9   7.0        0.4    9.0   2.3    2.3  3  TIGR04102 SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family


Domain annotation for each model (and alignments):
>> TIGR04102  SWIM_PBPRA1643: SWIM/SEC-C metal-binding motif protein, PBPRA1643 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.14   5.9e+02      27      42 ..     139     154 ..     124     178 .. 0.70
   2 ?   -2.2   0.0       0.3   1.2e+03      69      74 ..     228     233 ..     202     271 .. 0.55
   3 ?    9.0   2.3   9.6e-05       0.4      33      80 ..     271     318 ..     237     332 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.14
   TIGR04102  27 lGsekaPlelvvqsee 42 
                     ++Pl+++v++++
  MMETSP1061-20121228|4897_1 139 ESGIQKPLSISVDTRH 154
                 3334678888888765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.3
   TIGR04102  69 niaeLe 74 
                  ++++e
  MMETSP1061-20121228|4897_1 228 SVVSIE 233
                 333332 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 9.6e-05
   TIGR04102  33 Plelvvqseerkaeveallaehelfaei.evdadkeeniaeLeallnkp 80 
                  ++   +s+er +e+e+l++e +l a+i e+ a+ ee+i+++ea  nk 
  MMETSP1061-20121228|4897_1 271 NVTTPAKSTERDEEIERLVEE-KLQAKIaELTASFEEKIRQMEAKTNKI 318
                 456667899********9977.5777774799**********9987774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       381  (0.0928815); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1706.43
//
Query:       MMETSP1061-20121228|4905_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 276.55
//
Query:       MMETSP1061-20121228|4904_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1296.32
//
Query:       MMETSP1061-20121228|4908_1  [L=830]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-38  129.9   0.0    3.6e-38  129.2   0.0    1.2  1  TIGR00417 speE: spermidine synthase
    1.2e-22   78.2   0.0    2.3e-22   77.3   0.0    1.4  1  TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.0   1.8e-41   3.6e-38      40     233 ..     368     593 ..     361     605 .. 0.78

  Alignments for each domain:
  == domain 1    score: 129.2 bits;  conditional E-value: 1.8e-41
   TIGR00417  40 kvlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpkls.ga.........lddervdlkidDGvkflrdt........ekkfDviivDstdPvGp...aetlfeke.fyelvkkalnedGvivaq....seslllqlelikdlk.....rkvkev.fekvelylaaiPtypsgllsfivaskn 233
                 ++++lDgv+q     e +yhe + h +++ah+npk+v++iGGG+G+ lrev+kh++ve+++++eiD+ ++++s+k+lp+ s ++         +dd+rv+++  D +++  d          + fDvii+D+ dP       ++l+++  f + v +aln dG+++aq    s++l   +e+ +dl+     r+++++ fe+++ y+ ++    s  + fi a kn
  MMETSP1061-20121228|4908_1 368 RIVFLDGVLQSRRSGEAAYHETLIHPSMFAHKNPKRVAIIGGGEGASLREVLKHNTVETAVMIEIDQMMVDVSRKHLPSWSdCSalagsaescFDDPRVEVQYIDAFQWFIDNfpvdgpsrIDPFDVIIMDALDPQIQkdfVNALYDEGpFLKSVPRALNSDGIFIAQvgesSDNLDPPEEYTSDLNrvrliRSLSRLgFETIRSYIDNMHSGFSFPWQFIAAFKN 593
                 6899**************************************************************************8655433333344559**************8777769999987789***********865111679999864899***************5432233333345566554111113455556777777777766666666777666665 PP

>> TIGR03330  SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   1.1e-25   2.3e-22       3      84 ..     169     250 ..     168     257 .. 0.97

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 1.1e-25
   TIGR03330   3 lGkhllvdlygvdeekledeelieevlleaakaagatlvevafhkfspqGvsgvvvlaESHisiHTwpEkgyaavDvftCgd 84 
                 +G+hll+d+ +v+e+ l+ ee++ +++l+ + ++g+tl++ + hk+ p+Gvs + vl ESH+s HTwp +g +++D++tCg 
  MMETSP1061-20121228|4908_1 169 AGQHLLMDIENVNESFLNSEERLAHAMLDLVGECGLTLLSYHCHKMVPMGVSCAGVLLESHVSFHTWPKEGVITLDLYTCGP 250
                 69*******************************************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (830 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.42
# Mc/sec: 2608.36
//
Query:       MMETSP1061-20121228|4906_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 2045.83
//
Query:       MMETSP1061-20121228|4901_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-117  392.1   0.0    7.1e-99  330.0   0.0    2.6  2  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    3.4e-61  205.5   0.0    1.1e-39  134.5   0.0    3.1  3  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
      1e-53  180.3   0.0    8.4e-25   84.8   0.0    3.1  3  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
    2.2e-11   41.6   0.0    3.4e-11   41.0   0.0    1.3  1  TIGR01134 purF: amidophosphoribosyltransferase
    1.1e-09   35.2   0.0      2e-09   34.3   0.0    1.4  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
     0.0038   14.3   0.0     0.0061   13.6   0.0    1.2  1  TIGR00552 nadE: NAD+ synthetase


Domain annotation for each model (and alignments):
>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  330.0   0.0    1e-101   7.1e-99       1     383 [.       2     381 ..       2     388 .. 0.92
   2 !   59.8   0.1     8e-20   5.4e-17     437     517 .]     383     476 ..     380     476 .. 0.84

  Alignments for each domain:
  == domain 1    score: 330.0 bits;  conditional E-value: 1e-101
   TIGR01536   1 CgiagivdlkakakeeeeaikemletlahRGPDaegvwkd.......ekeenailghrRLaiidlsegaQPlsnek.evvivfnGEIYNheeLreeleekGyeFetksDtEViLaayeewg..eelverLeGmFAfalwdekkgelflaRDrlGikPLYyase.qgkllfaSEiKallalk.eikaeldkealaelltlqlvptektlfkevkelepakaldgeekleeywevekeevkeseeelveelrelledavkkrlvadvpvgvllSGGlDSslvaaiakkeak......sevktFsigfedskdldeskaarkvadelgtehkevliseeevlkeleevilale..eptairasiplyllsklarekgvkVvLsGeGaDElfgGYeyfreakaeeal 383
                 Cgi++i+ ++   ++ ++++   +++l+hRGPD++g +k        +   + ++gh+RLai+d ++g QPl +++ +v++  nGEIYN++eL +el++  y+  t sD+E iL +yee+g   e++ +L+GmF f+l+d++++++++aRD++Gi PLY +   +g+++++SE+K+l+  + +++++++++ ++++            f+++++ + a ++ +  ++ +            e+++ + lr+++e+av++r+++dvp gvllSGGlDSslvaai ++ +        ++++F+ig+e+ +dl    aa+kvad+lgt h+ ++ + +e+ +++++vi+ le  ++t+iras+p+yl++++++++g+k+v+sGeGaDE+fgGY yf++a++++++
  MMETSP1061-20121228|4901_1   2 CGIFSIFSSSLPEDDLRKELITCSQKLRHRGPDWSG-YKVikanpssNIPLAHGIGHERLAIMDPESGSQPLVSRDgNVIVAANGEIYNFKELYKELKTP-YTPMTGSDCECILPLYEEHGpnTEMITNLRGMFSFILYDKRTDTYLIARDHIGITPLYIGWGnDGSVYVSSELKSLVGECnKFQNFPPGHIYSNKGPKA------GEFQRWYKPNWAPEMLPGGEMPK------------ESYQADVLRHAFERAVTRRMMSDVPWGVLLSGGLDSSLVAAICARNVSrrsenfPKLHSFTIGLEGAPDLI---AAKKVADKLGTIHHAYTYTLQEGSDAIPDVIRCLEtyDLTTIRASTPMYLMARKIKAMGIKMVISGEGADEVFGGYLYFHKAPNAQEF 381
                 *********99988877888899*************.565666666424467899*********************8989999***************99.*******************98799***********************************98879***************99*********999987777......55788888777777745444443............3455678************************************9999999999999***************...***********************************************************************************99987 PP

  == domain 2    score: 59.8 bits;  conditional E-value: 8e-20
   TIGR01536 437 eellrldlelllsdllrakDrvsmahslEvRvPflDkelvelalsippelkl.r.........dgkeKvlLreaaee....llPeeileRkKeaf 517
                 +e++++   l+++d+lr + ++++a+++E RvPflD +++++a++++pe k+ r          + eK+ +r+a+++    +lP+eil+R+Ke+f
  MMETSP1061-20121228|4901_1 383 DETVDKLSRLHMYDCLRCN-KAMSAWGVEPRVPFLDADFLQVAMNLDPEEKMiRkgpkisaedTKIEKWAIRKAFDTpddpYLPKEILWRQKEQF 476
                 6777888899*********.****************************5554222222224456789*********9999*************99 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.5   0.0   1.6e-42   1.1e-39       1     169 [.       1     179 [.       1     193 [. 0.89
   2 !   53.7   0.0   4.5e-18     3e-15     236     377 ..     223     372 ..     181     398 .. 0.75
   3 !   14.1   0.0   4.4e-06     0.003     500     588 ..     401     503 ..     396     508 .. 0.74

  Alignments for each domain:
  == domain 1    score: 134.5 bits;  conditional E-value: 1.6e-42
   TIGR03108   1 mcGiagifdlegkreidrellkrmnealahrGPdeegvhv...ep..Gi....glghrrlsiidlaggkqPlanedgsvvvvfnGeiynfkelvkelealGhqfrtksdtevivhaWeeWG..edcverlrGmfafalwdrkketlflardrlgvkPlyyalledGalifgselkallah 169
                 mcGi +if+ +  ++  r+ l + +++l+hrGPd  g+ v   +p   i    g+gh rl+i+d  +g+qPl++ dg+v+v  nGeiynfkel kel++  ++  t sd e i+  +ee G  ++ +++lrGmf+f+l+d++ +t ++ard +g+ Ply +  +dG++ ++selk+l+  
  MMETSP1061-20121228|4901_1   1 MCGIFSIFSSSLPEDDLRKELITCSQKLRHRGPDWSGYKVikaNPssNIplahGIGHERLAIMDPESGSQPLVSRDGNVIVAANGEIYNFKELYKELKT-PYTPMTGSDCECILPLYEEHGpnTEMITNLRGMFSFILYDKRTDTYLIARDHIGITPLYIGWGNDGSVYVSSELKSLVGE 179
                 9*********99999888999999**********99986533333223333338899****************************************97.57888****************445679**************************************************865 PP

  == domain 2    score: 53.7 bits;  conditional E-value: 4.5e-18
   TIGR03108 236 eeeleeelierlkeavelrlvadvPlGaflsGGvdssavvallaklsee.....P.vktcsiafddaafdeaeyakkvaeryktehkvetve....addfdlvdrlaglydePfadssalPtyrvce.larkrvtvalsGdGgdelfaGyrry 377
                 e+  ++ l + ++ av+ r+++dvP G +lsGG+dss v a+ a+  ++     P +++ +i+++ a   +   akkva++++t h+  t +    +d++  v r  + yd     +s  P y + + + +  +++++sG+G+de f+Gy  +
  MMETSP1061-20121228|4901_1 223 ESYQADVLRHAFERAVTRRMMSDVPWGVLLSGGLDSSLVAAICARNVSRrsenfPkLHSFTIGLEGA--PDLIAAKKVADKLGTIHHAYTYTlqegSDAIPDVIRCLETYDLTTIRAS-TPMYLMARkIKAMGIKMVISGEGADEVFGGYLYF 372
                 444456677889******************************9987654222233367788888765..456679*********9987665411224567777888899**9988887.58888875156678*****************654 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 4.4e-06
   TIGR03108 500 drasmavglevrvPlldhrlvewaaklpsslklrga.......e...Gkyllkkale....pylpedvlyrkkmGfsvPlaeWlrGPlkervralvssevlae 588
                 ++a  a g+e rvP+ld  +++ a +l  + k+ ++       +    k+ ++ka++    pylp+++l+r+k  fs  +       l++ + + +s++++a+
  MMETSP1061-20121228|4901_1 401 NKAMSAWGVEPRVPFLDADFLQVAMNLDPEEKMIRKgpkisaeDtkiEKWAIRKAFDtpddPYLPKEILWRQKEQFSDGVGYGWVDHLRDIAEKEISDQMFAN 503
                 6778899********************98877643211111112222589999998533338**************998877666677777777777777665 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   1.2e-27   8.4e-25       1     166 [.       1     177 [.       1     186 [. 0.80
   2 !   74.6   0.0   1.5e-24     1e-21     235     390 ..     219     379 ..     181     396 .. 0.76
   3 !   18.0   0.0   2.1e-07   0.00014     459     500 ..     399     440 ..     375     447 .. 0.76

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 1.2e-27
   TIGR03104   1 mcGiaGelrfdgraadv.aavermaaelakrGPdaeGvfa..qg...kv....alGhrrlkiidlseasqqPmvdaelglalvfnGaiynykelreelealGyrffsegdtevilkayhawG..eelvsrleGmfafaiwerdsgrlllardrlGikPlyla.edekrlrfasslpall 166
                 mcGi   +       d+ + + + +++l++rGPd +G  +  ++   ++    ++Gh rl+i+d  e+++qP+v  + ++ ++ nG iyn+kel +el++  y+ ++ +d e il  y++ G  +e++++l Gmf+f +++++++  l+ard +Gi Ply+   +++++  +s+l++l+
  MMETSP1061-20121228|4901_1   1 MCGIFSIFSSSLPEDDLrKELITCSQKLRHRGPDWSGYKVikANpssNIplahGIGHERLAIMD-PESGSQPLVSRDGNVIVAANGEIYNFKELYKELKT-PYTPMTGSDCECILPLYEEHGpnTEMITNLRGMFSFILYDKRTDTYLIARDHIGITPLYIGwGNDGSVYVSSELKSLV 177
                 666665544443333431456778899********997542222222332233589********.68999****************************75.7*******************955589*********************************9724667788888888887 PP

  == domain 2    score: 74.6 bits;  conditional E-value: 1.5e-24
   TIGR03104 235 alseedwk.davlealrlavkrrlvadvpvGvllsGGldssllvallaeagve......dlktfsvGfedvggekgdefeysdliaerfetrhhkllipeeevlealpeavaamsePmvs..hdavafyllseev.skevkvvqsGqGadevfaGyhwyPklaaae 390
                 ++ +e ++ d +++a+++av+rr+++dvp GvllsGGldssl+ a+ a+   +      +l++f++G+e +++        +  +a++  t hh ++ + +e  +a+p+ ++ +    ++  + +  +yl+++++ +  +k+v sG Gadevf+Gy ++ k  +a+
  MMETSP1061-20121228|4901_1 219 EMPKESYQaDVLRHAFERAVTRRMMSDVPWGVLLSGGLDSSLVAAICARNVSRrsenfpKLHSFTIGLEGAPDL-----IAAKKVADKLGTIHHAYTYTLQEGSDAIPDVIRCLETYDLTtiRASTPMYLMARKIkAMGIKMVISGEGADEVFGGYLYFHKAPNAQ 379
                 3444444416778999*******************************987654222222689999999988765.....55789***************************9987765551257788*******934679*****************998874333 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 2.1e-07
   TIGR03104 459 rvdnmtmawGlearvPfldhelvelaariPaelklkdeGklv 500
                 r +    awG+e rvPfld ++ ++a+++ +e k+  +G ++
  MMETSP1061-20121228|4901_1 399 RCNKAMSAWGVEPRVPFLDADFLQVAMNLDPEEKMIRKGPKI 440
                 55555669**************************98888665 PP

>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   4.9e-14   3.4e-11      53     218 ..      40     195 ..      18     209 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 4.9e-14
   TIGR01134  53 vfeeekleklkgkvaagHvRYsTaGsskseeaqPlvvssavgglalaHNGnlvnaeelreeleeegrkfntssDsevllallaeeeeskeelekavaevlervkGaYalvlmse..eklvavrDPvGvrPLvlgrkedg.yvvaSEsvAldlgaelvrdvepgevvvlk 218
                 v++++  +++  + ++gH R +      ++ +qPlv +    ++ +a NG++ n++el +el++   +  t sD e +l l +e+  ++   +    e++++++G ++++l ++  ++ + +rD  G+ PL +g  +dg  +v+SE   l  + + +++  pg ++  k
  MMETSP1061-20121228|4901_1  40 VIKANPSSNIPLAHGIGHERLAIMDP--ESGSQPLVSRDG--NVIVAANGEIYNFKELYKELKTP-YTPMTGSDCECILPLYEEH-GPN---T----EMITNLRGMFSFILYDKrtDTYLIARDHIGITPLYIGWGNDGsVYVSSELKSLVGECNKFQNFPPGHIYSNK 195
                 55666667777788999999998875..5899****8665..689******************95.68899********999863.332...2....345578999999887652267899*************77777699********9888889******998754 PP

>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   2.9e-12     2e-09      59     210 ..      46     189 ..       2     197 .. 0.86

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 2.9e-12
   TIGR01135  59 ekelegkvgigHtRWaTHGkpteeNaHPHvdekgeiavvhNGiieNykelreelekkgvefkSdTDtEviahlieeelkeeedlleavqkalkklrGayalavldkdepeklvaarke...sPLivglge.genfvaSdvtallevtrrvvvLedg 210
                 ++++  + gigH R a      e  + P v+ +g+++v  NG i N+kel +el++  ++     D E i  l ee+  +        ++++++lrG +++++ dk+++  l +ar +   +PL +g g+ g ++v+S+ ++l+  +++++ +  g
  MMETSP1061-20121228|4901_1  46 SSNIPLAHGIGHERLAIMDP--ESGSQPLVSRDGNVIVAANGEIYNFKELYKELKT-PYTPMTGSDCECILPLYEEHGPN--------TEMITNLRGMFSFILYDKRTDTYL-IARDHigiTPLYIGWGNdGSVYVSSELKSLVGECNKFQNFPPG 189
                 45678899********9754..44799***************************87.8999999**********999887........45899*******999998887755.566543458******9725789***********9999877655 PP

>> TIGR00552  nadE: NAD+ synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0     9e-06    0.0061      17      79 ..     238     304 ..     224     320 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9e-06
   TIGR00552  17 vkksgakgvvlG..lSGGiDSavvaalavealgk..eevlalilpesnqaseqdvqdalalveklgi 79 
                 v ++ ++ v  G  lSGG+DS++vaa++ + + +  e++  l    +  +   d+ +a+++++klg 
  MMETSP1061-20121228|4901_1 238 VTRRMMSDVPWGvlLSGGLDSSLVAAICARNVSRrsENFPKLHSFTIGLEGAPDLIAAKKVADKLGT 304
                 555666666666448*************998876434444444455555566677777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.42
# Mc/sec: 1885.56
//
Query:       MMETSP1061-20121228|4910_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-44  150.3  11.3    3.4e-33  113.0   0.8    2.4  2  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
    7.6e-32  108.6   4.7    2.8e-18   64.2   0.0    2.6  3  TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
    4.6e-28   96.4   6.8    1.1e-25   88.6   4.7    2.5  1  TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS
    9.9e-23   78.8   1.0    1.7e-12   45.3   0.0    2.5  2  TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
    3.2e-22   77.2  10.4    2.9e-11   41.4   0.0    3.1  3  TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
    1.6e-20   71.7   0.1    2.2e-13   48.4   0.0    2.6  2  TIGR02885 spore_sigF: RNA polymerase sigma-F factor
    2.8e-20   70.4   0.0    2.8e-20   70.4   0.0    3.1  1  TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
    7.3e-18   63.0  16.8    2.6e-11   41.5   0.1    2.8  3  TIGR02392 rpoH_proteo: alternative sigma factor RpoH
    1.5e-17   61.7   0.1    2.2e-08   31.7   0.1    2.5  2  TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor
    4.5e-17   60.2   0.2    8.8e-09   33.1   0.0    2.6  2  TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor
    8.2e-14   49.5   0.1    6.6e-07   26.9   0.0    2.7  2  TIGR02850 spore_sigG: RNA polymerase sigma-G factor
      2e-09   35.1   2.4    0.00034   18.0   0.7    2.4  2  TIGR02941 Sigma_B: RNA polymerase sigma-B factor
     0.0072   13.3   0.1      0.013   12.5   0.1    1.4  1  TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II
  ------ inclusion threshold ------
      0.011   12.8   0.2      0.019   12.0   0.2    1.3  1  TIGR00057 TIGR00057: Sua5/YciO/YrdC/YwlC family protein


Domain annotation for each model (and alignments):
>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.0   0.8   1.2e-35   3.4e-33      13     207 ..     252     452 ..     245     456 .. 0.86
   2 !   44.3   1.2     1e-14   2.9e-12     173     298 .]     454     594 ..     436     594 .. 0.76

  Alignments for each domain:
  == domain 1    score: 113.0 bits;  conditional E-value: 1.2e-35
   TIGR02997  13 vplltaeeeielarqvqellaleekkeeleeqlekepskeelakavdlse.kelkkalkqgrrAkeklikanLRLvvsvAkk.Y....qkrglellDLiqeGslGleravekFdptkGykfstyAyWWirqgitraiaeqsrtiRlPiHiteklnklkkvqrelsqklg.repseaelaealeleveqvrellkaarkpvsL 207
                  + +++eeeiela+ +q+ + l++ k++ e++++++ +k+e+a+ ++l++ ++l++ + + rrAk+ l++an+ Lv +v kk Y    ++ g+   +L+qeGslGl ra+e Fdp++G +fstyA+ Wi+  +  + a +   +++P   ++k +k+ k++rel+q++g    s   ++ ++ +++e       +++++ sL
  MMETSP1061-20121228|4910_1 252 AQTVSPEEEIELAKMIQRGVWLHKLKTDREASESRSLTKSEWARLANLETaTQLRREVATYRRAKQLLVSANMGLVHTVVKKhYydvrKRSGVTYEELVQEGSLGLLRAAELFDPSRGIRFSTYATIWIKGHLSNSHALDG-AMKVPAVEKQKWKKILKAHRELVQEKGgSIGSSGSMSMSMSMNHEATGLSSLSSSSSSSL 452
                 567899*****************************************9752789*************************9994344434679******************************************9999876.68*********************9987255677788888888776654444444444444 PP

  == domain 2    score: 44.3 bits;  conditional E-value: 1e-14
   TIGR02997 173 klgrepseaelaealeleveqv...rellkaarkpvsLd......akvGkeedtelgdlled.eeee..Peee.veeellkedleella.eLkererevlrlrfGle.deeeltlaeigeelnlsrervrqiekkalkklr 298
                 + + + s++e+a++l+++ve+v   ++ +++a++ +sLd      ++ G+++ ++ g+ll+d ++++   +++  e++ ++ d+ +++a +L++re +++rlr+Gl+ d++++t++e ++ +++s+ r  q+ k  l klr
  MMETSP1061-20121228|4910_1 454 SSSSTVSVEEIANRLDMKVEDVilsQRKMRQAKSVLSLDyeyqqqSRGGSDQSSTGGQLLADmDDTSirADAHlAERTQMQADVIAAMArNLTPREARLMRLRYGLTtDGKTRTIQECADAMGVSQARASQLAKACLLKLR 594
                 55678899*************944334455666678998333322245999999999***9964443113333156777888877776516***************7367899**************************98 PP

>> TIGR02393  RpoD_Cterm: RNA polymerase sigma factor RpoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.1       2.2   6.6e+02      87      87 ..     219     219 ..     142     283 .. 0.61
   2 !   64.2   0.0   9.7e-21   2.8e-18       1     104 [.     315     422 ..     315     454 .. 0.82
   3 !   46.3   0.2   2.9e-15   8.4e-13      99     237 ..     454     606 ..     436     607 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.2
   TIGR02393  87 n 87 
                 n
  MMETSP1061-20121228|4910_1 219 N 219
                 1 PP

  == domain 2    score: 64.2 bits;  conditional E-value: 9.7e-21
   TIGR02393   1 akkklvesnlrlvvsiakky.....lnrGlsfldliqeGniGllkavekfdykkgykfstyatWWirqaitraiadqartiriPvhlvetinklakaerkllqelgrep 104
                 ak+ lv++n+ lv ++ kk+     +  G+++ +l+qeG++Gll+a e fd ++g +fstyat Wi+  ++ + a     +++P    ++ +k+ ka+r+l+qe g   
  MMETSP1061-20121228|4910_1 315 AKQLLVSANMGLVHTVVKKHyydvrKRSGVTYEELVQEGSLGLLRAAELFDPSRGIRFSTYATIWIKGHLSNSHALDG-AMKVPAVEKQKWKKILKAHRELVQEKGGSI 422
                 7999***********9999633332245*******************************************9998654.5899*99999**************998653 PP

  == domain 3    score: 46.3 bits;  conditional E-value: 2.9e-15
   TIGR02393  99 elgrepteeelaeklgleaekv...keikklakepvslekpi......geeedselgdfi...edeevespedaaakellkeeleevle.tlsereekvlklryGledg.kektleevgkefnvtrerirqieskalrklrhpskskklkdfl 237
                 + +   + ee+a++l++++e v   ++ ++ ak  +sl+ +       g+++ s+ g ++   +d+++   ++ a++++++ ++ + +  +l++re+++++lryGl+ + k++t++e + +++v++ r  q+ +  l klr+++++++l+++l
  MMETSP1061-20121228|4910_1 454 SSSSTVSVEEIANRLDMKVEDVilsQRKMRQAKSVLSLDYEYqqqsrgGSDQSSTGGQLLadmDDTSIRADAHLAERTQMQADVIAAMArNLTPREARLMRLRYGLTTDgKTRTIQECADAMGVSQARASQLAKACLLKLREAAEADSLEEYL 606
                 55667789********99998732222233456778998654222222567777666665111556677777777777777665555554****************8665****************************************997 PP

>> TIGR02394  rpoS_proteo: RNA polymerase sigma factor RpoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   4.7   3.7e-28   1.1e-25      32     280 ..     300     603 ..     277     608 .. 0.83

  Alignments for each domain:
  == domain 1    score: 88.6 bits;  conditional E-value: 3.7e-28
   TIGR02394  32 eelalarralaGdvearkkmiesnlrlvvkiak.kyvn....rGlplldlieeGnlGllkavekfdPerGfrfstyatWWirqtieraimnqartirlPvhvvkelnvvlraarklekkld.....................................reasveevaelldkpvedv...skllklnekiasldapldeds......ekslldllad..ekseePeelv.qnedlk.elieallaelnekerevlarrfGlr.eyekatleevakelgltrervrqiqvealkklkrileregvd 280
                 e  +  rr +a   +a++ ++ +n+ lv  + k +y +    +G++  +l++eG lGll+a e fdP rG rfstyat Wi+  +  + +     +++P    +   ++l+a+r+l ++++                                       +svee+a+ ld  vedv   ++ ++ ++++ sld   +++s      +++  +llad  + s+  ++++ ++++++ ++i a+  +l+ +e +++  r+Gl+ +  + t++e a+++g+ + r  q+   +l kl++  e ++++
  MMETSP1061-20121228|4910_1 300 ETATQLRREVATYRRAKQLLVSANMGLVHTVVKkHYYDvrkrSGVTYEELVQEGSLGLLRAAELFDPSRGIRFSTYATIWIKGHLSNS-HALDGAMKVPAVEKQKWKKILKAHRELVQEKGgsigssgsmsmsmsmnheatglsslssssssslssssSTVSVEEIANRLDMKVEDVilsQRKMRQAKSVLSLDYEYQQQSrggsdqSSTGGQLLADmdDTSIRADAHLaERTQMQaDVIAAMARNLTPREARLMRLRYGLTtDGKTRTIQECADAMGVSQARASQLAKACLLKLREAAEADSLE 603
                 555556778888899*************987652675433337****************************************99877.455668999*999999*************8888999******************************998899***************9666688999********9987654222220444457788622555555555514556662467888899***************8255779*****************************99988876 PP

>> TIGR02980  SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   5.9e-15   1.7e-12       2     122 ..     313     438 ..     312     459 .. 0.77
   2 !   31.1   0.9   1.3e-10   3.9e-08     106     226 ..     458     597 ..     442     598 .. 0.69

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 5.9e-15
   TIGR02980   2 keareklvelnlkLvesiarrf....rsr.geeleDlvQvgtiGLlkaidrfdlsrgvkFstyavPtivGEikr.flRDktwavrvpRrlkelaakikkateeLtqklg.rePtveeiaeelevseee 122
                 ++a++ lv++n+ Lv+++++++    r+r g ++e+lvQ g +GLl+a + fd+srg +Fstya   i G +   +  D   a++vp   k+ ++ki ka+ eL q+ g    +   ++  +++++e 
  MMETSP1061-20121228|4910_1 313 RRAKQLLVSANMGLVHTVVKKHyydvRKRsGVTYEELVQEGSLGLLRAAELFDPSRGIRFSTYATIWIKGHLSNsHALDG--AMKVPAVEKQKWKKILKAHRELVQEKGgSIGSSGSMSMSMSMNHEA 438
                 578899*************99534443442556**************************************986255555..6*********************999851445555666666666655 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 1.3e-10
   TIGR02980 106 ePtveeiaeelevseeevvea.leaaksysassldasve.dd...dgdeialldtlge.......edeel.eev.eeklalkellakLdererrilllrf...f..edktQseiaeelGiSQmqvSRlekralkklreel 226
                 + +veeia++l+++ e+v+    ++ ++ s++sld + + ++   ++++ +  + l++       +d +l e++  +  ++  + ++L +re r++ lr+   +  + +t +e a+ +G+SQ + S l k +l klre++
  MMETSP1061-20121228|4910_1 458 TVSVEEIANRLDMKVEDVILSqRKMRQAKSVLSLDYEYQqQSrggSDQSSTGGQLLADmddtsirADAHLaERTqMQADVIAAMARNLTPREARLMRLRYgltTdgKTRTIQECADAMGVSQARASQLAKACLLKLREAA 597
                 4579************98765156778888999998877333111233333334444411122223333212221455667788889*************554233567789*************************986 PP

>> TIGR02479  FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.6       1.2   3.5e+02      87     136 ..     225     274 ..     205     323 .. 0.50
   2 !   41.4   0.0   9.8e-14   2.9e-11       9      98 ..     327     420 ..     319     454 .. 0.77
   3 !   40.9   1.0   1.4e-13   4.1e-11      96     221 ..     455     595 ..     439     598 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.2
   TIGR02479  87 eaieelearlgrepteeeiaeelgldlkevrkaleeinaeslvsldelle 136
                 ++ ++ + +++r+ t++     l+ +  +  + +eei+ +++++   +l+
  MMETSP1061-20121228|4910_1 225 QQQQQTKTKTKRTTTKASKRSDLEFSSAQTVSPEEEIELAKMIQRGVWLH 274
                 33344444455555555555555555555555555555554444333333 PP

  == domain 2    score: 41.4 bits;  conditional E-value: 9.8e-14
   TIGR02479   9 Vkrvaer..lkvklpssveleDliqaGmlgLldaierydeekgvkFetyavlRirGailD..eLRkldwvprslrkkakkleeaieelearlgr 98 
                 V+ v+++    v+  s v +e+l+q G lgLl a+e +d+++g++F+tya+++i+G + +   L     vp   ++k kk+ +a +el ++ g 
  MMETSP1061-20121228|4910_1 327 VHTVVKKhyYDVRKRSGVTYEELVQEGSLGLLRAAELFDPSRGIRFSTYATIWIKGHLSNshALDGAMKVPAVEKQKWKKILKAHRELVQEKGG 420
                 555555411235667889**************************************987622577788899999*******9999999877654 PP

  == domain 3    score: 40.9 bits;  conditional E-value: 1.4e-13
   TIGR02479  96 lgrepteeeiaeelgldlkevrkaleei.naeslvsldellesedee........lsladliedkksedpeeelereelke.klaeaiekLsereklvlsLyYe.....eeLnlkEigevLelsesRvsQlhskalkkLra 221
                  +++ + eeia+ l++++++v   ++++ +a+s++sld  +++++ +        ++l + ++d++ ++ ++ +er +++   +a +  +L+ re  ++ L Y      +  +++E ++ +++s++R sQl + +l kLr+
  MMETSP1061-20121228|4910_1 455 SSSTVSVEEIANRLDMKVEDVILSQRKMrQAKSVLSLDYEYQQQSRGgsdqsstgGQLLADMDDTSIRADAHLAERTQMQAdVIAAMARNLTPREARLMRLRYGlttdgKTRTIQECADAMGVSQARASQLAKACLLKLRE 595
                 5678899*************9876666527899*****9999887777888888866777777777777888888888776156667789*************633333567899*************************8 PP

>> TIGR02885  spore_sigF: RNA polymerase sigma-F factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   7.5e-16   2.2e-13      10     111 ..     313     419 ..     305     454 .. 0.86
   2 !   20.9   0.1   1.9e-07   5.5e-05     113     229 ..     458     595 ..     422     597 .. 0.68

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 7.5e-16
   TIGR02885  10 keardklveenlrlvssivkrfl.....nrGyeledlfqiGciGlvkaidkfdlsydvkfstyavPliiGeikrflrddgiikvsrslkelakkirkekeelakkle 111
                 ++a++ lv  n+ lv+++vk+        +G  +e+l q G++Gl++a + fd s  ++fstya   i G +      dg++kv    k+  kki k + el+++ +
  MMETSP1061-20121228|4910_1 313 RRAKQLLVSANMGLVHTVVKKHYydvrkRSGVTYEELVQEGSLGLLRAAELFDPSRGIRFSTYATIWIKGHLSNSHALDGAMKVPAVEKQKWKKILKAHRELVQEKG 419
                 678999**************9742333257*******************************************************************9999988754 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 1.9e-07
   TIGR02885 113 ePtieelaealglekeevvaalesakslqsl......ydtvheddgdpi....llldkiade.geeesdllekialke.....alkkldererqiillryf.....kdktqtevakilGisqvqvsrlekkvlkklke 229
                   ++ee+a++l+++ e+v+ ++   ++++s+      y+  ++   d+     +ll  + d+    + +l e+  ++      + ++l++re +++ lry      k +t  e a+ +G+sq + s+l k  l kl+e
  MMETSP1061-20121228|4910_1 458 TVSVEEIANRLDMKVEDVILSQRKMRQAKSVlsldyeYQQQSRGGSDQSstggQLLADMDDTsIRADAHLAERTQMQAdviaaMARNLTPREARLMRLRYGlttdgKTRTIQECADAMGVSQARASQLAKACLLKLRE 595
                 4579***************99876666555423241144444333333211226776665541467888888887764211114589*************544444778899***********************997 PP

>> TIGR02937  sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.4   0.0   9.7e-23   2.8e-20       5     164 ..     318     596 ..     314     597 .. 0.76

  Alignments for each domain:
  == domain 1    score: 70.4 bits;  conditional E-value: 9.7e-23
   TIGR02937   5 qliesylplvykvark..y..lgds...ldaeDlvqegflglikaldkfdpe..ssfktyaysvirnsiidalr...........rkrelkv.tneveiske.................................................................................keeeeledeed.......................rpeeqeeaeelrerleqalekLperereilklry.....leglslkeiAeelgisqetvsrilkraikkLkkk 164
                  l+ +++ lv+ v++k  y  +  +   +++e+lvqeg lgl++a + fdp+   +f+tya+ +i++++ +              +++++k+ + ++e+++e                                                                                 +                                 + + +e+ + + +++    ++L++re ++++lry      +  + +e A+ +g+sq + s++ k ++ kL+++
  MMETSP1061-20121228|4910_1 318 LLVSANMGLVHTVVKKhyYdvR--KrsgVTYEELVQEGSLGLLRAAELFDPSrgIRFSTYATIWIKGHLSNSHAldgamkvpaveKQKWKKIlKAHRELVQEkggsigssgsmsmsmsmnheatglsslssssssslssssstvsveeianrldmkvedvilsqrkmrqaksvlsldyeyqqqS---------RggsdqsstggqlladmddtsiraDAHLAERTQMQADVIAAMARNLTPREARLMRLRYglttdGKTRTIQECADAMGVSQARASQLAKACLLKLREA 596
                 58999***********541333..144699**********************9999***************966556555666553333332133444444478888888*****************999999999999999988877777777777777777777777766665555555550.........15555555555556666666666445666666666777777777**************666555577****************************96 PP

>> TIGR02392  rpoH_proteo: alternative sigma factor RpoH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.3       3.6     1e+03     207     217 ..     229     239 ..     177     269 .. 0.58
   2 !   41.5   0.1     9e-14   2.6e-11      34     101 ..     313     385 ..     280     410 .. 0.79
   3 !   30.9   2.9   1.5e-10   4.3e-08     134     267 ..     453     596 ..     442     599 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 3.6
   TIGR02392 207 kqkeklkeale 217
                 ++k+k k++ +
  MMETSP1061-20121228|4910_1 229 QTKTKTKRTTT 239
                 22222222222 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 9e-14
   TIGR02392  34 leaakkLvlshLrlvvkiarg.Y....rgYGLpqadliqegniGLmkavkrfdPergvRlvsfavhWikaeih 101
                 + a + Lv +++ lv ++ ++ Y    +  G++  +l+qeg +GL++a   fdP+rg+R++++a  Wik ++ 
  MMETSP1061-20121228|4910_1 313 RRAKQLLVSANMGLVHTVVKKhYydvrKRSGVTYEELVQEGSLGLLRAAELFDPSRGIRFSTYATIWIKGHLS 385
                 345555677799999888765243443457***************************************9875 PP

  == domain 3    score: 30.9 bits;  conditional E-value: 1.5e-10
   TIGR02392 134 kgalseeeveavaeeLgvseeevlemesRlsgk......DlsleaeseededeseelieyLadkeseaeee.leeeeeeekqkeklkealekldersrriieaRw.le..dekltLeelaaeygvsaeRvRqiekkalkklkaa 267
                 ++  s+  ve++a++L+++ e+v+  +++++ +      D+  +++s+  +d+s +  ++Lad +++  ++  +  e+++ q++ +++  ++l  r+ r+++ R  l+   ++ t++e a+ +gvs+ R  q+ k+ l kl++a
  MMETSP1061-20121228|4910_1 453 SSSSSTVSVEEIANRLDMKVEDVILSQRKMRQAksvlslDYEYQQQSRGGSDQSSTGGQLLADMDDTSIRAdAHLAERTQMQADVIAAMARNLTPREARLMRLRYgLTtdGKTRTIQECADAMGVSQARASQLAKACLLKLREA 596
                 455677789**************999998876512111244444555555566667788999985554444044455555555666666679***********97444324588***************************987 PP

>> TIGR02835  spore_sigmaE: RNA polymerase sigma-E factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   1.6e-09   4.8e-07      38     113 ..     300     380 ..     289     385 .. 0.84
   2 !   31.7   0.1   7.3e-11   2.2e-08     170     228 ..     536     595 ..     472     599 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.6e-09
   TIGR02835  38 eeealleklekgdeavksiliernlrlvvyiarkf.....entginiedlvsigtiglikavntfdpekkiklatyasrci 113
                 e ++ l++ +   + +k++l+  n+ lv  + +k      + +g++ e+lv  g++gl++a + fdp++ i+++tya+  i
  MMETSP1061-20121228|4910_1 300 ETATQLRREVATYRRAKQLLVSANMGLVHTVVKKHyydvrKRSGVTYEELVQEGSLGLLRAAELFDPSRGIRFSTYATIWI 380
                 5566667777777899*************99999634333579**********************************8766 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 7.3e-11
   TIGR02835 170 ellkkalkklndrekkilelrfgla.dgeektqkevadllgisqsyisrlekrilkrlkk 228
                 +++    ++l+ re ++++lr+gl+ dg+ +t +e ad +g+sq+  s+l k  l +l+ 
  MMETSP1061-20121228|4910_1 536 DVIAAMARNLTPREARLMRLRYGLTtDGKTRTIQECADAMGVSQARASQLAKACLLKLRE 595
                 3344444679*************96489*************************9999875 PP

>> TIGR02846  spore_sigmaK: RNA polymerase sigma-K factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0     3e-11   8.8e-09      34     109 ..     300     380 ..     289     387 .. 0.85
   2 !   24.5   0.0   1.2e-08   3.6e-06     161     223 ..     531     594 ..     502     598 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 3e-11
   TIGR02846  34 eekkylerlkeGdeearnvliernlrlvahivkkfen.....tgkdvddlisiGtiGlikaidsfdtekGtklatyaarci 109
                 e ++ l r     ++a++ l+  n+ lv  +vkk+ +     +g   ++l+  G++Gl++a + fd+++G++++tya+  i
  MMETSP1061-20121228|4910_1 300 ETATQLRREVATYRRAKQLLVSANMGLVHTVVKKHYYdvrkrSGVTYEELVQEGSLGLLRAAELFDPSRGIRFSTYATIWI 380
                 555666677777889*******************7654566688899******************************8665 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 1.2e-08
   TIGR02846 161 kklevkklkkklkvlkerekevielryGlk.dgeektqreiakklgisrsyvsriekkalkkll 223
                 ++++++ +    + l++re ++++lryGl+ dg+++t +e a  +g+s++  s++ k  l kl 
  MMETSP1061-20121228|4910_1 531 TQMQADVIAAMARNLTPREARLMRLRYGLTtDGKTRTIQECADAMGVSQARASQLAKACLLKLR 594
                 568888888888****************963799***************************996 PP

>> TIGR02850  spore_sigG: RNA polymerase sigma-G factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.2e-09   6.6e-07      30     114 ..     310     399 ..     286     439 .. 0.76
   2 !   19.4   0.2   4.3e-07   0.00012     131     252 ..     453     595 ..     447     597 .. 0.64

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.2e-09
   TIGR02850  30 egdkeareklingnlrlvlsviqrf.....nnrgeyvddlfqvgcigllksidnfdlsqnvkfstyavpmiigeirrylrdnnpirvsrs 114
                     +a++ l+++n+ lv +v+++      +  g   ++l q g +gll++ + fd s+ ++fstya   i g +      + +++v   
  MMETSP1061-20121228|4910_1 310 ATYRRAKQLLVSANMGLVHTVVKKHyydvrKRSGVTYEELVQEGSLGLLRAAELFDPSRGIRFSTYATIWIKGHLSNSHALDGAMKVPAV 399
                 55678999**************9852322123477889******************************9999988766555555555555 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 4.3e-07
   TIGR02850 131 skkskeptvseiakelevpkeevvfaldaiqdpvslfepiyn.........d....ggdpiyvmdqis..dekn.kdeswleeialkeal.krlnereklilklrf...fegktq..mevaeeigisqaqvsrlekaalkqlkk 252
                 s +s   +v+eia+ l++  e+v+++   +++  s++   y+         d    gg+ +  md+ s   + +  +++ ++   +  a+ ++l+ re  +++lr+    +gkt+   e a+ +g+sqa+ s+l ka+l +l+ 
  MMETSP1061-20121228|4910_1 453 SSSSSTVSVEEIANRLDMKVEDVILSQRKMRQAKSVLSLDYEyqqqsrggsDqsstGGQLLADMDDTSirADAHlAERTQMQADVI-AAMaRNLTPREARLMRLRYgltTDGKTRtiQECADAMGVSQARASQLAKACLLKLRE 595
                 55666778999************999999888777655444311222211111111334444555443112222022333333333.4551679***********86556898763269*******************999875 PP

>> TIGR02941  Sigma_B: RNA polymerase sigma-B factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.6e-06    0.0014      30     128 ..     315     417 ..     297     429 .. 0.76
   2 !   18.0   0.7   1.2e-06   0.00034     132     254 ..     458     598 ..     445     599 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.6e-06
   TIGR02941  30 aqeklvkkykdlvesiayky.....skgsaihedlvqvGmvGllgairrydlsigkafeafaiptiiGeikrylrdktwsvhvprrikelGpkikkavdeltae 128
                 a++ lv+    lv+++ +k+      +++ ++e+lvq G +Gll a + +d+s g +f ++a   i G + +       +++vp   k+   ki ka  el +e
  MMETSP1061-20121228|4910_1 315 AKQLLVSANMGLVHTVVKKHyydvrKRSGVTYEELVQEGSLGLLRAAELFDPSRGIRFSTYATIWIKGHLSNSH-ALDGAMKVPAVEKQKWKKILKAHRELVQE 417
                 55566777777777776653123223456789******************************999999886532.23346778888888888888888888776 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 1.2e-06
   TIGR02941 132 spkiaeiadrlgvseeev.leimemgqsykalsvddkieadsdGst...valldlvGesedg.....ydqtekrlvlekilpi....lserekeiiecifi.....enlsqketGerlGisqmhvsrlkrraikklkeaaq 254
                 + ++ eia+rl++  e+v l   +m+q+  +ls+d + +++s G +    +  +l+ + +d       + +e+  +  +++      l+ re ++++  +      +  + +e  + +G+sq   s+l + ++ kl+eaa 
  MMETSP1061-20121228|4910_1 458 TVSVEEIANRLDMKVEDViLSQRKMRQAKSVLSLDYEYQQQSRGGSdqsSTGGQLLADMDDTsiradAHLAERTQMQADVIAAmarnLTPREARLMRLRYGlttdgKTRTIQECADAMGVSQARASQLAKACLLKLREAAE 598
                 45799*******987776378899***********99988876533111233344555554311111346788777777765422226789****999886112113344568999***********************85 PP

>> TIGR02195  heptsyl_trn_II: lipopolysaccharide heptosyltransferase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   4.4e-05     0.013     141     270 ..     205     329 ..     169     334 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.4e-05
   TIGR02195 141 kaadlPqplpkPqLevekeekaevlakfeLeterplialcPGaefGpakrWPaehyaelakkliaeggyqvvllGskkdkevaeeieklaeeelreyssnLaGetsLdeavdlialak.avvsnDsGLmhv 270
                  ++ +P++lp+P +++ ++++++  +k + + +    +     ef  a+    e  +elak+++ +g   v+l   k d+e++e+ + +++e +r    nL  +t+L   v+   +ak ++vs + GL+h 
  MMETSP1061-20121228|4910_1 205 AMSSVPEQLPQPAVNAFRQQQQQQQTKTKTKRTTTKASKRSDLEFSSAQTVSPEEEIELAKMIQ-RG---VWLHKLKTDREASESRSLTKSEWAR--LANLETATQLRREVATYRRAKqLLVSANMGLVHT 329
                 46789***********999999999999988888888999999*****************8765.55...9**********99986555555555..89************999998726799*******6 PP

>> TIGR00057  TIGR00057: Sua5/YciO/YrdC/YwlC family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.2   6.6e-05     0.019     135     185 ..     447     496 ..     432     508 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.6e-05
   TIGR00057 135 atSanlsgkesateveeivkeldkkvdliidagevkkgeestvvdltekep 185
                 ++S  ls + s+++veei+++ld kv+ +i  +  k  ++ +v++l+ +  
  MMETSP1061-20121228|4910_1 447 SSSSSLSSSSSTVSVEEIANRLDMKVEDVILSQ-RKMRQAKSVLSLDYEYQ 496
                 68999*********************9999998.56667777888876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       273  (0.0665529); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.47u 0.13s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 2118.77
//
Query:       MMETSP1061-20121228|4912_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-05   19.0   0.2    0.00035   17.1   0.1    1.7  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   8.5e-08   0.00035     130     211 ..     139     236 ..     123     240 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 8.5e-08
   TIGR00990 130 lkekGnkayrnkdfdkaielyskal................llkedPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkya 211
                  k +Gn  +r  d  +ai+ y+ al                ++ke     sn+a c    a++e+  e +t al + +d+ k   rra+a  ++gky 
  MMETSP1061-20121228|4912_1 139 HKVQGNDHFRGHDIREAIHCYDLALssipetqrdlyvaprnQIKEIVNVLSNKAECLLRKAKYEEAAETATDALIFMNDHEKSRIRRAKAGLEVGKYD 236
                 567788888888888888888888722221111111111111333334579*********************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 1767.51
//
Query:       MMETSP1061-20121228|4915_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 447.30
//
Query:       MMETSP1061-20121228|4918_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-09   33.5   6.2    0.00014   19.7   0.0    6.4  7  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0         1   4.1e+03      21      26 ..      55      60 ..      55      62 .. 0.84
   2 ?    0.6   0.0     0.041   1.7e+02      17      29 ..      96     108 ..      85     110 .. 0.84
   3 !    5.7   0.0   0.00097         4       2      25 ..     120     143 ..     119     145 .. 0.93
   4 !   19.7   0.0   3.4e-08   0.00014       2      28 ..     151     177 ..     150     179 .. 0.92
   5 !    3.1   0.0    0.0062        26      22      33 ..     211     222 ..     207     224 .. 0.88
   6 ?   -1.3   0.0      0.16   6.6e+02       2       9 ..     226     233 ..     225     237 .. 0.85
   7 ?   -0.1   0.1     0.064   2.6e+02      17      29 ..     243     255 ..     242     256 .. 0.89

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1
   TIGR00756 21 elfdeM 26
                e+fdeM
  MMETSP1061-20121228|4918_1 55 EIFDEM 60
                689999 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.041
   TIGR00756  17 eeAlelfdeMker 29 
                 +eA++++ +M+++
  MMETSP1061-20121228|4918_1  96 DEAERILGRMEDK 108
                 89********976 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.00097
   TIGR00756   2 tyntlisglckagrveeAlelfde 25 
                 ty +++++ + + r+++++el+++
  MMETSP1061-20121228|4918_1 120 TYLCVMDAWAMRERPDKVRELLER 143
                 9*******************9975 PP

  == domain 4    score: 19.7 bits;  conditional E-value: 3.4e-08
   TIGR00756   2 tyntlisglckagrveeAlelfdeMke 28 
                 +yn li++++ ag++e A+++f+++++
  MMETSP1061-20121228|4918_1 151 VYNKLIKAYGMAGDLENAESVFRSLLS 177
                 7*********************99876 PP

  == domain 5    score: 3.1 bits;  conditional E-value: 0.0062
   TIGR00756  22 lfdeMkergivP 33 
                 lf eM+e+g++P
  MMETSP1061-20121228|4918_1 211 LFIEMEEEGFEP 222
                 788********9 PP

  == domain 6    score: -1.3 bits;  conditional E-value: 0.16
   TIGR00756   2 tyntlisg 9  
                 +yn+li++
  MMETSP1061-20121228|4918_1 226 AYNVLIRS 233
                 6*****97 PP

  == domain 7    score: -0.1 bits;  conditional E-value: 0.064
   TIGR00756  17 eeAlelfdeMker 29 
                  eA+ l+ eM+er
  MMETSP1061-20121228|4918_1 243 QEAEALLFEMIER 255
                 69********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2134.58
//
Query:       MMETSP1061-20121228|4916_1  [L=1073]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.8e-280  929.2   0.4   8.6e-156  517.9   0.0    2.0  2  TIGR01063 gyrA: DNA gyrase, A subunit
   6.1e-174  578.2   0.0   3.6e-115  383.9   0.0    4.0  4  TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit
   2.1e-149  496.7   4.6   5.8e-116  386.1   0.0    4.0  4  TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit


Domain annotation for each model (and alignments):
>> TIGR01063  gyrA: DNA gyrase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  517.9   0.0  6.3e-159  8.6e-156       3     331 ..     170     519 ..     169     525 .. 0.94
   2 !  408.8   0.5  5.9e-126    8e-123     333     798 ..     560    1067 ..     556    1069 .. 0.96

  Alignments for each domain:
  == domain 1    score: 517.9 bits;  conditional E-value: 6.3e-159
   TIGR01063   3 pvnieeelkesyldYamsvivsRalPdvRDGLkPvhRRilyamkelgltadkaykksarivgdvlgkyhPhGdsavYdalvRmaqdfslRyplvdgqGnfGsidgDapaamRYtearlakia.eelledidketvdfvanyDgsekePtvlPsrfPnLLvnGssGiavGmatnipphnlgeiidavlllidnedisi.........eellevikGPDfPtgaiilgkkgireayktGrGkvvvRakveieekek..........dreaiivtelPyqvnkakliekiaelvkekkieGisdirDesdreGiRivielk.rdavaevvlnklykltqlqvsfgvnllalvk 331
                 +v++++el++s+l+Ya+s+i++RalPd+RDGLkPvhRRil+am++l l+++ +++k+ar+vg+vlgkyhPhGd++vYdalvRmaqdfs  y l+dg+GnfGs+d D++aamRYte rl+ +a e ll ++d +tvdf an+Dg+e+ePtvlPs++P LL nGssGiavGmatnipphnl+ei+ a+ +li++e  s          ++l+ +++GPDfPtga+ilg++  r+ ++tG G+v  Ra++++ee +k           r+aiivtelPyqvnka+l+ +ia+lv++kk+eGisd+rDesdr+GiRiv+elk rda++++vl +lyk+t+lq+sf+ n lal k
  MMETSP1061-20121228|4916_1 170 HVELRSELETSFLQYALSIILGRALPDARDGLKPVHRRILFAMQQLKLNPNTSHRKCARVVGEVLGKYHPHGDMSVYDALVRMAQDFSTSYRLIDGHGNFGSVDADPAAAMRYTECRLTALAmEGLLDELDLDTVDFAANFDGNEHEPTVLPSKLPLLLLNGSSGIAVGMATNIPPHNLREIVGACKALIRKERNSKtktkkglpdDDLFGIVPGPDFPTGATILGTSDARKLFTTGNGRVLQRAVTHLEEISKkgagsaaspkTRNAIIVTELPYQVNKAALLVQIANLVNDKKLEGISDLRDESDRDGIRIVLELKqRDANPQIVLANLYKKTKLQTSFSGNFLALMK 519
                 5899**********************************************************************************************************************4569***************************************************************98765432122223333689*****************************************988777777777778****************************************************868****************************87 PP

  == domain 2    score: 408.8 bits;  conditional E-value: 5.9e-126
   TIGR01063  333 lPkvlnlkelleafvehrkevitrrtkfeLrkakerahilegllialdniDevikliresknkeeakeelver.........................fslsevqakaildlrlrrLtaleaekleeelkellekiaelkeiLaseerlleiikeeleeikeqfgdeRrteivaeeeekidiedliakeevvvtlsekgyvkrvpvsayrsqkrggkGksglklke....edfiekllvasthdkllffsnkGkvYslkvyqlpeasrtakGkpivnllelekdekitailsvkefedeeylllatkkGvvkkvslsefknirskGiiaikldeeDelisvklvkeedevlllskkGkavrfkeeevRalgraarGvrgiklkkedavvslevvk.........eesllLivtenGygkrtsieeyrlkkRggkGvksikvtekk....gkvvgalavkdedelllitsagkliRvsveevsevgrntqGvrllklkeddkvvsvelv 798 
                  +P+ ++l+e l +f+++r e+i+r+t+++L k ++r+hi++gll ald iD+vi+lir+  ++++ +e+l+++                         + ls +qa+++l l+l ++t l ++kl+ee ++l+++ a+l++iL +++ + +++ +e++++ +++g+eR+++i+++++ ++++ d++++   v+++++ gy+kr+++++++sq rg++Gk+g+   +    +d + + ++++++d+ll+++++G  Y l++yq+p++srtakG+p+ ++l++e +  +ta+l+v+ef++eeyl+latk+G++kk+ l++f++i ++G++  +l ++D+l + + ++++d++l+ s++G+a r+k++++R++gr++rGv+++kl+++d+++ ++v+          +e+++L +te+Gygkr+s +e++ k+R++ Gv++ik++e k    ++v     v+++de+l+its+g ++R++v ++  +gr+++Gv ++k+++ d+++s++lv
  MMETSP1061-20121228|4916_1  560 TPQRFTLRESLDYFLDFRFETIRRKTTHQLGKVRARIHIVDGLLLALDRIDDVIELIRTLPDQASCREALMAKppeddddekstnkkkktktknpplaLGLSRAQADSVLRLQLGQMTRLSHNKLTEERNDLESRRADLQTILDEDDAVYNLMVTEMNNLDRKYGHERKSKIIHDDDGEVQELDMVKNSRSVIVVTRGGYIKRMELKTFESQGRGTRGKRGTFAGDsssiDDEVLHCITCNDRDTLLMITQNGIAYGLRAYQVPTGSRTAKGTPLPSVLPIEIGQVVTAVLPVTEFTKEEYLVLATKQGMIKKTPLDAFETISARGLRIASLADDDKLQWCQRCTDDDDILIGSTRGMACRYKASKLRPTGRTSRGVKAMKLRDGDTIADMNVLGgdggitkpeKEEFVLCITEQGYGKRVSTKEFKAKSRATLGVIAIKFKEAKkkvdDSVSCFCIVNEDDEILVITSKGVMVRQKVAQIPCQGRSATGVMVQKINNADRITSISLV 1067
                  6999**************************************************************************************************************************************************************************999999999***********************************99875544333599999**************************************************************************************************************************************************************99888888887888*********************************988662233445566789**********************************************9987 PP

>> TIGR01061  parC_Gpos: DNA topoisomerase IV, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.9   0.0  2.7e-118  3.6e-115      11     331 ..     178     519 ..     170     526 .. 0.90
   2 !   37.2   0.0   1.9e-13   2.6e-10     333     404 ..     560     631 ..     555     634 .. 0.96
   3 !  137.2   0.0   1.1e-43   1.5e-40     408     733 ..     660    1001 ..     641    1008 .. 0.87
   4 !   24.2   0.4   1.6e-09   2.3e-06     601     690 ..     967    1063 ..     959    1073 .] 0.44

  Alignments for each domain:
  == domain 1    score: 383.9 bits;  conditional E-value: 2.7e-118
   TIGR01061  11 gesfgkyakyiiqdralPdirdGlkPvqrrilyamsklgltfdkpykksaktvGeviGkyhPhGdssiyeamvrmsqdWknrevlvemhGnnGsidGdnaaamrytearlskiase.llkdidkkvvefvpnfddsekePtvlPalfPnllvnGatGiaaGyatdipPhnlnevldalilri...dqPdcsv......dkllelvkgPdfPtGgeiqgedeikkayetGkGkviirakieievlkng..........keqiviteiPyevnkanlvkkieeiivdkkvagieevrdesdrkGlriiielkk.dlnaekvlnylykktdlqinynlnmvaian 331
                   sf +ya  ii  ralPd+rdGlkPv rril+am++l l ++++++k+a+ vGev+GkyhPhGd s+y+a+vrm+qd+     l++ hGn Gs+d d+aaamryte+rl+ +a+e ll ++d ++v+f+ nfd  e ePtvlP+ +P ll+nG++Gia G at+ipPhnl e++ a    i    + +++       d+l+ +v+gPdfPtG++i g+ + +k + tG+G+v+ ra +++e +  +          ++ i++te+Py+vnka l+ +i +++ dkk++gi+++rdesdr+G+ri++elk+ d+n + vl+ lykkt+lq ++  n++a+ +
  MMETSP1061-20121228|4916_1 178 ETSFLQYALSIILGRALPDARDGLKPVHRRILFAMQQLKLNPNTSHRKCARVVGEVLGKYHPHGDMSVYDALVRMAQDFSTSYRLIDGHGNFGSVDADPAAAMRYTECRLTALAMEgLLDELDLDTVDFAANFDGNEHEPTVLPSKLPLLLLNGSSGIAVGMATNIPPHNLREIVGACKALIrkeRNSKTKTkkglpdDDLFGIVPGPDFPTGATILGTSDARKLFTTGNGRVLQRAVTHLEEISKKgagsaaspktRNAIIVTELPYQVNKAALLVQIANLVNDKKLEGISDLRDESDRDGIRIVLELKQrDANPQIVLANLYKKTKLQTSFSGNFLALMK 519
                 6799**************************************************************************************************************876999******************************************************9876555511144455542233335699*************************************99877543233344444489**************************************************96489**********************999865 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 1.9e-13
   TIGR01061 333 tPilvgllsildayikhskevilnrskyelekakkrleiveGlikaisildeviklirasedksdakeklia 404
                 tP++ +l   ld +++++ e i ++++++l k++ r++iv+Gl+ a++ +d+vi+lir+  d++  +e l+a
  MMETSP1061-20121228|4916_1 560 TPQRFTLRESLDYFLDFRFETIRRKTTHQLGKVRARIHIVDGLLLALDRIDDVIELIRTLPDQASCREALMA 631
                 89999***************************************************************9986 PP

  == domain 3    score: 137.2 bits;  conditional E-value: 1.1e-43
   TIGR01061  408 ftenqaeaivslrlyrltntdivelkeeeeelekkikeleeiiasekarkkllkkklkelkkkfaqerrskledkikkikieeeelieeedlyvvvtkdGyikrtskrsfaaskleelglkd.........ddillaqtiinttdklllvtskgnlinlpvhkladirwkdlgehlskkitldenetivavevlnefdvdeailvlasklglvkrieltelkikrskavlilklkdedelisavltkkeklivlvsklgyallflveevnvvgakaaGvkgmklkeddevksvlil........easeslv.lltqegsvkrlsiselkvtsrakravkllelk 733 
                  +   qa++++ l+l ++t+    +l ee+++le + + l++i+ ++ a+++l+  ++++l +k+++er+sk+++  ++ +++e +++++    +vvt+ Gyikr+  ++f++      g++          dd +l+  + n  d+ll++t+ g    l ++++++ ++   g  l   + ++  + + av ++ ef  +e +lvla+k g++k++ l  +++  ++ + i++l d+d+l   +  +++++i++ s +g+a +++   +   g+ + Gvk+mkl++ d++  + +l        +++e++v  +t++g  kr+s +e+k+ sra  +v  ++ k
  MMETSP1061-20121228|4916_1  660 LSRAQADSVLRLQLGQMTRLSHNKLTEERNDLESRRADLQTILDEDDAVYNLMVTEMNNLDRKYGHERKSKIIHD-DDGEVQELDMVKNSRSVIVVTRGGYIKRMELKTFESQGRGTRGKRGtfagdsssiDDEVLHCITCNDRDTLLMITQNGIAYGLRAYQVPTGSRTAKGTPLPSVLPIEIGQVVTAVLPVTEFT-KEEYLVLATKQGMIKKTPLDAFETISARGLRIASLADDDKLQWCQRCTDDDDILIGSTRGMACRYKASKLRPTGRTSRGVKAMKLRDGDTIADMNVLggdggitkPEKEEFVlCITEQGYGKRVSTKEFKAKSRATLGVIAIKFK 1001
                  5678********************************************************************987.6789*******************************97554444432111222233899**************************************************************99.*******************************************************************************************977654222222233444555157888999**************9887554433 PP

  == domain 4    score: 24.2 bits;  conditional E-value: 1.6e-09
   TIGR01061  601 ilvlasklglvkrieltelkikr..skavlilklkde....delisav.ltkkeklivlvsklgyallflveevnvvgakaaGvkgmklkeddevks 690 
                   ++ ++  g  kr+  +e+k+k   +  v ++k+k+     d+ +s + + +++++i++++++g +++ +v ++++ g+ a+Gv + k+ + d ++s
  MMETSP1061-20121228|4916_1  967 FVLCITEQGYGKRVSTKEFKAKSraTLGVIAIKFKEAkkkvDDSVSCFcIVNEDDEILVITSKGVMVRQKVAQIPCQGRSATGVMVQKINNADRITS 1063
                  3334444555555555555554433333344444433111122333331223345555555555555555555555555555555555555555555 PP

>> TIGR01062  parC_Gneg: DNA topoisomerase IV, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.1   0.0  4.3e-119  5.8e-116       4     324 ..     171     513 ..     168     521 .. 0.93
   2 !   36.0   0.0   3.5e-13   4.8e-10     334     392 ..     561     619 ..     557     633 .. 0.87
   3 !   64.9   0.0     6e-22   8.2e-19     404     646 ..     659     915 ..     649     959 .. 0.78
   4 !    9.7   0.2   3.1e-05     0.042     586     674 ..     964    1059 ..     892    1072 .. 0.67

  Alignments for each domain:
  == domain 1    score: 386.1 bits;  conditional E-value: 4.3e-119
   TIGR01062   4 ldlrefleeaylnyslyvimdralpfigdGlkpvqrrlvyamselgleasakykksarvvGdvlGkyhphGdsavyealvllaqpfsyryplvdGqGnfGaiddpksfaamrytesrlskise.llleelgkgtvdfrsnfdgtllepkilparlpnlllnGttGiavGmatdipphnlreladaalalid...npka....gl..ddvleivkGpdfpteaeiidkkeeirkiyetGrGsvrvrarwkkedg...............eivisalpyqvskskvieqiaiqlkdkklplvedirdesdhediirvvivprsnrvdtdavmeslfaltdleksyrln 324
                 ++lr+ le ++l+y+l++i+ ralp+ +dGlkpv+rr+++am +l+l++++ ++k+arvvG+vlGkyhphGd +vy+alv++aq+fs  y l+dG GnfG++d  + +aamryte rl+ +++  ll+el+ +tvdf +nfdg + ep++lp++lp lllnG+ GiavGmat+ipphnlre++ a  ali    n k+    gl  dd++ iv Gpdfpt+a i+ + ++ rk+++tG G v  ra+ + e+                +i++++lpyqv+k+ ++ qia++++dkkl  ++d+rdesd  d ir+v++ +++  ++++v+++l++ t+l+ s+  n
  MMETSP1061-20121228|4916_1 171 VELRSELETSFLQYALSIILGRALPDARDGLKPVHRRILFAMQQLKLNPNTSHRKCARVVGEVLGKYHPHGDMSVYDALVRMAQDFSTSYRLIDGHGNFGSVDA-DPAAAMRYTECRLTALAMeGLLDELDLDTVDFAANFDGNEHEPTVLPSKLPLLLLNGSSGIAVGMATNIPPHNLREIVGACKALIRkerNSKTktkkGLpdDDLFGIVPGPDFPTGATILGT-SDARKLFTTGNGRVLQRAVTHLEEIskkgagsaaspktrnAIIVTELPYQVNKAALLVQIANLVNDKKLEGISDLRDESD-RDGIRIVLELKQRDANPQIVLANLYKKTKLQTSFSGN 513
                 789999*************************************************************************************************9.9**************986269********************************************************99999998622233331122567689***************9976.678******************99999999**************************************************6.6899**************************9998755 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 3.5e-13
   TIGR01062 334 pavknlleilqeflvfrrdivirrltyrlekvlkrleileglliaflnldevieiiree 392
                 p+   l e l+ fl+fr ++++r++t++l kv+ r++i++gll+a   +d+vie+ir  
  MMETSP1061-20121228|4916_1 561 PQRFTLRESLDYFLDFRFETIRRKTTHQLGKVRARIHIVDGLLLALDRIDDVIELIRTL 619
                 556678899************************************************74 PP

  == domain 3    score: 64.9 bits;  conditional E-value: 6e-22
   TIGR01062 404 klseiqaeailnlrlrslakleekkikdeqselekeraqlekilkserklnqlvkkeikadakkygdarrssleereeakavsesdlipkepvtiilskmGwvrs..akGhdidlkslkyk....aGdse......kaavkgksndkvviidskGrsyaldalslssa..rgqGepltgkllldiGatienilvese...dqklllasdaGkGflvkfndliarnkaGkalislpenakvlaplvveddsdlvvaiteag 646
                 +ls  qa+ +l l+l ++++l  +k+ +e+++le +ra l++il+++  +++l+  e+++  +kyg++r+s++   ++  +v e d++ +    i++++ G+++   +k  + + ++ + k    aGds       +  ++++  d++++i  +G  y l a +++ +   ++G pl   l ++iG+ ++ +l   e   ++ l+la++ G       +   + +  G  + sl ++ k   ++  +dd d+++  t  +
  MMETSP1061-20121228|4916_1 659 GLSRAQADSVLRLQLGQMTRLSHNKLTEERNDLESRRADLQTILDEDDAVYNLMVTEMNNLDRKYGHERKSKIIHDDD-GEVQELDMVKNSRSVIVVTRGGYIKRmeLKTFESQGRGTRGKrgtfAGDSSsiddevLHCITCNDRDTLLMITQNGIAYGLRAYQVPTGsrTAKGTPLPSVLPIEIGQVVTAVLPVTEftkEEYLVLATKQGMIKKTPLDAFETISARGLRIASLADDDKLQWCQRCTDDDDILIGST--R 915
                 7999*********************************************************************98766.5799********************8623688888888888873333466651111114567888899*******************987324789*****************996543222667888988775444444444445556889999999999999999999988775544..3 PP

  == domain 4    score: 9.7 bits;  conditional E-value: 3.1e-05
   TIGR01062  586 edqklllasdaGkGflvkfndliarnkaGkalisl..penak....vlaplvveddsdlvvaiteagrllvfpvddlpelsk.GkGnklirikaan 674 
                  +++ +l  ++ G+G  v+ ++  a+++a   +i++   e  k     +++  + ++ d +++it+ g ++  +v ++p   +   G+ +++i++a+
  MMETSP1061-20121228|4916_1  964 KEEFVLCITEQGYGKRVSTKEFKAKSRATLGVIAIkfKEAKKkvddSVSCFCIVNEDDEILVITSKGVMVRQKVAQIPCQGRsATGVMVQKINNAD 1059
                  2344677899*****************9888877622565542222578999*9*99*********************765416899999999544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.62u 0.15s 00:00:00.77 Elapsed: 00:00:00.50
# Mc/sec: 2832.49
//
Query:       MMETSP1061-20121228|4920_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 960.59
//
Query:       MMETSP1061-20121228|4917_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.65u 0.17s 00:00:00.82 Elapsed: 00:00:00.47
# Mc/sec: 2114.63
//
Query:       MMETSP1061-20121228|4919_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-83  276.0   0.0    8.5e-83  275.3   0.0    1.2  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    6.1e-20   69.2   0.0    7.1e-14   49.5   0.0    2.4  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    2.1e-09   34.9   0.0    4.1e-08   30.7   0.0    2.2  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    0.00024   18.8   0.0     0.0015   16.2   0.0    2.1  2  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.3   0.0   8.3e-86   8.5e-83       2     224 ..     126     347 ..     125     357 .. 0.98

  Alignments for each domain:
  == domain 1    score: 275.3 bits;  conditional E-value: 8.3e-86
   TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpeldekderspkkdrryaklkkkelPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtgiPlvyeldeelkpvkk 224
                 +l ++rhG+s Wn+ n+f GW+d  l++ G+ ea+ agk+lk++++ fd ++tsll+r i+t n+vl e++q+++pv+k Wrlner yG+l G++k+et++ +G+eqvk wrrs+d +Pp++  +++++p +d+ry+++k   +P+teslk+t +r   yw+d+iapel++gk++l+v h n lr+l+  le++s+e+i++l +P ++Pl y lde+lkp+++
  MMETSP1061-20121228|4919_1 126 NLCFLRHGQSTWNRDNRFIGWTDTPLTDDGVLEARVAGKMLKNSGILFDEVHTSLLRRCIRTTNLVLMEVEQEYIPVHKHWRLNERNYGELVGKNKKETVKLHGKEQVKRWRRSYDEPPPPMCDHHKYHPARDPRYRQMKD-LIPKTESLKETKARSSVYWDDVIAPELRAGKTLLVVGHENNLRSLIMRLEGISKEDIINLCLPRAVPLAYRLDENLKPLDR 347
                 5889**************************************************************************************************************************************987.9****************************************************************************9876 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0     7e-17   7.1e-14       1     111 [.     127     245 ..     127     257 .. 0.89
   2 !   17.5   0.0   4.4e-07   0.00045     110     166 ..     267     326 ..     250     332 .. 0.87

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 7e-17
   TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrelAella...eklklpiekddrLrEmdfGdwEgksydeisekyp..eldawakdlaharv 111
                 l ++RHg+  +n+ +++ G tD+pL+++g  +a+ + + l  +   fd+v++S l+Rc ++ +l+    e++ +p++k+ rL+E ++G+  gk+ +e ++ +   ++++w +++ +  +
  MMETSP1061-20121228|4919_1 127 LCFLRHGQSTWNRDNRFiGWTDTPLTDDGVLEARVAGKMLknSGILFDEVHTSLLRRCIRTTNLVLmevEQEYIPVHKHWRLNERNYGELVGKNKKETVKLHGkeQVKRWRRSYDEPPP 245
                 5799**********************************99556688*****************9997777788899********************99999887778888887766555 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 4.4e-07
   TIGR03162 110 rvpgGEsvadfsqRveefleelake...ekenvlivtHgGvirallahllglpleqllsi 166
                  +p+ Es+++ ++R +  ++++++    +++++l+v+H   +r l+++l+g++ e+++++
  MMETSP1061-20121228|4919_1 267 LIPKTESLKETKARSSVYWDDVIAPelrAGKTLLVVGHENNLRSLIMRLEGISKEDIINL 326
                 5799*****************9988788899*********************99988775 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     4e-11   4.1e-08       2      97 ..     127     226 ..     126     237 .. 0.85
   2 ?    1.8   0.0     0.028        29     113     164 ..     268     316 ..     264     366 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 4e-11
   TIGR03848   2 vllvrhgrstantaktLaGrtpGveLderGreqaaalaerla..dlpiaaivssPlercretveaiaear...glevavderltevdYGdWtGrelkeLak 97 
                 + ++rhg+st n  +++ G+t+   L++ G   a+ + + l+  ++  +++ +s l+rc +t + ++ +     ++v+ + rl+e +YG+  G++ ke +k
  MMETSP1061-20121228|4919_1 127 LCFLRHGQSTWNRDNRFIGWTD-TPLTDDGVLEARVAGKMLKnsGILFDEVHTSLLRRCIRTTNLVLMEVeqeYIPVHKHWRLNERNYGELVGKNKKETVK 226
                 5689*****************7.89*********999999862268889***************998776333556677889***********99887665 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.028
   TIGR03848 113 fPgGealaevqaravaavreldarleeehgpdavwvavshgDviksvladal 164
                  P+ e+l+e++ar+      +d  ++ e  ++++ ++v h + ++s++    
  MMETSP1061-20121228|4919_1 268 IPKTESLKETKARSSV---YWDDVIAPELRAGKTLLVVGHENNLRSLIMRLE 316
                 5899999999999753...688999999999999999999999999886655 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.5e-06    0.0015       3      67 ..     127     195 ..     125     205 .. 0.84
   2 ?   -0.6   0.0      0.23   2.3e+02      99     118 ..     296     315 ..     284     327 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.5e-06
   TIGR00249   3 lylmrHGeAkekaa....sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeivadal 67 
                 l  +rHG+   +        ++ +Lt +G+ ea+  +++Lk+ g+ +d + +S l+R  +t + v  ++
  MMETSP1061-20121228|4919_1 127 LCFLRHGQSTWNRDnrfiGWTDTPLTDDGVLEARVAGKMLKNSGILFDEVHTSLLRRCIRTTNLVLMEV 195
                 66789999887665456556789***********************************99998876555 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.23
   TIGR00249  99 vksvllvsHlPllgelvaeL 118
                  k++l+v+H  +l  l+  L
  MMETSP1061-20121228|4919_1 296 GKTLLVVGHENNLRSLIMRL 315
                 47888999988888777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2193.05
//
Query:       MMETSP1061-20121228|4923_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 2183.82
//
Query:       MMETSP1061-20121228|4925_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.008   11.7   9.8     0.0099   11.4   6.8    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   6.8   2.4e-06    0.0099     365     545 ..      13     189 ..       7     194 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.4e-06
   TIGR02168 365 aeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaal 545
                 ae+e+ ++r+e + +++ + ++ +a+l+e+l++ +  l +  ++ eql+ r+    +e++++ ++l+  +  l++l+    ++ +el+ l +  +++ee  +  +++ ee +q +++a+ e++ +++rle+l++  e  ++++++++a + ++++ + +  +   +++ + +ye+ + aa 
  MMETSP1061-20121228|4925_1  13 AEQEARKAREERAAAAAIAREKHLAKLRERLSKRKGILDS-LDRAEQLTCRLLTIAAETTSALQDLNFSSPTLSQLSVAYRSTLQELHPLLT--NNTEELIKPYQNHTEETKQSMYAARVEMRLARERLEVLKTFAELERDENNAASAGMXHEHEYQ-YKYQFEYQYQYQYQYESPLFAAY 189
                 4556666666666666666666677776666665555544.456778888877777777777777777777777777777777777776655..345666777888999999********************************9999999999966.57777778888888877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 989.92
//
Query:       MMETSP1061-20121228|4926_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.056   11.5   0.9        1.5    6.8   0.0    2.6  2  TIGR04042 MSMEG_0570_fam: MSMEG_0570 family protein


Domain annotation for each model (and alignments):
>> TIGR04042  MSMEG_0570_fam: MSMEG_0570 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0   0.00038       1.5      37      87 ..      53     101 ..      42     105 .. 0.86
   2 ?    2.5   0.1    0.0087        36      42      86 ..     108     151 ..     105     158 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00038
   TIGR04042  37 adfversreaLeeAserVrakyGfacssaadqlakieaaaarfeespdakv 87 
                 +  v r+ +aLe Ase  r    ++ ++ +++ a +e+a  ++  ++da+v
  MMETSP1061-20121228|4926_1  53 EAAVWRAPMALEYASEELRSDLSIVLTAVKEDGAALEHASGAL--RNDARV 101
                 55677999******************************99999..555555 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0087
   TIGR04042  42 rsreaLeeAserVrakyGfacssaadqlakieaaaarfeespdak 86 
                 +  +aLe Ase  ++   ++ ++ +++ a++e a +++++ ++++
  MMETSP1061-20121228|4926_1 108 QNYRALEYASEDLKNDATVVLAAVQQNYASLEYASEELKT-SNEE 151
                 5668999999999999999999999999999998888844.4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1169.90
//
Query:       MMETSP1061-20121228|4927_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 304.15
//
Query:       MMETSP1061-20121228|4924_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 2417.05
//
Query:       MMETSP1061-20121228|4931_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 845.93
//
Query:       MMETSP1061-20121228|4932_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1078.67
//
Query:       MMETSP1061-20121228|4936_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1061-20121228|4929_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-24   82.1   0.0    2.1e-19   67.4   0.0    2.7  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    5.4e-22   75.8   0.0    5.5e-10   36.1   0.0    2.9  3  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    7.2e-22   75.6   0.0    1.5e-20   71.2   0.0    2.6  1  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    1.1e-18   65.2   0.0    4.6e-13   46.6   0.0    3.2  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    8.1e-14   48.6   0.0    4.5e-13   46.1   0.0    2.1  1  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.9e-12   44.2   0.0    1.2e-11   41.5   0.0    2.1  1  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    7.4e-05   19.5   0.0      0.002   14.8   0.0    2.5  3  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    0.00013   18.2   0.0       0.17    8.0   0.0    3.0  3  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    0.00018   18.1   0.0    0.00038   17.0   0.0    1.5  2  TIGR02316 propion_prpE: propionate--CoA ligase
    0.00095   15.6   0.0     0.0017   14.8   0.0    1.3  1  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   6.5e-05     0.027       1      50 [.     106     161 ..     106     168 .. 0.83
   2 !   67.4   0.0   5.1e-22   2.1e-19      99     402 ..     253     567 ..     235     572 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.5e-05
   TIGR01733   1 tYreLderanrlAraLke....agg..vrpgdrVavllersvelvvailavlkaGa 50 
                 tY+e + +++++A++L +    +g   ++p+d+Va++++ ++e vv++++++++G 
  MMETSP1061-20121228|4929_1 106 TYGEAEMASSAVAKWLTAptssSGAvvCQPNDIVAIFMPSGCEFVVSLFGLIRCGV 161
                 89999999999999998533322223489***********************9995 PP

  == domain 2    score: 67.4 bits;  conditional E-value: 5.1e-22
   TIGR01733  99 leekaaedasaeeaaeakskpddlayviyTSGStGkPKgVlvehrslvnllaslarryelseedrvlqfsslaFDlsveeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeeasee.lkslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtv.eevsadeeseee......pvpiGrpl..anvrlyvldea...lrpvpvgvvGELy..igGa...gvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKirGfRielgEieaalaelp 402
                 +++k+++++++ee+++  s+ d+++ +iyTSG+tG PK+  ++h  + +     ++   l+++dr+++  +l++   +   ++a l+ ++  v++++ +   +++ ++lla++ +t ++ +  +++ l+++++++  ++++l ++ G  +++e    +r+r++   +i  YG TE +v +   + +++  +           +piG     + +  ++ d++     p++++++GEL+  i+ +       GY n +  t+++ v++  +++   r +r+GDl r +  G l f+ R+ +  + +G  +  +E+  a+++++
  MMETSP1061-20121228|4929_1 253 QHQKQQQQKEEEEQQQPSSRWDETCLYIYTSGTTGLPKASKMNHMRIWSAGCVGKKLCRLRPSDRLYCPLPLHHTSGLAIGLGACLQMGCSTVIRPKFS--VRHFSRDLLAHE-CTGAQYIGEMARYLTSASANKlDSKVKLRFALGNGMPPEIWIPFRNRYNIDLVIEFYGSTEGNVNMVNgTGMAPG-ACGIVppgfgwIYPIGIFKydTDTGELLRDPKtglCVPAAPNEPGELLglIKQDdpsRRFDGYTN-DTATKSKIVDNVCKTG--DRYFRSGDLLRQDRCGFLYFCDRVGETFRWKGENVSTSEVARAVLDCS 567
                 33444444444445555578999**************************99999999999**************9877766666665556666666655..36899******9.****************997776779***********************966899**********99763433333.3332135677778888655114566689999965556778999****64476551115677****.678999****987765..69**************************************99988665 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.034        14      25      93 ..     104     179 ..      82     182 .. 0.72
   2 !   34.1   0.0   5.4e-12   2.2e-09     146     313 ..     257     424 ..     239     451 .. 0.78
   3 !   36.1   0.0   1.3e-12   5.5e-10     393     515 ..     518     650 ..     466     652 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.034
   TIGR03098  25 tltyaaLseevkalasglka.......lglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayil 93 
                  +ty + + +  a+a++l+a       ++ +  + vai+++   e v++lf+  + g     +n  L+ + +a+ l
  MMETSP1061-20121228|4929_1 104 RMTYGEAEMASSAVAKWLTAptsssgaVVCQPNDIVAIFMPSGCEFVVSLFGLIRCGVRAALVNTGLRGNSLAHAL 179
                 567777777777777777641111111566778899*********************9999999988888887765 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 5.4e-12
   TIGR03098 146 eklkaleeaaakvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredDrllavLPlsfDyGln.qlttaflvGatvvlldyllpkDvlkavekekitglaavPPlWlqLakldwpeeaae.slRyltnsGGalpkavlarlRkllpeaklylmYGLte 313
                 ++ +  ee++++ +   d+    +YtsG tG Pk+  + h  ++       +  +lr+ Drl   LPl    Gl   l +++++G + v+   + ++   + +  ++ tg   +  +   L+++  ++ +++ +lR+    G  +p ++   +R++     +   YG te
  MMETSP1061-20121228|4929_1 257 QQQQKEEEEQQQPSSRWDETCLYIYTSGTTGLPKASKMNHMRIWSAGCVGKKLCRLRPSDRLYCPLPLHHTSGLAiGLGACLQMGCSTVIRPKFSVRHFSRDLLAHECTGAQYIGEMARYLTSASANKLDSKvKLRFA--LGNGMPPEIWIPFRNRYNIDLVIEFYGSTE 424
                 233333333333333344555679*******************9855555555699******************84588999********999999999999999999999999999999988877765544267764..455588888888888888888888888887 PP

  == domain 3    score: 36.1 bits;  conditional E-value: 1.3e-12
   TIGR03098 393 ltelavfsGDlvrrDeeGflyfvgRrdemiktsGyRvsPteveevll.......atglvaeavvlgvp.dpelGqaivlvvv..esdkeeldkkellkelraelPaymvPakielrealprnanGkiDrkala 515
                 + ++   sGDl r+D  Gflyf  R  e  +  G  vs  ev  ++l       atg  aeavv gv+ + + G a ++ vv  e + +e  +++l ++l+ elP y +P  i ++ ++ +++  k  ++ l+
  MMETSP1061-20121228|4929_1 518 TGDRYFRSGDLLRQDRCGFLYFCDRVGETFRWKGENVSTSEVARAVLdcsekggATGSFAEAVVYGVEvEGHPGRAGMATVVltEGGADEPWQDSLWHSLQSELPRYAQPLFIRIKTQIEKTSTQKYKKTKLQ 650
                 4555667***********************************99887444444468899*******9735567776443333226666777899****************************99999888776 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   3.7e-23   1.5e-20      30     507 ..     104     651 ..      99     652 .. 0.72

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 3.7e-23
   TIGR02262  30 slsygeleaevrrvaaalr.......rlGvkreervllvlldtvdfpivflGairaGivpvalntlltaddyaylle.......d..........srarvvlvseellpvlkevl..aklpdleklvvvgak....p.agekqlaella........teseqekaaatkaddpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlglreddvvfsaaklffayGlGnalifplsvGatavlmaerptpdavfdrlrrvkpt..ifygvptlyaamladpelkaed.ekrlrlctsaGealpeevGkrwkarfGvdil.dGvGstellhiflsnlpddvkyGtsGkpvpG....yrlrlvd...dgge...........dvadgevGell..v..sgpssaagywnnreksratfeGewtrsGdkyvrndd.......GsytyaGrtddllkvsGiyvspfevesaliahe.......avleaavvgaededglik.pkafvvlrsgadidealeeelkehvkdklapykyprwievvddlpktatGkiqrfklre 507
                 +++yge e +++ va+ l        ++  ++++ v++ +  + +f + ++G ir+G+   ++nt l  +  a+ l+       +          sr r+vlvs +l p+l+++   ++lp+  ++v +g      p + +k +a l          +e+e+++  +++ d+++ ++y+sG+tG pk     h   ++ a   ++k   lr +d  +    l  + Gl  +l   l +G ++v+ ++        d l + + t   + g     a  l+  + ++ d +++lr +   G+ +p e+   +++r+ +d++ +  Gste + + + n ++ +  G++G   pG    y + + +   d+ge           + a +e+Gell  +  + ps     + n   +++  + +  ++Gd+y r+ d       G   ++ r  + ++  G  vs  ev  a++  +       +  ea v g+e e +  +   a vvl +g  +de  +++l + ++++l  y  p +i++  ++ kt+t k ++ kl++
  MMETSP1061-20121228|4929_1 104 RMTYGEAEMASSAVAKWLTaptsssgAVVCQPNDIVAIFMPSGCEFVVSLFGLIRCGVRAALVNTGLRGNSLAHALTtaldegqEgsssssssssSRVRAVLVSPDLKPLLESLQegGQLPSSIDIVECGPGceldPwTETKRFAYLGRqhqkqqqqKEEEEQQQPSSRWDETCLYIYTSGTTGLPKASKMNHMR-IWSAGCVGKKLCRLRPSDRLYCPLPLHHTSGLAIGLGACLQMGCSTVIRPKFSVRHFSRDLLAH-ECTgaQYIGE---MARYLTSASANKLDsKVKLRFA--LGNGMPPEIWIPFRNRYNIDLViEFYGSTE-GNVNMVNGTG-MAPGACGIVPPGfgwiYPIGIFKydtDTGEllrdpktglcvPAAPNEPGELLglIkqDDPSRRFDGYTNDTATKSKIVDNVCKTGDRYFRSGDllrqdrcGFLYFCDRVGETFRWKGENVSTSEVARAVLDCSekggatgSFAEAVVYGVEVEGHPGRaGMATVVLTEGG-ADEPWQDSLWHSLQSELPRYAQPLFIRIKTQIEKTSTQKYKKTKLQD 651
                 678888888888877776522221224667999*********************************9999988887533333330333333332268899***********98753389999999999886543433456666665432111100002233344556788*****************99988875.7899999*****************************************9887666555555544.4331033344...4444544444443337777776..58889***************753788***9.6677777665.566888876676333333333222124444222221122224577899**9544422678887776777888999999**********98655444445588899***********************997541222222468999999998887765157899999888.8999*************************************999975 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   1.1e-15   4.6e-13      23     261 ..     135     426 ..     106     433 .. 0.77
   2 !   12.9   0.0     2e-05    0.0081     326     438 ..     521     645 ..     500     649 .. 0.76

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 1.1e-15
   TIGR01923  23 kgdvvallaenslelvllllallllgveiallntrLtekelttql....kelkvellltdslleeke..dlqaisldeleaeae...........................................aeevslsasfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWLlsLPlyHvsGlsi.lfrallegatlkivdkfaaeqllesianekvthiSlVptqLkrlleesssepes..lrkiLLGGsaipaplieeaqekglpi.yksyGmTEta 261
                  +d+va+++++ +e v++l+ l++ gv++al+nt L  + l++ l    +e +      +s+ + ++   l++ +l+ l  + +                                           +ee++ + s + d++   i+TSg+tG pKa +  + ++       ++   + +sd+    LPl+H sGl+i l  +l  g + +i  kf++  +  ++  ++ t +  +  + + l  +s +++ s    ++ LG +  p   i    ++++++  + yG+TE  
  MMETSP1061-20121228|4929_1 135 PNDIVAIFMPSGCEFVVSLFGLIRCGVRAALVNTGLRGNSLAHALttalDEGQEGSSSSSSSSSSRVraVLVSPDLKPLLESLQeggqlpssidivecgpgceldpwtetkrfaylgrqhqkqqqqkEEEEQQQPSSRWDETCLYIYTSGTTGLPKASKMNHMRIWSAGCVGKKLCRLRPSDRLYCPLPLHHTSGLAIgLGACLQMGCSTVIRPKFSVRHFSRDLLAHECTGAQYIGEMARYLTSASANKLDSkvKLRFALGNGMPPEIWIPFRNRYNIDLvIEFYGSTEGN 426
                 5799*******************************99877655541000455555554444444433223444444444444448999*******************99999999999999998865333335677889********************9999988877777888899********************66789999**************************999988766665555554332103356788888888888888889998525678999865 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2e-05
   TIGR01923 326 GwlktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlkslpe.......vqeavvvpkeDsef.GqvPvayikses....eiskakltaylkeklaKyKvPiafekldelpkeasgKil 438
                  ++++gDl + d+ gfl+  dR  + +   GEN+   e+ +++   +e        +eavv ++e + + G+  +a +++ +    e  +  l  +l+++l +y  P  +    + +k+++ K +
  MMETSP1061-20121228|4929_1 521 RYFRSGDLLRQDRCGFLYFCDRVGETFRWKGENVSTSEVARAVLDCSEkggatgsFAEAVVYGVEVEGHpGRAGMATVVLTEggadEPWQDSLWHSLQSELPRYAQPLFIRIKTQIEKTSTQKYK 645
                 49**************************************9998876433333337889999988665447777777777666667778888999999999999999766555555666655655 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.1e-15   4.5e-13      86     595 ..     101     643 ..      45     651 .. 0.72

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1.1e-15
   TIGR02188  86 dsrkltYaellrevcrlanvlke....lG...vkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivda.......eaklvitadeglRggkvielkkivdealekaeesvekv.lvvkrtgeevaewkegrDvwweelvek......easaecepekldsedplfiLYtsGstGkPkGvlhttgGylllaaltvkyvfdikdedifwCtaDvGWvtGhsYivygPLanGattllfegvptypdasrfweviekykvtifYtaPtaiRalmklgeelvkkhdlsslrvlgsvGepinpeaweWyyevvGkekcpivdtwWqtetGgilitp...lpgvatelkpgsatlPlfGieaevvd.eegkeveeeeeggvLvi.kkp.wPsmlrtiyg..deerfvetYfkklkg..............lyftGDgarrdkdGyiwilGRvDdvinvsGhrlgtaeiesalvshe.......avaeaavvgvpde.ikgeaivafvvlkegveedeeelekelkklvrkeigpiakpdkilvveelPktRsGk 595
                  + ++tY e    ++ +a+ l++     G    +  d vai++p   e v+ + +  R G+  ++v +G   ++la+ ++ a       ++    ++   +R   v +  k   e+l++  +  +++ +v    g e+ +w+e + +++    ++      e++++ +p +   ++   ++YtsG+tG Pk    +    +  a +  k +  ++++d+ +C   +    G +  + + L +G +t++    p+++ ++   +++ +      Y      R l+ ++ + ++    s++++  + G+ + pe w  +++    +   +++ +  te    +++     pg++  + pg      +Gi     d ++g+ +++ ++g  L++   p  P+ l ++ +  d++r ++ Y++++ +              ++ +GD  r+d+ G+++   Rv +  +  G +++t+e+  a+++ +       + aea v gv+ e   g a +a vvl+eg + +    +++l + +++e+  +a+p  i++ +++ kt   k
  MMETSP1061-20121228|4929_1 101 GRARMTYGEAEMASSAVAKWLTAptssSGavvCQPNDIVAIFMPSGCEFVVSLFGLIRCGVRAALVNTGLRGNSLAHALTTAldegqegSSSSSSSSSSRVRAVLVSPDLKPLLESLQEGGQLPSSIdIVECGPGCELDPWTETKRFAYLGRQHQkqqqqkEEEEQQQPSSRW-DETCLYIYTSGTTGLPKASKMNHM-RIWSAGCVGKKLCRLRPSDRLYCPLPLHHTSGLAIGLGACLQMGCSTVI---RPKFSVRHFSRDLLAHECTGAQYIGE-MARYLTSASANKLD----SKVKLRFALGNGMPPEIWIPFRNRYNID--LVIEFYGSTEGNVNMVNGtgmAPGACGIVPPGFGWIYPIGIFK--YDtDTGELLRDPKTG--LCVpAAPnEPGELLGLIKqdDPSRRFDGYTNDTATkskivdnvcktgdrYFRSGDLLRQDRCGFLYFCDRVGETFRWKGENVSTSEVARAVLDCSekggatgSFAEAVVYGVEVEgHPGRAGMATVVLTEGGADEP--WQDSLWHSLQSELPRYAQPLFIRIKTQIEKTSTQK 643
                 4678999999999999999997533233433246789********************************9988887766543221111133444444455555555543334445677666533333155566788999****998877433332111011222223333333.4455567**********8654433.3556667789999***********************************9...58888877777777665555666654.44777777766665....77888889*************9986544..5678889999888888641113454444444544433344443..453556666655553..55513332699999997533678999999988766678899999999978889**************************************97542222222689******986625699*********9988655..8*****************************98766 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.0     3e-14   1.2e-11     179     539 ..     261     648 ..      64     650 .. 0.67

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 3e-14
   TIGR03205 179 gaakpaewpavkaddvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfdvaavlrdieekrat..vfpgvptmwialandpslekrdlsslatigsggaplpvevaklferkvglklk.sgwgmtet...cspgtghple.gpdkpgsiglmlp.gi...eldvvs.lddpkkvl..p..pgevgel..rirgpnvtr...gywnraeesae.....afvgdr.fltgdigyvdrdgyfflvdrkkdmiisggfnvypqmieqaiye.......lpavqevivigip.dqyrgeaakafvklreg.akpfsldelraflagklgkhelpvavelvdelprtsvgklsrhe 539
                 +  +  + p+ + d+ +l  yt gttglpk + + h  + sa ++         +     +r+ c lpl h   l++ l  +l+ g    +  +f v    rd+  + +t   + g  + +++ a+  +l+++      +  + g  +p e+   f  + +  l    +g te       gtg  +      p   g + p gi   + d    l dpk  l  p  p e gel   i+  + +r   gy n +   ++     +  gdr f +gd+   dr g++++ dr  +     g nv    + +a+ +         +  e +v g+  + + g a  a v l eg a     d+l   l+  l ++  p  + +  ++ +ts  k  + +
  MMETSP1061-20121228|4929_1 261 KEEEEQQQPSSRWDETCLYIYTSGTTGLPKASKMNHMRIWSAGCVGKKL-----CRLRPSDRLYCPLPLHHTSGLAIGLGACLQMGCSTVIRPKFSVRHFSRDLLAHECTgaQYIGEMARYLTSASANKLDSKVK----LRFALGNGMPPEIWIPFRNRYNIDLViEFYGSTEGnvnMVNGTGMAPGaCGIVPPGFGWIYPiGIfkyDTDTGElLRDPKTGLcvPaaPNEPGELlgLIKQDDPSRrfdGYTNDTATKSKivdnvCKTGDRyFRSGDLLRQDRCGFLYFCDRVGETFRWKGENVSTSEVARAVLDcsekggaTGSFAEAVVYGVEvEGHPGRAGMATVVLTEGgADEPWQDSLWHSLQSELPRYAQPLFIRIKTQIEKTSTQKYKKTK 648
                 3445667899999*****************************8874333.....3344568******************************************98888772245555566777777777776643....3344566688899999999999998724579999622245688865541444566778887755542234444336788876533244677777633366555444223787766544431111123467735689************************************986222222234789*******735688********9998725555679*********************9999999999987765 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.053        22      34     121 ..      85     179 ..      67     187 .. 0.73
   2 !   14.8   0.0   4.8e-06     0.002     188     271 ..     267     350 ..     238     427 .. 0.84
   3 ?   -1.8   0.0      0.49     2e+02     415     456 ..     519     560 ..     507     565 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.053
   TIGR03208  34 rapdkpalvalrvesgavrrlsyreldalvdriavglar.......lgvgrgdvvslqlpnrwefvalylacarigavlnplmpifrerelsfml 121
                  ap  +a +   +      r++y e +   + +a+ l++       +  + +d+v++ +p + efv+  +   r g  +  +   +r + l++ l
  MMETSP1061-20121228|4929_1  85 SAPSSAASAPTSKSRKGRARMTYGEAEMASSAVAKWLTAptsssgaVVCQPNDIVAIFMPSGCEFVVSLFGLIRCGVRAALVNTGLRGNSLAHAL 179
                 5666666666666666677888888888888888877642222211445779***************9999999998887777777777776666 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 4.8e-06
   TIGR03208 188 rgdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgegdvilmaspmahqtgfmyglmlplvlrasavlqdiw 271
                 +++    d+ ++ iytsgttg pk        + s      +  +l+ +d +    p+ h +g + gl   l +++s+v++  +
  MMETSP1061-20121228|4929_1 267 QQPSSRWDETCLYIYTSGTTGLPKASKMNHMRIWSAGCVGKKLCRLRPSDRLYCPLPLHHTSGLAIGLGACLQMGCSTVIRPKF 350
                 455556799999************99888888999888888999************************9999999999987655 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.49
   TIGR03208 415 aegwfdtgdlafldaegyiriagrskdviirggenipvveie 456
                  + +f +gdl  +d  g++    r  +     gen+   e+ 
  MMETSP1061-20121228|4929_1 519 GDRYFRSGDLLRQDRCGFLYFCDRVGETFRWKGENVSTSEVA 560
                 5779***********************99999***9988875 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.048        20      47     100 ..     103     163 ..      88     176 .. 0.69
   2 !    8.0   0.0    0.0004      0.17     164     239 ..     256     331 ..     243     357 .. 0.79
   3 !    5.0   0.0    0.0031       1.3     404     451 ..     518     565 ..     480     572 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.048
   TIGR02275  47 rkfsyrelderadnlaasltk....lG...ikkgdtavvqlpniaefyivffallklGvaP 100
                  +++y e + +++++a  lt+     G    +  d + + +p   ef + +f l++ Gv+ 
  MMETSP1061-20121228|4929_1 103 ARMTYGEAEMASSAVAKWLTAptssSGavvCQPNDIVAIFMPSGCEFVVSLFGLIRCGVRA 163
                 5556666666665555554431111222115677888899999***************986 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0004
   TIGR02275 164 ksaleslaeevkleetkadevaffqlsGGstGtpkliPrthddyaysvrrsveiceltqqtrylcalPaahnypls 239
                 k++ ++ +ee +  +++ de   +  + G+tG+pk     h     +     ++c+l  + r  c lP  h   l+
  MMETSP1061-20121228|4929_1 256 KQQQQKEEEEQQQPSSRWDETCLYIYTSGTTGLPKASKMNHMRIWSAGCVGKKLCRLRPSDRLYCPLPLHHTSGLA 331
                 3333444455666788999999999***********99999988777788899******************87765 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.0031
   TIGR02275 404 daeGfyitGdlvkltkeGyivveGrakdqinrGGekiaaeeienlllk 451
                 + + ++++Gdl++ ++ G++    r+ +     Ge +++ e+   +l 
  MMETSP1061-20121228|4929_1 518 TGDRYFRSGDLLRQDRCGFLYFCDRVGETFRWKGENVSTSEVARAVLD 565
                 457799************************************988875 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   9.4e-07   0.00038      98     250 ..     126     292 ..      41     299 .. 0.68
   2 ?   -2.5   0.0      0.75   3.1e+02     483     543 ..     532     600 ..     415     650 .. 0.53

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 9.4e-07
   TIGR02316  98 salralgvrrgdrvliylpmiaeaalallacarigaihsvvfggfashsla....ariddatpkli.vsadagarggkvi...eykklldaaiaeaqhkpahvllvdrglak.lrrvpgrdvdyaalrrqhedadvevewlesneps.......yilytsgttgkpkgv 250
                 s   a+  +  d v i++p   e +++l+   r g   ++v  g+  +sla    + +d+ +      s+ + +r   v+   + k+ll+ +++e  + p+ + +v+ g    l   + +   +a l rqh++ + + e  e ++ps         +ytsgttg pk  
  MMETSP1061-20121228|4929_1 126 SSSGAVVCQPNDIVAIFMPSGCEFVVSLFGLIRCGVRAALVNTGLRGNSLAhaltTALDEGQEGSSsSSSSSSSRVRAVLvspDLKPLLE-SLQEGGQLPSSIDIVECGPGCeLDPWT-ETKRFAYLGRQHQKQQQQKEEEEQQQPSsrwdetcLYIYTSGTTGLPKAS 292
                 3444566678899****************9999999999999888777666111156676655443044445555555543334688886.578888899******988554244333.55589999999999988887777654442222221679*********975 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.75
   TIGR02316 483 dedgytfilgrtddvinvaghrlgtreieesv.......sshaavaevavvgvkde.lkgqvavafail 543
                 d  g+ +   r  +     g  + t e+  +v        +  + ae+ v gv+ e   g+  +a ++l
  MMETSP1061-20121228|4929_1 532 DRCGFLYFCDRVGETFRWKGENVSTSEVARAVldcsekgGATGSFAEAVVYGVEVEgHPGRAGMATVVL 600
                 344444444444444444444444444443332211111122345555555554331234444444444 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.1e-06    0.0017     122     165 ..     254     297 ..     239     302 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.1e-06
   TIGR01734 122 leeieeekaeavelekavkeddnyyiiytsGstGkPkGvqishd 165
                  ++ +++k+e  +++   + d++   iytsG+tG Pk  +++h 
  MMETSP1061-20121228|4929_1 254 HQKQQQQKEEEEQQQPSSRWDETCLYIYTSGTTGLPKASKMNHM 297
                 33333344444455556677999999***********9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.14s 00:00:00.70 Elapsed: 00:00:00.45
# Mc/sec: 2023.83
//
Query:       MMETSP1061-20121228|4935_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 729.41
//
Query:       MMETSP1061-20121228|4939_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       596  (0.145295); expected 82.0 (0.02)
Passed bias filter:                      252  (0.0614334); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 422.37
//
Query:       MMETSP1061-20121228|4944_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-35  117.7   0.0    1.2e-34  117.0   0.0    1.3  1  TIGR00357 TIGR00357: methionine-R-sulfoxide reductase


Domain annotation for each model (and alignments):
>> TIGR00357  TIGR00357: methionine-R-sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.0   0.0     3e-38   1.2e-34       2     131 ..     128     264 ..     127     267 .. 0.95

  Alignments for each domain:
  == domain 1    score: 117.0 bits;  conditional E-value: 3e-38
   TIGR00357   2 ksdeelkkkltklqyevtqnkgtekpftneykknkeeGiyvditsgeplfssedkfdsgcGWPsftkpiseeavkyekdeslgmirtevrskradahlGhvfddG......P.ektGkryCinsaalkfipleelek 131
                 ++d+e+k  lt+ qye+++n gte+ +++ ++ ++++G+y+++++++plf s+ kf+sg+GWPsf  +++  +++  +    ++   e+r+k++ +hlG vf+dG      P  ++Gkr+Ci+++al f p++  e+
  MMETSP1061-20121228|4944_1 128 QTDDEWKSALTPRQYEILRNGGTERQYSSVLEAEERDGTYNCAACQTPLFASAAKFHSGTGWPSFATALKGVEIEPLNVLQANLGGAELRCKTCGGHLGDVFRDGyvfvgtPaAESGKRFCIDGSALVFEPADGGER 264
                 789*****************************************************************************************************988888877899*************99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1446.60
//
Query:       MMETSP1061-20121228|4940_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-28   98.6   0.0    2.7e-28   97.2   0.0    1.7  1  TIGR01767 MTRK: 5-methylthioribose kinase
     0.0014   15.0   0.0       0.11    8.8   0.0    2.1  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
  ------ inclusion threshold ------
       0.01   13.2   0.0      0.032   11.5   0.0    1.8  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01767  MTRK: 5-methylthioribose kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   1.9e-31   2.7e-28       3     243 ..      49     300 ..      47     393 .. 0.80

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 1.9e-31
   TIGR01767   3 vGdGnlnlvfkvedregaraaivkqalPyvrvvG.eswPltldrarleasalvrq.....eeraPqsvpkiyhfdeelavivmedlsdhkilrkeliegeqyPq.....lardiGeflaktlf..rssdlalepkekkadvaqfinpelcditedlvfsdPyfdherndyeeeleavvaelrddadlkveaaklkksflasaetllhGdlhsGsilv..aetetkvidpefafyGPigfdiGtlianlllnflsrd 243
                 +  Gn+n+ f v     +r++ vkqa  ++ + G + +Plt +r + e++  +       ee +    p iy fd++  v+vme +  + +l + l+++e         +   +G+f++++    +ss l  +p+      + f n e+ d+  + vf+  y ++   +  + l  + + l + + l    ++   +   +a  l hGdlh Gs++v  ++++ kvidpef+ yGP g+d+G l++ + l ++ ++
  MMETSP1061-20121228|4940_1  49 IQGGNVNYAFCVDLPALSRKVFVKQATEFIAIFGpDGFPLTSERMQREMDVYTEWkemlgEEASKTYLPTIYGFDKKSMVVVMEFFDGYDLLDHVLVDEEGCSSldqkaVGEALGDFMGRVHAasYSSKLGEDPERIEYLKKHFENREMRDVQLEYVFTKCYKEATD-EQRDGLTLTDEFLAEVDLL---KKQYDGKVGDDALVLTHGDLHPGSVMVdvTNASAKVIDPEFTVYGPAGLDVGSLLSGYCLGAIHQE 300
                 567******************************9789*********99999887511221456777899***************888888888888887765540001156679******97522677787788888888899******************987754.3344454433333322222...2344445566788999**********6448999***********************9999988775 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   8.1e-05      0.11     192     263 ..      92     161 ..      88     171 .. 0.78
   2 !    4.1   0.0    0.0022       2.9     278     296 ..     250     268 ..     241     347 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 8.1e-05
   TIGR01982 192 tlkeEldlrlEaanaselkenfkndkklivPevyweltservltlewidgipvsdleklkeaG...ldlkalaen 263
                 ++++E+d  +E ++   l+   ++ +k + P++y     + v+++e+ dg  + d+  ++e+G   ld+ka+ e+
  MMETSP1061-20121228|4940_1  92 RMQREMDVYTEWKE--MLG---EEASKTYLPTIYGFDKKSMVVVMEFFDGYDLLDHVLVDEEGcssLDQKAVGEA 161
                 56666666666543..344...4567889*****9999999**********************666677777665 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0022
   TIGR01982 278 FHaDlHpGNilvakdgkii 296
                  H+DlHpG ++v+  ++ +
  MMETSP1061-20121228|4940_1 250 THGDLHPGSVMVDVTNASA 268
                 5***********9765433 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   2.4e-05     0.032      46     109 ..     101     172 ..      87     176 .. 0.73
   2 ?   -2.4   0.0      0.44     6e+02     111     132 ..     249     272 ..     246     275 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.4e-05
   TIGR03724  46 kEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel........ellkevGelvgklHka 109
                 +E + +   + +    P++y +d++++ +vme  +g +l d +  +e+         + +++G+ +g++H a
  MMETSP1061-20121228|4940_1 101 TEWKEMLGEEASKTYLPTIYGFDKKSMVVVMEFFDGYDLLDHVLVDEEgcssldqkAVGEALGDFMGRVHAA 172
                 2333344444456788**********************9988776666678888878889999999999987 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.44
   TIGR03724 111 ivhgDlttsNiiv..kddklyliD 132
                 ++hgDl++  ++v  ++ ++ +iD
  MMETSP1061-20121228|4940_1 249 LTHGDLHPGSVMVdvTNASAKVID 272
                 68******9999833356666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1448.88
//
Query:       MMETSP1061-20121228|4948_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 818.33
//
Query:       MMETSP1061-20121228|4933_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-118  393.9   0.0   1.5e-118  393.6   0.0    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    4.4e-76  254.1   0.0    5.1e-76  253.8   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
    2.3e-06   24.8   1.5     0.0041   14.2   0.1    2.0  2  TIGR01546 GAPDH-II_archae: glyceraldehyde-3-phosphate dehydrogenase, type II


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.6   0.0  1.1e-121  1.5e-118       2     330 .]      44     365 ..      43     365 .. 0.96

  Alignments for each domain:
  == domain 1    score: 393.6 bits;  conditional E-value: 1.1e-121
   TIGR01534   2 vginGfGRiGrlvlrallekkskdlevvaindl.tdleklayllkyDsvhGrfeeevtvsekkallvngkkvivlaserdpkdlpwkelgvdlvlectGafldkekalekhleagakkVllsaPskdeaaitlVygvNeeeldeseekiiSaASCTTnclapllkvleeefgiksglmtTvHayTadQkllDavhakdlrraRaaaeniiptstgaakavakvlpelagkltgeavRvPtpdvSlvdlvlnlekevtkeevnaalkeaseg.lkgvlgysedelVSsDiigspkssivdakatkvtelkeklvkvvaWYDNElgysnrlvd 330
                 +g+nGfGRiGrlv r+++e++    ++ ain   ++ +++ay  kyD++hG+ +++v+++ +  l+++gk ++++++ rdpk++ w +lg+d+v e+tG+fl+keka +  l+ gakkV+ saP+kd+  +t+V+gvNee++d  +e+ iS+ASCTTn lap++k++++ef i+++lmtTvHa+Ta+Q ++D+ ++kd+r +Raa+ niip+stgaakav+kv+p+l gkltg+a+RvPt dvS+vdl+++lek +t+ee++a++k+ seg +kg lgys+++lVS+D+ g+ +ssi+da+a ++  l+ ++vk+vaWYDNE+gys r+vd
  MMETSP1061-20121228|4933_1  44 MGVNGFGRIGRLVTRIMMEDDA--CDLKAINAGsATPDYMAYQYKYDTIHGKAKQTVEIDGD-FLVLDGK-KVQTSRCRDPKEVGWGALGADYVCESTGVFLTKEKA-QSILDGGAKKVIYSAPAKDD-SQTIVMGVNEEQYDG-SEDFISCASCTTNGLAPMVKAIHDEFIIEEALMTTVHAMTATQAVVDSSSRKDWRGGRAASGNIIPSSTGAAKAVTKVIPSLVGKLTGMAFRVPTIDVSVVDLTCKLEKATTYEEICAHIKARSEGsQKGFLGYSDEPLVSTDFEGDLRSSIFDADAGIM--LNPNFVKLVAWYDNEYGYSGRVVD 365
                 589****************955..888888888799**********************9998.7999995.7778889************************88886.9*****************96.66************6.9***************************************************************************************************************************************************************..5567******************97 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.8   0.0   3.8e-79   5.1e-76       3     325 .]      45     365 ..      43     365 .. 0.97

  Alignments for each domain:
  == domain 1    score: 253.8 bits;  conditional E-value: 3.8e-79
   TIGR01532   3 aingfgrigrnvlralyesgkraeievvalne.ladaaavayllkydtshgrfakevkvdrdqlyvnddairvlreselealdwrelgvdlvldctgvygsredgerfiaagakkvlfshpgaadldativygvnqedlsaeekivsnascttncivplikllddaigiesgtittihsamndqqvidayhn.dlrrtraasqsiipvdtklakgierllpkladrleaiavrvptvnvtaldlsvtvkkdvkanevnrvlreaaesalrgivdytelplvsvdfnhdphsaivdgtqtrvsgarlvkllvwcdnewgfanrmld 325
                  +ngfgrigr v r + e       ++ a+n   a ++ +ay  kydt hg+  + v+ d+d l +++  ++  r ++++ + w +lg d v + tgv+ ++e+++  ++ gakkv++s p+  d  +tiv gvn+e+  + e ++s ascttn   p++k ++d + ie + +tt+h+    q v+d+  + d r  raas  iip +t+ ak +++++p l ++l  +a rvpt++v+ +dl+ +++k +  +e+   ++  +e++ +g++ y++ plvs df+ d  s+i d     + ++++vkl++w+dne+g++ r++d
  MMETSP1061-20121228|4933_1  45 GVNGFGRIGRLVTRIMMEDD---ACDLKAINAgSATPDYMAYQYKYDTIHGKAKQTVEIDGDFLVLDGKKVQTSRCRDPKEVGWGALGADYVCESTGVFLTKEKAQSILDGGAKKVIYSAPAKDD-SQTIVMGVNEEQYDGSEDFISCASCTTNGLAPMVKAIHDEFIIEEALMTTVHAMTATQAVVDSSSRkDWRGGRAASGNIIPSSTGAAKAVTKVIPSLVGKLTGMAFRVPTIDVSVVDLTCKLEKATTYEEICAHIKARSEGSQKGFLGYSDEPLVSTDFEGDLRSSIFDADAGIMLNPNFVKLVAWYDNEYGYSGRVVD 365
                 58**************9975...56777888636899************************************************************************************7666.78************************************************************98766*********************************************************************************************************************************987 PP

>> TIGR01546  GAPDH-II_archae: glyceraldehyde-3-phosphate dehydrogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   5.3e-05     0.072       2      42 ..      45      87 ..      44     104 .. 0.86
   2 !   14.2   0.1     3e-06    0.0041     100     238 ..     155     301 ..     127     306 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.3e-05
   TIGR01546  2 ginGyGtiGkrvadavikqd..dmklvGvtktspdfeafiake 42
                g+nG+G iG+ v+  +++ d  d+k +     +pd+ a+  k 
  MMETSP1061-20121228|4933_1 45 GVNGFGRIGRLVTRIMMEDDacDLKAINAGSATPDYMAYQYKY 87
                8*************99998866889999999*******98765 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 3e-06
   TIGR01546 100 lkaifqGGekaevadvsfsalanyeeal.Gkdyvrvvscnttglvrtlnaindlskvek.....vravlvrraadpkevkkGpinaivpdpatvpshh..gkdvqtvirdl..nietmalvvpttlmhvhsimvelkdkvekedildvl 238
                 +k i+    k +   + +    n e+     d++   sc t gl   + ai+d   +e+     v+a+   +a  ++  +k        +   +ps    +k v  vi+ l  +++ ma+ vpt  + v  ++ +l++  + e+i   +
  MMETSP1061-20121228|4933_1 155 KKVIYSAPAKDDSQTIVMGV--NEEQYDgSEDFISCASCTTNGLAPMVKAIHDEFIIEEalmttVHAMTATQAVVDSSSRKDWRGGRAASGNIIPSSTgaAKAVTKVIPSLvgKLTGMAFRVPTIDVSVVDLTCKLEKATTYEEICAHI 301
                 55555555555555554432..3333320479********************988887611111555555555555555666666777788899998622689******9966799************************999997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1786.57
//
Query:       MMETSP1061-20121228|4942_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    9.7   6.4       0.24    9.2   4.4    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   4.4   5.9e-05      0.24      66     166 ..      39     134 ..      22     169 .. 0.42

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 5.9e-05
   TIGR03499  66 akkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselaleeedperakllkkll.eagvseelarelleklke 166
                 ++++++++++ ++++  + ++ +++++ ++  ++ ++++++++++++ +++ ++ +   + q+++      ++ +a ++++    +  se++++e ++k++e
  MMETSP1061-20121228|4942_1  39 SEQQQQQQQQPSYAS--SHQQWQAQTQGQSYGQSMQQQPQQQQHQQQQQQQQQQHQPFWTPQVQQ----AATQAAAGWMARAAtGNLSSENVIHEGMDKISE 134
                 111111111111111..111222222222333333333333333344444444444444444443....233344444333330333345555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       483  (0.117747); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1580.40
//
Query:       MMETSP1061-20121228|4951_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 1182.16
//
Query:       MMETSP1061-20121228|4949_1  [L=758]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 2942.58
//
Query:       MMETSP1061-20121228|4952_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|4945_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1773.93
//
Query:       MMETSP1061-20121228|4953_1  [L=965]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (965 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.44
# Mc/sec: 2894.76
//
Query:       MMETSP1061-20121228|4957_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 740.61
//
Query:       MMETSP1061-20121228|4960_1  [L=858]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (858 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.42
# Mc/sec: 2696.35
//
Query:       MMETSP1061-20121228|4958_1  [L=700]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.11s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 2148.66
//
Query:       MMETSP1061-20121228|4963_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1578.37
//
Query:       MMETSP1061-20121228|4964_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.87
# Mc/sec: 967.92
//
Query:       MMETSP1061-20121228|4965_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 1467.98
//
Query:       MMETSP1061-20121228|4969_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|4967_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-05   20.4   2.3    9.7e-05   19.8   0.7    1.9  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    6.8e-05   19.5  12.4    0.00024   17.7   8.4    1.9  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0021   15.7   1.1     0.0031   15.1   0.0    1.8  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
  ------ inclusion threshold ------
       0.13   10.0   6.9       0.37    8.6   4.8    1.7  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.7   9.5e-08   9.7e-05     130     222 ..     188     280 ..     172     290 .. 0.86
   2 ?   -2.3   0.0      0.54   5.5e+02      57      86 ..     413     442 ..     411     446 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 9.5e-08
   TIGR02521 130 kYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaa 222
                   e ++  y+Na+lc  ++++  +a++  tral+ ++++ ++l+ la+ +   ++   A ++++   +    +++ L+L   +a++   a  a
  MMETSP1061-20121228|4967_1 188 LDEIRSTLYSNAALCHIQLKNWGHAKTDATRALNFNKSNIKALYRLAKAYQMLKDWEPAGDAIDSGLEIDSTNKDLLKLKKLLADKIRSARLA 280
                 55567888********************************************************99999999999999999999887766655 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.54
   TIGR02521  57 AleldpkdadanlalAlyyqqlgelekAee 86 
                 A++ d k++ + + lA+y++    + +A++
  MMETSP1061-20121228|4967_1 413 AMHWDFKNEFVCSNLAVYFEVHNSNANANA 442
                 78888899999999*****99999888875 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   8.4   2.3e-07   0.00024      90     211 ..     122     244 ..      86     258 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.3e-07
   TIGR00990  90 ekkstapkaaaves....adelpeidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalllkedPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkya 211
                 e+ + a k  ++e      +e  e d +s     +++ ++   k k+k n      + +++ e y+ a l       ysn a c+  l ++ +   d+t+al++++  +kal r a+ay+ l  + 
  MMETSP1061-20121228|4967_1 122 EAVAWANKIEPIEHqqaqSKERTENDGNSNSSNDNDNDNDDNDKDKDKDNDK---PNREDTFEQYKEAELDEIRSTLYSNAALCHIQLKNWGHAKTDATRALNFNKSNIKALYRLAKAYQMLKDWE 244
                 5555555555555311113455566666665555555666666667777654...445788999999999999999********************************************998775 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.2      0.95   9.7e+02      64      80 ..     109     125 ..     105     139 .. 0.72
   2 !   15.1   0.0     3e-06    0.0031      59     127 ..     200     268 ..     188     276 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.95
   TIGR02552  64 alkeyeeAiaaYalaaa 80 
                   + y +Ai+ Y  a+a
  MMETSP1061-20121228|4967_1 109 NIQYYRDAINHYYEAVA 125
                 56778999988876654 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3e-06
   TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselke 127
                 a+c+ +lk++ +A    ++a+  ++++ +++y++a+ + +l++ e A +a++  +ei+  ++   +lk+
  MMETSP1061-20121228|4967_1 200 ALCHIQLKNWGHAKTDATRALNFNKSNIKALYRLAKAYQMLKDWEPAGDAIDSGLEIDSTNKDLLKLKK 268
                 89*******************************************************999887777765 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   4.8   0.00036      0.37      17     198 ..      89     267 ..      81     297 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00036
   TIGR03499  17 kvkeelGpdavIlstrkvrkg....glfskkkvevvaaideeesasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselaleeedperakllkklleagvseelarelleklkekedaeeareklreaLekklsvkkeedeilekg 198
                 k+ ++ G+da    +r+v+k+        ++++e va +++ e  + +++++++k+++e++ ++++s+ +++++   + ++k +++++ +++++ ++e+  ++el++++++l + ++  +  + ++ +   ++   + +++++ +++l++ +k+  +  + +e   +a+ + l+++ +++++l+ +
  MMETSP1061-20121228|4967_1  89 KASKQKGADAFLNGKRNVAKNiqyyRDAINHYYEAVAWANKIE--PIEHQQAQSKERTENDGNSNSSNDNDNDN---DDNDKDKDKDNDKPNREDTFEQYKEAELDEIRSTLYSNAALCH-IQLKNWGHAKTDATRALNFNKSNIKALYRLAKA-YQMLKDWEPAGDAIDSGLEIDSTNKDLLKLK 267
                 5666778999999999999988666334467899999888888..55555555555555555555555554433...3344455556666666666668889999999999988887543.556666666666667777777777777777777.4444555666666666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 2164.62
//
Query:       MMETSP1061-20121228|4970_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 824.13
//
Query:       MMETSP1061-20121228|4975_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   10.7   0.0      0.041   10.2   0.0    1.1  1  TIGR00284 TIGR00284: dihydropteroate synthase-related protein
       0.15    9.8  17.1     0.0038   15.1   7.5    1.5  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
       0.22    7.0   6.6       0.31    6.5   4.6    1.1  1  TIGR02102 pullulan_Gpos: pullulanase, extracellular
        1.1    6.1  16.1        1.5    5.7  11.2    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
        2.3    6.4  17.8       0.48    8.6   9.8    1.8  2  TIGR00621 ssb: single-stranded DNA-binding protein
        5.3    3.5   9.8        7.6    2.9   6.8    1.2  1  TIGR00860 LIC: cation transporter family protein
        5.6    3.1  20.8       0.32    7.2  10.9    1.4  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR00284  TIGR00284: dihydropteroate synthase-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   6.9e-05     0.041     116     235 ..     101     214 ..      86     228 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 6.9e-05
   TIGR00284 116 kvvkkrkkleekikkieered.afkigklkitdkpPplrvlaeidnavaldeleekairrlrkgadmvalGlvsneddadkvkekvkialdlldspvsvdteslkelieavkaGaslvlsv 235
                 ++ +  +k + + kk +++   a++ gk k  +  P   +l+ei +a+a     e ++ r r++    alGl+     a+kvk+ v +  ++ d pv v ++   ++   + aG s+ ++ 
  MMETSP1061-20121228|4975_1 101 QQQGASDKTKPQPKKQQQQPRfAVHFGKPKQFLVTP-TNILSEIAKAQA-----EIQASRQRQELLEEALGLP-DRMAAEKVKQIVLQHPQVVDDPVYVTALRNLQVDGMLMAGTSGAVNA 214
                 444456666666677777776678888888888887.9**********9.....555666777777779****.8999*************************999999999999998876 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   15.1   7.5   6.5e-06    0.0038      58     130 ..      65     156 ..      30     193 .. 0.51
   2 ?   -3.4   0.3       2.8   1.6e+03      80      86 ..     254     260 ..     231     290 .. 0.45

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.5e-06
   TIGR03499  58 saaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae...................eelrkelkalkellekqlse 130
                 +a++++  +++++++++++++++++++++++++++++++ a+ +++++ ++++                    ++ +e+++ ++ +++  ++
  MMETSP1061-20121228|4975_1  65 DASRNPSGKQQQQQQRQQQQQRQQQQQKQQKQKQQQQQQGASDKTKPQPKKQQqqprfavhfgkpkqflvtpTNILSEIAKAQAEIQASRQR 156
                 22222222222222223333333333333333333333333333333333333567788999999777777744444444444333333322 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.8
   TIGR03499  80 kaeekee 86 
                 ++++k+e
  MMETSP1061-20121228|4975_1 254 RQRSKKE 260
                 1111111 PP

>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.6   0.00053      0.31    1012    1084 ..      55     124 ..      32     156 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00053
   TIGR02102 1012 ktapkkeeeseadkekkedkdeskdkdkvaeaenkesktpagskkeneeveksskekkeekldkeaklpktae 1084
                  ++++++  e++a+++++ +++++++++++++ ++++ k+   +k++++++++++++k++ +++k+++ p+ a 
  MMETSP1061-20121228|4975_1   55 SVPSSSSAETDASRNPSGKQQQQQQRQQQQQRQQQQQKQ---QKQKQQQQQQGASDKTKPQPKKQQQQPRFAV 124 
                  445555555555555544444443333333333333222...3333335566777777777788888777664 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  11.2    0.0025       1.5     402     488 ..      64     158 ..      34     208 .. 0.43

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0025
   TIGR01628 402 qaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgr........rnlnnrnrnvlgnmnkkqqnaaskanqan 488
                   a++++  +q+++qq ++q+++ + +q++ +++++++++ +   ++ + +++q+q+r        +++    +n+l++ +k+q +  + +++++
  MMETSP1061-20121228|4975_1  64 TDASRNPSGKQQQQQQRQQQQQRQQQQQKQQKQKQQQQQQGASDKTKPQPKKQQQQPRfavhfgkpKQFLVTPTNILSEIAKAQAEIQASRQRQE 158
                 11222222222222222222222221111111111111111111111111222333343333333344444445555554444444333333333 PP

>> TIGR00621  ssb: single-stranded DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   9.8   0.00082      0.48     112     152 ..      72     111 ..      49     157 .. 0.56
   2 ?   -2.0   0.0       1.5   8.6e+02     131     135 ..     251     255 ..     215     287 .. 0.53

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00082
   TIGR00621 112 akaqggekelneesgesqqqapqesqqeaqatgkekassap 152
                 +k+q++++++++++ + qqq+ q++q+++q++++++++ +p
  MMETSP1061-20121228|4975_1  72 GKQQQQQQRQQQQQRQ-QQQQKQQKQKQQQQQQGASDKTKP 111
                 2222222222222222.222222223333333333333333 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.5
   TIGR00621 131 qapqe 135
                 ++ ++
  MMETSP1061-20121228|4975_1 251 KRKRQ 255
                 11111 PP

>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   6.8     0.013       7.6     346     412 ..      76     162 ..      57     193 .. 0.36

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.013
   TIGR00860 346 rlarllkkkeegeekrrpaleakelsslelrakkggedleskteeeallksvppsea....................sldlakilee 412
                 +++++++++++++++++++ ++++ ++   + k++++  +++++    ++  +p++                     s++++++lee
  MMETSP1061-20121228|4975_1  76 QQQQRQQQQQRQQQQQKQQKQKQQQQQQGASDKTKPQPKKQQQQPRFAVHFGKPKQFlvtptnilseiakaqaeiqaSRQRQELLEE 162
                 111111111111111112222222222222222222333333334444444444444222222222222211111123333333333 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2  10.9   0.00055      0.32     321     380 ..      65     129 ..      46     184 .. 0.56
   2 ?   -3.2   0.1      0.73   4.3e+02     413     422 ..     250     259 ..     225     320 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00055
   TIGR02442 321 keekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaes.....a 380
                 + +++++ k++++++ +++++ +++++k++++kq+++++g+ d++++++k++++++        +
  MMETSP1061-20121228|4975_1  65 DASRNPSGKQQQQQQRQQQQQRQQQQQKQQKQKQQQQQQGASDKTKPQPKKQQQQPRFAvhfgkP 129
                 22333333333333444444444455555555566777888888888888888887764222222 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 0.73
   TIGR02442 413 ktrsdkrgry 422
                 + r ++r++ 
  MMETSP1061-20121228|4975_1 250 AKRKRQRSKK 259
                 2222111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       659  (0.160653); expected 82.0 (0.02)
Passed bias filter:                      256  (0.0624086); expected 82.0 (0.02)
Passed Vit filter:                        64  (0.0156021); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.48
# Mc/sec: 907.43
//
Query:       MMETSP1061-20121228|4971_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1511.05
//
Query:       MMETSP1061-20121228|4974_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-19   65.7   0.0    3.5e-18   63.4   0.0    2.0  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    5.4e-14   49.6   0.0      1e-13   48.7   0.0    1.4  2  TIGR01179 galE: UDP-glucose 4-epimerase
    1.1e-13   48.8   0.0    1.5e-13   48.3   0.0    1.2  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    8.5e-11   39.4   0.0    1.2e-10   38.9   0.0    1.2  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    6.1e-10   36.7   0.0    1.3e-09   35.6   0.0    1.5  1  TIGR01746 Thioester-redct: thioester reductase domain
    2.9e-09   34.3   0.1    1.7e-06   25.2   0.0    2.0  2  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
      1e-08   32.6   0.1    2.4e-06   24.7   0.0    2.2  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    1.4e-07   28.8   0.0    4.4e-07   27.1   0.0    1.7  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
     0.0022   13.2   0.0     0.0028   12.8   0.0    1.1  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
  ------ inclusion threshold ------
      0.021   11.8   0.0      0.029   11.4   0.0    1.2  1  TIGR01472 gmd: GDP-mannose 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   8.5e-21   3.5e-18       2     322 ..      19     363 ..      18     366 .. 0.80

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 8.5e-21
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGee.vrvl...vrktsdrrnleeldv.........EiveGdlkdeaslkkalkGc...ealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvytssvatlgvkedgkeadettpsklekmiGhYkrskflAEqaveelaaeglpvvivnPstPiGprDikptPtgriivdalkrkmPayvdtgLnlvdvddvaegHl...lAlerGriG..erYiLGgen.ltlkqllek.laeitgl.kapklklpkalllpvallaealakltgkePlvtvdgvrmakkkmffssakAereLgyrq.rpaeealkdaveWfr 322
                 ++lvtG++GF G  +v++lle+G++ v ++   v +++ ++ +e ++             eGdl +++++++a + +   +++fH+ A    + k +e  ++ n++gt +++   ++ +v+++vy+ss +t  +  d +   e+     +k +  Y ++k   E+av++++ + l  v v+P    G+ D    P    +    k ++    +  + l ++d+ ++g l    Al +G       Y++ +++   + ++l++ + ++  +    k++lp +ll+++a++ ++l+ ltgk+      +v+m   + +f+ + A+r+L y     ++++  + +eWf+
  MMETSP1061-20121228|4974_1  19 NALVTGSSGFAGCRLVEMLLERGAKtVIAFdiaVPNAVTTERFEVIQKktggkiivlSQTEGDLCSDDAVDAAFTKIpklDVVFHIGALVGPFHK-KELYWEVNYRGTLRIIDCCKKYNVRKLVYSSSPSTRFTGGDVEGLSEDDMPIPDKFVALYAETKAAGEKAVHKACSDTLLTVSVSPHQLYGKYDSLFLPNLLEVSGSGKLRIFGKGENKISLCHIDNYSHGLLcgaDALYKGSPAlaKFYVITDDEpQYFWKILNQaVVAMDFVdLFSKFHLPVWLLFTAAYFCDFLTLLTGKQFKLKPFTVNMLIIHRYFNIKNAKRDLQYVPlVTFDKGWPETIEWFK 363
                 58*********************87233331112223333333333221111111114568*********9987754222899*****9988764.67789*****************************9999999988899988899**********************************************87666666666666667899************872225777887542267988776525688999762344443314689*****************************************************7636889**********8 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   2.5e-16     1e-13       2     158 ..      20     186 ..      19     197 .. 0.74
   2 ?   -3.4   0.0       1.7     7e+02     169     180 ..     329     340 ..     326     343 .. 0.79

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 2.5e-16
   TIGR01179   2 iLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekit........evklvegdladkekleavlee.ekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaav.YgesekvpisEespln...pinpYGrsklmvErilkd 158
                  LvtG++G+ G   v  lle+g+++v+  +++  ++ + ++ e i+         ++  egdl    +++a++++  k+d v H++al+      ++   Y+e n  +tl+++++++k++v+kl++sss ++ +   +   +sE+        +  Y ++k++ E+ ++ 
  MMETSP1061-20121228|4974_1  20 ALVTGSSGFAGCRLVEMLLERGAKTVIAFDIAVPNAVTTERFEVIQkktggkiiVLSQTEGDLCSDDAVDAAFTKiPKLDVVFHIGALVG---PFHKKELYWEVNYRGTLRIIDCCKKYNVRKLVYSSSPSTrFTGGDVEGLSEDDMPIpdkFVALYAETKAAGEKAVHK 186
                 59*********************97776555444333333322222222454335566799************973689*******9854...5678889***************************9976525555555777775444122567899999999887765 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.7
   TIGR01179 169 viLRYFnvaGAd 180
                 +i RYFn+  A+
  MMETSP1061-20121228|4974_1 329 IIHRYFNIKNAK 340
                 788****98886 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   3.7e-16   1.5e-13       2     124 ..      21     148 ..      20     222 .. 0.72

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 3.7e-16
   TIGR04180   2 lvtGadGfiGshlvealvekGae.vral..vlynsfnswGwldevekevkkeievv...lGdirdaesvkkavk...gvdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsev 124
                 lvtG+ Gf G  lve+l+e+Ga+ v a+  +  n++ +   ++ ++k++  +i v+    Gd+   ++v +a     ++dvvfh+ al++ P  ++  e y e n +Gtl +++++++++v+k+v +s+  +
  MMETSP1061-20121228|4974_1  21 LVTGSSGFAGCRLVEMLLERGAKtVIAFdiAVPNAV-TTERFEVIQKKTGGKIIVLsqtEGDLCSDDAVDAAFTkipKLDVVFHIGALVG-P--FHKKELYWEVNYRGTLRIIDCCKKYNVRKLVYSSSPST 148
                 9********************873667632344554.44567888888888877652227****9999998765122679*********9.5..57889**************************9876443 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   2.8e-13   1.2e-10       2     149 ..      21     184 ..      20     206 .. 0.72

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 2.8e-13
   TIGR02197   2 ivTGgaGfiGsnlvaalnekgetdilvvDklrk...............gekllnlkdeeiadyidkeellerlekeelkkveavfHegAisdTteldgellmenNyeyskellelcaekev.kliYASSAavY..Gdseeefreekele..rPlNvYgySKllfDelv 149
                 +vTG++Gf G  lv  l e+g++ ++++D                   g k++ l+++   +++  ++ ++   + ++ k+++vfH gA+     + +el +e Ny+ +++++++c++ +v kl+Y SS ++   G + e+ +e++     +   +Y+  K+  +++v
  MMETSP1061-20121228|4974_1  21 LVTGSSGFAGCRLVEMLLERGAKTVIAFDIAVPnavtterfeviqkktGGKIIVLSQT--EGDLCSDDAVDAAFT-KIPKLDVVFHIGALVGPF-HKKELYWEVNYRGTLRIIDCCKKYNVrKLVYSSSPSTRftGGDVEGLSEDDMPIpdKFVALYAETKAAGEKAV 184
                 7***************************976555777777777766554466655443..344444444444444.489***********9876.567899*****************9984699****998422434444444433333344556666666655555 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   3.2e-12   1.3e-09       3     185 ..      21     192 ..      19     205 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 3.2e-12
   TIGR01746   3 lLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLrealrsyrleeeklaaerievvaGdlseprlGLseaewerLa..eevdtivhngAlVnfvqpYeeLraaNVegtvevlrlaasgkakpliyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdrgl 185
                 l+TG +Gf G +l+e Ll+r    +vi++  a  ++   eR++   ++++ +  +l++       Gdl       ++a ++  +   ++d+++h gAlV  +++ e   ++N +gt  +++ + +++ ++l+y S+ s+  ++  ++   +++++   + + +  Ya++K ++E+ v +a +  l
  MMETSP1061-20121228|4974_1  21 LVTGSSGFAGCRLVEMLLERG-AKTVIAFDIAVPNAVTTERFEVIQKKTGGKIIVLSQ-----TEGDLCS-----DDAVDAAFTkiPKLDVVFHIGALVGPFHKKELYWEVNYRGTLRIIDCCKKYNVRKLVYSSSPSTRFTGGDVE--GLSEDDMPIPDKFVALYAETKAAGEKAVHKACSDTL 192
                 9*******************7.88******************9999998888888775.....8888554.....4555554444568***************99999****************************99987766554..5666666667778899**************987643 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.2e-09   1.7e-06       2     225 ..      20     243 ..      19     290 .. 0.74
   2 !    7.2   0.1    0.0012       0.5     284     314 ..     335     365 ..     330     369 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4.2e-09
   TIGR01181   2 lLvtGGaGfiGsnfvryileetpdaevvvlD.kLtyagnkenlkdledeer.....ysfvkgdiadrelverllkee.dvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevrllhi...stDevyGdlekddaeftettplaPs...sPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpekliPllitnalagkklpvyGdGqqvrDwlyveDhcr 225
                  LvtG +Gf G  +v+++le+ + ++v+ +D ++  a  +e ++ +++++      +s  +gd++  + v+  +++  + d+v ++ a        ++ e + e n  Gt +++++++k++   +l+     st    Gd+e      +e +   P+   + y+ +kaa+++ v+       l v++  +   yG y+    ++P l  ++  + kl ++G+G++     ++++ ++
  MMETSP1061-20121228|4974_1  20 ALVTGSSGFAGCRLVEMLLERGA-KTVIAFDiAVPNAVTTERFEVIQKKTGgkiivLSQTEGDLCSDDAVDAAFTKIpKLDVVFHIGALV---GPFHKKELYWEVNYRGTLRIIDCCKKYNV-RKLVYSsspSTRFTGGDVEGL----SEDDMPIPDkfvALYAETKAAGEKAVHKACSDTLLTVSV-SPHQLYGKYD--SLFLPNLL-EVSGSGKLRIFGKGENKISLCHIDNYSH 243
                 69***************999875.56999995577888888888888776411111334579***********99964789999999854...578999******************99643.335444111555666776544....55665556522268*********9998766655565555.5778999886..45788765.6666778999999999777777776655 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0012
   TIGR01181 284 daskikreLgwkpkvtfeeglrktvkWylen 314
                 + ++ kr+L++ p vtf++g  +t++W++ n
  MMETSP1061-20121228|4974_1 335 NIKNAKRDLQYVPLVTFDKGWPETIEWFKIN 365
                 5667789********************9865 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   5.8e-09   2.4e-06       6     122 ..      19     139 ..      15     146 .. 0.80
   2 !    5.5   0.1    0.0041       1.7     303     336 ..     335     368 ..     321     377 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 5.8e-09
   TIGR02622   6 kvlvtGhtGfkGsWlslwLkelGae.vaGy..sldpetkpnlfellklakklkd...ssvlgdirdaeklekaieev.kPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvk 122
                 + lvtG  Gf G  l+  L e Ga+ v+ +  +++ + +++ fe+++ ++  k    s++ gd+   +++++a++++ k ++vfh+ a  lv   +k+    +e+n  Gt+++++  ++ +  k
  MMETSP1061-20121228|4974_1  19 NALVTGSSGFAGCRLVEMLLERGAKtVIAFdiAVPNAVTTERFEVIQKKTGGKIivlSQTEGDLCSDDAVDAAFTKIpKLDVVFHIGA--LVGPFHKK-ELYWEVNYRGTLRIIDCCKKYNVRK 139
                 579*********************7455552266777788999999887654434457899***********99997578******87..78765555.557**************99988655 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0041
   TIGR02622 303 dsdkakkklgwkprlsleeaveatveWykeaylk 336
                 ++++ak+ l++ p  ++++    t+eW+k  +l 
  MMETSP1061-20121228|4974_1 335 NIKNAKRDLQYVPLVTFDKGWPETIEWFKINWLP 368
                 7889*************************87764 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.1e-09   4.4e-07       3     167 ..      21     218 ..      19     227 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.1e-09
   TIGR01214   3 litGakgqlgreLveqlsk.egsevvaltrs...........................qldledpealeellrei.kPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvgallvhiST..DYvFDGekkrpYreedetnP...lnvYgqsKlaGEvavraase.kalivRts..wlygasggrnFvktmlrla 167
                 l+tG++g  g +Lve l +   ++v+a++ +                           + dl   +a+   + +i k dvv + +A +   +   ++e  ++vN ++t ++   +++++++ + +S      F G + +  +e+d + P   + +Y+++K aGE av++a   + l v +s   lyg++    F+ ++l+  
  MMETSP1061-20121228|4974_1  21 LVTGSSGFAGCRLVEMLLErGAKTVIAFDIAvpnavtterfeviqkktggkiivlsqtEGDLCSDDAVDAAFTKIpKLDVVFHIGALV---GPFHKKELYWEVNYRGTLRIIDCCKKYNVRKLVYSSspSTRFTGGDVEGLSEDDMPIPdkfVALYAETKAAGEKAVHKACSdTLLTVSVSphQLYGKYD-SLFLPNLLEVS 218
                 7888888888888888888334455566666888888888888888899999999888899999999988887753669999999987...4567889999******************9876665412467*****************554568************99988456667777556999987.77888877764 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   6.8e-06    0.0028     969    1113 ..      14     148 ..       4     198 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.8e-06
   TIGR03443  969 aeeevtvfltGatGflGsfilrdlltrrkssslkvvahvrakseeaglerlrkagkaygiWdeewvskievvlGdlskekfGlseekwkklaeevdviihnGalvhWvyPysklrdanvigtinvlklaaegkaklfsfvsstsa 1113
                  a++ ++ ++tG++Gf G+ +++ ll+r       v+a+  a  ++ + er+    k  g      +  ++   Gdl +++    ++ ++k+  ++dv+ h Galv   +      + n  gt+ +++ +++ + +++ + ss s+
  MMETSP1061-20121228|4974_1   14 AKTGCNALVTGSSGFAGCRLVEMLLERG---AKTVIAFDIAVPNAVTTERFEVIQKKTGG----KIIVLSQTEGDLCSDDA--VDAAFTKIP-KLDVVFHIGALVGPFHKKELYWEVNYRGTLRIIDCCKKYNVRKLVYSSSPST 148 
                  567899*********************9...55566776677666666666655544442....244678889***99974..689999985.79**********9988888889**********************99999886 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.2e-05     0.029       3     127 ..      20     142 ..      18     178 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.2e-05
   TIGR01472   3 alitGitGqdGsylaelllekgye.vhGl.irrsssfnterlehlyeekhkeekalflhyGdltdsssllklieei.kpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfy 127
                 al+tG +G  G+ l e+lle+g + v  + i    ++ ter+e + +++  +   l    Gdl+   ++    ++i k + ++ ++a       f+  e   +v+  Gtlr+++  ++ +  k +  y
  MMETSP1061-20121228|4974_1  20 ALVTGSSGFAGCRLVEMLLERGAKtVIAFdIAVPNAVTTERFEVIQKKTGGKIIVLSQTEGDLCSDDAVDAAFTKIpKLDVVFHIGALV---GPFHKKELYWEVNYRGTLRIIDCCKKYNVRKLV--Y 142
                 9********************97524444255678899*******99999999999999***976666655555542788899999864...479999999**************9998876655..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.45
# Mc/sec: 1108.71
//
Query:       MMETSP1061-20121228|4972_1  [L=1243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.47
# Mc/sec: 3490.69
//
Query:       MMETSP1061-20121228|4978_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 509.96
//
Query:       MMETSP1061-20121228|4979_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.79    7.6  11.3       0.92    7.4   7.8    1.1  1  TIGR04135 FibroRuminTarg: Cys-rich radical SAM target, FibroRumin family
        4.5    5.5   7.3        5.8    5.2   5.1    1.2  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR04135  FibroRuminTarg: Cys-rich radical SAM target, FibroRumin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.8   0.00045      0.92      22      44 ..       4      26 ..       1      29 [. 0.67

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00045
   TIGR04135 22 amakCigvqCtsCtCaCsCrisk 44
                a+a+ ++    sC CaC C   +
  MMETSP1061-20121228|4979_1  4 AAAAAAAAPTSSCACACACASAS 26
                444444547889******97655 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.1    0.0028       5.8      19      41 ..       1      23 [.       1      31 [. 0.64

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0028
   TIGR02811 19 avgaaagavaaatgrvasasaaa 41
                a++aaa+a+aa t+  a a a a
  MMETSP1061-20121228|4979_1  1 AAAAAAAAAAAPTSSCACACACA 23
                56778888888888877554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 301.69
//
Query:       MMETSP1061-20121228|4976_1  [L=1130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.43
# Mc/sec: 3468.55
//
Query:       MMETSP1061-20121228|4983_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 424.66
//
Query:       MMETSP1061-20121228|4986_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.09s 00:00:00.27 Elapsed: 00:00:00.41
# Mc/sec: 978.65
//
Query:       MMETSP1061-20121228|4988_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.8   0.6      0.029   11.6   0.4    1.0  1  TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
        8.9    4.2  19.0          2    6.2   3.0    2.5  2  TIGR02077 thr_lead_pep: thr operon leader peptide


Domain annotation for each model (and alignments):
>> TIGR02311  HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.4   1.4e-05     0.029     197     247 ..       8      58 ..       2      60 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.4e-05
   TIGR02311 197 ierikaagkaaGiltadeklakkylklGalfvavGvdttllaraaealaak 247
                 i++  +a  a+Gi ++d+k ak  +++ ++ ++ G + t la a ++la++
  MMETSP1061-20121228|4988_1   8 IREGATAAAAPGIAANDKKTAKSGADATTTTTTTGLNRTNLATALNNLARN 58 
                 6666788899**************************************986 PP

>> TIGR02077  thr_lead_pep: thr operon leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   4.7    0.0075        15      10      16 ..       2       8 ..       1      14 [. 0.66
   2 ?    6.2   3.0   0.00099         2       9      15 ..      35      41 ..      30      46 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0075
   TIGR02077 10 ttiTtTi 16
                tt+TtTi
  MMETSP1061-20121228|4988_1  2 TTTTTTI 8 
                5666665 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.00099
   TIGR02077  9 tttiTtT 15
                ttt+TtT
  MMETSP1061-20121228|4988_1 35 TTTTTTT 41
                4444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.32
# Mc/sec: 292.85
//
Query:       MMETSP1061-20121228|4980_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-07   28.8   0.0    6.6e-07   27.1   0.0    1.8  1  TIGR00231 small_GTP: small GTP-binding protein domain
    2.2e-07   28.0   0.0    9.3e-06   22.7   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0001   19.9   0.0       0.11   10.0   0.0    2.4  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    0.00018   18.5   0.0     0.0011   16.0   0.1    2.0  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
  ------ inclusion threshold ------
      0.022   11.6   0.0      0.081    9.7   0.0    1.9  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     8e-10   6.6e-07       3     135 ..      71     249 ..      69     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 8e-10
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisite.skp.gvtrdyvteqieedGkt.........................................ykvnllDTaG..qedfdairrly.vrever.slevvdivilvldveegl.ekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvksl 135
                 + ++ ++G+ +vGK++ + +ll+++ ++ + ++p  +t+ +      ++G +                                           v+l+DT+G    ++++++r y +++v++ ++e +d+++ + d+ +    ++ k  i+++k ++ +i+ v+nK D+ d  +l   ++ l
  MMETSP1061-20121228|4980_1  71 KPQVMLIGQYSVGKTSFIRYLLGRD-FPGQrIGPePTTDRFTV---LINGPEervipgnalsvhpdlpfrglerfgvsflsrfegsqmpssvlRSVTLVDTPGilSGEKQRVNRGYdFNKVTGwFAERADLILVLFDAHKLDiSDELKGAIDSLKGNEDKIRCVLNKADQIDrqQLMRVYGAL 249
                 57899********************.66551566544444444...36664467999***********************************99*********99888889******8888875899**********9876513778999*****9***************987666666555 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.011       8.6     175     198 ..      71      94 ..      36      98 .. 0.84
   2 !   22.7   0.0   1.1e-08   9.3e-06      48     127 ..     160     243 ..     153     300 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.011
   TIGR03594 175 pikiaiiGrpNvGKStLvNallge 198
                 + ++ +iG+  vGK +++ +llg+
  MMETSP1061-20121228|4980_1  71 KPQVMLIGQYSVGKTSFIRYLLGR 94 
                 468999999999999999999986 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 1.1e-08
   TIGR03594  48 kefiliDTgGl.eeeede..lekeireqaelaieeadvilfvvdare.glteeDeeiaklLrkskkpvilvvNKvdnkkeeaea 127
                 ++++l+DT+G+ + e+++     + ++ +    e ad+il+++da++  +++e +  ++ L+ ++ ++  v+NK+d+ ++++ +
  MMETSP1061-20121228|4980_1 160 RSVTLVDTPGIlSGEKQRvnRGYDFNKVTGWFAERADLILVLFDAHKlDISDELKGAIDSLKGNEDKIRCVLNKADQIDRQQLM 243
                 6799*******94455541155689999****************99846777778899*******************9777653 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0009      0.74      10      41 ..      63      94 ..      55      99 .. 0.87
   2 !   10.0   0.0   0.00014      0.11      65     155 ..     161     250 ..     157     269 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0009
   TIGR03598 10 lkqlpedklpeiafaGrSNvGKSsliNaLtnr 41
                l+++  d++p++ ++G+  vGK s+i  L++r
  MMETSP1061-20121228|4980_1 63 LSDVEFDSKPQVMLIGQYSVGKTSFIRYLLGR 94
                567778999*****************999876 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00014
   TIGR03598  65 elrlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvllvDi.rhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvk 155
                 +++lvD PG    + ++ ++    + ++ ++ +r++L  +++l+D+ + +++++ +  ++ lk ++ ++  vl+KaD++++++l +   ++ 
  MMETSP1061-20121228|4980_1 161 SVTLVDTPGILSGEKQRVNRGYDFNKVTGWFAERADL--ILVLFDAhKLDISDELKGAIDSLKGNEDKIRCVLNKADQIDRQQLMRVYGALL 250
                 6789999998777776666666667889999999988..6678887245677777889************************9988766655 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.14   1.1e+02     211     233 ..      73      95 ..      67      96 .. 0.85
   2 !   16.0   0.1   1.3e-06    0.0011     259     419 ..     162     331 ..     160     354 .. 0.59

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.14
   TIGR00450 211 klaivGktNvGKSSLlNallkkd 233
                 ++ ++G+  vGK S +  ll +d
  MMETSP1061-20121228|4980_1  73 QVMLIGQYSVGKTSFIRYLLGRD 95 
                 6899**********998888665 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.3e-06
   TIGR00450 259 vkllDtAGiReaadk.vEk.lGiekslk.aikeadlvlyvlDaskpltkdd..eliitlkkkkkdlllvlNKiDLaeleilkselkltvsllsakqlkikelv.dllt.....ekinalyskekdeldlalisssealillekaiaeleqlleklekqlfldllvvdlreai 419
                 v l+Dt Gi   +++ v++    +k +   +++adl+l ++Da+k    d+    i+ lk ++ ++  vlNK+D ++ ++l +  +   +l s  ++ + + v  + +     e ++ + ++e  e + + + +  a+   + a++++++l +++ k+  l  +v +l++ +
  MMETSP1061-20121228|4980_1 162 VTLVDTPGILSGEKQrVNRgYDFNKVTGwFAERADLILVLFDAHKLDISDElkGAIDSLKGNEDKIRCVLNKADQIDRQQLMR--VYGALLWSLGKTMSSPEVtRVYVgsfwqEPLSSMDNSELFEMEEKDLMKDLAILPRQSAVRKINELVKRIRKVKTLAYIVAHLKQQM 331
                 567777777654443144422345544425799************8877765568999999**************97777766..333333333222222222022221000133444444444444444444444445567888888888888887666666666665443 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.39   3.2e+02     159     176 ..      73      90 ..      66      92 .. 0.86
   2 ?    9.7   0.0   9.8e-05     0.081     205     294 ..     160     245 ..     154     264 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.39
   TIGR02729 159 dvglvGlpnaGkStllsa 176
                 +v l+G  ++Gk ++++ 
  MMETSP1061-20121228|4980_1  73 QVMLIGQYSVGKTSFIRY 90 
                 689************985 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 9.8e-05
   TIGR02729 205 ksfvlaDiPgliegasegagLGleFLk....HiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleel 294
                 +s++l+D Pg+++g ++ ++ G +F k      er+ ++l l d+++    d+ ++l+   + Lk  +++        vlnk+d++++++l ++
  MMETSP1061-20121228|4980_1 160 RSVTLVDTPGILSGEKQRVNRGYDFNKvtgwFAERADLILVLFDAHKL---DISDELKGAIDSLKGNEDK-----IRCVLNKADQIDRQQLMRV 245
                 6899*********************995454579*************9...7777777777777776653.....3468888888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.09s 00:00:00.43 Elapsed: 00:00:00.63
# Mc/sec: 1183.71
//
Query:       MMETSP1061-20121228|4990_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.37
# Mc/sec: 324.62
//
Query:       MMETSP1061-20121228|4985_1  [L=999]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 3767.35
//
Query:       MMETSP1061-20121228|4989_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-28   96.3   3.7    5.9e-28   96.1   0.5    2.1  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    4.1e-19   65.8   9.2    1.6e-07   27.4   0.0    3.8  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    1.5e-18   64.4   7.7    3.2e-18   63.3   2.6    2.2  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    3.5e-11   40.9  12.5    5.4e-05   20.7   0.0    5.9  5  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    6.2e-11   39.1   9.3    1.4e-06   24.7   0.5    3.1  3  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    2.1e-08   31.1  10.2      0.026   11.0   0.0    5.0  5  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    3.9e-08   30.9   4.8      0.001   16.6   0.0    4.6  4  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    2.6e-07   28.2  11.3      0.016   12.5   0.5    4.3  3  TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO
    5.8e-07   28.0  12.4     0.0067   14.9   0.3    5.4  6  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    0.00017   19.6   4.0       0.01   13.8   0.2    2.9  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
     0.0022   15.9   0.3        1.5    7.0   0.0    4.4  4  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.19        69      39      70 ..     159     190 ..     150     228 .. 0.75
   2 !   96.1   0.5   1.6e-30   5.9e-28       1      92 [.     420     511 ..     420     522 .] 0.83

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.19
   TIGR02349  39 aeekfkeineAyevLsdeekraqYDqfghagl 70 
                  ++ f+e +e  ev+s+ +k  + +++++a+ 
  MMETSP1061-20121228|4989_1 159 LQQLFREAEECDEVISNAQKALMNEHYSEAAH 190
                 5678****************877777766543 PP

  == domain 2    score: 96.1 bits;  conditional E-value: 1.6e-30
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkg.ekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgd.i 92 
                 +YY++Lg++++As+++ikkAYr+la ++HPD+n++ ++eae+kf++i+eA+evLsd+e +a+YD+ g+  +e+++gggg++  gf + +fg+ +
  MMETSP1061-20121228|4989_1 420 NYYKVLGLPRTASAKDIKKAYRTLALEWHPDKNADnKEEAEKKFQDISEANEVLSDPELKAKYDR-GEPVFENQGGGGGGRHGGFGQ-HFGQqF 511
                 6********************************995678**************************.*****9998887776666654.233212 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   4.3e-10   1.6e-07     131     221 ..      46     136 ..      27     151 .. 0.64
   2 !   20.4   0.0   5.6e-08   2.1e-05     134     226 ..     178     272 ..     150     276 .. 0.79
   3 !   20.5   0.5   5.5e-08     2e-05     709     802 ..     291     393 ..     276     395 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 4.3e-10
   TIGR02917 131 rglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaie 221
                 rg  a+ l++++eA + +e+A + +p++      l ++    +k+++a   ++++L+ +p+n+d    k+ ll+s+g+ +  + +y+ a+e
  MMETSP1061-20121228|4989_1  46 RGEEAFSLRKFDEALRLYEKATQVEPENGTNFYKLYRVHNRMRKFASALSDIEKALELEPSNSDWRVQKARLLQSLGQCDRSVVEYQRALE 136
                 5555666666666666666666666666666666666666666666666666666666666666666666666666666666666666655 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 5.6e-08
   TIGR02917 134 AaLglgeleeAqksleqAla..iapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpna 226
                  aL +++  eA ++++ Al+  +  ++++  +++A   l+ +++ ++      +L+ +pk+ +A+ ++g   + +++ ++A+  +r+ ++l+p++
  MMETSP1061-20121228|4989_1 178 KALMNEHYSEAAHFFQRALKyvDGSQATDLLMQKATATLETGDYYGVISDTGLILKSYPKHLEAYKIRGMAYFWLNEHDLAVRHFREGLKLDPEH 272
                 46778888888888888887223456778888999999999999999999999999999999999999999999999999999999999998887 PP

  == domain 3    score: 20.5 bits;  conditional E-value: 5.5e-08
   TIGR02917 709 eGdlalrqkdykaAiqaykkalkrapssqtv.....ikLaeallasgntaeAaktleawL....kehpkdavlrtalAelylaekdedkAakhYqtvvkkapd 802
                  Gd a++ k++ +Ai+ y+ a++++p   +          +a++++++++eA +++ +      +++++ + ++ al++ +++ ++ d A + ++++++ apd
  MMETSP1061-20121228|4989_1 291 KGDDAMEAKNFVEAIEHYQGAIAIEPDHTNFkrptnLLIVRAYSRNKQHNEAIQLAREIVdendSDDANKIEALWALGDALTDAEKFDDALRTFRNALEAAPD 393
                 5888899999999999999999999987665222224567899999999999998887772222456788889999999999999999999999999999987 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.021       7.7      37      62 ..     155     181 ..     148     189 .. 0.80
   2 !   63.3   2.6   8.6e-21   3.2e-18       2      65 ..     419     484 ..     418     486 .. 0.96

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.021
   TIGR03835  37 a.adaakifaeineandvLsnPkkrar 62 
                 + a  +++f+e  e  +v+sn +k   
  MMETSP1061-20121228|4989_1 155 DiAKLQQLFREAEECDEVISNAQKALM 181
                 4467789***************99655 PP

  == domain 2    score: 63.3 bits;  conditional E-value: 8.6e-21
   TIGR03835   2 rDyyevLgidrDadeqeikkafrkLakkyhPDrnka..adaakifaeineandvLsnPkkraryDk 65 
                 ++yy vLg+ r a  ++ikka+r La  +hPD+n +   +a+k f++i ean+vLs+P+ +a+yD+
  MMETSP1061-20121228|4989_1 419 KNYYKVLGLPRTASAKDIKKAYRTLALEWHPDKNADnkEEAEKKFQDISEANEVLSDPELKAKYDR 484
                 68********************************997789*************************6 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.035        13     147     188 ..      52      93 ..      41      94 .. 0.80
   2 !   20.7   0.0   1.4e-07   5.4e-05      46     100 ..      89     143 ..      86     149 .. 0.89
   3 !    5.3   0.6    0.0071       2.6     147     214 ..     152     215 ..     141     224 .. 0.83
   4 !   18.1   0.2     9e-07   0.00034      25      99 ..     199     273 ..     193     359 .. 0.82
   5 ?   -0.1   2.5      0.32   1.2e+02     138     169 ..     364     395 ..     295     467 .. 0.61

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.035
   TIGR02521 147 kagdtekaekyltralkidpkrpesllelaelklkkgqyaeA 188
                 ++ ++++a    ++a++++p++   +++l +++   ++ a+A
  MMETSP1061-20121228|4989_1  52 SLRKFDEALRLYEKATQVEPENGTNFYKLYRVHNRMRKFASA 93 
                 566788888899999999999999999999888887777766 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 1.4e-07
   TIGR02521  46 dlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                 ++++A  ++ekAlel+p+++d     A ++q+lg+ ++   ++++Al+ +  n+ 
  MMETSP1061-20121228|4989_1  89 KFASALSDIEKALELEPSNSDWRVQKARLLQSLGQCDRSVVEYQRALESAGSNTG 143
                 5789*******************************************98766654 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0071
   TIGR02521 147 kagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtv.eqtaesLwLgiriak 214
                    d +k ++ +++a + d+  +++ ++l      + +y eA ++++r  + v + +a +L+++  +a 
  MMETSP1061-20121228|4989_1 152 TDTDIAKLQQLFREAEECDEVISNAQKALM-----NEHYSEAAHFFQRALKYVdGSQATDLLMQKATAT 215
                 556778899999999999999998888777.....89999********999998999999999998876 PP

  == domain 4    score: 18.1 bits;  conditional E-value: 9e-07
   TIGR02521  25 kdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                  d ++a +  +q+a++ le gd+     +    l++ pk  +a+++++++y  l e++ A ++fr++l+l+p+  
  MMETSP1061-20121228|4989_1 199 VDGSQATDLLMQKATATLETGDYYGVISDTGLILKSYPKHLEAYKIRGMAYFWLNEHDLAVRHFREGLKLDPEHK 273
                 6778899999**************************************************************976 PP

  == domain 5    score: -0.1 bits;  conditional E-value: 0.32
   TIGR02521 138 yeNaglcalkagdtekaekyltralkidpkrp 169
                 +  +g  + +a++++ a  +++ al++ p+  
  MMETSP1061-20121228|4989_1 364 LWALGDALTDAEKFDDALRTFRNALEAAPDGE 395
                 33333333444444444444444444444444 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.5   3.7e-09   1.4e-06      80     188 ..      34     142 ..      22     147 .. 0.91
   2 !    4.4   0.0    0.0051       1.9      86     225 ..     170     309 ..     147     315 .. 0.82
   3 !   14.2   0.4   5.2e-06    0.0019     319     387 ..     332     402 ..     329     416 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 3.7e-09
   TIGR03939  80 slvglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnk 188
                 ++++ +a +l++ ++ a +++++d+Al ly+k++q +P+n +    l  +   ++k ++Al+ ++++ e +ps+ +++  +a++l+++++  ++   +q+al+ +++n+
  MMETSP1061-20121228|4989_1  34 DINNWSAGKLRSRGEEAFSLRKFDEALRLYEKATQVEPENGTNFYKLYRVHNRMRKFASALSDIEKALELEPSNSDWRVQKARLLQSLGQCDRSVVEYQRALESAGSNT 142
                 667777777888888888899*********************************************************************************9998875 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0051
   TIGR03939  86 arelealAkAaRnekqwdkAlelyrkllqr..dPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltrlgapalaarlakqhpelftdeekrr 225
                 ++++ ++ kA+ ne  +++A+ +++++l+    ++  dll+  a + ++ g++    +      +++p++ e +++++ ++  ++++  a +   + l+l+P+ k   ke  ++ +++++    ++ a ++ +++++ e+++
  MMETSP1061-20121228|4989_1 170 DEVISNAQKALMNE-HYSEAAHFFQRALKYvdGSQATDLLMQKATATLETGDYYGVISDTGLILKSYPKHLEAYKIRGMAYFWLNEHDLAVRHFREGLKLDPEHK-GCKEGHRLVKKIDKKKKKGDDAMEAKNFVEAIEHYQ 309
                 56666777777776.599********99962257778999999************************************************************97.566666778888888888888888888888777765 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 5.2e-06
   TIGR03939 319 aylalrqpekAlslyrelaqaepakn..nleleekLfyAlleaeqyeeAqalldkllestPpqvwdfgrst 387
                 ay  ++q ++A +l re+ +++++++  ++e+   L  Al +ae+++ A +   ++le++P     ++++ 
  MMETSP1061-20121228|4989_1 332 AYSRNKQHNEAIQLAREIVDENDSDDanKIEALWALGDALTDAEKFDDALRTFRNALEAAPDGETETTQKA 402
                 788999**************99998886799****************************998877777765 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00011     0.042     126     159 ..      39      72 ..      20      80 .. 0.85
   2 !   11.0   0.0     7e-05     0.026     344     398 ..      87     141 ..      78     148 .. 0.90
   3 ?    2.0   0.1     0.035        13     349     431 ..     187     271 ..     147     275 .. 0.58
   4 !    8.1   0.1    0.0005      0.19     129     160 ..     287     318 ..     282     326 .. 0.90
   5 ?    1.3   0.1     0.059        22     474     495 ..     368     389 ..     328     406 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00011
   TIGR00990 126 yaaklkekGnkayrnkdfdkaielyskalllked 159
                  a kl+ +G++a+  ++fd+a+ ly+ka ++ ++
  MMETSP1061-20121228|4989_1  39 SAGKLRSRGEEAFSLRKFDEALRLYEKATQVEPE 72 
                 5789************************998775 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 7e-05
   TIGR00990 344 kgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsed 398
                 + k   al d++k++el+P+ ++  +++a +   lg+ d+   ++++al+    +
  MMETSP1061-20121228|4989_1  87 MRKFASALSDIEKALELEPSNSDWRVQKARLLQSLGQCDRSVVEYQRALESAGSN 141
                 567789*******************************************976554 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.035
   TIGR00990 349 ealadlsksieldP..rltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpd 431
                 ea   +++++      + t+  +++a+  le gd      d    lk  ++  + y  r+   f ++e++ a + +    +ldp+
  MMETSP1061-20121228|4989_1 187 EAAHFFQRALKYVDgsQATDLLMQKATATLETGDYYGVISDTGLILKSYPKHLEAYKIRGMAYFWLNEHDLAVRHFREGLKLDPE 271
                 3333334444332201223334455555556665555566666666666666666666666666666666666666666666665 PP

  == domain 4    score: 8.1 bits;  conditional E-value: 0.0005
   TIGR00990 129 klkekGnkayrnkdfdkaielyskalllkedP 160
                 k k+kG+ a + k+f +aie y+ a+ + +d 
  MMETSP1061-20121228|4989_1 287 KKKKKGDDAMEAKNFVEAIEHYQGAIAIEPDH 318
                 6699*************************996 PP

  == domain 5    score: 1.3 bits;  conditional E-value: 0.059
   TIGR00990 474 aellldknkfdealekfdlaie 495
                 ++ l+d +kfd+al+ f  a+e
  MMETSP1061-20121228|4989_1 368 GDALTDAEKFDDALRTFRNALE 389
                 6778899999999998888876 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.7e-06     0.001      65     130 ..      53     118 ..      47     124 .. 0.90
   2 !    7.2   0.1    0.0023      0.84      15     120 ..     166     273 ..     151     288 .. 0.79
   3 ?    3.2   0.1      0.04        15      63     120 ..     296     354 ..     292     364 .. 0.67
   4 ?    2.7   0.0     0.055        20      85     120 ..     360     395 ..     335     411 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.7e-06
   TIGR02552  65 lkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkerae 130
                 l +++eA+  Y+ a+++++++   +y+++ ++  + + ++Al++++ a+e+  +++ +   k r  
  MMETSP1061-20121228|4989_1  53 LRKFDEALRLYEKATQVEPENGTNFYKLYRVHNRMRKFASALSDIEKALELEPSNSDWRVQKARLL 118
                 67899**************************************************99987777665 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0023
   TIGR02552  15 eeqleaiYalAYnlyqqgkyeeAeklFq.lLaaldp.teakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                 +e+ +++ + A ++  +  y+eA+++Fq +L ++d  +  + ++  a ++ ++++y + i   +l+++ ++++ +++  ++  ++ l+e   A + ++  ++++ e +
  MMETSP1061-20121228|4989_1 166 AEECDEVISNAQKALMNEHYSEAAHFFQrALKYVDGsQATDLLMQKATATLETGDYYGVISDTGLILKSYPKHLEAYKIRGMAYFWLNEHDLAVRHFREGLKLDPEHK 273
                 457788888889999999999999999757999886145688899999999999999999999999999999999999999999999999999999998888877665 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.04
   TIGR02552  63 qalkeyeeAiaaYalaaaldlddprpvyhaaecll.algekeeAlkaLklaieiaeeke 120
                 +++k++ eAi+ Y+ a a+++d+ ++   +    + a  ++++ ++a++la ei +e++
  MMETSP1061-20121228|4989_1 296 MEAKNFVEAIEHYQGAIAIEPDHTNFKRPTNLLIVrAYSRNKQHNEAIQLAREIVDEND 354
                 7789999*************999775544433322144555566666666666666555 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.055
   TIGR02552  85 dprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                 + ++++++++ l+  ++  +Al++++ a+e a + e
  MMETSP1061-20121228|4989_1 360 KIEALWALGDALTDAEKFDDALRTFRNALEAAPDGE 395
                 445666677777777777777777777777766554 PP

>> TIGR03302  OM_YfiO: outer membrane assembly lipoprotein YfiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00033      0.12       3      64 ..      12      71 ..      10     110 .. 0.84
   2 !   12.5   0.5   4.3e-05     0.016      28     117 ..     164     249 ..     146     264 .. 0.84
   3 !    8.5   1.2   0.00073      0.27      34      97 ..     288     350 ..     271     422 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00033
   TIGR03302  3 llllllllllllagCsskkkkeaekteeesaeelYeeaeeelekgnykeAikkfeelesryp 64
                ++l++l+ ++  ag ss++ +  ++ +++sa +l +++ee+++ ++++eA + +e+  +  p
  MMETSP1061-20121228|4989_1 12 CALATLVYFASTAGASSSSAR--DDINNWSAGKLRSRGEEAFSLRKFDEALRLYEKATQVEP 71
                556677777777777777777..99******************************9887666 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 4.3e-05
   TIGR03302  28 teeesaeelYeeaeeelekgnykeAikkfeelesrypfseyaeqaqLdlayayYksgeyeeAlaaadrFiklyPnhedvdyalYliglsn 117
                  e+e+ +e+ ++a+++l +++y+eA+  f++  + y  +  a++  ++ a a  ++g+y   ++     +k yP+h +   a+ ++g+++
  MMETSP1061-20121228|4989_1 164 REAEECDEVISNAQKALMNEHYSEAAHFFQRALK-YVDGSQATDLLMQKATATLETGDYYGVISDTGLILKSYPKHLE---AYKIRGMAY 249
                 5667778899********************9876.55666788999****************************9976...455566665 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.00073
   TIGR03302  34 eelYeeaeeelekgnykeAikkfeelesrypf.seyaeqaqLdlayayYksgeyeeAlaaadrFi 97 
                 ++  +++ +++e++n+ eAi+ ++   +  p  +++ +  +L +  ay ++++++eA++ a++ +
  MMETSP1061-20121228|4989_1 288 KK--KKGDDAMEAKNFVEAIEHYQGAIAIEPDhTNFKRPTNLLIVRAYSRNKQHNEAIQLAREIV 350
                 33..79******************8888777616799999******************9988755 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.17        62      45      84 ..      46      82 ..      45     117 .. 0.71
   2 !    9.6   0.2   0.00075      0.28      47     112 ..     177     241 ..     173     245 .. 0.90
   3 !   10.7   0.0   0.00036      0.14       6     101 ..     209     303 ..     204     313 .. 0.78
   4 !    8.5   0.0    0.0018      0.65      46     110 ..     292     357 ..     288     363 .. 0.83
   5 !   14.9   0.3   1.8e-05    0.0067      14      77 ..     335     399 ..     329     440 .. 0.77
   6 ?   -3.1   0.1       6.5   2.4e+03      90     103 ..     454     467 ..     451     470 .. 0.58

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.17
   TIGR02795 45 lGealyakkkykdAakaflevvkkypksekapdallklge 84
                +Ge  ++ +k+++A + ++++++  p++     + +kl +
  MMETSP1061-20121228|4989_1 46 RGEEAFSLRKFDEALRLYEKATQVEPENG---TNFYKLYR 82
                599999***************99877654...34444444 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00075
   TIGR02795  47 ealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaa 112
                 +  +++++y++Aa+ f+ ++k y ++++a d l++ +++  e+g+     +    + k YPk  +a
  MMETSP1061-20121228|4989_1 177 QKALMNEHYSEAAHFFQRALK-YVDGSQATDLLMQKATATLETGDYYGVISDTGLILKSYPKHLEA 241
                 55677899************9.***********************999999999999999998666 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00036
   TIGR02795   6 ykaallvlkegdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypkse..kapdallklgeslqelgqkekAkktlqe 101
                  ++a+  l+ gdY   +      lk+YPk+    +A+  +G a++  ++ + A ++f+e +k +p+++  k    l+k     ++ g+ +   k + e
  MMETSP1061-20121228|4989_1 209 MQKATATLETGDYYGVISDTGLILKSYPKHL---EAYKIRGMAYFWLNEHDLAVRHFREGLKLDPEHKgcKEGHRLVKKIDKKKKKGDDAMEAKNFVE 303
                 578999**********************985...677799**********************999987446677777665555555555444444444 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.0018
   TIGR02795  46 GealyakkkykdAakaflevvkkypkse..kapdallklgeslqelgqkekAkktlqevikrYPkss 110
                 G   +++k++ +A+++++ +++  p+++  k+p +ll + +++++++q+++A +  +e++++  + +
  MMETSP1061-20121228|4989_1 292 GDDAMEAKNFVEAIEHYQGAIAIEPDHTnfKRPTNLL-IVRAYSRNKQHNEAIQLAREIVDENDSDD 357
                 556788999**********999999886569****99.569999**********9999998765555 PP

  == domain 5    score: 14.9 bits;  conditional E-value: 1.8e-05
   TIGR02795  14 kegdYakAeqaFkaFlkkY.PkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapd 77 
                 +++++++A+q  ++ ++++ ++++ + +A + lG al+ ++k++dA ++f++++++ p++e    
  MMETSP1061-20121228|4989_1 335 RNKQHNEAIQLAREIVDENdSDDANKIEALWALGDALTDAEKFDDALRTFRNALEAAPDGETETT 399
                 68999**********998835667789*****************************999876544 PP

  == domain 6    score: -3.1 bits;  conditional E-value: 6.5
   TIGR02795  90 gqkekAkktlqevi 103
                 ++ke+A k +q++ 
  MMETSP1061-20121228|4989_1 454 DNKEEAEKKFQDIS 467
                 45666666666554 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.3    0.0082       3.1      95     142 ..     153     200 ..     140     211 .. 0.70
   2 !   13.8   0.2   2.7e-05      0.01       6      56 ..     434     482 ..     430     483 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0082
   TIGR00714  95 akdeaaleklkkkvkkeiqsllaalvealkeqdyaaAakyt.skLkylr 142
                  +d a+l++l ++ + e ++ +++ ++al +++y++Aa++  + Lky++
  MMETSP1061-20121228|4989_1 153 DTDIAKLQQLFREAE-ECDEVISNAQKALMNEHYSEAAHFFqRALKYVD 200
                 456677777776665.466677777788888888888776514588875 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.7e-05
   TIGR00714   6 kaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56 
                 k ++k yr l  ++HPD  k+a ++  a ++  ++ +A + L dp ++a+y
  MMETSP1061-20121228|4989_1 434 KDIKKAYRTLALEWHPD--KNADNKEEAEKKFQDISEANEVLSDPELKAKY 482
                 668999***********..99999999******************999987 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.14        54      13      25 ..      53      65 ..      51      67 .. 0.86
   2 !    7.0   0.0    0.0042       1.5       6      28 ..     329     351 ..     328     353 .. 0.88
   3 ?    0.5   0.0      0.47   1.7e+02       9      25 ..     370     386 ..     369     390 .. 0.82
   4 ?   -3.5   0.0       8.6   3.2e+03      17      31 ..     457     471 ..     455     474 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.14
   TIGR00756 13 agrveeAlelfde 25
                 ++++eAl+l+++
  MMETSP1061-20121228|4989_1 53 LRKFDEALRLYEK 65
                689********86 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0042
   TIGR00756   6 lisglckagrveeAlelfdeMke 28 
                 ++++++++++ +eA++l +e+++
  MMETSP1061-20121228|4989_1 329 IVRAYSRNKQHNEAIQLAREIVD 351
                 689*************9988876 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.47
   TIGR00756   9 glckagrveeAlelfde 25 
                 +l  a ++++Al+ f+ 
  MMETSP1061-20121228|4989_1 370 ALTDAEKFDDALRTFRN 386
                 6778899******9985 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 8.6
   TIGR00756  17 eeAlelfdeMkergi 31 
                 eeA++ f+++ e++ 
  MMETSP1061-20121228|4989_1 457 EEAEKKFQDISEANE 471
                 788888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.46
# Mc/sec: 1497.79
//
Query:       MMETSP1061-20121228|4984_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-83  278.1   0.8    2.3e-83  277.8   0.5    1.1  1  TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase
    6.6e-59  197.6   0.6    8.4e-59  197.2   0.4    1.1  1  TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit
    7.9e-28   93.6   3.4      2e-27   92.3   2.4    1.5  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA


Domain annotation for each model (and alignments):
>> TIGR00128  fabD: malonyl CoA-acyl carrier protein transacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  277.8   0.5   1.7e-86   2.3e-83       2     288 ..      51     345 ..      50     347 .. 0.96

  Alignments for each domain:
  == domain 1    score: 277.8 bits;  conditional E-value: 1.7e-86
   TIGR00128   2 kialvFPGqGsqavGmgkdlleeypiakelfdqAdeiLgydlkklvqegdaeelnktaytqPalyvvsvilyellkekggl....kPdfvaGHsLGEysAlvaagaldFedalklvkkRgelmqeavpegegamaavlgldeeqlakvleeake...evvslanfnspeqvvisGtkkevekaeallk.eagakralpLevsgafHselmkpaaeklkelleaiqfnkatvpvisnvdaeaetekdklkekLveqltspvrwtesveklaekGvtefaEvGpGkvLtGLikrikk 288
                 k++++FPGqG+q vGm +++++e+p+ak lfd+A+eiLgydl ++++eg++e+l+ t  +qPa++v+s++++e+lk++ g     +   ++G sLGEysAl+ aga++F+d++k++k Rge mq a+ + +++m+ v+gld+e++++++e a+e   e+v++anf + +   +sG+ ++ + +++++k e +a++ + L+v+gafH+ +m+pa ++l+++l++++++k+ +pvisnvda+++ + +++k+ L++q+tspv w+++++ + +k  ++ +E+GpGkv  G+ kr +k
  MMETSP1061-20121228|4984_1  51 KVSFMFPGQGAQSVGMCSEVVAEVPAAKALFDEASEILGYDLLEVCTEGPKEKLDSTVVSQPAIFVASMAAVEKLKQDAGAeavdEATCAMGLSLGEYSALCFAGAISFADGVKITKARGEAMQAAADAVDTGMVSVIGLDSEKVKELCEVASEksgEKVQIANFLCKGNYAVSGATAACDTLAEIAKpEFKARMTVRLAVAGAFHTDFMAPAVSSLEDVLKEVEIKKPRIPVISNVDAQPHSDPETIKKLLATQVTSPVLWENTMDLILSKDFEKAYELGPGKVTAGILKRFSK 345
                 789**************************************************************************99551111456889**********************************************************9988877899*****************************9*******************************************************************************************************986 PP

>> TIGR03131  malonate_mdcH: malonate decarboxylase, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.2   0.4   6.2e-62   8.4e-59       3     279 ..      54     347 ..      52     353 .. 0.93

  Alignments for each domain:
  == domain 1    score: 197.2 bits;  conditional E-value: 6.2e-62
   TIGR03131   3 llfpGQGsqragmlae.lpdepkaaavleeasevlgadvlel...ddaealastrsaQllilaagvaaaraLkaele.....kpsavAGySvGelaAavvagalefedaLkLvalRaelMeqavpe.eygllavlGleeeevealvakag......vyiAiinaedqvViaGsraalsavaeaar.aaGasrakrlaVsvpSHtkllakaaeelaealaeiplaapklpvlsaiearkvrdaaallddLaqqiakpvdWhavveaiaergarlvielgPGsaLtklanelfpel 279
                 ++fpGQG+q+ gm  e +++ p+a+a+++ease+lg d+le+     +e+l st++ Q++i++a++aa+++Lk+        ++ ++ G+S+Ge++A + aga++f+d++k+ ++R+e+M++a++  ++g+++v+Gl+ e+v++l++ a       v iA++  + ++ ++G+ aa + +ae a+ +  a+ + rlaV+ + Ht+++a a+  l+++l+e+++++p++pv+s+++a++  d++ + + La+q+  pv W +++++i     +   elgPG++ + ++++  +++
  MMETSP1061-20121228|4984_1  54 FMFPGQGAQSVGMCSEvVAEVPAAKALFDEASEILGYDLLEVcteGPKEKLDSTVVSQPAIFVASMAAVEKLKQDAGaeavdEATCAMGLSLGEYSALCFAGAISFADGVKITKARGEAMQAAADAvDTGMVSVIGLDSEKVKELCEVASeksgekVQIANFLCKGNYAVSGATAACDTLAEIAKpEFKARMTVRLAVAGAFHTDFMAPAVSSLEDVLKEVEIKKPRIPVISNVDAQPHSDPETIKKLLATQVTSPVLWENTMDLILSKDFEKAYELGPGKVTAGILKRFSKAA 347
                 89************9966788999******************76555789**********************9875411111478999************************************999*******************9999999*****************************99845689999*********************************************************************************************98776655 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   2.4   1.4e-30     2e-27     578     875 ..      49     339 ..      36     354 .] 0.84

  Alignments for each domain:
  == domain 1    score: 92.3 bits;  conditional E-value: 1.4e-30
   TIGR02813 578 sakvaalfaGqGsqylnmGrelacnfpelrqaladadkvfsqagktalssvlypipvfndesrkaqeealtntayaqsaiGvlsvgqyklltq.aGfka....dlvaGhsfGelsalcaaGvisdddylklaferGqamaassaeadaGvmyavilkvkksaevik.ncikdiegvsianynsptqlviaGasaaiqlaakalkekGfka...iplpvsgafhtplvahaqkpfsaaidkakfnkpkvplysngtgklhkndakaikkalkdhilesvhfseeleaiyaaGarvfvefGpknilqkl 875
                 s+kv  +f GqG+q + m  e+ ++ p  +    +a ++++ + +    +v          +++  +e l  t  +q+ai v s++  + l q aG +a        G s+Ge salc aG is  d +k++ +rG+am a+++  d+G+   + l+ +k  e  + +  k+ e v+ian+ ++ +  ++Ga+aa +    ++ +  fka   + l v+gafht ++a a   + + + + + +kp++p+ sn  ++ h+ d + ikk l   +   v +++ ++ i ++      e+Gp  +   +
  MMETSP1061-20121228|4984_1  49 SSKVSFMFPGQGAQSVGMCSEVVAEVPAAKALFDEASEILGYDLL----EV----------CTEGPKEKLDSTVVSQPAIFVASMAAVEKLKQdAGAEAvdeaTCAMGLSLGEYSALCFAGAISFADGVKITKARGEAMQAAADAVDTGMVSVIGLDSEKVKELCEvASEKSGEKVQIANFLCKGNYAVSGATAACDTL-AEIAKPEFKArmtVRLAVAGAFHTDFMAPAVSSLEDVLKEVEIKKPRIPVISNVDAQPHS-DPETIKKLLATQVTSPVLWENTMDLILSKDFEKAYELGPGKVTAGI 339
                 789*********************999887766666666554432....22..........3455678899***************9988865477754221156779*****************************************99999999999888665135577899*****************9988765.567778888655599********************************************7.7899********************9999988888899998776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1460.13
//
Query:       MMETSP1061-20121228|4994_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-34  115.3   0.0    3.2e-33  113.0   0.0    2.1  2  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.05   2.1e+02     356     385 ..     118     148 ..      67     187 .. 0.35
   2 !  113.0   0.0   7.8e-37   3.2e-33      54     454 ..     275     734 ..     231     741 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.05
   TIGR00860 356 egeekrrpaleake..lsslelrakkggedle 385
                 ++++ +r ++++++   +++ ++ +++ + ++
  MMETSP1061-20121228|4994_1 118 PNDHRSRRSTHSHSapRNNVYVSKQRR-RRMK 148
                 222222222222221222222221111.1111 PP

  == domain 2    score: 113.0 bits;  conditional E-value: 7.8e-37
   TIGR00860  54 ggkpvtVsinlilasiskvdeknmdytvniwlrqeWtDerLqyneeeskgvtkvrled.........esiWvPDillanekdarfheitkknvlvrisknGevlysirltltlaCpmd.lknfPlDvQnCslkleSygYttddik.lelkeqea.....vqvdeslfielpefellgvlktrse.te....etstgeYselklslvlrRrilYYllqlyiPsillvilslvsFwlnkdasgarvsLgittlLtlttfssgvreslPavsyvkaIdvylvvclvfvflalleyalVnyvvhkksakkkrklllerlarllkkkeegeekrrpaleakelsslelrakkgg....edle.....................................skteeeallksvppsea................sldlakileevriakr..lrkkdeseevakeklkrakviDklsrlvFplvflif 454
                  ++ + V+i l + ++ +vd     + +  wl   W D rL++n+e++ g++ + +            +iW PDi+l n++d   +  t +n++v+++++G+  +  +  +++ C    l+nfP+D+  C+l+++S+ Y +  ++   lk  ++     + + e    +   f++  +l + ++  +        ++++ l ++l + R    Y+  ++   ++l + ++  Fw+++  +g+r++L it +L+     ++v+  lP    v   + +++    f  + + e  +V+y ++   +    + ++  ++r ++k +++ + + +a +  e s+ +   +++        +                                     +                                + + +++ + ++++++  +r  +e+ e    +   ++ iD  +r+ Fp+++++f
  MMETSP1061-20121228|4994_1 275 TREGLPVEIGLNVHKVFSVDVAASTVDLLAWLSLAWYDPRLAWNPEDFGGLNCSWFFVgdgtgggeaSEIWTPDIYLWNSADPIAS--TLDNAYVKVTNDGRAFWVRPGRIVSTCKYKgLENFPFDRLACQLEFGSWVYSGMYLHpTTLKSGDEdhgltIGGSETSGSSFATFQINTELSKSESiVYppypVSPDEDWPVLIYDLYFDRASAPYVRGVLFINVMLNLAAFFCFWIPPH-VGERMGLAITCVLAAVAGELVVAGLLPVCREVTWYNKFMMLSTSFALIVVFESTVVIYFFYFTGDDLVPTWVRYLQRRCQCKARPARTSHAQAKSDMERSNTAEDHHATDadwnP--SsddgskdnhhatpdadwnpsssdgsqdsnivhffsnrE---------------PnendetsrrtmfagskHASDQRAARALSLHEAgdFRTVEEA-ENNLYWQAISEYIDDGARILFPIFYVVF 734
                 56677888899999*********************************999887776555688999999**************9865..55689999999****************8744********************99666524555553212222556666666778888888777776633222213457899****************************************.******************************************9999999999999999888766666655555555666666666554443333333322222222222122221..122222233334444445555554444444444333331...............144455555555544432222223333333332003333333.3344577778889999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 2615.47
//
Query:       MMETSP1061-20121228|4996_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       354  (0.0862994); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|4999_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.16s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 239.98
//
Query:       MMETSP1061-20121228|4995_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 796.49
//
Query:       MMETSP1061-20121228|4997_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1610.27
//
Query:       MMETSP1061-20121228|5000_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1687.86
//
Query:       MMETSP1061-20121228|5002_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   10.1   4.7       0.15    9.8   3.2    1.3  1  TIGR02234 trp_oprn_chp: trp region conserved hypothetical membrane protein


Domain annotation for each model (and alignments):
>> TIGR02234  trp_oprn_chp: trp region conserved hypothetical membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   3.2   3.7e-05      0.15      42     125 ..       8      93 ..       4     145 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.7e-05
   TIGR02234  42 alkGaswsavllaLAlvllAAlvAalavRsagrrvvagL..lAvaavgagllavsLltvsdataedakaArasltssvasqraseg 125
                 a+   ++s+vllaLAl+  A      a + a + v+a L  +Av ++ a  ++ s+l+ + ++   + +   s t  va+  + +g
  MMETSP1061-20121228|5002_1   8 AMATMKYSTVLLALALAFGAEAFSPQANKAANKPVLADLkkAAVNTMAAIAIGSSVLSTPVVADAMDMQPVFSTTNIVAATETRQG 93 
                 6666789*******************************977799999999999999999766654444555566666777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1099.91
//
Query:       MMETSP1061-20121228|5005_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 514.30
//
Query:       MMETSP1061-20121228|5004_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1348.17
//
Query:       MMETSP1061-20121228|5007_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 2120.62
//
Query:       MMETSP1061-20121228|5010_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   13.2   0.0       0.01   13.0   0.0    1.0  1  TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family


Domain annotation for each model (and alignments):
>> TIGR03620  F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.5e-06      0.01     220     249 ..      26      54 ..      15      56 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.5e-06
   TIGR03620 220 lagsGSDrLvdalvawGdadtvaarvkehl 249
                 ++g+ SD+L  a++a Gd++ v ++v++h 
  MMETSP1061-20121228|5010_1  26 VSGQ-SDALAPAIFALGDEKIVNRKVQSHV 54 
                 6666.***********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 318.97
//
Query:       MMETSP1061-20121228|5009_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.59
# Mc/sec: 176.73
//
Query:       MMETSP1061-20121228|5012_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.47
# Mc/sec: 280.83
//
Query:       MMETSP1061-20121228|5013_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.35
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|5014_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 467.04
//
Query:       MMETSP1061-20121228|5011_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 2882.47
//
Query:       MMETSP1061-20121228|5018_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-18   62.9   0.0    7.5e-18   62.7   0.0    1.2  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    9.3e-11   39.2   0.0    1.5e-10   38.5   0.0    1.4  1  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   3.7e-21   7.5e-18     194     285 ..      61     149 ..      13     151 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 3.7e-21
   TIGR00005 194 s.gkeavTvfkvlerdeka.....slvelkllTGRtHQiRVHl.qylghplagDplYgnksvkgksleaeaklkrqaLhaselgfthpatgelleleap 285
                 +  k+++T +++l+++++a     + +el + TGRtHQ+RVH+ + lg p++gD++Yg  +           +  ++Lha++l+++hp++g ++ +ea+
  MMETSP1061-20121228|5018_1  61 EaPKPSKTSWSILSYEHDAsgrpvTRIELLPHTGRTHQLRVHTsKVLGAPIVGDEIYGTGDG----------KTPLCLHARQLCLEHPISGAAMVFEAD 149
                 3479**********976652222279****************84689***********9777..........4679*******************9986 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   7.5e-14   1.5e-10     134     183 ..      86     135 ..      51     146 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 7.5e-14
   TIGR01621 134 rlfilkphtGkthqlrva.lkslGsailGdslygkaeesdrtylhafklef 183
                 r+  l phtG+thqlrv   k lG++i+Gd +yg+ +      lha +l +
  MMETSP1061-20121228|5018_1  86 RIE-LLPHTGRTHQLRVHtSKVLGAPIVGDEIYGTGDGKTPLCLHARQLCL 135
                 444.45***********62699***************9999*****99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 872.28
//
Query:       MMETSP1061-20121228|5008_1  [L=1115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00024   16.7  25.7    0.00024   16.7  17.8    4.3  5  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
     0.0005   15.7 124.2    0.00047   15.8  21.6    4.1  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.0  16.5         2   4.1e+03     681     787 ..     104     210 ..      84     320 .. 0.56
   2 !    3.3   9.7    0.0014       2.8     698     923 ..     222     443 ..     214     467 .. 0.66
   3 !   12.4  25.0   2.4e-06    0.0048     277     500 ..     385     614 ..     369     630 .. 0.66
   4 !   16.7  17.8   1.2e-07   0.00024     666     896 ..     627     854 ..     617     862 .. 0.80
   5 !    7.2  13.7   8.8e-05      0.18     735     911 ..     865    1039 ..     854    1087 .. 0.67

  Alignments for each domain:
  == domain 1    score: -13.0 bits;  conditional E-value: 2
   TIGR02169 681 rerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedlea 787
                  +r ++++ +l++ ++++r+ ek ++ +s++ s+++ k ++++k+++  +++ ++++       +k s+ + ++++k+++ k+ ++    +e + ++ +  +++  +
  MMETSP1061-20121228|5008_1 104 TRRNKSMDGDLKTDKKKKRKEEKSSKGKSKEKSKEKSKPKKKSKKVKPTADDDDAVSYTGSTTSSKASKKKGDKKNKQSKEKKSQKVETIRESASSNERTVVDNETD 210
                 23444555555555555555555555555555555555555555555555555555544444444444444444444444444333333333333333333333333 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0014
   TIGR02169 698 lrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnk...lelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkel 923
                  + i++++d+l  + s ++kk  ++  e  + ++ee+ + e +  l+++ s+l+ ++ +kke   +   +i + +++ ++  +al  +  ++++e++ + ++ ++       ++++  ++ ++++ +   ++ +   +++ + +   + + + ++++  ++ +   ++ l+e+++e+e l++++ +  +e ++Lk + e  e++ +e+ ++   l++++e        +
  MMETSP1061-20121228|5008_1 222 TADIRNEMDSLFPSPSPEQKKKLTAAVEGGTGNNEESSFDELIPTLNDSGSSLHSARSQKKEAAGKSVFHIMSNKAASEQAAAALHRVATRQQMENVMHHHSASSFGSGMDLSWRSEQRSDQRSVGRyarRHSNASAADDLSLKSGGSHNSFRSRRSRDKNSLRIRQKILDEFKKEAEDLQKELSDALAEVAELKTNLEAKEKHSKEAAEEHSVLKTKLEY-------R 443
                 56788899999999888888888888888899999999999999999999999999999999999999999999999888888998888888888888888777776666666655555544444430003334444444444444555555555555555555555555555555555555555555555555555555555555555555555555443.......3 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 2.4e-06
   TIGR02169 277 elnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeei.......eelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleel..aeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqa 500
                  + +ki ++ + e+  ++++l +  ae+++l+ ++++ke++ ++a+e+   ++ +++   ee+       +++e++    + + eklk+ ++ + ++ e l+++le+ ++e  ++ +el+++  ++e  + +  +lk   +  l ++ +++++l  +++el +i+  i   +++   +  ++e ++  q  ++l ++ ++ ++  + ++eel+k e+el e e+ l+e +a+ 
  MMETSP1061-20121228|5008_1 385 RIRQKILDEFKKEAEDLQKELSDALAEVAELKTNLEAKEKHSKEAAEEHSVLKTKLEYRLEEKafliasvRDMENDFVIRNEHVEKLKQLVDTHLDTVEFLEKKLEQTEEEIVTMDNELNAVADAIEGKNGKSGNLK---NIHLSKKAKRSARLGSIRQELRDIKGTISMQKAKSRRVlsEQEPSTTSQSGKELDNNFKSRQEMFESREEELNKRERELLEFEQRLKEENAKM 614
                 578899999999*********************************99998888777766666500111114455555555666777777777777777777777777777777777777777777777777777777...333467788888999999999999988765554444431133344444445555555555555555555555666666555555555555543 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 1.2e-07
   TIGR02169 666 gelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeele.kleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereele 896
                 ++ v+ +++++l +lr + e+L  +l+ +++  ++  +++d+ ++k  + +  ++++ +el+ + +  +k++e ++ le+++++++e+ e +k  l + ++ ++ ++e ++ l+e++e+l +++++ +     +  + +  + v + + +++++e+e++kl+ + ++  + +++  +  ++ +e  k++e++ie+l +k+ + ++ +e++++ ++ Lee  ++L+++ ++++
  MMETSP1061-20121228|5008_1 627 ASRVALNDNAELMKLRLENENLRMKLDGVMKTTAEG-SAIDADQDK--ALTTAMSTKARELSDALAVLDKKNEVIKSLEDEVKKIHENFETNKGDLSHAQSLLSVKNEVIKSLEEEVENLAEKYRNANNAGRPSDGDlSNAALVDEKNDVIKSLEEEIDKLKKRGQIVADLSNTT-AIGDKENEVTKALEDQIEDLTKKVSDARALVEKKNNLIKGLEEDVEKLQEKNSNAS 854
                 456778889999999999999*99999999887765.444444443..3455566666667777778888999***********************************************999887665544433330334667888999************8888887776655.55555666778899999999999********************9999999988765 PP

  == domain 5    score: 7.2 bits;  conditional E-value: 8.8e-05
   TIGR02169  735 klkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnkle.lekelleeeiqelqeeieeleeqkkeiekeie.elkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeelea 911 
                  k+ke ++ lee+++ l+++ ++ + e +  +  i el+ +l + k++ ++l    s +++ ++++e+++l+++vs ++ r+++ e++l + +  +k+ +   ++++ e+     ++++++  +i  + +++  +le  +e le +v   ++  +dL++e+e+l+a  + +++  +   +
  MMETSP1061-20121228|5008_1  865 KKKEIIKSLEEEVEMLKNKGTATNGEDDGKDVLIRELQSQLVNTKKQADQLS---SGSHVTKLKHEIKALKDNVSGLKLRVKK-EQSLAETNlKKKDAAIRLVEKKMEKLTFELDRREKRSSTIGiSPQISQSKLEMLVEDLEEEVIHWKSANADLQNEIEQLKASGNLQQDSFHSNTE 1039
                  6788888888888888888888888888888888888888888888888775...5677777788888888888877777765.44444444133333334444443333333333333333433144555667777777888888888888888888888888877766665554444 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -11.9  16.1         2   4.1e+03     756     841 ..     116     203 ..      86     328 .. 0.30
   2 !    9.4  19.5   1.9e-05      0.04     252     459 ..     353     557 ..     298     564 .. 0.69
   3 !   10.7  22.5     8e-06     0.016     697     922 ..     537     764 ..     526     786 .. 0.71
   4 !   15.8  21.6   2.3e-07   0.00047     696     966 ..     768    1042 ..     762    1063 .. 0.59

  Alignments for each domain:
  == domain 1    score: -11.9 bits;  conditional E-value: 2
   TIGR02168 756 keleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt..elkeeaaekeerleslekeiaaleke 841
                  + ++ ++e+++ + + +e+++e+++ ++++++++ +++++ +   + +++ s+++++    + k++ ++k++++e +++ +++ e++
  MMETSP1061-20121228|5008_1 116 TDKKKKRKEEKSSKGKSKEKSKEKSKPKKKSKKVKPTADDDDAVSYTGSTTSSKASKKKGdkKNKQSKEKKSQKVETIRESASSNERT 203
                 1111111111111111111111111111111111111111111111111111111111110011111111111111111111111111 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 1.9e-05
   TIGR02168 252 eeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeele 459
                  ++ +++++   ++  +++ +r+++s+++++l+  qk l+e+k+e ++l++e+  + ++ ++l+++le+ e++ +e+ ++   l+++l+   ee++ l +++ ++e+++  +++ +e+l++ +++  + +e l++++ ++ee++ + ++el+ + + +e  + +  +lk+   ++++k    +a+l  +++el + + ++  ++++ +
  MMETSP1061-20121228|5008_1 353 HSNASAADDLSLKSGGSHNSFRSRRSRDKNSLRIRQKILDEFKKEAEDLQKELSDALAEVAELKTNLEAKEKHSKEAAEEHSVLKTKLEYRLEEKAFLIASVRDMENDFVIRNEHVEKLKQLVDTHLDTVEFLEKKLEQTEEEIVTMDNELNAVADAIEGKNGKSGNLKNIHLSKKAK---RSARLGSIRQELRDIKGTISMQKAKSR 557
                 3444444444556667778888888888888888888888888888888888888888888888888888888888887777788877777777777777777788877777888888888888888888888888888888888888888888888887777777776655444322...335555555555555555444444444 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 8e-06
   TIGR02168 697 elekelkelekeleel..eeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleel 922
                 ++++el +++ + +    ++++   ++e  +++++ +el++++++ ++  e+ ee+l+++e+el e+e++ +e+++++ e +++    +e+ +++l++++e +k +l++++ +++ l   ++++ e  a  + + + l++ ++ +++el ++ + +++++e i+sle+e++++ e+ e+ + +l +++   + ++e +++l+ee e+l+e+ r+++++ +  + +l+++
  MMETSP1061-20121228|5008_1 537 SIRQELRDIKGTISMQkaKSRRVLSEQEPSTTSQSGKELDNNFKSRQEMFESREEELNKRERELLEFEQRLKEENAKMVEGQSKDgVVQEASRVALNDNAELMKLRLENENLRMK-LDGVMKTTAEGSAIDADQDKALTTAMSTKARELSDALAVLDKKNEVIKSLEDEVKKIHENFETNKGDLSHAQSLLSVKNEVIKSLEEEVENLAEKYRNANNAGRPSDGDLSNA 764
                 4455555555444333003333334445555677778888888888999999999999999999999998888777766666555477777777777777777777766655543.4555555555555556667899999999999999999999999*****************9999***********99999************999999999877777666554 PP

  == domain 4    score: 15.8 bits;  conditional E-value: 2.3e-07
   TIGR02168  696 aelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleelee..qieeleeeiesleaeieeleeelee....leeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekve 966 
                  +e+++ +k+le+e ++l+ ++ ++ ++l +++   +++++  ++le ++e l+++++++++ +e+ ++ ++ lee++e+++e+ ++a++ +++l+  + + ke +k+l+e+++ l+++ t+++ e + k   +++l++++ +++k++++l++     +l++ei++l+++++ l+ + ++    +e++l++++++ + +e+++++l  el+  +++  ++    +  + +le l e l++   +++++++++++ +e+l+++++l+ + + +++e+++
  MMETSP1061-20121228|5008_1  768 DEKNDVIKSLEEEIDKLK-KRGQIVADLSNTTAIGDKENEVTKALEDQIEDLTKKVSDARALVEKKNNLIKGLEEDVEKLQEKNSNASDLSNALD-LLGKKKEIIKSLEEEVEMLKNKGTATNGEDDGKDVLIRELQSQLVNTKKQADQLSSgsHVTKLKHEIKALKDNVSGLKLRVKKeqslAETNLKKKDAAIRLVEKKMEKLTFELDRREKRSSTIGISPQISQSKLEMLVEDLEEEVIHWKSANADLQNEIEQLKASGNLQQDSFHSNTESLD 1042
                  455555555555555555.3333444444433333444444455566666666666666666666666666666666666555444444444433.4445555555566666666666665555555555555666666666666665555411334455555555555555555444400004445555555555567777777777777777777777777888999999999999999999999999999999999999999999888877544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       540  (0.131643); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.09u 0.15s 00:00:01.24 Elapsed: 00:00:00.81
# Mc/sec: 1816.89
//
Query:       MMETSP1061-20121228|5016_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.23
# Mc/sec: 2737.34
//
Query:       MMETSP1061-20121228|5017_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-06   25.3   0.0    5.3e-06   24.1   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.3e-09   5.3e-06       5      95 ..     163     280 ..     161     290 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.3e-09
   TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskp.........gvtrdyvteqieedGkt..................ykvnllDTaGqedfdairrly.vreverslevvdivilvldvee 95 
                  +++ G +  GK++L+++ll++++    s +          ++ + ++   ++++++                  +++ +lDT+G+   +++ r++ ++ev+r++ vvd + +v  + +
  MMETSP1061-20121228|5017_1 163 TVLMCGPSLGGKTSLFYRLLQQQRGGNDSSStssissstsSTSTSSNMM-GTVRSIKsntgfldsfpnddtgsasTTLRILDTPGHWGPQKLLRAVpLQEVQRLVVVVDSTQPVAPAAD 280
                 5788888889**********99853222222233333333222222222.3444444888*************************999999999999*************999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       299  (0.0728913); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1537.28
//
Query:       MMETSP1061-20121228|5022_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2100.83
//
Query:       MMETSP1061-20121228|5025_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   10.6   0.0      0.076    9.9   0.0    1.2  1  TIGR01607 PST-A: Plasmodium subtelomeric family


Domain annotation for each model (and alignments):
>> TIGR01607  PST-A: Plasmodium subtelomeric family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   1.9e-05     0.076     136     188 ..     140     190 ..     131     203 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 1.9e-05
   TIGR01607 136 ekkkkrlplyivGlsmGgnialr.vlellnkskelldklnikGcislsGmisik 188
                  +k+   p+yi+G s Gg +a   +l ll ++ke     ++   + l G++ i+
  MMETSP1061-20121228|5025_1 140 REKESGRPIYIAGESFGGILATDiTLTLLAEQKE---SEDVEVAVNLQGLVLIN 190
                 3344478***********8887625788877777...33455556666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2401.19
//
Query:       MMETSP1061-20121228|5027_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|5021_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2858.25
//
Query:       MMETSP1061-20121228|5030_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2165.60
//
Query:       MMETSP1061-20121228|5032_1  [L=679]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-50  170.1   0.0    2.1e-50  169.6   0.0    1.1  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    2.7e-15   54.4   0.0    4.2e-15   53.8   0.0    1.2  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A
  ------ inclusion threshold ------
      0.027   11.9   0.0      0.043   11.2   0.0    1.2  1  TIGR00736 nifR3_rel_arch: putative TIM-barrel protein


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   0.0   1.5e-53   2.1e-50       5     282 ..     317     601 ..     314     608 .. 0.90

  Alignments for each domain:
  == domain 1    score: 169.6 bits;  conditional E-value: 1.5e-53
   TIGR00737   5 eLksrvvlaPlagvtdlafRrlvkeyeaglvvsEmvssealveksektkklleiaedekpisvQlagsdpdvmaeaAk.iaeelgadiiDlNmGCPvkkitkkgaGsallkepeliekivkavveavevPVTvKiRiGwdeehinveeaariaed..aG.aqavalHgRTraqlyeGeanwdiiarvkqavk.....iPVignGDitspedAk.amLeetg.adgvligRgalGkPwlfkeieqylttgklkkaptlaeklaailrhlqlladyyg.eekglreaRKhva 282
                 + +++v +aPl+ v +l+fRr++k+++a +++ Em  +++l+e + +   ll+++ +e + ++Qla ++pd  +   + i++ +  d +D+N+GCP + +  kgaG++l+ ++++++  +k + +  +  +TvK+R+Gw+ ++ +++e++  ++    G  +av++HgR r q+y+ +anwd+i++v  ++k     +PVignGDi+s+++ k ++L + +     ++gRgal kPwl +ei++     k    ++ +e+l++++  ++   ++ g +++g++++R+ + 
  MMETSP1061-20121228|5032_1 317 DFSNKVYVAPLTTVGNLPFRRIMKQFGADITCGEMAVVTNLLEGKPSEWALLKRHPSEDTFGIQLAAAHPDQFTRVSElIEKYTDVDFVDMNLGCPLDLLCNKGAGAGLMMRENKLKGALKGMSKNLSCSITVKMRTGWNIHKPFAHELVPKIQSweIGnLAAVMVHGRSRLQRYKLDANWDYISQVAGSLKtqipkVPVIGNGDIFSFSEYKeKVLAHDNlSTTAMLGRGALIKPWLPTEIKE-----KRDWDISASERLDILKDFVKHGLEHWGsDQQGINNTRRFLL 601
                 5689**************************************************************************9999999*************************************************************99998887522442589***********************99888888889***********988762577776515678***************986.....34446888999999999998888888878899999998665 PP

>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0     3e-18   4.2e-15       2     265 ..     321     583 ..     320     605 .. 0.76

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 3e-18
   TIGR00742   2 klsvaPmlditdrhfryllrllskkvllytemvtakaiihgdkk..kllkfseeekPvalqlggsdpedlakcaklaee.fgydeinlnvGcPsdrvqngnfGaclmanadlvadivkamkeaveiPvtvktriGideldsye.elvdfveivsdkGikefivharkawlkGlsPkenreiPplryervyqlkkdfpnllieinGGiksleeik....khlsfvdsvmvGreayenPyllaavdrelfdetdeiltrkeiveqmlpyieeel 265
                 k+ vaP+  + +  fr +++++  +++   em   + ++ g      llk ++ e+   +ql++  p++ +++ +l e+  + d +++n+GcP d + n   Ga lm + +++   +k m ++ +  +tvk r G + ++ +  elv  ++  +   +   +vh r   l+ +    n +      +    lk + p++ +  nG i s  e k    +h +   + m+Gr a   P l ++++    ++ d ++++ e +  + +++++ l
  MMETSP1061-20121228|5032_1 321 KVYVAPLTTVGNLPFRRIMKQFGADITC-GEMAVVTNLLEGKPSewALLKRHPSEDTFGIQLAAAHPDQFTRVSELIEKyTDVDFVDMNLGCPLDLLCNKGAGAGLMMRENKLKGALKGMSKNLSCSITVKMRTGWNIHKPFAhELVPKIQSWEIGNLAAVMVHGRSR-LQRYKLDANWDYI---SQVAGSLKTQIPKVPVIGNGDIFSFSEYKekvlAHDNLSTTAMLGRGALIKPWLPTEIK----EKRDWDISASERLDILKDFVKHGL 583
                 7889*******************99875.899999999*9965412589******************************7789****************************************************998876641455555544444478889999965.6666655554422...2345689***************88655551111555566689********999977664....444444444444444444444443 PP

>> TIGR00736  nifR3_rel_arch: putative TIM-barrel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.2e-05     0.043      83     143 ..     390     453 ..     368     469 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.2e-05
   TIGR00736  83 ldvelsvaes..adiieinahCrqPeiteiGiGqellknkelLkefvakvk.karkpvfvkirg 143
                   v +++ ++  +d +++n  C    + + G+G  l++ ++ Lk  +  ++ ++   + vk+r 
  MMETSP1061-20121228|5032_1 390 TRVSELIEKYtdVDFVDMNLGCPLDLLCNKGAGAGLMMRENKLKGALKGMSkNLSCSITVKMRT 453
                 555666666511566**********************************99677889*****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.39
# Mc/sec: 2297.96
//
Query:       MMETSP1061-20121228|5034_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1078.67
//
Query:       MMETSP1061-20121228|5035_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1823.85
//
Query:       MMETSP1061-20121228|5031_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 2303.42
//
Query:       MMETSP1061-20121228|5036_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 631.95
//
Query:       MMETSP1061-20121228|5033_1  [L=787]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.9e-135  448.6   3.9    5.5e-85  284.0   0.0    2.0  2  TIGR00955 3a01204: pigment precursor permease
      2e-86  288.6   3.5    3.6e-59  198.3   0.0    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    3.6e-34  116.4   0.0    5.6e-34  115.8   0.0    1.2  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.5e-33  114.3   0.1    2.9e-33  113.4   0.0    1.4  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.9e-33  113.1   0.0    5.3e-33  112.3   0.0    1.3  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    7.1e-33  111.8   0.0    1.2e-32  111.1   0.0    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    8.8e-32  108.2   0.0    1.5e-31  107.4   0.0    1.3  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    9.3e-32  108.0   0.0    1.5e-31  107.3   0.0    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.7e-31  107.4   0.0    2.9e-31  106.6   0.0    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      9e-31  105.0   0.1    1.4e-30  104.3   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    9.7e-31  104.6   0.1    1.4e-30  104.1   0.0    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    4.3e-29   99.6   0.0    6.5e-29   99.0   0.0    1.2  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      6e-29   99.2   0.0    1.2e-28   98.1   0.0    1.4  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    7.3e-28   95.5   0.0    1.2e-27   94.8   0.0    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    8.2e-28   95.5   0.0    1.4e-27   94.8   0.0    1.3  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.3e-27   94.4   0.0    1.8e-27   93.9   0.0    1.2  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.3e-27   94.6   0.0    2.2e-27   93.8   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.8e-27   94.2   0.0    3.5e-27   93.3   0.0    1.4  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    4.6e-27   92.9   0.0    7.2e-27   92.3   0.0    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      5e-27   92.7   0.0    7.9e-27   92.0   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.5e-26   90.4   0.1    4.7e-26   89.5   0.1    1.4  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.3e-25   87.9   0.0    2.1e-25   87.2   0.0    1.2  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    2.4e-25   87.2   0.1    3.9e-25   86.5   0.1    1.3  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.6e-25   86.4   0.1    7.9e-25   85.3   0.0    1.5  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    8.1e-25   85.5   0.0    1.5e-24   84.6   0.0    1.3  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    8.3e-25   85.6   0.0    1.6e-24   84.7   0.0    1.4  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.3e-24   84.0   0.0    4.2e-24   83.2   0.0    1.4  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.7e-24   83.4   0.0    4.4e-24   82.7   0.0    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    4.3e-24   82.8   0.0    7.5e-24   82.0   0.0    1.3  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    6.2e-23   79.1   0.0      1e-22   78.4   0.0    1.3  1  TIGR01288 nodI: nodulation ABC transporter NodI
    8.9e-23   78.4   0.8    1.5e-21   74.4   0.0    2.0  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      6e-22   76.3   0.1    1.1e-21   75.4   0.0    1.3  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    6.1e-22   75.5   0.0    9.8e-22   74.8   0.0    1.2  1  TIGR00958 3a01208: antigen peptide transporter 2
    6.3e-22   76.2   0.1    9.8e-22   75.6   0.0    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    7.9e-22   75.9   0.0    1.3e-21   75.2   0.0    1.3  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    8.4e-22   75.0   0.0    1.3e-21   74.4   0.0    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.1e-21   75.1   0.0    1.9e-21   74.3   0.0    1.4  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      3e-21   73.4   0.0    5.2e-21   72.6   0.0    1.2  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    3.6e-21   73.4   0.0    5.5e-21   72.7   0.0    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    3.7e-21   73.3   0.2      2e-20   70.9   0.1    2.0  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.8e-21   73.4   0.0    7.6e-21   72.4   0.0    1.4  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.1e-19   68.0   0.0    1.8e-19   67.2   0.0    1.3  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.6e-18   62.1   0.0    3.8e-18   61.6   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    1.3e-17   61.9   0.1      4e-17   60.2   0.1    1.7  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.3e-17   61.0   1.3    2.7e-16   57.5   0.1    2.7  2  TIGR01978 sufC: FeS assembly ATPase SufC
    5.8e-17   59.9   0.0    1.1e-16   59.0   0.0    1.3  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    8.3e-17   58.7   0.1    1.2e-12   45.0   0.0    2.2  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.3e-16   58.0   0.0      2e-16   57.3   0.0    1.1  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.3e-16   58.1   0.5    9.2e-12   42.1   0.1    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    3.1e-16   57.4   0.4    8.5e-15   52.7   0.3    2.5  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.1e-15   54.6   0.0    3.5e-15   53.8   0.0    1.2  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.8e-13   46.7   0.0    6.6e-13   45.9   0.0    1.3  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    3.7e-10   36.7   0.0    5.7e-10   36.1   0.0    1.2  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    3.3e-08   29.3   0.0    5.2e-08   28.6   0.0    1.2  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    2.8e-07   27.3   0.0    4.7e-07   26.5   0.0    1.2  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.6e-06   24.4   1.0    5.5e-06   22.7   0.1    1.9  2  TIGR00630 uvra: excinuclease ABC subunit A
    1.8e-06   23.5   0.0    2.9e-06   22.8   0.0    1.3  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
  ------ inclusion threshold ------
      0.016   12.6   0.0      0.029   11.7   0.0    1.3  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
      0.023   12.2   0.0      0.044   11.3   0.0    1.5  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
       0.03   10.4   0.1      0.045    9.9   0.0    1.2  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.0   0.0     8e-87   5.5e-85      32     318 ..     116     403 ..      89     430 .. 0.84
   2 !  161.8   3.4   8.2e-50   5.6e-48     320     613 ..     487     783 ..     439     787 .] 0.85

  Alignments for each domain:
  == domain 1    score: 284.0 bits;  conditional E-value: 8e-87
   TIGR00955  32 arkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemrai...sayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq.kgktviltiHQPsselfelfdkiillaeGrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseee.......sretiekicdaeaksklsreveentnlasg 318
                  r+ ++k++l +vsG a +Ge+lA++G+SG+GKt Lln l+ r++ ++ v   v +nG++++   m++     ayv+q d+f+++ltvr++L ++a++rl+++ t++ k   vee+++ l+L+k a+ +i        lSgGe+kR+ +++elltdP +L++DEPTsGLDs+sa  ++k+L+kla+ + kt+i++iHQPss lf+ fd++i+laeG+vvy G+p++ ++++++ +l cP+ yn ad+ +++l ++   e +         e  e ic  e++s++  + ++ t+++s 
  MMETSP1061-20121228|5033_1 116 DRQ-KKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGV---VSVNGKPLGGPDMKRLmakIAYVKQADIFFEHLTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLRLTKVAESKIR------MLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARnSHKTIITSIHQPSSALFHSFDRLIMLAEGHVVYFGRPRDTLEYLRQQKLDCPDGYNVADHWMDLLVEDSAVEDNdddegwdHSEDHESICGDEHDSTADVDPTARTSASSI 403
                 233.69*****************************************999...89******9888876511168*****************************************************9998......7***********************************************62579************************************************************997665554442222454455666677766666666665555554443 PP

  == domain 2    score: 161.8 bits;  conditional E-value: 8.2e-50
   TIGR00955 320 e...kklvkdseneekikykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylgqeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeie........lleantteecpssgeeiLeelsfeaadlaldllilvvlilvfrllaylalriri 613
                 e    +   ++++++++ky++++  q + l+ Rsl ++ r+   + + l++  ++++l gl+++++e t++ + ++++ +F+++t  +F ++f++  +f++e+ v+l+E asg Y+lsaY+++kt +e+P+ ++lpl++++i +w++ ++ +++ fl ++l+ +l+ +++ ++gll+++ + +t+ +++ + ++++ + l+gGff+  ++vP ++ w ++lS f+Y+++a l+  +++   ++        +  +    e + s  ++Le l ++   +a+++ ilv++ lv r  aylalr + 
  MMETSP1061-20121228|5033_1 487 EptlVDTRIQNDSKQESKYNTTWGLQYRTLVHRSLKNS-RSAIFTPINLVKSCALGLLSGLLWFQMEYTESRIFDRSSYFFFTMTFWVFDAMFQSFLIFPSERAVILKERASGSYQLSAYFMGKTTSEMPARLVLPLIYMIISFWLAAISDEFTMFLATTLISLLSVMAGEAIGLLVGATIYDTEKGMTAMTVISLFLALVGGFFV--ENVPYFLVWSKFLSPFKYSFDASLQLVFDKPVPCDgsgviegfC--QGS--EGTISRDDVLEFLGVQ-GSVAFNVSILVAIGLVPRYFAYLALRAKK 783
                 223322333445566778****************8776.6677999***************************************************************************************************************************************************************8..68**999***************************9766433211..222..2234456889999998.789**********************9875 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.3   0.0   5.3e-61   3.6e-59     760    1045 ..     102     380 ..      87     406 .. 0.84
   2 !   86.9   3.4   2.3e-27   1.5e-25     382     608 ..     494     715 ..     436     726 .. 0.90

  Alignments for each domain:
  == domain 1    score: 198.3 bits;  conditional E-value: 5.3e-61
   TIGR00956  760 fewrdltyevkik...kekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv..ttGvitegdrlvngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkla.daGqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFekhGaekcpeeanPAewmLevigaaagakanqDyfevwrnsseyka 1045
                  f wr+++     k   ++k+++Ld v+G+  PG++ A+mG sG Gkt Lln+L++R   + Gv+  + +  +g++++     +i Yv+q D+  e+ tvr+ L ++A++R p++ +++ k + vee+i+ll l++ a+  + +    L+   +kr+ ig eL   P  +l lDePtsGLDs +a +++k+l+kla ++ ++i+  iHqPs  l++ FDrL++l  G ++vYfG      +  +eY  ++    cp+ +n A++ ++     +    ++D  e w +s++++ 
  MMETSP1061-20121228|5033_1  102 FVWREFAVSTIGKsdrQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNpyNSGVVSVNGKPLGGPDMKR-LMAKIAYVKQADIFFEHLTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLRLTKVAESKIRM----LSGGEKKRVNIGTELLTDP-EVLLLDEPTSGLDSTSAVALMKMLQKLArNSHKTIITSIHQPSSALFHSFDRLIMLAEG-HVVYFGR----PRDTLEYLRQQK-LDCPDGYNVADHWMDLLVEDSAV-EDNDDDEGWDHSEDHES 380 
                  778877665544401145789***********************************6447899985555555555544.555789*****************************************************99976....666689*************.5667***********************9445689***********************98.*****95....566789998775.57********9777776554433.44555789999988776 PP

  == domain 2    score: 86.9 bits;  conditional E-value: 2.3e-27
   TIGR00956 382 avakkskrtrkkskytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyvrggalffallfnafsslleiasly.earpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesll 608
                 +++   + ++++sky  ++  q + +++R+l+   ++a++t i+ v+ ++ +l+ + +++++e ++s ++ r + +ff++ f  f ++ + + ++ ++r+++ k+r++  y+ sa  ++ + se+P +l+  ++++ii ++l  +  e + F+   Li++l++++  ++  ++ga++   ++ mt  +++ l l+l +gf +   +++ ++ W ++++P++y f++ l
  MMETSP1061-20121228|5033_1 494 RIQ---NDSKQESKYNTTWGLQYRTLVHRSLKNS-RSAIFTPINLVKSCALGLLSGLLWFQMEYTESRIFDRSSYFFFTMTFWVFDAMFQSFLIFpSERAVILKERASGSYQLSAYFMGKTTSEMPARLVLPLIYMIISFWLAAISDEFTMFLATTLISLLSVMAGEAIGLLVGATIYDTEKGMTAMTVISLFLALVGGFFVE--NVPYFLVWSKFLSPFKYSFDASL 715
                 444...456999******************9875.6778888999*******************************************9999998578*******************************************************************************************************96..5788888999**********865 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.0   8.2e-36   5.6e-34     321     519 ..     106     306 ..      84     318 .. 0.85

  Alignments for each domain:
  == domain 1    score: 115.8 bits;  conditional E-value: 8.2e-36
   TIGR02857 321 slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlal 519
                 +  ++ +  + + +k  +l++vs  ++pge++a++G+SG+GK++ll++l+g  + ++G ++vng++l   d + +  +ia+v+Q+ ++fe+ tv++ +         ++  + ++  +++e+++ l+  l +   ++ ++LSgG+++R+ +   ll d ++lllDEPt+ LD++++ ++++ l++la  + +t++   H++++
  MMETSP1061-20121228|5033_1 106 EFAVSTIGKSDRQKKkTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFEHlTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLR--LTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLArnSHKTIITSIHQPSS 306
                 555566666665555589*********************************************************************99866************99**9************999998..888999999*************************************************4333455555687654 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.4   0.0   4.3e-35   2.9e-33      20     219 ..     132     332 ..     117     346 .. 0.87

  Alignments for each domain:
  == domain 1    score: 113.4 bits;  conditional E-value: 4.3e-35
   TIGR02142  20 lpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee..rris...eekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHslde.varladrvvvledGrvkaagkleev 219
                  pg ++ a+ G sGsGktsl+++++G    ++g ++++g+ l   + k        +++yv q    F Hl+vr+ L Y      +++  r+++    e++i+lL + ++ e + + LsGGek+Rv ig  lL++Pe+Ll+DeP + LD+++   ++  L++l+++ +  i+   H+ +  + +  dr+++l +G+v  +g + + 
  MMETSP1061-20121228|5033_1 132 APG-EILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKR----LMAKIAYVKQADIFFEHLTVRDQLGYTAMMRLPQKwtRQMKldeVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSSaLFHSFDRLIMLAEGHVVYFGRPRDT 332
                 567.99***********************************98776543....3458**********************8665544432256652125789*******************************************************************999999999875267889***********999987665 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   0.0   7.7e-35   5.3e-33      13     232 ..     119     331 ..     108     340 .. 0.89

  Alignments for each domain:
  == domain 1    score: 112.3 bits;  conditional E-value: 7.7e-35
   TIGR02315  13 ngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkya.drivglkageivfdgasse 232
                 ++k++l+ v+    +Ge++a++G+sG+Gk+ ll ++++ +  +sg + ++gk ++   + ++++l +ki+++ q     e+ltv +     +lg++ +++   ++ ++ +  +  e+++ + l+++a+++   LsGG+++Rv i   l+ +p+++l DEP++ LD +s+  +m++l+++++++  t+i ++Hq + a  ++ dr++ l++g++v+ g +++
  MMETSP1061-20121228|5033_1 119 KKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLG---GPDMKRLMAKIAYVKQADIFFEHLTVRD-----QLGYTAMMRLPQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSSALFHSfDRLIMLAEGHVVYFGRPRD 331
                 56889999*******************************************9988...8999999**********99999999855.....67777777644444444455566677778899**********************************************************************9999865449************999876 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   1.7e-34   1.2e-32      10     221 ..     117     334 ..     108     344 .. 0.90

  Alignments for each domain:
  == domain 1    score: 111.1 bits;  conditional E-value: 1.7e-34
   TIGR03864  10 aygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrr.apkealarlGvvfqqstlDldlsveqnlryhaaLh...GlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdev..eaedrlvvlhkGkvlaqGaaaelaa 221
                 +  k+++ld+vs   a+ge+ a++Gp G+Gk+ L++ l++    ++g ++v+G+ l   + k+ +a++  v q+  +   l+v+  l y a ++     +r+   +++ee+++ l l++ ae+k+r L+GG+++rv+i   ll +P++LLlDe+t GLD +s  al++++++l+r++  +++ + h       ++ drl++l +G+v+  G++++  +
  MMETSP1061-20121228|5033_1 117 RQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGpDMKRLMAKIAYVKQADIFFEHLTVRDQLGYTAMMRlpqKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSSAlfHSFDRLIMLAEGHVVYFGRPRDTLE 334
                 556899**************************************************75277899**************************9985222566777788999*****************************************************************************9776422778***************9987665 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.0   2.2e-33   1.5e-31       8     225 ..     115     333 ..     108     341 .. 0.90

  Alignments for each domain:
  == domain 1    score: 107.4 bits;  conditional E-value: 2.2e-33
   TIGR03873   8 svraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvv...alGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaas.vcdhvvvldgGrvvaaGppaevl 225
                 s r+ +++i+d v   a +G++ +++GP GsGk+ ll+ l+G    + G v+++g+ l +   ++   ++a v+q       l+vrd +   a+ r+P   +++ + + d+  v++++    l+++a+ ++  lsGGe++rv++   l  +P++llldePt  ld ++ ++l++++++la +++ t++ ++h  + a     d++++l++G vv  G p++ l
  MMETSP1061-20121228|5033_1 115 SDRQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFEHLTVRDQLgytAMMRLPQ--KWTRQMKLDE--VEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLArNSHKTIITSIHQPSSALFhSFDRLIMLAEGHVVYFGRPRDTL 333
                 5577899*******************************************************9999*********************753226667775..5877775554..7999999***********************************************************9556789999*****99986156*****************9987 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   0.0   2.2e-33   1.5e-31       8     205 ..     118     317 ..     111     318 .. 0.86

  Alignments for each domain:
  == domain 1    score: 107.3 bits;  conditional E-value: 2.2e-33
   TIGR03608   8 fkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalkl...kkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelk.eegktiiivtHdp..evaekadrvie 205
                  k+k+il+++s     Ge++a++G sGsGK+ lLn l+  + ++sg v ++gk    l     +k l  k++y+ q     e+ tv++ l  + ++   +k +++ k ++++e+++ ++l+k  + ki  lsgGek+Rv +   ll+++e++l DEPt+ LD+ +  +++++l++l+ ++ ktii   H+p  ++ + +dr i+
  MMETSP1061-20121228|5033_1 118 QKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKP---LGGP-DMKRLMAKIAYVKQADIFFEHLTVRDQLGYTAMMrlpQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLArNSHKTIITSIHQPssALFHSFDRLIM 317
                 5789*************************************************9...5554.45556689********************8654431224556666777888999999*********************************************************9725679*******872246677777776 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.6   0.0   4.3e-33   2.9e-31      12     218 ..     120     332 ..     109     338 .. 0.90

  Alignments for each domain:
  == domain 1    score: 106.6 bits;  conditional E-value: 4.3e-33
   TIGR00968  12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrd..reiGfvfqhyalfkhltvrdniafGleir...kkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeeal.evadrivvlekGkieqvgsaeev 218
                 + ++ld+v+     G++ a++GpsGsGk++ll  ++G +  +sG + ++G+     ++++   +i +v q    f+hltvrd++ +   +r   k +++ + + vee+++l++l+k++++    lsGG+++rv +   l  +p+vllldep + ld+     l + l+kl  + + t +   h+ + al +  dr+++l +G++   g + + 
  MMETSP1061-20121228|5033_1 120 KKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRlmAKIAYVKQADIFFEHLTVRDQLGYTAMMRlpqKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSSALfHSFDRLIMLAEGHVVYFGRPRDT 332
                 56789999999999*************************************9876655542289**********************99998665666667778899******************************************************************************999973678***********999988775 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   2.1e-32   1.4e-30      15     219 ..     118     323 ..     111     324 .. 0.91

  Alignments for each domain:
  == domain 1    score: 104.3 bits;  conditional E-value: 2.1e-32
   TIGR02982  15 elrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrma..lelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdn..rildvadrivkmedGkl 219
                 +++k +l +++   +pgei+ + GpsGsGkt ll+ ++g     +G ++v gk l g + k   ++  ki y+ qa  ++e lt+++ +  +  + l +k +++ + +++ee+++ + l +  + k + lsgG k+rv i   l + P+++l dePt+ ld++s+ +++++lqklar+   ti+   h +   ++   dr++ + +G++
  MMETSP1061-20121228|5033_1 118 QKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMK---RLMAKIAYVKQADIFFEHLTVRDQLGYTamMRLPQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPssALFHSFDRLIMLAEGHV 323
                 568899*************************************************997655...55679******************99776225678999999999*****************************************************************************9999852267888999999999976 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.1   0.0     2e-32   1.4e-30     477     695 ..     118     339 ..     106     340 .. 0.92

  Alignments for each domain:
  == domain 1    score: 104.1 bits;  conditional E-value: 2e-32
   TIGR03375 477 eeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLf.yGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrts..lLelvdriivldkGrivadGpkdevlealkkg 695
                 +++k+ L++vs   +pGe +a++G  GsGK++ll+ l+g    ++G v+++g  +   d++ l ++i+yv+q    f + t+rd + + a     ++  r ++l  v+e+++     l +  + + + LSgG ++ v +   ll+dp++llLDEPts lD++s   l++ L++l++  +kT++ + H+ s  l +  dr+i+l +G++v  G     le l+++
  MMETSP1061-20121228|5033_1 118 QKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFeHLTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLR--LTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARnsHKTIITSIHQPSsaLFHSFDRLIMLAEGHVVYFGRPRDTLEYLRQQ 339
                 567888999***************************************************************98888356*******************************9875..45555566799*********************************************998789********9643399******************998888888876 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.0   9.5e-31   6.5e-29       9     213 ..     124     334 ..     119     443 .. 0.83

  Alignments for each domain:
  == domain 1    score: 99.0 bits;  conditional E-value: 9.5e-31
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenlellgel...yglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkla.drvaiidkGkiiaedtpeeLKe 213
                 +d+v+     ge+++++GP G GKt +++ L++  + +sG + v+G  +   + +++  +i+ v q     e+Lt r++l  ++ +   +   ++++ + +ee++ l+ l++ a+ k++ +sgG ++r+++++ l+++Pevl LDEPt+GLD++++ a+ +++++l ++  +ti+ + h+   a   + dr++++ +G+++ ++ p++  e
  MMETSP1061-20121228|5033_1 124 LDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGpDMKRLMAKIAYVKQADIFFEHLTVRDQLGYTAMMrlpQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNsHKTIITSIHQPSSALFHSfDRLIMLAEGHVVYFGRPRDTLE 334
                 5667777778************************************98753144577899********************8877661113344445556678999999**********************************************************999566777777877777544349***********9998876544 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   1.8e-30   1.2e-28      14     222 ..     118     332 ..     106     339 .. 0.89

  Alignments for each domain:
  == domain 1    score: 98.1 bits;  conditional E-value: 1.8e-30
   TIGR03265  14 feaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkr..dyGivfqsYaLfPnltvaeniayGLkn...kklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealsla.DrivvmnkgkieqvgtPeei 222
                  ++ t+l+++s   + ge+++++GPsG Gkt+LL +++G +  ++G + ++g+ +     ++       v q+  +f  ltv++ ++y       +k +r+   + vee++ l+ l++++e     lsGG ++rv ++  l + P++LLLDeP s LD+   + L + l+kl r+   t i   h+   al  + Dr++++ +g++   g P++ 
  MMETSP1061-20121228|5033_1 118 QKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLmaKIAYVKQADIFFEHLTVRDQLGYTAMMrlpQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSSALFHSfDRLIMLAEGHVVYFGRPRDT 332
                 4577899**********************************************998644443222567789*****************9765111577788888899999*********99999******************************************************************98766****************9875 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.0   1.8e-29   1.2e-27       7     197 ..     130     327 ..     110     347 .. 0.90

  Alignments for each domain:
  == domain 1    score: 94.8 bits;  conditional E-value: 1.8e-29
   TIGR01184   7 eikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmv.....vfqnysllpwltvreni.alavdavlrdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeallls.drvvmltngpaakig 197
                     ge+++++g sg gk++lln ++g +   sg v+++gk +  p  +r++     v q   ++  ltvr+++ + a+ +  ++ +++ + + vee i l+ l++ a+ ++  lsgg k+rv i   l + p++llldep   ld+ +   l + l k++++++ t++   h+   al+ s dr++ml++g   + g
  MMETSP1061-20121228|5033_1 130 YAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMakiayVKQADIFFEHLTVRDQLgYTAMMRLPQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSSALFHSfDRLIMLAEGHVVYFG 327
                 5678********************************************998633333556667899*******9456778888889999999****************************************************************************************988********9876665 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.0     2e-29   1.4e-27      13     212 ..     119     325 ..     107     365 .. 0.86

  Alignments for each domain:
  == domain 1    score: 94.8 bits;  conditional E-value: 2e-29
   TIGR03522  13 gkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlk.nslevrkniGylPehnPlyldlyvreylefsaaly...klkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakd..ktvilsthimqeveal...cdrviiinkGkiva 212
                  k+ +ld+vs  a +Gei+ ++GP G+Gk++l+  l+g  + +sG v v+g+     + ++   +i y+ + + +++ l vr+ l ++a +    k + +++ ++vee+i+l  l++ +  ki  ls G ++rv +   ll dP+vl+ldePt+Gld    v++ ++++++a++  kt+i s h  q   al    dr+i++ +G++v 
  MMETSP1061-20121228|5033_1 119 KKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGpDMKRLMAKIAYVKQADIFFEHLTVRDQLGYTAMMRlpqKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNshKTIITSIH--QPSSALfhsFDRLIMLAEGHVVY 325
                 46779***********************************************986526677899************************99852225666777889******************************************************************9863378887766..66666622258889999998885 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0   2.7e-29   1.8e-27     317     542 ..     107     334 ..     102     336 .. 0.87

  Alignments for each domain:
  == domain 1    score: 93.9 bits;  conditional E-value: 2.7e-29
   TIGR01842 317 levenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPq.dveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegG.aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarki.tvvvithrps..llelvdkilvlkdGalkafGereevlk 542
                  +v+++     ++kk++l  +s    +Ge+la++GpsgsGk+sL  +l G  +++sG v ++g  l   d ++l  +i Y+ q d+   + tv + +        ++k     kl +v e+i  l     t+++e+    LsgG ++R+ +   l  dP +++LDeP + LD++  +al+k l++l ++   t+++  h+ps  l ++ d++++l +G++  fG+ ++ l+
  MMETSP1061-20121228|5033_1 107 FAVSTIGKSDRQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQaDIFFEHLTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLRL---TKVAESKiRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHkTIITSIHQPSsaLFHSFDRLIMLAEGHVVYFGRPRDTLE 334
                 56777888888999********************************************************************945655567****9998888789****************965553...5555543157********************************************98766550555556887533789*****************9887765 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0   3.2e-29   2.2e-27      12     217 ..     120     330 ..     114     341 .. 0.85

  Alignments for each domain:
  == domain 1    score: 93.8 bits;  conditional E-value: 3.2e-29
   TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelg.lealkkk.ekkip.eeiyelFPv..lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillv.eqvldfaleladrylvlerGevvaegeke 217
                 + ++l +vs  ++ ge++a++G  g Gkt+ll +l g  + +sG ++++g+ +   +  +r  a iayv q    f +ltv++ l  + +  l++k +++++ +e+ e+  +  l+++ + +   LsGG ++ + i+  L+t+P++llLDePt G+       + k++++la++++ +i+ +  q  +   +  dr+++l +G+vv  g+ +
  MMETSP1061-20121228|5033_1 120 KKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGG-PDMKRLMAKIAYVKQADIFFEHLTVRDQLGYTaMMRLPQKwTRQMKlDEVEEIIRLlrLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSiHQPSSALFHSFDRLIMLAEGHVVYFGRPR 330
                 568999**********************************************986.667899999********************755155556656444433777777666115688899999*********************************9999999*********999999986156666667889***********9988655 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0   5.1e-29   3.5e-27      16     219 ..     131     334 ..     118     339 .. 0.92

  Alignments for each domain:
  == domain 1    score: 93.3 bits;  conditional E-value: 5.1e-29
   TIGR01186  16 ieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislg..lel.lkideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldeal.rlgdrivilkaGeivqvGtPdeilr 219
                  + Gei+ ++G+sGsGk++l+  l       +G + ++G+ +   + ++l      kia+v q   +f h t+ d + ++  ++l +k+ +q + +   e ++l+ l + +++    lsGG ++rv +   l ++P++ll+de+ s ld      l + l+kl ++ +kti+   h    al +  dr+++l +G++v  G P + l+
  MMETSP1061-20121228|5033_1 131 AAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRL----MAKIAYVKQADIFFEHLTVRDQLGYTamMRLpQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSSALfHSFDRLIMLAEGHVVYFGRPRDTLE 334
                 578*********************9998899*******************....89********************99872244567999999999**********************************************************************************99983567*****************99875 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   1.1e-28   7.2e-27      13     198 ..     119     305 ..     110     322 .. 0.84

  Alignments for each domain:
  == domain 1    score: 92.3 bits;  conditional E-value: 1.1e-28
   TIGR02673  13 agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvala..levr.gkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrG.ttvivathdee 198
                 ++ ++L++vs    +ge+l ++G+sG+Gkt+ll+ l g++  ++G v+v+g+ +    + ++  l  ki+ v q   ++++ tv + +  +  +++  +++++    +vee+++l+ l++ a+ + + lsgGe++Rv i   ++++Pe+ll DePt  lD++ +  ++++l++l ++   t+i + h+ +
  MMETSP1061-20121228|5033_1 119 KKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLG---GPDMKRLMAKIAYVKQADIFFEHLTVRDQLGYTamMRLPqKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNShKTIITSIHQPS 305
                 56789999*******************************************9865...667778889********9**********9865511455414445555689*****************************************************************98765278999999865 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.0   0.0   1.2e-28   7.9e-27      19     226 ..     119     331 ..     113     339 .. 0.89

  Alignments for each domain:
  == domain 1    score: 92.0 bits;  conditional E-value: 1.2e-28
   TIGR03258  19 garvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykr...nlallvqnyalfphlkveenvafG..lr.arkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvla.dkillmkeGslialGetra 226
                 + +++ld +s    +Ge+la++G+sGsGkt+ll  ++G    + G + v ++ l   p  kr   ++a + q   +f hl+v +++ +   +r  +k ++    + v + ++l++l+ +a+     lsGG ++rv +   l  +p+vllldep s ld+    ++++ l++l r+  + t++   h+ + al  + d++ ++ eG+++ +G +r+
  MMETSP1061-20121228|5033_1 119 KKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLG-GPDMKRlmaKIAYVKQADIFFEHLTVRDQLGYTamMRlPQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARN-SHKTIITSIHQPSSALFHSfDRLIMLAEGHVVYFGRPRD 331
                 6789************************************************997.589999333456788999***********988722342467777777789******************************************************************987.5679999********98754999999**********997 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.5   0.1   6.8e-28   4.7e-26       1     188 [.     139     332 ..     139     339 .. 0.90

  Alignments for each domain:
  == domain 1    score: 89.5 bits;  conditional E-value: 6.8e-28
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekr...svnvvfqsyaLfPhmtveenvafgLkmr...kvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtms.driavlrkGkiaqigepeei 188
                 ++GpsGsGkt lL  l+G +  +sG + ++g+ +   p  kr   ++  v q+  +f h+tv + + +   mr   k  ++   + v+e+++l +l+++a++k+  lsGG ++rv +   +   P++LLlDep s LD      + + l++l ++   t++   h  + al  s dr+ +l +G+++  g p++ 
  MMETSP1061-20121228|5033_1 139 MMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGG-PDMKRlmaKIAYVKQADIFFEHLTVRDQLGYTAMMRlpqKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSSALFHSfDRLIMLAEGHVVYFGRPRDT 332
                 68******************************9975.44444233788999*****************998862225556666678999****************************************************9999999***********************9877***************99975 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.0   3.1e-27   2.1e-25     350     557 ..     118     328 ..      81     338 .. 0.86

  Alignments for each domain:
  == domain 1    score: 87.2 bits;  conditional E-value: 3.1e-27
   TIGR02204 350 rpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaa.svleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergv.tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk..grttlviahrL..atvlkadrivvldkGriveqGt 557
                 + +++ ld ++    pGe +a++GPsG+Gk+ ll+ l      +sG ++++G +l   d + l +++a v+q    f +  v++ + y  +    ++ ++  k  e +e i+ l     t++ e  + +LsGG k+r+ i   +l d  +LLLde ts Ld+ s  ++ + l++l +  ++t +   h+   a   + dr+++l +G++v  G 
  MMETSP1061-20121228|5033_1 118 QKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFEHlTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLR---LTKVAESKIrMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARnsHKTIITSIHQPssALFHSFDRLIMLAEGHVVYFGR 328
                 445778999****************************9999999****************************99999874799****************************9997...588999877369********************************************986215666666787611456789************9886 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.1   5.7e-27   3.9e-25      13     219 ..     116     323 ..     108     325 .. 0.88

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 5.7e-27
   TIGR02211  13 egkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssne.raklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthd..lelakkldrvlelkdgkl 219
                 + +++ ++l+ vs     ge++a++G sGsGk+ ll  l+g +   sG v ++Gk l     ++ +ak+   k   i+ f hl      l   am  l +k  ++   ++ +e+++ + l k ++ k   lsGGe++rv i   l+++P+++l dePt+ ld+++a +++++l++l ++++ +++   h+  + l + +dr++ l +g++
  MMETSP1061-20121228|5033_1 116 DRQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRlMAKIAYVKQADIF-FEHLTVR-DQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQpsSALFHSFDRLIMLAEGHV 323
                 55677899************************************************9876544426677777777776.6666544.56888899999999999999999***************************************************************************9999822468899999999999976 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.3   0.0   1.2e-26   7.9e-25       4     185 ..     120     302 ..     118     306 .. 0.84

  Alignments for each domain:
  == domain 1    score: 85.3 bits;  conditional E-value: 1.2e-26
   TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgpl.nlGlseaeve..rrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklree.Gktvvisth 185
                 +  +l++++  +  ge la++G+ G+Gk+ ll++l+G    +sG v ++G++l     ++ +l  k+a+v q +d  +   +v + + ++ +  l  +  +      v+e ++++ +++++e  +++lsgGekkrv i + +   p+vllldePt+gld++ a  l+++l+kl  +  kt++ s h
  MMETSP1061-20121228|5033_1 120 KKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLG--GPDMKRLMAKIAYVKQ-ADIFFEHLTVRDQLGYTAMmRLPQKWTRQMklDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNsHKTIITSIH 302
                 5568999999999**************************99***********97..4567777789999977.44444456888889887541455443332212579*****************************************************************7651577888878 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0   2.3e-26   1.5e-24      11     186 ..     119     302 ..     114     311 .. 0.87

  Alignments for each domain:
  == domain 1    score: 84.6 bits;  conditional E-value: 2.3e-26
   TIGR01189  11 gervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelae.qrdelaeellylgHldglKaeLsalEnLkfyaallq......seqk.tveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                  ++++l ++s + a+Ge+l++ Gp G+GKt+LL  l+G  + +sG v++n+k+l     ++l  +++y+  +d   ++L++++ L + a +        + ++ +vee +  + L+++++  +++Ls G k+R+ ++  ll+   + +LDEPt  lD ++   l+++l++ +++   +++++ +
  MMETSP1061-20121228|5033_1 119 KKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGpDMKRLMAKIAYVKQADIFFEHLTVRDQLGYTAMMRLpqkwtrQMKLdEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIH 302
                 56789***********************************************997513456779**********************9876654334432233357888899999*****************************************************99999888888887643 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   2.4e-26   1.6e-24       4     199 ..     132     332 ..     130     341 .. 0.82

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 2.4e-26
   TIGR03771   4 dkGellgllGpnGaGkttllrailglikvakGsvkvagkssr.....kgrreiGyvpqrhefawdfpidveqtvlsGragliGllrr.pkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegt.ailmtthdlaeav.atcdrvvll.ngrvvadgapdql 199
                  +Ge+l+++Gp G+Gkt+ll ++ g  + + G v v+gk+ +     + +++i yv q   f     + v++ +  G + ++ l ++ +++     v++ ++  +lt++a+  +  lsGG+++rv +   l ++p++llldep +Gld  s   l++++++la + + +i+ + h+ + a+ ++ dr+++l +g+vv  g p + 
  MMETSP1061-20121228|5033_1 132 APGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGgpdmkRLMAKIAYVKQADIFFEH--LTVRDQL--GYTAMMRLPQKwTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHkTIITSIHQPSSALfHSFDRLIMLaEGHVVYFGRPRDT 332
                 68************************************975311111446789999999888554..4455443..5555555433314455667899*****************************************************************98652788899*9998864889**886637999999999875 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.2   0.0   6.2e-26   4.2e-24      22     209 ..     132     325 ..     114     328 .. 0.86

  Alignments for each domain:
  == domain 1    score: 83.2 bits;  conditional E-value: 6.2e-26
   TIGR01277  22 eaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyer...pvsmlfqennlfahltvrqniglGlkpglklnavqk...ekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsda.aaiasqvvvvedGkikv 209
                 + Ge++a++G+sG+Gk++lln ++G     sG + vn+k   + +  +r    ++ + q + +f hltvr+ +g      l  +  ++   ++ve++ r + +++  e     lsGG+++rv +   l+ +  +llldep s ld +  + ++ +++kla + ++t++   h++s a   + ++ +++++G++ +
  MMETSP1061-20121228|5033_1 132 APGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPL-GGPDMKRlmaKIAYVKQADIFFEHLTVRDQLGYTAMMRLPQKWTRQmklDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSSAlFHSFDRLIMLAEGHVVY 325
                 679************************99*********975.556667612245567799999*********9988766665444444112667888899999999999999*************************************************************987626899*********9975 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   6.5e-26   4.4e-24     342     556 ..     117     333 ..     103     337 .. 0.87

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 6.5e-26
   TIGR02203 342 pgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFdd.tiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlvia..hRLst..iekaDrivvlddGkiverGtheeLl 556
                 +++++ +lds+s  +++Ge++a++G+sGsGk++l+n l+     +sG + ++g++l    ++ L +++a+v q  + F+  t+ + ++Y+++  ++++  +  ++   +++++  l   l +   ++   LsGG ++R+ i   ll d  +L+LDe ts LD+ s  ++ + L++l ++    +i   h  s    +  Dr+++l +G++v  G  ++ l
  MMETSP1061-20121228|5033_1 117 RQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFEHlTVRDQLGYTAMMRLPQKWTR-QMKLDEVEEIIRLLR--LTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITsiHQPSSalFHSFDRLIMLAEGHVVYFGRPRDTL 333
                 5677899******************************************************************999998769**********998887655.567778899998776..55556677788**********************************************99865544432388775335788************998777766 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   1.1e-25   7.5e-24     345     527 ..     118     299 ..      89     304 .. 0.86

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 1.1e-25
   TIGR02868 345 pgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlF.dttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvt 527
                 ++++++l+ vs  ++pGe +a++G+sG+GK+ Ll+ l g  + ++G v+++g ++   + + + + +++++q    F + tvr+ l   +     +  ++ ++  + ++ +r L+  l  + +++ ++lSGGe++R+ +   Ll+d +vllLDEPt +LD + + +l+++L +  ++  + ++t
  MMETSP1061-20121228|5033_1 118 QKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFeHLTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLR--LTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIIT 299
                 445559*****************************************************************988888446******99999999999999998888899998876..44444556789*******************************************9555444444443 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.4   0.0   1.5e-24     1e-22       4     223 ..     108     333 ..     105     345 .. 0.85

  Alignments for each domain:
  == domain 1    score: 78.4 bits;  conditional E-value: 1.5e-24
   TIGR01288   4 aidlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenl..lvfgryfglstreie.evipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllar.gktilltthlmeeae.rlcdrlcvleagrkiaegrpdali 223
                 a+  +g s    +k +++ +s   a ge + ++gp g+gk+++   + g  + + g ++v g+p  +  ++   aki  v q d + + +tvr++l    + r  +  tr+++ + +  ++ + rl   a+ ++  lsgg k+r+ + + l+ dp++l+ldept+gld  +   + + l+ l     kti+ + h    a     drl +l +g  +  grp   +
  MMETSP1061-20121228|5033_1 108 AVSTIGKSDRQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGpDMKRLMAKIAYVKQADIFFEHLTVRDQLgyTAMMRLPQKWTRQMKlDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNsHKTIITSIHQPSSALfHSFDRLIMLAEGHVVYFGRPRDTL 333
                 66666777777899*************************************************986524555679******************99722234455556788886457899999***********************************************999999999988764326999999999888752568****************97654 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   2.2e-23   1.5e-21     462     669 ..     117     330 ..     106     335 .. 0.83
   2 ?    2.2   0.2      0.15        10     125     191 ..     625     690 ..     593     700 .. 0.78

  Alignments for each domain:
  == domain 1    score: 74.4 bits;  conditional E-value: 2.2e-23
   TIGR03797 462 ekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsg.sileniaggasltldeawea.armagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklk....vtRiviAHRLST..irnadrilvleeGrvveqGsye 669
                 ++  +++Ld+vs  + pGe +a++G+SGsGK +ll  L g +  +sG v+  G+ l + d++++  ++  V Q   ++   ++ + +  +a++ l + w+  +++  +ee i+ +   l  v +     lSGG ++R+ i   l + P++ll+DE TS LD ++  + ++ l+kl+     t i   H  S    +  dr+++l+eG+vv  G  +
  MMETSP1061-20121228|5033_1 117 RQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFEHlTVRDQLGYTAMMRLPQKWTRqMKLDEVEEIIRLL--RLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLArnshKTIITSIHQPSSalFHSFDRLIMLAEGHVVYFGRPR 330
                 677899*******************************************************************988776526777888888899999997515555666666654..455555556789********************************************9952222455666799876224678************999765 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.15
   TIGR03797 125 dllkfalrgaerdllavllvgllgtllglvvPlatgilldeviPdaerslllqvalallaaalgall 191
                  +++f l + + ++++ l+ + l++ll+++   a g+l++  i d+e++  +  ++ l++a +g + 
  MMETSP1061-20121228|5033_1 625 MIISFWLAAISDEFTMFLA-TTLISLLSVMAGEAIGLLVGATIYDTEKGMTAMTVISLFLALVGGFF 690
                 5677777777777777665.566799*******************9998766665555555555544 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   1.5e-23   1.1e-21       8     207 ..     116     328 ..     109     339 .. 0.83

  Alignments for each domain:
  == domain 1    score: 75.4 bits;  conditional E-value: 1.5e-23
   TIGR03740   8 kkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlk....kiGsliesPalyenltarenlkvrtlll.......glpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekG.itvilsshils.evelladhiGiiseGklkyekk 207
                  + kk++++++vs      ++ +++Gp G+Gk++ll  l+G    +sG + ++g+++   d+k    ki  + ++   +e+lt r+ l  +++++       +++ +++ee+++++ l++    k + +s G k+r+ i   ll +P++l+ldePt Gld      l ++++ + ++   t+i s h  s  + +  d + +++eG++ y ++
  MMETSP1061-20121228|5033_1 116 DRQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKrlmaKIAYVKQADIFFEHLTVRDQLGYTAMMRlpqkwtrQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNShKTIITSIHQPSsALFHSFDRLIMLAEGHVVYFGR 328
                 567899*************************************************998766651111566666788899*********98877642222222667788999999999999999************************************************999887625788888976515678889999999999988665 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   1.4e-23   9.8e-22     493     696 ..     120     328 ..     116     339 .. 0.89

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 1.4e-23
   TIGR00958 493 dkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsg.svreNiaYGltktedeevtaaakaanahdFiselekgydtevge.kGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLs..tvekadkilvlkkgsvvelGt 696
                 +k +l   +   +pGe+ a+ GPsGsGK +    l      ++G v + gkpl   d k l  k+a V+q  + f+  +vr+ + Y       ++ t   k   +++ i  l     t+v e k  +lsgG k+r+ i   L+ +P vL+LDe tS LD+    +  ++lq+  +++ +t++   h+ s  + +  d+ ++l +g+vv  G+
  MMETSP1061-20121228|5033_1 120 KKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFEHlTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLRL---TKVAEsKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDStsavALMKMLQKLARNSHKTIITSIHQPSsaLFHSFDRLIMLAEGHVVYFGR 328
                 6778888888899**********************9887779*********************************8659*******9998889999999999999999998874...56655267899*******************************9777777888999999999****999987633678999********9998876 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.6   0.0   1.4e-23   9.8e-22       9     214 ..     114     321 ..     107     323 .. 0.84

  Alignments for each domain:
  == domain 1    score: 75.6 bits;  conditional E-value: 1.4e-23
   TIGR00960   9 kaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvala..lriiGvkgreie.ervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraG.ttvlvathde.nlveskrkrvltlskG 214
                 k+ +  ++  ld v+     Ge+  ++G+sG+Gk++ll+ ++g++  ++G + v+g++l+   + ++  l  +i  v q   ++++ tv d +  +  +r+  + +r+++ + v++ ++ + l++ a++    lsgGe++rv+i   ++ +P++ll dePt+ ld+  +  ++++l+++ r    t++ + h+  + + +   r++ l +G
  MMETSP1061-20121228|5033_1 114 KSDRQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLG---GPDMKRLMAKIAYVKQADIFFEHLTVRDQLGYTamMRLPQKWTRQMKlDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNShKTIITSIHQPsSALFHSFDRLIMLAEG 321
                 5556667789999**9*****************************************987...5667778999******************98664225666777777764679999**************************************************************99762577778886413344445566666666 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.2   0.0     2e-23   1.3e-21      18     197 ..     124     297 ..     120     331 .. 0.83

  Alignments for each domain:
  == domain 1    score: 75.2 bits;  conditional E-value: 2e-23
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvv 197
                 l+++s + ++ge+ +++Gp G+Gkt ll+ ++G+   ++G v ++gk l + + +++  + i+   q+   fe+ltv++ l  ++ +     +l ++ +++ + +++ee+++l++L++ a++k  +Ls G+k++++ig  l+ +p++lllDeP++G+ ++      ++l++la++    +
  MMETSP1061-20121228|5033_1 124 LDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRL-MAKIAYVKQADIFFEHLTVRDQLGYTAMM-----RLPQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTI 297
                 5677778899**************************************998777665.56799999*************99765433.....33334456778899******************************************************************98643322 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   1.9e-23   1.3e-21     467     675 ..     118     329 ..     106     340 .. 0.89

  Alignments for each domain:
  == domain 1    score: 74.4 bits;  conditional E-value: 1.9e-23
   TIGR01846 467 edspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdnialakPaiseekviaaaklaGahdfiselkqGyetevge.kGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickg..rtviiiahrlst..vraadrilvlekGkivesGkh 675
                 + + ++l+ +s   ++Ge++ ++GpsGsGk+ l   l   +  + G v v+g+ l+  d + l  +++ v q +++f+  ++rd +  +      +k     kl   ++ i  l+    t+v e k   lsGG ++r+ +   l+++P +l+lde ts ld  s  ++m+ l++++++  +t+i+  h+ s+   ++ dr+++l +G++v  G+ 
  MMETSP1061-20121228|5033_1 118 QKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFEHlTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLRL---TKVAEsKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNshKTIITSIHQPSSalFHSFDRLIMLAEGHVVYFGRP 329
                 6678899999*9*************************999999**********************************8758*****9998888889999999*******9999985...6777625678***********************************************9755799999998764224778***********988875 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.0   2.7e-23   1.9e-21      48     257 ..     132     337 ..     120     473 .. 0.71

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 2.7e-23
   TIGR03415  48 eeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvak...aerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldeal.klGnriaimegGrivqlgtpeeivlkPa 257
                 + Geil +mG sGsGk+sll ++ g np   G v+v+ +        +   ++++l + +++ v q   ++  +tv++ +++   ++   k   + + ++vee ++l+ l++ a+ k+  lsGG ++rv +   + t+ ++ll+deP s ld      l   l +l ++ +kti+   h    al +  +r+ ++ +G++v  g p++ +    
  MMETSP1061-20121228|5033_1 132 APGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGK-------PLGGPDMKRL-MAKIAYVKQADIFFEHLTVRDQLGYTAMMRLPQKwtrQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSSALfHSFDRLIMLAEGHVVYFGRPRDTLEYLR 337
                 67*******************************999754.......3445566666.678**********************998865544100455577899999***************************************************************************99973567899999***********99765433 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   7.6e-23   5.2e-21     488     696 ..     122     333 ..     115     337 .. 0.86

  Alignments for each domain:
  == domain 1    score: 72.6 bits;  conditional E-value: 7.6e-23
   TIGR01193 488 evledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsG.silenlllgakenvsqeeikkaveiaeikddieklplGyqtelseea.ssisgGqkqrlalarallsdskvlildestsnldl...ltekkivenllklkdktiifvahrlsva..kksdkiivldeGkiieqGshkell 696
                  +l+ +s      e ++++G sGsGk++l   l +    +sG +++ngk l   d ++l   i+y+ q  + f+  ++ + l   a  ++  ++ ++ +++ e+++ i+ l l   t+++e+    +sgG k+r+ +   ll+d +vl+lde ts ld    +   k++++l + ++ktii   h+ s a  +  d++i+l eG+++  G  ++ l
  MMETSP1061-20121228|5033_1 122 TILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFEHlTVRDQLGYTAMMRLP-QKWTRQMKLDEVEEIIRLLRL---TKVAESKiRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDStsaVALMKMLQKLARNSHKTIITSIHQPSSAlfHSFDRLIMLAEGHVVYFGRPRDTL 333
                 678888888888999*******************************************************999873677777777777766.5678899*****999998887...67776651579*******************************722256678999999999*********9876633789************998776655 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0   8.1e-23   5.5e-21      15     200 ..     118     303 ..     108     328 .. 0.87

  Alignments for each domain:
  == domain 1    score: 72.7 bits;  conditional E-value: 8.1e-23
   TIGR02314  15 dkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe 200
                 +kk + ld vs +   g+i+ ++g sg+gk++l+ c+   +   sg v v+gk l   +   l+++   +      f+ l+ r  +g  a+    ++ +++     v+e++ l+ l++  +s    lsgg+k+rv i   l ++p vll de ts ld +++ +++++l+++ r+   ti+   h+
  MMETSP1061-20121228|5033_1 118 QKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFEHLTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQ 303
                 566788*********************************9999***********9998888888877777776667889999999999997544445555555578***********************************************************************999987775 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.1     3e-22     2e-20       9     240 ..     117     338 ..     108     342 .. 0.86

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 3e-22
   TIGR03005   9 rfgeltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGva..raeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfar.efadrvlffdkGkiveeGkpdeifrkpke 240
                 r ++ t+ld ++   a+Ge +a++GpsGsGk+++l  l   ++ + G + v+g+ l                 ++++  ki  v q   +f h tv d++  + ++ +  +  r    +   e++ ++ l++ a++    lsGG+k+rv i   l   p vll+de+ts ld      ++++l++la + + t++   h+   a  +  dr++++  G++v  G+p + ++  ++
  MMETSP1061-20121228|5033_1 117 RQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGG-------------PDMKRLMAKIAYVKQADIFFEHLTVRDQLGYTAMMRLPQKwtRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSSALfHSFDRLIMLAEGHVVYFGRPRDTLEYLRQ 338
                 677889*********************************************7765533.............34678889********************99887776554411444556667788888888888999999************************************************************988751445*****************998876665 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.4   0.0   1.1e-22   7.6e-21      14     236 ..     121     338 ..     115     342 .. 0.84

  Alignments for each domain:
  == domain 1    score: 72.4 bits;  conditional E-value: 1.1e-22
   TIGR00972  14 kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayg..lrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnmqqaarvs.dktaffleGelveegeteqifekpke 236
                 k+ l+ v+      ++ a++GpsG+Gk++ll +l   n  +     +G v ++gk +     d+++l +k+  v q    f   ++ d + y+  +rl +  +++   + vee ++   l       ++++   LsGG ++r+ i   l ++PevlLlDePts LD++++  + +++q+L+++   ti+   h+ + a   s d+ ++++eG++v  g++++ +e  ++
  MMETSP1061-20121228|5033_1 121 KTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYN-----SGVVSVNGKPLGGP--DMKRLMAKIAYVKQADIFFEhLTVRDQLGYTamMRLPQKWTRQMKLDEVEEIIRLLRLT----KVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNshKTIITSIHQPSSALFHSfDRLIMLAEGHVVYFGRPRDTLEYLRQ 338
                 566777777788899******************99888777.....899********998..9999************9998789*****9994456655555555555678888877777....344556678**********************************************98754688888899888875555************99998887766555 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   2.7e-21   1.8e-19     491     694 ..     120     328 ..     109     338 .. 0.83

  Alignments for each domain:
  == domain 1    score: 67.2 bits;  conditional E-value: 2.7e-21
   TIGR03796 491 eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdq.divlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr..Rgc..tciivaHRLst..iRdcdeiivlerGkvverGt 694
                 ++ +++ +s    pG+ +A++G+sGsGk  +   ++G     sG + ++gkp+     + l++ +a+v+q di++ + tvrd l         ++ +r +k   +++ i  +   +++  +   + lsGG+++R++i   L ++P +L+lDE ts LD++   a+++ l++  R+   t+i   H  s+      d++i+l +G+vv  G+
  MMETSP1061-20121228|5033_1 120 KKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQaDIFFEHLTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLR--LTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKlaRNShkTIITSIHQPSSalFHSFDRLIMLAEGHVVYFGR 328
                 5667777777889*******************************************************9956777778******98877766777888888888998886654..55555566789*********************************999888877654334431144444598776334789************9887 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   5.6e-20   3.8e-18     957    1144 ..     135     329 ..     121     334 .. 0.86

  Alignments for each domain:
  == domain 1    score: 61.6 bits;  conditional E-value: 5.6e-20
   TIGR01257  957 qitaflghngagktttlsiltgllpptsgtvlvggkdiet.nldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaql...emeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllky..rsgrtiimsthhmdeadllg.driaiisqgrlycsgtp 1144
                  +i a++g  g+gkt+ l  l+g  p  sg v v gk +   ++  +   +  + q +i+f hltv +++ + a ++   +   q+   e+e ++    l +  + + + lsgg ++++ +   ++ d  v++ldeptsg+d  s  ++  +l k    s +tii s h+   a +   dr+ ++++g++   g p
  MMETSP1061-20121228|5033_1  135 EILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGpDMKRLMAKIAYVKQADIFFEHLTVRDQLGYTAMMRLPQKWTRQMkldEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLarNSHKTIITSIHQPSSALFHSfDRLIMLAEGHVVYFGRP 329 
                  6899*********************************975378999999*********************9998876544444441135677777777888888899********************************************9885326899*******999987764499999999998777665 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.1   5.9e-19     4e-17      20     208 ..     120     303 ..     108     310 .. 0.79

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 5.9e-19
   TIGR02324  20 klpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikea.kargaaligifhd 208
                 k  +l++vs  ++ Ge++a++G+sG+Gk +ll +l +    +sg + v+ +      +k    ++ +v++++i +    L v  ++    ++    l + ++r+    +++e+++ l++  ++ +      sGGek+Rvni   l++d  +LLLdePt+ Ld++   + +++++++ +++  ++i+ +h+
  MMETSP1061-20121228|5033_1 120 KKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFF--EHLTVRDQLGYTAMM---RLPQKWTRQMKLDEVEEIIRLLRL-TKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLaRNSHKTIITSIHQ 303
                 5677889999999************************99999999999875433323344455677777777755..344444444333333...333467888888999999999999.67888888999***********************************99****999615567788888885 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.1     4e-18   2.7e-16      11     228 ..     119     328 ..     115     340 .. 0.79
   2 ?   -2.6   0.0       9.5   6.5e+02     174     214 ..     427     467 ..     426     469 .. 0.81

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 4e-18
   TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliit.hyerllelikPdvvhvlldGrivksGd 228
                 ++k+iL++++    +Ge+ a+mGp GsGk  L + l+g++ y+  sG ++++g+ l   +++    a +    qa      +++++ l  ++  +  ++ +++++l e    ++e ++ll+l++  +e ++    sGGekkr +i   +l +P++ +LDe  sGlD  +  +++++++kl+++++ ++i + h+       + d + +l++G++v  G 
  MMETSP1061-20121228|5033_1 119 KKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYN--SGVVSVNGKPLGGPDMKRLM-AKIAYVKQADIFFEHLTVRDQLGYTAMMRLPQKWTRQMKLDE----VEEIIRLLRLTKV-AESKI-RMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSiHQPSSALFHSFDRLIMLAEGHVVYFGR 328
                 5799************************************996..9********99887766544.444445677777888888888877776666566666666555....5555566665543.33333.347*********************************************999777777661544444445579999999999998875 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 9.5
   TIGR01978 174 GlDvDalkivaegvnklreeekalliithyerllelikPdv 214
                 G+ v a   v+ +v++l+++ + ++ +t  +rl+++   +v
  MMETSP1061-20121228|5033_1 427 GIPVTAEINVTGNVERLQRNPSRTISVTKRQRLIRAWDGEV 467
                 55666777799999****9999999*******998776665 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   1.6e-18   1.1e-16      20     230 ..     117     324 ..     103     333 .. 0.77

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 1.6e-18
   TIGR02769  20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsi....savnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlr.lvqkfaqrvlvldeGqiv 230
                 ++++k++ld vs     Ge +a++G sG+Gk+ l   l G +  ++G vs +G++l    + ++k++  ++  v q  i     +v  +    ++++ P +      +  + + ++e+++l+ l + v++ + r lsGG  +r+ni   l  +P++++lde  s ld    ++++++l+kl +++  +++   h  + +  +  +r+++l eG++v
  MMETSP1061-20121228|5033_1 117 RQKKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLG---GPDMKRLMAKIAYVKQADIffehLTVRDQLGYTAMMRLPQKWT----RQMKLDEVEEIIRLLRLTK-VAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSsALFHSFDRLIMLAEGHVV 324
                 567899*************************************************86...4455666666666655332000023444455555555554444....4444555556666666654.45555678***********************************************9999999888887651445566999999999988 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   0.00024     0.016      12      53 ..     120     161 ..     113     168 .. 0.86
   2 !   45.0   0.0   1.7e-14   1.2e-12     151     259 ..     222     335 ..     177     348 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00024
   TIGR03269  12 glevlknisleleeGevlGilGksGaGksvllhllrGldeye 53 
                  +++l ++s     Ge+l ++G sG+Gk+ ll+ l G + y+
  MMETSP1061-20121228|5033_1 120 KKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYN 161
                 56678888888889***********************99986 PP

  == domain 2    score: 45.0 bits;  conditional E-value: 1.7e-14
   TIGR03269 151 elleevklehrithia....rdlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpe.viedlsdkaillekGeiveeGepeevvak 259
                 + +ee+    r+t++a    r lsGGek+rv +  +l  +p +ll dept  ld ++a  + ++l++ +++++ +++ + h p   + +  d+ i+l +G++v  G p + ++ 
  MMETSP1061-20121228|5033_1 222 DEVEEIIRLLRLTKVAeskiRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSsALFHSFDRLIMLAEGHVVYFGRPRDTLEY 335
                 3344444444555554333389*****************************************************9999999863688999*****************987764 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0     3e-18     2e-16     247     481 ..      93     323 ..      83     325 .. 0.75

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 3e-18
   TIGR02633 247 pkepheigdvilevenltaydvvnrkikr..vddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavl....kkfakksrideaaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselae..vlGlsdrvlvigeGkl 481
                 p+  ++ ++ + +   +++    +r++k+  +d vs     Geil + G  G+G+t l+++l G  p +  g v ++gk++   +  + + a+ia v +    d    +l+v  ++  +++    +k++ ++++de      +ee i+ l++ t   +  i  lsGG++++  +   ll++p+vl+ldept G+d  +   + k++++la++    i+ s   +   ++   dr++++ eG++
  MMETSP1061-20121228|5033_1  93 PQSKKDFRKFVWREFAVSTIGKSDRQKKKtiLDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYN-SGVVSVNGKPLGGPDM-KRLMAKIAYVKQ---ADIFFEHLTVRDQLGYTAMmrlpQKWTRQMKLDE------VEEIIRLLRL-TKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQPSsaLFHSFDRLIMLAEGHV 323
                 6666666666776667776666665555433699******************************98865.799********98765.567889999853...4555667777777766666111145555555554......4444444444.455667899***************************************************999998877664214455699999999976 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.7e-05    0.0025     333     381 ..     119     167 ..     107     174 .. 0.89
   2 !   42.1   0.1   1.3e-13   9.2e-12     135     207 ..     213     289 ..     175     304 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.7e-05
   TIGR03719 333 gdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381
                 ++k+++d +s    +g i+ ++Gp G+Gk+ l++ ++g++  +sG +++
  MMETSP1061-20121228|5033_1 119 KKKTILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSV 167
                 6789999999999********************************9987 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 1.3e-13
   TIGR03719 135 dawdldsklei...amdalrlpe.edakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey 207
                 + w+ + kl+     +  lrl + +++k+  lsGGek+rv +   ll++P++llldePt  ld+ s   l k+l++ 
  MMETSP1061-20121228|5033_1 213 QKWTRQMKLDEveeIIRLLRLTKvAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKL 289
                 5666666655500055567776536899**************************************99999998875 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.7   0.3   1.2e-16   8.5e-15      23     220 ..     130     327 ..     108     334 .. 0.72

  Alignments for each domain:
  == domain 1    score: 52.7 bits;  conditional E-value: 1.2e-16
   TIGR02323  23 flypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnpr...GlrmevsaGanigerllavgar..hyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivthlavarlla..qrllvmkqGrvvesG 220
                 +  pGe+l+++G sGsGk++ll++l++r   ++G v+ + +        l  ++ ++l+      v+q       l ++   G     rl    +r  +  ++ +  + l+  ++ ++  k + +sGG ++r++i  +l+t p ++++ ept Gl s  a  l  +l++l r+ + ++i   h     l+   +rl+++ +G+vv  G
  MMETSP1061-20121228|5033_1 130 YAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKP-------LGGPDMKRLMAK-IAYVKQADIffeHLTVRDQLGYTAMMRLPQKWTRqmKLDEVEEIIRLLRLTKVAES--KIRMLSGGEKKRVNIGTELLTDPEVLLLdEPTSGLDSTSAVALmkMLQKLARNSHKTIITSIHQPSSALFHsfDRLIMLAEGHVVYFG 327
                 578*********************************998877.......555555555543.56666655422223333333333334443333330034455555556666666554..5689********************99999******77766554469*****************777777643489*********9766 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   5.1e-17   3.5e-15      11     208 ..     133     327 ..     124     339 .. 0.82

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 5.1e-17
   TIGR02770  11 rgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgr..eialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithD.lgvvaeladevavmekGkiverg 208
                  g++la++G sGsGk+    ++l+ l+      sG + ++gk+l    ++    +ia++ q   + f   lt+++ql  t +++   + + + ++ e  e + L    +v ++   +lsGG  +Rv i   ll+++ +l+ DePt+ lD ++++ ++k+l++l +++  +i+   h   + + +  d ++++ +G++v  g
  MMETSP1061-20121228|5033_1 133 PGEILAMMGPSGSGKT----SLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLmaKIAYVKQ--ADIFFEHLTVRDQLGYTAMMRLPQKWTRQMKLDEVEEIIRLLRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITSIHQpSSALFHSFDRLIMLAEGHVVYFG 327
                 699************7....6788888888899***********99877665115666665..67899999******9999887655544444455555567888899*******************************************************99999999887776245677888888888888888655 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   9.6e-15   6.6e-13     353     551 ..     126     327 ..     111     338 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 9.6e-15
   TIGR01192 353 dvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnr.sirenirlgredatdeevveaakaaaasdfiekrlkg.ydtlvgerg.nrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiia..hrlst..vreadlvlfldqgrliekg 551
                  vs  a  g+ +a++gp+g+gkt+l+n l      +sg ++++g  +   + + l   ia v q   +++  ++r+++         ++     k     d +e+ ++   +t+v e     lsgge++r+ i   +l +  +l+lde ts ld  + + + + ++ l +n    ii+  h+ s+      d +++l +g ++  g
  MMETSP1061-20121228|5033_1 126 SVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVKQADIFFEHlTVRDQLGYTAMMRLPQKWTRQMKL----DEVEEIIRLlRLTKVAESKiRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTIITsiHQPSSalFHSFDRLIMLAEGHVVYFG 327
                 57888999**********************99999***************************9977777643888876554444444444444444....45555444314688888661569**************************************9****9999977666642366554224667888888888887665 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   8.3e-12   5.7e-10     478     648 ..     133     312 ..     117     323 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 8.3e-12
   TIGR00954 478 sGnhlLiiGPnGcGKsslfRilgelWPvyg...........glltkpeegklFyvPqrPYmslg.tlRdqiiYP..dssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAv....svdvEdklyelakevgitllsvshrksLwkyHey 648
                  G+ l ++GP G GK sl   l++  P  +           g  +k    k+ yv q   +    t+Rdq+ Y   ++  +  +r ++  ++e+i+  ++L+++ e ++          +LsgGek+R+++   +   P+  +LDE ts +    +v + + l +la++ + t+++  h++s   +H +
  MMETSP1061-20121228|5033_1 133 PGEILAMMGPSGSGKTSLLNCLSGRNPYNSgvvsvngkplgGPDMKRLMAKIAYVKQADIFFEHlTVRDQLGYTamMRLPQKWTRQMKLDEVEEIIRLLRLTKVAESKI---------RMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLdstsAVALMKMLQKLARNSHKTIITSIHQPSSALFHSF 312
                 5888999********************98888889988888777888889*******99887777********833455678889999999999999999999988664.........58**************************99865433368888999999****************9999976 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   7.6e-10   5.2e-08     441     630 ..     123     328 ..     118     346 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 7.6e-10
   TIGR01271 441 vlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpgt..ikd.niifg.ls.ydeyrytsvikacqleediallaekdktv.......lgeggi.tlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtskle....hlkkadkilllhegscyfygt 630
                 +l  +s +   g++la+ g +gsgk+sll  + g      g +   g+    p++  +m     +k+ +i+f  l+  d+  yt++++  q      +l e ++++       ++e  i  lsgg++ r+++   +  d ++ lld p s ld ++   +  + l kl  n  + ++ts  +     ++  d++++l eg+  ++g 
  MMETSP1061-20121228|5033_1 123 ILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIayVKQaDIFFEhLTvRDQLGYTAMMRLPQKWTRQMKLDEVEEIIrllrltkVAESKIrMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVAL-MKMLQKLARNSHKTIITSIHQpssaLFHSFDRLIMLAEGHVVYFGR 328
                 67888889999***********************999999*****************998642266615666434426999*****998887766666666665432222111677887459*******************************8877665.5789******99999999654222145678**********999884 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   6.9e-09   4.7e-07     365     548 ..     132     324 ..     115     327 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 6.9e-09
   TIGR01194 365 asGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsav.fadyylfddlvqpde.kkqasldqattylsrleled...kv...kvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrG.ktilvishd..dryfeladrlikladGkvv 548
                 a Ge++ ++G  G Gk++l+  l G    ++G + ++G+++            + v  ad  +f++l   d+ +  a +   +++ ++++l++    +   ++   + s    ls G++kr+ + +  l +  vlllde ++  d +   v   ++l  l r+  kti+   h+     f+  drli la+G vv
  MMETSP1061-20121228|5033_1 132 APGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGKPLGGPDMKRLMAKIAYVkQADI-FFEHLTVRDQlGYTAMMRLPQKWTRQMKLDEveeIIrllRLTKVAESKIRMLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTS-AVALMKMLQKLARNShKTIITSIHQpsSALFHSFDRLIMLAEGHVV 324
                 679************************99***********986543333333333314565.577776556525666666666666666554411044111445566788899*******************************9875.566778888998875399998888732578**************98 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.57        39     633     651 ..     134     152 ..     117     156 .. 0.75
   2 !   22.7   0.1   8.1e-08   5.5e-06     826     886 ..     241     298 ..     225     304 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.57
   TIGR00630 633 glltvitGvsgsGkstLin 651
                 g++ ++ G+sgsGk +L+n
  MMETSP1061-20121228|5033_1 134 GEILAMMGPSGSGKTSLLN 152
                 5566777888888888876 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 8.1e-08
   TIGR00630 826 attLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvv 886
                   +LsGGe +rv + +eL    t   + +lDePt GL       L+++lq+l+ + +  ++
  MMETSP1061-20121228|5033_1 241 IRMLSGGEKKRVNIGTELL---TDPEVLLLDEPTSGLDSTSAVALMKMLQKLARNSHKTII 298
                 468***************7...678899*************************99876665 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   4.2e-08   2.9e-06     653     849 ..     123     333 ..     108     441 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4.2e-08
   TIGR00957 653 tlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkg.............svayvpqq.awiqndslrenilfgkale.ekyykavleacalladleilpsgdrteigekgvn.lsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgis..ylpqvdviivlsdgkisemgsyqell 849
                  l++++     g ++a++g+ g gk+sll +l +      g v+++g              +ayv q   + +  ++r+++ +   ++ ++++    +   l    ei+     t++ e  +  lsgg+k+rv +   + +d ++ lld+p s +d+  a  ++ k++        kt i   h  s   +   d +i+l++g++  +g  ++ l
  MMETSP1061-20121228|5033_1 123 ILDSVSGYAAPGEILAMMGPSGSGKTSLLNCLSGRNPYNSGVVSVNGkplggpdmkrlmaKIAYVKQAdIFFEHLTVRDQLGYTAMMRlPQKWT---RQMKLDEVEEIIRLLRLTKVAESKIRmLSGGEKKRVNIGTELLTDPEVLLLDEPTSGLDSTSAVALM-KMLQKLARNSHKTIITSIHQPSsaLFHSFDRLIMLAEGHVVYFGRPRDTL 333
                 567777777789999****************999877777777666522222222222225777776413556667777766665544123333...3334445557777888899999888548********************************9988776.56677777888999988886542256789999******999888765554 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00043     0.029     123     145 ..     135     157 ..      91     170 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00043
   TIGR00157 123 risvfaGqSGVGKSSLiNlldpe 145
                 +i  ++G+SG GK SL+N l+++
  MMETSP1061-20121228|5033_1 135 EILAMMGPSGSGKTSLLNCLSGR 157
                 46689**************9976 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00064     0.044       1      24 [.     134     157 ..     134     168 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00064
   TIGR02322   1 grlilvvGpsGaGKDtlldlarar 24 
                 g++++++GpsG+GK +ll+ +  r
  MMETSP1061-20121228|5033_1 134 GEILAMMGPSGSGKTSLLNCLSGR 157
                 67899*************987655 PP

>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00065     0.045     401     450 ..     260     308 ..     224     319 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00065
   TIGR01069 401 densLvllDElgaGTDpdegsaLaislLeklakqnalvlitTHykelkal 450
                 +++  +llDE  +G D + + aL   +L+kla++  +++it  +++ +al
  MMETSP1061-20121228|5033_1 260 TDPEVLLLDEPTSGLDSTSAVALM-KMLQKLARNSHKTIITSIHQPSSAL 308
                 458899****************95.699*************999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       316  (0.0770356); expected 82.0 (0.02)
Passed bias filter:                      231  (0.056314); expected 82.0 (0.02)
Passed Vit filter:                        91  (0.0221843); expected 4.1 (0.001)
Passed Fwd filter:                        60  (0.014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              60  [number of targets reported over threshold]
# CPU time: 1.15u 0.20s 00:00:01.35 Elapsed: 00:00:00.87
# Mc/sec: 1193.97
//
Query:       MMETSP1061-20121228|5039_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1421.42
//
Query:       MMETSP1061-20121228|5041_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-35  117.7   2.4    5.2e-33  111.6   1.6    2.2  1  TIGR00059 L17: ribosomal protein L17


Domain annotation for each model (and alignments):
>> TIGR00059  L17: ribosomal protein L17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   1.6   1.3e-36   5.2e-33       2     112 .]       7     145 ..       6     145 .. 0.83

  Alignments for each domain:
  == domain 1    score: 111.6 bits;  conditional E-value: 1.3e-36
   TIGR00059   2 vrklgrtsahRkallrnlasallkhekiettkakakelrrvveklitlak.....vdnlaarrevkaylrnkel......................lkkLfseiapryeereGGYtRilklg.kRrgDaaemailelvd 112
                 +rkl+rtsah+  +lrn++s+l++he+i tt+akakelr+ ++++itlak     +++ ++  + +  + + e+                      ++kLf  ++pry+ reGGYtR+lkl  +R+gD+a+ma++e vd
  MMETSP1061-20121228|5041_1   7 FRKLNRTSAHKWSMLRNMVSSLIEHERIVTTEAKAKELRHLADQMITLAKkglpsEEQHNNNSNNSDGTTKPETktpgellhhrrrasrvvrgewnVTKLFDVLGPRYKFREGGYTRVLKLArPRAGDNAPMAVIEYVD 145
                 69************************************************7776622233333333333322226777888888888888888888************************9637*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1071.14
//
Query:       MMETSP1061-20121228|5037_1  [L=890]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 3356.29
//
Query:       MMETSP1061-20121228|5040_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-24   84.3   2.3    1.1e-22   78.3   0.0    2.9  3  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    4.2e-21   73.2   0.7    4.4e-20   69.9   0.0    2.7  3  TIGR00231 small_GTP: small GTP-binding protein domain
    7.1e-10   36.1   0.9      2e-06   24.8   0.0    3.1  3  TIGR03156 GTP_HflX: GTP-binding protein HflX
      1e-08   32.5   1.5    6.6e-06   23.3   1.0    2.6  1  TIGR00092 TIGR00092: GTP-binding protein YchF
    2.6e-07   27.9   0.0    2.6e-07   27.9   0.0    2.5  3  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    3.3e-07   27.5   0.0    3.3e-07   27.5   0.0    2.0  3  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      2e-06   25.2   1.2    3.6e-06   24.4   0.0    2.0  2  TIGR00436 era: GTP-binding protein Era
      3e-06   24.0   0.0      3e-06   24.0   0.0    1.7  3  TIGR00437 feoB: ferrous iron transport protein B
    0.00028   18.2   0.0    0.00028   18.2   0.0    2.9  4  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    0.00045   17.0   0.2     0.0016   15.2   0.0    1.9  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF


Domain annotation for each model (and alignments):
>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.3    0.0064       2.6      20      45 ..      81     106 ..      77     111 .. 0.87
   2 !   78.3   0.0   2.8e-25   1.1e-22     158     285 ..     110     233 ..     109     264 .. 0.93
   3 ?   -2.1   0.0      0.79   3.2e+02     273     297 ..     291     315 ..     255     332 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0064
   TIGR02729  20 sfrrekyvpkGGPdGGdGGkGGsvil 45 
                  +r e +v++ G +GG+ G+G +v  
  MMETSP1061-20121228|5040_1  81 RLRNELFVEQSGGSGGSSGEGFDVAR 106
                 5799*****************99975 PP

  == domain 2    score: 78.3 bits;  conditional E-value: 2.8e-25
   TIGR02729 158 advglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvveveeeksfvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidl 285
                 a v+l+G+p++GkStll a++a++++ a+Y+FtTl+   Gv++++  +++ + D+Pg+iega++gag G+e +    ++  +l ++d+ +e      ++ e++ekeL++   +L+++p  v ++k  +
  MMETSP1061-20121228|5040_1 110 ARVALIGFPSVGKSTLLGALTATESEAAAYEFTTLTCIPGVMRYKG-SKVQVLDLPGIIEGAAHGAGRGKEVIAVARNADAILIVLDAGKE---GLNRHREILEKELETVGIRLNQRPPDVTISKRKM 233
                 679******************************************9.99999************************************998...7889999*****************9999998766 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.79
   TIGR02729 273 ekpelvvlnkidlleeeeleellke 297
                  kp l + nkid+++ ee+++l+++
  MMETSP1061-20121228|5040_1 291 YKPALYLYNKIDTITIEEVDQLARQ 315
                 4778888899999888888777655 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   0.0   1.1e-22   4.4e-20       3     126 ..     109     228 ..     107     249 .. 0.92
   2 ?   -1.0   0.0      0.68   2.8e+02      81     127 ..     260     308 ..     254     320 .. 0.66
   3 ?   -0.8   0.1      0.59   2.4e+02      78     148 ..     386     454 ..     373     462 .. 0.59

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 1.1e-22
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldv.eeglekqtkeiiheakkkgvpiilvvnKiDlkd 126
                 +++++++G+++vGKstLl  l+ ++ s+ ++++++t + ++ +++++G   kv++lD++G ++ +a    + +ev ++++ +d +++vld+ +egl+++++++++e++   v+i+l+  ++D   
  MMETSP1061-20121228|5040_1 109 DARVALIGFPSVGKSTLLGALTATE-SEAAAYEFTTLTCIPGVMRYKG--SKVQVLDLPGIIEGAAHGAGRGKEVIAVARNADAILIVLDAgKEGLNRHREILEKELE--TVGIRLNQRPPDVTI 228
                 6799*********************.**********************..77*************************************99678999***********..9***99999988765 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.68
   TIGR00231  81 levvdivil.vldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..d 127
                 l+++ i+++ vl+ ee+  +q   ++  ++ + +p +   nKiD+ +  +
  MMETSP1061-20121228|5040_1 260 LREYKIISAdVLAREEITVDQLVDVALGNR-EYKPALYLYNKIDTITieE 308
                 555555544366666777777777777777.7788888999999988431 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.59
   TIGR00231  78 erslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklnaep.iiels 148
                 +++l++++ ++     + +  +q+  ++h ++ ++v+ i+  +   +++  ++++++l+++ + +    +l+
  MMETSP1061-20121228|5040_1 386 TQMLRDFNYALV-WGSSAVHAPQRCGLTHKLDDEDVVQIVTKTIKQQQN--SSSYAQLAQEYQDKHaKKRLE 454
                 566666666665.666666668888888888877776666544333333..455555555544444334444 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.12        50      99     148 ..      52     101 ..      43     104 .. 0.70
   2 !   24.8   0.0   4.9e-09     2e-06     187     300 ..     107     218 ..     103     228 .. 0.89
   3 !    7.3   0.0     0.001      0.43     300     341 ..     290     330 ..     264     341 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.12
   TIGR03156  99 iLdIFaqrArtkegkl.qVelAqlkyllprlvrkgthlsrqkgGiGtrGpG 148
                 i +I a+ Art++ k    +l  lk +l+rl + +  +++ +g+ G  G G
  MMETSP1061-20121228|5040_1  52 IKEIEAEMARTQKNKAtNYHLGTLKAKLARLRN-ELFVEQSGGSGGSSGEG 101
                 668888899998887525788888888888854.34455555555577877 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 4.9e-09
   TIGR03156 187 sevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeeevlltDTVGFirkLPheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgae 300
                 +   +val+G+   GKstll alt++e  a+   F+TL      ++++ +++v + D  G i+   h      k  +  +++ad +l v+Da +e  +++ e  e+ Le +g++
  MMETSP1061-20121228|5040_1 107 NGDARVALIGFPSVGKSTLLGALTATESEAAAYEFTTLTCIPGVMRYK-GSKVQVLDLPGIIEGAAHGAG-RGKEVIAVARNADAILIVLDAGKEGLNRHREILEKELETVGIR 218
                 55679*********************************8887777775.5589999********999865.55999***************************99999998875 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.001
   TIGR03156 300 eeipvllvlNkidkleeeeleeleekkeeavlvsAkkgegle 341
                 e +p l+++Nkid+++ ee+++l+++ +++++ s +k++++ 
  MMETSP1061-20121228|5040_1 290 EYKPALYLYNKIDTITIEEVDQLARQ-PHSIVGSVNKKWNIG 330
                 44699****************99998.789999999988875 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   1.0   1.6e-08   6.6e-06       6     104 ..     113     193 ..     109     199 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.6e-08
   TIGR00092   6 GivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpderldkLaeivksekvvpttlefvDiaGLvkGaskGeGLGnkfLaniRevdaivhv 104
                  ++G p vGkstl  a+t+++  eaa y f+t+    gv+                     ++++++D+ G+++Ga++G G G + +a  R+ dai+ v
  MMETSP1061-20121228|5040_1 113 ALIGFPSVGKSTLLGALTATES-EAAAYEFTTLTCIPGVMR-----------------YKGSKVQVLDLPGIIEGAAHGAGRGKEVIAVARNADAILIV 193
                 689*****************99.*********987666543.................334567899****************************9877 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   6.4e-10   2.6e-07     209     301 ..     109     199 ..      97     214 .. 0.81
   2 ?    1.9   0.0      0.05        20     309     351 ..     284     326 ..     257     347 .. 0.72
   3 ?   -3.9   0.7       2.8   1.1e+03     352     396 ..     417     454 ..     409     463 .. 0.43

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 6.4e-10
   TIGR00450 209 glklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskp 301
                   ++a++G + vGKS Ll al  ++    ++++ tt  ++ +++  +G +v++lD  Gi e a +    G +     +++ad +l vlDa k+
  MMETSP1061-20121228|5040_1 109 DARVALIGFPSVGKSTLLGALTATES-EAAAYEFTTLTCIPGVMRYKGSKVQVLDLPGIIEGAAHGAGRG-KEVIAVARNADAILIVLDAGKE 199
                 4689*****************99885.5689****************************99887654444.33456779**********9765 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.05
   TIGR00450 309 iitlkkkkkdlllvlNKiDLaeleilkselkltvsllsakqlk 351
                 ++  +++ k+ l ++NKiD ++ e+  +    + s +   ++k
  MMETSP1061-20121228|5040_1 284 VALGNREYKPALYLYNKIDTITIEEVDQLARQPHSIVGSVNKK 326
                 45569999************98888877666766666555554 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 2.8
   TIGR00450 352 ikelvdlltekinalyskekdeldlalisssealillekaiaele 396
                  +++v+++t+ i++  ++ +     +l ++ +     ++a+++le
  MMETSP1061-20121228|5040_1 417 DEDVVQIVTKTIKQQQNSSS---YAQLAQEYQD----KHAKKRLE 454
                 44445555555544444322...2223333222....33444444 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   8.1e-10   3.3e-07       2     101 ..     111     208 ..     110     217 .. 0.80
   2 ?   -2.0   0.0      0.71   2.9e+02     283     305 ..     288     309 ..     253     321 .. 0.63
   3 ?   -3.9   0.7       2.6   1.1e+03     337     381 ..     419     463 ..     412     464 .. 0.64

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 8.1e-10
   TIGR03594   2 vvaivGrpNVGKStLfNrlvkkr.kAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeia 101
                  va++G p VGKStL+  l+ +  +A   ++  +T     g +++kg +++++D +G+ e +++ + +  +++ +  ++ad+il v+da ++  ++++ei 
  MMETSP1061-20121228|5040_1 111 RVALIGFPSVGKSTLLGALTATEsEAAAYEFTTLT--CIPGVMRYKGSKVQVLDLPGIIEGAAHGAGR-GKEVIAVARNADAILIVLDAGKEGLNRHREIL 208
                 69*****************9875367766666666..799******************6666665555.5566677799*********9887777777665 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.71
   TIGR03594 283 leegkalvivvNKwDlvkdekel 305
                  +e k+ + + NK+D + + +e 
  MMETSP1061-20121228|5040_1 288 NREYKPALYLYNKIDTI-TIEEV 309
                 45556666666666666.44444 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 2.6
   TIGR03594 337 klleaikevyeslskristsklnrvleeavekhppplvkgkrlkl 381
                 ++++ ++++ ++ ++  s ++l +  ++  +k++  ++k+k+ kl
  MMETSP1061-20121228|5040_1 419 DVVQIVTKTIKQQQNSSSYAQLAQEYQDKHAKKRLEAKKHKQKKL 463
                 556666666666666666677766666666666666666666665 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   8.8e-09   3.6e-06       2      92 ..     111     199 ..     110     229 .. 0.81
   2 ?   -2.9   0.9       1.8   7.2e+02     100     133 ..     428     461 ..     415     464 .. 0.69

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 8.8e-09
   TIGR00436   2 fvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhek.khklnellvkeirkalsevdlilfvvdsdek 92 
                 +va++G p+vGKSTLl  l+  ++        TT+  i g++  + s++  +D PG+ e   h  ++   ke+    ++ d il v+d+ ++
  MMETSP1061-20121228|5040_1 111 RVALIGFPSVGKSTLLGALTATESE-AAAYEFTTLTCIPGVMRYKGSKVQVLDLPGIIEGaAHGAGR--GKEVIAVARNADAILIVLDAGKE 199
                 79*****************998876.567899*************************8875666665..68888888888999988887654 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.8
   TIGR00436 100 leklqklkapvvlalnkldnkekdkllelidkea 133
                 +++ q+++ +  la   +d++ k++l+ + +k++
  MMETSP1061-20121228|5040_1 428 IKQQQNSSSYAQLAQEYQDKHAKKRLEAKKHKQK 461
                 4566778888888888888887777666666665 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.1       1.2   4.8e+02     156     187 ..      39      70 ..      13      87 .. 0.45
   2 !   24.0   0.0   7.4e-09     3e-06       1      82 [.     116     196 ..     116     208 .. 0.79
   3 ?   -4.5   0.4       3.1   1.3e+03     157     170 ..     429     442 ..     406     462 .. 0.35

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.2
   TIGR00437 156 iklvekkkraieilkeaeslaevkeklkelkq 187
                  ++ ++k+ ++e +ke e   + ++k k +++
  MMETSP1061-20121228|5040_1  39 DTTRHDKMGVMEKIKEIEAEMARTQKNKATNY 70 
                 33333333333333333333333333333333 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 7.4e-09
   TIGR00437   1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkgedieivDlPGiYsLttvsldEkvardyllnekadLvvnvvda 82 
                 G p vGKstl+ aLt ++ + + +  +T     g + +kg ++++ DlPGi +  +     + ++   +  +ad ++ v+da
  MMETSP1061-20121228|5040_1 116 GFPSVGKSTLLGALTATESEAAAYEFTTLTCIPGVMRYKGSKVQVLDLPGIIEGAAHGA-GRGKEVIAVARNADAILIVLDA 196
                 6799**********************************************976555543.2222222334455666666665 PP

  == domain 3    score: -4.5 bits;  conditional E-value: 3.1
   TIGR00437 157 klvekkkraieilk 170
                 k++++++   ++ +
  MMETSP1061-20121228|5040_1 429 KQQQNSSSYAQLAQ 442
                 11111111111111 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       1.7   6.8e+02      71     113 ..      25      67 ..      10      85 .. 0.60
   2 !   18.2   0.0   6.8e-07   0.00028     116     175 ..     107     168 ..      96     212 .. 0.83
   3 ?   -1.5   0.0       0.7   2.9e+02      47      69 ..     290     312 ..     287     318 .. 0.84
   4 ?   -1.9   0.7      0.88   3.6e+02      85     234 ..     428     451 ..     410     464 .. 0.31

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.7
   TIGR03596  71 kyfeekgkkalavnakkkkkvkkilkaikkllkekkeklkakg 113
                 ++f +++k++   n +++++   ++++ik++ +e  +++k+k 
  MMETSP1061-20121228|5040_1  25 NHFVREKKDIEPPNDTTRHDKMGVMEKIKEIEAEMARTQKNKA 67 
                 4455444455555555555555566666666555555555544 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 6.8e-07
   TIGR03596 116 kkairalvvGiPNvGKStliNrlakkkvakvg.nkpgvTksqqwikls.keleLlDtPGilw 175
                 +   r+  +G+P vGKStl+  l+  ++  ++ +   +T     ++++ +++++lD PGi+ 
  MMETSP1061-20121228|5040_1 107 NGDARVALIGFPSVGKSTLLGALTATESEAAAyEFTTLTCIPGVMRYKgSKVQVLDLPGIIE 168
                 56789******************88776555515578888888888762589*******985 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.7
   TIGR03596  47 knkprlivlnkaDladpektkkw 69 
                 + kp l++ nk D +  e+++++
  MMETSP1061-20121228|5040_1 290 EYKPALYLYNKIDTITIEEVDQL 312
                 569***********999888776 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 0.88
   TIGR03596  85 akkkkkvkkilkaikkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklskeleLlDtPGilwpkledeevglkLaltgaikdeildkeevalfllellkekypeelkerykleeeeeeeee 234
                  k++++ ++ ++++++                                                                                                                                ++++++
  MMETSP1061-20121228|5040_1 428 IKQQQNSSSYAQLAQEYQ------------------------------------------------------------------------------------------------------------------------------DKHAKK 451
                 122222222222222222..............................................................................................................................111111 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.9e-06    0.0016       8     110 ..     110     210 ..     104     221 .. 0.86
   2 ?   -2.3   0.0       0.8   3.3e+02     113     156 ..     289     329 ..     257     342 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.9e-06
   TIGR03918   8 lhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeellee 110
                  ++al+G   +GKS+l+ alt ++    + ++ tT   +   m  +    v ++D +G+ + ++ G+ R +   +v +++d +l+v+da +e  +  +e+le+
  MMETSP1061-20121228|5040_1 110 ARVALIGFPSVGKSTLLGALTATESE-AAAYEFTTLTCIPGVMRYKG-SKVQVLDLPGIIEGAAHGAGRGKEVIAVARNADAILIVLDAGKEGLNRHREILEK 210
                 5799*****************99865.56778888889999998665.689**************************************98888887777765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.8
   TIGR03918 113 ekkipvivvlnkidlkeeekekeklekkkeeevvlvsakekegi 156
                 ++  p ++++nkid+ + e   e ++ +++ + ++ s+++k++i
  MMETSP1061-20121228|5040_1 289 REYKPALYLYNKIDTITIE---EVDQLARQPHSIVGSVNKKWNI 329
                 4556899999999998875...3444444455555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 1805.15
//
Query:       MMETSP1061-20121228|5044_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.2   0.7       0.03   10.6   0.5    1.1  1  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.5   7.4e-06      0.03     468     523 ..     504     559 ..     491     562 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.4e-06
   TIGR02348 468 kekkdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavvadk 523
                 +++k+++    aat+ey+ l++a ++d a   +    n++s+a+   ++ avv++ 
  MMETSP1061-20121228|5044_1 504 NNNKNKNNNNSAATKEYVHLIQASVVDGATWNKILCANSSSLAAAAAAAAAVVTKE 559
                 55667788889*********************************999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 2549.28
//
Query:       MMETSP1061-20121228|5043_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-65  217.8   0.0    4.8e-65  217.5   0.0    1.1  1  TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase
    7.9e-39  131.3   0.0    9.9e-39  130.9   0.0    1.1  1  TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase
    2.7e-12   44.5   0.0    6.1e-12   43.3   0.0    1.6  1  TIGR01467 cobI_cbiL: precorrin-2 C20-methyltransferase
      4e-10   37.5   0.0    3.5e-07   27.9   0.0    2.1  2  TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase
    7.8e-06   23.3   0.0    1.3e-05   22.5   0.0    1.4  1  TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
    3.4e-05   21.4   0.2     0.0013   16.2   0.0    2.4  3  TIGR02434 CobF: precorrin-6A synthase (deacetylating)


Domain annotation for each model (and alignments):
>> TIGR01469  cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.5   0.0     7e-68   4.8e-65       1     236 [.      86     318 ..      86     320 .. 0.93

  Alignments for each domain:
  == domain 1    score: 217.5 bits;  conditional E-value: 7e-68
   TIGR01469   1 gkvylvGaGPGdpellTlkalrllqeadv.vlyDalvseeilalvkeeaelikvGKragkhsvkQeeinellvelakkgkkVvRLKgGDplvfGRggeElealeeagiefevvpGvtsavaaaaaagiPlThrglassvtfvtgheaedekkevdwealakkeetlviymgvkklaeiakelie.agrsedtpvavvenatlekqrvligtlgelaekvaeeklksPaliviGevval 236
                 g+v+lvG+GPGdp+llT+ka++llq+ d+ v+ D+lvs+eil+lv+   e+    K +g+ + +Q+ei     +   +gk+V+RLK GDp+vfGRggeE+   ++ g+e +vvpGv++a++a+  a+iP+Thrg +++v+++tg  +e++ ++ d  +  ++ +t+v++m v +l+ ++++li+ ag ++dtpv ++e+a +++qr++ig+++++a+ ++++++++P+ iv+G+vv++
  MMETSP1061-20121228|5043_1  86 GRVTLVGSGPGDPDLLTMKAYKLLQDPDAiVIADRLVSQEILDLVQ--GEIKVARKLPGCAEYAQAEIYWWTYQGLAAGKHVIRLKIGDPFVFGRGGEEVLQFRKFGVESKVVPGVSAAFSAPLLANIPVTHRGSSNQVVMCTGYGREGS-SP-DLIQYHEE-QTIVFLMAVGRLRVLCERLITmAGYPKDTPVGIIERAGCPNQRTVIGDMQTIADIAEKHNIQAPSTIVVGKVVNV 318
                 79*************************962578************7..45556679****************************************************************************************999996.33.56666654.6******************97479************************************************986 PP

>> TIGR01465  cobM_cbiF: precorrin-4 C11-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.9   0.0   1.4e-41   9.9e-39       1     229 [.      88     318 ..      88     331 .. 0.90

  Alignments for each domain:
  == domain 1    score: 130.9 bits;  conditional E-value: 1.4e-41
   TIGR01465   1 vvfvGaGPGdpdLitvkgrkllesadvvlyAgsLvneellalarkeaevvd....saalsleeivdllvkaaeegklvvRlhsGDpsiygalaeqlqalealgidyevvPGvsslaaaaaaleaeltlpevsqtviltRaegrtpvpekeklaklakhgatlaiflsvklvdkvvkell.egGysedtPvavvyratWpdekivrgtlkdlaekvreeklkkttlilvgealde 229
                 v++vG+GPGdpdL+t+k+ kll++ d ++ A+ Lv++e+l+l++ e +v+      a+ +  ei  +  +  ++gk v+Rl+ GDp ++g   e++ ++++ g++ +vvPGvs++++a   +++ +t  + s  v++    gr    +  +l +  + + t++  ++v +++ + + l+ ++Gy++dtPv ++ ra+ p+++ v g ++++a+  ++++++  + i+vg++++ 
  MMETSP1061-20121228|5043_1  88 VTLVGSGPGDPDLLTMKAYKLLQDPDAIVIADRLVSQEILDLVQGEIKVARklpgCAEYAQAEIYWWTYQGLAAGKHVIRLKIGDPFVFGRGGEEVLQFRKFGVESKVVPGVSAAFSAPLLANIPVTHRGSSNQVVMCTGYGREG--SSPDLIQYHE-EQTIVFLMAVGRLRVLCERLItMAGYPKDTPVGIIERAGCPNQRTVIGDMQTIADIAEKHNIQAPSTIVVGKVVNV 318
                 789***************************************99998887633336999999**********************************************************************9999999999764..3344555544.457777889999999999998358************************************************9987 PP

>> TIGR01467  cobI_cbiL: precorrin-2 C20-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   8.9e-15   6.1e-12       1     210 [.      86     289 ..      86     300 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 8.9e-15
   TIGR01467   1 gkligvGvGPGdpelitvkaleaLrsadviavPakkkgeeslAekivedllkeedkkilelefpmtkdreelekaweeaaeavaaeleegkdVafitlGDpslYSTFsyllqrlkepgievevvpGitslaaiasalglpLvegdeslailpat.agee....elekaleefdtvvlmKvgrnlpkvkellakagrlda..avlvervtleeekivd 210
                 g+++ vG GPGdp+l+t+ka + L++ d i++     ++e      + dl++   +  ++ + p  ++ ++ e +w        + l++gk+V  + +GDp++++       + ++ g+e +vvpG+++ + +   +++p+++   s  ++ +t +g e    +l ++ ee+ +v lm vgr      +l   ag  ++  + ++er+++++++ v 
  MMETSP1061-20121228|5043_1  86 GRVTLVGSGPGDPDLLTMKAYKLLQDPDAIVIADRLVSQE------ILDLVQ--GEIKVARKLPGCAEYAQAEIYWWT-----YQGLAAGKHVIRLKIGDPFVFGRGGEEVLQFRKFGVESKVVPGVSAAFSAPLLANIPVTHRGSSNQVVMCTgYGREgsspDLIQYHEEQTIVFLMAVGRLRVLCERLITMAGYPKDtpVGIIERAGCPNQRTVI 289
                 57889**************************998885555......556666..456688999999999999999998.....77999*****************998877788889*************************988887777776223222222788888888888888888766666666666555444114567888888777665 PP

>> TIGR01466  cobJ_cbiH: precorrin-3B C17-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   5.1e-10   3.5e-07       2     116 ..      89     207 ..      88     217 .. 0.82
   2 !    7.6   0.0    0.0008      0.54     179     224 ..     267     316 ..     253     330 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5.1e-10
   TIGR01466   2 yvvgiGpGaeelitpeakealeeadvivgYktYl.klvedlledk..evvksdmkeEleRaee...AlekakegkeValvssGDpgiyglaalvlellekkkaevdievvPGitaasaaaa 116
                 ++vg GpG+ +l+t++a + l++ d iv  ++ + + + dl++++    +k + + E + ae      +  ++gk+V  +  GDp ++g  +   e+l+ +k  v+ +vvPG++aa +a  
  MMETSP1061-20121228|5043_1  89 TLVGSGPGDPDLLTMKAYKLLQDPDAIVIADRLVsQEILDLVQGEikVARKLPGCAEYAQAEIywwTYQGLAAGKHVIRLKIGDPFVFGRGGE--EVLQFRKFGVESKVVPGVSAAFSAPL 207
                 78***********************99887776625688888886625578899*******973334566789****************9986..788888888899********988765 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0008
   TIGR01466 179 lrkadtpvgivrnagrekeeveittlkel...deek.idmltvviiGnse 224
                    +dtpvgi+  ag ++++ +i +++ +   +e++ i+  +++++G   
  MMETSP1061-20121228|5043_1 267 GYPKDTPVGIIERAGCPNQRTVIGDMQTIadiAEKHnIQAPSTIVVGKVV 316
                 45679***************998666554111444359999*****9865 PP

>> TIGR02467  CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0     2e-08   1.3e-05       1     192 [.      90     296 ..      90     306 .. 0.65

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2e-08
   TIGR02467   1 vvGvgpggaelLtaaaieaikkadlvvGseRh.....lellaelikekreiiktlk.dlkelleeiaatr.kekrvvvLasGDPlfygig..allaeklgkeeleiiPgiSSiqlafarlglpw......qdavliSlHGReleelllallrkarkvavltdpengpdeiareLie.nglseeteltVgenLgyedEritegsleeia 192
                 +vG gpg+++lLt +a +++++ d +v ++R      l+l++  ik  r++   ++  ++e+  +  +   ++k v+ L  GDP+++g g  ++l+ +  + e +++Pg+S+   a    ++p       +++v+ +  GRe +   l + ++++ +++l       + ++++Li   g+ ++t + ++e+ g ++ r + g+++ ia
  MMETSP1061-20121228|5043_1  90 LVGSGPGDPDLLTMKAYKLLQDPDAIVIADRLvsqeiLDLVQGEIKVARKLPGCAEyAQAEIYWWTYQGLaAGKHVIRLKIGDPFVFGRGgeEVLQFRKFGVESKVVPGVSAAFSAPLLANIPVthrgssNQVVMCTGYGREGSSPDLIQYHEEQTIVFLMA-VGRLRVLCERLITmAGYPKDTPVGIIERAGCPNQRTVIGDMQTIA 296
                 59**********************999888862211134455555555554433321345555555555559***************98633678888888899*******998887777777622222234667777777666655555555555555444.356666666666424666666666666666666666666666665 PP

>> TIGR02434  CobF: precorrin-6A synthase (deacetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.9e-06    0.0013       3      39 ..      88     124 ..      86     151 .. 0.81
   2 ?   -2.4   0.0      0.91   6.2e+02     199     211 ..     147     159 ..     137     170 .. 0.83
   3 ?    3.0   0.0      0.02        14     124     165 ..     181     222 ..     147     250 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.9e-06
   TIGR02434   3 llliGiGaGdPeyltlqavealraadvlfvldkgeek 39 
                 ++l+G G+GdP+ lt++a + l++ d++++ d+  ++
  MMETSP1061-20121228|5043_1  88 VTLVGSGPGDPDLLTMKAYKLLQDPDAIVIADRLVSQ 124
                 789***************************9985443 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.91
   TIGR02434 199 eeleiyWgaylGt 211
                  ++eiyW  y G 
  MMETSP1061-20121228|5043_1 147 AQAEIYWWTYQGL 159
                 57899**999886 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.02
   TIGR02434 124 eklkekgelaleleviPGitsvqaLaarhriplnrigepvei 165
                 e++ + +++ +e +v+PG+++  +     +ip+ + g + ++
  MMETSP1061-20121228|5043_1 181 EEVLQFRKFGVESKVVPGVSAAFSAPLLANIPVTHRGSSNQV 222
                 5666677889999*******9887666667777766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1666.97
//
Query:       MMETSP1061-20121228|5046_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-45  150.6   0.0    1.2e-35  120.7   0.0    2.7  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    3.4e-28   96.6   0.0    6.7e-24   82.5   0.0    2.5  2  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
  ------ inclusion threshold ------
      0.014   12.3   0.0      0.022   11.6   0.0    1.3  1  TIGR00536 hemK_fam: methyltransferase, HemK family
      0.016   12.5   0.1      0.032   11.5   0.1    1.5  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
      0.028   10.7   0.9      0.041   10.2   0.6    1.3  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0     1e-09   8.2e-07       3      37 ..      63      97 ..      61     107 .. 0.90
   2 !  120.7   0.0   1.5e-38   1.2e-35      36     200 ..     124     315 ..     110     318 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1e-09
   TIGR01934  3 evFdeiakkYDllNdllSlGldrlWkkkavkkiee 37
                ++Fd+ia++YD++N++l l +d  W++k+ ++i+e
  MMETSP1061-20121228|5046_1 63 SMFDSIATRYDTINRVLALRMDIGWRRKMTTRIKE 97
                6***************************9998876 PP

  == domain 2    score: 120.7 bits;  conditional E-value: 1.5e-38
   TIGR01934  36 eeekeekvlDvatGtGdlaielakkae.......akvtgvDlseemLevakkkakek.eeanvefieadaeeLp..f....ed........nsfdavtiafGlRNvt.diekaLkelaRVlkpggrlvilefskpkn...allkklyklYlknvlpsvgkllsk.nkeaYeYLaeSiekfpskeelaallke 200
                 +++++ ++lDvatGt+d+a++l              v+g+D+s++mL+v++ k+++k  +++++  +ada +L+  +    +d        + fda+tiafG+RNv+ +++kaL e++R l pgg l+ilefs+p+     +l ++ ++++++v+p+vg+lls+  +++Ye+L++Si+ fp  +e++++l++
  MMETSP1061-20121228|5046_1 124 QQKSSWRILDVATGTADVALQLIDDLSgddtdhaVTVLGLDPSANMLAVGRSKIHDKgLDSRIRLEQADARDLSryYqssdDDnnnnnnnaHAFDAATIAFGIRNVVpNRSKALCEIHRLLAPGGVLAILEFSQPTYeehGILGAAAAVFISKVVPVVGGLLSGgARKEYEHLQNSIKGFPGPAEFRQQLQD 315
                 3447789***************9988888999998999********************99*************86423332112222222236************853899***********************98644468999*****************973679*******************99876 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0     5e-05     0.041      10      41 ..      64      95 ..      61     105 .. 0.87
   2 !   82.5   0.0   8.2e-27   6.7e-24      43     208 ..     125     315 ..     108     325 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5e-05
   TIGR02752 10 vfekiykkydrmnsvisfkrhkkwrkdtmkrm 41
                +f++i ++yd++n v++++    wr+++  r+
  MMETSP1061-20121228|5046_1 64 MFDSIATRYDTINRVLALRMDIGWRRKMTTRI 95
                79***********************9876554 PP

  == domain 2    score: 82.5 bits;  conditional E-value: 8.2e-27
   TIGR02752  43 vqkgkkaldvccgtadwaialaeav.g....kegevkgldfsenmlsvgkekvkdakle.nvelvhgnamelp..y....edn........sfdyvtigfglrnv.pdylqvlkemarvvkpggkvvcletsqptllgfk...qlyflyfkyimpllgkllak.sykeyswlqesarefpgkdelaelfke 208
                  +   ++ldv  gtad a++l +++ g    +   v gld s nml+vg+ k++d+ l+ +++l   +a +l   y    +dn        +fd  ti fg+rnv p+  + l e++r++ pgg ++ le sqpt   +     +  +++  ++p++g ll+  + key  lq+s + fpg +e+++ +++
  MMETSP1061-20121228|5046_1 125 QKSSWRILDVATGTADVALQLIDDLsGddtdHAVTVLGLDPSANMLAVGRSKIHDKGLDsRIRLEQADARDLSryYqssdDDNnnnnnnahAFDAATIAFGIRNVvPNRSKALCEIHRLLAPGGVLAILEFSQPTYEEHGilgAAAAVFISKVVPVVGGLLSGgARKEYEHLQNSIKGFPGPAEFRQQLQD 315
                 4556689*************98765231111345799********************96379*******99964334433222233334446************549****************************98664111556788999******999752789***************999988776 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.7e-05     0.022     111     173 ..     124     192 ..      88     197 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.7e-05
   TIGR00536 111 sqeplkhilDlgtGsGcIalalAleip......naeviavDistdalavaeeNaeklkleerveliqsn 173
                 +q+   +ilD+ tG+  +al l   +        ++v + D s + lav ++ ++  +l  r++l q +
  MMETSP1061-20121228|5046_1 124 QQKSSWRILDVATGTADVALQLIDDLSgddtdhAVTVLGLDPSANMLAVGRSKIHDKGLDSRIRLEQAD 192
                 444558****************99999999988999****************************99976 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   3.9e-05     0.032      85     148 ..     124     194 ..      97     208 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.9e-05
   TIGR03534  85 kkkeklkvlDlgtGsGaIalalakel......pdakviavDiseeAlkvarkNakrlglke.veflksdll 148
                 ++k++ ++lD+ tG+  +al l   l        ++v++ D s++ l+v r+ ++  gl++ +++ ++d  
  MMETSP1061-20121228|5046_1 124 QQKSSWRILDVATGTADVALQLIDDLsgddtdHAVTVLGLDPSANMLAVGRSKIHDKGLDSrIRLEQADAR 194
                 556689*******************9999999999***********************9999999999975 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.6     5e-05     0.041     228     376 ..      88     237 ..      66     251 .. 0.55

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5e-05
   TIGR04074 228 rrslveealerLaeeeeaeeeeeeeeeeeeeekekkvslaeqRleavvaalresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqrervellqss...ltYrDkrlkgfdaavlveviehldeerlkal 376
                 rr+++++  e L+e+e+++e+e+e+e+e+e+e+++ ++ ++ R+  v     ++  + + Dl   ++    ++l  +   ++++v  s  + +   +r++l+++  +  +r   +qss      +++  + fdaa++   i  + ++r kal
  MMETSP1061-20121228|5046_1  88 RRKMTTRIKELLIEQEQEQEQEQEQEQEQEQEQARGQQKSSWRILDVATGTADVALQLIDDLSGDDTDHAVTVLGLDPSANMLAVGRSKIHDKGLDSRIRLEQADARDLSR--YYQSSdddNNNNNNNAHAFDAATIAFGIRNVVPNRSKAL 237
                 566666666666666666666666556666666666666666666666666666666666665544444433333333344444444444444444444444444443333..233331112334455666777777777776666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       313  (0.0763042); expected 82.0 (0.02)
Passed bias filter:                      210  (0.0511945); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1506.23
//
Query:       MMETSP1061-20121228|5045_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2249.09
//
Query:       MMETSP1061-20121228|5047_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       956  (0.233057); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.16s 00:00:00.86 Elapsed: 00:00:00.56
# Mc/sec: 1565.01
//
Query:       MMETSP1061-20121228|5049_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 619.62
//
Query:       MMETSP1061-20121228|5048_1  [L=1138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-47  160.1   0.1    2.6e-21   73.7   0.0    3.5  3  TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1)
    4.8e-16   56.7   0.0    2.9e-07   27.8   0.0    3.5  4  TIGR02779 NHEJ_ligase_lig: DNA polymerase LigD, ligase domain
    2.7e-10   37.6   0.0    5.1e-05   20.1   0.0    2.7  3  TIGR02776 NHEJ_ligase_prk: DNA ligase D
    1.8e-06   25.0   0.0    0.00034   17.5   0.0    2.8  3  TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family


Domain annotation for each model (and alignments):
>> TIGR00574  dnl1: DNA ligase I, ATP-dependent (dnl1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.4   0.0   1.3e-23   1.3e-20      78     267 ..      79     303 ..      38     318 .. 0.76
   2 !   10.7   0.0   3.3e-05     0.034     297     330 ..     396     428 ..     394     437 .. 0.86
   3 !   73.7   0.0   2.5e-24   2.6e-21     329     526 ..     488     718 ..     459     719 .. 0.73

  Alignments for each domain:
  == domain 1    score: 71.4 bits;  conditional E-value: 1.3e-23
   TIGR00574  78 kkikllksLl.keaspleakylirlieeklrigiaektildalakaallsevkkedverafsltndlekvakkll.........................eeglrekekdls.iklgiplkPmLAerlksieealkklgq.........................kflvEtKyDGeRvqvHkdgdsvkiFSRrlenyteqypeslltefikkafka.vkslIldgEmvaidketgkilpFgtl 267
                  + + lk+++ +  sp+e k+l+r++++k+ +g++  t+l+ ++ +a           +++++ n+l+k++ +l+                         e      + +++  +lg  l Pm + r + ++ + ++++                          +++ E+K+DGeR+ vH +++ vk+ +R+++ yte+y  +l+ +      k  + ++IldgE+  +d+ ++ + pFg+ 
  MMETSP1061-20121228|5048_1  79 LRSNWLKRVIdMGLSPSEHKWLVRILQKKMEMGLGYVTVLKHMSPYA----------TELWNAHNNLQKICTILAdpayvdhrrkkealqskgqgcsstwE------P-QVQpAELGNTLSPMISIRSSFEKLM-SQTQThheeylkknypssgkthrplsiqfpALTAEIKLDGERMIVHINNGRVKMNTRNGKWYTELYTPVLGAPLRRSLTKYsNANVILDGEIESWDNLKKSLVPFGEN 303
                 4456677776235699*******************************..........45777777777777777777777777776666555432222221......1.2222457777778877665444433.333334678888888******************************************************8555444444445678*********************85 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 3.3e-05
   TIGR00574 297 gksLtdeplaeRreiLesilkeipnrieivekkq 330
                 g s ++ pl++R++iL +il+  +n++ei  ++ 
  MMETSP1061-20121228|5048_1 396 G-SIIHMPLMKRKQILYQILTVQENEVEICPTVV 428
                 4.899***********************987765 PP

  == domain 3    score: 73.7 bits;  conditional E-value: 2.5e-24
   TIGR00574 329 kqvssnaeeiekflneaise.gcEGlvvKnlksiYepgkRgenwlKvkpeyleelgdnlDLvviGaylGkgkr.tglygsfllavadees.eefktiekvgtG.............................ltdaeLeklgeklkklwidksesavleilsrsa...............................dekdirvdk..sivvevtlaeltespaykankskkagislRfPrll......rirsDkepedatnieeikely 526
                 +     ae +e f+ ++++e + EGlvvK+l+s+Y  g+R+  w K+kp+y+   +  +D v+iGa++  g r +g+ + fll+v d+     f t++ +  G                             +                               +                               + +di++d+  s+v+ v++ael+ s+ y        g++lRfPr++         + k+  + t+ +ei +++
  MMETSP1061-20121228|5048_1 488 ISK-MRAEAMESFYTKVVEEyKFEGLVVKDLASPYLFGSRKF-WWKFKPDYETDEAVDIDAVIIGATFATGLRnSGTPSAFLLGVVDKFDeTCFMTLNTINAGstsrdnmgeilkhtgfrkggdepmelgkwFR------------------------------EdnfelpgfiskrsfqrnstedlqgwafnktkHYPDIWIDPndSVVLTVKGAELVVSDEYSV------GLTLRFPRIKkvrlqsVHGDEKKATETTTDDEIWKIF 718
                 333.4789999*******98468*****************86.88***********************9997726889**********87588**********5555555555444444444333333333322..............................123334444444455555566666666666779999998874479*****************......**********777763334445555688888887776 PP

>> TIGR02779  NHEJ_ligase_lig: DNA polymerase LigD, ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   2.8e-10   2.9e-07      17      72 ..     228     288 ..     216     297 .. 0.85
   2 ?   -2.9   0.0      0.65   6.7e+02      97     111 ..     363     377 ..     354     379 .. 0.84
   3 ?    1.0   0.0     0.043        44     112     141 ..     398     426 ..     393     441 .. 0.75
   4 !   22.7   0.0     1e-08   1.1e-05     113     188 ..     461     537 ..     455     592 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 2.8e-10
   TIGR02779  17 lyevKyDGyRlllrieegkvrlisRngrdltekf.eelaaa.....akalklreavlDGEiV 72 
                   e+K DG R++++i++g+v++ +Rng+  te + + l  a     +++    +++lDGEi 
  MMETSP1061-20121228|5048_1 228 TAEIKLDGERMIVHINNGRVKMNTRNGKWYTELYtPVL-GAplrrsLTKYSNANVILDGEIE 288
                 57********************************5555.444787778888899******95 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.65
   TIGR02779  97 ltylaFDlleldged 111
                 l++ +FD+l++ g+d
  MMETSP1061-20121228|5048_1 363 LKFRVFDILHVAGND 377
                 6799*******9986 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.043
   TIGR02779 112 lrdlplseRkklLeellkeakaklaairls 141
                 + ++pl++Rk++L ++l  ++ +++ i   
  MMETSP1061-20121228|5048_1 398 IIHMPLMKRKQILYQILTVQENEVE-ICPT 426
                 6789*************99888775.4444 PP

  == domain 4    score: 22.7 bits;  conditional E-value: 1e-08
   TIGR02779 113 rdlplseRkklLeellkeakaklaairlseelesdgqalleaav.klglEGvvaKrkdsrYrsgrskdWlKlKnrkr 188
                 +++ l++R + Le+l  ++k   ++  +s+  +++++++++++v +++ EG+v K+ +s+Y  g  k W K K   +
  MMETSP1061-20121228|5048_1 461 TQAILQQRLENLESLDMRRKLGRSDNEISKMRAEAMESFYTKVVeEYKFEGLVVKDLASPYLFGSRKFWWKFKPDYE 537
                 67789**********88888877789999999999***999875279**************************6433 PP

>> TIGR02776  NHEJ_ligase_prk: DNA ligase D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.9e-08   5.1e-05       9      64 ..     229     289 ..     225     298 .. 0.81
   2 ?   -2.3   0.0      0.31   3.2e+02     103     125 ..     398     420 ..     394     437 .. 0.78
   3 !   14.1   0.0   3.3e-06    0.0034     104     177 ..     461     534 ..     454     570 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 4.9e-08
   TIGR02776   9 yEvKyDGYRvllriedgkvrLitrngldltekfpelvka.lk....llklldailDGEiVv 64 
                  E+K DG R++++i++g+v++ trng+ +te +  +  a l+    + +  ++ilDGEi  
  MMETSP1061-20121228|5048_1 229 AEIKLDGERMIVHINNGRVKMNTRNGKWYTELYTPVLGApLRrsltKYSNANVILDGEIES 289
                 7*****************************99975543313344447788999*****965 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.31
   TIGR02776 103 lralpleeRkkrLkellkaakld 125
                 + ++pl +Rk+ L ++l  ++ +
  MMETSP1061-20121228|5048_1 398 IIHMPLMKRKQILYQILTVQENE 420
                 6789*************988754 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 3.3e-06
   TIGR02776 104 ralpleeRkkrLkellkaakldeesaikaseq.veeeteallesacklklEGvvaKradsaYrsgrskdWlKlKc 177
                 +++ l++R ++L++l  ++kl  +s  ++s+   e+ ++   + ++++k EG+v K++ s+Y  g  k W K K 
  MMETSP1061-20121228|5048_1 461 TQAILQQRLENLESLDMRRKLG-RSDNEISKMrAEAMESFYTKVVEEYKFEGLVVKDLASPYLFGSRKFWWKFKP 534
                 6677999999999997777776.333333333144444556667889******************99*****995 PP

>> TIGR04120  DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.12   1.2e+02     220     274 ..     224     287 ..     195     302 .. 0.75
   2 !   17.5   0.0   3.3e-07   0.00034     359     431 ..     487     573 ..     459     588 .. 0.71
   3 !    3.5   0.0     0.006       6.2     479     509 ..     665     695 ..     658     709 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.12
   TIGR04120 220 pedyaaewkwDGiRvqlvkekgerrlysRtgedisdafPdlle.........alefdgvlDGel 274
                   + +ae k DG R+ +  ++g+ ++ +R g   ++ +  +l            + + +lDGe+
  MMETSP1061-20121228|5048_1 224 FPALTAEIKLDGERMIVHINNGRVKMNTRNGKWYTELYTPVLGaplrrsltkYSNANVILDGEI 287
                 556789***********************99999888866655455554333344556667766 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 3.3e-07
   TIGR04120 359 elaalRaesrsag.........ieGlmlkrrdsaYlaGRkkglWfkWkrd.....PllvDavllYaqrGhGkR.sslysDytfgvwde 431
                 e+ ++Rae+ ++           eGl++k   s+Yl G +k  W+k+k d      + +Dav++ a    G R s+  s +  gv d+
  MMETSP1061-20121228|5048_1 487 EISKMRAEAMESFytkvveeykFEGLVVKDLASPYLFGSRK-FWWKFKPDyetdeAVDIDAVIIGATFATGLRnSGTPSAFLLGVVDK 573
                 44445554444333444444459***************876.8*****76222225679**********9977255778888888776 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.006
   TIGR04120 479 vlevafegiqrskRhksGvalRfPRisRlRe 509
                 vl v    +  s  +  G+ lRfPRi+++R 
  MMETSP1061-20121228|5048_1 665 VLTVKGAELVVSDEYSVGLTLRFPRIKKVRL 695
                 66666666777888999***********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 3576.28
//
Query:       MMETSP1061-20121228|5051_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1641.26
//
Query:       MMETSP1061-20121228|5050_1  [L=1398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.15s 00:00:00.70 Elapsed: 00:00:00.40
# Mc/sec: 4613.02
//
Query:       MMETSP1061-20121228|5052_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.27
# Mc/sec: 3265.51
//
Query:       MMETSP1061-20121228|5054_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-23   81.6   0.0      2e-23   80.8   0.0    1.3  1  TIGR00160 MGSA: methylglyoxal synthase


Domain annotation for each model (and alignments):
>> TIGR00160  MGSA: methylglyoxal synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.8   0.0   4.9e-27     2e-23       5     121 ..     213     336 ..     209     351 .. 0.86

  Alignments for each domain:
  == domain 1    score: 80.8 bits;  conditional E-value: 4.9e-27
   TIGR00160   5 ialiahdkkkedlvnfvkkhkellkkyklyatGttGeliera.......tglaiekllsGPlGGdqqigaliaegkidlviflrdPltaqPhePdvkallrladvyniPlainlataeiliksl 121
                 +al++h+  k ++ +fv+++k+llkk+ l  t  t +++++        t +   +  sGPlGGd  + +li++g++  +if+rdP+ a Ph  d+ +llr a v+n  +a n +ta ++ ++l
  MMETSP1061-20121228|5054_1 213 LALVSHNGMKPSMREFVTANKNLLKKFRLTGTNSTINMLKEVfadepegTVVYGPACESGPLGGDAEMVGLITAGRVGGMIFFRDPMSAHPHRVDIDCLLRQAVVHNTMVAYNPTTAFMMTHTL 336
                 79**********************************999864222221144444689***********************************************************98887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 2419.80
//
Query:       MMETSP1061-20121228|5055_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1397.88
//
Query:       MMETSP1061-20121228|5058_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|5053_1  [L=923]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (923 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.12s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 3480.74
//
Query:       MMETSP1061-20121228|5056_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   13.0   0.0      0.054   11.5   0.0    1.8  2  TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase


Domain annotation for each model (and alignments):
>> TIGR00473  pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.3e-05     0.054      31      60 ..     130     159 ..     118     164 .. 0.86
   2 ?   -3.5   0.0      0.51   2.1e+03      69      97 ..     346     375 ..     340     393 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.3e-05
   TIGR00473  31 lilDslDGrvArktntvskfGkelDSlaDv 60 
                   +D +DG  Ar+t+++s +G+ +D   D 
  MMETSP1061-20121228|5056_1 130 YTFDCMDGKQARRTGQSSPLGQLFDHGFDC 159
                 579*******************99976555 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.51
   TIGR00473  69 llaysva.ynfeaililvaalfvlcgilRL 97 
                 ++ +s+a  +f ai++  ++ + ++ ++R 
  MMETSP1061-20121228|5056_1 346 MICFSMAkQSFAAIQMEAIPYYGVIWLIRK 375
                 567777767777777777777766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1966.18
//
Query:       MMETSP1061-20121228|5059_1  [L=790]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    4.9  71.2       0.03   11.4  35.1    2.2  2  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4  35.1   7.4e-06      0.03      94     226 ..     378     504 ..     344     515 .. 0.43
   2 ?   -0.8   8.7     0.036   1.5e+02      32     138 ..     605     716 ..     594     721 .. 0.50

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.4e-06
   TIGR02794  94 qarqkelekqraaaekaakkaeeaakekee........kkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEa..e..eakkkaeaeakKakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKa 226
                 ++++k+l + +a++      ++  a ek+e        k++++++ak k+++E+ka+ e++ +      e+Aa+k E+ +  +a a ++kk+++  e  e + k++ae+  a+ +a+++a             k+KA+a A+aKa
  MMETSP1061-20121228|5059_1 378 KEKLKDLREMKAKDFSV-SFKDGMANEKQElenqafyeKQREEAAAKLKAEEERKAAMEEQLRL---SRERAAAKEEQRR-QEALAIQQKKEQKlrEqkELADKRKAEQ-QAAYDAKKQA------------LKEKADAAAAAKA 504
                 34444442222222221.1233333333330000011144444445555444444444443322...2223444433333.2222333333332332223333333333.3333333333............4666666666665 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.036
   TIGR02794  32 egg.eiiqAvlvDpaavaqqanrlqqqekkaakkepkpeepkqerqkkleqqae....eakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaE 138
                 + +  + +A l+D  +++ +++  +++ ++a  +   p+++ ++++k  +  ++    + + +  ++  ++++l++++ +   + ++ae++ k +  ++    e+k++q+  
  MMETSP1061-20121228|5059_1 605 VPAsASASASLLDVHETNSTISVGANANANATSTSTDPTNESDAASKTTDASSQmgnlKEQLEGIPDSVDEANLKDAEEEFTNKLQAAEQEMKDALVEAASVKEKKQQQQPK 716
                 3333678888888888777777777777777777755555555555554444444433333334455555555544444444444444444444443333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       507  (0.123598); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.15s 00:00:00.68 Elapsed: 00:00:00.36
# Mc/sec: 2896.43
//
Query:       MMETSP1061-20121228|5057_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   10.4   0.0      0.065    9.9   0.0    1.1  1  TIGR03238 dnd_assoc_3: DNA phosphorothioation-dependent restriction protein DptF


Domain annotation for each model (and alignments):
>> TIGR03238  dnd_assoc_3: DNA phosphorothioation-dependent restriction protein DptF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   1.6e-05     0.065     147     229 ..     374     456 ..     367     489 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 1.6e-05
   TIGR03238 147 leeegvqsefilkLLakitakeee..nplyaaykedekkkvklklqenyellqepevqklivelllkvrlkfdqvlsaralldfi 229
                 le + ++ +f +++L+k   k+ +  np+++++  d  + +++ ++  y+ +  +e   l+ ++ l+ ++k  q+++a al ++i
  MMETSP1061-20121228|5057_1 374 LEATTINQNFSQQILRKSGRKDMDlpNPFFDEEDADGMEPASVAYR--YRKFALDENTTLVCRTELHGLVKKSQYMTAFALNEYI 456
                 566778899***********999999*******************9..********************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 2903.76
//
Query:       MMETSP1061-20121228|5060_1  [L=1399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1043.9  18.9   7.4e-164  545.1   1.3    3.3  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   4.9e-159  529.1  10.4    2.6e-81  271.6   0.6    3.0  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    7.9e-94  313.0  10.8    2.2e-62  209.2   0.2    3.7  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    4.9e-90  300.6  15.8    1.7e-59  199.8   0.9    3.5  3  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.9e-85  285.4  12.2    3.8e-53  178.6   0.1    4.0  3  TIGR00958 3a01208: antigen peptide transporter 2
    2.8e-85  284.8   9.4    3.4e-62  208.5   1.0    3.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
      8e-78  260.4   6.2    4.6e-49  165.4   0.0    3.3  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.4e-77  259.4  13.5    1.6e-54  183.1   0.1    3.5  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.2e-76  256.3  13.5    1.7e-49  166.6   0.0    4.0  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    7.7e-74  247.2  20.0    2.6e-48  162.8   2.9    4.1  3  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.8e-73  245.8   4.1    6.6e-44  148.2   0.2    3.2  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.2e-73  245.3   0.1    9.2e-40  134.9   0.0    2.5  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.5e-56  189.3   2.5    1.4e-37  127.4   0.1    3.0  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.9e-55  186.3   8.1    3.5e-30  102.8   0.0    3.7  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.6e-37  127.1   3.7      2e-19   67.8   0.0    3.5  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    5.7e-37  125.2   2.0    1.7e-21   74.6   0.1    3.5  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      2e-33  113.7   5.7    9.2e-19   65.6   0.1    3.8  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      8e-33  111.7   5.3    2.2e-15   54.6   0.6    3.9  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.1e-32  109.6   0.8    4.5e-16   56.6   0.0    3.5  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.2e-32  109.4   7.3    3.6e-19   66.8   0.7    3.6  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.4e-31  106.9   4.7      2e-16   58.1   0.2    4.1  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    5.7e-31  105.6   3.8    1.7e-15   55.0   0.2    4.2  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.2e-30  103.9   4.2    5.5e-17   60.1   0.2    3.8  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.7e-28   97.4   6.3      1e-07   29.5   0.0    4.3  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.1e-28   95.8   2.3    1.1e-13   49.0   0.1    4.1  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    5.1e-28   95.9   5.5    3.1e-15   53.9   0.2    3.4  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    9.4e-27   91.9   9.7    9.8e-14   49.0   0.9    3.9  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    9.8e-27   91.8  11.0    5.1e-17   59.9   0.9    4.2  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.2e-26   91.4   3.0    4.4e-12   43.5   0.1    3.5  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.3e-26   91.3   7.4    3.2e-14   50.9   0.3    3.7  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.5e-26   91.1   3.6    7.8e-12   43.1   0.3    3.9  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.5e-26   89.8   2.9    6.1e-14   49.8   0.1    3.5  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.8e-26   89.7   6.0    1.4e-15   55.0   0.6    3.6  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    6.5e-26   89.2   2.0    8.6e-12   42.8   0.1    4.4  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    9.4e-26   88.7  11.9    2.8e-14   51.1   1.1    3.9  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    6.6e-25   85.9   6.4    5.2e-14   50.0   0.3    4.0  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    7.2e-25   85.3   0.0    1.8e-14   50.9   0.0    2.3  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.4e-24   84.7   4.2    1.1e-12   45.9   0.6    4.3  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      2e-24   84.1  10.7    8.9e-13   45.9   1.7    4.0  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.9e-22   76.6   0.8    5.4e-06   23.9   0.1    4.6  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    4.3e-22   76.7   4.5    2.3e-11   41.6   0.1    3.5  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    7.3e-22   76.0   6.3    1.2e-09   36.1   1.4    4.1  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    5.7e-21   73.1   3.7    3.1e-09   34.5   0.3    3.9  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.4e-20   70.5   0.1    2.9e-07   27.3   0.1    3.8  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.1e-19   68.8   1.0    3.8e-12   44.2   0.1    3.8  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      2e-18   64.1   6.0      2e-11   41.0   0.1    3.2  2  TIGR00955 3a01204: pigment precursor permease
    2.4e-18   64.5   1.9    3.1e-09   34.7   0.0    3.4  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.2e-17   62.0   8.7    2.1e-07   28.4   0.7    3.9  3  TIGR01978 sufC: FeS assembly ATPase SufC
    1.4e-17   61.5   4.4    4.8e-10   36.8   0.2    3.7  3  TIGR01288 nodI: nodulation ABC transporter NodI
    2.5e-16   57.4   7.9    1.7e-06   25.1   0.0    3.8  3  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.7e-15   53.7   8.5    0.00021   17.8   0.0    4.2  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    8.6e-15   52.7   3.6    4.6e-05   20.9   0.1    4.4  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.8e-14   51.1   8.5      4e-06   23.5   0.0    4.1  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    2.9e-13   46.9   6.7    1.2e-09   35.0   0.2    3.7  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.9e-11   40.2   1.5     0.0029   13.1   0.0    3.5  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    6.3e-06   23.3   0.9     0.0039   14.1   0.2    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    9.7e-06   21.8   2.8      0.071    9.0   0.1    4.0  4  TIGR00630 uvra: excinuclease ABC subunit A
      9e-05   20.1   2.1      0.025   12.2   0.1    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0017   15.6   2.8      0.064   10.4   0.1    2.4  2  TIGR00436 era: GTP-binding protein Era
     0.0036   14.2   1.0       0.16    8.9   0.2    2.3  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0068   13.5   0.1        2.2    5.2   0.0    2.6  2  TIGR02524 dot_icm_DotB: Dot/Icm secretion system ATPase DotB
  ------ inclusion threshold ------
      0.014   12.4   3.9       0.45    7.5   0.1    2.6  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
      0.023   11.7   0.1       0.94    6.4   0.0    2.3  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
      0.032   11.9   2.7       0.82    7.3   0.2    2.5  2  TIGR00152 TIGR00152: dephospho-CoA kinase
      0.076    9.7   4.4       0.13    8.9   3.0    1.3  1  TIGR01000 bacteriocin_acc: bacteriocin secretion accessory protein
      0.091   10.1   1.7        1.6    6.0   0.1    2.9  3  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.7   3.3   1.4e-88   8.6e-87     290     620 ..      96     425 ..      60     429 .. 0.94
   2 !  217.1   0.1   1.1e-66     7e-65     653     866 ..     529     754 ..     523     775 .. 0.88
   3 !  545.1   1.3  1.2e-165  7.4e-164     922    1520 ..     780    1395 ..     761    1397 .. 0.92

  Alignments for each domain:
  == domain 1    score: 289.7 bits;  conditional E-value: 1.4e-88
   TIGR00957 290 eveallvkspqkerkpsllkvlyktfgsyflls.flfkaiqdllsfagpkllellikfvndrkapdwqgylytallfvsallqtlvlqqyfhiifvsgvriktavvgavyrkalvitnsarksstvgeivnlmsvdaqrfmdlatylnllwsaplqvilalyllwlnlgpsvlagvavmvllvplnavvavktktyqvaqmkskdnriklmneilngikvlklyawelafkdkvlairqeelkvlkksaylaavgtftwvctpflvalitlavyvtvdennildakkafvslalfnilrlplnilpmvisslvqasvslkrlriflsqeele 620
                 e+e l +++   + +psl+ +l +++g   ++  f+ k+i+d  +f+gp++l+ +i f++  + p  +g+++t  +  s l  ++ l++yf  ++  g++i+t+v+ avy kalv++   r s ++gei nlmsvdaqr+ dl+tyl  +w +  q+ ++l+llw++lgps lag+a++ +++p+   va  +   q + m skdnr+ + +e+l  +kv+kl awe  f d+++ +r++elk l +  y ++ + + w c p+lv+l+t+a yv++   n ld  +a  s+alf+ilr+pl +lp vi  +v+a vsl r++ fl  ee e
  MMETSP1061-20121228|5060_1  96 EEEQLKAEARGGKSEPSLMMALARAYGFDCIVGgFFLKLIHDSCVFVGPQVLNKMILFLETDERPLSYGFMLTLAVTASQLTMSFCLRHYFMKCYKFGLKIRTGVMVAVYEKALVLSAGERYSRSLGEITNLMSVDAQRLQDLTTYLHAIWFSFYQIAFSLFLLWQQLGPSTLAGLAIICVMIPITKKVATYIGGLQKKLMTSKDNRVDMNTEVLGAMKVVKLQAWEEPFMDRITDLREKELKDLLTYIYATCLSIMLWSCVPLLVSLSTFAAYVYLG--NDLDVATALTSVALFEILRFPLFMLPSVINRIVEAGVSLDRVKSFLLCEEHE 425
                 445555555557889************9988852778************************************999999999**************************************************************************************************************************************************************************************************96..66********************************************999876 PP

  == domain 2    score: 217.1 bits;  conditional E-value: 1.1e-66
   TIGR00957 653 tlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvpqqawiqndslrenilfgk...aleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvi......gpkgllknktrilvthgisyl..pqvdviivlsdgkisemgsyqelld.rdgafaeflrtyasae 866
                  l+ ++++   g lvavvg vg gkssll  +l+e+  + g+v++kg +ay  q  +i n++++ nilf +   +++e++y+ ++e+cal  d+e+lp+gdrteigekg+ lsggqk rv+laravy +adi ++dd lsavdahvakh+fe+ i      g    +++++ il t ++ +l  p+vd iivl +g+i e gsy+el d +   f+ fl    ++ 
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAYFSQTPFIANATVKANILFSHvdePVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEECItkdllaGTGNCFEKRSVILATNALQHLnhPRVDKIIVLREGRIVEQGSYKELADdKSSEFSRFLAVIEETG 754
                 588999***************************************************************974446899**************************************************************************998222222333456677889*******987799*********************9725567999998766554 PP

  == domain 3    score: 545.1 bits;  conditional E-value: 1.2e-165
   TIGR00957  922 sssaelqkae.akeetwklmeadkaqigqvklsvywdyakai.glfitllsillflcnsvsalasnywlslwtddavvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalf.....avisrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetekeapwqie.etappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfv.........sa....lpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqrgifysmakda 1520
                  +s+ + +++e +k+++ klm  +  +ig+v + vy  +a+a  gl + ++++l f + +   + s++wl+ w+     +gt++ +   l++++ + +++ i +++  + v + g+ asr ++ +ll+ ++ +pm+ff++tp g+++nrfs +++++ds l   ++ ++++++nv++a++v    +p +++ i+pl l y   qrf++ + r+lkrl+svsrsp+y+ + et+ gv+ ira++ +  ++ +    +d++q+ayy   va+ wla+rlelvg  ++ +a+lf     a+ + +   agl gl++sy+l +t  lnw vrm+s+le+ +++ver++ yse  +eap  ++ + + p+swp  g + f++ slryr++l  vl+ l++++  g kvg+vgrtgagks+l ++l+ri e   g+i idg +  kigl +lr+++++ipqdpvlfsg++r nldpf+++ deev   l    l + +         s+    + + l+ +  egg n+svgqrql+ +arall  + i+++deataavd +td  iq  +r++f d t +tiahr+ntimd   +lv+d g+ aefd p +l+++ g+f  + + a
  MMETSP1061-20121228|5060_1  780 ASIRKSERTEgSKKDNSKLMTVEERAIGSVGIDVYLYWARAAgGLWVPFAVVLAFAGVECFGVLSKWWLTYWSS----HGTEHSQAYFLGIFGLINLMNVIGIFLRLIFVMMAGLRASRKIYSNLLQVIMHAPMAFFDTTPVGRIINRFSLDMYTIDSQLMMTVRSYISTILNVVSALVVNTGVSPAFTIGIIPLLLFYAAQQRFFTMTYRELKRLDSVSRSPIYALLGETIDGVATIRAYDSEASLMRRMKNMLDAQQNAYYLLCVAQCWLAIRLELVGTLVITLACLFplwhyALHGADPKFAGLAGLAISYALSITQSLNWSVRMASDLEASMISVERVRSYSEVPTEAPRDMDvDNTLPESWPSGGSIVFKEASLRYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDPFGEFPDEEVSSVLTRVGLFTTItgststeslSSlglgQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIAKGGMFRDLVQAA 1395
                  55666666652578999******************9999987369***************************96....6888889999*********************************************************************************************************************************************************************************************************8444435566777789************************************************9987356679******************************************************************************************************************9888876555433311111111133222256789******************************************************************************************************9887765 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.5   2.3e-32   1.5e-30       7     404 ..      42     449 ..      39     468 .. 0.87
   2 !  159.3   0.0   3.1e-49   1.9e-47     412     645 ..     498     747 ..     477     796 .. 0.84
   3 !  271.6   0.6   4.2e-83   2.6e-81     920    1452 ..     856    1395 ..     847    1398 .. 0.89

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 2.3e-32
   TIGR01271   7 ekanvlsklffswtrpilrkgy.rkklelsdiykip..svdsadnlseklerewdrelasa.....kkkpkllnalrrcflwrflfygillylge.vtkavqplllgriiasydaknaeereiayylalglsllfivrtlllhpaifglhhlgmqlrialfsliykktlklssrvldkistgqlvsllsnnlnkldeglalahfvwiaplqvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycweeamekiienirqvelkltrkvayvryfsssafffsgllvvvlsvvpya.likgiilrrifttisycivlrmtvtrqlpsaiqtwydslgairkiedflqkeeykvl.eynltt.tevelvnvtaswde 404
                 e+an+ skl f w +p++r g  ++kl+  di k+p      +dnl + + + w+ e   a     k +p l+ al r + +  +  g +l l    +  v p++l ++i   ++++++  + ++ l+l ++   ++  + l+   +   ++g+++r  ++  +y k l ls+      s+g++  l+s + ++l++  +  h +w +  q+++ + l+w++l  s++ gl+++ ++  +   ++  ++  ++k     ++r+ + +e++  ++ vk  +wee +   i ++r++elk      y   +s   +    llv +++   y  l + + +   +t+++   +lr+ +   lps i+   ++   + +++ fl  ee+  + e +l    +v +  vta+++ 
  MMETSP1061-20121228|5060_1  42 EEANLWSKLTFGWMEPLMRFGNaKQKLDPVDITKMPlpHDGRTDNLRKVFIQAWEEEQLKAearggKSEPSLMMALARAYGFDCIVGGFFLKLIHdSCVFVGPQVLNKMILFLETDERP-LSYGFMLTLAVTASQLTMSFCLRHYFMKCYKFGLKIRTGVMVAVYEKALVLSAGERYSRSLGEITNLMSVDAQRLQDLTTYLHAIWFSFYQIAFSLFLLWQQLGPSTLAGLAIICVMIPITKKVATYIGGLQKKLMTSKDNRVDMNTEVLGAMKVVKLQAWEEPFMDRITDLREKELKDLLTYIYATCLSIMLWSCVPLLVSLSTFAAYVyLGNDLDVATALTSVALFEILRFPLF-MLPSVINRIVEAGVSLDRVKSFLLCEEHEHIgEGDLDEnGNVRMSTVTAYYES 449
                 89*****************996379*********973145579***********987533212333899**********************9875156679*********988776554.5677788888877788888888888999999999********************************************************************************9999999999999************************************999999********976666666666666666667788888899997245789999**************996.69*********************9999987747888751589*******9975 PP

  == domain 2    score: 159.3 bits;  conditional E-value: 3.1e-49
   TIGR01271 412 kvkqenkerktangddglffsnl.sly.vtpvlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgrisfspqvswimpgtikdniifgls...ydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclcklla........nktrilvtsklehlk..kadkilllhegscyfygtfselqakkp.dfsskl 645
                    ++n+++k++ g++      + sl      lk i+++ + g+l+av g  gsgkssll  ilgel    g +   g++++ +q+++i   t+k ni+f       de +y+  i++c l+ d+ +l+  d+t +ge gitlsggq+ar++laravy++ad+ ++d  +s +d    k++fe+c+ k l         +++ il t  l+hl   + dki++l eg     g++ el ++k  +fs  l
  MMETSP1061-20121228|5060_1 498 SQNNNNNNNKETTGQKLEDPESVgSLSsNLLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAYFSQTPFIANATVKANILFSHVdepVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEECITKDLLagtgncfeKRSVILATNALQHLNhpRVDKIIVLREGRIVEQGSYKELADDKSsEFSRFL 747
                 445566667777765433322221222023579*******************************************************************86423379*******************************************************************************9554122222213556999*******85579********************987751565444 PP

  == domain 3    score: 271.6 bits;  conditional E-value: 4.2e-83
   TIGR01271  920 tstsayyilyiyvgvadsllalgflrglplv.htlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavv.f....iaiatnd.egegevgiiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrllste.geiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvi......eqfp.......dkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkqydsiqkllneasllkqalsaa 1452
                  t+ s+ y l i+ g+ + +  +g++  l +v  + l  s++++ ++l+ +++apma ++t   gri+nrfs d+ +id  l +t+  +i  +l v+ a++v + + p   +  ip+ + +   + +f  t ++lk+l+s +rspi++ l  ++ g+ t+ra+  ++ +   ++  l+     ++l   +  w+ +r++++  l ++ +  f     a+   d +  g  g+ ++ a+ i+ +l+w+v  + d+++ m sv+rv  + ++p+e ++               ++n+ + + wpsgg +  k+ + +y  +   vl+ l + +  g +vg++grtg+gkstl+ +llr+++ + g+i idg     + l k r  + vipq   ++sgt+r nldp+ ++ dee+  v   vgl + i      e +        + l+ ++ +gg  +s g +ql+ +ar++ls a i+++de +a +d  t   i+k ++  f++ t i   hr++++++ + +lv++  +  ++d  +kl+++  ++++ + aa
  MMETSP1061-20121228|5060_1  856 TEHSQAYFLGIF-GLINLMNVIGIFLRLIFVmMAGLRASRKIYSNLLQVIMHAPMAFFDTTPVGRIINRFSLDMYTIDSQLMMTVRSYISTILNVVSALVVNTGVSPAFTIGIIPLLLFYAAQQRFFTMTYRELKRLDSVSRSPIYALLGETIDGVATIRAYDSEASLMRRMKNMLDAQQNAYYLLCVAQCWLAIRLELVGTLVITLAClFplwhYALHGADpKFAGLAGLAISYALSITQSLNWSVRMASDLEASMISVERVRSYSEVPTEAPRDM------------DVDNT-LPESWPSGGSIVFKEASLRYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDsGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDPFGEFPDEEVSSVLTRVGLFTTItgststESLSslglgqvQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIAKGGMFRDLVQAA 1395
                  566777777776.667778888877665555167799***********************************************************************************************************************************99*********9999999999**********987766544414322234544441457999*******************************************66544............45554.7889**********************************************************97659***********************************************************8877332222222222222225789999*************************************************************************************************99887665 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.3     0.012      0.77      85     350 ..     195     456 ..     171     473 .. 0.73
   2 !  102.3   0.3   8.1e-32   5.1e-30     346     558 ..     527     738 ..     479     744 .. 0.86
   3 !  209.2   0.2   3.5e-64   2.2e-62      62     567 ..     867    1393 ..     830    1398 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.012
   TIGR02203  85 kvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsW.qltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDsppekdeGtralervrGkvefrnvtfrypgddreald 350
                 k+ + + ++++ek l+l++     +s g++ + + +d+++  + +t  l  +   ++  i+   +ll+ +    tl+ ++++ v+  +++ v+  +  ++k+   s  +   +  e l   +vvkl + +e    R   + ++ ++  l    a+ ls  l    + + +++  ++a v   ++   +  l++ ++    l  pl  L  v +++ +  ++ ++v ++l  ++ +  G+  l++ +G+v++  vt+ y++ ++++ d
  MMETSP1061-20121228|5060_1 195 KIRTGVMVAVYEKALVLSAGERYSRSLGEITNLMSVDAQRL-QDLTTYLHAIWF-SFYQIAFSLFLLWQQLgPSTLAGLAIICVMIPITKKVATYIGGLQKKLMTSKDNRVDMNTEVLGAMKVVKLQAWEEPFMDRITDLREKELKDLLTYIYATCLSIMLWSC-VPLLVSLSTFAAYVYLGNDLDVATALTS-VALFEILRFPLFMLPSVINRIVEAGVSLDRVKSFLLCEEHEHIGEGDLDE-NGNVRMSTVTAYYESLKQQMKD 456
                 56666778899999999998888888999888888887654.555666666554.4555666677788765245777777777777777777777778888888888888888899999*******99999999999999999888888888888877655544.3444555555555555555433444444.444556677999*****999999999*****9999999999999999987.79********999886655444 PP

  == domain 2    score: 102.3 bits;  conditional E-value: 8.1e-32
   TIGR02203 346 realdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgel.eevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlv.....qaaL....erlmkgRttlviahRLstiek..aDrivvlddGkiverGtheeLlar 558
                    l+ i+++ ++Ge va+vG  GsGks+l+n +   +   sG++ +             + ++a+ sq  ++ + t+ +n+ +++  e vde++ ++a++   lk+ ++ lp G  te+Ge+g  LsGGq+ R+a+aRa++++a i i+D+a sa+D+   +++      + L     +  ++R  ++    L  +++   D+i+vl +G+ive+G+++eL + 
  MMETSP1061-20121228|5060_1 527 LLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEV-------------KGKLAYFSQTPFIANATVKANILFSHVdEPVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLfeeciTKDLlagtGNCFEKRSVILATNALQHLNHprVDKIIVLREGRIVEQGSYKELADD 738
                 55799***************************998888888887744.............5689**********************9567999*****************************************************************99866641111122221221456788888888899*99987447*******************9765 PP

  == domain 3    score: 209.2 bits;  conditional E-value: 3.5e-64
   TIGR02203   62 vglv.vlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvq.aq..agaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDsppek....deGtraler..vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenva.Ygeleevdeaeveealaa.........aylkdlvdklpeG....ldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLhk 567 
                   gl+ ++  i+ f+   ++ ++  +  r++  +l++ ++++p a+fd +++g++++r+  d   + s+++  +   +   l v+++l+v   +s ++t+ ++ ll   a   r ++  +r++++    s + +   + e+++g   ++ ++++++  +R +++ +  ++    +  a+      ++l++++ +++  l  l++ a   a+   +G     i+ +l ++++l     +++ l   +++ e+v +  + p+e+    d  +  +e     G++ f++ + ry++    +l+++++++  G  v +vGr G+Gkstl+  l R +e dsG+il+Dg d +++ L++LR+++a++ qd vLF +ti  n+  +ge    +++ev ++l+          +  ++ + +l  G    l+ +v e gs+ s GqRq l iaRall  a i+i+Deat+a+D++ + ++q+ +     + t + iahR+ ti ++D i+v+d+Gk  e    e+L+a+ G++  L +
  MMETSP1061-20121228|5060_1  867 FGLInLMNVIGIFLRLIFVMMAGLRASRKIYSNLLQVIMHAPMAFFDTTPVGRIINRFSLDMYTIDSQLMMTVRSYISTILNVVSALVVNTGVSPAFTIGIIPLLLFYAAQQRFFTMTYRELKRLDSVSRSPIYALLGETIDGVATIRAYDSEASLMRRMKNMLDAQQNAYYLLCVAQCWLAIRLELVGTLVITLACLFPLWHyALhgADPKFAGLAGLAISYALSITQSLNWSVRMASDLEASMISVERVRSYSEVPTEAprdmDVDNTLPESwpSGGSIVFKEASLRYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDpFGEF---PDEEVSSVLTRvglfttitgSTSTESLSSLGLGqvqsLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIAKGGMFRDLVQ 1393
                  44431455667799999999999999*******************************************************************************************************************************************9999999999****999999*99987665544444443132013333444444456667889999999999***************998877776522113333333434578*************************************************************************************************9646665...44444444444000000000445555566655544447889**************************************************************************************************998876 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   1.5    0.0011     0.066      38     224 ..     144     330 ..     113     420 .. 0.65
   2 !   98.7   0.2   1.1e-30   6.9e-29     352     563 ..     526     737 ..     522     748 .. 0.81
   3 !  199.8   0.9   2.7e-61   1.7e-59      58     573 ..     860    1393 ..     849    1395 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0011
   TIGR02204  38 plavrklideGfskeesellneafalllvvvl.vlalatalrfylvs..slGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlv..itsvkltslvllavPl.vllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfd 224
                 p+ + k+i   f + +++ l   f+l l+v++  l+++  lr+y++   + G ++ + +  av+++ l ls++   + + ge+   ++ d++ l+ +     +i + +   +  +l +l   +    l++l ++ v + +   + ++   ++k+  +s+d+  d+++   e+l a+k v+  a ee   +r  
  MMETSP1061-20121228|5060_1 144 PQVLNKMIL--FLETDERPLSYGFMLTLAVTAsQLTMSFCLRHYFMKcyKFGLKIRTGVMVAVYEKALVLSAGERYSRSLGEITNLMSVDAQRLQDLTTYLHAIWF-SFYQIAFSLFLLWqqLGPSTLAGLAIICVMIpITKKVATYIGGLQKKLMTSKDNRVDMNT---EVLGAMKVVKLQAWEEPFMDRIT 330
                 566666664..566777788888888887776267888889**99963379**********************9999999***************99766555544.444444555555311445567766554433313345566666777888888888777765...66666666544444444444444 PP

  == domain 2    score: 98.7 bits;  conditional E-value: 1.1e-30
   TIGR02204 352 dqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpda..sdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaes.....eqlvqqal.e...elmkgrttlviahrLatvlk..adrivvldkGriveqGthaeLia 563
                 + ++l+ ++++ +pGe va+vG  G+Gks ll+ +l      sG++              ++ +la  +q + +  a v+ ni + ++d    +e+ ++a + +  +  ++ lp G  t++Ge+g+tLsGGqk r+a+ara+ ++a i ++d+a sa+da+      e+ + + l +   +  ++r  ++    L  + +   d+i+vl +GriveqG+++eL  
  MMETSP1061-20121228|5060_1 526 NLLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVE-------------VKGKLAYFSQTPFIANATVKANILFSHVDEpvDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVakhlfEECITKDLlAgtgNCFEKRSVILATNALQHLNHprVDKIIVLREGRIVEQGSYKELAD 737
                 56789***************************999866666666655.............55689**********************9962145667778888888889***************************************************8621222333333331211134556666666677888875338*******************975 PP

  == domain 3    score: 199.8 bits;  conditional E-value: 2.7e-61
   TIGR02204   58 neafalll.vvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvklt.slvllavPlvllPi...llfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikarallia...vvivlvfg.avvlvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaP.aqpkalpa..kvrgeiefeevkfay.ParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvlenir.yGr.pdasdeev......eaaakaaeadefisklpeG....ydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlar 573 
                  + +f+ ++ ++ l+  ++ +lr+ +v++ G r +  + +++ + +++   affd++  g ++ r++ d   + s     l + +r+ + +i  ++  +++++ ++ ++ + ++Pl+l+      +f+   r+l r    + + + a  ge+++ + t++ay se++  +r ++ +++  +a      a+++l     +v +lv++ a    lW  a     +   aG  +  + ya+ +++sl     + ++l+ +  ++er+    ++ ++       +++lp+  +  g i f+e +++y P  p   +l+gld+++  G +v +vG +GaGkstl+  llr  +  sG+il+dG d r++  ++lr+++a++pqd++lf++ ++ n+  +G+ pd     v       +  + ++++e +s+l  G     + ++ e g ++s Gq+q + iara+l  a i+++deat+a+da+++ ++q+ + +  ++ t + iahr+ t++++d i+v+d G+  e  + ++Liakgg+++ l++
  MMETSP1061-20121228|5060_1  860 QAYFLGIFgLINLMNVIGIFLRLIFVMMAGLRASRKIYSNLLQVIMHAPMAFFDTTPVGRIINRFSLDMYTIDSQ----LMMTVRSYISTILNVVSALVVNTGVSpAFTIGIIPLLLFYAaqqRFFTMTYRELKRLDSVSRSPIYALLGETIDGVATIRAYDSEASLMRRMKNMLDAQQNAYYLLCVAQCWLAIrleLVGTLVITlACLFPLWHYALHGA-DPKFAGLAGLAISYALSITQSLNWSVRMASDLEASMISVERVRSYSEVPTEAPRDmDVDNTLPEswPSGGSIVFKEASLRYrPGLP--RVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDpFGEfPDEEVSSVltrvglFTTITGSTSTESLSSLGLGqvqsLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIAKGGMFRDLVQ 1393
                  56666555156677889***************************************************9887765....555566655555554444444444432566777777776431115667777777766555555556667******************999999999988888777777777775311133344443133445787665544.4456898899999*****************************9988887776544145677776226789***********44555..89******************************************************************************9659973444333331111114567789999****99877222256678999************************************************************************************************9975 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.7    0.0021      0.13     253     384 ..     217     343 ..      89     391 .. 0.67
   2 !  102.7   0.7   5.9e-32   3.6e-30     494     705 ..     527     740 ..     523     746 .. 0.83
   3 !  178.6   0.1   6.1e-55   3.8e-53     226     711 .]     886    1392 ..     855    1392 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0021
   TIGR00958 253 denktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalay 384
                  +   Ge+t  +s D++ + +  +    +       +++l+++  +l p  tl  l  + +++ ++k++ +++  l++++  +  +  ++  E+l++++ V+  a Ee     f+++++++++ + k  l+y
  MMETSP1061-20121228|5060_1 217 YSRSLGEITNLMSVDAQRLQDLTTYLHAIWFSFYQIAFSLFLLWQQLGP-STLAGLAIICVMIPITKKVATYIGGLQKKLMTSKDNRVDMNTEVLGAMKVVKLQAWEEP----FMDRITDLREKELKDLLTY 343
                 3456799999999999999775544444444333333333333334444.46777888888999**************************************9999986....4455555554444444444 PP

  == domain 2    score: 102.7 bits;  conditional E-value: 5.9e-32
   TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltkte.deevtaaakaanahdFise.lekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa...........eveqllqe......sksaksrtvlliahrLstve..kadkilvlkkgsvvelGthkqLmeked 705
                    lk ++f  +pGe va+VG  GsGKS+    +    +  +G+v              ++ k+a   q P + + +v+ Ni +   + + dee    a +++a +  +e l+ g  te+gekG  lsgGqk r+A+ARA+ ++  + i+D+A SA+Da                  +       +++++r+v+l ++ L+  +  ++dki+vl++g++ve+G +k+L +++ 
  MMETSP1061-20121228|5060_1 527 LLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVE-------------VKGKLAYFSQTPFIANATVKANILFSHVDEPvDEEKYQRAIECCALKHDMEmLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAhvakhlfeeciT------KdllagtGNCFEKRSVILATNALQHLNhpRVDKIIVLREGRIVEQGSYKELADDKS 740
                 5679************************987665543344444443.............45689999******************999999888888888888876655516999********************************************766665554322......1333334899*************99874479********************99875 PP

  == domain 3    score: 178.6 bits;  conditional E-value: 6.1e-55
   TIGR00958  226 eyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakan..qvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellglli.lvlvLayGgqlvlegkv.ssgnLvsFlL.YqlqlgeavreLsevysellkavGasekvFeyldRkPqlelsgtl...apk..nleGkveFqdVsFsYPsrpdkp.vlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFisele.............kgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykqlv 711 
                   +a  r +++i ++l++ +++  ++Ffd++++G ++ R s D +t+ + l  +v  ++ ++  ++++l++   +Sp  t+  +  l +  + ++ f  +y++l++   ++v+++    +  E + g+ T+r + +E + ++r k+ l+  ++ +    +a+  + +  el+g+l+ +++ L+   +  l+g+  +   L    + Y l++++ ++  + + s+l  +  + e+v +y +   + +++       p+     G + F++ s  Y  rp  p vlk+L + l  G+ v +VG  G GKSt +  l +  + ++G++l+Dg + +++    l++++a++ q+Pvlfsg++r N+     + +deev ++  + +  + i++ +             +  + +v e Gs  s+Gq+q + iARAL+    ++i+DeAt+A+Da++++ +q+    ++++ t + iahr++t+  +d ilv+  g+  e  + ++L +k ++++ lv
  MMETSP1061-20121228|5060_1  886 MMAGLRASRKIYSNLLQVIMHAPMAFFDTTPVGRIINRFSLDMYTIDSQLMMTVRSYISTILNVVSALVVNTGVSPAFTIGIIPLLLFYAAQQRFFTMTYRELKRL--DSVSRSPiyALLGETIDGVATIRAYDSEASLMRRMKNMLDAQQNAYYLLCVAQCWLAIRLELVGTLViTLACLFPLWHYALHGADpKFAGLAGLAIsYALSITQSLNWSVRMASDLEASMISVERVRSYSEVPTEAPRDMDVdntLPEswPSGGSIVFKEASLRY--RPGLPrVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLD-PFGEFPDEEVSSVLTRVGLFTTITGSTsteslsslglgqvQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKvmRSEFADATCITIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIAKGGMFRDLV 1392
                  4555678899*******************************************************************99755444444445567788888888764..7777776116668*****************************************9999999998875156788888888888865155667666445********************************9976666554433101333124679**********9..666544*******************************************************************************96.3558899999999888887777776542222222222222568999***********************************************96566789********************************************9997 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9   0.9   9.1e-25   5.6e-23     473     687 ..     530     745 ..     524     749 .. 0.78
   2 !  208.5   1.0   5.5e-64   3.4e-62     197     691 ..     879    1394 ..     864    1397 .. 0.84

  Alignments for each domain:
  == domain 1    score: 78.9 bits;  conditional E-value: 9.1e-25
   TIGR01846 473 lsnlsldikaGeviGivGpsGsGkstltk.llqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialak..PaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyes.....eavimrnlre....ickgrtviiiahrlstvra..adrilvlekGkivesGkheellak.eglyak 687
                 l+ ++++ k+Ge++ +vG  GsGks l   +l  l v   G+v v g             +++   q  ++ + +++ ni  ++    ++eek   a +    ++ ++ l+ G  te+gekG +lsGGq+ r+alara+  +  i i+d+a sa+d++      e+ i ++l +      + r vi  +  l+ + +  +d+i+vl +G+ive+G+++el  +  + +++
  MMETSP1061-20121228|5060_1 530 LKRINFECKPGELVAVVGGVGSGKSSLLNgILGELRV-LSGNVEVKG-------------KLAYFSQTPFIANATVKANILFSHvdEPVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVakhlfEECITKDLLAgtgnCFEKRSVILATNALQHLNHprVDKIIVLREGRIVEQGSYKELADDkSSEFSR 745
                 889*********************9976515555554.346666655.............455555666666666666666554114467888888888888888899************************************************985334447888888865111145789****999***99864489*******************9873455665 PP

  == domain 2    score: 208.5 bits;  conditional E-value: 5.5e-64
   TIGR01846  197 llrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvr.eleqirefltgsaltvvldllfvvvflavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaall.lwfGaklvlkGel.svGqlvafnm.lagrvsqPvlrlaqlWqdfqqvkialerlGdildsPteass..agkaalpel...kGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialak..Paiseekvia....aaklaGah..dfis....elkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqq 691 
                  +lr   +  +  r    + ++l + ++  P+++f++  vG ++ r   ++ +i + l  +    +  +l vv  l v    sp +t+ ++  l++y++   + + + r+    +  + +   ++l e++ g+ ti+a   e  + rr +++l a+ +a + +  +  + +  +el+  l++ l  l+   +  l+G+      l  + + +a  ++q +   +++  d     i++er+    + Ptea +      +lpe     G+i f++  +ry++  p vl+ l ++++ G  +G+vG++G+Gkstl   l r+   + G++l+dg d   +  + lr +++v+ q+ vlfs++ir n+      P+ ++  v++     ++++G+   + +s     + q  + +v e G+++s Gqrq + +aral++   i+i+deat+a+d++++a i++ +r+  ++ t i+iahr++t+ ++d ilv++ Gk +e  k e+l+ak+g++ +l q 
  MMETSP1061-20121228|5060_1  879 FLRLIFVMMAGLRASRKIYSNLLQVIMHAPMAFFDTTPVGRIINRFSlDMYTIDSQLMMTVRSYISTILNVVSALVVNTGVSPAFTIGIIPLLLFYAAQQRFFTMTYRELKRLDSVSRSPIYALLGETIDGVATIRAYDSEASLMRRMKNMLDAQQNAYYLLCVAQCWLAIRLELVGTLVITLAcLFPLWHYALHGADpKFAGLAGLAIsYALSITQSLNWSVRMASDLEASMISVERVRSYSEVPTEAPRdmDVDNTLPESwpsGGSIVFKEASLRYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDPFGefPDEEVSSVLTrvglFTTITGSTstESLSslglGQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIAKGGMFRDLVQA 1394
                  5555555555566666777889999999*****************854999**9999877777777777778888999999******************99999999964444445677889*******************************************99*9999***999876554155455777777541344444444327899999999999999**********************9873345568888533379************************************************************************************************97432125555544443111145667764124444111145677999****************************************************************************************************999875 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.9     0.017       1.1     228     485 ..     197     449 ..     126     466 .. 0.76
   2 !   90.3   0.0   3.9e-28   2.4e-26     489     699 ..     529     739 ..     480     747 .. 0.84
   3 !  165.4   0.0   7.4e-51   4.6e-49     208     707 ..     873    1393 ..     858    1394 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.017
   TIGR01193 228 sidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalastilslfldlsilvivglvlvlqniklfll.slvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvirekltlGqlltfnallsyflnPleniinlqpklqaarvannrlnevylvdsefkekkkltelenlngdievndvsysyGy 485
                  + +++   +  + l      +r  Gei+  ++  ++ ++ l++ + ++++ +   ++ +l+l+ q      l  l  i v + i          l+k+ m ++        e l  ++ +k  + ee  +++i++  ++ l+  l+y+ a     +l + + l ++  +  + a++ + ++l +   lt  al   +  Pl  +  +  ++ +a v+ +r+   +l +  ++ ++        ng+++++ v+  y  
  MMETSP1061-20121228|5060_1 197 RTGVMVAVYEKALVLSAGERYSRSLGEITNLMSVDAQRLQDLTTYLHAIWFSFYQ-IAFSLFLLWQQLGPSTLaGLAIICVMIPITKKVATYIGGLQKKLMTSKDNRVDMNTEVLGAMKVVKLQAWEEPFMDRITDLREKELKDLLTYIYATCLSIMLWSCVPLLVS--LSTFAAYVYLGNDLDVATALTSVALFEILRFPLFMLPSVINRIVEAGVSLDRVKSFLLCEEHEHIGE---GDLDENGNVRMSTVTAYYES 449
                 4455555555555555555567899999999987777778888888888888765.56788888887654444044455566666666666677888888887777667777888999999*99*******************************999999987655..556789999************************99999999************99999875544433...45567788888888777755 PP

  == domain 2    score: 90.3 bits;  conditional E-value: 3.9e-28
   TIGR01193 489 vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllga.kenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldl.....ltekkivenllk.....lkdktiifvahrlsvak..ksdkiivldeGkiieqGshkellken 699
                  l+ i+++ k  e +++vG  GsGks+l   +++     sG++++                ++y  q Pfi + ++  n+l+    e v++e+ ++a+e   +k+d+e lp G  te+ e++ ++sgGqk r+alara+  ++++ i+d++ s +d      l e+ i ++ll      ++++++i+ +  l+  +  ++dkiivl eG+i+eqGs+kel + +
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVK-------------GKLAYFSQTPFIANATVKANILFSHvDEPVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAhvakhLFEECITKDLLAgtgncFEKRSVILATNALQHLNhpRVDKIIVLREGRIVEQGSYKELADDK 739
                 578999*********************9999988888888877665.............5679****************9997626789******************************************************************973333366777888898544443667889999898986442389*******************98765 PP

  == domain 3    score: 165.4 bits;  conditional E-value: 7.4e-51
   TIGR01193  208 lqqvlsyikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalastilslfldlsilvivglvlvlqniklfllslvaiPv.yaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvi.....lwvGallvireklt..lGqlltfnallsyflnPleniinlqpklqaarvannrlnevylvdsefkekkkltel....enlngdievndvsysyGyg.sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenll.lgakenvsqeeikkavei.aeik.....ddieklplG....yqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenll.klkdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyaslih 707 
                  +  +  +++  ++++ g r s++i  + ++ +++ Pm+ff t  vG i+ rf+     id+   +++  ++   + v+ +lv+ +  +  f + ++ + + ya     f+ t+++l++    + + + + + e ++G+ ti++  se+  ++++++ +    +  + +  a +   a++  l  +l +++     lw  al     k +   G  +++ + +   ++ l+  + + + l a+ ++ +r+     v++e  ++ +++++      + g+i++++ s +y  g  +vl+ +++++ + +k+ +vG +G+Gkstl+  l++  + +sG+il++g + ++i  ++lr  i+ +Pq+P++fsG+i  nl  +g  ++ +  ++   v + + i      + +  l lG    ++ ++ e +s+ s+Gq+q l +aralls + ++i+de+t+ +d  t+ +i + +  ++ d t i +ahr++    sd i+v+d+Gk  e  + ++l+++ G +++l++
  MMETSP1061-20121228|5060_1  873 MNVIGIFLRLIFVMMAGLRASRKIYSNLLQVIMHAPMAFFDTTPVGRIINRFSLDMYTIDSQLMMTVRSYISTILNVVSALVVNTGVSPAFTIGIIPLLLfYAAQQRFFTMTYRELKRLDSVSRSPIYALLGETIDGVATIRAYDSEASLMRRMKNMLDAQQNAYYLLCVA-QCWLAIRLELVGTLVITLaclfpLWHYALHGADPKFAglAGLAISYALSI---TQSLNWSVRMASDLEASMISVERVRSYSEVPTEAPRDMDVDNTlpesWPSGGSIVFKEASLRYRPGlPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDpFGEFPDEEVSSVLTRVGLfTTITgststESLSSLGLGqvqsLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRsEFADATCITIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIAKGGMFRDLVQ 1393
                  444556788888999999***********************************8888888766666666777777777777777788889999998765427777888999999999988888888899999********************9998887766655555444.44455544333222222222234899999999999873345566666554...6788899**************************9988877654111145679*****999999766247*******************************************************************************95478888887777766655415554221113455565662222445666789****************************************9776533689*********************************************9986 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   1.8    0.0054      0.33     195     460 ..     164     429 ..     116     472 .. 0.77
   2 !   75.4   0.3   9.6e-24     6e-22     493     705 ..     528     743 ..     466     748 .. 0.79
   3 !  183.1   0.1   2.5e-56   1.6e-54     192     710 .]     859    1393 ..     818    1393 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0054
   TIGR03796 195 plllgllltallqvvltllqlallrrle..iklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeelee 460
                  ++l+l++ta   ++   l++++++  +   k+ + +   + ++ l l +    +R+ gei++ ++++++  + l+  l +  +++  + f + ++ +     +l ++a+  + + + + v+     ++++l++ + +   +  + l +++ +k  + e+ f+ r++ +  k l+   +   at l  +l +++  l   ++ +++++  l  +l + + ++  +l + +  p+  l ++++++ e    l+r++  l ++++e+  e
  MMETSP1061-20121228|5060_1 164 GFMLTLAVTASQLTMSFCLRHYFMKCYKfgLKIRTGVMVAVYEKALVLSAGERYSRSLGEITNLMSVDAQRLQDLTTYLHAIWFSFYQIAFSLFLLWQQLGPSTLAGLAIICVMIPITKKVATYIGGLQKKLMTSKDNRVDMNTEVLGAMKVVKLQAWEEPFMDRITDLREKELKDLLTYIYATCLSIMLWSCVPLLV--SLSTFAAYVYLGNDLDVATALTSVALFEILRFPLFMLPSVINRIVEAGVSLDRVKSFLLCEEHEHIGE 429
                 3455555555544444567877776554115666666778889999999999899***************************************99999999999999999999999*********************99*****************************99999988776655554444444444443..34456666667777888888888888888888888888888888888888888888777776666655 PP

  == domain 2    score: 75.4 bits;  conditional E-value: 9.6e-24
   TIGR03796 493 pliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnl..tlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR......g.c....tciivaHRLstiRd..cdeiivlerGkvverGtHeella.kegaY 705
                   ++ ++++ kpG+ vA+vGg GsGks +   + G  +  sG++ + gk             la+ +q  ++ ++tv+ n+  +  de + ee+  rA++  a++ ++  +p+g ++e+ e g  lsGGq+ R+ +ARa+ ++  i i+D+a sa+Da++ k++ e+   +      g c    ++i+ +  L  +    +d+iivl +G++ve+G+++el++ k++ +
  MMETSP1061-20121228|5060_1 528 LCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK-------------LAYFSQTPFIANATVKANIlfSHVDEPVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEECITKdllagtGnCfekrSVILATNALQHLNHprVDKIIVLREGRIVEQGSYKELADdKSSEF 743
                 4578899*********************999999999999999987775.............77788888888888888873345799**********************************************************************9977655443222111111224443345556667887764338********************98344455 PP

  == domain 3    score: 183.1 bits;  conditional E-value: 2.5e-56
   TIGR03796  192 wlrplllgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndk.vaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglr.vlegeltiGmlvafqsllasflepveklvgl.vselqeleadlerldDvlenpvdeeleeeeekaaeseek.ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeed.........lvrAakDAaihdvila....rpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR..gctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarLir 710 
                      +l +  l  l++v+  +l+l++++    + + ++ +++l+ i++ P+ ff+    g i +R +l+   + + l  ++ + +  ++ vv  ++v    ++ +++ +i l +  ++  ++ + +  +++r     ++ +++   +++  + t++A  +e+ +++r++ +     na   l va+ +l +  el+ +l  +l  ++  ++  l+g+     +     l+ s+   +++ ++  v    +lea +  ++ v ++++ +++  ++ + +++ ++     G++ +++ +  y +  + ++++++++l  G++v +vG  G+Gkst+   +  + e  sG+il+Dg + ++i  + l++ +a++ qd vlf+gt+r nl  + e  p+e+         l + +   + ++++ +    + + ++ ++ egg+n+s Gqrq l iARaL +  si+i+DEat+a+Da t+ +i++ +r      tci +aHR+ ti d+d i+v++ Gk  e  + e+l+ak+g++++L++
  MMETSP1061-20121228|5060_1  859 SQAYFLGIFGLINLMNVIGIFLRLIFVMMAGLRASRKIYSNLLQVIMHAPMAFFDTTPVGRIINRFSLDMYtIDSQLMMTVRSYISTILNVVSALVVNTGVSPAFTIGIIPLLLFYAAQQRFFTMTYRELKRLDSVSRSPIYALLGETIDGVATIRAYDSEASLMRRMKNMLDAQQNAYYLLCVAQCWLAIRLELVGTLVITLACLFPLWHyALHGAD--PKFAGLAGLAISYALSITQSLNWsVRMASDLEASMISVERVRSYSEVPTEAPRDMDVDNTLPEsWPSGGSIVFKEASLRYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDPFGE-FPDEEvssvltrvgLFTTITGSTSTESLSSlglgQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEfaDATCITIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIAKGGMFRDLVQ 1393
                  445566677788888899999**********************************************99751555555555555555555555566667788888888777777766666666666666655556677778888888999999****************9999999999999999988877666655554444444433331333332..23444455555665555544443034445677777777777777666655554444444433328899**********************************************999999**********************************************98854.44444000000001444444444444444411114567899****************************************************863379********************************************986 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.7       2.1   1.3e+02     220     475 ..     196     447 ..     165     468 .. 0.63
   2 !   94.8   0.0   1.4e-29     9e-28     482     690 ..     529     737 ..     486     742 .. 0.89
   3 ?    1.2   0.9      0.29        18     207     360 ..     879    1034 ..     862    1060 .. 0.57
   4 !  166.6   0.0   2.7e-51   1.7e-49     455     680 ..    1136    1373 ..    1092    1385 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2.1
   TIGR03375 220 vdlilsaklfervlglrlear.pasvGsfasqlr.efesvrdfltsatltalvDLpf..vllfllvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklpvereeekrllsreklkGeielknvsfkY 475
                 + + +  +++e++l l+  +r ++s G +++ +  + + ++d+ t    ++ + + f  + + l++++   gp  l  l+++ +++ ++  + + +  l ++ ++   ++  +  e l +++ +k+++ e+ ++ +  ++ ++  k  l     + l++ l ++v  lvs+    + +y+ + ++l + + +  v L      Pl +l +++ r+ +a ++l+++ +++  ++ ++ ++  l++   +G+++++ v+  Y
  MMETSP1061-20121228|5060_1 196 IRTGVMVAVYEKALVLSAGERySRSLGEITNLMSvDAQRLQDLTTY---LHAIWFSFyqIAFSLFLLWQQLGPSTLAGLAIICVMIPITKKVATYIGGLQKKLMTSKDNRVDMNTEVLGAMKVVKLQAWEEPFMDRITDLREKELKDLLTYIYATCLSIMLWSCVPLLVSLS--TFAAYVYLGNDLDVATALTSVALFEILRFPLFMLPSVINRIVEAGVSLDRVKSFLLCEEHEHIGEGDLDE---NGNVRMSTVTAYY 447
                 5555556677777777665552445666665554355566666543...344444441123345566666677777778888888888888889999999999999999999999999999999999988888888777766555444444444444444444444444333..4445555566666666666666666666788888888888888888888888777665554444444433...4666666665555 PP

  == domain 2    score: 94.8 bits;  conditional E-value: 1.4e-29
   TIGR03375 482 aLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgap..aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekller.....L.k...elladkTlvlvtHrtslLe..lvdriivldkGrivadGpkdevle 690
                  Lk ++++ kpGe va++G +GsGKs+ll+ +lg ++  +G+v +             + +++y +q + + ++t++ Ni +++    +++e+  ra+e   +++ ++  p+G  + ige+G  LSgGQ+  valaRa++++ +i ++D+  sa+D++  ++l+e+     L +   ++ +++ ++l+t   + L+   vd+iivl++Griv +G+ +e+ +
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEV-------------KGKLAYFSQTPFIANATVKANILFSHVdePVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEEcitkdLlAgtgNCFEKRSVILATNALQHLNhpRVDKIIVLREGRIVEQGSYKELAD 737
                 6999*************************************9965.............5699*******************98764479*******************************************************************998877665422112312111456699************8556****************9888765 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.29
   TIGR03375  207 llRsylldvagkkvdlilsaklfervlglrlea.rpasvGsfasqlr.efesvrdfltsatltalvDLpfvllfllvialiggplvlvpl..vavplvllvglllqkplsklaeeslre.saqk...nallveslegletikalnaesrlqkkWeqvvaala 360 
                  +lR  ++ +ag ++  ++ ++l++ +++  ++  + + vG +++++  +      + t  + + ++   ++  +l v+  +  +  + p+  + ++ +ll+  + q+ ++ + +e  r  s ++    all e+++g+ ti+a  +e+ l+++ ++++ a +
  MMETSP1061-20121228|5060_1  879 FLRLIFVMMAGLRASRKIYSNLLQVIMHAPMAFfDTTPVGRIINRFSlD------MYTIDSQLMMTVRSYISTILNVVSALVVNTGVSPAftIGIIPLLLFYAAQQRFFTMTYRELKRLdSVSRspiYALLGETIDGVATIRAYDSEASLMRRMKNMLDAQQ 1034
                  5666666666666666666666666666666642455566666655312......2222222222222222222222222222222222200222233333334444444444544443244442225999*********************9999887665 PP

  == domain 4    score: 166.6 bits;  conditional E-value: 2.7e-51
   TIGR03375  455 rllsreklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhp.............kGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGriv 680 
                  +l +     G+i +k+ s++Y+     +Lk + +++  G+kv+++Gr+G+GKstl+  ll+++e ++G++l+dg d+r+i  ++lr+ni+++pqd++Lf+Gt+r N+    + + dee+  +++++G+ + +  +              ++l+ q++e+G+++S GQrq++++aRall+  +i+++DE t+a+D+ +++++ + +++  ad T + ++Hr + +   d i+v+d+G+  
  MMETSP1061-20121228|5060_1 1136 TLPESWPSGGSIVFKEASLRYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDPFGE-FPDEEVSSVLTRVGLFTTITGSTsteslsslglgqvQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIMDSDFILVMDSGKAA 1373
                  4444555679*************************************************************************************************98877.78999*****9999876665432111122222222267899**********************************************************************************975 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   1.2    0.0015     0.096     206     466 ..     195     452 ..     160     464 .. 0.82
   2 !   83.1   0.3   5.6e-26   3.5e-24     467     675 ..     528     739 ..     523     748 .. 0.79
   3 !  162.8   2.9   4.2e-50   2.6e-48     195     683 ..     880    1393 ..     860    1396 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0015
   TIGR03797 206 avdaslqaavwdrLLrlpasfFreysagdLasramgvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrYekdgp 466
                 ++ + ++ av+++ L l+a    + s g++++ ++  +q  + l++ +    +s    +++l+ll +     +l++++++ v+i +t  ++++    ++kl++ + +   +  +++ +++ +++ + ee ++ +++    ++ k  l+   ++ l  +l + +p+l+s+  fa+ ++   ++ l++++ l+ ++ f ++   +  l + +  ++++    +r+k  l  e   +  + d +  +G+++++ vt  Ye+  +
  MMETSP1061-20121228|5060_1 195 KIRTGVMVAVYEKALVLSAGERYSRSLGEITNLMSVDAQRLQDLTTYLHAIWFSFYQIAFSLFLLWQQLGPSTLAGLAIICVMIPITKKVATYIGGLQKKLMTSKDNRVDMNTEVLGAMKVVKLQAWEEPFMDRITDLREKELKDLLTYIYATCLSIMLWSCVPLLVSLSTFAAYVY--LGNDLDVATALTSVALFEILRFPLFMLPSVINRIVEAGVSLDRVKSFLLCEEHEHIGEGDLD-ENGNVRMSTVTAYYESLKQ 452
                 556667889999999999998888999999876555556667888888888888888889999999999999********************************************************99999999887777777777777777777788999****9999999999..5999****************************************998876544333333333.3799999999998876554 PP

  == domain 2    score: 83.1 bits;  conditional E-value: 5.6e-26
   TIGR03797 467 lvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVses.l..eklkvt......Rivi.A.HRLSTirn..adrilvleeGrvveqGsyeeLlake 675
                 l L++++++ +pGe va+vG  GsGKS+ll  +Lg  +  sG+v   G+ l+ + ++         + n+ + ++ +++ +  ++++  ++ + a++  +l++D++ +P g  T i e g tlSGGQ+ R+ +Ara+ +   i ++D+A SA+D +  ++  e  +  + l+ t      R vi A   L  +++   d+i+vl eGr+veqGsy+eL+  +
  MMETSP1061-20121228|5060_1 528 LCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK-LAYFSQTP-------FIANATVKANILFSHV--DEPVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEEcItkDLLAGTgncfekRSVIlAtNALQHLNHprVDKIIVLREGRIVEQGSYKELADDK 739
                 689****************************************988885.44444332.......3455555555555554..567999999***************************************************************9888776541221234444333333444324245776664338********************9854 PP

  == domain 3    score: 162.8 bits;  conditional E-value: 4.2e-50
   TIGR03797  195 aqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasram.gvsqirrllsgatlkallssifall.nlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavl..pvltsavlfalaisllaaaklsl....gsflafntafgsflkavtslaetlievlavvplyerakPi.leaepEvdeekvdpgkL..sGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDik.........amPmg....lhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslek..lkvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelar 683 
                   + + v+    +++ ++ + +++ +++ p++fF +  +g + +r +  + +i  +l  + +++ +s+i+ ++  lv+   +s + ++  + l+l+ +a   + +++  + +r     ++ + +l+ + i+g++ +r   +e   + +  +    q++ ++    ++ +l++  + +   v+t a lf l  + l++a  ++    g  ++++ ++++ l+  +++a+ l + +  v  ++    +  ea  ++d +++ p++    G+i  ++ + rY++  p+vL+ + ++   G  v++vG  G+GKStl+  LL   + +sG++l DG+d +k+ ++++R ++ v+ Q+  l+sg+i +n+    ++  +e+ +++ ++gl   i+         ++ +g    l   + egg++ S GQrQ l+iAral +   i+++DEAT A+D  t a + + +      +t i iAHR+ Ti+++d ilv++ G+ +e  + e+L+ak+G+f +l++
  MMETSP1061-20121228|5060_1  880 LRLIFVMMAGLRASRKIYSNLLQVIMHAPMAFFDTTPVGRIINRFSlDMYTIDSQLMMT-VRSYISTILNVVsALVVNTGVSPAFTIGIIPLLLFYAAQQRFFTMTYRELKRLDSVSRSPIYALLGETIDGVATIRAYDSEASLMRRMKNMLDAQQNAYYLLCVAQCWLAIRLELVgtLVITLACLFPLWHYALHGADPKFaglaGLAISYALSITQSLNWSVRMASDLEASMISVERVRSYSEVpTEAPRDMDVDNTLPESWpsGGSIVFKEASLRYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDPFGEFPDEEVSSVLTRVGLFTTITgststeslsSLGLGqvqsLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSefADATCITIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIAKGGMFRDLVQ 1393
                  455556666667778888889999999*****************753899*****9765.5666666666551577777888888888888999999999999999999999999999************************99999999999999999988888888887766551156667778877777774444444000144455555555555555555555544444444444444441344456777888888753369********************************************************************************************************************977764222111111455543333566799******************************************9998885422789*********************************************97 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.22        14      82     341 ..     194     451 ..     167     472 .. 0.57
   2 !   95.3   0.0   1.2e-29   7.3e-28     346     514 ..     524     682 ..     482     706 .. 0.84
   3 !  148.2   0.2   1.1e-45   6.6e-44      84     529 ..     886    1354 ..     881    1355 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.22
   TIGR02868  82 lrslgelRvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsva.aalvlaaallvalvvaplvslraarsa..eqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafea....laalpaAaqqltrvraaaeRieevldakvevaeas..apaaeaaasekptlelrdls 341
                 l++ + + v+vYe+    ++  +   + G++ + ++ D   lqdl+       + A+      +a++ +l+++ ++   +a+l+++ v++p+ +  a+     +++l  ++ +  +  +++l +++  + +   e++++++ +  ++ ++  +      a   +++l+ +   +++    +   ++++ l+ ++     L++ a+fe+    l+ lp +++++ ++  +++R++  l  + +++ ++   ++++++   ++t   + l+
  MMETSP1061-20121228|5060_1 194 LKIRTGVMVAVYEKALVLSAGERYSRSLGEITNLMSVDAQRLQDLTT-----YLHAIWFSFYQIAFSLFLLWQqLGPSTLAGLAIICVMIPITKKVATYIGglQKKLMTSKDNRVDMNTEVLGAMKVVKLQAWEEPFMDRITDLREKELK--DLLTYIYATCLSIMLWSCVPLLVSLSTFAAYVYLGNDLDVAT----ALTSVALFEIlrfpLFMLPSVINRIVEAGVSLDRVKSFLLCEEHEHIGEgdLDENGNVRMSTVTAYYESLK 451
                 56667777888887666666666666788998888989999998865.....56777777777777777776526778888899998888887777765441134444555555566667777777777777777777777654333222..222222222222222222222222222222223333333221....23333333331111347888888888888888888876555533333330033333333344444444444 PP

  == domain 2    score: 95.3 bits;  conditional E-value: 1.2e-29
   TIGR02868 346 gaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpd..atdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledL 514
                  ++   lk+++++ +pGe vavvG  G+GKs Ll+ ++g l  l+G+v ++g               +++ q + + ++tv+ N+++ + d  +++e  ++a+e   L++ ++ Lp G  t++ge+g +lSGG++ R+alARa+ ++a++ ++D     +Da+++++l e+ 
  MMETSP1061-20121228|5060_1 524 SSNLlCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKG-------------KLAYFSQTPFIANATVKANILFSHVDepVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEEC 682
                 4444589********************************************9.............6799*******************977335899999******************************************************************998764 PP

  == domain 3    score: 148.2 bits;  conditional E-value: 1.1e-45
   TIGR02868   84 slgelRv..rvYerLar....aalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealga....altllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldak..vevaeasapaaeaaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwl.........raLpdG....ldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529 
                  +++ lR+  ++Y++L +    a  a+      G +++r++ D+ +++  l+ ++   ++ ++ +++a ++ + +s+ a  + ++ ll++ ++   ++ +  r+ ++    +rs ++a l ++++g+a+++++   +  ++++++  ++  +a      a+ + a     + +l++ la l  l+      ad + a+ a  + +  +L++++ l+     a  l+++  + eR+    + +   ++++ ++++  ++ +   ++++++ s +y  + + vlkg++++l+ G++v vvG++GaGKstL+  l+++++ ++G++++dg++  ++  +++r  ++v++qd+ lF+ t+r Nl    ++  dee++++L rvgL   +          +L  G    l+ ++ egg+ +S G+rq l++ARaLl+ a ++++DE t+ +Da+t +++ + +++  ++ t + ++hr
  MMETSP1061-20121228|5060_1  886 MMAGLRAsrKIYSNLLQvimhAPMAFFDTTPVGRIINRFSLDMYTIDSQLMMTVRSYISTILNVVSALVVNTGVSP-AFTIGIIPLLLFYAAQQRFFTMTYRELKRLDSVSRSPIYALLGETIDGVATIRAYDSEASLMRRMKNMLDAQQNAYYLLCVAQCWLAirleLVGTLVITLACLFPLWHYALHGADPKFAGLA-GLAISYALSITQSLNWSVRMASDLEASMISVERVRSYSEVPteAPRDMDVDNTLPESWPSGGSIVFKEASLRYRPGLPrVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLD-PFGEFPDEEVSSVLTRVGLFTTItgststeslSSLGLGqvqsLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHR 1354
                  5555554334676666633334455666668899********9999888887777777666655555555555555.55667788999999999999***********************************9999988887765555555554444444444400013445555555555555544444555554432.344557999999999999999*************9666655224555555555555555899**********9777666********************************************************************************8.57899**************766522222111134443433337889***************************************************************97 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   2.1e-33   1.3e-31     337     501 ..     529     682 ..     484     721 .. 0.83
   2 !  134.9   0.0   1.5e-41   9.2e-40     318     529 .]    1135    1367 ..    1103    1367 .. 0.80

  Alignments for each domain:
  == domain 1    score: 108.0 bits;  conditional E-value: 2.1e-33
   TIGR02857 337 alkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkd..aseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevleal 501
                  lk ++++ +pgelva+vG  G+GKs+ll+ +lg +++ +G+++v+g+             +a+ +Q+P++ ++tv++ni +++ d   +e++ ++a+e ++l++ ++ lp+g  teiGe+g  LSgGq+ R+aLAra +++a++ ++D   +++Da+ ++++ e+ 
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK-------------LAYFSQTPFIANATVKANILFSHVDepVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEEC 682
                 6899*****************************************999.............89******************887662267888******************************************************************99987653 PP

  == domain 2    score: 134.9 bits;  conditional E-value: 1.5e-41
   TIGR02857  318 ass........slelenvsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenir.larkdaseaevkealeragldelv.........kalp....qgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529 
                  ++         s+ +++ s++y +g   +lk+++++++ g++v++vG  GaGKstl+  ll++ve ++G+il++g + +++   ++r++ia +pQ P+lf+gt++ n+  ++  +  ++ev+ +l+r+gl + +         ++l+    q l+ ++ e+g++ S+Gqrq l +Arall+ a+++++DE ta++Da+t+a++++ +r+ +  +t + +aHr +++ + d i+v+
  MMETSP1061-20121228|5060_1 1135 NTLpeswpsggSIVFKEASLRYrPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDpFG--EFPDEEVSSVLTRVGLFTTItgststeslSSLGlgqvQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIMDSDFILVM 1367
                  21133456788***********99999*********************************************************************************9443..44555677777777765443111111111333311226689999*********************************************************************99999876 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.8   0.3   6.6e-19   4.1e-17     352     567 ..     531     747 ..     522     763 .. 0.74
   2 !  127.4   0.1   2.2e-39   1.4e-37     333     570 ..    1145    1395 ..     934    1397 .. 0.84

  Alignments for each domain:
  == domain 1    score: 59.8 bits;  conditional E-value: 6.6e-19
   TIGR01192 352 rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgreda.tdeevve.aakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvet......earvkdaid...alrknrttfiiahrlstvre..adlvlfldqgrliekgsfdeliqkd.grfakll 567
                 + + fe+k g+ va+vg  g+gk++l+n +       sg++ + g              +a   q   + n +++ ni + + d   dee ++ a ++ a +  +e    g  t +ge+g  lsgg++ r+a+ara+ ++a i ++d+a sa+d         e   kd +       ++r+ ++ +  l  + +   d ++ l +gr++e+gs++el++ +  +f ++l
  MMETSP1061-20121228|5060_1 531 KRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKG-------------KLAYFSQTPFIANATVKANILFSHVDEpVDEEKYQrAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVakhlfeECITKDLLAgtgNCFEKRSVILATNALQHLNHprVDKIIVLREGRIVEQGSYKELADDKsSEFSRFL 747
                 6799***********************987655555566655554.............57778888889999******9998664156666652667777777788888999******************************************8762222213344544431112234566666667788776433799******************975414444443 PP

  == domain 2    score: 127.4 bits;  conditional E-value: 2.2e-39
   TIGR01192  333 gavefrdisfefanss.qgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenir.lgr...edatd........eevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllras 570 
                  g++ f++ s  +     + ++ + +e   g  v +vg tgagk+tl+  l r+ + +sg+ilidg d   +    lr  ia + qd  l+  +ir n+  +g    e+ +           +  ++ + + s +   ++++ + +v e g+++s g+rq l iara+l  a i+++deat+a+d +t+ar+++ + +   + t + iahr+ t+ ++d++l +d g+  e    ++li k+g f  l++a+
  MMETSP1061-20121228|5060_1 1145 GSIVFKEASLRYRPGLpRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDpFGEfpdEEVSSvltrvglfTTITGSTSTESLSSLGLGQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIAKGGMFRDLVQAA 1395
                  566666666666444303445677788899*******************************************************************96445322133221111111112334456666667777889************************************************************************************************************99875 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2      0.42        26      73     200 ..     192     317 ..     163     339 .. 0.59
   2 !   84.0   0.4   2.8e-26   1.8e-24     332     540 ..     528     735 ..     513     738 .. 0.85
   3 !  102.8   0.0   5.7e-32   3.5e-30     330     542 ..    1160    1383 ..    1123    1384 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.42
   TIGR01842  73 igekldkalnkkifkaaieatlerkkkeslqalrDldqlrqFltgtgliaffDlPwlpiyllv..vfllhpylGllalvgavvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlk 200
                  g k+ + +   +++ a+  ++ +   +sl  +++l ++      + l++++ + w+  y +   +fll   lG  +l+g  +++++  +++++    ++  +++ +   ++ ++   n+ev+ a+ ++k
  MMETSP1061-20121228|5060_1 192 FGLKIRTGVMVAVYEKALVLSAGERYSRSLGEITNLMSVDAQ-RLQDLTTYLHAIWFSFYQIAfsLFLLWQQLGPSTLAGLAIICVMIPITKKVATY-IGGLQKKLMT--SKDNRVDMNTEVLGAMKVVK 317
                 334444444444444444444433333444444444444322.235699999******997752368888889******988887766555554433.3333332222..23345567888888887765 PP

  == domain 2    score: 84.0 bits;  conditional E-value: 2.8e-26
   TIGR01842 332 ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeni..aRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalak.alke.lka......rkitvvvithrpsllel..vdkilvlkdGalkafGereev 540
                   lk i+f+ k+Ge +a++G  gsGkssL   ++G     sG+v++ g             ++ Y+ q   + + tv++ni  + ++e +d+ek   a +       +  lp G  teige+G +LsgGq+ R+aLaRa+y +  + ++D+  + +D++  + l +  +++ l a      +k++v++ t+  + l+   vdki+vl++G++ + G+ +e+
  MMETSP1061-20121228|5060_1 528 LCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKG-------------KLAYFSQTPFIANATVKANIlfSHVDEPVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEeCITKdLLAgtgncfEKRSVILATNALQHLNHprVDKIIVLREGRIVEQGSYKEL 735
                 5799****************************************9987.............467999999999*******976799*********999997666555578***********************************************99877665413332122122222268899*****999998545************999987775 PP

  == domain 3    score: 102.8 bits;  conditional E-value: 5.7e-32
   TIGR01842  330 kkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaakl.........agvhelilrlpkG....YdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542 
                    ++lkg++++l  G+ ++++G  g+Gks+L+  l+ +++  sG++ +Dg+d ++    +l  +i  +Pqd  Lf+Gt+  n+  f+e + +e+v    +          +   e + +l  G     + ++ egG++ s Gqrq + +aRal     +v++De  a +D++ ++ + k +     + +t ++i+hr++ +   d ilv++ G+ ++f + e++++
  MMETSP1061-20121228|5060_1 1160 LPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDPFGE-FPDEEVSSVLTRvglfttitgSTSTESLSSLGLGqvqsLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMR-SEFADATCITIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIA 1383
                  4479***********************************************************************************9.666665544333000111111334555666655522226788999**************************************9988887665.578899*****************************99988876 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   3.5e-08   2.2e-06      16      64 ..     528     576 ..     521     601 .. 0.87
   2 !   33.7   0.1   8.3e-11   5.1e-09      90     237 ..     585     739 ..     572     744 .. 0.65
   3 !   67.8   0.0   3.3e-21     2e-19      15     209 ..    1161    1358 ..    1147    1384 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 3.5e-08
   TIGR02315  16 qalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegk 64 
                   lk +n+e k+Gelvav+G  G+Gks ll  i +  +  sg+++++gk
  MMETSP1061-20121228|5060_1 528 LCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK 576
                 579****************************999888889999988875 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 8.3e-11
   TIGR02315  90 lierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdl..lkri.....nkekgitvivnlHqvd.lakkyadrivglkageivfdgasselddev 237
                  i++ tv +n+L + +      +++ +  +    ++ +e+L   + +    ++  +LsGGq+ Rva+aRa+  ++++ ++D+ ++++D + +k++++    k++     n  ++ +vi+    ++ l +   d+i+ l++g+iv +g+ +el d++
  MMETSP1061-20121228|5060_1 585 FIANATVKANILFSHVDEPVDEEKYQRAIECCALKHDMEMLPAGDRT-EIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEEciTKDLlagtgNCFEKRSVILATNALQhLNHPRVDKIIVLREGRIVEQGSYKELADDK 739
                 56666666666666665543333333333333333333333322222.22345668*************************************998752246652222222233456666666642667789*****************9999886 PP

  == domain 3    score: 67.8 bits;  conditional E-value: 3.3e-21
   TIGR02315   15 kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvL.sgrlgakst..lksllglfseedkekAlelLervg......laelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdla 209 
                   ++lk +++e+ +G  v+v+G+ GaGkstl+ s+ r+ve +sg+il++g++ +k+    l klr++i++i q+  l +  t+ +n+   g +  ++   + + +glf++   ++  e+L+ +g      l+++  +  ++ s Gq+q + iaRal+  +++++ DE +a++D  +  ++ +++++     + t+i   H+++  
  MMETSP1061-20121228|5060_1 1161 PRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKI---GLTKLRSNIAVIPQDPVLFSG-TIRSNLDpFGEFPDEEVssVLTRVGLFTTITGSTSTESLSSLGlgqvqsLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSE--FADATCITIAHRINTI 1358
                  4789**********************************************98755...6888999*******9877653.344443213444433320033334555555555555555555511111255666677899***************************************9999963..3445555555666554 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   0.00013    0.0081      16      67 ..     529     581 ..     522     596 .. 0.86
   2 !   34.9   0.0   3.4e-11   2.1e-09     130     232 ..     625     737 ..     580     748 .. 0.71
   3 !   74.6   0.1   2.7e-23   1.7e-21      15     233 ..    1162    1384 ..    1148    1388 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 0.00013
   TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrs.lnrlndlveevrieGkvlleg 67 
                  lk +n+e k  +++a++G  G+Gks+ll   l  l+ l  +v+++Gk+ +  
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGiLGELRVLSGNVEVKGKLAYFS 581
                 799**************************963689999999999999998755 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 3.4e-11
   TIGR00972 130 lwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiateki.eeliq.eLk.......kkytivivthnmqqaar.vsdktaffleGelveegeteqife 232
                 l    ++++ +++++LsGGq+ r+++ara+  e ++ ++D+  sa+D+  ++++ ee i+ +L        +k  +++ t  +q  ++   dk++++ eG++ve+g+ +++  
  MMETSP1061-20121228|5060_1 625 LPAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLfEECITkDLLagtgncfEKRSVILATNALQHLNHpRVDKIIVLREGRIVEQGSYKELAD 737
                 455556778899************************************988876466664244212222226789********98765257***************9998765 PP

  == domain 3    score: 74.6 bits;  conditional E-value: 2.7e-23
   TIGR00972   15 ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnva.yg....lrlkgikdkkel.....deiveesLkkaal..wdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233 
                  ++lk +++e+++ + ++++G +G+Gkstl+ sl r+ +l      +Gk+l++g d   +k+  ++lr+++ ++ q p  f+ +i  n+  +g     +++ + ++  l      ++  esL++ +l   + ++d++++ + + s Gq+q l+iaral     ++++De t+a+D+ + ++i++++++   + t + + h ++  +  sd + ++ +G+  e +++e+++ k
  MMETSP1061-20121228|5060_1 1162 RVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELD-----SGKILIDGYDT--RKIGLTKLRSNIAVIPQDPVLFSGTIRSNLDpFGefpdEEVSSVLTRVGLfttitGSTSTESLSSLGLgqVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIM-DSDFILVMDSGKAAEFDKPEKLIAK 1384
                  689***********************************99.....9*******996..56899************************9646643234556666666551111134456788888774457899********************************************************************8765.59******************99865 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   1.4     6e-14   3.8e-12      16     224 ..     529     740 ..     522     748 .. 0.74
   2 !   65.6   0.1   1.5e-20   9.2e-19       6     221 ..    1153    1383 ..    1148    1395 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 6e-14
   TIGR03864  16 alddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlgl.....aera..eekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveev..relvre.....eglsvLWathlvdevea..edrlvvlhkGkvlaqGaaaelaaead 224
                  l+ ++++ ++ge+va++G  G+Gks L++ + + ++  +g+++v G+                f q+ +  + +v++n+ +    + + +++ ++ ie    + ++      +r+   ek  +L+GG++ rv +ara+ he ++ ++D+a   +D++  ++l ee   ++l +      e+ sv+ at  ++ +++   d+++vl +G+++ qG+ +ela +++
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAY-------------FSQTPFIANATVKANILFSHVDEPVDEEKYQRAIECCALKHDMemlpaGDRTeiGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEECitKDLLAGtgncfEKRSVILATNALQHLNHprVDKIIVLREGRIVEQGSYKELADDKS 740
                 6899*************************9999999999********8655.............444445555555555555554455555555544443333322211111233311467789**********************************999998764225666551112244579********9986336********************98765 PP

  == domain 2    score: 65.6 bits;  conditional E-value: 1.5e-20
   TIGR03864    6 glsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealar.lGvvfqqstlDldlsveqnlryhaaL...........hGlsraeaeerieealarlglae..raeekvre....LnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaa 221 
                  +l+++ g  r+l+++++++++g+ v ++G  GaGkstL+  l r++e ++g+i + G+d r+   + l++ + v+ q++ l    +++ nl  + +             Gl  + + +  +e l+ lgl +    +++vre     + G+r+ + iarall   +++++Deat+ +D+++ a++++ +r+  ++   ++    h ++ + ++d ++v+++Gk +   ++++l a
  MMETSP1061-20121228|5060_1 1153 SLRYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSnIAVIPQDPVL-FSGTIRSNLDPFGEFpdeevssvltrVGLFTTITGSTSTESLSSLGLGQvqSLNDQVREggsnFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFAD-ATCI-TIAHRINTIMDSDFILVMDSGKAAEFDKPEKLIA 1383
                  577888999*****************************************************9999998627777777666.667899999887664221111111223555555666667777777775411345666643333899*****************************************99944.4444.567******************9987777777665 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.6   3.6e-17   2.2e-15      13     227 ..     527     744 ..     519     752 .. 0.75
   2 !   54.4   0.2   4.3e-17   2.7e-15      11     219 ..    1159    1382 ..    1147    1388 .. 0.78

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 3.6e-17
   TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkel......rawlrklhdevkvttvfvthdqeeale..vadrivvlekGkieqvgsaeevydepatafv 227
                 + +l+++++e k G+lva++G  GsGks+ll  i G  +  sG++ ++G+ +   ++         +   lf h+   + +      r ++  + k+   e+l   + +++g++    lsGGq+ rvalara+  e ++ ++d+ ++a+da+v k+l      +  l    +  +  +v+++ +  + l+    d+i+vl++G+i + gs +e+ d+ +++f 
  MMETSP1061-20121228|5060_1 527 LLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAYFSQTPF-IANATVKANILFSHV--DEPVDEEKYQRAIECCALKHD-MEMLPAGDRTEIGEK-GITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLfeecitKDLLAGTGNCFEKRSVILATNALQHLNhpRVDKIIVLREGRIVEQGSYKELADDKSSEFS 744
                 5679*********************************************9775443332.223334555666663..444444433334444444443.355666677777776.568*************************************994322222344445566777888877766555542268**********************9999984 PP

  == domain 2    score: 54.4 bits;  conditional E-value: 4.3e-17
   TIGR00968   11 GdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrd..reiGfvfqhyalfkhltvrdnia.fGl....eir.........kkdkakikakveel..lelvqleklgdry...psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevy 219 
                  G  ++l+ +d+e++ Gs v+++G +G+Gkstl+  +  + + dsG+il++G d+ ++ + +   +i  + q+  lf   t+r n+  fG     e+             + +     e l  l l q++ l+d+     s++s Gqrq + +aral     ++++de  +a+da     +++ +r      + t++ ++h  +  ++ +d i v++ Gk  + + +e++ 
  MMETSP1061-20121228|5060_1 1159 GLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKlrSNIAVIPQDPVLFSG-TIRSNLDpFGEfpdeEVSsvltrvglfT--TITGSTSTESLssLGLGQVQSLNDQVregGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFA--DATCITIAHRINTIMD-SDFILVMDSGKAAEFDKPEKLI 1382
                  666899*************************************************98765422689**********86.9999995477422223334444333221..222222233332245667777777652225899****************************************9998655..5788999**9999998.79************99999876 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.6e-06   0.00016      11      68 ..     525     582 ..     518     601 .. 0.88
   2 !   30.7   0.0   5.9e-10   3.7e-08     142     243 ..     635     744 ..     599     752 .. 0.75
   3 !   56.6   0.0   7.3e-18   4.5e-16      11     236 ..    1159    1383 ..    1147    1390 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.6e-06
   TIGR03005  11 geltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmk 68 
                  +l +l+ +++e ++Ge va++G  GsGks++l  ++   ++  G+++v+g+  y  +
  MMETSP1061-20121228|5060_1 525 SNLLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAYFSQ 582
                 6899*****************************97777778889*****999998766 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 5.9e-10
   TIGR03005 142 alpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevln..vlrrlaset.....dltmllvthemg.farefadrvlffdkGkiveeGkpdeifrkpkeert 243
                 +    lsGGqk rva+ara+  +  + + d++ sa+d ++ + +++  + ++l + t     + +++l t  ++ + +   d+++ +  G+ive+G  +e+ ++   e +
  MMETSP1061-20121228|5060_1 635 EKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEecITKDLLAGTgncfeKRSVILATNALQhLNHPRVDKIIVLREGRIVEQGSYKELADDKSSEFS 744
                 45578********************************9988777643244566443311222557788888876268999******************999877666654 PP

  == domain 3    score: 56.6 bits;  conditional E-value: 7.3e-18
   TIGR03005   11 geltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkg....rkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaek.ravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifr 236 
                  g  +vl+gl++e+ +G kv ++G +G+Gkst++  l+ + ++d G+i ++g    ++       +  ++p d        + i   +  f  fp + v + +t   + +     + +e+  ++ l ++  l d+  +  +++s Gq+q + iaral     ++++de+t+a+d +    + +v+r   +  d t + ++h+++   + +d +l +d Gk +e  kp+++  
  MMETSP1061-20121228|5060_1 1159 GLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLtklrSNIAVIPQD---PVLFSGTIRSNLDPFGEFPDEEVSSVLTRVGLFTTITGSTSTESlSSLGLGQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRS--EFADATCITIAHRINTIMD-SDFILVMDSGKAAEFDKPEKLIA 1383
                  4568**********************************************9776554320000233344444...44566778888899*******999999999988776666666552578999999*******************************************************96..456889999******9998.8******************9875 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.5   1.5e-12   9.3e-11       7     168 ..     529     680 ..     524     702 .. 0.80
   2 !   66.8   0.7   5.9e-21   3.6e-19       5     183 ..    1161    1352 ..    1157    1358 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 1.5e-12
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrk.kvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlle 168
                  lk +n++ + ge +a++G  G+Gks ll+ + G lr  sG+v ++G+   +s+  +++  + k ++++           vde v        ++   +++   e l a d +++ e+ + +lsgG+k rva+a av  ++d+ ++d+  + +d++ a++l e
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAYFSQTPFIANATvKANILFSH---------VDEPVDEEKYQRAIECCALKHD-MEMLPAGDRTEIGEKGI-TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFE 680
                 6999********************************************99999998876543144444555.........5555544444444444444333.46788888888888876.79*******************************998887754 PP

  == domain 2    score: 66.8 bits;  conditional E-value: 5.9e-21
   TIGR01166    5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadv...........dedvafgplnlGlseaeverrvrealaavdi...sgleerpt...hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis 183 
                  ++vlkgl++++ rg++++++G+ GaGkstl+  l  ++   sGk+l+dG ++   + gl++lr ++a++ qdp   lf+ ++           de+v+  +  +Gl      +   e+l+ +++   + l+++     + +s G+++ + ia a+   + ++++de ta +d++   ++ +++r   ++ + + i+
  MMETSP1061-20121228|5060_1 1161 PRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDT--RKIGLTKLRSNIAVIPQDP--VLFSGTIrsnldpfgefpDEEVSSVLTRVGLFTTITGSTSTESLSSLGLgqvQSLNDQVReggSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIA 1352
                  79***********************************************865..699**************99..5888877222222222224678888999****9999999******99862225556665422268*******************************************9887777766664 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   2.9e-08   1.8e-06      13      64 ..     525     576 ..     520     586 .. 0.93
   2 !   21.2   0.0   6.7e-07   4.1e-05      91     178 ..     586     680 ..     577     725 .. 0.65
   3 !   58.1   0.2   3.2e-18     2e-16       2     195 ..    1147    1354 ..    1146    1370 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.9e-08
   TIGR02673  13 agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevage 64 
                 ++  +Lk+++++ ++ge++ ++G  G+Gk++ll+ +lg ++  +G+vev+g+
  MMETSP1061-20121228|5060_1 525 SNLLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK 576
                 56789*********************************************97 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 6.7e-07
   TIGR02673  91 lkdrtvlenvalalevrgkkeeeiqkrveev.....lelvgledkak..alpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserild 178
                 + + tv  n+ ++   +  +ee++q+ +e       +e++   d+++  ++  +lsgG + Rva+aRa+ ++ ++ + D+    +D+++++++++
  MMETSP1061-20121228|5060_1 586 IANATVKANILFSHVDEPVDEEKYQRAIECCalkhdMEMLPAGDRTEigEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFE 680
                 667777777777766666777777777654411111333333455542256789***********************************999875 PP

  == domain 3    score: 58.1 bits;  conditional E-value: 3.2e-18
   TIGR02673    2 ielekvskeyaag.veaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvl...........envalalevrgkkeeeiqkrveevlelvgl......edkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivath 195 
                  i +++ s++y  g  ++Lk +++++ +g+ + ++G+ GaGk+tl+  ll + + ++G++ ++g d++++    l++lR +i+v+ qD  l++  t+            e v  +l+  g  ++ + ++ +e l+ +gl      +d++++  +++s G +q   iaRa+++  ++++ De t  +D+++ +ri +++++  +  t + +a  
  MMETSP1061-20121228|5060_1 1147 IVFKEASLRYRPGlPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKI---GLTKLRSNIAVIPQDPVLFSG-TIRsnldpfgefpdEEVSSVLTRVGLFTTITGSTSTESLSSLGLgqvqslNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHR 1354
                  56888899998551689**********************************************998665...7999***********988754.333011122222335677778777777777788888888887752222226788888899*******************************************998888777777654 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.3   2.8e-13   1.8e-11      15     224 ..     529     740 ..     523     749 .. 0.73
   2 !   55.0   0.2   2.7e-17   1.7e-15      12     214 ..    1160    1376 ..    1150    1385 .. 0.75

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 2.8e-13
   TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk........ekkipeeiyelFPvlkeml.kRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikei.ekvike.lake.....kdlaillveqvldfa.leladrylvlerGevvaegekeeldeekv 224
                  l+ +++e + ge+vav+G  g Gk++ll  ++g l+v sG++e++g+              +ay +q    +++ tv+ n+  +    + +        e    ++ +e+ P+ +  +   +g  LsGGq+  +a+aRa+  e  + ++D+    +   + k++ e+ i++ l +      ++ +++l  + l+       d+++vl +G++v++g+ +el ++k 
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK--------------LAYFSQTP-FIANATVKANILFSHVDEPVDeekyqraiECCALKHDMEMLPAGDRTEiGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLfEECITKdLLAGtgncfEKRSVILATNALQHLnHPRVDKIIVLREGRIVEQGSYKELADDKS 740
                 5899*****************************************998..............45555543.3455556666555443333221122001122334566789999876652678889************************************9974556643354431222245689999888876515679****************999877654 PP

  == domain 2    score: 55.0 bits;  conditional E-value: 2.7e-17
   TIGR03410   12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk...................ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaeg 214 
                    +vl+++++e+++g+ v v+Gr g+Gk+tl+ +l+ +++  sG+i ++g d +k    ++ ++ ia +pq   +f+  t++ nl    e  +++                   ++++    +     l++  +  g + s Gq+q l iaRaL++   ++++De t  +     + i+kv+++  +  d + + + + ++  ++ +d +lv++ G+  + +
  MMETSP1061-20121228|5060_1 1160 LPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKI-GLTKLRSNIAVIPQDPVLFSG-TIRSNLDPFGEFPDEEvssvltrvglfttitgstsTESLSSLGLGQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRS--EFADATCITIAHRINTIMD-SDFILVMDSGKAAEFD 1376
                  5689************************************************8776.67889*********9988875.888888643332222212222223333333311111222222233344455555445558*****************************************9986..4457788888999999999.9999*****9987665 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.1   4.7e-08   2.9e-06      14      65 ..     525     576 ..     519     588 .. 0.91
   2 !   17.6   0.0   8.6e-06   0.00054     136     215 ..     637     725 ..     612     726 .. 0.74
   3 !   60.1   0.2   8.9e-19   5.5e-17       2     203 ..    1147    1360 ..    1146    1371 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 4.7e-08
   TIGR00960  14 aaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgq 65 
                 ++ l l+ ++++ + Gelv +vG  G+Gks+ll+ ilg  +  +G++ v+g+
  MMETSP1061-20121228|5060_1 525 SNLLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK 576
                 566789*****************************************99885 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 8.6e-06
   TIGR00960 136 PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdile.lleevnraGt.......tvlvathde.nlveskrkrvltlskGk 215
                  ++lsgG++ rva+arav ++  + + d+  + +d +++++++e  + +   aGt        v++at +  +l + +  ++++l++G+
  MMETSP1061-20121228|5060_1 637 GITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEeCITKDLLAGTgncfekrSVILATNALqHLNHPRVDKIIVLREGR 725
                 679*************************************9997322222223332222223588888775144455667788888876 PP

  == domain 3    score: 60.1 bits;  conditional E-value: 8.9e-19
   TIGR00960    2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsd..rtvy........dnvalalriiGvkgreieervsaalekvGl......kdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlves 203 
                  i f++ s +y+ +    l+++ +++++G+ v +vG +GaGkstl+  +l i +  +Gki++ g+d  k     + +lr +i ++ qd  l+s   r+ +        ++v   l  +G  +  +    +++l  +Gl      +d+ ++   ++s G++q + iara+++  ++++ de t+ +d ++   i +++++     t + + +h +n + +
  MMETSP1061-20121228|5060_1 1147 IVFKEASLRYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRK---IGLTKLRSNIAVIPQDPVLFSGtiRSNLdpfgefpdEEVSSVLTRVGLFTTITGSTSTESLSSLGLgqvqslNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITI-AHRINTIMD 1360
                  77999***********************************************************9755...56889***********9887642233331222222246888899999999988888999998888722222155666777899*****************************************9876655555555.555554443 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   1.4e-07   8.5e-06      18      67 ..     527     576 ..     520     590 .. 0.86
   2 !   20.2   0.0   1.2e-06   7.5e-05     134     219 ..     632     726 ..     610     728 .. 0.72
   3 !   24.8   0.0   4.5e-08   2.8e-06      19      73 ..    1162    1216 ..    1150    1224 .. 0.91
   4 !   29.5   0.0   1.6e-09     1e-07     129     218 ..    1284    1371 ..    1255    1374 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.4e-07
   TIGR02211  18 ievlkgvsleiekgelvaivGssGsGkstllh.llggldkptsGevllkGk 67 
                 +  lk +++e + gelva+vG  GsGks ll  +lg l +  sG+v++kGk
  MMETSP1061-20121228|5060_1 527 LLCLKRINFECKPGELVAVVGGVGSGKSSLLNgILGEL-RVLSGNVEVKGK 576
                 5679***************************8466766.5678******97 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.2e-06
   TIGR02211 134 rinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkife..lllel.....nkekntallvvthdlelak..kldrvlelkdgkl 219
                  i +k   lsGG++ rva+ara+  + ++ + d+  + +d++ ak++fe  + ++l     n  ++ +++++t  l+  +  ++d+ + l++g++
  MMETSP1061-20121228|5060_1 632 EIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEecITKDLlagtgNCFEKRSVILATNALQHLNhpRVDKIIVLREGRI 726
                 56678889****************************************73323333222224445566666666655443235666666666665 PP

  == domain 3    score: 24.8 bits;  conditional E-value: 4.5e-08
   TIGR02211   19 evlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelskls 73  
                  +vlkg+++e+ +g  v++vG +G+Gkstl+  l  + +  sG++l++G + +k+ 
  MMETSP1061-20121228|5060_1 1162 RVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIG 1216
                  79*****************************99999999*********9998875 PP

  == domain 4    score: 29.5 bits;  conditional E-value: 1.6e-09
   TIGR02211  129 vglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgk 218 
                    l++++ +  s++s G+rq   iaral++  ++v+ de t+ +d++t  +i ++++   +  + + + ++h ++ +   d  l +  gk
  MMETSP1061-20121228|5060_1 1284 QSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRS--EFADATCITIAHRINTIMDSDFILVMDSGK 1371
                  469999************************************************9985..334556678889999999999999988886 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.1   3.9e-12   2.4e-10      13     174 ..     529     679 ..     522     704 .. 0.77
   2 !   49.0   0.1   1.8e-15   1.1e-13      12     194 ..    1162    1355 ..    1153    1367 .. 0.72

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 3.9e-12
   TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLn.ilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlek..vgl.....ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevl 174
                  lk ++++ + Gelva+vG  GsGKs lLn ilg l    sg+v ++gk                  +y F +   + n tv+ n+  + + +   +++ +++++ +  k  +++     ++++ +k  +lsgG+k Rvalar++ +e+++ + D+  +++D++  ++++
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNgILGELRVL-SGNVEVKGKL-----------------AY-FSQTPFIANATVKANILFSHVDEPVDEEKYQRAIECCALKhdMEMlpagdRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLF 679
                 6899**************************667777544.5777777665.................66.444577888888888888877777766666655554443301333221223455677889*******************************998877765 PP

  == domain 2    score: 49.0 bits;  conditional E-value: 1.8e-15
   TIGR03608   12 eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenle................lalklkkkskkekekkkkevlekvg.lekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdp 194 
                  ++lk l++++ +G+ v +vG+ G+GKstl+  l ++ + dsgk++++g +++k+  +k    lr++++ + q+  L  + t+++nl+                ++l ++ +  +++e++    l +v+ l+ + ++   ++s G++q + +ar+ll  +++++ DE t+++D+++ + + +++++   + +  i + H  
  MMETSP1061-20121228|5060_1 1162 RVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTK----LRSNIAVIPQDPVLF-SGTIRSNLDpfgefpdeevssvltrVGLFTTITGSTSTESLSSLGLGQVQsLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADAT-CITIAHRI 1355
                  6899**********************************************77665443....566666666665554.34555555422222222211111125555555555555555555555554235555666688***************************************999988766555.45555654 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.2     5e-17   3.1e-15      23     239 ..     529     746 ..     509     753 .. 0.74
   2 !   41.3   0.5   3.3e-13   2.1e-11       7     228 ..    1145    1382 ..    1138    1387 .. 0.75

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 5e-17
   TIGR03258  23 vlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlt.hlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveel..kalh....relpeltvlyvthd.rdealvladkillmkeGslialGetralydapadrfvaey 239
                  l+ + +e ++Gel+a++G  GsGk++ll  + G ++   G++ v ++       p+  n    v+   lf h+   e v    + ++  +    +   + l   + ++ ++     lsGGq+ rvalara+  + d+ ++d+ lsa+da++ + + ee   k l     + + + +v+  t   ++      dki +++eG+++++G  ++l d  +  f  ++
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAYfSQTPFIANA--TVKANILFSHVD--EPVDEE-KYQRAIECCALKHDMEMLPAGDRTEIGE-KGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEECitKDLLagtgNCFEKRSVILATNAlQHLNHPRVDKIIVLREGRIVEQGSYKELADDKSSEFS-RF 746
                 689999***************************************9875441456777765..467779***964..555432.2333333333333334444444444443.35689**********************************99999985223343111144455566666665133445679*********************99998884.55 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 3.3e-13
   TIGR03258    7 sGvvleslrvay..garvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlp..pykrnlallvqnyalfphlkveenvafGlrarkqskaliae..........rvadalklvqls......daaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetraly 228 
                  + +v+++ +++y  g   vl+ l +e+  G  + ++G++G+Gk+tl+  +   v+ d G++l+ + d  ++     + n+a++ q+  lf      +   fG       ++ +++            +++l  ++l+      d   +  +++s Gq+q + +aral     ++++de  +a+da+  a +++    +  e+ + t + ++h r ++++ +d il+m  G+ +++ ++++l 
  MMETSP1061-20121228|5060_1 1145 GSIVFKEASLRYrpGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGltKLRSNIAVIPQDPVLFSGTIRSNLDPFGEFPDEEVSSVLTRvglfttitgsTSTESLSSLGLGqvqslnDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQK---VMRSEFADATCITIAH-RINTIMDSDFILVMDSGKAAEFDKPEKLI 1382
                  446666666666114567************************************************9988651155689*********9986444333457755544444333321111111111345666655554111111666677788999*******************************9999875...55679999******99.6788999*************999998875 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   1.1   9.4e-13   5.8e-11       8     262 ..     529     785 ..     524     814 .. 0.70
   2 !   49.0   0.9   1.6e-15   9.8e-14       7     218 ..    1162    1382 ..    1157    1386 .. 0.75

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 9.4e-13
   TIGR01186   8 gvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealkl.vdleey....ed...ryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdel..vklqkk.....lqktivfithdldealr.lgdrivilkaGeivqvGtPdeilrnPaneyve..efiekvdlsqvl...dveriakraetvlitktadkglr 262
                 +++ +++e + Ge++ ++G  GsGks+l+  +              Ge  +   ++e+    + k+a+ + +  ++   t++ ni ++     +de e+ ++a e   l  d+e      +    +    lsGG++ rv lara+  e d+ ++d+a+sa+d  + ++l +e   ++l +       ++++++ t  l    +   d+i++l++G iv  G+  e+  + + e+ +    ie+  +  ++   ++e+i+   +++l +++a    +
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGIL-------------GELRVLSGNVEV----KGKLAY-FSQTPFIANATVKANILFSHVDEPVDE-EKYQRAIECCALkHDMEMLpagdRTeigEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEECitKDLLAGtgncfEKRSVILATNALQHLNHpRVDKIIVLREGRIVEQGSYKELADDKSSEFSRflAVIEETGVKPSMtenTIEDIEDEIPETLSDIAASIRKS 785
                 568899999999999999999999998654333.............332333334555....557777.556788999999999999876666655.566788886443134443311112211123446*****************************************97224565431222246889999999987544257****************************983345777777666644567777777777777776655554 PP

  == domain 2    score: 49.0 bits;  conditional E-value: 1.6e-15
   TIGR01186    7 lgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildni...........slglellkideqerkekalealklvdl...eeyedry...PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeil 218 
                    ++ +d+e+  G  + ++G +G+Gkstl+  l r++e  +GkilidG d  +i  ++l    r  ia++ q+  lf   ti  n+           s +l   ++        + e+l  ++l   +  +d+      ++s G++q + +aral     +++mdea +a+d  +   +q+ +    +  + t + i+h ++  +  +d i ++ +G+      P++++
  MMETSP1061-20121228|5060_1 1162 RVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKL----RSNIAVIPQDPVLFS-GTIRSNLdpfgefpdeevSSVLTRVGLFTTITGSTSTESLSSLGLgqvQSLNDQVregGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRS--EFADATCITIAHRINTIMD-SDFILVMDSGKAAEFDKPEKLI 1382
                  556788999999***********************************************....888998888877775.466666521111111100333333344444444455555554444222444454411167899*******************************999999987764..566789********87665.9*********999999998765 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.1      0.01      0.63       7      54 ..     528     575 ..     524     578 .. 0.91
   2 !   27.7   0.2   5.2e-09   3.3e-07     124     258 ..     639     778 ..     614     810 .. 0.67
   3 !   59.9   0.9   8.2e-19   5.1e-17       9     213 ..    1164    1383 ..    1159    1398 .. 0.80

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.01
   TIGR01188   7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaG 54 
                   ++ +n++ + ge+++++G  G GK+ +++ + + l+  sG++ v+G
  MMETSP1061-20121228|5060_1 528 LCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKG 575
                 57899*************************999999999999999988 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 5.2e-09
   TIGR01188 124 tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwd.liee.l....kk..egvtilltthyleeadk.ladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkkevsllaaelteslleleavevdsdkv 258
                 t+sgG++ r+ la+++ ++ ++  +D+  + +D++ ++++ +  i++ l     +  e+ +++l+t+ l+  ++   d+++++++G+i+ +++ +eL +   +e+ +     i+e  ++ s+   ++++ +    +++ +   +
  MMETSP1061-20121228|5060_1 639 TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEeCITKdLlagtGNcfEKRSVILATNALQHLNHpRVDKIIVLREGRIVEQGSYKELADDKSSEFSR-FLAVIEETGVKPSMTENTIEDIE---DEIPETLSDI 778
                 79*********************************99998752343322111122224789**********997469*********************966666644.33333333333333333332222...2222222222 PP

  == domain 3    score: 59.9 bits;  conditional E-value: 8.2e-19
   TIGR01188    9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepd.evRrsigvvpqkasvdedLtarenlellgel...........yglpkkeaeeraeellelvelkeaa..dkkvk....tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKe 213 
                  ++g+++++++g+ +g++G  GAGK+t++  L  +++ dsG+  + GyD  +    ++R +i+v+pq+  + +  t r nl  +ge+            gl  +++ + ++e l  + l + +  + +v+    ++s G+r+ l +a++l++  +++ +DE t  +D+ t + i +++++ + ++ t +  +h ++ + + +d + ++d Gk + +d pe+L +
  MMETSP1061-20121228|5060_1 1164 LKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLtKLRSNIAVIPQDPVLFSG-TIRSNLDPFGEFpdeevssvltrVGLFTTITGSTSTESLSSLGLGQVQslNDQVReggsNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRS-EFADATCITIAHRINTI-MDSDFILVMDSGKAAEFDKPEKLIA 1383
                  799*************************99******************99876449**********9987654.666666666665222222222225677777778888888887776543223444322228***************************************987766.55688999999999987.569******************9965 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.1     7e-14   4.4e-12       2     201 ..     546     747 ..     545     771 .. 0.73
   2 !   12.9   0.0   0.00015    0.0091       2      54 ..    1180    1234 ..    1179    1260 .. 0.83
   3 !   33.1   0.1     1e-10   6.5e-09      90     189 ..    1286    1382 ..    1264    1386 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 7e-14
   TIGR01187   2 LGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlel..kalqeklGi.....tvvlvthD.qeealtmsdriavlrkGkiaqigepeeiyeePanefvarfi 201
                 +G  GsGk+ lL  + G  ++ sG++ ++g+ ++  +      n   ++  Lf h  v e v     +r ++     +  +e+L   + +e+++ k + lsGGq+ rvalarav ++ +i ++D++lsa+D ++ +++ +e   k+l    G       v+l t   q+      d+i vlr+G+i+  g+ +e+ ++ ++ef+ rf+
  MMETSP1061-20121228|5060_1 546 VGGVGSGKSSLLNGILGELRVLSGNVEVKGK-LAYFSQTPFIANATVKANILFSH--VDEPVDEEKYQRAIECC-ALKHDMEMLPAGDRTEIGE-KGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEECitKDLLAGTGNcfekrSVILATNAlQHLNHPRVDKIIVLREGRIVEQGSYKELADDKSSEFS-RFL 747
                 5777888888888888877888888877765.44455555556666677777777..34555433333333333.3334456777777777776.5678***************************************9996347888888862222246777765366677889*************************9996.454 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00015
   TIGR01187    2 LGpsGsGkttlLrllaGleeldsGkilldgedvtevpae..krsvnvvfqsyaLf 54  
                  +G +G+Gk+tl+  l  + eldsGkil+dg d  ++     + ++ v+ q+  Lf
  MMETSP1061-20121228|5060_1 1180 VGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTklRSNIAVIPQDPVLF 1234
                  7999****************************98876431134577777777777 PP

  == domain 3    score: 33.1 bits;  conditional E-value: 1e-10
   TIGR01187   90 leefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiy 189 
                  l++  +   s++s Gqrq + +ara+     i+++De+ +a+D     ++q+ +++  e    t++ ++h  +  +  sd i v+ +Gk a  ++pe++ 
  MMETSP1061-20121228|5060_1 1286 LNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRS--EFADATCITIAHRIN-TIMDSDFILVMDSGKAAEFDKPEKLI 1382
                  555566667899***************************************87775..45568*******765.5667******************9986 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.9     2e-11   1.2e-09      20     182 ..     529     680 ..     519     726 .. 0.71
   2 !   50.9   0.3   5.1e-16   3.2e-14      19     218 ..    1162    1371 ..    1156    1373 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 2e-11
   TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltli.gglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavglee..rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevve 182
                  l+ in+e +pge+v + G  GsGk  ll+ i g lr v +G+++v gk  +  +   + +   k  ++f +    +    e+  + a+e           +  ++ +e++  ++  ++  k   lsgGqk rva+ara+ ++ ++ + d+  +a+d++ ++++ e
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGIlGELR-VLSGNVEVKGKLAYFSQTPFIANATVKANILFSHV---DEPVDEEKYQRAIEC----------CALKHDMEMLPAGDrtEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFE 680
                 5789*************************86615555.67899999887555544444444444444444332...222222222222222..........222223344444441156778899*********************************99988765 PP

  == domain 2    score: 50.9 bits;  conditional E-value: 5.1e-16
   TIGR02982   19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkek..........lsakeakakaeelleavglee......rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvth.dnrildvadrivkmedGk 218 
                  +vl+ +++e+  g  v + G +G+Gk tl+  +  + ++ +G++ + g +     +  l+++r +i +i q   l++  t + n+    e+ ++          l ++ + ++++e l+++gl++      ++    +++s Gq+q + iaral +  ++v+ de taa+d+++   + ++++    + ++  + ++h  n i+d +d i+ m++Gk
  MMETSP1061-20121228|5060_1 1162 RVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDT---RKIGLTKLRSNIAVIPQDPVLFS-GTIRSNLDPFGEFPDEevssvltrvgLFTTITGSTSTESLSSLGLGQvqslndQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATC--ITIAHrINTIMD-SDFILVMDSGK 1371
                  69999************************9877777788999998887765...5567999**********998886.588888864433322211111111124456677899999***99998888888999999**********************************************98877655..444551466666.789999*9997 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.3   1.3e-13   7.8e-12      15     175 ..     529     688 ..     524     714 .. 0.77
   2 !   42.7   0.1   1.6e-13     1e-11       7     183 ..    1155    1352 ..    1150    1362 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.3e-13
   TIGR01189  15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsg.ledlpva..........qLsAGqkrRlalarLllskaplWiLDEPttalDkeg.vellaellaaHla 175
                  l++++fe ++Ge+++v+G  G+GK++LL  + G l+  sG+ve+++            +l+y + ++ + +  +++ n+ f + +   ++++ + a+e   L++ +e lp+           +Ls Gqk R+alar +  +a + i+D+ + a+D++   +l++e +++ l 
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKG------------KLAYFSQTPFIAN-ATVKANILFSHVDEPVDEEKYQRAIECCALKHdMEMLPAGdrteigekgiTLSGGQKARVALARAVYHEADISIIDDALSAVDAHVaKHLFEECITKDLL 688
                 6899****************************************993............4567777666654.477788888777776666677777777777641444444222222233337********************************98736677877776654 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 1.6e-13
   TIGR01189    7 aveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqr.delaeellylgHldglKaeLsalEnLkfyaallq...............seqktveealekvgLsgledlp......vaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivlla 183 
                   ++ g  ++l+gl++el  G  + v+G+ G+GK+tL+  l  +++ +sG++ +++ ++ +    +l+ +++ +  +d +  + +++ nL+ + ++ +                +  t +e+l ++gL +++ l        ++ s Gq++ l +ar lls a + i+DE t+a+D+++ +++++++++  a    + +a
  MMETSP1061-20121228|5060_1 1155 RYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGlTKLRSNIAVIP-QDPVLFSGTIRSNLDPFGEFPDeevssvltrvglfttITGSTSTESLSSLGLGQVQSLNdqvregGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIA 1352
                  556667789*********************************************99988865144556666665.555666779999999888887767778888888876523337788888888877665431111114589******************************************9988877666655 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.4e-05    0.0015       3      48 ..     531     578 ..     529     605 .. 0.79
   2 !   22.6   0.0   1.9e-07   1.2e-05     125     226 ..     639     748 ..     612     752 .. 0.85
   3 !   49.8   0.1   9.8e-16   6.1e-14       3     216 ..    1165    1384 ..    1163    1395 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.4e-05
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglld..keltktsGeil 48 
                 + +n++ k g+++a+vG  GsGks    +ilg l   ++ ++++G+++
  MMETSP1061-20121228|5060_1 531 KRINFECKPGELVAVVGGVGSGKSSLLNGILGELRvlSGNVEVKGKLA 578
                 679*********************999999987752245666666654 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.9e-07
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLkll..eelrekrg.....lgillithDlgvvae.ladevavmekGkivergtvkelfqePkhettrkLl 226
                  lsGG   Rv +a a+  ea + i D+  +++D+ v++++ ++   ++l   +g      +++l t  l+ + +   d+++v+++G+ive+g+ kel ++ ++e +r L 
  MMETSP1061-20121228|5060_1 639 TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEECitKDLLAGTGncfekRSVILATNALQHLNHpRVDKIIVLREGRIVEQGSYKELADDKSSEFSRFLA 748
                 79************************************99987522344443331111258*********9987368********************9999999998875 PP

  == domain 3    score: 49.8 bits;  conditional E-value: 9.8e-16
   TIGR02770    3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal...alrgreialilqnP.......rsafnPlltikeqlletlkalekls.kqakelivealeavgLeeaeevlkky...pfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqe 216 
                  ++++++l rg  +++vG  G+Gks+  +++l + +      sG+il+dg +  ++   +lr  +ia+i q+P       rs ++P     ++ + ++ ++  l    + ++ +e+l+  gL +++ + ++      ++s G  q ++ia all+ a+++i De t+++D+++ a++ k +++  e  + + + i+h ++ +    d ++vm++Gk  e  ++++l+ +
  MMETSP1061-20121228|5060_1 1165 KGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVE----LDSGKILIDGYDTRKIgltKLR-SNIAVIPQDPvlfsgtiRSNLDPFGEFPDEEVSSVLTRVGLFtTITGSTSTESLSSLGLGQVQSLNDQVregGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRS--EFADATCITIAHRINTIMD-SDFILVMDSGKAAEFDKPEKLIAK 1384
                  78999****************************99....669********99999764555.579*******6655555588999999988877777766555437777899**********999987665222689***************************************999886..556778899******9987.799***********9999998864 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0051      0.32      17      90 ..     526     599 ..     519     613 .. 0.80
   2 !   27.2   0.1   6.4e-09     4e-07     140     234 ..     639     741 ..     617     771 .. 0.82
   3 !   55.0   0.6   2.2e-17   1.4e-15      21     221 ..    1164    1374 ..    1160    1386 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0051
   TIGR02314  17 kikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsn.aelvkarrqigmifqh 90 
                 ++  l+ +++    g+++ v+g  g+gks+l+  +    +  sg+v v gk l+ +s+ + +++a  +  ++f h
  MMETSP1061-20121228|5060_1 526 NLLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK-LAYFSQtPFIANATVKANILFSH 599
                 5678999*************************9997777899999999997.44444404445556666666666 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 6.4e-09
   TIGR02314 140 nlsggqkqrvaiaralasepkvllcdeatsaldpattqsile..llkei.....nrrlgltillithemdvvkr.icdevavidkgeliekgtvseifshpkt 234
                  lsggqk rva+ara+  e  + + d+a sa+d   ++ ++e  + k++     n   + +++l t  ++ + +   d++ v+ +g+++e+g+  e+  +  +
  MMETSP1061-20121228|5060_1 639 TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEecITKDLlagtgNCFEKRSVILATNALQHLNHpRVDKIIVLREGRIVEQGSYKELADDKSS 741
                 69***********************************9998755456652222244445689999999987764279****************9998665554 PP

  == domain 3    score: 55.0 bits;  conditional E-value: 2.2e-17
   TIGR02314   21 ldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkv...........tellalvglsdkk......dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgelie 221 
                  l+ +++ +p+g  +gv+g +gagkstl+  +  + +  sg++++dg d  ++    l+k r +i +i q    l s t+  n+    e+ ++    + ++v           te l+ +gl++ +          sn+s gq+q + iaral s   +++ deat+a+d  t   i ++++      + t + i+h ++ +    d + v+d+g+  e
  MMETSP1061-20121228|5060_1 1164 LKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKI---GLTKLRSNIAVIPQDPV-LFSGTIRSNLDPFGEFPDEEVSSVLTRVglfttitgstsTESLSSLGLGQVQslndqvREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSE--FADATCITIAHRINTIMD-SDFILVMDSGKAAE 1374
                  7888999********************988777777899********97665...79999*********965.557799999987777777777777766644444444444788998888754411110145689*************************************9999998753..345677778888887754.57777777777666 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.2e-05    0.0033      16      64 ..     533     581 ..     527     601 .. 0.85
   2 !   25.8   0.0   2.1e-08   1.3e-06     131     224 ..     639     740 ..     632     770 .. 0.78
   3 !   42.8   0.1   1.4e-13   8.6e-12      17     225 ..    1168    1387 ..    1161    1397 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.2e-05
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqds 64 
                 +++e +  +++a+ G  GsGk+sl++ i G +r  +g+++++g++   s
  MMETSP1061-20121228|5060_1 533 INFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAYFS 581
                 667776669**********************************976544 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 2.1e-08
   TIGR02142 131 kLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilP..yLerlsael.....kiPilyvsHsldevar.ladrvvvledGrvkaagkleevlaskd 224
                 +LsGG k Rva++RA+  + ++ ++D+ L+a+D +  k+++     + l a +     k  +++    l+ +++   d+++vl++Gr+  +g+ +e++ +k+
  MMETSP1061-20121228|5060_1 639 TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEecITKDLLAGTgncfeKRSVILATNALQHLNHpRVDKIIVLREGRIVEQGSYKELADDKS 740
                 7*********************************9998876321233333332222234578999999999988458******************9998764 PP

  == domain 3    score: 42.8 bits;  conditional E-value: 1.4e-13
   TIGR02142   17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLr.YGl...kraraeerri..........seekvi.....elLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdl 225 
                  d+elp    +++ Gr G+Gk++l+  +  ++ +d+g+i +dg    d+rk i l+  + +++++ q+  LF+  ++r+nL  +G    +++++  +r+          s+e++      ++ +++  ++   ++ s G +q   i+RAlLs   +++mDe  aa+D    + i   +++     +  ++ ++H ++ +   +d ++v++ G+ + + k+e+++a+  +
  MMETSP1061-20121228|5060_1 1168 DIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGY---DTRK-IGLTKLRSNIAVIPQDPVLFSG-TIRSNLDpFGEfpdEEVSSVLTRVglfttitgstSTESLSslglgQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEF--ADATCITIAHRINTIMD-SDFILVMDSGKAAEFDKPEKLIAKGGM 1387
                  6677777899********************************5...6666.********************86.899999645532113333333333111111111122222211111333444556677789**************************************987777543..35789********9987.8******************99998765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.5   0.00015    0.0094      26      73 ..     529     576 ..     519     583 .. 0.92
   2 !   28.3   0.0   3.9e-09   2.4e-07     148     238 ..     637     735 ..     597     760 .. 0.77
   3 !   51.1   1.1   4.5e-16   2.8e-14      13     249 ..    1150    1391 ..    1146    1399 .] 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 0.00015
   TIGR02769  26 vldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGq 73 
                  l+ ++++ + Ge va++G  G+Gks l   +lG  +  +G+v  +G+
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK 576
                 68999***************************************9996 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 3.9e-09
   TIGR02769 148 PrqlsGGqlqriniaralavePklivldeavsnldlvlqasilel..lkklkqefGl.....aylfithdlrlvq.kfaqrvlvldeGqiveeikvael 238
                    lsGGq  r+++ara+  e  + ++d+a+s +d +   +++e    k+l + +G      ++++ t  l+  +    ++++vl eG+ive+ +  el
  MMETSP1061-20121228|5060_1 637 GITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEEciTKDLLAGTGNcfekrSVILATNALQHLNhPRVDKIIVLREGRIVEQGSYKEL 735
                 4579**********************************999998522467888777622222568889999765515789************9755443 PP

  == domain 3    score: 51.1 bits;  conditional E-value: 4.5e-16
   TIGR02769   13 rtggllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsi.......savn.....prksvreiigePlrhltsldeserkariael.lelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhpagrll 249 
                  ++ +l  + +   vl++++++l +G  v+++Gr+GaGkstl   ll + +  +G++   G d  k+      ++r ++ ++ qd +       s ++     p + v +++   +  +t++  s   +  + l l +v+  +++++   +++s Gq q + iaral     ++++dea + +d    a i + ++     +  +++ i+h ++ +   ++ +lv+d G+  e  ++ e+l  k    r l
  MMETSP1061-20121228|5060_1 1150 KEASLRYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGL---TKLRSNIAVIPQDPVlfsgtirSNLDpfgefPDEEVSSVL-TRVGLFTTITGSTSTESLSSLgLGQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSE--FADATCITIAHRINTIMD-SDFILVMDSGKAAEF-DKPEKLIAKGGMFRDL 1391
                  5566666777789*************************************************999865...5677888888888642221111333311111222333332.23445677888888888887778899999999********************************************998887653..3346799******99976.899********8774.5555555555555555 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.3   8.4e-16   5.2e-14      19     230 ..     529     743 ..     520     792 .. 0.76
   2 !   33.3   0.6   1.1e-10   6.5e-09      18     222 ..    1162    1381 ..    1151    1386 .. 0.76

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 8.4e-16
   TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerve........elLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreel..kklqrklgv.....ttimvthd.qeealslaDrivvmnkgkieqvgtPeeiYeqPatkf 230
                  lk i+++ k gelv+++G  G Gk++LL  i G  +  +G++ ++g+               f    +  n tv++ni +   ++ +++e+ ++ +e        e+L   + ++ +ek    lsGGq+ rvaLara+    ++ ++D+ lsa+Da+v ++L ee   k+l    g        i+ t   q       D+i+v+ +g+i   g+ +e+ ++ +++f
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLA------------YFSQTPFIANATVKANILFSHVDEPVDEEKYQRAIEccalkhdmEMLPAGDRTEIGEK-GITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEECitKDLLAGTGNcfekrSVILATNAlQHLNHPRVDKIIVLREGRIVEQGSYKELADDKSSEF 743
                 799*******************************99999****9999853............3556667889999999999999888888777776652111111122333333333444.457****************************************9962345544333211111334444432444555689999999999999999999888777766 PP

  == domain 2    score: 33.3 bits;  conditional E-value: 1.1e-10
   TIGR03265   18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaenia.yG..........LknkklkreevaerveelLelvg......lsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222 
                  ++lk +++++ +g  v ++G  G Gk+tL+  +  + + d+G+il++g d+ ++  +  + +  ++ q  +Lf   t+++n++ +G          L+  +l ++ + ++ +e L+ +g      l+++ +   + +s Gq+q + +aral    +++++De  +a+Da   +++++ +++  +  + t i ++h  +  +  +D i vm++gk      Pe++
  MMETSP1061-20121228|5060_1 1162 RVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTklRSNIAVIPQDPVLFSG-TIRSNLDpFGefpdeevssvLTRVGLFTTITGSTSTESLSSLGlgqvqsLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRS--EFADATCITIAHRINTIM-DSDFILVMDSGKAAEFDKPEKL 1381
                  689999************************9999999*************99876441156889999*9999965.777776433321111111114444444444444445555555511111256666778899**********************************99999999987..455789999999887655.69**********9999999876 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.9   0.0   2.9e-16   1.8e-14     467     627 ..     528     683 ..     479     688 .. 0.83
   2 !   31.9   0.0   1.7e-10     1e-08     468     653 ..    1163    1368 ..    1156    1375 .. 0.85

  Alignments for each domain:
  == domain 1    score: 50.9 bits;  conditional E-value: 2.9e-16
   TIGR00954 467 vlieeLsfevksGnhlLiiGPnGcGKsslfR.ilgelWPvygglltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedller..eggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelak 627
                   +++++fe k G+ + ++G  G GKssl   ilgel  + g    ++ +gkl y  q P++++ t++  i++    e + e     ++ ++ +e   L++ +e    g    + +    LsgG+k R+a+AR  yH     ++D++ sAv   v ++l+e++ 
  MMETSP1061-20121228|5060_1 528 LCLKRINFECKPGELVAVVGGVGSGKSSLLNgILGELRVLSGN---VEVKGKLAYFSQTPFIANATVKANILFSHVDEPVDE-----EKYQRAIECCALKHDMEMlpAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEECI 683
                 557899**********************8754*****866654...56789*********************9877665554.....445555666666655544113345667788889*****************************************995 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 1.7e-10
   TIGR00954  468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg.............glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg...............wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelake..vgitllsvshrksLwkyHeylLkld 653 
                  +++ L +e++ G+++ ++G  G GKs l+  l  +  + +             g      ++++  +Pq P +  gt+R  +  P     f   ++ d+++  +L  v L   ++  ++                d v++     s G++q + +AR +      +++DE+t+Av  d + ++ + +++  ++ t ++++hr   +   +++L +d
  MMETSP1061-20121228|5060_1 1163 VLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSgkilidgydtrkiG--LTKLRSNIAVIPQDPVLFSGTIRSNL-DP-----F--GEFPDEEVSSVLTRVGLFTTITGSTSteslsslglgqvqslNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSefADATCITIAHRINTIMDSDFILVMD 1368
                  56789*********************8887777777776666777777655322..234578999**************875.22.....2..24788999999999999999988888899999999999998899************************************************9997446889*******99999899999888 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.6   1.7e-14   1.1e-12      17     210 ..     533     729 ..     525     732 .. 0.74
   2 !   18.7   0.0   3.6e-06   0.00023      18      91 ..    1168    1242 ..    1162    1253 .. 0.84
   3 !   15.4   0.1   3.6e-05    0.0022     122     208 ..    1290    1373 ..    1273    1377 .. 0.80

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 1.7e-14
   TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdh.trsapyerpvsmlfqennlfahltvrqnig.lGlkpglklnavqke.kvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklr....eemla..lvkkl.adekkltlllvthslsdaaa.iasqvvvvedGkikvl 210
                  +++ + Ge va++G  G+Gks+lln i G l   sG++ v++k    +++p+        + n lf+h+   + +     + ++   a++++ ++  +  +  i+         lsGGq+ rvalar + +e  i ++d+ +sa+d ++     ee ++  l++ +    +k++++l t  l+++    +++++v+ +G+i  +
  MMETSP1061-20121228|5060_1 533 INFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAyFSQTPFIAN--ATVKANILFSHVD--EPVDeEKYQRAIECCALKHDmEMLPAGDRTEIG----EKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAkhlfEECITkdLLAGTgNCFEKRSVILATNALQHLNHpRVDKIIVLREGRIVEQ 729
                 5777889***********************************98541455666544..4568999***975..433313456777777776541344444444444....45678********************************87651111455544444333123457889999999999875379**********9876 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 3.6e-06
   TIGR01277   18 dlsveaGervailGesGaGkstllnliaGflepasGeikvndkdh..trsapyerpvsmlfqennlfahltvrqni 91  
                  d+++ +G +v ++G +GaGkstl+  +   +e  sG+i +++ d   ++++  +  ++++ q+  lf+  t+r n+
  MMETSP1061-20121228|5060_1 1168 DIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTrkIGLTKLRSNIAVIPQDPVLFSG-TIRSNL 1242
                  677889******************99999************8775116677888889999999999985.666665 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 3.6e-05
   TIGR01277  122 lerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208 
                  +     ++s Gqrq + +ar l+    i+++de  +a+d      +  +++   +  + t + ++h+++ ++   + ++v++ Gk +
  MMETSP1061-20121228|5060_1 1290 VREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRS--EFADATCITIAHRINTIMD-SDFILVMDSGKAA 1373
                  555567899******************************9987777665543..4567899999999987665.5778888888866 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   2.9e-05    0.0018      15      63 ..     528     576 ..     518     584 .. 0.88
   2 !   24.6   0.1   4.4e-08   2.8e-06     136     223 ..     638     734 ..     619     740 .. 0.79
   3 !   45.9   1.7   1.4e-14   8.9e-13      11     224 ..    1158    1381 ..    1149    1389 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.9e-05
   TIGR03873  15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlaga 63 
                 l ++ ++ +  +G+l +++G  GsGks ll+ + G l+   G+v+++g+
  MMETSP1061-20121228|5060_1 528 LCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK 576
                 55677888999*********************************99875 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 4.4e-08
   TIGR03873 136 stlsGGerqrvhlaralaqePklllldePtnhldvsaqlell..alvrela......aegvtvvvalhdlnla.asvcdhvvvldgGrvvaaGppae 223
                  tlsGG++ rv lara+  e  + ++d+    +d +   +l+   + ++l        e+  v++a   l++     +d+++vl +Gr+v  G+ +e
  MMETSP1061-20121228|5060_1 638 ITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFeeCITKDLLagtgncFEKRSVILATNALQHLnHPRVDKIIVLREGRIVEQGSYKE 734
                 49****************************999976554444114556665899888667778887777765414579************9998765 PP

  == domain 3    score: 45.9 bits;  conditional E-value: 1.4e-14
   TIGR03873   11 aggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqd.....sdaevplsv......rdv.valGriPhrslfaadsdedaevvdralarve.lssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaev 224 
                   g   +++++d++ P G+  g++G  G+Gkstl+  l  +++ d G++ ++g d + +   +   ++a++ qd      +   +l         +v  +l r+   + +++++ + +++ +  l++v+ l++      s +s G+rq   +aral    +++++de t  +d  +   + +++r+  a+ +t +   h +n   + +d ++v+d+G+ +   +p+++
  MMETSP1061-20121228|5060_1 1158 PGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDpvlfsGTIRSNLDPfgefpdEEVsSVLTRVGLFTTITGST-STESLSSLGLGQVQsLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFAD-ATCITIAHRINTI-MDSDFILVMDSGKAAEFDKPEKL 1381
                  5666799*************************************************9999999999******93322211222332111111123313677887777777766.44556666666654144555556789*******************************************999665.5666666999975.568*********98877776665 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   8.6e-08   5.4e-06      21      69 ..     527     575 ..     522     586 .. 0.91
   2 !    8.5   0.0    0.0042      0.26     149     187 ..     639     677 ..     633     692 .. 0.84
   3 !   19.4   0.0     2e-06   0.00012      22      69 ..    1162    1209 ..    1154    1228 .. 0.88
   4 !   19.0   0.0   2.6e-06   0.00016     148     208 ..    1295    1354 ..    1271    1367 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 8.6e-08
   TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrh 69 
                 l  lk++++e + Gelva+ G  G+Gks+ll  + ++ ++ sg++ v+ 
  MMETSP1061-20121228|5060_1 527 LLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKG 575
                 66899***************************************99985 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0042
   TIGR02324 149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkv 187
                 t sGG k Rv +ara+  +  i ++d+  +++da   k 
  MMETSP1061-20121228|5060_1 639 TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKH 677
                 99************************9999999876554 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 2e-06
   TIGR02324   22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrh 69  
                   vlk +++e+  G  v + G++GaGkstl+ sl +    +sg+il+  
  MMETSP1061-20121228|5060_1 1162 RVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDG 1209
                  5899999*************************************9864 PP

  == domain 4    score: 19.0 bits;  conditional E-value: 2.6e-06
   TIGR02324  148 atfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208 
                  + fs G +q + iaral++   i+++de ta++da + + + +++++  a  a+ i+i h 
  MMETSP1061-20121228|5060_1 1295 SNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFA-DATCITIAHR 1354
                  67*********************************999989998887765.5677888884 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.1   3.7e-13   2.3e-11       1     157 [.     530     682 ..     530     690 .. 0.82
   2 !   11.0   0.0   0.00081      0.05       1      54 [.    1164    1217 ..    1164    1242 .. 0.87
   3 !   23.9   0.1   9.3e-08   5.8e-06     112     195 ..    1294    1374 ..    1273    1379 .. 0.87

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 3.7e-13
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwltvreniala.vdavlrdls..kserreiveehielvgl..reaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekl 157
                 lk +++e k ge+++++g  g gks+lln i g  +  sg v ++gk         +  f +  ++   tv+ ni ++ vd+ + + +  ++ +   +++++e++    r+    +   lsgg k rva+ara+    ++ ++d+ + a+da   ++l e+ 
  MMETSP1061-20121228|5060_1 530 LKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK---------LAYFSQTPFIANATVKANILFShVDEPVDEEKyqRAIECCALKHDMEMLPAgdRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEEC 682
                 6899*****************************************97.........6789999999*********88636665444330033334457888888755113334456678*********************************9999988875 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00081
   TIGR01184    1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgp 54  
                  lk++d+e+ +g  + ++g +g gkstl+  +  + +  sg + ++g +  + g 
  MMETSP1061-20121228|5060_1 1164 LKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGL 1217
                  68999**********************988888888999999999988777665 PP

  == domain 3    score: 23.9 bits;  conditional E-value: 9.3e-08
   TIGR01184  112 peqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaak 195 
                   +++s g +q + iaral     ++++de   a+da t   +q+  ++  e a++t++ ++h ++ +++ sd ++++ +g aa+
  MMETSP1061-20121228|5060_1 1294 GSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKV-MR-SEFADATCITIAHRIN-TIMDSDFILVMDSGKAAE 1374
                  567899***********************************9964.44.577889*********7.6899**********9987 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.9e-05    0.0012       2      42 ..     536     576 ..     535     586 .. 0.92
   2 !   20.5   0.0   1.1e-06     7e-05     113     203 ..     639     739 ..     611     749 .. 0.76
   3 !   36.1   1.4   1.9e-11   1.2e-09       2     180 ..    1170    1362 ..    1169    1385 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.9e-05
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagk 42 
                 + ++Gel++++G  G+Gk++ll  ilg ++v  G+v+v+gk
  MMETSP1061-20121228|5060_1 536 ECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK 576
                 6789***********************************98 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 1.1e-06
   TIGR03771 113 elsGGqrqrvlvaralavkpslllldepftGldlpsqellve.lfee..lagegt.....ailmtthdlaeava.tcdr.vvllngrvvadgapdqlqdaa 203
                  lsGGq+ rv +ara+  +  + ++d+ ++ +d    ++l e  +++  lag g+     +++++t  l +  +  +d+ +vl +gr+v +g+ ++l d +
  MMETSP1061-20121228|5060_1 639 TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEeCITKdlLAGTGNcfekrSVILATNALQHLNHpRVDKiIVLREGRIVEQGSYKELADDK 739
                 49*******************************99988886633332335665532222289999*99988765345651567789******999998865 PP

  == domain 3    score: 36.1 bits;  conditional E-value: 1.9e-11
   TIGR03771    2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrk.g....rreiGyvpqrhe.fa......w....dfpidveqtvlsGragliGllrrpkkadfaavadalervkltelad..rpvG.elsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatc 180 
                  ++ +G  +g++G  GaGk+tl+ ++l +++   G++ ++g  +rk g    r++i  +pq    f+           +fp +   +vl     ++Gl+   + +  +   ++l   +++ l+d  r  G ++s Gqrq +++aral    s++++de  + +d  +  ++ +++++  ++ t+i   +h +   +++ 
  MMETSP1061-20121228|5060_1 1170 ELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKiGltklRSNIAVIPQDPVlFSgtirsnLdpfgEFPDEEVSSVL----TRVGLFTTITGSTSTESLSSLGLGQVQSLNDqvREGGsNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCI-TIAHRINTIMDSD 1362
                  6778999*********************************988753233337899****96431331111112111145555555554....4555555544444444444444444444444114444389*****************************************99877766655.5568887777754 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3     5e-11   3.1e-09      17     224 ..     529     740 ..     519     788 .. 0.74
   2 !   33.5   0.1     1e-10   6.4e-09      15     209 ..    1161    1371 ..    1146    1384 .. 0.72

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 5e-11
   TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlkns......levrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPn...qlve...irevikeia...kdktvilsthimqevea.lcdrviiinkGkivadkkleelkaaek 224
                  l+ + fe ++Ge+v  +G  G+Gks+l+  + g l+  sG v+v+g+ +  +         v+ ni +    +P+ ++ y r           ++  +lk+ +e ++  +G ++e   k   ls G + rv la+a+ h+ ++ i+d+  + +d      l e    +++++  +   ++++vil+t  +q ++    d++i++ +G+iv + + +el   ++
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAYFSQtpfianATVKANILFSHVDEPVDEEKYQR----------AIECCALKHDME-ML-PAGDRTEIGEKGITLSGGQKARVALARAVYHEADISIIDDALSAVDAHvakHLFEeciTKDLLAGTGncfEKRSVILATNALQHLNHpRVDKIIVLREGRIVEQGSYKELADDKS 740
                 5789*******************************************876543300111134555555555555555555544..........344444555554.33.57999999999999********************************8622245553423566665552225789**********975379**************99999965443 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 1e-10
   TIGR03522   15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsl.evrkniGylPehnPlyldlyvreyl....ef.....saal..yklkgrklkkrveelielvGlkaeq.....h.kkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGk 209 
                   ++l+ +  e  +G+ vG +G  GaGkstlm  l   ++ dsG + ++g+d  k  l + r ni  +P+   l+    +r  l    ef     s+ l   +l  +   +   e +   Gl + q          +++s G rq   +a+all   +++i+de t+ +d +    i++v+++   d t i  +h ++ +    d +++++ Gk
  MMETSP1061-20121228|5060_1 1161 PRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLtKLRSNIAVIPQDPVLFSGT-IRSNLdpfgEFpdeevSSVLtrVGLFTTITGSTSTESLSSLGLGQVQslndqVrEGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIMD-SDFILVMDSGK 1371
                  567888889999****************************************9976528999******987777543.444441111332111111111123334445555566677777755431111020334689*******************************************99999999988886655432.34455566665 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.1   4.7e-09   2.9e-07     319     482 ..     511     678 ..     483     685 .. 0.79
   2 !   24.1   0.0   4.3e-08   2.7e-06     285     381 ..    1112    1207 ..    1088    1224 .. 0.73
   3 !   13.2   0.0   8.3e-05    0.0052     161     239 ..    1296    1375 ..    1285    1378 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 4.7e-09
   TIGR03719 319 GdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqs...rdalddnktvweeisdGldllklgkvevnsrayvgrfnfkGadqqkkvge....lsGGernrvhlakllkeggnvllldePtndldvetlral 482
                 G+k+ + e++     + l +++++f+  +g +v v+G  G+Gks l++ i g+ +  sG++++    klay  q+    +a  + + ++ ++ +  d  k  ++ +++ a    +++  a  + ++ge    lsGG++ rv la+ + +++++ ++d+    +d +  + l
  MMETSP1061-20121228|5060_1 511 GQKLEDPESVGSLSSNLLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVK--GKLAYFSQTpfiANATVKANILFSHVDEPVDEEKY-QRAIECCALKHDMEMLPAGDRTEIGEkgitLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHL 678
                 5555555566655666677999****************************************95..47889988722246666677889999999998765.678999999999998877777777643444**************************9999988876665 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 4.3e-08
   TIGR03719  285 kskarlaryeelaseesekkeetaeivippgerlGdkvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381 
                   s  r+++y e+ +e+ ++ +  ++    + +  G+ v++  +l+ + g   +++ l+++lp+g+ vGv+G  GaGkstl+  +    + dsG++ i
  MMETSP1061-20121228|5060_1 1112 ISVERVRSYSEVPTEAPRDMD-VDNTLPESWPSGGSIVFKEASLRYRPGLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILI 1207
                  466677777777655443333.33333344466778888888888888999999***************************************9977 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 8.3e-05
   TIGR03719  161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflk.eyk.GtvvavthdryfldnvaeWileldrGegipy 239 
                  ++s G+++ + ++r ll+   ++++de t  +da++ a ++k ++ e++  t + ++h    +   +++il +d G++  +
  MMETSP1061-20121228|5060_1 1296 NFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRsEFAdATCITIAHRINTI-MDSDFILVMDSGKAAEF 1375
                  678888888889999999999999999999999999998888875356525667777754433.33678888888887665 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.8e-05    0.0011      15     210 ..     529     734 ..     522     745 .. 0.80
   2 !   44.2   0.1   6.1e-14   3.8e-12      14     201 ..    1162    1371 ..    1150    1390 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.8e-05
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiG.sliesPalyenlta.renlkvrtlllglpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelre.liks..fpekGi.....tvilsshilsevel.ladhiGiiseGklkyekkidk 210
                  ++ ++++ k  ++ +++G  G+Gks+ll  + G lr  sG++ ++g+    ++   i  + +++  l+ ++    ++ k +  ++    ++  e+l   d ++++ k    +s G k r+ +a a+ ++ ++ i+d+    +d    ++l e  i+   +   G      +vil++  l  +++  +d+i +++eG++  ++++++
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAYFSQTPFIAnATVKANILFSHVDEpVDEEKYQRAIECCALKHDMEMLPAGDRTEIGEKGI-TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEeCITKdlLAGTGNcfekrSVILATNALQHLNHpRVDKIIVLREGRIVEQGSYKE 734
                 67899******************************************987777666664278899999999864267778888888888888889999999999988765.799******************************999988854244431134444222222788888888888763589999999999988887765 PP

  == domain 2    score: 44.2 bits;  conditional E-value: 6.1e-14
   TIGR03740   14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkk....iGsliesPalyenltarenl............kvrt...lllglpesrieevlkivdl......entekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGk 201 
                   v++ +++++++ s  g++G  GaGkstl+  l  +++ +sG+il+dg +  +  l+k    i ++ ++P l+   t r nl             v t   l  ++  s+  e l+ ++l      +++ +   ++fs+G +q l ia all    ++i+de t  +d      ++++++s   + + + ++  i + +   +d+i ++  Gk
  MMETSP1061-20121228|5060_1 1162 RVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKlrsnIAVIPQDPVLFS-GTIRSNLdpfgefpdeevsSVLTrvgLFTTITGSTSTESLSSLGLgqvqslNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIM--DSDFILVMDSGK 1371
                  589999*****************************************988777666541111444556676664.3333333111211222111232211133455667777777665541111115556677899*********************************9999999**999888887777766554333..356666666665 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   3.2e-13     2e-11      35     255 ..     519     736 ..     486     743 .. 0.75
   2 !   23.0   1.0   9.3e-08   5.7e-06      47     245 ..    1170    1372 ..    1146    1383 .. 0.74

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 3.2e-13
   TIGR00955  35 k.....pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkc.adtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvk..vLkkl......aqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                 +     ++   lk++  + k+Gel+Av+G+ G+GK+ Lln +             ++l G+     e++   ay  q   fi   tv+ ++ fs h+  + +  k ++     ++ +++++  +   t ig +g   +lSgG++ R+ala  + ++  + ++D+  s  D+  a+++ +  + k+l      + + ++vil             dkii+l eGr+v +Gs +e++
  MMETSP1061-20121228|5060_1 519 SvgslsSNLLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGEL---------RVLSGNV----EVKGKLAYFSQTP-FIANATVKANILFS-HVDEPVDEEKYQRAIECCALKHDMEMLPAgDRTEIGEKGI--TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEecITKDLlagtgnCFEKRSVILATNALQHLNHPRVDKIIVLREGRIVEQGSYKELA 736
                 03334467778999**************************876533.........3455643....3566789999986.89999*****9995.77777766777888888999999*988772569***8885..9**************************************98644445543222334455778888776666667789*************99998876 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 9.3e-08
   TIGR00955   47 vaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnG...ekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkk.ekrerv........eevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrv 245 
                  ++  G  + v+G  GaGK+TL+  l    e ++   g++l++G   +k++ +++r + a + qd +++   t+r +L    ++  ++ +++  ++             e l++lgL + +    +v +     S G+r+ l +a  ll+  +++++DE T+  D+ + a + kv+++      t i+  H    ++++  d i+++++G+ 
  MMETSP1061-20121228|5060_1 1170 ELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDS---GKILIDGydtRKIGLTKLRSNIAVIPQDPVLFS-GTIRSNLDPFGEFPDEE-VSSVlTRVGLFttitgstsTESLSSLGLGQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADA-TCITIAHR-INTIMDS-DFILVMDSGKA 1372
                  566788899*************98877666554...55****95555788899999***9*99998775.58999998888886555.4444455543311111111567999*******99999999899****************************************99999643333.33444443.3444443.55666666665 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.3     7e-07   4.4e-05      17     101 ..     529     598 ..     522     742 .. 0.56
   2 !   34.7   0.0     5e-11   3.1e-09      18     216 ..    1164    1368 ..    1159    1374 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 7e-07
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlela 101
                  l++++++ ++gel +++G  G+Gk+ ll+ i G  r  +G+v +kgk     ++  i                + tv+ n+  +
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAYFSQTPFI---------------ANATVKANILFS 598
                 6899****************************************99974333333333...............344555555444 PP

  == domain 2    score: 34.7 bits;  conditional E-value: 5e-11
   TIGR03411   18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenle.lalkadksvlall.....farlske.ekeriee..vleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlh 216 
                  l+ l++++ +g+   ++G  GaGk+tl+  +   ++ d+G++l++g d +k+  +++ r+ i+   q p +f+  t++ nl+      d++v ++l     f++++ + ++e++++  + ++ +L++++++  ++ s Gq+q L i+  l+  ++++++De +a + ++  +++ +++++   + + + + h ++ + +  + + v+ 
  MMETSP1061-20121228|5060_1 1164 LKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKL-RSNIAVIPQDPVLFS-GTIRSNLDpFGEFPDEEVSSVLtrvglFTTITGStSTESLSSlgLGQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIMDS-DFILVMD 1368
                  678899999999999*********************************999988775.789********9996.699****7323333344433331111133333320233333311345567999999999***********************************************************99877653.3455555 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   1.2e-06   7.2e-05      15      64 ..     529     576 ..     524     581 .. 0.91
   2 !   14.8   0.0     5e-05    0.0031     144     230 ..     639     733 ..     581     744 .. 0.77
   3 !   28.4   0.7   3.4e-09   2.1e-07      14     225 ..    1162    1374 ..    1160    1383 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.2e-06
   TIGR01978  15 iLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgq 64 
                  Lk +n e k+Ge++a++G  GsGks L + + g+   +v sG++++kg+
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLNGILGE--LRVLSGNVEVKGK 576
                 5899*****************************96..7899999999986 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 5e-05
   TIGR01978 144 GfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaeg.vnk..lree.....ekalliithyerllelikPdvvhvlldGrivksGdve 230
                   sGG k r  + +    e ++ i+D++ s +D    k ++e+ + k  l+ +     ++++++ t   + l++ + d++ vl +Griv++G+ +
  MMETSP1061-20121228|5060_1 639 TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEEcITKdlLAGTgncfeKRSVILATNALQHLNHPRVDKIIVLREGRIVEQGSYK 733
                 47********************************9999877541443223322334558999******************************864 PP

  == domain 3    score: 28.4 bits;  conditional E-value: 3.4e-09
   TIGR01978   14 eiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekll.....keklellelde.elleRslneG...fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivk 225 
                  ++Lkgl++e+ +G  + ++G+ G+GkstL+  l   + +e+ sG+i ++g d+ ++    + r  + +  q p+  +G   +++         +++ ++ l  +   +++     +e+l++l l + + l+ ++ eG   fs G ++   i + +l   +++i+De+ + +D D+   + +++ + +  + +++ i+h  r+   +  d++ v+ +G+ ++
  MMETSP1061-20121228|5060_1 1162 RVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLL--RIVELDSGKILIDGYDTRKIGLT-KLRSNIAVIPQDPVLFSGTIRSNLD-P-FGEFPDEEVSSVLTRVGLFTTItgstsTESLSSLGLGQvQSLNDQVREGgsnFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVM-RSEFADATCITIAH--RINTIMDSDFILVMDSGKAAE 1374
                  69***************************99987..578999**************987.568889999*********7665542.2.222222333344444444444401001444555555446777878887767799*****99999999999****************988877654.44445666666666..8889999**********9765 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.38        24      20      65 ..     530     575 ..     520     605 .. 0.86
   2 !   21.6   0.0   3.2e-07     2e-05     135     226 ..     639     739 ..     621     764 .. 0.82
   3 !   36.8   0.2   7.7e-12   4.8e-10      20     224 ..    1164    1383 ..    1156    1387 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.38
   TIGR01288  20 vndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlg 65 
                 ++ + f    ge   ++g  g+gks++   +lg      g++ v g
  MMETSP1061-20121228|5060_1 530 LKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKG 575
                 5678899999**********************99888888887766 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 3.2e-07
   TIGR01288 135 dlsggmkrrltlaralindpqllildepttgldph.arhliwerl.rslla.rg.....ktilltthlmeea.erlcdrlcvleagrkiaegrpdalideq 226
                 +lsgg k r++lara+  + ++ i+d+  + +d h a+hl  e + + lla  g     ++++l+t  ++   +  +d++ vl +gr + +g  + l d++
  MMETSP1061-20121228|5060_1 639 TLSGGQKARVALARAVYHEADISIIDDALSAVDAHvAKHLFEECItKDLLAgTGncfekRSVILATNALQHLnHPRVDKIIVLREGRIVEQGSYKELADDK 739
                 79*********************************778999988735677632333333467777777666515679**********99999999888875 PP

  == domain 3    score: 36.8 bits;  conditional E-value: 7.7e-12
   TIGR01288   20 vndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgry.....fglstr.......eieevipsl..lefarleskad.vr..vadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalid 224 
                  ++ l + + +g   g++g  gagkst+   +l ++  d gki + g +         r++i v+pq d +    t+r nl  fg +      ++ tr       +  +   sl  l + +++s  d vr   +++s g ++ l +aral+    ++i+de t+ +d  +   i + +rs +a    i ++  +    +   d + v+++g+     +p+ li 
  MMETSP1061-20121228|5060_1 1164 LKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKiGLTKLRSNIAVIPQ-DPVLFSGTIRSNLDPFGEFpdeevSSVLTRvglfttiTGSTSTESLssLGLGQVQSLNDqVRegGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRSEFADATCITIAHRINTIMD--SDFILVMDSGKAAEFDKPEKLIA 1383
                  5667888899********************************9877554331345569*******9.45556678888888888762222211222211111001122222222255556665444233226899***********************************************9988887766655444..68999999999888899999885 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   6.6e-05    0.0041      35      86 ..     525     576 ..     512     592 .. 0.88
   2 !   25.1   0.0   2.8e-08   1.7e-06     163     260 ..     638     743 ..     619     804 .. 0.75
   3 !   19.7   0.9   1.2e-06   7.3e-05      49     255 ..    1173    1384 ..    1164    1394 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.6e-05
   TIGR03415  35 GlvlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkde 86 
                  + l  + ++++ + Ge++ ++G  GsGkssll  + g   v  G+v+vk +
  MMETSP1061-20121228|5060_1 525 SNLLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGK 576
                 567778899999**************************999*******9865 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 2.8e-08
   TIGR03415 163 gelsGGmqqrvGlarafateadillmdePfsaldPliraklqdelle...l...qkkl.kktivfvshdldealk.lGnriaimegGrivqlgtpeeivlkPaney 260
                   lsGG + rv lara+  eadi ++d+ +sa+d  + ++l +e ++   l    + + k+ +++ +  l+   +   ++i ++++Griv +g+ +e+  + ++e+
  MMETSP1061-20121228|5060_1 638 ITLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEECITkdlLagtGNCFeKRSVILATNALQHLNHpRVDKIIVLREGRIVEQGSYKELADDKSSEF 743
                 569**************************************99977522111112233255677777777654331346888888888888888888776666665 PP

  == domain 3    score: 19.7 bits;  conditional E-value: 1.2e-06
   TIGR03415   49 eGeilvlmGlsGsGkssllravnglnpvsrGkvlvkded.kevdvakcdea.....tlrklrtkrvsmvfqkfallPWr...tveenvafGlelsGvakaerrkrveeql.elvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlk 255 
                  +G  + ++G +G+Gks+l+ ++ ++  +  Gk+l+   d +++ ++k+ ++     +   l   ++   +  f+ +P     +v   v++   ++G +  e  +     l ++ +l++   +   ++s G +q + +ara+  +a i++mde  +a+d    a++q  +    +    t + ++h ++  +   + i +m++G+    ++pe++++k
  MMETSP1061-20121228|5060_1 1173 RGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDtRKIGLTKLRSNiavipQDPVLFSGTIRSNLDPFGEFPDEevsSVLTRVGLFTTITGSTSTESLSSLG--LgQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMR--SEFADATCITIAHRINTIMD-SDFILVMDSGKAAEFDKPEKLIAK 1384
                  56666778999999999999999999999999999876525677777655411111334577778888888899999761114455667777777777777665443..313445777777778899***************************************8543..3445789********98887.6889***************99976 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.2    0.0031      0.19      14      48 ..     528     562 ..     520     590 .. 0.77
   2 !   14.8   0.0   2.8e-05    0.0017     168     257 ..     639     736 ..     594     753 .. 0.71
   3 !   15.4   0.1   1.8e-05    0.0011      14      60 ..    1162    1206 ..    1156    1223 .. 0.84
   4 !   17.8   0.0   3.4e-06   0.00021     426     517 ..    1295    1383 ..    1273    1387 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0031
   TIGR03269  14 evlknisleleeGevlGilGksGaGksvllhllrG 48 
                   lk i++e + Ge++ ++G  G+Gks ll+ + G
  MMETSP1061-20121228|5060_1 528 LCLKRINFECKPGELVAVVGGVGSGKSSLLNGILG 562
                 57999999999999999999999999999875444 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 2.8e-05
   TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktak.lvhealkeavke......edislvl.tshwpeviedlsdkaillekGeiveeGepeevv 257
                  lsGG+k rv lar + +e  + + d+   ++d + ak l  e +++   +      e+ s++l t    ++ +  +dk i+l +G ive+G+ +e+ 
  MMETSP1061-20121228|5060_1 639 TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKhLFEECITKDLLAgtgncfEKRSVILaTNALQHLNHPRVDKIIVLREGRIVEQGSYKELA 736
                 47888888888888888888888888888888888886233334433222111112245566551444455555678888888888888888777765 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 1.8e-05
   TIGR03269   14 evlknisleleeGevlGilGksGaGksvll.hllrGldeyeptsGkii 60  
                  +vlk +++el  G  +G++G++GaGks l+  llr ++    +sGki+
  MMETSP1061-20121228|5060_1 1162 RVLKGLDIELPRGSKVGVVGRTGAGKSTLMvSLLRIVEL---DSGKIL 1206
                  699***********************9887256666554...777776 PP

  == domain 4    score: 17.8 bits;  conditional E-value: 3.4e-06
   TIGR03269  426 delseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareel.eetfvivshdmdfvlevcdraalmrdGkivkiGdpeeive 517 
                  +++s+G+r  + +a+ l+    ivi+de t ++d  t  ++++ +   r e+ + t + ++h ++ +++  d + +m +Gk  +  +pe++++
  MMETSP1061-20121228|5060_1 1295 SNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVM---RSEFaDATCITIAHRINTIMD-SDFILVMDSGKAAEFDKPEKLIA 1383
                  689***********************************9998864...44541679999*****99988.79999********9999999876 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   7.4e-07   4.6e-05      20      61 ..     532     574 ..     519     589 .. 0.88
   2 ?    2.9   0.0      0.23        14     141     223 ..     639     733 ..     628     744 .. 0.53
   3 !    9.1   0.0    0.0029      0.18      26      61 ..    1173    1208 ..    1163    1223 .. 0.80
   4 !   17.0   0.0   1.1e-05    0.0007     135     218 ..    1290    1374 ..    1279    1385 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 7.4e-07
   TIGR02323  20 rvsf.lypGevlgivGesGsGkstllkalaarlladaGevtye 61 
                 r++f   pGe++++vG  GsGks+ll+ + ++l   +G+v+ +
  MMETSP1061-20121228|5060_1 532 RINFeCKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVK 574
                 499999*****************************99999865 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.23
   TIGR02323 141 afsGGmqqrlqiarnlvtrprlvfmeptGGlv.svqarll....llrglvrel.....glaviivt....hlavarllaqrllvmkqGrvvesGltr 223
                 ++sGG + r+ +ar++  +  + +++ +   v +  a+ l    +++ l+        + +vi+ t    hl   r   ++++v+++Gr+ve+G  +
  MMETSP1061-20121228|5060_1 639 TLSGGQKARVALARAVYHEADISIIDDALSAVdAHVAKHLfeecITKDLLAGTgncfeKRSVILATnalqHLNHPR--VDKIIVLREGRIVEQGSYK 733
                 6677777777777777766666666443333202223333122233333332211111224455441111333333..57899*********99765 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0029
   TIGR02323   26 pGevlgivGesGsGkstllkalaarlladaGevtye 61  
                   G  +g+vG +G+Gkstl+ +l   +  d+G++  +
  MMETSP1061-20121228|5060_1 1173 RGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILID 1208
                  47889*****************99999999998654 PP

  == domain 4    score: 17.0 bits;  conditional E-value: 1.1e-05
   TIGR02323  135 arikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivthlavarllaqrllvmkqGrvve 218 
                   r   ++fs G +q l iar+l++   +v+m e t  +    +ar+  ++r+   +   + i ++h   + + ++ +lvm  G+  e
  MMETSP1061-20121228|5060_1 1290 VREGGSNFSVGQRQLLVIARALLSGASIVIMdEATAAVdADTDARIQkVMRSEFAD--ATCITIAHRINTIMDSDFILVMDSGKAAE 1374
                  5666789************************9999998888999999788887775..56788999666778899*******99876 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.3     0.086       5.3     222     313 ..     329     423 ..     174     465 .. 0.65
   2 !   23.5   0.0   6.4e-08     4e-06     351     549 ..     524     728 ..     488     732 .. 0.73
   3 !   23.4   1.7   6.7e-08   4.1e-06      57     501 ..     866    1328 ..     829    1346 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.086
   TIGR01194 222 avrvadlniieilifilaktvGsllls...llvGllltlaayfavidakaisasvlvlly..ikGplvqlvsilpilararvaftrlaelserisep 313
                  + +++ ++ + l +i a  +  +l s   llv l  ++a ++   d    +a   v l+  ++ pl +l s++  + +a v++ r+  +     e 
  MMETSP1061-20121228|5060_1 329 ITDLREKELKDLLTYIYATCLSIMLWScvpLLVSLSTFAAYVYLGNDLDVATALTSVALFeiLRFPLFMLPSVINRIVEAGVSLDRVKSFLL--CEE 423
                 34677888899999999*99999998744467999999999998877666666554444433899**********************87643..333 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 6.4e-08
   TIGR01194 351 ssegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqp..dekkqasldqa..ttylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyee.llpdlkr.rG.....ktilvishddryfel..adrlikladGkvvk 549
                 ss+ + l  i++  + Gelv +vG+ G Gks+l+  +lG  +  +G++ ++G+     s+  +    ++v a+  lf ++ +p  +ek q +++    ++ ++ l   d+ ++ + + +    ls Gq+ r+al  a   e  + ++d+  +  d    + ++ee +  dl    G     +++++ +   ++++    d++i l +G++v+
  MMETSP1061-20121228|5060_1 524 SSNLLCLKRINFECKPGELVAVVGGVGSGKSSLLNGILGELRVLSGNVEVKGKLAYF-SQTPFIA-NATVKAN-ILFSHVDEPvdEEKYQRAIECCalKHDMEMLPAGDRTEIGEKGIT----LSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFEEcITKDLLAgTGncfekRSVILATNALQHLNHprVDKIIVLREGRIVE 728
                 677788999*******************************************86543.4444432.2344443.455555444215555666654312456888889999999999888....*************************9988888877666666614557643133222224566666666766532268888888888886 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 6.7e-08
   TIGR01194   57 sfvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtllilttllvelavtlfglaylayls..vvvflltvvlivlGvaayllarsrGlkftykvrdeedelnkyttalvsGlkelklnrirrlsfarsaisesavrvadlniieilifilaktvGslllsllvGllltlaayfav.......idakaisasvlvlly...ikGplvqlvsilpilararvaftrlaelserisepepelelseaenvllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvq.........pdekkqasl...........dqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqd 501 
                   f+ + l+ ++      +f   ++ r   ++  +l + ++ ap+   +     r++  ++ d+ t+++ l ++t     ++++   ++ l   +   + f + ++ ++l  aa+  ++     +ty+     d + +       G     +  i r + +++ +     ++ d +     ++ +a+    + l l+  l++tla +f+        +d+k      l++ y   i   l+  v +   l  + ++++r+  +se    p   +   + +n  l +   s +s+ +k+  + y+      +  l  +d+ + +G  v +vG  G Gkstl+  ll +    +G++l+dG    +      r   + +  d  lf   +          pde+  + l             +t+ ls l+l +  +++d      +++s+Gqr+ l +  a l    ++++de +a  d
  MMETSP1061-20121228|5060_1  866 IFGLINLMNVIGIFLRLIFVMMAGLRASRKIYSNLLQVIMHAPMAFFDTTPVGRIINRFSLDMYTIDSQL-MMTVRSYISTILN-VVSALVVNTgvSPAFTIGIIPLLLFYAAQQRFF----TMTYRELKRLDSVSRSPIYALLGETIDGVATI-RAYDSEASLMRRMKNMLDAQQNAYYLLCVAQCWLAIRLELVGTLVITLACLFPLwhyalhgADPKFAGLAGLAISYalsITQSLNWSVRMASDLEASMISVERVRSYSEV---PTEAPRDMDVDNT-LPESWPSGGSIVFKEASLRYRP---GLPRVLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELDSGKILIDGYDTRKIGLTKLRSNIAVIPQDPVLFSGTIRsnldpfgefPDEEVSSVLtrvglfttitgSTSTESLSSLGLGQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVD 1328
                  3444445555555556678888888888999999999999999999999999999999999999997655.4444444444433.333333322003455555555555444444443....34444444444444433333334444444555.55667777888888888888888888888888888888888888888887776422222225676655566676662226667777777777788899999999999875...6666667777765.55777899*******9999874...56889999*********************************************999999999999999999999999888633333334455554443312222222222356788999***999999999999999**************************9865333 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   1.1    0.0045      0.28      16      45 ..     529     558 ..     523     740 .. 0.77
   2 !   35.0   0.2   1.9e-11   1.2e-09      16     218 ..    1163    1371 ..    1159    1383 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0045
   TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmk 45 
                  l+ i+++ ++Ge+v++ G  G+Gks+l+ 
  MMETSP1061-20121228|5060_1 529 CLKRINFECKPGELVAVVGGVGSGKSSLLN 558
                 577788888888888888888888888865 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 1.9e-11
   TIGR02633   16 aldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleni.....flGne....itlkGglmdydamvlrakel....lrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGq 218 
                   l+++d++l  G  v++ G  GaGkstlm  l  +      +G+il +g + +  ++ +  r  i++i q+ +l    ++  n+     f  +e    +t  G l    +    +++l    l +++  +++v    s++  Gq+ql+ ia+al   + ++i+de +a++ ++ t+  ++ +   +  + +c+ i+h+++ +   sd i v+  G+
  MMETSP1061-20121228|5060_1 1163 VLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLLRIVELD--SGKILIDGYDTRKIGLTKL-RSNIAVIPQDPVLFSG-TIRSNLdpfgeFPDEEvssvLTRVG-LFTTITGSTSTESLsslgLGQVQSLNDQVREGGSNFSVGQRQLLVIARALLSGASIVIMDEATAAVDAD-TDARIQKVMRSEFADATCITIAHRINTIMD-SDFILVMDSGK 1371
                  6899*************************9999887765..7*******98776666544.788*******999875.3444433223355556222145555.33322222233333222466777667777778899*****************************98765.55555555556778899*********9865.88888887776 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00021     0.013     768     817 ..     519     570 ..     443     598 .. 0.65
   2 !   13.1   0.0   4.7e-05    0.0029     200     297 ..     631     734 ..     601     803 .. 0.78
   3 !   12.9   0.1   5.1e-05    0.0032      76     269 ..    1163    1353 ..    1119    1381 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00021
   TIGR00956 768 evkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvL.ae.RvttGv 817
                  v   + ++  L+ ++  +kPG+l A++G  G Gk  Lln +  e Rv  G 
  MMETSP1061-20121228|5060_1 519 SVGSLSSNLLCLKRINFECKPGELVAVVGGVGSGKSSLLNGIlGElRVLSGN 570
                 4455555666677777777777777777777777777777430223444444 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 4.7e-05
   TIGR00956 200 tkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefv.kalkt.....saeilkatalvaiyqasqd.ayelFdkvvvlyeGkqiyfGkadk 297
                 t++G+  +  +sGG++ Rv++a ++  +a i ++D+a   +D+  a ++  +++ +     + +  ++ +++ +  a q+  +   dk++vl eG+++ +G+ ++
  MMETSP1061-20121228|5060_1 631 TEIGEKGI-TLSGGQKARVALARAVYHEADISIIDDALSAVDAHVAKHLFeECITKdllagTGNCFEKRSVILATNALQHlNHPRVDKIIVLREGRIVEQGSYKE 734
                 66776666.48********************************9997644145433111114555555555555555555167899**************99876 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 5.1e-05
   TIGR00956   76 ilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeik.khyrgdvvYsaetdvHlpsltvketLdfaa.....rlktpqnRvkgvsreeyakkladvvlaiyGLshtkntkvGndlvR....GvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyq 269 
                  +lk +d  +  g  v v+Gr g+G+stl+ s+  ++ +    +++ki  dg+++  i   ++r++++ + +  v +   t+   Ld        ++ ++ +Rv   +  +  +++ ++    +G   + n     d vR      s G+r+ + ia +l+++a+i ++D+at  +D+ t   + k+++   e+++at  ++i  
  MMETSP1061-20121228|5060_1 1163 VLKGLDIELPRGSKVGVVGRTGAGKSTLMVSLL-RIVE--L-DSGKILIDGYDTRKIGlTKLRSNIAVIPQDPVLFS-GTIRSNLDPFGefpdeEVSSVLTRVGLFTTITGSTSTESLSSLGLGQVQSLN-----DQVReggsNFSVGQRQLLVIARALLSGASIVIMDEATAAVDADTDARIQKVMRS--EFADAT-CITIAH 1353
                  555555555556666677777777777766553.2222..2.45777777777777752455666666666555554.4666666643301111345555555555544444444444333333333333.....444422113678888888888888888888888888888888888888887774..344444.344444 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   6.3e-05    0.0039     176     205 ..     541     570 ..     478     573 .. 0.70
   2 !    7.4   0.0    0.0068      0.42     176     196 ..    1175    1195 ..    1152    1199 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 6.3e-05
   TIGR03594 176 ikiaiiGrpNvGKStLvNallgeervivsd 205
                   +a++G   +GKS+L+N +lge rv+  +
  MMETSP1061-20121228|5060_1 541 ELVAVVGGVGSGKSSLLNGILGELRVLSGN 570
                 469**********************98766 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0068
   TIGR03594  176 ikiaiiGrpNvGKStLvNall 196 
                   k++++Gr  +GKStL+ +ll
  MMETSP1061-20121228|5060_1 1175 SKVGVVGRTGAGKSTLMVSLL 1195
                  689999999999*99998877 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.1    0.0011     0.071     621     655 ..     528     562 ..     495     578 .. 0.86
   2 ?    0.2   0.0      0.53        33     821     844 ..     632     655 ..     622     678 .. 0.84
   3 !    6.3   0.0    0.0078      0.49     623     654 ..    1164    1195 ..    1154    1242 .. 0.73
   4 ?    2.5   0.0      0.11       6.7     829     903 ..    1297    1367 ..    1269    1383 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0011
   TIGR00630 621 nnlkdidvsiplglltvitGvsgsGkstLindiLv 655
                   lk i+ + + g+l+++ G  gsGks+L+n iL 
  MMETSP1061-20121228|5060_1 528 LCLKRINFECKPGELVAVVGGVGSGKSSLLNGILG 562
                 4689999************************9995 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.53
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLs 844
                 ++G++  tLsGG   rv La+ + 
  MMETSP1061-20121228|5060_1 632 EIGEKGITLSGGQKARVALARAVY 655
                 578888999999999999998765 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0078
   TIGR00630  623 lkdidvsiplglltvitGvsgsGkstLindiL 654 
                  lk +d+++p g  + + G  g+GkstL+  +L
  MMETSP1061-20121228|5060_1 1164 LKGLDIELPRGSKVGVVGRTGAGKSTLMVSLL 1195
                  77788888888888888888888888877665 PP

  == domain 4    score: 2.5 bits;  conditional E-value: 0.11
   TIGR00630  829 LsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidl 903 
                  +s G  q + +a+ L     g  + i+De t+ +  d  +++ +v+++   +  t + i h ++ i  +D+i+ +
  MMETSP1061-20121228|5060_1 1297 FSVGQRQLLVIARALL---SGASIVIMDEATAAVDADTDARIQKVMRSEF-ADATCITIAHRINTIMDSDFILVM 1367
                  5556666666666664...588999*****99999887777777777655.4579999************99754 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1     0.017         1       6      26 ..     543     563 ..     541     572 .. 0.90
   2 !   12.2   0.1    0.0004     0.025       4      24 ..    1175    1195 ..    1173    1201 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.017
   TIGR00231   6 ivivGhvdvGKstLlnsllkn 26 
                 +++vG v++GKs+Lln +l++
  MMETSP1061-20121228|5060_1 543 VAVVGGVGSGKSSLLNGILGE 563
                 789*************99986 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.0004
   TIGR00231    4 ikivivGhvdvGKstLlnsll 24  
                   k+++vG+ ++GKstL+ sll
  MMETSP1061-20121228|5060_1 1175 SKVGVVGRTGAGKSTLMVSLL 1195
                  59***************9998 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.2     0.046       2.8       3      23 ..     543     563 ..     541     572 .. 0.88
   2 !   10.4   0.1     0.001     0.064       2      21 ..    1176    1195 ..    1175    1200 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.046
   TIGR00436   3 vailGrpnvGKSTLlNkllgq 23 
                 va++G    GKS LlN +lg+
  MMETSP1061-20121228|5060_1 543 VAVVGGVGSGKSSLLNGILGE 563
                 9*****************997 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.001
   TIGR00436    2 fvailGrpnvGKSTLlNkll 21  
                  +v+++Gr+ +GKSTL+ +ll
  MMETSP1061-20121228|5060_1 1176 KVGVVGRTGAGKSTLMVSLL 1195
                  79**************8886 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.2    0.0025      0.16     146     236 ..     484     567 ..     477     575 .. 0.62
   2 ?    3.5   0.0       0.1       6.5     206     230 ..    1171    1195 ..    1158    1198 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0025
   TIGR00450 146 kieelrkkllkllaevevniDyeedddeldqleevslnqklkkiiaelkdllnsrkkleklkdglklaivGktNvGKSSLlNallkkdrai 236
                 ++ee++ k+ +l ++ + n + +++++  +  + +s+   l +    lk++ n+     + k g  +a+vG +  GKSSLlN +l + r +
  MMETSP1061-20121228|5060_1 484 QLEEAEWKIKQLTSSQNNNNNNNKETTGQKLEDPESV-GSLSSNLLCLKRI-NF-----ECKPGELVAVVGGVGSGKSSLLNGILGELRVL 567
                 5555555555555555555555555554332222222.2455555555553.33.....3567889****************999877665 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.1
   TIGR00450  206 lkdglklaivGktNvGKSSLlNall 230 
                  l  g k+ +vG+t +GKS L+  ll
  MMETSP1061-20121228|5060_1 1171 LPRGSKVGVVGRTGAGKSTLMVSLL 1195
                  56799***************98877 PP

>> TIGR02524  dot_icm_DotB: Dot/Icm secretion system ATPase DotB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.036       2.2     136     160 ..     542     566 ..     521     605 .. 0.80
   2 ?    5.2   0.0     0.035       2.2     132     157 ..    1172    1197 ..    1161    1216 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.036
   TIGR02524 136 vvyvtgatgsgkstllaaiirelie 160
                 +v v g  gsgks+ll  i+ el  
  MMETSP1061-20121228|5060_1 542 LVAVVGGVGSGKSSLLNGILGELRV 566
                 6889999*************99864 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.035
   TIGR02524  132 pqegvvyvtgatgsgkstllaaiire 157 
                  p+   v v g tg+gkstl+ +++r 
  MMETSP1061-20121228|5060_1 1172 PRGSKVGVVGRTGAGKSTLMVSLLRI 1197
                  566678899**************994 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.026       1.6     182     202 ..     544     564 ..     514     570 .. 0.91
   2 ?    7.5   0.1    0.0073      0.45     182     211 ..    1178    1207 ..    1163    1215 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.026
   TIGR03819 182 lvsGgtGsGkttLLsalLalv 202
                  v+Gg GsGk +LL+ +L+++
  MMETSP1061-20121228|5060_1 544 AVVGGVGSGKSSLLNGILGEL 564
                 589***************975 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0073
   TIGR03819  182 lvsGgtGsGkttLLsalLalvaedeRivlv 211 
                   v+G tG+Gk tL+ +lL  v+ d   +l+
  MMETSP1061-20121228|5060_1 1178 GVVGRTGAGKSTLMVSLLRIVELDSGKILI 1207
                  599***************999987665555 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1      0.23        14     155     177 ..     540     562 ..     522     572 .. 0.82
   2 ?    6.4   0.0     0.015      0.94     154     184 ..    1173    1203 ..    1150    1222 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.23
   TIGR03597 155 kkdvyvvGvtNVGKSsliNkllk 177
                 ++ v vvG    GKSsl+N +l 
  MMETSP1061-20121228|5060_1 540 GELVAVVGGVGSGKSSLLNGILG 562
                 77789**************9995 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.015
   TIGR03597  154 ekkdvyvvGvtNVGKSsliNkllklnkgkkk 184 
                  ++++v vvG t  GKS+l+ +ll++ + ++ 
  MMETSP1061-20121228|5060_1 1173 RGSKVGVVGRTGAGKSTLMVSLLRIVELDSG 1203
                  378999*****************99887665 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.2     0.013      0.82       1      19 [.     542     560 ..     542     568 .. 0.88
   2 ?    4.2   0.1      0.12       7.5       2      17 ..    1177    1192 ..    1176    1202 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.013
   TIGR00152   1 iigltGgigsGKstvakil 19 
                 +++++Gg+gsGKs++++ +
  MMETSP1061-20121228|5060_1 542 LVAVVGGVGSGKSSLLNGI 560
                 69************99865 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.12
   TIGR00152    2 igltGgigsGKstvak 17  
                  +g++G+ g GKst++ 
  MMETSP1061-20121228|5060_1 1177 VGVVGRTGAGKSTLMV 1192
                  8************975 PP

>> TIGR01000  bacteriocin_acc: bacteriocin secretion accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.0    0.0021      0.13     209     278 ..     441     510 ..     422     521 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0021
   TIGR01000 209 skylslYenyqaqlkeaeekddkeqvksqilasvqqqidqLkkeiesyevqkakltksdalsassqsekl 278
                 s +++ Ye+ ++q+k+a+  ++ +      +a+ + +i+ L++++e++e ++++lt+s+++++++++e  
  MMETSP1061-20121228|5060_1 441 STVTAYYESLKQQMKDATSGQNASAQIGREIAEKDWEISLLQSQLEEAEWKIKQLTSSQNNNNNNNKETT 510
                 378999************955555556677899999***********************96555555443 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.026       1.6     126     148 ..     544     566 ..     530     579 .. 0.83
   2 ?    1.3   0.0      0.71        44      58      88 ..     743     773 ..     738     802 .. 0.86
   3 ?   -1.3   0.0       4.5   2.8e+02     127     146 ..    1179    1198 ..    1170    1213 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.026
   TIGR00157 126 vfaGqSGVGKSSLiNlldpevkq 148
                  ++G  G GKSSL+N +++e++ 
  MMETSP1061-20121228|5060_1 544 AVVGGVGSGKSSLLNGILGELRV 566
                 578999***********998865 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.71
   TIGR00157  58 ldrlLvvaeakniepiivlnkkdlleeedae 88 
                  +r+L v+e+++++p++  n+++++e+e  e
  MMETSP1061-20121228|5060_1 743 FSRFLAVIEETGVKPSMTENTIEDIEDEIPE 773
                 68***********************998655 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 4.5
   TIGR00157  127 faGqSGVGKSSLiNlldpev 146 
                  ++G+ G GKS L+  l+  v
  MMETSP1061-20121228|5060_1 1179 VVGRTGAGKSTLMVSLLRIV 1198
                  589*********98877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        90  (0.0219405); expected 4.1 (0.001)
Passed Fwd filter:                        67  (0.0163335); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              66  [number of targets reported over threshold]
# CPU time: 2.80u 0.22s 00:00:03.02 Elapsed: 00:00:01.31
# Mc/sec: 1409.56
//
Query:       MMETSP1061-20121228|5061_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-27   92.6   0.0    1.3e-26   91.4   0.0    1.5  1  TIGR00027 mthyl_TIGR00027: putative methyltransferase, TIGR00027 family


Domain annotation for each model (and alignments):
>> TIGR00027  mthyl_TIGR00027: putative methyltransferase, TIGR00027 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.4   0.0   3.1e-30   1.3e-26      17     256 ..       4     272 ..       2     275 .. 0.77

  Alignments for each domain:
  == domain 1    score: 91.4 bits;  conditional E-value: 3.1e-30
   TIGR00027  17 rpdrlvrDplAaaflsaagrlrldskleaeaeaeekelggladfvavRtrffDdflleavaag............vrqvViLgAGlDtRAyRldwpe.gtrvFEvDqpevlefKekvlkelgaeppa........hrraVavDlr...qdwpaaLaaaGfdaeaptawlaeGllvYLteeavdallafiaelsapGSrlafdvvek..ldeeelraklkkklakavr..evsvselvfgideeeveeflaer...Gwrasea.tleelarry 256
                 +++rl  Dp+A+++   +   +     +  ++  +  ++gl +++++Rt+++Dd ++  +a+g            + q+ViLgAG+DtR +Rl+  + g ++ EvDqp v++ K++vl+e+ ++ ++         +++V++D++   +++++ L+   +d+++ ++ + eG+++Y+++   +++l+++++l  +GS l++ +v++   d+  + a+ ++ ++  ++  + +++++++ ++++   efl+     G++  ++  ++el+++y
  MMETSP1061-20121228|5061_1   4 KSERLYSDPYAKYMYMGSFV-MEWMGVSKSQRLFDIFFPGLLELLTLRTKWIDDQIAIHAAQGdndsndnddgshCGQLVILGAGYDTRGFRLNTFSeGFKIIEVDQPSVQASKRRVLQEIAEHNNQvasrlkdgTVTFVPMDFNnhgDSFGETLRI-SLDSDRCAIVVLEGVTQYIPKSSTASTLKQLNNLLPKGSILLVSYVPQvlFDDPGQIAPPDSIRF-LLKgaKWAGEPWISAWNQAGFSEFLSSElcgGYEILSDsAVTELEEQY 272
                 6789**********998885.334444455777888888***************99866555444444444455589****************98777********************98766543322222222689******9776789999975.6**********************************************987666667776554432.222346788888888888888888876444477777776666776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1533.80
//
Query:       MMETSP1061-20121228|5062_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1723.86
//
Query:       MMETSP1061-20121228|5063_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.9   0.8     0.0049   14.4   0.6    1.3  1  TIGR00980 3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17


Domain annotation for each model (and alignments):
>> TIGR00980  3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.6   1.2e-06    0.0049      20      89 ..      88     161 ..      68     205 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.2e-06
   TIGR00980  20 af..amGtiGGaifqaikGfrnspkGeklvgalaaiktrapvlGg..nfavwGGlfstidcalvavrkkedPwn 89 
                 af  ++G i G++f  ++G r + + + l+ + +a+k +  + G+  + +++G +f  + c   ++r   dP +
  MMETSP1061-20121228|5063_1  88 AFggCIGSITGSVFGFMDGMRMAGQNDVLKNSSNAAKGKFLMQGTtrSATIFGAFFGGFHCIKYGIRVALDPGD 161
                 4533589999****************9888888888888888776225779****************9999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1143.91
//
Query:       MMETSP1061-20121228|5065_1  [L=775]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (775 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 2691.88
//
Query:       MMETSP1061-20121228|5064_1  [L=1281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.14s 00:00:00.70 Elapsed: 00:00:00.48
# Mc/sec: 3522.46
//
Query:       MMETSP1061-20121228|5069_1  [L=716]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 3048.52
//
Query:       MMETSP1061-20121228|5068_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 2020.45
//
Query:       MMETSP1061-20121228|5070_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 993.06
//
Query:       MMETSP1061-20121228|5066_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.49    6.3  10.0        0.6    6.0   6.9    1.1  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter
        5.6    2.2  28.7        6.4    2.0  19.9    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   6.9   0.00029       0.6     515     617 ..     135     237 ..      84     275 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00029
   TIGR00844 515 klrdkkeieddielndlgrerlqkekearaatidlstavteqlgeeigragdleerekvnikerseavntiysldklaedtenkdvtrvetsrvdgieseidd 617
                   +++ +  + +  +d ++ ++q +ke +++t+d s+ ++e+ +++ + ++++ ++e  + +++    +t +  d++++d +n +     t++   +e+   +
  MMETSP1061-20121228|5066_1 135 EEKKDTDAAEKKGKKDDAEATVQTRKEPESGTNDESSETKEESSSSEADGEKQCQDESSPTVDKPSCEETDQVKDSSSDDRKNSGHEDAATDKNTSTEAVESE 237
                 333333444444556677889*******************************************999999999999999999988888777776665432221 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0  19.9    0.0031       6.4     707     909 ..      63     275 ..      24     287 .] 0.43

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0031
   TIGR00927 707 tkkeeskdeeepaklpevtvtpapapedkgdqeedpgsqgdvaeaeak..gertgeeaeae.........teaegekdeesggeaeqegeseekaeeeseGeieae.rkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeie.aeeeGeekedede.geieak.eevevegdedeteieaeeeaevkededeGeieaeedgevkGdeg 909
                  + e+ ++e++p +  ev  +p+ ap +k  + +d gs +++a ++ k  g      +  +         + + ++++e+++++a++++++++ ae+  +   e e + +++ +e++ e+ ++e +Ge++ ++  +    ++  +e ++  + + ++ ++ ++ed  ++ +++ e+ve+e+  +  +++ + e+ vk++ +   i+a + ++ k  + 
  MMETSP1061-20121228|5066_1  63 PRPEDDEEEDDPEDT-EV-SSPTAAPSTKRRKLND-GSVEATATTKMKpkGGFFATVT--NflsgawfwsSSTAAREEEKKDTDAAEKKGKKDDAEATVQTRKEPEsGTNDESSETKEESSSSEADGEKQCQDESSPTVDKPSCEETDQVKDsSSDDRKNSGHEDAaTDKNTStEAVESETAVSADDHKENVETLVKDGAKSTAIKAPKSSQGKSSKR 275
                 333333333333332.22.3455556655555444.3333333333220022221111..12234445545555566666666666555555555555444444441333444455555555555555443332222222222222222222022222333333220122111244555555555555555555566666666666644444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1306.24
//
Query:       MMETSP1061-20121228|5067_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   28.4   0.1    1.1e-06   26.1   0.0    2.2  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.7e-10   1.1e-06      24     140 ..     231     352 ..     215     361 .. 0.78
   2 ?   -2.6   0.1      0.16   6.7e+02     143     178 ..     400     434 ..     379     444 .. 0.62

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.7e-10
   TIGR03724  24 eRvkKsYrhpelDeklrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegk.....klkdlleekel...ellkevGelvgklHkagivhgDlttsNiivkddklyliDfGLgkksk 140
                 +R +K+Y +++  +k+ k    kE r  ++++ ag++ P++++++ +  +++me + ++     +lkd+  ++++    +++++  +     + ++vhgDl   N++++++++y+iD++ +  ++
  MMETSP1061-20121228|5067_1 231 HRWRKGYCKSN-PRKMVKVWAEKELRNYRRIHAAGIPCPTPIFLKAH--ILLMEFLGENgwpspRLKDAGLREKHmreAYVQTILIMRHLYQRCKLVHGDLSEYNLLWHKSQVYVIDVSQSVETD 352
                 57777777666.46667777899******************999988..999**9976433333788875544434656666666666666688***********************98776665 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.16
   TIGR03724 143 edkavDlhvlkrslestheelaeelieaflegYkee 178
                  +   +++ l+++++ + +  ++e+ ++ +++ +++
  MMETSP1061-20121228|5067_1 400 DESTAEMNYLEETMKEVETS-FKEMSSKTEQERRKN 434
                 44455556666666655555.555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       340  (0.0828864); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2828.34
//
Query:       MMETSP1061-20121228|5073_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       379  (0.092394); expected 82.0 (0.02)
Passed bias filter:                      245  (0.059727); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 808.97
//
Query:       MMETSP1061-20121228|5072_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   15.1   0.0      0.021   12.5   0.0    2.2  2  TIGR02008 fdx_plant: ferredoxin [2Fe-2S]


Domain annotation for each model (and alignments):
>> TIGR02008  fdx_plant: ferredoxin [2Fe-2S]
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   5.1e-06     0.021      36      56 ..     180     200 ..     136     214 .. 0.72
   2 ?   -0.5   0.0     0.057   2.3e+02      70      80 ..     248     258 ..     240     267 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.1e-06
   TIGR02008  36 lpyscraGacstcaGkvkeGt 56 
                 +p  cr G c tc+G + +G 
  MMETSP1061-20121228|5072_1 180 IPSDCRRGNCLTCTGTLLSGG 200
                 6888************98875 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.057
   TIGR02008  70 leegyvltcva 80 
                  e+gy+ltc +
  MMETSP1061-20121228|5072_1 248 RERGYLLTCST 258
                 5789*****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|5077_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|5071_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-12   45.6   0.1    1.1e-12   45.6   0.0    3.0  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
    9.8e-11   39.3   1.2    2.2e-10   38.1   0.7    1.3  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    6.8e-07   27.0   0.0    1.1e-06   26.3   0.0    1.2  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    3.8e-06   24.6   0.0    3.8e-06   24.6   0.0    2.0  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    0.00017   18.3   0.1    0.00017   18.3   0.1    1.9  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    0.00036   17.2   0.0    0.00036   17.2   0.0    1.9  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
      0.002   14.5   0.1      0.002   14.5   0.0    2.5  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      0.003   14.4   0.0     0.0042   13.9   0.0    1.4  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.5   5.7         8   4.1e+03      36      68 ..     113     145 ..     105     167 .. 0.47
   2 !   45.6   0.0   2.1e-15   1.1e-12     215     301 ..     208     294 ..     195     313 .. 0.87
   3 ?  -10.1  14.6         8   4.1e+03      51      93 ..     314     356 ..     290     386 .. 0.38

  Alignments for each domain:
  == domain 1    score: -7.5 bits;  conditional E-value: 8
   TIGR01622  36 dRersrskerdrdfdrrdrdrdkyrdrerrsrk 68 
                 dR+r+r+ + dr+      dr ++ +  rr r+
  MMETSP1061-20121228|5071_1 113 DRDRGREDHHDRRGPPGGYDRGPPDGYDRRGRH 145
                 333333333344332223333333333333332 PP

  == domain 2    score: 45.6 bits;  conditional E-value: 2.1e-15
   TIGR01622 215 nsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvte 301
                 + i+   L v n+   it+q+L + F   Ge+ +v +++D ++ ++kG+ Fi++ d e+a+eA  ++  + + G e+ v +a++  +
  MMETSP1061-20121228|5071_1 208 EGIPGISLLVRNIGPHITNQDLGNAFGRIGEVRDVYIPRDYHSQQAKGFAFIEYADPEQAREARDEMDRFRIKGCELEVVFAQERRK 294
                 467888999***********************************************************************9987543 PP

  == domain 3    score: -10.1 bits;  conditional E-value: 8
   TIGR01622  51 rrdrdrdkyrdrerrsrkrreserererekerrredevrrkrk 93 
                 r +rdr+   +r++r+r++++++ +++++++ +++++  +  +
  MMETSP1061-20121228|5071_1 314 RNHRDRSSSFERHQRRRRDNSNSNHHHHHNSSNNNKNGGSDDR 356
                 2345555555554444444444444444443222111111111 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.7   4.3e-13   2.2e-10     181     375 ..     215     303 ..     198     348 .. 0.58

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 4.3e-13
   TIGR01628 181 lYvKnlddsvtedklrelFakfGeitSaivkkd.eknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqf 375
                 l v+n+ +++t++ l + F++ Ge+  + + +d ++++++gfaf++y+++e+A++A +e++  +i+                                                                                                           g  L v +Aq + +  ++++ + 
  MMETSP1061-20121228|5071_1 215 LLVRNIGPHITNQDLGNAFGRIGEVRDVYIPRDyHSQQAKGFAFIEYADPEQAREARDEMDRFRIK-----------------------------------------------------------------------------------------------------------GCELEVVFAQERRKSPNEMRGRV 303
                 456666667777777777777777776666666234555667777777777777777777766666...........................................................................................................33333333333332222222222 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.1e-09   1.1e-06     269     347 ..     212     291 ..     202     295 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.1e-09
   TIGR01661 269 gycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktn 347
                 g  ++v n+ p   ++ l   fg+ G v++v i rd+++++ kG++f+  ++ ++a  a   ++ +++ +  l v+f  +
  MMETSP1061-20121228|5071_1 212 GISLLVRNIGPHITNQDLgNAFGRIGEVRDVYIPRDYHSQQAKGFAFIEYADPEQAREARDEMDRFRIKGCELEVVFAQE 291
                 678899999999666666599***********************************999999999999999999999766 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   7.4e-09   3.8e-06     190     262 ..     209     281 ..     203     300 .. 0.84
   2 ?   -3.7   3.8         3   1.6e+03      52     104 ..     311     359 ..     304     370 .. 0.65

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 7.4e-09
   TIGR01659 190 sikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeg 262
                  i    l v n+   it+++l   fg+ g++ +  i rd ++ + +g af+ +   e+a+ea   ++    +g
  MMETSP1061-20121228|5071_1 209 GIPGISLLVRNIGPHITNQDLGNAFGRIGEVRDVYIPRDYHSQQAKGFAFIEYADPEQAREARDEMDRFRIKG 281
                 56667899*****************************************************987776665555 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3
   TIGR01659  52 sssrsrrrgyndfsgaggssaatlgsvgnlanaastnslnslgsggsddndtr 104
                 + +r++r  +  f+  +     +  s  +    +s+n  n    ggsdd++++
  MMETSP1061-20121228|5071_1 311 GGGRNHRDRSSSFERHQRRRRDNSNSNHHHHHNSSNNNKN----GGSDDRKGD 359
                 5578888888888888887777766766666656666666....556664433 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   1.4       2.3   1.2e+03     486     508 ..      19      42 ..      10      76 .. 0.48
   2 !   18.3   0.1   3.4e-07   0.00017      42     127 ..     186     282 ..     181     331 .. 0.74

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 2.3
   TIGR01648 486 asaavreakstpaeyqlrtlg.vr 508
                 a+aa + a++t+a++  +  + v+
  MMETSP1061-20121228|5071_1  19 AAAAAEAARTTTARHSAKRAAaVP 42 
                 334445555555554443333122 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 3.4e-07
   TIGR01648  42 kyGGPPPg.....yegaqPer.....GcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpG 127
                   GGPPP       +  +P r     G  ++v  i   + + +l   f ++G++ ++ +  d  + + +G+af+ +++ e+a+ea  e++ + i+  
  MMETSP1061-20121228|5071_1 186 GRGGPPPPhrggrNDRNKPRRdegipGISLLVRNIGPHITNQDLGNAFGRIGEVRDVYIPRDyHSQQAKGFAFIEYADPEQAREARDEMDRFRIKGC 282
                 5677777623333334455555555567778888888888888888888888888888888844566788888888888888888888888888644 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.5   4.8         8   4.1e+03     295     330 ..      20      51 ..      11      78 .. 0.54
   2 !   17.2   0.0     7e-07   0.00036     205     274 ..     217     286 ..     211     291 .. 0.89

  Alignments for each domain:
  == domain 1    score: -6.5 bits;  conditional E-value: 8
   TIGR01645 295 aaaavaaaaatakitaaeavag......aavlglraqspata 330
                 aaaa aa + ta+  a+ a+a                  ata
  MMETSP1061-20121228|5071_1  20 AAAAEAARTTTARHSAKRAAAVplppvpP----------ATA 51 
                 33344444455555555555553322220..........222 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 7e-07
   TIGR01645 205 vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrv 274
                 v  + p ++++dl   f   Ge+ +  + r+  +++ kGf f+e+++ +   ea   m+ f + G  l v
  MMETSP1061-20121228|5071_1 217 VRNIGPHITNQDLGNAFGRIGEVRDVYIPRDYHSQQAKGFAFIEYADPEQAREARDEMDRFRIKGCELEV 286
                 77888999999999999999999999999**999999********9999999999999999988876665 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.2   3.6         8   4.1e+03      31      61 ..     114     124 ..     107     151 .. 0.47
   2 !   14.5   0.0   3.8e-06     0.002     438     491 ..     230     280 ..     222     295 .. 0.68
   3 ?   -8.6  16.2         8   4.1e+03      13      62 ..     315     367 ..     289     386 .. 0.40

  Alignments for each domain:
  == domain 1    score: -8.2 bits;  conditional E-value: 8
   TIGR01642  31 rsrdRdRdrrdrrrsrrkdsRdRdrrrydsr 61 
                 r+r R                      +++r
  MMETSP1061-20121228|5071_1 114 RDRGR--------------------EDHHDR 124
                 22222....................111111 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 3.8e-06
   TIGR01642 438 keeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFe 491
                  + +++ G++ ++ iPr     ++ +  G  F+eyad ++a+ Ar+e++  + +
  MMETSP1061-20121228|5071_1 230 GNAFGRIGEVRDVYIPRD---YHSQQAKGFAFIEYADPEQAREARDEMDRFRIK 280
                 556777888888888887...444455566788888888888888888654444 PP

  == domain 3    score: -8.6 bits;  conditional E-value: 8
   TIGR01642  13 rerdrdkskeRsRkRsrdrsrdRdRdrr...drrrsrrkdsRdRdrrrydsrs 62 
                  +rdr  s eR+ +R+rd+s++   +++   + ++    d+R+ d  +  s +
  MMETSP1061-20121228|5071_1 315 NHRDRSSSFERHQRRRRDNSNSNHHHHHnssNNNKNGGSDDRKGDAGSDGSDR 367
                 23344445555555555555555444442111112222233333322222211 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   8.2e-06    0.0042     296     373 ..     210     291 ..     142     347 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8.2e-06
   TIGR01649 296 glgsVllvsnLeeekvtpdalFnlfgvYGdvervkilk.....nkketalvemadpqqaqlalthLdkvklfgkklrvavSkq 373
                  +g  llv n+ + ++t + l n fg  G+v+ v i +     + k+ a++e+adp+qa  a + +d+ ++ g +l+v+ +++
  MMETSP1061-20121228|5071_1 210 IPGISLLVRNIGP-HITNQDLGNAFGRIGEVRDVYIPRdyhsqQAKGFAFIEYADPEQAREARDEMDRFRIKGCELEVVFAQE 291
                 4566789999986.588899**************99752222256899*****************************987754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 1964.61
//
Query:       MMETSP1061-20121228|5074_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-05   20.9   0.0    3.3e-05   20.9   0.0    1.1  1  TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
     0.0052   13.9   0.0     0.0073   13.4   0.0    1.3  1  TIGR00661 MJ1255: conserved hypothetical protein
     0.0085   13.0   0.1      0.012   12.5   0.1    1.1  1  TIGR01426 MGT: glycosyltransferase, MGT family


Domain annotation for each model (and alignments):
>> TIGR01133  murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   2.4e-08   3.3e-05     239     310 ..      69     142 ..       4     158 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 2.4e-08
   TIGR01133 239 ekieefidn.dmaaaykaadLvIsRAGAstvaElaavglPaili.PypsaaddqyyNakeledagaglvleqke 310
                  +i+++ ++  ++a ++ adL++s AGA+tv E++ ++   i +      +++q++ a ++ d +  l++++ +
  MMETSP1061-20121228|5074_1  69 LEIQTYDFRpSLMADMERADLILSHAGAGTVMEVLRMKKTLIVViNTDLMDNHQTELAGAMADRKHLLMVPEPK 142
                 46788888888999*********************999999876133333466666666666666666666555 PP

>> TIGR00661  MJ1255: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   5.4e-06    0.0073     241     277 ..      80     116 ..      67     139 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 5.4e-06
   TIGR00661 241 fkedlksaeavitsGGfelisEALalgkpllvvPvlg 277
                 +  d++ a++++++ G  +++E L ++k l+vv   +
  MMETSP1061-20121228|5074_1  80 LMADMERADLILSHAGAGTVMEVLRMKKTLIVVINTD 116
                 66799**************************997665 PP

>> TIGR01426  MGT: glycosyltransferase, MGT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   8.6e-06     0.012     290     318 ..      84     112 ..      77     129 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8.6e-06
   TIGR01426 290 LekadllvtHgGmnstmealaagvPlvav 318
                 +e+adl+++H+G++++me l  +  l++v
  MMETSP1061-20121228|5074_1  84 MERADLILSHAGAGTVMEVLRMKKTLIVV 112
                 689*****************988777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1017.42
//
Query:       MMETSP1061-20121228|5078_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1480.42
//
Query:       MMETSP1061-20121228|5079_1  [L=732]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.42
# Mc/sec: 2300.38
//
Query:       MMETSP1061-20121228|5084_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.8   0.1      0.029   12.0   0.0    1.4  1  TIGR00022 TIGR00022: uncharacterized protein, YhcH/YjgK/YiaL family


Domain annotation for each model (and alignments):
>> TIGR00022  TIGR00022: uncharacterized protein, YhcH/YjgK/YiaL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     7e-06     0.029      36     107 ..     183     254 ..     165     262 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7e-06
   TIGR00022  36 eGrveidGdrifmnvieleteeavakkaElHerYlDiqlll...kgeEkiavgtspenasvseeyleekdiqlla 107
                  G +e +G+ +f++ i++ + +++++ +E H+  l iq l+   + +Ek+a+    +  + + e +  +d++l++
  MMETSP1061-20121228|5084_1 183 FGMHESEGKGLFIRNIKDSSLDYTVNYMEQHKSKLTIQALImelRKKEKVAL--RAGVLR-QGEMKRRQDVELFS 254
                 599***********************************88621134455444..444444.47888888888874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1642.10
//
Query:       MMETSP1061-20121228|5081_1  [L=780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.68
# Mc/sec: 1513.99
//
Query:       MMETSP1061-20121228|5086_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1145.32
//
Query:       MMETSP1061-20121228|5085_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 1074.77
//
Query:       MMETSP1061-20121228|5083_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.5    2.5   7.1        6.4    2.1   4.9    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   4.9    0.0016       6.4     963     990 ..     277     304 ..     256     308 .. 0.52

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0016
   TIGR00927 963 kGvdgeggsdGGdseeeeeeeeeeeeee 990
                  G  g+gg+d G +  ee  eeeeeeee
  MMETSP1061-20121228|5083_1 277 AGSGGGGGGDAGGAAAEEVVEEEEEEEE 304
                 2444555555555555544444434333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1283.89
//
Query:       MMETSP1061-20121228|5087_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 418.92
//
Query:       MMETSP1061-20121228|5089_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 710.23
//
Query:       MMETSP1061-20121228|5094_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 1060.63
//
Query:       MMETSP1061-20121228|5093_1  [L=1062]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.56
# Mc/sec: 2459.17
//
Query:       MMETSP1061-20121228|5095_1  [L=1489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.14s 00:00:00.75 Elapsed: 00:00:00.54
# Mc/sec: 3639.48
//
Query:       MMETSP1061-20121228|5098_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.14s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 208.40
//
Query:       MMETSP1061-20121228|5098_2  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|5097_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1972.07
//
Query:       MMETSP1061-20121228|5100_1  [L=1404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-11   40.0 164.5    9.1e-06   21.5  21.1    5.7  5  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.64    5.4 182.6      0.016   10.7  33.6    6.2  5  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   2.1    0.0014       2.9     378     453 ..      54     129 ..      25     139 .. 0.49
   2 !   21.5  21.1   4.4e-09   9.1e-06     672     907 ..     279     513 ..     264     523 .. 0.55
   3 !    8.8  15.5     3e-05     0.062     709     963 ..     555     807 ..     546     821 .. 0.68
   4 !   15.8  17.8   2.3e-07   0.00047     241     505 ..     796    1056 ..     791    1061 .. 0.84
   5 !   14.0  36.4   7.8e-07    0.0016     682     983 ..    1055    1347 ..    1038    1368 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0014
   TIGR02168 378 eeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeelee 453
                 e+el  lr++v + e+++++ln+++ r+++el  ++e+ +r++q ++   +   + ++e+  l+++l++++  ++e
  MMETSP1061-20121228|5100_1  54 EDELVLLRRRVEAYERREQKLNKDIVRIKKELDFSKENASRWQQAVHMDVRPGAHYRKEIILLKQKLNQKDDIIQE 129
                 3333344444444444455555555555555555555555544444444444444444444444444444444333 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 4.4e-09
   TIGR02168 672 ssilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieel....eeeleeleeeleellkekasleealaelreeleelseelre 907
                 + ++e  +e+ + ++e + +  k+++ e+elk+l++e+++ +       +++++++++ls+ k  l+ +e +++ ++  l++ ++ +++l++e ++ ++++ +++  +++ e++   +++ei +lk++l+++  +l+++ + +te+++++++++++l+  e++  ++++ l   +e++e+ + e+ + e++i++l    +e++++l++e+e+l++  + ++ ++++l+++l+  +ee  +
  MMETSP1061-20121228|5100_1 279 KRVMELHNELGKRTKENDSMRHKLEQSENELKQLRTEFRNPAL----QSEKIKNMSTELSKSKLALHDAELKSKDYATALNHHKEMIADLKAELKKRDSAIFDLT-MKERNETNFSLQQDEIGDLKRALSESLVELENATKVVTEQRQTIHDLKKKLNAKEEDYVQVQRFLGVETENLENVQRELLRKESKINDLctfkSENEKKLSNEIEHLKNLLRLRDGEMKNLKKNLHLSQEENPN 513
                 3334444555555555555555555555555555555555442....2233334455566666666666666666666666666666666666666666666663.44556666666666666666666666666666666666666666666666666666666666666666666666666666666666665111122333444445555555555555555555554444444333 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 3e-05
   TIGR02168 709 leeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaal.ekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerl..seeyeleleeaeelee 963
                 +e+l+++ e+l ++l+ ++ +l+ ++k l + e+e  +l++ l++l+++l+ +e+ + +le +++++++e+ +  ++ + el++++++  ++++a+ e+l+ l++ ++   +e ++++ r++ ++++ +++  +++ e+  +  ++ ++  + +a+ ++ +      e++l+ l++    ++ + ++l ++le++s++l++++ +++e++  + +l +++++ ++ l + ++   +lqe+l  ++e+  el++ae+l++
  MMETSP1061-20121228|5100_1 555 QESLKKQNEDLMEKLNLQSIQLHTTDKILVEKEQEKARLKSSLDRLRSKLNTFEADKFALEMRITKEKDEIiSDLNTMRGELKSSLKKKASDHDAIMEDLQVLKRHIKVNARESTDLRARVNPITDNFSSQyDQRFSETIGKGIDMGDSKIEFRARRNNHSV----EESKLKGLEELS--SSDECQSLVSKLESTSQSLHQMNIHIREKNCIIARLLHSIEESRQCLYNERAWHGHLQEQLiiKDEQIAELQAAENLKN 807
                 677888888888999999999999999999999999999999999999999999999999999999998887778888889999999999999999999999999999888888888888888887765541444554444444444444444444444444....355555555555..3455666666666666666666666666666666666666666666655555555555554224445555555555544 PP

  == domain 4    score: 15.8 bits;  conditional E-value: 2.3e-07
   TIGR02168  241 leeleeelkeaeeelee.leaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleg 505 
                  ++el+++++ +++ +++  +++ +  ee++e l +ek++l ++l ++q++l   +++is+le+++e + + +++ + e+e l e+  +l++++   e++l+ ++++ +  ++e   l++e+ + + e+e l++ +++l + +++  ++ a+ +  +  l+++  +l +el++l e+ +      +e+ek+l+e ++e++ l++++ e++e  +e++  ++r+e+  +e++  l++++ +  ++e+ +a lq++++  + l+ ++++
  MMETSP1061-20121228|5100_1  796 IAELQAAENLKNDVVRTpFTDKTDLHEEKIELLSKEKENLADSLYAAQNALRVKANTISNLESQLETIFADMKDQRCEKEVLFEKYSQLDERNRIVEQKLDVSRKNADVYANETRHLQEEIVRTNCEIEPLKKYVTTLLDLINDGGNDAAAEKTLIHGLKKTRLELVTELNSLLENSQAV----HEREKELDERTNEIAILKRTIVEVKENVTETKYFRDRTEN-INEKDPPLDKVSMRALSYEKLVADLQKEIRRSRCLMAENSE 1056
                  5555555444444433314666777899****************************************************************************************************************************************************6544....4455566777789999999999999998888766665554.44447788888888888888888888887776666666655 PP

  == domain 5    score: 14.0 bits;  conditional E-value: 7.8e-07
   TIGR02168  682 eeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerla.qlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkrleeki 983 
                  +el++e   ++e+++e++ e++el+k+l +l+++ ek+ + ++ele + +++++++ + e+++ +l+ + +  ++  +++l+++r+  +ee++ +++ l++ ++ ++++e+ ++q  e++ +l+++l ++e+ +++l +e+++++ +   +++  ++ + eleel++++ e + ++ +  +e ++l+ +l+e + e+e+   e +sl  ++++l+++ + ls+ ++el+ ++  le++ +  + kl ++elr +++e+  a+l++++++   le e+    e   e e ++++++lk+le  +
  MMETSP1061-20121228|5100_1 1055 SELKKENGFITEQFEEISIEVQELSKKLANLTTANEKISSLKKELEAAKESENEKVTSYERQISALTMNKDvTIDTLRKDLAASRSRSAEEVARLTSDLSKLQQSKTSNEDMMRQKAERVRELERTLHAQEKTVESLGSELSQAKIN---MRNMSEQRRIELEELQKELIESKSRAMNQDREYTSLTVKLDECKLEHEK---EIKSLGDEIERLKKD-SVLSKAVKELQGNNLMLEAKQRLEQLKLVNMELREDNIEMA-AKLEKAFAKIRGLEEETQIGSEM--EGEYNNLRQQLKDLEGLL 1347
                  444555555555555555555555555555555555555555555555555555555555555555443331334444555555555555555555555555555555555555555555555555555555555555555543322...3333333344444444444444444444444444444444433333222...222334444555555.67777777777777777777777777777777777777764.45666666666666666666655..677777777777777544 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.8   9.4       1.5   3.1e+03     675     838 ..      55     220 ..      35     241 .. 0.36
   2 ?    8.0  24.8   4.9e-05       0.1     669     904 ..     273     516 ..     262     524 .. 0.50
   3 ?   -3.4  22.0      0.14   2.9e+02     672     938 ..     557     836 ..     546     846 .. 0.54
   4 ?    9.4  28.4   1.9e-05     0.038     674    1040 ..     721    1083 ..     691    1085 .. 0.78
   5 ?   10.7  33.6   7.6e-06     0.016     675     940 ..    1083    1356 ..    1079    1369 .. 0.62

  Alignments for each domain:
  == domain 1    score: -6.8 bits;  conditional E-value: 1.5
   TIGR02169 675 eklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieel..eeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqe 838
                 ++l  lr+r+e+ er +++l +++ ri+k+ld  ++++s+ ++ ++   +   + ++e   lk++l+++ + ++e e  + +  +  +  +  + e   + + +     l+d+ +  +  ++e++  e     + +++ ++ ++ +  +ln+le+++ +++++   
  MMETSP1061-20121228|5100_1  55 DELVLLRRRVEAYERREQKLNKDIVRIKKELDFSKENASRWQQAVHMDVRPGAHYRKEIILLKQKLNQKDDIIQEREITIDNLMAGNHPTHPFLVEHpdNPETSVCSSLLDDIGETPQVREMERLLVENATCIHRLRERDEDVKRLRMKLNQLEQDRIYMKQNEIL 220
                 3444444444444444444444444444444444444444444444444444444444444444444444444433333333333322222222221001122222222333333333333333332222222333333333333333333333333333222222 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 4.9e-05
   TIGR02169 669 vsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeee...eklkerleeleeklseleeeleekkeelkeleaei......eeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelek 904
                 +s++  +++ +l+++l++  +e +s++++l++ e++l++l+ + ++   + e+i++   +l++++   + ++ + ++ ++ l++ +e +++ k+elk+ ++ i      e+ e + +  ++++ dl++ lse+ + e+e+ ++ + e+++ i+   ++++a+ ++  + + +l  e ++l++ ++el  ++++i++       + ++l++e+e+l++ +r  + e k+Lkk+ +  ++e  +++k
  MMETSP1061-20121228|5100_1 273 DSVRMTKRVMELHNELGKRTKENDSMRHKLEQSENELKQLRTEFRNPALQSEKIKNMSTELSKSKlalHDAELKSKDYATALNHHKEMIADLKAELKKRDSAIfdltmkERNETNFSLQQDEIGDLKRALSESLV-ELENATKVVTEQRQTIHDLKKKLNAKEEDYVQVQRFLGVETENLENVQRELLRKESKINDLCTFKSENEKKLSNEIEHLKNLLRLRDGEMKNLKKNLHLSQEENPNIKK 516
                 444555555566666666666666666666666666666666655544444444333333333330003333344555555555666666666666655555422111122222333345555555555554433.3444455555555555555555555555555555566666666666666666666666655555555555666666666666666666666666666555555555554 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 0.14
   TIGR02169 672 sekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerl........eeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelek.leeevsriearleeieaelnkle...lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekk.rkrlkelkaklealeeelsele 938
                 s k++ e l e+l+    +l++  + l + e++   l+s+l++ + k+++ e++  +le +  k+k+++         el+++l++   +  +  e l+ l+ +i+   ++  +l++ ++ + ++ s++  ++ +e + k ++   s+ie r++  ++++++++   le+ + ++e q l+++ e + +  ++++ +i e +  ++ l + +ee ++ +++ ++ +++L+++    ++++ el+ +++  +  + +   ++    ++k+e l++e ++l 
  MMETSP1061-20121228|5100_1 557 SLKKQNEDLMEKLNLQSIQLHTTDKILVEKEQEKARLKSSLDRLRSKLNTFEADKFALEMRITKEKDEIisdlntmrGELKSSLKKKASDHDAIMEDLQVLKRHIKVNARESTDLRARVNPITDNFSSQYDQRFSETIGKgIDMGDSKIEFRARRNNHSVEESKlkgLEELSSSDECQSLVSKLESTSQSLHQMNIHIREKNCIIARLLHSIEESRQCLYNERAWHGHLQEQLIIKDEQIAELQAAENLKNDVVRTPfTDKTDLHEEKIELLSKEKENLA 836
                 3344444444444444444444444444444444444444444444444444444444444444433321111000133444444444444444455555566666666666677777777777666665555555553325555666666666655555554422455666777888888888888888888888888888888888888999888888888889999988777777777766665544433333213334444455555555555555 PP

  == domain 4    score: 9.4 bits;  conditional E-value: 1.9e-05
   TIGR02169  674 keklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkee...lkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkkelekveeeleaLepvNmkAieeYeevekrldelkekrekLeeErkelleriee.lekkkrevFm.eaFeainenfkeifaeLs 1040
                   + le+l+       +e +sl s+l++  + l++++ ++++ +  i ++ + +e+ ++   ++++    l+e+l   +e+++e ++    ++++       + +l++ k +l + e+e   + +   ++ l+   +++s++e++le i a++++++ eke+l e+  +l e+++ +e++ +  +k+ +    + ++l+ee+ +++ +++ L++    L   +++  ++  + +  ++ l+ +  +  ++l++l ++ +a++e+ +el+e   + +e++  + ++ +vk+++ + +    + e++N k     ++v  r  ++++  + L++E +  + +++e  e kk + F+ e Fe+i+ + +e+ ++L+
  MMETSP1061-20121228|5100_1  721 LKGLEELSS-----SDECQSLVSKLESTSQSLHQMNIHIREKNCIIARLLHSIEESRQCLYNERAWHGHLQEQLIIKDEQIAELQAAenlKNDVVRTPFTDKTDLHEEKIELLSKEKENLADSLYAAQNALRVKANTISNLESQLETIFADMKDQRCEKEVLFEKYSQLDERNRIVEQKLDVSRKNADVYANETRHLQEEIVRTNCEIEPLKKYVTTLLDLINDGGNDAAAEKTLIHGLKKTRLELVTELNSLLENSQAVHEREKELDE---RTNEIAILKRTIVEVKENVTETKYFRDRTENINEKDP-PLDKVSMRALSYEKLVADLQKEIRRSRCLMAEnSELKKENGFItEQFEEISIEVQELSKKLA 1083
                  222222221.....24455677777777777777777777776666665555555555555555555555555555555544443320003333333345567888888888888999999999999*********************************************************************************************************************************************8...56777777889999999999999999999****9976.6899999**************9766666555505555556675479*****99999988886 PP

  == domain 5    score: 10.7 bits;  conditional E-value: 7.6e-06
   TIGR02169  675 eklerlrerleeLereleslqselrriekrldelssklsdae.kkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekie......eieeelekleeevsriearleeieaelnklele.kell...eeeiqelqeeieeleeqkkeiekeieelkak..leeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleee 940 
                  ++l   +e++ +L++ele++++   + ++++ ++++++s+ + +k  +i   ++ l++++++++e+++ l ++ls+l++ ++ +++++ + ++++ ele++l++ ++ +e+l  els+ ki+      + + ele+l++e+ + ++r+ + ++e  +l+++  e     e+ei+ l +eie l++    + k+++el+++  + e +++le+l+    eL+e   +++++ e++ a++r le++  ++ +e+e + ++l+++ + le l e+++ ++++
  MMETSP1061-20121228|5100_1 1083 ANLTTANEKISSLKKELEAAKE---SENEKVTSYERQISALTmNKDVTIDTLRKDLAASRSRSAEEVARLTSDLSKLQQSKTSNEDMMRQKAERVRELERTLHAQEKTVESLGSELSQAKINmrnmseQRRIELEELQKELIESKSRAMNQDREYTSLTVKlDECKlehEKEIKSLGDEIERLKKDSV-LSKAVKELQGNnlMLEAKQRLEQLKLVNMELREDNIEMAAKLEKAFAKIRGLEEET-QIGSEMEGEYNNLRQQLKDLEGLLEDNARIKSQ 1356
                  4445556666666666666554...444555555555555541334456666667899999999***********************************************99999998875221111333456777777777777777777777777733122220113444444444444444333.33344444333114566667777777777777777777777777777777777654.455566666666666666666666666666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       459  (0.111897); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.53u 0.18s 00:00:01.71 Elapsed: 00:00:01.03
# Mc/sec: 1799.15
//
Query:       MMETSP1061-20121228|5103_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-15   54.7   0.0    6.6e-15   53.9   0.0    1.5  1  TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
    0.00055   17.9   0.0    0.00091   17.2   0.0    1.5  1  TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase


Domain annotation for each model (and alignments):
>> TIGR00560  pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   3.2e-18   6.6e-15       2     114 ..      94     201 ..      93     271 .. 0.87

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 3.2e-18
   TIGR00560   2 kipnklTlvRiialpllillllenvlslqvslliggllfliaavtDylDGylARkyklvsnfGkllDPlaDkvlvlavliilvykglvpallliviiaRelv.isglRvlaaek 114
                  ipn +T++R+++ p+l  +++    + +  l igg+  l+a v+D lDGy+A+ + + + +G  lDP+aDk  +++    l y g++pa l+++  +++++ ++g+  +++ +
  MMETSP1061-20121228|5103_1  94 SIPNIITISRLASTPILCYWVV----NDEPYLAIGGC--LLAGVSDVLDGYIAKNHGQNTVLGTYLDPFADKFFINSLAASLWYSGILPAPLVCLWASKDVLlLGGMGWYLYRE 201
                 79*****************999....33445566666..579***************************************************999999965156666665554 PP

>> TIGR00473  pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   4.4e-07   0.00091      28      70 ..     127     169 ..      86     189 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.4e-07
   TIGR00473  28 llslilDslDGrvArktntvskfGkelDSlaDvvsFGvaPall 70 
                 ll+ ++D lDG++A+  ++   +G  lD +aD        a+l
  MMETSP1061-20121228|5103_1 127 LLAGVSDVLDGYIAKNHGQNTVLGTYLDPFADKFFINSLAASL 169
                 677899**************************76555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1286.89
//
Query:       MMETSP1061-20121228|5105_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 560.95
//
Query:       MMETSP1061-20121228|5107_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 455.96
//
Query:       MMETSP1061-20121228|5104_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 3045.53
//
Query:       MMETSP1061-20121228|5106_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1710.78
//
Query:       MMETSP1061-20121228|5113_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.39
# Mc/sec: 470.42
//
Query:       MMETSP1061-20121228|5102_1  [L=719]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.26
# Mc/sec: 3650.01
//
Query:       MMETSP1061-20121228|5110_1  [L=1076]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-36  123.2   0.0      3e-27   93.5   0.0    2.7  2  TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF


Domain annotation for each model (and alignments):
>> TIGR02110  PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   0.0   7.3e-31     3e-27       7     210 ..      55     277 ..      51     447 .. 0.85
   2 !   26.7   0.0   1.2e-10   4.7e-07     627     696 ..     836     906 ..     778     907 .. 0.88

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 7.3e-31
   TIGR02110   7 ngLrvaLvHdpaakraAAllRVaAGShdepsawPGLAHlLEHLlFlGterfqgderLmawvqrqGGqvNAsTlerttdfFFelpaealaaGleRLcemLarPlltvedqqrEreVleAEyia.lsadadarreaa.lldalsaahplrrFraGsrdsl...........alen....aalQqALrdFhrryYqA..eqmqLwLqGPQsLeeLeeLAarfgasl 210
                 n+L+v L+ dp+ ++a A + +  G +   +  PG+AH+LEH+lF+Gt ++++++   +++   GG+ NA T   +t ++F++  e l + l R  +    Pl++  + +rE++ ++ E+   l +d     ++       ++ hp+  F  G+++sl           ++en    + + + L dF+++yY    +  +L+  G  sLe+Le++  r+  +l
  MMETSP1061-20121228|5110_1  55 NKLQVLLISDPETDKASAAMDIGIGQFCDGKHLPGIAHFLEHMLFIGTTKYPDENAYDSYLNSYGGSSNAYTDLEHTCYYFDVQVESLEGALDRFAQCFIDPLFSKGALEREVQAVDSEHAKnLMQDTWRTYQLSkSKLVENSDHPYGSFGSGNAESLptvvassndddGKENddsgTHIREQLVDFFHTYYRKslDLYKLVVLGKESLEDLEAMVGRYFVEL 277
                 79*********************************************************************************************************************9641333333333333033445789*************95555443322211222222468899999*****9862246799999*********9999987665 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 1.2e-10
   TIGR02110 627 tadvaseAAlRlLaqlletaFyqRLRvelQlGYavfsrvrrvad.rdGLllavQSPdasaaellqhikaFl 696
                   d++s   l l aql+  + +  LR e QlGY v + ++  +d ++GLll +QS +  ++++ + i+ Fl
  MMETSP1061-20121228|5110_1 836 ALDLESNSTLALFAQLIREPAFNQLRTEEQLGYIVHTSLKTSGDhVKGLLLLIQSDSFDPDHVEERIEVFL 906
                 558899999********999999*****************9998479**********99999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1076 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.23s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 3302.80
//
Query:       MMETSP1061-20121228|5114_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-51  171.8   0.0    1.9e-51  171.4   0.0    1.1  1  TIGR00576 dut: dUTP diphosphatase
    2.5e-06   25.2   0.0    3.3e-06   24.7   0.0    1.2  1  TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase


Domain annotation for each model (and alignments):
>> TIGR00576  dut: dUTP diphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.4   0.0   9.1e-55   1.9e-51       3     142 ..      91     226 ..      89     227 .. 0.98

  Alignments for each domain:
  == domain 1    score: 171.4 bits;  conditional E-value: 9.1e-55
   TIGR00576   3 kvvklseeatlPerategaaGlDlraaldeltiapgeralvktglaielpeglearvapRSglalkhgvvilnsaGviDadYrgeikviliNlgkedftvekgdriaqlvvekvvkeveleeveeleetergegGFGstG 142
                  v+klse+atlP r++e +aG+Dl+a+   +ti++g+r++v+t+l+i+ p g++ar+apRSgla+k+g  i+ +aGv+DadYrg ++v+l+Nlg+edf v+kgdriaql++ek+   + +eev++l+eterg+gGFGstG
  MMETSP1061-20121228|5114_1  91 LVKKLSEDATLPVRGSEWSAGFDLSASRP-ATIPAGGRKIVHTDLSIACPPGTYARIAPRSGLAVKKG--IDCGAGVVDADYRGPVGVVLFNLGEEDFVVNKGDRIAQLILEKISM-APVEEVKDLTETERGAGGFGSTG 226
                 689**************************.7*************************************..**********************************************.669******************** PP

>> TIGR02274  dCTP_deam: deoxycytidine triphosphate deaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   1.6e-09   3.3e-06      73     157 ..     121     204 ..      96     216 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.6e-09
   TIGR02274  73 vikpgefvLatTlEyvklpddvvavvegrSsla.RlGllihvtagiidpGfeGnitlelvnagklpvkLrpgmriaqlvFaklssp 157
                  i++g   ++ T  +++ p+   a++  rS la ++G+   +  g++d+ ++G + + l+n g+    + +g riaql+++k+s  
  MMETSP1061-20121228|5114_1 121 TIPAGGRKIVHTDLSIACPPGTYARIAPRSGLAvKKGIDCGA--GVVDADYRGPVGVVLFNLGEEDFVVNKGDRIAQLILEKISMA 204
                 5666666677788889999999**********9667876666..*************************************99864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1445.88
//
Query:       MMETSP1061-20121228|5115_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.6    4.5   8.4        7.1    3.9   4.5    1.9  2  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.019        76      32      69 ..      45      62 ..      13     103 .. 0.54
   2 ?    3.9   4.5    0.0017       7.1      20      48 ..     111     139 ..     108     170 .. 0.46

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.019
   TIGR03593 32 ppaaaqqaesqsaaaaaaasaaaaasadapsaaaaaaa 69
                p++++ ++++++++                    +++a
  MMETSP1061-20121228|5115_1 45 PKQKKHAVAATTNH--------------------TKDA 62
                22222211111111....................1111 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0017
   TIGR03593  20 awqkdpkpepqkppaaaqqaesqsaa..aaa 48 
                  w + p++ +  pp ++qq+e+q+++  ++a
  MMETSP1061-20121228|5115_1 111 RWRRAPPKRA--PPSTEQQQEQQQQQqqQQA 139
                 5666644443..2222222222222211111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 752.34
//
Query:       MMETSP1061-20121228|5112_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.19s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 2326.78
//
Query:       MMETSP1061-20121228|5116_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 2507.79
//
Query:       MMETSP1061-20121228|5119_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 309.89
//
Query:       MMETSP1061-20121228|5122_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 478.46
//
Query:       MMETSP1061-20121228|5118_1  [L=894]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 3687.45
//
Query:       MMETSP1061-20121228|5121_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 2166.82
//
Query:       MMETSP1061-20121228|5125_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 494.96
//
Query:       MMETSP1061-20121228|5124_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1415.88
//
Query:       MMETSP1061-20121228|5123_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1036.11
//
Query:       MMETSP1061-20121228|5129_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 1775.85
//
Query:       MMETSP1061-20121228|5128_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   11.8   0.4      0.083   10.7   0.3    1.6  1  TIGR02497 yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR02497  yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.3     2e-05     0.083       8      39 .]     528     558 ..     525     558 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2e-05
   TIGR02497   8 QkalmqatvqvdLvAKvaGalSQavnKLvnmQ 39 
                 +k  +q+ +q++   Kva a+SQ+v++ + mQ
  MMETSP1061-20121228|5128_1 528 SKTISQSKIQEEIAHKVA-AMSQSVDTITGMQ 558
                 677889999999777776.9***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 2715.20
//
Query:       MMETSP1061-20121228|5130_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 967.92
//
Query:       MMETSP1061-20121228|5133_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|5134_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 506.84
//
Query:       MMETSP1061-20121228|5135_1  [L=1033]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-20   69.2   7.1    3.6e-19   66.2   1.1    3.3  3  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
      2e-07   28.2   3.3    0.00012   19.0   0.0    3.1  3  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
      2e-06   24.9   0.4      0.052   10.4   0.0    3.0  3  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    2.5e-06   24.2   0.3    9.7e-06   22.2   0.0    1.9  2  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    1.1e-05   22.0   0.0    2.9e-05   20.6   0.0    1.6  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
     0.0013   16.2   0.0      0.004   14.7   0.0    1.8  2  TIGR01387 cztR_silR_copR: heavy metal response regulator
     0.0059   13.7   0.0     0.0095   13.0   0.0    1.3  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A
  ------ inclusion threshold ------
        7.3    4.8   8.0       0.61    8.3   0.1    2.9  4  TIGR02976 phageshock_pspB: phage shock protein B


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.27   1.4e+02     456     499 ..     478     520 ..     462     526 .. 0.72
   2 !   66.2   1.1   7.1e-22   3.6e-19     497     673 ..     614     829 ..     605     853 .. 0.86
   3 !    3.4   0.0    0.0066       3.4     700     822 ..     902    1026 ..     879    1032 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.27
   TIGR02956 456 eAeeAnrAKSaFLAtmSHEiRTPlnGvlGTleLLadtkLtseqq 499
                 +A++A +        + HE+R Pl   +  ++ L+ t+L+ + +
  MMETSP1061-20121228|5135_1 478 NANKAAQTERELNDFLAHEVRNPLSAAMAATQFLR-TELNRRNK 520
                 45555555555555567*******99999999987.56666555 PP

  == domain 2    score: 66.2 bits;  conditional E-value: 7.1e-22
   TIGR02956 497 eqqkylqvinrSGesLldiLnDiLDySkiEaGhlsiserafdl.skLledvlhlmesraqe.......kgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGsvvlrvsl...ndds...............................llfeVeDtGvGiaeeeqetlFkaftqaegrkksgGTGLGLAiskrlveamdgelsveSelgkG 673
                 + ++++qv+ +  + + d+L  +LD  +    +l+++  + dl + +le +  +++ + ++        ++q++++ +e++  ++++D  r++Qv+ Nl  N++KF ++G ++lr ++   nd                                 +++ VeD+G Gi+ e+qe+lF+ +++  +   s+GTG+GL ++k lve+m+ge+s++ + + G
  MMETSP1061-20121228|5135_1 614 QAREDIQVVDHALHFINDLLRNMLDMNRAASKKLKVKLAPADLlQDILEPIAGMLHRGGENigggngeSKVQIIVDCPENM--TVETDILRLKQVILNLSRNSVKFINEGFIRLRAEVvelNDSDddwslsshdtysktfdieanhygssrffkstVRIYVEDSGSGIPIEKQENLFNKYQESLDLL-SQGTGIGLHLCKTLVELMGGEISLDTTYDSG 829
                 4578899999999999999999*****99999999999999963678888888988766542222222679*******887..5899***************************965511144437899***************************************************9988877.89***********************998877 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.0066
   TIGR02956  700 pparvLlvEDNevnamvaqglleklGhk..vtlaesgksAlecleekaFDlallDinLpDtdGvtLlkqLkeleeake.elkfiavsAhvfnedvekylaagFdgflaKPlsek..qLvatlakileg 822 
                  ++++vL v+D ++  ++ +  ++       +  a++g+ A    +e++FDl++ D+ ++ ++   L  +  + + a+  + ++ ++sA+   +   ++l+ag d+fl KP++ +     +tl ++l g
  MMETSP1061-20121228|5135_1  902 KSLKVLFVDDDRILRKLFTRTIKTVAPDwvIREAANGETAILLAKEEHFDLIFCDMYMASVEKQLLGTETVAEMRANGiKSRICGLSAN---DKEMEFLEAGSDAFLFKPMPCDatAVRKTLHNVLYG 1026
                  3459999999999888877777777654113468899999999999************9999877765544444443425778899984...666789***********9975411455666666655 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.3   0.00052      0.27     237     278 ..     482     524 ..     465     534 .. 0.78
   2 ?   -1.7   0.1      0.45   2.3e+02     337     372 ..     684     721 ..     620     733 .. 0.73
   3 !   19.0   0.0   2.4e-07   0.00012     384     445 ..     766     824 ..     761     829 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00052
   TIGR01386 237 afqrlsqFsadlAHelRtPltnLltqtqvaLsr.eRsgeeyre 278
                 a q   + ++ lAHe+R Pl+  ++ tq++    +R ++ yr 
  MMETSP1061-20121228|5135_1 482 AAQTERELNDFLAHEVRNPLSAAMAATQFLRTElNRRNKSYRG 524
                 55556667788*****************986543788888886 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.45
   TIGR01386 337 vslkveg..eaevegdaqlfrRalsNLlsNAlrytpeg 372
                 v++ v+   + +ve d + ++ ++ NL  N +++  eg
  MMETSP1061-20121228|5135_1 684 VQIIVDCpeNMTVETDILRLKQVILNLSRNSVKFINEG 721
                 55555441157888888889999999999999997665 PP

  == domain 3    score: 19.0 bits;  conditional E-value: 2.4e-07
   TIGR01386 384 devevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaes 445
                 ++v++ ve+ g+gip e+ + lF+++    ++    ++gtG+GL +++ +ve+ gGe++ + 
  MMETSP1061-20121228|5135_1 766 STVRIYVEDSGSGIPIEKQENLFNKY---QESLDLLSQGTGIGLHLCKTLVELMGGEISLDT 824
                 6899********************86...677788999********************9876 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.12        63      83     131 ..     458     503 ..     445     525 .. 0.76
   2 !   10.4   0.0    0.0001     0.052     193     252 ..     666     724 ..     590     746 .. 0.75
   3 !   10.3   0.0   0.00011     0.056     260     326 ..     766     829 ..     760     831 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.12
   TIGR02966  83 rvlevrivpygeeelllvarDvtklkrleqmRrdFvanvsHELrtPLtv 131
                 r++++   + + e+  lv+    k  ++e+  +dF+a   HE r PL+ 
  MMETSP1061-20121228|5135_1 458 RTYSTLKSRAAAERNALVLENANKAAQTERELNDFLA---HEVRNPLSA 503
                 455555556667777788899999999********98...******986 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0001
   TIGR02966 193 elleelkkeaealseekehqielevdaavkvkgdeeeLrsalsNLveNAikytpeggeit 252
                  +l++  +++   + e ++qi +++ ++++v+ d  +L++++ NL  N +k+ +eg  i+
  MMETSP1061-20121228|5135_1 666 GMLHRGGENIGGGNGESKVQIIVDCPENMTVETDILRLKQVILNLSRNSVKFINEG-FIR 724
                 455555556666678899**********************************8876.354 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00011
   TIGR02966 260 egaelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkG 326
                 +++++ v+D+G GI+ e+ + l+ ++   ++s    + GtG+GL + k  +e   +e++++ +  +G
  MMETSP1061-20121228|5135_1 766 STVRIYVEDSGSGIPIEKQENLFNKY---QESLDLLSQGTGIGLHLCKTLVELMGGEISLDTTYDSG 829
                 56899************999998876...788888999***************99999998887766 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       0.3   1.5e+02     560     604 ..     683     726 ..     677     734 .. 0.77
   2 !   22.2   0.0   1.9e-08   9.7e-06     610     671 ..     766     829 ..     761     838 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.3
   TIGR02916 560 kprievsvdkdlevradrerlervlghLvqNAleATeeeGkVkir 604
                 k +i v+  ++++v++d  rl++v+ +L  N +   + eG + +r
  MMETSP1061-20121228|5135_1 683 KVQIIVDCPENMTVETDILRLKQVILNLSRNSVKFIN-EGFIRLR 726
                 5677788889999999999999999999999886543.4555555 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 1.9e-08
   TIGR02916 610 eaavieieDsGqGmseeFirerLFkPFdttKk...aGmGiGvyesreyveelGGeieveStpgkG 671
                 ++++i +eDsG+G++ e  +e LF+ ++ +     +G GiG++ ++ +ve +GGei+++ t   G
  MMETSP1061-20121228|5135_1 766 STVRIYVEDSGSGIPIEK-QENLFNKYQESLDllsQGTGIGLHLCKTLVELMGGEISLDTTYDSG 829
                 6789*************9.9********99755569**********************9998777 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   5.6e-08   2.9e-05     421     485 ..     765     829 ..     758     833 .. 0.94
   2 ?   -4.1   0.0       1.8   9.1e+02     230     275 ..     956     999 ..     947    1003 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.6e-08
   TIGR02938 421 ddlirveiedsGPGiPadlrlkvfePffttkassrkhvGmGlavaqeivakhaGlidvdddyreG 485
                 +  +r+ +edsG GiP + + + f+ +  +   + ++ G+Gl   + +v   +G i++d+ y  G
  MMETSP1061-20121228|5135_1 765 KSTVRIYVEDSGSGIPIEKQENLFNKYQESLDLLSQGTGIGLHLCKTLVELMGGEISLDTTYDSG 829
                 6789**********************************************************998 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 1.8
   TIGR02938 230 dsffaaaekryllltiddiselrkkqedarlsalkallaeeeklea 275
                 d ++a+ ek+  ll  + ++e+r +  ++r+ +l a   e e lea
  MMETSP1061-20121228|5135_1 956 DMYMASVEKQ--LLGTETVAEMRANGIKSRICGLSANDKEMEFLEA 999
                 5566666554..6788999999999999999999998888777765 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       1.5   7.8e+02      88     130 ..     307     351 ..     306     367 .. 0.75
   2 !   14.7   0.0   7.7e-06     0.004       2     102 ..     907    1010 ..     906    1028 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.5
   TIGR01387  88 GlelGaddylvkpfefaellarvrtllrrseskest..vleiadl 130
                 G+ l  dd    p +f+ ++  +  l++r+  ++++   ++i dl
  MMETSP1061-20121228|5135_1 307 GVRLSQDDETSWPRDFSSIVLCISDLMKRAALHQDKkvSVHIHDL 351
                 566677888888999999999999999998766555124556665 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 7.7e-06
   TIGR01387    2 lvvedeqktaeylqqGl..sesGyvvdivsnGrdGlhlaekddydliildvmlpgld....GwevlkalresaketpvllltardevadkvkGlelGaddylvkpfe 102 
                  l v+d++   + +++ +  +   +v+  ++nG+  + la+++++dli  d+ +  ++    G e + ++r ++ +  +  l+a+d+    +  le G+d +l kp+ 
  MMETSP1061-20121228|5135_1  907 LFVDDDRILRKLFTRTIktVAPDWVIREAANGETAILLAKEEHFDLIFCDMYMASVEkqllGTETVAEMRANGIKSRICGLSANDK---EMEFLEAGSDAFLFKPMP 1010
                  5666666666666665511345699999***********************9987654455999************9999*99986...67899***********85 PP

>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.9e-05    0.0095       2     114 ..     903    1014 ..     902    1029 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.9e-05
   TIGR02875    2 kirivivddnkefvellkeylaaqedlevvGvaknGvealelikekkpdvvvldiimpyldG.lgvleklaeielk.akpkvlllsavGqekitkravelGadyyvlkpfdleil 114 
                   ++++ vdd++ + +l+   + +     v+  a nG  a+ l ke++ d++  d+ m  ++  l   e +ae++ +  k ++  lsa  +e      +e G+d ++ kp+  +  
  MMETSP1061-20121228|5135_1  903 SLKVLFVDDDRILRKLFTRTIKTVAPDWVIREAANGETAILLAKEEHFDLIFCDMYMASVEKqLLGTETVAEMRANgIKSRICGLSANDKE---MEFLEAGSDAFLFKPMPCDAT 1014
                  57999****************9999999*****************************9987425556788777654268999999998777...47899999*999999865544 PP

>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.1         8   4.1e+03       5      16 ..      67      78 ..      61      93 .. 0.55
   2 ?   -3.8   0.0       7.2   3.7e+03      51      70 ..     172     191 ..     168     192 .. 0.76
   3 ?    0.3   0.1      0.36   1.9e+02      55      72 ..     251     268 ..     250     271 .. 0.87
   4 ?    8.3   0.1    0.0012      0.61       4      41 ..     431     468 ..     429     486 .. 0.78

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 8
   TIGR02976  5 flaiPlivfvif 16
                +++  li+ ++f
  MMETSP1061-20121228|5135_1 67 IVIFGLIAGIVF 78
                334444444444 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 7.2
   TIGR02976  51 akrleeRidtLEriLdeesp 70 
                 a + +  i  LEr L+e+++
  MMETSP1061-20121228|5135_1 172 AMQFDPNITNLERPLAEDEA 191
                 56666678899**9999987 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.36
   TIGR02976  55 eeRidtLEriLdeespnw 72 
                 e Ri ++E++  +e p  
  MMETSP1061-20121228|5135_1 251 ETRIRAVEALFSTERPSL 268
                 68************9976 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.0012
   TIGR02976   4 fflaiPlivfvifvallwlllhyrskrktaaslstddl 41 
                  ++ i l++f++fval   +++  ++++t ++l +  +
  MMETSP1061-20121228|5135_1 431 IVVFIGLLIFLAFVALAVWVVANDRRNRTYSTLKSRAA 468
                 578899999******98777777779998888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1033 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.61u 0.16s 00:00:00.77 Elapsed: 00:00:00.73
# Mc/sec: 1867.74
//
Query:       MMETSP1061-20121228|5136_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-64  214.2   0.0    5.6e-64  213.7   0.0    1.2  1  TIGR00191 thrB: homoserine kinase
    1.8e-10   38.4   0.0    1.7e-05   22.1   0.0    2.3  2  TIGR01920 Shik_kin_archae: shikimate kinase
    1.3e-07   29.3   0.0      1e-06   26.3   0.0    2.0  2  TIGR00549 mevalon_kin: mevalonate kinase
  ------ inclusion threshold ------
      0.022   11.2   0.0      0.037   10.5   0.0    1.3  1  TIGR02902 spore_lonB: ATP-dependent protease LonB


Domain annotation for each model (and alignments):
>> TIGR00191  thrB: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.7   0.0   5.5e-67   5.6e-64       1     292 [.     138     432 ..     138     444 .. 0.90

  Alignments for each domain:
  == domain 1    score: 213.7 bits;  conditional E-value: 5.5e-67
   TIGR00191   1 lkvkvPassANlgpGfDvlGlalslvlellvtedvaqeskdksleaegegvekipkesdkNliyqvakkvlkklgkrvkpvkltvekeiplgrGLGSSaaaivaaviaanelaglkl...skeelldlalllEgHpDNvapallGGlqlavkedd..llevlkvPsgsklkvvlviPnievsTaeaRavLPkaysrqdlvfnlshlavlvtAlvskdkadllaiamkDrvhqpyRe.kliPelteikqaakekgalgitlSGaGptilalaeeek.eekaqelleklakegieltvkvl 292
                 ++v+vPa+sAN+gpG+D++G+a+ l  e++v  + + ++   +++aegeg+e +pk+ d N +   +k  ++  +k ++p+k +v + ip +rGLGSS+aaiva+++a+  lag  l     e ll++a  +EgHpDNvap + GG+ql +++    l+e ++ P  + l++++ iP +  +T +aR+vL   ++r+++ fn  ++a lv+A+ ++ + d l+  ++D++hqp R  kl+  l  + +aa+++ga  + lSGaGpt++al++    ++ aq+ +e++   + ++ +++ 
  MMETSP1061-20121228|5136_1 138 VTVRVPATSANVGPGYDCIGIAVDLWSEVTVSRVPEGDTVGFEITAEGEGAEAMPKD-DTNYLVVGCKAAFDAANKPLPPLKYHVVSRIPYARGLGSSSAAIVAGIVAGLVLAGHRLpcwGSEALLQIAAGIEGHPDNVAPVIYGGIQLGIHNGSrwLTERISNP--PGLQCIIFIPDFIGKTSDARGVLDDTVTREEAAFNIGRAAFLVHAFETN-NLDNLRWGVQDKLHQPQRGgKLYKYLYPMIEAAEKAGACCSYLSGAGPTVMALTSGAAgDIFAQREKERTDILVAKAMIQCA 432
                 689******************************777777777***************.66666666777889999999*******************************999988763335789******************************96666666666..9************************************************.9*****************647888888999************************9998778888888887777777666665 PP

>> TIGR01920  Shik_kin_archae: shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.7e-08   1.7e-05      20     111 ..     159     258 ..     154     352 .. 0.62
   2 !   14.1   0.0   4.8e-06     0.005     219     255 ..     377     413 ..     368     427 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.7e-08
   TIGR01920  20 gidLkveakvrlsd..geakvslkvreee..el...dpe.lierilealieklgikegleveveseiPagsGLksSsAlvnAlvlavlkakgeeiddiei 111
                 ++dL+ e++v+  +    ++ ++++++e    +   d++ l+  + +a+         l+++v s iP + GL sSsA+++A + a l ++g++++ +  
  MMETSP1061-20121228|5136_1 159 AVDLWSEVTVSRVPegDTVGFEITAEGEGaeAMpkdDTNyLVVGCKAAFDAANKPLPPLKYHVVSRIPYARGLGSSSAAIVAGIVAGLVLAGHRLPCWGS 258
                 667776666655443224555555555431122111222123333333333333334799********************************99987754 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 4.8e-06
   TIGR01920 219 lepaekalekGAavaglsGkGPsyvalteepeeevae 255
                   ++e a+++GA +  lsG GP ++alt+    ++ +
  MMETSP1061-20121228|5136_1 377 YPMIEAAEKAGACCSYLSGAGPTVMALTSGAAGDIFA 413
                 557999*****99999***********9987655544 PP

>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   9.9e-10     1e-06      16     116 ..     152     252 ..     149     271 .. 0.68
   2 ?    0.3   0.0     0.081        83     250     268 ..     379     397 ..     374     399 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 9.9e-10
   TIGR00549  16 gepAiaaaiealttvtvieeskeisl...ieselgrkslakvsqelskllesyiaavlskleekkeaalkveieseipigaGLGSSAavavaliaalaalfgse 116
                 g++ i++a+++   vtv+   ++ +      ++ g++  a +++ ++ l+     a+++++++  ++ lk+++ s ip+ +GLGSS a +va i a + l+g+ 
  MMETSP1061-20121228|5136_1 152 GYDCIGIAVDLWSEVTVSRVPEG-DTvgfEITAEGEGAEAMPKDDTNYLV-VGCKAAFDAANKPLPP-LKYHVVSRIPYARGLGSSSAAIVAGIVAGLVLAGHR 252
                 67789999999999999984443.33231333333344444444555545.5666677777777776.*****************9999999888877777754 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.081
   TIGR00549 250 lvelarkagalgaKlTGaG 268
                 ++e+a+kaga  + l+GaG
  MMETSP1061-20121228|5136_1 379 MIEAAEKAGACCSYLSGAG 397
                 899***************9 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.6e-05     0.037      68     125 ..     285     343 ..     271     365 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.6e-05
   TIGR02902  68 iGqeeGikalkaalcGpnpqhviiyGppGvGktaaarlvleeakksaaspfke.eakfv 125
                 +G ++G + l   +  p     ii+ p  +Gkt+ ar vl+++ + +++ f+   a+f+
  MMETSP1061-20121228|5136_1 285 LGIHNGSRWLTERISNPPGLQCIIFIPDFIGKTSDARGVLDDTVTREEAAFNIgRAAFL 343
                 577889999999999999999*************************9999985156665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2220.25
//
Query:       MMETSP1061-20121228|5137_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.2e-132  437.7   0.0   9.8e-132  437.5   0.0    1.1  1  TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase
    3.6e-20   69.9   0.0    1.8e-19   67.6   0.0    1.9  1  TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase


Domain annotation for each model (and alignments):
>> TIGR01356  aroA: 3-phosphoshikimate 1-carboxyvinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  437.5   0.0  4.8e-135  9.8e-132       1     413 [.      91     514 ..      91     516 .] 0.95

  Alignments for each domain:
  == domain 1    score: 437.5 bits;  conditional E-value: 4.8e-135
   TIGR01356   1 geikipgsKSishRalllaaLaegetvvtnlLkseDtlatlealrklGakveee.keelviegvgg.lkepe....aeldlgnsGttaRlltgvlalasgevvltgdeslkkRPierlveaLrelgaeieskeeegslPlaisgp.lkggivelsgsaSsQyksalllaaplalqavtleivgeklisrpyieitLkllksfgveveeede....rkivvkggqkykqk.evevegDaSsAafflaaaaitgeevtvenlgenstqgdkaiiivLeemGadveveeqrdveveg..asklkgvkvdidvdsliDelptlavlaafAegetriknieelRvkEsdRiaaiaeeLeklGveveeledgllieGkk.kelkg.avvdtydDHRiamalavlglaaegeveiedaecvaksfPeFfevleqlg 413
                 g +++pgsKS+s+R lllaaL++g+t+v+nlL+s+D++++leal  l + v ++  e+++++g++g ++ p+      l lgn+Gt++R+l ++l + +g++vl+g +++++RPi +l++ L++lgae+ + ee+g++P++i+++ lkgg   +sg++SsQ++s+ll+a p+ + +v ++i + +lis py+ +t+ l+k+fgv+ve e +     ++++ + +ky ++ ++ vegDaSsA++f+a aaitg++vtv+++g++s qgd+a+++v+e+mGa+v++  + +++v++  + +lkgv+  +d+ +++D+++tlav+a+fA+g+t+i+n+ ++R+kE++R++ai++e +klG++vee+ed+++i++ + +++++   ++tydDHR+am ++++++    +v+i+d++c+ak+fP +f++le++ 
  MMETSP1061-20121228|5137_1  91 GTVTLPGSKSLSNRCLLLAALSDGDTRVDNLLESDDIRYMLEALDTLKVPVDKHsSESVTVTGQAGpINSPSpeenLDLFLGNAGTAMRPLAAALCMGQGKFVLDGVPRMRERPIADLIDGLQQLGAEVTCVEETGCPPVTINAKgLKGGEASISGKMSSQFLSSLLMASPVVDGDVVIKIKD-ELISAPYVALTIGLMKKFGVNVEIEGSmdgqPTFKIAQSEKYSSPgSILVEGDASSASYFIAGAAITGGTVTVRGCGSESVQGDVAFADVMEQMGATVTWGPE-SITVTRdpSVQLKGVD--VDCGKIPDAAMTLAVAALFADGPTTIRNVYSWRLKETERMKAIVAECTKLGAKVEEFEDYCIIHPPEnNKINDnVLIETYDDHRMAMTFSLAACGGV-NVIINDPGCTAKTFPTYFDMLESIA 514
                 789*************************************************666********999866666666567889***************999**********************************************9999**********************999999888888.***********************998887777999**999988888*********************************************************.7999986777888888..******************************************************************99888885789******************98.**********************986 PP

>> TIGR01072  murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.0   8.8e-23   1.8e-19       3     349 ..      80     442 ..      78     487 .. 0.81

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 8.8e-23
   TIGR01072   3 kleveGgkkleGevkvsgaKNaalpilvaslLaeeevtlknvPeleDvktllellrelGakveleeneeleikas..einktevpyelvrkmRasilvlGpllar..fgkakvslpGGcaiGaRpvdlHlkglkklGaeieiedgv....vkakaeklkgaeivld.kvsVgatenillaavlaegetvie...NaalepeivdlaellnkmGakik..g..agsstieieGvekLkg.vehsvipDrieagtflvaaavtrgevlvknvkpehle...avlkklkeiGveveveensieveakk.kelkavdietkpyPgFptDlqaqfmallsqaeGtsvitetvfenRlmhveeLkrmgaeikle 349
                 +l+v+  k+l+G+v+  g+K    ++l+ + L++ ++++ n+ e  D++ +le l +l + v+ + +e+++++ +   in+ + + +l   +  + +++ pl a   +g+ k  l G   + +Rp+   + gl++lGae++  +++    v+++a++lkg e  +  k+s     ++l+a+ +++g +vi+      + p +  ++ l++k G++++  g  +g+ t +i  +ek ++  +  v  D   a+ f+  aa+t+g+v+v+    e ++   a++++++++G++v+   +si+v+++   +lk+vd++  + P    D   ++++ +  a+G + i+ +v++ Rl+  e +k + ae++  
  MMETSP1061-20121228|5137_1  80 TLTVTPIKSLDGTVTLPGSKSLSNRCLLLAALSDGDTRVDNLLESDDIRYMLEALDTLKVPVDKHSSESVTVTGQagPINSPSPEENLDLFLGNAGTAMRPLAAAlcMGQGKFVLDGVPRMRERPIADLIDGLQQLGAEVTCVEETgcppVTINAKGLKGGEASISgKMSSQFLSSLLMASPVVDGDVVIKikdELISAPYVALTIGLMKKFGVNVEieGsmDGQPTFKIAQSEKYSSpGSILVEGDASSASYFIAGAAITGGTVTVRGCGSESVQgdvAFADVMEQMGATVTWGPESITVTRDPsVQLKGVDVDCGKIP----DAAMTLAVAALFADGPTTIR-NVYSWRLKETERMKAIVAECTKL 442
                 68899999*******************************************************9998888887551156666655666666677778899998862257899***************************99755533355888999***999888548999999**************9973335678899************98762233356789********8762677888999999999999**************99998655799*******************9985367899999986655....9999999999********97.69999987666655555554432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.25
# Mc/sec: 2724.26
//
Query:       MMETSP1061-20121228|5138_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.1e-103  342.2  17.6   1.1e-102  341.9  12.2    1.1  1  TIGR00801 ncs2: uracil-xanthine permease
    1.9e-75  252.0  18.5    1.2e-55  186.7   3.1    3.1  3  TIGR03173 pbuX: xanthine permease
    3.2e-16   56.9  20.7    5.4e-11   39.7   4.5    3.2  2  TIGR03616 RutG: pyrimidine utilization transport protein G


Domain annotation for each model (and alignments):
>> TIGR00801  ncs2: uracil-xanthine permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.9  12.2  8.3e-106  1.1e-102       3     415 .]      43     544 ..      41     544 .. 0.94

  Alignments for each domain:
  == domain 1    score: 341.9 bits;  conditional E-value: 8.3e-106
   TIGR00801   3 pllqtlvlglqhllamfaavvlvpllvgaal.......lsaeelqylvsisLlvsGigtllqllrtkvv.............iglpsvlgssfafvt.....pviaissglgveaalgaliatglvvallellikklgsrllkklfpPvVtGpvvmlIGlsLipvavkdaaggeaaassn..............................efgslenlllallvlaliillerfakgllksisvliGlvvGyilalalg.....lvdfssvkeapwfslpklltfglsfeleailtllavaivvlvesiGdltaladvsrrelsg...dkrlkrgvladGlatllaglvgstPvttfaqniGvialTrvasrlvivvaavilvvlGlvpkiaalisaIPsaVlGGaslllFgvvaasGirilirakldlrrnrliiaaSvalglgvtlvpdifskla...........................llesgialagivailLnli 415
                 pll ++++glqh lam ++++++pl+v +         +  + + y vs +L++sGi t+l +  + +              +g++sv+g+sf+f         +++ +g++  +a+g +++t +v++llel+++ l ++ lkk+fpP+Vt ++v+lIG+ L ++++k ++gg   + +                                +g++++++l++ v+++ i++e f++ ++k+i ++++l++Gy++a +       +v+++++k+a  +++ ++ tf++ f+++a+l++l+++++++ve++Gd+ a+ + s++e      d+ +++g+ladG++++la+l++s+P+ttf+qn+GvialT++asr ++++++ +l+ +G+++k+a+ i++IP  VlGG++++lF+ v+asGi +   ++l++rrnr+++a S+alg+gvt  p  f +                             +l++g +++   a+lLn i
  MMETSP1061-20121228|5138_1  43 PLLMSIFMGLQHCLAMVGGLITPPLVVFKFTvcgfaesFCPDLVGYAVSAALITSGICTILNVAKLAIPfseklfgrtlylgSGVLSVMGTSFTFLPiyeiaIAQMKRDGIDGREAYGKMLGTNMVCCLLELGLSILPAKRLKKIFPPLVTSITVILIGVALTGTGMKYWGGGV-VCAEMgwkshsqitsqedlsfpppfptcaigetseLYGAPQYIGLGFSVMVFLIFIELFGSVFMKNINIILALLFGYMIAGLTDldgknYVNTDNIKNADPITFLWVETFPIGFYAPAVLPMLIAYFITTVETVGDINAVFEGSELETGTdeyDESIQGGLLADGVNSFLASLFTSMPNTTFSQNNGVIALTKCASRRAGYACGAWLIFFGVFGKVAGTITTIPDCVLGGMTIFLFSNVLASGINLTKLVDLESRRNRFVMAFSLALGVGVTVWPYAFLDRRgspytaafwpcadcsdamkglrngvsiFLSTGYCIGSASAMLLNSI 544
                 677899*******************9865333332236788999*******************999988889999********************776666699999999***************************************************************9.776668999*************************99*********************************************99888888********************************************************999878899*************************************************************************************************************************99977668888889999999999999988888888888888888888888865 PP

>> TIGR03173  pbuX: xanthine permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   3.9     2e-22   2.7e-19       1     145 [.      50     222 ..      50     232 .. 0.79
   2 !  186.7   3.1   9.1e-59   1.2e-55     135     377 ..     244     494 ..     239     496 .. 0.93
   3 !    2.7   0.0    0.0069       9.5     375     407 .]     514     546 ..     508     546 .. 0.91

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 2e-22
   TIGR03173   1 lglqHvlamyagavavpliv......agalglskeelayLisadllvaGiatliQllgvg............kvGirLpvvqGvsfaavapm.iaiga........kkglsaifGavivaglvvlllapf.fsklvklfppvVtGtvilliGlsLlpvainsaaggegakefg 145
                 +glqH lam++g +++pl+v      + a ++  + + y +sa+l+++Gi t++ + ++             ++G++++ v+G+sf+++ +  iai++        ++++++++G+ +v  l++l l+ +  ++l+k+fpp+Vt + ++liG++L   ++++++gg   +e+g
  MMETSP1061-20121228|5138_1  50 MGLQHCLAMVGGLITPPLVVfkftvcGFAESFCPDLVGYAVSAALITSGICTILNVAKLAipfseklfgrtlYLGSGVLSVMGTSFTFLPIYeIAIAQmkrdgidgREAYGKMLGTNMVCCLLELGLSILpAKRLKKIFPPLVTSITVILIGVALTGTGMKYWGGGVVCAEMG 222
                 69****************9944444345566778889999**************987643222222222222799*************9875477777776665555559***************999874789********************************9665555 PP

  == domain 2    score: 186.7 bits;  conditional E-value: 9.1e-59
   TIGR03173 135 aaggegakefgslknlllallvlvvilllsrfakgflksiavllglvvGtvvAlllg.....mvdfskvaeaallalpkplkfglptfdlaailslllvalvslveatGdllAlseivgkkiee....kelarglradglasllgglfnsfpltsfsqNvGlvqltgvksrkvvaaagviLvllGllPklaalvasiPapVlGGaalvmfgmvaaaGirilskvdfkerknllivavslglglgvtlvpell 377
                 +a ge+++ +g ++ ++l++ v+v++++++ f++ f+k+i ++l+l++G+++A l++      v+ +++++a+ +++  + +f +  f   a+l++l+ ++++ ve++Gd+ A+ e ++ +  +    +++++gl+adg++s+l++lf+s+p+t+fsqN+G+++lt+ +sr + +a+g++L+ +G++ k+a  +++iP+ VlGG+++ +f+ v a+Gi+  + vd+++r+n +++a sl+lg+gvt+ p ++
  MMETSP1061-20121228|5138_1 244 CAIGETSELYGAPQYIGLGFSVMVFLIFIELFGSVFMKNINIILALLFGYMIAGLTDldgknYVNTDNIKNADPITFLWVETFPI-GFYAPAVLPMLIAYFITTVETVGDINAVFEGSELETGTdeydESIQGGLLADGVNSFLASLFTSMPNTTFSQNNGVIALTKCASRRAGYACGAWLIFFGVFGKVAGTITTIPDCVLGGMTIFLFSNVLASGINLTKLVDLESRRNRFVMAFSLALGVGVTVWPYAF 494
                 6678999***********************************************98522233699***********999999988.9***************************8765544433234499********************************************************************************************************************999765 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.0069
   TIGR03173 375 ellkelpelvklllssgivlgaivAillnllln 407
                 +++k l + v+++ls g ++g+ +A+lln +l+
  MMETSP1061-20121228|5138_1 514 DAMKGLRNGVSIFLSTGYCIGSASAMLLNSILP 546
                 678889999********************9985 PP

>> TIGR03616  RutG: pyrimidine utilization transport protein G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   4.3   1.5e-07   0.00021      21     164 ..      36     210 ..      20     221 .. 0.69
   2 !   39.7   4.5   3.9e-14   5.4e-11     244     397 ..     330     486 ..     262     495 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.5e-07
   TIGR03616  21 vaiderlplaktlvlglqhavamfgatvlapl.................lmgldanlaillsgigtll........ff.......litggrvpsylgssaafvgvv.iaatgyngqginpnia..lalggiiacglvyaviglvvmkvgtrwierlmppvvtgavvmaiglnlapiavk 164
                    de lpl  ++ +glqh++am g  +  pl                 l+g+    a++ sgi t+l        f        l  g  v s +g+s++f+ +  ia++ ++  gi+   a    lg  ++c l+   +gl ++   ++ +++++pp+vt   v++ig+ l+   +k
  MMETSP1061-20121228|5138_1  36 YGLDEELPLLMSIFMGLQHCLAMVGGLITPPLvvfkftvcgfaesfcpdLVGYAVSAALITSGICTILnvaklaipFSeklfgrtLYLGSGVLSVMGTSFTFLPIYeIAIAQMKRDGIDGREAygKMLGTNMVCCLLE--LGLSIL--PAKRLKKIFPPLVTSITVILIGVALTGTGMK 210
                 568********************99766555422222211111111111677777889999*****984443333311222233356788899*********987536777777777776544115688888888764..566554..57899******************99876665 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 3.9e-14
   TIGR03616 244 fnakallliapvalilvaenlghlkavag....mtgrn.ldpylgrafvgdglatmlsgsvggtgvttyaenigvmavtkvystlvfvaaavvaillglspkfgalihtipaavlggasivvfgliavagariwvqnkvdlsqngnlilvavtlvlgag 397
                 f a a+l +     i   e +g ++av       tg +  d  +  ++++dg+ + l++       tt+++n gv+a+tk  s     a++   i++g+  k    i tip +vlgg +i +f  +  +g  i + + vdl    n  ++a +l lg g
  MMETSP1061-20121228|5138_1 330 FYAPAVLPMLIAYFITTVETVGDINAVFEgselETGTDeYDESIQGGLLADGVNSFLASLFTSMPNTTFSQNNGVIALTKCASRRAGYACGAWLIFFGVFGKVAGTITTIPDCVLGGMTIFLFSNVLASG--INLTKLVDLESRRNRFVMAFSLALGVG 486
                 666676655555678899999999999532222466542789999***************************************************************************9999877666..7789*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 2591.39
//
Query:       MMETSP1061-20121228|5140_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       687  (0.167479); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|5144_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       404  (0.0984885); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 683.94
//
Query:       MMETSP1061-20121228|5146_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   18.6   1.0    0.00017   18.4   0.7    1.0  1  TIGR00909 2A0306: amino acid transporter
      0.002   14.4   1.1     0.0022   14.3   0.8    1.0  1  TIGR00906 2A0303: cationic amino acid transport permease


Domain annotation for each model (and alignments):
>> TIGR00909  2A0306: amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.7   8.4e-08   0.00017     128     190 ..      17      79 ..      11      93 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 8.4e-08
   TIGR00909 128 gdggvlnlpallivllltiilllGvkeskkvnsilvvlkvlavllFvalgaiklkstnytpfm 190
                 ++   +n  a +i+++  ++l  Gv+esk v + ++v k++ v + ++ g   ++++n +p +
  MMETSP1061-20121228|5146_1  17 SSEAFFNPLAGIISMASVVVLACGVQESKAVTNFFTVTKMILVGIMIVGGFCLFSPSNMSPLV 79 
                 45567887788999999*************************************999999864 PP

>> TIGR00906  2A0303: cationic amino acid transport permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.8   1.1e-06    0.0022     165     212 ..      22      69 ..       6      80 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-06
   TIGR00906 165 pdflavililllavllalGvkesarvnkiftiinllvllfvivaGfvk 212
                  ++la i+ +   v+la Gv+es  v ++ft+ +++++  +iv Gf  
  MMETSP1061-20121228|5146_1  22 FNPLAGIISMASVVVLACGVQESKAVTNFFTVTKMILVGIMIVGGFCL 69 
                 5677888888888999*****************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 590.81
//
Query:       MMETSP1061-20121228|5142_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   11.9   1.6       0.14   10.4   1.1    1.7  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
       0.15    8.5   2.4       0.22    7.9   1.7    1.3  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.1   6.7e-05      0.14      14      41 ..      19      46 ..      18      52 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.7e-05
   TIGR02811 14 LLkglavgaaagavaaatgrvasasaaa 41
                +++++a++++ag+++ +t+  ++a+++ 
  MMETSP1061-20121228|5142_1 19 MIMAMAMAMLAGSITSGTTIFVAAATKE 46
                689*****************88777654 PP

>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   1.7   0.00011      0.22     293     356 ..     154     216 ..     113     227 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00011
   TIGR02031 293 pesegeeeedeeeeeeeekeeeqlpeelildAveallpeeiLellqkaqagrkkkgksGakgeq 356
                 ++ + +++++++e++++   ++ +++e++++A + l ++e   +++++++  ++  ++Ga++e+
  MMETSP1061-20121228|5142_1 154 NNIDNNNNNNNNEQDDKYYTDDGVINEVMVKARKELYEKERFGTSNTGNGA-NSIRGNGAQQEE 216
                 22223333333444444445559************************9654.566678888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       488  (0.118966); expected 82.0 (0.02)
Passed bias filter:                      214  (0.0521697); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 1393.80
//
Query:       MMETSP1061-20121228|5149_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 653.66
//
Query:       MMETSP1061-20121228|5141_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 2217.42
//
Query:       MMETSP1061-20121228|5143_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   15.3   3.5     0.0086   13.8   2.4    1.9  1  TIGR01071 rplO_bact: ribosomal protein L15


Domain annotation for each model (and alignments):
>> TIGR01071  rplO_bact: ribosomal protein L15
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   2.4   2.1e-06    0.0086      62     142 ..      58     141 ..       3     143 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.1e-06
   TIGR01071  62 krgfsnk.lkkelevvnvekleklfkdg.evvtlekLlekklikkknkl.vKvlgkgklekkltvkaekvsksakakiekaggs 142
                  r f+   +++++ ++n++k+ +++ +g  +  ++   ++ +i+  +    K+lg+g+++ ++ vka+ +s  a++ki++agg 
  MMETSP1061-20121228|5143_1  58 MRQFHVLkNRTHCPTINLDKIFSVAGEGyYEAAKNGGGKAPVIDLVKLGyFKLLGNGQIDVPVIVKAKFFSRLAEQKIKAAGGA 141
                 455555557888888999999988888854555666666777776444459*******************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 917.64
//
Query:       MMETSP1061-20121228|5153_1  [L=897]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 3699.82
//
Query:       MMETSP1061-20121228|5156_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    9.2   7.7       0.25    9.6   3.7    1.9  2  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.15   6.1e+02       7      28 ..      70     103 ..      68     107 .. 0.51
   2 ?    9.6   3.7   6.1e-05      0.25      22      42 ..     209     229 ..     197     230 .] 0.84

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.15
   TIGR03892   7 etfEisDyad.............laevgassgats 28 
                 +t+E+  + d             ++e+++ + a+s
  MMETSP1061-20121228|5156_1  70 DTMELLKLYDcplysdrfgvsyeETETET-NAAAS 103
                 56666555554444445555544444444.44544 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 6.1e-05
   TIGR03892  22 assgatstsssSsCsTcscts 42 
                 ++s ++s +s++s+sT+++t+
  MMETSP1061-20121228|5156_1 209 DGSYTASFISTASTSTTTTTT 229
                 47899999**********997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1445.59
//
Query:       MMETSP1061-20121228|5157_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.23
# Mc/sec: 2932.45
//
Query:       MMETSP1061-20121228|5160_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1073.13
//
Query:       MMETSP1061-20121228|5159_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 1001.92
//
Query:       MMETSP1061-20121228|5161_1  [L=1394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.13s 00:00:00.69 Elapsed: 00:00:00.46
# Mc/sec: 3999.84
//
Query:       MMETSP1061-20121228|5168_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 765.54
//
Query:       MMETSP1061-20121228|5166_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    9.4   4.2       0.15    9.0   2.9    1.1  1  TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
       0.99    5.8   7.3        1.2    5.5   5.1    1.2  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D


Domain annotation for each model (and alignments):
>> TIGR00173  menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.9   7.4e-05      0.15     179     236 ..       3      59 ..       1      73 [. 0.75

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 7.4e-05
   TIGR00173 179 qewekeeaatkvakeekeldeesveelaeeleqkkrgliiaGelageeeaealaalae 236
                 q+ +++++ ++  ++++++++++ +e++++l q + ++++aG+ a++++ +++ +l  
  MMETSP1061-20121228|5166_1   3 QQQQQQQQPQQQPQPQPQQQQQQEQEQEQQLPQLA-RIVVAGSHARDKDGHRILQLLP 59 
                 33344455778888888888888899999999998.9********9778777777654 PP

>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   5.1   0.00061       1.2     276     308 ..       3      33 ..       1      66 [. 0.57

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00061
   TIGR02031 276 ekepeqeeppppPpPpepesegeeeedeeeeee 308
                 +++++q++p+++P P++++   +++e+e+e++ 
  MMETSP1061-20121228|5166_1   3 QQQQQQQQPQQQPQPQPQQ--QQQQEQEQEQQL 33 
                 2233334444444444222..234444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                      230  (0.0560702); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1045.35
//
Query:       MMETSP1061-20121228|5165_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 2614.12
//
Query:       MMETSP1061-20121228|5169_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.1    4.5   6.4        2.6    4.2   4.5    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   4.5   0.00063       2.6     320     374 ..      26      80 ..       4     109 .. 0.38

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.00063
   TIGR02442 320 ekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeae 374
                 ++++++++e++++++ + e+  e+  ++++++++++++++++dd+++++ +e+ +
  MMETSP1061-20121228|5169_1  26 SDDSSSEDESSHHDEYEDEESVEDVTDSNDNDNDNDNDNDDDDDDDDSELREPRQ 80 
                 2222222222222221111111111222222222222222223333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 1152.70
//
Query:       MMETSP1061-20121228|5170_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1687.17
//
Query:       MMETSP1061-20121228|5171_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 670.10
//
Query:       MMETSP1061-20121228|5175_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.71
# Mc/sec: 466.61
//
Query:       MMETSP1061-20121228|5174_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-25   83.9  43.4    0.00019   19.0   0.0   11.8 11  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat
      0.003   15.9   5.5        1.3    7.4   0.1    4.8  5  TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0005         1      16      26 .]       9      19 ..       9      19 .. 0.94
   2 ?    1.9   0.1      0.02        42      15      25 ..      33      43 ..      21      43 .. 0.85
   3 !    8.3   0.1    0.0002      0.41       1      26 []      45      69 ..      45      69 .. 0.83
   4 !   12.5   0.0     1e-05      0.02      13      25 ..      81      93 ..      80      94 .. 0.88
   5 !    8.4   0.0   0.00019      0.39       1      25 [.      95     118 ..      95     119 .. 0.95
   6 !   19.0   0.0   9.1e-08   0.00019       1      24 [.     120     142 ..     120     143 .. 0.94
   7 !   13.3   0.2   5.3e-06     0.011      12      26 .]     165     179 ..     162     179 .. 0.91
   8 !   10.9   0.3   3.2e-05     0.065       1      25 [.     180     203 ..     180     204 .. 0.86
   9 !    7.7   0.1   0.00031      0.63       1      24 [.     205     227 ..     205     227 .. 0.92
  10 !   15.0   1.4   1.6e-06    0.0033       1      25 [.     230     253 ..     230     254 .. 0.95
  11 ?    2.8   0.1     0.011        23       1      21 [.     255     274 ..     255     275 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0005
   TIGR02167 16 fdTsnVTnMss 26
                +d+s VTnM +
  MMETSP1061-20121228|5174_1  9 WDVSGVTNMGY 19
                *********86 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.02
   TIGR02167 15 nfdTsnVTnMs 25
                 +d+s +T Ms
  MMETSP1061-20121228|5174_1 33 CWDVSGTTEMS 43
                5*********7 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0002
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMss 26
                MFs  s++++  +  +++s+V  M++
  MMETSP1061-20121228|5174_1 45 MFSAASAFNQ-SINEWNVSKVRSMKG 69
                7777777777.7888*********86 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 1e-05
   TIGR02167 13 lSnfdTsnVTnMs 25
                l ++d+s+VT M 
  MMETSP1061-20121228|5174_1 81 LASWDVSSVTRMG 93
                789*********6 PP

  == domain 5    score: 8.4 bits;  conditional E-value: 0.00019
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF+  s++++ +l  ++++ V  M 
  MMETSP1061-20121228|5174_1  95 MFRKASKFNQ-NLNAWNVGRVQQME 118
                 9*********.**********9886 PP

  == domain 6    score: 19.0 bits;  conditional E-value: 9.1e-08
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnM 24 
                 MF +   +++ +l ++d+s+VTnM
  MMETSP1061-20121228|5174_1 120 MFKDAYLFNQ-PLASWDVSSVTNM 142
                 9999999999.************* PP

  == domain 7    score: 13.3 bits;  conditional E-value: 5.3e-06
   TIGR02167  12 DlSnfdTsnVTnMss 26 
                 ++S +d+s+V nM+s
  MMETSP1061-20121228|5174_1 165 PISAWDVSSVQNMDS 179
                 69***********85 PP

  == domain 8    score: 10.9 bits;  conditional E-value: 3.2e-05
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF++   +++ +lSn+ +s+VT M+
  MMETSP1061-20121228|5174_1 180 MFRSANYFNQ-PLSNWTVSKVTKMT 203
                 7777777888.9************7 PP

  == domain 9    score: 7.7 bits;  conditional E-value: 0.00031
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnM 24 
                 MF    ++++ +l+ +d+s+V +M
  MMETSP1061-20121228|5174_1 205 MFEAANNFNQ-PLDAWDVSKVKTM 227
                 8999999999.9*********888 PP

  == domain 10    score: 15.0 bits;  conditional E-value: 1.6e-06
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF+gC++++++ lS++++  VT M+
  MMETSP1061-20121228|5174_1 230 MFRGCDNFNQI-LSSWNVTGVTSMT 253
                 **********7.************8 PP

  == domain 11    score: 2.8 bits;  conditional E-value: 0.011
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnV 21 
                 MF++   +++ DlS +++++V
  MMETSP1061-20121228|5174_1 255 MFASAVLFNQ-DLSVWNVGSV 274
                 5666666677.********99 PP

>> TIGR01766  tspaseT_teng_C: transposase, IS605 OrfB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.026        53      38      61 ..      45      67 ..      37      69 .. 0.81
   2 !    7.4   0.1   0.00063       1.3      35      61 ..      92     117 ..      86     123 .. 0.85
   3 ?    2.2   0.0     0.026        54      36      61 ..     178     202 ..     170     209 .. 0.78
   4 ?    3.2   0.0     0.013        27      33      63 ..     200     229 ..     195     231 .. 0.82
   5 ?   -0.4   0.0      0.17   3.6e+02      39      61 ..     231     252 ..     220     257 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.026
   TIGR01766 38 svekkskklrrklhqwsfrklisk 61
                +++   + +++++++w+ +k++s+
  MMETSP1061-20121228|5174_1 45 MFS-AASAFNQSINEWNVSKVRSM 67
                455.6678***********99876 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00063
   TIGR01766  35 ikesvekkskklrrklhqwsfrklisk 61 
                 + ++++ k +k++++l+ w+  +++++
  MMETSP1061-20121228|5174_1  92 MGQMFR-KASKFNQNLNAWNVGRVQQM 117
                 668999.6667***********99986 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.026
   TIGR01766  36 kesvekkskklrrklhqwsfrklisk 61 
                   +++   +++++ l++w+ +k++++
  MMETSP1061-20121228|5174_1 178 DSMFR-SANYFNQPLSNWTVSKVTKM 202
                 34566.6779***********99887 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.013
   TIGR01766  33 knikesvekkskklrrklhqwsfrklisklk 63 
                 +++ +++e   +++++ l+ w  +k++ +l+
  MMETSP1061-20121228|5174_1 200 TKMTRMFE-AANNFNQPLDAWDVSKVKTMLA 229
                 55667788.7778**************9986 PP

  == domain 5    score: -0.4 bits;  conditional E-value: 0.17
   TIGR01766  39 vekkskklrrklhqwsfrklisk 61 
                 ++   +++++ l+ w+   ++s+
  MMETSP1061-20121228|5174_1 231 FR-GCDNFNQILSSWNVTGVTSM 252
                 55.5678********99887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1503.88
//
Query:       MMETSP1061-20121228|5178_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1105.98
//
Query:       MMETSP1061-20121228|5179_1  [L=1154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.47
# Mc/sec: 3240.75
//
Query:       MMETSP1061-20121228|5184_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.36    7.0  23.4       0.51    6.5  16.2    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
       0.51    7.1  25.6       0.79    6.5  17.7    1.2  1  TIGR00414 serS: serine--tRNA ligase
        2.8    4.3  16.1        4.8    3.6  11.2    1.3  1  TIGR00437 feoB: ferrous iron transport protein B
        5.6    3.1  32.8        8.3    2.6  22.7    1.2  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
        5.9    2.9  21.1        7.8    2.5  14.6    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  16.2   0.00062      0.51     306     410 ..     145     261 ..      77     283 .. 0.50

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00062
   TIGR02442 306 lkhRrrrkpfeee.......qekeekkleekkeeakpdeekedeseekekeeskkqe........eeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGr 410
                 l+   +++ ++++       q  +++++++++++ ++++++++++ +++++++ +q+        + + + + ++++++++++++++ +a + + + +++ ++  l++++++++++  G+
  MMETSP1061-20121228|5184_1 145 LQQQLQQQQMQQQlqqqiqiQ--QQQQQQQQQQQMQQQQQQQQQQ-QQQQQQQLQQHqmqlqlkmQLQMQMKLQQQQQQQQQHQQQQIQAASGMKNLNSQNINLALMRAQQNQNQSFVGQ 261
                 444444444444444444331..2222222222111111111111.11111111111122334332222223333333344444444445555555555555555555555555555554 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  17.7   0.00097      0.79      10     120 ..     141     249 ..     131     290 .. 0.59

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00097
   TIGR00414  10 nlelvkeklkarglsveidleklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpvgkde 120
                 ++ +++++l+++++ ++++++  ++++++++++++++++ q+++++++++ +++ ++++ +  +lk +l +++ +l++ +++ ++ +++  + ++ + nl ++++ ++   
  MMETSP1061-20121228|5184_1 141 DFVKLQQQLQQQQMQQQLQQQIQIQQQQQQQQQQQQMQQQQQQQQQQQQQQQQQLQQHQMQ-LQLKMQL-QMQMKLQQQQQQQQQHQQQQIQAASGMKNLNSQNINLALMR 249
                 5566677777777755555544455555555555555555444444444444433333332.2244444.45667777777777777666667777888877777666433 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6  11.2    0.0059       4.8     142     229 ..     154     240 ..     128     293 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0059
   TIGR00437 142 gieelkkaideekaiklvekkkraieilkeaeslaevk.eklkelkqkl..kkglevleglleeraleiekiekelaevvkkesesklsat 229
                   ++l+++i+++++++++++++++++++++ +++++ + ++l++ + +l  k++l++  +l +++    ++ +++ ++ +++ s +k    
  MMETSP1061-20121228|5184_1 154 MQQQLQQQIQIQQQQQQQQQQQQMQQQQQQQQQQQQQQqQQLQQHQMQLqlKMQLQMQMKLQQQQ----QQQQQHQQQQIQAASGMKNLNS 240
                 34566666666555555555555554444443333333023333332222233333333333333....3333333333333333222222 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  22.7      0.01       8.3      32     165 ..     123     256 ..     104     268 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.01
   TIGR03319  32 eeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekek..eleekeeeleellkeqkeeLekisgltqeeAkellleeveeelkeea 165
                 ++++ +++    +  +    + l+++ ++++++++l+++++ ++++ q+++++ +q++++ ++++   ++++++l++++ +l+ k++     + +++ ++++++q+++++  sg+ + + +++ l  ++++ +++ 
  MMETSP1061-20121228|5184_1 123 KNSNGMVNANGLNGLNMADFVKLQQQLQQQQMQQQLQQQIQIQQQQQQQQQQQQMQQQQQQQQQQ--QQQQQQQLQQHQMQLQLKMQlqMQMKLQQQQQQQQQHQQQQIQAASGMKNLNSQNINLALMRAQQNQNQ 256
                 55555555555555555555666777777777888888877777666666665555555544444..355666666666666544331034455666777778888899999999999999988888887776655 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5  14.6    0.0095       7.8     251     398 ..     107     257 ..      23     294 .. 0.43

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0095
   TIGR00934 251 srdidpedlyrsimmlqekheata.............kirdkiseanslaaesdees.sesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakks 398
                   + +++++ +++ m+++ +   +             k+++++++++       +++  +  +iq++ +++  ++++++++qq+ +++++++       ++ ++ +++ +++ +   +l++++++q+ ++++  +a    kn+++++ nl l+++ + +++s
  MMETSP1061-20121228|5184_1 107 RGNFNVQQSAQTNNMMKNSNGMVNanglnglnmadfvKLQQQLQQQQM------QQQlQQQIQIQQQQQQQQQQQQMQQQQQQQQQQQQQQQQQL----QQHQM-QLQLKMQLQMQMKLQQQQQQQQQHQQQQIQAASGMKNLNSQNINLALMRAQQNQNQS 257
                 223333333333333333222222233333322222222222221111......11112223344444333333333333222222211111111....11111.111111111112222222222333333333333334444444444444444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1432  (0.349098); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        95  (0.0231594); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.15s 00:00:00.78 Elapsed: 00:00:00.45
# Mc/sec: 1610.27
//
Query:       MMETSP1061-20121228|5181_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 1262.15
//
Query:       MMETSP1061-20121228|5185_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 2048.70
//
Query:       MMETSP1061-20121228|5186_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1468.38
//
Query:       MMETSP1061-20121228|5188_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 964.09
//
Query:       MMETSP1061-20121228|5193_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-26   91.3   0.0    1.7e-26   91.0   0.0    1.0  1  TIGR00887 2A0109: phosphate:H+ symporter
    3.4e-09   33.6   0.0      4e-09   33.4   0.0    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    1.8e-05   21.5   0.8    0.00011   18.9   0.6    1.8  1  TIGR00898 2A0119: cation transport protein
    2.2e-05   21.4   1.4      0.011   12.6   1.4    2.0  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
     0.0052   13.6   0.3     0.0056   13.5   0.2    1.1  1  TIGR00893 2A0114: D-galactonate transporter
     0.0064   12.2   0.2      0.012   11.3   0.1    1.4  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
  ------ inclusion threshold ------
      0.018   11.9   0.3      0.021   11.7   0.2    1.1  1  TIGR00881 2A0104: phosphoglycerate transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   2.9e-29   1.7e-26     362     500 ..      20     157 ..      16     159 .. 0.90

  Alignments for each domain:
  == domain 1    score: 91.0 bits;  conditional E-value: 2.9e-29
   TIGR00887 362 lGRkaiqlmGFviltvlfvvlaiaynelsek..gllalyvlaqfFanFGPnattFivPaevFPaRlRstahGisaaaGkvGaiiaqlalslladkgaakkgkptgiwvenvleifalvmllGilftl.LiPetkgksleels 500
                 lGR  +q  GF+  +vlfv+ ++     s++  + +aly l  f    GPn ttF++Pae+ P+  R+ +hG+ aaaGkvGa++a++ + ++a +++ ++        e+++ +  ++ ll   +t   +Pe+++ +l el+
  MMETSP1061-20121228|5193_1  20 LGRTRLQTLGFLANGVLFVACGALVASGSSNasATIALYWLSSFVGQLGPNCTTFLIPAEIVPTDQRTYGHGVCAAAGKVGALVAAVVFHKIAPENNDNDS----DHRERLFYLSGACSLLAAAVTHgFVPESARLDLLELD 157
                 8*********************9998888777799********************************************************9997776653....456888999999999887766549********99987 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   6.9e-12     4e-09     372     507 ..      18     153 ..      15     156 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 6.9e-12
   TIGR00879 372 drfGRrtllliGaagmaiclfvlgilgvssvtgsskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlen.....sigqgvvFiffgalnvlalilvyfflpetkgltl 507
                 +++GR +l+++G+++  + ++ +g l++s+  +     +   i++  l +++ +lg ++  +++ +Ei p+  R+ g  +++aa  +++++ a++f  +  +     s +    F + ga ++la++++  f+pe + l l
  MMETSP1061-20121228|5193_1  18 RLLGRTRLQTLGFLANGVLFVACGALVASGSSN-----ASATIALYWLSSFVGQLGPNCTTFLIPAEIVPTDQRTYGHGVCAAAGKVGALVAAVVFHKIAPEnndndSDHRERLFYLSGACSLLAAAVTHGFVPESARLDL 153
                 578*********************999999996.....6666666777777779******************************************99999889**95555668*********************887765 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.6   1.9e-07   0.00011     381     469 ..      19     111 ..      15     155 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.9e-07
   TIGR00898 381 rLgRrktmaaslllagvallllllvpeelk...llrtalavvgkagissaFqm.aylytaELYPTvvRnlgvgvcstmarvGsiisPflvyvl 469
                  LgR   + + +l+ gv +++  ++  + +     ++al  ++ ++     ++  +l+ aE+ PT  R  g gvc+++ +vG++++ +++  +
  MMETSP1061-20121228|5193_1  19 LLGRTRLQTLGFLANGVLFVACGALVASGSsnaSATIALYWLSSFVGQLGPNCtTFLIPAEIVPTDQRTYGHGVCAAAGKVGALVAAVVFHKI 111
                 5899999999999999888887665544444557888999999998888888736999****************************9998754 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   1.4   1.8e-05     0.011     318     394 ..      34     108 ..      11     112 .. 0.66
   2 !    6.5   0.0    0.0012      0.73     173     197 ..     126     150 ..     120     157 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.8e-05
   TIGR00895 318 alllllaavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpila 394
                  +l+++ + ++   +s++s +  l+ l  ++G    g+      + ae+ pt+ R  g g+  + G++ga++++++ 
  MMETSP1061-20121228|5193_1  34 GVLFVACGALVASGSSNASATIALYWLSSFVG--QLGPNCTTFLIPAEIVPTDQRTYGHGVCAAAGKVGALVAAVVF 108
                 23333333333333333333333444455555..457888888899***************************9985 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0012
   TIGR00895 173 lflvggiiplllllllikvLpEsik 197
                 lf++ g+ +ll +++++ ++pEs++
  MMETSP1061-20121228|5193_1 126 LFYLSGACSLLAAAVTHGFVPESAR 150
                 8**********************97 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.2   9.6e-06    0.0056     283     371 ..      17     112 ..       2     144 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9.6e-06
   TIGR00893 283 kslvlarktaiiaglvlsllliatn.lva....skiaalalvalaffgkgl..aailwavisdvlskeiagltgGlinllGnlagivgPivigaia 371
                   l+ ++ +  +++l+  +l++a++ lva    ++ a +al+ l+ f  +l     ++ ++++ ++      + G+  ++G+++++v++ v+  ia
  MMETSP1061-20121228|5193_1  17 TRLLGRTRLQTLGFLANGVLFVACGaLVAsgssNASATIALYWLSSFVGQLgpNCTTFLIPAEIVPTDQRTYGHGVCAAAGKVGALVAAVVFHKIA 112
                 445555555555555555555555544444444888999999999888878556677889999**************************9997765 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   2.1e-05     0.012     621     706 ..      24     110 ..       6     115 .. 0.73
   2 ?   -2.7   0.0      0.35     2e+02     331     360 ..     122     151 ..     120     158 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.1e-05
   TIGR01299 621 kigrlrmlagssvlsgvscfflsfgtsesamiallclynglsiaawnald.vltvelypsdkratafgflnalcklaavlgilifts 706
                 ++  l +la  +++ +  ++  s  +  sa ial  l + +     n+   ++  e+ p+d+r+ + g   a  k+ a++  ++f  
  MMETSP1061-20121228|5193_1  24 RLQTLGFLANGVLFVACGALVASGSSNASATIALYWLSSFVGQLGPNCTTfLIPAEIVPTDQRTYGHGVCAAAGKVGALVAAVVFHK 110
                 4444555555544444444444444556899**9999999988777776515679*************************9999975 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.35
   TIGR01299 331 hswrvfvlvcalpsvsavvalttqpesprf 360
                 h  r+f l  a   ++a v+  + pes r+
  MMETSP1061-20121228|5193_1 122 HRERLFYLSGACSLLAAAVTHGFVPESARL 151
                 667899999999999999999999999997 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   3.5e-05     0.021     275     370 ..      15     112 ..       3     142 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.5e-05
   TIGR00881 275 lsDklfkgrraplavifmaliivsllvywlivaanklvvlillfvlGflv..yGpilligvaaselapkkaiGtaaglvglfaylggilaglplgyla 370
                  s +l+ ++r  +  + + ++++ + +  +   +++ + +i+l  l  +v   Gp   + ++ +e++p       +g+   ++ +g+++a +++ ++a
  MMETSP1061-20121228|5193_1  15 SSTRLLGRTRLQTLGFLANGVLFVACGALVASGSSNASATIALYWLSSFVgqLGPNCTTFLIPAEIVPTDQRTYGHGVCAAAGKVGALVAAVVFHKIA 112
                 56778889998887777777777777777777777788888888887776457999999999999999999999999999999999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 983.92
//
Query:       MMETSP1061-20121228|5196_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 694.68
//
Query:       MMETSP1061-20121228|5197_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 478.46
//
Query:       MMETSP1061-20121228|5189_1  [L=904]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (904 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.11s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 3224.81
//
Query:       MMETSP1061-20121228|5198_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 975.92
//
Query:       MMETSP1061-20121228|5192_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       637  (0.15529); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1179.10
//
Query:       MMETSP1061-20121228|5191_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1105.41
//
Query:       MMETSP1061-20121228|5200_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0083   13.9   0.0       0.11   10.3   0.0    2.5  2  TIGR01915 npdG: NADPH-dependent F420 reductase
  ------ inclusion threshold ------
        0.4    8.9   0.0        0.4    8.9   0.0    3.5  4  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR01915  npdG: NADPH-dependent F420 reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   5.2e-05      0.11       7      94 ..      72     169 ..      67     203 .. 0.70
   2 ?    0.2   0.0     0.064   1.3e+02      88     137 ..     313     367 ..     302     372 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.2e-05
   TIGR01915   7 GGtGdqGkGlalRlAkageeiiiGsRdke.kAe.....eaAkkaleeleekG.d...eikveGleneeaAkradvvilavpldavlktleslkeelea 94 
                  G G + +G+a  lAk+g++ ++ s +   +A+     +  +k+   + ++G      +  +  + ++ A ++dv i+a+p++ + +++++l+ +l+a
  MMETSP1061-20121228|5200_1  72 AGAGAVAFGMASILAKNGHQTLLWSPSGKgTADlipkdQIESKVPPSITSTGaMhheFVPEIASSAQQLATESDVLIVALPANGHKQIFDALAPHLSA 169
                 57889999999999999988888776543133311111334555556666664332112223445677899*********************999986 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.064
   TIGR01915  88 lkeeleadklvisavvplasa..geka...vrylkpeeGsaaeavakllkegskv 137
                   e+l+ ++l i  + +l+ +   e++    ++  p+ Gs +e+ +++ k g +v
  MMETSP1061-20121228|5200_1 313 FLEQLDRERLEIASALGLDVKtvYEHFnlsFHVPIPQSGSLSEMCQDIYKKGNDV 367
                 5566777777777777766543333321114566799***********9999988 PP

>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.9      0.19     4e+02      31      41 ..     168     178 ..     162     179 .. 0.62
   2 ?   -5.2   1.5         2   4.1e+03      36      41 ..     215     220 ..     212     221 .. 0.80
   3 ?   -0.5   0.0      0.18   3.6e+02       1      12 [.     314     325 ..     314     335 .. 0.86
   4 ?    8.9   0.0    0.0002       0.4       1      33 [.     425     474 ..     425     477 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.19
   TIGR03892  31 ssSsCsTcsct 41 
                 s+Ss s++s+t
  MMETSP1061-20121228|5200_1 168 SASSPSSSSAT 178
                 55555555555 PP

  == domain 2    score: -5.2 bits;  conditional E-value: 2
   TIGR03892  36 sTcsct 41 
                 +T++ct
  MMETSP1061-20121228|5200_1 215 GTTVCT 220
                 699998 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.18
   TIGR03892   1 lteLDietfEis 12 
                 l+ LD e +Ei 
  MMETSP1061-20121228|5200_1 314 LEQLDRERLEIA 325
                 789*******96 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.0002
   TIGR03892   1 lteLDietfEisDyadlaevga.................ssgatstsssS 33 
                 l+++D++ +E+s++ ++a++g                  ++++ s++s+S
  MMETSP1061-20121228|5200_1 425 LEAIDLDGIELSELREAARTGQlskpiffggavtppqrhGDSSPSKVSAS 474
                 799*************8888886666666666666666677777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1988.09
//
Query:       MMETSP1061-20121228|5201_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       316  (0.0770356); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 1815.74
//
Query:       MMETSP1061-20121228|5204_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1061-20121228|5206_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.48
# Mc/sec: 1682.86
//
Query:       MMETSP1061-20121228|5205_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 2185.74
//
Query:       MMETSP1061-20121228|5210_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 422.37
//
Query:       MMETSP1061-20121228|5208_1  [L=1317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.13s 00:00:00.70 Elapsed: 00:00:00.55
# Mc/sec: 3160.54
//
Query:       MMETSP1061-20121228|5212_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|5207_1  [L=845]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-14   50.6   0.0    4.1e-14   50.0   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    2.1e-11   41.2   0.0    3.3e-11   40.6   0.0    1.2  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    1.8e-05   21.8   0.0    3.6e-05   20.8   0.0    1.4  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B
  ------ inclusion threshold ------
      0.018   11.8   0.0      0.028   11.1   0.0    1.2  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.0   0.0     4e-17   4.1e-14      13     177 ..     635     815 ..     626     834 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.0 bits;  conditional E-value: 4e-17
   TIGR02160  13 tadaveisfevPeelaedyrfepGqhltlkaeldGeelrrsys.icdavadgeirvavkki........eGGlfstwaneeiraGdtlevmaPqGrftskldaer........akhyvavaaGsGitPilaivktvlaa.epkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsr 177
                 ++d+  + f++P +  +      G+h+ l a+++Ge + r y+ i + ++ g ++  +k+         +GG +s+++ + ++ Gd l+   P G+++++ d +         a  + ++a G+GitP++ i+  +l + ++ +++ l++a r++ +++++ +l++   ++p++f+++ +ls 
  MMETSP1061-20121228|5207_1 635 SRDSFMLDFALPTP-DHVLGLPTGKHMFLSAKINGETVLRRYTpISSNYDLGCVKFVIKAYppapprfpNGGKMSQYL-DALKIGDFLDFRGPVGELEYHADGKFlvdnepqtASCFNMIAGGTGITPVMQIASEILRHpQDPTKISLIFACREEGDLLMRSTLDEWSVQFPHKFKVHYILSD 815
                 56667777777766.34566789*************987777549999999*******986333333446*******8.89*********9998877766665555555665599999*******************86367799************************************96 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   3.2e-14   3.3e-11     193     361 ..     659     837 ..     616     843 .. 0.84

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 3.2e-14
   TIGR01941 193 dlfdlvskveeetvrayslanypeekgiiklnvriatppfanaeippGkmssyifslkpGdkvtvsGpfGef.......fvkdtdae....lvfigGGaGmaplrshildllkrlkskrkisfwyGarskrevfyeedfdeleaend.nfkyhvalsdplpednwtGytgfihnvlyenyl 361
                 ++f     + e+++r y+  +   + g +k+ ++ a pp+     + Gkms y+ +lk Gd +   Gp Ge        f+ d++ +    + +i+GG+G++p+     + l++ +   kis+ +  r + + + +   de   +++  fk h +lsd  pe  w+   gf+ + l++++l
  MMETSP1061-20121228|5207_1 659 HMFLSAKINGETVLRRYTPISSNYDLGCVKFVIK-AYPPAPPRFPNGGKMSQYLDALKIGDFLDFRGPVGELeyhadgkFLVDNEPQtascFNMIAGGTGITPVMQIASEILRHPQDPTKISLIFACREEGDLLMRSTLDEWSVQFPhKFKVHYILSDAVPEG-WKYSKGFVDKSLFQEHL 837
                 566666778899******999999*******998.5566655455678**********************9532222334455543311114579*********9999999***********************************846************95.99999*******99987 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   3.5e-08   3.6e-05      67     179 ..     705     831 ..     701     839 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 3.5e-08
   TIGR02911  67 gkvtdevfelkegdklflrgpygn.......gfdvdnykdke..lvvvaggtgvapvkgvveyfaknskevkeldlivgfktredilfkedlaewkek....inlvltl.deaeeddkykvglvtky 179
                 gk+++ +  lk+gd l +rgp g+        f vdn  +    + ++aggtg++pv  + + + + +++  +++li   +++ d+l++  l+ew  +    +++   l d   e+ ky  g v k 
  MMETSP1061-20121228|5207_1 705 GKMSQYLDALKIGDFLDFRGPVGEleyhadgKFLVDNEPQTAscFNMIAGGTGITPVMQIASEILRHPQDPTKISLIFACREEGDLLMRSTLDEWSVQfphkFKVHYILsDAVPEGWKYSKGFVDKS 831
                 788888888999999999999885433333236677754433126799***********************************************86511113333222255667777777777765 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.8e-05     0.028     234     315 ..     704     792 ..     681     826 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.8e-05
   TIGR03224 234 rgvasnylcdlkkgdkvqvigpfgs.......tflmpnhpe..ssilmictgtgsapmramterrrrrrakgeggklllffgartkeelpy 315
                  g  s+yl  lk+gd ++  gp g         fl+ n p+  s   mi  gtg +p+  ++    r+ ++    k+ l+f  r + +l  
  MMETSP1061-20121228|5207_1 704 GGKMSQYLDALKIGDFLDFRGPVGEleyhadgKFLVDNEPQtaSCFNMIAGGTGITPVMQIASEILRHPQD--PTKISLIFACREEGDLLM 792
                 57889*****************99533333337*****997325678**********77666555555544..578888899888877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 2935.02
//
Query:       MMETSP1061-20121228|5219_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 540.53
//
Query:       MMETSP1061-20121228|5211_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-274  908.0   0.1   2.5e-274  907.7   0.1    1.0  1  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
   9.5e-214  707.8   0.2   1.1e-213  707.6   0.1    1.0  1  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
    1.6e-50  169.9   0.3    3.7e-50  168.8   0.2    1.5  1  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
    4.6e-48  161.7   0.2    7.1e-48  161.1   0.1    1.2  1  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    1.5e-47  160.2   0.1      3e-47  159.2   0.1    1.4  1  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    5.8e-46  154.9   0.1    1.1e-45  154.0   0.1    1.3  1  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
    1.4e-45  153.8   0.0      2e-45  153.3   0.0    1.1  1  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
      3e-38  129.6   0.1    3.9e-38  129.2   0.1    1.1  1  TIGR00962 atpA: ATP synthase F1, alpha subunit
    7.4e-37  125.0   0.1    9.6e-37  124.6   0.1    1.1  1  TIGR01039 atpD: ATP synthase F1, beta subunit
    2.2e-32  110.2   0.0    2.9e-32  109.8   0.0    1.0  1  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
    2.6e-31  106.5   0.3    5.9e-22   75.6   0.0    2.1  2  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    6.2e-29   98.9   0.1      7e-29   98.7   0.0    1.1  1  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
    1.3e-24   84.6   0.1    6.8e-20   69.0   0.0    2.1  2  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit


Domain annotation for each model (and alignments):
>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  907.7   0.1    8e-277  2.5e-274       1     465 [.      39     501 ..      39     503 .. 0.99

  Alignments for each domain:
  == domain 1    score: 907.7 bits;  conditional E-value: 8e-277
   TIGR01040   1 eyktvsgvngplvildevkfpkfaeivnlkladgtvrkgqvlevsgekavvqvfegtsgidakkttveftgdilrlpvsedmlgrvfngsgkpidkgpkvlaedyldingqpinpkariypeemiqtgisaidvmnsiargqkiplfsaaglphneiaaqicrqaglvkksekdvkdekeenfaivfaamgvnletarffkqdfeengslervtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrvegrngsitqipiltmpnddithpipdltgyitegqiyvdrqlhnrqiyppinvlpslsrlmksaigegmtrkdhsdvsnqlyakyaigkdvaamkavvgeealssedllyleflekfekkfiaqgayesrtifesldlawellrifpkellkripkkileefyereka 465
                 ey+t++gvngplvild+vk pk++eivnl+l dg++r+gqvlevsg++avvqvfegts id++kt++eftg+il+++vse+mlgr fngsgk id++pkvlae+ylding pinp++r yp+ miqtgisaidvmns+argqkip+fsaaglphne+aaqi+rqa+lvk  +kd +d++eenf+ivf+amgvn+etarff++dfee+g+++r++lflnlandptieriitprlalttaeylaye++ hvl+iltdmssyadalrevsaareevpgrrg+pgymytdl+tiyeragr+ grngsitq+piltmpnddithpipdltgyitegqiy+drql  + i+ppinvlpslsrlmksaigegmtr dh+ vsnqlya+ya+gkdv+amkavvgeeals ed+lyl fle+fe kfi+qg+ye+rtifesldlaw++lr fpkellk+ipkk+l+++y+r+++
  MMETSP1061-20121228|5211_1  39 EYRTIAGVNGPLVILDNVKLPKYNEIVNLTLRDGEQRSGQVLEVSGSRAVVQVFEGTSDIDNRKTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAYLDINGMPINPSSRDYPKAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVK--QKDTMDSHEENFCIVFGAMGVNMETARFFRSDFEESGAMQRTSLFLNLANDPTIERIITPRLALTTAEYLAYERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMKSAIGEGMTRDDHGAVSNQLYASYAMGKDVMAMKAVVGEEALSMEDHLYLSFLERFEGKFISQGPYEARTIFESLDLAWSILRAFPKELLKKIPKKTLDKYYARRRE 501
                 6************************************************************************************************************************************************************************..5777*********************************************************************************************************************************************************************************************************************************************************************************************99875 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  707.6   0.1  3.5e-216  1.1e-213       1     456 [.      39     501 ..      39     503 .. 0.98

  Alignments for each domain:
  == domain 1    score: 707.6 bits;  conditional E-value: 3.5e-216
   TIGR01041   1 eyktiteikGplvlvekveevaydeiveielpdGekrrGqvldsseglvvvqvfegttgldkeatkvrflGetlklkvsedllGrilngsGepidgGpeivpderrdinGaalnpaareypeefiqtGisaidGlntlvrGqklpifsgsGlphnelalqiarqakvrgee.......sefavvfaalGitaeeanffkkdfektGaleravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvkGkkGsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlmkdGiGeGktredhkdvsdqlyaayaegrdlrdlvaivGeealserdrkylkfadefekkfvkqgrkedrsieetldlgwellsvlpeselkrvdeeliekyhpkyrk 456
                 ey+ti+ ++Gplv+ ++v+   y+eiv+++l dGe+r Gqvl++s + +vvqvfegt+++d+++tk  f+Ge lk+ vse++lGr +ngsG+ id+ p+++++  +dinG ++np +r+yp+ +iqtGisaid +n++ rGqk+pifs++Glphne+a+qiarqa++ +++       ++f +vf+a+G+++e a+ff++dfe++Ga++r+ +flnla+dp++eri+tprlalt+aeyla+e+dlhvl iltd++ y++alre+saareevpGrrGypGy+ytdl+t+yeraGr+ G++Gsitq+piltmp+ddithpipdltGyiteGqi+l+r+l +kGi+ppinvlpslsrlmk+ iGeG tr+dh +vs+qlya+ya g+d+  + a+vGeeals  d+ yl+f ++fe kf++qg +e r+i e+ldl+w +l  +p++ lk++ +++++ky+ + r+
  MMETSP1061-20121228|5211_1  39 EYRTIAGVNGPLVILDNVKLPKYNEIVNLTLRDGEQRSGQVLEVSGSRAVVQVFEGTSDIDNRKTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAYLDINGMPINPSSRDYPKAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLVKQKdtmdsheENFCIVFGAMGVNMETARFFRSDFEESGAMQRTSLFLNLANDPTIERIITPRLALTTAEYLAYERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMKSAIGEGMTRDDHGAVSNQLYASYAMGKDVMAMKAVVGEEALSMEDHLYLSFLERFEGKFISQGPYEARTIFESLDLAWSILRAFPKELLKKIPKKTLDKYYARRRE 501
                 8********************************************************************************************************************************************************************97655446777779***************************************************************************************************************************************************************************************************************************************************************************************99876 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.8   0.2   1.2e-52   3.7e-50      19     373 ..      60     431 ..      42     471 .. 0.87

  Alignments for each domain:
  == domain 1    score: 168.8 bits;  conditional E-value: 1.2e-52
   TIGR03496  19 svgelveieeeegesveaevvgfeeeklllmpleeveglal.gakvvlleeekklpvgeellGrvidalgepldgkgaleaeeevsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvGKsvLlgmlaratea....d.........vvvvaLiGERgREvkefieknLgeeg.lkrsvvvaatadespllrlraaalataiaeyfr.dqgkdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGngkegkGsitafytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvmkkvvseehl..kaarklkqllsryeenrdlisigaYk 373
                 + +e+v+++ ++ge+ +++v++++++++++  +e ++++    +k   + e  k+ v+ee+lGr ++++g+++d+++++ ae+ + ++  pinp +r+  + ++++G+ ai+ + +v++Gq++ +f+++G+    + + +ar+++     d         ++v + +G    E   f  ++++e+g ++r+ +    a+++++ r+ +  la ++aey   +++ +vL ++  ++ +A A Re++ a  E p  +gYp  +++ l+++ EraG+   ++Gsit +  + + +dd + pi d +  i +G i L+R+l  +g++P+i+++ S+SR+mk+++ e  +  +  +   ql+++y   +d++++ a +
  MMETSP1061-20121228|5211_1  60 KYNEIVNLTLRDGEQRSGQVLEVSGSRAVVQVFEGTSDIDNrKTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAYLDINGMPINPSSRDYPKAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASLvkqkDtmdsheenfCIVFGAMGV-NMETARFFRSDFEESGaMQRTSLFLNLANDPTIERIITPRLALTTAEYLAyERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMKSAIGEGMTrdDHGAVSNQLYASYAMGKDVMAMKAVV 431
                 4577889999************************999997615678889999**************************************************************************************9999864222222111222222456677775.46888999999999865899****************************9737799**************************************************999*******99999************************************************998765411455667899******99999988755 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.1   0.1   2.3e-50   7.1e-48      23     369 ..      62     424 ..      43     440 .. 0.86

  Alignments for each domain:
  == domain 1    score: 161.1 bits;  conditional E-value: 2.3e-50
   TIGR03498  23 Gdlveieaeegkkvlaevvgleedevllmpfeslegvelga.avvveeealevrpeeswlGRvidalgepiDgkgalaegeaavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstllsmlaraa.......aaDv...vvialvGeRG..Revrefleddlgeeg.lkrsvvvvatsDesplmRrkaayvalaiaeyfR.dqgkdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpGaegkGsitglftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRlakkvlspeek..klvkrlrallaryeetedl 369
                  ++v+++ ++g++  + v+++++++++++ fe +++++  + +   + e l++ ++e++lGR  +  g+ iD+++++ + ++   ++  p+++ sR   ++ ++tG+ +id++ +++rGq++ if+ +G+    + + +ar+a       ++D    +   + G  G   e   f   d+ e+g ++r+ +    ++++++ R  ++  al+ aey+  +++ +vl +l  +  +a a Re++ a +e p  rGY+  ++++l  + eRaG  +  +Gsit l  + +  Dd + P+ D +  i +G i ldR++  +g +P+invl s+sRl+k ++ + +   +      +l a+y+  +d+
  MMETSP1061-20121228|5211_1  62 NEIVNLTLRDGEQRSGQVLEVSGSRAVVQVFEGTSDIDNRKtKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAY-LDINGMPINPSSRDYPKAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQAslvkqkdTMDSheeNFCIVFGAMGvnMETARFFRSDFEESGaMQRTSLFLNLANDPTIERIITPRLALTTAEYLAyERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMKSAIGEGMTrdDHGAVSNQLYASYAMGKDV 424
                 57899999****************************98765155588999***********************888877655.88899**********************************************9999998752222111344322244555677773357788******99875899****************************9648999***************************************************************************************************************998765432003333445555666655555 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.2   0.1   9.4e-50     3e-47      41     393 ..      58     427 ..      30     471 .. 0.85

  Alignments for each domain:
  == domain 1    score: 159.2 bits;  conditional E-value: 9.4e-50
   TIGR01026  41 qasvGevclierkgsekkevvaevvgfegekvllmpyeevegvea.gskvlaknealsvkvgegllGrvldalGkplDekgkaldnvekelitapinPlkrakieevlstGvrsidalltvgkGqrlGifaGsGvGkstLlGmiarat....eadv......nvialiGerG..revkefiekdLgeeg.lkrsvvvvatsDespllrlkgayvataiaeyfr.dqGkdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraG..asekGsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllkaivseekkk..avrkfrellskykenedLiri 393
                   +  e+++++ ++ e+    ++v+ ++g++ ++  +e ++ + +  +k  +++e l++ v+e++lGr  +++Gk++D+ +k+l++ + ++   pinP +r   + +++tG+ +id + +v++Gq++ if+ +G     +   iar++    + d       n   + G  G   e   f  +d  e g ++r+ +    ++++++ r+ +   a + aey + ++  +vl ++  +  +a a re++ a  e P ++Gy+  +++ l+ + eraG  +  +Gsit +    +  DD++ Pi D +  i +G i L+r+l  +g++P+i+vl s+srl+k+ ++e +++        +l+++y+  +d++ +
  MMETSP1061-20121228|5211_1  58 LPKYNEIVNLTLRDGEQ--RSGQVLEVSGSRAVVQVFEGTSDIDNrKTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAYLDINGMPINPSSRDYPKAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQAslvkQKDTmdsheeNFCIVFGAMGvnMETARFFRSDFEESGaMQRTSLFLNLANDPTIERIITPRLALTTAEYLAyERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGriVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMKSAIGEGMTRddHGAVSNQLYASYAMGKDVMAM 427
                 45556777777776666..589*********************86257899**********************************************************************************************9742222222212222245666788882246778******9987589999**************************975899*************************************************877899******99999**************************************************99876511455668899999888777654 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.0   0.1   3.4e-48   1.1e-45      27     354 ..      62     403 ..      41     430 .. 0.83

  Alignments for each domain:
  == domain 1    score: 154.0 bits;  conditional E-value: 3.4e-48
   TIGR02546  27 gelclikekekeseleaevvgfeedealLsplgelsglsl.gseviplgrplsikvgeelLGrvldglGrpldgkkelkakeikkrpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstLlsmiargak....adv.........ivlaLiGeRGRevrefiekelgeekrkrsvlvvstsdrsslerlkaayvataiaeyfR.dqgkkvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGa..sekGsitalYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlkkvvskehk 354
                  e+++++  ++ +++  +v+ ++ ++a+++ ++ +s++ + +++   +g+ l++ v+ee+LGr  +g G+++d+  ++ a++    ++ ++p +p sR   ++++++G+ aiD +  v++Gq+i if++aG     + ++iar+a+     d+         iv++ +G      r f  +  ++ +++r+ l ++ ++ +++er+ + ++a + aey   ++  +vl +l  ++ +a alre++ a  e p rrgyp  +++ l+ + eRaG   + +Gsit l  + + +dd + pi d +  i +G i+L r+l  ++ +P+i+vl slsR++k+ + +  +
  MMETSP1061-20121228|5211_1  62 NEIVNLT-LRDGEQRSGQVLEVSGSRAVVQVFEGTSDIDNrKTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAY--LDINGMPINPSSRDYPKAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASlvkqKDTmdsheenfcIVFGAMGVNMETARFFRSDFEESGAMQRTSLFLNLANDPTIERIITPRLALTTAEYLAyERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRivGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMKSAIGEGMT 403
                 5667776.58889999**********************761577889****************************88888854..5*******************************************************99864222222212222211145555555544445455555556689******************************96366789***********************************************74489*******99999**********************************************986655443 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.3   0.0   6.3e-48     2e-45      19     371 ..      60     431 ..      43     470 .. 0.87

  Alignments for each domain:
  == domain 1    score: 153.3 bits;  conditional E-value: 6.3e-48
   TIGR03497  19 kiGelcsikkkeekkvlaevvgfkeekvlLmPleevegiap.gslveatgkklavkvgkellGkvldglGepldekelvkkkeklpleaeppnplkrkrikdvlevgvkaidglltvGkGqrvGifagsGvGkstllgmiarnak..........adinviaLvGerGr..evrefiekdLgeeG.lkksvvvvatsdqpallrlkaalvataiaeyfr.dqGkkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGk..sekGsitglytvLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvmeeivseehk..elaeklrellavykeaedlikigayk 371
                 k  e+++++ +++++   +v+ +  +++++  +e +++i   +++ e tg+ l++ v++e+lG+ ++g G+++d++ +v  ++ l ++  p+np +r   k ++++g+ aid + +v +Gq++ if+++G     + + iar+a+           + n   + G  G   e   f + d+ e G ++++ +    +++p++ r+ +  +a + aey+  ++  +vl ++  +  +a+a rev+ a +e P ++Gy   +++ l  + eraG+    +Gsit l  + +  Dd+ +Pi+D    i +G i+L+r+L +k+ +P i+vl s+sr+m++ + e  +  ++ +   +l a y   +d++ + a++
  MMETSP1061-20121228|5211_1  60 KYNEIVNLTLRDGEQRSGQVLEVSGSRAVVQVFEGTSDIDNrKTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAYLDINGMPINPSSRDYPKAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARQASlvkqkdtmdsHEENFCIVFGAMGVnmETARFFRSDFEESGaMQRTSLFLNLANDPTIERIITPRLALTTAEYLAyERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRivGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMKSAIGEGMTrdDHGAVSNQLYASYAMGKDVMAMKAVV 431
                 556888888899999999999999999999999999999762578999*********************************9************************************************************985333322222235699999***996226678********996789999999**********************9537899************************************************98789**********************************************************9887765431033344455667888888888777765 PP

>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.1   1.2e-40   3.9e-38      59     374 ..      76     400 ..      45     424 .. 0.85

  Alignments for each domain:
  == domain 1    score: 129.2 bits;  conditional E-value: 1.2e-40
   TIGR00962  59 kgialnleedsvGvvilGdyseikeG.sevkrtgevlevpvGdallGrvvnalGepidGkGdieseefsavekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaid.....tiinqkdsk....kdvkcvyvaiGqkestvaqvvekleekgaleytivvaasasdsaslqylaPyagvalaeyfrd.kgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrlleraaklsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsrvGgaaqik 374
                  g +l++  +   v ++  +s+i +  ++ + tge+l++ v +++lGr  n  G+ id   ++ +e++  ++ +     +r   k  +qtGi aid +  + rGq+  i          va       ++++qkd++    ++   v+ a+G    t +   + +ee+ga++ t + +  a+d++  + ++P  + + aey  + +  ++l i  d+s  a a r++s      PGr  yPG ++   s + era ++   +  Gs+t lPi+    +d++  iP     it+Gqi+l+ +l  +Gi P inv  s+sr+  +a   
  MMETSP1061-20121228|5211_1  76 SGQVLEVSGSRAVVQVFEGTSDIDNRkTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAYLDINGMPINPSSRDYPKAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQiarqaSLVKQKDTMdsheENFCIVFGAMGVNMETARFFRSDFEESGAMQRTSLFLNLANDPTIERIITPRLALTTAEYLAYeRDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGRN--GSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMKSAIGE 400
                 45555555556666678888888765156889****************************************998888899999***********************999876665555553311222588999876666445555799****************************************************9872567**************************************************8764..8******************************************************98777554 PP

>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.6   0.1   3.1e-39   9.6e-37      15     406 ..      51     458 ..      40     470 .. 0.84

  Alignments for each domain:
  == domain 1    score: 124.6 bits;  conditional E-value: 3.1e-39
   TIGR01039  15 vefeesklpkiydalkvklekeseelvlevaqhlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepidekgevkkkeklsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGktvliqe......linn..iakeh.sG.lsvfaGvGertreGndlylelkesgvldkvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqerit..stkkgsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsrlldpev....vGeehyevarevqeilqrykelqdiiailGldelseedklvverarkie.rflsqp 406
                 v +++ klpk  + ++++l+  + +   +v +  G   v  +  +++d   r ++ + tg+ +++ v +e+lGr +n  G+ id+  +v +++ l i   + + + ++  + +++tGi  id++   a+G ki +f  aG+    +  +      l+++     +h +  + vf  +G        +  +++esg +++++l     n+p   r+     +lt aey+  e +  vl  + ++  ++ a  evsa    +p   Gy   + t++ ++ er      ++gsit +  + +p dd+t p p  t    ++++ l+r++ ++Gi+p ++ l s srl+++++      ++h +v++++       k++  + a++G + ls ed+l ++   + e +f+sq 
  MMETSP1061-20121228|5211_1  51 VILDNVKLPKYNEIVNLTLRDGE-QRSGQVLEVSGSRAVVQVFEGTSDIDNRKTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAYLDINGMPINPSSRDYPKAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQiarqasLVKQkdTMDSHeENfCIVFGAMGVNMETARFFRSDFEESGAMQRTSLFLNLANDPTIERIITPRLALTTAEYLAYERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGriVGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMKSAIgegmTRDDHGAVSNQLYASYAMGKDVMAMKAVVGEEALSMEDHLYLSFLERFEgKFISQG 458
                 45677899999988888877654.33344444459999999999999999***************************************************99999999*******************************98765544400011144321122223133145677777766666666679*****************************************************************************************98622579************************99999***************************99987522214568888888888888888888889999************9998888765899995 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.8   0.0   9.1e-35   2.9e-32      59     400 ..     100     458 ..      48     473 .. 0.86

  Alignments for each domain:
  == domain 1    score: 109.8 bits;  conditional E-value: 9.1e-35
   TIGR03305  59 argmavkdsgaplkapvgkeilsrvfdvfgntidrreslkdvkwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelih..nlvsqeegvs....lfc...gigercregeelyr.emkeagvldntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriat..tedaaitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstsklatpsiv.gerhyklarevrrvlaqyeelkdiiam...lgleelskedrrvvararrle.rfltqp 400
                  r ++ + +g+ lk+ v +e+l+r f+  g+ id+  ++    +  +   p + + r   + +++tgi aidv+  + rg k  +f  ag+ +  + +++     lv+q++ +      fc   g      e+  ++r +++e+g +++t + +   n+p   r+     alt aey+  ++  +vl ++ ++  + +a  evs    ++p r gy   + t+l+ + er      ++++it +  + +p dd+t p    t       + l r+  ++g++p i+ l s s+l++ +i  g    +     +++ a+y+  kd++am   +g e ls ed   ++   r+e +f++q 
  MMETSP1061-20121228|5211_1 100 NRKTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAYLDINGMPINPSSRDYPKAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHNEVAAQIARqaSLVKQKDTMDsheeNFCivfGAMGVNMETARFFRsDFEESGAMQRTSLFLNLANDPTIERIITPRLALTTAEYLAYERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRivGRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMKSAIGeGMTRDDHGAVSNQLYASYAMGKDVMAMkavVGEEALSMEDHLYLSFLERFEgKFISQG 458
                 46778899**********************************************************************************999888777765224777776653222234421144444567777777589****************************************************************************************987522689*********************99999999***************************99887424444455555678999*******9998555788*********9999999885788874 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   2.2e-10   7.1e-08       4      98 ..      42     140 ..      39     185 .. 0.82
   2 !   75.6   0.0   1.9e-24   5.9e-22     284     524 ..     245     479 ..     159     496 .. 0.90

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.2e-10
   TIGR01043   4 eivrvsGplvvaeglkgakmyevvkvg...eekliGeiiriegdkaviqvyeetsGikp.gepvestGaplsvelGpGllesiydGvqrpldvlkeksg 98 
                 +i+ v+Gplv+ +++k  k +e+v+++    e+  G++++++g +av+qv+e ts i     ++e tG+ l + +   +l++ ++G  + +d+  ++ +
  MMETSP1061-20121228|5211_1  42 TIAGVNGPLVILDNVKLPKYNEIVNLTlrdGEQRSGQVLEVSGSRAVVQVFEGTSDIDNrKTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLA 140
                 5888********************98533256789**********************8725689*********************98887776555444 PP

  == domain 2    score: 75.6 bits;  conditional E-value: 1.9e-24
   TIGR01043 284 llertvliantsnmpvaareasiytGitiaeyfr.dmGydvalvadstsrwaealreisgrleempgeeGypaylasrlaefyeraGrvktlgseeregsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwlqsyslyv.dsvedwfaenvdeewrelrdealellqkeaelqeivrlvGsdalpekeklvlevarlireaflkqnafdevdtysspekqvkilkvi 524
                  ++rt l  n +n p   r  +    +t aey   +  + v+ +    s +a+alre+s+  ee+pg  Gyp y+ + l+  yeraGr+   g   r+gs+t +  ++ p  d++ p+ + t  i      ld +l ++  fp in l s s  +  ++ + +   + +++  + ++  +     +++  +  +vG++al+ +++l l        +f+ q  ++    + s +  ++il++ 
  MMETSP1061-20121228|5211_1 245 AMQRTSLFLNLANDPTIERIITPRLALTTAEYLAyERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIV--G---RNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMkSAIGEGM---TRDDHGAVSNQLYASYAMGKDVMAMKAVVGEEALSMEDHLYLSFLERFEGKFISQGPYEARTIFESLDLAWSILRAF 479
                 59******************************842566788877778899**************************************86..3...569****************************************************966504565554...5678888888999999999999999**********************************999999999999999875 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.7   0.0   2.2e-31     7e-29      61     367 ..      77     394 ..      27     507 .. 0.83

  Alignments for each domain:
  == domain 1    score: 98.7 bits;  conditional E-value: 2.2e-31
   TIGR03324  61 GiafnvdedevGvvllgeysklqa.GdevertgrvldvpvGdellGrvvdplGrpldgkkelasskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGk....taiaid.tilnqkd......knvlcvycaiGqrasavakvvaelrekgaldytivvvtegndppGlqyiapyaatsiaeyfm.eqGrdvlivyddltkharayrelslllrrppGreafpGdifyvhsrllersthlrkerGGGsltalpiieteaqnisayiptnlisitdGqiylspelfelGvlpavdvGksvsrvG 367
                 G  ++v  +   v +++  s+++    + e tg +l + v +e+lGr  +  G+ +d+  ++  +  l i+    +   r      +qtG+  +d +  + rGq+  i+           + ia + +++ qkd      +n   v+ a+G +  +     +++ e ga++ t   +   ndp+  + i+p  a + aey+  e+   vl +  d++++a a re+s      pGr  +pG ++   s + er+  +   +  Gs+t lpi+   + +i+  ip     it+Gqiyl  +l  +G++p ++v  s+sr+ 
  MMETSP1061-20121228|5211_1  77 GQVLEVSGSRAVVQVFEGTSDIDNrKTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAYLDINGMPINPSSRDYPKAMIQTGISAIDVMNSVARGQKIPIFSAAGLPHnevaAQIARQaSLVKQKDtmdsheENFCIVFGAMGVNMETARFFRSDFEESGAMQRTSLFLNLANDPTIERIITPRLALTTAEYLAyERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIVGRN--GSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLM 394
                 5566666555555555555555441568899***************************************9988888899999999********************999876544400003344432466777533332146666799***998887777889*************************************852677789**********************************************998775..7*********************999*****************************963 PP

>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.3e-05     0.004       2     102 ..      40     144 ..      39     187 .. 0.80
   2 !   69.0   0.0   2.1e-22   6.8e-20     285     510 ..     242     462 ..     231     487 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.3e-05
   TIGR01042   2 ygsvkkvsgpvvvaeemagaamyelvrvgh...eelvgeiirlegdkatiqvyeetagltvg.dpvlrtgkplsvelgpgilgnifdgiqrplkaiaeksqsiyi 102
                 y ++ +v gp+v+ ++++     e+v++     e+  g+++ + g +a +qv+e t+ +     +   tg+ l + +   +lg  f+g  + +++  ++  + y+
  MMETSP1061-20121228|5211_1  40 YRTIAGVNGPLVILDNVKLPKYNEIVNLTLrdgEQRSGQVLEVSGSRAVVQVFEGTSDIDNRkTKCEFTGEILKMGVSEEMLGRSFNGSGKVIDQAPKVLAEAYL 144
                 77899**************999999987641125679*********************97651567789999999999999999999988887777766666665 PP

  == domain 2    score: 69.0 bits;  conditional E-value: 2.1e-22
   TIGR01042 285 eesimkrttlvantsnmpvaareasiytgitlaeyfr.dmgynvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsperegsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylka.leefyekeypefvelrtkvkeilqeeeeleeivqlvgkdalaesdkitlevaklikedflqqngytk 510
                 e   m+rt+l  n +n p   r  +    +t aey+  +   +v  +    s +a+alre+s    e+p   gyp y+ + l+++yeragr+       r+gs++ +  ++ p  d++ p+   t  i++    ld++l  +  fp +n+l s s+ +k+ + e    +  +  ++ +++    +  +++  +  +vg +al+ +d++ l   + +   f+ q  y +
  MMETSP1061-20121228|5211_1 242 ESGAMQRTSLFLNLANDPTIERIITPRLALTTAEYLAyERDLHVLTILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRIV-----GRNGSITQLPILTMPNDDITHPIPDLTGYITEGQIYLDRQLDTKGIFPPINVLPSLSRLMKSaIGEGM--TRDDHGAVSNQLYASYAMGKDVMAMKAVVGEEALSMEDHLYLSFLERFEGKFISQGPYEA 462
                 5678*******************************852566777766666788**************************************96.....59*****************************99999**********************9985155544..44567778888888899999999********************99999999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.44
# Mc/sec: 1538.87
//
Query:       MMETSP1061-20121228|5218_1  [L=721]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.19s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 3398.72
//
Query:       MMETSP1061-20121228|5223_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 378.37
//
Query:       MMETSP1061-20121228|5224_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   14.9   0.0     0.0049   14.7   0.0    1.1  1  TIGR01259 comE: comEA protein
     0.0063   14.4   0.0     0.0076   14.2   0.0    1.1  1  TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region
  ------ inclusion threshold ------
      0.016   13.4   0.8      0.017   13.3   0.6    1.2  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P
       0.56    8.4   5.6       0.71    8.1   3.9    1.2  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR01259  comE: comEA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.8e-06    0.0049      57     110 ..       8      61 ..       2      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.8e-06
   TIGR01259  57 ealvnlnkAsleeLqalkGiGpakAkaiieyReenGaFksvddltkvsGiGeks 110
                  a+v+  +A+     a     p +A+ i  y++e+G  + vd+l   + + e++
  MMETSP1061-20121228|5224_1   8 VAQVVAAAATAAATAAAAATDPHRAESIFLYKDEDGPIQDVDELPLLESLLEAT 61 
                 567888899999999999999**********************97766666655 PP

>> TIGR00426  TIGR00426: competence protein ComEA helix-hairpin-helix repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   7.4e-06    0.0076      13      61 ..      16      63 ..       5      66 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.4e-06
   TIGR00426 13 AtaeElqkalsGvGakKAeAivaYREeyGrFktvEdlkkvsGiGekslE 61
                Ata   +   +   +++Ae i  Y++e G+ + v++l   + + e++lE
  MMETSP1061-20121228|5224_1 16 ATAAATAA-AAATDPHRAESIFLYKDEDGPIQDVDELPLLESLLEATLE 63
                44444443.4566799********************9888888888777 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.6   1.7e-05     0.017      50      76 ..       8      32 ..       2      59 .. 0.45

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-05
   TIGR03685 50 ieeaiekaaaapvaaaaaaaaaaeaae 76
                + ++++ aa+a  aa+aaaaa++ +++
  MMETSP1061-20121228|5224_1  8 VAQVVAAAATA--AATAAAAATDPHRA 32
                22333222222..22222222222222 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   3.9   0.00069      0.71      18      45 ..       6      33 ..       4      40 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00069
   TIGR02811 18 lavgaaagavaaatgrvasasaaaepse 45
                ++v+ + +a+a+a  ++a+a+++ + +e
  MMETSP1061-20121228|5224_1  6 VTVAQVVAAAATAAATAAAAATDPHRAE 33
                6777777777777777777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.08u 0.19s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|5230_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 861.07
//
Query:       MMETSP1061-20121228|5229_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.3   5.4      0.021   11.6   3.8    1.3  1  TIGR00414 serS: serine--tRNA ligase
       0.02   12.5   2.0      0.019   12.7   0.4    1.7  2  TIGR01021 rpsE_bact: ribosomal protein S5


Domain annotation for each model (and alignments):
>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   3.8     1e-05     0.021      30     125 ..       4      99 ..       1     151 [. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1e-05
   TIGR00414  30 eklselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpvgkdeednl.e 125
                 e++ ++++++kk++++i +l +++  + k++++kk++k+  + e  k+l+++ + +e+ +++l+++ ++ ++++ + + ++  +  +g+dee  + e
  MMETSP1061-20121228|5229_1   4 ERVDAIQKRMKKAEKQILNLWEENCTIRKTLKQKKRDKRVLVRE-VKQLQKTVKTIEKNNQKLSKSASNPKHIVEEDGPIPMADSMIGSDEERLIiE 99 
                 788999*****************************999987777.5678888888889999998889999999999999999999999999986643 PP

>> TIGR01021  rpsE_bact: ribosomal protein S5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4   9.1e-06     0.019      46      93 ..       2      49 ..       1      55 [. 0.94
   2 ?   -4.0   0.0       1.2   2.5e+03     126     144 ..     129     147 ..     124     148 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.1e-06
   TIGR01021 46 akevteaikkavekakknlikvellegtikhevigksgaakvllkpak 93
                a+e  +ai+k ++ka+k+++++  ++ ti+ ++++k+   +vl++  k
  MMETSP1061-20121228|5229_1  2 ANERVDAIQKRMKKAEKQILNLWEENCTIRKTLKQKKRDKRVLVREVK 49
                89999*******************999*****************9766 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 1.2
   TIGR01021 126 pinvvratldaleklksae 144
                 ++n v+ ++da+e+l++++
  MMETSP1061-20121228|5229_1 129 STNHVSVSVDAMESLRNTK 147
                 6799999999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.38
# Mc/sec: 2295.92
//
Query:       MMETSP1061-20121228|5231_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 770.82
//
Query:       MMETSP1061-20121228|5227_1  [L=1092]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1092 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 3895.46
//
Query:       MMETSP1061-20121228|5233_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.8    4.9  12.0       0.96    7.2   0.1    2.4  2  TIGR03949 bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family


Domain annotation for each model (and alignments):
>> TIGR03949  bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   4.3     0.016        67      18      37 ..      26      40 ..      18      43 .. 0.64
   2 ?    7.2   0.1   0.00023      0.96      13      22 ..      48      57 ..      48      59 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.016
   TIGR03949 18 pigvAicvgggaaaaagagf 37
                p+     ++++aaaaa+a++
  MMETSP1061-20121228|5233_1 26 PL-----AIVAAAAAAAAPA 40
                42.....4456666666665 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00023
   TIGR03949 13 nGGvapigvA 22
                nGG++p++vA
  MMETSP1061-20121228|5233_1 48 NGGIIPTAVA 57
                9******998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 359.97
//
Query:       MMETSP1061-20121228|5236_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 472.11
//
Query:       MMETSP1061-20121228|5237_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 706.14
//
Query:       MMETSP1061-20121228|5241_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-37  127.1   0.1    1.1e-36  124.2   0.0    4.8  6  TIGR02475 CobW: cobalamin biosynthesis protein CobW
     0.0012   16.2   0.1      0.079   10.2   0.0    2.9  3  TIGR00073 hypB: hydrogenase accessory protein HypB
     0.0019   16.1   0.0     0.0076   14.1   0.0    2.0  1  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
     0.0037   14.3   0.0      0.006   13.6   0.0    1.3  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
     0.0089   13.7   0.0      0.017   12.8   0.0    1.4  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
  ------ inclusion threshold ------
      0.039    9.4   0.1      0.059    8.8   0.0    1.1  1  TIGR00606 rad50: rad50


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.2   0.0   1.7e-39   1.1e-36       2     137 ..      58     197 ..      57     208 .. 0.86
   2 !    4.3   0.0     0.005       3.4     170     190 ..     208     228 ..     197     258 .. 0.77
   3 ?   -5.0   2.2       3.4   2.3e+03     236     251 ..     309     324 ..     302     337 .. 0.64
   4 ?    0.7   4.9      0.06        41     235     276 ..     342     384 ..     332     392 .. 0.82
   5 ?   -4.1   0.0       1.8   1.2e+03     274     291 ..     417     434 ..     406     435 .. 0.70
   6 !    9.1   0.0   0.00017      0.11     294     340 ..     478     527 ..     469     529 .. 0.77

  Alignments for each domain:
  == domain 1    score: 124.2 bits;  conditional E-value: 1.7e-39
   TIGR02475   2 akipvtvvtGflGaGkttlirhllena.eGkriavivnefGdlGidGeilkacgieacsee..eivelanGcicctvaddflptlekllareeeldhilietsGlalpkplvqafqwpe.irsrvtvdgvvavvdsaava 137
                 ++ pvt+++GflG+Gkttli+ +l+ + +Gkriavi nefG+     ++++  gi+  s    +++el+nGc+cctv+d ++ tle+l+a++++ld ilie+sG+a p p+   f   + + sr+ +dg+v++vd+  + 
  MMETSP1061-20121228|5241_1  58 TQCPVTILSGFLGSGKTTLIQYILKSPnHGKRIAVIENEFGEGLAIESLIARDGIDPGSGSlqDLIELPNGCVCCTVKDSLVETLENLVAKRSDLDYILIEASGMADPGPIASVFWLDDaLESRLKLDGIVTLVDGRHIL 197
                 578*********************98726************9544445666666765544344*************************************************9997654389*************98765 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.005
   TIGR02475 170 dqlacadlvilnkadlldaag 190
                  q+a ad ++lnk dll++ +
  MMETSP1061-20121228|5241_1 208 RQIAYADRILLNKVDLLQPPS 228
                 69***************9754 PP

  == domain 3    score: -5.0 bits;  conditional E-value: 3.4
   TIGR02475 236 kshhdleeeeeehdh.d 251
                 +s hd+ + e++h+h d
  MMETSP1061-20121228|5241_1 309 NSSHDHTH-EHHHQHgD 324
                 56677555.44555533 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.06
   TIGR02475 235 rkshhdleeeeeehdh.defdsvvvdlgevadvdalaerlekl 276
                  + hh+++++++eh h   + +v  +l+   dv +l++ l+++
  MMETSP1061-20121228|5241_1 342 DHGHHEHHHGHHEHTHtTSISTVSFELSGSVDVRKLNAWLADI 384
                 4579999999999999778999*****9999999998877765 PP

  == domain 5    score: -4.1 bits;  conditional E-value: 1.8
   TIGR02475 274 eklveeedvlrikGfvev 291
                 +k  +e++++r+kG + v
  MMETSP1061-20121228|5241_1 417 HKTSTEQQIFRMKGILSV 434
                 455678899999998765 PP

  == domain 6    score: 9.1 bits;  conditional E-value: 0.00017
   TIGR02475 294 kplrllvqavGkrvd....syydrawkaeearstrlvviGlkdldeaaiaa 340
                  p r++vq+v +  d    +  d  wk ee+r++++vviG+  l +a+++a
  MMETSP1061-20121228|5241_1 478 DPRRFIVQSVYDLWDiqpvTSADLYWKPEEERTGKIVVIGKS-LRQADLRA 527
                 5788888888876652222357999***************98.99988876 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00012     0.079      35      66 ..      65      96 ..      42     112 .. 0.82
   2 ?   -1.0   0.0      0.31   2.1e+02     155     170 ..     210     225 ..     203     226 .. 0.86
   3 ?    1.8   0.0     0.044        30     175     206 ..     248     279 ..     237     282 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00012
   TIGR00073 35 llssiGsGktlllekliealkkevkiavieGD 66
                l +  GsGkt+l++ ++++ ++  +iavie +
  MMETSP1061-20121228|5241_1 65 LSGFLGSGKTTLIQYILKSPNHGKRIAVIENE 96
                33458************************865 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.31
   TIGR00073 155 fkeadlilinkvdlve 170
                 ++ ad il+nkvdl++
  MMETSP1061-20121228|5241_1 210 IAYADRILLNKVDLLQ 225
                 5689*********985 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.044
   TIGR00073 175 dvekvkadvkkinPeveiilvsaktgegldel 206
                  v kv+  +++i+P + i+++s  +   ld +
  MMETSP1061-20121228|5241_1 248 SVLKVETAIRRIHPTAPILRTSFSKVPNLDWI 279
                 678999***************99888777765 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.1e-05    0.0076       4      96 ..      65     158 ..      62     162 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
   TIGR00176   4 ivgykdsGKTtlieklvkelkargyrVatiKHd.aheidldkegkDsarhreaGAeevivasserlavmtetq.eeldLekllkrladlDivLvE 96 
                 ++g+ +sGKTtli+ ++k   ++g r+a+i  +  + + ++   +       +G+ + ++   + ++++t       +Le+l+++ +dlD++L+E
  MMETSP1061-20121228|5241_1  65 LSGFLGSGKTTLIQYILKS-PNHGKRIAVIENEfGEGLAIESLIARDGIDPGSGSLQDLIELPNGCVCCTVKDsLVETLENLVAKRSDLDYILIE 158
                 57999********999875.78999******99988899988766555567899999999988877777654445679****************9 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   8.8e-06     0.006     175     213 ..      56      95 ..      28     119 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 8.8e-06
   TIGR03819 175 vaarlal.lvsGgtGsGkttLLsalLalvaedeRivlved 213
                 +++++ + ++sG  GsGkttL+  +L + ++ +Ri ++e+
  MMETSP1061-20121228|5241_1  56 IHTQCPVtILSGFLGSGKTTLIQYILKSPNHGKRIAVIEN 95 
                 5555554167999*************************97 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.5e-05     0.017      20      45 ..      61      83 ..      46      92 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.5e-05
   TIGR00150 20 dlatvvlLkGdlGaGKttlvkgllkg 45
                +   v +L+G lG+GKttl++ +lk 
  MMETSP1061-20121228|5241_1 61 P---VTILSGFLGSGKTTLIQYILKS 83
                3...889*************998875 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   8.7e-05     0.059      16      46 ..      48      78 ..      44      83 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 8.7e-05
   TIGR00606 16 iedkdkqiidflsPltllvGPnGaGkttiie 46
                 +dk+  ii+   P+t+l+G  G+Gktt+i+
  MMETSP1061-20121228|5241_1 48 NDDKNGGIIHTQCPVTILSGFLGSGKTTLIQ 78
                5799999**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.52
# Mc/sec: 1355.43
//
Query:       MMETSP1061-20121228|5234_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.41
# Mc/sec: 1719.08
//
Query:       MMETSP1061-20121228|5246_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-35  120.6   0.3    1.4e-35  120.5   0.2    1.0  1  TIGR03629 arch_S13P: archaeal ribosomal protein S13P
    7.2e-13   46.8   0.5    6.9e-10   37.2   0.0    2.1  2  TIGR03631 bact_S13: 30S ribosomal protein S13
  ------ inclusion threshold ------
      0.021   11.5   0.0      0.027   11.1   0.0    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family


Domain annotation for each model (and alignments):
>> TIGR03629  arch_S13P: archaeal ribosomal protein S13P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.5   0.2   1.1e-38   1.4e-35       1     117 [.      10     127 ..      10     128 .] 0.99

  Alignments for each domain:
  == domain 1    score: 120.5 bits;  conditional E-value: 1.1e-38
   TIGR03629   1 elkylvriadtDldGnkkvelaLteikGiglrlakaiveklgldkeaklGelsdeevekleeaven.aeeeiPsWllnrrkdyetGedkhlvgsdleltvkeDinrlkkirsyrGiRh 117
                 e+++++ri +t++ G+++v + Lt+ikG+g+r++ +i++k+++d +++ Gel+ +e+ekl ++++n  + +iP W+lnr+kd++tG+  ++  ++++ ++++Di+rlkkir++rG+Rh
  MMETSP1061-20121228|5246_1  10 EFQHILRILNTNVAGKRNVVFGLTKIKGLGRRFTDLICKKAEIDVNKRAGELTADEIEKLVAIIQNpRQFKIPLWFLNRQKDFKTGKYIQVFAQNVDAKLRDDIERLKKIRAHRGLRH 127
                 69****************************************************************99************************************************** PP

>> TIGR03631  bact_S13: 30S ribosomal protein S13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   5.1e-13   6.9e-10       1      60 [.      16      75 ..      16      84 .. 0.95
   2 !    8.4   0.1   0.00044      0.61      71      90 ..     108     127 ..      86     128 .] 0.85

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 5.1e-13
   TIGR03631  1 RiagvdipknkrveiaLtyiyGigktrakkilekagidedkkvkdlteeelekireviee 60
                Ri + +++ +++v+++Lt+i G+g+  +  i++ka+id +k++ +lt +e+ek+ ++i++
  MMETSP1061-20121228|5246_1 16 RILNTNVAGKRNVVFGLTKIKGLGRRFTDLICKKAEIDVNKRAGELTADEIEKLVAIIQN 75
                8999*****************************************************986 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00044
   TIGR03631  71 evslnikrlvdigcyrGlRh 90 
                 +++ +i rl+ i+++rGlRh
  MMETSP1061-20121228|5246_1 108 KLRDDIERLKKIRAHRGLRH 127
                 556789************** PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     2e-05     0.027     283     332 ..      24      75 ..       4      82 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2e-05
   TIGR00275 283 pkktvknilkgl..lpkklaellleelgideekkaaelskkeleklvellkk 332
                 +k++v   l+++  l +++++l++++++id +k+a el+++e+eklv ++++
  MMETSP1061-20121228|5246_1  24 GKRNVVFGLTKIkgLGRRFTDLICKKAEIDVNKRAGELTADEIEKLVAIIQN 75 
                 45555555555556999*******************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 767.94
//
Query:       MMETSP1061-20121228|5247_1  [L=829]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-19   64.9   0.9    9.5e-13   44.5   0.0    2.1  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      4e-13   46.8   0.0    3.7e-11   40.3   0.0    2.3  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.4e-11   41.4   0.0      4e-10   36.6   0.0    2.3  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    8.5e-11   38.6   0.2    1.9e-10   37.5   0.0    1.5  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.2e-06   25.8   1.4    0.00012   19.1   0.0    3.3  3  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    2.7e-06   24.2   0.5     0.0021   14.6   0.0    2.4  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    2.6e-05   20.6   0.5    7.6e-05   19.0   0.0    1.9  2  TIGR00580 mfd: transcription-repair coupling factor
     0.0021   14.1   0.0     0.0021   14.1   0.0    2.9  3  TIGR00631 uvrb: excinuclease ABC subunit B


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.9e-15   9.5e-13      14     153 ..     214     364 ..     205     384 .. 0.86
   2 !   18.7   0.2   1.2e-07   6.1e-05     278     349 ..     614     686 ..     587     699 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 1.9e-15
   TIGR04121  14 prafQkevleaaeegesgll.iapTGaGKTlavflpsliela............akekpk...kglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaekl..fkdlravvvDElHeLl 153
                 p++ Q ++l+a + g+  l+  apTG+GKTla  lp+l +++             +   +   k +++l +tP + La++i    e+       +  v l  G +  ++++   +k+p i+l Tp  l  +lss d+e+l  +++++ +v+DE   + 
  MMETSP1061-20121228|5247_1 214 PTPIQAATLSASTMGRRNLVgAAPTGSGKTLAFLLPILNSMLqdsgedsngndgDT---SlkaKKVQALIMTPTRELATQIYSECEKL----VPNQCVTLVGGIALVKQKRLLATKRPPIVLATPGRLWAMLSSGDNEHLrdLSHIQFLVLDEADRMT 364
                 7789***************9557******************999888877655333...144599**************998876665....56677888899999999999*********************99988765599*********87765 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.2e-07
   TIGR04121 278 eialhHgsldkeqRekveaalkagklra.vvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrlde 349
                 ++ + H+ +++ +R kv + lk+ + r+ vvcT     G+D   v +v++   ++ v  ++ R GR++  ++e
  MMETSP1061-20121228|5247_1 614 NVRILHAHMQQRARFKVIESLKDPEKRViVVCTDVAARGLDIPSVATVVHYDVARAVDTFVHRSGRTARGMGE 686
                 57789******************98886379***********************************9988876 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.0    0.0077       3.9       8      48 ..     210     251 ..     204     296 .. 0.87
   2 !   40.3   0.0   7.3e-14   3.7e-11     214     319 ..     574     682 ..     558     708 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0077
   TIGR00614   8 glesfrpvqlevinavlegrdalv.vmatGgGksLCyqlpav 48 
                 g+ s  p q  ++ a   gr +lv   +tG Gk L + lp +
  MMETSP1061-20121228|5247_1 210 GFASPTPIQAATLSASTMGRRNLVgAAPTGSGKTLAFLLPIL 251
                 6667778999999999999977763789*********99976 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 7.3e-14
   TIGR00614 214 edllkfivkefkgksG..iiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqv.vvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGR 319
                 + l  ++++  +g+sG  +++C+s + v +v a+ q +g + +  ha ++++ar +v +     e +v vv t     G++ p v  v+hy++++ ++++   sGR  R
  MMETSP1061-20121228|5247_1 574 SHLYAYLMTTEQGSSGpcLVFCNSIAAVRRVGATFQTLGFNVRILHAHMQQRARFKVIESLKDPEKRViVVCTDVAARGLDIPSVATVVHYDVARAVDTFVHRSGRTAR 682
                 4577899999999998779*****************************************996554441344544578****************************988 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.02        10      10      50 ..     210     251 ..     202     256 .. 0.77
   2 !   36.6   0.0   7.9e-13     4e-10     208     317 ..     569     682 ..     555     698 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.02
   TIGR01389  10 GyeeFRggqeeiie.evldgrdvlavlPtGGGkslCYqvPaL 50 
                 G+++  + q++ ++ + + +r++++  PtG Gk l + +P L
  MMETSP1061-20121228|5247_1 210 GFASPTPIQAATLSaSTMGRRNLVGAAPTGSGKTLAFLLPIL 251
                 5555566666655514567789999************99977 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 7.9e-13
   TIGR01389 208 kenkkkqlleylkkere.ksG..iiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvk.vvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGR 317
                 +++k+++l  yl + ++ +sG  +++++s + v ++ ++ ++ g+++ + ha ++++ R +  e+    +++ +vv t     G+d + v  v+h+d+ ++++++   +GR  R
  MMETSP1061-20121228|5247_1 569 QRHKDSHLYAYLMTTEQgSSGpcLVFCNSIAAVRRVGATFQTLGFNVRILHAHMQQRARFKVIESLKDPEKRvIVVCTDVAARGLDIPSVATVVHYDVARAVDTFVHRSGRTAR 682
                 456677788888766655898779*****************************************99866551677899999*****************************998 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   3.6e-13   1.9e-10      19     167 ..     196     361 ..     183     365 .. 0.85
   2 ?   -2.6   0.1      0.47   2.4e+02     291     373 ..     600     683 ..     596     697 .. 0.73

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 3.6e-13
   TIGR03817  19 awvepdvvaaleaaGieapwqhqaraaelahaGehvvv.atgtasGkslayllPvlsalaed................pratalylaPtkalaadqlravkeleerdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdech 167
                 a +++++ + l + G ++p   qa++  +++ G++  v a+ t sGk+la+llP+l+++ +d                ++ +al ++Pt+ la+     +++l  ++  + +      +++r  + ++  +vl+ P  l   +    +   + l +++++v+de+ 
  MMETSP1061-20121228|5247_1 196 AHLHDKLLESLYRLGFASPTPIQAATLSASTMGRRNLVgAAPTGSGKTLAFLLPILNSMLQDsgedsngndgdtslkaKKVQALIMTPTRELATQIYSECEKLVPNQCVTLVGGIALVKQKRLLATKRPPIVLATPGRLWAMLSSGDNEHLRDLSHIQFLVLDEAD 361
                 56789999999**************99999999765552788*******************967666666665555555999**********************9776555544455677888899999************99999******************96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.47
   TIGR03817 291 akerlaevdaelaervaayraGylaedrreleralkdGellg.vaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrr 373
                 a +r++ + ++l+  v    a   +  r ++ ++lkd e +  v++t+    G+di  + +vv       v ++  ++Gr+ r 
  MMETSP1061-20121228|5247_1 600 AVRRVGATFQTLGFNVRILHAHMQQRARFKVIESLKDPEKRViVVCTDVAARGLDIPSVATVVHYDVARAVDTFVHRSGRTARG 683
                 555666666666666666667667777777778888877665256788889999999999999999999999999999998885 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.2      0.91   4.7e+02     195     195 ..     149     149 ..     104     199 .. 0.56
   2 !    4.0   0.1    0.0096       4.9       4      22 ..     234     252 ..     231     317 .. 0.82
   3 !   19.1   0.0   2.4e-07   0.00012     218     339 ..     584     703 ..     534     720 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.91
   TIGR01587 195 n 195
                 +
  MMETSP1061-20121228|5247_1 149 K 149
                 1 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0096
   TIGR01587   4 ieAPtGyGKteaallwalk 22 
                   APtG+GKt a ll  l+
  MMETSP1061-20121228|5247_1 234 GAAPTGSGKTLAFLLPILN 252
                 57********887775555 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 2.4e-07
   TIGR01587 218 alkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkk.nekfvivaTQviEvslDi.sv.dvlitela.pidsLiQRlGRlaRygrkir.enrevyvltelledk 339
                 +  + ++ l+++N++   + +   ++  + +  + +lH+ +++  r k     +++lk+ ++  ++v T v+  +lDi sv  v+  ++a  +d  + R GR aR g +++  +  +  + ++++++
  MMETSP1061-20121228|5247_1 584 EQGSSGPCLVFCNSIAAVRRVGATFQTLGFN--VRILHAHMQQRARFKV----IESLKDpEKRVIVVCTDVAARGLDIpSVaTVVHYDVArAVDTFVHRSGRTAR-GMGEGaVGSSLSLIAPAEDKG 703
                 555677899******9999999999977776..99*******9999887....677777444457899**********444134445666368************.555554556666666665555 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.1   0.00074      0.38     285     327 ..     276     316 ..     268     322 .. 0.77
   2 !   14.6   0.0   4.2e-06    0.0021     475     538 ..     603     669 ..     587     704 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00074
   TIGR00643 285 yqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkk 327
                  q+++m PT  LA+Q y ++++l+++    v+l+ g    k+k
  MMETSP1061-20121228|5247_1 276 VQALIMTPTRELATQIYSECEKLVPNQ--CVTLVGGIALVKQK 316
                 599*********************984..56666555555554 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4.2e-06
   TIGR00643 475 elkkaf..pklnvallhgrlksdekeevleeFrekevd.iLvaTtviEvGvdvPnatvmviedaeRf 538
                 ++ ++f    +nv +lh+++++  + +v+e+ ++ e   i+v+T v   G+d+P ++ +v +d  R 
  MMETSP1061-20121228|5247_1 603 RVGATFqtLGFNVRILHAHMQQRARFKVIESLKDPEKRvIVVCTDVAARGLDIPSVATVVHYDVARA 669
                 555555223479*********************977652678*************999998887775 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.4      0.41   2.1e+02     167     190 ..     135     148 ..      28     193 .. 0.55
   2 !   19.0   0.0   1.5e-07   7.6e-05     615     733 ..     544     662 ..     537     671 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.41
   TIGR00580 167 isaerlsleveelvleakalslse 190
                  sae           ++k+ + ++
  MMETSP1061-20121228|5247_1 135 DSAE----------PKKKKKKKKQ 148
                 1111..........0011111111 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.5e-07
   TIGR00580 615 slsgirdlSiiatPPedRl.pvktfvkeyddelvkeairrEllRgGqvfyvhnriesieklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefd.vLvcTtiiEsGidipnaNTii 733
                 sl++ ++ S + +PP   l ++k   +++d++l +  +  E    G   +  n i+ +++++++ ++l  ++r  i H++m+++   +v+++ ++ e   + vcT +   G+dip++ T++
  MMETSP1061-20121228|5247_1 544 SLANHKQSSGVRLPPGLSLeQIKCTQRHKDSHLYAYLMTTEQGSSGPCLVFCNSIAAVRRVGATFQTLGFNVR--ILHAHMQQRARFKVIESLKDPEKRvIVVCTDVAARGLDIPSVATVV 662
                 677888889999999755416888888889999999999*****************************76655..67888999999********987761568****************87 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.9   4.3         8   4.1e+03     574     618 ..     127     153 ..     108     186 .. 0.38
   2 !    5.2   0.0    0.0021       1.1      54      83 ..     275     304 ..     269     307 .. 0.88
   3 !   14.1   0.0   4.2e-06    0.0021     462     541 ..     607     682 ..     584     691 .. 0.82

  Alignments for each domain:
  == domain 1    score: -6.9 bits;  conditional E-value: 8
   TIGR00631 574 eyneehgitPktikkkikeilekkekekekeakkkkkkaaeeaek 618
                 + ne+++i+  + kkk k+                  k+++++++
  MMETSP1061-20121228|5247_1 127 KNNETQQIDSAEPKKKKKK------------------KKQKDKAN 153
                 1122222222211111111..................11111111 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0021
   TIGR00631  54 qkPtlvlahnktLaaqLyeelkelfPenav 83 
                 +  +l++++ + La+q+y+e  +l+P+  v
  MMETSP1061-20121228|5247_1 275 KVQALIMTPTRELATQIYSECEKLVPNQCV 304
                 5569***********************988 PP

  == domain 3    score: 14.1 bits;  conditional E-value: 4.2e-06
   TIGR00631 462 ylkelgikvkylhseidtlerveiirdLrkgefdvlv.GinLLreGlDlPevslvailDadkeGflrsersLiqtiGraar 541
                  ++ lg +v+ lh  ++   r ++i++L++ e  v+v   ++   GlD+P v+ v   D       r+  +++   Gr ar
  MMETSP1061-20121228|5247_1 607 TFQTLGFNVRILHAHMQQRARFKVIESLKDPEKRVIVvCTDVAARGLDIPSVATVVHYDV-----ARAVDTFVHRSGRTAR 682
                 5788999***********************99988752678999*********9998885.....4555555555566665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.55u 0.12s 00:00:00.67 Elapsed: 00:00:00.46
# Mc/sec: 2378.67
//
Query:       MMETSP1061-20121228|5250_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 364.54
//
Query:       MMETSP1061-20121228|5249_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 1166.61
//
Query:       MMETSP1061-20121228|5235_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-09   34.0   0.3    6.4e-09   33.7   0.2    1.0  1  TIGR01632 L11_bact: ribosomal protein L11


Domain annotation for each model (and alignments):
>> TIGR01632  L11_bact: ribosomal protein L11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.2   1.5e-12   6.4e-09       5     139 ..      10     143 ..       7     144 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.5e-12
   TIGR01632   5 aiiklqveagkAkPsppvGpalgqkgvnimeFckefNartkdlekgvvvpvvitvyeDksftfivktppvsvllkkaag..vekgskkpkkekvgkitlkqvreiAklKlsDlnaleleaavkiiaGtAksmGieve 139
                 +i+ +   +g+ +P+  + p +g  g++  +   +  + tkd  kg++v v +tv + +  t+ +  p+ s l+ ka++      +k  + ++ g++tl+qv +iAk   +   a++l + vk i Gt +s+G +v+
  MMETSP1061-20121228|5235_1  10 KIVIMRTVGGEVAPASALAPKIGPLGLSPKKVGEDIQKGTKD-WKGLNVTVKLTVVNRQ-ATVSMI-PSSSSLVMKALNepYRDRKKVKNVKHDGNLTLDQVIDIAKEMRERSCARKLAGTVKEILGTCNSIGCTVN 143
                 5667777899********************************.99**********9755.566665.555555555554123444455666788*************9999999*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 983.92
//
Query:       MMETSP1061-20121228|5248_1  [L=735]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-64  214.8  16.3    5.6e-64  214.4  11.3    1.1  1  TIGR00815 sulP: sulfate permease
     0.0082   13.4   0.3      0.015   12.6   0.2    1.3  1  TIGR02825 B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase


Domain annotation for each model (and alignments):
>> TIGR00815  sulP: sulfate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.4  11.3   2.7e-67   5.6e-64      13     563 ..     135     669 ..     124     671 .. 0.85

  Alignments for each domain:
  == domain 1    score: 214.4 bits;  conditional E-value: 2.7e-67
   TIGR00815  13 k.lkgDliAGltvgillvPqamayaklaglsPeyGLYtsfvaaliyalfgtSrdiaiGpvavlslllgkvvaevlkkakedvdai.kiattltllaGivqvllGllrlGflveflskavisGFmtGaaitIllsQikkllGlsivntredtlkvvistwkslpntkl...anlldlviglvlllfllatkklakrlkkllfliavaelvvvivatlavsvgksskkrgvsilghipsgpevvpekildgellsalapdaiaialvgllesiaiaksfarmkgy...kvdanqElvaiGiaNiigsffscypatgslsrsavkakagcktalsavvtaivvllvllvlapllllipkavlaaiiivavrglvdlkelyklwkvsklDvvvllvtvflvvftsieiGllvgvalSlallllriakpkaklLgrveeaevlesikeypkaltppgvlvyrvdgplyfanaerlkdrllkriedeesareakrdrlkvvildfsavaqlDtsgihalkelrkeleargielllanvakevreklkrseleekigeellfvsvs 563
                 k l++ +++G tv+i+ vP ++a++ +ag++P  GL +    a++  ++g+ + +++G+ ++l++++ k+ a  +  a   v+ + ++     + +G++q+ + ++rl+ lv+++++  ++GFm+G+ai+I+++Q++++   ++ ++      v +  w s+  + l     l  +++ + ++ f     k++   ++ l+   v +l+ +++   ++  g +  ++   i+g  p +   +p +  d+++++++++ ai +a +g++es+++ ++  +++++     d+nqE +a+G+aN+i ++f ++   +++ +s+++++ g+++++s+ +++i++ll  lvl+p + l+p a+l  ++  +v+ ++++k++  l+  + +D v++lv+ ++ vft++ i+++ g++lS+++ ++       ++ + ve+ + +       + + + gv+ + v g+++f +  ++ + +   ++        +    ++v+ldf++ + +D s+++a++ l   +   g ++++ n++ +    ++r + ++++ +e+++ +v+
  MMETSP1061-20121228|5248_1 135 KvLYKEVVSGFTVAIMQVPESIAFSFVAGVPPLSGLQATWWMAFVTGILGGKPGMISGAAGALAVVVTKLTASDGVLAYLTVEERlNVLYMTMFVCGLFQIGFAVFRLAKLVRLIPETGMIGFMNGLAIIIFMAQLPAFQYCTS-EPLFIECTVDERQWLSFGGQPLelsLVLVHVAMCMAIMHFFPKIPKIGSMIPASLVGLLVGTLLEWTLFRKVIGQGTRTVEETAPIAGAPPMF--DWPSIPQDSQTIQTMLVFAIQLAAIGAVESVLTLQACNEITDTvpkISDSNQECFAQGLANLICGLFRAMGGDAMIGQSTINIMNGARHRVSSTMSGIFMLLFTLVLSPFINLLPIATLTGVLFIVVVSTFQWKTFVILRYGRLSDSVAILVVTIVAVFTNLAIAIAAGIILSALVHAWDSGA---HVEADVEHKDMIV------NGKRVDGVKYVHVRGAIFFSSTRKFVNMFHIGED--------P----NTVVLDFADAIVVDHSAVAAIQGLTHRYALAGKRVIIRNIQSKCVGRMRRTHGDHDKFHEQISHKVR 669
                 2599******************************************************************99988776665555415555556789*******************************************98888.455555667788999999996543333444444444444444444555555555555555555555555555555577778888888888888..8999999***********************************9555589******************************************************************************************************************************99998854...5555566655555......666677********************66654444........3....79************************************************99887777777777665 PP

>> TIGR02825  B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.2   7.1e-06     0.015     105     172 ..     149     216 ..     115     251 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 7.1e-06
   TIGR02825 105 ltewpdtlplslalgtvgmpgltayfglleicgvkggetvlvnaaagavgsvvgqiaklkgckvvgaa 172
                 +++ p+++ +s+  g   + gl a + +  + g+ gg+  +++ aaga+  vv +++   g+    ++
  MMETSP1061-20121228|5248_1 149 IMQVPESIAFSFVAGVPPLSGLQATWWMAFVTGILGGKPGMISGAAGALAVVVTKLTASDGVLAYLTV 216
                 567899999********************************************999888776555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 2853.29
//
Query:       MMETSP1061-20121228|5255_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1106.19
//
Query:       MMETSP1061-20121228|5260_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 1128.73
//
Query:       MMETSP1061-20121228|5258_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.24
# Mc/sec: 2678.28
//
Query:       MMETSP1061-20121228|5264_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-11   39.8   0.0    4.8e-11   39.7   0.0    1.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.2e-14   4.8e-11     266     325 ..      53     126 ..      15     135 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.2e-14
   TIGR01982 266 esflkqvlrdgfFHaDlHpGNilvakd..............gkiialDfGivgrlseeerrylaeillgflerd 325
                  +   q++++g+FHaD+HpGNilv                 +ki ++D+G   rl+++e+r +a+++lg+ +  
  MMETSP1061-20121228|5264_1  53 DVHGYQIFHEGLFHADAHPGNILVVPSnehdgkhknknknkNKIGLIDYGQCKRLTPDEQRRIARLILGVANDA 126
                 455579*****************97666789**************************************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 723.30
//
Query:       MMETSP1061-20121228|5262_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 1732.89
//
Query:       MMETSP1061-20121228|5268_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 448.76
//
Query:       MMETSP1061-20121228|5259_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 1251.26
//
Query:       MMETSP1061-20121228|5263_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-16   57.6   1.2    1.1e-06   26.1   0.0    4.0  4  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase
  ------ inclusion threshold ------
       0.05    9.5   0.1      0.067    9.1   0.0    1.1  1  TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2


Domain annotation for each model (and alignments):
>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   5.1e-10   1.1e-06      11      68 ..      29      91 ..      24     108 .. 0.79
   2 !   15.2   0.0   1.1e-06    0.0023      78     115 ..     124     162 ..     116     172 .. 0.87
   3 !    9.6   0.0   5.6e-05      0.11     119     164 ..     210     258 ..     203     260 .. 0.79
   4 !    3.5   0.1    0.0042       8.6     200     217 ..     258     275 ..     255     289 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 5.1e-10
   TIGR03413 11 yiwllkdekseavvvDpg.....eaepvlealeekglkleaillTHhHaDHvggvaellekfp 68
                   l+ d++++avvvDp+     e + + ++le+++ ++++illTH H DH  gv+  ++++p
  MMETSP1061-20121228|5263_1 29 LYALVCDSTRDAVVVDPScgtarEFRALEAFLEKHEATPKHILLTHGHPDHLLGVSLAMDAWP 91
                44566666679*****973322233568899***********************998888776 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 1.1e-06
   TIGR03413  78 ripgltkevkegdevel.lelevevlevpGHtlgHiayy 115
                  +p+ t+++++gd v++  + e+ v+++pGH  gH+a +
  MMETSP1061-20121228|5263_1 124 PLPEPTHSLADGDVVRVgDSIELAVVHTPGHSPGHVALV 162
                 567889***********55679**************976 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 5.6e-05
   TIGR03413 119 ekvlFcgDtLfsaGCGr..lfegtaeqmleslqklaaLpe.etkvycaH 164
                  +vl +gD Lf    Gr    +++++++++sl++l +L + +  v ++H
  MMETSP1061-20121228|5263_1 210 GNVLISGDLLFHGSVGRtdFHNSSMDDLYASLRRLYELFDdDSIVLSGH 258
                 47899******99999944578999***********9965155666777 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.0042
   TIGR03413 200 ptlPstlaeekatNpFLr 217
                  t P+ l++e++ NpF+ 
  MMETSP1061-20121228|5263_1 258 HTTPTFLKKERTSNPFVD 275
                 589*************85 PP

>> TIGR00361  ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   3.3e-05     0.067     483     522 ..      58      97 ..      49     132 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 3.3e-05
   TIGR00361 483 PyLqakgiklealiLshedqDhaGgaeiiLkaypvvrlvi 522
                  +L++++  +  ++L+h + Dh  g++  + a+p   l  
  MMETSP1061-20121228|5263_1  58 AFLEKHEATPKHILLTHGHPDHLLGVSLAMDAWPEASLHL 97 
                 69********************************998864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1437.74
//
Query:       MMETSP1061-20121228|5271_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 838.77
//
Query:       MMETSP1061-20121228|5272_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2840.21
//
Query:       MMETSP1061-20121228|5273_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       398  (0.0970258); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 2065.63
//
Query:       MMETSP1061-20121228|5274_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|5265_1  [L=810]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-87  291.0   0.0    4.1e-87  290.4   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.4   0.0     1e-90   4.1e-87      38     431 ..     267     675 ..     243     680 .. 0.88

  Alignments for each domain:
  == domain 1    score: 290.4 bits;  conditional E-value: 1e-90
   TIGR01982  38 vskeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrl..rptevvkefektlkeEldlrlEaanaselkenfkndkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgf...........lerdykrvaevhleagyvpsdtdlaeleqairavgepivgkplkeis..igklL.aklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklikkkls 431
                  +++++++ ++++ +r+ l  lGP+f+KlGQv+stR+D+lp+ +++ L+ Lqd+vp+f+++ a+++i++elg p +e+F++f+e+Pl aAS++Qvh+A   +g++Va+Kv+R g+++ ++ d+k l++la l++k+ p+++    + + + +e e+ l  E+d+  Ea n +++++ fk+ ++++vPe y +l + rvlt+e+++  +++d+ek+++ Gld++ la++ +  fl+q+++ ++FH D+HpGN+ v+++g++++ DfG++ +l+++ r+ + +  +++           l +++k++++   eag++    d  + e+  r ++  + ++ + + s  i + L ++l  +te+   + ++ ++++ +++  vEG+g+ ld ++d+ k+a+p+v+k++ ++ +
  MMETSP1061-20121228|5265_1 267 DEEIKQAQIDAATFIRDGLLTLGPTFVKLGQVVSTRTDVLPKTFTDVLKTLQDEVPAFSGARAKEIIAKELGAPTDEIFTDFSETPLKAASLGQVHTAY-YKGQKVAIKVQRAGLKELFDVDLKNLRKLAVLLDKFDPKSDGAdrDWVSIYEESERLLYLEIDYLNEADNGERFANDFKDIDYVRVPEFYRDLSTPRVLTMEFVESLKLTDIEKIESLGLDRELLAKRTADAFLRQIVETSYFHCDPHPGNLCVDEKGNLVYYDFGMMDELKPNVREGFRKFCTALfaggpmvndatLAKNAKQLIDGVEEAGVLARGSDRLAVEKLARYFMRAFKNNQIGKSSgnIKQTLgTDLQTLTENDSFRFPSTFTFIFRAFASVEGIGKGLDEKFDIGKLAQPFVEKFTDSQKA 675
                 444555567888999***********************************************************************************7.689*********************************998875511688999*************************************************************************************************************************999877766555541111212222257899**************99998888887777776666666655432255666367999999999****************************************9987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 3054.60
//
Query:       MMETSP1061-20121228|5278_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-24   82.9   0.0    5.2e-24   82.7   0.0    1.0  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase


Domain annotation for each model (and alignments):
>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.7   0.0   1.3e-27   5.2e-24     134     227 ..      22     113 ..       3     119 .. 0.88

  Alignments for each domain:
  == domain 1    score: 82.7 bits;  conditional E-value: 1.3e-27
   TIGR00031 134 eiddpdiellaeflyrkvykpytvkqWGlkleeldeevikrvkvvlsedssyfsdriqglPkgGytklvekmldhplidlklnskaellklkde 227
                 ++++  ++ ++e ly+ +++pyt kqW  +++el +ev+ r++v+   d++yf d +q+lP +Gyt+++e +l hp id++ln  ++ ++ +d+
  MMETSP1061-20121228|5278_1  22 NSEEMALSRVGERLYELIFRPYTIKQWNKEPKELGPEVTARIPVRNNLDNRYFGDPYQALPTNGYTAIFENLLCHPKIDVRLN--TDYFQIRDK 113
                 345566899**************************************************************************..677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 725.94
//
Query:       MMETSP1061-20121228|5282_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 470.57
//
Query:       MMETSP1061-20121228|5279_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1569.60
//
Query:       MMETSP1061-20121228|5277_1  [L=907]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       333  (0.0811799); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.36
# Mc/sec: 3325.39
//
Query:       MMETSP1061-20121228|5280_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 641.09
//
Query:       MMETSP1061-20121228|5283_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 1957.84
//
Query:       MMETSP1061-20121228|5287_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 422.37
//
Query:       MMETSP1061-20121228|5288_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 1184.76
//
Query:       MMETSP1061-20121228|5284_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.42
# Mc/sec: 989.92
//
Query:       MMETSP1061-20121228|5289_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 240.41
//
Query:       MMETSP1061-20121228|5286_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-15   54.8  17.7    5.9e-09   33.1   2.0    2.3  2  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   2.0   1.4e-12   5.9e-09     210     284 ..      17      91 ..       8     102 .. 0.90
   2 !   28.5   3.9   3.6e-11   1.5e-07     288     374 ..     138     224 ..     134     245 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.4e-12
   TIGR00797 210 wealkrllklglplllrvilvsflvtllallvarlGstalAahqvalqvesllfmlafGlaiAvsalvGqalGag 284
                 ++++  +l  +  +l + +++ + +t+++++++r+G++ +Aahqv+l++  +l+m +++ ++ ++ l++q+l++ 
  MMETSP1061-20121228|5286_1  17 RAVIASILGANASMLTKSFSMLVFYTAATSVATRMGAVHMAAHQVCLSLFWFLTMWLDSGGVSAQLLLSQSLSQS 91 
                 566777888888899999*****************************************************9876 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 3.6e-11
   TIGR00797 288 rakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsaw 374
                 r+++ + +++ + l+ gl + +++ + + f++ lft+dp v +l+++ l+ ++++  + +++ vl+G  +Ga +++++a+ t ++++
  MMETSP1061-20121228|5286_1 138 RVRSLIGYMVRFALVQGLAFSALVWATAGFLPALFTSDPTVRALTSRCLPHMVVQMTLVSVCLVLEGLSIGAQQFRFTAVGTALATV 224
                 677778889999********************************************************************9998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       319  (0.0777669); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1400.79
//
Query:       MMETSP1061-20121228|5285_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-84  280.0   0.9      8e-84  279.3   0.6    1.2  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    8.3e-55  184.3   0.0    1.3e-54  183.6   0.0    1.3  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    8.7e-40  134.5   1.1    1.7e-39  133.5   0.8    1.4  1  TIGR00485 EF-Tu: translation elongation factor Tu
    2.7e-32  110.0   0.3    3.7e-32  109.6   0.2    1.2  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    7.6e-19   66.0   1.0    5.6e-18   63.2   0.7    2.1  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    1.9e-18   63.9   0.1    2.4e-18   63.5   0.0    1.1  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    7.4e-17   59.1   3.0    5.2e-16   56.3   2.1    1.9  1  TIGR00487 IF-2: translation initiation factor IF-2
    3.7e-16   56.4   0.1    6.4e-16   55.6   0.1    1.3  1  TIGR01393 lepA: GTP-binding protein LepA
    9.5e-12   41.7   0.2    1.5e-11   41.0   0.2    1.2  1  TIGR00484 EF-G: translation elongation factor G
    6.4e-11   39.2   0.4    1.2e-10   38.3   0.3    1.4  1  TIGR00491 aIF-2: translation initiation factor aIF-2
    4.5e-10   37.4   0.2    1.5e-09   35.7   0.1    1.9  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.1e-09   35.1   0.0    1.5e-09   34.6   0.0    1.1  1  TIGR00503 prfC: peptide chain release factor 3
    5.1e-08   29.3   0.2    5.1e-08   29.3   0.2    1.4  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    7.7e-05   19.7   0.0      0.084    9.7   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0036   14.5   0.3       0.06   10.5   0.2    2.3  1  TIGR00436 era: GTP-binding protein Era
  ------ inclusion threshold ------
      0.032   11.2   0.1       0.58    7.1   0.0    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.3   0.6   3.1e-86     8e-84       3     420 ..     182     602 ..     180     604 .. 0.91

  Alignments for each domain:
  == domain 1    score: 279.3 bits;  conditional E-value: 3.1e-86
   TIGR00483   3 kekehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgele....vqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvvkksen..apwykgktllealdkleapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepagvsgevksiemhh.........eqieqaepgdnigfnvrgvskkdirrgdvagdadnppkvakeftaqivvlqhpga.itvgytpvldahtaqvacrfvellkkldprtgkvkeenpkflktgdaaivklkptkplviekvkeipklgrfairdmgqtvaagvvi 420
                  +k++l ++++ghvd+gkstl+g++l ++ +i++r  +k     +e      + +++ld+ + er rgvt+++  k ++ +k+++ ++dapgh dfi  mitga++ad+a+lv+a+  ge+e      +qt+eh++lar lg+ q+iva+nk+d   ++++++e ++ +v ++l +  +kp+ ++f+p+s++ g+nv  +++     wykg+tllea++++ + ++ v+kp r+ + dv+   g g v  grv  g + +g+ +v  p g   +v  +e             ++  ++ gd + + v +     +  g++   +   p  +++ +a+i+v++  ++ i  g   +++ h+ +v   +++l   + +r g vk+e+p+ l  g +a v l+ +  +v+e ++e   lgrf +r  g t+a+gv+ 
  MMETSP1061-20121228|5285_1 182 DQKSQLSMVILGHVDAGKSTLMGQILVQTNQISKRDAAK-----QE------NLSWLLDENESERARGVTMEIGTKTLRVPKHDIVVLDAPGHHDFIPVMITGAANADVAILVIAAVTGEFEagftGGGQTKEHIMLARGLGVTQIIVAVNKLDVEGWKQDRYESIQSQVKDFLLQQEFKPKRMQFVPISGLAGENVKTRTSPqlSQWYKGPTLLEAVNNFFPANRQVEKPPRFIVTDVFA-EGKGIVTRGRVIQGFVEVGDSLVVLPVGDIVKVSKLEHLQppsdgaddpRRLAVGMAGDTVQLLVTDTDIMRLSIGNILCFPSARPPLTRKANARIIVMEDLAVpIIRGAQVIFHMHSLDVPTVLTKLH-AILKRDGSVKKERPRALTKGVSARVELTVSDRIVMEPFSECRSLGRFVLRRGGETIAIGVID 602
                 5899**************************999987763.....33......479*****************************************************************997776679********************************************************************9988642268********************************97.799*************************99999999865422222222245777889999999999999999999***99999988889999*******986654999*************99888876.566899*****************************************************985 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.6   0.0   5.2e-57   1.3e-54       2     406 .]     188     601 ..     187     601 .. 0.85

  Alignments for each domain:
  == domain 1    score: 183.6 bits;  conditional E-value: 5.2e-57
   TIGR02034   2 rfltcGsvddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvle.......qtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdylal..aeklgvsdvtviPlsalkGdnvveks..esmpWyeGptllevletveveesaeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsgresrvarivtfd.........gelekaeaGeavtlvlede..idisrGdllaaadeapevadqfaaelvwlade..allpGksyklklgtkkvrasvaeikhkvdvntlekea.akelelneiglvklsldeeialdayeenrttGafilidrlsnatvgaGli 406
                  ++  G vd Gkstl+G++l  t+qi++       rd++k    +   +l+ l+d  ++er +g+t+++  + +   k   +v d+PGh  +   m+tga+ ad+a+l++ a +G  e       qt+ h ++a  lG+ ++++avnk+d+ +++++ +e+i+++ + +   ++++ ++++++P+s+l+G+nv +++  + ++Wy+Gptlle +++    +++ e++ r+ v  v  + +      G +  G v+vGd++vvlp g   +v+++  ++         + l+  +aG++v l ++d   + +s G++l    ++p+ +++++a+++ ++d   +++ G+++  ++ +  v++ +++++  +  +   k++  ++l+    ++v+l++++ i++++++e r +G f+l  r  ++t++ G+i
  MMETSP1061-20121228|5285_1 188 SMVILGHVDAGKSTLMGQILVQTNQISK-------RDAAK----Q--ENLSWLLDENESERARGVTMEIGTKTLRVPKHDIVVLDAPGHHDFIPVMITGAANADVAILVIAAVTGEFEagftgggQTKEHIMLARGLGVTQIIVAVNKLDVEGWKQDRYESIQSQVKDFllQQEFKPKRMQFVPISGLAGENVKTRTspQLSQWYKGPTLLEAVNNFFPANRQVEKPPRFIVTDVFAEGKGIV-TRGRVIQGFVEVGDSLVVLPVGDIVKVSKLEHLQppsdgaddpRRLAVGMAGDTVQLLVTDTdiMRLSIGNILCFPSARPPLTRKANARIIVMEDLavPIIRGAQVIFHMHSLDVPTVLTKLHAILKRDGSVKKErPRALTKGVSARVELTVSDRIVMEPFSECRSLGRFVL--RRGGETIAIGVI 601
                 57788******************99963.......33333....2..25899************************************************************99976555555669*************************************999987224556889***************977623578*********************************99988764.5799***********************999876422111111123455679****98776532245677*************************96226899************************999765555055666666689***********************98..788899988876 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.5   0.8   6.5e-42   1.7e-39       9     391 ..     183     603 ..     177     605 .] 0.76

  Alignments for each domain:
  == domain 1    score: 133.5 bits;  conditional E-value: 6.5e-42
   TIGR00485   9 skphvnvgtighvdhgkttltaaittvlakegkaaakkyde....idkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpm.......pqtrehillarqvgvpklvvflnkvdlvd.deellelvelevrellseydfpgddvpivrgsalkale.......gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemfk.........klldeakagdnvgvllrgvkkeeiergqvlakpgsikphk.kfeaevyvlkkeeggrhtpffsgyrpqfylrttdvtgkielpeg............vemvlpgdnvkltvelispvale......eglrfaireggrtvgagvvsk 391
                 +k+ + +  +ghvd gk+tl   i    ++ +k +a k ++    +d+   e+arg+t++  +      k     +d pgh d++  mitgaa+ d ailv++a  g +        qt+ehi+lar +gv +++v +nk d+   +++  e ++ +v+++l +++f+ + +  v  s l   +       + ++w  k   l+eav+++ p  +r+v+kp  + + dvf+ +g+g v+ grv +g v vg+ + ++ + ++ k  v+ +e ++         + l  ++agd v +l+  ++   +  g +l+ p++  p + k +a + v++        p+++g +  f++ + dv  ++++ ++             + +  g   ++++++   + +e      +  rf +r gg t+  gv+ +
  MMETSP1061-20121228|5285_1 183 QKSQLSMVILGHVDAGKSTLMGQILVQTNQISKRDAAKQENlswlLDENESERARGVTMEIGTKTLRVPKHDIVVLDAPGHHDFIPVMITGAANADVAILVIAAVTGEFeagftggGQTKEHIMLARGLGVTQIIVAVNKLDVEGwKQDRYESIQSQVKDFLLQQEFKPKRMQFVPISGLAGENvktrtspQLSQW-YKGPTLLEAVNNFFPA-NRQVEKPPRFIVTDVFA-EGKGIVTRGRVIQGFVEVGDSLVVLPVGDIVK--VSKLEHLQppsdgaddpRRLAVGMAGDTVQLLVTDTDIMRLSIGNILCFPSARPPLTrKANARIIVMED----LAVPIIRGAQVIFHMHSLDVPTVLTKLHAilkrdgsvkkerPRALTKGVSARVELTVSDRIVMEpfsecrSLGRFVLRRGGETIAIGVIDE 603
                 688889999************999665555555444444442223699999*****************************************************9987633333336*************************986367899******************998887666665544334433222233.35568*********96.79**************7.8********************98887776655..3334443322222222257899****************************9998876245566666543....468999***********9999888887777777788555443334444433333333334444411111145699*********9999976 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  109.6   0.2   1.5e-34   3.7e-32       3     254 ..     189     487 ..     187     536 .. 0.78

  Alignments for each domain:
  == domain 1    score: 109.6 bits;  conditional E-value: 1.5e-34
   TIGR00475   3 iataGHvDHGKttLlkal.tgid................adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvka.......qtkEHLavlkllgikelivvltKaDrv..deeevkevEeelkeileeeefl.knakivkvsAktGqGie.....eLkkelk..nLlesldak.....dkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepinkkvrvkalqaqnqsveka.........vAGqRialnladvdkeklkRG 254
                 +++ GHvD GK tL+ ++  +++                 d+   E+ RG+t+++G   l ++++ + ++D+PGH  f+  +++g + +d a+Lv++a  G          qtkEH+++++ lg+ ++iv+++K+D     +++ + + +++k++l ++ef  k +++v +s   G+ ++     +L +  k   Lle +++      +++kp r+ +  +F   G G+v +G + +G v+vgD+lv+ p++ +v+v +l+  + +++ a         +AG+ + l ++d d  +l  G
  MMETSP1061-20121228|5285_1 189 MVILGHVDAGKSTLMGQIlVQTNqiskrdaakqenlswlLDENESERARGVTMEIGTKTLRVPKHDIVVLDAPGHHDFIPVMITGAANADVAILVIAAVTGEFEagftgggQTKEHIMLARGLGVTQIIVAVNKLDVEgwKQDRYESIQSQVKDFLLQQEFKpKRMQFVPISGLAGENVKtrtspQLSQWYKgpTLLEAVNNFfpanrQVEKPPRFIVTDVFA-EGKGIVTRGRVIQGFVEVGDSLVVLPVGDIVKVSKLEHLQPPSDGAddprrlavgMAGDTVQLLVTDTDIMRLSIG 487
                 6789**********976525555667999888887777666777789***************************************************8876422333344*************************7523688999********98887776489************99832222344444433599999863333236789**********7.9***********************************9988877766111111111555555555555555555555 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.7   2.2e-20   5.6e-18       3     253 ..     184     439 ..     182     451 .. 0.65

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 2.2e-20
   TIGR03680   3 qpevniglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaanee......vPqpqtkehlvaleiigiknivivqnkidlvskekalenye....eikefvkgtv..aenapiiPvsalkkvnidvlle.alekeiptperdldkdalllvarsfdvnkPG....te.ieklkGGviGGslvqGklkvgdeieirPGi 253
                 ++++++ ++GhvD Gk+tl+ ++      + ++  kr  + +       + + +e e+ + +t+e   ++  +    +  + ++DaPGh  ++ +m++Gaa  d a+Lviaa             qtkeh++    +g+ +i+++ nk+d+   ++  ++ye    ++k+f+ ++   ++  + +P+s l   n++   + +l++  + p   +  +  +   r   v kP     t+ + + kG v  G ++qG ++vgd + + P  
  MMETSP1061-20121228|5285_1 184 KSQLSMVILGHVDAGKSTLMGQIL----VQTNQISKRDAAKQ-ENLSW-LLDENESERARGVTMEI-GTK--TLRVPKHDIVVLDAPGHHDFIPVMITGAANADVAILVIAAVTGefeagfTGGGQTKEHIMLARGLGVTQIIVAVNKLDVEGWKQ--DRYEsiqsQVKDFLLQQEfkPKRMQFVPISGLAGENVKTRTSpQLSQWYKGPTLLEAVNNFFPANRQ--VEKPPrfivTDvFAEGKGIVTRGRVIQGFVEVGDSLVVLPVG 439
                 678889999********9876654....33333334433322.22222.22333333344444444.222..2234667899******************************7641121223457*************************975443..4455000156666533223477889***********9875542566666666666666666666663..55553111111124457888999***********99998854 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   9.2e-21   2.4e-18       5     250 ..     190     450 ..     187     500 .. 0.81

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 9.2e-21
   TIGR01394   5 aiiahvDhGkttlvDklLkqsgvlrekeeveer....vmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplp.......qtrfvlkkalelgl.kpivvinkiDrp...darpeevvdevfdLfvelgaddeqldfpvvyasakeGvasleeedesedle..plfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskl 250
                  i+ hvD Gk tl+ ++L q+++++++++ ++     ++D n+ er rG+t+   + +++  +  i ++D+PGh Df   +       d ++l++ a+ G +        qt+  +  a  lg  ++iv +nk+D +   + r e+++++v d++++ + + ++++f  + + a e v + ++++ s+  +   l++a+ +  pa + + ++p ++ vt + + e  G ++ grv +G v  g+++ +l   + ++ +++++l
  MMETSP1061-20121228|5285_1 190 VILGHVDAGKSTLMGQILVQTNQISKRDAAKQEnlswLLDENESERARGVTMEIGTKTLRVPKHDIVVLDAPGHHDFIPVMITGAANADVAILVIAAVTGEFEagftgggQTKEHIMLARGLGVtQIIVAVNKLDVEgwkQDRYESIQSQVKDFLLQQEFKPKRMQFVPISGLAGENVKTRTSPQLSQWYKgpTLLEAVNNFFPANR-QVEKPPRFIVTDVFA-EGKGIVTRGRVIQGFVEVGDSLVVLPVGDIVKVSKLEHL 450
                 6899******************99887765543223379**************9999*****************************************99874333344499866655555554167888*****75222788999*********************9998888777777776665554442268888877777765.588899999999865.568******************999887777777776655 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   2.1     2e-18   5.2e-16      90     296 ..     189     435 ..     178     445 .. 0.70

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 2e-18
   TIGR00487  90 vtimGhvDhGktsLLdsi.......rktkvaege.............aGGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkp.......qtieaiehakaanv.PiivainkiDkpeanpDr...vkqelseyglvpeewGGetifvpvsalkgkgideLlda.........iLlqseveelkanknkqakg.vvieakldkgrGpvatvlvqeGtLkvGDivvv 296
                 + i+GhvD Gk +L+ +i        k + a++e             a G+t +iG  ++++ +++ i+ lD+PGh  f  +   Ga  +D+++lv+aa  G  +       qt+e i  a+  +v  iiva+nk+D +  + Dr   ++ +++++ l  e     ++fvp+s l+g++++               Ll +    + an++ +     ++      g+G+v+   v +G ++vGD++vv
  MMETSP1061-20121228|5285_1 189 MVILGHVDAGKSTLMGQIlvqtnqiSKRDAAKQEnlswlldeneserARGVTMEIGTKTLRVPKHD-IVVLDAPGHHDFIPVMITGAANADVAILVIAAVTGEFEagftgggQTKEHIMLARGLGVtQIIVAVNKLDVEGWKQDRyesIQSQVKDFLLQQEFKPKRMQFVPISGLAGENVKTRTSPqlsqwykgpTLLEAVNNFFPANRQVEKPPrFIVTDVFAEGKGIVTRGRVIQGFVEVGDSLVV 435
                 5699*********997653322111444444433222222223333468************99996.9*******************************9886433334455**********9987369**********9999985557788888887777777889************986544300001111134444334445665544433134444557788888888888888888888876 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.1   2.5e-18   6.4e-16       6     255 ..     189     469 ..     184     492 .. 0.75

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 2.5e-18
   TIGR01393   6 fsiiahidhGkstladrllektkavserelkeq.....lldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqG.vea......qtlanvylalekdl.eiiPvinkidlPsadv...ervkkeieeviGld.....aeeailvsaktGigiee..............lleaivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpkl...vkeeelkaGevG 255
                 + i+ h+d Gkstl  ++l +t+ +s+r+  +q     lld+ + er rG+t+   + +l+  ++      + ++d+PGh df   +    a ++ a+l++ a+ G  ea      qt  ++ la    + +ii  +nk+d+   +    e++++++++++  +     +++ + +s+ +G++++               llea+ +  pa + + e+p + ++ d v+ + +G+v+  rv++G +++gd + +l  g   +v+++  l+p +    + ++l +G+ G
  MMETSP1061-20121228|5285_1 189 MVILGHVDAGKSTLMGQILVQTNQISKRDAAKQenlswLLDENESERARGVTMEIGTKTLRVPKH-----DIVVLDAPGHHDFIPVMITGAANADVAILVIAAVTGeFEAgftgggQTKEHIMLARGLGVtQIIVAVNKLDVEGWKQdryESIQSQVKDFLLQQefkpkRMQFVPISGLAGENVKTrtspqlsqwykgptLLEAVNNFFPA-NRQVEKPPRFIVTD-VFAEGKGIVTRGRVIQGFVEVGDSLVVLPVGDIVKVSKLEHLQPPSdgaDDPRRLAVGMAG 469
                 6799*************************99885555569*************999999888644.....5999**********9999999************9885455333333666666666655543688899****98765511166889***99865412121567899********9743333333333333256665555544.55667777877777.68899****************************9999999888765222333456666555 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.2   5.8e-14   1.5e-11      13     145 ..     189     331 ..     181     357 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 5.8e-14
   TIGR00484  13 iGisahidaGktttterilfytgkihkigevhdGa..atmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvep.......qsetvwrqakkyevPri.vfvnkmdkiGanfl 145
                 + i  h+daGk+t+  +il  t++i k +  ++ +    +d  e e+ rG+t+   + t    ++ i ++d+PGh df   +       d a++v+ av+G          q++     a+  +v +i v vnk+d  G +  
  MMETSP1061-20121228|5285_1 189 MVILGHVDAGKSTLMGQILVQTNQISKRDAAKQENlsWLLDENESERARGVTMEIGTKTLRVPKHDIVVLDAPGHHDFIPVMITGAANADVAILVIAAVTGEFEagftgggQTKEHIMLARGLGVTQIiVAVNKLDVEGWKQD 331
                 56899**********************9999855533579**************************************98778888999**********99655011111134444444555667765156888888876543 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.3   4.6e-13   1.2e-10       7     145 ..     189     336 ..     185     359 .. 0.74

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 4.6e-13
   TIGR00491   7 vavlGhvdhGkttlldki..rktrvakreaGgitqhiGaseiPidvikrlcgdllkklkidlkiP..GllvidtPGheaftslrkrGGaladiailvvdine.....Gfk..pqtveavnilrqlk.tPfvvaankidripGwkskegkfi 145
                 +++lGhvd Gk+tl+ +i  +  ++ kr+a +  q+  +  +  +  +r  g  +      l++P   ++v+d+PGh+ f  +   G a ad+ailv+  +      Gf    qt+e + + r l  t  +va nk+d ++Gwk    ++i
  MMETSP1061-20121228|5285_1 189 MVILGHVDAGKSTLMGQIlvQTNQISKRDAAK--QENLSWLLDENESERARGVTMEIGTKTLRVPkhDIVVLDAPGHHDFIPVMITGAANADVAILVIAAVTgefeaGFTggGQTKEHIMLARGLGvTQIIVAVNKLD-VEGWKQDRYESI 336
                 579*************9843566788888875..554455555555555555555444556666633689***************************9765411112675336**********98626799******9.79**98766655 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.1   5.7e-12   1.5e-09       5     156 ..     188     368 ..     184     372 .. 0.70

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 5.7e-12
   TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskp......gvtrdyvteqieedGkt............ykvnllDTaGqedfdairrlyvreverslevvdivilvldveegle..kqtkeiiheakkkgv.piilvvnKiDlkd.......dlktkvkslfaklnaep....iielsaetgknid 156
                   vi+Ghvd+GKstL+ ++l ++  i+++++           ++ e+++ +G+t              + +lD +G+ df ++     +++++ + v+  v    ++e g +   qtke i  a+  gv  ii++vnK D ++       +++++vk+++ + +++p    ++++s  +g+n+ 
  MMETSP1061-20121228|5285_1 188 SMVILGHVDAGKSTLMGQILVQTNQISKRDAakqenlS-WLLDENESERARGVTmeigtktlrvpkHDIVVLDAPGHHDFIPVMITGAANADVAILVIAAVTG--EFEAGFTggGQTKEHIMLARGLGVtQIIVAVNKLDVEGwkqdryeSIQSQVKDFLLQQEFKPkrmqFVPISGLAGENVK 368
                 579***************99888888888774445431.22245566777777788888888888899************44444444444444444444443..3444433225777777777755552799**********9999**98888888888888887633335677777777765 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   5.9e-12   1.5e-09      11     144 ..     186     325 ..     177     336 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 5.9e-12
   TIGR00503  11 rrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGis..ittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGvee.......rtrkllevtr.lrdlpiltflnkldr 144
                 + ++ i+ h daGk+tl  ++l+  n i +  a k  + + s   d  e e+ rG++  i t  l+ + +d +v  ld+pGh+df        + +d a++vi a  G  e       +t+  + ++r l  + i+  +nkld 
  MMETSP1061-20121228|5285_1 186 QLSMVILGHVDAGKSTLMGQILVQTNQISKRDAAK--QENLSWLLDENESERARGVTmeIGTKTLRVPKHDIVV--LDAPGHHDFIPVMITGAANADVAILVIAAVTGEFEagftgggQTKEHIMLARgLGVTQIIVAVNKLDV 325
                 557889*******************9999988865..56778889999*******863378999******9875..9*************99************9988432133333366665555554788888888999885 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.2     2e-10   5.1e-08      20     123 ..     187     290 ..     168     343 .. 0.83
   2 ?   -3.5   0.1       1.7   4.3e+02     289     324 ..     401     435 ..     394     446 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2e-10
   TIGR00490  20 rnigivahidhgkttlsdnllagagmiseelageqlf....ldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegv 123
                   + i+ h+d gk+tl  ++l  +  is+  a +q      ld +e e++rg+t++    +        ++ i ++d+pgh df   +       d ai+v++av g 
  MMETSP1061-20121228|5285_1 187 LSMVILGHVDAGKSTLMGQILVQTNQISKRDAAKQENlswlLDENESERARGVTMEIGTKT----LRVPKHDIVVLDAPGHHDFIPVMITGAANADVAILVIAAVTGE 290
                 4677999*************************9997511125667788899***9987654....4556677999*********98877777778**********985 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.7
   TIGR00490 289 plavvitkivvdkhagevavgrlysgaikkgsevyl 324
                 p   ++t++  +   g v+ gr+  g ++ g+ + +
  MMETSP1061-20121228|5285_1 401 PPRFIVTDVFAEG-KGIVTRGRVIQGFVEVGDSLVV 435
                 5567889988775.59999*********99998766 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   0.00033     0.084     171     202 ..     182     213 ..     156     220 .. 0.79
   2 !    7.8   0.0    0.0012      0.32     287     337 ..     314     369 ..     271     380 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00033
   TIGR03594 171 eeeepikiaiiGrpNvGKStLvNallgeervi 202
                 ++++++ + i+G   +GKStL+ ++l ++  i
  MMETSP1061-20121228|5285_1 182 DQKSQLSMVILGHVDAGKSTLMGQILVQTNQI 213
                 2355799******************9888776 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0012
   TIGR03594 287 kalvivvNKwDlv.kdekeleelkkeleeklkfl....kfapivfiSAltgkgvek 337
                   ++++vNK D+   +++++e++++++++ l +     k +++v iS+l g++v++
  MMETSP1061-20121228|5285_1 314 TQIIVAVNKLDVEgWKQDRYESIQSQVKDFLLQQefkpKRMQFVPISGLAGENVKT 369
                 45899*******9999999999999999766554111256788999*999999975 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.2   0.00023      0.06       4      29 ..     190     215 ..     187     413 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00023
   TIGR00436   4 ailGrpnvGKSTLlNkllgqkisivS 29 
                  ilG+ ++GKSTL+ ++l q + i  
  MMETSP1061-20121228|5285_1 190 VILGHVDAGKSTLMGQILVQTNQISK 215
                 69****************99998754 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   0.0    0.0022      0.58     143     183 ..     174     214 ..     165     221 .. 0.83
   2 ?    1.8   0.0     0.093        24      85     134 ..     307     357 ..     303     369 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0022
   TIGR03597 143 kellelikkarekkdvyvvGvtNVGKSsliNkllklnkgkk 183
                 k + +++k+++++  ++++G    GKS+l+ ++l ++++ +
  MMETSP1061-20121228|5285_1 174 KAVPSFVKDQKSQLSMVILGHVDAGKSTLMGQILVQTNQIS 214
                 5566778888999999*****************98887654 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.093
   TIGR03597  85 lkrfvkenkvllvvNKidllp.ksvklekikewlkkeakeeglkpvdillv 134
                 l+r ++  ++++ vNK+d+   k+ + e+i++ +k+ + ++ +kp+ + +v
  MMETSP1061-20121228|5285_1 307 LARGLGVTQIIVAVNKLDVEGwKQDRYESIQSQVKDFLLQQEFKPKRMQFV 357
                 667778899**********8647788999*********9999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.56u 0.15s 00:00:00.71 Elapsed: 00:00:00.56
# Mc/sec: 1400.94
//
Query:       MMETSP1061-20121228|5293_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 1928.19
//
Query:       MMETSP1061-20121228|5296_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.32
# Mc/sec: 1072.41
//
Query:       MMETSP1061-20121228|5297_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1011.92
//
Query:       MMETSP1061-20121228|5299_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 2675.78
//
Query:       MMETSP1061-20121228|5302_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 586.62
//
Query:       MMETSP1061-20121228|5300_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 999.35
//
Query:       MMETSP1061-20121228|5303_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1558.49
//
Query:       MMETSP1061-20121228|5301_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 2283.41
//
Query:       MMETSP1061-20121228|5304_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 857.93
//
Query:       MMETSP1061-20121228|5305_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    4.5  18.0        1.3    4.3  12.5    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3  12.5   0.00032       1.3     936     998 ..      29      93 ..       7     111 .. 0.50

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.00032
   TIGR00927 936 addeevkdetgeqelnaenq..geakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeee 998
                 +++++  +   ++ ++a ++  + a +d + v   ++ d G+ +++eee+e+ +++++eee+e++
  MMETSP1061-20121228|5305_1  29 EAETNWAEAAASASASAAERpvASALDDVNDVPTRDDDDDGNDDDDEEEDEDGNDDDDEEEDEDD 93 
                 22222222233333333322113445666666666555555555555555543333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 603.38
//
Query:       MMETSP1061-20121228|5308_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1499.88
//
Query:       MMETSP1061-20121228|5306_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1789.19
//
Query:       MMETSP1061-20121228|5311_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 465.10
//
Query:       MMETSP1061-20121228|5310_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2940.17
//
Query:       MMETSP1061-20121228|5307_1  [L=1264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-59  198.4   0.0    8.4e-59  197.6   0.0    1.4  1  TIGR00585 mutl: DNA mismatch repair protein MutL
    0.00024   17.4   0.0    0.00038   16.8   0.0    1.2  1  TIGR01052 top6b: DNA topoisomerase VI, B subunit
  ------ inclusion threshold ------
      0.058    9.7   0.0      0.086    9.2   0.0    1.1  1  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase


Domain annotation for each model (and alignments):
>> TIGR00585  mutl: DNA mismatch repair protein MutL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.6   0.0   6.1e-62   8.4e-59       2     312 ..      25     401 ..      24     402 .. 0.90

  Alignments for each domain:
  == domain 1    score: 197.6 bits;  conditional E-value: 6.1e-62
   TIGR00585   2 tikqLpeevvnkiaaGeviespasvvkELveNsLDAgAtkieveveegglklievsDnGsGiskedlellveryaTSKissfedleaie..TlGFRGEALasissvskleittktsaedglalkvk..aegk.leeeikpaskkkGTtVtvrdLFynlpvRrkeflkspkkelekilklleryalvhpevsfsllse......gkkslslstkrkaslkeakvrsvlgtkvasklipldeleesdlqle.......................................gfisepsvtrserkke.....lflfiNgrpveakellkaidevykealekak.................apvvvlnleidpekvDvnvhpeKkeV 312
                 +i++L+ ++v++i+a + i ++as+vkEL++N+LDA++t+i++++  +gl+ ievsD+G+Gi    l  ++ r+aTSKi+  +d+   +  T GFRGEAL+s  +vs+  ++ +++a+d la+k+   ++g+ +  + ++ ++k+GTtV v + F+ lp+Rr  + ++ ++e +k+ kl+e+y + +  vsf l+++       +++  + + +++s++e  ++s+lg   +++   l+   es +++                                        + +   s ++     +      +  iNgr ve + ++ ++++ + +a++ +                   p + l++++++++ D+n++p+K+ V
  MMETSP1061-20121228|5307_1  25 EIQRLDIDTVRRITAEQAISDLASIVKELMDNALDAESTTIKIRLFGQGLDIIEVSDDGNGIPVGSLSYAATRHATSKIERIDDIYTGTglTMGFRGEALFSTVCVSESLVVASRTANDALATKLVfgNDGSpIAGQSETLARKVGTTVAVLKPFARLPARRADLVRRIQTERTKLFKLVEAYGIFNVGVSFHLMDIggrhnhREEVGLVTSSNSKSIQE-TASSLLGPVFVKGTTSLEVSLESYFRTAtnhpanmnnknnkyddevcyhwgirgliskeplllaasqQSLRGSSSSK-----SrirsaHYYSINGRVVELPRVTALLKKLWTNACTTQCsagntnnnasanirppkKPSALLEFTLPNNAFDINLSPDKQTV 401
                 79***********************************************************************************98765599***************9999988899999999988559999****************************************************************99988666666667767778888.5**********999999977777777778999999999999999999999999888888887555532222223333.....245556999**********************9976669999*************************************99 PP

>> TIGR01052  top6b: DNA topoisomerase VI, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.8e-07   0.00038      26     138 ..      43     149 ..      38     169 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.8e-07
   TIGR01052  26 irslttvikelvtnsldaceeaGilPdikveieklgkdhykvavednGpGiPeeyipkvfgkllagsklhriiqsrGqqG..iGisgavlfsqlttGkPvkvisstkgeikakev 138
                 i  l  ++kel++n+lda          +++i+  g+   ++ v d+G GiP+ +++ + ++  a+sk++ri       G  +G  g  lfs +   + + v s t ++  a+++
  MMETSP1061-20121228|5307_1  43 ISDLASIVKELMDNALDAEST-------TIKIRLFGQGLDIIEVSDDGNGIPVGSLSYAATR-HATSKIERIDDIYTGTGltMGFRGEALFSTVCVSESLVVASRTANDALATKL 149
                 667999***********9653.......45666677777899**************998665.7999*99997766655522699*********************988776655 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   6.3e-05     0.086     563     624 ..      29      87 ..      16      91 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 6.3e-05
   TIGR02916 563 ievsvdkdlevradrerlervlghLvqNAleATeeeGkVkirverekeaavieieDsGqGms 624
                  +++  + ++++   + l +++ +L+ NAl+A   + ++kir+   ++   ie++D G+G++
  MMETSP1061-20121228|5307_1  29 LDIDTVRRITAEQAISDLASIVKELMDNALDAE--STTIKIRLF-GQGLDIIEVSDDGNGIP 87 
                 34444455666666689**************95..567999999.557889*********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.12s 00:00:00.67 Elapsed: 00:00:00.47
# Mc/sec: 3549.66
//
Query:       MMETSP1061-20121228|5315_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 625.21
//
Query:       MMETSP1061-20121228|5317_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1345.03
//
Query:       MMETSP1061-20121228|5320_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|5321_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.82    6.8   5.0        3.9    4.6   1.5    2.2  2  TIGR00162 TIGR00162: TIGR00162 family protein


Domain annotation for each model (and alignments):
>> TIGR00162  TIGR00162: TIGR00162 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   1.5   0.00094       3.9     157     204 ..       9      60 ..       7      66 .. 0.85
   2 ?    2.5   0.0     0.004        16     177     202 ..      83     108 ..      76     124 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00094
   TIGR00162 157 gvlfrsdgGGiiGasGlllglael..eGipgvc..lmGetpGylidpkaaka 204
                 +v++ ++gG i  + G+ lg++ +   G+   c  + G t+G ++d+  +k 
  MMETSP1061-20121228|5321_1   9 NVVMITAGGAIDSTIGVSLGISTMaaAGLGQCCsdVAGITSGGIVDATVSKL 60 
                 689999*****9*********9983358988886679**********98886 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.004
   TIGR00162 177 laeleGipgvclmGetpGylidpkaa 202
                 ++   G+ + cl+G t  +l+d++ a
  MMETSP1061-20121228|5321_1  83 FGACVGVVTGCLLGMTVLFLMDTEKA 108
                 5666789999************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1506.88
//
Query:       MMETSP1061-20121228|5322_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-32  109.9  21.6    5.6e-30  102.5  11.4    2.0  2  TIGR02977 phageshock_pspA: phage shock protein A


Domain annotation for each model (and alignments):
>> TIGR02977  phageshock_pspA: phage shock protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5  11.4   1.4e-33   5.6e-30       3     203 ..      20     220 ..      18     229 .. 0.96
   2 !   11.1   0.1   1.2e-05     0.051     190     217 ..     229     256 ..     218     258 .. 0.84

  Alignments for each domain:
  == domain 1    score: 102.5 bits;  conditional E-value: 1.4e-33
   TIGR02977   3 iFsRlaDivnsnlnalldkaedPeKliRliiqEmEdtlvevrsasartlAekkeleRkverlekqeeeWqekAelAlskgreDLAraALiekkkaaekvealekelaaveealekleediekLeekleeararqkalvlRekaAesrlkvreqldsekveealarfeqlerrvdeleaeaeaydlgkkksledefaeLeae 203
                 +F R+  +  +  n++l++ edPeK++   +++m + l+ vr +   + A +++l+ +  +le+q+ +W ++A+lAl++  e LAr+AL+ +++  +++ +++++++a  ++++kl e +  Le+k++ea ++++ +++R+kaA+s   + + l+    +  ++ fe++e +v  lea ae  +   ++s+ + +a L ++
  MMETSP1061-20121228|5322_1  20 LFDRFFRVSRAGANNFLQRLEDPEKIMTQALEDMQNDLLRVRQTYSEVTATQRRLASSRAQLESQAGDWYDRAQLALRRSNEGLAREALARREALLNQARNIQDQIDAQANNIDKLYEGMVLLEQKIKEASSKKNQMAARAKAAKSTQAINDMLSGLTGQTSMDAFERMEDKVLALEAAAEVSAEMAQTSMYKALAPLSSK 220
                 799999999****************************************************************************************************************************************************************************98877777999999988776 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 1.2e-05
   TIGR02977 190 kksledefaeLeaedeiekelaalkekl 217
                 ++++e +f+ Lea+d++++el++lk+++
  MMETSP1061-20121228|5322_1 229 ASDIETQFRLLEASDSVDRELEKLKANI 256
                 35899********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       324  (0.0789859); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1265.27
//
Query:       MMETSP1061-20121228|5324_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 478.46
//
Query:       MMETSP1061-20121228|5325_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.7   0.7      0.015   12.5   0.5    1.2  1  TIGR02268 TIGR02268: Myxococcus xanthus paralogous family TIGR02268


Domain annotation for each model (and alignments):
>> TIGR02268  TIGR02268: Myxococcus xanthus paralogous family TIGR02268
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.5   3.6e-06     0.015     130     199 ..      31      95 ..       9     110 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.6e-06
   TIGR02268 130 artaasyqqevkelRaelqeleeelarlrreq.aepeglagllvsgvidketgvaakllkvrkasenelvv 199
                 +++a  ++q++k++R++ q++e     lr ++ ++p+      +++++   tg+a ++ +   + ++++ +
  MMETSP1061-20121228|5325_1  31 EAAASFFPQQMKRTRRRFQQIESAATILRHAKiSNPS----YTMAEAMK-VTGIAERWCE-NTVLQQKVIA 95 
                 5778889****************88888865526788....55678888.6999999998.5555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 989.92
//
Query:       MMETSP1061-20121228|5328_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 645.28
//
Query:       MMETSP1061-20121228|5327_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-20   71.2   0.0    2.2e-20   70.5   0.0    1.4  1  TIGR02180 GRX_euk: glutaredoxin
    3.6e-17   60.2   0.0    6.3e-17   59.5   0.0    1.4  1  TIGR02181 GRX_bact: glutaredoxin 3
    4.4e-14   50.0   0.0    9.2e-14   49.0   0.0    1.4  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    9.3e-12   42.7   0.0    1.4e-11   42.1   0.0    1.2  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
      1e-09   36.6   0.0    3.1e-09   35.0   0.0    1.8  2  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    2.4e-05   22.2   0.5    0.00019   19.4   0.0    2.4  2  TIGR02183 GRXA: glutaredoxin, GrxA family
    0.00012   20.3   0.0     0.0002   19.6   0.0    1.4  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
    0.00019   19.3   0.0    0.00035   18.5   0.0    1.5  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
     0.0035   15.4   0.0     0.0059   14.7   0.0    1.4  1  TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH
  ------ inclusion threshold ------
      0.032   12.2   0.0       0.06   11.3   0.0    1.4  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
      0.035   12.2   0.0      0.065   11.4   0.0    1.5  1  TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   0.0   5.8e-23   2.2e-20       1      82 [.     157     241 ..     157     243 .. 0.90

  Alignments for each domain:
  == domain 1    score: 70.5 bits;  conditional E-value: 5.8e-23
   TIGR02180   1 VvvfsKsyCpYckkakelLkklkvkkalevveldkl..engselqdyLkeltgqrtVPrifingkfiGGsdd...lkklekkgklee 82 
                 V vfs  +Cp+c+kak+lL+++ +   + +veld+l  ++g+el++ L + tg+++VP+ifi+g++iGG++d   l  le++g+l+ 
  MMETSP1061-20121228|5327_1 157 VAVFSFATCPFCRKAKDLLDEKGIP--YGLVELDELegNEGNELRATLGRKTGRTSVPSIFIGGTCIGGCNDgpgLLPLEESGELDR 241
                 89******************99999..9******9965688******************************9555677788888765 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   1.7e-19   6.3e-17       1      80 []     157     243 ..     157     243 .. 0.84

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 1.7e-19
   TIGR02181   1 vviYtkksCpycsrAkalLeekgvefeeievdkdk.....eareemierskgrrtvPQifigdvhvGGcdd...LlaleregkLdkLL 80 
                 v +++ ++Cp+c++Ak lL+ekg+ +  +e+d+ +     e+r+ +  ++ gr++vP ifig + +GGc+d   Ll le++g+Ld+LL
  MMETSP1061-20121228|5327_1 157 VAVFSFATCPFCRKAKDLLDEKGIPYGLVELDELEgnegnELRATLGRKT-GRTSVPSIFIGGTCIGGCNDgpgLLPLEESGELDRLL 243
                 678999*****************988877777654333425555566666.8******************9999************98 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   2.5e-16   9.2e-14       9      72 ..     156     225 ..     150     227 .. 0.86

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 2.5e-16
   TIGR02190   9 svsvftkpGCPfCakakavLkekGldfeeivLgk..dirtrslrav....tGattvPqvfinGkliGgsd 72 
                  v+vf+   CPfC kak++L ekG+ +  + L++  + ++  lra     tG+t+vP +fi+G  iGg +
  MMETSP1061-20121228|5327_1 156 PVAVFSFATCPFCRKAKDLLDEKGIPYGLVELDEleGNEGNELRATlgrkTGRTSVPSIFIGGTCIGGCN 225
                 699*************************999996336778888886444488999************986 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   0.0   3.7e-14   1.4e-11       3      87 ..     150     239 ..     148     246 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 3.7e-14
   TIGR02189   3 rlvsekavvifskssCClshvvkrLllelGvnPavveldkea..eakeiekallelgskeavPvvfvGGklvGglee...vmalhlsgsL 87 
                 + v  ++v +fs  +C ++  +k Ll e G+   +veld+ +  e++e+ + l + +++++vP +f+GG+++Gg ++   ++ l  sg+L
  MMETSP1061-20121228|5327_1 150 DFVDSHPVAVFSFATCPFCRKAKDLLDEKGIPYGLVELDELEgnEGNELRATLGRKTGRTSVPSIFIGGTCIGGCNDgpgLLPLEESGEL 239
                 567889*********************************8642267788888888889****************9963335555555555 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       4.7   1.8e+03      33      52 ..      81     100 ..      78     102 .. 0.82
   2 !   35.0   0.0   8.4e-12   3.1e-09       2      63 ..     157     223 ..     156     226 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 4.7
   TIGR02196  33 ekdsaaaeellkklgqrsvP 52 
                 e+d  ++  ++ + g+ + P
  MMETSP1061-20121228|5327_1  81 ETDRVEKSSVVDDKGRTGEP 100
                 78889999999999999887 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 8.4e-12
   TIGR02196   2 vkvYttpwCppCkkakeyLkskgiafeeidv.....ekdsaaaeellkklgqrsvPvivigekivvG 63 
                 v v++ ++Cp C+kak+ L +kgi++  ++      +++++ ++ l +k+g+ svP i ig++ + G
  MMETSP1061-20121228|5327_1 157 VAVFSFATCPFCRKAKDLLDEKGIPYGLVELdelegNEGNELRATLGRKTGRTSVPSIFIGGTCIGG 223
                 89************************766551111145667788999**************998866 PP

>> TIGR02183  GRXA: glutaredoxin, GrxA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.53     2e+02      19      51 ..     109     143 ..     103     158 .. 0.64
   2 !   19.4   0.0     5e-07   0.00019       2      73 ..     157     226 ..     156     231 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.53
   TIGR02183  19 laeklakela..dfefryvdihaeGiskadlektv 51 
                 la+k+++ +a   + +r+ ++ a+ ++ +d +k  
  MMETSP1061-20121228|5327_1 109 LANKFSTMVAsnTLGYRFKQFVADIVAGDDYDKDA 143
                 66666665541156789988888888888887753 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 5e-07
   TIGR02183   2 vvifGrpgcpycvrakqlaeklakeladfefryvdih.aeGiskadlektvGkpv..etvpqifvdekavGGctd 73 
                 v +f   +cp+c +ak+l ++     +   +  v++   eG   ++l  t+G+     +vp if+    +GGc d
  MMETSP1061-20121228|5327_1 157 VAVFSFATCPFCRKAKDLLDE-----KGIPYGLVELDeLEGNEGNELRATLGRKTgrTSVPSIFIGGTCIGGCND 226
                 678999***********9654.....45678888885269************8763257**************98 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.2e-07    0.0002       2      36 ..     157     191 ..     156     217 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 5.2e-07
   TIGR02200   2 vtvYatswCgyCaslkrtLdkdgaeYevvdiekde 36 
                 v v+    C++C+++k  Ld++g++Y  v++++ e
  MMETSP1061-20121228|5327_1 157 VAVFSFATCPFCRKAKDLLDEKGIPYGLVELDELE 191
                 67889999*********************999755 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   9.4e-07   0.00035       3      98 ..     146     244 ..     144     245 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 9.4e-07
   TIGR00365   3 ekikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnv..le...deeireelkeysnWPtiPqlyvkgelvGGcd...ivlelyesgelkkllk 98 
                 ++i++ v++++v ++     ++++C f  ka ++l++ g+ +  v++  le    +e+r++l + +    +P +++ g  +GGc+    +l l esgel++ll+
  MMETSP1061-20121228|5327_1 146 KTIDDFVDSHPVAVF-----SFATCPFCRKAKDLLDEKGIPYGLVELdeLEgneGNELRATLGRKTGRTSVPSIFIGGTCIGGCNdgpGLLPLEESGELDRLLN 244
                 667778888888887.....6899****************99887663354222579***************************83334778889999988876 PP

>> TIGR02194  GlrX_NrdH: glutaredoxin-like protein NrdH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.6e-05    0.0059       1      35 [.     157     191 ..     157     224 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.6e-05
   TIGR02194   1 itvysknnCvqCkatkkaleeqniafeeinideqp 35 
                 + v+s   C  C+ +k  l+e++i +  +++de +
  MMETSP1061-20121228|5327_1 157 VAVFSFATCPFCRKAKDLLDEKGIPYGLVELDELE 191
                 689****************************9854 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00016      0.06       4      29 ..     158     183 ..     156     224 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00016
   TIGR00411   4 elftsPtCPyCPkakkvveevakeeg 29 
                  +f   tCP+C kak   +e     g
  MMETSP1061-20121228|5327_1 158 AVFSFATCPFCRKAKDLLDEKGIPYG 183
                 68999************998655544 PP

>> TIGR01617  arsC_related: transcriptional regulator, Spx/MgsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00018     0.065       2      33 ..     158     189 ..     157     211 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00018
   TIGR01617   2 klygipncttckkarrwLeangieyeeidlke 33 
                  +++   c  c+ka+  L+++gi+y   +l e
  MMETSP1061-20121228|5327_1 158 AVFSFATCPFCRKAKDLLDEKGIPYGLVELDE 189
                 5889999******************9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1124.18
//
Query:       MMETSP1061-20121228|5333_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.53    5.6  18.2       0.56    5.6  12.6    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
          7    2.7  14.3        8.4    2.5   9.9    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6  12.6   0.00027      0.56     775     874 ..       3      87 ..       1     133 [. 0.52

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00027
   TIGR00927 775 esggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegde 874
                 e++++ e+e+++e+k+++e+e ei   +++e+++  +  +++++ + +e+e++    e t +e  ed++e++                ++++++++++de
  MMETSP1061-20121228|5333_1   3 ETENKDENENDKETKTKSETETEITQFGEEESNERKQQPSHDNDSDSDEDEDDSILAETTYPESIEDDDEGDN---------------DGGNTSDANTDE 87 
                 3444444555555555555555555544444444444444444444444444444445555555444444432...............222222222221 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   9.9    0.0041       8.4     323     443 ..       6     123 ..       1     150 [. 0.36

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0041
   TIGR02442 323 ekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrs...........dkrgryvkaernreeaddlavdAtlra 443
                 +k+++e+++e+k+++e             +++e ++ g+++++e++++ ++++++ s e+ + +  ++++ +++++  ++   ++ G+ s++++           d+r+++ ++ +++++ ++l++   l+a
  MMETSP1061-20121228|5333_1   6 NKDENENDKETKTKSE-------------TETEITQFGEEESNERKQQPSHDNDSDSDEDEDDSILAETTYPESIEDDDE-GDNDGGNTSDANTdeilrslqeteDQRNQILQPPTPSQSSSSLQLPLQLQA 123
                 1122222222222211.............222222222222222222222222222222222222222222222222222.333444444433300000000003555555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 899.48
//
Query:       MMETSP1061-20121228|5335_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|5336_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   19.6   1.0    0.00019   19.3   0.7    1.3  1  TIGR00568 alkb: alkylated DNA repair protein AlkB


Domain annotation for each model (and alignments):
>> TIGR00568  alkb: alkylated DNA repair protein AlkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.7   4.7e-08   0.00019      36      76 ..     108     148 .]      57     148 .] 0.78

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 4.7e-08
   TIGR00568  36 eektlsva.rtvlkkLrWvtlgeqYdytskeyetdkksPdfP 76 
                 +++t+s +      kL W t+g++Yd+t++ y+ +kks  +P
  MMETSP1061-20121228|5336_1 108 NNNTKSNNfYRRFAKLSWATMGYHYDWTERSYHPKKKST-MP 148
                 334444431345789*****************9888875.66 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 813.93
//
Query:       MMETSP1061-20121228|5332_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 2333.23
//
Query:       MMETSP1061-20121228|5337_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-18   63.7   1.9      5e-18   63.2   1.3    1.3  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.1e-16   59.1   0.0    2.8e-15   54.5   0.0    2.1  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.1e-15   55.6   0.0    1.1e-13   49.0   0.0    2.0  2  TIGR02415 23BDH: acetoin reductases
    3.5e-14   50.9   0.0    5.8e-14   50.2   0.0    1.5  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    5.6e-14   49.8   0.1      1e-13   48.9   0.0    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    5.7e-12   42.6   0.2    8.2e-11   38.8   0.2    1.9  2  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      3e-11   41.1   0.1    6.7e-08   30.1   0.1    2.1  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    9.5e-10   36.0   0.0    1.3e-09   35.5   0.0    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
      1e-06   26.3   0.0    2.6e-06   25.0   0.0    1.6  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    0.00088   16.5   0.4     0.0017   15.6   0.0    1.6  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase


Domain annotation for each model (and alignments):
>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   1.3   1.2e-20     5e-18       8     133 ..      24     146 ..      18     183 .. 0.88

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 1.2e-20
   TIGR03206   8 vtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagr 133
                 v g g gig+a+ r+++ eg  vav+  ++e  +   a+      +++  a+d+t+ +++d +va++e  lgp+dvlv nag  v k++   +   ++  +  n+ g l     +++gm+er ag 
  MMETSP1061-20121228|5337_1  24 VFGFGPGIGAAVARKWCTEGYSVAVMARSHEKLRAFEAD---FPNNSKGYACDVTKPEAIDQTVASIEADLGPIDVLVWNAGSGVWKTWDTIDLESFDLHMKTNVHGLLRATQRIAPGMIERAAGG 146
                 678899********************9888777766655...5668899*************************************************************************9985 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   6.9e-18   2.8e-15       3     128 ..      24     145 ..      22     147 .. 0.92
   2 ?    2.5   0.0     0.054        22     130     173 ..     175     218 ..     155     227 .. 0.83

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 6.9e-18
   TIGR01830   3 vtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsG 128
                 v G + giG+a+a+k  +eg++v+++ r ++ek++++++++ ++   ++++++dv++ e+++++v+++e++lg id+lv nAG    k    +  e +d  +k+n++g+ + t++++  mi++ +G
  MMETSP1061-20121228|5337_1  24 VFGFGPGIGAAVARKWCTEGYSVAVMAR-SHEKLRAFEADFPNN---SKGYACDVTKPEAIDQTVASIEADLGPIDVLVWNAGSGVWKTWDTIDLESFDLHMKTNVHGLLRATQRIAPGMIERAAG 145
                 567788********************66.667788888888775...89***********************************99999999*****************************98776 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.054
   TIGR01830 130 iinissvvgllGnagqanYaasKaGligltkslakElasrnitv 173
                 i+  ++ ++l G++  + +a  K+    l++sla++l+ r+++v
  MMETSP1061-20121228|5337_1 175 ILVTGATASLRGKPFTVGFAPQKGAQRLLAQSLARDLGPRGVHV 218
                 555566677788888888888999899999**********9998 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   2.8e-16   1.1e-13       5     153 ..      24     170 ..      21     175 .. 0.90
   2 !    4.8   0.0    0.0086       3.5     135     177 ..     178     220 ..     171     239 .. 0.88

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 2.8e-16
   TIGR02415   5 vtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhk.Gkiinaasiagvegspelsaysst 153
                 v G + GiG a+a++   +G++vav+   +e++++ + ++    ++++ +  dv++ ++++++v +  ++lG +dvlv naG ++ ++ ++i+ e+++   + nv+g l   q  a  + +   + G   na + a  +++++ +a ++t
  MMETSP1061-20121228|5337_1  24 VFGFGPGIGAAVARKWCTEGYSVAVMARSHEKLRAFEADFP---NNSKGYACDVTKPEAIDQTVASIEADLGPIDVLVWNAGSGVWKTWDTIDLESFDLHMKTNVHGLLRATQRIAPGMIERAAGgGESANANAHAHAHAHANTAATATT 170
                 668899********************999999998887765...567889***************************************************************98888777766649999**999999988888776665 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0086
   TIGR02415 135 aasiagvegspelsaysstkfavrgltqtaakeLakkgitvna 177
                   + a+ +g+p    ++  k a r l+q+ a++L ++g+ v  
  MMETSP1061-20121228|5337_1 178 TGATASLRGKPFTVGFAPQKGAQRLLAQSLARDLGPRGVHVGL 220
                 5678999999*99************************998865 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.0   1.4e-16   5.8e-14       7     130 ..      26     145 ..      21     187 .. 0.89

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 1.4e-16
   TIGR01829   7 GglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfG 130
                 G   GiG+a++++  ++Gy v+   +  +e+ ++++ +  +   + + +  dv++ e+  ++va++ea+lGp+dvlv naG    +++  ++ e+++  ++tn+++++  t+++  gm+er+ G
  MMETSP1061-20121228|5337_1  26 GFGPGIGAAVARKWCTEGYSVAVMAR-SHEKLRAFEAD--FP-NNSKGYACDVTKPEAIDQTVASIEADLGPIDVLVWNAGSGVWKTWDTIDLESFDLHMKTNVHGLLRATQRIAPGMIERAAG 145
                 6667****************987776.44555555443..33.34567899**********************************************************************987 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   2.5e-16     1e-13       6     130 ..      24     145 ..      20     171 .. 0.88

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 2.5e-16
   TIGR01963   6 vtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwG 130
                 v G + Gig+a+a++   +G +v+v   ++e+++a +++  +   + + ++ dvtk e+i+++++ ++a++g +d+Lv nAG    +  +  + e+f+  ++ n+++ +++++ + p+m ++  G
  MMETSP1061-20121228|5337_1  24 VFGFGPGIGAAVARKWCTEGYSVAVMARSHEKLRAFEADFPN---NSKGYACDVTKPEAIDQTVASIEADLGPIDVLVWNAGSGVWKTWDTIDLESFDLHMKTNVHGLLRATQRIAPGMIERAAG 145
                 678899********************9999999998887765...567899********************************************************************988766 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.2     2e-13   8.2e-11     418     565 ..      23     166 ..      12     175 .. 0.82
   2 ?    2.9   0.0     0.015         6     538     595 ..     165     222 ..     152     238 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2e-13
   TIGR02632 418 lvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggn.lvfiasknavvakknala 565
                 +v G + GiG +var+   eG  v +    +e+++a +a++      +++     dvt+ ea+ +++a +  + G +d++v naG  v k  +   le++dl+++ ++ G    +++ a  + +++ gg       ++    a+ n+ a
  MMETSP1061-20121228|5337_1  23 AVFGFGPGIGAAVARKWCTEGYSVAVMARSHEKLRAFEADFP-----NNSKGYACDVTKPEAIDQTVASIEADLGPIDVLVWNAGSGVWKTWDTIDLESFDLHMKTNVHGLLRATQRIAPGMIERAAGGGeSANANAHAHAHAHANTAA 166
                 7999*************************************9.....45566678*******************************************************998888777777666666540333333333334444333 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.015
   TIGR02632 538 llrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntva 595
                   ++  +  +++ +++  ++  k+ ++ ++  k a+  l++ la +l++ g+ v    
  MMETSP1061-20121228|5337_1 165 AATATTITPSILVTGATASLRGKPFTVGFAPQKGAQRLLAQSLARDLGPRGVHVGLFI 222
                 455667778899999999**********************************997655 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.1   1.6e-10   6.7e-08      71     147 ..      71     147 ..      41     172 .. 0.87
   2 !    8.8   0.0   0.00052      0.21     147     191 ..     174     218 ..     165     227 .. 0.93

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1.6e-10
   TIGR03971  71 kadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGs 147
                  +dv k e++ + v++  + +G +dv+v naG   + +   ++ e +d  + +n++G  ++ + + P +ier  GG 
  MMETSP1061-20121228|5337_1  71 ACDVTKPEAIDQTVASIEADLGPIDVLVWNAGSGVWKTWDTIDLESFDLHMKTNVHGLLRATQRIAPGMIERAAGGG 147
                 6799999*************************9999888889******************************99985 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00052
   TIGR03971 147 siiivssvaglkalpglahyaaakhGlvgltktlanelaeygirv 191
                 si++++++a+l++ p+++ +a  k     l+++la++l++ g+ v
  MMETSP1061-20121228|5337_1 174 SILVTGATASLRGKPFTVGFAPQKGAQRLLAQSLARDLGPRGVHV 218
                 89**********************9999************99988 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   3.2e-12   1.3e-09      10     131 ..      24     140 ..      17     179 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 3.2e-12
   TIGR03325  10 vtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnag..iwdystalvdipddrid.eafdevfeinvkgyllavkaalpalv 131
                 v g + g+g a+  ++ +eg  vav+ +s ++l+++ea+ +++  g + dv   +   ++va   + +g +d+l+ nag  +w           d id e+fd  ++ nv+g l a +   p ++
  MMETSP1061-20121228|5337_1  24 VFGFGPGIGAAVARKWCTEGYSVAVMARSHEKLRAFEADFPNNSKGYACDVTKPEAIDQTVASIEADLGPIDVLVWNAGsgVWKTW--------DTIDlESFDLHMKTNVHGLLRATQRIAPGMI 140
                 678899***********************************************************************972256432........3333378999999999999998877766655 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   6.2e-09   2.6e-06      10     132 ..      24     145 ..      18     154 .. 0.81
   2 ?   -2.4   0.0       1.5     6e+02     171     195 ..     161     185 ..     152     190 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 6.2e-09
   TIGR01832  10 vtGantGlGqgiavglaeaGadivgvgiselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaG..iirredavefsekdwddvlnvnlkavfllsqavakkllkqGrk 132
                 v G   G+G ++a    + G  +  +++s+ ++ ++  ++  ++ +    d++++ea+++ v+++ +  g id+lv naG  + +  d++++    +d  +++n++ ++  +q +a  ++++   
  MMETSP1061-20121228|5337_1  24 VFGFGPGIGAAVARKWCTEGYSVAVMARSH-EKLRAFEADFPNNSKGYACDVTKPEAIDQTVASIEADLGPIDVLVWNAGsgVWKTWDTIDLE--SFDLHMKTNVHGLLRATQRIAPGMIERAAG 145
                 568889999999999999999987776654.334444455677888999*****************************963378888888886..56778******************9998654 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.5
   TIGR01832 171 wakkginvnaiaPGyletnntealr 195
                 +a+++    +i+P  l t  t++lr
  MMETSP1061-20121228|5337_1 161 HANTAATATTITPSILVTGATASLR 185
                 5555566677888888888888888 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.1e-06    0.0017       3     129 ..      24     146 ..      22     156 .. 0.84
   2 ?   -4.1   0.0       4.2   1.7e+03       5      34 ..     198     227 ..     197     234 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.1e-06
   TIGR01831   3 vtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqg.gnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkgg 129
                 v g   gig a+a k  ++g+ +av  rs+     e + a++a+   n++    dv++ +a+ + + +  a+ g    +v nag    +++ ++  e +d  ++tn+ g+    + +   mi+   gg
  MMETSP1061-20121228|5337_1  24 VFGFGPGIGAAVARKWCTEGYSVAVMARSH-----EKLRAFEADFpNNSKGYACDVTKPEAIDQTVASIEADLGPIDVLVWNAGSGVWKTWDTIDLESFDLHMKTNVHGLLRATQRIAPGMIERAAGG 146
                 567788*******************98875.....4556666654145666788999988888887766677799999************************************99999999887776 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 4.2
   TIGR01831   5 gasrgigraialklaadgfeiavhyrsdra 34 
                 ga r + +++a  l   g ++++ +  ++ 
  MMETSP1061-20121228|5337_1 198 GAQRLLAQSLARDLGPRGVHVGLFIIDGQV 227
                 666667777777777777777777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1286.89
//
Query:       MMETSP1061-20121228|5331_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 808.97
//
Query:       MMETSP1061-20121228|5338_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1026.11
//
Query:       MMETSP1061-20121228|5340_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1045.35
//
Query:       MMETSP1061-20121228|5342_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-18   64.0   5.2    4.9e-18   63.3   3.6    1.3  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    5.7e-14   49.6  17.5    5.7e-14   49.6  12.2    1.5  2  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    2.4e-11   40.7  19.9      3e-11   40.4  13.8    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
      3e-10   37.7   5.1      3e-10   37.7   3.6    1.4  2  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    2.5e-05   20.8   6.7    2.5e-05   20.8   4.6    1.6  2  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    0.00039   16.0   1.1    0.00045   15.8   0.8    1.1  1  TIGR02712 urea_carbox: urea carboxylase
     0.0037   12.6   0.6     0.0044   12.3   0.4    1.1  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
  ------ inclusion threshold ------
      0.018   12.9   0.6      0.034   12.1   0.4    1.5  1  TIGR00527 gcvH: glycine cleavage system H protein
        1.3    5.2  10.0       0.44    6.8   1.3    2.0  2  TIGR03734 PRTRC_parB: PRTRC system ParB family protein
        9.6    4.5  23.7      0.015   13.6   4.9    2.5  2  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   3.6   1.2e-20   4.9e-18       4     118 ..      72     185 ..      69     204 .. 0.74

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 1.2e-20
   TIGR01347   4 kvPelaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaeleessaaaeaasekskeekeekaaakaekakeaaekkkalspaar 118
                 kvP++++s+te+t++ew  +vG++v+++++++ +etDkv++++++ ++Gv+ ++  + +d ve+g  l e++ +++a+ +a+ ++++    ++++ + +  ++a++++a++ aa+
  MMETSP1061-20121228|5342_1  72 KVPTMGDSITEGTIVEWVAQVGQKVEEEDVVALIETDKVTVDIKAAKAGVIVQQFGAVDDEVEVGADLYEIDTEAIATVEATTAAAA-TTTTTTEPTPPVVAEAPAAAAVATAAS 185
                 8**********************************************************************9855554444433322.222233333333333333333333322 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   1.2      0.94   3.9e+02     302     327 ..      21      46 ..       6      70 .. 0.49
   2 !   49.6  12.2   1.4e-16   5.7e-14       6     127 ..      72     189 ..      67     198 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.94
   TIGR02927 302 aaaeaaeeakeaaaaeaaaaapaapa 327
                 aaa +      a a  a+  a + pa
  MMETSP1061-20121228|5342_1  21 AAATGTATVTVADAVTASGKALSRPA 46 
                 22333333333333333333333333 PP

  == domain 2    score: 49.6 bits;  conditional E-value: 1.4e-16
   TIGR02927   6 kmpalGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspaaGvlleikaeeddtvevGgvlaiiGeegeagsedaeapaepeeepaeeppkeepkkaaeapaeaaaqaqgsgeat 127
                 k+p +G+s+teGt+ +w+ +vG  ve ++ +  + tdkv  +i +  aGv+++     dd vevG+ l  i  e+ a+ e ++a+a+       ep    p   aeapa aa  + +s++ t
  MMETSP1061-20121228|5342_1  72 KVPTMGDSITEGTIVEWVAQVGQKVEEEDVVALIETDKVTVDIKAAKAGVIVQQFGAVDDEVEVGADLYEIDTEAIATVEATTAAAATTTT-TTEP---TPPVVAEAPAAAAVATAASASVT 189
                 799************************999999*********************99************99999999988877555544332.2222...23334455555555555555544 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4  13.8   7.4e-14     3e-11     111     270 ..      24     187 ..       2     203 .. 0.69

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 7.4e-14
   TIGR01348 111 sveadkaaqevqdafketvkageagaaadaakkeaaPaeaqasgvkev.kvPdiGd.aekvevievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvlevegaapaaaeapakaeaaa...aapaaeaeeaaaapaaakaeak 270
                 +++   ++ +   + ++++ +  a aa+++a+++a  ++++a   k++ kvP +Gd + +++++e + +vG +v+++  +  +e+dk ++++ a+ +Gv+ +    v d+v++G  +  +++e+ a   a++ a+a++++   ++p   ae++aaa+ a+ a+a+
  MMETSP1061-20121228|5342_1  24 TGT-ATVTVADAVTASGKALSRPAFAASTTAQQRAFVSATNALLEKHItKVPTMGDsITEGTIVEWVAQVGQKVEEEDVVALIETDKVTVDIKAAKAGVIVQQFGAVDDEVEVGADLYEIDTEAIATVEATTAAAATTTTttePTPPVVAEAPAAAAVATAASAS 187
                 222.2333333344445555666777888889999999988777777647******999*****************************************999999********999999998877665544444433330003344444444444443333332 PP

>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.1       2.1   8.5e+02     109     109 ..      34      34 ..       6      63 .. 0.41
   2 !   37.7   3.6   7.2e-13     3e-10       3     127 ..      72     187 ..      70     203 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.1
   TIGR01349 109 e 109
                 +
  MMETSP1061-20121228|5342_1  34 A 34 
                 1 PP

  == domain 2    score: 37.7 bits;  conditional E-value: 7.2e-13
   TIGR01349   3 kmPaLsPtmeeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknyklessasapkpkekaeqsaeesaesakseasaekakess 127
                 k+P++  +++eG++++w  + G kv+e dv+a ietDk t+d+++ + g++++   +    +v+v++ +  +  + e++++    ++   +a+a++++++++ +++  ae a+++a++ +a++ s
  MMETSP1061-20121228|5342_1  72 KVPTMGDSITEGTIVEWVAQVGQKVEEEDVVALIETDKVTVDIKAAKAGVIVQQFGAVDD-EVEVGADL--YEIDTEAIAT----VEATTAAAATTTTTTEP-TPPVVAE-APAAAAVATAASAS 187
                 68999999*****************************************99987765554.48888876..4455556663....33445555566666666.5555555.22222222222222 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   4.6     6e-08   2.5e-05     498     579 ..      51     136 ..      11     139 .. 0.64
   2 ?   -1.2   0.4      0.27   1.1e+02     482     525 ..     138     181 ..     132     190 .. 0.51

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 6e-08
   TIGR01108 498 easaaaaksagtva....akakastdvtaplaGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavg 579
                 +++ + a  ++t+a      +k  t   +   G+iv+  ++ G++v+e +v+ ++e+ k+  +ikaa+aG++ + + ++ d+v vg
  MMETSP1061-20121228|5342_1  51 TTAQQRAFVSATNAllekHITKVPTMGDSITEGTIVEWVAQVGQKVEEEDVVALIETDKVTVDIKAAKAGVIVQQFGAVDDEVEVG 136
                 22222222333333111122222333334567***************************************999999999998887 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.27
   TIGR01108 482 kaeevkvseskevskleasaaaaksagtvaakakastdvtapla 525
                   +e+  + + +v+ ++a+aa++++++  ++++ a ++ +a++a
  MMETSP1061-20121228|5342_1 138 DLYEIDTEAIATVEATTAAAATTTTTTEPTPPVVAEAPAAAAVA 181
                 45555555555444444444444444344466666666665555 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.8   1.1e-06   0.00045    1127    1197 ..      69     139 ..      30     143 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-06
   TIGR02712 1127 eleegavaveselagrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdal 1197
                  ++++  ++ +s  +g++ + +++vg++ve++d++ ++e+ k+ + ++a++aG++++   +  d+ve G  l
  MMETSP1061-20121228|5342_1   69 HITKVPTMGDSITEGTIVEWVAQVGQKVEEEDVVALIETDKVTVDIKAAKAGVIVQQFGAVDDEVEVGADL 139 
                  3444445556778999***************************************9999999999988766 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.4   1.1e-05    0.0044    1081    1133 ..      81     133 ..      47     143 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.1e-05
   TIGR01235 1081 mpGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGeki 1133
                    G+++e ++++G+kve+ dv++ +e+ k+ + ++a k+G++ + +    +++
  MMETSP1061-20121228|5342_1   81 TEGTIVEWVAQVGQKVEEEDVVALIETDKVTVDIKAAKAGVIVQQFGAVDDEV 133 
                  369**************************************988765555555 PP

>> TIGR00527  gcvH: glycine cleavage system H protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.4   8.2e-05     0.034      40      89 ..      85     135 ..      66     159 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.2e-05
   TIGR00527  40 fve.lPevGaevsaeeslgsvesvkaaselyaPvdGtvvevnealedsPel 89 
                  ve + +vG++v+ e+ ++ +e+ k + ++ a   G +v+   a++d+ e+
  MMETSP1061-20121228|5342_1  85 IVEwVAQVGQKVEEEDVVALIETDKVTVDIKAAKAGVIVQQFGAVDDEVEV 135
                 5553468*************************************9999886 PP

>> TIGR03734  PRTRC_parB: PRTRC system ParB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   1.0     0.014       5.6     387     485 ..       8     111 ..       4     119 .. 0.61
   2 ?    6.8   1.3    0.0011      0.44     328     391 ..     144     210 ..     123     223 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.014
   TIGR03734 387 Rkvlakevaleaeks....rrvlialalasdarvikeeklkkvvekltgeksa.aaaeleellesllaldkeklekllqaltasaaedlevkalkellkllevd 485
                 R+vlak +++ ++ +    ++v +a a++++++ ++  ++   ++      ++   a le+ ++++ ++ +++ e  +++  a +++ +e++++++l+++ +v 
  MMETSP1061-20121228|5342_1   8 RTVLAKLLIARSAAAatgtATVTVADAVTASGKALSRPAFAASTTAQQRAFVSaTNALLEKHITKVPTMGDSITEGTIVEWVAQVGQKVEEEDVVALIETDKVT 111
                 56666655544433300003333443444444444444443333322222222255667888999999999*************************99877654 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0011
   TIGR03734 328 aakaaaekpeaaaagadtaakeksaaekasakaakaaakkaaasseeservkeyr...ekvwRkvla 391
                 +++ a+ + ++aaa ++t+++e ++   a a aa a a++a as+ +++rv + +   ++ wR++l+
  MMETSP1061-20121228|5342_1 144 TEAIATVEATTAAAATTTTTTEPTPPVVAEAPAAAAVATAASASVTPPTRVPSIHflgKEGWRRALS 210
                 3333555566666666666777777778899999999*************98876444678888875 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   4.9   3.7e-05     0.015      50     154 ..      39     142 ..      12     144 .. 0.62
   2 ?   -2.8   5.7       4.1   1.7e+03      34      70 ..     153     189 ..     136     198 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.7e-05
   TIGR00531  50 pvvaqvp..avasaavpaaavaaeaakadkkehlvlsPmvGtFYrapsPeakpfvevGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLivi 154
                  + +  p  a++++a++ a v+a    a  ++h+ + P +G          +   +vG+kv++ dvv+++e  k+  +i a +ag +v+      + ve g  L  i
  MMETSP1061-20121228|5342_1  39 GKALSRPafAASTTAQQRAFVSATN--ALLEKHITKVPTMGDSITEG-TIVEWVAQVGQKVEEEDVVALIETDKVTVDIKAAKAGVIVQQFGAVDDEVEVGADLYEI 142
                 2222333224444444444444444..44556666778888654433.33445568*******************************99887777888888887766 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 4.1
   TIGR00531  34 keaaaakksvlqqaaapvvaqvpavasaavpaaavaa 70 
                   aaaa+++   +++ pvva++pa+a++a+ a+a  +
  MMETSP1061-20121228|5342_1 153 TTAAAATTTTTTEPTPPVVAEAPAAAAVATAASASVT 189
                 3344455555566666666666655555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1023.92
//
Query:       MMETSP1061-20121228|5341_1  [L=1065]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       438  (0.106777); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.15s 00:00:00.71 Elapsed: 00:00:00.52
# Mc/sec: 2703.24
//
Query:       MMETSP1061-20121228|5349_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00048   18.4   1.4    0.00057   18.2   1.0    1.1  1  TIGR01601 PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1


Domain annotation for each model (and alignments):
>> TIGR01601  PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   1.0   1.4e-07   0.00057      29      72 ..      32      76 ..      19      85 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.4e-07
   TIGR01601 29 sdvgnks.icgskeinrsnekndieskseiqLnnnnpkddeddkd 72
                 +++ +s + + k+i+r+  +++  + + i  nnnn++++ d  d
  MMETSP1061-20121228|5349_1 32 DGMKRRSiVLARKRIERASANDGNSNHHIINSNNNNNNNNTDRDD 76
                556556516799*****9999888888888877777775555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 694.68
//
Query:       MMETSP1061-20121228|5345_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2694.78
//
Query:       MMETSP1061-20121228|5350_1  [L=1075]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1075 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.46
# Mc/sec: 3084.53
//
Query:       MMETSP1061-20121228|5348_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.11s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 2124.40
//
Query:       MMETSP1061-20121228|5344_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-34  117.8   4.9    1.4e-34  117.5   3.4    1.0  1  TIGR01171 rplB_bact: ribosomal protein L2


Domain annotation for each model (and alignments):
>> TIGR01171  rplB_bact: ribosomal protein L2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.5   3.4   3.5e-38   1.4e-34      39     241 ..       9     220 ..       3     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: 117.5 bits;  conditional E-value: 3.5e-38
   TIGR01171  39 kkGrnnrGritvrhkggghkklyrvidfkrdkkeieakvasieydPnrsariaLllyadG.....ekryilaPkglkvgdtvvsgeeadikvgnalplkniPvGttvhnielkpgkGgqlvrsaGtsaqilakeg..kyvllrlpsgevrkvekeCratiGevgnedhknvklGkaGrkrwl..Gvr...PtvrGvamnPvdhPhGGGegrtskg 241
                 +kG++   +  +r + g  k   r +df  ++  i+++v++i +dP r a i+ +++++      ++   l  +g+ +g+ ++ g++a +  gn lpl+++P Gt+v nie k g  g ++r++G++a ++++++    + lrlpsg  ++v ++ ra iG v+    + + l kaGr+ ++   +r   P++rGva nPv+hPhGGG+ ++ +g
  MMETSP1061-20121228|5344_1   9 RKGKSTIFKAHTRTRKGAVK--LRSLDFAEKQGYIKGTVKEIIHDPGRGAPICKVQFNNAyryqkDNELFLCTEGMYTGQFIYCGKKASLTCGNVLPLNSVPEGTIVCNIEAKRGDRGAFARASGSYAIVVTHDEekGTTKLRLPSGGKKTVPSTVRAQIGIVAGGGRTDKPLLKAGRAYHKyaVKRncwPKIRGVAKNPVEHPHGGGNHQH-IG 220
                 55555555666666666655..79********************************9986222223457899***********************************************************9987446889**********************998888888888888766422223444******************9887.55 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1211.47
//
Query:       MMETSP1061-20121228|5353_1  [L=1505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-72  241.5   0.0    8.2e-48  161.1   0.0    3.3  2  TIGR01391 dnaG: DNA primase
    5.7e-05   20.6   0.0    0.00012   19.5   0.0    1.5  1  TIGR00646 MG010: DNA primase-like protein
    0.00014   18.5   0.1    0.00025   17.7   0.0    1.3  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D


Domain annotation for each model (and alignments):
>> TIGR01391  dnaG: DNA primase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   2.4e-23   3.2e-20       5      77 ..     129     204 ..     126     231 .. 0.90
   2 !  161.1   0.0     6e-51   8.2e-48     105     392 ..     268     648 ..     254     666 .. 0.82

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 2.4e-23
   TIGR01391   5 evieelkekvdivdvvsey..vkLkkkG.knyvalCPFhkektpSfsVspekqfyhCFgCgagGdaikFlmeiekl 77 
                 e +++l+++vdiv+++++y   k ++++ +n ++lCPFh++++pS++++ ++++y+CF+CgagG+a+kF+ e+ +l
  MMETSP1061-20121228|5353_1 129 EELDSLLDRVDIVSLIESYdlPKFQRTSpDNAKCLCPFHDDRNPSLQINGQRGIYKCFSCGAGGNALKFVREYAEL 204
                 67899*************986688887736789***************************************9876 PP

  == domain 2    score: 161.1 bits;  conditional E-value: 6e-51
   TIGR01391 105 ekekkkkllelleeaakffkkeLkktkegekaldYLkkRglseetikrFelGyapekeea.............................................laklleekkkikeellveagllvkkeng...kvydrFrdRiifPikdskg.kvvgFgGRald........dekpKYlNspetklFkKselLygldkakkeikkeke.................lllvEGymDvialhqagiknaVAslGtalteehlkllkrlak....eiilcfDgDkAGkkAalraiekllelg........ikvkvvklp.egkDpdellrkegk.....ealkkllen.skslveflieelkekknldsaeekaklveellk 392
                  + +++++l+++  aa+ff+++L   +++  a++ L++Rg++++t+k+F +Gyape+                                                 ++  ++k++ + e   e +++ ++++    +++drFr R+++Pi d+ g +v gFgGR+l+         +++KYlNspe+ +FkK+elL+g + +k ++++  +                 l++vEGymD+ial+qag+k++VAs+Gtalt+e+l +  + a+    +i+lc+D+D+AG++A++r +    +          +++ v++lp + kDp+e+l+++++     e++++ + + +++++++++++l   +n + +e +    +++++
  MMETSP1061-20121228|5353_1 268 GTTSRERILHANLFAAAFFEESLFGLPSAGLARTHLRSRGIRPTTVKAFAIGYAPESYFLgsdrrllqksqswgegslvhhlrdegftpqeildaglailtrkgkEQQSQNSKRDSDGENPDEDKVVRAQQHRdfsTIMDRFRGRLVVPIFDATGsHVLGFGGRILEssveaasdFKAAKYLNSPESLVFKKKELLFGQHMVKFATASDTKttskssattaarrrprsLIIVEGYMDAIALWQAGVKETVASMGTALTKEQLMAAANTARqtggRIVLCLDNDNAGIAAVTRLCAGSDPILlsvteksnLEIFVANLPgNVKDPAEFLEENEEakdldEKFRAEVIDgAQEWSNWYMNSLVAAYNSSATEGEDGSFSQIFD 648
                 567789999******************9877*************************955588999**********************************99998633333344455556666666666654333569****************994578*******9888766544789*********************999887776666889999*******************************************98766555445579*****************976554444444456669999***973569******98876222224677777777999999999999999999988887766666665 PP

>> TIGR00646  MG010: DNA primase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   8.7e-08   0.00012      92     174 ..     478     560 ..     455     607 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 8.7e-08
   TIGR00646  92 kppskseaflglkelvikdnsiylvegdfdwlafrkagilnslplcgltlsdkqvkflk...qkkikkvvlcldndlagkvaaknl 174
                 k  sks a    ++      s+ +veg +d +a+ +ag+ +++   g +l+++q+       ++   ++vlcldnd ag +a + l
  MMETSP1061-20121228|5353_1 478 KTTSKSSATTAARRR---PRSLIIVEGYMDAIALWQAGVKETVASMGTALTKEQLMAAAntaRQTGGRIVLCLDNDNAGIAAVTRL 560
                 666666666666654...46899****************************99987654111344579***********9987765 PP

>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.9e-07   0.00025     137     262 ..     627     751 ..     620     793 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.9e-07
   TIGR02031 137 Liatyd..peegeealrehllDRlalivsleevaslearveivrlelaeeveeevndelelakaqiekaRellkqVtiseeqvkelvleavklGveghRadlfavraAkalaAlegReeVeeeDlklA 262
                 L+a y+  ++ege++   ++ D+la+++s+ + ++ + ++++    + +++ ++ ++     k +ie+ R++   ++++++ v+++++ a ++ ++++R + +a+ a + +aA+++  e+  +Dl lA
  MMETSP1061-20121228|5353_1 627 LVAAYNssATEGEDGSFSQIFDKLAFFLSVFQSVDDRMKKAAFIAPKLSDIVDTNEERDVNDKDRIEASRTA--RIQLASNLVEKASHVAHSKSMDAQRNNQLAMGATRKEAAISKSLEIS-QDLTLA 751
                 88999833468999999************988888887777777777777777777778888999*****96..899**************************************999986.477776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.65u 0.15s 00:00:00.80 Elapsed: 00:00:00.46
# Mc/sec: 4318.34
//
Query:       MMETSP1061-20121228|5356_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.9   0.1      0.045   11.1   0.0    1.3  1  TIGR04100 rSAM_pair_X: radical SAM enzyme, TIGR04100 family


Domain annotation for each model (and alignments):
>> TIGR04100  rSAM_pair_X: radical SAM enzyme, TIGR04100 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.1e-05     0.045      35      68 ..     348     381 ..     336     385 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.1e-05
   TIGR04100  35 dsdslWlehePsleeilaaldkfdlskyeelvfC 68 
                 d+ ++W e++Ps+eei ++l++  ++++e  v C
  MMETSP1061-20121228|5356_1 348 DARAVWKENQPSIEEIEEELREAGYTHLERTVEC 381
                 68899**********************9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 2010.63
//
Query:       MMETSP1061-20121228|5357_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00048   17.0   0.3     0.0012   15.6   0.2    1.6  2  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
  ------ inclusion threshold ------
      0.039   10.8   0.1      0.058   10.2   0.0    1.1  1  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.11   2.2e+02     193     233 ..     191     230 ..     187     245 .. 0.75
   2 !   15.6   0.2     6e-07    0.0012      39     132 ..     246     341 ..     229     351 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.11
   TIGR01941 193 dlfdlvskveeetvrayslanypeekgiiklnv.riatppfa 233
                 ++fd ++++ + t+    l ++p e + ++ln+ ri   p  
  MMETSP1061-20121228|5357_1 191 EMFDCECRNFDATIG--LLGSFPPEIESLTLNIkRIRRWPKV 230
                 678888888888875..4789***********9556666654 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 6e-07
   TIGR01941  39 deeksltveaGdkllntlaskgifissacGGggs.c.gqcrvrvvegggeilptekshiskreakegwrlscqvkvkedleleleeevfgvkkwec 132
                 d+e++l+  aG++l  +l+++gi        ++  c g+c v +  g + + p  ++     + + ++rlsc++ v  +++       +++++w++
  MMETSP1061-20121228|5357_1 246 DNEETLELFAGENLKRALQTRGIIFEDRDAAKCDfCgGKCTVAIDMGMQLMNPMGLTEEKLMKRNPKCRLSCKTVVGYNMQEGNARMRINLNEWKA 341
                 578999*****************99875544432132678888887777666655544444445568*************9888888888888876 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   2.8e-05     0.058      49     101 ..     129     188 ..     108     193 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.8e-05
   TIGR00225  49 eleGiGiqvqmedd......eivivsplegsPAekagikpgDkIikvdgk..svagmeldd 101
                    G+Gi++ +  +       ++ivs + g  Aekagi +gD+I +v+ +  +  g ++++
  MMETSP1061-20121228|5357_1 129 RNGGMGIELLELAGgraddyGLTIVSGVSGN-AEKAGIITGDSIASVEVNrvDGSGTNVEE 188
                 4568899888766667777799*****9985.************87765511555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1464.25
//
Query:       MMETSP1061-20121228|5360_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|5359_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0005   17.2 108.7     0.0005   17.2  75.4    3.6  3  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -16.6  28.8         1   4.1e+03      32     152 ..     158     284 ..     137     298 .. 0.49
   2 !   17.2  75.4   1.2e-07    0.0005      35     241 ..     286     492 ..     278     493 .. 0.53
   3 !    7.1  42.5   0.00015      0.62     135     221 ..     454     530 ..     453     535 .. 0.32

  Alignments for each domain:
  == domain 1    score: -16.6 bits;  conditional E-value: 1
   TIGR02794  32 eggeiiqAvlvD.paavaqqanrlqqqekkaakke..................pkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaak.kaeeaakekeekkkqaeeakakqaaEa..kakaeaeaKaekk 152
                 ++     A + + p+av +q++r+++        e                  + p+++++++q++++q+++  +++q+a +a  ++  +   +a+  ++ ++  a+ e + k k    a ak+a+    + +a a    ekk
  MMETSP1061-20121228|5359_1 158 ST----AAEVAQkPQAVRKQMERIEAIDR-----EesytakrlvvakpmpstpQSPPQQPPQQQQQIQQAPQPSQPQQPAAAAA-ANV-STPPPAKTTSQiNKSPARTETQ-KPKTTKTAPAKKATATpaTGAASA----EKK 284
                 22....23333335555555555554331.....13333344577666665556777777777777777777777777776554.444.3444555545545555555333.333332333332222211333333....333 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 1.2e-07
   TIGR02794  35 eiiqAvlvDpaa..vaqqanrlqqqe.....kkaakke........pkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaea.Ka..ekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeak.KakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeaeakakakaeaerk 241
                 ++ qA   Dp++  +++++++lq+        +a++k+         k ++ +++++   +q++  ++++ + + +  k +            ++e+a+ e+eek++ + ea+ak++aEak+k e+e+ ++  e++a+e+A++ka ee+ ++ +aeak++aE    k++ eaea+ Ka+aeaeaK+++e  k++ eaeAka+Ae eAk+Kae e+ +  +aea++k
  MMETSP1061-20121228|5359_1 286 DTTQALSTDPKSesTTTTVDTLQESSiaagiRSAPRKKltafdlmkAKFNKTPDATTLDDQQTKDSKETNIETDNEVAKAQ------------EKEKAQNEAEEKNRIDGEARAKSEAEAKRKTEEEKqRKeaEARAEEDARRKAKEER-KRLEAEAKAEAE----KQRIEAEARaKAEAEAEAKKAEE-EKRRVEAEAKARAEGEAKRKAEEERRRL-EAEARKK 492
                 666777777666223333333333334322222222224444444323333333333333444444444444444433333............33444444444455555555555555544444443222345578888999999999.888899999998....56777777777777888777444.6777778888899999999999777755.5555555 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.00015
   TIGR02794 135 qaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaeakKakaeaeaKakaeeakaKaeaeAkaKAeae 221
                 +a+E k++ eaeaKa  +a+ eA++kaEee+  + +aea+kk+E e  +k+ eaea Ka+aea++K ++   k+K   eAk KAe+e
  MMETSP1061-20121228|5359_1 454 KAEEEKRRVEAEAKA--RAEGEAKRKAEEER-RRLEAEARKKEE-E--RKRLEAEA-KAEAEAKKKVEEV-RKRKE--EAKRKAEEE 530
                 233333444443322..33333555555555.333333333333.2..33444444.3444443333211.11111..122222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       655  (0.159678); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        55  (0.0134081); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.01u 0.15s 00:00:01.15 Elapsed: 00:00:00.56
# Mc/sec: 1263.32
//
Query:       MMETSP1061-20121228|5363_1  [L=794]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       571  (0.1392); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 2687.16
//
Query:       MMETSP1061-20121228|5365_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0078   12.5   0.0     0.0091   12.3   0.0    1.1  1  TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I


Domain annotation for each model (and alignments):
>> TIGR02843  CyoB: cytochrome o ubiquinol oxidase, subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.2e-06    0.0091     535     562 ..      39      66 ..      24      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.2e-06
   TIGR02843 535 grtlewstsspaplynfavvpkveelda 562
                 + +lew++ssp+pl++f++ p v e+d+
  MMETSP1061-20121228|5365_1  39 ANSLEWALSSPPPLHQFTEPPLVVETDH 66 
                 789*******************999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 910.72
//
Query:       MMETSP1061-20121228|5371_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1815.99
//
Query:       MMETSP1061-20121228|5366_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2040.33
//
Query:       MMETSP1061-20121228|5370_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1785.00
//
Query:       MMETSP1061-20121228|5372_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1037.06
//
Query:       MMETSP1061-20121228|5373_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.5    7.9   6.6       0.65    7.5   4.6    1.1  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein
       0.97    4.8   7.2        1.4    4.3   5.0    1.2  1  TIGR02102 pullulan_Gpos: pullulanase, extracellular
        1.7    6.4   6.6        3.1    5.6   4.6    1.3  1  TIGR02205 septum_zipA: cell division protein ZipA


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.6   0.00048      0.65     136     243 ..     278     385 ..     237     391 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00048
   TIGR03354 136 edlddslteagegaaprpapqaasldPlkaldqepasaadlddga..lsaelaeevaealpadlasidaestlepelaplpaaqpapapqeqeqaseav...altaflrglgl 243
                 + ++ +  +++++ +p +ap+   ++P ka  ++p++ +d ++    ++ ++ ++ ++ +p+++ + ++++   ++++p  +++p++++ ++  ++ a+   a+ a++ ++g+
  MMETSP1061-20121228|5373_1 278 NSVAAFCNTEAPSETPSEAPS---KAPSKAPSEAPRRIKDSKKTKspEKTKAPKPTKSPKPTKAPEKTKSPKKTKAPKP--TKSPKKTKAPESGEDTATeeiAMMAMAMTMGV 385
                 344444455555555666555...6788888888888888888443333333333333444444444444333334443..33333333333333333221366666666664 PP

>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   5.0     0.001       1.4    1007    1100 ..     286     382 ..     263     389 .. 0.59

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.001
   TIGR02102 1007 keasektapkk..eeesea.dkekkedkdeskdkdkvaeaenkesktpagskk.eneeveksskekkeekldkeaklpktaekss.kllllagiillll 1100
                  +ea+++t++++  +  s+a ++ +++ kd++k+k++++++++k +k+p  +k+ e+ +++k +k  k  k  k+ k p+++e++  + +++   ++++ 
  MMETSP1061-20121228|5373_1  286 TEAPSETPSEApsKAPSKApSEAPRRIKDSKKTKSPEKTKAPKPTKSPKPTKApEKTKSPKKTKAPKPTKSPKKTKAPESGEDTAtEEIAMM--AMAMT 382 
                  44444444332002223330334445588888888999999999888866655144566666666666777788888998876641344444..33333 PP

>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   4.6    0.0022       3.1      69     156 ..     294     373 ..     267     385 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0022
   TIGR02205  69 heipqpseqkepsiseavdkerkksvedeeasvpaqpvqqqldlpqaekvaqqtvepreakslavasaeeeevekalevaakpkekdk 156
                  e+p+  + k ps++ +  k++kk + +e++++p +p++     p++ k  ++t +p+++k+ ++ ++ +++ +  +e   ++  +++
  MMETSP1061-20121228|5373_1 294 SEAPSKAPSKAPSEAPRRIKDSKKTKSPEKTKAP-KPTKS----PKPTKAPEKTKSPKKTKA-PKPTKSPKKTKA-PES-GEDTATEE 373
                 4567777788899998888999999999999999.66655....777777777777877776.444444433333.222.33333444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1571.87
//
Query:       MMETSP1061-20121228|5374_1  [L=1061]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1061 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.38
# Mc/sec: 3685.27
//
Query:       MMETSP1061-20121228|5378_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 784.60
//
Query:       MMETSP1061-20121228|5375_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2343.94
//
Query:       MMETSP1061-20121228|5380_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 2833.64
//
Query:       MMETSP1061-20121228|5377_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2960.33
//
Query:       MMETSP1061-20121228|5382_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-05   20.6   0.2    0.00037   18.2   0.0    2.1  2  TIGR00249 sixA: phosphohistidine phosphatase SixA
     0.0022   15.3   0.3        3.3    5.0   0.0    3.3  3  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase


Domain annotation for each model (and alignments):
>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.087   1.8e+02       3      15 ..      96     108 ..      94     119 .. 0.80
   2 !   18.2   0.0   1.8e-07   0.00037      17      60 ..     144     196 ..     140     262 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.087
   TIGR00249   3 lylmrHGeAkeka 15 
                 +yl+rH e +e+ 
  MMETSP1061-20121228|5382_1  96 IYLIRHAESEENV 108
                 9*****9998765 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.8e-07
   TIGR00249  17 sDkeRqLtkkGkdeaervaqwLkkag.........veldrilvSplvRAeqta 60 
                  D++ +L++ Gk +++ + q L+ ++         +++d i +SplvRA +t 
  MMETSP1061-20121228|5382_1 144 GDTDSHLSEGGKRQVTELHQILETERrttltgsviNDVDVIAHSPLVRARETC 196
                 59999******************99999******99***************96 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0    0.0057        12       1      18 [.      96     112 ..      96     124 .. 0.79
   2 !    5.0   0.0    0.0016       3.3      18      58 ..     144     195 ..     136     199 .. 0.75
   3 !    3.3   0.0    0.0051        11     119     157 ..     235     274 ..     226     292 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0057
   TIGR03162   1 lyLiRHgevevnkgkcYG 18 
                 +yLiRH+e e n + + G
  MMETSP1061-20121228|5382_1  96 IYLIRHAESEENVKMH-G 112
                 79*******9887764.5 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0016
   TIGR03162  18 GqtDvpLaekgeeqaaalrekl...........edvkfdavvsSplsRcrel 58 
                 G tD  L+e g++q+ +l++ l              ++d +  Spl R+re+
  MMETSP1061-20121228|5382_1 144 GDTDSHLSEGGKRQVTELHQILeterrttltgsVINDVDVIAHSPLVRARET 195
                 89999**********9999999666665555433345667788888888876 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.0051
   TIGR03162 119 dfsqRveefleelake.ekenvlivtHgGvirallahllg 157
                 ++++R++e+ + + ++ e+ ++++v+H+  + +ll   + 
  MMETSP1061-20121228|5382_1 235 TVHKRIAELYDWIDAQtEASTIALVGHSEYFMILLGISRA 274
                 6899*********9999**********9988877654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1634.63
//
Query:       MMETSP1061-20121228|5385_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|5384_1  [L=1580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.64u 0.13s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 4344.64
//
Query:       MMETSP1061-20121228|5388_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|5389_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 413.97
//
Query:       MMETSP1061-20121228|5387_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-13   48.1   0.0    6.6e-13   47.0   0.0    1.6  1  TIGR01685 MDP-1: magnesium-dependent phosphatase-1
    1.1e-11   43.5   0.0    2.2e-11   42.5   0.0    1.5  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
    1.4e-06   26.0   0.1      1e-05   23.2   0.1    2.4  2  TIGR02381 cspD: cold shock domain protein CspD
    3.7e-06   23.3   0.1    5.2e-06   22.8   0.1    1.1  1  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
  ------ inclusion threshold ------
      0.028   12.4   1.6       0.53    8.3   0.1    2.6  2  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
      0.077   10.6   4.5        1.6    6.3   0.1    3.0  3  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase


Domain annotation for each model (and alignments):
>> TIGR01685  MDP-1: magnesium-dependent phosphatase-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   9.6e-16   6.6e-13       1     172 [.      74     234 ..      74     236 .. 0.78

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 9.6e-16
   TIGR01685   1 lpkvivfDlDgTlWdhynisllkgPfKpvksensiiidkeGaeltlikevrdvLqslkd.......agvilaiasrndvpevareiLkifkikyaGkvvPlaelFdelvekekpsKakqleeilkklkkkspvelkpkeilfiDdrsv....nvrevekygvkvkyvesge.dkksfkkilekl 172
                 +p +ivfDlD+TlW+++ ++l k    + ++ +        ++++l++   ++Lq++++        +++ aiasr++  e+a+++L+ f i+         + Fd + +     K +++     +lkk s   ++ k++lf+Dd+++    n   v+  gv ++ ++ g+ +   +   l+ +
  MMETSP1061-20121228|5387_1  74 MPSLIVFDLDNTLWTPELYQLRK--LQRNNQFP-----VANKDVKLYPAAFEILQQIRTsennpafVNTKFAIASRTKSGEWAHDLLEQFGIR---------DCFDFVEIFSG-DKKRHF----SNLKKAS--GIDFKDMLFFDDNRDgkygNCEPVSSLGVLSVHCPNGIyEESVWTTALQRY 234
                 799****************9854..23344333.....34467****************99999999**************************.........88885555444.555544....4567777..556789*****9887444466779999999999999872445677777766 PP

>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   3.2e-14   2.2e-11       2     123 ..      77     198 ..      76     202 .. 0.76

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 3.2e-14
   TIGR01681   2 vivfDlDnTLwtdeed......vvkedpiedieltevt.ikeirdvLqelkkn.......GvllalaSknddeevakellkikedYfdvilpkaelfldltigkrlpKskrlveilkklnsvlklksilfvDDlav 123
                 +ivfDlDnTLwt+e +       +++ p   +  ++v+ +++  ++Lq+ +++       ++  a+aS+++  e+a++ll+ +      i+   + f+ ++i     K+ +    lkk    + +k++lf+DD+++
  MMETSP1061-20121228|5387_1  77 LIVFDLDNTLWTPELYqlrklqRNNQFP---VANKDVKlYPAAFEILQQIRTSennpafvNTKFAIASRTKSGEWAHDLLEQFG-----IR---DCFDFVEIF-SGDKKRHFSN-LKKAS-GIDFKDMLFFDDNRD 198
                 7************999998655444444...4444455678888888888888888**************************88.....66...444444444.4466645444.44444.59**********986 PP

>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.5e-08     1e-05       3      63 ..     268     329 ..     267     334 .. 0.81
   2 ?   -1.5   0.0      0.77   5.3e+02      31      44 ..     359     372 ..     344     382 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.5e-08
   TIGR02381   3 iGivkWfnnakGfGfisa.egkdeDifahystiqmDGYrtLkaGqkvqfevvqg.ekGahatk 63 
                 +G+vk+ n  k fGfi   + k +D+f h+s +      ++  G + +f vv +  kG+ a+ 
  MMETSP1061-20121228|5387_1 268 QGVVKYVNKEKRFGFIQYgDRKTKDMFFHFSSLPTVD-VSVDEGDELSFTVVSDrRKGKDAAA 329
                 69**************8637899********997543.5899999999999875257888765 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.77
   TIGR02381  31 ystiqmDGYrtLka 44 
                 ++++  +GY+tL +
  MMETSP1061-20121228|5387_1 359 FAALLSNGYKTLET 372
                 66677789999965 PP

>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.1   7.6e-09   5.2e-06      12      81 ..     262     337 ..     254     349 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 7.6e-09
   TIGR00358  12 ekkekvkGvvka..tekgfgFlrvddddkkdyfippeqlkkv....lhGDlvlaqilskkekerreaevvrilera 81 
                 +++++++Gvvk   +ek fgF++  d + kd+f ++++l +v     +GD + +++ s  +k++  a+ ++il+++
  MMETSP1061-20121228|5387_1 262 DRNKRFQGVVKYvnKEKRFGFIQYGDRKTKDMFFHFSSLPTVdvsvDEGDELSFTVVSDRRKGKDAAANIEILDSS 337
                 7899******97225678*********************985333258************************9876 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.053        36       2      15 ..      78      91 ..      77     115 .. 0.84
   2 ?    8.3   0.1   0.00077      0.53      91     140 ..     153     199 ..     149     203 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.053
   TIGR01509  2 ilFDlDgvLvdtek 15
                i+FDlD++L  +e+
  MMETSP1061-20121228|5387_1 78 IVFDLDNTLWTPEL 91
                89*******87765 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00077
   TIGR01509  91 avrlgledkfdkviddvgsgKPdpdiylqalkklglkpeeclfvdDsaag 140
                 ++++g++d+fd+v +  g +K   + + ++ k++g++ ++ lf+dD+ +g
  MMETSP1061-20121228|5387_1 153 LEQFGIRDCFDFVEIFSGDKK---RHFSNLKKASGIDFKDMLFFDDNRDG 199
                 6799********888444444...4456667999999999******9776 PP

>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.65   4.4e+02      98     122 ..       7      31 ..       5      43 .. 0.86
   2 ?    6.3   0.1    0.0023       1.6       2      21 ..      77      97 ..      76     124 .. 0.71
   3 ?    4.5   0.1    0.0082       5.6     110     166 ..     148     196 ..     133     200 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.65
   TIGR01993  98 qrkiiftNadkahaeralkrLgied 122
                 q+ki+ t a ++h ++ ++ L+i  
  MMETSP1061-20121228|5387_1   7 QHKILHTIAASKHRRQKMNLLSILS 31 
                 679999**************99965 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0023
   TIGR01993  2 vllFDlDntLypss.agifkl 21
                 ++FDlDntL+  + +++ kl
  MMETSP1061-20121228|5387_1 77 LIVFDLDNTLWTPElYQLRKL 97
                589*******95441455544 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0082
   TIGR01993 110 haeralkrLgiedcFdgiidieaanlelilKPspeayekalreagvdpekaifldDs 166
                 +a+  l++ gi dcFd +  +   +++         ++++ +++g+d +  +f+dD 
  MMETSP1061-20121228|5387_1 148 WAHDLLEQFGIRDCFDFVEIFSGDKKR--------HFSNLKKASGIDFKDMLFFDDN 196
                 6788899*********88766554444........7888888888899999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2302.98
//
Query:       MMETSP1061-20121228|5390_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 316.77
//
Query:       MMETSP1061-20121228|5393_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 485.96
//
Query:       MMETSP1061-20121228|5396_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.31
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|5398_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 175.99
//
Query:       MMETSP1061-20121228|5397_1  [L=789]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.43
# Mc/sec: 2421.85
//
Query:       MMETSP1061-20121228|5391_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-12   45.2   0.1    4.6e-12   43.9   0.0    1.7  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
     0.0061   14.5   0.7      0.017   13.0   0.5    1.8  2  TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD
  ------ inclusion threshold ------
       0.86    5.0  33.0       0.99    4.8  21.0    1.6  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   3.4e-15   4.6e-12       5      55 ..      95     140 ..      92     142 .. 0.94

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 3.4e-15
   TIGR01557   5 vWteelhrrFlqAvqklGgedkatPkkIlelmkveklTreqvkSHlQkyrl 55 
                 +W+ e+h+rFl +++++G +++   kkI  +m++++ + +q++ H+Qky++
  MMETSP1061-20121228|5391_1  95 RWSAEEHKRFLAGLDQFGTGNW---KKI-TDMVGTR-SCTQIRTHAQKYFI 140
                 7*********************...***.8899999.9************7 PP

>> TIGR01596  cas3_HD: CRISPR-associated endonuclease Cas3-HD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.71   9.6e+02     142     174 ..     127     169 ..      56     170 .. 0.56
   2 !   13.0   0.5   1.3e-05     0.017      44     143 ..     295     424 ..     295     467 .. 0.64

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.71
   TIGR01596 142 l..........lellekllekeepielyllarllagllilaDw 174
                 +          ++++ ++  + +++e++ ++r    +li aD+
  MMETSP1061-20121228|5391_1 127 SctqirthaqkYFIALQKPANDPNNESGGYSRKKSKMLIGADH 169
                 0334444444355555555566666777777777777777776 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 1.3e-05
   TIGR01596  44 KatpaFQkkl......elkeeeegkkkevr............HsllSalllydlleekeleeelalllalaiagHHgrllddddleel..........leleereleealkelreeleelleeeakl.......l 143
                 K ++ FQ++       ++  ++ + +k+v+             s +S+        +++++ e+a+++a++++ HH + +++ +l++           ++  +r++  ++ ++  e++e+ + ++++       l
  MMETSP1061-20121228|5391_1 295 KLSHHFQERSsldqavAEFRKKMEADKKVPaltpssgeitkeSSSASS-----ETLSHKRKLEDAQAVAAVVSMHHDEAQKKLKLQQQqtsdyvaaavQDTIDRKDVLDKLQAAAERQEFMRLRQEVktlnqtiL 424
                 667777777777666644444444444444444444444433333333.....22688999****************8888888888888999999995555555555555555555555555544444342221 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  21.0   0.00073      0.99     659     899 ..     329     562 ..     325     569 .. 0.56

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00073
   TIGR02168 659 rggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleel..erklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreele 899
                 ++g it++s++++s++l+ k+++e++++  + +    +e++k+lk  +++++++  ++ +   + ++   + + +++++e+ rl++ev++l++++ ql+++  + +++ +e+ +++  + +e k+ +e  ++l+ae+++l   ++ +  + +         + +aa    +++   ++++ ++ +l+e e +  + +e++++ +  ++++ +++ el+++le+  ++++++e +l++++++++
  MMETSP1061-20121228|5391_1 329 SSGEITKESSSASSETLSHKRKLEDAQAVAAVVSMHHDEAQKKLKLQQQQTSDYVAAAVQDTIDRKDVldKLQAAAERQEFMRLRQEVKTLNQTILQLQQQSIDSDNRVMEAITDRRVTLNECKNLREINAQLKAELRRLVLLFEHSGGSGTGG-------NPSAA--LMAAATQGANVELMQARLTESELRYHTVTESLSRQTGVLTDQHRAILELNSQLEQERAKRQTVEFELQQIKQQQK 562
                 5789999********************9999999999999999998888888777433333222222222334445555666666666666666666666666666665555555555555555555555555555555555544444333322.......22222..122233334444444445555555555555555555555555555555555555555555444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       419  (0.102145); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 2089.83
//
Query:       MMETSP1061-20121228|5395_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       289  (0.0704534); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 956.92
//
Query:       MMETSP1061-20121228|5399_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 2531.09
//
Query:       MMETSP1061-20121228|5405_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 879.93
//
Query:       MMETSP1061-20121228|5407_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 439.96
//
Query:       MMETSP1061-20121228|5402_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 2282.31
//
Query:       MMETSP1061-20121228|5408_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.55
# Mc/sec: 1480.68
//
Query:       MMETSP1061-20121228|5411_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.24
# Mc/sec: 390.47
//
Query:       MMETSP1061-20121228|5418_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 441.88
//
Query:       MMETSP1061-20121228|5419_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 409.86
//
Query:       MMETSP1061-20121228|5417_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-45  153.8  20.2    1.7e-45  153.4  14.0    1.1  1  TIGR00861 MIP: MIP family channel proteins
  ------ inclusion threshold ------
       0.67    8.4   4.8       0.59    8.6   0.0    3.2  3  TIGR02459 CbtB: cobalt transporter subunit CbtB (proposed)


Domain annotation for each model (and alignments):
>> TIGR00861  MIP: MIP family channel proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.4  14.0   8.3e-49   1.7e-45       1     222 [.      93     326 ..      93     327 .. 0.88

  Alignments for each domain:
  == domain 1    score: 153.4 bits;  conditional E-value: 8.3e-49
   TIGR00861   1 aeflgtlllvffgvgvvlvvnvakavsavgggtllevalafglavallvyavggiSGahlNPAvTlallvlr...kfplkkvvvYivaQliGailgaallylltkkal...egdlavaesaaaGalavfpk.......lssvqalvvefiltaiLvlvilaltdkrealssgglaplaiGllvvlivlslgpltgtamNpARslGpalvaalvgfes....yfwvylvgPivGailgal 222
                 ae++gt+l+vf+g g+v ++  +   s +g   l+++a ++ +av++++ +++ iSGahlNPA+++a++++r   +f + kv++Y ++Q++Gailg+ + ++++++++   e +  ++++aa G+ +  +        +++  a+++e ++taiL +vi+alt++++ + + g+ p +iGl+v   + + +plt ++ NpAR++Gp++va+++g++       w+y+++PivGa++ga 
  MMETSP1061-20121228|5417_1  93 AELIGTFLIVFIGTGAVSSAIFTD--SLLG---LFQIASVWIIAVTIAICTTASISGAHLNPAISIAFAMVRpskSFNWNKVLPYSISQCLGAILGSWMNFIVYSSSIaafEAKTGIVRGAASGIASAKAFgeyfaypVTTATAFLAESVGTAILAFVIFALTHPENDAVKSGFIPPLIGLTVGGLISIFAPLTQAGFNPARDFGPRIVAWFAGWKTvafsNSWLYILAPIVGAVIGAA 326
                 89***************9987655..4444...9***********************************9864448*****************************9999886666666665555433222233555699*************************777777777*******************************************9998889*************986 PP

>> TIGR02459  CbtB: cobalt transporter subunit CbtB (proposed)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.1      0.62   1.3e+03      33      40 ..      13      20 ..       6      23 .. 0.81
   2 ?    8.6   0.0   0.00029      0.59      11      39 ..      79     107 ..      75     116 .. 0.85
   3 ?   -0.6   0.1       0.2   4.1e+02      11      27 ..     229     245 ..     224     250 .. 0.64

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.62
   TIGR02459 33 vyfvGfsh 40
                ++fvG+s 
  MMETSP1061-20121228|5417_1 13 IGFVGLSD 20
                89***996 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00029
   TIGR02459  11 assvsaarlaaaivaalLGaflvyfvGfs 39 
                 +ss+s ++l   ++a l+G+fl+ f+G  
  MMETSP1061-20121228|5417_1  79 SSSSSSKSLVREMLAELIGTFLIVFIGTG 107
                 5778888999999*************965 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.2
   TIGR02459  11 assvsaarlaaaivaal 27 
                 a+   a+++++ai+a++
  MMETSP1061-20121228|5417_1 229 ATAFLAESVGTAILAFV 245
                 44556667777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1642.53
//
Query:       MMETSP1061-20121228|5416_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-07   25.2  58.7     0.0004   16.0  25.3    2.2  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    1.3e-06   24.3  72.4    1.9e-05   20.4  26.9    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0  13.7   6.1e-06     0.012     782     945 ..       8     173 ..       1     189 [. 0.79
   2 !   16.0  25.3   1.9e-07    0.0004     286     526 ..     190     426 ..     161     431 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.1e-06
   TIGR02169 782 ledleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeel.eeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev.keee 945
                  ++ e + + +++ e++ + e l++e+ r++++ ++  a+l++++le++ll+++ + l++  + l +  +  ++  +   ++le +++e  ++l a + +L+ +  +L++e +++  + ++ e +  ++ +++ k+   l+ +++++ea++e  ++  +++ ++e 
  MMETSP1061-20121228|5416_1   8 SNSFELQAKADEWMEVTPKEELLQAELDRLQEAFRKCSAQLERSQLENNLLRDRAASLEHTGASLRASLDGANAGHQTVATELERVKRETsAKLSALESDLSRRTTELEREHSDRATDRKRHEIELGTATTKASKEALALELRTVQAEAQAEAQAQAAQQThEREL 173
                 5677778888899999999999999999999999999999999999999999999999999999999999999999999999999887762566777789999999999999999999999999999999999998888888888888888888777776633333 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.9e-07
   TIGR02169 286 geeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkea.aelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasieGvlG 526
                   e+ ++v+e+ +++k e+e ++ +++e++   ++a  +   + +  + lk++++ l  ++ + + + e+ +++++++k++l+e  a  +   ++  + lr el+++   l ++ + +++l+ el+     l++ + e+a lka+l ++e+  +el e++ el+e +++  + l++++ed+++ +++l++  +  +k      +++   +  +a+ +a+e++  ++++ +e   a+i+ +lG
  MMETSP1061-20121228|5416_1 190 FAEDLRRVREQHASTKTELETCRTNLREEQALRQQARTTTGTIAVLAETLKADKARLVAKLSRLQTKLEESEARFESDKAVLREQLATTQTRGATVaESLRSELNDRTDDLTAMGRSHEQLQVELKDAEAGLRESSVEIASLKAHLLALEKGRHELLENQSELEETLEETHEALQRAQEDVHATRNQLEEAMAASAK-----AKAAAACDDSRARTRALEQKLVDQRDSHEETLARIHSILG 426
                 24577889999999999999999999999999999999999999999999999999999999999999999999999999988888888877665514578888888888888888888888777777777777778888888888888888888888888888888888888887777777777777665544333.....3445556666777777777776777766666666666666 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5  31.6   2.2e-06    0.0046     223     486 ..       9     271 ..       2     281 .. 0.62
   2 !   20.4  26.9   9.3e-09   1.9e-05     253     496 ..     192     424 ..     180     457 .. 0.36

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.2e-06
   TIGR02168 223 relelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeis....rleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeel 486
                 ++ el+  ++++ e   + e l++el++++e +++ +a+l++++ e + lr++ ++le + ++l++ l+ ++a  +    +le+ +++++++l++le++l++ +++le++ s++ ++++  +e+e  ++++k++ e+l+ el +    +++  +++++++++ ++ ++e+++++ ++++++    r  ++l ++ e+++ +k+e e+ +++l e +a +++ +++  +     e+l+++++rl+++l++l+ +lee e ++++ ++ l
  MMETSP1061-20121228|5416_1   9 NSFELQAKADEWMEVTPKEELLQAELDRLQEAFRKCSAQLERSQLENNLLRDRAASLEHTGASLRASLDGANAGHQtvatELERVKRETSAKLSALESDLSRRTTELEREHSDRATDRK-RHEIELGTATTKASKEALALELRT----VQAEAQAEAQAQAAQQTHERELRSARATATTHKTAALRFAEDLRRVREQHASTKTELETCRTNLREEQALRQQARTTTGTIAVLAETLKADKARLVAKLSRLQTKLEESEARFESDKAVL 271
                 66778888888999999999999999999999999999999999999999999999999988888888877666551111455555666666666666666666666666665444433.334444444445555555555555....333333333444444444455555555555555555566666666666666666666666666666666666666777777777777777777777777777777777777666555444 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 9.3e-09
   TIGR02168 253 eeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleee..lerleealeeleeeleeaeqalqkaeeelaqlqarlesl 496
                 e+l++ +++ + +++ele+ r++ +e ++  ++++++  +++   ++l++++++l ++l++l+++lee e+   + es+k  l+e+la+ +   ++ ++  esl++       el++ ++ l+++ + +e+l+ e++++e  l++ + e+ +l+a+l +le+ r++l ++++ele+ lee++++l++ qe+++ ++++lee+ ++  ++++ +a    +++ +++eq+l + ++++++  ar++s+
  MMETSP1061-20121228|5416_1 192 EDLRRVREQHASTKTELETCRTNLREEQALRQQARTTTGTIAVLAETLKADKARLVAKLSRLQTKLEESEA---RFESDKAVLREQLATTQ---TRGATVAESLRS-------ELNDRTDDLTAMGRSHEQLQVELKDAEAGLRESSVEIASLKAHLLALEKGRHELLENQSELEETLEETHEALQRAQEDVHATRNQLEEAMAAsaKAKAAAACDDSRARTRALEQKLVDQRDSHEETLARIHSI 424
                 22222222222222233333333333333333333333333333333333333333332222222222221...11111112222222222...111222222222.......3333333333333333333333333333333333333333333333333333333333333333333333444444444444333333332200223333344455555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       503  (0.122623); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.60u 0.15s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 1367.63
//
Query:       MMETSP1061-20121228|5422_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 345.69
//
Query:       MMETSP1061-20121228|5425_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   10.7   0.7       0.03   10.8   0.5    1.0  1  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   7.3e-06      0.03      91     119 ..      28      56 ..      11      61 .] 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.3e-06
   TIGR02372  91 drstetarltfatsGstgtPkPvthswaa 119
                 +  t+t+ +  +ts st+ P+P + + ++
  MMETSP1061-20121228|5425_1  28 ATATPTTSASATTSASTAQPQPQHQPQPQ 56 
                 55679999999************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|5427_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 477.89
//
Query:       MMETSP1061-20121228|5426_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   12.4   0.7      0.058   11.5   0.5    1.3  1  TIGR00264 TIGR00264: alpha-NAC homolog


Domain annotation for each model (and alignments):
>> TIGR00264  TIGR00264: alpha-NAC homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.5   1.4e-05     0.058      61     102 ..     223     265 ..     217     268 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.4e-05
   TIGR00264  61 qitGkakkekveeee.eiseddielvmkqanvskeearralee 102
                 q++G+   e +eeee +i+e+  +l +++a+ ++e+ar a+e+
  MMETSP1061-20121228|5426_1 223 QLAGELATEIMEEEEtDIAEEARRLRVERAKRDRETAREAVEQ 265
                 78899998988877669***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.36
# Mc/sec: 1077.91
//
Query:       MMETSP1061-20121228|5430_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1700.63
//
Query:       MMETSP1061-20121228|5431_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.67    5.3  13.3       0.89    4.9   9.2    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   9.2   0.00022      0.89     934    1003 ..     278     343 ..     265     358 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00022
   TIGR00927  934 eiaddeevkdetgeqelnaenqgeakede.kGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeen 1003
                   ++ ++ v+d +++++++ e+ +e   d+ +  d   +sd   s  ++++++++++e++eeee      e+
  MMETSP1061-20121228|5431_1  278 ARKYENMVEDTDDDANISVEISDEDYGDDvESDDSSSESDYETSSYDDDDDDDDDDEDDEEEE-----REK 343 
                  333444555555555555555554433330333333444444443333333333333333332.....232 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1932.32
//
Query:       MMETSP1061-20121228|5437_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.24
# Mc/sec: 2337.31
//
Query:       MMETSP1061-20121228|5433_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00032   17.6   0.0       0.15    8.9   0.0    2.2  2  TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
     0.0018   14.6   0.1      0.018   11.3   0.0    2.0  2  TIGR01838 PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I


Domain annotation for each model (and alignments):
>> TIGR01836  PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   7.3e-05      0.15     119     168 ..     137     188 ..     124     202 .. 0.81
   2 !    6.5   0.0   0.00039      0.79     116     165 ..     412     465 ..     402     473 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 7.3e-05
   TIGR01836 119 ngyikkavdkikrts..eldkisllGiCqGGtfsliyaaLeedkiknLvtmv 168
                 n+ i++av+ +k+    +  ki ++G+C GGt  l y+  + d + ++v  v
  MMETSP1061-20121228|5433_1 137 NSRIQSAVQVLKDHPlvDNSKIAVIGYCLGGTGVLGYSFANTDTMSDIVGAV 188
                 566889999998875115568*************999999988888777555 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00039
   TIGR01836 116 Dyvngyikkavdkikrtseld..kisllGiCqGGtfsl..iyaaLeedkiknLv 165
                 D  +g ik av+ + +   +d  +i + G+C GGt ++   +a+   +++k +v
  MMETSP1061-20121228|5433_1 412 DLFVGRIKAAVEWLVAHPVVDesNIFMAGYCLGGTGAIdyAFASGIFENVKAVV 465
                 5566778999999988776661157779*****986651166777778888777 PP

>> TIGR01838  PHA_synth_I: poly(R)-hydroxyalkanoic acid synthase, class I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   8.7e-06     0.018     248     310 ..     140     203 ..     119     209 .. 0.74
   2 ?    0.9   0.0     0.013        26     256     274 ..     428     446 ..     403     463 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.7e-06
   TIGR01838 248 viaaleavee..itGekkvnavGyCigGt.llsvalavlaarrekkriksatllttllDfsdaGel 310
                 + +a++++++     ++k+ ++GyC+gGt +l  ++   +   +++ + ++++   l+D++ +G++
  MMETSP1061-20121228|5433_1 140 IQSAVQVLKDhpLVDNSKIAVIGYCLGGTgVLGYSF--ANTDTMSDIVGAVSFHGGLMDWAVEGTV 203
                 556677776622457889***********4444444..45555668899***********999987 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.013
   TIGR01838 256 eeitGekkvnavGyCigGt 274
                 + +  e+++ + GyC+gGt
  MMETSP1061-20121228|5433_1 428 HPVVDESNIFMAGYCLGGT 446
                 45667889999*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.27
# Mc/sec: 2986.86
//
Query:       MMETSP1061-20121228|5438_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-26   91.0   0.0    8.5e-22   75.5   0.0    3.4  3  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
      6e-20   69.6   0.0    2.4e-15   54.4   0.0    3.5  4  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B


Domain annotation for each model (and alignments):
>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.085   1.7e+02      25      75 ..     135     186 ..     120     198 .. 0.73
   2 !   10.7   0.0   2.4e-05     0.049      71     127 ..     222     280 ..     216     287 .. 0.84
   3 !   75.5   0.0   4.1e-25   8.5e-22     140     264 .]     393     543 ..     379     543 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.085
   TIGR00446  25 kktee..egafevkesalsigatpeyllGlyllqeassmlPvlalepeekerv 75 
                 +++ e  +g++     ++++++   + +G ++ +++ss   v++l ++ ++r+
  MMETSP1061-20121228|5438_1 135 VPWLEstWGFY-AIPANFPLSTSLCFRSGRLYGMDVSSGAGVAVLLTNYHDRI 186
                 56654114555.6677899999999**************99999988866665 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 2.4e-05
   TIGR00446  71 ekervlDlaaaPGgkttqisallkneGaivanevsksRvkvLiani..nRlGvlnvavi 127
                  + rvlDl+ +PG k  q++  ++ +  i  n  ++  vkv+  ++  +Rl v +++v 
  MMETSP1061-20121228|5438_1 222 GEVRVLDLCCSPGLKLLQVADFFHQKTRIHSNREDRRTVKVVGVDVskHRLDVCKTIVN 280
                 5679****************************999999999887773367888888775 PP

  == domain 3    score: 75.5 bits;  conditional E-value: 4.1e-25
   TIGR00446 140 k...fDriLlDaPCsgeGvirkdksrkknrs.............eedikeisklqkeLllaaidalkkgGvlvYstCsleveeneevvdyllrkrkdvvev.lalgdealtankakeevkkalrvyPqs.edv........eGFFvaklrk 264
                     fD +L+Da Cs +G  +  k+r+k+ s             ++ + e+  lq++L+ +++ +lk gG+lvYstCsl+ + ne+vv +ll+++ d+ ++ +      +t + + ++  ++ r+yP+  +d+        +GFFvakl k
  MMETSP1061-20121228|5438_1 393 GmdpFDYVLVDAECSTDGSFKHIKERIKESSgghhreentmltdPKKLAELVDLQRNLIASGFRLLKDGGTLVYSTCSLSEDQNENVVRWLLETHADAFLIpVHFPPIQKTEFVTDGSLAGTVRFYPNLlHDAdlptalwgDGFFVAKLGK 543
                 3345**************987666666543212211111111114556677889***********************************************666788889999999***********752332223334448******976 PP

>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.55   1.1e+03     150     191 ..      17      58 ..      13      63 .. 0.72
   2 ?   -0.7   0.0     0.062   1.3e+02     387     430 ..     103     146 ..      93     148 .. 0.82
   3 !   10.3   0.0   2.9e-05     0.059     245     300 ..     222     279 ..     213     300 .. 0.80
   4 !   54.4   0.0   1.2e-18   2.4e-15     309     437 .]     389     545 ..     346     545 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.55
   TIGR00563 150 klkkaaygkaeaesiveannqkPkltLRvnslkasreelldl 191
                 +  ++++  a++e+i+ a   + ++     + +a+ ++l + 
  MMETSP1061-20121228|5438_1  17 QQRDQYPMAAKTEDIISAEVENAPVSTDTAPNRAASVQLSKE 58 
                 567789999999999999888877776666666666665555 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.062
   TIGR00563 387 ikaFlaeledlplekrlpekvsesvssgglqilPhaeegDGFfi 430
                 +k+F  ++   +       + ++ ++s+ lq +P  e++ GF+ 
  MMETSP1061-20121228|5438_1 103 VKKFEDDKSCNECSNDRNGGRNDLKNSVALQSVPWLESTWGFYA 146
                 67777777666777777788899999****************95 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 2.9e-05
   TIGR00563 245 neetilDvCaaPGGktthilelakdqaqvval..DleehrlkrvkenleRLgltiikv 300
                  e  +lD+C  PG k   +++  ++++++ +   D+   ++  v ++++RL++   +v
  MMETSP1061-20121228|5438_1 222 GEVRVLDLCCSPGLKLLQVADFFHQKTRIHSNreDRRTVKVVGVDVSKHRLDVCKTIV 279
                 5668*************************99633666677777888999999875555 PP

  == domain 4    score: 54.4 bits;  conditional E-value: 1.2e-18
   TIGR00563 309 gekeevekfDRiLlDaPCsalGvirR.kPDlk............wlrkeadiaeLvelqkeiLkaiaplvkkgGtLvYstCtllpeeneeqikaFlaeled.l..plekrlpekvsesvssggl....qi.........lPhaeegDGFfiaklkkka 437
                   ++ ++ fD +L+Da Cs+ G  +  k  +k             l  +++ aeLv+lq++++     l+k gGtLvYstC+l  + ne++++  l+ + d +  p+ +  p +++e+v++g l    ++         lP a  gDGFf+akl k+a
  MMETSP1061-20121228|5438_1 389 DARNGMDPFDYVLVDAECSTDGSFKHiKERIKessgghhreentMLTDPKKLAELVDLQRNLIASGFRLLKDGGTLVYSTCSLSEDQNENVVRWLLETHADaFliPV-HFPPIQKTEFVTDGSLagtvRFypnllhdadLPTALWGDGFFVAKLGKRA 545
                 23335669************99875424445433333111111145567789********************************************99*99544443.33556677777777552222332222233337888889**********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 2776.85
//
Query:       MMETSP1061-20121228|5439_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-17   60.2   0.1    8.2e-17   58.8   0.1    1.5  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    3.6e-10   37.1   0.0    4.6e-10   36.7   0.0    1.1  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit
      6e-07   26.5   0.0    9.3e-07   25.9   0.0    1.2  1  TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
      2e-06   25.0   0.0    2.6e-06   24.6   0.0    1.2  1  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit


Domain annotation for each model (and alignments):
>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.1     8e-20   8.2e-17     197     369 ..      24     213 ..      16     216 .. 0.84

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 8e-20
   TIGR03207 197 igqraigrgsiffedvrvsadhllgdegkgfvqvmqgfdfsraliglqvlavaraal.detweyvaereafgkklsafqgvsfpladletqveaarllclrtlwlkd.h..g.......lphts.....eaamckwwapklaydvihqcllshghggydrg.dleqrlrdvlglqigdgtaqimktiiar 369
                  g ra     + f++vrv+a+ ++g+ g+g+   ++ ++  r  i  q l++a+a+l d +  y  er+ fg+++++fqg+ +  a++ t ++aa ll  ++   k+ h  g         h+      +a+m k ++ ++a +   + +   g  g+ ++   e+ +rd     i +gt+++    iar
  MMETSP1061-20121228|5439_1  24 LGLRASSTCPVHFDKVRVPAENVVGTVGEGYKYCIEILNEGRIGIAAQQLGIAKACLyDIALPYTMERHQFGRPVAEFQGMEHQYAQIATEIHAAELLTYNACRWKElHagGssnsnsnSSHADvsfvkQASMAKLYCSQVAEKTASKTIEWLGGIGFTKDlGAEKFYRDCKVGSIYEGTSNMQLQTIAR 213
                 5889999999**********************************************9456789************************************99875554222121111111122212222268999*********9999**9999*99***99889999***99999*****9998888887 PP

>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   4.5e-13   4.6e-10     209     390 ..      30     213 ..       9     216 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 4.5e-13
   TIGR03204 209 evnevffddvevplenlvgeenkgwdyakfllgnertgia..rvgvskerirrik.elaakvesggkpviedakfreklaaveielkaleltqlrvvadegkhgkgkpnpassvlkikgseiqqat.tellmevigpfaapydvhgddgsneamdwtaqiapsyfnnrkv.siyggsneiqrniiak 390
                     v fd v vp en+vg    g+ y+  +l + r gia  ++g++k  +  i    + + +  g+pv e + + ++ a +  e++a el        +  h  g  n  s   +   s ++qa+ ++l    +   +a   +    g   + d  a+    ++ + kv siy g+ ++q + ia+
  MMETSP1061-20121228|5439_1  30 STCPVHFDKVRVPAENVVGTVGEGYKYCIEILNEGRIGIAaqQLGIAKACLYDIAlPYTMERHQFGRPVAEFQGMEHQYAQIATEIHAAELLTYNACRWKELHAGGSSNSNSNSSHADVSFVKQASmAKLYCSQVAEKTASKTIEWLGGIGFTKDLGAE---KFYRDCKVgSIYEGTSNMQLQTIAR 213
                 456799*********************************95568*******99972466777889******************************999999***********999999***99987246777778888888888777776666666553...5666666658999999998888775 PP

>> TIGR04022  sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   9.1e-10   9.3e-07     190     363 ..      22     198 ..       8     203 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 9.1e-10
   TIGR04022 190 sgfGqrttasGtvlldevrveaeevvpvq.kafdrptlagpvaqliqaaidvGiaraaledt.lafvrekarpwidsgvekasdDpltiaevgelairleaaealleragea..vdaaaaepteesvaaasi....avaeakvltteialeaaskLfelaGtrstlaelnldRhWRnaRtht 363
                 + +G r+ +   v +d+vrv+ae+vv +  + ++    +     +  aa ++Gia+a l d  l +  e+    +   v+   +   + ++ +++a++++aae l  +a +   + a  ++ ++++ ++a +    + + ak++ +++a + ask +e  G  + +++l+ ++++R+ ++  
  MMETSP1061-20121228|5439_1  22 HKLGLRASSTCPVHFDKVRVPAENVVGTVgEGYKYCIEILNEGRIGIAAQQLGIAKACLYDIaLPYTMERH--QFGRPVA---EFQGMEHQYAQIATEIHAAELLTYNACRWkeLHAGGSSNSNSNSSHADVsfvkQASMAKLYCSQVAEKTASKTIEWLGGIGFTKDLGAEKFYRDCKVGS 198
                 56899999999***************765277888888888999***************996145655543..3333333...22334578899***************98611555555556666777776222224569***********************************998865 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   2.6e-09   2.6e-06     208     348 ..      33     187 ..      11     212 .. 0.70

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 2.6e-09
   TIGR03203 208 ditltgvevgadaaigdpenaleliervvddarvalcaeavglmdeslk.ttveyiktrkqfgvaigsfqvlqhraadmfvaveqarsmalfatmaadf........ddakerana.....iaaakvqigkslkfvgqqsiqlhggigmtmeaki 348
                  + +  v+v a+  +g   ++ +    ++++ r+ ++a+ +g+    l   ++ y   r+qfg ++  fq ++h+ a++   +  a  ++  a   +++        +     a+       + ak+   +       ++i+  ggig+t +   
  MMETSP1061-20121228|5439_1  33 PVHFDKVRVPAENVVGTVGEGYKYCIEILNEGRIGIAAQQLGIAKACLYdIALPYTMERHQFGRPVAEFQGMEHQYAQIATEIHAAELLTYNACRWKELhaggssnsNSNSSHADVsfvkqASMAKLYCSQVAEKTASKTIEWLGGIGFTKDLGA 187
                 478999***************************************999625789********************999887666655555544443333300000000333333322111112345666666666666677777777777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1090.13
//
Query:       MMETSP1061-20121228|5441_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1213.28
//
Query:       MMETSP1061-20121228|5436_1  [L=1276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.14s 00:00:00.68 Elapsed: 00:00:00.52
# Mc/sec: 3238.81
//
Query:       MMETSP1061-20121228|5446_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-50  168.3   7.2    4.9e-48  161.6   5.0    2.1  1  TIGR02475 CobW: cobalamin biosynthesis protein CobW
    3.6e-08   31.0   1.5    0.00012   19.4   0.1    2.2  2  TIGR00073 hypB: hydrogenase accessory protein HypB
    7.5e-05   20.4   1.9      0.025   12.2   0.1    2.3  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0012   16.7   0.1     0.0036   15.2   0.1    1.9  1  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
     0.0013   16.0   4.0     0.0061   13.8   0.8    2.1  2  TIGR00436 era: GTP-binding protein Era
      0.002   15.2   0.0     0.0041   14.2   0.0    1.4  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
     0.0086   13.3   0.0      0.018   12.3   0.0    1.4  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
  ------ inclusion threshold ------
      0.016   12.2   0.0      0.062   10.2   0.0    1.9  2  TIGR00750 lao: LAO/AO transport system ATPase
      0.025   12.1   0.2        0.2    9.2   0.1    2.1  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.026   12.2   0.1      0.054   11.2   0.1    1.5  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
      0.052    9.5   1.1       0.87    5.5   0.1    2.0  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
       0.09    9.6   2.2       0.94    6.2   0.4    2.7  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   5.0   1.4e-50   4.9e-48       3     304 ..      29     311 ..      27     321 .. 0.86

  Alignments for each domain:
  == domain 1    score: 161.6 bits;  conditional E-value: 1.4e-50
   TIGR02475   3 kipvtvvtGflGaGkttlirhllena.eGkriavivnefGdlGidGeilkacgieacseeeivelanGcicctvaddflptlekllareeeldhilietsGlalpkplvqafqw.peirsrvtvdgvvavvdsaavaaGrfaedldaleaqraadenldhespleelfedqlacadlvilnkadlldaaglekvraeiaeelpravkiveaeeGevda.evllGlgaaaeedlearkshhdleeeeeehdhd.efdsvvvdlgevadvdalaerleklveee..dvlrikGfvevegkplrllvqavG 304
                 k  +t++tGflGaGkttl++h+l n  +G r+a+i nefG++G+d  ++ +       eee++e+ nGc+cctv  d+l +l+kl + + + dh+liet+Gla p p+ q+f    +++++  +d++++vvd++ v      e+++ +e++                  +q+a ad ++lnk dl++ +++e+v +ei+ +++   +i e+e+ +vd+ + +l +ga         +   d+ ++e eh+hd  + sv +++    d+++l+  l  l++ +  d++r kG + ++g   r++ q+v 
  MMETSP1061-20121228|5446_1  29 KTSCTILTGFLGAGKTTLLNHILRNKdHGLRVAIIENEFGEVGVDDALVIET------EEEVFEMNNGCVCCTVRGDLLRILDKLAKSDARFDHVLIETTGLADPAPVAQTFFVdEDVKQHYELDAILTVVDAKHVLPHLREEKPEGVENE----------------TVEQVAFADRILLNKIDLVTEEEKEEVIREIR-KINEFCEIFETEHSRVDSlANILNIGAFD--LARVLQEEEDFLDTEAEHEHDtSVSSVGIEFEGRLDLHKLNSWLTVLLRDHgvDIFRSKGILSIDGSDARFVFQGVH 311
                 789********************997369****************9987665......899*************************************************9866268***************9988665554444444432................2369***************************7.68999***********9624566666543..3333344455556788****736899**********************9985578********************96 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.1   3.6e-07   0.00012      31     120 ..      31     123 ..      22     128 .. 0.76
   2 !   10.5   0.1    0.0002     0.068     156     208 ..     179     229 ..     168     233 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.6e-07
   TIGR00073  31 lvlnllssiGsGktlllekliealkkevkiavieGDli.tkaDaeRlrkagvkaiqintGkeC.hLdaklva..dalkdlelddkdlllienvG 120
                  +  l +  G+Gkt+ll++++ ++++ +++a+ie +      D + + +++ ++ ++n G  C  +  +l+   d+l + +    d +lie  G
  MMETSP1061-20121228|5446_1  31 SCTILTGFLGAGKTTLLNHILRNKDHGLRVAIIENEFGeVGVDDALVIETEEEVFEMNNGCVCcTVRGDLLRilDKLAKSD-ARFDHVLIETTG 123
                 555677889*************************99851456777778889999999999876156667665334444444.344999999876 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.0002
   TIGR00073 156 keadlilinkvdlveavdadvekvkadvkkinPeveiilvsaktgegldelle 208
                 + ad il+nk+dlv   + + e+v+ +++kin   ei++++    ++l ++l+
  MMETSP1061-20121228|5446_1 179 AFADRILLNKIDLVT--EEEKEEVIREIRKINEFCEIFETEHSRVDSLANILN 229
                 679**********97..56789*********************9999999887 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   7.2e-05     0.025       8      27 ..      35      54 ..      28      73 .. 0.84
   2 !    7.4   0.2    0.0022      0.74     116     156 ..     183     225 ..     135     230 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.2e-05
   TIGR00231  8 ivGhvdvGKstLlnsllknk 27
                + G+ ++GK+tLln +l+nk
  MMETSP1061-20121228|5446_1 35 LTGFLGAGKTTLLNHILRNK 54
                459999*************9 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0022
   TIGR00231 116 ilvvnKiDlkd.dlktkvkslfakl.naepiielsaetgknid 156
                 ++ +nKiDl++ + k++v +++ k  +++ i+e++   ++++ 
  MMETSP1061-20121228|5446_1 183 RILLNKIDLVTeEEKEEVIREIRKInEFCEIFETEHSRVDSLA 225
                 6789*******97777776666655156667777766555544 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.1e-05    0.0036       5      96 ..      36     120 ..      33     177 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-05
   TIGR00176   5 vgykdsGKTtlieklvkelkargyrVatiKHdaheidldkegkDsarhreaGAeevivasserlavmtetqeeldLekllkrlad....lDivLvE 96 
                 +g+ + GKTtl+++++++ k++g+rVa+i       ++ + g+D a + e   ee ++  ++ ++++t +    dL  +l++la+    +D vL+E
  MMETSP1061-20121228|5446_1  36 TGFLGAGKTTLLNHILRN-KDHGLRVAIIEN-----EFGEVGVDDALVIET--EEEVFEMNNGCVCCTVR---GDLLRILDKLAKsdarFDHVLIE 120
                 688899********9987.89********54.....556677777777775..55555555555555443...46666666666555578888887 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.046        16       9      24 ..      39      54 ..      33      59 .. 0.84
   2 !   13.8   0.8   1.8e-05    0.0061      49     177 ..     115     248 ..      99     255 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.046
   TIGR00436  9 pnvGKSTLlNkllgqk 24
                  +GK TLlN++l +k
  MMETSP1061-20121228|5446_1 39 LGAGKTTLLNHILRNK 54
                569*********9887 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.8e-05
   TIGR00436  49 qiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknke......dellleklqklkapvvlalnkldnkekdkllelidkeasllefkeiveisalkgenveelkaiveaklregpfyypedyvtd 177
                   ++i+t Gl  +    +++ v e  k   e+d il vvd+++   +      + +  e + ++     + lnk+d  ++++++e i++ +++ ef ei+e++  + + + ++ +i   +l   ++  +ed+++ 
  MMETSP1061-20121228|5446_1 115 DHVLIETTGLADPAPVAQTFFVDEDVKQHYELDAILTVVDAKHVLPHlreekpEGVENETVEQVAFADRILLNKIDLVTEEEKEEVIREIRKINEFCEIFETEHSRVDSLANILNIGAFDLAR-VLQEEEDFLDT 248
                 479999999999999999999999999999***********99754432001234456778888889999*************************************9999999887777754.34455666655 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.2e-05    0.0041     181     223 ..      33      76 ..      27      91 .. 0.80
   2 ?   -3.9   0.0       3.9   1.3e+03     117     148 ..     135     166 ..     133     180 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.2e-05
   TIGR03819 181 llvsGgtGsGkttLLsalLalvaedeRivlveda.aelrpdhph 223
                  +++G  G+GkttLL+ +L + ++  R+ ++e+   e+ +d + 
  MMETSP1061-20121228|5446_1  33 TILTGFLGAGKTTLLNHILRNKDHGLRVAIIENEfGEVGVDDAL 76 
                 5679999************************9742566666555 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.9
   TIGR03819 117 vvDarlpdgvRlhavLppvaaegtllslRvlr 148
                 +vD  + + + l+a+L++v a+  l  lR  +
  MMETSP1061-20121228|5446_1 135 FVDEDVKQHYELDAILTVVDAKHVLPHLREEK 166
                 67888888888888888887776666666555 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   5.2e-05     0.018      46      73 ..      33      59 ..      25      90 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.2e-05
   TIGR03015 46 ilitGevGaGkttlvrnllkkleaekvv 73
                 ++tG +GaGkttl+ ++l+++++  + 
  MMETSP1061-20121228|5446_1 33 TILTGFLGAGKTTLLNHILRNKDH-GLR 59
                689*****************9984.333 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00018     0.062      38      68 ..      34      63 ..      25      68 .. 0.86
   2 ?   -1.9   0.0      0.89     3e+02     125     137 ..     112     124 ..      95     127 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00018
   TIGR00750 38 GltGvPGaGkstlveklieelrrrGlkvavi 68
                 ltG+ GaGk tl++++ ++ + +Gl+va+i
  MMETSP1061-20121228|5446_1 34 ILTGFLGAGKTTLLNHILRN-KDHGLRVAII 63
                58*************98765.789******9 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.89
   TIGR00750 125 aGfDvilvetvGv 137
                 a fD +l+et G 
  MMETSP1061-20121228|5446_1 112 ARFDHVLIETTGL 124
                 459*******996 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.3     1e+02      23      43 ..      35      55 ..      25      59 .. 0.80
   2 ?    9.2   0.1   0.00057       0.2      95     157 ..     140     207 ..     132     233 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.3
   TIGR03598 23 faGrSNvGKSsliNaLtnrkk 43
                ++G   +GK +l+N ++++k 
  MMETSP1061-20121228|5446_1 35 LTGFLGAGKTTLLNHILRNKD 55
                5666679*********99885 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00057
   TIGR03598  95 LekrenLkgvvllvDirhelkelDlelle.....llkeakipvlvvltKaDklkkselkkalkkvkke 157
                 +++  +L +++ +vD++h l +l +e  e     ++++ ++   ++l+K+D ++++e+++ +++++k 
  MMETSP1061-20121228|5446_1 140 VKQHYELDAILTVVDAKHVLPHLREEKPEgveneTVEQVAFADRILLNKIDLVTEEEKEEVIREIRKI 207
                 56778999**********98777666554000115556666778****************99999884 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   0.00016     0.054      23      45 ..      31      53 ..      22      62 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00016
   TIGR00150 23 tvvlLkGdlGaGKttlvkgllkg 45
                   +L+G lGaGKttl+  +l++
  MMETSP1061-20121228|5446_1 31 SCTILTGFLGAGKTTLLNHILRN 53
                56789***********9998876 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0025      0.87     440     458 ..      33      51 ..      26      56 .. 0.90
   2 ?    2.7   0.0     0.018       6.1     537     598 ..     183     249 ..     162     252 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0025
   TIGR00929 440 TlIfGptgsGKTvllnfll 458
                 T+++G  g+GKT+lln +l
  MMETSP1061-20121228|5446_1  33 TILTGFLGAGKTTLLNHIL 51 
                 8999************987 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.018
   TIGR00929 537 nalssaidslyeek.....klirslselvnflekdeiesladrLerwlkggdyg..wlFdnesdsLdls 598
                 ++l ++id + ee+     ++ir++ e+ +++e ++++  +d+L++ l+ g+    +++ +e+d Ld +
  MMETSP1061-20121228|5446_1 183 RILLNKIDLVTEEEkeeviREIRKINEFCEIFETEHSR--VDSLANILNIGAFDlaRVLQEEEDFLDTE 249
                 457799999999999999999*****************..89999999988766668888888888765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0       0.1        35      11      24 ..      41      54 ..      28      68 .. 0.68
   2 ?    6.2   0.4    0.0027      0.94     285     321 ..     178     213 ..     112     219 .. 0.62

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.1
   TIGR03594 11 VGKStLfNrlvkkr 24
                 GK tL+N +++++
  MMETSP1061-20121228|5446_1 41 AGKTTLLNHILRNK 54
                35555555555554 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0027
   TIGR03594 285 egkalvivvNKwDlvkdekeleelkkeleeklkflkf 321
                    a  i++NK+Dlv +e+e+ee+ +e+++  +f++ 
  MMETSP1061-20121228|5446_1 178 VAFADRILLNKIDLV-TEEEKEEVIREIRKINEFCEI 213
                 333445999******.999999999999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       273  (0.0665529); expected 82.0 (0.02)
Passed bias filter:                      198  (0.0482691); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.50
# Mc/sec: 1079.67
//
Query:       MMETSP1061-20121228|5449_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1067.91
//
Query:       MMETSP1061-20121228|5452_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 773.08
//
Query:       MMETSP1061-20121228|5448_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2592.64
//
Query:       MMETSP1061-20121228|5450_1  [L=825]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.12s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 3111.17
//
Query:       MMETSP1061-20121228|5454_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 2674.00
//
Query:       MMETSP1061-20121228|5456_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    8.6   3.0       0.13    8.4   2.1    1.1  1  TIGR00811 sit: silicon transporter
        3.5    3.0   7.7        4.6    2.6   5.4    1.1  1  TIGR00845 caca: sodium/calcium exchanger 1


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.1   6.2e-05      0.13     473     542 ..     148     219 ..      80     226 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 6.2e-05
   TIGR00811 473 nls.vketfsvrrerilknikelkelleeassdeekaaf.eaalalevkaldklneeeeeeadlkkevedve 542
                 +l  v+et+s+ +er lk+i+  k+  +    +++k+a+ e+  +  + + d+l  ++ ++ + +++v+ + 
  MMETSP1061-20121228|5456_1 148 QLDrVEETLSKSQERRLKEIQRQKKEHNRQEQKAKKKAYlEQQAEKHMTSYDRLHVDNAHKMTSTNDVQATG 219
                 455589**************9988888877666666665388888899999999999988888887777664 PP

>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   5.4    0.0022       4.6     291     382 ..     125     216 ..     104     231 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0022
   TIGR00845 291 klvesevendgvevkeldearrelieilkelkqkhPdkdleqleelaeyev.lsrqqksrafyriqatrklvGaGnilkkkaakaarkavevk 382
                 ++   +v++d+  vk+l++ar e ++ ++e   k  ++ l++++++ +++   +++ k +a+   qa ++++    + +  +a++ +++ +v+
  MMETSP1061-20121228|5456_1 125 NVRRIRVKKDNFRVKKLEKARTEQLDRVEETLSKSQERRLKEIQRQKKEHNrQEQKAKKKAYLEQQAEKHMTSYDRL-HVDNAHKMTSTNDVQ 216
                 556667778999*******************************99987665156778999***********976543.333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       568  (0.138469); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 956.92
//
Query:       MMETSP1061-20121228|5460_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 497.96
//
Query:       MMETSP1061-20121228|5459_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1837.29
//
Query:       MMETSP1061-20121228|5457_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 2141.63
//
Query:       MMETSP1061-20121228|5462_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 590.81
//
Query:       MMETSP1061-20121228|5465_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|5468_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 562.69
//
Query:       MMETSP1061-20121228|5467_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       342  (0.083374); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 3027.50
//
Query:       MMETSP1061-20121228|5461_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.22
# Mc/sec: 2513.79
//
Query:       MMETSP1061-20121228|5471_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35    6.9   4.7       0.49    6.5   3.3    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.3   0.00012      0.49     140     297 ..      19     180 ..      12     255 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00012
   TIGR00934 140 rdssrrnf.klrrtktllereledrtetkvrtrtqvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesis..slrfd.eskekkkstrvpsekfakrresrdidpedlyrsimmlqek...heatakirdk..iseanslaaesdeesses 297
                    ++ n+   rr+++  e e+e    +  r+r     + ++++ + ++e+ f+ +  ++de+++ h d++++  ++ ++++e +   s  f  + +e ++ +++   + ++r ++++i  +++    +  q+k    +  a+ r k   + + s+ ++s ++ss +
  MMETSP1061-20121228|5471_1  19 APRAKMNQqRSRRYRSGGEGEIETTIYEAHRAR-----QDEKERLRRMEEEGFEDHHHHHDEDEDGHDDEDNQHRNNAMVKEELLYdgSYSFVlDHHEGNRIAGSYNTNGMNREDEENIMQKKVGGNGKSSQSKggdLQEVARGRFKgkFETQSSSSSSSSSSSSTT 180
                 555555543455555556666666544444444.....455666677778888888888888888888777777776666666555663333312333344455556666777777777777765443333322100232333333332333333222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 1635.52
//
Query:       MMETSP1061-20121228|5476_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1674.61
//
Query:       MMETSP1061-20121228|5470_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1835.85
//
Query:       MMETSP1061-20121228|5480_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   14.4   0.6     0.0037   14.1   0.4    1.2  1  TIGR01363 strep_his_triad: streptococcal histidine triad protein


Domain annotation for each model (and alignments):
>> TIGR01363  strep_his_triad: streptococcal histidine triad protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.4     9e-07    0.0037     244     316 ..      92     168 ..      54     193 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 9e-07
   TIGR01363 244 drrqgsrkasisdvtpnpaqpalsetndasqsktqrdefkgkdiksllkqlykl..dlserhv..esdGlifdpaqi 316
                     + + a+ +  ++n + p+ ++ ++a    + r++    d ++l++ l     dls+r    e+d +i++p+q 
  MMETSP1061-20121228|5480_1  92 SEAMNVDAAAAAAAAANDGTPSRTNRRNAHAHAHARNSLSRSDAQNLIEALVSAmgDLSQREEeeEEDAIIMHPSQS 168
                 33366777888888889999****************99999999999999976434899997522689******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 1104.80
//
Query:       MMETSP1061-20121228|5481_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 505.96
//
Query:       MMETSP1061-20121228|5482_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 399.97
//
Query:       MMETSP1061-20121228|5479_1  [L=877]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-40  137.7   8.4      3e-40  136.7   5.8    1.4  1  TIGR03440 unchr_TIGR03440: TIGR03440 family protein
    5.9e-07   26.9   0.0      2e-06   25.2   0.0    1.8  2  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    8.2e-07   26.4   0.0     0.0012   16.0   0.0    2.2  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    1.1e-05   23.2   0.0    4.7e-05   21.1   0.0    1.8  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    6.8e-05   19.7   0.3      0.043   10.5   0.0    2.9  3  TIGR03525 GldK: gliding motility-associated lipoprotein GldK
    0.00036   17.6   5.2     0.0021   15.1   3.6    2.2  1  TIGR03529 GldK_short: gliding motility-associated lipoprotein GldK
     0.0048   14.1   0.0      0.022   11.9   0.0    2.0  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0096   13.1   0.0      0.017   12.3   0.0    1.3  1  TIGR00477 tehB: tellurite resistance protein TehB
  ------ inclusion threshold ------
      0.033   11.1   0.0      0.051   10.5   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family


Domain annotation for each model (and alignments):
>> TIGR03440  unchr_TIGR03440: TIGR03440 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.7   5.8   6.5e-43     3e-40      62     405 ..     150     560 ..     103     561 .. 0.77

  Alignments for each domain:
  == domain 1    score: 136.7 bits;  conditional E-value: 6.5e-43
   TIGR03440  62 dpafealfnsyyeavGerl..praqrglLsrpslaevlaYraeVdeavlellakad.........ddeeaaelve..lglqHEqqhqEllltdlkhllsvnplepaaqae.............aeaaasasaeealelpggefelGsdaeg..fafDnErprhrvlleafeldarlVtngeyleFiedgGYeepelWlsdGwawvqeegleaPlyWrre....eeeweeftlgglepldedepvlhvsyyEAdAyarwagar..LPteaeWekaara.............................geaepnaaeanll.................apvgaepagaegleqllgdvWeWtasayepYpgFkpleGavgeyngkfm.snqqvLrGgsvatpaehlrasyRnfflPerrwqfaGlRl 405
                 ++ ++a+f+s +e   +++     ++ ++  p++ ev++Yr++V + v++++ +++         + ++ + ++   +g +HE+ h E+  + ++++ ++   ep+ +++               +  + ++++++ +++++++lG+ a+   + +DnE  +++v +++f  +++++tngey +F+++gGY+++e+W +dGwaw+++ +l+ P +W++     ++e + +t+  + p++ d pv   +yyEA+A++ w+ ++   P    + +  +a                             +           +                 +pv + + +++g ++++g+ WeWt+++++p +gF+  + ++++++ + +  ++ ++ Ggs+++    +    R  f P+   q +G+Rl
  MMETSP1061-20121228|5479_1 150 SKPCNAYFESIFEVGVDEMlwDDMHKNDMLWPTVREVHEYRKQVYQVVKDAIMNHPflddsngpvTVDQSHPMWAlfMGYEHERIHLETSSVLFREAPRHLVQEPKNWPPvhpsayndtrsshPVEGVDYPSNKMIPVKSDTVDLGKPANFpsYGWDNEYGERTVGVPDFYASEHMITNGEYYQFVKEGGYRTEEYWCDDGWAWRTHRNLKWPFFWQQVgpagSHEYNLRTIFDVVPMQWDWPV-DCTYYEAKAFCDWKTKKdgSPASRAYRILTEAehhvirhkdsnlkaarndvsadkvmvtsgE-----------DfpaganganlnlafssqNPVDQFAPSHTGHRDTTGNAWEWTEDHFNPLKGFEVHH-VYDDFSTPCFdGKHSMIVGGSFVSTGDEASVFARFHFRPHF-LQHSGFRL 560
                 5555666777766544443113445667779*****************999988877777778774555555555226889*******988877777776666666666677777777776544455567899*************5554335***************************************************************998987788888899999*********9.589**********9875223433333333333444444457777777766666666666642...........04444444444566766566666666669**************************9.********99889999********99999999999999986.56789997 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.4e-09     2e-06      42     106 ..     653     712 ..     645     729 .. 0.83
   2 ?   -2.8   0.0       1.6   7.4e+02     135     172 ..     781     822 ..     761     850 .. 0.63

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4.4e-09
   TIGR02021  42 ekllewlpkdslkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenve 106
                 ++ll+ l+ +  + +kvlD GC  G  s elAk+  +v a D s+++v+ a++ +  e     ++
  MMETSP1061-20121228|5479_1 653 ANLLTSLNPE-RTTNKVLDMGCSVGGSSFELAKSFDHVDAFDFSQNFVNAAKRMQAGET----MK 712
                 5677778766.7889**********************************9987666555....34 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.6
   TIGR02021 135 diakalerlasltk.esvvltfAPktailaal...kaiGelf 172
                 d  k l+ las ++   +v+ + P++ + ++    k++G+++
  MMETSP1061-20121228|5479_1 781 DPVKCLDSLASIVNpGGIVVMVTPFSWLTEFTprsKWLGGFL 822
                 456889999998883457777778765554432226777665 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.7e-06    0.0012      47     107 ..     662     723 ..     636     731 .. 0.81
   2 !    8.0   0.0   0.00076      0.35     113     153 ..     763     803 ..     747     809 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.7e-06
   TIGR01983  47 kleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplk.kieyelksve 107
                 + +  kvlD+Gc  G  s  la++  +v + D s++ +++Ak  ++ + +k k+  e++  e
  MMETSP1061-20121228|5479_1 662 ERTTNKVLDMGCSVGGSSFELAKSFDHVDAFDFSQNFVNAAKRMQAGETMKfKVPIEAELFE 723
                 455789***************************************99999876666655555 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00076
   TIGR01983 113 ekesfDvvlamEvlEHvadleeilkecaellkpggilflst 153
                 +++++D ++++++l   +d+ + l ++a++++pggi+++ t
  MMETSP1061-20121228|5479_1 763 NTTTYDGIIMSNLLCRLPDPVKCLDSLASIVNPGGIVVMVT 803
                 3678*********************************9987 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     1e-07   4.7e-05      22     180 ..     654     854 ..     647     861 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1e-07
   TIGR02072  22 kLlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls................................nvqficgdieklplekks.........fD.livSnlalQWlddlsevlaelarvlkpgGllafstfgketlkElrqlfkqv....ea.hglrflsleelkallkke.fellkleeel 180
                 +Ll  l+    ++++kvLd+Gc  G  + +l+k+f+++   a D+s++  + ak+ +                                 +v+f  gd+++++  ++          +D +i+Snl l  l d+ + l++la++++pgG++++ t  +  l E+    k +    ++    + +s++el+a+++ + f++++ ee++
  MMETSP1061-20121228|5479_1 654 NLLTSLNPE--RTTNKVLDMGCSVGGSSFELAKSFDHV--DAFDFSQNFVNAAKRMQAgetmkfkvpieaelfetvqavvepgvtpevagRVNFFVGDACNIEELEPIkgndgntttYDgIIMSNL-LCRLPDPVKCLDSLASIVNPGGIVVMVTPFS-WLTEFTPRSKWLggflDPvTNEEIRSKDELQAIMEGNgFTKIHEEEMP 854
                 455555554..5678********************999..9***********999998999*****************************99***9998776654444455888999873556666.555899999*************999988765.577887777755777877788889999999999998767666666554 PP

>> TIGR03525  GldK: gliding motility-associated lipoprotein GldK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   9.4e-05     0.043      65      91 ..     310     336 ..     284     340 .. 0.91
   2 !    5.9   0.1    0.0023         1     263     286 ..     391     413 ..     376     434 .. 0.77
   3 ?   -2.8   0.0         1   4.5e+02     288     344 ..     702     760 ..     675     764 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 9.4e-05
   TIGR03525  65 ptktvtvrsfymdeteitnseyrqfve 91 
                   +tv v+ fy  e  itn ey qfv+
  MMETSP1061-20121228|5479_1 310 GERTVGVPDFYASEHMITNGEYYQFVK 336
                 579**********************97 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0023
   TIGR03525 263 ypvvgvtwkqakafanwrtkkknd 286
                 +p v  t+ +akaf++w+tkk  +
  MMETSP1061-20121228|5479_1 391 WP-VDCTYYEAKAFCDWKTKKDGS 413
                 55.467999**********97543 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1
   TIGR03525 288 rkkkgkalvntfrlpteaeweyaargglegatypwggpytk..sdrgcflanfkplrgd 344
                  k+ +     +f++p eae   + +  +e +  p  ++ +      +c + ++ p +g+
  MMETSP1061-20121228|5479_1 702 AKRMQAGETMKFKVPIEAELFETVQAVVEPGVTPEVAGRVNffVGDACNIEELEPIKGN 760
                 23334445678999****99999999999998887655543115667888888888776 PP

>> TIGR03529  GldK_short: gliding motility-associated lipoprotein GldK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   3.6   4.6e-06    0.0021      54     308 ..     283     534 ..     273     563 .. 0.63

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.6e-06
   TIGR03529  54 gmvvvkagtfhmgqadedvaatqinl..nkqitiseffmdktevtnnkyrqflevllegrlatgeelpeeyvleelypdttvwste...fsyhlgdplmeyyfahpafddypv.....vgvdwqaakffcewrtlhlnayraeedlydaprfrlpseaeweyaarggrdv..akypwgspylrnkkgcllanfkpg.rgnyyddgfaytapvasyfpndfglydmagnvaewvldayfeasvaivwdlnpvyedp..nevrkiirggswk 308
                  m++vk+ t  +g+  +  ++   n   ++ + + +f+  +  +tn +y qf+   +eg   t     eey  ++     t    +   f + +g      y     fd  p+     v   + +ak fc+w+t++      +++      +r+ +eae     +   ++  a+    +  +  + g    +f  g  g  ++  f+  +pv++++p   g  d +gn  ew +d +       v  +   +  p  +    +i ggs+ 
  MMETSP1061-20121228|5479_1 283 KMIPVKSDTVDLGKPANFPSYGWDNEygERTVGVPDFYASEHMITNGEYYQFV---KEGGYRT-----EEYWCDDGWAWRTHRNLKwpfFWQQVGPAGSHEYNLRTIFDVVPMqwdwpVDCTYYEAKAFCDWKTKK------DGS-PASRAYRILTEAEHHVIRHKDSNLkaARNDVSADKVMVTSG---EDFPAGaNGANLNLAFSSQNPVDQFAPSHTGHRDTTGNAWEWTEDHFNPLKGFEVHHVYDDFSTPcfDGKHSMIVGGSFV 534
                 68888888888888777666665554125678888999999999999999996...5665555.....444444433333333222010222333333333444555555554333335678899*******9964......444.455679*******9987765554421455555555555555...46766636889999*******************************98765543333333333333444556677777765 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   4.8e-05     0.022      37      85 ..     662     708 ..     650     721 .. 0.80
   2 ?   -1.5   0.0      0.58   2.7e+02     189     211 ..     831     853 ..     826     858 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.8e-05
   TIGR01934  37 eekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek 85 
                 e++++kvlD+ +  G  ++elak+   +v + D+s++ ++ ak+  ++ 
  MMETSP1061-20121228|5479_1 662 ERTTNKVLDMGCSVGGSSFELAKSF-DHVDAFDFSQNFVNAAKRM-QAG 708
                 55899******************99.78**********9988754.333 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.58
   TIGR01934 189 pskeelaallkeagfeevryrsl 211
                  sk+el+a+++  gf++++ +++
  MMETSP1061-20121228|5479_1 831 RSKDELQAIMEGNGFTKIHEEEM 853
                 6799*************988765 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.7e-05     0.017      75     123 ..     666     714 ..     656     731 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.7e-05
   TIGR00477  75 cktldlGcGqGrnslylslaGydvdavdkneasiasveeikekenldlr 123
                  k+ld+Gc  G  s+ l+ +   vda+d +++ + + +++++ e ++++
  MMETSP1061-20121228|5479_1 666 NKVLDMGCSVGGSSFELAKSFDHVDAFDFSQNFVNAAKRMQAGETMKFK 714
                 69****************99999******************99988755 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00011     0.051     102     178 ..     652     725 ..     650     730 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
   TIGR00536 102 vekaleslisqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnllesl 178
                 v + l sl ++ +++++lD+g+  G  +  lA  +   +v+a D s++ ++ a++      ++ +  +i  +l+e +
  MMETSP1061-20121228|5479_1 652 VANLLTSLNPERTTNKVLDMGCSVGGSSFELAKSFD--HVDAFDFSQNFVNAAKRMQAGETMK-FKVPIEAELFETV 725
                 5667899999**************************..9************998744444444.5556677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (877 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.44
# Mc/sec: 2630.78
//
Query:       MMETSP1061-20121228|5483_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1331.89
//
Query:       MMETSP1061-20121228|5488_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 435.56
//
Query:       MMETSP1061-20121228|5487_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 839.45
//
Query:       MMETSP1061-20121228|5485_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-13   48.0   0.0    6.7e-11   39.6   0.1    2.3  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    4.8e-06   24.3   0.0     0.0019   15.9   0.0    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
    8.2e-05   19.9   0.0     0.0018   15.5   0.0    2.7  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    0.00014   18.8   0.0     0.0021   15.0   0.0    2.3  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00015   18.8   0.1    0.00015   18.8   0.1    2.6  3  TIGR00092 TIGR00092: GTP-binding protein YchF
     0.0057   13.6   0.1      0.021   11.7   0.0    1.9  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
  ------ inclusion threshold ------
      0.011   12.4   0.0       0.03   11.0   0.0    1.6  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
      0.012   13.1   0.0      0.052   11.1   0.0    2.0  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.015   11.8   0.1      0.015   11.8   0.1    1.8  2  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.1   1.5e-13   6.7e-11     160     202 ..     328     370 ..     320     377 .. 0.91
   2 !    6.1   0.0    0.0023         1     238     328 ..     484     575 ..     451     576 .. 0.76

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 1.5e-13
   TIGR02729 160 vglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvveve 202
                 v lvG pn+GkS++++++s+a+p++ +YpFtT   +LG vev 
  MMETSP1061-20121228|5485_1 328 VVLVGAPNVGKSSIVRTISSATPEVNNYPFTTRGMTLGHVEVF 370
                 78*************************************9985 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0023
   TIGR02729 238 vllhlidlseedek..dpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeel..ekkvlaisaltkegleellkkllell 328
                  +++++dls    +  + ved  ++++e    ++++ ++p + v++k dl + + + e l++l +e   + +++ +s  ++ g++el +++l++l
  MMETSP1061-20121228|5485_1 484 AVMYVMDLSGLAGEkcSSVEDQLQLRRE---IRQRFPRRPWIDVVSKYDLGTVDGALEELDALIQENdsNYPYIRLSIHEDVGVDELRRQVLRML 575
                 4678888887744312344444444444...4567889************9985555555555444447999****************9998875 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.1e-06    0.0019       5      41 ..     327     362 ..     324     369 .. 0.89
   2 !    6.0   0.0    0.0045         2      92     160 ..     501     569 ..     446     573 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.1e-06
   TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskpgvtrdy 41 
                  +v+vG ++vGKs++   ++  +  ++  +p++tr +
  MMETSP1061-20121228|5485_1 327 AVVLVGAPNVGKSSIVRTISSAT-PEVNNYPFTTRGM 362
                 79*********************.999999***9965 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0045
   TIGR00231  92 dveeglekqtkeiiheakkkgvpiilvvnKiDlkd...dlktkvkslfaklnaepiielsaetgknidklfk 160
                 +ve+ l + ++ei++  +    p i vv+K Dl +   +l++ ++ + ++ ++ p+i+ls+++  ++d+l  
  MMETSP1061-20121228|5485_1 501 SVEDQL-QLRREIRQRFP--RRPWIDVVSKYDLGTvdgALEELDALIQENDSNYPYIRLSIHEDVGVDELRR 569
                 667777.56666776666..789999**********9999999999999999999*********99999875 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.9e-06    0.0018     116     157 ..     323     363 ..     263     370 .. 0.76
   2 ?    0.8   0.0      0.12        55     161     177 ..     444     460 ..     438     515 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.9e-06
   TIGR03596 116 kkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqq 157
                   a  ++ vG PNvGKS+++ ++ +    +v n p  T++ +
  MMETSP1061-20121228|5485_1 323 LDAPAVVLVGAPNVGKSSIVRTI-SSATPEVNNYPFTTRGMT 363
                 44556899**********99765.566779999999999875 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.12
   TIGR03596 161 lskeleLlDtPGilwpk 177
                  s+  +++D+PGil+  
  MMETSP1061-20121228|5485_1 444 FSQLCQVMDSPGILVRP 460
                 5677899*******853 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.6e-06    0.0021       2      44 ..     327     368 ..     283     375 .. 0.77
   2 ?    1.1   0.0     0.076        35      50     157 ..     448     572 ..     435     589 .. 0.60

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.6e-06
   TIGR03594   2 vvaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeae 44 
                  v++vG pNVGKS+++  +  +    v+++p +TR  + g++e
  MMETSP1061-20121228|5485_1 327 AVVLVGAPNVGKSSIVRTIS-SATPEVNNYPFTTRGMTLGHVE 368
                 67888888888888875554.4455577777777776666665 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.076
   TIGR03594  50 filiDTgGl...eeeedelekeireqaelaiee.advilfvvd......areglteeDeeiaklLrksk..kpvilvvNKvdnkkeeaeaaefyslGlge.....vlaiSaehgrgikdLldeil 157
                 ++++D +G+   +e e++  +e++e + +a+++   ++++v+d       ++   e+  ++ + +r++   +p i vv K d  + + +++e+ +l  ++     ++ +S +++ g+++L  ++l
  MMETSP1061-20121228|5485_1 448 CQVMDSPGIlvrPEGEEHKRNEMEELTLAAMTHlPTAVMYVMDlsglagEKCSSVEDQLQLRREIRQRFprRPWIDVVSKYDLGTVDGALEELDALIQENdsnypYIRLSIHEDVGVDELRRQVL 572
                 68899999988777777788899999998887625678888882222211223334444555555555444666666666666655555555544433322222234455555555555555555 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.5     0.095        43     207     264 ..      83     139 ..      49     159 .. 0.70
   2 ?   -1.9   0.0      0.64   2.9e+02     265     352 ..     205     290 ..     161     299 .. 0.56
   3 !   18.8   0.1   3.4e-07   0.00015       7      47 ..     330     369 ..     325     374 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.095
   TIGR00092 207 nvseddlvnkenkllekvkeivaefkegdkvvlvsaeleselselkeeereeflkelg 264
                 n  +++  n  n+ +++  + +++    + vv+ sa +  + se ++ ++++ +++++
  MMETSP1061-20121228|5485_1  83 NHINKNNNNI-NNNINNNNNNINNRLRPNLVVPTSALFSTKGSETSHAQKDSKKSNRQ 139
                 4444444443.5555555666666777889********99999998888877665554 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.64
   TIGR00092 265 leevsglnrviraayklln.Lisff.taGkkevraWtikkGtkapqaagvihtDlekgfikaevikyedlielkseqeakekGllrleGk 352
                 ++    l+ +++  ++ l+ L  f  t+    vra   k G + +   g ih    +  i       e ++++k+ ++ake+   r+eG 
  MMETSP1061-20121228|5485_1 205 QQLCIPLRDIVNGYRRELKrLHPFEaTVADLTVRARIKKDGLTLEVLLGDIHEA--RKMILET--GKEWIYKCKHAETAKEANAARQEGT 290
                 555555666666665555414444224444456666666666666666667653..2333322..2355788888888888888888885 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 3.4e-07
   TIGR00092   7 ivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnv 47 
                 +vG pnvGks + + i  a+  e+ nyPf+t     g v+v
  MMETSP1061-20121228|5485_1 330 LVGAPNVGKSSIVRTISSATP-EVNNYPFTTRGMTLGHVEV 369
                 79**************99998.*********9999999887 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   4.6e-05     0.021     209     247 ..     325     362 ..     307     370 .. 0.81
   2 ?   -2.5   0.0      0.99   4.5e+02     144     166 ..     561     583 ..     555     585 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.6e-05
   TIGR00450 209 glklaivGktNvGKSSLlNallkkdraiVsdikGttRDv 247
                   ++++vG +NvGKSS++  +++     V +++ ttR +
  MMETSP1061-20121228|5485_1 325 APAVVLVGAPNVGKSSIVRTISSAT-PEVNNYPFTTRGM 362
                 4589**************9988765.5588999999976 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.99
   TIGR00450 144 kvkieelrkkllkllaevevniD 166
                 +v ++elr+++l +l ev v +D
  MMETSP1061-20121228|5485_1 561 DVGVDELRRQVLRMLGEVRVVLD 583
                 56789***************999 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.6e-05      0.03     174     228 ..     310     364 ..     305     374 .. 0.84
   2 ?   -2.7   0.0         1   4.7e+02     303     348 ..     520     572 ..     486     575 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.6e-05
   TIGR03156 174 ekqreeqrkkrkksevptvalvGYTNaGKstllnaltkaevlaedklFATLdptt 228
                 + qr+ + +   + ++p v lvG  N GKs++++++ +a+  +++  F+T   t+
  MMETSP1061-20121228|5485_1 310 DLQRSLRSAPAVQLDAPAVVLVGAPNVGKSSIVRTISSATPEVNNYPFTTRGMTL 364
                 5567777777778899***********************9999999999966665 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1
   TIGR03156 303 pvllvlNkidkle.......eeeleeleekkeeavlvsAkkgegleeLleaie 348
                 p + v+ k d+ +        ++l ++++++   + +s +++ g++eL++++ 
  MMETSP1061-20121228|5485_1 520 PWIDVVSKYDLGTvdgaleeLDALIQENDSNYPYIRLSIHEDVGVDELRRQVL 572
                 55666666665554344322122222223334488888888899888888775 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.3   1.5e+03     143     158 ..      92     107 ..      67     128 .. 0.51
   2 ?   11.1   0.0   0.00011     0.052      15      41 ..     322     348 ..     312     368 .. 0.80
   3 ?   -3.6   0.0       3.6   1.7e+03     147     184 ..     533     570 ..     525     571 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.3
   TIGR03598 143 kkselkkalkkvkkel 158
                  +++++++ ++++++l
  MMETSP1061-20121228|5485_1  92 INNNINNNNNNINNRL 107
                 2233333333333333 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00011
   TIGR03598  15 edklpeiafaGrSNvGKSsliNaLtnr 41 
                 + ++p ++++G  NvGKSs++ ++ + 
  MMETSP1061-20121228|5485_1 322 QLDAPAVVLVGAPNVGKSSIVRTISSA 348
                 557899***************998765 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 3.6
   TIGR03598 147 lkkalkkvkkelkkeeekvevllfSslkkegieelkae 184
                 ++ al+++ + +++++++  ++ +S ++  g++el+++
  MMETSP1061-20121228|5485_1 533 VDGALEELDALIQENDSNYPYIRLSIHEDVGVDELRRQ 570
                 55567777788888888889999999999999999876 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.3      0.29   1.3e+02     123     200 ..     106     204 ..      84     244 .. 0.56
   2 ?   11.8   0.1   3.3e-05     0.015       1      29 [.     332     360 ..     332     374 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.29
   TIGR00437 123 kLeerLGvpvvplsatkgrgieelkkaide....................ekaiklvekkkraieilkeaeslaevkeklkelkqkl.kkglevlegll 200
                 +L   L vp   l +tkg ++++++k  ++                     ++   v+  k++    k++  +++v+e++k+++++  k+g e++++l+
  MMETSP1061-20121228|5485_1 106 RLRPNLVVPTSALFSTKGSETSHAQKDSKKsnrqsnagnnpknvrqntggLRRLPVVKGPKEMSDRAKKVAGWTKVDESVKNIRNRArKHGSETINTLM 204
                 444555555555555666666666665555455555555555544444443344444444445555555555555555555555555455555554444 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 3.3e-05
   TIGR00437   1 GnpNvGKstlfnaLtgsnqkvgNwpGvTV 29 
                 G pNvGKs+++  ++ +  +v N+p +T 
  MMETSP1061-20121228|5485_1 332 GAPNVGKSSIVRTISSATPEVNNYPFTTR 360
                 89***********************8775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.31u 0.20s 00:00:00.51 Elapsed: 00:00:00.48
# Mc/sec: 1649.86
//
Query:       MMETSP1061-20121228|5491_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 855.06
//
Query:       MMETSP1061-20121228|5478_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1300.09
//
Query:       MMETSP1061-20121228|5490_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.3   0.0     0.0024   14.8   0.0    1.1  1  TIGR01607 PST-A: Plasmodium subtelomeric family
     0.0086   13.5   0.3        0.4    8.0   0.0    2.1  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
  ------ inclusion threshold ------
      0.042   11.1   0.1        3.7    4.7   0.0    2.4  3  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase


Domain annotation for each model (and alignments):
>> TIGR01607  PST-A: Plasmodium subtelomeric family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.7e-06    0.0024      73     158 ..     114     200 ..     110     235 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.7e-06
   TIGR01607  73 eGysvyaldlqghGesdglenlrghikkfddlvddviqyikk.ikdeiikekkeksddeskdivekkkkrlplyivGlsmGgnialr 158
                  G +vy  d++ghG+s g        ++    vd v+++++k + ++ +   +  ++++  + ++++     +y+ G+s Gg +++ 
  MMETSP1061-20121228|5490_1 114 YGITVYLPDIRGHGKSGGPRGDAPSPEQVWKDVDTVLDFVQKdLAEDATTTATATATTTTTTTTTTTTTTTTVYLGGHSSGGGLVVN 200
                 5889*************987655555555555899999998734555555555556666666666777799***********98875 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00029       0.4      22      78 ..      83     144 ..      78     161 .. 0.79
   2 !    3.5   0.0     0.007       9.5      95     115 ..     183     203 ..     174     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00029
   TIGR01250  22 egekikllvlHGGPgssheyleslkellke..gvevilYDQLGsgkSdqPddsd...ekllt 78 
                  + +  l+  HGG ++s   +++l++ l+   g++v+l D  G gkS  P       e+ ++
  MMETSP1061-20121228|5490_1  83 AEAELALVFYHGGGAHSGAGYQHLADGLASdyGITVYLPDIRGHGKSGGPRGDApspEQVWK 144
                 455788999***************99888779***************999653345566664 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.007
   TIGR01250  95 ldkfyllgqSwGglLaqeYal 115
                  + +yl g+S Gg L+++Ya 
  MMETSP1061-20121228|5490_1 183 TTTVYLGGHSSGGGLVVNYAA 203
                 4679***************96 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.0    0.0027       3.7       4      52 ..      88     138 ..      85     159 .. 0.71
   2 ?    3.9   0.0    0.0047       6.4      49      90 ..     162     203 ..     154     211 .. 0.71
   3 ?   -3.6   0.0      0.97   1.3e+03     191     210 ..     339     358 ..     321     366 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0027
   TIGR03695   4 vlvlLHGf.lgskedwqalieeleekfsv..lalDLpgHGkskslkekeakd 52 
                 +lv+ HG    s++ +q+l++ l++++ +   + D+ gHGks  ++  +a +
  MMETSP1061-20121228|5490_1  88 ALVFYHGGgAHSGAGYQHLADGLASDYGItvYLPDIRGHGKSGGPRG-DAPS 138
                 689999752778999********98876543678*******987754.3333 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0047
   TIGR03695  49 eakdfeeaaqellkelleklkiekviLvGYSlGGRialalal 90 
                 +++++++a++  + + ++  ++++v+L G S GG + +++a+
  MMETSP1061-20121228|5490_1 162 TTTATATATTTTTTTTTTTTTTTTVYLGGHSSGGGLVVNYAA 203
                 33444444444466666677999***********99999986 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 0.97
   TIGR03695 191 lkelklpvlylvGekDekFk 210
                   + + p+ + vG++De F+
  MMETSP1061-20121228|5490_1 339 TVSPEQPMGLWVGSEDELFV 358
                 33446788899999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2045.83
//
Query:       MMETSP1061-20121228|5492_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.20s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 2644.67
//
Query:       MMETSP1061-20121228|5494_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2516.59
//
Query:       MMETSP1061-20121228|5498_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 557.95
//
Query:       MMETSP1061-20121228|5499_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 751.76
//
Query:       MMETSP1061-20121228|5501_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.32    7.4   9.8       0.35    7.3   6.8    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit
       0.84    5.0  16.0          1    4.7  11.1    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   6.8   0.00017      0.35     199     276 ..      66     142 ..      30     183 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00017
   TIGR01651 199 laeelgddeesedeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaet 276
                    ++g ++++++ ++t++ +  +++ e++++ +++gd +s +     ++++++++  +  + ++d+++d+  ed e 
  MMETSP1061-20121228|5501_1  66 ADGNYGGNSNTNKADKTEHSANADHHREDRTGSNGDGDGDSGSGSDSDSDSDSDESAIDWEDGNEDQENDNA-EDQER 142
                 445677776666666666666666666666666666666666655556666666666666555555444433.22221 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  11.1   0.00051         1     939    1003 ..      75     141 ..      64     157 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00051
   TIGR00927  939 eevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeee..eeeeeeeeeeeeeeeeen 1003
                  +  k ++ e+ +na+++ e + + +G  +++ + G ds+ + + +e   + e+ +e++e+++ e+++
  MMETSP1061-20121228|5501_1   75 NTNKADKTEHSANADHHREDRTGSNGDGDGDSGSGSDSDSDSDSDESaiDWEDGNEDQENDNAEDQE 141 
                  4566778889999999999999999988888889999998888888733333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1061.41
//
Query:       MMETSP1061-20121228|5506_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    8.5   3.5       0.17    8.4   2.4    1.0  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   2.4     4e-05      0.17     351     424 ..      26      98 ..       4     112 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 4e-05
   TIGR00860 351 lkkkeegeekrrpaleakelsslelrakkggedleskteeeallksvppseasldlakileevriakrlrkkde 424
                    ++++ ++ +++++  +ls++++  +k+  +l+++++++++ ++++p++a+++  + +e  +++  + +++ 
  MMETSP1061-20121228|5506_1  26 ADSQKQT-QQATDEIDDPSLSTIKIGHHKRYLNLTKNSQQQQQQQQQQPQNARQNHLQQKELKKLRTIIVEEQA 98 
                 3333333.3444777777799999999999999***99999999999999885554444433335555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       539  (0.131399); expected 82.0 (0.02)
Passed bias filter:                      222  (0.0541199); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 683.94
//
Query:       MMETSP1061-20121228|5508_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|5510_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|5507_1  [L=1914]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1914 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.15s 00:00:00.95 Elapsed: 00:00:00.50
# Mc/sec: 5052.54
//
Query:       MMETSP1061-20121228|5512_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 1025.92
//
Query:       MMETSP1061-20121228|5511_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 541.16
//
Query:       MMETSP1061-20121228|5517_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 521.36
//
Query:       MMETSP1061-20121228|5522_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 942.78
//
Query:       MMETSP1061-20121228|5525_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.24
# Mc/sec: 164.99
//
Query:       MMETSP1061-20121228|5524_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 1207.46
//
Query:       MMETSP1061-20121228|5526_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 1183.78
//
Query:       MMETSP1061-20121228|5527_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-06   24.2   0.2    3.3e-06   24.2   0.2    1.9  2  TIGR02290 M3_fam_3: oligoendopeptidase, pepF/M3 family
    7.2e-06   22.7   0.9     0.0087   12.5   1.2    2.6  2  TIGR02289 M3_not_pepF: oligoendopeptidase, M3 family
    1.8e-05   21.6   0.4    4.1e-05   20.5   0.3    1.5  1  TIGR00181 pepF: oligoendopeptidase F


Domain annotation for each model (and alignments):
>> TIGR02290  M3_fam_3: oligoendopeptidase, pepF/M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.11   1.5e+02      42     155 ..     134     245 ..     108     270 .. 0.63
   2 !   24.2   0.2   2.4e-09   3.3e-06     372     561 ..     591     792 ..     589     796 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.11
   TIGR02290  42 dakekeklekalkklealsellskvrayaslllsadtedeeakklls...elealsselqqallffelelaklsdeeiaelledeelaeyrfllkearkeakkklseeeEkliaels 155
                 d  ++++  + l +l+++s+ + +v   a+l  sa  + +  +++ +   el+ ++++l++   ++ ++la ++d+ +++l e+e   +  fllk++ +    +l e+e + +++l+
  MMETSP1061-20121228|5527_1 134 D--STSQARDTLYQLDQISRTVCNVIDAAELCRSAHADPQWREAANQsfaELQDYIATLNAD-RRLYDALALVEDHFLDDLSEEE--RRFCFLLKREFELDGIHLPEHEREHVKQLH 245
                 4..34578888999999999999999999998888766544444444000444444444444.4555677778887777776544..456677777777777777777766666664 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 2.4e-09
   TIGR02290 372 slsdvaTLAHELGHavHsellkd..qpllnarypltlAETASvFaEtl.....ladallkeakteeeklslLaekledaiatlv....rivarflFEkrfyearkegelsaeelkeLmleaqkesygdalkeselhpylWayklHFihad..FYnypYa..FGeLlvlglyakykeegesFvekYialLrdtgsktaeelvkk.lg 561
                 s ++v T  HE+GHa+Hs l +   q +  +r+++   ET S   E+      +  +l ++a+ e    s+ ++  ++  ++ +    +++++ +F + ++  r+++       k+++    ++s g   +e     ++ ++++H + +   +Y y Y+  F++ + + l++k   + +s ++ ++++L ++g+ +a++++++ lg
  MMETSP1061-20121228|5527_1 591 SHQEVETFFHEFGHAMHSLLSRTnfQHMSGTRAAMDFVETPSHWMEHYawceqFLPHLATNANGEPLPASMAKQLSQSRSQFRFlemqKQIVLSNFDQTIFGPRQSNGGPRPATKDVWTAMHRQS-GVPFAEG---THWFTNIGHLVTYGagYYGYLYSqvFADAIWNELFRKQSLNRNSGERIWKKMLIHGGARDANTMLEDlLG 792
                 5689****************99744789999************999862211123344555555434444444444444454332333899*****************999999**998777765.4444443...68889*****999977877777544777777777777777888999999999999999999998887555 PP

>> TIGR02289  M3_not_pepF: oligoendopeptidase, M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0   0.00042      0.58     177     260 ..     350     434 ..     336     482 .. 0.71
   2 !   12.5   1.2   6.3e-06    0.0087     334     382 ..     591     640 ..     582     650 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00042
   TIGR02289 177 eeldriydeLvkvRtkiAknlgfeNyvdlayklleRtdYsaedvakyresvlkyvvPlltk...lrkrkkkrl.gieklrpyDesaef 260
                 e+l  ++d +++ R+  A +lgfe y     +   ++  s+  v ++ ++++ ++ P + +   + +r k+++ g  +++p+D+++  
  MMETSP1061-20121228|5527_1 350 ENL-DVLDAMIDARHTLATTLGFESYAHRFLQD--KMVGSPGSVSEFLNDLQGKIRPAYLQelgILSRAKQQFeGSPEIEPWDVNFYV 434
                 444.489******************98644333..33468888888888888888887654222233333333145578888887754 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 6.3e-06
   TIGR02289 334 tsgdidvliHEvGHafqvyeslk.qllpeyrwltaeaaElaSmslEllsl 382
                 +++++++++HE GHa+++  s+  ++ +      ++  E  S  +E  ++
  MMETSP1061-20121228|5527_1 591 SHQEVETFFHEFGHAMHSLLSRTnFQHMSGTRAAMDFVETPSHWMEHYAW 640
                 5689**************9999989999999999*******999997654 PP

>> TIGR00181  pepF: oligoendopeptidase F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.3     3e-08   4.1e-05     376     421 ..     593     639 ..     589     700 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3e-08
   TIGR00181 376 ndvftLvHElGHsvhslfsske.qpyslseysiflaEvaStfNelll 421
                 ++v t  HE+GH++hsl+s+ + q  s  ++ + ++E +S   e++ 
  MMETSP1061-20121228|5527_1 593 QEVETFFHEFGHAMHSLLSRTNfQHMSGTRAAMDFVETPSHWMEHYA 639
                 7899***************9875778889999********9888763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 2846.68
//
Query:       MMETSP1061-20121228|5529_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2314.52
//
Query:       MMETSP1061-20121228|5521_1  [L=1549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1404.5   0.5   2.3e-253  841.1   0.1    2.0  2  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   1.6e-129  429.8   0.0   5.2e-129  428.1   0.0    1.8  2  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    2.9e-17   60.4   0.1    2.5e-10   37.6   0.0    2.2  2  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    4.2e-17   58.8   1.3    6.8e-11   38.2   0.1    2.1  2  TIGR01235 pyruv_carbox: pyruvate carboxylase
    2.9e-15   53.9   0.5    1.2e-07   28.8   0.0    2.2  2  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    3.1e-15   53.8   0.2    6.8e-07   26.4   0.0    2.5  3  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    3.3e-11   41.1   0.0    8.1e-11   39.9   0.0    1.6  1  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
      9e-11   38.5   0.0    1.5e-10   37.8   0.0    1.2  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
    5.7e-10   35.3   0.0    8.9e-06   21.5   0.0    2.1  2  TIGR02712 urea_carbox: urea carboxylase
    1.2e-09   35.7   0.0      1e-05   22.8   0.0    2.7  2  TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
    2.7e-09   34.5   0.1    1.4e-07   28.9   0.0    3.1  2  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    6.9e-09   33.0   0.0     0.0002   18.4   0.0    2.6  2  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
    1.6e-08   32.0   0.0    2.3e-06   25.0   0.0    2.5  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    3.9e-08   30.3   0.4    0.00019   18.2   0.0    2.2  2  TIGR00877 purD: phosphoribosylamine--glycine ligase
    4.6e-07   26.0   0.0    9.2e-07   25.0   0.0    1.4  1  TIGR01815 TrpE-clade3: anthranilate synthase
    4.1e-06   22.9   0.1     0.0052   12.6   0.0    2.2  2  TIGR02068 cya_phycin_syn: cyanophycin synthetase
      0.005   14.5   0.0       0.61    7.7   0.0    2.7  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit


Domain annotation for each model (and alignments):
>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  841.1   0.1  9.4e-256  2.3e-253       2     553 ..     405     966 ..     404     972 .. 0.96
   2 !  561.8   0.0  2.1e-171  5.2e-169     545    1051 ..    1005    1518 ..     998    1519 .. 0.94

  Alignments for each domain:
  == domain 1    score: 841.1 bits;  conditional E-value: 9.4e-256
   TIGR01369   2 kredikkvlviGsGpivigqAaEFDYsGsqalkalkeegievvLvnsniAtvmtdee......ladkvYiePltveavekiiekErpDailltlGGqtaLnlaveleekGvLekygvkllGtkveaikkaedRekFkealkeineevakseivesveealeaaeeigyPvivRaaftlgGtGsgiaeneeelkelvekalkaspikqvlvekslagwkEiEyEvvRDskdnciivcniEnlDplGvHtGdsivvaPsqtLtdkeyqllRdaslkiirelgvegecnvqfaldPeskryvviEvnpRvsRssALAskAtGyPiAkvaaklavGysLdelkndvtketvAsfEPslDYvvvkiPrwdldkfekvdrklgtqmksvGEvmaigrtfeealqkalrsleekllglklkeke.aesdeeleealkkpndrRlfaiaealrrgvsveevyeltkidrffleklkklvelekeleee.....klkelkkellkkakklGfsdeqiaklvkvseaevrklrkelgivpvvkrvDtvaaEfeaktpYlYstyeeekddvevte 553
                 +r++ kkvl++GsG+++igqA+EFDYsGsq++kalkee+iev+L+n+niAtv+t++e      +ad+vY++P+ +++v  ii+kE+pD+i++++GGqtaLn++vel ++G L+k gv++lGt++ +i+ +edRe F+e+lkei+e +a s  +++v+ a eaa++igyPv++Raa++lgG Gsg+a n eel+++++ka+++s  +q+l+++ l gwkE+EyEvvRD+ dnci+vcn+En+DplG+HtGdsivvaPsqtLt++ey +lR ++lk++r+lg++gecn+q+al+Pes+ry +iEvn+R+sRssALAskAtGyP+A+va+kl++G +L ++kn++tk+t+A+fEPslDY+v k+Prwdl+kf++v++klg++m svGEvmaigrtfee +qka r+++ +l gl+ ++++ + +d +le+ l+ p+d+Rlfa+  al rg s+e+++ ltkid +fl+kl+++  + k+ ++       +ke +++ l+ +k  Gfsd+qiak v++ e+evr+lrk+ g+vpvvk++Dt+aaEf+a+t+YlY ty+++kddv++ e
  MMETSP1061-20121228|5521_1 405 QRKTYKKVLLVGSGGLSIGQAGEFDYSGSQCIKALKEEDIEVILINPNIATVQTSQEkeeasrMADRVYFLPIRPHVVMDIIRKEKPDGIIVSMGGQTALNVGVELWRSGELQKAGVEILGTQIPVIEATEDREIFSEKLKEIGETIALSYSATDVASAKEAANKIGYPVLIRAAYALGGLGSGFAANDEELEAMAAKAFTTS--DQILIDQDLRGWKELEYEVVRDNSDNCITVCNMENFDPLGIHTGDSIVVAPSQTLTNREYFMLRRTALKVVRHLGIVGECNIQYALNPESERYCIIEVNARLSRSSALASKATGYPLAYVATKLSLGKNLVQIKNSITKTTTACFEPSLDYCVLKMPRWDLKKFNRVSNKLGSSMLSVGEVMAIGRTFEEVIQKACRMVNPNLAGLDGEDSNiVDEDADLEKLLRIPTDERLFAVQLALERGWSIEKIFGLTKIDPWFLSKLHNIACMRKACKHAgsldeLVKENPRQRLRALKIAGFSDRQIAKYVGQGEQEVRSLRKRFGVVPVVKQIDTLAAEFPAQTNYLYMTYSGDKDDVDMIE 966
                 57899*************************************************9744445559*******************************************************************************************************************************************..**************************************************************************************************************************************************************************************************************999876155677899999*********************************************99997763322334677889****************************************************************998755 PP

  == domain 2    score: 561.8 bits;  conditional E-value: 2.1e-171
   TIGR01369  545 ekddvevtekkkvlvlGsGpiRigqgvEFDycavhavlalreagyktilinynPEtvstDydiadrLyFeeltvedvldiiekekvegvivqlgGqtalnlakeleeagvkilGtsaesidraEdRekFsklldelgikqpkgkeatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryleeavevskekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniqfvvkdeevyviEvnvRasRtvPfvskalgvplvklavkvllgkkleelekgvkkekksklvavkaavfsfsklagvdvvlgpemkstGEvmgigrdleeallkallaskakikkkg.svll.svkdkdkeellelakklaekg.lkvyategtakvleea.gikaevvlkvseea....ekilellkeeeielvinltsk..kkkaaekgykirreaveykvplvteletaeallea 1051
                  + +++++ +++ v+vlG+G++ ig++vEFD+cav+++++lr+ g+k+i+inynPEtvstDyd+++rLyFeel++e+v+di+e+e++ gv+v++gGq+++nla  l+++g++ilGt+a +i+raEdR +Fs++ld+++i qp++++++s++ea e+ +++ +PvlvRps+vl+G+am++++ e+el+++l+ a +vs +kPv++ k++e a+E++ Dava+ +e+l ++i eH+E+aGvHsGD+t+vlp+qkl  ++ k++k+++++iak+l+++G++niqf++k+++v+viE+n+RasRt+Pfvsk+ ++++++la+k+++  +++  +    +  + ++v vka++fsf++l+g+d+ lg+em+stGEv+++g+d++ea+++all++++k+++++ ++ll + +++++ e+ + + +l+e+g +++y t gta++++e+ +i+++vv+k  +++     ++l+ +k+++i+lvin+++   +k++ ++gy irr++v+++ +lvt++++a  l+++
  MMETSP1061-20121228|5521_1 1005 TVKNMQTAKERGVIVLGCGAYCIGSSVEFDWCAVSCIRQLRRDGFKSIIINYNPETVSTDYDESERLYFEELSLERVMDIYERENPVGVVVSVGGQIPNNLAGPLRDSGANILGTDATDIERAEDRFQFSRMLDNMNIGQPEWSVLKSKDEAIEFSNKVSFPVLVRPSFVLSGAAMRVASTENELRNFLDLAEDVSGDKPVVVTKFVEGAKEIEFDAVANRGEILNYAIGEHLENAGVHSGDATVVLPAQKLYVKTIKHVKRYASSIAKALRITGPFNIQFMAKGNQVQVIECNLRASRTFPFVSKTFNHNFISLATKAMTSVDVQPYKF---SLLDIDYVCVKAPMFSFTRLRGADPSLGVEMASTGEVACFGEDQNEAFMQALLSTTFKLPTNNhTILLsIAASEKRFEFADSVITLQEMGkYTLYGTPGTAEYYKEKyNIDMKVVTKPDDDSddgeGTALHEIKQGNIDLVINISDGtgRKDELTSGYLIRRASVDFGTSLVTNVKCAIELVTC 1518
                  45678888889****************************************************************************************************************************************************************************************************************************************************************************************************************************665...778899**************************************************8877655144440445556679999999999999789*********998653899****9998887677667899************9875114558899*********************9998887 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.1   0.0  2.2e-131  5.2e-129       1     357 [.      19     387 ..      19     390 .. 0.92
   2 ?   -2.1   0.0       1.3   3.1e+02     204     225 ..     479     499 ..     446     501 .. 0.74

  Alignments for each domain:
  == domain 1    score: 428.1 bits;  conditional E-value: 2.2e-131
   TIGR01368   1 atlvledGt.vfegksfgaekevvGevvFnTsmtGYqEiltDpsYkgqivvltyplignygvneeda..........eskkikvkglvvkelskevsnyrakesLeeflkeegivaiegvDTRalvkklRekgsmkavistekse.....keelvekakespkvkevnlvkevstkeayeleqkakkegkklrvvvidlGvKenilreLvkr.gvevtvvpadtsaeei.kklnpdgillsnGPGdPaaveeaietvkkllea..kiPifGIclGhqllalalgaktyklkfGhrGaNhpvkdlktgrveitsqNHgyavdeeslkeeelevthvnlnDgtveglehkelpvfsvQyHPeaspGphdteylFdefve 357
                 a l+l+dG+  +e++sfga+ +v GevvFnT+m+GY+E+ltDpsY+gqi+vltypl+gnygv++e++          esk+i+++glvv+ +s + s++ a++sL+++lke++i++i gvDTR+l+k+lRe+gs++++++ e++e      +    ++ e+p++   nlv+evstke++ + +     g++ +++++d+G+K ni+r Lv++ +v++tvvp ++++e+   +++ +g++lsnGPGdP+++ e+i+ ++ +l+    +PifGIclG qllala+gaktyklk+G+rG+N+p++dl+tgr++it qNHg+avd++sl+ e +++ + n nD+t+eg+ h+++p+fsvQ+HPeas Gp dt++lFd+fv 
  MMETSP1061-20121228|5521_1  19 ALLYLADGSdPIEARSFGAPVSVSGEVVFNTGMVGYPEALTDPSYRGQILVLTYPLVGNYGVPDESIedadglpkffESKEIHIAGLVVSSYSWTHSHWAAQKSLASWLKENNIPGICGVDTRELTKTLREHGSILGRVEVETEEngdafGRPCSPDMFEDPNK--RNLVAEVSTKEVVVYGK-----GNSPKIIAYDCGMKFNIIRYLVDThKVQLTVVPFSYDLEANpDNIEWEGLFLSNGPGDPTMCPETIKSIQYALKLepPKPIFGICLGSQLLALAAGAKTYKLKYGNRGMNQPCIDLRTGRCYITPQNHGFAVDSNSLP-ELWKPLFLNANDQTNEGIVHTTKPFFSVQFHPEASGGPCDTAFLFDKFVG 387
                 57999**97369*****************************************************999************************************************************************999884433322333445556665..6************9994.....44457****************986269**********9864267788***********************998875589*********************************************************88.56**********************************************96 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.3
   TIGR01368 204 padtsaeeikklnpdgillsnG 225
                 p+ + ++ i k +pdgi++s G
  MMETSP1061-20121228|5521_1 479 PH-VVMDIIRKEKPDGIIVSMG 499
                 43.44788999********988 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.0     1e-12   2.5e-10      97     327 ..     518     743 ..     513     751 .. 0.84
   2 !   20.6   0.0   1.5e-07   3.6e-05      97     220 ..    1111    1227 ..    1102    1312 .. 0.75

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 1e-12
   TIGR00514  97 esgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdc..siqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldke.gefyflemntriqvehpvtemvtgvdlikeqirvakGeklslkqed 327
                 ++g+  +G +  +i+   d++   e +k++g  +   s     dv+ a+e a++iGypv+i+a+   GG G   + +++el+ +       aka  + d++ +++ ++  + +e +v+ d+  n + +++ +    +   +   +  aps +lt+     +  +a k+++++g +g   +++ l+ e +++  +e+n+r+    +++ + tg  l     +++ G++l   ++ 
  MMETSP1061-20121228|5521_1 518 KAGVEILGTQIPVIEATEDREIFSEKLKEIGETIA-LSYS-ATDVASAKEAANKIGYPVLIRAAYALGGLGSGFAANDEELEAM------AAKAFTTSDQILIDQDLRGWKELEYEVVRDNSDNCITVCNMENfdPLGIHTGDSIVVAPSQTLTNREYFMLRRTALKVVRHLGIVGECNIQYALNPEsERYCIIEVNARLSRSSALASKATGYPLAYVATKLSLGKNLVQIKNS 743
                 67788888888889999999999999999986554.3433.5789999******************************999753......3455557899*************************9997655322577777888889********999999*********************99865156999**************999999999999999999888665555 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 1.5e-07
   TIGR00514   97 esgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGn 220 
                  +sg + +G +a  i+   d+    +++ ++++        ++++++ea+e ++++ +pv+++ +    G  +rv+ +e+el + l  a+       +++ v + kf+e  + +e+  +a++ G+
  MMETSP1061-20121228|5521_1 1111 DSGANILGTDATDIERAEDRFQFSRMLDNMNIGQP--EWSVLKSKDEAIEFSNKVSFPVLVRPSFVLSGAAMRVASTENELRNFLDLAED----VSGDKPVVVTKFVEGAKEIEFDAVANR-GE 1227
                  55556666666666666666666665555554432..2248999****************************************998754....45688999**************99965.44 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   2.8e-13   6.8e-11      95     322 ..     516     738 ..     437     751 .. 0.81
   2 !   19.5   0.1   1.3e-07   3.1e-05     137     292 ..    1149    1300 ..    1077    1305 .. 0.80

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 2.8e-13
   TIGR01235  95 vekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferd..csvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedt.kfyfievnpriqvehtvteeitGidivkaqikvaeGaslp 322
                  +kaG+  +G +  v++   d+    e+ +++g  +  +    +++++ +++ a++iGyPv+++aay  GG G     ++ee++         aka    d++ +++ +   k +e  ++ d+  n + + + +    +       + vaP+++l++     l  +a+k+ ++ +  +   +++ ++ ++ ++  ievn+r+    +++ + tG  +     k+  G+ l 
  MMETSP1061-20121228|5521_1 516 LQKAGVEILGTQIPVIEATEDREIFSEKLKEIGETI--ALSYSATDVASAKEAANKIGYPVLIRAAYALGGLGSGFAANDEELEAM------AAKAFTTSDQILIDQDLRGWKELEYEVVRDNSDNCITVCNMEnfDPLGIHTGDSIVVAPSQTLTNREYFMLRRTALKVVRHLGIVGECNIQYALNPESeRYCIIEVNARLSRSSALASKATGYPLAYVATKLSLGKNLV 738
                 567788888888888888877777777777777555..344567899**************************9999998888753......466666789*************************9887654411456677788899************************************888766488899************99999988877776766666665 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.3e-07
   TIGR01235  137 pvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhl....ferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedtkfyfievnpr 292 
                    ++++e+ +f+++  +Pv+++ ++   G  mrv   e+e+++ ++ a+       G+  v v k++e +k ie   ++++ G+++      +  +  v   +  v  v Pa++l  +  +++  +a  +ak+   ++   ++f+ + + +   ie n r
  MMETSP1061-20121228|5521_1 1149 VLKSKDEAIEFSNKVSFPVLVRPSFVLSGAAMRVASTENELRNFLDLAE----DVSGDKPVVVTKFVEGAKEIEFDAVANR-GEILNYaigeHLENAGVHSGDATV--VLPAQKLYVKTIKHVKRYASSIAKALRITGPFNIQFMAKGN-QVQVIECNLR 1300
                  567899**********************************999887765....567********************99965.666543111123456666666666..47999999999999999999999999999999999977665.8888888877 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   2.9e-08     7e-06      36     181 ..     465     612 ..     440     708 .. 0.66
   2 !   28.8   0.0   4.9e-10   1.2e-07      52     276 ..    1079    1305 ..    1071    1338 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.9e-08
   TIGR01142  36 amqvahrsvvvdmlDadalravierekPdfivpei...eaiatd.aLl...elekegyevvPnar.atkltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviv 181
                 a ++a+r + + +   + ++ +i++ekPd i+  +    a+++  +L    el+k+g+e++ +    ++ t +re   + + +e+g   a    a+ +++ +ea++kiG+P+++++  +  G G+ + +++e++e+   +a + +    +++++
  MMETSP1061-20121228|5521_1 465 ASRMADRVYFLPIR-PHVVMDIIRKEKPDGIIVSMggqTALNVGvELWrsgELQKAGVEILGTQIpVIEATEDREIFSEKL-KEIGETIALSYSATDVASAKEAANKIGYPVLIRAAYALGGLGSGFAANDEELEAMAAKAFTTS----DQILI 612
                 66777777776654.568899********9988763334666542222333899999999987641567888999888766.566655555555788999**********************************98766665443....33333 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 4.9e-10
   TIGR01142   52 dalravierekPdfivpeieaiatdaLl.elekegyevvPn.aratkltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdgvvefcaPiGhrqed.....gdykesWqPqelsekaleeakeiakrvvdaLGGlGlfGvelfvkgdevifsevsprPhdtg 276 
                  + ++ + ere+P  +v  +     ++L   l ++g +++ + a  ++ + +r +  r+  +++++   +++  +s +e  e ++k+ fP++v+p    sG    v  +++++++  + a++ +   ++ v+v +f++   ei   +v + ++++++   iG + e+     gd +     q+l  k+++++k+ a  + +aL  +G f ++++ kg++v + e   r   t 
  MMETSP1061-20121228|5521_1 1079 ERVMDIYERENPVGVVVSVGGQIPNNLAgPLRDSGANILGTdATDIERAEDRFQFSRM-LDNMNIGQPEWSVLKSKDEAIEFSNKVSFPVLVRPSFVLSGAAMRVASTENELRNFLDLAEDVS--GDKPVVVTKFVEGAKEIEFDAVANRGEILNY--AIGEHLENagvhsGDATVVLPAQKLYVKTIKHVKRYASSIAKALRITGPFNIQFMAKGNQVQVIECNLRASRTF 1305
                  5667777888887776666654444444157777777776523334445566666565.5889999999************************************************998764..456799*********************6666..467444430111145555666789**************************************999988877664 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       2.4   5.8e+02      19      48 ..     431     460 ..     430     505 .. 0.76
   2 !   24.7   0.0   9.4e-09   2.3e-06     137     285 ..     562     707 ..     511     708 .. 0.84
   3 !   26.4   0.0   2.8e-09   6.8e-07     105     284 ..    1128    1298 ..    1104    1327 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 2.4
   TIGR01205  19 SakavlkaLkkekydvyavdikkqgswvvk 48 
                 S+ + +kaLk+e ++v+ ++ + ++  + +
  MMETSP1061-20121228|5521_1 431 SGSQCIKALKEEDIEVILINPNIATVQTSQ 460
                 788889999999999999998875443332 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 9.4e-09
   TIGR01205 137 aekekleklglpvivKpareGSSvGvskvkseeeleealeeafeydeevlveeaikg.relevsvlekeealpiieiveekekedFydYeaKYldgsaelvipae.lseeeeekikelalkaykalgcrglaRvDffleke.geiylnEiNt 285
                   ke+++k+g+pv++++a +   +G   + ++eele+++++af  + ++l+++ + g +ele  v++ +++ ++i +++ ++    +d     +  ++ +v p + l+++e+  +++ alk++++lg  g   + + l+ e  ++ + E+N 
  MMETSP1061-20121228|5521_1 562 SAKEAANKIGYPVLIRAAYALGGLGSGFAANDEELEAMAAKAFTTSDQILIDQDLRGwKELEYEVVR-DNSDNCITVCNMEN----FDPLGIHTG-DSIVVAPSQtLTNREYFMLRRTALKVVRHLGIVGECNIQYALNPEsERYCIIEVNA 707
                 23348899***********9999******************************966549*******9.77799999999999....444444444.4555555556***********************************99999*****5 PP

  == domain 3    score: 26.4 bits;  conditional E-value: 2.8e-09
   TIGR01205  105 mdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeea..feydeevlveeaikg.relevsvlekeealpiieiveekekedFydYeaKYldgsaelvipae.lseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiN 284 
                   d+  + ++l+++++ ++++ vl+ k+ +     +e  +k+++pv+v+p+   S   + ++++e+el+++l+ a  ++ d+ v+v ++++g +e+e  ++ +   +   +i e+ e       +a   +g+a +v+pa+ l  +  +++k++a  + kal   g   + f+ +  +++ + E N
  MMETSP1061-20121228|5521_1 1128 EDRFQFSRMLDNMNIGQPEWSVLKSKD-E----AIEFSNKVSFPVLVRPSFVLSGAAMRVASTENELRNFLDLAedVSGDKPVVVTKFVEGaKEIEFDAVANRGEILNYAIGEHLE-------NAGVHSGDATVVLPAQkLYVKTIKHVKRYASSIAKALRITGPFNIQFMAK-GNQVQVIECN 1298
                  5777788999*************3322.2....23467899****************************9987611556889******88648****9998888888888999998.......888999********999*******************************99.5599999999 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   3.3e-13   8.1e-11      11     176 ..     212     371 ..     205     381 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 3.3e-13
   TIGR00566  11 ftynlvqlleelg.aevvvkrndsltlqeieallpllsivisPGPctPdeaaissleliehlaGkl....PilGvClGhqalaqafGadvvraekvkhGkvseiehngaavfaglfnPdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPes 176
                 + +n++++l +    +++v     +  ++ +++  +  + +s GP+ P       ++ i+ +a kl    Pi+G+ClG q la+a Ga+  ++   k+G+     +n+      l   +++ + + h + v++++l++l +   l+ +++   +i h  +p++ vqfhPe+
  MMETSP1061-20121228|5521_1 212 MKFNIIRYLVDTHkVQLTVVPFSYDLEANPDNIEWEG-LFLSNGPGDPTMCPET-IKSIQ-YALKLeppkPIFGICLGSQLLALAAGAKTYKL---KYGNR---GMNQ--PCIDLRTGRCYITPQNHGFAVDSNSLPELWKPLFLNANDQTNEGIVHTTKPFFSVQFHPEA 371
                 5789999987644255666666666677778888777.9*********988776.44443.566777777******************99888...55543...2233..234566677788889***************9999999999999****************96 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.8   0.0   6.3e-13   1.5e-10      13     200 ..     207     385 ..     203     389 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.8 bits;  conditional E-value: 6.3e-13
   TIGR01823  13 ayDs.ftynvvallekaldvrvsvitvhsDkldddllellqlfdaivvGPGPGdPnv.akdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGqvsevktsdaaifegvssvkstryhsLyankesidsllalilledeedqilmsvkakkkPifGvqyhPesvksekesvkllknf 200
                 ayD    +n+++ l ++  v+ +v+   +D       ++  +++ + +  GPGdP    + +  ++   +l      P++GiCLG q l+La Ga+  +l++   G  +      + + + +    + + h + +  +s  +l    l  + +dq    + ++ kP+f vq+hPe+ +   ++  l+ +f
  MMETSP1061-20121228|5521_1 207 AYDCgMKFNIIRYLVDTHKVQLTVVPFSYDLEA---NPDNIEWEGLFLSNGPGDPTMcPETIKSIQYALKLE--PPKPIFGICLGSQLLALAAGAKTYKLKYGNRGMNQPCIDLRTGR-CYI----TPQNHGFAVDSNSLPELWK-PLFLNANDQTNEGIVHTTKPFFSVQFHPEASGGPCDTAFLFDKF 385
                 7885378*********99999999988888754...35566789999********77445555555555554..789**************************999765543333332.333....4578999*****9999554.344456677788999**************999888878888777 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.7e-08   8.9e-06     138     319 ..     559     736 ..     552     753 .. 0.85
   2 !   11.6   0.0   3.5e-05    0.0085     134     291 ..    1148    1300 ..    1116    1364 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.7e-08
   TIGR02712 138 sleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvvalgerdC..slqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaagea 319
                 ++  a+eaa++igyPv+++++   GG+G    ++ eele+        +++f +++ + +++ ++  + +e  ++ d + + +++ + +    l       +  +P+  l+++    l+++a k+++++   +   +++  +++ +++  +evn+rl    +++ + tg  l  +  +l+ g++
  MMETSP1061-20121228|5521_1 559 DVASAKEAANKIGYPVLIRAAYALGGLGSGFAANDEELEAM------AAKAFTTSDQILIDQDLRGWKELEYEVVRDNSDNCITVCNMENfdPLGIHTGDSIVVAPSQTLTNREYFMLRRTALKVVRHLGIVGECNIQYALNPESERYCIIEVNARLSRSSALASKATGYPLAYVATKLSLGKN 736
                 67899*******************************99874......4566777889**********************99988765543225666777777789****************************************************999999999999887766666665554 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 3.5e-05
   TIGR02712  134 gllesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGd.gkGkvvalger..dCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntr 291 
                  ++l+s +ea+e ++++ +Pv+++ +    G  ++  + ++el++       l+e+  +d+ v + kfve a+ +e   + + g+    a+ge   +  +   +  vv   Pa +l  ++ +++++ a+++a+a+   +   ++f+  +k +++  +e n r
  MMETSP1061-20121228|5521_1 1148 SVLKSKDEAIEFSNKVSFPVLVRPSFVLSGAAMRVASTENELRNFL----DLAEDVSGDKPVVVTKFVEGAKEIEFDAVANrGEILNYAIGEHleNAGVHSGDATVV--LPAQKLYVKTIKHVKRYASSIAKALRITGPFNIQFM--AKGNQVQVIECNLR 1300
                  6899**************************************9865....5899999******************98776413333457777522455555555555..577777777777777777777777765544444444..55566666666666 PP

>> TIGR01161  purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00039     0.093      86     248 ..     524     690 ..     486     711 .. 0.81
   2 !   22.8   0.0   4.2e-08     1e-05      91     259 ..    1122    1294 ..    1103    1304 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00039
   TIGR01161  86 vapspealallqdkltqkqllqklglavpeflvelkeeeelekaleelglpvvlKarkggYDGrGqfvikseeeleqalkalgdk..elivEefvkfekElsvivaRskeGevafyPvvenlqkdgilr...lvvapa.alpeklqkkaeelarklveeldlvGvlavE 248
                 +  +  +++ ++d+    + l++ g  ++  +  +++ ++ ++a++++g+pv+++a   +  G G  + +++eele ++++   +  ++++++     kEl   v+R+++ ++++   +en    gi +   +vvap  +l ++     ++ a k+v++l++vG   + 
  MMETSP1061-20121228|5521_1 524 LGTQIPVIEATEDREIFSEKLKEIGETIALSYS-ATDVASAKEAANKIGYPVLIRAA-YALGGLGSGFAANDEELEAMAAKAFTTsdQILIDQDLRGWKELEYEVVRDNSDNCITVCNMENFDPLGIHTgdsIVVAPSqTLTNREYFMLRRTALKVVRHLGIVGECNIQ 690
                 44556789999**************99998886.6799999**********999864.677899999999998888766544333359**********************************999997533378999855666667789999999******99987765 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 4.2e-08
   TIGR01161   91 ealallqdkltqkqllqklglavpeflvelkeeeelekaleelglpvvlKarkggYDGrGqfvikseeeleqalkalgdk....elivEefvkfekElsvivaRskeGevafyPvvenlqkdgilr...lvvapa.alpeklqkkaeelarklveeldlvGvlavElFlledgelLv 259 
                  + ++ ++d+++  ++l+++++  pe+ v lk+++e  ++ +++ +pv+++ +     G    v   e+el+++l+  +d     +++v +fv+  kE+    +  ++Ge+  y + e l++ g+     +vv pa +l  k+ k+++++a++++++l + G + + +      ++ v
  MMETSP1061-20121228|5521_1 1122 TDIERAEDRFQFSRMLDNMNIGQPEWSV-LKSKDEAIEFSNKVSFPVLVRPS-FVLSGAAMRVASTENELRNFLDLAEDVsgdkPVVVTKFVEGAKEIEFDAV-ANRGEILNYAIGEHLENAGVHSgdaTVVLPAqKLYVKTIKHVKRYASSIAKALRITGPFNIQFMAK-GNQVQV 1294
                  5588999********************9.678999999999*****998765.6789***************9987765455559*************98665.679*****************844448999*9778889999********************987643.334555 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0     6e-10   1.4e-07      18     168 ..     221     372 ..     205     388 .. 0.69
   2 ?    0.4   0.0      0.32        76      33      75 ..     482     525 ..     470     530 .. 0.73

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 6e-10
   TIGR00888  18 lrelgvyselvpatttleeike.vepkgiilsGgPes.vkaenaekvdekifelg..vPvlGiCyGmqllakalGgeveraekreygkaelevldedelfkglekelkvWmshgDkv..kelPegfkvla.ksencpvaalkkeekklyGvqfhPevt 168
                 +   +v+  +vp++  le   + +e +g+ ls gP   ++  ++ k  ++ ++l+   P++GiC+G qlla a G ++ + +  + g  +  ++ ++     +         hg +v  ++lPe +k l  +++    + + +++k+++ vqfhPe  
  MMETSP1061-20121228|5521_1 221 VDTHKVQLTVVPFSYDLEANPDnIEWEGLFLSNGPGDpTMCPETIKSIQYALKLEppKPIFGICLGSQLLALAAGAKTYKLKYGNRGMNQPCIDLRTGRCY-IT-----PQNHGFAVdsNSLPELWKPLFlNANDQTNEGIVHTTKPFFSVQFHPEAS 372
                 455678888888888887654438889*******9762555677777777887764479****************99988777666666655544332222.22.....2334333311567888876651344466789****************75 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.32
   TIGR00888  33 tleeikevepkgiilsGgPesvkaenaekv.dekifelgvPvlG 75 
                  ++ i++ +p gii+s g +   + + e   + ++ ++gv +lG
  MMETSP1061-20121228|5521_1 482 VMDIIRKEKPDGIIVSMGGQTALNVGVELWrSGELQKAGVEILG 525
                 477899**********8877766665554414467777777777 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   9.6e-05     0.023      68     129 ..     516     578 ..     508     609 .. 0.86
   2 !   18.4   0.0   8.2e-07    0.0002      71     152 ..    1112    1194 ..    1069    1215 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.6e-05
   TIGR02144  68 leelGvkvins.seviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKP 129
                 l+++Gv+++ +   vi+a++d+ + + kL++ g  +  ++ a+d  +a+++a+++GyPv+++ 
  MMETSP1061-20121228|5521_1 516 LQKAGVEILGTqIPVIEATEDREIFSEKLKEIGETIALSYSATDVASAKEAANKIGYPVLIRA 578
                 6778888886515689999***999**********************************9876 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 8.2e-07
   TIGR02144   71 lGvkvin.sseviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKPveGsWGrlvskvkdkdeaealle 152 
                  +G +++  +++ i++++d++  +  L + ++ +P++ v  +k++a++ ++++ +Pv+++P +   G  +  ++ ++e++ +l+
  MMETSP1061-20121228|5521_1 1112 SGANILGtDATDIERAEDRFQFSRMLDNMNIGQPEWSVLKSKDEAIEFSNKVSFPVLVRPSFVLSGAAMRVASTENELRNFLD 1194
                  5555554156779***********************************************97666666555555555555555 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.022       5.2      67     131 ..     515     580 ..     433     614 .. 0.73
   2 !   25.0   0.0   9.6e-09   2.3e-06      81     174 ..    1123    1215 ..    1104    1220 .. 0.92

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.022
   TIGR00768  67 aleslGveviNssq.aienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvf 131
                  l+++Gve++     +ie+ +d+ + s +L + g  +  +++a++  +ak+++++ig+Pv ++ + 
  MMETSP1061-20121228|5521_1 515 ELQKAGVEILGTQIpVIEATEDREIFSEKLKEIGETIALSYSATDVASAKEAANKIGYPVLIRAAY 580
                 578889999876543899999**999**********************************988754 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 9.6e-09
   TIGR00768   81 aienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaekllealeqlkekykvflvQeyikksg 174 
                   ie+a+d++  s +L + ++ +p++ v++s++ea ++ ++++fPv ++p f   G ++  + +++e+++ l+  e + +  k ++v ++++ ++
  MMETSP1061-20121228|5521_1 1123 DIERAEDRFQFSRMLDNMNIGQPEWSVLKSKDEAIEFSNKVSFPVLVRPSFVLSGAAMRVASTENELRNFLDLAEDVSG-DKPVVVTKFVEGAK 1215
                  599************************************************************************9996.67778888888665 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   0.00026     0.062      20     206 ..     439     632 ..     411     648 .. 0.78
   2 !   18.2   0.0     8e-07   0.00019      43     209 ..    1068    1230 ..    1042    1241 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00026
   TIGR00877  20 akseqvkevyvapgNaGtarlekekeveievt.......dleevvefakkkkid..lavigpEapLvlGl....vdaleeaGikvfGpkkeAaklEasKafakdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefleG.eEvsllalvdgkt 206
                  k+e  + ++++p  a +++ ++++e+   ++         + v+++ +k+k d  ++ +g    L  G+      +l++aG++++G +    +   +++   + lk++g  +a     t+++ ake  ++ g p ++++a    +G g   +++ ee ++++++++++      +++++i++ l+G +E+ + ++ d+++
  MMETSP1061-20121228|5521_1 439 LKEEDIEVILINPNIATVQTSQEKEEASRMADrvyflpiRPHVVMDIIRKEKPDgiIVSMGGQTALNVGVelwrSGELQKAGVEILGTQIPVIEATEDREIFSEKLKEIGETIALSYSATDVASAKEAANKIGYP-VLIRAAYALGGLGSGFAANDEELEAMAAKAFTT------SDQILIDQDLRGwKELEYEVVRDNSD 632
                 45666666666666666666666666665555777777777888899999999844445688999999995555589**********998887776777777788999999999999999**************9.888888788999*99999999988888877777......479*********66888888888765 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 8e-07
   TIGR00877   43 ekeveievtdleevvefakkkkidlavigpEapLvlGlvdaleeaGikvfGpkkeAaklE.asKafa.kdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefleG.eEvsllalvdgktvvp 209 
                  ++++  e+  le+v+++ + ++   +v++    + + l+  l++ G +++G   +A+ +E a+ +f   ++l++++i ++e++v+++ +ea e+ +++++p ++v+++ + +G    v+++e+e  + ++ + e+     + ++vv+ +f+eG +E+ + a+ ++ ++++
  MMETSP1061-20121228|5521_1 1068 SERLYFEELSLERVMDIYERENPVGVVVSVGGQIPNNLAGPLRDSGANILGT--DATDIErAEDRFQfSRMLDNMNIGQPEWSVLKSKDEAIEFSNKVSFP-VLVRPSFVLSGAAMRVASTENELRNFLD-LAEDV---SGDKPVVVTKFVEGaKEIEFDAVANRGEILN 1230
                  555555555666777776666666667777777778889999999*****97..577777444445325799****************************9.9*****************9999877765.55553...7899**********55999998888776665 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.8e-09   9.2e-07     510     688 ..     194     371 ..     178     374 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.8e-09
   TIGR01815 510 vakvgeGkrillvdhedsfvhtlanylrqtGa.svttlrhsva.eelldeerpdlvvlspGpGrpkdf.dvketikaalard..lpvfGvclGlqglveafGGeldvlaepvhGkasrirvlepdvlfaglpeeltvGryhslfarsdrlpkelk.vtaesedgvimaiehrklpvaavqfhpes 688
                 v   g+G++  ++ ++  +   +  yl +t    +t +  s+  e+  d+   + + ls GpG p+   +  ++i+ al+++   p+fG+clG q l+ a G +  +l++   G +     l +       ++     + h +  +s+ lp+  k +  +++d++  +i h ++p  +vqfhpe+
  MMETSP1061-20121228|5521_1 194 VVVYGKGNSPKIIAYDCGMKFNIIRYLVDTHKvQLTVVPFSYDlEANPDNIEWEGLFLSNGPGDPTMCpETIKSIQYALKLEppKPIFGICLGSQLLALAAGAKTYKLKYGNRGMNQPCIDLRT-------GRCYITPQNHGFAVDSNSLPELWKpLFLNANDQTNEGIVHTTKPFFSVQFHPEA 371
                 555556666666666666666666666666541344444444413344566667789********864244555666777663358****************************8877666666.......56666778999999******98874667889*********************96 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00062      0.15     209     296 ..     532     618 ..     520     630 .. 0.81
   2 !   12.6   0.0   2.2e-05    0.0052     207     297 ..    1123    1214 ..    1113    1222 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00062
   TIGR02068 209 eiasDkeltkklLkaaGvPvPeGtvvqsaeeaeeaaeelGyPvvikPld..GnhGrGvtiniesreeiesayeaakeesseviverfikG 296
                 e ++D+e+  + Lk+ G  +    ++  ++ a+eaa+++GyPv i+     G  G G +    + ee+e+  + a  +s+++++++ ++G
  MMETSP1061-20121228|5521_1 532 EATEDREIFSEKLKEIGETIALSYSATDVASAKEAANKIGYPVLIRAAYalGGLGSGFAA---NDEELEAMAAKAFTTSDQILIDQDLRG 618
                 5678888889999999999999999999******************87622566666654...467888888899999999999998888 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.2e-05
   TIGR02068  207 aveiasDkeltkklLkaaGvPvPeGtvvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees..seviverfikGr 297 
                   +e a+D+    ++L+++ +  Pe +v++s++ea+e  +++ +Pv ++P     G  + +  ++ +e+ +  ++a+++s  + v+v +f++G 
  MMETSP1061-20121228|5521_1 1123 DIERAEDRFQFSRMLDNMNIGQPEWSVLKSKDEAIEFSNKVSFPVLVRPSFVLSGAAMRVA-STENELRNFLDLAEDVSgdKPVVVTKFVEGA 1214
                  456688999999**************************************99999988885.788999999*******98788*******996 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0025      0.61      67      86 ..     273     292 ..     241     301 .. 0.82
   2 ?    3.5   0.0     0.049        12     172     185 ..     360     373 ..     348     384 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0025
   TIGR01855  67 vvkkkkpvlgiClGmQllfe 86 
                 + +  kp+ giClG Qll+ 
  MMETSP1061-20121228|5521_1 273 KLEPPKPIFGICLGSQLLAL 292
                 556679***********975 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.049
   TIGR01855 172 dnivgvQFHPEkSg 185
                 + +++vQFHPE Sg
  MMETSP1061-20121228|5521_1 360 KPFFSVQFHPEASG 373
                 56899******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.03u 0.15s 00:00:01.18 Elapsed: 00:00:00.64
# Mc/sec: 3194.55
//
Query:       MMETSP1061-20121228|5520_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-65  218.4   0.2    3.6e-65  218.2   0.1    1.0  1  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.2   0.1   8.7e-69   3.6e-65     335     540 ..       1     211 [.       1     219 [. 0.89

  Alignments for each domain:
  == domain 1    score: 218.2 bits;  conditional E-value: 8.7e-69
   TIGR00811 335 ttldievgvddnifgvsdgiqeffnlgflgaiittilasiawqlvasafpiaflsnpvvyivlrivllieatgicagawflgmihkkvagfqldevyvgtaeeraagekpdhsvhagreftlgtnvlsdrknweealan...ls.vketfsvrrerilknikelkelleeassdeekaafeaalalevkaldklneeeee..eadlkkeved 540
                 tt+++ +g ddnifgvsd iq+++nlgf+gai ttil siawqlvas+fpiaflsnp+v++ l+  l++eatgic +awfl   ++kv gfq devyvgt eeraa    d  +ha  ++ l t + + +   ++  a    ls ++et+s rre +l nik+++e +  +++deek afe+al+le+ ++++ln++e +  + d+ ++++ 
  MMETSP1061-20121228|5520_1   1 TTVNVVIGEDDNIFGVSDQIQKMLNLGFMGAITTTILGSIAWQLVASSFPIAFLSNPIVFVFLQAALFLEATGICYAAWFLAWCQRKVMGFQYDEVYVGTPEERAAKGFAD-NLHADDNLPLATYLPAGAVGADDLAARfkpLSvMQETYSSRREHVLANIKNIREQIALSTTDEEKDAFEHALKLEIASMSRLNNDEMKskRFDAADKMDA 211
                 799******************************************************************************************************988777.69**********99887766666554322288789************************************************99987213344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1337.89
//
Query:       MMETSP1061-20121228|5531_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   15.0   0.2       0.72    8.3   0.0    2.4  2  TIGR02801 tolR: protein TolR
  ------ inclusion threshold ------
      0.041   12.3   0.9       0.46    8.9   0.1    2.6  3  TIGR01410 tatB: twin arginine-targeting protein translocase TatB


Domain annotation for each model (and alignments):
>> TIGR02801  tolR: protein TolR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0066        14      95     118 ..      20      43 ..       3      48 .. 0.77
   2 !    8.3   0.0   0.00035      0.72      61     114 ..     101     150 ..      80     151 .] 0.72

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0066
   TIGR02801  95 evliradkkvkYgevikvlallkk 118
                  + i++d +++ +e+ +v+++l +
  MMETSP1061-20121228|5531_1  20 MFDINGDGTIELNEIKQVMRKLGQ 43 
                 5669****************9976 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00035
   TIGR02801  61 klalnekkkekkeeleakellkevakeleakkesevliradkkvkYgevikvla 114
                 + +++ k+ +   +l +k+l ++++++   +  +ev +++d +++Y+e  ++++
  MMETSP1061-20121228|5531_1 101 NGSIDRKELK---RL-MKKLGQALTEAEVDAMMDEVDVNGDGTISYEEFKSMMS 150
                 4444444433...33.345788888888888888*************9888885 PP

>> TIGR01410  tatB: twin arginine-targeting protein translocase TatB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.081   1.7e+02      38      69 ..      14      45 ..       7      53 .. 0.64
   2 ?    8.9   0.1   0.00023      0.46      37      79 ..      49      91 ..      32      92 .. 0.90
   3 ?    0.4   0.0     0.099     2e+02      39      61 ..     106     128 ..     100     137 .. 0.55

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.081
   TIGR01410 38 lrklasdvkneldeelkleelkeelkeveklr 69
                l++ +  +  + d  ++l+e+k++++++ +  
  MMETSP1061-20121228|5531_1 14 LKEAFAMFDINGDGTIELNEIKQVMRKLGQNP 45
                55555555555566788888888888776554 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00023
   TIGR01410 37 alrklasdvkneldeelkleelkeelkeveklrilnltaeLkk 79
                +l++++s+v ++ d+e+ +ee+   +k   +   +++++eLk+
  MMETSP1061-20121228|5531_1 49 ELKEMISTVDDNGDHEIDFEEFLVLMKSRTDTDPKDPEKELKD 91
                689**************************************98 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.099
   TIGR01410  39 rklasdvkneldeelkleelkee 61 
                 rk ++ + ++l ++l ++e++  
  MMETSP1061-20121228|5531_1 106 RKELKRLMKKLGQALTEAEVDAM 128
                 34444444455555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 797.21
//
Query:       MMETSP1061-20121228|5535_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.6   0.4      0.019   13.2   0.2    1.1  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P
       0.11   10.7   6.8       0.13   10.5   4.7    1.1  1  TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family
       0.46    6.1  12.9       0.53    5.9   8.9    1.0  1  TIGR03658 IsdH_HarA: haptoglobin-binding heme uptake protein HarA


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.2   1.4e-05     0.019      53      95 ..      24      66 ..      21      73 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-05
   TIGR03685 53 aiekaaaapvaaaaaaaaaaeaaeeekeeeeeeeeekeeeeee 95
                +++++aaap aa+aa+++ +++++ ++++ +++ +++++++++
  MMETSP1061-20121228|5535_1 24 VLRETAAAPLAASAATSTGSNNNNTNNNNTNNNTNNNNNNNNK 66
                6778888888888888777766666665555444444443333 PP

>> TIGR02898  spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   4.7   9.2e-05      0.13      22      62 ..      43      78 ..      23      81 .. 0.41

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 9.2e-05
   TIGR02898 22 skdnnnveeknveekaangentakdtnqgeklevadkiake 62
                s +nnn++++n++++ +n++n+++    ++ + +  +ia+e
  MMETSP1061-20121228|5535_1 43 S-NNNNTNNNNTNNNTNNNNNNNN----KTNTSIIVRIAHE 78
                2.2222222222222222222222....2344444445544 PP

>> TIGR03658  IsdH_HarA: haptoglobin-binding heme uptake protein HarA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   8.9   0.00039      0.53     228     276 ..      22      70 ..      13      77 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00039
   TIGR03658 228 slvksdtndavvtndqsssdasnqtntntsnqnistinnannqpqattn 276
                  lv  +t  a ++   ++s  sn+ ntn  n n  t nn nn+ ++ t 
  MMETSP1061-20121228|5535_1  22 KLVLRETAAAPLAASAATSTGSNNNNTNNNNTNNNTNNNNNNNNKTNTS 70 
                 5888999999999999******************999999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|5534_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1966.64
//
Query:       MMETSP1061-20121228|5538_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 579.29
//
Query:       MMETSP1061-20121228|5540_1  [L=832]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-73  243.7   0.0    9.1e-73  243.1   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    3.3e-05   21.3   0.0    6.9e-05   20.2   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    5.5e-05   20.2   0.0     0.0036   14.3   0.0    2.4  2  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.1   0.0   6.7e-76   9.1e-73      19     425 ..     109     522 ..     100     531 .. 0.88

  Alignments for each domain:
  == domain 1    score: 243.1 bits;  conditional E-value: 6.7e-76
   TIGR01982  19 lvekivelsllllakllakvskeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFa...efeekPlAaASiaQvhkAvlv.egkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkn...dkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgepivgk.....plkeisigklLaklfkitek..felevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkkl 425
                 + +k +++ l l++ +l+  ++ ++++e++g  l++ l elGP+fiK+GQ ls R+Dll + +++ Ls Lqd+vp+fd+++a++++e+e g pve++ +   +  + P+AaAS++Qv++A+l+ +gkeVa+Kv+RP i+++i+ d++ll+ +a ++ ++++     +    v+       +Eld+ +Ea+n + ++e++kn   ++ +  P+v+ e+ts +vl++ewidg  ++   +      d   l +  +++ l++ l+ g+ H D+HpGN+l + +gk+ +lD G+v ++ ++ +  l+e +  + +rdy++v   +  +g+vp+d++     + +  v   i+g+      +  i+ +++L +l +++++     +++p ++ ++K++ ++EG+g + d++ ++ +   p+v++ 
  MMETSP1061-20121228|5540_1 109 IASKSLTFALSLAQDFLRGDETWTKNQEQRGLELAQLLTELGPTFIKIGQSLSIRTDLLSPAYIRGLSSLQDRVPAFDTATAKAILEEEWGVPVEQVLEgglSETTSPVAAASLGQVYRAKLKgSGKEVAIKVQRPKITNQIALDMHLLREAAPIARRTFNLN--TDAEGTVDAWGVGFVDELDYLQEARNGQYFTEQIKNtslKDVVLAPTVIDEYTSGKVLVTEWIDGERLDRSSQ-----ADVTVLCSICMNTYLTMLLEMGVLHCDPHPGNLLRTPEGKLCILDWGMVTSIPPQLQLTLIEHMAHLTSRDYDEVPRDLYLLGFVPADKEDVIEDSGVVDVLAGIYGQwtdggGMASINANEVLSQLQDLAATkgNLFQIPPYFAYIAKSFSVLEGIGLSNDAKYSIIDECLPYVSNR 522
                 44557778888888888888888888899***************************************************************999765421133457***************8568********************************99554..58999**************************98888322467999********************88876554.....4778***********************************************************************************98766666677788887777633333689***********998654114579**********************************99865 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.1e-08   6.9e-05      56     136 ..     311     393 ..     292     404 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 5.1e-08
   TIGR03724  56 kagvntPvvydvdpeekkivmeyiegkklkdlleekelellk.evGelvgklHkagivhgDlttsNiivk.ddklyliDfGLg 136
                 k  v +P+v+d  ++ k +v e i+g++l  + +++ + l++  + +++ +l + g++h D+++ N++ + ++kl+++D G+ 
  MMETSP1061-20121228|5540_1 311 KDVVLAPTVIDEYTSGKVLVTEWIDGERLDRSSQADVTVLCSiCMNTYLTMLLEMGVLHCDPHPGNLLRTpEGKLCILDWGMV 393
                 455889**************************999777554425778999****************9986599********95 PP

>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0051         7      47      87 ..     309     351 ..     293     361 .. 0.76
   2 !   14.3   0.0   2.6e-06    0.0036     142     188 ..     361     408 ..     350     420 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0051
   TIGR02721  47 alsalklaPkvilvneew..llvewleGevitkdefvaldell 87 
                  l+++ laP vi +  ++  l+ ew++Ge + +  +  +  l+
  MMETSP1061-20121228|5540_1 309 SLKDVVLAPTVIDEYTSGkvLVTEWIDGERLDRSSQADVTVLC 351
                 688999*****987655433788*****988776666555555 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.6e-06
   TIGR02721 142 aplklallHlDvhaeNlvkteqG.lklIDWEYAsdgDialeLaavlra 188
                   l++  lH D h +Nl++t++G l ++DW   +   ++l+L+++  +
  MMETSP1061-20121228|5540_1 361 MLLEMGVLHCDPHPGNLLRTPEGkLCILDWGMVTSIPPQLQLTLIEHM 408
                 5688999****************55678**************998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (832 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 2889.87
//
Query:       MMETSP1061-20121228|5539_1  [L=801]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-124  414.1   0.0   3.1e-124  412.6   0.0    1.7  1  TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
  ------ inclusion threshold ------
      0.035   10.4   0.0      0.053    9.8   0.0    1.1  1  TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component


Domain annotation for each model (and alignments):
>> TIGR00612  ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.6   0.0  1.5e-127  3.1e-124       1     357 []     126     779 ..     126     779 .. 0.98

  Alignments for each domain:
  == domain 1    score: 412.6 bits;  conditional E-value: 1.5e-127
   TIGR00612   1 rrktrkvrvGnvkvGgdapikvqsmtntlttDidstveqikaLeeagcdivRvtvqdieeaealekikerlialklnvPlvaDihfalkkaallvadavdkvRinPGniidkrk..........s........leekvadlvekakrlgkalRiGvnaGsLserllekygddtaealvqsaleyiavlekldfrdvvlslkasnvkelvaayrqlakrlD.....vpLhlGvteaGmgvkGiiksavgigtlLaegiGdtiRvsLteeptkeikva.....................................................................................................................................................................................................................................................................................feiLqelGlRkvkvelvaCPsCgRtlfdleevvkrvrkrtqhlkgplkvavmGCivngpGeakdaDlGlvgsktgaialyvkgkkvkakiseedaaeelikliq 357
                 rrktr+v+ G ++ G+++pi+ q+m +t+t+D+d+t+eq+++ ++ g d+vR+tvq+++ea a +ki+e l + + ++Pl aD+hf  +k al+vad ++k+RinPGn+ d rk          +        l + + +lve++k+l+  +RiG n+GsLs r+l+ yg dt+ ++v+sale+++++e    +   +s+kasn+ ++v+ yr+la +       +pLhlGvteaG+g++G++ksavgigtlLa+g+GdtiRvsLte+p+ e k +                                                                                                                                                                                                                                                                                     f++Lq + lR++k+e+v+CPsCgRtlfdl+e++++++++t hl+g +++avmGCivngpGe++daD+G+vg+  g+++ly  ++ v++ i++e+a++el++li+
  MMETSP1061-20121228|5539_1 126 RRKTRTVTCGPINFGSEHPIVRQTMATTNTADVDATIEQVMRCADEGFDLVRITVQGKREAIAAAKIREGLFKKGYDIPLCADMHF-QPKVALMVADCLEKIRINPGNFADGRKdfeekiyeteEdyvterqyLLDAMYPLVERCKELDRCMRIGTNHGSLSSRVLSFYG-DTPRGMVESALEFADIVEARITTTSFFSMKASNPLVMVQSYRLLAAEQYrmgwdYPLHLGVTEAGEGEDGRMKSAVGIGTLLADGLGDTIRVSLTEDPEYEYKPCnrlaemaearlainpeakerqaavksykdtrditayqrragslpeqaegdsvdvrgflhrdgsvlsvvtpemlskenvqylyqelgcktavgmpfkdiatsdsiymptippssdtdartalrrlievsvgvvvpaeelekdplpnavalvslkeaiasngklpegairlaiaidgdedddeilkvkemnpvmcilkpkkgishlhssrrvfelfnandidtavihhfttdtddsnelalqigtqigslltdgngdgimveqigekssfsvdflrttsFSLLQGARLRNTKTEFVSCPSCGRTLFDLQETTANIQDATGHLPG-VTIAVMGCIVNGPGEMADADFGYVGTLPGKVDLYYGKEVVRKSIPNENAVDELVDLIK 779
                 8*************************************************************************************.7888899*****************99977776666650566667789999*********************************.********************************************9875344455*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************.*******************************************************996 PP

>> TIGR02041  CysI: sulfite reductase (NADPH) hemoprotein, beta-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   2.6e-05     0.053     380     499 ..     656     767 ..     642     794 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2.6e-05
   TIGR02041 380 liiaevsekekakieklak.kyGlidgkvtalrknslacvalptcplamaeaerylpdfiakldkilekyGladeeivlrvtGc.pnGcarallaeiglvGkapGrynlylGgdregsrlnk 499
                 +++ ++ ek+   ++ l + ++ l++   ++lr+     v+ p+c+       r l d+ +   +i    G     +++ v Gc  nG +  + a+ g+vG  pG+ +ly G +  ++ +++
  MMETSP1061-20121228|5539_1 656 IMVEQIGEKSSFSVDFLRTtSFSLLQ--GARLRNTKTEFVSCPSCG-------RTLFDLQETTANIQDATGHLPG-VTIAVMGCiVNGPGEMADADFGYVGTLPGKVDLYYGKEVVRKSIPN 767
                 56667777777777776541455665..567788888888888887.......7777888888888888887665.5566667747**************************9887776663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.70
# Mc/sec: 1510.33
//
Query:       MMETSP1061-20121228|5543_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-05   22.2   0.4    9.7e-05   19.9   0.3    2.1  1  TIGR03552 F420_cofC: 2-phospho-L-lactate guanylyltransferase


Domain annotation for each model (and alignments):
>> TIGR03552  F420_cofC: 2-phospho-L-lactate guanylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   2.4e-08   9.7e-05      11     106 ..      54     208 ..      43     267 .. 0.68

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.4e-08
   TIGR03552  11 eaKtRLspvlseeeReelvlamlkdvvkalkeaea....aevlvvtpd........................................................ealleaarslgaevlkdekeeLnealeeaaaeaseedtqavlvlmaDLPllr 106
                 ++KtRL p+l +e   +l+++ml dv+k+++ ++     +++l+ +p                                                          a le+a  ++++ +++++++ n++ ++ +++ ++++++ v+ +  D P+l 
  MMETSP1061-20121228|5543_1  54 KSKTRLIPLLGQEGSVRLAKSMLSDVLKTIDGCKElnavRKILLYAPGtseglermeallaelglettterstttvdggqpnnawrllpmatssttndlrsndlGAKLEDA-LVRVRAIAENEAKQNQTQQQQQQQQQQDGDGGVVFVGMDAPILP 208
                 68*****************************99877666666666666777777777777777777777777777777777777666666666666666665553333333.24555566655555666555555555556666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1230.48
//
Query:       MMETSP1061-20121228|5545_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    7.7   2.8       0.27    7.3   2.0    1.1  1  TIGR00596 rad1: DNA repair protein (rad1)


Domain annotation for each model (and alignments):
>> TIGR00596  rad1: DNA repair protein (rad1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   2.0   6.7e-05      0.27     322     396 ..     329     404 ..     313     416 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 6.7e-05
   TIGR00596 322 rgsekfllrklrqyrkqreklkklakevkkkeaakenassr.vnktlrkekvaskrrrvrgakeaaveklreeetd 396
                 rg  ++l + ++ yrk+  k ++ a++ k++  + e++ ++  ++++r++   s+r+r r+++++ +e   ++ td
  MMETSP1061-20121228|5545_1 329 RGFFRVLSEDIHAYRKKLAKRRRAARSAKHHARKAERKRRKkKKSSSRRDGRKSSRNRSRSGGDRHIELAPTHSTD 404
                 777899999*********9999998888877666665554426777888899999999999999887777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.24
# Mc/sec: 2309.81
//
Query:       MMETSP1061-20121228|5546_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    9.9   1.9        0.7    7.9   0.3    2.3  2  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639


Domain annotation for each model (and alignments):
>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3   0.00017       0.7       7      46 ..      11      48 ..      10      53 .. 0.82
   2 ?   -3.5   0.0      0.59   2.4e+03      43      54 ..     214     225 ..     208     226 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00017
   TIGR01639  7 skkltkEelnelinsLdeivnrndmlsiWnqvveierekf 46
                s+++++Eel +++  L ei +       W qvve+ rekf
  MMETSP1061-20121228|5546_1 11 SANYSEEELRHMLGVLKEIKPTDP--DEWQQVVEKHREKF 48
                6789************99977664..34888888888887 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.59
   TIGR01639  43 rekfvkmqenLk 54 
                  +  ++m+e+L+
  MMETSP1061-20121228|5546_1 214 SDDRKMMVEELR 225
                 555678999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.34
# Mc/sec: 1098.62
//
Query:       MMETSP1061-20121228|5548_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 2325.86
//
Query:       MMETSP1061-20121228|5549_1  [L=827]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       425  (0.103608); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 3118.71
//
Query:       MMETSP1061-20121228|5551_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 892.50
//
Query:       MMETSP1061-20121228|5550_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 2561.41
//
Query:       MMETSP1061-20121228|5553_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00048   17.7  22.6      0.037   11.8   0.1    6.1  6  TIGR01376 POMP_repeat: chlamydial polymorphic outer membrane protein repeat


Domain annotation for each model (and alignments):
>> TIGR01376  POMP_repeat: chlamydial polymorphic outer membrane protein repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.11   4.7e+02       5      18 ..     161     176 ..     160     177 .. 0.76
   2 !   11.1   0.4   1.5e-05     0.061       6      21 ..     192     207 ..     192     209 .. 0.93
   3 !    3.8   0.7     0.003        12       6      22 ..     218     234 ..     218     236 .. 0.88
   4 ?   -0.1   0.0     0.054   2.2e+02       3      13 ..     242     252 ..     241     254 .. 0.81
   5 !   11.8   0.1   8.9e-06     0.037       6      23 ..     566     582 ..     565     585 .. 0.90
   6 ?    1.5   0.5     0.017        69       7      22 ..     592     607 ..     591     610 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.11
   TIGR01376   5 ilFsnNsakg..sGGA 18 
                 ++F +Ns ++  +GGA
  MMETSP1061-20121228|5553_1 161 TSFMENSRTKdsRGGA 176
                 6899998777788888 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 1.5e-05
   TIGR01376   6 lFsnNsakgsGGAIya 21 
                 +F +N +k++G AIy+
  MMETSP1061-20121228|5553_1 192 FFFENFSKTYGAAIYS 207
                 69*************8 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.003
   TIGR01376   6 lFsnNsakgsGGAIyat 22 
                 lF nN++ g+G A +  
  MMETSP1061-20121228|5553_1 218 LFVNNKSNGYGSAVFVA 234
                 699**********9865 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.054
   TIGR01376   3 gtilFsnNsak 13 
                 +t++F++N+  
  MMETSP1061-20121228|5553_1 242 KTTTFTGNKGR 252
                 589*****876 PP

  == domain 5    score: 11.8 bits;  conditional E-value: 8.9e-06
   TIGR01376   6 lFsnNsakgsGGAIyatg 23 
                 +F +N a  +GGAI+++g
  MMETSP1061-20121228|5553_1 566 TFKGNVAS-RGGAIHSEG 582
                 7*******.*******94 PP

  == domain 6    score: 1.5 bits;  conditional E-value: 0.017
   TIGR01376   7 FsnNsakgsGGAIyat 22 
                 F  N a +sG AI+ +
  MMETSP1061-20121228|5553_1 592 FVANNAYHSGNAIFVG 607
                 778**********987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 2464.99
//
Query:       MMETSP1061-20121228|5554_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1143.91
//
Query:       MMETSP1061-20121228|5559_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-83  276.6   1.4    3.2e-83  276.4   1.0    1.1  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
    0.00084   15.8   3.4      0.013   11.8   0.5    2.1  2  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit
      0.008   13.5   0.5      0.015   12.6   0.1    1.6  2  TIGR03198 pucE: xanthine dehydrogenase E subunit
  ------ inclusion threshold ------
      0.012   11.5   0.1      0.016   11.0   0.1    1.1  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
      0.019   11.6   1.5      0.027   11.0   1.1    1.2  1  TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
       0.14    8.8   3.8       0.28    7.8   2.7    1.5  1  TIGR00273 TIGR00273: iron-sulfur cluster-binding protein
       0.22    9.4  10.1        1.6    6.6   7.0    2.1  1  TIGR03290 CoB_CoM_SS_C: CoB--CoM heterodisulfide reductase, subunit C
          1    6.8   9.8         13    3.2   6.1    2.6  2  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I


Domain annotation for each model (and alignments):
>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  276.4   1.0   6.3e-86   3.2e-83       1     222 []      66     300 ..      66     300 .. 0.97

  Alignments for each domain:
  == domain 1    score: 276.4 bits;  conditional E-value: 6.3e-86
   TIGR00384   1 vlRfnpdvdek.phlesyevevdektlsvLdaLeqikkeqdaslafRksCReaiCGscavkvngkpkLACktkvedleqllkliieplanlpvikDLvvdleefiekleaikpYlirkeqkeeee............ellqtpeeleklkelseCieCglCyssCpakklnee.flGPaalakaarfllDsRDeatkeRlealndkkgvysCttvakCsevCPkevdpasaieklk 222
                 v+R++p+++++ p+l++y v+++++  +vLdaL +ik+eqd+sl+fR+sCRe+iCGsca+++ g ++LAC + +++ +++ + +i+pl+++ v kDLv d+++f+e++++i+p+l+++e++++++            e+lq+ ++++kl+ ++eCi+C++C++sCp++++n + +lGPa+l++a+r++ DsRD++t++Rle+l d+  +y+C+t+++C++vCPk+++p +ai+++k
  MMETSP1061-20121228|5559_1  66 VYRWDPEQENQkPYLSTYPVDLNDCGPMVLDALLKIKNEQDPSLTFRRSCREGICGSCAMNIQGTNTLACLAYIDEDTSKAT-KIYPLPHMYVLKDLVPDMGNFYEQYRSIEPWLQTSEEQTPRAspgadgntklqgEFLQSKQDRAKLDGMYECILCACCSTSCPSYWWNADkYLGPAVLMQAYRWIEDSRDTSTSKRLEELDDAFKLYRCHTIMNCTKVCPKHLNPGKAIAQIK 300
                 79****998766***************************************************************9887665.9**********************************9999888899*******************************************999***********************************************************998 PP

>> TIGR01945  rnfC: electron transport complex, RnfABCDGE type, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.5   2.6e-05     0.013     384     417 ..     199     232 ..     191     240 .. 0.84
   2 !    4.3   0.1    0.0051       2.6     362     390 ..     273     301 ..     259     306 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.6e-05
   TIGR01945 384 lallakaeeydeaeelnlmDCieCGsCayvCPsk 417
                 l+   ++++ d+a+  ++ +Ci C +C+ +CPs 
  MMETSP1061-20121228|5559_1 199 LQGEFLQSKQDRAKLDGMYECILCACCSTSCPSY 232
                 5556667788999999999*************95 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0051
   TIGR01945 362 ekaCirCgkCveaCPvsLlPqqlallaka 390
                    C    +C+++CP  L+P +  +++k+
  MMETSP1061-20121228|5559_1 273 LYRCHTIMNCTKVCPKHLNPGKAIAQIKK 301
                 456778889***********987777665 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   2.8e-05     0.015      36      63 ..     111     138 ..      94     150 .. 0.84
   2 ?   -2.9   0.0       1.7   8.9e+02      59      99 ..     243     283 ..     220     302 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.8e-05
   TIGR03198  36 tkvscgigrcgacavlvdgkvanacllm 63 
                  ++sc  g cg+ca+ ++g  + acl  
  MMETSP1061-20121228|5559_1 111 FRRSCREGICGSCAMNIQGTNTLACLAY 138
                 479*********************9854 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.7
   TIGR03198  59 acllmayqaegkevvtiegiaeneldpvqkafleeggfqcg 99 
                 a l+ ay+  + +  t      +eld   k +     ++c 
  MMETSP1061-20121228|5559_1 243 AVLMQAYRWIEDSRDTSTSKRLEELDDAFKLYRCHTIMNCT 283
                 55566665555555555555555555555555444444444 PP

>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   3.2e-05     0.016      29      64 ..     109     144 ..      95     150 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.2e-05
   TIGR03311  29 tsvknGcaeGacGactvlvnGkavkaclftveklaG 64 
                  + +  c eG cG+c + ++G  + acl+ ++  + 
  MMETSP1061-20121228|5559_1 109 LTFRRSCREGICGSCAMNIQGTNTLACLAYIDEDTS 144
                 456789**********************99887655 PP

>> TIGR03379  glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   1.1   5.2e-05     0.027       6      81 ..     218     303 ..     214     307 .] 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 5.2e-05
   TIGR03379   6 scikctvctvvcpvakanp.lypgpk...qagpdgerlr....lksaelydealky..ctnckrcevacpsdvkigdliararaky 81 
                 +ci c+ c++ cp    n  +y gp    qa    e  r     k  e  d+a+k+  c     c   cp  ++ g  ia+ +++ 
  MMETSP1061-20121228|5559_1 218 ECILCACCSTSCPSYWWNAdKYLGPAvlmQAYRWIEDSRdtstSKRLEELDDAFKLyrCHTIMNCTKVCPKHLNPGKAIAQIKKRM 303
                 7************99877538****6444776555544411114566789**9996569999*****************9998875 PP

>> TIGR00273  TIGR00273: iron-sulfur cluster-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   2.7   0.00055      0.28     292     373 ..     216     304 ..     205     307 .] 0.73

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00055
   TIGR00273 292 vlaCirCgaClneCPvy.....rkiGghaygsiyp...GPiGvvlspllgglkdykelpylsslCgkCsevCPvkiplaelirelrrdiv 373
                 + +Ci C+ C  +CP y     + +G     + y           s  l+ l+d  +l y +    +C++vCP +++  + i ++++ ++
  MMETSP1061-20121228|5559_1 216 MYECILCACCSTSCPSYwwnadKYLGPAVLMQAYRwieDSRDTSTSKRLEELDDAFKL-YRCHTIMNCTKVCPKHLNPGKAIAQIKKRMA 304
                 568*************944443345655556666411134456677788888886554.88999999******99999999999998776 PP

>> TIGR03290  CoB_CoM_SS_C: CoB--CoM heterodisulfide reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   7.0    0.0031       1.6       3      73 ..     218     301 ..     216     306 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0031
   TIGR03290   3 acyqcGtctGscPs.........grr...tayrirklirkaklglkdevlsdd.dlwlcttcyecqercPrdvkitdvvkalrn 73 
                  c+ c  c+ scPs         g+     ayr  +  r++ ++ + e l+d  +l+ c t  +c++ cP+++++ +++ ++++
  MMETSP1061-20121228|5559_1 218 ECILCACCSTSCPSywwnadkylGPAvlmQAYRWIEDSRDTSTSKRLEELDDAfKLYRCHTIMNCTKVCPKHLNPGKAIAQIKK 301
                 699**********9444333333222111334444444555566555666664479*******************999998876 PP

>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       3.4   1.7e+03      65      83 ..      72      90 ..      65      90 .. 0.76
   2 ?    3.2   6.1     0.025        13      39      95 ..     214     288 ..     198     300 .. 0.65

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 3.4
   TIGR01971 65 eeekgkrrlkkyeinlgrC 83
                e+e++k +l++y ++l  C
  MMETSP1061-20121228|5559_1 72 EQENQKPYLSTYPVDLNDC 90
                5567778888999998888 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.025
   TIGR01971  39 pGeekCiaCelCakvCpaeaikvvkaee................ekgkrrlkky..einlgrCifCglCeevCPt 95 
                 +G  +Ci C  C + Cp++  + +k+                   + ++rl++      l rC    +C+ vCP+
  MMETSP1061-20121228|5559_1 214 DGMYECILCACCSTSCPSYWWNADKYLGpavlmqayrwiedsrdTSTSKRLEELddAFKLYRCHTIMNCTKVCPK 288
                 488889999999999998766655555445555555556555443333333333113556677777777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1397.26
//
Query:       MMETSP1061-20121228|5555_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 2260.31
//
Query:       MMETSP1061-20121228|5557_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-10   36.0   5.3      1e-09   35.5   3.7    1.2  1  TIGR00400 mgtE: magnesium transporter


Domain annotation for each model (and alignments):
>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   3.7   2.5e-13     1e-09     313     447 ..     200     336 ..     196     339 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 2.5e-13
   TIGR00400 313 vaLaafiPllidasGnaGaqssavvirgLakeevkvkdvlkvilreirvsilvGavlavvvavvavflqg...dllvafvvassLfvsllvaklaGgllPivlkklkl.dPalmsgPlittladvlslliylniakall 447
                  aL a++P++   sG +G q+s    r +  + v  ++    i+re+++++++G+  + v  ++a++  g    + v++ va    +   +a  +G+l P+v   l   +  + sgPlit ++d+ls l+ + ++  +l
  MMETSP1061-20121228|5557_1 200 TALVALLPIVGALSGAVGLQASVSTTRAIVGGRVTPENYASWIVRETGAALYLGLGTGAVTGLIALLVSGfafAFAVSIGVAQ--CLGTAIAGGTGSLAPVVSTALCPnNSGVWSGPLITSVQDLLSSLVVMVVSYRIL 336
                 58999**********************************************************99999887444444445555..5678899999*******99997515689**************999888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1921.76
//
Query:       MMETSP1061-20121228|5562_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-17   59.7   0.1    1.7e-15   55.2   0.0    2.1  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    1.6e-06   25.4   0.0    3.6e-06   24.2   0.0    1.5  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    5.7e-06   22.8   0.0      9e-06   22.1   0.0    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.9e-05   22.1   0.0    3.4e-05   21.3   0.0    1.5  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
     0.0011   16.2   0.0     0.0078   13.5   0.0    2.2  2  TIGR02415 23BDH: acetoin reductases
     0.0012   16.2   0.2     0.0012   16.2   0.1    1.8  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
     0.0018   15.9   0.0     0.0041   14.7   0.0    1.6  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
  ------ inclusion threshold ------
      0.017   12.6   0.0      0.035   11.6   0.0    1.5  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
       0.05   10.8   2.6      0.052   10.7   0.2    2.2  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   3.6e-18   1.7e-15       4     208 ..      88     318 ..      85     352 .. 0.72

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 3.6e-18
   TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaaksl...glpkdsy................tilkldlasldsvrkfveqf..resgr.....sldalvcnaav.ylpllkep..lfsadgyelsvatnhlghfllsnllledlkksdekdkr.liilgsvtanskelagkvpi..kadlgdlsgleaglkaaniamidgkefkaa.kaykdsklcnmltvrelhrry 208
                 + +i+tga sg g + + al+  g   v macr+  ++e aa+++    + ++ +                + + +d++sl svr f +++  r s+      +ld+l  na v yl  +k+   + sadg e++ atn +gh l+ +ll   l++sde+      i+   t+ s     k+p    +dl  l+ +    +a+ + + +++ef+     y +skl+++l vrel    
  MMETSP1061-20121228|5562_1  88 HVAIVTGANSGTGYEISLALARLG-ANVTMACRNPSRCEIAAEKIrrdSMVRNRFrnrfrnrfgagtiisiSTMTVDVSSLASVRDFCDRYlaRTSDAngvplPLDMLFLNAGVgYLGPAKNGslVLSADGIEITFATNVVGHHLMYRLLEPSLRRSDEARITpARIVQ--TSSSASYETKLPHkvATDLDTLNRM----PATTSWFAKSAEFELMlNLYGQSKLAQILWVRELTAAL 318
                 5689********************.9****************9874433544432222222223332121156899************99844444433333379*******9989988887622579*****************************987543123333..5556667778887223455555544....4444566799999965278*************997654 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   7.9e-09   3.6e-06       2      49 ..      88     135 ..      87     144 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 7.9e-09
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeag 49 
                 +va+vtGa+sG g++i+ +la+ Ga+v++   +   +e aa+++++ +
  MMETSP1061-20121228|5562_1  88 HVAIVTGANSGTGYEISLALARLGANVTMACRNPSRCEIAAEKIRRDS 135
                 69*******************************999999999987765 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0     2e-08     9e-06     411     534 ..      84     235 ..      78     269 .. 0.68

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2e-08
   TIGR02632 411 elarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava..................lkldvtdeeavkaa....faevalayGG...vdivvnnaGiavskpleete....leeWdlnldilatGyflvare 534
                  l ++va+vtG+ sG G e+++ l+  Ga v +a  +  + e  a+++  +  + + +                   +++dv +  +v+      +a  + a G    +d++  naG+    p ++ +    ++  +++++ ++ G++l+ r 
  MMETSP1061-20121228|5562_1  84 RLQGHVAIVTGANSGTGYEISLALARLGANVTMACRNPSRCEIAAEKIR-RDSMVRNRFrnrfrnrfgagtiisistMTVDVSSLASVRDFcdryLARTSDANGVplpLDMLFLNAGVGYLGPAKNGSlvlsADGIEITFATNVVGHHLMYRL 235
                 68899********************************999988887775.2222222223455555555555558888999999999886411115556666663333799999999988777766543322566778888888888887664 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   7.4e-08   3.4e-05       3      38 ..      85     120 ..      83     186 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 7.4e-08
   TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGadivgvgis 38 
                 l+G+va+vtGan+G G  i+++la+ Ga++  + ++
  MMETSP1061-20121228|5562_1  85 LQGHVAIVTGANSGTGYEISLALARLGANVTMACRN 120
                 89***************************9766543 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.7e-05    0.0078       2      46 ..      89     133 ..      88     148 .. 0.89
   2 ?   -0.5   0.0      0.32   1.5e+02     173     190 ..     349     366 ..     296     377 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.7e-05
   TIGR02415   2 valvtGaaqGiGkaiaerLakdGfavavadlneetaketakelke 46 
                 va+vtGa  G G +i+  La+ G +v++a  n+     +a++++ 
  MMETSP1061-20121228|5562_1  89 VAIVTGANSGTGYEISLALARLGANVTMACRNPSRCEIAAEKIRR 133
                 8****************************9998888877777765 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.32
   TIGR02415 173 itvnayaPGivktemree 190
                    na  PG+v t+++ +
  MMETSP1061-20121228|5562_1 349 LYANAAHPGMVATNIWGK 366
                 346888899999988865 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   2.6e-06    0.0012       1      89 [.      85     179 ..      85     268 .. 0.63
   2 ?   -2.0   0.1      0.93   4.2e+02     164     203 ..     326     363 ..     314     382 .. 0.59

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.6e-06
   TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiai....dlceplsdvvtypaatredldetaklvealGr..kvlarkadvrkleelravveegve 89 
                 l+G+va++tGa  G G   +++la+ Ga++         ce  ++ ++  +  r+ + +  +   ++G    + + ++dv +l+ +r+  ++ ++
  MMETSP1061-20121228|5562_1  85 LQGHVAIVTGANSGTGYEISLALARLGANVTMAcrnpSRCEIAAEKIRRDSMVRNRFRNRFRNRFGAGTiiSISTMTVDVSSLASVRDFCDRYLA 179
                 79**************************9864301112344444444444444444444444444444411334556677777777766655544 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.93
   TIGR03971 164 ahyaaa.khGlvgltktlanelaeygirvnsihPtsvdtam 203
                 +h aaa     v+ t++l  +   y    n+ hP  v+t++
  MMETSP1061-20121228|5562_1 326 GHAAAAaAAAAVATTRSLNPNSVLY---ANAAHPGMVATNI 363
                 4443320334455555554443333...4666666666665 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     9e-06    0.0041       1      45 [.      90     133 ..      90     157 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9e-06
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelke 45 
                 a+vtGa+ g G +i+++la+ ga+v++  r + +++e +ae+++ 
  MMETSP1061-20121228|5562_1  90 AIVTGANSGTGYEISLALARLGANVTMACR-NPSRCEIAAEKIRR 133
                 79************************9955.66667777777765 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   7.8e-05     0.035       2      38 ..      89     125 ..      88     146 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7.8e-05
   TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvapneera 38 
                 va+vtG+  G G +i+ +la+ G +v  ++++ + ++
  MMETSP1061-20121228|5562_1  89 VAIVTGANSGTGYEISLALARLGANVTMACRNPSRCE 125
                 9*************************99998644433 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00011     0.052       1      65 [.      85     149 ..      85     261 .. 0.89
   2 ?   -0.9   0.1      0.39   1.8e+02      68      89 ..     333     354 ..     320     361 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00011
   TIGR03206   1 lkdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdra 65 
                 l+++vaivtg   g g  i + +a+ ga+v++   n   +e  a++ir      + ++  + +r 
  MMETSP1061-20121228|5562_1  85 LQGHVAIVTGANSGTGYEISLALARLGANVTMACRNPSRCEIAAEKIRRDSMVRNRFRNRFRNRF 149
                 6889****************************999999999999999987766666666555555 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.39
   TIGR03206  68 daavaaaeealgpvdvlvnnag 89 
                  aa  a++++l p  vl  na 
  MMETSP1061-20121228|5562_1 333 AAAAVATTRSLNPNSVLYANAA 354
                 3444566789*******99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1831.85
//
Query:       MMETSP1061-20121228|5565_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 241.98
//
Query:       MMETSP1061-20121228|5566_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 641.95
//
Query:       MMETSP1061-20121228|5568_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1250.75
//
Query:       MMETSP1061-20121228|5568_2  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 716.51
//
Query:       MMETSP1061-20121228|5563_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.2   0.0       0.04   11.4   0.0    1.3  1  TIGR03046 PS_II_psbV2: photosystem II cytochrome PsbV2


Domain annotation for each model (and alignments):
>> TIGR03046  PS_II_psbV2: photosystem II cytochrome PsbV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.8e-06      0.04      23      72 ..      26      75 ..       9      78 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.8e-06
   TIGR03046 23 aavdkyvkqylkveepvelpldaeGelktftaedlteGkklfesncknch 72
                ++v   +    +v +p + p+ ++G   +f    l +G + +++ c  ch
  MMETSP1061-20121228|5563_1 26 STVSVTLLDEEDVVHPPHYPWRHQGYFSSFDHAALRRGYQVYREVCASCH 75
                33333444445667777899****************************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1478.28
//
Query:       MMETSP1061-20121228|5570_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1549.44
//
Query:       MMETSP1061-20121228|5564_1  [L=4537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.91    6.6   0.0        1.6    5.7   0.0    1.3  1  TIGR00341 TIGR00341: TIGR00341 family protein


Domain annotation for each model (and alignments):
>> TIGR00341  TIGR00341: TIGR00341 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0    0.0004       1.6     139     216 ..    3127    3205 ..    3123    3232 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0004
   TIGR00341  139 ligamiiAPLlgpviglavslsvgdvkLalksikklllelilvivlsliaalflvlk.eltpqilsrtevdilseivAv 216 
                  l++ m+  PL +   ++av++++ d  + +  + + ll  ++  vls i  + ++l  +  ++  s+t+v++   + Av
  MMETSP1061-20121228|5564_1 3127 LLSYMMNGPLKDRQAASAVQVALDDEYMKMLNLSHDLLRNFIPHVLSKINRVSFGLLtKQDLRNSSETNVSLARRLAAV 3205
                  56779999**********************************************98768889999*****999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (4537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.86u 0.14s 00:00:02.00 Elapsed: 00:00:00.92
# Mc/sec: 6509.07
//
Query:       MMETSP1061-20121228|5572_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 3099.47
//
Query:       MMETSP1061-20121228|5576_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 500.17
//
Query:       MMETSP1061-20121228|5578_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|5575_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   10.3   3.7       0.19    9.9   2.0    1.6  1  TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family


Domain annotation for each model (and alignments):
>> TIGR02898  spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.0   4.7e-05      0.19       5      49 ..     316     360 ..     311     369 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.7e-05
   TIGR02898   5 illllllltgCtnaekkskdnnnveeknveekaangentakdtnq 49 
                  l+l  l+t+Ctn ++++++nnn++++++  ++ ++++++k t+ 
  MMETSP1061-20121228|5575_1 316 ALVLPQLVTSCTNRDDDNNNNNNKRDHKMAGQRGGNRKKSKHTTT 360
                 56778888********99888888888887777444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2040.33
//
Query:       MMETSP1061-20121228|5579_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   12.1   0.0      0.085   11.1   0.0    1.5  1  TIGR02657 amicyanin: amicyanin


Domain annotation for each model (and alignments):
>> TIGR02657  amicyanin: amicyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.1e-05     0.085      44      82 ..     425     462 ..     414     463 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.1e-05
   TIGR02657  44 dlkgpmlkkeqayslkfteagtydyictphpfmkgkvvv 82 
                 ++ g ++ + + y l + eagtyd  ct h  ++   vv
  MMETSP1061-20121228|5579_1 425 NISGNLMEEPDFYPLSI-EAGTYDDDCTDHDHFRDCAVV 462
                 68899999999999986.79**********999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 2986.86
//
Query:       MMETSP1061-20121228|5580_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 2223.51
//
Query:       MMETSP1061-20121228|5581_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1594.43
//
Query:       MMETSP1061-20121228|5585_1  [L=1219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-10   37.1   0.1    1.5e-09   35.3   0.0    1.8  2  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0     0.064   2.6e+02     388     454 ..     231     303 ..     184     305 .. 0.69
   2 !   35.3   0.0   3.5e-13   1.5e-09     199     298 ..     810     910 ..     770     924 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.064
   TIGR01622 388 lkalaeasfvpsevnlaseclvLsNmFdp......ateeeenfdkeikdDvkeEcskkggvvhiyvdkknsaG 454
                 ++    a+f ++    +  +++++  F+p       te++ +fdk + +D   ++  + +  +  +d+++s G
  MMETSP1061-20121228|5585_1 231 NSSYDLANFGDVSTRAPFLAFLIHQRFSPhasppvTTESNIDFDKILAEDKDANALFHSQKSQLLSDTPSSYG 303
                 44444444444445556667888999999888888899999****9999999999999999999999988877 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 3.5e-13
   TIGR01622 199 KNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFe.pFGe..ielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD 298
                 +Nr++++a++   ++ n  a  kL +Gnl ++ t  +L + F   +G+  ++   ++ +  tG+s+G+GF++  + + a+e le     e+ GR +kv+ ++ 
  MMETSP1061-20121228|5585_1 810 RNRKKNNANNNVPTG-NRPAAIKLHIGNLSYQTTPSDLFDFFSrDYGRdnVLECHIPAERATGKSRGFGFVTLPE-NIAREILESGRKCEINGRILKVAESNS 910
                 577777776654333.345899********************736996448899999***************986.68*******999**********98654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.43
# Mc/sec: 3741.74
//
Query:       MMETSP1061-20121228|5589_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1304.05
//
Query:       MMETSP1061-20121228|5586_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 3070.69
//
Query:       MMETSP1061-20121228|5587_1  [L=771]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.074    8.9   0.0       0.13    8.1   0.0    1.3  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   3.2e-05      0.13      21      89 ..     168     248 ..     155     268 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 3.2e-05
   TIGR00870  21 flkaiergdlalvkrkleeaklveklnincvdrlgrsallsaaieneneelteLllkke..............egevGdalLh 89 
                 +l a++r+dla++kr  +e k ++++ +n  +r+g+s l  +a +   +++++Ll  +               + + G ++Lh
  MMETSP1061-20121228|5587_1 168 LLTAVRRRDLATLKRIAAE-KAANNSTMNACNRFGESILH-LACRKGSLDVVQLLVGEGisqplpgcdcsllvRDDYGRTVLH 248
                 5566666666666666666.44566666666666666666.666666666666666655555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (771 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 2993.05
//
Query:       MMETSP1061-20121228|5588_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   10.0   0.3      0.032    9.7   0.2    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   7.8e-06     0.032     976    1031 ..      58     132 ..      55     140 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 7.8e-06
   TIGR00927  976 seeeeeeeeeeeeeeeeeeeeeeeeee..............neeplslewpetrqkqaiy...lfllpivf..pl 1031
                  se  e++  e  ++e ee+  +e + +               ee l ++w + +q++ ++   l llp++f  pl
  MMETSP1061-20121228|5588_1   58 SESAENKVVELVDDETEEQVSNEAKADdskavapflsqgeiSEEALEMDWSDPKQQRVMFyiiLSLLPVLFliPL 132 
                  555555555533333333322222222245888999999889**********99988754222668899883344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 967.92
//
Query:       MMETSP1061-20121228|5590_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-10   36.3   0.9    4.5e-05   19.9   0.2    2.3  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    4.6e-06   24.3   0.5      0.011   13.4   0.1    2.3  2  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
     0.0028   15.3   0.2        0.1   10.1   0.0    2.2  2  TIGR01008 rpsC_E_A: ribosomal protein S3
      0.003   13.8   0.2      0.031   10.5   0.0    2.0  2  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
  ------ inclusion threshold ------
      0.023   12.9   0.4          2    6.5   0.0    2.4  2  TIGR01952 nusA_arch: NusA family KH domain protein, archaeal


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.3e-06    0.0019     557     614 ..     182     244 ..     173     252 .. 0.74
   2 !   19.9   0.2   5.5e-08   4.5e-05     555     603 ..     262     310 ..     256     333 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.3e-06
   TIGR03591 557 inkdkireviGkgGkvireiieetgakidiedd...Gtvkiaaa..dkeaaekakklieeita 614
                 ++   +++viGkgG++ir+++ ++g++id++++   G+ ++++   ++++++ ak+l++ + +
  MMETSP1061-20121228|5590_1 182 VSAVYVGRVIGKGGEMIRDLQARSGCRIDVDQNvppGQPRLITYrgTRKTIDFAKQLVRMLCQ 244
                 55667899***********************98677665554431145566666666666655 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 5.5e-08
   TIGR03591 555 ikinkdkireviGkgGkvireiieetgakidieddGtvkiaaadkeaae 603
                 + ++   ++++iG+gG++ire++++++aki+++ +G + + a++k+ + 
  MMETSP1061-20121228|5590_1 262 LVVPATSVGKIIGRGGEMIRELQSRSQAKIQVDHKGACGLDASEKQVTM 310
                 6788999*******************************99998876543 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00027      0.22       9      36 ..     187     214 ..     164     248 .. 0.63
   2 !   13.4   0.1   1.3e-05     0.011       3      61 ..     263     320 ..     261     329 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00027
   TIGR03665   9 igvliGkkgevkkeieektkvkleidse 36 
                 +g +iGk+ge+ ++++ + ++++++d++
  MMETSP1061-20121228|5590_1 187 VGRVIGKGGEMIRDLQARSGCRIDVDQN 214
                 4445555555555555555555555543 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.3e-05
   TIGR03665   3 kipkdrigvliGkkgevkkeieektkvkleidseegevkveeeeedplkvlkarevvkA 61 
                  +p   +g +iG++ge+ +e++++ ++k+++d + g+  ++++e++   + + + vvkA
  MMETSP1061-20121228|5590_1 263 VVPATSVGKIIGRGGEMIRELQSRSQAKIQVDHK-GACGLDASEKQVTMTGTEQAVVKA 320
                 5888999*************************98.777775444444444445555555 PP

>> TIGR01008  rpsC_E_A: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.019        16      48      65 ..     186     203 ..     176     215 .. 0.84
   2 !   10.1   0.0   0.00013       0.1      42      74 ..     262     294 ..     244     327 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.019
   TIGR01008  48 rpglviGrrGrrirelte 65 
                   g viG++G+ ir+l+ 
  MMETSP1061-20121228|5590_1 186 YVGRVIGKGGEMIRDLQA 203
                 5689***********986 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00013
   TIGR01008  42 viifaerpglviGrrGrrireltellkkkfgle 74 
                 +++ a+  g +iGr+G+ irel+   + k +++
  MMETSP1061-20121228|5590_1 262 LVVPATSVGKIIGRGGEMIRELQSRSQAKIQVD 294
                 57889999***************9988776665 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.024        20     589     616 ..     186     213 ..     174     216 .. 0.89
   2 !   10.5   0.0   3.7e-05     0.031     584     631 ..     263     310 ..     230     337 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.024
   TIGR02696 589 kigevigpkgkvinsiqdetgaeisied 616
                  +g vig  g +i ++q  +g  i +++
  MMETSP1061-20121228|5590_1 186 YVGRVIGKGGEMIRDLQARSGCRIDVDQ 213
                 589********************99986 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 3.7e-05
   TIGR02696 584 kipvdkigevigpkgkvinsiqdetgaeisieddgtvyigaadgdsae 631
                  +p   +g++ig  g +i ++q  + a+i +++ g+  + a++ + + 
  MMETSP1061-20121228|5590_1 263 VVPATSVGKIIGRGGEMIRELQSRSQAKIQVDHKGACGLDASEKQVTM 310
                 5899*******************************9999888766544 PP

>> TIGR01952  nusA_arch: NusA family KH domain protein, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.016        13      43      68 ..     186     211 ..     163     217 .. 0.75
   2 ?    6.5   0.0    0.0025         2      33      68 ..     258     293 ..     243     300 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.016
   TIGR01952  43 emgvAiGkgGanvkkveellgkkvel 68 
                  +g  iGkgG+ ++ ++++ g ++++
  MMETSP1061-20121228|5590_1 186 YVGRVIGKGGEMIRDLQARSGCRIDV 211
                 46778888888888888888887776 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0025
   TIGR01952  33 drvvfvvkkgemgvAiGkgGanvkkveellgkkvel 68 
                 +r  +vv + ++g  iG+gG+ +++++ + + k+++
  MMETSP1061-20121228|5590_1 258 KREFLVVPATSVGKIIGRGGEMIRELQSRSQAKIQV 293
                 57788999*******************999888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.24
# Mc/sec: 2155.82
//
Query:       MMETSP1061-20121228|5591_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-89  298.3   0.0    1.4e-89  298.0   0.0    1.0  1  TIGR00746 arcC: carbamate kinase
    2.3e-07   28.4   0.0    0.00017   19.0   0.0    2.9  2  TIGR00761 argB: acetylglutamate kinase
    0.00043   16.4   0.2     0.0071   12.4   0.0    2.0  2  TIGR01092 P5CS: delta l-pyrroline-5-carboxylate synthetase


Domain annotation for each model (and alignments):
>> TIGR00746  arcC: carbamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.0   0.0     1e-92   1.4e-89       1     307 [.      46     345 ..      46     347 .. 0.94

  Alignments for each domain:
  == domain 1    score: 298.0 bits;  conditional E-value: 1e-92
   TIGR00746   1 kkvvvaLGGnallqrgekasaeeqrknvekaakqlvklakrgyelvithGngPqvGalllqneaadsvpakPldvlgaesqgliGYllqqalkeelakeglekkvatvltqvivdekDeaFqnPtkpigpfydeeeakrlaaekgailkedagrgwRrvvpsPkPkeiveaeviktLvek..gvivissgGGGvPvvk...dgkelkGveaviDkDlasekLaeevnaDilviltdvdavyvnygkpdekkleevkveeleelakdgefaaGsmgPkveaaiefvesrgk...kaiitslekivealegkaGtvv 307
                 k++vva+GGnal++rg+ +++e++ k+ +  a++l++lak  +elv+thGngPqvG+l+l+++aa       +dvlgaes g+iGY+l+qa++ + +      + + +ltqv+vd+  eaF++Ptk++gp+y   ea++la+  g+++k  +g+++RrvvpsP P+ei+++e+iktL+++  g++ +++gGGGvPv++   + ++l GveaviDkD +++kLa+e++aD ++iltd   + +n+gkp+ ++++e+++e l+  +  g++  GsmgPkv+a i+fve   k    a ++ l+++ +++ g+ Gt +
  MMETSP1061-20121228|5591_1  46 KRLVVAVGGNALQRRGDRLTIENMLKAAAVMAPTLAELAK-ENELVLTHGNGPQVGELALERAAA------TFDVLGAESMGQIGYVLAQAMQSAGC------TAVPILTQVVVDQYSEAFKDPTKFVGPIYGSIEAQALAQSLGWTVKP-DGEYFRRVVPSPPPLEILQIEAIKTLLKHspGILPVACGGGGVPVARvpsNPNTLLGVEAVIDKDACGAKLANELDADGFIILTDGGGIWENFGKPEAREMQEATPEYLRGTK-TGQKFPGSMGPKVNALIDFVERSNKpdvWAAVGDLKDAAKIVTGEEGTFI 345
                 689************************************9.99*****************99876......59********************7777......8899*******************************************.9**************************97447899*********9863335677****************************************************9999887.99999***************977664366889****************98 PP

>> TIGR00761  argB: acetylglutamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0013       1.8       3      46 ..      49     103 ..      47     180 .. 0.75
   2 !   19.0   0.0   1.3e-07   0.00017     154     224 ..     244     317 ..     215     323 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0013
   TIGR00761   3 ViKiGGaais.........elleelakdiaklr..kegiklvivHGGgpeinell 46 
                 V+ +GG+a++         ++l++ a  +  l+  +++++lv+ HG gp++ el+
  MMETSP1061-20121228|5591_1  49 VVAVGGNALQrrgdrltieNMLKAAAVMAPTLAelAKENELVLTHGNGPQVGELA 103
                 66677777665555433333333322222222211356679*********98875 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.3e-07
   TIGR00761 154 vnaDtaAaelAaaleAekLvlLtdvaGileg...dkksliseleleeieqlikqavikgGmipKveaaleales 224
                 ++ D + a+lA+ l+A+  ++Ltd  Gi e+    +++ ++e ++e ++   + +   g m pKv+a ++ +e 
  MMETSP1061-20121228|5591_1 244 IDKDACGAKLANELDADGFIILTDGGGIWENfgkPEAREMQEATPEYLRGTKTGQKFPGSMGPKVNALIDFVER 317
                 788****************************876556678888888888888889999*********9998876 PP

>> TIGR01092  P5CS: delta l-pyrroline-5-carboxylate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.0   0.1     0.007       9.6       5      50 ..      43      91 ..      40     152 .. 0.66
   2 !   12.4   0.0   5.2e-06    0.0071     142     273 ..     215     345 ..     201     364 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.007
   TIGR01092  5 kdvkrivvkvGtavvtrkderlalGrl....asiveqlselnsdGfevil 50
                k+ kr+vv vG   + r+++rl++  +    a ++  l+el ++  e++l
  MMETSP1061-20121228|5591_1 43 KKKKRLVVAVGGNALQRRGDRLTIENMlkaaAVMAPTLAELAKEN-ELVL 91
                789******************987654222133445667776554.4444 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 5.2e-06
   TIGR01092 142 vvpvlnendavstrkapyed..ssGi..vkdndslaallalelkadllillsdveGlydgppsdddsklidifvkekhqdeitfGeksrlGrGGmeakvkaav.yaaygGvsviiasGkaaenitkvveGkkvGtlf 273
                 ++pv      v   + p +   + G+  v d d+  a+la el ad +i+l+d  G++++  ++++++ ++   +e  ++    G+k     G m  kv a + +   +  + + a+    +  +k+v G++ Gt++
  MMETSP1061-20121228|5591_1 215 ILPVACGGGGVPVARVPSNPntLLGVeaVIDKDACGAKLANELDADGFIILTDGGGIWENF-GKPEAREMQEATPEYLRGT-KTGQK---FPGSMGPKVNALIdFVERSNKPDVWAAVGDLKDAAKIVTGEE-GTFI 345
                 566666666666666665441145778899***************************9864.5555665555555555522.22333...246666666666623334555555555555555666666654.5554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.21
# Mc/sec: 2344.38
//
Query:       MMETSP1061-20121228|5593_1  [L=1085]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-97  325.1   0.0    5.1e-97  323.7   0.0    1.5  1  TIGR02063 RNase_R: ribonuclease R
      3e-75  251.6   0.0    5.2e-75  250.8   0.0    1.3  1  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
    8.5e-43  144.1   0.0    1.3e-42  143.5   0.0    1.2  1  TIGR02062 RNase_B: exoribonuclease II


Domain annotation for each model (and alignments):
>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.7   0.0  3.7e-100   5.1e-97      98     623 ..     418     966 ..     372     970 .. 0.86

  Alignments for each domain:
  == domain 1    score: 323.7 bits;  conditional E-value: 3.7e-100
   TIGR02063  98 keelkkalkgdevlvkilekekekdkaeaevikilerakkkivGtfvkeke..........................iafvepddkklkqkilldkekleeaeegdvvlveitkypeknkkaegkvveilGkkddkgidieiiirkheipse.fpeevlkeaekipeeveeeelkgRkDlrdlplvtIDgedakDlDDAvyvekkkdgnyklvVaIADVshYVkensalDkeAlkrgtSvYlvdrviPMLPekLSngiCSLnpnedrlalvvemeidkkGrvkksevyeavikskarltYeevnkilegkkkleekekaklkeelkeleelakiLkkkrkkrgaidfdskEakiildee.gkikeikvrerkeAekliEefMiaANeavaeflek.kklpliYRvHekPseekleklkeflkelglklkkgtlekiqpkalsklle..kvkgrpe.eelietllLRsmkkAkY......saeniGHFGLalekYtHFTSPIRRYpDLivHrllkkalekeeklskekeekleakleeiaehssktErradeaerdvndlkkaey 623
                 +++ +     d++ + + +  +++ k  ++v+ il+r+  ++ G ++++k                           i+++ p d k+   il+  ++  e   g+ ++v ++++p++++ + g+ ve +Gk+ +k ++ e+ +++++i +e fp +vl+     +   + +++  R Dlr+lp+++ID+   kD+DDA+++  +++gny+++V+IADV+hYV ++sa+D eA +r+tS+Ylv++ + MLP  L +++CSL+  +dr+a++v  e++ ++++ + e+ +++i+s a ltY++++ ++++ ++    + ++ +  +k l +la+ ++kkr++ ga+ + s E+k++ld+e  ++++++ ++  eA+ l+EefM+ AN +va+++ +   +  + R H +P+ +  e l + ++  g++++ +     ++k+l++ l+  +++ +p  ++l+++l  R m+ A+Y       + +  H+GLa+  YtHFTSPIRRY+D+ vHrll  a++    l    +  +++ l++++ +++++ r a+ a r  ++l +  +
  MMETSP1061-20121228|5593_1 418 PTQSELTNVPDTIAMDTDDASNNNLKPTGKVVGILRRNFASYSGSIYEKKAtgsrdelsereriafenerehadgsaICVFFPTDAKIP-PILIRTSQ-RERFLGQRIVVTMDSWPSHSSFPLGHYVETIGKAGSKDVETEVLLQQFKIAHEpFPAQVLACLPPKD--YKITMVPDRLDLRHLPVLSIDPPGCKDIDDALHCIVLPNGNYQVGVSIADVTHYVSPGSAMDLEAANRSTSTYLVNKRLDMLPALLTTDLCSLKADVDRYAFSVIWEVTPDAEILNVEFKKTIIHSIAALTYQQAQSFIDQPDNG--GN-DPQVGAVKRLASLARKFRKKRIDAGALTLASPEVKFVLDSEsLNPTDVQAYALLEANALVEEFMLLANITVAKKILRhYPTLSVLRRHPSPNRAMFEGLISKARCRGFEIDIE-----NSKRLADSLDaaQIESEPYfNKLLRILSTRCMSPAQYfcsgefRPMDWHHYGLAAPVYTHFTSPIRRYADVCVHRLLAAAINVA-PLP--PHLSSKSYLHDLCSNMNRRHRAAQLAGRASVQLHTLIF 966
                 223333333799999999988889999******************99999999999*******99999999999998888999999965.56777765.67778999******************************************9955*****98776555..5559*****************************************************************************************************************************************9963..33.567899*********************************76269****************************976553788899*****************999999999854.....4556666655113444444267**************9555544577899*********************************66.556..3456899*********************9988877666 PP

>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.8   0.0   3.8e-78   5.2e-75     112     656 ..     510    1058 ..     489    1059 .. 0.84

  Alignments for each domain:
  == domain 1    score: 250.8 bits;  conditional E-value: 3.8e-78
   TIGR00358  112 vnkakvknelkegdkvvvelkeyplkrnlakaeieqilgnnddelievkvilakheivkea.pdaveqqaaklqeeveeeakktRedLtdlalVTiDsedakDlDDAvyvkkladkgfkLvVaIADvsaYvaenseldkeAkergssvYlpefviPmlPeeLSnelCSLnpnekRlvlvCeltidakgritekelyeavikskarltYdkVsdiLedddelkeeyetlveqlkelaklsqllaekRkkrgaidlekketkvvldee.gkveeieaeerrkAekliEelmivANiaaArv.lekkkealiyrvHekpskkklqsllealaelkltlekvsaenvttrdiaalLee...ekdrpeeelletlllRslkkAey......kveplgHFglgleeYahfTSPIRrYpDlivHRlikavlakeekttdtereklqeelekiaeevsdterrareaeRdvaDwlkaeylsdkvgeeFegvissvtrf.....Glfvrldengidglikist.len.dyyvfdkeklaligkkegkvykigDrvevk..leevkleersiilel 656 
                  ++    ++e   g+ +vv +++ p ++ +  ++  + +g++  + +e +v l++ +i +e+ p++v   a    ++ +    ++R dL+ l++  iD+   kD+DDA+ +  l +++++  V IADv++Yv   s +d eA +r++s Yl++  + mlP  L  +lCSL+++++R++ +   ++  +++i + e+ +++i+s a ltY++ + ++++ d+  ++  + v  +k la l+   ++kR + ga+ l ++e k+vld e  ++++++a    +A+ l+Ee+m++ANi++A+  l++  +  + r H+ p++   +++   +++ + +  +++ e  +++ +a  L++   e ++  ++ll +l  R ++ A+y      ++    H+gl+   Y+hfTSPIRrY+D+ vHRl+ a +      +   +  ++  l++++ +++  +r a+ a R    + +  ++++   +e ++ + +v  +      ++v +++ gi+g +k +  l++    ++ ke+  ++  ++    ++ D+v+vk  + e++  er+ ++el
  MMETSP1061-20121228|5593_1  510 IRTS--QRERFLGQRIVVTMDSWPSHSSFPLGHYVETIGKAGSKDVETEVLLQQFKIAHEPfPAQV--LACLPPKDYKITMVPDRLDLRHLPVLSIDPPGCKDIDDALHCIVLPNGNYQVGVSIADVTHYVSPGSAMDLEAANRSTSTYLVNKRLDMLPALLTTDLCSLKADVDRYAFSVIWEVTPDAEILNVEFKKTIIHSIAALTYQQAQSFIDQPDNGGND--PQVGAVKRLASLARKFRKKRIDAGALTLASPEVKFVLDSEsLNPTDVQAYALLEANALVEEFMLLANITVAKKiLRHYPTLSVLRRHPSPNR---AMFEGLISKARCRGFEIDIE--NSKRLADSLDAaqiESEPYFNKLLRILSTRCMSPAQYfcsgefRPMDWHHYGLAAPVYTHFTSPIRRYADVCVHRLLAAAINVAPLPP---HLSSKSYLHDLCSNMNRRHRAAQLAGRASVQLHTLIFFANGS-KEEDAYVLEVETAeksdpSIRVMIPQYGIEGQVKLPVpLDDpKLSRIPKENKIVYN-GD-ISIQVFDKVRVKiwVREIQAYERELVIEL 1058
                  4444..5556679********************************************998514444..566677788999*****************************************************************************************************************************************9987776..899**********************************9762689***************************8615666677899******99...66777777777755555555..77777877776211345566789999999****9987333322566789*******************************99883333...346899999999999999*********999988888887654.5556666666543222338***************9974666445566555555443.33.46788899988833589*99999999987 PP

>> TIGR02062  RNase_B: exoribonuclease II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.5   0.0   9.5e-46   1.3e-42     188     643 ..     589    1055 ..     576    1058 .. 0.77

  Alignments for each domain:
  == domain 1    score: 143.5 bits;  conditional E-value: 9.5e-46
   TIGR02062  188 slredltaldfvtidsestkdlddalyieelangdlklivaiadPtayiaeeskldkaakkrgftnylPGfniPmlPrelsdelcslianevrPvlacsitiskdGnitdkieffaatikskaklvydkvsdwlekass.awqPeseeiaqqvrllaqlskarikwrkthallfkdrpdyrfel.sekgevedikaekrrianriveeamiianicaa.kvlkeklgfGifnthaGfdkkklenvvellkanga........lkvdveelatleGfcklrrelealetdyldsrirryqsfaeissepaPhfalGleeyatwtsPirkysdminhrllkavikket.....avkkPqedvkvklaekrrrnrlaerdvadwlyarlladkeaketrf..eaeivdvsraGlrvrllenGasvfiPaallhdvkeelelnqeegtvlikgelvykigdlievvl..tevreetrsiv 643 
                  + r dl +l+ ++id    kd+ddal+   l+ng++++ v+iad t y++++s +d +a++r+ + yl    + mlP  l+ +lcsl+a+  r ++    +++ d  i  ++ef  + i+s a l+y++   ++++ ++   +P++ +    v+ la l+++  k r     l   +p+ +f+l se+ + +d++a     an +vee m+ ani+ a k+l++   + +   h   +++  e + +  +  g           +d  + a +e    + + l +l+t  +     +y   +e++     h++l   +y+ +tsPir+y+d+  hrll a i+  +     + k+  +d+  +++ ++r  +la r         ++a+ + +e  +  e e  + s + +rv + + G    +  ++ +d   +l   ++e +++ +g++  ++ d ++v++   e++   r +v
  MMETSP1061-20121228|5593_1  589 D-RLDLRHLPVLSIDPPGCKDIDDALHCIVLPNGNYQVGVSIADVTHYVSPGSAMDLEAANRSTSTYLVNKRLDMLPALLTTDLCSLKADVDRYAFSVIWEVTPDAEIL-NVEFKKTIIHSIAALTYQQAQSFIDQPDNgGNDPQVGA----VKRLASLARKFRKKRIDAGALTLASPEVKFVLdSESLNPTDVQAYALLEANALVEEFMLLANITVAkKILRHYPTLSVLRRHPSPNRAMFEGLISKARCRGFeidienskRLADSLDAAQIESEPYFNKLLRILSTRCMSP--AQYFCSGEFRPMDWHHYGLAAPVYTHFTSPIRRYADVCVHRLLAAAINVAPlpphlSSKSYLHDLCSNMNRRHRAAQLAGRASVQLHTLIFFANGSKEEDAYvlEVETAEKSDPSIRVMIPQYGIEGQVKLPVPLDDP-KLSRIPKENKIVYNGDISIQVFDKVRVKIwvREIQAYERELV 1055
                  4.89*******************************************************************************************************97.79*************************98556675554....5556666665555565666677789*******55667899***********************866268999999***********9999999998888873334444331122222333333333444444444444443..4788899****************************************9876222223455668999999999999999999866655555666666666655114555566667899998888876554444433332.344445556666678888888887666542267777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1085 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.17s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 3330.42
//
Query:       MMETSP1061-20121228|5592_1  [L=855]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       371  (0.0904437); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.19s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 2821.27
//
Query:       MMETSP1061-20121228|5595_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.1   0.3       0.35    8.0   0.0    3.2  3  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
  ------ inclusion threshold ------
      0.057    9.2   0.0      0.084    8.6   0.0    1.2  1  TIGR03480 HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00017      0.35       2      16 ..      92     106 ..      91     110 .. 0.86
   2 ?    0.9   0.0     0.026        54      22      48 ..     146     172 ..     143     186 .. 0.86
   3 !    6.1   0.0   0.00065       1.3      34      75 ..     188     229 ..     183     244 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00017
   TIGR01258   2 klvlvrhGeseWnke 16 
                  +v++rhGes Wn++
  MMETSP1061-20121228|5595_1  92 TVVFLRHGESTWNDT 106
                 68***********75 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.026
   TIGR01258  22 WvdvelsekGkeeakeagkllkeekle 48 
                 ++d  ls+kG ++a+  +k l+e + +
  MMETSP1061-20121228|5595_1 146 FFDSPLSAKGIQQAEGVAKFLRETDSK 172
                 46999****************998766 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.00065
   TIGR01258  34 eakeagkllkeeklefdvaytsllkraiktlnivldeldqlw 75 
                 ea+ +  ++ e+  +  v+ +s l+rai+t+ i++++     
  MMETSP1061-20121228|5595_1 188 EAEDTNDAVGESASDKCVLVSSNLRRAISTCAIAMKDRLDRK 229
                 7778888888888999999*************9997644444 PP

>> TIGR03480  HpnN: hopanoid biosynthesis associated RND transporter like protein HpnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   4.1e-05     0.084       5      77 ..      20      92 ..      17     115 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 4.1e-05
   TIGR03480  5 lvgvsvrhaalvlavallltalsviytverlevnTdtskllskdlpfrkderafekaFPqdeetivvviegkt 77
                + ++ ++++++v  +  +lt   ++ ++ +l vnT +  +lskd +++k ++  ++ F +d++   +v+  kt
  MMETSP1061-20121228|5595_1 20 WLAANITRPLIVATLLCALTNPKAAHAKLKLIVNTFRYLVLSKDKKWKKPKDDPASFFSKDNNGEYIVLGKKT 92
                6777788999999999999999999999*******************************99998888886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1707.34
//
Query:       MMETSP1061-20121228|5596_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       346  (0.0843491); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.26s 00:00:00.59 Elapsed: 00:00:00.30
# Mc/sec: 2463.80
//
Query:       MMETSP1061-20121228|5600_1  [L=711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-40  134.7   0.0    4.1e-34  116.1   0.2    2.1  2  TIGR02715 amido_AtzE: amidohydrolase, AtzE family
    8.8e-37  124.7   0.0      4e-26   89.6   0.1    2.9  3  TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
    1.8e-31  107.1   0.1    1.9e-25   87.2   0.8    2.1  2  TIGR02713 allophanate_hyd: allophanate hydrolase


Domain annotation for each model (and alignments):
>> TIGR02715  amido_AtzE: amidohydrolase, AtzE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.2     3e-37   4.1e-34       6     222 ..     205     416 ..     200     438 .. 0.92
   2 !   16.4   0.0   5.4e-07   0.00074     318     445 ..     545     677 ..     474     682 .. 0.75

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 3e-37
   TIGR02715   6 akavrsgkvsaravaeaalarikaadellnaftavtaeralaeaaridaelaaGkelgalagvPfavknlfdvaGlttlaGakinaelaPakrdatlvqrlkaaGavlvGalnmdeyaygfttenahyGatrnPhdltriaGGssGGsaaavaaglvplslGsdtnGsirvPaslCGvfGlkPtyGrlsrrgvfpfvesldhvGPlarsvedlalvy 222
                  k  rsg ++ ++v+e+ ++   ++ + l+af+a+ ++ ++ +a+  d +  +G +l+   gvP avk+   v Gl    G+++  e      d +l+  lk+aGa++vG   m e      + nah+    n  d++  +GGss Gsa a+++glvp+++G d  Gsir+Pa++ G+fGl Pt+Gr+  + +   ++ + + GPl  +  d+al +
  MMETSP1061-20121228|5600_1 205 HKVYRSGAATPTEVMERWIDGAVHHLSHLKAFAALSPDLIREQAKESDRRWKSGAPLSVWDGVPVAVKDQSPVTGLRVCEGSSVCYE----GDDDILITSLKRAGAIVVGLTVMTEGGVSPLGYNAHFDGPFNAYDTDYYSGGSSSGSAVAISSGLVPMAVGWDGGGSIRIPAAMSGLFGLAPTFGRVVFAESKSGSTNV-KAGPLGATLVDVALGH 416
                 567789999999********99999**********************************************************9887....5799********************************9999*********************************************************999998877776.5699999999988755 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 5.4e-07
   TIGR02715 318 krpqdfdPasrdrllaGallPaalvaqaqrfrrvfrdkvre.lf..ervdvllaPatpisapkigqetleldgvelsvranlGiftqPisfiglPvlavPv..krpeklPiGvqliaaPwredlllrvaavle 445
                 +++++ +  +   ++ G  + a+ + +a   r++  + +re lf  + +d +l+Pa  +  pk  +   +  + + ++  ++  +     f+glP l vPv  ++  klPiG q++   w e+ ll+++  +e
  MMETSP1061-20121228|5600_1 545 NSSHKLEANTEIIVILGRCITANEILAAETIRTFAIRYFREyLFgsKGLDAILSPAVGTKVPKTPRGYRHSGESNSALVYEVMKYVPTANFLGLPGLVVPVgyEADTKLPIGFQFLGDAWTESTLLKLGRLVE 677
                 555556666666667788888888888888877766666653553356899999999999999988877777777777777778888899*******99993234567*******************998766 PP

>> TIGR00132  gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.1     3e-29     4e-26      13     185 ..     216     388 ..     205     421 .. 0.88
   2 ?    1.0   0.0     0.022        29     244     291 ..     475     522 ..     461     535 .. 0.84
   3 !   30.0   0.0   3.4e-11   4.6e-08     364     462 ..     571     678 ..     560     681 .. 0.78

  Alignments for each domain:
  == domain 1    score: 89.6 bits;  conditional E-value: 3e-29
   TIGR00132  13 kevleeilerieavkdkinaflevtkekalkkakkldkkva..ke.kklagipiavKdniavkdiettcaSkiLenyvspydatVverlkeagaliiGktNlDEFamGsstetSafgvtknPeneervpGGSsgGsaaavaadlvplalgsDTGgSiRqPAsfcgvvGlKPtYGlv 185
                 +ev+e+ ++   ++ ++++af +++++   ++ak++d++ +     +   g+p+avKd   v ++++  +S +   y +  d   ++ lk+aga+++G t + E ++   + +  f    n  ++++  GGSs+Gsa a++ +lvp+a+g D GgSiR PA+++g  Gl Pt+G+v
  MMETSP1061-20121228|5600_1 216 TEVMERWIDGAVHHLSHLKAFAALSPDLIREQAKESDRRWKsgAPlSVWDGVPVAVKDQSPVTGLRVCEGSSVC--YEGD-DDILITSLKRAGAIVVGLTVMTEGGVSPLGYNAHFDGPFNAYDTDYYSGGSSSGSAVAISSGLVPMAVGWDGGGSIRIPAAMSGLFGLAPTFGRV 388
                 566677777667777889********************998643335778******************999986..5554.778999***************************************************************************************99 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.022
   TIGR00132 244 kglkvgvvkelseesldkevkekfeklleklee.lgaeivevslpsvkl 291
                  g ++gv  +++++ +d ev +k  ++++ lee lga+iv++ +p+++ 
  MMETSP1061-20121228|5600_1 475 TGTRLGVFWDHFKH-TDPEVYQKSLEVVRYLEEdLGATIVNITVPYLRE 522
                 6789*********9.9***************7538********998765 PP

  == domain 3    score: 30.0 bits;  conditional E-value: 3.4e-11
   TIGR00132 364 kAqkvrtliidefeklf...eevDvivspta....ptlafklgekaedplemylsDvlt.vp.anlaGlpaisvPlgkke.kglpiGlqiigkafddkkllsvakaleq 462
                  A+ +rt  i+ f++ +   + +D i+sp++    p+++   +++ e + + ++++v++ vp an+ Glp+++vP+g +    lpiG q+ g a+ +++ll++++ +e+
  MMETSP1061-20121228|5600_1 571 AAETIRTFAIRYFREYLfgsKGLDAILSPAVgtkvPKTPRGYRHSGE-SNSALVYEVMKyVPtANFLGLPGLVVPVGYEAdTKLPIGFQFLGDAWTESTLLKLGRLVEE 678
                 6889999999999886668899*******972111334444444444.7788888888634449************9876478********************999987 PP

>> TIGR02713  allophanate_hyd: allophanate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.2   0.8   1.4e-28   1.9e-25       9     158 ..     240     388 ..     235     394 .. 0.90
   2 !   16.6   0.0   3.5e-07   0.00048     249     409 ..     508     676 ..     472     693 .. 0.74

  Alignments for each domain:
  == domain 1    score: 87.2 bits;  conditional E-value: 1.4e-28
   TIGR02713   9 seeeleeelaaleerkadpeelPLy.GvpfavkdniDvaglpttaacPafaylpeedatvvaklraaGaivvGktnlDqFAtGLvGtRsPygavrnafdeeyisGGsssGsavavarGlvsfaLGtDtAGsGRvPAalnnlvGlkptkGlv 158
                 s + ++e++++ ++r ++ + l ++ Gvp+avkd   v+gl    +  +  y  ++d   ++ l+ aGaivvG t +        G  + +  + na+d +y sGGsssGsava+++Glv++a+G D  Gs R+PAa+ +l Gl pt G v
  MMETSP1061-20121228|5600_1 240 SPDLIREQAKESDRRWKSGAPLSVWdGVPVAVKDQSPVTGLRVCEG-SSVCYEGDDD-ILITSLKRAGAIVVGLTVMTEGGVSPLGYNAHFDGPFNAYDTDYYSGGSSSGSAVAISSGLVPMAVGWDGGGSIRIPAAMSGLFGLAPTFGRV 388
                 56678888999888877777666667***************98665.5678887655.78999****************99999*****************************************************************87 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 3.5e-07
   TIGR02713 249 lgvevveidlaplleaaklLYegpwvaERyaavkelveakpdaldpvvreiiksaeklsaadafeaeyrlaelkrkaeall...asvdvllvPtapli.ptieevaadPvtlnaelGt....ytnfvnLldlaavAvPagfrsdg.lPfgvtliapafkdaalaelakrl 409
                 lg+++v+i +  l e+ +       v+E  ++ +  + +++++l+ +++ i+  ++ ++a ++++ae  ++   r  ++ l   +++d++l P+++++ p++    +   + n++l +    y    n l l ++ vP+g+ +d  lP+g  +++ a+++++l++l++  
  MMETSP1061-20121228|5600_1 508 LGATIVNITVPYLREI-HFSHAMKIVSEFGKTWEGPFYNSSHKLEANTEIIVILGRCITANEILAAETIRTFAIRYFREYLfgsKGLDAILSPAVGTKvPKTPRGYRHSGESNSALVYevmkYVPTANFLGLPGLVVPVGYEADTkLPIGFQFLGDAWTESTLLKLGRLV 676
                 4566666655444443.4445556677777777666667788899999999999999999999999887776666555554333679999999998752455566667778888775333349999******************99********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.22s 00:00:00.50 Elapsed: 00:00:00.26
# Mc/sec: 3609.39
//
Query:       MMETSP1061-20121228|5597_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.22s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 3101.74
//
Query:       MMETSP1061-20121228|5604_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1811.85
//
Query:       MMETSP1061-20121228|5602_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.22
# Mc/sec: 3317.73
//
Query:       MMETSP1061-20121228|5605_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-05   20.5   0.1    0.00047   17.6   0.0    2.3  1  TIGR00995 3a0901s06TIC22: chloroplast protein import component, Tic22 family


Domain annotation for each model (and alignments):
>> TIGR00995  3a0901s06TIC22: chloroplast protein import component, Tic22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.1e-07   0.00047     152     240 ..     162     248 ..      23     258 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.1e-07
   TIGR00995 152 lafrflPdPvqikaalelkaankesfdGvPvfqselLvvkkknkryiPvylskedieqelskfkreskavadsqvidvgsledvlkkle 240
                  ++r +P  + + +a+e+    + s   vP+f ++ L         +P++l+k+d     +++++++ +  +  +i   +l + l  +e
  MMETSP1061-20121228|5605_1 162 PGYRLIPSKASVDQAKEFD--MEVSESDVPLFIADRLAFASTKGAQLPLFLNKDDCITSYKRLRQAKSSLPEQPNIRTTTLLETLISME 248
                 689***************9..5556678*************************************999998888888888777666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.34
# Mc/sec: 1071.44
//
Query:       MMETSP1061-20121228|5603_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 3010.20
//
Query:       MMETSP1061-20121228|5601_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-198  657.2   0.0   2.4e-198  657.0   0.0    1.0  1  TIGR01793 cit_synth_euk: citrate (Si)-synthase, eukaryotic
    1.2e-41  140.5   0.0    1.8e-41  140.0   0.0    1.1  1  TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II
    5.8e-32  108.7   0.0    8.3e-32  108.2   0.0    1.1  1  TIGR01798 cit_synth_I: citrate (Si)-synthase
    0.00064   17.7   0.1       0.24    9.3   0.0    3.1  3  TIGR02841 spore_YyaC: putative sporulation protein YyaC
     0.0033   14.8   0.0     0.0064   13.8   0.0    1.4  1  TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase


Domain annotation for each model (and alignments):
>> TIGR01793  cit_synth_euk: citrate (Si)-synthase, eukaryotic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  657.0   0.0  2.9e-201  2.4e-198       3     427 .]      27     456 ..      25     456 .. 0.97

  Alignments for each domain:
  == domain 1    score: 657.0 bits;  conditional E-value: 2.9e-201
   TIGR01793   3 dlkevlkekipeeqekvkklrkehgkkvvgnvtvdmvyggmrgvkglvwetsvldpeegirfrglsipecqkllpk...akggeeplpegllwllltgevpseeqvaalsaelaaradlpkfvvklidalpstlhpmaqfaaavaaleveskfakayakgiakkkyweytyedsldliaklptvaakiyrnlykdgkaasidkkkdysanlasmlgyddkslaelmrlyltihsdheggnvsahtshlvgsalsdpylslaaalnglagplhglanqevlvflkevvkev...genlteeqlkdyvwktlnsgkvvpgyghavlrktdpryesqrefalkklpddplfklvsqlykivpgiltekgkvknpypnvdahsgvllqyyglteasyytvlfgvsralgvlsqliidralglplerpksvsteal 427
                  l+e+l+ ++pe+q+ +  l+kehg++v+g+vt+d+ +gg+r+vk+++wets ldp egirfrgl+ipecq +lp      g +epl e+llwlllt evp++eqv++l+ael++ra+lp++ ++li++lp+ +hpm+q+++++ a ++es+fakaya g+ k++y +y+ ed l +ia lp +aa+iyrn+y dg +   d ++dys n+++mlgydd+s+ elmrlyl ih+dheggn sah++hlvgs+lsdpyls+a +ln lagplhglanqevl+++++++++    g+ +t e + ++ w+tln+ kv+pgyghavlrktdpry++qrefalk++pdd+lf++v ++y+++p il e+gkv npypnvd+hsgvll +yg+t+ +yytvlfgvsra+g lsql +dralglplerpksv+ e+l
  MMETSP1061-20121228|5601_1  27 TLHETLAAQVPEKQKSLAALKKEHGSQVIGEVTIDQCIGGARSVKCMLWETSNLDPAEGIRFRGLTIPECQAVLPTysgVTGDGEPLLESLLWLLLTSEVPTKEQVDSLTAELHSRAELPEHAKNLINSLPKDMHPMTQLSIGLSACQTESNFAKAYAEGVPKTDYHHYALEDILGVIAVLPEIAAMIYRNVYFDGVV-NKDTSLDYSGNFCRMLGYDDPSFDELMRLYLCIHTDHEGGNASAHATHLVGSTLSDPYLSYAGGLNALAGPLHGLANQEVLKWIQDLKAKFeseGKPVTAETITEFAWETLNAKKVIPGYGHAVLRKTDPRYTCQREFALKHMPDDELFNVVNTIYEVMPDILKEHGKVANPYPNVDSHSGVLLWHYGFTQFQYYTVLFGVSRAVGALSQLYWDRALGLPLERPKSVTPEWL 456
                 799************************************************************************722256789****************************************************************************************************************65.679***********************************************************************************99765334899***********************************************************************************************************************************9986 PP

>> TIGR01800  cit_synth_II: 2-methylcitrate synthase/citrate synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.0   2.2e-44   1.8e-41      40     337 ..     115     434 ..     110     449 .. 0.79

  Alignments for each domain:
  == domain 1    score: 140.0 bits;  conditional E-value: 2.2e-44
   TIGR01800  40 EEvaylllygkLPtkeeLekfktelakerelpdevielleslpkeahpmavlrtavsalgaldk...e.kekv..tkeeareiak..rllaklptivaavyriregeeivapkedlsiaanFLymltGeepskeeekaldiaLiLyaeHe.lnAstfaarviastlsDiysaivaaigaLkGplHGGAneavlkmleeie.......dp...eeaeeyikkklenkekimGfGHrvYktaDpRakilkela.kklsakkgesklyeiaerlekvvee.......ekgllpnvDfysasvyaslgipv.elftpiFalsRvsGWtah 337
                 E +++lll +++Ptke+++++ +el++++elp++ ++l++slpk++hpm+ l  + sa  +  +     +e v  t  ++++  +   ++a lp i a++yr    + +v+ +++l +++nF +ml  ++ps    + +   L ++++He  nAs  a+  ++stlsD y +  +++ aL GplHG An++vlk +++++       +p   e+  e+  ++l++k+ i G+GH+v +++DpR ++ +e+a k++     + +l+++ + + +v+ +         + +pnvD +s++   + g+ + +++t +F +sR  G  ++
  MMETSP1061-20121228|5601_1 115 ESLLWLLLTSEVPTKEQVDSLTAELHSRAELPEHAKNLINSLPKDMHPMTQLSIGLSACQTESNfakAyAEGVpkTDYHHYALEDilGVIAVLPEIAAMIYRNVYFDGVVNKDTSLDYSGNFCRMLGYDDPS--FDELMRLYLCIHTDHEgGNASAHATHLVGSTLSDPYLSYAGGLNALAGPLHGLANQEVLKWIQDLKakfesegKPvtaETITEFAWETLNAKKVIPGYGHAVLRKTDPRYTCQREFAlKHMP----DDELFNVVNTIYEVMPDilkehgkVANPYPNVDSHSGVLLWHYGFTQfQYYTVLFGVSRAVGALSQ 434
                 7899************************************************99999876544311022222310333333333222479************************************888776..667999*********946*******************************************999872222222221113334455688999***********************99834444....44555555555555544444344344558***************97637**********9997665 PP

>> TIGR01798  cit_synth_I: citrate (Si)-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0     1e-34   8.3e-32      76     385 ..     118     434 ..     109     451 .. 0.80

  Alignments for each domain:
  == domain 1    score: 108.2 bits;  conditional E-value: 1e-34
   TIGR01798  76 cylllkgelptkeqkeefdekvkehtmvheqltrffkgfrrdahpmavlvgvvga......lsafyhdaldiedpkereiaai.rliaklptlaalsykysigqpfvypkndlsyaenflkmlfatpceeykvnpvlaraldrifilhadheq.naststvrlagssganpfaciaagiaalwgpahgganeavlkmleeigs..........vekiaefikkvkdkndevrlmgfghrvyknydprakvlketceevlkelgkeddpllklalelekia...ledeyfiekklypnvdfysgivlkalgipt.emftvifalartvgwisq 385
                  +lll  e+ptkeq + + +++++ + + e  ++++++  +d hpm+ l   + a      ++  y + +  +d ++  +  i  +ia lp +aa+ y+  +   +v    +l+y++nf +ml    ++    +p + + +   + +h+dhe  nas+ +  l gs+ ++p+ + a g+ al gp hg an+ vlk ++++             e i+ef  ++   n +  + g+gh v +  dpr +  +e     lk++   dd l+++   + ++    l+++  +    ypnvd +sg++l   g+   + +tv+f ++r+vg +sq
  MMETSP1061-20121228|5601_1 118 LWLLLTSEVPTKEQVDSLTAELHSRAELPEHAKNLINSLPKDMHPMTQLSIGLSAcqtesnFAKAYAEGVPKTDYHHYALEDIlGVIAVLPEIAAMIYRNVYFDGVVNKDTSLDYSGNFCRMLG---YD----DPSFDELMRLYLCIHTDHEGgNASAHATHLVGSTLSDPYLSYAGGLNALAGPLHGLANQEVLKWIQDLKAkfesegkpvtAETITEFAWETL--NAKKVIPGYGHAVLRKTDPRYTCQREFA---LKHM--PDDELFNVVNTIYEVMpdiLKEHGKV-ANPYPNVDSHSGVLLWHYGFTQfQYYTVLFGVSRAVGALSQ 434
                 589*******************************************9764333321111114556889999999999999765279************************************84...44....688889999999*******559*****************************************99987531111111111344555554443..3345678************987766654...4554..58889999888877642224444444.467****************9864899************998 PP

>> TIGR02841  spore_YyaC: putative sporulation protein YyaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0003      0.24      32      94 ..      20      86 ..       8      97 .. 0.84
   2 ?   -0.2   0.0      0.26   2.2e+02      40      71 ..     143     173 ..     129     233 .. 0.59
   3 ?    4.0   0.0     0.013        11       5      59 ..     254     311 ..     251     316 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0003
   TIGR02841 32 nklkvyGtleepvhak..nleeklkeikkkfkkpfi..iavdaclGkvksvGkiliekkplkPGaav 94
                ++++   tl+e++ a+  + +++l+ +kk++ +  i  +++d c+G ++sv  +l e++ l P  ++
  MMETSP1061-20121228|5601_1 20 QNFRSVTTLHETLAAQvpEKQKSLAALKKEHGSQVIgeVTIDQCIGGARSVKCMLWETSNLDPAEGI 86
                5667778899988887224567899******999998899********************9998876 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.26
   TIGR02841  40 leepvhaknleeklkeikkkfkkpfiiavdac 71 
                  e p haknl ++l +  +   + + i + ac
  MMETSP1061-20121228|5601_1 143 AELPEHAKNLINSLPKDMH-PMTQLSIGLSAC 173
                 5667788888777754222.222344444444 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.013
   TIGR02841   5 llciGtdrstGdal...GPlvGeklkklkknklkvyGtleepvhaknleeklkeikkk 59 
                  lci td   G+a      lvG++l+         + +l+ p+h    +e lk+i+  
  MMETSP1061-20121228|5601_1 254 YLCIHTDHEGGNASahaTHLVGSTLSDPYLSYAGGLNALAGPLHGLANQEVLKWIQDL 311
                 69********9986222579*************99******************99865 PP

>> TIGR03328  salvage_mtnB: methylthioribulose-1-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   7.8e-06    0.0064     127     169 ..      15      57 ..       5      63 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.8e-06
   TIGR03328 127 kvPiieNtqdiaeLaeevekaleespealgvLirgHGlyvwGk 169
                 kvPi +N+ ++ +L+e++++++ e++++l++L ++HG  v G+
  MMETSP1061-20121228|5601_1  15 KVPIGQNFRSVTTLHETLAAQVPEKQKSLAALKKEHGSQVIGE 57 
                 79***********************************999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2182.53
//
Query:       MMETSP1061-20121228|5606_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   10.9  10.2       0.03   10.6   7.1    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        2.7    4.4   8.0        3.8    3.9   5.6    1.2  1  TIGR00939 2a57: nucleoside Transporter
        9.6    2.0   9.1         12    1.6   6.3    1.2  1  TIGR00930 2a30: K-Cl cotransporter


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   7.1   2.2e-05      0.03     310     398 ..     141     223 ..      95     258 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.2e-05
   TIGR02442 310 rrrkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvklla 398
                  +r +  +    +++++e++++e  +++++e++++eke+  s++++e+  +k+d+k+     +a++ ++ a+++  +++gk+++vk+++
  MMETSP1061-20121228|5606_1 141 EKRIAERD----KQQQAEKEQKELAEKKKQEQQEKEKEAAASREKKETPKDKNDDKDVS--IDAKKVKKIAKKTLKKAEGKSMAVKAMR 223
                 22222222....22222222222222222222222333333333333333333433333..3333333335667777777777777654 PP

>> TIGR00939  2a57: nucleoside Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   5.6    0.0028       3.8     209     277 ..     147     218 ..     109     222 .. 0.55

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0028
   TIGR00939 209 ldkeaqedetkkelrskaee.ndepakgdkeskteelsaekepeske..eeevelktsvftvlkkvklllla 277
                  dk++q ++ +kel +k+ + ++e +k+  +s +++ + + ++++k+   + +++k++ +++lkk     +a
  MMETSP1061-20121228|5606_1 147 RDKQQQAEKEQKELAEKKKQeQQEKEKEAAASREKKETPKDKNDDKDvsIDAKKVKKIAKKTLKKAEGKSMA 218
                 223344444444444444430333333333333333333333333331135666888888888887666655 PP

>> TIGR00930  2a30: K-Cl cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   6.3    0.0091        12     790     879 ..     124     217 ..      89     253 .. 0.57

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0091
   TIGR00930 790 eekkdlakllsklRleaevivvlmdisak...ekkesveafe.emlkklrlekeekereakdrklkeekpkkitdkelqsnkkklyrqvrLnev 879
                 ++kk + ++ s lR e e+   + d +++   e+ke  e+ + e ++k ++  +++e++ + +  +++k+++i+ k+ ++ +kk+ ++   +++
  MMETSP1061-20121228|5606_1 124 HNKKIVDEIWSCLRQEREKRIAERDKQQQaekEQKELAEKKKqEQQEKEKEAAASREKKETPKDKNDDKDVSIDAKKVKKIAKKTLKKAEGKSM 217
                 4556666666666666666666666555532233333322220222333333333343333335566666666666666666666555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       850  (0.207216); expected 82.0 (0.02)
Passed bias filter:                      211  (0.0514383); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 896.85
//
Query:       MMETSP1061-20121228|5608_1  [L=933]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       322  (0.0784983); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.33
# Mc/sec: 3731.69
//
Query:       MMETSP1061-20121228|5609_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1598.53
//
Query:       MMETSP1061-20121228|5612_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 1427.44
//
Query:       MMETSP1061-20121228|5607_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.6e-109  362.1   6.2   6.8e-109  361.9   4.3    1.0  1  TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
    4.2e-34  116.3   0.0    5.5e-34  115.9   0.0    1.1  1  TIGR00501 met_pdase_II: methionine aminopeptidase, type II
    1.3e-14   52.1   0.4    4.2e-14   50.5   0.2    1.8  2  TIGR00500 met_pdase_I: methionine aminopeptidase, type I


Domain annotation for each model (and alignments):
>> TIGR00495  crvDNA_42K: DNA-binding protein, 42 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.9   4.3  4.9e-112  6.8e-109       4     378 ..      11     396 ..       8     401 .] 0.88

  Alignments for each domain:
  == domain 1    score: 361.9 bits;  conditional E-value: 4.9e-112
   TIGR00495   4 keeadekavslsnpevvtkykiageiankvlkkvvekcksgakvvdiCekGdelikeetakvykkk...kelekGiafPtavsvnnvvghfsPlksde....lvlkeGdvvkidlGvhidGfialvahtivig.a.eesvtGrkadvia...aaslaleaalrlvkPGkkntevteviekvaasydcksveGvlshqlkrevidGekvvlsk...psdsqkkevdkvefeenevyavdilvstgeGkakeederttiykkdedktyklklkasrkviseikkrfsalPftlrnledekrarlGlvecvehkllqpyevlydkeGeivaqfkftvlllpnGsirltsselkedlvkselevedaeikallaspikkkknkkkakkasaate 378
                 +e ++e++ +lsn  v tky+ a++i+n  l+ +v+++++gakv+d+C+ G  +++++++k+y+kk   k +++G+afP +vsvn+vv+  sPl+  e      lk Gdvvk dlG+h+dG+ia++aht+v+  + +++   + a+  +   a+  a+ +a  ++  Gk+n +vt+++++va++y++++++ v  hq+kr+v+dG k v  k   p+d ++++v +++fe+ evyavd+ +stg+Gka+    rtt++k++ +++y lk+kasr+v  e++k+++++Pft+r+l+d + a+lG++ecv h+ll+py+ l+d +G+ v +fk tvlllp G+ r+t+ +l+ d+ k ++e +++ +k l +  i   + kk+akka++ ++
  MMETSP1061-20121228|5607_1  11 EEVEEEEVTDLSNSDVCTKYQEASKIVNLTLEGLVSQTVVGAKVLDLCKFGTTVMEAAASKLYTKKvngKAIDRGVAFPVCVSVNDVVCNCSPLNDPEpeatAPLKAGDVVKFDLGCHLDGYIAVAAHTVVVKeTaDSPAPPEDAELAKcavATYNAMLVAAATIAAGKNNSDVTKAVDRVAKAYGVTPISSVRMHQMKRYVLDGVKEVALKeplPEDPEEEKVPDCTFEQAEVYAVDVAMSTGDGKARPGTMRTTVFKRNVEQQYLLKVKASRQVLAEVDKKYPTMPFTMRDLSDVRAAKLGINECVAHGLLTPYPSLHDYSGK-VCHFKCTVLLLPSGTARVTGLKLP-DYFKTDVEADEETLKILAE--IAEAEAKKAAKKAAKKKN 396
                 555666667******************************************************99544599***********************9877777678****************************9654666666666665511145567778999********************************************997663334666789999**********************************************************************99**************************97.89*********************9.9*******76666665544..334446777777775444 PP

>> TIGR00501  met_pdase_II: methionine aminopeptidase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.9   0.0     4e-37   5.5e-34       5     289 ..      27     349 ..      23     355 .. 0.78

  Alignments for each domain:
  == domain 1    score: 115.9 bits;  conditional E-value: 4e-37
   TIGR00501   5 aeklikaGkilkkvrreaaekivpGlkllevaefvenrirelGae...............PafPanisinevaahftp....kagdetvlkdedvvkldlGahvdGyiadtaitvdlddq........ykellk...aakdaletaikeiradvevgeiGkvieeviesygvkPisnLtGhslaryrlhagksipnvk......erd...ttkleeGevlaiepfatdGvGlvtdgg.eveiykllaerpvr..lksarklLkkieenyktLPfakrylekledeklllalnkLvregviqdypvLkeksgslvaqfehtilveedg 289
                   k+ +a ki++   +  + + v G k+l++ +f   +++e  a                 afP+ +s+n+v     p    +++    lk +dvvk dlG h+dGyia +a tv ++++          el k   a+ +a+  a  +i a+ + +++ k+++ v ++ygv Pis +  h ++ry l + k +   +      e++     ++e+ ev a++   ++G G+ + g+ +++++k+  e++    +k +r++L +++++y+t+Pf+ r l+ +  +kl   +n+ v +g++ +yp L++ sg  v+ f  t+l+   g
  MMETSP1061-20121228|5607_1  27 CTKYQEASKIVNLTLEGLVSQTVVGAKVLDLCKFG-TTVMEAAASklytkkvngkaidrgVAFPVCVSVNDVVCNCSPlndpEPEATAPLKAGDVVKFDLGCHLDGYIAVAAHTVVVKETadspappeDAELAKcavATYNAMLVAAATIAAGKNNSDVTKAVDRVAKAYGVTPISSVRMHQMKRYVLDGVKEVALKEplpedpEEEkvpDCTFEQAEVYAVDVAMSTGDGKARPGTmRTTVFKRNVEQQYLlkVKASRQVLAEVDKKYPTMPFTMRDLSDVRAAKL--GINECVAHGLLTPYPSLHDYSGK-VCHFKCTVLLLPSG 349
                 5678899999999999999999*********9984.4445554443555566666655544**********999877521114455677***************************99886777777533444311144555555567788888999*********************************999854321111112221224689******************9987527899**99997754238899*************************9665..9******************9986.67899999886555 PP

>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.2   3.1e-17   4.2e-14       7     166 ..      25     205 ..      20     215 .. 0.81
   2 ?   -2.2   0.0      0.37     5e+02      69      78 ..     313     322 ..     308     330 .. 0.85

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 3.1e-17
   TIGR00500   7 eeieklrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgyk......gfpgsvCiSvNevviHGip......d.kkvlkdgDivniDvgveldGyygDtaktllvgkv........seeaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsvvkeytG 166
                 +   k ++a+++v+ +le l ++   G ++ +l k  ++++e    k  +k+ +      g    vC+SvN+vv+   p      +    lk+gD+v+ D+g +ldGy + +a t++v ++        ++e  k   at +a+  a ++i +gk+  +++ka+++ a+++g + + ++  
  MMETSP1061-20121228|5607_1  25 DVCTKYQEASKIVNLTLEGLVSQTVVGAKVLDLCKFGTTVMEAAASKLYTKKVNgkaidrGVAFPVCVSVNDVVCNCSPlndpepEaTAPLKAGDVVKFDLGCHLDGYIAVAAHTVVVKETadspappeDAELAKCAVATYNAMLVAAATIAAGKNNSDVTKAVDRVAKAYGVTPISSVRM 205
                 55578899**********************************999999888888777777455569*********987533222244567****************************9842222222233455666678999******************************99977655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.37
   TIGR00500  69 SvNevviHGi 78 
                  +Ne v+HG+
  MMETSP1061-20121228|5607_1 313 GINECVAHGL 322
                 69*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 2035.68
//
Query:       MMETSP1061-20121228|5610_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-08   32.3   0.1    1.6e-08   32.3   0.0    2.0  2  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
  ------ inclusion threshold ------
        4.3    5.6  14.6       0.99    7.7   5.0    2.9  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.9     0.081   1.7e+02      10      40 ..     100     124 ..      92     133 .. 0.33
   2 !   32.3   0.0   7.9e-12   1.6e-08      34      94 ..     221     280 ..     204     297 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.081
   TIGR03789  10 aalltssvaavalqnqpalqttqekeaqead 40 
                 aa +t+++ a+a +++ +++tt ++     +
  MMETSP1061-20121228|5610_1 100 AAAATGTATATA-ATTGTTTTTTTT-----T 124
                 222222222222.222222222222.....1 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 7.9e-12
   TIGR03789  34 keaqeadqealiGlgsGallGavVgGPvGaiiggitGgligqavandealkqaqseiakqe 94 
                   +++ + ++l+G  +G ++G++  GPvG ++g++ Gg+++++va++ + ++++++ +++ 
  MMETSP1061-20121228|5610_1 221 MMKKQRKRKTLVGTIGGMVVGGAALGPVGVVLGALCGGIVTREVAKKGEKRAQRKH-EQKS 280
                 467788999************************************99844333333.3322 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.0   0.00048      0.99      19      53 ..      94     128 ..      92     146 .. 0.68
   2 ?    1.2   0.5      0.05     1e+02      11      51 ..     228     273 ..     221     286 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00048
   TIGR02811  19 avgaaagavaaatgrvasasaaaepsepekkkkgY 53 
                 +++aaa+a+a++t ++ +a++ + ++  ++ ++ Y
  MMETSP1061-20121228|5610_1  94 GIAAAAAAAATGTATATAATTGTTTTTTTTTEEEY 128
                 56666666666666666666555555545555555 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.05
   TIGR02811  11 RRdLLkglavgaaagavaaatgrvasa....saaaepsep.ekkkk 51 
                 R  L+  ++   ++ga+ + +g v+ a     ++ e +++ ek+++
  MMETSP1061-20121228|5610_1 228 RKTLVGTIGGMVVGGAALGPVGVVLGAlcggIVTREVAKKgEKRAQ 273
                 5555555555555555555555555441111344444444455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1655.36
//
Query:       MMETSP1061-20121228|5611_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1797.57
//
Query:       MMETSP1061-20121228|5615_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|5614_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-05   20.3   0.0    6.3e-05   19.6   0.0    1.2  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    0.00096   16.6   0.0     0.0017   15.8   0.0    1.4  1  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family
      0.002   14.9   0.0     0.0038   14.0   0.0    1.4  1  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   4.6e-08   6.3e-05     268     411 ..     261     409 ..     252     433 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 4.6e-08
   TIGR01137 268 lvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltkflndeWlkdkgfldd..esltkkdvlkvfgnarvkdlalkalvtvketetvadaieilrekGfdqlPvvkeagkvlgsvtlrellsa....llakkakledavkkklsk 411
                 +++G   s+v + +   e +++ + ++ +++   i ny++ +++++ + +  +  +  ++l ++   + f  ++v++   +++vtv+e+e+    +eilr       Pvv+++g+  g+v  ++++      +++k    +da+++ +s+
  MMETSP1061-20121228|5614_1 261 MMAGIQRSTVSTCVILVEGTGQMKILLPAMIVVVISNYVAHMVHNDGVYEVLMKLKgyPYLCHATD-DSFDVVTVRQIMTSPPVTVREQERAVRLVEILRSTSHHGFPVVDKDGHFQGLVRRKQIIALmefgVFEKVGPGDDAIERSISD 409
                 566666777777777777777777666677777788898888877776655443333456665555.4599*************************************************999887641111345555567777777765 PP

>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.3e-06    0.0017     220     267 ..     332     379 ..     324     380 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.3e-06
   TIGR00393 220 kevkdvmtlggktlksdallveakellkkrkitslvvvddenkllGvl 267
                  +v+++mt+ + t+++++++v   e+l++   +  +vvd++++  G++
  MMETSP1061-20121228|5614_1 332 VTVRQIMTSPPVTVREQERAVRLVEILRSTSHHGFPVVDKDGHFQGLV 379
                 579******************************************997 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.8e-06    0.0038     144     202 ..     333     390 ..     297     412 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.8e-06
   TIGR01302 144 kvsevmtkeevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdiekakef 202
                 +v+++mt +  +tv+e+  + ++ e+l++   + +pvvdk+g+  glv +k+i    ef
  MMETSP1061-20121228|5614_1 333 TVRQIMT-SPPVTVREQERAVRLVEILRSTSHHGFPVVDKDGHFQGLVRRKQIIALMEF 390
                 6899***.9999***************************************99887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.28
# Mc/sec: 3067.61
//
Query:       MMETSP1061-20121228|5613_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 2163.47
//
Query:       MMETSP1061-20121228|5617_1  [L=917]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.31
# Mc/sec: 3904.32
//
Query:       MMETSP1061-20121228|5616_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-57  191.4   0.0    7.2e-57  190.9   0.0    1.1  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
    1.6e-35  120.6   0.0    9.5e-32  108.1   0.0    2.1  2  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
    9.6e-12   42.3   0.0    1.5e-11   41.7   0.0    1.2  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    5.4e-11   39.7   0.0    8.5e-11   39.1   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    1.9e-06   25.0   0.0    3.1e-06   24.3   0.0    1.3  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B


Domain annotation for each model (and alignments):
>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.9   0.0   8.8e-60   7.2e-57     122     411 .]     313     616 .]     298     616 .] 0.87

  Alignments for each domain:
  == domain 1    score: 190.9 bits;  conditional E-value: 8.8e-60
   TIGR03224 122 stlapwsaakpyvnlyaakapitatvvgnyrltdedaesdihhivldfgslpfpvlegqsigilppgt.dekgkphylrqysvasprdgerprynnlaltvkrvte.....dhegnavrgvasnylcdlkkgdkvqvigpfgstflmpn.hpessilmictgtgsapmramterrrrr...rakgeggklllffgartkeelpyfgplqk....lpkdfidinfafsrtpeep...kryvqdaireraadvaallkddntyiyvcglkgmeegvlealrevaeaagldwetleprlraegrlhlety 411
                  + + w  ++   n+y +kap t  vv   r+   +a  ++ hiv+d  +  fp  egqs g++ppg  +++gkph +r ys+as r g+  +    +l v+r t        e+ a +g++sn+lcd k gd+v+++gp g  +l+p+  p+++ +m+ tgtg ap r +  r   +    a++  g+  lf+g  + + l y   +q+    +p d   i++a+sr+  +    k y+qd + e a++v++ l+ ++++iy cglkgm  g+ + l+ vae++gl++++   +l+++ + h+e y
  MMETSP1061-20121228|5616_1 313 EADPHWDQSNVPLNVYKNKAPFTGKVVSTKRIVGPKATGETCHIVIDH-NGDFPYWEGQSWGVIPPGVrEKDGKPHSVRLYSIASSRYGDDMTGKTGSLCVRRATYwcpelKAEDPAKKGICSNFLCDTKTGDEVKMTGPAGKVMLLPEeDPTTDYIMVATGTGIAPYRGFIRRLFNEdtpAARAYKGEAWLFLGVANSDALLYDDEFQEaksrVP-DNFRIDYALSREQTNAkggKMYIQDKVEEYADEVFTKLE-NGAHIYFCGLKGMMPGIQDMLKGVAEKKGLEYDEWLKKLKKNKQWHVEVY 616
                 56788******************************************8.5689**************83568*******************************985333235789999******************************736899***************998776554111345589****************9766654111145.55689******9876522278***************996.589*********************************************98 PP

>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   4.3e-05     0.036     218     277 ..     317     375 ..     293     380 .. 0.79
   2 !  108.1   0.0   1.2e-34   9.5e-32     381     597 .]     387     616 .]     384     616 .] 0.84

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.3e-05
   TIGR01931 218 ksaelqveeseyskknPfeaevlenqkitgrdskkdvrhieldledsglkyepGDaLGvw 277
                 +  +++v  ++y +k+Pf+++v++ ++i g +++ ++ hi +d ++ ++ y  G + Gv 
  MMETSP1061-20121228|5616_1 317 HWDQSNVPLNVYKNKAPFTGKVVSTKRIVGPKATGETCHIVID-HNGDFPYWEGQSWGVI 375
                 34555666899********************************.5679*********996 PP

  == domain 2    score: 108.1 bits;  conditional E-value: 1.2e-34
   TIGR01931 381 ltprLYsiassqk...evddevhltvgvvkk.....eaegrarlGgasgflaerlkeddtvkvyveenenfrlPe.dkdtpiimigpGtGvaPfraflqereeega......eGknWlffGnphfaeDfLYqveWqkylkk.gvltkldlafsrDqke....kiYvqdrlreqgkelfeWlqeGahiYvCGdakkmakDvekaLldviakegaldaeeaeeyleelrkekrYqrDvY 597
                  + rLYsiass+      ++   l v  +++     +ae  a++G +s+fl++  k++d+vk+     +   lPe d+ t+ im+++GtG+aP+r+f+++  +e+       +G++Wlf G  + ++  LY  e+q++  +     ++d a sr+q +    k+Y+qd++ e ++e+f+ l++GahiY CG  k m   ++++L  v +k+g     e +e+l++l+k+k+++ +vY
  MMETSP1061-20121228|5616_1 387 HSVRLYSIASSRYgddMTGKTGSLCVRRATYwcpelKAEDPAKKGICSNFLCD-TKTGDEVKMTGPAGKVMLLPEeDPTTDYIMVATGTGIAPYRGFIRRLFNEDTpaarayKGEAWLFLGVAN-SDALLYDDEFQEAKSRvPDNFRIDYALSREQTNakggKMYIQDKVEEYADEVFTKLENGAHIYFCG-LKGMMPGIQDMLKGVAEKKGL----EYDEWLKKLKKNKQWHVEVY 616
                 568********8511134556678998887744444688999***********.9*******************637899******************875443321123348********998.5679*******98544156789********98666669****************************.8889999*********99995....5689***********99999 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.0   1.8e-14   1.5e-11     204     391 ..     387     590 ..     379     601 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 1.8e-14
   TIGR01941 204 etvrayslan..ypeek..giiklnvriat..ppfa..naeippGkmssyifslkpGdkvtvsGpfGeffv...kdtdaelvfigGGaGmaplrshildllkrlk.s....krkisfwyGarskrevfyeedfdeleaen.dnfkyhvalsdplpednwtGytgfihnvlyenylkdhdaped.iefymcGpplmnaaviklledl 391
                 ++vr ys+a+  y +++  ++  l vr at   p    +   + G++s ++ + k+Gd v ++Gp G++ +   +d  ++ ++++ G+G+ap r  i  l+++   +    k +  ++ G       +y+++f+e +++  dnf+   als  +   n++G   +i + + e   + +   e+  + y cG   m   + ++l+ +
  MMETSP1061-20121228|5616_1 387 HSVRLYSIASsrYGDDMtgKTGSLCVRRATywCPELkaEDPAKKGICSNFLCDTKTGDEVKMTGPAGKVMLlpeEDPTTDYIMVATGTGIAPYRGFIRRLFNEDTpAarayKGEAWLFLGVANSDALLYDDEFQEAKSRVpDNFRIDYALSREQ--TNAKGGKMYIQDKVEEYADEVFTKLENgAHIYFCGLKGMMPGIQDMLKGV 590
                 67899999865577765224668999999944344433445789************************9874435677899****************9999865412111134455668999999*********99876537*********887..57888888998887665555555555426789***999999999999854 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0     1e-13   8.5e-11      75     229 ..     431     590 ..     422     601 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1e-13
   TIGR02160  75 GlfstwaneeiraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaaep......kstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalldsli.evdevdeaflcGPaalvddaedalkal 229
                 G+ s+++ +  ++Gd + +  P G+    ++ + +  y++va+G+Gi+P    ++  ++++       k +  l+ +  +s+ +++ +e+++ k + p  f++   lsre+ +a+  +  + ++k++++ d++  ++++  + ++cG ++++  ++d lk++
  MMETSP1061-20121228|5616_1 431 GICSNFLCD-TKTGDEVKMTGPAGKVMLLPEEDPTTDYIMVATGTGIAPYRGFIRRLFNEDTpaarayKGEAWLFLGVANSDALLYDDEFQEAKSRVPDNFRIDYALSREQTNAKGGKMYI-QDKVEEYADEVFtKLENGAHIYFCGLKGMMPGIQDMLKGV 590
                 777888877.59***************99999999******************999888775222222445679*************************************9998655555.579999999986368999*******************985 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.8e-09   3.1e-06      67     171 ..     431     541 ..     428     594 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.8e-09
   TIGR02911  67 gkvtdevfelkegdklflrgpygngfdv.dnykdkelvvvaggtgvapvkgvvey.faknskev....keldlivgfktredilfkedlaewkekinlvltldeaeeddky 171
                 g  ++ + + k+gd++ + gp g  + + ++    + ++va gtg+ap +g ++  f +++  +    +e  l +g  + +++l+ ++++e k+++   + +d a + ++ 
  MMETSP1061-20121228|5616_1 431 GICSNFLCDTKTGDEVKMTGPAGKVMLLpEEDPTTDYIMVATGTGIAPYRGFIRRlFNEDTPAAraykGEAWLFLGVANSDALLYDDEFQEAKSRVPDNFRIDYALSREQT 541
                 6677888999**************9988345567899**************9975266666554111145679******************99887655555554333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 2803.63
//
Query:       MMETSP1061-20121228|5619_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-07   25.2   0.1     0.0022   13.9   0.0    3.2  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0001      0.41      71     160 ..      96     178 ..      84     183 .. 0.78
   2 !   13.9   0.0   5.4e-07    0.0022     130     199 ..     181     270 ..     178     272 .. 0.76
   3 !    5.0   0.0   0.00028       1.1      70     142 ..     229     303 ..     210     313 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0001
   TIGR00870  71 lteLllkkeegevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasvear 160
                 l e+l+  +  e G +l h +sk++ d+    l+ l ++a k+l+l  + n  s++   +g  +++ A  +  +  v lLl++ga+vea+
  MMETSP1061-20121228|5619_1  96 LSEILKRFD--EGGHTLFHWASKRVDDIR--FLQTLVDHA-KRLSLDDVLNVASKD--NVGMRPIHWACTEGIIPHVALLLNNGAQVEAQ 178
                 566777777..779999999999777763..455555555.557776666655555..689**************************975 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 5.4e-07
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasve..............arakgdefv.................ksqekdslyhgespLnlaaclasesivsllse 199
                  g t+l +A++   +e+v  Ll+kga+++              +       +                      +   +g+sp  laa  ++ s+v++ ++
  MMETSP1061-20121228|5619_1 181 SGCTPLLIAAQYGRVEVVAYLLKKGANLQavdssrdtalhwaaY-------KgsnevcgllayykqlsfA----TQDAYGQSPVHLAALRGNTSVVRYILQ 270
                 689**************************766666666666432.......0333335588876644333....333799999999999999999999887 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.00028
   TIGR00870  70 elteLllkke......egevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkq 142
                 e+  Ll +++      + + G++ +h+++++    v   +l +l++++ + +     ++  + +  +g t+l lAihkq
  MMETSP1061-20121228|5619_1 229 EVCGLLAYYKqlsfatQDAYGQSPVHLAALRGNTSVVRYILQQLNRPGANRAE----KEVLFVKDKNGRTPLDLAIHKQ 303
                 55555555555666665666666666666666666666666666665554433....3333344445666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 2189.67
//
Query:       MMETSP1061-20121228|5622_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-09   34.8   0.0    1.4e-09   34.7   0.0    1.0  1  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   3.3e-13   1.4e-09     407     456 ..       2      51 ..       1      58 [. 0.87

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 3.3e-13
   TIGR00811 407 gicagawflgmihkkvagfqldevyvgtaeeraagekpdhsvhagreftl 456
                 gic++aw+l   hk +ag+q devy+ t+ +  a e+p  s  a    t 
  MMETSP1061-20121228|5622_1   2 GICSSAWVLARYHKMIAGYQPDEVYLETTADAGAAERPTLSSDAAAVSTT 51 
                 9*************************************999887665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 409.86
//
Query:       MMETSP1061-20121228|5620_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   32.8   0.0     0.0031   15.5   0.0    2.7  2  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    2.8e-06   24.7   0.1     0.0021   15.3   0.0    2.2  2  TIGR03448 mycothiol_MshD: mycothiol synthase
     0.0021   14.5   0.0       0.31    7.3   0.0    2.1  2  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
      0.005   14.8   0.0      0.041   11.8   0.0    2.0  2  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.1e-06    0.0031      53      79 ..     174     200 ..     123     207 .. 0.76
   2 !   14.3   0.0   7.2e-06    0.0074      80     114 ..     233     267 ..     231     273 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.1e-06
   TIGR01575  53 ldeaeilniavkpeyqgqGiGraLlke 79 
                   + +iln+ v+p+++g+GiGr+L+ +
  MMETSP1061-20121228|5620_1 174 KGTNTILNVFVRPDQRGRGIGRRLMVD 200
                 55679*******************976 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 7.2e-06
   TIGR01575  80 likeakergvkeifLEVResNvaAqaLYkklgfke 114
                 l ++ ++++ ++++L+V + N+ A++LY klg++ 
  MMETSP1061-20121228|5620_1 233 LQQQQQQQQQAVLTLDVYAQNKPAIELYLKLGYEP 267
                 677778888999*********************86 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     2e-06    0.0021      41      95 ..     139     200 ..      99     207 .. 0.60
   2 !    7.3   0.0   0.00052      0.54     257     289 ..     236     269 ..     231     273 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2e-06
   TIGR03448  41 agadrtehllvs.dsdk.aivGyaalseardad.....semaElvvhPaaRrrGigkalvra 95 
                 +  d+ + ++++ d+++  i+G a l + ++++     ++  ++ v P++R+rGig++l+ +
  MMETSP1061-20121228|5620_1 139 SVLDQKHLCVLAvDTQTnEIIGSADLYNRTNSNnnkgtNTILNVFVRPDQRGRGIGRRLMVD 200
                 3345555555442333324***99997644332111113457899************99865 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00052
   TIGR03448 257 leerglravl.LYveadneaAvrtYekLgFtvae 289
                  ++++++avl L v a n+ A+++Y kLg++ a+
  MMETSP1061-20121228|5620_1 236 QQQQQQQAVLtLDVYAQNKPAIELYLKLGYEPAS 269
                 4566677776589*****************9765 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0012       1.2     107     179 ..     128     200 ..      74     221 .. 0.74
   2 !    7.3   0.0    0.0003      0.31     180     230 ..     233     286 ..     228     295 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0012
   TIGR03103 107 vpvradllleer.esraivylvaedeesgeivGtvmgvdhekafddpekGsslWalavdpqaakpGvGealvra 179
                 ++ + d++ ++   +++ + ++a+d++++ei+G++   + ++  ++ +   ++  + v p+ +  G+G  l+  
  MMETSP1061-20121228|5620_1 128 LNSERDFVNAQSvLDQKHLCVLAVDTQTNEIIGSADLYNRTNSNNN-KGTNTILNVFVRPDQRGRGIGRRLMVD 200
                 4445555543320344556689************998887765443.44456778999**********998765 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0003
   TIGR03103 180 laehfqarglayldlsvlhdneqaialyeklgfr...ripvfalkrknainekl 230
                 l ++ q++++a l l v   n+ ai ly klg++   ++++ +l    ain +l
  MMETSP1061-20121228|5620_1 233 LQQQQQQQQQAVLTLDVYAQNKPAIELYLKLGYEpasAVHAGTLGLARAINANL 286
                 566778899999********************9822234444555566666665 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.13   1.4e+02      57      98 ..     153     199 ..     134     205 .. 0.68
   2 !   11.8   0.0     4e-05     0.041     101     139 ..     233     271 ..     228     279 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.13
   TIGR03585  57 eqesepiGvisltd.inlvhk...saalgiYanpkvk.kgkGsvlee 98 
                 +q +e+iG ++l + +n +++   ++ l ++  p+ +  g+G+ l++
  MMETSP1061-20121228|5620_1 153 TQTNEIIGSADLYNrTNSNNNkgtNTILNVFVRPDQRgRGIGRRLMV 199
                 47789999988854134333311145677888888888888888886 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 4e-05
   TIGR03585 101 leyafeklklkkLkleVlesNekalklyekfgfelegvl 139
                 l++ +++ +   L l+V+ +N+ a++ly k g+e  + +
  MMETSP1061-20121228|5620_1 233 LQQQQQQQQQAVLTLDVYAQNKPAIELYLKLGYEPASAV 271
                 567777888889*********************977665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1127.56
//
Query:       MMETSP1061-20121228|5621_1  [L=1292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       679  (0.165529); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.80u 0.18s 00:00:01.98 Elapsed: 00:00:01.59
# Mc/sec: 1072.52
//
Query:       MMETSP1061-20121228|5623_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 450.96
//
Query:       MMETSP1061-20121228|5629_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.7   4.6       0.03   12.5   3.2    1.1  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   3.2   7.3e-06      0.03      22      48 ..       3      29 ..       1      38 [. 0.49

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.3e-06
   TIGR02811 22 aaagavaaatgrvasasaaaepsepek 48
                a+a+a++aat+++   ++++e++++++
  MMETSP1061-20121228|5629_1  3 ATAAAAVAATTTTTTIATDKEQQQQQQ 29
                444444444444444444444444323 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 350.06
//
Query:       MMETSP1061-20121228|5633_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 647.38
//
Query:       MMETSP1061-20121228|5634_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 839.93
//
Query:       MMETSP1061-20121228|5631_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-10   39.1   9.9    3.3e-05   21.3   1.5    3.1  3  TIGR00950 2A78: carboxylate/amino acid/amine transporter
    3.9e-06   24.6   0.6      0.022   12.2   0.1    2.3  2  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein
     0.0026   15.1   3.1      0.022   12.1   0.4    2.2  2  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.3   1.1e-07   0.00015     191     263 ..      82     154 ..      60     155 .. 0.81
   2 ?    2.1   0.0     0.017        23     127     184 ..     207     261 ..     195     270 .. 0.71
   3 !   21.3   1.5   2.4e-08   3.3e-05      43     120 ..     322     399 ..     312     403 .] 0.86

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.1e-07
   TIGR00950 191 tslqwlallyL.gligtllayflynkglkevdasaasilalleplvallLgllilgetls..lvqliggalilaav 263
                 +++++   ly+ ++ig l++   ++ glk++ a ++ i+  l+p  a+  g++++ e+++  ++ lig+ l +++v
  MMETSP1061-20121228|5631_1  82 ANVKF---LYIsSIIGILIGDWTWLEGLKYLGARKVIIMDSLKPFLAAFTGWVFFDEKFNnpWTALIGLTLTVLGV 154
                 34444...4442799*******************************************974467899988877775 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.017
   TIGR00950 127 laGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvlliGallllpfalllgpn 184
                   G+++++   +   lg  l+k+ +      +  ++ fv +  +++ +l++a ll+  
  MMETSP1061-20121228|5631_1 207 NYGIFMSISNVALHTLGACLTKKFGVEMT--TWEIN-FVRFGFSGVCMLIVAILLQIR 261
                 46777777777777888999999985555..44444.567899999888888877654 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 2.4e-08
   TIGR00950  43 lkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsd 120
                 +  + r+ l  a+  ++  +l+ +a+ + + a ++ l ++ Ply++ l  ++ k++++ ++ l+a+ a++Gi+ll  +
  MMETSP1061-20121228|5631_1 322 RASWVRVTLGVAFVSFMNPALVNYAMFQIPFALLLTLESIGPLYTLPLTLVMHKQCPSLRASLGAAFAVIGIILLSLN 399
                 5567777888888888888999999999999999999**********************************8887655 PP

>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   6.3e-05     0.086      95     141 ..     116     165 ..     114     171 .. 0.82
   2 !   12.2   0.1   1.6e-05     0.022     200     280 ..     314     395 ..     281     396 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.3e-05
   TIGR03340  95 laRsl.PvlvaiaatlllgeeLsa..laWlGillivlGllvlglskkaqs 141
                 ++ sl P l a +++++++e+ +   +a +G++l vlG+ ++g ++ +++
  MMETSP1061-20121228|5631_1 116 IMDSLkPFLAAFTGWVFFDEKFNNpwTALIGLTLTVLGVALVGFEVGHDK 165
                 566777**************9975337889***********998876654 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 1.6e-05
   TIGR03340 200 kraiveearqilasatlgglli.gsaYalvlyAmtllpvalvvalrevsivlavllgilllnekvtlkrllgvviivaGlvv 280
                   a+ +  r  +  +tlg  ++     alv yAm ++p al+ +l  ++ ++++ l++++ ++   l+  lg +  v+G+++
  MMETSP1061-20121228|5631_1 314 WYAMPNLSRASWVRVTLGVAFVsFMNPALVNYAMFQIPFALLLTLESIGPLYTLPLTLVMHKQCPSLRASLGAAFAVIGIIL 395
                 4456666778888888886655156789***************************************************987 PP

>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.1    0.0077        11     263     290 ..     127     156 ..      67     168 .. 0.81
   2 !   12.1   0.4   1.6e-05     0.022      27     137 ..     287     398 ..     280     402 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0077
   TIGR00817 263 vvSilffetkis..flqvlGvilaiaGvfl 290
                  + ++ff +k +  +   +G++l+++Gv+l
  MMETSP1061-20121228|5631_1 127 FTGWVFFDEKFNnpWTALIGLTLTVLGVAL 156
                 456788888876545666788888888876 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 1.6e-05
   TIGR00817  27 lfhypvlktlvslavgvllellswssilkkrlkiskall.klllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefp.ltlylsLlpivlGvalasl 137
                 +  +p+++t+vsl   +++   ++ ++ + ++++s a +  ++l+va+v +++    n ++ ++++ +  t+ ++ p++++ l  + ++++ p l   l  +  v+G+ l sl
  MMETSP1061-20121228|5631_1 287 YNAIPTTTTVVSLDTSSIYSSGHRETRWYAMPNLSRASWvRVTLGVAFVSFMNPALVNYAMFQIPFALLLTLESIGPLYTLPLTLV-MHKQCPsLRASLGAAFAVIGIILLSL 398
                 5667999***************************998762689*************************************998755.55566603334444556667666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2127.66
//
Query:       MMETSP1061-20121228|5626_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.28
# Mc/sec: 2494.14
//
Query:       MMETSP1061-20121228|5632_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-16   57.4   0.1    2.3e-16   57.0   0.0    1.0  1  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    7.4e-14   48.4   0.1    1.8e-13   47.1   0.0    1.5  2  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    4.5e-13   46.1   0.0    5.8e-13   45.7   0.0    1.1  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    2.1e-11   40.1   0.1    2.8e-11   39.7   0.0    1.0  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    5.8e-11   38.8   0.0    7.6e-11   38.4   0.0    1.1  1  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    1.5e-09   34.4   0.0      2e-09   34.0   0.0    1.1  1  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    2.8e-07   26.3   0.0    3.7e-07   25.9   0.0    1.0  1  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    6.8e-07   25.9   0.0    8.8e-07   25.5   0.0    1.1  1  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    1.6e-06   23.8   0.0    2.1e-06   23.4   0.0    1.1  1  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
      1e-05   22.5   0.1    1.3e-05   22.1   0.1    1.1  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    9.4e-05   19.1   0.1    0.00012   18.7   0.0    1.1  1  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    0.00018   17.2   0.0    0.00022   16.9   0.0    1.0  1  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
     0.0036   14.0   0.1     0.0051   13.5   0.0    1.1  1  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase


Domain annotation for each model (and alignments):
>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   7.3e-19   2.3e-16      84     184 ..      99     211 ..      94     217 .. 0.82

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 7.3e-19
   TIGR01647  84 eaLkkslapkakvlRdgkwqeleakelvpGDvvalklGdivpaDvklvegdk.....lkvDqaaltGEslpvekklgdia.......ysgsvvkkGEveavvvatGvntffGk 184
                 +a k+ + + a+vlR+gkw++ +a++lv GD ++l  GdivpaD+ +  + +     l vD   +tG s p + + ++++         g  v +G ++a+v+a G +t +G+
  MMETSP1061-20121228|5632_1  99 KAHKNCIPEDAEVLRNGKWIRYDAASLVVGDCIRLVEGDIVPADCVIALDAEeddedLLVDLRVVTGQSRPKQLNRDNTTtrnqrtlLFGGSVVQGRATALVTAIGPETVLGQ 211
                 6778889999***********************************997544445567*************9876665543111112245677889****************97 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.33     1e+02      39      65 ..      60      86 ..      48      96 .. 0.78
   2 !   47.1   0.0   5.6e-16   1.8e-13     130     245 ..      96     213 ..      91     218 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.33
   TIGR01106 39 earaaellardgpnaltppkttpeyvk 65
                +++++e + +d  n + pp + p ++ 
  MMETSP1061-20121228|5632_1 60 ASQVREWVHKDAFNVVPPPVDCPAWLC 86
                456788899**************9975 PP

  == domain 2    score: 47.1 bits;  conditional E-value: 5.6e-16
   TIGR01106 130 kilesfknlvpqqalvirdgeklsinaeevvvgdlvevkggdripadlri.isa....kglkvdnssltgesepqtrspefthenpletrniaffstncvegtargivvstgdrtvlgria 245
                 k +++ kn +p++a v+r+g+ ++ +a  +vvgd + +  gd +pad  i ++a    ++l vd   +tg+s p+  + + t       +   +f  ++v+g a+ +v ++g +tvlg++ 
  MMETSP1061-20121228|5632_1  96 KSMKAHKNCIPEDAEVLRNGKWIRYDAASLVVGDCIRLVEGDIVPADCVIaLDAeeddEDLLVDLRVVTGQSRPKQLNRDNTTTRN---QRTLLFGGSVVQGRATALVTAIGPETVLGQLI 213
                 67999******************************************988455522225789***********9998888776543...3456899**********************975 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   1.8e-15   5.8e-13     157     252 ..     108     216 ..      94     231 .. 0.82

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 1.8e-15
   TIGR01517 157 kikviRggqeiqisiadvvvGDivslstGdvvpaDgvli.....sGlklkiDessltGesdpik........kgkekLlsGtkvlegsgrmlvtavGvnsvtGklltel 252
                   +v+R+g+ i+ + a +vvGD ++l  Gd+vpaD+v+      +  +l +D   +tG s p++        +++  Ll G  v++g ++ lvta+G ++v G+l+++ 
  MMETSP1061-20121228|5632_1 108 DAEVLRNGKWIRYDAASLVVGDCIRLVEGDIVPADCVIAldaeeDDEDLLVDLRVVTGQSRPKQlnrdntttRNQRTLLFGGSVVQGRATALVTAIGPETVLGQLIKTG 216
                 4689********************************986333323467899999*****988762222222256778***************************99875 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   8.9e-14   2.8e-11     106     221 ..      96     214 ..      92     224 .. 0.85

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 8.9e-14
   TIGR01522 106 kslealnklvpaechliraGkeehvlasklvpGdlvelsvGdrvpadlriv.ea....vdlsidesnltGettpvkksseaiealaersniaymGtlvreGkgkGivvgtGsntefGavfe 221
                 ks++a ++ +p++++++r+Gk  +  a++lv Gd + l  Gd vpad+ i  +a     dl +d   +tG++ p + + +  ++  +r+     G  v +G+++ +v + G +t +G++ +
  MMETSP1061-20121228|5632_1  96 KSMKAHKNCIPEDAEVLRNGKWIRYDAASLVVGDCIRLVEGDIVPADCVIAlDAeeddEDLLVDLRVVTGQSRPKQLNRDNTTTRNQRTL--LFGGSVVQGRATALVTAIGPETVLGQLIK 214
                 89**********************************************99534422225799999999******9988887777666654..45666678*****************9876 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.4e-13   7.6e-11     114     239 ..      96     214 ..      85     224 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 2.4e-13
   TIGR01524 114 raadalkkmvkntatvlrvinenieaaleevpidelvpGdviklaaGdlipadvrv.iaa....rdlliaqsaltGeslpvekvaatkeakdkellelenlllmGtnvvsGraqavvlatGsstffGslak 239
                 ++ +a k+ + + a+vlr      ++ +       lv Gd i+l  Gd++pad  + ++a     dll+   ++tG+s p +        +d+     +  ll G  vv Gra a+v a G +t +G+l k
  MMETSP1061-20121228|5632_1  96 KSMKAHKNCIPEDAEVLR------NGKWIRYDAASLVVGDCIRLVEGDIVPADCVIaLDAeeddEDLLVDLRVVTGQSRPKQLN------RDNTTTRNQRTLLFGGSVVQGRATALVTAIGPETVLGQLIK 214
                 566788999999999999......7889999999*******************8873444233369*************96543......45555556667788999*********************976 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   6.2e-12     2e-09      53     167 ..      96     213 ..      92     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 6.2e-12
   TIGR01116  53 kaiealkeleseealvlrdark....akdlvpGdivelavGdkvpadvrllelkslkvdqsiltG.esvsvekktesvkkekaavqdkknmlfsGtlvvaGkalgvvvrtGvnteiGkir 167
                 k+++a k+  +e+a vlr++++    a+ lv+Gd + l  Gd vpad  + +l + + d+ +l    +v+ + + +++++++ ++++++++lf G  vv+G+a ++v++ G +t +G++ 
  MMETSP1061-20121228|5632_1  96 KSMKAHKNCIPEDAEVLRNGKWirydAASLVVGDCIRLVEGDIVPADC-VIALDAEEDDEDLLVDlRVVTGQSRPKQLNRDNTTTRNQRTLLFGG-SVVQGRATALVTAIGPETVLGQLI 213
                 5678899999*********9974444679******************8.5678888888877764144455556667777888888888999966.689******************864 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.2e-09   3.7e-07     107     228 ..      96     214 ..      87     220 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.2e-09
   TIGR01523 107 ktmdslktlaspnahvirsskseaidskdlvpgdvvllkvgdvvpadlrlvetknfetdealltgeslpvikdanlvfqkeeevsvgdrlnlaysssivvkgrakgiviktalqseigkiak 228
                 k+m++ k+     a v+r++k    d+  lv gd + l  gd+vpad  ++     e de ll    +   +     ++++ +++  ++  l +  s vv+gra  +v + + ++ +g++ k
  MMETSP1061-20121228|5632_1  96 KSMKAHKNCIPEDAEVLRNGKWIRYDAASLVVGDCIRLVEGDIVPADC-VIALDAEEDDEDLLVDLRVVTGQSRPKQLNRD-NTTTRNQRTLLFGGS-VVQGRATALVTAIGPETVLGQLIK 214
                 889999999999***********************************7.56677778899999864444333333444444.445555667889887.679***********9999999876 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.8e-09   8.8e-07      28      94 ..     102     173 ..      91     207 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.8e-09
   TIGR01494  28 kdkelnskkvtvlreg.ekeisskdlvvGDivlvkkgekvpaDgvll......sgsaevdessLtGEsnpvekk 94 
                 k+    ++ + vlr+g + + ++  lvvGD++++ +g++vpaD+v+       + ++ vd   +tG s+p++  
  MMETSP1061-20121228|5632_1 102 KN--CIPEDAEVLRNGkWIRYDAASLVVGDCIRLVEGDIVPADCVIAldaeedDEDLLVDLRVVTGQSRPKQLN 173
                 33..55666777776437888999*********************97444444467899999999999998754 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   6.7e-09   2.1e-06     220     363 ..      94     227 ..      84     234 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 6.7e-09
   TIGR01657 220 elrdmvaks....qsveViRekkeetiasdelvpgDivlisrleekllpcDavLl......egscivnEsmltGEsvpvlKvpieeeedsdeklqlkekskkhvLfgGTkvlqirpdegdtkvlaiVvrTGFstskGqLvrsilypkprvfkfy 363
                 +l++m a++    ++ eV+R++k++  ++  lv gD++ +   e+ ++p+D+v+       + + +v+  ++tG s p    +++   d  +   ++  +++ +LfgG  v+q r       + a+V+  G +t  GqL+++  +p p +  ++
  MMETSP1061-20121228|5632_1  94 HLKSMKAHKncipEDAEVLRNGKWIRYDAASLVVGDCIRLV--EGDIVPADCVIAldaeedDEDLLVDLRVVTGQSRPK---QLNR--D--N---TTTRNQRTLLFGGS-VVQGR-------ATALVTAIGPETVLGQLIKTGKFPVPEKDCDE 227
                 55566544423337889***********************9..*********995333332346889999999999884...4442..2..2...23344577889885.55544.......56799999**********99999988765444 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   4.2e-08   1.3e-05      45     150 ..      97     214 ..      93     217 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.2e-08
   TIGR01525  45 alsellelapeealllkeddseeevaveelqvgDivkVkpGekipvDGeviegese......vDesllTGEslpvekkegde........ViaGtvnlegsleikvtkvgedstlaqivk 150
                 ++++ ++  pe+a +l++ ++  + ++++l vgD +++ +G+ +p+D+++  +  e      vD +++TG s p + +++++         ++G+v  +g+ +  vt+ g +++l q++k
  MMETSP1061-20121228|5632_1  97 SMKAHKNCIPEDAEVLRN-GKWIRYDAASLVVGDCIRLVEGDIVPADCVIALDAEEddedllVDLRVVTGQSRPKQLNRDNTttrnqrtlLFGGSVV-QGRATALVTAIGPETVLGQLIK 214
                 678888899********6.79***************************99765443223333888999**999976554433111111115566654.4555666777777777777776 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.8e-07   0.00012      45     115 ..      97     177 ..      93     215 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.8e-07
   TIGR01512  45 alkaLlelaPdtarrlee....eVaveelkvgdvvvVkkGervPvDGevlsgess......ldesalTGEsvpvekakgde 115
                 ++ka ++  P+ a++l++    + ++++l vgd + + +G+ vP+D+++  ++ +      +d +++TG s p + +++++
  MMETSP1061-20121228|5632_1  97 SMKAHKNCIPEDAEVLRNgkwiRYDAASLVVGDCIRLVEGDIVPADCVIALDAEEddedllVDLRVVTGQSRPKQLNRDNT 177
                 677777888888888775333356889********************9976544323333399999******999887765 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.9e-07   0.00022      69     131 ..      91     153 ..      84     184 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 6.9e-07
   TIGR01652  69 aieDirrrksDkevNnkkvevleesakfkeikwkdlkVGdivkvkkdeeiPaDlll.lssseed 131
                 +i  ++ +k+ k+   + +evl++ +k+ +    +l VGd +++ +++ +PaD+++ l ++e+d
  MMETSP1061-20121228|5632_1  91 CITHLKSMKAHKNCIPEDAEVLRN-GKWIRYDAASLVVGDCIRLVEGDIVPADCVIaLDAEEDD 153
                 56667777888888889999**98.7****************************9845555555 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.6e-05    0.0051      74     170 ..     101     214 ..      93     217 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.6e-05
   TIGR01511  74 Laklkpeeatllkkd....vdveelqvgdilkvkpgekipvDGvvveGese......vdeslltGEslpvkkkvgde........viaGtvngegsllvkvtkvgedtllaqivk 170
                   +  pe+a++l++      d ++l vgd +++  g+ +p+D+v+     e      vd  ++tG s p + + +++        +++G+v  +g+ +  vt++g +t+l q++k
  MMETSP1061-20121228|5632_1 101 HKNCIPEDAEVLRNGkwirYDAASLVVGDCIRLVEGDIVPADCVIALDAEEddedllVDLRVVTGQSRPKQLNRDNTttrnqrtlLFGGSVV-QGRATALVTAIGPETVLGQLIK 214
                 556667788888775222256789*********************866554222333677789****9987665543112222225677775.5677888999999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 864.88
//
Query:       MMETSP1061-20121228|5636_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|5635_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       443  (0.107996); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 2408.80
//
Query:       MMETSP1061-20121228|5638_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 425.30
//
Query:       MMETSP1061-20121228|5639_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1517.87
//
Query:       MMETSP1061-20121228|5644_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1061-20121228|5641_1  [L=769]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.68u 0.17s 00:00:00.85 Elapsed: 00:00:00.46
# Mc/sec: 2206.51
//
Query:       MMETSP1061-20121228|5646_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    9.2   6.3       0.16    9.0   4.4    1.2  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
       0.48    8.2   5.1       0.56    8.0   3.5    1.1  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.4   7.7e-05      0.16      47     129 ..       9      89 ..       3     146 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 7.7e-05
   TIGR03752  47 lkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakle 129
                  k+l +e+    +t+  +v+  +e++k++a+  ++Ne+ ++en++ k++e++ ++r++++   ++ + ++++  l ++ ++++
  MMETSP1061-20121228|5646_1   9 KKSLSAEALALVETIFAVVS-DREITKKYAETAEDNENDNNENNENKNNENKNNDRVTNNNIEAQPAPQEDNA-LPDSSQRIA 89 
                 56677777777888888886.5899999************999999999999998887664444444444443.333333332 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.5   0.00027      0.56      45     133 ..      20     126 ..       5     140 .. 0.48

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00027
   TIGR03499  45 vevvaaideeesasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae..................eelrkelkalkellekqlselal 133
                 ve ++a+ ++ + +++ +e +++++ +++e+++++++e+k++++ ++++ +a++a ++ ++l++++                  e+ ++  +++k+ +e+ +s++++
  MMETSP1061-20121228|5646_1  20 VETIFAVVSDREITKKYAETAEDNENDNNENNENKNNENKNNDRVTNNNIEAQPAPQEDNALPDSSqriawtsqseslcpplcaERNQSLSNDVKNFVEAFVSAMEE 126
                 45455555555222222222222222222222222222222222222222233333333332222255666667778899999877777777788888877777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 887.93
//
Query:       MMETSP1061-20121228|5647_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 587.95
//
Query:       MMETSP1061-20121228|5653_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.58    6.7   9.5      0.049   10.3   3.3    1.6  2  TIGR03920 T7SS_EccD: type VII secretion integral membrane protein EccD


Domain annotation for each model (and alignments):
>> TIGR03920  T7SS_EccD: type VII secretion integral membrane protein EccD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   3.3   1.2e-05     0.049     395     444 ..      48      96 ..      26      97 .. 0.86
   2 ?   -2.8   0.1      0.11   4.6e+02     350     371 ..     108     129 ..     106     141 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.2e-05
   TIGR03920 395 lllavlvlllavaalavgivspatrlsPvtrrllelleglalaailPLal 444
                 l+++++v++++va lav+ +s a++    ++rl+e+l +l + +  P+a+
  MMETSP1061-20121228|5653_1  48 LWVFAVVVAALVASLAVAHASVAQERGEGWIRLGEWLACLLVFVA-PVAA 96 
                 799999999999999***99********************99988.9987 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.11
   TIGR03920 350 tavalllrarsyasawqavaLl 371
                 ++ +l ++a+++++ w++++++
  MMETSP1061-20121228|5653_1 108 AGWLLGMHANRHEKWWSRATMA 129
                 6677888888888888887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1256.54
//
Query:       MMETSP1061-20121228|5651_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1061-20121228|5654_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 332.42
//
Query:       MMETSP1061-20121228|5657_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2936.76
//
Query:       MMETSP1061-20121228|5665_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|5664_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|5666_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-06   25.5   0.0    2.7e-05   21.7   0.0    2.1  2  TIGR00195 exoDNase_III: exodeoxyribonuclease III
     0.0002   18.8   0.2     0.0089   13.4   0.0    2.7  2  TIGR00633 xth: exodeoxyribonuclease III (xth)


Domain annotation for each model (and alignments):
>> TIGR00195  exoDNase_III: exodeoxyribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.3e-08   2.7e-05      21     148 ..      80     221 ..      65     231 .. 0.84
   2 ?    1.3   0.0     0.022        46     215     254 .]     418     459 ..     415     459 .. 0.64

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.3e-08
   TIGR00195  21 flkeekpDvlclqEtkvadeqfpkelvekegYhvffsgakgysGvailskeePls.vrlGlgaeee...deekRvivaelesvl......vvnvYv...Pngskadeeklkyklqfleelqkyleklekkdkp.vlicGDln 148
                  + +  +Dv+clqE+  ++ + + ++++  gY      ++g+   a++ k+     v+  +++++      e+R+   e ++ +      vvn  +   P+gs++ ++ l++    l+  +k  ++++ +d+  v++cGD+n
  MMETSP1061-20121228|5666_1  80 RIGSIGADVVCLQEVSPESFEQDFQFMQDLGYDECALFKRGRFRPATFWKTSECRlVSDPVHKDRSlitAFERRITELENNEQTeqppwyVVNCHLqagPQGSRRVRQILEATKGVLTLARKQKQEKKPEDTArVIVCGDFN 221
                 5667789********99999999********************99999987555549999998887776778898888877766788888***987666999****9999999999998888888888888878*******9 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.022
   TIGR00195 215 RiDyflvseklkervkdalidk.dvrgsek.psDHaPvvlel 254
                 R D ++ + +  + +  + i++ ++   ek  sDH+Pv + +
  MMETSP1061-20121228|5666_1 418 RFDRIYYNSQSMTPISVTDITSdKPCPNEKeASDHLPVAASF 459
                 677777766666666555554414555666379*****9865 PP

>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.4e-06    0.0089      22     151 ..      80     221 ..      66     226 .. 0.70
   2 ?    1.9   0.0     0.014        28     236     254 ..     435     459 ..     416     460 .. 0.53

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.4e-06
   TIGR00633  22 llkeekpDvlclQEtKvaeeqlpkelleeegYevafssakkkgysGvallskeepesvrvgigaeee...deegr......vitaefdeltvvnvYv...Pngeardlerleyklefwe.allaklekeldkekpvvlcGDlN 151
                  + +  +Dv+clQE+  ++ ++  + ++  gY+     ++  ++   ++    e   v+  + ++++     e+r        ++e    +vvn  +   P+g++r ++ le+   ++  a ++k ek+ ++++ v++cGD+N
  MMETSP1061-20121228|5666_1  80 RIGSIGADVVCLQEVSPESFEQDFQFMQDLGYDECALFKR-GRFRPATFWKTSECRLVSDPVHKDRSlitAFERRitelenNEQTEQPPWYVVNCHLqagPQGSRRVRQILEATKGVLTlARKQKQEKKPEDTARVIVCGDFN 221
                 5667789*******9888877888888999**98876665.566766666667777788777775431113344444444455566677899999976668888777777776665555144566677778899********9 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.014
   TIGR00633 236 slidsevrg......SDHaPvvlel 254
                 + i+s+         SDH Pv + +
  MMETSP1061-20121228|5666_1 435 TDITSDKPCpnekeaSDHLPVAASF 459
                 333333222234455******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2177.82
//
Query:       MMETSP1061-20121228|5663_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1199.90
//
Query:       MMETSP1061-20121228|5669_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.062   10.2   6.3      0.065   10.2   4.4    1.1  1  TIGR01541 tape_meas_lam_C: phage tail tape measure protein, lambda family
       0.17    8.1   7.9       0.18    8.0   5.4    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR01541  tape_meas_lam_C: phage tail tape measure protein, lambda family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.4   3.2e-05     0.065       7      59 ..      24      74 ..      18      79 .] 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.2e-05
   TIGR01541  7 tqqiadrklkklnaaeekvlasrkdevkaleklekleeakqkalelleklaea 59
                + + ++ ++++l++ + + l++++de ++  k++  e+a++++l+l++ l+e 
  MMETSP1061-20121228|5669_1 24 QRKKELMAQEELTVEKTRHLLRKRDELIE--KQKTMEDARARQLSLQKELKES 74
                56789999******************986..56678************99986 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.4     9e-05      0.18      58     122 ..       9      73 ..       3      78 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 9e-05
   TIGR03319  58 eevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekelee 122
                 ee+ +++e + k +++r+kel ++e+   +k+ +l rk ++l +k++++e  +++  + +kel+e
  MMETSP1061-20121228|5669_1   9 EEQVRIHEATLKAWRQRKKELMAQEELTVEKTRHLLRKRDELIEKQKTMEDARARQLSLQKELKE 73 
                 56677778888899999999999999999999999999999999999998887776667777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       341  (0.0831302); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 359.56
//
Query:       MMETSP1061-20121228|5668_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1799.45
//
Query:       MMETSP1061-20121228|5662_1  [L=1231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.61u 0.13s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 3610.64
//
Query:       MMETSP1061-20121228|5670_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 291.77
//
Query:       MMETSP1061-20121228|5671_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1906.08
//
Query:       MMETSP1061-20121228|5672_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 1407.88
//
Query:       MMETSP1061-20121228|5676_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 565.67
//
Query:       MMETSP1061-20121228|5680_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 455.36
//
Query:       MMETSP1061-20121228|5681_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 652.61
//
Query:       MMETSP1061-20121228|5673_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.068    9.5   0.0        0.1    8.9   0.0    1.1  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit


Domain annotation for each model (and alignments):
>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   2.5e-05       0.1     358     431 ..     483     553 ..     472     558 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 2.5e-05
   TIGR01318 358 klvrtklgepdakGrrraeivaGseavleadvviiafGfephamewlaehgikldskGrivaaeeselayqtsn 431
                  +++ kl ep+ +       + Gs +  +    ++a+Gf+p++ ew ++ +++ +sk  +++++++ +  +t+n
  MMETSP1061-20121228|5673_1 483 GVLKRKLKEPGVD---SVALLYGSSHCPDLHNKLVAMGFQPTKKEWRTAWSVQESSKSSVKSSSNDAMGNETAN 553
                 4566677777554...45678899999999999*************************9999988877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 2539.79
//
Query:       MMETSP1061-20121228|5675_1  [L=874]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (874 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 3117.80
//
Query:       MMETSP1061-20121228|5677_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 2384.05
//
Query:       MMETSP1061-20121228|5684_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 346.47
//
Query:       MMETSP1061-20121228|5685_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-06   24.7   0.4    1.5e-05   23.2   0.3    1.8  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.3   3.8e-09   1.5e-05       3     142 ..     187     355 ..     185     370 .. 0.64

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 3.8e-09
   TIGR00401   3 itfalGCfWgveklfr........kidgvektkvGylngktenPt.......yeevCs.gdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgi.yalsdedekaaeaskerlqe............sakykkkivteiekaenf..yeaeeyhq 142
                 ++f++GCfW v++ f         + d+ +  ++Gy++g++           + +v   g+ ghaevv++   ++++  +++   + + +    +  q  D+G +yr  + +    +++ ++++++ +  +             ++ + + v  i + +n+  y ae+yhq
  MMETSP1061-20121228|5685_1 187 VYFGCGCFWHVQHEFVeaektilgRSDKQVTSRAGYAGGNLGMKDgkvcyhnFAQVSDyGKLGHAEVVSLRIPESKF--KDFAIEYCRLFKKGMRPDQLGDRGLEYRNLVgFSGGAKNNPVLANQMVEASKeigdeldfavgkGSDADIPRVVWIMDSDNYpsYVAEQYHQ 355
                 79*************8443333333344567789***9664332222453335667645899********9999875..667667888888899999**********9884444444433333222222222444465565532222334455566666665588888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 2238.08
//
Query:       MMETSP1061-20121228|5683_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0086   13.3   0.0      0.011   12.9   0.0    1.1  1  TIGR01718 Uridine-psphlse: uridine phosphorylase


Domain annotation for each model (and alignments):
>> TIGR01718  Uridine-psphlse: uridine phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.7e-06     0.011     156     220 ..      75     138 ..      68     155 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.7e-06
   TIGR01718 156 yvgqerdtysgrvvaelkgklealralnvlayemesatlltlasvrgvraGavlavianrtrdei 220
                 y++ +  +   rv  +++g+++  +++  +++em s   ++   v+  r+G v++vi nr     
  MMETSP1061-20121228|5683_1  75 YTDPDDGSKRTRVRFNMEGQFDSAICFAEVSSEMSSGE-YVYVLVQDKRSGRVITVIDNRAALTA 138
                 55555566677899999*****************9876.5666799*************986544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1011.92
//
Query:       MMETSP1061-20121228|5688_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2585.17
//
Query:       MMETSP1061-20121228|5689_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-13   46.1   0.0      4e-12   43.9   0.0    1.9  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    6.7e-12   43.1   0.0    3.9e-09   34.1   0.0    2.2  2  TIGR03611 RutD: pyrimidine utilization protein D
    6.7e-08   29.7   0.0    5.2e-06   23.5   0.0    2.1  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    2.3e-06   25.0   0.0    5.3e-06   23.8   0.0    1.5  2  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
    3.2e-06   24.8   0.0     0.0009   16.8   0.0    2.3  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    5.6e-06   23.8   0.0    1.3e-05   22.5   0.0    1.6  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    0.00087   16.4   0.0     0.0082   13.2   0.0    2.2  2  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
     0.0012   16.2   0.0      0.002   15.5   0.0    1.3  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases


Domain annotation for each model (and alignments):
>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   7.9e-15     4e-12      10     111 ..      46     148 ..      36     162 .. 0.85
   2 ?   -0.4   0.0      0.26   1.3e+02     194     234 ..     241     285 ..     223     300 .. 0.70

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 7.9e-15
   TIGR02427  10 eadkpvlvlinSLGtdlrlwdkvlealtkdfrvlryDkrGHGlSdvpegpysiedladdvlallDalgiekaavcGlSlGGliaqaLaarrp..drvealvlsn 111
                 e++ pvl  ++ + ++l++  +   al++++r++++D +G G+S  +e   +++  addv + lD+lg+e++ ++G SlGGl  +aL ++r+   rv + vl++
  MMETSP1061-20121228|5689_1  46 ESGMPVLFCLGLMTSSLAIMVAHHRALRNNLRIIAIDYPGIGESTFQEDR-TLGGWADDVSEFLDHLGLERVRLLGHSLGGLHVLALLSNRSfkRRVIRTVLLC 148
                 4567877777888899****************************987765.*******************************9999988874326777777766 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.26
   TIGR02427 194 vPtlviaGdeDgstPpelvreiadlv....pgarfaeieeaaHlp 234
                  P+++  G++D+  P e+  e++ ++     + ++  ie++ H  
  MMETSP1061-20121228|5689_1 241 GPVIIFHGTDDTLVPEEKSLELVRALklrnCDVTYISIEGSDHNN 285
                 5999999********997666665541111456666666666655 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   7.6e-12   3.9e-09      12     118 ..      47     154 ..      38     160 .. 0.85
   2 !    6.9   0.0    0.0015      0.79     199     231 ..     241     275 ..     226     298 .. 0.76

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 7.6e-12
   TIGR03611  12 daevvvlssGLGGsg.sywapqlevleqefrvvvyDhrGtgrspeelaedysiaalaadvlelldaldiekahvvGhalGgliglelalrkpe..rlaklvlinaWskld 118
                  +  v++  GL  s+ +   ++ ++l+++ r++  D  G g+s  +++ed ++   a+dv e ld+l++e++ ++Gh+lGgl  l l  +++   r+ + vl+  W  ++
  MMETSP1061-20121228|5689_1  47 SGMPVLFCLGLMTSSlAIMVAHHRALRNNLRIIAIDYPGIGES--TFQEDRTLGGWADDVSEFLDHLGLERVRLLGHSLGGLHVLALLSNRSFkrRVIRTVLLCPWLYIE 154
                 555678888887665367788999*****************98..589**********************************9999877665334999999999998776 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0015
   TIGR03611 199 lpvlliaakDDlLvPytqsseLaekL..Pdaelkl 231
                  pv++    DD LvP  +s eL ++L   +++++ 
  MMETSP1061-20121228|5689_1 241 GPVIIFHGTDDTLVPEEKSLELVRALklRNCDVTY 275
                 5899999***************9876114555555 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0     1e-08   5.2e-06      50     123 ..      71     142 ..      41     155 .. 0.83
   2 !    4.2   0.0    0.0079       4.1     201     259 ..     221     283 ..     196     300 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1e-08
   TIGR03056  50 llaarfrvvapdlPGhGftratarfrfslkamaedlakllaaedlsPdaviGhsaGaaialrlaldlpvrPrav 123
                 +l ++ r++a+d PG G   +t++   +l   a+d++++l +++l+   ++Ghs G+  +l l  + + + r++
  MMETSP1061-20121228|5689_1  71 ALRNNLRIIAIDYPGIGE--STFQEDRTLGGWADDVSEFLDHLGLERVRLLGHSLGGLHVLALLSNRSFKRRVI 142
                 688899********9885..6777779*******************************9999999999987754 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0079
   TIGR03056 201 lsmmaqWelaplqralpriavPvlliageedkavppdvskeaatrlpl....atlrevpGlGh 259
                    m ++ l+  +  lp  + Pv +  g +d  vp + s e+ + l l     t+  ++G  h
  MMETSP1061-20121228|5689_1 221 NEQMVRFALSKCETYLPEESGPVIIFHGTDDTLVPEEKSLELVRALKLrncdVTYISIEGSDH 283
                 46789999999******************************9998866222247777777776 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0     1e-08   5.3e-06       3     103 ..      25     126 ..      23     148 .. 0.82
   2 ?   -2.6   0.0       1.2     6e+02     208     224 ..     241     257 ..     234     298 .. 0.65

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1e-08
   TIGR02240   3 vfrtveldnqsirtavrpgk.egltpllifngi.ganlelvfpfvealdpeleviafdvpgvggsstprvpyrfpglaklaarmldyldygqvnvigvswgga 103
                   + veld+  i +    g+ e+  p+l   g+  + l +++   +al  +l +ia+d pg+g  st +    + g a  ++ +ld+l   +v  +g s gg 
  MMETSP1061-20121228|5689_1  25 TKKKVELDDGRILSYSECGNiESGMPVLFCLGLmTSSLAIMVAHHRALRNNLRIIAIDYPGIGE-STFQEDRTLGGWADDVSEFLDHLGLERVRLLGHSLGGL 126
                 56789999999999999987244578887777526789************************86.67888999****************************95 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.2
   TIGR02240 208 qptlvlagdddplipli 224
                  p +++ g dd l+p  
  MMETSP1061-20121228|5689_1 241 GPVIIFHGTDDTLVPEE 257
                 57788888888888853 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.8e-06    0.0009      24      89 ..      69     138 ..      58     181 .. 0.79
   2 !    5.6   0.0    0.0044       2.2     188     241 ..     240     297 ..     226     301 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.8e-06
   TIGR01738  24 veeLsahftlslvDLPGyGdsaelralslaevaeailaqapa....kaiwlGWsLGGLvalhlalthpdk 89 
                   +L+++ ++ ++D PG G+s++++   l   a+ + +  ++    +  +lG sLGGL  l l  + + k
  MMETSP1061-20121228|5689_1  69 HRALRNNLRIIAIDYPGIGESTFQEDRTLGGWADDVSEFLDHlgleRVRLLGHSLGGLHVLALLSNRSFK 138
                 568999***********************999999988877522226789********888776665554 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0044
   TIGR01738 188 svPvLrlyGqkDalvPakvvealdklap....qsellvlekaahaPflshaeafaall 241
                 s Pv+  +G+ D+lvP++   +l + ++        + +e++ h   +s++e++ + +
  MMETSP1061-20121228|5689_1 240 SGPVIIFHGTDDTLVPEEKSLELVRALKlrncDVTYISIEGSDHNNIFSKTENLINVM 297
                 6799************976666555555443356677799999**9999999987765 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   2.6e-08   1.3e-05       3      91 ..      50     134 ..      48     148 .. 0.78
   2 ?   -2.7   0.0       1.4   6.9e+02     208     242 ..     258     292 ..     235     310 .. 0.61

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 2.6e-08
   TIGR03695   3 pvlvlLHGflgskedwqalieeleekfsvlalDLpgHGkskslkekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalale 91 
                 pvl++L  +++s +   a++++l+++++++a+D pg G+s+ +   e  ++   a++ ++e l++l+ e+v L+G SlGG   lal  +
  MMETSP1061-20121228|5689_1  50 PVLFCLGLMTSSLAIMVAHHRALRNNLRIIAIDYPGIGESTFQ---EDRTLGGWADD-VSEFLDHLGLERVRLLGHSLGGLHVLALLSN 134
                 5666665555666777889999*******************99...67888888889.78899999**************765555544 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 1.4
   TIGR03695 208 kFkkiakemqkllpalklevieeaGHnihlenpea 242
                 k  ++ + ++ ++ ++++ +ie + Hn  + ++e+
  MMETSP1061-20121228|5689_1 258 KSLELVRALKLRNCDVTYISIEGSDHNNIFSKTEN 292
                 55555555565666666677777777665555554 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.6e-05    0.0082      60     134 ..      75     149 ..      30     175 .. 0.81
   2 ?    0.7   0.0       0.1        54     226     250 ..     243     267 ..     232     277 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-05
   TIGR03343  60 gyrvilkdapgfnksdevvmdeqrglv.naravkglmdaldiekahlvgnsmggatalnf..aleypdrlgklilmgp 134
                   r+i  d pg+  s     +e+r l   a  v  ++d l++e+  l+g s+gg   l +     +  r+ + +l+ p
  MMETSP1061-20121228|5689_1  75 NLRIIAIDYPGIGEST---FQEDRTLGgWADDVSEFLDHLGLERVRLLGHSLGGLHVLALlsNRSFKRRVIRTVLLCP 149
                 5799999999998764...4566666415899**********************987765215679999999999988 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.1
   TIGR03343 226 tlvtwgrddrfvpldhglklvanlp 250
                  ++  g dd +vp ++ l lv  l+
  MMETSP1061-20121228|5689_1 243 VIIFHGTDDTLVPEEKSLELVRALK 267
                 57889***************98765 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0     4e-06     0.002       3     110 ..      25     128 ..      23     138 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4e-06
   TIGR01250   3 iekiitldggyv.lftkvkeegekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldkfyllgqSwGglLa 110
                 ++k+++ld+g++ ++ ++++ + ++++l   G   ss   +   ++ l++++++i  D  G g+S   +d  +   t+  + d++ e  ++L+l+++ llg+S Ggl +
  MMETSP1061-20121228|5689_1  25 TKKKVELDDGRIlSYSECGNIESGMPVLFCLGLMTSSLAIMVAHHRALRNNLRIIAIDYPGIGESTFQED--R---TLGGWADDVSEFLDHLGLERVRLLGHSLGGLHV 128
                 567788877665269**************************************************98866..4...899***************************855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1754.97
//
Query:       MMETSP1061-20121228|5687_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.3    4.7   8.1        6.3    3.7   5.6    1.4  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   5.6    0.0015       6.3      96     143 ..     312     359 ..     295     385 .. 0.66

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0015
   TIGR00601  96 tptp.satpasvaekksaaPasaveeessaeeeatatalesedtsaese 143
                 t tp  a+ a+++e +saaP+ ++e  +++ +++ + a+++++t+++++
  MMETSP1061-20121228|5687_1 312 TKTPtIAPSAAPTETPSAAPSVSQE-PTQSMQPTISGAPTNIETQSPTS 359
                 3333235566666666666655543.35555666666666666666644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 1568.78
//
Query:       MMETSP1061-20121228|5695_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06   10.5   2.7      0.066   10.4   1.9    1.2  1  TIGR03943 TIGR03943: TIGR03943 family protein


Domain annotation for each model (and alignments):
>> TIGR03943  TIGR03943: TIGR03943 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   1.9   1.6e-05     0.066      22      86 ..       4      65 ..       1      83 [. 0.80

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.6e-05
   TIGR03943 22 vvllllalvqllrdvrekeeeaehhhehktklkrrlvylllllpillgllvppaalgsdtaaqrg 86
                +++++ a +++lr++r      +   e+++++++  +++ ++++i+++++v p+ +  dtaa+++
  MMETSP1061-20121228|5695_1  4 IAIAIAAAAAALRLFRALL---GGAVESQSPSEAIGIAVAIAVAIVVVVVVVPEEFHCDTAASSA 65
                4445555555555555554...67899999******************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       364  (0.0887372); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 503.96
//
Query:       MMETSP1061-20121228|5692_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-07   27.6   3.2      7e-07   27.3   2.2    1.1  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    4.3e-06   24.0  20.1    5.8e-06   23.6  13.9    1.1  1  TIGR02794 tolA_full: protein TolA
     0.0083   13.6  16.8      0.012   13.2  11.6    1.2  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
  ------ inclusion threshold ------
      0.023   11.0   6.0      0.029   10.7   4.1    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
      0.024   11.2   1.3      0.033   10.7   0.9    1.1  1  TIGR00939 2a57: nucleoside Transporter
      0.041   10.1  12.7      0.053    9.8   8.8    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        0.2    8.6   7.1       0.26    8.2   4.9    1.1  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
       0.23    8.4  14.1        0.3    8.0   9.8    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
       0.57    6.1   5.2       0.72    5.7   3.6    1.1  1  TIGR00930 2a30: K-Cl cotransporter
       0.64    7.1   6.7       0.94    6.5   4.6    1.2  1  TIGR02855 spore_yabG: sporulation peptidase YabG
       0.77    6.3   8.0        1.1    5.8   5.5    1.2  1  TIGR00806 rfc: reduced folate carrier
       0.96    5.5  10.6        1.3    5.0   7.4    1.1  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
        1.2    5.3  11.4        1.7    4.9   7.9    1.1  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
        1.3    5.4   9.1        1.8    5.0   6.3    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit
        3.6    5.7  22.1        6.9    4.8  15.3    1.4  1  TIGR00621 ssb: single-stranded DNA-binding protein


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   2.2   2.6e-09     7e-07      49     163 ..      65     200 ..      14     219 .. 0.65

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 2.6e-09
   TIGR03499  49 aaideee...sasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae.........................eelrkelkalkellekqlselal....eeedperakllkklleagvseelarellek 163
                 a     e   ++++++ +++ +++++++++++++++++++++++++++k+++++q+        +                         + ++   k  k+++ ++ ++l+l     +++p +++++k l+ ag+ +  ++++++ 
  MMETSP1061-20121228|5692_1  65 AQT---EgtpQQKQQQGQRQQQQQQQQQQQQQQQAQQQQQQAQQRQRQKNQKQKQN--------QhttxlnddfhpvnkvgvwtmlndnmDYVKGAAKLGKAVVARTKTPLDLvvmeLKSKPLGDDMWKILEPAGFLKCSVESIAAP 200
                 222...22223333333333333333333333333333333333333333333333........13334555689********99988887777777777777777777776699999999**************999999888765 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6  13.9   2.1e-08   5.8e-06      15     108 ..      32     118 ..      25     126 .. 0.64

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 2.1e-08
   TIGR02794  15 lillllgsltesvepepeggeiiqAvlvDpaavaqqanrlqqqekkaakkepkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaae 108
                 l+  ++  +t++  p+ ++  ++++   D +a+++q + ++qq++++ +++      +q++q++++qq+++a+++q++ q+rq++ ++++++ +
  MMETSP1061-20121228|5692_1  32 LLSAIVVLITFTLHPSEVM-GTLDSIRFDANAAMAQTEGTPQQKQQQGQRQ------QQQQQQQQQQQQQQAQQQQQQAQQRQRQKNQKQKQNQ 118
                 3333444566777777777.4555566999999999999999999988888......4555555666666666666666777666644555444 PP

>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2  11.6   4.2e-05     0.012      77     132 ..      64     121 ..      50     172 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.2e-05
   TIGR03789  77 vande..alkqaqseiakqeqqlvaltekqqaleqleaeyqqaqkeletlqqeqeqll 132
                 +a++e    +++q+ +++q+qq ++++++qq+ +q++++ qq q + +++q++++ ++
  MMETSP1061-20121228|5692_1  64 MAQTEgtPQQKQQQGQRQQQQQQQQQQQQQQQAQQQQQQAQQRQRQKNQKQKQNQHTT 121
                 5555532234456666777777677777777777776666666666666666655544 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   4.1   0.00011     0.029      24      91 ..      50     116 ..      26     141 .. 0.43

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00011
   TIGR03319  24 ekkleeaeeeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeek 91 
                   +l++++ +a++ + +++   ++k+++   ++++++++++ ++++++++++++ q+++++ +qk+++
  MMETSP1061-20121228|5692_1  50 MGTLDSIRFDANAAMAQTEGTPQQKQQQGQRQQQQQQQQQQ-QQQQQAQQQQQQAQQRQRQKNQKQKQ 116
                 44555555555554444443333333333222222222222.22222222222222222222222222 PP

>> TIGR00939  2a57: nucleoside Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.9   0.00012     0.033     169     260 ..      20     117 ..      11     141 .. 0.44

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00012
   TIGR00939 169 glkksaliYFi..lavvvilisivlyl..llrklkfarkyl...........ekkldkeaqedetkkelrskaeendepakgdkeskteelsaekepeskeeeevel 260
                  l+++  iYF   l+ +v+li++ l    ++  l+ +r+ +           +         ++ ++  r++++++++ +++++++++++++a++ +++k++++++ 
  MMETSP1061-20121228|5692_1  20 ILRNQWVIYFLflLSAIVVLITFTLHPseVMGTLDSIRFDAnaamaqtegtpQ---------QKQQQGQRQQQQQQQQQQQQQQQAQQQQQQAQQRQRQKNQKQKQN 117
                 56777788864226677777777765422455566666666444443332221.........222222222222222222222222222333332333333333331 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   8.8   0.00019     0.053     326     378 ..      71     122 ..      53     175 .. 0.46

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00019
   TIGR02442 326 leekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeae 378
                 +++k+++ + ++++++++ +++++++ +q++++ ++++ +++++++++++ + 
  MMETSP1061-20121228|5692_1  71 PQQKQQQGQRQQQQQQQQ-QQQQQQQAQQQQQQAQQRQRQKNQKQKQNQHTTX 122
                 222222222222222222.2222222222233333333333333333333332 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.9   0.00095      0.26      50     118 ..      49     117 ..      39     163 .. 0.44

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00095
   TIGR01347  50 adGvleellekegdtvesgevlaeleessaaaeaasekskeekeekaaakaekakeaaekkkalspaar 118
                 + G+l+++ ++ ++ +   e   + ++++ + +++++++++++++++a+++++++++++++k+ ++ ++
  MMETSP1061-20121228|5692_1  49 VMGTLDSIRFDANAAMAQTEGTPQQKQQQGQRQQQQQQQQQQQQQQQAQQQQQQAQQRQRQKNQKQKQN 117
                 444444444444444433333333332222222222222222222222222221111111111111111 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   9.8    0.0011       0.3     445     498 ..      65     120 ..      41     184 .. 0.44

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0011
   TIGR01628 445 alaqlaqqrlqaqgrrnlnnrnrnv..lgnmnkkqqnaaskanqanvkaqpqaqsk 498
                 a ++ + q++q+qg+r+ ++++++   +++++++qq++a+++++++ ++q q q+ 
  MMETSP1061-20121228|5692_1  65 AQTEGTPQQKQQQGQRQQQQQQQQQqqQQQQAQQQQQQAQQRQRQKNQKQKQNQHT 120
                 22222222222222222221111110011111111111111111111111111111 PP

>> TIGR00930  2a30: K-Cl cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   3.6    0.0026      0.72       4      79 ..      59     134 ..      46     179 .. 0.53

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0026
   TIGR00930   4 eavpklesyenekakeeeklnrpsleelldlldkvsslleklaseteeeqeakeheea.eeaeetkekekakavklG 79 
                 +a+++++++e + ++++++ +r++ ++++++ ++ +++ ++++++ ++ q++k+++++ +++++  +++ + + k+G
  MMETSP1061-20121228|5692_1  59 DANAAMAQTEGTPQQKQQQGQRQQQQQQQQQQQQ-QQQAQQQQQQAQQRQRQKNQKQKqNQHTTXLNDDFHPVNKVG 134
                 4445555555555444444444444444433333.222333333333333333322220222333333333444444 PP

>> TIGR02855  spore_yabG: sporulation peptidase YabG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.6    0.0034      0.94      38      96 ..      56     117 ..      39     135 .. 0.53

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0034
   TIGR02855  38 lrliadakledlekvkeeekkkrkkeekekieeslkllrqdrklk...kekkeyratekyke 96 
                 +r+ a+a +   e   ++++++ ++++++++++  ++ +q ++++   +++++ ++++++++
  MMETSP1061-20121228|5692_1  56 IRFDANAAMAQTEGTPQQKQQQGQRQQQQQQQQQQQQQQQAQQQQqqaQQRQRQKNQKQKQN 117
                 66666666666665555555554444444444433333333333300022222222222222 PP

>> TIGR00806  rfc: reduced folate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.5    0.0041       1.1     420     502 ..      22     110 ..      16     127 .. 0.35

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0041
   TIGR00806 420 rkqfklysvyflvls.....iiillgavldglrylkrgreqelaqaqelr.speeeavqalslqdrdlraaqpsavqlleedatveddr 502
                 r+q  +y+++ l        +++    v+++l  ++   +  +aq+++   + +++ ++++  q ++++++q +a+q  ++  + ++++
  MMETSP1061-20121228|5692_1  22 RNQWVIYFLFLLSAIvvlitFTLHPSEVMGTLDSIRFDANAAMAQTEGTPqQKQQQGQRQQQQQQQQQQQQQQQAQQQQQQAQQRQRQK 110
                 67777776643321111111222223344444444444444333333332112222222222222222222222222222222111111 PP

>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.4    0.0049       1.3     658     709 ..      66     120 ..      51     151 .. 0.53

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0049
   TIGR04154 658 s...allveveeeeaseqslkvetkeeeenaseaeaaaeadnaasaaeafaeeee 709
                 +   +  +++++ ++++q++++++++++++a++++++a+++++++++++++++++
  MMETSP1061-20121228|5692_1  66 QtegTPQQKQQQGQRQQQQQQQQQQQQQQQAQQQQQQAQQRQRQKNQKQKQNQHT 120
                 2222222223333333333333344444444444444444444444444333333 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.9     0.006       1.7      72     134 ..      71     133 ..      54     156 .. 0.51

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.006
   TIGR03490  72 deeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqadepnndhadqknnnkvdfsdldkl 134
                  +++ ++ + ++++++ ++++++++ ++++++  ++++  ++++++++++   ++df  ++k+
  MMETSP1061-20121228|5692_1  71 PQQKQQQGQRQQQQQQQQQQQQQQQAQQQQQQAQQRQRQKNQKQKQNQHTTXLNDDFHPVNKV 133
                 222222222222223333333333333333333322222233334666666778888888876 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   6.3    0.0065       1.8     215     268 ..      71     125 ..      46     139 .. 0.52

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0065
   TIGR01651 215 tdddqpredeqe.eegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsd 268
                  +++q +++ q+ ++ +++++++++++ ++++a +++ ++++++  + +   l+d
  MMETSP1061-20121228|5692_1  71 PQQKQQQGQRQQqQQQQQQQQQQQQAQQQQQQAQQRQRQKNQKQKQNQHTTXLND 125
                 2222222222220223333444555555566666666665555555544444444 PP

>> TIGR00621  ssb: single-stranded DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  15.3     0.025       6.9     112     156 ..      73     119 ..      52     130 .. 0.34

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.025
   TIGR00621 112 akaqggekelneesges..qqqapqesqqeaqatgkekassapqkql 156
                 +k+q+g+++++++++++  qqq++q++qq+aq+ + +k+++++q+q 
  MMETSP1061-20121228|5692_1  73 QKQQQGQRQQQQQQQQQqqQQQQAQQQQQQAQQRQRQKNQKQKQNQH 119
                 22233332222222222112222222222222222222222222223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       850  (0.207216); expected 82.0 (0.02)
Passed bias filter:                      288  (0.0702097); expected 82.0 (0.02)
Passed Vit filter:                        91  (0.0221843); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.43u 0.19s 00:00:00.62 Elapsed: 00:00:00.44
# Mc/sec: 1091.91
//
Query:       MMETSP1061-20121228|5696_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1602.72
//
Query:       MMETSP1061-20121228|5697_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|5691_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-29   98.9   0.0    1.2e-28   98.1   0.0    1.3  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    8.3e-26   88.8   0.0    1.5e-25   88.0   0.0    1.3  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.5e-24   84.4   0.0    2.4e-24   83.8   0.0    1.2  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.5e-24   84.1   0.0    4.1e-24   83.4   0.0    1.2  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.6e-24   84.0   0.0    4.2e-24   83.3   0.0    1.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    5.9e-24   82.7   0.0    9.2e-24   82.1   0.0    1.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    8.3e-24   82.3   0.0    1.3e-23   81.6   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    8.8e-24   82.2   0.1    1.3e-23   81.6   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
      2e-23   80.6   0.2    3.4e-23   79.9   0.1    1.3  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
      6e-23   79.5   0.0      1e-22   78.7   0.0    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    6.3e-23   79.3   0.0    1.1e-22   78.6   0.0    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.2e-22   78.4   0.0    1.9e-22   77.7   0.0    1.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      4e-22   76.6   0.0    5.7e-22   76.1   0.0    1.1  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    5.6e-22   76.5   4.0    3.6e-18   64.0   0.2    3.0  3  TIGR00056 TIGR00056: conserved hypothetical protein
    1.7e-21   74.6   0.0    2.9e-21   73.8   0.0    1.3  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    3.5e-21   73.6   0.0    5.5e-21   73.0   0.0    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.9e-20   70.6   0.0    4.9e-20   69.8   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    8.8e-20   68.8   0.0    1.2e-19   68.3   0.0    1.1  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.3e-19   67.5   0.0      4e-19   66.7   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      5e-19   66.3   0.1    2.9e-18   63.8   0.1    1.9  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    9.1e-19   65.6   0.0    1.8e-18   64.6   0.0    1.4  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.1e-18   65.6   0.0    1.7e-18   65.0   0.0    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.4e-18   64.1   0.0    3.8e-18   63.4   0.0    1.2  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    3.7e-18   63.0   0.0    5.9e-18   62.3   0.0    1.2  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    4.3e-18   63.0   0.0    6.5e-18   62.4   0.0    1.2  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.5e-18   63.5   0.0    8.3e-18   62.6   0.0    1.3  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    9.8e-18   62.2   0.0    1.6e-17   61.5   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      1e-17   61.8   0.0    1.6e-17   61.2   0.0    1.2  1  TIGR00955 3a01204: pigment precursor permease
    1.9e-17   61.4   0.0    2.8e-17   60.8   0.0    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.3e-17   60.8   0.0    3.5e-17   60.2   0.0    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    6.5e-17   59.4   0.0    1.1e-16   58.6   0.0    1.4  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.2e-16   58.1   0.1    1.6e-15   55.2   0.0    2.1  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    4.7e-16   56.2   0.0    7.1e-16   55.6   0.0    1.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    3.9e-15   53.9   0.0    6.4e-15   53.2   0.0    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.3e-14   51.2   0.0    2.1e-14   50.5   0.0    1.2  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.3e-14   50.6   0.0    3.3e-14   50.1   0.0    1.1  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    4.8e-14   49.4   0.0    7.9e-14   48.7   0.0    1.3  1  TIGR00958 3a01208: antigen peptide transporter 2
      7e-14   49.6   0.1    4.8e-07   27.3   0.0    3.1  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.3e-13   47.9   0.0      5e-13   46.8   0.0    1.5  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.6e-13   48.0   0.1    3.5e-10   37.8   0.0    2.4  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    8.7e-13   45.3   0.0    4.5e-12   43.0   0.0    1.8  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
      2e-12   44.4   0.0    3.4e-12   43.6   0.0    1.3  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.1e-12   43.4   0.0    4.9e-12   42.8   0.0    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.1e-11   40.1   0.2    8.6e-11   39.4   0.1    1.3  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.1e-10   36.8   0.0    1.5e-10   36.4   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    1.7e-10   38.6   0.0    2.8e-10   37.9   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.5e-10   37.4   0.0    3.6e-10   36.8   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    7.7e-10   35.7   0.0    1.4e-09   34.9   0.0    1.3  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.5e-09   34.3   0.0    1.9e-08   31.8   0.0    1.9  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.1e-08   32.0   0.0    0.00012   18.6   0.0    2.2  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.1e-08   32.7   0.0    2.8e-08   31.4   0.0    1.7  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.5e-08   31.5   0.0    2.3e-08   30.9   0.0    1.1  1  TIGR01192 chvA: glucan exporter ATP-binding protein
      2e-06   24.1   0.0      3e-06   23.5   0.0    1.2  1  TIGR00630 uvra: excinuclease ABC subunit A
    0.00017   17.1   0.0    0.00025   16.6   0.0    1.1  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
      0.001   14.4   0.0      0.018   10.2   0.0    1.9  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
     0.0039   14.0   0.0     0.0057   13.4   0.0    1.1  1  TIGR00634 recN: DNA repair protein RecN
  ------ inclusion threshold ------
      0.011   12.1   0.0      0.023   11.1   0.0    1.5  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      0.022   11.0   0.0        2.1    4.4   0.0    2.1  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      0.028    9.9   0.7       0.05    9.0   0.0    1.6  2  TIGR00606 rad50: rad50
       0.03   11.7   0.1      0.085   10.2   0.0    1.7  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN


Domain annotation for each model (and alignments):
>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.0   1.7e-30   1.2e-28      23     206 ..      24     212 ..      22     226 .. 0.89

  Alignments for each domain:
  == domain 1    score: 98.1 bits;  conditional E-value: 1.7e-30
   TIGR02982  23 dinleiepgeiviltGpsGsGkttlltligglr..svqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsak..eakakaeelleavgle..erldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild 206
                 +i+++++pg  v l GpsG Gktt+ t+++g+   s q+  l+ l+ e++   +   + vr + G++fq+  ll+ lt+  n+ +al+l+e++  +  ++ a+ ++ll +vgl+  +  ++ p++lsgG  +rv +a  l++r ++++ deP + ld+ s++ v   l +l + q t++ll+ h++ + +
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHepSHQDSLLRKLQLEVSCDWDP-DIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDIFCTpvARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHEPHLSK 212
                 58899***************************83357888899999888766555.568*********************************8766115666778*******972268999***************************************************************988765 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.0   0.0   2.2e-27   1.5e-25     333     522 ..      16     213 ..       7     217 .. 0.89

  Alignments for each domain:
  == domain 1    score: 88.0 bits;  conditional E-value: 2.2e-27
   TIGR02857 333 grk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaela...eldad.swrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalael 522
                 g+  p  ++++++++pg+ v l G+SG GK+t+  +l g+ ep +   l+   +l+   ++d+d   r++++ + Q+ +l+++ tva n+++a k  ++     ++++a +++l+++++  + +   + +++LSgG  +R+ LA  l++ +++++lDEP   LD  +++ v ++l +l   ++ ++ll++H+++l++l
  MMETSP1061-20121228|5691_1  16 GAGaPFGESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvscDWDPDiPVRERCGVLFQQTTLLDElTVAGNLAVALKLHEDIFCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRktQKTALLLISHEPHLSKL 213
                 5555677899***************************************98887753336777756899999988887777544********************************************************************************************998545667899*****99876 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.8   0.0   3.5e-26   2.4e-24      16     199 ..      24     213 ..      21     217 .. 0.90

  Alignments for each domain:
  == domain 1    score: 83.8 bits;  conditional E-value: 3.5e-26
   TIGR03608  16 klslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkk...skkekekkkkevlekvgl..ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegkt.iiivtHdpevaek 199
                 +++++++ G++v + G sG GK+t+  +l+ + ++++++ +l + + +   +      +re+ g lFq+ +Ll++ tv  nl +alkl++    +   ++ ++k++l++vgl   k+ +k   elsgG   Rv la  l +  ++i+ DEP + LD+ + e v + l  l+++ kt ++++ H+p++++ 
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDWDPDIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDifcTPVARDARIKQLLDTVGLnyGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTaLLLISHEPHLSKL 213
                 578999******************************99999999997766777888889****************************998622244588999**********6446778899************************************************998887367899**999875 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0     6e-26   4.1e-24      20     200 ..      23     210 ..      11     226 .. 0.87

  Alignments for each domain:
  == domain 1    score: 83.4 bits;  conditional E-value: 6e-26
   TIGR00960  20 dnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklr..drevpflrrqiGivfqdfkllsdrtvydnvalalri...iGvkgreieervsaalekvGlk..dkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGtt.vlvathdenl 200
                 + ++++++ G+ v l G+sG Gk+t+  +++g+++ps  + ++ + +l+     d ++p +r + G++fq   ll + tv  n+a+al++   i  ++ + + r+++ l++vGl+  + a++lP +lsgG  +rv++a  + ++  +++ deP + ld   ++++ + l +++++  t +l+ +h+ +l
  MMETSP1061-20121228|5691_1  23 ESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCdwDPDIP-VRERCGVLFQQTTLLDELTVAGNLAVALKLhedIFCTPVARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTaLLLISHEPHL 210
                 6799************************************9999988766551156777.699*************************98555668899999************8434689*********************************************99999998876615667888766 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.3   0.0   6.1e-26   4.2e-24      28     215 ..      23     212 ..      16     253 .. 0.88

  Alignments for each domain:
  == domain 1    score: 83.3 bits;  conditional E-value: 6.1e-26
   TIGR02769  28 dnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdla.kldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsl..deserkariaellelvelrs.evldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvq 215
                 + +++sl+ G +v l G sG Gk+t+a +l G+ +P++ +   r  +l    d +    +r    ++fq +  ++    +v   ++  l+  +++     +r ari++ll++v+l+  ++++klP++lsGG  +r+++a  la + ++ivlde  + ld v   ++ + l +l++   +a l+i+h+ +l +
  MMETSP1061-20121228|5691_1  23 ESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvSCDWDPDIPVRERCGVLFQQT--TLLDELTVAGNLAVALKLHEDIfcTPVARDARIKQLLDTVGLNYgKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHEPHLSK 212
                 57999********************************9999999888852688899999**********86..5778889999999999888887225669**************963789*****************************************************************966544 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   1.3e-25   9.2e-24      11     182 ..      24     206 ..      22     212 .. 0.84

  Alignments for each domain:
  == domain 1    score: 82.1 bits;  conditional E-value: 1.3e-25
   TIGR01188  11 gvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr....epd.evRrsigvvpqkasvdedLtarenlellgelyg...lpkkeaeeraeellelvelkea..adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltth 182
                 +++++++ g+ + l GP G GKtt+  +Lt++ +P+   + +    +      +pd  vR++ gv +q++++ ++Lt   nl +  +l++       ++++r+++ll++v l +   a+k   ++sgGm rr+ la  l ++ +v+ LDEP +GLD+ +++ + + +  l+k+ ++++ll +h
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVscdwDPDiPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEdifCTPVARDARIKQLLDTVGLNYGkdAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTqKTALLLISH 206
                 799**********************************999988766543112256688***********************98777666433234567899***********97611557789**************************************9988877777773777778887 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   1.9e-25   1.3e-23      19     204 ..      23     215 ..      16     226 .. 0.86

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 1.9e-25
   TIGR02673  19 kdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarl..rerelpllRrkigvvfqDfkllkdrtvlenvalalevrgk...keeeiqkrveevlelvgle..dkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnk.rGttvivathdeelvervk 204
                 +++++++++g+ + l G+sG Gktt+  +l+g+++ps+ +  +   +++     + ++p +R + gv+fq   ll++ tv+ n+a+al+++ +   +  + + r++++l++vgl+  + a++lp+elsgG   Rv +a  + ++ ++++ DeP   lD   +e + + l +l k + t++++ +h+ +l + v+
  MMETSP1061-20121228|5691_1  23 ESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVScdWDPDIP-VRERCGVLFQQTTLLDELTVAGNLAVALKLHEDifcTPVARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKtQKTALLLISHEPHLSKLVH 215
                 5799*********************************9998888777665411456677.7***************************998763324566789***********833457789******************************************998888766166778999***99987764 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0     2e-25   1.3e-23      22     194 ..      24     207 ..      20     214 .. 0.84

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 2e-25
   TIGR03265  22 dislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillg..grdit....rlppqkrdyGivfqsYaLfPnltvaeniayGLknkk...lkreevaerveelLelvgls..gseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd 194
                 +i++s++ g  v l GPsG Gktt+  +++G+ +++    ll   + +++       p +   G++fq  +L  +ltva n+a+ Lk ++    +   +++r+++lL++vgl+  + ++k P+ lsGG  +rv La  la +  +++LDeP+  LD    e + +el +l++  + + +++ h+
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRklQLEVScdwdPDIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEdifCTPVARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHE 207
                 7999****************************9988765444401334442222233556668*********************99876522246678899***********83345689***************************************************9999999999997 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.9   0.1     5e-25   3.4e-23     351     529 ..      22     207 ..       6     208 .. 0.86

  Alignments for each domain:
  == domain 1    score: 79.9 bits;  conditional E-value: 5e-25
   TIGR02868 351 lkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvasl...s.esevrrvvsvlaqdaHlFd.ttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthr 529
                  + +++ l+pG+ v++ G+sG GK+t++ +l+g+ +p++ + +l  +++      + +  vr++  vl q+  l d  tv  Nl +a +  +d   + + + ++++++l+ +   +  + ++  + lSGG+ +R+ lA  L +  +v++LDEP  +LD   +e + ++L+    +++++ +l++h+
  MMETSP1061-20121228|5691_1  22 GESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVScdwDpDIPVRERCGVLFQQTTLLDeLTVAGNLAVALKLHEDIFCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVrlRKTQKTALLLISHE 207
                 5789****************************************9988753311121346999988887777777626*********************************66666678899999********************************************965666777799****8 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   1.5e-24     1e-22       3     174 ..      24     207 ..      23     219 .. 0.86

  Alignments for each domain:
  == domain 1    score: 78.7 bits;  conditional E-value: 1.5e-24
   TIGR01184   3 dvdleikkgefislighsgcgkstllnliaglekptsgavilegkeit........epgpdrm.vvfqnysllpwltvrenialavdavlrdlsks.erreiveehielvglr..eaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                  ++++++ g  + l g sg gk+t+  +++g+++p++    l   +++         p  +r  v+fq+ +ll  ltv  n+a+a++       +   r++ +++ ++ vgl+  + a+k p++lsggm +rv +a  l+ r ++++ldepf  ld+++ e +  +l+++ + ++++ l+++h+
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvscdwdpdIPVRERCgVLFQQTTLLDELTVAGNLAVALKLHEDIFCTPvARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHE 207
                 689999******************************998887776664222121113555665589********************9888776654267889*********97336799***************************************************************97 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0   1.6e-24   1.1e-22      18     190 ..      24     207 ..      20     234 .. 0.83

  Alignments for each domain:
  == domain 1    score: 78.6 bits;  conditional E-value: 1.6e-24
   TIGR00968  18 dvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGr......d.vtrvkvrdreiGfvfqhyalfkhltvrdniafGleir...kkdkakikakveellelvqle..klgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthd 190
                 +++++++ Gs v l GpsG Gk+t+  v++G+++p     ll+        d    + vr+r  G +fq+ +l+  ltv  n+a  l+++     +  +  a++++ll+ v+l+  k +++ ps+lsGG  +rv la  la   +v++ldepf+ ld+   + + + l +l +  k + ++++h+
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLqlevscDwDPDIPVRER-CGVLFQQTTLLDELTVAGNLAVALKLHediFCTPVARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHE 207
                 79999***************************998766544443201000120234555555.8*************************944435788999***********9822445688************************************999999999999999888888888886 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   2.8e-24   1.9e-22      23     207 ..      24     213 ..      21     218 .. 0.90

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 2.8e-24
   TIGR02211  23 gvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskk...eakerakellekvgle..krinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakk 207
                  ++++++ g  v + G sG Gk+t+  +l+g+ +p++ + ll+  +l+   + +      ++ G ++q   ll ++t+  n+a+ l + +   +     + r k+ll+ vgl+  k ++k pselsGG  +rv +a  l ++ ++++ deP + ld+ +a+ + + l +l+k+++tall+++h+ +l k 
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDWDPDIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDIFCtpvARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHEPHLSKL 213
                 699********************************************9988888777677889**********************99988655411145567789******9743667788****************************************************************99875 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   8.4e-24   5.7e-22      11     189 ..      24     207 ..      15     223 .. 0.91

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 8.4e-24
   TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellk...ideqerkekalealklvdl..eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                 +++++++ G  + + G+sG Gk+t+  +l  + eP+    l+   ++    d +     r + ++++q+ +l+   t+  n++++l+l +        r  + +++l  v+l   + +++ P elsGGm +rv la  la+   ++++de+f+ ld +  + +  elv+l+k+ + ++++i+h+
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDWDPDIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEdifCTPVARDARIKQLLDTVGLnyGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHE 207
                 78999999******************************999998887766666665567899**************************864435678999************55567899***************************************************************6 PP

>> TIGR00056  TIGR00056: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1       1.3        90      44      93 ..     262     311 ..     246     347 .. 0.83
   2 !   64.0   0.2   5.2e-20   3.6e-18      91     193 ..     357     463 ..     325     472 .. 0.85
   3 !   11.5   0.0   0.00052     0.036     201     257 ..     544     602 ..     525     604 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 1.3
   TIGR00056  44 llkqlnvvgvesllivlvtslliGmvlalqgalelqafgAelligelval 93 
                 ++++l    + sl+++l++ +  G+++++ +a  lq++     + +l+ +
  MMETSP1061-20121228|5691_1 262 FMERLVDYVFYSLPLILMAFMACGLAISMLSADILQRLDISNKVLDLIDV 311
                 788888889999******9999******9999999998887777777655 PP

  == domain 2    score: 64.0 bits;  conditional E-value: 5.2e-20
   TIGR00056  91 valsllRElgPvltalvvagRvgSaltAeiGlmkiteqldalevlavdPleflvlPRvlAlvivlPlLtvlslvvgi.lGGal...vakkllgidselfleklqdav 193
                 +a++ + E+gP+ltal++ gR g +++ ++G+m++t+q + l+vl+vdP  + ++P vlA+ i  P+Lt++ +++++ lGG++    + + +g +++++++ lq+++
  MMETSP1061-20121228|5691_1 357 LAKLFVLEVGPLLTALLLCGRIGGSYAGKVGTMQATNQNNLLRVLGVDPRWWTLAPSVLAASIASPILTTMGTALALgLGGIVgplYGLEKIGYANRSYWSDLQESI 463
                 5677788****************************************************************99888855655421156777888999*****99976 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00052
   TIGR00056 201 glvKavffgvaialigvyyGfetkg..kaegvgkattrsVVtsllvillldfvlsiilf 257
                  ++Ka ++ ++i  ++   G + k+  +++gv   +t sVV s l+++l d+ +s +l+
  MMETSP1061-20121228|5691_1 544 HFIKAEVYILIILGVAEWAGRYYKPnlTPRGVPSVITLSVVMSGLLVILADWGFSQLLM 602
                 589*****************8888744689**********************9998764 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   4.3e-23   2.9e-21      19     191 ..      24     206 ..      20     246 .. 0.79

  Alignments for each domain:
  == domain 1    score: 73.8 bits;  conditional E-value: 4.3e-23
   TIGR03864  19 dvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlr....rap.kealarlGvvfqqstlDldlsveqnlryhaaLhG...lsraeaeerieealarlglae.raeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWath 191
                 ++++++++g++v L Gp G Gk+t+ ++lt++ e ++ +  +  l+l+     +p   + +r Gv fqq+tl  +l+v+ nl    +Lh     +  +  +ri+++l+ +gl+  ++++k   eL+GG  rrv +a  l  + ++++lDe+  GLD+ s + + +e+ +l ++++ ++L   h
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvscdWDPdIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEdifCTPVARDARIKQLLDTVGLNYgKDAHKlPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISH 206
                 689*****************************998755544444333311113331346689********************9999999543223344568***********851444453689***********************************************999999998765 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.0   0.0   8.1e-23   5.5e-21      18     190 ..      26     209 ..      21     223 .. 0.82

  Alignments for each domain:
  == domain 1    score: 73.0 bits;  conditional E-value: 8.1e-23
   TIGR01277  18 dlsveaGervailGesGaGkstllnliaGflepasGeikvndk......dhtrsapyerpvsmlfqennlfahltvrqniglG..lkpglklnav.qkekvedvarqvGia..dylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsls 190
                 ++s++ G  v + G+sG Gk+t+ ++++G+ ep + +  +         d     p +    +lfq+  l+  ltv+ n+++   l+  +  + v +  +++++   vG++  +  ++lp elsGG  +rv la  l + k +++ldepf+ ld    e +   + +l + +k +lll++h+++
  MMETSP1061-20121228|5691_1  26 EFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLqlevscDWDPDIPVRERCGVLFQQTTLLDELTVAGNLAVAlkLHEDIFCTPVaRDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHEPH 209
                 456789***************************9876555443010011344456899999******************876511566777776615569*********962256789*************************************999999999999**************864 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   7.1e-22   4.9e-20      20     208 ..      24     210 ..      18     232 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 7.1e-22
   TIGR02315  20 nvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklk.kkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervgla..elaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdl 208
                  +++++++G  v + G+sG Gk+t+   + +++e+s+ + ll++ +++          +r++ g++fq+  l+++ltv  n+ + +l  ++     +   + +  ++  +lL+ vgl+  + a+k  ++LsGG   Rv +a  laq+ ++i+ DEP + LD  s++ v + l r+ k ++ + ++  H+ +l
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCdWDPDIPVRERCGVLFQQTTLLDELTVAGNLAV-ALKLHED----IFCTPVARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHEPHL 210
                 699*********************************99999998888765523445579*******************988543.3444443....33445566678899******97446788999************************************************99998888877776555 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.3   0.0   1.8e-21   1.2e-19       2     160 ..      38     207 ..      37     210 .. 0.86

  Alignments for each domain:
  == domain 1    score: 68.3 bits;  conditional E-value: 1.8e-21
   TIGR01187   2 LGpsGsGkttlLrllaGleeldsGkilldgedvtevp......aekrsvnvvfqsyaLfPhmtveenvafgLkmrk...vpkaeikervkeaLelvqle..efakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthD 160
                  GpsG Gktt+  +l G++e+++   ll + ++          + +   +v+fq+  L   +tv+ n+a +Lk+++        +++r+k++L++v l+  + a++ ps+lsGG  +rv la  ++++ ++++lDep++ LD    + +  el++l++    +++l+ h+
  MMETSP1061-20121228|5691_1  38 RGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCdwdpdiPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEdifCTPVARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHE 207
                 69********************999998876654332111122677889************************9973333567799**********98633678999*************************************************99988888888885 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   5.8e-21     4e-19      28     198 ..      26     206 ..      18     215 .. 0.81

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 5.8e-21
   TIGR03258  28 sleieaGellallGksGsGkttllravaGfvkadG.....Grllv.adrdlthlppykrnlallvqnyalfphlkveenvafGlrarkqs.kaliae..rvadalklvql..sdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvth 198
                  + +++G  + l G+sG Gktt+  +++G+ +++       +l +    d     p +   ++l+q+ +l+  l+v  n+a  l+ +     + +a+  r+ + l +v+l  +  a++lp++lsGG+ +rv la  l+ r +v++ldep++ ld+   + v  el +l +   + ++l ++h
  MMETSP1061-20121228|5691_1  26 EFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHqdsllRKLQLeVSCDWDPDIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDIfCTPVARdaRIKQLLDTVGLnyGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKT-QKTALLLISH 206
                 567899*************************998853333222221234555556889999***********************9987541333443339********98446889***************************************************9765.3445555555 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8   0.1   4.3e-20   2.9e-18      18     210 ..      24     211 ..      21     250 .. 0.85

  Alignments for each domain:
  == domain 1    score: 63.8 bits;  conditional E-value: 4.3e-20
   TIGR03005  18 glelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGv..araeaekravelldmvGla..dkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfa 210
                  +e+++++G  v l GpsG Gk+ti  +l  + + ++    +      +++      v  d      vre+ G++fq+  l+   tv  n++ a  l   +  ++ + ++r  +lld vGl   + a++lp++lsGG  +rv +a  la r +v+++de+ + ld    e v   l rl + ++ ++ll++he  ++
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLL-----RKLQ----LEVSCDWDPDIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDIfcTPVARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHEPHLS 211
                 678999*********************998876655444333.....2222....225666666778*************************998777766225666778999********721455679**************************************************************97665 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0   2.6e-20   1.8e-18       4     185 ..      24     207 ..      22     217 .. 0.83

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 2.6e-20
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldkeltkts.GeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkalekls..kqak.elivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithD 185
                  +++sl+ g ++ l G sG Gk++ a+ + g+ ++  + +   +++l+     +  +  re + +l +  + ++  lt++ +l  +lk +e +     a+ ++i + l+ vgL+ ++   +k p elsGGm  Rv +al l+ +  +++ DeP t lD v++  v ++l +lr+++ +++lli+h+
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLlRKLQLEVSCDWDPDIPVRERCGVLFQQTTLLDE-LTVAGNLAVALKLHEDIFctPVARdARIKQLLDTVGLNYGKD-AHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHE 207
                 689*****************************9987776641455555444444477777777777766666666.57888888999999987644445514688899******8887.5889**************************************************************6 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   2.5e-20   1.7e-18      20     201 ..      24     207 ..      21     217 .. 0.87

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 2.5e-20
   TIGR03411  20 dlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk..dltklkeaei.arlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLe..ekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelak..ersvvvvehD 201
                 ++++s+++g++  + Gp G Gktt+  v+tG  +p++ + l+++   +++   + +i +r   g  fq++++++eltv+ nl +alk +++++ + +     ++++ri+++l+++gL+  + a+k  ++Ls G   ++ +++ l+q+ ++++lDeP +G+ +   e +a+ l +l+k  +++++++ h+
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLqlEVSCDWDPDIpVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDIFCTPV-----ARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKtqKTALLLISHE 207
                 68999*******************************99999998823444444555548999999************************99987764.....55789*********97336778899******************************************99999976225678999997 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   5.5e-20   3.8e-18      45     224 ..      27     207 ..      21     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 5.5e-20
   TIGR03415  45 ldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsG...vakaerrkrveeqlelvglaeWad..kkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                 ++++ G  + l G sG Gk+++   + g+   s  + l+++ + ev   +cd +    +r +r  ++fq+ +ll  +tv+ n+a+ l l+     +   r  r+++ l+ vgl+  +d  k + elsGGm +rv la  +a    ++++dePf+ ld +  + +  el++l+k+ k +++++sh+
  MMETSP1061-20121228|5691_1  27 FSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEV---SCDWDPDIPVR-ERCGVLFQQTTLLDELTVAGNLAVALKLHEdifCTPVARDARIKQLLDTVGLNYGKDahKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHE 207
                 5667777788889999999999988888888888887777665554...57777666676.6899**********************998633356778999***********9665422889*************************************************************6 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   8.6e-20   5.9e-18     485     668 ..      24     214 ..      16     217 .. 0.92

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 8.6e-20
   TIGR03375 485 nvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdir...qidp.adlrrnigyvpqdvtLfyG.tlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkT.lvlvtHrtslLelv 668
                 +++++++pG+ v + G  G GK+t++ +l+g+ ep++   ll  ++++    +dp   +r++ g++ q++tL+   t+  N+a++ +  ed     +a+ a +++++++    + +  +   ++LSgG  + v la  l +  ++++LDEP + lD+ s e + ++L +l + +kT l+l++H  +l +lv
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvscDWDPdIPVRERCGVLFQQTTLLDElTVAGNLAVALKLHEDIFCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKtQKTaLLLISHEPHLSKLV 214
                 6899**********************************999999988733356773479************997549*******************************************************************************************999875554899*****999998 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   9.5e-20   6.5e-18     332     520 ..      20     214 ..       7     227 .. 0.87

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 9.5e-20
   TIGR01842 332 ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlk...qwdret.lGksiGYlPqdveLfeG.tvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkit.vvvithrpsllelv 520
                 +  + i+f+l++G+ + + Gpsg Gk+++a +l+G+ +p++    l   +l+    wd +  + ++ G l q+  L++  tva n+a   +  ++      a+ a + +l+  +   Y  +  +  ++LsgG   R+ La  l    +++vLDeP + LD+     +a+ l++l++ + t  ++i+h p+l +lv
  MMETSP1061-20121228|5691_1  20 PFGESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvscDWDPDIpVRERCGVLFQQTTLLDElTVAGNLAVALKLHEDIFCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTaLLLISHEPHLSKLV 214
                 556789**********************************9998888887764458**99647889*********99754*******888766666677789999999999999999999999***************************************************8866551678*****998876 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.0   1.2e-19   8.3e-18      17     186 ..      23     207 ..      17     214 .. 0.80

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 1.2e-19
   TIGR01189  17 eglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrd....e.laeellylgHldglKaeLsalEnLkfyaallq.......seqktveealekvgLs..gledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaell.aaHlargGivllathq 186
                 e+++f+l++G ++ ++Gp G GKtt+  +l+G+ +p++    l + +l+ + d      ++e++  l  + +l +eL+++ nL    +l++       + +  +++ l++vgL+  + ++ + ++Ls G  rR+ la  l +++++ +LDEP+t lD+ + e +a+ l +   ++  + ll +h+
  MMETSP1061-20121228|5691_1  23 ESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDwdpdIpVRERCGVLFQQTTLLDELTVAGNLAVALKLHEdifctpvARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELvRLRKTQKTALLLISHE 207
                 5799********************************998877776655544331112224678999999**************99999998888888655669**********933345677899********************************9998877665405555555566666665 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   2.3e-19   1.6e-17      20     202 ..      25     207 ..      22     217 .. 0.85

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 2.3e-19
   TIGR00972  20 vnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayglrlkg..ikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthn 202
                 ++++++  + + l GpsG Gk+t+   l  +++  ++  +  k+ le +   d     + +r++ G++fq+ +     ++  n+a++l+l++    +  + d+++++ L  ++l      +++k + +LsGG  +r+c+a  la +  v++lDeP   LD +++e +   +  L+k+    ++++ h+
  MMETSP1061-20121228|5691_1  25 IEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDWDP---DIPVRERCGVLFQQTTLLDeLTVAGNLAVALKLHEdiFCTPVARDARIKQLLDTVGLN--YGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTqkTALLLISHE 207
                 6777888889999********************998888888887765544444...6789*************9879************98544556677899*********97..567789********************************************999989987532556677776 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   2.3e-19   1.6e-17      48     226 ..      29     208 ..      23     220 .. 0.86

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 2.3e-19
   TIGR00955  48 aksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveake....mraisayvqqddlfiptltvrehLmfsahlrlkrrltkk..ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktvilti.HQP 226
                 +++G  + + G+SG GKtT+  +l+  +e   + s  + l  e    +     +r++++ + q+  ++  ltv  +L +   l+l++++  +   + +r++++l+++gL+  +d     p +   lSgG  +R+ la +l +   ++++DEP +GLD +sa  v + L +l +  kt++l i H P
  MMETSP1061-20121228|5691_1  29 LNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDWDpdipVRERCGVLFQQTTLLDELTVAGNLAVA--LKLHEDIFCTpvARDARIKQLLDTVGLNYGKDAHKL-PSE---LSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLIsHEP 208
                 789999*******************99998888765555554443222222239***********************986..777777655445*****************9998866.665...*****************************************************99986777 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   4.1e-19   2.8e-17      17     192 ..      26     208 ..      15     243 .. 0.87

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 4.1e-19
   TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlk.....raraeerriseekvielLgie..hLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsl 192
                 +++l+    + l G sG Gkt++  +++G+  p++    l    l+ s       p + r g+ Fq+ +L   l+v++nL   lk      +++  r+++ +++++ +g++  +  ++lp++LsGG   Rv ++  l  + +++++DeP + LD+ + + +   L rl++  k  +l++sH+ 
  MMETSP1061-20121228|5691_1  26 EFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDWDPDIPVRERCGVLFQQTTLLDELTVAGNLAVALKlhediFCTPVARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHEP 208
                 5666555788999*********************999999988888777655555667889*******************99987444446889999999999999877752267899***************************************************************86 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   5.2e-19   3.5e-17      22     191 ..      24     203 ..      19     226 .. 0.79

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 5.2e-19
   TIGR01288  22 dlsftiaagecfgllgpngagkstiarlvlglispdegk..itvlgepvpara...rlarakigvvpqfdnldreftvrenllvfgryfg...lstreieevipsllefarleskad..vrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktillt 191
                  + f++  g c  l gp g gk+tia ++ g+  p++    +  l+ +v +        r + gv+ q  +l  e+tv  nl v  +  +    +    ++ i +ll+   l+   d     ++lsggm rr+ la  l +  ++++ldep tgld  +   +   l  l    kt ll 
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDslLRKLQLEVSCDWdpdIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEdifCTPVARDARIKQLLDTVGLNYGKDahKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLL 203
                 6789*******************************9865114445555555431114589**********************99877654211233345789********9986554004569*********************************998887777777777777776653 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   1.6e-18   1.1e-16      26     207 ..      27     214 ..      22     308 .. 0.83

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 1.6e-18
   TIGR02314  26 lfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnae.lvkarrqigmifqhfnllssrtvfgnvalplelent...pkekikrkvtellalvglsdkkdsy..psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkri 207
                 + +  g  + + g sg gk+t+   +  + +p++ + ++   +l    + +  +  r + g++fq   ll   tv gn+a+ l+l++    +    + ++++ll  vgl+  kd++  ps+lsgg  +rv +a  la   +v++ de  + ld  +++ +   l  + ++ + ++lli+he ++ k +
  MMETSP1061-20121228|5691_1  27 FSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDWDpDIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDifcTPVARDARIKQLLDTVGLNYGKDAHklPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHEPHLSKLV 214
                 556668888889**********************9999999888766654424678899*************************987522122334679**********999998555***************************************************************9887765 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   2.4e-17   1.6e-15      19     182 ..      25     206 ..      21     216 .. 0.81
   2 ?   -0.1   0.1         2   1.3e+02     134     178 ..     285     328 ..     279     343 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 2.4e-17
   TIGR03740  19 vslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrk.....d...lkkiGsliesPalyenltarenlkvrtlllg.......lpesrieevlkivdle..ntekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqel.reliksfpekGitvilssh 182
                 ++++++  s   l Gp G Gk+t+  +ltG+ +++  + ll   ++  +     d    +  G+l ++ +l ++lt   nl v  +l++         ++ri+++l++v+l+  ++  k  +++s Gm +r+ +a+ l ++ ++++ldeP  Gld +  + + rel++  +++ ++++l sh
  MMETSP1061-20121228|5691_1  25 IEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVScdwdpDipvRERCGVLFQQTTLLDELTVAGNLAVALKLHEdifctpvARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVaRELVRLRKTQKTALLLISH 206
                 66777778888999*******************99887776655443221111121214789*******************9988765433332324689**********983356678899***********************************9998659***************999 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 2
   TIGR03740 134 GiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvi 178
                 G+ai++l    l  ld     ld + + e+r lik ++ +  + i
  MMETSP1061-20121228|5691_1 285 GLAISMLSADILQRLDISNKVLDLIDV-EVRPLIKLLTGQEASSI 328
                 899999999999999999999999998.79999999998876655 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0     1e-17   7.1e-16     302     487 ..      24     207 ..      22     216 .. 0.83

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 1e-17
   TIGR03269 302 nvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmt.kkgvlerGrakkyiGllhqeyalyphrtvlenlteaigle...lpdelakrkav.ivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshd 487
                 ++++ ++ +    l G sG Gktt++ +l G+ ep++ +  +r  +  v    ++ +     +++  G+l+q+ +l    tv +nl+ a+ l+   + + +a+   +   l +vG++  k     +klp+els G   rv la  l +  r+++ldep   +d ++   va+ +++ r+  + + +++sh+
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDwDPDI----PVRERCGVLFQQTTLLDELTVAGNLAVALKLHediFCTPVARDARIkQLLDTVGLNYGKDA---HKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHE 207
                 677777788888899*********************998877755544433213343....455568*******************999988644456677776656156899***977664...699**************************************************************8 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   9.4e-17   6.4e-15      19     186 ..      23     201 ..      21     216 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 9.4e-17
   TIGR03522  19 devsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavage..dv...lknslevrkniGylPehnPlyldlyvreylefsaalyk....lkgrklkkrveelielvGlk..aeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlvei.revikeiakdktvi 186
                 +++ f+ ++G+ v + GP G Gk+t+  +ltg  +++     + +   +v    +  + vr+  G l +   l  +l v   l+   +l++        +++ r+++l++ vGl+  +++hk  ++ls G  +rv la  l    +v++ldeP tGld      + re+++    +kt +
  MMETSP1061-20121228|5691_1  23 ESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLqlEVscdWDPDIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEdifcTP-VARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVaRELVRLRKTQKTAL 201
                 5799*****************************99987655544330133111345689********************988766555543222055.8899************744689**************************************8766544377777666677655 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   3.1e-16   2.1e-14     493     670 ..      20     206 ..      15     223 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 3.1e-16
   TIGR03796 493 pliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpre...eipre..vlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr.R...gctciivaH 670
                 p+ e +++sl+pG+ v l G+sG Gk tia +++G++ep++ + l+   ++e   +   +  v   +  l +q  +l e tv  nl++  +  ++   +  a+DA i++ + +   +y ++ ++  + lsGG   R+ +A  L+++  +++lDE  + LD+   + + ++l r R     + ++++H
  MMETSP1061-20121228|5691_1  20 PFGESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvscDWDPDipVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDIFCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRlRktqKTALLLISH 206
                 6668899*********************************999888887776322333331144556667888899999*********9998888888999************************************************************98888877653313111334566676 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   0.0   4.9e-16   3.3e-14     343     527 ..      16     206 ..       7     227 .. 0.86

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 4.9e-16
   TIGR02203 343 gddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdla...dlkLa.sLRrqvalvsqdvvLFdd.tiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkg.Rtt.lviah 527
                 g++++  +si++++++G  v l G+sG Gk+t++ +l+   ep++ + ll   +l+   d   +  +R++  +  q+ +L d+ t+a n+a + +   ++     ++++a +k+l+d++     ++  +  s+LsGG   R+ +a  l +   +++LDe  + LD+ s   v   L rl k  +t+ l+i+h
  MMETSP1061-20121228|5691_1  16 GAGAPFGESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvscDWDPDiPVRERCGVLFQQTTLLDElTVAGNLAVALK-LHEDIFCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTqKTAlLLISH 206
                 556666789*******************************************999843333333259***********9999879******9877.55666678999************9999999999**************************************************8751555346777 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   1.2e-15   7.9e-14     498     675 ..      23     209 ..      12     230 .. 0.87

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 1.2e-15
   TIGR00958 498 kdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplk...eydhky.lhrkva.lVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLs 675
                 + + f+l+pG+ v l GPsG+GK t+a++l  + +P   + ll   +l+   ++d    ++++ + l +q  +l + +v  N+a  l+  ed   t +a+ a +++ +  +  +y  +  +  s lsgG   r+ +A  L ++ rv++LDe    LD+     v + l + +++++ ++lli h  +
  MMETSP1061-20121228|5691_1  23 ESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvscDWDPDIpVRERCGvLFQQTTLLDELTVAGNLAVALKLHEDIFCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTvsaeGVARELVRLRKTQKTALLLISHEPH 209
                 5678***************************************9999964334444333666665156777788889*********************************************************************************8776677778889999999*****99654 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0     8e-06   0.00055      22      61 ..      20      59 ..      10      75 .. 0.83
   2 !   27.3   0.0     7e-09   4.8e-07     146     215 ..     144     214 ..     110     219 .. 0.85
   3 ?    0.7   0.0      0.93        64     126     150 ..     391     415 ..     381     421 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 8e-06
   TIGR02324 22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpe 61
                p  ++++++++ G +v l G+sG Gk t+  +l + + p+
  MMETSP1061-20121228|5691_1 20 PFGESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPS 59
                566899***********************98887776665 PP

  == domain 2    score: 27.3 bits;  conditional E-value: 7e-09
   TIGR02324 146 aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrk.vvvelikeakargaaligifhdeevrelv 215
                  P+  sGG  +Rv +a  l + + +++LdeP + Ld+   + v +el++  k++ +al+ i h+ ++ +lv
  MMETSP1061-20121228|5691_1 144 LPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEgVARELVRLRKTQKTALLLISHEPHLSKLV 214
                 4799********************************988772568******************98877665 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.93
   TIGR02324 126 rakakellarlniperLWslaPatf 150
                 +++ ++ll+ l +  r W+laP+  
  MMETSP1061-20121228|5691_1 391 ATNQNNLLRVLGVDPRWWTLAPSVL 415
                 4556789***************965 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.8   0.0   7.3e-15     5e-13      10     186 ..      24     207 ..      18     211 .. 0.81

  Alignments for each domain:
  == domain 1    score: 46.8 bits;  conditional E-value: 7.3e-15
   TIGR01166  10 glnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGe..eldysrkgllelrkkvalvlqdpddqlfaadvdedvafgpl...nlGlseaeverrvrealaavdis..gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGkt.vvisthd 186
                 +++++++ g+ + l G+ G Gk+t+ + l+G+  P +   ll     e+  +    + +r++ ++++q++   l   +v  ++a +++   ++  ++   ++r+++ l++v+++  + ++++ + lsgG  +rv +a  +a r +v++ldeP +gld+  ae +++ l +lr+  kt +++ +h+
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLqlEVSCDWDPDIPVRERCGVLFQQTT-LLDELTVAGNLAVALKlheDIFCTPVARDARIKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTaLLLISHE 207
                 689999*****************************88776666551255666778899**********974.3445566666655543112566677777899*******999732457899*************************************************98766525566675 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0082      0.56       2      31 ..      28      57 ..      27      67 .. 0.84
   2 !   37.8   0.0   5.1e-12   3.5e-10      94     172 ..     126     207 ..     114     239 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0082
   TIGR03771  2 svdkGellgllGpnGaGkttllrailglik 31
                s+++G  + l Gp G Gktt+   + g+ +
  MMETSP1061-20121228|5691_1 28 SLNPGSCVELRGPSGRGKTTIATVLTGMHE 57
                7899****************9887777655 PP

  == domain 2    score: 37.8 bits;  conditional E-value: 5.1e-12
   TIGR03771  94 vadalervklt..eladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeel.agegtailmtthd 172
                 +++ l++v l+  + a++   elsGG  +rv +a  la + ++++ldepftGld+ s e ++  +  l  +++ta+l+ +h+
  MMETSP1061-20121228|5691_1 126 IKQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLrKTQKTALLLISHE 207
                 556677777762234556668**************************************98766666615677889999996 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   6.6e-14   4.5e-12      19     200 ..      24     207 ..      20     218 .. 0.85
   2 ?   -0.5   0.0      0.99        68     446     480 ..     278     312 ..     268     324 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 6.6e-14
   TIGR02633  19 nidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkas...sirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtrpv.sdlGlGqqqlveiakalnkqvrllildepsasltekete.illdiirdlkakgvacvyishk 200
                 +i++ l++G +v l G  G Gk+t+  vl+g++   + d  +   + e+      +i   er G  ++ q+ tl+ el+v+ n+ +  ++  +       a   r k+ll  + l+  ++++ + s+l +G  + v +a  l ++ r+++ldep + l     e +  +++r  k++  a + ish 
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDwdpDIPVRERCG--VLFQQTTLLDELTVAGNLAVALKLHEDI-FCTPVARDARIKQLLDTVGLNYGKDAHKLpSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEgVARELVRLRKTQKTALLLISHE 207
                 68999****************************9888877666666666655222555566666..689***************9999987666.677778889************98888765389******************************977666615679*****************6 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.99
   TIGR02633 446 inqlaqeGvaiivvsselaevlGlsdrvlvigeGk 480
                 + ++++ G+ai ++s+++ + l +s++vl + + +
  MMETSP1061-20121228|5691_1 278 LMAFMACGLAISMLSADILQRLDISNKVLDLIDVE 312
                 4567788*********************9876655 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.0   4.9e-14   3.4e-12     357     533 ..      23     206 ..      12     225 .. 0.89

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 4.9e-14
   TIGR02204 357 dgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdl...reldpe.elrerlalvpqdsalfaa.svleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkg.rtt.lviah 533
                 + ++++++pG  v l GPsG Gk+t+ ++l   ++P++   ll  ++l   ++ dp+  +rer  +  q+++l+ +  v  n++       d   +  a+ a+ ++++ ++   y         +LsGG  +r+ +a  + + +++++Lde  + Ld+ s + v + l +l k  +t+ l+i+h
  MMETSP1061-20121228|5691_1  23 ESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLevsCDWDPDiPVRERCGVLFQQTTLLDElTVAGNLAVALKLHEDIFCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTqKTAlLLISH 206
                 5799***********************************999999887445688998459*****9999999886538999***9999989999999******************99999**********************************************999998751554356777 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   7.2e-14   4.9e-12     474     650 ..      23     206 ..       8     223 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 7.2e-14
   TIGR01846 474 snlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlala...dPaw.lrrqvgvvlqenvlfsr.sirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick..grtviiiah 650
                 + +++++++G  + + GpsG Gk+t++ +l  ++ P +   l+ +  l +    dP   +r + gv++q+  l++  +++ n+a+a    ++     +a+ a  ++++ ++   y ++     ++lsGG  +r+ la  l +  r+++lde  + ld  s + + r+l ++ k    +++ i+h
  MMETSP1061-20121228|5691_1  23 ESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVScdwDPDIpVRERCGVLFQQTTLLDElTVAGNLAVALKLHEDIFCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKtqKTALLLISH 206
                 5688999*************************************9999764334997548999*****99988875489*******99999999999********************************************************************9998875510445677777 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   1.3e-12   8.6e-11      20     198 ..      25     209 ..      15     240 .. 0.74

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 1.3e-12
   TIGR03873  20 vdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlka.......lsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvels..sladrdlstlsGGerqrvhlaralaqePklllldePtnhld.vsaqlellalvrelaaegvtvvvalhdln 198
                 ++ +  +G+   l GP G Gk+t+  +l+G+ +p++ +  l   +l+        ++ r+   r  ++ q+++   +l+v   +a+    h  +f++  + da + +++l +v+l+  + a++  s lsGG  +rv la  laq+ ++++ldeP   ld vsa     +lvr   +++++ ++  h+  
  MMETSP1061-20121228|5691_1  25 IEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVscdwdpdIPVRE---RCGVLFQQTTLLDELTVAGNLAVALKLHEDIFCTPVARDARI-KQLLDTVGLNygKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDtVSAEGVARELVRLRKTQKTALLLISHEPH 209
                 6777889***************************99888776666543111111133444...456777888888899999999999999*********999987.56888888762266888899********************************9455555555566655445555555556544 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   2.2e-12   1.5e-10     959    1111 ..      35     197 ..      11     215 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 2.2e-12
   TIGR01257  959 taflghngagktttlsiltgllpptsgtvlvggkdietnld.....avrqslgmcpqhnilfhhltvaehilfyaqlkgrswee...aqlemeamledtglhhkrnee..aqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgr 1111
                    + g  g gktt  ++ltg+  p+    l+   ++e + d      vr+  g+  q+  l+  ltva  + +  +l+   +      +  ++ +l+  gl + ++      +lsgg+ r++ +a+ +    +v+vldep +g+d  s   +   l++ r  +
  MMETSP1061-20121228|5691_1   35 VELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDwdpdiPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDIFCTpvaRDARIKQLLDTVGLNYGKDAHklPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQ 197 
                  5567889*****************************999884444449***********************9999999876543111356789999*****997765512589************************************99998888887643 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   4.1e-12   2.8e-10      18     191 ..      24     207 ..      20     224 .. 0.84

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 4.1e-12
   TIGR03410  18 dvslevekgevvavlGrngvGkttllkalvgllkvksGeielegedit...klkpeervkaGiayvpqGreifpkltveenlelglealkkk......ekkipeeiyelFPv.lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqv 191
                 +++++++ g++v + G  g Gktt+   l+g+++ ++    l+  +++   + +p   v++  +   q  +++ +ltv+ nl ++l+ +++       + + ++++++   +   +  ++   +LsGG    + +a  L+++ ++++LDeP  G+     + +++ + +l+k+++ a+ll+ + 
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvscDWDPDIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDIfctpvaRDARIKQLLDTVGLnYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHE 207
                 68899999**************************999988888777762235789999*****************************9998776644333333444444433134556778899*******************************************************99765 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   5.3e-12   3.6e-10     490     673 ..      22     212 ..      14     227 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 5.3e-12
   TIGR01193 490 ledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslk...didkh.elrqlinylPqePfifsG.silenlllgakenvsqee.ikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklk..dkt.iifvahrlsvak 673
                  e i+++++  + + l G sG Gk+t+a +l +++++++ + ll + +l+   d d    +r+    l q+  +++  ++  nl +  k   +++   + + + a ik+ ++ + l y  +  +  s++sgG  +r++la  l    +v++lde  + ld++  + +  +l++l+  +kt +++++h  +++k
  MMETSP1061-20121228|5691_1  22 GESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvscDWDPDiPVRERCGVLFQQTTLLDElTVAGNLAVALKL--HEDIfCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRktQKTaLLLISHEPHLSK 212
                 578999999999*********************************999975445554425899999999888877653788888776654..33330456778899*****************************************************************9995224553677888766665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.9   0.0     2e-11   1.4e-09     470     638 ..      23     197 ..      15     218 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.9 bits;  conditional E-value: 2e-11
   TIGR03797 470 ddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdle.kldvq...avRrqlGvVLQngrllsg.sileniaggasltlde.aweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR 638
                 +++ ++ +pG  v + G+SG GK t+  +L g  +P++   l    +le + d +    vR ++Gv +Q++ ll + ++  n+a + +l  d     +ar a +++ +++  +       +  + lSGG   R+ +A  l+++ r++++DE    LD  + + V   l +l+ t 
  MMETSP1061-20121228|5691_1  23 ESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEvSCDWDpdiPVRERCGVLFQQTTLLDElTVAGNLAVALKLHEDIfCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQ 197
                 5788999******************************9999998888874455542236***********9998763789999999999999724568999*********9999999999999*********************************************9999875 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.8e-10   1.9e-08      18     213 ..      24     217 ..      19     226 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 2.8e-10
   TIGR01978  18 glnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGei.klkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPd 213
                 +++ ++++G  + + Gp G Gk t+++vl+g ++ + ++  + kl+ +   + +++   r+   + fq+ + +  ++++  l  al+ +++   ++    ++    +k+ l+++ l+      +l +  sGG  +r  +   +  + ++++LDe   GlD  +   va+++ +lr++ ++all+i+h  +l +l++ +
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLrKLQLEVSCDWDPDIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDIFCTP----VARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTqKTALLLISHEPHLSKLVHGE 217
                 788999*************************88877766655245555556677766555555567999999***********9999999544444....45566799999999999999999**********99988766666788999**********99999999999999876599**********99988765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00034     0.023     339     375 ..      23      59 ..      20      66 .. 0.92
   2 !   18.6   0.0   1.8e-06   0.00012     434     479 ..     138     183 ..     125     213 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00034
   TIGR03719 339 ddlsfklpkggivGviGpnGaGkstlfklitgkekpd 375
                 + ++f+l +g+ v + Gp G Gk+t+  ++tg+++p 
  MMETSP1061-20121228|5691_1  23 ESIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPS 59 
                 6799****************************99986 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 1.8e-06
   TIGR03719 434 GadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetl 479
                 G+d +k  +elsGG   rv la  l +   v++ldeP   ld    
  MMETSP1061-20121228|5691_1 138 GKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSA 183
                 8899999999999999999999999999999999999999886544 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   4.1e-10   2.8e-08      14     186 ..      18     192 ..       5     215 .. 0.71

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 4.1e-10
   TIGR02323  14 gskkgcrvsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGki...raaakwlekveidaari...kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvr 186
                 g+  g +++f l pG  + + G sG Gk+t+ + l++   +++ +     r+ +le+ +  +++    +r   G++ q++  l   ++  +n++  l          +   ++ ++ l+ v ++ ++     p+++sGGm +r+ +a +l  r r++++ ep  Gl +v a  +  r+lvr
  MMETSP1061-20121228|5691_1  18 GAPFGESIEFsLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLL--RKLQLEVSCDWDPDIP--VRERCGVLFQQTTLLDE-LTVAGNLAVALKLHEDIFCTPVardARIKQLLDTVGLNYGKDahkLPSELSGGMGRRVCLALQLAQRKRVIVLdEPFTGLDTVSAEGV-ARELVR 192
                 55667789****************************988888877655..4445777776666655..78888***999886655.4444566655555544444433000444569999999987655569************************9999******77776543.344443 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   3.4e-10   2.3e-08     353     528 ..      24     206 ..      19     216 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 3.4e-10
   TIGR01192 353 dvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtr.e...slrksiatvfqdagllnr.sirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrtt..fiiah 528
                  + f    g  v + gp+g gktt+  +l  +++p++   l+  ++++     +    +r+    +fq++ ll+  ++  n+ +  +   d      a+ a  +++++    +y     +  ++lsgg  +r+ +a  + +   ++vlde  + ld  +   v   +  lrk + t  ++i+h
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLQLEVSCDwDpdiPVRERCGVLFQQTTLLDElTVAGNLAVALKLHEDIFCTPVARDARIKQLLDTVGLNYGKDAHKLPSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTalLLISH 206
                 57899999*******************************99999887654321222269**************86599*******9999999999999*********************************************************9766666666666666654441234555 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   4.4e-08     3e-06     802     895 ..     120     212 ..      69     231 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 4.4e-08
   TIGR00630 802 vpkisrklellvdvGLgYiklGqpat.tLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGnt.vvviehnldvik 895
                 v++ +r  +ll +vGL+Y k  ++ +  LsGG  +rv La +L +r+    + +lDeP tGL +   + + + l rl ++ +t +++i h  ++ k
  MMETSP1061-20121228|5691_1 120 VARDARIKQLLDTVGLNYGKDAHKLPsELSGGMGRRVCLALQLAQRK---RVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTaLLLISHEPHLSK 212
                 44444555667779999998877765269999999999999998875...5889999999999999999888888888776662567888766544 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.7e-06   0.00025     786     962 ..      29     208 ..      23     222 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.7e-06
   TIGR00956 786 vkPGkltALmGasGAGkttLlnvLaeRvttG....vitegd.rlvngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCti.HqP 962
                 ++PG+   L G sG Gktt+  vL++  +      ++ + +  ++   + d   + + G   qq   l++ tv   L  +  l +    +   ++  + ++++ ++l+  +dA      + L+    +r+ ++  L+ + k ++ lDeP  GLD+ +a  + + l +l ++ ++ l  i H P
  MMETSP1061-20121228|5691_1  29 LNPGSCVELRGPSGRGKTTIATVLTGMHEPShqdsLLRKLQlEVSCDWDPDIPVRERCGVLFQQTTLLDELTVAGNLAVALKLHEDIFCTPVARDARIKQLLDTVGLNYGKDAH--KLPSELSGGMGRRVCLALQLAQR-KRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLIsHEP 208
                 68*********************99876544011033322202333445566778899*********************99999999999******************999995..444569999999*******9766.58899****************9988888887776555443777 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.031       2.1    1223    1265 ..      10      52 ..       7      59 .. 0.87
   2 !   10.2   0.0   0.00027     0.018     445     613 ..      25     212 ..      19     225 .. 0.59

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.031
   TIGR01271 1223 ltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                  l a+ t ag    + + fs+++g  v l g +g gk+t+ + l
  MMETSP1061-20121228|5691_1   10 LRARPTGAGAPFGESIEFSLNPGSCVELRGPSGRGKTTIATVL 52  
                  66778899999999**********************9987665 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00027
   TIGR01271 445 islklekgqllavagstgsgkssllmmilgelepsegk.ikhsgrisfspqvswimpgtikdniifgls..ydeyryts.vikacqleediallae.kd...ktvlgeggi...........tlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehlkk 613
                 i++ l+ g  + + g +g gk+++  ++ g  eps+   +    ++  s +    +p   +  ++f  +   de      +  a +l edi   +  +d   k  l   g+            lsgg   r++la  + +   + +ld pf+ ld v+   +  + +    ++kt +l+ s+  hl k
  MMETSP1061-20121228|5691_1  25 IEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDsLLRKLQLEVSCDWDPDIPVRERCGVLFQQTtlLDELTVAGnLAVALKLHEDIFCTPVaRDariKQLLDTVGLnygkdahklpsELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHEPHLSK 212
                 66666666666666666666666666666666666432133444455555544455555555666654422466655441334556666664443211211112222222211111111122589999999999999999999999999999999999888877777666788999999998888876 PP

>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.4e-05    0.0057     428     506 ..     135     211 ..     125     222 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.4e-05
   TIGR00634 428 antGekvkpLakvASGGELSRvmLalkvvlsssaavttliFDEvDvGvsGktaqaiakkLaklsekkQ..vlvvTHlpqva 506
                  n+G++++ L    SGG   Rv Lal++          ++ DE  +G+    a  +a++L +l +++   +l + H p ++
  MMETSP1061-20121228|5691_1 135 LNYGKDAHKLPSELSGGMGRRVCLALQLAQR----KRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKtaLLLISHEPHLS 211
                 599***********************97544....569*************************776543399*****9886 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00034     0.023     359     531 ..      24     209 ..      11     227 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00034
   TIGR01194 359 pidlriasGelvyivGenGcGkstliklllGlyipqeGellldGe..avsdesrdd..yrdlfsavfadyylfddlvqpdekkqasldq....attylsrleledkvkvedlnystt.....tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddr 531
                  i++ ++ G  v + G  G Gk+t++ +l G++ p + + ll      vs +   d   r+    +f +  l+d+l    +   a   +     t   +   +++ ++  +lny        ++ls G  +r+ l     + + v++lde  +  d         el+   k +  ++l+ish+ +
  MMETSP1061-20121228|5691_1  24 SIEFSLNPGSCVELRGPSGRGKTTIATVLTGMHEPSHQDSLLRKLqlEVSCDWDPDipVRERCGVLFQQTTLLDELTVAGNLAVALKLHedifCTPVARDARIKQLLDTVGLNYGKDahklpSELSGGMGRRVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQKTALLLISHEPH 209
                 588899999**************************9999888754125777776663459999999999999999977544443332220111222233445666666777777643112225789999999888888888888999999999999888888888888777777777888888765 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.033       2.3     470     502 ..      23      55 ..       6      64 .. 0.90
   2 ?    4.4   0.0     0.031       2.1     582     644 ..     146     212 ..     121     218 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.033
   TIGR00954 470 eeLsfevksGnhlLiiGPnGcGKsslfRilgel 502
                 e+++f ++ G+ + + GP G+GK  +  +l+++
  MMETSP1061-20121228|5691_1  23 ESIEFSLNPGSCVELRGPSGRGKTTIATVLTGM 55 
                 6889*************************9987 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.031
   TIGR00954 582 dvLsgGekqRiamARlfyHkPkfavLDEc.t..sAvsvd.vEdklyelakevgitllsvshrksLwk 644
                  +LsgG   R+ +A  +  + + +vLDE  t    vs + v  +l +l k  + +ll +sh + L k
  MMETSP1061-20121228|5691_1 146 SELSGGMGRRVCLALQLAQRKRVIVLDEPfTglDTVSAEgVARELVRLRKTQKTALLLISHEPHLSK 212
                 57**************************7232256776657789999999************99977 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.5     1e+02      30      48 ..      34      52 ..      25      55 .. 0.83
   2 ?    9.0   0.0   0.00073      0.05    1213    1275 ..     155     213 ..     152     231 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.5
   TIGR00606 30 ltllvGPnGaGkttiieal 48
                +  l GP G Gktti  +l
  MMETSP1061-20121228|5691_1 34 CVELRGPSGRGKTTIATVL 52
                55689*********98766 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00073
   TIGR00606 1213 rlalaevfclnCgiialdePttnldrekieslaialveiiksrsrqrdlqllvithdedlvel 1275
                  r+ la  ++    +i ldeP t ld    e++a  lv + k +    +  ll+i h+ +l +l
  MMETSP1061-20121228|5691_1  155 RVCLALQLAQRKRVIVLDEPFTGLDTVSAEGVARELVRLRKTQ----KTALLLISHEPHLSKL 213 
                  7788888888899********************9998764443....3457777777666554 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0012     0.085      18      42 ..      29      53 ..      23      58 .. 0.87
   2 ?   -2.4   0.0       8.3   5.7e+02     179     225 ..     287     332 ..     280     348 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0012
   TIGR02640 18 lksgypvhlrGPaGtGktslalhva 42
                l+ g  v lrGP+G Gkt++a  ++
  MMETSP1061-20121228|5691_1 29 LNPGSCVELRGPSGRGKTTIATVLT 53
                788999***************8765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 8.3
   TIGR02640 179 tisvdykdeetetaivraktdvaeesaaaivrlvrelraegdektsg 225
                 +is+   d+ + ++i ++  d  + +++ +++l+    a+   +  g
  MMETSP1061-20121228|5691_1 287 AISMLSADILQRLDISNKVLDLIDVEVRPLIKLLTGQEASSI-QMMG 332
                 688888999999999999999999999999999987775443.3344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        83  (0.020234); expected 4.1 (0.001)
Passed Fwd filter:                        60  (0.014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              60  [number of targets reported over threshold]
# CPU time: 0.89u 0.17s 00:00:01.06 Elapsed: 00:00:00.53
# Mc/sec: 1506.67
//
Query:       MMETSP1061-20121228|5698_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   14.6   0.0     0.0032   14.6   0.0    1.0  1  TIGR00903 2A0129: major facilitator 4 family protein


Domain annotation for each model (and alignments):
>> TIGR00903  2A0129: major facilitator 4 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.8e-07    0.0032       4      65 ..       4      65 ..       1      79 [. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.8e-07
   TIGR00903  4 qavwvtyspvlslvaeeldvskeelgllavvypiafliltipsgllldrdfkrwllvgvllt 65
                ++v v  + vl+  a  l+ ++  l   a   p ++l+ t p g++l+rd+ r++   +++t
  MMETSP1061-20121228|5698_1  4 KTVLVVVTAVLCTFAAVLNHTRPRLFRKAHSAPPFYLATTYPNGMVLERDLPRFFRQYSIAT 65
                5678888889999999999999999999999************************9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 547.75
//
Query:       MMETSP1061-20121228|5699_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.37
# Mc/sec: 510.12
//
Query:       MMETSP1061-20121228|5690_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-29  100.0   0.2    2.1e-29   99.6   0.1    1.2  1  TIGR03636 L23_arch: archaeal ribosomal protein L23


Domain annotation for each model (and alignments):
>> TIGR03636  L23_arch: archaeal ribosomal protein L23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.1   5.1e-33   2.1e-29       1      77 []      63     139 .]      63     139 .] 0.98

  Alignments for each domain:
  == domain 1    score: 99.6 bits;  conditional E-value: 5.1e-33
   TIGR03636   1 plvtEKalkliekenkltfiVdrkatKkdikeaveklfdvkVekvntlitpkgeKkAyvkLkeekkAeeiasrlGvl 77 
                 pl+tE ++klie+ n+l fiVd ka+K++ik av +l++++ ekvntlitp+g Kk yv+L+++++A ++a+r+Gv+
  MMETSP1061-20121228|5690_1  63 PLTTESSMKLIEDSNTLVFIVDIKANKRQIKAAVRELYNIECEKVNTLITPRGLKKSYVRLSKDYDALDVANRVGVI 139
                 789************************************************************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 917.32
//
Query:       MMETSP1061-20121228|5702_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 607.15
//
Query:       MMETSP1061-20121228|5700_1  [L=845]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    4.6  22.3        2.9    4.4   4.2    2.3  2  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   8.8    0.0027        11      69     273 ..     482     707 ..     448     715 .. 0.66
   2 ?    4.4   4.2   0.00071       2.9     242     277 ..     713     748 ..     693     763 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0027
   TIGR01932  69 iqtvDgeadrivtkekkdli..vdtyikWrieDfkkyYlatgggnisaAevlikrkiedrlRseigklelkeivrssrd......eqldtleakealeaeakkn....kiaieiekgreilkkeilqiaesdlkdlGievvDvrikkikl.sdelsesiynRmrs......Er.....eaiArkyRsqGeekaeelrakaekEvvkiLseAereariikgegdaeaAkl 273
                   ++D+++d +v + k  +   v + + + i D  k  ++++    ++ e l+ +    +l ++i  + l++i +s +       + ++ +++    + e++ +    ++a+++    +  ++ +++ +e+ +   G+ + ++r++  k+ ++el + i +   +      E      +++   ++ q  ++ e+++a ae   +++L +A+++ +i  ++++aea kl
  MMETSP1061-20121228|5700_1 482 EHQLDDDSDLLVCETKDLVKvgVRADVFYSIVDPDKCIQTLN---TEELEDLVRETAVATLTNIIRSTALNQIAQSRQIsaapseSTIQATNVTAVDDDETRDGtdidQQATTVYFFDRAHDEFMTKLHEDFVTRYGVDIANIRMESFKImDNELANEIAQNCLTtahvenELsnlqgQNLIAVQKEQTAADCEKIKAMAEAKSRETLDNASNSRKIQAAKAEAEALKL 707
                 567888888888755555441156777889999999988887...5555666666666667777777777666655544555655555444444333333332232225666666667788888999999****************99852667888776554330111003211111233445566667777888888888888888888888888888888888776 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.00071
   TIGR01932 242 akaekEvvkiLseAereariikgegdaeaAklysda 277
                 a+ae + + + ++Ae+ea ++k+ ++ae Akl s++
  MMETSP1061-20121228|5700_1 713 AQAEADAILLKAKAEAEAIRLKASAEAERAKLLSQT 748
                 44555555555677777778899999******9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 3379.72
//
Query:       MMETSP1061-20121228|5703_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 568.13
//
Query:       MMETSP1061-20121228|5706_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|5704_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.26
# Mc/sec: 2426.57
//
Query:       MMETSP1061-20121228|5705_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|5709_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   12.0   0.2      0.035   11.8   0.2    1.1  1  TIGR03656 IsdC: heme uptake protein IsdC
        1.8    6.8   7.2       0.98    7.6   3.8    1.4  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03656  IsdC: heme uptake protein IsdC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.2   1.7e-05     0.035     156     208 ..      59     111 ..      40     121 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.7e-05
   TIGR03656 156 ekskeekdkvenktttkesksessnkekvdnPktgdetrivlyaivllialal 208
                     + + +   +++  es+se+ nk+ ++  + + +++++ +a ++  a a+
  MMETSP1061-20121228|5709_1  59 ASASDATIHRAMDESESESQSENENKDPTTEQQGSSGSTAFAFATAFATAFAF 111
                 222222333446788999999999*********************99988876 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.8   0.00048      0.98      58     100 ..      53      95 ..      45     100 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00048
   TIGR03685  58 aaapvaaaaaaaaaaeaaeeekeeeeeeeeekeeeeeealegL 100
                 a a ++a+a+ a+ ++a +e++ e + e+e+k+ + e+++++ 
  MMETSP1061-20121228|5709_1  53 ASASASASASDATIHRAMDESESESQSENENKDPTTEQQGSSG 95 
                 2333333333344444555555555677777777777666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 905.07
//
Query:       MMETSP1061-20121228|5708_1  [L=731]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-06   24.6   4.6      5e-06   23.6   3.2    1.4  1  TIGR00814 stp: serine transporter
    1.3e-05   22.5   8.4    2.3e-05   21.7   5.3    1.7  2  TIGR00837 araaP: aromatic amino acid transport protein
  ------ inclusion threshold ------
      0.051    9.7   3.4      0.082    9.0   2.4    1.2  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR00814  stp: serine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   3.2   3.7e-09     5e-06      12     167 ..      70     223 ..      62     315 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.7e-09
   TIGR00814  12 lfGtAiGAGvlflPiqaGlkGlwvlllmaiiaypltylahralakfvlsskesaeditevveeyfGkkaGilitllYFlaivpilliYsvaitntvesflkk.qlvlaallrallslvlilvlvaivlfgekllvkimsvlvfplvlillllslyli 167
                 l+   +GAG++ lP  +   Gl++ ++ +i+   lt    r+l+++   s+     + +  e  +Gk    ++t+  F++ +  +l Y + +  +++s+l   +  + ++  +l+++  +++l + ++++   l k +++ v  + li++l+ +yl 
  MMETSP1061-20121228|5708_1  70 LINAIVGAGIVGLPFAIQESGLVPGIVLTILCALLTEKSLRLLIETAKHSDV--PSYETLAEAAYGKFGFLFVTVSMFVMAYGAMLTYLMIVKDSFSSLLGVaKDDVSTRAGVLITVSSLVILPLSCQRDMADLAKTSKMNVC-FDLIMVLIVVYLA 223
                 667789******************************9999999999999998..6788899999***99999****************9999999999986414455555568888888888888888888888887776553.3333344444443 PP

>> TIGR00837  araaP: aromatic amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   5.3   1.7e-08   2.3e-05       8     134 ..      72     193 ..      67     238 .. 0.70
   2 ?   -1.6   0.1       0.2   2.7e+02      49     116 ..     231     299 ..     203     316 .. 0.60

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.7e-08
   TIGR00837   8 gtviGaGmlalPvstagawfivsllllillwllmllsgllllEvlltyeagaslatlakdllGkkgniiaglsllfvlyiLlyAYisaggsilselleeasgialsaraivllftvllaslvvlstk 134
                  +++GaG+++lP +  + + +++++l il +ll   s  ll+E  ++ ++  s++tla+   Gk g +++++s+ ++ y  +  Y+    +  s+ll  a +  +s+ra    + + ++slv+l  +
  MMETSP1061-20121228|5708_1  72 NAIVGAGIVGLPFAIQESGLVPGIVLTILCALLTEKSLRLLIETAKHSDV-PSYETLAEAAYGKFGFLFVTVSMFVMAYGAMLTYLMIVKDSFSSLLGVAKD-DVSTRAG---VLITVSSLVILPLS 193
                 679***********************9999999999999999*9999887.68**************************99999997555555555544443.3333333...33334444433333 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.2
   TIGR00837  49 lEvlltyeagaslatlakdllGkkgniiaglsllfvlyiLlyAYisaggs.ilselleeasgialsara 116
                    +  +  ++   ++ ++ +  ++  i + ++ + l +L  A++++ ++ i++ +le+ ++  +s+ +
  MMETSP1061-20121228|5708_1 231 RRHYESVLGDVDTFEVDEEPIYDSIWRIRWDTIFVGLGVLSFAFVCQHSAfIIAGSLENPTKQRWSRVT 299
                 444444445666666666666666666777777777888999999876653666666666666666554 PP

>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   2.4     6e-05     0.082     163     300 ..      96     235 ..      86     239 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 6e-05
   TIGR04154 163 vlalllalkvaeeekls..kerdldalkkplayavlaGialalylltwppavlfvlivgvfvlvqlvldllrgkspeylaivgavallvaavlvlpfiekslelsltsysllqvlallgvalglvllallarlverkdld 300
                 vl++l al + ++ +l   +++++d    +++  ++ G + +l + + +  + +  +++  ++v+ +++ l g  ++ +++ + v ++v+++++lp++ ++   +l+++s ++v + l+++l++v la+ ++++ r++++
  MMETSP1061-20121228|5708_1  96 VLTILCALLTEKSLRLLieTAKHSDVPSYETLAEAAYGKFGFLFVTVSMFVMAYGAMLTYLMIVKDSFSSLLGVAKDDVSTRAGVLITVSSLVILPLSCQRDMADLAKTSKMNVCFDLIMVLIVVYLAFHNTAAARRHYE 235
                 56666666666665555545555555556666666777666666555555555556666667889999999*****************************9****************************99988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (731 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 2837.77
//
Query:       MMETSP1061-20121228|5711_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|5714_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0069   13.5   0.1     0.0091   13.1   0.0    1.1  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
  ------ inclusion threshold ------
      0.023   11.2   0.1      0.025   11.0   0.0    1.1  1  TIGR01270 Trp_5_monoox: tryptophan 5-monooxygenase


Domain annotation for each model (and alignments):
>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   4.4e-06    0.0091      86     168 ..      19     102 ..       4     113 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.4e-06
   TIGR02154  86 geeedrvrgletGaddyvvk.Pfspkellarikavlrrirpeasdevlevedleldevahrvkasdkelelgptefrlleflme 168
                  e +d++   +   d y++k P s+++ +  i   l+r+r  +++ + ++   e+ + +   + + +++ l+p +++l++ + +
  MMETSP1061-20121228|5714_1  19 RERDDHICHENCYDDTYIMKrPSSVTDTVIDITQSLKRTRRPKVQWSNRIRVWEIRHLNDMSESEREKVWLTPVDYKLIKNMAK 102
                 34555665555556669997699****************99999888788878888888888899999**********997655 PP

>> TIGR01270  Trp_5_monoox: tryptophan 5-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.2e-05     0.025      92     171 ..      48     131 ..      10     143 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.2e-05
   TIGR01270  92 lellks..evdvlevtsvdrltlakeksleagsdtatekvewfp...kkisdldkvanrvlmyGseldadhpGfkdkeyrkrrkm 171
                 +++ +s   +   +v+ ++r  + + ++l+  s+++ ekv   p   k i+++ k++   +m G+++dad p f  +   +r + 
  MMETSP1061-20121228|5714_1  48 IDITQSlkRTRRPKVQWSNRIRVWEIRHLNDMSESEREKVWLTPvdyKLIKNMAKATV-FMMSGENIDADNPDFCTRGLEHRTRA 131
                 4444442234455788888999999999999999999998777733344555555444.6899***********88766666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.41
# Mc/sec: 582.68
//
Query:       MMETSP1061-20121228|5712_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-26   89.8   0.2    4.9e-26   89.3   0.2    1.2  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.3   0.2   1.2e-29   4.9e-26      31     376 ..      90     436 ..      75     480 .. 0.79

  Alignments for each domain:
  == domain 1    score: 89.3 bits;  conditional E-value: 1.2e-29
   TIGR00860  31 evekklldellkn.YdarvRPvafggkpvtVsinlilasiskvdeknmdytvniwlrqeWtDerLqyneee.......skgvtkvrledesiWvPDillanekdarfheitkknvlvrisknGevlysirltltlaCpmd.lknfPlDvQnCslkleSygY.ttddiklelkeqeavqvdeslfielpefellgvlktrseteetstgeYselklslvlrRrilYYllqlyiPsillvilslvsFwlnkdasgarvsLgittlLtlttfssgvreslPavsyvkaIdvylvvclvfvflalleyalVnyvvhkksakkkrklllerlarllkkkeegeekrr.paleakelsslelr 376
                 e e+++ d l++  Y+  v P  +g +p++V + l+ + ++++d  +   t+ ++l  eW D rL+++ e+        +     ++e+  +W P   l n  ++  +  t  ++ v +  +G+v +++   lt+ C  + l n P+D   C+l ++S    +   i++el   e v+v     +   e++++ +l+++ e   ++  +     +++ ++R   +Y+ +++iP ++l+ ls+  F+l+   +g+r ++ +++ L +  + ++ ++ lP       ++ +++  +  v   ++  ++V ++++ ++++++rk + ++++  +++ +  ++ ++ + ++++e+  ++  
  MMETSP1061-20121228|5712_1  90 ECETNIHDLLFGLdYNSAVPPITDGDNPLKVFVFLQYETVQSIDVGEGTATLFVTLVLEWVDPRLKWEVEDydtcsnrINVFAGHEIEQTTVWFPEFDLINVIEGVQNMPTR-KASVFS--DGTVRFQVIGRLTAFCAFSgLANIPFDILGCQLLIGSTIReDSPKIEYELAFPESVHVGGFE-VVYNEWKVIPELAEKGE--VFNGSS---FYFNFYFQRAKAHYVNNILIPTMILTYLSFFTFFLDLR-VGERLGFAMALALVVVAQQIITSDMLPVSDERLWLGTFVAYSFYWVLYCVIQSIVVGFLFYIREDRQERKAKSQHSEMIEQEADAVKREEKmTLTKHEENGVVAFV 436
                 44555556566536*****************************************************999966664333333345666699**********98876655555.777777..*****************977*****************7651556789999888888766544.67889999885655555..345544...4689999*******************************.***************************8889999**********************98887766666655555444444444433333322033344443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1942.13
//
Query:       MMETSP1061-20121228|5710_1  [L=1366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-28   95.8  35.3      1e-18   65.1   9.7    2.1  2  TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family
    6.9e-10   36.4   9.6    6.9e-10   36.4   6.6    2.2  2  TIGR00935 2a45: arsenical pump membrane protein
      0.002   14.2   0.1      0.003   13.6   0.0    1.2  1  TIGR01693 UTase_glnD: protein-P-II uridylyltransferase


Domain annotation for each model (and alignments):
>> TIGR00785  dass: transporter, divalent anion:Na+ symporter (DASS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   9.2   3.8e-13   5.2e-10      15     213 ..     155     339 ..     142     347 .. 0.86
   2 !   65.1   9.7   7.4e-22     1e-18     258     438 ..    1141    1320 ..    1110    1326 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 3.8e-13
   TIGR00785  15 aifvlaivllileplplavvaLlailiiavllgvlsavkvknalsgfadptifLvfgaFilakalektgLgkriAyklvkllgkttlelgyvlvflellLasawpsntaRaggillPiiksllallgskeekskrkigkylllgiavsasigsigfligsapNalaasllskil.gieisfldWllaalPlgiillllvp 213
                  ++ l+ v li++ + +  v +++ l + +++++++   +++ l gfa++ +  v++ F+ a +++ktg       kl+++  +  +  +   +++ ++++sa + nt    ++++Pi+++  + +g++         + ll   ++++ +g+  +lig+  N+++a+ll+k+   i+++ +d  ++++P+ +i ++ v 
  MMETSP1061-20121228|5710_1 155 IVLFLMFVALISDRIGADSVMMAS-LTLFMAANIIT---IQEGLEGFANEGLLTVLVLFVVADGISKTGALDWYMSKLLGRPNT--VASAQSRLMIPIAIISAFLNNTP-VVAVMIPIVQKWSKNIGKSA--------QQLLVPLSFASILGGTCTLIGTSTNLVVAGLLEKQYpEIKMGLFDLSIYGVPIAMIGIVYVL 339
                 35667899************9995.77888899999...9****************************9766777788888777..8999999****************.*********99977776555........789*****************************9875389*************7666554433 PP

  == domain 2    score: 65.1 bits;  conditional E-value: 7.4e-22
   TIGR00785  258 alllwifgksegikasvvallavvlllllgivtwkdikknkvaWnvlvlfgglitlagvLkksGfikwlseklvkil..eglsptivvlllvvlfvlllyefaSntAltallvpifvsvasvl..gvplellalalalsaslagillpvatppnaivYgsGyvkikdmwkvGlilgivslivlll 438 
                  +++        g    v al+a +l+++lgi++++++    v+W+v+v ++++ +++++L +sG++  ++  lv+i    g      ++  v l ++l+++++ n A++al++pi++ +a+ +  +v l+  +++l++sas++    p++  +n ++Yg G  k +d++ +G ++++v   + + 
  MMETSP1061-20121228|5710_1 1141 TVAMLAVYTAGGASLLVCALVASILMIALGILSEQEARDA-VNWEVFVTIAAAFGIGTALVNSGVAGGVASFLVTIGtsVGTG-SSGLFAAVYLATFLISNIVTNNAAAALIFPIAMDAAEQTdtDVILMSYCVMLGASASFM---SPFGYTTNLMIYGPGGYKYNDFLVIGTPMQVVLWFLSVG 1320
                  333333333456677899*********************9.******************************999998433444.55688899999**************************7734555556666666666666...9*****************************998776654 PP

>> TIGR00935  2a45: arsenical pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   6.6   5.1e-13   6.9e-10     235     413 ..     155     335 ..     137     345 .. 0.76
   2 !    5.0   6.7    0.0018       2.4       6     386 ..    1137    1292 ..    1110    1329 .. 0.49

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 5.1e-13
   TIGR00935 235 lvlffvlevleipvsalaaiaalil.iilakkadiidtekvlkrveWqivlFslalylvveaLknlgliey.lgeilnvledkrllaaillvgfvsAllsslvdniP.tvlvvalslsqssavgllkealvyAlvlGadLGpkitliGslAtllwlhvleqkgvkisfley..FrvGiil.tipv 413
                 +vlf  l ++ ++   ++a  ++++ ++l   a+ii +++ l++   + +l  l l++v  ++ + g  ++ ++++l++++   + +a   ++   A++s++++n P + +++ +  + s+++g  ++ l+  l + + LG+  tliG++ +l+ +++le++  +i  + +     G+++ +i+ 
  MMETSP1061-20121228|5710_1 155 IVLF--LMFVALISDRIGADSVMMAsLTLFMAANIITIQEGLEGFANEGLLTVLVLFVVADGISKTGALDWyMSKLLGRPNT--VASAQSRLMIPIAIISAFLNNTPvVAVMIPIVQKWSKNIGKSAQQLLVPLSFASILGGTCTLIGTSTNLVVAGLLEKQYPEIKMGLFdlSIYGVPIaMIGI 335
                 3333..34667777777776655442889999**********************************9888537889988865..5555555555679**********43355556666788999999*********************************9988877665511234554423333 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0018
   TIGR00935    6 ailvlvlvlviweikgltlaasaaigaalailagvvsrpdlatvveivwealalliaviilslildEtGfFeyaAvkvyklsn..grv.rklivllvLlgAvvsallandgaaLlltPvviallevlglnkktilafvviagfiadaaslvlivsnlviivsadlfglgFaeytsvmligvilvlvatlllLrllfrkdlpkvyalerlkkkkkaikdkallkkclivLvlllvlffvlevleipvsalaaiaaliliilakkadiidtekvlkrveWqivlFslalylvveaLknlglieylgeilnvledkrllaaillvgfvsAllsslvdniPtvlvvalslsqssavgllkealvyAlvlGadLGpkitliGslAtllw 386 
                  a+l+ v +l ++   g +l + a+++  l i  g+ s  +    v  +we  +++ a   +   l ++G+   +A  ++ ++   g +   l++ + L + ++s ++ n++aa l+ P+                                                                                                                                                                                                                                 ++++ ++++     + y  +lGa     + + G   +l+ 
  MMETSP1061-20121228|5710_1 1137 ALLLTVAMLAVYTAGGASLLVCALVASILMIALGILSEQEARDAV--NWEVFVTIAAAFGIGTALVNSGVAGGVASFLVTIGTsvGTGsSGLFAAVYLATFLISNIVTNNAAAALIFPI---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMDAAEQTDTDVILMSYCVMLGASA-SFMSPFGYTTNLMI 1292
                  444444445555555555555555444455555554444444333..344444444444444444444444444444333332112221235555555555555555555555555554.................................................................................................................................................................................................................................4444444444444455555555542.23344444444433 PP

>> TIGR01693  UTase_glnD: protein-P-II uridylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.2e-06     0.003     745     819 ..     569     640 ..     479     654 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.2e-06
   TIGR01693 745 k.dlatekarkakkrklqafavapevtilntaskkatvlEvraldrpGLLaavakileelglsiqsakittlGeka 819
                 + ++ +  +r++ +++ q+ a     ++  t  + ++v+ v a+drpGLL  ++k l  l+l ++    + +G + 
  MMETSP1061-20121228|5710_1 569 EdKYLHRDIRERGRKNTQHGAH----KVVVTSEHGFVVVGVDAQDRPGLLLDISKGLLRLNLTLRHSEASVVGTRS 640
                 2134444455555555555443....4444566789*****************************99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.59u 0.14s 00:00:00.73 Elapsed: 00:00:00.62
# Mc/sec: 2908.02
//
Query:       MMETSP1061-20121228|5721_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.087    9.1   6.5      0.097    8.9   4.5    1.1  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   4.5   2.4e-05     0.097     304     374 ..      22      89 ..       4     120 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 2.4e-05
   TIGR03185 304 svkaqlrkeeqakqnqliqevleerdkellelLpklalpaelvkelaaelaelakkaktdleiplllsdse 374
                 + ++q++++ q +q+ql qe+l+++  + l  Lp+ a p +++ ela+  a++    +t +++++ +s  +
  MMETSP1061-20121228|5721_1  22 HFQQQMQHQVQMQQQQLQQEQLQQQPTTSLVPLPE-AQPTQHLPELATATATVTT--NTTTNTIIAMSSAA 89 
                 46899999999**********************99.9**************9998..45566665555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       777  (0.18942); expected 82.0 (0.02)
Passed bias filter:                      320  (0.0780107); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 570.66
//
Query:       MMETSP1061-20121228|5718_1  [L=810]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   47.5   1.3    1.3e-12   44.3   0.0    2.0  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.1e-06   26.1   0.3    2.2e-06   25.1   0.2    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
      2e-05   21.3   0.4      3e-05   20.7   0.2    1.2  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0031   15.1   1.6      0.029   11.9   1.1    2.5  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
      0.006   13.0   0.2     0.0098   12.3   0.1    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.8   0.3    0.0099       8.1    1187    1256 ..      17      87 ..      14     100 .. 0.73
   2 !   44.3   0.0   1.5e-15   1.3e-12      77     163 ..     264     340 ..     248     347 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.0099
   TIGR03903 1187 daergryaaalarldeclalakslderyYlaeLllkkarclraager..avaaeallrravevareagkkri 1256
                  ++++g+ ++a+      +++a ++de  Y+ +L  + a + + ++      +ae + r + e+   ++++r+
  MMETSP1061-20121228|5718_1   17 EFQQGNLDNAIFFYTSAIDIAAKTDEAAYIVNLCNRSACYFQMEDLAmaRADAESAWRTSNETNV-KSAYRL 87  
                  7899****************************999999999888765434456666655544432.233333 PP

  == domain 2    score: 44.3 bits;  conditional E-value: 1.5e-15
   TIGR03903  77 paaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRg 163
                 p  +  r m+q +Dal + h +G+vhRDLkP+n+++   d+++h  v+DFG +      +d  e+ l    e++G+P + aPe + g
  MMETSP1061-20121228|5718_1 264 PGSQVKRWMMQLVDALEHLHVHGIVHRDLKPENVLL---DKHNHVIVIDFGTA------KDLIETDL-NGPEFVGTPDFMAPEAVTG 340
                 44567799**************************98...7889********75......45444444.678************8766 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   2.7e-09   2.2e-06      92     138 ..     268     315 ..     185     323 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2.7e-09
   TIGR03724  92 elellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                  ++ + ++ +++ +lH +givh Dl ++N+++ k++++++iDfG +k 
  MMETSP1061-20121228|5718_1 268 VKRWMMQLVDALEHLHVHGIVHRDLKPENVLLdKHNHVIVIDFGTAKD 315
                 4467778889999*******************55788999****9875 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.2   3.6e-08     3e-05     129     218 ..       9     105 ..       6     147 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 3.6e-08
   TIGR00990 129 klkekGnkayrnkdfdkaielyskalll..kedPvyy....snraacynaladlekvvedttaaleldpd.yvkalnrranaydqlgkyadalldlt 218
                  l++kGn+ +++ + d+ai +y+ a+ +  k d   y    +nr+acy  + dl    +d+  a +  ++  vk   r a++   +  + + +  l 
  MMETSP1061-20121228|5718_1   9 DLRQKGNHEFQQGNLDNAIFFYTSAIDIaaKTDEAAYivnlCNRSACYFQMEDLAMARADAESAWRTSNEtNVKSAYRLAKTMIAMKEFDEVVKVLR 105
                 5899********************986433888755444459**************99999999988776358888888887777777776665555 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   1.1   3.5e-05     0.029      64     124 ..      19      84 ..      14      97 .. 0.81
   2 ?   -0.1   0.0      0.18   1.5e+02      89     120 ..      84     115 ..      79     130 .. 0.75
   3 ?   -1.1   0.0      0.37   3.1e+02      29      53 ..     546     570 ..     534     576 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.5e-05
   TIGR02552  64 alkeyeeAiaaYalaaaldlddprpvy.....haaecllalgekeeAlkaLklaieiaeekeeyse 124
                 ++++ ++Ai +Y+ a  + +++ ++ y      ++ c++++++ ++A+++ + a+++++e +  s+
  MMETSP1061-20121228|5718_1  19 QQGNLDNAIFFYTSAIDIAAKTDEAAYivnlcNRSACYFQMEDLAMARADAESAWRTSNETNVKSA 84 
                 68999**************99988887444445799*********************998764444 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.18
   TIGR02552  89 vyhaaecllalgekeeAlkaLklaieiaeeke 120
                  y++a+ ++a++e  e  k L++a+ei + ke
  MMETSP1061-20121228|5718_1  84 AYRLAKTMIAMKEFDEVVKVLRIALEIPDLKE 115
                 68888999999999999999999998877444 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.37
   TIGR02552  29 yqqgkyeeAeklFqlLaaldpteak 53 
                 y + k++ A++ F  L++++ +e+k
  MMETSP1061-20121228|5718_1 546 YIRAKVRPASRDFVGLTQMNDNEYK 570
                 66789999************99886 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   1.2e-05    0.0098     262     304 ..     273     314 ..     255     321 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.2e-05
   TIGR01982 262 enlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivg 304
                  +lv   l++   +g+ H Dl p N+l++k++++i++DfG   
  MMETSP1061-20121228|5718_1 273 MQLVDA-LEHLHVHGIVHRDLKPENVLLDKHNHVIVIDFGTAK 314
                 555543.5778889**************************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 3239.73
//
Query:       MMETSP1061-20121228|5725_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|5726_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|5719_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-86  288.8   0.1    3.2e-86  288.0   0.1    1.3  1  TIGR02053 MerA: mercuric reductase
    3.2e-81  271.2   0.1    1.2e-80  269.3   0.1    1.7  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      2e-49  166.8   0.1    2.8e-49  166.4   0.1    1.1  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    2.2e-48  162.8   0.9    1.2e-47  160.3   0.6    1.9  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    4.4e-39  132.5   0.2    1.2e-38  131.0   0.2    1.6  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    1.5e-38  130.7   0.1    6.5e-38  128.6   0.1    1.8  1  TIGR03452 mycothione_red: mycothione reductase
    2.3e-24   83.6   0.2    3.4e-24   83.0   0.2    1.2  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    2.3e-19   67.3   0.0    4.3e-17   59.8   0.0    3.1  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    2.9e-15   53.7   0.6    4.4e-09   33.4   0.1    3.1  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    3.8e-11   40.1   0.3      2e-07   27.8   0.0    2.4  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    6.3e-11   39.2   0.1    1.4e-10   38.1   0.0    1.6  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    1.9e-10   37.9   0.1    7.7e-08   29.4   0.0    2.3  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    2.6e-09   34.0   2.1    1.3e-05   21.8   0.6    2.7  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    6.2e-09   33.8   0.1    0.00026   18.6   0.0    2.4  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    8.8e-09   32.8   0.1    3.4e-07   27.6   0.0    2.3  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    1.8e-07   26.8   0.3    8.8e-06   21.2   0.1    2.5  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    1.8e-06   24.9   0.1      0.025   11.2   0.0    3.3  3  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    7.7e-06   23.1   0.1    8.6e-05   19.7   0.0    2.3  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    1.4e-05   21.9   0.8     0.0071   13.0   0.0    3.3  3  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    1.8e-05   21.1   0.1     0.0096   12.1   0.0    3.0  3  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    7.1e-05   18.6   0.2     0.0048   12.5   0.0    2.3  2  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00032   17.2   0.2       0.23    7.8   0.0    2.7  3  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    0.00047   16.8   0.6      0.016   11.8   0.0    2.3  2  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0015   15.3   0.0       0.24    8.1   0.0    2.3  2  TIGR00518 alaDH: alanine dehydrogenase
     0.0016   15.2   0.1       0.34    7.5   0.0    2.3  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0023   14.6   0.0     0.0039   13.9   0.0    1.3  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
     0.0047   13.6   3.4     0.0091   12.7   0.1    2.3  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.005   13.2   0.1        0.6    6.3   0.0    2.2  2  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
     0.0051   13.8   4.0      0.098    9.6   0.1    2.6  3  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0069   12.6   5.3      0.081    9.0   0.1    2.8  4  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
     0.0094   12.8   0.0       0.22    8.2   0.0    2.2  2  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
  ------ inclusion threshold ------
       0.02   11.4   3.5       0.25    7.8   0.1    2.6  3  TIGR00551 nadB: L-aspartate oxidase
      0.023   11.5   0.0        1.2    5.9   0.0    2.1  2  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
      0.027   11.6   0.0      0.045   10.8   0.0    1.3  1  TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase
      0.029   11.7   0.0      0.055   10.8   0.0    1.4  1  TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC
       0.17    9.0   4.7        0.2    8.7   0.2    2.2  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase


Domain annotation for each model (and alignments):
>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.0   0.1   2.8e-88   3.2e-86       1     460 [.     113     624 ..     113     627 .. 0.80

  Alignments for each domain:
  == domain 1    score: 288.0 bits;  conditional E-value: 2.8e-88
   TIGR02053   1 ydlviiGsGaaafaaa.ikaaelgakvvlverGilGGtCvnvGCvPSKallraaevaklakkas.vgllaae...........vevdleelleqkkevveelRkeKYed.....vlesydavdllegk.akfk..dektvkvdl....gkevvgakrvliAtGarpavP...eipGLkeaeyltseelleld.....kipeslvviGggaiavElaqlfarlGsevtllqrs.erllkee.epeisaaveellae.eGvevvksakvkavskr..ngg.....k...klvtvekndskk..eveadellvAtGRkpnvdgLnLekvgvkld.erGeilvdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAenalgg.aeakldlevlPkvvFtdPevAsvGlteeelakagie..vesrtvkleavpralinretrGliKlvae.ketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEglk.lAAlaFyrDvskl 460
                 yd+v+iG+G+a+++aa      l + v+++e+  lGG C   GCvPSK +l+ a++ak+a++    +l++++           ++ + ++ +++ +   + + +e Ye+      le++ +++ legk a++   d+ +v  ++     k v++++ +l+ tGa+p +P   +ipGL +++ylt ee++  d     ++p++  v+G+g i+ Elaq++ rlG  vt+++ s  rll++  ++e+s+ ++e++++ e ++vv+   +++v+ +  +++     k   +++ v+ nd+     ve d++l+  GR+pn++g++Lek+g+ +d ++G+i vd++l+ts ++iyAAGD++++ q+ + A+++G vaA n+l   ++     + +P+ +Ft+PevA++G++e+ ++k+  e  v+++ ++l++v ra     t+G+iK++   k+ kk+lg+ ++a+ A+e+++e ++a++ag+    l++ +h+++++a +l+ +AA  +y D+ kl
  MMETSP1061-20121228|5719_1 113 YDMVVIGGGSAGLTAAkFGSGTLKKDVLILEEERLGGDCTWTGCVPSKSILSQAKAAKMARNYAiQKLHQETrtsddgtvddsYRSQSRANFNKVRAYFQRVQQEIYEEddspeALEKF-GIKTLEGKkAHLDenDPTMVVFEDtpsqKKYVIAREGILLCTGAKPVRPtsaDIPGLSDIDYLTYEEIWTRDfgddgTLPHHWTVVGAGPIGCELAQALSRLGASVTIITGSsGRLLPNAdDEEVSQLLKEVFEQdENIKVVQGK-LSKVEASakDKDsfdgtKpcaHIAYVKSNDGGDlvPVEGDAMLLSIGRNPNTKGMGLEKLGIDIDpKTGGIAVDKTLKTSVKSIYAAGDCTGDKQFTHYAGYQGAVAARNILLPfTDPGTLGNDVPTTTFTSPEVATIGYSEAAAKKEFGEkaVAVSKIRLDHVDRAICDDATKGVIKVIYStKGKKKILGATIMAPVAGELVSEISVAMTAGMGFPSLAKAVHPYPSYAFALQaMAAEVYYDDIGKL 624
                 8***********988724555666889999***************************99998774444433311111111111233445667777888888889999853334389999.5*****9736664214556666668887788999999*******999995557***************98654444489*****************************9865269999852689*********99789**99875.333333201221111112221344455555554226899*************************9567*******************************************98613444455789**********************9765226778899******************9865167789*********************************************858999******998 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  269.3   0.1     1e-82   1.2e-80       1     455 [.     112     617 ..     112     622 .. 0.80

  Alignments for each domain:
  == domain 1    score: 269.3 bits;  conditional E-value: 1e-82
   TIGR01350   1 eydvvviGgGpgGYvaA.iraaqlglkvalvekeklGGtClnvGCiPtKalLksaevveelkeakelgieven...............vkldlekllerkekvvkklv..gGvkaLlkknkvevikGe.aklld..kkevevkkekke..kkleakniiiAtGseprelplk..........leedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielld.rilpald.aevskvlkkklkkkg.vkiltn..akvtevekeedevv..........veakkk.evetleaekvLvavGrkpnleelgleklgveld.ergaikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekiagkeks.eidykavPsviytePevasvGlteeqakeeg..ievkvgkfpfaangkalaleetdGfvkvivdkk.tgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaikeaalaal 455
                 eyd+vviGgG +G +aA   ++ l++ v+++e+e+lGG C+ +GC+P+K++L +a+ ++ +++ +  ++++e+                + +++k+ +  ++v +++   +     l+k ++++++G+ a+l +  ++ v  +++ ++   ++  + i++ tG++p +++ +          l ++   ++t  +     ++p++  +vG+G iG+E+a+++++lG+ vt+i  ++ r+lp+ d +evs++lk+ +++++ +k++++  +kv++  k++d++           v+ +++ +   +e++++L+++Gr+pn++++gleklg+++d + g i vd++l+t+v++iya GD++g  +  h A ++g vaa++i+   +   +  + vP+ ++t+Peva++G++e+ ak+e   ++v+v+k+ + ++ +a+  + t+G++kvi+  k +++ilGa+i+++ a el+se+++a+++++   +lak++hp P+++ a++  a++++
  MMETSP1061-20121228|5719_1 112 EYDMVVIGGGSAGLTAAkFGSGTLKKDVLILEEERLGGDCTWTGCVPSKSILSQAKAAKMARNYAIQKLHQETrtsddgtvddsyrsqSRANFNKVRAYFQRVQQEIYeeDDSPEALEKFGIKTLEGKkAHLDEndPTMVVFEDTPSQkkYVIAREGILLCTGAKPVRPTSAdipglsdidyLTYE--EIWTR-DFGDDGTLPHHWTVVGAGPIGCELAQALSRLGASVTIITGSSgRLLPNADdEEVSQLLKEVFEQDEnIKVVQGklSKVEASAKDKDSFDgtkpcahiayVKSNDGgDLVPVEGDAMLLSIGRNPNTKGMGLEKLGIDIDpKTGGIAVDKTLKTSVKSIYAAGDCTGDKQFTHYAGYQGAVAARNILLPFTDpGTLGNDVPTTTFTSPEVATIGYSEAAAKKEFgeKAVAVSKIRLDHVDRAICDDATKGVIKVIYSTKgKKKILGATIMAPVAGELVSEISVAMTAGMGFPSLAKAVHPYPSYAFALQAMAAEVY 617
                 69************99945799********************************9998887775444444433222332322223333455666666666666666541133456789999999999724554322334444444444435667899*********99998887777552222222..34443.44456789******************************976439**9975278*********98766***9873357887777777766777888888766666669999****************************945699*****************************************9655554677899***********************96457899*************************98653789*****************************************999888777665 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   0.1   2.4e-51   2.8e-49       2     429 ..     112     592 ..     111     610 .. 0.76

  Alignments for each domain:
  == domain 1    score: 166.4 bits;  conditional E-value: 2.4e-51
   TIGR01421   2 eydylviGGGsGGiasarr.aaeyGakallveekklGGtcvnvGcvPkkvmwyaaslaelledaadyGfkse...........kenkfnfkelkekrdayvdrln.giyqk.....nlekekvelieGyaeftkde..tvevngke.......ytakhiliatGgkpsip..eniPGae....l...gldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvir.rervlrsfdelisekvveelek..aglevhklskvvkvektvegklvitledg..............keiedvdeliwaiGrkpntkdlglekvgvkldek.gyikvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltkekqksrlklvcagk.eekvvGlhiiGlgvdellqGfavaikmGatk 429
                 eyd++viGGGs G+++a+  ++++   +l++ee++lGG c   GcvP k +   a+ a++ ++ a   +++e           +  + + +++ +k  ay +r++  iy++     +lek  ++ +eG  +  +++  t+ v + +       ++ + il+ tG+kp  p   +iPG +    l    + + +f     lP++  +vGaG i+ ela  l+ lG+   ++     r l + d+  + ++ +e+ +  ++++v +  k+ kve ++++k     ++                   + d+++ +iGr+pntk++glek+g+ +d k g i vd+   t+v++iya Gd +G++++t  a   G   ++ ++ + +d     + vPt  f+ Pe++t+G +e +a +++G++ v v k ++  +  a+  + +k ++k++ + k ++k++G  i+   + el+   +va+  G   
  MMETSP1061-20121228|5719_1 112 EYDMVVIGGGSAGLTAAKFgSGTLKKDVLILEEERLGGDCTWTGCVPSKSILSQAKAAKMARNYAIQKLHQEtrtsddgtvddSYRSQSRANF-NKVRAYFQRVQqEIYEEddspeALEKFGIKTLEGKKAHLDENdpTMVVFEDTpsqkkyvIAREGILLCTGAKPVRPtsADIPGLSdidyLtyeEIWTRDFGDDGTLPHHWTVVGAGPIGCELAQALSRLGASVTIITGsSGRLLPNADDEEVSQLLKEVFEqdENIKVVQ-GKLSKVEASAKDKDSFDGTKPcahiayvksndggdLVPVEGDAMLLSIGRNPNTKGMGLEKLGIDIDPKtGGIAVDKTLKTSVKSIYAAGDCTGDKQFTHYAGYQGAVAARNILLPFTDPGTLGNDVPTTTFTSPEVATIGYSEAAAKKEFGEKAVAVSKIRLDHVDRAICDDATKGVIKVIYSTKgKKKILGATIMAPVAGELVSEISVAMTAGMGF 592
                 7*************999862678889999********************99998888888776665555555556654443211111222333.3445788777527998523333699*********877766554576664444455666566788**********997789***7633221111233556777779*************************9988877515788999888777777777654014555543.3555666555443322222223344444555555444457799************************76489************************************9999999999999999**********************************************************88773678********************99877654 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.3   0.6   1.1e-49   1.2e-47       2     442 ..     112     609 ..     112     613 .. 0.71

  Alignments for each domain:
  == domain 1    score: 160.3 bits;  conditional E-value: 1.1e-49
   TIGR01424   2 dydlfviGaGsGGvraarlaa.alGakvaiaeedlvGGtcvirGcvPkkllvyase...faeel.......edakgyGwevek.......aefdw.kkllakkdkeiarlsglykkllakagvellegraelvdan..tvevle...dgktyt.a.ekiliavGgrpvkp...elPGael..aitsdeafdle.....tlPksilvvGgGyiavefagifrGlGvkvtllyrge.kil.rgfdddvraelaeelee.rGirillktvlk..siekvd...dGlkvtls..........kdeeivadvvllatGrvPnvkglgleaaGvelnda.gaiavdeysrtsvpsiyavGdvtdrinltPvaikeaaafaetefk..nnptkadhdlvatavfsqPevatvGlseeearekftdd.ievyraefrPmkatlsGrqekillklvvdek.ddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeel 442
                 +yd+ viG+Gs G+ aa++ + +l + v i ee+++GG c   GcvP k ++  ++   +a ++       e+  +   +v++       a+f+  + + ++ ++ei   ++   + l+k g++ leg+    d+n  t+ v e   + k+y  a e il+ +G++pv+p   ++PG      +t +e++  +     tlP++  vvG+G i+ e+a+ +  lG+ vt+++  + ++l +  d++v + l+e +e+ + i+++  +  k  +  k++   dG k  +           +  +++ d++ll++Gr+Pn+kg+gle+ G++++ + g iavd+  +tsv+siya Gd t   ++t  a  ++a+ a        +p +   + v t+ f+ Pevat+G se+ a+++f+++ + v +  +  +  ++     k ++k++  +k ++k+lGa ++ + a+e++  +++a+ aG+  +   ++v  +Ps a  l
  MMETSP1061-20121228|5719_1 112 EYDMVVIGGGSAGLTAAKFGSgTLKKDVLILEEERLGGDCTWTGCVPSKSILSQAKaakMARNYaiqklhqETRTSDDGTVDDsyrsqsrANFNKvRAYFQRVQQEIYEEDD-SPEALEKFGIKTLEGKKAHLDENdpTMVVFEdtpSQKKYViArEGILLCTGAKPVRPtsaDIPGLSDidYLTYEEIWTRDfgddgTLPHHWTVVGAGPIGCELAQALSRLGASVTIITGSSgRLLpNADDEEVSQLLKEVFEQdENIKVVQGKLSKveASAKDKdsfDGTKPCAHiayvksndggDLVPVEGDAMLLSIGRNPNTKGMGLEKLGIDIDPKtGGIAVDKTLKTSVKSIYAAGDCTGDKQFTHYAGYQGAVAARNILLpfTDPGTLG-NDVPTTTFTSPEVATIGYSEAAAKKEFGEKaVAVSKIRLDHVDRAICDDATKGVIKVIYSTKgKKKILGATIMAPVAGELVSEISVAMTAGMGFPSLAKAVHPYPSYAFAL 609
                 59*****************761556679*******************99776544400033332111111111111112222211111002332212345555555555433.3578***********877666652334444456655666513256********998844469**7641258999998653333349*******************************976514442455678888888888752689998766433112222221335644222122233332222346789*************************965499******************************9999887776553113455444.569999*********************8762456667788999***************99883578**************************9999988887777777655 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.2   1.1e-40   1.2e-38       2     465 ..     112     607 ..     111     615 .. 0.75

  Alignments for each domain:
  == domain 1    score: 131.0 bits;  conditional E-value: 1.1e-40
   TIGR01438   2 dydliviGgGsGGlaaakeaa.klgakvllldfvkptpqGtkwGiGGtcvnvGcipkklm.hq..aallGkalk..dskkyGwnveeq.vkhdweklskavqdrikslnf.....syrv.....alrekkvkyinayaelvdkd...vikatdk.kkkeeilsakrvliatGlrpkyp..ddieGakel.sitsddlfslk.....kvpGktlvvGasyvalecaGflaalgldvtvlvrs..ill.rGfdqdcavkvkeyl.keqGvkfkeqvlpkkvekvea.............kvlvkftdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdske.ivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeef 465
                 +yd++viGgGs Gl+aak  +  l + vl+l+            +GG c   Gc+p k +  q  aa + +++   + ++     ++  v   ++  s+a  +++++        +y       al++  +k +++     d++   ++   d   +k+ +++ + +l++tG +p  p   di+G  ++  +t +++++       + p    vvGa+ +  e a  l+ lg  vt++  s   ll    d+++ + +ke + +++ +k+ ++ l  kve+  +                vk+ d ++ +  e d++l++iGr++++k+++le++g+ ++ k+g i +d+  +t+v+siya Gd   dk+ +t  a   G + a+ +    ++     ++vptt ft  e +++G+se  a + +Ge++v v + ++  ++ ++ +    +k ++kv+   + +++++G  ++ p age++  ++va+  g+    l ++  +hp  +  f
  MMETSP1061-20121228|5719_1 112 EYDMVVIGGGSAGLTAAKFGSgTLKKDVLILEE---------ERLGGDCTWTGCVPSKSIlSQakAAKMARNYAiqKLHQETRTSDDGtVDDSYRSQSRANFNKVRAYFQrvqqeIYEEddspeALEKFGIKTLEGKKAHLDENdptMVVFEDTpSQKKYVIAREGILLCTGAKPVRPtsADIPGLSDIdYLTYEEIWTRDfgddgTLPHHWTVVGAGPIGCELAQALSRLGASVTIITGSsgRLLpNADDEEVSQLLKEVFeQDENIKVVQGKL-SKVEASAKdkdsfdgtkpcahIAYVKSNDGGDLVPVEGDAMLLSIGRNPNTKGMGLEKLGIDIDPKTGGIAVDKTLKTSVKSIYAAGDCTGDKQ-FTHYAGYQGAVAARNILLPFTDpGTLGNDVPTTTFTSPEVATIGYSEAAAKKEFGEKAVAVSKIRLDHVDRAICDDA--TKGVIKVIYSTKGKKKILGATIMAPVAGELVSEISVAMTAGMGFPSLAKA--VHPYPSYAF 607
                 7****************9765166777888764.........359***********88651331156666654421222223333332477778888888778887754311111343222222567777887777654444444645555555466777778889******9887662248***9887347888888876222225677777*************************9873424514556667777777661456787776644.344443335789999*9998666799999999999*****************************************************998876.89999999****99876655440555689*****************************************9998655..5899*************************************999998775..566555544 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.1   5.7e-40   6.5e-38       2     432 ..     112     597 ..     111     606 .. 0.72

  Alignments for each domain:
  == domain 1    score: 128.6 bits;  conditional E-value: 5.7e-40
   TIGR03452   2 hydliiiGtGsGn...silderfedkriaivekGtfGGtclnvGciptkmfvyaaevakevke........sarlgidaeidsvrwpdivsrvfed.ridpiaasGeeyrrgdktpnidvyesharfv........grktlrtedgee.....itadqvviaaGsrpvipeaia...esgvryytnedimrlp.....elpeslvivGgGyialefahvfsalGtkvtlvarse.kllrkld.ediserftelakkkfdvrlg....rnvtaaeqddd...gvt.......lelddGst...veadvllvatGrvpngdlldaeaaGvevd.edgrvkvdeyqrtsaegvfalGdvsspyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqd..ygdvayGwamedteglakliad.kdtGkllGahiiGaqassliqqlitalafgldarelar 432
                 +yd+++iG Gs     +  +    +k + i+e+  +GG c   Gc+p+k  +  a+ ak  ++         +r + d+++d+   ++  +  f++ r        e y   d    ++ +  ++           ++ ++  ed+ +     i+ + +++ +G++pv p        s+++y t e+i   +      lp++  +vG+G i  e+a+ +s lG++vt+++ s+ +ll ++d e++s+ ++e+ ++  +++      ++v a+ +d+d   g +       ++ +dG +   ve+d +l+++Gr pn+  + +e+ G+++d + g + vd+  +ts+++++a Gd + + q+ h a  +  v ++n+l +     +  + vp++ ft p +at+G +e+ a+++  + +v v +     v      + t+g++k+i   k+  k+lGa i+ + a  l+ ++  a++ g+    la+
  MMETSP1061-20121228|5719_1 112 EYDMVVIGGGSAGltaAKFGSGTLKKDVLILEEERLGGDCTWTGCVPSKSILSQAKAAKMARNyaiqklhqETRTSDDGTVDDSYRSQS-RANFNKvRAYFQRVQQEIYEEDDSPEALEKFGIKTLEGkkahldenDPTMVVFEDTPSqkkyvIAREGILLCTGAKPVRPTSADipgLSDIDYLTYEEIWTRDfgddgTLPHHWTVVGAGPIGCELAQALSRLGASVTIITGSSgRLLPNADdEEVSQLLKEVFEQDENIKVVqgklSKVEASAKDKDsfdGTKpcahiayVKSNDGGDlvpVEGDAMLLSIGRNPNTKGMGLEKLGIDIDpKTGGIAVDKTLKTSVKSIYAAGDCTGDKQFTHYAGYQGAVAARNILLPFTDPGTLGNDVPTTTFTSPEVATIGYSEAAAKKEFGEKAVAVSKirLDHVDRAICDDATKGVIKVIYStKGKKKILGATIMAPVAGELVSEISVAMTAGMGFPSLAK 597
                 6*********96411123345567899**********************9998777776555410000100555666666665433332.2234321333344444555555533345555555544423333454444555555443678889999********9987765431115889********86543333379******************************98763688777526799999998888777665311113555555554422222122222237788886533479**************************846789********************************************7777788899*********************97755555555541145566666677799*****965267889***********************9988777665 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.0   0.2     3e-26   3.4e-24       3     481 ..     112     623 ..     110     628 .. 0.73

  Alignments for each domain:
  == domain 1    score: 83.0 bits;  conditional E-value: 3e-26
   TIGR01423   3 aydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtgaqymdtlresagfgw..e...ldaesvkanwkaliaak.nkavldindsyedmfkdte........glefflgfgaledknvvlvresadpkskvkerldaeyillatgswp...qmlkiegiel..cissneafyle.....eapkrvltvgggyisvefagifnaykavggkvdlayr.ndmilrgfdselrkeltkqlvangidvrt.......nenpakveknadgsk...hvvf...esgke...ldvdvvmlaigrlprsqtlqldkvgvela.dkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtvf.askprktdhtkvasavfsippigvcglveeeaakkyekvavyess..ftplmhnisgskykkfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeelcsmrtpayyyikgk 481
                  yd+vvig gs gl a    +   kk v +++ +          lgg c   gcvp k +++ a+     r+ a      e    d  +v   +++   a+ nk  +  +   ++++++ +        g++   g  a  d+n  ++    d  s+ k  +  e ill+tg+ p      +i+g      ++ +e +  +       p+   +vg g i  e+a    a    g  v+++   +  +l   d e   +l k++  +  +++         e  ak +   dg+k   h+++   + g +   ++ d ++l+igr p ++ + l+k g+++  + g i vd+  kt v+ iya gd t+   +t  a  +ga     ++       t    v ++ f+ p + + g+ e  a k++ + av  s   +  +   i     k  +  i + ++  ++lg  ++   + e++  +++++  +     + +++  +p+ a  l +m +  yy   gk
  MMETSP1061-20121228|5719_1 112 EYDMVVIGGGSAGLTAAKFGSGTLKKDVLILEEE---------RLGGDCTWTGCVPSKSILSQAKAAKMARNYAIQKLhqEtrtSDDGTVDDSYRSQSRANfNKVRAYFQRVQQEIYEEDDspealekfGIKTLEGKKAHLDENDPTMVVFEDTPSQKKYVIAREGILLCTGAKPvrpTSADIPGLSDidYLTYEEIWTRDfgddgTLPHHWTVVGAGPIGCELAQ---ALSRLGASVTIITGsSGRLLPNADDEEVSQLLKEVFEQDENIKVvqgklskVEASAKDKDSFDGTKpcaHIAYvksNDGGDlvpVEGDAMLLSIGRNPNTKGMGLEKLGIDIDpKTGGIAVDKTLKTSVKSIYAAGDCTGDKQFTHYAGYQGAVAARNILlPFTDPGTLGNDVPTTTFTSPEVATIGYSEAAAKKEFGEKAVAVSKirLDHVDRAICDDATKGVIKVIYSTKGKKKILGATIMAPVAGELVSEISVAMTAGMGFPSLAKAVHPYPSYAFALQAMAAEVYYDDIGK 623
                 69*************9999998899999998765.........59***************99998888777776543311211145667777777766554144444445555555554440000011144444555554444433344445667777888999********976222678999975412477777765542222235899999*********996...667789999987651557788888777777777776665555431011111355555556679998666777632222322222466999**********************73779***********************************98887775144556788899*************************88766666511566777888888888777788899*************************************999999*********99999977665 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.081       9.2       2      32 ..     115     144 ..     114     154 .. 0.74
   2 !   59.8   0.0   3.7e-19   4.3e-17      79     413 ..     240     591 ..     222     606 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.081
   TIGR03385   2 ivivGgvaaGasaAsrvrRLkkesdiivfek 32 
                 +v++Gg++aG +aA +    + ++d+ ++e+
  MMETSP1061-20121228|5719_1 115 MVVIGGGSAGLTAA-KFGSGTLKKDVLILEE 144
                 69*********987.4444455556666665 PP

  == domain 2    score: 59.8 bits;  conditional E-value: 3.7e-19
   TIGR03385  79 vikvdkeektvvv.knnktnekyeesyDkLilstGAkpkileiegi.eldavftlrnledaeai.kkyl.dkkkvekvvviGgGyiglemvealkergkevtlier.sekilnkllDeeiakiveeelekkeielrlneevksve..........geek...vevltsgkv.....yqaDlvilavGvkPnsel..ikssqlklg.kkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGkdiefkGvlGtsi..vkfldltiaktGltenelkklnidyktvevk.....akakanYYPgakdlllklivekd.tkkilgaqavGkegvlkRidvlaaaikaklt 413
                   ++d+++ t+vv  ++  ++ky  + + ++l tGAkp ++   +i  l  + +l      e   +++  d +  ++ +v+G+G ig e++ al + g  vt+i   s ++l +  Dee+++ ++e +e+ e   +++ ++++ve          g +    +  ++s++       + D+++l++G +Pn++   ++++++ ++ k+G i v++ ++tsv+ iya+GD++  k++             a  +g ++a ni     + +G+lG+ +  + f + ++a++G  e  +kk ++  k v v      +  +a    +a++ ++k+i+ ++  kkilga ++    + + +  +++a++a++ 
  MMETSP1061-20121228|5719_1 240 KAHLDENDPTMVVfEDTPSQKKYVIAREGILLCTGAKPVRPTSADIpGLSDIDYL---TYEEIWtRDFGdDGTLPHHWTVVGAGPIGCELAQALSRLGASVTIITGsSGRLLPNADDEEVSQLLKEVFEQDENIKVVQGKLSKVEasakdkdsfdGTKPcahIAYVKSNDGgdlvpVEGDAMLLSIGRNPNTKGmgLEKLGIDIDpKTGGIAVDKTLKTSVKSIYAAGDCTGDKQF----------THYAGYQGAVAARNILL-PFTDPGTLGNDVptTTFTSPEVATIGYSEAAAKK-EFGEKAVAVSkirldHVDRA-ICDDATKGVIKVIYSTKgKKKILGATIMAPV-AGELVSEISVAMTAGMG 591
                 4556666666555155668899*****************9988875444444444...4333330344414567899***************************861568888888999999999999876533334444444441111100000333211133445433211222577*************9623578888887678**********************998875..........4568889*******986.46679*****9755899*************9995.56666665541111034444.4556677778998876516789999887654.77777788888887765 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.7e-06   0.00054       1      42 [.     113     155 ..     113     187 .. 0.87
   2 !   33.4   0.1   3.9e-11   4.4e-09     145     295 ..     315     486 ..     310     488 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.7e-06
   TIGR01292   1 ydviiiGaGpaGltaaiYaaranlk.tlliegkeaggqltttt 42 
                 yd+++iG+G aGltaa +++ +  k +l++e+++ gg  t t 
  MMETSP1061-20121228|5719_1 113 YDMVVIGGGSAGLTAAKFGSGTLKKdVLILEEERLGGDCTWTG 155
                 79****************9987666377889999999988776 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 3.9e-11
   TIGR01292 145 avvGggdsAveealyLskiakkVtlvh........rrdklraekillerlkknekievllns..tve.......eikGdekvesvk.ikntktkeeeelkvdgvFiaiGhepntellkel...leld.eegyivvdeemrTsveGvfaaGDvrdkslrQvvt.aagdGaiAals 295
                 +vvG g   +e a+ Ls+++ +Vt+++        + d    +++l e +++ e+i+v+  +  +ve         +G++   ++  +k++  ++   ++ d++ + iG +pnt+ +  +   +++d ++g i vd++ +Tsv+ ++aaGD++    +Q    a  +Ga+Aa +
  MMETSP1061-20121228|5719_1 315 TVVGAGPIGCELAQALSRLGASVTIITgssgrllpNADDEEVSQLLKEVFEQDENIKVVQGKlsKVEasakdkdSFDGTKPCAHIAyVKSNDGGDLVPVEGDAMLLSIGRNPNTKGMGLEklgIDIDpKTGGIAVDKTLKTSVKSIYAAGDCTG--DKQFTHyAGYQGAVAARN 486
                 699999999**************999833322222235566777888888888899987543112221111111344555444444256666677888999*************97643334888884579*********************98..466655155589999976 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.8e-09     2e-07       5      48 ..     113     157 ..     110     186 .. 0.84
   2 !    9.9   0.0   0.00047     0.053     148     284 ..     316     468 ..     312     488 .. 0.65

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.8e-09
   TIGR03143   5 ydlvviGgGpaglsaGiya.graklkvliiekdelGGqititsev 48 
                 yd+vviGgG+agl+a  ++ g  k +vli+e ++lGG  t t  v
  MMETSP1061-20121228|5719_1 113 YDMVVIGGGSAGLTAAKFGsGTLKKDVLILEEERLGGDCTWTGCV 157
                 9*************99885277899*************9999766 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00047
   TIGR03143 148 viGgGfaaaeeavfltkyakkvtvivrepdftcakaiaekvkanPkievkfnvelkevtGddvlreakfvnnat..Ge....eteykakkdegtf......GvfvfvGyvPsself...kgkveld.erGyvvtnedletnveGvyaaGdlrv 284
                 v+G+G    e a  l++ + +vt+i    +   ++a  e+v +  k   + + ++k v+G+    ea+ +++ +  G     +  y   +d g +       +++ +G  P+++ +   k  +++d + G +  +++l+t+v+ +yaaGd   
  MMETSP1061-20121228|5719_1 316 VVGAGPIGCELAQALSRLGASVTIITGSSGRLLPNADDEEVSQLLKEVFEQDENIKVVQGKLSKVEASAKDKDSfdGTkpcaHIAYVKSNDGGDLvpvegdAMLLSIGRNPNTKGMgleKLGIDIDpKTGGIAVDKTLKTSVKSIYAAGDCTG 468
                 7888888888888888888888888888888888888888888887777777778888887776666666554411321111344543333332222222146677899999985421155577776789********************754 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.3   2.7e+02     142     157 ..     114     129 ..      95     133 .. 0.85
   2 !   38.1   0.0   1.2e-12   1.4e-10     144     279 ..     315     468 ..     216     488 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.3
   TIGR02374 142 kaaviGgGLLGLeaar 157
                 + +viGgG  GL aa+
  MMETSP1061-20121228|5719_1 114 DMVVIGGGSAGLTAAK 129
                 569**********996 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 1.2e-12
   TIGR02374 144 aviGgGLLGLeaaraLknlGldvsviela.pllmakqlDqtagrlLqrelek.kGltvllek.etveivkes.........vekaerlrfkDGssl...eadlvvlaaGirPrde.La.aeaGlkvndr.rGiivndsmqtsdPdiyavGecae 279
                 +v+G+G +G e a+aL +lG  v +i  +  +l+ +  D+  ++lL++  e+ + ++v  +k   ve + ++         + +++ ++ +DG  l   e d ++l++G  P+++ ++  + G++++++ +Gi v++ ++ts   iya G+c  
  MMETSP1061-20121228|5719_1 315 TVVGAGPIGCELAQALSRLGASVTIITGSsGRLLPNADDEEVSQLLKEVFEQdENIKVVQGKlSKVEASAKDkdsfdgtkpCAHIAYVKSNDGGDLvpvEGDAMLLSIGRNPNTKgMGlEKLGIDIDPKtGGIAVDKTLKTSVKSIYAAGDCTG 468
                 79************************86516899999999999999999986356777664422344443331111110123456778899*987444499************984443578*****87478********************75 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0073      0.84     117     150 ..      96     129 ..      85     149 .. 0.90
   2 !   29.4   0.0   6.7e-10   7.7e-08     275     445 ..     314     487 ..     288     488 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0073
   TIGR01316 117 arehGieeeeekapstkkkvaviGaGpaGlavas 150
                 +r++G    +e +ps +  + viG G aGl+ a+
  MMETSP1061-20121228|5719_1  96 NRNSGSLSAQEPTPSGEYDMVVIGGGSAGLTAAK 129
                 6999999************************986 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 6.7e-10
   TIGR01316 275 vvviGgGntavdaartalrlGaevhvvy.rrtredmtareeeikhaeeeGvkfefllqpveviGdeeGevkavkfektelqeerdsgekrkvpv..tdeevkleadavivaiGqeank..iiaedsslkts.krGtivvdedletsieGvfaGGdvirGeatvilalgdGkraakai 445
                   v+G+G +  + a++  rlGa v+++    +r    a +ee++++ +e  + +     ++v+  +  +v+a    k      + + +   v +  +++ v +e da++++iG+++n   +  e+ ++ +  k+G i vd+ l+ts++ ++a Gd    ++    a  +G  aa+ i
  MMETSP1061-20121228|5719_1 314 WTVVGAGPIGCELAQALSRLGASVTIITgSSGRLLPNADDEEVSQLLKEVFEQD---ENIKVVQGKLSKVEASAKDKDSFDGTKPCAHIAYVKSndGGDLVPVEGDAMLLSIGRNPNTkgMGLEKLGIDIDpKTGGIAVDKTLKTSVKSIYAAGDCTGDKQFTHYAGYQGAVAARNI 487
                 579********************9988626789999***********9976654...5778888888888888777766666666666555555115578999*************973345566788886367*********************9766666666767777777665 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00038     0.044     201     254 ..     101     156 ..      90     184 .. 0.70
   2 !   21.8   0.6   1.1e-07   1.3e-05     356     492 ..     315     470 ..     310     488 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00038
   TIGR03140 201 ekaeeaeeekekydvlvvGgGPagaaaaiyaarkGlkvalv..aeriGGqvkdtvg 254
                 + ++++ +   +yd++v+GgG ag +aa + +    k  l+   er+GG  + t  
  MMETSP1061-20121228|5719_1 101 SLSAQEPTPSGEYDMVVIGGGSAGLTAAKFGSGTLKKDVLIleEERLGGDCTWTGC 156
                 446667777889****************9976544444444225789988776655 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 1.1e-07
   TIGR03140 356 aviGGGnsGieaaidlaGivehvtvle........fadelkadkvlveklkslsnvdilt........saktkeivgdgdkvtglkykdrs.seeekkleldGvfvqiGlvpntefl..kda.veln.rrGeividergrtsvkGifaaGdvttvpyk 492
                  v+G G  G e a  l+ +   vt++          ad+    ++l e  ++ +n++++         sak k+     +    + y + +  ++   +e d +++ iG  pnt+ +  +++ ++++ ++G i +d++ +tsvk i+aaGd+t    k
  MMETSP1061-20121228|5719_1 315 TVVGAGPIGCELAQALSRLGASVTIITgssgrllpNADDEEVSQLLKEVFEQDENIKVVQgklskveaSAKDKDSFDGTKPCAHIAYVKSNdGGDLVPVEGDAMLLSIGRNPNTKGMglEKLgIDIDpKTGGIAVDKTLKTSVKSIYAAGDCTGD--K 470
                 6889999999999999888888887642111111145666667888899999999998752111111122222222223345667776655156778899999***********9652244458875489**********************965..3 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.2e-06   0.00026       1      56 [.     113     169 ..     113     218 .. 0.72
   2 !   12.9   0.0   0.00013     0.014       5      29 ..     316     340 ..     314     388 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.2e-06
   TIGR02032   1 yDvvvvGaGpaGssaAlrlakk.GlrVlllekkelprekeCggalskraveelelpk 56 
                 yD+vv+G+G aG +aA   + +   +Vl+le+++l ++ + +g ++ +++    +  
  MMETSP1061-20121228|5719_1 113 YDMVVIGGGSAGLTAAKFGSGTlKKDVLILEEERLGGDCTWTGCVPSKSILSQAKAA 169
                 9***********88776433221348*******************999876555533 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00013
   TIGR02032   5 vvGaGpaGssaAlrlakkGlrVlll 29 
                 vvGaGp G+ +A  l++ G++V ++
  MMETSP1061-20121228|5719_1 316 VVGAGPIGCELAQALSRLGASVTII 340
                 9*********************998 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0       0.1        12     137     160 ..     104     127 ..      91     210 .. 0.81
   2 !   27.6   0.0     3e-09   3.4e-07     147     281 ..     313     467 ..     297     488 .. 0.77

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.1
   TIGR03169 137 ekakaseetkslavvGgGaagvEl 160
                 +++ ++++  +++v+GgG ag+  
  MMETSP1061-20121228|5719_1 104 AQEPTPSGEYDMVVIGGGSAGLTA 127
                 45556677779**********865 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 3e-09
   TIGR03169 147 slavvGgGaagvElalalrkrlkkrglkaevsla..seakllqal.sakvrklvkrllak.rgievlekeevtevede.................alll...aegetleadavllatgakapaw...Laesglslded.GflavkktLqslshpevFaaGDca 281
                 + +vvG+G  g Ela al ++ ++        ++  s+++ll++   ++v +l+k+++++ ++i+v++ +  +  e++                  +++   ++   +e da+ll++g ++ +    L++ g+++d++ G +av+ktL++ s ++++aaGDc 
  MMETSP1061-20121228|5719_1 313 HWTVVGAGPIGCELAQALSRLGASVT------IItgSSGRLLPNAdDEEVSQLLKEVFEQdENIKVVQGKLSKV-EASakdkdsfdgtkpcahiaYVKSndgGDLVPVEGDAMLLSIGRNPNTKgmgLEKLGIDIDPKtGGIAVDKTLKT-SVKSIYAAGDCT 467
                 679************99988766555......443677888876516789999999997636899998764333.32335689********9998455521134455788********998863344*********744**********9.99*********6 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.039       4.5     529     574 ..     105     149 ..      81     168 .. 0.73
   2 !   21.2   0.1   7.7e-08   8.8e-06     662     816 ..     307     468 ..     269     490 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.039
   TIGR03315 529 ekpqlksekhkvaviGaGPaGlsagyflara.GlpvtvfekkekagG 574
                 ++p  ++e   + viG+G aGl+a+ f +     +v ++e++ + gG
  MMETSP1061-20121228|5719_1 105 QEPTPSGEY-DMVVIGGGSAGLTAAKFGSGTlKKDVLILEEE-RLGG 149
                 455555555.789************99765414456666543.4444 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 7.7e-08
   TIGR03315 662 klklGkrvvvvGgGntamdaaraalrvpGvekvtvvyrrtkkemP.askeeleealedGvefkellsPekfedgklvcekmklgekdasGrrrp......v...etgelveleadaviaavGeqvdtel..lkklgieldek.gkvvvneetketsvtnvfviGdakk 816
                 + +l ++ +vvG+G +  + a+a  r+     vt++   + + +P a+ ee+++ l++  e  e    +k+ +gkl   + + ++kd     +p      v   + g+lv +e da+++++G++ +t+   l+klgi++d k g + v++ t  tsv+ ++ +Gd + 
  MMETSP1061-20121228|5719_1 307 DGTLPHHWTVVGAGPIGCELAQALSRLG--ASVTIITGSSGRLLPnADDEEVSQLLKEVFEQDEN---IKVVQGKLSKVEASAKDKDSFDGTKPcahiayVksnDGGDLVPVEGDAMLLSIGRNPNTKGmgLEKLGIDIDPKtGGIAVDK-TLKTSVKSIYAAGDCTG 468
                 45788999***************99996..479***********956778888888886655554...55556666655556666665433333112122311145789**************9998742489*******6526777776.5*************864 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.22        25     143     163 ..     112     132 ..      86     199 .. 0.72
   2 !    8.0   0.0    0.0021      0.23     128     172 ..     296     340 ..     288     347 .. 0.84
   3 !   11.2   0.0   0.00022     0.025     401     473 ..     413     486 ..     358     492 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.22
   TIGR01317 143 GkkvavvGsGPaGlaaadqln 163
                    + v+G G aGl+aa+  +
  MMETSP1061-20121228|5719_1 112 EYDMVVIGGGSAGLTAAKFGS 132
                 445667788888887777544 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0021
   TIGR01317 128 feeGwvkPrppkkrtGkkvavvGsGPaGlaaadqlnraGhtvtvf 172
                 +ee w +    +    ++ +vvG+GP G   a+ l+r G +vt+ 
  MMETSP1061-20121228|5719_1 296 YEEIWTRDFGDDGTLPHHWTVVGAGPIGCELAQALSRLGASVTII 340
                 66677777777777777889***********************85 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 0.00022
   TIGR01317 401 leadlvllalGfv.gpeqallddlgvdkdergnikaeldesetsidGvfaaGdarrGqslivwaineGreaara 473
                 +e d +ll++G   +++ + l++lg+d d +    a +++ +ts++ ++aaGd+   + +  +a  +G  aar+
  MMETSP1061-20121228|5719_1 413 VEGDAMLLSIGRNpNTKGMGLEKLGIDIDPKTGGIAVDKTLKTSVKSIYAAGDCTGDKQFTHYAGYQGAVAARN 486
                 577899*****8624555689********9877779999999************99999999998888888886 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   7.5e-07   8.6e-05      21      90 ..     112     182 ..     104     208 .. 0.82
   2 ?    0.2   0.0      0.66        75      26      50 ..     316     340 ..     312     344 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 7.5e-07
   TIGR00292  21 esDviivGaGpsGLtaayylakeg.lkvvvlerklaiGGGswgGGmlfskivvekeakelLdelgiryede 90 
                 e D++++G+G++GLtaa++ +      v++le +   G  +w G    + i  + +a ++ ++  i+  ++
  MMETSP1061-20121228|5719_1 112 EYDMVVIGGGSAGLTAAKFGSGTLkKDVLILEEERLGGDCTWTGCVPSKSILSQAKAAKMARNYAIQKLHQ 182
                 679**************99765542448999999888889**********************999986544 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.66
   TIGR00292  26 ivGaGpsGLtaayylakeglkvvvl 50 
                 +vGaGp G   a+ l++ g  v ++
  MMETSP1061-20121228|5719_1 316 VVGAGPIGCELAQALSRLGASVTII 340
                 9****************99999887 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.37        42       1      15 [.     114     128 ..     114     148 .. 0.73
   2 ?    4.3   0.1     0.028       3.2       3      28 ..     315     340 ..     313     346 .. 0.87
   3 !   13.0   0.0   6.3e-05    0.0071     230     293 ..     407     471 ..     394     489 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.37
   TIGR04018   1 dviiiGaGPiGlaaa 15 
                 d+++iG+G  Gl+aa
  MMETSP1061-20121228|5719_1 114 DMVVIGGGSAGLTAA 128
                 799*********987 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.028
   TIGR04018   3 iiiGaGPiGlaaaieakkaglsylii 28 
                  ++GaGPiG   a ++ + g s++ii
  MMETSP1061-20121228|5719_1 315 TVVGAGPIGCELAQALSRLGASVTII 340
                 589******99999999999999988 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 6.3e-05
   TIGR04018 230 egeveeiendfvlaltGyrpdlel..leklgveleedekipvydeetmEtnveglylaGvvaagle 293
                  g+   +e d +l+ +G +p+++   leklg++++ +++  ++d +t+ t+v+++y aG +++  +
  MMETSP1061-20121228|5719_1 407 GGDLVPVEGDAMLLSIGRNPNTKGmgLEKLGIDIDPKTGGIAVD-KTLKTSVKSIYAAGDCTGDKQ 471
                 567778999************984348**********8766666.67************9887665 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   8.4e-05    0.0096     377     428 ..     110     161 ..      95     178 .. 0.79
   2 ?    4.8   0.0     0.014       1.6     381     409 ..     313     341 ..     297     381 .. 0.87
   3 ?   -0.1   0.0      0.42        48     610     644 ..     451     486 ..     448     487 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.4e-05
   TIGR03997 377 rrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgre 428
                 + +  ++v+GgG aGl+aa+  +    + +l+ +ee+lGG  + +  +p ++
  MMETSP1061-20121228|5719_1 110 SGEYDMVVIGGGSAGLTAAKFGSGTLKKDVLILEEERLGGDCTWTGCVPSKS 161
                 4456789*************98877777777777899***998888887766 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.014
   TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtlle 409
                 + +vvG+GP G e a+  +r G +vt++ 
  MMETSP1061-20121228|5719_1 313 HWTVVGAGPIGCELAQALSRLGASVTIIT 341
                 568***********************985 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.42
   TIGR03997 610 lslkdkvlevyriGDclaPRrv.eaaileGervala 644
                 ++lk +v+ +y +GDc   ++  + a ++G   a++
  MMETSP1061-20121228|5719_1 451 KTLKTSVKSIYAAGDCTGDKQFtHYAGYQGAVAARN 486
                 5799************99887526677788777766 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   4.2e-05    0.0048     170     210 ..     114     154 ..     109     218 .. 0.82
   2 ?    3.6   0.0     0.021       2.4     173     198 ..     316     341 ..     310     352 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.2e-05
   TIGR01372 170 DvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllse 210
                 D++v+G+G+aGL+aA+  + +  + +l+ e+++ GG  +++
  MMETSP1061-20121228|5719_1 114 DMVVIGGGSAGLTAAKFGSGTLKKDVLILEEERLGGDCTWT 154
                 99**********************9***9*******98875 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.021
   TIGR01372 173 vvGaGpaGLaaAraAaraGarvilvd 198
                 vvGaGp G   A+a +r Ga+v+++ 
  MMETSP1061-20121228|5719_1 316 VVGAGPIGCELAQALSRLGASVTIIT 341
                 9*********************9975 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       1.2   1.3e+02     144     159 ..     115     130 ..     108     229 .. 0.82
   2 !    6.5   0.0    0.0052      0.59     127     169 ..     297     339 ..     271     348 .. 0.86
   3 !    7.8   0.0     0.002      0.23     384     462 ..     412     488 ..     343     492 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.2
   TIGR01318 144 vaviGaGpaGlacadv 159
                 + viG+G aGl+ a  
  MMETSP1061-20121228|5719_1 115 MVVIGGGSAGLTAAKF 130
                 5689999999988865 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0052
   TIGR01318 127 akgwrpdlskvkktgkrvaviGaGpaGlacadvlaraGvkvvv 169
                 ++ w  d+ +     ++ +v+GaGp G   a+ l+r G  v++
  MMETSP1061-20121228|5719_1 297 EEIWTRDFGDDGTLPHHWTVVGAGPIGCELAQALSRLGASVTI 339
                 5667778777777788889*******************99987 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.002
   TIGR01318 384 vleadvviiafGfephame.wlaehgikld.skGrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeGrkaaegil 462
                  +e d+++++ G +p++    l++ gi++d ++G i ++    ++ +ts + i+a Gd+    ++   a  +G  aa++il
  MMETSP1061-20121228|5719_1 412 PVEGDAMLLSIGRNPNTKGmGLEKLGIDIDpKTGGIAVD----KTLKTSVKSIYAAGDCTGDKQFTHYAGYQGAVAARNIL 488
                 4899**********98765169*******9567888888....7899************9999999999999999999987 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00014     0.016       1      39 [.     114     151 ..     114     183 .. 0.85
   2 ?    3.1   0.0     0.062         7     390     419 ..     437     468 ..     431     484 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00014
   TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNs 39 
                 d+vv+G G+AGl+aa     +  ++v++le +  +GG  
  MMETSP1061-20121228|5719_1 114 DMVVIGGGSAGLTAAKFGSGTLKKDVLILEEER-LGGDC 151
                 78*************999999999999999765.56665 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.062
   TIGR01813 390 GvkintkaeVldens..ekpikgLfAaGEvtG 419
                 G+ i+ k+  ++ ++  ++ +k ++AaG+ tG
  MMETSP1061-20121228|5719_1 437 GIDIDPKTGGIAVDKtlKTSVKSIYAAGDCTG 468
                 8899999987655441157899*********9 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.021       2.4     168     196 ..     113     142 ..      87     147 .. 0.80
   2 !    8.1   0.0    0.0021      0.24     167     203 ..     311     347 ..     305     374 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.021
   TIGR00518 168 gkvtiiGgGvvGtnaaklavG.lGatvtil 196
                  ++++iGgG +G  aak+  G l  +v il
  MMETSP1061-20121228|5719_1 113 YDMVVIGGGSAGLTAAKFGSGtLKKDVLIL 142
                 4789*************9988445566555 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0021
   TIGR00518 167 agkvtiiGgGvvGtnaaklavGlGatvtildinvdrl 203
                 + + t++G+G +G + a+    lGa+vti+     rl
  MMETSP1061-20121228|5719_1 311 PHHWTVVGAGPIGCELAQALSRLGASVTIITGSSGRL 347
                 56779************************97666655 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.012       1.4       1      36 [.     114     149 ..     114     209 .. 0.72
   2 !    7.5   0.0     0.003      0.34       4      33 ..     316     344 ..     313     387 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.012
   TIGR01988   1 divIvGgGlvGlalAlaLassa.dlkvalveakaaek 36 
                 d+v++GgG +Gl+ A ++ s + +++v+++e++++  
  MMETSP1061-20121228|5719_1 114 DMVVIGGGSAGLTAA-KFGSGTlKKDVLILEEERLGG 149
                 89*********9866.566555688888888876655 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.003
   TIGR01988   4 IvGgGlvGlalAlaLassadlkvalveaka 33 
                 +vG+G++G  lA aL++ +  +v+++  + 
  MMETSP1061-20121228|5719_1 316 VVGAGPIGCELAQALSRLG-ASVTIITGSS 344
                 9***************888.9999998763 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.4e-05    0.0039      22      69 ..     104     150 ..      87     171 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.4e-05
   TIGR01373  22 wrspepkpeydviivGgGGhGlatayylakehGitnvavlekgwlGgG 69 
                  ++p+p  eyd++++GgG  Gl++a + +      +v +le + lGg 
  MMETSP1061-20121228|5719_1 104 AQEPTPSGEYDMVVIGGGSAGLTAAKFGSGTL-KKDVLILEEERLGGD 150
                 478*******************9998765544.467888888888875 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1     8e-05    0.0091       2      31 ..     116     146 ..     115     155 .. 0.87
   2 ?    1.3   0.2      0.23        26       3      28 ..     316     341 ..     314     346 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8e-05
   TIGR00275   2 iiiGgGaaGlmaAitaae.egakVlllEknk 31 
                 ++iGgG aGl+aA   +   +++Vl+lE+++
  MMETSP1061-20121228|5719_1 116 VVIGGGSAGLTAAKFGSGtLKKDVLILEEER 146
                 8************9987668999****9875 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.23
   TIGR00275   3 iiGgGaaGlmaAitaaeegakVlllE 28 
                 ++G+G+ G   A ++++ ga+V+++ 
  MMETSP1061-20121228|5719_1 316 VVGAGPIGCELAQALSRLGASVTIIT 341
                 9**********************985 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.018         2     373     410 ..     113     150 ..      99     174 .. 0.82
   2 !    6.3   0.0    0.0053       0.6     371     531 ..     310     342 ..     260     354 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.018
   TIGR03996 373 gdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGm 410
                  d++v+GGG aGl aa+  +   ++  l+ +  rlGG 
  MMETSP1061-20121228|5719_1 113 YDMVVIGGGSAGLTAAKFGSGTLKKDVLILEEERLGGD 150
                 5789*************987776666666667788885 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0053
   TIGR03996 371 tpgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargdGlsrlaaladwledecrrlGvelrlgaavdaeeldaaraaGevvvlatGsvarplpapvdatvrvldaaevleaddalaeGpvvvidplGGpvgvavaealaarGrdvsivtp 531
                  p +  vvG                                                                                                                                 Gp+g  +a+al+ +G +v+i+t 
  MMETSP1061-20121228|5719_1 310 LPHHWTVVGA--------------------------------------------------------------------------------------------------------------------------------GPIGCELAQALSRLGASVTIITG 342
                 3333344444................................................................................................................................66666666666666666666664 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0      0.02       2.2       1      40 [.     114     153 ..     114     214 .. 0.85
   2 !    9.6   0.1   0.00086     0.098       4      32 ..     316     344 ..     314     351 .. 0.89
   3 ?   -3.4   0.2       7.8   8.9e+02     268     288 ..     594     614 ..     573     618 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.02
   TIGR01790   1 DliviGgGlAglaiAlela.kpglrvqlieaapklpfnnty 40 
                 D++viGgG Agl  A   +     +v ++e +++l+++ t+
  MMETSP1061-20121228|5719_1 114 DMVVIGGGSAGLTAAKFGSgTLKKDVLILE-EERLGGDCTW 153
                 99*********9877765566666777777.6677777777 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00086
   TIGR01790   4 viGgGlAglaiAlelakpglrvqlieaap 32 
                 v+G+G+ g+ +A++l++ g +v +i ++ 
  MMETSP1061-20121228|5719_1 316 VVGAGPIGCELAQALSRLGASVTIITGSS 344
                 9************************9876 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 7.8
   TIGR01790 268 aaAglvHPatgYsvaralseA 288
                   A  vHP  +Y  a    +A
  MMETSP1061-20121228|5719_1 594 SLAKAVHPYPSYAFALQAMAA 614
                 46889*******988765555 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0      0.01       1.2       1      36 [.     113     147 ..     113     174 .. 0.69
   2 !    9.0   0.1   0.00071     0.081       4      31 ..     315     342 ..     312     348 .. 0.91
   3 ?   -2.6   0.0       2.3   2.6e+02      93     121 ..     351     379 ..     348     388 .. 0.83
   4 ?   -4.1   0.0       6.9   7.8e+02     350     382 ..     452     484 ..     448     488 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.01
   TIGR00136   1 fdviviGaGhaGieaalaaarlgaktllltlnldti 36 
                 +d++viG+G aG+ aa   + +  k  l+ l+ +++
  MMETSP1061-20121228|5719_1 113 YDMVVIGGGSAGLTAAKFGSGTLKKDVLI-LEEERL 147
                 689************98887665444444.444444 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00071
   TIGR00136   4 iviGaGhaGieaalaaarlgaktllltl 31 
                 +v+GaG  G+e a a +rlga ++++t 
  MMETSP1061-20121228|5719_1 315 TVVGAGPIGCELAQALSRLGASVTIITG 342
                 79************************96 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 2.3
   TIGR00136  93 iDkvlYkkavkealenqpnlsllqeeved 121
                 +D ++  +++ke  e+++n++++q++  +
  MMETSP1061-20121228|5719_1 351 ADDEEVSQLLKEVFEQDENIKVVQGKLSK 379
                 6778888999**************98765 PP

  == domain 4    score: -4.1 bits;  conditional E-value: 6.9
   TIGR00136 350 tLetkkikgLflaGqinGttGYeeaaa.qGllaG 382
                 tL+t ++k+++ aG   G   +   a+ qG +a 
  MMETSP1061-20121228|5719_1 452 TLKT-SVKSIYAAGDCTGDKQFTHYAGyQGAVAA 484
                 6665.6999******9999888776554888776 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0     0.002      0.22       2      40 ..     113     151 ..     112     164 .. 0.86
   2 ?    2.1   0.0      0.14        16       4      31 ..     314     341 ..     312     364 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.002
   TIGR00031   2 fdyiivGaGlsGivlae.ilaklnkrvlvvekrnhiGGnc 40 
                 +d++++G G +G   a+     l k vl++e  +++GG+c
  MMETSP1061-20121228|5719_1 113 YDMVVIGGGSAGLTAAKfGSGTLKKDVLILEE-ERLGGDC 151
                 9****************556688999999997.679**99 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.14
   TIGR00031   4 yiivGaGlsGivlaeilaklnkrvlvve 31 
                 + +vGaG  G  la+ l++l+ +v ++ 
  MMETSP1061-20121228|5719_1 314 WTVVGAGPIGCELAQALSRLGASVTIIT 341
                 679*********************9985 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.031       3.6       3      20 ..     113     130 ..     111     153 .. 0.78
   2 ?   -2.7   0.1       3.4   3.9e+02       6      32 ..     315     342 ..     313     345 .. 0.90
   3 ?    7.8   0.1    0.0022      0.25     333     355 ..     444     466 ..     422     481 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.031
   TIGR00551   3 advvviGsGaagLsaala 20 
                  d+vviG+G agL+aa  
  MMETSP1061-20121228|5719_1 113 YDMVVIGGGSAGLTAAKF 130
                 799***********9965 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 3.4
   TIGR00551   6 vviGsGaagLsaalalaekyr.vvvlsk 32 
                 +v+G+G  g  +a al++ +  v++++ 
  MMETSP1061-20121228|5719_1 315 TVVGAGPIGCELAQALSRLGAsVTIITG 342
                 69****************9998999985 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0022
   TIGR00551 333 iGGisvdaygrtevkGLYaiGev 355
                  GGi vd+  +t+vk +Ya+G+ 
  MMETSP1061-20121228|5719_1 444 TGGIAVDKTLKTSVKSIYAAGDC 466
                 6********************85 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.056       6.3       1      33 [.     113     146 ..     113     154 .. 0.72
   2 ?    5.9   0.0      0.01       1.2     148     220 ..     299     370 ..     254     387 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.056
   TIGR04046   1 lpvviiGaGqaGlsvsyllk.kkgvdhvvlekkt 33 
                 +++v+iG+G aGl+ + + +   + d ++le+++
  MMETSP1061-20121228|5719_1 113 YDMVVIGGGSAGLTAAKFGSgTLKKDVLILEEER 146
                 578**********988664414455667777776 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.01
   TIGR04046 148 lhseeyrnaeqlpdGavlvvGsGqsGaqiaedlhlagrkvhlavGsaPrvarryrGrdvvdwledlgyydltv 220
                 + ++++ +  +lp+    vvG+G  G+ +a+ l   g +v + +Gs+ r        +v + l+++   d  +
  MMETSP1061-20121228|5719_1 299 IWTRDFGDDGTLPH-HWTVVGAGPIGCELAQALSRLGASVTIITGSSGRLLPNADDEEVSQLLKEVFEQDENI 370
                 55566666667777.5679****************************99877777777777777666666555 PP

>> TIGR00745  apbA_panE: 2-dehydropantoate 2-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00039     0.045       2      31 ..     314     343 ..     313     369 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00039
   TIGR00745   2 iailGaGAvGsllgakLaragadVtllars 31 
                 ++++GaG +G+ l+  L+r ga Vt+++ s
  MMETSP1061-20121228|5719_1 314 WTVVGAGPIGCELAQALSRLGASVTIITGS 343
                 68************************9865 PP

>> TIGR02964  xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00048     0.055     102     154 ..     313     366 ..     294     376 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00048
   TIGR02964 102 evvlfGaGHvgkalvrvlaklpvrvtlvdsreeel.peelpegvealltdepea 154
                 + ++ GaG +g +l+++l++l  +vt++     +l p+  +e+v++ll++  e+
  MMETSP1061-20121228|5719_1 313 HWTVVGAGPIGCELAQALSRLGASVTIITGSSGRLlPNADDEEVSQLLKEVFEQ 366
                 56799*********************9987766551666669999998886654 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.2    0.0018       0.2       1      37 [.     115     151 ..     115     160 .. 0.72
   2 ?    1.9   0.5      0.22        25       3      27 ..     316     340 ..     314     346 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0018
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRa 37 
                 +vv+GgG AGL+AA   + +  +  l+   ++lGG +
  MMETSP1061-20121228|5719_1 115 MVVIGGGSAGLTAAKFGSGTLKKDVLILEEERLGGDC 151
                 69************76665544434444455677765 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.22
   TIGR03467   3 vvGgGlAGLaAAveLaraGvrvtll 27 
                 vvG+G  G+  A +L+r G+ vt++
  MMETSP1061-20121228|5719_1 316 VVGAGPIGCELAQALSRLGASVTII 340
                 9**********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      216  (0.0526572); expected 82.0 (0.02)
Passed Vit filter:                        76  (0.0185275); expected 4.1 (0.001)
Passed Fwd filter:                        36  (0.00877621); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.88u 0.14s 00:00:01.02 Elapsed: 00:00:00.69
# Mc/sec: 1216.60
//
Query:       MMETSP1061-20121228|5727_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       443  (0.107996); expected 82.0 (0.02)
Passed bias filter:                      206  (0.0502194); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 433.09
//
Query:       MMETSP1061-20121228|5730_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-15   53.5   0.2    6.8e-15   53.0   0.1    1.2  1  TIGR03242 arg_catab_astE: succinylglutamate desuccinylase


Domain annotation for each model (and alignments):
>> TIGR03242  arg_catab_astE: succinylglutamate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.1   1.7e-18   6.8e-15      41     233 ..      30     262 ..      19     285 .. 0.75

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 1.7e-18
   TIGR03242  41 ekslvisaGihGnetaPielleqllsdiaagklqlkvrlLlilGnpaalrkgkRyleedlnRlfgGryqelee.......skeklRaeeLeqvveaffeagkasea.................................ryhyDlhtaiRasklekfallPyqekpfd....kellewlaaadldavllhkekggtfshfssekleaeactlelGkarPfGendlsqfqaitealra 233
                  + + +  G hGne   +  +++l +++a+g+ +    +  ++Gnp a+++++R+++edlnR f+G    ++        s+e++Ra+eL++ +   f+a + +++                                  + +Dlht   + +    +l+  q+ p +    + +++  ++ + +  +l +++++  +    +++  +++ +e+G + P G     +++++++al++
  MMETSP1061-20121228|5730_1  30 IRTVAVVGGTHGNEYTGVFCVKALERQLASGEARYPFEVSTLIGNPEAFKANQRFIDEDLNRQFSGAAIAFARaalpdalSVEQRRARELDALLGPKFAADGGTDTntatatvidtdtdianananansnakanqspamDFIIDLHTTTTNMHT---TLIVGQGDPLTtraaAYVMKQSREKNFKVCILMHTHASQEARPNLASIARHSFSIEIGPV-PQGVLRHDKVEEMQAALNS 262
                 56788999**********************************************************9877753222233389***********998887765555556999***************************99*******8766544...344444444440000445666667788877777777777888899999999999999976.7776555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2266.77
//
Query:       MMETSP1061-20121228|5734_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|5728_1  [L=951]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-08   31.4   0.1      3e-08   30.8   0.0    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0043   13.9   0.0     0.0079   13.0   0.0    1.4  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
  ------ inclusion threshold ------
      0.049   10.8   0.0      0.076   10.1   0.0    1.2  1  TIGR04058 AcACP_reductase: long-chain fatty acyl-ACP reductase (aldehyde-forming)


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.2e-11     3e-08       2      72 ..     260     334 ..     259     340 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 2.2e-11
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGe...evrvlvrk.tsdrrnleeldvEiveGdlkdeaslkkalkGcealfHvA 72 
                 +vlv GatG +G  vvr ll eG    +vrvlvr+  s++ nl +  v  ++Gdl++ +sl+ al+ +++++ vA
  MMETSP1061-20121228|5728_1 260 EVLVVGATGEIGRLVVRRLLLEGRgrfRVRVLVRDlYSQTLNLLGTGVSYCQGDLSNVESLEYALTDVDKIVCVA 334
                 58****************9999854449******9458999****************************999998 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   5.8e-06    0.0079       7      83 ..     261     335 ..     258     345 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.8e-06
   TIGR03589   7 ilitGgtGsfGkkfikklleky.kvkkiiiysrdelkqfelqqkfeedklrffiGdvrdkerleraledvdlvvhaaa 83 
                 +l+ G+tG  G+  +++ll +     ++ +  rd + q     +     + +  Gd+ + e le al dvd +v  a 
  MMETSP1061-20121228|5728_1 261 VLVVGATGEIGRLVVRRLLLEGrGRFRVRVLVRDLYSQTL---NLLGTGVSYCQGDLSNVESLEYALTDVDKIVCVAG 335
                 89*************99865552788********999864...45567899*********************998774 PP

>> TIGR04058  AcACP_reductase: long-chain fatty acyl-ACP reductase (aldehyde-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   5.5e-05     0.076     151     228 ..     254     339 ..     241     349 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.5e-05
   TIGR04058 151 idlkkatvavvGatGdiGsavcrwl.eaktdvkelllvare..kerleelqeelg..rG...kilsleealpeadivvwvaslpkg 228
                 ++    +v vvGatG+iG  v+r l  +  +   + ++ r+   + l+ l + ++  +G   ++ sle al + d +v va  pk 
  MMETSP1061-20121228|5728_1 254 LEPYVPEVLVVGATGEIGRLVVRRLlLEGRGRFRVRVLVRDlySQTLNLLGTGVSycQGdlsNVESLEYALTDVDKIVCVAGAPKP 339
                 555667899**********99986514444554554555542357777776654311442226788999************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       529  (0.128961); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.13s 00:00:00.86 Elapsed: 00:00:00.87
# Mc/sec: 1442.78
//
Query:       MMETSP1061-20121228|5736_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 587.95
//
Query:       MMETSP1061-20121228|5738_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 1044.91
//
Query:       MMETSP1061-20121228|5739_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 2196.30
//
Query:       MMETSP1061-20121228|5742_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 706.14
//
Query:       MMETSP1061-20121228|5744_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|5743_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1900.64
//
Query:       MMETSP1061-20121228|5746_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 834.17
//
Query:       MMETSP1061-20121228|5751_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 655.39
//
Query:       MMETSP1061-20121228|5750_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       307  (0.0748415); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 450.69
//
Query:       MMETSP1061-20121228|5752_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 2129.42
//
Query:       MMETSP1061-20121228|5758_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 371.97
//
Query:       MMETSP1061-20121228|5753_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   15.8   0.0     0.0068   14.6   0.0    1.6  1  TIGR00826 EIIB_glc: PTS system, glucose-like IIB component


Domain annotation for each model (and alignments):
>> TIGR00826  EIIB_glc: PTS system, glucose-like IIB component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.7e-06    0.0068      10      70 ..      61     123 ..      51     133 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.7e-06
   TIGR00826  10 rekadeealealegvkgvdtaagqlqalgG..tgninevdacitrlRvgvkdeskvedevlkk 70 
                 +++ad+ea++ l+  ++ +++  ql +++G      + ++ c+ + R++++d +k   +++k 
  MMETSP1061-20121228|5753_1  61 EAEADQEAASDLDRRQALERVRLQLSVFIGplHRSFKTLNTCMAQYRIAMGDNKKRWLKAIKY 123
                 3449**************************5545799******************98444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 1336.92
//
Query:       MMETSP1061-20121228|5756_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.5    4.1  25.0        8.5    3.2  17.4    1.4  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  17.4    0.0021       8.5     383     515 ..     410     550 ..     366     584 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0021
   TIGR01628 383 rqlsigspvigaanisgrh.qaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgr.....................rnlnnrnrnvlgnmnkkqqnaaskanqanvkaqpqaqsknqmqqvvqdnnlpqkqa 515
                  q + g+ + ++ +++ +  q +++q+ ++q+++qql +q+l+++ + ++l tq+++k+++ +  + ++++++ +++r                     +         l+++ +k++++ +++++       + q+k++m++ ++ ++ ++k+ 
  MMETSP1061-20121228|5756_1 410 TQANFGRWMESSSGPAEVSsQKQERQQQEHQQQQQQLMKQQLQHQHHFQQLLTQQKQKKQQKQKQKSKNKTKSPKPPRrksappatrvpkppsaaaiakE--------KLKEQRRKERQLKKEQKER------EKQEKKEMKERAKREKQKKKEG 550
                 4556666666666644444477777777778888888888889987777777777665555554555555554444442333333323222222211110........1111111111111111111......1333333333333322111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       807  (0.196733); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.68u 0.18s 00:00:00.86 Elapsed: 00:00:00.56
# Mc/sec: 1528.29
//
Query:       MMETSP1061-20121228|5760_1  [L=1060]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1060 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.55
# Mc/sec: 2543.79
//
Query:       MMETSP1061-20121228|5762_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 701.94
//
Query:       MMETSP1061-20121228|5761_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       412  (0.100439); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1107.77
//
Query:       MMETSP1061-20121228|5757_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       456  (0.111165); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 982.97
//
Query:       MMETSP1061-20121228|5763_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-20   70.4   0.0    6.3e-20   69.4   0.0    1.4  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    3.5e-14   50.4   0.0    5.9e-14   49.7   0.0    1.3  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.2e-13   48.8   0.1    1.3e-12   45.5   0.1    2.0  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.3e-13   48.8   0.1    2.2e-06   25.1   0.0    2.3  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    4.8e-13   47.1   0.0    1.6e-12   45.4   0.0    1.8  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
      5e-13   47.0   0.0    1.2e-05   22.9   0.0    2.2  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    7.3e-13   46.2   0.1    9.1e-06   23.1   0.1    2.2  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    7.7e-13   45.4   0.0    1.7e-08   31.0   0.0    2.2  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      1e-11   42.6   0.0    1.5e-06   25.6   0.0    2.3  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      3e-11   41.2   0.1    4.8e-06   24.1   0.0    2.1  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    6.6e-11   39.8   0.0    1.9e-10   38.4   0.0    1.6  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    7.3e-11   40.0   0.0    7.8e-10   36.6   0.0    2.0  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.9e-10   38.0   0.0    4.1e-09   34.2   0.0    2.1  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.1e-09   35.3   0.3      9e-06   22.4   0.0    2.4  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.2e-09   35.0   0.0    0.00017   19.0   0.0    2.2  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.1e-08   32.0   0.0    1.9e-07   27.9   0.0    2.0  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
      2e-08   31.6   0.0    0.00024   18.3   0.0    2.4  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.2e-08   31.9   0.1    2.8e-07   28.3   0.0    2.1  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.6e-08   31.4   0.0    5.2e-05   20.6   0.0    2.2  2  TIGR01978 sufC: FeS assembly ATPase SufC
    2.9e-08   31.3   0.1    0.00039   17.8   0.0    2.5  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.4e-08   30.3   0.0    8.1e-08   29.1   0.0    1.5  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    3.9e-08   29.8   0.0    4.9e-07   26.1   0.0    2.0  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    7.2e-08   30.0   0.0    2.5e-07   28.3   0.0    1.7  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.2e-07   29.6   0.0     0.0023   15.5   0.0    2.3  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.5e-07   28.1   0.0    2.2e-07   27.6   0.0    1.1  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.9e-07   28.9   0.0    0.00045   17.8   0.0    2.2  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.1e-07   28.2   0.1    0.00022   18.3   0.0    2.1  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.2e-07   28.5   0.0    5.4e-07   27.3   0.0    1.6  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.8e-07   25.1   0.0    5.1e-07   24.7   0.0    1.1  1  TIGR01257 rim_protein: rim ABC transporter
    4.3e-07   27.2   1.2     0.0022   15.1   0.0    2.9  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    4.8e-07   26.5   0.0    0.00017   18.0   0.0    2.0  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      5e-07   26.2   0.0    1.9e-05   20.9   0.0    2.0  2  TIGR00958 3a01208: antigen peptide transporter 2
    7.5e-07   25.9   0.0    0.00094   15.7   0.0    2.1  2  TIGR00955 3a01204: pigment precursor permease
    8.9e-07   25.6   0.0    5.3e-05   19.8   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.1e-06   26.1   0.5    0.00084   16.6   0.0    2.8  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.4e-06   25.5   0.1     0.0031   14.5   0.0    2.1  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    4.1e-06   23.8   0.0     0.0063   13.4   0.0    2.2  2  TIGR01288 nodI: nodulation ABC transporter NodI
    4.6e-06   24.1   0.0    1.5e-05   22.4   0.0    1.7  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      5e-06   24.0   0.0    9.8e-06   23.0   0.0    1.6  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      6e-06   22.8   0.0    0.00067   16.0   0.0    2.0  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    9.3e-06   22.2   0.0    0.00032   17.1   0.0    2.1  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.3e-05   21.5   0.1     0.0015   14.7   0.0    2.1  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.3e-05   21.8   6.7    1.8e-05   21.4   0.0    2.3  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.9e-05   22.0   0.0    0.00029   18.1   0.0    2.0  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    9.4e-05   19.6   0.0      0.015   12.4   0.0    2.1  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    9.6e-05   19.8   0.0      0.027   11.8   0.0    2.1  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    0.00046   17.1   0.0     0.0073   13.2   0.0    2.0  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    0.00059   16.2   0.3    0.00092   15.6   0.2    1.2  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      0.001   14.5   0.0      0.006   12.0   0.0    1.8  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
      0.002   14.2   0.2       0.21    7.5   0.0    2.3  2  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
     0.0033   14.3   0.3       0.43    7.3   0.1    2.3  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
     0.0036   13.7   0.0        0.6    6.4   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
     0.0072   13.7   0.0       0.02   12.2   0.0    1.7  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
  ------ inclusion threshold ------
      0.012   13.2   0.0      0.022   12.4   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
      0.036   10.5   0.0        0.5    6.7   0.0    1.9  2  TIGR01192 chvA: glucan exporter ATP-binding protein
       0.04   10.7   0.0       0.16    8.7   0.0    1.8  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   8.7e-22   6.3e-20       2     198 ..       3     203 ..       2     212 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 8.7e-22
   TIGR03864   2 leveglsfaygk...rralddvsltvakgefvaLLGpnGaGkstLfslltr..LyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdevea 198
                 +++++l+fay     ++ + +++ ++++ + ++L+G nGaGkstL+ +lt+   +  ++ e  ++G +  +++++ +a lG  ++++    +      +   a+      +e++++ +++l r+ l    + +++e + G+r++v i+  ll    l ++De ++ LDi sr++  +++ + ++e+g sv++ath++d  +a
  MMETSP1061-20121228|5763_1   3 VNIQNLNFAYDPnsgKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGqiFMGLDSDEFDINGRSTANDQSNGVAFLGGTWKRRRTGFEGVCPYTMDCAASEMMAKWQETHRERRDELVRV-LGINLNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADA 203
                 6789999999752225667789999*************************9434567999****************************999998888888777654444445544444444443.55567899*******************8888889***************************************9876 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   8.1e-16   5.9e-14     322     516 ..       3     197 ..       1     210 [. 0.88

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 8.1e-16
   TIGR02857 322 lelenvsvay.egrk.palkevsltvepgelvalvGaSGaGKstllklllg..fvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHr 516
                 ++++n+++ay +++  + + +++ ++ep +++ lvGa GaGKstll++l g  f+  ++ +  +ng+      a++  + +a+++ + +    t  e +  ++ d +++e+ +  ++++ ++  ++l + l  ++  r ++ S Gqr+++ +   llr+  l ++DE +a LD  + +++ + l + +  +g++v+ ++H 
  MMETSP1061-20121228|5763_1   3 VNIQNLNFAYdPNSGkKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGqiFMGLDSDEFDINGRST----ANDQSNGVAFLGGT-WKRRRTGFEGVCPYTMDCAASEMMAKWQETHRER-RDELVRVLGINLNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECaeRGASVVYATHI 197
                 7899******9888789**********************************55678899********33....3345789****976.6788899999**9999999999999999988755.7888889999*************************************************9987664689999999*96 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.1   1.7e-14   1.3e-12       8     198 ..      20     212 ..      15     219 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 1.7e-14
   TIGR01188   8 AvdgvnlkveegevfglLGPnGAGKtttikmLttll..kPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenl...el...lgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiid 198
                  + g+n ++e ++ + l+G nGAGK+t++++Lt+ +    ds +  ++G           +s gv +   +  +  t+ e +   ++    +e++   +++++er +el+ ++ +    + ++++ s G+r+++ + + l+    +  +DE    LD  +r+   +++++   e g +++ +th +++ad+ a ++a ++
  MMETSP1061-20121228|5763_1  20 NIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQIfmGLDSDEFDINGRSTA-----NDQSNGVAFLGGTWKRRRTGFEGVcpyTMdcaASEMMAKWQETHRERRDELVRVLGIN--LNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAErGASVVYATHIFDQADAWATHIAFMQ 212
                 5678999**************************97611456666666665555.....5555666666666666666666542222311134555555667889999***998886..567899*****************999999*********************9887777*********************9886 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.9e-07   2.9e-05       2      50 ..       3      53 ..       2      77 .. 0.86
   2 !   25.1   0.0     3e-08   2.2e-06     113     219 ..     107     211 ..      99     217 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3.9e-07
   TIGR02315  2 levenlskvy..pngkqalknvnleikkGelvaviGlsGaGkstllrsinr 50
                ++++nl+  y  ++gk+ +  +n  i++   + ++G  GaGkstllr + +
  MMETSP1061-20121228|5763_1  3 VNIQNLNFAYdpNSGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTG 53
                678999999954578999*****************************9864 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 3e-08
   TIGR02315 113 sllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivgl 219
                 +++  ++e+ +e+  el++ +g++   + r+ + s Gq+++v i   l++   l ++DE  a LD  s ++ +++l + + e+g +v+   H  d a ++a++i  +
  MMETSP1061-20121228|5763_1 107 EMMAKWQETHRERRDELVRVLGIN--LNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFM 211
                 567778888888888888888886..567999**********************************************************************99655 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   2.1e-14   1.6e-12      16     186 ..      21     197 ..       9     209 .. 0.72

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 2.1e-14
   TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaG..LlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.............seqktveealekvgLsgl.edlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHl.argGivllathq 186
                 + gl++++ +   ++++G nG+GK+tLLRil+G   +  +s e ++n++++a+ +   ++ +++lg +   K + +  E +  y+ +++             + +    +  e v + g+  +  +++ s Gq++++ +   ll    l ++DE  + lD  + +++ + l++ + +rg +v+ ath+
  MMETSP1061-20121228|5763_1  21 IVGLNCRIEPNSKIILVGANGAGKSTLLRILTGqiFMGLDSDEFDINGRSTANDQ---SNGVAFLGGT--WKRRRTGFEGVCPYTMDCAasemmakwqethrERR----D--ELVRVLGInLNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECaERGASVVYATHI 197
                 568999***************************5556789999999988866555...4778888853..45555555555555444442222211110000333....2..2233333314678999************999********************888877776665167778999**97 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.2e-07   2.4e-05       1      53 [.       2      53 ..       2      73 .. 0.92
   2 !   22.9   0.0   1.6e-07   1.2e-05     116     200 ..     113     196 ..     100     211 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.2e-07
   TIGR02982  1 vikirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligg 53
                v++i++ln  y+ ++ +k+++  +n +iep+  +il G+ G+Gk tll +++g
  MMETSP1061-20121228|5763_1  2 VVNIQNLNFAYDPNSGKKNIV-GLNCRIEPNSKIILVGANGAGKSTLLRILTG 53
                799************999985.89************************98865 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1.6e-07
   TIGR02982 116 keakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvth 200
                 +e++ + ++ l  v l+ +l+ + ++ s+Gq+++v i   l     l + de +a ld  s +   + l k   e+g++++  th
  MMETSP1061-20121228|5763_1 113 QETHRERRDELVRV-LGINLNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATH 196
                 44444444444443.455799999******************999999************************************9 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   1.2e-07   9.1e-06       6      42 ..      19      55 ..      15      79 .. 0.85
   2 !   20.9   0.0   5.9e-07   4.3e-05     109     188 ..     121     199 ..     103     201 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.2e-07
   TIGR01166  6 evlkglnlavergevlallGanGaGkstlllhlnGll 42
                + + gln ++e  +++ l+GanGaGkstll+ l+G++
  MMETSP1061-20121228|5763_1 19 KNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQI 55
                567799****************************975 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 5.9e-07
   TIGR01166 109 realaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrk.lreeGktvvisthdvd 188
                 +e +++++i +l+   +h  s G++k+v i   +     ++++de +a+ld   ++++ + l+k   e G +vv +th  d
  MMETSP1061-20121228|5763_1 121 DELVRVLGI-NLNW-RMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKeCAERGASVVYATHIFD 199
                 444444444.3444.46889**********98876666789*****************99996527899*********665 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.4e-10   1.7e-08     467     516 ..       4      54 ..       2      62 .. 0.94
   2 !   12.0   0.0   0.00013    0.0097     602     660 ..     136     196 ..     125     200 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 2.4e-10
   TIGR03375 467 elknvsfkY.peeekaaLknvslkikpGekvaiiGriGsGKstllklllgl 516
                 +++n++f+Y p++ k+++  ++++i+p +k+ ++G +G+GKstll++l+g+
  MMETSP1061-20121228|5763_1   4 NIQNLNFAYdPNSGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQ 54 
                 789******999************************************996 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00013
   TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtH 660
                 ++ S GQr+ v +   ll+   + ++DE ++ lD  s +++++ L++ +a  +  +v +tH
  MMETSP1061-20121228|5763_1 136 HECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAerGASVVYATH 196
                 5679****************9*************************999945567787888 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   5.4e-05     0.004      15      62 ..      22      71 ..      11      82 .. 0.76
   2 !   25.6   0.0   2.1e-08   1.5e-06     109     193 ..     114     197 ..     103     209 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.4e-05
   TIGR03608 15 kklslkiekGelvaivGesGsGKstlLnilgl..lekkdsgkvilegkek 62
                  l+ +ie  + + +vG  G+GKstlL il+   +   ds ++ ++g+++
  MMETSP1061-20121228|5763_1 22 VGLNCRIEPNSKIILVGANGAGKSTLLRILTGqiFMGLDSDEFDINGRST 71
                46788899999999***************964224566777777777764 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 2.1e-08
   TIGR03608 109 kekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellk.elkeegktiiivtHd 193
                 ++++++  e+++ +g++  l+ +++e s+G++++v ++  ll+++ l + DE  + LD  +r+  +++l+ e +e+g  ++ +tH 
  MMETSP1061-20121228|5763_1 114 ETHRERRDELVRVLGIN--LNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSkECAERGASVVYATHI 197
                 44555556666666665..67899********************************************96267899*********4 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.6e-05    0.0034      17      61 ..      24      70 ..       8      78 .. 0.77
   2 !   24.1   0.0   6.6e-08   4.8e-06     109     203 ..     120     212 ..     109     218 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.6e-05
   TIGR01277 17 fdlsveaGervailGesGaGkstllnliaGflep..asGeikvndkd 61
                ++  +e   ++ ++G  GaGkstll +++G ++    s e  +n+++
  MMETSP1061-20121228|5763_1 24 LNCRIEPNSKIILVGANGAGKSTLLRILTGQIFMglDSDEFDINGRS 70
                66778888999******************966531145666666655 PP

  == domain 2    score: 24.1 bits;  conditional E-value: 6.6e-08
   TIGR01277 109 vedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvve 203
                  +++ r +Gi+  l+   +e s Gqr++v +   l+r+  + ++de  + ld   r+  +  ++k + e+  +++  th  ++a a a+++++++
  MMETSP1061-20121228|5763_1 120 RDELVRVLGIN--LNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFMQ 212
                 55556666664..44445789*************************9999*****************************************9986 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   2.6e-12   1.9e-10      16     208 ..      24     214 ..      15     257 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 2.6e-12
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaG..Ltrpdegeivldge.vlqdsrkkiil...ppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledG 208
                 ++ +++ +  + l G+ G+Gk++l+r+++G   + +d+ e  ++g+ + +d ++++     + ++Rr g  F     ++    ++ +    ++++ e    + ++++++Lgi+  l+ + ++ s G +++v i   lL    L ++De  a LD  +++  + yL +  ae    ++y  H +d     a ++  ++  
  MMETSP1061-20121228|5763_1  24 LNCRIEPNSKIILVGANGAGKSTLLRILTGqiFMGLDSDEFDINGRsTANDQSNGVAFlggTWKRRRTG--FEGVCPYTMDCAASEMMAKWQETHRE----RRDELVRVLGIN--LNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFMQLD 214
                 5677788888999*****************44457899*******834567777775434356777777..77777777766667665555544444....47*********8..7888999****************9999********************************************9999999988754 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.1e-11   7.8e-10      14     198 ..      19     212 ..       3     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.1e-11
   TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltG..llrktsGeilldgrewtrkdlkkiGsl....iesPalyenltare....nlkvrtlllglpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelre.liksfpekGitvilsshilsevelladhiGiis 198
                 + +  ++ +++ ns   l+G nGaGkstll++ltG  ++  +s e  ++gr+ +  + + +  l        + +e +  +       ++ ++ ++ +++r +e++++++++ +   + ++ s G ++++ i i ll+   l ++de +  ld +  + + + l k   e+G +v+ ++hi+ + +  a hi +++
  MMETSP1061-20121228|5763_1  19 KNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGqiFMGLDSDEFDINGRSTANDQSNGVAFLggtwKRRRTGFEGVCPYTmdcaASEMMAKWQETHRERRDELVRVLGINLN--WRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNyLSKECAERGASVVYATHIFDQADAWATHIAFMQ 212
                 3445689999999999*******************4334579999*****9998877777654411112223334444332110112345677788888999999999888765..568899****************99****************9988762567899***********************9987 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   5.6e-11   4.1e-09       1     203 [.       2     204 ..       2     216 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 5.6e-11
   TIGR02673   1 iielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaek..psrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildll.kelnkrGttvivathdeelverv 203
                 ++++++++++y   +g + +  ++ +ie+ + + l+Ga GaGk+tll++l+g+     ++ e  ++g+++a+ +++ +++l          f+ +   t+ +  a  +    k +e+ ++r +e+++++g++       +e s G +++v i   +++   l + De   +lD    +r ++ l ke+ +rG++v+ ath  + +++ 
  MMETSP1061-20121228|5763_1   2 VVNIQNLNFAYDpnSGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQIFmgLDSDEFDINGRSTANDQSNGVAFLGGTWKRRRTGFEGVCPYTM-DCAASEMM--AKWQETHRERRDELVRVLGINLN--WRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLsKECAERGASVVYATHIFDQADAW 204
                 5789999999974456788889999*************************998641268999*****************996665555556776766654.44444443..34445567777899999999754..556799**************9999999******************9882567899*********77666655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.2e-07     9e-06     335     384 ..       3      54 ..       1      80 [. 0.84
   2 !   10.8   0.0   0.00039     0.029     471     528 ..     137     196 ..     107     198 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.2e-07
   TIGR02868 335 lelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallagl 384
                 +++++l+++y+ ++    + g++  +ep +++ +vGa GaGKstLl +l+g 
  MMETSP1061-20121228|5763_1   3 VNIQNLNFAYDPNSGkkNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQ 54 
                 678999999988765457889999**************************95 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00039
   TIGR02868 471 rlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvth 528
                   S G+r+++ +   Ll ++ + ++DE +++LD   +++  + L    ae+g  vv  th
  MMETSP1061-20121228|5763_1 137 ECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSkeCAERGASVVYATH 196
                 6799*****************************************545677777999999 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.3e-06   0.00017       2      53 ..       3      53 ..       2      82 .. 0.81
   2 !   13.9   0.0   8.5e-05    0.0063     131     203 ..     127     199 ..     105     214 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.3e-06
   TIGR02211  2 lkcenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllgg 53
                ++ +nl+  y  ++ + +++ g++ +ie    + +vG+ G+Gkstll +l+g
  MMETSP1061-20121228|5763_1  3 VNIQNLNFAYDPNSGKKNIV-GLNCRIEPNSKIILVGANGAGKSTLLRILTG 53
                56788888898888877765.89***************************98 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 8.5e-05
   TIGR02211 131 lekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdle 203
                 l   +n +  e s G+r++v i   l+    l + de +++ld  + +++f+ l +   e++ +++ +th  +
  MMETSP1061-20121228|5763_1 127 LGINLNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFD 199
                 4456889999*****************99999**************************************655 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   2.6e-09   1.9e-07     338     387 ..       3      52 ..       2      73 .. 0.93
   2 ?    1.9   0.0      0.21        15     475     526 ..     136     187 ..     119     201 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 2.6e-09
   TIGR02204 338 iefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelll 387
                 +++++++fay   + +k + gl+ +++p  ++ lvG  GaGkstll++l 
  MMETSP1061-20121228|5763_1   3 VNIQNLNFAYDPNSGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILT 52 
                 7899*******************************************985 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.21
   TIGR02204 475 vtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgr 526
                  + s Gq++++ i   +l+   + ++de ++ Ld  s ++  + l +  ++r
  MMETSP1061-20121228|5763_1 136 HECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAER 187
                 56799*****************************999887777666666665 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.3e-06   0.00024      19      51 ..      23      55 ..      13      79 .. 0.79
   2 !   10.9   0.0    0.0006     0.044     135     210 ..     135     211 ..     120     217 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.3e-06
   TIGR03873 19 dvdvtaPaGaltgllGPnGsGkstllrllaGll 51
                ++++   + +   l+G nG+Gkstllr+l+G +
  MMETSP1061-20121228|5763_1 23 GLNCRIEPNSKIILVGANGAGKSTLLRILTGQI 55
                56666666666679*****************76 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.0006
   TIGR03873 135 lstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrel.aaegvtvvvalhdlnlaasvcdhvvvl 210
                 ++  s G+r++v++   l +   l ++de +  ld+ ++   ++ +++  a+ g+ vv a h ++ a + + h+  +
  MMETSP1061-20121228|5763_1 135 MHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKEcAERGASVVYATHIFDQADAWATHIAFM 211
                 556799*********9999988999****************99998765157789999**********999998765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   3.8e-09   2.8e-07       5     216 ..       5     212 ..       1     225 [. 0.73

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 3.8e-09
   TIGR03411   5 vedvsvsfd...gfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellke.lak.ersvvvvehDmefvrelaekvtvlh 216
                 +++++ ++d   g k +  l+ ++e+++  +++G+nGaGk+tll ++tG++      +  ++ d+ + ++a+    G++  f   +  ++ t +e +  +  +     + ++a+ +++++er +e+++++g+  + +++  + s Gq++ + i + l++   l ++De +a +    +++  + l++  a+   svv   h  +  ++ a++++ ++
  MMETSP1061-20121228|5763_1   5 IQNLNFAYDpnsGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQIFMG---LDSDEFDINGRSTANDQSNGVA--FLGGTWKRRRTGFEGV--CPYTMDCAASEMMAKWQETHRERRDELVRVLGI--NLNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKeCAErGASVVYATHIFDQADAWATHIAFMQ 212
                 66666666544467889999******************************9554...3333447777777777777775..7777777777777765..333344455667789999999999999998776..567888899***************999999******99998888887776654133313456666676666666666666665 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   7.2e-07   5.2e-05      13      64 ..      18      69 ..       3      83 .. 0.77
   2 !    8.8   0.0    0.0029      0.21     145     202 ..     138     196 ..     107     206 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 7.2e-07
   TIGR01978 13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgq 64
                k+ + gln  +++    +++G+nG+GkstL ++l+g+  + + s e  ++g+
  MMETSP1061-20121228|5763_1 18 KKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQIFMGLDSDEFDINGR 69
                5556799*****************************9877776666666665 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0029
   TIGR01978 145 fsGGekkrneilqlalleP.klaiLDeiDsGlDvDalkivaegvnk.lreeekalliith 202
                  s G +k+  i+ ++ll+P  l+++De  + lD+ +    ++ ++k ++e+  +++  th
  MMETSP1061-20121228|5763_1 138 CSDGQRKKVRIM-IKLLRPfMLCVIDEFAADLDIFSRNRFFNYLSKeCAERGASVVYATH 196
                 4889*****997.7899994569***********99988888886515555777777777 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0    0.0007     0.051      30      59 ..      24      53 ..      10      60 .. 0.86
   2 !   17.8   0.0   5.3e-06   0.00039     125     227 ..     116     214 ..     105     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0007
   TIGR02769 30 vslsleeGetvallGrsGaGkstlarlllG 59
                ++  +e    + l+G  GaGkstl r+l G
  MMETSP1061-20121228|5763_1 24 LNCRIEPNSKIILVGANGAGKSTLLRILTG 53
                566788888999***************988 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 5.3e-06
   TIGR02769 125 erkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeG 227
                 +r +r  el+++++++   l+ + ++ s Gq +++ i   l     l v+de  ++ld+  +   ++ l k  +e G ++++ th +  ++  a +++ ++  
  MMETSP1061-20121228|5763_1 116 HR-ERRDELVRVLGIN---LNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFMQLD 214
                 44.4446777777775...55677899***********999888899*********************************************99999999755 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.1e-09   8.1e-08     357     528 ..      21     196 ..       2     209 .. 0.79

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.1e-09
   TIGR01194 357 lGpidlriasGelvyivGenGcGkstliklllG.lyi.pqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqat.tylsrleledkvkvedlnyst.ttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvish 528
                 +  ++ ri+    + +vG nG Gkstl+++l G +++   + e+ ++G + +++  +    l  +       f+ +     +  as   a+ +  +r   ++ v+v + n      + s Gqrk++ ++   l    + ++de+aad d   +  f++ l  +   rG +++  +h
  MMETSP1061-20121228|5763_1  21 IVGLNCRIEPNSKIILVGANGAGKSTLLRILTGqIFMgLDSDEFDINGRSTANDQSNGVAFLGGTWKRRRTGFEGVCPYTMDCAASEMMAKwQETHRERRDELVRVLGINLNWrMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATH 196
                 44589999999999******************94344247899***********9999999999999999999988776666666666665233444455677999887765317899***************999999**********999999***************999998 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   6.7e-09   4.9e-07     478     527 ..       3      53 ..       2      70 .. 0.92
   2 ?    1.3   0.0      0.22        16     615     669 ..     137     195 ..     127     199 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 6.7e-09
   TIGR03796 478 velrnvtfgysal.eapliedfslslkpGqrvAlvGgsGsGkstiaklvaG 527
                 v+++n++f+y +   ++ i +++ +++p +++ lvG+ G+Gkst+ ++++G
  MMETSP1061-20121228|5763_1   3 VNIQNLNFAYDPNsGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTG 53 
                 899*******98625889*******************************99 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.22
   TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl....rrRgctciiva 669
                   s Gqr+++ i   L +   + ++DE  + LD    ++  + l     +Rg +++  +
  MMETSP1061-20121228|5763_1 137 ECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLskecAERGASVVYAT 195
                 5799*************999999**********98877655544111145666666555 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   3.4e-09   2.5e-07      19     206 ..      24     213 ..      15     225 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 3.4e-09
   TIGR00968  19 vdlevktGslvallGpsGsGkstllrviaG..lekpdsGrilleGrdvtrvkvrdreiGfv...f.qhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlek 206
                 ++  ++  s + l+G  G+Gkstllr+++G  +   ds +  ++Gr +++ +     + f+   + ++ + f+ +          e+  k +++ +++ +el+++++++ l+ r   + s Gqr++v +   l     + ++de  + ld   r+ + ++l k   e   + v+ th  ++a   a +i+ ++ 
  MMETSP1061-20121228|5763_1  24 LNCRIEPNSKIILVGANGAGKSTLLRILTGqiFMGLDSDEFDINGRSTANDQ--SNGVAFLggtWkRRRTGFEGVCPYTMDCAASEMMAKWQETHRERRDELVRVLGIN-LNWR-MHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFMQL 213
                 567788888999*****************9444678999******9877654..444444411131233456655544443444566677778899999****999986.5555.4679*********99988655556678888888*****************************99999999999999975 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00042     0.031       7      31 ..      32      56 ..      26      90 .. 0.76
   2 !   15.5   0.0   3.1e-05    0.0023     106     183 ..     131     208 ..     103     218 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00042
   TIGR03771  7 ellgllGpnGaGkttllrailglik 31
                  + l+G nGaGk+tllr + g i 
  MMETSP1061-20121228|5763_1 32 SKIILVGANGAGKSTLLRILTGQIF 56
                56789*************9988765 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 3.1e-05
   TIGR03771 106 ladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelf.eelagegtailmtthdlaeavatcdrv 183
                 l+ r + e s Gqr++v +   l     l ++de  + ld+ s++++ + + +e a+ g +++ +th + +a a +  +
  MMETSP1061-20121228|5763_1 131 LNWR-MHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLsKECAERGASVVYATHIFDQADAWATHI 208
                 4444.6799**********999966666678999999******999887552789999*********998887766665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0     3e-09   2.2e-07     452     501 ..       3      53 ..       2      56 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 3e-09
   TIGR03797 452 ievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLg 501
                 +++++++F+Y+++ g++ +  ++++iep   + +vGa G+GKStllr+L g
  MMETSP1061-20121228|5763_1   3 VNIQNLNFAYDPNsGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTG 53 
                 789********873578899*****************************87 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   6.2e-06   0.00045       6      52 ..       7      54 ..       2      83 .. 0.79
   2 !    9.0   0.0    0.0032      0.24     137     199 ..     136     199 ..     107     214 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.2e-06
   TIGR00960  6 qvskayk.gaaelaldnvtvkiekGelvflvGhsGaGkstllklilgi 52
                ++  ay   + +  + +++ +ie  + + lvG  GaGkstll++++g 
  MMETSP1061-20121228|5763_1  7 NLNFAYDpNSGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQ 54
                55555631344558899**************************99875 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0032
   TIGR00960 137 vqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilell.eevnraGttvlvathden 199
                  + s G++++v i   +++   l + de +++ld    +  ++ l +e  ++G  v+ ath  +
  MMETSP1061-20121228|5763_1 136 HECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLsKECAERGASVVYATHIFD 199
                 578999999****999998888999*********998888998663789************655 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0043      0.31       6      40 ..      18      52 ..      15      77 .. 0.85
   2 !   18.3   0.0     3e-06   0.00022      98     204 ..     109     212 ..      98     218 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0043
   TIGR01186  6 klgvndvdleieeGeiiviiGlsGsGkstlvrlln 40
                k+ +  ++  ie    i+++G  G+Gkstl+r+l 
  MMETSP1061-20121228|5763_1 18 KKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILT 52
                55566677888888999***************996 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 3e-06
   TIGR01186  98 llkideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilk 204
                 ++k++e + +e+  e+++ +++  ++     +e s G++++v ++  l     l ++de  + ld + r+ + + l k  ++   ++v+ th +d+a   +  i+ ++
  MMETSP1061-20121228|5763_1 109 MAKWQETH-RERRDELVRVLGInLNW---RMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFMQ 212
                 56776655.57778999999993344...469****************998899999999999***********************************9999999998 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   7.4e-09   5.4e-07       4     187 ..      24     210 ..      21     223 .. 0.84

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 7.4e-09
   TIGR01184   4 vdleikkgefislighsgcgkstllnliag..lekptsgavilegkeitepgpdrmvvfqnysllpwltvrenia.lavdavlrdlskserreiveehielvg.lreaadkrpeqlsggmkqrvaiaralsirpkll.lldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvm 187
                 ++ +i+    i l+g  g gkstll +++g  +    s    ++g+   +      v f   +    +t  e +   ++d++ +++  + +++  e + elv  l    + r+++ s g +++v i   l +rp +l ++de    ld ++r+ + + l k + e+ ++v+  th  d+a   +  + +
  MMETSP1061-20121228|5763_1  24 LNCRIEPNSKIILVGANGAGKSTLLRILTGqiFMGLDSDEFDINGRSTANDQ-SNGVAFLGGTWKRRRTGFEGVCpYTMDCAASEMMAKWQETHRERRDELVRvLGINLNWRMHECSDGQRKKVRIMIKL-LRPFMLcVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAF 210
                 67778888999******************954455667789999*9977665.5568899999899999999886478999999999999998888888888625567799***************9998.677666267888888********************************99777776665 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0     7e-09   5.1e-07     927    1133 ..       1     211 [.       1     218 [. 0.74

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 7e-09
   TIGR01257  927 pgvcvknlvkifep.sgrpavdrlnitfyenqitaflghngagktttlsiltgllpp..tsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfy.....aqlkgrsweeaqlemea.mledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrs..grtiimsthhmdeadllgdriaii 1133
                  p v ++nl   ++p sg+  +  ln  +  n    ++g ngagk+t l iltg +     s    + g+    +     qs g++          t  e +  y     a      w+e++ e    ++   g   + n   ++ s g ++k+ + i ++    + v+de ++ +d +sr   ++ l k  +  g +++ +th +d+ad    +ia +
  MMETSP1061-20121228|5763_1    1 PVVNIQNLNFAYDPnSGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQIFMglDSDEFDINGRSTAND-----QSNGVAFLGGTWKRRRTGFEGVCPYtmdcaASEMMAKWQETHRERRDeLVRVLG--INLNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAerGASVVYATHIFDQADAWATHIAFM 211 
                  5688999999999956999**********9*999*******************765411566666666665444.....444444444444444444444443311111444445577777666540444445..5678889999*******************************************9865226689************99999986 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     3e-05    0.0022      18      63 ..      23      70 ..      15      85 .. 0.77
   2 !    8.8   0.0    0.0024      0.18     145     222 ..     136     213 ..     107     226 .. 0.83
   3 ?    0.5   0.0      0.86        63     203     241 ..     323     360 ..     313     362 .] 0.80

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3e-05
   TIGR03005 18 glelevaaGekvaliGpsGsGkstilrilmt..letideGsikvegeq 63
                gl+  +++  k+ l+G  G+Gkst+lril    + ++d  +  ++g +
  MMETSP1061-20121228|5763_1 23 GLNCRIEPNSKIILVGANGAGKSTLLRILTGqiFMGLDSDEFDINGRS 70
                7899999*********************96421455666666666655 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0024
   TIGR03005 145 aqlsGGqkqrvaiaralalrpkvl.lfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdk 222
                  + s Gq+++v i   l lrp +l + de ++ ld    +  +n l + ++e+  +++  th +  a   a  + f++ 
  MMETSP1061-20121228|5763_1 136 HECSDGQRKKVRIMIKL-LRPFMLcVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFMQL 213
                 46799********9998.677554289******************************************9999999865 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.86
   TIGR03005 203 vthemgfarefadrvlffdkGkiveeGkpdeifrkpkee 241
                 +t ++  a+++a+r   f+k ++ e+   +++ +k k+e
  MMETSP1061-20121228|5763_1 323 LTRQLAAAEQVAQREARFEKRRLEEQQ-EQKLEQKQKQE 360
                 5889999*************9998875.45565666665 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.4e-06   0.00017     475     537 ..       4      70 ..       2      78 .. 0.78
   2 !    6.5   0.0    0.0075      0.55     604     654 ..     130     180 ..     114     212 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.4e-06
   TIGR01193 475 evndvsysyG..ygsevledislkikknekitlvGlsGsGkstlakllvk..ffqaesGeillngks 537
                 +++++++ y    g++ +  ++ +i+ n+ki lvG  G+Gkstl ++l +  f   +s e  +ng s
  MMETSP1061-20121228|5763_1   4 NIQNLNFAYDpnSGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGqiFMGLDSDEFDINGRS 70 
                 67888888862256788889999************************98643556677777777665 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0075
   TIGR01193 604 elseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenl 654
                 +l     + s Gq++++ +   ll +  + ++de +++ld+   ++  + l
  MMETSP1061-20121228|5763_1 130 NLNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYL 180
                 5556667889*******************************9999988766 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   2.6e-07   1.9e-05     479     527 ..       3      51 ..       1      54 [. 0.88
   2 ?    3.2   0.0     0.063       4.6     618     687 ..     138     212 ..     130     229 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 2.6e-07
   TIGR00958 479 veFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaall 527
                 v+ q+ +F+Y   + k+ + +L+  +ep + + lVG +G GKSt   +l
  MMETSP1061-20121228|5763_1   3 VNIQNLNFAYDPNSGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRIL 51 
                 8899******6666666677************************98877 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.063
   TIGR00958 618 lsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksr..tvlliahrLstvek.adkilvlk 687
                  s Gq++++ i   L+r  ++ ++De  + LD  + + + +  sk+ ++r  +v+  +h    +   a +i++++
  MMETSP1061-20121228|5763_1 138 CSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNylSKECAERgaSVVYATHIFDQADAwATHIAFMQ 212
                 689**************99999***********444443333555555541166666666655543356666666 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-05   0.00094      54      96 ..      34      75 ..      11      83 .. 0.84
   2 !    8.0   0.0    0.0026      0.19     162     224 ..     133     196 ..     122     202 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.3e-05
   TIGR00955 54 lAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveake 96
                + ++G+ GaGK+TLl +l+ +   gl+   +  +nG+   +++
  MMETSP1061-20121228|5763_1 34 IILVGANGAGKSTLLRILTGQIFMGLDS-DEFDINGRSTANDQ 75
                6689***********************9.559****9887655 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0026
   TIGR00955 162 grvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvL.kklaqkgktviltiH 224
                  r++  S G+rk++ +   ll   +l ++DE  + LD fs +   + L k+ a++g +v+   H
  MMETSP1061-20121228|5763_1 133 WRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLsKECAERGASVVYATH 196
                 577889***************9889999******************995678999999998877 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   7.2e-07   5.3e-05     325     369 ..      12      56 ..       2      72 .. 0.84
   2 ?    3.6   0.0     0.055         4     455     513 ..     138     197 ..     130     214 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 7.2e-07
   TIGR01842 325 vppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwl 369
                   p++ kk + g++ ++++ + + ++G+ g+Gks+L r+l+G + 
  MMETSP1061-20121228|5763_1  12 YDPNSGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQIF 56 
                 46788889999*******************************875 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.055
   TIGR01842 455 LsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalk.elkarkitvvvithr 513
                  s Gqr+++ +   l +  +l v+De  a+LD      + + l  e  +r+++vv  th 
  MMETSP1061-20121228|5763_1 138 CSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSkECAERGASVVYATHI 197
                 699*************9999************9999999998851577788889988885 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.2e-05   0.00084       2      48 ..       3      52 ..       2      78 .. 0.81
   2 ?    6.1   0.0     0.018       1.3     143     218 ..     136     213 ..     119     241 .. 0.79
   3 ?   -0.2   0.1       1.5   1.1e+02     200     232 ..     324     355 ..     322     362 .] 0.76

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.2e-05
   TIGR00972  2 levknlklfygeke...alkdvnleikknkvtaliGpsGcGkstllrsln 48
                ++++nl++ y  ++    +  +n  i+ n+ + l+G  G+Gkstllr l 
  MMETSP1061-20121228|5763_1  3 VNIQNLNFAYDPNSgkkNIVGLNCRIEPNSKIILVGANGAGKSTLLRILT 52
                68999999998655111666779************************985 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.018
   TIGR00972 143 lsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeli.qeLkkk.ytivivthnmqqaarvsdktaffle 218
                  + s Gq++++ i   l     + ++De ++ LD  + ++  + + +e +++   +v  th ++qa   + ++af+  
  MMETSP1061-20121228|5763_1 136 HECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLsKECAERgASVVYATHIFDQADAWATHIAFMQL 213
                 56788999999998888554455689************99877662677777689999*****************954 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 1.5
   TIGR00972 200 thnmqqaarvsdktaffleGelveegeteqife 232
                 t++++ a++v+++ a f + +l e++e  ++ +
  MMETSP1061-20121228|5763_1 324 TRQLAAAEQVAQREARFEKRRLEEQQEQ-KLEQ 355
                 89999************99999887664.3433 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0019      0.14       1      19 [.      36      54 ..      36      78 .. 0.79
   2 !   14.5   0.0   4.2e-05    0.0031      95     176 ..     132     213 ..     104     230 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0019
   TIGR01187  1 lLGpsGsGkttlLrllaGl 19
                l+G+ G+Gk+tlLr+l G 
  MMETSP1061-20121228|5763_1 36 LVGANGAGKSTLLRILTGQ 54
                68***************94 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 4.2e-05
   TIGR01187  95 krkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrk 176
                 + ++++ s Gqr++v +   +     + ++De  + LD   r++  + l +   + G  vv+ th  + a + +  ia ++ 
  MMETSP1061-20121228|5763_1 132 NWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFMQL 213
                 56899*************999987788899***********************************77777778888998875 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0029      0.21      30      54 ..      31      55 ..       9      68 .. 0.81
   2 !   13.4   0.0   8.6e-05    0.0063     130     206 ..     132     209 ..     121     237 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0029
   TIGR01288 30 gecfgllgpngagkstiarlvlgli 54
                   + l+g ngagkst+ r++ g i
  MMETSP1061-20121228|5763_1 31 NSKIILVGANGAGKSTLLRILTGQI 55
                5556799*************99865 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 8.6e-05
   TIGR01288 130 dvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrslla.rgktilltthlmeeaerlcdrlc 206
                 + r+ + s g ++++ +   l+    l ++de ++ ld  +r   ++ l    a rg +++ +th++++a+     + 
  MMETSP1061-20121228|5763_1 132 NWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAeRGASVVYATHIFDQADAWATHIA 209
                 66888999***************99***********************97665549**************98776665 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   2.1e-07   1.5e-05      20     210 ..      23     216 ..       3     236 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2.1e-07
   TIGR03522  20 evsfeaekGeivGflGPnGaGkstlmkiltg..ylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsa.alyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveire.vikeiak.dktvilsthimqevealcdrviiinkGki 210
                  +  ++e+ + + ++G nGaGkstl++iltg  ++  ds    ++g +  ++  +   ++G   +      +      ++  a ++    +++ ++r +el++  G++ +   ++ + s G r++v +   ll    + ++de ++ ld        + + ke a+   +v+++thi  + +a   ++  ++  k 
  MMETSP1061-20121228|5763_1  23 GLNCRIEPNSKIILVGANGAGKSTLLRILTGqiFMGLDSDEFDINGRSTANDQSNGVAFLGGTWKRRRTGFEGVCPYTMDCAAsEMMAKWQETHRERRDELVRVLGINLN--WRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNyLSKECAErGASVVYATHIFDQADAWATHIAFMQLDKT 216
                 56667888888889****************95567789**********99999998889987766665544433333333333144444456778899999999999765..57999***************99999999********976555554415566664146899999999999998888877776665 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.3e-07   9.8e-06       2     157 ..       4     163 ..       3     222 .. 0.62

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.3e-07
   TIGR03410   2 evenlevaYg...esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvp....qGreifpkl...tveenlelglealkkkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDe 157
                 +++nl+ aY+     + + +++ ++e ++ + ++G ng+Gk+tll+ l+g++ +    +  ++ di+  ++ +  ++G+a+        r+ f  +   t+       +++    +++  e+  el  vl   l+ r  + s Gq++++ i   L+    l ++De
  MMETSP1061-20121228|5763_1   4 NIQNLNFAYDpnsGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQIFMG---LDSDEFDINGRSTANDQSNGVAFLGgtwkRRRTGFEGVcpyTMDCAASEMMAKW---QETHRERRDELVRVLGINLNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDE 163
                 6889999997322346788999****************************98653...566777788888888888888886411111222222220002222222222222...333333344444555555555566666666666666666655555555565 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   9.2e-06   0.00067      15      54 ..      19      58 ..       8      78 .. 0.85
   2 ?    4.8   0.0     0.023       1.7     123     214 ..     122     211 ..     103     236 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.2e-06
   TIGR02633 15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphG 54
                k + +++ ++++   + l G nGaGkstl+++l+g   +G
  MMETSP1061-20121228|5763_1 19 KNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQIFMG 58
                67889999*************************9966555 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.023
   TIGR02633 123 ellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilld.iirdlkakgvacvyishkleevkavsdtisvi 214
                 el+r l ++       + +   Gq++ v i   l +   l ++de +a l     + +++ + ++  ++g + vy +h +++ +a + +i+ +
  MMETSP1061-20121228|5763_1 122 ELVRVLGIN---LNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNyLSKECAERGASVVYATHIFDQADAWATHIAFM 211
                 444444443...333467889999******9999999*************988887777725689999*************999998888765 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.4e-06   0.00032     332     380 ..       3      52 ..       2      73 .. 0.86
   2 ?    3.0   0.0     0.085       6.2     470     521 ..     137     188 ..     121     202 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 4.4e-06
   TIGR02203 332 vefrnvtfry.pgddrealdsislkveaGevvalvGrsGsGkstlvnllp 380
                 v+++n++f y p+++++ + +++ ++e+   + lvG  G+Gkstl+++l+
  MMETSP1061-20121228|5763_1   3 VNIQNLNFAYdPNSGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILT 52 
                 67899*****44568999****************************9997 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.085
   TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRt 521
                 + s GqR+++ i   ll+   + ++De  + LD  s  +  + L +   +R 
  MMETSP1061-20121228|5763_1 137 ECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERG 188
                 5699*****************************9888777777766666665 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     2e-05    0.0015     456     503 ..       3      51 ..       2      58 .. 0.90
   2 ?    4.7   0.0     0.022       1.6     593     650 ..     137     196 ..     123     213 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2e-05
   TIGR01846 456 iefenirfrykedsp.evlsnlsldikaGeviGivGpsGsGkstltkll 503
                 ++++n++f y+++s  + +  l+  i++   i +vG  G+Gkstl ++l
  MMETSP1061-20121228|5763_1   3 VNIQNLNFAYDPNSGkKNIVGLNCRIEPNSKIILVGANGAGKSTLLRIL 51 
                 6789********996257999************************9987 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.022
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgr..tviiiah 650
                 + s Gqr+++ +   l+    + ++de ++ ld  s +   + l++ c++r   v+  +h
  MMETSP1061-20121228|5763_1 137 ECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERgaSVVYATH 196
                 5799*************999999***********************99887224555555 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.4e-07   1.8e-05     323     371 ..       3      54 ..       1      73 [. 0.65
   2 ?    4.6   0.0     0.029       2.2     440     514 ..     134     212 ..     123     241 .. 0.64

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.4e-07
   TIGR03719 323 ievenlskafg...dklliddlsfklpkggivGviGpnGaGkstlfklitgk 371
                 ++++nl+ a++    k  i  l++++ +++ + ++G+nGaGkstl++++tg+
  MMETSP1061-20121228|5763_1   3 VNIQNLNFAYDpnsGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTGQ 54 
                 5555555555422234445566777777777777777777777777777765 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.029
   TIGR03719 440 kvgelsGGernrvhlakllkeggnvllldePtndldvetlra....leeallefaGcavvishdrwfldriathilafe 514
                 +++e s G+r +v++   l +   + ++de + dld+   +     l +   e   ++v  +h     d  athi  ++
  MMETSP1061-20121228|5763_1 134 RMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRffnyLSKECAERGASVVYATHIFDQADAWATHIAFMQ 212
                 6677889999999988888888889999999999998654440000333334444444445555555677777775544 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     4e-06   0.00029       4     200 ..      23     212 ..      20     225 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 4e-06
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgre.ialilqnPrsafnPl..ltikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavme 200
                 ++n  +  +  + lvG+ G+Gks+    + g +  +l   s e  ++g++ a+ +  g + ++   +  r+ f+ +  +t+   + e + + ++++++ ++ +v+ l   g++     l+   +e s G  ++v i + ll    l + De ++dlD+ ++ ++ ++l++   +rg ++++ th +      a ++a m+
  MMETSP1061-20121228|5763_1  23 GLNCRIEPNSKIILVGANGAGKSTLLRILTGQIFMGL--DSDEFDINGRSTANDQSNGVAfLGGTWKRRRTGFEGVcpYTMDCAASEMMAKWQETHRERRDELVRVL---GIN-----LNWRMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFMQ 212
                 5677777777788888888888865544444333222..23344445555444444443313455677788888774457888888888777777777777766665...333.....44667999***99999999999988888999***********************************9998888888888887 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0    0.0002     0.015      19      52 ..      20      53 ..       1      78 [. 0.74
   2 ?    5.2   0.0     0.031       2.2     109     209 ..     114     212 ..     105     219 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.0002
   TIGR03265 19 alkdislsvkkgelvclLGPsGCGkttLLriiaG 52
                 +  ++  ++ +  + l+G  G Gk+tLLri++G
  MMETSP1061-20121228|5763_1 20 NIVGLNCRIEPNSKIILVGANGAGKSTLLRILTG 53
                44455778899999******************98 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.031
   TIGR03265 109 eevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmn 209
                 e ++er +el+ ++g++ + + +    s Gq+++v +   l     l ++De  + LD   r+++ + l k   + g   +  th  + a + a +i+ m+
  MMETSP1061-20121228|5763_1 114 ETHRERRDELVRVLGINLNWRMH--ECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFMQ 212
                 45667777777777777766655..5799*******9999988788889************************************9999999999999996 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00037     0.027      28      55 ..      25      52 ..       5      61 .. 0.83
   2 ?    5.9   0.0     0.023       1.7     123     209 ..     114     198 ..     100     214 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00037
   TIGR02324 28 sleveaGelvalsGksGaGkstllksly 55
                + ++e    ++l G+ GaGkstll+ l 
  MMETSP1061-20121228|5763_1 25 NCRIEPNSKIILVGANGAGKSTLLRILT 52
                55677778899**************985 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.023
   TIGR02324 123 eearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvveli.keakargaaligifhde 209
                 e+ r++ +el++ l i +  W +     s G +++v i   l+ +  + ++de  a Ld   r+   + + ke  +rga+++   h+ 
  MMETSP1061-20121228|5763_1 114 ETHRERRDELVRVLGI-NLNWRMH--ECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLsKECAERGASVVYATHIF 198
                 5556667777777888.6668887..789***************998999*********99888777755167788899998877764 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   9.9e-05    0.0073       9      57 ..       3      54 ..       2      71 .. 0.81
   2 ?    1.6   0.0      0.32        24     137     214 ..     136     212 ..     122     229 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 9.9e-05
   TIGR03258  9 vvleslrvaygarvvldd...lsleieaGellallGksGsGkttllravaGf 57
                v +++l+ ay+ +   ++   l   ie+   + l+G  G+Gk+tllr+++G 
  MMETSP1061-20121228|5763_1  3 VNIQNLNFAYDPNSGKKNivgLNCRIEPNSKIILVGANGAGKSTLLRILTGQ 54
                5688888888766654442227899************************995 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.32
   TIGR03258 137 aqlsGGqqqrvalaralvvrpdvl.lldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmk 214
                 ++ s Gq+++v +   l +rp +l ++de  + ld   r+   + l +   e    +v+y th  d+a + a +i +m+
  MMETSP1061-20121228|5763_1 136 HECSDGQRKKVRIMIKL-LRPFMLcVIDEFAADLDIFSRNRFFNYLSKECAER-GASVVYATHIFDQADAWATHIAFMQ 212
                 67789999999988776.57766537899999999999999988887665554.4689*****9999999999999987 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.2   1.3e-05   0.00092     464     501 ..      16      53 ..       2      59 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.3e-05
   TIGR00954 464 egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilge 501
                 +g++ i  L+ +++  ++++++G nG GKs l Ril++
  MMETSP1061-20121228|5763_1  16 SGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILTG 53 
                 67888999***************************976 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   8.2e-05     0.006     761     828 ..       4      69 ..       1      77 [. 0.80
   2 ?    0.2   0.0       0.3        22     905     960 ..     141     196 ..     118     201 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.2e-05
   TIGR00956 761 ewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngr 828
                 ++++l++  + +++k++++  ++  ++P +   L+Ga GAGk tLl +L++ + +G+   ++  +ngr
  MMETSP1061-20121228|5763_1   4 NIQNLNFAYDPNSGKKNIV-GLNCRIEPNSKIILVGANGAGKSTLLRILTGQIFMGLDS-DEFDINGR 69 
                 5678888888888888876.5788899999999*******************9999866.66666665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.3
   TIGR00956 905 eqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkll.rkladaGqailCtiH 960
                  qRk++ i + L  +P +l  +De  + LD  +     + l ++ a+ G +++   H
  MMETSP1061-20121228|5763_1 141 GQRKKVRIMIKLL-RPFMLCVIDEFAADLDIFSRNRFFNYLsKECAERGASVVYATH 196
                 4899999999986.7889999999999999887777766552557788888776655 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0029      0.21     441     461 ..      35      55 ..      10     108 .. 0.83
   2 ?    4.6   0.0     0.022       1.6     627     682 ..     135     203 ..     126     217 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0029
   TIGR00929 441 lIfGptgsGKTvllnfllaql 461
                 +++G++g+GK++ll +l  q+
  MMETSP1061-20121228|5763_1  35 ILVGANGAGKSTLLRILTGQI 55 
                 689*************98775 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.022
   TIGR00929 627 ieealdg............rrfl.iiiDEawkllgdpvfeakikeilktlRKaNgivvlatQsindlle 682
                 + e+ dg            r+f+ ++iDE+ + l+  + +++ + + k + +++++vv at    ++++
  MMETSP1061-20121228|5763_1 135 MHECSDGqrkkvrimikllRPFMlCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADA 203
                 55555555555555555577775278***********************************87777665 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0059      0.43      46      72 ..      27      53 ..      18      58 .. 0.82
   2 ?    4.7   0.0     0.036       2.7     138     239 ..     113     212 ..     104     253 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0059
   TIGR03415 46 dveeGeilvlmGlsGsGkssllravng 72
                ++e    ++l+G  G+Gks+llr + g
  MMETSP1061-20121228|5763_1 27 RIEPNSKIILVGANGAGKSTLLRILTG 53
                566666789**************8765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.036
   TIGR03415 138 kaerrkrveeqlelvgla.eWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaime 239
                 ++  r+r +e ++++g++ +W   +++e s G +++v +   +     + ++de  + ld + r+++ + l +  ++    +v+ +h +d+a    ++ia m+
  MMETSP1061-20121228|5763_1 113 QETHRERRDELVRVLGINlNW---RMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFMQ 212
                 556666777777777765245...68999*******999999999999999***9999*******************************************97 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0082       0.6      20      48 ..      25      53 ..       3      63 .. 0.60
   2 ?    5.4   0.0     0.016       1.2     425     501 ..     135     211 ..     122     245 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0082
   TIGR03269 20 sleleeGevlGilGksGaGksvllhllrG 48
                + ++e    + ++G  GaGks ll++l G
  MMETSP1061-20121228|5763_1 25 NCRIEPNSKIILVGANGAGKSTLLRILTG 53
                55555555555666666666666666655 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.016
   TIGR03269 425 pdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalm 501
                  +e s+G+r++v +   l++   + ++de +  +d  ++++  + + k   e + + v  +h  d        +a+m
  MMETSP1061-20121228|5763_1 135 MHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFDQADAWATHIAFM 211
                 46667777777777777777777777777777777777777777777666666666666666666655555555555 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00027      0.02       3      54 ..       2      58 ..       1      80 [. 0.74
   2 ?   -2.0   0.0       5.8   4.3e+02     141     212 ..     137     212 ..     110     233 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00027
   TIGR02323  3 llevselsksygskkgcr....vsf.lypGevlgivGesGsGkstllkalaarllad 54
                ++++++l   y ++ g +    ++  + p   + +vG  G+Gkstll  l++++   
  MMETSP1061-20121228|5763_1  2 VVNIQNLNFAYDPNSGKKnivgLNCrIEPNSKIILVGANGAGKSTLLRILTGQIFMG 58
                6778888888877666544312444789**********************9987654 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 5.8
   TIGR02323 141 afsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth.lavarllaqrllvmk 212
                 + s G +++++i  +l+    l ++ e +  l +  + r++  l +   e g +v+  th +  a   a  +  m+
  MMETSP1061-20121228|5763_1 137 ECSDGQRKKVRIMIKLLRPFMLCVIdEFAADLdIFSRNRFFnYLSKECAERGASVVYATHiFDQADAWATHIAFMQ 212
                 5567777777777777766666665567777776667777766777777788888888884455666666655555 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0    0.0003     0.022       4      25 ..      32      53 ..      29      62 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.0003
   TIGR00231  4 ikivivGhvdvGKstLlnsllk 25
                 ki +vG  ++GKstLl  l++
  MMETSP1061-20121228|5763_1 32 SKIILVGANGAGKSTLLRILTG 53
                59***************98876 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0    0.0068       0.5     336     382 ..       4      52 ..       2      77 .. 0.78
   2 ?    1.6   0.0      0.23        17     468     511 ..     134     177 ..     102     198 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0068
   TIGR01192 336 efrdisfef..anssqgvrdvsfeakagqtvaivgptgagkttlinllq 382
                 ++++++f +     ++ +  +  ++     + +vg  gagk+tl+ +l 
  MMETSP1061-20121228|5763_1   4 NIQNLNFAYdpNSGKKNIVGLNCRIEPNSKIILVGANGAGKSTLLRILT 52 
                 44555555420455788889999999999***************99884 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.23
   TIGR01192 468 rgnrlsggerqrlaiarailknapilvldeatsaldvetearvk 511
                 r  + s g+r+++ i   +l+   + v+de ++ ld+ +  r  
  MMETSP1061-20121228|5763_1 134 RMHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFF 177
                 5667899*****************************98877765 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0    0.0022      0.16      29     202 ..      30     199 ..       3     218 .. 0.54

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0022
   TIGR02314  29 pkgqifgvigasgagkstlircvnllekptsgavivdgkdlttl.snaelvkarrqigmifqhfnllssrtvfgnva......lplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemd 202
                 p+ +i+ ++ga gagkstl+r +        g++++ g d  ++  n   +++ +  g+ f        rt f+ v          e+ ++ +e  +++ +el+ ++g++        + s gq+++v i   l     + + de ++ ld  + +  ++ l +   + g +++  th +d
  MMETSP1061-20121228|5763_1  30 PNSKII-LVGANGAGKSTLLRILT-------GQIFM-GLDSDEFdINGRSTANDQSNGVAFLGGTWKRRRTGFEGVCpytmdcAASEMMAKWQETHRERRDELVRVLGINLNWR--MHECSDGQRKKVRIMIKLLRPFMLCVIDEFAADLDIFSRNRFFNYLSKECAERGASVVYATHIFD 199
                 555554.68***********9753.......44333.22222220244444555555666666666666666666531111111223333444444555566666666554333..33456666666666666655555555566666666655555555554444445555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                      207  (0.0504632); expected 82.0 (0.02)
Passed Vit filter:                        94  (0.0229157); expected 4.1 (0.001)
Passed Fwd filter:                        56  (0.0136519); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              56  [number of targets reported over threshold]
# CPU time: 0.67u 0.16s 00:00:00.83 Elapsed: 00:00:00.74
# Mc/sec: 645.68
//
Query:       MMETSP1061-20121228|5759_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-44  148.3   0.6    3.9e-44  148.0   0.4    1.1  1  TIGR03627 arch_S9P: archaeal ribosomal protein S9P


Domain annotation for each model (and alignments):
>> TIGR03627  arch_S9P: archaeal ribosomal protein S9P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.0   0.4   9.4e-48   3.9e-44       2     130 .]       7     143 .]       6     143 .] 0.93

  Alignments for each domain:
  == domain 1    score: 148.0 bits;  conditional E-value: 9.4e-48
   TIGR03627   2 vitsgkrktaiaravireGkGrvrinkvpvelieielarlkilePlllae.dvakevDidvkvsGGGimgqaeaartaiarglveft.......gdkelkdaflayDrtllvnDvrrkepkklggkgarakrqksYr 130
                 v++ gk+kta+a a  ++G+G +++n+ p+e ie+e++rlk+ eP+l+++ d  +++Di ++v+GGGi++q  a+r aia+++v+++       + +el++++l yDrtllv+D+rr epkk+gg++ara+ qksYr
  MMETSP1061-20121228|5759_1   7 VQVFGKKKTATAVAFAKQGRGLIKVNGQPIENIEPEIMRLKVYEPVLILGqDKFSNLDIRIRVKGGGITAQIYAIRAAIAKSIVAYHakyvdesSKNELRKTILDYDRTLLVSDPRRCEPKKYGGRSARARFQKSYR 143
                 6788******************************************99998*********************************99733333224589**************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 857.93
//
Query:       MMETSP1061-20121228|5771_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 752.34
//
Query:       MMETSP1061-20121228|5769_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1698.26
//
Query:       MMETSP1061-20121228|5772_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 2016.79
//
Query:       MMETSP1061-20121228|5767_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1150.19
//
Query:       MMETSP1061-20121228|5773_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 670.94
//
Query:       MMETSP1061-20121228|5775_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 315.63
//
Query:       MMETSP1061-20121228|5776_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|5778_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 590.48
//
Query:       MMETSP1061-20121228|5777_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|5774_1  [L=1230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-250  831.3   3.7   6.8e-124  412.5   0.1    4.2  3  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   1.6e-153  510.4  10.5    1.9e-80  268.6   0.2    5.1  4  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   1.3e-116  388.7  13.8    1.8e-66  222.8   0.0    4.4  4  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   4.3e-104  347.1   0.6   2.7e-100  334.5   0.4    3.4  1  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    2.2e-99  331.5   0.3    1.4e-55  186.6   0.1    2.8  2  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    1.4e-95  318.7   1.0    3.5e-58  194.8   0.0    3.9  2  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    5.5e-82  273.5  15.3    1.3e-30  104.1   0.7    6.7  6  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
      9e-81  269.8   3.0    5.7e-45  151.3   0.0    2.9  2  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    6.2e-63  211.3  10.9    2.2e-28   97.3   1.9    3.7  3  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
      5e-53  177.7   0.3    7.5e-33  110.9   0.1    4.1  3  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    2.3e-44  150.0   9.2    8.2e-19   65.7   0.2    5.2  5  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    1.5e-42  143.7  13.6    1.3e-19   68.1   0.4    5.2  4  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    1.4e-34  117.1  13.6    3.1e-20   69.7   0.4    3.3  3  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    5.1e-34  115.0   4.8    4.6e-23   78.7   0.1    4.2  3  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    2.6e-06   25.3   2.0    8.4e-05   20.3   0.2    2.6  3  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
    2.7e-06   25.0   1.7    1.4e-05   22.7   0.8    2.0  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
     0.0011   16.4   0.5      0.002   15.6   0.3    1.4  1  TIGR00338 serB: phosphoserine phosphatase SerB


Domain annotation for each model (and alignments):
>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  412.5   0.1  2.8e-126  6.8e-124       1     455 [.     205     766 ..     205     769 .. 0.77
   2 !  341.1   0.0  1.1e-104  2.8e-102     452     705 ..     797    1072 ..     792    1082 .. 0.89
   3 !   72.3   0.1   2.1e-23   5.1e-21     707     799 .]    1118    1215 ..    1114    1215 .. 0.92

  Alignments for each domain:
  == domain 1    score: 412.5 bits;  conditional E-value: 2.8e-126
   TIGR01116   1 vleqfedllvrilllaavvsfvl...............vaalvePlvillilvlnaivGvwqernaekaiealkeleseealvlrdark......................akdlvpGdivelavGdkvpadvrllel....kslkvdqsiltGesvsvekk..tesvkkekaavqdkknmlfsGtlvvaGkalgvvvrtGvnteiGkirkev....keaeeektPlkkkldefGeklskvialicilvwvinikkfla.............iyyfkiavalavaaiPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkmsvaklvalek.......efkvegttyepvea...kikd....leelakiaalcndsklavdkk.........kvekvGeateaalkvlveklglsaakn....kkslksrealac.....nslik...kkatlefsrdrksmsvlvk...........snklfvkGapeellersthillkg.savPltekakqkilaslkelssealrclalavkeeskl 455
                 + eqfed lvril++ av+s +l                  + eP+vi  +lv+na vGvwq + a ++iealk ++++  +vlr+ ++                      +++lvpGd++ l+ Gdkvpad rl++     +sl vd++ ltGes +vek    e +  ++a vq ++ m+fsGt+vv+G+a+++vv+tG++te G+i++ v    ++++++ktPl ++ld+fG++l+++i++ic+ vw + i k+la             +yy k+aval vaaiPeGlPavit cl+lGtr+ma++n +vr+lPsvetlGc++vicsdktGtlttn+m+v+ lv++ek       e++veg +y+p ++   ++ d    ++ +  +aalcnd++++ +++          +e++Ge+teaal vl+eklg  ++k     +++ + ++  ++      ++ +   ++atlef rdrksmsvl++           +n+l+vkGa++++l+r+th++ ++ s++ ++   ++++  +++++++  lrclalavk+es+l
  MMETSP1061-20121228|5774_1 205 IREQFEDRLVRILVGVAVLSALLeytssggsgavaeslWHRFAEPIVISSLLVINASVGVWQSKSAGNSIEALKAMQPSVCTVLRRRETndddddddddktvateeiadypSANLVPGDLIILKTGDKVPADCRLVRYyqgrRSLTVDETCLTGESIAVEKLlgKEGLALPQAPVQLQTGMVFSGTTVVSGAAVALVVATGSSTEFGRIQSGVleakRDSQDQKTPLAQQLDDFGNQLTGLIGVICVGVWFASIPKMLAkdstvfsspfegmVYYAKVAVALGVAAIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLMEKskkspivEHHVEGVSYSPYGNiegTVADrsslISDVIAVAALCNDARIMGNDHdgkdssnlqDFERTGEPTEAALCVLAEKLGALQSKDlgkdDDQHQDKPNSEVasyhvDQWREkhpRTATLEFHRDRKSMSVLANfngsqngnykaRNRLLVKGAANMVLDRCTHVKYQDgSVAKISGSLRRQLEKKITDMATRPLRCLALAVKDESNL 766
                 579*************999987633222222221111145799*****************************************975431111111111122222222222468*********************98633336999***************733689*******************************************98832224456899****************************997754333333333444458****************************************************************************974445555689******99654111333222225678899*********86654222222222689*****************98877642111222222222222011112232222278**************98533333333333679*****************98751666799999***************************98 PP

  == domain 2    score: 341.1 bits;  conditional E-value: 1.1e-104
   TIGR01116  452 esklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGil...........ssftGkef......e..eleekkalvfsrvePshklklvel..keldqivamtGdGvndaPalkkadiGiamGsGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifltaalgi.ealipvqllWvnlvtdGlPatalgfnppdkdilkkpprkedeplitgwlflrylviGvyvGlatvaaliwykqk 705 
                  es l+++G+vg+kdP r+evad+i+kc +aGirvi+itGd ++ta aia+ + i+           ++f+G+ef      e  e+ +k+ +vf+r++Ps+k+ l+++  ++l++i+amtGdGvndaPal++a iG+amG+Gt+v+kea+d+vladd+f+tiv+aveeGr+iy nm++fi +lis niGe+ +if +++lg+ e l+++ llWvnlvtdG+Patalgfnpp  + +k++pr ++ep++t+wl++ry++ G+yvG+at+ +++ +  +
  MMETSP1061-20121228|5774_1  797 ESGLTLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNIFdkdspadgkslKAFEGQEFflksreEqiEILSKDNIVFCRAQPSDKQALIKMlqNDLGEIAAMTGDGVNDAPALQQAAIGVAMGTGTAVSKEAADMVLADDDFSTIVSAVEEGRTIYANMQAFICFLISCNIGEICAIFFATLLGFpEPLTAMHLLWVNLVTDGPPATALGFNPPSPNSMKEKPRPSNEPIMTKWLLIRYMLTGLYVGVATIGVFAQHYLQ 1072
                  899*************************************************99733333333222589***9955444322244567899**************97325689***************************************************************************************96789**************************************************************999855443 PP

  == domain 3    score: 72.3 bits;  conditional E-value: 2.1e-23
   TIGR01116  707 stlslsvlvviemlnalnalsedssllkippwenkwlvaaiasslalhllily.....vpllsalfgvvplslteWllvlkvslPvilvdevlklvsr 799 
                  +tlsl+ lv +em+ al a+s ++sl+k+ pw nkwl+  +a  + lhl +ly     +p + + fg+v+l  ++W++vl  s P++lvde+lk+++r
  MMETSP1061-20121228|5774_1 1118 QTLSLTTLVCMEMFKALSAVSMNDSLFKVAPWRNKWLLFGVAGPFLLHLSVLYssklgLPGFGEAFGMVSLTKEHWKTVLFWSTPILLVDEILKFIGR 1215
                  59***************************************************43333355789*******************************998 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   1.1   4.1e-61   9.9e-59      20     347 ..     172     557 ..     161     644 .. 0.75
   2 !   27.8   0.0   4.7e-10   1.1e-07     393     489 ..     662     766 ..     658     770 .. 0.85
   3 !  268.6   0.2   7.9e-83   1.9e-80     484     749 ..     795    1070 ..     791    1081 .. 0.91
   4 !   18.2   0.0   3.8e-07   9.2e-05     760     852 ..    1119    1216 ..    1113    1218 .. 0.87

  Alignments for each domain:
  == domain 1    score: 196.7 bits;  conditional E-value: 4.1e-61
   TIGR01522  20 lenGlsssqevsrrrklhGsnelkveeeesllkkflsqfvkdplillllasavvsvll................gniddavsitlailivvtvgfvqeyrsekslealnklvpaechliraGke.........ehvla.........sklvpGdlvelsvGdrvpadlriveavd....lsidesnltGettpvkks......seaiealaersniaymGtlvreGkgkGivvgtGsntefGa....vfemmqeiekpktplqksmdklGkdls.lvsfivigviv.lvGllqGkd.......wle.mf...tisvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtkiytvdkla 347
                 +  Gl+ s+e sr  +++G+ne++     s +    +qf +d+l+ +l++ av+s ll                +++ + + i+  ++i  +vg  q   + +s+eal+ + p+ c ++r  ++         ++++a         ++lvpGdl++l+ Gd+vpad+r+v+  +    l +de+ ltGe+  v+k       + ++  +  ++ + + Gt v +G +  +vv+tGs tefG+    v e  ++ +  ktpl + +d++G +l+ l+ +i +gv    +  ++ kd       + e m+   +++v+l vaaipeGlp ++t+ l+lG  rm++++ ivr+lpsvetlG+v vicsdktGtlt+n+mtv  +  ++k +
  MMETSP1061-20121228|5774_1 172 KAHGLT-SEESSRLLEIYGKNEIEELPPPSWFELIREQF-EDRLVRILVGVAVLSALLeytssggsgavaeslwHRFAEPIVISSLLVINASVGVWQSKSAGNSIEALKAMQPSVCTVLRRRETnddddddddDKTVAteeiadypsANLVPGDLIILKTGDKVPADCRLVRYYQgrrsLTVDETCLTGESIAVEKLlgkeglALPQAPVQLQTGMVFSGTTVVSGAAVALVVATGSSTEFGRiqsgVLEAKRDSQDQKTPLAQQLDDFGNQLTgLIGVICVGVWFaSIPKMLAKDstvfsspF-EgMVyyaKVAVALGVAAIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLMEKSK 557
                 567999.7899999*********9999999888888899.**************99873333222222222222445566667777788889***************************975431122222224566522222333247**********************975333339*************998522222245677788999****************************9333334555677889**************96599999999854257777777633222221.2233333799****************************************************************9998777644 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 4.7e-10
   TIGR01522 393 kfgledlretvkrvaevpfsserkymavkvltd........skkivfvkGateqvleyctsylkkdGkteklteeqkekiqeeaaemaseGlrvlalasktekdl 489
                  + +++ re++ r a + f  +rk m+v    +         ++   vkGa + vl+ ct  + +dG  +k++ + + +++++ ++ma+  lr lala k e++l
  MMETSP1061-20121228|5774_1 662 SYHVDQWREKHPRTATLEFHRDRKSMSVLANFNgsqngnykARNRLLVKGAANMVLDRCTHVKYQDGSVAKISGSLRRQLEKKITDMATRPLRCLALAVKDESNL 766
                 5678999********************97654411111111345678*****************************************************99998 PP

  == domain 3    score: 268.6 bits;  conditional E-value: 7.9e-83
   TIGR01522  484 ktekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavks.skeGekldelddqql........sevvdkva.vfaraspehklkivkalqk.rGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnniknfitfqlstsvaalslvalatvlklenplnamqilwinilmdGppaqslGvepvdkdvlkkpprkrkdkiltkdllkkvlvsaviivvgtllvfvkel 749 
                   +e+ l++ Gl+G++dp rp+v  +++k + +G+rvimitGd+++tav+ia+ + +  k+ + +G+ l++++ q++         e+++k + vf ra p +k  ++k lq+  G++ amtGdGvndapal+ a iGvamG tGt v+keaadm+l+dddf+ti+sa+eeG+ i+ n++ fi f +s  +  ++ +  at+l++++pl am +lw+n++ dGppa +lG +p  ++ +k  pr+ +++i+tk ll + +++ + + v+t+ vf ++ 
  MMETSP1061-20121228|5774_1  795 DIESGLTLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNIFDKDsPADGKSLKAFEGQEFflksreeqIEILSKDNiVFCRAQPSDKQALIKMLQNdLGEIAAMTGDGVNDAPALQQAAIGVAMG-TGTAVSKEAADMVLADDDFSTIVSAVEEGRTIYANMQAFICFLISCNIGEICAIFFATLLGFPEPLTAMHLLWVNLVTDGPPATALGFNPPSPNSMKEKPRPSNEPIMTKWLLIRYMLTGLYVGVATIGVFAQHY 1070
                  57899**************************************************987761578999999887653222221114567665437****************9737***************************.6**********************************************************************************************************************************9864 PP

  == domain 4    score: 18.2 bits;  conditional E-value: 3.8e-07
   TIGR01522  760 tmtftcfvffdmfnalacrsetksvfeiGlfsnkmflyavgasllGqllvvyvpf.....lqkvfqtealsikdllllllisssvlivdeirklferk 852 
                  t+++t +v ++mf al++ s   s+f++    nk +l+ v++ +l  l v+y +      + + f   +l+ +   ++l  s+ +l+vdei k++ r+
  MMETSP1061-20121228|5774_1 1119 TLSLTTLVCMEMFKALSAVSMNDSLFKVAPWRNKWLLFGVAGPFLLHLSVLYSSKlglpgFGEAFGMVSLTKEHWKTVLFWSTPILLVDEILKFIGRR 1216
                  8999************************************************7651111166778888888888889999999********9998775 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   1.7   5.8e-45   1.4e-42      37     395 ..     157     564 ..     128     578 .. 0.73
   2 !   26.1   0.0     2e-09   4.9e-07     434     524 ..     666     765 ..     657     774 .. 0.81
   3 !  222.8   0.0   7.3e-69   1.8e-66     520     767 ..     788    1049 ..     778    1070 .. 0.89
   4 ?   -3.6   0.2         2   4.7e+02     845     879 ..    1179    1213 ..    1119    1214 .. 0.67

  Alignments for each domain:
  == domain 1    score: 143.7 bits;  conditional E-value: 5.8e-45
   TIGR01517  37 klgeaegiakklktdlneGvssselerRekvygknelpekkeksflqlvwealsDktlilLsvaavvslvvgeekeeketgwieGv....a..ilvsvllvvlvtavnDykkelqfreLn..ekkeekkikviR..................ggqeiqisiadvvvGDivslstGdvvpaDgvlisGl....klkiDessltGesdpikk...........gkekL.....lsGtkvlegsgrmlvtavGvnsvtGklltelreageeeplqlkLselasligkfGlgsavllllvlvlryv..iekive.dte...ekaktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvkgyigeeavrnilvea 395
                 +  + e+i ++ +  +++G++s+e  r  ++ygkne+ e ++ s+++l+ e ++D+++ +L+  av s   +++++     + e +    a  i++s llv+  ++v  ++ +    +++  +  +    +v+R                   ++    + a++v GD++ l+tGd vpaD+ l++ +    +l +De  ltGes  ++k           ++++L     +sGt+v++g +  lv+a G +++ G++   + ea+ ++  q + + la+++  fG   + l+ ++ v  ++  i k+ + d++      + ++ +  +av + v a+PegLP  +tl L+ +++++ + n +vR+L + et+G+   iCsDktGtLt+n m+v   ++ e++ ++ +ve 
  MMETSP1061-20121228|5774_1 157 ENSDGETILANSSLVKAHGLTSEESSRLLEIYGKNEIEELPPPSWFELIREQFEDRLVRILVGVAVLSALLEYTSSGGSGAVAESLwhrfAepIVISSLLVIN-ASVGVWQSKSAGNSIEalKAMQPSVCTVLRrretndddddddddktvaTEEIADYPSANLVPGDLIILKTGDKVPADCRLVRYYqgrrSLTVDETCLTGESIAVEKllgkeglalpqAPVQLqtgmvFSGTTVVSGAAVALVVATGSSTEFGRIQSGVLEAKRDS--QDQKTPLAQQLDDFGNQLTGLIGVICVGVWFasIPKMLAkDSTvfsSPFEGMVYYAKVAVALGVAAIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLMEKSKKSPIVEH 564
                 45566788888889999***************************************************99999987766555554222223449999999876.45667776666555552222333344555533433332221000000022333344566899****************999754222379***********8877633222222221223433333379*************************98888666665..55567899999999987776665555544431123333303330003345578888899*****************************************************************9999999988877765 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 2e-09
   TIGR01517 434 kekrkeekvvkiypfeserkkmsvvvk....hsegl....RlfikGaseivlkkcekkldsngeakeisek.kdevedeienlasealRtislaykdelp 524
                 ++ r+++   ++  f+ +rk+msv+ +    +++++    Rl +kGa+++vl +c+++  ++g + +is + + ++e++i ++a++ lR ++la kde +
  MMETSP1061-20121228|5774_1 666 DQWREKHPRTATLEFHRDRKSMSVLANfngsQNGNYkarnRLLVKGAANMVLDRCTHVKYQDGSVAKISGSlRRQLEKKITDMATRPLRCLALAVKDESN 765
                 55566666789999***********862222223333333899*************************987367899********************976 PP

  == domain 3    score: 222.8 bits;  conditional E-value: 7.3e-69
   TIGR01517  520 kdelpekdspnkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltage.......lalegkef......rkdkilpklr.vlaRssPlDkqlLvel..kklgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvnvvavilafvgalisstspLtavqlLWvnlimDtLaaLaLateePteelldRkPigrkaplisrsmwk 767 
                  kd+ + kd + +gl+l+++vGikdP r++v ++++kc  aGi v m+tGD  +ta+aia++ +i  ++         a eg+ef       +++il k + v+ R++P Dkq L+++  ++lge+ a+tGDG nDaPaL++a +G+amg + t v+kea+D++l dD+f++iv av  GR++y +++ f+ f +  n+  +   f ++l+    pLta+ lLWvnl+ D   a aL  ++P+++ ++ kP++ + p++++ ++ 
  MMETSP1061-20121228|5774_1  788 KDPSKYKDIE-SGLTLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNIFDKDSpadgkslKAFEGQEFflksreEQIEILSKDNiVFCRAQPSDKQALIKMlqNDLGEIAAMTGDGVNDAPALQQAAIGVAMGTG-TAVSKEAADMVLADDDFSTIVSAVEEGRTIYANMQAFICFLISCNIGEICAIFFATLLGFPEPLTAMHLLWVNLVTDGPPATALGFNPPSPNSMKEKPRPSNEPIMTKWLLI 1049
                  6777777877.9****************************************************987642222222689****977663335678987543889***********9844579***************************86.*********************************************************************************************************9987654 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 2
   TIGR01517  845 gGaalsvvslsieqWllcvllgalslilgvllrli 879 
                   G+a+ +vsl++e+W + ++ ++  l++  +l+ i
  MMETSP1061-20121228|5774_1 1179 FGEAFGMVSLTKEHWKTVLFWSTPILLVDEILKFI 1213
                  37889999*******99999999999888888765 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  334.5   0.4  1.1e-102  2.7e-100      34     985 ..     173    1216 ..     162    1222 .. 0.75

  Alignments for each domain:
  == domain 1    score: 334.5 bits;  conditional E-value: 1.1e-102
   TIGR01106   34 skglsearaaellardgpnaltppkttpeyvkfarqlfgg..lslllwigailcflaygiqaaeeeepse..dnlylgvvlsavvivtgvfsyyqeaksskilesfknlvpqqalvir..........dgeklsinaee........vvvgdlvevkggdripadlriisa....kglkvdnssltgesepqtr....spefthenpletrn.iaffstncvegtargivvstgdrtvlgrias..las..glesgktpiaieiehfidiitgv..avflgvsffilslile..ytf....leavifl....igiivanvpegllatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmtvahlwfdnqiheadttedq.sgvsf...........dkssetwkalsriatlcnravfkag....qenvpvlkravagdasesall.........kf...............ielalgsvkelrerykkvveipfnstnkyqlsihekedas....epryllvmkgaperilercssili.kgkeqpldeelkeafqnaylelgglgervlgfc.....hlylpeeqypegfkfdvddvnf...p......venlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiisegnetvediaarlnipveqvnkrdakacvvhgsdlkdltseqldeilkehteivfartspqqkliivegcqr.qgaivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnipeitpflifiivniplplgtvtilcidlgtdlvpaislayekaesdimkrkprnpkkdklvnerlislaygqigliqalagfltyfvilaengflpskllglrvewddkavndledsygqewtyeq.......rkiveftchtaffvsivvvqiadliirktrrnsvfqqg.lknkililglveevalaaflsyc.....pgmevalrllplkltwwlvalpysllifvydevrkliirr 985 
                  ++gl+++ +++ll+  g n +   +  p +  ++r+ f    + +l+ ++ +  +l y+    ++  +++  + +   +v+s ++++    + +q   + + +e++k + p   +v+r          d + +++ +ee        +v gdl+ +k+gd++pad r++      + l vd++ ltges    +          ++p++ +  ++f  t++v g+a  +vv+tg  t +gri s  l +    + +ktp+a +++ f + +tg+   + +gv f  +  +l    t+    +e ++++    +++ va +pegl a +t+cl+l ++r+a++n +v+nl +vetlg  svicsdktgtlt n mtv  l + ++  ++   e++  gvs+           d+ss     +  +a+lcn a + ++    +++ +++  + +g+ +e+al          +                +e+a  +v + re++++ + + f    k    + + + ++    ++r  l++kga + +l+rc+ +   +g    +  +l+  +++   ++     r l ++     +l  +  ++      dv +  +   p       ++l++vgl+ + dp r  v d+++kc  agi+vim+tgd   ta aiak v i  +++ +               + ++ ka   +g+++   + e+  eil +  +ivf r+ p +k  +++  q  +g i a+tgdgvnd+pal++a igvamg +g+ vsk+aadm+l dd+f++iv+ veegr i+ n++  i++ ++ ni ei+  +   +++ p pl ++ +l ++l td  pa +l ++    + mk kpr +++  +    l  + y+  gl   +a++ ++   + ++g   ++l    ++w +    d +   g  w  +        r+  +   +t  ++++v +++   + + +   s+f+    +nk l++g+     l   + y+     pg ++a+ ++ l  ++w + l +s  i++ de+ k+i rr
  MMETSP1061-20121228|5774_1  173 AHGLTSEESSRLLEIYGKNEIEELP-PPSWFELIREQFEDrlVRILVGVAVLSALLEYTSSGGSGAVAESlwHRFAEPIVISSLLVINASVGVWQSKSAGNSIEALKAMQPSVCTVLRrretndddddDDDDKTVATEEiadypsanLVPGDLIILKTGDKVPADCRLVRYyqgrRSLTVDETCLTGESIAVEKllgkEGLALPQAPVQLQTgMVFSGTTVVSGAAVALVVATGSSTEFGRIQSgvLEAkrDSQDQKTPLAQQLDDFGNQLTGLigVICVGVWFASIPKMLAkdSTVfsspFEGMVYYakvaVALGVAAIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLMEKSKKSPIVEHHvEGVSYspygniegtvaDRSSL-ISDVIAVAALCNDARIMGNdhdgKDSSNLQDFERTGEPTEAALCvlaeklgalQSkdlgkdddqhqdkpnSEVASYHVDQWREKHPRTATLEFHRDRKSMSVLANFNGSQngnyKARNRLLVKGAANMVLDRCTHVKYqDGSVAKISGSLRRQLEKKITDMATRPLRCLALAvkdesNLQPSLRNFQPRSDNDVRKHPLlkdPskykdiESGLTLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNIFDKDSPA---------------DGKSLKA--FEGQEFFLKSREEQIEILSK-DNIVFCRAQPSDKQALIKMLQNdLGEIAAMTGDGVNDAPALQQAAIGVAMG-TGTAVSKEAADMVLADDDFSTIVSAVEEGRTIYANMQAFICFLISCNIGEICAIFFATLLGFPEPLTAMHLLWVNLVTDGPPATALGFNPPSPNSMKEKPRPSNEPIMTKWLL--IRYMLTGLYVGVATIGVFAQHYLQQGISLKQL----SNWSNC-GTDWTPVGGTSWLTSTnacsdlfREAGRTLPQTLSLTTLVCMEMFKALSAVSMNDSLFKVApWRNKWLLFGVAGPFLLHLSVLYSsklglPGFGEAFGMVSLTKEHWKTVLFWSTPILLVDEILKFIGRR 1216
                  579****************987433.47888888887765225677777777788899877666654443115666789**************************************955555443332334556655422222222799******************97422225688**********876552211333456899998862555568999********************873333311345689****************9444788999988865554113332223688999833224455789***********************************************************99988887777777652344441112211111144443.45566799******987652221567788888999*****99852222112111111222222222222246667778899************99888544333333332111146788999************996516888888888888887777776666666655531111144444455555444444332221111111122579***************************************************9877643...............3455565..57888777778888899975.78***********99999998647***************************.6999*************************************************************************************************877665554444..56777888888887777777777888765555....456543.3455666666665443111112245555567888899999999999999999*******999**********9988887777775444458999********************************9887 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.6   0.1   5.8e-58   1.4e-55       1     317 [.     175     559 ..     175     573 .. 0.83
   2 !  141.4   0.0   2.8e-44   6.8e-42     378     641 ..     703    1017 ..     651    1073 .. 0.84

  Alignments for each domain:
  == domain 1    score: 186.6 bits;  conditional E-value: 5.8e-58
   TIGR01647   1 GLsseeakkrlkkyGpneleekkeskllkFls.flwnPlswvleiAaiiaialen................weDfviilallllnatigfieeskAgnaveaLkkslapkakvlR............dg......kwqeleakelvpGDvvalklGdivpaDvklvegdk....lkvDqaaltGEslpvekklgd...............iaysgsvvkkGEveavvvatGvntffGkaakLveeae....kesghlqkilskigavlivlilvlvliellvellkrkeslres...........lqfalvllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideelivkeeldke 317
                 GL+see++++l++yG+ne+ee    ++ + ++ ++ + l  +l   a+++++le                 +++ ++i  ll++na++g ++ ++Agn +eaLk+   + ++vlR            d       +  + ++++lvpGD++ lk+Gd vpaD++lv   +    l+vD++ ltGEs++vek lg+               +++sg +v  G + a+vvatG +t fG+  + v ea+    ++ + l + l   g+ l+ li v+++ ++++++ k+  +  ++            + a++l va+iP +lp+v++  l +G++++a++++iv+ l ++E l  v ++CsDktGtlt+n++++++ + +++  +k 
  MMETSP1061-20121228|5774_1 175 GLTSEESSRLLEIYGKNEIEELPPPSWFELIReQFEDRLVRILVGVAVLSALLEYtssggsgavaeslwhrFAEPIVISSLLVINASVGVWQSKSAGNSIEALKAMQPSVCTVLRrretndddddddDDktvateEIADYPSANLVPGDLIILKTGDKVPADCRLVRYYQgrrsLTVDETCLTGESIAVEKLLGKeglalpqapvqlqtgMVFSGTTVVSGAAVALVVATGSSTEFGRIQSGVLEAKrdsqDQKTPLAQQLDDFGNQLTGLIGVICVGVWFASIPKMLAKDSTVfsspfegmvyyAKVAVALGVAAIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLMEK-SKKS 559
                 9**************************999853799999999999********9999***********555566689***************************9999999**98666666554332112222224567799***********************987777778*****************887533333333333333479**************************99888666511113456688889999*9999999999998888877765444333355689999888899999**************************************************************99988887.4444 PP

  == domain 2    score: 141.4 bits;  conditional E-value: 2.8e-44
   TIGR01647  378 gkkfkvtkGapqvildlvkekkeieee...........veekveelAerGlRaLgvava.................................dekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglgtniltae..kllkkkkedklkse...eleelvekad.GFAevfPeHkyeivealqkr.ghlvgmtGDGvnDaPaLkkAdvGiAvagAtDAArsaaDivltepGlsviveAikesRkiFqRmksyviYrvaltl.rivvflallililkfklpvllvvllallnDgti 641 
                   ++  ++kGa++++ld +++ k  + +           +e+k++++A r lR+L++av+                                 d +   +l+gl+ + DP r++ +++i+++++ g++v m+tGD+   a  +a+ +++ ++  +a+  +l+  + ++    +   e  e++ k +  F    P  k  ++++lq+  g + +mtGDGvnDaPaL++A +G+A+   t   + aaD+vl +  +s+iv+A+ e R i++ m++++++ +++ +  i+  ++ + l +   l+++ ++ + l+ Dg+ 
  MMETSP1061-20121228|5774_1  703 ARNRLLVKGAANMVLDRCTHVKYQDGSvakisgslrrqLEKKITDMATRPLRCLALAVKdesnlqpslrnfqprsdndvrkhpllkdpskykDIESGLTLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNIFDKDSPADgkSLKAFEGQE-FFLKsreEQIEILSKDNiVFCRAQPSDKQALIKMLQNDlGEIAAMTGDGVNDAPALQQAAIGVAMGTGTAVSKEAADMVLADDDFSTIVSAVEEGRTIYANMQAFICFLISCNIgEICAIFFATLLGFPEPLTAMHLLWVNLVTDGPP 1017
                  4456689**********998776665567789999999********************9****************************99998778899*************************************************98877766521555544443.333313333333333333699999************7539999**********************************************************************956888888888889999************99974 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.3   0.7   7.6e-37   1.8e-34      24     373 ..     173     549 ..     158     559 .. 0.73
   2 !  194.8   0.0   1.4e-60   3.5e-58     431     918 ..     589    1151 ..     576    1159 .. 0.73

  Alignments for each domain:
  == domain 1    score: 116.3 bits;  conditional E-value: 7.6e-37
   TIGR01523  24 tegltqeeavnrlkevgenrleddskvdakkvllrqvlnamivvl....llaailsfat............tdwieggvisavivlnvlvglvqeykaektmdslktlaspnahvirsskse..........aid........skdlvpgdvvllkvgdvvpadlrlve....tknfetdealltgeslpvikdanlvfqkeeevsvgdrlnlaysssivvkgrakgiviktalqseigkiakslrqdsklisrepskrrklnkyiltkkvvqavlglnvgtplqrklsklavllfciavllaiiv....maaqkfdvdkevaiyaislalsiipeslvvvlsitmavgakvmvkrrvivrklealealgavtdicsdktgtltqgkmlarr 373
                 ++glt ee  + l+ +g+n +e+    +  +++ +q  + ++ +l    +l+a+l ++             + + e  vis ++v+n  vg+ q   a  ++++lk++      v+r   ++          ++         s +lvpgd+++lk+gd vpad rlv      + +  de+ ltges+ v k          +++v  +  + +s + vv g a  +v++t+  +e g+i  ++ +  +  s++ +    ++     +++++ +  + vg               + a +  ++     + +  f+     a  a++l+++ ipe l +v+++ +++g++ m++r+vivr l ++e+lg+v+ icsdktgtlt   m  + 
  MMETSP1061-20121228|5774_1 173 AHGLTSEESSRLLEIYGKNEIEELPPPSWFELIREQFEDRLVRILvgvaVLSALLEYTSsggsgavaeslwHRFAEPIVISSLLVINASVGVWQSKSAGNSIEALKAMQPSVCTVLRRRETNdddddddddkTVAteeiadypSANLVPGDLIILKTGDKVPADCRLVRyyqgRRSLTVDETCLTGESIAVEKLLGKEGLALPQAPVQLQTGMVFSGTTVVSGAAVALVVATGSSTEFGRIQSGVLEAKR-DSQDQKTPLAQQLDDFGNQLTGLIGVICVGV--------------WFASIPKMLAkdstVFSSPFEGMVYYAKVAVALGVAAIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKS 549
                 579********************9999999999999776665544111167777765431112222222224456788*******************************99999998654421111112222111112223447899*********************83322467999**************988887788899************************************988754322.1222211111111111233333333333333..............33333333330000335566666666777999*********************************************************9998765 PP

  == domain 2    score: 194.8 bits;  conditional E-value: 1.4e-60
   TIGR01523  431 ikllktaalanlatvfkddetd.......ewkvkgepteialqvfakkl......dlgkkd...llksnefvaeypfds...............evkrmavv..yedqqnetyt....vyakgaverilercsssy...gs..tleepdveliikqveslaaeglrvlalask.......v...id.kddvnit........lnrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptnlisdrdeivdsmvmtgsqfdals.eeevddlkvlplviarcapqtkvkmiealhrr.kkfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfvlqllvenvaevlllvvglvfrdevgksvfplspvevlwiivvtssfpamglglekaapdlmerlphdskvgiftkelivdtlvygiiltvvslasfvvil..yginsgrlsy..dcdaty...........nascrdvykarsavf....avvtf.ci.lilavevkdldrslfrlhpdte 918 
                   +++  aal+n a ++ +d+ +        +   gepte al v+a+kl      dlgk+d     k n  va y  d                + k m+v+  ++  qn  y+    +  kga + +l+rc+  +   gs   +  + +  + k++  +a+  lr lala k       +   ++ ++d+ +         ++ +  es l +++lvgi dp r e + +++k+  agirv m+tgd  +ta aia++v i+  +      +  +   + g +f   s ee+++ l    +v  r  p  k  +i+ l     ++ amtgdgvnd+p+l+qa +g+amg  g+ v+kea+d+vl+dd+f++i+ aveegr ++ n+q f+  l+  n++e+  +          g    pl+ + +lw+++vt   pa  lg++  +p+ m+  p  s+  i+tk l++  +  g++++v+++  f+      gi+  +ls   +c + +             +c d+++    ++    +  t  c+ +  a+  + ++ slf++ p+ +
  MMETSP1061-20121228|5774_1  589 SDVIAVAALCNDARIMGNDHDGkdssnlqDFERTGEPTEAALCVLAEKLgalqskDLGKDDdqhQDKPNSEVASYHVDQwrekhprtatlefhrDRKSMSVLanFNGSQNGNYKarnrLLVKGAANMVLDRCTHVKyqdGSvaKISGSLRRQLEKKITDMATRPLRCLALAVKdesnlqpSlrnFQpRSDNDVRkhpllkdpSKYKDIESGLTLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNIFDKD---SPADGKSLKAFEGQEFFLKSrEEQIEILSKDNIVFCRAQPSDKQALIKMLQNDlGEIAAMTGDGVNDAPALQQAAIGVAMGT-GTAVSKEAADMVLADDDFSTIVSAVEEGRTIYANMQAFICFLISCNIGEICAIFFAT----LLG-FPEPLTAMHLLWVNLVTDGPPATALGFNPPSPNSMKEKPRPSNEPIMTKWLLIRYMLTGLYVGVATIGVFAQHYlqQGISLKQLSNwsNCGTDWtpvggtswltsTNACSDLFREAGRTLpqtlSLTTLvCMeMFKALSAVSMNDSLFKVAPWRN 1151
                  5667778888888776544332111111157788999999999999997655666789876222346688887776553222222222111111557899873344556666752233678***********9753222552246677789999*****************99333222211112122222211111111113445679*****************************************************9993...3344456667889998877725668999999*******************976268999**********************6.999**********************************************76543332....222.2349***************************************************************999875412699999998633565443111111122224689****9754433111133332133145689999**********9976 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0     1e-11   2.5e-09      37      93 ..     304     365 ..     251     368 .. 0.65
   2 !   79.9   0.3   1.1e-25   2.8e-23     124     246 ..     427     563 ..     402     572 .. 0.77
   3 ?    1.6   0.0     0.066        16     257     295 ..     676     724 ..     664     732 .. 0.68
   4 ?    0.9   0.0      0.11        26     277     316 ..     723     763 ..     714     766 .. 0.81
   5 !   52.6   0.0   2.2e-17   5.3e-15     316     372 ..     801     857 ..     791     862 .. 0.93
   6 !  104.1   0.7   5.6e-33   1.3e-30     365     466 ..     888     995 ..     879    1006 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 1e-11
   TIGR01494  37 vtvlregekeisskdlvvGDivlvkkgekvpaDgvlls.....gsaevdessLtGEsnpvek 93 
                  tv +e+ +  +s +lv+GD++++k+g+kvpaD++l++      s+ vde+ LtGEs  vek
  MMETSP1061-20121228|5774_1 304 KTVATEEIADYPSANLVPGDLIILKTGDKVPADCRLVRyyqgrRSLTVDETCLTGESIAVEK 365
                 233334455667889*********************9633333589************9998 PP

  == domain 2    score: 79.9 bits;  conditional E-value: 1.1e-25
   TIGR01494 124 ektplqrkldklalifllallllallvfllvlie............lktflkiilralillviaiPiaLpvavtialavgdkrla...ilvrslnaleelgkvdvilsDKTGTLTenkmelkkvviggeyqsgspdek 246
                 +ktpl ++ld ++  ++ ++ ++++ v+++++ +            + ++++++ +a++l v+aiP++Lp+++t++l++g++r+a   ++vr+l ++e+lg+v+vi+sDKTGTLT+n+m++k +v+ ++  ++sp+  
  MMETSP1061-20121228|5774_1 427 QKTPLAQQLDDFGNQLTGLIGVICVGVWFASIPKmlakdstvfsspFEGMVYYAKVAVALGVAAIPEGLPAVITLCLSLGTRRMAqrnVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLMEK-SKKSPIVE 563
                 5666666666666666666666666666655544111111111111567899999*****************************87779************************************9885.66666654 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.066
   TIGR01494 257 kvlefeserkrmsvivkkpkgk..........yvkGapevilervkkle 295
                  +lef+++rk+msv+++ + ++          +vkGa +++l+r+++++
  MMETSP1061-20121228|5774_1 676 ATLEFHRDRKSMSVLANFNGSQngnykarnrlLVKGAANMVLDRCTHVK 724
                 6789999999999987653221111222222278999999999999876 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.11
   TIGR01494 277 gkyvkGapevilerv.kkleekleelaseglrtlavaskee 316
                  ky +G++  i+  +  +le+k++++a++ lr+la+a k+e
  MMETSP1061-20121228|5774_1 723 VKYQDGSVAKISGSLrRQLEKKITDMATRPLRCLALAVKDE 763
                 46788888777665525799*****************9987 PP

  == domain 5    score: 52.6 bits;  conditional E-value: 2.2e-17
   TIGR01494 316 ellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglfarvsPe 372
                 +l+Gl++++dp r++v+++i+++ +agi+vim+TGD + tA+aiak +++f + sP 
  MMETSP1061-20121228|5774_1 801 TLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNIFDKDSPA 857
                 79************************************************9887776 PP

  == domain 6    score: 104.1 bits;  conditional E-value: 5.6e-33
   TIGR01494 365 lfarvsPeqKaeivellkkk.gevvamiGDGvNDapALkaAdVGiais.....AkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsvl 466
                 +f+r +P++K++++++l++  ge+ am+GDGvNDapAL++A +G+a++     +k+aad+vl+dd++s++v++++eGr++y +++++i++l++ n+ +i  ++++++l
  MMETSP1061-20121228|5774_1 888 VFCRAQPSDKQALIKMLQNDlGEIAAMTGDGVNDAPALQQAAIGVAMGtgtavSKEAADMVLADDDFSTIVSAVEEGRTIYANMQAFICFLISCNIGEICAIFFATLL 995
                 79****************86599************************94444459********************************************999987664 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.3   0.0   2.3e-47   5.7e-45      21     358 ..     162     551 ..     147     571 .. 0.76
   2 !  116.6   0.5   7.2e-37   1.7e-34     408     708 ..     674    1015 ..     657    1053 .. 0.77

  Alignments for each domain:
  == domain 1    score: 151.3 bits;  conditional E-value: 2.3e-47
   TIGR01524  21 etl.lrkldsheeGltaaevterlkkyGenevaeekkspalvqllrafnnpfiyvlailagvsylt................edleavviialmvslsgllrfvqearaeraadalkkmvkntatvlrvineniea.........aleev...pidelvpGdviklaaGdlipadvrvia....ardlliaqsaltGeslpvekvaatkea.kdkellelen.lllmGtnvvsGraqavvlatGsstffGslakavsedreq.....tafdkGvksvskllirfm...lv.....mvpvvllinGlskGdwleaalfa..lavavGl..tpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivlekhl 358
                 et+ ++   ++ +Glt +e ++ l+ yG+ne+ e  +++++ ++ + f++ ++ +l+ +a++s l                 + +   ++i  ++ + + ++ +q   a ++ +alk+m  + +tvlr+ + n ++         a+ee+   p  +lvpGd+i l +Gd +pad r++      r l + ++ ltGes+ vek+  ++     + +++l++ +++ Gt vvsG a a+v+atGsst fG++   v e + +     t + + ++     l  ++    v      +p +l  +  +    +e +++   +ava+G+   pe lp +++  l+ G+ +++++ viv++l +++ +G + ++c+dktGtlt ++++++  +
  MMETSP1061-20121228|5774_1 162 ETIlANSSLVKAHGLTSEESSRLLEIYGKNEIEELPPPSWFELIREQFEDRLVRILVGVAVLSALLeytssggsgavaeslwHRFAEPIVISSLLVINASVGVWQSKSAGNSIEALKAMQPSVCTVLRRRETNDDDddddddktvATEEIadyPSANLVPGDLIILKTGDKVPADCRLVRyyqgRRSLTVDETCLTGESIAVEKLLGKEGLaLPQAPVQLQTgMVFSGTTVVSGAAVALVVATGSSTEFGRIQSGVLEAKRDsqdqkTPLAQQLDDFGNQLTGLIgviCVgvwfaSIPKMLAKDSTVFSSPFEGMVYYakVAVALGVaaIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLV 551
                 4440444557889*******************998888888888899**********9999998878889********9998778888999999999*******************************987765431112222223445433356799********************963333589*****************987765433445555544399****************************99999655501111334445555554443333100331010034445555555556667888774134555454336***************************************************999887654 PP

  == domain 2    score: 116.6 bits;  conditional E-value: 7.2e-37
   TIGR01524  408 kvdeipfdferrrlsvvve.......eaaevrrlickGaveelltvathlre.ggavvalsesekeelkavteelnrqGlrvvavatkklka...........sead...........lskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGidandv.llGadieel........sdeelaaevek.ravfarltplqkerivtllkke.GhtvGflGdGindapalrkadvGisvdsaadiakeasdiillekslmvleegvieGretfgnilkylkmtassnfgnvfsvlvasafipflpmlalhlliqnllydv 708 
                  +   + f+ +r+ +sv+ +       + +  +rl++kGa + +l  +th+++ +g+v+ +s s +++l+++  ++  + lr +a+a+k  +            s++d             k  e+ l++ G+++ +dp++   +++i++ +++gi v ++tGd+   +  i ++v i  +d    G  ++++        s ee  + + k + vf r  p +k+ ++++l+++ G +  + GdG+ndapal++a +G+++ + + ++kea+d++l + ++  +  +v eGr +++n+  ++    s n g++ +++ a+ +    p+ a+hll  nl+ d 
  MMETSP1061-20121228|5774_1  674 RTATLEFHRDRKSMSVLANfngsqngNYKARNRLLVKGAANMVLDRCTHVKYqDGSVAKISGSLRRQLEKKITDMATRPLRCLALAVKDESNlqpslrnfqprSDNDvrkhpllkdpsKYKDIESGLTLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNIFDKDSpADGKSLKAFegqefflkSREEQIEILSKdNIVFCRAQPSDKQALIKMLQNDlGEIAAMTGDGVNDAPALQQAAIGVAMGTGTAVSKEAADMVLADDDFSTIVSAVEEGRTIYANMQAFICFLISCNIGEICAIFFATLLGFPEPLTAMHLLWVNLVTDG 1015
                  566788999999999997533222112223579****************9972568999***************************9964321111111111144554444433322112234899**************************************************955543144555555411111111555555555551568****************9976999999****************************************************************************998655557************9884 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   1.9   9.1e-31   2.2e-28      11     276 ..     236     557 ..     215     573 .. 0.83
   2 !   30.0   0.0   2.2e-10   5.2e-08     377     428 ..     801     852 ..     730     858 .. 0.87
   3 !   86.6   0.3   1.6e-27   3.8e-25     430     528 ..     888     986 ..     877    1010 .. 0.88

  Alignments for each domain:
  == domain 1    score: 97.3 bits;  conditional E-value: 9.1e-31
   TIGR01525  11 aalavslvlega...lllvllllgelLeelakskasealsellelapeealllkedd.................seeevaveelqvgDivkVkpGekipvDGevie.....gesevDesllTGEslpvekkegde...............ViaGtvnlegsleikvtkvgedstlaqivklveea....qeskakiqrladklasyfvplvlaialltflvwlalga..........lk.a.ealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvevlkdse 276
                 +a+a sl+   a   ++  ll +   +  + ++ a +++++l++++p+ +++l+  +                 ++ + + ++l +gD +++k+G+k+p+D+++++      + +vDe  lTGEs+ vek  g+e               V++Gt+  +g  +  v ++g+ + + +i + v ea    q +k+++ + +d++ ++++ l+ +i + ++++++  +           ++      + ava+ v+a P +L   +++ +  ++ ++a++ +++++  ++E+l  v++++ DKTGTLT+ ++tvk++  +++s+
  MMETSP1061-20121228|5774_1 236 GAVAESLWHRFAepiVISSLLVINASVGVWQSKSAGNSIEALKAMQPSVCTVLRRREtndddddddddktvateEIADYPSANLVPGDLIILKTGDKVPADCRLVRyyqgrRSLTVDETCLTGESIAVEKLLGKEglalpqapvqlqtgmVFSGTTVVSGAAVALVVATGSSTEFGRIQSGVLEAkrdsQDQKTPLAQQLDDFGNQLTGLIGVICVGVWFASIPKMLakdstvfsspFEgMvYYAKVAVALGVAAIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLMEKSK 557
                 34444444443377699************************************98888999********999888888999***********************95333324569**************9888755555555555666669***********************999977776652222789****************99988888888887633336799887655222257778899999**************************************************************99998766 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 2.2e-10
   TIGR01525 377 ellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgiid 428
                 +l+gl+ ++D+ rpe+++ i++   +gi+v+++tGD r +a a+Ak++ i+d
  MMETSP1061-20121228|5774_1 801 TLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNIFD 852
                 899*********************************************9965 PP

  == domain 3    score: 86.6 bits;  conditional E-value: 1.6e-27
   TIGR01525 430 vvaellPedKlakvkklqeeegkkvamvGDGiNDApALaaAdvGiamgsgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlalvynlvai 528
                 v++ + P+dK a +k lq+  g+  am GDG+NDApAL +A++G+amg+g++v++eaAD+vl +dd s++++a++  r++ ++++  + + +  n+  i
  MMETSP1061-20121228|5774_1 888 VFCRAQPSDKQALIKMLQNDLGEIAAMTGDGVNDAPALQQAAIGVAMGTGTAVSKEAADMVLADDDFSTIVSAVEEGRTIYANMQAFICFLISCNIGEI 986
                 8999**************998889***********************************************************9998888887776444 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0012      0.28     135     171 ..     171     208 ..     135     219 .. 0.82
   2 !  110.9   0.1   3.1e-35   7.5e-33     244     701 ..     316     854 ..     305     858 .. 0.73
   3 !   54.4   0.0   3.7e-18     9e-16     758    1048 ..     866    1192 ..     852    1199 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0012
   TIGR01657 135 gesnGLtkgeiakrkelyGkneie.ikvksfleLlvee 171
                  + +GLt  e +++ e+yGkneie ++ +s +eL+ e+
  MMETSP1061-20121228|5774_1 171 VKAHGLTSEESSRLLEIYGKNEIEeLPPPSWFELIREQ 208
                 3445*******************647899999998776 PP

  == domain 2    score: 110.9 bits;  conditional E-value: 3.1e-35
   TIGR01657 244 sdelvpgDivlisrleekllpcDavLle...g..scivnEsmltGEsvpvlKvpieeeedsdeklqlkekskkhvLfgGTkvlqirpdegdtkvlaiVvrTGFstskGqLvrsilypkprvfkfyk.....dslkfilfla...vlaligfiyvlielikne......rskkklilrs...ldiitivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnaee.................flkevtedssekksetlkalatchsltkledklvG.Dpldlkmleavgwtlee.....................edesaleesilavvrtedktkelsiirrfeFssalkrmsvivkteeerkke....llafvKGaPEtiaellske............tvpsdykevlksytreGfRvlAlaskeLp..kltlskaq.....dlsR.....d.....avEsnleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekk 701
                 s +lvpgD++ ++   +  +p+D+ L++   g  s  v+E  ltGEs++v K   +e +      q   + +  ++f GT+v+        ++++a+Vv TG st  G++ + +l +k r+++++k     +   f   l     +  +g+++  i  +  +       +++ ++  +   + + +  +P +LPa ++++   + +r++++++   +  ++++ G+++v+c DKTGTLT +++ ++ + +++++++                 +++   +d+s+ +s+ +++ a c + + + ++  G D  +l+ +e +g   e+                     ++++ +++s +a  ++++  ++      +eF+   k+msv+++ ++ ++ +      + vKGa  ++ +++ +             ++  + ++ +++++ +  R lAla k     + +l+++q     d+ +     d     ++Es l+++Gl+ ++ + +p+ ++ i++  +a irv+mitGD   Tav +a++v+i +k 
  MMETSP1061-20121228|5774_1 316 SANLVPGDLIILK--TGDKVPADCRLVRyyqGrrSLTVDETCLTGESIAVEKLLGKE-GL--ALPQAPVQLQTGMVFSGTTVVS-------GAAVALVVATGSSTEFGRIQSGVLEAK-RDSQDQKtplaqQLDDFGNQLTgliGVICVGVWFASIPKMLAKdstvfsSPFEGMVYYAkvaVALGVAAIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLMEKSKKspivehhvegvsyspygNIEGTVADRSSLISDVIAVAALCNDARIMGNDHDGkDSSNLQDFERTGEPTEAalcvlaeklgalqskdlgkddDQHQDKPNSEVASYHVDQWREKHPRTATLEFHRDRKSMSVLANFNGSQNGNykarNRLLVKGAANMVLDRCTHVkyqdgsvakisgSLRRQLEKKITDMATRPLRCLALAVKDESnlQPSLRNFQprsdnDVRKhpllkDpskykDIESGLTLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNIFDKD 854
                 889**********..9999*******96333333789***************98885.44..456777788899*******984.......6799**************998888654.4444444111114444544444000444555555544322222111111233344444311133345689****************************************************************9999************9999666555555688888888888898888887777766888888888888888878888888888888889998433333444444455567777799999999**************99988765544566799************85311122222111134567788888999999*******9963322233333331111144332222213333389*****************************************************98775 PP

  == domain 3    score: 54.4 bits;  conditional E-value: 3.7e-18
   TIGR01657  758 sGkalavllekskellkklllkvkVfARvaPeqKeelvetlkk.ldytvlmcGDGaNDcgALkqAdvGisLseaeAsv..aapFtSklasiscVtnvireGRa..aLvtslqvFkylalysliqflsvliLylkgsklgdgQfltidllliavvalllsrskplkkLskerpssnllsvyllls.vllqfvlvilslvllvfevkkqpwykeeev.................................velekenakslentvvfivslfqylivaivnskGkpfreplyknkpfvvsllv...llaillvllleesselnellklvllpqef 1048
                  +G+ +  +l++ +e+++ l     Vf R +P++K+ l++ l++ l+ + +m GDG ND  AL+qA +G+++    A    aa  +    + s +++ + eGR   a ++++ +F +      i ++ + +L  +   l+ + +l+++l+   + a +l+ ++p  +  ke+p ++  +  ++++ +l+  +l  l   + ++ v +q++ ++  +                                  e+ +   ++l  t++ ++ +f+ l+  +v    + f+   ++nk +++ ++    l +++l++     + ++e++ +v l++e 
  MMETSP1061-20121228|5774_1  866 EGQEF--FLKSREEQIEILSKDNIVFCRAQPSDKQALIKMLQNdLGEIAAMTGDGVNDAPALQQAAIGVAMGTGTAVSkeAADMVLADDDFSTIVSAVEEGRTiyANMQAFICFLISCNIGEICAIFFATLLGFPEPLTAMHLLWVNLVTDGPPATALGFNPPSPNSMKEKPRPS--NEPIMTKwLLIRYMLTGLYVGVATIGVFAQHYLQQGISlkqlsnwsncgtdwtpvggtswltstnacsdlfREAGRTLPQTLSLTTLVCMEMFKALS--AVSMNDSLFKVAPWRNKWLLFGVAGpflLHLSVLYSSKLGLPGFGEAFGMVSLTKEH 1192
                  33333..445555999999999*******************9559**************************9998854349*********************8334456788999888888999999999*********************************999888888765..3333332133333333333333333333333333222233334556667788888888888888888777666677777777778888888777655..444455678888888888888777431133333333334455666666666666554 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.43     1e+02      43      87 ..     246     290 ..     233     295 .. 0.90
   2 !   31.7   0.0   6.8e-11   1.6e-08      88     215 ..     313     461 ..     303     469 .. 0.82
   3 !   28.2   0.2   7.6e-10   1.8e-07     214     287 ..     482     555 ..     473     572 .. 0.90
   4 !   24.7   0.0   8.5e-09   2.1e-06     359     415 ..     801     855 ..     778     864 .. 0.88
   5 !   65.7   0.2   3.4e-21   8.2e-19     410     501 ..     888     983 ..     880    1002 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.43
   TIGR01511  43 FdelallivllllGrlleelakskaskalekLaklkpeeatllkk 87 
                 F e +++  ll++   +     ++a +++e+L +++p+ +t+l++
  MMETSP1061-20121228|5774_1 246 FAEPIVISSLLVINASVGVWQSKSAGNSIEALKAMQPSVCTVLRR 290
                 89999************************************9975 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 6.8e-11
   TIGR01511  88 dvdveelqvgdilkvkpgekipvDGvvv...eGes..evdeslltGEslpvkkkvgde...............viaGtvngegsllvkvtkvgedtllaqivklveeAqq.skakiqrlAdkvaslfvpvviaiavltfviWllaleva 215
                 d + ++l +gd + +k+g+k+p+D+++v   +G+   +vde+ ltGEs++v+k  g+e               v++Gt+  +g+ +  v ++g++t   +i + v eA+  s+ +   lA+++  +   +  +i+v+ + +W+ ++  +
  MMETSP1061-20121228|5774_1 313 DYPSANLVPGDLIILKTGDKVPADCRLVryyQGRRslTVDETCLTGESIAVEKLLGKEglalpqapvqlqtgmVFSGTTVVSGAAVALVVATGSSTEFGRIQSGVLEAKRdSQDQKTPLAQQLDDFGNQLTGLIGVICVGVWFASIPKM 461
                 56778999******************9944457542379************997776433344444444445599****************************99999861455667799999999999999***********998655 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 7.6e-10
   TIGR01511 214 vavtvliiaCPcalGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtevkelse 287
                 vav+  + a P +l   i l +  +t ++a++ v++++  ++e++  v++++ DKTGTLT+ +++v++   +++
  MMETSP1061-20121228|5774_1 482 VAVALGVAAIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLMEK 555
                 6788889999999999999***********************************************99876665 PP

  == domain 4    score: 24.7 bits;  conditional E-value: 8.5e-09
   TIGR01511 359 elaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgievlaevl 415
                 +l++++ ++d  +pe+++ i++   +gi+v+++tGD + +a a+Ak + i  + + +
  MMETSP1061-20121228|5774_1 801 TLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNI--FDKDS 855
                 5789999****************************************987..55555 PP

  == domain 5    score: 65.7 bits;  conditional E-value: 3.4e-21
   TIGR01511 410 vlaevlPedKaakvkelqe...kkvamvGDGiNDapaLaaadvgiaigagtdvaieaadvvlln.dlkdvataielsrktlkkikqNllwalgYNv 501
                 v+  ++P+dK a++k lq+   +  am GDG+NDapaL +a +g+a+g+gt v++eaad+vl + d + +++a+e  r  + +++  +++ +  N+
  MMETSP1061-20121228|5774_1 888 VFCRAQPSDKQALIKMLQNdlgEIAAMTGDGVNDAPALQQAAIGVAMGTGTAVSKEAADMVLADdDFSTIVSAVEEGRTIYANMQAFICFLISCNI 983
                 677899************8444579*************************************9726899**************9998888777776 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.52   1.2e+02      13      62 ..     241     290 ..     236     297 .. 0.85
   2 !   54.5   2.6   7.4e-18   1.8e-15      65     259 ..     315     554 ..     298     566 .. 0.76
   3 !   18.0   0.0   8.2e-07    0.0002     314     363 ..     800     848 ..     782     855 .. 0.91
   4 !   68.1   0.4   5.3e-22   1.3e-19     367     458 ..     888     983 ..     885    1007 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.52
   TIGR01512  13 vavgellegalllllfslgetLeelaskrakealkaLlelaPdtarrlee 62 
                  + +  +e +++  l+ +  ++  + sk a ++++aL++++P+  ++l++
  MMETSP1061-20121228|5774_1 241 SLWHRFAEPIVISSLLVINASVGVWQSKSAGNSIEALKAMQPSVCTVLRR 290
                 56677888899999999999**********************99887765 PP

  == domain 2    score: 54.5 bits;  conditional E-value: 7.4e-18
   TIGR01512  65 aveelkvgdvvvVkkGervPvDGevls.....gessldesalTGEsvpvekakgde...............vlaGainldgvlkievtkeaedstiakivklveea....qsekaktqrlidrlaekytlvvlliallialvs.....................sllvalvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvsdveale 259
                 + ++l +gd +++k+G++vP+D++++      ++ ++de  lTGEs+ vek  g+e               v++G++ ++g+    v+++ + + + +i + v ea    q +k+++++ +d +++++t ++ +i + ++++s                     ++ va++l v+a P +L + +++ l  +  + a++ +++++   +e+l+ v+ +  DKTGTLT+++++v++++ +e
  MMETSP1061-20121228|5774_1 315 PSANLVPGDLIILKTGDKVPADCRLVRyyqgrRSLTVDETCLTGESIAVEKLLGKEglalpqapvqlqtgmVFSGTTVVSGAAVALVVATGSSTEFGRIQSGVLEAkrdsQDQKTPLAQQLDDFGNQLTGLIGVICVGVWFASipkmlakdstvfsspfegmvyYAKVAVALGVAAIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLME 554
                 57899*******************9853322245689*************987765555555555555555999*999999999999999999*99999887776622226789***************99888887777643111111111111111111111234567777999999999999999999******************************************9987765 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 8.2e-07
   TIGR01512 314 ekllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeel 363
                  +l+gl+ ++D  r+++a+ i++   +g+ +++++tGD + +a ++a+ +
  MMETSP1061-20121228|5774_1 800 LTLVGLVGIKDPARPEVADSIQKCTDAGI-RVIMITGDARDTAVAIAKDV 848
                 5789************************6.88***************986 PP

  == domain 4    score: 68.1 bits;  conditional E-value: 5.3e-22
   TIGR01512 367 vhaellPedKveivkelke.....vamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiil 458
                 v + ++P dK + +k l++     +am GDG+NDapaL +A +g+amG +g++v+ e+AD+vl +dd s+++ a++ +r++ +++++ + + +++ +
  MMETSP1061-20121228|5774_1 888 VFCRAQPSDKQALIKMLQNdlgeiAAMTGDGVNDAPALQQAAIGVAMG-TGTAVSKEAADMVLADDDFSTIVSAVEEGRTIYANMQAFICFLISCNI 983
                 77899**********99875555579**********************.*******************************99999988877655433 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   1.8   2.6e-12   6.2e-10     114     328 ..     309     558 ..     303     569 .. 0.71
   2 !   17.7   0.1   6.8e-07   0.00016     437     485 ..     802     850 ..     795     859 .. 0.92
   3 !   69.7   0.4   1.3e-22   3.1e-20     490     593 ..     890     994 ..     883    1020 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 2.6e-12
   TIGR01497 114 gaikkvpadelkkGdvvlveaGdvipadGevi...eGvas..vdesaitGesapvlkesGgd.....fa.......svtGGtrivsdwlvvevtadpGesfldrmialveGaer....rktpneialtvllvalt.........lvfllvvatl....ypl.aayagvkisvsvlvallvalipttiGGllsaiGiaGmdrvarfnviatsGraveaaGdvdtlvldktGtitlGnrlaeefipvqGadk 328
                  +i + p+ +l  Gd++++++Gd +pad  ++   +G  s  vde+ +tGes  v k  G +      a        v  Gt +vs   v  v a+   + + r+ + v  a+r    +ktp    l  +   lt         + f  +   l     ++ + + g+     v val va ip  +  +++     G  r+a+ nvi     +ve+ G v ++  dktGt+t  +   + ++ ++  +k
  MMETSP1061-20121228|5774_1 309 EEIADYPSANLVPGDLIILKTGDKVPADCRLVryyQGRRSltVDETCLTGESIAVEKLLGKEglalpQApvqlqtgMVFSGTTVVSGAAVALVVATGSSTEFGRIQSGVLEAKRdsqdQKTPLAQQLDDFGNQLTgligvicvgVWFASIPKMLakdsTVFsSPFEGMVYYAKVAVALGVAAIPEGLPAVITLCLSLGTRRMAQRNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLMEKSKK 558
                 568899************************9944446544339***********98876654222221211111114667********999999999999999998877777664444899976666544444431000000002232221122111123313467777778999***********99999999999************************************98877777776665555 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 6.8e-07
   TIGR01497 437 iyGviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGv 485
                 ++G++ +kd  ++ + + +++    Gi+ im+tGd r ta +iak+  +
  MMETSP1061-20121228|5774_1 802 LVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNI 850
                 68999****************************************9765 PP

  == domain 3    score: 69.7 bits;  conditional E-value: 1.3e-22
   TIGR01497 490 aeatpedkievikkeqae.GklvamtGdGtndapalaqadvgvamnsGtqaakeaanmvdldsdptklievveiGkqllitrGalttfsiandvakyfaiipaif 593
                   a+p dk ++ik  q++ G + amtGdG ndapal qa +gvam +Gt  +keaa+mv  d d + ++  ve G+ +     a+  f i+ ++    ai  a +
  MMETSP1061-20121228|5774_1 890 CRAQPSDKQALIKMLQNDlGEIAAMTGDGVNDAPALQQAAIGVAMGTGTAVSKEAADMVLADDDFSTIVSAVEEGRTIYANMQAFICFLISCNIGEICAIFFATL 994
                 5799*********998655**************************************************************************999988876654 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0069       1.7      75     131 ..     291     346 ..     242     362 .. 0.81
   2 !   78.7   0.1   1.9e-25   4.6e-23     344     675 ..     513     854 ..     507     857 .. 0.74
   3 !   27.6   0.2   5.4e-10   1.3e-07     743     852 ..     883     991 ..     857    1008 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0069
   TIGR01652  75 rrksDkevNnkkvevleesakfkeikwkdlkVGdivkvkkdeeiPaDllllssseed 131
                 r ++D +  +   + +   ++ ++ ++ +l  Gd++ +k ++++PaD+ l++  +  
  MMETSP1061-20121228|5774_1 291 RETNDDDDDDDDDKTVAT-EEIADYPSANLVPGDLIILKTGDKVPADCRLVRYYQGR 346
                 445555555544444444.5899999**********************988765555 PP

  == domain 2    score: 78.7 bits;  conditional E-value: 1.9e-25
   TIGR01652 344 tpasvrtsnlneeLGqveyifSDKTGTLTqNkmefkkcsiagvsygkkleevkdalrkrkgskveeeeelleelkevtfvdeklvkklktkeeeaelieeflkaLAlChtvvpevedddee....eltyq.aeSPDEaAlVkaardlGfsllertkksisllieerg..........eekeyeiLnvleFnSsrKRmsvivrlpdd.......ellLlcKGADsvifkrlse..........esekvlektkehlekyaseGlRTLviarrelseeeYeewnekyeeAstalkdreeklee..vaeliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLlsee 675
                 +++ vr++   e LG v  i SDKTGTLT+N+m+ k++ +   s  kk + v+++++  + s          +                t  ++++li++++ + AlC+      +d d +      +++ +  P EaAl   a++lG    +   k    + ++ +            +++     leF+ +rK msv+  ++         + +Ll+KGA +++++r  +           s ++++++++++ ++a+  lR L +a ++  e++ +   ++++  s    +++  l+    ++ iE  L+l+g  +i D    +V ++i++ + Agi++ ++TGD  +TA++i+   ++ +++
  MMETSP1061-20121228|5774_1 513 RNVIVRNLPSVETLGCVSVICSDKTGTLTTNEMTVKSLVLMEKS--KKSPIVEHHVEGVSYS-------PYGN-------------IEGTVADRSSLISDVIAVAALCNDARIMGNDHDGKdssnLQDFErTGEPTEAALCVLAEKLGALQSKDLGKDDDQHQDKPNsevasyhvdqWREKHPRTATLEFHRDRKSMSVLANFNGSqngnykaRNRLLVKGAANMVLDRCTHvkyqdgsvakISGSLRRQLEKKITDMATRPLRCLALAVKD--ESNLQPSLRNFQPRSDNDVRKHPLLKDpsKYKDIESGLTLVGLVGIKDPARPEVADSIQKCTDAGIRVIMITGDARDTAVAIAKDVNIFDKD 854
                 56788999999*************************99986554..3444334333333221.......1111.............1123567899*************9887776443332111344442568**************8765433322221211111212223333333445556789**************99877788988999************9988776666554334456788999999**************96..777888888898877776677777775115678**************************************************999998876 PP

  == domain 3    score: 27.6 bits;  conditional E-value: 5.4e-10
   TIGR01652 743 kckavlcCRvsPsqKaavvklvkkslskvtlaigdGaNDVsmiqeAdvGvGisGkEGkqAvmasDfaigqFrfLekLlLv.HGrwsYkRisklilyffyknlilalilfwy 852
                 +   ++ CR  Ps K a++k++++ l ++    gdG ND   +q+A +Gv + G+       a+D+ ++   f + +  v  Gr  Y  +   i++++  n+   ++ +++
  MMETSP1061-20121228|5774_1 883 SKDNIVFCRAQPSDKQALIKMLQNDLGEIAAMTGDGVNDAPALQQAAIGVAM-GTGTAVSKEAADMVLADDDFSTIVSAVeEGRTIYANMQAFICFLISCNI-GEICAIFF 991
                 3467999*******************************************75.7777777889999999877766655442799999999999999887764.45555555 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       9.5   2.3e+03       4      23 ..     532     551 ..     531     560 .. 0.73
   2 ?    3.2   0.0      0.06        14      22      54 ..     815     847 ..     809     855 .. 0.83
   3 !   20.3   0.2   3.5e-07   8.4e-05     127     207 ..     876     953 ..     868     961 .. 0.86

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 9.5
   TIGR01487   4 vavDiDgTltdknrlislra 23 
                 + +D  gTlt ++++++  +
  MMETSP1061-20121228|5774_1 532 ICSDKTGTLTTNEMTVKSLV 551
                 67888999999887776544 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.06
   TIGR01487  22 raieairklekkGikvvlvtGnevkfvealavl 54 
                 ++ + i+k    Gi+v+++tG     + a+a+ 
  MMETSP1061-20121228|5774_1 815 EVADSIQKCTDAGIRVIMITGDARDTAVAIAKD 847
                 67789****************998887777665 PP

  == domain 3    score: 20.3 bits;  conditional E-value: 3.5e-07
   TIGR01487 127 erglevvasgyavhilkkgvdKgvgvkklkellGlkkeevaaiGDsenDldlFrvagfkvavanAddelKeiaDlvtenes 207
                 e ++e+ +  + v    ++ dK + +k+l++ lG      a+ GD+ nD ++ ++a ++va++  +   Ke+aD+v   ++
  MMETSP1061-20121228|5774_1 876 EEQIEILSKDNIVFCRAQPSDKQALIKMLQNDLGEIA---AMTGDGVNDAPALQQAAIGVAMGTGTAVSKEAADMVLADDD 953
                 6778888888889999999**************9444...678********************************977665 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0       0.6   1.4e+02      18      42 ..     813     837 ..     805     888 .. 0.73
   2 !   22.7   0.8   5.7e-08   1.4e-05     196     246 ..     900     951 ..     895     960 .. 0.83

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.6
   TIGR00099  18 spetkealaklrekGikvvlaTGRs 42 
                 +pe+ + ++k    Gi+v+  TG  
  MMETSP1061-20121228|5774_1 813 RPEVADSIQKCTDAGIRVIMITGDA 837
                 67889999**************965 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 5.7e-08
   TIGR00099 196 laeklgislenvia.iGDseNDieMleaagvgvamgnaneelkaladyvtds 246
                 l + l+ +l +++a  GD+ ND++ l+ a +gvamg ++   k++ad+v ++
  MMETSP1061-20121228|5774_1 900 LIKMLQNDLGEIAAmTGDGVNDAPALQQAAIGVAMGTGTAVSKEAADMVLAD 951
                 5666667777776526********************************9876 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   8.4e-06     0.002     171     217 ..     912     959 ..     883     961 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 8.4e-06
   TIGR00338 171 tvavGDGanDlsmikaAglgiafna.kpvlkekadiviekkdltdile 217
                   + GDG nD +++++A +g+a  +   v ke+ad+v+ + d+  i++
  MMETSP1061-20121228|5774_1 912 AAMTGDGVNDAPALQQAAIGVAMGTgTAVSKEAADMVLADDDFSTIVS 959
                 4588*******************8615566889999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.53u 0.18s 00:00:01.71 Elapsed: 00:00:01.71
# Mc/sec: 949.40
//
Query:       MMETSP1061-20121228|5781_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.34
# Mc/sec: 2833.88
//
Query:       MMETSP1061-20121228|5782_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1421.88
//
Query:       MMETSP1061-20121228|5783_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|5780_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 2786.44
//
Query:       MMETSP1061-20121228|5789_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|5786_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2102.72
//
Query:       MMETSP1061-20121228|5788_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 1873.51
//
Query:       MMETSP1061-20121228|5787_1  [L=1286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-126  420.6  78.9   7.9e-105  349.5  53.8    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
   1.1e-107  359.0  78.5   3.5e-107  357.4  54.4    1.8  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.15    8.3   0.0       0.04   10.2   0.0    6.7  7  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.5  53.8  5.8e-108  7.9e-105       1    1050 [.       2    1077 ..       2    1081 .. 0.83
   2 !   70.5   0.0     1e-23   1.4e-20    1048    1162 ..    1105    1223 ..    1095    1226 .. 0.83

  Alignments for each domain:
  == domain 1    score: 349.5 bits;  conditional E-value: 5.8e-108
   TIGR02169    1 yieklelenFKSFgkkkeI.pflkgftvisGpNGSGKSNiiDallFaLGlssskalRAerLsdLiskgakeaksakeaeVtvtfknddkklp..delevsrrlkvtkegkySyYylNgksvrlseihdlLakagiy.pegYnvVlQGDvtkiismsaveRRkiIdeiaGvaeFdekkekaleeLeeveeriervelvieevrqqlerLekerekaerYkeLkkekreleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlek...aekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasie....GvlGtvaqLgkve.erYalAiEvAaGnrlnnvVVeddavAkeaIellkerkagratFLPLnkmrskerdlsilaedGvidfavdlvefdekyepvvkyvlgdTlvvedleaarrlmgkfRl..VtLeGellekSGaitGGs....raersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleekl.seleeeleekkeelkeleaeie.eleeklak.lkealedleael..seekieeieeelekleeevsriearlee.ieaelnklelekelleee..iqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepe.......eelslekvkkelekveeeleaLepvNmkAieeYeevekrldelkekrekLeeErkellerieelekkkrevFmeaFeainenfkeifaeLs.dGtgeLiLen 1050
                  +i+++ + nF+SF+++ eI pf    + + G NGSGKSN+ Da+ F+L   +  +lR e    L ++g   ++ a +a V+v+f+n d++++   + ev+ r+ v  +     + l  k+++++e+++lL  ag + ++ Y +V QG + ++  m+ v+R ++  ++aG+  ++ kk + l +++e +++ie++++++  + ++l+ L+ e+e+   Y+ L + ++ le+tl  kel++++  + +ie++     +el++l+e+ ++ ++ ++++ ++l+  ++k+++  + ++l + ++ +      e l  + +e e  +  + ++ ++ +ae+++l+ ei++ ++++ ++k+  ++ +++l++ ++e+++  ++++ + +++ + + e ++++e+ ++l++++ e++++++++++ l +++ +la+l+ ++ ++e++i+  ++e  +++e++++  ++le  ++++ k   ++k+  ++ e l +   e +e++r  +     +++ +++s + ++ e +++ +        +G+v +    + +++++A+EvA  n+l  v+V++da+A+  ++ l e k+gr+tF+PLn++r  +++ ++++   +   +   +e+d++ + ++++++   l+ ++ e a +  +k+R+  +tL+G+l  + Ga+ GG+    +++ ++++ +++ +++ +r +e+  + ++e +++ ++++++ ++++ l++k  +  ++i++ e  l+q +++  + ++++e le+++  +le++le+ +  +++l++ei  el+ +l++  + al++l++ +   ++ki   ++ +e+l++e+ r+e +le+ + ++  +l++ ++ l++   +  +   +   +  +++ e+++ee +   +e  + ++elea+++e+++  ++Lk+e   ++++l++l+   ++   +++++++r+++l  k++    + +++ ++++e  + p+       ++ ++ +++++le+v ++l++   vN kA ++Y +  +++++l +++++L + +++++e++e+l++kk e+  ++F  ++++f+e+f+eL   G geLi+ +
  MMETSP1061-20121228|5787_1    2 HIKQITISNFRSFRQQPEIhPFAATTNCVLGRNGSGKSNLFDAVQFVLLAPRFATLRSEERQALLHEG--SGSAAVNAFVEVVFDNSDNRFSleHSDEVVLRRTVGSKKD--EFFLQRKRATKQEVQSLLEGAGFSkSNPYFMVQQGKIQSLCLMTDVQRLELLQQVAGTTLYEDKKSESLVKMQENSQSIEKIDSILGDIDERLNELQGEKEELTVYQSLDRDRKALEYTLYDKELRKARLVLDNIEHKRVIHLRELTELHEHCKKTHDDIQNADAVLKVKTEKLKRNRNHRAL-LEQDRRTAYKLKEDLVLKCEELEGMVGMIRDNTKRNQAELESLEGEIHSTQGRLDDKKATLREEEDALRKMEQERDQAARKIDGLYARQGRGK-EYNSKEERDDSLRQQIREVEGQQSQKQQVLVQQQDALANLRRQIVDLEASIESGKTEGGSKHEALQALHKRLEDRQNQRLKlmdVRKNAWRQAESLTETLAECREARRSAHDNLY-RSIPRNTSLGLRSLERIVDREGLvrgqQYFGMVLENMTLKdPKFQTAVEVASQNALFHVIVDTDATAALLMKRLEEGKLGRVTFMPLNQLRV-QNNTQYPQSGDIAPLLSTCIEYDPRVKRAMQQIFDRKLLARSPEVASEWSDKLRMdcITLDGDLCSRKGALSGGYvdvqKSRIKAYSAKTNAEANFRRAQEEHRKVDAEAKQAEQDVANVSEEISRLQHKQTQLARMIQNQEVGLSQSQSQIGQYSKQAERLESQIiPSLEQNLEDFQFDIARLREEIGtELTSSLSEgERSALNELKQVQvgLHDKIADQRDAVEELRAERTRLEFVLENnLYRRRTELTQVNNTLDSGegSGGMGGGVTTNTMLQEQAERQLEERRLAAREAIRDADELEAKLEEIRKAEEELKNELISAKNDLERLKTVDNKNTRDLDDAQRRAETLMGKKSLNIGRRDNYMRKIQELGSLPPdselrhyKNQNISDLERSLERVSKKLKKYSHVNKKAFDQYVNFSEKRESLMDRKDELDRGAEKVKELVESLDRKKDEAINRTFRGVSKHFAEVFKELVpLGAGELIMRT 1077
                  8*************9999978**********************************************9..667889****************996666666666655555..6*********************972578***************************************************************************************************************************************************96655554.444444444445677778888888888888888888888888888888888888888888888888888888888888888888888777654.5667778889999999999999999999999999999999999999999999988888888888888777777666654431003444444444444444444444443333332.33555555566666666555322222257999999888888***************************************************.8888898885555677789***********************************9999*****************8764334456778888999999******************************************************************996379*******************725677777636789****98763368999999**************9999642666666666555555543112233334444444455566667777777777777777777777777777777777777777777777777777777777777777777777666666666665555333333221111111667899************************************************************************************999******976 PP

  == domain 2    score: 70.5 bits;  conditional E-value: 1e-23
   TIGR02169 1048 LenPddPfagglelkakPkdKavqr.leamSGGEKsltALsfifAiQrykPspfYafDEvDmfLDgvNvervaklikekake....aQfivvslrkpmleaAdraiGvtlrrdgesqvlg 1162
                  LenPd  +  g+ +k++      +  +  +SGG K+l+A+++ifAiQr  P+pfY+fDE D  LD    + va++i ++a++    +Qfi  ++r  ++  A++  G++ + +++s++ +
  MMETSP1061-20121228|5787_1 1105 LENPDVSLYRGVGIKVRFSAVGENFiMSQLSGGQKALVAMALIFAIQRCDPAPFYIFDELDQALDSTYRQAVANVIYNHANNpdnpTQFITSTFRPELVRIAKNCYGISHQ-NKVSSIHS 1223
                  666666666666666665544333304569************************************************998655559************************.99999875 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.4  54.4  2.5e-110  3.5e-107       2    1175 ..       3    1220 ..       2    1225 .. 0.82

  Alignments for each domain:
  == domain 1    score: 357.4 bits;  conditional E-value: 2.5e-110
   TIGR02168    2 LkklelaGFKSFadkttin.fekgitgiVGPNGcGKSNivDAirWVLGEqsakaLRgekmeDVIFaGseerkplslAeVeLvfdNsdgllpgadyseisitRrlyRdGeseYliNgqpcRlkDiqdlfldtGlgkes.ysiieqGkieeiieakpeerRailEEAAGvskYkerkketekkLerteenLeRledilkElerqlksLerQaekAekykelkeelrelelallvlrleelk..............eeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesle..slqenleglsegvkallknksklagilgvlseliev.eekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkk.......eieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerl.aqlekeleeleeereeleeele.eaeeelkeae.eeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekele...eleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkrleekikeLGpVNlaAieEyeelkeRyeflekqkeDleeAkekLeeaIeeidkearerfkdtfekvnenfqevFsklFggGeaeLelt.dpedl.............................LeagieIkaqPpGK.klqnlslLSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakllkefskk....tQFIviTHnkgTMeeadqLyGVTMqekGVSk 1175
                  +k+++++ F SF ++ +i+ f +    + G NG+GKSN  DA+++VL   +  +LR+e+ +     Gs +  ++  A Ve+vfdNsd++++   ++e+ + Rr   + + e+++  +++  +++q+l+ ++G +k+  y +++qGki+++    + +r ++l   AG + Y  +k e++ k+++ ++ +e+++ il +++++l++L+ ++e+ + y+ l ++ ++le +l+ ++l++++              +el el e  k++ +++++++a lk ++e+l++ r+ ++ le++ +++ k  ++l  + ++le ++ +++++ ++ ++ele+le +++ ++ +++++++ l e e+ l ++++e ++++ +++ +  +++   ++++++ee+ ++lr++++e+e q+++ ++ l ++++ l +l ++   l+++ie+ +++   ++++l++l+++le+++++  +l   ++++ +++e+l+e l+e ++a+++a+++l +   r +sl   sl++ ++      + l+  ++    ++g++ e ++  ++k+++A+e+a +++l +v+v+++++a   ++ l++ +lGrvtf+pl+     +++++++ +  ++ +++ +++ ++++d+++++a+++++++ l++ + + A e + klr     +tldG+l +r+g+++gg  + ++s+++  +       + ++++ee +++ ++++++e+ ++++++e ++l+++ ++l + ++++e  ls+ ++++ + +k++e+le+++  +le++le+++  ++ l+ee+  e+++ l+e e + ++el++    l ++++++r+a++el+ae t+l+  ++++  r++   ++++++ ++ e    +     +++  +e++e+++ee + + +e+ ++++el+++ +++++a +el++el +++++l++l++  ++ +r+l+ ++ + ++l  +++    ++++   +++e ++l  +   ++++  +++ +++e++l+r+ +k+k+   VN +A ++y + +e++e l   k++l++  ek++e +e +d++  e  + tf  v ++f+evF++l   G +eL +    ++                              L  g+ Ik+++     +  +s+LSGG KAL+A+aL+FAi +  PaPf+i+DE d +LD +  +  a+++ + +++    tQFI  T + + +  a + yG+  q+k VS 
  MMETSP1061-20121228|5787_1    3 IKQITISNFRSFRQQPEIHpFAATTNCVLGRNGSGKSNLFDAVQFVLLAPRFATLRSEERQALLHEGSGS--AAVNAFVEVVFDNSDNRFSLEHSDEV-VLRRTVGSKKDEFFLQRKRATKQEVQSLLEGAGFSKSNpYFMVQQGKIQSLCLMTDVQRLELLQQVAGTTLYEDKKSESLVKMQENSQSIEKIDSILGDIDERLNELQGEKEELTVYQSLDRDRKALEYTLYDKELRKARlvldniehkrvihlRELTELHEHCKKTHDDIQNADAVLKVKTEKLKRNRNHRALLEQDRRTAYKLKEDLVLKCEELEGMVGMIRDNTKRNQAELESLEGEIHSTQGRLDDKKATLREEEDALRKMEQERDQAARKIDGL-YARQGRGKEYNSKEERDDSLRQQIREVEGQQSQKQQVLVQQQDALANLRRQIVDLEASIESGKTEGGSKHEALQALHKRLEDRQNQRLKLMDVRKNAWRQAESLTETLAECREARRSAHDNLYRSIPRNTSLGlrSLERIVDR-----EGLVRGQQ----YFGMVLENMTLkDPKFQTAVEVASQNALFHVIVDTDATAALLMKRLEEGKLGRVTFMPLN-----QLRVQNNTQYPQSGDIAPLLSTCIEYDPRVKRAMQQIFDRKLLARSPEVASEWSDKLRM--DCITLDGDLCSRKGALSGGYVDVQKSRIKAYSaktnaeaNFRRAQEEHRKVDAEAKQAEQDVANVSEEISRLQHKQTQLARMIQNQEVGLSQSQSQIGQYSKQAERLESQIiPSLEQNLEDFQFDIARLREEIGtELTSSLSEGErSALNELKQVQVGLHDKIADQRDAVEELRAERTRLEFVLENNLYRRRTELTQVNNTLDSGEgsgGMGGGVTTNTMLQEQAERQLEERRLAAREAIRDADELEAKLEEIRKAEEELKNELISAKNDLERLKTVDNKNTRDLDDAQRRAETLMGKKSLNIGRRDNYMRKIQELGSLPPDSELRHYK--NQNISDLERSLERVSKKLKKYSHVNKKAFDQYVNFSEKRESLMDRKDELDRGAEKVKELVESLDRKKDEAINRTFRGVSKHFAEVFKELVPLGAGELIMRtAIDEAldrenededpdsndgesagkkrlenpdvsLYRGVGIKVRFSAVgENFIMSQLSGGQKALVAMALIFAIQRCDPAPFYIFDELDQALDSTYRQAVANVIYNHANNpdnpTQFITSTFRPELVRIAKNCYGISHQNK-VSS 1220
                  89**************9966999999******************************************97..567899*************7555555.66666678899***********************9865499***************************************************************************************9999999888762222222222222245555666666666666666777777777777777777777777777778888888889999999999999999999999999999999999999999999999999999999999999998885.45556666677777777888888888888888888888888888888888888888888888888888888899999999999999999999999999999999999999999999999999988888877641022222222.....22333333....67777777776379*********************************************7.....555555566778889**************************************999998..6******************99966666555551222333555555555666666666666666666666666666666666666666666666666666666666666654256777777888888888777751344555555414566777777778888888888888888887777666665555554444444444444331113445566777778889999999999999********************************************************99999999999************************9..88899********************************************************************************************997344444799999***********************999999999998751566789*************************************998888888886665444444**********************99986.665 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   2.9e-05      0.04       1      53 [.       1      50 [.       1      77 [. 0.84
   2 ?   -8.1  14.4         3   4.1e+03     264     475 ..     157     370 ..     138     381 .. 0.61
   3 ?   -6.4  13.8         3   4.1e+03     362     498 ..     347     491 ..     325     507 .. 0.44
   4 ?   -1.8  11.1      0.12   1.6e+02     362     529 ..     659     821 ..     626     839 .. 0.64
   5 ?   -2.1  16.9      0.15   2.1e+02     207     519 ..     755    1066 ..     734    1082 .. 0.63
   6 ?    5.6   0.0   0.00072      0.98     544     597 ..    1126    1178 ..    1122    1185 .. 0.86
   7 ?   -4.2   0.3      0.64   8.8e+02     454     486 ..    1242    1274 ..    1217    1276 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.9e-05
   TIGR03185  1 milkqleLenlGayrgrqevdLsvssekpiiLlgglNGaGKTTlLdaiqLaLY 53
                m +kq+++ n+  +r + e+     +  + +L  g NG+GK  l+da+q +L 
  MMETSP1061-20121228|5787_1  1 MHIKQITISNFRSFRQQPEIHPFA-ATTNCVL--GRNGSGKSNLFDAVQFVLL 50
                89************9888886433.3367777..9***************996 PP

  == domain 2    score: -8.1 bits;  conditional E-value: 3
   TIGR03185 264 reelerqqkeleaklkavraelrelaadllPLlliknllssvkaqlrkeeqakqnqliqevleerdkellelLpklalpae..lvkelaaelaelakka...ktdleiplllsdselaqlevliekvkrekqdaksqLlkeleeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkelkektkqkeda 475
                 r el +q++       + +++l+++ ++   +  i  +l ++ + l++ +  k++  + + l +  k l  +L + +l++   ++++++++++  +++    +++ + +++ ++++ a l+v  ek+kr+++ +++ L +++++  +  + l  k e  + e  v  ++ + +  ++e+  +e ei+ ++  l++ k ++ e   +l++ +++  +a
  MMETSP1061-20121228|5787_1 157 RLELLQQVAGTTLYEDKKSESLVKMQENSQSIEKIDSILGDIDERLNELQGEKEELTVYQSLDRDRKALEYTLYDKELRKArlVLDNIEHKRVIHLRELtelHEHCKKTHDDIQNADAVLKVKTEKLKRNRN-HRALLEQDRRTAYKLKEDLVLKCE--ELEGMVGMIRDNTKRNQAELESLEGEIHSTQGRLDDKKATLREEEDALRKMEQERDQA 370
                 555555666666666667777777777777777777777777777765555555555555555555556667877777765225677877766544443334555556666666667778888888887777.445555555555444444554333..3345566667777777777777777777777777776666666666665555554444 PP

  == domain 3    score: -6.4 bits;  conditional E-value: 3
   TIGR03185 362 tdleiplllsdselaqlevliekvkrekq..daksqLlkeleeleeelaeldkkietvpdee.kvael....leeleeaeeevakseveieektekleelkeaieelrkelkektkqkedaeel.ervikladkvkktleeFrek 498
                 +d++ +l+  +++l ++e+   +++r+     a++   ke ++ ee  + l+++i +v+ ++ + +++    + +l++  ++++ +e+ ie  + +  + +ea+++l k l+ +++q  +  ++ +++ + a+++ +tl e re+
  MMETSP1061-20121228|5787_1 347 DDKKATLREEEDALRKMEQERDQAARKIDglYARQGRGKEYNSKEERDDSLRQQIREVEGQQsQKQQVlvqqQDALANLRRQIVDLEASIESGKTEGGSKHEALQALHKRLEDRQNQRLKLMDVrKNAWRQAESLTETLAECREA 491
                 3333444444444444444444444433211233344445555555555555555554432212222201112334444444444444444444444445555555555555555554444333134555555555555555544 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 0.12
   TIGR03185 362 tdleiplllsdselaqlevliekvkrekqdaksqLlkeleeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieektekleelkeaieelrkelkektkqkedaeelervikladkvkktleeFrekllerklqkleeeilksfkkLlrKsdlisrlk 529
                  + ++   ++d + ++++++++k + e + +++q  +e++++  e+++ ++ +++v  +e++++l+++ ++  + +++ ev + + ++++ +  ++ e l  ++    +q+ + ++   + +l +++   l++  ++  ++ l++l++  +    k++  +d + +l+
  MMETSP1061-20121228|5787_1 659 RKGALSGGYVDVQKSRIKAYSAKTNAEANFRRAQ--EEHRKVDAEAKQAEQDVANV--SEEISRLQHKQTQLARMIQNQEVGLSQSQSQIGQYSKQAERLESQIIPSLEQNLEDFQF-DIARLREEIGTELTSSLSEGERSALNELKQVQVGLHDKIADQRDAVEELR 821
                 5555555666777777777777777766644444..55677777777777765555..46677888888888888888888888888888887777777777776666666666665.55666666666666666666666666666666666666666666666665 PP

  == domain 5    score: -2.1 bits;  conditional E-value: 0.15
   TIGR03185  207 ieseiealeaelkeqeekievlaqei.aalrkeleeaerkleslekkfe.seGgelaeereelerqqkeleaklkavrael.relaadllPLlliknllssvkaqlrkeeqakqnqliqevleerdkellelLpklalpaelvkelaaelaelakkaktdleiplllsdselaqlevliekvkrekqd...aksqLlkeleeleeelaeldkkietvpdeekvaelleeleeaeeevakseveieekteklee.lkeaieelrkelkektkqkedaeelervikladkvkktleeFrekllerklqkleeeilksfkkLl 519 
                   ++ i  le++l++ + +i  l++ei  +l++ l+e er+  +  k+++     ++a++r+ +e    el+a++ +++  l  +l  +   L+ ++n l+s +           n ++qe+ e++ +e   + ++ a+    ++el+a+l+e+ k+ +++l+  l +++++l++l+  ++k  r++ d   + + L+ ++  +    ++  +ki++  +    +el++  ++   ++ +s   + +k +k ++ +k+a ++  +  ++++       el+r  +  +++ ++l++ +++ ++r    +++++++ fk+L+
  MMETSP1061-20121228|5787_1  755 ESQIIPSLEQNLEDFQFDIARLREEIgTELTSSLSEGERSALNELKQVQvGLHDKIADQRDAVE----ELRAERTRLEFVLeNNLYRRRTELTQVNNTLDSGEGSGGMGGGVTTNTMLQEQAERQLEERRLAARE-AI--RDADELEAKLEEIRKA-EEELKNELISAKNDLERLKTVDNKNTRDLDDaqrRAETLMGKKSLNIGRRDNYMRKIQELGSLPPDSELRHYKNQNISDLERSLERVSKKLKKYSHvNKKAFDQYVNFSEKRESLMDRKDELDRGAEKVKELVESLDRKKDEAINRTFRGVSKHFAEVFKELV 1066
                  2222334444444444444444444422344444444444333222222022223333333332....3333333333222134555556677777777777776666666666666666655544443222222.33..34789*******9995.88899999999999**********99987651114567888788888899999999****99999999999999999999999999999999999955566666655557777777788889998888888888888899999*****************996 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.00072
   TIGR03185  544 gkaidkerLSAGErqilaialLwgLakvsgrrlPviiDtpLgRLDssHrenlve 597 
                  g++  +++LS G + + a+al+ ++ ++    +  i+D +   LDs+ r+++++
  MMETSP1061-20121228|5787_1 1126 GENFIMSQLSGGQKALVAMALIFAIQRCDPAPF-YIFDELDQALDSTYRQAVAN 1178
                  5666789*********************87765.689999999****9998865 PP

  == domain 7    score: -4.2 bits;  conditional E-value: 0.64
   TIGR03185  454 lkeaieelrkelkektkqkedaeelerviklad 486 
                  +  ++  +r  l +k ++k +++e+e ++++++
  MMETSP1061-20121228|5787_1 1242 AVGQVSTTRSSLSKKGNKKRKSNEVETAVEASQ 1274
                  555677788888888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       492  (0.119941); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 1.13u 0.14s 00:00:01.27 Elapsed: 00:00:00.56
# Mc/sec: 3031.04
//
Query:       MMETSP1061-20121228|5790_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-62  209.6   0.0      1e-40  137.5   0.0    3.1  3  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.5   0.0   2.5e-44     1e-40       6     213 ..     136     360 ..     132     363 .. 0.79
   2 !   56.2   0.0   1.2e-19   4.8e-16     215     355 ..     386     535 ..     369     547 .. 0.83
   3 !   12.3   0.0   2.4e-06    0.0098     386     428 ..     587     629 ..     581     637 .. 0.87

  Alignments for each domain:
  == domain 1    score: 137.5 bits;  conditional E-value: 2.5e-44
   TIGR01982   6 eiirvllrygllalvek.ivelsl......lllakllakvskeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgk.pve..elFaefeekPlAaASiaQvhkAvlve.gkeVavKvlRPgiekkieadikllellaklvekllpeakr.l.....rptevvkefektlkeEldlrlEaanaselkenf 213
                  i+  l+++ +l++ +k i+ l l      l+ + + +k  +  a ++ +g+ + + + +lGP +iKlGQ++s R+ ll++e+++ L+ Lqdkvp+  +k+ar+   ++l+  ++e   lF +f ++PlAaAS++Qvh+A+l e g+eVa+Kv+RP +++ +++d +ll+++ak+++++++ + + +       t++ ++ e++l +E+d+r Ea na ++++ f
  MMETSP1061-20121228|5790_1 136 AIMVLLTKQTVLIAASKiIGALPLplplpgLFSKLRRRKERAMIALRQYAGHGFSDGILKLGPLYIKLGQIVSCRPGLLGKEWVDALEDLQDKVPARTGKDARELAYSALEGgKEEfdRLFVDFRSTPLAAASLGQVHRARLREsGNEVAIKVQRPHLRTIYDQDFALLTTIAKWMDRFSSGSGKnIggvgsSWTQIFDDAEEILYREIDYRDEADNAIRFANDF 360
                 566666666666666665433333000000223333333333333467788999999***************************************************998755545579**********************8626*********************************98765423333336899************************99876 PP

  == domain 2    score: 56.2 bits;  conditional E-value: 1.2e-19
   TIGR01982 215 ndkklivPevyweltservltlewidgipvsdleklkeaG...ldlkalaenlvesflkqvlrdgfFHaDlHpGNi...lvakd......gkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairav 355
                 +++ l+ P +y ++  er+l++e++  i+++d++kl++a    +d+ +la++l++  l+q   + fF  D+HpGN+   lv++d      +++++ DfG  ++l++ +   + ei+ +++  d +r +e   ++ ++      a leq  ++v
  MMETSP1061-20121228|5790_1 386 ASEWLRTPYIYANHSNERLLVQEYVPSIKITDTAKLNAANiteVDRIRLADDLARAYLRQFCCHLFFSTDPHPGNLgveLVRTDsstnprPRLVMYDFGQAASLTKGQADGILEIIEAIIDMDVDRSIEAFQKMEVLVD---GADLEQVRGKV 535
                 4567999******************************99755579*******************************555555669999999*************************************99887766654...44444444455 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 2.4e-06
   TIGR01982 386 evqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklikk 428
                 +++ e +++++++  ++Gvg++ldp++d  + a p++ ++  +
  MMETSP1061-20121228|5790_1 587 TLPAEYAFVARAISQMDGVGKSLDPEFDFISSAAPFIVEIKGA 629
                 6788999999***************************988665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 2818.61
//
Query:       MMETSP1061-20121228|5793_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.19
# Mc/sec: 1326.84
//
Query:       MMETSP1061-20121228|5794_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1028.42
//
Query:       MMETSP1061-20121228|5791_1  [L=1051]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1051 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       811  (0.197708); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.19u 0.17s 00:00:01.36 Elapsed: 00:00:00.82
# Mc/sec: 1691.71
//
Query:       MMETSP1061-20121228|5792_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 857.93
//
Query:       MMETSP1061-20121228|5799_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1640.44
//
Query:       MMETSP1061-20121228|5802_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 2137.37
//
Query:       MMETSP1061-20121228|5800_1  [L=891]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 3266.73
//
Query:       MMETSP1061-20121228|5808_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 486.28
//
Query:       MMETSP1061-20121228|5812_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 2097.68
//
Query:       MMETSP1061-20121228|5806_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-13   47.4   1.1    9.9e-10   36.2   0.0    2.7  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    6.4e-13   45.3   0.0    2.4e-09   33.5   0.0    2.4  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    1.3e-08   33.3   0.0    0.00031   19.2   0.0    2.5  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
      6e-06   23.0   0.0    2.1e-05   21.2   0.0    1.7  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    2.3e-05   22.0   0.3      0.005   14.4   0.0    3.1  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00039   16.6   0.0       0.28    7.1   0.0    2.6  3  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1       1.7   1.1e+03      49      69 ..      61      81 ..      55     100 .. 0.50
   2 !   36.2   0.0   1.4e-12   9.9e-10      47     164 ..     345     461 ..     334     469 .. 0.90
   3 !    9.1   0.0   0.00027      0.19      70     128 ..     468     530 ..     462     540 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.7
   TIGR02521 49 kAkenlekAleldpkdadanl 69
                +Ak+  + A+ ++ + +d+ +
  MMETSP1061-20121228|5806_1 61 VAKDRHDAAVRSALEHYDVDQ 81
                445544555444444444433 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 1.4e-12
   TIGR02521  47 lekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNY.GtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralki 164
                  ++Ake+le A++l+p   +++++lA +y++ g+ ekA    ++ l+l++ + ++   Y GtF +q++k++eA++++++ +     ++  +++  +  c+ ++gdte+ +++l++ +++
  MMETSP1061-20121228|5806_1 345 PQTAKEALECAIALNPGFDSPYSVLAQLYENDGHPEKAMTVMEDCLRLANPKSTASSYYlGTFKYQEGKFDEAIKYMQNCLDID--PNDGDALGTLSHCYSNLGDTENEKETLEKITRA 461
                 689********************************************9877766666666******************999865..67889999999************9999998765 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.00027
   TIGR02521  70 alAlyyqqlg....elekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAied 128
                 +l+ +y +lg      e+   +f k+++++pn+  +l N G  L ++k+ ++A   f+  ++d
  MMETSP1061-20121228|5806_1 468 VLGQAYCNLGilnaGAENELSYFAKSIEVEPNSLPALHNLGNALARRKQWDQAVGVFKLVVQD 530
                 55556666664222222233589********************************99987765 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   3.5e-12   2.4e-09     460     560 ..     358     459 ..     346     473 .. 0.83
   2 !    8.5   0.0   0.00013     0.086     486     528 ..     488     530 ..     466     552 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 3.5e-12
   TIGR02917 460 kqpdnaslynllgaiylgkkdlakAreafekALki.epdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaa 560
                  +p+  s y  l++ y + + ++kA    e  L + +p + ++  +L +  +qe++ d+A++++++ l idp++ +al  L++ +   g++e+ ++ lek  
  MMETSP1061-20121228|5806_1 358 LNPGFDSPYSVLAQLYENDGHPEKAMTVMEDCLRLaNPKSTASSYYLGTFKYQEGKFDEAIKYMQNCLDIDPNDGDALGTLSHCYSNLGDTENEKETLEKIT 459
                 556666889999999999999999999999999984677888888999999999999999999999999999999999999999999999999999999874 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00013
   TIGR02917 486 eafekALkiepdffpAlanLArldlqekniddAkqrfekvlai 528
                 ++f k+ ++ep+++pAl+nL +  +  k+ d+A+  f+ v++ 
  MMETSP1061-20121228|5806_1 488 SYFAKSIEVEPNSLPALHNLGNALARRKQWDQAVGVFKLVVQD 530
                 5789999999999999999999999999999999999888875 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.5e-07   0.00031      38     103 ..     397     459 ..     391     467 .. 0.90
   2 !   11.3   0.0   0.00012     0.084      45     111 ..     469     536 ..     465     544 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 4.5e-07
   TIGR02795  38 apnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevi 103
                 +  ++Y+lG   y+++k+++A+k+ ++ +  +p+     dal  l+ ++++lg++e+ k+tl+++ 
  MMETSP1061-20121228|5806_1 397 STASSYYLGTFKYQEGKFDEAIKYMQNCLDIDPN---DGDALGTLSHCYSNLGDTENEKETLEKIT 459
                 55689************************97665...68************************996 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00012
   TIGR02795  45 lGealyakkkyk.dAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssa 111
                 lG+a+ + + ++  A+++ + + k+ + ++ +  al +lg++l++ +q+++A  +++ v+++++ + +
  MMETSP1061-20121228|5806_1 469 LGQAYCNLGILNaGAENELSYFAKSIEVEPNSLPALHNLGNALARRKQWDQAVGVFKLVVQDFATTRE 536
                 78999998876515677777777888888888899999999999999999999999999999998876 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.1e-08   2.1e-05     345     431 ..     343     430 ..     336     466 .. 0.90
   2 ?   -1.2   0.0      0.18   1.3e+02     424     462 ..     492     530 ..     444     549 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.1e-08
   TIGR00990 345 gkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkk.dsedsdiyyhraqlhfikgefaeaakdydksidldpd 431
                   ++ a++ l+ +i l+P++   y   a +  + g+++ka   ++  l++ +++ +   y+ + +++  g+f+ea k  + + d+dp+
  MMETSP1061-20121228|5806_1 343 TPPQTAKEALECAIALNPGFDSPYSVLAQLYENDGHPEKAMTVMEDCLRLaNPKSTASSYYLGTFKYQEGKFDEAIKYMQNCLDIDPN 430
                 56899*******************************************97367777778889************************97 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.18
   TIGR00990 424 ksidldpdfifsyiqlavlqyklgsiassealfrrakkk 462
                 ksi+++p+ + +   l+    +  + +++  +f+ ++++
  MMETSP1061-20121228|5806_1 492 KSIEVEPNSLPALHNLGNALARRKQWDQAVGVFKLVVQD 530
                 555555555555555555555555555555555555555 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.019        13      64     121 ..     341     398 ..     324     404 .. 0.86
   2 !   14.4   0.0   7.3e-06     0.005      44     113 ..     390     459 ..     381     468 .. 0.89
   3 ?    2.4   0.0     0.037        25       8      45 ..     491     528 ..     485     562 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.019
   TIGR02552  64 alkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekee 121
                 ++   ++A +a + a al++   +p+  +a+ + + g +e+A+  ++ ++++a+ k++
  MMETSP1061-20121228|5806_1 341 EKTPPQTAKEALECAIALNPGFDSPYSVLAQLYENDGHPEKAMTVMEDCLRLANPKST 398
                 556678999999************************************9999997765 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 7.3e-06
   TIGR02552  44 LaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklai 113
                 L +++p +    + L+    + ++++eAi+  + ++ +d++d +++  ++ c+ +lg++e+ +++L+   
  MMETSP1061-20121228|5806_1 390 LRLANPKSTASSYYLGTFKYQEGKFDEAIKYMQNCLDIDPNDGDALGTLSHCYSNLGDTENEKETLEKIT 459
                 7777888888888899999999***************************************999998665 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.037
   TIGR02552   8 ksllgldeeqleaiYalAYnlyqqgkyeeAeklFqlLa 45 
                 +++ +++++ l a+++l+ +l  ++++++A+ +F+l +
  MMETSP1061-20121228|5806_1 491 AKSIEVEPNSLPALHNLGNALARRKQWDQAVGVFKLVV 528
                 56778899999999999999999999999999998765 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.32   2.2e+02     203     237 ..      34      66 ..      24      80 .. 0.75
   2 !    7.1   0.0   0.00041      0.28      67     153 ..     377     465 ..     368     478 .. 0.73
   3 !    6.5   0.0   0.00062      0.42      67     120 ..     482     535 ..     478     587 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.32
   TIGR03939 203 apalaarlakqhpelftdeekrrleldqaaelvrl 237
                 +p+    +a q+p++++ +++ rl+ + ++   r 
  MMETSP1061-20121228|5806_1  34 MPVF--VSAVQRPDWLSHVDRDRLQNYMSVAKDRH 66 
                 5555..467899************99988766555 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00041
   TIGR03939  67 gedkevidvyery.sl.vglparelealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsd 153
                 g  +++++v+e++ +l ++ +  +  +l+    +e+++d+A+++ ++ l  dP++ d+l  l +  ++ g++e+ +++l++   + + +
  MMETSP1061-20121228|5806_1 377 GHPEKAMTVMEDClRLaNPKSTASSYYLGTFKYQEGKFDEAIKYMQNCLDIDPNDGDALGTLSHCYSNLGDTENEKETLEKITRAPGVS 465
                 555666666666653313334444445555556789**********************************9999999999988555544 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.00062
   TIGR03939  67 gedkevidvyeryslvglparelealAkAaRnekqwdkAlelyrkllqrdPknp 120
                 g ++e    ++++++++ + ++l++l++A+ ++kqwd+A+ +++ + q   + +
  MMETSP1061-20121228|5806_1 482 GAENELSYFAKSIEVEPNSLPALHNLGNALARRKQWDQAVGVFKLVVQDFATTR 535
                 555666666677799999*************************99988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 2045.83
//
Query:       MMETSP1061-20121228|5810_1  [L=1712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1712 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.12s 00:00:00.81 Elapsed: 00:00:00.43
# Mc/sec: 5255.01
//
Query:       MMETSP1061-20121228|5813_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 2309.81
//
Query:       MMETSP1061-20121228|5811_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1897.91
//
Query:       MMETSP1061-20121228|5817_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1359.49
//
Query:       MMETSP1061-20121228|5816_1  [L=700]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.43
# Mc/sec: 2148.66
//
Query:       MMETSP1061-20121228|5822_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.5    4.8   8.6        2.6    4.7   6.0    1.0  1  TIGR00414 serS: serine--tRNA ligase
        8.8    3.3   9.2        9.4    3.2   6.4    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   6.0    0.0013       2.6      32     103 ..       5      73 ..       1      83 [. 0.59

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0013
   TIGR00414  32 lselddklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekl 103
                 +s l++k ++++  ++elq+++++l ++ + +++e  d+ ++l  elke++ + ++ +  +     ele++ 
  MMETSP1061-20121228|5822_1   5 ISILEAKDQQHQIDLKELQARETQLVEKANIQQHEAIDREQQLLSELKEERAQSQKDKDTF---TLELENLR 73 
                 6677778888888888888888888777776666666655555555555554444433333...33333333 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   6.4    0.0046       9.4      64     137 ..       8      81 ..       2      84 .] 0.88

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0046
   TIGR03752  64 lvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqk 137
                 l a+ ++++ +l++l++  ++l ++ +  +++  + ++++ ++l+ e+ + +k+k++ + e ++l++++ +l++
  MMETSP1061-20121228|5822_1   8 LEAKDQQHQIDLKELQARETQLVEKANIQQHEAIDREQQLLSELKEERAQSQKDKDTFTLELENLRNSIGTLES 81 
                 667889999999***********999988889899999******************999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       340  (0.0828864); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.09u 0.19s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 554.35
//
Query:       MMETSP1061-20121228|5826_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   15.7   0.0     0.0039   15.1   0.0    1.3  1  TIGR00586 mutt: mutator mutT protein
     0.0067   13.8   0.0       0.01   13.3   0.0    1.2  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.9e-06    0.0039      11      62 ..      30      84 ..      21      89 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.9e-06
   TIGR00586 11 iirnenneifitrraad.adlanklefPGGkieaGetpeqav..vrelqeevgit 62
                ++     +++ t r  +  +  +++ fPGG+ ++G+  ++     re +eevg+ 
  MMETSP1061-20121228|5826_1 30 VLVSSDAHVLFTLRSRNlRSHPGQVSFPGGRQDPGDNGDDVFtaLRETKEEVGLD 84
                5555666677776665525677899*************9975227*******985 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   4.9e-06      0.01      25      74 ..      26      83 ..      11      90 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.9e-06
   TIGR02705 25 khvlviprykdqwlltehkk..R...G.lefPGGkveegetske..aaiRevleetGa 74
                  vlv+   + + l+t  ++  R   G + fPGG+ + g++  +   a Re +ee G 
  MMETSP1061-20121228|5826_1 26 ASVLVLVSSDAHVLFTLRSRnlRshpGqVSFPGGRQDPGDNGDDvfTALRETKEEVGL 83
                578899999999999854321143332479**********999944589******995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 718.02
//
Query:       MMETSP1061-20121228|5827_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 433.68
//
Query:       MMETSP1061-20121228|5828_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.3    4.4  10.4        2.3    4.4   7.2    1.0  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   7.2   0.00056       2.3      72     124 ..      35      88 ..      17      91 .] 0.73

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.00056
   TIGR03490  72 deeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqadepnnd.hadqknnn 124
                  e +   + +++++++s++k+++  p ++++ p + p+a+++ nd  +d++n+n
  MMETSP1061-20121228|5828_1  35 YEVDRRGSVVDNEEEASNDKHKPAIPPRPNPTPSDTPNANDNTNDnTNDNTNDN 88 
                 455556678899999999999999999999999988888777555355666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 414.17
//
Query:       MMETSP1061-20121228|5830_1  [L=685]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.74
# Mc/sec: 1221.79
//
Query:       MMETSP1061-20121228|5836_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   12.2   0.0       0.04   11.7   0.0    1.2  1  TIGR02480 fliN: flagellar motor switch protein FliN


Domain annotation for each model (and alignments):
>> TIGR02480  fliN: flagellar motor switch protein FliN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.9e-06      0.04      36      66 ..      86     116 ..      63     123 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.9e-06
   TIGR02480  36 eLdkkagepldilvngrliarGEvvvvedkf 66 
                  Ld++ +++ +ilv  r i +G v+ +e+ +
  MMETSP1061-20121228|5836_1  86 ILDRSCEQKGNILVATRNISKGQVIFTEKAL 116
                 59***********************999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1180.96
//
Query:       MMETSP1061-20121228|5837_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 3252.89
//
Query:       MMETSP1061-20121228|5835_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 1996.34
//
Query:       MMETSP1061-20121228|5838_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 597.09
//
Query:       MMETSP1061-20121228|5831_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-59  195.5   0.4    7.3e-59  195.2   0.3    1.0  1  TIGR01025 rpsS_arch: ribosomal protein S19
    2.1e-14   51.4   0.1    3.5e-14   50.7   0.0    1.3  1  TIGR01050 rpsS_bact: ribosomal protein S19


Domain annotation for each model (and alignments):
>> TIGR01025  rpsS_arch: ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.2   0.3   3.6e-62   7.3e-59       2     134 ..      15     147 .]      14     147 .] 0.99

  Alignments for each domain:
  == domain 1    score: 195.2 bits;  conditional E-value: 3.6e-62
   TIGR01025   2 kkefryrGytleelldmsleelvkllparqrrklkrGltrkqkkllkklrkakkeatkgkkpevvrthlrdmiilpemvGlvvgvynGkefveveikpemiGhylgefaltrkkvkhgapGvGatrsskfvpl 134
                 +++f+yrG++l++lld++ +el+ l+ ar rr+++rGl+rk ++l+k+lr+akkea+ g+kp+ v+thlr+mii+pem+G+++g+ynGk f  ve+kpemiG yl+efa+t+k+v+hg+pGv a++ ++f+pl
  MMETSP1061-20121228|5831_1  15 FRKFTYRGIELDQLLDLTNDELMDLVCARPRRRMSRGLKRKPMALIKRLRQAKKEAPPGEKPRGVKTHLRNMIIVPEMIGSIIGIYNGKMFCGVEMKPEMIGMYLAEFAITYKPVRHGRPGVSAAHQTRFIPL 147
                 79*********************************************************************************************************************************97 PP

>> TIGR01050  rpsS_bact: ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   1.7e-17   3.5e-14       1      83 [.      48     131 ..      48     138 .. 0.84

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 1.7e-17
   TIGR01050   1 msRslkkgpfvdkkllkkvekln.ekekkkviktwsRrstilPelvgltievynGkkfipvyiteemvGhklGefaptrkfkgh 83 
                 msR lk+ p    k l++ +k     ek + +kt+ R  +i+Pe++g  i +ynGk f  v ++ em+G  l efa t k   h
  MMETSP1061-20121228|5831_1  48 MSRGLKRKPMALIKRLRQAKKEApPGEKPRGVKTHLRNMIIVPEMIGSIIGIYNGKMFCGVEMKPEMIGMYLAEFAITYKPVRH 131
                 8999999998655555544444425677889***********************************************887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|5834_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 1785.52
//
Query:       MMETSP1061-20121228|5840_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.42
# Mc/sec: 2067.83
//
Query:       MMETSP1061-20121228|5839_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2234.39
//
Query:       MMETSP1061-20121228|5841_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1288.47
//
Query:       MMETSP1061-20121228|5846_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 965.92
//
Query:       MMETSP1061-20121228|5847_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 648.47
//
Query:       MMETSP1061-20121228|5845_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1127.91
//
Query:       MMETSP1061-20121228|5845_2  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-08   30.8   0.0    1.4e-07   29.6   0.0    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
      3e-06   24.8   0.4    5.9e-06   23.9   0.0    1.5  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
  ------ inclusion threshold ------
      0.012   13.0   0.0       0.02   12.2   0.0    1.4  1  TIGR03464 HpnC: squalene synthase HpnC


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     1e-10   1.4e-07      17      81 ..      73     142 ..      66     149 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1e-10
   TIGR01126  17 vlvefyaPWCGhCkklaPeyeklakelkk..eeekvkiakvdatae...kelaskfkvsgfPtlkffkkg 81 
                 + v fya W    ++laP ++++a+ l++  +++k+ +a  d++ +    +++++ +v+ +Ptl+f+ +g
  MMETSP1061-20121228|5845_2  73 LAVMFYARWDTNSQRLAPYWNQIAAILDAgsSQSKLIMALFDCELNaahMQMCESAGVTHYPTLMFIGSG 142
                 6699*********************9986225678999*****97733367788999*********9876 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   4.3e-09   5.9e-06      23      86 ..      75     143 ..      68     150 .. 0.73
   2 ?   -2.5   0.1      0.45   6.1e+02     141     173 ..     274     306 ..     239     368 .. 0.52

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 4.3e-09
   TIGR01130  23 veFYAPWCGHCksLaPeYekAAeelkkksp..kvklakvDatee...kelaqkygvsGyPtLkifrnge 86 
                 v+FYA W    ++LaP +++ A++l + s+  k+ +a  D+  +   +++++  gv+ yPtL ++ +g 
  MMETSP1061-20121228|5845_2  75 VMFYARWDTNSQRLAPYWNQIAAILDAGSSqsKLIMALFDCELNaahMQMCESAGVTHYPTLMFIGSGP 143
                 788888888888888888888888886554115666888886554447888888888888888887765 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.45
   TIGR01130 141 selvetflevaeklrdkfkavasssdeaalkkl 173
                 +++ e+ l  +++ +d+f+ ++++++ +++kk+
  MMETSP1061-20121228|5845_2 274 ATMIESVLFGDKNSTDMFSLLHENDAWKDTKKY 306
                 233333333334444444433333333333333 PP

>> TIGR03464  HpnC: squalene synthase HpnC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.5e-05      0.02     107     144 ..     317     357 ..     240     358 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.5e-05
   TIGR03464 107 tfeelldYCrrSAnPvGrlvLd...lagasdeerlalsdai 144
                 t e  ldYC+r A+PvG  v+d    a+++++e +a+sd+i
  MMETSP1061-20121228|5845_2 317 TLEVSLDYCQRLADPVGTKVVDdliAANKTTQELVAASDNI 357
                 3344489**********988653224577888999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 2187.97
//
Query:       MMETSP1061-20121228|5858_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 413.97
//
Query:       MMETSP1061-20121228|5854_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1341.89
//
Query:       MMETSP1061-20121228|5861_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 672.52
//
Query:       MMETSP1061-20121228|5865_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 711.27
//
Query:       MMETSP1061-20121228|5868_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 319.55
//
Query:       MMETSP1061-20121228|5869_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00029   18.1   0.0    0.00029   18.1   0.0    1.1  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     7e-08   0.00029     138     175 ..       1      38 [.       1      78 [. 0.80

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 7e-08
   TIGR00005 138 ktekaleeLkeqlkektvkkeYvalvkgefkskegtvd 175
                 kt+ a+++L ++++ +t +k+Y+a+v g ++ k+  v 
  MMETSP1061-20121228|5869_1   1 KTKGAARRLAQEFEYRTARKTYTAMVYGIPRDKDAAVP 38 
                 7899************************8777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 555.45
//
Query:       MMETSP1061-20121228|5866_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1588.95
//
Query:       MMETSP1061-20121228|5872_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2062.94
//
Query:       MMETSP1061-20121228|5871_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   14.6   0.1     0.0055   14.1   0.0    1.2  1  TIGR02771 TraF_Ti: conjugative transfer signal peptidase TraF


Domain annotation for each model (and alignments):
>> TIGR02771  TraF_Ti: conjugative transfer signal peptidase TraF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.3e-06    0.0055      81     154 ..      45     124 ..      37     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.3e-06
   TIGR02771  81 fepllKrvlalkGdrvtvradvvav..ngkllpvskaeavdsegralaplaegvvpkg....lllvsdtsptSFDsRYfG 154
                 fe+ l   + + G + ++ a++v++  + ++l ++ + +   + r+l+ l++ ++ k     +l v + s +S+  RYf 
  MMETSP1061-20121228|5871_1  45 FEKYLHDKIKIGGKTAALAANNVVItrDRTKLTIASPAELKFSKRQLKYLSKRYLKKQqlrdYLRVVAASKNSYEMRYFS 124
                 666677777899******99999994445678889999999999********9999988999****************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 707.46
//
Query:       MMETSP1061-20121228|5870_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1893.10
//
Query:       MMETSP1061-20121228|5875_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|5873_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-27   91.8   0.3    2.6e-24   83.5   0.1    2.9  2  TIGR02692 tRNA_CCA_actino: CCA tRNA nucleotidyltransferase
    1.7e-22   77.6   0.1    4.5e-20   69.7   0.0    2.1  2  TIGR01942 pcnB: poly(A) polymerase


Domain annotation for each model (and alignments):
>> TIGR02692  tRNA_CCA_actino: CCA tRNA nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.1   1.3e-27   2.6e-24      13     240 ..      78     329 ..      67     335 .. 0.75
   2 !    4.2   0.0    0.0015       3.1     414     441 ..     535     562 ..     514     585 .. 0.79

  Alignments for each domain:
  == domain 1    score: 83.5 bits;  conditional E-value: 1.3e-27
   TIGR02692  13 advlaelaaafaakghelylvGGsvrdallgrlgkdldfttdar.....peevkkilreya.......davwdtGi.........afGtvsaekddeqveittfrsdaydrtsrkpevefGdtleedlirrdftvnalavrvaadgslefvd.plgGledll.akvldtpaapeksfsddplrmlraarfvsqlgfevaervlaa..lkemaerier.isaervraeldklllgee..peegidllvetglaevvl 240
                 ad  +e    +a+k+ ++ + GG vrd +lg +++d+d++ d+       ++vk++ ++         d++ ++G+         +  t  +++ ++ v+ +  r ++y ++sr p+   G  le+   rrd t+nal  +++++   ++ d    Gledll +kv++tp    ++f ddplr+lr  rf+ + ++e+++++++a  l ++ +++ r +s erv +el+ +l g++  p++++dl+++  l+  vl
  MMETSP1061-20121228|5873_1  78 ADAWTEGKLSLAKKTVQIRIAGGWVRDKILGLQTHDVDIALDTCtgvefAQAVKEFYEKGHanskdakDKIGKIGViaanpaqskHLETACVRIFGNDVDFSNLRHETYAEHSRIPDTVMGTPLED-SYRRDCTMNALYYNLNTH---SIEDwTRRGLEDLLkTKVVHTPLDAVQTFRDDPLRVLRVIRFAVRYEMELSDEIKSAsqLPQVHNELRRkVSRERVGNELEGMLSGKHanPAKAMDLICKLHLGGSVL 329
                 55555556677899999********************9988865221224566666544220111111334444421111111112344555566777888999********************85.67*************999...666624579*99862689**********************************9998844668888886449**************9754499*******998887765 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0015
   TIGR02692 414 vrpdldGneimeildikaGpevGkayky 441
                  +p ++G++++ +l+++ GpevG  ++ 
  MMETSP1061-20121228|5873_1 535 KKPLMNGKDLIRVLELNRGPEVGVYMEE 562
                 58999******************87765 PP

>> TIGR01942  pcnB: poly(A) polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0   0.00053       1.1      30      56 ..      93     119 ..      86     142 .. 0.87
   2 !   69.7   0.0   2.2e-23   4.5e-20     102     222 ..     187     310 ..     148     328 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00053
   TIGR01942  30 yeaYivGGavRDLllgiePKDFDvats 56 
                  +  i GG vRD +lg++  D D+a +
  MMETSP1061-20121228|5873_1  93 VQIRIAGGWVRDKILGLQTHDVDIALD 119
                 577799******************976 PP

  == domain 2    score: 69.7 bits;  conditional E-value: 2.2e-23
   TIGR01942 102 naegrilkdnvyGsleEDalRRDFtvnaLyYDpskeeildya.gGveDl.karrlrligdpeerykeDPvRmLRalrlaakleftidektakp..iresvslLk.eisaaRlfeEilKllfsGkaa 222
                  +++ri  d v G+  ED  RRD t+naLyY+ ++++i d++  G+eDl k + + +  d+ + +++DP R+LR++r+a+++e++++ +++ +  + +  ++L+ ++s  R+ +E+  +l sGk a
  MMETSP1061-20121228|5873_1 187 AEHSRI-PDTVMGTPLEDSYRRDCTMNALYYNLNTHSIEDWTrRGLEDLlKTKVVHTPLDAVQTFRDDPLRVLRVIRFAVRYEMELSDEIKSAsqLPQVHNELRrKVSRERVGNELEGML-SGKHA 310
                 346666.577******************************9746****73777888999***************************9987654226788888853789999999976655.55543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 2808.18
//
Query:       MMETSP1061-20121228|5874_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2234.71
//
Query:       MMETSP1061-20121228|5876_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 539.96
//
Query:       MMETSP1061-20121228|5878_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 507.12
//
Query:       MMETSP1061-20121228|5877_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 884.82
//
Query:       MMETSP1061-20121228|5881_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|5879_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1443.63
//
Query:       MMETSP1061-20121228|5882_1  [L=732]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13   10.5   1.2        0.3    9.3   0.5    1.9  2  TIGR03685 L21P_arch: 50S ribosomal protein L12P
        3.9    5.8   6.4        1.6    7.0   0.1    3.1  3  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.5   0.00015       0.3      65     103 ..     422     460 ..     399     461 .. 0.70
   2 ?   -2.8   0.0      0.83   1.7e+03      33      52 ..     665     684 ..     664     718 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00015
   TIGR03685  65 aaaaaaaaeaaeeekeeeeeeeeekeeeeeealegLgaL 103
                 +++a+ +++ + +++++++++++++e+++e++++g g L
  MMETSP1061-20121228|5882_1 422 TTSAPIPQTVESDDDDDDDDNDDDDENDDESDADGFGRL 460
                 345566677777777788899999999999999999976 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.83
   TIGR03685  33 vdearvKalvaaLedvdiee 52 
                 v e  +K   aa+ ++d+++
  MMETSP1061-20121228|5882_1 665 VTEQDIKQTFAAFRKLDVNN 684
                 66788899999988766643 PP

>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0008       1.6      23      57 ..     109     147 ..     103     181 .. 0.66
   2 ?   -0.9   0.2      0.22   4.6e+02      64      87 ..     190     213 ..     168     219 .. 0.76
   3 ?   -0.1   0.1      0.13   2.6e+02      24      43 ..     229     248 ..     217     256 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0008
   TIGR04104  23 kkkikCpnCgek..qyltaksrkk..svlllliplllll 57 
                 +  ++CpnC+++  q++t +s+ k   +  ++i+l +++
  MMETSP1061-20121228|5882_1 109 YPTFVCPNCNTRqrQFFTVSSAPKhnESAGMFISLGFAT 147
                 66899****986225788888777664444444443333 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.22
   TIGR04104  64 lsiililllyiillllivlltpfl 87 
                  +ii  +++y++++++++ll  ++
  MMETSP1061-20121228|5882_1 190 AKIICSIYIYFGVAFIGLLLGSYI 213
                 578888999999999998886665 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.13
   TIGR04104  24 kkikCpnCgekqyltaksrk 43 
                 +   CpnC     +   s++
  MMETSP1061-20121228|5882_1 229 QIRACPNCTRIRNIRYASER 248
                 45569**9987766655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.39
# Mc/sec: 2477.33
//
Query:       MMETSP1061-20121228|5890_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   13.4   0.1      0.014   13.3   0.0    1.0  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   0.0   3.4e-06     0.014     117     151 ..      19      53 ..       7      55 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.4e-06
   TIGR00714 117 aalvealkeqdyaaAakytskLkylrkLaseleel 151
                 +   ++  e ++a+A k++ +L+y+++L + l+e 
  MMETSP1061-20121228|5890_1  19 NPKRNSNSEATLAEARKLVAQLQYWNRLDETLREA 53 
                 55556778899*******************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|5885_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.72    5.9   7.8       0.79    5.8   5.4    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.4   0.00019      0.79     298     411 ..     411     528 ..     188     535 .] 0.57

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00019
   TIGR00934 298 rriqekikrrlstssiekns......qqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkda 411
                  +++++++ rl   ++           q++ ++ k ++ dds   ++e +kt  + e++  ++  ++    +  ++++k+ k+ kk++ +++ ++k+ +ks+ + k +++  ++++k ++
  MMETSP1061-20121228|5885_1 411 EKLRDQVEERLKFYETGAAPrrnidvMQDVAKQLKVDAGDDSD-EEMEAVKTPSKKEKKKKDKKRKSTG-GDDSDEEMKTPKKAKKESSDSDEEMKTPKKSEKKAKKEKKSAKKEKKSEK 528
                 3333333333333332222222223323333333333333332.4455555544444444444433332.22222223333333333333333333333333332222222222211111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       389  (0.0948318); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 1908.49
//
Query:       MMETSP1061-20121228|5887_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|5889_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1369.96
//
Query:       MMETSP1061-20121228|5891_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 415.77
//
Query:       MMETSP1061-20121228|5892_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   13.9   0.1      0.048   10.8   0.0    1.9  2  TIGR02739 TraF: type-F conjugative transfer system pilin assembly protein TraF


Domain annotation for each model (and alignments):
>> TIGR02739  TraF: type-F conjugative transfer system pilin assembly protein TraF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1     0.014        59      41      73 ..     100     132 ..      93     134 .. 0.83
   2 !   10.8   0.0   1.2e-05     0.048     165     189 ..     168     192 ..     158     207 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.014
   TIGR02739  41 kkpkpvplapsqeskklspteqlkllrketkea 73 
                  k ++ p+ p ++s++ s +e ++ +rk  +e 
  MMETSP1061-20121228|5892_1 100 AKDETTPPSPLVSSPPTSSQELMDRIRKDYEER 132
                 577889999999**99*********99988775 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 1.2e-05
   TIGR02739 165 sqklaqvikaFakeygisliavSvd 189
                  q+l+++++aFa++y+ +l+++S+ 
  MMETSP1061-20121228|5892_1 168 TQNLVPIVEAFAEDYRSELLSISLG 192
                 4789*******************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 1967.84
//
Query:       MMETSP1061-20121228|5897_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1003.12
//
Query:       MMETSP1061-20121228|5894_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|5896_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.92    5.6  22.5     0.0025   14.1   5.2    2.2  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
          7    1.9  22.0        9.2    1.5  15.3    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.1   5.2   1.2e-06    0.0025     274     415 ..     170     316 ..      65     324 .. 0.56
   2 ?   -4.3   7.3      0.48   9.8e+02     329     391 ..     317     378 ..     296     412 .. 0.43

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.2e-06
   TIGR02442 274 divlaraaralAAldgrrevteedvreaaeLvlkhRrrrkpfeeeqekeekkleekkeeak...pdeekedes..eekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktr 415
                    ++r ++alA l+ ++e++ + vrea +L  +   + ++++ e  +++++  +    ++   +d + +d++  ++++++++ +++++++g ++++ ++++  ++++++++++++ ++++++ + ++  + ++  +++ G++s t+
  MMETSP1061-20121228|5896_1 170 LESMVRLSEALARLHCSDEISPAFVREAYRLLKTSIIQVETSDVEVDDDDDDDADYGDYDGgipDDDNGNDNDddDNDDDDDDDDDNDDNGGGPESQLPESQGLETQQQQQQQQQQQQQINNPGEYRAEPQRDEPPSEGDGNASGTT 316
                 336899*************************99999999999988444444433333333346422222222221222222333333555666777777666666666665555556666666555555444444677777776655 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 0.48
   TIGR02442 329 kkeeakpdeekedes..eekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagki 391
                 + +ea p++  +d++   e++ke ++   +++ +k+ +kee++k+++++ + s ee ++ +++ +
  MMETSP1061-20121228|5896_1 317 EAAEAAPTAMDTDDDdlLEAKKEPEG---KPKTKKEKSKEEKKKKKKKKTKISFEEYEAITNAIA 378
                 22222222222222212233332222...222333333333333333333333344444444444 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5  15.3    0.0045       9.2     792     922 ..     226     360 ..     154     413 .. 0.42

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.0045
   TIGR00927 792 eeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaee.eGeekededegeieak.ee..vevegdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkveaeeeeee 922
                  + +G i+ + +g+d+++ + ++++ + + +++++   +++  e++G e +++ + ++ + ++ ++ +e  +e + +e  +e +g+ + t   ae +  + + +d+  +ea+++ e k ++++e++ e+++++++
  MMETSP1061-20121228|5896_1 226 GDYDGGIPDDDNGNDNDDDDNDDDDDDDDDNDDNGGGPESQLPESQGLETQQQQQQQQqQQQQINNPGEYRAEPQrDEppSEGDGNASGTTEAAEAAPTAMDTDDDDLLEAKKEPEGKPKTKKEKSKEEKKKKKK 360
                 222223333222222222222222222211111111111111222221111111111101111111111111111111001111111111111122222222222222333333332222222221111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       324  (0.0789859); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 1839.85
//
Query:       MMETSP1061-20121228|5899_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 494.96
//
Query:       MMETSP1061-20121228|5895_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-28   94.5   0.0    1.4e-27   93.9   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    8.6e-09   33.0   0.1    2.6e-08   31.4   0.1    1.7  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.031   10.5   2.9      0.045   10.0   2.0    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.0     1e-30   1.4e-27       2     199 ..     178     368 ..     177     382 .. 0.87

  Alignments for each domain:
  == domain 1    score: 93.9 bits;  conditional E-value: 1e-30
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaa.....dGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevly 199
                 t++  aik +R++   + +++   +Rei++  +++hPni++L+D  e +  +l  v e+  G  l +++ a     +G  + ++ + ++  +LDa++  h++G+vhRDLkP+n +  ++ ++s  k++DFG++    + e+         +  +G+P Y aPe LR    t + D+++ G+i    L G +   G+  ae+++
  MMETSP1061-20121228|5895_1 178 TKQWYAIKSIRKN---KVKKIEVLKREISILREVKHPNIIELVDVFEDPK-YLHLVTELCTGGELFDRIIAksqspEGHYSEHDAASIIRDILDAISYCHSRGIVHRDLKPENFLFLTESEDSPIKIIDFGLSRHKDENEEP-------MKTKVGTPYYVAPEVLRRQ-YTEACDVWSIGVITYILLCGYPPFYGDNDAEIFM 368
                 778889*****99...678888999********************99777.**********977766654423333899************************************99999999*********9877766662.......23358************85.7999**********999***99999999999875 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   1.9e-11   2.6e-08      68     144 ..     222     314 ..     177     318 .. 0.70

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.9e-11
   TIGR03724  68 dpeekkivmeyiegkklkdlleekel............ellkevGelvgklHkagivhgDlttsNiiv....kddklyliDfGLgkkskeved 144
                 dp+  ++v e   g +l d + +k++            ++++++ ++++ +H+ givh Dl ++N+++    +d+ + +iDfGL+++++e e+
  MMETSP1061-20121228|5895_1 222 DPKYLHLVTELCTGGELFDRIIAKSQspeghysehdaaSIIRDILDAISYCHSRGIVHRDLKPENFLFltesEDSPIKIIDFGLSRHKDENEE 314
                 5555555555555554444333333335555666666799**************************996543377799*********999875 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.0   3.3e-05     0.045     321     437 ..      78     197 ..      53     205 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.3e-05
   TIGR02442 321 keekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavska.r.argasGrrsktrs.dkrgryvkaernreeaddlav 437
                  +++++++++++++++++ +d+++ +e+++s ++++++ +  +e++ ++  ++ +++  a+++ ++ ++  ++v++    +a +  +g+ G   k ++ ++++ y+ ++++++++++++v
  MMETSP1061-20121228|5895_1  78 GQQQQQQQQQQQQQQHPDDPDNQALQESSSSSHTHTHNHEILEESSINSFCPQYQQTLYATDSCVQITEALTDVRVKYHVNAkElGHGHYGVVRKCMNrATKQWYAIKSIRKNKVKKIEV 197
                 234444445555555556666653344443344433334445555555555565666556777777777777777766665534699999988888887888888888888889988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 2307.92
//
Query:       MMETSP1061-20121228|5901_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1085.91
//
Query:       MMETSP1061-20121228|5905_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.53    6.4   6.3       0.55    6.4   4.3    1.0  1  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC


Domain annotation for each model (and alignments):
>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   4.3   0.00013      0.55     141     194 ..       2      55 ..       1      57 [] 0.91

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00013
   TIGR01494 141 lallllallvfllvlielktflkiilralillviaiPiaLpvavtialavgdkr 194
                 la+l + ++++++  + +  + ++++ a +++++ +P aL v++ i +a++++r
  MMETSP1061-20121228|5905_1   2 LAILSFSVATVAIHGCLVAAVSVSAVAARAVASSPVPAALAVVIAISIAISIAR 55 
                 7889999999999999999999***************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 341.97
//
Query:       MMETSP1061-20121228|5904_1  [L=917]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 3458.11
//
Query:       MMETSP1061-20121228|5907_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 300.39
//
Query:       MMETSP1061-20121228|5906_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 961.05
//
Query:       MMETSP1061-20121228|5909_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|5908_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1462.44
//
Query:       MMETSP1061-20121228|5910_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1747.28
//
Query:       MMETSP1061-20121228|5913_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.17
# Mc/sec: 838.52
//
Query:       MMETSP1061-20121228|5914_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.1   2.8       0.02   12.0   2.0    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
       0.14    8.7   8.7       0.14    8.6   6.0    1.0  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   2.0   9.6e-06      0.02      36      95 ..      15      76 ..       4      77 .] 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.6e-06
   TIGR03752 36 dkalaelspeelkalgiegdtpedtlrtlvaelke..lrkelaklekeNeklkkenerlkkr 95
                ++ ++    ++ k++ ++ d  +  +rtl  ++k+   ++++a+ +++N+ +++++++ +++
  MMETSP1061-20121228|5914_1 15 GNPQKAKELQPPKKTSVDTDAVRKAIRTLSVKNKDapFQQKFAAWQQQNNLQQQQQQQQQQQ 76
                3444445556678999*************999987335899999999999888777776664 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   6.0     7e-05      0.14      45     101 ..      19      74 ..       4      77 .] 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 7e-05
   TIGR01645  45 aakillGlsklsserkddiqkakkameqsikqvllkqtlahqkqqlenqqrqvqrqq 101
                  ak  l  +k +s   d+++ka +++ +  k   ++q +a  +qq + qq+q q+qq
  MMETSP1061-20121228|5914_1  19 KAK-ELQPPKKTSVDTDAVRKAIRTLSVKNKDAPFQQKFAAWQQQNNLQQQQQQQQQ 74 
                 333.578899****************************9988888777666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 534.90
//
Query:       MMETSP1061-20121228|5915_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 734.55
//
Query:       MMETSP1061-20121228|5916_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 361.23
//
Query:       MMETSP1061-20121228|5919_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-09   32.7   0.0    4.3e-09   32.5   0.0    1.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      1e-07   28.4   0.0    1.2e-07   28.2   0.0    1.0  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    0.00017   18.3   0.0    0.00021   18.0   0.0    1.1  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
     0.0067   13.4   0.0     0.0083   13.1   0.0    1.1  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
  ------ inclusion threshold ------
      0.017   12.0   0.0      0.025   11.5   0.0    1.3  1  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
      0.023   10.7   0.0      0.029   10.4   0.0    1.1  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   6.3e-12   4.3e-09      15      98 ..       7      96 ..       2     109 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 6.3e-12
   TIGR04121 15 rafQkevleaaeegesglliapTGaGKTlavflpsliela........akekpkkglkvlyitPLkaLakdieraleapieelgleirvelr 98
                ++ Q ++l  a +g +++++apTG+GKTla   p++++l+        +++++++  ++l + P + La++++r  ++ ++ l  +++v   
  MMETSP1061-20121228|5919_1  7 TPVQSQTLGVALSGFDAVVTAPTGSGKTLAFLYPVVAHLLannnndndNNNDNNAESRALVLVPTRELAVQVKRVARSLLAGL--PWKVCAV 96
                67899*********************************99888877655555558899****************999998865..5555555 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.8e-10   1.2e-07      41     106 ..      10      87 ..       4     104 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 1.8e-10
   TIGR03817  41 qaraaelahaGehvvvatgtasGkslayllPvlsalaed............pratalylaPtkalaadqlravkelee 106
                 q ++  +a +G ++vv++ t sGk+la+l Pv++ l ++             +++al l Pt+ la    r+ ++l  
  MMETSP1061-20121228|5919_1  10 QSQTLGVALSGFDAVVTAPTGSGKTLAFLYPVVAHLLANnnndndnnndnnAESRALVLVPTRELAVQVKRVARSLLA 87 
                 67777899***************************99885665555555444999************99999999865 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.1e-07   0.00021       9      48 ..       3      42 ..       1      46 [. 0.92

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.1e-07
   TIGR00614  9 lesfrpvqlevinavlegrdalvvmatGgGksLCyqlpav 48
                +++  pvq +++ ++l+g da+v  +tG Gk L + +p v
  MMETSP1061-20121228|5919_1  3 HDRLTPVQSQTLGVALSGFDAVVTAPTGSGKTLAFLYPVV 42
                678899*******************************987 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.2e-05    0.0083       3      52 ..      24      85 ..      22      94 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.2e-05
   TIGR01587  3 vieAPtGyGKtea......allwalk......likkqkadkvifalPtratanamyerlkel 52
                v+ APtG+GKt a      a l+a++      + +++ +++ ++  Ptr +a  +++ +++l
  MMETSP1061-20121228|5919_1 24 VVTAPTGSGKTLAflypvvAHLLANNnndndnNNDNNAESRALVLVPTRELAVQVKRVARSL 85
                9**********752222225567776666655567778888899999998887777766665 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.7e-05     0.025      18      60 ..      24      83 ..      13      91 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.7e-05
   TIGR03158 18 lntAptGaGKtlaalvevlseeldt.................ialyPtNaLiedqekaik 60
                + tAptG+GKtla l +v+ + l                   + l Pt +L+ + ++ ++
  MMETSP1061-20121228|5919_1 24 VVTAPTGSGKTLAFLYPVVAHLLANnnndndnnndnnaesraLVLVPTRELAVQVKRVAR 83
                569***********9998754322212223445556666666566666666666665555 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   4.3e-05     0.029     267     287 ..      23      43 ..      15      51 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 4.3e-05
   TIGR01407 267 slIeAatGtGKtlgYLLpaly 287
                 +++ A+tG+GKtl++L p+++
  MMETSP1061-20121228|5919_1  23 AVVTAPTGSGKTLAFLYPVVA 43 
                 6899**************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 591.82
//
Query:       MMETSP1061-20121228|5918_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 1688.36
//
Query:       MMETSP1061-20121228|5917_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 2353.81
//
Query:       MMETSP1061-20121228|5920_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 1372.69
//
Query:       MMETSP1061-20121228|5923_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-54  182.8   0.0    3.1e-54  182.3   0.0    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    6.4e-54  181.3   0.0    9.3e-54  180.7   0.0    1.1  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
      8e-45  151.3   0.0    1.1e-44  150.9   0.0    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
      1e-34  118.0   0.0      2e-34  117.0   0.0    1.4  1  TIGR03689 pup_AAA: proteasome ATPase
    1.9e-08   31.1   0.0    3.8e-08   30.2   0.0    1.4  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    2.4e-07   27.9   0.0    3.9e-07   27.2   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00016   18.1   0.8    0.00024   17.5   0.0    1.6  2  TIGR00763 lon: ATP-dependent protease La
    0.00039   17.2   0.1      0.001   15.8   0.0    1.7  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0013   15.6   0.3     0.0068   13.2   0.1    2.1  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
     0.0015   15.4   0.0     0.0034   14.3   0.0    1.5  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
     0.0029   14.0   0.1      0.006   13.0   0.1    1.4  1  TIGR00368 TIGR00368: Mg chelatase-like protein
      0.005   14.6   0.0       0.31    8.7   0.0    2.3  2  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
     0.0057   12.7   0.1      0.067    9.2   0.0    2.1  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
  ------ inclusion threshold ------
      0.018   12.4   0.1      0.034   11.5   0.0    1.3  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
      0.021   11.1   0.1      0.035   10.4   0.0    1.2  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
      0.027   11.5   0.1       0.16    9.0   0.0    2.0  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      0.033   12.0   1.2      0.084   10.7   0.0    2.2  3  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.3   0.0   1.3e-56   3.1e-54     174     405 ..     181     422 ..     165     428 .. 0.91

  Alignments for each domain:
  == domain 1    score: 182.3 bits;  conditional E-value: 1.3e-56
   TIGR01243 174 evtyedigglkeavkkirelvelplkhpelfeklgi.eppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkreevtgevekrvvaqlltlmdglkg.......rgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqi..htrnmplaedv..dldklaevthgfvgadlaalakeaamaalrrllregk 405
                  v + diggl+++++ i el  lpl+ pelf + g+ + p g+llygppgtgkt+laka+a ea+a f+a+   +imsk++ges++ +  if  a++ apsiifide+d+    r+ +     + + a++ltl dg+          g v+v+gatnrp  +d a+ r  r+ r  ei+ p+ +gr++i+ +     + p+++    +l +la+ t g+ g+dl  l + aa  a+r ++re +
  MMETSP1061-20121228|5923_1 181 SVGFSDIGGLDDKKQEIWELAVLPLQQPELFAQSGLlQAPGGILLYGPPGTGKTMLAKAIAKEAEATFLAVKLSKIMSKWFGESNKFIDAIFSLANKLAPSIIFIDELDTFLNPRDGAENSAGNAIKAEFLTLWDGITTsgnshesNGPVMVLGATNRPRHVDDAILR--RLPRMFEINLPNAQGRHQIMSLilQKSGHPVEPSAlkHLPQLAKETAGYSGSDLKELMNCAAHEAVREVMRETS 422
                 5899*******************************6489*************************************************************************************************9751111112567***************9887..89999**************8752266789**998544899******************************9975 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.7   0.0   3.9e-56   9.3e-54     118     351 ..     181     421 ..     159     430 .. 0.88

  Alignments for each domain:
  == domain 1    score: 180.7 bits;  conditional E-value: 3.9e-56
   TIGR01242 118 evsyediGGlekqlreireavelplkkpelfeevGi.eppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllael....dGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmkl.aed...vdleelaklteGasGadlkaivteaGmfaireerdkv 351
                  v + diGGl+++ +ei e  +lpl++pelf++ G+ + p G+llyGppGtGkt+laka+a+e++atf+ v  s+++ k+ Ge  +++  +f la++ apsiifide+d+    r  ++ s    ++  +l l   +    +  ++ g v v++atnr+  +d a+lr  r+ r+ e+ lp+ +Gr +i+ +  +k     e     +l +lak t G sG+dlk ++  a   a+re  ++ 
  MMETSP1061-20121228|5923_1 181 SVGFSDIGGLDDKKQEIWELAVLPLQQPELFAQSGLlQAPGGILLYGPPGTGKTMLAKAIAKEAEATFLAVKLSKIMSKWFGESNKFIDAIFSLANKLAPSIIFIDELDTFLNPRDGAENSAGNAIKAEFLTLWDGIttsgNSHESNGPVMVLGATNRPRHVDDAILR--RLPRMFEINLPNAQGRHQIMSLILQKSGHpVEPsalKHLPQLAKETAGYSGSDLKELMNCAAHEAVREVMRET 421
                 4789*******************************6499*****************************************************************************99999999999999999766522225689999*******************9..9*******************9877775431233111357789999**********************976654 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.9   0.0   4.5e-47   1.1e-44      48     285 ..     177     422 ..     149     459 .. 0.84

  Alignments for each domain:
  == domain 1    score: 150.9 bits;  conditional E-value: 4.5e-47
   TIGR01241  48 eekvkvtfkdvaGideakeelvei.vdfLknpkkftklGa.kiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag.lgggndereq..tL.nqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkv..kla..eevdlkkvarrtpGfsGadlanlvneaallaarknkkevt 285
                   +++v f+d+ G+d++k+e+ e+ v  L++p+ f++ G  + P G+ll+GpPGtGkt+laka+a ea+  f+ +  s+ +  + G   + +  +f  a k aP+iifiDe+D+  + r  +  ++gn  + +  tL + + +  +  e+n  v+vl atnrp  +D+a+lr  r+ r   +++P+ +gr++i+++ ++k    ++  +  +l ++a++t+G+sG+dl+ l+n aa  a+r+  +e +
  MMETSP1061-20121228|5923_1 177 PADISVGFSDIGGLDDKKQEIWELaVLPLQQPELFAQSGLlQAPGGILLYGPPGTGKTMLAKAIAKEAEATFLAVKLSKIMSKWFGESNKFIDAIFSLANKLAPSIIFIDELDTFLNPRDGAeNSAGNAIKAEflTLwDGITTSGNSHESNGPVMVLGATNRPRHVDDAILR--RLPRMFEINLPNAQGRHQIMSLILQKSghPVEpsALKHLPQLAKETAGYSGSDLKELMNCAAHEAVREVMRETS 422
                 45889******************94566***********6489***********************************************************************999986554666666655412552345556666777778*******************..9*******************99887751134422556788**************************98766655 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.0   0.0   8.4e-37     2e-34     178     381 ..     181     375 ..     163     424 .. 0.88

  Alignments for each domain:
  == domain 1    score: 117.0 bits;  conditional E-value: 8.4e-37
   TIGR03689 178 dvtyadiGGldsqieqirdavelPflhkelyreyd.lkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslen.......viviGasnredlidPailrPGrldvkirierPdaeaaadilakylted 381
                  v+++diGGld++ ++i +   lP++++el+ + + l++P G+llyGPPG+Gkt++aka+a+          ea++ fl +k  ++++k+ Ge+++ i +if+ a + a    P ++f+de+d+++  r  G      + +   +l+  dG+ +  n       v+v+Ga+nr   +d ailr  rl     i+ P+a++ ++i++  l+++
  MMETSP1061-20121228|5923_1 181 SVGFSDIGGLDDKKQEIWELAVLPLQQPELFAQSGlLQAPGGILLYGPPGTGKTMLAKAIAK----------EAEATFLAVKLSKIMSKWFGESNKFIDAIFSLANKLA----PSIIFIDELDTFLNPRD-GAENSAGNAIKAEFLTLWDGITTSGNshesngpVMVLGATNRPRHVDDAILR--RLPRMFEINLPNAQGRHQIMSLILQKS 375
                 489****************************9988369*********************985..........45789*************************9998887....99*************96.555557899***********97665555555669******************..9**9****************9888765 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.6e-10   3.8e-08     315     403 ..     223     307 ..     189     314 .. 0.87

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.6e-10
   TIGR03922 315 lllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidka...LggvlFlDEayaLvekrdgakddfGleai 403
                 +ll GPPGtGkt +A+++ak        ++ +   v+ +++++++ ges++  +++   a      ++F+DE+ + ++ rdga++  G+++ 
  MMETSP1061-20121228|5923_1 223 ILLYGPPGTGKTMLAKAIAKE-------AEATFLAVKLSKIMSKWFGESNKFIDAIFSLAnklAPSIIFIDELDTFLNPRDGAENSAGNAIK 307
                 799*****************8.......577888999*****************997655221458**********************9875 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.6e-09   3.9e-07      31      93 ..     221     291 ..     212     428 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.6e-09
   TIGR00635  31 dhvllyGPPGlGkttlakiiake.....lgvklkitsgpalekpgDlaailtaleeg...dvlfiDeihrl 93 
                   +llyGPPG Gkt lak iake     l vkl  + +  +  ++ ++ ++ +l ++   +++fiDe+  +
  MMETSP1061-20121228|5923_1 221 GGILLYGPPGTGKTMLAKAIAKEaeatfLAVKLSKIMSKWFGESNKFIDAIFSLANKlapSIIFIDELDTF 291
                 669*******************933333445666666667777788887777776654449******9764 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   9.8e-07   0.00024     356     384 ..     223     251 ..     186     257 .. 0.78
   2 ?   -2.8   0.3       1.4   3.4e+02     537     585 ..     406     453 ..     384     489 .. 0.42

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 9.8e-07
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrl 384
                 + l+GPPG GKt lak+iAk  + +f+ +
  MMETSP1061-20121228|5923_1 223 ILLYGPPGTGKTMLAKAIAKEAEATFLAV 251
                 569*****************999999766 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.4
   TIGR00763 537 ikkYtreaGVRnLekqiek..ilRkaalklveekekkkeaeeekeeaelkk 585
                 ++  ++ea VR++ ++ ++  ++ + al+  +++e+++    +++  +++k
  MMETSP1061-20121228|5923_1 406 MNCAAHEA-VREVMRETSRraVTTRGALRSKTDQETEQ--GPNSKPKSKSK 453
                 44444444.45544444321122222222222222222..11111111111 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   4.2e-06     0.001      39      67 ..     219     247 ..     216     278 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.2e-06
   TIGR02928  39 rpsnvliyGktGtGKtavtkkvlkeleea 67 
                  p  +l+yG++GtGKt+ +k++ ke+e+ 
  MMETSP1061-20121228|5923_1 219 APGGILLYGPPGTGKTMLAKAIAKEAEAT 247
                 5888*******************999875 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   2.8e-05    0.0068      47      83 ..     220     256 ..     217     264 .. 0.92
   2 ?   -1.0   0.0      0.59   1.4e+02     249     263 ..     281     295 ..     263     322 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.8e-05
   TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikveatkf 83 
                 P  il+ G+ G Gkt +a+ +ak aea f+ v  +k 
  MMETSP1061-20121228|5923_1 220 PGGILLYGPPGTGKTMLAKAIAKEAEATFLAVKLSKI 256
                 778***************************9998885 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.59
   TIGR00390 249 Giifideidkiakkg 263
                  iifide+d   +  
  MMETSP1061-20121228|5923_1 281 SIIFIDELDTFLNPR 295
                 69*******876554 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.4e-05    0.0034     119     193 ..     222     290 ..     214     315 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
   TIGR00382 119 nilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidk 193
                  ill Gp G+Gkt+la+++ake +  f      +   + + Ge       k+++a     +k    ii+ide+d 
  MMETSP1061-20121228|5923_1 222 GILLYGPPGTGKTMLAKAIAKEAEATFLAVK-LSKIMSKWFGES-----NKFIDAIFSLANKLAPSIIFIDELDT 290
                 59*********************99985444.444456677875.....34455555555677777888888876 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   2.5e-05     0.006     214     231 ..     223     240 ..     216     246 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.5e-05
   TIGR00368 214 llllGPPGsGktllakrl 231
                 +ll GPPG+Gkt+lak +
  MMETSP1061-20121228|5923_1 223 ILLYGPPGTGKTMLAKAI 240
                 89*************987 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.052        12     114     179 ..      91     155 ..      82     165 .. 0.75
   2 !    8.7   0.0    0.0013      0.31      17      41 ..     225     249 ..     219     295 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.052
   TIGR02237 114 ksddr..islklelarqlslLlslArkkdlavvitnqvyedvdndtlrplggtlleylskvilrlekl 179
                 k+ d+  +++ +ela     L+ l ++  la  ++n++ ++ + +++ + ++   + + k +++l k 
  MMETSP1061-20121228|5923_1  91 KKADKdaTQFLVELAIE---LSMLIATGALASFVVNKIVKNLQAGNMDADSEAAASAAEKRLYKLMKE 155
                 44443224555555554...555667889**************9999999999999999999988776 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0013
   TIGR02237  17 iyGpggsGKtnialilaveaaekgk 41 
                 +yGp+g+GKt +a  +a ea++++ 
  MMETSP1061-20121228|5923_1 225 LYGPPGTGKTMLAKAIAKEAEATFL 249
                 8****************99998876 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00028     0.067     488     526 ..     221     259 ..     211     261 .. 0.86
   2 ?    1.6   0.0     0.054        13     257     298 ..     259     300 ..     257     313 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00028
   TIGR02639 488 gsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                 g  l +Gp G Gkt lak++a+e   ++l   +s  m k
  MMETSP1061-20121228|5923_1 221 GGILLYGPPGTGKTMLAKAIAKEAEATFLAVKLSKIMSK 259
                 567889******************999999999988876 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.054
   TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivgagatsgg 298
                 k+ G+ ++ + ++ +  +k    i+fiDe+ t ++   +++ 
  MMETSP1061-20121228|5923_1 259 KWFGESNKFIDAIFSLANKLAPSIIFIDELDTFLNPRDGAEN 300
                 7778888999999999999999**********9976544443 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00014     0.034      18      47 ..     217     246 ..     212     255 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00014
   TIGR02640  18 lksgypvhlrGPaGtGktslalhvakkrdr 47 
                 l++   + l GP GtGkt la ++ak+ + 
  MMETSP1061-20121228|5923_1 217 LQAPGGILLYGPPGTGKTMLAKAIAKEAEA 246
                 556667889****************99765 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00014     0.035     175     199 ..     220     244 ..     216     253 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00014
   TIGR02903 175 pqhiilyGppGvGkttaarlaleea 199
                 p  i+lyGppG Gkt  a+ + +ea
  MMETSP1061-20121228|5923_1 220 PGGILLYGPPGTGKTMLAKAIAKEA 244
                 6779*************99877776 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00066      0.16      39      59 ..     223     243 ..     218     247 .. 0.90
   2 ?   -0.4   0.0      0.47   1.1e+02     154     210 ..     336     393 ..     329     489 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00066
   TIGR02397  39 yLfsGprGvGKTsiArilAka 59 
                  L++Gp G+GKT +A+ +Ak 
  MMETSP1061-20121228|5923_1 223 ILLYGPPGTGKTMLAKAIAKE 243
                 699****************95 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.47
   TIGR02397 154 TtelekipetilSRcqr.fdfkkikeekiverlkkilkkekikveeeaLeliarkaeG 210
                 T  ++ + + il R  r f+++  + +   + ++ il+k +  ve++aL+ + + a+ 
  MMETSP1061-20121228|5923_1 336 TNRPRHVDDAILRRLPRmFEINLPNAQGRHQIMSLILQKSGHPVEPSALKHLPQLAKE 393
                 5556666677777765524444444455567778889999999999999887666654 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0         2   4.9e+02      54      89 ..      90     125 ..      77     182 .. 0.74
   2 ?   10.7   0.0   0.00035     0.084       3      27 ..     223     247 ..     222     259 .. 0.84
   3 ?   -2.9   0.0       5.4   1.3e+03     102     144 ..     459     503 ..     456     506 .. 0.54

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 2
   TIGR02173  54 ekeiDkkiDrkikeiaekeknvvlesrlagWllkey 89 
                 +k+ Dk+  + ++e a + + ++  + la+++++++
  MMETSP1061-20121228|5923_1  90 NKKADKDATQFLVELAIELSMLIATGALASFVVNKI 125
                 677788888888888888888888888888888743 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00035
   TIGR02173   3 ivisGpPGsGkttvakilaeklslk 27 
                 i + GpPG+Gkt +ak +a++ +  
  MMETSP1061-20121228|5923_1 223 ILLYGPPGTGKTMLAKAIAKEAEAT 247
                 5678***************987655 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 5.4
   TIGR02173 102 vraeriakrenksltealkei..iereesekrrykeiygiDlddl 144
                 ++ +r++  + k  ++ +k++  +  e+ +++  ++  +iDl++l
  MMETSP1061-20121228|5923_1 459 IKLRRMTVADMKRAQTKVKRTgeQSAEYANRQGGAQGPQIDLEQL 503
                 444555555555555555555113446666666666667777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       294  (0.0716724); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.47u 0.13s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1919.19
//
Query:       MMETSP1061-20121228|5929_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0066   14.1   0.0      0.013   13.1   0.0    1.4  1  TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR


Domain annotation for each model (and alignments):
>> TIGR01950  SoxR: redox-sensitive transcriptional activator SoxR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.2e-06     0.013      26      88 ..      68     129 ..      58     136 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.2e-06
   TIGR01950  26 litsvrnaGnqrrykrdvlrrvavikvaqrvGlplaeiaealaelpegrtptaddwarlssqw 88 
                 l+  + n+G  r y+++++r v  i  a   G++   i    +el + rt t ++w  ls++ 
  MMETSP1061-20121228|5929_1  68 LLLGTSNKG-ARIYSKNTIRWVLTIACALFSGFTTVVIVSVTEELVSWRTRTLANWLTLSNNN 129
                 555566666.599**********************************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1237.97
//
Query:       MMETSP1061-20121228|5928_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-21   74.2   0.0    2.6e-14   51.0   0.0    2.3  2  TIGR00577 fpg: formamidopyrimidine-DNA glycosylase


Domain annotation for each model (and alignments):
>> TIGR00577  fpg: formamidopyrimidine-DNA glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   9.9e-09   4.1e-05       1     126 [.       1     155 [.       1     167 [. 0.74
   2 !   51.0   0.0   6.5e-18   2.6e-14     145     220 ..     208     282 ..     189     338 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 9.9e-09
   TIGR00577   1 mPelpEVetvrrgleelvlgkt.ikevevvlrkvvkrp.aesedlqk.ellgktilsikRrgKyLlleldkgvv..................alvihlrmegkl.......rleekkeae..kekhvkvelllddGkeLryaDkRkFgtllllekt 126
                 mPelpEV+  rr l +lv ++  ++  +  l+k+  r+  + e++++ + +g  + ++ R+gK + + l+++                    +l  h +m+g++       +l+e +++   +  ++ ++l +++ +e  + D+RkFg++ l ++ 
  MMETSP1061-20121228|5928_1   1 MPELPEVQNFRRLLLPLVSEEHpLRLERQSLEKAPPRKfINDEEIESiHSSGLLVSEVLRKGKLICMVLQNAPKregrgrmnkpdsakattkYLFLHMGMTGRIsnprcipKLQELSDTDiyPPPYTYLKL-VAGPNEACFSDPRKFGAIFLKDSL 155
                 9*****************98752332222333322222144455532156788999***************98899**************************98444333334555454455778887665.4666799**********9998765 PP

  == domain 2    score: 51.0 bits;  conditional E-value: 6.5e-18
   TIGR00577 145 eftaealfeklkkkkrkiktlLLDqk.lvsGiGNiyadEvLfaakihPerlassLskeeiellhkaikevLekAiea 220
                 + t +++  kl +++  ik +LLDqk  v G+GN+ adEvL++ k+hP++  + L+ e++++l++ ++++L +A+  
  MMETSP1061-20121228|5928_1 208 SSTIAQILGKLTHQSMGIKGILLDQKrAVCGVGNWVADEVLYQTKLHPDQ--NYLTSEQARILIDRLHAILDEAVRC 282
                 4567788999**************963799******************98..78********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 2322.18
//
Query:       MMETSP1061-20121228|5926_1  [L=871]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.13s 00:00:00.64 Elapsed: 00:00:00.48
# Mc/sec: 2395.05
//
Query:       MMETSP1061-20121228|5930_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       410  (0.0999512); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 2757.63
//
Query:       MMETSP1061-20121228|5932_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|5933_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.2   0.4     0.0021   14.8   0.3    1.1  1  TIGR03965 actino_glycTran: mycofactocin system glycosyltransferase


Domain annotation for each model (and alignments):
>> TIGR03965  actino_glycTran: mycofactocin system glycosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.3   5.2e-07    0.0021     384     436 ..     140     187 ..     130     216 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.2e-07
   TIGR03965 384 asavsRyywPvlllavllsRrlrllvvallvvdglvdwlrkreeldpvrfvll 436
                  ++++R ++Pv++l v++     ++vv++ vv+g+vd ++ r +  +v f++l
  MMETSP1061-20121228|5933_1 140 KRTIRRPWIPVAVLKVIV-----VVVVVVVVVEGVVDLAATRTTPALVVFAIL 187
                 47899***********99.....899999**************9899999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1273.98
//
Query:       MMETSP1061-20121228|5934_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|5936_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          3    5.4  10.6        3.4    5.2   7.4    1.0  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   7.4   0.00084       3.4     134     240 ..      24     131 ..       2     149 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00084
   TIGR03354 134 seedlddslteagegaaprpapqaa......sldPlkaldqepasaadlddgalsaelaeevaealpadlasidae..stlepelaplpaaqpapapqeqeqaseavaltaflrg 240
                 s++++     ++ e+++p      +      s++P + + ++p++a       + a ++++   ++++ +  ++ +   t  + ++p+p + +++ p+e+ ++++a++l+ fl+g
  MMETSP1061-20121228|5936_1  24 SSPQTHSVPITPLEEPTP------IasahptSPNPTQLNSTQPSTAISTATTTTTATATTTAT-RTRTTAMTTATTttTTTTTMPMPMPMPMDEEPPDERTRETAATLLDVFLSG 131
                 333333222233333333......133333377788877777777755555444444444444.333333333333135555555555666556666666666666688888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1025.92
//
Query:       MMETSP1061-20121228|5931_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.0   1.2     0.0017   15.3   0.8    1.3  1  TIGR00276 TIGR00276: putative iron-sulfur cluster-binding protein


Domain annotation for each model (and alignments):
>> TIGR00276  TIGR00276: putative iron-sulfur cluster-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.8   4.2e-07    0.0017     210     268 ..     378     434 ..     351     451 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4.2e-07
   TIGR00276 210 rvagCdiCqevCPwnklgqetkeedfeplkeklep.elkeLlaiseeefkkkfeasalrr 268
                  ++ C iCq vCP +k+g  t+ + +e   +++++ el e   + +ee+ +  +  a r 
  MMETSP1061-20121228|5931_1 378 ELMFCPICQVVCPVEKKGAATTAD-MEAAAQLAADaELAE--KLQKEEYANAEGRRANRT 434
                 6789**************999876.877777655413333..445555554444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       335  (0.0816675); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.20s 00:00:00.50 Elapsed: 00:00:00.28
# Mc/sec: 2607.92
//
Query:       MMETSP1061-20121228|5939_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 508.16
//
Query:       MMETSP1061-20121228|5942_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 551.95
//
Query:       MMETSP1061-20121228|5941_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 779.36
//
Query:       MMETSP1061-20121228|5947_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.18s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 501.56
//
Query:       MMETSP1061-20121228|5948_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   16.9   0.1     0.0018   16.4   0.1    1.2  1  TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family


Domain annotation for each model (and alignments):
>> TIGR03342  dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   4.5e-07    0.0018      10      54 ..      43      88 ..      35      93 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 4.5e-07
   TIGR03342 10 ldeegyLldle.dWseevaealakeeeielteehwevikflrdfye 54
                 +e+ yL++ e +W+e++    a+ee+ +++++h ev++ ++++ +
  MMETSP1061-20121228|5948_1 43 FEEDRYLKQQEdKWCEKLRALRAQEESARVKSQHDEVVEPVKKHLA 88
                67899**876527**************************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 710.23
//
Query:       MMETSP1061-20121228|5944_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.9e-174  577.2  15.5     8e-174  576.8  10.8    1.0  1  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  576.8  10.8  1.9e-177    8e-174       5     447 ..      16     457 ..      13     469 .. 0.98

  Alignments for each domain:
  == domain 1    score: 576.8 bits;  conditional E-value: 1.9e-177
   TIGR00811   5 idgikqaysmalvifsvvivtalmftdntklakdahpvaalvimwlgilwmsmveggqcsmvglppidrdlykeshpitykicslghkgnnldrylmgrqflvifinftinlcgapleg.aevlglpeiltdiflgsgiamvltvvtigqltaqvnashcmldyinthfmtftlyvtliievtgvmhscylirdmfyfaagkpvetnepprsavqnlfhwgrvvfslgvlcfalavtlealfkgkttmwefipngvavvlfvllmslvgllegmqiaffavakipkaergdhpfarktcellfkgngrnlpgfmvgrqltvtlcffiiarvttldievgvddnifgvsdgiqeffnlgflgaiittilasiawqlvasafpiaflsnpvvyivlrivllieatgicagawflgmihkkvagfqldevyvgtaeeraagekpdhs 447
                 +  +k++ys +l+if  +iv +++f +ntkl+  +   aa+ i+w+ + w+smveggq+s+vglpp+d +lyk+sh +t+ki  +  +g+ ldrylmgrqf+v+ + f  nlc   ++    +lg+p i+  +fl +g+a+ ++   ig+++aqvnas cmldy+nt+f  ft+  + +iev+g++h+cy ++ +f +aag+p+e++e prs vqn+f w rv +s  +l+fa+avtl ++++g+ttmw  +p  v+++lf l+ms+vg+legmqiaffava++   er    +a++tc++lf+g+grnlpgfm+grq+ vtlcffiiarvtt++++ g d+n fgvsd  q ff  g+lga+itti+asiawqlvasafp+afls p+ y++lr  l +e tg+c g+w++  ih+k+  f+ devy+gtaeeraa  k + s
  MMETSP1061-20121228|5944_1  16 FMWFKEIYSTCLLIFCSIIVLTVIFENNTKLSEKS-SWAAFFIFWIALYWLSMVEGGQASLVGLPPVDMELYKDSHKTTHKIMQVINRGDTLDRYLMGRQFMVLALVFVENLCAHAIDPtMSILGMPIIVNKMFLDTGLAVFFMTAMIGKISAQVNASRCMLDYVNTYFAYFTMQTARLIEVSGLLHCCYPVQIFFAWAAGQPLESKETPRSPVQNIFFWLRVLVSTAILAFAFAVTLASIVNGQTTMWPGVPSVVTIILFFLFMSVVGMLEGMQIAFFAVARMTEEERAKSTWAKRTCDVLFEGDGRNLPGFMIGRQMCVTLCFFIIARVTTVQLNEG-DENTFGVSDATQAFFATGLLGALITTIVASIAWQLVASAFPMAFLSTPITYVLLRFCLGLEWTGLCQGSWVVARIHRKIVKFKRDEVYIGTAEERAAKAKANPS 457
                 6689***************************9775.6799**************************************************************************999962589**********************************************************************************************************************************************************************************************************************98.99***********************************************************************************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       318  (0.0775232); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 1943.17
//
Query:       MMETSP1061-20121228|5954_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|5952_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2408.80
//
Query:       MMETSP1061-20121228|5957_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.9    3.6  11.0        4.6    3.3   7.6    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   7.6    0.0011       4.6     335     371 ..     104     141 ..      72     145 .] 0.35

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0011
   TIGR02442 335 pdeekedeseekekeeskkqe.eeepgkddekeedeke 371
                  d e+ d+++e++k+++++++ ++++++dd +++++++
  MMETSP1061-20121228|5957_1 104 YDDENDDDKNENDKNKNENDDdKNKNKNDDRQQQQQQQ 141
                 11111111111111111111111122222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1007.29
//
Query:       MMETSP1061-20121228|5960_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.4    3.2  14.7        7.7    3.2  10.2    1.0  1  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  10.2    0.0019       7.7       8      59 ..       3      56 ..       1      63 [] 0.29

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0019
   TIGR01622  8 eRsRdssreadrdrerdksrersRdrsrdRersrskerdr..dfdrrdrdrdky 59
                e++R+ + e++r+ e++k++er ++ +r+R+ +++ke++r    + +++++++ 
  MMETSP1061-20121228|5960_1  3 EKERQEQLEQKRKMEQQKEKERLKQLERERKLEQQKEKERlkLLNLQQQEKERL 56
                233333333333333333333333333333333333333310222222333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       766  (0.186738); expected 82.0 (0.02)
Passed bias filter:                      407  (0.0992199); expected 82.0 (0.02)
Passed Vit filter:                        63  (0.0153584); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1061-20121228|5959_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.1   0.3      0.045   11.3   0.2    1.2  1  TIGR00153 TIGR00153: TIGR00153 family protein


Domain annotation for each model (and alignments):
>> TIGR00153  TIGR00153: TIGR00153 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   1.1e-05     0.045     134     185 ..     369     420 ..     359     425 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
   TIGR00153 134 eevveeieletdlsealdivkeieslEdeiD.liqikiykkLynlessnvlev 185
                  e v ++e e  l + +d v++++slE++iD  + +++   L + ++ n +++
  MMETSP1061-20121228|5959_1 369 LEYVARLE-EERLLLQMDQVQQVKSLEQQIDeRYHQRLESRLRSRQKNNNIDG 420
                 45677777.6677779***************99*********99999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 2921.97
//
Query:       MMETSP1061-20121228|5962_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 548.80
//
Query:       MMETSP1061-20121228|5965_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1247.90
//
Query:       MMETSP1061-20121228|5966_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|5972_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 403.30
//
Query:       MMETSP1061-20121228|5973_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1099.91
//
Query:       MMETSP1061-20121228|5970_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1603.87
//
Query:       MMETSP1061-20121228|5971_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 1041.77
//
Query:       MMETSP1061-20121228|5976_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|5978_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 454.04
//
Query:       MMETSP1061-20121228|5974_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 779.36
//
Query:       MMETSP1061-20121228|5968_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-48  163.7   7.2    1.7e-48  163.5   5.0    1.0  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    6.3e-05   20.3  11.6    6.3e-05   20.3   8.0    2.8  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter
     0.0086   13.9   2.1       0.03   12.1   0.7    2.2  2  TIGR01191 ccmC: heme exporter protein CcmC


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.5   5.0   1.2e-51   1.7e-48       3     301 ..      13     319 ..      11     322 .. 0.88

  Alignments for each domain:
  == domain 1    score: 163.5 bits;  conditional E-value: 1.2e-51
   TIGR00817   3 tgllfllwyvlnvyFnivnkkllklfhypvlktlvslavgvllellswssilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgref.pltlylsLlpivlGvalaslte...lsfnllgflsamisniefvar.nifsKkiltkk.......sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkakkkke 301
                 + +l + wy+ n  +n++nkk  ++ h+ ++++ ++l vg++   ++w ++l k++++ ++ +   +p++++  + h  s  + +  avSf  ++ka ep+f +v+  ++  + + pl  y  L+piv+Gv la ++e   +  n+++f+ a ++n++   + ++ s  + + k       ++d+ n+ya++ i+++++  p+ +i ++l+ l  e+++a+ + +++ l  +  +    +f +y+  af   + v ++t sv N+ KRv++IvvS ++f+++++  +vlG ++ai G+f+Ys   +kk  +
  MMETSP1061-20121228|5968_1  13 LAFLVVAWYAGNTFYNVFNKKATNMIHAHWFVACAQLVVGIVWSAIMWGTGLRKKPNLTSEDISSCIPIGMCACLAHAGSVLASAVGAVSFAQIVKACEPAFAAVIGLLIPPTDIkPLLAYAMLIPIVGGVGLACVKEgkgVDINVTAFMWASLANVAAALKgKLGSG-VTK-KlksnpekNMDSANVYAVMNIISFLCTVPFVVI-QELPTLDVEWNKAVEEHGLQPLLINIGMSGF-FFYVYNEFAFAFTASVGAVTSSVLNTAKRVIIIVVSTIVFQEPMERNTVLGSAIAIGGTFGYSLASKKKAAP 319
                 6677889******************************************************************************************************9988874788899*************998444568999999999999987665244332.222.22355667************8887777776665.55666677*****999999999977777777.999************************************************************999998665 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.4     0.058        79     198     248 ..      15      64 ..       3      71 .. 0.72
   2 !   20.3   8.0   4.6e-08   6.3e-05      56     262 ..      84     305 ..      73     307 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.058
   TIGR00950 198 llyLgligtllayflynkglkevdasaasilalleplvallLgllilgetl 248
                 +l  +  +    y+++nk ++++   a   +a+++ +v+++ + +++g  l
  MMETSP1061-20121228|5968_1  15 FLVVAWYAGNTFYNVFNKKATNMIH-AHWFVACAQLVVGIVWSAIMWGTGL 64 
                 4555555666668888888887654.4456799999999999999998876 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 4.6e-08
   TIGR00950  56 qlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaG...ivlllsdgnlsislaGlllgllsgisfAl....gtvlakrlvkkeglellqftgfvvlliGallllpfalllgpnlqa....lpatslqwlallyLgligtllayflynkgl....kevdasaasilalleplvallLgllilgetlslvqliggalilaa 262
                 ++ +  +  +la     v++a ++ +  P++++++  l+    ++ +   A+++ ++G    + +   + ++i++++++++ l+++++Al    g+ ++k+l +  + ++  ++ ++v+ i ++l ++ ++++++ +++    + a +  +l  l + +  ++  + +yn  +     +v a++ s+l++++ +  +++++++++e ++  + +g a+ +++
  MMETSP1061-20121228|5968_1  84 CACLAHAGSVLASAVGAVSFAQIVKACEPAFAAVIGLLIPPTDIKPLLAYAMLIPIVGgvgLACVKEGKGVDINVTAFMWASLANVAAALkgklGSGVTKKLKSNPEKNMDSANVYAVMNIISFLCTVPFVVIQELPTLdvewNKAVEEHGLQPLLINIGMSGFFFYVYNEFAfaftASVGAVTSSVLNTAKRVIIIVVSTIVFQEPMERNTVLGSAIAIGG 305
                 55666666788889999***********************999999999999876665100444444459*******************8222244445555555566788999999**999999998888888777542222445555565555555555655566666544222257999************************9999999998887765 PP

>> TIGR01191  ccmC: heme exporter protein CcmC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.7   2.2e-05      0.03      51     121 ..      36     107 ..      10     115 .. 0.75
   2 ?   -0.3   0.0      0.14   1.9e+02      23      39 ..     195     211 ..     187     223 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.2e-05
   TIGR01191  51 aaaeigalftllaLvtGslwGkPmWGtwWvWDarLtsvlilfllylgvla.lvkavenrdkaakaasililv 121
                  +++   +++   Lv G +w   mWGt     + Lts+ i   + +g+ a l +a +   +a+ a+s+  +v
  MMETSP1061-20121228|5968_1  36 NMIHAHWFVACAQLVVGIVWSAIMWGTGLRKKPNLTSEDISSCIPIGMCAcLAHAGSVLASAVGAVSFAQIV 107
                 3333333445567*******************************9999752677777777777777776666 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.14
   TIGR01191  23 ailvyvllaiaslllLv 39 
                 + +vy+++ i s+l+ v
  MMETSP1061-20121228|5968_1 195 SANVYAVMNIISFLCTV 211
                 77899999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1644.79
//
Query:       MMETSP1061-20121228|5980_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2545.50
//
Query:       MMETSP1061-20121228|5979_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 1167.28
//
Query:       MMETSP1061-20121228|5985_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|5987_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-23   79.0   0.0    3.6e-10   37.2   0.0    4.6  4  TIGR02143 trmA_only: tRNA (uracil-5-)-methyltransferase
    2.7e-14   50.6   0.0    1.1e-07   28.9   0.0    3.5  3  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    9.5e-06   22.6   0.0    0.00028   17.8   0.0    2.7  2  TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
     0.0001   19.3   0.0    0.00016   18.7   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    0.00014   19.3   0.0    0.00022   18.6   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    0.00018   18.9   0.0    0.00029   18.2   0.0    1.2  1  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
    0.00045   18.3   0.0     0.0009   17.4   0.0    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0024   15.2   0.0     0.0041   14.4   0.0    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0024   15.0   0.0     0.0036   14.4   0.0    1.1  1  TIGR00755 ksgA: dimethyladenosine transferase
      0.008   13.8   0.0      0.013   13.2   0.0    1.2  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02143  trmA_only: tRNA (uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0       0.1        41      32      87 ..     103     163 ..      90     169 .. 0.72
   2 ?    0.3   0.0      0.14        59     100     148 ..     208     260 ..     197     264 .. 0.77
   3 !   37.2   0.0   8.7e-13   3.6e-10     165     250 ..     347     441 ..     342     467 .. 0.81
   4 !   31.4   0.1     5e-11     2e-08     279     352 .]     501     592 ..     488     592 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.1
   TIGR02143  32 dkhyrlraefrlwhe...gdely.yamfdqetkkki.rvdefeiaselinelmpallaalk 87 
                 +  yr r +f++       + +y yam ++ +   +   ++f+ia ++i + m  ++++l+
  MMETSP1061-20121228|5987_1 103 TWTYRCRCNFQIVVTeasPGPVYrYAMRSKGQPVLLgTKNTFPIATRRIQAAMGGFMEYLN 163
                 45799999999876523323344388888887754415589***********999988875 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.14
   TIGR02143 100 eflstlsgellvsllyhkkldde...wkeaaealkdeldv.nligrakkkkiv 148
                  +  t   + +++l y + l+     w+e+a +l ++l + ++ gr+k++ + 
  MMETSP1061-20121228|5987_1 208 AWRDTPDADCILTLHYDHPLESVrgpWTEQAGKLCHRLGLrQMNGRSKGTLLS 260
                 55667778999*****9999864444**********99984577999998665 PP

  == domain 3    score: 37.2 bits;  conditional E-value: 8.7e-13
   TIGR02143 165 lvyrqvensftqPnaavnekmleWalevl.......eeskgdllelycGnGnfslalaek..fekvlateiakssveaaqanieankidnvqiir 250
                 ++y++ e +f  Pn +  +k l W l+ l       + +k  lle+ycG G  ++al +   ++ +la e+    v a   n+  n ++ v  ir
  MMETSP1061-20121228|5987_1 347 VHYEKPETAFYHPNPNAMTKALAWMLNRLasislhkQGKKLKLLEMYCGCGAHTVALGRSglVQSILAVELDPRLVRACERNLSRNGLEQVVEIR 441
                 68**********************987542222222344559***************875449*************************9987665 PP

  == domain 4    score: 31.4 bits;  conditional E-value: 5e-11
   TIGR02143 279 fetifvdPPraGldketvklv..................kkyerilyiscnPetlkenleelsethrverlalfdqfpythhlesGvllekk 352
                 ++ ++vdPPr Gld+e++ ++                  + + ++ly+sc  ++l  +le+ls  ++v  +a +d fp t+ +e+ v l+k+
  MMETSP1061-20121228|5987_1 501 YDVLLVDPPRQGLDNEVCRMAmmslggeqdatgggdrgtRCFRNLLYVSCGHRALLRDLERLSPVYEVVDCAQMDLFPRTDSIETLVHLRKR 592
                 56789*************985333333333333333332569*********************************************99885 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.23        95     105     125 ..      98     118 ..      79     123 .. 0.73
   2 !   15.8   0.0   2.5e-06     0.001     270     353 ..     356     448 ..     346     458 .. 0.70
   3 !   28.9   0.0   2.7e-10   1.1e-07     359     432 .]     496     584 ..     483     584 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.23
   TIGR00479 105 timedawnYRnkarlslsrsk 125
                 ++ e++w+YR + ++++  ++
  MMETSP1061-20121228|5987_1  98 HSEEETWTYRCRCNFQIVVTE 118
                 236899*********998765 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2.5e-06
   TIGR00479 270 Ffqvnseqtek....lvdralea.lelqgee.kvvDaycGvGtftlplAkq..aksvvgvevvkesvekakrnAelngianv.eflageleev 353
                 F+  n+++  k    +++r+    l+ qg+  k++++ycG G  t+ l +   ++s+++ve  + +v   +rn  +ng++ v e   g++ ++
  MMETSP1061-20121228|5987_1 356 FYHPNPNAMTKalawMLNRLASIsLHKQGKKlKLLEMYCGCGAHTVALGRSglVQSILAVELDPRLVRACERNLSRNGLEQVvEIRRGDAGKW 448
                 66666655443111134443332134455443799**********999986559************************976426666666665 PP

  == domain 3    score: 28.9 bits;  conditional E-value: 2.7e-10
   TIGR00479 359 kekisadkvllDPpRkGcaaevlreii.....klkp...........krivYvsCnPatLarDlevLlkeGYkiekvqvvDmFPhtaHvE 432
                  e+   d++l+DPpR+G ++ev r  +     ++ +           + ++YvsC    L rDle L+   Y++   +++D+FP+t  +E
  MMETSP1061-20121228|5987_1 496 DEGRGYDVLLVDPPRQGLDNEVCRMAMmslggEQDAtgggdrgtrcfRNLLYVSCGHRALLRDLERLSPV-YEVVDCAQMDLFPRTDSIE 584
                 588999***********9999987543222222222222222222223589*****************99.***************9887 PP

>> TIGR02085  meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.14        57     233     294 ..     385     449 ..     345     456 .. 0.69
   2 !   17.8   0.0   6.8e-07   0.00028     302     373 ..     502     590 ..     490     591 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.14
   TIGR02085 233 evkelwdlfcGvGGf..glhcaapdikltGieieseaiaaakrsakelGlenl.sfaaldsakfa 294
                 +  +l +++cG G    +l  ++    +  +e+++  + a +r     Gle++ +++  d+ k a
  MMETSP1061-20121228|5987_1 385 KKLKLLEMYCGCGAHtvALGRSGLVQSILAVELDPRLVRACERNLSRNGLEQVvEIRRGDAGKWA 449
                 44578899999998611455567778899999999999999999999999985256666666655 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 6.8e-07
   TIGR02085 302 elvlvnpprrGiGkelsdyl......eqlap..........kfilysscnaqtmakdiaela.sykilrvqlfdmfphtshyevltllv 373
                 +++lv+ppr+G+ +e++ +       eq a           + +ly sc  +++ +d+++l+  y+++    +d+fp+t+  e l+ l 
  MMETSP1061-20121228|5987_1 502 DVLLVDPPRQGLDNEVCRMAmmslggEQDATgggdrgtrcfRNLLYVSCGHRALLRDLERLSpVYEVVDCAQMDLFPRTDSIETLVHLR 590
                 77888999999999888653111122111112222222222679****************9747*********************9886 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.9e-07   0.00016     105     173 ..     376     444 ..     364     450 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.9e-07
   TIGR00536 105 aleslisqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsn 173
                 a  sl +q +++++l++ +G G+  +al       ++ av + ++ +   e+N ++++le+ ve+ +++
  MMETSP1061-20121228|5987_1 376 ASISLHKQGKKLKLLEMYCGCGAHTVALGRSGLVQSILAVELDPRLVRACERNLSRNGLEQVVEIRRGD 444
                 45678899999******************999999****************************998876 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.3e-07   0.00022      84     149 ..     375     447 ..     363     460 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 5.3e-07
   TIGR03534  84 l......kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdlle 149
                 l      k+ +klk+l++ +G+Ga ++al       +++av+++++ ++ +++N++r+gl++ ve+ ++d  +
  MMETSP1061-20121228|5987_1 375 LasislhKQGKKLKLLEMYCGCGAHTVALGRSGLVQSILAVELDPRLVRACERNLSRNGLEQvVEIRRGDAGK 447
                 444455577778**************************************************9****999754 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0     7e-07   0.00029      79     134 ..     378     433 ..     364     444 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 7e-07
   TIGR03704  79 alakersarlvvvdlccGsGavgaalaaaldavelhaadidpaavrcarrnladaG 134
                    +++ ++l + ++ cG+Ga ++al  +     + a+++dp  vr   rnl+ +G
  MMETSP1061-20121228|5987_1 378 ISLHKQGKKLKLLEMYCGCGAHTVALGRSGLVQSILAVELDPRLVRACERNLSRNG 433
                 44445556678999**************************************9998 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.2e-06    0.0009      19      83 ..     385     451 ..     365     460 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.2e-06
   TIGR02469  19 kgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsn.ieivegdap.kaee 83 
                 k+ +ll+  +G+G  t+ + r     +++a+e ++  ++  e+Nl r+g+++ +ei +gda  +a e
  MMETSP1061-20121228|5987_1 385 KKLKLLEMYCGCGAHTVALGRSGLVQSILAVELDPRLVRACERNLSRNGLEQvVEIRRGDAGkWARE 451
                 3347889989999888888877777789********************6665168999998754444 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     1e-05    0.0041     159     214 ..     385     441 ..     371     453 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1e-05
   TIGR00406 159 kdkkviDvGcGSGiLsiaalklg.aakvvavDiDplavesarkNlelNqvsdllqvk 214
                 k+ k++++ cG G  ++a+ + g ++++ av++Dp  v++  +Nl++N++++ +++ 
  MMETSP1061-20121228|5987_1 385 KKLKLLEMYCGCGAHTVALGRSGlVQSILAVELDPRLVRACERNLSRNGLEQVVEIR 441
                 345789999**********99996799**********************99988765 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   8.8e-06    0.0036      28      91 ..     384     452 ..     371     462 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.8e-06
   TIGR00755  28 eesdvvlEiGpGlGaLTeelleka..kkvvaiEiDkrlaekLrkkle...leekleviegDalkldlee 91 
                  ++ ++lE  +G Ga T +l +    + + a+E+D+rl+ + +++l+   le+ +e+  gDa k + ee
  MMETSP1061-20121228|5987_1 384 GKKLKLLEMYCGCGAHTVALGRSGlvQSILAVELDPRLVRACERNLSrngLEQVVEIRRGDAGKWAREE 452
                 457899**************99752267************9999999888999********99887764 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.1e-05     0.013      78     137 ..     386     445 ..     364     452 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.1e-05
   TIGR00080  78 gakvLeiGtGsGYqaavl..aelvgrdglvvsierieeLvekaerrlkkLeldnv.ivkegDG 137
                 + k Le+ +G+G +++ l  + lv+    ++++e  + Lv   er+l + +l+ v  ++ gD 
  MMETSP1061-20121228|5987_1 386 KLKLLEMYCGCGAHTVALgrSGLVQS---ILAVELDPRLVRACERNLSRNGLEQVvEIRRGDA 445
                 5689************9833457888...8899999***********9999887526888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.56
# Mc/sec: 1400.03
//
Query:       MMETSP1061-20121228|5988_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 755.27
//
Query:       MMETSP1061-20121228|5991_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-23   80.7   4.6    2.9e-12   44.3   0.1    2.8  3  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.1   1.6e-13   6.7e-10      94     123 ..      32      61 ..      14      70 .. 0.86
   2 !   44.3   0.1   7.1e-16   2.9e-12     127     180 ..      87     140 ..      79     147 .. 0.92
   3 ?    0.2   0.1     0.023        94     180     197 ..     170     186 ..     160     187 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.6e-13
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiiv 123
                  l++++G+lvgklH+ givhgDlttsN+iv
  MMETSP1061-20121228|5991_1  32 VLARQMGRLVGKLHNIGIVHGDLTTSNMIV 61 
                 5789*************************9 PP

  == domain 2    score: 44.3 bits;  conditional E-value: 7.1e-16
   TIGR03724 127 klyliDfGLgkkskevedkavDlhvlkrslestheelaeelieaflegYkeeve 180
                 +l liD+GL+k +++ve++avDl+vl+r+l sth++l++++++++le+Y+ ++e
  MMETSP1061-20121228|5991_1  87 ELALIDLGLSKSTASVEEQAVDLYVLERALLSTHPDLSDTFFDQVLEEYRINTE 140
                 678**********************************************97765 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.023
   TIGR03724 180 eeekavlekvkeiesrgR 197
                 +++ + l++++++++rgR
  MMETSP1061-20121228|5991_1 170 HNH-TTLQRLEQVRMRGR 186
                 333.3899*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1206.76
//
Query:       MMETSP1061-20121228|5989_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.44    6.6   2.6       0.54    6.3   1.8    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
       0.49    6.6  17.3       0.86    5.7  12.0    1.3  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   1.8   0.00026      0.54     319     400 ..     248     345 ..     145     372 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00026
   TIGR00934 319 qnltrlaktksfddskavrlersktidraeasdleeldrakdfq................kmveknvkaakrkkknfkkreanlklfeksryakksdr 400
                 +++  l ++++ +d     ler++ + +ae+s+ e+ d+++  +                +  +++ ++ +++ +++k  + n +  e s+ +++s++
  MMETSP1061-20121228|5989_1 248 KAVALLLQENVIEDLDLSYLERKRKRPKAEESEPEDKDESETNDeddkkqqeesdepdstEPSNDESEQDSESAPESKPDDSNANADETSPTQESSSE 345
                 34444445555555444444444444444444433333333111000000000000000011111122222222222223333333333322222222 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  12.0   0.00042      0.86     295     382 ..     255     346 ..     247     357 .. 0.41

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00042
   TIGR02442 295 eedvreaaeLvlkhRrrrkpfeeeqekeekkleekkeeakpdeekedes....eekekeeskkqe...eeepgkddekeedekeeaeeeaesaee 382
                 +e+v e   L    R+r++p  ee e e+k+++e++ e+++++++e ++    e +++e+++++e   e++p  dd++ +  + + ++e++ +e+
  MMETSP1061-20121228|5989_1 255 QENVIEDLDLSYLERKRKRPKAEESEPEDKDESETNDEDDKKQQEESDEpdstEPSNDESEQDSEsapESKP--DDSNANADETSPTQESS-SES 346
                 577777888888899999998887222222222222222222222222222212222222111112112222..22222222222222222.223 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 2270.21
//
Query:       MMETSP1061-20121228|5992_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1324.44
//
Query:       MMETSP1061-20121228|5997_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 245.12
//
Query:       MMETSP1061-20121228|5995_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2705.78
//
Query:       MMETSP1061-20121228|5994_1  [L=748]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-116  387.3   0.0   3.8e-116  386.9   0.0    1.1  1  TIGR00955 3a01204: pigment precursor permease
    8.6e-78  260.0   8.2    4.6e-49  164.8   0.0    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.2e-32  111.2   0.1    1.9e-32  110.5   0.1    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      7e-29   98.8   0.1    1.2e-28   98.0   0.1    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.5e-28   97.0   0.2    3.9e-28   96.4   0.1    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    9.3e-28   95.3   0.3    1.5e-27   94.6   0.2    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.2e-27   94.7   0.4    1.9e-27   94.1   0.3    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.4e-27   94.5   0.1    2.3e-27   93.9   0.1    1.2  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.8e-27   94.0   0.0    2.9e-27   93.3   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.3e-26   91.5   0.0    1.9e-26   91.0   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.4e-25   88.0   0.1    3.9e-25   86.6   0.1    1.4  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.1e-24   84.0   0.0    3.3e-24   83.4   0.0    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.4e-24   83.7   0.2    4.3e-24   82.9   0.1    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    4.7e-24   82.8   0.5    7.7e-24   82.2   0.3    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    4.8e-24   83.1   0.2    6.9e-24   82.6   0.1    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.8e-23   81.1   0.1    2.8e-23   80.4   0.1    1.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    3.6e-23   80.1   0.0    9.2e-23   78.7   0.0    1.6  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    9.9e-23   78.7   0.2    1.5e-22   78.0   0.1    1.3  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.3e-22   77.8   0.2    1.8e-22   77.2   0.1    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    3.9e-22   76.6   0.0    6.3e-22   75.9   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.4e-21   74.3   0.1    4.5e-21   73.4   0.1    1.4  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.8e-20   70.3   0.2    4.6e-20   69.7   0.1    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    4.6e-20   70.0   0.1    6.8e-20   69.5   0.1    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    9.6e-20   68.7   0.2    2.6e-19   67.3   0.0    1.7  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.6e-19   67.6   0.0      4e-19   67.0   0.0    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    7.2e-19   66.1   0.5    1.4e-18   65.1   0.1    1.6  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    9.7e-19   65.6   0.1    1.8e-18   64.7   0.1    1.4  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    4.1e-18   63.5   0.1    2.1e-17   61.2   0.1    1.9  1  TIGR01978 sufC: FeS assembly ATPase SufC
    4.1e-18   63.5   0.0    6.9e-18   62.8   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    5.8e-18   61.0   0.0    9.4e-18   60.3   0.0    1.2  1  TIGR01257 rim_protein: rim ABC transporter
      7e-18   62.7   0.0    1.2e-17   61.9   0.0    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.3e-17   61.6   0.1      2e-17   61.0   0.1    1.1  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      2e-17   61.1   0.1    3.2e-17   60.4   0.1    1.2  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.1e-16   58.4   1.5    2.7e-16   57.1   1.0    1.6  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.9e-16   56.9   0.1      5e-16   56.1   0.1    1.2  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    4.3e-16   56.4   0.1    1.1e-15   55.0   0.1    1.6  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.3e-16   56.4   0.0    1.7e-15   54.4   0.1    1.9  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    4.6e-16   56.1   0.0    7.3e-16   55.4   0.0    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.9e-16   56.4   0.0    9.9e-16   55.6   0.0    1.3  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.2e-14   52.4   0.1    2.2e-14   51.5   0.0    1.4  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.4e-14   52.2   0.0    2.4e-14   51.4   0.0    1.3  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      2e-14   50.6   0.1    3.7e-14   49.7   0.1    1.3  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.6e-14   51.2   0.2    5.1e-14   50.2   0.1    1.4  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      7e-14   49.0   0.5    1.4e-10   38.1   0.2    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.2e-13   48.3   0.1    1.8e-13   47.7   0.1    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    3.4e-13   46.8   0.0      6e-13   46.0   0.0    1.3  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.1e-12   44.9   0.1    2.6e-12   43.6   0.1    1.6  1  TIGR00958 3a01208: antigen peptide transporter 2
    1.3e-12   45.0   0.0    3.3e-11   40.3   0.0    2.0  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.4e-12   44.9   0.1    2.9e-12   43.9   0.1    1.4  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    2.3e-12   44.7   0.2    7.1e-12   43.1   0.1    1.7  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.7e-12   44.5   1.0    5.1e-11   40.3   0.9    2.5  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    9.8e-10   35.1   0.6    1.5e-08   31.1   0.1    2.0  2  TIGR00630 uvra: excinuclease ABC subunit A
    7.2e-08   29.3   0.0    1.3e-07   28.4   0.0    1.3  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    3.5e-05   19.2   0.1    5.3e-05   18.7   0.0    1.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    0.00018   16.8   0.0    0.00028   16.2   0.0    1.2  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
  ------ inclusion threshold ------
      0.026   10.7   0.0      0.088    9.0   0.0    1.7  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      0.036   10.8   0.3      0.073    9.8   0.2    1.4  1  TIGR00634 recN: DNA repair protein RecN


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  386.9   0.0  5.2e-118  3.8e-116      23     611 ..     142     746 ..     119     748 .] 0.82

  Alignments for each domain:
  == domain 1    score: 386.9 bits;  conditional E-value: 5.2e-118
   TIGR00955  23 lvkrleealarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrse..kglkvsgdvllnGekve....akemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavkffselg..lpcPenynpadFvlkvlavepgseeesretiekicdaeaksklsreveentnlasgkekklvkdsen..eekikykasfltqflvllkRsllsvlrdplllkvrllqvivvavligliylgqeltqkgvqningalFllltemtFqtvfavinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestsl..alsvappvvipfllfgGfflnvdsvPvyfkwlsylSwfrYanEallinqwsdvkeie.................lleantteecpssgeeiLeelsfe..aadlaldllilvvlilvfrllaylalri 611
                 ++kr+++   rk+++  +l ++  ++++ +l A +G+SG+GKt L +++a++ +  ++++  g++++  +  e    a+  +++ + v qddl+++ ltv+e+++f a+l+++++    e r  vee ++elgL + +d +i       ++SgGerkR++la+e++  P+lL+cDEPTsGLD+++a s+vk+Lk+l + g++v+l+iHQP  ++f+l+d+++ll++Grvvy G+p++  ++++++   +p P +   ad++++++  +++ +++s  +++ + d+  +     + +   n  s+ ++ + ++ ++  +  +ky+asf+tq+ +ll R   ++ r  +l++v ++ +++  +++g +y++ + +++ + ++n+ lF+ll       v + i vf  e+ +++RE a++lYr+  Y+ ak++++  l i++p+++ +++Yw +gl++++ +fl+++l   l+   ++s+g++ls  +++ +l  a+ vapp+++ + l++Gf++   ++ v++ ++sylS+ rY++ a+lin+++    i                  +l a ++ ecp  ge++ +++ +e   a++++++ i++++ +vf + +y +lr+
  MMETSP1061-20121228|5994_1 142 SLKRNRSP--RKRSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsEDISH-GSIAVKNQGNEgkglARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAH---VEVRSLVEEAMKELGLLHVRDHMIA------SISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPRTDIFNLLDRLLLLSKGRVVYDGHPKRVRSYLEDTAgkIPLPPETGIADWIMDTIIGDEKLQQSSEGHVS-LADHWVAHRERMQGNLRPNHDSSLANIVPSQRNHlpQGVSKYEASFWTQLSMLLSRIS-KQQRGERLTRVSFMLTLTYILFTGFMYFRLPDNTANIFERNSLLFFLLIAQGLGIVTSCIGVFHRERALLRRERAKKLYRVLPYFFAKIVSDSTLSILMPMVYGIVTYWTAGLRPTVAAFLKCMLAFYLTLSCSQSMGFFLSLSCSTNTLaeAMIVAPPITLFMYLLAGFYIPIHNMHVALLYVSYLSFARYGYTAMLINEYEGRG-IPcvaqnetgnandpatgiTLGALDASECPLPGEAVYKSMGVEgiFANYWFNIGIVALFQVVFLVGTYALLRR 746
                 34444444..78889999********************************98762144444.5566644433311223566899******************************5...67899********************......8********************************************************************************************986434999**************999998888744443.33433333222222233332333333333333331133456***************76.5667889************************************************************************************************************************************98766666665227999**********************************************8753.3411222234444454444444444455555555555555555224799******************999986 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.8   0.0   6.3e-51   4.6e-49     744    1118 ..     122     496 ..      86     499 .. 0.80
   2 !  102.4   5.3   4.5e-32   3.2e-30     391     686 ..     446     740 ..     434     748 .] 0.83

  Alignments for each domain:
  == domain 1    score: 164.8 bits;  conditional E-value: 6.3e-51
   TIGR00956  744 evneeveeekesgeeifewrdltyevkikkekr.vlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttG.vitegdrlv.....ngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvYfGdlGensktlieYFe.khGaekcpeeanPAewmLevi.g...aaagakanqDyfevwrnsseykavk..eeldeleeelskkedkkesekkkkyaasllkqfklvlirlfqqyWRtpdyllskllltivaalfiGftffk 1118
                  ++ ++  + + sg +  +w  l  +   +k +r  +Ld +   ++P +ltA mG sG Gkt L  v+a+  +    i +g + v     +g+ l    +  +G v q+Dl l + tv e++ f+A+l+ p++v   e  + vee +k l+l +  d ++           Rkr++++ e+v +P +ll  DePtsGLD+ ta s+vk+l+ l+  G++++  iHqP  ++++  DrLLll kG ++vY G    + k++  Y e + G  ++p+e+  A+w+++ i g       ++ +   +++w    e+ + +   + d+  +++  +++++ ++  +ky as+++q+ + l r ++q+ R        ++lt++  lf Gf++f+
  MMETSP1061-20121228|5994_1  122 DISYNPVTATTSGGASSSWLSLKRNRSPRKRSRtLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFSeDISHGSIAVknqgnEGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHV---EVRSLVEEAMKELGLLHVRDHMIASISG----GERKRVSLAQEIVVRP-SLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPRTDIFNLLDRLLLLSKG-RVVYDG----HPKRVRSYLEdTAGKIPLPPETGIADWIMDTIiGdekLQQSSEGHVSLADHWVAHRERMQGNlrPNHDSSLANIVPSQRNHLPQGVSKYEASFWTQLSMLLSRISKQQ-RGERLTRVSFMLTLTYILFTGFMYFR 496 
                  5555555554455666666666665555555541679*****************************999876531344444443111114555666666689*****************************99...6689*****************9986544....58**************.77779****************************************************9.****99....5899999**978999**************976252223445666677899**998888765411455555667777788888889*****************998876.888899999****************7 PP

  == domain 2    score: 102.4 bits;  conditional E-value: 4.5e-32
   TIGR00956 391 rkkskytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyvrggalffallfnafsslleiasly.earpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilfl...atlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesllvnefharefecsqlvPsgsgyenlsseekvCalvgaepgedyvdgdeylk..lsfdyknkhkWrnlgiilafvvffvvvv 686
                 +  sky  sf+ q+ ++l+R  ++ +g+    ++  + +++  l ++ ++++l+ nt +++ r + lff l+ + +  ++  + ++  +r++++++r+  ly+     +a i+s+  +++++ +v+ i++y+  +lr++ ++F++ +L   l   +++ m ++F s++  t+tl+eAm +a  + l + l++gf ip ++++  + +++y++  +y + ++l+ne+ +r ++c     +g++ + ++       + ga   ++   + e ++  +  +    ++W n+gi+  f v+f+v +
  MMETSP1061-20121228|5994_1 446 QGVSKYEASFWTQLSMLLSRISKQQRGERLTRVS-FMLTLTYILFTGFMYFRLPDNTANIFERNSLLFFLLIAQGLGIVTSCIGVFhRERALLRRERAKKLYRVLPYFFAKIVSDSTLSILMPMVYGIVTYWTAGLRPTVAAFLKCMLAFYLtlsCSQSM-GFFLSLSCSTNTLAEAMIVAPPITLFMYLLAGFYIPIHNMHVALLYVSYLSFARYGYTAMLINEYEGRGIPCVAQNETGNANDPAT-----GITLGALDASECPLPGEAVYksMGVEGIFANYWFNIGIVALFQVVFLVGT 740
                 4579****************98888888766665.55567778999******************************99988776661579******************************************************9988655401044444.689*********************************************************************95555555544444.....4455555555555555444400455666899***********98877644 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.1   2.7e-34   1.9e-32      15     198 ..     155     340 ..     147     357 .. 0.89

  Alignments for each domain:
  == domain 1    score: 110.5 bits;  conditional E-value: 2.7e-34
   TIGR02673  15 veaLkdvslkiekgeflfltGasGaGkttllklllga....ekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdee 198
                 + +L+++  +i++ +++  +G+sG+Gkt+l  ++ ++    e  s+G++ v+++  +     ++p  ++ +gvv+qD  ll + tv e + +a +++   + e+++ vee+++ +gl +  +++  ++sgGe++Rv++a  iv +P+ll+ DePt  lD++++ ++++ lk l + G +v+++ h+ +
  MMETSP1061-20121228|5994_1 155 TLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQanfsEDISHGSIAVKNQGNEGKGLARIP--KQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPR 340
                 568999****************************9872222456789****99988777777777..5899******************************************************************************************************************865 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.0   0.1   1.7e-30   1.2e-28      21     227 ..     155     367 ..     137     375 .. 0.88

  Alignments for each domain:
  == domain 1    score: 98.0 bits;  conditional E-value: 1.7e-30
   TIGR03258  21 rvvlddlsleieaGellallGksGsGkttllravaGfvkadG....Grllvadr.....dlthlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetral 227
                   vld +  ei + +l a +G+sGsGkt+l  +va   + +     G ++v ++      l+ +p  k+ ++++ q+  l+  l+vee + f  r +  ++ ++   v +a+k ++l  +  ++ a +sGG ++rv+la+ +vvrp +l+ dep s lda    s+v+ lk l   l +  vl++   r++ + l d++ll+ +G+++  G+++++
  MMETSP1061-20121228|5994_1 155 TLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFSEdishGSIAVKNQgnegkGLARIP--KQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLV-SLGHSVVLVIHQPRTDIFNLLDRLLLLSKGRVVYDGHPKRV 367
                 469**************************99999864443322347*****75411111455555..8999**************************999************************************************************************97.5888888888888***********************99876 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.1   5.5e-30   3.9e-28      15     219 ..     152     358 ..     148     359 .. 0.89

  Alignments for each domain:
  == domain 1    score: 96.4 bits;  conditional E-value: 5.5e-30
   TIGR02982  15 elrkqvlfdinleiepgeiviltGpsGsGkttlltligglrs....vqeGelkvlgkelkgasekelvqv.rrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr..ildvadrivkmedGkl 219
                 + r+ vl  i  ei+p ++    GpsGsGkt l ++++   +    + +G++ v ++   g + k l ++ ++ +G+++q   ll  lt+e+ + +a+ lk   ++ e ++ +ee ++++gl +  d++ + +sgG ++rv++a+ +v rP+l++ dePt+ ld++++ ++v+ l+ l    g +++lv h +r  i+++ dr++ + +G++
  MMETSP1061-20121228|5994_1 152 RSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQ---GNEGKGLARIpKQMVGVVWQDDLLLGNLTVEETIYFAARLKMP-AHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVS-LGHSVVLVIHQPRtdIFNLLDRLLLLSKGRV 358
                 568899******************************998765111155688887765...555566777724568**************************99.7889999******************************************************************985.79999******99889************987 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.2   2.1e-29   1.5e-27      14     215 ..     153     357 ..     144     358 .. 0.90

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 2.1e-29
   TIGR00960  14 aaelaldnvtvkiekGelvflvGhsGaGkstllklilgi....ekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathd.enlveskrkrvltlskGk 215
                 +++l ld +  +i+  +l+  +G+sG+Gk++l  ++ +     e  s G i v++q  +     ++p  ++ +G+v+qd  ll + tv + + +a r+      e++  v++a++++Gl + + ++   +sgGe++rv++a+ +v +P+ll+ dePt+ ld  +++ +++ l+ +  +G  v++  h+ ++ + +   r+l lskG+
  MMETSP1061-20121228|5994_1 153 SRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQanfsEDISHGSIAVKNQGNEGKGLARIP--KQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQpRTDIFNLLDRLLLLSKGR 357
                 67889****************************9998861122446788888888877776677777..599**************************999999********************************************************************************99984556888899999999998 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.3   2.6e-29   1.9e-27      15     221 ..     156     369 ..     149     377 .. 0.87

  Alignments for each domain:
  == domain 1    score: 94.1 bits;  conditional E-value: 2.6e-29
   TIGR03864  15 ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeak....egeikvaGldlrra..pkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathl..vdeveaedrlvvlhkGkvlaqGaaaelaa 221
                  +ld +  ++++ +++a +Gp G+Gk+ L s+++   + +    +g+i+v  +  + +  ++   + +Gvv+q+  l  +l+ve+ + + a L+  ++ e+++ +eea+++lgl + +++ + +++GG+r+rv +a+ ++ +P+lL+ De+t GLD+++  +lv++++ lv + g sv+   h   +d  +  drl++l kG+v+ +G ++++++
  MMETSP1061-20121228|5994_1 156 LVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFSedisHGSIAVKNQGNEGKglARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLV-SLGHSVVLVIHQprTDIFNLLDRLLLLSKGRVVYDGHPKRVRS 369
                 5899*****************************99776554455788888654444330044444668*******************99999*999999************************************************************************.677777778885337888999****************999876 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.9   0.1   3.2e-29   2.3e-27      11     218 ..     153     367 ..     146     374 .. 0.88

  Alignments for each domain:
  == domain 1    score: 93.9 bits;  conditional E-value: 3.2e-29
   TIGR00968  11 GdfqalddvdlevktGslvallGpsGsGkstllrviaGl....ekpdsGrilleGrdvt...rvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthd.qeealevadrivvlekGkieqvgsaeev 218
                  ++ +ld++  e++  +l+a +GpsGsGk++l  v+a      e+   G i ++ +        ++ ++ +G v+q+  l+  ltv++ i f  +++   + +++  vee ++ ++l ++ d+  + +sGG+r+rv+la+ + v p +l+ dep + lda     l + l+ l   +  + v+v h+ + +  ++ dr+ +l+kG++   g ++ v
  MMETSP1061-20121228|5994_1 153 SRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQanfsEDISHGSIAVKNQGNEgkgLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVS-LGHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDGHPKRV 367
                 56789*******************************9752222566789999976544311134677899*************************************************************************************************99999976.55577888887367899**************998888776 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.3   0.0     4e-29   2.9e-27      10     195 ..     154     340 ..     146     353 .. 0.91

  Alignments for each domain:
  == domain 1    score: 93.3 bits;  conditional E-value: 4e-29
   TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilgll....ekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpe 195
                    +l+ ++ +i+  +l+a +G sGsGK+ l  ++++     e+ ++g++ ++++ +   + k   ++ ++ +g ++q+  Ll n tvee +  a  lk   + e +++++e+++++gl +  ++ i ++sgGe++Rv+la+ ++  ++l++ DEPt+ LD+ +   +++ lk l + g+ +++v H+p 
  MMETSP1061-20121228|5994_1 154 RTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQanfsEDISHGSIAVKNQGN---EGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPR 340
                 4579999*************************9999752223778899999999994...4788999************************************************************************************************************************975 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   2.6e-28   1.9e-26      12     298 ..     150     450 ..     138     484 .. 0.76

  Alignments for each domain:
  == domain 1    score: 91.0 bits;  conditional E-value: 2.6e-28
   TIGR03265  12 kefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGL....ekqdaGaillggr.....ditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthd.qeealslaDrivvmnkgkieqvgtPeei..Yeq.Patkf.vadfvGevnllkaeveedsrvrv.gevelaveeelaeagesvklavrPediklka..aekeenllkarved 298
                 ++  ++ +l+ i  +++   l + +GPsG Gkt+L  ++a      e+ + G+i+++++      ++r+p  k+  G+v+q   L  nltv+e i +  + k   + ev++ vee+++ +gl ++++   + +sGG ++rv+La+ ++++P+lL+ DeP s LDa    +L + lk l   lg   ++v h+ + + + l Dr+  + kg++   g P+ +  Y +  a k  +    G ++++  +   d++++  +e +++++++   + e+++  +rP++    a  + +++n+l   v++
  MMETSP1061-20121228|5994_1 150 RKRSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQanfsEDISHGSIAVKNQgnegkGLARIP--KQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLV-SLGHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDGHPKRVrsYLEdTAGKIpLPPETGIADWIMDTIIGDEKLQQsSEGHVSLADHWVAHRERMQGNLRPNHDSSLAniVPSQRNHLPQGVSK 450
                 55567788999****************************975333377899***9865411110344444..5568**************************99**************************************************************************6.6999*******84578899*******************99833322122111133345555555555554444433134445555555555566667777765443332356666666666655 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.1   5.4e-27   3.9e-25       9     217 ..     158     373 ..     152     379 .. 0.86

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 5.4e-27
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPds....Gtarva..GyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthy.leeadkladrvaiidkGkiiaedtpeeLKervgk 217
                 +d +  +++  ++ + +GP G GKt + ++++   + ++    G+  v+  G +    ++  ++ +gvv q+  +  +Lt +e +++ ++l    + e ++ +ee ++ + l + +d+ +   sgG r+r++la  ++++P++l  DEPt+GLD++t+ ++ + ++ l++ g++++l  h+   ++ +l dr+ +++kG+++  + p+ +++ +++
  MMETSP1061-20121228|5994_1 158 LDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFSEdishGSIAVKnqGNEGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDGHPKRVRSYLED 373
                 6778888888899999**********999998876544312115555532244444445566799**************************9999999*************************************************************************9999888776268999*******************9999887766 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.4   0.0   4.6e-26   3.3e-24       2     188 ..     174     367 ..     173     375 .. 0.88

  Alignments for each domain:
  == domain 1    score: 83.4 bits;  conditional E-value: 4.6e-26
   TIGR01187   2 LGpsGsGkttlLrllaG...l.eeldsGkilldgedvt...evpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqe.ealtmsdriavlrkGkiaqigepeei 188
                 +GpsGsGkt l  ++a    + e++++G+i ++++           k+ v+vv+q+  L   +tvee + f+ +++   + e+++ v+ea++   l ++ ++ +  +sGG r+rv+la+ +v +P +L+ Dep s LD      + + lk l   lG  vvlv h  + + + + dr+ +l+kG+++ +g+p+ +
  MMETSP1061-20121228|5994_1 174 MGPSGSGKTSLTSVVANqanFsEDISHGSIAVKNQGNEgkgLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLV-SLGHSVVLVIHQPRtDIFNLLDRLLLLSKGRVVYDGHPKRV 367
                 7*********99999862224356899***9976543310123334789*****************************************************************************************************996.6**********96526779*******************987 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.1     6e-26   4.3e-24       5     185 ..     155     337 ..     152     364 .. 0.86

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 6e-26
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPk....sGkvlldGeeldysrkgllelrkk.valvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                 + vl+ +  +++  + +a +G+ G+Gk+ l + ++ + +      +G +    ++   + kgl ++ k+ v++v qd d  l   +v+e + f+ +     + ev++ v+ea++ +++ +++++ +  +sgGe+krv++a  +++rp +l+ dePt+gld++ a  l+++l++l+  G++vv+  h
  MMETSP1061-20121228|5994_1 155 TLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFSedisHGSIA--VKNQGNEGKGLARIPKQmVGVVWQD-DLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIH 337
                 56899999999999****************99987765533111134433..345566789**99866615666664.66666789*******9998888899*******************************************************************************9988 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.2   0.3   1.1e-25   7.7e-24       6     224 ..     147     367 ..     142     372 .. 0.84

  Alignments for each domain:
  == domain 1    score: 82.2 bits;  conditional E-value: 1.1e-25
   TIGR03873   6 rvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGlla....pdaGev..dlagadlkalsrrararrvalveqdsdaevplsvrdvvalG.riPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdl.nlaasvcdhvvvldgGrvvaaGppaev 224
                 r   ++ + l++d +  +  + +lt+ +GP GsGk+ l +++a   +     ++G++  + +g++ k+l+ r   + v +v qd     +l+v + + +  r+     + a+  e  ++v++a+ + +l ++ d  +  +sGGer+rv la+ +  +P+ll+ dePt  ld ++ l+l++ ++ l++ g  vv+ +h   +   ++ d++++l++Grvv  G+p++v
  MMETSP1061-20121228|5994_1 147 RSPRKRSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIavKNQGNEGKGLA-RIPKQMVGVVWQDDLLLGNLTVEETIYFAaRLK----MPAHV-EVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPrTDIFNLLDRLLLLSKGRVVYDGHPKRV 367
                 555677788999******************************9875411114567663366777788876.5566789*****************987641333....33333.45679******************************************************************************9715567899*****************988 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.1   9.6e-26   6.9e-24      16     221 ..     161     369 ..     148     426 .. 0.85

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 9.6e-26
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpde....geivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerris..eekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsl.devarladrvvvledGrvkaagkleevla 221
                 + +e+   ++ta  G sGsGktsl  ++a   + +e    g i ++++   +  k++   + k  vg+v+q+  L   l+v e + +  +  ++++ +++   e+ ++ Lg+ h+ + + +++sGGe++Rv+++  ++ +P LL+ DeP + LD +    ++  L+ l  +l   +++v H+  +++  l dr+++l +Grv   g+++ v +
  MMETSP1061-20121228|5994_1 161 IRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFSEdishGSIAVKNQ--GNEGKGLA-RIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRslVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLV-SLGHSVVLVIHQPrTDIFNLLDRLLLLSKGRVVYDGHPKRVRS 369
                 6788888899*******************9876554111155555443..34444444.566889************************99999988877335889999*********************************************************997.5778888888886379*****************9999988865 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.4   0.1   3.9e-25   2.8e-23      14     219 ..     151     358 ..     143     360 .. 0.87

  Alignments for each domain:
  == domain 1    score: 80.4 bits;  conditional E-value: 3.9e-25
   TIGR02211  14 gkleievlkgvsleiekgelvaivGssGsGkstllhllggl....dkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthd..lelakkldrvlelkdgkl 219
                 ++ ++ vl+ +  ei+  +l+a +G sGsGk+ l  +++      ++ ++G++ +k +       +  a++  + +G ++q   ll ++t+ e + + + ++   + e ++  +e ++++gl +  ++  + +sGGer+rv++a+ +v +P+l+++dePt+ ld++ta ++ + l+ l + ++ ++++v h+  +++ + ldr+l l++g++
  MMETSP1061-20121228|5994_1 151 KRSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQanfsEDISHGSIAVKNQG---NEGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVS-LGHSVVLVIHQprTDIFNLLDRLLLLSKGRV 358
                 556788******************************99876111234566777776554...34456788999******************************************************************************************************99975.6778888888722467889999999998876 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.7   0.0   1.3e-24   9.2e-23      16     234 ..     156     368 ..     150     374 .. 0.82

  Alignments for each domain:
  == domain 1    score: 78.7 bits;  conditional E-value: 1.3e-24
   TIGR02315  16 qalknvnleikkGelvaviGlsGaGkstllrsinrlve....issgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsg.rlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdl.akkyadrivglkageivfdgasseld 234
                  +l+ + +ei++ +l+a +G+sG+Gk+ l   + +  +    is+gsi ++++   ++ k   r  ++ +g+++q+  l+ +ltv e +  + rl +   ++          ++   e+++++gl ++ ++   ++sGG+++Rv++a  ++ +p+l+++DEP++ LD +++  ++++lk +    g +v++ +Hq      +  dr++ l +g++v+dg+++++ 
  MMETSP1061-20121228|5994_1 156 LVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQG--NEGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAaRLKMPAHVE---------VRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVS-LGHSVVLVIHQPRTdIFNLLDRLLLLSKGRVVYDGHPKRVR 368
                 68999***********************99988655442223777788777764..44555566778899***************99986541554444444.........2334445677889999999999***********************************************985.78999999**9765256899*****************9986 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.1   2.2e-24   1.5e-22     332     519 ..     152     341 ..     119     353 .. 0.81

  Alignments for each domain:
  == domain 1    score: 78.0 bits;  conditional E-value: 2.2e-24
   TIGR02857 332 egrkpalkevsltvepgelvalvGaSGaGKstllklllgfve....pteGailv.....ngaelaeldadswrkqiawvpQkPllf.egtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrlal 519
                 + r+ +l+ +  +++p +l+a +G+SG+GK++l ++++ +++      +G+i+v     +g+ la +     ++ ++ v Q  ll+ + tv e i +a +    a+v+    r  ++e +k+l  gl    ++  a +SgG+r+R++LA+ ++   +ll+ DEPt+ LDa+t+  ++++l+ l+  g++v+lv H++ +
  MMETSP1061-20121228|5994_1 152 RSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVknqgnEGKGLARIP----KQMVGVVWQDDLLLgNLTVEETIYFAARLKMPAHVE---VRSLVEEAMKEL--GLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVsLGHSVVLVIHQPRT 341
                 455678999*****************************9986222256799***65444344455444....44799999999877367********99988888654...455566777777..5767788999***********************************************9967*********8764 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.1   2.5e-24   1.8e-22     479     692 ..     154     371 ..     149     375 .. 0.80

  Alignments for each domain:
  == domain 1    score: 77.2 bits;  conditional E-value: 2.5e-24
   TIGR03375 479 ekaaLknvslkikpGekvaiiGriGsGKstllklllglye....pteGsvlldgvdirqidpadl.rrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldl.qige.rGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtH..rtslLelvdriivldkGrivadGpkdevleal 692
                 ++ +L+ ++ +i+p +  a +G  GsGK++l+ +++++ +     ++Gs+ + +   +    a + ++ +g+v qd  L+ G    N+++++  +  ++l +    + v ++v++  k l l  +++   +s+SgG r+ v+la  ++  p++l+ DEPts lD+++  +l+++Lk l++ ++ +vlv H  rt + +l dr+++l+kGr+v dG  ++v + l
  MMETSP1061-20121228|5994_1 154 RTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQGNEGKGLARIpKQMVGVVWQDDLLL-G----NLTVEETIYFAARL-KMPAHVEVRSLVEEAMKELGLlHVRDhMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSlGHSVVLVIHqpRTDIFNLLDRLLLLSKGRVVYDGHPKRVRSYL 371
                 5678999999**************************99862222467*****9998888888888356689999997766.3....44554444444433.3334445777777766655541344313589***********************************************99*********77789********************999987666 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   8.8e-24   6.3e-22      16     230 ..     157     367 ..     151     376 .. 0.88

  Alignments for each domain:
  == domain 1    score: 75.9 bits;  conditional E-value: 8.8e-24
   TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthnmqq.aarvsdktaffleGelveegeteqi 230
                 +l+ +  ei+  ++ta +GpsG+Gk++l   +    +  e++  +G++ ++++    k l  +  ++ vG+v+q        ++ + + ++ rlk +  + e++++vee++k+ +l  +v+d++     s+sGG ++r+++a+ + v+P +l+ DePts LD++++ ++ ++++ L +    +v+v h+       + d+  ++ +G++v +g+++++
  MMETSP1061-20121228|5994_1 157 VLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFSEDI-SHGSIAVKNQGNEGKGLARI-PKQMVGVVWQDDLLLGnLTVEETIYFAARLK-MPAHVEVRSLVEEAMKELGLL-HVRDHMI---ASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLgHSVVLVIHQPRTdIFNLLDRLLLLSKGRVVYDGHPKRV 367
                 78999********************99888877766666555.68******999888766554.5789******98877549999********99.69999***************9.8999775...689********************************************9886699******9765167999************99998876 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.1   6.2e-23   4.5e-21       3     200 ..     165     368 ..     163     374 .. 0.84

  Alignments for each domain:
  == domain 1    score: 73.4 bits;  conditional E-value: 6.2e-23
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglik....vakGsvkvagkssrkgrreiGyvp.qrhefawdfpidveqtvlsGragliGllrrpkkadfaa.vadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdl.aeavatcdrvvll.ngrvvadgapdqlq 200
                 +++ +l + +Gp G+Gkt+l   +    +     ++Gs+ v+ +  ++  + +  +p q     w+  + + +  ++        l+ p + + ++ v++a+++  l +++d  +  +sGG+r+rv +a+ + v+psll+ dep +Gld  +  +lv+ ++ l + g++++++ h+  ++  +  dr++ll  grvv dg+p+ ++
  MMETSP1061-20121228|5994_1 165 IHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQ--GNEGKGLARIPkQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSlVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPrTDIFNLLDRLLLLsKGRVVYDGHPKRVR 368
                 566789999*********99877766554111246788888775..333334555562667899*9999999999999999999999999888775489****************************************************************************9625677999**9988358********9886 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.1   6.3e-22   4.6e-20      33     221 ..     171     366 ..     151     375 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.7 bits;  conditional E-value: 6.3e-22
   TIGR01288  33 fgllgpngagkstiarlvlglisp....degkitvlgepvpar..arlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlm.eeaerlcdrlcvleagrkiaegrpda 221
                    +gp g+gk++++ +v   ++     ++g i+v ++   ++  ar+ +  +gvv q d l  ++tv e +    r       e+ + +   ++   l    d  +a++sgg ++r++la+ ++  p ll+ dept+gld  +   + + l+ l+++g++++l  h    +   l drl +l +gr + +g+p+ 
  MMETSP1061-20121228|5994_1 171 TAWMGPSGSGKTSLTSVVANQANFsediSHGSIAVKNQGNEGKglARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPrTDIFNLLDRLLLLSKGRVVYDGHPKR 366
                 5679**************9887541112579***987765544339**********************99987766665555568888888777666677778999*************************************999999*****************985157789******************975 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.1   9.5e-22   6.8e-20       2     192 ..     159     357 ..     158     366 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 9.5e-22
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglek....ptsgavilegkeitepg....pdrm..vvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngp 192
                 + +  ei+  ++ + +g sg gk++l  ++a  ++     ++g++ ++ +  +  g    p++m  vv+q+  ll  ltv e i++a    ++  ++ e r++vee ++ +gl +  d+ ++ +sgg ++rv++a+ + +rp ll+ dep   lda t  +l + l  +v   +  vl++     + + l dr+++l++g 
  MMETSP1061-20121228|5994_1 159 DRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQGNEGKGlariPKQMvgVVWQDDLLLGNLTVEETIYFAARLKMP--AHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPRTDIFNLLDRLLLLSKGR 357
                 567778888889999**************9875431112689**999877776666334467775569*******************876655..57899****************************************************************999999877766666666666777799******9986 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   3.6e-21   2.6e-19      12     234 ..     154     367 ..     144     374 .. 0.84
   2 ?   -2.4   0.0       6.4   4.6e+02      49      84 ..     400     435 ..     398     439 .. 0.84

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 3.6e-21
   TIGR03005  12 eltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkv.rekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgf.arefadrvlffdkGkiveeGkpdei 234
                 +  vld +  e+++ +  a +GpsGsGk+++  ++    +++e  i  +g +  + +g++Gk        l+++ ++ +G+v+q   l+   tv + +  a  + k  a+ e ++   e ++ +Gl   +d++ a +sGG+++rv++a+ + +rp +l+ de+ts ld      +++ l+ l s  + +++lv h+ +    ++ dr+l++ kG++v +G+p+ +
  MMETSP1061-20121228|5994_1 154 RTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFSED-IS-HGSIAVKNQGNEGKG-------LARIpKQMVGVVWQDDLLLGNLTVEETIYFAA-RLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGH-SVVLVIHQPRTdIFNLLDRLLLLSKGRVVYDGHPKRV 367
                 4569*******************************998888775.33.367777888888876.......555536789*******9**9999999998886.55555666777777789999***********************************************99999999999998765.556677776652689*******************876 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 6.4
   TIGR03005  49 letideGsikvegeqlyhmkgrkGklvpadekhlrk 84 
                 l++ +eG++ +  + + h +  +G+l p  +  l++
  MMETSP1061-20121228|5994_1 400 LQQSSEGHVSLADHWVAHRERMQGNLRPNHDSSLAN 435
                 567789*****999999***99***99988877765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   5.6e-21     4e-19      14     219 ..     154     367 ..     141     385 .. 0.85

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 5.6e-21
   TIGR03522  14 kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylk....adsGsvavagedvlkn..slevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevike.iakdktvilsthi.mqevealcdrviiinkGkivadkkleel 219
                 +  +ld +  e+++ +++ ++GP G+Gk++l  +++   +     + Gs+av+++    +  +   ++++G + + + l  +l v e + f a l      ++++ vee +++ Gl + +   i+ +s G r+rv la+ ++  P++l+ dePt+Gld    + + + +k  ++   +v+l  h    ++  l dr++++ kG++v d + +++
  MMETSP1061-20121228|5994_1 154 RTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQGNEGKglARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGlVSLGHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDGHPKRV 367
                 56789*************************999998654311114579999987765555114556899*************************988888899*********************************************************9999888888615678999999997246899***************99876655 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.1     2e-20   1.4e-18       9     188 ..     151     340 ..     143     348 .. 0.85

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 2e-20
   TIGR01189   9 eRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlk....pesGevelndkel..aeqrdelaeellylgHldglKaeLsalEnLkfyaallq....seqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdl 188
                 +R  + +l ++  e+ + ++ +  Gp G+GKt+L  ++a   +     ++G+++++++    +  +  +++ +  +   d l ++L+++E + f a+l      + +  veea++++gL ++ d ++a++s G ++R++la+ ++ +  l + DEPt  lD+++   l ++l+  ++ g +v+l  hq++
  MMETSP1061-20121228|5994_1 151 KRSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQGNegKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMpahvEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPR 340
                 6889999*******************************987651112467999987554310344556767777777778899************9998743323334899****************************************************************************986 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.1   2.5e-20   1.8e-18      27     208 ..     171     359 ..     160     363 .. 0.82

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 2.5e-20
   TIGR01277  27 vailGesGaGkstllnlia...Gflepas.Geikvndkdhtrsapyerp...vsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsl.sdaaaiasqvvvvedGkik 208
                  a +G+sG+Gk++l +++a    f e +s G+i v+++   +    + p   v +++q++ l+  ltv++ i +  +  +    + +  ve++ +++G+ +  + +  ++sGG+r+rv+la+ +v    +l+ dep s ld +    ++  +k l++    +++lv h++  d+ +  ++ +++++G++ 
  MMETSP1061-20121228|5994_1 171 TAWMGPSGSGKTSLTSVVAnqaNFSEDIShGSIAVKNQGNEGKGLARIPkqmVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLG-HSVVLVIHQPrTDIFNLLDRLLLLSKGRVV 359
                 689**************9733257776544*****9998887777766622256689**************998877666666677888999********************************999999***********987766666666666654.567777787636999*************96 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.1   2.9e-19   2.1e-17      15     231 ..     157     366 ..     151     375 .. 0.79

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 2.9e-19
   TIGR01978  15 iLkglnlevkkGevhaimGpnGsGkstLskvlagheky..evtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvel 231
                 +L+ +  e+++ ++ a mGp GsGk  L++v+a + +    +++G+i++k+q           ++ + +  q    +  ++++e +  a+  +      +++++++  ++  ++l ll++       ++    sGGe+kr  + q  +++P+l + De  sGlD  +   ++++++ l +  ++++++ h+ r       d + +l +Gr+v +G+ + 
  MMETSP1061-20121228|5994_1 157 VLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFseDISHGSIAVKNQGNEGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKM----PAHVEVRSLVEEAMKELGLLHVRD-----HMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPRTDIFNLLDRLLLLSKGRVVYDGHPKR 366
                 8999999**************************98875227*******9999877777777777777777788887777777777766655444....344444444444444444444444.....456789********************************9999999******************988544444599*************9765 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   9.6e-20   6.9e-18      12     218 ..     154     366 ..     146     372 .. 0.86

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 9.6e-20
   TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllk....vksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk...ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekee 218
                 ++ vl  ++ e++  +++a +G  g Gkt+l   +  + +    +++G+i+++++  + +   +  k+ ++ v q   ++ +ltvee +  +++ +  +    +++ ee+++   +l ++++     +sGG ++ +++a  +v +P ll+ DePt G+       + k++k l + ++  +l++ q      +l dr+l+l++G+vv +g+ + 
  MMETSP1061-20121228|5994_1 154 RTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQGNEGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAhveVRSLVEEAMKELGLL-HVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPRTDIFNLLDRLLLLSKGRVVYDGHPKR 366
                 577999************************99988877642222678*****999988888777789999*******************9999887766223455556666666555.57888899**************************************************999999*************************9997665 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.3e-19   9.4e-18     945    1145 ..     157     365 ..     148     374 .. 0.84

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1.3e-19
   TIGR01257  945 avdrlnitfyenqitaflghngagktttlsiltgllp....ptsgtvlvggkdietn.l.davrqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrs.grtiimsthhmdeadl..lgdriaiisqgrlycsgtpl 1145
                   +dr+   ++  q+ta++g  g+gkt+  s+++         + g++ v  +  e + l  + +q +g++ q ++l+  ltv e i f a+lk  ++ e +  +e  +++ gl h r+     +sgg ++++s+a  +v    ++v deptsg+d  +  s+   l    s g+++++  h+   +d+  l dr+ ++s+gr+   g p 
  MMETSP1061-20121228|5994_1  157 VLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQGNEGKgLaRIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSlGHSVVLVIHQ-PRTDIfnLLDRLLLLSKGRVVYDGHPK 365 
                  46999999999****************99999876541111345777777666664324145699*******************************999998888888899**************************************************999988877647888877765.455552356***********9999986 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.9   0.0   1.6e-19   1.2e-17      11     216 ..     160     366 ..     151     373 .. 0.85

  Alignments for each domain:
  == domain 1    score: 61.9 bits;  conditional E-value: 1.6e-19
   TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrllnrlieP....taGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd.ldealrlgdrivilkaGeivqvGtPde 216
                  +  ei+  ++   +G+sGsGk++l  ++    +     + G i +  +     + + l  + ++ +++v q+  l+   t+ + i ++ +l+  ++ e +    ea+k ++l + +d+    +sGG ++rv la+ + + P ll+ de+ s ld  +  +l + l+ l +   +++v++ h    + + l dr+ +l +G +v  G P  
  MMETSP1061-20121228|5994_1 160 RIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFsediSHGSIAVKNQ---GNEGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSL-GHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDGHPKR 366
                 56667777788899**********9999876554400014555554333...234566888999*********************************************************************************************************875.5556666665267889****************999976 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.1   2.8e-19     2e-17      21     223 ..     158     362 ..     150     373 .. 0.86

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 2.8e-19
   TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircv....nllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe.mdvvkricdevavidkgeliekg 223
                 ld +   +   q+   +g sg+gk++l   v    n+ e  ++g++ v  +       a +   ++ +g+++q   ll   tv + + +   l+  ++ +++  v+e +  +gl + +d   + +sgg+++rv++a+ +   p +l+cde ts ld +t+ s+++ lk +   lg +++l+ h+    + ++ d++ +++kg+++ +g
  MMETSP1061-20121228|5994_1 158 LDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVanqaNFSEDISHGSIAVKNQGNEGKGLARI--PKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLV-SLGHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDG 362
                 6777777778899999********99988765555899999****9998776544333333..45679****************************************************************************************************996.688888888886234567889999999999998766 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   4.5e-19   3.2e-17      42     252 ..     160     367 ..     144     373 .. 0.86

  Alignments for each domain:
  == domain 1    score: 60.4 bits;  conditional E-value: 4.5e-19
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd.ldealklGnriaimegGrivqlgtpeei 252
                  +  +++  +++  mG sGsGk+sl   v   +  s     +++++  v  +  + + l ++ ++ v +v+q   ll  +tvee + f   l+  a+ e+r+ vee ++ +gl + +d+ +  +sGG ++rv la+ + +   +l+ deP s ld      l   l  l   l + +v+v h    + + l +r+ ++ +Gr+v  g p+ +
  MMETSP1061-20121228|5994_1 160 RIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFSE---DISHGSIAVKNQGNEGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLV-SLGHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDGHPKRV 367
                 55666777778889***********998865554432...44555555555556788999999***************************************************************************************************99998886.589999999998357899****************9999865 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   1.0   3.7e-18   2.7e-16     335     530 .]     141     339 ..     121     339 .. 0.75

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 3.7e-18
   TIGR02868 335 lelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallagll....dplkGevtldgvsvaslsesev.rrvvsvlaqdaHlF.dttvreNlrlarpdatdeellaaLervgLadwlra.L.pdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthrl 530
                 l l++ +  ++ + + vl++++ +++p + +a +G+sG+GK+ L +++a       d ++G++++++          + +++v v+ qd  l  + tv e + +a+          + ++v+  +++++ + + Gl  +  ++ a++SGGer+R+ lA  ++    +l+ DEPt +LDa+t+ +l+++L   ++ g+ vvlv h++
  MMETSP1061-20121228|5994_1 141 LSLKRNRSPRKRSRTlVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQAnfseDISHGSIAVKNQGNEGKGLARIpKQMVGVVWQDDLLLgNLTVEETIYFAARLK-------MPAHVEVRSLVEEaMkELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKgLVSLGHSVVLVIHQP 339
                 5556666666677777*******************************99866222356778888877443333333332346777666655441446666666665543.......333444444443322146999999999***********************************************88999*********85 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.1     7e-18     5e-16     465     669 ..     154     365 ..     147     369 .. 0.84

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 7e-18
   TIGR03797 465 gplvLddvslkiepGefvaivGaSGsGKStllrlLLg...F.ekPesGsvlyDGqdlekldvqavRrql.GvVLQngrllsg.sileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl...kvtRiviAHRLST..irnadrilvleeGrvveqGsye 669
                  +lvLd++  +i+p +  a +G+SGsGK +l  ++     F e  ++Gs++   q  e+  ++++ +q+ GvV Q+  ll + ++ e+i  +a+l + +  e+ ++  +ee +k+  +gl  v +   +++SGG r+R+ +A+ +v +P +l+ DE TS LD +t    +++l+ l     + +++ H   T   +  dr+l l++Grvv  G+ +
  MMETSP1061-20121228|5994_1 154 RTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANqanFsEDISHGSIAVKNQGNEGKGLARIPKQMvGVVWQDDLLLGNlTVEETIYFAARLKMPAHVEVRSL--VEEAMKE--LGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLvslGHSVVLVIHQPRTdiFNLLDRLLLLSKGRVVYDGHPK 365
                 679*****************************999643336466789****9999999999999999865******998876367889999999***999998766..5777777..69999999****************************************999988887652116788889996655414558************999865 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.1   1.5e-17   1.1e-15     328     540 ..     152     367 ..     137     371 .. 0.80

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 1.5e-17
   TIGR01842 328 eekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaakla.gvhelilrlpkGYdteig......egGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrps..llelvdkilvlkdGalkafGereev 540
                 ++++ +l  i  ++++ +  a +GpsgsGk+sL+ ++   + + s  +   ++++k+  + + Gk +  +P++   + G v ++   +++ + +e ++ aa+l   +h  + +l +    e+g      +  a++sgG r+R++La  +   P l+v DeP + LD++    l+k lk l   + +vv++ h+p+  + +l d++l+l++G++   G+ ++v
  MMETSP1061-20121228|5994_1 152 RSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVA-NQANFSEDISHGSIAVKN--QGNEGKGLARIPKQ---MVGVVWQDDLLLGNLTVEETIYFAARLKmPAHVEVRSLVEEAMKELGllhvrdHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQPRtdIFNLLDRLLLLSKGRVVYDGHPKRV 367
                 455678999************************98765.555566666666666665..55569999999987...6799999999999988889999999986246766666666555555532222255689********************************************************997643389*************9988887766 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.1   2.3e-17   1.7e-15     300     519 ..     158     371 ..     144     378 .. 0.85
   2 ?   -3.5   0.0       8.3     6e+02     279     322 ..     536     579 ..     531     591 .. 0.79

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 2.3e-17
   TIGR03269 300 vdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGra...kkyiGllhqeyalyphrtvlenlteaiglelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshd.mdfvlevcdraalmrdGkivkiGdpeeiveel 519
                 +d +  e++  ++   +G sG+Gkt+l+ ++a        ++   + +  + + ++g +++G a   k+ +G+++q+  l    tv e +  a  l++p  + +r     l+   ++e    ++ d++   +s Ger+rv+laq ++  p +++ dept  +d  t  ++ ++ lk    l+++ v+v h+    + ++ dr  l+ +G++v  G+p+ + + l
  MMETSP1061-20121228|5994_1 158 LDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQA-----NFSEDISHGSIAVKNQGNEGKGLAripKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRS----LVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKT-LKGLVSLGHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDGHPKRVRSYL 371
                 68888888888999999***********9998654.....455567778889999999999976445799********************99******99887665....5556667777788999****************************************9999886.6888999999999999733458899******************9987665 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 8.3
   TIGR03269 279 iikvkdvskryisvdrGvvkavdnvslevkekeifGlvGtsGaG 322
                 +++ +  +k y  +     k v + +l +    ++G+v    aG
  MMETSP1061-20121228|5994_1 536 LLRRERAKKLYRVLPYFFAKIVSDSTLSILMPMVYGIVTYWTAG 579
                 66777788888888888999999999999999999999988888 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0     1e-17   7.3e-16     462     675 ..     147     364 ..     115     371 .. 0.79

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 1e-17
   TIGR01846 462 rfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqr.lyvPe...kGrvlvdgvdlaladPawlrrq.vgvvlqenvlfsr.sirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlre.ickgrtviiiah..rlstvraadrilvlekGkivesGkh 675
                 r   k+  + vl+ +  +i++ ++   +GpsGsGk+ lt ++    +  e   +G + v ++       a + +q vgvv q+++l+ + ++ + i  a      ++v   + +  a   ++el  G     +   a++sGG r+r++la+ +v+ P +l+ de ts ld+ +  ++ + l+  ++ g  v+ + h  r +     dr+l+l kG++v +G+ 
  MMETSP1061-20121228|5994_1 147 RSPRKRSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANqANFSEdisHGSIAVKNQGNEGKGLARIPKQmVGVVWQDDLLLGNlTVEETIYFAARLKMPAHVEVRSLVEEA---MKEL--GLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGlVSLGHSVVLVIHqpRTDIFNLLDRLLLLSKGRVVYDGHP 364
                 5555667788******************************99541333322449*****9998888888888776269*******99652788888887665555666554444433...3333..555555566799******************************************99736789****9999566777999*************99975 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   1.4e-17   9.9e-16       9     211 ..     165     365 ..     157     373 .. 0.84

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 1.4e-17
   TIGR02770   9 lkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal...alrgreialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithD.lgvvaeladevavmekGkivergtvk 211
                 ++  +++a +G sGsGk+  ++ + +  +     ++G+i+++++        ++ ++ ++++ q+        lt++e +  + + +   + + ++l+ ea+++ gL +++   ++    +sGG  +Rv +a  ++++++ll+ DePt+ lD+++++ ++k+l+ l++  g +++l+ h   + + +l d +++++kG++v  g++k
  MMETSP1061-20121228|5994_1 165 IHPFQLTAWMGPSGSGKTSLTSVVANQANFSEDISHGSIAVKNQGNEGKglaRIPKQMVGVVWQDDLL--LGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVR---DHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSL-GHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDGHPK 365
                 556678999********877777777777788899*****9988777666678999999*****9765..455889999998888888888999999**********9655...566779**********************************************987.5666666666156699***************887665 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   3.1e-16   2.2e-14      18     230 ..     158     368 ..     155     372 .. 0.88

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 3.1e-16
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktr....pdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelak.ersvvvvehD.mefvrelaekvtvlheGkvlaeGsldevq 230
                 l+++  ++++ +l + +Gp G+Gkt l  v++ +++     ++Gs+ +k++   ++  a+i ++ +g  +q   ++ +ltv e +  a++        l + ++ e+++ +ee+++ +gL + +d++ +++s G+++++ ++  +v +p+ll+ DeP++G+ ++   +  + lk l +  +svv+v h   + + +l +++  l++G+v+ +G+ ++v+
  MMETSP1061-20121228|5994_1 158 LDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQGNEGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAAR--------LKMPAHVEVRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSlGHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDGHPKRVR 368
                 56778899999*********************99872222467********999*****************************9999876........455566788999****************************************************99999999999887542788777777625679999999************9987776 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   3.4e-16   2.4e-14      12     208 ..     154     364 ..     144     374 .. 0.84

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 3.4e-16
   TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGllr....ktsGeilldgre.....wtrkdlkkiGsliesPalyenltarenlkvrtlll...glp.esrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshi.lsevelladhiGiiseGklkyekki 208
                 +  v++ +  +++  ++ + +Gp G+Gk++l  +++   +     + G+i ++++      ++r   + +G++ ++  l +nlt +e +   + l+   +++ +s +ee +k ++l + + +     s G ++r+ +a  ++ +P ll+ dePt Gld      l + +k + + G +v+l  h   +++ +l d + ++s+G++ y+++ 
  MMETSP1061-20121228|5994_1 154 RTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQGnegkgLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKmpaHVEvRSLVEEAMKELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDGHP 364
                 4568999***************************998654211135799*99766511111566666778******************99988776222344257789999***********************************************************************9973689******************9865 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.1   5.1e-16   3.7e-14     494     694 ..     157     363 ..     150     372 .. 0.72

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 5.1e-16
   TIGR03796 494 liedfslslkpGqrvAlvGgsGsGkstiaklvaGlye....pwsGeilfDgkpreeip.revlanslalvdqdivlfe.gtvrdnltlwdetipeedlvrAakDAaihdvilarpggye..aelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr...rRgctciivaH..RLstiRdcdeiivlerGkvverGt 694
                 +++ ++ +++p q  A +G+sGsGk  ++ +va   +     ++G+i++ ++  e     ++ ++ + +v qd +l++  tv + + +        + ++      ++  + +  +++   +      a +sGG+r+R+ +A  +v +Ps+L+ DE ts LDa+t  ++++ l+     g ++++v H  R       d++++l +G+vv  G 
  MMETSP1061-20121228|5994_1 157 VLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQGNEGKGlARIPKQMVGVVWQDDLLLGnLTVEETIYFA-------ARLKMPAHVEVRSLVEEAMKELGllHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKglvSLGHSVVLVIHqpRTDIFNLLDRLLLLSKGRVVYDGH 363
                 678889999***********************976431111467999998876665441456678899999986666404555544433.......33333333344444443333332103334456789*************************************9998873336899*******4444456678************9996 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.2   0.1     7e-16   5.1e-14      19     232 ..     150     361 ..     143     378 .. 0.80

  Alignments for each domain:
  == domain 1    score: 50.2 bits;  conditional E-value: 7e-16
   TIGR02769  19 gkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkq...rkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrl.vqkfaqrvlvldeGqivee 232
                 +k++r+ vld +  +++  +  a +G sG+Gk+ l+ ++   ++  + ++s+    +++  +++   ++  ++ v +v+qd       + +v+e i    r l+   + e +  ++e +++++l  +v d++ + +sGG  +r+++a+ + v+P l+v de  s ld    +s+++ lk l    G +++++ h  r  + ++ +r+l+l +G++v +
  MMETSP1061-20121228|5994_1 150 RKRSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQAN-FSEDISHGSIAVKNQGNEGkglARIPKQMVGVVWQDDLLL--GNLTVEETIYFAAR-LKMPAHVEVRSLVEEAMKELGLL-HVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLV-SLGHSVVLVIHQPRTdIFNLLDRLLLLSKGRVVYD 361
                 689999******************************99876554.45567766555555443331113445667999****8754..45678887765544.44445566677788889999986.46788999********************************************9996.6899999999998864889*************976 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00034     0.024      16     119 ..     157     261 ..     148     273 .. 0.85
   2 !   38.1   0.2   1.9e-12   1.4e-10     381     482 ..     258     359 ..     244     363 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00034
   TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmkvls..gvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvl 119
                  ld i  ++++ ++ +  G  G+Gk++l  v++  + +     +G i  +++  + +++    ++ + ++ q+  l+ +l+v e i++   + ++   ++   +v 
  MMETSP1061-20121228|5994_1 157 VLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVAnqANFSEDISHGSIAVKNQGNEGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPA-HVEVRSLVE 261
                 58999999**********************9982245666778999******************************************99998887.555555554 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 1.9e-12
   TIGR02633 381 kaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaii.vvsselaevlGlsdrvlvigeGklk 482
                 + +ee++k+l +  +  d  ia++sGG++++  la+ ++++p +l+ dept G+d  +   + k ++ l+  G +++ v+    ++++ l dr+l++ +G++ 
  MMETSP1061-20121228|5994_1 258 SLVEEAMKELGLLHVR-DHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVlVIHQPRTDIFNLLDRLLLLSKGRVV 359
                 3467788888877655.567*****************************************************998725567789***************986 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.1   2.5e-15   1.8e-13     347     551 ..     156     363 ..     145     369 .. 0.81

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 2.5e-15
   TIGR02203 347 ealdsislkveaGevvalvGrsGsGkstlvnllpR...Fye.pdsGeillDgvdladlkLasLRrq.valvsqd.vvLFddtiaenvaYgeleev.deaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk.gRttlviah..RLstiekaDrivvlddGkiverGt 551
                  +ld i  ++++ + +a +G+sGsGk++l ++++    F e +++G+i + ++  +   La + +q v +v qd  +L + t+ e + ++++ ++  + ev++ +++a         + Gl     +  + +sGG R+R+++a  ++    +L+ De ts LD+     + ++L+ l   g   +++ h  R    +  Dr++ l +G++v  G 
  MMETSP1061-20121228|5994_1 156 LVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANqanFSEdISHGSIAVKNQGNEGKGLARIPKQmVGVVWQDdLLLGNLTVEETIYFAARLKMpAHVEVRSLVEEAMK-------ELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSlGHSVVLVIHqpRTDIFNLLDRLLLLSKGRVVYDGH 363
                 589*************************99999752226543789*****************988825677786256668899999999998655145688888888753.......46888888888899********************************************998734555556673344456789************9885 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   8.4e-15     6e-13     489     692 ..     157     364 ..     153     370 .. 0.67

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 8.4e-15
   TIGR01193 489 vledislkikknekitlvGlsGsGkstlakllvk...ff.qaesGeillngkslkdidk.helrqlinylPqePfifsGsilenll.lgakenvsqeeikkaveiaeikddiekl..plGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkive...nllklkdktiifvah..rlsvakksdkiivldeGkiieqGsh 692
                 vl+ i  +i+  + ++ +G sGsGk++l+ ++ +   f  + ++G i + ++  +      + +q++  + q+ +++    +e+ + + a+ ++           +e+++ +e+   +lG+     +  +sisgG ++r++la+ +++   +l+ de ts ld  t   +v+    l++l + ++++v h  r ++ +  d+++ l++G+++ +G+ 
  MMETSP1061-20121228|5994_1 157 VLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANqanFSeDISHGSIAVKNQGNEGKGLaRIPKQMVGVVWQDDLLLGNLTVEETIyFAARLKMP--------AHVEVRSLVEEAmkELGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKtlkGLVSLGH-SVVLVIHqpRTDIFNLLDRLLLLSKGRVVYDGHP 364
                 899999**********************9998762213344566666665444333222023356666666666665443333333033333222........2234444443321134554444555689********************************9998766651115678855.56666665689*******************9975 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.6   0.1   3.6e-14   2.6e-12     490     698 ..     151     365 ..     148     372 .. 0.75

  Alignments for each domain:
  == domain 1    score: 43.6 bits;  conditional E-value: 3.6e-14
   TIGR00958 490 srpdkpvlkdLtftlepGevvalVGPsGsGKStvaallen...lYqP.tgGqvllDgkplkeydhkyl.hrkvalVgqEPvlfsg.svreNiaYGltkte..deevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliah.rLstvekadkilvlkkgsvvelGthk 698
                 +r+++ vl  +   ++p + +a  GPsGsGK +  +++ n   + +    G++ + ++  +      + ++ v++V q+ +l +  +v e i +  + +   + ev++ +++a+ +  + +         +     +sgG ++r+ +A  +v +P +L+ De tS LDa       ++l+   s     vl+i + r  + +  d+ l+l+kg+vv  G+ k
  MMETSP1061-20121228|5994_1 151 KRSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANqanFSEDiSHGSIAVKNQGNEGKGLARIpKQMVGVVWQDDLLLGNlTVEETIYFAARLKMpaHVEVRSLVEEAMKELGLLH-------VRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDAttalSLVKTLKGLVSLGHSVVLVIHQpRTDIFNLLDRLLLLSKGRVVYDGHPK 365
                 588999*************************9877776551115554368*******99887776666156689999*9998865388888888766544135555555555555443333.......344455779********************************65555555566666666666666665567889999***********9988765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.13       9.5     335     373 ..     155     193 ..     144     210 .. 0.81
   2 !   40.3   0.0   4.6e-13   3.3e-11     129     236 ..     246     358 ..     225     378 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.13
   TIGR03719 335 klliddlsfklpkggivGviGpnGaGkstlfklitgkek 373
                  l++d++  ++ +  +   +Gp G+Gk+ l  +++++ +
  MMETSP1061-20121228|5994_1 155 TLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQAN 193
                 56788999999999999999**********999998765 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 4.6e-13
   TIGR03719 129 ekidaadawdldskleiamdalrl.peedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey...kGtvvavthd.ryfldnvaeWileldrGeg 236
                 ++++     ++ s +e am+ l l    d+ ++++sGGe++rv+l++ ++ +P ll+ dePt  lda +   l k lk       +vv+v h  r  + n  + +l l +G+ 
  MMETSP1061-20121228|5994_1 246 ARLKMPAHVEVRSLVEEAMKELGLlHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLvslGHSVVLVIHQpRTDIFNLLDRLLLLSKGRV 358
                 55556666788889999**9998625689****************************************99999998865111457888877537777777777777777765 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.1     4e-14   2.9e-12     349     557 ..     151     363 ..     141     370 .. 0.74

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 4e-14
   TIGR02204 349 arpdqkaldgldltvrpGetvalvGPsGaGkstllelllr...fy.dPqsGailldGvdlreldpeelrer.lalvpqdsalfaa.svleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk.grttlviahrLat..vlkadrivvldkGriveqGt 557
                 +r+ +++ld +  +++p +  a +GPsG+Gk+ l +++     f  d ++G+i +  +       + + ++ + +v qd  l+ +  v+e i +       ++ve  +   ea    ++l  G          ++sGG ++r+++a+ i+    +L+ de ts Lda +   + + l+ l++ g+  +++ h+  t      dr++ l kGr+v  G+
  MMETSP1061-20121228|5994_1 151 KRSRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANqanFSeDISHGSIAVKNQGNEGKGLARIPKQmVGVVWQDDLLLGNlTVEETIYFAARLKMPAHVEVRSLVEEAM---KEL--GLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSlGHSVVLVIHQPRTdiFNLLDRLLLLSKGRVVYDGH 363
                 4677899***************************99996522243356788888877666666555554441567888877765426777788876666666666554444443...333..3333333445689**********************************999999999987645666666665444215668************9996 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.1   9.9e-14   7.1e-12      22     208 ..     156     338 ..     149     346 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 9.9e-14
   TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLL.dePtasLdaanrkvvvelikeakargaaligifhd 208
                  vl++++ e++  +l+a +G+sG+Gk +l  +  an    s    + h    v+    + + +  + ++ +g v q    +  ++  e +  +++ +  ++ e r+ ++e+++ l +     ++  a  sGGe++Rv +a+ +++ rP LL+ dePt+ Lda++    v+ +k + + g +++ ++h+
  MMETSP1061-20121228|5994_1 156 LVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSV-VANQANFSE--DISHGSIAVKNQGNEGKGLARIPKQMVGVVWQDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHM-IASISGGERKRVSLAQEIVV-RPSLLVcDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQ 338
                 5899999*******************987655.555443333..33454444444555668889999999999999877899999999998888887778888888888888888874443444.4799****************.78776549*****************************99997 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.9   7.1e-13   5.1e-11      24     221 ..     165     363 ..     158     370 .. 0.73
   2 ?   -2.0   0.0         6   4.3e+02      75     101 ..     560     586 ..     555     588 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 7.1e-13
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarll....adaGevtyesrsrelellalseaerrlllrtewGlvhqnprGl.rmevsaGanigerllavgarhyGkiraaakwlekveidaari.kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth...lavarllaqrllvmkqGrvvesGl 221
                 ++p ++ + +G sGsGk++l + +a++       ++G++  +++++  e   l+      + +   G+v q+   l  ++v      + rl +    h   +   ++ ++++ + + r    a++sGG ++r+ +a+++v rp l++  ept Gl +  a  l   l+glv  lg +v++v h     +  ll +rll++ +Grvv  G 
  MMETSP1061-20121228|5994_1 165 IHPFQLTAWMGPSGSGKTSLTSVVANQANfsedISHGSIAVKNQGN--EGKGLAR-----IPKQMVGVVWQDDLLLgNLTVEETIYFAARLKMPA--HVEVRSLVEEAMKELGLLHVRDhMIASISGGERKRVSLAQEIVVRPSLLVCdEPTSGLDATTALSLvkTLKGLVS-LGHSVVLVIHqprTDIFNLL-DRLLLLSKGRVVYDGH 363
                 6788889999*********999999865411112455665555553..3333332.....33445799999999652678999999999987763..5544444445566666666555366899*******************99988******77766555377999998.**********6633455555.6***********9986 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 6
   TIGR02323  75 aerrlllrtewGlvhqnprGlrmevsa 101
                 +   +l+   +G+v+  ++Glr +v+a
  MMETSP1061-20121228|5994_1 560 STLSILMPMVYGIVTYWTAGLRPTVAA 586
                 55567888899***********99987 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.12       8.5     623     653 ..     158     188 ..     146     225 .. 0.70
   2 !   31.1   0.1   2.1e-10   1.5e-08     811     890 ..     263     338 ..     231     366 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.12
   TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLindi 653
                 l  i  +i   +lt+  G+sgsGk +L   +
  MMETSP1061-20121228|5994_1 158 LDRIRTEIHPFQLTAWMGPSGSGKTSLTSVV 188
                 5556666666778888888888888886554 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 2.1e-10
   TIGR00630 811 llvdvGLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehn 890
                 ++ ++GL +++  +   ++sGGe +rv La+e+  r     l + DePt GL       L++ l+ lv+ G++vv++ h 
  MMETSP1061-20121228|5994_1 263 AMKELGLLHVR-DHMIASISGGERKRVSLAQEIVVR---PSLLVCDEPTSGLDATTALSLVKTLKGLVSLGHSVVLVIHQ 338
                 45566666666.455667888888888888888765...56888888888888888888888888888888888887774 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   1.9e-09   1.3e-07     362     552 ..     169     363 ..     157     370 .. 0.68

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 1.9e-09
   TIGR01192 362 qtvaivgptgagkttlinll..qr..vydpksgqilid..gvdiatvtreslrksiatvfqdagll.nrsirenirlgredatdeevveaakaaaasdfiekrlk..gydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaid.alrknrttfiiah..rlstvreadlvlfldqgrliekgs 552
                 q  a +gp+g+gkt+l  ++  q     d ++g i +   g + + ++r   ++ +  v+qd  ll n ++ e i +       + v         + ++e+ +k  g + +     + +sgger+r+++a+ i+    +lv de ts ld  t   + +++   ++   +  ++ h  r       d +l+l +gr++  g 
  MMETSP1061-20121228|5994_1 169 QLTAWMGPSGSGKTSLTSVVanQAnfSEDISHGSIAVKnqGNEGKGLARI-PKQMVGVVWQDDLLLgNLTVEETIYFAARLKMPAHV-------EVRSLVEEAMKelGLLHVRDHMIASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKgLVSLGHSVVLVIHqpRTDIFNLLDRLLLLSKGRVVYDGH 363
                 667899********998776223311346678888875224444455443.356788899998887466888888775443333222.......2333444444411444455556689***********************************98765555515566777777777224444566899*********98875 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   7.3e-07   5.3e-05    1234    1410 ..     157     337 ..     147     362 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 7.3e-07
   TIGR01271 1234 vlqdlsfsveagqrvgllgrtgsgkstllsallrllstegeiqidgvswnsvtlqkwrkafgvipqkvf..il.sgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyv..lsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafs.nctvilseh 1410
                  vl+ +   +++ q    +g +gsgk++l s +   ++   +i+   ++ +     +  k +  ip+++   ++    +  nl   e        k+   v ++s++e+  + l +  v   ++  +s g ++ + la+ i+ +  +l+ dep++ ld  t   + ktlk   s   +v+l  h
  MMETSP1061-20121228|5994_1  157 VLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQANFSEDISHGSIAVKNQG--NEGKGLARIPKQMVgvVWqDDLLLGNLTVEETIYFAARLKMPAHVEVRSLVEEAMKELGLLHVRDHMIasISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSlGHSVVLVIH 337 
                  788889999999999999********999999999988877776666544332..34566777776543112212345568888888777778899999*************9998887777734678999******************************99*****987662234555555 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.9e-06   0.00028     649     839 ..     153     358 ..     123     368 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.9e-06
   TIGR00957 649 depptlngltlsipegalvavvgqvgcgkssllsallaem....dkvegkvalkgs......vayvpqqa....w.....iqndslrenilfgkaleekyykavleac.alladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthg..isylpqvdviivlsdgki 839
                 +    l+ +  +i    l a +g+ g gk+sl s +  +     d   g +a+k        +a +p+q     w     + n +++e i f  +l+ + + +v       + +l +l   d+         +sgg+++rvsla+ +     + + d+p s +da  a  + + + g   l  +++ +lv h      +   d +++ls+g++
  MMETSP1061-20121228|5994_1 153 SRTLVLDRIRTEIHPFQLTAWMGPSGSGKTSLTSVVANQAnfseDISHGSIAVKNQgnegkgLARIPKQMvgvvWqddllLGNLTVEETIYFAARLKMPAHVEVRSLVeEAMKELGLLHVRDHM-----IASISGGERKRVSLAQEIVVRPSLLVCDEPTSGLDATTALSLVKTLKGLVSL--GHSVVLVIHQprTDIFNLLDRLLLLSKGRV 358
                 55566788888888899999************99887655112134468888884322233378888884222232222233555566666666666555444433221234555555555543.....2469*********************************999888877665544..566777777522556677777777777777 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.1   1.5e+02     485     500 ..     174     189 ..     159     191 .. 0.91
   2 ?    9.0   0.0    0.0012     0.088     562     614 ..     254     310 ..     246     326 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.1
   TIGR00954 485 iGPnGcGKsslfRilg 500
                 +GP G GK sl  +++
  MMETSP1061-20121228|5994_1 174 MGPSGSGKTSLTSVVA 189
                 7**********99887 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0012
   TIGR00954 562 vkLedller...eggwdavqdWk.dvLsgGekqRiamARlfyHkPkfavLDEctsAv 614
                 v++  l+e+   e g+  v+d +   +sgGe++R+++A  +  +P   v DE ts +
  MMETSP1061-20121228|5994_1 254 VEVRSLVEEamkELGLLHVRDHMiASISGGERKRVSLAQEIVVRPSLLVCDEPTSGL 310
                 666666665111567999999884689***************************965 PP

>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2     0.001     0.073     440     504 ..     279     340 ..     275     354 .. 0.92

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.001
   TIGR00634 440 vASGGELSRvmLalkvvlsssaavttliFDEvDvGvsGktaqaiakkLakl.sekkQvlvvTHlpq 504
                 + SGGE  Rv+La ++v+  s     l+ DE   G+   ta  + k L+ l s  + v+ v H+p 
  MMETSP1061-20121228|5994_1 279 SISGGERKRVSLAQEIVVRPS----LLVCDEPTSGLDATTALSLVKTLKGLvSLGHSVVLVIHQPR 340
                 569************999887....8***********************864889*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        87  (0.0212092); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 1.15u 0.18s 00:00:01.32 Elapsed: 00:00:00.97
# Mc/sec: 1017.81
//
Query:       MMETSP1061-20121228|5998_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1203.74
//
Query:       MMETSP1061-20121228|5996_1  [L=1202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.14s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 3777.40
//
Query:       MMETSP1061-20121228|6002_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 847.51
//
Query:       MMETSP1061-20121228|6004_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   15.5   5.4     0.0061   14.1   3.9    1.4  1  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein
  ------ inclusion threshold ------
      0.021   12.1   3.9      0.048   11.0   2.7    1.7  1  TIGR00688 rarD: protein RarD


Domain annotation for each model (and alignments):
>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   3.9     3e-06    0.0061     188     279 ..     100     189 ..      65     191 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3e-06
   TIGR03340 188 glvllllylkrrkraiveearqilasatlggll.igsaYalvlyAmtllpvalvvalrevsivlavllgilllnekvtlkrllgvviivaGlv 279
                 ++v+ ++ +   k+a+ e   ++la ++ ggl+ ++s +al+l  +    +  v a   ++iv   + gi++++e+   ++++  ++i+ G+v
  MMETSP1061-20121228|6004_1 100 SIVTDTYAVTLMKQAQAESSAKKLA-MSYGGLFlSLSGFALALKSIDVSIAYAVWAAAGTAIV--TIAGIVFFGERLDATKIICLIMIILGVV 189
                 4555566666666666666555555.4555555156778888777766666666666666666..5779999999999999999999999987 PP

>> TIGR00688  rarD: protein RarD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   2.7   2.3e-05     0.048     109     138 ..     160     189 ..      91     194 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.3e-05
   TIGR00688 109 vsvvlGivflkeklsrlklvaviiailGvi 138
                 +  ++Givf++e+l+  k++ +i+ ilGv+
  MMETSP1061-20121228|6004_1 160 IVTIAGIVFFGERLDATKIICLIMIILGVV 189
                 44578***********************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1250.75
//
Query:       MMETSP1061-20121228|5999_1  [L=712]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (712 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 3132.54
//
Query:       MMETSP1061-20121228|6000_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1671.86
//
Query:       MMETSP1061-20121228|6008_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-16   57.2   0.0    5.1e-16   56.4   0.0    1.4  2  TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
    0.00017   19.1   0.0    0.00036   18.0   0.0    1.5  1  TIGR03590 PseG: pseudaminic acid biosynthesis-associated protein PseG


Domain annotation for each model (and alignments):
>> TIGR01133  murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0      0.49     1e+03       7      28 ..      13      34 ..      11      36 .. 0.82
   2 !   56.4   0.0   2.5e-19   5.1e-16     168     350 ..     219     399 ..     165     402 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 0.49
   TIGR01133  7 kvvlagGGTGGifPalAvaeel 28
                ++++++ G G +  a+A+ ++l
  MMETSP1061-20121228|6008_1 13 QILMSATGGGHLASAIALEDAL 34
                6889999999999999998887 PP

  == domain 2    score: 56.4 bits;  conditional E-value: 2.5e-19
   TIGR01133 168 relpaaka.dlkarenkltilvlGGSqGAkilNelvpkalaklaek...lilviiqagkqdlekvkrayselg.iaekieefidndmaaaykaadLvIsRAGAstvaElaavglPailiPypsaaddqyyNakeledagaglvleqkellteklveklkkllkdearleemaeaaqklakkkaakrla 350
                 +++++a+  ++    + +t+lv+GG  G   + ++++++ + l +     ++v++++++q++++  + ++  + i+ +i+ f+  +m + +ka+d  ++ AG +t+aE ++ glP  l+ y    +++  N  ++ed g g++  + +     +++ +++ lk++++l +m++aa  +a+++a+ ++a
  MMETSP1061-20121228|6008_1 219 SPIEVAEVrQELGIHDIPTVLVVGGGDGMGGIVDIASNLGKSLGNDgskYQMVVVCGNNQQAQQKLKQMDWPEgIEVNIQGFVR-NMDEWMKASDCLVTKAGPGTIAEASICGLPCMLFAYL--PGQEEGNIPFVEDSGFGKYSSDPN----DIADTVSSWLKSPKKLRTMKQAALAAARPSATLDIA 399
                 4444555567778889***************************99888555666667666666555555554459*********.6********************************9876..678999*************99988....77888888999999999************9987776 PP

>> TIGR03590  PseG: pseudaminic acid biosynthesis-associated protein PseG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.8e-07   0.00036     178     272 ..     241     341 ..     216     346 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.8e-07
   TIGR03590 178 lGgvDkknltlkllkalaeek....kklkitvvvgssnpnleelkkfvkeye.kiilledvenmaelmaeadlaig.AaGstswEravlglPslvivlaeN 272
                 +Gg D       + + l ++      k+++ vv g+++++ ++lk++   +  ++++  +v nm e m+ +d ++  A+ +t  E+ ++glP +++++   
  MMETSP1061-20121228|6008_1 241 VGGGDGMGGIVDIASNLGKSLgndgSKYQMVVVCGNNQQAQQKLKQMDWPEGiEVNIQGFVRNMDEWMKASDCLVTkAGPGTIAEASICGLPCMLFAYLPG 341
                 455555544444444444443344499*********999999999876555546668999************99972555899*********999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 2259.65
//
Query:       MMETSP1061-20121228|6010_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 929.20
//
Query:       MMETSP1061-20121228|6011_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06   10.4  29.2      0.067   10.2  20.2    1.2  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2  20.2   1.6e-05     0.067      69     150 ..     108     180 ..      40     185 .] 0.45

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.6e-05
   TIGR02794  69 eepkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEa.kakaeaeaKae 150
                 +e ++ r+k++ +++   ++k ++ q++ ke    +  a+ka++ a ea+k+++++k++a  +kak  +Ea kak+e  +  +
  MMETSP1061-20121228|6011_1 108 TEGTPVRTKQEPEEQVRVATKIEPPQEEAKEA---KSSAKKAKRDAKEARKRERAEKREA--KKAK--KEAkKAKKEG-K--K 180
                 23333444444433333333333333333333...2223332233333333333333333..2222..2331122222.1..1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       440  (0.107265); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 678.28
//
Query:       MMETSP1061-20121228|6012_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052    9.0   0.0      0.069    8.7   0.0    1.0  1  TIGR02102 pullulan_Gpos: pullulanase, extracellular


Domain annotation for each model (and alignments):
>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   1.7e-05     0.069     991    1106 ..      16     157 ..       3     161 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 1.7e-05
   TIGR02102  991 glkldpltavvvkvgekease.....ktapkkeeeseadkekkedkdeskdkdkvaeaenkesktpagskken.....................eeveksskekkeekldkeaklpktaeksskllllagiilllllatlll 1106
                  gl ld+   +vv   +++ s       +a++ ++ + +++++++++d +  ++   +++n+++ +  + + ++                       + k++++ +e   +  ++ p+ta+  +++l+++ +i+++ll+  +l
  MMETSP1061-20121228|6012_1   16 GLCLDSRMVTVVCGDDEDVSAahyddGVAEEGQRREAQPEPESDTNDRTAMSQTPGNQQNRKPGNENECDGDEkpsfgmgsqfsspsplptttrTTAAKNQRNLRERVNHLLDRWPRTATIIQRQLMVSSLIVVTLLGGYVL 157 
                  5666665555554333333323333355555555555555666666666666666666666666655555555677888888888999986543222333333333334446778*********************995444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1534.98
//
Query:       MMETSP1061-20121228|6014_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1256.17
//
Query:       MMETSP1061-20121228|6013_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-25   86.9   0.0    5.9e-22   76.1   0.0    2.1  2  TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
    9.1e-12   42.7   0.0    1.7e-11   41.9   0.0    1.4  1  TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
     0.0089   13.3   0.0      0.016   12.4   0.0    1.3  1  TIGR03220 catechol_dmpE: 2-oxopent-4-enoate hydratase


Domain annotation for each model (and alignments):
>> TIGR02303  HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00018      0.25      43      74 ..      95     127 ..      86     135 .. 0.83
   2 !   76.1   0.0   4.3e-25   5.9e-22      86     236 ..     162     325 ..     153     332 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00018
   TIGR02303  43 gkifalglnyadhasela.leppeeplvflkga 74 
                 ++++++g ny +h  e++   ++++p+ f k++
  MMETSP1061-20121228|6013_1  95 RRVYCVGKNYVEHVIEMGgDVKRNKPVFFTKPS 127
                 589**************95455679**999986 PP

  == domain 2    score: 76.1 bits;  conditional E-value: 4.3e-25
   TIGR02303  86 rpkdvefvhyevelvvvvGktaknvkreda.....ldyvaGytiandyairdyleny..yr.pnlrvknrdtllpiGpwi...v.dkedvedp.qnlalrtyvnGeltqeGntsdmifdvaelieylselmtlepgdliltGtpkGladvkpGdvvrleiegvG 236
                 +p + + +hyevelvv +Gk+      e+a     +d v Gy++  d++ rd   +    r p    k  d  +piGp     v +     d  +  ++   vnG ++q  + + mi++v+e+i  ls+   l+pgdli+tGtp G+  v +Gd +  +i+g+ 
  MMETSP1061-20121228|6013_1 162 YPPNTNDLHYEVELVVAIGKELDAASSEKAylldlMDCVYGYAVGIDLTRRDLQAEAksKRwPWDTGKYFDQSAPIGPITprtVgEARSFGDElHPKTMVLTVNGTIRQSAKLETMIWKVPEIISELSKSFRLKPGDLIMTGTPSGVGPVVAGDRLVGTIDGLV 325
                 7888999**************9888887664444489***************875431134266678999*******97521131333444431223455569*****************************************************99999975 PP

>> TIGR02305  HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   1.2e-14   1.7e-11      46     200 ..     156     326 ..     151     331 .. 0.83

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 1.2e-14
   TIGR02305  46 agapialpkgveklrlgaalalvvgrdasrvkeeeA.....ldyvaGyvlvndvs.....lPedsyYRPaikakcrdgfcvlgqvvels..ei....edpdeltikvtvngklkqslstsnlkrsieqLleevsefmtlkaGDvlllGtaeervkvkegdrvrveieelge 200
                 + +pi +p + ++l+ + +l + +g++    + e+A     +d v Gy++  d++        +s   P   +k  d+++++g + +++  e+    ++++  t+ +tvng ++qs+++  ++ +++++++e+s+   lk+GD++++Gt++    v +gdr+   i++l+e
  MMETSP1061-20121228|6013_1 156 SPTPIEYPPNTNDLHYEVELVVAIGKELDAASSEKAylldlMDCVYGYAVGIDLTrrdlqAEAKSKRWPWDTGKYFDQSAPIGPITPRTvgEArsfgDELHPKTMVLTVNGTIRQSAKLETMIWKVPEIISELSKSFRLKPGDLIMTGTPSGVGPVVAGDRLVGTIDGLVE 326
                 5689**********************999988888876666899****98766652221155678888*9*************66544311221112457888999********************************************************999999876 PP

>> TIGR03220  catechol_dmpE: 2-oxopent-4-enoate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   1.2e-05     0.016     188     248 ..     261     324 ..     255     328 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.2e-05
   TIGR03220 188 vatgaGaaalgspvnavawla.ntlgrlg..iplkaGevilsGslaalvpvkaGdelrvsigGi 248
                 v t  G+  ++   ++++w   + +++l     lk G++i++G+ + + pv aGd+l  +i G+
  MMETSP1061-20121228|6013_1 261 VLTVNGTIRQSAKLETMIWKVpEIISELSksFRLKPGDLIMTGTPSGVGPVVAGDRLVGTIDGL 324
                 56667777777788888885425566664226799*************************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 1373.51
//
Query:       MMETSP1061-20121228|6015_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 846.93
//
Query:       MMETSP1061-20121228|6019_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1767.51
//
Query:       MMETSP1061-20121228|6021_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-49  166.2   0.1    1.2e-17   61.7   0.0    3.0  3  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    1.9e-47  159.5   0.1    1.8e-30  103.3   0.0    2.4  2  TIGR02712 urea_carbox: urea carboxylase
    5.7e-43  144.4   0.1    1.5e-25   86.8   0.0    2.8  2  TIGR01235 pyruv_carbox: pyruvate carboxylase
    0.00015   17.3   0.0    0.00032   16.2   0.0    1.5  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit


Domain annotation for each model (and alignments):
>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   2.8e-20   2.9e-17     148     218 ..      10      80 ..       5      89 .. 0.93
   2 !   61.7   0.0   1.2e-20   1.2e-17     223     281 ..     111     169 ..     102     173 .. 0.92
   3 !   40.6   0.0     3e-14   3.1e-11     281     322 ..     188     230 ..     182     254 .. 0.89

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 2.8e-20
   TIGR00514 148 akeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladky 218
                 a+ + ypv++ka+aGGGG+G+r+  ++ el++    ak+e    f +d + le+++e+p h+e+qv++ k 
  MMETSP1061-20121228|6021_1  10 ANGLRYPVLLKAAAGGGGKGMRICYNDRELAEGYPLAKSEGLKFFADDRLLLEQYLEDPHHIEFQVVCSKK 80 
                 67889*************************************************************98775 PP

  == domain 2    score: 61.7 bits;  conditional E-value: 1.2e-20
   TIGR00514 223 ylgerdcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldke 281
                  + er+cs+qrr+qk++ee+ps  lt++ r+++ e+++ +++s+gy gaGtve+l+ ++
  MMETSP1061-20121228|6021_1 111 IFVERECSVQRRNQKVVEESPSCLLTEDTRRRMMEQTALLCQSVGYEGAGTVEWLVTNS 169
                 578****************************************************9866 PP

  == domain 3    score: 40.6 bits;  conditional E-value: 3e-14
   TIGR00514 281 egefyflemntriqvehpvtemvt.gvdlikeqirvakGekls 322
                 e++fyflemntr+qvehp+te v    dl+ + +rv +G+ l+
  MMETSP1061-20121228|6021_1 188 EQSFYFLEMNTRLQVEHPITEAVAnNADLVAAMLRVGSGKGLP 230
                 678******************997368************9876 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   1.9e-18     2e-15     144     216 ..       8      80 ..       3      88 .. 0.93
   2 !  103.3   0.0   1.7e-33   1.8e-30     219     322 ..     109     231 ..     103     247 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 1.9e-18
   TIGR02712 144 eaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgk 216
                 + a+ + yPv+lk++aGGGG G++ + + +el+e +   k  g +ff+d+++ le+++e+ +h+e q++   k
  MMETSP1061-20121228|6021_1   8 AGANGLRYPVLLKAAAGGGGKGMRICYNDRELAEGYPLAKSEGLKFFADDRLLLEQYLEDPHHIEFQVVCSKK 80 
                 568899**************************************************************97655 PP

  == domain 2    score: 103.3 bits;  conditional E-value: 1.7e-33
   TIGR02712 219 vvalgerdCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiy.............de.....krdefyflevntrlqvehpvteavt.gldlvewmvrlaageapdl 322
                 v ++ er+Cs+qrrnqkvvee+P+  l+e++r+++++ +  l+++v y++aGtve++              d+     ++++fyfle+ntrlqvehp+teav  + dlv  m+r+++g+  + 
  MMETSP1061-20121228|6021_1 109 VAIFVERECSVQRRNQKVVEESPSCLLTEDTRRRMMEQTALLCQSVGYEGAGTVEWLVtnsgsdngkdngkDKdngnhSEQSFYFLEMNTRLQVEHPITEAVAnNADLVAAMLRVGSGKGLPP 231
                 77899***************************************************96444443333222211112113467********************7368*********99876544 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   1.5e-18   1.5e-15     151     218 ..      13      80 ..       6      86 .. 0.93
   2 !   86.8   0.0   1.4e-28   1.5e-25     221     324 ..     109     232 ..     101     244 .. 0.81

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 1.5e-18
   TIGR01235 151 iGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdka 218
                   yPv+lkaa GGGG+Gmr+  ++ e+a+ +  akse    f +d + +e+++e p+hie q+++ k+
  MMETSP1061-20121228|6021_1  13 LRYPVLLKAAAGGGGKGMRICYNDRELAEGYPLAKSEGLKFFADDRLLLEQYLEDPHHIEFQVVCSKK 80 
                 469************************************************************99876 PP

  == domain 2    score: 86.8 bits;  conditional E-value: 1.4e-28
   TIGR01235 221 vvhlferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvde.........dtk...........fyfievnpriqvehtvteeit.GidivkaqikvaeGaslpsk 324
                 v  + er+csvqrr+qkvve +P+  l+++ r +++e++  l ++v+y++aGtve+lv +           k           fyf+e+n+r+qveh +te ++   d+v+a ++v +G+ lp +
  MMETSP1061-20121228|6021_1 109 VAIFVERECSVQRRNQKVVEESPSCLLTEDTRRRMMEQTALLCQSVGYEGAGTVEWLVTNsgsdngkdnG-KdkdngnhseqsFYFLEMNTRLQVEHPITEAVAnNADLVAAMLRVGSGKGLPPD 232
                 55567****************************************************9652222222220.0223333344449*****************997368*************99854 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   3.1e-07   0.00032     700     766 ..      10      80 ..       4      85 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 3.1e-07
   TIGR01369 700 akeigyPvlvRpsyvlgGrameiveneeeleryle....eavevskekPvlidkyledavEvdvDavadge 766
                 a+ + yPvl++++   gG++m+i++n+ el++       e ++   +  +l+++yled   ++  +v++++
  MMETSP1061-20121228|6021_1  10 ANGLRYPVLLKAAAGGGGKGMRICYNDRELAEGYPlaksEGLKFFADDRLLLEQYLEDPHHIEFQVVCSKK 80 
                 67788999999999999999999999999988654222245566777889999999999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 927.49
//
Query:       MMETSP1061-20121228|6022_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1579.87
//
Query:       MMETSP1061-20121228|6023_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 496.53
//
Query:       MMETSP1061-20121228|6025_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 553.10
//
Query:       MMETSP1061-20121228|6026_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|6024_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1766.62
//
Query:       MMETSP1061-20121228|6029_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 472.38
//
Query:       MMETSP1061-20121228|6027_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 700.12
//
Query:       MMETSP1061-20121228|6030_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|6031_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 701.94
//
Query:       MMETSP1061-20121228|6032_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 607.15
//
Query:       MMETSP1061-20121228|6036_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 3106.46
//
Query:       MMETSP1061-20121228|6033_1  [L=828]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.39
# Mc/sec: 2802.23
//
Query:       MMETSP1061-20121228|6044_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|6043_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00059   16.6   0.0    0.00082   16.1   0.0    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0015   15.2   0.0     0.0022   14.7   0.0    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0     4e-07   0.00082       1      36 [.     164     205 ..     164     234 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4e-07
   TIGR01988   1 divIvGgGlvGlalAlaLassa.......dlkvalveakaaek 36 
                 +++I+G+G+vGl+lA aL+  +       ++++++ve++a  +
  MMETSP1061-20121228|6043_1 164 HVLIIGAGPVGLSLANALSMLSqrhpnlpKIRILIVETRAD-A 205
                 699***************97767889999999999998743.3 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.1e-06    0.0022       2      33 ..     165     203 ..     164     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.1e-06
   TIGR01984   2 viivGgglvGlslAlaLsrks.......klkialieaks 33 
                 v+i+G+g+vGlslA+aLs  s       k++i ++e+++
  MMETSP1061-20121228|6043_1 165 VLIIGAGPVGLSLANALSMLSqrhpnlpKIRILIVETRA 203
                 89******************999999999******9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 2537.12
//
Query:       MMETSP1061-20121228|6040_1  [L=1422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.8e-232  770.8   4.7    1.3e-97  325.6   0.1    4.1  4  TIGR00958 3a01208: antigen peptide transporter 2
   5.4e-209  693.4   6.4      7e-99  329.8   0.0    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
   9.6e-190  629.6   1.7    1.5e-87  292.2   0.1    4.1  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   8.1e-164  544.4   8.9    6.2e-83  277.1   0.1    4.1  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
   1.4e-148  494.2   8.4    2.1e-72  242.4   0.1    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
     5e-147  488.9   0.3    1.9e-70  235.7   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   2.6e-141  470.0   4.1    7.4e-71  237.2   0.1    4.1  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
   8.3e-129  428.7   0.1    1.3e-64  216.9   0.0    3.6  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
   4.3e-127  423.0   2.6    3.3e-68  228.6   0.0    2.6  3  TIGR01192 chvA: glucan exporter ATP-binding protein
   2.4e-122  407.0   4.9    1.7e-65  219.5   0.1    3.4  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
   8.4e-121  402.5   1.7    1.4e-60  203.4   0.0    4.1  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
   9.1e-107  355.7   0.0    2.1e-54  182.9   0.0    3.7  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.4e-81  271.4   0.0    6.3e-40  134.9   0.0    2.2  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      1e-76  256.2   0.8    9.4e-38  128.1   0.1    2.2  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.5e-68  228.7   0.0    2.8e-35  119.8   0.0    2.2  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.4e-68  228.0   0.3    1.3e-35  120.1   0.0    2.7  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.4e-66  222.6   0.2    7.4e-35  118.4   0.0    2.3  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.3e-66  221.4   0.0    1.4e-32  110.9   0.0    2.3  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    5.2e-66  220.2   0.0    1.8e-34  117.1   0.0    2.2  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.1e-64  215.6   0.0    5.2e-34  115.4   0.0    2.4  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.3e-64  216.5   0.1    6.6e-32  108.9   0.0    2.2  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.2e-64  215.0   0.0    9.3e-32  108.2   0.0    2.4  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    7.7e-61  203.7   0.0    2.1e-30  103.9   0.0    2.3  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    8.7e-61  203.1   0.0    7.7e-32  108.5   0.0    2.5  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.6e-59  197.9   0.1    1.3e-28   97.8   0.0    2.3  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    4.3e-59  198.2   0.0    1.4e-30  104.3   0.0    2.1  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.5e-58  195.0   0.0    2.7e-29  100.2   0.0    2.5  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.4e-58  195.1   3.0    1.2e-29  101.4   0.1    2.3  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.8e-57  192.3   0.1    1.5e-28   97.5   0.0    3.0  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.7e-57  192.4   0.1    1.3e-28   98.1   0.0    2.2  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    9.1e-57  189.9   0.0    1.3e-28   97.9   0.0    2.3  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    4.2e-56  188.2   0.0    1.3e-27   94.6   0.0    2.2  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.5e-55  185.4   0.1    6.3e-28   95.8   0.0    2.7  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    8.2e-53  176.5   0.0    7.3e-26   88.6   0.0    2.5  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.1e-51  172.5   0.0    2.3e-26   90.4   0.0    2.4  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.1e-50  169.3   0.1    1.4e-25   88.0   0.0    2.3  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    3.3e-50  168.5   0.0    7.9e-27   91.0   0.0    2.1  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    6.6e-45  151.1   0.0    1.3e-21   74.9   0.0    2.5  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    3.3e-43  146.0   0.0    4.8e-22   76.1   0.1    2.2  2  TIGR00955 3a01204: pigment precursor permease
    2.1e-42  142.9   0.0    1.5e-20   71.5   0.0    2.5  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    4.9e-41  138.8   0.2    1.8e-19   68.2   0.0    2.7  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.2e-39  134.4   0.6    4.5e-20   70.1   0.1    2.3  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    8.6e-39  131.3   0.4    6.3e-19   66.4   0.1    2.6  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.9e-38  130.0   0.0    1.7e-19   68.0   0.0    2.6  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.8e-38  129.5   0.0    3.6e-20   70.0   0.0    2.2  2  TIGR01288 nodI: nodulation ABC transporter NodI
    1.7e-37  127.0   4.1    2.3e-19   67.6   0.4    3.2  2  TIGR01978 sufC: FeS assembly ATPase SufC
    3.7e-37  126.0   0.0    5.6e-19   66.2   0.0    2.3  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    9.6e-37  124.5   2.7    4.7e-20   69.4   0.2    2.8  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.1e-36  124.2   0.2      3e-20   70.0   0.0    2.1  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    6.1e-35  118.8   0.8    1.4e-16   58.7   0.0    3.2  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.2e-33  114.3   0.7    9.8e-10   35.4   0.0    4.4  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    5.1e-31  105.7   0.2    1.6e-16   57.8   0.0    2.7  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.5e-28   97.8   0.0    2.6e-13   47.8   0.0    2.8  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    3.4e-28   96.3   0.0      5e-16   56.1   0.0    2.9  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    4.8e-27   91.8   0.1    2.5e-13   46.4   0.0    2.2  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.4e-24   83.0   0.1    5.7e-12   41.1   0.0    2.1  2  TIGR01257 rim_protein: rim ABC transporter
    2.4e-15   53.7   6.7    1.6e-07   27.8   0.0    3.6  4  TIGR00630 uvra: excinuclease ABC subunit A


Domain annotation for each model (and alignments):
>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.1   4.2e-23     3e-21     211     412 ..      41     242 ..      24     248 .. 0.91
   2 !  325.6   0.1   1.8e-99   1.3e-97     467     711 .]     374     622 ..     369     622 .. 0.97
   3 !  296.7   0.0     1e-90   7.4e-89     478     711 .]     667     906 ..     655     906 .. 0.96
   4 !   74.1   0.1   2.1e-23   1.5e-21     217     465 ..    1057    1307 ..    1022    1319 .. 0.87

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 4.2e-23
   TIGR00958 211 slaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLa.yGgqlvle 412
                  +   ++ +l+  +fe++  +    ++ + f++llrQd++Ffd + +G +   ++  ++   + +  +    ++  + ++g+++f l   +rL+l+ l + P+v + +  + ++ q+ s +  +a +ka+ +a   +sg++TV S  a  + +s+++++ e+ +++++k  l +  +++ + l   li+ ++L+ yG++ + +
  MMETSP1061-20121228|6040_1  41 GVYALVISTLQTACFEVVAYKAAHSLKLQWFQALLRQDVAFFDVHDVGGIATSITPAANRYRRGVGRKFGEGIQFFTTGVGGIVFSLYSEWRLALLVLSFCPVVAFFATGLVTINQSKSARSGKAYSKAGSIAYSTVSGIKTVLSLNAISRMVSKYNSATEDAFKIATKP-LIRQGFTAGMMLGSFLIMYIILTlYGSYVIYK 242
                 56677889999***********************************************************************************************************************************************************9765.66677888888888888878886267776655 PP

  == domain 2    score: 325.6 bits;  conditional E-value: 1.8e-99
   TIGR00958 467 sgtlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykqlv 711
                 s  l+p+ +eG+++F+dV F YP+rp + +l++L++ + +G++va VGPsG+GKStv+ lle++Y+P +G v lDg ++ke++ k+l++ ++ VgqEP lf+ ++ +Ni+YG  ++ + e+  aak anahdFis+l++gy+t+vg+kGsqlsgGqkqriAiAR Lv kP +L+LDeAtSALD+++e ++qe      s+++rt ++iahrLst+++ad i+v+  g++ve+Gth++Lm +e+ yk+lv
  MMETSP1061-20121228|6040_1 374 STGLQPTDVEGQLTFEDVRFNYPTRPGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEalenIISTQQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMSETYYKKLV 622
                 56689***********************************************************************************************************************************************************************************8887777755447899**********************************************997 PP

  == domain 3    score: 296.7 bits;  conditional E-value: 1e-90
   TIGR00958 478 kveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtev.gekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykqlv 711
                  + F+ VsFsYP+rp++ +l    +++  Ge++ l G sG+GKStv+ l+e++Y+P++G+v   g+++k+++ k+++ +++ VgqEP lf  ++ eNia+G  +++++++ +aak+ana dFi+++++ +dt + g  G+qlsgGqkqriAiARALv+kP +L+LDeAtSALD e+e+++qe     +++k++t ++iahrLst+++ad+i+++  g+v+e G h++Lmek++  yk+lv
  MMETSP1061-20121228|6040_1 667 LIVFRSVSFSYPTRPNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPSATRKQIESAAKQANAYDFIMDFPDKFDTVIaGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEaldkLMESKDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEKPNgKYKRLV 906
                 799**********************************************************************************************************************************9789*************************************99999998777789*******************************************988999987 PP

  == domain 4    score: 74.1 bits;  conditional E-value: 2.1e-23
   TIGR00958  217 laglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvy...qklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysell...kavGasekvFeyldRkPqle 465 
                  l +     f +a++r+n+r+r d f+sl+rQ++ Ffd+  +G +tS l +D++ +     + +  +l +   +l +l++ +   ++ ++v l  +P++ +a++   k+    ++ +ee+qe  +  + ++ E l  + TV   + Ee+  + +++++++  + +  + + + ++   + ++++ i  l ++yGg l+ +   ++  L  Fl+ ++ +   ++ L+  ++++    ++  +++++F +ldR+  ++
  MMETSP1061-20121228|6040_1 1057 LMF---WGFGNASERMNRRVRDDAFRSLVRQEVSFFDKRSVGMITSELQEDATRIQTFTGDPIRSILTAGSSVLIGLTLSFFYMWEFAIVALACVPVMGVATSLEMKQLfgeDEGAEETQEEASSPGGIIVETLLNMGTVSALTMEEERYKNYQDAMTNDNENYVWAGVREGVLAGLSMFIQQWINALEIYYGGWLLYRF-PEKYVLNDFLISNFAIIFSLFGLGAAFQDIAdrkQTEKSASRIFYLLDRTSAID 1307
                  222...23889*****************************************************************************************9987666533448999******************************************9999999999999999999******************99875.5888999*********************996332677899*********98776 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.6   2.1e-12   1.5e-10      56     253 ..      29     225 ..      18     306 .. 0.82
   2 !  329.8   0.0  9.8e-101     7e-99     320     575 ..     368     625 ..     356     626 .. 0.96
   3 !  290.5   0.0     8e-89   5.8e-87     311     575 ..     640     909 ..     635     910 .. 0.95
   4 !   35.0   0.0   1.9e-11   1.4e-09      62     227 ..    1043    1210 ..    1027    1234 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 2.1e-12
   TIGR02204  56 llneafalllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvf 253
                  ++e+   ll + +   + ++l+      +  +    l+ + f+ ll+ + affd    g + + +t  ++  +  vG  +   ++   + +G+++  ++ + +l++lvl   P+v +    +    +++s +s    ++a++ a  +++ iktv + +  ++  s++++a+e+a+++a+k +  +  ++a +++ +f
  MMETSP1061-20121228|6040_1  29 PIKEIAFWLLGIGVYALVISTLQTACFEVVAYKAAHSLKLQWFQALLRQDVAFFDVHDVGGIATSITPAANRYRRGVGRKFGEGIQFFTTGVGGIVFSLYSEWRLALLVLSFCPVVAFFATGLVTINQSKSARSGKAYSKAGSIAYSTVSGIKTVLSLNAISRMVSKYNSATEDAFKIATKPLIRQG-FTAGMMLGSF 225
                 5556656666666666666667777777888899999********************************************************************************99999999999999999*********************************************98765443.3333333222 PP

  == domain 2    score: 329.8 bits;  conditional E-value: 9.8e-101
   TIGR02204 320 dikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelm..kgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlarLq 575
                 +i++ ++    p++v+g+++fe+v+f+yP+rp ++ l+gl++ + +G+tva+vGPsG Gkst+++ll rfydP +G+++ldG+d++el+ ++lr+ +  v q++alfa+ + +ni yG p+ s+ e+ +aak a+a++fis+lp+Gy+t++G++g +LsGGqkqriaiar ++ + +iLLLdeatsaLd++se  vq+ale+++  ++rtt++iahrL+t+++ad i+v+  G ive+Gth++L+ + + y++l+  q
  MMETSP1061-20121228|6040_1 368 EIDSMSSTGLQPTDVEGQLTFEDVRFNYPTRPGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIIstQQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMSETYYKKLVDTQ 625
                 566666777789*********************************************************************************************************************************************************************************************9863368**********************************************9866 PP

  == domain 3    score: 290.5 bits;  conditional E-value: 8e-89
   TIGR02204 311 liellkaksdikaPaqpkalpa.kvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtll.GergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmk..grttlviahrLatvlkadrivvldkGriveqGthaeLiak.ggLyarlarLq 575
                 l +l+k++s+i   + p+ l++ ++   i f +v+f+yP+rp+++ ld+++l++ +Get+ l G sG Gkst++ l+ rfydP++G++   G d+++l+ +  r+++  v q+++lf a + eni++G p a+++++e+aak+a+a +fi ++p+ +dt + G  g +LsGGqkqriaiara++k+  iLLLdeatsaLd ese+ vq+al++lm+  ++t +viahrL+t+++adri+ + +Gr+ e+G+h+eL++k +g y+rl++ q
  MMETSP1061-20121228|6040_1 640 LGQLAKTESQIGFEKVPERLAKeDAMPLIVFRSVSFSYPTRPNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPSATRKQIESAAKQANAYDFIMDFPDKFDTVIaGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMEskDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEKpNGKYKRLVESQ 909
                 567899999999999999998725678899*********************************************************************************************************************************876899**************************************************722679***********************************87589*****9876 PP

  == domain 4    score: 35.0 bits;  conditional E-value: 1.9e-11
   TIGR02204   62 alllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrv...rklsresqdrladasayagealeaiktvqayaseeaersrfdaav 227 
                    + ++v+v  ++ +l f+      er+   +r + f  l++ + +ffdk + g + s l  d+t +++  G  +   l     ++ +l++ +     ++ + l+ vP++ +   l  +++    + + e+q++ +  ++ + e+l ++ tv a + ee+  ++++ a+
  MMETSP1061-20121228|6040_1 1043 HWV-ILVVVCVTGNMLMFWGFGNASERMNRRVRDDAFRSLVRQEVSFFDKRSVGMITSELQEDATRIQTFTGDPIRSILTAGSSVLIGLTLSFFYMWEFAIVALACVPVMGVATSLEMKQLfgeDEGAEETQEEASSPGGIIVETLLNMGTVSALTMEEERYKNYQDAM 1210
                  333.4455556799999********************************************************9988888888888889999999999***********9888888888873434678999****************************9999998765 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.6e-09   1.1e-07      59     233 ..      35     209 ..      11     234 .. 0.90
   2 !  292.2   0.1   2.1e-89   1.5e-87     324     569 ..     378     625 ..     366     628 .. 0.96
   3 !  272.7   0.0   1.8e-83   1.3e-81     324     569 ..     660     909 ..     650     912 .. 0.95
   4 !   32.4   0.0     1e-10   7.4e-09      50     220 ..    1033    1206 ..     958    1306 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.6e-09
   TIGR02203  59 llvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalk 233
                   ++g+ v   + s + + ++  v+ k +++l+ + f+ ll+   a+fd +++g + + +t  +++  + +   +   ++   t +g +++ ly +W+l+l+v+   Pv+a+ +  +    ++ s  + ++ +++ +++  +++g + v + ++      +++ +++   + a k
  MMETSP1061-20121228|6040_1  35 FWLLGIGVYALVISTLQTACFEVVAYKAAHSLKLQWFQALLRQDVAFFDVHDVGGIATSITPAANRYRRGVGRKFGEGIQFFTTGVGGIVFSLYSEWRLALLVLSFCPVVAFFATGLVTINQSKSARSGKAYSKAGSIAYSTVSGIKTVLSLNAISRMVSKYNSATEDAFKIATK 209
                 556666677777778889999************************************************************99*********************************9999999999************************************9999888777766 PP

  == domain 2    score: 292.2 bits;  conditional E-value: 2.1e-89
   TIGR02203 324 alervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm..kgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLhkiq 569
                 ++  v+G++ f++v f+yp + +  +l+++s+++ aG++va+vG+sG Gkst+v+ll RFy+p +G + lDg+d+++l++++LR+ + +v+q+  LF  tia+n++Yg+  + ++ e+ +a++ a+++d++ +lp+G +t+vG++gs+LsGGq+qR+aiaR l+    iL+LDeatsaLD+ se  vq+aLe+++  ++Rtt++iahRLsti++aD i v+  G ive+Gth +L+  + +Y +L + q
  MMETSP1061-20121228|6040_1 378 QPTDVEGQLTFEDVRFNYPTRpGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGAP-NCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIIstQQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMSETYYKKLVDTQ 625
                 5678***************98467889***********************************************************************************.9999******************************************************************************964489********************************************997665 PP

  == domain 3    score: 272.7 bits;  conditional E-value: 1.8e-83
   TIGR02203 324 alervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtev.GengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk..gRttlviahRLstiekaDrivvlddGkiverGtheeLlar.nGlYasLhkiq 569
                 a+e +   + fr+v+f yp + +r +ld+++lk+ +Ge++ l G sG Gkst++ l+ RFy+p++G++   g+d+++l+++  R q+ +v+q+ +LFd ti en+a+g+  +++++++e+a+++a++ d++ + p+ +dt + G  g++LsGGq+qR+aiaRal+k   iL+LDeatsaLDneseR vq+aL++lm+  + t +viahRLsti++aDri  + dG++ e G+h eL+++ nG Y +L + q
  MMETSP1061-20121228|6040_1 660 AKEDAMPLIVFRSVSFSYPTRpNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAP-SATRKQIESAAKQANAYDFIMDFPDKFDTVIaGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMEskDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEKpNGKYKRLVESQ 909
                 6677888899*********9846889************************************************************************************.8999*************************997899**************************************************72267************************************9769****998766 PP

  == domain 4    score: 32.4 bits;  conditional E-value: 1e-10
   TIGR02203   50 keevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrki...skeiqnsigeltkvveealqgyrvvklfggqeaeakRf 220 
                   ++  +++ +  v+lvv+   ++ +  + ++ +s+++ r +R + f  l++   ++fdk+s+g + s+l  d++++ + + d +  ++  + +v+  l + +++ W+++++ ++ +Pv++++++   k+l       +e+q+  +    ++ e+l +   v     +e   k +
  MMETSP1061-20121228|6040_1 1033 LRDDSFTLSIHWVILVVVCVTGNMLMFWGFGNASERMNRRVRDDAFRSLVRQEVSFFDKRSVGMITSELQEDATRIQTFTGDPIRSILTAGSSVLIGLTLSFFYMWEFAIVALACVPVMGVATSLEMKQLFGEdegAEETQEEASSPGGIIVETLLNMGTVSALTMEEERYKNY 1206
                  44555666777778888877788888889999**************************************************99999888888877777778888*****************9998888754401144555555555556666666666665555444444444 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.8    0.0022      0.16     173     346 ..      25     199 ..      22     247 .. 0.81
   2 !  277.1   0.1   8.6e-85   6.2e-83     447     692 ..     377     625 ..     359     627 .. 0.95
   3 !  242.7   0.0   2.1e-74   1.5e-72     455     693 ..     667     910 ..     648     911 .. 0.94
   4 !   18.7   0.1   1.3e-06   9.3e-05     181     380 ..    1040    1243 ..    1025    1251 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0022
   TIGR01846 173 rglstlsvlalallavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvreleqirefltgsaltvvldllfvvvflavmffysp.kltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerq 346
                 +gl  ++ +a+ ll + v+ +++s+l+t  f  ++ +    l  + ++ ll   +++f+ + vG + + +   ++      g  +   +  + + v   v   ys  +l l+vl   ++ + + + +  i + + +   +  ++a s+   +v+gi+t+ +    +++  +++  
  MMETSP1061-20121228|6040_1  25 NGLGPIKEIAFWLLGIGVYALVISTLQTACFEVVAYKAAHSLKLQWFQALLRQDVAFFDVHDVGGIATSITPAANRYRRGVGRKFGEGIQFFTTGVGGIVFSLYSEwRLALLVLSFCPVVAFFATGLVTINQSKSARSGKAYSKAGSIAYSTVSGIKTVLSLNAISRMVSKYNSA 199
                 67778888999**********************************************************99888766666788888888776666666666678873566667666777777778888888888888888889999999999******99988888888777654 PP

  == domain 2    score: 277.1 bits;  conditional E-value: 8.6e-85
   TIGR01846 447 aalpelkGaiefenirfryked.spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei..ckgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqqq 692
                 +  ++++G+++fe++rf y      ++l+ ls+di+aG+++  vGpsG Gkst+ kll r+y P +G v +dg d+  ++ + lr  +g v qe  lf  +i++ni+ + P+ s+ ++++aakla ahdfis+l++Gyet+vg+kG++lsGGq+qria+ar lv++P+il+ldeatsald +se v+++ l++i  ++ rt +iiahrlst+r+ad i v+  G ive G+h++l+ +e+ y kl   q
  MMETSP1061-20121228|6040_1 377 LQPTDVEGQLTFEDVRFNYPTRpGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIisTQQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMSETYYKKLVDTQ 625
                 4556899************765156899*********************************************************************************************************************************************************************966689**********************************************9888 PP

  == domain 3    score: 242.7 bits;  conditional E-value: 2.1e-74
   TIGR01846 455 aiefenirfryked.spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetev.gekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei..ckgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyaklyqqqs 693
                  i f+ + f y    +  +l++++l+i +Ge+iG+ G sG Gkst+  l+ r+y Pe+G+v   g d+  ++ +w r q+g v qe  lf+ +i +nia + P++  +++  aak a a dfi++ ++ ++t + g  G++lsGGq+qria+aralv++P il+ldeatsald ese+++++ l+++  +k+ t ++iahrlst+r+adri  + +G++ e G+h+el++k +g+y +l + q+
  MMETSP1061-20121228|6040_1 667 LIVFRSVSFSYPTRpNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPSATRKQIESAAKQANAYDFIMDFPDKFDTVIaGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLmeSKDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEKpNGKYKRLVESQA 910
                 689********754166899****************************************************************************************************************984579************************************************9445788*************************************999******99885 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 1.3e-06
   TIGR01846  181 lalallavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvreleqirefltgsaltvvldllf.vvvflavmffyspkltlvvlvslviylllsvivspil.r..krvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayv.aasfkvtklgnlasqaieliqkltaalll 380 
                  l++  ++++v+ v+  +l  + f+++++r++  +    +r l+   +s+f++r vG + + ++e ++  + +tg  + ++l     v++ l+  ffy  ++ +v l ++++  +  +    +l    +  e+  e+ ++   ++ve++  + t+ a ++e++  ++++  +++   +  +   + g la+ +  +iq+   al +
  MMETSP1061-20121228|6040_1 1040 LSIHWVILVVVCVTGNMLMFWGFGNASERMNRRVRDDAFRSLVRQEVSFFDKRSVGMITSELQEDATRIQTFTGDPIRSILTAGSsVLIGLTLSFFYMWEFAIVALACVPVMGVATSLEMKQLfGedEGAEETQEEASSPGGIIVETLLNMGTVSALTMEEERYKNYQDAMTNDNeNYVWAGVREGVLAGLS-MFIQQWINALEI 1243
                  455667777788888889999******************************************9888778889999999998765156779999***9999988888887765544444444413112345556666666789*************999988777777766543202233333344444433.234444444444 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.5    0.0025      0.18     175     340 ..      30     196 ..       2     247 .. 0.80
   2 !  242.4   0.1     3e-74   2.1e-72     438     685 ..     372     625 ..     358     626 .. 0.94
   3 !  235.3   0.0   4.3e-72   3.1e-70     452     685 ..     668     909 ..     653     910 .. 0.94
   4 !   10.5   0.1   0.00045     0.033     206     351 ..    1068    1217 ..    1040    1278 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0025
   TIGR03797 175 llqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasram.gvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaaw 340
                 + ++a+ ll + + al+++  q      ++ ++  sl+   ++ LLr  ++fF  + +g +a+ ++ + ++ rr ++ +  + +   + ++  +v  l+ +++lal+ + ++ v++   + l +++ +k+++  +  +k  ++++  ++gi+ +    a +r+  ++
  MMETSP1061-20121228|6040_1  30 IKEIAFWLLGIGVYALVISTLQTACFEVVAYKAAHSLKLQWFQALLRQDVAFFDVHDVGGIATSITpAANRYRRGVGRKFGEGIQFFTTGVGGIVFSLYSEWRLALLVLSFCPVVAFFATGLVTINQSKSARSGKAYSKAGSIAYSTVSGIKTVLSLNAISRMVSKY 196
                 567888888888888888888888877788888888999999*******************99875388999********999999999*********************999999888888888888888888888899999999999998765555555555444 PP

  == domain 2    score: 242.4 bits;  conditional E-value: 3e-74
   TIGR03797 438 vdeekvdpgkLsGaievdrvtFrYe.kdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl....kvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelarRQ 685
                 ++++  +p +++G+++ + v F+Y  + g+++L+ +s+ i +G+ va+vG+SG GKSt+++lL  F  P +G v  DG d+++l+v+ +R  +G V Q+  l++ +i +ni  ga+  ++ e  +aa++a   + i+++P g  T + + g++lSGGQ+QR+ iAr lv kP+ill+DEATSALD ++  +V e+le++    + t ++iAHRLSTirnad i v+  G +ve+G++++L+ +e  +++l+  Q
  MMETSP1061-20121228|6040_1 372 MSSTGLQPTDVEGQLTFEDVRFNYPtRPGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGAPnCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIistqQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMSETYYKKLVDTQ 625
                 4567789*****************625799**********************************************************************************99999***************************************************************************999987633336788*******************************************9877 PP

  == domain 3    score: 235.3 bits;  conditional E-value: 4.3e-72
   TIGR03797 452 ievdrvtFrYek.dgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegg.gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl....kvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlak.eGlfaelarRQ 685
                 i  ++v+F Y +   +++Ld+  lki +Ge +++ G SG GKSt++ l+  F  Pe+G+v y G+d++kl+v+  R q+G V Q+  l+ ++i enia ga+  t ++  +aa++a   + i + P  + Tvi+ g+ ++lSGGQ+QR+ iAralv+kP+ill+DEATSALDN++ +iV e+l+kl      t +viAHRLSTirnadri  + +Grv e Gs++eL++k +G +++l++ Q
  MMETSP1061-20121228|6040_1 668 IVFRSVSFSYPTrPNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPsATRKQIESAAKQANAYDFIMDFPDKFDTVIAGGSgTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLmeskDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEKpNGKYKRLVESQ 909
                 77899*****7515789************************************************************************************98999****************************986157*********************************************944334689**********************************9648******9988 PP

  == domain 4    score: 10.5 bits;  conditional E-value: 0.00045
   TIGR03797  206 avdaslqaavwdrLLrlpasfFreysagdLasramgvsqirrllsgatlkalls.sifallnlvlllvyslklalvavllalvaiavtlvlgllqvrke....rkllelegklsgltvqlingisKlrvagaeerafaawakefseqrkle 351 
                  +++ +++   +  L+r ++sfF + s+g ++s  +  ++  ++++g  ++++l+ +   l+ l+l + y ++ a+va++ + v+ +v + l + q+  e    ++++e++++  g++v+ +  +  +   + ee+ + +++   +++++ +
  MMETSP1061-20121228|6040_1 1068 RMNRRVRDDAFRSLVRQEVSFFDKRSVGMITSELQEDATRIQTFTGDPIRSILTaGSSVLIGLTLSFFYMWEFAIVALACVPVM-GVATSLEMKQLFGEdegaEETQEEASSPGGIIVETLLNMGTVSALTMEEERYKNYQDAMTNDNENY 1217
                  556666666777899***************99987655555566666666666515666789***************9987665.555555555554331111344555555566777777666666666666666666666666665555 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   8.8e-05    0.0063     205     358 ..      42     196 ..       2     214 .. 0.79
   2 !  235.7   0.0   2.7e-72   1.9e-70     469     709 ..     378     622 ..     349     623 .. 0.93
   3 !  214.9   0.0   5.3e-66   3.8e-64     478     709 ..     668     906 ..     640     907 .. 0.93
   4 !   20.6   0.0   3.3e-07   2.3e-05     218     401 ..    1062    1249 ..    1016    1254 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.8e-05
   TIGR03796 205 llqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsgqlattvldlvlvvfyalvmllyd.lvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrw 358
                 +   v+++lq+a  + +  k a +   + ++ +lr  v ff+    g ia+ ++ +++  +   g+     +++++  +  +v  ly+ + lal+++++  + ++  +      + +++r  + ++k+ ++a+++++ i+t+    + s ++s++
  MMETSP1061-20121228|6040_1  42 VYALVISTLQTACFEVVAYKAAHSLKLQWFQALLRQDVAFFDVHDVGGIATSITPAANRYRRGVGRKFGEGIQFFTTGVGGIVFSLYSeWRLALLVLSFCPVVAFFATGLVTINQSKSARSGKAYSKAGSIAYSTVSGIKTVLSLNAISRMVSKY 196
                 44678999********************************************9988777777777777788999999999999999972569****99998888776666666666666777777777777777777777765555555555555 PP

  == domain 2    score: 235.7 bits;  conditional E-value: 2.7e-72
   TIGR03796 469 eekekLsGkvelrnvtfgysa.leapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr....RgctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarLi 709
                 ++ + ++G++++++v+f y +   + +++++s+++  G+ vA+vG+sG Gkst+ kl+  +y+p +G +++Dg++ +e++ + l++ + +v q+  lf++t+  n++   +  +++++v+Aak A  hd i ++p+gye+++ + g+ lsGGq+qR+ iAR Lv +P iL+lDEatsaLD++ E  ++e+l +       t++i+aHRLstiR++d i v+  G++ve+GtH++l+ +e  Y++L+
  MMETSP1061-20121228|6040_1 378 QP-TDVEGQLTFEDVRFNYPTrPGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENiistQQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMSETYYKKLV 622
                 33.789*************651578899**************************************************************************************************************************************************************9988754222278899******************************************98 PP

  == domain 3    score: 214.9 bits;  conditional E-value: 5.3e-66
   TIGR03796 478 velrnvtfgysal.eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaeg.ganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr....RgctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaYarLi 709
                 + +r v+f+y +  ++ ++++f+l++ +G+ + l G sG Gkst+  l+  +y+p +G++ + g++ ++++ +  +  + +v q+ +lf++t+ +n+++  ++ +++++++Aak A   d i+  p+++++ +a g g+ lsGGq+qR+ iARaLvk+P iL+lDEatsaLD e E++++e+l +    +  tc+++aHRLstiR++d+i  +  G+v e G+H+el++  +g+Y+rL+
  MMETSP1061-20121228|6040_1 668 IVFRSVSFSYPTRpNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPSATRKQIESAAKQANAYDFIMDFPDKFDTVIAGGsGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKlmesKDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEkPNGKYKRLV 906
                 67899*****7551777889*****************************************************************************************************************976489***************************************9998754333389*************************************9568******8 PP

  == domain 4    score: 20.6 bits;  conditional E-value: 3.3e-07
   TIGR03796  218 lrrleiklavassarflwhilrlPveffaqRaageiasRvql.ndkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkr..v.danrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglr 401 
                    + + ++  ++  + ++ ++r  v+ff++R+ g i+s +q  + ++ ++ ++ + + +++   v++ + + + y + +a++a+a+  +  +a +l +++   + + +++ q++a+   g+ +++l ++ t+ A ++e++ +++++ ++++  ++    gv++ +l  l  ++++  +al +  gg++
  MMETSP1061-20121228|6040_1 1062 FGNASERMNRRVRDDAFRSLVRQEVSFFDKRSVGMITSELQEdATRIQTFTGDPIRSILTAGSSVLIGLTLSFFYMWEFAIVALACVPVMGVATSLEMKQLfgEdEGAEETQEEASSPGGIIVETLLNMGTVSALTMEEERYKNYQDAMTNDNENYVWAGVREGVLAGLSMFIQQWINALEIYYGGWL 1249
                  55566778888888899999******************998725689999999999999999999*****************999988887777776666422414456667777778999****************************999999999999999999999999999999988888886 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0023      0.17     288     404 ..     132     248 ..     123     249 .. 0.78
   2 !  237.2   0.1     1e-72   7.4e-71     454     690 ..     374     613 ..     363     618 .. 0.96
   3 !  207.6   0.0   8.7e-64   6.3e-62     456     691 ..     658     897 ..     633     901 .. 0.92
   4 !   15.5   0.0   1.2e-05   0.00086     219     393 ..    1068    1247 ..    1046    1252 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0023
   TIGR03375 288 plvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmG 404
                  l+l++l  +p+v  ++  l +  ++ +++s ++ ++  ++ + +++g++t+  lna sr+ +k++++++   k+++k    + ++  +      ++++++ + G+y+i ++  ++G
  MMETSP1061-20121228|6040_1 132 RLALLVLSFCPVVAFFATGLVTINQSKSARSGKAYSKAGSIAYSTVSGIKTVLSLNAISRMVSKYNSATEDAFKIATKPLIRQGFTAGMMLGSFLIMYIILTLYGSYVIYKDVFATG 248
                 57777888888887777665554444445555555555678899**************************999999888777777777777777889999999******99988877 PP

  == domain 2    score: 237.2 bits;  conditional E-value: 1e-72
   TIGR03375 454 krllsreklkGeielknvsfkYpeee.kaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevle 690
                 ++ l+ ++++G++ +++v+f+Yp +  ++ L+ +s++i +G  va +G  G GKst+ kll ++y+p eG v ldg+di+++++++lr+ igyv q+++Lf+ t+  Ni +gap+++ +e+++aa+la +++f+++ p+G+++q+g++G++LSgGQ+q +a+aR+l+ +p+illLDE tsalD++se  + e+L+++++  ++T v+++Hr s ++ +d i v+  G+iv  G++d+++ 
  MMETSP1061-20121228|6040_1 374 STGLQPTDVEGQLTFEDVRFNYPTRPgHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIIStqQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMM 613
                 56678899**************98861567899*******************************************************************************************************************************************************************998789*********************************99875 PP

  == domain 3    score: 207.6 bits;  conditional E-value: 8.7e-64
   TIGR03375 456 llsreklkGeielknvsfkYpee.ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqig.erGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevlea 691
                  l +e+    i +++vsf+Yp + ++  L++ +lki  Ge +++ G  G GKst++ l+ ++y+p+eG+v + g d+++++++  r++igyv q++tLf +t+ +Nia+gap+a+ +++  aa++a + +f+ + p+ +d+ i+  +G++LSgGQ+q +a+aRal+k+p+illLDE tsalDn+se+ + e+L +l++  d+T v+++Hr s ++ +dri  + +Gr+   G++de++e+
  MMETSP1061-20121228|6040_1 658 RLAKEDAMPLIVFRSVSFSYPTRpNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPSATRKQIESAAKQANAYDFIMDFPDKFDTVIAgGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMEskDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEK 897
                 556666667799********987256789****************************************************************************************************************9961579***********************************************9987799*********************************99987 PP

  == domain 4    score: 15.5 bits;  conditional E-value: 1.2e-05
   TIGR03375  219 kvdlilsaklfervlglrlea.rpasvGsfasqlrefesvrdfltsatltalvDL.pfvllfllvialiggplvlvplvavplv.llvglllqkpl..sklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGv 393 
                  +++ ++ +  f+ +++ +++  +++svG ++s+l+e  +  + +t   + ++      vl+ l++ ++  ++ ++v l++vp++ ++++l +++ +  ++ aee+++e+++  +++ve+l ++ t+ al  e+++ k++++++ +  ++ + + + + +l  l++++qq ++ + +  G 
  MMETSP1061-20121228|6040_1 1068 RMNRRVRDDAFRSLVRQEVSFfDKRSVGMITSELQEDATRIQTFTGDPIRSILTAgSSVLIGLTLSFFYMWEFAIVALACVPVMgVATSLEMKQLFgeDEGAEETQEEASSPGGIIVETLLNMGTVSALTMEEERYKNYQDAMTNDNENYVWAGVREGVLAGLSMFIQQWINALEIYYGG 1247
                  555555666666666666653267788999888888666556666666666554415566678888888899999999999999445566666666445689*******************************************************************99888777775 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.1    0.0043      0.31      21     234 ..       7     222 ..       2     227 .. 0.85
   2 !  216.9   0.0   1.8e-66   1.3e-64     316     528 ..     379     596 ..     349     597 .. 0.93
   3 !  199.4   0.0   3.5e-61   2.5e-59     314     527 ..     660     878 ..     634     880 .. 0.92
   4 ?   -2.5   0.0       5.6   4.1e+02      46     155 ..    1044    1149 ..    1035    1175 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0043
   TIGR02857  21 aqAallarvvssli.aagealaelltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikri.seeyrerTmevLriAfLSslvL 234
                 a+A++ ++++s+l   ++++l  ++  +  l+++ +   +++ l+ a  + +a+++ + l+ + +++++++  a    ++ g +at ++ + +     + r + + ++  ++ +  +++ l  +w  al++l   P++ +F   +    q+++ +  +a s+ ++     v+g++t+  +++ ++ +++ +++ +++++ +T   +r  f  +++L
  MMETSP1061-20121228|6040_1   7 AIAWIFSTSFSDLGgTSQNGLGPIKEIAFWLLGIGVYALVISTLQTACFEVVAYKAAHSLKLQWFQALLRQDVAFFDVHDVGGIATSITPAANRYRRGVGRKFGEGIQFFTTGVGGIVFSLYSEWRLALLVLSFCPVVAFFATGLVTINQSKSARSGKAYSKAGSIAYSTVSGIKTVLSLNAISRMVSKYNSAtEDAFKIATKPLIRQGFTAGMML 222
                 6778888888877212223344555556677778888889999999999999*******************9999999*******************9*999999999999999999999*********************9999999999*****************************999998888776515678888888888777766665 PP

  == domain 2    score: 216.9 bits;  conditional E-value: 1.8e-66
   TIGR02857 316 aaass.slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkivv 528
                  ++   +l++e+v + y+ r    +l+++s+++++g++va vG+SG GKst++kll +f +p eG ++++g +++el+ +++r+ i++v+Q+P+lf++t+a+ni  + ++ s++e+ +a++ a++++++++lp+g+et++G++g++LSgGq+qR+a+Ar+l+ + ++lllDE t++LD+++e  v+eal++++  ++rt++++aHrl+++++ad i v
  MMETSP1061-20121228|6040_1 379 PTDVEgQLTFEDVRFNYPTRPghTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIIstQQRTTVIIAHRLSTIRNADIIAV 596
                 3333369**********888776799*********************************************************************************************************************************************************************987799*****************8865 PP

  == domain 3    score: 199.4 bits;  conditional E-value: 3.5e-61
   TIGR02857 314 ltaaassslelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgletei.GergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkiv 527
                 ++++a+  + ++ vs++y+ r    +l++++l++ +ge+++l+G SG GKst++ l+ +f +p+eG+++  g+++++l+ + +r+qi++v+Q+P+lf++t+ eni+++ + a++++++ a+++a++ +++ + p+ ++t i G +g++LSgGq+qR+a+Aral+++ ++lllDE t++LD+e+e  v+eal++l+  + +t +++aHrl+++++ad+i 
  MMETSP1061-20121228|6040_1 660 AKEDAMPLIVFRSVSFSYPTRPnrMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPSATRKQIESAAKQANAYDFIMDFPDKFDTVIaGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMesKDHTCVVIAHRLSTIRNADRIA 878
                 334444599*********887655689******************************************************99********************************************************986899*************************************************976789****************985 PP

  == domain 4    score: -2.5 bits;  conditional E-value: 5.6
   TIGR02857   46 alaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalillltlP 155 
                  ++ ++++++++ +l+ w    a++r+  +v+++  ++l+++      +   k++ g +++ l e    ++ +    +  ++ a    l+ l+  ++  w  a++ l  +P
  MMETSP1061-20121228|6040_1 1044 WVILVVVCVTGNMLMFWGFGNASERMNRRVRDDAFRSLVRQ----EVSFFDKRSVGMITSELQEDATRIQTFTGDPIRSILTAGSSVLIGLTLSFFYMWEFAIVALACVP 1149
                  56777888888888889888888887777766555555444....33445555666666666666666666655555555555555555555555555555555555555 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.4       6.6   4.8e+02     153     259 ..     128     233 ..     123     246 .. 0.68
   2 !  228.6   0.0   4.5e-70   3.3e-68     329     571 ..     380     626 ..     372     638 .. 0.95
   3 !  193.8   0.0   1.5e-59   1.1e-57     335     569 ..     668     908 ..     653     925 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 6.6
   TIGR01192 153 amdlrlslvlvvlgivyvliaklvmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldwwalasglnriastislviilv 259
                   ++rl+l++++++ v  + a  +++  +   a   + y +  +    ++s +  v s n i    ++ ++ te  +   +  l    +++g+  + s + + iil 
  MMETSP1061-20121228|6040_1 128 YSEWRLALLVLSFCPVVAFFATGLVTINQSKSARSGKAYSKAGSIAYSTVSGIKTVLSLNAISRMVSKYNSATEDAFKIATKPLIRQGFTAGMM-LGSFLIMYIILT 233
                 5689999999988877777666555555555666667777777777788999999999999999999999999987765555455556666654.445555555544 PP

  == domain 2    score: 228.6 bits;  conditional E-value: 4.5e-70
   TIGR01192 329 knvkgavefrdisfefans..sqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidal..rknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllrasg 571
                 ++v+g++ f+d+ f+++    +  +  +s+++ ag+tva vgp+g gk+t++ ll+r ydp +g + +dg+di+ ++ + lr  i  v q+  l+  +i +ni+ g  + ++ e+v+aak a a+dfi++  +gy+t+vg++g++lsgg++qr+aiar ++    il+ldeatsald ++e  v++a++ +  +++rtt iiahrlst+r+ad++  +  g ++e g+ d+l+ ++  ++kl+ + g
  MMETSP1061-20121228|6040_1 380 TDVEGQLTFEDVRFNYPTRpgHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIisTQQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMSETYYKKLVDTQG 626
                 5799************975213446789****************************************************************************************************************************************************************98744689**********************************************99887 PP

  == domain 3    score: 193.8 bits;  conditional E-value: 1.5e-59
   TIGR01192 335 vefrdisfefanssqgvrd..vsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlv.gergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidal..rknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqk.dgrfakllra 569
                 + fr +sf ++   + +      +++  g+t+ + g +g gk+t++ l++r ydp++g++   g d++ ++ +  r  i  v q+  l++ +i eni +g  +at +++  aak a a dfi +  +++dt++ g  g++lsgg++qr+aiara++k   il+ldeatsald e+e  v++a+d l  +k+ t  +iahrlst+r+ad + f+ +gr+ e gs del++k +g++++l+ +
  MMETSP1061-20121228|6040_1 668 IVFRSVSFSYPTRPNRMILdkFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPSATRKQIESAAKQANAYDFIMDFPDKFDTVIaGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLmeSKDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEKpNGKYKRLVES 908
                 789*******987666544015556668*******************************************************************************************************875899***********************************************99556999***********************************98768999999864 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       5.9   4.3e+02     153     257 ..     145     247 ..     125     249 .. 0.72
   2 !  219.5   0.1   2.3e-67   1.7e-65     309     541 ..     378     612 ..     357     614 .. 0.94
   3 !  172.8   0.0     3e-53   2.2e-51     326     542 ..     678     896 ..     660     897 .. 0.94
   4 !   14.7   0.1   2.4e-05    0.0017      53     249 ..    1045    1249 ..    1027    1253 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 5.9
   TIGR01842 153 vlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikgeita 257
                   +a++l+  +++++k +++ +a +ka + + s+   ++ + +l  ++++++++++ ++ a +  ++   r+g+ +++   + +++ + ++  G+y+  k+  ++
  MMETSP1061-20121228|6040_1 145 AFFATGLV--TINQSKSARSGKAYSKAGSIAYSTVSGIKTVLSLNAISRMVSKYNSATEDAFKIATKPLIRQGFTAGMMLGSFLIMYIILTLYGSYVIYKDVFAT 247
                 33333333..34555666677777888888888888888888888899999999999888888888888888888888888888888888888888776665555 PP

  == domain 2    score: 219.5 bits;  conditional E-value: 2.3e-67
   TIGR01842 309 klPepegelevenvslvppe.ekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkel.karkitvvvithrpsllelvdkilvlkdGalkafGereevl 541
                 +  ++eg+l+ e+v +  p+   +++l+g+s+ + aG+++a +Gpsg Gks++++ll   + p +G vrlDg+d+k+ + ++l  +iGY+ q+  Lf+ t+a+ni+    n    ++++aakla++h++i +lp+GY+t++g++G++LsgGq+qRia+aR l g+Pk+++LDe  + LD++ e  + +al+++   +++t+v+i+hr s ++ +d i+v+  G++ + G++++++
  MMETSP1061-20121228|6040_1 378 QPTDVEGQLTFEDVRFNYPTrPGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIiSTQQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLM 612
                 555789*********98775157899********************************************************************************************************************************************************************996378999*******************************99876 PP

  == domain 3    score: 172.8 bits;  conditional E-value: 3e-53
   TIGR01842 326 ppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdtei.gegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelk.arkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542
                 p + ++ +l + ++++ +Ge++++ G sg Gks+++ l+   + p++G+v+  g d+k+ + + +  +iGY+ q+  Lf+ t++enia     a+ +++  aak a+++++i+ +p+ +dt+i g +G++LsgGq+qRia+aRal  +P +++LDe  + LD+e e  + +al +l   +  t vvi+hr s ++ +d+i+ + dG++k+ G+++e+++
  MMETSP1061-20121228|6040_1 678 PTRPNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPSATRKQIESAAKQANAYDFIMDFPDKFDTVIaGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMeSKDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELME 896
                 55678899********************************************************************************99999*****************************944679*********************************************99851677999*******************************9986 PP

  == domain 4    score: 14.7 bits;  conditional E-value: 2.4e-05
   TIGR01842   53 vvlylvlglleavRskvlvrigekldkalnkkifkaaieatlerkkkeslqal.....rDldqlrqFltgtgliaffDlPwlp.iyllvvfllhpylGllalvgavvlvalal..lneaatk.kklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGayl 249 
                  v+l++v ++ +++    +   +e+++ +++++ f++ ++++++  +k+s  ++     +D +++++F tg+ + +++ +  ++ i l++ f     + ++al+++ v+ + +   +++ + + + ++e++e+ +     + ++l n   + al+m +e +k++++  ++  ++   a  r g+l++ls ++   +  l +  G++l
  MMETSP1061-20121228|6040_1 1045 VILVVVCVTGNMLMFWGFGNASERMNRRVRDDAFRSLVRQEVSFFDKRSVGMItselqEDATRIQTF-TGDPIRSILTAGSSVlIGLTLSFFYMWEFAIVALACVPVMGVATSleMKQLFGEdEGAEETQEEASSPGGIIVETLLNMGTVSALTMEEERYKNYQDAMTNDNENYVWAGVREGVLAGLSMFIQQWINALEIYYGGWL 1249
                  4444444444444445556889*****************9997666655443311112688899998.777888888887655055666665555567777766655544444223455555145666777777778889999***********************************************9999999999899887 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.2     0.084       6.1     198     403 ..      33     239 ..      23     248 .. 0.70
   2 !  203.4   0.0     2e-62   1.4e-60     468     707 ..     380     623 ..     366     624 .. 0.94
   3 !  170.6   0.0   1.7e-52   1.2e-50     466     707 ..     660     907 ..     647     908 .. 0.92
   4 !   21.3   0.0   2.5e-07   1.8e-05     226     366 ..    1068    1212 ..    1020    1252 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.084
   TIGR01193 198 islglilayilqqvlsyikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiid.alastilslfldlsilvivglvl.vlqniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGall 403
                 i+  l+ + ++  v+s +++  + v++ + +  + l++ + l+   ++ff    vG i +  t a++     ++   +   + +    + g+v+ ++ + +l ll+l   Pv a     ++   +  +  + +a +   s     ++Gi+t+ sl++ +   +k +s  +d ++ + k  + +     +     li+ +++  +G+++
  MMETSP1061-20121228|6040_1  33 IAFWLLGIGVYALVISTLQTACFEVVAYKAAHSLKLQWFQALLRQDVAFFDVHDVGGIATSITPAANRYRrGVGRK-FGEGIQFFTTGVGGIVFsLYSEWRLALLVLSFCPVVAFFATGLVTINQSKSARSGKAYSKAGSIAYSTVSGIKTVLSLNAISRMVSKYNSATEDAFKIATKPLIRQGFTAGMMLGSFLIMYIILTLYGSYV 239
                 6777888899999999999999999999999999999999999999999999999999988887765544044443.33333333333344443156778888888888888888888777777777777778888888888888999999999998888887777777666665555544444444444444555555555566655 PP

  == domain 2    score: 203.4 bits;  conditional E-value: 2e-62
   TIGR01193 468 enlngdievndvsysyGy..gsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldllte...kkivenllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyaslih 707
                 + ++g+++++dv ++y    g+ +l+ +s++i + ++++ vG sG Gkst++kll +f+++ +G + l+g+++k+++ ++lr +i y+ qeP +f+ +i +n+  ga +n s+ ei ka ++a+ +d i +lp Gy+t++ +++s++sgGqkqr+a+ar l+ + k+l+lde+ts ld   e   +  +en+++ +++t + +ahrls  +++d i v+  G i+e+G+h++l+ ++ +y++l++
  MMETSP1061-20121228|6040_1 380 TDVEGQLTFEDVRFNYPTrpGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGA-PNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSElvvQEALENIISTQQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMSETYYKKLVD 623
                 567899**********864489********************************************************************************99998.7999******************************************************************86553338889*****************************************************985 PP

  == domain 3    score: 170.6 bits;  conditional E-value: 1.7e-52
   TIGR01193 466 elenlngdievndvsysyGy..gsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelse.eassisgGqkqrlalarallsdskvlildestsnldlltekki...venllklkdktiifvahrlsvakksdkiivldeGkiieqGshkellke.nGfyaslih 707
                 ++e +   i++  vs+sy    ++ +l++ +lki + e+i l G+sG Gkst++ l+ +f+++e+G+++  g ++k+++ +  r  i y+ qeP +f+ +i en+ +ga + +++++i+ a + a+  d i ++p  ++t ++  +++++sgGqkqr+a+aral+ + ++l+lde+ts ld   e+ +   +++l++ kd t + +ahrls  +++d+i  + +G++ e Gsh+el+++ nG y++l++
  MMETSP1061-20121228|6040_1 660 AKEDAMPLIVFRSVSFSYPTrpNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGA-PSATRKQIESAAKQANAYDFIMDFPDKFDTVIAGgSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVqeaLDKLMESKDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEKpNGKYKRLVE 907
                 556666678999******8733678***********************************************************************************9.5678899*************************9637899*********************************9997443337899******************************************8659****9985 PP

  == domain 4    score: 21.3 bits;  conditional E-value: 2.5e-07
   TIGR01193  226 rlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalastilslfldlsilvivglvlvlqniklflls.lvaiPvyaviiil.fkktfekl..nkdameanavlnssiiedlnGietiksltseeerykkidsefad 366 
                  r+ + +  +  + l+   +sff  r vG i+s + + ++ i++++   +   l     v++gl l +  +  f ++ l ++Pv  v   l +k+ f +    +++ e ++     i+e l  + t+ +lt eeeryk+ ++ +++
  MMETSP1061-20121228|6040_1 1068 RMNRRVRDDAFRSLVRQEVSFFDKRSVGMITSELQEDATRIQTFTGDPIRSILTAGSSVLIGLTLSFFYMWEFAIVaLACVPVMGVATSLeMKQLFGEDegAEETQEEASSPGGIIVETLLNMGTVSALTMEEERYKNYQDAMTN 1212
                  4555555555667777889**************987777778887777777789999999*******99988876527789***998876155566443114556666667777899*******************998876654 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       2.1   1.5e+02     155     244 ..     134     221 ..     115     237 .. 0.73
   2 !  182.9   0.0   2.9e-56   2.1e-54     331     530 .]     382     585 ..     344     585 .. 0.90
   3 !  151.9   0.0   7.2e-47   5.2e-45     308     530 .]     641     868 ..     628     868 .. 0.92
   4 !   16.0   0.0   1.1e-05    0.0008      83     340 ..    1068    1329 ..    1064    1339 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.1
   TIGR02868 155 aalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaalt 244
                 a lvl  + +va+++  lv++  ++sa + +a +++   + + ++++g ++     a  +++ ++++a +++ +++ +   +++++a+++
  MMETSP1061-20121228|6040_1 134 ALLVLSFCPVVAFFATGLVTINQSKSARSGKAYSKA--GSIAYSTVSGIKTVLSLNAISRMVSKYNSATEDAFKIATKPLIRQGFTAGMM 221
                 456788899999999999999888888776655443..3444555666666666667788899999999999999999888888888876 PP

  == domain 2    score: 182.9 bits;  conditional E-value: 2.9e-56
   TIGR02868 331 ekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530
                  + +l+++d++++yp+ +   +l+g+s+d+++G+ va vG+sG GKst+++ll ++ dpl+G v ldg+++++l+ +++r ++ ++ q++ lF+tt+ +N+  ++p+++  e+ +a + +  +d + +LpdG++t++g++g++lSGG++qR+a+AR+L+ + ++llLDE t  LD + e  + e+L     +++rt+v+++hrl
  MMETSP1061-20121228|6040_1 382 VEGQLTFEDVRFNYPTRPGhtILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALEniISTQQRTTVIIAHRL 585
                 25699**********998767*************************************************************************************************************************************************************999888887555788999******86 PP

  == domain 3    score: 151.9 bits;  conditional E-value: 7.2e-47
   TIGR02868 308 eevldakvevaeasapaaeaaasekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtkl.geggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt..vvlvthrl 530
                  ++++++++ + +++p+  a ++  p +++r +s+syp+ ++  +l++ +l++ +Ge + + G sG GKst++ l+ ++ dp++G+v   g +v++l+ +  r  + ++ q++ lFd+t++eN+ +++p at +++++a +++   d + ++pd  dt++ g+ g++lSGG++qR+a+ARaL+++ ++llLDE t  LD e e+ + e+L + +e++    v+++hrl
  MMETSP1061-20121228|6040_1 641 GQLAKTESQIGFEKVPERLAKEDAMPLIVFRSVSFSYPTRPNrmILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPSATRKQIESAAKQANAYDFIMDFPDKFDTVIaGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDhtCVVIAHRL 868
                 56777788888889999999999999*************98889*******************************************************************************************************************944679*************************************999888888665554333999**986 PP

  == domain 4    score: 16.0 bits;  conditional E-value: 1.1e-05
   TIGR02868   83 rslgelRvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrse.....laaqlldllegaaelvva.GaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaasekptlelrdl 340 
                  r+  ++R + +++L r++ ++  + + G + + l +D   +q ++   i  +++A   +l+   l+++ ++++a+v++a++ v++v+ +l    +  + e a++ + ++     +  ++l  +  ++ l++   + +++++++ + +++++ a  r+  +++l+  +++++ +l +    ++  +   +  l+  ++  + ++ +++f   aa+ + a+  ++ +++a+Ri  +ld  +  +  s++ +  ++++k +  +r++
  MMETSP1061-20121228|6040_1 1068 RMNRRVRDDAFRSLVRQEVSFFDKRSVGMITSELQEDATRIQTFTGDPIRSILTAGSSVLIGLTLSFFYMWEFAIVALACVPVMGVATSLEMKQLFGEDEGAEETQEEAsspggIIVETLLNMGTVSALTMEeERYKNYQDAMTNDNENYVWAGVREGVLAGLSMFIQQWINALEIYYGGWLLYRFPEKYVLNDFLISNFAII-FSLFGLGAAFQDIAD-RKQTEKSASRIFYLLDRTSAIDPLSDKGKTLTKQQKRSKSMRRV 1329
                  67789*************************************9996555555555555555567888999******************9987777666665554444330111133344444455667776524667788888888999999999999999999999999999999988888886555555555555555443.566666666655544.35678899999999988854444444444444445555555555 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.9   0.0   8.8e-42   6.3e-40      15     233 ..     402     614 ..     386     622 .. 0.91
   2 !  134.1   0.0   1.6e-41   1.1e-39      13     237 ..     682     901 ..     668     907 .. 0.86

  Alignments for each domain:
  == domain 1    score: 134.9 bits;  conditional E-value: 8.8e-42
   TIGR00972  15 ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeL..kkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                 + l+ ++++i++ k +a++GpsG Gkst+++ l r+ d +     eG v l+g di +  l+v++lr+ +G v q+p  f+ +i +n++yg       +  +  +++++    + l d  ++++ +++ +LsGGq+qr++iar l  +P++lLlDe tsaLD+++   ++e ++++   ++ t vi+ h ++ ++r +d +a+++ G++ve+g+ ++++++
  MMETSP1061-20121228|6040_1 402 TILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPL-----EGCVRLDGIDIKE--LNVKHLRSMIGYVGQEPALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIisTQQRTTVIIAHRLS-TIRNADIIAVVMGGTIVETGTHDKLMMS 614
                 67999*********************************98.....899*******965..699****************************877777777888888888888899**********************************************************99833456899******97.6899*****************9999875 PP

  == domain 2    score: 134.1 bits;  conditional E-value: 1.6e-41
   TIGR00972  13 ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaal...wdevkdklk.ksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnmqqaarvsdktaffleGelveegeteqifekpkek 237
                 +++ l++ +l+i++ + ++l G sG Gkst++  + r+ d       eGkv + g+d+   kl+v+ +r ++G v q+p+ f  +i +n+a+g        +k+++++++++     +    d+  + +   s+++LsGGq+qr++iaral  +Pe+lLlDe tsaLD ++ + ++e +++L ++   t v++ h ++ ++r +d++af+ +G++ e g+ ++++ekp+ k
  MMETSP1061-20121228|6040_1 682 NRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPE-----EGKVEYFGEDVK--KLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPSAT---RKQIESAAKQANAYDFImdfPDKFDTVIAgGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESkdHTCVVIAHRLS-TIRNADRIAFIGDGRVKEIGSHDELMEKPNGK 901
                 4678999*********************************98.....9*********96..57999***************************98875...5566666655554444400044554444325899***********************************************765459********97.6899************************9865 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0   4.1e-39   2.9e-37       9     228 ..     404     620 ..     399     649 .. 0.88
   2 !  128.1   0.1   1.3e-39   9.4e-38      10     227 ..     687     904 ..     682     949 .. 0.85

  Alignments for each domain:
  == domain 1    score: 126.4 bits;  conditional E-value: 4.1e-39
   TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvd.l.eeyedryPd...elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaneyvee 228
                 +n ++++i  G  + ++G+sG Gkst+v+ll+r+ +P +G + +dG di e++ ++l    r  i++v q+ alf   ti +nis+g      +e  +  k  +a   +  l ++ye +  d   +lsGG++qr+ +ar l  +P++ll+dea sald      +q+ l ++ ++ q+t v i+h l  ++r +d i+++  G iv  Gt d++++   + y ++
  MMETSP1061-20121228|6040_1 404 LNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHL----RSMIGYVGQEPALFA-TTIAKNISYGAPNCSHSEIVKAAKLANAHDFIShLpDGYETQVGDkgsQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLS-TIRNADIIAVVMGGTIVETGTHDKLMMS--ETYYKK 620
                 577899***************************************************....999***********7.79********877776666666665555555541567788877653338*************************************************************6.79**********************9984..455555 PP

  == domain 2    score: 128.1 bits;  conditional E-value: 1.3e-39
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealk.lvdl.eeyedry....PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaneyve 227
                 ++ +l+i++Ge i + G+sG Gkst++ l++r+ +P +Gk+   Ged+ +++ +      r +i++v q+ +lf   ti +ni++g   +  ++ e   k  +a    +d+ +++          +lsGG++qr+ +aral  +P++ll+dea sald      +q+ l kl +  ++t v i+h l  ++r +dri+ + +G +  +G+ de+++ P  +y +
  MMETSP1061-20121228|6040_1 687 DKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWY----RDQIGYVGQEPTLFD-ATISENIAFGAPSATRKQIESAAKQANAYDfIMDFpDKFDTVIaggsGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLS-TIRNADRIAFIGDGRVKEIGSHDELMEKPNGKYKR 904
                 56789*******************************************99987766....99***********95.8********9876655544444443333331456634444332222268**************************************************************6.79***************************999965 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.0   4.3e-33   3.1e-31      14     219 ..     402     612 ..     393     622 .. 0.88
   2 !  119.8   0.0   3.9e-37   2.8e-35      14     226 ..     684     902 ..     673     907 .. 0.87

  Alignments for each domain:
  == domain 1    score: 106.5 bits;  conditional E-value: 4.3e-33
   TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrd..reiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdry.......psqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevy 219
                 ++l+ ++++++ G+ va++GpsG Gkst+++++  + +p +G ++l+G d+ +++v++    iG+v q+ alf   t+ +ni++G     +++  + ak+ +  +++   +l d y        sqlsGGq+qr+a+ar l  +p++lllde  +ald++    +++ l ++    + ttv+++h  + ++  ad i+v+  G i + g+ ++++
  MMETSP1061-20121228|6040_1 402 TILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHlrSMIGYVGQEPALFA-TTIAKNISYGAPNCSHSEIVKAAKLANAHDFIS--HLPDGYetqvgdkGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLS-TIRNADIIAVVMGGTIVETGTHDKLM 612
                 679999**********************************************9998853157***********7.69*********9999999999999998888874..3333331111111689***********************************************************876.5778****************999876 PP

  == domain 2    score: 119.8 bits;  conditional E-value: 3.9e-37
   TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelv.ql.....eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepataf 226
                  +ld+ +l++ +G+ ++l G sG Gkst++ +i  + +p++G++   G+dv +++v+  + +iG+v q+ +lf   t+++niafG     +++ +  ak  +  +++ ++     + ++    +qlsGGq+qr+a+aral  +p++lllde  +ald +  + +++ l kl +  + t+v+++h  + ++  adri+ + +G+++++gs +e++++p  ++
  MMETSP1061-20121228|6040_1 684 MILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKwyRDQIGYVGQEPTLFD-ATISENIAFGAPSATRKQIESAAKQANAYDFImDFpdkfdTVIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLS-TIRNADRIAFIGDGRVKEIGSHDELMEKPNGKY 902
                 57999***********************************************9988744779***********7.6*********987766666655555555554314421111234555679************************************************************876.6778*************************8765 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.1   0.0   1.8e-37   1.3e-35    1283    1511 ..     384     616 ..     373     626 .. 0.89
   2 !  104.9   0.0     7e-33     5e-31    1286    1509 ..     669     897 ..     647     909 .. 0.91
   3 ?   -1.9   0.1       1.1        82    1037    1093 ..    1070    1126 ..    1039    1160 .. 0.70

  Alignments for each domain:
  == domain 1    score: 120.1 bits;  conditional E-value: 1.8e-37
   TIGR00957 1283 grvefrnyslry..redldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldp.fsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqf..edctvltiahrlntimdytrvlvldkgevaefdapsellqqrg 1511
                  g++ f +  + y  r++   +l+ l++ i  g+ v  vg +g gks++   l r  +  eg +++dg++i ++ +++lr+ +  + q+p lf+ ++  n+     + s+ e+  a +la  +df+s lpd+ + +  + g +ls gq+q + +ar l+ k kil+ldeat+a+d +++ ++q ++   +  ++ t + iahrl ti +   + v+  g + e ++  +l+ +  
  MMETSP1061-20121228|6040_1  384 GQLTFEDVRFNYptRPG-HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYgAPNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIIstQQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMSET 616 
                  56666666666632333.56899****************************************************************************98514578999******************************************************************9999998876544114567788**************************9999987654 PP

  == domain 2    score: 104.9 bits;  conditional E-value: 7e-33
   TIGR00957 1286 efrnyslryred.ldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfs..qysdeevwlalelahlkdfvsalpdkldfecaeg.genlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfe..dctvltiahrlntimdytrvlvldkgevaefdapsellqq 1509
                   fr  s+ y      ++l +++++i  ge +g+ g +g gks++   + r  +  eg++   g ++ k+ ++  r ++  + q+p lf  ++  n+  f+  + + +++  a + a   df+   pdk+d   a g g +ls gq+q + +aral++k  il+ldeat+a+d e++ ++q ++   +e  d t + iahrl ti +  r+  +  g v+e+++  el+++
  MMETSP1061-20121228|6040_1  669 VFRSVSFSYPTRpNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIA-FGapSATRKQIESAAKQANAYDFIMDFPDKFDTVIAGGsGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMEskDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEK 897 
                  577777777543146899************************9988889**********************************************96.5512455789***********************999876899******************************************987765337899********************************9975 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 1.1
   TIGR00957 1037 srvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnv 1093
                   r++  d + + +r   sff++   g +   +  +   ++    + i+ +l++  +v
  MMETSP1061-20121228|6040_1 1070 NRRVRDDAFRSLVRQEVSFFDKRSVGMITSELQEDATRIQTFTGDPIRSILTAGSSV 1126
                  57888899999*****************99999998877776666666555443333 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.0   0.0   9.6e-32   6.9e-30       2     188 ..     420     611 ..     419     621 .. 0.87
   2 !  118.4   0.0     1e-36   7.4e-35       1     237 [.     701     949 ..     701     966 .. 0.82

  Alignments for each domain:
  == domain 1    score: 102.0 bits;  conditional E-value: 9.6e-32
   TIGR01187   2 LGpsGsGkttlLrllaGleeldsGkilldgedvtevp.aekr.svnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelv.ql....eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeei 188
                 +GpsG Gk+t+++ll  + ++ +G + ldg d+ e    ++r  ++ v q+ aLf   t+++n+++g       +   +++  +a + + +l    e+    k sqlsGGq+qr+a+ar +v kPkiLLlDe+ saLD +    +q+ l+++      t+v+++h     +  +d iav+  G i+  g+ +++
  MMETSP1061-20121228|6040_1 420 VGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNvKHLRsMIGYVGQEPALFA-TTIAKNISYGAPNCSHSEIVKAAKLANAHDFIsHLpdgyETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRL-STIRNADIIAVVMGGTIVETGTHDKL 611
                 7********************************986514555269**********7.69********9888888877888888888776345322245566789*************************************************************76.5899**************99998765 PP

  == domain 2    score: 118.4 bits;  conditional E-value: 1e-36
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvt..evpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelv.....qlee.fakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePanefv....arfiGeinvfeatvie..rkeeslvlagvegrelkikedlav 237
                 l G sG Gk+t++ l+  + ++++Gk+   gedv   +v  ++ +++ v q+  Lf   t+ en+afg      ++ e +++  +a + +     ++++ +a    +qlsGGq+qr+a+ara+vkkP+iLLlDe+ saLD++    +q+ l +l e    t+v+++h     +  +dria + +G+++ ig+ +e+ e+P+ ++     ++  G ++ ++ +v +  +k++s+v+++ve  e ++++++  
  MMETSP1061-20121228|6040_1 701 LCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKklNVKWYRDQIGYVGQEPTLFD-ATISENIAFGAPSATRKQIESAAKQANAYDFImdfpdKFDTvIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRL-STIRNADRIAFIGDGRVKEIGSHDELMEKPNGKYKrlveSQARGASTALHGLVSKskKKKKSKVMEDVEEEEGNLDKEIEK 949
                 5699******************************8225677899************6.7*********998888888888877777776522222233324667889************************************************************76.5899***************************99952222455577777766654311445567777777777766666655 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.1   0.0   1.4e-33   9.9e-32       3     222 ..     387     614 ..     385     623 .. 0.87
   2 !  110.9   0.0   1.9e-34   1.4e-32       5     224 ..     671     899 ..     667     907 .. 0.85

  Alignments for each domain:
  == domain 1    score: 108.1 bits;  conditional E-value: 1.4e-33
   TIGR03864   3 eveglsfaygkr...ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealar.lGvvfqqstlDldlsveqnlryhaaL...hGlsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaae 222
                 + e+++f+y +r   ++l+++s++++ g+ va +Gp G Gkst+++ll r y+  eg +++ G d+++ +++ l++ +G v q+++l    ++++n++y a       + +a+  ++ ++ +++l  g + +  +k  +L+GG+++r+ iar l+ +Pk+LLlDeat  LD +s   ++e++++++ +++ + +   h +  ++++d + v+  G ++ +G+ ++l+ +
  MMETSP1061-20121228|6040_1 387 TFEDVRFNYPTRpghTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSmIGYVGQEPALF-ATTIAKNISYGAPNcshSEIVKAAKLANAHDFISHLpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMS 614
                 56778888876533378*******************************************************999736********95.689*******99651103455666666666666666446788889999*************************************************99999999999***************************99875 PP

  == domain 2    score: 110.9 bits;  conditional E-value: 1.9e-34
   TIGR03864   5 eglsfayg...krralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryhaaLhGlsrae.aeerieealarlglaeraeekv.....reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224
                 +++sf+y    +r +ld+ +l++ +ge + L G  G Gkst++ l+ r y+ +eg+++ +G d+++ +++  + ++G v q++tl  d ++++n+ + a      + e a+++ ++    +++ ++ ++ +      +L+GG+++r+ iaral+ +P++LLlDeat  LD es + ++e++ +l+++++ + +   h +  ++++dr+  +  G+v+  G+ +el+++ +
  MMETSP1061-20121228|6040_1 671 RSVSFSYPtrpNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRdQIGYVGQEPTL-FDATISENIAFGAPSATRKQIEsAAKQANAYDFIMDFPDKFDTVIaggsgTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEKPN 899
                 667788862224679***************************************************998877548*********9.79*********98765544443133334444445677888777663333369***********************************************99988888889*****************************99866 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.0   0.0   2.1e-31   1.5e-29      19     213 ..     402     596 ..     392     603 .. 0.89
   2 !  117.1   0.0   2.5e-36   1.8e-34      16     219 ..     681     885 ..     667     886 .. 0.89

  Alignments for each domain:
  == domain 1    score: 101.0 bits;  conditional E-value: 2.1e-31
   TIGR02982  19 qvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalel..keklsakeakakaeelleav..gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivk 213
                  +l+ ++++i +g  v + GpsG Gk t++ l+  +    eG +++ g ++k++   +++++r  iGy+ q+  l+ + t  +n+  ++    ++++ ++++ a+a+++++++  g e ++  k ++lsgGqkqr+aiar lv +Pk++l de t+ald++s   v e l+++   q  t ++++h    +  ad i  
  MMETSP1061-20121228|6040_1 402 TILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKEL---NVKHLRSMIGYVGQEPALFAT-TIAKNISYGAPNcsHSEIVKAAKLANAHDFISHLpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTIRNADIIAV 596
                 6999******************************************99988766...56789*************976.77889999875411556888889999*****998668899*******************************************************************8777777776654 PP

  == domain 2    score: 117.1 bits;  conditional E-value: 2.5e-36
   TIGR02982  16 lrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldyk.....pedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                  ++ +l + +l+i +ge + l G sG Gk t++ li  +    eG+++ +g+++k++   +++  r +iGy+ q+  l+++ t ++n+ +++  +++ + + a+++a++    + + +++d        ++lsgGqkqr+aiaralv++P+++l de t+ald++s r v e l kl + +  t ++++h    +  adri  + dG++
  MMETSP1061-20121228|6040_1 681 PNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKL---NVKWYRDQIGYVGQEPTLFDA-TISENIAFGAPSATRKQIESAAKQANAYDFIMDFPDKFDTViaggsGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTIRNADRIAFIGDGRV 885
                 45789**********************************************998766...566789*************97.999******9999998888888888888888999999987522222679**************************************************************9***********9997 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   1.9e-30   1.4e-28      11     202 ..     401     593 ..     389     597 .. 0.84
   2 !  115.4   0.0   7.2e-36   5.2e-34      10     204 ..     682     878 ..     675     880 .. 0.88

  Alignments for each domain:
  == domain 1    score: 97.7 bits;  conditional E-value: 1.9e-30
   TIGR03608  11 keilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkk...evlekv..glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkel.keegktiiivtHdpevaekadr 202
                 ++il+ ls++i +G++va vG sG GKst++ +l ++ ++ +g v l+g + +    + + k lr+ +gy+ q+ aL    t+ +n++ +  +  +s+  k  k+    + + ++  g e++   k  +lsgG+kqR+a+ar+l+ +++++l DE t++LD++++ +v e l+++   + +t +i+ H  +  ++ad 
  MMETSP1061-20121228|6040_1 401 HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIK----ELNVKHLRSMIGYVGQEPALFA-TTIAKNISYGAPNCSHSEIVKAAKLAnahDFISHLpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIiSTQQRTTVIIAHRLSTIRNADI 593
                 69*************************************************43....455667899***********96.69*******98766666555555555000555555445678888899*********************************************997256789999999*9988888775 PP

  == domain 2    score: 115.4 bits;  conditional E-value: 7.2e-36
   TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlek.vglekklkkki.....yelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelke.egktiiivtHdpevaekadrvi 204
                 ++ il+k++lki +Ge++ ++G sG GKst++ ++ ++ ++++gkv ++g++     +k + k +r+++gy+ q+ +L +  t++en+  +     +++ e   k+ ++ +  +++  k ++ i      +lsgG+kqR+a+ar+l+k++e++l DE t++LD++++ +v e l++l e +++t +++ H  +  ++adr+ 
  MMETSP1061-20121228|6040_1 682 NRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGED----VKKLNVKWYRDQIGYVGQEPTLFD-ATISENIAFGAPSATRKQIESAAKQANAYDFiMDFPDKFDTVIaggsgTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMEsKDHTCVVIAHRLSTIRNADRIA 878
                 789*************************************************....45677899**************98.59*******99888888777777777776651556777777763333369*******************************************997652789****************986 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   0.1   1.2e-32   8.5e-31      17     222 ..     401     611 ..     385     649 .. 0.88
   2 !  108.9   0.0   9.2e-34   6.6e-32      18     230 ..     684     902 ..     675     942 .. 0.89

  Alignments for each domain:
  == domain 1    score: 105.3 bits;  conditional E-value: 1.2e-32
   TIGR03265  17 ftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqk.rd.yGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelv.....glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222
                 +t+l+ +s+++ +g  v+++GPsG Gk+t+++++  + ++ +G + l+g di +l +++ r   G v q  aLf   t+a+ni+yG  n   ++   a++++++ + +     g +++     +qlsGGq+qr+a+ar l+ +P++LLLDe  saLD++    ++e l+++    + tt++++h     +  aD i+v+  g+i  +gt  ++
  MMETSP1061-20121228|6040_1 401 HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHlRSmIGYVGQEPALFA-TTIAKNISYGAPNCSHSEIVKAAKLANAHDFIshlpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRL-STIRNADIIAVVMGGTIVETGTHDKL 611
                 6899**************************************************9987535427**********7.6************99999999999999999984223333445555689***********************************999999999999999999*******86.57999****************98765 PP

  == domain 2    score: 108.9 bits;  conditional E-value: 9.2e-34
   TIGR03265  18 talkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq.krd.yGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelv.glsgseeky.....PgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqPatkf 230
                  +l++ +l++ +ge + l G sG Gk+t++ +i  + ++++G++   g+d+ +l ++  rd  G v q  +Lf   t++enia+G  +  +k+ e a++ +++ + + +++++ +        +qlsGGq+qr+a+aral+ +P++LLLDe  saLD      ++e l kl +  + t ++++h     +  aDri+ + +g+++ +g+  e+ e+P+ k+
  MMETSP1061-20121228|6040_1 684 MILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKwYRDqIGYVGQEPTLFD-ATISENIAFGAPSATRKQIESAAKQANAYDFImDFPDKFDTViaggsGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRL-STIRNADRIAFIGDGRVKEIGSHDELMEKPNGKY 902
                 579999***********************************************9987445538**********5.6**********99998988888888888886537877655432222267**********************************999999999****************976.57999*************************9775 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.4   0.0   1.9e-32   1.4e-30       2     232 ..     386     610 ..     385     618 .. 0.84
   2 !  108.2   0.0   1.3e-33   9.3e-32       2     225 ..     668     886 ..     667     899 .. 0.85

  Alignments for each domain:
  == domain 1    score: 104.4 bits;  conditional E-value: 1.9e-32
   TIGR02315   2 levenlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLerv..glaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasse 232
                 l +e+++ +yp+  g+++l+ ++++i  G+ va +G+sG Gkst+++ ++r+ ++ +g + l+g ++++l+ k+   lr+ ig++ qe +l + +t+ +n+  g+ + ++   ++++    ++ ++A + ++++  g + +   + +qLsGGq+qR+aiaR l+ +pk++l DE +++LD +s   v ++l +i   ++ t+++  H+++  ++ ad i  +  g+iv  g+ ++
  MMETSP1061-20121228|6040_1 386 LTFEDVRFNYPTrpGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKH---LRSMIGYVGQEPALFA-TTIAKNISYGAPNCSH--SEIVKA---AKLANAHDFISHLpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTIRN-ADIIAVVMGGTIVETGTHDK 610
                 6788999999875579***************************************************9877655...5677*******99986.6889**9999866543..233333...34444444444443389999999*****************************************************************98875.67666677778877766655 PP

  == domain 2    score: 108.2 bits;  conditional E-value: 1.3e-33
   TIGR02315   2 levenlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlga.kstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageiv 225
                 ++++++s +yp+  ++ +l++ +l+i +Ge +++ G sG Gkst++  i+r+ ++++g+++  g++v+kl   +++  r +ig++ qe  l +  t+ en+  g+ +a +++++s  ++ +   +   ++  ++++    a     qLsGGq+qR+aiaRal+++p+++l DE +++LD++s ++v ++l ++ + k+ t++v  H+++  ++ adri  + +g++ 
  MMETSP1061-20121228|6040_1 668 IVFRSVSFSYPTrpNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKL---NVKWYRDQIGYVGQEPTLFD-ATISENIAFGAPSAtRKQIESAAKQAN--AYDFIMDFPDKFDTV-IAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTIRN-ADRIAFIGDGRVK 886
                 6777888888873357899************************************************966...577899*********99987.6899***98876541455555554433..344566777888865.6777889**************************************************************98865.9999999999875 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.2   0.0   3.3e-30   2.4e-28      24     244 ..     401     616 ..     387     635 .. 0.87
   2 !  103.9   0.0   2.9e-32   2.1e-30      20     233 ..     679     889 ..     668     908 .. 0.88

  Alignments for each domain:
  == domain 1    score: 97.2 bits;  conditional E-value: 3.3e-30
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelv.elrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhp 244
                 +++l+++s+ + +G+tva++G sG Gkst+ +ll  +  P +G v+  G d+++l+ k    +r  +  v q+ ++ + +  + + + g P     ++ ++++ a ++++++ + +  + ++  + +qlsGGq qri+iar l  +Pk+++ldea s ld    +++ e l+++      + ++i+h l+ +++ a+ ++v+ +G ive+ +  ++l +++ 
  MMETSP1061-20121228|6040_1 401 HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVK---HLRSMIGYVGQE-PALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHLpDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTIRN-ADIIAVVMGGTIVETGTH-DKLMMSET 616
                 689**************************************************99875...566678999997.4556666666677899*9999**************999874455566777899***************************************************************9976.89999999******8755.44445444 PP

  == domain 2    score: 103.9 bits;  conditional E-value: 2.9e-32
   TIGR02769  20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelv..elrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveei 233
                  +  + +ld+ +l++ +Get++l G sG Gkst+  l+  +  P++G+v + G+d++kl+    k +r ++  v q+ ++ +++  s +   g P    ++++ ++++a + +++     ++++ ++    +qlsGGq qri+iaral  +P++++ldea s ld      + e l kl +    ++++i+h l+ +++ a+r++ + +G++ e  
  MMETSP1061-20121228|6040_1 679 TRPNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNV---KWYRDQIGYVGQE-PTLFDATISENIAFGAPSATRKQIESAAKQANAYDFIMDFpdKFDTVIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTIRN-ADRIAFIGDGRVKEIG 889
                 5667899****************************************************85...678899****998.6899****************************999876652235555677899****************************************************************9975.9**********87754 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   1.1e-28   7.9e-27       3     203 ..     387     591 ..     385     621 .. 0.83
   2 !  108.5   0.0   1.1e-33   7.7e-32       2     204 ..     668     875 ..     667     884 .. 0.86

  Alignments for each domain:
  == domain 1    score: 92.1 bits;  conditional E-value: 1.1e-28
   TIGR02673   3 elekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelv.....gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkel..nkrGttvivathdeelverv 203
                 ++e+v ++y+   g+++L+ +s+ i +g+ +  +G+sG Gk+t++kll     p +G v+++g d+++l+   + +lR  ig v q+  l+ + t+++n+        ++e     +  ++ + +     g e ++  + ++lsgG +qR+aiaR +v kP++ll De t  lD++ +  + + l+++  +++ ttvi+ +h  + +++ 
  MMETSP1061-20121228|6040_1 387 TFEDVRFNYPtrPGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELN---VKHLRSMIGYVGQEPALF-ATTIAKNISYGAPNCSHSEIVKAAKLANAHDFIshlpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIisTQQRTTVII-AHRLSTIRNA 591
                 6999*****9545799*************************************************99886...6789**********9887.5799****8866544444443344444433333212557788899999*******************************************9999632345566655.5777766655 PP

  == domain 2    score: 108.5 bits;  conditional E-value: 1.1e-33
   TIGR02673   2 ielekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrg.kkeeeiqkrveevlelvgledkakal.....peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkeln.krGttvivathdeelvervk 204
                 i ++ vs++y+   +  +L++ +lki +ge + l G sG Gk+t++ l+     p++G+ve +gedv++l+   +   R +ig v q+  l+ d t+ en+a+    +  k+ e+  k+ ++    +++ dk +++      ++lsgG +qR+aiaRa+v+kPe+ll De t  lD+e ++ + + l +l  ++  t +v +h  + +++ +
  MMETSP1061-20121228|6040_1 668 IVFRSVSFSYPtrPNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLN---VKWYRDQIGYVGQEPTLF-DATISENIAFGAPSATrKQIESAAKQANAYDFIMDFPDKFDTViaggsGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMeSKDHTCVVIAHRLSTIRNAD 875
                 7899******94446789*************************************************9986...6689**********9876.78********876555055566677777777889*****998633333579**********************************999999999887515789999999*999988764 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.1   2.1e-30   1.5e-28      13     220 ..     401     612 ..     386     622 .. 0.84
   2 !   97.8   0.0   1.9e-30   1.3e-28      14     221 ..     684     896 ..     672     902 .. 0.87

  Alignments for each domain:
  == domain 1    score: 97.7 bits;  conditional E-value: 2.1e-30
   TIGR03410  13 sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk...ekkipeeiyelFPvl....kemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeld 220
                  ++l+++s+++++g++va +G  g Gk+t++k l   ++  +G ++l+g di++l+  ++ ++ i+yv q   +f++ t++ n+  g+ +++++   + +  ++++++   l    ++    +g +LsGGq+q +aiaR+Lv +Pk+llLDe t  +       ++++++++ ++++ + +++ + l+  ++ ad ++v+  G++v++g++++l 
  MMETSP1061-20121228|6040_1 401 HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNV-KHLRSMIGYVGQEPALFAT-TIAKNISYGAPNCSHSeivKAAKLANAHDFISHLpdgyETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTIRN-ADIIAVVMGGTIVETGTHDKLM 612
                 579**************************************************9986.568999********99986.9*********99887655533333334444433311114455678899*******************************99888889*********999999999999*98887.9***************999864 PP

  == domain 2    score: 97.8 bits;  conditional E-value: 1.9e-30
   TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk...ekkipeeiyel...FPvlke..mlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeelde 221
                 ++l + +l++ +ge++ + G  g Gk+t++  +   ++ ++G++e+ ged++kl+ +   +  i+yv q  ++f   t++en+  g+ ++++k   + + ++++y++   FP   +  +    g +LsGGq+q +aiaRaLv++P++llLDe t  +     + +++++++l ++kd + +++ + l+  ++ adr++ +  G+v + g+++el e
  MMETSP1061-20121228|6040_1 684 MILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVK-WYRDQIGYVGQEPTLFD-ATISENIAFGAPSATRKqieSAAKQANAYDFimdFPDKFDtvIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTIRN-ADRIAFIGDGRVKEIGSHDELME 896
                 7999*************************************************9876.56888******999996.59*********988877554333334445433337765441134567789**************************************************************8887.**************999998765 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.6   0.0   1.5e-28   1.1e-26      12     228 ..     389     612 ..     380     636 .. 0.84
   2 !  104.3   0.0     2e-32   1.4e-30      10     235 ..     669     902 ..     661     921 .. 0.85

  Alignments for each domain:
  == domain 1    score: 91.6 bits;  conditional E-value: 1.5e-28
   TIGR03258  12 eslrvayg...arvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlp.pykrn.lallvqnyalfphlkveenvafGlrarkqskaliaervadalklvq.lsd.aaar...lpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetraly 228
                 e++r +y    ++++l+ ls++i aG+ +a +G+sG Gk+t+++++  f  +  G + + + d+  l   + r+ ++ + q+ alf   ++ +n+++G      s+   a ++a+a   +  l d + ++     +qlsGGq+qr+a+ar lv +p++lllde  sald+q    v+e l+++       tv +++h r  ++  ad i ++  G++++ G+  +l 
  MMETSP1061-20121228|6040_1 389 EDVRFNYPtrpGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNvKHLRSmIGYVGQEPALFA-TTIAKNISYGAPNCSHSEIVKAAKLANAHDFIShLPDgYETQvgdKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTV-IIAH-RLSTIRNADIIAVVMGGTIVETGTHDKLM 612
                 56666664222679**************************************************99862455652799********8.599*******9999999999999*****99875266533333111468******************************************9*999988766665.5667.6788999****************998875 PP

  == domain 2    score: 104.3 bits;  conditional E-value: 2e-32
   TIGR03258  10 vleslrvayga...rvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlp..pykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklv.qlsda.....aarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapadrf 235
                 v+ s++ +y +   r++ld++ l+i  Ge + l G sG Gk+t++ ++  f  ++ G++   + d+ +l    y+ +++ + q+ +lf   ++ en+afG  +  + + + a + a+a   + ++ d      a    +qlsGGq+qr+a+aralv +p++lllde  sald +    v+e l +l +   + t ++++h r  ++  ad+i ++ +G++ + G   +l ++p  ++
  MMETSP1061-20121228|6040_1 669 VFRSVSFSYPTrpnRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNvkWYRDQIGYVGQEPTLFD-ATISENIAFGAPSATRKQIESAAKQANAYDFImDFPDKfdtviAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESK-DHTCVVIAH-RLSTIRNADRIAFIGDGRVKEIGSHDELMEKPNGKY 902
                 5556666665422279**************************************************98752269999***********7.69********988888888888888888875426666511122444578***********************************************9875.678888888.678899*************************98776 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   9.2e-29   6.6e-27       3     208 ..     388     603 ..     386     608 .. 0.80
   2 !  100.2   0.0   3.7e-31   2.7e-29      16     210 ..     688     888 ..     670     891 .. 0.81

  Alignments for each domain:
  == domain 1    score: 92.3 bits;  conditional E-value: 9.2e-29
   TIGR01277   3 lddviyeykhlp.....lefdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsa..pyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqv.....GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208
                 ++dv+++y + p       +++ + aG+ va +G+sG Gkst+++l+  f  p +G +++++ d  ++     +  +  + qe  lfa  t+++ni+ G       + v+  k+ ++   +     G +  +     +lsGGq+qr+a+ar lv +  illlde  sald +    +   ++++ + +++t ++++h+ls + + a+ ++vv  G i 
  MMETSP1061-20121228|6040_1 388 FEDVRFNYPTRPghtilNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNvkHLRSMIGYVGQEPALFAT-TIAKNISYGAPNCSHSEIVKAAKLANAHDFIshlpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTI-RNADIIAVVMGGTIV 603
                 5677777766552211134677889************************************98876654105566778889******95.9********877766666666666555443321244666666677789********************************99888888889999***************975.678999999999886 PP

  == domain 2    score: 100.2 bits;  conditional E-value: 3.7e-31
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikv..ndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpglklnavqkekvedvarqvGiadylerlpe............elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                 +f+l++ +Ge + + G sG Gkst++ li  f  p +G++    +d++++++  y+  +  + qe  lf   t+ +ni++G   + +      +++e++a+q    d++  +p+            +lsGGq+qr+a+ar lv++  illlde  sald+   + +   + kl + k+ t ++++h+ls + + a++++++ dG++k +
  MMETSP1061-20121228|6040_1 688 KFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYfgEDVKKLNVKWYRDQIGYVGQEPTLFD-ATISENIAFGAPSATR------KQIESAAKQANAYDFIMDFPDkfdtviaggsgtQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTI-RNADRIAFIGDGRVKEI 888
                 79*************************************987336677788899***************7.69********755443......3444444444444443333321111222233338**********************************999999999******************975.679***********976 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.2   3.6e-29   2.6e-27       9     212 ..     404     612 ..     400     658 .. 0.86
   2 !  101.4   0.1   1.6e-31   1.2e-29       9     257 ..     686     940 ..     682     965 .. 0.78

  Alignments for each domain:
  == domain 1    score: 93.7 bits;  conditional E-value: 3.6e-29
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelve.lkeaadkkvk....tysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLK 212
                 ++g+++++++g+ ++++GP G GK+t++k+L     P +G +r+ G D+ + + +++R  ig v+q+ ++  + t  +n+   +     ++ ++ ++ ++  ++++ l +  + +v+    ++sgG+++r+ +a+ l+ +P++l LDE t+ LD+++  ++ + +e++ ++ + t+++ +h l  +   ad +a++  G+i+ ++t ++L 
  MMETSP1061-20121228|6040_1 404 LNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKElNVKHLRSMIGYVGQEPALFAT-TIAKNISYGAPNCSHSEIVKAAKLANAHDFIShLPDGYETQVGdkgsQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTqQRTTVIIAHRLSTIR-NADIIAVVMGGTIVETGTHDKLM 612
                 7899*********************************************8647789**************976.6778999999888888888888888777777535555555554333389********************************************98887999999*****9986.59*****************9986 PP

  == domain 2    score: 101.4 bits;  conditional E-value: 1.6e-31
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvr.epdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellel.velkeaadkkv.....ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkkevsllaaelteslleleavevdsdk 257
                 +d+ +lk+++ge +gl G  G GK+t++ ++     P++G++  +G Dv + + +  R +ig v+q+ ++ ++ t  en+ + +     ++ e  ++ ++  ++ +++ ++ d  +      ++sgG+++r+ +a++l+++Pe+l LDE t+ LD ++ r++ + +++l ++ ++t ++ +h l  +   adr+a i  G++  +++ +eL e+ +++  ++++ +++  +++ + l+++ ++++++  +  v++++
  MMETSP1061-20121228|6040_1 686 LDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKlNVKWYRDQIGYVGQEPTLFDA-TISENIAFGAPSATRKQIESAAKQANAYDFiMDFPDKFDTVIaggsgTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESkDHTCVVIAHRLSTIR-NADRIAFIGDGRVKEIGSHDELMEKPNGKYKRLVESQARGASTALHGLVSKSKKKKKSKVMEDVEEEE 940
                 78999********************************************99566789************9875.899***99887766666555555555555413566666555522222689********************************************99888***********9986.59**********************88888877666666555555554444444443322222222222 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   2.1e-28   1.5e-26      14     235 ..     402     612 ..     391     618 .. 0.86
   2 !   97.5   0.0   2.1e-30   1.5e-28      14     240 ..     684     900 ..     674     909 .. 0.87

  Alignments for each domain:
  == domain 1    score: 91.0 bits;  conditional E-value: 2.1e-28
   TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvte.apvlv.kGvaraeaekravelldmv..GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeif 235
                 t+l+gl++++ aG+ va +GpsG Gkst++++l  +    eG ++++g  +  +              ++++r  iG v q+  lf   t+ +n+   ap      + +a+  + a +++  +  G   +     +qlsGGqkqr+aiar l  +pk+ll+de+tsald +    v + l ++ s ++ t ++++h++   r+ ad +     G ive G  d+++
  MMETSP1061-20121228|6040_1 402 TILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKEL-------------NVKHLRSMIGYVGQEPALFAT-TIAKNISYgAPNCShSEIVKAAKLANAHDFISHLpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTIRN-ADIIAVVMGGTIVETGTHDKLM 612
                 89*******************************99999999*****87554433.............345566779999*******85.777888753776441457777777777777776544888899999***********************************99888899999999****************9997.9****************99886 PP

  == domain 2    score: 97.5 bits;  conditional E-value: 2.1e-30
   TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvt.eapvlv.kGvaraeaekravelldmvGladkadal.....paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpke 240
                  +ld+++l++ +Ge + l G sG Gkst++ ++  +   +eG+++  ge + +++             ++  r++iG v q+  lf   t+ +n++  ap  + k ++ a+ ++ a +++  + + dk d++      +qlsGGqkqr+aiaral  +p +ll+de+tsald e    v + l +l + +d t ++++h++   r+ adr+ f   G++ e G  de+++kp+ 
  MMETSP1061-20121228|6040_1 684 MILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLN-------------VKWYRDQIGYVGQEPTLFD-ATISENIAfGAPSATrKQIESAAKQANAYDFI--MDFPDKFDTViaggsGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTIRN-ADRIAFIGDGRVKEIGSHDELMEKPNG 900
                 589****************************999999999999988777765555.............7889**************7.57788887258987725677777777777764..57888888762222257************************************999************************9997.9************************75 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   1.2e-28   8.6e-27      10     225 ..     400     617 ..     391     656 .. 0.85
   2 !   98.1   0.0   1.9e-30   1.3e-28      19     227 ..     692     902 ..     681     937 .. 0.81

  Alignments for each domain:
  == domain 1    score: 92.1 bits;  conditional E-value: 1.2e-28
   TIGR02142  10 gdfeLd.vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielLg.iehL.......leRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdl 225
                 g++ L+ +++++p+   +a  G sG Gk+++++l+     p eg + ldg  +++    + +   +  +gyv qe  LF+  ++++n+ YG  +++ +e  ++ +k+ +    i+hL       +  + ++LsGG kqR+ai+R l+ +P++Ll+De  +aLD+++   +   Le++ +  +   + ++H l+ + r ad + v+  G +  +g+ ++++ s++ 
  MMETSP1061-20121228|6040_1 400 GHTILNgLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKE----LNVKHLRSMIGYVGQEPALFA-TTIAKNISYGAPNCSHSE-IVKAAKLANAHDfISHLpdgyetqVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTI-RNADIIAVVMGGTIVETGTHDKLMMSETY 617
                 55555437899***999*********************************87654....667788899***********8.589***********9988.4777776655433555522222226677889**************************************************************98.56*******************99987754 PP

  == domain 2    score: 98.1 bits;  conditional E-value: 1.9e-30
   TIGR02142  19 elpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerr..iseek....vielL.giehLleRlp.gkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdlsl 227
                 ++   + ++l G sG Gk++++ li     p+eg+++  g    +  kk+ +   + ++gyv qe +LF   ++ en+ +G  +a+ ++ +  +++++    ++++    + ++   + ++LsGG kqR+ai+RAl+ +Pe+Ll+De  +aLD+++ + +   L++l ++ +  ++ ++H l+ + r adr+  + dGrvk +g+ +e++++++ ++
  MMETSP1061-20121228|6040_1 692 KIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFG----EDVKKLNVKWYRDQIGYVGQEPTLFD-ATISENIAFGAPSATRKQIEsaAKQANaydfIMDFPdKFDTVIAGGSgTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTI-RNADRIAFIGDGRVKEIGSHDELMEKPNGKY 902
                 444458899**************************98666....5668899******************7.69********9877766532112333311114444334777777655168**************************************************************98.56**********************9987553 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.7   0.0   5.6e-28     4e-26      18     219 ..     401     602 ..     387     604 .. 0.86
   2 !   97.9   0.0   1.8e-30   1.3e-28      18     220 ..     683     886 ..     668     887 .. 0.83

  Alignments for each domain:
  == domain 1    score: 89.7 bits;  conditional E-value: 5.6e-28
   TIGR02211  18 ievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPl.liskkskkeake..rakellekv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkl 219
                  ++l+g+s++i +g++va vG sG Gkst++ ll  + +p +G v l+G ++++l+ +   +lr   +G++ q   l+a  t+  n++  +   s+ ++ +a++  +a+++++++  g e ++  k s+lsGG++qr+aiar lv kPk++l de t+ ld+++   + e l+++ ++++ + ++++h l+ ++++d    +  g++
  MMETSP1061-20121228|6040_1 401 HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVK---HLRS-MIGYVGQEPALFA-TTIAKNISYGApNCSHSEIVKAAKlaNAHDFISHLpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTIRNADIIAVVMGGTI 602
                 579**************************************************99876...5664.69*****998876.58999*99754134555555554411567788887557899**********************************************************************9999998777766655 PP

  == domain 2    score: 97.9 bits;  conditional E-value: 1.8e-30
   TIGR02211  18 ievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlli.skkskkeakerakellekvglekrink.....kpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                   +l++ +l+i++ge++++ G sG Gkst++ l+  + +p +G+v+  G++++kl+ +        ++G++ q    l d t+ en+a+ +   ++k++++a+++a++    +++ ++ +        ++lsGG++qr+aiaralv+kP+++l de t+ ld+++ +++ e l +l ++k+ + +v++h l+ ++++dr   + dg+++
  MMETSP1061-20121228|6040_1 683 RMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVK----WYRDQIGYVGQEPT-LFDATISENIAFGAPSaTRKQIESAAKQANAYDFIMDFPDKFDTviaggSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTIRNADRIAFIGDGRVK 886
                 569****************************************************864....44568******765.6799*******855430344445555555544444555555554111124579**********************************************************************999999876 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   1.8e-29   1.3e-27      20     228 ..     403     611 ..     393     621 .. 0.83
   2 !   91.2   0.0   1.9e-28   1.4e-26      20     235 ..     685     901 ..     672     910 .. 0.88

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 1.8e-29
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikr..kvt...ellalv..glsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvsei 228
                  l+ +s+ +p+g+ +  +g sg gkst+++ ++ +  p +g v +dg d+ +l+   + + r  ig + q   l++  t+ +n++      n ++ +i +  k++   ++++ +  g   +     s+lsggqkqr+aiar l  +pk+ll deatsald  +   + e l +i  + + t ++i+h +  +++  d +av+ +g ++e gt  ++
  MMETSP1061-20121228|6040_1 403 ILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELN---VKHLRSMIGYVGQEPALFA-TTIAKNISYGA--PNCSHSEIVKaaKLAnahDFISHLpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTIRN-ADIIAVVMGGTIVETGTHDKL 611
                 68999*******************************************987775...667799********98876.6999**98764..45555555431133300133333222444455556899**************************************************************9976.8**************997665 PP

  == domain 2    score: 91.2 bits;  conditional E-value: 1.9e-28
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpk.ekikrkvtellalvglsdkkdsy.....psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifshpkte 235
                  ld+ +l + +g+ +g+ g sg gkst++  ++ +  p +g+v   g+d+ +l+   +   r qig + q   l+   t+ +n+a+    +++ + e   ++ +    ++ + dk d+       ++lsggqkqr+aiaral  +p +ll deatsald  + + + e l ++    + t ++i+h +  +++  d++a i++g++ e g+  e++ +p+ +
  MMETSP1061-20121228|6040_1 685 ILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLN---VKWYRDQIGYVGQEPTLFD-ATISENIAFGAPSATRKQiESAAKQANAYDFIMDFPDKFDTViaggsGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTIRN-ADRIAFIGDGRVKEIGSHDELMEKPNGK 901
                 58999********************************************98885...667899********98875.69******998777666524455566667778899***998622222468**************************************************************9976.8*********************999876 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.8   0.1   5.1e-27   3.6e-25       3     197 ..     387     584 ..     385     626 .. 0.82
   2 !   95.8   0.0   8.8e-30   6.3e-28       1     203 [.     667     873 ..     667     885 .. 0.83

  Alignments for each domain:
  == domain 1    score: 86.8 bits;  conditional E-value: 5.1e-27
   TIGR00960   3 kfeqvskaykg..aaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalri.....iGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleev..nraGttvlvathd 197
                 +fe+v  +y++  ++   l++++++i+ G+ v +vG+sG Gkst++kl+     p +G +r+ g d+++l+   v  lr  iG v q+  l+   t+ +n+           i + ++ ++    ++    G + +  +   qlsgG++qr+aiar +v kP++ll de t+ ld++  + + e le++   ++ ttv++a   
  MMETSP1061-20121228|6040_1 387 TFEDVRFNYPTrpGH-TILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELN---VKHLRSMIGYVGQEPALFA-TTIAKNISYGAPNcshseIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIisTQQRTTVIIAH-R 584
                 799999999873234.48************************************************98875...7789*********998765.6888888875433000002233333333333444445999*****************************************************983334567777774.3 PP

  == domain 2    score: 95.8 bits;  conditional E-value: 8.8e-30
   TIGR00960   1 mikfeqvskaykga.aelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekv.Glkdkakal.....PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleev.nraGttvlvathdenlves 203
                 +i f+ vs +y++  +++ ld+ ++ki +Ge + l G sG Gkst++ li     p +Gk+ + g+d++kl   +v   r qiG v q+   l d t+ +n+a+    +  k  e   +  +a + +  + dk  ++      +qlsgG++qr+aiara+v+kP++ll de t+ ld+e  r + e l+++ + +  t +v +h  + + +
  MMETSP1061-20121228|6040_1 667 LIVFRSVSFSYPTRpNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKL---NVKWYRDQIGYVGQEPT-LFDATISENIAFGAPSATRKQIESAAKQANAYDFImDFPDKFDTViaggsGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLmESKDHTCVVIAHRLSTIRN 873
                 5899*******98636789*************************************************988...5889**********987.5799********9888777766666666666665426777755432222278**************************************99999988725567888888898777655 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.0     1e-27   7.3e-26       5     185 ..     401     583 ..     395     587 .. 0.88
   2 !   85.3   0.0   1.1e-26   7.6e-25       6     185 ..     684     866 ..     677     871 .. 0.85

  Alignments for each domain:
  == domain 1    score: 88.6 bits;  conditional E-value: 1e-27
   TIGR01166   5 aevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdi..sgleerp...thllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrkl..reeGktvvisth 185
                   +l+gl++++  g+++a++G+ G Gkst+++ l+    P +G v ldG ++  +  ++ +lr  +++v q+p   lfa+++ +++++g  n   se    +++ +a + ++   +g+e +     ++lsgG+k+r+aia +++ +p++lllde t+ ld++ +  + e+l+++  +++ +tv+i+ h
  MMETSP1061-20121228|6040_1 401 HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDI--KELNVKHLRSMIGYVGQEP--ALFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISHlpDGYETQVgdkGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIisTQQRTTVIIA-H 583
                 469**********************************************666..57889999*********99..5********************999999******99986447999986222579********************************************98323445555554.4 PP

  == domain 2    score: 85.3 bits;  conditional E-value: 1.1e-26
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaav.disgleer.....pthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeG.ktvvisth 185
                  +l++ +l++ +ge+++l G  G Gkst++  ++    P++Gkv + Ge+++  + ++   r ++++v q+p   lf a+++e++afg      ++ e  ++  +a + + d  +  +         +lsgG+k+r+aia a++ +p++lllde t+ ld + ++ + e+l+kl e+  +t v+ +h
  MMETSP1061-20121228|6040_1 684 MILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVK--KLNVKWYRDQIGYVGQEP--TLFDATISENIAFGAPSATRKQIESAAKQANAYDFImDFPDKFDTviaggSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKdHTCVVIAH 866
                 4899*********************************************985..8899999*********99..5**************999998888888888888764244333222111114579*********************************************98864155666666 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.4   0.0   3.3e-28   2.3e-26      13     228 ..     400     615 ..     387     623 .. 0.82
   2 !   79.4   0.0   7.6e-25   5.4e-23      13     223 ..     682     893 ..     672     900 .. 0.87

  Alignments for each domain:
  == domain 1    score: 90.4 bits;  conditional E-value: 3.3e-28
   TIGR03873  13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdra...larvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltpe 228
                 g +i++++ ++ PaG+  + +GP G Gkst+++ll     p +G v l+g d+k l+ ++    +  v q+       ++ + +  G  P  s      ++  + ++     l +   +++ d+  s lsGG++qr+ +ar l  +Pk+lllde t  ld ++ l + +++ +++ +++ t+v+  h l+  ++ +d + v+ gG +v +G+  +++  e
  MMETSP1061-20121228|6040_1 400 GHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPAL-FATTIAKNISYGA-PNCSHSEIVKAAKLANAHDFishLPDGYETQVGDK-GSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIIsTQQRTTVIIAHRLST-IRNADIIAVVMGGTIVETGTHDKLMMSE 615
                 789*********************************************************999*******9765.5566666777774.54444444443444444444000444455666665.688*******************************************99984455677777899985.7899***************998877665 PP

  == domain 2    score: 79.4 bits;  conditional E-value: 7.6e-25
   TIGR03873  13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarv...elssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppae 223
                 +r+i+d  +++  +G+  gl G  G Gkst++ l+     p++G+v++ g+d+k l+ +    ++  v q+  +  + ++ + +a+G  P  ++   +s++ ++ +   + +      + +a  + + lsGG++qr+ +aral ++P++lllde t  ld ++   + +++ +l+ ++  t vv  h l+  ++ +d++  ++ Grv   G+  e
  MMETSP1061-20121228|6040_1 682 NRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQE-PTLFDATISENIAFGA-PSATRKQIESAAKQANAYDFIMDFpdkFDTVIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMeSKDHTCVVIAHRLST-IRNADRIAFIGDGRVKEIGSHDE 893
                 799******************************************************************98.578999*********5.77788888887777777666665411134679999***************************************9999999999983456788888899985.7899***********99887766 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.1   1.2e-24   8.5e-23       2     176 ..     405     586 ..     404     611 .. 0.83
   2 !   88.0   0.0     2e-27   1.4e-25       1     201 [.     686     893 ..     686     910 .. 0.80

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 1.2e-24
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdr...mv..vfqnysllpwltvreni.alavdavlrdlskserreiveehielv..glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                 ++++++i  g+ ++++g sg gkst++ l+  +  p +g+v+l+g +i+e   +    m+  v q+ +l+  +t+ +ni + a ++ ++++ k+ + +  ++ i+ +  g ++    + +qlsgg kqr+aiar l  +pk+lllde   ald+ +   +qe l +i+  ++ t+++++h + 
  MMETSP1061-20121228|6040_1 405 NGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHlrsMIgyVGQEPALFA-TTIAKNIsYGAPNCSHSEIVKAAKLANAHDFISHLpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLS 586
                 6789999***************************************9999887651125433557777776.566667615578999999999999998888887653466777778899************************************************************875 PP

  == domain 2    score: 88.0 bits;  conditional E-value: 2e-27
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepg....pdrm.vvfqnysllpwltvrenialavdavlrd.lskserre.iveehielvgl..reaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakigeile 201
                 l++ +l+i +ge i l g sg gkst++ li  +  p +g v   g+++++       d++  v q+ +l+   t+ enia+   +++r+ ++ + +++   +  +++ +   +  a    +qlsgg kqr+aiaral  +p++lllde   ald  +   +qe l k++e ++ t+++++h +  ++  +dr+ ++ +g   +ig   e
  MMETSP1061-20121228|6040_1 686 LDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNvkwyRDQIgYVGQEPTLF-DATISENIAFGAPSATRKqIESAAKQAnAYDFIMDFPDKfdTVIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLS-TIRNADRIAFIGDGRVKEIGSHDE 893
                 57789******************************************999865222245552466666666.589******98776665504444444413344445544311445778899*************************************************************96.6889***************97544 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   1.1e-28   7.9e-27    1215    1459 ..     383     632 ..     369     649 .. 0.92
   2 !   75.3   0.0   6.1e-24   4.4e-22    1228    1482 ..     679     940 ..     668     946 .. 0.78

  Alignments for each domain:
  == domain 1    score: 91.0 bits;  conditional E-value: 1.1e-28
   TIGR01271 1215 ggqmtvkdltaky.teagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpye.qysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafs..nctvilsehrveallecqqflviegssvkqydsiqkllneasllkqalsaadrvklfp 1459
                  +gq+t +d+   y t  g+++l+ ls+ + ag++v ++g +g gkst++  l r+ +  eg +++dg+  + + +++ r  +g + q   +++ t+ kn+   + + s  ei k a+    +  i  +pd  + ++ d g  ls g kq + +ar ++ k killlde ++ ld  +  +++ +l + +s  + t ++  hr+ ++ + + + v+ g ++ +  + +kl+   +++k+ + ++  + ++p
  MMETSP1061-20121228|6040_1  383 EGQLTFEDVRFNYpTRPGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDpLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISYGApNCSHSEIVKAAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIIStqQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMSETYYKKLVDTQGNAAMMP 632 
                  69999****99997889*************************************98737*****************************************865427899****************************************************************************998763345777778************************************99998887777776 PP

  == domain 2    score: 75.3 bits;  conditional E-value: 6.1e-24
   TIGR01271 1228 teagravlqdlsfsveagqrvgllgrtgsgkstllsallrlls.tegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpye.qysdeeiwkvaeevglksvieqfpdkldfvlvdg.gyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqaf..snctvilsehrveallecqqflviegssvkqydsiqkllne.asllkqalsaadrvklfplhrrns.skrkskpkiaalkeeae 1482
                  t   r +l+++ + +  g+++gl g +g gkst++  + r+ +  eg+++  g   + + ++ +r  +g + q   ++  t+  n+   +   + ++i   a++      i +fpdk+d v+  g g  ls g kq + +ar+++ k  illlde ++ ld  + +i++ +l + +   + t ++  hr+ ++ + +++  i + +vk+  s + l+++ + ++k+ + ++ r    +lh + s sk+k k k+    ee e
  MMETSP1061-20121228|6040_1  679 TRPNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDpEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENIAFGApSATRKQIESAAKQANAYDFIMDFPDKFDTVIAGGsGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMesKDHTCVVIAHRLSTIRNADRIAFIGDGRVKEIGSHDELMEKpNGKYKRLVESQARGASTALHGLVSkSKKKKKSKVMEDVEEEE 940 
                  4556788999999999999999999999999999999999876257899999999999999999999999999999999999999876551345677888888889999999999999999887757889999999999999999999999999999999999999999998876522467888888999999999999999999999999999988763568888888888888888887654355555566554444444 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.1   4.5e-23   3.2e-21       3     226 ..     405     622 ..     403     625 .. 0.79
   2 !   74.9   0.0   1.8e-23   1.3e-21       4     225 ..     688     906 ..     685     911 .. 0.79

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 4.5e-23
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrg..reialilqnPrsafnPlltikeqlletl..kaleklskqakelivealeavgLeea.eevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkhettrkLl 226
                 +++++++  gk +a+vG sG Gks++ + +  + d      +G ++ldg ++++l+++     i+++ q+P    +    i++++       +++++ k ak   ++ +  + L+++ e+ +     +lsGG  qR+ ia  l+ ++ +l+ De t++lD ++++ v + le++ ++++ + ++i+h l+ + + ad +av+  G ive+gt ++l+ +  +++ +kL+
  MMETSP1061-20121228|6040_1 405 NGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYD----PLEGCVRLDGIDIKELNVKHlrSMIGYVGQEPALFATT---IAKNISYGApnCSHSEIVKAAKLANAHDF-ISHLPDGyETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTI-RNADIIAVVMGGTIVETGTHDKLMMS--ETYYKKLV 622
                 68999*******************98776666666....789***********996654115799******865444...44444333300234444455552223333.34566652556777899***************************************************************99.67******************999875..45556665 PP

  == domain 2    score: 74.9 bits;  conditional E-value: 1.8e-23
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPlltikeqlletlkaleklskqakel.ivealeavgLeeaeevl.kkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkhettrkL 225
                 + +l++ +g+ ++l G sG Gks++     gl++      +G++   g+++++l  +    +i+++ q+P   f+   + +  +     +++++++ ak+  + + + +    + ++v+      +lsGG  qR+ ia al+ ++ +l+ De t++lD  ++  v + l++l+e+++ + ++i+h l+ + + ad +a + +G++ e g+ +el+++P+ ++ r +
  MMETSP1061-20121228|6040_1 688 KFKLKIYQGETIGLCGISGGGKSTVM----GLIERFYDPEEGKVEYFGEDVKKLnvKWYRDQIGYVGQEPT-LFDATISENIAFGAPSATRKQIESAAKQAnAYDFIMDFPD-KFDTVIaGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTI-RNADRIAFIGDGRVKEIGSHDELMEKPNGKYKRLV 906
                 6789999****************865....5555555567899*999999999844556789********6.5765544333333333333444433332204444444443.345555156789***************************************************************99.67**************************9998754 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.1   6.6e-24   4.8e-22      34     254 ..     397     611 ..     367     629 .. 0.84
   2 !   67.5   0.0   2.6e-21   1.9e-19      31     255 ..     676     895 ..     646     900 .. 0.82

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 6.6e-24
   TIGR00955  34 kkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnG...ekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkkl.aqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254
                 ++p  ++l++ s  +  G+ +A +G+SG GK+T ++ l  r    l++   v l+G   ++++ k++r + +yv q+  ++ t t+  ++ + a    + ++ k  k +  ++ +++  L +  +t +g++g    lSgG+++R+a+a  l+ +P++L++DE Ts LDs s   v ++L+++ +++ +t ++  H  s    ++ d i ++  G +v +G+ +++
  MMETSP1061-20121228|6040_1 397 TRPGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLE-RFYDPLEG--CVRLDGidiKELNVKHLRSMIGYVGQEPALFAT-TIAKNISYGAPNCSHSEIVKAAKLANAHDFISH--LPDGYETQVGDKGS--QLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIiSTQQRTTVIIAHRLST--IRNADIIAVVMGGTIVETGTHDKL 611
                 458899****************************99886.55555666..67888822245677999********99988876.888899*****999*****************96..78********8886..9************************************99999**99646777777777888664..577888888888888888887776 PP

  == domain 2    score: 67.5 bits;  conditional E-value: 2.6e-21
   TIGR00955  31 larkkpekellknvsGvaksGellAvlGsSGaGKtTLlnala.frsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgk.tviltiHQPsselfelfdkiillaeGrvvylGspeeav 255
                    ++p++ +l +   ++++Ge + + G SG GK+T +  +  f+++++ kv      + +k++ k  r   +yv q+  ++   t++e++ f a    ++++ +  k++   + + +    +  dt+i   g    lSgG+++R+a+a  l+++P +L++DE Ts LD  s   v ++L kl ++   t ++  H  s +  ++ d+i ++ +Grv   Gs +e++
  MMETSP1061-20121228|6040_1 676 SYPTRPNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIErFYDPEEGKV-EYFGEDVKKLNVKWYRDQIGYVGQEPTLFDA-TISENIAFGAPSATRKQIESAAKQANAYDFIMD--FPDKFDTVIA-GGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDhTCVVIAHRLS-T-IRNADRIAFIGDGRVKEIGSHDELM 895
                 4456799999999999***********************9972455555454.3355666788889999********9988875.9****************************9965..6788999998.677789*********************************************99876515666666655.4.5889**********99888887765 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   2.1e-22   1.5e-20      10     185 ..     398     583 ..     392     595 .. 0.77
   2 !   68.5   0.0   1.7e-21   1.3e-19       9     178 ..     679     858 ..     674     878 .. 0.80

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 2.1e-22
   TIGR01189  10 RgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqr.delaeellylgHldglKaeLsalEnLkfyaallqseqk....tveealekv.gLsgledlpv....aqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargG.ivllath 185
                 R ++++l+gls+++ aG++++ +Gp G GK+t++++l     p +G v+l++ +++e + ++l+  + y+g +++l a+ +++ n+++ a  +++++     ++ +a + +  L +  ++ v    +qLs Gqk+R+a+ar+l+ k ++ +LDE t alD ++  +++e+l++ ++++  ++++ +h
  MMETSP1061-20121228|6040_1 398 RPGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNvKHLRSMIGYVGQEPALFAT-TIAKNISYGAPNCSHSEIvkaaKLANAHDFIsHLPDGYETQVgdkgSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQrTTVIIAH 583
                 78899*************************************************99987245667789********765.8999****9998885542211122222222212333333333222279**************************************999999987654313344444 PP

  == domain 2    score: 68.5 bits;  conditional E-value: 1.7e-21
   TIGR01189   9 eRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrde.laeellylgHldglKaeLsalEnLkfyaallqseqktveealek.......vgLsgledlpva.....qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargG 178
                 +R +r++l + ++++  Ge++ + G  G GK+t++ ++     pe+G+ve+ ++++++ + + +++++ y+g +++l +  ++ En+ f a   + +q  +e a ++       ++  +  d+++a     qLs Gqk+R+a+ar l++k  + +LDE t alD+e+ ++++e+l++ ++   
  MMETSP1061-20121228|6040_1 679 TRPNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKwYRDQIGYVGQEPTLFD-ATISENIAFGAPSATRKQ--IESAAKQanaydfiMDFPDKFDTVIAggsgtQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKD 858
                 5889***************************************************999876516789*********976.599******998887555..33333330011222555555555553344449*****************************************9998876544 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   2.5e-21   1.8e-19      14     231 ..     400     613 ..     385     620 .. 0.85
   2 !   67.7   0.0   3.6e-21   2.6e-19      18     233 ..     686     898 ..     680     902 .. 0.82

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 2.5e-21
   TIGR03411  14 gfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel..akersvvvvehDmefvrelaekvtvlheGkvlaeGsldevqa 231
                 g + ln ls+++ +g+  + +Gp G Gk+t++ ++     p eG v ++g d+++l+ +++ r+ ig   q+p++f   t+++n++  + +  s  +++ a   +++++ i+++ +  g e+++  k ++Ls Gqkq++ i+ +lv +pk+lllDe ++ + ++ +  + e l+++  +++r+ v++ h ++ +r+ a+ ++v+  G+++  G+ d++  
  MMETSP1061-20121228|6040_1 400 GHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHL-RSMIGYVGQEPALFA-TTIAKNISYGAPNC-SHSEIVKAAKLANAHDFISHLPD--GYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIisTQQRTTVIIAHRLSTIRN-ADIIAVVMGGTIVETGTHDKLMM 613
                 77889**************************************************999876.666***********7.69999988776543.33444444444555666666655..67899999************************************999999999999994446899***********98.57899999*********999865 PP

  == domain 2    score: 67.7 bits;  conditional E-value: 3.6e-21
   TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarls.keekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel..akersvvvvehDmefvrelaekvtvlheGkvlaeGsldevqade 233
                 l++++l++ +ge   + G  G Gk+t++ +i     p+eG+v + g+d++kl+  +  r  ig   q+p++f+  t+ en+   + +     +++ + ++ +++ + i +  +    +  a    ++Ls Gqkq++ i+  lv++p++lllDe ++ + +e ++ + e l +l  +k+++ vv+ h ++ +r+ a++++ + +G+v   Gs de+ + +
  MMETSP1061-20121228|6040_1 686 LDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNV-KWYRDQIGYVGQEPTLFD-ATISENIAFGAPSAT--RKQIESAAKqANAYDFIMDFPDKFD-TVIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLmeSKDHTCVVIAHRLSTIRN-ADRIAFIGDGRVKEIGSHDELMEKP 898
                 78999********************************************99986.567899***********7.69****988665443..3333222220223333433333332.2344566789********************************99999999***999344689************98.67899*******9999999987765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.1   6.3e-22   4.5e-20      16     224 ..     402     616 ..     389     644 .. 0.83
   2 !   62.2   0.0   1.6e-19   1.2e-17      15     223 ..     683     898 ..     667     957 .. 0.77

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 6.3e-22
   TIGR03522  16 kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlk.nslevrkniGylPehnPlyldlyvre..ylefsaalyklkgrklkkrveelielv..GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei..akdktvilsthimqevealcdrviiinkGkivadkkleelkaaek 224
                  +l+ +s ++  G+ v f+GP G Gkst++k+l  +  +  G+v ++g+d+ + n ++ r +iGy+ +   l+     ++  y + +++  ++ + ++  + +++i +   G +++   k ++ls G +qr+ +a+ l+ +Pk+l+lde t+ ld    + ++e +++i  ++++t ++ +h +  ++   d + ++  G iv   + ++l + e+
  MMETSP1061-20121228|6040_1 402 TILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKElNVKHLRSMIGYVGQEPALFATTIAKNisYGAPNCSHSEIVKAAKLANAHDFISHLpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIisTQQRTTVIIAHRLSTIRN-ADIIAVVMGGTIVETGTHDKLMMSET 616
                 57999**********************************************9846678999*******9999999887762244455555555555566666777877544777777899************************************999999999999855577888888999888876.57777888999999999999987776 PP

  == domain 2    score: 62.2 bits;  conditional E-value: 1.6e-19
   TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknsle.vrkniGylPehnPlyldlyvreylefsa...alyklkgrklkkrveelielvGlkaeqhkki......galskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei..akdktvilsthimqevealcdrviiinkGkivadkkleelkaae 223
                 + +ld+  +++ +Ge +G+ G  G Gkst+m ++  +  ++ G v+  gedv k +++  r +iGy+ + +P   d  + e ++f a   +  ++++ +++ +  ++i        ++  +      ++ls G +qr+ +a+al+ +P++l+lde t+ ld +    ++e + ++  +kd t ++ +h +  ++   dr+  i  G++    + +el ++ 
  MMETSP1061-20121228|6040_1 683 RMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKwYRDQIGYVGQ-EPTLFDATISENIAFGApsaTRKQIESAAKQANAYDFIMDFPD---KFDTViaggsgTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLmeSKDHTCVVIAHRLSTIRN-ADRIAFIGDGRVKEIGSHDELMEKP 898
                 5689************************************************99666526889***986.57777999*******7611144556655555555566655544...4433322232269********************************9887777777776634689999999999999886.6999999999987777777775544 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.4   0.1   8.7e-21   6.3e-19      13     211 ..     401     611 ..     390     623 .. 0.73
   2 !   62.1   0.0   1.8e-19   1.3e-17      12     204 ..     682     887 ..     676     898 .. 0.77

  Alignments for each domain:
  == domain 1    score: 66.4 bits;  conditional E-value: 8.7e-21
   TIGR03740  13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldg...rewtrkdlkk.iGsliesPalyenltarenlkvrt....lllglpesrieevlkiv.....dlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldP...lGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkyekkidkd 211
                 ++++n +s+ ++  +  +++Gp G Gkst++kll  +  + +G + ldg   +e++ k+l++ iG + ++Pal+    a+ n+   +      + ++ +++ +  + +     + e++   k +q+s G kqr+ ia  l+ kPk+l+lde t  ld    l +qe  e i s +++ +tvi+ +h ls +++ ad i ++  G++   +  dk 
  MMETSP1061-20121228|6040_1 401 HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGidiKELNVKHLRSmIGYVGQEPALFATTIAK-NISYGApncsHSEIVKAAKLANAHDFIshlpdGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSqseLVVQEALENIIS-TQQRTTVII-AHRLSTIRN-ADIIAVVMGGTIVETGTHDKL 611
                 5799******************************************999333445556665436777799***9876665.5544331001223344444444333331112224455567899*********************************8333557775555554.455566666.79*****86.9*********99877766665 PP

  == domain 2    score: 62.1 bits;  conditional E-value: 1.8e-19
   TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlk....kiGsliesPalyenltarenlkv...rtlllglpes..r...ieevlkivdl..entekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreli.ksfpekGitvilsshilsevelladhiGiiseGklky 204
                 +++++++ +lk+ + +  gl G+ G Gkst++ l+  +  +++G++ + g+++ + ++k    +iG + ++P+l++  t  en+      ++ ++++++  +    + +++  d   + +     +q+s G kqr+ ia al++kP++l+lde t  ld    + ++e + k +++k  t ++ +h ls +++ ad i +i +G++k 
  MMETSP1061-20121228|6040_1 682 NRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKwyrdQIGYVGQEPTLFDA-TISENIAFgapSATRKQIESAakQanaYDFIMDFPDKfdTVIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALdKLMESKDHTCVVIAHRLSTIRN-ADRIAFIGDGRVKE 887
                 6899******************************************998877776665433348**********975.7889998722223444444321120012233333333112234456789********************************9988888876624567789999999*******86.9*********9875 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   1.5e-18   1.1e-16      23     208 ..     403     584 ..     398     598 .. 0.78
   2 !   68.0   0.0   2.4e-21   1.7e-19      22     208 ..     684     867 ..     676     879 .. 0.84

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 1.5e-18
   TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepll..elGvereearakakellarlnip.erLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeak.argaaligifhd 208
                 +l+ +s+++ aG+ va+ G+sG Gkst++k l + Y p  g +++      +    ++e +v ++R + igyv q         a ++   +    +  + +++  a+a++++++l    e       +  sGG kqR+ iar l+ +  iLLLde t++Ld++   vv e ++++  ++  + + i h 
  MMETSP1061-20121228|6040_1 403 ILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDG----I---DIKELNVKHLR-SMIGYVGQEPALFATTIAKNISYGAPNcsHSEIVKAAKLANAHDFISHLPDGyETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIIsTQQRTTVIIAHR 584
                 678999*********************************99987755....4...67888999999.99******8877777777777654433003344445555678899999954314444556699*****************8889********************9998641344455556664 PP

  == domain 2    score: 68.0 bits;  conditional E-value: 2.4e-21
   TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWsl....aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeaka.rgaaligifhd 208
                  +l++ +l++ +Ge + l G sG Gkst++  + + Y pe g++ +   ge v     ++ + ++  r +igyv q         + +++  +  ++  + e+a+++a+++   ++ p++  ++    + +  sGG kqR+ iaral+++  iLLLde t++Ld+   ++v e ++++ + +  + + i h 
  MMETSP1061-20121228|6040_1 684 MILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYF--GEDV-----KKLN-VKWYRDQIGYVGQEPTLFDATISENIAFGAPSATRKQIESAAKQANAYDFIMDFPDKFDTViaggSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMEsKDHTCVVIAHR 867
                 578899************************************98775..5556.....2233.455679*******9999999999999988888888899999999999999999****9877333346789****************8889********************9998754155677778775 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   4.5e-18   3.2e-16      17     223 ..     401     612 ..     388     631 .. 0.82
   2 !   70.0   0.0     5e-22   3.6e-20      16     225 ..     682     897 ..     667     915 .. 0.81

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 4.5e-18
   TIGR01288  17 kvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvp.ararlarakigvvpqfdnldreftvrenllvfgryfglstreieev.ipsllefa.rl....eskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrslla.rgktilltthlmeeaerlcdrlcvleagrkiaegrpdali 223
                 + ++n ls+ i ag+   ++gp g gkst+ +l+  +  p eg + + g ++   +++  r+ ig v q  +l    t+ +n + +g     ++  ++++ + +  +f   l    e++   + ++lsgg k+r+++ar l+  p++l+lde t+ ld ++  ++ e l  +++ + +t ++ +h +    r  d + v+  g+ +  g  d l+
  MMETSP1061-20121228|6040_1 401 HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKeLNVKHLRSMIGYVGQEPALFA-TTIAKN-ISYGAPNCSHSEIVKAAkLANAHDFIsHLpdgyETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIIStQQRTTVIIAHRLST-IRNADIIAVVMGGTIVETGTHDKLM 612
                 5789*****************************************9988776516899***********999965.466666.5799988877777765536777888523422226666667799********************************************9987256788888998865.5889999999888877777766664 PP

  == domain 2    score: 70.0 bits;  conditional E-value: 5e-22
   TIGR01288  16 dkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfglstreieevips..llefa.rleskadvrva.....dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsll.argktilltthlmeeaerlcdrlcvleagrkiaegrpdalide 225
                 ++++++++ + i +ge +gl g  g gkst+  l+  +  p+egk+  +ge+v   +++  r +ig v q  +l  + t+ en+  fg     + ++ie++  +    +f   +  k d+ +a     +lsgg k+r+++aral++ p++l+lde t+ ld  +  ++ e l  l+ ++ +t ++ +h +    r  dr+  +  gr    g  d l+++
  MMETSP1061-20121228|6040_1 682 NRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKlNVKWYRDQIGYVGQEPTL-FDATISENI-AFGAPSA-TRKQIESAAKQanAYDFImDFPDKFDTVIAggsgtQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMeSKDHTCVVIAHRLST-IRNADRIAFIGDGRVKEIGSHDELMEK 897
                 689************************************************99753899***********9999.57899**97.6786543.445666655431144543134556666554333339*******************************************99984578899999999875.5899********998888888877775 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.4   3.2e-21   2.3e-19      13     230 ..     401     609 ..     397     620 .. 0.78
   2 !   58.2   0.1   2.4e-18   1.7e-16      12     230 ..     682     892 ..     679     904 .. 0.78

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 3.2e-21
   TIGR01978  13 keiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneG..fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdve 230
                 ++iL+gl++++ +G+++a +Gp G Gkst++k l   + y   +G ++l+g d+ el+v+       ++  q p   +   +k++   a n  ++    e +++++     +++  + +l+  + +   ++G   sGG k+r  i ++++ +Pk+ +LDe+ s lD  +  +v e ++++ ++ +++++ii+h  rl    + d + v++ G+iv++G  +
  MMETSP1061-20121228|6040_1 401 HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLE--RFYDPLEGCVRLDGIDIKELNVKHLRSMIGYV-GQEPALFATTIAKNISYGAPNCSHS----EIVKAAKL---ANAHDFISHLPDGYETQVGDKGsqLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTqQRTTVIIAH--RLSTIRNADIIAVVMGGTIVETGTHD 609
                 57******************************995..678889****************9854433355.5888888877777777777777663....33333332...2222222233333333333333228******************************************99877658999***99..56666689***************865 PP

  == domain 2    score: 58.2 bits;  conditional E-value: 2.4e-18
   TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkarge..eeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvhvlldGrivksGdve 230
                 ++ iL++++l++ +Ge+  + G  G Gkst++  +   + y  ++G++++ g+d+ +l+v+    +  ++  q p+       +++   a  a+rk+ ++  ++ ++ +f   + +k +      +++     +  sGG k+r  i + ++ +P++ +LDe+ s lD ++ +iv e ++kl e+ ++++++i+h  rl    + d +  + dGr+ + G+ +
  MMETSP1061-20121228|6040_1 682 NRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIE--RFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYV-GQEPTLFDATISENIAFGAPSATRKQIESaaKQANAYDFIMDFPDKFD------TVIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESkDHTCVVIAH--RLSTIRNADRIAFIGDGRVKEIGSHD 892
                 578******************************996..567889****************9654444455.588887777666666666777776443330033344444444444443......34455556779********************************************99885888999999..56666689***********9999764 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   3.7e-18   2.7e-16      40     274 ..     404     631 ..     392     666 .. 0.81
   2 !   66.2   0.0   7.7e-21   5.6e-19      41     262 ..     687     904 ..     682     962 .. 0.84

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 3.7e-18
   TIGR03415  40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelv.glaeWadk....kvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaneyvadfvahtnPlnvl 274
                  ++ s+d+  G  + ++G sG Gks++++ + ++     G v++      +d+ +++ ++lr++    +  v q+ al+   t+++n+++G      ++  +  + ++  +++  l +  ++    k  +lsGG +qr+ +ar +  + +ill+de  sald      +q+ l ++ ++ ++t v ++h l   ++  + ia++ gG iv +gt ++++++  + y +++v      +++
  MMETSP1061-20121228|6040_1 404 LNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLD----GIDIKELNVKHLRSM----IGYVGQEPALFA-TTIAKNISYGAPNCSHSEIVKAAKLANAHDFIsHLPDGYETqvgdKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLS-TIRNADIIAVVMGGTIVETGTHDKLMMS--ETYYKKLVDTQGNAAMM 631
                 57889*****************************99999999874....578888887777765....99*******996.79********988777777666666666665524555544401115678*************************************************************7.68999****************9998875..56777777665555555 PP

  == domain 2    score: 66.2 bits;  conditional E-value: 7.7e-21
   TIGR03415  41 adasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelv.glaeWadk.....kvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaneyva 262
                 ++  l++ +Ge + l G+sG Gks+++  + ++     Gkv+   e    dv k++ +  r    +++  v q+ +l+   t++en+afG   +   + e   + ++  +++ ++ +  d+        +lsGG +qr+ +ara+  + +ill+de  sald      +q+ l +l +   +t v ++h l   ++  +ria + +Gr+  +g+ +e++ kP+ +y +
  MMETSP1061-20121228|6040_1 687 DKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGE----DVKKLNVKWYR----DQIGYVGQEPTLFD-ATISENIAFGAPSATRKQIESAAKQANAYDFImDFPDKFDTviaggSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLS-TIRNADRIAFIGDGRVKEIGSHDELMEKPNGKYKR 904
                 57789****************************9999999987665....45566665555....69*******99986.79*********999999888877777776654255444443111114469*************************************************************7.6999****************************965 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.1   3.4e-17   2.4e-15     301     518 ..     405     614 ..     397     625 .. 0.81
   2 !   69.4   0.2   6.5e-22   4.7e-20     300     518 ..     686     897 ..     652     908 .. 0.87

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 3.4e-17
   TIGR03269 301 dnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdelak.rkavivlkavG.fdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeivee 518
                 +++s+++  ++    vG sG Gk+t+ k+l    +p +G v  r+  + +d+ + +v+     +  iG + qe al++  t+ +n++        +e+ k  k   +   +  + + + +++ dk  ++ls G++ r+a+a+vl+ +p+i++lde t ++d  ++  v+e++ +     ++t vi++h +  +++  d +a++  G iv++G  ++++ +
  MMETSP1061-20121228|6040_1 405 NGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCV--RL--DGIDIKELNVK---HLRSMIGYVGQEPALFA-TTIAKNISYGAPNCSHSEIVKaAKLANAHDFIShLPDGYETQVGDK-GSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTIRN-ADIIAVVMGGTIVETGTHDKLMMS 614
                 67889999999999************************965..54..67999988855...4667899999******8.5788888765444444444330333333333330345555666665.789***************************************************************998.6999************99988765 PP

  == domain 2    score: 69.4 bits;  conditional E-value: 6.5e-22
   TIGR03269 300 vdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteai..glelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeivee 518
                 +d+ +l+++++e  Gl G+sG Gk+t+  ++    +p +G+ve   G++   +  k        +  iG + qe +l+   t+ en++     +     e a ++a     ++ f ++  + i      +ls G++ r+a+a+ l+k+p i++lde t ++d  +++ v+e++ k  e  ++t v+++h +  +++  dr+a++ dG++ +iG+ +e++e+
  MMETSP1061-20121228|6040_1 686 LDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEY-FGEDVKKLNVK------WYRDQIGYVGQEPTLFD-ATISENIAFGApsATRKQIESAAKQANAYDFIMDFPDKFDTVIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTIRN-ADRIAFIGDGRVKEIGSHDELMEK 897
                 7999**************************************96.68875443333......3456799999******6.699999975441133445577888888888899********************************************************************************998.7******************99876 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.1   1.2e-16   8.6e-15      15     228 ..     402     611 ..     397     634 .. 0.82
   2 !   70.0   0.0   4.2e-22     3e-20      17     219 ..     686     885 ..     681     898 .. 0.87

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 1.2e-16
   TIGR02633  15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkld.asnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdl.kakgvacvyishkleevkavsdtisvirdGqhvatkdaeal 228
                 + l+++++ + aG+ v++ G  G Gkst++k+l   y     +G +  +g ++k  ++++  r  i  + qe +l    ++++ni  G     +  +++ +a +  a++++ +l    +++v    s+l +Gq+q + ia+ l  + ++l+lde +++l  +   ++ + + ++  +++ + v i+h+l  ++  +d i+v+  G  v t   ++l
  MMETSP1061-20121228|6040_1 402 TILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYD--PLEGCVRLDGIDIKELNVKHL-RSMIGYVGQEPALFA-TTIAKNISYGAPNCSHSEIVK-AAKLANAHDFISHLPDGyETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIiSTQQRTTVIIAHRLSTIRN-ADIIAVVMGGTIVETGTHDKL 611
                 6799*******************************996..689***************986.6789********986.69********98877775555.566678999999986441344555678999*****************************8876555555444431445557889*******997.8*********99977554443 PP

  == domain 2    score: 70.0 bits;  conditional E-value: 4.2e-22
   TIGR02633  17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrel..kldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdl.kakgvacvyishkleevkavsdtisvirdGqh 219
                 ld+ +lk+  Ge ++lcG  G Gkst+m ++   y     +G++ + ge++k  +++   r  i  + qe tl  + ++ eni +G   + +  +++ +a    a +++ +   k d++      ++l +Gq+q + ia+al k+  +l+lde +++l ++  +i+ + +  l + k+ +cv i+h+l  ++  +d+i+ i dG+ 
  MMETSP1061-20121228|6040_1 686 LDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDP--EEGKVEYFGEDVKKLNVKW-YRDQIGYVGQEPTLF-DATISENIAFGAPSATRK-QIESAAKQANAYDFIMDFpdKFDTVIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLmESKDHTCVVIAHRLSTIRN-ADRIAFIGDGRV 885
                 89999****************************9975..58**************986.57789********97.679********9877776.68888888888888888744677777777789********************************998888888877655268999***********997.8*********74 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.2   1.1e-17   7.6e-16       3     206 ..     411     618 ..     409     631 .. 0.77
   2 !   58.7   0.0   1.9e-18   1.4e-16       2     198 ..     692     893 ..     691     903 .. 0.75

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 1.1e-17
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagks.....srkgrreiGyvpqrhe.fawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeel.agegtailmtthdlaeavatcdrvvllngrvvadgapdqlqdaalwk 206
                 + +G+ ++++Gp G Gk+t+++ +  +  + +G v+++g        ++ r+ iGyv q    fa     +++    +       +++ +k a+     + l     t++ d+   +lsGGq+qr+ +ar l  kp++lllde  + ld  s+  + e +e++ ++++++ ++ +h l+   ++    v++ g++v +g+ d+l  ++ + 
  MMETSP1061-20121228|6040_1 411 IPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDikelnVKHLRSMIGYVGQEPAlFATTIAKNISYGAPNCSHS--EIVKAAKLANAHDFISHLPDGYETQVGDKG-SQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIiSTQQRTTVIIAHRLSTIRNADIIAVVMGGTIVETGTHDKLMMSETYY 618
                 668999******************************99965111113456788******86426666666655555444433..334444444444444456666667777765.69***********************************999999998752778899999*****98777777778999*********9998777654 PP

  == domain 2    score: 58.7 bits;  conditional E-value: 1.9e-18
   TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrk.....grreiGyvpqrhefawdfpidveqtvlsGra..gli.GllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelag.egtailmtthdlaeavatcdrvvll.ngrvvadgapdq 198
                 ++ +Ge +gl G  G Gk+t++  i  +  +++G+v+  g+  +k      r +iGyv q     +d  i+ + +  +  a  ++i    ++++  df+   d  ++ + t +a  +  +lsGGq+qr+ +aral  kp++lllde  + ld+ s+  + e + +l + ++++ ++ +h l+ ++  +dr+ ++ +grv   g+ d+
  MMETSP1061-20121228|6040_1 692 KIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKlnvkwYRDQIGYVGQEPT-LFDATISENIAFGAPSAtrKQIeSAAKQANAYDFI--MDFPDKFD-TVIAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMEsKDHTCVVIAHRLS-TIRNADRIAFIgDGRVKEIGSHDE 893
                 6789********************************998877665222113568******865.47888876555433333003330334444444554..44444443.457888889********************************************998752689999999*997.578899998773466655555555 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.3e-05   0.00092     335     381 ..     401     447 ..     383     484 .. 0.87
   2 !   34.0   0.0   3.6e-11   2.6e-09     160     216 ..     523     583 ..     490     598 .. 0.81
   3 !   23.6   0.0   5.2e-08   3.8e-06      10      95 ..     675     770 ..     667     802 .. 0.65
   4 !   35.4   0.0   1.4e-11   9.8e-10     160     216 ..     806     866 ..     801     885 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.3e-05
   TIGR03719 335 klliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381
                 +++++ ls+++p+g  v  +Gp G Gkst++kl+    +p +G +++
  MMETSP1061-20121228|6040_1 401 HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRL 447
                 468999****************************9999999998886 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 3.6e-11
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaes...v.aWlekflkeykGtvvavth 216
                 ++lsGG+k+r+a++r+l+ kP +lllde t  ld++s   v + le+ ++  + t v+++h
  MMETSP1061-20121228|6040_1 523 SQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSelvVqEALENIISTQQRTTVIIAH 583
                 78*********************************99332123566666667778888887 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 5.2e-08
   TIGR03719  10 vskvvppkkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdk......efeGealaaegik.....vGyleqePkldeektvrenveegvae 95 
                  s  + p++ il++ +l  ++g  iG+ G+ G Gkst++ ++           e+ Ge +++ ++k     +Gy+ qeP+l +  t+ en++ g  +
  MMETSP1061-20121228|6040_1 675 FSYPTRPNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDpeegkvEYFGEDVKKLNVKwyrdqIGYVGQEPTLFD-ATISENIAFGAPS 770
                 45556678888888888888888888888888888888888776533111122566666666655333333888888888854.5677777666544 PP

  == domain 4    score: 35.4 bits;  conditional E-value: 1.4e-11
   TIGR03719 160 eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekfl....keykGtvvavth 216
                 ++lsGG+k+r+a++r l++kP++lllde t  ld es   +++ l    ++ + t v+++h
  MMETSP1061-20121228|6040_1 806 TQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALdklmESKDHTCVVIAH 866
                 68**********************************9776655550000555667777777 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       4.9   3.5e+02     195     251 ..     175     231 ..     127     244 .. 0.73
   2 !   44.8   0.0     2e-14   1.4e-12     328     549 ..     377     604 ..     358     608 .. 0.82
   3 !   57.8   0.0   2.3e-18   1.6e-16     331     547 ..     662     885 ..     653     890 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 4.9
   TIGR01194 195 alvsGlke.lklnrirrlsfarsaisesavrvadlniieilifilaktvGslllsllv 251
                 + vsG+k  l ln i r+        e a ++a   +i ++ f++   +Gs+l++ ++
  MMETSP1061-20121228|6040_1 175 STVSGIKTvLSLNAISRMVSKYNSATEDAFKIATKPLI-RQGFTAGMMLGSFLIMYII 231
                 56788886478898866666667888999999888777.5678888888887776655 PP

  == domain 2    score: 44.8 bits;  conditional E-value: 2e-14
   TIGR01194 328 ldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdek............kqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvk 549
                 l++    + l + dvr++y+   +     l  + + i  G+ v  vG  G Gkst++kll  +y p eG + ldG  + +      r +   v  +  lf   +  +              k a l +a+ ++s+l      +v d +    ++ls Gq++r+a+    + +  +lllde ++  d     v  e l   +  + +t ++i+h     + ad +  +  G++v+
  MMETSP1061-20121228|6040_1 377 LQPTDVEGQLTFEDVRFNYPTRPGHT--ILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIKELNVKHLRSMIGYVGQEPALFATTIAKNISygapncshseivKAAKLANAHDFISHLPDGYETQVGDKG----SQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIISTQQRTTVIIAHRLSTIRNADIIAVVMGGTIVE 604
                 566667788999*******9988865..577889999***************************************************999999999999998875433111111111111445566666666666655555555555....46***********999999999**************9999999999999*********************999999999986 PP

  == domain 3    score: 57.8 bits;  conditional E-value: 2.3e-18
   TIGR01194 331 dksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpd..........ekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkv 547
                 + ++  + ++ v +sy+     + + l   +l+i +Ge + + G  G Gkst++ l+  +y p+eG++   Ge v +     yrd    v  +  lfd  +  +          ++ +++ +qa+ y   +++ dk +    + s  t+ls Gq++r+a+  a +++  +lllde ++  d    r+  e l   +  +  t +vi+h     + adr+  + dG+v
  MMETSP1061-20121228|6040_1 662 EDAMPLIVFRSVSFSYPTR--PNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKKLNVKWYRDQIGYVGQEPTLFDATISENiafgapsatrKQIESAAKQANAYDFIMDFPDKFDTVIAGGS-GTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMESKDHTCVVIAHRLSTIRNADRIAFIGDGRV 885
                 5555666777888887654..567889999************************************************************9999999999874322222222112224567899*************98888888.89****************************************9999999999**************************987 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   3.7e-15   2.6e-13      24     235 ..     411     622 ..     391     625 .. 0.74
   2 !   46.7   0.0     8e-15   5.7e-13      24     234 ..     693     906 ..     666     910 .. 0.78

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 3.7e-15
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnpr....GlrmevsaGa.nigerllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll...llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGlt.rvlpkhpytqllv 235
                 +  G+ ++ vG sG Gkst++k l     + +G v+ +  +    + +l+    +  lr+  G v q+p+     + +++s Ga n +   ++  a +  + ++  + l +    +   k +++sGG +qr+ iar+lv +p+++++ e t  l s q+ l+    l +++   + +++i++h l+ +r     + v+  G +ve+G   +++  + y + lv
  MMETSP1061-20121228|6040_1 411 IPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGID----IKELN---VK-HLRSMIGYVGQEPAlfatTIAKNISYGApNCSHSEIVK-AAKLANAHDFISHLPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLdEATSALDS-QSELVvqeALENIISTQQRTTVIIAHrLSTIRNAD-IIAVVMGGTIVETGTHdKLMMSETYYKKLV 622
                 567999*****************************987665....44444...44.457889******97444467788999984555555544.54555555554444443333334499*************************9778877765.6666624456677888888888899989*999765.5555555*******9867777777766666 PP

  == domain 2    score: 46.7 bits;  conditional E-value: 8e-15
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevs....aGanigerllavgarhyGkiraaak.wlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrvvesGltrvl...pkhpytqll 234
                 +y Ge +g+ G sG Gkst++  +     +++G+v+y   +    + +l+     +  r + G v q+p  +  ++s     Ga  + r  +  a +  +  +    + +k +   a    +++sGG +qr+ iar+lv +p ++++ e t  l     r++   l +l+   + + ++++h l+ +r  a+r+  +  Grv e G    l   p+  y +l+
  MMETSP1061-20121228|6040_1 693 IYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGED----VKKLNV----KWYRDQIGYVGQEPTLFDATISeniaFGAPSATRKQIESAAKQANAYDFIMdFPDKFDTVIAGGSGTQLSGGQKQRIAIARALVKKPEILLLdEATSALDNESERIVqeALDKLMESKDHTCVVIAHrLSTIRN-ADRIAFIGDGRVKEIGSHDELmekPNGKYKRLV 906
                 89***********************************9877....555543....3567999*******8665555511115776667766665544444444333356666666666699***********************9999******99999999888999**9999999999998999995.88**************98555366666677665 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.0   6.9e-18     5e-16     449     646 ..     382     583 ..     335     590 .. 0.80
   2 !   36.6   0.0   5.5e-12     4e-10     439     643 ..     636     871 ..     610     884 .. 0.67

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 6.9e-18
   TIGR00954 449 qdngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedller.eggwd.avqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrksLwkyH 646
                  + ++ fe++    P   g+ +++ Ls++++ G+ +  +GP G GKs + ++l  ++ P+ g           l  k  ++ + yv q P +   t+   i Y          + s +++++  +  + +d + +   g++  v d    LsgG+kqRia+AR++  kPk  +LDE+tsA+  + E  + e++     +++s  +r++++  H
  MMETSP1061-20121228|6040_1 382 VEGQLTFEDVRFNYPtrPGHTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYdPLEGcvrldgidikELNVKHLRSMIGYVGQEPALFATTIAKNISYGAP-------NCSHSEIVKAAKLANAHDFISHlPDGYEtQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALE----NIISTQQRTTVIIAH 583
                 5567889999999896679************************************9878888*****99996666777889999*******************654.......3555566666666666665554245665269999*********************************98887765544444....455666666555444 PP

  == domain 2    score: 36.6 bits;  conditional E-value: 5.5e-12
   TIGR00954 439 lvagrgkveaqdngikfeniplvtP....................egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelW.Pvyg..........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqd..WkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklye....lakevgitllsvshrksLw 643
                  v+  g++ +++++i fe++p                         + +++++ ++++ +G+ + ++G  G GKs ++ ++  ++ P  g           l  k  + ++ yv q P +   t+ + i +   s   k+ +   k+ +        + +++    +d+v        LsgG+kqRia+AR +  kP+  +LDE+tsA+  + E  + e    l+ +++ t + ++hr s +
  MMETSP1061-20121228|6040_1 636 SVPNLGQLAKTESQIGFEKVPERLAkedamplivfrsvsfsyptrPNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYdPEEGkveyfgedvkKLNVKWYRDQIGYVGQEPTLFDATISENIAFGAPSATRKQIESAAKQAN------AYDFIMDFPDKFDTVIAggSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEaldkLMESKDHTCVVIAHRLSTI 871
                 45556666666666666666643332233223333444444446566777777777777******************999999984555599999887755555667889999999999999999999998665554444433333333......33445555555665543113468*******************************999876554400004555667777777776655 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0     5e-14   3.6e-12     761     953 ..     387     575 ..     308     591 .. 0.74
   2 !   46.4   0.0   3.5e-15   2.5e-13     728     952 ..     638     857 ..     603     885 .. 0.76

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 5e-14
   TIGR00956 761 ewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvt..tGvit.egdrlvngrkldssFqR.siGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGq 953
                 ++ d+ ++ + + +  ++L+ ++  +  Gk  A +G sG Gk t++  L    +   G +  +g   ++ ++l+    R  iGYv q+   l  +t+   + + A     +e+ k+ k     + i+   l +  +  vG  G+ L+  q++r++i+  Lv kPk +l lDe ts LDsq+  ++ + l ++  + q
  MMETSP1061-20121228|6040_1 387 TFEDVRFNYPTRPG-HTILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDplEGCVRlDG---IDIKELNVKHLRsMIGYVGQEPA-LFATTIAKNISYGAPNCSHSEIVKAAKLANAHDFISH--LPDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPK-ILLLDEATSALDSQSELVVQEALENIISTQQ 575
                 45566666665554.4688999988999999999999999999998877554432245555123...34455655555515899999876.5566888899999999999999999999999998875..56777889999999999999999999999999995.6679999999999999999999988776654 PP

  == domain 2    score: 46.4 bits;  conditional E-value: 3.5e-15
   TIGR00956 728 eagevlkstdltdeseevneeveeekesgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv...ttGvitegdrlvngrkldssFqR.siGYvqqqDlHletstvreaLrfsAylRqpkevskkekney.veevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaG 952
                  +  +l +t+ +  +e+v e+  +e      +  +r +++  + +  +r++Ld+ +  +  G+   L G sG Gk t++  + eR    + G ++      + +kl+  + R +iGYv q+   l ++t+ e + f A     k++  + k+    + +++    +++   + G +G+ L+  q++r++i+  Lv kP  +l lDe ts LD  +  ++ + l kl ++ 
  MMETSP1061-20121228|6040_1 638 PNLGQLAKTESQIGFEKVPERLAKE--DAMPLIVFRSVSFSYPTR-PNRMILDKFKLKIYQGETIGLCGISGGGKSTVMGLI-ERFydpEEGKVE--YFGEDVKKLNVKWYRdQIGYVGQEPT-LFDATISENIAFGAPSATRKQIESAAKQANaYDFIMDFP--DKFDTVIAGGSGTQLSGGQKQRIAIARALVKKP-EILLLDEATSALDNESERIVQEALDKLMESK 857
                 4555566666777777777777777..334577889999998876.579*****************************9865.554233578887..455567788877666479***99875.7789**********9999999988877654147777764..46777778*************************.6788*******************99998753 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.0   7.9e-14   5.7e-12     944    1144 ..     402     608 ..     379     629 .. 0.82
   2 !   39.7   0.0   2.2e-13   1.6e-11     943    1143 ..     683     890 ..     668     949 .. 0.81

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 7.9e-14
   TIGR01257  944 pavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdi.etnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsw..eeaqleme.amled..tglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrs..grtiimsthhmdeadllgdriaiisqgrlycsgtp 1144
                    ++ l i +   +  af+g  g gk+t + +l  +  p  g v + g di e n+  +r  +g + q   lf   t+a+ i + a    +s   + a+l     ++     g   +  ++  +lsgg ++++++a  +vg  k+++lde ts +d  s   + + l +  s   rt ++ +h +       d ia++  g +  +gt 
  MMETSP1061-20121228|6040_1  402 TILNGLSIDIPAGKTVAFVGPSGGGKSTVVKLLERFYDPLEGCVRLDGIDIkELNVKHLRSMIGYVGQEPALFA-TTIAKNISYGAPNCSHSEivKAAKLANAhDFISHlpDGYETQVGDKGSQLSGGQKQRIAIARVLVGKPKILLLDEATSALDSQSELVVQEALENIIStqQRTTVIIAHRLSTIR-NADIIAVVMGGTIVETGTH 608 
                  4566677888888999**********************************96689*****************97.69*****99998776664225566643212332212488889999999****************************************99998776622589999999987654.5788999999998888875 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 2.2e-13
   TIGR01257  943 rpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrswee.aqlemea..mledtglhhk...rneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrs..grtiimsthhmdeadllgdriaiisqgrlycsgt 1143
                  r  +d++++ +y+ +   + g  g gk+t + ++  +  p  g v   g+d++  n+   r+ +g + q   lf   t++e i f a    r + e a  + +a  ++ d   +           +lsgg ++++++a a+v    +++lde ts +d  s r + + l k      +t ++ +h +       dria i +gr+   g+
  MMETSP1061-20121228|6040_1  683 RMILDKFKLKIYQGETIGLCGISGGGKSTVMGLIERFYDPEEGKVEYFGEDVKkLNVKWYRDQIGYVGQEPTLFD-ATISENIAFGAPSATRKQIEsAAKQANAydFIMDFPDKFDtviAGGSGTQLSGGQKQRIAIARALVKKPEILLLDEATSALDNESERIVQEALDKLMEskDHTCVVIAHRLSTI-RNADRIAFIGDGRVKEIGS 890 
                  66789**********************************************97259999**************97.69********9888777654144444441133443333221114456789***************************************9999887541146888888888765.468**********976665 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0082      0.59     623     651 ..     404     432 ..     398     450 .. 0.87
   2 !   21.1   0.3   2.2e-07   1.6e-05     821     919 ..     517     607 ..     497     612 .. 0.82
   3 ?   -2.0   0.1       2.2   1.6e+02      15     649 ..     689     712 ..     682     716 .. 0.57
   4 !   27.8   0.0   2.2e-09   1.6e-07     823     904 ..     802     881 ..     786     888 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0082
   TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLin 651
                 l+ ++++ip g+ ++  G+sg Gkst+++
  MMETSP1061-20121228|6040_1 404 LNGLSIDIPAGKTVAFVGPSGGGKSTVVK 432
                 67789999999999999999999999885 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 2.2e-07
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd.kGntvvviehnldviksaDyiidlGPeGGekGGkvvasgt 919
                 ++G +   LsGG  qr+ +a+ L  +     + +lDe t  L  +    + e l+++++ +  t v+i h l  i++aD i          GG++v +gt
  MMETSP1061-20121228|6040_1 517 QVGDKGSQLSGGQKQRIAIARVLVGKP---KILLLDEATSALDSQSELVVQEALENIIStQQRTTVIIAHRLSTIRNADIIAV------VMGGTIVETGT 607
                 7899999****************8775...589*********9998777888898887526789***************9853......35566666555 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 2.2
   TIGR00630  15 idvelprdklvvitGlsGsGkssLafdtiyaeGqrrYveslsayarqfLgkldkPdvdsieGLsPaisidqkttsknprstvGtvteiydYlrllfarvGkaycpecgekiekqsaeqivdeilelpegkrvillaPvvrerkgefkklleklkkqGfarvrvdgevveleeelklekqkkhtidvvidrlkvkeeerkrlaesvetalklseGlleveledeeesakkeelfskkaaleeaglsleeleprlfsfnsplgaCpeCkGlGvkleldpekivdeeelsleeaaivalkksassyylqilkslaeklgfdldtplkdlseeakkavLyGsdeeveevkrekekekarlkkefeGvleelerryketeseaarealekflsekaCpsCkgtrlkkealavkvegksiadvselsveealeffeellkleeeekkiaeevlkeikerlkfLvdvGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetireaDyvvdiGPgaGehGGevvasgsleellkkkesltgqYlsgkkkievPkerrkaegkvltlkgakennlkdidvsiplglltvitGvsgsGkstL 649
                  ++++ + + + + G+sG Gks+                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   +
  MMETSP1061-20121228|6040_1 689 FKLKIYQGETIGLCGISGGGKST-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V 712
                 44555555555555555555555...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3 PP

  == domain 4    score: 27.8 bits;  conditional E-value: 2.2e-09
   TIGR00630 823 GqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd.kGntvvviehnldviksaDyiidlG 904
                 G + t LsGG  qr+ +a+ L k+     + +lDe t  L  +  + + e l++l++ k +t vvi h l  i++aD i  +G
  MMETSP1061-20121228|6040_1 802 GGSGTQLSGGQKQRIAIARALVKKP---EILLLDEATSALDNESERIVQEALDKLMEsKDHTCVVIAHRLSTIRNADRIAFIG 881
                 78899****************9985...699*************99999*****9863689****************997666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        67  (0.0163335); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 2.06u 0.19s 00:00:02.25 Elapsed: 00:00:01.37
# Mc/sec: 1369.99
//
Query:       MMETSP1061-20121228|6046_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-13   45.6   0.0    1.1e-12   45.4   0.0    1.0  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    1.4e-10   38.5   0.0    1.9e-10   38.1   0.0    1.1  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    1.1e-06   25.5   0.0    1.3e-06   25.3   0.0    1.0  1  TIGR02079 THD1: threonine dehydratase
     0.0029   14.1   0.0     0.0034   13.8   0.0    1.1  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic


Domain annotation for each model (and alignments):
>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.4   0.0   1.1e-15   1.1e-12       4      67 ..      35      98 ..      32     101 .. 0.94

  Alignments for each domain:
  == domain 1    score: 45.4 bits;  conditional E-value: 1.1e-15
   TIGR02991  4 ddieraaeriagrveetplveseslsellGvpvllklesrqttGsfklrGatnavlslsdaera 67
                 di ra   i + +++t  ++s +lsel+  ++ lk e rq tGsfk rGa na+l l +++++
  MMETSP1061-20121228|6046_1 35 GDICRAMVAIKSGIRRTECIQSFFLSELCQADIYLKPEVRQFTGSFKERGARNAILDLLEQQQQ 98
                58999****************************************************9888765 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.8e-13   1.9e-10       2      49 ..      52      99 ..      51     101 .. 0.93

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 1.8e-13
   TIGR01127  2 pleksstlsditgaevylklenlqktGsfkirGalnkiaklseeekkr 49
                  ++s +ls++++a++ylk e  q tGsfk rGa n i  l+e+++++
  MMETSP1061-20121228|6046_1 52 ECIQSFFLSELCQADIYLKPEVRQFTGSFKERGARNAILDLLEQQQQQ 99
                568999*************************************99985 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.3e-09   1.3e-06       2      64 ..      36      98 ..      35     101 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.3e-09
   TIGR02079  2 diekakkrlkevvketPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdeele 64
                di +a   +k+ +++t   ++  lse  +a+iylk e  q   s+k rGa n++  l +++++
  MMETSP1061-20121228|6046_1 36 DICRAMVAIKSGIRRTECIQSFFLSELCQADIYLKPEVRQFTGSFKERGARNAILDLLEQQQQ 98
                6889999***********************************************888877765 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.3e-06    0.0034      22      64 ..      55      97 ..      37     100 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.3e-06
   TIGR01124 22 kaaklserlknrvllkredlqpvfsfklrGaynkmaqlsaeqk 64
                ++  lse  +  ++lk e +q   sfk rGa n + +l ++q+
  MMETSP1061-20121228|6046_1 55 QSFFLSELCQADIYLKPEVRQFTGSFKERGARNAILDLLEQQQ 97
                55679999**************************999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 611.95
//
Query:       MMETSP1061-20121228|6045_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.54
# Mc/sec: 904.37
//
Query:       MMETSP1061-20121228|6047_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 2761.99
//
Query:       MMETSP1061-20121228|6049_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 452.53
//
Query:       MMETSP1061-20121228|6050_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 2331.81
//
Query:       MMETSP1061-20121228|6052_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-42  143.8   0.0    2.3e-42  143.3   0.0    1.1  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
    5.3e-05   20.1   0.0    8.3e-05   19.5   0.0    1.2  1  TIGR00518 alaDH: alanine dehydrogenase
  ------ inclusion threshold ------
      0.023   11.3   0.7      0.053   10.1   0.5    1.6  1  TIGR00936 ahcY: adenosylhomocysteinase


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   0.0   1.7e-45   2.3e-42      56     283 ..     186     422 ..     153     452 .. 0.81

  Alignments for each domain:
  == domain 1    score: 143.3 bits;  conditional E-value: 1.7e-45
   TIGR01327  56 lleaaekLkvigR..aGvGvDNidiea.atkkGilvvNaPegntisaaElalalllalaRkipqadksvkekkWerkkflGtElygktlGviGlGriGsevakrakalgmkvlayDPyiseek..aeklgv.....ellkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt.dnklleldnvvvtpHlgAste 283
                 l+e +++L  i    aG+ v   d  a ++   +++ Na  + + + aE+++  +   a+++p   ++ +e+kW++  ++ +E++g tlGviG G iG   ak aka gm+v+a    ++++   a++  +     + +++l+ l+ae+D +   +Plt+ t+++ig+++++ +Kkg + +N+ RG i+dE+ALv al+eg++r+a+lDvf+kEP   d++l +ldnv ++pH    t 
  MMETSP1061-20121228|6052_1 186 LIETVPSLEWIHCrsAGIDVLTSDTLAnTSDETLVMTNAKGAFSSTLAEYTMLAISYFAKDLPLLLRNKRESKWQK--YSVEEIRGSTLGVIGYGDIGRAAAKLAKAYGMTVIALRKNVPSAEqiAADPFCdavygDGSDNLNRLFAESDYVLCSAPLTPATHKMIGRDQFDAAKKGCVFINVGRGPIVDEEALVAALQEGRLRGAGLDVFTKEPLDeDSELWKLDNVLLSPHNMDQTD 422
                 67788888888651245555455654405556667778888999999***************************98..9*************************************9998753222222221111134799**************************************************************************98799*************877775 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   6.1e-08   8.3e-05     166     267 ..     268     367 ..     262     383 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 6.1e-08
   TIGR00518 166 eagkvtiiGgGvvGtnaaklavGlGatvtildinvdrlrqld.elfgsriktrysnaveiedavkeadlligavlipGakapklvseelvkqmkpGavivdva 267
                 + + + +iG G +G  aakla   G tv  l  nv   +q+  + f++ +    s   +++ + +e+d ++++  ++ a   k++ +++ +  k G+v ++v 
  MMETSP1061-20121228|6052_1 268 RGSTLGVIGYGDIGRAAAKLAKAYGMTVIALRKNVPSAEQIAaDPFCDAVYGDGS--DNLNRLFAESDYVLCSAPLTPAT-HKMIGRDQFDAAKKGCVFINVG 367
                 5567789*********************************96367**99876655..58999*********988777664.689999999*******999874 PP

>> TIGR00936  ahcY: adenosylhomocysteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.5   3.9e-05     0.053     203     235 ..     267     299 ..     264     385 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3.9e-05
   TIGR00936 203 iaGktvvvaGyGwvGkGvaerlrGlGarvivte 235
                 i G+t+ v+GyG++G+  a+ ++  G +vi   
  MMETSP1061-20121228|6052_1 267 IRGSTLGVIGYGDIGRAAAKLAKAYGMTVIALR 299
                 6799999*********************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 1880.84
//
Query:       MMETSP1061-20121228|6057_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-06   23.0   0.6    9.6e-06   23.0   0.4    1.8  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.4   2.3e-09   9.6e-06      13      60 ..      55     102 ..      45     170 .. 0.75
   2 ?   -3.7   1.6      0.32   1.3e+03      74     124 ..     213     264 ..     194     284 .. 0.40

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.3e-09
   TIGR02349  13 seeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekra 60 
                 ++e +kk Y++l+  +HPDrn + +++ + +++in+ y+vL+ e  r 
  MMETSP1061-20121228|6057_1  55 NRESVKKKYKRLSLVHHPDRNGNAEKSIQEMQRINHYYDVLEGELDRL 102
                 6899******************999999*************9887664 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.32
   TIGR02349  74 aggggagfegfeasefgd.igdifeeffgggggsgrr..rskarrgedlevele 124
                 ++g +++ ++ e +e+++  ++i++++ + ++ ++r+    +++r +  +++++
  MMETSP1061-20121228|6057_1 213 QQGRQQERRDME-QEMKReRDEIMQKVNDFRR-KQRKlrLLNNQRSAMKKLDTD 264
                 111111111111.2222224445554444332.333333233333344444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       357  (0.0870307); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.39
# Mc/sec: 1773.39
//
Query:       MMETSP1061-20121228|6059_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.22
# Mc/sec: 2033.83
//
Query:       MMETSP1061-20121228|6060_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   10.5   6.1      0.055   11.6   2.8    1.5  2  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.9    0.0081        33      33      61 ..      30      58 ..       9      69 .. 0.46
   2 ?   11.6   2.8   1.3e-05     0.055      23      82 ..      48     107 ..      39     115 .] 0.90

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0081
   TIGR03495 33 kalkaqqaelekkanqleallaeakrnee 61
                k+ ++ + ++e k++ +  ++++++r++e
  MMETSP1061-20121228|6060_1 30 KTKNKGSSKVETKDKGIVEATKQINRKNE 58
                22233333344444444444444444433 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1.3e-05
   TIGR03495  23 earaslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrek 82 
                 ea +++++ ++ l a++a++++ +  l+ l+++ +++++ q+  r++++   ++l++r k
  MMETSP1061-20121228|6060_1  48 EATKQINRKNERLIAAKAANAHTKFYLNDLTEKGQNESQRQVSIRNKKQGKPTKLSDRLK 107
                 7899*************************************************9999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       307  (0.0748415); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|6062_1  [L=1508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-05   21.2   0.0     0.0035   14.1   0.0    2.5  2  TIGR02037 degP_htrA_DO: peptidase Do
  ------ inclusion threshold ------
      0.028   11.4   0.0      0.057   10.4   0.0    1.4  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0    0.0017       3.4      54      79 ..    1250    1276 ..    1215    1282 .. 0.87
   2 !   14.1   0.0   1.7e-06    0.0035     172     198 ..    1419    1447 ..    1406    1470 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0017
   TIGR02037   54 eeekveslGSGviisad.gyvlTNnHv 79  
                  +++++ ++G+G++ +++ g+v+T +H 
  MMETSP1061-20121228|6062_1 1250 DSKREMTVGTGFVANKElGLVVTASHT 1276
                  5678899*******************6 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.7e-06
   TIGR02037  172 IQtDaai..NpGNSGGpLvnlkGeviGiN 198 
                  IQ D     N+G SGGp vn +Gev+Gi 
  MMETSP1061-20121228|6062_1 1419 IQVDFGTyeNHGYSGGPCVNDEGEVVGIL 1447
                  6666544349*****************95 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.8e-05     0.057     195     230 ..    1427    1463 ..    1412    1481 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.8e-05
   TIGR02038  195 inaGnsGGalvnsaGelvGintlsfqkaadee.aeGi 230 
                   n+G sGG  vn +Ge+vGi +  f+k +  + ++Gi
  MMETSP1061-20121228|6062_1 1427 ENHGYSGGPCVNDEGEVVGILSREFDKHSYLIpSKGI 1463
                  49***********************998875414566 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.62u 0.15s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 4523.63
//
Query:       MMETSP1061-20121228|6065_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1253.90
//
Query:       MMETSP1061-20121228|6064_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1314.61
//
Query:       MMETSP1061-20121228|6063_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-21   74.0   0.1    9.7e-20   69.1   0.0    2.0  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    6.8e-20   69.4   0.1      9e-20   69.0   0.1    1.1  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    2.8e-16   57.5   0.1      4e-16   57.0   0.1    1.2  1  TIGR02415 23BDH: acetoin reductases
    7.6e-16   55.4   0.6    1.3e-15   54.7   0.4    1.3  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    9.7e-16   55.6   0.1    3.1e-14   50.7   0.0    2.0  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    7.4e-15   53.1   0.2    1.4e-14   52.2   0.1    1.4  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    6.6e-13   46.4   0.4    8.5e-13   46.1   0.3    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.6e-11   42.0   0.7    9.9e-11   39.4   0.1    2.0  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    2.7e-10   37.6   0.2    4.3e-10   37.0   0.1    1.4  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    8.8e-09   32.9   0.3    1.5e-08   32.2   0.2    1.4  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    0.00032   18.0   0.0    0.00051   17.3   0.0    1.5  2  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0071   13.3   0.1       0.66    6.9   0.0    2.1  2  TIGR01809 Shik-DH-AROM: shikimate-5-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.045        15       2      46 ..       9      55 ..       8      73 .. 0.74
   2 !   69.1   0.0   2.8e-22   9.7e-20      37     238 ..      83     298 ..      68     299 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.045
   TIGR01830  2 lvtGasr..giGkaiakklakega.kvviterskeekaeelaeelkea 46
                lv Ga++  +iG  +a +l kega +v+i+  ++++k+++++e l+ +
  MMETSP1061-20121228|6063_1  9 LVIGATNptSIGFCVAWTLLKEGAgHVTIM-GRDQSKLDDAVELLQRQ 55
                7888875338************99456666.55667777777766654 PP

  == domain 2    score: 69.1 bits;  conditional E-value: 2.8e-22
   TIGR01830  37 eelaeelkeagvkaaavkldvsdeeevkelv.eeveeelg.eidilvnnAGitrDkll.lrmkeed.wdevikvnLkgvfnvtkavlkkmikkr...sGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkile.......qiplkrlgkpeevaaavafLasdeasyitGqvlkvdGGl 238
                 ++  ++ + +  ++++v  d+++ e+++++  +++e+++g ++d+lv+  G    + l l   + d ++ + +v + +   +++a++  + k++    G ++ ++sv +++  +  a    + a   ++t++la      n++vn v  G i+t   +++  k ++++++       + pl+r g+pe+va+av++Las ++ + tG+ l+vdGGl
  MMETSP1061-20121228|6063_1  83 TNNDNNSTTTKPRVSGVLGDLKRPETMTAVAlDAIEKRMGgRLDVLVCCGGNGYSEYLgLSADDLDsYRIMQDVAVLSPMVLARAAVPYLSKSQnrhGGTVVMVGSVSATVPWPSTAPHNVAMAAKNTMTQTLAFQHRGDNVRVNGVQAGVIHTGALDVMAAKKHQSVESyaalratAQPLGRNGTPEDVANAVLYLASPSSGFTTGELLRVDGGL 298
                 2333333344468999999***99999887515666666449******99987655441555554415566689999*********99998754223699******************************************************99999998888776542112222569***********************************8 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.1   2.6e-22     9e-20      66     264 ..      95     298 ..      77     299 .. 0.85

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 2.6e-22
   TIGR03971  66 kvlarkadvrkleelravveegvee..fGrldvvvanaGvlsygrafelseeq...WdtvldvnlkGvWktvkavvPalierkn..GGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                 +v    +d+++ e + av  +++e+   Grldv+v   G  +y++   ls+++   ++ + dv +       +a+vP l   +n  GG++++v+sv++ +  p +a + +a     ++t+tla +    ++rvn ++   ++t  ++   +++     e++a    +a+p+    +pedva++v++las+ s + tG+ l+vd G 
  MMETSP1061-20121228|6063_1  95 RVSGVLGDLKRPETMTAVALDAIEKrmGGRLDVLVCCGG-NGYSEYLGLSADDldsYRIMQDVAVLSPMVLARAAVPYLSKSQNrhGGTVVMVGSVSATVPWPSTAPHNVAMAAKNTMTQTLAFQHRGDNVRVNGVQAGVIHTGALDVM-AAKKHQSVESYAALRATAQPLGRNGTPEDVANAVLYLASPSSGFTTGELLRVDGGL 298
                 5556678999999999******9852259*****98766.799999999987612256689*****************98654333********************9999999999****************************99944.444455667777777899***999*****************************995 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.1   1.2e-18     4e-16      70     252 ..     116     299 ..      72     301 .. 0.81

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 1.2e-18
   TIGR02415  70 qavekl.GeldvlvnnaGvalvtpi..leiteeeleklynvnvkgvlfGiqaaaekfkklkhk..GkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGlv 252
                    +++ G ldvlv   G + ++ +     + ++   + +v v + +   +aa+  + k +++  G ++   s+++++  p  + +  +  a  ++tqt a +   + + vn+   G+++t   + +++k+     +++++  +  + +  lGr+ +Pedva+ v +las  s + tG  + vdGGl 
  MMETSP1061-20121228|6063_1 116 AIEKRMgGRLDVLVCCGGNGYSEYLglSADDLDSYRIMQDVAVLSPMVLARAAVPYLSKSQNRhgGTVVMVGSVSATVPWPSTAPHNVAMAAKNTMTQTLAFQHRGDNVRVNGVQAGVIHTGALDVMAAKKH----QSVESYAALRATAQPLGRNGTPEDVANAVLYLASPSSGFTTGELLRVDGGLH 299
                 334445267999999888777765510334445666678999***99999****99988765444********************************************************99887766543....4445555555666789**********************************96 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.7   0.4   3.8e-18   1.3e-15     418     671 ..       9     299 ..       4     302 .. 0.78

  Alignments for each domain:
  == domain 1    score: 54.7 bits;  conditional E-value: 3.8e-18
   TIGR02632 418 lvtGga..sGiGrevarrlvdeGa.hvvladldaeaaeavaaelvdkfGadkava...................................lkldvtdeeav.kaafaevalayGG.vdivvnnaGiavskpl..eeteleeWdlnldilatGyflvareaarllrk.qg.lggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaGva 671
                 lv+G++  + iG  va  l +eGa hv +   d+ ++++  + l+ +  +  + +                                   +  d+   e++ + a++++    GG +d++v   G   s+ l   +  l+++ +  d+ +    ++ar a+  l k q+  gg +v+++s+ a v  +++  ++ a aa++ + ++la +     +rvn+v+   +  G+           aa+   +++  +   +    l+r+ +ped+a+av++las ++  ttG+++ vd+G++
  MMETSP1061-20121228|6063_1   9 LVIGATnpTSIGFCVAWTLLKEGAgHVTIMGRDQSKLDDAVELLQRQVDETLGGSgssntdghntndnnnnnndtnndnnstttkprvsgVLGDLKRPETMtAVALDAIEKRMGGrLDVLVCCGGNGYSEYLglSADDLDSYRIMQDVAVLSPMVLARAAVPYLSKsQNrHGGTVVMVGSVSATVPWPSTAPHNVAMAAKNTMTQTLAFQHRGDNVRVNGVQAGVIHTGALDVM-------AAKKHQSVESYAALRATAQPLGRNGTPEDVANAVLYLASPSSGFTTGELLRVDGGLH 299
                 566665224688888888888887677788888888877766666555444444455677888888888888888888888888888888999998766551568899999999879*****9998888865115666999*******************9877542542799************************************999889******8655544544333.......44444455666677788889***********************************98 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0     0.029        10       4      46 ..       8      53 ..       5      68 .. 0.77
   2 !   50.7   0.0     9e-17   3.1e-14      32     252 ..      77     298 ..      65     301 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.029
   TIGR01963  4 alvtGaa..sGiglaiakelaaaGa.kvvvndleeeaaeaaakele 46
                 lv Ga+  + ig+ +a +l ++Ga +v++ + ++ +++ a + l+
  MMETSP1061-20121228|6063_1  8 CLVIGATnpTSIGFCVAWTLLKEGAgHVTIMGRDQSKLDDAVELLQ 53
                57888873357*************9679999999877776655554 PP

  == domain 2    score: 50.7 bits;  conditional E-value: 9e-17
   TIGR01963  32 dleeeaaeaaakeleeaggevlalkadvtkeeeiad.lieavaaefg.sldiLvnnAGiqhva..pieefptekfekiiavnltsafhtiraalpimkkqg..w.GriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgGw 252
                 +  +++ ++ +++ +++  +v  +  d+ + e ++   ++a+++++g +ld+Lv   G    +   +   + +++  +++v + s++++ raa+p + k++  + G ++ ++sv + v  +  ++ + a  +   +t++lA      ++++n +  g ++t   +  +    k++ ++  ++++    + qp +r  t+e+va+++l+las ++   tG+ l +dgG 
  MMETSP1061-20121228|6063_1  77 NN-NNNDTNNDNNSTTTKPRVSGVLGDLKRPETMTAvALDAIEKRMGgRLDVLVCCGGNGYSEylGLSADDLDSYRIMQDVAVLSPMVLARAAVPYLSKSQnrHgGTVVMVGSVSATVPWPSTAPHNVAMAAKNTMTQTLAFQHRGDNVRVNGVQAGVIHTGALD--VMAAKKHQSVESYAALRA---TAQPLGRNGTPEDVANAVLYLASPSSGFTTGELLRVDGGL 298
                 33.33444455566677778889999999988775416788888875279****987765555116778899***********************99765422336*******************************************************9775..566667777877777775...789***********************************96 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.2   0.1   4.1e-17   1.4e-14      26     242 .]      72     300 ..      60     300 .. 0.76

  Alignments for each domain:
  == domain 1    score: 52.2 bits;  conditional E-value: 4.1e-17
   TIGR01829  26 kvvanvapneerakewlqekevegfdvavvkadvssfeeaka.avakveael.GpvdvlvnnaGitrdavf..kkmtkeqWeevidtnlnsvfnvtr...pviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkiva.......qiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGlym 242
                 +   n ++  ++ ++  +++  ++  v  v +d++  e+ +a a++ +e+ + G++dvlv + G    + +     + +++  + d+ + s + ++r   p +++ ++r  G ++ + sv         a +  a a    +t++la +    +v vn +  G i+t     + ++  +++ +         P++r g+pe++a+av +las ++g+ tG+ l v+GGl++
  MMETSP1061-20121228|6063_1  72 NTNDNNNN--NNDTNNDNNSTTTKPRVSGVLGDLKRPETMTAvALDAIEKRMgGRLDVLVCCGGNGYSEYLglSADDLDSYRIMQDVAVLSPMVLARaavPYLSKSQNRHGGTVVMVGSVSATVPWPSTAPHNVAMAAKNTMTQTLAFQHRGDNVRVNGVQAGVIHTGALDVMAAKKHQSVESyaalratAQPLGRNGTPEDVANAVLYLASPSSGFTTGELLRVDGGLHL 300
                 44433333..333344455555666788889999998876552688888877369*****999988777651133444556666677776666665522266788999***********************************************************88777766666665431111112569***********************************985 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.3   2.5e-15   8.5e-13      69     249 ..     112     299 ..      83     300 .. 0.79

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 2.5e-15
   TIGR03206  69 aavaaaeealg.pvdvlvnnag..wdvlkpflktekaewerliainltgalymhhavlkgmv...erkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaf.traiplgrlgkpddlagailflasddaafitgqvlsvsgglt 249
                 +a+ a+e+ +g   dvlv   g  +  +  +   +   +  +  + +   + +  a ++ +    +r+ g +v + s +a v     a + +      ++++tla ++  +++ vn v  g  +t  l+ ++++ +++     a+ + a plgr g p+d+a a+l+las  ++f tg++l v ggl 
  MMETSP1061-20121228|6063_1 112 VALDAIEKRMGgRLDVLVCCGGngYSEYLGLSADDLDSYRIMQDVAVLSPMVLARAAVPYLSksqNRHGGTVVMVGSVSATVPWPSTAPHNVAMAAKNTMTQTLAFQHRGDNVRVNGVQAGVIHTGALDVMAAKKHQSVESYAALrATAQPLGRNGTPEDVANAVLYLASPSSGFTTGELLRVDGGLH 299
                 55667776664267888875441145555555555555655666777888888888777654222688899***********9999999999999999******************************9998877766555555426799************************************96 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.16        55       8      54 ..       8      56 ..       4      63 .. 0.79
   2 !   39.4   0.1   2.9e-13   9.9e-11      53     244 ..      95     297 ..      66     301 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.16
   TIGR01832  8 alvtGan..tGlGqgiavglaeaGadivgvgiselsetqekvealGrkf 54
                 lv Ga   t +G  +a +l + Ga  v++  +++s+  ++ve l r++
  MMETSP1061-20121228|6063_1  8 CLVIGATnpTSIGFCVAWTLLKEGAGHVTIMGRDQSKLDDAVELLQRQV 56
                566676434899************9999998888888888888777665 PP

  == domain 2    score: 39.4 bits;  conditional E-value: 2.9e-13
   TIGR01832  53 kflslkadladeeaakalvdeavee.a.gkidilvnnaGiirredavefsekdwdd..vl.nvnlkavfllsqavakkllkqG..rkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileri.....PagrwGepedlagaavflassasdyvnGailavdGG 244
                 +++ +  dl+ +e+++a+  +a+e+ + g++d+lv   G    ++ + +s  d d   ++ +v + + ++l++a+   l k+   + g ++ + s+ +       + +  +  a   +t++la ++   +++vn +  G ++t   + + a ++++ +  + +     P gr G+ped+a+a+++las +s + +G  l vdGG
  MMETSP1061-20121228|6063_1  95 RVSGVLGDLKRPETMTAVALDAIEKrMgGRLDVLVCCGGNG-YSEYLGLSADDLDSyrIMqDVAVLSPMVLARAAVPYLSKSQnrHGGTVVMVGSVSATVPWPSTAPHNVAMAAKNTMTQTLAFQHRGDNVRVNGVQAGVIHTGALDVMAAKKHQSVESYAALrataqPLGRNGTPEDVANAVLYLASPSSGFTTGELLRVDGG 297
                 56667789999999988876776652325999999987764.5667778877777533443788888888888877666554332567888888776554444444455555666689**************************99999998887755433221123399*********************************9 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.1   1.3e-12   4.3e-10     129     265 ..     160     301 ..      99     303 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 1.3e-12
   TIGR02685 129 aplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllp..dampeevk...eey...rr.kvplgqreasaeqiadvviflvskkakyitGtiikvdGGlslv 265
                 +p++l +a       ++ + ++ ++ +v  v a +  p ++ + +++a  a + +t++ a++    ++rvngv  G+      d m+ +++   e y   r    plg r+ + e++a++v++l s+++++ tG +++vdGGl l+
  MMETSP1061-20121228|6063_1 160 SPMVLARAAVPYL-SKSQNRHGGTVVMVGSVSATV--PWPSTAPHNVAMAAKNTMTQTLAFQHRGDNVRVNGVQAGVIHTGalDVMAAKKHqsvESYaalRAtAQPLG-RNGTPEDVANAVLYLASPSSGFTTGELLRVDGGLHLS 301
                 5666666555444.444455555555666666655..5556667888888999**********************985322112333222212255523243135777.67899*****************************986 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.2   4.3e-11   1.5e-08      73     238 ..     120     298 ..      67     299 .. 0.74

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 4.3e-11
   TIGR01831  73 ehgayygvvlnagiardaafpalseedwdav.ietnldgfy.nvihplvmpmi...rarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemv...aevekdlke...alk..lvpmkrvgkaeevaalaaflmsddaayvtrqvisvnggm 238
                 + g    v+++ g +  + +  ls +d d+  i  ++  +   v+    +p +   + r+gg ++ + svs  +       +  a a     t++la +    ++ vn +  g+i+t+ +   a  +++ +e   al+    p+ r g +e+va+ + +l s ++++ t +++ v+gg+
  MMETSP1061-20121228|6063_1 120 RMGGRLDVLVCCGGNGYSEYLGLSADDLDSYrIMQDVAVLSpMVLARAAVPYLsksQNRHGGTVVMVGSVSATVPWPSTAPHNVAMAAKNTMTQTLAFQHRGDNVRVNGVQAGVIHTGALdvmAAKKHQSVEsyaALRatAQPLGRNGTPEDVANAVLYLASPSSGFTTGELLRVDGGL 298
                 45666677777777777777788888877642444444443134445556655333689**********************************************************75511133444444412233321569**********************************96 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       2.7   9.3e+02      15      45 ..      22      49 ..       8      58 .. 0.58
   2 !   17.3   0.0   1.5e-06   0.00051     116     222 ..     152     258 ..      78     290 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 2.7
   TIGR01500 15 elaqelakrlkaegsvlvLlaRndeaLkesk 45
                 +a  l k   +    +++++R++  L ++ 
  MMETSP1061-20121228|6063_1 22 CVAWTLLK---EGAGHVTIMGRDQSKLDDAV 49
                44444444...45557788888888776654 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 1.5e-06
   TIGR01500 116 kyydsnvtslvvltsellkklkelq.glektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqsqvreeasdpdvkalyrelke 222
                    d  v s +vl+   +  l ++q     tvv + s++a  p +s a +  + aa++ + q La  ++ ++v+v     Gv+ t     +  + ++   ++ y  l++
  MMETSP1061-20121228|6063_1 152 IMQDVAVLSPMVLARAAVPYLSKSQnRHGGTVVMVGSVSATVPWPSTAPHNVAMAAKNTMTQTLAFQHRgDNVRVNGVQAGVIHTGALDVMAAKKHQ--SVESYAALRA 258
                 445677899999999999999989757789******************************************************9754444333333..3445555555 PP

>> TIGR01809  Shik-DH-AROM: shikimate-5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.011       3.6     126     172 ..       6      55 ..       2      75 .. 0.76
   2 !    6.9   0.0    0.0019      0.66      80     124 ..     199     243 ..     169     262 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.011
   TIGR01809 126 taglviGaGG.tsr..aavyaLasLGvkkifvinRskdklkkLvellvse 172
                  + lviGa   ts      ++L++ G  +++++ R ++kl+  vell+ +
  MMETSP1061-20121228|6063_1   6 NNCLVIGATNpTSIgfCVAWTLLKEGAGHVTIMGRDQSKLDDAVELLQRQ 55 
                 5788999875244311334679999******************9998765 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0019
   TIGR01809  80 tdrakliGsvntvlrtqnkklkgdntDwdGiakalanigkfekva 124
                 + +   + + nt+++t   + +gdn  ++G++  ++  g  + +a
  MMETSP1061-20121228|6063_1 199 APHNVAMAAKNTMTQTLAFQHRGDNVRVNGVQAGVIHTGALDVMA 243
                 5556667899***********************999999777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 1251.90
//
Query:       MMETSP1061-20121228|6066_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2777.05
//
Query:       MMETSP1061-20121228|6070_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   13.7   0.1     0.0092   12.8   0.1    1.5  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   2.2e-06    0.0092     188     234 ..     360     406 ..     256     418 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.2e-06
   TIGR01843 188 ekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqe 234
                 + +  +r  lL  + +++elqge+++lea+l+++++el+e++ + +e
  MMETSP1061-20121228|6070_1 360 KTKRARRKSLLRHQSSVRELQGEIDNLEAQLSSIRSELEEMQIEEAE 406
                 344568999*******************************9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 2685.15
//
Query:       MMETSP1061-20121228|6071_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.4   1.5      0.034   10.9   1.0    1.1  1  TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase


Domain annotation for each model (and alignments):
>> TIGR02426  protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.0   8.3e-06     0.034     113     194 ..     296     378 ..     292     405 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.3e-06
   TIGR02426 113 daldllladlerlaeaLaelaa.rhrdtpltarT.llQqAvpttvglkaagwlaavlrardrlealrtealalqfGGAaGtlaa 194
                 ++++ ++a+l+ + ++L +l++ ++r+++   r  l Q+A+ +t +l ++++++ v++ ++ l++l t   +    GA+ t a+
  MMETSP1061-20121228|6071_1 296 EVVNEVMAELKSMQQTLLALQTeQQRQNQNKRRDfLDQAATTSTDSLTIESVISNVENMQKTLQTLDTVE-NEDDVGATQTEAS 378
                 5678999*****9999888765156777777776256889999**********************99643.3333455555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       373  (0.0909313); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 2107.43
//
Query:       MMETSP1061-20121228|6073_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.6   0.2      0.028   12.4   0.1    1.1  1  TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit


Domain annotation for each model (and alignments):
>> TIGR01947  rnfG: electron transport complex, RnfABCDGE type, G subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   6.8e-06     0.028      16      69 ..       6      57 ..       2      74 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.8e-06
   TIGR01947 16 alvneltkekIaeaekkaklealkqVlpdelydnkleeeivkkkdadtlklkvl 69
                  vn+ t+e++++a+++  +e+ k Vlp +  +  ++e  v++k ++++ lk++
  MMETSP1061-20121228|6073_1  6 QGVNQYTEEQLNKAAAHIVEEMEKTVLPVA--NFFELETSVMNKVVQQTTLKTI 57
                679*************************44..3233344444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 551.95
//
Query:       MMETSP1061-20121228|6074_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1382.74
//
Query:       MMETSP1061-20121228|6076_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|6079_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-115  385.0   0.0    1.5e-87  292.3   0.0    2.0  2  TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1)
    4.2e-36  122.8   0.0    1.2e-26   91.7   0.0    2.1  2  TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family
    1.9e-30  103.9   0.4      3e-28   96.7   0.3    2.4  1  TIGR02779 NHEJ_ligase_lig: DNA polymerase LigD, ligase domain
    2.5e-25   87.2   0.1    6.7e-25   85.8   0.1    1.5  1  TIGR02776 NHEJ_ligase_prk: DNA ligase D


Domain annotation for each model (and alignments):
>> TIGR00574  dnl1: DNA ligase I, ATP-dependent (dnl1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.9   0.0   1.5e-29   1.6e-26     134     241 ..       3     114 ..       1     118 [. 0.89
   2 !  292.3   0.0   1.4e-90   1.5e-87     237     522 ..     141     429 ..     119     431 .] 0.91

  Alignments for each domain:
  == domain 1    score: 90.9 bits;  conditional E-value: 1.5e-29
   TIGR00574 134 erafsltndlekvakklleeglrekekdlsiklgiplkPmLAerlksieealkklgq.kflvEtKyDGeRvqvHk.dgdsvkiFSRrlenyteqypesl..ltefikkafka 241
                 ++++s ++ +++ ++ +l   l e++ +++ ++gip+ PmLA+++ksi e+lk+l++ +f++E+KyDGeR+q+Hk +++++k+FSR+l + + +ype++  ++e+ + a+++
  MMETSP1061-20121228|6079_1   3 RKVYSEVPSYDAPLEAALRVPLVELNAHCHFQPGIPVEPMLAKPTKSIREVLKRLDGqEFTCEYKYDGERAQIHKkKDGTLKVFSRNLLETSGKYPEVPlfVQEAAEAAVAQ 114
                 679999999999999999999999*******************************877*****************99*********************87555555555554 PP

  == domain 2    score: 292.3 bits;  conditional E-value: 1.4e-90
   TIGR00574 237 kafkavkslIldgEmvaidketgkilpFgtlksrkrkkdiksaekkvqvclfvFDiLylngksLtdeplaeRreiLesilkeipnrieivekkqvs..snaeeiekflneaisegcEGlvvKnlksiYepgkRgenwlKvkpeyleelgdnlDLvviGaylGkgkrtglygsfllavadeeseefktiekvgtGltdaeLeklgeklkklwidksesavleilsrsadekdirvdksivvevtlaeltespaykankskka...gislRfPrllrirsDkepedatnieei 522
                 +a+  v+s++ld E+va+d+e+g++ pF++l++r +k + + +++kvqv l +FD++ylngksL  ++l+eRr +L+  + ++++++++++  +++   ++  +e+fl+ a++ +cEGl+vK++  iYep+ R+ nwlK+k++yl ++gd+ DLv +Gay+G+gkrtg+yg +lla++++++eef+ ++k+gtG++d++L+ l+  l+++++++ ++  +      + e+d+++d  +v+e+++a+l++s+++k + +k +   gi lRfPr++r+r+Dk+p++at+ ++i
  MMETSP1061-20121228|6079_1 141 QALSPVDSFVLDAEVVAYDHEKGQLVPFQVLSTR-KKTVDEGETSKVQVILQAFDLMYLNGKSLLGKTLKERRTLLRTHFAPVEGKFQFAKALDAKedGDTTVLEQFLDAAVKGQCEGLMVKTMVDIYEPSRRSLNWLKLKKDYLDGVGDSFDLVPLGAYYGRGKRTGVYGAYLLACYEPDTEEFQSVCKIGTGFSDEDLQSLSASLNEHVLERGKKSSQYVV-SDTLEPDVWFDAVQVWEIKAADLSKSSTHKGALGKLEkgrGIGLRFPRFERVRDDKRPDQATSCDQI 429
                 4567799***************************.777888999***************************************************854455669************************************************************************************************************99877666333.4489***************************99999999************************9998 PP

>> TIGR04120  DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0     1e-10     1e-07     198     261 ..      35     101 ..      10     116 .. 0.85
   2 !   91.7   0.0   1.1e-29   1.2e-26     266     520 ..     147     427 ..     125     430 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1e-10
   TIGR04120 198 aakfrpvmLahpleee.d.laaldpedyaaewkwDGiRvqlvkekge.rrlysRtgedisdafPdll 261
                 ++ +  +mLa+p+++  + l+ ld ++++ e+k+DG R+q+ k+k+   +++sR   + s+++P++ 
  MMETSP1061-20121228|6079_1  35 PGIPVEPMLAKPTKSIrEvLKRLDGQEFTCEYKYDGERAQIHKKKDGtLKVFSRNLLETSGKYPEVP 101
                 5667789******987545899*******************98765428****************85 PP

  == domain 2    score: 91.7 bits;  conditional E-value: 1.1e-29
   TIGR04120 266 fdgvlDGellv..lregevapfadLqqRlnRktvtkkllaelPavvraYDlLeeegeDlRalpfeeRrarLealvarleearldlspllefk...dweelaalRaesrsagieGlmlkrrdsaYlaGRkkglWfkWkrdPl.....lvDavllYaqrGhGkRsslysDytfgvwdeeeeeeelvPvgkaYsGftDeelkkldkfvRkntierfGPvrevkke............lvlevafegiqrskRhks.........GvalRfPRisRlReDkpaaeadrle 520
                 ++ vlD e+++  +++g+  pf++L  R  +ktv++   +++ ++++a+Dl++ +g+ l  ++++eRr+ L + +a +e  +++ +  l++k   d   l++  +++ +   eGlm+k     Y + R+  +W k k+d l     + D v l a  G GkR+++y  y  ++++   ++ee+  v k   Gf De+l++l + + ++ +er    ++   +             v e+    + +s+ hk          G+ lRfPR++R+R Dk  ++a + +
  MMETSP1061-20121228|6079_1 147 DSFVLDAEVVAydHEKGQLVPFQVLSTR--KKTVDEGETSKVQVILQAFDLMYLNGKSLLGKTLKERRTLLRTHFAPVEG-KFQFAKALDAKedgDTTVLEQFLDAAVKGQCEGLMVKTMVDIYEPSRRSLNWLKLKKDYLdgvgdSFDLVPLGAYYGRGKRTGVYGAYLLACYEP--DTEEFQSVCKIGTGFSDEDLQSLSASLNEHVLERGKKSSQYVVSdtlepdvwfdavQVWEIKAADLSKSSTHKGalgklekgrGIGLRFPRFERVRDDKRPDQATSCD 427
                 5789*******444556699******99..8********************************************99985.456666665542225667888889999999***************************97644444789*************************99..8899999*************************996554442222346778999998999999999*******9555555555599****************9998766 PP

>> TIGR02779  NHEJ_ligase_lig: DNA polymerase LigD, ligase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.7   0.3   2.9e-31     3e-28      11     278 ..      57     386 ..      49     425 .. 0.83

  Alignments for each domain:
  == domain 1    score: 96.7 bits;  conditional E-value: 2.9e-31
   TIGR02779  11 psgddWlyevKyDGyRlllrie.egkvrlisRngrdltekfeelaaa.....................................akalklreavlDGEiVvldeeg..rsdFsalqnrlrakka.....epltylaFDlleldgedlrdlplseRkklLeellkeakakla....airlseelesdgqalleaavklglEGvvaKrkdsrYrsgr.skdWlKlKnrkrq.......evvivgYtesngsrsklgaLllavyedgk..lryvGkvgtGfseaelkalkerlke..leakkspfe.kgakekkgvvwvkPelvaevefaelt 278
                  +g+++  e KyDG R +++ + +g+ + +sRn  + + k++e+  +                                     ++++++++ vlD E+V  d+e      F+ l +r ++  +      ++++ aFDl++l+g++l    l+eR+ lL++     ++k +         +  ++  +++l+aavk + EG+  K     Y++ r s +WlKlK+   +        v +++Y    ++    ga lla ye +   ++ v k+gtGfs+++l++l++ l+e  le+ k+  +     + +  vw +   v e++ a+l+
  MMETSP1061-20121228|6079_1  57 LDGQEFTCEYKYDGERAQIHKKkDGTLKVFSRNLLETSGKYPEVPLFvqeaaeaavaqtkerarakgnatentadtakgdnndlQALSPVDSFVLDAEVVAYDHEKgqLVPFQVLSTRKKTVDEgetskVQVILQAFDLMYLNGKSLLGKTLKERRTLLRTHFAPVEGKFQfakaLDAKEDGDTTVLEQFLDAAVKGQCEGLMVKTMVDIYEPSRrSLNWLKLKKDYLDgvgdsfdLVPLGAYYGRGKRTGVYGAYLLACYEPDTeeFQSVCKIGTGFSDEDLQSLSASLNEhvLERGKKSSQyVVSDTLEPDVWFDAVQVWEIKAADLS 386
                 6899*****************999******************9988888999*******************************99999**************98641146799999988776667777788999*****************************999999975542222333445556899**********************9999********97654111111145588888776666889*********98778************************966666666655655555566677777777777777766 PP

>> TIGR02776  NHEJ_ligase_prk: DNA ligase D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.1   6.6e-28   6.7e-25       4     269 ..      59     385 ..      58     397 .. 0.80

  Alignments for each domain:
  == domain 1    score: 85.8 bits;  conditional E-value: 6.6e-28
   TIGR02776   4 geeWlyEvKyDGYRvllrie.dgkvrLitrngldltekfpelvkalk.....................................llklldailDGEiVvldek..gvadFaalQn.....aleegakekllylaFDlleleGedlralpleeRkkrLkellkaakld.ees.aikaseqveeete....allesacklklEGvvaKradsaYrsg.rskdWlKlKcrkrqev.......vitgytesngark.lgallvgvye..egelkyvgkvgtGfeaeelkellkrlkaleakasplek..kaakkkkgvhwvkPelvaeveyagl 269
                 g+e + E KyDG R +++ + dg  + ++rn l+ + k+pe+  +++                                     l+++++ +lD E+V+ d++   +  F+ l +      + e+ k ++++ aFDl++l+G++l    l+eR++ L+   +  +++ +   a++a e+ +   +    + l++a k + EG++ K +   Y+   rs +WlKlK    + v        +++y    +     ga l++ ye   +e + v k+gtGf++e+l++l ++l+++  ++ + ++    +++ +  +w +   v e++ a+l
  MMETSP1061-20121228|6079_1  59 GQEFTCEYKYDGERAQIHKKkDGTLKVFSRNLLETSGKYPEVPLFVQeaaeaavaqtkerarakgnatentadtakgdnndlqaLSPVDSFVLDAEVVAYDHEkgQLVPFQVLSTrkktvDEGETSKVQVILQAFDLMYLNGKSLLGKTLKERRTLLRTHFAPVEGKfQFAkALDAKEDGD---TtvleQFLDAAVKGQCEGLMVKTMVDIYEPSrRSLNWLKLKKDYLDGVgdsfdlvPLGAYYGRGKRTGvYGAYLLACYEpdTEEFQSVCKIGTGFSDEDLQSLSASLNEHVLERGKKSSqyVVSDTLEPDVWFDAVQVWEIKAADL 385
                 789999************9999********************999988999******************************9999999***********99862245789999998885444455556678889***************************99998632222333333333...23557999********************9776*********9765432121122158888777655556**********98899************************99877544433233334444445555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1723.86
//
Query:       MMETSP1061-20121228|6080_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       379  (0.092394); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.41
# Mc/sec: 1812.44
//
Query:       MMETSP1061-20121228|6081_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.85    7.9   5.0       0.18   10.0   0.8    1.8  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1       0.1   4.2e+02      61      66 .]      10      15 ..       9      15 .. 0.85
   2 ?   10.0   0.8   4.3e-05      0.18      12      45 ..      24      57 ..      17      62 .] 0.72

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.1
   TIGR02811 61 dYYrtl 66
                +YYrtl
  MMETSP1061-20121228|6081_1 10 AYYRTL 15
                7***97 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 4.3e-05
   TIGR02811 12 RdLLkglavgaaagavaaatgrvasasaaaepse 45
                R+ L ++av+ a ++++a++  v +   aa +++
  MMETSP1061-20121228|6081_1 24 RQALVEVAVAVAVAVAIAVSVSVINSVFAATEQS 57
                7889999999999999999888875443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       390  (0.0950756); expected 82.0 (0.02)
Passed bias filter:                      242  (0.0589956); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1061-20121228|6083_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1751.86
//
Query:       MMETSP1061-20121228|6087_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 2544.75
//
Query:       MMETSP1061-20121228|6088_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 918.19
//
Query:       MMETSP1061-20121228|6090_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   17.5   0.0    0.00059   15.9   0.0    1.6  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.4e-07   0.00059     161     268 ..      92     189 ..      83     198 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.4e-07
   TIGR04075 161 vdavt.iereklwndkrde..kGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlr.lvmsmvka.gaalcvpGnheekllrk 268
                 v+++  ++re l+n+ + +    P  + Gd+hG  ++l el++  G                p+  + +f+Gd+vdrG  s++++  lv   v+  ++ ++++Gnhe++ + +
  MMETSP1061-20121228|6090_1  92 VKSLCdMARETLLNESNVQpvPAPVTVCGDIHGQWHDLMELFRIGGS-A-------------PD-TNYLFMGDYVDRGYYSVETVSmLVCLKVRYpDRVFVLRGNHESRQITQ 189
                 55544377777777765551156788999999999999998754443.2.............22.2469**********99987752666667642788999*****986655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1641.06
//
Query:       MMETSP1061-20121228|6091_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 1116.83
//
Query:       MMETSP1061-20121228|6095_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1555.18
//
Query:       MMETSP1061-20121228|6096_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-97  322.9   6.3      7e-97  322.4   4.4    1.2  1  TIGR02244 HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
    1.3e-05   22.6   0.0      0.009   13.4   0.0    3.2  3  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
    0.00036   18.2   0.0       0.65    7.6   0.0    3.7  3  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
     0.0016   16.4   0.1       0.62    8.0   0.0    3.3  3  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
     0.0059   14.2   0.0       0.16    9.5   0.0    2.3  2  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
     0.0073   14.1   0.0      0.015   13.1   0.0    1.4  1  TIGR04059 Ald_deCOase: long-chain fatty aldehyde decarbonylase


Domain annotation for each model (and alignments):
>> TIGR02244  HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.4   4.4     1e-99     7e-97       1     342 [.      93     457 ..      93     458 .. 0.93

  Alignments for each domain:
  == domain 1    score: 322.4 bits;  conditional E-value: 1e-99
   TIGR02244   1 vfvnreLklekievvGfDlDyTLaqYkseelealiyelakekLveelgYpeellkleydpkfairGLvldkkkgnllKldsfkqikaatyhGlrklskeeveelYgs..kllsrsneesklklldtlFslpealllaqlvdylddnk...elaldekqiykdvraaldevhvegslkkkvaedlekyvlrdpklvklLeklkesGkklfLlTnsdykytdlvmkyllgeslke......kdWrdlFdvvivkakKPkFFteerplrevdvekdslklqevdk.lekg.............kvYsgGslkqleellkvrg.kevLYvGDhiysDvlkskkkrgwrtaliieELeeEvkvlknskelree 342
                 +f+nreLk+e+++++GfD+DyTLaqY+++++++l+++ ak+kLv++lgYp+e+l ++yd +  +rGL++d+ +gn lK+d++k++++a yhG++k++++  + lY +  + ++   e ++++ +dtlF++ +a l+a l+d+ d+++        +++iy+d+r+++d +h++g +k++va+++eky++ d+ ++ +L++ ke G klfLlTns ++yt + m+y+ +e+  +      ++W +lFdv i+ ++KP F  +   l+ ++v+ ++ +l+++d+ +e               kv++gG++++l++l+ vr+ +e+LYvGDh+ysDvl+sk++ gwr+  i++ELe E+k   ++ +lr++
  MMETSP1061-20121228|6096_1  93 IFCNRELKVENLKAIGFDMDYTLAQYQQPAFDKLAFDGAKDKLVKSLGYPKEVLDFAYDHERWTRGLIIDTVRGNFLKIDRHKYVRVA-YHGMEKIDSTTRKVLYSKnfNKVESFSE-KSYVNMDTLFQFVDAQLFALLIDLKDNGEyesLDFKTYSEIYRDIRESVDLCHRDGVIKDEVARNPEKYLVIDKGMIPMLRRYKEDGMKLFLLTNSFWEYTSTAMNYIYHEKKVDeetqkkNEWLELFDVAIAGSCKPAFLLDPY-LQLFRVNMQDGSLKNTDGvFEMNampngvddfleegKVFQGGNWQHLHKLMGVRSgDEILYVGDHLYSDVLRSKRTLGWRSLFIMPELEDEMKSFAKALPLRKQ 457
                 8***************************************************************************************.****************994455555554.89**************************988434456899********************************************************************987665567888899*****************98766.888888888888888888666657788888888888*****************998*************************************99888888776 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0099       6.7      19      42 ..      98     121 ..      78     130 .. 0.76
   2 ?    0.7   0.0       0.1        70      48      73 ..     284     309 ..     264     331 .. 0.72
   3 !   13.4   0.0   1.3e-05     0.009      94     162 ..     394     465 ..     372     473 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0099
   TIGR01668  19 llkkkdikgvvlDkDntlvepdsn 42 
                  lk +++k++ +D+D tl++ +++
  MMETSP1061-20121228|6096_1  98 ELKVENLKAIGFDMDYTLAQYQQP 121
                 38999*************998775 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.1
   TIGR01668  48 lkewieelkaaGlkllivSNnageqr 73 
                 + + + + k+ G+kl+++ N+  e+ 
  MMETSP1061-20121228|6096_1 284 MIPMLRRYKEDGMKLFLLTNSFWEYT 309
                 66788899999*********985443 PP

  == domain 3    score: 13.4 bits;  conditional E-value: 1.3e-05
   TIGR01668  94 gkafrralkemglt.seqvvvvGDrlfTDvllgnr.nGsltilveplvhpd.eafekrivrrvelallkiLk 162
                 g++ ++ +k mg+   ++++ vGD+l+ Dvl ++r +G +++++ p  + + + f k    r ++ +l+ L+
  MMETSP1061-20121228|6096_1 394 GGNWQHLHKLMGVRsGDEILYVGDHLYSDVLRSKRtLGWRSLFIMPELEDEmKSFAKALPLRKQIEYLRRLR 465
                 5577889999***97799***************984699999998866544145666666666666666555 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.056        38       2      24 ..     104     128 ..     103     238 .. 0.68
   2 ?    4.2   0.0      0.01       6.9      90     123 ..     275     308 ..     252     316 .. 0.87
   3 !    7.6   0.0   0.00094      0.65     161     191 ..     402     434 ..     397     493 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.056
   TIGR02253   2 ikavfFDlddTLidts..klaekal 24 
                 +ka+ FD+d TL + +  ++++ a 
  MMETSP1061-20121228|6096_1 104 LKAIGFDMDYTLAQYQqpAFDKLAF 128
                 5888888888886544113444444 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.01
   TIGR02253  90 laylkvypdvvkvLleLresGyrlgliTdgltek 123
                 ++yl    +++ +L + +e G++l l+T++  e+
  MMETSP1061-20121228|6096_1 275 EKYLVIDKGMIPMLRRYKEDGMKLFLLTNSFWEY 308
                 6788888899*******************87665 PP

  == domain 3    score: 7.6 bits;  conditional E-value: 0.00094
   TIGR02253 161 krlgvk.peeavmvGDrlekDikGakn.lglkt 191
                 k +gv+ ++e ++vGD+l++D+  +k+ lg  +
  MMETSP1061-20121228|6096_1 402 KLMGVRsGDEILYVGDHLYSDVLRSKRtLGWRS 434
                 678886256789*********987764256655 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0       0.1        70       1      33 [.     105     134 ..     105     140 .. 0.74
   2 !    8.0   0.0    0.0009      0.62       7      51 ..     262     305 ..     259     340 .. 0.79
   3 ?    2.6   0.0     0.043        30      97     129 ..     395     427 ..     390     434 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.1
   TIGR01662   1 klvvlDlDgtLiddvdyvteedeaelypevida 33 
                 k++ +D+D tL    +y+++  ++  +++++d+
  MMETSP1061-20121228|6096_1 105 KAIGFDMDYTLA---QYQQPAFDKLAFDGAKDK 134
                 899*********...566666666666666665 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0009
   TIGR01662   7 lDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqs 51 
                 +Dg++  d    ++e+   + +++i+ l+ +k+ G+k++++tN+ 
  MMETSP1061-20121228|6096_1 262 RDGVIK-DEVARNPEKYLVIDKGMIPMLRRYKEDGMKLFLLTNSF 305
                 799999.5666677777888999********************97 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.043
   TIGR01662  97 gmleealkrlneidakesvvvGDavltDleaak 129
                 g+++++ k +   + +e+++vGD++ +D+   k
  MMETSP1061-20121228|6096_1 395 GNWQHLHKLMGVRSGDEILYVGDHLYSDVLRSK 427
                 667777777744456799*****9999997666 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.047        32      21      58 ..     286     323 ..     281     328 .. 0.76
   2 !    9.5   0.0   0.00024      0.16     206     243 ..     400     437 ..     396     438 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.047
   TIGR01460  21 ealnrlrakgkpvvfvTNnsgrseedlaeklssllgvd 58 
                  +l+r +++g++++++TN+     +  ++ + + + vd
  MMETSP1061-20121228|6096_1 286 PMLRRYKEDGMKLFLLTNSFWEYTSTAMNYIYHEKKVD 323
                 579999************97777777777776655554 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00024
   TIGR01460 206 aeellkarakrrkvlmvGDnlrtDvlgAke.aGldslLv 243
                 +++l++ r+    +l vGD l++Dvl  k+ +G+ sl++
  MMETSP1061-20121228|6096_1 400 LHKLMGVRSGDE-ILYVGDHLYSDVLRSKRtLGWRSLFI 437
                 677777788886.9************998648***9986 PP

>> TIGR04059  Ald_deCOase: long-chain fatty aldehyde decarbonylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.1e-05     0.015     146     196 ..     464     514 ..     458     532 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.1e-05
   TIGR04059 146 lkanletvkeeleeankenlplvkkmlneveddakvlemekealvedflia 196
                 l+++l+   ee+++   +n plv+k+l+e+++d ++++     lve++  +
  MMETSP1061-20121228|6096_1 464 LREELSRKAEEVRRESDKNDPLVQKILEEMDEDEASIKSTLSPLVEEWHRS 514
                 789999999*******************************99999998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 2274.87
//
Query:       MMETSP1061-20121228|6099_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 390.23
//
Query:       MMETSP1061-20121228|6102_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 2351.36
//
Query:       MMETSP1061-20121228|6103_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-49  166.5   0.3    2.1e-49  166.2   0.2    1.1  1  TIGR02483 PFK_mixed: phosphofructokinase
    2.2e-35  119.9   1.1    1.1e-32  111.0   0.8    2.1  2  TIGR02482 PFKA_ATP: 6-phosphofructokinase
      2e-23   80.5   0.8    1.9e-21   74.0   0.1    2.1  2  TIGR02477 PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase
    2.2e-21   73.5   3.6    1.4e-19   67.6   2.7    2.1  1  TIGR02478 6PF1K_euk: 6-phosphofructokinase
     0.0091   13.3   0.5        1.4    6.1   0.1    3.0  3  TIGR02415 23BDH: acetoin reductases
  ------ inclusion threshold ------
       0.02   11.9   0.1      0.054   10.5   0.0    1.7  2  TIGR01508 rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase


Domain annotation for each model (and alignments):
>> TIGR02483  PFK_mixed: phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.2   0.2   3.1e-52   2.1e-49       3     323 ..     178     508 ..     176     510 .. 0.84

  Alignments for each domain:
  == domain 1    score: 166.2 bits;  conditional E-value: 3.1e-52
   TIGR02483   3 gvltgGGDcpGLnaviravvkkaiaeygae..vvgiregykGlleedlvk..lldledvegilarGGtilgssrtnpfkkeeeaedkikenlkelgldaliaiGGdgtlkiakelae....kg.glkvvGvPktiDnDleatdvtfGfdtaveiatealdrlkttaesh..eRvlvvevmGReaGwiaLesGlagg.adviliPevpfdi...devvekveereergkkfaivvvaegakpkegelalkekakdaageerlgGigkalaeeiekrlgke.aRavvL....ghlqRGgspsafDRvlatrfgvkavdlveegkfgkmvalkgedivavsiee 323
                 +++t GG cpGLn v+r +v++  ++yg +  v gir gy+G+ + d  k  +l++e v +i ++GGt+lgssr+          +ki + lk++ + +l +iGGdgt + a +++e    kg  + v G+PktiDnD+   d +fGf++ave+a  a+ + k  a     + + vv +mGR+aG+ia ++ +a+g  d+ l+Pevp+ +   +    ++ +r +  + +a++vvaega ++      ++ + da g+ +l  ig+ + +++e+  +++ a a+v     +++ R + + a D +  +++g +av+   +g  g  v l ++++v ++i e
  MMETSP1061-20121228|6103_1 178 AIVTCGGLCPGLNNVVREIVNTLYSSYGIDgvVWGIRGGYRGFWDFDNYKpvQLTTELVANIHHEGGTVLGSSRGGFDL------EKILDFLKSKKITCLFVIGGDGTHRGAFRIHEgcmeKGmNVAVAGIPKTIDNDVDYIDRSFGFESAVEAAQVAIRSAKIEAICNmpNGIGVVKLMGRSAGFIAAHATMASGdVDLCLVPEVPIVLkgqQGCLPHIMRRVKD-QGYAVIVVAEGAGEELL---GTSAEIDAGGNRKLPPIGDFMKKQVEEYFKENgAVATVKyidpSYTVRSVPANAQDSLYCMQLGQNAVHGAMAGFTGFSVGLCNNRMVFIPIPE 508
                 79********************999999876688*********995554412478899****************97544......689********************998888754222154246689******************************97777665542289********************86638*********9872223466788877777.99**********88776...5667889999*****************99865144444333347889*****************************************999976 PP

>> TIGR02482  PFKA_ATP: 6-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.0   0.8   1.7e-35   1.1e-32       3     222 ..     178     408 ..     176     425 .. 0.80
   2 !    6.8   0.0   0.00094      0.65     256     300 ..     465     509 ..     435     510 .. 0.86

  Alignments for each domain:
  == domain 1    score: 111.0 bits;  conditional E-value: 1.7e-35
   TIGR02482   3 giLtsGGDapGmnaairavvkta.laqgle..vygirkGykGlie...geivkleskavseiiekGGtilksaRleeFkkeevrekavenlkklgiealvviGGdGsyaGakklae.....eggikviglPgtiDnDiagtdytiGfDtalntileavd..kirDtatsheraflvevmGreagdlallaaiatg.aeiiivpeaeldieelaekvkeqae..kkkkksiiivaee 222
                 +i+t GG +pG+n+ +r +v t   ++g++  v gir Gy+G+ +    + v+l+++ v++i ++GGt+l+s+R   F      ek +++lk ++i  l viGGdG+++Ga +++e       ++ v g+P tiDnD+   d + Gf+ a+ +   a+   ki    +  + + +v+ mGr+ag++a +a++a+g  +  +vpe+   ++  +  + + ++  k++  ++i+vae+
  MMETSP1061-20121228|6103_1 178 AIVTCGGLCPGLNNVVREIVNTLySSYGIDgvVWGIRGGYRGFWDfdnYKPVQLTTELVANIHHEGGTVLGSSRG-GFDL----EKILDFLKSKKITCLFVIGGDGTHRGAFRIHEgcmekGMNVAVAGIPKTIDNDVDYIDRSFGFESAVEAAQVAIRsaKIEAICNMPNGIGVVKLMGRSAGFIAAHATMASGdVDLCLVPEVPIVLKGQQGCLPHIMRrvKDQGYAVIVVAEG 408
                 79******************98624678876589********98621145678999******************6.5766....56799**********************99986333213468899************************999999633777888888999********************983589999**98877655444444333004455689999987 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00094
   TIGR02482 256 sPsafdRvlasrlgakaveallegksgvmigleenkivavpleea 300
                   +a d +  ++lg +av   + g +g  +gl +n++v  p++e 
  MMETSP1061-20121228|6103_1 465 PANAQDSLYCMQLGQNAVHGAMAGFTGFSVGLCNNRMVFIPIPEL 509
                 457899999*********************************985 PP

>> TIGR02477  PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.0   0.1   2.8e-24   1.9e-21      45     308 ..     152     408 ..     117     421 .. 0.81
   2 !    5.1   0.0    0.0021       1.4     414     451 ..     459     496 ..     433     502 .. 0.82

  Alignments for each domain:
  == domain 1    score: 74.0 bits;  conditional E-value: 2.8e-24
   TIGR02477  45 pntyglPlvklvkgeakskeskalkvGvilsGgqapGGHnvilGlfdalkkl.nkeskLlGFlggpeGllk...nkyveltkelikeyrntGGfdiigsgrtkieteeqfekaletvkklkldglviiGGddsntnaalLAeyfakkklkikviGvPktidgDLknklietsfGFdtackvyseligniarDalsa.kkyyhFiklmGrsashiaLecaLqt.hPnvcliseevaekkltlkdvveeivdvivkRaakgknfgvvliPeG 308
                 + ty+  +v+  + ++   + k+ +  ++ +Gg  pG  nv+  + ++l +    +  ++G +gg +G+ +    k v+lt+el+++ + +GG  ++gs+r       ++ek+l+  k++k+  l +iGGd     a  + e  ++k++++ v G+Pktid D+  ++i+ sfGF++a+      i   + +a+    +    +klmGrsa +ia  +++ +   ++cl+ e         +         i+ R  k++ ++v+++ eG
  MMETSP1061-20121228|6103_1 152 QPTYSRAYVRAGPRKELHFDPKHTNAAIVTCGGLCPGLNNVVREIVNTLYSSyGIDGVVWGIRGGYRGFWDfdnYKPVQLTTELVANIHHEGG-TVLGSSRGGF----DLEKILDFLKSKKITCLFVIGGDGTHRGAFRIHEGCMEKGMNVAVAGIPKTIDNDV--DYIDRSFGFESAVEAAQVAIRSAKIEAICNmPNGIGVVKLMGRSAGFIAAHATMASgDVDLCLVPEV-PIVLKGQQGCL----PHIM-RRVKDQGYAVIVVAEG 408
                 55777777777777777778899999**********************97651678999*********98622145699**************.69****9876....68899**************************************************7..79************99999999999988651567889***************998725688998773.22222222222....2233.4445667777777777 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0021
   TIGR02477 414 YegRsalPsnFDsdYcyaLGytaalllangltGylsti 451
                 Y  Rs    + Ds Yc +LG +a++  ++g+tG+ + +
  MMETSP1061-20121228|6103_1 459 YTVRSVPANAQDSLYCMQLGQNAVHGAMAGFTGFSVGL 496
                 66777666668**********************97665 PP

>> TIGR02478  6PF1K_euk: 6-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   2.7   2.1e-22   1.4e-19       3     254 ..     177     412 ..     174     422 .. 0.77

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 2.1e-22
   TIGR02478   3 iavltsGGDaqGmnaavravvraaia...vgckvylireGyeGlvdGGdlik..elkWedvsgilslGGtliGtarckefrereGrlkaaknlvkkgidalvviGGdGsLtgadlfreeWsslleeLveegkiteeqakeyreLtivGlvgsiDnDlvgtDatiGadsalhriieavDaissta..ashqrafvvevmGrhCGyLallaaiatg.aDyvfiPeappeee.WedelckklkrnrkkgkrktivivaeGaids 254
                  a++t GG ++G+n +vr +v +  +    +  v+ ir Gy+G+ d  d+ k  +l+ e v++i ++GGt++G++r     e     k    l +k+i+ l viGGdG   ga  fr               i+e  +++  ++ ++G+   iDnD+   D + G +sa++    a+ + +  a  +  +   vv +mGr  G++a  a++a+g  D  ++Pe+p   +  +  l ++++r++++g   ++++vaeGa ++
  MMETSP1061-20121228|6103_1 177 AAIVTCGGLCPGLNNVVREIVNTLYSsygIDGVVWGIRGGYRGFWDF-DNYKpvQLTTELVANIHHEGGTVLGSSRGGFDLE-----KILDFLKSKKITCLFVIGGDGTHRGA--FR---------------IHEGCMEKGMNVAVAGIPKTIDNDVDYIDRSFGFESAVEAAQVAIRSAKIEAicNMPNGIGVVKLMGRSAGFIAAHATMASGdVDLCLVPEVPIVLKgQQGCLPHIMRRVKDQG--YAVIVVAEGAGEE 412
                 58999999999999999999986443211456799999999999998.6665225667889999999999999999764443.....45677788999999999999999887..44...............666777888999999999999999999999999999999988888765555500555677899999999999999999997537999999999887735556666666555555..7899999999765 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.025        17      92     127 ..     188     224 ..     174     235 .. 0.81
   2 !    6.1   0.1     0.002       1.4      14      91 ..     284     361 ..     271     374 .. 0.85
   3 ?    0.5   0.0       0.1        69       3      51 ..     378     427 ..     376     449 .. 0.74

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.025
   TIGR02415  92 pileiteeeleklyn.vnvkgvlfGiqaaaekfkklk 127
                  ++++  e +++ly+   + gv++Gi+   + f +++
  MMETSP1061-20121228|6103_1 188 GLNNVVREIVNTLYSsYGIDGVVWGIRGGYRGFWDFD 224
                 578899999****97368*********9999987765 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.002
   TIGR02415  14 kaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvt 91 
                   i e   + G++vava +++   +++    +++g+++ +  + v+ +s+  ea+ +  + +G ++++   aG  + +
  MMETSP1061-20121228|6103_1 284 FRIHEGCMEKGMNVAVAGIPKTIDNDVDYIDRSFGFESAVEAAQVAIRSAKIEAICNMPNGIGVVKLMGRSAGFIAAH 361
                 4678888999*********99999999888899***************************************976655 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.1
   TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavava.dlneetaketakelkekgtka 51 
                  +v  + qG    i +r+ + G+av+v+ +   e++  t  e+++ g++ 
  MMETSP1061-20121228|6103_1 378 PIVLKGQQGCLPHIMRRVKDQGYAVIVVaEGAGEELLGTSAEIDAGGNRK 427
                 578888999999***********987651555788888888887777665 PP

>> TIGR01508  rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.9e-05     0.054     103     146 ..     234     277 ..     227     303 .. 0.90
   2 ?   -3.5   0.0       1.6   1.1e+03      47      61 ..     449     463 ..     448     469 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.9e-05
   TIGR01508 103 ekveelekkgvevvkfgeervdLeklldaleskgvrrllveGGG 146
                 e v +++++g +v    ++  dLek+ld+l+sk +  l+v GG 
  MMETSP1061-20121228|6103_1 234 ELVANIHHEGGTVLGSSRGGFDLEKILDFLKSKKITCLFVIGGD 277
                 67888999999*****************************9984 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 1.6
   TIGR01508  47 igtvlaDdPsLtvkk 61 
                 + tv+  dPs tv++
  MMETSP1061-20121228|6103_1 449 VATVKYIDPSYTVRS 463
                 7899999*****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 2290.65
//
Query:       MMETSP1061-20121228|6105_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 455.36
//
Query:       MMETSP1061-20121228|6104_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-72  240.5   0.1    9.9e-72  240.1   0.1    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    7.8e-19   65.4   4.1    1.1e-18   64.9   2.9    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0018   16.2   0.4     0.0031   15.4   0.3    1.3  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.1   0.1   7.3e-75   9.9e-72       1     350 [.      27     361 ..      27     364 .. 0.92

  Alignments for each domain:
  == domain 1    score: 240.1 bits;  conditional E-value: 7.3e-75
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrrrskarrgedlevelelsleeavkGvekeielerkekCetCkGsGakkgsklktCktCgGtGqvrkqqgtllgffqs.qqtCseCkGeGkiikekCkeCkGkgrvkekkkievkiPaGvedgerlrvegkGeagenggesGdLyvevkvkehkiferegndllvevpisfvqailgeeievptleg.kvklkipagtqsgevlrlkgkGvkklkskkrGdllvkvkvevPkklskeekelleel 350
                 d+Y +Lg+s+ A+++eikkAYr+++ ++HPD+nk ++ a +kf ein+Aye L deekr+ YDq g++gl+++++++++g         g+  d fe+ffg ggg ++rr++++r  ++ + lel+le+++ G++ e+++ r+  C +        +  +k  ++C+G G+ +++q+   gf+q+ qq  ++C  +Gk+   +C+eCk+++ + ek +++v+  +G++ ge +  e+  + ++ g ++GdL   v  keh+ ++r+g++l+++ +i +v+a  g +++++ l+g + +++i+  ++ +evlr+ gkG+++++++++Gdl+++++v++P+ ls+++k++l+++
  MMETSP1061-20121228|6104_1  27 DFYRLLGISRGANKKEIKKAYRQKSLEFHPDKNK-DEGAADKFAEINRAYEALMDEEKRQIYDQHGEEGLKQHEQRSAGG-------GGGGGFDPFEQFFGFGGGGRQRRQEEQRTPNVDIPLELTLEQMYSGATFEVSYIRQVLCLK-------WEMCMKNAPECQGPGVRVRRQQIAPGFVQQvQQRDDRCVAHGKMWYPNCSECKSQTET-EKIELTVDAFKGIRPGEAITFEDVAD-EKPGYKAGDLNFIVVEKEHPDYHRDGDNLYMTESIPLVDALTGFSLTLKQLDGvEFTITIDDIVECDEVLRIPGKGMPRRSGRGHGDLFMTFEVDFPEALSSDQKNKLRDI 361
                 9*********************************.99**********************************975553332.......2344459*******88887777*************************************75.......456688899******9999999888888762567789****************99865.67899******************999.68999*******************************************************************************************************986 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   2.9   7.9e-22   1.1e-18       3      74 ..      27      98 ..      25     103 .. 0.96

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 7.9e-22
   TIGR03835  3 DyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDre 74
                D+y  Lgi+r a+++eikka+r+ +  +hPD+nk+  aa+ faein a++ L + +kr+ yD++G +G+ + 
  MMETSP1061-20121228|6104_1 27 DFYRLLGISRGANKKEIKKAYRQKSLEFHPDKNKDEGAADKFAEINRAYEALMDEEKRQIYDQHGEEGLKQH 98
                9*******************************************************************9865 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.3   2.3e-06    0.0031       5      54 ..      40      85 ..      38     102 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 2.3e-06
   TIGR00714  5 ekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRa 54
                +k ++k yr+   ++HPD  k++ e   a  + +e+N Ay+ L d  kR 
  MMETSP1061-20121228|6104_1 40 KKEIKKAYRQKSLEFHPD--KNKDE--GAADKFAEINRAYEALMDEEKRQ 85
                678999************..66666..8899************9988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 1550.87
//
Query:       MMETSP1061-20121228|6110_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 553.10
//
Query:       MMETSP1061-20121228|6112_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 295.66
//
Query:       MMETSP1061-20121228|6116_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.35
# Mc/sec: 497.79
//
Query:       MMETSP1061-20121228|6117_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 401.71
//
Query:       MMETSP1061-20121228|6115_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-39  132.1   1.1    1.5e-19   68.1   0.3    3.2  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.3e-34  116.9   1.0    7.5e-18   62.7   0.0    3.3  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.4e-33  114.0   0.4    3.2e-11   40.9   0.0    4.1  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.8e-33  114.1   0.0    6.9e-17   59.4   0.0    2.8  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.8e-32  109.7   0.3    9.7e-14   49.4   0.1    4.1  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.6e-32  109.2   0.1    3.4e-18   63.8   0.0    3.3  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    7.5e-32  108.2   5.2    9.3e-16   55.7   1.0    3.9  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.4e-30  103.6   0.5    1.2e-17   62.1   0.0    3.3  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    2.3e-29  100.5   0.9    1.8e-14   51.7   0.0    3.5  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    7.1e-29   98.7   0.0    5.1e-14   50.2   0.0    3.3  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    9.6e-29   98.3   2.6    1.3e-10   39.0   0.0    3.9  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      1e-28   98.2   0.1    7.6e-09   33.2   0.0    4.1  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.4e-27   94.7   0.3      6e-17   59.7   0.0    3.3  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
      9e-27   91.5   0.3    3.2e-15   53.3   0.0    3.2  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.3e-26   91.2   0.0    3.1e-11   40.9   0.0    3.2  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    2.4e-26   90.7   0.5    7.1e-13   46.6   0.0    3.8  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.6e-26   90.3   0.1    1.3e-14   51.8   0.0    3.2  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    4.7e-26   89.4   5.7    7.5e-12   42.9   1.1    4.0  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    9.1e-26   88.6   0.4    7.8e-13   46.3   0.0    3.7  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    1.2e-25   88.2   0.2      3e-14   50.6   0.0    3.3  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.6e-25   87.9   0.5    5.9e-11   40.2   0.0    3.4  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.7e-25   86.7   0.1    2.2e-08   31.9   0.0    4.0  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    7.9e-25   85.3   0.3      2e-08   31.1   0.0    4.0  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
      9e-25   85.1   0.5    2.3e-06   24.3   0.0    4.1  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    6.1e-24   82.6   0.1    8.6e-13   46.1   0.0    3.6  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    3.1e-23   80.3   0.0    8.1e-12   42.9   0.0    3.5  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    4.8e-23   79.7   1.0    1.6e-09   35.5   0.0    4.0  4  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    6.5e-23   79.4   0.1    3.4e-07   28.0   0.0    4.1  4  TIGR00960 3a0501s02: type II secretory pathway family protein
    3.3e-21   73.4   0.2    3.6e-11   40.2   0.1    3.8  3  TIGR00955 3a01204: pigment precursor permease
    6.5e-21   72.4   0.1    7.2e-11   39.4   0.0    3.2  3  TIGR01288 nodI: nodulation ABC transporter NodI
    2.1e-20   70.9   0.4    4.3e-09   33.8   0.0    3.4  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.2e-20   70.5   0.8    7.4e-12   42.4   0.0    3.4  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.8e-20   69.4   0.1    2.6e-09   34.0   0.0    3.2  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    5.6e-20   69.6   0.0    4.1e-09   34.0   0.0    3.5  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    6.8e-20   69.5   0.1    1.5e-08   32.5   0.0    3.5  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    7.7e-20   69.1   4.3    2.8e-12   44.3   0.3    3.4  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    3.1e-19   66.8   0.1    7.5e-10   35.7   0.0    3.1  3  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.2e-18   65.4   1.8      2e-07   28.6   0.1    3.5  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    5.1e-18   62.7   0.0    3.1e-09   33.7   0.0    4.0  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.4e-17   61.0   0.0    1.5e-09   34.5   0.0    3.3  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.4e-17   61.4   0.9    4.5e-08   30.0   0.0    4.0  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.7e-17   60.2   0.8    4.1e-06   23.8   0.0    3.8  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    9.7e-16   55.8   0.0    5.5e-09   33.7   0.0    3.3  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    3.3e-15   53.3   0.1     0.0018   14.6   0.0    4.1  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    5.3e-15   52.8   0.6      2e-07   27.8   0.0    3.0  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      1e-14   51.6   1.7    0.00013   18.2   0.0    3.9  4  TIGR00958 3a01208: antigen peptide transporter 2
    1.4e-14   51.9   5.0    1.5e-07   28.9   1.2    4.0  3  TIGR01978 sufC: FeS assembly ATPase SufC
    2.9e-13   45.4   0.2    5.4e-05   18.0   0.0    3.0  3  TIGR01257 rim_protein: rim ABC transporter
    5.1e-13   45.9   0.0    2.2e-06   24.0   0.0    2.2  2  TIGR00630 uvra: excinuclease ABC subunit A
    7.5e-13   45.4   1.3    0.00045   16.4   0.0    3.9  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
      1e-12   44.3   0.1    0.00017   17.1   0.0    4.0  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.6e-12   44.7   1.2    3.9e-06   23.6   0.0    3.7  4  TIGR01192 chvA: glucan exporter ATP-binding protein
    2.6e-11   40.9   0.5    9.6e-05   19.3   0.1    3.7  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      4e-10   36.7   1.2     0.0021   14.5   0.0    3.8  4  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.7e-09   33.5   0.2    0.00011   17.5   0.0    2.1  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.6e-08   29.6   1.0    0.00018   16.9   0.0    3.2  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.7e-06   25.6   5.1    3.6e-06   24.5   3.5    1.5  1  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
    1.6e-05   22.1   0.0      0.011   12.8   0.0    2.3  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
    3.4e-05   19.5   0.2     0.0018   13.8   0.0    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    0.00032   18.6   0.2       0.15    9.8   0.0    2.4  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    0.00038   18.4   8.4    0.00079   17.4   5.8    1.4  1  TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
    0.00039   17.0   9.7    0.00063   16.3   6.7    1.2  1  TIGR04105 FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
     0.0039   15.1   4.0     0.0073   14.2   2.8    1.4  1  TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B
     0.0063   13.8   0.1      0.019   12.2   0.0    1.8  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
     0.0072   13.0   8.0      0.011   12.4   5.5    1.2  1  TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A
     0.0076   14.2   0.1     0.0076   14.2   0.1    2.6  2  TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific
  ------ inclusion threshold ------
      0.012   13.3   0.9        1.4    6.5   0.2    2.5  2  TIGR00152 TIGR00152: dephospho-CoA kinase
      0.014   11.8   0.0      0.093    9.0   0.0    2.1  2  TIGR00602 rad24: checkpoint protein rad24
      0.015   12.7   1.6       0.02   12.3   0.1    1.9  1  TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
      0.024   10.9   0.2          7    2.7   0.0    3.4  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      0.027   12.2   0.7      0.068   10.9   0.0    2.0  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
      0.029   10.7   0.0      0.052    9.9   0.0    1.3  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
      0.057   10.5   9.0        0.1    9.7   6.2    1.3  1  TIGR02700 flavo_MJ0208: archaeoflavoprotein, MJ0208 family
      0.064    9.4  10.7      0.092    8.8   7.4    1.2  1  TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
      0.097   10.1   8.1        0.3    8.6   5.6    1.8  1  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I
       0.16    8.2   2.4       0.12    8.7   0.1    1.8  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
       0.18    8.5   7.4       0.34    7.7   5.1    1.3  1  TIGR02912 sulfite_red_C: sulfite reductase, subunit C
        0.4    6.9   7.3       0.65    6.2   5.1    1.2  1  TIGR03287 methan_mark_16: putative methanogenesis marker 16 metalloprotein
       0.49    8.1   6.2       0.99    7.1   4.3    1.4  1  TIGR02060 aprB: adenylylsulfate reductase, beta subunit
       0.53    7.6   8.4          1    6.7   5.8    1.4  1  TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family
        1.4    6.3  11.5      0.019   12.3   0.3    2.5  2  TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein


Domain annotation for each model (and alignments):
>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.3     3e-21   1.5e-19      25     212 ..     114     315 ..     110     330 .. 0.79
   2 !   60.1   0.0   8.3e-19   4.2e-17      23     225 ..     397     595 ..     378     603 .. 0.83

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 3e-21
   TIGR03873  25 PaGaltgllGPnGsGkstllrllaGllapdaGev..dlagad..lkalsrrararrvalveqdsdaevplsvrdvv...alGriP..hrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.....aegvtvvvalhdlnlaasvcdhvvvldg 212
                  +G++ gl+G nG Gkst l++laG  +p+ G+    ++ ++  ++      +     ++e   +a ++++  d++   + G +    + +   +  e  +v   a+  +el++l +r++  lsGGe qr  +a    q   + ++deP  +ldv+ +l    ++re+      a++  v+v  hdl+    ++d v vl g
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLGRYdnPPDWEEilVHFRGSELQNYFTQILEDRMKATMKMQYVDAIprvLRGTVKdiLKDRDDRSELEGRDVYGWAIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREILvntkdADRRYVIVVEHDLAVLDYLSDFVCVLYG 315
                 479******************************9432344453233333344455566788888888888877775211333332111222223333556788889*************************************************************988999999999******************99965 PP

  == domain 2    score: 60.1 bits;  conditional E-value: 8.3e-19
   TIGR03873  23 taPaGaltgllGPnGsGkstllrllaGllapda.GevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGr..v.vaaGppaevl 225
                 ++   ++  llG nG+Gk+t++r+laGl ++d+  +++ +g d +a ++ +  ++v+   q+ + + + + r+ +   ri  r ++        + v+ ++    ++s+ d  +++lsGGe qr  ++ al +   + l+deP  +ld + +++  ++++  + +++ t  v  hd+ +a+ ++d+vvv + Gr  + ++a  p+++l
  MMETSP1061-20121228|6115_1 397 EFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEqEKLQKDGYDYEASQAGVPDLNVSYKPQKISPKFKGTTRQLL-HKRI--RDAYV-----HPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFImHSKKTAFVVEHDFIMATYLADRVVVYH-GRpgIeATATAPQSLL 595
                 455677889*******************998751678******************************99999864.3454..55554.....345888999999*******************************************************98764788999*****************9975.4423313344455555 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   3.1e-05    0.0016      19      49 ..     116     146 ..     112     148 .. 0.93
   2 !   35.3   0.0   3.3e-11   1.6e-09     109     197 ..     220     313 ..     211     323 .. 0.86
   3 !   62.7   0.0   1.5e-19   7.5e-18      18     201 ..     400     581 ..     391     629 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.1e-05
   TIGR01188  19 gevfglLGPnGAGKtttikmLttllkPdsGt 49 
                 g+v+gl+G nG GK+t +k+L++  kP+ G+
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 89************************99886 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 3.3e-11
   TIGR01188 109 lelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtr....raiwdlieelkke.gvtilltthyleeadkladrvaii 197
                 +e+ elk+ ++++++ +sgG  +r  +aa  i++ +v+  DEP + LD++ r    ++i +++ + k++    +++  h+l   d l+d v ++
  MMETSP1061-20121228|6115_1 220 IEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRltaaHMIREILVNTKDAdRRYVIVVEHDLAVLDYLSDFVCVL 313
                 68899********************************************9872222345555555666646789***************99886 PP

  == domain 3    score: 62.7 bits;  conditional E-value: 1.5e-19
   TIGR01188  18 egevfglLGPnGAGKtttikmLttllkPdsGt.arvaGyDvvrepdevRr.sigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGk 201
                   e++ lLG nG GKtt ++mL++l k d+ +  +  GyD     + v   +++  pqk s   +  ++    l+ ++ +    ++ + ++++++ + +    d+ v+ +sgG  +rl ++ +l +  +v+ +DEP   LD++ r +  ++i+ +  + ++t ++  h++  a  ladrv +  +G+
  MMETSP1061-20121228|6115_1 400 DSEIIVLLGENGTGKTTFVRMLAGLQKSDEQEkLQKDGYDYEASQAGVPDlNVSYKPQKISPKFK--GTTRQLLHKRIRDA--YVHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHsKKTAFVVEHDFIMATYLADRVVV-YHGR 581
                 679************************9986515678***9888888864266777777776655..55555778888775..45667899*********************************9999*************************987766********************965.5554 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00085     0.043      24      54 ..     116     146 ..     105     155 .. 0.90
   2 !   40.9   0.0   6.4e-13   3.2e-11     118     199 ..     219     305 ..     202     312 .. 0.85
   3 !   17.0   0.0   1.3e-05   0.00067       9      57 ..     386     434 ..     378     452 .. 0.82
   4 !   39.8   0.0   1.4e-12   6.9e-11     113     203 ..     483     575 ..     469     577 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00085
   TIGR03608  24 GelvaivGesGsGKstlLnilgllekkdsgk 54 
                 G+++ +vG+ G GKst L il+   k++ g+
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 999*******************999988776 PP

  == domain 2    score: 40.9 bits;  conditional E-value: 6.4e-13
   TIGR03608 118 vlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknr....eevlellkelkeeg.ktiiivtHdpevaek 199
                 ++e  +l++ ++++i  lsgGe qR a+a   ++ s++ + DEP + LD k+r    +++ e+l + k+++ + +i+v Hd +v + 
  MMETSP1061-20121228|6115_1 219 AIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRltaaHMIREILVNTKDADrRYVIVVEHDLAVLDY 305
                 567778999****************************************9986444478889999999876257999****999765 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 1.3e-05
   TIGR03608   9 kdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvil 57 
                 k+k il+    ++ + e++ ++Ge G+GK+t++ +l+ l+k d+++ + 
  MMETSP1061-20121228|6115_1 386 KEKFILHVDGGEFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQEKLQ 434
                 567777777778889999***********************99887554 PP

  == domain 4    score: 39.8 bits;  conditional E-value: 1.4e-12
   TIGR03608 113 kkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellke.lkeegktiiivtHdpevaek.adrv 203
                 + + +v++ + +e+ +++ +  lsgGe qR+a+  +l k++++ l DEP + LD+++r +  +++k  + ++ kt  +v Hd  +a   adrv
  MMETSP1061-20121228|6115_1 483 QFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRfIMHSKKTAFVVEHDFIMATYlADRV 575
                 55677899999***********************************************999999988346778999******98876426666 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.4   0.0   3.7e-16   1.9e-14     346     523 ..     114     306 ..      95     312 .. 0.76
   2 !   59.4   0.0   1.4e-18   6.9e-17     346     527 ..     399     576 ..     357     578 .. 0.78

  Alignments for each domain:
  == domain 1    score: 51.4 bits;  conditional E-value: 3.7e-16
   TIGR02857 346 epgelvalvGaSGaGKstllklllgfvepteGailv...........ngaelaeldad......swrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDae...teaevlealr...elaegrtvllvaHrlalaela 523
                 +pg++++lvG+ G GKst lk+l+g  +p+ G+               g+el++  ++      +   ++ +v   P ++ gtv++ i   r d se e +++   a     v++l++       ++ + LSgG+ qR a+A   ++++++ ++DEP + LD +   t+a++++++    + a++r v++v H+la++  +
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLGRYDNppdweeilvhfRGSELQNYFTQiledrmKATMKMQYVDAIPRVLRGTVKD-ILKDRDDRSELEGRDVYGWAIE---VAELKHLQ----NREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKqrlTAAHMIREILvntKDADRRYVIVVEHDLAVLDYL 306
                 79**************************9999877667777777799666665544332221223344689*************75.7778888888887777655433...44444333....455689********************************873335666666654111335889********9988765 PP

  == domain 2    score: 59.4 bits;  conditional E-value: 1.4e-18
   TIGR02857 346 epgelvalvGaSGaGKstllklllgfvepte.GailvngaelaeldadswrkqiawvpQkPl.lfegtvaenirlarkdaseaevkealera.gldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlala.eladkiv 527
                    e+++l+G+ G GK+t +++l+g+ + +e ++++ +g + ++ +a     ++++ pQk    f+gt ++          ++ +++a  +   + +++k  p  +e+ i+++ + LSgG+ qRla++ al ++a++ l+DEP a LD+e+  +  + +++++  +++t ++v H+  +a  lad++v
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQKSDEqEKLQKDGYDYEASQAGVPDLNVSYKPQKISpKFKGTTRQ--------LLHKRIRDAYVHPqFVSDVMK--PLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFImhSKKTAFVVEHDFIMAtYLADRVV 576
                 567899*********************97761455557777777777777777999999733134455443........333344444433303445555..45699*****************************************************9866699********9766515678777 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0     3e-05    0.0015      27      58 ..     115     146 ..     112     154 .. 0.91
   2 !   34.2   0.0   8.4e-11   4.3e-09     127     216 ..     219     314 ..     195     324 .. 0.88
   3 !   49.4   0.1   1.9e-15   9.7e-14      27     216 ..     400     579 ..     395     584 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3e-05
   TIGR03411  27 egelrviiGpnGaGkttllDvitGktrpdeGs 58 
                 +g++  ++G nG Gk+t l +++Gk +p+ G+
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 5777889*********************9996 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 8.4e-11
   TIGR03411 127 vleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel......akersvvvvehDmefvrelaekvtvlh 216
                 ++e+ +L++ ++++  +Ls G+ q+  i+   +q +++ + DeP + +  + + + a++++e+      a++r v+vvehD+  ++ l++ v vl 
  MMETSP1061-20121228|6115_1 219 AIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIlvntkdADRRYVIVVEHDLAVLDYLSDFVCVLY 314
                 678899******************************************************99855444446789*******************995 PP

  == domain 3    score: 49.4 bits;  conditional E-value: 1.9e-15
   TIGR03411  27 egelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlske..ekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellke..lakersvvvvehDmefvrelaekvtvlh 216
                 + e+ v++G nG Gktt++ +++G  ++de + l k+    + ++a +  l ++ k qk s               k + ++ +ll +r++++  + + +++v++ +++e+  d+  ++Ls G+ q+L i++ l + +++ l+DeP a + +e + + a+++k+  ++++++  vvehD      la++v v h
  MMETSP1061-20121228|6115_1 400 DSEIIVLLGENGTGKTTFVRMLAGLQKSDEQEKLQKDGYDYEASQAGVPDLNVSYKPQKIS--------------PKFKGTTRQLLHKRIRDAyvHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRfiMHSKKTAFVVEHDFIMATYLADRVVVYH 579
                 67999***********************988777666644555666666666666666544..............44444444444444444311567899**************************************************************84457899*******************9987 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0029      0.15      21      53 ..     115     146 ..      94     150 .. 0.83
   2 !   32.2   0.0   2.8e-10   1.4e-08     116     205 ..     220     313 ..     196     324 .. 0.85
   3 !   63.8   0.0   6.7e-20   3.4e-18      19     206 ..     397     579 ..     380     604 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0029
   TIGR02142  21 pgkgvtalFGrsGsGktslirliaGLtrpdege 53 
                 pg +v +l G+ G Gk++ ++++aG  +p+ g+
  MMETSP1061-20121228|6115_1 115 PG-QVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 56.799**********************99887 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 2.8e-10
   TIGR02142 116 ielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilP....yLerlsaelkiPilyvsHsldevarladrvvvl 205
                 ie+  ++hL +R+ + LsGGe qR ai+   + + ++ ++DeP + LD k++          L + ++  +  ++ v H+l  +  l+d v vl
  MMETSP1061-20121228|6115_1 220 IEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHmireILVNTKDADRRYVIVVEHDLAVLDYLSDFVCVL 313
                 78999********************************************99966544000155555666677899999*999999999999988 PP

  == domain 3    score: 63.8 bits;  conditional E-value: 6.7e-20
   TIGR02142  19 elpgkgvtalFGrsGsGktslirliaGLtrpdeg.eivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvle 206
                 e   ++++ l G+ G+Gkt+++r++aGL++ de  +++ dg  ++ s++++       +v+y  q+ +     + r+ L+  +++a ++ +      v++ L+ie +++  ++ LsGGe qR ai+ Al    ++ l+DeP a LD++++ +    ++r   + k     v H++   + ladrvvv +
  MMETSP1061-20121228|6115_1 397 EFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQeKLQKDGYDYEASQAGV----PDLNVSYKPQKISPKFKGTTRQLLHKRIRDAYVHPQ--FVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYH 579
                 45567999**********************987526889999999998865....345677777776655556678888888888888875..45679******************************99999****************************************************9864 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   1.0   1.8e-17   9.3e-16      18     188 ..     116     301 ..     112     303 .. 0.80
   2 !   47.1   0.1   7.7e-15   3.9e-13      15     187 ..     398     565 ..     390     568 .. 0.80

  Alignments for each domain:
  == domain 1    score: 55.7 bits;  conditional E-value: 1.8e-17
   TIGR01166  18 gevlallGanGaGkstlllhlnGllrPksGk...........vlldGeeldysrkgllelrkkvalvlqdpdd..qlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpa....GaeqlleilrklreeG.ktvvisthdvd 188
                 g+vl+l+G+nG Gkst l+ l+G  +P+ G+           v + G+el+    ++le r k ++ +q  d   +++  +v+ d+         se e + +   a+++ ++++l++r +++lsgGe +r aia+  +  +dv ++deP++ ld +     a++++eil + +++  + v++  hd++
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNLGRydnppdweeilVHFRGSELQNYFTQILEDRMKATMKMQYVDAipRVLRGTVK-DILKDRD--DRSELEGRDVYGWAIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKqrltAAHMIREILVNTKDADrRYVIVVEHDLA 301
                 89***************************975555555555567789999988889999999999999876642277887775.4433332..3566667777889*******************************999***************8722224678888888877765156888999976 PP

  == domain 2    score: 47.1 bits;  conditional E-value: 7.7e-15
   TIGR01166  15 vergevlallGanGaGkstlllhlnGllrPk.sGkvlldGeeldysrkgllelr.....kkvalvlqdpddqlfaadvdedvafgplnlGlseaeve.rrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklr.eeGktvvisthdv 187
                 ++ +e ++llG+nG+Gk+t++++l+Gl +   + k+  dG + + s+ g+ +l      +k++  ++ +  ql+  ++             ++a v+ + v++ ++ + i+ + ++ ++ lsgGe +r+ai  a+   +dv l+deP+a ld++ + + +++++++  ++ kt  +  hd 
  MMETSP1061-20121228|6115_1 398 FTDSEIIVLLGENGTGKTTFVRMLAGLQKSDeQEKLQKDGYDYEASQAGVPDLNvsykpQKISPKFKGTTRQLLHKRI-------------RDAYVHpQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFImHSKKTAFVVEHDF 565
                 567899*********************99751679999**99999999887653111114455555555555555554.............555565256999************************************************************996515556677777875 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   0.00013    0.0064      25      56 ..     115     146 ..      96     151 .. 0.93
   2 !   23.9   0.0     1e-07   5.3e-06     115     204 ..     220     313 ..     203     345 .. 0.76
   3 !   62.1   0.0   2.3e-19   1.2e-17      23     206 ..     398     580 ..     382     605 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 0.00013
   TIGR00968  25 tGslvallGpsGsGkstllrviaGlekpdsGr 56 
                  G++ +l+G  G Gkst l+++aG  kp+ Gr
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 599*************************9997 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 1e-07
   TIGR00968 115 lelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrkl....hdevkvttvfvthdqeealevadrivvl 204
                 +e+ +l++l++r    lsGG+ qr a+a       +v ++dep + ld k r      +r++    +d  +   ++v hd +    ++d + vl
  MMETSP1061-20121228|6115_1 220 IEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIlvntKDADRRYVIVVEHDLAVLDYLSDFVCVL 313
                 68899***********************87777789**************99776666665411114444455666777776655566655555 PP

  == domain 3    score: 62.1 bits;  conditional E-value: 2.3e-19
   TIGR00968  23 vktGslvallGpsGsGkstllrviaGlekpd.sGrilleGrd..vtrvkvrdreiGfvfqhya.lfkhltvrdniafGleirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlek 206
                   + +++ llG  G+Gk+t++r++aGl+k d + ++  +G d  +++  v d ++ +  q+ +  fk  t r+     l+ r +d+    + v+++++ + +e + d+  + lsGG+ qr+a++ al    +v l+dep + ld++ r +  + ++++  + k t+ +v hd   a+ +adr+vv + 
  MMETSP1061-20121228|6115_1 398 FTDSEIIVLLGENGTGKTTFVRMLAGLQKSDeQEKLQKDGYDyeASQAGVPDLNVSYKPQKISpKFKG-TTRQL----LHKRIRDAYVHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYHG 580
                 4577899*********************9872567888998844678888899999998887624554.44443....44555566667788******************************************************************999**********************99863 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00057     0.029       9      40 ..     114     145 ..     112     149 .. 0.92
   2 !   33.2   0.0   1.6e-10   8.1e-09      84     193 ..     205     317 ..     164     333 .. 0.84
   3 !   51.7   0.0   3.5e-16   1.8e-14       9     192 ..     399     582 ..     391     589 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00057
   TIGR01184   9 kkgefislighsgcgkstllnliaglekptsg 40 
                 + g+ + l+g  g gkst l ++ag +kp  g
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLG 145
                 579999***********************987 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 1.6e-10
   TIGR01184  84 rdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgalda...ltree.lqekllkiveearvtvlmvthdvdealllsdrvvmltngpa 193
                  d+s+ e r++    ie+ +l++ +++++  lsgg  qr aia +     ++ ++dep   ld    lt  + ++e l++  + +r  v++v hd+    +lsd v +l    a
  MMETSP1061-20121228|6115_1 205 DDRSELEGRDVYGWAIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVkqrLTAAHmIREILVNTKDADRRYVIVVEHDLAVLDYLSDFVCVLYGT-A 317
                 46677889999999*****************************9988899************97333555541577788888889999*********999****99887533.3 PP

  == domain 3    score: 51.7 bits;  conditional E-value: 3.5e-16
   TIGR01184   9 kkgefislighsgcgkstllnliaglekpt.sgavilegkeite..pg.pdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngp 192
                  + e+i l+g  g gk+t++ ++agl+k   +  ++ +g + ++   g pd  v ++   + p         l  ++++       + + v++ ++ +++++  d  ++ lsgg  qr+ai+ al    ++ l+dep   ld+  r +  + + + + +++ t+ +v hd   a +l+drvv+    p
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQKSDeQEKLQKDGYDYEAsqAGvPDLNVSYKPQKISPKFKGTTRQ-LLHKRIRDA---YVHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYHGRP 582
                 56799*********************997615678888876543113348888888888888866544332.333444433...3456899*******************************************************************************************976655 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   7.1e-07   3.6e-05      25      56 ..     115     146 ..     110     160 .. 0.92
   2 !   23.0   0.0   2.3e-07   1.2e-05     111     171 ..     219     279 ..     200     297 .. 0.89
   3 !   50.2   0.0     1e-15   5.1e-14      22     172 ..     397     549 ..     378     568 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 7.1e-07
   TIGR01189  25 aGealvveGpnGiGKttLLRilaGLlkpesGe 56 
                 +G++l ++G nGiGK+t L+ilaG +kp+ G+
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 799*************************9997 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 2.3e-07
   TIGR01189 111 alekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaella 171
                 a+e ++L++l+++ ++ Ls G  +R+a+a   +++  +++ DEP   lD++   + a++++
  MMETSP1061-20121228|6115_1 219 AIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIR 279
                 788999*******************************************997666555555 PP

  == domain 3    score: 50.2 bits;  conditional E-value: 1e-15
   TIGR01189  22 elaaGealvveGpnGiGKttLLRilaGLlkpesGe.velndkel.aeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaa 172
                 e++  e++v+ G+nG+GKtt +R+laGL+k+++ e ++ ++ +  a q+  ++ ++ y   + + K + +++  L+   ++   + + v++ ++ + ++ + d  v++Ls G  +Rla++  l + a ++++DEP + lD e     a++++ 
  MMETSP1061-20121228|6115_1 397 EFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQEkLQKDGYDYeASQAGVPDLNVSYKPQKISPKFKGTTRQLLHKRIRDAYVHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKR 549
                 5677899***********************987651566665541556778999********999********99999999999999*********************************9999****************9985555544443 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.2     5e-12   2.5e-10      26     208 ..     114     302 ..      97     317 .. 0.72
   2 !   17.7   0.0   8.1e-06   0.00041      24      61 ..     397     434 ..     381     451 .. 0.80
   3 !   39.0   0.0   2.5e-12   1.3e-10     129     218 ..     488     577 ..     480     581 .. 0.94

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 5e-12
   TIGR02315  26 kkGelvaviGlsGaGkstllrsinrlveissg...........sillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkri....nkekgitvivnlHqvdl 208
                 ++G++++++G+ G Gkst l+ + +  +++ g            + ++g+e+++    ++ + r k +m +q  + i        vL g +   + lk    + + e +     ++e  +l++l+++    LsGG+ qR aia   +q +++ + DEP + LD k+  +  +++++i       +   viv  H++ +
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLGrydnppdweeiLVHFRGSELQNYF-TQILEDRMKATMKMQYVDAI------PRVLRGTVK--DILKDRDDRSELEGRDVYGWAIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIlvntKDADRRYVIVVEHDLAV 302
                 68*****************************9776666665444455556665443.34445566666666655555......557777654..445554555555555555667888899******************************************99766666666665221044455667776676654 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 8.1e-06
   TIGR02315  24 eikkGelvaviGlsGaGkstllrsinrlveissgsill 61 
                 e++  e+++++G+ G+Gk+t++r++ +l+++++ + l 
  MMETSP1061-20121228|6115_1 397 EFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQEKLQ 434
                 566789***********************987765443 PP

  == domain 3    score: 39.0 bits;  conditional E-value: 2.5e-12
   TIGR02315 129 lLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivg 218
                 +++ + +++  ++ +++LsGG+ qR+ai+ al + +++ l+DEP a LD ++  +  +++kr   +++ t+ v  H+  +a+  adr+v 
  MMETSP1061-20121228|6115_1 488 VMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVV 577
                 566778888999999************************************************************************995 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   0.00052     0.026      30      61 ..     115     146 ..     109     152 .. 0.92
   2 !   33.2   0.0   1.5e-10   7.6e-09     127     208 ..     221     306 ..     205     315 .. 0.82
   3 !   14.5   0.0     8e-05     0.004      26      59 ..     396     429 ..     369     444 .. 0.81
   4 !   33.1   0.0   1.7e-10   8.6e-09     125     217 ..     488     580 ..     475     582 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00052
   TIGR02211  30 kgelvaivGssGsGkstllhllggldkptsGe 61 
                  g+++++vG+ G Gkst l +l+g  kp  G+
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 588999********************999886 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 1.5e-10
   TIGR02211 127 ekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkkt....akkifelllelnkekntallvvthdlelakkl 208
                 e  +l++  n++   lsGGe qr aia + ++  ++ + deP + ld k+    a++i e+l + + + +  ++vv hdl + + l
  MMETSP1061-20121228|6115_1 221 EVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQrltaAHMIREILVNTKDADRRYVIVVEHDLAVLDYL 306
                 5568999999999**********************************8762222555666666667777788999****9887655 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 8e-05
   TIGR02211  26 leiekgelvaivGssGsGkstllhllggldkpts 59 
                  e +++e++ ++G+ G+Gk+t++ +l+gl+k+ +
  MMETSP1061-20121228|6115_1 396 GEFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDE 429
                 467889***********************98765 PP

  == domain 4    score: 33.1 bits;  conditional E-value: 1.7e-10
   TIGR02211 125 llekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdg 217
                 +++ + +e  i++   +lsGGe qr ai+ al +  ++ l deP + ld+++  +  ++++++  +++ +  vv hd  +a  l  ++ +++g
  MMETSP1061-20121228|6115_1 488 VMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYHG 580
                 6677788888999999*****************999*************************98877776677899***999988877776665 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0    0.0075      0.38      30      60 ..     116     146 ..     112     149 .. 0.90
   2 !   23.2   0.0   1.5e-07   7.5e-06     119     240 ..     220     346 ..     201     380 .. 0.74
   3 !   59.7   0.0   1.2e-18     6e-17      28     218 ..     399     589 ..     377     602 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0075
   TIGR03265  30 gelvclLGPsGCGkttLLriiaGLekqdaGa 60 
                 g ++ l+G  G Gk+t L+i+aG  k++ G+
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 78899******************99998875 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1.5e-07
   TIGR03265 119 LelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklg....vttimvthdqeealslaDrivvmn..kgkieqvgtPeeiYeqPatkfvadfvGevnl 240
                 +e+ +l++ +++    lsGG  qr a+a   + + ++ ++DeP s LD k r    + ++++  + +       i+v hd      l+D + v+   +g    v+ P  + +q  ++f+a f+ + nl
  MMETSP1061-20121228|6115_1 220 IEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREILVNTKdadrRYVIVVEHDLAVLDYLSDFVCVLYgtAGAYGVVTMPFSV-RQGINAFLAGFIPTENL 346
                 6677778888888889*************9999*******************8877777776544331111346788888887778888888875113444555556665.66778888888877774 PP

  == domain 3    score: 59.7 bits;  conditional E-value: 1.2e-18
   TIGR03265  28 kkgelvclLGPsGCGkttLLriiaGLekqda.GaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnk.gkieqvgt 218
                 +++e++ lLG  G Gktt++r++aGL+k+d+  ++ ++g d  +  +   d  + ++   + P +  +      L+++ ++   + + v+ +++ + +++  +     lsGG  qr+a++ al    ++ L+DeP + LD+  r +  + +k++  + + t+ +v hd   a  laDr+vv      ie ++t
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQKSDEqEKLQKDGYDYEASQAGVPDLNVSYKPQKISPKFKGT--TRQLLHKRIRDAYVHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYHGrPGIEATAT 589
                 6789***********************987615788899************************98543..445577777777778899********************************************************************************************9863145666555 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0    0.0001    0.0053     491     523 ..     114     146 ..     109     159 .. 0.95
   2 !   21.4   0.0   2.7e-07   1.4e-05     602     673 ..     234     312 ..     165     321 .. 0.84
   3 !   53.3   0.0   6.3e-17   3.2e-15     494     674 ..     402     578 ..     372     581 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.0001
   TIGR03375 491 kpGekvaiiGriGsGKstllklllglyepteGs 523
                 +pG+ ++++G++G GKst lk+l+g  +p+ G+
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 79**************************99886 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 2.7e-07
   TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella......dkTlvlvtHrtslLe.lvdriiv 673
                 + LSgG  q  a+a   ++  +++++DEP+s lD ++  +  + ++e+l        + +++v H  ++L+ l d + v
  MMETSP1061-20121228|6115_1 234 RVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREILVntkdadRRYVIVVEHDLAVLDyLSDFVCV 312
                 67********************************999877777777765422123357899999***999834444444 PP

  == domain 3    score: 53.3 bits;  conditional E-value: 6.3e-17
   TIGR03375 494 ekvaiiGriGsGKstllklllglyepte.Gsvlldgvdirqidpadlrrnigyvpqdvt.LfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLe.lvdriivl 674
                 e + ++G++G+GK+t  ++l+gl + +e  +++ dg d++  +      n++y pq+++  f Gt r+ +   ++ ++d+ +        v++++  +p  ++  i ++ ++LSgG  q +a++ al k  +++l+DEP++ lD+++  ++ + +k+++   +kT  +v H   + + l+dr++v 
  MMETSP1061-20121228|6115_1 402 EIIVLLGENGTGKTTFVRMLAGLQKSDEqEKLQKDGYDYEASQAGVPDLNVSYKPQKISpKFKGTTRQLL---HKRIRDAYVHP----QFVSDVM--KPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMhsKKTAFVVEHDFIMATyLADRVVVY 578
                 6799*******************9986526899*******999999999********8647******855...45577776544....4466665..58899*******************************************************987679********998864499***995 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   6.1e-13   3.1e-11      27     217 ..     116     314 ..     110     323 .. 0.76
   2 !   12.2   0.0   0.00037     0.019      23      58 ..     397     432 ..     382     441 .. 0.83
   3 !   34.2   0.0   7.1e-11   3.6e-09     138     218 ..     498     580 ..     451     596 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 6.1e-13
   TIGR00972  27 nkvtaliGpsGcGkstllrslnrlndlv.eev....r.ieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeld..eiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpi....atekieeliqeLkkk..ytivivthnmqqaarvsdktaffl 217
                  +v +l+G  G Gkst l+ l   ++ +   +       e  v+++g+++ +  ++++e r+k  m  q ++  p  +   v   l+ ++  d++el+  ++  ++++      e+k   +++   LsGG  qr++ia +     +v ++DeP+s LD +    a++ i e++ + k+     +++v h+++    +sd + +++
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNlGRYdnppDwEEILVHFRGSELQNYFTQILEDRMKATMKMQYVDAIPRVLRGTVKDILKDRD--DRSELEgrDVYGWAIEV----AELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKqrltAAHMIREILVNTKDAdrRYVIVVEHDLAVLDYLSDFVCVLY 314
                 58999**************9974433220222111121345699*******************************998888887777665..55555410444444444....4667777788889************9988899*************86222267788898888876544679999****99999999887765 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00037
   TIGR00972  23 eikknkvtaliGpsGcGkstllrslnrlndlveevr 58 
                 e+++ ++++l+G  G+Gk+t++r l  l++  e+ +
  MMETSP1061-20121228|6115_1 397 EFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQEK 432
                 678899*******************99887665544 PP

  == domain 3    score: 34.2 bits;  conditional E-value: 7.1e-11
   TIGR00972 138 lkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqe..Lkkkytivivthnmqqaarvsdktaffle 218
                 +++  ++LsGG  qrl+i  al    +v L+DeP++ LD+++  +  ++i+   +++k t  +v h++  a+ ++d++++++ 
  MMETSP1061-20121228|6115_1 498 IDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRfiMHSKKTAFVVEHDFIMATYLADRVVVYHG 580
                 4566789***********************************99999999983357889******************987654 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0062      0.32       5      35 ..     115     145 ..     112     154 .. 0.85
   2 !   30.3   0.0   1.3e-09   6.8e-08      95     191 ..     217     318 ..     184     327 .. 0.80
   3 !   46.6   0.0   1.4e-14   7.1e-13       5     192 ..     400     586 ..     396     608 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0062
   TIGR03771   5 kGellgllGpnGaGkttllrailglikvakG 35 
                 +G++lgl+G nG Gk+t l+ + g  k++ G
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLG 145
                 799****************988877666555 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1.3e-09
   TIGR03771  95 adalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsq....ellvelfeela.gegtailmtthdlaeavatcdrvvllngrvv 191
                   a+e ++l++l++r +  lsGG+ qr  +a        + ++dep + ld+  +     ++ e++ +   ++ + ++++ hdla     +d v++l g+  
  MMETSP1061-20121228|6115_1 217 GWAIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRltaaHMIREILVNTKdADRRYVIVVEHDLAVLDYLSDFVCVLYGTAG 318
                 568999*************************98888899************87541111556676665541556779999*****99899999999988765 PP

  == domain 3    score: 46.6 bits;  conditional E-value: 1.4e-14
   TIGR03771   5 kGellgllGpnGaGkttllrailglikva.kGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllr.rpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeel.agegtailmtthdlaeavatcdrvvllngr..vva 192
                   e++ llG nG+Gktt++r + gl k+  + +++ +g       ++ G vp    +   +  +     ++G ++++   r r      + v+d ++  +++ + d  v  lsGG+ qr+ ++ al     + l+dep + ld   + + +++++ +    +++ +++ hd+  a   +drvv+  gr  + a
  MMETSP1061-20121228|6115_1 400 DSEIIVLLGENGTGKTTFVRMLAGLQKSDeQEKLQKDGY--DYEASQAG-VPD---LNVSYKPQKISPKFKGTTRQLLHKRiRDAYVHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFiMHSKKTAFVVEHDFIMATYLADRVVVYHGRpgIEA 586
                 5799********************998541455666664..33333333.564...344454444456678999887655534445555789*****************************************************99999999987615667889999****************998733334 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0055      0.28       1      26 [.     121     146 ..     121     149 .. 0.93
   2 !   26.6   0.0   1.2e-08   6.1e-07      84     147 ..     219     282 ..     200     350 .. 0.77
   3 !   51.8   0.0   2.7e-16   1.3e-14       1     174 [.     406     578 ..     406     593 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0055
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGk 26 
                 l+G+ G Gk+t L++laG  +++ G+
  MMETSP1061-20121228|6115_1 121 LVGTNGIGKSTALKILAGKSKPNLGR 146
                 689******************99986 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.2e-08
   TIGR01187  84 aLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalq 147
                 a+e+ +l+++ +r++  lsGG  qr a+a + ++  ++ ++Dep s LD k r    + ++++ 
  MMETSP1061-20121228|6115_1 219 AIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIL 282
                 788999********************************************99976655555543 PP

  == domain 3    score: 51.8 bits;  conditional E-value: 2.7e-16
   TIGR01187   1 lLGpsGsGkttlLrllaGleelds.GkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpka.eikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavl 174
                 lLG  G+Gktt +r+laGl++ d+  k+  dg d     a    +nv ++   + P    +      L  +++  a    + v ++++   +e + +  ++ lsGG  qr+a+  a+ k  ++ L+Dep + LD + r +  + +k++  +   t  +v hD   a  ++dr++v 
  MMETSP1061-20121228|6115_1 406 LLGENGTGKTTFVRMLAGLQKSDEqEKLQKDGYDYEASQAGVPDLNVSYKPQKISPKFKGTT---RQLLHKRIRDAyVHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVY 578
                 89*******************987257999**************************975544...444444444450555679****************************************************************999999********************986 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   1.1   1.5e-13   7.5e-12      11     199 ..     115     313 ..     112     318 .. 0.68
   2 !   40.2   0.1   9.9e-13     5e-11      12     200 ..     401     579 ..     397     596 .. 0.72

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.5e-13
   TIGR02770  11 rgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal.alrgreialilqnPrsa...fnPlltikeqlletlkaleklskqakeliveale..avgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleel....rekrglgillithDlgvvaeladevavm 199
                  g+vl+lvG  G Gks++ + + g  +++l + +     ++  +    +  ++ ++ il + ++a   ++ + +i + l+ t+k   k  ++  el  + +   a++++e +++ +     lsGG lqR  ia + +  + + + DeP++ lDv+++++  ++++e+    ++ +   ++++ hDl+v+ +l d v+v+
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLGRYDNPPDWEEILVHFRgSELQNYFTQILEDRMKAtmkMQYVDAIPRVLRGTVKDILKDRDDRSELEGRDVYgwAIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIlvntKDADRRYVIVVEHDLAVLDYLSDFVCVL 313
                 6899999999999999988888888888877766543333332222234445555666666666522233445555666666666655554444444333331133344445677777889*********************************9998877777776221144555679******************98 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 9.9e-13
   TIGR02770  12 gkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqlletlkalekls.kqak...elivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavme 200
                  +++ l+Ge G+Gk++    + gl++++    + +++ dg ++ a++    ++  +  +P++       i+ +++ t ++l +   ++a    + + + ++       e ++++    lsGG lqR+ i lal   a + + DeP++ lD  ++++  k ++++  ++  + +++ hD+ + ++lad v+v +
  MMETSP1061-20121228|6115_1 401 SEIIVLLGENGTGKTTFVRMLAGLQKSD---EQEKLQKDGYDYEASQAGVPDLN-VSYKPQK-------ISPKFKGTTRQLLHKRiRDAYvhpQFVSDVMKPLT---IESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYH 579
                 5788888888888888888888887744...45577888888877755444443.2233433.......33333333333222221222200013444444444...4589999999**********************************************9999999999****************9865 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0039       0.2      24      53 ..     116     145 ..     100     148 .. 0.89
   2 !   28.3   0.0   5.1e-09   2.6e-07     120     192 ..     227     303 ..     213     318 .. 0.73
   3 !   46.3   0.0   1.5e-14   7.8e-13      22     202 ..     399     578 ..     382     585 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0039
   TIGR01277  24 GervailGesGaGkstllnliaGflepasG 53 
                 G+ + ++G  G Gkst l+++aG  +p  G
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNLG 145
                 78889******************9999877 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 5.1e-09
   TIGR01277 120 dylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkk...la.dekkltlllvthslsda 192
                 ++ +r    lsGG+ qr a+a c ++   ++++dep s ld k r     ++++    + d  ++ +++v h+l  +
  MMETSP1061-20121228|6115_1 227 HLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREilvNTkDADRRYVIVVEHDLAVL 303
                 555677778********************************999976555554310023033445677788877654 PP

  == domain 3    score: 46.3 bits;  conditional E-value: 1.5e-14
   TIGR01277  22 eaGervailGesGaGkstllnliaGflep.asGeikvndkdhtrsapyerpvsmlfqennlfahl..tvrqniglGlkpglklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvv 202
                  + e++ +lGe G+Gk+t++ ++aG+ +   + +++ ++ d+ +s      + + ++ + + +++  t rq     l+  ++ + v+ + v dv + + i+ +++   + lsGG+ qr+a++  l ++  ++l+dep + ld   r +   ++k+   + k+t  +v h+   a+  a++vvv 
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQKSdEQEKLQKDGYDYEASQAGVPDLNVSYKPQKISPKFkgTTRQ----LLHKRIRDAYVHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVY 578
                 456899********************876257789999999999988888888999999998877223444....467888888999********************************************************************************************99874 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00049     0.025      33      64 ..     115     146 ..     100     149 .. 0.93
   2 !   22.0   0.0     3e-07   1.5e-05     124     211 ..     221     311 ..     204     351 .. 0.79
   3 !   50.6   0.0     6e-16     3e-14      32     214 ..     399     579 ..     383     601 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00049
   TIGR03258  33 aGellallGksGsGkttllravaGfvkadGGr 64 
                 +G++l l+G  G Gk+t l+++aG  k++ Gr
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 8************************9998876 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 3e-07
   TIGR03258 124 klvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlr...asvveelkalhrelpeltvlyvthdrdealvladkil 211
                  + +l    +r    lsGG  qr a+a   +   dv ++dep s ld + r   a +  e+    ++     v++v hd      l+d + 
  MMETSP1061-20121228|6115_1 221 EVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRltaAHMIREILVNTKDADRRYVIVVEHDLAVLDYLSDFVC 311
                 556666677777889************9999999**************9884445678888888888889999999999776666666555 PP

  == domain 3    score: 50.6 bits;  conditional E-value: 6e-16
   TIGR03258  32 eaGellallGksGsGkttllravaGfvkadG.GrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrarkqskalia.ervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmk 214
                    e++ llG+ G+Gktt +r++aG+ k+d   +l   + d         +l + ++   + p++k        l  ++  +a +  + v+d +k + +     +  + lsGG  qr+a++ al    dv l+dep + ld++ r +  + +k++  +  + t  +v hd   a  lad++ + +
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQKSDEqEKLQKDGYDYEASQAGVPDLNVSYKPQKISPKFKGTTR---QLLHKRIRDAYVHpQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMH-SKKTAFVVEHDFIMATYLADRVVVYH 579
                 56799************************99789999999*9999999999************9887655...566777778887626799*********9999999**********************************************98765.5678999**************98864 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.2e-12   5.9e-11      37     224 ..     116     313 ..     112     318 .. 0.77
   2 !   14.6   0.0   7.6e-05    0.0038      32      64 ..     396     428 ..     366     442 .. 0.70
   3 !   29.2   0.0   2.6e-09   1.3e-07     143     236 ..     497     590 ..     483     606 .. 0.89

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 1.2e-12
   TIGR02769  37 GetvallGrsGaGkstlarlllGlekPakGe...........vsfrGqdlakl.drkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkkl....kqefGlaylfithdlrlvqkfaqrvlvl 224
                 G+ ++l+G+ G Gkst  ++l G  kP+ G+           v+frG +l++   +    +++ ++++ + d+i  v  r +v+ i+++      + +e e ++     +e+ el++   ++  r lsGG lqr +ia        + ++de  s ld+  ++++ ++++++    k++    ++++ hdl + +++++ v vl
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNLGRydnppdweeilVHFRGSELQNYfTQILEDRMKATMKMQYVDAIPRV-LRGTVKDILKD----RDDRSELEGRDVYGWAIEVAELKH-LQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIlvntKDADRRYVIVVEHDLAVLDYLSDFVCVL 313
                 899*************************9965556666666689******98615556789999*********9987.47777777655....555555555555666666677754.44667789***********977667788999**********99888777766652221555555567889***********99998 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 7.6e-05
   TIGR02769  32 lsleeGetvallGrsGaGkstlarlllGlekPa 64 
                  +  + e + llG+ G+Gk+t+ r+l Gl+k  
  MMETSP1061-20121228|6115_1 396 GEFTDSEIIVLLGENGTGKTTFVRMLAGLQKSD 428
                 46778899*********************9975 PP

  == domain 3    score: 29.2 bits;  conditional E-value: 2.6e-09
   TIGR02769 143 vldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikva 236
                 ++d   + lsGG lqr++i+ al     + ++de  + ld   +++  + +k++  ++  +  ++ hd+ ++ ++a+rv+v ++   +e + +a
  MMETSP1061-20121228|6115_1 497 IIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYHGRPGIEATATA 590
                 56777789****************999999***********************99999999999*****************9988777777655 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00097     0.049      11      58 ..     100     146 ..      94     152 .. 0.80
   2 !   27.8   0.0   7.6e-09   3.8e-07     121     204 ..     219     307 ..     200     315 .. 0.78
   3 !   10.6   0.0    0.0014     0.071      25      56 ..     398     429 ..     381     451 .. 0.82
   4 !   31.9   0.0   4.4e-10   2.2e-08     115     208 ..     482     576 ..     469     581 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00097
   TIGR02673  11 yaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGe 58 
                 y  +   L+++  + ++g++l l+G+ G Gk+t lk+l g+ kp+ G+
  MMETSP1061-20121228|6115_1 100 YGPNSFKLHRLP-SPRPGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 555555555554.45799*************************99885 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 7.6e-09
   TIGR02673 121 vlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdel....serildllkelnkr.Gttvivathdeelvervk 204
                 ++e+ +l++ ++   + lsgGe qR aia   +++ ++ + DeP   lD ++    ++ i ++l +++++    viv+ hd ++++  +
  MMETSP1061-20121228|6115_1 219 AIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQrltaAHMIREILVNTKDAdRRYVIVVEHDLAVLDYLS 307
                 567789999999*************************************8761111344555665555441457999999999988665 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 0.0014
   TIGR02673  25 iekgeflfltGasGaGkttllklllgaekpsr 56 
                 ++ +e++ l G+ G+Gktt++++l g +k ++
  MMETSP1061-20121228|6115_1 398 FTDSEIIVLLGENGTGKTTFVRMLAGLQKSDE 429
                 56778999****************99887654 PP

  == domain 4    score: 31.9 bits;  conditional E-value: 4.4e-10
   TIGR02673 115 qkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnk.rGttvivathdeelvervkkrvl 208
                  + v++v++ + +e  +++  ++lsgGe qR ai  a+ +  ++ l DeP   lD+e+  +  +++k++   +  t +v+ hd  ++   + rv+
  MMETSP1061-20121228|6115_1 482 PQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMhSKKTAFVVEHDFIMATYLADRVV 576
                 567999999**********************************************************9865156799999***999988888876 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0    0.0004      0.02     359     392 ..     114     147 ..     109     152 .. 0.93
   2 !   29.7   0.0   1.1e-09   5.4e-08     470     530 .]     234     300 ..     227     300 .. 0.84
   3 !    8.0   0.0     0.004       0.2     363     390 ..     403     430 ..     381     460 .. 0.80
   4 !   31.1   0.0     4e-10     2e-08     461     528 ..     494     563 ..     477     565 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0004
   TIGR02868 359 epGervavvGasGaGKstLlallaglldplkGev 392
                 +pG+ + +vG  G+GKst l++lag  +p+ G++
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLGRY 147
                 589999**********************999976 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.1e-09
   TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDae...teeelledLl...aaeegrtvvlvthrl 530
                 + lSGGe qR a+A   +++ +v + DEP+  LD++   t++++++++l   +  ++r v++v h+l
  MMETSP1061-20121228|6115_1 234 RVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKqrlTAAHMIREILvntKDADRRYVIVVEHDL 300
                 579*******************************985556899999998753334455699999986 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.004
   TIGR02868 363 rvavvGasGaGKstLlallaglldplkG 390
                  + ++G  G+GK+t + +lagl ++++ 
  MMETSP1061-20121228|6115_1 403 IIVLLGENGTGKTTFVRMLAGLQKSDEQ 430
                 57899*****************987654 PP

  == domain 4    score: 31.1 bits;  conditional E-value: 4e-10
   TIGR02868 461 ldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvth 528
                 +++ + +g ++lSGGe qRla+  aL ++a+v l+DEP++ LD e++ +  + +     ++++t  +v h
  MMETSP1061-20121228|6115_1 494 IESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKrfIMHSKKTAFVVEH 563
                 567888999***********************************99876655554333445555555555 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     3e-06   0.00015     347     378 ..     115     146 ..     103     152 .. 0.83
   2 !   21.4   0.0   3.4e-07   1.7e-05     437     507 ..     229     307 ..     176     319 .. 0.59
   3 !   16.1   0.0   1.4e-05   0.00073      28      68 ..     398     438 ..     372     455 .. 0.70
   4 !   24.3   0.0   4.5e-08   2.3e-06     155     218 ..     498     565 ..     468     582 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3e-06
   TIGR03719 347 kggivGviGpnGaGkstlfklitgkekpdsGe 378
                 +g ++G++G+nG Gkst +k+++gk kp+ G+
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 57788999999999999999999999988875 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 3.4e-07
   TIGR03719 437 qqkkvgelsGGernrvhlakllkeggnvllldePtndldvet.lra...leeallefaGc....avvishdrwfldria 507
                 q++++  lsGGe +r  +a    + ++v ++deP+  ldv+  l a   + e l +   +    ++v+ hd   ld ++
  MMETSP1061-20121228|6115_1 229 QNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQrLTAahmIREILVNTKDAdrryVIVVEHDLAVLDYLS 307
                 5666666666666666666666666666666666666666531222111223332222211111455555555555444 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 1.4e-05
   TIGR03719  28 ffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegi 68 
                 f ++  i +lG nG+Gk+t+++++aG++k+ e e l+++g+
  MMETSP1061-20121228|6115_1 398 FTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQEKLQKDGY 438
                 44445566678888888888888888888777777766665 PP

  == domain 4    score: 24.3 bits;  conditional E-value: 4.5e-08
   TIGR03719 155 edakveklsGGekrrvalcrlllekPdlllldePtnhldaes....vaWlekflkeykGtvvavthdr 218
                  d+ v+ lsGGe +r+a++  l +  d+ l+deP  +ld+e      + +++f+ + k t  +v hd 
  MMETSP1061-20121228|6115_1 498 IDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQrincAKVIKRFIMHSKKTAFVVEHDF 565
                 47788888888888888876666666888888888888887522214556677777777888888874 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0    0.0014      0.07      25      53 ..     114     142 ..      95     179 .. 0.83
   2 !   21.1   0.0   7.2e-07   3.6e-05     120     179 ..     223     282 ..     208     290 .. 0.89
   3 !   46.1   0.0   1.7e-14   8.6e-13      25     206 ..     399     579 ..     382     596 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0014
   TIGR03864  25 akgefvaLLGpnGaGkstLfslltrLyea 53 
                 ++g++  L+G nG Gkst +++l++  + 
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKP 142
                 7899*******************986665 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 7.2e-07
   TIGR03864 120 lglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelv 179
                  +l++ ++ ++r L+GG+ +r  ia   + + ++ ++De++  LD++ r +  +++re+ 
  MMETSP1061-20121228|6115_1 223 AELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIL 282
                 5778888899****************************************9999999865 PP

  == domain 3    score: 46.1 bits;  conditional E-value: 1.7e-14
   TIGR03864  25 akgefvaLLGpnGaGkstLfslltrLyeak.egeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWath.lvdeveaedrlvvlh 206
                 + +e+++LLG nG Gk+t + +l++L +++ + +++  G+d+++ +++ +  l v ++ + +   +  +     h  ++        + ++++++ l ++   ++ v++L+GG+ +r+ i+ al    ++ L+De+++ LD e r +  + +++ + +++ +     h ++     +dr+vv h
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQKSDeQEKLQKDGYDYEA-SQAGVPDLNVSYKPQKISPKFKGTTRQLLHKRIRD--AYVHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHdFIMATYLADRVVVYH 579
                 567899********************988625689999***975.567789*********99999987777777776653..33445668999999****************************9999*************************9998877776666663455556667776665 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   0.00011    0.0057      25      56 ..     115     146 ..      97     161 .. 0.90
   2 !   18.8   0.0   3.8e-06   0.00019     121     205 ..     225     313 ..     192     324 .. 0.87
   3 !   42.9   0.0   1.6e-13   8.1e-12      23     205 ..     398     578 ..     381     592 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 0.00011
   TIGR03410  25 kgevvavlGrngvGkttllkalvgllkvksGe 56 
                  g+v+ ++G+ng+Gk+t lk l g  k + G+
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 68999********************9998886 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 3.8e-06
   TIGR03410 121 lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqP....siikeiekvikelakekdlaillveqvldfaleladrylvl 205
                 lk++++R+   LsGG  q +aia   +++  + + DeP+  +         + i +++ + ++ +   +++ve+ l     l+d ++vl
  MMETSP1061-20121228|6115_1 225 LKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVkqrlTAAHMIREILVNTKDADRRYVIVVEHDLAVLDYLSDFVCVL 313
                 88999*********************************987643111245677899999999999999*******99999999988887 PP

  == domain 3    score: 42.9 bits;  conditional E-value: 1.6e-13
   TIGR03410  23 vekgevvavlGrngvGkttllkalvgllkvks.GeielegeditklkpeervkaGiayvpqGreifpkl..tveenlelglealkkkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvl 205
                  +++e++++lG ng+Gktt+++ l gl+k  +  +++ +g d +++++    +  ++y pq   i pk+  t++  l+  ++ +   + +   ++++    ++++ +     LsGG  q lai+ aL +   + l+DeP+  +      + +kvik+   +++ +  +ve+ + +a+ ladr++v 
  MMETSP1061-20121228|6115_1 398 FTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEqEKLQKDGYDYEASQA-GVPDLNVSYKPQK--ISPKFkgTTRQLLHKRIRDAYV-HPQFVSDVMKPL-TIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVY 578
                 56789*********************9987541567777777766554.345789*****95..6666522566666555555554.444444444433.467788888899*****************99***************999*********************************9885 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.98        49      30      54 ..     115     139 ..      98     148 .. 0.87
   2 !   23.2   0.0   1.8e-07     9e-06     131     207 ..     225     305 ..     202     315 .. 0.78
   3 !   14.9   0.0   6.5e-05    0.0033      20      59 ..     390     429 ..     380     444 .. 0.83
   4 !   35.5   0.0   3.2e-11   1.6e-09     122     213 ..     485     577 ..     468     581 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.98
   TIGR02982  30 pgeiviltGpsGsGkttlltliggl 54 
                 pg+++ l G+ G Gk t l +++g 
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGK 139
                 7899999************999875 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1.8e-07
   TIGR02982 131 leerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqkl....areqgttillvthdnrildv 207
                 l++  ++  + lsgG  qr aia + ++  ++ + deP + ld k   +  ++++++           +++v hd  +ld 
  MMETSP1061-20121228|6115_1 225 LKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIlvntKDADRRYVIVVEHDLAVLDY 305
                 55555667789********************************998777666666641110334445688899**999985 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 6.5e-05
   TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltligglrsvqe 59 
                 +l+    e ++ ei++l G+ G+Gktt++ +++gl++  e
  MMETSP1061-20121228|6115_1 390 ILHVDGGEFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDE 429
                 555556678899***********************98766 PP

  == domain 4    score: 35.5 bits;  conditional E-value: 3.2e-11
   TIGR02982 122 aeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnril.dvadrivk 213
                 ++++++ + +e+ +d   + lsgG  qr+ai+ al +  ++ l deP a ld++   +  +++++   +   t ++v hd  +   +adr+v 
  MMETSP1061-20121228|6115_1 485 VSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMAtYLADRVVV 577
                 568889999999********************************************************************8664259999985 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00091     0.046      28      59 ..     115     146 ..     109     151 .. 0.92
   2 !   24.6   0.0   7.6e-08   3.9e-06     122     203 ..     219     305 ..     208     315 .. 0.76
   3 !   10.0   0.0    0.0022      0.11      27      57 ..     399     429 ..     374     449 .. 0.82
   4 !   28.0   0.0   6.8e-09   3.4e-07     136     209 ..     502     576 ..     480     581 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00091
   TIGR00960  28 kGelvflvGhsGaGkstllklilgiekpsaGk 59 
                  G++  lvG  G Gkst lk++ g +kp+ G+
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 588889**********************9985 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 7.6e-08
   TIGR00960 122 alekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleev.....nraGttvlvathdenlves 203
                 a+e   lk+ +++    lsgGe qr aia   ++   + + deP++ ld ++ +   ++++e+     +     v+v  hd  +++ 
  MMETSP1061-20121228|6115_1 219 AIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIlvntkDADRRYVIVVEHDLAVLDY 305
                 7788889999999999*********************************98766555555544111112233468888888877765 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.0022
   TIGR00960  27 ekGelvflvGhsGaGkstllklilgiekpsa 57 
                 +  e++ l G+ G+Gk+t+++++ g +k+ +
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQKSDE 429
                 4567899******************998754 PP

  == domain 4    score: 28.0 bits;  conditional E-value: 6.8e-09
   TIGR00960 136 PvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevn.raGttvlvathdenlveskrkrvl 209
                  + lsgGe qr+ai+ a+ +   + l deP++ ld+e+  +  ++++++  +   t  v  hd  +      rv+
  MMETSP1061-20121228|6115_1 502 VQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFImHSKKTAFVVEHDFIMATYLADRVV 576
                 5689****************99*************************9861456789999999876666666665 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0019     0.095      49      79 ..     114     144 ..     111     150 .. 0.92
   2 !   18.3   0.0     3e-06   0.00015     162     201 ..     231     270 ..     221     299 .. 0.75
   3 !   40.2   0.1   7.2e-13   3.6e-11      10     214 ..     357     552 ..     346     568 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0019
   TIGR00955  49 ksGellAvlGsSGaGKtTLlnalafrsekgl 79 
                 ++G++l ++G+ G GK+T l++la +s+ +l
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNL 144
                 69************************99987 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 3e-06
   TIGR00955 162 grvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfs 201
                  ++++lSgGe +R a+a  +++   + ++DEP s LD   
  MMETSP1061-20121228|6115_1 231 REIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQ 270
                 4689*********************************743 PP

  == domain 3    score: 40.2 bits;  conditional E-value: 7.2e-13
   TIGR00955  10 vvtrvaqdgekkllvkrleealarkk...pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkk.ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq 214
                 v +r+++d + +l+++     ++r++   +ek +l+   G++   e++ +lG  G GKtT + +la  ++++ +   +   +G   ea++     a v + ++  +   ++ ++  + +  l++r+       + v++v++ l +++  d        v++lSgGe +Rla+   l +   + ++DEP + LDs    +  kv+k++ +
  MMETSP1061-20121228|6115_1 357 VSERAEADRKEDLMKSYSYPSMTRTQtrgKEKFILHVDGGEFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQE--KLQKDGYDYEASQ-----AGVPDLNVSYKPQKISPKFKGTTRQLLHKRIRDAyVHPQFVSDVMKPLTIESIIDNG------VQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIM 552
                 4555555555555555555555555456889***************************************99998..7788999888554.....5566666666666777777777777788888888899***********998865544......559*************9888889*************988888888877544 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0012      0.06      30      60 ..     116     146 ..     110     151 .. 0.93
   2 !   18.8   0.0   2.7e-06   0.00014     120     209 ..     220     314 ..     209     323 .. 0.81
   3 !   39.4   0.0   1.4e-12   7.2e-11      28     216 ..     399     585 ..     384     598 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0012
   TIGR01288  30 gecfgllgpngagkstiarlvlglispdegk 60 
                 g+++gl+g ng gkst  +++ g   p+ g+
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 8899***********************9986 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.7e-06
   TIGR01288 120 lefarleskadvrvadlsggmkrrltlaralindpqllildepttgldphar....hliwerlrsl.largktilltthlmeeaerlcdrlcvle 209
                 +e a l+   + ++  lsgg  +r+++a++ i+  ++ ++dep++ ld + r    h+i e l     a  + +++  h +   + l d +cvl 
  MMETSP1061-20121228|6115_1 220 IEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRltaaHMIREILVNTkDADRRYVIVVEHDLAVLDYLSDFVCVLY 314
                 688899999999999*********************************987622226666655433135556789999999999********985 PP

  == domain 3    score: 39.4 bits;  conditional E-value: 1.4e-12
   TIGR01288  28 aagecfgllgpngagkstiarlvlglispdegkitvlg..epvpararlarakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrs.llargktilltthlmeeaerlcdrlcvleagrkiae 216
                 +  e + llg ng+gk+t  r++ gl   de +    +  + + ++a +   ++   pq  + + + t+r+ l    r   ++ + + +v+ +l     +es  d  v  lsgg  +rl+++ al +  ++ ++dep++ ld   r    + ++  ++   kt ++  h +  a  l dr++v  +gr  +e
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQEKLQKDgyDYEASQAGVPDLNVSYKPQKISPKFKGTTRQLLHKRIRDAYVHPQFVSDVMKPL----TIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRfIMHSKKTAFVVEHDFIMATYLADRVVVY-HGRPGIE 585
                 6789999*******************98887665555512345666666666666666655444444666655555556666777777666666....79**********************************************9988887651566778999****999********8764.6665444 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.6e-08   1.8e-06      24     221 ..     114     314 ..      95     318 .. 0.75
   2 !    7.8   0.0    0.0072      0.36      23      56 ..     398     431 ..     379     448 .. 0.77
   3 !   33.8   0.0   8.5e-11   4.3e-09     145     221 ..     503     579 ..     489     598 .. 0.91

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 3.6e-08
   TIGR03005  24 aaGekvaliGpsGsGkstilrilmtletideGsikve...geqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfph..ktvldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetd....ltmllvthemgfarefadrvlffd 221
                  +G+ + l+G  G Gkst l+il    + + G+        e+l h +   G+ ++     + + r k  m +q  +  p   +  ++++ +       ++  +    a+e+ ++  l +        lsGG+ qr aia +      v +fde++s ld +       ++r++  +t+      +++v h++     ++d v+ ++
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLGRYDNPpdwEEILVHFR---GSELQNYFTQILEDRMKATMKMQYVDAIPRvlRGTVKDILKDRDDRSELEGRDVYGWAIEVAELKHLQN---REIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREILVNTKdadrRYVIVVEHDLAVLDYLSDFVCVLY 314
                 5789999*****************999999999887511246777777...66678888899999***************7223444555544444445555555555666666555555...55567************98888899************98877777777776544431111457889999999999999999865 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0072
   TIGR03005  23 vaaGekvaliGpsGsGkstilrilmtletideGs 56 
                  +  e + l+G  G+Gk+t +r+l  l++ de +
  MMETSP1061-20121228|6115_1 398 FTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQE 431
                 456678999******************9988753 PP

  == domain 3    score: 33.8 bits;  conditional E-value: 8.5e-11
   TIGR03005 145 aqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffd 221
                   lsGG+ qr+ai+ al     v l de+++ ld e   +  +v++r+    + t ++v h++ +a  +adrv+ ++
  MMETSP1061-20121228|6115_1 503 QALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYH 579
                 469**********************************************************************9764 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0024      0.12     343     373 ..     115     145 ..     109     148 .. 0.91
   2 !   15.7   0.0   1.8e-05   0.00091     454     535 ..     235     321 ..     230     325 .. 0.80
   3 !   42.4   0.0   1.5e-13   7.4e-12     342     525 ..     399     577 ..     378     583 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0024
   TIGR01842 343 aGealaiiGpsgsGkssLarllvGvwlpasG 373
                 +G++l+++G+ g Gks+  ++l G  +p+ G
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLG 145
                 8***********************9998877 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.8e-05
   TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqa....lakalkelk.arkitvvvithrpsllelvdkilvlkdGalkafG 535
                  LsgG  qR a+a     +  + + DeP + LD +        +++ l++ k a ++ v+v+ h  ++l+     + +  G+  a+G
  MMETSP1061-20121228|6115_1 235 VLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTaahmIREILVNTKdADRRYVIVVEHDLAVLDYLSDFVCVLYGTAGAYG 321
                 59*******************************98765501114445555563567899**********999888877788888887 PP

  == domain 3    score: 42.4 bits;  conditional E-value: 1.5e-13
   TIGR01842 342 kaGealaiiGpsgsGkssLarllvGvwlp.asGsvrlDgadlkqwdretlGksiGYlPqdve.LfeGtvaenia.RfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalke.lkarkitvvvithr.psllelvdkilv 525
                 +  e+++++G  g+Gk++ +r+l G ++  ++ +++ Dg+d +  +      ++ Y Pq++   f+Gt  + +  R+++     + +    +++v   +   p   ++ i +g +aLsgG  qR+a+  al     + ++DeP a LD+e  +  ak +k+ + + k t+ v+ h  + ++ l+d+++v
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQKSdEQEKLQKDGYDYEASQAGVPDLNVSYKPQKISpKFKGTTRQLLHkRIRD-----AYVHPQFVSDV---MK--PLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRfIMHSKKTAFVVEHDfIMATYLADRVVV 577
                 567899*******************997626889*******99999999999*********857****99987524554.....33444444444...33..667899**********************9555567789*******************984456677888888862455667788776 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00064     0.032     310     341 ..     116     147 ..     113     153 .. 0.91
   2 !   34.0   0.0   5.1e-11   2.6e-09     141     339 ..     211     430 ..     191     441 .. 0.72
   3 !   20.8   0.0   5.1e-07   2.6e-05     418     500 ..     495     577 ..     488     598 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00064
   TIGR03269 310 keifGlvGtsGaGkttlskilaGvleptsGev 341
                 +++ GlvGt G Gk+t  kilaG  +p  G++
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNLGRY 147
                 5799********************99999876 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 5.1e-11
   TIGR03269 141 eakeavkravelleevklehrithiardlsGGekqrvvlarqlakeplllladeptGtldpk....taklvhealkeavkeedislvltshwpeviedlsdkaill.....ekGeiveeGepeevvakflesvsevek......ek..evevgediikvkdvskryi..svdrGvvkavdnvslev.....kekeifGlvGtsGaGkttlskilaGvleptsG 339
                 e+++    a+e+ e  +l+ r     r lsGGe qr  +a   ++   +++ dep+  ld k    +a+++ e+l ++  ++   +++  h   v++ lsd   +l       G + +  +  + ++ fl  +   e+      +   +v  + +  + +d+ k y   s+ r   +  ++  l+v     +++ei  l+G  G+Gktt  ++laG+ +  + 
  MMETSP1061-20121228|6115_1 211 EGRDVYGWAIEVAELKHLQNR---EIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKqrltAAHMIREILVNTKDADRRYVIVVEHDLAVLDYLSDFVCVLygtagAYGVVTMPFSVRQGINAFLAGFIPTENlrfrneSLsfKVSERAEADRKEDLMKSYSypSMTRTQTRGKEKFILHVdggefTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQ 430
                 555556666666665555555...5688********************************8644435889999999998888999999*************9877733222235566666677779999987654432211111221134455677899999997643499988888777777766222225789*********************9876655 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 5.1e-07
   TIGR03269 418 keildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraal 500
                 ++i+d+  + ls Ge  r+a++  l k   + ++dep+  +d   + + a+ i +     ++t  +v hd  + + + dr+ +
  MMETSP1061-20121228|6115_1 495 ESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVV 577
                 78999999****************************************************************9999***9976 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   8.1e-11   4.1e-09      33     196 ..     115     282 ..     112     312 .. 0.70
   2 !    8.2   0.0    0.0065      0.33      32      58 ..     399     425 ..     366     442 .. 0.77
   3 !   22.8   0.0   2.2e-07   1.1e-05     146     196 ..     501     551 ..     469     578 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 8.1e-11
   TIGR02324  33 aGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkase.......revlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakel.larlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeak 196
                  G+++ l G+ G Gkst lk l ++ +p+ gr+      e + lv+           ++le R  + +   q++ +iPRv  +  v++ l  +   +e     +  + ++  ++ ++L +      sGGe qR  ia   i+   + + deP + Ld ++r +   +i+e+ 
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLGRYDNPPDWEEI-LVHFRGselqnyfTQILEDR-MKATMKMQYVDAIPRVL-RGTVKDILKDRDDRSELEGRDVYGWaIEVAEL-KHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIL 282
                 79*****************************99876544444.33332200111115677777.6678889********95.45566666665444443333333330333333.56777777899********************************99988777777654 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0065
   TIGR02324  32 eaGelvalsGksGaGkstllkslyanY 58 
                 ++ e+++l G+ G+Gk t++++l +  
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQ 425
                 456789***************997655 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 2.2e-07
   TIGR02324 146 aPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeak 196
                   +  sGGe qR+ i+ al ++  + L+deP a Ld+ +r    ++ik+  
  MMETSP1061-20121228|6115_1 501 GVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFI 551
                 55789**********************************988888888743 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   2.5e-05    0.0013      27      55 ..     117     145 ..     112     154 .. 0.89
   2 !   16.1   0.0     3e-05    0.0015     109     199 ..     220     315 ..     197     322 .. 0.85
   3 !   32.5   0.0   2.9e-10   1.5e-08      25     194 ..     400     575 ..     385     596 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.5e-05
   TIGR03740  27 svygllGpnGaGkstllklltGllrktsG 55 
                 +v gl+G nG Gkst lk+l+G  +++ G
  MMETSP1061-20121228|6115_1 117 QVLGLVGTNGIGKSTALKILAGKSKPNLG 145
                 799*******************8888766 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 3e-05
   TIGR03740 109 lkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldP....lGiqelreliksfpe.kGitvilsshilsevelladhiGiise 199
                 +++ +l++ + ++ + +s G  qr+ ia + +++ ++ ++deP+  ld        + +re++   ++ +   vi+  h l+ ++ l+d++ +++ 
  MMETSP1061-20121228|6115_1 220 IEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVkqrlTAAHMIREILVNTKDaDRRYVIVVEHDLAVLDYLSDFVCVLYG 315
                 578899******************************************7333235667888776665515678999**************998865 PP

  == domain 3    score: 32.5 bits;  conditional E-value: 2.9e-10
   TIGR03740  25 knsvygllGpnGaGkstllklltGllrkts.Geilldgrewtrk..dlkkiGsliesPalyenl..tarenlkvrtlllglpesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpek.Gitvilsshilsevelladhi 194
                 ++++  llG nG+Gk+t +++l+Gl + ++  ++  dg ++  +   + ++ +  +   +  ++  t+r+ l+ r     ++ + +++v+k + +e++  + ++ +s G  qrl i++al +  ++ ++deP+  ld     +  ++ik f  +   t  +  h +     lad +
  MMETSP1061-20121228|6115_1 400 DSEIIVLLGENGTGKTTFVRMLAGLQKSDEqEKLQKDGYDYEASqaGVPDLNVSYKPQKISPKFkgTTRQLLHKRIRDAYVHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHsKKTAFVVEHDFIMATYLADRV 575
                 678999*******************9877515677888877544115566665555444444432267788888888999*********************************************************999888999999886441456666666666666777766 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.2   2.7e-07   1.4e-05      19     203 ..     116     313 ..     112     363 .. 0.74
   2 !   44.3   0.3   5.5e-14   2.8e-12      16     204 ..     398     579 ..     383     605 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.7e-07
   TIGR01186  19 GeiiviiGlsGsGkstlvrllnrliePtaGk...........ilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldP...lirdel.qdelvklqkklqktivfithdldealrlgdrivil 203
                 G+++ ++G  G Gkst +++l     P  G+           ++  G ++ +   + l    r k +m +q +  +P +      ++  +  + +e e ++    a+   +l++ ++r    lsGG  qr  +a    +  d+ + de+ s ld    l+  ++ ++ lv+ ++  ++ ++ + hdl     l+d + +l
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNLGRydnppdweeilVHFRGSELQNYFTQIL--EDRMKATMKMQYVDAIPRVLRGTVKDILKDRDDRSELEGRDVYGWAIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVkqrLTAAHMiREILVNTKDADRRYVIVVEHDLAVLDYLSDFVCVL 313
                 889999***************9999999997333333333222334555555544444..368999**********9864433334444445555556666666677888889999999999************999999**************7223555666155578999999999*******98777777777665 PP

  == domain 2    score: 44.3 bits;  conditional E-value: 5.5e-14
   TIGR01186  16 ieeGeiiviiGlsGsGkstlvrllnrliePt.aGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilk 204
                  ++ eiiv++G  G+Gk+t vr+l  l     + k+  dG d  e s+a +       +++  qki+     t  + ++  ++    d+    +   +++k + +e   d+  + lsGG  qr+ +  al    d+ l+de+ + ld   r +  + ++++  + +kt   + hd+  a  l+dr+v+ +
  MMETSP1061-20121228|6115_1 398 FTDSEIIVLLGENGTGKTTFVRMLAGLQKSDeQEKLQKDGYDY-EASQAGV---PDLNVSYKPQKISPKFKGTTRQLLHKRIR----DAYVHPQFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYH 579
                 5789***********************9875167888999885.4455544...66689999999986666666665444443....4445566789*****************************************************************************************9865 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.4e-05    0.0012     477     509 ..     114     146 ..      96     149 .. 0.92
   2 !   11.9   0.0   0.00024     0.012     588     624 ..     235     271 ..     230     301 .. 0.88
   3 !   35.7   0.0   1.5e-11   7.5e-10     479     644 ..     401     564 ..     386     582 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.4e-05
   TIGR03797 477 epGefvaivGaSGsGKStllrlLLgFekPesGs 509
                 +pG+ +++vG+ G GKSt l++L g  kP+ G 
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 69***************************9995 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00024
   TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQ 624
                  lSGG  QR  iA   ++   + +fDE  S LD +  
  MMETSP1061-20121228|6115_1 235 VLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQR 271
                 59*******************************7754 PP

  == domain 3    score: 35.7 bits;  conditional E-value: 1.5e-11
   TIGR03797 479 GefvaivGaSGsGKStllrlLLgFekP.esGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl....kvtRiviAHR 644
                  e + + G+ G+GK t++r+L g +k  e+ ++  DG+d e+        q Gv   n    + +i     g+++ l +++  +a  +  +  D+ + P+ +  +i++g ++lSGG  QRl i  al +   + l+DE    LD +      + ++++    k t  v+ H 
  MMETSP1061-20121228|6115_1 401 SEIIVLLGENGTGKTTFVRMLAGLQKSdEQEKLQKDGYDYEA-------SQAGVPDLNVSYKPQKISPKFKGTTRqLLHKRIRDAYVHPQFVSDVMK-PLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFimhsKKTAFVVEHD 564
                 345899******************99725678999**99876.......799***99***************999899*****************87.*****************************99999*******999**8865444444433211115566666665 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0     2e-05     0.001      26      57 ..     114     145 ..     107     148 .. 0.90
   2 !   17.4   0.0     1e-05   0.00051     118     180 ..     220     282 ..     171     312 .. 0.90
   3 !   28.6   0.1   3.9e-09     2e-07      26     205 ..     399     578 ..     379     612 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2e-05
   TIGR03522  26 ekGeivGflGPnGaGkstlmkiltgylkadsG 57 
                 ++G+++G++G nG Gkst +kil+g  k++ G
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLG 145
                 58*********************998777655 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1e-05
   TIGR03522 118 ielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeia 180
                 ie + lk+ q + i  ls G  qr  +a++ +   +v ++deP++ ld  q +   ++i+ei 
  MMETSP1061-20121228|6115_1 220 IEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIL 282
                 7888899999******************************************99999999885 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 3.9e-09
   TIGR03522  26 ekGeivGflGPnGaGkstlmkiltgylkads.Gsvavagedvlknslev.rkniGylPeh.nPlyldlyvreyl.efsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevike..iakdktvilsthimqevealcdrviii 205
                    ei+ +lG nG+Gk+t +++l+g  k+d    ++ +g+d   +   v   n+ y P+   P ++    r+ l + + + y        + v ++++   +++     ++als G  qr  ++ al    +v ++deP++ ld +q ++  +vik+  +  +kt ++  h       l drv++ 
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQKSDEqEKLQKDGYDYEASQAGVpDLNVSYKPQKiSPKFKGTT-RQLLhKRIRDAYVHP-----QFVSDVMKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRfiMHSKKTAFVVEHDFIMATYLADRVVVY 578
                 5679**********************9998615688899998888777734589999987356666654.555514555555444.....88999999999999999*************************************************843457899999999777778888998875 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.016      0.81     357     384 ..     114     141 ..      95     152 .. 0.84
   2 !   12.3   0.0   0.00018    0.0092     470     505 ..     235     270 ..     229     314 .. 0.76
   3 ?    5.5   0.0     0.021       1.1     358     388 ..     400     430 ..     374     445 .. 0.81
   4 !   33.7   0.0   6.2e-11   3.1e-09     440     541 ..     471     578 ..     450     595 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.016
   TIGR02203 357 eaGevvalvGrsGsGkstlvnllpRFye 384
                 ++G+v+ lvG  G Gkst +++l+   +
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSK 141
                 79*****************999976555 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00018
   TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDnes 505
                  LsGG  qR aia   ++ + + + De  s LD   
  MMETSP1061-20121228|6115_1 235 VLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQ 270
                 59*******************************764 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.021
   TIGR02203 358 aGevvalvGrsGsGkstlvnllpRFyepdsG 388
                   e++ l G  G Gk+t v++l+   + d+ 
  MMETSP1061-20121228|6115_1 400 DSEIIVLLGENGTGKTTFVRMLAGLQKSDEQ 430
                 457899****************988777664 PP

  == domain 4    score: 33.7 bits;  conditional E-value: 6.2e-11
   TIGR02203 440 veealaaaylk.dlvdklpeGldt.evGengs.kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerl.m.kgRttlviahRL.stiekaDrivvl 541
                 +++ +++ay++ ++v ++ + l   ++ +ng+  LsGG  qRlai  al k a + ++De  + LD+e   +  + ++r+ m  ++t++v+ h        aDr+vv 
  MMETSP1061-20121228|6115_1 471 LHKRIRDAYVHpQFVSDVMKPLTIeSIIDNGVqALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFiMhSKKTAFVVEHDFiMATYLADRVVVY 578
                 4556677776536777765555431356666626**********************************999999999995242579*******861456689**9986 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00015    0.0078     503     534 ..     114     145 ..     105     154 .. 0.91
   2 !   10.1   0.0   0.00069     0.035     614     659 ..     234     279 ..     222     302 .. 0.88
   3 !   34.5   0.0   2.9e-11   1.5e-09     506     660 ..     402     549 ..     377     581 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00015
   TIGR03796 503 kpGqrvAlvGgsGsGkstiaklvaGlyepwsG 534
                 +pGq + lvG+ G Gkst  k++aG  +p  G
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLG 145
                 69***********************9998877 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00069
   TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlr 659
                 + lsGG+ qR+ iA   ++   + ++DE  s LD +   +  + +r
  MMETSP1061-20121228|6115_1 234 RVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIR 279
                 569*******************************998777766666 PP

  == domain 3    score: 34.5 bits;  conditional E-value: 2.9e-11
   TIGR03796 506 qrvAlvGgsGsGkstiaklvaGlyepws.GeilfDgkpreeiprevlanslalvdqdiv.lfegtvrdnltlwdetipeedlvrAakDAaihdvila...rpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr 660
                 + + l G  G+Gk t  +++aGl ++ +  ++  Dg + e+ +  v    +++  q+i+  f+gt r+             l + ++DA +h + ++   +p   e+ + +g + lsGG+ qRl i  aL k   + ++DE  + LD+e   +  + ++r
  MMETSP1061-20121228|6115_1 402 EIIVLLGENGTGKTTFVRMLAGLQKSDEqEKLQKDGYDYEASQAGVPDLNVSYKPQKISpKFKGTTRQL------------LHKRIRDAYVHPQFVSdvmKPLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKR 549
                 5689*******************98765167999************************857****9963............33445555555554431115778999999**********************99*************9976554444443 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0069      0.35     364     395 ..     114     145 ..     103     148 .. 0.88
   2 !   15.5   0.0   2.3e-05    0.0012     476     538 ..     235     303 ..     226     316 .. 0.73
   3 ?    4.0   0.0     0.066       3.3     345     389 ..     373     424 ..     355     450 .. 0.73
   4 !   30.0   0.0   8.9e-10   4.5e-08     469     547 ..     497     578 ..     466     589 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0069
   TIGR02204 364 rpGetvalvGPsGaGkstllelllrfydPqsG 395
                 rpG+++ lvG  G Gkst l++l    +P+ G
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLG 145
                 79********************9876666655 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 2.3e-05
   TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaese....qlvqqaleel..mkgrttlviahrLatv 538
                  LsGG  qr aia   ++ + + ++de  s Ld +      +++++ l +    + r  +v+ h La +
  MMETSP1061-20121228|6115_1 235 VLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRltaaHMIREILVNTkdADRRYVIVVEHDLAVL 303
                 59*******************************986521115566555433113446677778888765 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.066
   TIGR02204 345 fayPa..rpdqkaldgldltvrpGe.....tvalvGPsGaGkstllelllrf 389
                 ++yP+  r+++   +++ l+v+ Ge      + l G  G Gk+t +++l   
  MMETSP1061-20121228|6115_1 373 YSYPSmtRTQTRGKEKFILHVDGGEftdseIIVLLGENGTGKTTFVRMLAGL 424
                 567742266666777888888877532222799***************9755 PP

  == domain 4    score: 30.0 bits;  conditional E-value: 8.9e-10
   TIGR02204 469 llGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleel.m.kgrttlviahrL.atvlkadrivvl 547
                  + +    LsGG  qr+ai  a+ k a + L+de  + Ld+e   +  + +++  m +++t++v+ h +  +   adr+vv 
  MMETSP1061-20121228|6115_1 497 IIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFiMhSKKTAFVVEHDFiMATYLADRVVVY 578
                 45555568*********************************999999999998523257899*****852445679**9996 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.1   1.1e+02      50      72 ..     116     138 ..     113     147 .. 0.87
   2 !   21.6   0.0   3.8e-07   1.9e-05     141     225 ..     212     300 ..     202     307 .. 0.82
   3 !    9.9   0.0    0.0013     0.067      48      74 ..     399     425 ..     377     442 .. 0.83
   4 !   23.8   0.0   8.1e-08   4.1e-06     155     241 ..     495     581 ..     482     616 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.1
   TIGR03415  50 GeilvlmGlsGsGkssllravng 72 
                 G++l l+G  G Gks+ l+ + g
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAG 138
                 88999***********9998765 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 3.8e-07
   TIGR03415 141 rrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPlir...akl.qdellelqkklkktivfvshdl 225
                  r+     +e+ +l++ +++ +  lsGG  qr  +a      +d+ + deP s ld   r   a++ ++ l++ ++  ++ ++ v hdl
  MMETSP1061-20121228|6115_1 212 GRDVYGWAIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRltaAHMiREILVNTKDADRRYVIVVEHDL 300
                 555566678999************************999999**************755522244414556677888889999*****9 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.0013
   TIGR03415  48 eeGeilvlmGlsGsGkssllravngln 74 
                 ++ ei+vl+G  G+Gk++++r + gl+
  MMETSP1061-20121228|6115_1 399 TDSEIIVLLGENGTGKTTFVRMLAGLQ 425
                 5779*******************9997 PP

  == domain 4    score: 23.8 bits;  conditional E-value: 8.1e-08
   TIGR03415 155 aeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegG 241
                 ++  d+ v+ lsGG  qr+ +  a+   ad+ l+deP + ld   r +    + ++  + kkt   v hd+  a  l +r+ + +g 
  MMETSP1061-20121228|6115_1 495 ESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYHGR 581
                 556688899*****************************************************************9999999887764 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.1e-10   5.5e-09      24     211 ..     113     313 ..      94     323 .. 0.72
   2 ?    6.4   0.0     0.024       1.2      27      52 ..     401     426 ..     389     443 .. 0.83
   3 !   11.5   0.0   0.00066     0.033     140     219 ..     503     586 ..     486     602 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.1e-10
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarlladaG.........evtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsa.GanigerllavgarhyGkiraaak..wlekveidaarikpaafsGGmqqrlqiarnlv.trprlvfmeptGGlvsvqarll...llrglvrelgla....viivth.lavarllaqrllvm 211
                  +pG+vlg+vG  G Gkst lk la++  ++ G         e+  + r+ el+ +     e r+ +  +   v+  pr lr +v     +  +r    g+  yG   + a+   l++ ei         +sGG  qr+ ia   + t    +f ep+  l  v+ rl    ++r+++++ + a    vi+v h lav   l++ + v+
  MMETSP1061-20121228|6115_1 113 PRPGQVLGLVGTNGIGKSTALKILAGKSKPNLGrydnppdweEILVHFRGSELQNYFTQILEDRMKATMKMQYVDAIPRVLRGTVKDiLKDRDDRSELEGRDVYGWAIEVAElkHLQNREIRV-------LSGGELQRFAIAACAIqTSDVYMFDEPSSYL-DVKQRLTaahMIREILVNTKDAdrryVIVVEHdLAVLDYLSDFVCVL 313
                 58*************************9998883322222223445567665555544445555556666689***********98615678999**********988777634666666655.......9**********98766144445555998766.566676545688888777665444459999**********9988776 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.024
   TIGR02323  27 GevlgivGesGsGkstllkalaarll 52 
                  e++ ++Ge G+Gk+t++  la+   
  MMETSP1061-20121228|6115_1 401 SEIIVLLGENGTGKTTFVRMLAGLQK 426
                 689999***************98443 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00066
   TIGR02323 140 aafsGGmqqrlqiarnlvtrprlvfm..eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrvves 219
                 +a+sGG  qrl i+ +l  +p  v++  ep+  l s q      ++++++ + + ++ +v h + +a  la+r++v +    +e+
  MMETSP1061-20121228|6115_1 503 QALSGGELQRLAITLALG-KPADVYLidEPSAYLDSEQRINCakVIKRFIMHSKKTAFVVEHdFIMATYLADRVVVYHGRPGIEA 586
                 689**********99986.566665559******9988543346889999999999999999999*********99884445665 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.6e-05    0.0018      25      62 ..     114     153 ..     109     171 .. 0.79
   2 !   11.3   0.0   0.00037     0.019     400     476 ..     232     313 ..     211     324 .. 0.80
   3 !   10.4   0.0    0.0007     0.035      26      52 ..     400     426 ..     385     444 .. 0.86
   4 !   11.7   0.0   0.00028     0.014     124     475 ..     488     577 ..     468     594 .. 0.54

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.6e-05
   TIGR02633  25 raGeivslcGenGaGkstlmkvlsgvy.p.hGtydGeilf 62 
                 r+G++++l G nG Gkst +k+l+g   p  G yd    +
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSkPnLGRYDNPPDW 153
                 79*********************99542424777765544 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00037
   TIGR02633 400 piarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiykli.....nqlaqeGvaiivvsselaevlGlsdrvlvi 476
                  i  lsGG+ q+  +a + +    v ++dep+  +dv  +    ++i     n+  ++   +ivv  +la +  lsd v v+
  MMETSP1061-20121228|6115_1 232 EIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIreilvNTKDADRRYVIVVEHDLAVLDYLSDFVCVL 313
                 5888*********************************877766655510000444445567999999999999999999887 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.0007
   TIGR02633  26 aGeivslcGenGaGkstlmkvlsgvyp 52 
                   ei+ l GenG+Gk+t++++l+g+  
  MMETSP1061-20121228|6115_1 400 DSEIIVLLGENGTGKTTFVRMLAGLQK 426
                 579********************9865 PP

  == domain 4    score: 11.7 bits;  conditional E-value: 0.00028
   TIGR02633 124 llrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhvatkdaealseddiitmmvGreltslypkepheigdvilevenltaydvvnrkikrvddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavlkkfakksrideaaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeG.vaiivvsselaevlGlsdrvlv 475
                 +++ l ++ + +   v+ l +G+ q + i+ al k + + ++depsa l                                                                                                                                                                                                                                                                          + +  k+i++++ +   +  vv  ++     l+drv+v
  MMETSP1061-20121228|6115_1 488 VMKPLTIESIIDNG-VQALSGGELQRLAITLALGKPADVYLIDEPSAYLD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEQRINCAKVIKRFIMHSkKTAFVVEHDFIMATYLADRVVV 577
                 45555555554444.55566666666666666666666666666666555......................................................................................................................................................................................................................................................................44444444444443322202233344444444444444444 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.9e-07   1.5e-05     500     674 ..     116     305 ..      87     317 .. 0.62
   2 !   27.8   0.0   3.9e-09     2e-07     499     684 ..     400     580 ..     390     605 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.9e-07
   TIGR01193 500 nekitlvGlsGsGkstlakllvkffqaesG.........eil..lngkslkdi......dkhelrqlinylPqePfifsGsilenlllgakenvsqeeikk....aveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldl...ltekkiven.llklkd...ktiifvahrlsvakk 674
                  +++ lvG  G Gkst  k+l +  +++ G         eil  + g +l++       d+ +    ++y+   P ++ G++ + l  + +++ s+ e  +    a+e+ae+k    +l+   +     e   +sgG  qr a+a + +  s+v+++de +s ld+   lt  +++ + l++ kd   + +i v h l v + 
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNLGrydnppdweEILvhFRGSELQNYftqileDRMKATMKMQYVDAIPRVLRGTVKDIL--KDRDDRSELEGRDvygwAIEVAELK----HLQ---N----REIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVkqrLTAAHMIREiLVNTKDadrRYVIVVEHDLAVLDY 305
                 56788999999999999999987766655511111111133311445666665111122233333456677777777777776643..3333333333222000144444433....332...2....244579*******************************86666766666551566665333679999999998765 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 3.9e-09
   TIGR01193 499 knekitlvGlsGsGkstlakllvkff.qaesGeillngkslkdidkhelrqlinylPqePf.ifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldl...ltekkivenllklkdktiifvahrlsvakksdkiivldeG 684
                   e i+l+G  G+Gk+t++++l ++   +e+ +++ +g + +  + +     ++y Pq+    f+G+          +++ +++i +a    +  +d+ k pl  ++ + +  +++sgG  qrla++ al  +++v+++de ++ ld    +   k++++++  ++kt   v h + +a      +v+ +G
  MMETSP1061-20121228|6115_1 400 DSEIIVLLGENGTGKTTFVRMLAGLQkSDEQEKLQKDGYDYEASQAGVPDLNVSYKPQKISpKFKGTT---------RQLLHKRIRDAYVHPQFVSDVMK-PLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSeqrINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYHG 580
                 56789999**************9998445667788888898888888888899999998432577765.........44445566666666666667665.77788888888899*******************************964448899********************9999875544455555 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.2   0.00094     0.048     505     536 ..     114     145 ..     111     148 .. 0.89
   2 !   18.2   0.0   2.6e-06   0.00013     617     678 ..     235     304 ..     230     321 .. 0.89
   3 ?    1.5   0.0      0.29        15     507     530 ..     401     424 ..     371     439 .. 0.70
   4 !   17.9   0.0   3.1e-06   0.00016     598     679 ..     483     570 ..     464     588 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00094
   TIGR00958 505 epGevvalVGPsGsGKStvaallenlYqPtgG 536
                 +pG+v  lVG +G GKSt   +l    +P+ G
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLG 145
                 79*****************9999887777766 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 2.6e-06
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDa........eveqllqesksaksrtvlliahrLstve 678
                  lsgG  qr AiA   ++   v + De  S LD+         + ++l ++k a  r v+++ h L +  
  MMETSP1061-20121228|6115_1 235 VLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVkqrltaahMIREILVNTKDADRRYVIVVEHDLAVLD 304
                 69********************************99999888888999999**************99876 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.29
   TIGR00958 507 GevvalVGPsGsGKStvaallenl 530
                  e++ l G +G GK t + +l  l
  MMETSP1061-20121228|6115_1 401 SEIIVLLGENGTGKTTFVRMLAGL 424
                 35679**************99766 PP

  == domain 4    score: 17.9 bits;  conditional E-value: 3.1e-06
   TIGR00958 598 dFiselekg..ydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstvek 679
                 +F+s++ k   ++  +++  + lsgG  qr+Ai  AL +   v ++De  + LD+    ++ +++++   ++++t  ++ h   ++  
  MMETSP1061-20121228|6115_1 483 QFVSDVMKPltIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSeqriNCAKVIKRFIMHSKKTAFVVEHDFIMATY 570
                 6888776542277778877788*********************************998889999999999999999999998766654 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   1.2     3e-09   1.5e-07      25     219 ..     115     314 ..     112     319 .. 0.74
   2 !   11.9   0.0   0.00048     0.024      23      51 ..     398     426 ..     382     436 .. 0.84
   3 ?    7.4   0.0     0.011      0.56     144     215 ..     504     576 ..     476     584 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 3e-09
   TIGR01978  25 kGevhaimGpnGsGkstLskvlaghekyevtsGe.........iklkgqdllelev...eeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvD....alkivaegvnklree.ekalliithyerllelikPdvvhvll 219
                 +G+v  ++G+nG Gkst  k+lag++k ++ + +         ++++g++l++  +   e+r +    + +q+   ip v     lr +++ + k r+++  + le +++   ++e+ el+ +l++R++ +  sGGe +r  i   a+ + ++ + De  s lDv     a +++ e + + ++  ++ ++++ h   +l++++ d+v vl+
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLGRYDnppdweeilVHFRGSELQNYFTqilEDRMK--ATMKMQYVDAIPRV-----LRGTVKDILKDRDDR--SELEGRDVYGWAIEVAELK-HLQNREIRV-LSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKqrltAAHMIREILVNTKDAdRRYVIVVEHDLAVLDYLS-DFVCVLY 314
                 799999*******************998875432222222333889999998865511145555..45789999999987.....555555555444444..3455555666677777765.689999976.9*******************************963333778888887777777466788999********96.8888875 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00048
   TIGR01978  23 vkkGevhaimGpnGsGkstLskvlaghek 51 
                  +  e+ +++G nG+Gk t +++lag +k
  MMETSP1061-20121228|6115_1 398 FTDSEIIVLLGENGTGKTTFVRMLAGLQK 426
                 567799*******************9776 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.011
   TIGR01978 144 GfsGGekkrneilqlalleP.klaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvv 215
                   sGGe +r  i  lal +P ++ ++De  + lD +     a++++++  + +k+  ++ h   +  +++  vv
  MMETSP1061-20121228|6115_1 504 ALSGGELQRLAIT-LALGKPaDVYLIDEPSAYLDSEQRINCAKVIKRFIMHsKKTAFVVEHDFIMATYLADRVV 576
                 57********997.566666379999********9998899999999877657788889998888888764443 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00046     0.023    1962    1989 ..     113     140 ..      91     147 .. 0.84
   2 !   14.5   0.0   1.2e-05    0.0006    1046    1133 ..     220     313 ..     202     352 .. 0.81
   3 !   18.0   0.0   1.1e-06   5.4e-05     953    1132 ..     398     577 ..     392     599 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00046
   TIGR01257 1962 vrpgecfgllgvngagktttfkmltgdt 1989
                   rpg+++gl+g ng gk+t++k+l+g +
  MMETSP1061-20121228|6115_1  113 PRPGQVLGLVGTNGIGKSTALKILAGKS 140 
                  59***********************976 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 1.2e-05
   TIGR01257 1046 ledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysr....rsiwdlllkyr..sgrtiimsthhmdeadllgdriaii 1133
                  +e + l+h +n e + lsgg  +++++a + +  + v ++dep+s +d   r    + i ++l++ +    r +i+  h +   d l d ++++
  MMETSP1061-20121228|6115_1  220 IEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRltaaHMIREILVNTKdaDRRYVIVVEHDLAVLDYLSDFVCVL 313 
                  677899**************9999************************998833224578888766511568999999*********9999876 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 1.1e-06
   TIGR01257  953 fyenqitaflghngagktttlsiltgllpptsgtvl.vggkdietnldavrq.slgmcpqhnilfhhltvaehilfyaqlkgrsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllky..rsgrtiimsthhmdeadllgdriai 1132
                  f +++i  +lg ng+gktt + +l+gl        l   g d e++   v +  +   pq+  +  ++  +   l++ +++  ++   q+  + m     +    ++  q lsgg  ++l++++a+   a v ++dep++ +d   r     ++ ++  +s +t  +  h +  a  l dr+ +
  MMETSP1061-20121228|6115_1  398 FTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQEKLqKDGYDYEASQAGVPDlNVSYKPQK--ISPKFKGTTRQLLHKRIRD-AYVHPQFVSDVMK-PLTIESIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFimHSKKTAFVVEHDFIMATYLADRVVV 577 
                  6788899999999999999999999998876655541678999988777754144455554..3333334444455566654.4455666666554.555777788889999999999999999999999999999999999999998888888775336889999999999999999999865 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   4.4e-08   2.2e-06     481     569 ..     229     321 ..     213     332 .. 0.79
   2 !   19.7   0.0   8.7e-07   4.4e-05     826     891 ..     502     565 ..     474     588 .. 0.69

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 4.4e-08
   TIGR00630 481 leraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrD..n.erLi.etlkrlrdlGn.tlivvehDeetir.eaDyvvdiGPgaGehG 569
                  +r+++ lsGGe qr ++a+   +  +  +Y++DePs  L  +   +  ++i e+l++ +d     +ivvehD  ++   +D+v  +   aG +G
  MMETSP1061-20121228|6115_1 229 QNREIRVLSGGELQRFAIAA--CAIQTSDVYMFDEPSSYLDVKQrlTaAHMIrEILVNTKDADRrYVIVVEHDLAVLDyLSDFVCVLYGTAGAYG 321
                 479*************9997..46678889*******887655411323455368899999875269********9973589*999999999998 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 8.7e-07
   TIGR00630 826 attLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlv.dkGntvvviehnl 891
                 +++LsGGe qr+ ++  L k +    +y++DeP++ L  +   +  +v++r++ ++ +t  v+eh++
  MMETSP1061-20121228|6115_1 502 VQALSGGELQRLAITLALGKPA---DVYLIDEPSAYLDSEQRINCAKVIKRFImHSKKTAFVVEHDF 565
                 4567777777776666666655...367777777777777766677777665414556667777764 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00063     0.032     481     513 ..     114     146 ..      94     148 .. 0.86
   2 !   16.4   0.0   8.9e-06   0.00045     593     655 ..     235     303 ..     224     316 .. 0.80
   3 ?    0.5   0.0      0.59        30     482     511 ..     400     429 ..     389     444 .. 0.77
   4 !   13.5   0.0   6.7e-05    0.0034     585     637 ..     496     548 ..     482     585 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00063
   TIGR01846 481 kaGeviGivGpsGsGkstltkllqrlyvPekGr 513
                 ++G+v+G+vG+ G Gkst  k+l     P+ Gr
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLGR 146
                 79********************99988888887 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 8.9e-06
   TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei......ckgrtviiiahrlstv 655
                  lsGG  qr a+a   ++   + ++de  s ld +   +  + +rei      +  r vi++ h l+ +
  MMETSP1061-20121228|6115_1 235 VLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREIlvntkdADRRYVIVVEHDLAVL 303
                 69*******************************998766666666662222223458899999998766 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.59
   TIGR01846 482 aGeviGivGpsGsGkstltkllqrlyvPek 511
                 + e+i + G+ G+Gk+t+ ++l  l   ++
  MMETSP1061-20121228|6115_1 400 DSEIIVLLGENGTGKTTFVRMLAGLQKSDE 429
                 5688999**************998876554 PP

  == domain 4    score: 13.5 bits;  conditional E-value: 6.7e-05
   TIGR01846 585 tevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlr 637
                   +++   alsGG  qr+a++ al +   + ++de  + ld e      + ++
  MMETSP1061-20121228|6115_1 496 SIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIK 548
                 455555568****************999*************887654444444 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.017      0.84     787     812 ..     114     139 ..     112     160 .. 0.93
   2 !   10.5   0.0   0.00035     0.018     204     260 ..     230     286 ..     201     320 .. 0.80
   3 !   17.1   0.0   3.4e-06   0.00017      67     283 ..     381     577 ..     344     582 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.017
   TIGR00956 787 kPGkltALmGasGAGkttLlnvLaeR 812
                 +PG++  L+G+ G Gk t l +La++
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGK 139
                 7**********************987 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00035
   TIGR00956 204 ndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilk 260
                 n  +R +sGGe +R +ia   + ++ ++++D+ +  LD    l  +++++++   +k
  MMETSP1061-20121228|6115_1 230 NREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMIREILVNTK 286
                 6669**********************************9877777777776654444 PP

  == domain 3    score: 17.1 bits;  conditional E-value: 3.4e-06
   TIGR00956  67 kekeskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeikkhyrgdvvYsaetdvHlpsltvketLdfaarlktpqnRvkgvsreeyakkladvvlaiyGLs.....htkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvv 283
                 ++++ k++ il+   g    +e++v+LG+ g+G++t+++ +a+  +  +   + k++ dg++ e                +  +p l v+       + +  + + kg +r+   k+++d ++    +s      t +  + ++ v  +sGGe +R++i+ +l  +a ++++D+ +  LDs   ++ +k++k  +  +k+ta+v  +     +y l d+vvv
  MMETSP1061-20121228|6115_1 381 TQTRGKEKFILHVDGGEFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDE---QEKLQKDGYDYEAS--------------QAGVPDLNVS------YKPQKISPKFKGTTRQLLHKRIRDAYVHPQFVSdvmkpLTIE-SIIDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATY-LADRVVV 577
                 4455555666666666788889999999999999999998887543322...45566666554322..............2334555443......333333333333344444444333333322222000001222.2345568899***********9999999**************************999999999998777776666.5566654 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.94        47     360     390 ..     115     145 ..     111     149 .. 0.88
   2 !   14.7   0.0   3.8e-05    0.0019     471     514 ..     235     278 ..     224     313 .. 0.78
   3 ?    1.3   0.0      0.43        22     362     397 ..     402     438 ..     391     445 .. 0.76
   4 !   23.6   0.0   7.8e-08   3.9e-06     465     530 ..     498     565 ..     469     590 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.94
   TIGR01192 360 agqtvaivgptgagkttlinllqrvydpksg 390
                  gq + +vg  g gk+t + +l    +p+ g
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGKSKPNLG 145
                 6999*****************9988888877 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3.8e-05
   TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetearvkdai 514
                  lsgge qr aia   ++ + + ++de +s ldv+      + i
  MMETSP1061-20121228|6115_1 235 VLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRLTAAHMI 278
                 49********************************9766555444 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.43
   TIGR01192 362 qtvaivgptgagkttlinllqrvydpk.sgqilidgv 397
                 + + ++g  g+gktt++ +l  + + + + ++  dg 
  MMETSP1061-20121228|6115_1 402 EIIVLLGENGTGKTTFVRMLAGLQKSDeQEKLQKDGY 438
                 678999************9987766541345555665 PP

  == domain 4    score: 23.6 bits;  conditional E-value: 7.8e-08
   TIGR01192 465 vgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaid..alrknrttfiiahrl 530
                 + +  + lsgge qrlai+ a+ k a + ++de ++ ld e  +   + i    ++ ++t+f++ h +
  MMETSP1061-20121228|6115_1 498 IDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKrfIMHSKKTAFVVEHDF 565
                 4445567**************************************99999843567899*****9975 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.9e-06   9.6e-05      31     214 ..     116     313 ..     104     319 .. 0.70
   2 ?    1.8   0.0      0.41        21      31      61 ..     401     431 ..     379     447 .. 0.77
   3 !   14.6   0.0   5.4e-05    0.0027     139     217 ..     503     581 ..     483     598 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.9e-06
   TIGR02314  31 gqifgvigasgagkstlircvnllekptsga.........vivd..gkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrk.vt.ellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpat....tqsilellkeinrrlgltillithemdvvkricdevavi 214
                 gq++g++g+ g gkst ++ +    kp  g          ++v   g +l +   +++ ++r +  m +q+ + +  r + g v   l+     + +++ + v    + +  l + ++     lsgg+ qr aia        v + de +s ld       ++ i e+l +        ++++ h++ v+  + d v v+
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAGKSKPNLGRydnppdweeILVHfrGSELQNY-FTQILEDRMKATMKMQYVDAI-PRVLRGTVKDILKD-RDDRSELEGRdVYgWAIEVAELKHLQNREIRVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQrltaAHMIREILVNTKDADRRYVIVVEHDLAVLDYLSDFVCVL 313
                 9*****************99988777776642222222225554226666554.3689999*********99987.57777777766654.44444444331431345666788888888999*************9999***************754111133344444333333344577899*****99999999987 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.41
   TIGR02314  31 gqifgvigasgagkstlircvnllekptsga 61 
                  +i+ ++g  g+gk+t++r +  l+k  + +
  MMETSP1061-20121228|6115_1 401 SEIIVLLGENGTGKTTFVRMLAGLQKSDEQE 431
                 4688899************999888876654 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 5.4e-05
   TIGR02314 139 snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkg 217
                   lsgg+ qr+ai+ al     v l de ++ ld        +++k    + + t +++ h++ +   + d+v v ++ 
  MMETSP1061-20121228|6115_1 503 QALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMATYLADRVVVYHGR 581
                 579********************************99999999999999999999999999999999999999887655 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00019    0.0098     345     396 ..      88     145 ..      77     149 .. 0.83
   2 ?    0.1   0.1      0.96        49     468     529 ..     234     299 ..     198     312 .. 0.72
   3 !   14.5   0.0   4.1e-05    0.0021     350     399 ..     384     433 ..     371     447 .. 0.79
   4 ?    5.0   0.0     0.031       1.6     467     540 ..     502     576 ..     483     582 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00019
   TIGR01194 345 sykdvessegfalGpidlrias......GelvyivGenGcGkstliklllGlyipqeG 396
                  +kd e+  +   Gp  +++++      G+++ +vG nG Gkst +k+l G  +p+ G
  MMETSP1061-20121228|6115_1  88 LPKDLEGNTTHRYGPNSFKLHRlpsprpGQVLGLVGTNGIGKSTALKILAGKSKPNLG 145
                 57888999999999999888855555569**********************9999877 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.96
   TIGR01194 468 tdlstGqrkrlalvnayleerpvllldewaadqdpafk...rvfyeellpdlkrrG.ktilvishd 529
                   ls G+ +r+a+ +  ++   v+++de ++  d   +     +  e+l + k    + ++v+ hd
  MMETSP1061-20121228|6115_1 234 RVLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQRltaAHMIREILVNTKDADrRYVIVVEHD 299
                 47999*********999***********99877766541112355677766665541456667776 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 4.1e-05
   TIGR01194 350 essegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGell 399
                 ++ e f l       ++ e++ ++GenG Gk+t++++l Gl +  e e l
  MMETSP1061-20121228|6115_1 384 RGKEKFILHVDGGEFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQEKL 433
                 5556666665556677899**********************998877654 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.031
   TIGR01194 467 ttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddry.feladrli 540
                   +ls G+ +rla+  a  +   v+l+de +a  d   +    + +   +    kt +v+ hd      ladr++
  MMETSP1061-20121228|6115_1 502 VQALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQRINCAKVIKRFIMHSKKTAFVVEHDFIMaTYLADRVV 576
                 459*******************************98765555555555667788999999999654134777765 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.3e-06   0.00011     761     893 ..     236     370 ..     226     386 .. 0.78
   2 !   13.9   0.0   2.8e-05    0.0014     754     824 ..     497     567 ..     398     603 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.3e-06
   TIGR00957 761 lsggqkqrvslaravysdadiyllddplsavdah...vakhifekvigpkgllknktrilvthgisylpq.vdviivlsdgkisemgsyqelldrdgafaeflrtyasaedeldaeddgvasvsaedkeaklvedgl 893
                 lsgg+ qr ++a +    +d+y++d+p s +d +    a h++ +++  +     +  i+v h ++ l    d++ vl  g     g     ++    +  fl  + ++e+ +  +++  + + +e  ea + ed +
  MMETSP1061-20121228|6115_1 236 LSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKqrlTAAHMIREILVNTKDADRRYVIVVEHDLAVLDYlSDFVCVLY-GTAGAYGVVTMPFSVRQGINAFLAGFIPTENLRFRNESL-SFKVSERAEADRKEDLM 370
                 8****************************999763336899999999888888999999*******9987258888876.556667776665555555677999999999888777774.44445566777666665 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.8e-05
   TIGR00957 754 igekgv.nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisy 824
                 i ++gv  lsgg+ qr++++ a+   ad+yl+d+p + +d+        kvi    +  +kt  +v h + +
  MMETSP1061-20121228|6115_1 497 IIDNGVqALSGGELQRLAITLALGKPADVYLIDEPSAYLDSEQR-INCAKVIKRFIMHSKKTAFVVEHDFIM 567
                 455666359*******************************9854.456899999999999999999998643 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.44        22    1244    1265 ..     115     136 ..     108     147 .. 0.74
   2 !    9.0   0.0   0.00087     0.044     548     583 ..     235     270 ..     222     346 .. 0.74
   3 !   16.9   0.0   3.6e-06   0.00018     542     621 ..     498     579 ..     401     583 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.44
   TIGR01271 1244 agqrvgllgrtgsgkstllsal 1265
                  +gq +gl+g  g gkst l  l
  MMETSP1061-20121228|6115_1  115 PGQVLGLVGTNGIGKSTALKIL 136 
                  6778888888888888777544 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00087
   TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvt 583
                  lsgg+  r ++a +  + +d+y++d p syldv  
  MMETSP1061-20121228|6115_1 235 VLSGGELQRFAIAACAIQTSDVYMFDEPSSYLDVKQ 270
                 59*******************************953 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 3.6e-06
   TIGR01271 542 lgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclck..ll.anktrilvtskl.ehlkkadkilllh 621
                 + +g  +lsgg+  r++++ a+ k ad+yl+d p +yld   e+ i  + + k  ++ ++kt  +v   +      ad++++ h
  MMETSP1061-20121228|6115_1 498 IDNGVQALSGGELQRLAITLALGKPADVYLIDEPSAYLDS--EQRINCAKVIKrfIMhSKKTAFVVEHDFiMATYLADRVVVYH 579
                 4556668********************************5..555555545442244245666666554313344566666555 PP

>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   3.5   7.1e-08   3.6e-06      94     174 ..       8      97 ..       3     109 .. 0.73

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 7.1e-08
   TIGR01944  94 aldaeaekekekkvalideeeCi..GC.tkCiqaCPvD.....aivGaaka.mhtvledlCtgCdlCvepCPvdcielrpvaeelkswkw 174
                 + +++++  +  ++a+++ ++C    C ++C + CPv       i  ++k  +  + e lC+gC +Cv++CP +++++++ +++l+  + 
  MMETSP1061-20121228|6115_1   8 SKNNDKGDATLTRIAIVNAAKCKpkKCnQECKKSCPVVklgklCIEVTPKSkLAFIAEPLCIGCGICVKKCPFEAVNIINLPKDLEGNTT 97 
                 456666777889999999999963347357******962322245456665155566779********************9999887654 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.014      0.72      75     103 ..     112     140 ..      90     144 .. 0.80
   2 !   12.8   0.0   0.00022     0.011      47     108 ..     367     430 ..     348     442 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.014
   TIGR00064  75 eekkpnvillvGvNGvGKTttiaKlakll 103
                 + +  +v+ lvG NG+GK t++  la + 
  MMETSP1061-20121228|6115_1 112 SPRPGQVLGLVGTNGIGKSTALKILAGKS 140
                 555668999************99888765 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 0.00022
   TIGR00064  47 kellkeelkealkeileketklel..kelkeekkpnvillvGvNGvGKTttiaKlakllkkegk 108
                 ++l+k++   ++++++++ +++ +      e +   +i+l G NG+GKTt +  la l k++++
  MMETSP1061-20121228|6115_1 367 EDLMKSYSYPSMTRTQTRGKEKFIlhVDGGEFTDSEIIVLLGENGTGKTTFVRMLAGLQKSDEQ 430
                 344444444444444433333333323445667889****************999988777665 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.04         2    1071    1146 ..     231     308 ..     223     325 .. 0.70
   2 !   13.8   0.0   3.6e-05    0.0018    1073    1133 ..     502     561 ..     500     576 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.04
   TIGR02169 1071 qrleamSGGEKsltALsfifAiQrykPspfYafDEvDmfLDgvNvervaklike...kakeaQ...fivvslrkpmleaAdr 1146
                  + +  +SGGE    A++   AiQ    s +Y+fDE   +LD       a++i+e   + k+a     ivv +  ++l++ + 
  MMETSP1061-20121228|6115_1  231 REIRVLSGGELQRFAIAA-CAIQT---SDVYMFDEPSSYLDVKQRLTAAHMIREilvNTKDADrryVIVVEHDLAVLDYLSD 308 
                  568889****99988885.69997...99************76555555555442225555532226777777777766555 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 3.6e-05
   TIGR02169 1073 leamSGGEKsltALsfifAiQrykPspfYafDEvDmfLDg...vNvervaklikekakeaQfiv 1133
                  ++a+SGGE  l  L++  A+   kP+ +Y++DE  ++LD    +N  +v+k+   ++k++ f+v
  MMETSP1061-20121228|6115_1  502 VQALSGGE--LQRLAITLALG--KPADVYLIDEPSAYLDSeqrINCAKVIKRFIMHSKKTAFVV 561 
                  69******..88999999996..8***************6444899999999999*****9987 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.034       1.7     197     221 ..     115     139 ..     104     147 .. 0.83
   2 !    9.8   0.0     0.003      0.15     193     222 ..     397     425 ..     366     434 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.034
   TIGR03499 197 kggviaLvGptGvGKTTTlAKLAar 221
                  g+v+ LvG  G+GK T l  LA +
  MMETSP1061-20121228|6115_1 115 PGQVLGLVGTNGIGKSTALKILAGK 139
                 577999************9888876 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.003
   TIGR03499 193 eilekggviaLvGptGvGKTTTlAKLAarf 222
                 e+ + + +i+L+G  G GKTT +  LA   
  MMETSP1061-20121228|6115_1 397 EFTDSE-IIVLLGENGTGKTTFVRMLAGLQ 425
                 555555.**************888888655 PP

>> TIGR02179  PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   5.8   1.6e-05   0.00079      20      75 ..      22      86 ..       4      88 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.6e-05
   TIGR02179 20 PvvdkekCi..kCk.lCvlyCp.....eaaikekeek.kveidYdyCkGCgiCaeeCpvkaiemv 75
                 +v+  kC   kC+  C   Cp       +i+++ ++  + i    C GCgiC+++Cp++a++++
  MMETSP1061-20121228|6115_1 22 AIVNAAKCKpkKCNqECKKSCPvvklgKLCIEVTPKSkLAFIAEPLCIGCGICVKKCPFEAVNII 86
                467777774336752588888844332347777654426678889****************9876 PP

>> TIGR04105  FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   6.7   1.2e-05   0.00063     116     164 ..      34      88 ..      16      93 .. 0.54

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.2e-05
   TIGR04105 116 ClakkCieaCpkg.....aisv..vekkayidkekCieCGkCkkaCpYnAiveler 164
                 C +++C+++Cp+      +i+v  ++k a i +  Ci CG C+k Cp++A+  ++ 
  MMETSP1061-20121228|6115_1  34 C-NQECKKSCPVVklgklCIEVtpKSKLAFIAEPLCIGCGICVKKCPFEAVNIINL 88 
                 2.234444444321222234442245667777777777777777777777766655 PP

>> TIGR02951  DMSO_dmsB: dimethylsulfoxide reductase, chain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   2.8   0.00014    0.0073      67     114 ..      34      85 ..       8      93 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 0.00014
   TIGR02951  67 cedpacvkacptgamyk.....reedGlvlvdqdkciGckycalacpygapqy 114
                 c +  c k+cp   + k       ++ l ++ +  ciGc  c+ +cp++a ++
  MMETSP1061-20121228|6115_1  34 C-NQECKKSCPVVKLGKlcievTPKSKLAFIAEPLCIGCGICVKKCPFEAVNI 85 
                 4.4578899998766553222257889999*******************9876 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00037     0.019      26      66 ..     384     426 ..     375     435 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00037
   TIGR03015  26 kahkralayleyGlsereGfilitGevGaGkttlvrnl..lkk 66 
                 +++++ + +++ G   ++  i++ Ge G+Gktt+vr l  l+k
  MMETSP1061-20121228|6115_1 384 RGKEKFILHVDGGEFTDSEIIVLLGENGTGKTTFVRMLagLQK 426
                 66777778888888889999****************9833333 PP

>> TIGR02512  FeFe_hydrog_A: [FeFe] hydrogenase, group A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   5.5   0.00022     0.011       4      68 ..      24      84 ..      21      98 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00022
   TIGR02512  4 idvskCilCerCvkaCekvqevkalkalneklktevatkleklldeseCisCGqCvlvCpvgait 68
                ++++kC+  ++C + C+k   v +l++l  +   + + ++   ++e  Ci+CG Cv  Cp++a++
  MMETSP1061-20121228|6115_1 24 VNAAKCK-PKKCNQECKKSCPVVKLGKLCIEV--TPK-SKLAFIAEPLCIGCGICVKKCPFEAVN 84
                5678885.356666666666664443333222..222.2335678899***************97 PP

>> TIGR02936  fdxN_nitrog: ferredoxin III, nif-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.3       7.6   3.9e+02      54      86 ..      11      42 ..       5      46 .. 0.70
   2 !   14.2   0.1   0.00015    0.0076      17      43 ..      62      88 ..      53      99 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 7.6
   TIGR02936 54 eddeeiekkvmvlaneenCiGCeaCarvCpkkc 86
                +d+++++ + +++ n+++C   + C++ C k+c
  MMETSP1061-20121228|6115_1 11 NDKGDATLTRIAIVNAAKCK-PKKCNQECKKSC 42
                55566666677888888886.467888888877 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 0.00015
   TIGR02936 17 sideekCigCgrCfkvCgrdvlelkgl 43
                 i e  CigCg C k C+ + +++ +l
  MMETSP1061-20121228|6115_1 62 FIAEPLCIGCGICVKKCPFEAVNIINL 88
                577788999999999999887777665 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.2     0.028       1.4       1      22 [.     118     139 ..     118     144 .. 0.89
   2 ?    4.8   0.0     0.097       4.9       1      21 [.     403     423 ..     403     519 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.028
   TIGR00152   1 iigltGgigsGKstvakilkdk 22 
                 + gl+G  g GKst +kil+ k
  MMETSP1061-20121228|6115_1 118 VLGLVGTNGIGKSTALKILAGK 139
                 689****************876 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.097
   TIGR00152   1 iigltGgigsGKstvakilkd 21 
                 ii l G  g+GK+t +++l+ 
  MMETSP1061-20121228|6115_1 403 IIVLLGENGTGKTTFVRMLAG 423
                 7899*************9975 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0    0.0018     0.093     108     144 ..     114     150 ..     105     183 .. 0.86
   2 ?   -0.3   0.0       1.2        61     111     132 ..     402     423 ..     391     434 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0018
   TIGR00602 108 kkkriLLitGPsGCgKsTvikiLsKelgikvqewlNp 144
                 ++ ++L + G  G gKsT++kiL+ +  +++  + Np
  MMETSP1061-20121228|6115_1 114 RPGQVLGLVGTNGIGKSTALKILAGKSKPNLGRYDNP 150
                 4678********************9999988888888 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 1.2
   TIGR00602 111 riLLitGPsGCgKsTvikiLsK 132
                  i+ + G  G gK+T +++L+ 
  MMETSP1061-20121228|6115_1 402 EIIVLLGENGTGKTTFVRMLAG 423
                 688999*************985 PP

>> TIGR03880  KaiC_arch_3: KaiC domain protein, AF_0351 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   0.00039      0.02      10      34 ..     395     419 ..     390     430 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00039
   TIGR03880  10 gGGliegsvivviGeaGtGkttlsl 34 
                 gG + + ++iv++Ge GtGktt+  
  MMETSP1061-20121228|6115_1 395 GGEFTDSEIIVLLGENGTGKTTFVR 419
                 577999****************965 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.2      0.16       8.3     479     501 ..     116     138 ..     104     273 .. 0.73
   2 ?    2.7   0.0      0.14         7     480     502 ..     402     424 ..     350     437 .. 0.80
   3 ?    0.3   0.0      0.73        37     575     602 ..     496     522 ..     466     567 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.16
   TIGR00954 479 GnhlLiiGPnGcGKsslfRilge 501
                 G+ l ++G nG GKs   +il++
  MMETSP1061-20121228|6115_1 116 GQVLGLVGTNGIGKSTALKILAG 138
                 66777889999999999999876 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.14
   TIGR00954 480 nhlLiiGPnGcGKsslfRilgel 502
                 + ++++G nG GK  + R+l++l
  MMETSP1061-20121228|6115_1 402 EIIVLLGENGTGKTTFVRMLAGL 424
                 456789***************98 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.73
   TIGR00954 575 davqdWkdvLsgGekqRiamARlfyHkP 602
                 +++ +  + LsgGe qR+a+  l   kP
  MMETSP1061-20121228|6115_1 496 SIIDNGVQALSGGELQRLAIT-LALGKP 522
                 577788899*********985.445555 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0    0.0013     0.068      22      43 ..     401     422 ..     386     428 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.0013
   TIGR00150  22 atvvlLkGdlGaGKttlvkgll 43 
                 +++++L G+ G+GKtt+v+ l+
  MMETSP1061-20121228|6115_1 401 SEIIVLLGENGTGKTTFVRMLA 422
                 5799999***********9765 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0     0.001     0.052     154     194 ..     388     431 ..     343     435 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.001
   TIGR01447 154 k....vavalalksnfslitGGPGTGKTttvarlllalikqskaq 194
                 k    v     + s+++++ G  GTGKTt v r+l+ l+k+ +++
  MMETSP1061-20121228|6115_1 388 KfilhVDGGEFTDSEIIVLLGENGTGKTTFV-RMLAGLQKSDEQE 431
                 244445555678899************9876.8999999988775 PP

>> TIGR02700  flavo_MJ0208: archaeoflavoprotein, MJ0208 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   6.2     0.002       0.1     147     195 ..      28      84 ..      12      91 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.002
   TIGR02700 147 rkkcklce.kcvdacprea.......iskkdgvveirllkclGcGkckevcpynaik 195
                 + k k+c+  c ++cp          ++ k   ++i    c+GcG+c + cp +a++
  MMETSP1061-20121228|6115_1  28 KCKPKKCNqECKKSCPVVKlgklcieVTPKSKLAFIAEPLCIGCGICVKKCPFEAVN 84 
                 333456642588888864311111113446778899999***************985 PP

>> TIGR03336  IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   7.4    0.0018     0.092     547     595 .]      24      83 ..       5      83 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0018
   TIGR03336 547 vdeekCi..kCkk.....C.ikelgCPaie..eedkevvidkl.CsgCgvCvqvCpvdai 595
                 v+  kC+  kC++     C + +lg  +ie  ++ k ++i++  C+gCg+Cv+ Cp++a+
  MMETSP1061-20121228|6115_1  24 VNAAKCKpkKCNQeckksCpVVKLGKLCIEvtPKSKLAFIAEPlCIGCGICVKKCPFEAV 83 
                 55555532244431000223233554455576788888887656*************996 PP

>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   5.6    0.0059       0.3      77     100 ..      62      85 ..       2     102 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0059
   TIGR01971  77 einlgrCifCglCeevCPtdaivl 100
                  i    Ci Cg+C+  CP +a+++
  MMETSP1061-20121228|6115_1  62 FIAEPLCIGCGICVKKCPFEAVNI 85 
                 366666777777777777666543 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       7.4   3.8e+02      29      46 ..     117     134 ..     101     136 .. 0.72
   2 ?    8.7   0.1    0.0023      0.12      16      45 ..     385     418 ..     383     423 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 7.4
   TIGR03185  29 piiLlgglNGaGKTTlLd 46 
                 +++ l g NG GK T L+
  MMETSP1061-20121228|6115_1 117 QVLGLVGTNGIGKSTALK 134
                 4666789********986 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0023
   TIGR03185  16 grqevdLsvsse....kpiiLlgglNGaGKTTlL 45 
                 g++++ L+v        +ii l g+NG+GKTT++
  MMETSP1061-20121228|6115_1 385 GKEKFILHVDGGeftdSEIIVLLGENGTGKTTFV 418
                 55566666655555558999999*********97 PP

>> TIGR02912  sulfite_red_C: sulfite reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.1    0.0068      0.34     174     217 ..      35      82 ..       8      87 .. 0.68

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0068
   TIGR02912 174 cgacvkvckkkavgalsleny...k.vvreeekcigcgecvlkcptga 217
                  + c k+c     g l +e     k +   e  cigcg cv+kcp  a
  MMETSP1061-20121228|6115_1  35 NQECKKSCPVVKLGKLCIEVTpksKlAFIAEPLCIGCGICVKKCPFEA 82 
                 367888888888888877643111225567889************887 PP

>> TIGR03287  methan_mark_16: putative methanogenesis marker 16 metalloprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   5.1     0.013      0.65     295     348 ..      29      84 ..      16      90 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.013
   TIGR03287 295 lrvkynperCl.nCkvClveekCPveaikk.dkeldtedCfgCGvCaeiCpsgvve 348
                  ++k  +++C+  C v ++ + C   + k   + + +  C gCG+C++ Cp ++v+
  MMETSP1061-20121228|6115_1  29 CKPKKCNQECKkSCPVVKLGKLCIEVTPKSkLAFIAEPLCIGCGICVKKCPFEAVN 84 
                 344443444431466666667775444433266778889************99876 PP

>> TIGR02060  aprB: adenylylsulfate reductase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   4.3      0.02      0.99       4      64 ..      23      85 ..      21      90 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.02
   TIGR02060  4 fvdpekcdgckalektacvyicp....ndlm.tldkekrkaynrepdmcwecyscvkicpqgaidv 64
                +v+  kc   k   + +c++ cp      l   +  + + a+  ep +c  c  cvk cp +a+++
  MMETSP1061-20121228|6115_1 23 IVNAAKCKPKK--CNQECKKSCPvvklGKLCiEVTPKSKLAFIAEP-LCIGCGICVKKCPFEAVNI 85
                57788887544..334566666621114443134445566888888.8***************986 PP

>> TIGR02163  napH_: ferredoxin-type protein, NapH/MauN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   5.8      0.02         1     190     252 ..      16      84 ..      13      87 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.02
   TIGR02163 190 ksllkiaaedkekCd..kCm.dClevCpekqvlelalkk...eestlvlsgdCisCgrCidvCeedvle 252
                 ++l +ia+ +++kC+  kC  +C + Cp+ +  +l  +    ++   + +  Ci Cg C+  C+ ++++
  MMETSP1061-20121228|6115_1  16 ATLTRIAIVNAAKCKpkKCNqECKKSCPVVKLGKLCIEVtpkSKLAFIAEPLCIGCGICVKKCPFEAVN 84 
                 556677777777774337853799999998875544443332677789999************988876 PP

>> TIGR00397  mauM_napG: MauM/NapG family ferredoxin-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   1.2       2.4   1.2e+02     159     198 ..      11      56 ..       5      62 .. 0.66
   2 ?   12.3   0.3   0.00038     0.019      54      75 ..      67      88 ..      58     101 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 2.4
   TIGR00397 159 piknergllqipvvdsakct..gcg.tcekhc...vlseaairvlp 198
                 + k +  l +i +v++akc    c   c+k c    l++ +i v p
  MMETSP1061-20121228|6115_1  11 NDKGDATLTRIAIVNAAKCKpkKCNqECKKSCpvvKLGKLCIEVTP 56 
                 456677888999******9722454258888843225556666665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 0.00038
   TIGR00397 54 acvrcglcveacpldilklasw 75
                 c+ cg+cv++cp++ +++ + 
  MMETSP1061-20121228|6115_1 67 LCIGCGICVKKCPFEAVNIINL 88
                4888888888888887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       314  (0.076548); expected 82.0 (0.02)
Passed bias filter:                      290  (0.0706972); expected 82.0 (0.02)
Passed Vit filter:                       151  (0.0368113); expected 4.1 (0.001)
Passed Fwd filter:                        81  (0.0197465); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              81  [number of targets reported over threshold]
# CPU time: 1.57u 0.18s 00:00:01.75 Elapsed: 00:00:01.25
# Mc/sec: 691.62
//
Query:       MMETSP1061-20121228|6118_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1061-20121228|6120_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 942.78
//
Query:       MMETSP1061-20121228|6122_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1968.84
//
Query:       MMETSP1061-20121228|6124_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 437.96
//
Query:       MMETSP1061-20121228|6125_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 575.47
//
Query:       MMETSP1061-20121228|6126_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1139.91
//
Query:       MMETSP1061-20121228|6131_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1061-20121228|6130_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-20   70.5   0.0    6.2e-20   69.8   0.0    1.2  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
     0.0018   16.4   0.0     0.0042   15.2   0.0    1.6  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0019   15.6   0.0      0.003   15.0   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
  ------ inclusion threshold ------
       0.24    6.7  21.9       0.39    6.1  15.2    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
       0.61    6.2   7.6       0.85    5.8   5.3    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   0.0   7.5e-23   6.2e-20      19     209 ..      70     278 ..      68     282 .. 0.85

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 7.5e-23
   TIGR00080  19 vikskrvldalksveReeFvpealkeaayedaaleigygqtisaphmvakmlelLelk..agakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkk.........LeldnvivkegDGrkGf....eekaPydailvtaaskeiPkaLidq.LeeGGklvlPveeveeqvlkrve...krngeiiikvvekvlfvPlv 209
                 vi s+ v  a+++v+R+ Fvp+  ++ a++d++ + g +  isaph+ + ++e Lelk  ag +vL+ G+G+GY++ + a+++g   +   +e  e++ e+++  +            e  n+  ++g+  +      e    +d+i+++a+ +++   + ++ L+ GG lv Pv++   q++  ++   + n+ +  kv+  v+f Pl 
  MMETSP1061-20121228|6130_1  70 VISSPDVEAAFRNVDRKWFVPKDCQDIAHKDQPIRDG-NIHISAPHIYGSVVEALELKkdAGYSVLNAGSGTGYLTCIAASILGPRSVHHCVEIHEDVLEHSKEAIAAwkeatasssGEVSNIDFIHGNALELTtnkgECALGFDRIYIGASIEKLNLYMFKKmLKPGGVLVGPVDDELIQIVRSLSehaQGNQLFSTKVLSGVRFAPLL 278
                 6789999**************************9966.789***************97225789*********************999999**99********999888889999998999*******975443000044458*************988775439************87887766541114568899***********96 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   5.1e-06    0.0042      12     119 ..     120     240 ..     110     244 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.1e-06
   TIGR02469  12 LakLrlkkgd..vllDiGaGtGsvtieaarlvpkgrv.yaierneealeliee.......Nlrrf..gvsnieivegdapkaeeds...leeadavfvgGsgkklkeileaverrlrpggriv 119
                 +++L+lkk++   +l+ G+GtG +t  aa +++  +v  ++e +e++le  +e         +    +vsni+ ++g+a + + ++      +d++ +g s +kl+  l + +++l+pgg++v
  MMETSP1061-20121228|6130_1 120 VEALELKKDAgySVLNAGSGTGYLTCIAASILGPRSVhHCVEIHEDVLEHSKEaiaawkeATASSsgEVSNIDFIHGNALELTTNKgecALGFDRIYIGASIEKLN--LYMFKKMLKPGGVLV 240
                 6788999887779************8888888774442677666555555444000000044444456888888888887555554446889********998876..678999******998 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.6e-06     0.003      43     148 ..     127     240 ..     118     248 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.6e-06
   TIGR02752  43 vqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkd.........aklenvelvhgnamelpyedn....sfdyvtigfglrnvpdylqvlkemarvvkpggkvv 148
                  ++g ++l+   gt+  +   a  +g++   + +++ e++l+ +ke +++          +++n++++hgna+el  ++      fd + ig  + ++  y+     +++++kpgg +v
  MMETSP1061-20121228|6130_1 127 KDAGYSVLNAGSGTGYLTCIAASILGPRSVHHCVEIHEDVLEHSKEAIAAwkeatasssGEVSNIDFIHGNALELTTNKGecalGFDRIYIGASIEKLNLYM-----FKKMLKPGGVLV 240
                 5679999**********99999999*99999999999999988887665311111111146899***********998752333599999999999999888.....456678999776 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  15.2   0.00048      0.39     931    1030 ..     451     554 ..     443     560 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00048
   TIGR00927  931 deeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeee...eeeeeeeeeeeeeeeeeeeeeneeplslewpetrqkqaiylf.llpivfp 1030
                   +ee+ dd + + e  e++ n +++++  ++++  d++ + d  d +e e+     eeee++++++++++++e+e++  ls+   ++r+  + ++   +p+ fp
  MMETSP1061-20121228|6130_1  451 GDEEMGDDGDEDFEFSEDDNNNDDDDDNGDNDDNNDNDSDDDSDDDDEMEDaveHLEEEEDNDNDDDDDDDDESEDDGSLSVASNDSRHAPSHFIAeTIPMFFP 554 
                  34444455555555555555555555554444444444444433333333311033445555556666777788888889998888887766555324666666 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   5.3     0.001      0.85     322     380 ..     472     533 ..     368     563 .. 0.51

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.001
   TIGR02442 322 eekkleekkeeakpdeekedeseekekeeskkqe......eeepgkddekeedekeeaeeeaesa 380
                 ++++ ++ ++ +++d+++ d+s   ++++++++       ee++++dd++++d ++e +++ + a
  MMETSP1061-20121228|6130_1 472 NDDDDDNGDNDDNNDNDSDDDS---DDDDEMEDAvehleeEEDNDNDDDDDDDDESEDDGSLSVA 533
                 1111111111111222222222...1111111112223223344444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.49
# Mc/sec: 1527.30
//
Query:       MMETSP1061-20121228|6128_1  [L=936]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-05   20.8   1.0      0.047   10.9   0.1    2.2  2  TIGR03729 acc_ester: putative phosphoesterase
  ------ inclusion threshold ------
      0.032   11.8   0.0      0.076   10.6   0.1    1.5  2  TIGR00619 sbcd: exonuclease SbcCD, D subunit


Domain annotation for each model (and alignments):
>> TIGR03729  acc_ester: putative phosphoesterase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00014       0.3      30      82 ..     614     672 ..     595     683 .. 0.78
   2 !   10.9   0.1   2.3e-05     0.047     195     223 ..     785     813 ..     729     823 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00014
   TIGR03729  30 kkkidilliaGDis.Ndf..kkslafieklqel...keikvtflaGNHdllkdlteeel 82 
                  k i   +++GDi+  d+  +k   f+  l ++    ei++   aGNHd+ k+   +++
  MMETSP1061-20121228|6128_1 614 AKGIRAVVLVGDIAyPDYdgRKWDTFFDFLDDQsnfDEIPLMVAAGNHDIDKQYAGNQI 672
                 45799999****96268876788899999999888899************988877776 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 2.3e-05
   TIGR03729 195 flGseklgkllekyeikavifGHlHrrkk 223
                 f   e+l+ l+ +y+++ v++GH+H  ++
  MMETSP1061-20121228|6128_1 785 FAAKEHLEPLFVNYHVNLVLTGHVHAYQR 813
                 445799*******************8765 PP

>> TIGR00619  sbcd: exonuclease SbcCD, D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   3.7e-05     0.076      24      95 ..     603     671 ..     594     680 .. 0.75
   2 ?   -3.8   0.0      0.96     2e+03      49      81 ..     734     765 ..     734     766 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.7e-05
   TIGR00619  24 qkafLddlleilkaeqvDallvAGDv.FDkanPpaeaqelfaaflaklsdanplpivvisGNHDsadrlsaak 95 
                  +++L+ + + +k   + a+++ GD+ +++   +      f++fl   s+ + +p++v +GNHD  ++  +++
  MMETSP1061-20121228|6128_1 603 SQEVLNHIRDHAK--GIRAVVLVGDIaYPDY--DGRKWDTFFDFLDDQSNFDEIPLMVAAGNHDIDKQYAGNQ 671
                 5666666666554..4667777788536666..4566678************************988876665 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.96
   TIGR00619  49 vFDkanPpaeaqelfaaflaklsdanplpivvi 81 
                 ++ +++P++ + e + ++la + + +  p v++
  MMETSP1061-20121228|6128_1 734 AYADMSPGSTQYEWLENELASIDREK-TPWVLL 765
                 5888999999999********99999.888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (936 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.12s 00:00:00.59 Elapsed: 00:00:00.57
# Mc/sec: 2130.03
//
Query:       MMETSP1061-20121228|6138_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|6134_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   10.8   0.0      0.063   10.1   0.0    1.2  1  TIGR03946 viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent


Domain annotation for each model (and alignments):
>> TIGR03946  viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   1.5e-05     0.063     257     300 ..     208     252 ..     182     257 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.5e-05
   TIGR03946 257 eaaealdaliklidaklrevvldqGdvafidnrravhGr.rafra 300
                 + ae +  li+  ++  +ev l  Gd++f +  +  hGr r+f+ 
  MMETSP1061-20121228|6134_1 208 DDAEPWPILIEDFQGITHEVTLTSGDLLFYESSKCFHGRpRPFNG 252
                 4567788999*****************************778875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1643.86
//
Query:       MMETSP1061-20121228|6135_1  [L=1380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.13s 00:00:00.66 Elapsed: 00:00:00.53
# Mc/sec: 3436.70
//
Query:       MMETSP1061-20121228|6140_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-15   54.0   0.1    3.3e-15   54.0   0.1    1.0  1  TIGR01297 CDF: cation diffusion facilitator family transporter


Domain annotation for each model (and alignments):
>> TIGR01297  CDF: cation diffusion facilitator family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.1   7.9e-19   3.3e-15      12      81 ..       2      72 ..       1      77 [] 0.93

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 7.9e-19
   TIGR01297 12 nlllmvveivggllagSlAllaDaaHslsDvaaliiallalrisrkpaderhpfGygraeiLaallnal.f 81
                n+l+  +++ +++ +gS +++a+ +Hs++D+ + +++l++lr  r  ad+rhp+Gyg+  +++al++al +
  MMETSP1061-20121228|6140_1  2 NMLICTAKLGAWISSGSSSMMAEFVHSVVDCGNQALLLIGLRDTRNAADKRHPYGYGKSVYFWALVSALgT 72
                789999*************************************************************9943 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 534.90
//
Query:       MMETSP1061-20121228|6142_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 555.74
//
Query:       MMETSP1061-20121228|6145_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 583.53
//
Query:       MMETSP1061-20121228|6147_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   12.5   2.3      0.051   11.8   1.6    1.4  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.6   1.3e-05     0.051      57     104 ..       9      59 ..       6      60 .. 0.45

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.3e-05
   TIGR03685  57 aaaapvaaaaaaaaaaeaaeeekeeee...eeeeekeeeeeealegLgaLF 104
                 +aa  ++aaaaa+a++++++++k++++     ++       +a+e+L+a++
  MMETSP1061-20121228|6147_1   9 TAASSAPAAAAASASQSDKNKNKNKNDggaCADDWTMARIMQAMETLTAVY 59 
                 344444455555555555555444444222333333444445556666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 512.12
//
Query:       MMETSP1061-20121228|6146_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 628.52
//
Query:       MMETSP1061-20121228|6150_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1061-20121228|6148_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 1007.92
//
Query:       MMETSP1061-20121228|6152_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-07   27.7   7.9    1.9e-05   22.0   2.4    3.8  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    3.2e-06   24.5   1.3      0.007   13.7   0.0    2.9  3  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
  ------ inclusion threshold ------
      0.034   11.8   0.0      0.068   10.9   0.0    1.5  1  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   2.4   1.4e-08   1.9e-05      32     144 ..      49     178 ..       1     189 [. 0.86
   2 ?    1.7   0.1     0.023        31     144     159 ..     199     215 ..     180     224 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.4e-08
   TIGR03848  32 reqaaalaerladlpiaaivssPlercretveaiaear.......................glevavderltevdYGdWtGrelkeLakeeLwkvvqahpsaavfPgGealaevqaravaavreldarleeehgpd 144
                 r q +++  rl+++   aiv+s l r++et++  a+a                        +  +++d rl e  +GdW+G +  +   +++wk   + ps +v  g e++ +v  ra   v e+d+rl++e g++
  MMETSP1061-20121228|6152_1  49 RGQQSDTNGRLRGI---AIVASDLLRAKETAQIAADAIhshnsqqgsdgdgggddddvplySGAIVIDTRLRERGFGDWDGGS--DAHYHDVWKDDAKDPSHTV-RGVESVWSVTDRATRCVLEWDQRLAAEAGDT 178
                 33556677777777...6899**********999998788899999****9999998887767789***************86..66789***********998.588**********************999875 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.023
   TIGR03848 144 davwvav.shgDviksv 159
                 +  wv++ +hgDv++ +
  MMETSP1061-20121228|6152_1 199 HLYWVVCvAHGDVLQIL 215
                 556766538****9754 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.1   0.00023      0.31      26      67 ..      28      84 ..      21      94 .. 0.64
   2 !   13.7   0.0   5.2e-06     0.007      70     133 ..     110     169 ..     102     176 .. 0.82
   3 ?   -0.8   0.0      0.14     2e+02     139     154 ..     203     218 ..     197     237 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00023
   TIGR03162 26 ekgeeqaaalrekl...............edvkfdavvsSplsRcrelAellaeklk 67
                e+g++qa+++ ++l                + +  a+v+S+l R++e+A++ a++ +
  MMETSP1061-20121228|6152_1 28 EEGKKQAQKAGDQLvrdfldargqqsdtnGRLRGIAIVASDLLRAKETAQIAADAIH 84
                5555555555555555555555544443333344579*************9886544 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 5.2e-06
   TIGR03162  70 iekddrLrEmdfGdwEgksydeisekypeldawakdlaharvpgGEsvadfsqRveefleelak 133
                 i +d rLrE  fGdw+g s ++  +    +++ akd+ h +v g Esv  ++ R ++++ e  +
  MMETSP1061-20121228|6152_1 110 IVIDTRLRERGFGDWDGGSDAHYHDV---WKDDAKDPSH-TVRGVESVWSVTDRATRCVLEWDQ 169
                 5689*************997776666...7777888776.57899*********9999877665 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.14
   TIGR03162 139 vlivtHgGvirallah 154
                 v+ v+Hg v+++l + 
  MMETSP1061-20121228|6152_1 203 VVCVAHGDVLQILQTA 218
                 6789******998765 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     5e-05     0.068      22      68 ..      25      84 ..      11      95 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5e-05
   TIGR00249 22 qLtkkGkdeaervaqwLkkag.............veldrilvSplvRAeqtaeivadald 68
                 L+++Gk++a++ ++ L +                +   i+ S l+RA++ta+i ada++
  MMETSP1061-20121228|6152_1 25 GLSEEGKKQAQKAGDQLVRDFldargqqsdtngrLRGIAIVASDLLRAKETAQIAADAIH 84
                58999999998777655443334444777777655555799***************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1115.08
//
Query:       MMETSP1061-20121228|6155_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 236.19
//
Query:       MMETSP1061-20121228|6156_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 682.90
//
Query:       MMETSP1061-20121228|6160_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1632.50
//
Query:       MMETSP1061-20121228|6162_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 477.67
//
Query:       MMETSP1061-20121228|6161_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2998.04
//
Query:       MMETSP1061-20121228|6159_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2281.53
//
Query:       MMETSP1061-20121228|6165_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 2088.53
//
Query:       MMETSP1061-20121228|6167_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       420  (0.102389); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1765.92
//
Query:       MMETSP1061-20121228|6163_1  [L=1599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   15.3   0.1      0.006   14.1   0.0    1.5  1  TIGR00671 baf: pantothenate kinase, type III


Domain annotation for each model (and alignments):
>> TIGR00671  baf: pantothenate kinase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.5e-06     0.006      98     176 ..    1137    1215 ..    1119    1247 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.5e-06
   TIGR00671   98 elGaDrvvnalaAielygkavvVVdaGtAl..tidlvdeegkilGgaIapGlaislealkdraaalpkvelarpeevlgkd 176 
                  elG Drvvn+ a    +g    VV +  A+  ++ +v  +++++Gg  + Gl  ++    +  a l ++ +++ +e+ +k 
  MMETSP1061-20121228|6163_1 1137 ELG-DRVVNLCASGIPFGARGTVVGIHKATtgCVEIVM-DEEFVGGTTLQGLCSNFRGKLAVWAHLMRITVENNKEITDKH 1215
                  477.**************99666666555511566677.9*************************************9994 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.63u 0.14s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 5411.55
//
Query:       MMETSP1061-20121228|6166_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1429.88
//
Query:       MMETSP1061-20121228|6168_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13    9.2  63.9      0.068   10.2   1.5    5.1  4  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   7.8    0.0025        10     239     294 ..      19      82 ..       7      85 .. 0.67
   2 ?    8.0   2.7   7.9e-05      0.32     267     310 ..      89     130 ..      78     162 .. 0.77
   3 ?   10.2   1.5   1.7e-05     0.068     249     305 ..     259     312 ..     228     343 .. 0.65
   4 ?    3.8  15.5    0.0014       5.8     103     240 ..     369     508 ..     362     512 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0025
   TIGR00601 239 ateaasGedpleflrn...qpqfqqlRq..vvqq...nPelLealLqqigkenPqLlqqisqhq 294
                 +t+  +G++  +++rn   q+q+qq+ q  ++qq   nPel+  ++q   + nPqL+q ++ ++
  MMETSP1061-20121228|6168_1  19 MTNPMGGQSLEDMMRNppsQEQMQQMMQspMMQQmmdNPELMRQMMQFSMQSNPQLRQLMESNP 82 
                 4444455555568887222445555544344443555********************9988876 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 7.9e-05
   TIGR00601 267 qnPelLealLqqigkenPqLlqqisqhqEeFlqllnEpveeleg 310
                 +nPe+L+ ++q +  +nP Llqq +++qE  ++ l + +++ + 
  MMETSP1061-20121228|6168_1  89 NNPEMLDQMIQMM--RNPSLLQQAQRNQELAMSQLENMPGGFSA 130
                 7*********986..8*************999988887777444 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 1.7e-05
   TIGR00601 249 leflrnqpqfqq.lRqvvqqnPelLealLqqigkenPqLlqqisqhqEeFlqllnEpv 305
                 le+ +++p +qq + q+v+qnP+++    q + ++nP  +q    ++    +++   +
  MMETSP1061-20121228|6168_1 259 LEM-LDNPVLQQmMQQMVDQNPDAI---RQSLEAQNPMFRQMFAGNPQMANNMVRQMM 312
                 444.466777762689******865...567777888888887777765555554433 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.0014
   TIGR00601 103 pasvaekksaaPasaveeessaeeeatatalese.dtsaesegdsdretlvvGsereetveeimemGyeree.verAlRAafnnPdRAveYLltGiPedleaaepaaaeqpseaaastetpqeddvaaaaaqaeteeaat 240
                 ++s ++++s++Pa   +   ++ ++ +    ++  +ts++ + + +r++      + + ++ + +mG++ e+   + l   + n +RAv+ Ll+G P     +   +   +s+a +++++++++   ++a+ +++++++t
  MMETSP1061-20121228|6168_1 369 ASSSSSSSSTPPAPDFATMMQQMQAMMGGGGAPFgATSSQQQQQQQRQQQHPADRYRSQLNSLRDMGFDDEQqCLAVLQQNHGNLNRAVDVLLMGPPSPPSLSSSSSPSSSSSAPVPASAAASAPAPESASSSSSTTTTT 508
                 34455555556665555555555555544444431333444455667788889999************9876267889******************99998777777777777777777777777777776555444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.26
# Mc/sec: 2660.09
//
Query:       MMETSP1061-20121228|6164_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 2485.79
//
Query:       MMETSP1061-20121228|6170_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 2132.13
//
Query:       MMETSP1061-20121228|6172_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 959.92
//
Query:       MMETSP1061-20121228|6171_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 2129.82
//
Query:       MMETSP1061-20121228|6174_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 583.53
//
Query:       MMETSP1061-20121228|6173_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-42  143.1   0.0      3e-42  142.4   0.0    1.3  1  TIGR01169 rplA_bact: ribosomal protein L1
    7.1e-21   72.4   0.0    1.5e-20   71.3   0.0    1.5  2  TIGR01170 rplA_mito: ribosomal protein L1, mitochondrial


Domain annotation for each model (and alignments):
>> TIGR01169  rplA_bact: ribosomal protein L1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.0   1.5e-45     3e-42      24     201 ..     142     323 ..     121     328 .. 0.85

  Alignments for each domain:
  == domain 1    score: 142.4 bits;  conditional E-value: 1.5e-45
   TIGR01169  24 aiellkelstakfdetvevaiklgvdprksdqqvRgsvvLPngtgksvrvlvfakg.ekaeeAkeaGAdlvGsedliekikkgeldfDv...viatpdmmkkv.gklgkvLGprgLmPnpktgtvtadvakavkelk..kGkvefradkagiihvsigkvsfeeeklkenlealleaikkakPsa 201
                  ie + e  +   +et+++ai+l+vdpr+  q +RgsvvLP+gtgk+v  +vf+++ +++eeAk+ G +  G+e+l+++i +ge  +D    ++at + ++ v  +l+++LGprgLmPnpkt+tv ++  + +  l+  +  v +r++  gi+h++igk +f  ++l+enl+++++a++ akP +
  MMETSP1061-20121228|6173_1 142 GIEDVGE--YRNQNETIDLAINLNVDPRRPGQALRGSVVLPHGTGKTVSCIVFTSDpSTIEEAKTQGHE-AGGEELVDRILAGEASIDSyqrALATKESLPLVqKQLARLLGPRGLMPNPKTNTVFDEGGALLDALReqSSTVTYRTESGGILHFPIGKGDFTPKQLTENLQVICQAVQDAKPEQ 323
                 5554444..45689****************************************983568999999987.6999********98877753338**********446*******************99987777776522578*****************************************86 PP

>> TIGR01170  rplA_mito: ribosomal protein L1, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0   7.5e-24   1.5e-20      19     131 ..     151     271 ..     139     280 .. 0.88
   2 ?   -3.8   0.0       1.1   2.3e+03       6      28 ..     349     371 ..     347     373 .. 0.77

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 7.5e-24
   TIGR01170  19 spkqsvnldielkmelgkes..vqgvlslPkpfakeikiavFtkgaseveearekaslvGgedLikkIkdgeikl..fdyvialpdiveeLa.klaklLgkkgllPsvkrgtvsdd...la 131
                 ++++++ l i+l+ + +++   ++g++ lP+  +k    +vFt + s  eea+ + + +Gge+L+  I  ge ++  ++ ++a++++++  + +la+lLg++gl+P++k +tv d+   l 
  MMETSP1061-20121228|6173_1 151 NQNETIDLAINLNVDPRRPGqaLRGSVVLPHGTGKTVSCIVFTSDPSTIEEAKTQGHEAGGEELVDRILAGEASIdsYQRALATKESLPLVQkQLARLLGPRGLMPNPKTNTVFDEggaLL 271
                 67889999999999988887545************************************************988888**************99********************99844433 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 1.1
   TIGR01170   6 avkylkeasislvspkqsvnldi 28 
                  +ky  +a+   ++ k+sv ld+
  MMETSP1061-20121228|6173_1 349 NIKYWLKAHLAATQGKGSVRLDL 371
                 57777788888889999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1959.53
//
Query:       MMETSP1061-20121228|6175_1  [L=663]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-208  691.7   0.1   2.2e-207  687.6   0.1    2.0  1  TIGR00337 PyrG: CTP synthase
    6.1e-07   26.5   0.0    0.00041   17.2   0.0    2.2  2  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    8.6e-05   19.8   0.0    0.00039   17.7   0.0    2.0  2  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
     0.0059   14.3   0.6      0.021   12.5   0.0    2.0  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
  ------ inclusion threshold ------
      0.027   12.2   0.1       0.13   10.0   0.0    2.0  2  TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
      0.032   11.8   0.0      0.088   10.4   0.0    1.7  2  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
      0.037   11.0   2.1      0.033   11.1   0.1    1.7  2  TIGR00750 lao: LAO/AO transport system ATPase


Domain annotation for each model (and alignments):
>> TIGR00337  PyrG: CTP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  687.6   0.1  3.7e-210  2.2e-207       3     525 ..      68     653 ..      66     654 .. 0.95

  Alignments for each domain:
  == domain 1    score: 687.6 bits;  conditional E-value: 3.7e-210
   TIGR00337   3 akyivvtGGvvsslGkGitaaslgrllkalglkvtiikidpylnidaGtlsPlehGevfvlddGaetdldlGhyerfldteltkennittGkiyskvlekerkGdylGktvqviPhitdeikdrikrvak............................seadvviveiGGtvGdieslpfleairqlkkevgkenvlfihvtlvPyikaagelktkPtqhsvkelrslGiqPdiiicrseeelkkelkekialfcdveeeavieakdvesiyevPlllkkeklddlllkrlkleek...........................eadlseweelveklaeskeevkialvGkyvelkdaylsvkealkhaalkldlkvnikwidsedleeeeaellee...vdgilvPGGfGerGveGkilaikyarenkiPflGiclGlqvaviefarnvlglkeanstefdeetkep...vvallpeqkdkedlGgtmrlGayevklkeeslakklygke.evkerhrhryevnnelleeleekGlivsgks..edgklveiielk..dhpffvatqfhPefksrveepsklflglvk 525
                  k++vvtGGvvs++GkG+ta+slg l++ +gl+vt++kidpyln+daGt+sP ehGev+vlddG+e dldlG+yerfl+++lt+ +n+ tGkiy++v+e+er G+ylG+tvqv+Phi d+i++++ +va+                              ++++ive+GGt+Gdies+pf+ea+rql+++vg +n+ f+hv+lvP i++  e+ktkPtqhsvk++ +lG+ Pd + +r ++++++  ++k++++  v+++a+i++ dv+++y+vPl++ ++++ ++l++rl+l                              ++ +++w+++ +++++++ e +ia+vGky++ +day+sv +al ha++++++kv++++id++dl ++++e+ ++    dg+lvPGGfG+rG+eG+i+a++yare k Pf+GiclG+q aviefar+v+g+ +an++ef+++       vv ++pe+  ++ +GgtmrlGa+e++l+e+sla++ly+ +  ++erhrhryevn+ +++++e+ Gl++sgk+  ++g+++e+iel+  +hp+f+a qfhPef+sr+e+p++lflgl++
  MMETSP1061-20121228|6175_1  68 RKLVVVTGGVVSGIGKGVTASSLGVLFRGMGLRVTALKIDPYLNVDAGTMSPGEHGEVYVLDDGGECDLDLGNYERFLGVSLTRASNLSTGKIYQQVIERERVGEYLGQTVQVVPHISDAIQEWVLNVARepvahvveendtetetetetehsgadqnLPPEICIVELGGTLGDIESMPFVEALRQLQENVGYKNMCFLHVSLVPEING--EQKTKPTQHSVKTMMQLGLRPDFLCVRGKTPIEDGARKKLSIMTSVPKTAIISLYDVSNTYRVPLVMMEQNIPSMLAQRLRLPLPelesattkgggvvyhkpaeeetckiddHTVIKNWKQFADSVDNPQGECSIAFVGKYIQETDAYVSVLKALDHAGVATNQKVHVEFIDASDLGDKDEETYKRmeaCDGVLVPGGFGSRGIEGMIEAVRYARETKTPFFGICLGMQAAVIEFARSVAGIPNANTAEFEDDLAPDeedVVIIMPETG-TKRMGGTMRLGARETTLREGSLARELYRGSeIITERHRHRYEVNPVFVDKFESLGLRFSGKNtdDTGERMEVIELDrsEHPYFIAGQFHPEFTSRPEKPNPLFLGLLQ 653
                 699******************************************************************************************************************************99999*************999998877555579*********************************************99..**********************************************************************************9888999*********************998899************************************************************99886555544449*************************************************************997554455*******98.99*************************7652789**************************86115578******96448**************************986 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   6.9e-07   0.00041     216     257 ..     465     505 ..     452     515 .. 0.86
   2 !    7.0   0.0   0.00089      0.52     323     360 ..     616     656 ..     569     657 .. 0.60

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 6.9e-07
   TIGR01368 216 npdgillsnGPGdPaaveeaietvkklleakiPifGIclGhq 257
                   dg+l+  G G  + +e +ie v+ + e+k+P+fGIclG q
  MMETSP1061-20121228|6175_1 465 ACDGVLVPGGFGS-RGIEGMIEAVRYARETKTPFFGICLGMQ 505
                 349****999997.789***********************99 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00089
   TIGR01368 323 egle..hkelp.vfsvQyHPeaspGphdteylFdefvelik 360
                 e +e  ++e p +++ Q+HPe ++ p+  + lF  ++++ik
  MMETSP1061-20121228|6175_1 616 EVIEldRSEHPyFIAGQFHPEFTSRPEKPNPLFLGLLQQIK 656
                 3332113334416799*****************99999887 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.7e-07   0.00039      41      93 ..     465     517 ..     442     536 .. 0.83
   2 ?   -1.6   0.0      0.55   3.2e+02     154     168 ..     623     638 ..     593     645 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 6.7e-07
   TIGR00888  41 epkgiilsGgPesvkaenaekvdekifelgvPvlGiCyGmqllakalGgever 93 
                 +  g+++ Gg  s   e++ ++ ++  e + P +GiC+Gmq+ +  +  +v+ 
  MMETSP1061-20121228|6175_1 465 ACDGVLVPGGFGSRGIEGMIEAVRYARETKTPFFGICLGMQAAVIEFARSVAG 517
                 4589**************************************99988888764 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.55
   TIGR00888 154 eekkly.GvqfhPevt 168
                 +e++ +   qfhPe t
  MMETSP1061-20121228|6175_1 623 SEHPYFiAGQFHPEFT 638
                 444433245*****86 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   3.5e-05     0.021      30      83 ..     459     506 ..     437     519 .. 0.76
   2 ?   -1.2   0.2      0.57   3.3e+02     174     182 ..     628     636 ..     624     641 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.5e-05
   TIGR01855  30 dskelekadklvlPGVGafkeamkklrelelellaekvvkkkkpvlgiClGmQl 83 
                 + k++e +d +++PG G  + +++ + e      ++ ++++k+p+ giClGmQ 
  MMETSP1061-20121228|6175_1 459 TYKRMEACDGVLVPG-GFGSRGIEGMIEA-----VRYARETKTPFFGICLGMQA 506
                 457788889999997.5555555555543.....26778999***********5 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.57
   TIGR01855 174 ivgvQFHPE 182
                 +++ QFHPE
  MMETSP1061-20121228|6175_1 628 FIAGQFHPE 636
                 6789****9 PP

>> TIGR03800  PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00022      0.13      11      80 ..     440     504 ..     433     518 .. 0.85
   2 ?   -1.5   0.0      0.74   4.3e+02     163     174 ..     628     639 ..     622     642 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00022
   TIGR03800  11 vrehikalealgveavvvkrledldeidglilPGGesttlskllektglleplreliksglPvfGtcaGl 80 
                  + h++ ++a+++  +   + + ++  dg+++PGG      +     g++e +r + ++  P fG c G+
  MMETSP1061-20121228|6175_1 440 QKVHVEFIDASDLGDKDEETYKRMEACDGVLVPGGFGS---R--GIEGMIEAVRYARETKTPFFGICLGM 504
                 56799999999999999999999************754...2..335899999999999********998 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.74
   TIGR03800 163 vlassfhPeltd 174
                 ++a +fhPe+t 
  MMETSP1061-20121228|6175_1 628 FIAGQFHPEFTS 639
                 68899****996 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00015     0.088      59      92 ..     478     512 ..     418     524 .. 0.63
   2 ?   -3.4   0.0       2.5   1.4e+03     155     175 ..     615     636 ..     597     638 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00015
   TIGR00566  59 eaaissleliehl.aGklPilGvClGhqalaqafG 92 
                  +   ++e+++ +   k P +G+ClG qa    f 
  MMETSP1061-20121228|6175_1 478 RGIEGMIEAVRYArETKTPFFGICLGMQAAVIEFA 512
                 333345677776525799**********9776655 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.5
   TIGR00566 155 ieimairhrdlple.GvqfhPe 175
                  e++ + + + p +   qfhPe
  MMETSP1061-20121228|6175_1 615 MEVIELDRSEHPYFiAGQFHPE 636
                 566666666666542569**99 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   5.7e-05     0.033      20      79 ..      52     115 ..      37     120 .. 0.77
   2 ?   -2.1   0.1      0.59   3.5e+02     240     279 ..     174     213 ..     159     226 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.7e-05
   TIGR00750  20 akellkrilpktGra..hvvGltG..vPGaGkstlveklieelrrrGlkvaviavDPsspftGG 79 
                 ++  l++++ +t +a  + v +tG  v G+Gk    + l+  +r  Gl+v+ + +DP   +  G
  MMETSP1061-20121228|6175_1  52 SRPTLQELIDETNEAnrKLVVVTGgvVSGIGKGVTASSLGVLFRGMGLRVTALKIDPYLNVDAG 115
                 6666777777666551156888886679*****************************8777666 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.59
   TIGR00750 240 lkksGkleekrrersveelkklveeevlkkvkakeevyrd 279
                 l ++ ++  +  + ++e++ ++++e v++ v+++ ++ ++
  MMETSP1061-20121228|6175_1 174 LGQTVQVVPHISDAIQEWVLNVAREPVAHVVEENDTETET 213
                 4555555556677889999999999999999988764433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 2134.36
//
Query:       MMETSP1061-20121228|6176_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 1595.52
//
Query:       MMETSP1061-20121228|6178_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 2018.94
//
Query:       MMETSP1061-20121228|6179_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-09   34.6   0.5    4.8e-09   34.5   0.3    1.1  1  TIGR02052 MerP: mercuric transport protein periplasmic component
    7.1e-09   33.6   0.5    8.3e-09   33.4   0.4    1.1  1  TIGR00003 TIGR00003: copper ion binding protein


Domain annotation for each model (and alignments):
>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.3   2.3e-12   4.8e-09      31      74 ..       9      52 ..       2      69 .. 0.89

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 2.3e-12
   TIGR02052 31 gmtcaacPitvktalkkvdGvekaevsfkqklavvtfddektnv 74
                gmtc  c  +vk+ lkk++Gv+ +  + + k +vvt+dd+    
  MMETSP1061-20121228|6179_1  9 GMTCDGCANAVKRILKKIEGVTEIVTDVDAKSVVVTHDDSVQPS 52
                8**************************************97655 PP

>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.4     4e-12   8.3e-09       8      53 ..       9      53 ..       3      61 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 4e-12
   TIGR00003  8 gmsCnHCVdkiEkfVGeleGVsavkvdlekekvvVeFdapkvsaee 53
                gm+C+ C +++ +   ++eGV  +  d+++++vvV  d   v+   
  MMETSP1061-20121228|6179_1  9 GMTCDGCANAVKRILKKIEGVTEIVTDVDAKSVVVTHDDS-VQPSL 53
                9*************************************98.87665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 401.47
//
Query:       MMETSP1061-20121228|6177_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   10.9   1.4      0.089   10.0   0.0    2.0  2  TIGR03943 TIGR03943: TIGR03943 family protein


Domain annotation for each model (and alignments):
>> TIGR03943  TIGR03943: TIGR03943 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   2.2e-05     0.089      47      92 ..      35      81 ..      19     110 .. 0.56
   2 ?   -1.7   0.6      0.08   3.3e+02      74      88 ..     256     270 ..     220     299 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.2e-05
   TIGR03943 47 hehktklkrrlvylllllpillgllvppaalgsdtaaqrglaf.ssl 92
                 ++k++ ++ + ++++ll+++l+ll++++++  ++++++ +++  + 
  MMETSP1061-20121228|6177_1 35 LRRKKRTNKTALWCVVLLVLVLLLLISSPSSAKSMLQHQTTTTtDTE 81
                34444555555555555555555555555555555555544442222 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.08
   TIGR03943  74 paalgsdtaaqrgla 88 
                 +++ +s+t  q++ +
  MMETSP1061-20121228|6177_1 256 KPTARSTTKIQNNKN 270
                 222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       354  (0.0862994); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.40
# Mc/sec: 1267.10
//
Query:       MMETSP1061-20121228|6184_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 217.78
//
Query:       MMETSP1061-20121228|6181_1  [L=2285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.14s 00:00:01.02 Elapsed: 00:00:00.98
# Mc/sec: 3077.50
//
Query:       MMETSP1061-20121228|6183_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-17   59.5   0.0    3.9e-17   59.2   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.7e-05   20.8   0.0    7.8e-05   20.1   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   1.9e-20   3.9e-17       1     244 [.     341     572 ..     341     606 .. 0.89

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 1.9e-20
   TIGR03903   1 etghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqRaasaealaerf 244
                 +t++  a+k+l++d+  +  +v   + e ++   ++hP iv +    ++ d  l+ v +y +G  l   L   G  p        + ++ a++  h+  +++RDLkP+n+++     + h ++ DFG++  +             ++ + G+P+Y aPe L         D ++ G ++ e LtG +    +   e l+ ++   ++  P ++ +    ++LR  l kd+  R  s ++ ae +
  MMETSP1061-20121228|6183_1 341 KTSQMFALKVLKKDNIIKRNQVEHTKTERSVLGYVKHPFIVGMNMAFQSRD-KLYFVLDYCAGGELFFHLGKLGKFPEPRSRFYSAEIILAISYVHSLDIIYRDLKPENVLLD---GSGHIRLTDFGLSKEGIS--S----SSSGANSFCGTPEYLAPEILNRQGHGRGVDWWSLGALLYEMLTGLPPFYCQD-RERLFEKIRKSELHYPASLSSTS-KHLLRGLLTKDPTRRLGSGPKDAEEI 572
                 59999************************************9987777777.8888*******************************************************95...5568999*****964433..3....44678899*************************************9998776.677999*************9876.79************998888776665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   3.8e-08   7.8e-05      95     138 ..     423     467 ..     349     477 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.8e-08
   TIGR03724  95 llkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                 +  e+  +++ +H+ +i++ Dl ++N++++ ++++ l DfGL+k 
  MMETSP1061-20121228|6183_1 423 YSAEIILAISYVHSLDIIYRDLKPENVLLDgSGHIRLTDFGLSKE 467
                 56677889999******************6378999*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.47
# Mc/sec: 1836.61
//
Query:       MMETSP1061-20121228|6182_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-13   47.8  13.8    1.4e-10   38.7   3.2    2.4  2  TIGR00935 2a45: arsenical pump membrane protein
    1.2e-07   28.6  20.2    0.00014   18.5   2.9    3.7  4  TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family


Domain annotation for each model (and alignments):
>> TIGR00935  2a45: arsenical pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   3.2   6.9e-14   1.4e-10      52     266 ..     188     429 ..     163     434 .. 0.77
   2 !   13.9   1.2   2.3e-06    0.0048     269     423 ..     469     620 ..     465     624 .. 0.75

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 6.9e-14
   TIGR00935  52 ivwealalliaviilslildEt...GfFeyaAvkvyklsngrvrklivllvLlgAvvsallandgaaLlltPvviallevlgl.nkktilafvviagfiadaaslvlivsnlviivsadlfglgFaeytsvmligvilvlvatlllLrllfrkd..........................lpkvyalerlkkk.......kkaikdkallkkclivLvlllvlffvlevleipvsalaaiaaliliilakka 266
                 i +e l ll+++++ ++ l+ +   G+F+ +    + l     +k  + ++L++ + sa + nd+ +L++  vv+ l+   ++ n  + l  +  +++ + a++l + + n++i vs  + ++ + ++++ ml +v  + +    ++++++  +                                 e+           ++    + ++   l v++++++l f     ++ v ++++ a+l++i+  k+ 
  MMETSP1061-20121228|6182_1 188 IILEPLFLLFGLMLTTIYLEKMergGLFDKLR--DS-LDDPVNWKRSAKIMLMSTIGSAAVMNDSVVLIFSGVVVDLCVRHKVaNSLPYLLSLATTANTGSALTLTGNPQNILI-VSLMYDDISWLDFAANMLLPVFTASLINASMMFIYYGAElfpgssgvmenfgimflgnrtpemlaQ------EHAYYArqaategEEVGGTSWTFWSKLQVVIIVVFLIFFACGFDVCVVSITTGAILMVIAAYKRQ 429
                 67788888888888887776433337888653..33.556677888899****************************98877625667888888899**************875.677899***********99999888888899999999999******99999999988885555332......33333222222224444456677777777777777777777888999999999999988877765 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.3e-06
   TIGR00935 269 idtekvlkrveWqivlFslalylvveaLknlglieylgeilnvledkrllaaill..vgfvsAllsslvdniP..tvlvvalslsqssavgllkealvyAlvlGadLGpkitliGslAtllwlhvleqkg.vkisfleyFrvGiiltipvllvtlaaLll 423
                 ++ e+ l +v++ +++ +++ +l++ +  + g+ +    + +     ++   + +   + +  +ls +  n+P   +l  +      +  + l         + a + ++ t++Gs A+++ +  +++ g  +++  ++   Gi+ ti +l +++  L+ 
  MMETSP1061-20121228|6182_1 469 TESETTLTEVDYGLLMLFIGQFLLIGSFDDTGVPQAFFALSMGKCADQMTEGACVywFVTIVTVLSNVASNVPvcQMLAAT--FPYATPYDWL------QVSFSATIAGNLTMLGSAANMIVAFQAAKVGdRTFTSERHAPFGIPSTILSLYAGTFLLAT 620
                 5678899**************************998888766555445554444401455667899999999944344333..3333333333......24589999************999988777762689999**************999988875 PP

>> TIGR00785  dass: transporter, divalent anion:Na+ symporter (DASS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.9   6.9e-08   0.00014     135     220 ..     257     334 ..     227     348 .. 0.68
   2 ?   -1.9   0.2      0.11   2.2e+02     198     349 ..     389     403 ..     371     427 .. 0.51
   3 !   10.7   0.3   1.6e-05     0.034     288     370 ..     467     549 ..     465     555 .. 0.82
   4 !   10.0   0.1   2.7e-05     0.056     157     223 ..     559     626 ..     552     631 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 6.9e-08
   TIGR00785 135 sllallgskeekskrkigkylllgiavsasigsigfligsapNalaasllskilgieisfldWllaa.lPlgiillllvplllyvlf 220
                  +++l+ +++     +   y ll+ a +a++gs+ +l+g + N+l +sl+       is+ld +  + lP++   l+ +  ++++++
  MMETSP1061-20121228|6182_1 257 VVVDLCVRHK---VANSLPY-LLSLATTANTGSALTLTGNPQNILIVSLMY----DDISWLDFAANMlLPVFTASLINA-SMMFIYY 334
                 3333333333...3445566.578999************************....56*******9999**988887654.3444554 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.11
   TIGR00785 198 llaalPlgiillllvplllyvlfkpelkkkeevkllakeeleemgplslrekallvilllalllwifgksegikasvvallavvlllllgivtwkdikknkvaWnvlvlfgglitlagvLkksGfikwlseklvkileglsptivvlllvvl 349
                  +  +                                                                                                                                          i+v++l++ 
  MMETSP1061-20121228|6182_1 389 SKLQVV-----------------------------------------------------------------------------------------------------------------------------------------IIVVFLIFF 403
                 333332.........................................................................................................................................222222222 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 1.6e-05
   TIGR00785 288 ivtwkdikknkvaWnvlvlfgglitlagvLkksGf.ikwlseklvkileglsptivvlllvvlfvlllyefaSntAltallvpi 370
                 +vt+ + +  +v++++l+lf g   l g + ++G+  ++++ ++ k++++    + v  +v ++v +l+++aSn     +l++ 
  MMETSP1061-20121228|6182_1 467 LVTESETTLTEVDYGLLMLFIGQFLLIGSFDDTGVpQAFFALSMGKCADQMTEGACVYWFV-TIVTVLSNVASNVPVCQMLAAT 549
                 68888888889***********************945799999999997777555555555.56678899****9888877765 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 2.7e-05
   TIGR00785 157 lgiavsasigsigfligsapNalaasllskilgieisfldWllaalPlgiillllvplll.yvlfkpe 223
                 l++++sa i++  ++ gsa+N+++a  ++k+   + +    + +++P  i+ l   ++ll    f pe
  MMETSP1061-20121228|6182_1 559 LQVSFSATIAGNLTMLGSAANMIVAFQAAKVGDRTFTSERHAPFGIPSTILSLYAGTFLLaTFHFAPE 626
                 7899**********************99999999999999999****888888765544404455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.45
# Mc/sec: 1871.31
//
Query:       MMETSP1061-20121228|6185_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00029   18.0   0.0    0.00043   17.5   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
  ------ inclusion threshold ------
      0.028   11.8   0.0      0.044   11.1   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.1e-07   0.00043      83     148 ..     116     186 ..      39     199 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.1e-07
   TIGR01934  83 kekeeanvefieadaeeLp.fednsfdav....tiafGlRNvtdiekaLkelaRVlkpggrlvilefskpk 148
                 k++  + v+ + + a +L+  ed+s+d+v    + a    N  d +k ++e+aRVlkpggr++ +e s+ +
  MMETSP1061-20121228|6185_1 116 KSRGASVVSLVDQRADDLKeTEDQSVDVVislqSAAKMNENGLDWKKSVQEAARVLKPGGRFLFVEQSTID 186
                 22234568999999999998999999987433345555679999**********************98765 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.1e-05     0.044      87     154 ..     112     184 ..      98     196 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.1e-05
   TIGR02752  87 kekvkdaklenvelvhgnamelp.yednsfdyvtigfg....lrnvpdylqvlkemarvvkpggkvvcletsq 154
                 k++ k +  + v+lv   a +l   ed+s d v           n  d+ + ++e arv+kpgg+   +e s 
  MMETSP1061-20121228|6185_1 112 KQQEKSRGASVVSLVDQRADDLKeTEDQSVDVVISLQSaakmNENGLDWKKSVQEAARVLKPGGRFLFVEQST 184
                 566677778889999999999862566777766432221111357889******************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1698.64
//
Query:       MMETSP1061-20121228|6188_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 1742.26
//
Query:       MMETSP1061-20121228|6186_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.8e-138  456.5   0.5   9.3e-138  456.3   0.3    1.0  1  TIGR01139 cysK: cysteine synthase A
   8.7e-136  449.9   0.2     1e-135  449.7   0.1    1.0  1  TIGR01136 cysKM: cysteine synthases
    2.8e-98  326.9   0.2    3.3e-98  326.6   0.1    1.1  1  TIGR01138 cysM: cysteine synthase B
    2.5e-93  311.0   0.1      3e-93  310.8   0.1    1.0  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    4.5e-70  233.9   0.0    5.3e-70  233.7   0.0    1.0  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    4.8e-20   69.7   0.4    1.9e-19   67.7   0.3    1.8  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    1.1e-18   64.9   0.2    1.5e-18   64.5   0.1    1.2  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
      3e-16   57.0   0.0    4.7e-15   53.1   0.0    2.1  3  TIGR02079 THD1: threonine dehydratase
    2.8e-11   40.8   2.5    1.1e-10   38.9   1.7    1.7  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    7.3e-09   33.0   0.0    2.1e-06   25.0   0.0    2.1  2  TIGR00260 thrC: threonine synthase
    4.4e-05   20.2   0.3      0.018   11.6   0.0    2.4  3  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
    0.00012   18.8   0.1    0.00095   15.9   0.0    2.0  2  TIGR03844 cysteate_syn: cysteate synthase
    0.00057   16.6   0.0     0.0009   15.9   0.0    1.2  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
    0.00073   16.0   0.0     0.0014   15.0   0.0    1.4  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
     0.0015   15.5   0.3       0.63    6.9   0.0    2.6  3  TIGR00263 trpB: tryptophan synthase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  456.3   0.3  3.4e-140  9.3e-138       2     298 .]      45     342 ..      44     342 .. 0.99

  Alignments for each domain:
  == domain 1    score: 456.3 bits;  conditional E-value: 3.4e-140
   TIGR01139   2 seliGntPlvrLn.laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgk.tiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnkylllkqfenpanpeihrkttapeilkdldgkldafvagvGtGGtitGvgevlkekkpdikvvavePaespvlsggkpgphkiqGigagfiPkvLdkevidevikvsdeeaietarrlakeeGilvGissGaavaaalkvakkle.kdkkivvilpdtgerYlstaLf 298
                  eliG tPlv+L  l e+++ae+++kles+nP++svkdrial+mi++ae++g +k+g+ ++ve+tsGntGi+lamvaa++gy liltmpe+ms+err llka+Ga+lvLt++a+gm gai+kaee++++++  + ll+qf+n  np+ihr+tt+pei+ d+dgk+d++v gvGtGGt+tG g++lk  +p++++vaveP+es+vlsggkpgphkiqGigagfiP + d++++devi++s ++a+e+ar++a++eGi+ GissGa+v aa++vak++e k+k+iv+i+p++gerYlstaLf
  MMETSP1061-20121228|6186_1  45 LELIGGTPLVKLSkLSEGCEAEIVLKLESFNPANSVKDRIALSMITQAEERGDIKPGEtVLVEPTSGNTGIGLAMVAASKGYDLILTMPESMSMERRVLLKAFGAQLVLTPAAKGMGGAIAKAEEIAATQG-GF-LLQQFNNADNPKIHRETTGPEIWADTDGKVDILVGGVGTGGTLTGCGQYLKPLNPSLQIVAVEPTESAVLSGGKPGPHKIQGIGAGFIPGNADTSLLDEVIQISGDDAMEMARNIATQEGIFCGISSGASVLAATQVAKRPEnKGKRIVAIIPSFGERYLSTALF 342
                 589*********999******************************************9689*********************************************************************9.56.9*********************************************************************************************************************************************9*********************9 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.7   0.1  3.8e-138    1e-135       2     299 .]      45     342 ..      44     342 .. 0.99

  Alignments for each domain:
  == domain 1    score: 449.7 bits;  conditional E-value: 3.8e-138
   TIGR01136   2 eeliGntPlvrln.lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgk.tiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGtgGtitGvgrvlkekkpnvkivavePaespvlsegkpgphkiqgigagfiPkildeelldevikvededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerYLstelf 299
                  eliG tPlv+l  lse+++ae+++KlEs+nP++SvKdRialsmi++Ae+rg +k+g+ +++e+tSGNtGi+LAmvaa+kgy lil+mpe+ms+ERr llka+Ga+lvlt+a++gm gai+ka+e+a++++  ++ll+qf+N++Np++Hr+ttgpEi++dtdgk+d++v gvGtgGt+tG g++lk  +p+++ivaveP+es+vls+gkpgphkiqgigagfiP + d++lldevi+++ +da+e+ar++a++egi++GiSsGa v aa +vak++e+++k+iv+i+p++gerYLst+lf
  MMETSP1061-20121228|6186_1  45 LELIGGTPLVKLSkLSEGCEAEIVLKLESFNPANSVKDRIALSMITQAEERGDIKPGEtVLVEPTSGNTGIGLAMVAASKGYDLILTMPESMSMERRVLLKAFGAQLVLTPAAKGMGGAIAKAEEIAATQG--GFLLQQFNNADNPKIHRETTGPEIWADTDGKVDILVGGVGTGGTLTGCGQYLKPLNPSLQIVAVEPTESAVLSGGKPGPHKIQGIGAGFIPGNADTSLLDEVIQISGDDAMEMARNIATQEGIFCGISSGASVLAATQVAKRPENKGKRIVAIIPSFGERYLSTALF 342
                 689*****************************************************985789*****************************************************************9976..789*******************************************************************************************************************************************************************9 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.6   0.1  1.2e-100   3.3e-98       2     290 .]      44     342 ..      43     342 .. 0.95

  Alignments for each domain:
  == domain 1    score: 326.6 bits;  conditional E-value: 1.2e-100
   TIGR01138   2 ilklvGntplvrlkrllpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGd.vlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkeeGmeGardlarelvrkgeeklldqfnnpdnpkahytstGieiwqqtkGrithfvsslGttGtimGvsrflkeqnpavqivGlqpaegsaieG.......lrrieseylpgifdaslvdrvvdveqedaediarelakkegifvGvssGgavaaalrlarelek..avvvaiicdrGdrylstgvf 290
                 +l+l+G tplv+l +l+   ++e+++kle++npa svkdr alsmi++ae rG+ik+G+ vl+e tsGntGi lamvaa kGy ++l mp+ +s er+  lka+Ga+l+l+   +Gm Ga+  a+e++  + + ll+qfnn+dnpk h  +tG+eiw  t+G++  +v ++Gt+Gt++G +++lk  np++qiv ++p+e+  + G       ++ i + + pg  d sl+d+v+++  +da ++ar++a +egif+G+ssG++v aa ++a+  e+    +vaii+  G+rylst++f
  MMETSP1061-20121228|6186_1  44 VLELIGGTPLVKLSKLSEGCEAEIVLKLESFNPANSVKDRIALSMITQAEERGDIKPGEtVLVEPTSGNTGIGLAMVAASKGYDLILTMPESMSMERRVLLKAFGAQLVLTPAAKGMGGAIAKAEEIAATQGGFLLQQFNNADNPKIHRETTGPEIWADTDGKVDILVGGVGTGGTLTGCGQYLKPLNPSLQIVAVEPTESAVLSGgkpgphkIQGIGAGFIPGNADTSLLDEVIQISGDDAMEMARNIATQEGIFCGISSGASVLAATQVAKRPENkgKRIVAIIPSFGERYLSTALF 342
                 6789******************************************************83579*****************************************************************************************************************************************9998773333444555667889***************************************************87776689****************98 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.8   0.1   1.1e-95     3e-93       1     322 [.      40     354 ..      40     378 .. 0.91

  Alignments for each domain:
  == domain 1    score: 310.8 bits;  conditional E-value: 1.1e-95
   TIGR01137   1 iadnildliGntPlvrlnkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdt.liePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeipgavildqyanasnPlahydttgeeileqlegkldalvagvGtGGtitGiarklkekedkvrivGadPeGs.ilaepeelnktektdykveGiGydfiPtvldrkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaalkvaeeelkeddvivvllpdsirnyltkf.lndeWlkdkgfld 322
                 ia+n+l+liG+tPlv+l k+s+g +ae++ k+e fn+  svkdrial+mi +ae+ G +kpg+t l+ePtsGntGiGla+vaa kGy  i+++Pe +s e++ +lka+Ga++v tP+a  +      i+ a+ +   ++g + l q++na+nP+ h +ttg+ei+++++gk+d lv gvGtGGt+tG +++lk  +++++iv ++P  s +l+++      +  ++k++GiG  fiP   d ++ de+i+ + +++++mar+++++eg+++g ssG++v aa +va++  +++++iv+++p  +  yl+   +++ W +  ++  
  MMETSP1061-20121228|6186_1  40 IAENVLELIGGTPLVKLSKLSEGCEAEIVLKLESFNPANSVKDRIALSMITQAEERGDIKPGETvLVEPTSGNTGIGLAMVAASKGYDLILTMPESMSMERRVLLKAFGAQLVLTPAAKGMG---GAIAKAEEIA-ATQGGFLLQQFNNADNPKIHRETTGPEIWADTDGKVDILVGGVGTGGTLTGCGQYLKPLNPSLQIVAVEPTESaVLSGG------KPGPHKIQGIGAGFIPGNADTSLLDEVIQISGDDAMEMARNIATQEGIFCGISSGASVLAATQVAKRPENKGKRIVAIIPSFGERYLSTAlFQNLWDEASNMKA 354
                 5799**********************************************************77479*************************************************987765...4567777765.57999*****************************************************************876377777......55679*********************************************************************************986515666655555443 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.7   0.0   1.9e-72   5.3e-70       2     303 ..      45     346 ..      44     347 .. 0.93

  Alignments for each domain:
  == domain 1    score: 233.7 bits;  conditional E-value: 1.9e-72
   TIGR03945   2 lsligntplvkleklfedekvelfaKlEglnpagSvKdrtAlallekaikegeikpg.ttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaRlarvrellaeipdavwlNQYaneanaeahyettaeeileelk.evdylfvgvsttGtlaGvarrlrekspevkvvavDavGS.vifggepgkRlipGlGasvvpelldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllak.ieegstvvailpDrGerYldt.vYddeW 303
                 l+lig tplvkl+kl e  ++e+ +KlE++npa+SvKdr Al+++++a+++g+ikpg t+++E +SGn +i+Lamv+a++G+++i  +   +s + + ll+a+ga++++      +gg     +a+ +e++a ++  + l Q++n++n++ h ett+ ei ++ + +vd l+ gv+t+Gtl+G+ ++l+  +p++++vav+ + S v+ gg+pg+ +i G+Ga+  p   d+sl+dev+++s  +++ ++r+++++egi+ G SsG+ v a+++++++  ++g+++vai+p  GerYl+t ++++ W
  MMETSP1061-20121228|6186_1  45 LELIGGTPLVKLSKLSEGCEAEIVLKLESFNPANSVKDRIALSMITQAEERGDIKPGeTVLVEPTSGNTGIGLAMVAASKGYDLILTMPESMSMERRVLLKAFGAQLVLTPAAKGMGG----AIAKAEEIAA-TQGGFLLQQFNNADNPKIHRETTGPEIWADTDgKVDILVGGVGTGGTLTGCGQYLKPLNPSLQIVAVEPTESaVLSGGKPGPHKIQGIGAGFIPGNADTSLLDEVIQISGDDAMEMARNIATQEGIFCGISSGASVLAATQVAKRpENKGKRIVAIIPSFGERYLSTaLFQNLW 346
                 6899****************************************************97889*********************************************998888777666....5777777665.5677899************************************************************98776266799*****************************************************************9956667***************984566666 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.3   6.9e-22   1.9e-19       1     280 [.      51     328 ..      51     362 .. 0.74

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 6.9e-22
   TIGR01127   1 tpleksstlsditgaevylklenlqktGsfkirGalnkiaklseeek.krG...vvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLh..GadfDeayklaeelaeeegrvfvhafdDef.viaGqGtlgleiledl.pdvdtvivPvGGGGLisGvasavkklnpevkviGveaeaapslveslkegkikavesvktiaDGiavkkpgdltfeivkelvDevvavdeeeiakaillLlerakivae.gaGavgvaav.leekvdvkgkkvavv 280
                 tpl k s ls+ ++ae+ lkle++  + s k r al  i+++ e +  k G    v  ++Gn   G a+ a   g +  + mPes  +++    k++Ga+ +L    + +  a + aee+a+ +g  +++ f++       + t g ei +d+ ++vd+++  vG GG ++G    +k lnp ++++ ve  ++    + l+ gk+  ++  + i  G     pg+        l Dev++++ ++  +    +  ++ i    ++Ga  +aa  ++++ ++kgk+++ +
  MMETSP1061-20121228|6186_1  51 TPLVKLSKLSEGCEAEIVLKLESFNPANSVKDRIALSMITQAEERGDiKPGetvLVEPTSGNTGIGLAMVAASKGYDLILTMPESMSMERRVLLKAFGAQLVLTpaAKGMGGAIAKAEEIAATQGGFLLQQFNNADnPKIHRETTGPEIWADTdGKVDILVGGVGTGGTLTGCGQYLKPLNPSLQIVAVEPTES----AVLSGGKPGPHKI-QGIGAGFI---PGN----ADTSLLDEVIQISGDDAMEMARNIATQEGIFCGiSSGASVLAATqVAKRPENKGKRIVAI 328
                 89***************************************999765232333257789********************************************822456899********************964313345779999*99886479*********************************96554....3455566655543.34444433...222....223455666666655555444444445554443145666666541333344666665555 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1   5.4e-21   1.5e-18      10     208 ..      43     248 ..      37     320 .. 0.89

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 5.4e-21
   TIGR01124  10 rvyeaavetplekaaklserlknrvllkredlqpvfsfklrGaynkmaqlsaeqkak...G.viaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGe..nydeakakalelaqekgltfiapfddplv.iaGqGtvalellrqveedldavfvpvGGGGliaGvaalvkqllpeikvigveaedsaalk 208
                 +v e    tpl k +klse  + +++lk e  +p +s k r a ++++q  +    k     ++  ++Gn   G+a+ a+  G   ++ mpe+ +  +   +kafG+++vl  +      a aka e+a  +g   ++ f++ +     + t + e+   ++ ++d +   vG GG ++G   ++k l p +++++ve+++sa+l 
  MMETSP1061-20121228|6186_1  43 NVLELIGGTPLVKLSKLSEGCEAEIVLKLESFNPANSVKDRIALSMITQAEERGDIKpgeTvLVEPTSGNTGIGLAMVAASKGYDLILTMPESMSMERRVLLKAFGAQLVLTPAakGMGGAIAKAEEIAATQGGFLLQQFNNADNpKIHRETTGPEIWADTDGKVDILVGGVGTGGTLTGCGQYLKPLNPSLQIVAVEPTESAVLS 248
                 67788889****************************************98875443221142456789*************************99999999**********8651157899************99999998765424578999*************************************************9986 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.0   1.7e-17   4.7e-15       7     210 ..      41     247 ..      36     251 .. 0.89
   2 ?   -0.6   0.0      0.33        92     247     302 ..     272     329 ..     263     337 .. 0.72
   3 ?    0.7   0.0      0.14        37     103     150 ..     326     375 ..     313     378 .. 0.75

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 1.7e-17
   TIGR02079   7 kkrlkevvketPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdeel....ekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavekegktlipPfddkdiie.GqgtvaveileqleeekidlvlvpvGGGGlisGvtsylkekskktkiigvePeGapsl 210
                 ++++ e++  tPl k ++lse  +aei lk e ++   s k r a  +++q  + +     e ++v  ++Gn   G+a      g    + mP      ++  +k fG + + +    +    a a+a++ ++++g  l++ f++ d  +  + t + ei  + +  k+d+++ +vG GG  +G + ylk   +  +i+ veP+ ++ l
  MMETSP1061-20121228|6186_1  41 AENVLELIGGTPLVKLSKLSEGCEAEIVLKLESFNPANSVKDRIALSMITQAEERGDikpgETVLVEPTSGNTGIGLAMVAASKGYDLILTMPESMSMERRVLLKAFGAQLV-LTPAAKGMGGAIAKAEEIAATQGGFLLQQFNNADNPKiHRETTGPEIWADTDG-KVDILVGGVGTGGTLTGCGQYLKPLNPSLQIVAVEPTESAVL 247
                 567889999****************************************9987765322336789999****************************************9987.5566778899********************9877543156799******9877.7***********************************987765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.33
   TIGR02079 247 kvvdevtlveegavcstildlynkegivaePaGalsiaaleels..eeikgktvvcvv 302
                 +++dev++++ +       ++ ++egi    +   s+ a  +++   e kgk +v+++
  MMETSP1061-20121228|6186_1 272 SLLDEVIQISGDDAMEMARNIATQEGIFCGISSGASVLAATQVAkrPENKGKRIVAII 329
                 5678888888888888888999999999876555555544554414566788999998 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.14
   TIGR02079 103 vdkvklfGgefievilvGdtfdeaaaaakkaveke..gktlipPfddkdi 150
                 v  +  fG++++   l  + +dea+    ++ve +  ++t+  P dd++i
  MMETSP1061-20121228|6186_1 326 VAIIPSFGERYLSTALFQNLWDEASNMKAESVEFDswNTTMDAPSDDSTI 375
                 445668******************99888888754125677788888765 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   1.7   3.9e-13   1.1e-10      13     207 ..      44     246 ..      31     333 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 3.9e-13
   TIGR02991  13 iagrveetplveseslsellGvpvllklesrqttGsfklrGatnavlslsdaer.aaG...vvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivG..rsqddaqeeverlvkerGlvmlppfdhadi.vaGqGtlglevveqvpdlalvlv.plsGGGlasGvavavkalkpatrviGvsmerGaa 207
                 +   +  tplv+ + lse +  ++ lkles ++  s k r a   +   ++    + G   +v  ++Gn G +la  a+ +g   ++ m e + +++   ++ +Ga++ +    +    a  + e + + +G  +l  f++ad     + t g e+ ++      +lv  +  GG  +G +  +k l+p+ +++ v     a 
  MMETSP1061-20121228|6186_1  44 VLELIGGTPLVKLSKLSEGCEAEIVLKLESFNPANSVKDRIALSMITQAEERGDiKPGetvLVEPTSGNTGIGLAMVAASKGYDLILTMPESMSMERRVLLKAFGAQLVLTPaaKGMGGAIAKAEEIAATQGGFLLQQFNNADNpKIHRETTGPEIWADTDGKVDILVgGVGTGGTLTGCGQYLKPLNPSLQIVAVEPTESAV 246
                 4445667************************************999987664321222232788899****************************************998751155678999*****************9988624578999*****99987777777257889*******************9997665544 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   7.6e-09   2.1e-06      21     107 ..      49     135 ..      32     152 .. 0.86
   2 !    6.1   0.0    0.0043       1.2     270     313 ..     275     317 ..     237     335 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 7.6e-09
   TIGR00260  21 gstelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne.....tvlcAtsGdtgaaaaealagkanvkvvvLyPkg 107
                 g t+l++  kl+e  +a ++ +k ++ +P  + KDr      +++t+a e+g       +++  tsG+tg  +a + a+ ++ + +  +P+ 
  MMETSP1061-20121228|6186_1  49 GGTPLVKLSKLSEGCEA-EIVLKLESFNPANSVKDRI---ALSMITQAEERGDIkpgetVLVEPTSGNTGIGLA-MVAASKGYDLILTMPES 135
                 6799*************.******************9...78899*****99988999555568**********.*********99999986 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0043
   TIGR00260 270 edlkesvsdeeileaikklaeeegyllephtavavaalkklvek 313
                 +++  ++s ++ +e  +++a +eg+++   ++++v a  + ++ 
  MMETSP1061-20121228|6186_1 275 DEV-IQISGDDAMEMARNIATQEGIFCGISSGASVLAATQVAKR 317
                 445.57899999***********************998766554 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   6.4e-05     0.018      61     178 ..      44     159 ..      30     180 .. 0.80
   2 ?   -3.3   0.1       2.2   6.1e+02     244     261 ..     206     223 ..     201     250 .. 0.67
   3 !    6.2   0.0    0.0029      0.78     349     407 ..     279     337 ..     272     347 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.4e-05
   TIGR01415  61 ayakigrPtPlirakkleellgtkariyyksesvsptGshkintaiaqayyakkeG.v...krlvtetGaGqWGsalslaaalldlkvkvfmvrvsfkqkpyrkllmelygaevipsPselt 178
                 +++ i   tPl++  kl e  g +a i +k es  p+ s k   a++ +  a + G +   +++  e  +G  G  l++ aa  + +  + m ++     + r++l++++ga+ + +P+ + 
  MMETSP1061-20121228|6186_1  44 VLELI-GGTPLVKLSKLSE--GCEAEIVLKLESFNPANSVKDRIALSMITQAEERGdIkpgETVLVEPTSGNTGIGLAMVAASKGYDLILTMPES---MSMERRVLLKAFGAQLVLTPAAKG 159
                 33445.469***9999998..78899***********************99999884233368999999****9999999999999988888765...35689***********99998765 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.2
   TIGR01415 244 kPdvivgcvGGGsnfagl 261
                 k d++vg vG G   +g 
  MMETSP1061-20121228|6186_1 206 KVDILVGGVGTGGTLTGC 223
                 568999999988777665 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0029
   TIGR01415 349 aydqeevfeaavlfakaeGivPaPesahaiavaideakkareegkekvilfslsGhGll 407
                 +++ ++++e+a+ +a +eGi     s  ++ +a++ ak+ +++gk+ v ++   G  +l
  MMETSP1061-20121228|6186_1 279 QISGDDAMEMARNIATQEGIFCGISSGASVLAATQVAKRPENKGKRIVAIIPSFGERYL 337
                 5677899***********************************99888777766666665 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.5e-06   0.00095      98     188 ..      78     175 ..      70     180 .. 0.73
   2 ?    0.4   0.0      0.17        46     166     191 ..     277     300 ..     266     318 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.5e-06
   TIGR03844  98 csfkelealptlqrlkek.....gkkvlvvasaGntgrafaevsaltgkpvvlvvPes.av.drlwttedassvllvtvegdytdaiklaekiaalpG 188
                  s k+  al+ + +++e+     g+ vlv  ++Gntg  +a v+a  g++++l +Pes ++  r+ +    ++++l         ai+ ae+iaa++G
  MMETSP1061-20121228|6186_1  78 NSVKDRIALSMITQAEERgdikpGETVLVEPTSGNTGIGLAMVAASKGYDLILTMPESmSMeRRVLLKAFGAQLVLTPAAKGMGGAIAKAEEIAATQG 175
                 67777777777777777632222456788889************************983341456666555555555555568899******999887 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.17
   TIGR03844 166 lvtvegdytdaiklaekiaalpGlvp 191
                 ++ ++gd  da+++a++ia+++G++ 
  MMETSP1061-20121228|6186_1 277 VIQISGD--DAMEMARNIATQEGIFC 300
                 5677777..89999999999999875 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   3.3e-06    0.0009      92     171 ..     100     181 ..      79     191 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3.3e-06
   TIGR01747  92 lkdatfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitdln..yddavrlankmaqekgwvlvqd 171
                  +++++v  t Gn G G+a  a   G + ++ mp   ++er   ++  Ga+ ++t        a+  a++ a ++g+ l+q+
  MMETSP1061-20121228|6186_1 100 PGETVLVEPTSGNTGIGLAMVAASKGYDLILTMPESMSMERRVLLKAFGAQLVLTPAAkgMGGAIAKAEEIAATQGGFLLQQ 181
                 46789999********************************************999765125677888888888888888886 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.3e-06    0.0014     110     188 ..      99     179 ..      78     187 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.3e-06
   TIGR03528 110 klgditfvtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatitdln..yddavrlaakkaeekGwvvv 188
                 k g+ ++v  t Gn G G+a  a   g   ++ mP   + er+  +++ Ga+ ++t        a+  a++ a ++G  ++
  MMETSP1061-20121228|6186_1  99 KPGETVLVEPTSGNTGIGLAMVAASKGYDLILTMPESMSMERRVLLKAFGAQLVLTPAAkgMGGAIAKAEEIAATQGGFLL 179
                 558999**********************************************99986541134555555666666555555 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0047       1.3      51     130 ..      51     133 ..      39     154 .. 0.87
   2 ?   -1.0   0.0      0.54   1.5e+02     216     259 ..     205     248 ..     198     281 .. 0.64
   3 !    6.9   0.0    0.0023      0.63     320     376 ..     278     335 ..     262     343 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0047
   TIGR00263  51 tpltfaknlskklggakiylkredllhtGahkinnalgqallakrlGk....kriiaetGaGqhGvatataaallglecevymG 130
                 tpl   ++ls+  + a+i lk e ++ + + k   al+ +  a++ G     + ++ e  +G  G+  a++aa  g ++ + m 
  MMETSP1061-20121228|6186_1  51 TPLVKLSKLSEGCE-AEIVLKLESFNPANSVKDRIALSMITQAEERGDikpgETVLVEPTSGNTGIGLAMVAASKGYDLILTMP 133
                 8999999****997.9***************************9999633335699*****************99998877775 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.54
   TIGR00263 216 grlPdaviacvGGGsnaiGifaafie..deeveligveagGkGidt 259
                 g++ d+++  vG G    G+  ++++  ++++++++ve++ + + +
  MMETSP1061-20121228|6186_1 205 GKV-DILVGGVGTGGTLTGC-GQYLKplNPSLQIVAVEPTESAVLS 248
                 544.8999999999877776.56777667889*****998876655 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0023
   TIGR00263 320 eaitdeealealkllskeeGiipalesshalaaleklapklk.kdeivvvnlsGrGdk 376
                  +i+ ++a+e  ++++ +eGi   + s  ++ a++++a++ + k + +v  +   G++
  MMETSP1061-20121228|6186_1 278 IQISGDDAMEMARNIATQEGIFCGISSGASVLAATQVAKRPEnKGKRIVAIIPSFGER 335
                 578999*********************9999999999988774667777666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.25
# Mc/sec: 2117.11
//
Query:       MMETSP1061-20121228|6191_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 409.86
//
Query:       MMETSP1061-20121228|6189_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   15.2   0.0     0.0021   14.1   0.0    1.4  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.2e-07    0.0021     219     266 ..      81     130 ..      53     139 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.2e-07
   TIGR04075 219 hpegrkavflGdlvdrGpdspdvlrlvmsm.vka.gaalcvpGnheekll 266
                 +p + + +flGd++drG++s ++l l  +  vk   +   ++Gnhe+  +
  MMETSP1061-20121228|6189_1  81 QPPNTNYMFLGDYCDRGKQSIEILCLLFAFkVKYpSKIHLLRGNHETAKV 130
                 46667889****************998764366515566789***97433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1509.41
//
Query:       MMETSP1061-20121228|6190_1  [L=2091]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-97  324.0   0.1    7.3e-86  286.7   0.0    3.4  2  TIGR02712 urea_carbox: urea carboxylase
    3.8e-85  284.1   3.6    1.7e-61  205.8   0.1    3.7  4  TIGR01235 pyruv_carbox: pyruvate carboxylase
    7.5e-85  283.2   0.4    6.2e-65  217.6   0.1    3.1  2  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    1.3e-13   48.4   0.0      1e-09   35.6   0.0    3.4  2  TIGR01117 mmdA: methylmalonyl-CoA decarboxylase alpha subunit
    8.2e-11   38.1   0.0    2.2e-10   36.6   0.0    1.6  2  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
    4.6e-06   23.2   0.1    7.6e-06   22.5   0.0    1.3  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.7   0.0   1.1e-88   7.3e-86       2     452 ..      96     606 ..      95     617 .. 0.84
   2 !   26.4   0.0   4.1e-10   2.8e-07    1134    1200 ..     735     800 ..     728     801 .. 0.93

  Alignments for each domain:
  == domain 1    score: 286.7 bits;  conditional E-value: 1.1e-88
   TIGR02712   2 kkvlianrGeiavriirtlkk...lg......irsvavysdad..kasqhvkdadeavalgeataaesylkidkileiakktgaeaiiPGyGflsenaafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllp....................Gt........gllesleealeaaeeigyP..vmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvvalgerdCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaagea....pdldelkve.................kprGaaiearvyaedPakdfqPspGlltevkfPedvrvdtwvekGte..vsaeydPmlakiivhgkdreealeklkkaleetkvaG.ivtnldylksivssevfrkakvstrllekleyeasaievl 452
                 kkvlian G  a++ i  +++   ++      ++ va+ s  d  ++++ ++ ad+ v + +   ++ y ++d i +ia ++g++ ++PG+G  sen ++  +++a+gi f+GPt+  +  lG k  a  la++a vP +p                    Gt        g  +++eea+eaa++igy   +m+k++ GGGG G++ vd++e+l++a+ +v +        + +f+ ++ ++arh+evqi+Gd +G++val+ rdCs qrr qk+ ee P     +++ +++++aa++l++++ y +aGtve++y+++ d+fyfle+n rlqvehpvte + g+++    +++a g +    p++  +  +                   + + i ar+ ae+P + f+P++G l ++kf ++  v ++ + G +  +  + d  +  + ++g++re+a+++l  al+e +v G i t ++yl +++++++f + +  t+ l+ + +e+ ++ v 
  MMETSP1061-20121228|6190_1  96 KKVLIANNGMAATKSIMSMRQwayMElgderaVQFVAMASPEDinANAEFIRLADSYVEVPGGVNRNNYANVDLITKIAVEQGVDGVWPGWGHASENPELPTNLAANGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPwsgsfggpddgplqaelteeGTipdeifakGTTKTVEEAIEAARRIGYDngIMIKASEGGGGKGIRFVDNEEDLKNAYIQVTN----EVVGSPIFVMQLCKNARHLEVQIVGDEHGNAVALNGRDCSTQRRFQKIFEEGPPSIAKPDTFKEMQRAAQRLTQSIGYVGAGTVEYLYNAATDDFYFLELNPRLQVEHPVTEGISGVNMPATQLQVAMGIPlyniPEVRRFYGKdmyevgdkidfmeewykDIDTHVIAARITAENPDEGFKPTSGSLERIKFQSTPSVWGYFSVGPNggIHEFADSQFGHLFAKGANREQARKNLILALKEIEVRGeIRTTVEYLVQLLETDAFIENTIDTAWLDGIIKEK-SVGVE 606
                 79************999988633343223333677888887662267889****************************************************************************************887443332222211111111112222222222234689************5559**************************99964....566789***********************************************8888899***********************************************************99999999875411113322222113444455566777777667899**************************************99865599999*******************************9789*************************9986543.34444 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 4.1e-10
   TIGR02712 1134 aveselagrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
                  ++ ++++g++ + l + g ev++g++ v veamkm + ++a+++Gkv++ +v++G  ++aGd+l+ l
  MMETSP1061-20121228|6190_1  735 EMRTDVTGKVVRYLQDNGGEVKEGEPYVEVEAMKMIMPLKASESGKVTH-TVSPGTVISAGDLLASL 800 
                  56789******************************************98.579**********9987 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0     2e-18   1.4e-15      19     134 ..     124     238 ..      97     260 .. 0.82
   2 !  205.8   0.1   2.5e-64   1.7e-61     127     449 ..     258     595 ..     249     599 .. 0.87
   3 !   23.2   0.0   3.4e-09   2.3e-06    1073    1143 .]     732     801 ..     726     801 .. 0.93
   4 ?   -1.9   0.0      0.13        87     137     168 ..    1817    1850 ..    1804    1858 .. 0.74

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 2e-18
   TIGR01235  19 nelgirtvavyseedklslhrq.kadeaylvGeggqlaPveaylsideiirvakknkvdaihPGyGflsensefadkvekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgt 134
                 +e +++ va+ s ed  +   + +  ++y+   g      + y ++d i ++a +++vd + PG+G  sen+e+  +   +Gi fiGP+a v++ lGdk+aa  la+ a vP +P +
  MMETSP1061-20121228|6190_1 124 DERAVQFVAMASPEDINANAEFiRLADSYVEVPG--GVNRNNYANVDLITKIAVEQGVDGVWPGWGHASENPELPTNLAANGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWS 238
                 4667899999999998776665356677774444..456689************************************************************************965 PP

  == domain 2    score: 205.8 bits;  conditional E-value: 2.5e-64
   TIGR01235 127 gvPvvPgtdgpvetleevldfakaiGyP..vilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedt.kfyfievnpriqvehtvteeitGidivkaqikvaeGaslps.kklg.......lpeqedi........ktkGyaiqcrvttedPakdflPdtGrievyrsaeGfGvrldggnayaGaiispyydsllvkvsasastleeaaakmvralrefrirG.vktnipfleavlenekflegsydtsfid 449
                  +P    ++g ++t+ee+ + a++iGy   +++ka+ GGGG+G+r v +ee++++a+ + ++e         ++v +l ++++h+evq++gd++Gn v l  rdcs qrr qk+ e  P     ++  +++  aa +l+++++y +aGtve+l ++ t +fyf+e+npr+qveh vte i+G+++ ++q++va G  l + +++        ++  ++i         +  + i +r+t+e+P++ f+P  G +e  +  +   v    +   +G  i  + ds +  + a++++ e+a+++++ al+e  +rG ++t + +l ++le + f+e++ dt ++d
  MMETSP1061-20121228|6190_1 258 TIPDEIFAKGTTKTVEEAIEAARRIGYDngIMIKASEGGGGKGIRFVDNEEDLKNAYIQVTNEVVG----SPIFVMQLCKNARHLEVQIVGDEHGNAVALNGRDCSTQRRFQKIFEEGPPSIAKPDTFKEMQRAAQRLTQSIGYVGAGTVEYLYNAATdDFYFLELNPRLQVEHPVTEGISGVNMPATQLQVAMGIPLYNiPEVRrfygkdmYEVGDKIdfmeewykDIDTHVIAARITAENPDEGFKPTSGSLERIKFQSTPSVWGYFSVGPNGG-IHEFADSQFGHLFAKGANREQARKNLILALKEIEVRGeIRTTVEYLVQLLETDAFIENTIDTAWLD 595
                 555555578999***************555*******************************99764....579*********************************************************************************998879***********************************98853233331101111222233321111111356799**********************988888888887777777787.589*********************************999************************998 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 3.4e-09
   TIGR01235 1073 nkahvgapmpGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllvle 1143
                  +++++ + ++G v++ + ++G +v++G++ v +eamkm + ++a ++G+v + +v+ G+ i a dll+ le
  MMETSP1061-20121228|6190_1  732 DPSEMRTDVTGKVVRYLQDNGGEVKEGEPYVEVEAMKMIMPLKASESGKVTH-TVSPGTVISAGDLLASLE 801 
                  677888899*****************************************87.79************9886 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 0.13
   TIGR01235  137 pvetleevldfakaiGyPvilkaayGG...GGrGm 168 
                    +t ++++df k+ G+Pv++ a + G   G r m
  MMETSP1061-20121228|6190_1 1817 SYKTAQAINDF-KKEGLPVMIFANWRGfsgGSRDM 1850
                  55667777777.678********986511155555 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0     1e-19   6.9e-17       2     135 ..      95     239 ..      94     260 .. 0.87
   2 !  217.6   0.1     9e-68   6.2e-65     134     444 ..     265     597 ..     247     602 .. 0.88

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 1e-19
   TIGR00514   2 ldkilianrGeialrilrack.....elG....iktvavystad..kdalhvkladeavciGeaasaksylnipniiaaaeitgadaihpGyGflsenadfaelveesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsd 135
                 ++k+lian G  a + + + +     elG    ++ va+ s  d   +a  ++lad  v +     ++ y n+  i  +a  +g+d + pG+G  sen ++    +  g++fiGp+a +++++Gdk +a+ +++ a+vp +p s 
  MMETSP1061-20121228|6190_1  95 IKKVLIANNGMAATKSIMSMRqwaymELGderaVQFVAMASPEDinANAEFIRLADSYVEVPGGVNRNNYANVDLITKIAVEQGVDGVWPGWGHASENPELPTNLAANGIKFIGPTAPVMSVLGDKIAANILAQTAKVPSIPWSG 239
                 69*********9998775443222226765555788999997552167889*******************************************************************************************764 PP

  == domain 2    score: 217.6 bits;  conditional E-value: 9e-68
   TIGR00514 134 sdGlvedveeaveiakeiGyp..viikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkege.fyflemntriqvehpvtemvtgvdlikeqirvakGekl.......slkq.......edv........klkGhaiecrinaedpsknflpspGriksylppgGlgvrvdsavysgyavppyydsliaklivygktreeaiarmkralkeliieG.ikttidfhkliledekfkkgevdikylekk 444
                 ++G +++veea+e a++iGy   ++ika+ GGGG+G+r v +e++l ++  +  +e       + +++ +  +n rh+e+q+++d++Gn+v l  rdcs qrr qk+ ee p  + +++  k++  aa ++++sigy+gaGtve+l++   + fyfle+n r+qvehpvte + gv++   q++va+G +l       ++         +++         +  h+i  ri ae+p++ f+p+ G +++ +  + ++v     v ++  +  + ds  + l ++g +re+a + +  alke+ + G i+tt+++  ++le++ f +  +d+++l+  
  MMETSP1061-20121228|6190_1 265 AKGTTKTVEEAIEAARRIGYDngIMIKASEGGGGKGIRFVDNEEDLKNAYIQVTNEVV----GSPIFVMQLCKNARHLEVQIVGDEHGNAVALNGRDCSTQRRFQKIFEEGPPSIAKPDTFKEMQRAAQRLTQSIGYVGAGTVEYLYNAATDdFYFLELNPRLQVEHPVTEGISGVNMPATQLQVAMGIPLynipevrRFYGkdmyevgDKIdfmeewykDIDTHVIAARITAENPDEGFKPTSGSLERIKFQSTPSVWGYFSVGPNGGIHEFADSQFGHLFAKGANREQARKNLILALKEIEVRGeIRTTVEYLVQLLETDAFIENTIDTAWLDGI 597
                 67999***************555*************************9999888865....4579999******************************************************************************986544***********************************987433333322221111111334222222223568********************************************************************************9889************************99865 PP

>> TIGR01117  mmdA: methylmalonyl-CoA decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0026       1.8      80     144 ..    1479    1542 ..    1476    1550 .. 0.90
   2 !   35.6   0.0   1.5e-12     1e-09     126     440 ..    1586    1924 ..    1578    1939 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0026
   TIGR01117   80 dgrlvyvfaqdftveggslgemhaakivkildlalklgapvvglndsggariqeavdalkgygdi 144 
                  +gr ++  a+d tv+ gs+g        ++ + a +  +p + +    gari   vd lk   +i
  MMETSP1061-20121228|6190_1 1479 EGREIVLIANDVTVQSGSFGVDEDNFFFEASKYAREHQIPRLYISCNAGARIG-LVDELKSKINI 1542
                  79**************************************************6.58888876665 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 1.5e-12
   TIGR01117  126 sggariqeavdalkgygdifyrntiasgvvpqisvilgpcaggavyspaltdfilmvdntsqmfitgpqviktvtgeev..taedlggamahasksgvahliaeddedvialirkllsylpsnnmedapevkteddpvrktpelddllpddpnkaydvkdvitaivdngeylelqpyyaknivvgfaridgksvgivanqpkvl....................ag.vldidssdkiarfvrfcdafnipivtfvdvpgylpgvdqeyggiirhgakvlyayseatvpkvtiil..rkayggaylamgskdlgad..vvyayptaeiavmgpegaaniifrk 440 
                    g+    +v+ l+g g+i  + + a   +  +s + g   g   y   l++ ++ +++   +++tg   +  + g +v  +  +lgg ++  +  gv+h i +dd++ +a + + ls++p n    +    ++d   rk +   +  p dp+             d g + e+   + k +vvg +r+ g + g +a + +++                    ag vl  dss k+a+ +       +p++ f +  g+  g  +  g i++ ga ++ a  e   p+   +       gg+++ +    +  d   +ya p +   ++ p+g ++i fr 
  MMETSP1061-20121228|6190_1 1586 IIGTNHGIGVENLQGSGKIAGETSAAYDEIFTLSYVTGRSVGIGAYLVRLGQRVIQMKQG-PIILTGFSALNKLLGRNVynSQDQLGGPQIM-HPNGVSHEIVDDDQQGVASMLNWLSHVPKNVGALPAARACGDSVDRKVEWRPTPTPYDPRLMMAGDGNELGFFDKGSFKEYLAGWGKSVVVGRGRLGGIPFGAIAVETRQVeqvvpadpadpnsreailpqAGqVLYPDSSYKTAQAINDFKKEGLPVMIFANWRGFSGGSRDMAGEILKFGAMIVDALREYEHPVYMYLPphGELRGGSWVVVDP-TINEDkmEMYADPDSRGGILEPAGISEIKFRN 1924
                  556666679*******************************************99988876.5679************99445678***9875.4679*************************9999999999**********999*******9998888888999********************************9877665111111111111111111222224555677777777777777779***************999999************999999877765114568999987754.44444115799999999999999999999996 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   3.3e-13   2.2e-10     689     872 ..     268     454 ..     258     474 .. 0.85
   2 ?   -3.4   0.0      0.39   2.7e+02      58      94 ..     669     705 ..     668     711 .. 0.89

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 3.3e-13
   TIGR01369 689 eatsveeakeiakeigyP..vlvRpsyvlgGrameiveneeeleryleeavevskekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniqfvvkd..eevyviEvnvRasRtvPfvskalgvplvklavkvllgkkleel 872
                 + ++veea e+a++igy   +++++s   gG++++ v+nee+l++   ++++    +P+ + +  ++a  ++v +v d++  ++a       ++       +   pp+  + ++ k+++++++++++++ ++G   + ++++   ++ y +E+n+R     P+   + gv++ ++  +v +g  l + 
  MMETSP1061-20121228|6190_1 268 TTKTVEEAIEAARRIGYDngIMIKASEGGGGKGIRFVDNEEDLKNAYIQVTNEVVGSPIFVMQLCKNARHLEVQIVGDEHGNAVALNGRDC-STQRRFQKIFEEGPPSIAKPDTFKEMQRAAQRLTQSIGYVGAGTVEYLYNAatDDFYFLELNPRLQVEHPVTEGISGVNMPATQLQVAMGIPLYNI 454
                 6789*************5559***********************99999999999*********************987654443322222.23333445556678888899**************************999876699********************************999887765 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.39
   TIGR01369  58 eladkvYiePltveavekiiekErpDailltlGGqta 94 
                 +l++ +Y + +  ++ve  + + +  a+++t+GG t 
  MMETSP1061-20121228|6190_1 669 RLSNDIYRLTVAGNTVEARVTETKEGALIATFGGETH 705
                 68899*****************************996 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.1e-08   7.6e-06     517     582 .]     733     797 ..     715     797 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.1e-08
   TIGR01108 517 stdvtaplaGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgevl 582
                  +++ + ++G++v+   ++G evkeGe  + +eamkm + +ka+++G v+  +v  G ++++g+ l
  MMETSP1061-20121228|6190_1 733 PSEMRTDVTGKVVRYLQDNGGEVKEGEPYVEVEAMKMIMPLKASESGKVT-HTVSPGTVISAGDLL 797
                 5678889******************************************9.7999*****999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2091 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 1.08u 0.24s 00:00:01.32 Elapsed: 00:00:00.88
# Mc/sec: 3136.24
//
Query:       MMETSP1061-20121228|6194_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   16.5   1.1     0.0043   15.2   0.8    1.6  1  TIGR03655 anti_R_Lar: restriction alleviation protein, Lar family


Domain annotation for each model (and alignments):
>> TIGR03655  anti_R_Lar: restriction alleviation protein, Lar family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.8     1e-06    0.0043       3      44 ..     181     225 ..     180     230 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1e-06
   TIGR03655   3 pCPFCGgadvslre...geddldeveivaveCktCgasgpveese 44 
                 +CP CG  ++++++   g + +d+ + +++ C +Cga  +++e++
  MMETSP1061-20121228|6194_1 181 ECPNCGAPAQVMKNqdsGSNVVDDFGPAQSICFNCGAILQANEDN 225
                 7*********777788888999999999**********9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 1681.43
//
Query:       MMETSP1061-20121228|6192_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 2031.48
//
Query:       MMETSP1061-20121228|6193_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.25s 00:00:00.76 Elapsed: 00:00:00.34
# Mc/sec: 2861.06
//
Query:       MMETSP1061-20121228|6195_1  [L=1021]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-09   35.6   0.7    7.3e-08   29.7   0.1    2.2  2  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase
    1.4e-08   32.0   0.3    5.2e-06   23.6   0.0    2.4  2  TIGR02092 glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit
    5.4e-06   24.0   2.5      1e-05   23.1   1.7    1.4  1  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    3.5e-05   20.7   0.0     0.0023   14.7   0.1    2.3  2  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
    4.9e-05   20.9   5.9    0.00025   18.6   3.6    2.3  1  TIGR02287 PaaY: phenylacetic acid degradation protein PaaY
    0.00023   18.0   0.4      0.039   10.6   0.3    2.8  3  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    0.00035   17.4   0.2      0.013   12.2   0.2    2.5  3  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0006   16.7   3.1      0.015   12.1   0.3    2.2  2  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
  ------ inclusion threshold ------
      0.012   12.9   0.0      0.033   11.5   0.0    1.7  1  TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase
       0.27    8.7   4.7        1.2    6.5   3.1    1.8  1  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.011       4.5     102     155 ..     148     201 ..     139     208 .. 0.85
   2 !   29.7   0.1   1.8e-10   7.3e-08     271     362 ..     494     585 ..     480     587 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.011
   TIGR02091 102 yqnlelleeveveyvlilsgDhiYkmdyekllkkhiekkadvtvaalevprkeA 155
                 y+  ++  +++++ +l++sgD +  +d+++ ++ h++++ +   a++ v  k A
  MMETSP1061-20121228|6195_1 148 YKRNWIRASKQAKPFLLVSGDVVADLDLTAAMDAHKARNQHDSAAVMTVVLKPA 201
                 55556666789999***********************99999999999887766 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.8e-10
   TIGR02091 271 kkwpiytkeeqlppakfveskeakvkdslvaegcvisgatvenSvlgervriesesevedsvvlgevkigenakikkaiidknvrigegvki 362
                 ++ + y ++e l+p+k+ + +  +    + + g+v +g+ +e+ vlge+v++e+++++ d+ +++ v ig++a+++ +++ +n+ + +++++
  MMETSP1061-20121228|6195_1 494 HHGNHYQYKEILHPTKVGRTSVVHGPGMMGSRGTVGEGCLLERCVLGESVVVETGAQLIDCHLMDGVVIGAGAQLRSCVVAQNAIVRKNAVV 585
                 566779999999****9999755555566688999999************************************************999876 PP

>> TIGR02092  glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0035       1.4     106     168 ..     149     217 ..     124     234 .. 0.68
   2 !   23.6   0.0   1.3e-08   5.2e-06     279     354 ..     507     585 ..     501     589 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0035
   TIGR02092 106 nleflkrsksey.vvvlnskvvinidlkavlkrHeetkkd.....itvvykkvkkaeaseedtilelde 168
                 ++++++ sk+ +  ++++ +vv ++dl+a++  H+++++      +tvv k  + + +++ ++  + ++
  MMETSP1061-20121228|6195_1 149 KRNWIRASKQAKpFLLVSGDVVADLDLTAAMDAHKARNQHdsaavMTVVLKPANTKTNTTSSSGSRCTA 217
                 56788888876625677889***************9876433333566666666555555555555555 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 1.3e-08
   TIGR02092 279 PtkyaetsevenS..lvanGciieGk.vensilsRgvlvekdaliknsiilqeteigegaklekviiDKdvvieenekl 354
                 Ptk  +ts v+    + + G++ eG  +e ++l  +v+ve +a++ ++ ++  ++ig+ga+l + ++ +++++++n ++
  MMETSP1061-20121228|6195_1 507 PTKVGRTSVVHGPgmMGSRGTVGEGClLERCVLGESVVVETGAQLIDCHLMDGVVIGAGAQLRSCVVAQNAIVRKNAVV 585
                 666666666664311335678888863689********************************************99876 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   1.7   2.5e-08     1e-05      82     181 ..     497     598 ..     444     603 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.5e-08
   TIGR03570  82 kglrfatlihpsaivsksasiGeGvv.....imagavinadvrigdnviintgavveHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvG 181
                 +++++  + hp+ +   s+  G G++     + +g+ +  ++ +g+ v++ tga    dc++ d v i +ga l   +++ +++++  +A+v +g+ +g+++v+G
  MMETSP1061-20121228|6195_1 497 NHYQYKEILHPTKVGRTSVVHGPGMMgsrgtVGEGC-LLERCVLGESVVVETGAQL-IDCHLMDGVVIGAGAQLR-SCVVAQNAIVRKNAVVEPGCFVGEDCVIG 598
                 467889999999999999999999873333244444.455689***********98.7****************7.577999**********************9 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0     0.015         6      19      54 ..      51      86 ..      42     102 .. 0.89
   2 !   14.7   0.1   5.6e-06    0.0023     262     335 ..     509     583 ..     497     603 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.015
   TIGR01208 19 trakqlipvankPilqyaiedlveagikdigivvse 54
                t ak l ++ n P++ y ++ l++ g++++  v++ 
  MMETSP1061-20121228|6195_1 51 TSAKLLCKLNNLPLVDYVVDFLASNGVEQVIFVLGA 86
                67999*************************999987 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 5.6e-06
   TIGR01208 262 ki.vnsvirGPaviGedviiensyigpytsigegvvikd.aeveksivldesviegvekriedsviGkkvkikknr 335
                 k+   sv++GP ++G   ++ +  + +   +ge vv++  a++ ++ ++d++vi +  +++ ++v+ +++ ++kn 
  MMETSP1061-20121228|6195_1 509 KVgRTSVVHGPGMMGSRGTVGEGCLLERCVLGESVVVETgAQLIDCHLMDGVVIGA-GAQLRSCVVAQNAIVRKNA 583
                 554578999**999888888776666666677777776526788889999988755.559************9986 PP

>> TIGR02287  PaaY: phenylacetic acid degradation protein PaaY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   3.6   6.2e-07   0.00025      20     115 ..     513     599 ..     500     611 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 6.2e-07
   TIGR02287  20 savligdvivgkrvyvgplasl.rgdfgr.ivlkeganvqdtcvmhgfpgqdtvveenghvghgailhgcrvgrnalvgmnavvmdgavigessivaa 115
                 ++v+ g  ++g+r  vg    l r  +g+ +v++ ga++ d+ +m g             +g ga l +c v +na+v  navv  g  +ge+++++ 
  MMETSP1061-20121228|6195_1 513 TSVVHGPGMMGSRGTVGEGCLLeRCVLGEsVVVETGAQLIDCHLMDGV-----------VIGAGAQLRSCVVAQNAIVRKNAVVEPGCFVGEDCVIGE 599
                 455556666666666666555535556642566777777777777653...........49**********************************986 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.016       6.6      20      57 ..      51      88 ..      45     186 .. 0.78
   2 ?    0.4   0.0      0.13        52     255     310 ..     508     562 ..     502     564 .. 0.81
   3 !   10.6   0.3   9.6e-05     0.039     244     293 ..     555     603 ..     546     612 .. 0.64

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.016
   TIGR03992 20 trpKvllpvagkpllehliealkeagieelvlvvgyek 57
                t +K l ++ + pl++++++ l++ g+e++++v+g   
  MMETSP1061-20121228|6195_1 51 TSAKLLCKLNNLPLVDYVVDFLASNGVEQVIFVLGACC 88
                6789999**************************97544 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.13
   TIGR03992 255 avvrsgayieGpvligknaeiGPnayiRpatvigedvkvgnaveiKnsiimeetki 310
                 ++v   ++++Gp ++g+  ++G  + +    v+ge+v v + +++ +  +m++  i
  MMETSP1061-20121228|6195_1 508 TKVGRTSVVHGPGMMGSRGTVGEGCLLE-RCVLGESVVVETGAQLIDCHLMDGVVI 562
                 67888999**************999874.678899998888888888888877655 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 9.6e-05
   TIGR03992 244 klkgevvveegavvrsgayieGpvligknaeiGPnayiRpatvigedvkv 293
                 +l   vv++ ga++rs + +   ++++kna++ P +++    vige+v +
  MMETSP1061-20121228|6195_1 555 HLMDGVVIGAGAQLRSCV-VAQNAIVRKNAVVEPGCFVGEDCVIGEEVVL 603
                 566667777777777644.4445666777777777777777777666654 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       0.1        42      16      53 ..      50      87 ..      49     138 .. 0.85
   2 !   11.5   0.1   5.2e-05     0.021     271     334 ..     510     573 ..     502     579 .. 0.86
   3 !   12.2   0.2   3.2e-05     0.013     263     324 ..     537     598 ..     531     613 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.1
   TIGR01173 16 SklpKvLhelagkpmlehvieaarklsaekivvvlghg 53
                S   K L +l + p++ +v++  ++   e+++ vlg  
  MMETSP1061-20121228|6195_1 50 STSAKLLCKLNNLPLVDYVVDFLASNGVEQVIFVLGAC 87
                67789*****************************9965 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 5.2e-05
   TIGR01173 271 iepnvilegkvkigedvviGagsvikdsaikenakikaysvlekseigegasvGPfarlRpesv 334
                 +    +++g   +g++ ++G+g+ ++ ++++e++++++ ++l ++++ +g+ +G  a+lR+  v
  MMETSP1061-20121228|6195_1 510 VGRTSVVHGPGMMGSRGTVGEGCLLERCVLGESVVVETGAQLIDCHLMDGVVIGAGAQLRSCVV 573
                 55667788888999**********************************************7544 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 3.2e-05
   TIGR01173 263 veigqdvviepnvilegkvkigedvviGagsvikdsaikenakikaysvle.kseigegasvG 324
                   +g+ vv+e++++l    ++ ++vviGag++++ +++++na +++++v+e ++ +ge++ +G
  MMETSP1061-20121228|6195_1 537 CVLGESVVVETGAQLIDC-HLMDGVVIGAGAQLRSCVVAQNAIVRKNAVVEpGCFVGEDCVIG 598
                 567889999999999876.99999*******************99999998457788999888 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.3    0.0025         1      97     175 ..     482     564 ..     443     568 .. 0.70
   2 !   12.1   0.3   3.6e-05     0.015     117     150 ..     571     604 ..     553     614 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0025
   TIGR01853  97 ptavveesakleeeveigpnvviganveiGenvkIgpgvvigddvkigdesviyanvviyeevklgk.....nviiqagaviGs 175
                 +t +++ + +++++ +  ++  i + +++G+ +++    ++g+  ++g+++ +  ++v+ e+v ++       +++  g+viG+
  MMETSP1061-20121228|6195_1 482 STSASSTTSAISHHGNHYQYKEILHPTKVGRTSVVHGPGMMGSRGTVGEGCLL-ERCVLGESVVVETgaqliDCHLMDGVVIGA 564
                 33344444457777777788888999999999999888888888888888754.455555555554322222588888999886 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.6e-05
   TIGR01853 117 vviganveiGenvkIgpgvvigddvkigdesviy 150
                  v+ +n+ + +n ++ pg+++g+d++ig+e+v+ 
  MMETSP1061-20121228|6195_1 571 CVVAQNAIVRKNAVVEPGCFVGEDCVIGEEVVLP 604
                 3455666666666666666666666666666654 PP

>> TIGR02623  G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     8e-05     0.033     113     157 ..     153     200 ..     131     210 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8e-05
   TIGR02623 113 vreyledeafcltygdgvadidikaliafhkk...egkkatltavqpp 157
                 +r   + + f+l  gd vad+d++a+++ hk+   ++  a +t v  p
  MMETSP1061-20121228|6195_1 153 IRASKQAKPFLLVSGDVVADLDLTAAMDAHKArnqHDSAAVMTVVLKP 200
                 555556789*********************962224566778877766 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.1    0.0029       1.2     119     196 ..     510     594 ..     504     608 .. 0.55

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0029
   TIGR03532 119 iGegtmidmnavlGgraivGknvhiGaGavlaGvieppsak..pvvieddvliGana.....vileGvkvGkGavvaaGaivied 196
                 +G  +++    ++G+r++vG  + +    +   v+  + a+   +++ d v+iGa a     v+ +   v k avv  G+ v ed
  MMETSP1061-20121228|6195_1 510 VGRTSVVHGPGMMGSRGTVGEGCLLERCVLGESVVVETGAQliDCHLMDGVVIGAGAqlrscVVAQNAIVRKNAVVEPGCFVGED 594
                 6666677777777777777777777655444444444444412456677777777662222233333344455555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.49u 0.24s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 2929.58
//
Query:       MMETSP1061-20121228|6197_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 1261.23
//
Query:       MMETSP1061-20121228|6199_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 503.96
//
Query:       MMETSP1061-20121228|6200_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2418.23
//
Query:       MMETSP1061-20121228|6196_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 3105.87
//
Query:       MMETSP1061-20121228|6198_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2476.12
//
Query:       MMETSP1061-20121228|6204_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.22
# Mc/sec: 1289.89
//
Query:       MMETSP1061-20121228|6202_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-71  239.6   0.0      1e-57  193.7   0.0    2.2  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    1.6e-21   74.4   0.0    1.3e-16   58.2   0.0    2.1  2  TIGR01373 soxB: sarcosine oxidase, beta subunit family
    1.3e-17   61.8   0.0    2.1e-13   47.9   0.0    2.9  3  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    5.6e-13   46.5   0.0    6.5e-05   20.0   0.0    3.2  3  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    4.6e-11   40.0   0.0    1.4e-05   21.9   0.0    2.9  3  TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase
    1.1e-09   35.2   0.0    2.1e-09   34.3   0.0    1.3  1  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
    6.8e-05   19.7   0.6    0.00013   18.7   0.1    1.6  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    0.00012   18.7   0.0    0.00082   16.0   0.0    2.0  2  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00014   18.6   0.3    0.00029   17.6   0.0    1.6  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    0.00015   19.0   0.2     0.0011   16.2   0.0    2.0  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    0.00023   17.7   0.0    0.00035   17.1   0.0    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
     0.0009   16.3   0.0     0.0014   15.6   0.0    1.2  1  TIGR01789 lycopene_cycl: lycopene cyclase
     0.0015   15.1   0.1      0.007   12.9   0.0    1.9  2  TIGR00551 nadB: L-aspartate oxidase
     0.0045   13.7   0.0      0.035   10.7   0.0    2.0  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
     0.0065   14.0   0.0      0.015   12.8   0.0    1.7  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
      0.007   13.0   0.0       0.39    7.2   0.0    2.7  3  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
     0.0071   13.4   0.0       0.12    9.3   0.0    2.1  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
  ------ inclusion threshold ------
      0.011   12.4   0.0       0.02   11.5   0.0    1.4  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.012   12.7   0.0      0.024   11.7   0.0    1.5  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.014   12.4   0.0      0.022   11.7   0.0    1.3  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.022   11.2   0.0       0.19    8.1   0.0    2.0  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
      0.026   11.3   0.0      0.047   10.5   0.0    1.3  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
       0.03   10.8   0.0      0.044   10.3   0.0    1.2  1  TIGR02734 crtI_fam: phytoene desaturase
      0.031   10.5   0.3      0.083    9.1   0.1    1.7  2  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.043   10.2   0.2      0.099    9.0   0.0    1.6  2  TIGR01176 fum_red_Fp: fumarate reductase, flavoprotein subunit
      0.058   10.1   0.0       0.14    8.8   0.0    1.6  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6


Domain annotation for each model (and alignments):
>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   2.2e-14   3.4e-12       1      99 [.      57     161 ..      57     174 .. 0.76
   2 !  193.7   0.0   6.5e-60     1e-57     109     350 ..     200     444 ..     172     445 .. 0.89

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 2.2e-14
   TIGR02352   1 vlviGgGviGlsvAveLakr..ghkvtllekd.e.......vgsgAskaAaGmLapvaEveiaeeallrLaleSlrlypelleelkeltgldveykeeGilvvaadedd 99 
                 v+++GgG+ Gls+A++L +     ++t+l+k+ +       +g+ As aAaGmLap +E    +++  +L+++S+r+y ++++ ++   g+  e   eG+  ++ ++dd
  MMETSP1061-20121228|6202_1  57 VVIVGGGLAGLSTALYLTQIdpERRITILDKNeDsngkapsAGNMASMAAAGMLAPNSERL-PRGEYRDLCMASRRMYADFTALVE---GMAQESGSEGLPYLPNKDDD 161
                 79***************98622689****99844333333346679**************7.9*******************8884...44444444565555555555 PP

  == domain 2    score: 193.7 bits;  conditional E-value: 6.5e-60
   TIGR02352 109 lqsktg.leleslskealrelePelseeirgavflpedaqvdprellkaLvkaleklGvei....ieevevqeieargekvtavktsse.kvqadqvvlaaGawakellplalrpvkgeilrlevpaekllnrpvravvyqrqvYivPredgrlvvGAtseesgfdttvtlegvkeLledaievlPalkeaelletwaGlRPatpDnlPllgeheederlliatGhyRnGiLLaPataevvadliekk 350
                  + +++  +  +l++ ++releP+l +++ g++++peda vd+r+l+  L +a+  +Gve+    ++ev+  +++    k + +  +s+  v a  v +a+Gaw ++llp +l p kg+ l l++p  k +   +++v+++ + YivP++dgr+v+GAt e   fd+ vt+ g++++l+ a e++P+l++++++etwaGlRP tpD  P+lge++ d+ l +a G++RnG+LLaP t++++a li ++
  MMETSP1061-20121228|6202_1 200 EDDEKKtPSAFWLDATQARELEPHLHPDVVGGWWFPEDASVDARRLTCSLKAACVGAGVEFlcgpRNEVTALDLQDGTCKGIWLGSESGrYVVAKAVLVANGAWMRNLLPVPLEPHKGQSLSLRMP--KDRPPILKRVLFGGDSYIVPKADGRIVIGATVEAGSFDSSVTPAGIMHVLSYALELVPGLADLPIEETWAGLRPTTPDKGPILGETPWDN-LFLAGGYWRNGVLLAPKTGHLLATLIANQ 444
                 44444436778*************************************************94444577888888888888899999999567899999****************************..7888899**********************************************************************************9.**************************987 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.3e-05    0.0036      29      65 ..      53      89 ..      44     116 .. 0.85
   2 !   58.2   0.0   8.5e-19   1.3e-16     204     389 ..     266     448 ..     226     465 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.3e-05
   TIGR01373 29 peydviivGgGGhGlatayylakehGitnvavlekgw 65
                 + dv+ivGgG  Gl+ta yl++     ++++l+k+ 
  MMETSP1061-20121228|6202_1 53 LHKDVVIVGGGLAGLSTALYLTQIDPERRITILDKNE 89
                578********************99999999999985 PP

  == domain 2    score: 58.2 bits;  conditional E-value: 8.5e-19
   TIGR01373 204 cevtglikredgrviGv..etsrGfigakkvgvavaGnsskvaelaGlrlplesyvlqalvseplk...piidtvvlsnavhvyvsqsdkGelviGagidgynsyaqrGnlpileevleailelfpilsrvrllrswgGivdvspdaspiiaktpldnlylncGwgtGGfkatpasGtvfaallakdephd 389
                  evt l  + dg++ G+   ++ G   ++k  +++ G    + +l  l +ple +  q+l     k   pi++ v+ ++ ++ y+     G +viGa ++   s+    + + + +vl+  lel+p l+ + +  +w+G+  ++pd+ pi+++tp dnl+l  G+   G    p +G+++a+l+a++++++
  MMETSP1061-20121228|6202_1 266 NEVTALDLQ-DGTCKGIwlGSESGRYVVAKAVLVANGA--WMRNL--LPVPLEPHKGQSLSLRMPKdrpPILKRVL-FG-GDSYIVPKADGRIVIGATVEA-GSFDSSVTPAGIMHVLSYALELVPGLADLPIEETWAGLRPTTPDKGPILGETPWDNLFLAGGYWRNGVLLAPKTGHLLATLIANQKNNN 448
                 577776666.6777776222344544444444444443..33333..56899999998876544333326666655.54.5788888889*******9975.6888888889999**********************************************************************988765 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00041     0.065       1      37 [.      56      94 ..      56     119 .. 0.72
   2 !   47.9   0.0   1.3e-15   2.1e-13     115     317 ..     208     412 ..     199     419 .. 0.83
   3 ?    0.0   0.0      0.47        75     345     375 ..     414     444 ..     412     446 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00041
   TIGR03197  1 kvavIGaGiAgaalalsLar..rGvqvtllekdeklaqg 37
                +v+++G+G+Ag+++al L++   + ++t+l+k+e+   +
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLTQidPERRITILDKNEDSNGK 94
                589***************972246789999987654333 PP

  == domain 2    score: 47.9 bits;  conditional E-value: 1.3e-15
   TIGR03197 115 llravdaeeaselagiel..pkgglffpqggwlsPpelv...kallakakielklhfnteitslerdaeg....WqllsengevlaasvvVlAngaqakqleqtaelplrkvrGQvshlpa.teklsklktvlc.aegYltpakqgehclGAsyerndedlelreadhaenlerlaellpalawaaevdisalqgrvgvRaasrDhLPlvGavp 317
                  + ++da +a el         gg++fp+ + ++ ++l+   ka++  a++e+ +  ++e+t+l+ ++      W l se+g+++ a++v +Anga +++l +   +pl++ +GQ  +l   ++  + lk vl  +++Y++p+++g+ ++GA+ e+ + d +++ a   + l+   el+p la         ++ ++g+R++++D+ P++G+ p
  MMETSP1061-20121228|6202_1 208 SAFWLDATQARELEPHLHpdVVGGWWFPEDASVDARRLTcslKAACVGAGVEFLCGPRNEVTALDLQDGTckgiW-LGSESGRYVVAKAVLVANGAWMRNLLP---VPLEPHKGQSLSLRMpKDRPPILKRVLFgGDSYIVPKADGRIVIGATVEAGSFDSSVTPAGIMHVLSYALELVPGLAD-----LPIEETWAGLRPTTPDKGPILGETP 412
                 57788888888865443322579***************8333445555666999999*******98665446656.5688*******************9999...6********87776514457888999873589*******************************************544.....578999****************987 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.47
   TIGR03197 345 pgLYvllglGSRGllsapLaaelLaaqilge 375
                 ++L++++g+   G+l ap  + lLa +i ++
  MMETSP1061-20121228|6202_1 414 DNLFLAGGYWRNGVLLAPKTGHLLATLIANQ 444
                 89*************************9986 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-05    0.0019       2      84 ..      56     150 ..      55     160 .. 0.82
   2 !   20.0   0.0   4.1e-07   6.5e-05     109     223 ..     208     330 ..     198     343 .. 0.84
   3 !    7.8   0.0    0.0021      0.33     273     341 ..     343     412 ..     337     426 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.2e-05
   TIGR03364   2 dvvvvGaGivGlahAlaaar..rGlkVtvierssraaG........AsvrNFGqvvvtgqa..agealelarrsreiwlelaekaglsvrenGsl 84 
                 dvv+vG+G+ Gl++Al  ++     ++t++++++  +G        As+   G+  +   +  +ge  +l ++sr++++++ + ++  ++e+Gs 
  MMETSP1061-20121228|6202_1  56 DVVIVGGGLAGLSTALYLTQidPERRITILDKNEDSNGkapsagnmASMAAAGMLAPNSERlpRGEYRDLCMASRRMYADFTALVEGMAQESGSE 150
                 9**************98765225789*******999886666566678888888888876433799999****************9999999996 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 4.1e-07
   TIGR03364 109 svelLspaevaaklpalrldgllgglhladelrvepreaipalaeyLaeekgveflw..ntavtevets.......tvrtsrGevh.aeqvlVcsgadfetLfpelfaasevrrckLqMlrvapq 223
                 s+  L +++++++ p      ++gg +++++++v+ r+    l++    + gvefl   +++vt+++ +        + ++ G+ + a+ vlV +ga +++L+p  ++ ++ +   L+M + +p+
  MMETSP1061-20121228|6202_1 208 SAFWLDATQARELEP-HLHPDVVGGWWFPEDASVDARRLTCSLKAACVGA-GVEFLCgpRNEVTALDLQdgtckgiWLGSESGRYVvAKAVLVANGAWMRNLLPVPLEPHKGQSLSLRMPKDRPP 330
                 566799999******.777889**********************999988.999986325778877555568888878899999888********************************987776 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0021
   TIGR03364 273 vsqeedGeliiGDsHeyeaaaepFddeevdelllaeakeilglkelevverWqGvYassk.eaeilveei 341
                 +++++dG ++iG + e ++ ++    + + ++l   ++ + gl +l ++e+W+G  + ++ + +il e++
  MMETSP1061-20121228|6202_1 343 IVPKADGRIVIGATVEAGSFDSSVTPAGIMHVLSYALELVPGLADLPIEETWAGLRPTTPdKGPILGETP 412
                 57899**************************************************999994445555555 PP

>> TIGR03329  Phn_aa_oxid: putative aminophosphonate oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   8.8e-08   1.4e-05      20      65 ..      50      95 ..      37     110 .. 0.81
   2 ?   -0.2   0.0      0.46        72     170     239 ..     230     306 ..     223     310 .. 0.74
   3 !   13.9   0.0   2.4e-05    0.0038     290     397 ..     347     447 ..     337     463 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 8.8e-08
   TIGR03329 20 kgdteadvaivGGGftGlwtaillkqaepkldvlvleadlcGaGas 65
                +++ + dv+ivGGG +Gl ta+ l q +p+ ++++l+++    G +
  MMETSP1061-20121228|6202_1 50 SKQLHKDVVIVGGGLAGLSTALYLTQIDPERRITILDKNEDSNGKA 95
                5567789*****************************9976666554 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.46
   TIGR03329 170 eGlyspvaasvqpgklvrGlrrvalelGveiy....ertpmtkleegqpavv..rtpsgk.vkaekvvlalnawmae 239
                  G++ p  asv+  +l   l+   +  Gve      ++ +  +l++g+   +   + sg+ v a+ v++a  awm +
  MMETSP1061-20121228|6202_1 230 GGWWFPEDASVDARRLTCSLKAACVGAGVEFLcgprNEVTALDLQDGTCKGIwlGSESGRyVVAKAVLVANGAWMRN 306
                 6999*************************986333334455677888776551144555447788888888899976 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 2.4e-05
   TIGR03329 290 pdGrlmlGkGGntfayagrilpvfdkpspyealltkslrkffpalaevpiaaswnGasdrsvtGlpffGkleearnvfyGfGysGnGvapsymGGqilsslvlgldne 397
                 +dGr+++G   +  ++++ ++p     +   + l  +l +++p la+ pi+ +w+G    + +  p +G+     n+f   Gy  nGv  +   G++l++l+ ++ n+
  MMETSP1061-20121228|6202_1 347 ADGRIVIGATVEAGSFDSSVTP-----AGIMHVLSYAL-ELVPGLADLPIEETWAGLRPTTPDKGPILGETP-WDNLFLAGGYWRNGVLLAPKTGHLLATLIANQKNN 447
                 6777777777777777776654.....44556666666.699***************************975.67999999********************9766554 PP

>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   1.3e-11   2.1e-09     112     306 ..     212     400 ..     205     406 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 1.3e-11
   TIGR03377 112 ldpeealrlePalnkelikavkvp.DgtvDpfrlvaanvldakehGarilt..ytkvvgliregdrvtgvkvedlktgeeeeieaevvvnaaGaWaqeiaeladlkielvpakGvllvlnh.RlnnkvinRlrkpsdaDilvPgdtisllGttsekvddiddleveqeevdelldegakliPalaeaRilrafaGvRPL 306
                 ld+++a++leP+l +++++ ++ p D++vD  rl+ +  ++    G ++l    ++v+ l  ++++ +g+ + +    +   + a+ v+ a GaW  ++     l + l p+kG  l l + +    ++ R+   +d+ i+  +d   ++G t e   +  d +v+++ + ++l    +l+P la+  i  ++aG RP 
  MMETSP1061-20121228|6202_1 212 LDATQARELEPHLHPDVVGGWWFPeDASVDARRLTCSLKAACVGAGVEFLCgpRNEVTALDLQDGTCKGIWLGSE---SGRYVVAKAVLVANGAWMRNL-----LPVPLEPHKGQSLSLRMpKDRPPILKRVLFGGDSYIVPKADGRIVIGATVEA-GSF-DSSVTPAGIMHVLSYALELVPGLADLPIEETWAGLRPT 400
                 7899******************9879**********99999999999988633789**************98764...456788999********9998.....7899******98887762455689***********998899999***99775.444.568999*******************************6 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   8.4e-07   0.00013       1      40 [.      56      96 ..      56     110 .. 0.83
   2 ?   -2.4   0.0       2.3   3.6e+02      31      66 ..     439     473 ..     429     477 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 8.4e-07
   TIGR01988  1 divIvGgGlvGlalAlaLassa.dlkvalveakaaekaksp 40
                d+vIvGgGl+Gl++Al L +   + +++++++++ ++ k+p
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLTQIDpERRITILDKNEDSNGKAP 96
                9******************87789********977664444 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2.3
   TIGR01988  31 akaaekakspafdnRvsAlsaasiellekigvwdkl 66 
                 +  a++++++  d++ s+ls + +++l+++ +wd+ 
  MMETSP1061-20121228|6202_1 439 TLIANQKNNNNEDEKQSTLSREDRAMLDAF-AWDRF 473
                 333444556667999999999999999999.78876 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.2e-06   0.00082       1      50 [.      56     106 ..      56     117 .. 0.80
   2 ?   -0.0   0.0      0.38        61     158     194 ..     273     306 ..     244     313 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.2e-06
   TIGR01813   1 dvvvvGsGlAGlsaaleakkag.laevvvleKapviGGNsaiaaggmnaak 50 
                 dvv+vG GlAGls+al +++    + + +l+K +   G +  a+   ++a 
  MMETSP1061-20121228|6202_1  56 DVVIVGGGLAGLSTALYLTQIDpERRITILDKNEDSNGKAPSAGNMASMAA 106
                 8***************999865257899****9999998766665555554 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.38
   TIGR01813 158 kddqgqvtGvkvkekgkkikikaakaVvlatGGfgsn 194
                   ++g+ +G+   +++++  ++ akaV++a G + +n
  MMETSP1061-20121228|6202_1 273 L-QDGTCKGIWLGSESGR--YVVAKAVLVANGAWMRN 306
                 3.6778888888776654..56689*********988 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.8e-06   0.00029       1      37 [.      56      93 ..      56     109 .. 0.85
   2 ?   -3.0   0.0       3.3   5.2e+02     315     340 ..     510     535 ..     504     538 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.8e-06
   TIGR01984  1 dviivGgglvGlslAlaLsrks.klkialieaksaeaa 37
                dv+ivGggl+Gls+Al L +   + +i+++++++ ++ 
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLTQIDpERRITILDKNEDSNG 93
                8*******************9999********988776 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 3.3
   TIGR01984 315 kdlGeaallqeylkerkeDraatigl 340
                 ++lG++ + +   +er++Dr+++ g 
  MMETSP1061-20121228|6202_1 510 TELGSYSTARSAGEERQKDRKSMFGS 535
                 5789999999999********99875 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   6.7e-06    0.0011       1      40 [.      57      98 ..      57     105 .. 0.87
   2 ?    0.3   0.0      0.47        74     393     408 ..     410     425 ..     399     430 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 6.7e-06
   TIGR03467  1 vvvvGgGlAGLaAAveLaraG..vrvtllEarrqlGGRarsf 40
                vv+vGgGlAGL+ A+ L++    +r+t+l+  +   G+a s 
  MMETSP1061-20121228|6202_1 57 VVIVGGGLAGLSTALYLTQIDpeRRITILDKNEDSNGKAPSA 98
                89***************9876559999999999999999886 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.47
   TIGR03467 393 rtplpnlfLAGDwtat 408
                 +tp+ nlfLAG + + 
  MMETSP1061-20121228|6202_1 410 ETPWDNLFLAGGYWRN 425
                 7**********99765 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.2e-06   0.00035       3      38 ..      55      90 ..      53     102 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.2e-06
   TIGR00562  3 kkvvvvGgGisGLciayalekerpdvelvlvEakdR 38
                k+vv+vGgG++GL++a +l +  p+  ++++++++ 
  MMETSP1061-20121228|6202_1 55 KDVVIVGGGLAGLSTALYLTQIDPERRITILDKNED 90
                89***************************9998765 PP

>> TIGR01789  lycopene_cycl: lycopene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   8.8e-06    0.0014       1      38 [.      56      93 ..      56     100 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 8.8e-06
   TIGR01789  1 dvivvGgGlagglialrlqdarPdlrilvieaaasigG 38
                dv++vGgGlag   al l++  P+ ri +++  +   G
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLTQIDPERRITILDKNEDSNG 93
                89***************************998776655 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.5e-05     0.007       3      40 ..      55      95 ..      53     113 .. 0.77
   2 ?   -0.6   0.0      0.56        88     151     187 ..     267     302 ..     250     306 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.5e-05
   TIGR00551  3 advvviGsGaagLsaalal...aekyrvvvlskaevkesas 40
                +dvv++G+G+agLs al l   +++ r+++l k+e  ++ +
  MMETSP1061-20121228|6202_1 55 KDVVIVGGGLAGLSTALYLtqiDPERRITILDKNEDSNGKA 95
                79**************98722256778****9997666654 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.56
   TIGR00551 151 valdllietgrvvGvlvvesetvevlhakavvlatGG 187
                  ++ l +++g + G+++ + e+   + akav++a G 
  MMETSP1061-20121228|6202_1 267 EVTALDLQDGTCKGIWLGS-ESGRYVVAKAVLVANGA 302
                 46678889********988.666788899*****995 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00022     0.035       2      24 ..      56      78 ..      55     101 .. 0.78
   2 ?    0.3   0.0      0.34        54      54     115 ..     240     307 ..     234     314 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00022
   TIGR01292  2 dviiiGaGpaGltaaiYaaranl 24
                dv+i+G+G aGl++a+Y ++ + 
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLTQIDP 78
                9****************987654 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.34
   TIGR01292  54 isgselmekmkeqakkfgaeiil...eevkkvdkkerpfk.vlte..dekeykakaviiAtGakarkl 115
                 + + +l+ ++k+ ++  g+e++    +ev+ +d ++ + k ++++  +++ + akav++A Ga  r+l
  MMETSP1061-20121228|6202_1 240 VDARRLTCSLKAACVGAGVEFLCgprNEVTALDLQDGTCKgIWLGseSGRYVVAKAVLVANGAWMRNL 307
                 55666666777777777777765555778888887764331333322778889**********98875 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   9.4e-05     0.015       2      33 ..      56      89 ..      55     141 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.4e-05
   TIGR02032  2 DvvvvGaGpaGssaAlrlak..kGlrVlllekke 33
                Dvv+vG+G aG s+Al+l +    +r+ +l+k+e
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLTQidPERRITILDKNE 89
                *****************98722458888888876 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.078        12       2      21 ..      56      75 ..      55     101 .. 0.81
   2 ?   -1.4   0.0       1.1   1.7e+02     188     204 ..     292     308 ..     281     315 .. 0.80
   3 !    7.2   0.0    0.0025      0.39     308     366 ..     393     451 ..     354     464 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.078
   TIGR01377  2 DvivvGaGvmGsaaayqLak 21
                Dv++vG G  G ++a +L +
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLTQ 75
                9****************986 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.1
   TIGR01377 188 qakklvvtaGaWtskLl 204
                  ak ++v+ GaW+ +Ll
  MMETSP1061-20121228|6202_1 292 VAKAVLVANGAWMRNLL 308
                 588999*******9998 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0025
   TIGR01377 308 telCmytktPDedfvlDlhpkyydnvvigaGfsGhGfklapvvGkiLaelamklea..eyd 366
                 t   +  +tPD   +l   p   dn+ +++G+   G  lap  G++La l  + +   + d
  MMETSP1061-20121228|6202_1 393 TWAGLRPTTPDKGPILGETP--WDNLFLAGGYWRNGVLLAPKTGHLLATLIANQKNnnNED 451
                 44556678************..69*************************987766533444 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00077      0.12     120     172 ..      30      81 ..      11     108 .. 0.75
   2 ?    1.5   0.0      0.18        28      43      77 ..     225     259 ..     223     274 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00077
   TIGR03169 120 vpvKPleellaaweellekakaseetkslavvGgGaagvElalalrkrlkkrg 172
                 +p +P  +l + ++++ ++  +++  k++++vGgG+ag+  al l++  ++r 
  MMETSP1061-20121228|6202_1  30 YPSQPSPSLSSLVPNVPRRR-SKQLHKDVVIVGGGLAGLSTALYLTQIDPERR 81 
                 56666666666566665554.455567***************99998877765 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.18
   TIGR03169  43 lPgliaghysedeiridlrrlaekagaelvedeat 77 
                  P++++g +  +++++d rrl+ + +a++v + + 
  MMETSP1061-20121228|6202_1 225 HPDVVGGWWFPEDASVDARRLTCSLKAACVGAGVE 259
                 59**********************99999987765 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   0.00013      0.02       1      41 [.      57      99 ..      57     102 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00013
   TIGR00275  1 viiiGgGaaGlmaAitaae..egakVlllEknkkigkKllvsG 41
                v+i+GgG aGl +A+ + +   ++++++l+kn+    K   +G
  MMETSP1061-20121228|6202_1 57 VVIVGGGLAGLSTALYLTQidPERRITILDKNEDSNGKAPSAG 99
                79*************99999899*********99887776666 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00015     0.024      20      44 ..      53      77 ..      42     105 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00015
   TIGR00292 20 aesDviivGaGpsGLtaayylakeg 44
                +  Dv+ivG+G +GL++a yl +  
  MMETSP1061-20121228|6202_1 53 LHKDVVIVGGGLAGLSTALYLTQID 77
                678******************8754 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00014     0.022       1      35 [.      56      92 ..      56      97 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00014
   TIGR01790  1 DliviGgGlAglaiAlela..kpglrvqlieaapklp 35
                D++++GgGlAgl  Al l+   p+ r+ +++ +++  
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLTqiDPERRITILDKNEDSN 92
                9*****************9777889999999887765 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0012      0.19       6      37 ..      56      89 ..      51     101 .. 0.74
   2 ?    0.3   0.0      0.27        43      54     117 ..     237     307 ..     232     313 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0012
   TIGR03143  6 dlvviGgGpaglsaGiyagra..klkvliiekde 37
                d+v++GgG agls+ +y+++   + ++ i++k+e
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLTQIdpERRITILDKNE 89
                8999999999999999988742245666677654 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.27
   TIGR03143  54 ireitGeelmqemrkqaqdfgvkfl...qaevldvdle.gdiktv..ktakgdl.kalavliatGasprkl 117
                    +  ++l+ ++++   + gv+fl   ++ev+ +dl+ g+ k +   +++g +  a avl+a Ga  r+l
  MMETSP1061-20121228|6202_1 237 DASVDARRLTCSLKAACVGAGVEFLcgpRNEVTALDLQdGTCKGIwlGSESGRYvVAKAVLVANGAWMRNL 307
                 5667778899999999999999*98444689*****9626889883346666652689********99986 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0    0.0003     0.047       2      21 ..      56      75 ..      55      88 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0003
   TIGR03378  2 DviiiGgGlaGlscalrlae 21
                Dv+i+GgGlaGls+al l++
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLTQ 75
                9***************9876 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00028     0.044       1      38 [.      57      96 ..      57     101 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00028
   TIGR02734  1 avViGaGlgGLAlAirLaa..aGievtvlekrdkpGGRag 38
                +v++G+Gl+GL++A+ L +    +++t+l+k+++  G+a 
  MMETSP1061-20121228|6202_1 57 VVIVGGGLAGLSTALYLTQidPERRITILDKNEDSNGKAP 96
                689**************872246899******99999875 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.1   0.00053     0.083       1      29 [.      56      86 ..      56     109 .. 0.78
   2 ?   -1.9   0.0       1.1   1.8e+02     139     189 ..     253     302 ..     245     306 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00053
   TIGR01812  1 DvvivGaGlAGlraAveaakkg..lkvavis 29
                DvvivG+GlAGl +A+ +++ +   ++ ++ 
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLTQIDpeRRITILD 86
                9**************9998876555566555 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.1
   TIGR01812 139 llklgveif..eeyfvldliledkevkGvvaidlktgevvvlrakavvlatGG 189
                 ++ +gve++   + +v++l l+d+++kG+ +      +  ++ akav++a G 
  MMETSP1061-20121228|6202_1 253 CVGAGVEFLcgPRNEVTALDLQDGTCKGIWL---GSESGRYVVAKAVLVANGA 302
                 66666666533466777888889999*9864...4555667889******996 PP

>> TIGR01176  fum_red_Fp: fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00062     0.099       3      37 ..      54      88 ..      52     107 .. 0.87
   2 ?   -2.5   0.0       1.9     3e+02      60      83 ..     219     242 ..     214     248 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00062
   TIGR01176  3 qadiavigaggaglraaiaaaeanphlevaliskv 37
                ++d++++g+g agl +a+  ++ +p+  ++++ k 
  MMETSP1061-20121228|6202_1 54 HKDVVIVGGGLAGLSTALYLTQIDPERRITILDKN 88
                689***************************99885 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.9
   TIGR01176  60 sldehfhdtvaggdwlceqdvvey 83 
                  l+ h+h  v gg w+ e+  v++
  MMETSP1061-20121228|6202_1 219 ELEPHLHPDVVGGWWFPEDASVDA 242
                 6899*************9999986 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0    0.0009      0.14       2      37 ..      56      89 ..      55     101 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0009
   TIGR01989  2 DvvivGgGlvGlalAaalkknpslkdkkvllldavd 37
                DvvivGgGl+Gl+ A  l+  +   ++++++ld ++
  MMETSP1061-20121228|6202_1 56 DVVIVGGGLAGLSTALYLT--QIDPERRITILDKNE 89
                9**********98776665..556788999999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                        27  (0.00658216); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              26  [number of targets reported over threshold]
# CPU time: 0.63u 0.15s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 2438.80
//
Query:       MMETSP1061-20121228|6203_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2001.83
//
Query:       MMETSP1061-20121228|6205_1  [L=555]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (555 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.25
# Mc/sec: 2930.16
//
Query:       MMETSP1061-20121228|6201_1  [L=1319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.13s 00:00:00.76 Elapsed: 00:00:00.52
# Mc/sec: 3347.95
//
Query:       MMETSP1061-20121228|6207_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.49
# Mc/sec: 342.09
//
Query:       MMETSP1061-20121228|6206_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-95  315.4   7.3    1.2e-94  315.1   5.0    1.1  1  TIGR03718 R_switched_Alx: integral membrane protein, TerC family
    1.1e-19   68.8   5.9    1.9e-19   68.0   4.1    1.3  1  TIGR03716 R_switched_YkoY: integral membrane protein, YkoY family
    6.8e-09   33.5   2.2    1.6e-08   32.4   1.5    1.6  1  TIGR03717 R_switched_YjbE: integral membrane protein, YjbE family


Domain annotation for each model (and alignments):
>> TIGR03718  R_switched_Alx: integral membrane protein, TerC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.1   5.0   8.5e-98   1.2e-94      36     301 ..     115     381 ..     111     383 .. 0.97

  Alignments for each domain:
  == domain 1    score: 315.1 bits;  conditional E-value: 8.5e-98
   TIGR03718  36 allwslvwvalallFavlvylllgaeaalefltgyllEksLsvDNlfvfllifssfavprelqhrvLlwGilgalvlRaifialGaalleqfswvlyifgafliytgvkmlle..eeeeedleenllvrllkkvlpvtdklegekffvrekgkrlatplllvlvlveltdliFAvDSiPaifavtqdpfivytsnifailGLralYfllagllerlvyLkyglaviLvfigvKlllseaelveipiavsLavivavlavsvvasllkt 301
                 a+  +l+wva a+ +++l+ +++g+e++ ef++gyllE+sLs+DNl+vfll+f++f+vp e+q+r+L wGi+ga+v+Ra +i +Ga  l++++ vl++f+ +l+y+++k+++   ++eeedl+en++v++++++++ td+++g++ff++ +g r+atp+ll++++ve++d++FAvDSiPaif+vt+dp++v++sn+fai+GLr+lY +l++++++l+yL++++av+L fig Kl+ +++ + +i++ vsL+v+v++l+ +v+asll +
  MMETSP1061-20121228|6206_1 115 AIRRTLLWVAGAIGYGFLLIFVAGPETSGEFYAGYLLEQSLSIDNLLVFLLLFEYFKVPMEYQNRILDWGIIGAIVMRATMIGAGAVALKEVREVLLVFAGVLLYSSFKVIVGedDDEEEDLSENAIVKFANNLFKSTDQFDGDRFFTQIDGIRTATPMLLCMIAVEISDVVFAVDSIPAIFGVTEDPLVVFSSNMFAIMGLRSLYIILSKAASELKYLEKAVAVVLGFIGGKLIAEYFGI-QISTEVSLGVVVSMLGGGVAASLLDK 381
                 677899*********************************************************************************************************9866679999*******************************************************************************************************************97776.**********************9865 PP

>> TIGR03716  R_switched_YkoY: integral membrane protein, YkoY family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.0   4.1   1.4e-22   1.9e-19       7     178 ..     150     351 ..     147     371 .. 0.92

  Alignments for each domain:
  == domain 1    score: 68.0 bits;  conditional E-value: 1.4e-22
   TIGR03716   7 vlEglLsaDnAvvlAvlvk..hLPekqrkkaLfYgliGAyvfRfialllasf.liklweikalgalYLlylalkhllkkkkekeeeekekkkek...........................keFWktvikveladlaFsvDsilaavalsekllvvllGgllGillmRfvaelfvkllekipeLetaAfllvglvgvkllle 178
                 +lE  Ls Dn +v+ +l +  ++P + +++ L +g+iGA v+R ++++++++ l ++ e+ ++ a  Lly ++k ++ + +++ee+ +e++  k                           +     +i ve+ d++F+vDsi a ++++e+ lvv+   ++ i+ +R +  ++ k   ++  Le+a  +++g++g kl+ e
  MMETSP1061-20121228|6206_1 150 LLEQSLSIDNLLVFLLLFEyfKVPMEYQNRILDWGIIGAIVMRATMIGAGAVaLKEVREVLLVFAGVLLYSSFKVIVGEDDDEEEDLSENAIVKfannlfkstdqfdgdrfftqidgirtaTPMLLCMIAVEISDVVFAVDSIPAIFGVTEDPLVVFSSNMFAIMGLRSLYIILSKAASELKYLEKAVAVVLGFIGGKLIAE 351
                 69999********9998764478*************************9765277899***********************9999999998888999**********************99899999************************************************************************985 PP

>> TIGR03717  R_switched_YjbE: integral membrane protein, YjbE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   1.5   1.1e-11   1.6e-08      12     174 ..     155     350 ..     149     356 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.1e-11
   TIGR03717  12 LagDnavvialaar..kLpkkqrkkailvGvaaAvvlRilla.lvavllLeipllkliggllLlwiavkllleeeeeeeeeekase...............................tllkaiktiviADvvmslDnvlavagaakgellllvlGlllsiplivlgsk..lvlkllerfpliiyigaallayvagemlv 174
                 L+ Dn +v  l  +  k+p + +++ + +G+++A+v+R +++ + av l e+  + l+ + +Ll+ ++k++  e+++eee+ ++++                                +l  +  + i Dvv+++D + a+ g++++ l++    +    +++ l s   +++k  ++++ +  + a++l++++g++++
  MMETSP1061-20121228|6206_1 155 LSIDNLLVFLLLFEyfKVPMEYQNRILDWGIIGAIVMRATMIgAGAVALKEVREVLLVFAGVLLYSSFKVIVGEDDDEEEDLSENAivkfannlfkstdqfdgdrfftqidgirtatPMLLCMIAVEISDVVFAVDSIPAIFGVTEDPLVVFSSNM---FAIMGLRSLyiILSKAASELKYLEKAVAVVLGFIGGKLIA 350
                 7888888888776523678999999999**********9988356888999*999999999999************999998877799**************************9998888999999*****************999554433322...3445555441144567777777777788888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2177.82
//
Query:       MMETSP1061-20121228|6209_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   15.7   0.0     0.0064   14.8   0.0    1.5  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.5e-06    0.0064     100     126 ..     208     236 ..     170     250 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.5e-06
   TIGR01444 100 lveeag..lekvdllKiDvEGaEleVLrg 126
                 ++e+ g     +d+lKiD+EG+E +  ++
  MMETSP1061-20121228|6209_1 208 IMEQLGhkNRIIDILKIDCEGCEWSTFKD 236
                 554444323569***********987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1773.24
//
Query:       MMETSP1061-20121228|6211_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 3189.74
//
Query:       MMETSP1061-20121228|6210_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 2016.25
//
Query:       MMETSP1061-20121228|6212_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-15   52.2   3.0    1.2e-14   51.8   2.1    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
      9e-08   28.3   4.7    1.2e-07   27.9   3.2    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    5.5e-06   24.0   0.4     0.0022   15.5   0.0    2.3  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
      3e-05   21.5   4.3    3.9e-05   21.1   0.8    2.2  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0012   17.3   0.5     0.0027   16.1   0.4    1.6  1  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
  ------ inclusion threshold ------
       0.01   13.1   0.0      0.015   12.5   0.0    1.2  1  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
      0.027   10.4   0.0      0.039    9.9   0.0    1.1  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   2.1     2e-17   1.2e-14     119     253 ..      13     150 ..       2     188 .. 0.87

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 2e-17
   TIGR00990 119 seeerkkyaaklkekGnkayrnkdfdkaielyskalllke.dPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltasslid.dfrdeqsa.qaverllkkfaeskakeilet 253
                  ++  ++ a++lk++Gn   +   f +ai++ys al+  + + +  snra  y  + ++   ++d+ aale dp+y ka  rr +++  lg+ +da  d+ ++++ +   +d++++ +a e+ ++  a  ka e  +t
  MMETSP1061-20121228|6212_1  13 DASANEAKALELKNQGNDQLKIGLFLQAIDFYSDALEYSPtNAIILSNRAQAYIKVENYGLAMADASAALESDPKYAKAYYRRGSSQFALGHLKDAKKDFRTVCVLNpKSKDARAKlKACEKAIREEAFRKAIESEKT 150
                 45667788*****************************99836799*******************************************************88886551667766543799****99999999887665 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   3.2     2e-10   1.2e-07     121     246 ..      17     144 ..       5     164 .. 0.69

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 2e-10
   TIGR02917 121 deeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaal..lalatilleegefeeA 246
                 +e +a  l  +g+ +L+ g + +A +++++Al+ +p+++      Aq  ++ +++  a+a ++++L+ dpk ++A+  +g+ ++++g  + A +++r +  l+p+++ a+  l +   +++e+ f +A
  MMETSP1061-20121228|6212_1  17 NEAKALELKNQGNDQLKIGLFLQAIDFYSDALEYSPTNAIILSNRAQAYIKVENYGLAMADASAALESDPKYAKAYYRRGSSQFALGHLKDAKKDFRTVCVLNPKSKDARakLKACEKAIREEAFRKA 144
                 33333334456777888888888888888888888888888877777777778888888888888888888888888888888888888888888888888888776554003444455555555555 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.2    0.0013      0.78      69     115 ..      38      84 ..      31      91 .. 0.88
   2 !   15.5   0.0   3.8e-06    0.0022      12      67 ..      83     138 ..      77     147 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0013
   TIGR02552  69 eeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaiei 115
                  +Ai++Y+ a+  ++ +++ +  +a+ +++++++  A+++  +a+e 
  MMETSP1061-20121228|6212_1  38 LQAIDFYSDALEYSPTNAIILSNRAQAYIKVENYGLAMADASAALES 84 
                 58***********************************9988877765 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 3.8e-06
   TIGR02552  12 gldeeqleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalke 67 
                 + d++  +a Y+ +  +++ g +++A+k F+  ++l+p +++  + L ac +a  e
  MMETSP1061-20121228|6212_1  83 ESDPKYAKAYYRRGSSQFALGHLKDAKKDFRTVCVLNPKSKDARAKLKACEKAIRE 138
                 55666667889999999****************************99999988765 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.1     0.081        48      61     104 ..      10      60 ..       8      61 .. 0.73
   2 !   21.1   0.8   6.6e-08   3.9e-05      37     101 ..      61     125 ..      54     151 .. 0.94

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.081
   TIGR02521  61 dpkdadanlalAlyyqqlgele.......kAeesfrkAltlkpnngdvlNN 104
                 d +da+an a Al ++++g+++       +A + + +Al+ +p n+ +l N
  MMETSP1061-20121228|6212_1  10 DQDDASANEAKALELKNQGNDQlkiglflQAIDFYSDALEYSPTNAIILSN 60 
                 778888888888888888866533444447888999999999888877765 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 6.6e-08
   TIGR02521  37 LaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                  a +Y++ +++  A ++   Ale+dpk+a+a+  ++     lg+l+ A++ fr+   l+p++ d+
  MMETSP1061-20121228|6212_1  61 RAQAYIKVENYGLAMADASAALESDPKYAKAYYRRGSSQFALGHLKDAKKDFRTVCVLNPKSKDA 125
                 6889********************************************************99886 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.4   4.7e-06    0.0027      10      80 ..      63     129 ..      57     152 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.7e-06
   TIGR02795  10 llvlkegdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdall 80 
                 + ++k  +Y  A +   a l++   +++ + A+Y +G +++a +++kdA+k f++v   +pks+ a    l
  MMETSP1061-20121228|6212_1  63 QAYIKVENYGLAMADASAALES---DPKYAKAYYRRGSSQFALGHLKDAKKDFRTVCVLNPKSKDARAK-L 129
                 5555666666665555555554...4567899*************************999998766443.3 PP

>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.6e-05     0.015       5     125 ..     257     376 ..     254     393 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.6e-05
   TIGR00668   5 ligdlhgcydelqlllervefdpakdtlyl.tgdlvargdkslevl.ryv.kslgd..avrlvlgnhdlhllavalgikkvkpkdrldalleapdadellnwlrrqpllvvdeekklvlahagisp 125
                 + gd hg y ++  ++e+ +  pa  + yl  gd+v rg  s+ev+  y+   + d  +++l  gnh+ + +  + g +        d ++e   + e+  +l   pl  v   kk+ +ah gis 
  MMETSP1061-20121228|6212_1 257 VCGDTHGQYYDVLNIFEKKNGYPAATNPYLfNGDFVDRGSFSVEVIlTYLlWKIHDpaCIHLTRGNHETKNMNKIYGFEGEVKSKYDDKIFEL--FLEVFSYL---PLAAVIG-KKVFVAHGGIST 376
                 679****9999999999999888888877637************8524532455551145667789998887777766533222222333332..33444443...5554443.344456777765 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   6.6e-05     0.039     225     273 ..     285     335 ..     260     350 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 6.6e-05
   TIGR04075 225 avflGdlvdrGpdspdvlr..lvmsmvkagaalcvpGnheekllrklrGrk 273
                  +f Gd+vdrG  s++v+   l  ++ +       +Gnhe+k + k+ G +
  MMETSP1061-20121228|6212_1 285 YLFNGDFVDRGSFSVEVILtyLLWKIHDPACIHLTRGNHETKNMNKIYGFE 335
                 689*************97411344444444445568******999998854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 2067.83
//
Query:       MMETSP1061-20121228|6208_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2942.87
//
Query:       MMETSP1061-20121228|6214_1  [L=1056]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1056 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 3573.86
//
Query:       MMETSP1061-20121228|6213_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-24   84.8   0.3    2.6e-21   73.9   0.1    2.0  2  TIGR02483 PFK_mixed: phosphofructokinase
    5.4e-18   62.9   0.2    1.5e-17   61.4   0.1    1.7  2  TIGR02482 PFKA_ATP: 6-phosphofructokinase
    1.3e-14   51.2   0.0    2.5e-13   46.9   0.0    2.0  1  TIGR02478 6PF1K_euk: 6-phosphofructokinase
    2.5e-14   50.5   1.2    8.4e-14   48.7   0.3    2.2  2  TIGR02477 PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase
     0.0018   16.2   0.1     0.0044   15.0   0.0    1.6  1  TIGR00250 RNAse_H_YqgF: RNAse H domain protein, YqgF family


Domain annotation for each model (and alignments):
>> TIGR02483  PFK_mixed: phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.1   3.2e-24   2.6e-21       2     180 ..      23     227 ..      22     231 .. 0.83
   2 !    9.1   0.0   0.00016      0.13     189     308 ..     257     382 ..     252     396 .. 0.77

  Alignments for each domain:
  == domain 1    score: 73.9 bits;  conditional E-value: 3.2e-24
   TIGR02483   2 igvltgGGDcpGLnaviravvkkaiae......ygaevvgiregykGlle.ed.lvklldledvegilarGGtilgssrtnpfkkeeeae...........dkikenlkelgldaliaiGGdgtlkiakelae......kgglkvvGvPktiDnDleatdvtfGfdtaveiatealdrlkttaesheRvlvv.evmGReaGwiaL 180
                 +g++t+GG +p L   i  + k  i+        g ++  + +gy+G+l+ ++ +v+  +  ++e++   GG  +g sr +  + +  ++           + + ++l   ++ +l +iGGd+t + a  l++      +g++ v+G+PktiDnD+    +tfG dta +      + + +  ++  R+lv+ evmGR+ G+++ 
  MMETSP1061-20121228|6213_1  23 VGMMTSGGLAPCLSSSIAQLSKYWIEAlaegkiSGLTLRMYVDGYSGVLTgHSfVVPESEWGNMEKLNFLGGSPIGNSRVKLTNLADCEKrgfiksgekplEVASQRLLADNIHVLHTIGGDDTNTQAAVLSKylmdehNGSVIVIGMPKTIDNDVVPIAQTFGADTAANQGAIFFQNVVNESTANPRMLVLhEVMGRDCGYLTA 227
                 89***************99998655441112223556667889*******6331456667789***************999888665555789*****9999999*******************999987764333333789****************************999999999999999999999779********985 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00016
   TIGR02483 189 dviliPevpfdidevvekveereergkkfaivvvaegakpke....gelalkekakdaageerlgGi..gkalaeeiekrlgkeaRavv.LghlqRGgspsafDRvlatrfgvkavdlveegkfgkm 308
                 ++i iPe++ d+ +  +++++  ++ +    v   eg   +e    +e + +e  +da+g+++l  i  g++ +++++k l++e   v   g+  R + +  fDR l    +   v    +g+ g m
  MMETSP1061-20121228|6213_1 257 HAIWIPELELDLVAEGARLKKVMDE-NGCVNVFFGEGTGVEEivrdMESQGEEVPRDAFGHVTLNKInpGQYFSKRLAKYLDAEKTIVQkSGYFARSAAANEFDRELIGECAKVGVASAISGQSGCM 382
                 7899***999998888888888887.444557788987665511114555567778999******99779************99765532699************9987777776666666666655 PP

>> TIGR02482  PFKA_ATP: 6-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.1   1.8e-20   1.5e-17       2     179 ..      23     229 ..      22     233 .. 0.73
   2 ?   -2.5   0.0      0.55   4.5e+02      56      79 ..     340     363 ..     324     382 .. 0.73

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 1.8e-20
   TIGR02482   2 igiLtsGGDapGmnaairavvkt.......alaqglevygirkGykGliegeivkl...eskavseiiekGGtilksaRle..eFkkeevr..........ekavenlkklgiealvviGGdGsyaGakklae......eggikviglPgtiDnDiagtdytiGfDtalntileavdkirD.tatsheraflvevmGreagdlalla 179
                 +g++tsGG ap + + i+ + k+       +++ gl      +Gy+G+++g+ + +   e  +++++   GG  ++ +R++  +    e r          e a + l + +i+ l  iGGd + + a  l +      +g++ vig+P tiDnD++    t G Dta n      +++ +      ++++l evmGr++g+l+  +
  MMETSP1061-20121228|6213_1  23 VGMMTSGGLAPCLSSSIAQLSKYwiealaeGKISGLTLRMYVDGYSGVLTGHSFVVpesEWGNMEKLNFLGGSPIGNSRVKltNLADCEKRgfiksgekplEVASQRLLADNIHVLHTIGGDDTNTQAAVLSKylmdehNGSVIVIGMPKTIDNDVVPIAQTFGADTAANQGAIFFQNVVNeSTANPRMLVLHEVMGRDCGYLTAKT 229
                 799****************99963332222456788888899********98665510144567777789********9863333332222222222223378999********************9998864322222467999*************************86666666555055555666777**********8765 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.55
   TIGR02482  56 seiiekGGtilksaRleeFkkeev 79 
                 + i++k G + +sa  +eF +e +
  MMETSP1061-20121228|6213_1 340 KTIVQKSGYFARSAAANEFDRELI 363
                 467777788888888888776654 PP

>> TIGR02478  6PF1K_euk: 6-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0     3e-16   2.5e-13       2     204 ..      22     229 ..      21     233 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 3e-16
   TIGR02478   2 kiavltsGGDaqGmnaavravvraaia.......vgckvylireGyeGlvdGGdl.ikelkWedvsgilslGGtliGtarck..efr..ereGrlk........aaknlvkkgidalvviGGdGsLtgadlfreeWsslleeLveegkiteeqakeyreLtivGlvgsiDnDlvgtDatiGadsalhriieavDaisstaashqrafvv.evmGrhCGyLalla 204
                 +++++tsGG a+ +++ +    +  i        +g    +  +Gy G++ G +  + e +W +++ ++ lGG+ iG +r k  ++   e++G +k        a++ l+  +i+ l  iGGd   t a ++ +        L++e+           ++ ++G+   iDnD+v   +t Gad+a ++      ++++ ++++ r+ v+ evmGr+CGyL+  +
  MMETSP1061-20121228|6213_1  22 NVGMMTSGGLAPCLSSSIAQLSKYWIEalaegkiSGLTLRMYVDGYSGVLTGHSFvVPESEWGNMEKLNFLGGSPIGNSRVKltNLAdcEKRGFIKsgekplevASQRLLADNIHVLHTIGGDDTNTQAAVLSK-------YLMDEH---------NGSVIVIGMPKTIDNDVVPIAQTFGADTAANQGAIFFQNVVNESTANPRMLVLhEVMGRDCGYLTAKT 229
                 689**************99998865531111111456667778*********986156899******************987332222256665543333334477899****************999998753.......344433.........3456799*************************9999999999999999*999879*********8665 PP

>> TIGR02477  PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.3     1e-16   8.4e-14     148     256 ..     121     228 ..       6     233 .. 0.74
   2 ?   -1.3   0.0      0.15   1.2e+02     412     436 ..     346     373 ..     309     385 .. 0.62

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 1e-16
   TIGR02477 148 eqfekaletvkklkldglviiGGddsntnaalLAeyfa.kkklkikviGvPktidgDLknklietsfGFdtackvyseligniarDalsakkyyhFiklmGrsashiaLe 256
                 + +e a +   + ++  l  iGGdd nt+aa+L +y + +++ ++ viG+Pktid D+    i  +fG dta+   + +  n+ +++++  +      +mGr   +++  
  MMETSP1061-20121228|6213_1 121 KPLEVASQRLLADNIHVLHTIGGDDTNTQAAVLSKYLMdEHNGSVIVIGMPKTIDNDVV--PIAQTFGADTAANQGAIFFQNVVNESTANPRMLVLHEVMGRDCGYLTAK 228
                 3345566677778999999*****************8735788999***********86..699***************************************9998865 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.15
   TIGR02477 412 fGYegRsalPsnFDsdY...cyaLGyta 436
                  GY +Rsa+  +FD +    c ++G+++
  MMETSP1061-20121228|6213_1 346 SGYFARSAAANEFDRELigeCAKVGVAS 373
                 5999999999999987422244444444 PP

>> TIGR00250  RNAse_H_YqgF: RNAse H domain protein, YqgF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   5.4e-06    0.0044       6      69 ..     119     183 ..     116     202 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5.4e-06
   TIGR00250   6 GtksiGvagqdetGltaqgleaikaqdaeqdyeriek.llkeykvdkivvGlPlnmdGtvgsltk 69 
                 G k + va q+      + l++i  +d++ + + ++k l++e++  +iv+G+P+++d +v + ++
  MMETSP1061-20121228|6213_1 119 GEKPLEVASQRLLADNIHVLHTIGGDDTNTQAAVLSKyLMDEHNGSVIVIGMPKTIDNDVVPIAQ 183
                 8899999999999999999*************99988467889999***********99987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.39
# Mc/sec: 1434.96
//
Query:       MMETSP1061-20121228|6215_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2427.66
//
Query:       MMETSP1061-20121228|6218_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1549.44
//
Query:       MMETSP1061-20121228|6219_1  [L=703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       728  (0.177474); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.76u 0.16s 00:00:00.92 Elapsed: 00:00:00.68
# Mc/sec: 1364.53
//
Query:       MMETSP1061-20121228|6217_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-60  200.6   0.0    1.1e-41  140.6   0.0    2.0  2  TIGR01179 galE: UDP-glucose 4-epimerase
    1.6e-51  173.1   0.2      2e-51  172.8   0.1    1.0  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    9.7e-42  141.0   0.1    1.9e-41  140.1   0.0    1.5  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    4.9e-40  135.3   0.0      6e-40  135.0   0.0    1.1  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    1.5e-25   87.9   0.1    7.5e-17   59.3   0.0    2.1  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    1.5e-19   68.2   0.2    2.6e-17   60.9   0.1    2.1  1  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    1.1e-16   58.5   0.0      1e-13   48.7   0.0    2.3  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    3.8e-10   37.1   0.0    1.4e-09   35.3   0.0    1.9  2  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    6.1e-10   37.0   0.0    4.5e-09   34.1   0.0    1.9  1  TIGR01777 yfcH: TIGR01777 family protein
    5.7e-09   33.2   0.0    1.4e-08   31.9   0.0    1.7  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
    3.8e-07   27.5   0.0    9.3e-07   26.2   0.0    1.6  1  TIGR01746 Thioester-redct: thioester reductase domain
     0.0012   15.1   0.0      0.002   14.4   0.0    1.3  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
     0.0029   14.9   0.0     0.0046   14.2   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
     0.0068   13.5   0.1      0.011   12.8   0.0    1.3  1  TIGR02421 QEGLA: conserved hypothetical protein
  ------ inclusion threshold ------
      0.015   12.4   0.0      0.029   11.4   0.0    1.5  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
      0.021   11.8   0.1       0.52    7.2   0.0    2.1  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.024   11.9   0.0      0.072   10.4   0.0    1.7  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
      0.036   11.6   0.0      0.059   10.9   0.0    1.3  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.0   4.6e-44   1.1e-41       1     179 [.      59     246 ..      59     254 .. 0.91
   2 !   58.0   0.0   6.4e-19   1.5e-16     221     328 ..     272     375 ..     264     379 .. 0.95

  Alignments for each domain:
  == domain 1    score: 140.6 bits;  conditional E-value: 4.6e-44
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskg.....skealkalekit....evklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYgesekvpisEespln.pinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGA 179
                 k+LvtGgaG+iGshv+  ll++g +vv++D++ +      +++ lk l+  +    +vk+++gd+ d++ le+++e+e+i+ v H+aa++ v  s+++P  Y ++nv++t++L+e+ +++g+++++F+ss++vYg s+++ +sE++ +  p++pY ++k + E +   +++  ++lkv+ LR+F v G 
  MMETSP1061-20121228|6217_1  59 KVLVTGGAGFIGSHVAEFLLDRGDDVVIIDEMNDYydvtiKESNLKLLQDSYpeegRVKIYRGDICDRKLLETIFETENIKWVCHMAARAGVRPSIQDPFVYIHSNVNATTHLMELSHRHGIENFVFASSSSVYGGSKSTFFSEDEVVDhPVSPYAATKKTCELLAYTYHHL-YNLKVTGLRFFTVYGP 246
                 79*****************************97651111145556666665578889****************************************************************************************99988*******************999.*************995 PP

  == domain 2    score: 58.0 bits;  conditional E-value: 6.4e-19
   TIGR01179 221 DGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWekkl 328
                 DG + RDy +++D+ ++ ++a++      +++++nlG+g g s+ke i+ v+k + k+  +++ +  +GD++  +ad  k+k+ lg+k+k    e+ ik++ +W k+ 
  MMETSP1061-20121228|6217_1 272 DGSSSRDYTYISDIVDGVVRAIDRPY---DYQIFNLGKGAGTSLKEFINLVQKYVCKKAVIKVLPDQPGDVPYTCADVTKAKQLLGYKSKVS-FEDGIKKTVEWYKTS 375
                 9*******************998766...7*************************************************************9.***********9875 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.8   0.1   8.8e-54     2e-51       1     314 [.      59     375 ..      59     381 .. 0.89

  Alignments for each domain:
  == domain 1    score: 172.8 bits;  conditional E-value: 8.8e-54
   TIGR01181   1 klLvtGGaGfiGsnfvryileetpdaevvvlDkLt.y...agnkenlkdled....eerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevr.llhistDevyGdlekddaeftettpl.aPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpekliPllitnalagkklpvyGdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWylen 314
                 k+LvtGGaGfiGs + +++l++ +d  vv +D+++ y   + +++nlk l+d    e r+++ +gdi+dr+l+e+++++e+++ v ++aa + v  si++p ++i++nv  t  l+e  ++  ++++ ++  s   vyG  +++   f+e + + +P sPy+a+k + +ll  +y++ y+l+v+  r    yGp   p+    ++  ++ +g +++ +GdG+  rD+ y++D + ++   +++  + +++n+g ++ ++ +e ++++ + +  ++  i+   d+pG+    + d++k k+ Lg+k kv+fe+g++ktv+Wy++ 
  MMETSP1061-20121228|6217_1  59 KVLVTGGAGFIGSHVAEFLLDRGDD--VVIIDEMNdYydvTIKESNLKLLQDsypeEGRVKIYRGDICDRKLLETIFETENIKWVCHMAARAGVRPSIQDPFVYIHSNVNATTHLMELSHR--HGIEnFVFASSSSVYGGSKST--FFSEDEVVdHPVSPYAATKKTCELLAYTYHHLYNLKVTGLRFFTVYGPRGRPDMAPFKFTDRIYRGVEMQQFGDGSSSRDYTYISDIVDGVVRAIDRPYDYQIFNLGKGAGTSLKEFINLVQKYVC-KKAVIKVLPDQPGDVPYTCADVTKAKQLLGYKSKVSFEDGIKKTVEWYKTS 375
                 68************99999998754..566666543322256788999998732224699*********************************************************9998..67766999*********9999..4666655438******************************************988889999*********************************************************99999888.6789*********65555689***************************865 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.1   0.0   8.5e-44   1.9e-41       1     315 [.      60     374 ..      60     375 .. 0.84

  Alignments for each domain:
  == domain 1    score: 140.1 bits;  conditional E-value: 8.5e-44
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrk..............gekll.nlkdeeiadyidkeellerlekeelkkveavfHegAisdTt..eldgellmenNyeyskellelcaekev.kliYASSAavYGdseeefreekele.rPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsfndlaaavvkalgkdekieyi.dmPealrgkyqkfTqadleklreagykkeflsleegvkdYvkella 315
                 ++vTGgaGfiGs ++  l ++g +d++++D++++              ++ +  + + + + ++i + +lle++ +  ++++++v H++A +      +d  + +++N++++++l+el+  +++ ++++ASS +vYG s+++f  e+e+  +P   Y+  K+  + l+   + ++  + +v+Glr+F VyGpr     +ma   fk++++i ++ +++      q+ dG  +RD++y++D+v+ ++ +++++    ifn+G g   s ++ ++ v+k + k+  i+ + d P ++      +T+ad++k+++ + +k+++s e+g+k+ v+++++
  MMETSP1061-20121228|6217_1  60 VLVTGGAGFIGSHVAEFLLDRG-DDVVIIDEMNDyydvtikesnlkllQDSYPeEGRVKIYRGDICDRKLLETIFE--TENIKWVCHMAARAGVRpsIQDPFVYIHSNVNATTHLMELSHRHGIeNFVFASSSSVYGGSKSTFFSEDEVVdHPVSPYAATKKTCELLAY--TYHHLYNLKVTGLRFFTVYGPRGR--PDMA--PFKFTDRIYRGVEMQ------QFGDGSSSRDYTYISDIVDGVVRAIDRPYDYQIFNLGKGAGTSLKEFINLVQKYVCKKAVIKVLpDQPGDV-----PYTCADVTKAKQLLGYKSKVSFEDGIKKTVEWYKT 374
                 69*****************999.9**********999999855555542222202233446678888999999887..59**********987651156666779*****************99459**********99998766666554**************9998..345666669************963..5565..589999999987765......66678888************************************************999999873467774.....8*******************************985 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.0   0.0   2.6e-42     6e-40       1     296 [.      60     359 ..      60     360 .. 0.87

  Alignments for each domain:
  == domain 1    score: 135.0 bits;  conditional E-value: 2.6e-42
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsf....nswGwldevekev..kkeievvlGdirdaesvkkav..kgvdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGtaqyvPidekhpl.qaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPtiitqilsgkkkiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkliaeilgkeveivtdeerlrPekseverlladnskikeltgwkpky 296
                 vlvtG  GfiGsh++e l+++G +v  + + n +     +   l+ +++++  + +++++ Gdi d + ++++   ++++ v h+aa  ++  s + p  y+++nv+ t+++++ ++ +++e +v +s+s vyG ++    +e+  + ++ sPy+a+k +++ la+++++ ++l v+ +r f  yGPr            +i  g +  ++G+ s +rd++y++d+v+g+++  + +    +++n+g +   s+++ ++l+++ + k+  i++       +  +v   +ad +k+k+l+g+k+k+
  MMETSP1061-20121228|6217_1  60 VLVTGGAGFIGSHVAEFLLDRGDDVVIIDEMNDYydvtIKESNLKLLQDSYpeEGRVKIYRGDICDRKLLETIFetENIKWVCHMAARAGVRPSIQDPFVYIHSNVNATTHLMELSHRHGIENFVFASSSSVYGGSKSTFFSEDEVVdHPVSPYAATKKTCELLAYTYHHLYNLKVTGLRFFTVYGPRGRPDMAPFKFTDRIYRGVEMQQFGDGSSSRDYTYISDIVDGVVRAIDRPYD-YQIFNLGKGAGTSLKEFINLVQKYVCKKAVIKVL----PDQPGDVPYTCADVTKAKQLLGYKSKV 359
                 89***********************98766554411114445566666655215679*************99862257889**********************************************************999988763689*************************************8876655567789******************************98887765.69**********************9999888653....3345789999999******99999876 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   3.3e-19   7.5e-17       5     172 ..      58     231 ..      55     240 .. 0.80
   2 !   26.5   0.0     3e-09   6.8e-07     268     341 ..     313     383 ..     293     393 .. 0.75

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 3.3e-19
   TIGR02622   5 kkvlvtGhtGfkGsWlslwLkelGaevaGysl.....dpetkpnlfellklakklkd....ssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenkewvwgyretdalG.GhDpYsaskaaaelvvasyrksf 172
                 kkvlvtG  Gf Gs ++ +L + G +v+ +       d++ k+++ +ll+ +  + +    + ++gdi d++ le+++e+ + + v h+aa + vr s +dP+  ++ nv  t +l+e  + +  ++  v   s  vY  ++++  + e++++     pY+a k ++el++ +y++ +
  MMETSP1061-20121228|6217_1  58 KKVLVTGGAGFIGSHVAEFLLDRGDDVVIIDEmndyyDVTIKESNLKLLQDS--YPEegrvKIYRGDICDRKLLETIFETENIKWVCHMAARAGVRPSIQDPFVYIHSNVNATTHLMELSHRHG-IENFVFASSSSVYGGSKST-FFSEDEVVDhPVSPYAATKKTCELLAYTYHHLY 231
                 8*************************98664311111233333333333322..2113343789******************************************************887766.899999*******987665.5888887762579****************9877 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 3e-09
   TIGR02622 268 velvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWykeaylkgeeve 341
                 +e++ +++++ ++kka i+     ++p +  +   d++kak+ lg+k++ s+e+ +++tveWyk++y+k+e+  
  MMETSP1061-20121228|6217_1 313 KEFI-NLVQKYVCKKAVIKVLP--DQPGDVPYTCADVTKAKQLLGYKSKVSFEDGIKKTVEWYKTSYAKEENKS 383
                 3333.44555556666666544..48999999999******************************999998654 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.1   1.1e-19   2.6e-17       1     336 [.      58     370 ..      58     375 .. 0.81

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 1.1e-19
   TIGR01472   1 kvalitGitGqdGsylaelllekgyevhGlirrsssfnterle...hlyeekhkeekalflhyGdltdsssllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkek.tpfnprspyaaaklyayyivvnyreayglfavnGilfnhesprrG.etfvtrkitravakialgleeklylGnldakrdwGyakdyveamwlmlqqdkpddyvi...atgettsvrefvevsfelvgitlewkdkgikevglikevgkvvveidkryfrptevdlllGdatkakeklgwkrevslkelvkemve 336
                 k+ l+tG +G  Gs++ae+ll++g +v  +      ++    e   +l ++   ee +++++ Gd++d + l  + e+ + + +  +aa++ v+ s + p   ++++   t +l+e  +  + ++   f  as+s +yG +k++  +e+    +p spyaa+k     ++  y   y+l  v+G+ f      rG  ++   k t    +i+ g e +  +G+  ++rd+ y  d v+ +      d+p dy i     g  ts++ef+++  ++v      k+          +   + v  d    +p +v +   d tkak+ lg+k +vs+++ +k+ ve
  MMETSP1061-20121228|6217_1  58 KKVLVTGGAGFIGSHVAEFLLDRGDDVVIIDEMNDYYDVTIKEsnlKLLQDSYPEEGRVKIYRGDICDRKLLETIFETENIKWVCHMAARAGVRPSIQDPFVYIHSNVNATTHLMELSHRHGIEN---FVFASSSSVYGGSKSTFFSEDeVVDHPVSPYAATKKTCELLAYTYHHLYNLK-VTGLRFFTVYGPRGrPDMAPFKFTD---RIYRGVE-MQQFGDGSSSRDYTYISDIVDGVVR--AIDRPYDYQIfnlGKGAGTSLKEFINLVQKYVC-----KK----------A--VIKVLPD----QPGDVPYTCADVTKAKQLLGYKSKVSFEDGIKKTVE 370
                 5789***********************9888777666543322122578999999999****************************************998888888888999999888877765...889***********998887615669************************97.5666665555555515677788886...6666654.556799***************9765..558899987622257899*******99888888.....22..........1..2233334....699999999999999999999999999999998876 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   4.5e-16     1e-13       2     129 ..      59     204 ..      58     235 .. 0.76
   2 !    7.4   0.0    0.0016      0.37     295     323 ..     345     374 ..     340     377 .. 0.85

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 4.5e-16
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrk......tsdrrnleeld........vEiveGdlkdeaslkkal..kGcealfHvAAdy..rlwakdpeelykanvegtravleaAleagvervvytssvatlgvkedgkeadet 129
                 kvlvtG++GF+Gs+v++ ll++G +v ++         t +++nl+ l+        v i +Gd+ d++ l++    + ++ + H+AA    r   +dp   +++nv+ t++++e  +++g+e  v++ss ++ g +++   ++++
  MMETSP1061-20121228|6217_1  59 KVLVTGGAGFIGSHVAEFLLDRGDDVVIIDEMndyydvTIKESNLKLLQdsypeegrVKIYRGDICDRKLLETIFetENIKWVCHMAARAgvRPSIQDPFVYIHSNVNATTHLMELSHRHGIENFVFASSSSVYGGSKSTFFSEDE 204
                 89************************9986541222224677888777433333344789***********99651167999*****986115568999999*******************************9977765444333 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0016
   TIGR03466 295 ssakAereLgyrqr.paeealkdaveWfra 323
                 + +kA++ Lgy+++ ++e+++k+ veW++ 
  MMETSP1061-20121228|6217_1 345 DVTKAKQLLGYKSKvSFEDGIKKTVEWYKT 374
                 779********975389**********986 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   6.2e-12   1.4e-09       1     226 [.      59     323 ..      59     334 .. 0.82
   2 ?   -0.1   0.0      0.39        88     156     197 ..     310     353 ..     300     394 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 6.2e-12
   TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs.............................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvgal.lvhiSTDYvFDGekkrpYreedet.nPlnvYgqsKlaGEvavraase....kalivRtswlygasggrnFvk.tmlrlakereelkvvadQigsP..Tyakdlaevlaaller.eargvyHlanegqvSwyefaqaifevl 226
                 ++l+tG++g +g++ +e l   g +vv +++                              + d+ d + le++++ ++ + v + aA   V  + +++ +  + N+ at++l ++++r+g+  +v+ S   v+ G+k++ ++e++++  P++ Y+++K + E+++  + +    k+  +R   +yg +g  + +     ++  ++ e++ + d   s   Ty +d+ + ++++++r   + ++ l     +S  ef + +++ +
  MMETSP1061-20121228|6217_1  59 KVLVTGGAGFIGSHVAEFLLDRGDDVVIIDEMndyydvtikesnlkllqdsypeegrvkiyRGDICDRKLLETIFETENIKWVCHMAARAGVRPSIQDPFVYIHSNVNATTHLMELSHRHGIEnFVFASSSSVYGGSKSTFFSEDEVVdHPVSPYAATKKTCELLAYTYHHlynlKVTGLRFFTVYGPRGRPDMAPfKFTDRIYRGVEMQQFGDGSSSRdyTYISDIVDGVVRAIDRpYDYQIFNLGKGAGTSLKEFINLVQKYV 323
                 79*******************999999888888****************************************************************************************963799******************99836*************999887766545666689999999888755554134555666777777777666643366667777777666665566677666666667666666666655 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.39
   TIGR01214 156 g..rnFvktmlrlakereelkvvadQig.sPTyakdlaevlaall 197
                 +  ++F++ + + + ++  +kv+ dQ g  P  ++d++++ ++ll
  MMETSP1061-20121228|6217_1 310 TslKEFINLVQKYVCKKAVIKVLPDQPGdVPYTCADVTKA-KQLL 353
                 2358999999999999999*******98357777777655.4444 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0     2e-11   4.5e-09       1     249 [.      60     331 ..      60     336 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 2e-11
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee...............aeee........alegvdavinLaGepiadkrwteerkkeileSRikttealvelikkakqkpkvlisasavgyYgeseekelteee..eeagddFlaklceeWEeaaqaaekl.gvrvvllRtgivLgekGG.alakllll...fklglggklGsGrqwlsWihleDlvklilfaleneevsGvvNataPepvrnkefakalakalhrpallpv 249
                 vl+tGg G+iG++++e l ++g++vvi+  ++     + kes  +  +                   +        ++e+++ v ++a +  +  r + +     ++S +++t+ l+el ++    ++ ++ as+ ++Yg s+++ + e+e  +++ + + a + +  E  a + ++l + +v+ lR+  v g++G   +a ++     ++   + ++G+G++   +  ++D+v+ +  a++++    ++N+     ++ kef++ + k + + a+++v
  MMETSP1061-20121228|6217_1  60 VLVTGGAGFIGSHVAEFLLDRGDDVVIIDEMNDYYDVTIKESNLKLLQDsypeegrvkiyrgdiC--DrklletifETENIKWVCHMAARAGV--RPSIQDPFVYIHSNVNATTHLMELSHRHG--IENFVFASSSSVYGGSKSTFFSEDEvvDHPVSPY-AATKKTCELLAYTYHHLyNLKVTGLRFFTVYGPRGRpDMAPFKFTdriYRGVEMQQFGDGSSSRDYTYISDIVDGVVRAIDRPYDYQIFNLGKGAGTSLKEFINLVQKYVCKKAVIKV 331
                 79***************************999987777766665555445655666666666552..044667777999*********99877..66888888999************988877..78899999999************99755555545.55667778877777664268***************4234444443111444556789**************************9999*****************99999888888774 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   6.2e-11   1.4e-08       5     125 ..      58     188 ..      54     303 .. 0.67

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 6.2e-11
   TIGR03589   5 ksilitGgtGsfGkkfikkllekykvkkiii.....ysrdelkqfe...lqqkfee.dklrffiGdvrdkerleral..edvdlvvhaaalkqvpaaeynPleciktnieGaenvidaaldkgvkkvvalst 125
                 k +l+tGg+G  G +  + ll++ +   +ii     y    +k ++   lq++++e  +++ + Gd+ d++ le+ +  e++  v h aa   v  +  +P+  i++n++ ++ +++ +  +g+++ v  s+
  MMETSP1061-20121228|6217_1  58 KKVLVTGGAGFIGSHVAEFLLDRGDDV-VIIdemndYYDVTIKESNlklLQDSYPEeGRVKIYRGDICDRKLLETIFetENIKWVCHMAARAGVRPSIQDPFVYIHSNVNATTHLMELSHRHGIENFVFASS 188
                 78*******************998654.4441111133333444431114455644589**************998732689******************************************99875443 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   4.1e-09   9.3e-07       1     197 [.      59     245 ..      59     330 .. 0.66

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 4.1e-09
   TIGR01746   1 tvlLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLrealrsyrleeeklaaerievvaGdlseprlGLseaewerLaeevdtivhngAlVnf...vqpYeeLraaNVegtvevlrlaasgkakpliyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdr.glpvtivRpGrilg 197
                 +vl+TG  Gf+G + +e Ll+r  +  v+ ++ + ++    +   +  + + l+++   + r+++++Gd+   +l     e    +e++  + h++A+  +   +q+       NV+ t  +++l+ ++ +  +++ S+ sv+    +s+   ++++ +  +p  +++Ya++K   Ell         l+vt +R   + g
  MMETSP1061-20121228|6217_1  59 KVLVTGGAGFIGSHVAEFLLDRGDD--VV-IIDEMND--YYDVTIKESNLKLLQDSYPEEGRVKIYRGDICDRKL----LETIFETENIKWVCHMAARAGVrpsIQDPFVYIHSNVNATTHLMELSHRHGIENFVFASSSSVYGG-SKST--FFSEDEVVDHP--VSPYAATKKTCELLAYTYHHLyNLKVTGLRFFTVYG 245
                 69********************844..33.3444444..3333344444445555444448********877765....33444579**********98752223444445689*****************************95.4454..45555555555..58***********99888888788888777776666 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     9e-06     0.002     415     488 ..      58     137 ..      50     157 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 9e-06
   TIGR02632 415 rvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaae.....lvdkfG.adkavalkldvtdeeavkaafaeva 488
                 + +lvtGga+ iG+ va  l d+G  vv++d  ++  + + +e     l+d +  ++++   + d+ d++ +++ f+   
  MMETSP1061-20121228|6217_1  58 KKVLVTGGAGFIGSHVAEFLLDRGDDVVIIDEMNDYYDVTIKEsnlklLQDSYPeEGRVKIYRGDICDRKLLETIFETEN 137
                 6789***************************8776666555541111144555413455556778888888888887655 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     2e-05    0.0046       2      69 ..      59     134 ..      58     164 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2e-05
   TIGR02415   2 valvtGaaqGiGkaiaerLakdGfavavadln....eetaketakelkek....gtkavavkldvsdkseveeave 69 
                   lvtG+a  iG+ +ae L + G +v++ d      + t+ke   +l ++    +++ ++++ d+ d++ +e++ e
  MMETSP1061-20121228|6217_1  59 KVLVTGGAGFIGSHVAEFLLDRGDDVVIIDEMndyyDVTIKESNLKLLQDsypeEGRVKIYRGDICDRKLLETIFE 134
                 579************************9985424445666666666655412225577888888888887766555 PP

>> TIGR02421  QEGLA: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.9e-05     0.011     280     348 ..     251     327 ..     235     339 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.9e-05
   TIGR02421 280 aaeafsitqRvfRG.......gG.ftKDalYLrGfve.vlnairkavkllelLfvGKlaledlsvlkelvergllepp 348
                 ++  f+ t R++RG        G  ++D+ Y+   v+ v+ ai++   + +++ +GK a  +l+ + +lv++ + +++
  MMETSP1061-20121228|6217_1 251 DMAPFKFTDRIYRGvemqqfgDGsSSRDYTYISDIVDgVVRAIDRPY-DYQIFNLGKGAGTSLKEFINLVQKYVCKKA 327
                 6778***************98556*********99975778888886.9*****************999999887776 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00013     0.029       2      38 ..      58      94 ..      57     127 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00013
   TIGR01963  2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaa 38
                k +lvtG a+ ig ++a+ l   G +vv+ d  ++  
  MMETSP1061-20121228|6217_1 58 KKVLVTGGAGFIGSHVAEFLLDRGDDVVIIDEMNDYY 94
                679************************9988766554 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0    0.0023      0.52       5      29 ..      65      89 ..      60      93 .. 0.85
   2 ?    2.4   0.0     0.063        14     297     333 ..     145     180 ..     137     181 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0023
   TIGR02352  5 GgGviGlsvAveLakrghkvtllek 29
                G+G iG+ vA  L++rg +v ++++
  MMETSP1061-20121228|6217_1 65 GAGFIGSHVAEFLLDRGDDVVIIDE 89
                78******************99986 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.063
   TIGR02352 297 etwaGlRPatpDnlPllgeheederlliatGhyRnGi 333
                  ++aG+RP  +D   +++ + ++  + ++    R+Gi
  MMETSP1061-20121228|6217_1 145 AARAGVRPSIQDPFVYIHSNVNAT-THLMELSHRHGI 180
                 679*********999999877777.666666668887 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00032     0.072       2     115 ..      60     196 ..      59     200 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00032
   TIGR03649   2 iLllgGtGkvasriarllaaasvpllvasrssssaaledekavkF....dwldedtyenvfssddemekeelisavylvappvl......................dlasllikFidvavkkgvkrfvllsasaiekGgp 115
                 +L++gG G ++s++a++l + + ++++    ++  +  + k+ +     d + e+   +++    ++ + +l+++++ ++                           +++++++ +++  ++g++ fv+ s+s++  G +
  MMETSP1061-20121228|6217_1  60 VLVTGGAGFIGSHVAEFLLDRGDDVVIIDEMNDY-YDVTIKESNLkllqDSYPEEGRVKIY--RGDICDRKLLETIFETENIKWvchmaaragvrpsiqdpfvyihSNVNATTHLMELSHRHGIENFVFASSSSVYGGSK 196
                 8*****************9999999988877755.33333444440001444444444444..44455557888988877665578888899999999999999999999999999999999*********999988765 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00026     0.059       1      35 [.      60      94 ..      60     150 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00026
   TIGR01830  1 alvtGasrgiGkaiakklakegakvviterskeek 35
                +lvtG++  iG+ +a+ l ++g +vvi ++ ++  
  MMETSP1061-20121228|6217_1 60 VLVTGGAGFIGSHVAEFLLDRGDDVVIIDEMNDYY 94
                69************************997765432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.30
# Mc/sec: 1764.25
//
Query:       MMETSP1061-20121228|6222_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-48  162.2   0.0    3.2e-48  162.0   0.0    1.0  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    1.8e-12   45.1   0.0    2.2e-12   44.8   0.0    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.0   0.0   1.6e-51   3.2e-48       2     229 ..       6     236 ..       5     237 .. 0.97

  Alignments for each domain:
  == domain 1    score: 162.0 bits;  conditional E-value: 1.6e-51
   TIGR03633   2 aYDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeyke..dlsldeaielalkalakaleeelkaeevevavveveekkfrklskeevekll 229
                  YD  i +fsP+Grlyq+eY ++a   g t v i+ k++v ++++k++ ++++e++s+  +fki ++vg++ +G +aD++ +++rar ea +  +  + p+ v+vl++++adl q  tq    rP     l+ Gvdd+ ++++f+ d +G++l + a+a G ++++++++lek+ ke  +++ d+ i+ a++ l ++l +++k +e+ev+++e    +f+ l+++e+e++l
  MMETSP1061-20121228|6222_1   6 NYDHHISIFSPQGRLYQMEYCFKAANSGLTGVAIRGKDSVCVVTQKKVPDRMMEPSSVTHLFKITQKVGCCVTGPMADSKSMVQRARYEAGKWAFDNGYPMPVSVLSRRMADLAQVNTQAASSRPLACIGLFVGVDDEkGPQVFKVDCAGHYLPFFAAASGPKEQEAMNFLEKRAKEmkEFDKDQVIRTAITCLGHVLGSDFKGTEIEVGCIEGTRGRFEVLAEDEIEEHL 236
                 6*******************************************************************************************************************************99*****98768*********************************987633788899*******************************************987 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   1.1e-15   2.2e-12       2     162 ..      34     197 ..      33     221 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 1.1e-15
   TIGR03634   2 tTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllkss....kflpflvqllvgGvde.egpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaik 162
                  T v i+ kd v + ++k++  +++++  +v+ +fki++k++  ++G ++d +s+v+  + ea    + ++ +++v+ l++ ++ l + +       p +   l+ Gvd+ +gp+++++D +G ++    +a G   + a+  Le++ + +++  +  +++ +ai+
  MMETSP1061-20121228|6222_1  34 LTGVAIRGKDSVCVVTQKKV-PDRMMEPSSVTHLFKITQKVGCCVTGPMADSKSMVQRARYEAGKWAFDNGYPMPVSVLSRRMADLAQVNtqaaSSRPLACIGLFVGVDDeKGPQVFKVDCAGHYLPFFAAASGPKEQEAMNFLEKRAK-EMKEFDKDQVIRTAIT 197
                 58999***********9997.599****************************************************9999998888765522225678888888889987578*************988889999999*******9965.5555555556555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1469.88
//
Query:       MMETSP1061-20121228|6216_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 2007.33
//
Query:       MMETSP1061-20121228|6225_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 1126.98
//
Query:       MMETSP1061-20121228|6223_1  [L=808]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 2734.54
//
Query:       MMETSP1061-20121228|6227_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0077   13.3   0.0      0.011   12.7   0.0    1.2  1  TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase
  ------ inclusion threshold ------
      0.013   12.5   0.0      0.018   12.1   0.0    1.3  1  TIGR01921 DAP-DH: diaminopimelate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01850  argC: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   5.5e-06     0.011       3      85 ..       8      90 ..       6      99 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5.5e-06
   TIGR01850  3 vaivGasGYtGaeLlrllakHpevevtklvssreagkklsevhphlkglvd.lkleeleeeeileeadvvflAlphgvsaelvp 85
                +ai+G+sG  G+ +l+ + + p++e + + +sr+a + l+++ p+  ++     l+++ ++ +l+  +v f+ l hg s +  +
  MMETSP1061-20121228|6227_1  8 AAILGGSGSVGKCVLESILADPRCEQV-ILVSRRALDDLKSIDPQRITVQVcDPLDDVGTKVNLTGTNVAFCTLGHGSSRKSTK 90
                58***********************99.8888888999999999765554457888888888899*************998765 PP

>> TIGR01921  DAP-DH: diaminopimelate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   8.7e-06     0.018       4      61 ..       6      64 ..       3     124 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.7e-06
   TIGR01921  4 iraaiv.GyGnlGksvekaisqaPdlelvgvfsrrdaetldeelavyavaeaekeledv 61
                  aai+ G G +Gk v++ i ++P  e v ++srr  + l++  +    ++    l+dv
  MMETSP1061-20121228|6227_1  6 FIAAILgGSGSVGKCVLESILADPRCEQVILVSRRALDDLKSIDPQRITVQVCDPLDDV 64
                456666268**************************988777554444444444445554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 1625.55
//
Query:       MMETSP1061-20121228|6229_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.2    2.6  10.0        6.1    2.6   6.9    1.0  1  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type


Domain annotation for each model (and alignments):
>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   6.9    0.0015       6.1     277     321 ..       5      49 ..       1      51 [] 0.93

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0015
   TIGR01517 277 lgsavllllvlvlryviekivedteekaktlldlfiiavtivvva 321
                 + +av+ ++v+    v++ +v+  +  +  ++d f+ av   vva
  MMETSP1061-20121228|6229_1   5 FAAAVVAFVVVAFAVVVDAFVVAFAAVVDAFVDAFAAAVDAFVVA 49 
                 6799****************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       352  (0.0858118); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|6233_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 608.62
//
Query:       MMETSP1061-20121228|6232_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1684.18
//
Query:       MMETSP1061-20121228|6230_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2760.77
//
Query:       MMETSP1061-20121228|6238_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1194.50
//
Query:       MMETSP1061-20121228|6239_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   11.7   0.0      0.078   10.9   0.0    1.4  1  TIGR01495 ETRAMP: early transcribed membrane protein (ETRAMP) family


Domain annotation for each model (and alignments):
>> TIGR01495  ETRAMP: early transcribed membrane protein (ETRAMP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.9e-05     0.078      21      64 ..      41      88 ..      23     104 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.9e-05
   TIGR01495 21 pglcnngkvekkgki....lkklekaekkkrnkklilySsiasglall 64
                ++   n++++  ++      +k e + ++ r++++i  Ss+as l++ 
  MMETSP1061-20121228|6239_1 41 SNSNSNSNSNTNDNAgtdgQRKQERERERERRQQIIQSSSLASSLSVF 88
                4444443333333335666777777777889************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 771.94
//
Query:       MMETSP1061-20121228|6236_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 839.93
//
Query:       MMETSP1061-20121228|6235_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 783.14
//
Query:       MMETSP1061-20121228|6241_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.62
# Mc/sec: 845.16
//
Query:       MMETSP1061-20121228|6237_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.24
# Mc/sec: 3140.24
//
Query:       MMETSP1061-20121228|6242_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.11s 00:00:00.49 Elapsed: 00:00:00.49
# Mc/sec: 1899.03
//
Query:       MMETSP1061-20121228|6244_1  [L=742]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.74
# Mc/sec: 1323.46
//
Query:       MMETSP1061-20121228|6251_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   13.3   0.0     0.0021   13.3   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit


Domain annotation for each model (and alignments):
>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.2e-07    0.0021     657     685 ..       9      37 ..       3      78 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.2e-07
   TIGR03315 657 kedktklklGkrvvvvGgGntamdaaraa 685
                  ++k++ k  + +vvvG Gn+a+d+ar  
  MMETSP1061-20121228|6251_1   9 SNSKSEPKPNQSIVVVGHGNVALDCARIL 37 
                 455566677889***************74 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.33
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|6246_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-09   34.1   0.3    0.00085   16.2   0.1    3.6  4  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
  ------ inclusion threshold ------
      0.038   12.2   0.0        3.9    5.7   0.1    2.6  2  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.016        33      26      65 ..      41      82 ..      28      85 .. 0.67
   2 ?   -1.4   0.0     0.089   1.8e+02      70      81 ..     117     128 ..     112     157 .. 0.87
   3 !   16.2   0.1   4.2e-07   0.00085     355     387 ..     620     652 ..     613     666 .. 0.78
   4 !   13.4   0.0   2.9e-06     0.006     436     479 ..     651     694 ..     643     729 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.016
   TIGR01536 26 tlahRGPDaegvwkdekeenailghrRLaiidlseg..aQPl 65
                 l++RGPDa+gv +++++ ++  + +  ++  + +   +QP+
  MMETSP1061-20121228|6246_1 41 NLQRRGPDAQGVVSSVSHPECHEIRCAASVLQMRSElkTQPV 82
                5889*******9888644444444555555444333336665 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.089
   TIGR01536  70 evvivfnGEIYN 81 
                 ++ +++nGEIY 
  MMETSP1061-20121228|6246_1 117 RAYLCWNGEIYQ 128
                 6789*******6 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 4.2e-07
   TIGR01536 355 vkVvLsGeGaDElfgGYeyfreakaeealelpe 387
                  +V+L G GaDEl+gGY ++r+a+ +  ++  +
  MMETSP1061-20121228|6246_1 620 PRVLLLGMGADELMGGYGRHRKAHERGGWKELQ 652
                 58*********************9999998333 PP

  == domain 4    score: 13.4 bits;  conditional E-value: 2.9e-06
   TIGR01536 436 leellrldlelllsdllrakDrvsmahslEvRvPflDkelvela 479
                 l++ l  d ++l +++  ++Dr+ + h+ E+R+PflD ++v++ 
  MMETSP1061-20121228|6246_1 651 LQSELTMDQNRLWERNCGRDDRLCSDHGREARFPFLDPHVVRFL 694
                 5555667777888899999******************9999875 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1    0.0019       3.9      58      92 ..      81     115 ..      67     122 .. 0.49
   2 ?    3.2   0.0     0.012        24      45      93 ..     564     612 ..     547     626 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0019
   TIGR03685  58 aaapvaaaaaaaaaaeaaeeekeeeeeeeeekeee 92 
                  +a v+a a++  +++++++++++++++++e++++
  MMETSP1061-20121228|6246_1  81 PVAFVPAWAGSGDNKNDDDDDNDNDDDDDDEHGDD 115
                 34444444444444444444443333333333333 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.012
   TIGR03685  45 Ledvdieeaiekaaaapvaaaaaaaaaaeaaeeekeeeeeeeeekeeee 93 
                 + d++i  a+  a+  ++aa a a+ ++++ ++++ + + + + +++++
  MMETSP1061-20121228|6246_1 564 VMDINIATALWFASRGKAAAHAIATCHEHDGNNSDSNGNGNGNSNGNSD 612
                 56999999**999999999999998888877777666653333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.11s 00:00:00.46 Elapsed: 00:00:00.49
# Mc/sec: 2066.03
//
Query:       MMETSP1061-20121228|6253_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.43
# Mc/sec: 236.35
//
Query:       MMETSP1061-20121228|6255_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 1214.30
//
Query:       MMETSP1061-20121228|6252_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.9e-141  466.5   1.1   1.1e-140  466.3   0.8    1.0  1  TIGR00874 talAB: transaldolase
    2.3e-27   93.7   0.3    1.2e-19   68.5   0.2    3.1  3  TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase
    1.5e-13   48.6   0.3    5.1e-13   46.9   0.2    1.8  1  TIGR00876 tal_mycobact: transaldolase
     0.0004   18.0   0.4       0.31    8.5   0.0    2.8  3  TIGR02134 transald_staph: transaldolase


Domain annotation for each model (and alignments):
>> TIGR00874  talAB: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  466.3   0.8  1.1e-143  1.1e-140       2     317 .]       4     317 ..       3     317 .. 0.97

  Alignments for each domain:
  == domain 1    score: 466.3 bits;  conditional E-value: 1.1e-143
   TIGR00874   2 kldqlkkltvvvadtGdieaikkyepqdattnPslilkaaklpkyaklideavaygkkqskddaqqveaaldklavnlgleilkivPGrvstevdarlsfdteatvekarkliklyekaGvdkerilikiastWeGiraaeelekeGiacnltllfslaqaiacaeakvtlisPfvGrildwykaatgkke.....ysaeedPGvasvkkiynyykkfgyetevmgasfrnieeilelaGvdlltispklldelkeseepverkldpesakkvdakpieldesefrfelnedamateklaeGirkfaadlekleklleekl 317
                 k++ql + t++vadtGd++ai+k +pqdattnPsli+kaa +p+y+k+id+a++y+k         ++ a+dk+ vn+g+ei kivPG vstevdarlsfdteat+ekar+li+ly++aG+dk+rilikia+tWeGiraae+lekeGi cnltl+fs aqaiacaea+vtlisPfvGri+d+yka++  k+     +s+ edPGv+sv++iynyykk+gy+t+vmgasfrn+eeilel+G+d+ltisp l+++lke+e +verkld++ a ++++ +i +de +fr++   +amatekla Gir faad+eklek+++ek+
  MMETSP1061-20121228|6252_1   4 KYTQLLEHTIIVADTGDVDAIAKIKPQDATTNPSLITKAAVMPEYQKFIDDAIEYAKG-------DLSLAMDKVSVNFGTEITKIVPGYVSTEVDARLSFDTEATIEKARQLISLYKEAGIDKSRILIKIAATWEGIRAAEVLEKEGITCNLTLIFSKAQAIACAEAGVTLISPFVGRIMDFYKAEELGKDpafagFSPGEDPGVVSVTEIYNYYKKHGYNTIVMGASFRNTEEILELCGCDRLTISPGLVEKLKEEEGTVERKLDAKVALEQEIPKISVDEKTFRMMSCMNAMATEKLAAGIRGFAADIEKLEKIISEKM 317
                 678999*************************************************985.......5899*******************************************************************************************************************9875443233338999**********************************************************************************************************************996 PP

>> TIGR00875  fsa_talC_mipB: fructose-6-phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0014       1.5       7      55 ..      18      64 ..      12      74 .. 0.61
   2 !   68.5   0.2   1.1e-22   1.2e-19      44     135 ..      76     177 ..      67     184 .. 0.88
   3 !   15.6   0.0   1.8e-06    0.0018     140     194 ..     200     252 ..     193     264 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0014
   TIGR00875  7 tanveeikklaelgilaGvttnPslvakek..rsfkevlkeilevveGsvs 55
                t +v+ i   a++ +    ttnPsl++k +   ++++ + + +e  +G +s
  MMETSP1061-20121228|6252_1 18 TGDVDAI---AKIKPQ-DATTNPSLITKAAvmPEYQKFIDDAIEYAKGDLS 64
                4444444...444443.479*******988323444455555555566665 PP

  == domain 2    score: 68.5 bits;  conditional E-value: 1.1e-22
   TIGR00875  44 keilevveGsvsaev...isldaegmveeakelaklaen.......ivvkiPvtseGlkavkilkkeGiktnvtlvfsaaqallaakaGakyvsPfvgrldd 135
                  ei+++v G vs ev   +s d+e  +e a++l  l ++       i +ki  t eG++a ++l+keGi+ n tl+fs aqa+  a aG + +sPfvgr+ d
  MMETSP1061-20121228|6252_1  76 TEITKIVPGYVSTEVdarLSFDTEATIEKARQLISLYKEagidksrILIKIAATWEGIRAAEVLEKEGITCNLTLIFSKAQAIACAEAGVTLISPFVGRIMD 177
                 59***********98777999************88754222223339****************************************************976 PP

  == domain 3    score: 15.6 bits;  conditional E-value: 1.8e-06
   TIGR00875 140 GlklieevkkifeiyeldtevivasvrhPrhvleaaliGadiitlpldvaeqlln 194
                 G+  + e+ + ++ ++ +t v+ as+r+  ++le  l G+d  t+ + ++e+l +
  MMETSP1061-20121228|6252_1 200 GVVSVTEIYNYYKKHGYNTIVMGASFRNTEEILE--LCGCDRLTISPGLVEKLKE 252
                 88899****************************9..78********999999865 PP

>> TIGR00876  tal_mycobact: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.2     5e-16   5.1e-13      90     166 ..      80     161 ..      18     169 .. 0.81

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 5e-16
   TIGR00876  90 dgvdGrvslevdPrledeaeksideake...lfki..ldrPnllikvPaskaGlevvsallaesisvnvtlvfsvkrareva 166
                   v G+vs evd rl  ++e +i++a++   l+k   +d+  +lik+ a+  G+ +   l +e+i+ n+tl+fs  +a   a
  MMETSP1061-20121228|6252_1  80 KIVPGYVSTEVDARLSFDTEATIEKARQlisLYKEagIDKSRILIKIAATWEGIRAAEVLEKEGITCNLTLIFSKAQAIACA 161
                 4678********************99762225774558************************************88776555 PP

>> TIGR02134  transald_staph: transaldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0003      0.31      29      54 ..      31      57 ..      11      73 .. 0.76
   2 !    6.6   0.0    0.0012       1.2     102     150 ..     133     177 ..      72     189 .. 0.67
   3 ?   -2.1   0.0      0.52   5.4e+02     177     207 ..     223     251 ..     197     264 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0003
   TIGR02134 29 GfttnpslmkkaGis.dykafakeala 54
                  ttnpsl+ ka ++ +y+ f ++a++
  MMETSP1061-20121228|6252_1 31 DATTNPSLITKAAVMpEYQKFIDDAIE 57
                469********998648*****99986 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0012
   TIGR02134 102 iplikklsadgiklnvtavftieqvkkvvealtegvpaivsvfaGriad 150
                 i   + l ++gi+ n+t +f+  q  +     +e   +++s f Gri d
  MMETSP1061-20121228|6252_1 133 IRAAEVLEKEGITCNLTLIFSKAQAIAC----AEAGVTLISPFVGRIMD 177
                 4445668899**********99887654....45566899*******98 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.52
   TIGR02134 177 asprelfniiqadeiGvdiitvaadvvaklp 207
                 as r++ +i+  +  G+d +t++  +v+kl+
  MMETSP1061-20121228|6252_1 223 ASFRNTEEIL--ELCGCDRLTISPGLVEKLK 251
                 5666666665..3579999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.47
# Mc/sec: 921.12
//
Query:       MMETSP1061-20121228|6257_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   15.5   5.5      0.012   13.8   3.8    1.9  1  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   3.8     3e-06     0.012      13      40 ..     131     159 ..     123     160 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3e-06
   TIGR03892  13 Dyad..laevgassgatstsssSsCsTcsc 40 
                 D ad  + e++a +g++s+sssSs+s++s+
  MMETSP1061-20121228|6257_1 131 DGADedEVELDA-DGNASSSSSSSSSSSSA 159
                 555633555555.88888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.32
# Mc/sec: 981.67
//
Query:       MMETSP1061-20121228|6256_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1383.02
//
Query:       MMETSP1061-20121228|6259_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1900.64
//
Query:       MMETSP1061-20121228|6264_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.27
# Mc/sec: 381.30
//
Query:       MMETSP1061-20121228|6260_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   14.2   0.8       0.01   11.9   0.7    1.8  2  TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase
  ------ inclusion threshold ------
       0.14    8.9  10.0        2.2    4.9   7.0    2.1  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02402  trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0     0.029        59     158     190 ..      42      74 ..      38      81 .. 0.75
   2 !   11.9   0.7   5.1e-06      0.01     411     544 ..     109     245 ..     105     246 .. 0.64

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.029
   TIGR02402 158 GgPeelkalvdaaHklglaVllDvVyNHlGPeG 190
                 G+P+ ++   ++  + + +V++D+V   lGP G
  MMETSP1061-20121228|6260_1  42 GKPNSFQGTGQSLGGSKPGVVIDIVLEELGPLG 74 
                 5666666666666666779************98 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 5.1e-06
   TIGR02402 411 llfmGeeygattPflfFtdhsdpelaeavregRkkefaefgfaeeevpdPqdeetfarsklkwkeaeseeheellelyrella...lRrelivllkaeaeeleaaadee..krvvavrleleegelelavnlseesvev 544
                 l f G    ++ P+  F d ++++ +    e R+ e +++g a  +     d+e+ +++ +  +ea++++h++ +++++++ +   l++++++ ++++a  ++++ + +  +   a+    ++ge  la++l+ ++ ev
  MMETSP1061-20121228|6260_1 109 LCFAGSRGQEEIPYKMFLDLAKSQQRPIHLEARRFESKSLGAA-GNKAGSADAEARRKAMIAAAEAREKKHKSQTKTIKHVTKstlLKQQQQQQQQQQAPLTQEQLQPQteASRQAI-EAAKQGEADLAAQLGYNPYEV 245
                 6789999999************9999999*********99975.4445556666677777766666666666655555544332214444444444444333333332210222222.345788999999998887765 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   7.0    0.0011       2.2     256     389 ..      82     211 ..      74     261 .. 0.58

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0011
   TIGR02037 256 ekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkk.vklkilRkgkekeikvtlkeaeeekasseksekkellglsvadlseeaakkkkskeekkgvvvtkvkkkspaakaglkkg 389
                 +++  a+v++v+ g  Ae+aGl++GDv+  + g + ++    +  +  +k  ++ ++l+  R  ++k++    ++a +++a+++   k+++++++ ++ ++++++ k+ k+++k  + ++++++++ ++a l ++
  MMETSP1061-20121228|6260_1  82 NNSGSAIVNAVVAGTQAERAGLQRGDVLC-FAGSRGQEEIPYKMFLDLAKSQQRpIHLEARR-FESKSLGAAGNKAGSADAEAR--RKAMIAAAEAREKKHKSQT-KTIKHVTKSTLLKQQQQQQQQQQAPLTQE 211
                 456789********************976.55555555544444444444443324444444.344444444332222222222..3333333333333333322.34445555555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       516  (0.125792); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1270.78
//
Query:       MMETSP1061-20121228|6265_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1923.84
//
Query:       MMETSP1061-20121228|6254_1  [L=994]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-15   54.7   0.1    7.2e-15   53.0   0.0    1.7  1  TIGR03614 RutB: pyrimidine utilization protein B


Domain annotation for each model (and alignments):
>> TIGR03614  RutB: pyrimidine utilization protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   1.8e-18   7.2e-15      10     173 ..      23     182 ..      16     223 .. 0.83

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 1.8e-18
   TIGR03614  10 aldpeetalivvdmqnayatkggyldlagfdvsaakkvienikkaveaaraagikviyfqn..gwdedyveaggpgspnfhksnalktmrkrpelqgkllakgtwdyelvdeltpqpgdivl.ektrysgffntaldsvlrargirnlvfvgiatnvcvestlrdgf 173
                   + ++ta++++d+qn +  kgg l     +  ++++v++n+ k ve ar  g  +iy       + ++ +     s +f++ n +         q  l++ gtw+ e++ e++p ++di+l +++ +s f+ t+l s l+   i ++  +g  t+vcv  t  d+ 
  MMETSP1061-20121228|6254_1  23 VAENNRTAILLLDFQNEFGKKGGKLHNDVVETMHSTGVLRNVPKLVEHARKMGALIIYSPVviSAEGKFNDDMVDYSSDFFHGNDF-------SQQIGLFTEGTWNCEIISEVQPLNDDIILtDRNDFSAFMGTKLLSCLKDNNINHFFVTGFLTDVCVYQTAEDAT 182
                 557789****************************************************7541134445556666667777777765.......346789********************99835789***********************************99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.45
# Mc/sec: 2915.49
//
Query:       MMETSP1061-20121228|6267_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 430.40
//
Query:       MMETSP1061-20121228|6258_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-17   61.0   2.2    1.7e-17   61.0   1.5    2.1  2  TIGR00012 L29: ribosomal protein L29


Domain annotation for each model (and alignments):
>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   1.5   4.2e-21   1.7e-17       1      55 [.       6      61 ..       6      62 .. 0.98
   2 ?    1.2   0.1      0.02        80       3      19 ..      91     107 ..      80     113 .. 0.81

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 4.2e-21
   TIGR00012  1 elrekskeELakklkelKkeLfeLRfqkatgqle.kphrIrqvRrdIARllTvlre 55
                elr++sk+EL++kl el+keL eL + k+t +++ k ++I+ vR+ IAR+lTv ++
  MMETSP1061-20121228|6258_1  6 ELRDLSKDELLSKLTELRKELSELHVAKVTDGAAsKIAKIKSVRKSIARVLTVHNQ 61
                8****************************************************998 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.02
   TIGR00012   3 rekskeELakklkelKk 19 
                 r+++k+E+ +k  + K+
  MMETSP1061-20121228|6258_1  91 RALTKAERGQKTAKAKR 107
                 77888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 725.94
//
Query:       MMETSP1061-20121228|6268_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0089   13.0   0.0       0.22    8.4   0.0    2.3  2  TIGR03069 PS_II_S4: photosystem II S4 domain protein
  ------ inclusion threshold ------
      0.014   12.5   0.0      0.025   11.7   0.0    1.3  1  TIGR03961 rSAM_PTO1314: archaeal radical SAM protein, PTO1314 family


Domain annotation for each model (and alignments):
>> TIGR03069  PS_II_S4: photosystem II S4 domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00011      0.22      11      85 ..     299     373 ..     287     397 .. 0.83
   2 ?    1.9   0.0     0.011        22      87     105 ..     546     564 ..     528     577 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00011
   TIGR03069  11 eskeeleellelaeqalrtwevvwsdFlsaplveEilkrlekladlkllaeGGypeaeRqrlaiaredeeleedq 85 
                  ++ ++++l++ + + +++   ++s   +++ ve ++  ++ l+d +l++ G  p++ R  + i+r+  ++++ +
  MMETSP1061-20121228|6268_1 299 AYHRTTQTLIQPTTEDYNHVFHAMSLSKNPKTVEHAQGLFKALNDDALVTGGADPQSYRYMIGIWRNSRSPNKVA 373
                 3566889999999999999999999999**************************************999877655 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.011
   TIGR03069  87 pikalkieGnFlFdpashe 105
                  +  l+i+GnF F +a  e
  MMETSP1061-20121228|6268_1 546 KVMPLSIHGNFTFTKAAAE 564
                 57789********998754 PP

>> TIGR03961  rSAM_PTO1314: archaeal radical SAM protein, PTO1314 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.2e-05     0.025      85     166 ..     480     561 ..     457     574 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.2e-05
   TIGR03961  85 eeileesykrfytslvtngwllkdrvksiseyldylfvsidgieevhdklrgipgsferavegikeakrylpvsls..ftitke 166
                 e++le+ ++r     v n  ll++  +  s +l   +v    i    + ++ +p s+ + veg +e k+ +p s+   ft tk 
  MMETSP1061-20121228|6268_1 480 ENVLENIFRRACEEGVVNPSLLEHFKSAASTHLYAKMVVSKSIP--TEDIKIVPESWTKNVEGYREGKKVMPLSIHgnFTFTKA 561
                 67788888888888888888888777777777766665555554..345788**********************9622666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.18s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1930.34
//
Query:       MMETSP1061-20121228|6272_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 505.96
//
Query:       MMETSP1061-20121228|6271_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.38
# Mc/sec: 552.27
//
Query:       MMETSP1061-20121228|6270_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.20s 00:00:00.37 Elapsed: 00:00:00.41
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|6275_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 374.85
//
Query:       MMETSP1061-20121228|6274_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 2494.26
//
Query:       MMETSP1061-20121228|6277_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   19.2   0.0    0.00033   18.6   0.0    1.3  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase
     0.0017   15.9   0.1     0.0068   14.0   0.0    1.9  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family


Domain annotation for each model (and alignments):
>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.6e-07   0.00033       6     135 ..     123     255 ..     119     283 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.6e-07
   TIGR02173   6 sGpPGsGkttvakilaekl.slklisaGkirelaekkgl.dlaeskkaeeekeiDkkiDrkikeia....ekeknvvlesrlagWllkeyaDvkiylkaslevraeriakrenksltealkeiiereesekrryke 135
                  G  GsGk++v  +la+++ s+k++ +  i e a k+ + ++ es+  e  ++++ ++  +++ ++    ++ + +v   +   W +  ++ + ++l+   ev  +ri    +++l ++ + +++  ++ + r  +
  MMETSP1061-20121228|6277_1 123 VGMMGSGKSSVGDKLARRMgSYKFLDTDGIIEKATKMTInEIFESEGEEGFRDVESQVLDTVHSYVrcviSTGGGLVCKPK--NWGK-LQTGIVVWLDVAPEVILKRIEGNTDRPLLKTEDPLQTLRDLLNERESK 255
                 6899************998569***99999999999998458899999888898888777766665111134455555444..5655.3689****************9888887777766665544444444444 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.3e-06    0.0068       3      35 ..     122     155 ..     120     166 .. 0.86
   2 ?   -1.2   0.0      0.16   3.3e+02      99     114 ..     214     229 ..     209     277 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.3e-06
   TIGR01313   3 lmGvaGsGkstiakelakklg.akfieGDdlhpk 35 
                 l+G+ GsGks+++ +la+++g  kf++ D +  k
  MMETSP1061-20121228|6277_1 122 LVGMMGSGKSSVGDKLARRMGsYKFLDTDGIIEK 155
                 89******************989****9987554 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.16
   TIGR01313  99 iyLeaskevilkRlks 114
                 ++L+   evilkR++ 
  MMETSP1061-20121228|6277_1 214 VWLDVAPEVILKRIEG 229
                 7788888888887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      219  (0.0533886); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1073.28
//
Query:       MMETSP1061-20121228|6281_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 197.98
//
Query:       MMETSP1061-20121228|6279_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 1060.80
//
Query:       MMETSP1061-20121228|6282_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 389.97
//
Query:       MMETSP1061-20121228|6283_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1061-20121228|6278_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-05   19.7   0.0    0.00015   18.9   0.0    1.4  1  TIGR01746 Thioester-redct: thioester reductase domain
     0.0018   15.7   0.0     0.0031   14.9   0.0    1.2  1  TIGR00036 dapB: dihydrodipicolinate reductase
     0.0058   13.4   0.0          1    6.0   0.0    2.2  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
      0.007   11.5   0.0     0.0093   11.1   0.0    1.1  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.5e-07   0.00015       1      37 [.     104     141 ..     104     177 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.5e-07
   TIGR01746   1 tvlLTGAtGfLGaylleeLlrrs.teakviClVRakse 37 
                 +++++GAtG +G++ +++L++ + ++ +++++VR+ ++
  MMETSP1061-20121228|6278_1 104 KIVVLGATGRIGRHVVRQLMEMRdVDMEIVAFVRSFDK 141
                 589*****************99989*********8765 PP

>> TIGR00036  dapB: dihydrodipicolinate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     3e-06    0.0031       3      31 ..     104     132 ..     103     151 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3e-06
   TIGR00036   3 kvavaGaaGrmGrevikavkeaedlelva 31 
                 k++v Ga+Gr+Gr+v++++ e +d+++  
  MMETSP1061-20121228|6278_1 104 KIVVLGATGRIGRHVVRQLMEMRDVDMEI 132
                 89*****************9997766532 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0   0.00099         1       3      23 ..     105     125 ..     103     144 .. 0.86
   2 !    5.1   0.0    0.0018       1.9      71     115 ..     258     302 ..     234     315 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00099
   TIGR03466   3 vlvtGatGFvGsavvrlllee 23 
                  +v GatG +G +vvr+l+e+
  MMETSP1061-20121228|6278_1 105 IVVLGATGRIGRHVVRQLMEM 125
                 6799**************975 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0018
   TIGR03466  71 vAAdyrlwakdpeelykanvegtravleaAleagvervvytssva 115
                 + Ad + w kd ++ y  n+ +tr+ l  A +++++r    ++va
  MMETSP1061-20121228|6278_1 258 LKADVSTWCKDGRHPYYVNYASTRKALGYAEREQLRREATVATVA 302
                 579*******************************99976666665 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   9.1e-06    0.0093     969    1013 ..      99     142 ..      82     174 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9.1e-06
   TIGR03443  969 aeeevtvfltGatGflGsfilrdlltrrkssslkvvahvraksee 1013
                  + e+ ++++ GatG +G +++r+l++ r + ++++va+vr+ +++
  MMETSP1061-20121228|6278_1   99 IPEKPKIVVLGATGRIGRHVVRQLMEMR-DVDMEIVAFVRSFDKA 142 
                  55678999******************99.9**********98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.10s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 2168.39
//
Query:       MMETSP1061-20121228|6284_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1401.60
//
Query:       MMETSP1061-20121228|6285_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1568.64
//
Query:       MMETSP1061-20121228|6287_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 746.03
//
Query:       MMETSP1061-20121228|6289_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 322.05
//
Query:       MMETSP1061-20121228|6294_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1061-20121228|6295_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 1958.43
//
Query:       MMETSP1061-20121228|6296_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 534.24
//
Query:       MMETSP1061-20121228|6300_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1501.94
//
Query:       MMETSP1061-20121228|6302_1  [L=899]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (899 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 2759.49
//
Query:       MMETSP1061-20121228|6305_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|6304_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1501.38
//
Query:       MMETSP1061-20121228|6309_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1035.07
//
Query:       MMETSP1061-20121228|6311_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1061-20121228|6307_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1430.76
//
Query:       MMETSP1061-20121228|6314_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1691.42
//
Query:       MMETSP1061-20121228|6318_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       299  (0.0728913); expected 82.0 (0.02)
Passed bias filter:                      200  (0.0487567); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 670.50
//
Query:       MMETSP1061-20121228|6313_1  [L=873]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.47
# Mc/sec: 2451.63
//
Query:       MMETSP1061-20121228|6322_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 482.05
//
Query:       MMETSP1061-20121228|6327_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 689.94
//
Query:       MMETSP1061-20121228|6320_1  [L=1028]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.45
# Mc/sec: 3015.22
//
Query:       MMETSP1061-20121228|6328_1  [L=949]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-12   41.9   0.1    1.3e-09   34.2   0.1    2.3  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    5.3e-11   39.3   0.0    3.9e-10   36.4   0.0    2.0  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.1   6.4e-13   1.3e-09      26     190 ..     262     449 ..     249     485 .. 0.75
   2 !    5.2   0.0   0.00035      0.73     314     369 ..     635     693 ..     593     698 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 6.4e-13
   TIGR04121  26 eegesglliapTGaGKTlavflpsliela.............akekpkkglkvlyitPLkaLakdieraleapieelgleirv..elrtGDtssserarqrkkppdiLltTpEsl..aLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarL.......rrlapelrvvglsATvgnleea 190
                 +++++ l++  TG+GKTla  +p++ +la             + ++++ g + + + P + La+++ + le+ +++    + v  +l  GD+ +se+a  rk  + +++ Tp  l  +L  +++ a +l  +l+ +v+DE   Ll    Gd+++  + ++       ++ +p  r v +sATv    +a
  MMETSP1061-20121228|6328_1 262 TKKKNVLIHSETGSGKTLAYLIPIIQSLAfgnkvdlstekpnKISRSEMGCRCIILCPTRELASQTLQVLERLCQANFAGWIVpgGLLGGDSRKSEKASLRKGLA-VIVATPGRLldHLHKTQSLALSLKGRLKWLVLDEADRLLDMGLGDQVRQIVQWIwaneacsSHQQPWWRSVLVSATVTPSVQA 449
                 567899**********************9****9997654433334449************************999888877755799**********9998875.77888888733344455556677789********************9988877633222223456777888888888754443 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.00035
   TIGR04121 314 LGvDfgdvdlviqvGspkgvaRllQRiGRsnHr.ldepskillvptna..lEllEaaaa 369
                  G+  + vd  +q   p  ++  + R+GR++      +s ++l+p+++  lE+lE++ +
  MMETSP1061-20121228|6328_1 635 RGLNLKGVDWTVQYDPPCEISDYVHRVGRAARGgKAGHSLLFLLPSERkyLEVLETKGI 693
                 5889999**********************98761456899999**987779****9866 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.9e-13   3.9e-10      49     205 ..     262     444 ..     223     469 .. 0.77
   2 ?    0.1   0.0     0.019        39     335     377 ..     629     671 ..     618     682 .. 0.84

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 1.9e-13
   TIGR03817  49 haGehvvvatgtasGkslayllPvlsalaed.........p........ratalylaPtkalaadqlravkelee.....rdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGv.fGshvalvlrrlrr..lcaryGaeP..vfllasatsa 205
                 ++ ++v +   t sGk+layl+P++++la           p        + + + l+Pt+ la+  l++++ l +       v    + Gd+ + e++ +r+   ++++ P  l   + ++ +   ++ ++l+++v+de+ +   + +G +v ++++ +     c+ + ++P    +l sat++
  MMETSP1061-20121228|6328_1 262 TKKKNVLIHSETGSGKTLAYLIPIIQSLAFGnkvdlstekPnkisrsemGCRCIILCPTRELASQTLQVLERLCQanfagWIVPGGLLGGDSRKSEKASLRKGLAVIVATPGRLLDHLHKTQSLALSLKGRLKWLVLDEADRLLDMgLGDQVRQIVQWIWAneACSSH-QQPwwRSVLVSATVT 444
                 566899**********************988555555555166666777999**********************966633334456799*************************9999999888889999**********9976654799999998876531134443.344112355566554 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.019
   TIGR03817 335 atnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqda 377
                 +t+    G+++ G+d +v    P  ++ +  ++Gra r g+  
  MMETSP1061-20121228|6328_1 629 TTDVSARGLNLKGVDWTVQYDPPCEISDYVHRVGRAARGGKAG 671
                 67777789******************************99864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (949 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.45
# Mc/sec: 2783.50
//
Query:       MMETSP1061-20121228|6324_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1404.74
//
Query:       MMETSP1061-20121228|6331_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1773.05
//
Query:       MMETSP1061-20121228|6333_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 580.75
//
Query:       MMETSP1061-20121228|6329_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-06   25.1   0.2      4e-06   24.3   0.2    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    0.00017   19.7   0.1     0.0004   18.5   0.0    1.6  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00029   18.4   0.0     0.0035   14.9   0.0    2.4  2  TIGR00537 hemK_rel_arch: putative methylase
    0.00084   16.9   0.0     0.0087   13.6   0.0    2.1  2  TIGR00138 gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB
     0.0068   14.7   0.5      0.019   13.3   0.0    2.0  3  TIGR01444 fkbM_fam: methyltransferase, FkbM family
  ------ inclusion threshold ------
      0.036   11.4   0.0       0.06   10.6   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.2   5.9e-09     4e-06     153     216 ..     147     211 ..     139     225 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 5.9e-09
   TIGR00406 153 lesldlkdkkviDvGcGSGiLsiaa.lklgaakvvavDiDplavesarkNlelNqvsdllqvkle 216
                   +  l++k+v++vG+G+G+ si a + lga+kv   D D  a+++ ++N++ N++  ++    +
  MMETSP1061-20121228|6329_1 147 IRMAALRHKRVLEVGAGAGLPSIVAhKILGASKVLVTDGDFDALNNLKHNVDSNRIVRMTPQSRS 211
                 56677899**************9762569**************************9877655544 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.8e-07    0.0004      11      67 ..     146     201 ..     139     224 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.8e-07
   TIGR02469  11 tLakLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfg 67 
                 +++  +l+ ++++l++GaG+G  +i a ++++  +v+  + + +al+++++N++ ++
  MMETSP1061-20121228|6329_1 146 SIRMAALR-HKRVLEVGAGAGLPSIVAHKILGASKVLVTDGDFDALNNLKHNVDSNR 201
                 45555666.679****************************************99875 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.1e-06    0.0035       5      64 ..     139     200 ..     136     206 .. 0.79
   2 ?    0.2   0.0      0.17   1.2e+02     124     165 ..     273     318 ..     263     324 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.1e-06
   TIGR00537   5 aedsllleknlrelknddvleiGaGtGlvairlkek.gk.kivatdinPfavkllkenakln 64 
                 +ed  +    +  l+ ++vle+GaG+Gl +i +++  g+ k++ td +  a   lk+n   n
  MMETSP1061-20121228|6329_1 139 SEDVTIGSIRMAALRHKRVLEVGAGAGLPSIVAHKIlGAsKVLVTDGDFDALNNLKHNVDSN 200
                 6666666777888999************9988776424468999999999999999887655 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.17
   TIGR00537 124 delpeilkegGrvqlvqsslsdek..etldklkelGfkv..eivae 165
                 + +++ l++ G+v+ vq++ s  +  +    l+++Gf++  ++v++
  MMETSP1061-20121228|6329_1 273 ETIDHLLEDDGVVVYVQTAASAVPwgDFKAALDHRGFETvhSVVGR 318
                 67899999*******9988876543367778999999752255555 PP

>> TIGR00138  gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.3e-05    0.0087      15      62 ..     127     171 ..     122     184 .. 0.86
   2 ?    0.8   0.0      0.11        73     102     165 ..     242     310 ..     235     323 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.3e-05
   TIGR00138  15 iNLtslkeeeelierhlldslkllellkeskkkviDiGsGaGfPGipl 62 
                  NL + ++++e  e   + s+ ++ l ++   +v+ +G GaG+P+i+ 
  MMETSP1061-20121228|6329_1 127 QNLDNDNDNDECSEDVTIGSIRMAALRHK---RVLEVGAGAGLPSIVA 171
                 6899999999999999*****99999985...9*************96 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.11
   TIGR00138 102 rvek.keeeekfdvitsra....laslnellelalkllkvgGvilalKGkkleeEieekkekiqklkve 165
                 +ve+   +++k+dv+++      + sl+ l e   +ll++ Gv++ ++ + +   + + k + + +++e
  MMETSP1061-20121228|6329_1 242 DVEQfLAKHGKQDVVLMADcvymVPSLKPLWETIDHLLEDDGVVVYVQTAASAVPWGDFKAALDHRGFE 310
                 5555544555566555432111157899999***********999998877776666666666666555 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0         5   3.4e+03      54      79 ..      72      97 ..      68     107 .. 0.64
   2 !   13.3   0.0   2.7e-05     0.019       2      66 ..     157     219 ..     156     232 .. 0.89
   3 ?   -2.6   0.0       2.2   1.5e+03      75     106 ..     338     369 ..     309     372 .. 0.64

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 5
   TIGR01444 54 naAvgdregeleftvsddatgnssla 79
                n+ +g++ ge++ +v  d++ +s + 
  MMETSP1061-20121228|6329_1 72 NVSAGNSCGEITADVDVDSSVTSVTI 97
                66777788887776666555555444 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.7e-05
   TIGR01444   2 viDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlknvkllnaAvgdregelef 66 
                 v+ +GA  G  s+v+ +  + ++v + + + d+l++l++nv  n +  v++ +   +d++g+ e+
  MMETSP1061-20121228|6329_1 157 VLEVGAGAGLPSIVAHKILGASKVLVTDGDFDALNNLKHNVDSNRI--VRMTPQSRSDNDGNKEI 219
                 799*******************************************..99999999999987665 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 2.2
   TIGR01444  75 nsslaadselaeeseieVevvtlddlveeagl 106
                 ++s+a+++e++e+ ++  +vv+ dd++ e+++
  MMETSP1061-20121228|6329_1 338 DDSVARHKEEYERGNTFFDVVRSDDYITEEKM 369
                 34445555444444445788888888888775 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.7e-05      0.06      89     138 ..     154     203 ..     141     213 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.7e-05
   TIGR03534  89 klkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglk 138
                 + +vl++g+G G   +   k l   kv+ +D + +Al+  ++N++++++ 
  MMETSP1061-20121228|6329_1 154 HKRVLEVGAGAGLPSIVAHKILGASKVLVTDGDFDALNNLKHNVDSNRIV 203
                 459******************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 2152.00
//
Query:       MMETSP1061-20121228|6335_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 845.93
//
Query:       MMETSP1061-20121228|6336_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-06   24.9   0.0    3.8e-06   24.4   0.0    1.2  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J
  ------ inclusion threshold ------
      0.026   11.7   0.0      0.047   10.8   0.0    1.4  1  TIGR00478 tly: hemolysin TlyA family protein


Domain annotation for each model (and alignments):
>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   1.8e-09   3.8e-06      35      80 ..      95     141 ..      88     146 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.8e-09
   TIGR00438  35 lvldlGaaPGGWsqvavekvgekGlviavdlqpvk....pienvdfirGd 80 
                  v+dlGa+PGGW+   +++  e   v+avd  p++      e+v+f++Gd
  MMETSP1061-20121228|6336_1  95 PVIDLGACPGGWTGALRRMGCE---VVAVDRSPLDpglmRDEGVEFVQGD 141
                 69***********998888887...**********6555579*******9 PP

>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.3e-05     0.047      75     133 ..      92     147 ..      71     155 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.3e-05
   TIGR00478  75 knkivlDvGsStGGFtdcalqkGAkkvygvdvgknqleekLrqdeRvkvlertniryvt 133
                 +++ v+D+G+  GG+t  + + G  +v +vd +   l+ +L +de v+ ++   +r+v 
  MMETSP1061-20121228|6336_1  92 QEHPVIDLGACPGGWTGALRRMGC-EVVAVDRSP--LDPGLMRDEGVEFVQGDAFRFVP 147
                 56679***********99999975.788999888..*************9999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1816.42
//
Query:       MMETSP1061-20121228|6338_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-83  276.6   0.0    8.4e-82  272.9   0.0    2.3  1  TIGR00131 gal_kin: galactokinase
    9.2e-19   65.8   0.0    1.7e-08   32.1   0.0    2.2  2  TIGR00549 mevalon_kin: mevalonate kinase
     0.0019   15.5   0.0     0.0032   14.7   0.0    1.3  1  TIGR01920 Shik_kin_archae: shikimate kinase
  ------ inclusion threshold ------
      0.011   12.4   0.0      0.022   11.4   0.0    1.4  2  TIGR00191 thrB: homoserine kinase


Domain annotation for each model (and alignments):
>> TIGR00131  gal_kin: galactokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.9   0.0   8.2e-85   8.4e-82      17     385 ..      33     453 ..      25     456 .. 0.80

  Alignments for each domain:
  == domain 1    score: 272.9 bits;  conditional E-value: 8.2e-85
   TIGR00131  17 dlvvraPGRvnliGehiDYndgsvlPlaidvdtlvavker........ddknvsitlanadnklaerkldlpldksev............sdWanYvkgvlkvlq.eRfnsvplGldivisgdvPtgaGLsssaalevavaavlk.nlgkleld................skeillriqkveehfvGvncGgmDqlasvlGeedhallvefrkLkatpvklpql......ei.alviantnvksnlapseYnlRrqeveeaakvlakk.sekgaLrDvkeeefarye............arltkllqlvekqRakhvvsenlRvlkavkllkdedlkelGkLmnesqasldddyeitvpeidelvesialvnGsiGsRltGaGfGGCtvalvpnenvekvrkalaekYekktdlklefavivskeal 385
                   ++ aPGRvnliGeh+DY++g+vlP aid+ t+v ++          + +  +     + + l   +l++      +              W+ Yv g++ +   +  + ++l l+  isgdvP g+GLsssa+levava +++  lg++  +                sk  +lr qk+e+++    cG+mDq++s+      +ll+++r+L+  p+k+ ++       +  lv+an+nvk+ + ++eY +R+ +++ a ++l+++   ++ LrD ++e+ +               + +t+ ++ v   Ra+hv +en+R+l a + l+ +d  ++G+Lmn+s+ s++ddye+++ e+d lv ++++  G++GsRltG+GfGGCtv+lv ++  e++ + +  +Y++ t++    +v  + +++
  MMETSP1061-20121228|6338_1  33 SAIAVAPGRVNLIGEHTDYTGGFVLPFAIDYSTVVYGRGSigsgsdsgNGNGKRRAKLSFVSALTPDSLEV------MecsesssvppepVAWTSYVLGTVFQYLpDLPEGAELQLEFCISGDVPLGSGLSSSASLEVAVARFVEaVLGDHAFSseqpngkshsslgfspSKTRALRCQKAENEWCNSPCGIMDQAISSAATSGSLLLIDCRTLDFVPTKMAETslvredPVpVLVVANSNVKHSIGGGEYPVRVAQCKAATEALRRTnPGITLLRDATPEDVEAAMesgafsvsddddETTTTTTTRVSYLRARHVTTENERTLRAREDLEAGDWASVGALMNASHSSMRDDYEVSCEEVDILVGIAKDFPGVYGSRLTGGGFGGCTVTLVAEDRAEELMEHMRREYKAETGIDCPCFVTRPARGA 453
                 56788****************************99655331111100011112222223333444444444......033333466777799*****9988765524444555578899**********************99986666543331111111111122222567899*********************************************9987788763425799****************************9883457889******9986557999999999988888888899999******************************************************************************************************9988888777665 PP

>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   1.7e-11   1.7e-08       1     116 [.      38     177 ..      38     271 .. 0.76
   2 !   31.9   0.0   1.9e-11     2e-08     168     276 .]     315     417 ..     293     417 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 1.7e-11
   TIGR00549   1 apgKviLfGEHaVVYgepAiaaaiealttvtvie....................eskeislieselgrkslakvsqelsklle...........syiaavlskleekkeaalkveieseipigaGLGSSAavavaliaalaalfgse 116
                 apg v L+GEH    g  ++ +ai+  t+v  +                              s+l+  sl+ ++   s+++              + ++l  l e  e +l++ i + +p g+GL+SSA++ va+++ + a++g+ 
  MMETSP1061-20121228|6338_1  38 APGRVNLIGEHTDYTGGFVLPFAIDYSTVVYGRGsigsgsdsgngngkrraklsF-------VSALTPDSLEVMECSESSSVPpepvawtsyvlGTVFQYLPDLPEGAELQLEFCISGDVPLGSGLSSSASLEVAVARFVEAVLGDH 177
                 8************************999999998889988888776544333330.......3333333444333333333336666676433344555555556666655*****************************9999943 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 1.9e-11
   TIGR00549 168 alslviadtgvsrsTkelVakVrellekfpeviksileaigelvkeakaaledkdveqlgelmninqglLk.slgvShpkleqlvelark.agalgaKlTGaGgGGcvial 276
                  + + + d +  ++T +   +V+ l+ ++       + + +e + +a++ le +d  ++g lmn+ ++ ++ +  vS ++++ lv +a++  g+ g+ lTG+G GGc+++l
  MMETSP1061-20121228|6338_1 315 SGAFSVSDDDD-ETTTTTTTRVSYLRARH-------VTTENERTLRAREDLEAGDWASVGALMNASHSSMRdDYEVSCEEVDILVGIAKDfPGVYGSRLTGGGFGGCTVTL 417
                 55566655543.33444456666666665.......44557889999********************9996379**************98459****************97 PP

>> TIGR01920  Shik_kin_archae: shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   3.2e-06    0.0032      66     106 ..     138     178 ..     123     202 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.2e-06
   TIGR01920  66 ikegleveveseiPagsGLksSsAlvnAlvlavlkakgeei 106
                  + +le+ + +++P gsGL+sS+ l +A++  v  ++g+++
  MMETSP1061-20121228|6338_1 138 AELQLEFCISGDVPLGSGLSSSASLEVAVARFVEAVLGDHA 178
                 5668999*********************9887777777665 PP

>> TIGR00191  thrB: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.2e-05     0.022      60     114 ..     121     175 ..      87     183 .. 0.75
   2 ?   -4.0   0.0       1.1   1.1e+03     141     269 ..     410     422 ..     396     439 .. 0.44

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
   TIGR00191  60 kNliyqvakkvlkklgkrvkpvkltvekeiplgrGLGSSaaaivaaviaanelag 114
                   ++  v++++ +  + +   +++ ++ ++plg+GL SSa+  va +  +++++g
  MMETSP1061-20121228|6338_1 121 SYVLGTVFQYLPDLPEGAELQLEFCISGDVPLGSGLSSSASLEVAVARFVEAVLG 175
                 5566667777776666555788999***************999998877777665 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 1.1
   TIGR00191 141 lGGlqlavkeddllevlkvPsgsklkvvlviPnievsTaeaRavLPkaysrqdlvfnlshlavlvtAlvskdkadllaiamkDrvhqpyRekliPelteikqaakekgalgitlSGaGptilalaeeek 269
                 +GG+++++  +d                                                                                                                    +
  MMETSP1061-20121228|6338_1 410 FGGCTVTLVAED--------------------------------------------------------------------------------------------------------------------R 422
                 333333333333....................................................................................................................2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.24
# Mc/sec: 2529.79
//
Query:       MMETSP1061-20121228|6342_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-42  141.9   0.0    4.2e-27   92.7   0.0    2.4  2  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
    1.5e-05   21.2   1.8     0.0093   12.0   0.1    2.2  2  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
    2.3e-05   22.1   1.4    0.00016   19.3   0.2    2.2  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00013   19.0   1.4     0.0068   13.4   0.3    2.4  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    0.00017   18.5   0.5    0.00031   17.7   0.3    1.3  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
    0.00023   17.8   2.1      0.003   14.1   0.1    2.3  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00055   16.4   0.0    0.00096   15.6   0.0    1.3  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0008   16.4   0.1     0.0014   15.6   0.1    1.3  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0012   15.9   0.0     0.0019   15.1   0.0    1.3  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0019   14.9   0.1      0.046   10.4   0.0    2.5  3  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
     0.0044   13.4   2.3       0.15    8.3   0.0    2.1  2  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
  ------ inclusion threshold ------
      0.017   11.7   0.0      0.049   10.3   0.0    1.7  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
       0.02   11.9   2.3      0.097    9.7   0.2    2.4  3  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
      0.024   11.4   0.1       0.04   10.7   0.1    1.2  1  TIGR00757 RNaseEG: ribonuclease, Rne/Rng family
      0.041   10.8   0.4      0.064   10.2   0.3    1.2  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.095    9.5   2.5        1.4    5.6   0.2    2.3  2  TIGR02053 MerA: mercuric reductase
        0.1    9.1   2.6       0.29    7.6   0.1    2.1  2  TIGR01813 flavo_cyto_c: flavocytochrome c


Domain annotation for each model (and alignments):
>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.4   2.4e-15   5.7e-13       1      54 [.     112     165 ..     112     169 .. 0.95
   2 !   92.7   0.0   1.7e-29   4.2e-27     113     412 ..     264     576 ..     259     663 .. 0.76

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 2.4e-15
   TIGR03377   1 dvvviGGGatGaGilRDlalRglkvvLlekkdlasGttgRnhGLLhsGaRYavk 54 
                 dv+viGGGatGaGi+ D a+Rgl++  +e+ d as t++R   L+ +G +Y  +
  MMETSP1061-20121228|6342_1 112 DVLVIGGGATGAGIALDAAMRGLQTACIERGDFASETSSRSTKLIWAGIKYMAT 165
                 79************************************************9765 PP

  == domain 2    score: 92.7 bits;  conditional E-value: 1.7e-29
   TIGR03377 113 dpeealrlePalnk.elikavkvpDgtvDpfrlvaanvldakehGariltytkvvglire..gdrvtgvkvedlktgeeeeieaevvvnaaGaWaqeiael.a...d....lkielvpakGvllvlnhRlnnkvinRl.rkpsdaDi..lvPgdtisllGttsekvddiddleveqeevdellde.gakliPalaeaR..ilrafaGvRPLvasdddesgreisRgivlldheerdgleGlisivGGklttyRlmaekvtdvvckklgndkecrtaeeplpgsedakalk..klkkllslekelaesaveRhgeraekl 412
                 ++++a++  P+l++ +l+      ++  +  r  +a ++ a e+Ga i++y ++v+ i++   ++v+gv++ d +tg+++ei+a+ v+ a+G +++ + e+ +   d    +   ++ a G+ +vl      + +  l  + sd+    + P +  +l+Gtt++k     + +++++e++ ll+e g+ l+P ++  R  +l a+ G RPL a+++ + +  +sR+ v+ +        G+i i GGk tt+R mae+v+d v+++     +crt e+ l g e  ++    +l ++ +l++++ae+ v+ +g r  ++
  MMETSP1061-20121228|6342_1 264 TTKKAREVFPQLEEkDLKYCAVFYEAQHNDARTNVAIAMTAAEKGAAITNYVEMVDTIKDpsTGKVVGVHAVDRMTGNAFEIRAKRVIFAGGPFTDGLREMeVdteDqrkkMPSAVRGASGTHIVLPGYYCPNEMGLLdYNTSDGRFlfMLPWEGHTLVGTTDTKGPAETSPRPPEDEIEWLLKEcGKYLTPDMKLRRsdVLSAWRGWRPLAADPHAPPDAPVSRDHVISEN----PDTGVIFIAGGKWTTWREMAEEVVDRVAQN--APGRCRTLETKLFGGEGYTKSLsiELIQKYGLSQTVAEHLVKAYGGRSWEV 576
                 56778888888865145555555677788889999999********************9733689*******************************9998843222211113345677899999997666554444441456788752268***************999999********999864899***998766559*************************998554....3479************************95..6789*********99987665401445667899999999999999887776 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.1   3.9e-05    0.0093       2      32 ..     110     140 ..     109     151 .. 0.94
   2 !    8.6   0.1    0.0004     0.096     161     197 ..     317     355 ..     295     361 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.9e-05
   TIGR01816   2 kfdvvvvGaGGaGlraalelakeglktavvt 32 
                 +fdv+v+G+G +G   al++a +gl+ta++ 
  MMETSP1061-20121228|6342_1 110 SFDVLVIGGGATGAGIALDAAMRGLQTACIE 140
                 7****************************96 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0004
   TIGR01816 161 aldlile..dgevrGvialeletGeihvfrakavvlatG 197
                  +d i++   g+v+Gv a++  tG+ + +rak v++a G
  MMETSP1061-20121228|6342_1 317 MVDTIKDpsTGKVVGVHAVDRMTGNAFEIRAKRVIFAGG 355
                 578888876899************************988 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.2   6.5e-07   0.00016       1      35 [.     111     145 ..     111     159 .. 0.95
   2 ?    1.4   0.0      0.19        47      97     161 ..     300     372 ..     255     386 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 6.5e-07
   TIGR02032   1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelp 35 
                 +Dv+v+G+G  G+ +Al++a  Gl+++ +e+ ++ 
  MMETSP1061-20121228|6342_1 111 FDVLVIGGGATGAGIALDAAMRGLQTACIERGDFA 145
                 7******************************9986 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.19
   TIGR02032  97 LaekAqeagaelllettvlsveied........ekvkvevred...ekkevtakivigAdGakskvakklglk..kek 161
                 +a  A+e+ga ++   ++++ +i+d        ++++         +  e++ak vi A G+ +   ++++++   ++
  MMETSP1061-20121228|6342_1 300 IAMTAAEKGAAITNYVEMVD-TIKDpstgkvvgVHAVD----RmtgNAFEIRAKRVIFAGGPFTDGLREMEVDteDQR 372
                 77889999999888888887.66667876553322222....133468899**********99888887776642333 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.3   2.8e-05    0.0068       1      38 [.     113     150 ..     113     155 .. 0.95
   2 ?    3.8   0.0     0.023       5.5     119     308 ..     262     477 ..     251     487 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.8e-05
   TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekdevgsgAsk 38 
                 vlviGgG  G  +A+ +a rg +++ +e+++++s++s+
  MMETSP1061-20121228|6342_1 113 VLVIGGGATGAGIALDAAMRGLQTACIERGDFASETSS 150
                 79********************************9996 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.023
   TIGR02352 119 slskealrelePelsee.irgavflpedaqvdprellkaLvkaleklGveiieevevqeiea..rgekvtavk......tssekvqadqvvlaaGawakellp.............lalrpvkgeilrlevpaekllnrpvravvy.qrqvYivPredgrlvvGAtsee..sgfdttvtlegvkeLledaie.vlPa..lkeaelletwaGlRPatpD 308
                 +++++++re+ P+l+e+ +++   + e ++ d+r  + a +  +++ G+ i++ ve+ ++ +  +  kv++v       ++  ++ a +v++a+G     l +              a+r   g  + l     +++  ++++    +r +++ P e +  +vG t  +  ++ +  + ++ ++ Ll++  + + P   l   ++l++w G RP   D
  MMETSP1061-20121228|6342_1 262 IMTTKKAREVFPQLEEKdLKYCAVFYEAQHNDARTNV-AIAMTAAEKGAAITNYVEMVDTIKdpSTGKVVGVHavdrmtGNAFEIRAKRVIFAGGPFTDGLREmevdtedqrkkmpSAVRGASGTHIVLPGYYCPNEMGLLDYNTSdGRFLFMLPWEGH-TLVGTTDTKgpAETSPRPPEDEIEWLLKECGKyLTPDmkLRRSDVLSAWRGWRPLAAD 477
                 5678889999999986525554444444455555554.4445555778888887776654331133344443311111133347888899999888777777666677777777766777777777776666567777777765541455678887766.7788876651145555566788888888876525675224577888888888887665 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.3   1.3e-06   0.00031       1      45 [.     111     155 ..     111     161 .. 0.95

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.3e-06
   TIGR03378   1 fDviiiGgGlaGlscalrlaeaGkktaiiaaGqsalhFssGslDl 45 
                 fDv++iGgG  G   al +a +G +ta i +G  a + ss s  l
  MMETSP1061-20121228|6342_1 111 FDVLVIGGGATGAGIALDAAMRGLQTACIERGDFASETSSRSTKL 155
                 9************************************99998766 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.3e-05     0.003       2      33 ..     111     142 ..     110     146 .. 0.93
   2 ?    2.9   0.1     0.033       7.9     372     411 ..     298     337 ..     287     351 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.3e-05
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalveke 33 
                 +dv+viGgG  G   A  aa  gl++a++e+ 
  MMETSP1061-20121228|6342_1 111 FDVLVIGGGATGAGIALDAAMRGLQTACIERG 142
                 9*****************************85 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.033
   TIGR01350 372 gkfpfaangkalaleetdGfvkvivdkktgeilGahivga 411
                 + + ++a  k  a+ ++  +v +i d++tg+++G+h v  
  MMETSP1061-20121228|6342_1 298 VAIAMTAAEKGAAITNYVEMVDTIKDPSTGKVVGVHAVDR 337
                 4567889999999***********************9865 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     4e-06   0.00096     209     241 ..     107     139 ..      94     151 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4e-06
   TIGR03140 209 ekekydvlvvGgGPagaaaaiyaarkGlkvalv 241
                 + e +dvlv+GgG  ga  a+ aa +Gl++a +
  MMETSP1061-20121228|6342_1 107 DGESFDVLVIGGGATGAGIALDAAMRGLQTACI 139
                 5579**************************988 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.1   5.7e-06    0.0014       2      41 ..     112     151 ..     111     162 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.7e-06
   TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvierssraaGAsvr 41 
                 dv+v+G+G  G  +Al aa rGl+ + ier + a   s r
  MMETSP1061-20121228|6342_1 112 DVLVIGGGATGAGIALDAAMRGLQTACIERGDFASETSSR 151
                 9*****************************9999888766 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.9e-06    0.0019       1      91 [.     112     201 ..     112     213 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 7.9e-06
   TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgASgnrqGalypllsaddnalsrfllaaflyar.rlleqlaeagvefdhelcgvlq 91 
                 +v+vIG+G  ga +al  a rG+q   +e+  + a+++S+  + ++ + ++   +a s +l + fl +  + ++ +  +++++ ++ ++  q
  MMETSP1061-20121228|6342_1 112 DVLVIGGGATGAGIALDAAMRGLQTACIERG-DFASETSSRSTKLIWAGIKYMATATSILLSKQFLTSPvKTVKDFY-SEMKMVFHCHQERQ 201
                 599***************************9.9********999999999988888888887777765313333332.22344444444444 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00019     0.046       1      34 [.     112     145 ..     112     154 .. 0.93
   2 ?    1.4   0.0       0.1        24     107     139 ..     334     373 ..     298     376 .. 0.69
   3 ?   -2.8   0.0         2   4.7e+02     123     156 ..     573     606 ..     557     609 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00019
   TIGR04018   1 dviiiGaGPiGlaaaieakkaglsyliiekgalv 34 
                 dv++iG+G +G  +a++a  +gl++  ie+g  +
  MMETSP1061-20121228|6342_1 112 DVLVIGGGATGAGIALDAAMRGLQTACIERGDFA 145
                 89****************************9765 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.1
   TIGR04018 107 t......ekeeyeakkvvvatGyy.dipnllnvpGedlpk 139
                 +      +  e++ak+v+ a G + d  + ++v  ed+ k
  MMETSP1061-20121228|6342_1 334 AvdrmtgNAFEIRAKRVIFAGGPFtDGLREMEVDTEDQRK 373
                 2444444666899*********77488999*****99876 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 2
   TIGR04018 123 yydipnllnvpGedlpkvshyykeahpyvkqkvv 156
                  +++ +l++  G++ pk      e++py++ +vv
  MMETSP1061-20121228|6342_1 573 SWEVCELMEPTGKKWPKFGRLLVESYPYIDADVV 606
                 4778889999999*****************9997 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.3    0.0076       1.8       1      29 [.     112     140 ..     112     150 .. 0.95
   2 !    8.3   0.0   0.00061      0.15     139     189 ..     304     356 ..     286     364 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0076
   TIGR01812   1 DvvivGaGlAGlraAveaakkglkvavis 29 
                 Dv+++G+G  G   A++aa +gl++a+i 
  MMETSP1061-20121228|6342_1 112 DVLVIGGGATGAGIALDAAMRGLQTACIE 140
                 99************************996 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00061
   TIGR01812 139 llklgveifeeyfvldlile..dkevkGvvaidlktgevvvlrakavvlatGG 189
                 + ++g  i + ++++d i++  +++v Gv a+d +tg+ + +rak v++a G 
  MMETSP1061-20121228|6342_1 304 AAEKGAAITNYVEMVDTIKDpsTGKVVGVHAVDRMTGNAFEIRAKRVIFAGGP 356
                 455677788888899999998788**************************985 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0002     0.049       2      58 ..     112     168 ..     111     220 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0002
   TIGR01292   2 dviiiGaGpaGltaaiYaaranlktlliegkeaggqlttttevenyPGfkegisgse 58 
                 dv++iG+G++G   a+ aa+ +l+t++ie+ + +++ +  ++   + G+k + ++++
  MMETSP1061-20121228|6342_1 112 DVLVIGGGATGAGIALDAAMRGLQTACIERGDFASETSSRSTKLIWAGIKYMATATS 168
                 89***************************9999888777666666777766655544 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2    0.0004     0.097       2      35 ..     110     143 ..     109     168 .. 0.86
   2 ?    0.9   0.0      0.18        43     260     304 ..     648     693 ..     616     702 .. 0.86
   3 ?   -0.3   0.1      0.41        99     225     291 ..     678     747 ..     655     753 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0004
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveekk 35 
                 ++d+lviGGG+ G   a  aa+ G +++ +e  +
  MMETSP1061-20121228|6342_1 110 SFDVLVIGGGATGAGIALDAAMRGLQTACIERGD 143
                 79****************************9765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.18
   TIGR01421 260 aiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiya.lGdv 304
                  +G  p++k+ ++e++++ +++ g    d +q+    g+y  + dv
  MMETSP1061-20121228|6342_1 648 ELGWTPEVKQQQMENAEIYVHSYGGRLSDTHQDKLKAGVYKnIEDV 693
                 57899**********************************9526666 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.41
   TIGR01421 225 hklskvvkvektvegklv.itledg..keiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyq 291
                 h+ +  + v k++e+  v i  ++    e e+v+e+  ++G + +tkdl+    ++  ++kg +++ ++ 
  MMETSP1061-20121228|6342_1 678 HQDKLKAGVYKNIEDVFVaIDSNENgfLEEEEVQEVAATLGFNMSTKDLEKAFHDMDRENKGRVTIQDFV 747
                 4555555666676663330322222445678899999999999999999999999999999999998886 PP

>> TIGR00757  RNaseEG: ribonuclease, Rne/Rng family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00016      0.04       8      78 ..     656     727 ..     653     752 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00016
   TIGR00757   8 eegeledleierkkskqkvgniykgkvtr.vlpslqaaFvdigeekegflhlsdilknseklepaeakreae 78 
                 +++++e+ ei  ++   + ++ ++ k++  v ++++ +Fv i+++++gfl+ +++++ +++l  +  ++  e
  MMETSP1061-20121228|6342_1 656 KQQQMENAEIYVHSYGGRLSDTHQDKLKAgVYKNIEDVFVAIDSNENGFLEEEEVQEVAATLGFNMSTKDLE 727
                 566666666666666666777777777643889***********************9988887443333333 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.3   0.00026     0.064       1      30 [.     112     141 ..     112     149 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00026
   TIGR01790   1 DliviGgGlAglaiAlelakpglrvqliea 30 
                 D++viGgG  g  iAl  a +gl+   ie 
  MMETSP1061-20121228|6342_1 112 DVLVIGGGATGAGIALDAAMRGLQTACIER 141
                 9***********************999985 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.2    0.0057       1.4       1      33 [.     111     143 ..     111     150 .. 0.92
   2 ?    3.3   0.1     0.029       7.1     371     415 ..     298     342 ..     270     355 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0057
   TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlverGi 33 
                 +d+++iG+Ga++   a+ aa  g + + +erG 
  MMETSP1061-20121228|6342_1 111 FDVLVIGGGATGAGIALDAAMRGLQTACIERGD 143
                 5899**************************995 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.029
   TIGR02053 371 rtvkleavpralinretrGliKlvaeketkkvlgvqvvaeeAaev 415
                  ++ ++a  ++ +  +   ++  + ++ t+kv+gv++v +  +++
  MMETSP1061-20121228|6342_1 298 VAIAMTAAEKGAAITNYVEMVDTIKDPSTGKVVGVHAVDRMTGNA 342
                 3678888899999999999******************98877665 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1       0.1        25       1      26 [.     112     137 ..     112     159 .. 0.86
   2 ?    7.6   0.1    0.0012      0.29     138     198 ..     302     365 ..     291     389 .. 0.72

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.1
   TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaev 26 
                 dv+v+G G+ G   al+a  +gl+ +
  MMETSP1061-20121228|6342_1 112 DVLVIGGGATGAGIALDAAMRGLQTA 137
                 89*****************9996544 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0012
   TIGR01813 138 kkakkegvelrlnskvedlikd.dqgqvtGvkvke.kgkkikikaakaVvlatGGfgsn.keli 198
                  +a ++g  + +  +++d ikd  +g+v+Gv++ + ++++   + ak V++a G f+   +e+ 
  MMETSP1061-20121228|6342_1 302 MTAAEKGAAITNYVEMVDTIKDpSTGKVVGVHAVDrMTGNAFEIRAKRVIFAGGPFTDGlREME 365
                 57788888899999999999984579*****87663666667778999********85413444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      210  (0.0511945); expected 82.0 (0.02)
Passed Vit filter:                        54  (0.0131643); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.61u 0.15s 00:00:00.76 Elapsed: 00:00:00.38
# Mc/sec: 2730.09
//
Query:       MMETSP1061-20121228|6340_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.2e-192  637.8   0.1   5.1e-192  637.5   0.0    1.0  1  TIGR00418 thrS: threonine--tRNA ligase
    9.8e-14   48.9   0.2    1.2e-07   28.8   0.0    2.1  2  TIGR00408 proS_fam_I: proline--tRNA ligase
    3.6e-12   43.8   0.0    2.4e-05   21.3   0.0    2.2  2  TIGR00442 hisS: histidine--tRNA ligase
    5.5e-12   42.8   0.1    0.00011   18.7   0.0    3.1  3  TIGR00389 glyS_dimeric: glycine--tRNA ligase
    2.9e-11   40.7   1.3    3.9e-09   33.7   0.1    2.2  2  TIGR00409 proS_fam_II: proline--tRNA ligase
      2e-07   28.2   0.0    3.9e-07   27.2   0.0    1.4  1  TIGR00414 serS: serine--tRNA ligase
    5.8e-05   19.3   0.0    9.8e-05   18.6   0.0    1.3  1  TIGR00344 alaS: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  637.5   0.0  8.8e-195  5.1e-192       1     563 [.     186     747 ..     186     749 .. 0.97

  Alignments for each domain:
  == domain 1    score: 637.5 bits;  conditional E-value: 8.8e-195
   TIGR00418   1 rhsiahllaeavkklyleeklavgpvvedgfyydvev.ekelaeedlekiekelkelakkklpvaklsvsleeakeafkvleklklelldeieeeeekvtvyeqgkafvdlckgphlselsrikafklekvagaywlgdekneelqriygiafekkkeLkeylkakeeakkrdHrklgkeleLfsfeeevgpGlvlwlpkGalirklledfvrekllkrgyeevetPiladlelweisghldkykermfrfkeeeekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEksGeLvGLkRvRgftldDaHifctedQikeEiknalrliqkvlkklglseekvelstrdpedkyigedeewekaeakleealkel..eveyeieegeaafygpKidfaikdaLkreiqlaTvQlDfelperfdltyvded....ekekrPviiHrailGsieRfiaiLlEkaagelPlwLaPvQvrvipvsekhldyakkvaeklkkegirvdvddrneklgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleellekvrk 563
                 +hs+ah+++ea ++  +  kl++gp+ ++gfyyd ++ + ++  +d + ieke+ +++kkk+++++  ++++ea+e+f+ ++++k+++l+++ ++++++tvy++g+ ++dlc+gph+s+++++kaf+  k ++aywlgd++n++lqr+ygi+f +kk+Lk ++++ e+ak+rdHr+l  +++L++f+   +pG+ +w+p+G++i++ l +f+r+++ +rgy+ev+tP++ +l+lw++sgh+ +yk++mf f+ e  +e ++kpmnCpgh+l+f s++rsyrdLP+r a++gv+hR+E sG+L+GL+RvR+f++dD Hifc+edQi++E+   l++++ v++ +g++ +k+elstr p+++ +ge+e w++aea+le+a++ +  + ++++++g++afygpKid++++da++r +q+aTvQlDf+lp rfdl+y+++     ++  rP+i+Hra+lGs+eR++a+L+E+ ag++P+wL+P Q++vipv + + +ya+++++k  + +   dvd ++ + +kk+R+aq+ +++++lvvG +Eve+ +v++R+r+++ + +m++++++e+ +k
  MMETSP1061-20121228|6340_1 186 WHSSAHMMGEA-LEHLFGSKLTIGPPLKSGFYYDSYMgTDSIKDDDYKPIEKEVTSIIKKKQKFERMVITKDEALELFA-DNPFKVKILSTKVPDGTRTTVYRCGD-LIDLCRGPHVSHTGKVKAFAAAKHSAAYWLGDAENDSLQRLYGISFPDKKQLKVWQEMMEKAKERDHRRLANKQDLVMFN-DLSPGSAFWMPHGTRIYNKLIEFIRKQYWERGYDEVITPNIFNLNLWHQSGHALHYKDDMFSFEVEG-QEWAMKPMNCPGHCLMFGSQIRSYRDLPIRYADFGVLHRNELSGALTGLTRVRRFQQDDGHIFCREDQITQEVLGSLNFMKFVYDIFGMT-YKLELSTR-PKKA-LGEKELWDRAEAALEDAMNTFagKGNWRVNPGDGAFYGPKIDIKVMDAMDRIHQCATVQLDFQLPIRFDLKYTTDSkeegKQFARPIIVHRAMLGSVERMFAVLTEHWAGKWPFWLSPRQAMVIPVHKDFGEYAESIRQKTPQGNDVLDVDLSKATFQKKVRNAQIAQYNFQLVVGANEVENGTVNIRTRENKVEGEMKVDDMIEMFKK 747
                 79********8.6667789***************99846789999**********************************.**************************.********************************************************************************.899**********************************************************988876.*****************************************************************************************8.********.*986.******************98733578**********************************************9876333233469************************************************************************************************************************9876 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.1e-10   1.2e-07      17     188 ..     361     526 ..     352     555 .. 0.86
   2 !   18.1   0.0   3.8e-07   0.00022     217     384 ..     589     752 ..     571     753 .] 0.80

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.1e-10
   TIGR00408  17 ekaelldyydvk.GlvvllpnsfkiwekiqkllddkldeieveevyfPllipeselekEkeHikGFepEvylitqaGkkkLeeklalRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkht.rPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiP 188
                 +k +l+   d++ G   ++p++ +i++k+ ++++++  e + +ev  P +     l +   H   ++++++  +  G++      a++P      + ++  +++syrdLP+++  +    R E   +   l R+r f   ++H ++  +++  +evl  l++ k +++   ++ 
  MMETSP1061-20121228|6340_1 361 NKQDLVMFNDLSpGSAFWMPHGTRIYNKLIEFIRKQYWERGYDEVITPNIFN-LNLWHQSGHALHYKDDMFSFEVEGQE-----WAMKPMNCPGHCLMFGSQIRSYRDLPIRYADFGVLHRNELSGAlTGLTRVRRFQQDDGH-IFCREDQITQEVLGSLNFMKFVYD-IFGMT 526
                 5667777777655999********************************9765.556667889999************86.....68888899999****************************986526899******99999.8999999**********9999988.66655 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 3.8e-07
   TIGR00408 217 ralqiatsHdLgqnFaktFeikfenkeg.......ekayayqtsyGlstRvigaliliHsDdkGLvlPpkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdnrpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekkKvevsldeleekvkelleel 384
                 r  q+at+ +L  +    F++k+ + +        + +++++   G  +R+ ++l    +       P+ ++p q +vip + k        e+a+++++k  + +  + +d ++ +  kk  +a +    ++l vg +++e+++v++ +R++k   e+++d++ e +k+l +e+
  MMETSP1061-20121228|6340_1 589 RIHQCATV-QLDFQLPIRFDLKYTTDSKeegkqfaRPIIVHRAMLGSVERMFAVLTEHWA----GKWPFWLSPRQAMVIP-VHK-----DFGEYAESIRQKTPQGNDVLDVDLSKATFQKKVRNAQIAQYNFQLVVGANEVENGTVNIRTRENKVEGEMKVDDMIEMFKKLRDEY 752
                 66688888.688888888999998765534454545567788888888888776654333....347*************.433.....346999999999999988899999999************************************99999***********9998887 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.7e-08   5.1e-05       9     162 ..     378     534 ..     372     556 .. 0.83
   2 !   21.3   0.0     4e-08   2.4e-05     306     403 ..     636     735 ..     633     738 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 8.7e-08
   TIGR00442   9 llpeeaekrqkveetirevfesygfeeietPilEktellkrkvGeetdivekemYsfedkggrslaLRpelTapvvRavvenklelkk.pfklyyigpvFRyErpqk....GRyRqFhQldvevvGsesp..ladaeiialaaelleelglkevtleinsl 162
                 ++p+ +++ +k++e ir+ + + g++e+ tP + +++l +++ G      + +m+sfe +g ++ a++p    + + ++ ++ ++++  p+++  +g + R+E   +     R+R F Q d  ++  e+   +  +  +++++ +++ +g+ +++le++++
  MMETSP1061-20121228|6340_1 378 WMPHGTRIYNKLIEFIRKQYWERGYDEVITPNIFNLNLWHQS-GHALH-YKDDMFSFEVEG-QEWAMKPMNCPGHCLMFGSQIRSYRDlPIRYADFGVLHRNELSGAltglTRVRRFQQDDGHIFCREDQitQEVLGSLNFMKFVYDIFGM-TYKLELSTR 534
                 78999999******************************9998.56655.99*******966.788*********999998887777666**************987555448*********999988874224445566777777777777.677777776 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 4e-08
   TIGR00442 306 eRllllleee..glleeekkkadvlvvaldeeaeaealklaeklrkagirvevdlegkklkkqlkyadkkgakfvvilgedelekgkvtlkdletgeqee 403
                 eR++++l e+  g+++   +  +++v++++++  ++a ++ +k  + +  ++vdl+++ ++k++++a+ ++++f +++g++e+e+g+v+++  e++ + e
  MMETSP1061-20121228|6340_1 636 ERMFAVLTEHwaGKWPFWLSPRQAMVIPVHKDFGEYAESIRQKTPQGNDVLDVDLSKATFQKKVRNAQIAQYNFQLVVGANEVENGTVNIRTRENKVEGE 735
                 6666666554113334466788999*****99999999999999999999*****************************************988876655 PP

>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   5.2e-05      0.03      29      86 ..     375     431 ..     347     441 .. 0.86
   2 !   10.0   0.0   8.4e-05     0.049     171     223 ..     453     505 ..     433     519 .. 0.78
   3 !   18.7   0.0   1.9e-07   0.00011     465     564 ..     650     748 ..     644     749 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.2e-05
   TIGR00389  29 lvDygPlGaelknnikkawrkffileeevlevdspiltpeevlkasGHvdkFtDalve 86 
                 +  + P G+ + n++++  rk++  e++  ev +p + + ++++ sGH+ +++D +  
  MMETSP1061-20121228|6340_1 375 SAFWMPHGTRIYNKLIEFIRKQY-WERGYDEVITPNIFNLNLWHQSGHALHYKDDMFS 431
                 55578*****************9.577899************************9975 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 8.4e-05
   TIGR00389 171 FkkllefkreklPFgvaqiGksfRnEispr.qgllRvrEFeqaEiefFvdPeek 223
                 F   +++  + lP   a++G  +RnE+s    gl Rvr F+q +  +F+  ++ 
  MMETSP1061-20121228|6340_1 453 FGSQIRSY-RDLPIRYADFGVLHRNELSGAlTGLTRVRRFQQDDGHIFCREDQI 505
                 55555444.579***************96538****************987554 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 1.9e-07
   TIGR00389 465 lkpkvaPikvlvlplvnkeelkeiakeiakaLrkeeiiikyddsgsiGkrYaraDei.GtpfavtiDfetleDetvtlReRdslkqvRvkieelvsalkkl 564
                  +++++P + +v+p+ +  ++ e a++i ++  + + ++++d s +  ++  r+ +i   +f + +  + +e+ tv +R R++     +k++++++++kkl
  MMETSP1061-20121228|6340_1 650 WPFWLSPRQAMVIPVHK--DFGEYAESIRQKTPQGNDVLDVDLSKATFQKKVRNAQIaQYNFQLVVGANEVENGTVNIRTRENKVEGEMKVDDMIEMFKKL 748
                 6899**********854..6************************99555555555551679*************************************985 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.1   6.7e-12   3.9e-09      38     171 ..     374     507 ..     344     530 .. 0.89
   2 !    5.9   0.1    0.0019       1.1     483     566 ..     664     746 ..     645     748 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 6.7e-12
   TIGR00409  38 GlynylPlalrvlekvenivreemnkagaievllpalqsaelWqesgRwdkygeellrlkDrkerefvLgpthEEvitdlvkneiksYkqlPvnlYqiqtKfRDEiRP.RfGllRgREFimKDaYsFhsdeeslk 171
                 G   ++P ++r+ +k+ + +r++  + g  ev+ p++ + +lW++sg   +y ++++ ++  +++e+++ p        +   +i+sY++lP+        +R+E+     Gl R R F   D+  F  +++  +
  MMETSP1061-20121228|6340_1 374 GSAFWMPHGTRIYNKLIEFIRKQYWERGYDEVITPNIFNLNLWHQSGHALHYKDDMFSFE-VEGQEWAMKPMNCPGHCLMFGSQIRSYRDLPIRYADFGVLHRNELSGaLTGLTRVRRFQQDDGHIFCREDQITQ 507
                 5567*******************************************************7.6789*******999999***************************986158*************99988766555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0019
   TIGR00409 483 vkdeeqkklaeevyselkakgvdvl.lDdrneraGvkfrdseliGiplavvvGkksldnkeiEvkkrrngekqlikkaelkevle 566
                 v++ +  ++ae ++++   +g dvl +D  ++ +  k+r+ ++    +++vvG ++++n+ +++++r+n+ + ++k++++ e+ +
  MMETSP1061-20121228|6340_1 664 VHK-DFGEYAESIRQKTP-QGNDVLdVDLSKATFQKKVRNAQIAQYNFQLVVGANEVENGTVNIRTRENKVEGEMKVDDMIEMFK 746
                 444.45677888877654.56666645667778888999999999**************************99999999887765 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   6.7e-10   3.9e-07     125     299 ..     339     508 ..     318     533 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 6.7e-10
   TIGR00414 125 evkkegekksfdfkpkdHvellekldlldferavkvagsrfvvlknkgaklerALinfmLdllekkgysevvvPvlvnkellsgtgqlpkfeedifk..vededlyLiaTaEvplanlh.aneileeeelpikyaavspcFRkEAGsaGkdtkGliRvHqFeKvElvkfvkpeesaee 299
                 ++ k++++ + + k++dH  l++k+dl+ f+  +   gs f   + +g ++ + Li+f  ++  ++gy+ev++P + n +l ++ g+  ++++d+f   ve ++ ++ +    p   l+   +i + ++lpi+ya ++  +R+E    G    Gl Rv  F+  +   f++ ++ ++e
  MMETSP1061-20121228|6340_1 339 KQLKVWQEMMEKAKERDHRRLANKQDLVMFNDLS--PGSAF--WMPHGTRIYNKLIEFIRKQYWERGYDEVITPNIFNLNLWHQSGHALHYKDDMFSfeVEGQEWAMKPM-NCPGHCLMfGSQIRSYRDLPIRYADFGVLHRNEL--SGAL-TGLTRVRRFQQDDGHIFCREDQITQE 508
                 56788999999*******************9765..36655..467899*********************************************9761155666666665.5565555505566666*****************5..3444.59999999999888888887776555 PP

>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.7e-07   9.8e-05     556     679 ..     186     314 ..     172     318 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.7e-07
   TIGR00344 556 nHsatHllhaalkkvlgehvkQaGslveakklrlD.fshkravtkeelkkvEdlvneqilenlqvkvelmdleeakkkgalalfgeky.......gekvRvvsvgdvsvelCgGtHvenTgeiglfkIvkee 679
                  Hs  H++  al +  g++++    l++      D    +  +++++ k +E+ v ++i+++ + +  ++  +ea +++a   f+ k+       g +  v + gd  ++lC G Hv++Tg+++ f   k++
  MMETSP1061-20121228|6340_1 186 WHSSAHMMGEALEHLFGSKLTIGPPLKSGFY--YDsYMGTDSIKDDDYKPIEKEVTSIIKKKQKFERMVITKDEALELFADNPFKVKIlstkvpdGTRTTVYRCGD-LIDLCRGPHVSHTGKVKAFAAAKHS 314
                 5777777777777777777765555554332..331344678999******************************999996666655554444666677799999*.7****************99877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 3011.75
//
Query:       MMETSP1061-20121228|6344_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1954.45
//
Query:       MMETSP1061-20121228|6343_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.27
# Mc/sec: 3700.58
//
Query:       MMETSP1061-20121228|6345_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 872.28
//
Query:       MMETSP1061-20121228|6347_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 628.52
//
Query:       MMETSP1061-20121228|6348_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1061-20121228|6349_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-29   99.7   0.0    1.9e-17   61.4   0.0    3.0  2  TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family


Domain annotation for each model (and alignments):
>> TIGR00654  PhzF_family: phenazine biosynthesis protein, PhzF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   4.6e-21   1.9e-17       3      90 ..     238     344 ..     236     388 .. 0.78
   2 !   34.3   0.0   8.2e-13   3.4e-09     210     295 ..     498     578 ..     415     581 .] 0.74

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 4.6e-21
   TIGR00654   3 vevykvdvFTsqpfkGNpvaVvldaed....lseeelQliAeeinySETaFllkp.....v..........sekadlrlRiFTPksEldlaGHaTvaslyallevtk 90 
                 +  y vd F s p+ GNp++Vvl  +d       + +Q++A+e n+ ETaF  +                 ++++ +++R+FTP++E+ l+GHaT+as  +l +++ 
  MMETSP1061-20121228|6349_1 238 YRCYIVDSFASAPGTGNPASVVLLRDDfdpaAKHKWMQKVAAEFNLAETAFCWPRggytgHndsadaiaffKNESHWNIRYFTPTVEMGLCGHATLASAAVLYQTLP 344
                 67899*********************9787667888***************986422222211111111113456689*********************99977654 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 8.2e-13
   TIGR00654 210 gksd.....legRmFaPvigivEDPvtGsasgalgaylkevldnekshditieqGkalgrdgklevtvkkegdnsekvkiaGtavlviegk 295
                 ++ +     +  R FaP  gi EDPvtGsa   lg y+ ++l+          + k +gr+  ++  +++ +  + kv+++Gta++ + g+
  MMETSP1061-20121228|6349_1 498 PETEglsidFMSRFFAPKAGINEDPVTGSAHCSLGPYFAKKLK----------KDKVVGRQMSVRSGIVECEVSPDKVTLTGTAITTMSGT 578
                 333223333889**************************99973..........3344566666666666666678899******9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2738.77
//
Query:       MMETSP1061-20121228|6351_1  [L=669]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 2759.40
//
Query:       MMETSP1061-20121228|6353_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   13.3   3.5     0.0033   12.9   2.5    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
  ------ inclusion threshold ------
       0.11   10.7   4.0       0.19    9.9   2.7    1.3  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   2.5   1.6e-06    0.0033     935     998 ..      52     117 ..      24     152 .. 0.46

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.6e-06
   TIGR00927 935 iaddeevkdetgeqelnaenqgeakedek.GvdgeggsdGG.dseeeeeeeeeeeeeeeeeeeeee 998
                  ++ +  +++t ++  +  + ++   +    vd++  +     seeeeee+++ e+e+e+e+e+e+
  MMETSP1061-20121228|6353_1  52 NNNINTINNNTINNSTTPRIMCNITAGAAaTVDNGVATKESsSSEEEEEEQQQREQEQEQEKEKEQ 117
                 222233334444444444444444333320333333332220334444433333333333333332 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.7   9.4e-05      0.19      58      94 ..      79     116 ..      62     124 .. 0.41

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 9.4e-05
   TIGR03685  58 aaapvaaaaaa..aaaaeaaeeekeeeeeeeeekeeeee 94 
                 aaa+v    a+  ++++e++eee+ ++ e+e+e+e+e e
  MMETSP1061-20121228|6353_1  79 AAATVDNGVATkeSSSSEEEEEEQ-QQREQEQEQEKEKE 116
                 222222222210011111111111.11122222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       297  (0.0724037); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.19s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 2089.07
//
Query:       MMETSP1061-20121228|6354_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 2016.79
//
Query:       MMETSP1061-20121228|6356_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.006   14.0   0.1      0.012   13.0   0.1    1.4  1  TIGR03306 altF1_A: alternate F1F0 ATPase, F0 subunit A


Domain annotation for each model (and alignments):
>> TIGR03306  altF1_A: alternate F1F0 ATPase, F0 subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1     3e-06     0.012      51     120 ..     352     421 ..     343     433 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3e-06
   TIGR03306  51 qnllevlvtgikeqiedvglkkprkylpflgtlflfiavanllsvipGyeaptGslsttaalavcvfvav 120
                 +++le l     ++++d +l+ p +++ +++ l lfi++  ++ v+p  +a tG  s   a+  +++ +v
  MMETSP1061-20121228|6356_1 352 RQILEDLFKIRADRLSDESLALPPTHFLIMTILTLFILLGYVINVLPTVDASTGNPSNESAVIFSLLSTV 421
                 67888899999999*********99999***************************999999877766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 2171.82
//
Query:       MMETSP1061-20121228|6360_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00027   16.6  14.4    0.00034   16.3  10.0    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0016   14.0  17.7     0.0019   13.7  12.2    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.23    9.3  20.5       0.06   11.2   2.4    3.1  3  TIGR02338 gimC_beta: prefoldin, beta subunit
       0.56    6.4  21.9       0.28    7.4   7.3    1.9  2  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
        2.3    4.8  11.2        3.5    4.2   7.8    1.2  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
        6.7    4.7  13.4        3.8    5.5   0.7    2.9  3  TIGR00293 TIGR00293: prefoldin, alpha subunit
        7.5    3.5   8.3         16    2.4   5.6    1.4  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3  10.0   5.8e-07   0.00034     331     467 ..      56     190 ..      40     206 .. 0.28

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.8e-07
   TIGR02168 331 kkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaele.rleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealee 467
                 k++ele++l+ +e++ +e++++  +l++++ e+++   e+e r+++ e +++++ +++ e e++  s  ++le  le+++e+le r +++++e +e   +l+++e +l+   +++++ e+ ++e + +l+++e  l++
  MMETSP1061-20121228|6360_1  56 KEKELERRLKIIETRENEIRKREVDLDERIMEFRERTGEFEVRMAQGESDVKQQIADFEEREKEGISCLKQLEdDLEQRKEDLETRIAEFEKEEKEGTGRLKQMEDDLA---TRIADFEKVEKEGTDRLNQMEDDLKT 190
                 2222222222222222222222222222222222222222222222222222222222222222222222222112222222222222222222222222222221111...11111111111111111111111111 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7  12.2   3.3e-06    0.0019     367     495 ..      57     186 ..      38     206 .. 0.30

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.3e-06
   TIGR02169 367 leelraeleevdkeaaelreelkelkekleklkeelnelkreldr.lleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelae 495
                 ++el+++l+ ++++ +e+r++  +l e++ + +e+  e +    +   + ++++    ++ k+ +  +++   +le+++e+l+ +i++ e++ ++    l+++e+ l  + +++ek+eke ++  ++++ 
  MMETSP1061-20121228|6360_1  57 EKELERRLKIIETRENEIRKREVDLDERIMEFRERTGEFEVRMAQgESDVKQQIADFEEREKEGISCLKQLEDDLEQRKEDLETRIAEFEKEEKEGTGRLKQMEDDLATRIADFEKVEKEGTDRLNQMED 186
                 2222222222222222222222222222222222222222111110112222222222222222222222222222222222222222222222222222222222222222222222222222211111 PP

>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.0    0.0026       1.5      66     103 ..      54      91 ..      46      98 .. 0.90
   2 ?   11.2   2.4    0.0001      0.06      67     107 ..     126     166 ..     121     169 .. 0.90
   3 ?   -0.6   0.0      0.47   2.8e+02      69      88 ..     178     197 ..     169     206 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0026
   TIGR02338  66 eevleeLeekketlelrvktlekQeerlrekleelqek 103
                 ++  +eLe ++ ++e r + + k e  l e++ e +e+
  MMETSP1061-20121228|6360_1  54 NKKEKELERRLKIIETRENEIRKREVDLDERIMEFRER 91 
                 56789***************************999986 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.0001
   TIGR02338  67 evleeLeekketlelrvktlekQeerlrekleelqekiqea 107
                 ++ ++Le++ke+le r+  +ek e++ + +l+++++++  +
  MMETSP1061-20121228|6360_1 126 QLEDDLEQRKEDLETRIAEFEKEEKEGTGRLKQMEDDLATR 166
                 6889******************************9988765 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.47
   TIGR02338  69 leeLeekketlelrvktlek 88 
                 ++ L++ +++l+ r+  +ek
  MMETSP1061-20121228|6360_1 178 TDRLNQMEDDLKTRIADFEK 197
                 34444444455555554444 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   3.5    0.0051         3      86     135 ..      54     103 ..      52     110 .. 0.69
   2 ?    7.4   7.3   0.00048      0.28      55     139 ..     101     189 ..      93     202 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0051
   TIGR03319  86 kqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqk 135
                 ++ke++l+r+ + +e +e+e++k+e +l+e+  e +e++ e e  +++ +
  MMETSP1061-20121228|6360_1  54 NKKEKELERRLKIIETRENEIRKREVDLDERIMEFRERTGEFEVRMAQGE 103
                 46777777777777777777777777777777777777777666655544 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00048
   TIGR03319  55 eakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeee....lekkekeleekekeleekeeeleellkeqkeeLe 139
                 +  ++vk++ +++e+  ke  + l++le+ l+q++e l+++ +++ek+e+e    l++ e++l+++ ++ e+ e+e ++ l++ ++ L+
  MMETSP1061-20121228|6360_1 101 QGESDVKQQIADFEEREKEGISCLKQLEDDLEQRKEDLETRIAEFEKEEKEgtgrLKQMEDDLATRIADFEKVEKEGTDRLNQMEDDLK 189
                 55667777778888888888899999999999999999999988887776422225666666666666666666666666666665554 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   7.8     0.006       3.5     120     238 ..      66     194 ..      50     204 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.006
   TIGR03794 120 vrekearekkflkskeaLeetigklreeeaaLsqevakqrqllsrklak...........lkrarillqqarkeq.ekrdeadkaeaeyelqtkadeeeletvvaklkqadlqlasvaekeletvearike 238
                 +   e+re++  k++  L+e+i + re++   +  +a+  + ++++ a+           lk+++  l+q +++  ++ +e +k e e     k+ e++l t +a +++ + + + + ++   ++++ri +
  MMETSP1061-20121228|6360_1  66 I--IETRENEIRKREVDLDERIMEFRERTGEFEVRMAQGESDVKQQIADfeerekegiscLKQLEDDLEQRKEDLeTRIAEFEKEEKEGTGRLKQMEDDLATRIADFEKVEKEGTDRLNQMEDDLKTRIAD 194
                 3..68899999999999***************999999999999998886665666666655555555554444435666666666666666677777777777755555555554445544455555444 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.7    0.0064       3.8      81     125 ..      57     101 ..      56     105 .. 0.90
   2 ?    4.6   2.4     0.012         7      81     118 ..     128     165 ..     114     176 .. 0.69
   3 ?    1.8   0.4      0.09        53      85     126 ..     150     191 ..     145     205 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0064
   TIGR00293  81 ekdleeAieilkkkieelekaieklqeelqelaseaqeieqelqq 125
                 ek+le  ++i++ + +e+ k+  +l e + e +++  e e  ++q
  MMETSP1061-20121228|6360_1  57 EKELERRLKIIETRENEIRKREVDLDERIMEFRERTGEFEVRMAQ 101
                 7999999************************99999887766665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.012
   TIGR00293  81 ekdleeAieilkkkieelekaieklqeelqelaseaqe 118
                 e dle+ +e l+ +i e ek+ ++ +  l+++++  ++
  MMETSP1061-20121228|6360_1 128 EDDLEQRKEDLETRIAEFEKEEKEGTGRLKQMEDDLAT 165
                 55666666777777777777777777777666665544 PP

  == domain 3    score: 1.8 bits;  conditional E-value: 0.09
   TIGR00293  85 eeAieilkkkieelekaieklqeelqelaseaqeieqelqqk 126
                  e   +lk+  ++l ++i + ++  +e +++ +++e+ l+++
  MMETSP1061-20121228|6360_1 150 KEGTGRLKQMEDDLATRIADFEKVEKEGTDRLNQMEDDLKTR 191
                 556666777777888888888888888888888888777765 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   5.6     0.028        16      34     145 ..      61     169 ..      46     191 .. 0.63

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.028
   TIGR03752  34 tadkalaelspeelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaae 145
                 +   + +e++ +e+++ +++ d      r    ++ e + ++a+ e++ +++ ++ e+ +k+  s  +++++ le+ k++l++++ + ++e ++ +++l+++++ l++ +a 
  MMETSP1061-20121228|6360_1  61 ERRLKIIETRENEIRKREVDLDERIMEFR---ERTGEFEVRMAQGESDVKQQIADFEEREKEGISCLKQLEDDLEQRKEDLETRIAEFEKEEKEGTGRLKQMEDDLATRIAD 169
                 45556666777777777777665443333...44555666777777777777777777777777777777777777777777777777777777777777777666644433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       337  (0.082155); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 607.15
//
Query:       MMETSP1061-20121228|6359_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-45  151.5   0.0    6.5e-45  150.7   0.0    1.4  1  TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase
     0.0074   14.2   0.0      0.014   13.3   0.0    1.4  1  TIGR03433 padR_acidobact: transcriptional regulator, Acidobacterial, PadR-family


Domain annotation for each model (and alignments):
>> TIGR00636  PduO_Nterm: ATP:cob(I)alamin adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.7   0.0   3.2e-48   6.5e-45       1     170 [.      79     275 ..      79     276 .. 0.95

  Alignments for each domain:
  == domain 1    score: 150.7 bits;  conditional E-value: 3.2e-48
   TIGR00636   1 ytktGDkGktklaggsrvsKdserveayGtvDElnsflGvalskl......keeelkeelekiqndlfdlgadlatksekk.....................kiteekvkfleeridkyreeleelkkFvlPGGtkaaaalhvaRtvaRRaERevvkllkeeeinekvlvylNRlSdllfvlArvvnkrkgkeevlw 170
                 yt++GD+G+ +l +g+r sK ++  +a+GtvDEl sf+Gva+s+l       + +l e+l  +   lfd+g+ +a +   +                      +++++v+ le++i++++e+l+el++FvlP G++aaa+l+vaRtv+RRaER+vv l+++     ++++ylNRlSd lfv+Ar+vn r+g+ee  +
  MMETSP1061-20121228|6359_1  79 YTRSGDTGTSQLGTGERRSKTDDAFAAMGTVDELCSFVGVAHSHLtstnadRYGDLPEQLLDVMSRLFDVGSHIAKPPPIHaskngnnddgppvfvpnglgdGFSSHHVDDLEDWIHEWTEDLPELTSFVLPTGSPAAASLQVARTVCRRAERTVVPLARAGVCDPNAMRYLNRLSDALFVAARWVNLRDGREEIEY 275
                 8******************************************988876666779********************976555567899**************99***************************************************************************************9998766 PP

>> TIGR03433  padR_acidobact: transcriptional regulator, Acidobacterial, PadR-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   6.9e-06     0.014      46      85 ..     250     289 ..     244     301 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.9e-06
   TIGR03433  46 LhrlekkgwiaaewgesennrrakfYrltaaGrkqLeeet 85 
                 L+rl ++ ++aa+w +  + r+   Yrl+a+G  qL++ +
  MMETSP1061-20121228|6359_1 250 LNRLSDALFVAARWVNLRDGREEIEYRLAASGAAQLATSA 289
                 89**********************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1768.65
//
Query:       MMETSP1061-20121228|6361_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   12.2   0.0       0.17   10.0   0.0    2.1  2  TIGR02976 phageshock_pspB: phage shock protein B


Domain annotation for each model (and alignments):
>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   4.2e-05      0.17       7      34 ..     172     199 ..     167     209 .. 0.79
   2 ?   -2.1   0.0      0.26   1.1e+03      41      54 ..     325     338 ..     321     339 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 4.2e-05
   TIGR02976   7 aiPlivfvifvallwlllhyrskrktaa 34 
                 +  l++++ f+ llwll +y +++k + 
  MMETSP1061-20121228|6361_1 172 VGSLLILLFFLWLLWLLWRYYRRSKGGG 199
                 56789999*************9998764 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.26
   TIGR02976  41 lalLeelsekakrl 54 
                 +++Le+ls++ +rl
  MMETSP1061-20121228|6361_1 325 EERLEDLSSHHNRL 338
                 6899******9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 2202.33
//
Query:       MMETSP1061-20121228|6365_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 521.67
//
Query:       MMETSP1061-20121228|6358_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2546.90
//
Query:       MMETSP1061-20121228|6364_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 868.93
//
Query:       MMETSP1061-20121228|6363_1  [L=840]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-71  238.9  30.3    1.2e-32  111.0   2.4    5.1  5  TIGR00926 2A1704: oligopeptide transporter, peptide:H+ symporter
    3.3e-20   70.4  17.0    2.8e-09   34.3   1.3    3.8  3  TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter)


Domain annotation for each model (and alignments):
>> TIGR00926  2A1704: oligopeptide transporter, peptide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.3   1.6      0.44     9e+02     408     533 ..      40      71 ..      18      87 .. 0.37
   2 !  111.0   2.4   5.7e-36   1.2e-32       4     132 ..      93     257 ..      90     265 .. 0.93
   3 !   21.1   0.2     9e-09   1.8e-05     135     197 ..     383     439 ..     377     448 .. 0.81
   4 !   51.0   0.1   8.4e-18   1.7e-14     296     359 ..     557     620 ..     549     633 .. 0.90
   5 !   74.1   0.4   8.7e-25   1.8e-21     576     661 ..     640     726 ..     620     735 .. 0.76

  Alignments for each domain:
  == domain 1    score: -4.3 bits;  conditional E-value: 0.44
   TIGR00926 408 esksgieskesskkpngddeldidlsadglagevsklkkevelekkkskvllvsqdglklyevaaktekaktekGelsirlvstlnkeggaialskeesesvednlsvdksekaklyvlepavnle 533
                 ++k++ ++++                                                                                               + ++++++++   +++++n++
  MMETSP1061-20121228|6363_1  40 KQKQKRTNTKR----------------------------------------------------------------------------------------------HRCSNNNTNTNTNTSTSTNTD 71 
                 22222222222..............................................................................................222222222222111111111 PP

  == domain 2    score: 111.0 bits;  conditional E-value: 5.7e-36
   TIGR00926   4 svffivgnefCerfsyyGmkavLvlYllnvlefseststvlfhaFtvlcYltPllGsiiaDsylGkfktilylsivYaiGqvllslgsikllgs....................................slhklldlvGLllialgtGgikPCvsaFggdqFee 132
                  v+ i++ e  er++y+G ++ LvlY+ n lefsests +l  a   l Yl+P+lG+i+aD   G++ ti+  s+vYa+G  l++lg+  l  +                                     +  +l++vGL+l  lgtGgikPCvsaFg+dq  +
  MMETSP1061-20121228|6363_1  93 VVLSILVTETAERIAYFGFRSGLVLYFANGLEFSESTSVALVAAVHGLSYLSPVLGAILADNGWGRYNTIFRFSLVYALGLCLIALGARGLDVDthtdldvdiqnlnhvyadaeldadldaddmqtqsnvLVARVLSFVGLTLACLGTGGIKPCVSAFGADQVVL 257
                 567799*********************************************************************************965544445679***************************99988999****************************866 PP

  == domain 3    score: 21.1 bits;  conditional E-value: 9e-09
   TIGR00926 135 ekllskfFslFYfainaGslistiitPilRasvkclgqdsCyplaFGvPaiLmival.ivFlaG 197
                 e ll +fF  FY+ in G+l+s    Pi+R         + ++  F vPa  m+ a  +v ++ 
  MMETSP1061-20121228|6363_1 383 EPLLREFFNSFYVCINVGALVSFATIPIVR-------ARHGFAASFLVPACFMVTAXaLVLVTA 439
                 567889************************.......345688999999999999862444444 PP

  == domain 4    score: 51.0 bits;  conditional E-value: 8.4e-18
   TIGR00926 296 eilPdqmqvlnavlililiPlfdvivYpliaklgirltsLrkmavGglLaalaFlvaaivqlkv 359
                   +P+q   ln++ i+il+P+fd i+Yp +a  ++ + +Lr+m  G++L+a+aF+++a+++  +
  MMETSP1061-20121228|6363_1 557 GFQPEQSLLLNPLEIMILVPIFDKILYPWLAAKRVDIRPLRRMEYGMFLTAIAFVLSALLERAI 620
                 579********************************************************99776 PP

  == domain 5    score: 74.1 bits;  conditional E-value: 8.7e-25
   TIGR00926 576 spnsvsilwqlPqyvvltaaevlfsvtGleFaYsqaapslksvlqalWLltvaiGnlivvviaelklle.kqavefvlfaslllvvi 661
                  p +vs++wq+Pq+ vlt++e+l+ vtGleFaY qa+  +++++ a++Llt+aiG+ +  +++ + + + +  + ++  a  +l  +
  MMETSP1061-20121228|6363_1 640 LPKTVSLAWQIPQITVLTVGEILLNVTGLEFAYGQAPERMQALILAVYLLTTAIGDGLGTLLFATVFEHtSPITTLLTCAVCMLANL 726
                 4789****************************************************9977666543322033334444444555555 PP

>> TIGR00924  yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   1.3   1.4e-12   2.8e-09      13      99 ..      95     179 ..      88     185 .. 0.92
   2 !   22.5   0.1   5.4e-09   1.1e-05     132     192 ..     379     439 ..     378     477 .. 0.79
   3 !   20.2   2.1   2.7e-08   5.5e-05     320     462 ..     566     729 ..     552     734 .. 0.67

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 1.4e-12
   TIGR00924  13 atlffvelWerfsyyGvqgiLavylvaqagLGldkelataifgaysalvylltivGayfgDrvlGakktlvlagivvvlGhlvlala 99 
                   + ++e  er +y+G ++ L++y+ +  gL +++++++a+++a  +l yl+ ++Ga ++D  +G   t++  + v  lG  ++al 
  MMETSP1061-20121228|6363_1  95 LSILVTETAERIAYFGFRSGLVLYFAN--GLEFSESTSVALVAAVHGLSYLSPVLGAILADNGWGRYNTIFRFSLVYALGLCLIALG 179
                 568899*****************9975..6**************************************************9998875 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 5.4e-09
   TIGR00924 132 erdddPrrDggftvfymainiGaliaplligviaenvgyhlgfalaavGlalgllrfllgr 192
                 ++dd+P++   f  fy+ in+Gal++  +i+++    g+  +f + a  ++ +    l++ 
  MMETSP1061-20121228|6363_1 379 DGDDEPLLREFFNSFYVCINVGALVSFATIPIVRARHGFAASFLVPACFMVTAXALVLVTA 439
                 67899**************************************999998887655444444 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 2.7e-08
   TIGR00924 320 lnplwvvvlspvlaav.ytklgrkgkepktplkfalglllvgasfltfv...........aslgfaeagtk.......aaaaflvliylvqtlGeLmispvgLsvstkiaPqklksqilglwfLavalgsllgGllaeagvdaqdktg..vfaklalvavvvgv 462
                 lnpl +++l p++  + y  l  k  + +   ++  g++l++++f++ +           as g+ + ++k       ++ a+ +  + v t+Ge+++   gL ++   aP+++++ il+++ L+ a+g+ lg ll+ +  +    +   +  ++ ++a ++g+
  MMETSP1061-20121228|6363_1 566 LNPLEIMILVPIFDKIlYPWLAAKRVDIRPLRRMEYGMFLTAIAFVLSAlleraivaqakASGGVEDKDQKkeelpktVSLAWQIPQITVLTVGEILLNVTGLEFAYGQAPERMQALILAVYLLTTAIGDGLGTLLFATVFEHTSPITtlLTCAVCMLANLAGF 729
                 6888888888888654366677766777766777788888888886543111111111001112222222112222214667777778899*********************************************9888776655543344555566666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (840 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       267  (0.0650902); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 2578.39
//
Query:       MMETSP1061-20121228|6366_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       267  (0.0650902); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 2165.33
//
Query:       MMETSP1061-20121228|6368_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 551.95
//
Query:       MMETSP1061-20121228|6371_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|6369_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-31  105.4   0.0    4.7e-10   37.4   0.0    3.8  3  TIGR02246 TIGR02246: conserved hypothetical protein
  ------ inclusion threshold ------
       0.45    7.1   3.2       0.35    7.5   0.1    2.2  3  TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
        1.2    7.6   9.5        6.2    5.3   0.1    3.5  3  TIGR03769 P_ac_wall_RPT: actinobacterial surface-anchored protein domain


Domain annotation for each model (and alignments):
>> TIGR02246  TIGR02246: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   4.5e-13   6.2e-10       3     127 ..      94     215 ..      93     216 .. 0.88
   2 !   37.4   0.0   3.4e-13   4.7e-10       3     127 ..     226     344 ..     225     345 .. 0.89
   3 !   26.3   0.0   9.3e-10   1.3e-06       3     127 ..     356     476 ..     355     477 .. 0.85

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 4.5e-13
   TIGR02246   3 eeairaLvarleaAwaagDaeafAnlFteD..gvfvtvpGq.klkGreaIaaaleaflekpvkgtkvevdvievrvlgpdlaivhaeatitatgkkraaaraavrltlvavkadgrWllaadqntpvr 127
                 e+++raL+  +++A+a+gD   +A+ ++    +v+++++++ ++     I+ +++ fl+k+++g  ++++   +r +g+  a ++ ++ +t+  ++ a+ + +  +t  +v +dg W +a++++++++
  MMETSP1061-20121228|6369_1  94 EKEVRALFSLWNNALATGDSRLVASRYATKsgAVLLPTVSDtPRTDYASIKDYFDGFLKKQPQGEILDGN---IR-IGNGWAQDAGIYEFTMGAEGGAKVKGRYTYT--YVMEDGIWKIAHHHSSVMP 215
                 789************************9643389999999977788899**************8555555...54.8***************999999988888888..888*************997 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 3.4e-13
   TIGR02246   3 eeairaLvarleaAwaagDaeafAnlFteDgvfvtvpGq.klkGreaIaaaleaflekpvkgtkvevdvievrvlgpdlaivhaeatitatgkkraaaraavrltlvavkadgrWllaadqntpvr 127
                 +e+++ L+  +++A+a+gD + +An ++  gv+++++++ ++   + I+ +++ fl k ++g    + +    ++g + a +  ++ +t+   + + a++++r+++v+  + g+W +a+++++ ++
  MMETSP1061-20121228|6369_1 226 KEEVQGLFHLWNDALATGDSALVANRYASKGVLLPTVSDvPRDDFDSIKDYFDSFLLKEPQG----KILESFVTIGTNWAQDVGIYEFTM---GATGAKVKARYSFVYTYEAGQWKIAHHHSSQMP 344
                 589************************************778889****************6....334445567888998888888876...6788999**********************9987 PP

  == domain 3    score: 26.3 bits;  conditional E-value: 9.3e-10
   TIGR02246   3 eeairaLvarleaAwaagDaeafAnlFteDg..vfvtvpGq.klkGreaIaaaleaflekpvkgtkvevdvievrvlgpdlaivhaeatitatgkkraaaraavrltlvavkadgrWllaadqntpvr 127
                 +e++r L++ +++A+a+ D++++A+ +  +    +++++++ ++   + I ++++ f +k ++g ++  ++++   +g + a++  ++ +t+   + +  ++++r+++v+  + g+W +a+++++ ++
  MMETSP1061-20121228|6369_1 356 NEEVRGLFKLWNDALATLDPAQVATRYSVETapCLLPTVSDvPRTDYDSIMSYFVDFCKKEPQG-EILESYVT---VGHNWAMDDGIYEFTM---GATGDKVKARYSFVYTFENGEWKIAHHHSSQMP 476
                 589**********************9976652246778888678889****************6.55555554...5899999999999886...567788999********************9987 PP

>> TIGR00420  trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.1   0.00026      0.35     203     258 ..     143     201 ..     138     223 .. 0.84
   2 ?   -1.7   0.1      0.16   2.2e+02     203     247 ..     273     319 ..     269     339 .. 0.70
   3 ?   -2.0   0.0       0.2   2.7e+02     214     240 ..     417     445 ..     403     463 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00026
   TIGR00420 203 fkdflkkylpvk.kGeiidvdtek..vigeHdGlwfytiGqrkGlslggakepwfvvek 258
                  kd+++ +l+++ +Gei d + +    +++  G++ +t+G   G +++g     +v+e 
  MMETSP1061-20121228|6369_1 143 IKDYFDGFLKKQpQGEILDGNIRIgnGWAQDAGIYEFTMGAEGGAKVKGRYTYTYVMED 201
                 68889999988526999986654322899**********************999*9985 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.16
   TIGR00420 203 fkdflkkylpv.kkGeiid..vdtekvigeHdGlwfytiGqrkGlslg 247
                  kd+++ +l +  +G+i +  v     +++  G++ +t+G   G +++
  MMETSP1061-20121228|6369_1 273 IKDYFDSFLLKePQGKILEsfVTIGTNWAQDVGIYEFTMGA-TGAKVK 319
                 56777777654267999873334445899999******996.455555 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.2
   TIGR00420 214 kkGeiid..vdtekvigeHdGlwfytiGq 240
                  +Gei +  v   + ++  dG++ +t+G 
  MMETSP1061-20121228|6369_1 417 PQGEILEsyVTVGHNWAMDDGIYEFTMGA 445
                 46777652233445899999******995 PP

>> TIGR03769  P_ac_wall_RPT: actinobacterial surface-anchored protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.4      0.02        27      12      38 ..     174     196 ..     172     199 .. 0.77
   2 ?    3.2   0.2     0.021        29      13      25 ..     305     317 ..     298     328 .. 0.82
   3 ?    5.3   0.1    0.0045       6.2      13      39 ..     437     460 ..     431     461 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.02
   TIGR03769  12 PGtYtltvratatltdGkvssdpqtlt 38 
                 +G+Y++t+ a +    G+++ +  t+t
  MMETSP1061-20121228|6369_1 174 AGIYEFTMGAEG----GAKVKGRYTYT 196
                 8*********99....66666666666 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.021
   TIGR03769  13 GtYtltvratatl 25 
                 G+Y++t+ at+ +
  MMETSP1061-20121228|6369_1 305 GIYEFTMGATGAK 317
                 9*********954 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0045
   TIGR03769  13 GtYtltvratatltdGkvssdpqtltf 39 
                 G+Y++t+ at+   d  ++  ++++tf
  MMETSP1061-20121228|6369_1 437 GIYEFTMGATG---DKVKARYSFVYTF 460
                 9**********...5556777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 2049.96
//
Query:       MMETSP1061-20121228|6367_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1594.43
//
Query:       MMETSP1061-20121228|6380_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 955.35
//
Query:       MMETSP1061-20121228|6379_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2389.46
//
Query:       MMETSP1061-20121228|6383_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|6385_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 359.97
//
Query:       MMETSP1061-20121228|6387_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 597.09
//
Query:       MMETSP1061-20121228|6376_1  [L=1358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.14s 00:00:00.71 Elapsed: 00:00:00.49
# Mc/sec: 3657.98
//
Query:       MMETSP1061-20121228|6388_1  [L=808]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-05   20.2   0.0    0.00015   19.2   0.0    1.4  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
  ------ inclusion threshold ------
      0.016   11.9   0.0       0.19    8.4   0.0    2.1  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      0.079    9.5   0.0        0.2    8.2   0.0    1.6  2  TIGR02759 TraD_Ftype: type IV conjugative transfer system coupling protein TraD


Domain annotation for each model (and alignments):
>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   1.1e-07   0.00015      31      76 ..     457     503 ..     443     513 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.1e-07
   TIGR03420  31 el.aeakaerllylwGesgsGksHLLqAacaaaeeagksaiylplke 76 
                 +  +++++++ +y+ G+ g+Gks  L +++a+a++ g+ ++ylp  +
  MMETSP1061-20121228|6388_1 457 NNnNNNNNNQKIYVHGKRGTGKSAVLASIVASARRSGCIVMYLPDGD 503
                 3346789999*********************************9665 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0   0.00014      0.19      36      65 ..     461     490 ..     435     494 .. 0.84
   2 ?    0.8   0.0     0.027        37     118     145 ..     605     632 ..     591     639 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00014
   TIGR02928  36 rgsrpsnvliyGktGtGKtavtkkvlkele 65 
                 ++++ +++ + Gk GtGK+av   ++  ++
  MMETSP1061-20121228|6388_1 461 NNNNNQKIYVHGKRGTGKSAVLASIVASAR 490
                 4677889**************999887766 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.027
   TIGR02928 118 eelvkeleeredsliivLDEiDklvkke 145
                 ++l ++  ++++ +++v+DE++ l+ ++
  MMETSP1061-20121228|6388_1 605 HHLLHTNTKTDKKFVLVMDEFNCLFDHH 632
                 6678888999************998554 PP

>> TIGR02759  TraD_Ftype: type IV conjugative transfer system coupling protein TraD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0   0.00014       0.2     173     205 ..     462     494 ..     433     511 .. 0.87
   2 ?   -3.0   0.0      0.35   4.8e+02     390     419 ..     599     628 ..     588     630 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00014
   TIGR02759 173 esEvqhllidGttgsGKsealrklleairkrgd 205
                 + + q++ ++G  g+GKs +l +++ ++r+ g 
  MMETSP1061-20121228|6388_1 462 NNNNQKIYVHGKRGTGKSAVLASIVASARRSGC 494
                 6788***********************998874 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.35
   TIGR02759 390 WlsiAvksllslepnddrRiWlilDElpsL 419
                   s+ v+ ll  +  +d++  l++DE   L
  MMETSP1061-20121228|6388_1 599 CYSVVVHHLLHTNTKTDKKFVLVMDEFNCL 628
                 458899999999**************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.13s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 2539.22
//
Query:       MMETSP1061-20121228|6389_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1334.56
//
Query:       MMETSP1061-20121228|6394_1  [L=1623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.7e-201  668.1   2.5   3.6e-124  413.6   2.2    3.9  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   1.1e-112  375.6   5.0    6.2e-71  237.1   0.0    4.3  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      7e-89  296.7   0.0      7e-52  174.4   0.0    2.3  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    2.6e-88  294.8   5.5    3.7e-54  182.0   0.0    3.6  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    8.8e-84  279.8   1.0    6.5e-57  191.0   0.0    2.4  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    8.8e-82  273.3   0.2      4e-46  155.4   0.0    3.5  3  TIGR00958 3a01208: antigen peptide transporter 2
    4.5e-81  271.2   2.6    4.3e-45  152.5   0.0    3.3  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    6.1e-77  257.2   6.0    8.6e-44  147.9   1.9    3.3  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    4.5e-76  254.3   0.4      1e-41  140.9   0.0    2.7  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.9e-76  254.4   3.1    1.4e-49  167.1   0.0    3.4  3  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    8.2e-76  253.7   7.8    4.1e-50  168.8   0.0    3.7  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    4.2e-75  251.2   2.3    5.4e-50  168.2   0.0    3.1  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.4e-67  226.6   0.1    1.8e-41  140.2   0.0    3.6  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.2e-59  200.3   0.1    1.5e-41  140.6   0.0    2.4  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    2.7e-44  149.2   0.3    1.9e-25   87.5   0.0    3.4  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.6e-43  146.6   0.0    1.1e-25   88.3   0.0    2.3  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.2e-40  135.9   0.0    2.7e-19   67.4   0.0    2.7  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    4.1e-40  135.6   0.1    2.1e-20   71.1   0.0    2.6  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      5e-40  135.2   0.1    9.5e-26   88.5   0.0    2.6  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    6.5e-39  131.6   1.6    6.7e-23   79.1   0.0    2.4  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
      2e-38  130.3   1.3    2.6e-20   70.7   0.0    3.1  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    6.9e-38  128.3   0.0    1.9e-24   84.4   0.0    3.3  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    9.6e-37  124.3   0.0    7.1e-19   65.9   0.0    2.8  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.3e-36  124.0   0.1      1e-24   85.2   0.0    3.4  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    4.5e-36  122.3   1.5    8.6e-18   62.5   0.3    4.1  3  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    4.1e-35  119.4   0.0    1.8e-21   74.5   0.0    2.4  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.7e-34  117.3   5.4    3.7e-20   70.3   0.1    3.7  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.1e-33  112.6   2.6      3e-21   73.6   0.0    3.2  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.7e-33  112.4   1.9      3e-16   57.5   0.0    3.2  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      5e-33  112.4   1.4    1.1e-18   65.2   0.0    2.9  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    6.7e-33  112.1   1.0    5.1e-21   73.1   0.1    3.4  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.6e-32  110.9   0.1    2.2e-20   71.2   0.0    3.3  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    3.2e-30  103.0   0.5    2.3e-15   54.4   0.0    4.2  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.3e-30  103.2   1.0    2.6e-15   54.4   0.0    2.8  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    4.1e-29   99.2   1.9      1e-15   55.5   0.2    3.6  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.3e-28   97.9   0.6    2.8e-18   63.9   0.0    2.6  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.3e-28   97.3   0.2    7.5e-14   49.5   0.1    2.4  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.3e-27   94.5   0.4    3.7e-12   44.0   0.0    4.0  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    6.4e-27   92.3   0.0    1.8e-14   51.7   0.0    3.6  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.6e-26   90.6   2.3    7.3e-11   40.0   0.3    4.0  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    7.2e-26   88.6   1.3    5.6e-12   42.8   0.0    3.8  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    8.7e-26   88.5   1.4    7.9e-16   56.0   0.0    3.2  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    6.8e-25   85.4   0.1    1.5e-11   41.3   0.0    3.1  4  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.2e-24   84.7   0.1    1.7e-11   41.5   0.0    2.6  2  TIGR01288 nodI: nodulation ABC transporter NodI
      2e-23   80.8   1.7    1.9e-11   41.4   0.8    3.2  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.6e-23   80.0   4.1    1.5e-15   54.4   0.2    3.3  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    3.6e-23   80.1   0.1    3.2e-11   41.0   0.1    2.8  2  TIGR01978 sufC: FeS assembly ATPase SufC
    2.4e-22   77.6   0.0    3.8e-13   47.4   0.0    3.2  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.2e-21   75.2   0.1    4.8e-15   53.7   0.0    3.3  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    8.2e-21   72.6   0.1    7.7e-14   49.8   0.0    3.2  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.9e-20   70.2   1.1    4.7e-12   43.1   0.1    3.3  2  TIGR00955 3a01204: pigment precursor permease
    3.9e-19   66.5   0.3    5.1e-10   36.4   0.0    4.1  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    3.6e-16   57.2   0.1    3.3e-06   24.6   0.0    3.4  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
      1e-15   55.1   0.0    3.2e-07   27.1   0.0    3.4  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    2.2e-14   49.1   0.0    2.5e-12   42.3   0.0    2.2  2  TIGR01257 rim_protein: rim ABC transporter
    8.9e-11   38.5   4.0     0.0017   14.4   0.1    4.1  4  TIGR00630 uvra: excinuclease ABC subunit A
    6.5e-10   35.1   3.1     0.0011   14.5   0.2    3.2  3  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.6   2.2    5e-126  3.6e-124     266    1264 ..     210    1314 ..     149    1329 .. 0.79
   2 !  246.3   0.0   1.4e-75     1e-73    1252    1515 ..    1335    1603 ..    1321    1608 .. 0.90

  Alignments for each domain:
  == domain 1    score: 413.6 bits;  conditional E-value: 5e-126
   TIGR00957  266 kvkvvyakkdpakpkesskldaneeveallvkspqkerkp.sllkvlyktfgsyfllsflfkaiqdllsfagpkllellikfv.ndrkapdwqgylytallfvsallqtlvlqqyfhiifvsgvriktavvgavyrkal........vit...........n.....sarksstvgeivnlmsvdaqrfmdlatylnllwsaplqvilalyllwlnlgpsvlagvavmvllvplnavvavktktyqvaqmkskdnriklmneilngikvlklyawelafkdkvlairqeelkvlkksaylaavgtftwvctpflvalitlavyvtvdennildakkafvslalfnilrlplnilpmvisslvqasvslkrlriflsqeelepdsierrsikdgegnsitvknatftward...........epptlngltlsipegalvavvgqvgcgkssllsallaemdkv..............eg..........kvalkgsvayvpqqawiqndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysd..adiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivl......s...dgkis...emgsyqelldrdgafaeflrtyasaedeldaeddg......vasvsaedkeaklvedgll.......................vtdvvgkqlqrqlsasssdsedtsrhlsssaelq.kaeakeetwklmeadkaqigqvklsvywdyakaiglfitll.sillflcnsvsalasnywlslwtdda.vvdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivil.latplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsiva.nrwlavrlelvgncivlfaalfav.isrs.slsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetek 1264
                   v   +++ d a+ k   +l+ ++++     k   k+ +   llk++++   s +l + + ++i+ ++      l+  +++ + + ++ap    +    ll    +l+ +  +q+fh +     ri+ +v g ++ k+l        v+t           n     s +k+   g ++nlm  da  +   a  +  lw  plq+++  yll++ lg sv  g+av++ ++p n++v          +  ++ +r k  ne +  +k+lk+ +we  f d ++  r++el+  +    + av +      p lv ++tl+ y +    + + a + f +++lfn lr+pl + pm+i slv    sl+r+  +l+ eel p      + +dg g  i +k ++f w+ +           + p+l  ++l++  g +vavvg+vg gks+l+ a+l+e+  v              e           +v+l+g v y  q+aw+ + +lr+ i+fg++ +e++y +++    +  d+       + ++gekg  lsggq+ rv+lara+y d  + + +ldd l+a+da v+  +fe+vi      k+ + ilvt   s   + d ++++      s   d + s   ++g+y+ell+r  a+  f  ++ ++++e  a   +       ++ s  d ++ +v  g                             +++ + r++ +   + +  s+  +s+ +   k+ +k e++ +  +dk ++  v ls y  y++a+g  + ++ ++  f   + + +  ++ +s wt+ a  +  t +     l+  a   i+  + + + s++  + g+ as   h  ++ +v+r+pm+ff+ tpsg+++ rf kel++vd  l+e +  +l  +++v ++ + +  + +p + v +   + ly+   + +  ++r++kr e  +rsp+++hf e+l g+ vir+    ++       ++ + + +++ ++ a +rwl+v+le +gn +v+++a+ +v +sr   l +g  g  ++ sl +t  + w vr  + le+++++v+r+ e ++ + 
  MMETSP1061-20121228|6394_1  210 AVDSLMGTYDVARTKARHRLEEQKQQALYSNKDGVKNSESlVLLKAIVRNQKSLLLTTGILRLINTFVQAFPSLLVARFLRSIeAGPTAPIQESFRAVILLVAVLCLKMITENQFFHNVVNMATRIRGSVEGLIFDKSLrlpeggsgVLTkhvggkktsgaNgkakeSPKKALGSGGVLNLMQSDASNIESAAMQVHTLWDGPLQIMIYTYLLFQCLGSSVAWGLAVLLSVIPTNSIVLRISDRLARLENEARSARTKRTNESITHMKLLKVQSWEKVFADDIKKHRRDELNRHRMRGVVRAVNSAISNAVPALVLVVTLTAYAKTG--KPIKASTIFTAISLFNQLRYPLFFYPMLIDSLVIGRNSLRRIASYLTSEELTPYVQTLPPKSDG-GGEIEIKHGSFLWSTSnqikdgevappDSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVpkivvesnidsdakEStnpvdlmsrpEVTLHGNVGYCSQEAWVPKGTLRDAIVFGRDYDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYGDqnTKVLILDDCLAALDARVGSIVFERVIKRAKASKA-ATILVTNDPSLPRRCDRVVLMgssstkSsavDSNCStmiDVGTYDELLARGHALRSFSSEHEPSDHEAPAHRVHesskkiHTQHSPGDADTIRVVGGYKlgsndtdhschadpdvrvdmknsPDLLAERVIPREVDEEINNIDTSSNSTDSTTKPHpKSRSK-ESGLVSTDDKMTTQAVPLSTYMGYLRAVGSPVLVIgMVASFAVAEGARFFQQFTVSKWTEMAgSTSMTSALGGHYLNNLAYAAIVASLFLWLRSFSTMLVGLNASTFYHNRMVASVFRAPMAFFDATPSGQILSRFGKELETVDRALPESVASVLYCFLQVSSTALALSgVISPAMVVPLSFAGALYIRTMKRFRPAARDMKRSEQRTRSPIFTHFGEALRGTEVIRSIPGAKKTWSTRHRRLADINLSVFSTVKAlDRWLSVNLEAIGNSMVFITAVSSVfLSRAgRLHSGSAGWGLTQSLAITGLMAWAVRNLTMLESQMMSVQRVTEITDIDA 1314
                  4555566677777777777776665555555555555543257888888888888888888888887765444444555555515678888777777777777889*******************************9955555555555222222222221211113356667899***********************************************************98777777777778899*********************************************************************99865..4589*************************************************87666666666.779**********875223333332224589**********************************863322223222222222112222223333689*************************************9999999999998889999************************862267999*********************98777665.559*******99999*99999432222022223344222569***************99998887776544333000000344455555555555555599*************998877752223444455666555555555555555555544155555.88999999*********************86655415556888888999999*******98844444555566677777777899999************************************************************************99987654313344444444555779987766667789*******************************98888777777776666666666665439*******************999845886359*****************************************987654 PP

  == domain 2    score: 246.3 bits;  conditional E-value: 1.4e-75
   TIGR00957 1252 averlkeysetekeapwqieetappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrines.aegeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsa..lpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfed..ctvltiahrlntimdytrvlvldkgevaefdapsellqqr.gifys 1515
                  a e lk  se    a    e++   ++wp +g v f+n s++y +   lvl+++++++  g  +g+vgrtg+gkssl l+lfri e   +g i idg++i  + + +lr  l+iipqdpvlf+g+l  nld  ++ + +++w ale a   d+v       +l+ e +egg nls gqrql+claral++k+kilvldeat++vd +td+ +q tir +f +   +v+t+ahrl+t++ y ++ vl +g v e+++ps+ll+ + g f s
  MMETSP1061-20121228|6394_1 1335 AGEALKLPSELGLRASPLTENALLADGWPWKGGVSFKNVSMKYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIePKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDATGKATPDDMWKALEAASP-DLVRHfkTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEkgVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNIKnGEFRS 1603
                  5677777777777777788888899************************************************************96269********************************************************9863.34433013469**********************************************************6523789*********************************9854266655 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   1.0   2.5e-12   1.8e-10     178     380 ..     384     586 ..     219     595 .. 0.87
   2 !   97.5   0.1   1.2e-30   8.8e-29     439     621 ..     629     838 ..     623     844 .. 0.84
   3 !  237.1   0.0   8.6e-73   6.2e-71     881    1446 ..    1006    1602 ..     950    1618 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 2.5e-12
   TIGR01271 178 tgqlvsllsnnlnkldeglalahfvwiaplqvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycweeamekiienirqvelkltrkvayvryfsssafffsgllvvvlsvvpyali.kgiilrrifttisycivlrmtvtrqlpsaiqtwydslgairkiedflqkee 380
                  g ++ l+ ++   ++ +    h +w  plq+++   l+++ l  s+  gl++l+ +   ++++ +   +         s r   t e i  ++ +k+ +we+++   i++ r++el+  r  + vr  +s+       lv+v+++  ya + k i+   ift+is    lr  +   +p+ i+        +r+i  +l+ ee
  MMETSP1061-20121228|6394_1 384 SGGVLNLMQSDASNIESAAMQVHTLWDGPLQIMIYTYLLFQCLGSSVAWGLAVLLSVIPTNSIVLRISDRLARLENEARSARTKRTNESITHMKLLKVQSWEKVFADDIKKHRRDELNRHRMRGVVRAVNSAISNAVPALVLVVTLTAYAKTgKPIKASTIFTAISLFNQLRYPLF-FYPMLIDSLVIGRNSLRRIASYLTSEE 586
                 5677889999999999999999*****************************9987666666666666666555566677889999***********************************************999999999999*****965499************999**9986.589999888888888999999998887 PP

  == domain 2    score: 97.5 bits;  conditional E-value: 1.2e-30
   TIGR01271 439 tpvlknislklekgqllavagstgsgkssllmmilgelep...........segk.............ikhsgrisfspqvswimpgtikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdad..lylldspfsyldvvtekeifesclckllankt.rilvtsklehlkkadkilllh 621
                 +p l +++lk++ g+++av g  gsgks+l+  +lgel p           s+ k             +   g + +++q +w+  gt++d i+fg  yde ryt  +    +++dia  +   ++ +ge g +lsggqrar++lara+y d +  + +ld  ++ ld      +fe+ + +  a+k+  ilvt      +++d+++l+ 
  MMETSP1061-20121228|6394_1 629 SPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPvpkivvesnidSDAKestnpvdlmsrpeVTLHGNVGYCSQEAWVPKGTLRDAIVFGRDYDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYGDQNtkVLILDDCLAALDARVGSIVFERVIKRAKASKAaTILVTNDPSLPRRCDRVVLMG 838
                 699***********************************985555544443333332222222221122344699****************************************************************************9865227889**********************99999637999*9999999999999875 PP

  == domain 3    score: 237.1 bits;  conditional E-value: 8.6e-73
   TIGR01271  881 vaaslvglflisdlasatnsd.kqdsanasspdsskaviits..tsayyilyiyvgvadsllalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivl.gaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvraf.grqsyfetlfhkalnlhtanwflylstlrwfqlridii..fvlffiavvfiaiatn.degegevgiiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqee.skpkkstkky..................qlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrllste..geiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvieqfp..dkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsn..ctvilsehrveallecqqflviegssvkqydsiqkllneas.llk 1446
                  v + ++++ ++++ a+a +    q+ + ++ ++ + +  +ts  + +y     y ++  sl+    lr +  +   l  s   h++m+ sv++apma ++   +g+il rf k++ ++d  lp ++  ++   l v   a+a   v+ p ++v       ++i     f  +++++k+ e  +rspif+h+  +l+g   +r++ g +  + t   +  ++  +++    +  rw+ + ++ i   ++f++av  + ++     + g  g  lt ++ i++ + wav     +++ m sv+rv    d+ ++e +k  ++tk +                   l    + en  + + wp +g ++ k++++ky  +   vl+++++sv +g ++g++grtgsgks+ll +l+r+++ e  g i+idg+   sv+++k r ++ +ipq   +++gt+  nld   + + +++wk  e      ++  f   + l+  + +gg  ls+g +ql+clar+++ k+kil+lde ++ +d  t q ++ t+++ f +   +vi   hr+++++  +++ v+ + +v +y s   lln +   ++
  MMETSP1061-20121228|6394_1 1006 VGSPVLVIGMVASFAVAEGARfFQQFTVSKWTEMAGSTSMTSalGGHYLNNLAYAAIVASLFL--WLRSFSTMLVGLNASTFYHNRMVASVFRAPMAFFDATPSGQILSRFGKELETVDRALPESVASVLYCFLQVSsTALALSGVISPAMVVPLSFAGALYIRTMKRFRPAARDMKRSEQRTRSPIFTHFGEALRGTEVIRSIpGAKKTWSTRHRRLADINLSVFSTVKALDRWLSVNLEAIgnSMVFITAVSSVFLSRAgRLHSGSAGWGLTQSLAITGLMAWAVRNLTMLESQMMSVQRVTEITDIDANEdNKDLEKTKMQmpremdmagealklpselGLRASPLTENALLADGWPWKGGVSFKNVSMKYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpkGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDATGKATPDDMWKALEAA-SPDLVRHFKtlGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEkgVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNIKNgEFR 1602
                  555666666666655555443123334343333333333443114566666677777666543..567777777788999************************************************999888775267888889***98887666667788888889999******************************9857777788776666666666666666777********9943356666766555554414578******************************************9865514444444444566677777766544433233445789999*************************************************************98755599***************************************************87665.56778888633689*********************************************************873367899****************************999996541454 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   3.6e-37   2.6e-35     266     675 ..     405     838 ..     398     842 .. 0.81
   2 !  174.4   0.0   9.7e-54     7e-52     462     690 ..    1364    1595 ..    1352    1600 .. 0.90

  Alignments for each domain:
  == domain 1    score: 119.7 bits;  conditional E-value: 3.6e-37
   TIGR03375 266 ltalvDLpfvllf..llvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklpvereeekrllsreklkGeielknvsfkYpeeek...........aaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldg...........vdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRall..kdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivld 675
                 + +l D p+ +++   l++ ++g+ +++  +v++ ++   +++l+   ++la+ + ++ ++++    es+++++ +k+++ e+ +    ++      + +    ++ a+ + ++++v     v+vv + +y+ + + +   ++  a  L      Pl    +l+  +   +++l+++ + +++++ ++  ++l  +++  Geie+k+ sf ++ +++           +aL +v+lk+ +Ge va++G +GsGKs+l k +lg ++p    v+  +           vd+     ++l  n+gy +q+++   Gtlrd i++g+  +++e+  +a+  aG+++ +++   + ++ +ge+G+sLSgGQr  valaRal+  +++++l+LD+  +alD++  + ++er+ + ++  +   +lvt   sl + +dr++++ 
  MMETSP1061-20121228|6394_1 405 VHTLWDGPLQIMIytYLLFQCLGSSVAWGLAVLLSVIPTNSIVLRI-SDRLARLENEARSARTKRTNESITHMKLLKVQSWEKVFADDIKKHRRDELNRHRMRGVVRAVNSAISNAVPA--LVLVVTLTAYAKTGKPIKASTIFTAISLFNQLRYPLFFYPMLIDSLVIGRNSLRRIASYLTSEELTPYVQTLPPKSDGGGEIEIKHGSFLWSTSNQikdgevappdsPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPKIVVESNidsdakestnpVDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGRD-YDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKasKAATILVTNDPSLPRRCDRVVLMG 838
                 6677777766555114566789999***999999888888877764.47777777777888888889***********99999998887776655444333333444444444554443..467788899**999***************************************************************************9976543222333333338************************************99866555444000111111114444445567889***********************98.89999**********************************************9334578*****************99998755444368889*****************996 PP

  == domain 2    score: 174.4 bits;  conditional E-value: 9.7e-54
   TIGR03375  462 lkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyept.eGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkk..hpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLelvdriivldkGrivadGpkdevle 690 
                   kG +++knvs+kY+ ++  +L++v+l++ pG+ ++++Gr+GsGKs+ll  l +++e + +G++ +dg+dir +++++lr++++++pqd++Lf+Gtl  N+    + a+ +++ +a+e+a   ++v++     Gl+  i+e+G +LS GQrq++ laRal+k+ +il+LDE ts++D+++++++ +++++     +  ++ v+Hr   +   d+i vl +G+++  G+ + +l+
  MMETSP1061-20121228|6394_1 1364 WKGGVSFKNVSMKYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDATGK-ATPDDMWKALEAASP-DLVRHfkTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVekGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLN 1595
                  5899*********************************************999999997549****************************************99887.555578899988864.44444114469******************************************************998872345677788************************9887775 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.0   0.1   3.7e-28   2.7e-26     111     541 ..     384     837 ..     376     867 .. 0.70
   2 !   22.4   0.7   1.1e-07   7.9e-06      91     322 ..    1087    1320 ..    1011    1331 .. 0.77
   3 !  182.0   0.0   5.2e-56   3.7e-54     329     565 ..    1365    1604 ..    1362    1610 .. 0.92

  Alignments for each domain:
  == domain 1    score: 90.0 bits;  conditional E-value: 3.7e-28
   TIGR02203 111 sgsllsrltfdseqvvsaatdvlkvlvretltvigllivlly.....lsWqltlivvvllPvlallvrvvskrlrkiskeiqnsige.ltkvveea..lqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGe.lvafitamlalikplksLtnvsaklqkg..laaaesvfallDsppekdeGtralervrGkvefrn...v.tfrypgddrealdsislkveaGevvalvGrsGsGkstlvnll.......pRFyepdsGeillDgv......dladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRall..kdaPiLiLDeatsaLDneseRlvqa.aLerlmk.gRttlviahRLstiekaDrivvl 541
                 sg +l+ + +d+ ++ saa++v  +l    l+++  + +l+      + W l++ ++ ++P  ++++r +s+rl ++++e + + ++  ++++ ++  l+ +   k+f+ ++ +++R d+++++ +r  ++ +  s++s+++  l+  v+l++        + +   t+ + +  +   +      + sL    ++l +    +++e++   + + p k +G  ++e  +G+        + + +  + d +al +++lkv++Gevva+vG+ GsGks+lv+ +       p+ +   + +i  D +      dl      +L  +v + sq+  +  +t+ + + +g+   +de++  +a+ +a + + + +     +++vGe+gs LsGGqR R+a+aRal+  +++ +LiLD+  +aLD+     v +  ++r    +  t+++    s  ++ Dr+v +
  MMETSP1061-20121228|6394_1 384 SGGVLNLMQSDASNIESAAMQV-HTLWDGPLQIMIYTYLLFQclgssVAWGLAV-LLSVIPTNSIVLR-ISDRLARLENEARSARTKrTNESITHMklLKVQSWEKVFA-DDIKKHRRDELNRHRMRGVVRAV-NSAISNAVPALVLVVTLTAYAKTGKPIKASTIFTAISlFNQLRYPLFFYPMLIDSLVIGRNSLRRIasYLTSEELTPYVQTLPPKSDGGGEIEIKHGSFLWSTsnqIkDGEVAPPDSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVlgeltpvPKIV--VESNIDSDAKestnpvDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGRD--YDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFErVIKRAKAsKAATILVTNDPSLPRRCDRVVLM 837
                 6788999999999998888876.5666667776665555553333334687775.4567799888876.6788888888777665541444554432144455556665.67777888999888777777754.56888888889888888877666554444444444440444444555555556777766677766422567899999****999999999999999997654311132457788899******************************86411111113333..34455555441110003333344579999**********************87..9**************************************************9555689************97654443312233322033455555566666666666665 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 1.1e-07
   TIGR02203   91 RkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskei....qnsigeltkvveealqgyrvvklfgg.qeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGe....lvafitamlalikplksLtnvsaklqkglaaaesvfallDsppekdeGt 322 
                   +++++ ++++p a+fd ++sg++lsr+  + e v +a+ + +  ++   l+v +     l ls  ++ ++vv l   + l  ++ kr+r   +++    q++ + + +   eal+g  v+++  g +++ + R+ +++++++++   v+  +   s  ++ i+ + + +  +  ++ ++ag+l  G+    l+  ++   ++  ++++Lt ++++    +++ ++v ++ D + ++d+  
  MMETSP1061-20121228|6394_1 1087 HNRMVASVFRAPMAFFDATPSGQILSRFGKELETVDRALPESVASVLYCFLQVSSTA---LALSGVISPAMVVPLSFAGALYIRTMKRFRPAARDMkrseQRTRSPIFTHFGEALRGTEVIRSIPGaKKTWSTRHRRLADINLSVFSTVKALDRWLSVNLEAIGNSMVFITAVSSVFLSRAGRLHSGSagwgLTQSLAITGLMAWAVRNLTMLESQ----MMSVQRVTEITDIDANEDNKD 1320
                  568999*********************************999999998888876654...5668999999999999999999999999987766661111566667788899**********8866155667899888888888777776666666666666665544444444567888898888863233666666677888899999977665....567788888888776666554 PP

  == domain 3    score: 182.0 bits;  conditional E-value: 5.2e-56
   TIGR02203  329 rGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepd.sGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpe..GldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLer..lmkgRttlviahRLstiekaDrivvlddGkiverGtheeLla.rnGlYasL 565 
                  +G v+f+nv+++y++++  +l+++ l+v +G ++ +vGr GsGks+l+  l R +e++ +G i +Dg+d++ +++++LR  +a++ qd vLF +t+a n+  +   +++ +++ +al+aa   dlv +  +  Gl+ e+ e g++Ls GqRq + +aRal+k + iL+LDeats++D+  + +vq+++ +  + kg   + +ahRL t+   D+i vl +G+++e G+ ++Ll+ +nG + sL
  MMETSP1061-20121228|6394_1 1365 KGGVSFKNVSMKYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDAT--GKATPDDMWKALEAAS-PDLVRHFKTlgGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKefVEKGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNiKNGEFRSL 1604
                  699*****************************************************9768***************************************9754..558889999**99885.689987664449*****************************************************96533777788899********************************8578888776 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.9   0.2   2.9e-27   2.1e-25     489     688 ..     626     841 ..     392     865 .. 0.71
   2 !  191.0   0.0     9e-59   6.5e-57     197     709 ..    1054    1605 ..    1043    1606 .. 0.77

  Alignments for each domain:
  == domain 1    score: 86.9 bits;  conditional E-value: 2.9e-27
   TIGR03796 489 aleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepw.....sGeilfDgkpree....i..prevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLv..knPsiLilDEatsaLDaetEkaidenlrrRg....ctciivaHRLstiRdcdeiivlerGk 688
                 + ++p + d++l++++G+ vA+vG+ GsGks + k v G  +p+     + +i  D k+ ++    +  p+ +l   + + +q+  + +gt+rd + ++ +   ee+ ++A+ DA ++++i++ +   e+++ e g+ lsGGqr R+ +ARaL   +n  +LilD+  +aLDa++  ++ e++ +R      ++i+v+   s  R cd+++++    
  MMETSP1061-20121228|6394_1 626 PPDSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVpkivvESNIDSDAKESTNpvdlMsrPEVTLHGNVGYCSQEAWVPKGTLRDAI-VFGRDYDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAkaskAATILVTNDPSLPRRCDRVVLMGSSS 841
                 45789999*******************************99997222224445555443322222121145567889*****************99.68999***************************************************755899*******************9999988863333578*****************997665 PP

  == domain 2    score: 191.0 bits;  conditional E-value: 9e-59
   TIGR03796  197 llgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqln.dkvaellsgqlattvldlvlvvfyalvml.lydlvlaliaialaainvlalql...vsrkrvdanrrlqqdagklagvaiaglqsietlk.AsglesdffsrwaGyqakllnaeqelgv.atallsvlpelltsltsalilvvg.glrvlegeltiGml..vafqsllasflepveklvglvselqeleadlerldDvlenpvdeelee.........eeekaaeseek...........................ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlye.pwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvil..arpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr....RgctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaYarLi 709 
                  l  l+ +a++ +++ +l++  ++ +  + ++   +r++  ++r P+ ff+   +g+i sR   + + v ++l +++a+++  ++ v   al +  + ++ + +      a+ + +++     +r  + +++r ++      g a+ g ++i ++  A  + s   +r+a +   + ++ ++l++  ++ l+++ +++  +t+++ + ++ + r+ +g+   G    +a + l+a   ++++ l +++ ++q +    + + D+  n+ +++le+         +         +                              +G v ++nv+  y++  + ++++++ls+ pG+ + +vG  GsGks +   +  + e + +G i +Dg++ ++++ e l+ sla++ qd vlf+gt+  nl    ++ p+ d+ +A++ Aa  d +   ++ gg+e+e++egg nls Gqrq + +ARaL+k+  iL+lDEats++Da+t++++++ +r+    +g+++i vaHRL t+   d+i vl +G+v+e G+  +ll+ k+g +++L+
  MMETSP1061-20121228|6394_1 1054 LNNLAYAAIVASLFLWLRSFSTMLVGLNASTFYHNRMVASVFRAPMAFFDATPSGQILSRFGKElETVDRALPESVASVLYCFLQVSSTALALSgVISPAMVVPLSFAGALYIRTMKRfrpAARDMKRSEQRTRSPIFTHFGEALRGTEVIRSIPgAKKTWSTRHRRLADINLSVFSTVKALDRwLSVNLEAIGNSMVFITAVSSVFLSrAGRLHSGSAGWGLTqsLAITGLMAWAVRNLTMLESQMMSVQRV----TEITDIDANEDNKDLEKtkmqmpremD---------MagealklpselglraspltenalladgWPWKGGVSFKNVSMKYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEiEPKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDATGKATPD-DMWKALE-AASPDLVRhfKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKefveKGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNiKNGEFRSLV 1605
                  6678899999**************************************************9876377888888888877665555544444332134444433333333333334333000344445555555566666777888888888888524556677889999999999999999997367899***999999988765555416688888887775322677777776666666666666665554....444555444444444442222322220.........1233344566677777888888889998999*********************************************876555444442779******************************************9999997.6888876.55677776125679******************************************************99755558************************************9998999999997 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.5   0.0   4.5e-31   3.3e-29     492     689 ..     627     840 ..     574     863 .. 0.82
   2 !   14.1   0.1   3.1e-05    0.0022     237     306 ..    1087    1155 ..    1062    1302 .. 0.78
   3 !  155.4   0.0   5.6e-48     4e-46     475     710 ..    1364    1604 ..    1347    1605 .. 0.87

  Alignments for each domain:
  == domain 1    score: 99.5 bits;  conditional E-value: 4.5e-31
   TIGR00958 492 pdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvl...lDg........kplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALv..rkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkg 689
                 pd p l d ++++ +Gevva+VGP GsGKS+ +  +     P    v+   +D         ++l     + lh +v+   qE  + +g++r+ i +G + +++e+ t a+  a+ ++ i   +   + +vgekGs lsgGq+ r+A+ARAL   ++  vLiLD+  +ALDa+v  ++ e      +a++ + +l+++  s+ +++d+++++   
  MMETSP1061-20121228|6394_1 627 PDSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPKIVVesnIDSdakestnpVDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGRD-YDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFErvikRAKASKAATILVTNDPSLPRRCDRVVLMGSS 840
                 8999***************************88655555566543332222443112222113455556789**************************65.678888999999***************************************8557899*************8777776655523334445568899999*********998765 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 3.1e-05
   TIGR00958  237 redlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlv 306 
                  +++++ s+ r  ++Ffd+++ G++ SR +++ +tv + l++ v  +l ++   +++ ++ ls+ ++ ++v
  MMETSP1061-20121228|6394_1 1087 HNRMVASVFRAPMAFFDATPSGQILSRFGKELETVDRALPESVASVL-YCFLQVSSTALALSGVISPAMV 1155
                  678899***********************************998766.4555555555555554444444 PP

  == domain 3    score: 155.4 bits;  conditional E-value: 5.6e-48
   TIGR00958  475 leGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPt.gGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselek..gydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykql 710 
                   +G v F++Vs  Y + ++  vl++ t+++ pG++  +VG  GsGKS+  + l +  + + +G + +Dg +++ +  + l+  +a++ q+Pvlf+g++  N+    + t+d++ +  a +a   d + ++++  g + e+ e G  ls Gq+q i +ARAL++k  +L+LDeAtS +Da+++q +q+       +k+ +v+ +ahrL tv   dki+vl +g+v e G  ++L + ++  +++l
  MMETSP1061-20121228|6394_1 1364 WKGGVSFKNVSMKY-NPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDATGKATPDDMWK--ALEAASPDLVRHFKTlgGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDtirkEFVEKGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNIKNgEFRSL 1604
                  689***********.3455579****************************999999875437****************************************9999999998765..567778899999886447********************************************77777776542155568899*****************************9999987554466666 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0       1.1        76       4      89 ..     263     349 ..     260     373 .. 0.64
   2 !  116.4   0.0   5.1e-36   3.6e-34     328     529 .]     623     837 ..     585     837 .. 0.90
   3 ?   -3.3   0.1       9.5   6.9e+02      47     116 ..    1054    1123 ..    1012    1212 .. 0.71
   4 !  152.5   0.0     6e-47   4.3e-45     320     529 .]    1362    1579 ..    1320    1579 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 1.1
   TIGR02857   4 alalaallgvvsallliaqAallarvvssliaag..ealaelltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaa 89 
                  l ++++l ++++ +    + l+ar + s+  ag  ++ +e   a+ +l++vl+l+++++    +   ++a++++  +   +++k ++
  MMETSP1061-20121228|6394_1 263 LLLTTGILRLINTFVQAFPSLLVARFLRSI-EAGptAPIQESFRAVILLVAVLCLKMITENQFFHNVVNMATRIRGSVEGLIFDKSLR 349
                 566777888888888888889*******99.444112344445556666677777766665555555566666666666555555555 PP

  == domain 2    score: 116.4 bits;  conditional E-value: 5.1e-36
   TIGR02857 328 svayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv............ngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrda..pllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkivvl 529
                 +va +++  al +v+l+v++ge+va+vG+ G+GKs+l+k++lg ++p   +i+v            n ++l +  + +++ ++++ +Q++++ +gt+++ i ++r + + +   +a+ +ag+d+ +++     e+ +Ge+g+ LSgGqr R+aLAral+ d+  ++l+lD   a+LDa+    v e++ + a  ++++++lv+ +++l +++d++v +
  MMETSP1061-20121228|6394_1 623 EVAPPDSP-ALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPV-PKIVVesnidsdakestNPVDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGRDYDE-ERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYGDQntKVLILDDCLAALDARVGSIVFERVIKRAkaSKAATILVTNDPSLPRRCDRVVLM 837
                 56666665.************************************876.5677778999999998888899999999***************************97755.5599***************9*****************************99889********************99986554348899*****************976 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 9.5
   TIGR02857   47 laalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdaldd 116 
                  l  la ++++ +l+ wl+      ++++++    +r+++ v++   a    ++sg++ +   ++++ +d 
  MMETSP1061-20121228|6394_1 1054 LNNLAYAAIVASLFLWLRSFSTMLVGLNASTFYHNRMVASVFRAPMAFFDATPSGQILSRFGKELETVDR 1123
                  5567777777788888888888888888888888888888888877778888888888888888887774 PP

  == domain 4    score: 152.5 bits;  conditional E-value: 6e-47
   TIGR02857  320 s....slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvept.eGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealerag..ldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaeladkivvl 529 
                  +     ++++nvs++y+ ++  +l+ev l+v+pg+++++vG  G+GKs+ll  l ++ve + +Gai+++g ++++++ +++r+++a +pQ P+lf+gt+a n+   + +a+ +++ +ale+a   l +  k+l+ gle+ei e+g +LS Gqrq + LAral++++++l+lDE t+++Da+t+++v++++r+ +  +g +v+ vaHrl ++  +dki vl
  MMETSP1061-20121228|6394_1 1362 WpwkgGVSFKNVSMKYNPSSpLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDA-TGKATPDDMWKALEAASpdLVRHFKTLG-GLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFveKGVSVITVAHRLDTVIGYDKIAVL 1579
                  14456799********7777699***********************************97648****************************************95.5677888899999999622556677886.*******************************************************98555699******************9765 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.0   0.0   2.8e-33     2e-31     147     529 ..     422     824 ..     374     825 .. 0.76
   2 !  147.9   1.9   1.2e-45   8.6e-44      95     530 .]    1093    1567 ..    1080    1567 .. 0.78

  Alignments for each domain:
  == domain 1    score: 107.0 bits;  conditional E-value: 2.8e-33
   TIGR02868 147 liallsvaaalvlaaallvalvvap..lvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldak.........vevaeasapaaeaaas......ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldp...........lkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLl..adapvllLDEPtehLDaeteeelledLl.aaeegrt.vvlvthr 529
                 l  +    ++  +a +l+v l v+p   + lr++ + ++ ++++rs+ ++++ + + +++ l+v+   + + +++++  r+ ++ ++ +  ++a+ +a++ ++ +l+++ +l +  +     + + ++ A+  + +L    +l+  p  +++l   r++++Ri+  l  +         +++ ++  + +            + + +++d +v+ p++ ++l +v+l++  Ge vavvG+ G+GKs+L+++++g l p           ++ + +++ v+++s  e  +   v ++ q+a + + t+r+ + ++r d ++e  ++a+  +g+ + +++     + ++ge+g++lSGG+r R+alARaL   ++ +vl+LD   + LDa +++ + e ++  a+++++ ++lvt +
  MMETSP1061-20121228|6394_1 422 LFQC----LGSSVAWGLAVLLSVIPtnSIVLRISDRLARLENEARSARTKRTNESITHMKLLKVQSWEKVFADDIKKHRRDELNRHRMRGVVRAVNSAISNAVPALVLVVTLTAYAKTGKPIKASTIFTAISLFNQLRY--PLFFYPMLIDSLVIGRNSLRRIASYLTSEeltpyvqtlPPKSDGGGEIE----IkhgsflWSTSNQIKDGEVAPPDS-PALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPvpkivvesnidSDAKESTNPVDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGR-DYDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIkRAKASKAaTILVTND 824
                 3333....34444444555544544115777888888999999**************************************999999999**********999999988888766656555555555556666666544..55667899***************87777756665555433333322222....133334466777888888887777.5699*******************************99982222222221122333445567777778888999**********************8.789999****************4444556789*********************777889*********************9997555555459***976 PP

  == domain 2    score: 147.9 bits;  conditional E-value: 1.2e-45
   TIGR02868   95 rLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlv.valaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelv.vaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldak...........................vevaeasapaaeaaas.....................ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldp.lkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervg..LadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthrl 530 
                  ++ ra  a+  +  +G++L+r+++  ++++  l   +  ++  ++ v + a al++++s+a+ + l  a ++ +  +   ++ aar  +++++r rs +  +  ++l+g++ ++ + Ga++   ++ ++  +  + +    +a++++ +    ++  + v+ +++  v  + +grl           +La++  +a     +  l++   + +R++e++d                                            +                      k  + ++++s++y+ +++ vl++v+l ++pG+ + vvG++G+GKs Ll +l+++++   kG + +dg+++ s+s +++r   ++++qd+ lF+ t+  Nl  a ++at +++++aLe++   L ++ +   +Gl++++ egg  lS G+rq + lARaL+++ ++l+LDE t ++Da+t +++ ++++   +e+g  v+ v+hrl
  MMETSP1061-20121228|6394_1 1093 SVFRAPMAFFDATPSGQILSRFGKELETVDRALPESVASVLYCFLqVSSTALALSGVISPAMVVPLSFAGALYIRTMKR-FRPAARDMKRSEQRTRSPIFTHFGEALRGTEVIRsIPGAKKTWSTRHRRLADINLSVFSTVKALDRWLSVNLEAIGNSMVFITAVSSVFLSRAGRLHSGSAGWGLTQSLAITGLMAWAVRNLTMLESQMMSVQRVTEITDIDanednkdlektkmqmpremdmagealkL--------------PselglraspltenalladgwpWKGGVSFKNVSMKYNPSSPlVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIePKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLD-ATGKATPDDMWKALEAASpdLVRHFKT-LGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRkeFVEKGVSVITVAHRL 1567
                  555666777788899**************99888888887777762444445555555555555555444444444444.45688999999******************999864789999998888887777777777777777776554444444555555555665556666666666666666777777777777777777777777777777777665556667555556655555544444441..............045555555666666667777778899**************9***********************************996269****************************************8.899************995448999999.69********************************************************44456666688899985 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   2.2e-34   1.6e-32     135     529 ..     418     840 ..     395     849 .. 0.79
   2 !  140.9   0.0   1.4e-43     1e-41     315     541 ..    1366    1594 ..    1358    1596 .. 0.93

  Alignments for each domain:
  == domain 1    score: 110.6 bits;  conditional E-value: 2.2e-34
   TIGR01842 135 vvfllhpylGllalvgavvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikgeitaGmiiagsilvg......raLaPidqaievWkqfsaarkaykrlkelleelpareealklPepe...gelevenvslvppeekk...........ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpa.....sGsvrlDg......adlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygd..PklvvLDePnanLDe.eGeqalakalkelkarkitvvvithrpsllelvdkilvlkdG 529
                   +ll   lG  +  g  vl+++   n+++ + + + a   + +++    +++r  e+i  + +lk  ++ Wek  +  +++++  + +   + ++ +++  ++  +v +l  ++++   + +G  i +s + +      +   P+        +++  r++ +r+ + l++ +      +lP      ge+e+++ s+  +++++           + l ++++++++Ge++a++Gp gsGks+L++ ++G  +p+     + ++  D+      +dl    + tl  ++GY  q+  + +Gt+ + i  f+++ d+e+  +a   ag+ + i++     + ++ge+G++LsgGqr R+aLaRalygd   k+++LD+  a LD+  G + + + +k++ka k++++++t+ psl +  d+++++   
  MMETSP1061-20121228|6394_1 418 YTYLLFQCLGSSVAWGLAVLLSVIPTNSIVLRISDRLA---RLENEARSARTKRTNESITHMKLLK--VQSWEKVFADDIKKHRRDELNRHRMRGVVRAVNSAISNAVPALVLVVTLTAYAKTGKPIKASTIFTaislfnQLRYPLFFYPMLIDSLVIGRNSLRRIASYLTSEELTPYVQTLPPKSdggGEIEIKHGSFLWSTSNQikdgevappdsPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVpkivvESNIDSDAkestnpVDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIV-FGRDYDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYGDqnTKVLILDDCLAALDArVGSIVFERVIKRAKASKAATILVTNDPSLPRRCDRVVLMGSS 840
                 34555556666666666666666655555544333333...3333444456788899999999997..578*****99999999999999999999999999999999999888888888888888877765540111103334666666677899999****************9999999854323379999999988888888889******99***********************************98876211114444555422222235555566789999******************97.8888****************************************************9733689***********736999********************************999765 PP

  == domain 2    score: 140.9 bits;  conditional E-value: 1.4e-43
   TIGR01842  315 gelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwl.pasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpk..GYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakal.kelkarkitvvvithrpsllelvdkilvlkdGalkafGereevl 541 
                  g ++ +nvs+    +   +l+++++++ +G++l+++G  gsGkssL  +l  +++ + +G +++Dg+d++ +  e+l  s+  +Pqd  Lf+Gt+a n+   ++ a+++++ +a ++a   +l+ ++ +  G ++ei+egG +Ls Gqrq i LaRal  + k++vLDe  +++D++ +q + + + ke  +++++v++++hr   +   dki+vl +G++ ++G+ +++l
  MMETSP1061-20121228|6394_1 1366 GGVSFKNVSMKYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEiEPKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDATGK-ATPDDMWKALEAAS-PDLVRHFKTlgGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIrKEFVEKGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLL 1594
                  667889999999999999*****************************999998762569*****************************************9999.9******9998775.79**9998655******************************************************94468899********************************988876 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   7.3e-24   5.3e-22     351     549 ..     627     839 ..     616     870 .. 0.80
   2 !    8.7   0.9    0.0017      0.13      60     210 ..    1053    1204 ..    1009    1262 .. 0.82
   3 !  167.1   0.0   1.9e-51   1.4e-49     333     566 ..    1363    1599 ..    1346    1607 .. 0.88

  Alignments for each domain:
  == domain 1    score: 76.0 bits;  conditional E-value: 7.3e-24
   TIGR02204 351 pdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGail...ldG........vdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarail..kdapiLLLdeatsaLdaeseqlv.qqaleelmkgr.ttlviahrLatvlkadrivvldk 549
                 pd +al +++l+v++Ge+va+vGP G+Gks+l++ +l    P    +    +d         vdl++     l  ++   +q++ +  +  ++ i +Gr d  +e+ ++a   a  d+ i +     +  +Ge+g +LsGGq+ r+a+ara+   +++++L+Ld+  +aLda+    v ++ ++++ + + +t+++    +  +++dr+v +  
  MMETSP1061-20121228|6394_1 627 PDSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPKIVVesnIDSdakestnpVDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGR-DYDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVfERVIKRAKASKaATILVTNDPSLPRRCDRVVLMGS 839
                 899***********************************9999866553122444111111113344433444556677899*****************9.778899999999999999999999999999**********************9334579**************99888345666665554268888888889999999999965 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0017
   TIGR02204   60 afalllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllli.GalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktv 210 
                  ++  l   ++v +l   lr +  + +G   ++   +++ a +++   affd + sg++lsr+  + + +  ++  s++  l   l +   ala+  ++s+ +   +  a  l +  +  f    r + r  q + + + ++ geal+ ++ +
  MMETSP1061-20121228|6394_1 1053 YLNNLAYAAIVASLFLWLRSFSTMLVGLNASTFYHNRMVASVFRAPMAFFDATPSGQILSRFGKELETVDRALPESVASVLYCFLQVSsTALALSGVISPAMVVPLSFAGALYIRTMKRFRPAARDMKRSEQRTRSPIFTHFGEALRGTEVI 1204
                  566667777888888999*****************************************************999999888888887651567777788887776666666677777777777777777777776666666666666666555 PP

  == domain 3    score: 167.1 bits;  conditional E-value: 1.9e-51
   TIGR02204  333 kvrgeiefeevkfay.ParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPq.sGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpe..GydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelm..kgrttlviahrLatvlkadrivvldkGriveqGthaeLia.kgg 566 
                  + +g ++f++v+++y P+ p  ++l+++ l+v pG t+ +vG +G+Gks ll  l r  + + +Gai +dG+d+r+++ e+lr++la++pqd++lfa+    n+     +a+ +++ +a +aa+  +++++++   G ++++ e g +Ls Gq+q i +ara++k+++iL+Ldeats++da+++q+vq  + +    kg   + +ahrL tv+  d+i+vl +G++ e G+ ++L++ k+g
  MMETSP1061-20121228|6394_1 1363 PWKGGVSFKNVSMKYnPSSP--LVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDA-TGKATPDDMWKALEAAS-PDLVRHFKTlgGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFveKGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNiKNG 1599
                  67899**********55555..9**********************************9875438***************************************984.56899999999998886.56888887444******************************************************977551155567778***************************999863445 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.1   1.5e+02     119     224 ..     245     352 ..     197     375 .. 0.73
   2 !   78.0   0.0   1.7e-24   1.3e-22     317     659 ..     466     839 ..     380     874 .. 0.66
   3 !    7.8   1.2     0.003      0.21     182     418 ..    1057    1309 ..    1046    1324 .. 0.72
   4 !  168.8   0.0   5.7e-52   4.1e-50     449     682 ..    1365    1605 ..    1350    1608 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.1
   TIGR03797 119 kklklldllkfalrgaerdllavllvgllgtllglvvPlatgilldev..iPdaerslllqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpa 224
                 k+ + l llk ++r+++  ll+  ++ l+ t +  +  l+ +  l ++   P+a  ++ ++ ++ l+a+   +++ +      v+ ++t++  s++  ++d+ Lrlp+
  MMETSP1061-20121228|6394_1 245 KNSESLVLLKAIVRNQKSLLLTTGILRLINTFVQAFPSLLVARFLRSIeaGPTAPIQESFRAVILLVAVLCLKMITENQFFHNVVNMATRIRGSVEGLIFDKSLRLPE 352
                 445567788999999999999999999999998877777766666543115666666666655555555555555555555679999999999999999999999996 PP

  == domain 2    score: 78.0 bits;  conditional E-value: 1.7e-24
   TIGR03797 317 tvqlingisKlrvagae..erafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisll..aaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgkLs..GaievdrvtFrYe.....kdg......plvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPe.....sGsvlyDGq......dlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralv..rkPrillfDEATSALDNrtQaiVsesl....eklkvtRiviAHRLSTirnadrilvlee 659
                 t    ++i+ +++  ++  e++fa   k+   +r+ el+ +r++ ++ ++n++++  + a++ +++ + +  +++ +++++  +  + f ++   +    + + +++      +r+   l++e  +   ++ p k    G+ie+++ +F ++     kdg      +  L dv+lk++ Ge va+vG+ GsGKS+l++ +Lg  +P      + ++  D +      dl +     +  ++G   Q++ +  g++ ++i+ g  +  ++  +a+  ag+++Di +  ++    + e g++lSGGQr R+ +Aral   +  ++l++D+   ALD r  +iV e +    ++ k++ i++    S  r++dr++ +  
  MMETSP1061-20121228|6394_1 466 TKRTNESITHMKLLKVQswEKVFADDIKK---HRRDELNRHRMRGVVRAVNSAISNAVPALVLVVTLTAYakTGKPIKASTIFTAISLFNQLRYPLFFYPMLIDSLVIGRNSLRRIASYLTSEELTPYVQTLPPKSDggGEIEIKHGSFLWStsnqiKDGevappdSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVpkivvESNIDSDAKestnpvDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGRDYDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVikraKASKAATILVTNDPSLPRRCDRVVLMGS 839
                 33444445444444333112344444444...444445555555555555554443332222222222221256666666666666667777666666655555555556678888888877777766666665554226899999999886222222332221113579********************************999972222234555666521121133333344678899**************************************************************************844689*******************9886422114456667899999999999999998854 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.003
   TIGR03797  182 llaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasra.mgvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgll..qvrkerkllelegklsgltvqlingisKlr.vagaeerafaawakefseqrklelka.qriedlltvlnavlpvltsavlfalaisll................aaaklslgsflafntafgsflkavtslaetliev 418 
                  l+ aa++a+lf + +s++++ +  ++++  +  ++  ++r p++fF +  +g+++sr  + ++++ r+l +++  ++l  ++ + + +l l   ++ a+v  l  + a+ + ++  ++     ++r  +++++ +++   + ++g + +r + ga++    +w+ ++++   ++l++ ++++ l   l++ l+++   ++f++a+s +                 +++l +  ++a+++   ++l++ +  ++ ++e+
  MMETSP1061-20121228|6394_1 1057 LAYAAIVASLFLWLRSFSTMLVGLNASTFYHNRMVASVFRAPMAFFDATPSGQILSRFgKELETVDRALPESVA-SVLYCFLQVSSTALALSGVISPAMVVPLSFAGALYIRTMKRFRpaARDMKRSEQRTRSPIFTHFGEALRGTEVIRsIPGAKK----TWSTRHRRLADINLSVfSTVKALDRWLSVNLEAIGNSMVFITAVSSVflsragrlhsgsagwgLTQSLAITGLMAWAVRNLTMLESQMMSVQRVTEI 1309
                  67899****************************************************74689*******99875.5666788888888888877777777666665555555555544115677888899999999999999999999994555554....4666666666666664144455555666677777776666666665556766666665555555555555555555555555555555555555555 PP

  == domain 4    score: 168.8 bits;  conditional E-value: 5.7e-52
   TIGR03797  449 sGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLg.FekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmag..leeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslek....lkvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLla.keGlfaela 682 
                  +G ++ ++v+ +Y++++plvL++v+l++ pG  +++vG  GsGKS+ll  L+   e   +G++  DG d++++ ++++R  l ++ Q+  l++g++ +n+ ++ + t+d+ w+a++ a+  l    k++  gl   iseggg+lS GQrQ + +Aral++k +il++DEATS +D +t + V +++ k      v+ i +AHRL T+   d+i vl +G+v e Gs ++Ll+ k+G f +l+
  MMETSP1061-20121228|6394_1 1365 KGGVSFKNVSMKYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRiVEIEPKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDATGKATPDDMWKALEAASpdLVRHFKTL-GGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKefveKGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNiKNGEFRSLV 1605
                  799*******************************************98777652688889*******************************************************99872233444444.59**********************************************999999987622224678899********************************9899***9998 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.0   4.3e-25   3.1e-23     468     666 ..     628     839 ..     623     870 .. 0.80
   2 ?    0.7   0.4      0.37        27     211     348 ..    1077    1222 ..    1043    1263 .. 0.67
   3 !  168.2   0.0   7.5e-52   5.4e-50     452     688 ..    1364    1604 ..    1335    1609 .. 0.90

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 4.3e-25
   TIGR01846 468 dspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvl...vdg........vdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralva..nPrilildeatsaldyeseavimrnlreickg..rtviiiahrlstvraadrilvlek 666
                 ds + l +++l++ +Gev+ +vGp GsGks+l k +    +P    v+   +d         vdl     ++l  +vg   qe+ + ++++rd i  ++ + +ee+  +a   aG  + i +     e +vgekG++lsGGqr r+alaral +  n ++lild+  +ald+   +++ +++ + +k+   + i ++   s  r++dr++++  
  MMETSP1061-20121228|6394_1 628 DS-PALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPKIVVesnIDSdakestnpVDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGR-DYDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYGdqNTKVLILDDCLAALDARVGSIVFERVIKRAKAskAATILVTNDPSLPRRCDRVVLMGS 839
                 44.45889*************************988777777544443222333112222225666666678899999999***************998.6899************************************************9622689****************9999987655443113456778888999******99965 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.37
   TIGR01846  211 dvelgaklyrh......llalPlsyfesrrvGdtvarv.releqirefltgsaltvvld.llfvvvflavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqla 348 
                   v l+a  + h      ++  P+++f+    G++++r  +ele++   l +s   v+   l  + + la     sp +++ + ++  +y+  +    p  r    ++  + +   + + e++ g e i++    ++     +r la
  MMETSP1061-20121228|6394_1 1077 LVGLNASTFYHnrmvasVFRAPMAFFDATPSGQILSRFgKELETVDRALPESVASVLYCfLQVSSTALALSGVISPAMVVPLSFAGALYIRTMKRFRPAARDMKRSEQRTRSPIFTHFGEALRGTEVIRSIPGAKKTWSTRHRRLA 1222
                  444444444432222115668****************8689****99998765544433133445566666677777777667777777777777777777766666677777777777888888888776555544444445555 PP

  == domain 3    score: 168.2 bits;  conditional E-value: 7.5e-52
   TIGR01846  452 lkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqr.lyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkq..GyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlre..ickgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyakl 688 
                   kG ++f+n+ ++y++ sp vl++++l++++G ++G+vG++GsGks l   l r + +  kG + +dg d+  +    lr  ++++ q+ vlf ++++ n+  +  a +++     a  a + d++ + k   G e e++e G++ls Gqrq i laral+++ +il+ldeats++d+++++ +++ +r+  + kg  vi++ahrl+tv   d+i vl +G+++e G+ ++ll+  +g + +l
  MMETSP1061-20121228|6394_1 1364 WKGGVSFKNVSMKYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRiVEIEPKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDATGKATPDDM--WKALEAASPDLVRHFKTlgGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKefVEKGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNIkNGEFRSL 1604
                  589*******************************************98766655157889*****************************************98877777663..3445566788888777544******************************************************99766889************************************998647777665 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   9.5e-21   6.9e-19     488     683 ..     630     839 ..     616     867 .. 0.80
   2 !   16.0   0.0   9.7e-06    0.0007     204     372 ..    1059    1229 ..    1042    1265 .. 0.82
   3 !  140.2   0.0   2.5e-43   1.8e-41     472     707 ..    1366    1606 ..    1349    1607 .. 0.89

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 9.5e-21
   TIGR01193 488 evledislkikknekitlvGlsGsGkstlakllvkff...........qaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsd..skvlildestsnldlltekkivenllk...lkdktiifvahrlsvakksdkiivlde 683
                 ++l d++lk+++ e++++vG  GsGks+l+k +++              +++ + + n+++l    + +l   + y  qe ++ +G++ + +++g   + ++e+ ++av  a +++di   +l  + ++ e++ss+sgGq+ r+alaral  d  +kvlild++ + ld  +   + e+++k    ++ + i+v+   s+ ++ d+++ + +
  MMETSP1061-20121228|6394_1 630 PALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELtpvpkivvesnIDSDAKESTNPVDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGR--DYDEERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYGDqnTKVLILDDCLAALDARVGSIVFERVIKrakASKAATILVTNDPSLPRRCDRVVLMGS 839
                 6799**************************987765523222222211333445566777777777889************************995..6789999*********************************************9763378************8666655555554111334556889999999999999999865 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 9.7e-06
   TIGR01193  204 layilqqvlsyikafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiid.alastilslfldlsilvivglvlvlqniklfllsl.vaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadyleksl 372 
                   a i+ +++ ++++f+++++g + s+    + +  +f  Pm+ff +   G+i+srf    + +d al   + s++  +  +  ++l l    +  +++ l  a  +y+  +  f  + + +++ + ++ + + +   e l G e i+s+ + +++++  ++++ad   + +
  MMETSP1061-20121228|6394_1 1059 YAAIVASLFLWLRSFSTMLVGLNASTFYHNRMVASVFRAPMAFFDATPSGQILSRFGKELETVDrALPESVASVLYCFLQVSSTALALSGVISPAMVVPLsFAGALYIRTMKRFRPAARDMKRSEQRTRSPIFTHFGEALRGTEVIRSIPGAKKTWSTRHRRLADINLSVF 1229
                  566788899999*********9999999999*************************988877775888887777666655556666665444444444332566899999999999999999999999999999999***********99999988887777777655555 PP

  == domain 3    score: 140.2 bits;  conditional E-value: 2.5e-43
   TIGR01193  472 gdievndvsysyGygse.vledislkikknekitlvGlsGsGkstlakllvkffq.aesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklpl..GyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllk.lkdk..tiifvahrlsvakksdkiivldeGkiieqGshkellk.enGfyaslih 707 
                  g +++++vs +y  +s+ vl++++l++   +++ +vG +GsGks+l   l +  + + +G i+++g++++ ++ ++lr +++ +Pq+P++f+G++  nl  +a  +++ ++++ka+e a  +  +++++   G+++e+se + ++s Gq+q ++laral+ +sk+l+lde+ts++d  t++++ + + k + +k  ++i vahrl+     dki vl +G+++e Gs ++ll+ +nG ++sl++
  MMETSP1061-20121228|6394_1 1366 GGVSFKNVSMKYNPSSPlVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEiEPKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNL--DATGKATPDDMWKALEAASPD-LVRHFKTlgGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKeFVEKgvSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNiKNGEFRSLVD 1606
                  6788999*****98886489*************************99999998862669***************************************6..899999**********99643.3444432239************************************************99877653244552278**********************************857899999875 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0     4e-18   2.9e-16     351     542 ..     632     837 ..     604     872 .. 0.75
   2 !  140.6   0.0     2e-43   1.5e-41     332     569 ..    1365    1607 ..    1353    1619 .. 0.90

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 4e-18
   TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlinllqrvydpk...........sgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarail..knapilvldeatsaldvetearvkdai.dalr.knrttfiiahrlstvreadlvlfl 542
                 + dv +++ +g+ va+vgp g+gk++l+  +     p              + + + vd+ +    +l   +    q+a + + ++r+ i +gr+   +e   +a   a   + i + + + +  vge+g+ lsgg+r r+a+ara+   +n+ +l+ld+  +ald      v + +    +  + +t++++   s  r  d v+++
  MMETSP1061-20121228|6394_1 632 LCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVpkivvesnidsDAKESTNPVDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGRDYD-EERYTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERViKRAKaSKAATILVTNDPSLPRRCDRVVLM 837
                 679*************************866544444311111000000122233446666666778899999999******************864.44555666667677778888889999**********************9855799*************99877665544143330344566777777777888887776 PP

  == domain 2    score: 140.6 bits;  conditional E-value: 2e-43
   TIGR01192  332 kgavefrdisfefanssqgv.rdvsfeakagqtvaivgptgagkttlinllqrvydpk.sgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfie..krlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdai..dalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliq.kdgrfakllra 569 
                  kg v f+++s+++  ss  v  +v++ +  g t+ +vg tg+gk++l+  l r+ + + +g i idg+di +v+ e lr s+a + qd  l+  ++  n+     +at +++ +a +aa+  d++   k l g ++ + e g +ls g+rq + +ara++k + ilvldeats++d +t+ +v+d+i  + ++k  + + +ahrl tv   d +  l qg ++e gs ++l + k+g+f +l+ a
  MMETSP1061-20121228|6394_1 1365 KGGVSFKNVSMKYNPSSPLVlNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDAT-GKATPDDMWKALEAASP-DLVRhfKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIrkEFVEKGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNiKNGEFRSLVDA 1607
                  799**********9888776267***********************99999998875438***************************************9864.56899999999998875.666523568899****************************************************95456889999999***************************99987659*****99865 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.1   5.8e-18   4.2e-16      14     202 ..     628     822 ..     622     842 .. 0.75
   2 !   87.5   0.0   2.7e-27   1.9e-25       3     233 ..    1369    1593 ..    1368    1601 .. 0.84

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 5.8e-18
   TIGR02315  14 gkqalknvnleikkGelvaviGlsGaGkstllrsinrlve.....issgsillegkevtklk...kkelrklrkkigmifqeynlierltvlenvLsgrlgakstlk.sllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRala..qqpklilaDEPiasLDpksskqvmdll.krinkekgitvivn 202
                 ++ al +vnl++++Ge+vav+G+ G+Gks l++++ +  +       +++i  + ke t+      +   +l+ ++g+ +qe + + + t  + ++ gr   ++     ++      d+ +A  +L+    +    ++ ++LsGGq+ Rva+aRal   q++k+++ D+ +a+LD +  ++v++ + kr    k  t++v+
  MMETSP1061-20121228|6394_1 628 DSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTpvpkiVVESNIDSDAKESTNPVdlmSRPEVTLHGNVGYCSQE-AWVPKGTLRDAIVFGRDYDEERYTqAVYD--AGMDQDIASGTLSS---EMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERViKRAKASKAATILVT 822
                 667899***************************975544324444456677776666554332225666688999******9.68999999999999996655554403333..45677777777753...3334568899***************766999********************9865166666667777764 PP

  == domain 2    score: 87.5 bits;  conditional E-value: 2.7e-27
   TIGR02315    3 evenlskvyp.ngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveis.sgsillegkevtklkkkelrklrkkigmifqeynlierltvlenv.Lsgrlgakstlksllglfsee..dkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233 
                   ++n+s +y+ +   +l++v l++ +G  ++v+G+ G+Gks ll ++ r+vei+ +g+i+++g ++++++   ++klr ++++i q+  l + + + +n+  +g+ +  +++k     ++ +  d  + +++L   gl++  ++   +Ls Gq+q + +aRal++++k+++ DE ++s+D ++ +qv d++++   ekg++vi   H++d +  y d+i  l +g+++ +g++s+l
  MMETSP1061-20121228|6394_1 1369 SFKNVSMKYNpSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVS---MEKLRDSLAIIPQDPVLFAGTLA-SNLdATGKATPDDMWK----ALEAAspDLVRHFKTL--GGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIGY-DKIAVLGQGHVLEYGSPSDL 1593
                  57899999972456799***********************************6549**********9765...5667889******9888765443.4441345555555555....4444400455555555..5899999************************************************************************9.89**********99999876 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   1.1e-17   7.9e-16      13     216 ..     628     837 ..     617     850 .. 0.81
   2 !   88.3   0.0   1.5e-27   1.1e-25       3     232 ..    1369    1595 ..    1367    1602 .. 0.92

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 1.1e-17
   TIGR00972  13 ekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydk....kldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikd.kkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciarala..vePevlLlDePtsaLDpiateki.eeliqeLkkk.ytivivthnmqqaarvsdktaff 216
                 +  al dvnl++ + +v+a++Gp G+Gks+l++++      v+++ +e ++  + k+ ++     +  +v+l  +vG   q+    + ++ d +++g    + +  +++ d+ +++ + + +l  e+  ++ +++ sLsGGq+ r+++aral    + +vl+lD+  +aLD+   + + e +i+  k +    ++vt + +  +r+ d+++++
  MMETSP1061-20121228|6394_1 628 DSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPKIVVESNIDSDAKESTNPvdlmSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGRDYDEERYtQAVYDAGMDQDIASGTLSSEM--DVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVfERVIKRAKASkAATILVTNDPSLPRRC-DRVVLM 837
                 66799****************************98777777888999999988887766541111456789***********999999*********999886651566788899999999999886..68899******************6336789************99877663778888776547778899877666554.566555 PP

  == domain 2    score: 88.3 bits;  conditional E-value: 1.5e-27
   TIGR00972    3 evknlklfygeke..alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqe..LkkkytivivthnmqqaarvsdktaffleGelveegeteqife 232 
                  + kn+++ y+  +  +l++v+l+++  +  +++G +G+Gks+ll +l r+ +       +G++ ++g di +   ++ +lr ++ ++ q p  f+ ++  n+  + +++     k+l+++  + +++      +++++++ + +Ls Gq+q +c+aral  + ++l+lDe ts++D+++ ++++++i++  ++k + ++ v h ++  +   dk+a++ +G+++e+g+++++++
  MMETSP1061-20121228|6394_1 1369 SFKNVSMKYNPSSplVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIE----PKGAIEIDGIDIRSV--SMEKLRDSLAIIPQDPVLFAGTLASNLDATGKATPDDMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKefVEKGVSVITVAHRLDTVIG-YDKIAVLGQGHVLEYGSPSDLLN 1595
                  56889999988765699********************************99876....68**********876..7789*****************************999999************************************************************************9753345669*********98876.69**************9998875 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   1.5e-20   1.1e-18      21     215 ..     632     838 ..     628     842 .. 0.78
   2 !   67.4   0.0   3.8e-21   2.7e-19      19     203 ..    1383    1568 ..    1368    1585 .. 0.83

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 1.5e-20
   TIGR02982  21 lfdinleiepgeiviltGpsGsGkttllt.ligglrsv....qeGelkvlgke....lkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakea.kakaeelleavglee..rldykpedlsgGqkqrvaiaralv..arPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkme 215
                 l d+nl++++ge+v + Gp GsGk +l+  ++g l  v     e +++  +ke    ++ +  +  v +  ++Gy  q+   +   t ++ + ++ +  e+  +++   a  ++ + +  l +   +  k + lsgGq+ rva+aral   ++ k+++ d+  aald++ g  v e + k+a+   ++ +lvt d+ +   +dr+v m 
  MMETSP1061-20121228|6394_1 632 LCDVNLKVDSGEVVAVVGPVGSGKSALVKaVLGELTPVpkivVESNIDSDAKEstnpVDLM-SRPEVTLHGNVGYCSQEAW-VPKGTLRDAIVFGRDYDEERYTQAVyDAGMDQDIASGTLSSemDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLPRRCDRVVLMG 838
                 89************************98526788866511114555555555454433333.444577999*****99875.566799**********9984444430344455555555666115567899****************844578999*************************************************996 PP

  == domain 2    score: 67.4 bits;  conditional E-value: 3.8e-21
   TIGR02982   19 qvlfdinleiepgeiviltGpsGsGkttl.ltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeell....eavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr 203 
                   vl+++ l++ pg  + + G +GsGk  l ltl   +    +G +++ g +++ +s     ++r ++ +i q   l+   t   n+  + + +++   k+ +a + +l+    +  gle++++    +ls Gq+q + +aral+++ k+++ de t+++d+++ ++v + ++k   e+g++++ v+h   
  MMETSP1061-20121228|6394_1 1383 LVLNEVTLSVPPGSTLGVVGRTGSGKSSLlLTLFRIVEIEPKGAIEIDGIDIRSVSM---EKLRDSLAIIPQDPVLFAG-TLASNLDATGKATPDDMWKALEAASPDLVrhfkTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLD 1568
                  599***********************986279999999999**********999875...57899*******9999976.5566887777777666666666666555411114558*********************************************************************9644 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   2.5e-19   1.8e-17      15     205 ..     631     838 ..     626     853 .. 0.76
   2 !   71.1   0.0     3e-22   2.1e-20       5     220 ..    1372    1595 ..    1368    1604 .. 0.82

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 2.5e-19
   TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekpd.....sGrilleGrdvtr.vkvrdr.......eiGfvfqhyalfkhltvrdniafGleir..kkdkakikakveellelvqleklgd..rypsqlsGGqrqrvalarala..vepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvle 205
                 al dv+l+v++G++va++Gp GsGks+l++++ G   p      + +i  + ++ t+ v++  r       ++G+  q+ a  ++ t+rd i fG +    + ++a   a +++ +    l+   d     s lsGGqr rvalaral    + +vl+ld+ ++alda+v   + + + k  +  k +t++vt d +      dr+v++ 
  MMETSP1061-20121228|6394_1 631 ALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVpkivvESNIDSDAKESTNpVDLMSRpevtlhgNVGYCSQE-AWVPKGTLRDAIVFGRDYDeeRYTQAVYDAGMDQDIASGTLSSEMDvgEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLP-RRCDRVVLMG 838
                 899****************************999655541111123344444444443444444333333379999887.778899*********98864477888889999998887777655442256799***************7225679****************999998888899999*******998755.4567888775 PP

  == domain 2    score: 71.1 bits;  conditional E-value: 3e-22
   TIGR00968    5 nvskrfG..dfqalddvdlevktGslvallGpsGsGkstllrvia.GlekpdsGrilleGrdvtrvkvrd..reiGfvfqhyalfkhltvrdni.afGleir....kkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220 
                  nvs ++   +  +l++v l+v+ Gs  +++G +GsGks+ll ++   +e + +G i ++G d+  v++++   ++ ++ q+  lf   t+  n+ a G        k  +a+  + v ++  l +le   +    +ls Gqrq + laral  + ++l+lde  +++da+  ++++  +rk   e  v+ + v+h  +  +   d+i+vl +G++ + gs++++ +
  MMETSP1061-20121228|6394_1 1372 NVSMKYNpsSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFrIVEIEPKGAIEIDGIDIRSVSMEKlrDSLAIIPQDPVLFAG-TLASNLdATGKATPddmwKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGHVLEYGSPSDLLN 1595
                  66666641145699************************98877651568889**********99988765214689999******97.55556526666544333366677777777777778888888888889**************************************************99*9999***9887776.69*****************9976 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   5.9e-14   4.3e-12      11     189 ..     627     823 ..     618     852 .. 0.73
   2 !   88.5   0.0   1.3e-27   9.5e-26       3     218 ..    1370    1592 ..    1368    1600 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 5.9e-14
   TIGR03410  11 gesevlrdvslevekgevvavlGrngvGkttllkalvgllkvk.....sGeielegeditk.....lkpeervkaGiayvpqGreifpkltveenlelglealkkk.ekkipeeiye....lFPvlkeml.kRrgGdLsGGqqqqlaiaRaLv..tePklllLDePteGiqPsiikei.ekvikelakekdlaillve 189
                  +s +l dv+l+v++gevvav+G  g Gk++l+ka++g l+       + +i  + ++ t+     ++pe   +  ++y +q    +pk t ++ +  g +  +++ ++++ +  ++       + +em    +g  LsGGq+  +a+aRaL   ++ k+l+LD+    +   + + + e+vik+ +++k  +il+ +
  MMETSP1061-20121228|6394_1 627 PDSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVpkivvESNIDSDAKESTNpvdlmSRPEVTLHGNVGYCSQE-AWVPKGTLRDAIVFGRDYDEERyTQAVYDAGMDqdiaSGTLSSEMDvGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVfERVIKRAKASKAATILVTN 823
                 57889*********************************98654111114445544444332111113456666778*****95.678*************9998886555655444311103344456642678999***************9334789*******99999877654337899999988888887754 PP

  == domain 2    score: 88.5 bits;  conditional E-value: 1.3e-27
   TIGR03410    3 venlevaYgese..vlrdvslevekgevvavlGrngvGkttllkalvgllkvk.sGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk....ekkipeeiyelFPv...lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekee 218 
                   +n++++Y+ s+  vl++v+l+v+ g+++ v+Gr g Gk++ll +l  +++++ +G+ie++g di+++ + e+ +  +a +pq   +f+  t + nl  + +a++++     ++   ++   F     l++  +  gG+Ls Gq+q + +aRaL+++ k+l+LDe t  +     ++++++i++   ek+++++ v + ld +    d+++vl +G+v++ g+ ++
  MMETSP1061-20121228|6394_1 1370 FKNVSMKYNPSSplVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSV-SMEKLRDSLAIIPQDPVLFAG-TLASNLDATGKATPDDmwkaLEAASPDLVRHFKTlggLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGHVLEYGSPSD 1592
                  5789999998855599********************************9997649**********887.57899*********9999986.9999**988888887655443344455666666611156667789*****************************************************************9998.699*********99887655 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.1   3.2e-16   2.3e-14      17     212 ..     632     839 ..     626     852 .. 0.76
   2 !   79.1   0.0   9.3e-25   6.7e-23      12     226 ..    1380    1595 ..    1369    1607 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 3.2e-16
   TIGR03873  17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagad.........lkalsrrararrvalveqdsdaevpl.svrdvvalGriPhrslfaadsdedaevvdralarvelssl.adrdlstlsGGerqrvhlaral..aqePklllldePtnhldvsaqlellalv.relaaegvtvvvalhdlnlaasvcdhvvvldg 212
                 + dv++++ +G++ +++GP GsGks+l++ + G l+p    v  +  d         +  +sr + +++  +   +++a vp  + rd++++Gr     ++++    da++ + + + +  s++    + s lsGG+r rv laral   q+ k+l+ld+    ld +    +++ v +   a+++++++   d +l  + cd+vv++++
  MMETSP1061-20121228|6394_1 632 LCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPKIVVESNIDsdakestnpVDLMSRPEVTLHGNVGYCSQEAWVPKgTLRDAIVFGRDYDEERYTQAV-YDAGMDQDIASGTLSSEMdVGEKGSSLSGGQRARVALARALygDQNTKVLILDDCLAALDARVGSIVFERViKRAKASKAATILVTNDPSLP-RRCDRVVLMGS 839
                 569999******************************98776633333333445888888999999888876666666666664389********98888887654.55555443333333333313456799***************55599***************9987777655144447778888888999886.67999999865 PP

  == domain 2    score: 79.1 bits;  conditional E-value: 9.3e-25
   TIGR03873   12 ggrlivddvdvtaPaGaltgllGPnGsGkstll.rllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvr.elaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevlt 226 
                   + l++++v++++P+G+  g++G  GsGks ll  l   ++   +G+++++g d++++s  +    +a++ qd    +   + +  a G+     ++ a  ++  ++v++  +  +l+s  +     ls G+rq + laral ++ k+l+lde t  +d ++  ++   +r e +++gv v+   h l+  + + d++ vl++G v   G+p+++l 
  MMETSP1061-20121228|6394_1 1380 SSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLlTLFRIVEIEPKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDATGKATPDDMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRkEFVEKGVSVITVAHRLDTVIGY-DKIAVLGQGHVLEYGSPSDLLN 1595
                  567899***********************9976155566666779****************999**********99999999999*****99999999999999**********************************************************999999987356899***********998877.9*****************9985 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.6   0.4     3e-17   2.2e-15      19     211 ..     631     840 ..     618     850 .. 0.72
   2 !   70.7   0.0   3.7e-22   2.6e-20       8     224 ..    1371    1595 ..    1366    1604 .. 0.83

  Alignments for each domain:
  == domain 1    score: 54.6 bits;  conditional E-value: 3e-17
   TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLekqd.....aGaillggrditr.....lppqkrdyGiv.f.qsYaLfPnltvaeniayGLk..nkklkreevaerveelLelvglsgsee..kyPgqlsGGqqqrvaLarala..lsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkg 211
                 al d++l+v  ge+v+++GP G Gk++L++++ G  ++      + +i  + ++ t+       p+   +G v +    a  P  t+++ i +G    +++++++  ++ +++ ++   ls+  +     + lsGGq+ rvaLaral      ++L+LD+ l+aLDa+v   + e + k  +  + +ti+vt d       +Dr+v m ++
  MMETSP1061-20121228|6394_1 631 ALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVpkivvESNIDSDAKESTNpvdlmSRPEVTLHGNVgYcSQEAWVPKGTLRDAIVFGRDydEERYTQAVYDAGMDQDIASGTLSSEMDvgEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLP-RRCDRVVLMGSS 840
                 799*****************************99443330011133333334443332111112333344544221235999************65115566666667777777766666654332234789***************7336789*******************9999999999*********997543.568999998766 PP

  == domain 2    score: 70.7 bits;  conditional E-value: 3.7e-22
   TIGR03265    8 eeiekefe..aftalkdislsvkkgelvclLGPsGCGkttLLrii.aGLekqdaGaillggrditrlppqk.rd.yGivfqsYaLfPnltvaeni.ayGLknk.klkr...eevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYe 224 
                  ++++ +++  +  +l+++ lsv  g  + ++G  G Gk++LL  +   +e + +Gai ++g di +++ +k rd   i+ q  +Lf   t+a+n+ a G  +   + +   +   + v+++  l gl++  +   g ls Gq+q + Laral+ + ++L+LDe  s++Da+  ++++  ++k   + gv  i v+h  +  +   D+i+v+ +g++  +g+P+++ +
  MMETSP1061-20121228|6394_1 1371 KNVSMKYNpsSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLfRIVEIEPKGAIEIDGIDIRSVSMEKlRDsLAIIPQDPVLFAG-TLASNLdATGKATPdDMWKaleAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGHVLEYGSPSDLLN 1595
                  566666663234589************************9876551668999************99998764774799********87.788888245654431333311134446799999999**********************************************************9************9987766.6*****************99876 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.9e-06   0.00021      15      55 ..     629     669 ..     623     690 .. 0.88
   2 !   20.9   0.0   7.1e-07   5.1e-05     135     205 ..     760     833 ..     743     840 .. 0.86
   3 !   84.4   0.0   2.6e-26   1.9e-24       2     199 ..    1368    1569 ..    1368    1582 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.9e-06
   TIGR02673  15 veaLkdvslkiekgeflfltGasGaGkttllklllgaekps 55 
                   aL dv+lk++ ge++ ++G+ G+Gk++l+k +lg ++p 
  MMETSP1061-20121228|6394_1 629 SPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPV 669
                 6799******************************9999886 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 7.1e-07
   TIGR02673 135 peelsgGeqqRvaiaRaiv..nkPelllaDePtGnlDdelseril.dllkelnkrGttvivathdeelvervkk 205
                  ++lsgG + Rva+aRa+   ++ ++l+ D+    lD+++ + ++ +++k+++++ ++ i++t d +l +r ++
  MMETSP1061-20121228|6394_1 760 GSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFeRVIKRAKASKAATILVTNDPSLPRRCDR 833
                 578***************8435689***************999984699***99999999*******9988765 PP

  == domain 3    score: 84.4 bits;  conditional E-value: 2.6e-26
   TIGR02673    2 ielekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllk.lllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenv.....alalevrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildll.kelnkrGttvivathdeel 199 
                  +++++vs++y+ ++  +L++v+l++ +g+ l ++G+ G+Gk++ll  l   +e   +G++e++g d++++   ++ +lR +++++ qD  l+ + t + n+     a +  + ++ e++    v++  +l gle  +++   +ls+G +q + +aRa+++k ++l+ De t  +D+++ +++ d + ke+ ++G++vi ++h  + 
  MMETSP1061-20121228|6394_1 1368 VSFKNVSMKYNpSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLtLFRIVEIEPKGAIEIDGIDIRSV---SMEKLRDSLAIIPQDPVLF-AGTLASNLdatgkATPDDMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIrKEFVEKGVSVITVAHRLDT 1569
                  689*******9567789**************************8761555677889********998766...6789***********8665.56777776333335666667777888889999999999***************************************************986626899***********8765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   2.2e-17   1.5e-15      13     205 ..     631     836 ..     626     837 .. 0.77
   2 !   65.9   0.0   9.8e-21   7.1e-19       2     195 ..    1371    1568 ..    1370    1579 .. 0.80

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 2.2e-17
   TIGR03608  13 ilkklslkiekGelvaivGesGsGKstlLn.ilgllekkdsgkvilegkekaklks......kkaskllreklgylFqnfaLlenetveenlelalklkkkskk..ekekkkkevlekvgl..ekklkkkiyelsgGekqRvalarill..keselilADEPtgsLDkknreevlellke.lkeegktiiivtHdpevaekadrvie 205
                  l +++lk+++Ge+va+vG  GsGKs l+  +lg l  + +  v  + ++ ak ++      ++ +  l+ ++gy  q+ a + + t+++ +  +  + ++  +    +  + + + +  l  e +  +k  +lsgG++ Rvalar+l   +++++++ D+  ++LD++  ++v+e + +  k +    i+vt dp++ +++drv+ 
  MMETSP1061-20121228|6394_1 631 ALCDVNLKVDSGEVVAVVGPVGSGKSALVKaVLGELTPVPKIVVESNIDSDAKESTnpvdlmSRPEVTLHGNVGYCSQE-AWVPKGTLRDAIVFGRDYDEERYTqaVYDAGMDQDIASGTLssEMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKrAKASKAATILVTNDPSLPRRCDRVVL 836
                 57899***********************95489*999988777665544433333300001123334455678999998.7889999999999999987766551145667788888877744667789*******************9446789********************866550555666789**************985 PP

  == domain 2    score: 65.9 bits;  conditional E-value: 9.8e-21
   TIGR03608    2 kniskkfkdk..eilkklslkiekGelvaivGesGsGKstlLnil.gllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekek....kkkevlekv.glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlell.kelkeegktiiivtHdpe 195 
                  kn+s k++     +l+++ l++  G+++ +vG+ GsGKs lL  l   +e + +g + ++g +   ++s + ++ lr++l+ + q+  L    t+ +nl+ + k +     +  +     ++++ +++ gle+++++   +ls G++q + lar+l+k+s++++ DE t+s+D+++ ++v + + ke  e+g  +i v H   
  MMETSP1061-20121228|6394_1 1371 KNVSMKYNPSspLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLfRIVEIEPKGAIEIDGID---IRSVS-MEKLRDSLAIIPQDPVLF-AGTLASNLDATGKATPDDMWKALEaaspDLVRHFKTLgGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIrKEFVEKGVSVITVAHRLD 1568
                  57777776553479************************998765516678899**********...55555.55579*********9988.579******98888776554443311114566667763478888888899****************************************98835789***********765 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.5e-05    0.0018      15      47 ..     630     662 ..     623     686 .. 0.85
   2 !   19.0   0.0   2.3e-06   0.00017     127     190 ..     757     822 ..     738     861 .. 0.80
   3 !   85.2   0.0   1.4e-26     1e-24       3     224 ..    1369    1598 ..    1367    1605 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.5e-05
   TIGR03864  15 ralddvsltvakgefvaLLGpnGaGkstLfsll 47 
                  al dv+l+v +ge+va++Gp G+Gks L++ +
  MMETSP1061-20121228|6394_1 630 PALCDVNLKVDSGEVVAVVGPVGSGKSALVKAV 662
                 6999*************************9644 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 2.3e-06
   TIGR03864 127 eekvreLnGGhrrrveiarall..hePklLLlDeatvGLDiesraalveevrelvreeglsvLWat 190
                  ek  +L+GG+r rv +aral    + k+L+lD+  + LD++  + + e v + +++++ + +  t
  MMETSP1061-20121228|6394_1 757 GEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVT 822
                 567789***************9334679***************99999999888877776655555 PP

  == domain 3    score: 85.2 bits;  conditional E-value: 1.4e-26
   TIGR03864    3 eveglsfaygkrr..alddvsltvakgefvaLLGpnGaGkstLfslltrLye.akegeikvaGldlrrapkeala.rlGvvfqqstlDldlsveqnlryh..aaLhGlsra..eaeerieealarl.glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224 
                  + +++s++y  ++  +l++v+l+v++g+   ++G  G+Gks L+  l r++e +++g i++ G d+r+ ++e l+ +l ++ q++ l    +++ nl     a+   + +a  +a+  + ++ + l gl+   +e   +L+ G+r+ + +aral+ + k+L+lDeat  +D+++ +++++++r+   e+g+sv+   h +d v   d++ vl +G+vl  G++++l + ++
  MMETSP1061-20121228|6394_1 1369 SFKNVSMKYNPSSplVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEiEPKGAIEIDGIDIRSVSMEKLRdSLAIIPQDPVLF-AGTLASNLDATgkATPDDMWKAleAASPDLVRHFKTLgGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNIKN 1598
                  56788999987653389**************************9999999983569**************999984688888888875.56888888765115555555431133334444444442799999999***************************************************************************************99987655 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.4e-05    0.0017      21      53 ..     632     665 ..     620     677 .. 0.86
   2 !   38.8   0.0   2.1e-12   1.5e-10     135     215 ..     756     838 ..     747     843 .. 0.90
   3 !   62.5   0.3   1.2e-19   8.6e-18      18     218 ..    1382    1583 ..    1369    1586 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.4e-05
   TIGR02211  21 lkgvsleiekgelvaivGssGsGkstllh.llgg 53 
                 l +v+l++++ge+va+vG  GsGks+l+  +lg 
  MMETSP1061-20121228|6394_1 632 LCDVNLKVDSGEVVAVVGPVGSGKSALVKaVLGE 665
                 778************************9724555 PP

  == domain 2    score: 38.8 bits;  conditional E-value: 2.1e-12
   TIGR02211 135 inkkpselsGGerqrvaiaralv..nkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelk 215
                 + +k s lsGG+r rva+aral   ++ k+++ d+  + ld++  +++fe + +  k+++ a ++vt d +l ++ drv+ + 
  MMETSP1061-20121228|6394_1 756 VGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLPRRCDRVVLMG 838
                 55789*****************843578999***********************************************98875 PP

  == domain 3    score: 62.5 bits;  conditional E-value: 1.2e-19
   TIGR02211   18 ievlkgvsleiekgelvaivGssGsGkstllhll.ggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenv.....amPlliskkskkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgk 218 
                    vl++v l++  g ++++vG +GsGks ll +l   ++   +G ++++G +++++s +   klr+ +l  i q   l+a  t   n+     a P  + k  ++ + +   ++    gle  i++  ++ls G+rq + +aral++k k+++ de t+ +d++t +++ + +++   ek+++++ v+h l+ +   d+   l +g+
  MMETSP1061-20121228|6394_1 1382 PLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLfRIVEIEPKGAIEIDGIDIRSVSME---KLRD-SLAIIPQDPVLFAG-TLASNLdatgkATPDDMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIGYDKIAVLGQGH 1583
                  469*************************98766516679999************99865...6775.69999997766665.4445551001134444444444444444444445558**********************************************************************998887777777776665 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   1.6e-13   1.2e-11       8     204 ..     631     838 ..     627     869 .. 0.75
   2 !   74.5   0.0   2.5e-23   1.8e-21       8     225 ..    1384    1601 ..    1379    1622 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 1.6e-13
   TIGR01186   8 gvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkil...idGediaeisdaelr...evr.rkkiamviqkialfPhmtildnislglellkideqe.rkekalea.lklvdl..eeyedryPdelsGGmqqrvGlarala..aePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilk 204
                 ++ dv+l+++ Ge++ ++G+ GsGks+lv+ +   + P    +    id +     ++++l    ev     +++  q+ a +P  t+ d i +g +  +    +   +  ++  +    l  e  + +    lsGG++ rv laral   ++ ++l++d+ ++ald  + + + + ++k  k  + + +++t d     r +dr+v++ 
  MMETSP1061-20121228|6394_1 631 ALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPKIVVesnIDSDAKESTNPVDLMsrpEVTlHGNVGYCSQE-AWVPKGTLRDAIVFGRDYDEERYTQaVYDAGMDQdIASGTLssEMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSL-PRRCDRVVLMG 838
                 5679**************************9888888876544334489999999999999422345423467777665.89*************98654333220222223321333334323334567789***************7225678*************************9999999999***99654.47789999995 PP

  == domain 2    score: 74.5 bits;  conditional E-value: 2.5e-23
   TIGR01186    8 gvndvdleieeGeiiviiGlsGsGkstlvrllnrlieP.taGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkeka.....lealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaney 225 
                   +n+v l++  G  + ++G +GsGks+l+  l r++e   +G i idG di  +s ++l    r  +a++ q+  lf   t+  n++ + + +  d  +  e a     ++   l +le    +   +ls G++q + laral  + ++l++dea s++d  + +++qd + k   +   +++ ++h ld  +   d+i++l +G+++  G+P ++l+    e+
  MMETSP1061-20121228|6394_1 1384 VLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIePKGAIEIDGIDIRSVSMEKL----RDSLAIIPQDPVLFA-GTLASNLDATGKATPDDMWKALEAAspdlvRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGHVLEYGSPSDLLNIKNGEF 1601
                  5799*******************************885248******************....899*******99997.588888887776665555555554411110444456688999999999***************************************************************9987.5********************99777776 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.8e-06   0.00063      25      63 ..     630     668 ..     623     674 .. 0.90
   2 !   30.1   0.0   9.4e-10   6.8e-08     148     225 ..     760     838 ..     748     855 .. 0.88
   3 !   70.3   0.1   5.1e-22   3.7e-20      23     251 ..    1381    1606 ..    1368    1614 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 8.8e-06
   TIGR02769  25 avldnvslsleeGetvallGrsGaGkstlarlllGlekP 63 
                 + l +v+l++++Ge va++G  G+Gks+l + +lG   P
  MMETSP1061-20121228|6394_1 630 PALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTP 668
                 56899*****************************96655 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 9.4e-10
   TIGR02769 148 PrqlsGGqlqriniarala..vePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvld 225
                  + lsGGq  r+++aral    + k+++ld++++ ld      ++e + k  +++  a +++t d +l ++ ++rv+++ 
  MMETSP1061-20121228|6394_1 760 GSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLPRR-CDRVVLMG 838
                 5789**************633689**************************999************999765.9*****96 PP

  == domain 3    score: 70.3 bits;  conditional E-value: 5.1e-22
   TIGR02769   23 rkavldnvslsleeGetvallGrsGaGkstlarlllG.lekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvrei..igePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhpagrllqe 251 
                     vl++v ls+  G t++++Gr+G+Gks l   l   +e   kG +   G d+  +   ++ ++r  + ++ qd +    +  s       + P   ++ l+++   + + ++  l +l+se+      +ls Gq q i++aral  + k++vldea s++d     ++ + ++k   e G++++ ++h l  v  + ++++vl +G+++e  + ++ll +k+   r l +
  MMETSP1061-20121228|6394_1 1381 SPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRiVEIEPKGAIEIDGIDIRSV---SMEKLRDSLAIIPQDPVLFAGTLASNLDAtgKATPDDMWKALEAA-SPDLVRHFKTLGGLESEIS-EGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIGY-DKIAVLGQGHVLEYGSPSDLLNIKNGEFRSLVD 1606
                  5579*************************98766655157788*********99876...67789999*******865444433333330134566666667655.5667888888888888765.56789**************************************************************99876.89***********99999999998887777765 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00012    0.0087      20      51 ..     631     662 ..     623     695 .. 0.87
   2 !   24.3   0.1     4e-08   2.9e-06     138     215 ..     760     838 ..     739     852 .. 0.78
   3 !   73.6   0.0   4.2e-23     3e-21      20     230 ..    1384    1595 ..    1370    1603 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00012
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircv 51 
                 al +v+l v  g+++ v+g  g+gks+l++ v
  MMETSP1061-20121228|6394_1 631 ALCDVNLKVDSGEVVAVVGPVGSGKSALVKAV 662
                 899**************************998 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 4e-08
   TIGR02314 138 psnlsggqkqrvaiaralas..epkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavid 215
                  s lsggq+ rva+aral    + kvl+ d+  +ald      ++e + +  +  + + +l+t +  +  r cd+v +++
  MMETSP1061-20121228|6394_1 760 GSSLSGGQRARVALARALYGdqNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSL-PRRCDRVVLMG 838
                 589***************752268*************9988888876544444455555567777655.45588887765 PP

  == domain 3    score: 73.6 bits;  conditional E-value: 4.2e-23
   TIGR02314   20 aldnvslfvpkgqifgvigasgagkstli.rcvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnl....lssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifs 230 
                   l++v+l vp g  +gv+g +g+gks+l+     ++e   +ga+ +dg d+ ++s  +l   r  + +i q   l    l+s       a p ++ +  +      v  + +l gl         nls gq+q + +aral  + k+l+ deats++d  t q + + +++   + g++++ ++h +d v    d++av+++g+++e g+ s+++ 
  MMETSP1061-20121228|6394_1 1384 VLNEVTLSVPPGSTLGVVGRTGSGKSSLLlTLFRIVEIEPKGAIEIDGIDIRSVSMEKL---RDSLAIIPQDPVLfagtLASNLDATGKATPDDMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGHVLEYGSPSDLLN 1595
                  599**********************99761567899**************999987766...6677788777554111144554555567888888888888888999999********999********************************************9999888999************9976.69***************999875 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.4   5.8e-16   4.2e-14      16     201 ..     634     836 ..     624     846 .. 0.74
   2 !   57.5   0.0   4.2e-18     3e-16      16     208 ..    1387    1585 ..    1369    1589 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 5.8e-16
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGei...kvndkdhtrsap...yerpvsmlf......qennlfahltvrqniglGlkp..glklnavqkekvedvarqvGiadyle..rlpeelsGGqrqrvalarclvrek..pillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvv 201
                   +l+v++Ge va++G+ G+Gks+l++ + G l+p+   +   +++   + ++ p     rp   l        ++   ++ t+r+ i +G +       +av    +++   +  ++  ++      +lsGGqr rvalar l  ++   +l+ld+ ++ald ++   ++  v k a+  k + +lvt ++s   +  ++vv+
  MMETSP1061-20121228|6394_1 634 DVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPKIVvesNIDSDAKESTNPvdlMSRPEVTLHgnvgycSQEAWVPKGTLRDAIVFGRDYdeERYTQAVYDAGMDQDIASGTLSSEMDvgEKGSSLSGGQRARVALARALYGDQntKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLP-RRCDRVVL 836
                 579********************************9653311145555555555522246886666522222223456788899999999976411455678888888877667777777762246789***************96652279***************************999999****998754.44566655 PP

  == domain 2    score: 57.5 bits;  conditional E-value: 4.2e-18
   TIGR01277   16 efdlsveaGervailGesGaGkstl.lnliaGflepasGeikvndkdhtrsa..pyerpvsmlfqennlfahltvrqnigl.G.lkpg...lklnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkik 208 
                  e  lsv  G  + ++G +G+Gks+l l+l    +   +G+i +++ d  +++    +  ++++ q+  lfa  t++ n+   G   p      l+a   + v++  +  G++  +    ++ls Gqrq + lar l+++  il+lde  s++d +  +++   ++k   ek ++++ v+h+l+ +++  ++++v+ +G++ 
  MMETSP1061-20121228|6394_1 1387 EVTLSVPPGSTLGVVGRTGSGKSSLlLTLFRIVEIEPKGAIEIDGIDIRSVSmeKLRDSLAIIPQDPVLFAG-TLASNLDAtGkATPDdmwKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGHVL 1585
                  56799*****************986257888888889*******99876654115667899999******96.7778875414245652212467777788888888899************************************************************************98887.599*******985 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.5   4.9e-14   3.5e-12      23     199 ..     631     824 ..     618     845 .. 0.71
   2 !   65.2   0.0   1.6e-20   1.1e-18       7     231 ..    1366    1597 ..    1364    1606 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 4.9e-14
   TIGR03258  23 vlddlsleieaGellallGksGsGkttllravaGfvkadG...........Grllvadrdlthlppy..krnlallvqnyalfphlkveenvafGlr..arkqskaliaervadalklvqls...daaarlpaqlsGGqqqrvalaralv..vrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthd 199
                  l d+ l++++Ge++a++G+ GsGk++l++av G + +              +      dl   p      n++   q  a  p+ ++ + + fG     ++ ++a  +  + + +    ls   d++ +  + lsGGq+ rvalaral    + +vl+ld+ l+alda++ + v e + +  +     t+l vt d
  MMETSP1061-20121228|6394_1 631 ALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPkivvesnidsdAKESTNPVDLMSRPEVtlHGNVGYCSQ-EAWVPKGTLRDAIVFGRDydEERYTQAVYDAGMDQDIASGTLSsemDVG-EKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATIL-VTND 824
                 577999****************************99887622222111111112222234444454311345565555.5999************652267888999988888888877776222444.45789***************8335679***************999998877766655555554.6666 PP

  == domain 2    score: 65.2 bits;  conditional E-value: 1.6e-20
   TIGR03258    7 sGvvleslrvayg..arvvlddlsleieaGellallGksGsGkttllravaGfvkadG.Grllvadrdlthlppyk..rnlallvqnyalfphlkveenvafGlra.rkqskaliaer..vadalklv.qlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydap 231 
                  +Gv +++++++y+  +  vl++++l + +G  l ++G++GsGk++ll  +   v+ +  G + + + d+  +   k   +la++ q+  lf      +  a G  +   + kal a    +   +k++ +l    ++   +ls Gq+q + laral+ + ++l+lde  s++daq  ++v++ +++   e   ++v+ v+h r ++++  dki ++ +G+++++G + +l +  
  MMETSP1061-20121228|6394_1 1366 GGVSFKNVSMKYNpsSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEPkGAIEIDGIDIRSVSMEKlrDSLAIIPQDPVLFAGTLASNLDATGKATpDDMWKALEAASpdLVRHFKTLgGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEK-GVSVITVAH-RLDTVIGYDKIAVLGQGHVLEYGSPSDLLNIK 1597
                  799999999999722458*************************************9988**********99887663258***********9866666667775442467777655432245555655268888888899******************************************998877664.588999999.66788899*****************9998765 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     2e-06   0.00014       7      44 ..     630     667 ..     627     671 .. 0.87
   2 !   16.4   0.0   1.3e-05   0.00093     124     196 ..     762     836 ..     753     895 .. 0.84
   3 !   73.1   0.1   7.1e-23   5.1e-21       9     222 ..    1385    1604 ..    1377    1622 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2e-06
   TIGR01188   7 kAvdgvnlkveegevfglLGPnGAGKtttikmLttllk 44 
                  A+ +vnlkv+ gev++++GP G GK+ ++k + + l+
  MMETSP1061-20121228|6394_1 630 PALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELT 667
                 6999**************************97665555 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 1.3e-05
   TIGR01188 124 tysgGmrrrlelaaslia..qPevlfLDEPtiGLDprtrraiwd.lieelkkegvtilltthyleeadkladrvai 196
                  +sgG+r r+ la++l    + +vl LD+    LD+r   ++ + +i+  k ++ +++l t++     + +drv +
  MMETSP1061-20121228|6394_1 762 SLSGGQRARVALARALYGdqNTKVLILDDCLAALDARVGSIVFErVIKRAKASKAATILVTNDP-SLPRRCDRVVL 836
                 68**************9622578*****************998725666777777777777663.45556666665 PP

  == domain 3    score: 73.1 bits;  conditional E-value: 7.1e-23
   TIGR01188    9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPd.sGtarvaGyDvvrep.devRrsigvvpqkasvdedLtarenlellgely.glpkkeaeeraeellelve....lkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdliee.lkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevvev 222 
                  +++v+l+v+ g+ +g++G  G GK+ ++  L  +++ + +G   + G D+ + + +++R s++++pq+  +    t   nl  +g+   +  +k+ e+ + +l+  ++    l     +  +++s G+r+ + la++li++ ++l LDE t+ +D++t +++ d i++ ++++gv+++  +h l+ +  + d++a++ +G+++  ++p +L +  ++e+ ++
  MMETSP1061-20121228|6394_1 1385 LNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVSmEKLRDSLAIIPQDPVLFAG-TLASNLDATGKATpDDMWKALEAASPDLVRHFKtlggLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKeFVEKGVSVITVAHRLDTVIGY-DKIAVLGQGHVLEYGSPSDLLNIKNGEFRSL 1604
                  689***********************9999998876442799********9865269***********999876.566799999987625556777888889999886322356666667789*******************************************8626777************99776.9******************986555555443 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.7e-07   1.2e-05      16      56 ..     629     669 ..     623     699 .. 0.88
   2 !   12.6   0.0   0.00024     0.018     137     200 ..     761     827 ..     745     840 .. 0.80
   3 !   71.2   0.0   3.1e-22   2.2e-20       2     206 ..    1368    1575 ..    1367    1584 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.7e-07
   TIGR00960  16 elaldnvtvkiekGelvflvGhsGaGkstllklilgiekps 56 
                  +al +v++k++ Ge+v +vG+ G+Gks+l+k +lg  +p 
  MMETSP1061-20121228|6394_1 629 SPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPV 669
                 68********************************9987775 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 0.00024
   TIGR00960 137 vqlsgGeqqrvaiaravv..nkPallladePtgnlddelsrdile.lleevnraGttvlvathdenl 200
                   lsgG++ rva+ara+   ++ ++l+ d+  + ld  +   ++e ++++ +    + ++ t d +l
  MMETSP1061-20121228|6394_1 761 SSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFErVIKRAKASKAATILVTNDPSL 827
                 579**************8335679*************999988853788888777777777777766 PP

  == domain 3    score: 71.2 bits;  conditional E-value: 3.1e-22
   TIGR00960    2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstll.klilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnv.....alalriiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilell.eevnraGttvlvathdenlveskrk 206 
                  + f++vs +y+ +  l l++vt++++ G+   +vG +G+Gks+ll  l   +e   +G i + g d+  ++   + +lr  + i+ qd  l+   t   n+     a +  +  +   + ++ v+      Gl+    +   +ls G++q +++ara+++k ++l+ de t+ +d ++ +++ + + +e+ ++G+ v+  +h  + v  + k
  MMETSP1061-20121228|6394_1 1368 VSFKNVSMKYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLlTLFRIVEIEPKGAIEIDGIDIRSVS---MEKLRDSLAIIPQDPVLFAG-TLASNLdatgkATPDDMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIrKEFVEKGVSVITVAHRLDTVIGYDK 1575
                  579***************************************98626666778899**********97765...678***********877654.55555411111333444444444444555555556799*************************************************9976379*************9988876654 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0     3e-05    0.0022      16      47 ..     632     663 ..     629     708 .. 0.82
   2 !   26.2   0.0   1.2e-08   8.9e-07     145     219 ..     761     836 ..     749     843 .. 0.86
   3 !   54.4   0.0   3.1e-17   2.3e-15       1     237 [.    1368    1596 ..    1368    1605 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3e-05
   TIGR03005  16 ldglelevaaGekvaliGpsGsGkstilrilm 47 
                 l +++l+v++Ge va++Gp GsGks++++ ++
  MMETSP1061-20121228|6394_1 632 LCDVNLKVDSGEVVAVVGPVGSGKSALVKAVL 663
                 55789*********************998543 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.2e-08
   TIGR03005 145 aqlsGGqkqrvaiarala..lrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlf 219
                 + lsGGq+ rva+aral    + kvl++d+  +ald ++   v++ + + a+  + + +lvt +  + r  +drv++
  MMETSP1061-20121228|6394_1 761 SSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLPRR-CDRVVL 836
                 78***************633689*********************9888889999999999**99888876.577765 PP

  == domain 3    score: 54.4 bits;  conditional E-value: 3.1e-17
   TIGR03005    1 vrisdvtkrfgelt..vldglelevaaGekvaliGpsGsGkstilrilmtletid.eGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphk..tvldnvtea.pvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237 
                  v++++v+ +++  +  vl+++ l+v +G  + ++G +GsGks++l  l+ + +i+ +G i+++g  +  +              ++k+r+ + ++ q   lf     + ld   +a p  +     a++ +   ++  + Gl     +   +ls Gq+q + +aral  + k+l++de+ts++d +  ++v + +r+   e+ ++++ v+h++     + d++  + +G++ e G p ++++ 
  MMETSP1061-20121228|6394_1 1368 VSFKNVSMKYNPSSplVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSV-------------SMEKLRDSLAIIPQDPVLFAGTlaSNLDATGKAtPDDMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIGY-DKIAVLGQGHVLEYGSPSDLLNI 1596
                  578888888886543399*************************999888877776479999987554443.............36899**************865115566666652444544555566666667778889************************************************************************998876.9******************9865 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.1   1.2e-14   8.7e-13       2     190 ..     633     839 ..     632     848 .. 0.80
   2 !   54.4   0.0   3.7e-17   2.6e-15       1     193 [.    1385    1584 ..    1385    1606 .. 0.84

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.2e-14
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekpt.....sgavilegkeitepg.....pdrmvvfqn..y....sllpwltvrenialavdavlrdlskserreiveehielvglreaad..krpeqlsggmkqrvaiaral..sirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltn 190
                  dv+l++  ge ++++g  g gks+l+  + g   p      +  +  + ke t+p      p+ + +  n  y    + +p  t r+ i++  d   +  +++  ++ ++++i+  +l++  d   + + lsgg + rva+aral      k+l+ld+ + alda   + + e+++k ++ +++++++vt d       +drvv++ +
  MMETSP1061-20121228|6394_1 633 CDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVpkivvESNIDSDAKESTNPVdlmsrPE-VTLHGNvgYcsqeAWVPKGTLRDAIVFGRDYDEERYTQAVYDAGMDQDIASGTLSSEMDvgEKGSSLSGGQRARVALARALygDQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLP-RRCDRVVLMGS 839
                 58****************************9988886222224566678888888852222133.2233332222222678999*******************************9999887763367889***************444679***************************************985433.46788888865 PP

  == domain 2    score: 54.4 bits;  conditional E-value: 3.7e-17
   TIGR01184    1 lkdvdleikkgefislighsgcgkstl.lnliaglekptsgavilegkeitepgpdrm....vvfqnysllpwltvrenialavdavlrdlsks...erreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpa 193 
                  l++v l++  g  + ++g +g gks+l l l   +e   +ga+ ++g +i     +++     ++ +  +l   t   n+  + +a   d+ k+      ++v++   l gl++      ++ls g +q + +aral  + k+l+lde   ++da t +++q+ + k + e+ v+v+ v+h +d  ++  d++ +l +g  
  MMETSP1061-20121228|6394_1 1385 LNEVTLSVPPGSTLGVVGRTGSGKSSLlLTLFRIVEIEPKGAIEIDGIDIRSVSMEKLrdslAIIPQDPVLFAGTLASNLDATGKATPDDMWKAleaASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDT-VIGYDKIAVLGQGHV 1584
                  6899********************986257888899999*********999877655422225665556666678888888877777777665411155689*********************************************************************************96.567799999888865 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   9.2e-08   6.6e-06       6      46 ..     630     670 ..     626     686 .. 0.87
   2 !   17.3   0.0   7.4e-06   0.00053     126     186 ..     761     824 ..     745     828 .. 0.86
   3 !   55.5   0.2   1.5e-17     1e-15       4     188 ..    1381    1568 ..    1378    1570 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 9.2e-08
   TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPks 46 
                  +l ++nl+v+ gev+a++G+ G+Gks+l++ + G l P  
  MMETSP1061-20121228|6394_1 630 PALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVP 670
                 4899*********************************9965 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 7.4e-06
   TIGR01166 126 hllsgGekkrvaiagava..lrpdvllldePtagldpa.GaeqlleilrklreeGktvvisthd 186
                 + lsgG++ rva+a a+    +++vl+ld+  a ld++ G   + +++++ +++    ++ t d
  MMETSP1061-20121228|6394_1 761 SSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARvGSIVFERVIKRAKASKAATILVTND 824
                 689**************6336899************9747778889999999999988888888 PP

  == domain 3    score: 55.5 bits;  conditional E-value: 1.5e-17
   TIGR01166    4 eaevlkglnlavergevlallGanGaGkstlllhlnGllrPk.sGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedva....fgplnlGls.eaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrk.lreeGktvvisthdvd 188 
                   + vl+++ l+v  g++l+++G+ G+Gks lll+l  ++  + +G++ +dG ++     ++ +lr  +a++ qdp   lfa ++ +++      +p ++    ea     vr+  ++ +++   +     ls+G+++ + +a a++ ++++l+lde t+++d++  +q+ +++rk ++e+G +v+  +h +d
  MMETSP1061-20121228|6394_1 1381 SPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDI--RSVSMEKLRDSLAIIPQDP--VLFAGTLASNLDatgkATPDDMWKAlEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKeFVEKGVSVITVAHRLD 1568
                  5779******************************9988764338*******665..578999***********99..58888888877411113456665441444556677777777777777888899*****************************************9985499**********9877 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   2.5e-10   1.8e-08      96     174 ..     758     837 ..     647     846 .. 0.82
   2 !   63.9   0.0   3.9e-20   2.8e-18       2     193 ..    1401    1598 ..    1400    1604 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 2.5e-10
   TIGR01187  96 rkpsqlsGGqrqrvalaravv..kkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavl 174
                  k s lsGGqr rvalara+   ++ k+L+lD+ l+aLD ++   + + + +  +    +++lvt D +      dr++++
  MMETSP1061-20121228|6394_1 758 EKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLP-RRCDRVVLM 837
                 57789***************744679****************99998888877888888889999986533.345666666 PP

  == domain 2    score: 63.9 bits;  conditional E-value: 3.9e-20
   TIGR01187    2 LGpsGsGkttlLrllaGleeld.sGkilldgedvtevpaek.r.svnvvfqsyaLfPhmtveenv.....afgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePa 193 
                  +G +GsGk+ lL +l  + e++ +G i +dg d+ +v+ ek r s+ ++ q+  Lf   t++ n+     a +  m k  +a   + v++  +l  le   +    +ls Gqrq + lara++kk kiL+lDe+ s++D +  +q+q  +++   + G+ v+ v+h  +  +   d+iavl +G+++  g+p ++ +  +
  MMETSP1061-20121228|6394_1 1401 VGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVSMEKlRdSLAIIPQDPVLFAG-TLASNLdatgkATPDDMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGHVLEYGSPSDLLNIKN 1598
                  7999*******9999888776548*************98853337999********86.677776433336667788888899999999999999***********************************************************************8776665.7*****************99876555 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   2.1e-14   1.5e-12      15     205 ..     634     837 ..     629     879 .. 0.74
   2 !   49.5   0.1     1e-15   7.5e-14      16     223 ..    1388    1597 ..    1383    1613 .. 0.81

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 2.1e-14
   TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsr...kkiilppe.....kRrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekvie......lLgiehLleRlpgkLsGGekqRvaigRAlLs..sPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvl 205
                 dv+l++++ +v+a+ G  GsGk++l++++ G ++p   +iv++ ++  d++   + ++l        + +vgy  qeA   p  + r+ +++G+   + +++++  ++ ++       L+ e  +  + ++LsGG + Rva++RAl    + ++L++D+ LaaLD +  + ++  + + ++  k   ++v  + + + r  drvv++
  MMETSP1061-20121228|6394_1 634 DVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTP-VPKIVVESNIDSDAKestNPVDLMSRpevtlHGNVGYCSQEAW-VPKGTLRDAIVFGRDYDEERYTQAVYDAGMDqdiasgTLSSEMDVGEKGSSLSGGQRARVALARALYGdqNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPS-LPRRCDRVVLM 837
                 899999999**********************8877.5688888887665541115566643211333579*******97.69***********9988877777654432221111126777778899999****************96226789***********987666655544444555555566665554.45555666665 PP

  == domain 2    score: 49.5 bits;  conditional E-value: 1e-15
   TIGR02142   16 vdlelpgkgvtalFGrsGsGktslirliaGLtr.pdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee....rriseekvie...lLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223 
                  v l++p     ++ Gr GsGk+sl+  +  ++    +g i++dg  + +    + +   +  ++++ q+  LF+  + ++nL    k +  +       +s + v +   l g+e  ++   g+Ls G +q + ++RAl+ + ++L++De  +++D +  +++   +++   e  + ++ v+H ld v    d++ vl +G+v   g++ ++l+ k
  MMETSP1061-20121228|6394_1 1388 VTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEiEPKGAIEIDGIDIRS----VSMEKLRDSLAIIPQDPVLFAG-TLASNLDATGKATPDDMwkalEAASPDLVRHfktLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGHVLEYGSPSDLLNIK 1597
                  566677667889***********98777666551679*******87655....556788999***********96.789999875555443331111234555454322155788889999******************************************************************987.59***************99998655 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   5.1e-14   3.7e-12      22     209 ..     630     825 ..     625     839 .. 0.72
   2 !   18.6   0.0   3.1e-06   0.00022      23      58 ..    1384    1419 ..    1371    1437 .. 0.89
   3 !   26.5   0.0   1.2e-08   8.5e-07     150     208 ..    1507    1566 ..    1503    1574 .. 0.90

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 5.1e-14
   TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrh....egeivdlvkaserevlevRrktigyvsqfLrviPRvsalevv...........aepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadr..PiLLLdePtasLdaanrkvvve.likeakargaaligifhde 209
                 p+l +v+l+v++Ge+va+ G+ G+Gks+l+k++ ++  p    ++  +      e ++ v +  r  +++   ++gy sq    +P+ + ++ +           ++++   G+++++a     +l + +++ e+      +  sGG + Rv +aral  d+   +L+Ld+  a+Lda    +v e +ik+aka+ aa i +  d 
  MMETSP1061-20121228|6394_1 630 PALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPKIVVESNidsdAKESTNPVDLMSRPEVTLH-GNVGYCSQEA-WVPKGTLRDAIvfgrdydeeryTQAVYDAGMDQDIAS---GTLSSEMDVGEK-----GSSLSGGQRARVALARALYGDQntKVLILDDCLAALDARVGSIVFErVIKRAKASKAATILVTNDP 825
                 78899*******************************99875444332211112345556777777777777.89******98.8899998886522222211111233333344433332...344556677666.....57788*************98762269**************999997689********999776665 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 3.1e-06
   TIGR02324   23 vlkevsleveaGelvalsGksGaGkstllkslyanY 58  
                  vl+ev+l+v  G  + + G++G+Gks+ll +l++  
  MMETSP1061-20121228|6394_1 1384 VLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIV 1419
                  899*****************************9865 PP

  == domain 3    score: 26.5 bits;  conditional E-value: 1.2e-08
   TIGR02324  150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelik.eakargaaligifhd 208 
                   s G +q + +arali++  iL+Lde t+s+da++ + v + i+ e  ++g+++i++ h 
  MMETSP1061-20121228|6394_1 1507 LSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRkEFVEKGVSVITVAHR 1566
                  6889*********************************9**9997256899*******995 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.2e-05    0.0016      16      53 ..     632     669 ..     625     692 .. 0.80
   2 !   19.9   0.0   1.4e-06    0.0001     126     185 ..     761     823 ..     737     836 .. 0.75
   3 !   51.7   0.0   2.5e-16   1.8e-14      14     189 ..    1383    1568 ..    1371    1577 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.2e-05
   TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkpe 53 
                 l ++++++ +Ge+++v+Gp G+GK++L++ + G l+p 
  MMETSP1061-20121228|6394_1 632 LCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPV 669
                 678999***********************998877665 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 1.4e-06
   TIGR01189 126 aqLsAGqkrRlalarLll..skaplWiLDEPttalDkeg.vellaellaaHlargGivllath 185
                 ++Ls Gq+ R+alar l   ++ ++ iLD+ ++alD++    +++++++   a   +++l t 
  MMETSP1061-20121228|6394_1 761 SSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVgSIVFERVIKRAKASKAATILVTN 823
                 58*************776224568************985266777777655555555555444 PP

  == domain 3    score: 51.7 bits;  conditional E-value: 2.5e-16
   TIGR01189   14 vlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpe.sGevelndkelaeqrdelaeellylgHldglKaeLsalEnLk.........fyaallqseqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdlg 189 
                   +l+++++++ +G +l v+G+ G+GK++LL +l  +++ e +G +e+++ ++  +  e+ +++l +  +d +  + + + nL+          ++al +++   v +  +  gL+        +Ls Gq++ + lar l++k ++ +LDE t ++D+++ +++++++++   + G+ +++  + l+
  MMETSP1061-20121228|6394_1 1383 LVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASNLDatgkatpddMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLD 1568
                  6899**************************999998876549*******999988777667666666677777777777777611111111255555555554444444455666666677789********************************************999999999998877776 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.3     1e-12   7.3e-11       1     188 [.     637     839 ..     637     861 .. 0.69
   2 !    7.4   0.0    0.0096      0.69       2      44 ..    1391    1434 ..    1390    1458 .. 0.85
   3 !   38.6   0.0   2.7e-12   1.9e-10     112     202 ..    1505    1596 ..    1472    1603 .. 0.92

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 1e-12
   TIGR03771   1 lsvdkGellgllGpnGaGkttllrailg.likvakGsvkvagkssrkgrreiGyvpqrhefawdfpi...dveqtvlsGragliGllrrpkkad..faavadalervklte..l.adrpvGe....lsGGqrqrvlvarala..vkpslllldepftGldlpsqellvelfeelagegtai.lmtthdlaeavatcdrvvllng 188
                 l+vd+Ge+++++Gp G+Gk++l++a+lg l++v k  v+ +  s +k  ++   +  r e +    +   + e  v +G  +   ++ r   ++   +av da    +++   l ++  vGe    lsGGqr rv +aral    + ++l+ld+ ++ ld      + e +++ a++ +a  +++t d +     cdrvvl+  
  MMETSP1061-20121228|6394_1 637 LKVDSGEVVAVVGPVGSGKSALVKAVLGeLTPVPKIVVESNIDSDAKESTNPVDLMSRPEVTLHGNVgycSQEAWVPKGTLRDAIVFGRDYDEEryTQAVYDAGMDQDIASgtLsSEMDVGEkgssLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAAtILVTND-PSLPRRCDRVVLMGS 839
                 689************************9566666655554444444444444445566777665444211445566777777666666654433213566666444443321131456677655569**************6326789**************99999998888887766550555555.777899******975 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0096
   TIGR03771    2 svdkGellgllGpnGaGkttllrailglikva.kGsvkvagkss 44  
                  sv +G  lg++G  G+Gk++ll +++ +++ + kG ++++g   
  MMETSP1061-20121228|6394_1 1391 SVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDI 1434
                  778999*********************9986439****999654 PP

  == domain 3    score: 38.6 bits;  conditional E-value: 2.7e-12
   TIGR03771  112 GelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelf.eelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlqda 202 
                  G+ls Gqrq + +aral  k ++l+lde  + +d  + +++ + + +e+ ++g +++ ++h l   +   +  vl  g+v+  g+p++l + 
  MMETSP1061-20121228|6394_1 1505 GNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIrKEFVEKGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNI 1596
                  99*************************************9998652799**************99999888889999***********9875 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   2.1e-09   1.5e-07     300     502 ..     632     838 ..     630     848 .. 0.77
   2 !   13.3   0.0   6.8e-05    0.0049       3      51 ..    1370    1420 ..    1368    1430 .. 0.77
   3 !   42.8   0.0   7.7e-14   5.6e-12     427     517 ..    1506    1595 ..    1496    1605 .. 0.94

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.1e-09
   TIGR03269 300 vdnvslevkekeifGlvGtsGaGkttlskilaGvleptsG.evevrvGdewvdmtkkg.vlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdelakrkavivlkavGfdeekakeildkl......pdelseGerhrvalaqvli..keprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmr 502
                 + +v+l+v  +e+  +vG  G+Gk++l k ++G l p     ve  +  +  + t++  +++r  ++     lh + +  +  + +   t   ++ +  ++ + +   ++  +G+d++ a   l          + ls G+r rvala+ l   ++ +++ild+   ++d      v e ++k  +  + + ++v+ d  + +  cdr+ lm 
  MMETSP1061-20121228|6394_1 632 LCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPKiVVESNIDSDAKESTNPVdLMSRPEVT-----LHGNVGYCSQEAWVPKGTLRDAIVFGRDYDEERYTQAVYDAGMDQDIASGTLSSEmdvgekGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLPR-RCDRVVLMG 838
                 5679*****************************9999754145667777777777764134444444.....55555555555555444444444567777777878888899*****999888654111111568***************8446789*************99999999999988888999999999998765.6******96 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 6.8e-05
   TIGR03269    3 venltkkfdgle..vlknisleleeGevlGilGksGaGksvllhllrGlde 51  
                   +n+ +k++     vl+++ l +  G  lG++G++G+Gks ll  l  + e
  MMETSP1061-20121228|6394_1 1370 FKNVSMKYNPSSplVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVE 1420
                  6889999986543399***********************876655444444 PP

  == domain 3    score: 42.8 bits;  conditional E-value: 7.7e-14
   TIGR03269  427 elseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeive 517 
                  +ls+G+r  + la+ lik+ +i++lde t ++d  t ++v+++i k   e + + + v+h +d v    d++a++ +G++++ G+p ++++
  MMETSP1061-20121228|6394_1 1506 NLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGHVLEYGSPSDLLN 1595
                  79**************************************************************987.6*****************99885 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.2   1.6e-09   1.1e-07       4     199 ..     634     837 ..     631     842 .. 0.78
   2 !   56.0   0.0   1.1e-17   7.9e-16       3     216 ..    1386    1596 ..    1384    1609 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.6e-09
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailglldk.eltktsGeilldgke.laalalrgreialilqn....PrsafnPlltikeqlletlkaleklskqak..elivealeavgLeeaeevlkkypfelsGGmlqRvmialall..leaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavm 199
                 dvnl++  g+v+a+vG  GsGks   +a+lg l +  ++ ++ +i  d ke  +++ l +r   ++  n     ++a+ P  t+++ ++      e+ + qa   + + + +    L+    v +k    lsGG   Rv +a al    ++ +li D+  ++lD+ v   v + + +  + +  + +l+t D +   +  d v++m
  MMETSP1061-20121228|6394_1 634 DVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPvPKIVVESNIDSDAKEsTNPVDLMSRPEVTLHGNvgycSQEAWVPKGTLRDAIVFGRDYDEERYTQAVydAGMDQDIASGTLSSEMDVGEK-GSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSL-PRRCDRVVLM 837
                 8*****************************988762577889999999887245666766655555444222267899999999999998888877777666421567788888889877777666.779****999999988887335789***************************************9764.3444555555 PP

  == domain 2    score: 56.0 bits;  conditional E-value: 1.1e-17
   TIGR02770    3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrg..reialilqnPrsafnPll.tikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqe 216 
                  ++v ls+  g  l++vG  GsGks   l++  + +   ++ +G i +dg ++ ++++ +   ++a+i q+P+     l  ++    + t   + k  + a   +v+ ++  g    e  +++   +ls G  q + +a al+ ++ +l+ De t+ +D+++  +v +++++   ++g++++ ++h l  v    d++av+ +G+++e g++++l++ 
  MMETSP1061-20121228|6394_1 1386 NEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVE---IEPKGAIEIDGIDIRSVSMEKlrDSLAIIPQDPVLFAGTLAsNLDATGKATPDDMWKALEAASPDLVRHFKTLGGL--ESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGHVLEYGSPSDLLNI 1596
                  6899********************99999999998...999***********99965541157999*****9766665515666667777777777788888888888876543..345788899**************************************************************98866.49****************999864 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0         6   4.3e+02      51     118 ..     221     284 ..     184     324 .. 0.58
   2 ?   -3.4   0.0       6.9   4.9e+02     224     272 ..     413     462 ..     400     471 .. 0.83
   3 !   41.3   0.0     2e-13   1.5e-11     469     641 ..     632     826 ..     612     838 .. 0.80
   4 !   40.1   0.0   4.8e-13   3.4e-11     452     640 ..    1367    1567 ..    1281    1579 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 6
   TIGR00954  51 eelkkesknselekkkkkalvdkeflgklkvllkiliprvfckellllilqavlLviRtllsvyvakl 118
                 +++k  ++ +e ++++   ++d++  +   vllk ++ ++++    ll++  +l +i t+++ +   l
  MMETSP1061-20121228|6394_1 221 ARTKARHRLEEQKQQALYSNKDGVKNSESLVLLKAIVRNQKS----LLLTTGILRLINTFVQAFPSLL 284
                 334444443344444444555666666667777777777776....5556666666666665543333 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 6.9
   TIGR00954 224 lDlilysfkLltalgsvgaagllal.vlllsgvvLrklrpplgkltveea 272
                 l +++y + L + lgs+ a gl +l  ++ +++++ +++ +l++l  e  
  MMETSP1061-20121228|6394_1 413 LQIMIYTYLLFQCLGSSVAWGLAVLlSVIPTNSIVLRISDRLARLENEAR 462
                 679999999*****999988887765678899999999*****9987755 PP

  == domain 3    score: 41.3 bits;  conditional E-value: 2e-13
   TIGR00954 469 ieeLsfevksGnhlLiiGPnGcGKsslfR.ilgelWPvyg.....................glltkpeegklFyvPqrPYmslgtlRdqiiYPds.sedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfy..HkPkfavLDEctsAvsvdvEdklyel....akevgitllsvshrks 641
                 + +++++v sG+ + ++GP G GKs+l + +lgel Pv                        +  +  +g++ y  q  ++ +gtlRd i++     e+  ++ + d+ + q +    L+     e+    v +    LsgG++ R+a+AR +y     k  +LD+c +A+   v   ++e     ak  + + + v++ +s
  MMETSP1061-20121228|6394_1 632 LCDVNLKVDSGEVVAVVGPVGSGKSALVKaVLGELTPVPKivvesnidsdakestnpvdlmSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGRDyDEERYTQAVYDAGMDQDIASGTLSS----EM---DVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERvikrAKASKAATILVTNDPS 826
                 45789*********************98759*******9999**************99777677777899*********************975515566677888888887776665554....43...35677789****************44467999********99999888886511114455555566666555 PP

  == domain 4    score: 40.1 bits;  conditional E-value: 4.8e-13
   TIGR00954  452 gikfenipl.vtPegdvlieeLsfevksGnhlLiiGPnGcGKssl....fRilgelWPvyg.........glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeev..kLedllereggwda.vqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelak....evgitllsvshrk 640 
                  g+ f n+ +   P+   +++e+++ v+ G+ l ++G  G GKssl    fRi+ e+ P  +          + +   +  l  +Pq P +  gtl        s  d + +   d d+ + Le    +L    +  gg+++ + +    Ls G++q i +AR +  k k  vLDE+ts v  + ++++ ++++    e+g+++++v+hr 
  MMETSP1061-20121228|6394_1 1367 GVSFKNVSMkYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLlltlFRIV-EIEPKGAieidgidirSVSMEKLRDSLAIIPQDPVLFAGTLA-------SNLDATGKATPD-DMWKALEAAspDLVRHFKTLGGLESeISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRkefvEKGVSVITVAHRL 1567
                  6778888873469999****************************722225554.66676669999997766666667889***************6.......556777776655.55666665422566666777777543999999********************************98877776666652222689********94 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   5.8e-13   4.2e-11      22     210 ..     634     839 ..     628     857 .. 0.71
   2 !   41.5   0.0   2.4e-13   1.7e-11       9     225 ..    1372    1596 ..    1367    1605 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 5.8e-13
   TIGR01288  22 dlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvparar........larakigvvpqfdnldref.....tvrenllvfgryfgls..trei.eevipsllefarleskadv..rvadlsggmkrrltlaralind..pqllildepttgldpharhliwerl..rsllargktilltthlmeeaerlcdrlcvlea 210
                 d+ + + +ge+  ++gp g+gks++ + vlg  +p   ki v  +++ + a+        ++r ++ +  +     +e      t r+  +vfgr +  +  t+ + ++ + + +    l s  dv  + ++lsgg + r++laral  d   ++lild+  + ld     +++er+  r+  ++  til+t        r cdr++++ +
  MMETSP1061-20121228|6394_1 634 DVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPV-PKIVVE-SNIDSDAKestnpvdlMSRPEVTLHGNVGYCSQEAwvpkgTLRD-AIVFGRDYDEEryTQAVyDAGMDQDIASGTLSSEMDVgeKGSSLSGGQRARVALARALYGDqnTKVLILDDCLAALDARVGSIVFERVikRAKASKAATILVTND--PSLPRRCDRVVLMGS 839
                 6788999************************99995.455442.23333333001111114565555555555555554111114554.579***997531133331455666667778999999855679****************98833579*********************766888899999999986..467899999988765 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 2.4e-13
   TIGR01288    9 gvsksyg..dkvvvndlsftiaagecfgllgpngagkstiarlvlglispd.egkitvlgepvpa.rarlarakigvvpqfdnldreftvrenllvfgryfgls.treieevipsllefar....leskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrs.llargktilltthlmeeaerlcdrlcvleagrkiaegrpdalide 225 
                  +vs  y     +v+n++++++  g  +g++g  g+gks++   ++ ++  + +g i + g ++ +  +   r  + ++pq   +    t   nl   g+    +  + +e++ p l+   +    les       +ls g ++ + larali+  ++l+lde t+ +d ++ + + + +r  ++ +g +++  +h ++      d++ vl +g  +  g p  l++ 
  MMETSP1061-20121228|6394_1 1372 NVSMKYNpsSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSvSMEKLRDSLAIIPQD-PVLFAGTLASNLDATGKATPDDmWKALEAASPDLVRHFKtlggLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKeFVEKGVSVITVAHRLDTV-IGYDKIAVLGQGHVLEYGSPSDLLNI 1596
                  5555554115689*************************99988888776543899999888776624567899*******5.555678999*******9986541589*******9864322333899999999********************************************9963677899999999988766.457************99***999875 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.0   2.3e-11   1.7e-09      42     221 ..     634     821 ..     628     837 .. 0.74
   2 !   41.4   0.8   2.6e-13   1.9e-11      39     254 ..    1384    1595 ..    1376    1606 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 2.3e-11
   TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravng.lnpvsrGkvlvk.dedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakae..rrkrveeqlelvglaeWad..kkvgelsGGmqqrvGlarafate..adillmdePfsaldPliraklqdellelqkklkktivfv 221
                 d++l+v+ Ge++ ++G  GsGks+l++av g l pv +  v+ + d d +     +d  +  ++  +       + a +P  t+++ + fG + +     +      +++ +    l++  d  +k   lsGG + rv lara+  +  +++l++d+ ++ald  + + + + +++  k  k + ++v
  MMETSP1061-20121228|6394_1 634 DVNLKVDSGEVVAVVGPVGSGKSALVKAVLGeLTPVPKIVVESNiDSDAKESTNPVDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGRDYDEERYTQavYDAGMDQDIASGTLSSEMDvgEKGSSLSGGQRARVALARALYGDqnTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILV 821
                 899*************************9765999998877755233444444445666666666665445556679**************99876555440045556666766677766553367888***************7542278************9887776666666555555555555 PP

  == domain 2    score: 41.4 bits;  conditional E-value: 2.6e-13
   TIGR03415   39 gvadasldveeGeilvlmGlsGsGkssllravnglnpvs.rGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenv.afGl....elsGvakaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivl 254 
                    ++++l+v  G  l ++G +GsGkssll ++ ++  +  +G +++      +d+ +++ ++lr+     ++++ q   l+   t++ n+ a G     ++    +a   + v++   l gl++   +  g+ls G +q + lara+  +++il++de  s++d    +++qd + +   +    ++ v+h ld  +   ++ia++ +G+++ +g+p +++ 
  MMETSP1061-20121228|6394_1 1384 VLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEID----GIDIRSVSMEKLRD----SLAIIPQDPVLFAG-TLASNLdATGKatpdDMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIGY-DKIAVLGQGHVLEYGSPSDLLN 1595
                  56899***************************999988547888874....47777777777664....67888888777664.4444442444322227888888999999***99*********************************************************988777778899********98654.79***************99875 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.5   1.1e-07   8.2e-06      16     196 ..     631     820 ..     624     822 .. 0.70
   2 !   10.5   0.0   0.00044     0.032     402     489 ..     761     850 ..     743     854 .. 0.82
   3 !   54.4   0.2   2.1e-17   1.5e-15      16     218 ..    1384    1583 ..    1369    1593 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.1e-07
   TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmk.vlsgvyphGtydGeilfe......geelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlra.kellrelkldasnvtrpvsdlGlGqqqlveiakal..nkqvrllildepsaslteketeilld.iirdlkakgvacvy 196
                 al +++lk+++Ge+v++ G  G+Gks+l+k vl  + p  +   e   +       +++   s  +   +G v    + + v++ ++ + i +G++   +     ++       +++      ++++v    s l +Gq+  v +a+al  ++++++lild+  a+l ++  +i+++ +i+  ka   a + 
  MMETSP1061-20121228|6394_1 631 ALCDVNLKVDSGEVVAVVGPVGSGKSALVKaVLGELTPVPKIVVESNIDsdakesTNPVDLMSRPEVTLHGNVGYCSQEAWVPKGTLRDAIVFGRDYDEER--YTQAVYDAGMdQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALygDQNTKVLILDDCLAALDARVGSIVFErVIKRAKASKAATIL 820
                 8899*************************96677788876654444444000000344444444455555555444445789999999******9987765..222222222303444444445666777788999*************555789************9999998876488888888887775 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00044
   TIGR02633 402 arlsGGnqqkavlaklll..lnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklkadlvnde 489
                 ++lsGG++ +  la+ l    n +vlild+    +d      ++  + + a+   a  ++ ++ + +   +drv+++g    k++ v+++
  MMETSP1061-20121228|6394_1 761 SSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLPRRCDRVVLMGSSSTKSSAVDSN 850
                 579999999999*999973357899*****999999999888988877777777666666667788889999999999999998888765 PP

  == domain 3    score: 54.4 bits;  conditional E-value: 2.1e-17
   TIGR02633   16 aldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkld...asnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiir.dlkakgvacvyishkleevkavsdtisvirdGq 218 
                   l++++l + +G  +++ G  G+Gks+l+  l  +    + +G i  +g ++++ s+ +  r  ++ii q+ +l    +++ n+    + t +      +a+   + +l+r+ k     +s+ +   ++l  Gq+ql+ +a+al k+ ++l+lde ++s+ ++  + + d ir ++ +kgv+ + ++h+l+ v    d+i+v+ +G+
  MMETSP1061-20121228|6394_1 1384 VLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEI-EPKGAIEIDGIDIRSVSMEK-LRDSLAIIPQDPVLFAG-TLASNLDATGKATPDD---MWKALEAASPDLVRHFKTLgglESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRkEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGH 1583
                  6899************************9999988765.56899999**9999988755.67899******999876.6788887777777666...34556666677777776531114566667789999****************************99998888887753799**************9976.69999998885 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   1.6e-11   1.1e-09       3     206 ..     619     827 ..     617     840 .. 0.84
   2 !   41.0   0.1   4.4e-13   3.2e-11      14     236 ..    1383    1597 ..    1369    1604 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 1.6e-11
   TIGR01978   3 ikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghek...yevtsGeiklkg.qdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlal..lePklaiLDeiDsGlDvDalkivaeg.vnklreeekalliithyerl 206
                 ikd  v   d + L ++nl+v++Gev+a++Gp GsGks L+k++ g+ +     v++ +i  +  ++++ ++   r +  l+  + + ++ + v +   lr+a+   r++++e+   ++ +   +++ +++ +l++e+   +  +  sGG + r  + + +    + k+ iLD+  + lD     iv+e  +++ + ++ a++++t    l
  MMETSP1061-20121228|6394_1 619 IKDGEVAPPDSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTpvpKIVVESNIDSDAkESTNPVDLMSRPEVTLHGNVGYCSQEAWVPK-GTLRDAIVFGRDYDEER-YTQAVYDAGMDQDIASGTLSSEMDVGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFERvIKRAKASKAATILVTNDPSL 827
                 6777777788999*********************************86522245778889887515677799999999999999999999999876.569*****999766555.79999************************************998776335789*************999999986167778889999999987655 PP

  == domain 2    score: 41.0 bits;  conditional E-value: 4.4e-13
   TIGR01978   14 eiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvelakele 236 
                   +L++++l+v +G +  ++G+ GsGks L  +l    ++e  +G i+++g d+ ++++ e+ r  l +  q p+  +G  ++++  ++ +a+   +  ++l++++  +l+++   l  l++e++e   n   s G ++   + + ++ + k+ +LDe+ s +D  + + v +++ k    ek++ +it  +rl   i  d++ vl +G++++ G+ + + +++
  MMETSP1061-20121228|6394_1 1383 LVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIE-PKGAIEIDGIDIRSVSM-EKLRDSLAIIPQDPVLFAGTLASNL-DATGKATP-DDMWKALEAAS-PDLVRHFKTLGGLESEISEGGGN--LSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEF-VEKGVSVITVAHRLDTVIGYDKIAVLGQGHVLEYGSPSDLLNIK 1597
                  489******************************9887776.58*************97.67899**************877765.33334444.33344444443.35666666666778888887766..799*9999999999999************************997633.35677777777899*********************987666665 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00015     0.011      17      57 ..     631     671 ..     627     693 .. 0.82
   2 !   13.0   0.0   0.00015     0.011     129     187 ..     758     821 ..     735     845 .. 0.72
   3 !   47.4   0.0   5.3e-15   3.8e-13       6     211 ..    1371    1585 ..    1367    1608 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00015
   TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsG 57 
                 al +v ++++ Ge+v  +GP G+Gks+l+k + g l++   
  MMETSP1061-20121228|6394_1 631 ALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPK 671
                 678999*************************9999988654 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 0.00015
   TIGR03522 129 kkigalskGyrqrvGlakall..hdPkvlildePttGldPnq.lveirevikeiakdk..tvil 187
                  k + ls G r rv la+al    + kvlild+  + ld     +   +vik+    k  t+++
  MMETSP1061-20121228|6394_1 758 EKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVgSIVFERVIKRAKASKaaTILV 821
                 56789***************9334579************8632344566777654444114443 PP

  == domain 3    score: 47.4 bits;  conditional E-value: 5.3e-15
   TIGR03522    6 sdlsklyg..kqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkad.sGsvavagedvlknsle.vrkniGylPehnPlyldlyvreylefsa.....alyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk..tvilsthimqevealcdrviiinkGkiv 211 
                  +++s +y   +  +l+ev++++ +G+ +G +G  G+Gks+l+  l   ++ +  G+++++g+d+   s+e  r ++  +P+   l+      +  + ++     +++k  + +  + v+++  l Gl++e     g+ls+G rq + la+al+ + k+l+lde t+ +d     ++++ i++  ++k  +vi  +h +  v    d++ ++ +G+++
  MMETSP1061-20121228|6394_1 1371 KNVSMKYNpsSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVSMEkLRDSLAIIPQDPVLFAGTLASNLDA-TGkatpdDMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKgvSVITVAHRLDTVIG-YDKIAVLGQGHVL 1585
                  566666651134589*************************99888777765437***********9998637899*****9999998877766543.3211222799999999999*****************************************************9999999999987655551145555566655543.3566666666655 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.6e-05    0.0026      15      53 ..     631     669 ..     627     693 .. 0.87
   2 ?    1.9   0.0      0.45        32     121     160 ..     759     801 ..     748     823 .. 0.73
   3 !   53.7   0.0   6.7e-17   4.8e-15       4     201 ..    1371    1583 ..    1368    1593 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.6e-05
   TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrkt 53 
                 ++ +v+lkv++ +v +++Gp G+Gks+l+k + G l++ 
  MMETSP1061-20121228|6394_1 631 ALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPV 669
                 5779****************************9998875 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.45
   TIGR03740 121 kakqfslGmkqrlGiaiall..nkPkllildePtnGldP.lGi 160
                 k + +s G + r+ +a al   ++ k+lild+    ld  +G 
  MMETSP1061-20121228|6394_1 759 KGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDArVGS 801
                 56778899999********8445789********999963454 PP

  == domain 3    score: 53.7 bits;  conditional E-value: 6.7e-17
   TIGR03740    4 knlskkfkkq..avvnnvslkvkknsvygllGpnGaGkstllklltGllr.ktsGeilldg...rewtrkdlkkiGsliesPaly......enltarenlkvrtlllglpesrieev...lkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelrelik.sfpekGitvilsshilsevelladhiGiiseGk 201 
                  kn+s k++     v+n+v+l+v+  s  g++G  G+Gks+ll  l  +++ + +G i +dg   r+++ ++l++  ++i + ++        nl a+       + ++l+ +  + v    ++ +le++     +++s G +q + +a al++k k+l+lde t  +d    q++++ i+  f ekG++vi  +h l  v    d+i ++ +G+
  MMETSP1061-20121228|6394_1 1371 KNVSMKYNPSspLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEiEPKGAIEIDGidiRSVSMEKLRDSLAIIPQDPVLfagtlaSNLDATGKATPDDMWKALEAASPDLVrhfKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRkEFVEKGVSVITVAHRLDTVIG-YDKIAVLGQGH 1583
                  677777765411699**************************9999999973679****99844456788899998899976555402111134444444444444566666555544110445678888889999*****************************************998637**************998854.58888887775 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.4e-05     0.001      17      54 ..     631     668 ..     618     686 .. 0.88
   2 ?    1.9   0.0      0.45        32     137     177 ..     756     798 ..     733     836 .. 0.76
   3 !   49.8   0.0   1.1e-15   7.7e-14      17     225 ..    1384    1589 ..    1368    1598 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.4e-05
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrp 54 
                 al d++l+v++ge+ +++Gp G+Gk+ l+ ++ G   p
  MMETSP1061-20121228|6394_1 631 ALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTP 668
                 899******************************99876 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.45
   TIGR03411 137 adkkaglLshGqkqwLeigmllv..qepkllllDePvaGmtde 177
                 + +k ++Ls Gq+ ++ ++  l   q++k+l+lD+  a + ++
  MMETSP1061-20121228|6394_1 756 VGEKGSSLSGGQRARVALARALYgdQNTKVLILDDCLAALDAR 798
                 4567899*******99999888644899*******99988665 PP

  == domain 3    score: 49.8 bits;  conditional E-value: 1.1e-15
   TIGR03411   17 alndlslsveegelrviiGpnGaGkttllDvitGktrpd.eGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellke..lakersvvvvehDmefvrelaekvtvlheGkvlaeGs 225 
                   ln+++lsv +g+   ++G  G+Gk+ ll  +   ++ + +G + ++g d+++++ +++ r  ++   q p +f   t + nl+ + ka   + + + + l++++ + +++  +l gLe++ ++  g+Ls Gq+q + ++  l++++k+l+lDe ++ + ++  +++ + +++  ++k  sv+ v h ++ v  ++ k++vl +G+vl  Gs
  MMETSP1061-20121228|6394_1 1384 VLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEIEpKGAIEIDGIDIRSVSMEKL-RDSLAIIPQDPVLFA-GTLASNLDATGKA---TPDDMWKALEAASPDLVRHFKTLGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKefVEKGVSVITVAHRLDTVIGYD-KIAVLGQGHVLEYGS 1589
                  689************************99999887775438***********9998776.67788899***9996.5899***976544...44555566688999999999999*********************************************99999999999765588999************9885.79**********998 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   6.1e-08   4.4e-06      41     227 ..     632     826 ..     613     842 .. 0.73
   2 !   43.1   0.1   6.5e-14   4.7e-12      39     255 ..    1383    1594 ..    1359    1598 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 6.1e-08
   TIGR00955  41 lknvsGvaksGellAvlGsSGaGKtTLlnalafrsek..glkvsgd.........vllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalasell..tdPilLfcDEPTsGLDsfsaasvvk.vLkklaqkgktviltiHQPs 227
                 l +v  ++ sGe++Av+G+ G+GK+ L++a+    +    + v+++           ++ +   + +++ + +y  q +  +p+ t r++++f      +r +t+    + +++ + +  L++  +  +g +g   +lSgG+r R+ala  l   ++ ++L++D+  + LD+   + v + v+k+   +    il+   Ps
  MMETSP1061-20121228|6394_1 632 LCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPvpKIVVESNidsdakestNPVDLMSRPEVTLHGNVGYCSQ-EAWVPKGTLRDAIVFGRDYDEER-YTQAVYDAGMDQDIASGTLSS--EMDVGEKGS--SLSGGQRARVALARALYgdQNTKVLILDDCLAALDARVGSIVFErVIKRAKASKAATILVTNDPS 826
                 556677899*******************9987655431122222221111222224455555556678889999988.679************99988666.788888899999999988876..566897775..***************99434689*************99988875255555444444455555555 PP

  == domain 2    score: 43.1 bits;  conditional E-value: 6.5e-14
   TIGR00955   39 ellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekvea...kemraisayvqqdd.lfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvL.kklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeav 255 
                   +l++v+  + +G  l v+G  G+GK+ Ll +l      +++ +g++ ++G  + +   +++r   a + qd  lf +tl+ + + + +a      +   k  +++  +++++ +     +  i   g    lS G+r+ + la  l+++ ++L++DE Ts+ D+ + ++v  ++ k++ +kg +vi++ H         +dki +l +G+v   Gsp++++
  MMETSP1061-20121228|6394_1 1383 LVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRI--VEIEPKGAIEIDGIDIRSvsmEKLRDSLAIIPQDPvLFAGTLASNLDATGKA----TPDDMWKALEAASPDLVRHFKTLGGLESEISEGGG--NLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIrKEFVEKGVSVITVAHRLD--TVIGYDKIAVLGQGHVLEYGSPSDLL 1594
                  57999*************************887655..456666699****877651115667778999999736677887654444443....33335556677788999999999999999997775..8****************************************9983579************854..55589************99*999875 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00016     0.011     334     374 ..     628     668 ..     591     675 .. 0.79
   2 !   11.5   0.0   0.00025     0.018     160     194 ..     761     797 ..     734     826 .. 0.63
   3 !   36.4   0.0   7.1e-12   5.1e-10     324     530 ..    1369    1605 ..    1365    1621 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00016
   TIGR03719 334 dklliddlsfklpkggivGviGpnGaGkstlfklitgkekp 374
                 d   + d+++k+  g +v v+Gp G+Gks+l+k + g+ +p
  MMETSP1061-20121228|6394_1 628 DSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTP 668
                 5555678999***********************99998665 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 0.00025
   TIGR03719 160 eklsGGekrrvalcrlll..ekPdlllldePtnhlda 194
                 ++lsGG++ rval+r l   ++  +l+ld+    lda
  MMETSP1061-20121228|6394_1 761 SSLSGGQRARVALARALYgdQNTKVLILDDCLAALDA 797
                 4455555555555555542234445555555555555 PP

  == domain 3    score: 36.4 bits;  conditional E-value: 7.1e-12
   TIGR03719  324 evenlskafg..dklliddlsfklpkggivGviGpnGaGkstlf.klitgkekpdsGelki.Getvklayvdqsrdald..dnktv.we.eisdGldll.......klgkvevnsrayvgrfnfkGa...dqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeall.ef..aGcavv.ish..dr.wfldriat....hilafegdskve.ffeGnyeeye 530 
                   ++n+s +++  + l+++++++++p+g+ +Gv+G  G+Gks l+  l    e + +G+++i G  ++   +++ rd+l   ++  v +  +++  ld         +    e  s   v +f+  G    +     g+ls G+r+ + la+ l +++ +l+lde t  +d +t + +++++  ef   G+ v+ ++h  d     d+ia     h+l + + s++    +G++++  
  MMETSP1061-20121228|6394_1 1369 SFKNVSMKYNpsSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLlTLFRIVEIEPKGAIEIdGIDIRSVSMEKLRDSLAiiPQDPVlFAgTLASNLDATgkatpddMWKALEAASPDLVRHFKTLGGlesEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRkEFveKGVSVItVAHrlDTvIGYDKIAVlgqgHVLEYGSPSDLLnIKNGEFRSLV 1605
                  67888888873246899***********************9876145556778889****9556677777889999875444444415324555555441111111234457889999****9888511134456789******************************************962673336555514553322123577774444477777777765414467776654 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.6e-08   3.3e-06      19     178 ..     633     799 ..     628     859 .. 0.75
   2 !   13.5   0.0   0.00012    0.0083      21      49 ..    1388    1417 ..    1368    1442 .. 0.74
   3 !   14.8   0.0   4.4e-05    0.0032     141     220 ..    1506    1588 ..    1497    1598 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.6e-08
   TIGR02323  19 crvsf.lypGevlgivGesGsGkstllkalaarllad.....aGevtyesrsrelellalseaerrlllrtewGlvhqn...pr.GlrmevsaGanigerllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfmeptGGlvsvqarl 178
                 c v++ +  Gev+++vG  GsGks+l+ka+ ++l++      + ++  + ++ ++ +  +s +e    l  + G   q+   p+  lr  +  G +  e   +  +   G  ++ a+     e+d    k +++sGG + r+ +ar+l    +  ++     l +++ar+
  MMETSP1061-20121228|6394_1 633 CDVNLkVDSGEVVAVVGPVGSGKSALVKAVLGELTPVpkivvESNIDSDAKESTNPVDLMSRPEVT--LHGNVGYCSQEawvPKgTLRDAIVFGRDYDEERYTQAVYDAGMDQDIASGTLSSEMDV-GEKGSSLSGGQRARVALARALYGDQNTKVLILDDCLAALDARV 799
                 788888899*************************98622222456666667767777788888766..77889***99833346569***********99999999999*9999999777788888.55999***************98755433333334455555554 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 0.00012
   TIGR02323   21 vsf.lypGevlgivGesGsGkstllkalaa 49  
                  v++ + pG  lg+vG +GsGks+ll +l  
  MMETSP1061-20121228|6394_1 1388 VTLsVPPGSTLGVVGRTGSGKSSLLLTLFR 1417
                  666678*******************98864 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 4.4e-05
   TIGR02323  141 afsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth.lavarllaqrllvmkqGrvvesG 220 
                  ++s G +q + +ar+l+ + +++++ e t  +    + ++   +r+  +e g++vi v+h l  + +  +++ v+ qG+v+e G
  MMETSP1061-20121228|6394_1 1506 NLSQGQRQLICLARALIKKSKILVLdEATSSVdAQTDQQVQdTIRKEFVEKGVSVITVAHrLDTV-IGYDKIAVLGQGHVLEYG 1588
                  57999****************98885777766433334444688999999**********66555.66689***********98 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.8e-06   0.00034     354     393 ..     629     668 ..     524     685 .. 0.91
   2 !    6.6   0.0    0.0072      0.52     468     540 ..     761     835 ..     743     846 .. 0.83
   3 !   27.1   0.0   4.4e-09   3.2e-07     323     547 ..    1354    1584 ..    1331    1588 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 4.8e-06
   TIGR01194 354 gfalGpidlriasGelvyivGenGcGkstliklllGlyip 393
                 + al  ++l++ sGe+v +vG  G Gks+l+k +lG   p
  MMETSP1061-20121228|6394_1 629 SPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTP 668
                 458999*****************************98777 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0072
   TIGR01194 468 tdlstGqrkrlalvnayleer..pvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrli 540
                 ++ls Gqr r+al  a   ++   vl+ld+  a  d     + +e ++   k    + ++++ d    +  dr++
  MMETSP1061-20121228|6394_1 761 SSLSGGQRARVALARALYGDQntKVLILDDCLAALDARVGSIVFERVIKRAKASKAATILVTNDPSLPRRCDRVV 835
                 579*************987752269***********************999988777778888887777777776 PP

  == domain 3    score: 27.1 bits;  conditional E-value: 4.4e-09
   TIGR01194  323 envllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstli.klllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqp..dekkqasldqattylsrl..eledkvkvedlnyst....ttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkv 547 
                  en ll d     + + +k+v ++y+    s+++ l  + l +  G  + +vG  G Gks+l+  l+  + i  +G + +dG  + + s +  rd ++ +  d  lf   +    d   +a+ d+  + l+    +l    k  ++  s       +ls Gqr+ + l  a +++  +l+lde ++  d    +   + +  ++  +G +++ ++h        d++  l +G v
  MMETSP1061-20121228|6394_1 1354 ENALLADGWPWKGGVSFKNVSMKYN---PSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLlTLFRIVEIEPKGAIEIDGIDIRSVSMEKLRDSLAIIPQDPVLFAGTLASnlDATGKATPDDMWKALEAAspDLVRHFKTLGGLESEisegGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEFVEKGVSVITVAHRLDTVIGYDKIAVLGQGHV 1584
                  55666666666688999****9995...699***************************9976156667788999********************************98776422566677777777777654225666666665544431112468******************************999999999999999999999999999997666666677777777766 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0092      0.66     940    1107 ..     626     810 ..     616     873 .. 0.66
   2 !   42.3   0.0   3.5e-14   2.5e-12     925    1160 ..    1364    1605 ..    1354    1621 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0092
   TIGR01257  940 psgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietn.....ldav.......rqslgmcpqhnilfhhltvaehilfyaqlkgrsweeaqle..meamledtglhh..krneeaqdlsgglqrklsvaiafvgd..akvvvldeptsgvdpysrrsiwdlllky 1107
                  p   pa+  +n+ +   ++ a++g  g+gk++ +  + g l p    v+    d +++     +d +       +  +g c q   +  + t+ + i+f  +   + + +a  +  m+  +    l       e+   lsgg + ++++a a+ gd  +kv++ld+  + +d      +++ ++k 
  MMETSP1061-20121228|6394_1  626 PPDSPALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVPKIVVESNIDSDAKestnpVDLMsrpevtlHGNVGYCSQEAWV-PKGTLRDAIVFGRDYDEERYTQAVYDagMDQDIASGTLSSemDVGEKGSSLSGGQRARVALARALYGDqnTKVLILDDCLAALDARVGSIVFERVIKR 810 
                  556678888888888888888888888888888888888888887777655444332211112443311111113345666665543.44566666666666655555555433224444444445441145678889999999999999999998445899999999988887777777766664 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 3.5e-14
   TIGR01257  925 lvpgvcvknlvkifepsgrpavdrlnitfyenqitaflghngagktttlsiltgllp.ptsgtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfyaqlk....grsweeaqlemeamled.tglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllky..rsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglyltlv 1160
                  +  gv  kn+   ++ps    ++ + +++       ++g  g+gk++ l  l  ++     g++ + g di   +++ +r+sl + pq  +lf   t+a  +    +       ++ e a  ++   ++   gl     e   +ls g ++ + +a a++  +k++vlde ts vd  + + + d + k     g ++i  +h +d   +  d+ia++ qg++   g+p  l n    g + +lv
  MMETSP1061-20121228|6394_1 1364 WKGGVSFKNVSMKYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTLFRIVEiEPKGAIEIDGIDIRsVSMEKLRDSLAIIPQDPVLFAG-TLASNLDATGKATpddmWKALEAASPDLVRHFKTlGGLESEISEGGGNLSQGQRQLICLARALIKKSKILVLDEATSSVDAQTDQQVQDTIRKEfvEKGVSVITVAHRLDT-VIGYDKIAVLGQGHVLEYGSPSDLLNIK-NGEFRSLV 1605
                  5679999**9999***99999999999999999999**********9987777766525689*********7359******************75.666666544333211113555666666555444325788888999999****99999**********************************99522578889999999986.4777***********9999998887754.34444555 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00076     0.054     622     656 ..     631     665 ..     620     687 .. 0.89
   2 !    7.1   0.0    0.0038      0.27     485     588 ..     760     870 ..     752     902 .. 0.69
   3 ?    5.6   0.0     0.011       0.8     623     659 ..    1385    1420 ..    1372    1454 .. 0.77
   4 !   14.4   0.1   2.4e-05    0.0017     827     904 ..    1505    1580 ..    1481    1593 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00076
   TIGR00630 622 nlkdidvsiplglltvitGvsgsGkstLindiLvk 656
                  l d+++++  g+++++ G+ gsGks+L++ +L +
  MMETSP1061-20121228|6394_1 631 ALCDVNLKVDSGEVVAVVGPVGSGKSALVKAVLGE 665
                 5789**************************99965 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0038
   TIGR00630 485 aetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLie.tlkrlrdlGntlivvehDeetireaDyvvdiGPgaGeh......GGevvasgsleellkkkesl 588
                  ++lsGG + r++la  +  +    + +lD+    L  r  + + e ++kr +    + i+v  D    r  D+vv +G  + +         +++  g+++ell++ ++l
  MMETSP1061-20121228|6394_1 760 GSSLSGGQRARVALARALYGDQNTKVLILDDCLAALDARVGSIVFErVIKRAKASKAATILVTNDPSLPRRCDRVVLMGSSSTKSsavdsnCSTMIDVGTYDELLARGHAL 870
                 578999999999999998555555555999999999999888877537888898889999999999999999999999987654311111134555666666666655555 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.011
   TIGR00630  623 lkdidvsiplglltvitGvsgsGkstLindiLvkale 659 
                  l+++++s+p g    + G  gsGks+L+  +L++++e
  MMETSP1061-20121228|6394_1 1385 LNEVTLSVPPGSTLGVVGRTGSGKSSLLL-TLFRIVE 1420
                  78899999999999999999999999986.5666665 PP

  == domain 4    score: 14.4 bits;  conditional E-value: 2.4e-05
   TIGR00630  827 ttLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevl.qrlvdkGntvvviehnldviksaDyiidlG 904 
                    Ls G  q + La+ L k+s+   + +lDe t  +  +  +++ + + +++v+kG +v+ + h ld +   D i  lG
  MMETSP1061-20121228|6394_1 1505 GNLSQGQRQLICLARALIKKSK---ILVLDEATSSVDAQTDQQVQDTIrKEFVEKGVSVITVAHRLDTVIGYDKIAVLG 1580
                  579****************986...89**********998889888772579*****************9999998887 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.8e-05    0.0013      79     266 ..     634     822 ..     627     837 .. 0.73
   2 ?    4.2   0.0     0.019       1.4     769     809 ..    1375    1415 ..    1286    1447 .. 0.66
   3 !   14.5   0.2   1.5e-05    0.0011     899     975 ..    1504    1578 ..    1496    1590 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.8e-05
   TIGR00956  79 dvdglikpgelvvvLGrPgsGcstlLksiasktegf.kkgkeskitYdgls...keeikk....hyrgdvvYsaetdvHlpsltvketLdfaarlktpqnRvkgvsreeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlva..kakiqcwDnatrGLDsat.alefvkalktsaeilkatalva 266
                 dv+  + +ge+v v+G+ gsG+s+l+k++ ++++   k+ +es+i  d+ +   + +++      ++g+v Y+++ +  +p+ t  + + f       ++R+   ++ +y + + +    i   + + +  vG+     +sGG+r Rv++a +l +  ++k++++D+    LD+   ++ f +++k       at lv+
  MMETSP1061-20121228|6394_1 634 DVNLKVDSGEVVAVVGPVGSGKSALVKAVLGELTPVpKIVVESNIDSDAKEstnPVDLMSrpevTLHGNVGYCSQ-EAWVPKGTLRDAIVFGRDYD--EERY---TQAVYDAGMDQD---IASGTLSSEMDVGEKG-SSLSGGQRARVALARALYGdqNTKVLILDDCLAALDARVgSIVFERVIKRAKASKAATILVT 822
                 56667889***********************98876367899999988765111456654122246799999987.67899999999999975442..2333...344444443332...3333456788899874.679*************997225788999********97526777788887777666776665 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.019
   TIGR00956  769 vkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvL 809 
                  +k++  +  +L+ev+  v PG+   ++G  G Gk  Ll +L
  MMETSP1061-20121228|6394_1 1375 MKYNPSSPLVLNEVTLSVPPGSTLGVVGRTGSGKSSLLLTL 1415
                  44455555667777777777777777777777777776555 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 1.5e-05
   TIGR00956  899 GeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrk.ladaGqailCtiHqPsailleeFDrLLl 975 
                  G  L+  qR+ + ++  L+ k k +l lDe ts +D+qt   +  ++rk  +++G +++   H    ++   +D++ +
  MMETSP1061-20121228|6394_1 1504 GGNLSQGQRQLICLARALIKKSK-ILVLDEATSSVDAQTDQQVQDTIRKeFVEKGVSVITVAHRLDTVI--GYDKIAV 1578
                  56688888998999999998885.556899999999999999999998746889999888888755544..4455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1623 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       321  (0.0782545); expected 82.0 (0.02)
Passed bias filter:                      203  (0.0494881); expected 82.0 (0.02)
Passed Vit filter:                        79  (0.0192589); expected 4.1 (0.001)
Passed Fwd filter:                        57  (0.0138957); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              57  [number of targets reported over threshold]
# CPU time: 2.68u 0.23s 00:00:02.91 Elapsed: 00:00:01.56
# Mc/sec: 1373.19
//
Query:       MMETSP1061-20121228|6392_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-72  242.2   0.3    2.5e-72  241.6   0.2    1.3  1  TIGR02152 D_ribokin_bact: ribokinase
    1.8e-48  162.2   0.0    2.6e-48  161.7   0.0    1.3  1  TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
    1.2e-14   51.8   0.5    3.2e-13   47.1   0.1    2.3  2  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
    2.4e-14   50.9   1.0      1e-12   45.5   0.2    2.3  2  TIGR03828 pfkB: 1-phosphofructokinase
      1e-13   48.9   0.9    3.3e-11   40.7   0.0    2.3  2  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I
      1e-05   22.8   0.1    2.3e-05   21.7   0.1    1.5  1  TIGR00097 HMP-P_kinase: phosphomethylpyrimidine kinase
  ------ inclusion threshold ------
      0.028   11.6   0.0      0.046   10.9   0.0    1.2  1  TIGR00687 pyridox_kin: pyridoxal kinase


Domain annotation for each model (and alignments):
>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.6   0.2   4.2e-75   2.5e-72       1     296 [.      17     341 ..      17     343 .. 0.86

  Alignments for each domain:
  == domain 1    score: 241.6 bits;  conditional E-value: 4.2e-75
   TIGR02152   1 ivvvGSinvDlvlrvkrlpkpGetvkaeefkiaaGGKGANQAvaaarlg.aevsmigkvGkDefgeellenlkkegidt....eyvkkv.....kktstGvAlilvde.egeNsIvvvaGaneeltpedvkaaeekikesdlvllQlEipletveealkiakkagvkvllnPAPaek.....kldeellslvdiivpNetEaeiLtgie.vedledaekaaekllekgv.kaviitlGskGallvskd.ekklipalkvka...........vDttaAGDtFigalavaLaegksledavrfanaaaalsVtrkGaqssiPtkeev 296
                 i+vvGS+n Dl+++ + lp  Getv +++f +a+GGKGANQAvaaa l  a v+m+++vG+D fg++llen+++ g+d     e+v ++     +k+++GvA ilvde +g+N Ivv  Gan +lt+edv+++ +k k s++ l+QlEi   ++ ealk+ k+ g +++ln APa +     + + +++++vdi++ NetE+  ++g++  e+ +d ek a+ l  kg+ kavi+tlG++Ga++v+k+  +  +++++v+a             t++AGD+F+gala++ ++g sl++a ++a  +a++sV + Gaq+s+P  +e+
  MMETSP1061-20121228|6392_1  17 ILVVGSANQDLTSTSDILPTLGETVMGKNFATACGGKGANQAVAAASLNlAPVAMLCRVGDDLFGRNLLENFRRVGVDYfsekETVISDddgngEKCPSGVASILVDEkSGDNMIVVSPGANYRLTKEDVQNTVTKSKPSQV-LVQLEILPPVALEALKAGKNVGATTILNTAPAPEgwsleDPEMQFFKHVDILILNETELRKVSGTTgSESSADEEKLAKSLITKGIgKAVIVTLGARGAMIVEKSdADGKTETTHVDApedlparelpvKNTVGAGDSFCGALAAYRSTGLSLAEAAKYACGVASMSVRKDGAQTSYPLYDEL 341
                 89***********************************************99**************************853332444333223226799********97268*********************9999888875.67**************************99996522211445789*******************9856778899999*********9**************9987645555555555422222222221579**********************************************99987 PP

>> TIGR00042  TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.7   0.0   4.5e-51   2.6e-48       2     183 ..     363     545 ..     362     546 .. 0.93

  Alignments for each domain:
  == domain 1    score: 161.7 bits;  conditional E-value: 4.5e-51
   TIGR00042   2 ivlaTgNegKlkEvkeiledlgl...eeiaqlkleeieetgktleenallkakavaeilnkpviveDsgLavdaLngaPGlYsaryaktdeknlekilkllegvenrkAefvcviayldkeee.vlvfeGivkGkiaeeergeqgFgyDsiFlvke.edktfaeltkeeKnkiSHRgkAlkklkkll 183
                 i+++TgN++Kl+E+k+il++       e++++k++ +e++g +  e+a  k + +a+ +n+ v+ eD++L+++aLng+PG+Y++++ ++  +  +++ k+l+g+++r A++++++ay++  +e ++vf G ++Gki+   rg++ Fg+D++F + e e+kt+ae+tke Kn iSHRg+ ++k+  +l
  MMETSP1061-20121228|6392_1 363 ITFVTGNKKKLEEAKQILSTSDSsapFELTNKKIDLPELQG-DPIEIAKEKCRLAAKEVNGAVFTEDTSLCFNALNGLPGPYIKWFLED-CGH-AGLNKMLDGFDDRSAYAQTIVAYTTGPGEeIHVFDGRTNGKIVAA-RGPTDFGWDPVFEPDEgEGKTYAEMTKEFKNSISHRGRSFEKFRAFL 545
                 79*****************9988333455666666******.889*******************************************4.776.9**********************9976665*************99.**************999**************************9887 PP

>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.022        13      21      57 ..      37      73 ..      25      95 .. 0.77
   2 !   47.1   0.1   5.5e-16   3.2e-13     183     289 ..     213     333 ..     200     343 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.022
   TIGR03168 21 lgevnrvesvekdagGKGinVarvlkelgaevvalgf 57
                lge+   ++  +  gGKG n a + + l+   va++ 
  MMETSP1061-20121228|6392_1 37 LGETVMGKNFATACGGKGANQAVAAASLNLAPVAMLC 73
                56777778889999************99988777765 PP

  == domain 2    score: 47.1 bits;  conditional E-value: 5.5e-16
   TIGR03168 183 NkeEleelvgrel.kteeevieaarellekGv.envlvSlGadGallvtke......galkaeapkve......vvstvGAGDsmvAgfllalekglsleealrlavAagsaaassegtel 289
                 N+ El ++ g++  ++ ++  ++a+ l++kG+ ++v+v+lGa+Ga++v+k+      ++ +++ap+        v++tvGAGDs+ +++++  + glsl+ea + a  ++s ++ ++g++ 
  MMETSP1061-20121228|6392_1 213 NETELRKVSGTTGsESSADEEKLAKSLITKGIgKAVIVTLGARGAMIVEKSdadgktETTHVDAPEDLparelpVKNTVGAGDSFCGALAAYRSTGLSLAEAAKYACGVASMSVRKDGAQT 333
                 999*******88857778899**********63789************976222111456666664222223449****************************************999776 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.011       6.7      20      57 ..      36      73 ..      23      94 .. 0.77
   2 !   45.5   0.2   1.8e-15     1e-12     183     289 ..     213     333 ..     200     341 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.011
   TIGR03828 20 elgevnrveserldagGKGinVarvLkklgvevvalgf 57
                +lge+   ++  +  gGKG n a + + l+   va++ 
  MMETSP1061-20121228|6392_1 36 TLGETVMGKNFATACGGKGANQAVAAASLNLAPVAMLC 73
                3488899999999**************99998887765 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 1.8e-15
   TIGR03828 183 NkeEleellgrelk.teeevieaarkllekgve.nvlislGadGallvtke......galfaka......pkievkstvGAGDsmvAgfllalekglsleealrlavAvgaaaassegtel 289
                 N+ El ++ g++ + + ++  ++a+ l++kg++ +v+++lGa+Ga++v+k+      ++ +  a       +  vk+tvGAGDs  +++++  + glsl+ea + a  v++ ++ ++g++ 
  MMETSP1061-20121228|6392_1 213 NETELRKVSGTTGSeSSADEEKLAKSLITKGIGkAVIVTLGARGAMIVEKSdadgktETTHVDApedlpaRELPVKNTVGAGDSFCGALAAYRSTGLSLAEAAKYACGVASMSVRKDGAQT 333
                 99********98864788899**********9626999**********98622221133444441232123467******************************************99775 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0012      0.73      10      89 ..      17      94 ..       8     107 .. 0.75
   2 !   40.7   0.0   5.7e-14   3.3e-11     184     304 ..     200     333 ..     183     342 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0012
   TIGR02198 10 vlvvGDlmlDeylvgkverispEapvpvvkvekeeerlGGAaNvakNlasLg.aevvlvgvvGkDeagkaleellkeegie 89
                +lvvG    D   +++++ i p     v+  +  ++  G +aN a   asL+ a v ++  vG+D  g++l e +++ g++
  MMETSP1061-20121228|6392_1 17 ILVVGSANQD---LTSTSDILPTLGETVMGKNFATACGGKGANQAVAAASLNlAPVAMLCRVGDDLFGRNLLENFRRVGVD 94
                5555555555...3455566666666677777777788889**********967899******************999887 PP

  == domain 2    score: 40.7 bits;  conditional E-value: 5.7e-14
   TIGR02198 184 dfskYkgatlltPNrkEleeavg..aveeeeelvkaaeklleeleleallvTrsekGmtllek.....ekevlh......lpaaakevyDVtGAGDtViavlalalaagasleeaaelaNaaagvvvgklGtat 304
                 +++ +k++ +l  N++El+++ g    e++++ +k a++l+++   +a++vT + +G +++ek     ++e++h      lpa+   v    GAGD+  ++la++ ++g+sl+eaa++a   a++ v+k G++t
  MMETSP1061-20121228|6392_1 200 EMQFFKHVDILILNETELRKVSGttGSESSADEEKLAKSLITKGIGKAVIVTLGARGAMIVEKsdadgKTETTHvdapedLPARELPVKNTVGAGDSFCGALAAYRSTGLSLAEAAKYACGVASMSVRKDGAQT 333
                 4568999****************76567778888999***********************998433222344441122226778889********************************************987 PP

>> TIGR00097  HMP-P_kinase: phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.1   3.9e-08   2.3e-05     126     239 ..     205     327 ..     197     332 .. 0.75

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 3.9e-08
   TIGR00097 126 platlvtPNlpEaeallg.vkikteedlkkaakklaelg.akavlikGGhle....dee...avdvlydeeeveilkaerietkntHGtGctlsaaiaaelakglelkeavkeakefvtsaik 239
                 ++++++  N +E  +++g +  ++++d +k ak+l   g  kav+++ G+      +++   ++  + + +  e l a ++  knt G+G+++  a+aa+   gl+l+ea k a    +++++
  MMETSP1061-20121228|6392_1 205 KHVDILILNETELRKVSGtTGSESSADEEKLAKSLITKGiGKAVIVTLGARGamivEKSdadGKTETTHVDAPEDLPARELPVKNTVGAGDSFCGALAAYRSTGLSLAEAAKYACGVASMSVR 327
                 5677888899999999996667888999999999985551578888766533222222211233344455556789************************************99888777776 PP

>> TIGR00687  pyridox_kin: pyridoxal kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.8e-05     0.046     140     245 ..     207     316 ..     201     328 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.8e-05
   TIGR00687 140 aDiitPnlfelelLterk.vetleealaaadaLiakGpkivlvkhLvragksrdr..sieilvvtaegaweiskpllqf.drepvGvGDliaalllakllrgkslkeale 245
                  Di+  n  el+ ++++   e+ ++  + a+ Li kG  + ++  L + g+   +    ++   t++       p  ++  ++ vG GD +++ l a    g sl ea +
  MMETSP1061-20121228|6392_1 207 VDILILNETELRKVSGTTgSESSADEEKLAKSLITKGIGKAVIVTLGARGAMIVEksDADGKTETTHVDAPEDLPARELpVKNTVGAGDSFCGALAAYRSTGLSLAEAAK 316
                 599999******99997636888999999*********9999998988887654412455555555555555556667766889***********998888888888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 2350.26
//
Query:       MMETSP1061-20121228|6399_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-08   29.7   0.0    2.2e-07   28.1   0.0    1.7  1  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   5.3e-11   2.2e-07     153     301 ..       3     150 ..       1     154 [] 0.74

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 5.3e-11
   TIGR01293 153 rwsaveimeaysvarqfnlippiveqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyddk..lpkaskatlkgyqwlkekvrseegrrqqarlkdlaalaeklgctlaqlaiawslrsegv....ssvllgassaeqlmeslgsl 301
                  + a e+  a+  +r+ +l+pp v q  y  + r  ve +l  l +  g   v+++pla +l ++k++d   + k+ ++  +  ++l  +        + a ++ ++   ek   ++ + +  w l + ++    + +llgass +ql e+l + 
  MMETSP1061-20121228|6399_1   3 NYHASEVSRAFQLCREHDLTPPTVYQGLYNPLNRL-VEDELLPLLKENGCSFVAYNPLAAGLLTGKHKDLdtVAKGRFKKNQ--NYLP-RFY---TPANFAAFQLIQDRCEKDQISMVDATFRWLLCHSSLeadsDGILLGASSLDQLDENLAAC 150
                 677899*************************9996.676777788999*****************98764335555544433..3333.222...2344555666666677777778888888877776551111579*************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.18
# Mc/sec: 1129.24
//
Query:       MMETSP1061-20121228|6397_1  [L=1214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.12s 00:00:00.61 Elapsed: 00:00:00.31
# Mc/sec: 5168.86
//
Query:       MMETSP1061-20121228|6400_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 464.83
//
Query:       MMETSP1061-20121228|6402_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 442.16
//
Query:       MMETSP1061-20121228|6405_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.33
# Mc/sec: 731.94
//
Query:       MMETSP1061-20121228|6408_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 701.94
//
Query:       MMETSP1061-20121228|6404_1  [L=1050]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-151  502.2  11.3    4.4e-79  264.1   0.1    2.8  2  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   7.1e-131  435.6  25.0    1.7e-70  235.9   7.1    3.6  2  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   2.4e-120  400.6  19.3    1.4e-76  255.8   8.3    3.4  2  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   2.3e-113  377.8  20.7    1.6e-54  183.0   4.9    4.0  3  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
     2e-107  358.1  22.8    2.2e-65  219.0  10.2    3.2  2  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   4.2e-106  353.9  24.3      2e-58  196.1   1.5    3.3  2  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    3.5e-94  314.1   9.5    2.9e-58  195.3   5.0    2.1  2  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    5.4e-74  247.2  29.8      1e-25   88.0   0.6    7.3  7  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    2.7e-59  198.5   0.1    4.8e-41  138.1   0.0    2.3  2  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    1.1e-56  190.7  30.1    2.8e-25   87.0  11.3    4.4  3  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
      2e-41  140.1  25.9    3.9e-20   69.8   1.5    4.2  3  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    7.9e-39  131.7  28.7    4.6e-17   59.9   1.6    4.2  3  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    1.2e-30  104.1  29.8    1.3e-16   57.7   2.1    3.4  3  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    2.6e-20   69.6  11.4    3.3e-07   26.2   0.0    5.6  5  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    3.1e-06   24.8   0.5    5.8e-06   23.9   0.4    1.4  1  TIGR00338 serB: phosphoserine phosphatase SerB
    7.4e-05   20.3   1.8    0.00025   18.6   0.8    2.1  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
  ------ inclusion threshold ------
      0.015   13.1   0.4       0.61    7.9   0.0    2.4  2  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
      0.026   11.7   0.0      0.047   10.9   0.0    1.4  1  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase


Domain annotation for each model (and alignments):
>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.8   4.2   8.1e-74   1.8e-71       6     345 ..      16     379 ..      13     409 .. 0.83
   2 !  264.1   0.1   1.9e-81   4.4e-79     357     850 ..     456    1005 ..     444    1009 .. 0.77

  Alignments for each domain:
  == domain 1    score: 238.8 bits;  conditional E-value: 8.1e-74
   TIGR01522   6 elsveetlskletdl...enGlsssqevsrrrklhGsnelkveeeesllkkflsqfvkdplillllasavvsvllg.........nidda..vsitlailivvt.vgfvqeyrsekslealnklvpaechliraGkeehvlasklvpGdlvelsvGdrvpadlriveavdlsidesnltGettpvkksseaie..........alaersniaymGtlvreGkgkGivvgtGsntefGavfemmqeiekpktplqksmdklGkdlslvsfiv.igvi.vlvGl.lqGkdwlemftisvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtkiytvdk 345
                 +ls ee+ ++l   +   ++Gl+   e++ r + +G+n+l+ +e+e+ll+k  +q  ++ l+l+l+  av+s++           ++ +   ++i l ++i+ t +g++qe  +e++ eal+ ++ +++ ++r G+e +v as++vpGd+v+l +Gd++padlr++e  +l   e++ltGe+ p++k+ + ie           l +r+n+ y Gtl+ +G g G+vv+tG+ te G++ ++++++ek kt + + +d++   l    fi+ +++i  l  + +qG   l  ++ s+  ava ipeGl  ivtvt a  v +m+  +aivr lp+vetlGsv vicsdktGtlt+n m++t   t++ 
  MMETSP1061-20121228|6404_1  16 TLSAEEAFAELSVPKdirSKGLT-PAEATARLEKYGENKLTEKEKETLLQKIWNQV-NNVLVLILVIVAVISLISAfvipndvnpRYTNWiqIAIILGVIIINTiIGLIQEGSAEEAAEALKGMLSSDAVVVRDGEEIEVPASTIVPGDIVMLALGDKIPADLRVIEVQNLASAEAALTGESVPIEKTPSIIElkegqlpkqvPLGDRKNMLYSGTLIAQGSGVGLVVATGDFTEIGTINKLVNSQEKQKTAVLEQIDTISLWL--AGFIMlVALItFLYEWrVQGTTPLMAVNTSLVCAVAMIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTNA 379
                 68888888888765411257998.89*************************99998.99**********9998643111111111223332255566666665527*********************************************************************************9876542222222222589****************************************************986554..444431333313444447999999999999999**************************************************************9888764 PP

  == domain 2    score: 264.1 bits;  conditional E-value: 1.9e-81
   TIGR01522  357 ekilkvgalcnnakvkneaa..sllgkptdvaliellek..fgledlretvkrvaevpfsserkymavkvlt.........dskkivfvkGateqvleyctsylk..kdGkteklteeqkekiqeeaaemaseGlrvlalasktekd....................lvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavks...skeGekldelddqqlsevvdkvavfaraspehklkivkalqkrGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnniknfitfqlstsvaa.lslv.......alatvlklenplnamqilwinilmdGppaqslGvepvdkdvlkkpprkrkdkiltkdllkkvlvsaviivvgtll.vfvke......lq....dgvvtardttmtftcfvffdmfnalacrsetksvfe.iGlfsnkmflyavgasllGqllvvyvpflqk.vfqtealsikdllllllisssvlivdeirklfe 850 
                  +++l  g lc ++k+ ++ +    +g+pt+ +++  +    ++++  ++    +aevpfsse k+ma+             ++k iv+vkGa +++++ c++ +   k G+te++++   e  qe+ a ++s+Glrvlal ++t+ +                    l+  Gl  ++dpprp+   a+e+   + vrv mitGd ++ta++i+ +lGl   +   + +G +ld++ d++l ++v + +vfaraspe+k+kivkalq++G+v +mtGdGvndapalk+a++GvamG +Gtdva+eaa+mil+dd+fatilsa++eG+ +++n++  +  +     a  ls++       +  t  + +  l a+q+l+ n++          vep ++ ++  ppr+  ++++ + l+ ++ + +v++v +t+   f+ e      +       +  +r  + +   + f   f +l++r +  s ++   + +n   +y+v+   + ql++ y+p l+k +f    +   +  + ll    v+i  e++k ++
  MMETSP1061-20121228|6404_1  456 RQALIGGVLCSKCKLGKDGGreGEIGNPTELSILRATYWsgVDVNAAKDASPIIAEVPFSSEYKFMATVHESspendgpgmEDKLIVHVKGAPDRMVKLCDTQAVagKLGETEPINA---EFWQEQIAILSSHGLRVLALLRGTTAKgsvtkgdalkpefingrdpwLTIVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGLVDAQhpaAITGPELDSMADDELCKAVMTYNVFARASPENKIKIVKALQSQGEVASMTGDGVNDAPALKAANMGVAMGMEGTDVAREAAEMILADDNFATILSAVKEGRVVWDNLRKVLMINTPINNAQgLSVLfgiicgfSRGTEQNDKVILTAIQVLYCNLICAVTLGFVAAVEPAEDGIMDVPPRRVGKRLIGRFLFLRIALGTVVLVFVTVAaSFWAEdilvnqFGldreSKECINRVHSQASNTLTFGACFVTLSARFSYSSSMHpRVFQTNVFVVYSVLIVAVLQLAITYIPGLNKfIFAMAPMKAFQWGICLLGGVIVFIALEAEKALR 1005
                  567778999****999986411579********99876511667788999999**************97654111111111456799*************98654114455555555...567899999**********8654432111111223333333344455899***********************************************97544111568**********************************************************************************************************9988766554431443211111112233334445699************9999999*************************************999986334433221111322111234455666666777888888999999977665555055567777789****************99874677666666666666666666666666666665 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.9   7.1   7.4e-73   1.7e-70       2     304 ..      67     394 ..      66     441 .. 0.87
   2 !  201.2   4.7   2.3e-62   5.2e-60     319     789 ..     464     996 ..     456    1006 .. 0.67

  Alignments for each domain:
  == domain 1    score: 235.9 bits;  conditional E-value: 7.4e-73
   TIGR01116   2 leqfedllvrilllaavvs....fvl.......vaalvePlvillilvlnaivGvwqernaekaiealkeleseealvlrdark....akdlvpGdivelavGdkvpadvrllelkslkvdqsiltGesvsvekktesvkkekaavq......dkknmlfsGtlvvaGkalgvvvrtGvnteiGkirkevkeaeeektPlkkkldefGeklskvialicilvwvinikkflaiyyfki..avalavaaiPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkmsvaklvalekefk..vegttyepve 304
                  +q ++ lv il++ av+s    fv+        +++++  +il ++++n+i+G++qe  ae+a ealk + s++a+v+rd+++    a  +vpGdiv la Gdk+pad+r+ e++ l++ ++ ltGesv++ek+   ++ ++ +++      d+knml+sGtl+++G  +g+vv+tG  teiG+i+k v+++e++kt + +++d     l+++i l+ ++ ++ + +   ++  + +  ++  ava iPeGl a++t   a    kma  na+vr lP vetlG +tvicsdktGtlttn ms++ +v+ ++++k  v+ +t +p++
  MMETSP1061-20121228|6404_1  67 WNQVNNVLVLILVIVAVISlisaFVIpndvnprYTNWIQIAIILGVIIINTIIGLIQEGSAEEAAEALKGMLSSDAVVVRDGEEievpASTIVPGDIVMLALGDKIPADLRVIEVQNLASAEAALTGESVPIEKTPSIIELKEGQLPkqvplgDRKNMLYSGTLIAQGSGVGLVVATGDFTEIGTINKLVNSQEKQKTAVLEQIDTISLWLAGFIMLVALITFLYEWRVQGTTPLMAVntSLVCAVAMIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTNAHYKnnVHASTRTPEN 394
                 6899*************983333555333333335788899****************************************9863333789********************************************99998766554322223389*********************************************************************987776666555551156669*******************************************************************9996447788777754 PP

  == domain 2    score: 201.2 bits;  conditional E-value: 2.3e-62
   TIGR01116 319 lcndsklavdkkkvekvGeateaalkvlveklglsaaknkkslksrealacnslikkkatlefsrdrksmsvlvksnklfvkGapeellersthillkgsavPltekakqkilaslkelssealrclal..............avk......eesklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGils.....sftGkefeeleekkal.......vfsrvePshklklve.lkeldqivamtGdGvndaPalkkadiGiamG.sGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifltaalgi....ea.....lipvqllWvnlvtdGlPatalgfnppdkdilkkpprkedeplitgwlflrylviGvyv.Glatvaaliwykqka..stlsl................svlvviemlnalnalsedssllkippw.enkwlvaaiasslalhllilyvpllsa.lfgvvplslteWllvlkvslPvil 789
                 lc+ +kl  d  +  ++G++te ++   +   g+     k+ + +      +s +k  at++ s        +  +  ++vkGap+ +++ +    + g+    ++   +    ++  lss++lr+lal              a+k      ++  l+++G+ ++ dPPr+e+  aie+ ++a +rv +itGd+k+ta ai   +G+++     + tG e++++ + +         vf+r+ P++k k+v+ l++++++++mtGdGvndaPalk a++G+amG  Gt+va+ea++++laddnfati++av+eGr++++n+++ +      n  +  s++   + g+    e+     l+++q+l+ nl+         +++p++  i+  ppr+  + li  +lflr   +G+ v  ++tvaa  w  + +  + + l                  l     + +l a    ss ++ +++ +n ++v ++     l l i y+p l++ +f ++p++  +W + l   + v +
  MMETSP1061-20121228|6404_1 464 LCSKCKLGKDGGREGEIGNPTELSILRATYWSGVDVNAAKDASPIIAEVPFSSEYKFMATVHESSPENDGPGMEDKLIVHVKGAPDRMVKLCDTQAVAGKLGETEPINAEFWQEQIAILSSHGLRVLALlrgttakgsvtkgdALKpefingRDPWLTIVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGLVDaqhpaAITGPELDSMADDELCkavmtynVFARASPENKIKIVKaLQSQGEVASMTGDGVNDAPALKAANMGVAMGmEGTDVAREAAEMILADDNFATILSAVKEGRVVWDNLRKVLMINTPINNAQGLSVLFGIICGFsrgtEQndkviLTAIQVLYCNLICAVTLGFVAAVEPAEDGIMDVPPRRVGKRLIGRFLFLRIA-LGTVVlVFVTVAASFWA-EDIlvNQFGLdreskecinrvhsqasNTLTFGACFVTLSARFSYSSSMHPRVFqTNVFVVYSVLIVAVLQLAITYIPGLNKfIFAMAPMKAFQWGICLLGGVIVFI 996
                 56666666666666666666665544444333333333333333333334445555555555555555555555666778999999999999887777766555555555555566667777888887644433333222222223111111345699*************************************************962333368********98754222233448*************85699****************************55***********************************9986444444444445555555544411113233344789********99988888889****************************65.55555144555555443.33201222221110000000000000233333344445554444444555555369999999999999********977543999****99999988766555555 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.5   0.5   1.3e-45   2.9e-43       5     233 ..      12     259 ..       8     269 .. 0.86
   2 !  255.8   8.3   6.1e-79   1.4e-76     307     992 ..     307    1008 ..     261    1012 .. 0.78

  Alignments for each domain:
  == domain 1    score: 145.5 bits;  conditional E-value: 1.3e-45
   TIGR01523   5 nvyfsdikeveaeflg..tsl.tegltqeeavnrlkevgenrleddskvdakkvllrqvlnamivvlllaailsf....at........tdwieggvisavivlnvlvglvqeykaektmdslktlaspnahvirsskseaidskdlvpgdvvllkvgdvvpadlrlvetknfetdealltgeslpvikdanlvfqke....eevsvgdrlnlaysssivvkgrakgiviktalqseigkiakslrqd 233
                 ++++++ +e++   l+    + ++glt  ea  rl+++gen+l +  k    + + +qv n ++++l++ a++s+     +        t+wi+  +i  vi++n ++gl+qe  ae + ++lk + s  a v+r++    + +  +vpgd+v+l  gd +padlr++e +n+ + ea ltges+p+ k   ++  ke    ++v++gdr n+ ys +++++g   g+v++t+  +eig+i k ++++
  MMETSP1061-20121228|6404_1  12 PAWHTLSAEEAFAELSvpKDIrSKGLTPAEATARLEKYGENKLTEKEKETLLQKIWNQVNNVLVLILVIVAVISLisafVIpndvnpryTNWIQIAIILGVIIINTIIGLIQEGSAEEAAEALKGMLSSDAVVVRDGEEIEVPASTIVPGDIVMLALGDKIPADLRVIEVQNLASAEAALTGESVPIEKTPSIIELKEgqlpKQVPLGDRKNMLYSGTLIAQGSGVGLVVATGDFTEIGTINKLVNSQ 259
                 778888887764433201233258******************************************9999998852222223333333389**************************************************************************************************9998865552222689************************************9977654 PP

  == domain 2    score: 255.8 bits;  conditional E-value: 6.1e-79
   TIGR01523  307 aislalsiipeslvvvlsitmavgakvmvkrrvivrklealealgavtdicsdktgtltqgkm.larrvwiprygtlsvdts.........ddafnptigtvsll....edadvdv.lkekkd..elkekdlpedi........dsdlfikllktaalanlatvfkddetdewkvkgepteialqvfakkldlgkkdllksnefvaeypfdsevkrmavvyedq...qn....etytvyakgaverilercsssygs.tleep...dveliikqveslaaeglrvlal.....askvidkddvnitlnrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptnlisdrdeivdsmvmtgsqfdalseeevddlkvlplviarcapqtkvkmiealhrrkkfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfvlqllvenvaevlllvvglv..f.rdevgksvfplspvevlwiivvtssfpamglglekaapdlmerlphdskvgiftkelivdtlvygiiltvvslasfvvilyginsgrlsydcdatynascrdvykarsavfavvtfcililavevkdldrslfrlhpdtesnvkeflrslvenkflawaiilaavsvfpvvyipvinddvfkhkyig.aewglvivaviayfiyvelyksikrrl 992 
                  ++  a+++ipe l +++++t a    +m+  + ivr l a+e+lg+vt icsdktgtlt   m ++  v    +    v++s         ddaf  ++ ++s +    e+ + +v l+e        ++d  +          d   + + l    l+  + + kd   +     g+pte+++   +    +  +  + +   +ae pf se k ma+v+e     ++    +   v+ kga +r+++ c +   +  l e+   + e  ++q+  l++ glrvlal     a  +++k d+ +    +  +  l +++l  i dppr e+  a++  h+a +rv m+tgd+ +ta ai   +g++ +     +    +   +tg ++d+++++e+ +  +   v ar +p+ k+k+++al  + +  +mtgdgvnd+p+lk an+g+amg++g+dva+ea++++l+ddnfa+il av+egr + dn++k ++     n a+ l ++ g++  f r   +     l+ ++vl+++++ +    +   +e a+  +m+ +p   +vg   k li   l   i l++v l+ fv++   + +  +  +  +  + s + + +  s +  ++tf +  +++  + +  s   +hp            +  n f+++++++ av  + + yip +n+ +f   ++  ++wg+++   ++ fi  e  k+ +r+l
  MMETSP1061-20121228|6404_1  307 SLVCAVAMIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMsMTAFVTTNAHYKNNVHAStrtpenlirDDAFFGEKADISKViarnEAKKSGVeLEETEAtaSTVKIDSSDVTpvgqggspDKAFWRQALIGGVLCSKCKLGKDG--GREGEIGNPTELSILRATYWSGVDVNAAKDASPIIAEVPFSSEYKFMATVHESSpenDGpgmeDKLIVHVKGAPDRMVKLCDTQAVAgKLGETepiNAEFWQEQIAILSSHGLRVLALlrgttAKGSVTKGDALKPEFINGRDPWLTIVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGLVDA-----Q----HPAAITGPELDSMADDELCKAVMTYNVFARASPENKIKIVKALQSQGEVASMTGDGVNDAPALKAANMGVAMGMEGTDVAREAAEMILADDNFATILSAVKEGRVVWDNLRKVLMINTPINNAQGLSVLFGIIcgFsRGTEQNDKVILTAIQVLYCNLICAVTLGFVAAVEPAEDGIMDVPPR--RVG---KRLIGRFLFLRIALGTVVLV-FVTVAASFWAEDILVNQFGLDRESKECINRVHSQASNTLTFGACFVTLSAR-FSYS-SSMHPR----------VFQTNVFVVYSVLIVAVLQLAITYIPGLNKFIFAMAPMKaFQWGICLLGGVIVFIALEAEKALRRHL 1008
                  245689*****************************************************9988445555555544444444333444445589999999888876444456667774444333113345553332211112221333456677788888888887554..445567*******98777777777788889999******************96421122222246789*************9975431454431127899****************98554445567888888888888888999***************************************************998.....2....23568***************99999***************************************************************************************988888788888777766665222366666667789***********999999999**************7..566...67777777777777776665.555556666666666666666667777888899999999*99988887654.3333.368984..........345699*****************************9986269*********************9987 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.0   4.9   7.2e-57   1.6e-54      33     369 ..      33     378 ..      13     416 .. 0.85
   2 !   71.4   0.0   3.7e-23   8.3e-21     422     609 ..     480     672 ..     475     677 .. 0.92
   3 !  121.4   4.8   2.9e-38   6.5e-36     637     984 ..     677    1006 ..     671    1020 .. 0.72

  Alignments for each domain:
  == domain 1    score: 183.0 bits;  conditional E-value: 7.2e-57
   TIGR01106  33 lskglsearaaellardgpnaltppkttpeyvkfarqlfgglslllwigailcfl.aygiqaaeeeepse.dnlylgvvlsavvivtgvfsyyqeaksskilesfknlvpqqalvirdgeklsinaeevvvgdlvevkggdripadlriisakglkvdnssltgesepqtrspeft........henpletr.niaffstncvegtargivvstgdrtvlgriaslasglesgktpiaieiehfidiitgvavflgvsffilslil.eytfleavifligiivanvpegllatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmtvahlwfdn 369
                  skgl+ a a+  l++ g n lt  ++     k+ +q+   l l+l i a++ ++ a+ i   ++ +p+  + + ++++l  v+i+  +++  qe  + +  e++k ++  +a+v+rdge +++ a  +v gd+v +  gd+ipadlr+i+ ++l   +++ltges p  ++p +         ++ pl  r n+ +  t + +g   g+vv+tgd t +g i  l    e++kt +  +i+ +   ++g  +++ +  f+    + + t l av   +   va +pegl a vtv+ + +  ++a  n +v+ l avetlgs +vicsdktgtlt n m+++ +   n
  MMETSP1061-20121228|6404_1  33 RSKGLTPAEATARLEKYGENKLTEKEKETLLQKIWNQVNNVLVLILVIVAVISLIsAFVIP--NDVNPRYtNWIQIAIILG-VIIINTIIGLIQEGSAEEAAEALKGMLSSDAVVVRDGEEIEVPASTIVPGDIVMLALGDKIPADLRVIEVQNLASAEAALTGESVPIEKTPSIIelkegqlpKQVPLGDRkNMLYSGTLIAQGSGVGLVVATGDFTEIGTINKLVNSQEKQKTAVLEQIDTISLWLAGFIMLVALITFLYEWRVqGTTPLMAVNTSLVCAVAMIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTN 378
                 479************************99***********************999345554..444555405567777776.6788889*******************************************************************************999886542211111157799765166666678889***************************************9999***999999777777665516788********************************************************************9987654444 PP

  == domain 2    score: 71.4 bits;  conditional E-value: 3.7e-23
   TIGR01106 422 agdasesallkfielalgsvkelrerykkvveipfnstnkyqlsihekedas.....epryllvmkgaperilercssilikgkeqpldeelkeafqnaylelgglgervlgfchlylpeeqypegfkfdvddvnfpvenlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiis 609
                 +g+ +e ++l+ +  +  +v+  ++  + ++e+pf s  k+  ++he++  +     e++ ++ +kgap+r+++ c++  + gk    +   +e +q+    l   g rvl + + + ++ +  +g +++ + +n     l++vgl +++dppr     a+     a ++v m+tgdh  ta ai +s+g++ 
  MMETSP1061-20121228|6404_1 480 IGNPTELSILRATYWSGVDVNAAKDASPIIAEVPFSSEYKFMATVHESSPENdgpgmEDKLIVHVKGAPDRMVKLCDTQAVAGKLGETEPINAEFWQEQIAILSSHGLRVLALLRGTTAKGSVTKGDALKPEFINGRDPWLTIVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGLVD 672
                 688899999999999999****************************9754431112256777889*******************99999999999***********************************************************************************************986 PP

  == domain 3    score: 121.4 bits;  conditional E-value: 2.9e-38
   TIGR01106  637 cvvhgsdlkdltseqldeilkehteivfartspqqkliivegcqrqgaivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnipeitpflifiivnip........lplgtvtilcidlgtdlvpaislayekaesdimkrkprnpkkdklvnerlis.laygqigliqalagfltyfvilaengflpskllglrvewddkavndledsygqewtyeqrkiveftchtaffvsivvvqiadliirktrrnsvfqqglknkililglveevalaaflsycpgmev.alrllplkltwwlvalpysllifvydevrkliir 984 
                  + ++g +l  + +++l +++ +++  vfar+sp++k+ iv++ q qg + ++tgdgvnd+palk a++gvamg+ g+dv+++aa+mil ddnfa+i++ v+egr+++dnl+k +      n ++    l  ii++          + l ++ +l+ +l   +      a e ae  im+  pr         +rli  + +++i    al++ +  fv +a   +    l++ +   d ++ + ++  + q            +++t  f +  v+  a +  + +    vfq   +n +++++++   +l   ++y pg+++ ++ + p+k+  w ++l  ++++f+  e  k + r
  MMETSP1061-20121228|6404_1  677 AAITGPELDSMADDELCKAVMTYN--VFARASPENKIKIVKALQSQGEVASMTGDGVNDAPALKAANMGVAMGMEGTDVAREAAEMILADDNFATILSAVKEGRVVWDNLRKVLMINTPINNAQGLSVLFGIICGFSrgteqndkVILTAIQVLYCNLICAVTLGFVAAVEPAEDGIMDVPPRRV------GKRLIGrFLFLRI----ALGTVVLVFVTVAASFWAEDILVN-QFGLDRESKECINRVHSQ------------ASNTLTFGACFVTLSARFSYSSSMHPRVFQ---TNVFVVYSVLIVAVLQLAITYIPGLNKfIFAMAPMKAFQWGICLLGGVIVFIALEAEKALRR 1006
                  6799**************999886..9*************************************************************************************9987766666666667777777654222222226678888888888888888888899************974......4444431223343....667777777777766554444443.333333333333222222............233333333334445556666666677777...46677777777777777788888876535778888877777777777888877777766554 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.0  10.2   9.7e-68   2.2e-65       1     352 [.      36     414 ..      36     444 .. 0.85
   2 !  141.4   0.7   2.9e-44   6.7e-42     378     601 ..     538     789 ..     497     897 .. 0.88

  Alignments for each domain:
  == domain 1    score: 219.0 bits;  conditional E-value: 9.7e-68
   TIGR01647   1 GLsseeakkrlkkyGpneleekkeskllk.FlsflwnPlswvleiAaiiaialen............weDfviilallllnatigfieeskAgnaveaLkkslapkakvlRdgkwqeleakelvpGDvvalklGdivpaDvklvegdklkvDqaaltGEslpvekk................lg...diaysgsvvkkGEveavvvatGvntffGkaakLveeaekesghlqkilskigavlivlilvlvliellvellkrkeslreslqfalvllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideelivkeeldkedvlllaalasreedkdaidtavlkkladlkealek 352
                 GL+ +ea+ rl+kyG+n+l+ek++++ll+   +++ n l ++l i a+i+ + +             w  ++iil+++++n+ ig i+e +A++a eaLk  l + a v+Rdg+ +e++a+++vpGD+v+l+lGd +paD++++e ++l   +aaltGEs+p+ek                 lg   ++ ysg  +++G   ++vvatG  t +G   kLv+++ek+ + + + + +i  +l  +i+++ li++l+e+  ++++    ++ +lv  va iP +l+++++vt A   +k+a  +aiv+ l a+E l +v+++CsDktGtlt+n +s++  ++++ +++ ++v  +a  ++r++++   d a++++ ad+++ +++
  MMETSP1061-20121228|6404_1  36 GLTPAEATARLEKYGENKLTEKEKETLLQkIWNQVNNVLVLILVIVAVISLISAFvipndvnprytnWIQIAIILGVIIINTIIGLIQEGSAEEAAEALKGMLSSDAVVVRDGEEIEVPASTIVPGDIVMLALGDKIPADLRVIEVQNLASAEAALTGESVPIEKTpsiielkegqlpkqvpLGdrkNMLYSGTLIAQGSGVGLVVATGDFTEIGTINKLVNSQEKQKTAVLEQIDTISLWLAGFIMLVALITFLYEWRVQGTTPLMAVNTSLVCAVAMIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTNAHYK-NNV--HA--STRTPENLIRDDAFFGEKADISKVIAR 414
                 9********************9998876514556666777777777777654433566799******************************************************************************************************995333333222222222212222589*************************************999999999***************************************************************************************************999888888555.443..22..336666666677777777777755544 PP

  == domain 2    score: 141.4 bits;  conditional E-value: 2.9e-44
   TIGR01647 378 gkkfkvtkGapqvildlvkekkeieee..........veekveelAerGlRaLgvava..................dekgew.ellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglgtniltaekllkkkkedklkseeleelvekadGFAevfPeHkyeivealqkrghlvgmtGDGvnDaPaLkkAdvGiAv.agAtDAArsaaDivltepGlsviveAikesRkiFqRmksyvi 601
                 +k +  +kGap+ +++l++++    +            +e+++ l ++GlR L++ +                   ++++ w +++gl +++DPPr++   +ie+a++  v+v m+tGDh   a  ++  lgl +   +a    +  + d+++++el++ v + + FA   Pe k +iv+alq++g + +mtGDGvnDaPaLk A++G+A+  + tD Ar aa+++l +  +++i++A+ke R +++ +++ ++
  MMETSP1061-20121228|6404_1 538 DKLIVHVKGAPDRMVKLCDTQAVAGKLgetepinaefWQEQIAILSSHGLRVLALLRGttakgsvtkgdalkpefiNGRDPWlTIVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGLVDAQHPAAI--TGPELDSMADDELCKAVMTYNVFARASPENKIKIVKALQSQGEVASMTGDGVNDAPALKAANMGVAMgMEGTDVAREAAEMILADDNFATILSAVKEGRVVWDNLRKVLM 789
                 5667779***********998766655778999999999***************98777899**************9999995699***********************************************998766654..45666689999*******************************************************94589******************************998876554 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.7  10.1   8.7e-50     2e-47      53     393 ..      34     386 ..      20     409 .. 0.82
   2 !  196.1   1.5   8.8e-61     2e-58     390     871 ..     457     996 ..     441    1003 .. 0.75

  Alignments for each domain:
  == domain 1    score: 159.7 bits;  conditional E-value: 8.7e-50
   TIGR01517  53 neGvssselerRekvygknelpekkeksflqlvwealsDktlilLsvaavvsl....vvgeekeeketgwieGvailvsvllv.vlvtavnDykkelqfreLnekkeekkikviRggqeiqisiadvvvGDivslstGdvvpaDgvlisGlklkiDessltGesdpikkg....................kekLlsGtkvlegsgrmlvtavGvnsvtGklltelreageeeplqlkLselasligkfGlgsavllllvlvlryviekivedteekaktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvkgyigeeavrnilv 393
                  +G++++e + R ++yg+n+l+ek+++++lq +w+ ++++++++L++ av+sl    v++++ +   t+wi+ +ai++ v+++ +++  +++ + e     L+   ++    v+R+g+ei+++   +v GDiv l  Gd +paD  +i+ ++l   e++ltGes pi+k+                    k+ L sGt + +gsg +lv+a G  ++ G + + +++++++       + + ++i  + l  a +++lv+++ ++ e  v++t+      l  + +++   v  +PegL   vt++ a++v k+   n++vR L a et+Gs t iCsDktGtLt+nvms+   + ++++ +n + 
  MMETSP1061-20121228|6404_1  34 SKGLTPAEATARLEKYGENKLTEKEKETLLQKIWNQVNNVLVLILVIVAVISLisafVIPNDVNPRYTNWIQ-IAIILGVIIInTIIGLIQEGSAEEAAEALKGMLSSD-AVVVRDGEEIEVPASTIVPGDIVMLALGDKIPADLRVIEVQNLASAEAALTGESVPIEKTpsiielkegqlpkqvplgdrKNMLYSGTLIAQGSGVGLVVATGDFTEIGTINKLVNSQEKQ------KTAVLEQIDTISLWLAGFIMLVALITFLYEWRVQGTTP-----LMAVNTSLVCAVAMIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTNAHYKNNVH 386
                 58*************************************************96444478999999******8.667777666615667788888888888888766655.5699**************************************************9998852233222222222222222234689************************998888743332......24566778888888998999999999998877766543.....333445555667789*******************************************************9998888888887654 PP

  == domain 2    score: 196.1 bits;  conditional E-value: 8.8e-61
   TIGR01517 390 nilveaivlnssaeeekdkgkeefiGsktetalLelvklllkdvkekrkeekvvkiypfeserkkmsvvvkhs.........eglRlfikGaseivlkkcekkl..dsngeakeisekkdevedeienlasealRtislay....kdelpekds........pnkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltage.lalegkefrkd......kilpklrvlaRssPlDkqlLve.lkklgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvn.......vvavilafv.galisstspLtavqlLWvnlimDtLaaLaLateePteelldRkPigrkaplisrsmwkni.lgqaayqlvvl........filefaG.....eelftivf....ntfvllqlfnelnaRkleelnvfeglfknaifvai.vlitlavqviivefgGa...alsvvslsieqWllcvllgalsli 871
                 + l+ ++ l s+ +  kd+g+e  iG++te ++L  +  ++ dv+     + +++ +pf+se k+m++v + s         + l + +kGa + ++k c ++   ++ ge+++i++  +  +++i  l+s++lR ++l+     k ++ + d          +  l+++++  i dP r++   a+++ ++a + v m+tGD  +ta ai  + g+  a++  a+ g+e  ++      k +   +v+aR+sP++k  +v+ l+++gev ++tGDG nDaPaLk a++G+amg+ Gt+va+ea+++il dDnfa+i  av+ GR v d+++k l +   +n       +  +i  f  g+   ++  Lta+q+L+ nli         a e+ +++++d +P+   + li r ++  i lg  ++  v +        ++++ +G     +e +  v     nt  +   f  l aR  ++  +   +f+  +fv   vli+ ++q+ i  + G     + +++++  qW +c+l g++ +i
  MMETSP1061-20121228|6404_1 457 QALIGGV-LCSKCKLGKDGGREGEIGNPTELSILRATYWSGVDVNAAKDASPIIAEVPFSSEYKFMATVHESSpendgpgmeDKLIVHVKGAPDRMVKLCDTQAvaGKLGETEPINA--EFWQEQIAILSSHGLRVLALLRgttaKGSVTKGDAlkpefingRDPWLTIVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGLVDAQHpAAITGPELDSMaddelcKAVMTYNVFARASPENKIKIVKaLQSQGEVASMTGDGVNDAPALKAANMGVAMGMEGTDVAREAAEMILADDNFATILSAVKEGRVVWDNLRKVLMINTPINnaqglsvLFGIICGFSrGTEQNDKVILTAIQVLYCNLICAVTLGFVAAVEPAEDGIMDVPPRRVGKRLIGRFLFLRIaLGTVVLVFVTVaasfwaedILVNQFGldresKECINRVHsqasNTLTFGACFVTLSARFSYSSSMHPRVFQTNVFVVYsVLIVAVLQLAITYIPGLnkfIFAMAPMKAFQWGICLLGGVIVFI 996
                 5555554.456678899****************************************************97542222222224567899***********87651145566666654..6789**************9975111122333333211111111234589999999******************************************9887652678898887641211112344568**********99986599************************************************************************9988733322212234555543555677889************9754455569***********************998777355555444333122222212333333222224444444344449999************************99998762555566787777777742224788999999**999999888665 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.3   5.0   1.3e-60   2.9e-58      28     362 ..      31     379 ..      15     389 .. 0.93
   2 !  118.8   0.0   1.7e-37   3.9e-35     409     683 ..     509     803 ..     491     810 .. 0.86

  Alignments for each domain:
  == domain 1    score: 195.3 bits;  conditional E-value: 1.3e-60
   TIGR01524  28 dsheeGltaaevterlkkyGenevaeekkspalvqllrafnnpfiyvlailagvsylt............edleavviialmvslsgllrfvqearaeraadalkkmvkntatvlrvinenieaaleevpidelvpGdviklaaGdlipadvrviaardlliaqsaltGeslpvekvaatkea......kdkellelenlllmGtnvvsGraqavvlatGsstffGslakavse.dreqtafdkGvksvskllirfmlvmvpvvllinGlskGdw.leaalfalavavGltpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivlekhldvsG 362
                 d   +Glt ae+t rl+kyGen+++e++k + l ++++  nn ++++l+i+a++s ++            ++   + ii+ ++ + ++++++qe  ae aa+alk m+++ a v+r      ++   evp   +vpGd++ la Gd ipad+rvi+ ++l  a++altGes+p+ek     e       k+  l +++n+l+ Gt +  G +  +v+atG  t  G++ k v   ++++ta    ++++s  l  f+++++ + +l +  ++G   l a+  +l  av + pe l  iv+ + a    k++    iv+ l a++ +G++ ++c+dktGtlt + + +  ++ +  
  MMETSP1061-20121228|6404_1  31 DIRSKGLTPAEATARLEKYGENKLTEKEKETLLQKIWNQVNNVLVLILVIVAVISLISafvipndvnpryTNWIQIAIILGVIIINTIIGLIQEGSAEEAAEALKGMLSSDAVVVR------DGEEIEVPASTIVPGDIVMLALGDKIPADLRVIEVQNLASAEAALTGESVPIEKTPSIIELkegqlpKQVPLGDRKNMLYSGTLIAQGSGVGLVVATGDFTEIGTINKLVNSqEKQKTAVLEQIDTISLWLAGFIMLVALITFLYEWRVQGTTpLMAVNTSLVCAVAMIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTNA 379
                 66789****************************************************9**********99999999****************************************......666789************************************************8777666555666888889***********************************9987588899****************************999997538899999***********************************************************9999988876655 PP

  == domain 2    score: 118.8 bits;  conditional E-value: 1.7e-37
   TIGR01524 409 vdeipfdferrrlsvvveeaae......vrrli..ckGaveelltvathlreggavvalsesekeelkavteelnrqGlrvvav...atkklkasead.....lskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGi.dan..dvllGadieelsdeelaaevekravfarltplqkerivtllkkeGhtvGflGdGindapalrkadvGisvd.saadiakeasdiillekslmvleegvieGretfgnilkylkmtassnfgnvfsvl 683
                 + e+pf  e + ++ v e + e      + +li  +kGa + +++++  +  +g++   +  + e  +++ + l  +Glrv+a+   +t k++++++d     + +  +  l+i G+ a  dpp+  +  ai++ +++ + v ++tGd +  +  i   +G+ da+    ++G ++++++d+el++ v  ++vfar +p +k +iv++l+ +G +  + GdG+ndapal++a++G+++    +d+a+ea+++il + ++  +  +v eGr ++ n+ k l + +  n +  +svl
  MMETSP1061-20121228|6404_1 509 IAEVPFSSEYKFMATVHESSPEndgpgmEDKLIvhVKGAPDRMVKLCDTQAVAGKLGETEPINAEFWQEQIAILSSHGLRVLALlrgTTAKGSVTKGDalkpeFINGRDPWLTIVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGLvDAQhpAAITGPELDSMADDELCKAVMTYNVFARASPENKIKIVKALQSQGEVASMTGDGVNDAPALKAANMGVAMGmEGTDVAREAAEMILADDNFATILSAVKEGRVVWDNLRKVLMINTPINNAQGLSVL 803
                 5688888888888888765433111122245552469*********************9999********************98444455666666665444466667778**************************************************746652358*******************************************************************972579*************************************999999999999998 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.15        33     120     155 ..      55      90 ..      34      99 .. 0.75
   2 !   55.9   0.0   2.4e-18   5.5e-16       2      98 ..     109     205 ..     108     228 .. 0.89
   3 !   75.9   2.5     2e-24   4.6e-22     104     237 ..     242     379 ..     233     412 .. 0.86
   4 ?    3.8   0.0     0.015       3.4     249     276 ..     502     529 ..     490     614 .. 0.68
   5 !   35.4   0.0   3.9e-12   8.8e-10     316     366 ..     621     671 ..     620     677 .. 0.95
   6 !   88.0   0.6   4.5e-28     1e-25     363     465 ..     699     807 ..     691     811 .. 0.91
   7 ?   -2.7   0.7       1.4   3.2e+02     440     474 ..     933     967 ..     915     975 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.15
   TIGR01494 120 ktgsektplqrkldklalifllallllallvfllvl 155
                  +++++t lq+  +++  +++l+l+++a++ +++++
  MMETSP1061-20121228|6404_1  55 TEKEKETLLQKIWNQVNNVLVLILVIVAVISLISAF 90 
                 445566778999999999999998888888877654 PP

  == domain 2    score: 55.9 bits;  conditional E-value: 2.4e-18
   TIGR01494   2 ililvllfallealakekaedalrslkdkelnskkvtvlregekeisskdlvvGDivlvkkgekvpaDgvllsg.saevdessLtGEsnpvekkeavf 98 
                 il ++++++++  +++ +ae+a+++lk  +l+s  v+v++++e e++++ +v+GDiv+++ g+k+paD+++++  ++   e++LtGEs+p+ek+ +++
  MMETSP1061-20121228|6404_1 109 ILGVIIINTIIGLIQEGSAEEAAEALKG-MLSSDAVVVRDGEEIEVPASTIVPGDIVMLALGDKIPADLRVIEVqNLASAEAALTGESVPIEKTPSII 205
                 8899***********************9.777777888888889****************************972567789************98764 PP

  == domain 3    score: 75.9 bits;  conditional E-value: 2e-24
   TIGR01494 104 fegtlklkvskiavvv.ktgsektplqrkldklalifllallllallvfllvl.ielktflkiilralillviaiPiaLpvavtialavgdkrla...ilvrslnaleelgkvdvilsDKTGTLTenkmelkkvvigge 237
                  +g ++ ++ +i ++v ++ ++kt++ +++d ++l +  +++l+al++fl+ +  +++t l ++ ++l+ +v++iP++L + vt++ a++ +++a   ++vr l a+e+lg+v+vi+sDKTGTLT+n m+++++v+ + 
  MMETSP1061-20121228|6404_1 242 ATGDFT-EIGTINKLVnSQEKQKTAVLEQIDTISLWLAGFIMLVALITFLYEWrVQGTTPLMAVNTSLVCAVAMIPEGLEAIVTVTYAWSVSKMAglnAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTNA 379
                 555555.44444454415667788899999********************976257889999****************************9999766699********************************9998774 PP

  == domain 4    score: 3.8 bits;  conditional E-value: 0.015
   TIGR01494 249 vksakkilkvlefeserkrmsvivkkpk 276
                  k a  i+ +++f+se k m+++++++ 
  MMETSP1061-20121228|6404_1 502 AKDASPIIAEVPFSSEYKFMATVHESSP 529
                 5677777777888888888877777543 PP

  == domain 5    score: 35.4 bits;  conditional E-value: 3.9e-12
   TIGR01494 316 ellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglf 366
                 +++Gl a+ dp+r++   +iee ++a+++v m+TGD++ tA ai+ +lgl+
  MMETSP1061-20121228|6404_1 621 TIVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGLV 671
                 589*********************************************985 PP

  == domain 6    score: 88.0 bits;  conditional E-value: 4.5e-28
   TIGR01494 363 lglfarvsPeqKaeivellkkkgevvamiGDGvNDapALkaAdVGiais......AkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsv 465
                  ++far sPe K +iv++l+++gev  m+GDGvNDapALkaA+ G+a++      A++aa+++l+ddn++++ +++keGr + +++ k+++++   n ++ +++l++++
  MMETSP1061-20121228|6404_1 699 YNVFARASPENKIKIVKALQSQGEVASMTGDGVNDAPALKAANMGVAMGmegtdvAREAAEMILADDNFATILSAVKEGRVVWDNLRKVLMINTPINNAQGLSVLFGII 807
                 679*********************************************87777779***********************************999888888777777665 PP

  == domain 7    score: -2.7 bits;  conditional E-value: 1.4
   TIGR01494 440 krikklilylliknliliilllvlsvlnllltslp 474
                 + ++++   +++ n+ +++++l+++vl+l +t +p
  MMETSP1061-20121228|6404_1 933 SYSSSMHPRVFQTNVFVVYSVLIVAVLQLAITYIP 967
                 55566667788888888888888888888888776 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.0   2.1e-43   4.8e-41     134     707 ..      31     680 ..      10     691 .. 0.74
   2 !   58.1   0.9     3e-19   6.8e-17     756    1029 ..     678     964 ..     676     984 .. 0.71

  Alignments for each domain:
  == domain 1    score: 138.1 bits;  conditional E-value: 2.1e-43
   TIGR01657 134 agesnGLtkgeiakrkelyGkneieikvk.sfleLlveevlkPfyvfqvfsvilWlldeyy.......yya.lli..lvlsvlsivlsv...k..eirkqlkelrdmvaksqsveViRekkeetiasdelvpgDivlisrleekllpcDavLlegsciv.nEsmltGEsvpvlKvp.ieeeedsdeklqlkekskkhvLfgGTkvlqirpdegdtkvlaiVvrTGFstskGqLvrsilypkprvfkfykdslkfi.....lflavlaligfiyvlieliknerskkklilrsldiitivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnaee.flkevteds..sekksetlkalatchsltkled.klvGDpldlkmleavgwtleeedesaleesil.avvr.............................................tedktkelsiirrfeFssalkrmsvivkteeerk...ke..llafvKGaPEtiaellsketv........psd...ykevlksytreGfRvlAlaskeLpkltlskaqdlsRdavEsn...leflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekkktlila 707
                   +s+GLt +e ++r e+yG+n++  k k ++l+ ++++v + + + +v+  ++ l+  ++        y+  +   ++l v++i +++   +  +  ++ + l+ m     +  V+R+++e+++ ++ +vpgDiv++    +  +p+D+ ++e + +   E+ ltGEsvp+ K+p i e ++++   q+   ++k++L+ GT + q +          +Vv TG  t  G +   ++ +++ ++    + +  i      f++++ali f+y +     ++ +    +  sl   + ++P +L a ++v+ + ++++++  +        +++ G + v+c DKTGTLT + + +++    +++ + +++++t  +     + +++   a  ++++  ++ k +G  l+ + ++a++ +++  d +   +  + +                                                ++       ii + +Fss++k m+ + + + e+    +e  l++ vKGaP+ + +l++ + v        p +    +e++  ++++G RvlAl + +  k ++ k + l+ + + +    l+++Gl  +  + +p+    i+e ++as+rv mitGD   Ta+ ++  +g+v+ ++ + + 
  MMETSP1061-20121228|6404_1  31 DIRSKGLTPAEATARLEKYGENKLTEKEKeTLLQKIWNQVNNVLVLILVIVAVISLISAFVipndvnpRYTnWIQiaIILGVIIINTIIgliQegSAEEAAEALKGMLS--SDAVVVRDGEEIEVPASTIVPGDIVMLA--LGDKIPADLRVIEVQNLAsAEAALTGESVPIEKTPsIIELKEGQLPKQVPLGDRKNMLYSGTLIAQGSGV-------GLVVATGDFTEIGTI-NKLVNSQEKQKTAVLEQIDTIslwlaGFIMLVALITFLYEWRV---QGTTPLMAVNTSLVCAVAMIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTNAHYKnNVHASTRTPenLIRDDAFFGEKADISKVIARNEaKKSGVELEETEATASTVKIDSSDVTPVGQGGSpDK-AfwrqaliggvlcskcklgkdggregeignptelsilratywsgvdVNAAKDASPIIAEVPFSSEYKFMATVHESSPENDgpgMEdkLIVHVKGAPDRMVKLCDTQAVagklgetePINaefWQEQIAILSSHGLRVLALLRGTTAKGSVTKGDALKPEFINGRdpwLTIVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGLVDAQHPAAIT 680
                 34566******************97765527789999999999988887777777777775333333323312221122223333332211021123444556666654..566799**********************..88899****99998876527**************8444345555556778889**********9876544.......48999********85.7789999888887777665552001134555555555555533...33444444444555567789*******************9765444444479***********************9997776665441445555555333344455555566666666666699999999999999999999966666666655322.135677777888999999999999999999**************75444447788*****************98766643222335899***************9887333333322222234899*********************************99875566******************************************************9987665 PP

  == domain 2    score: 58.1 bits;  conditional E-value: 3e-19
   TIGR01657  756 alsGkalavllekskellkklllkvkVfARvaPeqKeelvetlkkldytvlmcGDGaNDcgALkqAdvGisLseae...AsvaapFtSklasiscVtnvireGRaaLvtslqvFkylalysliqflsvliLy......lk......gsklgdgQfltidllliavvalllsrskplkkLskerps...snllsvylllsvllqfvlvilslvllvfevkkqpwykeeevvelekenakslentvvfivsl.fqylivaivnskGkpfreplyknkpfvvsllvllaillvlll 1029
                  a++G+ l  +  ++   l k ++  +VfAR +Pe+K ++v++l+  + +  m GDG ND  ALk+A+ G+++       A  aa  +    + + +++ ++eGR+   +  +v        + ++ ++++L+      ++      ++ l+ +Q+l+ +l+  +++ ++ + +++   +   +p    ++l++  l+l + l+ v+ + + v   f+++   + ++   + + ke ++ ++  + + +   + ++++ + +s ++ ++ ++ +   fvv+ +++ a+l++ ++
  MMETSP1061-20121228|6404_1  678 AITGPELDSMADDE---LCKAVMTYNVFARASPENKIKIVKALQSQGEVASMTGDGVNDAPALKAANMGVAMGMEGtdvAREAAEMILADDNFATILSAVKEGRVVWDNLRKVLM--INTPINNAQGLSVLFgiicgfSRgteqndKVILTAIQVLYCNLICAVTLGFVAAVEPAEDGIMDVPPRrvgKRLIGRFLFLRIALGTVVLVFVTVAASFWAEDILV-NQFGLDRESKECINRVHSQASNTLTFgACFVTLSARFSYSSSMHPRVFQTNVFVVYSVLIVAVLQLAIT 964 
                  56666666665555...77778899**********************************************9876511256689999999***************9988887754..4444445555555541111113311111144555566666666555555555555554444554444322268999999999999999988888888888887665.667778888888888888888877652678889999999999999988777777777776666666554 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0  11.3   1.2e-27   2.8e-25      16     276 ..     101     381 ..      71     397 .. 0.84
   2 !   23.5   0.0   2.2e-08     5e-06     377     428 ..     621     672 ..     550     683 .. 0.82
   3 !   82.5   2.6   2.8e-26   6.4e-24     422     521 ..     694     792 ..     685     808 .. 0.87

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 1.2e-27
   TIGR01525  16 slvlegalllvllllgelLeelakskasealsellelapeealllkeddseeevaveelqvgDivkVkpGekipvDGeviegesev.DesllTGEslpvekke...................gdeViaGtvnlegsleikvtkvgedstlaqivklveeaqeskakiqrladklasyfvplvlaialltflvwlalgalka.ealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvevlkdse 276
                  +++ +a++l  + + +++  + ++ a+ea ++l+ + +++a+++++ ++e ev+++++ +gDiv +  G+kip+D +vie +     e++lTGEs+p+ek++                    +  ++Gt+  +gs +  v ++g+ + + +i klv+  +++k+ + + +d+++ ++  +++++al+tfl  + +  ++   a+ ++++  v+  P +L   ++v+++ +++++a    +++   a+E+l +v++++ DKTGTLT+  ++++++ +++ + 
  MMETSP1061-20121228|6404_1 101 TNWIQIAIILGVIIINTIIGLIQEGSAEEAAEALKGMLSSDAVVVRD-GEEIEVPASTIVPGDIVMLALGDKIPADLRVIEVQNLAsAEAALTGESVPIEKTPsiielkegqlpkqvplgdrKNMLYSGTLIAQGSGVGLVVATGDFTEIGTINKLVNSQEKQKTAVLEQIDTISLWLAGFIMLVALITFLYEWRVQGTTPlMAVNTSLVCAVAMIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTNAHY 381
                 34555559**************************************6.79*******************************9886526899********9975222222222222222211134689****************************************************************988777766469**********************************************************************998886544 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 2.2e-08
   TIGR01525 377 ellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgiid 428
                 +++gl a+ D++rpe   ai+e +++  +v ++tGD++ +a a+ ++lg++d
  MMETSP1061-20121228|6404_1 621 TIVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGLVD 672
                 789********************9999**********************854 PP

  == domain 3    score: 82.5 bits;  conditional E-value: 2.8e-26
   TIGR01525 422 kelgiidevvaellPedKlakvkklqeeegkkvamvGDGiNDApALaaAdvGiamg.sgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlal 521
                 k++    +v+a ++Pe+K+++vk+lq ++g++  m GDG+NDApAL+aA+ G+amg +g+dva+eaA+++l +d+ +++++a++  r +  ++++ l++ +
  MMETSP1061-20121228|6404_1 694 KAVM-TYNVFARASPENKIKIVKALQ-SQGEVASMTGDGVNDAPALKAANMGVAMGmEGTDVAREAAEMILADDNFATILSAVKEGRVVWDNLRKVLMINT 792
                 5566.589*****************9.678899**************************************************999988888877776655 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7  10.6   3.3e-18   7.5e-16      24     258 ..     112     377 ..     100     389 .. 0.75
   2 !   14.9   0.0   7.8e-06    0.0018     315     364 ..     621     669 ..     593     678 .. 0.93
   3 !   69.8   1.5   1.7e-22   3.9e-20     366     467 ..     700     805 ..     684     810 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.7 bits;  conditional E-value: 3.3e-18
   TIGR01512  24 llllfslgetLeelaskrakealkaLlelaPdtarrlee.eVaveelkvgdvvvVkkGervPvDGevlsges.sldesalTGEsvpvekak...................gdevlaGainldgvlkievtkeaedstiakivklveeaqsekaktqrlidrlaekytlvvlliallialvssllva..........lvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvsdveal 258
                 ++++ ++  +++e +++ a+ealk +l++    +r  ee eV+++++ +gd+v++  G+++P+D +v++ +  +  e+alTGEsvp+ek +                   ++ +++G++ ++g+    v+++ + + i +i klv++ +++k+++   id ++ +++ +++l+al+++l  + +++          lv  v+  P +L + v+v+++ ++s+ a    +++   ++e+l++v+ +  DKTGTLT++ +++++++++
  MMETSP1061-20121228|6404_1 112 VIIINTIIGLIQEGSAEEAAEALKGMLSSDAVVVRDGEEiEVPASTIVPGDIVMLALGDKIPADLRVIEVQNlASAEAALTGESVPIEKTPsiielkegqlpkqvplgdrKNMLYSGTLIAQGSGVGLVVATGDFTEIGTINKLVNSQEKQKTAVLEQIDTISLWLAGFIMLVALITFLYEWRVQGttplmavntsLVCAVAMIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTT 377
                 34455555667777777777777777777666666654449*************************9997661567899********997522222222221111121112345677766666655668899999****************************************999987766551111001111344444557777788999*********************************************9998876 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 7.8e-06
   TIGR01512 315 kllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelG 364
                 +++gl a+ D +r++   ai+e +++ v +++++tGD++ +a ++ + lG
  MMETSP1061-20121228|6404_1 621 TIVGLCAIVDPPRPECILAIEEAHHASV-RVAMITGDHKDTALAIGASLG 669
                 579999********************96.88*****************99 PP

  == domain 3    score: 69.8 bits;  conditional E-value: 1.7e-22
   TIGR01512 366 evhaellPedKveivkelke....vamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiilvlillallg 467
                 +v a ++Pe+K++ivk+l++    + m GDG+NDapaL+aA++g+amG +g+dva e+A+++l +d+ +++  a+k +r +  ++++ +++ + i  +  l  l+g
  MMETSP1061-20121228|6404_1 700 NVFARASPENKIKIVKALQSqgevASMTGDGVNDAPALKAANMGVAMGMEGTDVAREAAEMILADDNFATILSAVKEGRVVWDNLRKVLMINTPINNAQGLSVLFG 805
                 799*************9986333368**************************************************999988888887777776666655555555 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.9  12.2   8.2e-19   1.9e-16      26     290 ..      84     382 ..      59     394 .. 0.74
   2 !   15.9   0.0   4.3e-06   0.00099     360     410 ..     622     671 ..     612     680 .. 0.91
   3 !   59.9   1.6     2e-19   4.6e-17     406     497 ..     697     792 ..     678     811 .. 0.84

  Alignments for each domain:
  == domain 1    score: 57.9 bits;  conditional E-value: 8.2e-19
   TIGR01511  26 lgttvaylySlvaleaf..FdelallivllllGrlleelakskaskalekLaklkpeeatllkk....dvdveelqvgdilkvkpgekipvDGvvveGesev.deslltGEslpvkkkv................g...deviaGtvngegsllvkvtkvgedtllaqivklveeAqqskakiqrlAdkvaslfvpvviaiavltfvi.W....llalevavtvliia...CPcalGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtevkelsesll 290
                 ++   a+++   +   +  + ++a+++ ++++  ++     ++a++a e+L  +  ++a ++++    +v+ + + +gdi+ ++ g+kip+D +v+e +     e++ltGEs+p++k++                g   + +++Gt+  +gs +  v ++g+ t + +i klv+  +++k+ + +  d ++ +++ +++++a++tf+  W    ++ l+++ t l+ a    P +l   + +  + + +++a    +++   a+e++ +v++++ DKTGTLT+  +++t++ +++++  
  MMETSP1061-20121228|6404_1  84 ISLISAFVIPNDVNPRYtnWIQIAIILGVIIINTIIGLIQEGSAEEAAEALKGMLSSDAVVVRDgeeiEVPASTIVPGDIVMLALGDKIPADLRVIEVQNLAsAEAALTGESVPIEKTPsiielkegqlpkqvplGdrkNMLYSGTLIAQGSGVGLVVATGDFTEIGTINKLVNSQEKQKTAVLEQIDTISLWLAGFIMLVALITFLYeWrvqgTTPLMAVNTSLVCAvamIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTNAHYK 382
                 344444444433333342266889999***********************************983333466789***********************99865279*********99864222222222222222212214579**************************************************************985484333233444444454431114555555555556667777777778*******************************999988887655 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 4.3e-06
   TIGR01511 360 laavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgiev 410
                 +++++a+ d ++pe   +ie  +++ ++v ++tGD + +a a+ ++lg+ v
  MMETSP1061-20121228|6404_1 622 IVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGL-V 671
                 5788999****************************************97.3 PP

  == domain 3    score: 59.9 bits;  conditional E-value: 2e-19
   TIGR01511 406 lgievlaevlPedKaakvkelqek..kvamvGDGiNDapaLaaadvgiaig.agtdvaieaadvvllnd.lkdvataielsrktlkkikqNllwal 497
                 +  +v+a ++Pe+K++ vk+lq++  +  m GDG+NDapaL aa++g+a+g +gtdva+eaa+++l +d  + +++a++  r +  ++++ l+  +
  MMETSP1061-20121228|6404_1 697 MTYNVFARASPENKIKIVKALQSQgeVASMTGDGVNDAPALKAANMGVAMGmEGTDVAREAAEMILADDnFATILSAVKEGRVVWDNLRKVLMINT 792
                 56799****************98532677*********************857*************975379999999999999999998887655 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3  11.3   4.9e-17   1.1e-14      32     334 ..      68     388 ..      54     438 .. 0.72
   2 ?    0.2   0.0      0.14        32     456     486 ..     641     671 ..     621     683 .. 0.78
   3 !   57.7   2.1   5.5e-19   1.3e-16     487     564 ..     700     778 ..     687     808 .. 0.92

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 4.9e-17
   TIGR01497  32 npvmfvvwvGslvtllvtiapalfgtkgknlrlfnaivtgilfitvlfan.faeavaeGrgkaqadalkktkketlakllskdgaikkvpadelkkGdvvlveaGdvipadGevieGva.svdesaitGesapvlkes......Ggdf.asvtGGtr...ivsdwlv.....vevtadpGe.sfldrmialveGaerrktpneialtvl.lvaltlvfllvvat.lyplaayagvk.isvsvlvallvalipttiGGllsaiGiaGmdrvarfnviatsGraveaaGdvdtlvldktGtitlGnrlaeefipvqGadkkkladv 334
                 n v  v+ +  ++  ++++  a    ++ n+r  n i  + + + v++ n +   + eG +   a+alk++ ++     +  dg+  +vpa+ +  Gd+v++  Gd ipad  vie    +  e+a+tGes p+ k +       g++   v  G r   + s  l+     v + +  G+ + +  +  lv+  e++kt     + ++ l    +++l++++t ly   + + ++ ++v++ +   va+ip  +  +++      ++++a++n i     ave+ G v ++  dktGt+t      + f++ + + k+++   
  MMETSP1061-20121228|6404_1  68 NQVNNVLVLILVIVAVISLISAFVIPNDVNPRYTNWI-QIAIILGVIIINtIIGLIQEGSAEEAAEALKGMLSSD--AVVVRDGEEIEVPASTIVPGDIVMLALGDKIPADLRVIEVQNlASAEAALTGESVPIEKTPsiielkEGQLpKQVPLGDRknmLYSGTLIaqgsgVGLVVATGDfTEIGTINKLVNSQEKQKTAVLEQIDTIsLWLAGFIMLVALITfLYEWRVQGTTPlMAVNTSLVCAVAMIPEGLEAIVTVTYAWSVSKMAGLNAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTNAHYKNNVHAS 388
                 4454444444455556677666666677787766655.5555555555551667889************997654..34566788889**************************9865325579*********966542222222232123333332222234444411111444455554278999999**********875555444155556777777776356666666665245667777789999*99999999999999*************************************9***********999988654 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.14
   TIGR01497 456 eqlrklGiktimltGdnrltaaviakeaGvd 486
                 e+  +  ++  m+tGd + ta +i +  G+ 
  MMETSP1061-20121228|6404_1 641 EEAHHASVRVAMITGDHKDTALAIGASLGLV 671
                 56667789***************99988854 PP

  == domain 3    score: 57.7 bits;  conditional E-value: 5.5e-19
   TIGR01497 487 dfiaeatpedkievikkeqaeGklvamtGdGtndapalaqadvgvamn.sGtqaakeaanmvdldsdptklievveiGk 564
                 + +a a pe+ki+++k  q++G + +mtGdG ndapal  a++gvam   Gt+ a+eaa+m+  d + + ++  v+ G+
  MMETSP1061-20121228|6404_1 700 NVFARASPENKIKIVKALQSQGEVASMTGDGVNDAPALKAANMGVAMGmEGTDVAREAAEMILADDNFATILSAVKEGR 778
                 56799******************************************736*******************9999998886 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.5   4.8e-05     0.011      19     126 ..      64     180 ..      52     187 .. 0.78
   2 ?    3.2   0.0     0.013         3     196     268 ..     214     289 ..     200     300 .. 0.73
   3 !   26.2   0.0   1.4e-09   3.3e-07     345     397 ..     338     390 ..     304     434 .. 0.85
   4 !   16.7   0.0   1.1e-06   0.00025     621     675 ..     620     674 ..     507     688 .. 0.93
   5 !   14.4   0.3   5.5e-06    0.0012     748     807 ..     701     759 ..     684     792 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4.8e-05
   TIGR01652  19 knlfeqfkrvaniyFLvvallqavpals....vtnrgtsivpLavvllvtaiKeaieDirrrksDkevNnkkve.....vleesakfkeikwkdlkVGdivkvkkdeeiPaDlllls 126
                 + +++q+++v  +  ++va+++ + a+     v  r+t+ + +a++l v +i  +i  i+   +++++   k +     v+ ++++  e++   +  Gdiv +  +++iPaDl +++
  MMETSP1061-20121228|6404_1  64 QKIWNQVNNVLVLILVIVAVISLISAFVipndVNPRYTNWIQIAIILGVIIINTIIGLIQEGSAEEAAEALKGMlssdaVVVRDGEEIEVPASTIVPGDIVMLALGDKIPADLRVIE 180
                 579*******************999987222245689***************9999999988777665543322001113333478899999********************97665 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.013
   TIGR01652 196 reeplsv.dnvllrgctlrntkwvlgvVvytGhdtklmkNatka...psKrskiekelnlliiilfllllvlcliss 268
                 +++pl+  +n+l+ g+ ++     +g+Vv tG+ t +   ++     + +++++ ++++++++ l  +++ ++li+ 
  MMETSP1061-20121228|6404_1 214 KQVPLGDrKNMLYSGTLIAQ-GSGVGLVVATGDFTEIGTINKLVnsqEKQKTAVLEQIDTISLWLAGFIMLVALITF 289
                 78899861567777776666.8889**********99654433312244577888999*999999888888888765 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 1.4e-09
   TIGR01652 345 pasvrtsnlneeLGqveyifSDKTGTLTqNkmefkkcsiagvsygkkleevkd 397
                 +a vr +   e LG v  i SDKTGTLT+N+m++        +y+++++  + 
  MMETSP1061-20121228|6404_1 338 NAIVRCLPAVETLGSVTVICSDKTGTLTTNVMSMTAFVTTNAHYKNNVHASTR 390
                 6788999999**************************99999999988875444 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 1.1e-06
   TIGR01652 621 LellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLlsee 675
                 L+++g  ai D    +   +ie  ++A +++ ++TGD+ +TA +ig s  L++ +
  MMETSP1061-20121228|6404_1 620 LTIVGLCAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTALAIGASLGLVDAQ 674
                 88999999999999999999*******************************9875 PP

  == domain 5    score: 14.4 bits;  conditional E-value: 5.5e-06
   TIGR01652 748 lcCRvsPsqKaavvklvkkslskvtlaigdGaNDVsmiqeAdvGvGisGkEGkq.AvmasD 807
                 +  R sP  K ++vk ++++  +v    gdG ND   +++A++Gv   G+EG   A  a++
  MMETSP1061-20121228|6404_1 701 VFARASPENKIKIVKALQSQ-GEVASMTGDGVNDAPALKAANMGVA-MGMEGTDvAREAAE 759
                 4579*************998.6777788*****************7.59999862444555 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.4   2.5e-08   5.8e-06      95     217 ..     641     772 ..     635     774 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 2.5e-08
   TIGR00338  95 kkLkekgykvaviSGgFdlvaeklkekLgl.da.....vfaNrLeve.dgkltGkvegeivdesakaktllkllekegislektvavGDGanDlsmikaAglgiaf..nakpvlkekadiviekkdltdile 217
                 ++ +++ ++va+i G  +  a  + + Lgl da     + + +L+ + d++l   v +  v ++a  + + k+++  + + e   + GDG nD +++kaA++g+a   ++  v +e+a++ + + +++ il+
  MMETSP1061-20121228|6404_1 641 EEAHHASVRVAMITGDHKDTALAIGASLGLvDAqhpaaITGPELDSMaDDELCKAVMTYNVFARASPENKIKIVKALQSQGEVASMTGDGVNDAPALKAANMGVAMgmEGTDVAREAAEMILADDNFATILS 772
                 5567788999999999999999999999985434554578899*9988*******************************************************99622688999******999999998876 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.7   3.9e+02      19      48 ..     634     663 ..     633     670 .. 0.80
   2 !   18.6   0.8   1.1e-06   0.00025     196     246 ..     713     764 ..     711     773 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.7
   TIGR00099  19 petkealaklrekGikvvlaTGRsykevke 48 
                 pe + a++++ +  ++v+  TG ++  ++ 
  MMETSP1061-20121228|6404_1 634 PECILAIEEAHHASVRVAMITGDHKDTALA 663
                 677889****************88766655 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 1.1e-06
   TIGR00099 196 laeklgislenviaiGDseNDieMleaagvgvamg.naneelkaladyvtds 246
                 ++++l+ + e   + GD+ ND++ l+aa++gvamg ++++ ++++a+++ ++
  MMETSP1061-20121228|6404_1 713 IVKALQSQGEVASMTGDGVNDAPALKAANMGVAMGmEGTDVAREAAEMILAD 764
                 667777777777889*******************956777888888877665 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1     0.084        19       1      65 [.     355     419 ..     355     442 .. 0.74
   2 ?    7.9   0.0    0.0027      0.61     137     177 .]     704     740 ..     683     740 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.084
   TIGR01488   1 laifDfDgTLtdqd.sliellkkllgtndevkeltrlvlegrisfedrlgrrlkllerslleelak 65 
                 ++++D  gTLt +  s++ ++++ + ++ +v+    +++e+ i+  + +g++++  +   ++e +k
  MMETSP1061-20121228|6404_1 355 VICSDKTGTLTTNVmSMTAFVTTNAHYKNNVH-ASTRTPENLIRDDAFFGEKADISKVIARNEAKK 419
                 5789999***987537899********87777.555678899999999999998877776554444 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0027
   TIGR01488 137 npsgeeKgkvlkelleeskedrkeiiavGDsvnDlpllklv 177
                 + s e+K k +k+l++++      + + GD+vnD p+lk++
  MMETSP1061-20121228|6404_1 704 RASPENKIKIVKALQSQGEV----ASMTGDGVNDAPALKAA 740
                 6788999999*976665533....569***********975 PP

>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021     0.047      22      79 ..     626     687 ..     619     714 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00021
   TIGR03413  22 avvvDpgeaepvlealeekglkleaillTHhHaDH...vggvaellekfp.vkvvgpaeeri 79 
                 +++vDp++ e +l++ e+++ +++  ++T  H+D    +g+   l+++ + ++++gp+ +++
  MMETSP1061-20121228|6404_1 626 CAIVDPPRPECILAIEEAHHASVRVAMITGDHKDTalaIGASLGLVDAQHpAAITGPELDSM 687
                 89********************************6333788888888776699999998754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1050 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       343  (0.0836177); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.50u 0.22s 00:00:01.72 Elapsed: 00:00:01.31
# Mc/sec: 1057.93
//
Query:       MMETSP1061-20121228|6407_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-14   50.6  10.2      6e-14   50.1   7.1    1.2  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
  ------ inclusion threshold ------
        4.1    5.9  11.6        0.1   11.0   0.9    3.1  3  TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
        4.6    4.7  18.6        0.1   10.1   5.3    2.5  3  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.1   7.1   4.4e-17     6e-14      67     297 ..      83     308 ..      69     316 .. 0.84

  Alignments for each domain:
  == domain 1    score: 50.1 bits;  conditional E-value: 4.4e-17
   TIGR00817  67 lllpvaivhtighv.tsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkksldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyq.qvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                  +lp+ ++  +g + + n  l+ v+vSf+ + + l  +f+v ls+f+lg +  l + l L  +v G  + +  e++f ++g  + + + +    ++i+ Kkil   + d+ +l  +    + +l   + ++ e+  +l +++ +    v    ++  ++va   +f +    v+ + ++  spl + ++ + K  +   ++  +++++ +++ v+G+ + + G  lY  vk +
  MMETSP1061-20121228|6407_1  83 KILPLSFIF-VGMItFNNLCLKWVEVSFYNVARCLTLVFNVFLSHFILGSTTSLRTALCLGIVVCGFFMGAKGEVNFTFIGTAFGICASLFVSLNSILTKKILPVVDNDHWKLTFYNNANASVL-FLPLIAYEEAGVLYQALDKQ--MVSP-LFWCAMMVAG--FFGFSIgIVTVMQIKATSPLSHNISGTAKAAAQSMMAFYIWKNPATVMGVMGMFVVLGGSLLYTIVKMR 308
                 678888764.5555167899**********************************************************************999**********999999988888888545444.45568999999999665554..3333.3444555554..5555445************************9999999**************************99986 PP

>> TIGR01726  HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.9   7.6e-05       0.1      27      91 ..      88     152 ..      83     156 .. 0.81
   2 ?    0.3   0.2      0.17   2.3e+02       7      41 ..     150     184 ..     143     188 .. 0.73
   3 ?   -0.0   0.3       0.2   2.8e+02      18      40 ..     233     255 ..     227     281 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7.6e-05
   TIGR01726  27 glllallrlsknrllrrlatvyveliRgtPllvqlfliyfgLpligirlsaltaavlaltlfesa 91 
                 +++   + +++n +l+++   + ++ R++ l++ +fl +f L  +     al  +++  ++f +a
  MMETSP1061-20121228|6407_1  88 SFIFVGMITFNNLCLKWVEVSFYNVARCLTLVFNVFLSHFILGSTTSLRTALCLGIVVCGFFMGA 152
                 55666677899999****************************97766666666677666666665 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.17
   TIGR01726   7 kGlllTllisvlalllglvlglllallrlsknrll 41 
                  G++  +  ++++ ++g++++l+++l ++   ++l
  MMETSP1061-20121228|6407_1 150 MGAKGEVNFTFIGTAFGICASLFVSLNSILTKKIL 184
                 46666677788888888888888888777766665 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.2
   TIGR01726  18 lalllglvlglllallrlsknrl 40 
                  a++++ ++g+ ++++ ++++++
  MMETSP1061-20121228|6407_1 233 CAMMVAGFFGFSIGIVTVMQIKA 255
                 56777888888888887777665 PP

>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   1.9      0.12   1.7e+02     102     129 ..      96     123 ..       2     148 .. 0.68
   2 ?   -1.1   3.3      0.19   2.6e+02     102     173 ..      96     173 ..      77     188 .. 0.52
   3 ?   10.1   5.3   7.3e-05       0.1      89     222 .]     166     302 ..     152     302 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.12
   TIGR00803 102 vyfekilkdkdtsfyvrnlqlplfgllv 129
                 +++ + lk+ + sfy+    l+l+  ++
  MMETSP1061-20121228|6407_1  96 TFNNLCLKWVEVSFYNVARCLTLVFNVF 123
                 3445566777777775444444333333 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.19
   TIGR00803 102 vyfekilkdkdtsfyvrnlqlplfgllvtfvvlllsdgsl.......isnkgffigyttavwivvllnvvgglcvglvv 173
                 +++ + lk+ + sfy+    l+l+  +++   +l s+ sl       i+  gff+g   +v +  +  ++ g+c +l v
  MMETSP1061-20121228|6407_1  96 TFNNLCLKWVEVSFYNVARCLTLVFNVFLSHFILGSTTSLrtalclgIVVCGFFMGAKGEVNFTFIGTAF-GICASLFV 173
                 4567789999999998555555544444322222233333000111133444444444444444333333.34444444 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 7.3e-05
   TIGR00803  89 avlsallssglagvyfekilkdkdt....s.fyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                 ++ ++l++s++  +  +kil + d+    + fy++  +  lf+ l  +  + +  ++l+++++ +     a++++++    +g+++ + +k ++++  +i++  ++   +++ +++ ++++++++++g+++v  + llY
  MMETSP1061-20121228|6407_1 166 GICASLFVSLNSIL-TKKILPVVDNdhwkLtFYNNANASVLFLPLIAYEEAGVLYQALDKQMV-SPLFWCAMMVAGFFGFSIGIVTVMQIKATSPLSHNISGTAKAAAQSMMAFYIWKNPATVMGVMGMFVVLGGSLLY 302
                 66677777766444.444443333222323488888888888877776666666666666666.66777799*****************************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|6409_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1040.07
//
Query:       MMETSP1061-20121228|6411_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|6410_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 383.40
//
Query:       MMETSP1061-20121228|6412_1  [L=912]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (912 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 3439.26
//
Query:       MMETSP1061-20121228|6413_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-41  140.7   4.5    7.5e-25   85.5   0.0    4.1  4  TIGR02409 carnitine_bodg: gamma-butyrobetaine hydroxylase
    1.5e-27   94.9   2.4    4.2e-22   77.0   0.1    4.0  2  TIGR02410 carnitine_TMLD: trimethyllysine dioxygenase


Domain annotation for each model (and alignments):
>> TIGR02409  carnitine_bodg: gamma-butyrobetaine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0005         1      49      80 ..     201     232 ..     197     248 .. 0.82
   2 !    9.7   0.0   4.2e-05     0.085     107     146 ..     287     326 ..     258     338 .. 0.86
   3 !   85.5   0.0   3.7e-28   7.5e-25     162     307 ..     369     520 ..     351     529 .. 0.82
   4 !   37.9   0.1   1.1e-13   2.3e-10     310     362 ..     547     600 ..     541     604 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0005
   TIGR02409  49 ikkviidddgnlvvifvpeghlsefsaeWLkk 80 
                 i++ i +++++lv+++++ g++s f+ eWL  
  MMETSP1061-20121228|6413_1 201 INRSIDEKKKRLVKLWWNYGETSVFDLEWLVN 232
                 55566678899******************965 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 4.2e-05
   TIGR02409 107 elslpkldfeevlkdeevllewLsavrkvGlvvlegvptk 146
                  +s+ k+d++e +++e++l+e ++ + + G + ++++p++
  MMETSP1061-20121228|6413_1 287 AASISKFDYKETMENEDTLYEAMRDIFEHGAILIQNAPDV 326
                 47899*********************************85 PP

  == domain 3    score: 85.5 bits;  conditional E-value: 3.7e-28
   TIGR02409 162 etnyGllfevrakvdannlAYtnlgLslHtDlPardhvPtlqlLhclestve......GGdsllvDGFavaeaLrkekpeafkiLsstsvefreeGddkvdlrakakvieLd.ddgevvkirfnnasldavfdvevekvqdfYaAlrrfveli 307
                  + yG +f+v++k +a+n+AYtn+ L+ H Dl + + +P lqlLhc   t++      GG+s+l+DG a+ae+Lr  +p+ f++L +t + f +e  +  d+ + ++ i +d   g+vv+ +++  +  ++   +   v+d+ +A++    ++
  MMETSP1061-20121228|6413_1 369 GSLYGDIFHVKSKHNAENIAYTNVALPPHQDLTYYESKPFLQLLHCATVTKNnsnyivGGESVLIDGMAAAEELRRIAPDVFNVLLNTEATFVKE-RHDADMVSPKPHIVVDrTYGQVVEFNWSPPFEGPLQINPSVAVEDYVRAYQALEIMV 520
                 467*******************************************864432223344*************************************.7777888888877777256*********977775444456689***99999765444 PP

  == domain 4    score: 37.9 bits;  conditional E-value: 1.1e-13
   TIGR02409 310 pelkltfkleeGdlvlfdntRllHaRdafea.kegkRhlqGaYaDkDvllsrlr 362
                 ++++  + l++G++++f+n+R+lH+R++f+   + +Rhl G+Y+D     s+ r
  MMETSP1061-20121228|6413_1 547 KKYTWERTLQAGEILVFNNQRMLHGRRSFNCfGTVQRHLIGCYTDAIDTASQYR 600
                 55667789*************************************877777765 PP

>> TIGR02410  carnitine_TMLD: trimethyllysine dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00011      0.22     116     144 ..     283     332 ..     166     339 .. 0.54
   2 !   77.0   0.1   2.1e-25   4.2e-22     153     360 ..     368     602 ..     354     604 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00011
   TIGR02410 116 d.....................lkkflkeiykyGfilvdnvpvsseatek 144
                 d                     l + +++i+++G il++n p   e t+k
  MMETSP1061-20121228|6413_1 283 DnpkaasiskfdyketmenedtLYEAMRDIFEHGAILIQNAPDVGEMTKK 332
                 22222222233333333444489999****************99999998 PP

  == domain 2    score: 77.0 bits;  conditional E-value: 2.1e-25
   TIGR02410 153 rethyggvWdFtsdlskkDtAYtsleissHtDgtYfeetpGlqlFHlLkhdgt......GGetvlvDvfkvaeklkkkapedfelLtkvkieahsageseevfieaevlepvlkldpatgeleqvRwntsDRasldtlaksskeevpkfYkAle...................klskiikd..penevevklkpGevlifDnwRvlHaRtsFtG....kRrlCGaYltRDdflararll 360
                 +   yg +++  s    ++ AYt++++ +H D tY+e  p lql H+ +  ++      GGe+vl+D++ +ae+l+  ap+ f++L +++ ++ +         ++++++p + +d + g+++   w +    +l+  ++ + e+  + Y+Ale                    l+++++d  +++  e  l++Ge+l+f+n R+lH+R+sF+     +R+l G+Y    d  +++r+l
  MMETSP1061-20121228|6413_1 368 HGSLYGDIFHVKSKHNAENIAYTNVALPPHQDLTYYESKPFLQLLHCATVTKNnsnyivGGESVLIDGMAAAEELRRIAPDVFNVLLNTEATFVKERH----DADMVSPKPHIVVDRTYGQVVEFNWSPPFEGPLQINPSVAVEDYVRAYQALEimvdnnyddmnceptllppSLETLLRDyaKKYTWERTLQAGEILVFNNQRMLHGRRSFNCfgtvQRHLIGCYTDAIDTASQYRQL 602
                 5678*******************************************876653344555****************************99988765444....5677788899999999*********9999999994444588999999999863333322222222222222345667773234455678*********************7433447********999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 2665.33
//
Query:       MMETSP1061-20121228|6418_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.1   0.0      0.023   11.6   0.0    1.2  1  TIGR01721 AMN-like: putative AMP nucleosidase


Domain annotation for each model (and alignments):
>> TIGR01721  AMN-like: putative AMP nucleosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.7e-06     0.023     156     231 ..      55     129 ..      47     141 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.7e-06
   TIGR01721 156 ivyttnirvwefnkkfrkklyetkaqsvemecatllaaGyrrklplGalllisdlplrkeGiktkesdqlvldtyt 231
                 ++yt n  ++e+ +  r++ +++    v+  +  ll aGy ++  + a l +++   ++e    +es+q  +d+++
  MMETSP1061-20121228|6418_1  55 TTYTRNLELYEYTRTHRRHGRKKLVIPVQKRSQILLDAGYTEEEIIKAALKVAQIKSQREET-LNESQQKGFDKFS 129
                 79****************************************99999999998887777654.3556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 834.17
//
Query:       MMETSP1061-20121228|6417_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-82  272.4   0.0    1.4e-81  271.8   0.0    1.3  1  TIGR01496 DHPS: dihydropteroate synthase
    4.4e-25   86.2   0.1    3.4e-23   80.1   0.1    3.1  2  TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
     0.0019   14.6   0.1     0.0034   13.8   0.1    1.3  1  TIGR00284 TIGR00284: dihydropteroate synthase-related protein


Domain annotation for each model (and alignments):
>> TIGR01496  DHPS: dihydropteroate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.8   0.0     1e-84   1.4e-81       2     257 ..     396     672 ..     395     673 .. 0.91

  Alignments for each domain:
  == domain 1    score: 271.8 bits;  conditional E-value: 1e-84
   TIGR01496   2 imgilNvTpDSfsdggkfls....kkkalehaeklleeGadiiDvGgestrPgaeevspeeEleRvvpvikalreelsdvkiSvDtykaevaeaaleagvdiiNDvsglk.dpemlevvaeadvelvlmhskgtpetmqeevky...edvveevlrfleerveelleagvakekivlDpGigFaktleenlellkrleelka..lglplLvgvSrKsfigallg.teaeerlegtlalslla..........vqkGakilRVHdvketrdalkvlea 257
                 +mgilNvTpDSfsdggk  +    +++ +++a ++++eGa+iiD+GgestrPga+e+++ee ++R vpvi+alre++ ++ +S+Dt++a vaeaa+ ag+di+NDvsg++ d++ml +va ++v++vlmh++gtpe+mq  ++y     vv+ev+r l er  ++++ag+ ++  +lDpGigFak+l  nl llk+ ++l++   ++plL+g+SrK figal g t ae+r++gt++  ++a          +  G++ilRVH+vk +++a +v++a
  MMETSP1061-20121228|6417_1 396 VMGILNVTPDSFSDGGKWREgddgVDRSVARALEMVDEGATIIDIGGESTRPGATEIEVEEQIRRTVPVIRALRERCREMVVSIDTRHAAVAEAAVRAGADIVNDVSGGTfDRDMLPTVARLRVPIVLMHMRGTPESMQGLTDYgteGGVVDEVTRALLERSLAAEDAGIPRWMQILDPGIGFAKDLDGNLSLLKHYSQLRRdlGDFPLLLGTSRKGFIGALSGeTVAENRDFGTVGSCVAAlclgrsgaddHSLGCNILRVHNVKGAKQATAVMDA 672
                 9***************987622225568899*****************************************************************************************************************99889****************************************************99557******************777899****997665542222222222345899****************997 PP

>> TIGR01498  folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.051        70       1      26 [.     153     179 ..     153     202 .. 0.82
   2 !   80.1   0.1   2.5e-26   3.4e-23      26     127 ..     204     332 ..     187     333 .. 0.95

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.051
   TIGR01498   1 avvalG.Nlgdrlkrlkaalealaeka 26 
                 +++a+G N gd + +++  le l + +
  MMETSP1061-20121228|6417_1 153 VFLAVGsNQGDSFRNIATGLELLCDPT 179
                 589**************9999998755 PP

  == domain 2    score: 80.1 bits;  conditional E-value: 2.5e-26
   TIGR01498  26 avklekvssiyetepvgfkdqpdFlNavvevettlaprellkllkaiEkelgRvr.eekwgpRtlDlDillygd..........................evldeerlevPhpraeerafvllPLaeia 127
                 +++l + s +y t+p++ +dqp F N++ve++t  +p  llk+lk +E+++gR+  + ++gpR lDlDilly+d                          +++d+++l++Ph+ + er+fvl+PL+++a
  MMETSP1061-20121228|6417_1 204 PTELVRSSFLYHTKPMYVTDQPSFWNGAVELDTDHDPSSLLKRLKLVEEHMGRNFeQIRNGPRPLDLDILLYYDnnnnnnnnnnadhaeseseskstptpVIVDTPELVIPHRSLAEREFVLAPLIDVA 332
                 5778888999********************************************9899****************9***********************9999************************986 PP

>> TIGR00284  TIGR00284: dihydropteroate synthase-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   2.5e-06    0.0034     170     242 ..     426     508 ..     416     534 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.5e-06
   TIGR00284 170 kairrlrkgadmvalGlvsneddadk..vkek.......vkialdll.dspvsvdteslkelieavkaGaslvlsvdaenlee 242
                 +a++++ +ga ++++G  s+   a +  v+e+       ++ +++   + +vs+dt     +  av+aGa++v  v  +++++
  MMETSP1061-20121228|6417_1 426 RALEMVDEGATIIDIGGESTRPGATEieVEEQirrtvpvIRALRERCrEMVVSIDTRHAAVAEAAVRAGADIVNDVSGGTFDR 508
                 67899999*******99887766654114455111111134556666789************************999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 2796.52
//
Query:       MMETSP1061-20121228|6421_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.2   2.8      0.013   13.1   1.9    1.1  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   1.9   3.3e-06     0.013     163     225 ..      29      91 ..       3     125 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.3e-06
   TIGR03354 163 lkaldqepasaadlddgalsaelaeevaealpadlasidaestlepelaplpaaqpapapqeq 225
                 +++l++ +a  a + + a++++++++ a++ ++ +++  ++ +++p++ + p++qp+p+pq+ 
  MMETSP1061-20121228|6421_1  29 PSSLGSTRADRATVAEEAVRNSAKTSAANRHDKVWTRSHRHRHQNPDPHQNPQPQPQPQPQPA 91 
                 35677777777777887899999999999********************99999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1010.00
//
Query:       MMETSP1061-20121228|6423_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       282  (0.068747); expected 82.0 (0.02)
Passed bias filter:                      210  (0.0511945); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|6420_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-10   38.4   3.2    0.00011   18.7   0.2    2.9  3  TIGR00604 rad3: DNA repair helicase (rad3)


Domain annotation for each model (and alignments):
>> TIGR00604  rad3: DNA repair helicase (rad3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.014        58      56      96 ..       7      46 ..       2     164 .. 0.82
   2 !   18.7   0.0   2.8e-08   0.00012     170     218 ..     220     268 ..     210     273 .. 0.90
   3 !   18.7   0.2   2.7e-08   0.00011     222     251 ..     326     355 ..     314     356 .] 0.90

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.014
   TIGR00604 56 ekpevkkiiYasrthsqleqlveelrklkearskeekvees 96
                ++p  ++i+Ya+   ++  +++ el+ +++  +++   +++
  MMETSP1061-20121228|6420_1  7 KHP-RRRIVYATNSAPETRRVIGELAIVMNHWQHHHHQQQH 46
                445.7889999999999999999999998776665554443 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2.8e-08
   TIGR00604 170 mdiedlvelgkklelCPYfasrkalekanvvvlpYqyLldpkirealsl 218
                 +d ed +  ++k+ +C   ++++a+++anv v+ Y+yLldp +++ + +
  MMETSP1061-20121228|6420_1 220 WDGEDASTVCRKSWCCVQHLTQYAIQHANVLVVTYPYLLDPMTARLIGN 268
                 567899999***********************************98876 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 2.7e-08
   TIGR00604 222 ksivifDEAHNldnviisalsselskrslk 251
                 + +v+fD AHN+d ++ +als+ +  ++l+
  MMETSP1061-20121228|6420_1 326 DAVVVFDHAHNIDAACVDALSATINLQDLE 355
                 58**********************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1468.38
//
Query:       MMETSP1061-20121228|6422_1  [L=847]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-21   72.8   0.0    5.6e-11   39.7   0.0    2.2  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    9.2e-14   49.6   0.0    1.6e-13   48.8   0.0    1.3  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    1.8e-13   47.9   0.0    1.3e-06   25.3   0.0    2.6  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    5.6e-13   46.1   0.1    1.3e-07   28.4   0.1    3.0  2  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    6.4e-12   43.0   0.1    0.00016   18.6   0.0    3.1  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    1.9e-05   21.6   0.0    3.5e-05   20.8   0.0    1.3  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    2.7e-05   21.0   0.0    0.00059   16.6   0.0    2.1  2  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
      0.003   14.6   0.0       0.16    8.9   0.0    2.2  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0054   13.7   0.0     0.0077   13.2   0.0    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
  ------ inclusion threshold ------
      0.012   12.8   0.0      0.019   12.1   0.0    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.4e-13   5.6e-11       4     183 ..     474     645 ..     471     659 .. 0.79
   2 !   30.9   0.0   6.6e-11   2.7e-08     275     340 ..     749     811 ..     713     826 .. 0.88

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.4e-13
   TIGR01988   4 IvGgGlvGlalAlaLassadlkvalveakaaekakspafdnRvsAlsaasiellekigvwdklekkraqpiqkirvsdagskgalefdaaevgaeaLgyvvenkvlqqaLlealqekknkvtllapaeveelere..sdaveltlsdget....leakLlvgADGanSkvrqaagikttewnyeqs 183
                 IvG+G++G++lA+ L+ ++  +v l+ea+ + +  +   +   +A+ ++++++l++    ++l+  r ++  ++r +d++    le+++ +  +++ g++  ++ l++ + +  + +++   +++ +++ +++ +    +++ ++sd ++    ++++LlvgADG +S+vr+ +  k ++++y+ +
  MMETSP1061-20121228|6422_1 474 IVGCGIAGATLAAGLDPEK-YRVRLFEASHQVR--E---QGYGLAIWPSTMKILRDELQIEDLDL-RKSSTMTLRSVDQK----LEMKSPAT-SQDKGFMKRSTLLKNIIAKVEERHPE--SIYTGHKALRVRFDgnCAHTTYETSDFKQplisYSSDLLVGADGVQSTVRRYVAMKLDSRQYGSM 645
                 9***************766.********85443..3...3458***********99876777887.77777777777776....77777655.7777***9999999999888888886..566666666666661155555556666669999****************************9865 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 6.6e-11
   TIGR01988 275 yvaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradna 340
                  +++  +liGdAAh   Pl+++  Nl ++D++ La++l++   ++ d+ + ++L+++++ +r++  
  MMETSP1061-20121228|6422_1 749 WCQPNAVLIGDAAHAYGPLTAKMANLAINDAHCLATLLNH---HQDDLSQEEILNEWQKIQRPKFD 811
                 58899*********************************97...46699*********998887655 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   3.9e-16   1.6e-13       5     279 ..     474     768 ..     471     777 .. 0.76

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 3.9e-16
   TIGR02032   5 vvGaGpaGssaAlrlakkGlrVlllekkelprekeCggalskraveelelpk.elivnevrkariispngek.veieee..eeealvidRkefDelLaekAqe.agaelllettvlsveiedekvkvevred....ekkevtakivigAdGakskvakklglk..kekrelavalraeveeevee..evdedsvevyidkglvpggYgWvfPkgdgtanvGvgvls.....eekedlkkklkeflaerp.eklkdaeevevkgal...iPirradektvtgnvllvGDAAglVkPlt 279
                 +vG G+aG+++A+ l  + +rV l+e ++ +re   g a+ +  ++ l+ +   + +  ++ +++ + + ++ +e +++  ++    ++R  + + ++ k++e +   +++++++l+v+++++ +++++++       +++++++++gAdG +s v++ + +k   +++  + a+r  ++++++e  ++ +d+ ++ + + +  ++Y   + + ++ +nv v         +    + + l + +++ + + + ++ ++e+++ l     +    e+  + n++l+GDAA    Plt
  MMETSP1061-20121228|6422_1 474 IVGCGIAGATLAAGLDPEKYRVRLFEASHQVREQGYGLAIWPSTMKILRDELqIEDLDLRKSSTMTLRSVDQkLEMKSPatSQDKGFMKRSTLLKNIIAKVEErHPESIYTGHKALRVRFDGNCAHTTYETSdfkqPLISYSSDLLVGADGVQSTVRRYVAMKldSRQYGSMTAYRFLITSPSQEllKETQDQWNMSVSETIHSPSYH--VSNHEDSLNVVVLEYDgkppsSPRSATLEELRDVAQRSNmSFVMNMIDTEEISDLmcySTFHVDCEPWCQPNAVLIGDAAHAYGPLT 768
                 9************************************************99854455555556666666555577777777777778899888888888887626678999***********6666666665544446899*****************8887733666666778888888885543367899*************996..55555569998887778788755666778888888888854444444555555552224555666788999*********9888877 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.9e-07   7.9e-05       4     178 ..     474     643 ..     471     657 .. 0.79
   2 !   25.3   0.0   3.1e-09   1.3e-06     273     331 ..     749     807 ..     722     825 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.9e-07
   TIGR01984   4 ivGgglvGlslAlaLsrksklkialieaksaeaakssfdarslalsagskqile.klgiweklekeatpikdihvsdrgafgalelraeevalpaLGyVveladlkqallkrlaekkkiklyapaelkeierekdeaevkldneq......kleakLlvaAdGanskvreslsiaeeevdye 178
                 ivG+g++G++lA  L+ +   ++ l+ea +  ++        la+   +++il+ +l+i+ +l+ +     ++  +d+    +le+++   +++  G   + + lk++++k ++e +  ++y+ ++  ++  + + a+ + ++        + +++Llv AdG +s+vr+ + ++    +y 
  MMETSP1061-20121228|6422_1 474 IVGCGIAGATLAAGLDPEK-YRVRLFEASHQVRE----QGYGLAIWPSTMKILRdELQIE-DLDLRKSSTMTLRSVDQ----KLEMKSPATSQD-KGFMKRSTLLKNIIAK-VEERHPESIYTGHKALRVRFDGNCAHTTYETSDfkqpliSYSSDLLVGADGVQSTVRRYVAMKLDSRQYG 643
                 9****************99.*******9876666....6779***********7357765.56666666667777777....566666644444.4776666666666555.99999999*******9999999988888766555567777789****************99999888885 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 3.1e-09
   TIGR01984 273 qvkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylkerk 331
                   ++  vlig+aA+   P+ +   Nl + D+  La +l+++++dl + ++l+e++k ++
  MMETSP1061-20121228|6422_1 749 WCQPNAVLIGDAAHAYGPLTAKMANLAINDAHCLATLLNHHQDDLSQEEILNEWQKIQR 807
                 568899************************************************98764 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.8e-05    0.0074       3      51 ..     472     519 ..     471     533 .. 0.87
   2 !   28.4   0.1   3.2e-10   1.3e-07     145     359 ..     613     810 ..     564     825 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.8e-05
   TIGR03219   3 vaiiGGGiaGvalalelsksshlnvklfeaapafgevGaGvsfGanavr 51 
                 v i+G GiaG +la++l  + +  v+lfea+ +  e G G++  + +++
  MMETSP1061-20121228|6422_1 472 VDIVGCGIAGATLAAGLDPE-KYRVRLFEASHQVREQGYGLAIWPSTMK 519
                 78**************9866.569****************988776655 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 3.2e-10
   TIGR03219 145 eyradlligadGiksalrdyvlegagqaaveprfsGtsayrGlvdsaelreayraagldehlvdvpqmylgldghiltfpvrkGk.linvvafvsdrsqakptwpsdapwvreaskremldafagwgdaarvllelieaptlwalhdlaelpgyvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrrera 359
                 +y +dll+gadG++s++r yv         + ++   +ayr l+ s +       + l ++  d  +m +++  h  ++ v + +  +nvv +  d + ++    +     r++++r  ++   ++ d+     e i     ++  +++  p + +   +liGdaaha  p     a   ++da+ la+ll++ + + +  +e+l+ +++++r++ 
  MMETSP1061-20121228|6422_1 613 SYSSDLLVGADGVQSTVRRYVAMK----LDSRQYGSMTAYRFLITSPS-------QELLKETQDQWNMSVSETIHSPSYHVSNHEdSLNVVVLEYDGKPPSSPRSATLEELRDVAQRSNMSFVMNMIDT-----EEISDLMCYSTFHVDCEP-WCQPNAVLIGDAAHAYGPLTAKMANLAINDAHCLATLLNHHQDDLS-QEEILNEWQKIQRPKF 810
                 6899****************9654....4456899999******9864.......445556677788888889999999998765269***99999887776444555556666666655555555555.....444444445555555555.5677889********************************9887765.5789999999999974 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0      0.01       4.2       4      23 ..     473     492 ..     470     511 .. 0.82
   2 !   18.6   0.0   3.9e-07   0.00016     119     201 ..     566     645 ..     530     661 .. 0.73
   3 !   16.6   0.0   1.6e-06   0.00065     329     369 ..     748     788 ..     739     816 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.01
   TIGR01989   4 vivGgGlvGlalAaalkknp 23 
                  ivG G++G++lAa+l+ ++
  MMETSP1061-20121228|6422_1 473 DIVGCGIAGATLAAGLDPEK 492
                 49*************98654 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 3.9e-07
   TIGR01989 119 ilasllerlkeeksdnvkvknkaklksvtlpkkspndnsnlvkikledg....etlktklliGADGanSkvRkaanikvtgwnYnqs 201
                 +l+ ++++++e +   +++ + +k+ +v++       n  +++ +++d       ++++ll+GADG++S+vR+++ +k  + +Y  +
  MMETSP1061-20121228|6422_1 566 LLKNIIAKVEERH--PESIYTGHKALRVRFDG-----NCAHTTYETSDFkqplISYSSDLLVGADGVQSTVRRYVAMKLDSRQYGSM 645
                 4455556666655..56666677777776664.....33444444444422235799********************9999998765 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 1.6e-06
   TIGR01989 329 eYvtervALvGDAAHrvHPLAGqGvNlGfsDvesLvkalae 369
                  +++  + L+GDAAH   PL  +  Nl ++D++ L++ l++
  MMETSP1061-20121228|6422_1 748 PWCQPNAVLIGDAAHAYGPLTAKMANLAINDAHCLATLLNH 788
                 57889999****************************99875 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   8.5e-08   3.5e-05       3     199 ..     472     675 ..     470     688 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 8.5e-08
   TIGR02023   3 vlviGggpsGaaaaetLakagievillerelarik..PCGGaiPlali....eefdlPedlidrrvrkakvisPsaveikvdlpveeeyvgmvrrevfDeyLreraqkaGaeliegllkklerded..kltleyrekekeageekksveadvviGaDGakskvakelgl...gknlkkvialqeriklpde.klkyyeeladvyldgev 199
                 v ++G g +Ga+ a  L  + ++v l+e   ++++    G ai ++ +    +e ++ edl  r+  ++ ++s   ++ +++ p   +  g ++r ++ + +  + +++  e i +  k+l++  d    + +y++   +  +   s  +d+ +GaDG +s+v + + +   ++++  + a++  i  p++  lk  +++ ++ + + +
  MMETSP1061-20121228|6422_1 472 VDIVGCGIAGATLAAGLDPEKYRVRLFEAS-HQVReqGYGLAIWPSTMkilrDELQI-EDLDLRKSSTMTLRSVD-QKLEMKSPATSQDKGFMKRSTLLKNIIAKVEERHPESIYTGHKALRVRFDgnCAHTTYET--SDFKQPLISYSSDLLVGADGVQSTVRRYVAMkldSRQYGSMTAYRFLITSPSQeLLKETQDQWNMSVSETI 675
                 779*************************98.55551166789988765112245555.44445667777777776.56666667778889**********************999887777665552166666664..46777888999************987666551122367788999999999888355667777777776655 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.039        16      84     172 ..     545     636 ..     524     653 .. 0.78
   2 !   16.6   0.0   1.4e-06   0.00059     273     325 ..     746     798 ..     717     807 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.039
   TIGR02360  84 vrvdlkkltggksvlvyGqtevtrdlyeareaaglktvyeadevrlhdlesdrpkvtfekdgeekrl...dcdfiaGcdGfhGvsrksipae 172
                 +++++k  + +++     ++ + ++++   e++  +++y  ++     ++++  + t+e+ + ++ l     d ++G+dG     r+ +  +
  MMETSP1061-20121228|6422_1 545 QKLEMKSPATSQDKGFMKRSTLLKNIIAKVEERHPESIYTGHKALRVRFDGNCAHTTYETSDFKQPLisySSDLLVGADGVQSTVRRYVAMK 636
                 55666665555666666677788889988999999999999999999999********99998875433379**********9999988654 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 1.4e-06
   TIGR02360 273 aepmryGrlflaGdaahivpptGakGlnlaasdvaylyealleaykekdsagl 325
                 +ep       l Gdaah   p  ak  nla+ d + l + l ++ ++ +++ +
  MMETSP1061-20121228|6422_1 746 CEPWCQPNAVLIGDAAHAYGPLTAKMANLAINDAHCLATLLNHHQDDLSQEEI 798
                 7888888889*****************************99999988777655 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0004      0.16       4     112 ..     474     594 ..     472     633 .. 0.61
   2 ?    3.4   0.0     0.019       7.7     260     317 ..     751     809 ..     727     825 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0004
   TIGR01790   4 viGgGlAglaiAlelakpglrvqlieaapkl........pfnntygvweddlsdlg..ladlvehrWsdayeyrfdeearklkraYgsvdraqlkeellqkleea...vlwleakaikvead 112
                 ++G+G Ag  +A+ l     rv+l ea++++        +++ t  +  d+l+  +  l +    + + + + ++ +++   ++  g ++r  l +++  k+ee+   +++   ka++v  d
  MMETSP1061-20121228|6422_1 474 IVGCGIAGATLAAGLDPEKYRVRLFEASHQVreqgyglaIWPSTMKILRDELQIEDldLRKSSTMTLRSVDQKLEMKSP-ATSQDKGFMKRSTLLKNIIAKVEERhpeSIYTGHKALRVRFD 594
                 8*************************98874122222223455555555554433311333333333333333333222.223334455666666555555555444456666666666665 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.019
   TIGR01790 260 eqkvvavGaaAglvHPatgYsvaralseApklaaaiaqa.lalsselataawkslwree 317
                 +++ v +G aA    P+t  +   a+++A  la+ + +   +ls+e++ + w+++ r++
  MMETSP1061-20121228|6422_1 751 QPNAVLIGDAAHAYGPLTAKMANLAINDAHCLATLLNHHqDDLSQEEILNEWQKIQRPK 809
                 5668999***************************9954313556677777777776655 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.9e-05    0.0077       3      88 ..     473     559 ..     471     588 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.9e-05
   TIGR03197   3 avIGaGiAgaalalsLarrGvqvtllekdeklaqgASgnrqGalypllsaddnalsrf.llaaflyarrlleqlaeagvefdhelcg 88 
                  ++G GiAga+la  L     +v l+e+++++ +++ g ++     ++ +d+ +++ + l+++ ++++r ++q  e +++ + + +g
  MMETSP1061-20121228|6422_1 473 DIVGCGIAGATLAAGLDPEKYRVRLFEASHQVREQGYGLAIWPSTMKILRDELQIEDLdLRKSSTMTLRSVDQKLEMKSPATSQDKG 559
                 59****************************999888777666666666666666666534455566666666665555555555555 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.7e-05     0.019       1      33 [.     472     504 ..     472     507 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.7e-05
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrql 33 
                 v +vG G+AG + A+ L  + +rv+l+Ea++q+
  MMETSP1061-20121228|6422_1 472 VDIVGCGIAGATLAAGLDPEKYRVRLFEASHQV 504
                 679***************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.53u 0.14s 00:00:00.67 Elapsed: 00:00:00.49
# Mc/sec: 2281.53
//
Query:       MMETSP1061-20121228|6427_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 1517.87
//
Query:       MMETSP1061-20121228|6426_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 842.22
//
Query:       MMETSP1061-20121228|6429_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1141.71
//
Query:       MMETSP1061-20121228|6430_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 798.22
//
Query:       MMETSP1061-20121228|6432_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1837.69
//
Query:       MMETSP1061-20121228|6433_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                      217  (0.052901); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.44
# Mc/sec: 1982.84
//
Query:       MMETSP1061-20121228|6431_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2536.08
//
Query:       MMETSP1061-20121228|6428_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 2172.74
//
Query:       MMETSP1061-20121228|6436_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.34
# Mc/sec: 252.33
//
Query:       MMETSP1061-20121228|6434_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 2021.83
//
Query:       MMETSP1061-20121228|6439_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1331.89
//
Query:       MMETSP1061-20121228|6437_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 867.36
//
Query:       MMETSP1061-20121228|6442_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 2016.96
//
Query:       MMETSP1061-20121228|6443_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 2123.30
//
Query:       MMETSP1061-20121228|6447_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.57    7.9   7.2       0.51    8.1   5.0    1.2  1  TIGR00986 3a0801s05tom22: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR00986  3a0801s05tom22: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   5.0   0.00013      0.51      24      49 ..       3      28 ..       1      49 [. 0.91

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00013
   TIGR00986 24 eedaedqedvdeedssdsDfeddeee 49
                +e++e+ +d d++d+++ D++d e e
  MMETSP1061-20121228|6447_1  3 DESDENDNDDDDDDDVENDYDDVESE 28
                7899999999************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 323.97
//
Query:       MMETSP1061-20121228|6444_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1170.69
//
Query:       MMETSP1061-20121228|6448_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 575.95
//
Query:       MMETSP1061-20121228|6445_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-88  295.4   4.0    4.1e-75  250.8   0.1    2.2  2  TIGR03674 fen_arch: flap structure-specific endonuclease
    3.1e-48  162.7   0.4      1e-24   84.8   0.1    2.1  2  TIGR00600 rad2: DNA excision repair protein (rad2)
    3.5e-14   49.9   4.5    3.1e-11   40.2   1.3    2.3  2  TIGR00593 pola: DNA polymerase I
  ------ inclusion threshold ------
       0.88    7.4   6.1       0.58    8.0   0.4    2.4  2  TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.8   0.1     4e-78   4.1e-75      11     265 ..      18     269 ..       1     280 [. 0.92
   2 !   45.5   0.6   1.1e-15   1.2e-12     271     338 .]     312     382 ..     291     382 .. 0.84

  Alignments for each domain:
  == domain 1    score: 250.8 bits;  conditional E-value: 4e-78
   TIGR03674  11 keeieledlsgkvvavDalNalYqfLssirq....edgtplkdskGritshlsGllyrtinllekgikpvyvFDGkppelKkeeleeRrevreeaeekleealekgdleeaakyakrsarldeeivedskkLlellgipyvqApsegEAqaaymvkkgdvdavgsqDYDsLlfGaprlvrnltisgkrklpkknvyvevkpElieLeevLkelgitreqLidiailvGTDynegvkgiGpkkalklikelgdlekvlke 265
                  +e+e+++l+g+ +a+Da  a+YqfL ++r     ++ + l++++G+ tsh++G++ rti++l +g+kpv+vFDGk+p++K+ ele+Rr++r++aee+l++a++++++ee++k +kr ar  ++  ed+k+Ll+l+g+p++ Ap e+EAqaa + k g+v a+g++D D+L f +p lvr+lt  ++ +          ++  ++ ++ ++ lg+t++q +d+ il+G Dy + +kgiGpk+alkli+e+g++ek+l  
  MMETSP1061-20121228|6445_1  18 IREVEFKSLHGRRIAIDASMAIYQFLIAVRSggpnQQAMMLTNADGETTSHIQGMFNRTIRFLTEGLKPVFVFDGKAPNMKSGELEKRRQKRRKAEEELKKATDEDNKEEMEKHSKRLARAGRKENEDCKRLLRLMGVPVILAPMEAEAQAAALCKAGKVYATGTEDMDALTFATPILVRKLTFANQSS-------KGAQIQTMNYKKAIEGLGLTHDQFVDLCILLGCDYCDTIKGIGPKTALKLIREHGSIEKILPV 269
                 689***************************6333368899*************************************************************************************************************************************************9633.......2356889****************************************************9865 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 1.1e-15
   TIGR03674 271 enldeirelFlnPpvtddYelelkkpdkekiieflveehdfseervekalerleka...kkskqktLdawf 338
                   +   r+lF n +v++d el++k+pd e++++flvee  f++erv+ ++e+l+ka   +++ q+++d++f
  MMETSP1061-20121228|6445_1 312 PAYVLARDLFHNHEVNTDVELKWKEPDAEELTKFLVEEAGFNPERVKVQIEKLKKAhaaNRKPQARMDSFF 382
                 3555679************************************************9887888899999997 PP

>> TIGR00600  rad2: DNA excision repair protein (rad2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   1.8e-25   1.9e-22       1     127 [.       1     141 [.       1     147 [. 0.83
   2 !   84.8   0.1     1e-27     1e-24     780    1033 ..     144     408 ..     121     417 .. 0.73

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 1.8e-25
   TIGR00600   1 mGVqglWkllec....sgrpvkletLegKilAvDiSiWlyqalKavRDkeGNa....ikn......sHlltlFrRlCKLLfFrirPvFVFDGdaPlLKrqTlakRrqRrdkasedarkTaeKLLklflkrqalklaenskk 127
                 mG++gl kll      s r+v+  +L g+++A+D+S+ +yq+l avR    N+    + n      sH+ ++F R  + L  +++PvFVFDG aP +K   l+kRrq+r ka+e+ +k ++   k  + + + +la  ++k
  MMETSP1061-20121228|6445_1   1 MGIKGLAKLLSDeapdSIREVEFKSLHGRRIAIDASMAIYQFLIAVRSGGPNQqammLTNadgettSHIQGMFNRTIRFLTEGLKPVFVFDGKAPNMKSGELEKRRQKRRKAEEELKKATDEDNKEEMEKHSKRLARAGRK 141
                 9********964223378*****************************76555422226553334447***************************************************99988888888888666666665 PP

  == domain 2    score: 84.8 bits;  conditional E-value: 1e-27
   TIGR00600  780 kEsqELLrlFGiPYivAPmEAEAqCakLdlldlvdGiiTDDSDvfLFGarkv.....YkNfFnknkfVEyYqyedikkqlgldrkklinLAyLLGSDYTeGlptvGpVsalEilnEFpG.dglepLlk....Fk..eWyqeaqkdkkvkenpndtkvkk.klkllqLtdeFPnplVa.eAYlkPvVDdskssFlWGkPDldklReFlkaqlGWsrektdEvLlPvlk..kkkakqtqlridsFFrlaqqekeaakviksqrlkRavtalk 1033
                   +++ LLrl G+P i APmEAEAq a L +  +v  + T+D D   F +  +     + N  +k   +   +y+   + lgl + ++++L  LLG DY + ++++Gp +al ++ E +  + + p++k    +   e +   qkd++   +++    +  k+k    t+  P  + a + +   +V  +    +W  PD ++l +Fl ++ G++ e+     +  lk  +   ++ q r+dsFF+   + + +ak++k    +Ra+  lk
  MMETSP1061-20121228|6445_1  144 EDCKRLLRLMGVPVILAPMEAEAQAAALCKAGKVYATGTEDMDALTFATPILvrkltFANQSSKGAQIQTMNYKKAIEGLGLTHDQFVDLCILLGCDYCDTIKGIGPKTALKLIREHGSiEKILPVVKdmpkYTvpESWIPDQKDENETTDEEGNDNDEtKEK---ETPATPAYVLArDLFHNHEVNTD-VELKWKEPDAEELTKFLVEEAGFNPERVKVQ-IEKLKkaHAANRKPQARMDSFFKVVSNPASDAKRKKRLEDERAKKKLK 408 
                  57999******************************************9855411112445556667899999999999***************************************9422222333311112222445555555554444433333330333...35666765555156666677665.679************************9755.55566366666778*********************9998888876554 PP

>> TIGR00593  pola: DNA polymerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   4.4e-05     0.045      20      84 ..      56     118 ..      32     125 .. 0.87
   2 !   40.2   1.3     3e-14   3.1e-11     149     322 ..     206     403 ..     166     420 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.4e-05
   TIGR00593  20 epLknskgeptnavyGfvkmllkllkeekpeyvvvafdsekktfRheayeeYKanRketpeelae 84 
                   L+n+ ge+t+ + G+++  +++l+e      v++fd +++++++ + e+ +++R+++ eel++
  MMETSP1061-20121228|6445_1  56 MMLTNADGETTSHIQGMFNRTIRFLTEGL--KPVFVFDGKAPNMKSGELEKRRQKRRKAEEELKK 118
                 579***************99999999876..45789**************************986 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 3e-14
   TIGR00593 149 kgktelteltaeavvekygvtpeqlvdlkaLvGDkSDnipGvkgiGeKtAakLLkefgslekiye.....................nlekikse.klkekLkeekedallskelat.ietdvplevdledlrlkeedreklve.lleelefks..lkkkleklesseaedka..eeeeeekelvakeeeekaeleevaekae 322
                 ++ +++++++ ++ +e  g+t +q+vdl  L G   D    +kgiG+KtA+kL++e+gs+eki+                      n e+  +e + +++ ke++  a+  + la+ + ++ ++++d+e l++ke+d e+l++ l+ee +f+   +k ++ekl++++a++++  +  ++ +++v+  ++++++ ++++++  
  MMETSP1061-20121228|6445_1 206 SKGAQIQTMNYKKAIEGLGLTHDQFVDLCILLG--CDYCDTIKGIGPKTALKLIREHGSIEKILPvvkdmpkytvpeswipdqkdeN-ETTDEEgNDNDETKEKETPATPAYVLARdLFHNHEVNTDVE-LKWKEPDAEELTKfLVEEAGFNPerVKVQIEKLKKAHAANRKpqARMDSFFKVVSNPASDAKRKKRLEDERA 403
                 556789999999********************9..4666667889*******************98999999999999877765431.22222102222222222333334444432555556666666.899**********88999999751144444555444444443332222223333333333333332222222 PP

>> TIGR01216  ATP_synt_epsi: ATP synthase F1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.4   0.00057      0.58      76     121 ..      89     134 ..      85     139 .. 0.79
   2 ?    1.7   0.4     0.053        54      80     109 ..     391     413 ..     356     420 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00057
   TIGR01216  76 iLadeavrakeideaeaeealeaaekklesaedkkdlaeakkklkk 121
                 ++  +a  +k  + ++ ++++++ae++l++a d+ +++e++k+ k+
  MMETSP1061-20121228|6445_1  89 VFDGKAPNMKSGELEKRRQKRRKAEEELKKATDEDNKEEMEKHSKR 134
                 556667777777889999**************99899988887665 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.053
   TIGR01216  80 eavrakeideaeaeealeaaekklesaedk 109
                 +a+r k ++ ++a+++l+aa       +d+
  MMETSP1061-20121228|6445_1 391 DAKRKKRLEDERAKKKLKAA-------NDR 413
                 44444444444444444444.......444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       327  (0.0797172); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.44
# Mc/sec: 1268.90
//
Query:       MMETSP1061-20121228|6449_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 899.93
//
Query:       MMETSP1061-20121228|6453_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-37  127.3   0.0    2.3e-36  123.4   0.0    2.3  1  TIGR00196 yjeF_cterm: YjeF homolog, C-terminus
     0.0089   12.9   0.0      0.015   12.2   0.0    1.2  1  TIGR03828 pfkB: 1-phosphofructokinase


Domain annotation for each model (and alignments):
>> TIGR00196  yjeF_cterm: YjeF homolog, C-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.4   0.0   1.1e-39   2.3e-36       8     272 ..     112     424 ..     107     429 .. 0.81

  Alignments for each domain:
  == domain 1    score: 123.4 bits;  conditional E-value: 1.1e-39
   TIGR00196   8 dkktlpkrrkksHKGqsGrvliigGsedyaGApllaalaAlraGadlvtvaaeenaitvikslsPellvreleeesigkkkvdedee................................llerldvvvlGpGlgrdes....ikkavekllelek.plvlDAdalkllaqss.....vkeekevilTPhpgEfkrllkaaekkgdrleaakeiaqklkavvllkgakdviaspd.....gdllinktgnaalakGGtGDvLaGligallaqk...........edafdaaiaaaflhgaagdlllkefgaygltaldlvetip 272
                  ++++ +  + s KG sGrv ++gGs  y+GAp+ aa a l+ Gadl    + e+a+  iks+sPel+v ++ +     + v   ++                                ++++++v+v+GpGlgr +     ++++++  +++ + plv+DAd+l+ll+  +      ++e +vilTP+  E krl       +d             + +++kga d i  +       +++i  + ++ +++GG GDvLaG  g l a +           e++  a  +a++    a +++++++  + +ta d+ + + 
  MMETSP1061-20121228|6453_1 112 MERCIVPLSASSYKGSSGRVGVLGGSARYTGAPYYAAMASLKCGADLAFCFCAEEAAIPIKSYSPELMVAPVYNAAKFDQAVRRRQKeddaasddydydsdteelveelveemveevcsIMDKMHVLVVGPGLGRCPLvlkaTARIIQRAQSYYRlPLVIDADGLFLLTLPEyretlLSNESPVILTPNAMELKRLSAGGHGTEDL---------PESCWIIEKGAVDSIRPASstfqtPPTMICGEQGGLKRSGGIGDVLAGTCGTLVAWNnilsgrgksspEELPLACWTACSFVKRATKVAFDKHR-RSMTAPDILQELG 424
                 6789999***************************************************************998666555555554446888999********************************************655555566666655548*************99999999999****************9955555555.........23578999999999965542343356778888888899****************9975555555433333344445566666667777777777.7777777766665 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.1e-06     0.015      98     191 ..     205     308 ..     183     319 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.1e-06
   TIGR03828  98 eetklnepGpeiseeeleallekleeqlkegdvlvlaGSlPrg.vpedlyaelikllrek.gakvilDtsgeaLlkvlkak........plliKPNkeEleell 191
                 + ++ +    e+ ee +e+++e++ + + + +vlv++  l r  +  ++ a++i+++++   +++++D++g  Ll+  +++        p+++ PN++El++l 
  MMETSP1061-20121228|6453_1 205 DDYDYDSDTEELVEELVEEMVEEVCSIMDKMHVLVVGPGLGRCpLVLKATARIIQRAQSYyRLPLVIDADGLFLLTLPEYRetllsnesPVILTPNAMELKRLS 308
                 5555556666777888999999999999999999999888875477889999****999889*************99999999999999***********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1909.44
//
Query:       MMETSP1061-20121228|6446_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-23   79.2   0.0    3.9e-12   43.2   0.0    3.7  4  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    4.1e-06   22.6  13.6    5.8e-06   22.1   9.4    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0001   18.0  12.4    0.00014   17.5   8.6    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        0.1   10.8  17.4      0.045   12.0   5.4    2.5  2  TIGR02473 flagell_FliJ: flagellar export protein FliJ
       0.44    7.3  12.5       0.73    6.5   8.7    1.3  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
          3    4.1  15.1        4.4    3.5  10.4    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   8.6      0.16   1.1e+02      25     118 ..       3     100 ..       1     102 [. 0.47
   2 !   42.5   0.0   9.5e-15   6.5e-12     177     266 ..     102     189 ..      99     207 .. 0.88
   3 !   43.2   0.0   5.7e-15   3.9e-12     168     267 ..     208     304 ..     195     321 .. 0.86
   4 ?   -4.5   2.2       1.7   1.1e+03      64     140 ..     398     472 ..     366     494 .. 0.46

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.16
   TIGR01642  25 RkRsrdrsrdRdRdrr.drrrsrrkdsRdRdrrrydsrsissleeds.....rrrSRdrirrrsrsssseskerrrsrkrsssnekk.kddkkrslwdvkp 118
                 R+R    +r RdR+   +r r r++ +R+ d  +y+ ++   l  +       + S d   r +++ + +    r+ r+rs+++ ++ k+++k+++ d++p
  MMETSP1061-20121228|6446_1   3 RRRYSTGQRGRDRNPTfQRARDRFERKRKTDTYEYNGNNNYTLTGNGrgydvGGGSSDS--RMDYD-DDGRGGGRQRRSRSPMRWERgKKQQKKTQTDIPP 100
                 44444444444444445666666666666666666666655555544222222222222..22222.2333445666777777766623445556667665 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 9.5e-15
   TIGR01642 177 RrlyvgniPpeakeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsiiyenvslkirRphdYiPvpe 266
                 R l+vgniP ++ ++ +  F+n  ++       +   + ++ +in+  +Faf+E+   e a ++l+++++ + n  +k++Rp+ Y  +  
  MMETSP1061-20121228|6446_1 102 RELFVGNIPSDIDDKFLLHFLNGAMRQAKLCARH-ETPCLSAQINS-GNFAFVEMVNAEYANKCLNINGVLFLNARIKVGRPKKYTGPFM 189
                 99************************99888777.56677889998.59************************************96554 PP

  == domain 3    score: 43.2 bits;  conditional E-value: 5.7e-15
   TIGR01642 168 veqqatrkaRrlyvgniPpeakeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsiiyenvslkirRphdYiPvpea 267
                 ++ + ++ +R l+vgn  pe++++ + dF+   +  vg       +  +++++    k+af+E+rt+ e+t+al+l+ i + n  l+i Rp  Y+   e 
  MMETSP1061-20121228|6446_1 208 LDGESEKVNRELFVGNTTPEMTDKMLKDFLGTAMGQVGLSIMDGNPITLCEMFG---KYAFIELRTPRETTNALNLNNIEFMNSKLQITRPAKYQGEFED 304
                 46778999*******************************998855556788885...7************************************976655 PP

  == domain 4    score: -4.5 bits;  conditional E-value: 1.7
   TIGR01642  64 ssleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkppkyeavtavqakasqvansvpg 140
                  s++++   + Rd+ +++s+++++++ +    r  ++  +kk+++ +  l  v  +   ++t+ + +  ++ +s+ +
  MMETSP1061-20121228|6446_1 398 LSEHKNELDQVRDQLKNNSQNVTRITVDMDS-RLEAEVLKKKHEETQGMLRGVTES-LLKATEKLQNERKARKSLEA 472
                 2222222444555555555555555444333.222333333333333333333333.23333333344444444444 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   9.4   8.5e-09   5.8e-06     345     477 ..     348     479 ..     332     505 .. 0.55

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 8.5e-09
   TIGR02168 345 eleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeq 477
                 +++ +k+el++++++le  +++lee ++++e+ +e+l +l+++ +e +++l+++++el +++++l++ +++++r + +  ++  ++e ++++ +e+q+ l  + e l +++e+l++ ++a ++le++++ea+ 
  MMETSP1061-20121228|6446_1 348 DIKVVKAELAQVRQALEITRHQLEECNKKSEARKEQLISLNKKWSEGKNELSEHKNELDQVRDQLKNNSQNVTRITVDMDSRL-EAEVLKKKHEETQGMLRGVTESLLKATEKLQNERKARKSLEAKFQEANF 479
                 34444555555555555555555555555555555555555555555555555555555555555555555554444444433.2333455555555555555555555555555555555555555555443 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   8.6   2.1e-07   0.00014     355     474 ..     351     476 ..     332     496 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.1e-07
   TIGR02169 355 klkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkael......erieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrk 474
                  +k+el++ ++ le  r++lee +k++++ +e+l +l++k ++ k+el e+k+eld+  ++lk+ ++++ ++  ++      e +++k++e +  l  + e + ka++kl++ ++ ++++e++ ++
  MMETSP1061-20121228|6446_1 351 VVKAELAQVRQALEITRHQLEECNKKSEARKEQLISLNKKWSEGKNELSEHKNELDQVRDQLKNNSQNVTRITVDMdsrleaEVLKKKHEETQGMLRGVTESLLKATEKLQNERKARKSLEAKFQE 476
                 467888888888888888999999998888888889999988888888888888888888888888888877666511111134455555555555555555555555555555555555555443 PP

>> TIGR02473  flagell_FliJ: flagellar export protein FliJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   1.5     0.029        19      16      50 ..     350     384 ..     343     391 .. 0.74
   2 ?   12.0   5.4   6.6e-05     0.045      18     101 ..     394     477 ..     388     481 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.029
   TIGR02473  16 eqakselakaqaeferleqqLqqlekereeyeqqa 50 
                 + +k ela++++++e  + qL++ +k+ e+  +q+
  MMETSP1061-20121228|6446_1 350 KVVKAELAQVRQALEITRHQLEECNKKSEARKEQL 384
                 45677888888888888888888888777776665 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 6.6e-05
   TIGR02473  18 akselakaqaeferleqqLqqlekereeyeqqanekvqsgtsaaelsnlqrfirqldeaieqqqqelaelekeleakrerllea 101
                  k+el++  +e++++++qL++++++  +++ ++ +++++ +  ++++++q+ +r   e + +++++l++ +k   +   + +ea
  MMETSP1061-20121228|6446_1 394 GKNELSEHKNELDQVRDQLKNNSQNVTRITVDMDSRLEAEVLKKKHEETQGMLRGVTESLLKATEKLQNERKARKSLEAKFQEA 477
                 5899**********************************************************9999999988776666666665 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   8.7    0.0011      0.73     159     270 ..     349     462 ..     337     470 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0011
   TIGR01843 159 leglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqele....qkfreev.seelreaqarlaeleeelskardrlqr 270
                 ++ ++a+l+++rq le+   +le     ++k   ++ +l++l+++  e ++el e++ el +++ +l++  ++++ ++    +++ +ev +++ +e+q  l +++e l ka+++lq+
  MMETSP1061-20121228|6446_1 349 IKVVKAELAQVRQALEITRHQLEE---CNKKSEARKEQLISLNKKWSEGKNELSEHKNELDQVRDQLKNNSQNVTRITvdmdSRLEAEVlKKKHEETQGMLRGVTESLLKATEKLQN 462
                 556777888888888888777765...5678889999************************99999999999988765111155556652456899*****************9997 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5  10.4    0.0065       4.4      46     169 ..     342     461 ..     323     485 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0065
   TIGR03319  46 eakkkealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekisgltqeeAkellleeveeelkeeaakli 169
                 e    e +  +k e+ ++r+ le      r++l++ +k+ + ++e+l + ++k ++ ++el+++++el++ + +l+++++++++++ + +++Le      ++e  + +l+ v e+l + + kl 
  MMETSP1061-20121228|6446_1 342 EPIDGEDIKVVKAELAQVRQALE----ITRHQLEECNKKSEARKEQLISLNKKWSEGKNELSEHKNELDQVRDQLKNNSQNVTRITVDMDSRLEAEVLKKKHEETQGMLRGVTESLLKATEKLQ 461
                 44455555555555555554444....3445555555555555555555555556666666666666666666666666666666666666666444333444444444444444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.13s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 2296.61
//
Query:       MMETSP1061-20121228|6455_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.6   0.0      0.019   12.4   0.0    1.0  1  TIGR04099 biosn_Pnap_2097: probable biosynthetic protein, Pnap_2097 family


Domain annotation for each model (and alignments):
>> TIGR04099  biosn_Pnap_2097: probable biosynthetic protein, Pnap_2097 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.6e-06     0.019      44     114 ..      17      87 ..      11     100 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.6e-06
   TIGR04099  44 gakvYAaftavslkdarldsvrendaleirselarvsrtrvvsrhrlsvrgrevaevellSaFvrreeegs 114
                  ++v  af   sl+ a  ++v e d l  +s++++v  t++v +  l  +gr va  + +  F+ r+ +g+
  MMETSP1061-20121228|6455_1  17 AREVALAFEYASLRAAYSERVFELDLLPPTSHMVQVRVTQTVGQVVLPDSGRVVALTRGARLFLDRADAGD 87 
                 5677889*************************************************999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 653.66
//
Query:       MMETSP1061-20121228|6456_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 683.51
//
Query:       MMETSP1061-20121228|6452_1  [L=1106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 3475.71
//
Query:       MMETSP1061-20121228|6457_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 646.75
//
Query:       MMETSP1061-20121228|6454_1  [L=1259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.15s 00:00:00.70 Elapsed: 00:00:00.41
# Mc/sec: 4053.03
//
Query:       MMETSP1061-20121228|6460_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 361.23
//
Query:       MMETSP1061-20121228|6461_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 410.63
//
Query:       MMETSP1061-20121228|6463_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|6464_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.54
# Mc/sec: 131.99
//
Query:       MMETSP1061-20121228|6466_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 430.40
//
Query:       MMETSP1061-20121228|6467_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.26
# Mc/sec: 340.13
//
Query:       MMETSP1061-20121228|6465_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 1033.16
//
Query:       MMETSP1061-20121228|6468_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.18
# Mc/sec: 960.59
//
Query:       MMETSP1061-20121228|6470_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   15.9   5.1       0.24    9.4   1.6    2.6  2  TIGR04073 exo_TIGR04073: putative exosortase-associated protein, TIGR04073 family
  ------ inclusion threshold ------
       0.49    7.5   4.0        0.9    6.6   2.8    1.6  1  TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component


Domain annotation for each model (and alignments):
>> TIGR04073  exo_TIGR04073: putative exosortase-associated protein, TIGR04073 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   1.6   0.00012      0.24      16      48 ..       3      35 ..       1      39 [. 0.67
   2 !    7.1   0.1   0.00059       1.2      30      47 ..      37      54 ..      33      58 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00012
   TIGR04073 16 gvlElpkqivlttqeegaaagvtvGllkGvgmt 48
                g++E  ++  +++  eg ++g+  G+++G++  
  MMETSP1061-20121228|6470_1  3 GFMEGFMEGFMEGFMEGFIEGFIEGFIEGFMEG 35
                566666677777777777777777777777654 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00059
   TIGR04073 30 eegaaagvtvGllkGvgm 47
                 eg+++g+  G+++G++ 
  MMETSP1061-20121228|6470_1 37 MEGPMEGFIEGFIEGIME 54
                578899999999999875 PP

>> TIGR01427  PTS_IIC_fructo: PTS system, Fru family, IIC component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   2.8   0.00044       0.9      91     125 ..       3      36 ..       1      59 [. 0.58

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00044
   TIGR01427  91 GllpGliaGllaseansGflGaiiaGflaayvvlv 125
                 G++ G++ G++      Gf+ + i Gf+ +++   
  MMETSP1061-20121228|6470_1   3 GFMEGFMEGFMEGF-MEGFIEGFIEGFIEGFMEGL 36 
                 55666666665433.36666666666666665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 423.75
//
Query:       MMETSP1061-20121228|6471_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 713.94
//
Query:       MMETSP1061-20121228|6472_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 1087.59
//
Query:       MMETSP1061-20121228|6475_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.3   3.0       0.01   13.5   2.1    1.1  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   2.1   2.4e-06      0.01     190     226 ..      44      80 ..      10      86 .] 0.70

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.4e-06
   TIGR03354 190 aealpadlasidaestlepelaplpaaqpapapqeqe 226
                 +++l+++ ++ + est +++++p+p++qp+p+pq+  
  MMETSP1061-20121228|6475_1  44 GQQLQQQQQQQPLESTRQSQPQPQPQPQPQPQPQPPV 80 
                 3455555566666677777777777777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 515.96
//
Query:       MMETSP1061-20121228|6473_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   13.4   1.2      0.012   12.7   0.2    1.7  2  TIGR01177 TIGR01177: TIGR01177 family protein


Domain annotation for each model (and alignments):
>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2     3e-06     0.012     185     205 ..     343     363 ..     340     368 .. 0.90
   2 ?   -2.0   0.0     0.093   3.8e+02      71     104 ..     413     446 ..     403     454 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3e-06
   TIGR01177 185 rvlDPfcGTGgilIEAgLlGi 205
                 +++DP+ G G++++EA+++ +
  MMETSP1061-20121228|6473_1 343 TLIDPMAGSGSFVLEACMMAA 363
                 689***************976 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.093
   TIGR01177  71 dfveeleasdldeksfavrvrklkkksvdkarle 104
                  + e+++  + d++ + +r+++++++ vd a++ 
  MMETSP1061-20121228|6473_1 413 RAREGIRRMKTDKRRIRIRANDIHPRAVDIAESS 446
                 566889999999999*********9999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2927.33
//
Query:       MMETSP1061-20121228|6469_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-120  400.6   0.0   2.1e-120  400.4   0.0    1.0  1  TIGR00414 serS: serine--tRNA ligase
    5.9e-10   36.5   1.2    8.4e-10   36.0   0.0    1.7  2  TIGR00418 thrS: threonine--tRNA ligase
     0.0011   15.7   0.7     0.0069   13.2   0.0    2.0  2  TIGR00408 proS_fam_I: proline--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  400.4   0.0  1.5e-123  2.1e-120      10     418 .]      15     455 ..       3     455 .. 0.91

  Alignments for each domain:
  == domain 1    score: 400.4 bits;  conditional E-value: 1.5e-123
   TIGR00414  10 nlelvkeklkarglsveidleklselddklkkllskieelqkkrnelske.igkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnlvaesvpvgkdee.dnl................evkkegekksfdfkpkdHvellekldlldferavkvagsrfvvlknkgaklerALinfmLdllekkgysevvvPvlvnkellsgtgqlpkfeedifkveded.........lyLiaTaEvplanlhaneileeeelpikyaavspcFRkEAGsaGkdtkGliRvHqFeKvElvkfvkp..eesaeeleeliedaekilkeLelPyrvvnlcsgdlgfsaakkyDlEvWlpaqnkYrEisScSnctdfQarrlkirykekkkkk......kkyvhtlNgtalavgRvlvailEnyqeedGkvevPevLrkyl 418
                 ++++ ++ +++r + ve  ++++++ d+k+++l+++ +e++k+ n+++ke i  kk+ k++  +   +e+k  +++++e+ea+l  + e+ +++l +i+n+v+++vp++++ee dnl                  +  +e    ++kp  H ell + ++++  r+++vag+r ++l+n+g+ l++A+in+ + +l+++gy++v++P  +nk+++ +++ql +f+e+++kv  +          +yLiaT+E+pl ++h++e++e+  lp++ya++s+cFRkEAGs Gkd +G++RvHqFeK+E++++v+   e s +e+ +++e a++++ +L+  yrvv l+s +l+ +a kkyDlE+W+p+q+ YrE++ScSnctd+Qar + +r+  kk+ k       +yvh+lN+t  a+gR ++++lE yq+edG + vPevLr+y+
  MMETSP1061-20121228|6469_1  15 DPAKYRKYMEQRFKPVEW-VDEVIAEDEKWRALTKEKDEMRKQVNKIQKEkITPKKKAKEN-CDAEIAEMKAVQQQIKEVEAKLPLVAENRDRLLNRIGNIVDPEVPISNNEEeDNLviclkpippegegilpAAQGKLEYTLPETKPLTHDELLWRIGGYEPTRGSNVAGHRAYFLTNAGVLLNQAIINYGIAFLSARGYNVVQPPFFMNKDVMASIAQLDDFDEQLYKVSGKTddpdgeskeKYLIATSEQPLCAYHKDEWVEKSALPLRYAGISTCFRKEAGSSGKDIRGIFRVHQFEKIEQFCLVDDdlEVSQAEHKRMLEAAKEFYDSLGFSYRVVCLVSDELNDAAIKKYDLEAWFPGQQAYRELVSCSNCTDYQARGVGTRCGGKKSTKgdlnarSSYVHMLNATLCATGRGICCLLETYQTEDGVI-VPEVLRPYM 455
                 566667777777776665.9999************************99725556666665.455589*****************************************98761566*******9999877643444444477889999**********************************************************************************9776688999999*****************************************************************8633789*************************************************************************877655545766679****************************99.********8 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.9      0.33   4.6e+02      46      81 ..      43      78 ..      22     106 .. 0.59
   2 !   36.0   0.0   6.1e-13   8.4e-10     194     350 ..     187     354 ..     175     389 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.33
   TIGR00418 46 lekiekelkelakkklpvaklsvs.leeakeafkvle 81
                 +++ ke  e++k++++++k++++ +++ake    +e
  MMETSP1061-20121228|6469_1 43 WRALTKEKDEMRKQVNKIQKEKITpKKKAKENCD-AE 78
                4556666666666666666666652334444444.33 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 6.1e-13
   TIGR00418 194 vlwlpkGalirklledfvrekllkrgyeevetPiladlelweisghldkykermfrfkeee.......ekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEk..sGe.LvGLkRvRgftldDaHifct..edQikeEiknalrliqkvlkklglseekve 350
                  + ++ G l+ + + ++    l+ rgy+ v+ P+ ++++ ++    ld + e+ ++++ +        ++++++        ++  k++      LPlr a +++++R+E+  sG+ + G+ Rv +f    +  ++   ++  + E k++l+ +++ +++lg+s   v 
  MMETSP1061-20121228|6469_1 187 YFLTNAGVLLNQAIINYGIAFLSARGYNVVQPPFFMNKDVMASIAQLDDFDEQLYKVSGKTddpdgesKEKYLIATSE-QPLCAYHKDEWVEKSALPLRYAGISTCFRKEAgsSGKdIRGIFRVHQFEKIEQFCLVDddLEVSQAEHKRMLEAAKEFYDSLGFSYRVVC 354
                 455799*************************************************98876667888745555555444.446888999999999****************64477559***********999999986778899*******************944444 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   1.0     0.066        90     374     416 ..      50      95 ..      27     115 .. 0.62
   2 !   13.2   0.0     5e-06    0.0069      56     190 ..     212     351 ..     175     381 .. 0.71

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.066
   TIGR00408 374 eekvkelleelkedl...fkkAkelveekvkeveeleeikqalnek 416
                 ++++++ +++++++    +kkAke  + +++e++ +++  ++++ k
  MMETSP1061-20121228|6469_1  50 KDEMRKQVNKIQKEKitpKKKAKENCDAEIAEMKAVQQQIKEVEAK 95 
                 3344444555544321115677777777777776665555555444 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 5e-06
   TIGR00408  56 eveevyfPllipeselekEkeHikGFepEvylitqaGkk...kLeeklalRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEk....khtrPllRtrEflfkEaHtlhataee.aeeevlkildlYkelieelLaiPvl 190
                 + + v+ P ++ +++++     ++ F++ +y +     +   + +e   l  tsE  l+ ++k        LPl++  i + fR E     k  r + R+  f   E   l  +  e ++ e +++l+  ke+++ +L+  + 
  MMETSP1061-20121228|6469_1 212 GYNVVQPPFFMNKDVMASI-AQLDDFDEQLYKVSGKTDDpdgESKE-KYLIATSEQPLCAYHKDEWVEKSALPLRYAGISTCFRKEAgssgKDIRGIFRVHQFEKIEQFCLVDDDLEvSQAEHKRMLEAAKEFYD-SLGFSYR 351
                 5555555555555555543.34666777777665443321102223.34668***********98888999***************75455778**********999998887765526778899*********9.8887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       327  (0.0797172); expected 82.0 (0.02)
Passed bias filter:                      206  (0.0502194); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.30
# Mc/sec: 2111.83
//
Query:       MMETSP1061-20121228|6477_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 708.57
//
Query:       MMETSP1061-20121228|6476_1  [L=756]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-149  497.0   0.2   2.3e-149  496.4   0.1    1.3  1  TIGR00591 phr2: deoxyribodipyrimidine photolyase
    2.2e-07   27.9   1.4    2.8e-06   24.3   0.1    2.1  2  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
    9.6e-07   25.8   0.0     0.0011   15.7   0.1    2.2  2  TIGR02765 crypto_DASH: cryptochrome, DASH family


Domain annotation for each model (and alignments):
>> TIGR00591  phr2: deoxyribodipyrimidine photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  496.4   0.1  1.7e-152  2.3e-149       6     453 .]     149     640 ..     145     640 .. 0.86

  Alignments for each domain:
  == domain 1    score: 496.4 bits;  conditional E-value: 1.7e-152
   TIGR00591   6 krirllsktekvkd.......ssegvvywmsrdqrvqdnwaliyaqelalkeklPlavvfclv.....d.........kfldatirhykfllkGlrevakelkeldipfhlllg.....sakevlpkfveekkaaavvtDfsplriikqwvee..vakalpk.dvplvqvdahnvvPvwaasdkleysartirgkikkllpeflt..e.....lpkvelkak............sslktaeavdweealaslkvdrevkevelakpGtkaglevleefiskrLklfeekrndPnk.dalsnlsPylhfGqlsaqrvalevkrarsaesesvdefleelivrreLadnfcfyn.esydslkglyeWakktLkdhakDkreylYsleqlekaktaDklWnaaqlelveeGkmhgflrmyWakkiLeWtksPeealeiaiyLndkyelDGrDPngyvgvmWsicGvhDrgwaerevfGkvrymnyagckrkfnvaeyveky 453
                 +r r+l +te v +       ++++vvywm+rd+r  dnw l+ aq++a++++lPl vv  l+     d         + l +t rh +fll Gl+ v+kelk++++p+ + +         +vl +++ ++ a+ vv+D + lr +++w e+   ++al +  vpl qvdahnvvPvw as k+e++art+r+k++kl++e l+  +     +p+                   + ++++a + ++ ++ l+ d +v+ v   kpGt ag++ +e+f +  L++f+  rndPn+    s lsP++ +G+ls   ++++ k++ +++++  d+f+ee  vrreL+dnf +y  + yd l++  +Wa+ +L+ h++D+rey+Y+l+++ek+kt+D+lWnaaql++v++GkmhgflrmyWakkiLeWt++P++al +a yLndky+lDGrDPng+ gv+Ws+ G hD+gw+ere+fGk+r+mny+gckrkf+v+++v ky
  MMETSP1061-20121228|6476_1 149 QRTRVLTETETVPKgkakkgkNENCVVYWMQRDVRTADNWGLLLAQHVAQANSLPLRVVHVLAappgdDdgsdtppplERLRTTERHGAFLLGGLKRVHKELKAKGVPLDVVHYtdtndPNPHVLGDYLGKHAASVVVCDTNVLRNPRRWNESpaLKDALDAlGVPLYQVDAHNVVPVWYASPKREVGARTLRSKLHKLVEECLQnkDykkglIPE-----FagndhleklsksMEHDANKAFEVDSHVQFLNWDDTVQSVIKEKPGTTAGMKKFEKFTETGLRHFSMLRNDPNQeGVCSSLSPWFNHGHLSFATCIRRLKKH-NRDAQGKDSFIEEGFVRRELSDNFLWYApDTYDTLDAGAQWAQDSLELHRHDPREYIYTLQEFEKGKTHDDLWNAAQLQVVRTGKMHGFLRMYWAKKILEWTSTPADALRYAQYLNDKYALDGRDPNGFCGVAWSVFGNHDMGWKEREIFGKIRFMNYNGCKRKFKVNQFVAKY 640
                 6777777766543211111103445************************************963333313332223333467899**********************99776542111123457789999********************87422445553328*************************************999833222222233.....245556888876556667889999*************************************************94578**********************87.7788889********************9789********************************************************************************************************************************************997 PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0084        11       2      24 ..     173     195 ..     172     212 .. 0.83
   2 !   24.3   0.1     2e-09   2.8e-06     197     354 ..     396     561 ..     360     601 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0084
   TIGR03556   2 lilfwhrrdlrlsdnlglaaarq 24 
                  +++w +rd+r +dn gl  a++
  MMETSP1061-20121228|6476_1 173 CVVYWMQRDVRTADNWGLLLAQH 195
                 589*************9987765 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 2e-09
   TIGR03556 197 ewdadl....ilepgeaaaeakleefvdkaieeyqeqrnfpaldgt.sqlsaalkfgvigirtvwqatlealeasrseearesirtwqqelawrefyqhalysfpeladgpyrek..fkefpwenne..ahfqawcegktgypivdaamrqlnetgwmhnrcrmiva 354
                 +wd+ +      +pg +a ++k+e+f++ ++++++  rn p ++g  s ls+ +  g ++  t  +  ++   +++ ++++ +    ++el+  +f  +a  ++ +l+ g+  ++   +    + +e    +q + +gkt   + +aa  q+ +tg mh   rm  a
  MMETSP1061-20121228|6476_1 396 NWDDTVqsviKEKPGTTAGMKKFEKFTETGLRHFSMLRNDPNQEGVcSSLSPWFNHGHLSFATCIRRLKKHNRDAQGKDSFIEEGFVRRELS-DNFLWYAPDTYDTLDAGAQWAQdsLELHRHDPREyiYTLQEFEKGKTHDDLWNAAQLQVVRTGKMHGFLRMYWA 561
                 5665431111457********************************5489*******************999999999999999999999998.689999999*****999864431133333333331134688999***********************9999766 PP

>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0002      0.27       2      80 ..     173     260 ..     172     288 .. 0.82
   2 !   15.7   0.1   8.1e-07    0.0011     190     349 ..     388     552 ..     343     561 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0002
   TIGR02765   2 vvlllfrndLRleDnellakasskee......elvpvyvfdarqikl...savaglaklGkarakFlaesvadLktsLkklGsdLlvr 80 
                  v++++++d+R  Dn  l  a++ ++      ++v v   ++   +        +  ++ + +  Fl+  ++ ++++Lk++G  L v 
  MMETSP1061-20121228|6476_1 173 CVVYWMQRDVRTADNWGLLLAQHVAQanslplRVVHVLAAPPGDDDGsdtPPPLERLRTTERHGAFLLGGLKRVHKELKAKGVPLDVV 260
                 69*************98877776666667999888888877766554222666788899999999****************9988665 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 8.1e-07
   TIGR02765 190 tleelveaeseedersslefkGGetsalarvkeyflskslksYketRngllgvdystklspwLalGcvsarqihealkrYekergendsty...wvifeLlWRdyfrflalkygdkl.....FrleGlrgkkaktkedekilekwkegttgyplvdanmreLaatGym 349
                   +++++ + +++ +s+++ k G t+++++ ++ f +++l+ +   Rn        + lspw   G +s  +   +lk+++++    ds     +v+ eL   d f ++a    d l     ++ + l+ ++ + +e+   l+++++g+t   l +a++ ++ +tG m
  MMETSP1061-20121228|6476_1 388 VDSHVQFLNWDDTVQSVIKEKPGTTAGMKKFEK-FTETGLRHFSMLRNDPNQEGVCSSLSPWFNHGHLSFATCIRRLKKHNRDAQGKDSFIeegFVRREL--SDNFLWYAPDTYDTLdagaqWAQDSLELHRHDPREYIYTLQEFEKGKTHDDLWNAAQLQVVRTGKM 552
                 344556666678999***************987.68999***************************************9998877777743122677777..588999999888888222223344444444555555559*************************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 2625.89
//
Query:       MMETSP1061-20121228|6474_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.25
# Mc/sec: 3257.49
//
Query:       MMETSP1061-20121228|6480_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-16   56.8   0.1    3.7e-16   56.7   0.1    1.0  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    1.3e-06   25.4   0.0    1.4e-06   25.3   0.0    1.0  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.1   1.8e-19   3.7e-16      16      86 ..       4      74 ..       1      75 [] 0.95

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 1.8e-19
   TIGR03181 16 elaaklseeelvelyremvltRrldekalalqRqGrlgtyapllGqEAaqvgsalalrkeDvlvpsYRdaa 86
                ++a + s+++l++l r+m++ R++d+   + qRqGr+++y  + G+E+++ g+a al+++Dv++ +YR+++
  MMETSP1061-20121228|6480_1  4 QYADTNSRNSLQRLLRHMLRLREMDSIFQNAQRQGRISFYLTCRGEEGIHFGAASALERQDVILGQYREQG 74
                67778899*************************************************************86 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   6.9e-10   1.4e-06       3      65 ..      13      74 ..      11      75 .] 0.93

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 6.9e-10
   TIGR03182  3 ellelyremlliRrfEekaaqlYkkgkigGfvHlyiGqEAvavgleaalkeddsvitsYRdHg 65
                +l +l+r+ml++R++++  +++  +g+i  f+  + G+E +  g+ +al+++d ++ +YR+ g
  MMETSP1061-20121228|6480_1 13 SLQRLLRHMLRLREMDSIFQNAQRQGRIS-FYLTCRGEEGIHFGAASALERQDVILGQYREQG 74
                67789**********************97.77799*************************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|6478_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 1050.17
//
Query:       MMETSP1061-20121228|6483_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.2   2.5      0.024   11.1   1.7    1.0  1  TIGR03686 pupylate_PafA: proteasome accessory factor PafA


Domain annotation for each model (and alignments):
>> TIGR03686  pupylate_PafA: proteasome accessory factor PafA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.7   5.9e-06     0.024     173     247 ..       8      81 ..       2     111 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.9e-06
   TIGR03686 173 dhvwegvssattrsrPiintrdePhadaeryrrlhvivGdsnmsetttllkvgstdlvlemiea.gvaledlelen 247
                 d  + + ++att +  ++ tr  P   a +  ++  +vGd+ ++  +t++ +g+t+ v+ ++ a  +a e ++ ++
  MMETSP1061-20121228|6483_1   8 DRTDTTATTATTTTTAMVRTRGTPGTTATT--QIGALVGDTTIAGEATTVAMGTTAGVMAIMVAeTMAAETMAAAE 81 
                 556667889***************998875..899********************999976554045555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       339  (0.0826426); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 694.38
//
Query:       MMETSP1061-20121228|6479_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-24   82.8   0.1      2e-12   45.2   0.0    2.2  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    9.8e-20   68.7   0.1    1.3e-09   36.1   0.1    2.4  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    7.6e-13   46.4   0.1    2.7e-08   31.8   0.1    3.1  3  TIGR01068 thioredoxin: thioredoxin
    0.00039   18.0   0.0     0.0007   17.1   0.0    1.4  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
    0.00072   17.0   0.0     0.0018   15.7   0.0    1.6  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   2.5e-12   2.1e-09       1      51 [.     149     199 ..     149     202 .. 0.91
   2 !   45.2   0.0   2.5e-15     2e-12      51     105 ..     222     278 ..     216     326 .. 0.92

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.5e-12
   TIGR01130   1 eevleltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkks 51 
                 eev+ l +++f+ ++ en+lv v F+A WC HC+ +aP +e  A+ + +++
  MMETSP1061-20121228|6479_1 149 EEVIRLDSKSFQYALDENNLVFVDFFASWCSHCRIFAPTWEVLAKVMYDAN 199
                 6899************************************99999887665 PP

  == domain 2    score: 45.2 bits;  conditional E-value: 2.5e-15
   TIGR01130  51 spkvklakvDateekelaqkygvsGyPtLkifrnge..sssdYnGpReaegivkylk 105
                 + +v++akvD+ +++ l+++++++ yPtL++f ng+     +Y+G R+   +v+ylk
  MMETSP1061-20121228|6479_1 222 DVPVVIAKVDCVDQAILCNEHDIRAYPTLRLFVNGKpfDGGEYQGHRTVLDMVQYLK 278
                 5689********************************98889**************98 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.1   1.6e-12   1.3e-09       4      47 ..     157     199 ..     154     203 .. 0.83
   2 !   30.0   0.0   1.3e-10     1e-07      49     102 ..     224     278 ..     214     281 .. 0.89

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 1.6e-12
   TIGR01126   4 enfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkee 47 
                 ++f+ ++  en+ v+v+f+a WC hC+ +aP++e lak + +++
  MMETSP1061-20121228|6479_1 157 KSFQYALD-ENNLVFVDFFASWCSHCRIFAPTWEVLAKVMYDAN 199
                 55665555.9***************************9876654 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.3e-10
   TIGR01126  49 kvkiakvdataekelaskfkvsgfPtlkffkkgkke.pvdyeGeReaeelvefve 102
                  v+iakvd+  +  l+++ +++++Ptl++f +gk     +y+G+R+  ++v++++
  MMETSP1061-20121228|6479_1 224 PVVIAKVDCVDQAILCNEHDIRAYPTLRLFVNGKPFdGGEYQGHRTVLDMVQYLK 278
                 699******************************9754789***********9986 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   3.3e-11   2.7e-08       3      42 ..     156     194 ..     154     201 .. 0.84
   2 !   10.6   0.0   0.00013       0.1      43      81 ..     221     259 ..     215     275 .. 0.88
   3 ?   -1.8   0.0      0.92   7.5e+02      21      57 ..     351     386 ..     347     389 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 3.3e-11
   TIGR01068   3 eenfeetvassdklvlvDfwAeWCgpCkmlaPvleelake 42 
                 +++f+ ++ ++ +lv vDf+A+WC  C+++aP+ e lak 
  MMETSP1061-20121228|6479_1 156 SKSFQYALDEN-NLVFVDFFASWCSHCRIFAPTWEVLAKV 194
                 67788888886.5********************9998865 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00013
   TIGR01068  43 leekvkvvKlnvdeeqeiaakygirsiPtlllfkngkev 81 
                 l   v ++K++  ++  + ++ +ir+ Ptl lf ngk  
  MMETSP1061-20121228|6479_1 221 LDVPVVIAKVDCVDQAILCNEHDIRAYPTLRLFVNGKPF 259
                 5566899*****************************976 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.92
   TIGR01068  21 fwAeWCgpCkmlaPvleelakeleekvkvvKlnvdee 57 
                 f+ +   p + laP + ++++e ++ ++++   vd e
  MMETSP1061-20121228|6479_1 351 FYIQAYSPVHDLAPHMTNCSHEIHH-LSFAPTGVDRE 386
                 777777899999*******988875.77777777765 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   8.5e-07    0.0007      23      76 ..     140     192 ..     113     196 .. 0.65

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 8.5e-07
   TIGR02738  23 elkaLlaeeesltaaqdekpvgrkvlledyklvlfyqstCpyChqfapvLkqls 76 
                  +++L ++ e+ + + d k  +++   ++  +v f+ s C++C+ fap+   l+
  MMETSP1061-20121228|6479_1 140 SIEELHENGEE-VIRLDSKSFQYALDENNLVFVDFFASWCSHCRIFAPTWEVLA 192
                 34444433333.3333444444556666666666**************987666 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.2e-06    0.0018      18      90 ..     117     193 ..     108     199 .. 0.64
   2 ?   -3.4   0.0       1.7   1.4e+03     103     122 ..     416     435 ..     409     438 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.2e-06
   TIGR00385  18 llkrnaegedikele..saligkpvpa...ekeaelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelak 90 
                 +++rn+   di+e+      + k +++   + e+ ++ +++ ++  +l + +lv ++++asWC+ Cr   p+ + lak
  MMETSP1061-20121228|6479_1 117 IAERNTAQTDIEEISlhDTAVTKSIEElheNGEEVIRLDSKSFQ-YALDENNLVFVDFFASWCSHCRIFAPTWEVLAK 193
                 56667766677665311333444443300033334444455555.5677889***************88888777776 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.7
   TIGR00385 103 esqkalkfLkelGnPyqlvl 122
                   ++ +k+++  Gn +q++ 
  MMETSP1061-20121228|6479_1 416 AYHHYIKLISTNGNSFQVLQ 435
                 55667899999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 1999.25
//
Query:       MMETSP1061-20121228|6486_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-15   55.2   0.7    3.5e-15   54.0   0.0    1.9  2  TIGR01044 rplV_bact: ribosomal protein L22
    1.2e-05   23.2   0.1    5.7e-05   21.0   0.1    2.1  1  TIGR01038 L22_arch: ribosomal protein L22


Domain annotation for each model (and alignments):
>> TIGR01044  rplV_bact: ribosomal protein L22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       0.3   6.2e+02      47      61 ..      94     108 ..      70     111 .. 0.53
   2 !   54.0   0.0   1.7e-18   3.5e-15       3     102 ..     179     278 ..     177     279 .. 0.97

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.3
   TIGR01044  47 lksaianaehnneld 61 
                  +s   n ++nn+ d
  MMETSP1061-20121228|6486_1  94 AESNNNNKNNNNGTD 108
                 244445555555555 PP

  == domain 2    score: 54.0 bits;  conditional E-value: 1.7e-18
   TIGR01044   3 artvrisprkarlvidlirGkevaealdiLeftpkkaaelvekvlksaianaehnneldadelvvakvfvdeGPtlkrirprakGrasrirkrtshitvv 102
                 ++ +r sp k  ++ +l  G   +eal  L+f++kk a+lv+kvlk     a+  ++l + +l va++f+ +   lkri+p  +Gr   ++++ shi vv
  MMETSP1061-20121228|6486_1 179 QQAIRHSPWKLNRICQLAAGLTLEEALTQLKFCDKKNADLVAKVLKRTSNLADIRDGLQISQLEVAECFATRSLMLKRIKPMGRGRHGIMHHKFSHIRVV 278
                 5789********************************************999***********************************************98 PP

>> TIGR01038  L22_arch: ribosomal protein L22
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   2.8e-08   5.7e-05      80     147 ..     213     281 ..     167     282 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 2.8e-08
   TIGR01038  80 vkaakailklLknaeanAeak.gLdvekLkiiHiqankgpvlrrympRAfGRatprnsstthielvvee 147
                 +k a  + k+Lk   + A+ + gL+  +L++    a ++ +l+r  p   GR   ++++ +hi +v++e
  MMETSP1061-20121228|6486_1 213 KKNADLVAKVLKRTSNLADIRdGLQISQLEVAECFATRSLMLKRIKPMGRGRHGIMHHKFSHIRVVLRE 281
                 689***************97549********************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1671.86
//
Query:       MMETSP1061-20121228|6485_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-16   56.8   0.5      5e-16   56.7   0.3    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.3   1.2e-19     5e-16       1      68 [.       1      65 [.       1      68 [] 0.96

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 1.2e-19
   TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekd 68
                +++ +Ktl ++++++d+ep++t+ ++K+ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ + 
  MMETSP1061-20121228|6485_1  1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKES 65
                8999*******************************...**************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 448.76
//
Query:       MMETSP1061-20121228|6487_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1853.85
//
Query:       MMETSP1061-20121228|6481_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 944.76
//
Query:       MMETSP1061-20121228|6484_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-68  228.4   5.0    1.9e-42  143.3   0.1    4.2  4  TIGR02350 prok_dnaK: chaperone protein DnaK
    4.9e-65  218.0   4.1    3.9e-38  129.1   0.3    4.1  3  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    1.9e-09   35.2   0.7    4.5e-07   27.4   0.0    2.6  3  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    2.3e-09   34.6   0.0      1e-07   29.2   0.0    2.3  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    1.2e-05   22.4   0.1      0.005   13.8   0.0    2.9  2  TIGR01174 ftsA: cell division protein FtsA
  ------ inclusion threshold ------
       0.02   12.8   0.4      0.054   11.4   0.2    1.8  1  TIGR01158 SUI1_rel: putative translation initiation factor SUI1


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   6.4e-06    0.0043       2      61 ..     149     217 ..     148     221 .. 0.72
   2 !   17.3   0.0   3.9e-07   0.00027      46      99 ..     221     275 ..     217     293 .. 0.76
   3 !  143.3   0.1   2.8e-45   1.9e-42      96     234 ..     319     459 ..     290     465 .. 0.87
   4 !   54.1   0.0   2.7e-18   1.8e-15     290     367 ..     594     672 ..     587     675 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 6.4e-06
   TIGR02350   2 iiGidLGttnsvvavleggepv.vianaeGa....rttPsvvafkkd....gerlvGelakrqavtnpe 61 
                 + GidLGttnsv++v   ++ v vi   e        +Psvv++ +      e+ vG  +k +++++p+
  MMETSP1061-20121228|6484_1 149 VAGIDLGTTNSVICVQRPSKGVgVIDCVEDPltnsPIVPSVVSVYDPqrdvAEIRVGPSSKTKTLLDPH 217
                 67**************99887658888887533335689**9975431111567788888888887776 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 3.9e-07
   TIGR02350  46 rlvGelakrqavtnpentivsikrliGrkleeveee..akkvpykvveaenevkve 99 
                  +vG++akr++ t p++t++++kr++Gr +++v+ +  +++v +++ e+ + v ++
  MMETSP1061-20121228|6484_1 221 VVVGHAAKRRIDTHPHHTLYNAKRVLGRPYNDVAVDelRREVEFRIEEEPQ-VDMN 275
                 68*****************************77655115677788776654.3333 PP

  == domain 3    score: 143.3 bits;  conditional E-value: 2.8e-45
   TIGR02350  96 vkvev.edkeytpeeisaeiLqklkkdaeaylG.ekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaee 234
                   ++v ed ++tp++++ ++++ l   a ++lG ++v++av++vPa f+  qr+ t +a k+aG+ v r+++ePtaaaLayGl k++  ekilv+d+GGGt+d+sil++++g  +v    Gd +LGG dfd +i + la++
  MMETSP1061-20121228|6484_1 319 SVFRVdEDTTLTPQQVGGHVVNFLMGLARDFLGhDNVRSAVLAVPAKFDAHQRKRTFEAFKLAGVTVARVLEEPTAAALAYGLHKKEGVEKILVYDFGGGTLDISILHVSEGYCDVMGSDGDDRLGGADFDVAIAHLLAQQ 459
                 34444157899**********************457**************************************************************************************************9998876 PP

  == domain 4    score: 54.1 bits;  conditional E-value: 2.7e-18
   TIGR02350 290 kltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaa 367
                 ++t  +f++ +++l++r+  p ++ ++d  l+++eide+++vGG+tr+P+++elv++ +   + n  ++Pd +va Gaa
  MMETSP1061-20121228|6484_1 594 EVTLGEFNSACQPLFDRSVVPATRLVEDLTLQKEEIDEIVMVGGTTRMPQIRELVRQAFPnAQVNTHIDPDVTVAYGAA 672
                 677889**************************************************99985899**************9 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.8e-08   1.2e-05       2     101 ..     150     277 ..     149     284 .. 0.62
   2 !  129.1   0.3   5.7e-41   3.9e-38     101     235 ..     325     461 ..     296     473 .. 0.90
   3 !   57.4   0.0   2.9e-19     2e-16     278     357 ..     593     673 ..     572     676 .] 0.92

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.8e-08
   TIGR01991   2 vGiDlGttnslvaavregk....aevlkde.egrvllpsvvr.ylee......................gkvevGkeakeaaaedpkntiisvkRlmGrsledvk..keaeelpyeledakgemvrlkta 101
                  GiDlGttns++ + r +k    + +++d  +++ ++psvv+ y  +                       +v vG++ak+++ ++p++t+  +kR++Gr  +dv   + ++e  +++e++++  v ++ +
  MMETSP1061-20121228|6484_1 150 AGIDLGTTNSVICVQRPSKgvgvIDCVEDPlTNSPIVPSVVSvYDPQrdvaeirvgpssktktlldphpTRVVVGHAAKRRIDTHPHHTLYNAKRVLGRPYNDVAvdELRREVEFRIEEEPQ--VDMNNN 277
                 69999999999998864431111556666524567899999734332112112221111111222222235789****************************98511556667777777665..555554 PP

  == domain 2    score: 129.1 bits;  conditional E-value: 5.7e-41
   TIGR01991 101 aqgevtPvevsaeiLkklkkraeealgke.lkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklilkkag 235
                 ++ ++tP +v  ++++ l   a++ lg++ ++ av+ vPA Fd  qr+ t +A +lag+ v R+l+ePtaAA+AYGl k +  + ++vYD GGGt D+siL++++G  +v+++ Gd  LGG DfD a+a+l+ +++ 
  MMETSP1061-20121228|6484_1 325 EDTTLTPQQVGGHVVNFLMGLARDFLGHDnVRSAVLAVPAKFDAHQRKRTFEAFKLAGVTVARVLEEPTAAALAYGLHKkEGVEKILVYDFGGGTLDISILHVSEGYCDVMGSDGDDRLGGADFDVAIAHLLAQQHS 461
                 45599*********************977699*********************************************9944456789*******************************************9998765 PP

  == domain 3    score: 57.4 bits;  conditional E-value: 2.9e-19
   TIGR01991 278 aklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkk.epltdldPdevvAlGAal 357
                  +++  e+++  ++l ++++ + +r+++d  l++eei+e+v+vGG+tr+p++r+ v++ F + ++ t++dPd  vA GAa 
  MMETSP1061-20121228|6484_1 593 LEVTLGEFNSACQPLFDRSVVPATRLVEDLTLQKEEIDEIVMVGGTTRMPQIRELVRQAFPNaQVNTHIDPDVTVAYGAAS 673
                 567889******************************************************76156689***********95 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.1      0.98   6.7e+02       1      13 [.     151     163 ..     151     174 .. 0.84
   2 !   27.4   0.0   6.6e-10   4.5e-07      60     128 ..     354     428 ..     334     468 .. 0.74
   3 !    5.3   0.0    0.0036       2.5     189     224 ..     623     659 ..     610     673 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.98
   TIGR02529   1 GvdlGtanivivv 13 
                 G+dlGt+n vi v
  MMETSP1061-20121228|6484_1 151 GIDLGTTNSVICV 163
                 89******99987 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 6.6e-10
   TIGR02529  60 eltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlql..knga....vvdvGGGttGisilkkG 128
                 ++  a  avP     ++ k + +    aG+ v +vl+ePtaaa +  l  k+g+    v d GGGt  isil+  
  MMETSP1061-20121228|6484_1 354 NVRSAVLAVPAKFDAHQRKRTFEAFKLAGVTVARVLEEPTAAALAYGLhkKEGVekilVYDFGGGTLDISILHVS 428
                 4667899***********************************987665224554444489***********9743 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.0036
   TIGR02529 189 hiekqkvkdlylvGGassfsefedvfekel.glevik 224
                  ++k +++++ +vGG++ ++++++++++ + + +v +
  MMETSP1061-20121228|6484_1 623 TLQKEEIDEIVMVGGTTRMPQIRELVRQAFpNAQVNT 659
                 478999********************99986556554 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.014       9.6       6      20 ..     151     165 ..     147     224 .. 0.78
   2 !   29.2   0.0   1.5e-10     1e-07     100     203 ..     357     466 ..     299     502 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.014
   TIGR00904   6 gidlGtantlvyvkg 20 
                 gidlGt+n ++ v++
  MMETSP1061-20121228|6484_1 151 GIDLGTTNSVICVQR 165
                 8**********9974 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 1.5e-10
   TIGR00904 100 kvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveeptgsm.vvdiGGGttevavislg.G...ivvsk.sirvaGdeldeaiikyirrkynlliGe 203
                 + +++vP+   + +r+   e+ k aG   + ++eep aaa+  +l  +e + ++ v d GGGt +++++ ++ G   ++ s    r++G ++d ai + + +++ +++ +
  MMETSP1061-20121228|6484_1 357 SAVLAVPAKFDAHQRKRTFEAFKLAGVTVARVLEEPTAAALAYGLHKKEGVEKIlVYDFGGGTLDISILHVSeGycdVMGSDgDDRLGGADFDVAIAHLLAQQHSSVLEN 466
                 47899********************************************99875267***********98753322233343257************9999999988765 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0041       2.8     165     213 ..     376     425 ..     367     434 .. 0.89
   2 !   13.8   0.0   7.3e-06     0.005     221     343 ..     506     658 ..     500     667 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0041
   TIGR01174 165 kaveraglevdnivlsslAsakav.LtedEkelGvvlidiGggttdiavy 213
                 +a++ ag+ v +++ ++ A+a a  L + E    +++ d+Gggt di++ 
  MMETSP1061-20121228|6484_1 376 EAFKLAGVTVARVLEEPTAAALAYgLHKKEGVEKILVYDFGGGTLDISIL 425
                 678999***************99659999999999************985 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 7.3e-06
   TIGR01174 221 tkvlpiggnnvtkDlakalktplee.AEkiKikygsalieleseeesveipsvgeree..........relskkelaeiieaRveEileivk..................qkelkksglkeelaagivltGGaaqlkgikelaekvfdkk.vr 343
                  +vl  + +++t Dl      ++++  Ek+Ki  ++  +e+++++ +v+ +s+  r++          +e+ +   ++  e+ + E+le+                    ++ +++ +l++e +  iv+ GG++++  i+el ++ f +  v 
  MMETSP1061-20121228|6484_1 506 AEVLASACHRITDDLPLCSVSSFHTlGEKVKISLSEQQYEQQESNGTVDAESITARAKclalppvsqsQEFGSVPPKALCESLYVETLEVTLgefnsacqplfdrsvvpaTRLVEDLTLQKEEIDEIVMVGGTTRMPQIRELVRQAFPNAqVN 658
                 678999999999999987777766537999999999999999999999999998654411111000003333333455677778888887768999999999999999988888888885555555********************9876565 PP

>> TIGR01158  SUI1_rel: putative translation initiation factor SUI1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   7.9e-05     0.054      20      63 ..      65     110 ..      28     119 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.9e-05
   TIGR01158  20 rpkedqvvrirrekkGRkGkevtiieGldl..sdidlkelakeLKs 63 
                  ++++ + r+rrek+ + G    ii+Gl++  ++ + k+ +k+LK+
  MMETSP1061-20121228|6484_1  65 TSTKKATKRVRREKRDKIGEYTIIISGLPKepKKKKKKKTSKALKK 110
                 45777888********************872246677788999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.47
# Mc/sec: 1898.40
//
Query:       MMETSP1061-20121228|6492_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 448.76
//
Query:       MMETSP1061-20121228|6489_1  [L=1085]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1085 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.38
# Mc/sec: 3768.64
//
Query:       MMETSP1061-20121228|6491_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-05   21.1   1.8    0.00054   17.9   0.2    2.5  2  TIGR00040 yfcE: phosphodiesterase, MJ0936 family


Domain annotation for each model (and alignments):
>> TIGR00040  yfcE: phosphodiesterase, MJ0936 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.2   1.3e-07   0.00054       2      78 ..      82     171 ..      81     209 .. 0.80
   2 ?    1.9   0.0     0.011        46      96     136 ..     342     383 ..     320     400 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.3e-07
   TIGR00040   2 kilvlsDtHiperatelpvellkklsevdlvvhaGdlt........................sakvlkefedlaekviavrGnnDgekeelpeeeiieaea 78 
                 +++++sDtH + r        lk+l + d++vhaGd+t                        + + +++ + l  ++i+++Gn+D     + +    ++++
  MMETSP1061-20121228|6491_1  82 RFVFISDTHANHR-------HLKHLPSGDVLVHAGDFTksgetgsiedlalyfrdhslreqsDIRHTDKPSSLFREIICIAGNHDI----TLDRDYYQQNW 171
                 7899*******98.......46777799********************************9888889999999999*********3....33333334444 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.011
   TIGR00040  96 eslealakeldvDvlifGHtHepvaeeleg.illlNPGsltg 136
                   l++++  ++  v +fGH He +    +g  + +N  s+++
  MMETSP1061-20121228|6491_1 342 DLLKVVQDRVKPSVHVFGHIHEGHGVSFDGtTIYVNASSCSQ 383
                 567777788888999******987655544134677777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 2561.57
//
Query:       MMETSP1061-20121228|6488_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1979.84
//
Query:       MMETSP1061-20121228|6495_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0056   14.1   0.3      0.006   14.0   0.2    1.0  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   1.5e-06     0.006      17      70 ..       5      58 ..       1      63 [. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.5e-06
   TIGR00385 17 lllkrnaegedikelesaligkpvpaekeaelkekvqlltaevlkkgklvLlnv 70
                 + ++n++ ++ ++l sal g ++ +e+  e ++++q++ + + ++ +l L+ v
  MMETSP1061-20121228|6495_1  5 QQQQQNQQNQQLSKLRSALGGSDIKEERSLEGRDNSQTMATPLEPQRDLSLVFV 58
                56789999******************************9999999989888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|6493_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1640.44
//
Query:       MMETSP1061-20121228|6496_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.5   0.0        1.2    5.5   0.0    2.1  2  TIGR04004 WcaM: colanic acid biosynthesis protein WcaM


Domain annotation for each model (and alignments):
>> TIGR04004  WcaM: colanic acid biosynthesis protein WcaM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0   0.00028       1.2     309     354 ..     246     290 ..     232     299 .. 0.85
   2 ?    3.7   0.0     0.001       4.3     162     196 ..     455     489 ..     434     500 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00028
   TIGR04004 309 didmvnsagmligygvikgkylsipqnfklndirldnrklayklrg 354
                  ++m+    +++g gv    y+s+p   k +  ++ +r+l+y lr 
  MMETSP1061-20121228|6496_1 246 RMQMIAPNAVIVG-GVCGEGYVSMPTYTKAELCHMSERQLQYALRR 290
                 5678887777777.999999************************96 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.001
   TIGR04004 162 vsdanyailrqgfhnqldgaritnsrfsdlqgdai 196
                  +   +ailr+gf  +++++r ++  f  l+g a 
  MMETSP1061-20121228|6496_1 455 ETLGVFAILRDGFEGEMESVRGAEVDFFCLRGKAC 489
                 455679**********************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 2631.27
//
Query:       MMETSP1061-20121228|6497_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1619.07
//
Query:       MMETSP1061-20121228|6499_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-38  131.1   0.8    1.5e-38  130.7   0.5    1.1  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin
    2.7e-27   93.6   0.0    4.2e-27   92.9   0.0    1.3  1  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.7   0.5   7.2e-42   1.5e-38       6     291 ..     253     538 ..     248     559 .. 0.79

  Alignments for each domain:
  == domain 1    score: 130.7 bits;  conditional E-value: 7.2e-42
   TIGR03921   6 awkls..tGagvtVAViDtGvd.rhPrLpgev.aGgDlve..sgdgeddcdghGTlvAglIAarpaegsGfvGvAPdakilpirqtskafedkeeksavgdletlAkairrAadsgAkVINiSevaclsaksaadeselgaAvky..alekdvvvvAaagnegqdgsktvvyPAaypgVlaVgsidrsgepssfslag.pwvdvaApgenlvslspggdglasavgespleGtSfAaplVsgvAaLvrskfpe....ltaaqvirrleaTarkpar.....grddsvGaGvvdpvaAlteevap 291
                 +w+    +G+gv++  +DtGv+ +h + ++   +G    e  s +  +d +ghGT ++g I a++ ++ G+vG+AP+a+   +r+ +++ e    + ++   + l +a     d+gA+ IN S         +++ +++++A  +   +e ++v vAaagn+g +     +yPAay+gVl+Vg+ dr+ e+++fs +  + +dv Apg ++ s+  +++++a       ++GtS+A p + g+ aL+ s   +     +a+++++ l++T+ ++        ++ s  +Gv+d+ aA+   v +
  MMETSP1061-20121228|6499_1 253 IWNKYdvKGKGVKICMLDTGVQaSHEDFRESYlDGYYGSEfvSPHWYEDAAGHGTHITGTIVASN-NTVGIVGIAPEAETFVVRVFDDRREFYGFAGGTAYSTDLIAAASICKDRGAHLINASLG-------GSKYNAVEEAFFEqlFYEHGIVTVAAAGNQGTSK---SMYPAAYDGVLSVGASDREFEKAQFSNWNsETTDVLAPGVDIFSTFRDNSYAA-------FSGTSMAVPHATGALALMLSFVLKtrmtSSAEDLVHALKQTTVAADGgepsnDSSSSPSMGVIDAEAAIRYLVSD 538
                 56544459*********************9998665555554555667***********999985.89*********************997777777777778888888899*********774.......556666666654436889***********76655...56************************97616789**********666665444.......56***************87765554444899*********98766554332233445679********9876444 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   2.1e-30   4.2e-27       1     239 [.     305     550 ..     305     611 .. 0.83

  Alignments for each domain:
  == domain 1    score: 92.9 bits;  conditional E-value: 2.1e-30
   TIGR03895   1 hatevasvifgqees.svegiapkcrgliiPifaddk.....taekisqldlaraielAveagaaiinisagqltdtgeaeellekavklcqenniLivaaaGndgceClhvPaalpsvlavGAmdadGrplefsnwGeaykeqGilApGenilgakpggetvrksGtslAtavvtgvaalLlslqlkrgekpdpeavrtallesAlpCdpea..deeveRvlaGklnikgalelltgekeseeav....l 239
                 h+t+++ +i+  +++ ++ giap+ +++++ +f d +     +  ++  +dl  a ++  ++ga++in s g    ++  e ++e+   l  e+ i+ vaaaGn+g+     Paa  +vl+vGA d + +  +fsnw    ++  +lApG +i ++   +     sGts+A +  tg  al+ls  lk+  +  +e++ +al ++ ++ d  +  ++  +   +G ++ ++a+++l +++ ++e+     +
  MMETSP1061-20121228|6499_1 305 HGTHITGTIVASNNTvGIVGIAPEAETFVVRVFDDRRefygfAGGTAYSTDLIAAASICKDRGAHLINASLGGSKYNAVEEAFFEQ---LFYEHGIVTVAAAGNQGTSKSMYPAAYDGVLSVGASDREFEKAQFSNWNS--ETTDVLAPGVDIFSTFRDNSYAAFSGTSMAVPHATGALALMLSFVLKTRMTSSAEDLVHALKQTTVAADGGEpsNDSSSSPSMGVIDAEAAIRYLVSDRAAAETRlfplS 550
                 9******999887762678****************99999988888999************************9999999999996...6789********************************************76..5678************************************************************9998864411344456679**********99977666665533331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 2814.35
//
Query:       MMETSP1061-20121228|6505_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2122.82
//
Query:       MMETSP1061-20121228|6502_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1505.65
//
Query:       MMETSP1061-20121228|6509_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-37  125.3   0.2    4.8e-37  125.2   0.2    1.0  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    1.3e-18   65.0   0.0    1.4e-18   64.9   0.0    1.0  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    2.9e-14   50.4   1.8    6.1e-13   46.1   1.3    2.0  1  TIGR00485 EF-Tu: translation elongation factor Tu
    1.4e-08   31.1   0.0    1.8e-08   30.8   0.0    1.0  1  TIGR00484 EF-G: translation elongation factor G
    1.7e-08   31.1   0.1    7.2e-08   29.1   0.1    1.7  1  TIGR01393 lepA: GTP-binding protein LepA
    9.6e-08   28.5   0.0    1.5e-07   27.8   0.0    1.3  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    2.6e-06   24.3   0.7    1.3e-05   21.9   0.5    2.0  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    2.7e-06   25.1   0.5    2.1e-05   22.2   0.3    1.9  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00013   18.0   0.0    0.00027   17.0   0.0    1.5  1  TIGR00490 aEF-2: translation elongation factor aEF-2
    0.00044   16.6   0.0    0.00051   16.4   0.0    1.0  1  TIGR00503 prfC: peptide chain release factor 3
      0.004   14.2   0.4      0.005   13.9   0.3    1.2  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.2   1.3e-39   4.8e-37      11     102 ..       2      93 ..       1      94 [] 0.98

  Alignments for each domain:
  == domain 1    score: 125.2 bits;  conditional E-value: 1.3e-39
   TIGR00483  11 afighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknm 102
                 ++ ghvd+gkst+ g+l+++ g+i++r ++kl+  aeekgk+sf fay ld  keerergvti+   k f t+ky+ tivdapgh+d+iknm
  MMETSP1061-20121228|6509_1   2 VVCGHVDAGKSTTCGHLIFKQGGISQREMDKLQATAEEKGKSSFGFAYYLDTCKEERERGVTIQCNTKEFFTEKYHYTIVDAPGHKDYIKNM 93 
                 689****************************************************************************************9 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.9   0.0   3.9e-21   1.4e-18       4      97 ..       2      93 ..       1      94 [] 0.97

  Alignments for each domain:
  == domain 1    score: 64.9 bits;  conditional E-value: 3.9e-21
   TIGR02034  4 ltcGsvddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnm 97
                + cG vd Gkst  G l++    i++ ++ +l+ ++++kg++     +a  +d  + ere+g+ti    + f t+k ++ + d+PGh+ y +nm
  MMETSP1061-20121228|6509_1  2 VVCGHVDAGKSTTCGHLIFKQGGISQREMDKLQATAEEKGKSS--FGFAYYLDTCKEERERGVTIQCNTKEFFTEKYHYTIVDAPGHKDYIKNM 93
                68*************************************9987..99**********************************************9 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   1.3   1.6e-15   6.1e-13      35      92 ..      36      93 ..       2      94 .] 0.70

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1.6e-15
   TIGR00485 35 vlakegkaaakkydeidkapeekargitintahveyetekrhyahvdcpghadyvknm 92
                +  ++gk+++     +d++ ee++rg+ti++ + e+ tek hy+ vd pgh dy+knm
  MMETSP1061-20121228|6509_1 36 TAEEKGKSSFGFAYYLDTCKEERERGVTIQCNTKEFFTEKYHYTIVDAPGHKDYIKNM 93
                2334444444444579*****************************************9 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0     5e-11   1.8e-08      16      88 ..       4      89 ..       2      93 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 5e-11
   TIGR00484 16 sahidaGktttterilfytgki.....hkigevh..dGaat......mdwmeqekerGititsaattvewkdfrinlidtPGhvdf 88
                  h+daGk+tt   ++f  g i      k++ +    G++       +d  + e+erG+ti   + + + ++++  ++d+PGh d+
  MMETSP1061-20121228|6509_1  4 CGHVDAGKSTTCGHLIFKQGGIsqremDKLQATAeeKGKSSfgfayyLDTCKEERERGVTIQCNTKEFFTEKYHYTIVDAPGHKDY 89
                67***************988652211135554444445543222223899**************999999**************98 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   1.9e-10   7.2e-08       8      83 ..       3      89 ..       1      93 [. 0.76

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.9e-10
   TIGR01393  8 iiahidhGkstladrllektkavserelke.q...............lldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdf 83
                +  h+d Gkst +  l+ k + +s+re+ + q               +ld+   ererG+ti+ ++ ++ +     e+y+  ++d+PGh d+
  MMETSP1061-20121228|6509_1  3 VCGHVDAGKSTTCGHLIFKQGGISQREMDKlQataeekgkssfgfayYLDTCKEERERGVTIQCNTKEF-F----TEKYHYTIVDAPGHKDY 89
                568***********************99642222222233333333379*************9987554.3....478************98 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   4.1e-10   1.5e-07       6      77 ..       3      89 ..       1      92 [. 0.71

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 4.1e-10
   TIGR01394  6 iiahvDhGkttlvDklL.kqsg....vlrekeeveer..........vmDsndlererGitilakntavkykdtkinivDtPGhaDf 77
                +  hvD Gk t   +l+ kq+g     +++ ++++e            +D+   ererG+ti + +     ++++  ivD+PGh D+
  MMETSP1061-20121228|6509_1  3 VCGHVDAGKSTTCGHLIfKQGGisqrEMDKLQATAEEkgkssfgfayYLDTCKEERERGVTIQCNTKEFFTEKYHYTIVDAPGHKDY 89
                568******9988887537766322212222222221122333333369************************************97 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.5   3.5e-08   1.3e-05      28      67 ..      54      93 ..       1      94 [] 0.91

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.5e-08
   TIGR00475 28 lPeEkKRGltiDlGyaylpledkvlgliDvPGHekflkna 67
                  eE+ RG+ti      +  e++  +++D+PGH+ ++kn+
  MMETSP1061-20121228|6509_1 54 CKEERERGVTIQCNTKEFFTEKYHYTIVDAPGHKDYIKNM 93
                45899**********************************9 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.3   5.6e-08   2.1e-05       7      66 ..       2      89 ..       1      94 [] 0.88

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 5.6e-08
   TIGR00231  7 vivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt................................ykvnllDTaGqedf 66
                v+ Ghvd+GKst+   l+++++ i+++    + d  ++  ee+Gk                                 y  +++D +G++d+
  MMETSP1061-20121228|6509_1  2 VVCGHVDAGKSTTCGHLIFKQGGISQR----EMDKLQATAEEKGKSsfgfayyldtckeerergvtiqcntkefftekYHYTIVDAPGHKDY 89
                789******************999999....44555555788998899999999999999999999*************************9 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   7.3e-07   0.00027      24      99 ..       3      89 ..       1      93 [. 0.68

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 7.3e-07
   TIGR00490 24 ivahidhgkttlsdnllagagmise.el......a........geqlfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdf 99
                ++ h+d gk+t    l+   g is+ e+      a        g   +ld  ++e+erg+ti+       +e+  ++y   ++d+pgh d+
  MMETSP1061-20121228|6509_1  3 VCGHVDAGKSTTCGHLIFKQGGISQrEMdklqatAeekgkssfGFAYYLDTCKEERERGVTIQCN----TKEFFTEKYHYTIVDAPGHKDY 89
                677888888888888877777776422211121111111111144579**************975....46788899999********998 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.4e-06   0.00051      16      94 ..       3      90 ..       1      93 [. 0.74

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.4e-06
   TIGR00503 16 iishpdaGkttltekvllyGnai........qeaGavkargsqrsak.sdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfs 94
                +  h daGk+t   ++++  + i        q +   k++ s   a   d  + e++rG++i +   +f  +     ++d+pGh+d+ 
  MMETSP1061-20121228|6509_1  3 VCGHVDAGKSTTCGHLIFKQGGIsqremdklQATAEEKGKSSFGFAYyLDTCKEERERGVTIQCNTKEFFTEKYHYTIVDAPGHKDYI 90
                56799****998888776554442111111145556677777776652588999***************99999999*********96 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.3   1.3e-05     0.005      10      98 ..       3      93 ..       1      94 [] 0.65

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-05
   TIGR03680 10 lvGhvDhGkttlvkaltGvwtdthseelkr..gisiklGyadaeikkc.eeceepeaytteekceecgsetellrkvsfvDaPGhetLmatm 98
                + GhvD Gk+t+   l  +     + e+ +  + +   G   + +    ++c+e+++  ++ +c++ +    ++ + ++vDaPGh   +  m
  MMETSP1061-20121228|6509_1  3 VCGHVDAGKSTTCGHLIFKQGGISQREMDKlqATAEEKGKSSFGFAYYlDTCKEERERGVTIQCNTKE-FFTEKYHYTIVDAPGHKDYIKNM 93
                68*********999997655544444444311444556777766654436677666666677677644.3345567899******9888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 516.96
//
Query:       MMETSP1061-20121228|6507_1  [L=750]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 2828.34
//
Query:       MMETSP1061-20121228|6506_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-21   73.7   0.0    2.1e-21   73.4   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    9.1e-06   23.1   0.0    1.6e-05   22.3   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.021   11.2   0.0      0.045   10.1   0.0    1.5  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.4   0.0   1.5e-24   2.1e-21       1     200 [.      59     247 ..      59     261 .. 0.88

  Alignments for each domain:
  == domain 1    score: 73.4 bits;  conditional E-value: 1.5e-24
   TIGR03903   1 etghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGig.aLlpgvedadeatltrttevlGsPaYaaPeqLRge.pvtaksDlYaWGLivleCLtGkrvvqGasvaevlyk 200
                 +t++ va+k +R + +e+e       Rei+l  +L+h n+v+L D  + e g l+ vFe+ +    + +    G L++      + q + +la  h++Gv+hRDLkPqn++v+  +     k+ DFG++ a  p ++        +t+ev+ +  Y  Pe L g  +  +  D++a G i++e +t ++   G+s  + +yk
  MMETSP1061-20121228|6506_1  59 QTDEIVALKRIRLE-VEDEGIPSTALREISLLRELTHENVVELKDC-VQEHGKLYLVFEFLDKDLKKYMESCSGLLSPLLVKSYLFQCVRGLAFCHARGVMHRDLKPQNLLVTRDGR---LKLADFGLArAFCPPIRP-------LTHEVV-TLWYRPPEILLGSqTYAPPVDVWAIGTIFVEMVTKRPLFPGDSEIDQIYK 247
                 68999*******98.99*************************9986.67889*********976666666789***************************************98876...5788****7578899988.......678887.679*****998861568899**********************98877776 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.2e-08   1.6e-05      94     137 ..     139     183 ..      83     190 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.2e-08
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgk 137
                 ++l +  + ++ +H  g++h Dl ++N++v +d++l l DfGL++
  MMETSP1061-20121228|6506_1 139 SYLFQCVRGLAFCHARGVMHRDLKPQNLLVtRDGRLKLADFGLAR 183
                 566667778899*****************956999********97 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.46   6.3e+02     132     154 ..      52      75 ..      41      97 .. 0.73
   2 ?   10.1   0.0   3.3e-05     0.045     274     302 ..     153     181 ..     137     187 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.46
   TIGR01982 132 vhkAvlveg.keVavKvlRPgiek 154
                 v+kA+ ++  + Va+K +R ++e+
  MMETSP1061-20121228|6506_1  52 VYKARDKQTdEIVALKRIRLEVED 75 
                 788876654277888888888775 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 3.3e-05
   TIGR01982 274 rdgfFHaDlHpGNilvakdgkiialDfGi 302
                 + g+ H Dl p N+lv++dg++ + DfG+
  MMETSP1061-20121228|6506_1 153 ARGVMHRDLKPQNLLVTRDGRLKLADFGL 181
                 57999***********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1731.70
//
Query:       MMETSP1061-20121228|6512_1  [L=982]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (982 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.20s 00:00:00.58 Elapsed: 00:00:00.28
# Mc/sec: 4469.42
//
Query:       MMETSP1061-20121228|6513_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 491.00
//
Query:       MMETSP1061-20121228|6516_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 728.38
//
Query:       MMETSP1061-20121228|6517_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|6518_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2484.22
//
Query:       MMETSP1061-20121228|6521_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 498.63
//
Query:       MMETSP1061-20121228|6522_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 367.27
//
Query:       MMETSP1061-20121228|6525_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1727.34
//
Query:       MMETSP1061-20121228|6526_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 418.92
//
Query:       MMETSP1061-20121228|6524_1  [L=912]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-88  294.0   0.0    3.3e-88  293.4   0.0    1.2  1  TIGR03972 rSAM_TYW1: wyosine biosynthesis protein TYW1
    0.00032   17.9   0.5     0.0011   16.2   0.0    1.9  2  TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein
     0.0015   16.2   0.1      0.073   10.7   0.1    2.6  3  TIGR04038 tatD_link_rSAM: radical SAM protein, TatD family-associated
     0.0023   14.8   0.0     0.0057   13.5   0.0    1.6  1  TIGR03470 HpnH: hopanoid biosynthesis associated radical SAM protein HpnH
     0.0034   14.8   0.2       0.62    7.4   0.3    2.6  3  TIGR04100 rSAM_pair_X: radical SAM enzyme, TIGR04100 family


Domain annotation for each model (and alignments):
>> TIGR03972  rSAM_TYW1: wyosine biosynthesis protein TYW1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  293.4   0.0   4.1e-91   3.3e-88       2     281 ..     462     741 ..     461     751 .. 0.96

  Alignments for each domain:
  == domain 1    score: 293.4 bits;  conditional E-value: 4.1e-91
   TIGR03972   2 akalkkqgYklvgkhsavklClWtkkalkeeksCYKskfYgieshrcvqmtpalalCnqrClfCWRsleeevkkeldelklePeeiveeiikaqrkllsGykgnekvdkekleealePkhvaisLsGEPtlYpkleelieelkkrglttFlvtnGtlpevlekleeePtqlYvsldapdkelykkiarpvvedaWerileslellkslktrtviRitlvkglndkeeeeyakliekaepdfvEvKaymhvGysr.krLkkenmpkheevrefakelaell.g 281
                 ak lkk+gYkl+g+hsavklC+Wtk++l+++  CYK++fYgi+s++c++ tp+la C ++C+fCWR++++ v+ke++ ++ +P++iv+e++k++ k+++  +g + v++++++ea + +h+a+sL GEP++Yp+++el+  l++r+++tFlvtnG++p+ +e+l    tqlYvs+dap  e+  +i rp+ +daWer+ e+l llk++ +rtv R+t+vkg+n +e e+yakli  ++ + vEvK+ ++ G+s  + L+++n p h+ev ++ k+l+++l +
  MMETSP1061-20121228|6524_1 462 AKSLKKEGYKLIGTHSAVKLCRWTKHQLRGRGGCYKHTFYGITSYQCMEATPSLA-CANKCVFCWRHHKNPVGKEWRWKTDDPHFIVDEAVKTHVKMIKETRGIPGVHPQRWKEAHTVRHCALSLVGEPVMYPRINELLGDLHDRNISTFLVTNGQHPKSIESL-IPITQLYVSVDAPTPESLVAIDRPLFSDAWERLREALTLLKHKGQRTVARLTVVKGWNSDEVEGYAKLIALGKVSLVEVKGVTFCGKSDaSNLNMSNTPWHHEVVDLVKNLKQELdK 741
                 5789***************************************************.*****************999998888**********************************************************************************.5559***********************************************************************************96368*******************998744 PP

>> TIGR02495  NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.5      0.56   4.6e+02      26      35 ..     517     526 ..     515     540 .. 0.75
   2 !   16.2   0.0   1.3e-06    0.0011      71     170 ..     587     684 ..     576     701 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.56
   TIGR02495  26 CnlkCpyChN 35 
                 C+ kC +C  
  MMETSP1061-20121228|6524_1 517 CANKCVFCWR 526
                 99******87 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.3e-06
   TIGR02495  71 GEpllqagladllrevkelglkvkldtngsnprvleelleeglvdyvalDvKapaekyeelvgkeknaakkailksleilkeskiefelRttvvrellee 170
                 GEp+++ ++++ll ++++ +++  l tng +p+ +e+l+    + yv +D  +p++   ++     + a +++ ++l +lk+++     R tvv++ +++
  MMETSP1061-20121228|6524_1 587 GEPVMYPRINELLGDLHDRNISTFLVTNGQHPKSIESLIPITQL-YVSVDAPTPES-LVAIDRPLFSDAWERLREALTLLKHKGQRTVARLTVVKGWNSD 684
                 9**************************************98855.99999999888.44444444555559999*******************9987654 PP

>> TIGR04038  tatD_link_rSAM: radical SAM protein, TatD family-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1     9e-05     0.073      17      46 ..     516     545 ..     500     561 .. 0.82
   2 ?    2.3   0.0     0.033        27     115     173 ..     627     684 ..     606     700 .. 0.74
   3 ?   -3.1   0.0       1.5   1.2e+03      38      58 ..     717     737 ..     707     776 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9e-05
   TIGR04038  17 rCtlaCqfCikekekevkgyelklekepsv 46 
                  C ++C+fC +++++ v++++ + + +p++
  MMETSP1061-20121228|6524_1 516 ACANKCVFCWRHHKNPVGKEWRWKTDDPHF 545
                 6****************9999999988874 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.033
   TIGR04038 115 vdalsisLnaqdeetyqkicrpklkedayeavleFikeakklikevivsavelegvdie 173
                 + +l +s++a+++e+   i rp ++ da+e + e +   k+  ++ ++    ++g + +
  MMETSP1061-20121228|6524_1 627 ITQLYVSVDAPTPESLVAIDRPLFS-DAWERLREALTLLKHKGQRTVARLTVVKGWNSD 684
                 67899********************.******999998888777655433333333333 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.5
   TIGR04038  38 lklekepsveeviaaikdlkk 58 
                 l++++ p  +ev++ +k+lk+
  MMETSP1061-20121228|6524_1 717 LNMSNTPWHHEVVDLVKNLKQ 737
                 555555555555555555443 PP

>> TIGR03470  HpnH: hopanoid biosynthesis associated radical SAM protein HpnH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   6.9e-06    0.0057      81     185 ..     587     691 ..     572     713 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 6.9e-06
   TIGR03470  81 GePllhkeideivrelvarkkfvylctnalllekkldkfepspyltfsvhldGlrekhdksvek...eGvfdkaveaikkakarGfrvttnttlfededaeevaelld 185
                 GeP++++ i+e++ +l +r+   +l tn+    k+++++ p   l++sv     +     ++++     ++++  ea+  +k++G r+    t+ ++ + +ev+ + +
  MMETSP1061-20121228|6524_1 587 GEPVMYPRINELLGDLHDRNISTFLVTNGQ-HPKSIESLIPITQLYVSVDAPTPE--SLVAIDRplfSDAWERLREALTLLKHKGQRTVARLTVVKGWNSDEVEGYAK 691
                 9****************************7.5799*****999999888655544..44444441223467777777788899******99**999999999876544 PP

>> TIGR04100  rSAM_pair_X: radical SAM enzyme, TIGR04100 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.3   0.00075      0.62      17      46 ..     516     544 ..     505     561 .. 0.79
   2 !    4.1   0.0    0.0079       6.5     119     183 ..     627     692 ..     606     704 .. 0.75
   3 ?   -2.7   0.0      0.98   8.1e+02      23      42 ..     707     726 ..     689     746 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00075
   TIGR04100  17 kCpcaCtfCirkekdgvgdsdslWlehePs 46 
                  C+ +C+fC r++k+ vg+ +  W   +P 
  MMETSP1061-20121228|6524_1 516 ACANKCVFCWRHHKNPVGK-EWRWKTDDPH 544
                 599************9986.5678888886 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0079
   TIGR04100 119 vdavsislnapdaesylevtrpkfgeksfdallkfakdckklvkev..vlsvvdviseeeiekskkl 183
                 +  + +s++ap+ es +++ rp f+ ++++ l++  + +k+  + +   l+vv   +++e+e   kl
  MMETSP1061-20121228|6524_1 627 ITQLYVSVDAPTPESLVAIDRPLFS-DAWERLREALTLLKHKGQRTvaRLTVVKGWNSDEVEGYAKL 692
                 456789******************9.99**9999888877776644125888888888888765555 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 0.98
   TIGR04100  23 tfCirkekdgvgdsdslWle 42 
                 tfC ++++  +  s++ W++
  MMETSP1061-20121228|6524_1 707 TFCGKSDASNLNMSNTPWHH 726
                 56666666666666666643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (912 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 3540.41
//
Query:       MMETSP1061-20121228|6520_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 875.30
//
Query:       MMETSP1061-20121228|6527_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.8    2.8  20.2        5.3    2.3  14.0    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3  14.0    0.0013       5.3     684     822 ..      99     238 ..      59     255 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0013
   TIGR00927 684 lgearlskdkeeellqeeakltqtkkeeskdeeepaklpevtvtpapapedkgdqeedpgsqgdva..eaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGe 822
                 l++ ++ k+++e +++e    ++++   s    e  +  +    p p  +++g q     + +++   ++++k++++ + +e++ + +g+k e+++ e++++ge+++ ++++++ +i++e++  ++++ + ++++++  G 
  MMETSP1061-20121228|6527_1  99 LSQPQPQKQRQEPQNEELLWKAEKELPASFAATEYPETRAPKELPQPKTQKQGKQRAKKKTSKAKTttKTKTKTKMKTGVTEKK-TKDGQKTEKKKVEKKEKGEKKDDGKNQTKTKIKTEKQPTSKDKDNNKDNNNKDAGA 238
                 455556666666666655544444444444444444555555566777777777766555544443004444555555555555.56788888888888889999999999999999999776666666655555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       393  (0.0958069); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.33
# Mc/sec: 2559.79
//
Query:       MMETSP1061-20121228|6523_1  [L=1457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       402  (0.098001); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.15s 00:00:00.88 Elapsed: 00:00:00.48
# Mc/sec: 4006.42
//
Query:       MMETSP1061-20121228|6528_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1289.43
//
Query:       MMETSP1061-20121228|6533_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|6530_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1283.48
//
Query:       MMETSP1061-20121228|6529_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 2173.94
//
Query:       MMETSP1061-20121228|6534_1  [L=558]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-73  244.6   0.0    4.7e-73  243.9   0.0    1.3  1  TIGR00535 SAM_DCase: S-adenosylmethionine decarboxylase proenzyme


Domain annotation for each model (and alignments):
>> TIGR00535  SAM_DCase: S-adenosylmethionine decarboxylase proenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.9   0.0   1.1e-76   4.7e-73       1     292 [.     118     430 ..     118     450 .. 0.88

  Alignments for each domain:
  == domain 1    score: 243.9 bits;  conditional E-value: 1.1e-76
   TIGR00535   1 feGaeklLeitf.....feakksvd..e.......ekgLRalsreqldeiLdlakCeilsskknkelDsyvLsesslfiidikiilktCGttklLlalpkilqlaeklssllkvksvkYsRksflfPsaqaalhrnfseevevLdkffdkg.....kayvlGdnaksqkWhlYvaete.retpkeedpdetlevlmteLdkekaskfvkssaast.........tnlakemtkssgideiipesaeisDldfePCGYsmnailaekaystihvtPekgfsyasfesniidqkkldysdlvkrvLrvfePsefsvtvfakna 292
                 feG+ek Le+ f     +e ++++   +       + gLR l+r++ld i d a+ +ilss +n  lD+yvLsesslf++ + ++lktCGtt+lL+++ ++++l  kl   l++  v YsRk+f fP+ qa +h++f +e e+L ++ +       + y+lG    + +W++Yva++  r++  e d d  l+++m ++d+++a+ f  ++ +           + ++++   +sgid ++p  a i D  fePCGYsmnail    ystih+tPe g sy sfe+n   qk+  y+ l+ +v+r f+P++f +t++a++ 
  MMETSP1061-20121228|6534_1 118 FEGPEKTLEVVFrrkgdTEGPQNISpgDaagggsrKTGLRSLGRAELDLICDRARVTILSSISNTYLDAYVLSESSLFVYPYMVVLKTCGTTTLLRCISVLIDLGHKLG--LEIDWVGYSRKNFNFPGDQAWPHQSFHQELEYLYSHRNLCdrldgNGYTLGPVTSD-HWFVYVADHTiRSQSLEMDTDRVLNIMMFDIDEDVANLFYYNNYDTLegeskadevKRISRQQSIKSGIDALVPG-AVIDDRAFEPCGYSMNAILF-RSYSTIHITPEAGSSYVSFETN---QKVASYNSLISNVVRTFRPKRFVLTLMADDL 430
                 9***********43333345677753222222222468*********************************************************************99..9********************************987543344566******98887.******987615555688999******************98877755788888888899999999******9998.9******************9.9*********************...99************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (558 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2539.65
//
Query:       MMETSP1061-20121228|6535_1  [L=909]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-40  137.2   3.3    7.5e-13   46.3   0.0    5.5  5  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      5e-32  109.4   1.3    9.9e-18   62.2   0.0    6.0  5  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.2e-25   87.8   0.1    2.5e-08   31.7   0.0    4.6  4  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.4e-22   78.1   6.0    4.4e-09   33.5   0.0    5.2  5  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    2.7e-19   67.8   9.3    4.6e-08   30.9   0.0    5.7  6  TIGR01659 sex-lethal: sex-lethal family splicing factor
    9.7e-17   58.4  24.9    2.5e-09   34.0   0.0    5.7  4  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.2e-11   41.9   0.3    4.1e-06   23.6   0.0    2.8  3  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    2.8e-07   27.7   0.0     0.0006   16.7   0.0    3.9  4  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.75   3.9e+02     179     198 ..      12      31 ..       7      38 .. 0.86
   2 !   25.9   0.1   2.2e-09   1.1e-06     115     370 ..      54     112 ..      52     300 .. 0.77
   3 !   46.3   0.0   1.5e-15   7.5e-13     284     361 ..     338     415 ..     323     472 .. 0.77
   4 !   33.2   0.0   1.3e-11   6.7e-09     178     365 ..     547     774 ..     541     781 .. 0.69
   5 !   40.4   0.0   8.8e-14   4.5e-11     128     266 ..     734     889 ..     734     907 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.75
   TIGR01628 179 tNlYvKnlddsvtedklrel 198
                 t + +Kn+++  te+ l+e+
  MMETSP1061-20121228|6535_1  12 TRVCIKNFPPRTTEQDLKEF 31 
                 77899999999999999986 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 2.2e-09
   TIGR01628 115 ilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksereatkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkar 370
                 i+ ck+  + +GkS+  +fv f + e A++Aie+   + ln ++++v+  ++k++++                                                                                                                                                                                                     +r
  MMETSP1061-20121228|6535_1  54 ITDCKILKNAKGKSRKVAFVGFRQPEQARHAIETFHRTYLNMSRITVEAATAKKDEA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SR 112
                 555666666666666666666666666666666666666666666666666555553.....................................................................................................................................................................................................33 PP

  == domain 3    score: 46.3 bits;  conditional E-value: 1.5e-15
   TIGR01628 284 qgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalA 361
                   + l+v+Nl  + ++e+L++ F++fG++t +++ +d++++ kg+GFV+f s+ +A++A ++l+   ++g+ L++  A
  MMETSP1061-20121228|6535_1 338 SKTRLFVRNLAFETTEEELQDYFSPFGKVTECHIPIDDQKRNKGYGFVTFESAVDAMEATNQLDKVDFQGRLLHILQA 415
                 456688888888888888888888888888888888888888888888888888888888888777777777666555 PP

  == domain 4    score: 33.2 bits;  conditional E-value: 1.3e-11
   TIGR01628 178 ftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit..............................laatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFee.fG.eitSakv.............mldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrke 365
                  t + vKnl+ +   ++l++lF   G+   +++    ++     a ++y ++ dAk+A  +l  ++++                              +a  ++  +       +  +   + + ++  +   +    + lYvkNl+ + ++e+L++lFe+  G ++ S+++               d++  S g+GFV  +s e A kA+++l+gk+++g  L +a+  +k 
  MMETSP1061-20121228|6535_1 547 KTAILVKNLPFDTRVEELEKLFHV-GQ-EPVKILLPPSRT---IAMIEYGHSTDAKRAFRKLAYRRFKhvpiylewaplhakrgasvgathsesessmKAGASEGSSAPEDAANSSGKSTANDNADDADEVDGDDVASSTLYVKNLNFETTEESLQKLFEKqLGrNVLSVRIprkvnpikggssaASDQRTLSMGYGFVELASHELARKALKTLQGKLVDGYALQLAISAQKA 774
                 577778888888888888888854.43.344444444443...5888888888888888888888888888888888888888888888877776665222333333333333334444444555555555566778899*******************8536756999987333233222222234677889*********************************9966554 PP

  == domain 5    score: 40.4 bits;  conditional E-value: 8.8e-14
   TIGR01628 128 SkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksere......atkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit...........laatgkilyVgraqkraeRea 266
                 S gYgfv+    e A++A+++l g l++  +   +   +k   +       t +k  t l v+n++ + t +++ +lF++fG++  +   k  ++  rgfafv+y +  +A  A+++l  +++            + +t++  +  + +++a+R+a
  MMETSP1061-20121228|6535_1 734 SMGYGFVELASHELARKALKTLQGKLVDGYALQLAISAQKAPSRtkpratPTGAKAPTKLMVRNVPFQATRTEILKLFGSFGQLKKVRLPKKFDGSHRGFAFVEYLTGKEALAAMNALSRTHLYgrhlvlewasvDEETNSGKHMEKLREKAKRDA 889
                 789************************998877766555544333566455667899*************************************************************99998766666666655333333334445555555544 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.4    0.0007      0.36     153     214 ..      61     120 ..      52     161 .. 0.51
   2 ?  -20.9  20.4         8   4.1e+03      12      79 ..     242     310 ..     185     333 .. 0.40
   3 !   62.2   0.0   1.9e-20   9.9e-18     215     313 ..     335     433 ..     326     470 .. 0.75
   4 !   27.1   0.0   8.6e-10   4.4e-07     200     292 ..     663     766 ..     654     777 .. 0.72
   5 !   35.2   0.0   3.1e-12   1.6e-09     212     337 ..     783     906 ..     766     909 .] 0.84

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0007
   TIGR01622 153 kDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgv.PvivqaseAEKNraakaatelsgdip 214
                 k+   ++S+ va+v F + e  + A++   +  l++  + v+a+ A K  a +  +e  g +p
  MMETSP1061-20121228|6535_1  61 KNA-KGKSRKVAFVGFRQPEQARHAIETFHRTYLNMsRITVEAATAKKDEASR--NEEAGAKP 120
                 332.3455555555555555555555555544444313555555555555555..22222222 PP

  == domain 2    score: -20.9 bits;  conditional E-value: 8
   TIGR01622  12 dssrea..drdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrresererere 79 
                 ++ ++    +   +d +++ s + s++  +s++ + d d d+ d ++dk +  + ++rk+ ++e + e++
  MMETSP1061-20121228|6535_1 242 SKTKQVddLDADGSDSDSDSSSS-SSSSSSSSDSDSDSDSDGEDLEQDKLSTEKPKDRKEARKEAPGEHG 310
                 11111100111111112211111.1111222223333333334444444444333333333333333333 PP

  == domain 3    score: 62.2 bits;  conditional E-value: 1.9e-20
   TIGR01622 215 nsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD.vteesdaslaskfed 313
                 + +++++L+v nl f+ tE+eL++ F pFG++    ++ D++  r kGyGF++F+ a  a eA ++l  ++  GR +++ +a+   +  s a++++k   
  MMETSP1061-20121228|6535_1 335 TGASKTRLFVRNLAFETTEEELQDYFSPFGKVTECHIPIDDQK-RNKGYGFVTFESAVDAMEATNQLDKVDFQGRLLHILQARPpPQAASSANANDKNLT 433
                 457899*************************************.**********************************9886653233333332222222 PP

  == domain 4    score: 27.1 bits;  conditional E-value: 8.6e-10
   TIGR01622 200 NraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFep.FGe.ielvqlqk.............DpetGrskGyGFiqFsdaeeakeAleklNGlelAGReik 292
                 N +a  a e++gd    +a   LYv nl f+ tE++L+++Fe   G+ +++v++++             D+ t  s GyGF++    e a++Al++l G  + G  ++
  MMETSP1061-20121228|6535_1 663 NDNADDADEVDGD---DVASSTLYVKNLNFETTEESLQKLFEKqLGRnVLSVRIPRkvnpikggssaasDQRT-LSMGYGFVELASHELARKALKTLQGKLVDGYALQ 766
                 3334444555544...56999********************96378549****98733322222222224444.689**********************777776665 PP

  == domain 5    score: 35.2 bits;  conditional E-value: 3.1e-12
   TIGR01622 212 dipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnteereqldekl 337
                 +  ++ a++kL v n+ f+ t  e+ ++F +FG++++v+l+k  ++   +G+ F+++   +ea +A+++l    l GR +    as   e++  +  +k +++  + + +g+++ + e+++ ++k+
  MMETSP1061-20121228|6535_1 783 TPTGAKAPTKLMVRNVPFQATRTEILKLFGSFGQLKKVRLPKKFDG-SHRGFAFVEYLTGKEALAAMNALSRTHLYGRHLVLEWASVDEETNSGKHMEKLREK-AKRDAAGAAVASAEQKRKNKKI 906
                 33456689**********************************8876.99*******************************99998877777777777777775.8889999999999988888887 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0053       2.7      33     156 ..      57      93 ..      51     173 .. 0.70
   2 !   31.7   0.0   4.8e-11   2.5e-08     268     342 ..     338     412 ..     310     427 .. 0.77
   3 !   19.3   0.0   2.8e-07   0.00014     223     349 ..     636     774 ..     590     776 .. 0.69
   4 !   25.1   0.0     5e-09   2.6e-06       4      70 ..     791     856 ..     788     874 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0053
   TIGR01661  33 cklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvsyarPssdsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttP 156
                 c                                                                                      +il+ n ++ s+ v f+ f + e+a +ai ++  t  
  MMETSP1061-20121228|6535_1  57 C--------------------------------------------------------------------------------------KILK-NAKGKSRKVAFVGFRQPEQARHAIETFHRTYL 93 
                 3......................................................................................3443.44566666666666666666666666554433 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 4.8e-11
   TIGR01661 268 agycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqv 342
                 +   +fv nl+ +t e  l   f+pfG v++  i  d   ++ kGygfv+     +a+ a + l+   + +r l +
  MMETSP1061-20121228|6535_1 338 SKTRLFVRNLAFETTEEELqDYFSPFGKVTECHIPIDD-QKRNKGYGFVTFESAVDAMEATNQLDKVDFQGRLLHI 412
                 22468999999888777773589999999999997776.5778999999998888888888888888888888765 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 2.8e-07
   TIGR01661 223 lavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavl.qlfg.pfG.avqsvkiirdlt.........tnk...ckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnka 349
                  +++     +++ a+++aa++ +  +a+  +       ++  +d a   ++v nl  +t e  l +lf  ++G  v sv+i r ++         +++     Gygfv ++ ++ a +a+++l G  + +  lq+++ ++ka
  MMETSP1061-20121228|6535_1 636 ESSMKAGASEGSSAPEDAANSSGKSTANDNADD---ADEVDGDDVASSTLYVKNLNFETTEESLqKLFEkQLGrNVLSVRIPRKVNpikggssaaSDQrtlSMGYGFVELASHELARKALKTLQGKLVDGYALQLAISAQKA 774
                 334433445556666666666666666665533...2444446667778*******998777773699636785699**998877522222222222223357********************************9988775 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 5e-09
   TIGR01661   4 tnlivnylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrl 70 
                 t l+v  +P + t+ ei  lf+s+G++  ++l   k  G   G+ fv+y+  ++a+ a+n+l    l
  MMETSP1061-20121228|6535_1 791 TKLMVRNVPFQATRTEILKLFGSFGQLKKVRLP-KKFDGSHRGFAFVEYLTGKEALAAMNALSRTHL 856
                 889999999999999999999999999999985.599999999999999999999999999976665 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.2     0.003       1.5     267     328 ..      66     127 ..      55     155 .. 0.77
   2 !   33.5   0.0   8.5e-12   4.4e-09     212     312 ..     315     423 ..     298     456 .. 0.76
   3 ?   -3.9   0.0       1.8   9.4e+02      99     119 ..     583     603 ..     581     607 .. 0.78
   4 !   18.5   0.0   3.1e-07   0.00016     211     303 ..     658     769 ..     654     789 .. 0.71
   5 !   17.9   0.0   4.4e-07   0.00023      59     130 ..     791     861 ..     780     872 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.003
   TIGR01648 267 kirdyafvhfedredavkamdelnGkeleGseievtlakPvdkesyvrytk.aakgrgkeaqa 328
                 k r  afv f + e+a +a++ +  + l+ s i v  a    k++ +r ++ +ak r +  +a
  MMETSP1061-20121228|6535_1  66 KSRKVAFVGFRQPEQARHAIETFHRTYLNMSRITVEAAT-AKKDEASRNEEaGAKPRSGDVKA 127
                 66889***************************9998665.56666777665146666655555 PP

  == domain 2    score: 33.5 bits;  conditional E-value: 8.5e-12
   TIGR01648 212 hviavdWaePevevdedvmak...vkilyvrnlmletteeiieksfsefkpGav.......ervkkirdyafvhfedredavkamdelnGkeleGseievtlakPvdkesy 312
                 + + vd  e + +  +  ma+      l+vrnl+ ettee ++  fs f  G+v       +  k+ + y fv fe+  da++a ++l+  +++G  + +  a+P+ +   
  MMETSP1061-20121228|6535_1 315 DDMNVDDDEDDDDAKQLAMATgasKTRLFVRNLAFETTEEELQDYFSPF--GKVtechipiDDQKRNKGYGFVTFESAVDAMEATNQLDKVDFQGRLLHILQARPPPQAAS 423
                 5555665555555555566542213469*******************99..76621111224569999*************************************977644 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 1.8
   TIGR01648  99 rGyafvtfcnkeeakeavkel 119
                 r  a++ + + ++ak+a ++l
  MMETSP1061-20121228|6535_1 583 RTIAMIEYGHSTDAKRAFRKL 603
                 667888888888888888876 PP

  == domain 4    score: 18.5 bits;  conditional E-value: 3.1e-07
   TIGR01648 211 GhviavdWaePevevdedvmakvkilyvrnlmletteeiieksfsefk.........pGavervkkir.......d.......yafvhfedredavkamdelnGkeleGseievtl 303
                 G++ a d a+   evd d +a+   lyv+nl  ettee ++k f++           p +v+ +   +       d       y fv + + e a ka++ l Gk ++G ++++++
  MMETSP1061-20121228|6535_1 658 GKSTANDNADDADEVDGDDVASS-TLYVKNLNFETTEESLQKLFEKQLgrnvlsvriPRKVNPI---KggssaasDqrtlsmgYGFVELASHELARKALKTLQGKLVDGYALQLAI 769
                 77889999********9988875.79****************9986420111111124444444...222222222333444499************************9987655 PP

  == domain 5    score: 17.9 bits;  conditional E-value: 4.4e-07
   TIGR01648  59 cevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpGrll 130
                 + ++v  +P      e++ lf   G++ ++rl   +dG  rG+afv +   +ea  a+  l    +  Gr+l
  MMETSP1061-20121228|6535_1 791 TKLMVRNVPFQATRTEILKLFGSFGQLKKVRLPKKFDGSHRGFAFVEYLTGKEALAAMNALSRTHL-YGRHL 861
                 56778888888889999*******************************999999999988876555.35554 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0077         4     223     254 ..      57      87 ..      52      93 .. 0.82
   2 ?   -3.2   1.1       2.1   1.1e+03      42     102 ..     200     259 ..     156     271 .. 0.48
   3 !   27.1   0.1   1.3e-09   6.5e-07     101     200 ..     333     431 ..     255     439 .. 0.82
   4 ?    2.9   0.0      0.03        15      81     130 ..     521     570 ..     516     608 .. 0.76
   5 ?    2.0   0.0     0.053        27     188     216 ..     674     702 ..     669     714 .. 0.88
   6 !   30.9   0.0   8.9e-11   4.6e-08     131     261 ..     717     857 ..     705     905 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0077
   TIGR01659 223 knilrdkltgkprgvafvrfnkreeaqeaisa 254
                   il++   gk r vafv f + e+a+ ai +
  MMETSP1061-20121228|6535_1  57 CKILKN-AKGKSRKVAFVGFRQPEQARHAIET 87 
                 566665.579*******************976 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.1
   TIGR01659  42 pedtdfssypsssrsrrrgyndfsgaggs...saatlgsvgnlanaastnslnslgsggsddnd 102
                   d+d s   sss +   + +d +  +g+   s ++l  +  l +   t  ++ l + gsd+++
  MMETSP1061-20121228|6535_1 200 DSDSDDS--SSSSDDDDDDDDDTAAKAGGktkSKSALSDMDFLRS--KTKQVDDLDADGSDSDS 259
                 2222222..222333333334444434431223334444444433..23344444444444322 PP

  == domain 3    score: 27.1 bits;  conditional E-value: 1.3e-09
   TIGR01659 101 ndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyarpggesikdtnlyvtn 200
                   t+as t l v  l  + t+ el   f   g +  c i  d +     gy+fv f s +d++ a ++l+ +  + + l++  arp  +    +n    n
  MMETSP1061-20121228|6535_1 333 MATGASKTRLFVRNLAFETTEEELQDYFSPFGKVTECHIPIDDQK-RNKGYGFVTFESAVDAMEATNQLDKVDFQGRLLHILQARPPPQAASSANANDKN 431
                 56899**********************************877654.467************************************987776666655555 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.03
   TIGR01659  81 lanaastnslnslgsggsddndtrasgtnlivnylpqdmtdrelyalfrt 130
                 +  + s+n   + g   s     + s t ++v  lp d +  el  lf  
  MMETSP1061-20121228|6535_1 521 MEALVSANEPSADGDSSSATLTKKRSKTAILVKNLPFDTRVEELEKLFHV 570
                 6666777877778888888889999**********************974 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.053
   TIGR01659 188 gesikdtnlyvtnlprtitddqldtifgk 216
                 g+++  + lyv nl+   t++ l+ +f k
  MMETSP1061-20121228|6535_1 674 GDDVASSTLYVKNLNFETTEESLQKLFEK 702
                 78899999*******************88 PP

  == domain 6    score: 30.9 bits;  conditional E-value: 8.9e-11
   TIGR01659 131 igpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsy............arpggesikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipe 261
                 + pi         +   s+gy+fv++as   +++a+k+l+g  v    l+++             a p g +   t l v n+p   t  ++  +fg +g++ +k  l  k+ g  rg afv +   +ea  a+ al      
  MMETSP1061-20121228|6535_1 717 VNPIKGGSSAASDQRTLSMGYGFVELASHELARKALKTLQGKLVDGYALQLAIsaqkapsrtkprATPTGAK-APTKLMVRNVPFQATRTEILKLFGSFGQL-KKVRLPKKFDGSHRGFAFVEYLTGKEALAAMNALSRTHLY 857
                 556655554444455689***********************9999877665431122222211113344443.4699***********************97.788899*************************999876555 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0   0.00083      0.43     177     243 ..      12      87 ..       4     143 .. 0.78
   2 ?  -18.8  15.0         8   4.1e+03     105     131 ..     228     254 ..     175     303 .. 0.40
   3 !   28.2   1.1   2.8e-10   1.5e-07     256     398 ..     293     440 ..     279     455 .. 0.73
   4 !   34.0   0.0   4.9e-12   2.5e-09     178     379 ..     681     872 ..     673     902 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00083
   TIGR01642 177 RrlyvgniPpeakeeavvdFfndlllavgkdkaed.........gkavkaviinkdkkFaflEfrtveeatlalal 243
                  r+ + n Pp ++e+++ +F+ ++ +    ++  d           +++     k +k af+ fr +e+a  a++ 
  MMETSP1061-20121228|6535_1  12 TRVCIKNFPPRTTEQDLKEFLLHQQTGQSSNRNDDggplrlqitDCKILKNAKGKSRKVAFVGFRQPEQARHAIET 87 
                 5899999999999999999999988888888888888888776533444445567889999999999999988764 PP

  == domain 2    score: -18.8 bits;  conditional E-value: 8
   TIGR01642 105 kkddkkrslwdvkppkyeavtavqaka 131
                  k++   s +d  ++k ++v++  a+ 
  MMETSP1061-20121228|6535_1 228 TKSKSALSDMDFLRSKTKQVDDLDADG 254
                 222222233333333333333333322 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 2.8e-10
   TIGR01642 256 rRphdYiPvpeatpevsqkns..dinlkavekl....vnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakqatiekensdvlvtllakal 398
                 ++p+d +   +  p+   + s  d+n++ +e        + ++  s+ +l++ nL ++ +++ +++   +FG +    +  d +   +KGy+F+ ++ + ++  A + L+ ++  ++ L++ +A    + a   + n + l  ++++ l
  MMETSP1061-20121228|6535_1 293 EKPKDRKEARKEAPGEHGNTSgdDMNVDDDEDDddakQLAMATGASKTRLFVRNLAFETTEEELQDYFSPFGKVTECHIPIDDQ-KRNKGYGFVTFESAVDAMEATNQLDKVDFQGRLLHILQARPPPQAASSANANDKNLTWKQKQEL 440
                 55555555555555443333311444444444344444555666799*****************************99966644.479*********************************9999888888887777555544555544 PP

  == domain 4    score: 34.0 bits;  conditional E-value: 4.9e-12
   TIGR01642 178 rlyvgniPpeakeeavvdFfndlllavgkdkaed........gkavkaviinkdkkFaflEfrtveeatlala.ldsiiyenvslkirRphdYiPvpeatpevsqknsdinlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakq 379
                  lyv n+ +e++ee++ + f+++l   +     +        g    + +      + f+E+++ e a +al+ l++   ++++l++    +  P+         +++           ++ t+   + kl + n+P++ +   +  L  sFG+Lk   l K   +G+ +G+aF+ey     +  A++aL   +l+++ L    A+v+ + 
  MMETSP1061-20121228|6535_1 681 TLYVKNLNFETTEESLQKLFEKQLGRNVLSVRIPrkvnpikgGSSAASDQRTLSMGYGFVELASHELARKALKtLQGKLVDGYALQLAISAQKAPSR--------TKPR----------ATPTGAKAPTKLMVRNVPFQATRTEILKLFGSFGQLKKVRLPKKF-DGSHRGFAFVEYLTGKEALAAMNALSRTHLYGRHLVLEWASVDEET 872
                 5899999999999999999999886655554444444445554555555555556689999999999999886589999999999886544444333........2222..........234677899********************************9986.8***************************************998765 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0     8e-09   4.1e-06     205     284 ..     344     422 ..     325     432 .. 0.87
   2 !   15.1   0.0   3.1e-06    0.0016     148     264 ..     736     850 ..     717     862 .. 0.80
   3 ?   -2.1   0.1      0.51   2.6e+02     430     465 ..     870     905 ..     858     907 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 8e-09
   TIGR01645 205 vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtPPdal 284
                 v  +  + +ee+l+  f  fG++ +c++  +   ++ kG+Gf+ fe +    ea   ++  d+ G+ll + +a  PP+a 
  MMETSP1061-20121228|6535_1 344 VRNLAFETTEEELQDYFSPFGKVTECHIPIDDQ-KRNKGYGFVTFESAVDAMEATNQLDKVDFQGRLLHILQARPPPQAA 422
                 6666677899******************99876.5679***************************************986 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 3.1e-06
   TIGR01645 148 gfafve.evPeaallaleqmngallGGrnlkvgrPsnlpqaqpiidevqeeakkfnri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnl 264
                 g+ fve    e a+ al  + g+l+ G  l++      + ++         ak+  ++ v  v    + +++  +f +fG+++k +l ++   ++h+Gf f+e+    + +ea+a+mn 
  MMETSP1061-20121228|6535_1 736 GYGFVElASHELARKALKTLQGKLVDGYALQLAISAQKAPSRTKPRATPTGAKAPTKLmVRNVPFQATRTEILKLFGSFGQLKKVRLPKKFD-GSHRGFAFVEYL---TGKEALAAMNA 850
                 78899977789999999999999999999999855444444444455556777776666999999999*******************99865.68********74...56799999996 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.51
   TIGR01645 430 epskeaasslalaaaakakeaaaalllenkkkkkek 465
                 e  + +     l ++ak  +a aa ++ ++k+k++k
  MMETSP1061-20121228|6535_1 870 EETNSGKHMEKLREKAKRDAAGAAVASAEQKRKNKK 905
                 444555566678899999999999999888877765 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.7   8.6e+02     332     368 ..      60     100 ..      54     115 .. 0.54
   2 !    5.0   0.0    0.0041       2.1       6      58 ..     343     400 ..     295     413 .. 0.77
   3 ?    1.2   0.0     0.059        30     415     448 ..     679     713 ..     520     774 .. 0.68
   4 !   16.7   0.0   1.2e-06    0.0006     280     368 ..     772     863 ..     726     890 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.7
   TIGR01649 332 lknkket....alvemadpqqaqlalthLdkvklfgkklrv 368
                 lkn k++    a+v + +p+qa +a++   ++ l   ++ v
  MMETSP1061-20121228|6535_1  60 LKNAKGKsrkvAFVGFRQPEQARHAIETFHRTYLNMSRITV 100
                 44444322222555555555555555555555544444444 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0041
   TIGR01649   6 HvRnlpeevveadlvelliefGkvsyvlv.l....kgkrqAlvEfedeesAkalVnfa 58 
                  vRnl  e +e +l +  ++fGkv+   + +    ++k   +v fe    A ++ n  
  MMETSP1061-20121228|6535_1 343 FVRNLAFETTEEELQDYFSPFGKVTECHIpIddqkRNKGYGFVTFESAVDAMEATNQL 400
                 6899999999999999999999998765422211122334567776666666665554 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.059
   TIGR01649 415 satLHlsNiPlsvsEedlkelfaekgv.kvkafkv 448
                 s+tL   N+  + +Ee+l++lf+++   +v ++++
  MMETSP1061-20121228|6535_1 679 SSTLYVKNLNFETTEESLQKLFEKQLGrNVLSVRI 713
                 55666666666666666666665554434444443 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 1.2e-06
   TIGR01649 280 saalapaisstapaasglgsVllvsnLeeekvtpdalFnlfgvYGdvervkilk....nkketalvemadpqqaqlalthLdkvklfgkklrv 368
                 ++a + + +  +p++ +  + l+v n+   + t  ++ +lfg +G++++v++ k    + ++ a+ve+ ++++a  a++ L +++l+g++l +
  MMETSP1061-20121228|6535_1 772 QKAPSRTKPRATPTGAKAPTKLMVRNVPF-QATRTEILKLFGSFGQLKKVRLPKkfdgSHRGFAFVEYLTGKEALAAMNALSRTHLYGRHLVL 863
                 23333344455566666667899**9965.56777889************7666222267788**************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.80u 0.12s 00:00:00.92 Elapsed: 00:00:00.71
# Mc/sec: 1689.83
//
Query:       MMETSP1061-20121228|6537_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 544.46
//
Query:       MMETSP1061-20121228|6543_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-23   78.9   0.0    1.4e-22   78.1   0.0    1.4  1  TIGR02227 sigpep_I_bact: signal peptidase I
    1.5e-09   35.5   0.0    3.1e-09   34.4   0.0    1.5  1  TIGR02771 TraF_Ti: conjugative transfer signal peptidase TraF
    5.1e-05   21.0   0.3    0.00011   20.0   0.0    1.6  2  TIGR02228 sigpep_I_arch: signal peptidase I
    5.5e-05   21.4   0.1       0.23    9.8   0.0    2.6  2  TIGR02754 sod_Ni_protease: nickel-type superoxide dismutase maturation protease


Domain annotation for each model (and alignments):
>> TIGR02227  sigpep_I_bact: signal peptidase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   1.4e-25   1.4e-22       9     148 ..     328     485 ..     319     486 .] 0.84

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 1.4e-25
   TIGR02227   9 lllallirtfvfelvkvpgesMeptlkegdlilvnklayg..taepkrgDivvfkapeeekk.............eyikRviglpGDkvei.rdgklyingkkvees...ylkeekskdteelneadtkvkVPegkyfvLGDnrdnslDSRsiGlvkkd 148
                 l++a+l  + +++l+ +p++sM ptlk gd++lv+k++ +  + + + gD+v f+ p++ ++              ++kR+ + pGD+v++ +dgk+ +n++ v      + ++e  +  e+  e++ ++ + + k+fv+GD  + s DSR +G+ +++
  MMETSP1061-20121228|6543_1 328 LFTAFL-LSQAISLFFIPSKSMDPTLKVGDVLLVDKVSSRtpFRKNNVGDMVLFSPPSKLQDivaksggnlnsrdLFVKRIAASPGDRVTVfKDGKVEVNDQDVVTGrrdLCEAEPLRLIEKYIEPSNDQIIDQKKVFVMGDCSSVSVDSRVWGPLDSE 485
                 333444.4556679***********************9998999**********999988889***********99*************9625699*****988765555677776666666666555589***********************99876 PP

>> TIGR02771  TraF_Ti: conjugative transfer signal peptidase TraF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0     3e-12   3.1e-09      44     160 ..     369     486 .]     359     486 .] 0.80

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 3e-12
   TIGR02771  44 skevergkyvvfcppdnavleealeRgylreglCkGgfepllKrvlalkGdrvtvrad.vvavngkllpvskaeavdse.....gralaplaegvvpkg.lllvsdtsptSFDsRYfGlisreq 160
                  ++ + g++v+f pp + +   a   g l++         ++Kr++a +Gdrvtv +d +v vn++ + ++++   ++e      + ++p +++++ ++ ++++ d s+ S DsR +G++  e+
  MMETSP1061-20121228|6543_1 369 FRKNNVGDMVLFSPPSKLQDIVAKSGGNLNSRD------LFVKRIAASPGDRVTVFKDgKVEVNDQDVVTGRRDLCEAEplrliEKYIEPSNDQIIDQKkVFVMGDCSSVSVDSRVWGPLDSEN 486
                 45667799*******999988888888887655......7**************966537********999999998872111134456777888887789******************98775 PP

>> TIGR02228  sigpep_I_arch: signal peptidase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       1.4   1.4e+03      56      68 ..     221     233 ..     217     235 .. 0.81
   2 !   20.0   0.0     1e-07   0.00011      24      74 ..     331     385 ..     311     392 .. 0.68

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.4
   TIGR02228  56 vdpedikvGdviv 68 
                  d e+++vG v+v
  MMETSP1061-20121228|6543_1 221 HDTESVRVGKVVV 233
                 68899*****998 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1e-07
   TIGR02228  24 vskasgedpvvvvlSgSMePtfntGdlvlveg....vdpedikvGdvivykseek 74 
                 ++ +s  + + ++ S+SM+Pt+++Gd++lv++    ++ ++  vGd + +  + k
  MMETSP1061-20121228|6543_1 331 AFLLSQAISLFFIPSKSMDPTLKVGDVLLVDKvssrTPFRKNNVGDMVLFSPPSK 385
                 33344445566799***************997311234578889**999987765 PP

>> TIGR02754  sod_Ni_protease: nickel-type superoxide dismutase maturation protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00023      0.23       6      59 ..     346     401 ..     343     418 .. 0.81
   2 !    9.0   0.0    0.0004      0.41      55      82 ..     458     485 ..     454     486 .] 0.89

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00023
   TIGR02754   6 esmsPtlkpedrvlvqPllki..arvkeaGevvvvrHPlkpavliiKrlaavddng 59 
                 +sm Ptlk +d +lv  +     +r +++G +v    P+k +  + K+  +++  +
  MMETSP1061-20121228|6543_1 346 KSMDPTLKVGDVLLVDKVSSRtpFRKNNVGDMVLFSPPSKLQDIVAKSGGNLNSRD 401
                 7**************98765422688889***999999998888888766655555 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0004
   TIGR02754  55 vddnglellgdnpkastdsrklGlvske 82 
                 +d+  ++++gd  + s+dsr +G++ +e
  MMETSP1061-20121228|6543_1 458 IDQKKVFVMGDCSSVSVDSRVWGPLDSE 485
                 678899*****************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1886.67
//
Query:       MMETSP1061-20121228|6544_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-36  122.0   0.1    7.6e-36  121.4   0.0    1.2  1  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
    2.8e-08   31.6   0.1      5e-07   27.6   0.0    2.2  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    7.6e-07   27.3   1.6    3.9e-06   25.0   0.0    2.4  2  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
    2.9e-05   21.7   0.1    4.6e-05   21.1   0.0    1.3  1  TIGR02247 HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
    0.00058   17.7   0.0     0.0089   13.9   0.0    2.1  2  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
      0.002   15.8   0.0     0.0035   15.0   0.0    1.4  1  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
     0.0067   14.3   0.0      0.015   13.1   0.0    1.5  1  TIGR00586 mutt: mutator mutT protein
      0.008   13.5   0.0      0.016   12.5   0.0    1.5  1  TIGR01691 enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
  ------ inclusion threshold ------
      0.024   11.8   0.1       0.15    9.2   0.0    2.2  3  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
      0.036   11.8   0.0      0.068   11.0   0.0    1.5  1  TIGR01990 bPGM: beta-phosphoglucomutase


Domain annotation for each model (and alignments):
>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   0.0   1.9e-38   7.6e-36       2     182 ..     259     441 ..     258     442 .. 0.91

  Alignments for each domain:
  == domain 1    score: 121.4 bits;  conditional E-value: 1.9e-38
   TIGR01993   2 vllFDlDntLypssagifklikrniteflaeklklseeeaeklrkdyykeyGttlaGLvil.h....eidadeyleevhdrlpyeklkpdpelrnlllklk..qrkiiftNadkahaeralkrLgiedcFdgiidieaanlelilKPspeayekalreag.vdpekaifldDsarNiaaakalglktvl 182
                 v++FD D++Ly    ++ + ++ +i+ef +++ +l++ +      ++y+++Gt+l+GL    h    e ++d yl+ vhd   +e+l+ d+elr++++++     k++ft + ++haer+lk+Lgied F +iid++  nl   +K s+ea+e+a+++a  +dpe  +fldDs++Ni +a+ +g++  l
  MMETSP1061-20121228|6544_1 259 VIFFDCDDCLYFDGWKLASKLRDKIEEFCTSRKNLPPGKSD----ELYQKHGTALKGLLDEgHmkecEDEIDAYLRDVHDVPVHEHLTIDNELRDMISRIDpsIPKYVFTASVRHHAERCLKALGIEDLFVDIIDVKSCNLA--TKHSREAFEAAMKIASvTDPETVLFLDDSVKNIRVARSMGIRSFL 441
                 79***********************************9976....67***********865331111445788*******77778888************97778***********************************99..8***************99**********************99876 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.2e-09     5e-07       4     219 ..     259     467 ..     258     469 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.2e-09
   TIGR02253   4 avfFDlddTLi.dtsklaekalrevvevlieegleldeeealeeleklikelgsny.ekhfdslirrlseeaepklvaeaviaylklkl.aylkvypdvvkvLleLresGyrlgliTdgltekqweklerlgvrdfFdavi.vseelgveKPhpkiFkaalkrlgvkpeeavmvGDrlekDikGaknlglktvwinrgkskkeeddvvekpdfeisslre 219
                 ++fFD dd L+ d  kla+k + +++e+ +++ ++l + +  e ++k    l++   e h+++            ++ + +  ++++++ + l+   + ++++ ++  s +   + T ++++     l++lg++d+F ++i v++   + K   + F+aa+k + v   e+v+  D  +k i+ a+ +g+ ++++ r+    ++  ++e ++ ei+++++
  MMETSP1061-20121228|6544_1 259 VIFFDCDDCLYfDGWKLASKLRDKIEEFCTSR-KNLPPGKSDELYQKHGTALKGLLdEGHMKE---------CEDEIDAYLRDVHDVPVhEHLTIDNELRDMISRIDPS-IPKYVFTASVRHHAERCLKALGIEDLFVDIIdVKSCNLATKHSREAFEAAMKIASVTDPETVLFLDDSVKNIRVARSMGIRSFLVGRTARDLTKTVTTEDAEHEIDRIHD 467
                 58999999987566788888888888888888.555555544444433222222110122222.........2233333344444433214557778889999999999.888899*********************88885677777899999*****************************************9999888777777888999998876 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.3      0.21        88       1      12 [.     259     270 ..     259     334 .. 0.79
   2 !   25.0   0.0   9.4e-09   3.9e-06      92     154 .]     376     442 ..     299     442 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.21
   TIGR01509   1 ailFDlDgvLvd 12 
                 +i+FD+D++L+ 
  MMETSP1061-20121228|6544_1 259 VIFFDCDDCLYF 270
                 589*******84 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 9.4e-09
   TIGR01509  92 vrlgledkfdkvid.dv..gsgKPdpdiylqalkklglk.peeclfvdDsaagieaakaaGmktvlv 154
                 ++lg+ed+f ++id       +K   +++++a+k   ++ pe +lf dDs ++i+ a+++G++++lv
  MMETSP1061-20121228|6544_1 376 KALGIEDLFVDIIDvKScnLATKHSREAFEAAMKIASVTdPETVLFLDDSVKNIRVARSMGIRSFLV 442
                 6789999999998833222357****************************************99876 PP

>> TIGR02247  HAD-1A3-hyp: epoxide hydrolase N-terminal domain-like phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.1e-07   4.6e-05     131     199 ..     376     446 ..     323     454 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.1e-07
   TIGR02247 131 lpsdlgalFDevvE..sckeglrKPDariyqlvlerlgv.kPeeivfLDDLgsnlkaAaklGittikvedee 199
                   + +  lF ++++  sc    +K     ++ +++  +v  Pe ++fLDD  +n+++A+++Gi + +v ++ 
  MMETSP1061-20121228|6544_1 376 KALGIEDLFVDIIDvkSCNLA-TKHSREAFEAAMKIASVtDPETVLFLDDSVKNIRVARSMGIRSFLVGRTA 446
                 455555667666542256554.5666778899999888846************************9998765 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.14        56     113     168 ..     132     194 ..     127     197 .. 0.79
   2 !   13.9   0.0   2.2e-05    0.0089      59     195 ..     304     447 ..     270     449 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.14
   TIGR01428 113 LsNgstatlkslvkkag......ldlefdallsadavraYKPapk.vYelalealgvkpeevl 168
                 L N++ +++++++  +       ++  f   +  d+vr++    + vY+  le++g++peev+
  MMETSP1061-20121228|6544_1 132 LRNATREMMEEMNIDLSegsgneMNELFTFPYQDDKVRVWGGMFEvVYRRPLEEIGMQPEEVA 194
                 66777777777765554445677889999999999999999987636*************997 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.2e-05
   TIGR01428  59 ltaealkalleelgleleeaaaerlveavkrLepfp......dvaagLkkLkerglklviLsNgstatlkslvkkagldlefdallsadavr.aYKPapkvYelalealgvk.peevllvasnawDlkgAkklGlktvwvnRpge 195
                  +  alk ll+e ++++ e++++  ++ v++ +++       +  + + ++    ++ ++ + +  +  ++ +k +g+++ f +++++ +   a K + +++e a++   v+ pe vl+   ++ +++ A+++G++++ v R++ 
  MMETSP1061-20121228|6544_1 304 KHGTALKGLLDEGHMKECEDEIDAYLRDVHDVPVHEhltidnELRDMISRIDPS-IPKYVFTASVRHHAERCLKALGIEDLFVDIIDVKSCNlATKHSREAFEAAMKIASVTdPETVLFLDDSVKNIRVARSMGIRSFLVGRTAR 447
                 566788888888888888888888888888888886222222445666666665.8889999999999********************9997478************999988****************************9875 PP

>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.4e-06    0.0035     134     203 .]     371     441 ..     339     441 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8.4e-06
   TIGR02252 134 lrklLealgleelf.dfvvvSaevgaeKPdpkIFekaleklg.ikpeevlhiGDslekDvegakaaGlrall 203
                  ++ L+alg+e+lf d++ v +   a K +++ Fe a++ +    pe vl++ Ds++  ++ a+++G+r++l
  MMETSP1061-20121228|6544_1 371 AERCLKALGIEDLFvDIIDVKSCNLATKHSREAFEAAMKIASvTDPETVLFLDDSVK-NIRVARSMGIRSFL 441
                 57789*****77662555565556678************999678999999977775.6**********987 PP

>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.7e-05     0.015      20     106 ..     102     193 ..      95     207 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.7e-05
   TIGR00586  20 fitrraadadla.nkle.fPGGkieaGetpeqavvrelqeevgitaqhfe...lfekleyeypqkkltlyvylvrelegepfikegeegewv 106
                 +++rr++ +d+  +kl+  PGG +  Ge   +   re+ ee+ i   +++   + e + + y + k+ ++ ++ +     p  + g ++e v
  MMETSP1061-20121228|6544_1 102 LVQRRTKIKDYCpGKLDpTPGGVVGFGESFLRNATREMMEEMNIDLSEGSgneMNELFTFPYQDDKVRVWGGMFEVVYRRPLEEIGMQPEEV 193
                 5566665555432556537*************************988765111566788999999999998888888777777766665554 PP

>> TIGR01691  enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0     4e-05     0.016     163     205 ..     408     448 ..     380     469 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4e-05
   TIGR01691 163 kkiakqlkedpkeiLfLsDiiaeldaarkaGlrtlllvregna 205
                  kia+   +dp+ +LfL D  +++  ar +G+r  l+ r   +
  MMETSP1061-20121228|6544_1 408 MKIAS--VTDPETVLFLDDSVKNIRVARSMGIRSFLVGRTARD 448
                 45555..689**************************9998754 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   8.3e+02     174     200 ..     168     194 ..     164     197 .. 0.76
   2 ?   -1.0   0.0      0.46   1.9e+02      86     118 ..     337     369 ..     323     374 .. 0.84
   3 ?    9.2   0.0   0.00037      0.15     177     223 ..     396     442 ..     386     463 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2
   TIGR01458 174 aevvGkPskeffkealralGvepeeav 200
                 + v G   +  +++ l+ +G++pee+ 
  MMETSP1061-20121228|6544_1 168 VRVWGGMFEVVYRRPLEEIGMQPEEVA 194
                 55666666677889999******9975 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.46
   TIGR01458  86 lrPyllvdddvleefdgidtsdPnavvlgeaee 118
                 +  +l +d++ ++    id s P  v  + +  
  MMETSP1061-20121228|6544_1 337 VHEHLTIDNELRDMISRIDPSIPKYVFTASVRH 369
                 677999*****************9999888765 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00037
   TIGR01458 177 vGkPskeffkealralGvepeeavmiGddlvddvGGaqavGmrgvqv 223
                   k s+e f+ a++   v   e v+  dd v+++  a+++G+r+ +v
  MMETSP1061-20121228|6544_1 396 ATKHSREAFEAAMKIASVTDPETVLFLDDSVKNIRVARSMGIRSFLV 442
                 4699****************************************998 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017     0.068     110     185 ..     364     441 ..     319     443 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00017
   TIGR01990 110 lasasknaklvleklelkdkfdaivdaaevk.kgkPdPeiFlaaaeklgvs.peecigieDaeaGieaikaagilavg 185
                  as+ + a++ l++l+++d f  i+d+++ +  +k   e F aa++   v+ pe ++ ++D+   i+ +++ gi +  
  MMETSP1061-20121228|6544_1 364 TASVRHHAERCLKALGIEDLFVDIIDVKSCNlATKHSREAFEAAMKIASVTdPETVLFLDDSVKNIRVARSMGIRSFL 441
                 5999************************998468999*********99996377788899999999999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1971.59
//
Query:       MMETSP1061-20121228|6547_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|6548_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-12   44.5   0.0      1e-05   23.1   0.0    2.3  2  TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
  ------ inclusion threshold ------
      0.028   11.0   4.5      0.036   10.7   3.1    1.1  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
        1.3    4.3   6.7        1.7    4.0   4.7    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        5.3    3.2  12.8        8.9    2.4   8.9    1.3  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR00530  AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0     1e-08     1e-05      11      83 ..      13      93 ..       7     111 .. 0.74
   2 !   19.2   0.0   1.7e-07   0.00017      89     114 ..     163     188 ..     139     199 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1e-08
   TIGR00530 11 nlpkkkavlvvanHqsnlDiltlsaafa.......pplvfiAKkeLkeipflgillll.tgavfidRenkraiasllkaak 83
                +  + ++ lvv+nH+snl il l               +f+ K +++ +p++gi+ ++  g++ +  +n+   ++ +++ +
  MMETSP1061-20121228|6548_1 13 QKHRWSPRLVVCNHVSNLEILHLLTLPFedsegnpVLPSFVMKSSVFGVPWIGIICRDiLGCIGVHNRNRNRNRNRNRNRQ 93
                44557899*************9876644488886444589**************9875269**997766555555444444 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.7e-07
   TIGR00530  89 gravgvFpeGtrskgrkilefKkGal 114
                 +  +++FpeGt+++g  +l fK+Ga+
  MMETSP1061-20121228|6548_1 163 QGPLVIFPEGTTTNGTCLLDFKAGAF 188
                 45799********************9 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.1   3.5e-05     0.036     215     276 ..      94     156 ..      71     160 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.5e-05
   TIGR02927 215 kpekseakseekpeaaepkaekkeepkpepkaeekapaakaatektaadsspyvtp.lvrkla 276
                 k  +++a+  e+ + ++ +ae +++ + +p+ae++a++++a ++++a ++++ vt  ++ +la
  MMETSP1061-20121228|6548_1  94 KRGDKKANEGETQAKTQAEAETQPQAETQPQAETQATNPDANANANANANANSVTEqILERLA 156
                 333555666666666777777777777777777777777777777766666666642555555 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   4.7    0.0016       1.7     771     823 ..      90     142 ..      75     158 .. 0.39

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0016
   TIGR00927 771 ekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGee 823
                 ++ +++g+++++ege++ k+++e e + +ae + + e ++   + +a+ + + 
  MMETSP1061-20121228|6548_1  90 RNRQKRGDKKANEGETQAKTQAEAETQPQAETQPQAETQATNPDANANANANA 142
                 33333333333333333333333333333333222222222222222222222 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   8.9    0.0086       8.9      64     131 ..      79     152 ..      76     158 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.0086
   TIGR03490  64 nksnseekdeeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqadepnnd......hadqknnnkvdfsdl 131
                 n++ + +++ +++ +k+ +kk + ++ + + + + + +++ + +pqa+ +  +       + + n n v    l
  MMETSP1061-20121228|6548_1  79 NRNRNRNRNRNRNRQKRGDKKANEGETQAKTQAEAETQPQAETQPQAETQATNpdananANANANANSVTEQIL 152
                 44556666777777777777777777777777777777777777777776555443333333444455554445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1090.13
//
Query:       MMETSP1061-20121228|6550_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-15   55.0   0.8    2.2e-15   54.8   0.6    1.1  1  TIGR01018 rpsD_arch: ribosomal protein S4
    0.00024   18.7   0.1    0.00039   18.0   0.0    1.3  1  TIGR01017 rpsD_bact: ribosomal protein S4
    0.00069   16.8   0.0      0.001   16.3   0.0    1.3  1  TIGR00478 tly: hemolysin TlyA family protein


Domain annotation for each model (and alignments):
>> TIGR01018  rpsD_arch: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.6   1.6e-18   2.2e-15      16     160 ..      18     163 ..       1     165 [. 0.87

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 1.6e-18
   TIGR01018  16 hPwekerlerekklvakyglrnkkelWkaetllrkyrraarellala..dekrkkeaeallkrlvrlGildeenaklddvlslkvedvlerrlqtlvykkGlaktikqarqlivhghiavdgrvvtsPsylvkkeeekkidfakssP 160
                   w+ke   r  k++++y ++n+ +      +   + + + +l +l+  d+ r + +++ll++l+ lG+++ + ++l +  ++++  + +rrl  ++ +  +a+t+k a  +i  g i+v  + vt P++lv k+ e+ +++  ss 
  MMETSP1061-20121228|6550_1  18 YSWKKEDNLRVAKIMRRYHIQNRDDYTAYVRICGMVTKLSAKLKTLKhdDPFRIAMTDQLLTKLEDLGLIN-KATSLKNAEDITASAICRRRLPVVMVRLKMAQTLKTAITFIESGQIRVGPHCVTDPAFLVAKNMEDYVTWVDSSK 163
                 578999888999***********99887777777777766666555544999999****************.999******************************************************************999885 PP

>> TIGR01017  rpsD_bact: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.9e-07   0.00039      89     151 ..     106     170 ..      86     177 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.9e-07
   TIGR01017  89 esRLDnvvyrlgfaktraaArQLvsHghilvngkkvdipsyqvkpg..dlisikekskklklvke 151
                  +RL +v++rl +a+t ++A  ++  g+i v  + v+ p+++v ++  d ++  ++sk   +v++
  MMETSP1061-20121228|6550_1 106 RRRLPVVMVRLKMAQTLKTAITFIESGQIRVGPHCVTDPAFLVAKNmeDYVTWVDSSKVRRTVQK 170
                 68*****************************************8872245666666666666665 PP

>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.5e-07     0.001       1      72 [.     108     180 ..     108     181 .] 0.89

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 7.5e-07
   TIGR00478   1 rLdvlLvkrglvesRekakrlilkgevlvnkkkvdkPsalvdkdak..ielvqeelfvsRggeKLkealeefev 72 
                 rL v++v+ +++++ + a + i  g++ v  + v+ P +lv k+ +  ++ v+    v R  +K ++ l++f +
  MMETSP1061-20121228|6550_1 108 RLPVVMVRLKMAQTLKTAITFIESGQIRVGPHCVTDPAFLVAKNMEdyVTWVDSSK-VRRTVQKYNDKLDDFDL 180
                 78999************************************766542288888888.9*******999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1194.50
//
Query:       MMETSP1061-20121228|6557_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1087.34
//
Query:       MMETSP1061-20121228|6561_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-15   51.8   0.0    9.5e-15   51.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.6e-07   26.9   0.0     0.0044   12.9   0.0    2.3  2  TIGR00870 trp: transient-receptor-potential calcium channel protein
    0.00022   18.6   0.1    0.00055   17.3   0.1    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.013   13.5   0.4      0.039   12.0   0.1    1.9  2  TIGR00823 EIIA-LAC: PTS system, lactose-specific IIa component


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   9.3e-18   9.5e-15      17     186 ..     388     557 ..     378     562 .. 0.87

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 9.3e-18
   TIGR03903  17 eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtl...revLaadGaLpaaetgrLmlqvLDalaaahd..aGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                 ++++ va Fr ei++ + L+hPniv +l    ++d l   + e+++   l   ++ + +   +  ++  +  lq   ++   h     ++hRDLkP n+++ +++v    kv DFG++ + p+    ++ t   t+e  Gs  + aPe     +     D+Y++ +i++  L Gk
  MMETSP1061-20121228|6561_1 388 DKQKAVADFRTEISILKSLRHPNIVLMLAYSTTKD-LEVMISELMKCSLLdvfKAHIINGTKMKMKDKIAYALQLAQGMLYLHTckPVIIHRDLKPANLLIDNSGVL---KVADFGLSKIRPDPTRNEKDTFMMTGET-GSYRFMAPEIFLHLSYNETVDVYSYAMILFFLLDGK 557
                 678999***********************999998.888899999987552224556667789999*************9999622579************999875...788**********999899999999995.****************************99888887 PP

>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.3e-06    0.0044     130     158 ..     133     161 ..      99     187 .. 0.87
   2 !   11.7   0.0     1e-05     0.011     130     159 ..     231     260 ..     204     265 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.3e-06
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasve 158
                    ta+++A+ +  + iv+ L+++ga+++
  MMETSP1061-20121228|6561_1 133 DRRTAIHVAASEGHLDIVRYLVQRGARIN 161
                 457************************98 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 1e-05
   TIGR00870 130 kgitalilAihkqnyeivklLlekgasvea 159
                    tal+lA+ + n+ iv+lL + +a+v++
  MMETSP1061-20121228|6561_1 231 DKRTALHLAAGEGNVGIVQLLCMHKANVNI 260
                 557*************************96 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   5.3e-07   0.00055      79     148 ..     444     513 ..     383     525 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 5.3e-07
   TIGR03724  79 iegkklkdlleekel......ellkevGelvgklHkag..ivhgDlttsNiivkddk.lyliDfGLgkkskevedkavD 148
                 i+g+k         +       ++ ++++ +  lH  +  i+h Dl ++N++++++  l + DfGL+k++ +      D
  MMETSP1061-20121228|6561_1 444 INGTK---------MkmkdkiAYALQLAQGMLYLHTCKpvIIHRDLKPANLLIDNSGvLKVADFGLSKIRPDPTRNEKD 513
                 33333.........13333337777888888889976555*************765515688******98776665555 PP

>> TIGR00823  EIIA-LAC: PTS system, lactose-specific IIa component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       3.6   3.7e+03      56      71 ..     103     118 ..      98     120 .. 0.76
   2 ?   12.0   0.1   3.8e-05     0.039      19      75 ..     197     254 ..     187     259 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 3.6
   TIGR00823  56 kllakeaggeelevsl 71 
                 kll+  a g+++++  
  MMETSP1061-20121228|6561_1 103 KLLQAAALGKKMTMDA 118
                 7889999999988765 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.8e-05
   TIGR00823  19 skalealkaakaGdfakakelleeaeeelaeahkaqtkllakeaggeele.vslllvh 75 
                  ka + +kaa +Gdf++ + ll +++ +++e    + + l+  ag++++  v ll +h
  MMETSP1061-20121228|6561_1 197 NKATNFIKAAAEGDFDEVEMLLISGDVDVNEGDYDKRTALHLAAGEGNVGiVQLLCMH 254
                 478889*************************988877777888887777525677777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 2573.79
//
Query:       MMETSP1061-20121228|6555_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1614.67
//
Query:       MMETSP1061-20121228|6556_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 821.27
//
Query:       MMETSP1061-20121228|6565_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 1418.88
//
Query:       MMETSP1061-20121228|6567_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1154.90
//
Query:       MMETSP1061-20121228|6568_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|6570_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 626.95
//
Query:       MMETSP1061-20121228|6562_1  [L=1207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.14s 00:00:00.65 Elapsed: 00:00:00.38
# Mc/sec: 4192.39
//
Query:       MMETSP1061-20121228|6563_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1633.37
//
Query:       MMETSP1061-20121228|6571_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1710.78
//
Query:       MMETSP1061-20121228|6572_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 626.95
//
Query:       MMETSP1061-20121228|6574_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 611.95
//
Query:       MMETSP1061-20121228|6575_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1306.69
//
Query:       MMETSP1061-20121228|6576_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 307.97
//
Query:       MMETSP1061-20121228|6566_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       395  (0.0962945); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1885.56
//
Query:       MMETSP1061-20121228|6580_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 1307.52
//
Query:       MMETSP1061-20121228|6579_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-15   52.2   0.1      2e-14   51.2   0.0    1.4  2  TIGR00430 Q_tRNA_tgt: queuine tRNA-ribosyltransferase
      1e-13   48.8   0.0    1.8e-13   47.9   0.0    1.3  1  TIGR00449 tgt_general: tRNA-guanine transglycosylases, various specificities


Domain annotation for each model (and alignments):
>> TIGR00430  Q_tRNA_tgt: queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.32   6.6e+02     137     165 ..      69      97 ..      58     107 .. 0.82
   2 !   51.2   0.0   9.6e-18     2e-14     268     341 ..     341     416 ..     336     421 .. 0.93

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.32
   TIGR00430 137 imaldectsypadldyaekslertlrWae 165
                 +  +d++   +  +++  k++ r ++W +
  MMETSP1061-20121228|6579_1  69 VSLFDDVDDNEFSRKRKVKAVTRNHQWFR 97 
                 55789999999999999999999999976 PP

  == domain 2    score: 51.2 bits;  conditional E-value: 9.6e-18
   TIGR00430 268 riarngtlfvsegrlkiknakykedtrpvdeeCdCyvCk..nysraylrhlikakellglrlatlhnlrfllrlve 341
                  +ar+ t++ ++g l + + ++ +d +p+ e C+C+vC+  ++sray++hl+ ake++  +l   hnl+ ll+l++
  MMETSP1061-20121228|6579_1 341 ATARKHTALNADGCLDLSDVSFARDPKPLVEGCACFVCRdaRFSRAYIHHLVVAKEMVAEILLFGHNLHCLLQLLR 416
                 57999*********************************8667******************************9986 PP

>> TIGR00449  tgt_general: tRNA-guanine transglycosylases, various specificities
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   8.9e-17   1.8e-13     266     340 ..     340     416 ..     335     420 .. 0.93

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 8.9e-17
   TIGR00449 266 aryarngrllvtegriklknakykeDtrpvdeeCdClvCk..nysraylrhlikanEllglrLateHNlhvllrlie 340
                 a  ar+ ++l ++g + l++ ++ +D +p+ e C+C vC+  ++sray++hl  a+E++   L   HNlh ll+l++
  MMETSP1061-20121228|6579_1 340 AATARKHTALNADGCLDLSDVSFARDPKPLVEGCACFVCRdaRFSRAYIHHLVVAKEMVAEILLFGHNLHCLLQLLR 416
                 5679***********************************8446******************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1655.52
//
Query:       MMETSP1061-20121228|6578_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2175.54
//
Query:       MMETSP1061-20121228|6581_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1776.35
//
Query:       MMETSP1061-20121228|6583_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|6585_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-116  386.4   0.0   3.5e-116  385.5   0.0    1.5  1  TIGR04167 rSAM_SeCys: radical SAM/Cys-rich domain protein
    1.9e-09   34.6   0.0      4e-09   33.6   0.0    1.5  2  TIGR03978 rSAM_paired_1: His-Xaa-Ser system radical SAM maturase HsxB
    1.5e-07   28.7   0.0    3.3e-07   27.6   0.0    1.5  1  TIGR03962 rSAM_MSMEG_1423: mycofactocin radical SAM maturase
    8.2e-07   26.1   0.1    1.6e-06   25.2   0.1    1.4  1  TIGR02668 moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
    1.7e-06   25.1   0.1    2.9e-06   24.3   0.1    1.4  1  TIGR02666 moaA: molybdenum cofactor biosynthesis protein A
    2.4e-06   25.1   0.0    4.1e-06   24.3   0.0    1.4  1  TIGR04078 rSAM_yydG: peptide modification radical SAM enzyme, YydG family
      4e-06   23.5   0.0    6.5e-06   22.8   0.0    1.3  1  TIGR04054 rSAM_NirJ1: putative heme d1 biosynthesis radical SAM protein NirJ1
    3.1e-05   21.2   0.0    5.6e-05   20.3   0.0    1.3  1  TIGR04053 sam_11: radical SAM protein, BA_1875 family
    9.8e-05   19.0   0.0    0.00015   18.4   0.0    1.2  1  TIGR03906 quino_hemo_SAM: quinohemoprotein amine dehydrogenase maturation protein
    0.00011   19.2   0.0     0.0005   17.0   0.0    1.9  2  TIGR04051 rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ
     0.0002   18.7   0.0    0.00031   18.1   0.0    1.2  1  TIGR04055 rSAM_NirJ2: putative heme d1 biosynthesis radical SAM protein NirJ2
    0.00026   17.8   0.0       0.01   12.6   0.0    2.2  2  TIGR04083 rSAM_pep_methan: putative peptide-modifying radical SAM enzyme, Mhun_1560 family
     0.0008   16.1   0.1     0.0029   14.2   0.1    1.8  1  TIGR04163 rSAM_cobopep: peptide-modifying radical SAM enzyme CbpB
     0.0011   15.6   0.0     0.0019   14.8   0.0    1.4  1  TIGR04064 rSAM_nif11: nif11-like peptide radical SAM maturase
     0.0022   15.0   0.0       0.65    6.8   0.0    2.2  2  TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase
     0.0037   13.9   0.0     0.0056   13.3   0.0    1.2  1  TIGR03820 lys_2_3_AblA: lysine-2,3-aminomutase
     0.0056   12.9   0.0      0.009   12.2   0.0    1.3  1  TIGR03913 rad_SAM_trio: Y_X(10)_GDL-associated radical SAM protein
  ------ inclusion threshold ------
      0.013   12.0   0.0      0.019   11.4   0.0    1.2  1  TIGR04103 rSAM_nif11_3: nif11-class peptide radical SAM maturase 3
      0.014   13.2   0.0       0.03   12.1   0.0    1.5  1  TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein


Domain annotation for each model (and alignments):
>> TIGR04167  rSAM_SeCys: radical SAM/Cys-rich domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  385.5   0.0  1.6e-118  3.5e-116       2     298 ..     247     566 .]     246     566 .] 0.91

  Alignments for each domain:
  == domain 1    score: 385.5 bits;  conditional E-value: 1.6e-118
   TIGR04167   2 lkrkkletlqvnlgklCnlsCkHCHveagpkrte.emskevveeilellkksk.iktlDltGGaPelnpefrelveeark...lgkevivRsnltileeegledlaeflaekkvevvaslPcyeeenvdkqRGkgvfeksiealkkLnelGYgkeese.............lelnLvynpegaslppsqkelekeykkeLkekfgieFneLftitnmPigrfaeaLekkgkleeYlelLeeafneetvekvmCrslisvdwdGklydCDFnqmlelklkke....kkktikdl.eeeelekreiavaehCygCtaGaGss 298
                 l+rk+ ++lq+n+g  Cn++C HCHve++p rte +m++++ +++lellk+++ ++tlD+tGGaPeln++fr+lv++ar+   ++  +i+R+nlt+l+e+g+edl +fl+e++v+vvaslPcy++envd+qRG+gvfe+si+al  Lne GYg+++++             l+l+Lvynp ga+lpp+q++l+ +y+k+L+e+fgi F++LftitnmPi+rfa++L+++g+l eY++lL ++fn++tv ++mC ++i+++wdGk+ydCDFnq+l+  +  +      kt+ d+ + ++l++ ++++++hC+gCtaG Gss
  MMETSP1061-20121228|6585_1 247 LQRKSPTVLQINIGLYCNQACGHCHVESSPLRTEeMMTADTAARCLELLKNTPsVTTLDITGGAPELNKHFRYLVSTARAirgRDLIIIDRCNLTVLQEPGQEDLVDFLKEHDVHVVASLPCYSAENVDTQRGNGVFERSIAALLALNEAGYGRNREDehehedasseaprLQLDLVYNPLGAFLPPPQENLQVQYQKQLAENFGILFDQLFTITNMPIKRFADFLHRRGELAEYMDLLVRNFNPDTVGQLMCLDTINIGWDGKIYDCDFNQQLGYAIGVDsihrGGKTVFDIeSLDDLRDVRVRTDNHCFGCTAGMGSS 566
                 789999************************9985278999***********998**********************9998322445699****************************************************************87543222233333444489*****************************************************************************************************998876645446799999966688999******************8 PP

>> TIGR03978  rSAM_paired_1: His-Xaa-Ser system radical SAM maturase HsxB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   1.8e-11     4e-09      58     199 ..     230     367 ..     189     400 .. 0.78
   2 ?   -3.2   0.0       2.5   5.5e+02     342     357 ..     500     515 ..     485     517 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 1.8e-11
   TIGR03978  58 edesaalellasklrkrksflseftalhilvvtlrCnhsCkYCqvsrasedakkfdlseetaekavdlilkspsaslkiEfQGGepllrfdlikkivelaeeknkeekkelefviatnlsllt....deileflkekkvlistSlD 199
                 +d++ + e++a k  k ++  ++ +++  + + l Cn++C  C+v+++  +++++ ++ +ta++ ++l++++ps   ++++ GG p l+    +++v++a++ ++   ++l ++   nl++l+    ++ ++flke++v++  Sl 
  MMETSP1061-20121228|6585_1 230 GDND-Q-ESTAPKSVKPYRLQRKSPTVLQINIGLYCNQACGHCHVESSPLRTEEM-MTADTAARCLELLKNTPS-VTTLDITGGAPELNK-HFRYLVSTARAIRG---RDLIIIDRCNLTVLQepgqEDLVDFLKEHDVHVVASLP 367
                 3333.2.44555666666666777778888999****************999996.************999987.579**********95.56999999988886...8888888889999863333699*************995 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.5
   TIGR03978 342 lnvlvynydGkvYasD 357
                 l+++ + +dGk+Y +D
  MMETSP1061-20121228|6585_1 500 LDTINIGWDGKIYDCD 515
                 67788899*******9 PP

>> TIGR03962  rSAM_MSMEG_1423: mycofactocin radical SAM maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.5e-09   3.3e-07       9     149 ..     250     398 ..     242     402 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.5e-09
   TIGR03962   9 eapicltweltyacnlacvhclsssg.krdeeelstaeakalideleal.rvfyvnvgggeplvrpdflelldyava...rkvgvkfstngvrideevadrla...atdyvdvqisldgataevndavrgagsfdlavraldnlaaagf 149
                 ++p  l  ++   cn ac hc   s   r+ee ++++ a + ++ l++   v  +++ gg p +   f  l+  a a   r++ +    n + ++e+  + l    +++ v v  sl   +ae  d+ rg+g f++++ al  l  ag+
  MMETSP1061-20121228|6585_1 250 KSPTVLQINIGLYCNQACGHCHVESSpLRTEEMMTADTAARCLELLKNTpSVTTLDITGGAPELNKHFRYLVSTARAirgRDLIIIDRCNLTVLQEPGQEDLVdflKEHDVHVVASLPCYSAENVDTQRGNGVFERSIAALLALNEAGY 398
                 689999999************765550566655666667777777776537999******************9886533356666667787777665544433111345577888**************************99988876 PP

>> TIGR02668  moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.1   7.3e-09   1.6e-06      12      84 ..     255     328 ..     248     346 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 7.3e-09
   TIGR02668  12 lRisvtkeCnleCvyCHkeGeeesaeeelsaeeiervvrvakel.GvrkvkltGGEPllRkDleeiierikkee 84 
                 l i++   Cn +C +CH e +  ++ee+++a+   r ++  k+   v+++ +tGG P l k +  ++++ + ++
  MMETSP1061-20121228|6585_1 255 LQINIGLYCNQACGHCHVESSPLRTEEMMTADTAARCLELLKNTpSVTTLDITGGAPELNKHFRYLVSTARAIR 328
                 7899999*******************************99887638***************9999998877655 PP

>> TIGR02666  moaA: molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   1.4e-08   2.9e-06      10      90 ..     253     331 ..     246     397 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.4e-08
   TIGR02666  10 dyLRiSvtdrCnlrCvYCmpeeakleflekeelLtleeierlvklavklg.vekvRlTGGEPllrkdlvelvarlaklegie 90 
                 + L i +   Cn  C +C+ e+     l+ ee++t +  +r ++l+ ++  v+ + +TGG P l+k++  lv++ ++++g +
  MMETSP1061-20121228|6585_1 253 TVLQINIGLYCNQACGHCHVESS---PLRTEEMMTADTAARCLELLKNTPsVTTLDITGGAPELNKHFRYLVSTARAIRGRD 331
                 5678888889**********964...489****************998866**************************99954 PP

>> TIGR04078  rSAM_yydG: peptide modification radical SAM enzyme, YydG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.9e-08   4.1e-06       3      95 ..     255     348 ..     253     387 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.9e-08
   TIGR04078   3 vvinldarcnascdhccfscsptske.alekeeieelveefeknekikvisltGGevlldykfllellkivkslgkdvtlisnGfwglekkkvk 95 
                 + in++  cn  c hc   +sp ++e +++ +     +e +++ +++ ++ +tGG   l+++f + +     + g+d  +i     +  ++  +
  MMETSP1061-20121228|6585_1 255 LQINIGLYCNQACGHCHVESSPLRTEeMMTADTAARCLELLKNTPSVTTLDITGGAPELNKHFRYLVSTARAIRGRDLIIIDRCNLTVLQEPGQ 348
                 679*******************9876156788888999999*******************9998777666677777777776665555555555 PP

>> TIGR04054  rSAM_NirJ1: putative heme d1 biosynthesis radical SAM protein NirJ1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     3e-08   6.5e-06       3     130 ..     256     390 ..     254     399 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3e-08
   TIGR04054   3 vwnvtrtcnlkckhcyaesdekkyedeltteeakkliddlaef.kvpvllfsGGepllredlfelaeyakkrgiratl...stnGtlitk....evakelkkigvgyvGisldGikevndkfrgvkGafeaaleGi 130
                   n+   cn  c hc+ es+  ++e+ +t++ a + ++ l++   v  l ++GG p l + +  l++ a++   r  +     n t++++    + +  lk+ +v  v  sl    ++n + +  +G fe++++ +
  MMETSP1061-20121228|6585_1 256 QINIGLYCNQACGHCHVESSPLRTEEMMTADTAARCLELLKNTpSVTTLDITGGAPELNKHFRYLVSTARAIRGRDLIiidRCNLTVLQEpgqeDLVDFLKEHDVHVV-ASLPCYSAENVDTQRGNGVFERSIAAL 390
                 5688899*********************************9874789999****************999887777655222468888864222256667788888655.578777655544444478898888765 PP

>> TIGR04053  sam_11: radical SAM protein, BA_1875 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.6e-07   5.6e-05       6     149 ..     251     397 ..     247     400 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.6e-07
   TIGR04053   6 kPliviWEvtkACeLaCkHCRAeAqkkrlpeeltteegkklldqiaefgkpkpllvltGGDpleredlvelveyaksk.glrvslsPsvtpkl.....treaikklkeagvkalslslDgataetHdaiRgvaGsfektlkairallelg 149
                 +P ++  ++   C+ aC HC  e  + r++e +t + + + l+ +++  + +  l +tGG p   + +  lv+ a++  g  + +      ++     +++ ++ lke+ v+ +  sl   +ae  d+ Rg  G+fe+++ a+ al+e+g
  MMETSP1061-20121228|6585_1 251 SPTVLQINIGLYCNQACGHCHVESSPLRTEEMMTADTAARCLELLKNTPS-VTTLDITGGAPELNKHFRYLVSTARAIrGRDLIIIDRCNLTVlqepgQEDLVDFLKEHDVH-VVASLPCYSAENVDTQRGN-GVFERSIAALLALNEAG 397
                 566666677778*******************************9999888.688999*****9999******9998641333333333222221111145688999999995.556***************7.*********99998887 PP

>> TIGR03906  quino_hemo_SAM: quinohemoprotein amine dehydrogenase maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.8e-07   0.00015      91     213 ..     250     368 ..     219     389 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.8e-07
   TIGR03906  91 iplktlvlnvntgcnlsctycykedlttPskgkk.lsletakasvelllkeaaerervavvffGGeplsnlkliralveyaeqraaaaGkkvefslttnatllt....eevvdflnehrfGltvsidG 213
                  +   l +n+   cn +c +c+ e   +P +++  ++ +ta + +ell k++++  ++++   GG p  n +  r lv+ a    a  G+++      n t+l     e++vdfl+eh + +  s+  
  MMETSP1061-20121228|6585_1 250 KSPTVLQINIGLYCNQACGHCHVES--SPLRTEEmMTADTAARCLELL-KNTPS--VTTLDITGGAPELNKH-FRYLVSTAR---AIRGRDLIIIDRCNLTVLQepgqEDLVDFLKEHDVHVVASLPC 368
                 4444555677777*********995..676665549**********86.55555..4556667999988855.688887664...6689999988899999996233369**********99998854 PP

>> TIGR04051  rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.3e-06    0.0005       7     138 ..     258     396 ..     251     412 .. 0.80
   2 ?   -0.6   0.0       0.5   1.1e+02      10      50 ..     512     551 ..     507     553 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.3e-06
   TIGR04051   7 nlirrcnlkckhcysvsadvdfkgelstaevlevlddlkef.kvpvlilsGGepllrkdlfeiaararel...glyvalstnGtlideenieriaei..gfd.yvGisldGleathdefrrleGafdealaavrlckea 138
                 n+   cn  c hc+  s+    ++ ++++ + ++l+ lk+  +v +l ++GG p l k +  + + ar++    l++   +n t ++e   e + +   ++d +v  sl   +a + + +r +G f++++aa+ +++ea
  MMETSP1061-20121228|6585_1 258 NIGLYCNQACGHCHVESSPLRTEEMMTADTAARCLELLKNTpSVTTLDITGGAPELNKHFRYLVSTARAIrgrDLIIIDRCNLTVLQEPGQEDLVDFlkEHDvHVVASLPCYSAENVDTQRGNGVFERSIAALLALNEA 396
                 66678*****************9999************987489**********999988777777766421145666789999999876666555411233246679999999999999999****999999877766 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.5
   TIGR04051  10 rrcnlkckhcysvsadvdfkgelstaevlevlddlkefkvp 50 
                   c+++ +  y++  d+ ++g  +  ++ e+lddl++++v+
  MMETSP1061-20121228|6585_1 512 YDCDFNQQLGYAIGVDSIHRGGKTVFDI-ESLDDLRDVRVR 551
                 5699999999***********9887775.789*****9997 PP

>> TIGR04055  rSAM_NirJ2: putative heme d1 biosynthesis radical SAM protein NirJ2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.4e-06   0.00031       5     137 ..     258     397 ..     254     401 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.4e-06
   TIGR04055   5 nttnkcnlackhcyrdagkkaeeelstee.akklideiaka.gfkilifsGGePllrediyeliayatkkglr...vvlgtnGtlite....evakklkeaGvqrvgisldsldaekhdkfrklegafeeavegienlreag 137
                 n+   cn ac hc+ +++    ee+ t++ a + ++ +++  +   l ++GG P l +    l++ a+    r   ++   n t++ e    ++++ lke  v+ v  sl   +ae+ d+ r+ +g fe++++++ +l+eag
  MMETSP1061-20121228|6585_1 258 NIGLYCNQACGHCHVESSPLRTEEMMTADtAARCLELLKNTpSVTTLDITGGAPELNKHFRYLVSTARAIRGRdliIIDRCNLTVLQEpgqeDLVDFLKEHDVHVV-ASLPCYSAENVDTQRG-NGVFERSIAALLALNEAG 397
                 67778**********9999877777776515667777766524566789**********99999999876544110455688898865222256777888887655.6999999999999887.689*****9999999988 PP

>> TIGR04083  rSAM_pep_methan: putative peptide-modifying radical SAM enzyme, Mhun_1560 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.7e-05      0.01       8     133 ..     261     390 ..     254     399 .. 0.75
   2 ?    2.9   0.0     0.042         9     239     301 ..     500     560 ..     486     562 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.7e-05
   TIGR04083   8 lGcpskckycw..sse.ekspvmsietvkdivewlkdfrddkvtftfhGGepllaGadfyrkalellaegladlkeefalqtnlwllt....pelaeilakynvpigssidGpe.eindlqrgegyyektlkgy 133
                 l c+  c +c   ss   ++++m+ +t    +e lk+  +   t+ + GG p l     y   l   a+++  ++  +  ++nl  l+    ++l++ l++++v + +s+     e  d+qrg+g +e++++  
  MMETSP1061-20121228|6585_1 261 LYCNQACGHCHveSSPlRTEEMMTADTAARCLELLKNTPS-VTTLDITGGAPELNKHFRY---LVSTARAIRGRDLIIIDRCNLTVLQepgqEDLVDFLKEHDVHVVASLPCYSaENVDTQRGNGVFERSIAAL 390
                 7799999999733232257899999999999999998764.5689999****99765444...4555666777777777778888775222268****************97641667***********99875 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.042
   TIGR04083 239 lgdtfavGpdGsiypcyrfvGmpeyvlGnvkdkpsledlkeskagklleefkeyvdkeckecs 301
                 l dt+ +G dG+iy c  f     y +G  + +   +++ + ++   l++ +   d++c  c+
  MMETSP1061-20121228|6585_1 500 L-DTINIGWDGKIYDCD-FNQQLGYAIGVDSIHRGGKTVFDIESLDDLRDVRVRTDNHCFGCT 560
                 4.6899**********5.666667888887778888888888888888888888888888875 PP

>> TIGR04163  rSAM_cobopep: peptide-modifying radical SAM enzyme CbpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.3e-05    0.0029      52     209 ..     240     394 ..     216     400 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
   TIGR04163  52 eeldalrfelkpsav.ylnPtercnlncsycyiPeelrrsGkkmsvekllealerlkeyfk.tvl.pegrkprvifhGaePllakeavfaaidaf.addfkfGvqtnatllddeaiefltsrgvsiGlsldaplkevadrtrktwsGkgvydkvvraleklk 209
                 + ++ +r++ k  +v  +n    cn  c +c++ ++  r+ + m+ ++  + le lk+  + t+l   g  p++  h    l++ +   ++ d    d+ +  v  +    +++ ++fl++++v +  sl +  +e  d++r    G+gv+++ + al  l+
  MMETSP1061-20121228|6585_1 240 KSVKPYRLQRKSPTVlQINIGLYCNQACGHCHVESSPLRTEEMMTADTAARCLELLKNTPSvTTLdITGGAPELNKHF-RYLVSTARAIRGRDLIiIDRCNLTVLQEP--GQEDLVDFLKEHDVHVVASLPCYSAENVDTQR----GNGVFERSIAALLALN 394
                 5567788887766652699999**************9999*************9999875413331456666666664.45666666666666541344444443322..2467799************************9....*******999987775 PP

>> TIGR04064  rSAM_nif11: nif11-like peptide radical SAM maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.8e-06    0.0019      66     205 ..     241     378 ..     184     391 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 8.8e-06
   TIGR04064  66 avpelaekeapiatlalfvaqeCnlaCvyCyGkeGeyGagGlmdsatarkavdWlikasGdvkklglaffGGePllnfplikkvveyakq.raeeaekevafsvttnasllddekiaflkenqfkvivsfdG.skdiqdrqr 205
                 +v+  + + +  + l++ +   Cn aC +C+ +     ++ +m+++ta + ++ l+k++ +v +l ++  GG P ln   ++  v  a++ r++        ++t      +++ ++flke++++v+ s+   s++  d qr
  MMETSP1061-20121228|6585_1 241 SVKPYRLQRKSPTVLQINIGLYCNQACGHCHVESSPLRTEEMMTADTAARCLE-LLKNTPSVTTLDIT--GGAPELNKH-FRYLVSTARAiRGRDLIIIDRCNLTVLQEPGQEDLVDFLKEHDVHVVASLPCySAENVDTQR 378
                 333334444445678999999*******************************9.66888999998875..*******65.68888887762333333333344444444456789*************99763566677777 PP

>> TIGR03942  sulfatase_rSAM: anaerobic sulfatase maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0     0.003      0.65       6     150 ..     258     395 ..     253     401 .. 0.76
   2 !    5.9   0.0    0.0055       1.2     249     281 ..     494     526 ..     477     561 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.003
   TIGR03942   6 pvgakCnldCkYCfylekeellekkkkkmseetlekfikeyiasqeaeevefawqGGEPtlaGldfyrkavelqkkyakgkkisnslqtngilln....deWaeffkennflvGisidGpkelhdkyRvtksgkgsfekvmkalklLkk 150
                  +g  Cn +C  C+  +      +++++m+++t  + ++   ++   +  ++   GG P l   +++r +v+  +  + +  i  +   n ++l+    ++ ++f+ke++  v  s+   ++ +     t++g+g fe+ ++al  L++
  MMETSP1061-20121228|6585_1 258 NIGLYCNQACGHCHVESSP---LRTEEMMTADTAARCLELLKNT--PSVTTLDITGGAPELN--KHFRYLVSTARAIRGRDLIIID-RCNLTVLQepgqEDLVDFLKEHDVHVVASLPCYSAEN---VDTQRGNGVFERSIAALLALNE 395
                 57889********876663...3568999999998887644443..345667789******8..89******99999886655554.56777775222268999*********99*98876533...336679*********9999987 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0055
   TIGR03942 249 vhaetCgkelvvEsnGdvysCDhyvypeyklgn 281
                 v + +C +++ +  +G++y CD+  +  y +g 
  MMETSP1061-20121228|6585_1 494 VGQLMCLDTINIGWDGKIYDCDFNQQLGYAIGV 526
                 56678999999************9999999885 PP

>> TIGR03820  lys_2_3_AblA: lysine-2,3-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.6e-05    0.0056     105     217 ..     250     360 ..     210     379 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.6e-05
   TIGR03820 105 rypdrvlflvsntcamycrhctrkrkvgdkdsipskeeikegieyiretpqvrdvllsGGdplllsdelldwilselkaiehveviriGtrvpvvlpyritdelveilkkyhp 217
                 + p  + + +   c   c hc        ++++++ ++  +++e +++tp+v  + ++GG p l  ++ + +++s  +ai+  ++i i      vl     ++lv+ lk ++ 
  MMETSP1061-20121228|6585_1 250 KSPTVLQINIGLYCNQACGHCHVESSPLRTEEMMTADTAARCLELLKNTPSVTTLDITGGAPEL--NKHFRYLVSTARAIRGRDLIIIDRCNLTVLQEPGQEDLVDFLKEHDV 360
                 4566666788899*************************************************98..67899*****************9999999*999*********99864 PP

>> TIGR03913  rad_SAM_trio: Y_X(10)_GDL-associated radical SAM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.2e-05     0.009      13      93 ..     247     332 ..     238     397 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.2e-05
   TIGR03913  13 lkryvpvhvvweitlacdlkclhcgsraghrrpdelntae....clevidslaalgtrevsliggeaylrkdwtqli...rairdhgm 93 
                 l+r  p     +i l c+  c hc   +   r++e+ ta+    cle++++  ++ t +++  gg   l k +  l+   rair  ++
  MMETSP1061-20121228|6585_1 247 LQRKSPTVLQINIGLYCNQACGHCHVESSPLRTEEMMTADtaarCLELLKNTPSVTTLDIT--GGAPELNKHFRYLVstaRAIRGRDL 332
                 678888888999***********************9886433449****999999998876..9999999999888733366766665 PP

>> TIGR04103  rSAM_nif11_3: nif11-class peptide radical SAM maturase 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   8.8e-05     0.019      10      63 ..     258     313 ..     248     403 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.8e-05
   TIGR04103  10 eitlkcnlacqhcgsragqartkelstaea....lnlvqqlaevgikevtliggeafl 63 
                 +i l cn ac hc   +   rt+e+ ta++    l+l+++   v   ++t  gg   l
  MMETSP1061-20121228|6585_1 258 NIGLYCNQACGHCHVESSPLRTEEMMTADTaarcLELLKNTPSVTTLDIT--GGAPEL 313
                 57899********************9987412225566555555544444..444444 PP

>> TIGR02491  NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   0.00014      0.03      25      91 ..     263     328 ..     257     334 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00014
   TIGR02491  25 CkhkCegCfnketwklnagkeftkeeekeiieeledsrlidGltlsGGdPledknveelielvkkvk 91 
                 C+ +C  C+ +++  l++ + +t ++ ++ +e l++++++  l ++GG P  +k    l++ +++++
  MMETSP1061-20121228|6585_1 263 CNQACGHCHVESS-PLRTEEMMTADTAARCLELLKNTPSVTTLDITGGAPELNKHFRYLVSTARAIR 328
                 99*******8766.7899999999**************************99998888877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 2263.81
//
Query:       MMETSP1061-20121228|6587_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1810.14
//
Query:       MMETSP1061-20121228|6589_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|6588_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.75    7.3  12.6       0.91    7.1   8.7    1.0  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein
        3.2    4.6   9.4        3.9    4.4   6.5    1.1  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
        3.7    3.6   8.4        4.3    3.4   5.8    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   8.7   0.00066      0.91     116     237 ..      32     154 ..      18     161 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00066
   TIGR03354 116 ptpetlvtaalqqvsseaseedlddslteagegaaprpapqaasldPlkaldqepasaadlddga......lsaelaeevaealpadlasidaestlepelaplpaaqpapapqeqeqaseav.altaf 237
                 + + +++++   +++ ++ +++ ++  + +++  +p+p+p + +++P++   ++pa   ++d+++      ++a+++e+v+  +++++++  +e+ +e+e+a++p  ++apa++e+  ++ +  + +++
  MMETSP1061-20121228|6588_1  32 EVSTSTTKVPRGGILGKMGMKKKEKVKAAPAPVEEPKPEPVKEEPAPVE---EAPAAE-PVDAPVveeapkEDAPAEEPVE--EEEPVEERESEEPQEEEPAEEPVEEAAPAEEEEVVEEREQpEAAPI 154
                 4445566666777778888888888888888888888888854444444...444333.3333333333555566666665..7777888888888888888877777776666544333332355555 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   6.5    0.0028       3.9      62     165 ..      37     141 ..      18     154 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0028
   TIGR01347  62 gdtvesgevlaelee.ssaaaeaasekskeekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaakaak 165
                  ++v  g +l+++   ++++ +aa+++ +e k e ++++ ++ +ea ++++  +p +++  ke+++++e ve++++ ++   e+ +++e +++  +++a+a++++
  MMETSP1061-20121228|6588_1  37 TTKVPRGGILGKMGMkKKEKVKAAPAPVEEPKPEPVKEEPAPVEEAPAAEPVDAPVVEEAPKEDAPAEEPVEEEEPVEERESEEPQEEEPAEEPVEEAAPAEEEE 141
                 456777888888875355677888888888888878888888888888889999999999999999999999988776654444444444433333333322222 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   5.8    0.0032       4.3     335     388 ..      78     139 ..       5     159 .. 0.41

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0032
   TIGR02442 335 pdeekedes.......eekekeeskkqe....eeepgkddekeedekeeaeeeaesaeevalepa 388
                 p ee +  +       ee++ke+   +e    ee  ++++++e++e+e+aee+ e+    a +++
  MMETSP1061-20121228|6588_1  78 PVEEAPAAEpvdapvvEEAPKEDAPAEEpveeEEPVEERESEEPQEEEPAEEPVEE---AAPAEE 139
                 22222222232223322222221111112111111122222222222222222221...111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 741.87
//
Query:       MMETSP1061-20121228|6593_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|6597_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 607.15
//
Query:       MMETSP1061-20121228|6599_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 229.24
//
Query:       MMETSP1061-20121228|6602_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 907.43
//
Query:       MMETSP1061-20121228|6592_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1101.82
//
Query:       MMETSP1061-20121228|6603_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 547.75
//
Query:       MMETSP1061-20121228|6594_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 2466.55
//
Query:       MMETSP1061-20121228|6604_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 597.09
//
Query:       MMETSP1061-20121228|6591_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-29   99.6   1.9    1.7e-29   99.3   1.3    1.1  1  TIGR00517 acyl_carrier: acyl carrier protein
    7.6e-05   20.6   0.4     0.0001   20.2   0.3    1.2  1  TIGR01688 dltC: D-alanine--poly(phosphoribitol) ligase, subunit 2
    9.3e-05   17.1   0.3    0.00011   16.9   0.2    1.0  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
    0.00042   18.6   0.0    0.00047   18.4   0.0    1.2  1  TIGR04069 ocin_ACP_rel: peptide maturation system acyl carrier-related protein


Domain annotation for each model (and alignments):
>> TIGR00517  acyl_carrier: acyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.3   1.3   1.7e-32   1.7e-29       5      74 ..      35     104 ..      32     106 .] 0.97

  Alignments for each domain:
  == domain 1    score: 99.3 bits;  conditional E-value: 1.7e-32
   TIGR00517   5 iekvkkiikeqlnvdedkvttdasfveDLgaDSLDtvELvmalEeeFdieipdeeAekiatVgdavdyie 74 
                  ++v++ii+e+ + d +kv+ +asfv DLg+DSLDtvEL+ma+EeeFd eip+eeA ki+tVg++v +ie
  MMETSP1061-20121228|6591_1  35 ADRVREIIAENCECDLEKVVDEASFVGDLGLDSLDTVELIMAIEEEFDCEIPEEEAAKISTVGEVVTFIE 104
                 589******************************************************************8 PP

>> TIGR01688  dltC: D-alanine--poly(phosphoribitol) ligase, subunit 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.3   9.8e-08    0.0001       3      53 ..      37      87 ..      35     100 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 9.8e-08
   TIGR01688  3 evLDvLaevaeddvvkenpDvelfeeGllDsfgtveLLLeiqnkldievpi 53
                 v +++ae +e d  k   +  +  +  lDs++tveL+++i++++d e+p 
  MMETSP1061-20121228|6591_1 37 RVREIIAENCECDLEKVVDEASFVGDLGLDSLDTVELIMAIEEEFDCEIPE 87
                57788899998887776666666666669******************9985 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.2     1e-07   0.00011    1289    1379 ..      13     103 ..       2     105 .. 0.41

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1e-07
   TIGR02813 1289 aavasapvksavssldliqiq..svmlevvadktGyptemlelemdmeadlGidsikrveilGtvqdelpdlpelspedlaelrtlGeivsyl 1379
                  +a+a ap+ +a ++  ++  +  + + e++a+      e +  e     dlG+ds+  ve++ ++ +e+    e+  e+ a++ t+Ge+v+++
  MMETSP1061-20121228|6591_1   13 SAAAFAPMVPAGRGQTALFGEqaDRVREIIAENCECDLEKVVDEASFVGDLGLDSLDTVELIMAIEEEFD--CEIPEEEAAKISTVGEVVTFI 103 
                  2333333333333332221110022334444444444444444444445555555555555555555443..233334445555555555443 PP

>> TIGR04069  ocin_ACP_rel: peptide maturation system acyl carrier-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   4.6e-07   0.00047      25      73 ..      53      99 ..      33     103 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.6e-07
   TIGR04069 25 lkeknllgeklglsprdLvlllldvekqFnikipeeeiaegkFstfnni 73
                ++++  +  +lgl   d v l +++e++F  +ipeee a  k st++++
  MMETSP1061-20121228|6591_1 53 VVDEASFVGDLGLDSLDTVELIMAIEEEFDCEIPEEEAA--KISTVGEV 99
                5566667779**************************976..45555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 582.95
//
Query:       MMETSP1061-20121228|6606_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 1297.89
//
Query:       MMETSP1061-20121228|6607_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1742.26
//
Query:       MMETSP1061-20121228|6608_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1649.86
//
Query:       MMETSP1061-20121228|6612_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|6611_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1591.87
//
Query:       MMETSP1061-20121228|6616_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1285.16
//
Query:       MMETSP1061-20121228|6613_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       538  (0.131156); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.14s 00:00:00.62 Elapsed: 00:00:00.31
# Mc/sec: 1537.03
//
Query:       MMETSP1061-20121228|6619_1  [L=804]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-07   27.1   4.9     0.0044   15.0   0.2    7.0  7  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.17     7e+02       2      19 ..     215     232 ..     214     234 .. 0.86
   2 ?    1.1   0.0     0.028   1.1e+02       3      17 ..     279     293 ..     277     308 .. 0.80
   3 ?   -0.5   0.0     0.088   3.6e+02      19      31 ..     344     356 ..     340     357 .. 0.80
   4 ?    0.8   0.0     0.035   1.4e+02      17      27 ..     383     393 ..     364     395 .. 0.75
   5 ?    2.2   0.0     0.012        51       6      27 ..     413     434 ..     409     436 .. 0.87
   6 !   15.0   0.2   1.1e-06    0.0044       1      29 [.     629     657 ..     629     659 .. 0.94
   7 ?    0.4   0.0     0.047   1.9e+02      16      33 ..     690     707 ..     690     709 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.17
   TIGR00756   2 tyntlisglckagrveeA 19 
                 t +++++g c +g++ eA
  MMETSP1061-20121228|6619_1 215 TLTMIVDGICLRGDPYEA 232
                 7899********998776 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.028
   TIGR00756   3 yntlisglckagrve 17 
                 ++ +i++ +k+gr+e
  MMETSP1061-20121228|6619_1 279 FTNVIRAWAKSGRIE 293
                 778999999999987 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.088
   TIGR00756  19 AlelfdeMkergi 31 
                  +el+deMk + +
  MMETSP1061-20121228|6619_1 344 IEELLDEMKNSSL 356
                 579*****99875 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.035
   TIGR00756  17 eeAlelfdeMk 27 
                 e+A  +++eM+
  MMETSP1061-20121228|6619_1 383 EKAYHVLQEMI 393
                 67888888886 PP

  == domain 5    score: 2.2 bits;  conditional E-value: 0.012
   TIGR00756   6 lisglckagrveeAlelfdeMk 27 
                 +i +l+++g+ e +++l+++++
  MMETSP1061-20121228|6619_1 413 VILALARNGNDERVESLLEQLQ 434
                 6779**************9987 PP

  == domain 6    score: 15.0 bits;  conditional E-value: 1.1e-06
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMker 29 
                 +++ +li++ ++++++ +++ +f eM+++
  MMETSP1061-20121228|6619_1 629 YVFGILIDSWARRKNFTKMEFMFGEMMKE 657
                 5799**********************986 PP

  == domain 7    score: 0.4 bits;  conditional E-value: 0.047
   TIGR00756  16 veeAlelfdeMkergivP 33 
                 ve+++ +  +Mke g+  
  MMETSP1061-20121228|6619_1 690 VEKCEHYISLMKELGLPM 707
                 699**********99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 3316.23
//
Query:       MMETSP1061-20121228|6609_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-99  331.1   0.0    6.7e-99  329.2   0.0    1.9  1  TIGR01328 met_gam_lyase: methionine gamma-lyase
    5.9e-76  253.3   0.1    2.3e-75  251.4   0.0    1.9  1  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
    6.3e-74  247.0   0.0    5.5e-39  131.9   0.0    2.5  2  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
    1.7e-70  235.5   0.0    7.8e-70  233.3   0.0    1.9  1  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
    1.1e-64  216.4   0.0    2.8e-64  215.0   0.0    1.7  1  TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
    4.1e-58  194.7   0.0    1.2e-57  193.1   0.0    1.7  1  TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase
    0.00029   17.6   0.0     0.0056   13.4   0.0    2.0  2  TIGR01141 hisC: histidinol-phosphate transaminase
  ------ inclusion threshold ------
       0.01   12.8   0.0       0.02   11.9   0.0    1.4  1  TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B
      0.021   11.5   0.0      0.047   10.4   0.0    1.5  1  TIGR03947 viomycin_VioD: capreomycidine synthase


Domain annotation for each model (and alignments):
>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.2   0.0  1.5e-101   6.7e-99       3     390 ..      72     509 ..      70     510 .. 0.83

  Alignments for each domain:
  == domain 1    score: 329.2 bits;  conditional E-value: 1.5e-101
   TIGR01328   3 tfetraihagykpkdefgaltppiyqtstfvfesaeqGGnrfa......GeeeGyvysrlgnptvdllerriaelegae........aavatasGmgaiaatllsllkagdevisdetlyGctfalledaltkfgidvkfvd...maspeevkaaikdntkivyfetpanptlklidleavvrvakek.gvk...............vivdntfatplltrpval.GvdvvvhsatkyigGhgdvvaGvliGdaellqrirlvgvkdltGavispfdaflvlrGlktlavrmkresenaekvaeklkehpavekvlypGleehedrdiaakqmkkg.............Ggllafelkg....geadaakllnrlklirlavslGdaetliqhpasmthavvpkeereaaGiseglvrlsvGledvddvladlkqalea 390
                 +f+t++    +++      l pp+y  stf +++a +G            +++G+vysr g pt +    +ia leg +         ++ + sGm+ai++ l+++l++gd+ i   t+yG t+ + e+  + +gi+v++vd   ++ pe+ k+a+k+ntk+vy etpanpt++l dle v rv  e+ g+                v+vd tfatp+ +r +++ Gvdv +hsatky+gGh+d++aG ++   e + +     +k +t   + p d+fl+ rGl+tl vrm+r+ ena k+a++l+ehp ve v+ypGl++h+dr++a      g             Gg+++f++ g    + + a ++ ++l++i+lavslG++e+l++hpasmth ++p+e+r a G+++gl+rlsvGle+++d++ dlk al+ 
  MMETSP1061-20121228|6609_1  72 SFATKCASLYHPNPGAERGLAPPVYFGSTFLLDDAAHGARLHEkreapyTDDDGFVYSRWGAPTNEAAAVQIAALEGVDdpnkgalgKCLLFNSGMSAITSALMAVLRSGDHAIFPYTVYGGTHEFAENFCKEWGIEVTYVDasgVDGPENYKKAFKENTKVVYTETPANPTMRLTDLEGVGRVVTEHyGAAedtpgsdpnarkrpwVMVDGTFATPYHQRVLDItGVDVSIHSATKYLGGHSDILAGSVTSRSEPFLHGCAKVQKLITV-PLNPMDSFLLARGLRTLDVRMQRHGENAIKIARMLEEHPDVESVFYPGLDSHPDRSMADGIYSSGrdeddedgsnqtyGGMVTFIMAGegdvALQRARNVCEHLRVINLAVSLGGVESLVEHPASMTHGMIPREQRLAGGLADGLIRLSVGLEKAKDLVNDLKNALDR 509
                 57777776655555566789****************99876541111224568***********************976333333335999************************************************99833357899******************************9998654311111111222222234449****************779****************************999888888898987.89*******************************************************9743322111122222233339*******98322224567899******************************************************************95 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.4   0.0     5e-78   2.3e-75      21     380 .]      95     507 ..      86     507 .. 0.84

  Alignments for each domain:
  == domain 1    score: 251.4 bits;  conditional E-value: 5e-78
   TIGR01325  21 lyltssyvydsaaeaekrfag......evkgfvysryanPtvkvfeerlalleGae........aavatasGmaailaallallsaGdhvvasrslfGstvvlvseilkrfGvevsfvdatd...lkaWeaalkantkllfletPsnPlaelvdiaalaela.havGak...............lvvdnvfatPvlqqplkl.GadvvvysatkaidGqGrvlGGvilgsee.lieevakllrstGpalspfnaWvllkGletlslrvqkqadsalklaefleeqpkvqavyyaglPdhPqaela.......k..rqqsG....gGtvvafdlkg.....reaafkvldalelvdisnnlGdakslithPattthrrlspeeraalgigdglvrlsvGledvddlkadlkral 380
                 +y  s+++ d aa+ ++   +      +++gfvysr++ Pt ++   ++a+leG +        +++   sGm+ai++al+a+l++Gdh +   +++G t  + +++ k +G+ev++vda+    ++++++a+k ntk+++ etP+nP   l+d++ +  +     Ga                ++vd +fatP  q+ l+  G+dv+++satk++ G+  +l G + ++ e ++++ ak+ +     l p+++++l +Gl tl++r+q++ ++a+k+a +lee+p+v+ v+y+gl +hP+  +a       +      G    +G +v+f ++g      ++a +v + l++++ +  lG + sl+ hPa+ th+ ++ e+r+a g++dgl+rlsvGle+ +dl++dlk+al
  MMETSP1061-20121228|6609_1  95 VYFGSTFLLDDAAHGARLHEKreapytDDDGFVYSRWGAPTNEAAAVQIAALEGVDdpnkgalgKCLLFNSGMSAITSALMAVLRSGDHAIFPYTVYGGTHEFAENFCKEWGIEVTYVDASGvdgPENYKKAFKENTKVVYTETPANPTMRLTDLEGVGRVVtEHYGAAedtpgsdpnarkrpwVMVDGTFATPYHQRVLDItGVDVSIHSATKYLGGHSDILAGSVTSRSEpFLHGCAKVQKLITVPLNPMDSFLLARGLRTLDVRMQRHGENAIKIARMLEEHPDVESVFYPGLDSHPDRSMAdgiyssgRdeDDEDGsnqtYGGMVTFIMAGegdvaLQRARNVCEHLRVINLAVSLGGVESLVEHPASMTHGMIPREQRLAGGLADGLIRLSVGLEKAKDLVNDLKNAL 507
                 789999999999998887765222222579************************8633333333577789*************************************************975112679***************************998776422333321222222333345559***************954**********************999987725566****************************************************************9998333333212111122222257789999988778888999******************************************************************997 PP

>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.9   0.0   1.2e-41   5.5e-39      16     219 ..      87     324 ..      72     340 .. 0.86
   2 !  112.6   0.0   8.6e-36   3.9e-33     269     417 ..     343     507 ..     332     508 .. 0.85

  Alignments for each domain:
  == domain 1    score: 131.9 bits;  conditional E-value: 1.2e-41
   TIGR01326  16 ttksravPiyattsyvfdsaehaaalfgLeel......GniYsrlmnPttdvlekriaaleg......Gv..aalavasGqaaillallnlaeaGdnivsssklYGGtynlfkvtlkrlGievrfvdkdd...leelekaidentkavfletignPkldvlDiekvaevakka................gvplivDntvatpylvrPle.hGadivvhsatkylgGhgtaigGvivds 219
                 +++  a P+y  +++  d+a h+a+l + +e+      G +Ysr   Pt+++   +iaaleg      G+  + l + sG++ai+ al+++ ++Gd+ +   ++YGGt++  +   k+ Giev++vd +    +e+++ka++entk+v++et +nP+++++D+e v +v  ++                   ++vD t+atpy  r l+  G+d+ +hsatkylgGh+  ++G ++ +
  MMETSP1061-20121228|6609_1  87 AERGLAPPVYFGSTFLLDDAAHGARLHEKREApytdddGFVYSRWGAPTNEAAAVQIAALEGvddpnkGAlgKCLLFNSGMSAITSALMAVLRSGDHAIFPYTVYGGTHEFAENFCKEWGIEVTYVDASGvdgPENYKKAFKENTKVVYTETPANPTMRLTDLEGVGRVVTEHygaaedtpgsdpnarkRPWVMVDGTFATPYHQRVLDiTGVDVSIHSATKYLGGHSDILAGSVTSR 324
                 5567789********************9887544444599*********************8665555552246889**************************************************8533359***********************************9988888887777766655333489**************955**********************99865 PP

  == domain 2    score: 112.6 bits;  conditional E-value: 8.6e-36
   TIGR01326 269 lsPfnaflllqGletLslrlerhvenalkvaefLekhpkvkkvnypgLasssehelakkyl............ekgagavlsfevkggke....aakkfidalkLasklanvgDakslvihPastthkqlseeeqlkaGvtkdlirlsvGienidDiiaDleqal 417
                 l+P+++fll++Gl tL +r++rh ena+k+a+ Le+hp+v++v ypgL+s+++ ++a+               ++ +g++++f ++g  +    +a++++++l++++ ++ +g + slv hPas th  +  e++l+ G++ +lirlsvG+e+++D+++Dl++al
  MMETSP1061-20121228|6609_1 343 LNPMDSFLLARGLRTLDVRMQRHGENAIKIARMLEEHPDVESVFYPGLDSHPDRSMADGIYssgrdeddedgsNQTYGGMVTFIMAGEGDvalqRARNVCEHLRVINLAVSLGGVESLVEHPASMTHGMIPREQRLAGGLADGLIRLSVGLEKAKDLVNDLKNAL 507
                 79**************************************************99988754312222222111134589*******9976511115667*****************************************************************98 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  233.3   0.0   1.7e-72   7.8e-70      41     381 ..     124     509 ..     116     510 .. 0.84

  Alignments for each domain:
  == domain 1    score: 233.3 bits;  conditional E-value: 1.7e-72
   TIGR02080  41 raydysrsgnPtrdllekalaelek......Ga..davvtssGmsaiellviallkpddllvaPhdcyGGtyrllkalakkgklkvqlvdqsde...ealekalaekpklvlietPsnPllrvvdiaklcklakaa.gav...............vvvdntflsPilqkPlal.GadlvlhsatkylnGhsdviaGaviakdkqlaeelawwanalGvtgaafdsylllrGlrtlaarvreqernakkiveylqkqplvkkvyypglpdhagheiaa......k.......qqkGfGallsfelkGg....eeevkkflkklklftlaeslGGvesliahpatmthaamekeareeaGikdellrlsvGledaddliadleqalaa 381
                   + ysr g Pt +  +  +a le+      Ga  ++++ +sGmsai+  ++a+l+++d  + P+  yGGt+ + ++  k+  ++v +vd s     e  +ka++e++k+v+ etP+nP +r++d++ + ++  ++ ga+               v+vd tf +P  q+ l + G d+ +hsatkyl Ghsd++aG v ++ +   +  a+    + v   ++ds+ll rGlrtl +r++++ +na ki+ +l+++p v++v+ypgl +h++  +a       +        ++ +G +++f ++G+     ++ ++  ++l++  la slGGvesl+ hpa+mth  + +e r + G+ d l+rlsvGle+a+dl++dl++al  
  MMETSP1061-20121228|6609_1 124 DGFVYSRWGAPTNEAAAVQIAALEGvddpnkGAlgKCLLFNSGMSAITSALMAVLRSGDHAIFPYTVYGGTHEFAENFCKEWGIEVTYVDASGVdgpENYKKAFKENTKVVYTETPANPTMRLTDLEGVGRVVTEHyGAAedtpgsdpnarkrpwVMVDGTFATPYHQRVLDItGVDVSIHSATKYLGGHSDILAGSVTSRSEPFLHGCAKVQKLITVPLNPMDSFLLARGLRTLDVRMQRHGENAIKIARMLEEHPDVESVFYPGLDSHPDRSMADgiyssgRdeddedgSNQTYGGMVTFIMAGEgdvaLQRARNVCEHLRVINLAVSLGGVESLVEHPASMTHGMIPREQRLAGGLADGLIRLSVGLEKAKDLVNDLKNALDR 509
                 5688**********99999999996222211433246899**************************************************98762226799*************************9988764332122111112222223333389**************8659**************************************************************************************************99953333332222111134679********986222245678899****************************************************************975 PP

>> TIGR01329  cysta_beta_ly_E: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.0   0.0   6.1e-67   2.8e-64      36     380 ..     123     509 ..      88     512 .. 0.81

  Alignments for each domain:
  == domain 1    score: 215.0 bits;  conditional E-value: 6.1e-67
   TIGR01329  36 dgeydysrsGnPtrtalesllakleka........eralavssGmaal.dvivrllkagdeiiagddlyGGtdrlltqlksksgvvvvhvdttdl...ekvkavlgdlpktklvllesPtnPlikivdirkiaeaakal..........nedal....vvvdntmlspllcnPlel.GadivlesatkylaGhsdvmaGvlavkseeiakklyflinseGaglaPfdswlllrGiktlairlekqqenavaialfletrsrvaskvryaGlk...............sepdfklhksqakGa.Gavlsfet..Gsva..lskrlveaaklfaitvsfGsvnslismPcklshasidaevrkerdlpedlvrlsvGiedvedlikdlsaalva 380
                 d  + ysr G Pt +a   ++a le +         + l + sGm+a+ ++++ +l++gd+ i    +yGGt+ + + + ++ g+ v++vd + +   e+ k++++  ++tk+v+ e+P+nP ++++d++ + +++ ++          +++a+    v+vd t+ +p + + l++ G+d++++satkyl Ghsd++aG ++++se   +  + ++      l P+ds+ll rG++tl +r+++  ena +ia  le++++v   v y+Gl                 ++d       ++   G v  + +  G+va  +++++ e  ++ +++vs+G v+sl++ P  ++h  i+ e r + +l++ l+rlsvG+e+ +dl++dl++al  
  MMETSP1061-20121228|6609_1 123 DDGFVYSRWGAPTNEAAAVQIAALEGVddpnkgalGKCLLFNSGMSAItSALMAVLRSGDHAIFPYTVYGGTHEFAENFCKEWGIEVTYVDASGVdgpENYKKAFK--ENTKVVYTETPANPTMRLTDLEGVGRVVTEHygaaedtpgsDPNARkrpwVMVDGTFATPYHQRVLDItGVDVSIHSATKYLGGHSDILAGSVTSRSEPFLHGCAKVQKLITVPLNPMDSFLLARGLRTLDVRMQRHGENAIKIARMLEEHPDVE-SVFYPGLDshpdrsmadgiyssgRDED--DEDGSNQTYgGMVTFIMAgeGDVAlqRARNVCEHLRVINLAVSLGGVESLVEHPASMTHGMIPREQRLAGGLADGLIRLSVGLEKAKDLVNDLKNALDR 509
                 33356********************996655444446899*******9356788*************************************98752226899***9..899*********************999987633322222211222134449*****************9***********************************************************************************888.9*******6666666666666431122..2222233330444444442266652267889999999***********************************************************975 PP

>> TIGR01324  cysta_beta_ly_B: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.1   0.0   2.7e-60   1.2e-57      15     376 ..      89     509 ..      84     510 .. 0.81

  Alignments for each domain:
  == domain 1    score: 193.1 bits;  conditional E-value: 2.7e-60
   TIGR01324  15 gsvnPpvqrastvllds..........daasarakdkltyGirGtsttvalqdalaeleGa........agvilyPsGlaavtnallafvkaGdevlvvdsaykPtrrfcdivlkrlgveveyydPk.ig..ediaalikpntkvvfleaPasltlevqdiPaiakaar..............aagv....vvlidntwaagllfkale.hgvdisiqaatkylaGhsdvllGtvaanesavekll.ealyllGqsvdaddaytvlrGlrtlgvrlkrhqesalaiakwleeqkevarvlhPalPsdpghel....fk..r...dfsGss....Glfsvvlkrlsq...kevhafldalklfglgyswGGyeslaln...vqpe.lairrsikrdleGplirlhiGledvddlkadlkaGlea 376
                 + + Ppv  +st lld+            a  +++d ++y + G +t+ a +  +a+leG           ++l+ sG++a+t+al+a++++Gd+ +   ++y  t++f++   k  g+ev+y d   +   e+     k ntkvv++e+Pa  t+ + d+  + ++                +  +     v++d t+a++   + l+  gvd+si++atkyl+Ghsd+l G+v++  + + +   +   l+ +  ++ d + ++rGlrtl vr++rh e+a++ia+ lee+++v+ v++P l s+p+  +    +   r   d  Gs     G+ ++++++ ++   ++  +  ++l++  l+ s GG esl+     ++ + +   + + + l   lirl +Gle+ +dl  dlk+ l++
  MMETSP1061-20121228|6609_1  89 RGLAPPVYFGSTFLLDDaahgarlhekREAPYTDDDGFVYSRWGAPTNEAAAVQIAALEGVddpnkgalGKCLLFNSGMSAITSALMAVLRSGDHAIFPYTVYGGTHEFAENFCKEWGIEVTYVDASgVDgpENYKKAFKENTKVVYTETPANPTMRLTDLEGVGRVVTehygaaedtpgsdpN--ArkrpWVMVDGTFATPYHQRVLDiTGVDVSIHSATKYLGGHSDILAGSVTSRSEPFLHGCaKVQKLITVPLNPMDSFLLARGLRTLDVRMQRHGENAIKIARMLEEHPDVESVFYPGLDSHPDRSMadgiYSsgRdedDEDGSNqtygGMVTFIMAGEGDvalQRARNVCEHLRVINLAVSLGGVESLVEHpasMTHGmIPREQRLAGGLADGLIRLSVGLEKAKDLVNDLKNALDR 509
                 567899999*****99977777776655566678999**********************96222222223599****************************************************873335799999***********************999877644344444465554331..2333379***************9569***********************998877665552777788999*****************************************************98622224333422244566433338889999776551115667899******************9641113333344667788899999*******************99876 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.2e-05    0.0056      84     168 ..     169     255 ..     161     262 .. 0.84
   2 ?    1.8   0.0     0.041        19     309     340 ..     467     498 ..     460     505 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
   TIGR01141  84 lielliraflepgdavlvleptys.mYevsakiagaevkevplked.gqedleavleaakekvklvflasPnnPtGnllkreeiekv 168
                 +i+  ++a+l +gd+++++   y   +e   ++++   +ev + +  g +  e+ ++a ke++k+v+  +P nPt  l + e + +v
  MMETSP1061-20121228|6609_1 169 AITSALMAVLRSGDHAIFPYTVYGgTHEFAENFCKEWGIEVTYVDAsGVDGPENYKKAFKENTKVVYTETPANPTMRLTDLEGVGRV 255
                 577788999**********99996478888888888888888877778899999999******************888877776666 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.041
   TIGR01141 309 lekgiivRdlksaeglleeclRitvGtreene 340
                 + +g+i R+++ a gl ++ +R++vG ++ ++
  MMETSP1061-20121228|6609_1 467 MTHGMIPREQRLAGGLADGLIRLSVGLEKAKD 498
                 78999*********************987655 PP

>> TIGR02108  PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.3e-05      0.02     189     276 ..     157     244 ..     143     255 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.3e-05
   TIGR02108 189 tgkklfyipglaevtdelkarlegadlvlvDGtlwrDdemlkagvgektgrrmGhvaisgegGslevlakleiarkvlihinntnPiL 276
                  gk+l++ +g++++t +l+a l++ d  ++  t++  +     +  +  g ++ +v  sg +G  ++ + ++ + kv+     +nP +
  MMETSP1061-20121228|6609_1 157 LGKCLLFNSGMSAITSALMAVLRSGDHAIFPYTVYGGTHEFAENFCKEWGIEVTYVDASGVDGPENYKKAFKENTKVVYTETPANPTM 244
                 579*************************************************************999999999999988888888876 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0001     0.047      77     164 ..     165     252 ..     149     264 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0001
   TIGR03947  77 GsseaiylvltallrPGdevvvvdpayhslselavalgakvrrwplaaerdfrpd.lddlralvtdrtrlvvvnfPhnPtGasvderel 164
                     ai  +l a+lr Gd+ +    +y   +e+a    +k   + ++ ++   +d +++ ++  ++ t++v    P nPt +  d ++ 
  MMETSP1061-20121228|6609_1 165 SGMSAITSALMAVLRSGDHAIFPYTVYGGTHEFAENF-CKEWGIEVTYVDASGVDgPENYKKAFKENTKVVYTETPANPTMRLTDLEGV 252
                 4456999**********************99999875.4444445554444444428899999*****************887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.46
# Mc/sec: 1489.18
//
Query:       MMETSP1061-20121228|6623_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1795.05
//
Query:       MMETSP1061-20121228|6620_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 749.94
//
Query:       MMETSP1061-20121228|6624_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 637.95
//
Query:       MMETSP1061-20121228|6614_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1568.78
//
Query:       MMETSP1061-20121228|6622_1  [L=1178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.27s 00:00:00.62 Elapsed: 00:00:00.50
# Mc/sec: 3109.66
//
Query:       MMETSP1061-20121228|6628_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|6629_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|6625_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1744.14
//
Query:       MMETSP1061-20121228|6631_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.8   1.5        1.1    6.1   0.1    2.1  2  TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ


Domain annotation for each model (and alignments):
>> TIGR03994  rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.1   0.00027       1.1      82     102 ..     151     171 ..     113     177 .. 0.76
   2 ?    5.1   0.1   0.00053       2.2      82     101 ..     210     229 .]     189     229 .] 0.82

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00027
   TIGR03994  82 eeeyslYvgiPFCptrClYCs 102
                   e++l +g  FC   C++Cs
  MMETSP1061-20121228|6631_1 151 DPETALHIGENFCRESCSFCS 171
                 35789***************9 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00053
   TIGR03994  82 eeeyslYvgiPFCptrClYC 101
                  e++ + vg  +Cp  C+YC
  MMETSP1061-20121228|6631_1 210 VEGTVVHVGEHYCPESCAYC 229
                 5688899************* PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1373.89
//
Query:       MMETSP1061-20121228|6633_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 510.74
//
Query:       MMETSP1061-20121228|6626_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-112  374.9   6.8   1.3e-112  374.7   4.7    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    6.1e-79  264.0   5.2    7.7e-79  263.6   3.6    1.0  1  TIGR02053 MerA: mercuric reductase
    2.4e-66  221.9   3.9    3.1e-66  221.6   2.7    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    5.3e-59  198.4   2.4      7e-59  198.0   1.7    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    2.6e-57  192.5   1.8    3.6e-57  192.0   1.2    1.2  1  TIGR03452 mycothione_red: mycothione reductase
    4.7e-37  125.8   0.5    6.9e-37  125.2   0.3    1.2  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    3.5e-34  116.0   2.5    6.1e-34  115.2   1.7    1.3  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    2.1e-17   60.9   0.1    6.3e-17   59.3   0.1    1.7  1  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    5.5e-10   36.3   1.0    1.6e-05   21.7   0.0    2.8  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      9e-09   32.1   0.1      9e-09   32.1   0.1    1.5  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    7.9e-07   25.8   2.1     0.0034   13.8   0.0    2.3  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    0.00076   16.4   0.8     0.0084   13.0   0.2    2.2  2  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0033   14.1   1.3        2.2    4.8   0.0    3.1  3  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0056   13.3   0.0      0.011   12.3   0.0    1.5  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  374.7   4.7  4.3e-115  1.3e-112       2     458 ..      49     524 ..      48     526 .] 0.91

  Alignments for each domain:
  == domain 1    score: 374.7 bits;  conditional E-value: 4.3e-115
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvekeklGGtClnvGCiPtKalLksaevveelke...akelgievenvkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklldkkevevkkekkekkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklkkkg.vkiltnakvteve...keedevv...veakkk.evetleaekvLvavGrkpnleelgleklgveldergaikvdeelrt........nvpgiyaiGDvigklmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeqa....keegievkvgkfpfaangkalaleetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaikeaalaalgka 458
                 +dv viG G gG  aA ++  +gl++a+    ++GGtC+n+GC+P+KalL+++  v+e+++   +k+lgiev +v+++ e + ++ ++  ++++g ++  l   + +vi+G++ l+++   evk+e++ k+++ k+ii+A Gs p  +p+ + +de++v ts++alel  vpe ++i+G+G+iG+Ef+ +++ lG++vt ie++d+++p++d+e++k++++ l ++  ++  t+   +ev+     e+ v+   + ak k +vet+e+++ +va Gr pn+ ++gle  g+e+++ g+++v+e++++         +p++y iGD++gk+mLAh As++g+ a+e+i+g+++ e+d++a+P++ +t+Pe+++vG teeqa     +eg  +  ++ +f+an+kala +e +G++kv+++k+tg+++ +hi+g +a++li+e a av++++tv+el++++h+HPtlsE++ ea++ a+g+ 
  MMETSP1061-20121228|6626_1  49 FDVAVIGCGVGGHGAALHSRAQGLSTAVFAGGDVGGTCVNRGCVPSKALLAASGRVREMQDtdhLKSLGIEVGEVTYSREGIAAHAKNLANRVKGNLENSLVALGCDVIEGRGMLTGN-AQEVKDEATGKVYKCKDIILAPGSIPFVPPG-VTVDEQTVYTSDGALELGFVPEWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMDKLMPTFDREIAKQAERLLIRDRpIDYRTGVFASEVTpgiPGEKPVTikmIDAKTKeHVETIEVDAAMVATGRVPNTANMGLEDRGIETNR-GFVNVNEKMQVlrgpdsdeVIPNLYCIGDANGKMMLAHAASAHGISAIENICGRSH-EVDHNAIPAACFTHPEISMVGPTEEQAiemaEKEGWTLGKSQGSFRANSKALAEGEGNGMAKVLFKKETGHVVAVHIIGLHAADLIQECANAVAAGTTVQELSMMVHTHPTLSEVMDEAFKGAVGMS 524
                 8****************************************************99988875334899***********************************************9987.5599999988*********************.999999*****************************************************************99887799887765554431115566676556555555579*****************************665.*********98444444435899******************************886.9************************9733225567888889999*****************************************************************************999876 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.6   3.6   2.6e-81   7.7e-79       1     446 [.      49     513 ..      49     520 .. 0.88

  Alignments for each domain:
  == domain 1    score: 263.6 bits;  conditional E-value: 2.6e-81
   TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlverGilGGtCvnvGCvPSKallraaevaklakkas....vgllaaevevdleelleqkkevveelRkeKYedvlesydavdllegkakfkde.ktvkvdlgkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellae.eGvevvksakvkavskrngg.....kklvtvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrt........snpkiyAAGDvikglqlesvAakeGvvaAenalggaeakldlevlPkvvFtdPevAsvGlteeela....kagievesrtvkleavpralinretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEgl 446
                 +d+++iG G ++  aa++ + +g + ++   G +GGtCvn GCvPSKall+a+   + ++++      g+   ev+ ++e + +++k++ + ++ +  +++++ + ++d++eg++ ++++ ++vk +   +v + k +++A G+ p vP+   ++e +++ts+ +lel  +pe +++iG+g+i++E++ ++  lGsevt ++  ++l+++ ++ei++  e+ll +   ++ ++ + +++v  +  g     +k+++ +++++ +++e+d+ +vAtGR pn++ ++Le  g+++ +rG++ v+ek++           p++y  GD  ++++l ++A+++G  a en+ g   +++d +++P++ Ft+Pe+  vG tee+++    k+g +   +  +  a ++al+++e +G+ K+  +ket++v++v++++ +Aa++i+e a a+ ag tv++l  ++h+++t++E +
  MMETSP1061-20121228|6626_1  49 FDVAVIGCGVGGHGAALHSRAQGLSTAVFAGGDVGGTCVNRGCVPSKALLAASGRVREMQDTDhlksLGIEVGEVTYSREGIAAHAKNLANRVKGNLENSLVA-L-GCDVIEGRGMLTGNaQEVKDEATGKVYKCKDIILAPGSIPFVPPGVTVDEQTVYTSDGALELGFVPEWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMDKLMPTFDREIAKQAERLLIRdRPIDYRTGVFASEVTPGIPGekpvtIKMIDAKTKEHVETIEVDAAMVATGRVPNTANMGLEDRGIET-NRGFVNVNEKMQVlrgpdsdeVIPNLYCIGDANGKMMLAHAASAHGISAIENICG-RSHEVDHNAIPAACFTHPEISMVGPTEEQAIemaeKEGWTLGKSQGSFRANSKALAEGEGNGMAKVLFKKETGHVVAVHIIGLHAADLIQECANAVAAGTTVQELSMMVHTHPTLSEVM 513
                 599***********************************************99877766666654555777888899999999999999999998877666665.6.49*********97526787777778888888************9999********************************************************************9977368*****99999998654440111156677778888899**************************76.58*********963333322235899****************************9.699*************************975222267888889999999*******************************************************************976 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.6   2.7     1e-68   3.1e-66       1     440 [.      47     511 ..      47     515 .. 0.87

  Alignments for each domain:
  == domain 1    score: 221.6 bits;  conditional E-value: 1e-68
   TIGR01424   1 ydydlfviGaGsGGvraarlaaalGakvaiaeedlvGGtcvirGcvPkkllvyasefaeeleda...kgyGwevekaefdwkkllakkdkeiarlsglykkllakagvellegraelvda.ntvevledgktytaekiliavGgrp.vkpelPGaelai.tsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeel.eerGirillktvlksiekvddG.....lkvtls.......kdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdey........srtsvpsiyavGdvtdrinltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekftddievy...raefrPmkatlsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssae 440
                 yd+d+ viG+G GG  aa  + a+G   a+     vGGtcv rGcvP k l+ as    e++d+   k+ G ev+++ +  + + a+ ++   r++g   + l   g +++egr+ l ++ ++v+  + gk y  + i++a G+ p v p +   e ++ tsd a++l  +P+ ++++G+Gyi+ ef++++  lG++vt +   +k++  fd ++ ++ ++ l  +r i   +     +++    G     +k   +       + e+i+ d+ ++atGrvPn+ ++gle+ G+e+n  g + v+e         s   +p++y +Gd+  ++ l+  a   + + +e    ++  ++dh+ + +a f++Pe+++vG +ee+a e + ++  ++   + +fr   ++l+  +   + k++ ++++ +v+ +h++G  aa++iq  a a+ aG+t ++    v  hP+++e
  MMETSP1061-20121228|6626_1  47 YDFDVAVIGCGVGGHGAALHSRAQGLSTAVFAGGDVGGTCVNRGCVPSKALLAASGRVREMQDTdhlKSLGIEVGEVTYSREGIAAHAKNLANRVKGNLENSLVALGCDVIEGRGMLTGNaQEVKDEATGKVYKCKDIILAPGSIPfVPPGVTVDEQTVyTSDGALELGFVPEWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMDKLMPTFDREIAKQAERLLiRDRPIDYRTGVFASEVTPGIPGekpvtIK---MidaktkeHVETIEVDAAMVATGRVPNTANMGLEDRGIETNR-GFVNVNEKmqvlrgpdSDEVIPNLYCIGDANGKMMLAHAASAHGISAIEN-ICGRSHEVDHNAIPAACFTHPEISMVGPTEEQAIEMAEKEGWTLgksQGSFRANSKALAEGEGNGMAKVLFKKETGHVVAVHIIGLHAADLIQECANAVAAGTTVQELSMMVHTHPTLSE 511
                 9******************************************************999999886344789**************99999999*************************98626788888999***************77778887777655*******************************************************99998875378999988888888877665553211233...13334444668899***********************99875.566666541112222266789***********************999885.678999*************************9998876665443222778*******************************************************************998 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.0   1.7   2.4e-61     7e-59       2     445 ..      48     512 ..      47     515 .. 0.87

  Alignments for each domain:
  == domain 1    score: 198.0 bits;  conditional E-value: 2.4e-61
   TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveekklGGtcvnvGcvPkkvmwyaaslaelleda...adyGfksekenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkde.tv..evngkeytakhiliatGgkpsipeniPGael.gldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveel.ekaglevhklskvvkvektveg..klvitledg.....keiedvdeliwaiGrkpntkdlglekvgvkldekgyikvde.yq.......ntnvegiyalGdvvGkveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvyks..sftamyyaltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtssee 445
                 ++d+ viG G GG  +a  +   G  +++  + ++GGtcvn GcvP k +  a+  +  ++d+   +  G+++  e +++ + +  + ++  +r++g  +++l     ++ieG   +t++   v  e  gk y+ k i++a G+ p +p ++   e    +sdg ++l  +P+ v+i+G+Gyi++e++ v+ +lGs+  ++   ++ + +fd  i+++    l ++  ++  +     +v   + g   ++i++ d+      e+ +vd+ + a+Gr+pnt ++gle+ g++++ +g+++v+e  q       + +++++y++Gd  Gk+ l+  a a G    e + +  + +++d++ +P+  f+hPei+ vG te++aie   ke   + ks  sf a   al++   +   k++   +   vv +hiiGl +++l+q  a a+  G+t  ++   v  hPt se 
  MMETSP1061-20121228|6626_1  48 DFDVAVIGCGVGGHGAALHSRAQGLSTAVFAGGDVGGTCVNRGCVPSKALLAASGRVREMQDTdhlKSLGIEVG-EVTYSREGIAAHAKNLANRVKGNLENSLVALGCDVIEGRGMLTGNAqEVkdEATGKVYKCKDIILAPGSIPFVPPGVTVDEQtVYTSDGALELGFVPEWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMDKLMPTFDREIAKQAERLLiRDRPIDYRTGVFASEVTPGIPGekPVTIKMIDAktkehVETIEVDAAMVATGRVPNTANMGLEDRGIETN-RGFVNVNEkMQvlrgpdsDEVIPNLYCIGDANGKMMLAHAASAHGISAIENICG--RSHEVDHNAIPAACFTHPEISMVGPTEEQAIEMAEKEGWTLGKSqgSFRANSKALAEGEGNGMAKVLFKKETGHVVAVHIIGLHAADLIQECANAVAAGTTVQELSMMVHTHPTLSEV 512
                 5899**************************************************99888886511156788887.557*************************************99987644422677888*****************777665541579******************************************************9987665514456777777777888777766323566666664444456778999*********************986.79999876244333332256789**********************999999877..56789*****************************9998777665338*******************************************************************9995 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.0   1.2   1.2e-59   3.6e-57       2     450 ..      48     518 ..      47     520 .. 0.82

  Alignments for each domain:
  == domain 1    score: 192.0 bits;  conditional E-value: 1.2e-59
   TIGR03452   2 hydliiiGtGsGn..silderfedkriaivekGtfGGtclnvGciptkmfvyaaevakevkesarl.gidaeidsvrwpdivsrvfedridpiaasGeeyrrgdktpnidvyesharfvgr.ktlrte.dgeeitadqvviaaGsrpvipeaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserftela..kkkfdvrlg...rnvtaaeqdddgvtlelddGs......tveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqr........tsaegvfalGdvsspyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeare....aGlditvkvqdygdvayGwamedteglakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpevvenall 450
                 ++d+++iG+G G   + l+ r +  + a+   G  GGtc+n Gc+p+k  + a+   +e++++++l ++  e+ +v ++       ++ +    ++  +  ++  +   dv e +  ++g+ + ++ e +g+ + ++++++a Gs p++p+ ++  + + yt++  + l  +pe + i+G+Gyi lef+ v+ alG++vt +   +kl+ + d +i+++ ++l   ++ +d r+g   ++vt +   ++ vt+++ d +      t+e d  +vatGrvpn+ ++ +e  G+e+ + g v+v+e  +          + +++ +Gd+  + +l h a a      +n+   +  +++dh+ +paa ft+p i++vG te++a e    +G+++     ++   +   a  + +g+ak++ +k+tG+++  hiiG +a+ liq+  +a+a g +++el+      hp+l+ev+++a+ 
  MMETSP1061-20121228|6626_1  48 DFDVAVIGCGVGGhgAALHSRAQGLSTAVFAGGDVGGTCVNRGCVPSKALLAASGRVREMQDTDHLkSLGIEVGEVTYSREGIAAHAKNLANRVKG--NLENSLVALGCDVIEGRGMLTGNaQEVKDEaTGKVYKCKDIILAPGSIPFVPPGVTVDEQTVYTSDGALELGFVPEWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMDKLMPTFDREIAKQAERLLirDRPIDYRTGvfaSEVTPGIPGEKPVTIKMIDAKtkehveTIEVDAAMVATGRVPNTANMGLEDRGIET-NRGFVNVNEKMQvlrgpdsdEVIPNLYCIGDANGKMMLAHAASAHGISAIENICGRS--HEVDHNAIPAACFTHPEISMVGPTEEQAIEmaekEGWTLGKSQGSFRANSKALAEGEGNGMAKVLFKKETGHVVAVHIIGLHAADLIQECANAVAAGTTVQELSMM-VHTHPTLSEVMDEAFK 518
                 79******99885236788999999**************************************998568899****99865555555445444444..44444556899******99996514455441566799******************9999*************************************************************9998761145566666511134444445567799987665412222278999************************.999****98643122321112345789***************998888888887654..689***********************987622226788877777888888889999999********************************************876.679********99975 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.2   0.3   2.4e-39   6.9e-37       1     465 [.      47     513 ..      47     521 .. 0.79

  Alignments for each domain:
  == domain 1    score: 125.2 bits;  conditional E-value: 2.4e-39
   TIGR01438   1 ydydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGkalkdsk...kyGwnveeqvkhdwekl...skavqdrikslnfsyrvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvl.vrsillrGfdqdcavkvke.ylkeqGvkfkeqvlpkkvek.vea..kvlvkftd...kdntieeeydtvlyaiGrkadlkklnlenvgvkvnk....ksgkila..delertnvpsiyavGdivedkleltpvaikaGklladrlfkdskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeef 465
                 yd+d+ viG+G GG  aa ++ + g   +++        G    +GGtcvn Gc+p k +  a+   ++++d++   + G +v e v +  e +   +k++ +r+k +     val     + i++ + l ++   + ++++ + +++ +k +++a G  p +p  +  + +   tsd  + l  vp    ++G++y+ le +   +alg +vt +     l+  fd+++a++ +   ++++ + ++ +v +  v+  +     v +k+ d   k++  + e d+ + a Gr++++ +++le+ g+++n+     ++k+ +     +   +p++y +Gd +++k+ l+  a   G    + + + s+  vd++ +p++ ft  e++ vG +ee+a+e   +e   + +s+      s +  + +++ +akv+  k+e  +vv +h++G  a++++q  a a+  g + ++l   +  hp+ +e++
  MMETSP1061-20121228|6626_1  47 YDFDVAVIGCGVGGHGAALHSRAQGLSTAVFA-------G--GDVGGTCVNRGCVPSKALLAASGRVREMQDTDhlkSLGIEVGE-VTYSREGIaahAKNLANRVKGNLENSLVALG---CDVIEGRGMLTGNA--QEVKDEATGKVYKCKDIILAPGSIPFVPPGVTVDEQTVYTSDGALELGFVPEWVAIIGSGYIGLEFSDVYTALGSEVTFIeAMDKLMPTFDREIAKQAERlLIRDRPIDYRTGVFASEVTPgIPGekPVTIKMIDaktKEHVETIEVDAAMVATGRVPNTANMGLEDRGIETNRgfvnVNEKMQVlrGPDSDEVIPNLYCIGD-ANGKMMLAHAASAHGISAIENICGRSH-EVDHNAIPAACFTHPEISMVGPTEEQAIEMAEKEGWTLGKSQGSFRANSKALAEGEGNGMAKVL-FKKETGHVVAVHIIGLHAADLIQECANAVAAGTTVQELSMMVHTHPTLSEVM 513
                 8***************9999999998888874.......2..359***********99998888888888876611156777776.5555544411145666666665555555554...44556777776654..4566788999************************99999***************************************87245677889******99875167999**********9998534333334444444100444455678999*******************99996333235565551144566789********.689999999888888666677766665.68********************************999988876555555555666689999976.578999*******************************************986 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   1.7   2.1e-36   6.1e-34      46     465 ..      81     511 ..      47     517 .. 0.77

  Alignments for each domain:
  == domain 1    score: 115.2 bits;  conditional E-value: 2.1e-36
   TIGR01423  46 alggtcvnvgcvpkklmvtgaqymdtlres...agfgweldaesvkanwkaliaaknkavld.indsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqm.lkiegielci.ssneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkql.vangidvrtnenpakveknadgskhvvf........esgkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdey........sktnvdniyaigdvtdrvmltpvainegaavvdtvfaskprktdhtkvasavfsippigvcglveeeaakkyekvavy....essftplmhnisgskykkfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsae 465
                  +ggtcvn gcvp k +++ +  + +++++     +g e+   +     +  iaa+ k +++ ++   e+ +  + g +   g g l  +    v++ a    kv    +++ i+la gs p    ++  +e+ + +s+ a+ l   p+ v ++g gyi +ef+ +   y a g +v+++   d ++  fd e+ k+  + l +   id rt    + v+    g k v++        e  ++++vd  m+a gr+p +  + l+  g+e +++g ++v+e         s   ++n+y+igd  +++ml+  a   g + ++ + + +  + dh  + +a f+ p i ++g +ee+a    ek        + sf    + ++  +  + ++k++ ++  g+v+ vh++g  + ++iq  a ++  ++ + ++   +  hpt +e
  MMETSP1061-20121228|6626_1  81 DVGGTCVNRGCVPSKALLAASGRVREMQDTdhlKSLGIEVGEVTYS---REGIAAHAKNLANrVKGNLENSL-VALGCDVIEGRGMLTGNAQ-EVKDEATG--KV---YKCKDIILAPGSIPFVpPGVTVDEQTVyTSDGALELGFVPEWVAIIGSGYIGLEFSDV---YTALGSEVTFIEAMDKLMPTFDREIAKQAERLLiRDRPIDYRTGVFASEVTPGIPGEKPVTIkmidaktkEHVETIEVDAAMVATGRVPNTANMGLEDRGIE-TNRGFVNVNEKmqvlrgpdSDEVIPNLYCIGDANGKMMLAHAASAHGISAIENICG-RSHEVDHNAIPAACFTHPEISMVGPTEEQAIEMAEKEGWTlgksQGSFRANSKALAEGE-GNGMAKVLFKKETGHVVAVHIIGLHAADLIQECANAVAAGTTVQELSMMVHTHPTLSE 511
                 58************99888776666655551115677777665544...34566666655551445555554.46799999****9987754.55655543..33...56788*********87347777776543999************************976...6779************************9988725678*******************99986333333225567899***********************99.677888887752222222255679*****************************987.57899*************************99999865541111456666666665544.5689***************************************************887 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.1   2.2e-19   6.3e-17      90     431 ..     169     512 ..     163     516 .. 0.74

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 2.2e-19
   TIGR03385  90 vvknnktnekyeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveee.lekkeielrl....neevksvegeekve..vltsgk.....vyqaDlvilavGvkPnsel..ikssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGkdiefkGvlGtsivkfldltiaktGltenelkklnidy......ktvevkakakanYYPgakdlllklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdltelelaYaPPysrv 431
                  vk++ t++ y+     +il++G  p +++  +++ ++v+t +   +       +     e v++iG+Gyigle  +  ++ g evt+ie  +k+ ++++D+eiak  e   ++++ i++r+     e +  + ge+ v   ++  +      ++++D+ ++a+G  Pn+    +++ ++++ ++G++ vnek+q          +v+   + + + +  + lA aa   g  + eni G++ e         + f   +i+ +G te+++  +  +       +    +a++ka    g+ + + k++++k+t +++ + ++G + +   i+  a a+ a+ tv++l ++     P  s+v
  MMETSP1061-20121228|6626_1 169 EVKDEATGKVYK--CKDIILAPGSIPFVPPGVTVDEQTVYTSDGALELGF----V----PEWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMDKL-MPTFDREIAKQAERLlIRDRPIDYRTgvfaSEVTPGIPGEKPVTikMIDAKTkehveTIEVDAAMVATGRVPNTANmgLEDRGIET-NRGFVNVNEKMQVLRG--PDSDEVIPNLYCIGDANGKMMLAHAASAHGISAIENICGRSHEVDHN-AIPAACFTHPEISMVGPTEEQAIEMAEKEgwtlgkSQGSFRANSKAL-AEGEGNGMAKVLFKKETGHVVAVHIIGLH-AADLIQECANAVAAGTTVQELSMMV-HTHPTLSEV 512
                 589999999999..788999999999999999999999999766555544....4....45579******************************9.**********99876258899***97333346666788999886634444431111145789***********9762357767765.68*********96432..23445556666666677788899999999**********96655433.23456799999*******99987443332000010223344444443.456667789*******************9.6678*****************9884.344666655 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.2   4.7e-05     0.014       2      39 ..      50      87 ..      49      93 .. 0.92
   2 !   21.7   0.0   5.5e-08   1.6e-05     134     295 ..     208     391 ..     143     394 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.7e-05
   TIGR01292  2 dviiiGaGpaGltaaiYaaranlktlliegkeaggqlt 39
                dv++iG G +G+ aa+ +  ++l+t+++ g + gg  +
  MMETSP1061-20121228|6626_1 50 DVAVIGCGVGGHGAALHSRAQGLSTAVFAGGDVGGTCV 87
                89********************************9876 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 5.5e-08
   TIGR01292 134 CDgal...fknkevavvGggdsAveealyLskiakkVtlvhrrdklra..ekillerlkkne........kievllnstveeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntell..kel.leldeegyivvdee........mrTsveGvfaaGDvrdkslrQvvtaagdGaiAals 295
                  Dgal   f    va++G+g   +e + + + ++++Vt++   dkl    ++ ++++++           +  v  +++   i G++ v+   i  +++++ e+++vd+  +a G  pnt+ +  ++  +e++ +g++ v+e+        +   ++ ++  GD +  +++ +  a ++G+ A  +
  MMETSP1061-20121228|6626_1 208 SDGALelgFVPEWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMDKLMPtfDREIAKQAERLLirdrpidyRTGVFASEVTPGIPGEKPVTIKMIDAKTKEHVETIEVDAAMVATGRVPNTANMglEDRgIETN-RGFVNVNEKmqvlrgpdSDEVIPNLYCIGDANG-KMMLAHAASAHGISAIEN 391
                 45544334677889***************************999985311233333322221222323335556667777788999999866676667777999***************99761155566666.6*******94444444334579********999.566778888899988765 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1       2.2   6.4e+02     143     168 ..      51      76 ..      43      77 .. 0.88
   2 !   32.1   0.1   3.1e-11     9e-09      90     277 ..     174     371 ..     157     407 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 2.2
   TIGR02374 143 aaviGgGLLGLeaaraLknlGldvsv 168
                  aviG G+ G  aa   +  Gl + v
  MMETSP1061-20121228|6626_1  51 VAVIGCGVGGHGAALHSRAQGLSTAV 76 
                 69************999999999887 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 3.1e-11
   TIGR02374  90 dagrtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllm...akqlDqtagrlLqre.lekkGltvlleketveivkesvekaerlrfkD...GssleadlvvlaaGirPrd.eLa.aeaGlkvndrrGiivndsmqt........sdPdiyavGec 277
                 ++g++ +  ++ila Gs+pf++P    D++ v++       d         +  a+iG+G +GLe +     lG +v  ie + +lm   ++ + + a rlL r    +    v+ ++ t  i +e+  +++ +  k     +++e+d  ++a+G  P++ +++  + G++ n r+ + vn+ mq          +P++y +G+ 
  MMETSP1061-20121228|6626_1 174 ATGKVYKCKDIILAPGSIPFVPPGVTVDEQTVYTS------DGALELGFVPEWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMDKLMptfDREIAKQAERLLIRDrPIDYRTGVFASEVTPGIPGEKPVTIKMIDAKTkehVETIEVDAAMVATGRVPNTaNMGlEDRGIETN-RGFVNVNEKMQVlrgpdsdeVIPNLYCIGDA 371
                 4467777889*************999999998864......33334444556789********************************44445666666666644312233334455566666666664444444333211146899************9834662468***99.88888*****963333322235888888875 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.5   8.4e-05     0.025     211     248 ..      47      85 ..      25     122 .. 0.84
   2 !   13.8   0.0   1.2e-05    0.0034     353     473 ..     219     350 ..     174     372 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.4e-05
   TIGR03140 211 ekydvlvvGgGPagaaaaiyaarkGlkvalvae.riGGq 248
                   +dv v+G G  g  aa+++  +Gl++a+ a   +GG 
  MMETSP1061-20121228|6626_1  47 YDFDVAVIGCGVGGHGAALHSRAQGLSTAVFAGgDVGGT 85 
                 479***************************984256664 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.2e-05
   TIGR03140 353 kkvaviGGGnsGieaaidlaGivehvtvlefadel..kadkvlveklksl....snvdiltsaktkeivg..dgdkvtglkykd.rsseeekkleldGvfvqiGlvpntef..lkda.velnrrGeividerg 473
                   va+iG G  G+e +   + + ++vt +e +d+l    d+ + ++++ l      +d  t + + e++    g+k  ++k+ d +++e+ +++e+d  +v  G vpnt+   l+d  +e ++rG + ++e+ 
  MMETSP1061-20121228|6626_1 219 EWVAIIGSGYIGLEFSDVYTALGSEVTFIEAMDKLmpTFDREIAKQAERLlirdRPIDYRTGVFASEVTPgiPGEKPVTIKMIDaKTKEHVETIEVDAAMVATGRVPNTANmgLEDRgIE-TNRGFVNVNEKM 350
                 569************999999*************94423555555554432222345555555555554311244666666666155566799****************86235666355.456777777765 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   2.9e-05    0.0084       1      33 [.      49      81 ..      49     159 .. 0.76
   2 ?    1.5   0.0     0.086        25     367     390 ..     344     370 ..     340     390 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.9e-05
   TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiiaaGq 33
                fDv++iG G+ G  +al+   +G  ta+ a G 
  MMETSP1061-20121228|6626_1 49 FDVAVIGCGVGGHGAALHSRAQGLSTAVFAGGD 81
                9****************************9986 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.086
   TIGR03378 367 vktdaklrvsk...agktienLyaiGa 390
                 v++++k++v +   + ++i nLy+iG 
  MMETSP1061-20121228|6626_1 344 VNVNEKMQVLRgpdSDEVIPNLYCIGD 370
                 678888888763326899*******96 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.05        15     133     178 ..      48      94 ..      39     125 .. 0.72
   2 !    4.8   0.0    0.0076       2.2     136     167 ..     221     252 ..     216     258 .. 0.93
   3 ?    4.3   0.1      0.01         3     369     412 ..     307     351 ..     290     392 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.05
   TIGR01316 133 kkkvaviGaGpaGlavaselakkGhevtvfealhkpGGvlayG.ipe 178
                 ++ vaviG+G  G   a +   +G +  vf   +  G  +  G +p 
  MMETSP1061-20121228|6626_1  48 DFDVAVIGCGVGGHGAALHSRAQGLSTAVFAGGDVGGTCVNRGcVPS 94 
                 578**************999999*******98888887777763454 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0076
   TIGR01316 136 vaviGaGpaGlavaselakkGhevtvfealhk 167
                 va+iG+G  Gl  ++  +  G evt  ea++k
  MMETSP1061-20121228|6626_1 221 VAIIGSGYIGLEFSDVYTALGSEVTFIEAMDK 252
                 9****************************988 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.01
   TIGR01316 369 deevkleadavivaiGqeank..iiaedsslktskrGtivvdedle 412
                 ++  ++e+da +va G+ +n   +  ed +++t+ rG + v+e+++
  MMETSP1061-20121228|6626_1 307 EHVETIEVDAAMVATGRVPNTanMGLEDRGIETN-RGFVNVNEKMQ 351
                 44568************99972245688888875.89*****9876 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.8e-05     0.011       3      33 ..     221     251 ..     219     267 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.8e-05
   TIGR03026   3 iavvGlGYvGlplaallaekgheVvgvDidk 33 
                 +a++G GY+Gl  + ++++ g eV++++  +
  MMETSP1061-20121228|6626_1 221 VAIIGSGYIGLEFSDVYTALGSEVTFIEAMD 251
                 89************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 1693.32
//
Query:       MMETSP1061-20121228|6630_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2789.98
//
Query:       MMETSP1061-20121228|6637_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       300  (0.0731351); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 2361.91
//
Query:       MMETSP1061-20121228|6635_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 785.34
//
Query:       MMETSP1061-20121228|6634_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1288.47
//
Query:       MMETSP1061-20121228|6641_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.3    5.0  12.0        4.9    4.8   8.3    1.3  1  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   8.3    0.0012       4.9     110     146 ..      13      51 ..       2      71 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0012
   TIGR04032 110 eanlvavvavaavlavvvvaaVAvatvalaavavnp..a 146
                  a +vav a++ ++ + v a+VAv++v++a+vav p   
  MMETSP1061-20121228|6641_1  13 TARFVAVDATVDAVDATVDATVAVDVVVVAVVAVAPlaS 51 
                 567788888888899999999999999999999998542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       382  (0.0931253); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 406.97
//
Query:       MMETSP1061-20121228|6640_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 683.94
//
Query:       MMETSP1061-20121228|6642_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|6639_1  [L=703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   45.3   0.0    1.2e-06   25.8   0.0    3.2  3  TIGR03548 mutarot_permut: cyclically-permuted mutatrotase family protein
    1.3e-08   32.2   0.1      0.026   11.5   0.0    4.1  4  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family
  ------ inclusion threshold ------
      0.079   10.3   5.1       0.14    9.6   3.5    1.3  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03548  mutarot_permut: cyclically-permuted mutatrotase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0008       1.1     155     201 ..     169     216 ..     162     222 .. 0.88
   2 !   25.8   0.0   8.5e-10   1.2e-06      72     233 ..     185     348 ..     180     353 .. 0.84
   3 !   16.1   0.0   7.6e-07     0.001     127     234 ..     341     453 ..     329     463 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0008
   TIGR03548 155 pdfPgeaRvqpvavalknelYvfgggdaeaytdgy.ayslkknkWekv 201
                   +P +aR    a +l++ lY fgg +  a ++ + a+s+ +++W  v
  MMETSP1061-20121228|6639_1 169 DGIPPAARSLHAAAILNDVLYCFGGYNGVARVNTFhAFSFADKRWSPV 216
                 56999**********************9999988648********987 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 8.5e-10
   TIGR03548  72 eegivyvgGsneeeslsdvlrlsldekkealivetlpsl..plaldngvatyldgklyvalgnangkpsnklyllnletkeleelpdfPge...aRvqpvavalknelYvfgggdaeaytdgyayslkknkWekvaavlsdeepisllGaasvklneskllviGGvn 233
                 ++ +++ gG n   ++++   +s+ +k+ +  +    s+  p   d  va+ ++++ yv +g    +    ++l++ ++  ++e+  + g+   +R    av   + lYvfgg d +   d   +++ + +W+ v +  ++  p++   a++v    + ++++GG +
  MMETSP1061-20121228|6639_1 185 NDVLYCFGGYNGVARVNTFHAFSFADKRWSPVLPSANSFgpPSPRDRHVAVAFGNSFYVHGGFDGTSRVGDFWLFDFSSMCWREVMVLGGRapsPRHSHSAVVHGHCLYVFGGYDGSYKSDLHEFDFISSQWNPVPT--TGRRPRARYRATTVVH-RNYIVLMGGHD 348
                 57799*********************9999556666676658889*****************977777999***************999986557999999998899***************************987..7777877777777754.44555566655 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 7.6e-07
   TIGR03548 127 yvalgnangkp.snklyllnletkeleelp.dfPgeaRvqpvavalknelYvfgggdaeaytdgyayslkkn.....kWekvaavlsdeepisllGaasvklneskllviGGvnk 234
                  v +g ++g+   +  ++++++++ ++ l  +    +R   +av+ +n +Yvfgg++ +a  d y  +l +n     +W++++     +ep+      +v +ne +l+++GG+n 
  MMETSP1061-20121228|6639_1 341 IVLMGGHDGTRhLSDTHVFDIDNRVWSPLVtEGSIVPRDSHIAVSHSNYMYVFGGSSGNALNDLYELQLPQNmsqsaRWRQIKS-SEVNEPLPRFCHVGVVYNE-ALFIFGGYNG 453
                 344555566553567888899988888775144444899999999999999999999999999998887665111114555554.2223444445555555555.5667888874 PP

>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0     0.015        20      49      74 ..     171     196 ..     157     217 .. 0.75
   2 !   10.1   0.0   4.9e-05     0.067      50     129 ..     225     300 ..     209     303 .. 0.85
   3 !    9.8   0.0   6.1e-05     0.083      53     139 ..     279     361 ..     266     372 .. 0.81
   4 !   11.5   0.0   1.9e-05     0.026      52     136 ..     376     461 ..     362     483 .. 0.73

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.015
   TIGR03547  49 fpgaareqavaavvdgklyvFgGvgk 74 
                  p aar+  +aa++++ ly FgG + 
  MMETSP1061-20121228|6639_1 171 IPPAARSLHAAAILNDVLYCFGGYNG 196
                 46678999999************754 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 4.9e-05
   TIGR03547  50 pgaareqavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWekle...trsPvgllGasaveleegkililGGvnk 129
                 p  +r+  va++ ++ +yv gG + +        + d + +d ++ +W++++    r+P     +sav ++++ ++++GG++ 
  MMETSP1061-20121228|6639_1 225 PPSPRDRHVAVAFGNSFYVHGGFDGT------SRVGDFWLFDFSSMCWREVMvlgGRAPSPRHSHSAV-VHGHCLYVFGGYDG 300
                 557899****************9877......446899**********987622268999999***99.************85 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 6.1e-05
   TIGR03547  53 areqavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWeklet..rsPvgllGasaveleegkililGGvn..keiFdkyladi 139
                 +r+   a+v +  lyvFgG + +         +d +++d  + +W+ + t  r P++   a++v ++ + i+++GG +  +++ d ++ di
  MMETSP1061-20121228|6639_1 279 PRHSHSAVVHGHCLYVFGGYDGS-------YKSDLHEFDFISSQWNPVPTtgRRPRARYRATTV-VHRNYIVLMGGHDgtRHLSDTHVFDI 361
                 5677778888999******9887.......56799************99833579999999999.9**********983344555555555 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 1.9e-05
   TIGR03547  52 aareqavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWeklet...rsPvgllGasaveleegkililGGvn.keiFdkyl 136
                 ++r+  +a+   +++yvFgG+  +  +   +++       +++  W+++++   + P     +++v + ++ + i+GG+n  e  ++++
  MMETSP1061-20121228|6639_1 376 VPRDSHIAVSHSNYMYVFGGSSGNALNDLYELQLPQ--NMSQSARWRQIKSsevNEPLPRFCHVGV-VYNEALFIFGGYNgTERLNDFV 461
                 57888899999999******9888644444443322..2356677887765222679999999999.89999999***99335566665 PP

>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.5    0.0001      0.14      31     135 ..      14     125 ..       5     150 .. 0.42

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0001
   TIGR03593  31 kppaaaqqaesqsaa.........aaaaasaaaaasadapsaaaaaaaaaaa.............kritvktdvlrlsidtkGgdidsleLkkyketldkksppvlllsesaerlyvaqsgligkng 135
                 ++++++qq+++q+++         ++++++ +aaa + a            +                     ++  s+ + G  +  leL   ++++ +++      s+s+e+ ++a+s+   +ng
  MMETSP1061-20121228|6639_1  14 QQQQQQQQQQQQQQQqqvssrplaPSDSSTHQAAARQRAL-----------RmnanhhfnhndmaAAAPAAPSHIAHSFRSDGFGLLGLELRMGRSNNSNNN----SSSNSNEMMMIARSNGNNENG 125
                 1111111111111110112233332222222222222222...........133333333333555555555556666666666666666665555444432....234555566666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 2379.19
//
Query:       MMETSP1061-20121228|6638_1  [L=768]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.96
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|6648_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.7   0.0      0.019   12.6   0.0    1.0  1  TIGR02757 TIGR02757: TIGR02757 family protein


Domain annotation for each model (and alignments):
>> TIGR02757  TIGR02757: TIGR02757 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   4.6e-06     0.019      64     122 ..      10      71 ..       1      82 [. 0.68

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.6e-06
   TIGR02757  64 elknaelkslvyRf.....lneeDiqelfetlktlkeehgsleelllkaykkeklleklksllk 122
                 ++ ++ ++  +yR+     l e+ + el+ ++++l+++ g+l+e+ll++  ++  l  l+s+++
  MMETSP1061-20121228|6648_1  10 SQSQSAIP--YYRYegnvqLMEARFLELCSSIRALYRSVGDLREYLLDHPGDDDALLLLQSICE 71 
                 33334555..8887333334678899*********************99988885555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 405.74
//
Query:       MMETSP1061-20121228|6643_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.3    3.6  48.1       0.16    7.5  14.5    2.3  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        2.4    3.5  46.2        1.5    4.1  15.1    2.3  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9  13.7    0.0073        15     754     924 ..     142     320 ..     101     338 .. 0.47
   2 ?    7.5  14.5   7.6e-05      0.16     683     897 ..     343     560 ..     330     602 .. 0.63

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.0073
   TIGR02168 754 lekeleeleeereeleeel.eeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerle......slekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkel.ereleelre 924
                 ++ +  +++ e+e+ ++ + +e++ ++++  +e  e +++++++++e  ++++   + ++e +++++e++++e+++e      +  + +a+ + ++   ++  +++++ i++ +++i+ +e +l+++++e+e+l+ e ++++++ a+l+ ele  + +   +++ ++ + +r+l+ ++e
  MMETSP1061-20121228|6643_1 142 KSPAKRRANSEIESFNSYViSENQLQKDTIAAETREGSETVRTISSESMQQQKPNHRRKNETSATNREVEREENAMEpdmpfgNPPAIAADEKSTVSFSSNDNSQMKKIIQAQNEQINFFEYRLNTQSAEIEKLKRELQQSKRNEAKLELELEIHDVKYSMYDDYRRMMdRRRLDGKNE 320
                 34444444444444433320233333344444444444444444444444444444444444444444444444444211111222334444444555555555555555555555555555555555555555555555555555555555555555544444333331233334444 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 7.6e-05
   TIGR02168 683 eleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveq..leerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt..elkeeaaekeerleslekeiaalekeleeleeqieeleeeieslea.eieeleeeleeleeeleellkekasleealaelree 897
                 +le+  +  e++ +++ ++ ++l+ e +++ +e++  + e+ + ++++s+l ++++r e+ +    le+r++ le+e++++ + ++ ++eel+ea+   +++    +e e   +++k e+++l++++ +le+e+   + +++ ++ ++r++ lek++++   e+  le+q++++e+ i++l++ e+++  e   +l+ +l e+ +++ ++    ++ +++
  MMETSP1061-20121228|6643_1 343 KLERLQKLHEKAKTDAANRYATLQAEYDRVVSEASASKGEKPRDNTNVSSLATNADRTESAAMLllLEKRIKILESENQRYLNDIQRKQEELDEAKYSRNNSTHGADESE--SKAQKLETQTLSNKIVALETEIGftSGQIDNRTRTSRYRALEKNLNEYVIEIMGLEDQLKSKEKIISRLKErELDRNGEPSWKLNPKLYEKVNKRGKTPSSPSAYKSA 560
                 44444444444445555566666666666666677777777777888888888888877776542257788888888888888888888888777654444444444444..444444555566666666666652255555566677888888888888888888888888888888888652555555655577777777777776665555555555 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  12.1   0.00098         2     332     488 ..     146     309 ..     115     331 .. 0.79
   2 ?    4.1  15.1   0.00074       1.5     302     485 ..     339     524 ..     318     535 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.00098
   TIGR02169 332 idklkeeieelere.ieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelk...reldrlleelkrl...eeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelse 488
                  ++ ++eie+++   i e++ +++ + +e +e  e+ +++ +e  + +k +++ ++e+++ ++++e+ ++ +++     +      +e+  +   +++ +++k+ +++ +e+i+ +e +l++  +ei+k +++l+q k + +k+e el+    +++ +++ ++ 
  MMETSP1061-20121228|6643_1 146 KRRANSEIESFNSYvISENQLQKDTIAAETREGSETVRTISSESMQQQKPNHRRKNETSATNREVEREENAMEPDMpfgNPPAIAADEKSTVsfsSNDNSQMKKIIQAQNEQINFFEYRLNTQSAEIEKLKRELQQSKRNEAKLELELEIHDVKYSMYDDYRRM 309
                 567788999988752788999**********************999999999999***999999999999988754121233344555554411167888999999999999******************************9999999999888888876554 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.00074
   TIGR02169 302 aeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkee..leelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieeki..aeleeeleelaeeikkaeqkleqlkedlekaekelrklkeelekleke 485
                 a  +kler ++  e+   da++r a ++ae+d++ +e+ + ++e  + + +  +l ++ +  +    l  l+++++ ++ e+++  +  + ++e+l+++k  +n++    d    ++++   e + l +++ ++e +i  +  + +  +   + ++ e++l++   +   +e++l+ +++ +++l+++
  MMETSP1061-20121228|6643_1 339 AAFSKLERLQKLHEKAKTDAANRYATLQAEYDRVVSEASASKGEKPRDNTNVSSLATNADRTESAamLLLLEKRIKILESENQRYLNDIQRKQEELDEAKYSRNNSTHGADESESKAQK--LETQTLSNKIVALETEIgfTSGQIDNRTRTSRYRALEKNLNEYVIEIMGLEDQLKSKEKIISRLKER 524
                 667899999999*********************************99999999999888766555005567999***************************999999888877444444..4556677777777777622334444455566677777788777777777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       345  (0.0841053); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.46
# Mc/sec: 1916.71
//
Query:       MMETSP1061-20121228|6645_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 981.31
//
Query:       MMETSP1061-20121228|6651_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.17
# Mc/sec: 1063.68
//
Query:       MMETSP1061-20121228|6649_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1828.99
//
Query:       MMETSP1061-20121228|6657_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 665.95
//
Query:       MMETSP1061-20121228|6663_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1061-20121228|6658_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-69  229.7   0.1    1.1e-68  229.4   0.1    1.1  1  TIGR00419 tim: triose-phosphate isomerase
    1.3e-20   71.7   0.1    2.3e-20   70.9   0.0    1.4  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    8.4e-15   52.7   0.0    1.3e-14   52.1   0.0    1.3  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
  ------ inclusion threshold ------
      0.026   11.5   0.1      0.042   10.8   0.1    1.3  1  TIGR01546 GAPDH-II_archae: glyceraldehyde-3-phosphate dehydrogenase, type II


Domain annotation for each model (and alignments):
>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.4   0.1     1e-71   1.1e-68       1     228 []      43     276 ..      43     276 .. 0.97

  Alignments for each domain:
  == domain 1    score: 229.4 bits;  conditional E-value: 1e-71
   TIGR00419   1 lviinfKlnesvgkvelevaklaeevaseagvevavappfvdldvvkdeveseiqvaAqnvdavksGaftGeisAemlkdlGakgvligHsErRsllkeadeliekkvarlkelglksvvCvgetleereaartinnvattaaaaA.......lepdvvAvEPveliGtGkpvskAeaevveksvrdhlkk.vskevaesvrvlyGasvtaaedaelaaqldvdGvLlasavlkae 228
                 +v++n+K+n++v++ +++v+ l++    +++ ev+v p++++++ vk++++ ++ v+ q+v+++  GaftGe+sA+mlkd+G++++l+gHsErR    e++e +++k  ++ + g+k+++C ge le+rea++t + v  + +a A       +e++v+A+EP+++iGtG ++++ +a+  ++ +r++l++ +  +vae+ r+lyG+s +aa +  l a++d+dG+L+++a+lk+e
  MMETSP1061-20121228|6658_1  43 FVGGNWKCNGTVSQTKELVSMLNQST-LTTDTEVVVCPSQIHIQGVKENLRGDVAVGSQDVWTKGNGAFTGETSADMLKDMGIQWTLVGHSERR-EKGESNEQVAAKAKYALDNGIKVLACCGEPLENREAGTTNDFVFPQIKAYAdvftkedWENVVIAYEPIWAIGTGLTATPEQAQDTHAAIRQYLAEiAGSDVAENCRILYGGSANAATAPGLSAKPDIDGFLVGGASLKPE 276
                 699******************99854.467889*************************************************************.889*********************************************************************************************899****************************************97 PP

>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   2.3e-23   2.3e-20       1      94 [.     294     385 .]     294     385 .] 0.95

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 2.3e-23
   TIGR01534   1 kvginGfGRiGrlvlrallekkskdlevvaindl.tdleklayllkyDsvhGrfeeevtvsekkallvngkkvivlaserdpkdlpwkelgvdlv 94 
                 ++ginGfGRiGrlv+ra++++    +++v ind   ++e+++y++k+D++hG+++++v+  +++ + ++g k i++++e dp+++ w ++gvd+v
  MMETSP1061-20121228|6658_1 294 NIGINGFGRIGRLVMRAAQND--PMVNIVGINDPfIGTEYMEYMFKHDTTHGTYSGSVNRVDDNNIEIDG-KIIRVFEEMDPSKIAWGDAGVDYV 385
                 59**************99999..56**********************************999999****9.6999999*********999**987 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   1.2e-17   1.3e-14       2      93 ..     295     385 .]     294     385 .] 0.92

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 1.2e-17
   TIGR01532   2 vaingfgrigrnvlralyesgkraeievvalne.ladaaavayllkydtshgrfakev.kvdrdqlyvnddairvlreselealdwrelgvdlv 93 
                 + ingfgrigr v+ra  + +    +++v +n+ +  ++ ++y+ k+dt+hg +++ v +vd++++ +++  irv++e ++  + w + gvd v
  MMETSP1061-20121228|6658_1 295 IGINGFGRIGRLVMRAAQNDP---MVNIVGINDpFIGTEYMEYMFKHDTTHGTYSGSVnRVDDNNIEIDGKIIRVFEEMDPSKIAWGDAGVDYV 385
                 679*************98877...689*****9668999*****************99457999****************************86 PP

>> TIGR01546  GAPDH-II_archae: glyceraldehyde-3-phosphate dehydrogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   4.1e-05     0.042       1      77 [.     295     371 ..     295     375 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.1e-05
   TIGR01546   1 vginGyGtiGkrvadavikqddmklvGvtkt..spdfeafiakek.GidvyvaaeerlkkfeeaGikveGtvedllekvd 77 
                 +ginG+G iG+ v  a  + + +++vG+       ++  ++ k+      y      +++ ++  i+++G +  ++e++d
  MMETSP1061-20121228|6658_1 295 IGINGFGRIGRLVMRAAQNDPMVNIVGINDPfiGTEYMEYMFKHDtTHGTYSG---SVNRVDDNNIEIDGKIIRVFEEMD 371
                 69**************************9752245666666544403344433...366888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1539.87
//
Query:       MMETSP1061-20121228|6660_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-29   98.3  62.0    2.3e-06   25.1   0.1   14.6 16  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat
  ------ inclusion threshold ------
       0.02   11.9   0.0      0.058   10.4   0.0    1.7  2  TIGR01686 FkbH: FkbH domain


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.18   3.7e+02      17      24 ..      14      21 ..       6      23 .. 0.71
   2 !   12.3   0.0   1.1e-05     0.023      13      26 .]      57      70 ..      52      70 .. 0.87
   3 !    7.0   0.3   0.00053       1.1       1      21 [.      71      90 ..      71      92 .. 0.95
   4 !    5.9   0.0    0.0011       2.3       7      24 ..     102     118 ..      96     120 .. 0.74
   5 !    5.9   1.5    0.0012       2.4       1      26 []     121     145 ..     121     145 .. 0.90
   6 ?   -2.9   0.0      0.65   1.3e+03      19      26 .]     165     172 ..     165     172 .. 0.83
   7 ?   -3.6   0.0       1.1   2.2e+03       4      10 ..     254     260 ..     254     262 .. 0.88
   8 !   17.0   0.3   3.9e-07   0.00081      16      26 .]     294     304 ..     289     304 .. 0.86
   9 !    6.8   0.2   0.00061       1.3      16      26 .]     317     327 ..     314     327 .. 0.91
  10 !   25.1   0.1   1.1e-09   2.3e-06       1      25 [.     328     351 ..     328     352 .. 0.97
  11 !   17.7   0.1   2.3e-07   0.00047       1      25 [.     353     376 ..     353     377 .. 0.85
  12 !    7.3   0.0   0.00042      0.85       1      25 [.     378     401 ..     378     402 .. 0.79
  13 !    6.8   0.0    0.0006       1.2      13      26 .]     439     452 ..     434     452 .. 0.83
  14 !   11.9   0.1   1.6e-05     0.032       1      25 [.     453     476 ..     453     477 .. 0.97
  15 !   11.7   0.0   1.7e-05     0.036       1      26 []     478     502 ..     478     502 .. 0.96
  16 ?   -2.0   0.3      0.35   7.2e+02       1      10 [.     528     537 ..     528     544 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.18
   TIGR02167 17 dTsnVTnM 24
                +++nVT+ 
  MMETSP1061-20121228|6660_1 14 KVKNVTDT 21
                46899986 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 1.1e-05
   TIGR02167 13 lSnfdTsnVTnMss 26
                l  +++s VT+M++
  MMETSP1061-20121228|6660_1 57 LNEWNVSRVTDMKY 70
                566*********97 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.00053
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnV 21
                MF +C s+ + +l  +d+snV
  MMETSP1061-20121228|6660_1 71 MFTSCHSFDQ-PLNAWDVSNV 90
                9*********.*********9 PP

  == domain 4    score: 5.9 bits;  conditional E-value: 0.0011
   TIGR02167   7 sLtsLDlSnfdTsnVTnM 24 
                 ++++ +l  +d+s+V nM
  MMETSP1061-20121228|6660_1 102 AFNQ-PLNEWDVSKVKNM 118
                 5666.7888********* PP

  == domain 5    score: 5.9 bits;  conditional E-value: 0.0012
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMss 26 
                 MF+  +s+++  l  +d+s+V nM +
  MMETSP1061-20121228|6660_1 121 MFQRATSFNQ-SLNDWDVSSVLNMQN 145
                 8999999999.999*********975 PP

  == domain 6    score: -2.9 bits;  conditional E-value: 0.65
   TIGR02167  19 snVTnMss 26 
                 ++V +M++
  MMETSP1061-20121228|6660_1 165 EKVADMTG 172
                 59****85 PP

  == domain 7    score: -3.6 bits;  conditional E-value: 1.1
   TIGR02167   4 gCssLts 10 
                 +C s+ts
  MMETSP1061-20121228|6660_1 254 YCASFTS 260
                 8****98 PP

  == domain 8    score: 17.0 bits;  conditional E-value: 3.9e-07
   TIGR02167  16 fdTsnVTnMss 26 
                 +dTs+VT+Mss
  MMETSP1061-20121228|6660_1 294 WDTSKVTDMSS 304
                 *********96 PP

  == domain 9    score: 6.8 bits;  conditional E-value: 0.00061
   TIGR02167  16 fdTsnVTnMss 26 
                 +d+s VTnM++
  MMETSP1061-20121228|6660_1 317 WDVSGVTNMDN 327
                 *********86 PP

  == domain 10    score: 25.1 bits;  conditional E-value: 1.1e-09
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF+gCss++  +l  +d+s+VT M 
  MMETSP1061-20121228|6660_1 328 MFYGCSSFNH-PLNQWDVSKVTSMQ 351
                 **********.*************7 PP

  == domain 11    score: 17.7 bits;  conditional E-value: 2.3e-07
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF g  ++++  l n+d+s+VTnM 
  MMETSP1061-20121228|6660_1 353 MFEGAIAFNQ-SLNNWDVSEVTNMG 376
                 7888888877.799**********7 PP

  == domain 12    score: 7.3 bits;  conditional E-value: 0.00042
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF+  + +++ +l  +d+s+V nM+
  MMETSP1061-20121228|6660_1 378 MFARAKYFNQ-PLNRWDVSKVKNMT 401
                 6666666666.8899*********7 PP

  == domain 13    score: 6.8 bits;  conditional E-value: 0.0006
   TIGR02167  13 lSnfdTsnVTnMss 26 
                 l  +d+s VT++++
  MMETSP1061-20121228|6660_1 439 LNEWDVSRVTDLRY 452
                 667********875 PP

  == domain 14    score: 11.9 bits;  conditional E-value: 1.6e-05
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MFs+  s+++ +l  ++++nV +M+
  MMETSP1061-20121228|6660_1 453 MFSYTRSFNQ-PLNQWNVANVGTMK 476
                 9*********.*************8 PP

  == domain 15    score: 11.7 bits;  conditional E-value: 1.7e-05
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMss 26 
                 MF++  ++++ +l+ +d+s+V  Ms+
  MMETSP1061-20121228|6660_1 478 MFRDARAFNQ-PLDEWDVSKVKSMSE 502
                 9*********.**********99996 PP

  == domain 16    score: -2.0 bits;  conditional E-value: 0.35
   TIGR02167   1 MFsgCssLts 10 
                 MFs+ +s+++
  MMETSP1061-20121228|6660_1 528 MFSSAESFNQ 537
                 9999999875 PP

>> TIGR01686  FkbH: FkbH domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.8e-05     0.058      54     100 ..     131     175 ..     120     185 .. 0.89
   2 ?   -2.6   0.0      0.25   5.1e+02     156     201 ..     380     425 ..     360     453 .. 0.62

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.8e-05
   TIGR01686  54 SkNdeddvkevlerrkdsllkaedfsllsiaWePKseslrkiAkklN 100
                 S Nd+d v  vl+  +++   ae f++    W+ Kse+++++   +N
  MMETSP1061-20121228|6660_1 131 SLNDWD-VSSVLNM-QNMFSAAESFNQCLGSWGDKSEKVADMTGIFN 175
                 678986.8899999.9*************************998887 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.25
   TIGR01686 156 kRakkykaevkreelkeasssleeylkkLelsldisklkeeevqRv 201
                  Rak +++  +r ++ +  +  + +++ L ++ +i++ +  +v+  
  MMETSP1061-20121228|6660_1 380 ARAKYFNQPLNRWDVSKVKNMTDTFYRALYFNQSINEWNISHVETT 425
                 5666677777776666666666777777766666666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2689.85
//
Query:       MMETSP1061-20121228|6664_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 1135.11
//
Query:       MMETSP1061-20121228|6665_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.8   0.3      0.019   12.1   0.0    1.4  2  TIGR03476 HpnL: putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR03476  HpnL: putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.1      0.33   1.3e+03     155     175 ..      51      71 ..      42      82 .. 0.67
   2 ?   12.1   0.0   4.7e-06     0.019     157     251 ..     122     213 ..     105     219 .. 0.70

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.33
   TIGR03476 155 aglalllpllalFillqrrgg 175
                 +++ ++++++ +F+l+ +rg 
  MMETSP1061-20121228|6665_1  51 FFIQIISLGAYAFLLVHYRGS 71 
                 456677777777777777665 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.7e-06
   TIGR03476 157 lalllpllalFillqrrgglekie.ralekllaekellalidedarldaalealysrrarvlaaffwqllgwvagalevwlALrl.LGhpvslleal 251
                 l   +++ ++F +++ r+g+  i  ++ ++       +   +  ++ +++    + rr+ v+   ++ l+g v ga  +w A+ l LG p++++ ++
  MMETSP1061-20121228|6665_1 122 LIAYVLIWVAFTCTMTRNGMACIRtQFFGE-----GANGKDEGVEAKQNRGGTRFTRRRDVFVLGVYFLVGIVLGAFGAWSAIDLyLGFPIPFMPII 213
                 555677788888888877774443034444.....223323333333444455677888899999999***************9779******9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1559.87
//
Query:       MMETSP1061-20121228|6667_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-05   19.7  54.1    3.2e-05   19.7  37.5    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    7.8e-05   18.3  68.0    0.00019   17.1  31.4    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0  26.8   6.4e-06     0.013     689     885 ..      39     233 ..      14     236 .. 0.65
   2 !   19.7  37.5   1.5e-08   3.2e-05     681     947 ..      86     352 ..      79     359 .] 0.59

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.4e-06
   TIGR02168 689 eeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkeka 885
                 +e  + i+ele++lk+l  e e+++ee+++l k ++e+ + +s  k  le+ +++ ++++e+++q   +++++ +++ee++++  e++ +l++  ++++ l++++e++k+++ + + ++++ ++el++lkee +  +e  +++e+ + a+e e++el+++ +++ e  ++     + ++e   el +e+ +l +e +
  MMETSP1061-20121228|6667_1  39 QEHRQHISELETKLKDLTAEYETAREERDNLTKIKDEM-EVMSCNKVLLEETTERLRTYKEKVQQMT-DVKDALQREEEAHSRSVEENLRLQNELKNLQPLKKQLEEYKARAVDAEVRFTDCQDELNKLKEETTASAEVTTQMEQYVIAQEAEIKELRRRVQQNDEAKKDSPGVGDGISELNPELMKEMLSLRNENE 233
                 23344455555555555555555555555555555443.3334444444555555555555555544.455555555666666666678899999999999999999999999999999999999999999999999999999999999999999999999999988877777666666666677766666666654 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.5e-08
   TIGR02168 681 ieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeia.alekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerl 947
                 +ee +e++++ +ek++++++  ++l++e e+    +e+  + ++e  ++l+ lkk+le+ ++++  +e r ++ ++el++l+ee ++ +e  ++ e+   ++e+ei+el+++++q  e +k+ +  + +  +el+ el +e+ +++++ e+l++ ++ ++e+ + +le+++e+++  +e+++  + +++ +le  e++l+e + + a+l+++l+e  + +e+ +++l++++kk++  e+ l+e +++ a+l+++l+e+++++++++++l
  MMETSP1061-20121228|6667_1  86 LEETTERLRTYKEKVQQMTDVKDALQREEEAHSRSVEENLRLQNE-LKNLQPLKKQLEEYKARAVDAEVRFTDCQDELNKLKEETTASAEVTTQMEQYVIAQEAEIKELRRRVQQNDE-AKKDSPGVGDGISELNpELMKEMLSLRNENEQLRAFAEkRQEDAVAKLEQNAEDQNMLAERYKVHFLTTKGRLESTETALAESQTSEANLQQELNETTQMREQYKSQLETTKKKLDSTETGLSESQNREANLQQKLNETTQTRDHFKTQL 352
                 555666666666666666665555555555555444444444444.356666666666666666666667777777777777766666666666666666777777777666665443.333444444444444446666666666666666554431444555666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.6  17.5    0.0044       9.1     776     900 ..       6     132 ..       1     135 [. 0.42
   2 !   17.1  31.4   9.3e-08   0.00019     667     900 ..     114     353 ..      98     359 .] 0.65

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0044
   TIGR02169 776 aklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieele...eqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelr 900
                 ++  ++led+e+++++e ++  ++  e  ++  ++ ++ ++e+e +l++l+ e e ++ee+++l +  +e+e    +k  +e++ e l++ +e++++  + + a ++  ee ++   +e  +l++el+
  MMETSP1061-20121228|6667_1   6 EEFSKKLEDVEEHYRKEMLKVERQARERDDTFKQEHRQHISELETKLKDLTAEYETAREERDNLTKIKDEMEvmsCNKVLLEETTERLRTYKEKVQQMTDVKDA-LQREEEAHSRSVEENLRLQNELK 132
                 45555666666666665555555555555555555566666666666666655555555555544433333211134444444444444444443333222222.22222222222222333333333 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 9.3e-08
   TIGR02169 667 elvsasekeklerlrerlee...Lereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleek...keelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelr 900
                 e  + +  e+  rl+++l++   L+++le+ +++   +e r  + +++l++ ++++ +  + + q+e++  +++++++el++++++ +e++++     + + el+ e+ +   +l + +e+l +  ++ +e+ + ++e+++e+++   +r +     +  +l++ e+  +  + + ++lq+e +e+++ +++ + ++e  k+kl+++e+ l e ++++++L+++l++  + r++ + +l 
  MMETSP1061-20121228|6667_1 114 EEAHSRSVEENLRLQNELKNlqpLKKQLEEYKARAVDAEVRFTDCQDELNKLKEETTASAEVTTQMEQYVIAQEAEIKELRRRVQQNDEAKKDSpgvGDGISELNPELMKEMLSLRNENEQLRAFAEKRQEDAVAKLEQNAEDQNMLAERYKVHFLTTKGRLESTETALAESQTSEANLQQELNETTQMREQYKSQLETTKKKLDSTETGLSESQNREANLQQKLNETTQTRDHFKTQLL 353
                 222333333444455554440114455555555555667777777777777777777777777777777777777777777777777777776422146677777777777777777777777777777777777777777777777777777777777777777766666666677777777777777777777777777777777777777777777777777777777777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       646  (0.157484); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.65u 0.17s 00:00:00.82 Elapsed: 00:00:00.72
# Mc/sec: 658.11
//
Query:       MMETSP1061-20121228|6661_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2083.54
//
Query:       MMETSP1061-20121228|6668_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.21
# Mc/sec: 2740.35
//
Query:       MMETSP1061-20121228|6671_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-22   76.1   6.8    6.3e-13   46.2   0.9    4.2  4  TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A
    3.1e-09   33.8   1.9     0.0029   14.2   0.0    3.5  4  TIGR04105 FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3


Domain annotation for each model (and alignments):
>> TIGR02512  FeFe_hydrog_A: [FeFe] hydrogenase, group A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.1   0.00098         2      35      80 ..     110     155 ..      98     184 .. 0.78
   2 ?   -2.0   0.0      0.13   2.7e+02     120     150 ..     219     249 ..     211     255 .. 0.86
   3 !   46.2   0.9   3.1e-16   6.3e-13     147     268 ..     294     439 ..     285     449 .. 0.81
   4 !   24.3   0.0   1.3e-09   2.8e-06     327     373 ..     609     665 ..     564     667 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00098
   TIGR02512  35 lktevatkleklldeseCisCGqCvlvCpvgaitekdeveevlkal 80 
                  + e +tk+++  ++++C+ C  Cv++  +  ++e+++++++ + l
  MMETSP1061-20121228|6671_1 110 VEGEKKTKKAVKASMADCLACSGCVTTAETVMMEERHSLKSLRNRL 155
                 44455666777778889*********99999999999988776655 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.13
   TIGR02512 120 rklGfdyvfDtnfaADltimeegtEllerlk 150
                 ++l +++v D n+    t ++e++E+ +  k
  MMETSP1061-20121228|6671_1 219 KMLSVKVVMDGNIPLQWTWIDEAQEFCQAYK 249
                 68999*********************99876 PP

  == domain 3    score: 46.2 bits;  conditional E-value: 3.1e-16
   TIGR02512 147 erlk.egkklPlftsCcPaWvnlvEkkyPellpnlStakSpqqmlgaviKsylakklgia......................pedvlvvsimPCtaKKdEaerpelk.kdglrdvdavlttrElakllkeekidlakledsqfDel 268
                 +  k  ++ lPl+   cPa v lvEk+   l+pnlS + Sp++++g ++ +   ++ + +                      +++  + +imPC  KK Ea+r+++  +++ + vd+v++t+E ++l++e  +  ++ + +q  + 
  MMETSP1061-20121228|6671_1 294 NNSKrPAAILPLISGSCPALVCLVEKTLTHLVPNLSQSMSPMSLAGIILNHDGDSDENDKlsshtvdtnsvlstddetsnivRNKWDHWAIMPCHDKKLEASRKDFAnESKEQAVDLVISTQECVELVEEWIQSQQHKNHDQSQAH 439
                 4444367789**************************************99988777665566889999*******998777777777899****************95556899************99876555555555555544 PP

  == domain 4    score: 24.3 bits;  conditional E-value: 1.3e-09
   TIGR02512 327 tevkvavvhglknirkllekvkkge..........aeydfiEvmaCpGGCvnGgGqp 373
                   ++ a++hg++ ++++l++v ++             ++++E maCp GCvnGgG+ 
  MMETSP1061-20121228|6671_1 609 LVLHFAIAHGMQTMQRALKQVVERPigntgnvcipRTLHYLEAMACPHGCVNGGGSV 665
                 55899***************998766667788888899*****************86 PP

>> TIGR04105  FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.23   4.6e+02     438     455 ..     120     136 ..     100     150 .. 0.55
   2 !   14.2   0.0   1.4e-06    0.0029     286     324 ..     305     343 ..     287     350 .. 0.83
   3 !    4.1   0.0    0.0016       3.2     335     382 ..     384     435 ..     361     442 .. 0.74
   4 !   12.9   0.0   3.5e-06    0.0072     397     460 ..     595     666 ..     559     668 .. 0.58

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.23
   TIGR04105 438 leenliEgmaCegGCvgG 455
                 +++++ + +aC+ GCv+ 
  MMETSP1061-20121228|6671_1 120 VKASMADCLACS-GCVTT 136
                 233333334442.34433 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.4e-06
   TIGR04105 286 lttSCCpafvklvkkkfpelaekiSetvsPmvatarlik 324
                 l +  Cpa v lv+k++++l++++S+++sPm  ++ ++ 
  MMETSP1061-20121228|6671_1 305 LISGSCPALVCLVEKTLTHLVPNLSQSMSPMSLAGIILN 343
                 56778**************************98876655 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.0016
   TIGR04105 335 iGPCiaKksEaqreev.....kdevdyvltfeElaalleakgidleeleeeel 382
                 i PC  Kk Ea+r++      +++vd v++ +E   l+e   i+ ++ +++++
  MMETSP1061-20121228|6671_1 384 IMPCHDKKLEASRKDFaneskEQAVDLVISTQECVELVEE-WIQSQQHKNHDQ 435
                 67*********9876522222568*********9988763.466666665554 PP

  == domain 4    score: 12.9 bits;  conditional E-value: 3.5e-06
   TIGR04105 397 Gvaeavkealkekeedlevkivkveglkeckkllalakagkle..........enliEgmaCegGCvgGpgtlk 460
                 G++  v+e    ++++l ++++ ++g++ ++++l+++ +  +            +++E+maC++GCv+G g+++
  MMETSP1061-20121228|6671_1 595 GITPVVSENE--ESSKLVLHFAIAHGMQTMQRALKQVVERPIGntgnvciprtLHYLEAMACPHGCVNGGGSVR 666
                 4444443332..224566677777888888877777665333222233344435789************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.40
# Mc/sec: 2484.69
//
Query:       MMETSP1061-20121228|6677_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       356  (0.0867869); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 914.82
//
Query:       MMETSP1061-20121228|6681_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 486.28
//
Query:       MMETSP1061-20121228|6678_1  [L=901]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    5.0   4.0          3    4.3   2.8    1.3  1  TIGR00939 2a57: nucleoside Transporter


Domain annotation for each model (and alignments):
>> TIGR00939  2a57: nucleoside Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   2.8   0.00073         3     202     271 ..     430     499 ..     400     506 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.00073
   TIGR00939 202 rkylekkld.keaqedetkkelrskaeendepakgdkeskteelsaekepeskeeeevelktsvftvlkkv 271
                 rk   k+++ k+++ede ++e + +++++d  ++++  ++t e ++  +++s+  e+   +++  t+++++
  MMETSP1061-20121228|6678_1 430 RKKRSKQQQpKQGEEDENEAEEQDQEDVDDVENETETVDDTAEAESLTKEDSNSLEQS-TAATTITIFERL 499
                 3334555556788888888888888888888888888888877777766665444444.444555777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (901 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.13s 00:00:00.57 Elapsed: 00:00:00.32
# Mc/sec: 3716.32
//
Query:       MMETSP1061-20121228|6682_1  [L=1302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-09   32.4   0.0      1e-08   31.8   0.0    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    7.4e-08   29.1   0.7    2.2e-07   27.6   0.0    1.9  2  TIGR00763 lon: ATP-dependent protease La
    1.6e-06   25.4   0.0    2.9e-06   24.5   0.0    1.3  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    4.8e-06   23.4   0.0     0.0001   19.0   0.0    2.1  2  TIGR03689 pup_AAA: proteasome ATPase
    2.7e-05   21.0   0.0    0.00074   16.3   0.0    2.3  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    3.3e-05   20.7   0.0    5.4e-05   19.9   0.0    1.2  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    0.00038   17.4   0.0    0.00061   16.7   0.0    1.2  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0015   14.6   0.0     0.0026   13.9   0.0    1.2  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
     0.0058   13.5   0.0      0.011   12.5   0.0    1.4  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
     0.0095   12.0   0.0      0.017   11.1   0.0    1.3  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   2.4e-11     1e-08     215     332 ..    1016    1127 ..    1007    1149 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 2.4e-11
   TIGR01243  215 vllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalr 332 
                   llygppg gktl a ava+  +  ++++     +     + e+rl ei++ + +   +ii++de d+   kr  +     + +v+ +l l++ +      i+  ++nr d+ldpa++
  MMETSP1061-20121228|6682_1 1016 FLLYGPPGVGKTLTAEAVAEVLQRPLYSLSMGT-LGTTADDLEKRLSEILRLSAK-WNAIILLDEADSFLEKRSSTSSLERNAMVCVMLQLVEYFS----GILFLTSNRMDSLDPAFQ 1127
                  599************************998665.67778999*******996543.4579*************87655444557777777776665....4888899********986 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.5       0.4   1.7e+02      34     161 ..      16     143 ..       4     166 .. 0.77
   2 !   27.6   0.0   5.4e-10   2.2e-07     348     391 ..    1008    1051 ..    1003    1081 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.4
   TIGR00763  34 kkkqkyllaflkkdkeeeedvieeeedvykvgvlaqilelvklkdekskketlkvvleglrrikik..elvekeevlvvkveelkeeelekddeevkalseeiletlkeliklsklfreqvetlkalekl 161
                 ++++  ++a +k d+++++d+ ++++d+ +    a +  + +  +   + e+++++++ +r + i   +l+++++   ++v + + e+ + ++e+  a  +++   ++  ++++ +++ +++ +k++++ 
  MMETSP1061-20121228|6682_1  16 EADEDAATALAKDDNDNDNDQDDDKKDLDRYNPYAGMDPEDPN-NTGISAEDFRAMMQKKRAVGIPplKLLQEKTKQRATVARNETEPDSIRNENADAD-ADVNPDVDADVDVNAMINAEINVVKVVNDD 143
                 5556666667777777888877888888888888888887774.4467788999999999998885227788989999999999988888888877775.578888888899999999999999998873 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 5.4e-10
   TIGR00763  348 rkklkgkilclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkD 391 
                  r+k +g ++ l+GPPGVGKt  a+++A++l+r +  ls+G l  
  MMETSP1061-20121228|6682_1 1008 RGKGEGSVFLLYGPPGVGKTLTAEAVAEVLQRPLYSLSMGTLGT 1051
                  77889***********************************8765 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0     7e-09   2.9e-06     159     278 ..    1016    1126 ..    1008    1134 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 7e-09
   TIGR01242  159 vllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdre.vqrtllqllaeldGfdprgnvkviaatnrldildpal 278 
                   llyGppG+Gktl a avae  +  +  +    l      +  + + e+++l+  k  +ii++de d+   kr  +s s +r+ +   +lql+  + G+       +  ++nr+d ldpa 
  MMETSP1061-20121228|6682_1 1016 FLLYGPPGVGKTLTAEAVAEVLQRPLYSLSMGTLGTT-ADDLEKRLSEILRLSA-KWNAIILLDEADSFLEKRSSTS-SLERNaMVCVMLQLVEYFSGI-------LFLTSNRMDSLDPAF 1126
                  59******************99999988877777655.4555566689999975.7889**************7655.556651556677887666664.......445678888888885 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.5e-07    0.0001     219     241 ..    1016    1038 ..    1001    1049 .. 0.87
   2 ?    2.0   0.0     0.036        15     291     350 ..    1072    1126 ..    1065    1132 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.5e-07
   TIGR03689  219 vllyGPPGcGktliakavansla 241 
                   llyGPPG Gktl a ava+ l 
  MMETSP1061-20121228|6682_1 1016 FLLYGPPGVGKTLTAEAVAEVLQ 1038
                  59*****************9986 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.036
   TIGR03689  291 vvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPai 350 
                   ++++de ds++  r s  s + +++ v  +l     ve  + ++ +  snr d +dPa 
  MMETSP1061-20121228|6682_1 1072 AIILLDEADSFLEKRSSTSSLERNAM-VCVML---QLVEYFSGILFL-TSNRMDSLDPAF 1126
                  699************98766665555.44554...457888876665.79********95 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.8e-06   0.00074      26      66 ..     998    1039 ..     997    1046 .. 0.87
   2 ?    2.1   0.0     0.036        15     107     147 ..    1047    1088 ..    1040    1096 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.8e-06
   TIGR02928   26 elakalkpilrgsrpsnvl.iyGktGtGKtavtkkvlkelee 66  
                  ++++++++++rg+   +v+ +yG++G+GKt+++++v + l++
  MMETSP1061-20121228|6682_1  998 KYKYNFQDLIRGKGEGSVFlLYGPPGVGKTLTAEAVAEVLQR 1039
                  689999*****9987777537****************99987 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.036
   TIGR02928  107 petGlstkevfeelvkele.eredsliivLDEiDklvkkead 147 
                   + G +++++ ++l ++l  + +  +ii LDE D++++k  +
  MMETSP1061-20121228|6682_1 1047 GTLGTTADDLEKRLSEILRlSAKWNAIILLDEADSFLEKRSS 1088
                  5779999999999999999888899***********955443 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.3e-07   5.4e-05      92     211 ..    1016    1126 ..    1000    1129 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.3e-07
   TIGR01241   92 vllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfe.qakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaL 211 
                   ll+GpPG+GktL a ava   ++p++s+s   +      +  +r+ +++   ak n  +ii++De D+  +kr+ +   +  er+  +  +L  ++ f++    i++ + nr d LD+a+
  MMETSP1061-20121228|6682_1 1016 FLLYGPPGVGKTLTAEAVAEVLQRPLYSLSMGTLGTTADDL-EKRLSEILRlSAKWN--AIILLDEADSFLEKRSST---SSLERNAMVCVMLQLVEYFSG----ILFLTSNRMDSLDPAF 1126
                  589**************************977655444443.467777766244444..599999999999999874...345777777777666666654....5666778888888885 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.5e-06   0.00061      33      78 ..    1016    1062 ..    1008    1084 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.5e-06
   TIGR00635   33 vllyGPPGlGkttlakiiakelgvklkitsgpalek.pgDlaailta 78  
                   llyGPPG+Gkt  a+ +a+ l+  l   s ++l   + Dl   l++
  MMETSP1061-20121228|6682_1 1016 FLLYGPPGVGKTLTAEAVAEVLQRPLYSLSMGTLGTtADDLEKRLSE 1062
                  69***********************9999999886514566666655 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   6.3e-06    0.0026     597     620 ..    1014    1037 ..    1002    1045 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.3e-06
   TIGR03345  597 gvFllvGpsGvGktetalalAell 620 
                  +vFll Gp GvGkt ta a+Ae l
  MMETSP1061-20121228|6682_1 1014 SVFLLYGPPGVGKTLTAEAVAEVL 1037
                  69********************87 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   2.8e-05     0.011     118     205 ..    1014    1094 ..     999    1106 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.8e-05
   TIGR00382  118 snilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidki.arksenasitr 205 
                  s  ll Gp G Gktl a+++a+ l+ p+       +   G   +d+e  l ++l+ +        + ii +de d    ++s  +s+ r
  MMETSP1061-20121228|6682_1 1014 SVFLLYGPPGVGKTLTAEAVAEVLQRPLYSLS---MGTLGTTADDLEKRLSEILRLSA-----KWNAIILLDEADSFlEKRSSTSSLER 1094
                  67899**********************96544...44457778999999999998643.....23469999999975156666667666 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   4.2e-05     0.017     182     293 ..     987    1086 ..     962    1103 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.2e-05
   TIGR02639  182 gkidPliGredelertiqvLcrrkknnP..llvGepGvGktaiveGLakriaedkvPealknakiysLdlgsllaGtkyrGdfeerlkevveeiekeedailfiDeihtivgag 293 
                   + d   G  ++ +   q L r k      ll G pGvGkt  +e +a+         +l+   +ysL++g+l  Gt    d e+rl e+++ ++++ +ai+ +De    +   
  MMETSP1061-20121228|6682_1  987 VRADGTTGTGSKYKYNFQDLIRGKGEGSvfLLYGPPGVGKTLTAEAVAE---------VLQ-RPLYSLSMGTL--GTT-ADDLEKRLSEILR-LSAKWNAIILLDEADSFLEKR 1086
                  4445666777777777777777666655114569999999987776664.........454.469*******9..554.47********995.99999*******988776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.80u 0.15s 00:00:00.95 Elapsed: 00:00:00.55
# Mc/sec: 3124.54
//
Query:       MMETSP1061-20121228|6679_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-07   28.9   0.0    4.8e-07   27.5   0.0    1.7  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.2e-10   4.8e-07       1     147 [.      31     176 ..      31     183 .. 0.73
   2 ?   -3.5   0.1      0.41   1.7e+03     136     160 ..     364     389 ..     351     396 .. 0.46

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.2e-10
   TIGR00231   1 tkeikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtk........eiiheakkkgvpiilvvnKiDlkddlktkvkslfaklnaepiiel 147
                 ++++k++++G+  +GK+++ + +  n+ + + +    t d++   ++  G    +nl+D +Gq++f   +++  r++e + + v++ i+v d+e+   +++          i++  +  ++ i l + K+Dl+   +++   +++  ++  +ie+
  MMETSP1061-20121228|6679_1  31 MAKKKVLLMGKAHSGKTSMRSIIFANYLARDTTRLSPTLDVEHHHVRFLG-GLVLNLWDCGGQDAF--YESYFERDRETIFRGVELLIYVFDIESETPEKDFdhfcgvleAIEENSP--DARIFLLIHKMDLVA--EEDREAILEDRKQ--LIEE 176
                 5789***********************99999988999999999999877.58*********9999..6666678888888888888888888876533332122221103444444..788999999999999..5555555554444..4444 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.41
   TIGR00231 136 faklnaep.iielsaetgknidklfk 160
                  + l+  p +     e+ +ni k fk
  MMETSP1061-20121228|6679_1 364 QQHLSRTPhFDAHRFEKISNIIKQFK 389
                 33333333333344444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2304.73
//
Query:       MMETSP1061-20121228|6686_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.17
# Mc/sec: 512.43
//
Query:       MMETSP1061-20121228|6685_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-26   90.5   0.0    3.5e-26   89.9   0.0    1.3  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.9   0.0   8.6e-30   3.5e-26       6     224 ..      49     282 ..      46     288 .. 0.78

  Alignments for each domain:
  == domain 1    score: 89.9 bits;  conditional E-value: 8.6e-30
   TIGR03633   6 aitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGv..........ddkearlfetdPsGalleykavaiGagr......ekvlellekeykedlsldeaielalkalakaleeelkaeevevavveveekkfrklskee 224
                 ++t f PdG+l qve a  a   gt  vG+   + ++l++ +   s+l++ +   +   +  +++   +G+ +D+rv+++ a++ a  + +tYdepi +  +  +++ l q+yt   G+rPfG +ll++ +            +++rlf+ d sG ++e  +va+ +g+      +k+l++ +k+  +d     + + + ++++++l+e+l++++++ + +++ +k+ r+ ++++
  MMETSP1061-20121228|6685_1  49 SLTTFNPDGKLGQVERALVAASLGTPIVGVVKGNNIILASPQILPSPLMNDDGTPRFSVVSPQIVLGHSGISSDGRVVMESAQRLAIEHTYTYDEPIPIGLFLEELSLLFQAYTMKPGARPFGCTLLVGYLptlcthsatnGAEKPRLFQIDCSGSVVELDTVAVINGKfngdmkTKLLDFANKNDGNDA-TGGSNNDSRESISRILHEALQNDRIDNSSATTRKKSSRNKDNNN 282
                 5799***************************************************************************************************************************9865222222221123589*****************996654211000222333333322222.22333445566666666666677776666666666666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1624.48
//
Query:       MMETSP1061-20121228|6684_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-36  123.4   0.5    3.5e-36  122.7   0.3    1.3  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.7   0.3   8.5e-40   3.5e-36       3     152 ..      49     197 ..      47     199 .. 0.90

  Alignments for each domain:
  == domain 1    score: 122.7 bits;  conditional E-value: 8.5e-40
   TIGR00401   3 itfalGCfWgveklfr.kidgvektkvGylngktenPtyeevCsgdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqe.sakyk.kkivteiekaenfyeaeeyhqqylkknPkgy 152
                  ++a+GCfW+ e++f+   +gv+++++Gy++g+ +nPty++    + gh evv +eydp + s+e L++  +++ dP ++n q+ DkG +y  +i+  ++e++  ae+   ++ e   +++ + i   i +  +f++aeeyhq+y+ knP++y
  MMETSP1061-20121228|6684_1  49 LLVAVGCFWCGEQAFEqYAPGVVEAVSGYAGGTNDNPTYKN----HPGHYEVVLIEYDPTKTSYELLVEYAYRNLDPFDGNGQFCDKGASYHPAIFFATEEEQLRAEEVLAEILElYPDWSeESIKVPILERPKFWKAEEYHQDYYIKNPSNY 197
                 6789***********94579*******************96....789************************************************99999888887777665554567751579999**********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|6688_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-06   25.5   0.1    2.5e-06   25.1   0.0    1.2  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    4.3e-05   19.4   0.1      5e-05   19.2   0.1    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00019   18.9   0.7     0.0079   13.6   0.0    2.4  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0075   14.7   0.0      0.028   12.9   0.0    1.9  1  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   2.5e-09   2.5e-06      23     111 ..      23     112 ..       5     124 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2.5e-09
   TIGR02552  23 alAYnlyqqgkyeeAeklFql.LaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLkl 111
                 +++++++ +g+ +eA   F++ L + ++ +a  w  L+ c+ + ++  eAi + ++a+  d+  p++++++++++++  + e+Al+ L +
  MMETSP1061-20121228|6688_1  23 QQGMEQFREGNIREAILSFEMeLQLRNMDNATAWRMLGKCHAENDQDPEAIRCLEAAVDKDPFCPEALLALGVSYVNELRHEKALENLGA 112
                 6899***************9879999**********************************************************999865 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   4.9e-08     5e-05     339     422 ..      28     112 ..       6     139 .. 0.60

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 4.9e-08
   TIGR02917 339 qLkegkvdeaiatls.palekdsddsallsllGeayLekgdfekAaeylakaseldPenaaaktklgiskLaqGdkseaiadLet 422
                 q +eg++ eai   + +++ ++ d++ +  +lG+ + e+ +  +A++ l+ a   dP  + a ++lg+s+  + ++++a+++L +
  MMETSP1061-20121228|6688_1  28 QFREGNIREAILSFEmELQLRNMDNATAWRMLGKCHAENDQDPEAIRCLEAAVDKDPFCPEALLALGVSYVNELRHEKALENLGA 112
                 4555555555555541233344555555555555555555555555555555555555555555555555555555555555543 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.2   0.00027      0.27      18      93 ..       5      81 ..       1      84 [. 0.76
   2 !   13.6   0.0   7.7e-06    0.0079     113     190 ..      32     108 ..      29     113 .. 0.76
   3 !    6.2   0.0    0.0014       1.5      35      66 ..      91     122 ..      87     157 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00027
   TIGR02521 18 vkesskkkdrekaakirvqLaleYleqgdlekAkenlekAlel.dpkdadanlalAlyyqqlgelekAeesfrkAlt 93
                v+++++++++  a   ++q ++e +++g++++A  + e  l+l + ++a a+ +l+    +  ++ +A +  + A+ 
  MMETSP1061-20121228|6688_1  5 VNANANANNKIDATLDYMQQGMEQFREGNIREAILSFEMELQLrNMDNATAWRMLGKCHAENDQDPEAIRCLEAAVD 81
                45566667777777778888999999999999999999999973568889999999988888888888777777765 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 7.7e-06
   TIGR02521 113 kkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAra 190
                 +++ eA+  fe  ++  + +  a ++  +g c ++  ++ +a   l+ a+++dp  pe+ll+l   ++++ +  +A +
  MMETSP1061-20121228|6688_1  32 GNIREAILSFEMELQLRNMD-NATAWRMLGKCHAENDQDPEAIRCLEAAVDKDPFCPEALLALGVSYVNELRHEKALE 108
                 56666666666666666554.577899999999999999999999999999999999999999888888877777765 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0014
   TIGR02521  35 vqLaleYleqgdlekAkenlekAleldpkdad 66 
                 + L+++Y ++   ekA enl    +++pk+a 
  MMETSP1061-20121228|6688_1  91 LALGVSYVNELRHEKALENLGAWFTHNPKYAG 122
                 78**************************9986 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.8e-05     0.028       5     100 ..      21     111 ..      17     123 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.8e-05
   TIGR02795   5 eykaallvlkegdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlq 100
                 + +++ ++++eg+ ++A+ +F+  l+   ++   + A   lG+   ++ +  +A++  +++v    k++  p+all lg+s+++  ++ekA + l 
  MMETSP1061-20121228|6688_1  21 YMQQGMEQFREGNIREAILSFEMELQL--RNMDNATAWRMLGKCHAENDQDPEAIRCLEAAVD---KDPFCPEALLALGVSYVNELRHEKALENLG 111
                 556666667777777777777665554..2333444555689999999999999999999998...7789**************999999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 850.01
//
Query:       MMETSP1061-20121228|6690_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 707.46
//
Query:       MMETSP1061-20121228|6692_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-09   35.2   0.0    0.00038   17.8   0.0    2.2  2  TIGR01499 folC: bifunctional protein FolC


Domain annotation for each model (and alignments):
>> TIGR01499  folC: bifunctional protein FolC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.7e-07    0.0015     282     306 ..       2      26 ..       1      65 [. 0.85
   2 !   17.8   0.0   9.2e-08   0.00038     343     398 ..     175     243 ..     116     245 .. 0.55

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.7e-07
   TIGR01499 282 llDgAHnpesaealvewlkkeankr 306
                 +lDgAH+p+s+ea vew++++ +++
  MMETSP1061-20121228|6692_1   2 FLDGAHTPQSLEATVEWFRSKTSTN 26 
                 79*****************544443 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 9.2e-08
   TIGR01499 343 praesaadlekaaesqge......eelvsswrealeea.................kekaeeeekvlVtGSlylvgevlk 398
                 ++a+ +a+ +++a  + e        +          +                  ++ +  ++v+VtGSlylvg +l 
  MMETSP1061-20121228|6692_1 175 ESAAESATAAASASHS-EssssnaIVCN---------RtarevlddllsatpesgGDDSSPTTQVFVTGSLYLVGSFLA 243
                 1111111111111111.11233442233.........1333334444666676553488999*************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1785.00
//
Query:       MMETSP1061-20121228|6694_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1634.15
//
Query:       MMETSP1061-20121228|6695_1  [L=943]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.32
# Mc/sec: 3889.55
//
Query:       MMETSP1061-20121228|6699_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|6698_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-17   59.8   1.0    2.1e-08   31.3   0.0    3.1  2  TIGR00261 traB: TraB family protein
  ------ inclusion threshold ------
      0.023   11.7   0.1      0.037   11.0   0.1    1.3  1  TIGR02706 P_butyryltrans: phosphate butyryltransferase


Domain annotation for each model (and alignments):
>> TIGR00261  traB: TraB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0     1e-11   2.1e-08       4      60 ..      31      87 ..      29      93 .. 0.93
   2 !   19.3   0.2   4.6e-08   9.4e-05      66     216 ..     117     306 ..     110     317 .. 0.71

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 1e-11
   TIGR00261  4 kdiyivGtahvskksveevaeviesvkPdaiavelderryhslvttkekevdvkkvl 60
                +++ ++Gtah+s ks ++v+++ie+++P+a+ +e+d+ r   l  ++  ++ v+kv 
  MMETSP1061-20121228|6698_1 31 QTVTLIGTAHLSEKSNNQVQRLIETLQPNAVMIEIDPSRLERLGFDNADDIRVDKVT 87
                5789*************************************9999999999999985 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 4.6e-08
   TIGR00261  66 lklliqlilanfqkkvgeetGikPGsemkkaiekakkagl..pvllidrdieltlkrl.............wdkltfveki.......kiifellss..teakeelevdelleedvl...........eklvkelkkisPkvkkvliderdefiakkl...leae.krknsivavvGaGhveGivralkk 216
                 + l+ +l+l+ + k + +e+  k G e ++a++ a++      ++l drd   t++r+             +++l  ++k        ++  ell+   +e +++ e+de+ +  ++            +l  +l++ +P+ ++ ++ erd  +++ +   le+   +   +v vvG  hv G+++ ++ 
  MMETSP1061-20121228|6698_1 117 FALVARLLLTRMYKSMENEMDQKAGGEFLRAVQTAENCTKcdTIILGDRDSVRTIQRVaemaiesgdfvgvLKRLQAINKEeldklepQVRKELLRQkgQEGNDDFELDEVELTTAMmetlkedkqfrTRLFSKLEQDVPEFTRAFLKERDYVMSESIrreLELRpAEVRNVVGVVGLAHVPGMEEHFRA 306
                 7789999999999999999999999999999999997643226999999999999996222222111111123444443331111111244678876224566779999987766656777887667778999999******************998843355542345789************998765 PP

>> TIGR02706  P_butyryltrans: phosphate butyryltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   1.8e-05     0.037      25      76 ..     143     194 ..     128     200 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.8e-05
   TIGR02706  25 evleavkeakekgiarailvGdkekikeiakkigmdlddveiveakdskkaa 76 
                 e l+av++a++ + ++ i++Gd++ ++ i +  +m+++  + v   +  +a 
  MMETSP1061-20121228|6698_1 143 EFLRAVQTAENCTKCDTIILGDRDSVRTIQRVAEMAIESGDFVGVLKRLQAI 194
                 789*********************************9999988877777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1225.61
//
Query:       MMETSP1061-20121228|6700_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 2128.86
//
Query:       MMETSP1061-20121228|6702_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 897.53
//
Query:       MMETSP1061-20121228|6705_1  [L=649]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.084   10.8   0.0      0.084   10.8   0.0    1.8  2  TIGR00739 yajC: preprotein translocase, YajC subunit


Domain annotation for each model (and alignments):
>> TIGR00739  yajC: preprotein translocase, YajC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.8      0.66   2.7e+03       7      20 ..      49      62 ..      46      63 .. 0.74
   2 ?   10.8   0.0   2.1e-05     0.084      13      42 ..     560     589 ..     555     593 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.66
   TIGR00739  7 lplvliiliFyFli 20
                l+l l+++ F+ l+
  MMETSP1061-20121228|6705_1 49 LLLFLFMACFMLLV 62
                67788888888775 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 2.1e-05
   TIGR00739  13 iliFyFliirpqrkrrkahkkliesLkkGd 42 
                 + ++yFl++r +  +rk+hk++ + +k G+
  MMETSP1061-20121228|6705_1 560 GNVLYFLLVREEVWQRKHHKEIYNLVKGGQ 589
                 5699*****************999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 2676.90
//
Query:       MMETSP1061-20121228|6706_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 2080.15
//
Query:       MMETSP1061-20121228|6708_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.62
# Mc/sec: 289.52
//
Query:       MMETSP1061-20121228|6707_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.37
# Mc/sec: 1765.80
//
Query:       MMETSP1061-20121228|6712_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.30
# Mc/sec: 228.78
//
Query:       MMETSP1061-20121228|6714_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   12.8   2.9     0.0094   12.7   2.0    1.0  1  TIGR00998 8a0101: efflux pump membrane protein
  ------ inclusion threshold ------
      0.018   10.6   9.3      0.019   10.5   6.4    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.019   10.5   8.3      0.019   10.4   5.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.15    8.8   6.2       0.15    8.8   4.3    1.0  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
       0.77    6.6   6.8       0.83    6.5   4.7    1.0  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
       0.85    7.8   6.2       0.85    7.8   4.3    1.1  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   2.0   1.4e-05    0.0094      84     142 ..       2      60 ..       1      72 [. 0.90

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.4e-05
   TIGR00998  84 kaeaklaalvrkvkqleikvkklqakveslkikleqareklkqaeldleRresllkkgl 142
                 ++e+k++a+  +++ l+ ++k lq++++ +  k eq+ ++lk+ ++++e+ + l  + +
  MMETSP1061-20121228|6714_1   2 ELEQKFSAAEAHIQSLTEQNKLLQTEIDDHTSKQEQLESALKEKDIEFEKLQGLCDEKI 60 
                 5899*********************************************9999887755 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   6.4   2.7e-05     0.019     300     366 ..       3      69 ..       1      73 [] 0.28

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.7e-05
   TIGR02168 300 leqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeae 366
                 leq+   +++  ++l ++++ l+++++++ sk+e+le +l+e + e+e+l+  +++  +e+++ +++
  MMETSP1061-20121228|6714_1   3 LEQKFSAAEAHIQSLTEQNKLLQTEIDDHTSKQEQLESALKEKDIEFEKLQGLCDEKINEAQNWKEQ 69 
                 2333333333333333333333333333333333333333333333333333333333333322222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   5.8   2.8e-05     0.019     867     933 ..       3      69 ..       1      73 [] 0.40

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.8e-05
   TIGR02169 867 leeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeee 933
                 le++   +ea+++ L e+ k L+ e++++ ++ ++le++ +e ++e ek +    e+  ++++ +e+
  MMETSP1061-20121228|6714_1   3 LEQKFSAAEAHIQSLTEQNKLLQTEIDDHTSKQEQLESALKEKDIEFEKLQGLCDEKINEAQNWKEQ 69 
                 3444444444444444444444444444444444444444444444444444443333333333333 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   4.3   0.00022      0.15     133     201 ..       2      70 ..       1      73 [] 0.85

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00022
   TIGR01843 133 lfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLele 201
                 ++e++ sa +a ++sl++q k l++e+++ ++++++l++ l+  + e+e l+ L ++++ + +++ e+ 
  MMETSP1061-20121228|6714_1   2 ELEQKFSAAEAHIQSLTEQNKLLQTEIDDHTSKQEQLESALKEKDIEFEKLQGLCDEKINEAQNWKEQY 70 
                 678899999999999999999999999999999999999999999999999999999988888776665 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   4.7    0.0012      0.83       3      63 ..       2      64 ..       1      72 [. 0.72

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0012
   TIGR01554  3 elreklaelakelkkltedeke..eeaeeekkekdalkaeidkleaeierleeaaaeeeakea 63
                el++k+++ ++ +++lte++k+  +e+++++++ ++l++ +++ + e+e+l+ + +e  ++++
  MMETSP1061-20121228|6714_1  2 ELEQKFSAAEAHIQSLTEQNKLlqTEIDDHTSKQEQLESALKEKDIEFEKLQGLCDEKINEAQ 64
                899***********9998888711455566666666999999999999999988444443333 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   4.3    0.0012      0.85      32      95 ..       4      67 ..       1      73 [] 0.81

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0012
   TIGR03495 32 ekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrekrierLlreneelR 95
                e++ +a++a++++ + q + l++e++ + ++q+qL+ +l++ + + ++ +    + ++e ++ +
  MMETSP1061-20121228|6714_1  4 EQKFSAAEAHIQSLTEQNKLLQTEIDDHTSKQEQLESALKEKDIEFEKLQGLCDEKINEAQNWK 67
                5678899999999999999999999999999999999999998888877777777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       333  (0.0811799); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 418.92
//
Query:       MMETSP1061-20121228|6709_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1243.74
//
Query:       MMETSP1061-20121228|6713_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 874.43
//
Query:       MMETSP1061-20121228|6715_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|6710_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-07   26.7   0.9    5.8e-07   26.7   0.6    4.2  4  TIGR01622 SF-CC1: splicing factor, CC1-like family
     0.0006   16.2   8.8     0.0013   15.2   0.0    3.0  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
     0.0057   13.7   8.9     0.0058   13.6   0.0    2.8  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
  ------ inclusion threshold ------
       0.01   12.4   0.1       0.49    6.9   0.0    2.2  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.1     0.015        16     194     239 ..      14      55 ..       3      60 .. 0.59
   2 ?    1.3   0.2     0.027        28     260     278 ..     151     169 ..     141     172 .. 0.80
   3 !    3.7   4.6    0.0052       5.4      65     147 ..     336     422 ..     324     426 .. 0.72
   4 !   26.7   0.6   5.7e-10   5.8e-07     220     300 ..     393     475 ..     379     482 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.015
   TIGR01622 194 aseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqi 239
                 +s  E+ ++++   e      +   + k+Y+G +    tE+ ++ i
  MMETSP1061-20121228|6710_1  14 QSATEQQQQQQPNPE----EDEEHEEFKIYIGRVPTKFTEDTVKRI 55 
                 222222222222222....222345789999999999999999887 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.027
   TIGR01622 260 skGyGFiqFsdaeeakeAl 278
                  +G+GF+ Fs a    +Al
  MMETSP1061-20121228|6710_1 151 HRGFGFVSFSTAAFRDAAL 169
                 49********998766666 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.0052
   TIGR01622  65 rsrkrresererereker.rredevrrkrkeredrrerrekeer.lkeelteeeRDartvfvlqlalklreRdlkEFFskvg..kvr 147
                 + rk  +  ++++ e ++   e+  ++k+++r+ + ++++ + +   ++   +e+  + v v  l+   +e+d++EF +  +  +v+
  MMETSP1061-20121228|6710_1 336 KCRKGDKCPYKHDPEVQKrALEKIAKKKKRQRDGEGDGDDANANaNDQKRRRKEKQPLSVRVFGLNYDTTEKDVREFVESLAghPVK 422
                 5556666666666665541445556667777888888888744426777788899999*******************9987645555 PP

  == domain 4    score: 26.7 bits;  conditional E-value: 5.7e-10
   TIGR01622 220 lkLYvGnlhfnitEqeLrqiFepFG..eielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvt 300
                 l + v +l ++ tE+++r+  e+    +++++ +++ +++GrskGy  + F   + ak+A  k  G el GR ++v  ++ +t
  MMETSP1061-20121228|6710_1 393 LSVRVFGLNYDTTEKDVREFVESLAghPVKTIVFPRFEDSGRSKGYCGVYFASPKAAKDAVAKCDGAELQGRWLRVQTGKSMT 475
                 5556778999************984347************************************************9987765 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0     0.001       1.1     294     317 ..      33      56 ..       5      81 .. 0.76
   2 ?   -3.4   0.5      0.52   5.3e+02      93     105 ..     128     140 ..      94     170 .. 0.43
   3 !   15.2   0.0   1.2e-06    0.0013     301     372 ..     397     470 ..     389     478 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.001
   TIGR01642 294 dsedklyignLPldlkddqvkeLL 317
                  +e k+yig +P ++++d vk +L
  MMETSP1061-20121228|6710_1  33 HEEFKIYIGRVPTKFTEDTVKRIL 56 
                 345588888888888888888766 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.52
   TIGR01642  93 rrsrkrsssnekk 105
                 + +r+++ + +  
  MMETSP1061-20121228|6710_1 128 HDKRETTTKDDAN 140
                 2222222222222 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 1.2e-06
   TIGR01642 301 ignLPldlkddqvkeLLesFG..dLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkr 372
                 + +L +d +++ v+e +es    ++k+    +  + G sKGy+ + +  +  ++ A+a  +G +l ++ L v+ 
  MMETSP1061-20121228|6710_1 397 VFGLNYDTTEKDVREFVESLAghPVKTIVFPRFEDSGRSKGYCGVYFASPKAAKDAVAKCDGAELQGRWLRVQT 470
                 558999999*********985357888888888999************************************96 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.9      0.23   2.4e+02     445     445 ..      46      46 ..       2     151 .. 0.42
   2 !    5.0   0.3    0.0023       2.3     322     342 ..     148     168 ..     139     188 .. 0.76
   3 !   13.6   0.0   5.6e-06    0.0058     293     358 ..     400     468 ..     333     474 .. 0.63

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.23
   TIGR01628 445 a 445
                  
  MMETSP1061-20121228|6710_1  46 K 46 
                 1 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0023
   TIGR01628 322 kekSkgFGFVcfssqeeAnkA 342
                  ++ +gFGFV+fs++    +A
  MMETSP1061-20121228|6710_1 148 DKEHRGFGFVSFSTAAFRDAA 168
                 5678*********98654444 PP

  == domain 3    score: 13.6 bits;  conditional E-value: 5.6e-06
   TIGR01628 293 lddtvddekLrelFeef.GeitSakvm..ldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyv 358
                 l+   +++++re  e   G+ + + v    +++++Skg+  V f+s+++A++Av + +g  l+g+ L v
  MMETSP1061-20121228|6710_1 400 LNYDTTEKDVREFVESLaGHPVKTIVFprFEDSGRSKGYCGVYFASPKAAKDAVAKCDGAELQGRWLRV 468
                 455555556666555432444444443223466666666666666666666666666666666665554 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0    0.0066       6.8     233     258 ..     143     168 ..     139     174 .. 0.83
   2 ?    6.9   0.0   0.00048      0.49     208     279 ..     400     475 ..     381     478 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0066
   TIGR01645 233 araptlrkhkGfGflefenlqsqsea 258
                 a+a++ ++h+GfGf+ f  +  ++ a
  MMETSP1061-20121228|6710_1 143 ANASADKEHRGFGFVSFSTAAFRDAA 168
                 6788899*********9988766665 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00048
   TIGR01645 208 vhpdlseedlksvfeaf.G.eivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrv..Gkavt 279
                 +  d +e+d++   e++ G +++   + r   +++ kG+  + f+  ++ ++a+a  +  +l G++lrv  Gk++t
  MMETSP1061-20121228|6710_1 400 LNYDTTEKDVREFVESLaGhPVKTIVFPRFEDSGRSKGYCGVYFASPKAAKDAVAKCDGAELQGRWLRVqtGKSMT 475
                 566888888888888763325777778888899999***99***************************97778877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 2286.24
//
Query:       MMETSP1061-20121228|6717_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 477.19
//
Query:       MMETSP1061-20121228|6719_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   14.2   0.3     0.0049   13.6   0.2    1.3  1  TIGR03494 salicyl_syn: salicylate synthase


Domain annotation for each model (and alignments):
>> TIGR03494  salicyl_syn: salicylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   1.2e-06    0.0049     258     331 ..     163     236 ..     149     265 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.2e-06
   TIGR03494 258 akklkeeLlsdskeivehvisvkeaieeleevcepgtvvvedlmtvreR..GsvqhLgstvsgqLaedkdawdafe 331
                  +  +++  +  +eiv hv+    a +e+  +++++t + ed m v++R         s++  qLae kd ++a+ 
  MMETSP1061-20121228|6719_1 163 GRDTRKDFNESVQEIVKHVTKSVMASQEM--LSKEKTDTLEDSMGVQDRlvKTLERNNSKLENQLAEAKDDFQALR 236
                 577899*************9666666666..88999999**********333566778****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       345  (0.0841053); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 2122.82
//
Query:       MMETSP1061-20121228|6722_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 257.98
//
Query:       MMETSP1061-20121228|6720_1  [L=985]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (985 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 3939.67
//
Query:       MMETSP1061-20121228|6723_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|6724_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 281.01
//
Query:       MMETSP1061-20121228|6725_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 501.56
//
Query:       MMETSP1061-20121228|6726_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   10.5  24.6       0.05    9.9  16.7    1.4  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      0.072    9.9  24.5       0.11    9.2  17.0    1.2  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
       0.11    8.6   8.5       0.15    8.2   5.9    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
       0.31    7.1   3.3       0.36    6.9   2.3    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9  16.7   4.8e-05      0.05       9      98 ..     115     199 ..     107     267 .. 0.56

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 4.8e-05
   TIGR01642   9 rEksrerdrdkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkr 98 
                  E++ + +  + +eR+R+R+rd++++Rd  ++   rs  +d+ +  r r+  r + + + +s+ +S+ + + +s+s+  +++  +++ + 
  MMETSP1061-20121228|6726_1 115 EEEEEQNE--RERERERERERDQEEERDEGHH---RSSSEDETNTGRGRRFRRTKAKSKAKSKAKSKTKSKAKSKSKATNNNTIHNNTIP 199
                 44444444..4678888888888888887777...6667776665555555555555566666666666666666666666655555443 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2  17.0   0.00011      0.11      22      96 ..     116     189 ..     105     199 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00011
   TIGR01622  22 erdksrersRdrsrdRersrskerdrdfdrrdrdrdky..rdrerrsrkrreserererekerrredevrrkrkere 96 
                 e++++ er+R+r+r+Rer+++ erd  ++r  ++ +    r+r++r+ k +++ +++ + k   +  + ++k+k  +
  MMETSP1061-20121228|6726_1 116 EEEEQNERERERERERERDQEEERDEGHHRSSSEDETNtgRGRRFRRTKAKSKAKSKAKSKT--K-SKAKSKSKATN 189
                 45667788888888888888889999999866655555015555555555554444444443..3.33344444433 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.9   0.00015      0.15     316     413 ..     115     216 ..      98     280 .. 0.52

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00015
   TIGR02442 316 eeeqekeekkleekkeeakpdeekedeseekekeeskkqe..eeepgk....ddekeedekeeaeeeaesaeevalepagkifrvkllavska.r.argasGrrsk 413
                 eee+e++e+++e++ e+++++ee+ de+++++++e+++++       +      +k++ +++++++ +++a++++ ++++++++ +++ ++   r  +g++G r +
  MMETSP1061-20121228|6726_1 115 EEEEEQNERERERERERERDQEEERDEGHHRSSSEDETNTgrG----RrfrrTKAKSKAKSKAKSKTKSKAKSKSKATNNNTIHNNTIPFPILhRsVKGNAGSRVH 216
                 2222333333333333333333333333222222211111221....12221222222222222222222333333333444444444443333336666666655 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   2.3   0.00035      0.36     323     419 ..     112     190 ..       3     240 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00035
   TIGR00934 323 rlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksnesee 419
                  + +++ +++++  + er++ +d+ e++d+ +  ++       e+            +++  + + f+++++++k++ + ++++++k +sks+  ++
  MMETSP1061-20121228|6726_1 112 AQLEEEEEQNERERERERERERDQEEERDEGHHRSSS------ED------------ETNTGRGRRFRRTKAKSKAKSKAKSKTKSKAKSKSKATNN 190
                 2222222222222222222222222222222222222......22............1111112222222222111111111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.43
# Mc/sec: 1565.45
//
Query:       MMETSP1061-20121228|6731_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 2123.30
//
Query:       MMETSP1061-20121228|6729_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.51
# Mc/sec: 2295.58
//
Query:       MMETSP1061-20121228|6734_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|6735_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   18.6   0.0    0.00017   18.4   0.0    1.0  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit


Domain annotation for each model (and alignments):
>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     4e-08   0.00017     201     247 ..      22      76 ..      11      86 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4e-08
   TIGR01317 201 dlleaeGvdfvtnveiG........kdisaeelkedfdavvlatGatkprdlpie 247
                   ++  G df +n++           d++ +el+  +davvla G++  r+l ++
  MMETSP1061-20121228|6735_1  22 ANVTVGGSDFDSNINSNinsksnahPDVTLDELRGLYDAVVLAYGCESDRELNLP 76 
                 455556666666555446677777789***********************98653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 622.23
//
Query:       MMETSP1061-20121228|6738_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 314.26
//
Query:       MMETSP1061-20121228|6736_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 2864.16
//
Query:       MMETSP1061-20121228|6739_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 623.28
//
Query:       MMETSP1061-20121228|6742_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 1022.92
//
Query:       MMETSP1061-20121228|6743_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1121.91
//
Query:       MMETSP1061-20121228|6732_1  [L=1959]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1959 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.13s 00:00:00.96 Elapsed: 00:00:00.75
# Mc/sec: 3447.56
//
Query:       MMETSP1061-20121228|6740_1  [L=827]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.3e-166  551.4   0.0   3.5e-140  466.3   0.0    2.9  3  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
      3e-14   50.7   0.0      2e-13   48.0   0.0    2.0  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
      1e-10   39.3   0.0    2.3e-10   38.1   0.0    1.6  1  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    2.7e-05   22.0   0.0    0.00016   19.4   0.0    2.0  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
  ------ inclusion threshold ------
      0.022   10.2   0.0      0.034    9.6   0.0    1.1  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1


Domain annotation for each model (and alignments):
>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.2   0.0   1.5e-26   1.2e-23       1     164 [.       9     176 ..       9     190 .. 0.78
   2 ?   -1.3   0.0      0.14   1.2e+02     210     251 ..     250     302 ..     239     308 .. 0.58
   3 !  466.3   0.0  4.3e-143  3.5e-140     262     662 ..     356     790 ..     346     798 .. 0.87

  Alignments for each domain:
  == domain 1    score: 81.2 bits;  conditional E-value: 1.5e-26
   TIGR01381   1 faplsssvdegffqevsklklnkyklddtpkaisgsldlk..qiekvkqhls......l.svdslsldesstiasaslsvkGilknlntvesfkkvdksellkseaekiwesiqsrkalkdpsvl..sqfliisfadlkkfkfiyWfafPalvldskvsklelktesekeeieel 164
                 f p+ss+vd  f+ ++ ++kl+  +ld++p+ i +s++++  +++k +  +s      l  v+s+ + e+s++++ + + +Gil+ +nt esf+ ++k+ +lk         + +r   +d s l  +qf++i+fadlk++k  yWf+fP+++ +++++   + t++e  + +e 
  MMETSP1061-20121228|6740_1   9 FIPFSSTVDAPFWVQYCHQKLETIRLDESPRPIQASYGVHlgTTPKASDTVSktvanrLqCVESSLFPEESLVSNDRVACPGILYGYNTKESFQTLNKNGFLKDF-------LIERFLTEDHSSLeaPQFVVITFADLKQHKVLYWFGFPTFMANTPITASIVPTKEEPVSLTET 176
                 789*********************************9987334555555554111122223677788899999999999***********************953.......33344445555443379**************************99987666666665555554 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.14
   TIGR01381 210 kllvgfidpssvask.........agwqlrnvlalvasl.gn.lkkvyifslr 251
                 +++vgf+dp+ ++ +          gw++rn++a +  + g   k+v i+slr
  MMETSP1061-20121228|6740_1 250 DIVVGFVDPTAIVGSsnssskvltMGWPMRNLVAYLVLRlGLgGKRVRILSLR 302
                 56677777766643211111122268999998876544304456666666665 PP

  == domain 3    score: 466.3 bits;  conditional E-value: 4.3e-143
   TIGR01381 262 slvlaasaelsseeaaeavpkavGWernaqgklvPksvdlakeldPkrlaersvdlnlkllkWrvlPeldlevls.svkvlllGaGtlGcqvarvllGyGvrhitfvdngkvsfsnPvrqslynfedcl...eggegkaetaakalkrifPaieasgvrlevPmpGhpisekeekelledikrleelikehdvvfllldsrearWlPtvlcaradkiaisaalGfdsylvlrhGagrseessdvee.....sds...v.........ntsrlgCyfCndvvaPkdsttdrtldqqCtvtrPGvaliasalavellvsvlqhPlk..............sklpasl.ddnatvlGilPhqirGflsrfeqikleakafesCsaCseavlaeykergwkfvkdalne..ptyledltGltelkkea..evaeldfedfesddd 662
                 s+   +s++ sse+++e   k vGWe+na++k +P+ v+l  +ld + +a ++ dlnlkl+kWr++P+ld+++l+ + +vlllGaGtlGc var+llG+G+rh tfvd+g+vs+snPvrq l++++dc    ++g++kae+aa al++i   + ++gvrl++PmpGhp +++   +l e +++l eli++ d+vfll+d+re+rWlPtv++a++dki i+aalG+ds+lv+rhG  ++ ++++ ++     s s   v         + srlgCyfCndvvaP++st +rtldqqCtvtrPG+a+ias++avell+s+l hPlk              s  + s+    +++lG +PhqirG++  +  +++++ af  C+aCs  vl+ yk+  + +v  a  +   ++l+ l Gl+e +  a     +ldf d++   d
  MMETSP1061-20121228|6740_1 356 STSNSTSTSNSSEKSQEPCYKVVGWELNARQKPGPRWVNLKPLLDQSHIAIQAADLNLKLMKWRMIPDLDVDLLQnNCRVLLLGAGTLGCSVARTLLGWGIRHFTFVDYGNVSYSNPVRQILFDLDDCHfdhGQGKPKAEAAATALRKIAADVVSEGVRLSIPMPGHPSEND--ASLRETTEKLDELIRNADAVFLLTDTRESRWLPTVMAAHHDKILINAALGLDSWLVMRHGHHNNINNNNNNNgggdgS-SgagVgvgvgvadeSKSRLGCYFCNDVVAPENSTRNRTLDQQCTVTRPGLAPIASSMAVELLISLLHHPLKqrapaptsgpgfslSVESGSGsGSSSSPLGLVPHQIRGSIVTYTMMNPSVPAFPCCTACSLPVLEAYKDDPFALVSAACASvkGEFLDRLSGLDEFRARAldTLDDLDFPDDD---D 790
                 5666789999**************************************************************9972589*************************************************6443689*********************************7766..99**********************************************************986655544443221111.11112222333332579*****************************************************************9984444444156789*************************************************9987622679**********99762233445554443...2 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   2.5e-16     2e-13      21     143 ..     432     575 ..     427     591 .. 0.83

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 2.5e-16
   TIGR02356  21 eskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvk......rpKveaaaerlkelnseirvealkeev...............taenleelieqvdlvlDctDnfktrylindaceaagkPlisaa 143
                 + +vl++GaG+Lg++va++l + G+ + + vD  +v+ sN  rqilf+ +d +      +pK+eaaa++l+++  +++ e+++ ++               t+e+l eli+++d v   tD  + r+l   ++++++k li aa
  MMETSP1061-20121228|6740_1 432 NCRVLLLGAGTLGCSVARTLLGWGIRHFTFVDYGNVSYSNPVRQILFDLDDCHfdhgqgKPKAEAAATALRKIAADVVSEGVRLSIpmpghpsendaslreTTEKLDELIRNADAVFLLTDTRESRWLPTVMAAHHDKILINAA 575
                 679************************************************998888889*****************9999877664444444433333445677788888888888888888888887777777777777766 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   2.8e-13   2.3e-10      23      98 ..     431     512 ..     419     576 .. 0.87

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 2.8e-13
   TIGR02355  23 kaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvl......hsdanigqpkvesakdaleelnphieiet 98 
                  +++vl++G+G lGc+ ++ l   G+ ++t+vd+ +v+ sn  rq+l      h d   g+pk e+a++al+++   +  e 
  MMETSP1061-20121228|6740_1 431 NNCRVLLLGAGTLGCSVARTLLGWGIRHFTFVDYGNVSYSNPVRQILfdlddcHFDHGQGKPKAEAAATALRKIAADVVSEG 512
                 5789******************************************96666667888999**************98876555 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0     2e-07   0.00016      20     143 ..     431     574 ..     412     615 .. 0.66

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2e-07
   TIGR02354  20 kkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqqyk.vsdv......GkkktealkeqiseinPyveieiideki.............de..enleklfkdadivieafdnaeakallvnavlekykdkkliaa 143
                 ++++v + G G lG +va +l   Gi+++ +vd+  v  sn  rq  + ++d       Gk+k+ea    +++i+  v  e + + i              e  e l++l+++ad v    d+ e++ l   +v+   +dk+li a
  MMETSP1061-20121228|6740_1 431 NNCRVLLLGAGTLGCSVARTLLGWGIRHFTFVDYGNVSYSNPVRQILFdLDDChfdhgqGKPKAEAAATALRKIAADVVSEGVRLSIpmpghpsendaslREttEKLDELIRNADAVFLLTDTRESRWL--PTVMAAHHDKILINA 574
                 467999**************************************9754133322233339999999999999998765544433332111111111111122225667777777777777776666654..456666677777654 PP

>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   4.2e-05     0.034     419     493 ..     432     507 ..     426     516 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 4.2e-05
   TIGR01408 419 dlkvflvGaGaiGcellknlallGvatgkkGkitvtdddlieksnlnrqflfr......prdigkaksevaasavavinpr 493
                 + +v+l+GaG++Gc + +   llG +     + t  d   +  sn  rq lf       ++  gk+k+e+aa+a  +i + 
  MMETSP1061-20121228|6740_1 432 NCRVLLLGAGTLGCSVART--LLGWGIR---HFTFVDYGNVSYSNPVRQILFDlddchfDHGQGKPKAEAAATALRKIAAD 507
                 67899**********9885..6777764...8999****************964433336667999*******99998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 2598.93
//
Query:       MMETSP1061-20121228|6746_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.30
# Mc/sec: 211.18
//
Query:       MMETSP1061-20121228|6747_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 1373.66
//
Query:       MMETSP1061-20121228|6748_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 826.00
//
Query:       MMETSP1061-20121228|6749_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 2644.67
//
Query:       MMETSP1061-20121228|6751_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1742.26
//
Query:       MMETSP1061-20121228|6752_1  [L=1119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.44
# Mc/sec: 3356.72
//
Query:       MMETSP1061-20121228|6744_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2210.82
//
Query:       MMETSP1061-20121228|6753_1  [L=1559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-14   49.4   0.0    1.6e-13   48.4   0.0    1.5  1  TIGR00417 speE: spermidine synthase
    0.00051   18.2   0.1     0.0016   16.6   0.0    1.8  2  TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   7.8e-17   1.6e-13      24     183 ..     568     732 ..     554     774 .. 0.79

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 7.8e-17
   TIGR00417  24 ksefqdvlifeteefG.kvlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpklsgalddervdlkidDGvkflrdt....ekkfDviivDstdPvGpa.etlfekefyelvkkalnedGviv 183
                 k+ +q+++ f ++e+  + + + g +  + +    yhe   hvpl   ++ ++v+ iGGGD  vl ev+k+ + e ++ +e+D++  + s ky+ ++  a+dd+rv+    +  k ++ +       fD ++vD  + v  + + + + +  e +   +++dG ++
  MMETSP1061-20121228|6753_1 568 KGFYQELEYFYESEIDnTYMKMGGWLHSASNFRAHYHESAIHVPLQYVKDVRRVAYIGGGDNMVLEEVLKYPNLELVVGMELDQQACRSSLKYFGTT-PAFDDPRVEWWFGNAAKTVQIIpddyFGSFDLVLVDLLNDVSEGiKVVVDLNLLEVAPLLMKQDGGVI 732
                 5668999887666665156889999999999999***********************************************************9876.68**********99999998553323678999999987666554133445555555555555555555 PP

>> TIGR03330  SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   7.8e-07    0.0016       4      99 ..     850     944 ..     848     950 .. 0.79
   2 ?   -3.4   0.0       1.3   2.7e+03      22      56 ..    1419    1454 ..    1414    1457 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.8e-07
   TIGR03330   4 Gkhllvdlygvdeekled..eelieevlleaakaagatlvevafhkfspqGvsgvvvlaESHisiHTwpEkgyaavDvftCgdtvdpekavellkeal 99 
                 G  l++++ +v+ +  +d  +++i++ + e+aka g+ l++ +fh  s+ G s + v +E  i    +p+ +y+a+D+ + g+  d+ k  + ++++l
  MMETSP1061-20121228|6753_1 850 GALLVIEAENVTMDLNNDdsMHVIRNKIAEVAKANGMSLID-HFHASSNAGAS-FSVFNEGYIKAQVYPDVQYIAFDLMLWGT-GDTMKKSKTIEQEL 944
                 66677777777665554422678999999999999999886.79999999987.5679*******************999887.77777777777776 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.3
   TIGR03330   22 eelieevlleaakaagatlvevafhkfs.pqGvsgv 56  
                  e+ ++e++ +aa a g    ++++++f+  qG+ ++
  MMETSP1061-20121228|6753_1 1419 EDKLKEAFSNAAAAIGYYGNDSSVKTFKtGQGIVVT 1454
                  567899999999999999999999999855665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1559 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.64u 0.14s 00:00:00.78 Elapsed: 00:00:00.50
# Mc/sec: 4115.42
//
Query:       MMETSP1061-20121228|6758_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|6761_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 1392.49
//
Query:       MMETSP1061-20121228|6759_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.23
# Mc/sec: 2995.58
//
Query:       MMETSP1061-20121228|6763_1  [L=1667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.72u 0.13s 00:00:00.85 Elapsed: 00:00:00.60
# Mc/sec: 3667.10
//
Query:       MMETSP1061-20121228|6769_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|6770_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1275.89
//
Query:       MMETSP1061-20121228|6773_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 442.16
//
Query:       MMETSP1061-20121228|6774_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   10.6   6.1      0.038   10.2   4.2    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   4.2   9.3e-06     0.038     309     417 ..      47     151 ..      34     200 .. 0.56

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.3e-06
   TIGR02442 309 Rrrrkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskar.argasGrrsktrsd 417
                 R  +++ e + + +e ++e  +++++  +++e++++++++++  ++  ++ +++de +++ ++   +++   + + +++ + +++v++ a+s +r  r+a G+ s+++ +
  MMETSP1061-20121228|6774_1  47 RCLSSSREPPSTGHEAQKE--SRRHNRYSHQEQKGKQSQASQ--QRWPKQRNQRDEGRPQRNQYRRKKQD-RSPSLVQSSQYAYAVRSAASSLDRnSRSAQGKSSAVAVA 151
                 3333333333222222222..222222233333332333322..22233444555555555554444443.356677888888888888888886599999*99988763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2071.66
//
Query:       MMETSP1061-20121228|6777_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-12   45.4   2.8    3.5e-12   44.2   2.0    1.6  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.8e-06   24.4   0.1    2.5e-06   24.0   0.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
      0.019   12.9   0.0      0.031   12.2   0.0    1.3  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   2.0   2.5e-15   3.5e-12      27     105 ..       2     115 ..       1     129 [. 0.63

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 2.5e-15
   TIGR02349  27 kyHPDrnkg..ekeaeekfkeineAyevLsdeekraqYDqfghagleggagg.........ggagfegfea...............................sefgdigdifeeffggggg 105
                 kyHPDr +   ++e+  kf+e++eAyevLs+e+ ra+YD   + g  gg+ g         +        a                               ++f+d++d+f++ f ++ +
  MMETSP1061-20121228|6777_1   2 KYHPDRVPPeqKEESTIKFREVSEAYEVLSEEKSRAEYDYSLKYGGGGGGSGggggggnsgS------G-AnmhrhrhrpknhyrdpfsqfndrfrndpffsESFKDMDDLFGKTFRNQEA 115
                 8*****98633556667**********************76666655544433444444331......1.134555666666666666555556666666655566666777766665554 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.8e-09   2.5e-06      29      68 ..       2      47 ..       1      52 [. 0.79

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.8e-09
   TIGR03835 29 kyhPDrnka...adaakifaeineandvLsnPkkraryD...kyGh 68
                kyhPDr       ++   f+e+ ea++vLs  k ra+yD   kyG 
  MMETSP1061-20121228|6777_1  2 KYHPDRVPPeqkEESTIKFREVSEAYEVLSEEKSRAEYDyslKYGG 47
                9*****644221455556*********************7777875 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.3e-05     0.031      18      61 ..       2      44 ..       1      47 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.3e-05
   TIGR00714 18 qyHPD.vsksaqeqaaalqqStelNqAykTLkdplkRaeyllkLq 61
                +yHPD v  +++e   + ++  e+ +Ay+ L +   Raey  +L+
  MMETSP1061-20121228|6777_1  2 KYHPDrVPPEQKE--ESTIKFREVSEAYEVLSEEKSRAEYDYSLK 44
                8****55555544..8999*********************77776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1445.28
//
Query:       MMETSP1061-20121228|6771_1  [L=703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     3e-164  545.3   5.3   3.6e-130  433.0   1.4    3.3  2  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
   5.9e-115  382.2   6.0      1e-91  305.6   2.1    3.6  2  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    1.8e-95  318.4   0.0    5.9e-65  217.8   0.1    2.3  2  TIGR01438 TGR: thioredoxin and glutathione reductase
    3.3e-76  254.6   1.2    1.9e-67  225.8   0.1    2.6  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    3.4e-76  254.5   3.1      9e-64  213.6   1.5    3.2  2  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    9.6e-69  230.4   5.0    1.8e-57  193.2   0.9    3.6  3  TIGR02053 MerA: mercuric reductase
    1.5e-60  203.2   1.9    3.1e-58  195.6   0.4    2.2  2  TIGR03452 mycothione_red: mycothione reductase
    4.8e-18   63.0   0.7    4.8e-18   63.0   0.5    1.9  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    6.2e-17   59.1   0.9    9.4e-17   58.5   0.6    1.2  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    4.7e-16   56.3   1.8    2.9e-14   50.4   0.1    2.3  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    2.5e-12   44.1   1.2    4.5e-11   40.0   0.3    2.2  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    3.7e-12   43.5   0.1    1.1e-11   41.9   0.0    1.7  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    3.7e-09   34.1   2.1    4.5e-08   30.5   0.0    2.7  3  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    1.1e-08   31.9   0.1    5.6e-07   26.3   0.0    2.3  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    1.9e-06   24.6   4.7     0.0003   17.3   0.3    2.9  3  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    3.3e-06   24.0   0.2     0.0011   15.7   0.0    2.4  3  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    3.1e-05   19.4   1.1    5.1e-05   18.7   0.2    1.6  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00043   17.3   0.0    0.00071   16.6   0.0    1.3  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    0.00044   17.0   5.1     0.0049   13.5   3.5    2.3  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00046   16.7   1.4    0.00054   16.5   0.0    1.8  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0011   15.8   0.1     0.0022   14.8   0.0    1.4  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
     0.0079   13.7   1.0      0.018   12.6   0.2    2.0  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
  ------ inclusion threshold ------
      0.017   11.6   2.6        0.2    8.0   0.0    2.8  3  TIGR01176 fum_red_Fp: fumarate reductase, flavoprotein subunit
      0.058   10.2   0.2       0.13    9.0   0.0    1.6  2  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
       0.19    8.2   7.0        1.3    5.5   0.1    4.1  5  TIGR01813 flavo_cyto_c: flavocytochrome c
       0.71    6.3   7.5       0.44    7.0   0.6    2.3  2  TIGR02734 crtI_fam: phytoene desaturase
        6.8    3.6  10.1         11    2.9   7.0    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.0   1.4  2.4e-132  3.6e-130       2     384 ..     154     587 ..     153     601 .. 0.91
   2 !  109.3   0.0   3.7e-34   5.6e-32     382     449 ..     623     690 ..     615     691 .. 0.96

  Alignments for each domain:
  == domain 1    score: 433.0 bits;  conditional E-value: 2.4e-132
   TIGR01421   2 eydylviGGGsGGiasarraaeyGaka.llveekklGGtcvnvGcvPkkvmwyaaslaelledaadyGfkseken..kfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkde.tvevngke.....................ytakhiliatGgkpsipeniPGaelgldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveelekaglevhkls.kvvkvektveg....klvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegk.....................edakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltk 384
                 +yd++viG GsGGiasarraa+   k+ ++ e+k+lGGtcvnvGcvPkkv+w+aas+ae++++ + yGf+ ++e+  +f+++ lke+rd y+ rln+iy++nl+++ ve+++G a+++kd+ tv+v+  e                     +takhiliatGg p  pe+    e  ++sdgff+lee+P++ v+vGaGyiavelaGvl++lG++t+lv+r+++++rs+d li +++ +el+k+g+e+++++  ++kve  v++       ++l+dg+ i+dvd +i a Gr p ++ l+l + gv +   g+i  de  +t+ +g+ya+Gdv G +eltPvaiaaGr+l++rlf+++                     +++++ yenvPtv+fshP+igt+Glte +aiekyG + +kvy+s+f+ m+y + +
  MMETSP1061-20121228|6771_1 154 DYDLFVIGAGSGGIASARRAASTWNKTvAVAEAKRLGGTCVNVGCVPKKVLWNAASIAETVHEMHRYGFHYADEDaiTFDWSFLKEQRDLYIRRLNSIYERNLKNSGVERMRGTARLSKDPnTVHVEVVEevknwtkekalnittrivtktVTAKHILIATGGYPVLPEGEGIGEHCITSDGFFELEEQPRNAVVVGAGYIAVELAGVLQALGTDTKLVLRKDQAMRSLDPLIRNTLDDELVKQGIEIYRNTgGLAKVEEVVNDaqdlVKRVHLHDGSVIDDVDLVIVAPGRAPLVEPLQLSNRGVVTSASGHIVTDENSETSADGVYAVGDVSGPIELTPVAIAAGRRLADRLFGTDsdrsggnsnsnsnsnsnklrpTQKRVSYENVPTVIFSHPPIGTIGLTEPQAIEKYGADAIKVYQSKFSNMFYGIWN 587
                 6*******************99877752788***************************************99887789*****************************************9877777655556889999************99****************88877899************************************************************************9975245666665544221356799**********************************************************************************865455555555555555555555567899********************************************98865 PP

  == domain 2    score: 109.3 bits;  conditional E-value: 3.7e-34
   TIGR01421 382 ltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseelvtl 449
                 ++ ek k+ +klvcag++e+vvGlh+iG+g+dellqGf+vaikmGatkadfd+++aihPt++eelvtl
  MMETSP1061-20121228|6771_1 623 IMDEKPKTAMKLVCAGPDERVVGLHVIGMGADELLQGFGVAIKMGATKADFDDCMAIHPTAAEELVTL 690
                 567899*************************************************************8 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  305.6   2.1   6.6e-94     1e-91       1     379 [.     153     586 ..     153     592 .. 0.85
   2 !   71.2   0.0     9e-23   1.4e-20     378     445 ..     623     690 ..     612     691 .. 0.94

  Alignments for each domain:
  == domain 1    score: 305.6 bits;  conditional E-value: 6.6e-94
   TIGR01424   1 ydydlfviGaGsGGvraarlaaalGak.vaiaeedlvGGtcvirGcvPkkllvyasefaeeledakgyGwe...vekaefdwkkllakkdkeiarlsglykkllakagvellegraelv.dantvevle...................dgktytaekiliavGgrpvkpelPGa.elaitsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeeleerGirillkt....vlksiekvddG.lkvtlskdeeivadv..vllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtdrinltPvaikeaaafaetefk..........n...n.......p..tkadhdlvatavfsqPevatvGlseeearekft.ddievyraefrPmkatls 379
                 +dydlfviGaGsGG+++ar+aa++ +k va+ae +++GGtcv  GcvPkk+l  a+++ae++++ + yG++    +   fdw  l +++d  i+rl+ +y ++l+++gve + g a+l  d+ntv+v                      +kt+ta++ilia+Gg pv pe  G  e +itsd  f+le++P++++vvG+Gyiave+ag+++ lG+ ++l+ r+++ +r +d  +r++l++el ++Gi+i  +t     ++++ ++++  +k +  +d++++ dv  v++a Gr P v+ l+l + Gv ++ +g i+ de s+ts +++yavGdv+  i+ltPvai  ++ +a+  f+          n   n       p  +++++++v t +fs+P+++t+Gl+e +a ek++ d i+vy+++f  m   + 
  MMETSP1061-20121228|6771_1 153 FDYDLFVIGAGSGGIASARRAASTWNKtVAVAEAKRLGGTCVNVGCVPKKVLWNAASIAETVHEMHRYGFHyadEDAITFDWSFLKEQRDLYIRRLNSIYERNLKNSGVERMRGTARLSkDPNTVHVEVveevknwtkekalnittriVTKTVTAKHILIATGGYPVLPEGEGIgEHCITSDGFFELEEQPRNAVVVGAGYIAVELAGVLQALGTDTKLVLRKDQAMRSLDPLIRNTLDDELVKQGIEIYRNTgglaKVEEVVNDAQDlVKRVHLHDGSVIDDVdlVIVAPGRAPLVEPLQLSNRGVVTSASGHIVTDENSETSADGVYAVGDVSGPIELTPVAIAAGRRLADRLFGtdsdrsggnsNsnsNsnsnklrPtqKRVSYENVPTVIFSHPPIGTIGLTEPQAIEKYGaDAIKVYQSKFSNMFYGIW 586
                 9********************98765549****************************************9853233458***************************************7589998776555888999999998876666679******************999669*************************************************************************9876322234455555555377777799999976533999************************************************************9998777522222222220211122222222113578***************************9725689*******9987665 PP

  == domain 2    score: 71.2 bits;  conditional E-value: 9e-23
   TIGR01424 378 lsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeelvtm 445
                 ++ ++ k+ +klv    d++v+G hv+G  a e++q+ ++a+k+Gatk+dfd  +a+hP++aeelvt+
  MMETSP1061-20121228|6771_1 623 IMDEKPKTAMKLVCAGPDERVVGLHVIGMGADELLQGFGVAIKMGATKADFDDCMAIHPTAAEELVTL 690
                 5567889************************************************************7 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.8   0.1   3.9e-67   5.9e-65       1     346 [.     153     511 ..     153     521 .. 0.84
   2 !   98.2   0.0   7.3e-31   1.1e-28     346     469 ..     533     691 ..     526     693 .. 0.96

  Alignments for each domain:
  == domain 1    score: 217.8 bits;  conditional E-value: 3.9e-67
   TIGR01438   1 ydydliviGgGsGGlaaakeaakl.gakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGkalkdskkyGwnveeq..vkhdweklskavqdrikslnfsyrvalrekkvkyinayael.vdkd.....vikatdk...........kkkeeilsakrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvlvrs.illrGfdqdcavkvkeylkeqGvkfkeqv.lpkkvekvea..kvlvkftd.kdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkds 346
                 +dydl viG+GsGG+a+a++aa+  ++ v++ ++           +GGtcvnvGc+pkk++ +aa + +++++ ++yG+++ ++  +  dw  l ++ +  i+ ln +y  +l+++ v+ + + a+l +d++     v++ +++           +   ++++ak++liatG  p +p + eG  e +itsd +f l+++p  ++vvGa+y+a+e aG l+alg d ++++r    +r +d  + + + + l +qG+ + ++     kve+v +  + lvk    +d ++ ++ d v+ a Gr + ++ l+l n gv +   sg i++de ++t+ +++yavGd+  +  eltpvai aG+ ladrlf+  
  MMETSP1061-20121228|6771_1 153 FDYDLFVIGAGSGGIASARRAASTwNKTVAVAEA---------KRLGGTCVNVGCVPKKVLWNAASIAETVHEMHRYGFHYADEdaITFDWSFLKEQRDLYIRRLNSIYERNLKNSGVERMRGTARLsKDPNtvhveVVEEVKNwtkekalnittRIVTKTVTAKHILIATGGYPVLP-EGEGIGEHCITSDGFFELEEQPRNAVVVGAGYIAVELAGVLQALGTDTKLVLRKdQAMRSLDPLIRNTLDDELVKQGIEIYRNTgGLAKVEEVVNdaQDLVKRVHlHDGSVIDDVDLVIVAPGRAPLVEPLQLSNRGVVT-SASGHIVTDENSETSADGVYAVGDV-SGPIELTPVAIAAGRRLADRLFGTD 511
                 59******************99861555555433.........359********************************99876667****************************************9557774444333333333322233222122346899***************.59**********************************************988875278*********************998776256899987433466666555145567899***********************965.679*********************8.5789******************753 PP

  == domain 2    score: 98.2 bits;  conditional E-value: 7.3e-31
   TIGR01438 346 skeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkds....................................skcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeefvkls 469
                 +++ v yenvpt +f+   +g++Gl+e +a+ekyG ++++v++s+f ++ y + + +++                                     k  +k+vc    dervvGlh++G  a e++qGf va+++g +k d+d++++ihp++aee+v+l+
  MMETSP1061-20121228|6771_1 533 TQKRVSYENVPTVIFSHPPIGTIGLTEPQAIEKYGADAIKVYQSKFSNMFYGIWNADETassssslsgkqqhypkpysslrepsakplvpimdekPKTAMKLVCAG-PDERVVGLHVIGMGADELLQGFGVAIKMGATKADFDDCMAIHPTAAEELVTLH 691
                 56789*************************************************9999999********************************9989999****86.578***********************************************997 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.8   0.1   1.3e-69   1.9e-67       2     376 ..     155     578 ..     154     583 .. 0.89
   2 !   26.7   0.0   3.1e-09   4.7e-07     386     447 ..     626     687 ..     616     691 .. 0.92

  Alignments for each domain:
  == domain 1    score: 225.8 bits;  conditional E-value: 1.3e-69
   TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkv.alvekeklGGtClnvGCiPtKalLksaevveelkeakelgieven...vkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklld.kkevevkkekke.................kkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklkkkgvkiltna....kvtevekeedevv..veakkkevetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekiagkeks......................eidykavPsviytePevasvGlteeqakeeg..ievkvgkfpf 376
                 yd+ viG+G gG  +A raa +  k+ a+ e ++lGGtC+nvGC+P K l ++a ++e+++e++++g++ ++   +++d++ l+e+++  +++l++  +  lk+ +ve + G+a+l++ +++v+v+  ++                  k+++ak+i+iAtG  p  +++  e  ++  its++ +el+e+p++ v+vG+G+i vE+a +++ lG++  ++  +d+ +  ld  + ++l ++l k+g++i+ n+    kv+ev ++++++v  v+ +++     +++ v+va Gr p +e l+l + gv +   g i++de+ +t+++g+ya+GDv g++ L  vA + g   a++++g+ +                        + y+ vP+vi+++P + ++Glte qa e++   ++kv + +f
  MMETSP1061-20121228|6771_1 155 YDLFVIGAGSGGIASARRAASTWNKTvAVAEAKRLGGTCVNVGCVPKKVLWNAASIAETVHEMHRYGFHYADedaITFDWSFLKEQRDLYIRRLNSIYERNLKNSGVERMRGTARLSKdPNTVHVEVVEEVknwtkekalnittrivtKTVTAKHILIATGGYPVLPEG--EGIGEHCITSDGFFELEEQPRNAVVVGAGYIAVELAGVLQALGTDTKLVLRKDQAMRSLDPLIRNTLDDELVKQGIEIYRNTgglaKVEEVVNDAQDLVkrVHLHDG-SVIDDVDLVIVAPGRAPLVEPLQLSNRGVVTSASGHIVTDENSETSADGVYAVGDVSGPIELTPVAIAAGRRLADRLFGTDSDrsggnsnsnsnsnsnklrptqkRVSYENVPTVIFSHPPIGTIGLTEPQAIEKYgaDAIKVYQSKF 578
                 9*******************987765155577************************************9655578*****************************************875566666544332346677888888888889****************9999..6666679*************************************************************************964444899777777776646666666.466789************************************************************************98776789999999*********999999*************************9886333455555555 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 3.1e-09
   TIGR01350 386 eetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEai 447
                 e+ +  +k+++   +++++G+h++g  a el++ + +a+++++t  +    +  HPt +E +
  MMETSP1061-20121228|6771_1 626 EKPKTAMKLVCAGPDERVVGLHVIGMGADELLQGFGVAIKMGATKADFDDCMAIHPTAAEEL 687
                 5578899***************************************************9965 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.6   1.5   5.9e-66     9e-64       4     402 ..     155     585 ..     153     591 .. 0.83
   2 !   35.0   0.0   8.4e-12   1.3e-09     409     470 ..     629     690 ..     616     694 .. 0.92

  Alignments for each domain:
  == domain 1    score: 213.6 bits;  conditional E-value: 5.9e-66
   TIGR01423   4 ydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtgaqymdtlresagfgwel.daesvkanwkaliaaknkavldindsyedmfkdteglefflgfgale.dknvvlv...resad.pksk........vkerldaeyillatgswpqmlkiegi.elcissneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvangidvrtne.npakvek....nadgskhvvfesgkel.dvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtvfa..................skprktd....htkvasavfsippigvcglveeeaakky..ekvavyessftplmhni 402
                 ydl vigagsgg+ +   aas ++k vav + ++         lggtcvnvgcvpkk++   a   +t+ e   +g+ + d +++  +w  l   ++  +  +n  ye  +k+  g+e ++g   l  d n+v v    e  +  k k        v +++ a++il+atg +p   + egi e+ci+s+  f lee p+ +++vg gyi+ve+ag+++a    g + +l+ r+d+ +r +d  +r+ l ++lv +gi++  n    akve       d  k v +  g+ + dvd+v++a gr p  + lql + gv  +  g i  de s+t  d +ya+gdv++ + ltpvai  g  + d +f+                  +k r t+    + +v + +fs ppig+ gl+e +a  ky  + + vy+s f+ +++ i
  MMETSP1061-20121228|6771_1 155 YDLFVIGAGSGGIASARRAASTWNKTVAVAEAKR---------LGGTCVNVGCVPKKVLWNAASIAETVHEMHRYGFHYaDEDAITFDWSFLKEQRDLYIRRLNSIYERNLKN-SGVERMRGTARLSkDPNTVHVevvEEVKNwTKEKalnittriVTKTVTAKHILIATGGYPVLPEGEGIgEHCITSDGFFELEEQPRNAVVVGAGYIAVELAGVLQA---LGTDTKLVLRKDQAMRSLDPLIRNTLDDELVKQGIEIYRNTgGLAKVEEvvndAQDLVKRVHLHDGSVIdDVDLVIVAPGRAPLVEPLQLSNRGVVTSASGHIVTDENSETSADGVYAVGDVSGPIELTPVAIAAGRRLADRLFGtdsdrsggnsnsnsnsnsNKLRPTQkrvsYENVPTVIFSHPPIGTIGLTEPQAIEKYgaDAIKVYQSKFSNMFYGI 585
                 9****************************98764.........9********************************99758899*************************9997.59999***9999624566654111332221111111222223778899*******************878*********************************976...7999*********************************88762568887522114577899999999887369************************************************************************7333333333322222222233434311114578899********************96667899*****9988766 PP

  == domain 2    score: 35.0 bits;  conditional E-value: 8.4e-12
   TIGR01423 409 kfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeelcsm 470
                 k  +k+v    d  v+g+h++g  + e++q  ++++k++a  +df + + +hpt+aeel+++
  MMETSP1061-20121228|6771_1 629 KTAMKLVCAGPDERVVGLHVIGMGADELLQGFGVAIKMGATKADFDDCMAIHPTAAEELVTL 690
                 55679999999************************************************876 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.2   0.9   1.2e-59   1.8e-57       1     330 [.     155     509 ..     155     516 .. 0.88
   2 !   15.6   0.0   8.7e-06    0.0013     326     366 ..     527     567 ..     518     580 .. 0.85
   3 !   20.7   0.0   2.5e-07   3.8e-05     387     446 ..     628     687 ..     621     690 .. 0.93

  Alignments for each domain:
  == domain 1    score: 193.2 bits;  conditional E-value: 1.2e-59
   TIGR02053   1 ydlviiGsGaaafaaaikaaelg.akvvlverGilGGtCvnvGCvPSKallraaevaklakkas.vgllaa.evevdle.elleqkkevveelRkeKYedvlesydavdllegkakf.kdektvkvdl...................gkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellaeeGvevvksa..kvkavskrnggkklv.tvekndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAenalg 330
                 ydl +iG G++++a+a +aa +  + v++ e   lGGtCvnvGCvP K+l +aa++a++ ++ + +g + a e ++ ++ + l++++++     ++ Ye  l++  +v+ ++g+a++ kd++tv+v+                     +++v+ak++liAtG  p  Pe +G+ e   +ts+ ++el++ p++ vv+G+g+iavEla +++ lG +++l+ r ++ + + +p i +++ + l ++G+e+ +++   +k  ++ n+ + lv +v+ +d++   ++d ++vA GR+p v++L+L++ gv ++ +G+i+ de+++ts+ ++yA GDv + ++l  vA ++G   A+  +g
  MMETSP1061-20121228|6771_1 155 YDLFVIGAGSGGIASARRAASTWnKTVAVAEAKRLGGTCVNVGCVPKKVLWNAASIAETVHEMHrYGFHYAdEDAITFDwSFLKEQRDLYIRRLNSIYERNLKNS-GVERMRGTARLsKDPNTVHVEVveevknwtkekalnittriVTKTVTAKHILIATGGYPVLPEGEGIGEH-CITSDGFFELEEQPRNAVVVGAGYIAVELAGVLQALGTDTKLVLRKDQAMRSLDPLIRNTLDDELVKQGIEIYRNTggLAKVEEVVNDAQDLVkRVHLHDGSVIDDVDLVIVAPGRAPLVEPLQLSNRGVVTSASGHIVTDENSETSADGVYAVGDVSGPIELTPVAIAAGRRLADRLFG 509
                 89**************998877626677888899***********************999988778877551556777635789999999888899*********.5*********9557899999877889999999999998777677788999*****************995.79***********************************************************************9987434444455555555514566666666689*****************************************************************99998877 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 8.7e-06
   TIGR02053 326 enalggaeakldlevlPkvvFtdPevAsvGlteeelakagi 366
                  n l  +++++ +e +P+v+F +P + ++Glte +++++  
  MMETSP1061-20121228|6771_1 527 SNKLRPTQKRVSYENVPTVIFSHPPIGTIGLTEPQAIEKYG 567
                 688888999***************************99844 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 2.5e-07
   TIGR02053 387 trGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEgl 446
                  +  +Klv      +v+g +v++  A+e+++ + +aik+g+t  d  d +++++t aE l
  MMETSP1061-20121228|6771_1 628 PKTAMKLVCAGPDERVVGLHVIGMGADELLQGFGVAIKMGATKADFDDCMAIHPTAAEEL 687
                 566789999999*********************************************976 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.6   0.4     2e-60   3.1e-58       2     385 ..     154     591 ..     153     602 .. 0.81
   2 !    6.7   0.0     0.004       0.6     386     443 ..     629     685 ..     623     690 .. 0.83

  Alignments for each domain:
  == domain 1    score: 195.6 bits;  conditional E-value: 2e-60
   TIGR03452   2 hydliiiGtGsGnsilderfe...dkriaivekGtfGGtclnvGciptkmfvyaaevakevkesarlgid.aeidsv..rwpdivsr..vfedridpi.....aasG.eeyr...rgdktpn...idvyesharfvgrktlrted...geeitadqvviaaGsrpvipeaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserft.elakkkfdvrlgr....nvtaaeqdddg.v.tlelddGstve.advllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvsspyqlkhvanaearvvkhnllkd.................edlk....kadhdfvpaavftdpqiatvGlteqearea.Gld.itvkvqdygdvayG.wamedt 385
                 +ydl +iG+GsG      r +   +k++a+ e   +GGtc+nvGc+p k+   aa +a++v+e  r+g + a+ d +  +w+ + ++  ++ +r++ i      +sG e+ r   r +k pn   ++v e+  +++ +k l++ +   ++++ta++++ia+G+ pv+pe  +  g +  t++    l+e+p++ v+vG+Gyia+e+a v++alGt+  lv r ++ +r ld  i +++  el k+ +++ +++    +v ++ +d++  v  ++l dGs+++  d+++va Gr p  + l++++ Gv ++  g++  de   tsa+gv+a+Gdvs p +l  va a  r +++ l                    ++l+    ++ +++vp+ +f++p i+t+Glte +a e+ G d i+v   +++++ yG w  ++t
  MMETSP1061-20121228|6771_1 154 DYDLFVIGAGSGGIASARRAAstwNKTVAVAEAKRLGGTCVNVGCVPKKVLWNAASIAETVHEMHRYGFHyADEDAItfDWSFLKEQrdLYIRRLNSIyernlKNSGvERMRgtaRLSKDPNtvhVEVVEEVKNWTKEKALNITTrivTKTVTAKHILIATGGYPVLPEG-EGIGEHCITSDGFFELEEQPRNAVVVGAGYIAVELAGVLQALGTDTKLVLRKDQAMRSLDPLIRNTLDdELVKQGIEIYRNTgglaKVEEVVNDAQDlVkRVHLHDGSVIDdVDLVIVAPGRAPLVEPLQLSNRGVVTSASGHIVTDENSETSADGVYAVGDVSGPIELTPVAIAAGRRLADRLFGTdsdrsggnsnsnsnsnsNKLRptqkRVSYENVPTVIFSHPPIGTIGLTEPQAIEKyGADaIKVYQSKFSNMFYGiWNADET 591
                 7***********87766665423379******************************************97444444323898775422378888887622222345624455222234567644479999999999***999886233466****************997.56688999********************************************************999625888889987764222246666666666342599******963699********************************************************************9876689***********99966651111556789*********************9984443266666789*****95655544 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.004
   TIGR03452 386 eglakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpe 443
                 ++ +kl++     +++G h+iG+ a  l+q +  a+ +g + +++      ihp+ +e
  MMETSP1061-20121228|6771_1 629 KTAMKLVCAGPDERVVGLHVIGMGADELLQGFGVAIKMGATKADFDD-CMAIHPTAAE 685
                 5567999999999**************************99999865.5678886554 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3       3.8   5.7e+02       3      18 ..     158     173 ..     157     188 .. 0.74
   2 !   63.0   0.5   3.1e-20   4.8e-18     146     283 ..     340     487 ..     272     500 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.8
   TIGR03385   3 vivGgvaaGasaAsrv 18 
                  ++G++++G++ A r+
  MMETSP1061-20121228|6771_1 158 FVIGAGSGGIASARRA 173
                 69*******9988765 PP

  == domain 2    score: 63.0 bits;  conditional E-value: 3.1e-20
   TIGR03385 146 kkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekkeielrlne.evksveg.....eekve..vltsgkvy.qaDlvilavGvkPnselik..ssqlklgkkGaikvnekfqtsveniyaiGDva 283
                 +++ +++vv+G+Gyi++e++  l++ g + +l+ r+++  +++lD  i + + +el k++ie+  n   + +ve+     ++ v+   l +g+v+ ++Dlvi+a G  P +e ++  + ++ +   G i+++e+ +ts + +ya+GDv 
  MMETSP1061-20121228|6771_1 340 EEQPRNAVVVGAGYIAVELAGVLQALGTDTKLVLRKDQA-MRSLDPLIRNTLDDELVKQGIEIYRNTgGLAKVEEvvndaQDLVKrvHLHDGSVIdDVDLVIVAPGRAPLVEPLQlsNRGVVTSASGHIVTDENSETSADGVYAVGDVS 487
                 57899*********************************9.99*******************9755531333333211111223333378999997369***********99865422668***************************96 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.5   0.6   6.2e-19   9.4e-17      92     278 ..     302     487 ..     264     514 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.5 bits;  conditional E-value: 6.2e-19
   TIGR02374  92 grtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelekkGltvllek....etveivkesvekaerlrfkDGssle.adlvvlaaGirPrde.La.aeaGlkvndrrGiivndsmqtsdPdiyavGeca 278
                  +t++  ++++atG yp ++  +G  ++ ++        d +    ++ ++a+v+G+G + +e a  L+ lG d++ +    + m + lD    + L  el k+G+ ++ ++    + +e+v++  + ++r++++DGs+++ +dlv++a G  P  e L   + G+  +  + i++++  +ts   +yavG+++
  MMETSP1061-20121228|6771_1 302 TKTVTAKHILIATGGYPVLPEGEGIGEHCIT-------SDGFFELEEQPRNAVVVGAGYIAVELAGVLQALGTDTKLVLRKDQAM-RSLDPLIRNTLDDELVKQGIEIYRNTgglaKVEEVVNDAQDLVKRVHLHDGSVIDdVDLVIVAPGRAPLVEpLQlSNRGVVTSASGHIVTDENSETSADGVYAVGDVS 487
                 4666677788888888888877777666554.......356667778999****************************9999999.67********************99662222456788888999************549***********8764431356888888999******************986 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.2     0.013         2       1      37 [.     155     192 ..     155     199 .. 0.76
   2 !   50.4   0.1   1.9e-16   2.9e-14      76     277 ..     279     489 ..     259     504 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.013
   TIGR01292   1 ydviiiGaGpaGltaaiYaaranlktlli.egkeaggq 37 
                 yd+ +iGaG +G+++a  aa +  kt+ + e k+ gg 
  MMETSP1061-20121228|6771_1 155 YDLFVIGAGSGGIASARRAASTWNKTVAVaEAKRLGGT 192
                 7999************9999887777765144555555 PP

  == domain 2    score: 50.4 bits;  conditional E-value: 1.9e-16
   TIGR01292  76 leevkkvdkker..pfkvlte.dekeykakaviiAtGakarklgikgeeeflgrGvs.yCavCDgalfknk...evavvGggdsAveealyLskiakkVtlvhrrdk.lraekillerlkkne....kievllns....tveeikGde..kvesvkikntktkeeeelkvdgvFiaiGhepntellkel...leldeegyivvdeemrTsveGvfaaGDvrdk 277
                 +e v++v++ ++   + ++t+  +k+++ak ++iAtG  +    +  e    g+G+   C + Dg++  +    + +vvG g  Ave a +L+ ++++  lv r+d+ +r+ + l+ ++ + e     ie+  n+    +vee++ d+   v+ v++++ +       +vd v +a G  p  e l+ +   + ++ +g iv+de+++Ts +Gv+a+GDv+  
  MMETSP1061-20121228|6771_1 279 VEVVEEVKNWTKekALNITTRiVTKTVTAKHILIATGGYP----VLPE----GEGIGeHCITSDGFFELEEqprNAVVVGAGYIAVELAGVLQALGTDTKLVLRKDQaMRSLDPLIRNTLDDElvkqGIEIYRNTgglaKVEEVVNDAqdLVKRVHLHDGS----VIDDVDLVIVAPGRAPLVEPLQLSnrgVVTSASGHIVTDENSETSADGVYAVGDVSGP 489
                 3445555443331144444445679************976....3334....5566427******99654323389*****************************75378754444333332223339999999644447999988876689999998543....4557999************9987667899999***********************873 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.074        11     136     178 ..     157     201 ..     140     229 .. 0.76
   2 !   40.0   0.3     3e-13   4.5e-11     273     443 ..     344     505 ..     340     508 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.074
   TIGR01316 136 vaviGaGpaGlavaselakk.GhevtvfealhkpGGvlayG.ipe 178
                 + viGaG  G+a a   a +    v v ea +  G  +  G +p+
  MMETSP1061-20121228|6771_1 157 LFVIGAGSGGIASARRAASTwNKTVAVAEAKRLGGTCVNVGcVPK 201
                 679***********9999872567999999888888887773454 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 3e-13
   TIGR01316 273 kkvvviGgGntavdaartalrlGaevhvvyrrtredmtareeeikhaeeeGvkfefllqpveviGdeeGevkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGqea..nkiiaedsslktskrGtivvdedletsieGvfaGGdvirGeatvilalgdGkraak 443
                 ++ vv+G+G++av+ a   + lG+++++v r+ ++  +        +  + +  e + q +e+  +  G  k   +     ++ +d  ++  v   d  v+ ++d viva G+ +  +++   + ++ ts +G iv de+ ets +Gv+a Gdv    +   +a++ G+r a 
  MMETSP1061-20121228|6771_1 344 RNAVVVGAGYIAVELAGVLQALGTDTKLVLRKDQAMRSLD-----PLIRNTLDDELVKQGIEIYRNTGGLAKVEEVV----NDAQDLVKR--VHLHDGSVIDDVDLVIVAPGRAPlvEPLQLSNRGVVTSASGHIVTDENSETSADGVYAVGDVSGPIELTPVAIAAGRRLAD 505
                 578****************************988755544.....34444444456679****99988865433333....444555444..5567888999**********9975589999*******************************9988888999******9886 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.4   2.1e+02       1      18 [.     156     173 ..     156     187 .. 0.81
   2 !   41.9   0.0   7.3e-14   1.1e-11      83     308 ..     275     506 ..     253     510 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.4
   TIGR04018   1 dviiiGaGPiGlaaaiea 18 
                 d+ +iGaG  G+a+a  a
  MMETSP1061-20121228|6771_1 156 DLFVIGAGSGGIASARRA 173
                 7889*********98665 PP

  == domain 2    score: 41.9 bits;  conditional E-value: 7.3e-14
   TIGR04018  83 kklniklyeevekvkkkeekfevkt..ekeeyeakkvvvatGyydipnllnvpGedlpkvshyykeahpyvkqkvvvvGgknsavdaalelyrkgaevtlvvrgeelsekvkyWvkpdlenrikegkikalfes....evkeieeesvtletp....egeveeiendfvlaltGyrpdlelleklgveleedekipvydeetmEtnveglylaGvvaagletnkifiEngrlhaka 308
                 +++++++ eev++ +k++ + +++t   +++++ak++++atG y +    +  Ge       +++       ++ vvvG+   av+ a  l+  g++  lv+r+++  +++ + ++  l++ + ++ i+++ ++    +v+e+ +++  l ++    +g+v   + d v++  G  p +e l+  +  + ++ +  ++ +e+ Et+ +g+y +G v++ +e + + i  gr  a++
  MMETSP1061-20121228|6771_1 275 NTVHVEVVEEVKNWTKEK-ALNITTriVTKTVTAKHILIATGGYPVLPEGEGIGEHCITSDGFFELEE--QPRNAVVVGAGYIAVELAGVLQALGTDTKLVLRKDQAMRSLDPLIRNTLDDELVKQGIEIYRNTgglaKVEEVVNDAQDLVKRvhlhDGSV-IDDVDLVIVAPGRAPLVEPLQLSNRGVVTSASGHIVTDENSETSADGVYAVGDVSGPIELTPVAIAAGRRLADR 506
                 678999999999999887.566666558899*************999988889****99999998544..468899******************************************************9985434389988766543322212325555.8899***********99977655555444444566667779************************999988765 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.2      0.18        27     137     224 ..      58     149 ..      44     170 .. 0.56
   2 ?   -0.1   0.0      0.59        89     142     171 ..     150     180 ..     116     188 .. 0.75
   3 !   30.5   0.0     3e-10   4.5e-08     142     281 ..     340     487 ..     325     495 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.18
   TIGR03169 137 ekakaseetkslavvGgGaagvElalalrkrlkkrglk..aevsla.seakllqalsakvrk.lvkrllakrgievlekeevtevedealll 224
                 + a+a+++ ++l+v G G+a+    +  r  l++++    +++sla s+ ++ + +sa   + ++ ++ + +  ++ ++++ t+ +++a +l
  MMETSP1061-20121228|6771_1  58 KPASAKTRFHELTVSGTGTASASAPVTARTFLNRQSKTntQKLSLAgSARAFSSSSSATSSStTISATTTSSATTTSSATTTTSTTSSANDL 149
                 45566677779999999999998877777666655544356788886444555544444444044444444444444444444444444333 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.59
   TIGR03169 142 seetk.slavvGgGaagvElalalrkrlkkr 171
                 +++   +l v+G+G +g+  a   +  ++k+
  MMETSP1061-20121228|6771_1 150 DHGFDyDLFVIGAGSGGIASARRAASTWNKT 180
                 444445899********98887777777765 PP

  == domain 3    score: 30.5 bits;  conditional E-value: 3e-10
   TIGR03169 142 seetkslavvGgGaagvElalalrkrlkkrglkaevslaseakllqalsakvrklvkrllakrgievlekeevtevede..........alllaegetl.eadavllatgaka...pawLaesglsldedGflavkktLqslshpevFaaGDca 281
                 +e++++ +vvG+G  +vEla+ l+ + ++++l       ++ + ++ l + +r++++  l k+gie+ +++      +e          ++ l++g+ + ++d v++a g  +   p  L++ g+ + ++G + ++++ ++ s + v+a+GD+ 
  MMETSP1061-20121228|6771_1 340 EEQPRNAVVVGAGYIAVELAGVLQALGTDTKLV-----LRKDQAMRSLDPLIRNTLDDELVKQGIEIYRNTGGLAKVEEvvndaqdlvkRVHLHDGSVIdDVDLVIVAPGRAPlvePLQLSNRGVVTSASGHIVTDENSET-SADGVYAVGDVS 487
                 5678899***************99999888876.....689999************************997543333334555999999999999999835899999999876443678*****************99998.999*******95 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.037       5.6       5      41 ..     155     192 ..     153     233 .. 0.83
   2 !   26.3   0.0   3.7e-09   5.6e-07      90     283 ..     284     487 ..     262     527 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.037
   TIGR03143   5 ydlvviGgGpaglsaGiyagraklkvl.iiekdelGGq 41 
                 ydl viG+G+ g+++   a+ +  k++ + e ++lGG 
  MMETSP1061-20121228|6771_1 155 YDLFVIGAGSGGIASARRAASTWNKTVaVAEAKRLGGT 192
                 9************9988888776665526678888886 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 3.7e-09
   TIGR03143  90 diktvktakgdlkalavliatGasprklGfeGeeef..tGrGva.ycatcdGeff...tGldvlviGgGfaaaeeavfltkyakkvtvivrepdftcakaiaekvkanPkie.vkfnvelkevtGddvlreakfvnnatGeeteyk...akkdegtfGvfvfvGyvPsse...lfkgkvelderGyvvtnedletnveGvyaaGdlr 283
                 ++k+   +k+   +  ++  t ++   l  +G       G G++ +c t dG f    +  + +v+G+G+ a e a  l   +    +++r+++    +++   +++    e vk  +e+   tG    +  ++vn a    ++ +       ++   v v  G +P  e   l +  v     G++vt+e+ et+ +Gvya+Gd+ 
  MMETSP1061-20121228|6771_1 284 EVKNWTKEKALNITTRIVTKTVTAKHILIATGGYPVlpEGEGIGeHCITSDGFFEleeQPRNAVVVGAGYIAVELAGVLQALGTDTKLVLRKDQAM--RSLDPLIRNTLDDElVKQGIEIYRNTGGL-AKVEEVVNDAQDLVKRVHlhdGSVIDDVDLVIVAPGRAPLVEplqLSNRGVVTSASGHIVTDENSETSADGVYAVGDVS 487
                 5554444444444444444444444444333333221246677548******66333346789****************************99753..44444444443333289999*99988643.34445666666555444400044445566688999***98762224556677888**********************85 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.62        95     197     232 ..      50      85 ..      39      91 .. 0.66
   2 !    7.6   0.1    0.0017      0.26     200     249 ..     142     193 ..     123     201 .. 0.78
   3 !   17.3   0.3     2e-06    0.0003     356     488 ..     347     488 ..     269     505 .. 0.58

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.62
   TIGR03140 197 ekaaek.aeeaeeekekydvlvvGgGPagaaaaiyaa 232
                 ++  e+  + a+ + + ++++v G+G a+a+a +  a
  MMETSP1061-20121228|6771_1  50 TTLEEEaGKPASAKTRFHELTVSGTGTASASAPVT-A 85 
                 44444413444555566789999******999874.4 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0017
   TIGR03140 200 aekaeeaeeekekydvlvvGgGPagaaaaiyaarkGlkvalvae..riGGqv 249
                 +++++++ ++   yd+ v+G+G  g a+a  aa    k+  vae  r+GG  
  MMETSP1061-20121228|6771_1 142 TTSSANDLDHGFDYDLFVIGAGSGGIASARRAASTWNKTVAVAEakRLGGTC 193
                 3345566666778****************99999999988887544999975 PP

  == domain 3    score: 17.3 bits;  conditional E-value: 2e-06
   TIGR03140 356 aviGGGnsGieaaidlaGivehvt.vlefadelka.dkvlveklks...lsnvdilts....aktkeivgdg.dkvtglkykdrsseeekkleldGvfvqiG...lvpnteflkdavelnrrGeividergrtsvkGifaaGdvtt 488
                  v+G G   +e a  l  + ++   vl   +++++ d ++ ++l++   ++ ++i  +    ak +e+v d  d v+ ++++d s  +    ++d v v  G   lv   ++ +  v +++ G iv+de+++ts++G++a Gdv+ 
  MMETSP1061-20121228|6771_1 347 VVVGAGYIAVELAGVLQALGTDTKlVLRKDQAMRSlDPLIRNTLDDelvKQGIEIYRNtgglAKVEEVVNDAqDLVKRVHLHDGSVID----DVDLVIVAPGrapLVEPLQLSNRGVVTSASGHIVTDENSETSADGVYAVGDVSG 488
                 4555565555544444444333331333334444424444444443222355666554222245666666641345555555555444....344566666622244445555666999************************985 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       7.6   1.2e+03     153     184 ..      16      47 ..      11      52 .. 0.84
   2 !    5.7   0.0    0.0079       1.2     147     292 ..     158     316 ..     152     325 .. 0.75
   3 !   15.7   0.0   7.1e-06    0.0011     390     472 ..     423     505 ..     404     510 .. 0.83

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 7.6
   TIGR01317 153 PaGlaaadqlnraGhtvtvferedrvGGllry 184
                  a  a a++ +r+  +v+v   +dr+G l  y
  MMETSP1061-20121228|6771_1  16 TALRAVAKNHTRTAVSVSVSLPSDRIGILAEY 47 
                 5666889999999999999999****999887 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0079
   TIGR01317 147 avvGsGPaGlaaadqlnra.GhtvtvferedrvGG.llryG.iPnlkl.dkeiverridlleaeGvdfvtnveiG.........kdisaeelkedfdavvlatGatkprdlpieGrelegihya.mefleaatkalldddlkdkekikakgkkvvviGGG 292
                  v+G+G  G+a+a + + +  +tv+v e   r GG  +  G +P+  l + + +   ++ ++  G ++  +  i          +d+   +l+  ++  +  +G +++r  +   ++ + +h   +e +++ tk ++ +    + + ++  k++++  GG
  MMETSP1061-20121228|6771_1 158 FVIGAGSGGIASARRAASTwNKTVAVAEA-KRLGGtCVNVGcVPKKVLwNAASIAETVHEMHRYGFHYADEDAITfdwsflkeqRDLYIRRLNSIYERNLKNSGVERMRGTARLSKDPNTVHVEvVEEVKNWTKEKALNITTRIVTKTVTAKHILIATGG 316
                 59***********9988772566777775.56666257777467655535669****************9999998888888888888899999999999999999999999888998888864145555555544444444556777788888887777 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 7.1e-06
   TIGR01317 390 eleevpgseevleadlvllalGfvgpeqa.llddlgvdkdergnikaeldesetsidGvfaaGdarrGqslivwaineGreaar 472
                 + +++++   + + dlv++a G     +   l++ gv  ++ g+i  ++++sets dGv+a+Gd+     l   ai+ Gr+ a 
  MMETSP1061-20121228|6771_1 423 KRVHLHDGSVIDDVDLVIVAPGRAPLVEPlQLSNRGVVTSASGHI-VTDENSETSADGVYAVGDVSGPIELTPVAIAAGRRLAD 505
                 55667777788899********8876665479999**********.6788889***************************9885 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.62        94     540     579 ..     157     196 ..     134     224 .. 0.73
   2 !   18.7   0.2   3.3e-07   5.1e-05     668     845 ..     345     517 ..     337     543 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.62
   TIGR03315 540 vaviGaGPaGlsagyflaraGlpvtvfekkekagGvvkni 579
                 + viGaG  G++++   a    +   + + ++ gG++ n+
  MMETSP1061-20121228|6771_1 157 LFVIGAGSGGIASARRAASTWNKTVAVAEAKRLGGTCVNV 196
                 5689999999988877666544433344445567776665 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 3.3e-07
   TIGR03315 668 rvvvvGgGntamdaaraalrvpGvekvtvvyrrtkkemPaskeeleealedGvefkellsPekfedgklvcekmklgekdasGrrrpvetgelveleadaviaavGeqvdte..llkklgieldekgkvvvneetketsvtnvfviGdakkGPativ.eaiadgrkaakailsrenlnsdl 845
                 + vvvG+G +a++ a   l+  G ++  v+  r+ + m +    ++++l+d +  k+  + ++   g  ++e++  +++d   +r  ++ g +++ ++d vi+a G+    e   l++ g+ + ++g++v +e+ +ets ++v+ +Gd++ GP  +   aia gr+ a+ ++  ++ +s  
  MMETSP1061-20121228|6771_1 345 NAVVVGAGYIAVELAGV-LQALGTDTKLVL--RKDQAMRSLDPLIRNTLDDELV-KQGIEIYRNTGGLAKVEEVVNDAQDLV-KRVHLHDGSVID-DVDLVIVAPGRAPLVEplQLSNRGVVTSASGHIVTDEN-SETSADGVYAVGDVS-GPIELTpVAIAAGRRLADRLFGTDSDRSGG 517
                 56788888888888754.555565554333..5556777777777777776654.333444555566666666666666654.555677777877.8*********9865551166789**************9.9************96.887775369*********998777665544 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.7e-06   0.00071     139     175 ..     360     397 ..     355     433 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.7e-06
   TIGR01186 139 GlaralaaePdlll.mdeafsaldPlirdelqdelvkl 175
                 G+++al ++ +l+l  d+a+ +ldPlir+ l delvk 
  MMETSP1061-20121228|6771_1 360 GVLQALGTDTKLVLrKDQAMRSLDPLIRNTLDDELVKQ 397
                 9**********9984599*****************985 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   3.5   3.2e-05    0.0049       2     165 ..     158     320 ..     157     329 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.2e-05
   TIGR00275   2 iiiGgGaaGlmaAitaae.egakVlllEknkkigkKllvsGgGrcNltnseeteelvakipengkflksalsrFsnkdliaf...feelgvelkveedgrvFPvsdsaksvldaLlke.l..kelgvevlteskvksi.kkeeekfevetekkeleakkvilatGgksypkl 165
                  +iG+G  G+ +A +aa+  ++ V++ E+++  g  + v    +  l n++++ e v+++ +          ++  +d+i f   f ++  +l++++ + ++  + + + v ++  ++ l  + + v+v++ ++vk++ k+++ +++ ++ +k+++ak++++atGg  yp l
  MMETSP1061-20121228|6771_1 158 FVIGAGSGGIASARRAAStWNKTVAVAEAKRLGGTCVNVGCVPKKVLWNAASIAETVHEMHR-------YGFHYADEDAITFdwsFLKEQRDLYIRRLNSIYERNLKNSGVERMRGTArLskDPNTVHVEVVEEVKNWtKEKALNITTRIVTKTVTAKHILIATGG--YPVL 320
                 69**************9978999********9999999998888888888888884444433.......333456666665544677888899999******999999999887543313114468999999******7777777888889***************..7765 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1       3.4   5.1e+02     145     178 ..     158     191 ..     154     203 .. 0.75
   2 !   16.5   0.0   3.6e-06   0.00054     375     461 ..     424     507 ..     393     510 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 3.4
   TIGR01318 145 aviGaGpaGlacadvlaraGvkvvvfdrypeiGG 178
                  viGaG  G+a a + a +  k+v     +++GG
  MMETSP1061-20121228|6771_1 158 FVIGAGSGGIASARRAASTWNKTVAVAEAKRLGG 191
                 5899999999999888777666666666666665 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 3.6e-06
   TIGR01318 375 aeivaGseavleadvviiafGfephame.wlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeGrkaaegi 461
                  + ++    + + d vi+a G  p   +  l+++g+ ++  G+iv++e+     +ts + ++a Gd+    +l   a+a+Gr+ a+ +
  MMETSP1061-20121228|6771_1 424 RVHLHDGSVIDDVDLVIVAPGRAPLVEPlQLSNRGVVTSASGHIVTDEN----SETSADGVYAVGDVSGPIELTPVAIAAGRRLADRL 507
                 4455555567799***********987735999*************954....569999************************99875 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.5e-05    0.0022     174     209 ..     360     396 ..     355     405 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.5e-05
   TIGR03415 174 Glarafateadill.mdePfsaldPliraklqdelle 209
                 G+ +a+ t+++++l  d+ + +ldPlir+ l del++
  MMETSP1061-20121228|6771_1 360 GVLQALGTDTKLVLrKDQAMRSLDPLIRNTLDDELVK 396
                 777899****988736999****************97 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.2   0.00012     0.018       1     147 [.     155     316 ..     155     326 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00012
   TIGR02032   1 yDvvvvGaGpaGssaAlrlakk.GlrVlllekkelprekeCggalskraveelelpkelivnevrkariispngekveieee...eeealvidRkefDelLaekAqeagaelllettvlsveied.............ekvkvevred.ekkevtakivigAdGa 147
                 yD+ v+GaG  G + A+r+a++   +V++ e k+l +     g ++k+++  +     + v e     ++   ++  + ++    e++ l i+R  +     ++ +++g+e + +t+ ls   +              +++ +++ +  + k+vtak++ +A+G 
  MMETSP1061-20121228|6771_1 155 YDLFVIGAGSGGIASARRAASTwNKTVAVAEAKRLGGTCVNVGCVPKKVLWNAASIA-ETVHEMHRYGFHYADEDAITFDWSflkEQRDLYIRR--LNSIYERNLKNSGVERMRGTARLSKDPNTvhvevveevknwtKEKALNITTRiVTKTVTAKHILIATGG 316
                 9***********999*99998834567888999999998889999999887777644.567777777777777777777777776555555555..555555555566666555555544332224444555777776555555555568899999999999985 PP

>> TIGR01176  fum_red_Fp: fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1      0.77   1.2e+02       3      31 ..     154     183 ..     152     196 .. 0.78
   2 ?    2.0   0.0      0.09        14     450     503 ..     386     440 ..     362     444 .. 0.85
   3 ?    8.0   0.0    0.0013       0.2     342     380 ..     447     487 ..     442     506 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.77
   TIGR01176   3 qadiavigaggaglraaiaaaea.nphlev 31 
                 + d+ vigag  g+ +a  aa + n  + v
  MMETSP1061-20121228|6771_1 154 DYDLFVIGAGSGGIASARRAASTwNKTVAV 183
                 56999*********9998777662444444 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.09
   TIGR01176 450 iraemga.tleegagiyrdeellqktidklaelkerfkrvsikdkskvfntdlly 503
                 ir+ ++   +++g  iyr+   l k  + +++ ++  krv+++d s + + dl+ 
  MMETSP1061-20121228|6771_1 386 IRNTLDDeLVKQGIEIYRNTGGLAKVEEVVNDAQDLVKRVHLHDGSVIDDVDLVI 440
                 56665541457899************999****************9999999875 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0013
   TIGR01176 342 pvkelipv..rpvvhytmggietdincetrikglfavgeca 380
                 p +e++ +  r vv    g i td+n+et   g++avg+++
  MMETSP1061-20121228|6771_1 447 PLVEPLQLsnRGVVTSASGHIVTDENSETSADGVYAVGDVS 487
                 56666544338899999*********************986 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00085      0.13       2      44 ..     155     197 ..     154     249 .. 0.77
   2 ?   -2.7   0.1       3.1   4.7e+02       5      34 ..     347     376 ..     345     378 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00085
   TIGR00031   2 fdyiivGaGlsGivlae.ilaklnkrvlvvekrnhiGGncydev 44 
                 +d+ ++GaG  Gi  a   ++  nk v v e  +++GG c +  
  MMETSP1061-20121228|6771_1 155 YDLFVIGAGSGGIASARrAASTWNKTVAVAEA-KRLGGTCVNVG 197
                 99**************9667788888888886.579**997654 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 3.1
   TIGR00031   5 iivGaGlsGivlaeilaklnkrvlvvekrn 34 
                 ++vGaG   + la +l+ l+    +v +++
  MMETSP1061-20121228|6771_1 347 VVVGAGYIAVELAGVLQALGTDTKLVLRKD 376
                 89***************9998776666555 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1    0.0085       1.3       1      39 [.     156     193 ..     156     219 .. 0.81
   2 ?    0.5   0.0      0.27        41     175     191 ..     301     317 ..     254     320 .. 0.82
   3 ?   -1.4   0.1         1   1.6e+02     132     170 ..     386     428 ..     348     444 .. 0.74
   4 ?    2.3   0.0     0.077        12     398     420 ..     467     489 ..     455     491 .. 0.80
   5 ?   -1.7   0.0       1.3   1.9e+02      35      90 ..     515     570 ..     512     579 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0085
   TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNs 39 
                 d+ v+G+G+ G+++a +a ++  ++ v +  a+ +GG  
  MMETSP1061-20121228|6771_1 156 DLFVIGAGSGGIASARRAASTW-NKTVAVAEAKRLGGTC 193
                 5679*****************9.6666666677778865 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.27
   TIGR01813 175 kikikaakaVvlatGGf 191
                  +k++ ak++++atGG+
  MMETSP1061-20121228|6771_1 301 VTKTVTAKHILIATGGY 317
                 4678899*********9 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 1
   TIGR01813 132 ivqklskkakkegvelrlns....kvedlikddqgqvtGvkvk 170
                 i ++l +++ k+g+e+  n+    kve++++d q  v+ v+ +
  MMETSP1061-20121228|6771_1 386 IRNTLDDELVKQGIEIYRNTgglaKVEEVVNDAQDLVKRVHLH 428
                 5578999999999999988655558999999999888777655 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.077
   TIGR01813 398 eVldensekpikgLfAaGEvtGg 420
                  V dense+  +g++A+G+v+G 
  MMETSP1061-20121228|6771_1 467 IVTDENSETSADGVYAVGDVSGP 489
                 4778999999***********95 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 1.3
   TIGR01813  35 iGGNsaiaaggmnaaktkiQkkkgieDskelfikdtlkggrgindpelvkklaees 90 
                  GGNs  ++   +    ++Qk+  +e  +  +++   +g  g  +p+ ++k    +
  MMETSP1061-20121228|6771_1 515 SGGNSNSNSNSNSNKLRPTQKRVSYENVPTVIFSHPPIGTIGLTEPQAIEKYGADA 570
                 79*******9999999*****99999999988888777777777776666655555 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.6    0.0029      0.44       2      35 ..     158     191 ..     157     196 .. 0.89
   2 ?    2.8   0.6     0.055       8.4       1      32 [.     346     377 ..     346     379 .. 0.94

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0029
   TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGG 35 
                  ViGaG gG+A+A r a+   ++  + + +++GG
  MMETSP1061-20121228|6771_1 158 FVIGAGSGGIASARRAASTWNKTVAVAEAKRLGG 191
                 6**************9999999988999999999 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.055
   TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdk 32 
                 avV+GaG     lA  L+a G++++++ ++d+
  MMETSP1061-20121228|6771_1 346 AVVVGAGYIAVELAGVLQALGTDTKLVLRKDQ 377
                 79************************998886 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.0     0.076        11      78     158 ..      73     156 ..      63     165 .. 0.68

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.076
   TIGR00601  78 KavkakaaePaatpesaptptp.satpasvaekksaaP..asaveeessaeeeatatalesedtsaesegdsdretlvvGsere 158
                  + +a+a++P ++ +     ++ ++ + s+a ++ a    +sa++ +++ + ++t++a++++++++++++ s+++ l  G +++
  MMETSP1061-20121228|6771_1  73 GTGTASASAPVTARTFLNRQSKtNTQKLSLAGSARAFSssSSATSSSTTISATTTSSATTTSSATTTTSTTSSANDLDHGFDYD 156
                 566777888888888777777756666677666555440044445555555666666777788888888889999888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        27  (0.00658216); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              27  [number of targets reported over threshold]
# CPU time: 0.75u 0.15s 00:00:00.90 Elapsed: 00:00:00.62
# Mc/sec: 1496.59
//
Query:       MMETSP1061-20121228|6772_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-194  644.2   0.0   1.7e-194  644.0   0.0    1.0  1  TIGR01885 Orn_aminotrans: ornithine--oxo-acid transaminase
   7.6e-110  365.1   0.0   8.8e-110  364.9   0.0    1.0  1  TIGR00707 argD: acetylornithine and succinylornithine transaminases
    5.4e-90  300.0   0.0    6.6e-90  299.7   0.0    1.0  1  TIGR03246 arg_catab_astC: succinylornithine transaminase family
    4.9e-71  237.3   0.0      7e-71  236.8   0.0    1.2  1  TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
    8.1e-69  230.0   0.2      4e-67  224.5   0.1    2.0  1  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase
    1.7e-68  229.4   0.0    2.1e-68  229.1   0.0    1.0  1  TIGR03372 putres_am_tran: putrescine aminotransferase
    1.3e-60  203.0   0.1      3e-58  195.3   0.0    2.0  1  TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase
    8.3e-55  183.8   0.0    1.6e-54  182.9   0.0    1.4  1  TIGR02407 ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
    7.7e-48  161.0   0.0    1.1e-47  160.4   0.0    1.3  1  TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase
    1.3e-44  150.2   0.0    3.1e-42  142.4   0.0    2.0  1  TIGR03251 LAT_fam: L-lysine 6-transaminase
    7.1e-24   82.2   0.0    2.9e-20   70.3   0.0    2.1  2  TIGR00699 GABAtrns_euk: 4-aminobutyrate aminotransferase
  ------ inclusion threshold ------
      0.013   12.3   0.0      0.024   11.4   0.0    1.4  2  TIGR01822 2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase


Domain annotation for each model (and alignments):
>> TIGR01885  Orn_aminotrans: ornithine--oxo-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  644.0   0.0    5e-197  1.7e-194       2     401 ..      39     444 ..      38     445 .. 0.98

  Alignments for each domain:
  == domain 1    score: 644.0 bits;  conditional E-value: 5e-197
   TIGR01885   2 eevieleekygahnyhplpvvlskaeGakvwdvegkryldflsaysavnqGhchpkivkalveqaqkltlssrafyndvfgefaeyvtklfGydkvlpmntGaeavetaiklarkWgykkkkipedkalilsaegnfhGrtlavislstdpesrenfGpyvpnvkkieynnlealeealeeagekvaaflvePiqGeaGvvvpddgylkkvrelckkynvlliadeiqtGiartGkllaveheevkPdivllGkalsgGvyPvsavladkevmltikpgehGstygGnPlasavavaalevlkeeklaeraeklGeelreelkkl...kkeivkevrGkGllnaividesk...angreawdlclklkekGllakptheeiirlaPPlviteeelkeaveiikkvl 401
                 +++++le+ ygahnyhplpvvl+k++G+ vwd++gk+y+dflsaysavnqGhchpki+ alv+qa++ltl+srafynd++ge+ e+vt +fG d+vlpmntG+e++etaiklarkWgy++k+i+ +ka  l+a++nf+Grtla++s s+dp+++++fGpy+p++++i+yn+l +le ++++ +e++aaf+vePiqGeaGv+vpddgy+kkv++lc+kynvlliade+qtG++rtG+ lav+h+++ Pdi++lGkalsgGv+Pvsavla++evm t+kpgehGstygGnPla++vavaalevl++ekl e+a+  G++lr+ l++l   ++  +++vrG+Gllna++i++ k    ++ +awdlc+k++++Gllakpth++iirlaPPl+iteee++++++i++k++
  MMETSP1061-20121228|6772_1  39 SQCMTLEDTYGAHNYHPLPVVLTKGSGTRVWDTDGKEYFDFLSAYSAVNQGHCHPKIIGALVDQAKQLTLTSRAFYNDALGEYCEFVTAYFGMDRVLPMNTGVEGGETAIKLARKWGYQVKGIAPNKARCLFANNNFWGRTLAAVSSSNDPTAYNEFGPYMPGFSSIPYNDLGSLEMEFQKDAENIAAFMVEPIQGEAGVMVPDDGYMKKVKKLCEKYNVLLIADEVQTGLCRTGHRLAVDHDGILPDILVLGKALSGGVLPVSAVLAKEEVMATLKPGEHGSTYGGNPLACRVAVAALEVLRDEKLDENARARGAQLRAGLESLvgsTSLPIEKVRGRGLLNAVIINQPKggyGDTGKAWDLCVKMQHNGLLAKPTHGNIIRLAPPLTITEEEIDQCLDIFEKSF 444
                 578999******************************************************************************************************************************************************************************************************************************************************************************************************************************977555679***************98744458899*******************************************9986 PP

>> TIGR00707  argD: acetylornithine and succinylornithine transaminases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.9   0.0  2.6e-112  8.8e-110       4     379 ..      51     443 ..      48     445 .. 0.95

  Alignments for each domain:
  == domain 1    score: 364.9 bits;  conditional E-value: 2.6e-112
   TIGR00707   4 qtyarlelaivrgkgakvyDveGkeYlDlvaGiavnalGHahpklvealkeqleklvhvsnlyateeqlelaeklvelsaadrvffcnsGaeanEaAlklarkaarkk...gkekkkivafknsFHGRtlgalsatgkpkykkdFeplvpgvkyveyndiealkeaidde...taavivEpiqGEgGvvpadkeflkalrelceekdvllivDEvqtGlGRtGklfayehygvePDiltlakalggGv.PigavlakeevaealtvGdHgstfGGnplacaaalavleviekeellekvkekgeilkkkleellkkki..ikevrGkGLllGieleaesl........keivkkleekGllvntagekvlrlvppLiieeeeieeavealeev 379
                 ++y  l++++++g g++v+D++GkeY D+++  + ++ GH+hpk++ al +q+++l+ +s  ++++   e  e + + +++drv   n G e  E+A+klark + ++   + +k + + ++n+F GRtl+a+s +++p   ++F+p +pg++ ++ynd+ +l+   +++   +aa +vEpiqGE+Gv+++d  ++k++++lce+++vlli DEvqtGl RtG+ +a++h g+ PDil l+kal+gGv P++avlakeev  +l++G+Hgst+GGnplac++a a+lev+++e+l e+++++g++l+  le l+ ++   i++vrG+GLl+ + +++++          ++  k++++Gll +++  +++rl+ppL+i+eeei++ ++++e+ 
  MMETSP1061-20121228|6772_1  51 HNYHPLPVVLTKGSGTRVWDTDGKEYFDFLSAYSAVNQGHCHPKIIGALVDQAKQLTLTSRAFYNDALGEYCEFVTAYFGMDRVLPMNTGVEGGETAIKLARKWGYQVkgiAPNKARCLFANNNFWGRTLAAVSSSNDPTAYNEFGPYMPGFSSIPYNDLGSLEMEFQKDaenIAAFMVEPIQGEAGVMVPDDGYMKKVKKLCEKYNVLLIADEVQTGLCRTGHRLAVDHDGILPDILVLGKALSGGVlPVSAVLAKEEVMATLKPGEHGSTYGGNPLACRVAVAALEVLRDEKLDENARARGAQLRAGLESLVGSTSlpIEKVRGRGLLNAVIINQPKGgygdtgkaWDLCVKMQHNGLLAKPTHGNIIRLAPPLTITEEEIDQCLDIFEKS 443
                 689****************************************************************************************************99877667899**************************************************998877778***********************************************************************99966****************************************************************9988888***************9986334454444577889**********************************99975 PP

>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.7   0.0   1.9e-92   6.6e-90      11     395 ..      50     446 ..      43     448 .] 0.92

  Alignments for each domain:
  == domain 1    score: 299.7 bits;  conditional E-value: 1.9e-92
   TIGR03246  11 vpvyapakfipvrgeGsrvwdqegkeyidfaGGiavnalGhahpelvealkeqaeklwhlgngytnepvlrlakklvdatfadkvffcnsGaeaneaalklarkvaldkyg..aekseivafknsfhGrtlftvsvGGqakysedfaplpegikhaayndlealkalis...dktcavivepiqGegGvvpadkaflkglrelcdrhnallifdevqtGvGrtGelyaymeyGvtpdiltsakalGgG.fpiGalltteelakvlkvGthGttyGGnplacavaekvldlvntaelleGvkqrhelfvdelekinarykv.fseirGkGlliGavltee...y..aGkakdlvnaaaeeGvlvliaGpdvvrfapslvieeeeikeGlarlekavek 395
                   +y p +++ ++g+G+rvwd++gkey df    +    Gh+hp++  al +qa++l  ++ ++ n++  +  + ++     d+v   n+G e  e+a+klark++++  g  ++k   +  +n f Grtl +vs    +   ++f+p   g + ++yndl +l+   +   ++  a++vepiqGe+Gv+ +d+ ++k++++lc+++n lli devqtG+ rtG+  a  + G+ pdil   kal gG +p+ a+l++ee+ ++lk G+hG+tyGGnplac va + l+++ + +l e  ++r +++ + le++    ++  +++rG+Gll  +++++    y  +Gka dl  + +++G+l+  + ++++r+ap l i+eeei++ l+ +ek+ ++
  MMETSP1061-20121228|6772_1  50 AHNYHPLPVVLTKGSGTRVWDTDGKEYFDFLSAYSAVNQGHCHPKIIGALVDQAKQLTLTSRAFYNDALGEYCEFVTAYFGMDRVLPMNTGVEGGETAIKLARKWGYQVKGiaPNKARCLFANNNFWGRTLAAVSSSNDPTAYNEFGPYMPGFSSIPYNDLGSLEMEFQkdaENIAAFMVEPIQGEAGVMVPDDGYMKKVKKLCEKYNVLLIADEVQTGLCRTGHRLAVDHDGILPDILVLGKALSGGvLPVSAVLAKEEVMATLKPGEHGSTYGGNPLACRVAVAALEVLRDEKLDENARARGAQLRAGLESLVGSTSLpIEKVRGRGLLNAVIINQPkggYgdTGKAWDLCVKMQHNGLLAKPTHGNIIRLAPPLTITEEEIDQCLDIFEKSFHE 446
                 569****************************99998899***************************9988888777777678***********************9988662269*************************************************987752226789*********************************************************************87747**************************************************************988777764899*******9998887422234469*********************************************98765 PP

>> TIGR00508  bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.8   0.0     2e-73     7e-71      11     417 ..      54     443 ..      47     445 .. 0.92

  Alignments for each domain:
  == domain 1    score: 236.8 bits;  conditional E-value: 2e-73
   TIGR00508  11 aepplavekaegvyltdedgkeliDgisSwwvavhGhnhpelneaikeqleklehvifaglthepaieLaekLveilpeglekvffsdsGsvavEvalKmalq..ywqnkgekekkkflalengYHGdTlgamsvgdvelfhelfeellfeqvkvpapevalekkeeekeeevleeleklleehaeeiaalivEPlvqgagGmrvyspeyLkklrelcdeydvlliaDEiatGfgrtGklFacehagvtPDilclsKaltgGylplaatltteeiyeaflsdeeekaflHghtytgnplacavAlaslelleeeeilekvkeieaqlkeeleelke..lpkvkdvRvlGaigavelkeekel..eerigekiqkkalekgvllRPl.gnviylmppyiiteeeleklveaikea 417
                 +  p++ +k++g++++d+dgke++D +s++ ++  Gh+hp++  a+ +q+++l   +   + ++   e +e +++    g+++v+  + G    E a+K+a +  y+ +   ++k + l  +n + G Tl+a+s +++ +  + f ++++    +p+ +              l +le  +++ ae+iaa++vEP +qg +G++v +  y+kk+++lc++y+vlliaDE+ tG+ rtG+  a++h g+ PDil+l+Kal+gG+lp++a+l++ee++ ++  +e      Hg+ty gnplac+vA+a+le+l++e++ e++++  aql+++le+l       +++vR  G++ av ++++k    ++  + +++ k+ ++g+l +P  gn+i l pp++iteee+++ +++++++
  MMETSP1061-20121228|6772_1  54 HPLPVVLTKGSGTRVWDTDGKEYFDFLSAYSAVNQGHCHPKIIGALVDQAKQLTL-TSRAFYNDALGEYCEFVTAYF--GMDRVLPMNTGVEGGETAIKLARKwgYQVKGIAPNKARCLFANNNFWGRTLAAVSSSNDPTAYNEFGPYMPGFSSIPYND--------------LGSLEMEFQKDAENIAAFMVEP-IQGEAGVMVPDDGYMKKVKKLCEKYNVLLIADEVQTGLCRTGHRLAVDHDGILPDILVLGKALSGGVLPVSAVLAKEEVMATLKPGE------HGSTYGGNPLACRVAVAALEVLRDEKLDENARARGAQLRAGLESLVGstSLPIEKVRGRGLLNAVIINQPKGGygDTGKAWDLCVKMQHNGLLAKPThGNIIRLAPPLTITEEEIDQCLDIFEKS 443
                 55678899*********************************************85.56779999999*****99999..9*********************872255555679************************999999*******999999887..............6789999***************.8**********************************************************************************9999......********************************************876225569*****************8885566667889*************74899******************999876 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.5   0.1   1.2e-69     4e-67      16     417 ..      57     443 ..      51     446 .. 0.89

  Alignments for each domain:
  == domain 1    score: 224.5 bits;  conditional E-value: 1.2e-69
   TIGR00700  16 rvlaakaegaelkdvdGnrlidlaagiavlnvGhshPkvveavkrqveelthtafqvvpyesyvelaeklnaiaPgsgekkavllnsGaeavenavkiarkytgrpgvva.......f.srgfhGrtnltmaltakvkPykiGfGPfapevyraPlpydyrdialdkqeslddelaaiealfvadveaeqvaavvlePvqGeGGfivpakelvaavaslckehgivliadevqtGfartGklfaieheddkPdlitvaksladG.lPlsgvvGraeildapapGglGGtyaGnPlavaaalavldiieeeglieraeqigklvkdklielkeevp.aigdvrglGamiavelvdpdttePdaalaekiaaaalaaGlllltaGifGniirlltPltisdelldeglkileaa 417
                 +v+ +k+ g+ + d dG+++ d+ ++ + +n Gh hPk++ a+  q+++lt t+     y+   +l e    ++   g  + + +n+G e  e a+k+ark+  +   +a       f ++ f Grt  +++ +   + y   fGP+ p    +P++      ++    sl+         f    +ae++aa ++eP+qGe G +vp ++++++v++lc++ +++liadevqtG+ rtG+ +a++h +  Pd++++ k+l++G lP+s+v+ + e++ + +pG+ G ty+GnPla+  a a l+++ +e l e a+  g  ++  l  l  ++   i +vrg+G + av +++p+ +  d+++a  +  + + +Gll  +   +Gniirl +Plti++e +d++l+i e++
  MMETSP1061-20121228|6772_1  57 PVVLTKGSGTRVWDTDGKEYFDFLSAYSAVNQGHCHPKIIGALVDQAKQLTLTSRA--FYND--ALGEYCEFVTAYFGMDRVLPMNTGVEGGETAIKLARKWGYQVKGIApnkarclFaNNNFWGRTLAAVSSSNDPTAYN-EFGPYMPGFSSIPYND-----LG----SLE-------MEFQ--KDAENIAAFMVEPIQGEAGVMVPDDGYMKKVKKLCEKYNVLLIADEVQTGLCRTGHRLAVDHDGILPDILVLGKALSGGvLPVSAVLAKEEVMATLKPGEHGSTYGGNPLACRVAVAALEVLRDEKLDENARARGAQLRAGLESLVGSTSlPIEKVRGRGLLNAVIINQPKGGYGDTGKAWDLCVKMQHNGLL--AKPTHGNIIRLAPPLTITEEEIDQCLDIFEKS 443
                 677899*********************************************99865..4554..688999999999*************************986655554222222232567*****99999888888886.6*******99999853.....22....233.......2233..3699*************************************************************************9967*************************************************************9998776526***************************************75..67889***********************9876 PP

>> TIGR03372  putres_am_tran: putrescine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.1   0.0   6.1e-71   2.1e-68      67     435 ..      66     437 ..      40     444 .. 0.87

  Alignments for each domain:
  == domain 1    score: 229.1 bits;  conditional E-value: 6.1e-71
   TIGR03372  67 ntlvdtqgqeyldclggygifnvghrnpvvvaavesqlakqplhsqelldplrallaktlaaltpgklkysffsnsgtesveaalklaka..yqs...prgkytfiaasgafhgkslgalsataksafrkpfmpllpgfrhvafgdieamlkalqeckktgddvaavilepiqgeggvilppenyltavrklcdevgallildevqtgmgrtgkmfacehenvqpdilclakalgggvmpigatvateevfsvlfenpflhtttfggnplacaaalatvnvlleknlpeqaeikgellldglrqlaaeypdlvieargkgllqaiefvdneigyafakelfrrrv..lvagtln...naksvrieppltltieqcelvl 435
                   + dt+g+ey+d l  y   n gh  p+++ a+ +q  +  l s+ + +   +  +  ++a     +   +  n+g e  e+a+kla+   yq       k   + a+  f g++l a+s++  ++  + f p +pgf  +++ d+ ++     e +k  +++aa ++epiqge gv++p ++y+  v+klc+++  lli devqtg+ rtg+ +a++h+++ pdil+l kal ggv+p+ a +a eev++ l  +p  h +t+ggnplac  a+a+++vl +++l e+a  +g  l  gl+ l       + + rg+gll a+ + + + gy  + + +   v     g l      + +r+ pplt+t e+ ++ l
  MMETSP1061-20121228|6772_1  66 TRVWDTDGKEYFDFLSAYSAVNQGHCHPKIIGALVDQAKQLTLTSRAFYNDALGEYCEFVTAYFG--MDRVLPMNTGVEGGETAIKLARKwgYQVkgiAPNKARCLFANNNFWGRTLAAVSSSNDPTAYNEFGPYMPGFSSIPYNDLGSLEM---EFQKDAENIAAFMVEPIQGEAGVMVPDDGYMKKVKKLCEKYNVLLIADEVQTGLCRTGHRLAVDHDGILPDILVLGKALSGGVLPVSAVLAKEEVMATL--KPGEHGSTYGGNPLACRVAVAALEVLRDEKLDENARARGAQLRAGLESLVGSTSLPIEKVRGRGLLNAVIINQPKGGYGDTGKAWDLCVkmQHNGLLAkptHGNIIRLAPPLTITEEEIDQCL 437
                 3356*********************************9999******999888888888888764..5667889**************8533775222345788888999*************************************99986...567999*******************************************************************************************99..7999***********************************************99999****************999999766554433320022344431114568**********99877665 PP

>> TIGR00709  dat: 2,4-diaminobutyrate 4-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.3   0.0   8.7e-61     3e-58      20     435 ..      55     446 ..      48     448 .] 0.85

  Alignments for each domain:
  == domain 1    score: 195.3 bits;  conditional E-value: 8.7e-61
   TIGR00709  20 klplafakakGckvtdveGkeyldflaGaGtlalGhndealkqklkdvldsglvlhtldlttklkdafieallaillkpkeeyilqftGpsGadaveaalklakkytGrsnvis........fsgGfhGmtiGalaltGnlsaknavenllsgvqflpydheyreplglggeagadavieyienfledvesGvdkpaavileaiqGeGGvvaasveflrkirevtrkrdillildevqaGvarsGklfafehaGiepdvvvlskavGG.glplavlaikke.fdafqpaehtGtfrGnqlalatGlealeilkdenlaknaqergerltsalddlikeyp.eiknvrGrGlmlGieivderkskdaigaypadselaaaiqkacfenklllekgGregevvrllcpvtiddeeleevlsrlkqavee 435
                  lp++++k  G +v+d +Gkey dfl+   +++ Gh +++++ +l d   ++l+l +  +   + +++ e + a++    ++ +l  +  +G +  e+a+kla+k+  + + i+          + f G t  a++ + + +a n  +  ++g + +py++                 +    +f +d+e      aa+++e iqGe Gv      +++k++++++k ++lli devq+G++r+G+ +a +h Gi pd++vl ka+ G  lp++ ++ k+e   + +p+eh  t+ Gn la    ++ale+l+de+l++na+ rg +l + l+ l+      i++vrGrGl+  + i    ++k   g   +  +l   +q    +n+ll  k   +g+++rl +p+ti++ee+++ l +++++  e
  MMETSP1061-20121228|6772_1  55 PLPVVLTKGSGTRVWDTDGKEYFDFLSAYSAVNQGHCHPKIIGALVDQA-KQLTLTSRAFYNDALGEYCEFVTAYFG---MDRVL--PMNTGVEGGETAIKLARKWGYQVKGIApnkarclfANNNFWGRTLAAVSSSNDPTAYNEFGPYMPGFSSIPYNDLGSL-------------EM---EFQKDAE----NIAAFMVEPIQGEAGVMVPDDGYMKKVKKLCEKYNVLLIADEVQTGLCRTGHRLAVDHDGILPDILVLGKALSGgVLPVSAVLAKEEvMATLKPGEHGSTYGGNPLACRVAVAALEVLRDEKLDENARARGAQLRAGLESLVGSTSlPIEKVRGRGLLNAVIIN---QPKGGYGDTGKAWDLCVKMQ----HNGLLA-K-PTHGNIIRLAPPLTITEEEIDQCLDIFEKSFHE 446
                 59********************************************985.679999999*****************9...77666..56799999*********9765444333222222215679*********************************875333.............21...3555554....469********************************************************************977479996666665516789*************************************************97654259********9987765...45566665555555655544....456554.4.4689*************************9876 PP

>> TIGR02407  ectoine_ectB: diaminobutyrate--2-oxoglutarate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.9   0.0   4.8e-57   1.6e-54      17     411 ..      56     445 ..      47     446 .. 0.85

  Alignments for each domain:
  == domain 1    score: 182.9 bits;  conditional E-value: 4.8e-57
   TIGR02407  17 fptvfekakgaklldedgkeyidflagaGalnyGhnneklkealldylaedgivhsldmateakkefletfeevilkPreldykvqftgPtGtnavesalklark....vtg....renvvaftnafhGmslgslavtgnkskreeagvslsnvvrlPydgyldeevdslayleklledsssGvdlPaaviletvqgeGGlnvaskeWlrsleklcrehdillivddiqaGcGrtGtffsfeeagikPdivclsksisGiGlPlalvllkpe.ldvwkPgehnGtfrGnnlafvaataalekyWkddelekavkkksekvkerleeivekypelkkearGrGllqGlevkkedlakkvakkafekgliietsG.....aedevlkllpaltideeelekGleileqale 411
                  p+v++k++g++++d+dgkey dfl++  a+n Gh ++k+  al+d  ++    +s   +  a  e+ e ++++    r       ++  tG +  e+a+klark    v+g    +   +   n f G +l++++ + + +  +e g  +   +++Py++  + e   ++    + +d     +  aa+++e +qge G+ v  + ++++++klc+++++lli d++q+G  rtG+ ++ ++ gi Pdi++l k++sG  lP++ vl k e + + kPgeh  t+ Gn la   a aale   +d++l ++ + ++ ++++ le++v + +  ++++rGrGll+ + +++ +     + ka++  + +++ G     ++ ++++l p+lti+eee+++ l+i+e++++
  MMETSP1061-20121228|6772_1  56 LPVVLTKGSGTRVWDTDGKEYFDFLSAYSAVNQGHCHPKIIGALVDQAKQL-TLTSRAFYNDALGEYCEFVTAYFGMDRV------LPMNTGVEGGETAIKLARKwgyqVKGiapnKARCLFANNNFWGRTLAAVSSSNDPTAYNEFGPYMPGFSSIPYNDLGSLE---ME----FQKD----AENIAAFMVEPIQGEAGVMVPDDGYMKKVKKLCEKYNVLLIADEVQTGLCRTGHRLAVDHDGILPDILVLGKALSGGVLPVSAVLAKEEvMATLKPGEHGSTYGGNPLACRVAVAALE-VLRDEKLDENARARGAQLRAGLESLVGSTSLPIEKVRGRGLLNAVIINQPKGGYGDTGKAWDLCVKMQHNGllakpTHGNIIRLAPPLTITEEEIDQCLDIFEKSFH 445
                 69********************************************86654.5567789999999999988888766665......57789*************9333323222113444445689**********************99*********9876643...22....2233....35679***********************************************************************99*********9934789************************.59******************************************999986654444444444444444444222225789************************986 PP

>> TIGR00713  hemL: glutamate-1-semialdehyde-2,1-aminomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   0.0   3.3e-50   1.1e-47      29     364 ..      55     391 ..      49     447 .. 0.84

  Alignments for each domain:
  == domain 1    score: 160.4 bits;  conditional E-value: 3.3e-50
   TIGR00713  29 gtPlfvekakgallldvdgneyiDyvlsyGplilGhahekvveavkealerGlsyG..apteaeielakeiiervksvekvRlvnsGteatmsavRlaRgftgrdkii..kfeGcyhGhaDalLvkagsgaatlglpsslgvpeeaakltlvlpyndlealeevleelgeeiagvivepvagnmgvvlpkkeflealrelteengallilDevvtGF.RvalegaqelygvepDlvvlGkilggG.lPvgalggrreimerlaPeGkvyqaGtlsgnplavaaGlatlkaleeeevykeleelaeklaegleevleekgievevvrvgsmlslffteeevtn 364
                 + P++++k++g+ ++d+dg+ey D++ +y ++  Gh h+k++ a+ +++++ +       ++a  e+ + ++ ++  +++v  +n+G e   +a++laR    + k i      c   +++ +  ++ +++   + p++ +     +    ++pyndl +le  +++  e+ia+ +vep+ g +gv+ p +++++++++l+e++++lli Dev tG  R  +  a +  g+ pD++vlGk l+gG lPv+a+ +++e+m +l P        t  gnpla    +a+l+ l++e++ ++ ++  ++l++gle ++ ++++++e vr   +l+  + +++   
  MMETSP1061-20121228|6772_1  55 PLPVVLTKGSGTRVWDTDGKEYFDFLSAYSAVNQGHCHPKIIGALVDQAKQLTLTSraFYNDALGEYCEFVTAYF-GMDRVLPMNTGVEGGETAIKLARKWGYQVKGIapNKARCLF-ANNNFWGRTLAAVSSSNDPTAYNEFGPYMPGFSSIPYNDLGSLEMEFQKDAENIAAFMVEPIQGEAGVMVPDDGYMKKVKKLCEKYNVLLIADEVQTGLcRTGHRLAVDHDGILPDILVLGKALSGGvLPVSAVLAKEEVMATLKPGE---HGSTYGGNPLACRVAVAALEVLRDEKLDENARARGAQLRAGLESLVGSTSLPIEKVRGRGLLNAVIINQPKGG 391
                 67999******************************************9998765440045566667888887776.57899999***************877665544113334544.556677777778888888888888888889999*****************************************************************7699**********************99978*****************64...477999**********************************************999888888776555554444 PP

>> TIGR03251  LAT_fam: L-lysine 6-transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.4   0.0   9.2e-45   3.1e-42      22     431 ..      59     443 ..      50     445 .. 0.85

  Alignments for each domain:
  == domain 1    score: 142.4 bits;  conditional E-value: 9.2e-45
   TIGR03251  22 dleksrGsvlvdardGrryldlfsffassalGmnhPaladdaefrerlaavavnkpsnsdvytvemarfvdtfarvlvdpalPhlffieGGalavenalktafdwksrkneargieaelGtkvlhlrqafhGrsGytlsltntdPrktarfPkfdwPridaPkltfpldaeeldavkaleeealaqakaafaeeeddiaaliiePiqgeGGdnhlrpeflralrklcdehdallvldevqtGvGltGkawayqqlgvkPdvvafGkktqvcGilagrrvdevadnvfk..vssrlnstfGGnlvdmvratrileiieeerlvdrareqGehllarleelaaefpklvsnprGrGllcafdl..pstelrd.....elvkalyrekvlvlgaGekairfrpaltvseeeidealdairrv 431
                  l+k  G+++ d  dG++y+d+ s +++   G+ hP++    ++ ++  ++++   +  + +  e+ +fv ++    +d  lP    +eGG    e a+k a  w     + +gi++++  + l  ++ f Gr+  ++s +n dP+  + f          P++       +    ++   + l+  +  f++  ++iaa+++ePiqge G       ++++++klc+++++ll+ devqtG+  tG+  a ++ g+ Pd++++Gk    +G+l    v   +++v++  +++   st+GGn      a   le++ +e+l ++ar +G++l+a le l  + +  ++++rGrGll a+ +  p+  + d     +l  ++ ++++l  ++  + ir+ p+lt++eeeid++ld+ ++ 
  MMETSP1061-20121228|6772_1  59 VLTKGSGTRVWD-TDGKEYFDFLSAYSAVNQGHCHPKII--GALVDQAKQLTLTSRAFYNDALGEYCEFVTAY--FGMDRVLPMNTGVEGG----ETAIKLARKWGY---QVKGIAPNK-ARCLFANNNFWGRTLAAVSSSN-DPTAYNEFG---------PYMP------G---FSSIPYNDLGSLEMEFQKDAENIAAFMVEPIQGEAGVMVPDDGYMKKVKKLCEKYNVLLIADEVQTGLCRTGHRLAVDHDGILPDILVLGKAL-SGGVLPVSAVLA-KEEVMAtlKPGEHGSTYGGNPLACRVAVAALEVLRDEKLDENARARGAQLRAGLESLVGSTSLPIEKVRGRGLLNAVIInqPKGGYGDtgkawDLCVKMQHNGLLAKPTHGNIIRLAPPLTITEEEIDQCLDIFEKS 443
                 467888999888.59***********************5..578888999999988888888899*****976..689*************....666777877864...567888776.578999***********99888.788877774.........5554......2...22344556899999****************************************************************************865.688887766643.333443126899********9998889999********************************99***********986622443333322222799999*********************************98875 PP

>> TIGR00699  GABAtrns_euk: 4-aminobutyrate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00018     0.062      40     101 ..      56     121 ..      31     143 .. 0.73
   2 !   70.3   0.0   8.5e-23   2.9e-20     248     463 ..     220     443 ..     208     444 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00018
   TIGR00699  40 fladyekslGnylvdvdGnvlldlyaqiasipiGynnPallkvakspevatalinr....PalGnf 101
                 +++  +k  G  + d dG  ++d  +  +++  G+ +P+++ +  ++    +l  r     alG +
  MMETSP1061-20121228|6772_1  56 LPVVLTKGSGTRVWDTDGKEYFDFLSAYSAVNQGHCHPKIIGALVDQAKQLTLTSRafynDALGEY 121
                 567789999*****************************9988766555555555551111466666 PP

  == domain 2    score: 70.3 bits;  conditional E-value: 8.5e-23
   TIGR00699 248 yrkpvaaiivePiqseGGdnhasddffrklrditkkhnvvfivdevqtGvGatGklwahehwnleePadlvtfskklqta.....GyffhdealrPnkpyrqfntwlGdPsralllreiieeikdkdllenvaavGdylyagleelakkyPeklqnlrgkGrGtfiawdtpdeakrd.....klllklklkGvniGGcgvkavrlrPslvfqkhhadillealeki 463
                    ++aa +vePiq e G     d +++k++++ +k+nv+ i devqtG   tG+  a +h ++   +d++ + k l  +      +  ++e +   kp  +  t+ G+P    ++ + +e ++d++l en+ a G  l agle+l       ++++rg+G    +  + p++   d      l++k++++G+    +  + +rl P l+  ++  d  l+++ek+
  MMETSP1061-20121228|6772_1 220 DAENIAAFMVEPIQGEAGVMVPDDGYMKKVKKLCEKYNVLLIADEVQTGLCRTGHRLAVDHDGIL--PDILVLGKALSGGvlpvsAVLAKEEVMATLKPGEHGSTYGGNPLACRVAVAALEVLRDEKLDENARARGAQLRAGLESLVGSTSLPIEKVRGRGLLNAVIINQPKGGYGDtgkawDLCVKMQHNGLLAKPTHGNIIRLAPPLTITEEEIDQCLDIFEKS 443
                 34559*********************************************************995..6888887765433111113345566677789************************************************************9998888888888765444222227*********************************9999999885 PP

>> TIGR01822  2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.1e-05     0.024     187     286 ..     244     341 ..     206     368 .. 0.71
   2 ?   -3.9   0.0       3.2   1.1e+03     372     389 ..     429     446 ..     420     447 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.1e-05
   TIGR01822 187 apldeicalaekydalvlvdechatGflGatGrGsaelldvldkvdiitgtlGkalGGasGGftt..akkevvellrqrsrpylf.snslapavvgasikvle 286
                   ++++++l+eky+ l++ de   tG+  +  r + +  ++l  +      lGkal G +   ++  ak+ev++ l+       +  n la  v  a+++vl 
  MMETSP1061-20121228|6772_1 244 GYMKKVKKLCEKYNVLLIADEVQ-TGLCRTGHRLAVDHDGILPDIL----VLGKALSGGVLPVSAvlAKEEVMATLKPGEHGSTYgGNPLACRVAVAALEVLR 341
                 46899***************985.8998888888889999998765....59***9887765543338999***99987776655258888888777777763 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.2
   TIGR01822 372 eeeqldkaveafvkvGre 389
                 +ee++d++++ f k  +e
  MMETSP1061-20121228|6772_1 429 TEEEIDQCLDIFEKSFHE 446
                 7999*******9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.42
# Mc/sec: 1407.88
//
Query:       MMETSP1061-20121228|6786_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 493.52
//
Query:       MMETSP1061-20121228|6779_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    6.7   7.2       0.13   10.4   0.1    2.2  2  TIGR04065 ocin_CLI_3235: putative bacteriocin precursor, CLI_3235 family


Domain annotation for each model (and alignments):
>> TIGR04065  ocin_CLI_3235: putative bacteriocin precursor, CLI_3235 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   3.1e-05      0.13       9      31 ..     428     448 ..     426     450 .. 0.87
   2 ?   -2.1   1.7      0.25     1e+03      21      29 ..     487     496 ..     480     498 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 3.1e-05
   TIGR04065   9 elkkeTveAYsCnCssnCsCycr 31 
                 ++ + T+eAY  +C s C+ ++r
  MMETSP1061-20121228|6779_1 428 HSMQSTIEAY-NQC-SLCEPVSR 448
                 7889******.***.***97776 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.25
   TIGR04065  21 nCssnC.sCy 29 
                  C+s+C s +
  MMETSP1061-20121228|6779_1 487 ACASACtSVV 496
                 5888885444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 2853.70
//
Query:       MMETSP1061-20121228|6780_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 751.32
//
Query:       MMETSP1061-20121228|6783_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.9e-119  394.7   2.2   1.1e-118  394.4   1.5    1.0  1  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
    6.3e-80  267.0   4.0    7.6e-80  266.7   2.8    1.0  1  TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase
    1.7e-58  196.3   6.6    7.4e-58  194.2   4.6    1.7  1  TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA
    1.6e-48  163.7   6.5    1.1e-41  141.2   1.4    3.0  2  TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI
    2.5e-08   30.8   2.5    0.00048   16.7   0.0    2.3  2  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II


Domain annotation for each model (and alignments):
>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  394.4   1.5  1.3e-121  1.1e-118      11     385 .]      13     386 ..       6     386 .. 0.97

  Alignments for each domain:
  == domain 1    score: 394.4 bits;  conditional E-value: 1.3e-121
   TIGR01930  11 klggslkelsaedLlaavikelleragldpekidevilGnvlqageqaniaReaalaaglpesvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpillkaslrreslklgkakledqllkdl...vktklsmgetAenlakkygisReeqDeyalrShqkaakAieegkfkdeivpvevkgk...kkvvskDegirpnttlekLakLkpafkekkgstvtAgNssqlnDGAaalllmseevakelgltplarivsaavagvdpeemglgpvpAiekaLkkaglsisdidlvEinEAFAaqvlavekelgsldlekvNvnGGAiAlGHPlGasGarivltllkeLkergkkyGlatlCvggGqGaAvile 385
                 +++gs++ l+ ++L++ +ik++l++   d  +i e i+Gnv++ag ++++aR+a+l+aglpes+  +t+n+vCaSg+++v++a q++++G++ +++aGG EsmS++p++lkas  r + klg+++l d +++d+    +++ +mg++ e++ak+ygisR++qD+ya++S+++a++A +eg f + i  ve++++   ++vv +De++   ++++k+a+Lkpaf++ +g t+tA+N+s+lnDGA+a++lm+e+ a + g++pla+i++++ a+  p ++++ p  A++ aL+ ag+++sd+d+ EinEAF++++la+++ l+ ld+ +vNv GGA++lGHP+G+sGariv tl ++Lk++++ +G+a++C+ggG ++A+++e
  MMETSP1061-20121228|6783_1  13 RFQGSFSGLKGSELASSAIKGALAKL-PDDVHISECIMGNVVSAGMGQAPARQAVLYAGLPESTICTTINKVCASGMKSVMMASQALQCGQNGAMLAGGFESMSNIPHYLKAS--RTGTKLGNTTLIDGVVHDGlwdIYNDQHMGMCGEQCAKEYGISRDDQDAYAIESYRRAQAALAEGVFGEVI-SVEIPQRrgdPVVVIEDEEPG-SVEIDKIASLKPAFDRTSG-TITAANASSLNDGACAMVLMTETEALDRGIKPLAKIRGFGDAAQAPVDFTTTPSLAVPVALRNAGVEASDVDFHEINEAFSVVALANMQLLN-LDPTRVNVFGGAVSLGHPIGMSGARIVGTLYNALKHKDGSIGCASICNGGGGASAIVIE 386
                 789**********************7.6778********************************************************************************98..89********************99*******************************************8655.599999999888888888876.9******************.6*******************************************************************************************.89*******************************************************97 PP

>> TIGR02430  pcaF: 3-oxoadipyl-CoA thiolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.7   2.8   9.3e-83   7.6e-80      14     400 .]      12     388 ..       8     388 .. 0.96

  Alignments for each domain:
  == domain 1    score: 266.7 bits;  conditional E-value: 9.3e-83
   TIGR02430  14 GrygGslssvraddlaavplkallarnpsldaaaiddvilGcanqaGednrnvarmaallaGlpvsvpgttvnrlcgsgldalglaaraikaGeadlviaGGvesmsrapfvlGkadsafsrsakledttiGwrfvnpklkalyGvdsmpetaenvaeefgvsredqdafalrsqqrtaaaqakGffaeeivpveikqkkGeetvvdkdehlraettlealaklkavv.redgtvtaGnasGvndGaaalllaseeavkrhgltprarilaaasaGveprvmGlgpvpavkkllaraglsledldvielneafaaqalavlrelgladddarvnpnGGaialGhplGasGarlvltalkqleksggryalatlciGvGqGialvierv 400
                  r+ Gs+s +++ +la+  +k  la+ p  d   i + i+G    aG   +  ar a+l aGlp+s  +tt+n++c+sg++++ +a +a+++G++  ++aGG esms  p+ l  +       +kl +tt+    v   l ++y  + m+   e+ a+e+g+sr+dqda+a+ s +r++aa a+G+f  e+++vei+q++G+++vv +de++  +  ++++a lk+ + r++gt+ta nas +ndGa+a++l +e  +  +g++p a+i ++  a  +p  +  +p  av  +l++ag++ +d+d  e+neaf+  ala ++ l l  d +rvn  GGa++lGhp+G+sGar+v t+ + l++++g  + a++c G G   a+vier+
  MMETSP1061-20121228|6783_1  12 YRFQGSFSGLKGSELASSAIKGALAKLP--DDVHISECIMGNVVSAGMG-QAPARQAVLYAGLPESTICTTINKVCASGMKSVMMASQALQCGQNGAMLAGGFESMSNIPHYLKASR----TGTKLGNTTLIDGVVHDGLWDIYNDQHMGMCGEQCAKEYGISRDDQDAYAIESYRRAQAALAEGVFG-EVISVEIPQRRGDPVVVIEDEEPG-SVEIDKIASLKPAFdRTSGTITAANASSLNDGACAMVLMTETEALDRGIKPLAKIRGFGDAAQAPVDFTTTPSLAVPVALRNAGVEASDVDFHEINEAFSVVALANMQLLNL--DPTRVNVFGGAVSLGHPIGMSGARIVGTLYNALKHKDGSIGCASICNGGGGASAIVIERL 388
                 69***********************998..57789************86.578**********************************************************995443....3579**************************************************************7.899********************9.899********9984679****************************************************************************************998887..899*******************************************************96 PP

>> TIGR02445  fadA: acetyl-CoA C-acyltransferase FadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.2   4.6     9e-61   7.4e-58      24     384 ..      22     387 ..      13     388 .. 0.84

  Alignments for each domain:
  == domain 1    score: 194.2 bits;  conditional E-value: 9e-61
   TIGR02445  24 raedlsahllkkllarnpkveaaevediywgcvqqtleqgfniarnaallaevphevaavtvnrlcgssmqalhdaaraimtgdaevcliggvehmghvsms.....hgvdf.hpglskhvak.......aagmmgltaemlgklhgisreqqdafaarsharahaatlegkfkneiiptegydadgvlkvldydevirpettvealaalrpafdpkngtvtagtssalsdgasamlvmseeraqelgvkprarirsmavagvdpsimgygpvpatkkalkraglsisdidvlelneafaaqalpvlkdlglldkldekvnlnggaialghplgcsgaristtllnlmerkdakfglatmciglgqgiatvfer 384
                 +  +l++  +k+ la+ p  +  ++ + + g v      g   ar+a l a++p ++ + t+n++c s m+++  a++a+  g+  ++l gg e m  ++        g    +  l   v +           mg+  e  +k +gisr+ qda+a+ s+ ra aa  eg f  e+i +e  +  g   v+  de       ++ +a+l+pafd ++gt+ta  +s+l dga+am++m+e  a + g+kp+a+ir++  a   p  +   p  a   al++ag+ +sd+d+ e+neaf+  al    +++ll+    +vn+ gga++lghp+g sgari +tl n +++kd+  g a++c g g   a v+er
  MMETSP1061-20121228|6783_1  22 KGSELASSAIKGALAKLP--DDVHISECIMGNVVS-AGMGQAPARQAVLYAGLPESTICTTINKVCASGMKSVMMASQALQCGQNGAMLAGGFESMSNIPHYlkasrTGTKLgNTTLIDGVVHdglwdiyNDQHMGMCGEQCAKEYGISRDDQDAYAIESYRRAQAALAEGVFG-EVISVEIPQRRGDPVVVIEDEE-PGSVEIDKIASLKPAFDRTSGTITAANASSLNDGACAMVLMTETEALDRGIKPLAKIRGFGDAAQAPVDFTTTPSLAVPVALRNAGVEASDVDFHEINEAFSVVALA---NMQLLNLDPTRVNVFGGAVSLGHPIGMSGARIVGTLYNALKHKDGSIGCASICNGGGGASAIVIER 387
                 555666666666666655..455666666676654.3457788******************************************************9986411111333331222322232211111114567**************************************96.7888998888888777777774.346789***********************************************************************************************988876...5677777789******************************************************99 PP

>> TIGR02446  FadI: acetyl-CoA C-acyltransferase FadI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1   1.9e-07   0.00015      26     127 ..      18     118 ..       9     133 .. 0.83
   2 !  141.2   1.4   1.3e-44   1.1e-41     177     428 ..     152     386 ..     144     388 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 1.9e-07
   TIGR02446  26 fhgipavdlgkmvvsellarseidaklieqlvfgqvvqmpeapniareivlgtgmnvhtdaysvtracatsfqsavnvaesimagaieigiaggadsssvlp 127
                 f+g+   +l    ++  la+   d + i + ++g+vv        ar+ vl +g+  +t + ++ + ca+ ++s++  ++++ +g+  + +agg +s s +p
  MMETSP1061-20121228|6783_1  18 FSGLKGSELASSAIKGALAKLPDDVH-ISECIMGNVVSAGMGQAPARQAVLYAGLPESTICTTINKVCASGMKSVMMASQALQCGQNGAMLAGGFESMSNIP 118
                 56666666666666666666544444.667889****977777779****************************************************9998 PP

  == domain 2    score: 141.2 bits;  conditional E-value: 1.3e-44
   TIGR02446 177 smgqtaeqmaktygitraeqdalahrshtlaaqawadgklkeevmtafvepyk.k.fiaednnirenssladyaklrpafdrkygsvtaanstpltdgaaavilmsegrakelgleilgyirsyaftaidveqdmllgpsyatplalkraglelsdltlidmheafaaqtlanvkllasekfaeeklgrakaigeidmskfnvlggsiayghpfaatgarlitqtlrelkrrggglglatacaagglgaamile 428
                 +mg   eq ak ygi+r++qda a  s+++a+ a a+g + +ev+   ++  + + +++ +++  +  ++++ a l+pafdr  g++taan++ l dga+a++lm+e+ a + g+++l  ir++  +a +   d+   ps a p+al++ag+e sd+ + ++ eaf+  +lan++ll                 ++d  + nv+gg+++ ghp+  +gar++    + lk + g +g a+ c  gg  +a+++e
  MMETSP1061-20121228|6783_1 152 HMGMCGEQCAKEYGISRDDQDAYAIESYRRAQAALAEGVF-GEVISVEIPQRRgDpVVVIEDEEPGSVEIDKIASLKPAFDRTSGTITAANASSLNDGACAMVLMTETEALDRGIKPLAKIRGFGDAA-QAPVDFTTTPSLAVPVALRNAGVEASDVDFHEINEAFSVVALANMQLL-----------------NLDPTRVNVFGGAVSLGHPIGMSGARIVGTLYNALKHKDGSIGCASICNGGGGASAIVIE 386
                 79************************************76.5666666655442423445556678899*******************************************************9655.7789******************************************98.................478999*********************************************999999998 PP

>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.5   5.3e-06    0.0043     153     191 ..      76     114 ..      52     118 .. 0.88
   2 !   16.7   0.0   5.9e-07   0.00048     229     297 ..     245     308 ..     241     364 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.3e-06
   TIGR03150 153 pnlavvtACatgthaigeaarlikegeadvmiagGaeaa 191
                 +++++   Ca+g++++  a ++++ g+  +m+agG e++
  MMETSP1061-20121228|6783_1  76 ICTTINKVCASGMKSVMMASQALQCGQNGAMLAGGFESM 114
                 56777889***************************9986 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 5.9e-07
   TIGR03150 229 lgeGagvlvlEelehAkaRgAkiyaevvGyglsaDAyHitapaeegegaaramkaalkdaglkpeevdy 297
                 l +Ga  +vl +  +A  Rg k +a++ G+g +a A     p +  +  + a+  al++ag+++++vd+
  MMETSP1061-20121228|6783_1 245 LNDGACAMVLMTETEALDRGIKPLAKIRGFGDAAQA-----PVDFTTTPSLAVPVALRNAGVEASDVDF 308
                 679****************************87765.....7777778899****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 1711.46
//
Query:       MMETSP1061-20121228|6788_1  [L=800]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   14.7   0.7     0.0082   13.8   0.5    1.4  1  TIGR03527 selenium_YedF: selenium metabolism protein YedF


Domain annotation for each model (and alignments):
>> TIGR03527  selenium_YedF: selenium metabolism protein YedF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.5     2e-06    0.0082       4      85 ..     273     353 ..     271     374 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2e-06
   TIGR03527   4 rglaCPqPviktkkaleelgeegelevlvdneaakeNvkkfakslgleveveekeeelltlilkkkeeakeaeeeeeakekk 85 
                  +l+ PqP+i+ ++ l+e+ ++++l++++  ++a+eN + + ++ + e ++++ e+e  + +++++++ ++++ ++  + ++
  MMETSP1061-20121228|6788_1 273 TKLSRPQPIIQNQRSLSEA-TTDTLRTTMSVAIAEENFTGIQSDYQNERNLQQGEGEGESQQQQQQQQQQQQQVQSVCMGNN 353
                 67888**************.666****************9999999999998888777777666666666665554433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 3199.74
//
Query:       MMETSP1061-20121228|6791_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 550.91
//
Query:       MMETSP1061-20121228|6789_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 984.42
//
Query:       MMETSP1061-20121228|6792_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 2844.15
//
Query:       MMETSP1061-20121228|6793_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2496.32
//
Query:       MMETSP1061-20121228|6798_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 768.98
//
Query:       MMETSP1061-20121228|6801_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|6809_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|6799_1  [L=1078]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1078 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 4184.83
//
Query:       MMETSP1061-20121228|6805_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2969.75
//
Query:       MMETSP1061-20121228|6813_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 869.93
//
Query:       MMETSP1061-20121228|6812_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2573.79
//
Query:       MMETSP1061-20121228|6814_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       423  (0.10312); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.88u 0.14s 00:00:01.02 Elapsed: 00:00:00.60
# Mc/sec: 1205.50
//
Query:       MMETSP1061-20121228|6811_1  [L=1481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.73u 0.12s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 3832.86
//
Query:       MMETSP1061-20121228|6816_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 1457.88
//
Query:       MMETSP1061-20121228|6817_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 496.53
//
Query:       MMETSP1061-20121228|6810_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-58  196.3   0.0    2.1e-40  136.4   0.0    2.0  2  TIGR01179 galE: UDP-glucose 4-epimerase
    6.3e-56  187.6   0.0    7.8e-56  187.3   0.0    1.1  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    1.5e-42  143.7   0.0    2.9e-42  142.8   0.0    1.4  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    1.1e-40  137.4   0.0    1.3e-40  137.1   0.0    1.1  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    2.9e-28   96.8   0.0    1.1e-20   71.8   0.0    2.1  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    2.3e-19   67.6   0.3      3e-18   64.0   0.0    2.4  2  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    1.9e-17   60.9   0.1    1.2e-14   51.7   0.0    2.9  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    1.4e-14   51.7   0.0    2.9e-14   50.6   0.0    1.5  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    6.9e-11   40.1   0.0    1.1e-05   22.9   0.0    2.3  2  TIGR01777 yfcH: TIGR01777 family protein
    9.8e-10   35.7   0.0    3.1e-09   34.0   0.0    1.7  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
    1.8e-07   28.6   0.0    5.4e-07   27.0   0.0    1.7  1  TIGR01746 Thioester-redct: thioester reductase domain
    0.00095   15.5   0.0     0.0013   15.0   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
     0.0047   14.0   0.0     0.0077   13.3   0.0    1.3  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
     0.0074   13.6   0.0      0.012   12.8   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
  ------ inclusion threshold ------
      0.017   12.7   0.0       0.03   11.9   0.0    1.4  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
      0.021   12.1   0.0      0.043   11.1   0.0    1.5  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4   0.0   8.3e-43   2.1e-40       1     179 [.      76     263 ..      76     271 .. 0.91
   2 !   58.0   0.0   5.9e-19   1.5e-16     221     330 ..     289     394 ..     281     396 .. 0.93

  Alignments for each domain:
  == domain 1    score: 136.4 bits;  conditional E-value: 8.3e-43
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskg.....skealkalekit....evklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYgesekvpisEespln.pinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGA 179
                 k+LvtGgaG+iGs v+  ll++g +vv++D++ +      +++ l+ l++ +    +vk+++gd+ d+  +e+++e+e+++ v H+aa++ v  s+++P  Y ++n+++t++L+e+ +k+gv++++F+ss++vYg s+++ +sEe+++  p++pY +sk + E +   +++  ++l++  LR+F v G 
  MMETSP1061-20121228|6810_1  76 KVLVTGGAGFIGSNVAEFLLARGDDVVIVDEINDYydvsiKESNLRLLQESYpeegRVKIYRGDICDEDLMEQIFETEQPKWVCHMAARAGVRPSIQDPFVYIHSNIKGTTQLMELSHKYGVENFVFASSSSVYGGSKSTFFSEEENVDnPVSPYAASKKACELLAYTYHHL-YKLNISGLRFFTVYGP 263
                 79*****************************98651111144455556665578889**********************************************************************************99999998877*******************999.*************995 PP

  == domain 2    score: 58.0 bits;  conditional E-value: 5.9e-19
   TIGR01179 221 DGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWekklke 330
                 DG + RDy +++D+ ++ ++a++  +   ++ev+nlG+g+g s+ke ie v+k +gk+  +++ +  +GD++  +ad +k+ + lg+k++    ee i+ + +W k+  +
  MMETSP1061-20121228|6810_1 289 DGSSSRDYTYISDIVDGVVRAIDRRH---KYEVFNLGKGEGTSLKEFIELVQKHVGKKAIIKVLPDQPGDVPYTCADVAKAYEYLGYKSTIP-FEEGIRRTAEWYKTAYQ 394
                 9*******************998765...7************************************************************99.99999999999987655 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.3   0.0     3e-58   7.8e-56       1     314 [.      76     392 ..      76     398 .. 0.90

  Alignments for each domain:
  == domain 1    score: 187.3 bits;  conditional E-value: 3e-58
   TIGR01181   1 klLvtGGaGfiGsnfvryileetpdaevvvlDkLt.y...agnkenlkdled....eerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevr.llhistDevyGdlekddaeftettplaPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpekliPllitnalagkklpvyGdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWylen 314
                 k+LvtGGaGfiGsn+ +++l++ +d+  v +D+++ y   + +++nl+ l++    e r+++ +gdi+d++l+e+++++e+++ v ++aa + v  si++p ++i++n+ Gt +l+e  +k+  +v+ ++  s   vyG  +++   ++e++  +P sPy+ask a +ll  +y++ y+l+++  r    yGp   p+    ++i ++ +g +++ +GdG+  rD+ y++D + ++   +++ ++ ev+n+g +e ++ +e ++++ ++++ ++  i+   d+pG+    + d+ k ++ Lg+k ++ feeg+r+t +Wy++ 
  MMETSP1061-20121228|6810_1  76 KVLVTGGAGFIGSNVAEFLLARGDDV--VIVDEINdYydvSIKESNLRLLQEsypeEGRVKIYRGDICDEDLMEQIFETEQPKWVCHMAARAGVRPSIQDPFVYIHSNIKGTTQLMELSHKY--GVEnFVFASSSSVYGGSKST-FFSEEENVDNPVSPYAASKKACELLAYTYHHLYKLNISGLRFFTVYGPRGRPDMAPFKFIDRVSRGVEMQQFGDGSSSRDYTYISDIVDGVVRAIDRRHKYEVFNLGKGEGTSLKEFIELVQKHVG-KKAIIKVLPDQPGDVPYTCADVAKAYEYLGYKSTIPFEEGIRRTAEWYKTA 392
                 68******************988555..44555432322266788999888622225799***********************************************************995..4444999*********9999.5467777789******************************************999899********************************************************************.5789*********65555689***************************865 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.8   0.0   1.1e-44   2.9e-42       1     314 [.      77     390 ..      77     392 .. 0.85

  Alignments for each domain:
  == domain 1    score: 142.8 bits;  conditional E-value: 1.1e-44
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrk..............gekl.lnlkdeeiadyidkeellerlekeelkkveavfHegAisdTt..eldgellmenNyeyskellelcaekev.kliYASSAavYGdseeef.reekelerPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsfndlaaavvkalgkdekieyi.dmPealrgkyqkfTqadleklreagykkeflsleegvkdYvkell 314
                 ++vTGgaGfiGsn++  l  +g +d+++vD++++              +e +  + + + + ++i +e+l+e++ +  +++ ++v H++A +      +d  + +++N++ +++l+el+ + +v ++++ASS +vYG s+++f +ee+++ +P   Y+ SK+  + l+   + ++  + ++ Glr+F VyGpr     +ma   fk+++++ ++ +++      q+ dG  +RD++y++D+v+ ++ ++++++k  +fn+G g+  s ++ ++ v+k++gk+  i+ + d P ++      +T+ad++k+ e + +k+++  eeg+++  ++++
  MMETSP1061-20121228|6810_1  77 VLVTGGAGFIGSNVAEFLLARG-DDVVIVDEINDyydvsikesnlrllQESYpEEGRVKIYRGDICDEDLMEQIFE--TEQPKWVCHMAARAGVRpsIQDPFVYIHSNIKGTTQLMELSHKYGVeNFVFASSSSVYGGSKSTFfSEEENVDNPVSPYAASKKACELLAY--TYHHLYKLNISGLRFFTVYGPRGR--PDMA--PFKFIDRVSRGVEMQ------QFGDGSSSRDYTYISDIVDGVVRAIDRRHKYEVFNLGKGEGTSLKEFIELVQKHVGKKAIIKVLpDQPGDV-----PYTCADVAKAYEYLGYKSTIPFEEGIRRTAEWYK 390
                 69*************9999999.9**********9*9999876666663333033334456789999999999998..589*********987651156666779****************998459*********988877527777888**************9998..446777779************853..4565..589999999987765......66678888************************************************999888763467664.....8***************************999997 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0   5.1e-43   1.3e-40       1     263 [.      77     347 ..      77     376 .. 0.85

  Alignments for each domain:
  == domain 1    score: 137.1 bits;  conditional E-value: 5.1e-43
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsf....nswGwldevekev..kkeievvlGdirdaesvkkavk..gvdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGtaqyvPidekhpl.qaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsaraviPtiitqilsgkkkiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkliaeilgkeveiv 263
                 vlvtG  GfiGs ++e l+++G +v  + + n +     +   l  +++++  + +++++ Gdi d++ ++++ +  + + v h+aa  ++  s + p  y+++n+kGt+++++ +++++ve +v +s+s vyG ++    +e+  + ++ sPy+ask +++ la+++++ ++l ++ +r f  yGPr          i ++  g +  ++G+ s +rd++y++d+v+g+++  +  +   ev+n+g +   s+++ ++l+++ +gk+  i+
  MMETSP1061-20121228|6810_1  77 VLVTGGAGFIGSNVAEFLLARGDDVVIVDEINDYydvsIKESNLRLLQESYpeEGRVKIYRGDICDEDLMEQIFEteQPKWVCHMAARAGVRPSIQDPFVYIHSNIKGTTQLMELSHKYGVENFVFASSSSVYGGSKSTFFSEEENVdNPVSPYAASKKACELLAYTYHHLYKLNISGLRFFTVYGPRGRPDMAPFKFIDRVSRGVEMQQFGDGSSSRDYTYISDIVDGVVRAIDRRHK-YEVFNLGKGEGTSLKEFIELVQKHVGKKAIIK 347
                 89*********************998776554431001333445545544411568****************976114579********************************************************99988776652789*************************************9888777789*********************************98877665.69************************997665 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.0   4.5e-23   1.1e-20       5     172 ..      75     248 ..      72     257 .. 0.81
   2 !   22.8   0.0   3.5e-08   9.1e-06     253     338 ..     317     397 ..     306     406 .. 0.76

  Alignments for each domain:
  == domain 1    score: 71.8 bits;  conditional E-value: 4.5e-23
   TIGR02622   5 kkvlvtGhtGfkGsWlslwLkelGaevaGys.....ldpetkpnlfellkla..kklkdssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenkewvwgyretdalGGhDpYsaskaaaelvvasyrksf 172
                 kkvlvtG  Gf Gs ++ +L   G +v+         d++ k+++  ll+ +  ++ + + ++gdi d++ +e+++e+ +P+ v h+aa + vr s +dP+  ++ n+ Gt +l+e  ++   v+  v   s  vY  +++++   e+++     pY+ask a+el++ +y++ +
  MMETSP1061-20121228|6810_1  75 KKVLVTGGAGFIGSNVAEFLLARGDDVVIVDeindyYDVSIKESNLRLLQESypEEGRVKIYRGDICDEDLMEQIFETEQPKWVCHMAARAGVRPSIQDPFVYIHSNIKGTTQLMELSHKYG-VENFVFASSSSVYGGSKSTFFSEEENVDNPVSPYAASKKACELLAYTYHHLY 248
                 8***********************99864321111122233333333332221122333679******************************************************988877.899999********99998888888888899*****************9876 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 3.5e-08
   TIGR02622 253 eafnfGPeaeenkkvvelvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWykeaylkge 338
                 e fn+G  +   ++ +e+++  +++ +gkka i+     ++p +  +   d++ka ++lg+k+++ +ee +++t+eWyk+ay+k+e
  MMETSP1061-20121228|6810_1 317 EVFNLGKGE--GTSLKEFIEL-VQKHVGKKAIIKVLP--DQPGDVPYTCADVAKAYEYLGYKSTIPFEEGIRRTAEWYKTAYQKQE 397
                 467887655..4455555554.445556666666544..5899999*********************************9888876 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.1      0.16        41     120     155 ..      38      74 ..      31      76 .. 0.84
   2 !   64.0   0.0   1.2e-20     3e-18       1     271 [.      75     343 ..      75     387 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.16
   TIGR01472 120 lakkirfyqastselyGevkeipq.kektpfnprspy 155
                 +  +++++++++s ++ ev++  q +++tp +p   y
  MMETSP1061-20121228|6810_1  38 NSSSTNMHRSGSSVMFSEVENSSQvSQHTPVQPHVGY 74 
                 5667889999**********99994578*****9877 PP

  == domain 2    score: 64.0 bits;  conditional E-value: 1.2e-20
   TIGR01472   1 kvalitGitGqdGsylaelllekgyevhGlirrss....sfnterlehlyeekhkeekalflhyGdltdsssllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqke.ktpfnprspyaaaklyayyivvnyreayglfavnGilfnhesprrGetfvtrkitravakialgleeklylGnldakrdwGyakdyveamwlml.qqdkpddyviatgettsvrefvevsfelvgit 271
                 k+ l+tG +G  Gs +ae+ll +g +v  +         s+  + l  l +e   ee +++++ Gd++d   + ++ e+ +p+ +  +aa++ v+ s + p   ++++  Gt +l+e  ++ + ++   f  as+s +yG +k++  +e +   np spyaa+k +   ++  y   y l  +   +f    pr   ++   k      +++ g e +  +G+  ++rd+ y  d v+ +   + +++k + + +  ge ts++ef+e+  ++vg++
  MMETSP1061-20121228|6810_1  75 KKVLVTGGAGFIGSNVAEFLLARGDDVVIVDEINDyydvSIKESNL-RLLQESYPEEGRVKIYRGDICDEDLMEQIFETEQPKWVCHMAARAGVRPSIQDPFVYIHSNIKGTTQLMELSHKYGVEN---FVFASSSSVYGGSKSTFFSEeENVDNPVSPYAASKKACELLAYTYHHLYKLNISGLRFFTVYGPRGRPDMAPFKFID---RVSRGVE-MQQFGDGSSSRDYTYISDIVDGVVRAIdRRHKYEVFNLGKGEGTSLKEFIELVQKHVGKK 343
                 5789********************9887665554400014444444.467888888899******************************************99999999********999999886...889*********99987665155679*************************87766666666665555666666544...4455543.4467999**************98776615678899********************99975 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   4.8e-17   1.2e-14       2     250 ..      76     344 ..      75     354 .. 0.71
   2 !    5.6   0.0    0.0053       1.4     295     323 ..     362     391 ..     357     394 .. 0.88

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 4.8e-17
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvr......ktsdrrnleeld........vEiveGdlkdeaslkkalkG..cealfHvAAdy..rlwakdpeelykanvegtravleaAleagvervvytssvatlgvkedgkeadettpsklekmiGhYkrskflAEqaveelaae.glpvvivnPstPiGprDikptPtgriivdalkr.kmPayvdt..gLnlvdvddvaegHllAlerGriGerYiLG.genltlkqlleklaeitglka 250
                 kvlvtG++GF+Gs+v++ ll++G +v ++         + +++nl+ l+        v i +Gd+ de+ +++  +    + + H+AA    r   +dp   +++n++gt++++e  ++ gve  v++ss ++ g +++   ++e+   ++++ + +Y  sk   E  + +  +  +l++  +   t  Gpr +    + + i ++ ++ +m  + d     +   + d+++g ++A++r +  e + LG ge  +lk+ +e +++ +g+ka
  MMETSP1061-20121228|6810_1  76 KVLVTGGAGFIGSNVAEFLLARGDDVVIVDEindyydVSIKESNLRLLQesypeegrVKIYRGDICDEDLMEQIFETeqPKWVCHMAARAgvRPSIQDPFVYIHSNIKGTTQLMELSHKYGVENFVFASSSSVYGGSKSTFFSEEE---NVDNPVSPYAASKKACELLAYTYHHLyKLNISGLRFFTVYGPRGRPDMAPFKFIDRVSRGvEMQQFGDGssSRDYTYISDIVDGVVRAIDRRHKYEVFNLGkGEGTSLKEFIELVQKHVGKKA 344
                 89***********************988754221211234566776664333333337899********9999776511679*****986115568999999*********************************88887777665...578899999999999998887777666777766666666666666655556666555554356666654113456666666666666666666666666664455666666666666666665 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0053
   TIGR03466 295 ssakAereLgyrqr.paeealkdaveWfra 323
                 + akA + Lgy+++ p+ee++++  eW++ 
  MMETSP1061-20121228|6810_1 362 DVAKAYEYLGYKSTiPFEEGIRRTAEWYKT 391
                 789********9866************986 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   1.2e-16   2.9e-14       1     231 [.      76     345 ..      76     357 .. 0.90

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 1.2e-16
   TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs.............................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvgal.lvhiSTDYvFDGekkrpYreedet.nPlnvYgqsKlaGEvavraase....kalivRtswlygasggrnFvk.tmlrlakereelkvvadQigsP..Tyakdlaevlaaller.eargvyHlanegqvSwyefaqaifevleeegl 231
                 ++l+tG++g +g++ +e l   g +vv +++                              + d+ d + +e++++ ++P+ v + aA   V  + +++ +  + N ++t++l ++++++g+  +v+ S   v+ G+k++ ++ee+++ nP++ Y++sK a E+++  + +    +   +R   +yg +g  + +    +++++++ e++ + d   s   Ty +d+ + ++++++r +++ v+ l     +S  ef + +++ ++++++
  MMETSP1061-20121228|6810_1  76 KVLVTGGAGFIGSNVAEFLLARGDDVVIVDEIndyydvsikesnlrllqesypeegrvkiyRGDICDEDLMEQIFETEQPKWVCHMAARAGVRPSIQDPFVYIHSNIKGTTQLMELSHKYGVEnFVFASSSSVYGGSKSTFFSEEENVdNPVSPYAASKKACELLAYTYHHlyklNISGLRFFTVYGPRGRPDMAPfKFIDRVSRGVEMQQFGDGSSSRdyTYISDIVDGVVRAIDRrHKYEVFNLGKGEGTSLKEFIELVQKHVGKKAI 345
                 79*****************999999888888779***************************************************************************************963799***************98776549**************9998887663455559*********997776526899999**********999854488899999999999887999*****99989*************999884 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-05    0.0032       1      29 [.      77     105 ..      77     135 .. 0.89
   2 !   22.9   0.0   4.5e-08   1.1e-05      83     249 ..     178     348 ..     152     353 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.2e-05
   TIGR01777   1 vlitGgtGliGralveelekkghevvilt 29 
                 vl+tGg G+iG++++e l ++g++vvi+ 
  MMETSP1061-20121228|6810_1  77 VLVTGGAGFIGSNVAEFLLARGDDVVIVD 105
                 79***********************9975 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 4.5e-08
   TIGR01777  83 leSRikttealvelikkakqkpkvlisasavgyYgeseekelteee..eeagddFlaklceeWEeaaqaaekl.gvrvvllRtgivLgekGG.alakllll...fklglggklGsGrqwlsWihleDlvklilfaleneevsGvvNataPepvrnkefakalakalhrpallpv 249
                 ++S ik t++l+el +k+   ++ ++ as+ ++Yg s+++ + eee  +++ + + a   ++ E  a + ++l +  +  lR+  v g++G   +a ++ +    +   + ++G+G++   +  ++D+v+ +  a+++++   v+N+   e ++ kef++ + k +++ a+++v
  MMETSP1061-20121228|6810_1 178 IHSNIKGTTQLMELSHKYG--VENFVFASSSSVYGGSKSTFFSEEEnvDNPVSPYAA-SKKACELLAYTYHHLyKLNISGLRFFTVYGPRGRpDMAPFKFIdrvSRGVEMQQFGDGSSSRDYTYISDIVDGVVRAIDRRHKYEVFNLGKGEGTSLKEFIELVQKHVGKKAIIKV 348
                 5799**********99998..677999999999*********999854444555544.3466677777666641468899***********4223333333110333456899*******************************************************999985 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   1.2e-11   3.1e-09       5     224 ..      75     319 ..      71     346 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.2e-11
   TIGR03589   5 ksilitGgtGsfGkkfikkllekyk....vkkiiiy...srdelkqfelqqkfee.dklrffiGdvrdkerlerale..dvdlvvhaaalkqvpaaeynPleciktnieGaenvidaaldkgvkkvvalst...............dkaanPvnlyGatklasdklfvaannisGekktrfsvvryGnvvGsrG..svvPf.fkslieeGvkelpitdermtrfwitleeGvelvlkaleemkGGeif 224
                 k +l+tGg+G  G +  + ll + +    v++i  y   s  e     lq++++e  +++ + Gd+ d++ +e+ +e  +   v h aa   v  +  +P+  i++ni+G++ +++ + + gv++ v  s+               +   nPv  y a+k a++ l   a ++    k++ s  r+  v G rG   + Pf f  +++ Gv+     d   +r +  + + v+ v++a+++ +  e+f
  MMETSP1061-20121228|6810_1  75 KKVLVTGGAGFIGSNVAEFLLARGDdvviVDEINDYydvSIKESNLRLLQESYPEeGRVKIYRGDICDEDLMEQIFEteQPKWVCHMAARAGVRPSIQDPFVYIHSNIKGTTQLMELSHKYGVENFVFASSssvyggskstffseeENVDNPVSPYAASKKACELL---AYTYHHLYKLNISGLRFFTVYGPRGrpDMAPFkFIDRVSRGVEMQQFGDGSSSRDYTYISDIVDGVVRAIDRRHKYEVF 319
                 78*******************997512223444445122344444455677886658*****************986225679*****************************************988554312222211112222223458999999999999866...6677778889999999999999998445899888899999998888899999999999999999999999888888887 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   2.1e-09   5.4e-07       1     279 [.      76     338 ..      76     346 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 2.1e-09
   TIGR01746   1 tvlLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLrealrsyrleeeklaa.erievvaGdlseprlGLseaewerLaeevdtivhngAlVnf...vqpYeeLraaNVegtvevlrlaasgkakpliyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdr.glpvtivRpGrilgdsetGainssdi.llrlvkaclelglvPdleelteellpvdfvaraivalasqlaaeaggavfhvvnpkealsldefleilke 279
                 +vl+TG  Gf+G   +e Ll+r  +   + +V + ++    + +     + rl +e++ +  r+++++Gd+  ++l    +e    +e+   + h++A+  +   +q+       N++gt ++++l+ ++    +++ S+ sv+    +s+    +++ + ++   +++Ya+SK + Ell        +l+++ +R   + g    G+  +  + ++ +v+  +e+ +  d   +++  + +++++  +v+   +  +    +vf++ ++ e+ sl+ef+e +++
  MMETSP1061-20121228|6810_1  76 KVLVTGGAGFIGSNVAEFLLARGDD---VVIVDEIND---YYDVSIKESNLRLLQESYPEeGRVKIYRGDICDEDL----MEQIFETEQPKWVCHMAARAGVrpsIQDPFVYIHSNIKGTTQLMELSHKYGVENFVFASSSSVYGG-SKST-FFSEEENVDNP---VSPYAASKKACELLAYTYHHLyKLNISGLRFFTVYGP--RGRPDMAPFkFIDRVSRGVEMQQFGDGSSSRD-YTYISDIVDGVVRAIDRRHK---YEVFNLGKG-EGTSLKEFIELVQK 338
                 69********************855...335556665...5666666667788888888878********988875....34444468889999*99998752224444445689*****************************95.4453.23333334444...57************99998888888888888888884..77777776524677888888888888888555.55555555544444444434...467888884.67888888888766 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     5e-06    0.0013     406     485 ..      66     151 ..      57     170 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 5e-06
   TIGR02632 406 mPkekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaa.....eavaaelvdkfG.adkavalkldvtdeeavkaafa 485
                  P + ++  + +lvtGga+ iG++va  l ++G  vv++d  ++       e+  + l++ +  ++++   + d+ de+ +++ f+
  MMETSP1061-20121228|6810_1  66 TPVQPHVGYKKVLVTGGAGFIGSNVAEFLLARGDDVVIVDEINDYYdvsikESNLRLLQESYPeEGRVKIYRGDICDEDLMEQIFE 151
                 566667778899***************************96443320000022223344555413455556778888877777776 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     3e-05    0.0077       2      36 ..      75     109 ..      74     156 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3e-05
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleee 36 
                 k +lvtG a+ ig ++a+ l a G +vv++d  ++
  MMETSP1061-20121228|6810_1  75 KKVLVTGGAGFIGSNVAEFLLARGDDVVIVDEIND 109
                 679************************99885433 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.8e-05     0.012       2      68 ..      76     150 ..      75     176 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.8e-05
   TIGR02415   2 valvtGaaqGiGkaiaerLakdGfavavad.ln...eetaketakelke....kgtkavavkldvsdkseveeav 68 
                   lvtG+a  iG+++ae L + G +v+++d +n   + ++ke   +l +    ++++ ++++ d+ d + +e++ 
  MMETSP1061-20121228|6810_1  76 KVLVTGGAGFIGSNVAEFLLARGDDVVIVDeINdyyDVSIKESNLRLLQesypEEGRVKIYRGDICDEDLMEQIF 150
                 579************************998444443455555555444411113456677777777777666655 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00012      0.03       1      69 [.      77     152 ..      77     168 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00012
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterske........ekaeelaeelkeagvkaaavkldvsdeeevkelvee 69 
                 +lvtG++  iG+++a+ l ++g +vvi ++ ++        ++++ l+e+  e  +++++++ d+ de+ +++++e+
  MMETSP1061-20121228|6810_1  77 VLVTGGAGFIGSNVAEFLLARGDDVVIVDEINDyydvsikeSNLRLLQESYPE-EGRVKIYRGDICDEDLMEQIFET 152
                 69***********************9987654311111000222333333333.45677788888888877777765 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017     0.043       2     115 ..      77     213 ..      76     220 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00017
   TIGR03649   2 iLllgGtGkvasriarllaaasvpllvasrssssaaledekavkFdwldedtyenvf...ssddemekeelisavylvappvl......................dlasllikFidvavkkgvkrfvllsasaiekGgp 115
                 +L++gG G ++s++a++l a + ++++    ++  +  + k+ +  +l+e+ y +         ++ +e+l++ ++ ++ p                         +++ +++ +++  k gv+ fv+ s+s++  G +
  MMETSP1061-20121228|6810_1  77 VLVTGGAGFIGSNVAEFLLARGDDVVIVDEIND-YYDVSIKESNLRLLQES-YPEEGrvkIYRGDICDEDLMEQIFETEQPKWvchmaaragvrpsiqdpfvyihSNIKGTTQLMELSHKYGVENFVFASSSSVYGGSK 213
                 8*********************99999886664.45555666666666544.433221223467788889******999888789*******************999999**********************9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      211  (0.0514383); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.41
# Mc/sec: 1352.08
//
Query:       MMETSP1061-20121228|6815_1  [L=989]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.43
# Mc/sec: 3035.75
//
Query:       MMETSP1061-20121228|6818_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2663.35
//
Query:       MMETSP1061-20121228|6820_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1567.37
//
Query:       MMETSP1061-20121228|6819_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 848.50
//
Query:       MMETSP1061-20121228|6822_1  [L=1313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       301  (0.0733788); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.47
# Mc/sec: 3687.27
//
Query:       MMETSP1061-20121228|6821_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-115  382.8   0.0   3.4e-115  382.5   0.0    1.1  1  TIGR01464 hemE: uroporphyrinogen decarboxylase
    1.3e-23   81.6   0.0    1.6e-23   81.4   0.0    1.1  1  TIGR01463 mtaA_cmuA: methyltransferase, MtaA/CmuA family


Domain annotation for each model (and alignments):
>> TIGR01464  hemE: uroporphyrinogen decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.5   0.0  1.6e-118  3.4e-115       2     337 ..      55     397 ..      54     398 .. 0.95

  Alignments for each domain:
  == domain 1    score: 382.5 bits;  conditional E-value: 1.6e-118
   TIGR01464   2 llkalkgekvdrvPvWlmRQaGRylpeYrelrekagdflelckdpdlavevtlqPlrrlgvDAaIlFsDIlvilealglelefeegkgpvleepireaedvkklkevdvekeleyvleaikllreeleeevpliGFaGaPfTlasYlieGggskdlakakkflyeepealkaLlekltdatieYlseQvkaGadavqiFdswagaLseedfeefvlpylkkiieelkkr.ekvPvilfakgagelleelaetgadvvglDwsvdlkeaaklvkkkv.........alQGnldPavllaskealeekvekilealkegksryifNlGHGilpetppenvkalvelvh 337
                 l++a+kgekv+r+PvW+mRQaGR + eYr+l++k++ f++ ++ p++avev+lqP+r ++ D+ IlFsDIl++l+++g+e+++ ++ gp++   i++ +dvk+++++d++++ ++v+e++++lr+e+  e++++GF+G P+Tla+Y+ieG++sk++ ++kk++++ep+ l+++l++l+d++ +Y   Q++ Ga+++qiFdswag+Ls +d+eef+ py k+i++++kk+ +++P+++++k++g+l+e++a tgadvv+lDw+vd++e ++++ k+           +QGnldP +ll+++++++e++++il++++   +++++NlGHGi   tp+en + ++e+v+
  MMETSP1061-20121228|6821_1  55 LIRAAKGEKVERTPVWMMRQAGRHIQEYRDLCKKYPTFRQRSEIPEVAVEVSLQPWRNYKTDGCILFSDILTPLPGVGCEFTIDDKLGPIMDP-IKNWDDVKRMHPIDPSAAAPFVAETLQILRKEVGPETAVLGFVGCPYTLATYMIEGKTSKEYLEIKKMAFNEPKLLHTILQNLADSIGDYALFQIENGAQLIQIFDSWAGHLSARDYEEFAAPYQKQILDKIKKHhPEIPTVVYIKHSGALIERMAGTGADVVSLDWTVDMAEGRDRIAKGRemaglsgrgGVQGNLDPGILLSNHDTIRERTHEILKKAG--PTGHVMNLGHGIEACTPEENAACFIETVR 397
                 789***************************************************************************************995.7789***********************************************************************************************************************************55*************************************9998765312222222279*************************666..78*************************98 PP

>> TIGR01463  mtaA_cmuA: methyltransferase, MtaA/CmuA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   7.6e-27   1.6e-23       9     337 ..      55     398 ..      47     401 .. 0.79

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 7.6e-27
   TIGR01463   9 llaAvekqrvdkvppcvvtqta..tvelmeecga..awpeAhsdaeamAklaiaayevvGleavrlpfdltveaEvlgCeldagkkkrPsvvksPapknladlevkenlllkegripvvleaikilrekygdelpiigslegPitlAsqligve...efl...kylstdpdlakavlelaadiviayaklmveaGadviailDPvaSsdllspetykefvlpyqkklvaeikei..dsvtvlHiCgktskilsdiaksGveglsvdekvgvaeakk..vigdeis.......lvGnldpvsvllnGtaekvkklakevleaG...vdivapgCdiasmtpleNlkalveacke 337
                 l++A ++++v++ p+ ++ q +  + e  + c    ++ +    +e+  ++  ++++    +  +l  d+ ++   +gCe  + +k  P ++  P  kn +d++  +         p v e  +ilr+ +g+e ++ g ++ P tlA  +i ++   e+l   k  +++p l++ +l+  ad    ya  ++e+Ga+ i+i D  a    ls   y+ef+ pyqk++ ++ik+   + +tv+ i  +  ++++ +a +G + +s d  v++ae++   ++g e+        + Gnldp  +l n   + ++++++e+l++    + ++  g +i+  tp+eN   ++e+  +
  MMETSP1061-20121228|6821_1  55 LIRAAKGEKVERTPVWMMRQAGrhIQEYRDLCKKypTFRQRSEIPEVAVEVSLQPWRNYKTDGCILFSDILTPLPGVGCEFTIDDKLGP-IMD-P-IKNWDDVKRMHPI-DPSAAAPFVAETLQILRKEVGPETAVLGFVGCPYTLATYMIEGKtskEYLeikKMAFNEPKLLHTILQNLADSIGDYALFQIENGAQLIQIFDSWAGH--LSARDYEEFAAPYQKQILDKIKKHhpEIPTVVYIK-HSGALIERMAGTGADVVSLDWTVDMAEGRDriAKGREMAglsgrggVQGNLDPGILLSN--HDTIRERTHEILKKAgptGHVMNLGHGIEACTPEENAACFIETVRN 398
                 7788888888888888886654213344444433113445555567788899999999999999******************9998877.455.4.799***9999999.7778899**********************************865222666232456899**********************************99976..99*******************97522678888884.667899******************99998622345555332222226788888888876..6888888888887531335799*******************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2127.66
//
Query:       MMETSP1061-20121228|6825_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.13s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|6823_1  [L=758]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.27
# Mc/sec: 3705.47
//
Query:       MMETSP1061-20121228|6824_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   14.4   0.0     0.0051   14.4   0.0    2.1  2  TIGR03187 DGQHR: DGQHR domain
  ------ inclusion threshold ------
      0.019   12.0   1.5      0.046   10.8   1.1    1.6  1  TIGR03638 cas1_ECOLI: CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI
        3.4    4.3  18.7         11    2.5  11.4    2.2  2  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR03187  DGQHR: DGQHR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   2.1       1.2   1.7e+03     194     246 ..      14      66 ..       3      92 .. 0.60
   2 !   14.4   0.0   3.7e-06    0.0051      93     125 ..     224     261 ..     196     332 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.2
   TIGR03187 194 akrskklitlaalvdavlrllgkkagvkkdeneeeileillefweavsevfpe 246
                 +kr +   t aa+++a ++  + ++++k +e + + +e+ ++ ++av++ +++
  MMETSP1061-20121228|6824_1  14 RKRAEAEATEAAAKKARAEAKKVEEQKKRAEAQAKFAEEESNKLKAVETMLQK 66 
                 55666666666666666666666666666666666666666667776666654 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 3.7e-06
   TIGR03187  93 p....eedasalivDGQHRlaaiedaekespe.aketi 125
                      ++d + +++DGQHR   ++ +++++++ +k++i
  MMETSP1061-20121228|6824_1 224 IclyeDADGKLFVIDGQHRVGMMQALREQRNKiKKDKI 261
                 14446788999********9999988888888866655 PP

>> TIGR03638  cas1_ECOLI: CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.1   3.3e-05     0.046      83     144 ..      31      93 ..      21     112 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.3e-05
   TIGR03638  83 aaglaetrsaarlerqarlvadekkrlevarrmYelrFgeel.pekatleqlrglEGarvkev 144
                 a++++ +++ +r+e+qa+++ +e+++l++++ m + r +++   ek + e lr + G++ k++
  MMETSP1061-20121228|6824_1  31 AEAKKVEEQKKRAEAQAKFAEEESNKLKAVETMLQKRKQQQIeLEKIEAELLRKTNGIKKKKA 93 
                 67778889999*************************998876478999999******997765 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5  11.4    0.0083        11     155     254 ..      11     106 ..       2     113 .. 0.57
   2 ?    1.4   0.0     0.018        25     196     259 ..     217     311 ..     117     324 .. 0.58

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0083
   TIGR03794 155 vakqrqllsrklaklkrarillqqarkeqekrdeadk...aeaeyelqtkadeeeletvvaklkqadlqlasvaekeletvearikevreeieeleaklnlnt 254
                 ++      +rk a+ + ++   ++ar e +k +e+ k   a+a+++ ++  + + +et+++k kq++++l+   e el+ ++  ik+ + e+ +le++++ ++
  MMETSP1061-20121228|6824_1  11 EE------ERKRAEAEATEAAAKKARAEAKKVEEQKKraeAQAKFAEEESNKLKAVETMLQKRKQQQIELE-KIEAELLRKTNGIKKKKAELLKLETEIEVES 106
                 22......22222222333333333333322222111000222222223333444589999*********9.66789999******************99887 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.018
   TIGR03794 196 y..............................elqtkadeeeletvva..klkqadlqlasvaekeletvearikevreeieeleaklnlnteivsq 259
                                                +l ++ ++ + ++ ++  + k   ++  + +ek  ++v +++ + r++ ++l+   n+ t++ ++
  MMETSP1061-20121228|6824_1 217 ElgfpgiiclyedadgklfvidgqhrvgmmqALREQRNKIK-KDKIIeiEGKSEGVAIWQDQEKYFQNVLVEVYSERSNANALHLTNNATTTVNTT 311
                 14445555555555555555555555544431111111111.222221333344444444567778888888888888888888888887777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       524  (0.127743); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.31
# Mc/sec: 1911.71
//
Query:       MMETSP1061-20121228|6826_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 755.27
//
Query:       MMETSP1061-20121228|6827_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 677.54
//
Query:       MMETSP1061-20121228|6829_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 873.16
//
Query:       MMETSP1061-20121228|6828_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1702.66
//
Query:       MMETSP1061-20121228|6831_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-14   49.4   0.2    5.1e-05   20.6   0.1    3.3  3  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
  ------ inclusion threshold ------
      0.027   11.9   0.0      0.096   10.0   0.0    1.9  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   2.5e-08   5.1e-05       4      52 ..     109     165 ..     106     201 .. 0.83
   2 !   18.9   0.0   8.5e-08   0.00018      61     111 ..     219     273 ..     176     291 .. 0.73
   3 !    6.4   0.0   0.00055       1.1     221     242 ..     436     457 ..     379     463 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 2.5e-08
   TIGR03695   4 vlvlLHGflgskedwqalieeleekfsv........lalDLpgHGkskslkekeakd 52 
                 ++++LHG+lgs+++ + +++++ ++ s+        +++DL gHG+s  ++++e ++
  MMETSP1061-20121228|6831_1 109 TVLFLHGLLGSGRNLKTFARKVVQQQSSnqgscrggILVDLRGHGTSFRTQKREEHS 165
                 799*************9999986655555677799***********97766655554 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 8.5e-08
   TIGR03695  61 lkellekl..kiekviLvGYSlGGRialalaleape..rleglilesaspGLese 111
                 +++l  +l       +LvG S GGR+al++a+   e   l++l+l  + pG ++e
  MMETSP1061-20121228|6831_1 219 SSQLSLQLqpPPPARVLVGHSFGGRLALEYAAGVAEtqPLKALWLLDTVPGEANE 273
                 3344444411345678***************98877436*********9996654 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.00055
   TIGR03695 221 palklevieeaGHnihlenpea 242
                  +++l+v+++aGHn+h+++ + 
  MMETSP1061-20121228|6831_1 436 TNFHLHVLPSAGHNVHIDDLQG 457
                 5789************998665 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   4.7e-05     0.096     100     143 ..     235     281 ..     232     303 .. 0.75
   2 ?   -4.0   0.0      0.89   1.8e+03     184     202 ..     390     408 ..     369     416 .. 0.40

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 4.7e-05
   TIGR01250 100 llgqSwGglLaqeYa..lkyqqhlkgliissml.asipeyvkelnrl 143
                 l+g+S+Gg La+eYa  +   q lk+l +  ++  +++e+v  +  +
  MMETSP1061-20121228|6831_1 235 LVGHSFGGRLALEYAagVAETQPLKALWLLDTVpGEANETVDRVLAT 281
                 79************944556889999977666524677777666555 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 0.89
   TIGR01250 184 trkqpealkrlkstvrtev 202
                 t++  ++ +++k++ +t+v
  MMETSP1061-20121228|6831_1 390 TNTETNTNTETKNKNKTQV 408
                 2222222222222233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 2045.83
//
Query:       MMETSP1061-20121228|6830_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-227  753.7  12.3   2.8e-227  753.5   8.5    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
   2.3e-133  443.5  14.1   2.7e-133  443.3   9.8    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   2.5e-119  396.8   6.2   3.3e-119  396.4   4.3    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
    1.2e-99  332.1  11.2    1.4e-99  331.8   7.7    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    4.8e-97  323.4   7.9    6.3e-97  323.1   5.5    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    5.6e-97  323.4   9.5    7.9e-97  322.9   6.6    1.1  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    1.3e-93  312.2  13.5    2.7e-93  311.2   9.4    1.4  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    1.8e-82  275.3   6.4    2.1e-82  275.1   4.5    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    2.4e-68  228.8   9.0    3.9e-68  228.1   6.2    1.2  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    5.6e-16   55.9  12.0    6.5e-11   39.2   2.7    3.1  3  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  753.5   8.5  6.9e-230  2.8e-227       1     533 [.      12     564 ..      12     565 .] 0.95

  Alignments for each domain:
  == domain 1    score: 753.5 bits;  conditional E-value: 6.9e-230
   TIGR02340   1 lalsGerksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkra.delvk.rkvhPtsvisGyrlalkeavkyikeklavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtne........kgetkyPikavnilkahGksaresllvk.Gyalnctvasqqmpkrvk.......kakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleela.ttlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlke.ekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkpee 533
                 l+++G r+sGedvr  nv+avva+ani+k+slGPvGldkmlvdd+GdvtitndGatil++levehPaa++lv+la lqdkevGdGttsvv+l+aellkr+  elv+ + +hPt+++ Gyr alk a+ yike++ + v++l ++ l+ +akts+sskii++e+++f++l+vdav++v +t+e        k+++ yP+ a++ilk hGks  es+l+k G++ln+t+asq mp+ +        ++kia++d+nlq++++++gv+i ++dp+++e+i++re+d++ke+i+kil++Ga+vvlttkGidd ++ky+veagv++ rrv kedlkr+akatG+++v ++ad+eG+e+++ s lG++  ++e r++d el+ i g   + +++i+lrGan++llde++rslhd+lcv+kr+les+++v+GgGaveaal++yl+e+a +tl++reqla+ +fa+all+iPk+lavnaakd +elv+kl+++ha++q  + +  +lk++Gldl+ng+ird++ aGv+ePa+sk+ksl+fateaaitilridd i+++p +
  MMETSP1061-20121228|6830_1  12 LFIQGSRESGEDVRVGNVTAVVALANIMKSSLGPVGLDKMLVDDIGDVTITNDGATILEQLEVEHPAARLLVDLARLQDKEVGDGTTSVVLLSAELLKRGlGELVQkQGLHPTTILAGYRTALKAAIAYIKESILTPVSSLDSTHLLQAAKTSMSSKIIGKEGNFFAELAVDAVKSVAHTKEvtgkngvtKKKSVYPLSAIHILKVHGKSSLESYLMKgGFVLNATRASQGMPTFLGdpndeasEVKIAMIDMNLQRHRMAMGVNIQIKDPKEIERIKQREVDLTKEKIQKILDTGAKVVLTTKGIDDTCMKYFVEAGVFCARRVPKEDLKRLAKATGGQVVITMADMEGDESFDESALGKCRAIQETRVGDGELLKIFGCAGSGASTIVLRGANEYLLDEIDRSLHDSLCVIKRMLESNSLVPGGGAVEAALNVYLQEYAlKTLDTREQLAVEAFADALLVIPKTLAVNAAKDGAELVSKLKSIHAKSQRPDcDDMTLKNYGLDLVNGEIRDSLAAGVVEPAISKIKSLRFATEAAITILRIDDRITVEPIQ 564
                 5799***********************************************************************************************8569996257********************************************************************887643333333367889*********************9846*************8664333333389**************************************************************************************************************************************************************************************************9569**********************************************9887999***************************************************99865 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  443.3   9.8  6.5e-136  2.7e-133      10     519 ..      17     559 ..      12     561 .. 0.91

  Alignments for each domain:
  == domain 1    score: 443.3 bits;  conditional E-value: 6.5e-136
   TIGR02339  10 qrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLleka.edLl.eqdihPtviveGyrkaaekalevi.deiaekidvedkellkkvaetsltskavaeeakdklaelvveavkqvvekre........dgkykvdldnikiekkkGgsiedtelve.GivvDkevvhegmPk.......rvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkei......eesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreya.akieGreqlaveafadaleeiprilaenaGldpidalvelRakheke........gnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                 +r++g+d++  n++a+ a+a+++ks+lGP GlDkmLvd +GdvtitnDGatil+++++ehPaa+llv+ a+ qd+evgDGtt++v+l+ eLl+++  +L+ +q++hPt i  Gyr+a + a   i ++i + ++  d   l + a+ts++sk +  ++ +  ael+v+avk+v++++e        ++k +  l  i+i k +G+s  ++ l++ G v++  +  +gmP+       + +++kia++d++l+ ++ ++ ++++i++p+++++  ++e +l ke+++ki d+Ga+vv+++kgiDd+  +y+ ++G++  rrv k+D+++la+atG+++v ++ ++      +es LG+  +++e +vg+ +l+ + g++ + a ti+lrG +e ++de++R+l+D+l v+k +le++++v+GgGave++l   l+eya +++  reqlaveafadal  ip++la na  d  +++ +l++ h+k+          kn+g+d ++gei d l++gv+ep+  k + ++ ateaa+ ilriDd i+
  MMETSP1061-20121228|6830_1  17 SRESGEDVRVGNVTAVVALANIMKSSLGPVGLDKMLVDDIGDVTITNDGATILEQLEVEHPAARLLVDLARLQDKEVGDGTTSVVLLSAELLKRGlGELVqKQGLHPTTILAGYRTALKAAIAYIkESILTPVSSLDSTHLLQAAKTSMSSKII-GKEGNFFAELAVDAVKSVAHTKEvtgkngvtKKKSVYPLSAIHILKVHGKSSLESYLMKgGFVLNATRASQGMPTflgdpndEASEVKIAMIDMNLQRHRMAMGVNIQIKDPKEIERIKQREVDLTKEKIQKILDTGAKVVLTTKGIDDTCMKYFVEAGVFCARRVPKEDLKRLAKATGGQVVITMADMegdesfDESALGKCRAIQETRVGDGELLKIFGCAGSGASTIVLRGANEYLLDEIDRSLHDSLCVIKRMLESNSLVPGGGAVEAALNVYLQEYAlKTLDTREQLAVEAFADALLVIPKTLAVNAAKDGAELVSKLKSIHAKSqrpdcddmTLKNYGLDLVNGEIRDSLAAGVVEPAISKIKSLRFATEAAITILRIDDRIT 559
                 699******************************************************************************************97445652679*****************998835699************************.6999**************99874332222223456678999*****************94599***********72222222456789************************************************************************************************998873322225889***********************************************************************************56799*************************************99997522222222469*********************************************885 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  396.4   4.3    8e-122  3.3e-119      16     520 ..      21     560 ..      15     562 .. 0.90

  Alignments for each domain:
  == domain 1    score: 396.4 bits;  conditional E-value: 8e-122
   TIGR02345  16 GkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellke.akpli.eeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk...............liGvkkvkGGaledsvlvkG.vafkktfsyaG...feqqPk.kfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdlead......vlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllreks.kkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhak.....kge....kwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetika 520
                 G    + n+ a+va+a+i+k+ lGP G dk++v++    +++ndGatil++l++ hPaa+llvd+a+ qd+evGdGttsvv+l++ellk  + +l+ ++glhp  i+ ++r+alk+ai+ +ke  ++  ++ ++    l + a+t++ssk+i +e +ff+++ vdav+s+ + +   +                i + kv+G +  +s l+kG   ++ t +  G   f   P  + ++ ki++++++l+ +    + +i+++d+++ ++i + e ++  ek++ki+++Ga+vvl+ + i d   +yf +  +fca rv++edlkr++katG++++ ++ d+e d       lGkc   +e+++G        g+  + a+t++lrG+ e +l+e++rslhd++++++r l ++++v+GGGa+e  l  +l+e++ k++d ++ql +ea+a+al viP++la na  d  e++ kl++ hak       +    k++G+d+ + ei d l+a v eP++ k+  l+ ateaa til +d+ i++
  MMETSP1061-20121228|6830_1  21 GEDVRVGNVTAVVALANIMKSSLGPVGLDKMLVDDIGdVTITNDGATILEQLEVEHPAARLLVDLARLQDKEVGDGTTSVVLLSAELLKRgLGELVqKQGLHPTTILAGYRTALKAAIAYIKESILTPVSSLDS--THLLQAAKTSMSSKIIGKEGNFFAELAVDAVKSVAHTKE-VTgkngvtkkksvyplsAIHILKVHGKSSLESYLMKGgFVLNATRASQGmptFLGDPNdEASEVKIAMIDMNLQRHRMAMGVNIQIKDPKEIERIKQREVDLTKEKIQKILDTGAKVVLTTKGIDDTCMKYFVEAGVFCARRVPKEDLKRLAKATGGQVVITMADMEGDesfdesALGKCRAIQETRVGDGELLKIFGCAGSGASTIVLRGANEYLLDEIDRSLHDSLCVIKRMLESNSLVPGGGAVEAALNVYLQEYAlKTLDTREQLAVEAFADALLVIPKTLAVNAAKDGAELVSKLKSIHAKsqrpdC-DdmtlKNYGLDLVNGEIRDSLAAGVVEPAISKIKSLRFATEAAITILRIDDRITV 560
                 5555689***********************999998779*************************************************983456763689***********************98876644444..68999***************************9984332.2235799999******99*********9999999986366677766666222666786256788************************************************************************************************9999887542222227*************98877777999**********************************************************93457899***************************************9554431.1567789********************************************9986 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.8   7.7  3.4e-102   1.4e-99       4     514 ..      18     558 ..      15     561 .. 0.89

  Alignments for each domain:
  == domain 1    score: 331.8 bits;  conditional E-value: 3.4e-102
   TIGR02342   4 kekpedvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGallda.aekllek.gihptiisesfqsaadealk.ilkelsipvdlsdrealiksattslsskvvsqyssllaplavdavlkvidsek.........dknv.dlkdikvvkklGgtiddtelieGvvltqkasksaggpt.......riekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpv...asi...dkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskka.relkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGe.........ktaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddiv 514
                 +e  edvr  n++a  a+a+++++slGp G+dk++ ++ G+v+itndGatil+qlev hpaa+llv+l++ qd e GdGttsvv+l+  ll+    +l++k g+hpt+i  ++++a++ a+  i +++ +pv+  d  +l+++a+ts+ssk++ +  +++a lavdav++v  +++         +k+v  l  i+++k  G    ++ l++G  + + +  s+g pt          + ki++i + l   +  m  ++ ++d ++++r+++ e     + ++ki  +ga v+l  k i     +d++++++   ++++ + + +e+++ ++k+ G + v   a++   +++ + +lGk   ++e +++d++++ki G++ +g + ++++rG+n+ ++de +rslhd+lcvi+ +++  +l++GGGa e  + + l+++a ++l+  e++ v afadal vip tla na  +  ++v++l++ ha+ +         k++G+++++g i d l   v+ p++ +  ++++a+e+  +il+idd +
  MMETSP1061-20121228|6830_1  18 RESGEDVRVGNVTAVVALANIMKSSLGPVGLDKMLVDDIGDVTITNDGATILEQLEVEHPAARLLVDLARLQDKEVGDGTTSVVLLSAELLKRgLGELVQKqGLHPTTILAGYRTALKAAIAyIKESILTPVSSLDSTHLLQAAKTSMSSKIIGKEGNFFAELAVDAVKSVAHTKEvtgkngvtkKKSVyPLSAIHILKVHGKSSLESYLMKGGFVLNATRASQGMPTflgdpndEASEVKIAMIDMNLQRHRMAMGVNIQIKDPKEIERIKQREVDLTKEKIQKILDTGAKVVLTTKGI-----DDTCMKYFVEAGVFCARRVPKEDLKRLAKATGGQVVitmADMegdESFDESALGKCRAIQETRVGDGELLKIFGCAGSG-ASTIVLRGANEYLLDEIDRSLHDSLCVIKRMLESNSLVPGGGAVEAALNVYLQEYAlKTLDTREQLAVEAFADALLVIPKTLAVNAAKDGAELVSKLKSIHAKSQrpdcddmtlKNYGLDLVNGEIRDSLAAGVVEPAISKIKSLRFATEAAITILRIDDRI 558
                 78889*************************************************************************************9852566765439*****************983556799******************************************98764111111111223325999*********9999999997665555555666655222222246789********************************************************9975.....89******************************9876222555443479999************************9876.679***************************************************996899*****************************************9976444444444689*******************************************65 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.1   5.5   1.5e-99   6.3e-97       9     520 ..      16     558 ..      12     561 .. 0.90

  Alignments for each domain:
  == domain 1    score: 323.1 bits;  conditional E-value: 1.5e-99
   TIGR02344   9 tkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaep.flekn.ihptvivraykkaledalkvle.elsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikr..y....akvekipGGeiedsavlkG.vllnkdvthpkmrrkienp.......rivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelk......esdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakk.legveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqe........ekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddiv 520
                   resG+ ++++n++a  a+a+i++++lGp  + kml+d +G + +tndG +il +++v+hpaa+ l++l+r qd+evGdGttsv++l+ ell+     +++k+ +hpt i+ +y++al+ a+  ++  +  pv   d+++ll++ k+s+++k++++ ++  ++la+davk v+++++ + k  v  k+  y    +++ k+ G +  +s+++kG  +ln   +   m  ++ +p       +i ++d +l+ ++     n++i++ ++++r+ q e +  k+  ++i+++ +++v+t kG+ d   +y++ a++   rrv k d +r+a+++G ++v  + +++      es +G ++  ++  ++Gd     +  c    a ti+lrGa   +l+e++r l+d+l v++ +l + +lvpGGGa+e a  v+l++ a k l+  eql +ea adal vip+tl+ n+  +    +++l++ ha++        + k++G+d  +G+i d   +g+ ep   k ++++ a e+a+ +lridd +
  MMETSP1061-20121228|6830_1  16 GSRESGEDVRVGNVTAVVALANIMKSSLGPVGLDKMLVDDIGDVTITNDGATILEQLEVEHPAARLLVDLARLQDKEVGDGTTSVVLLSAELLKRGLGeLVQKQgLHPTTILAGYRTALKAAIAYIKeSILTPVSSLDSTHLLQAAKTSMSSKIIGKEGNFFAELAVDAVKSVAHTKEVTGKNGVTKKKsvYplsaIHILKVHGKSSLESYLMKGgFVLNATRASQGMPTFLGDPndeasevKIAMIDMNLQRHRMAMGVNIQIKDPKEIERIKQREVDLTKEKIQKILDTGAKVVLTTKGIDDTCMKYFVEAGVFCARRVPKEDLKRLAKATGGQVVITMADMEgdesfdESALG-KCRAIQETRVGDGELLKIFGCAGSGASTIVLRGANEYLLDEIDRSLHDSLCVIKRMLESNSLVPGGGAVEAALNVYLQEYALKtLDTREQLAVEAFADALLVIPKTLAVNAAKDGAELVSKLKSIHAKSqrpdcddmTLKNYGLDLVNGEIRDSLAAGVVEPAISKIKSLRFATEAAITILRIDDRI 558
                 579******************************************************************************************9864326655449*******************98357889****************************************998877777677777733233336899******99999999626788888888999998877555555579*********************************************************************************************9887766521111155566.4666777889**999999*************************************************************997625677899********************999999999999999988888998877899*******************************************965 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  322.9   6.6   1.9e-99   7.9e-97      20     529 ..      16     558 ..      14     561 .. 0.88

  Alignments for each domain:
  == domain 1    score: 322.9 bits;  conditional E-value: 1.9e-99
   TIGR02343  20 kkrlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqae.kll.dkGihpikiaeGfekaakvaveklee.iaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadle..........rkdv.dfdlikvegkvGgsledtklik.Gilidkdlshpqmkkevkd.......akiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeels......eeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadkl.sgveqyairafaealeeiplalaensGldpietlsevkakqlkeknp........alGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvi 529
                 ++r  G ++   n++a+ a+a+i+++slGp Gldk+l++  gd+t+tndGatile+++++++ a+llv+l++ qd+e+GdGtt+vv+l++ ll++   +l+ ++G+hp  i  G+ +a+k a++ ++e i   +s    +  +ll+aakts++ski+ k+ + +ae+avdav +va  +          +k v  +  i++ +  G+s  ++ l+k G +++   +   m+  + d       +kia++   ++  ++    +++i+ ++e +++++ e +  +e i++i ++Ga++v+   G dd   + ++++++   r v  ++l+ +a atgG++v  + +++      e+ lGk++ ++e+++G     ll i  ++ s a ti++rG+n+ +++e  rslhd+lcv++ +++++++v GGGa e a+ + ++e a k+  + eq a+ afa+al  ip +la n+  d  e +s++k+   k++ p        ++G+d  +   +d     v+e+ i+k++ +++at+    il+idd i
  MMETSP1061-20121228|6830_1  16 GSRESGEDVRVGNVTAVVALANIMKSSLGPVGLDKMLVDDIGDVTITNDGATILEQLEVEHPAARLLVDLARLQDKEVGDGTTSVVLLSAELLKRGLgELVqKQGLHPTTILAGYRTALKAAIAYIKEsILTPVSS--LDSTHLLQAAKTSMSSKIIGKEGNFFAELAVDAVKSVAHTKevtgkngvtkKKSVyPLSAIHILKVHGKSSLESYLMKgGFVLNATRASQGMPTFLGDpndeaseVKIAMIDMNLQRHRMAMGVNIQIKDPKEIERIKQREVDLTKEKIQKILDTGAKVVLTTKGIDDTCMKYFVEAGVFCARRVPKEDLKRLAKATGGQVVITMADMEgdesfdESALGKCRAIQETRVGD--GELLKIFGCAGSGASTIVLRGANEYLLDEIDRSLHDSLCVIKRMLESNSLVPGGGAVEAALNVYLQEYALKTlDTREQLAVEAFADALLVIPKTLAVNAAKDGAELVSKLKSIHAKSQRPdcddmtlkNYGLDLVNGEIRDSLAAGVVEPAISKIKSLRFATEAAITILRIDDRI 558
                 68999****************************************************************************************99752555257*******************9987614444443..56778********************************97532222222221344424666777777777666667776268999999999999988888888888**************************************************************************************************999886222222567************96..579****************************************************************998752799***********************************9988876542222222279***9999999********************************976 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.2   9.4   6.5e-96   2.7e-93       7     516 ..      16     562 ..      12     565 .] 0.87

  Alignments for each domain:
  == domain 1    score: 311.2 bits;  conditional E-value: 6.5e-96
   TIGR02341   7 aeeeraenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellrea.eklvnk.kihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrl.........kgstn......leaiqiikklggklddsylde.gfllekkig.vnqpkri.....enakiliantaldtdkvkv.fgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstf......depelvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqk.vagkkalaveafakalrqlptiladnagfdsaelvaklraahaegn.........stagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniikaap 516
                 +++e +e+ r+      +a+ +++ks+lgp g+dk+l+      ++++tndgatil ++ ++ paa++lvd+++ qd+evgdgttsv++l+aell++   +lv+k  +hp ti++gyr+a+kaa+  +k+s +   s        ll+ a+t++sski+ ++ + fa+lavdav  +          g t       l ai+i+k+ g +  +syl + gf+l+ +      p  +     e +++ ia   ++ ++ ++ +g ++++     + ++++ e +  kek++kil  +  v +  + i +   + f +agv +      e ++rla  tgg++v t+      ++ +   lg+c  i+e  +g+ +llk+ g++   a tivlrga + +lde +rslhd+l+v+ +  +    v ggg+ e  +   ++e a k  + ++ laveafa al  +p  la na  d aelv+kl++ ha+ +         ++ gldl +gei d  + g+ve    k + +  a+eaa  +lr+d+ i   p
  MMETSP1061-20121228|6830_1  16 GSRESGEDVRVGNVTAVVALANIMKSSLGPVGLDKMLVDDIG--DVTITNDGATILEQLEVEHPAARLLVDLARLQDKEVGDGTTSVVLLSAELLKRGlGELVQKqGLHPTTILAGYRTALKAAIAYIKESILTPVSS--LDSTHLLQAAKTSMSSKIIGKEGNFFAELAVDAVKSVahtkevtgkNGVTKkksvypLSAIHILKVHGKSSLESYLMKgGFVLNATRAsQGMPTFLgdpndEASEVKIAMIDMNLQRHRMaMGVNIQIKDPKEIERIKQREVDLTKEKIQKILDTGAKVVLTTKGIDDTCMKYFVEAGVFCARRVPKEDLKRLAKATGGQVVITMadmegdESFDESALGKCRAIQETRVGDGELLKIFGCAGSGASTIVLRGANEYLLDEIDRSLHDSLCVIKRMLESNSLVPGGGAVEAALNVYLQEYALKtLDTREQLAVEAFADALLVIPKTLAVNAAKDGAELVSKLKSIHAKSQrpdcddmtlKNYGLDLVNGEIRDSLAAGVVEPAISKIKSLRFATEAAITILRIDDRITVEP 562
                 67899********************************98766..99*************************************************985356776648*******************999999887666..446789***************************86542222222211222133333499**********99999986527***987541445665533333678899999999999887648********************************************************************************9983322212345789*****************************************************************************999998662699*************************************999765333323233578*******************************************999887 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.1   4.5   5.2e-85   2.1e-82      16     517 ..      21     558 ..       8     563 .. 0.88

  Alignments for each domain:
  == domain 1    score: 275.1 bits;  conditional E-value: 5.2e-85
   TIGR02346  16 leeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLeka..eelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsek...........fnvdnirvvkllGgslsdsevlkG.lvlk..reaegsvk.......rvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspee......lGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaekl.kgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaah.........kkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqii 517
                  e+  + n+ a+  l++i++ slGP g +k++++ +  + +tnD atil++lev+hPaa+llv++++ q++e+GDgt  v+ l++elL++   e + ++Gl+p+ i+ Gy +alk+a++ ++e + + v+ l    +l++a k+s+ssk +g+  +++ael  +a+ +v  +++ +           + +  i + k+ G s  +s+++kG +vl+  r ++g  +       + ++ k+a+    l+ +       + +k+ +e+    + e    +++i++i d+g+kv++++  + d  + y  + +++  +   k +l+rl+k+ g + ++ ++  + +e      lG++ +++ + +g+ +   i    + s  stivLrG+ + lld+i+r+++D + v+k ++  + l+pG+ga+e+ L   l++ya k+  + eq+a++ fa a  +iP+tla na  +  e++skL + h         +   k++g+d+ ++++  +d+  + + +   +k+ ++++ateaa+t+L++D  i
  MMETSP1061-20121228|6830_1  21 GEDVRVGNVTAVVALANIMKSSLGPVGLDKMLVDDIGDVTITNDGATILEQLEVEHPAARLLVDLARLQDKEVGDGTTSVVLLSAELLKRGlgELVQKQGLHPTTILAGYRTALKAAIAYIKESILTPVSSLD-STHLLQAAKTSMSSKIIGKeGNFFAELAVDAVKSVAHTKEVTgkngvtkkksvYPLSAIHILKVHGKSSLESYLMKGgFVLNatRASQGMPTflgdpndEASEVKIAMIDMNLQRHRMAMGVNIQIKDPKEIERIKQREVDLTKEKIQKILDTGAKVVLTTKGIDDTCMKYFVEAGVFCARRVPKEDLKRLAKATGGQVVITMADMEGDEsfdesaLGKCRAIQETRVGDGELLKIFGCAG-SGASTIVLRGANEYLLDEIDRSLHDSLCVIKRMLESNSLVPGGGAVEAALNVYLQEYALKTlDTREQLAVEAFADALLVIPKTLAVNAAKDGAELVSKLKSIHaksqrpdcdDMTLKNYGLDLVNGEI--RDSLAAGVVEPAISKIKSLRFATEAAITILRIDDRI 558
                 4666678**********************************************************************************8632555579****************************999875.5679999***********9569***********99887766667788899999*************99999999986367753366777766888887788999**********999999999************************************************99***********************999999977654432333349************988765544444.689*******************************************************76516678*************************************6666665544445667777766655..79999999999999******************9866 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.1   6.2   9.5e-71   3.9e-68      21     521 ..      28     556 ..      17     561 .. 0.88

  Alignments for each domain:
  == domain 1    score: 228.1 bits;  conditional E-value: 9.5e-71
   TIGR02347  21 nlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqa..erlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkdee.........e...idlfmveilemkhklevdtklirG.lvldhGarhPdmkr.......kvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedlt......peslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeek.ksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadear.........evvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvde 521
                 n++a  +l++++k+ lGP G  kmlv+  Gd+ +t dG ++l++l++ hP+a l+   a  qd+ +GdGtts+v+l  ellk+   e + ++glhP  +  G+ +a k+a+ ++++  +   +++d   ll++a+ts+  k+  +  + ++e  vdav+++ + +e         +     l  + il+++ k++ +  l++G +vl+      +m++       + ++v i ++++ l+  +  +  ++  ++ +e e++ + e   ++++++ki++   kv          v+  kGid   +  + ++g+++ rr+ + +l rl  a+GG+ + ++ d++      + +lG +  + et +g+ +   i  +    + ti+++g+n++ l+ i  +++d l  +k ++e +++v+G ga+e+al  +l+e++ k++  +++l+veafa+allviPk+l+ n+  d  e + kl++ + +++         +  g+dl  ge  ++  +g+ +    k ++l+ at  a  +l +d+
  MMETSP1061-20121228|6830_1  28 NVTAVVALANIMKSSLGPVGLDKMLVDDIGDVTITNDGATILEQLEVEHPAARLLVDLARLQDKEVGDGTTSVVLLSAELLKRGlgELVQKQGLHPTTILAGYRTALKAAIAYIKESILTPVSSLDSTHLLQAAKTSMSSKIIGKEGNFFAELAVDAVKSVAHTKEvtgkngvtkKksvYPLSAIHILKVHGKSSLESYLMKGgFVLNATRASQGMPTflgdpndEASEVKIAMIDMNLQRHRMAMGVNIQIKDPKEIERIKQREVDLTKEKIQKILDTGAKV----------VLTTKGIDDTCMKYFVEAGVFCARRVPKEDLKRLAKATGGQVVITMADMEgdesfdESALGKCRAIQETRVGDGELLKIFGCAGSGASTIVLRGANEYLLDEIDRSLHDSLCVIKRMLESNSLVPGGGAVEAALNVYLQEYAlKTLDTREQLAVEAFADALLVIPKTLAVNAAKDGAELVSKLKSIHAKSQrpdcddmtlKNYGLDLVNGEIRDSLAAGVVEPAISKIKSLRFATEAAITILRIDD 556
                 8999******************************************************************************7532666669***********************997788899**********************************99976543111111111112246889*****************9648999888888898622222225667888888888888888888889999999999999999999999999999876555..........6667*************************************9999888762222224579*******************************************************************************8753889*************************************99999988888999999999***************************************9997 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   2.7   1.6e-13   6.5e-11      16     158 ..      30     172 ..      19     205 .. 0.77
   2 ?    2.7   0.1     0.019       7.8     265     322 ..     317     377 ..     290     382 .. 0.77
   3 !   18.2   0.1   3.8e-07   0.00016     373     514 ..     396     552 ..     385     562 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 1.6e-13
   TIGR02348  16 kGvdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknva..aGanpielkrGiekavekvveelkkl.skevkdke..eiaqvatisanndeeiGe 158
                 + v +la+ +k  lGP g + +l  + G  +it+dG t+  ++e+e++     a+l+ + a+  +   GdGtt  ++l+  ++k Gl +++   G  p ++  G  +a++++++ +k++  ++v++ +  ++ q a+ s + ++ iG+
  MMETSP1061-20121228|6830_1  30 TAVVALANIMKSSLGPVGLDKMLVDDIGDVTITNDGATILEQLEVEHP----AARLLVDLARLQDKEVGDGTTSVVLLSAELLKRGLGELVqkQGLHPTTILAGYRTALKAAIAYIKESiLTPVSSLDstHLLQAAKTSMS-SKIIGK 172
                 56789*************************************998877....6899999****************************98763369*********************9862467775540045555555544.344443 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.019
   TIGR02348 265 lrgvlkvaavkaPgfGdrr..kamlediailtggqviseelglkl.eevtleklGkakkvt 322
                 +  +     v a  f  rr  k+ l+ +a  tggqv+     ++  e+++ + lGk + ++
  MMETSP1061-20121228|6830_1 317 IDDTCMKYFVEAGVFCARRvpKEDLKRLAKATGGQVVITMADMEGdESFDESALGKCRAIQ 377
                 444455556899999999977899999*********9999999872567888999998875 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 3.8e-07
   TIGR02348 373 GvavikvGaatetelkekkarvedalnatraave.eGivaGGGvallraaeklee..lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkek............kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiaglll 514
                 G + i +  a e  l e    + d+l   +  +e + +v+GGG+    +   l+e  lk+  + e++ ve    al    +++a na kdga +v k+k+             + +++G +  ++e +d ++aG+++pa     +l+ a+  a  +l
  MMETSP1061-20121228|6830_1 396 GASTIVLRGANEYLLDEIDRSLHDSLCVIKRMLEsNSLVPGGGAVEAALNVYLQEyaLKTLDTREQLAVEAFADALLVIPKTLAVNAAKDGAELVSKLKSIhaksqrpdcddmTLKNYGLDLVNGEIRDSLAAGVVEPAISKIKSLRFATEAAITIL 552
                 5556666777888999999999*****99999983579*****99888888888843555556799***********999***************99876433333333322233689********************9777777777666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.47
# Mc/sec: 1586.68
//
Query:       MMETSP1061-20121228|6832_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 563.95
//
Query:       MMETSP1061-20121228|6833_1  [L=841]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 3964.39
//
Query:       MMETSP1061-20121228|6834_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   18.3   0.0     0.0033   14.7   0.0    2.1  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family


Domain annotation for each model (and alignments):
>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.9e-07    0.0033     125     158 ..     245     278 ..     236     307 .. 0.85
   2 ?    1.0   0.0     0.012        49     232     255 ..     445     468 ..     441     472 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.9e-07
   TIGR00768 125 vvlKpvfGswGklvvlvedkqeaekllealeqlk 158
                 +vlK  +Gs+G +v+ v+d +e+++++e  +q +
  MMETSP1061-20121228|6834_1 245 AVLKEPMGSRGTGVFFVRDADEIHSIIEEHRQRA 278
                 69**************************999987 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.012
   TIGR00768 232 dvagiDllesedkgllvlEvNasv 255
                  +ag Dl+  ed+ + +lE+N ++
  MMETSP1061-20121228|6834_1 445 AIAGLDLMVTEDDTIYLLEANVNP 468
                 689******************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.22
# Mc/sec: 3089.74
//
Query:       MMETSP1061-20121228|6837_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2674.00
//
Query:       MMETSP1061-20121228|6835_1  [L=793]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-07   27.4   0.4    0.00037   17.6   0.0    2.6  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      7e-05   19.6   0.0      0.066    9.8   0.0    2.5  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0012   16.5   3.2     0.0021   15.6   2.2    1.4  1  TIGR01385 TFSII: transcription elongation factor S-II
     0.0047   13.5   0.2     0.0047   13.5   0.1    2.9  4  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
  ------ inclusion threshold ------
      0.018   11.9   7.3       0.05   10.4   0.0    2.5  3  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.5   0.6       2.1   1.7e+03     374     425 ..     467     508 ..     453     540 .. 0.44
   2 !   17.6   0.0   4.5e-07   0.00037     287     393 ..     553     652 ..     544     677 .. 0.72
   3 !    7.4   0.0   0.00055      0.46     179     245 ..     690     749 ..     678     763 .. 0.72

  Alignments for each domain:
  == domain 1    score: -4.5 bits;  conditional E-value: 2.1
   TIGR01628 374 qfmqasaesrqlsigspvigaanisgrhqaaqqqavvtqavkqqlasqplnf 425
                             s++sp+ g ++   +   +qq ++ +++  +   +q  ++
  MMETSP1061-20121228|6835_1 467 TL----------SQSSPNNGQQHQGSKTGFPQQTPMGQNNHLSGSYGQTSGH 508
                 22..........3444444444333322333333333333333333333333 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 4.5e-07
   TIGR01628 287 NlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmqasaesrqlsigspvig 393
                 Nl +    ++ +++++  lF+++ ++ S  vm         F FV  +++  A++A + l+g +l+g+P+ +++Aqrk+  +a+ +   +  s   r+++++ p+ g
  MMETSP1061-20121228|6835_1 553 NLHLSGYGPGTTQAEIIALFSPYVQV-SEVVMK------ATFSFVNTNDPAGAKQAREALNGALLGGQPVRINMAQRKNRDNAQSNGSSNTGSYYGRNTTMQPPNAG 652
                 56666666666777777777777554.333443......36*************************************98777666555555555555555555555 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.00055
   TIGR01628 179 tNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit 245
                  Nl+v    +  te++lr++Fa++ +it +i k        +f+fvn  ++ +A +A e l g+ ++
  MMETSP1061-20121228|6835_1 690 KNLFVAGYGQGTTEHQLRDIFAAHAQITGIISK-------GTFSFVNTTDKLAAVRAREVLSGTMVN 749
                 478888888888888888888888888877632.......248888888888888888888776654 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00054      0.44     270     331 ..     586     647 ..     564     660 .. 0.79
   2 !    9.8   0.0   8.1e-05     0.066     234     323 ..     690     778 ..     677     791 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00054
   TIGR01648 270 dyafvhfedredavkamdelnGkeleGseievtlakPvdkesyvrytkaakgrgkeaqaaaq 331
                  ++fv  +d   a +a ++lnG  l G+++ + +a+  ++++      +  g    +++++q
  MMETSP1061-20121228|6835_1 586 TFSFVNTNDPAGAKQAREALNGALLGGQPVRINMAQRKNRDNAQSNGSSNTGSYYGRNTTMQ 647
                 5899*******************************999998766655555555555555555 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 8.1e-05
   TIGR01648 234 kilyvrnlmletteeiieksfsefkpGavervkkirdyafvhfedredavkamdelnGkeleGseievtlakPvdkesyv.rytkaakgrg 323
                 k l+v      tte  ++  f+     ++  +     ++fv  +d+ +av+a + l G+ ++G  + + +ak + +   +   t +a+g+g
  MMETSP1061-20121228|6835_1 690 KNLFVAGYGQGTTEHQLRDIFAAH--AQITGIISKGTFSFVNTTDKLAAVRAREVLSGTMVNGGMLRINFAKETGRLGTSfDLTYGAGGGG 778
                 566777777777777777777766..5555555556799*********************************9876533313344444444 PP

>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   2.2   2.6e-06    0.0021      19     122 ..      80     192 ..      65     229 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.6e-06
   TIGR01385  19 nveqvidilkqLkklpvteellketkvGlkvnklrkk......pned.ikklakeliksWKkvvi.keeksenpagakeeklqrkesvksakaek.keqavkieqkKdsssss 122
                  ++  +++l+++ +lpvt  ++k   +G+ v+++ k+      pn+  i ++++ + + WK  v+ +++k++n+++a ++   +++   s + ++ + +  k++  K+ss ss
  MMETSP1061-20121228|6835_1  80 GIDLLLHLLTNIAQLPVTKGIVKVSGMGKAVGSIEKHricidsPNKVaIVERVNAIKDAWKVSVKvRKDKPQNSTPASVSSSSKRDLDTSSQLSSpSAKKPKMDDSKKSSLSS 192
                 566778999***************************855554445546999**********9987245899999888877766655444444333033556666666655443 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.3      0.74     6e+02     322     351 ..     150     179 ..     127     203 .. 0.73
   2 !    4.2   1.1    0.0039       3.2     332     434 ..     358     476 ..     320     537 .. 0.63
   3 !   13.5   0.1   5.8e-06    0.0047     147     182 ..     585     621 ..     578     631 .. 0.81
   4 ?   -2.8   0.0      0.52   4.3e+02     148     180 ..     724     757 ..     719     763 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.74
   TIGR01645 322 lraqspatassslvtdieakavvssakkea 351
                 +++ +pa  sss   d+++ + +ss+  + 
  MMETSP1061-20121228|6835_1 150 PQNSTPASVSSSSKRDLDTSSQLSSPSAKK 179
                 567789999999999999988888776543 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0039
   TIGR01645 332 sslvtdieakavvssakkeae.evpalpqa.apavlkdeviteekPvaPsllaiPslvaplglvaPteinpsllaspqlkieekiee.................vtlgalddtlalkepske 434
                 s +   ++ ++  s+a+k     vp  p a apa ++  + t+++  +P+    Ps++a+ + v+   ++p l+ ++ + ++    +                 v l +l++tl+   p+++
  MMETSP1061-20121228|6835_1 358 SDVEQALDMTSQSSTATKVIPfFVPQQPIAaAPATQA--IPTSTTTYPPPPAQPPSGIASAETVQSLGLPPFLVGQNLHALQ-TLAGtpellrsfvdnngmydqVRLMSLVQTLSQSSPNNG 476
                 4444444444444444443332333333220222222..3333444556667779999999999986666666666544444.444447789999999999999999999***999999987 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 5.8e-06
   TIGR01645 147 kgfafve.evPeaallaleqmngallGGrnlkvgrPs 182
                  +f+fv+ + P +a+ a e +ngallGG+ +++++ +
  MMETSP1061-20121228|6835_1 585 ATFSFVNtNDPAGAKQAREALNGALLGGQPVRINMAQ 621
                 69*****899**********************99544 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 0.52
   TIGR01645 148 gfafveevPe.aallaleqmngallGGrnlkvgr 180
                 +f+fv+     aa  a e + g+++ G  l+++ 
  MMETSP1061-20121228|6835_1 724 TFSFVNTTDKlAAVRAREVLSGTMVNGGMLRINF 757
                 7999996654388889999999999999998885 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   0.9       2.8   2.3e+03      31      41 ..     263     273 ..     246     291 .. 0.50
   2 ?   10.4   0.0   6.1e-05      0.05     263     309 ..     587     633 ..     552     651 .. 0.77
   3 ?    5.7   0.1    0.0016       1.3     216     298 ..     686     760 ..     674     773 .. 0.84

  Alignments for each domain:
  == domain 1    score: -5.0 bits;  conditional E-value: 2.8
   TIGR01622  31 RdrsrdRersr 41 
                  +++rdR r++
  MMETSP1061-20121228|6835_1 263 DRKKRDRLREK 273
                 22222222222 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 6.1e-05
   TIGR01622 263 yGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslas 309
                 + F++ +d   ak+A e+lNG  l G ++++ +a+     ++ s  s
  MMETSP1061-20121228|6835_1 587 FSFVNTNDPAGAKQAREALNGALLGGQPVRINMAQRKNRDNAQSNGS 633
                 99*******************************88755444443333 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0016
   TIGR01622 216 siadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskG.yGFiqFsdaeeakeAleklNGlelAGReikvglasD 298
                   a++ L+v +     tE++Lr+iF +  +i  +          skG + F++ +d   a +A e+l G  + G  +++ +a++
  MMETSP1061-20121228|6835_1 686 NPATKNLFVAGYGQGTTEHQLRDIFAAHAQITGII---------SKGtFSFVNTTDKLAAVRAREVLSGTMVNGGMLRINFAKE 760
                 457788999999999*************9998873.........444499*******************99***9999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 2907.43
//
Query:       MMETSP1061-20121228|6838_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1240.70
//
Query:       MMETSP1061-20121228|6836_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.6   0.0      0.076   10.1   0.0    2.1  1  TIGR01767 MTRK: 5-methylthioribose kinase


Domain annotation for each model (and alignments):
>> TIGR01767  MTRK: 5-methylthioribose kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   1.9e-05     0.076     209     283 ..     300     371 ..     222     394 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.9e-05
   TIGR01767 209 tetkvidpefafyGPigfdiGtlianlllnflsrdGaeikdadaareqlledvkqvwetfeeefselwrkesadl 283
                 ++  +id e+++ GP+g diG + a  +   +++  +         e  le ++ +w+ + +  +   r++++ l
  MMETSP1061-20121228|6836_1 300 GDFCLIDWEMTHVGPMGKDIGLVTAFPVACLCAHAAQG---DTVSAESILEFLDALWSEYSKAIDLEGRDDHLSL 371
                 56678****************88776555555554444...4566789999999999999887776666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2466.83
//
Query:       MMETSP1061-20121228|6840_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 725.94
//
Query:       MMETSP1061-20121228|6839_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-06   23.9   0.0    4.5e-06   23.3   0.0    1.2  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    1.1e-05   23.4   0.0    2.7e-05   22.1   0.0    1.6  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   2.2e-09   4.5e-06      26     116 ..     363     453 ..     354     470 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 2.2e-09
   TIGR02938  26 ilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmhrdvt 116
                 i++a   f ++tGy++e+v+G+n   l    t p+    + +++      +  +ln + dg+ +  ++ va + +     + ++G+  +v 
  MMETSP1061-20121228|6839_1 363 IVFATPGFYRLTGYTPEQVLGRNCRFLQGSGTDPKAVDIVRKAIQSGSDCTVCILNYKADGTPFWNQFFVAALRDSDNCIVNYVGVQTEVE 453
                 89******************************99999************************************************998874 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.3e-08   2.7e-05      27     112 ..     363     448 ..     359     455 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.3e-08
   TIGR00229  27 ilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle.gerepvseerrvkrkdGseiwvevsvspird.aggelgvvgi 112
                 i+++ + f +++GY++e+++Grn + l  +    +   +++++++ g    +    ++ ++dG+ +w +  v+ +rd ++ ++ +vg+
  MMETSP1061-20121228|6839_1 363 IVFATPGFYRLTGYTPEQVLGRNCRFLQGSGTDPKAVDIVRKAIQsGS-DCTVCILNY-KADGTPFWNQFFVAALRDsDNCIVNYVGV 448
                 8889999*******************999999999999*******554.444444445.9****************988888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2272.10
//
Query:       MMETSP1061-20121228|6842_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 2055.83
//
Query:       MMETSP1061-20121228|6841_1  [L=853]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.8e-254  842.9   1.8   6.1e-254  842.5   1.2    1.0  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
   6.5e-167  553.1   1.1    2.9e-84  281.1   0.8    2.1  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
   3.4e-149  495.6   0.5    3.5e-75  251.5   0.0    2.1  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
     2e-120  400.7   6.4    1.7e-61  206.3   0.0    3.9  4  TIGR03689 pup_AAA: proteasome ATPase
    1.1e-20   71.5   0.0    6.7e-10   35.9   0.0    2.2  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    1.6e-14   51.5   0.0    6.7e-07   26.5   0.0    2.4  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    2.5e-10   37.6   0.7     0.0014   15.4   0.0    3.6  4  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      1e-09   35.7   0.0    1.3e-05   22.2   0.0    2.4  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    3.9e-09   33.8   0.0    1.2e-05   22.3   0.0    2.4  2  TIGR02881 spore_V_K: stage V sporulation protein K
    1.1e-08   32.3   0.9      0.007   13.2   0.1    4.5  4  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    3.3e-07   27.9   0.0      0.011   13.1   0.0    2.5  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    4.3e-07   26.6   0.5     0.0067   12.7   0.0    2.6  2  TIGR00763 lon: ATP-dependent protease La
      6e-07   25.9   1.8      0.051    9.6   0.1    4.2  4  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    1.6e-06   25.2   0.0     0.0055   13.6   0.0    3.1  3  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
    4.9e-06   24.5   0.1       0.04   11.7   0.0    2.8  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    6.2e-06   22.8   1.1       0.01   12.2   0.0    3.2  4  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
    7.9e-06   23.5   0.3      0.027   11.9   0.0    2.4  2  TIGR01351 adk: adenylate kinases
    8.6e-06   22.4   0.3      0.029   10.8   0.1    2.6  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
    1.4e-05   22.6   0.3        0.1   10.0   0.0    3.3  3  TIGR00678 holB: DNA polymerase III, delta' subunit
    4.4e-05   21.1   0.0      0.066   10.8   0.0    2.4  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
    4.7e-05   20.9   0.0       0.18    9.1   0.0    2.4  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    8.4e-05   19.1   0.1       0.14    8.5   0.0    2.3  2  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0021   14.2   0.7        1.8    4.5   0.0    3.9  4  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
     0.0031   14.6   0.1       0.44    7.6   0.0    2.4  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0034   13.8   0.0       0.29    7.5   0.0    2.2  2  TIGR00764 lon_rel: putative ATP-dependent protease
  ------ inclusion threshold ------
      0.011   11.8   1.6        2.9    3.8   0.0    3.8  4  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
      0.015   13.1   0.8        4.7    4.9   0.0    3.0  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
      0.018   12.7   1.3          3    5.5   0.0    3.4  4  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
      0.037   10.3   0.0       0.97    5.7   0.0    2.2  2  TIGR00602 rad24: checkpoint protein rad24


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  842.5   1.2  4.3e-256  6.1e-254      17     730 ..      34     763 ..      21     766 .. 0.94

  Alignments for each domain:
  == domain 1    score: 842.5 bits;  conditional E-value: 4.3e-256
   TIGR01243  17 givridrrtaeelgvepgdvveiekge.rkavaivyrsflddkgkgiirldgylrknagvaigdrvkvkrae.vkeakkvvlap...tqkirlgrdfedfvkekllg..kvlskgekvvvsvlegelklvvvsttpagivrvteatevelkeeaveeeketkvpevtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvdldklaevthgfvgadlaalakeaamaalrrllregkidleaeeipkevleelkvtkkdfkealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresv.........ksvakekleaeekeilkdl..kvkkkdflealkkvkpsvskedlrvyeklakelk 730
                  ++ + + ++e+l +  gd v +++ + r +v iv      d+    +r++  +rkn+ + + d v+v  +  v   k++ + p   t +++ g+ fe ++k  +l   +++ kg+  +v      +++ vv+t p+ +  v+  t +  + ++v+ e e k+ +v y+d+gg ++++ +ire++elpl+hp lf+ lg++pp+gvllygppg+gktl+a+avane+ga+f+ ingpeimsk  gese +lr+ f+eae+nap+iifideid+iapkre++ geve+r+v+q+ltlmdglk+r  v+vig tnrp+a+dpalrr grfdrei+igvpd +gr ei++ihtrnm l+edvd + ++  thgfvgad+aal+ eaam+++r  ++   id+e eei +e+l+ + v ++ f+ al + +ps lre +vevpnv wediggle vk++l+e v++p+ ++e fek+g+ p kgvl++gppg gktl+akava+e +anfi+v+gpe+l+ w gese ++r++f+karq+ap+++f+de+d+ia +rg + ++    +dr++nqllte+dg+  +++v +i+atnrpdi+d al+rpgrld+li++p+pd e+rl i++   r+ p+++dvdl  +a +t+ +tgad+  +++ a+ +a+re +         k+ a + +e ee++  +d    +  k+f+ a+++ + svs  dl +y  +a+ l+
  MMETSP1061-20121228|6841_1  34 SVISLSPAKMEQLELFRGDTVLVKGKKgRDTVCIVLADETCDDA--NVRMNKVVRKNLRIRLSDVVTVTACGdVPYGKRIHVLPlddTIEGVSGNLFEVYLKPYFLEayRPVKKGDLFLVRSAMHPVEFKVVETDPSPYCIVAPDTVIHCEGDPVKREDEEKMDDVGYDDVGGCRKQMSQIREMIELPLRHPTLFKTLGVKPPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKREKTNGEVERRIVSQMLTLMDGLKQRASVVVIGCTNRPNAIDPALRRFGRFDREIDIGVPDENGRLEIFRIHTRNMKLDEDVDPESVSRETHGFVGADIAALCTEAAMQCIREKMD--LIDIEDEEIDAEILDSMAVNQDHFRHALSQSNPSSLRETVVEVPNVSWEDIGGLEGVKRDLKELVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLMAKAVANECQANFISVKGPELLTMWFGESEANVRDVFEKARQSAPCVLFFDELDSIAQQRGGSSGDGggAADRVMNQLLTEMDGVGAKKNVFIIGATNRPDIIDTALMRPGRLDQLIYIPMPDFESRLSILRATLRKSPISKDVDLSYMASQTDKFTGADLTEICQTACKLAIREEIerdierqrmKAEAGDEMEDEEDDEEDDTmpEILPKHFEAAVRQARRSVSDRDLAQYASFAQTLQ 763
                 67889999*************99976525577777665554443..59********************9876599999987777222456788999********996558*******999888888************************************************************************************************************************************************************************************************************************************************************************999..9**************************************************************************************************************************************************************998876669***********************************************************************************************************9999999998888888888877666665236889**************************9876 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.1   0.8   2.1e-86   2.9e-84     113     355 ..     191     430 ..     171     437 .. 0.94
   2 !  269.7   0.0   6.1e-83   8.6e-81     111     349 ..     462     700 ..     450     712 .. 0.96

  Alignments for each domain:
  == domain 1    score: 281.1 bits;  conditional E-value: 2.1e-86
   TIGR01242 113 veerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmed 355
                  e+  +v y+d+GG  kq+ +ire +elpl++p lf+ +G++pp+GvllyGppG+Gktl+a+ava+et a f  + g e++ k  Ge  + +r+ f+ a + ap+iifideid+ia kr +  t+G+ e +r + q+l+ +dG++ r  v vi+ tnr++ +dpal r Grfdr i++ +pd++Grlei++ihtr+mkl edvd e +++ t+G++Gad+ a++tea m  ire+ d + +ed
  MMETSP1061-20121228|6841_1 191 EEKMDDVGYDDVGGCRKQMSQIREMIELPLRHPTLFKTLGVKPPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKREK--TNGEVE-RRIVSQMLTLMDGLKQRASVVVIGCTNRPNAIDPALRRFGRFDREIDIGVPDENGRLEIFRIHTRNMKLDEDVDPESVSRETHGFVGADIAALCTEAAMQCIREKMDLIDIED 430
                 344578****************************************************************************************************************965..677655.577889*****************************************************************************************************999887 PP

  == domain 2    score: 269.7 bits;  conditional E-value: 6.1e-83
   TIGR01242 111 leveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerd 349
                   v e p+vs+ediGGle   r+++e v+ p+ +pe fe+ G+ p kGvl+yGppG+Gktl+akava+e +a fi v g el+  + Ge    vr+vf+ a++ ap+++f de+d+ia +r  ss  G    +r + qll+e+dG  ++ nv +i+atnr+di+d al+rpGr+d+li +p+pd+e rl il+   rk  +++dvdl  +a  t+ ++Gadl  i+  a   airee +
  MMETSP1061-20121228|6841_1 462 ETVVEVPNVSWEDIGGLEGVKRDLKELVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLMAKAVANECQANFISVKGPELLTMWFGESEANVRDVFEKARQSAPCVLFFDELDSIAQQRGGSSGDGGGAADRVMNQLLTEMDGVGAKKNVFIIGATNRPDIIDTALMRPGRLDQLIYIPMPDFESRLSILRATLRKSPISKDVDLSYMASQTDKFTGADLTEICQTACKLAIREEIE 700
                 56899**************************************************************************************************************************************************************************************************************************************9865 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.2   0.3   1.6e-74   2.2e-72      45     289 ..     189     431 ..     178     454 .. 0.93
   2 !  251.5   0.0   2.4e-77   3.5e-75      46     290 ..     463     709 ..     438     725 .. 0.93

  Alignments for each domain:
  == domain 1    score: 242.2 bits;  conditional E-value: 1.6e-74
   TIGR01241  45 lleeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkel 289
                   ee++  v ++dv G+ ++  ++ e+++  L++p+ f+ lG k P+Gvll+GpPG+GktL+a+ava e g  ff i G + +  + G   s +r  fe+a knaP+iifiDeiD++  kr+++ g  +    + + q+L+ mDG++++  v+v+  tnrp+ +D+aL r GrfDr++ +  Pd +gr ei+++h++++kl+e+vd ++v+r+t Gf Gad+a l+ eaa+ + r++ + +++++ 
  MMETSP1061-20121228|6841_1 189 EDEEKMDDVGYDDVGGCRKQMSQIREMIELpLRHPTLFKTLGVKPPRGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKREKTNG--E-VERRIVSQMLTLMDGLKQRASVVVIGCTNRPNAIDPALRRFGRFDREIDIGVPDENGRLEIFRIHTRNMKLDEDVDPESVSRETHGFVGADIAALCTEAAMQCIREKMDLIDIEDE 431
                 45667889*********************87*******************************************************************************************9433..2.3336789****************************************************************************************************999988763 PP

  == domain 2    score: 251.5 bits;  conditional E-value: 2.4e-77
   TIGR01241  46 leeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarkn.kkevtlkele 290
                 +  e ++v+++d+ G++ +k++l+e+v++ + +p+kf+k+G    kGvl++GpPG GktL+akava e +  f+s+ G +++ m+ G   + vrD+fe+a+++aPc++f De+D++ ++rg + g+g    ++ +nqlL+emDG +++++v ++ atnrpd++D+aL+rPGr+D+ + +  Pd++ r +il+  ++k  ++++vdl+ +a +t  f+Gadl  ++  a+ la r++ ++ ++ + ++
  MMETSP1061-20121228|6841_1 463 TVVEVPNVSWEDIGGLEGVKRDLKELVQYpVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLMAKAVANECQANFISVKGPELLTMWFGESEANVRDVFEKARQSAPCVLFFDELDSIAQQRGGSSGDGGGAADRVMNQLLTEMDGVGAKKNVFIIGATNRPDIIDTALMRPGRLDQLIYIPMPDFESRLSILRATLRKSPISKDVDLSYMASQTDKFTGADLTEICQTACKLAIREEiERDIERQRMK 709
                 4445789**********************7799*********************************************************************************************************************************************************************************************************9834556666554 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.28        40     119     157 ..      21      61 ..      15      74 .. 0.78
   2 !  191.9   0.3   2.8e-59     4e-57     174     432 ..     192     438 ..     184     446 .. 0.86
   3 !  206.3   0.0   1.2e-63   1.7e-61     148     387 ..     439     665 ..     417     677 .. 0.88
   4 ?    3.3   0.2     0.041       5.8     435     491 ..     675     729 ..     663     738 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.28
   TIGR03689 119 gralvvdka.deervvklagalaee.klraGdsllvdlkag 157
                 +r++v d++ d++ v++l+ a +e+ +l  Gd++lv  k g
  MMETSP1061-20121228|6841_1  21 NRLIVDDATnDDNSVISLSPAKMEQlELFRGDTVLVKGKKG 61 
                 57888776526789*****9988876899******998766 PP

  == domain 2    score: 191.9 bits;  conditional E-value: 2.8e-59
   TIGR03689 174 eevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleedl......aeadgdreaavealiekvvdalyareeenelvevteadgstevl 432
                 e + dv+y+d+GG  +q+ qir+ +elP+ h+ l++  ++kpP+GvllyGPPG+Gktlia+avan             ++f+ i GPe+++k  Ge+e ++r  fe a    +++ P ++f+de+ds+   r      +ve  +v q+l+ +dG+++   v+viG +nr + idPa+ r Gr+d  i i+ Pd+++  +i+  +   ++ l+ed+       e++g   a+++al +++  a+ + +e+ +l++++ ++ + e+l
  MMETSP1061-20121228|6841_1 192 EKMDDVGYDDVGGCRKQMSQIREMIELPLRHPTLFKTLGVKPPRGVLLYGPPGSGKTLIARAVANET----------GAFFFLINGPEIMSKMAGESESNLRKAFEEA----EKNAPAIIFIDEIDSIAPKREK-TNGEVERRIVSQMLTLMDGLKQRASVVVIGCTNRPNAIDPALRRFGRFDREIDIGVPDENGRLEIFRIHT-RNMKLDEDVdpesvsRETHGFVGADIAALCTEA--AMQCIREKMDLIDIEDEEIDAEIL 438
                 5678************************************************************954..........469999*******************888765....5667************999976.5789*************************************************************98774.445555554111111466777778888887775..456667888888888888888877 PP

  == domain 3    score: 206.3 bits;  conditional E-value: 1.2e-63
   TIGR03689 148 dsllvdl.kaglaleavpkseveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrG..sGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleed 387
                 ds++v++ + + al + + s+ +e v+ evP+v+++diGGl+     +++ v+ P  h+e ++++++ p kGvl+yGPPGcGktl+akavan            ++ f+++kGPell  + Ge+e ++r +fe+ar+ a    P v+ffde+ds+ + rG  sG        v+ qll+e+dGv + +nv +iGa+nr d+id a++rPGrld  i i  Pd e+   il   l ++ P+++d
  MMETSP1061-20121228|6841_1 439 DSMAVNQdHFRHALSQSNPSSLRETVV-EVPNVSWEDIGGLEGVKRDLKELVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLMAKAVANE----------CQANFISVKGPELLTMWFGESEANVRDVFEKARQSA----PCVLFFDELDSIAQQRGgsSGDGGGAADRVMNQLLTEMDGVGAKKNVFIIGATNRPDIIDTALMRPGRLDQLIYIPMPDFESRLSILRATLRKS-PISKD 665
                 566665414567777777777777666.8**************************************************************95..........3568*****************************976....****************9445666668899*********************************************************99988765.66444 PP

  == domain 4    score: 3.3 bits;  conditional E-value: 0.041
   TIGR03689 435 kdlvsGamlanivdrakkaaikdeleggqkglraehllaavadevrenedl.pnttnP 491
                  d  +Ga l +i + a k ai++e+e     ++ ++++a   de++++ed   ++t P
  MMETSP1061-20121228|6841_1 675 TDKFTGADLTEICQTACKLAIREEIER---DIERQRMKAEAGDEMEDEEDDeEDDTMP 729
                 57778*******************976...4566677777777777666531344555 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   3.3e-11   4.6e-09     313     426 ..     235     344 ..     196     376 .. 0.74
   2 !   35.9   0.0   4.8e-12   6.7e-10     305     423 ..     503     619 ..     468     630 .. 0.74

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 3.3e-11
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaG.lgvlrkpevrEvsRadligeyigeseaktnelidka...LggvlFlDEayaLvekrdgakddfGleaidtLLarlEndRdrlvviiAGYek 426
                 + +ll GPPG Gkt iAr+va+     + +++ pe++        ++  gese +  +  ++a      ++F+DE+ ++  kr++++ ++   ++ ++L  ++  ++r  v++ G ++
  MMETSP1061-20121228|6841_1 235 RGVLLYGPPGSGKTLIARAVANETGAfFFLINGPEIM--------SKMAGESESNLRKAFEEAeknAPAIIFIDEIDSIAPKREKTNGEVERRIVSQMLTLMDGLKQRASVVVIGCTN 344
                 56899****************9876515677788775........5556666666666555541116789********************************9766655555555444 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 4.8e-12
   TIGR03922 305 GlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdgakddfGle...aidtLLarlEnd..RdrlvviiAG 423
                 G+     sk +l+ GPPG Gkt +A++va+         + + + v+  +l++ + gesea+  ++ +ka +    vlF+DE+ ++ ++r g++ d G +   ++++LL  ++    + ++ +i+A 
  MMETSP1061-20121228|6841_1 503 GM---SPSKGVLFYGPPGCGKTLMAKAVANEC-------QANFISVKGPELLTMWFGESEANVRDVFEKARQSapcVLFFDELDSIAQQRGGSSGDGGGAadrVMNQLLTEMDGVgaKKNVFIIGAT 619
                 54...357899******************984.......678999***********************997643339************8888777665413369*******975114444444444 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   4.7e-09   6.7e-07      33      98 ..     237     310 ..     212     359 .. 0.86
   2 !   22.4   0.0   8.1e-08   1.1e-05      32      67 ..     509     544 ..     486     581 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 4.7e-09
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpal......ekpgDlaailtaleeg..dvlfiDeihrlskave 98 
                 vllyGPPG Gkt +a+ +a+e g+   +++gp++      e +++l  ++ + e++   ++fiDei  ++++ e
  MMETSP1061-20121228|6841_1 237 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEImskmagESESNLRKAFEEAEKNapAIIFIDEIDSIAPKRE 310
                 8*******************************984333333456788888776665336********9998765 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 8.1e-08
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpale 67 
                  vl+yGPPG Gkt +ak +a+e +++   ++gp+l 
  MMETSP1061-20121228|6841_1 509 GVLFYGPPGCGKTLMAKAVANECQANFISVKGPELL 544
                 58*******************************984 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   9.9e-06    0.0014      34      63 ..     228     257 ..     213     260 .. 0.87
   2 ?    3.7   0.0     0.036       5.1     122     177 ..     287     347 ..     272     354 .. 0.70
   3 ?   -3.8   0.0       6.9   9.7e+02     255     287 ..     435     467 ..     403     469 .. 0.74
   4 !   14.4   0.0     2e-05    0.0028      39      67 ..     506     534 ..     500     546 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 9.9e-06
   TIGR02928  34 ilrgsrpsnvliyGktGtGKtavtkkvlke 63 
                 +l  + p+ vl+yG++G+GKt+++++v +e
  MMETSP1061-20121228|6841_1 228 TLGVKPPRGVLLYGPPGSGKTLIARAVANE 257
                 566678999*****************9987 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.036
   TIGR02928 122 keleeredsliivLDEiDklv.kkeade......lLyeLsraeengdlekakvsvigisndlk 177
                 +e  e++  +ii +DEiD++  k+e+ +      ++ +++ + +  + + a+v vig +n  +
  MMETSP1061-20121228|6841_1 287 EEA-EKNAPAIIFIDEIDSIApKREKTNgeverrIVSQMLTLMDGLKQR-ASVVVIGCTNRPN 347
                 444.4455678889******97555544678888777877775555555.8999999998766 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 6.9
   TIGR02928 255 AeeegsekvteehvekAqekiekerllelirgl 287
                 Ae  +s  v ++h ++A ++ + + l e++ ++
  MMETSP1061-20121228|6841_1 435 AEILDSMAVNQDHFRHALSQSNPSSLRETVVEV 467
                 444567778888888888888888888877665 PP

  == domain 4    score: 14.4 bits;  conditional E-value: 2e-05
   TIGR02928  39 rpsnvliyGktGtGKtavtkkvlkeleea 67 
                  ++ vl yG++G+GKt+++k+v +e +++
  MMETSP1061-20121228|6841_1 506 PSKGVLFYGPPGCGKTLMAKAVANECQAN 534
                 34579*******************99875 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   9.4e-08   1.3e-05     120     201 ..     237     312 ..     233     330 .. 0.80
   2 !   10.8   0.0   0.00026     0.037     120     202 ..     510     586 ..     492     611 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 9.4e-08
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksena 201
                 +ll Gp GsGktl+a+++a+e    f + +   +  +   Ge   n l k    a  + ek    ii+ideid ia k e++
  MMETSP1061-20121228|6841_1 237 VLLYGPPGSGKTLIARAVANETGAFFFLINGPEIM-SKMAGESESN-LRK----AFEEAEKNAPAIIFIDEIDSIAPKREKT 312
                 799*******************9999988887775.4567887666.455....55566777889***********988754 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00026
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksenas 202
                 +l+ Gp G Gktl+a+++a+e +  f       l    + Ge   n+   ++++a    +++   +++ de+d ia++  ++s
  MMETSP1061-20121228|6841_1 510 VLFYGPPGCGKTLMAKAVANECQANFISVKGPELLT-MWFGESEANV-RDVFEKA----RQSAPCVLFFDELDSIAQQRGGSS 586
                 7889******************99987666666543.4678876665.4444444....445567889999999988876666 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0012      0.16      46     127 ..     238     315 ..     229     359 .. 0.78
   2 !   22.3   0.0   8.6e-08   1.2e-05       8     241 ..     475     709 ..     470     721 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0012
   TIGR02881  46 ifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslarGGekdfGk 127
                 ++ G PG+Gkt +ar +a+    +  l  G  i  +   + Ge      +k+ e  +k    ++fide  s+a   ek  G 
  MMETSP1061-20121228|6841_1 238 LLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSK---MAGESES-NLRKAFEEAEKNAPAIIFIDEIDSIAPKREKTNGE 315
                 67799**************99999999999988654...5688654.457788888899999**********9999998774 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 8.6e-08
   TIGR02881   8 lvGleevkelikeiyalilin.ekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikka...lGGvlfideaysla..rGGekdfGkeaidtlvke....med..kreelvlilaGys.demdyflslnPGlksrfpisldfpdytveelleiakkmve....ereyklteeakaklreklakvksasekefsnarlvrnliekairrqavr 241
                 + Gle vk+ +ke+  + + + ek ++ g+  +k v   +f G PG Gkt +a+ +a+         + ++i v+  +l+  + G++  ++r+v +ka      vlf de  s+a  rGG    G  a d ++++    m+    ++++ +i a  + d +d  l + PG   ++ i + +pd++    l+i++  +      ++  l+  a++   +k++  + ++  +++   ++r+ ie+ i rq ++
  MMETSP1061-20121228|6841_1 475 IGGLEGVKRDLKELVQYPVEHpEKFEKFGMSPSKGV---LFYGPPGCGKTLMAKAVANEC-------QANFISVKGPELLTMWFGESEANVRDVFEKArqsAPCVLFFDELDSIAqqRGGSSGDGGGAADRVMNQllteMDGvgAKKNVFIIGATNRpDIIDTAL-MRPGRLDQL-IYIPMPDFES--RLSILRATLRkspiSKDVDLSYMASQ--TDKFTGADLTEICQTACKLAIREEIERDIERQRMK 709
                 559999*******99987655144555677776665...79*************999755.......46788888899**************998877211568******99987669**999898888876654111154322233444444443303334433.456644333.5555566543..33333333320111344444444443..34455555555556666666777777777776665 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0095       1.3      47      77 ..     234     264 ..     229     272 .. 0.88
   2 !   13.2   0.1   4.9e-05     0.007     238     285 ..     282     330 ..     268     340 .. 0.78
   3 !    7.2   0.0    0.0032      0.45      48     102 ..     508     560 ..     501     565 .. 0.80
   4 ?    1.1   0.0      0.23        32     248     269 ..     567     588 ..     550     610 .. 0.74

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0095
   TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfik 77 
                 P+ +l+ G+ G Gkt iar +a  ++a f  
  MMETSP1061-20121228|6841_1 234 PRGVLLYGPPGSGKTLIARAVANETGAFFFL 264
                 8899******************988887765 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 4.9e-05
   TIGR00390 238 kqeavdrvees..GiifideidkiakkgessgadvsreGvqrdllPiveG 285
                  ++a +++e++   iifideid ia k e+++ +v r  v   +l +++G
  MMETSP1061-20121228|6841_1 282 LRKAFEEAEKNapAIIFIDEIDSIAPKREKTNGEVERRIVS-QMLTLMDG 330
                 46788888887336********************9998775.46677766 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0032
   TIGR00390  48 knilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvd 102
                 k +l  G+ G Gkt +a+ +a   +a fi v       + + G + e+ vrd+ +
  MMETSP1061-20121228|6841_1 508 KGVLFYGPPGCGKTLMAKAVANECQANFISVKGPELLTMWF-G-ESEANVRDVFE 560
                 7899**************************98877665544.2.44555666655 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.23
   TIGR00390 248 sGiifideidkiakkgessgad 269
                   ++f de+d ia++   s+ d
  MMETSP1061-20121228|6841_1 567 PCVLFFDELDSIAQQRGGSSGD 588
                 4699*********998777666 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00017     0.024      22      57 ..     235     270 ..     229     288 .. 0.85
   2 !   13.1   0.0   7.4e-05     0.011      23      58 ..     509     544 ..     497     554 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00017
   TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvllnGdae 57 
                 + v l GP G+Gkt +a++va++ +    l+nG + 
  MMETSP1061-20121228|6841_1 235 RGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEI 270
                 568899*******************99999999764 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 7.4e-05
   TIGR02640  23 pvhlrGPaGtGktslalhvakkrdrPvvllnGdael 58 
                  v + GP G+Gkt +a +va++ +   + ++G + l
  MMETSP1061-20121228|6841_1 509 GVLFYGPPGCGKTLMAKAVANECQANFISVKGPELL 544
                 6889******************99999999997655 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.1   0.00014     0.019     357     383 ..     238     264 ..     232     315 .. 0.86
   2 !   12.7   0.0   4.7e-05    0.0067     355     383 ..     509     537 ..     477     540 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
   TIGR00763 357 clvGPPGVGKtSlaksiAkalnrkfvr 383
                  l+GPPG GKt +a+++A+ ++  f+ 
  MMETSP1061-20121228|6841_1 238 LLYGPPGSGKTLIARAVANETGAFFFL 264
                 69****************999888875 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 4.7e-05
   TIGR00763 355 ilclvGPPGVGKtSlaksiAkalnrkfvr 383
                  + ++GPPG GKt +ak++A+  + +f+ 
  MMETSP1061-20121228|6841_1 509 GVLFYGPPGCGKTLMAKAVANECQANFIS 537
                 578******************99999975 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.013       1.9     486     516 ..     233     263 ..     228     275 .. 0.78
   2 !    9.6   0.1   0.00036     0.051     257     302 ..     273     318 ..     263     382 .. 0.70
   3 !    7.2   0.0    0.0019      0.27     485     516 ..     505     536 ..     499     543 .. 0.87
   4 ?    0.7   0.0      0.18        25     257     297 ..     546     588 ..     542     620 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.013
   TIGR02639 486 PvgsflfvGptGvGktelakqLaeelgvell 516
                 P    l +Gp G Gkt +a+++a+e g  + 
  MMETSP1061-20121228|6841_1 233 PPRGVLLYGPPGSGKTLIARAVANETGAFFF 263
                 55556788****************9987665 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00036
   TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivgagatsggslda 302
                 k  G+ e  l++  ee ek+  ai+fiDei  i      ++g+++ 
  MMETSP1061-20121228|6841_1 273 KMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAPKREKTNGEVER 318
                 7789*****************************9888888887773 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0019
   TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvell 516
                 +P    lf+Gp G Gkt +ak++a+e   +++
  MMETSP1061-20121228|6841_1 505 SPSKGVLFYGPPGCGKTLMAKAVANECQANFI 536
                 577889******************99887775 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.18
   TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivga..gatsg 297
                  + G+ e+ +++v e+ +++   +lf De+  i     g++++
  MMETSP1061-20121228|6841_1 546 MWFGESEANVRDVFEKARQSAPCVLFFDELDSIAQQrgGSSGD 588
                 577999**************************98641133333 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.9e-05    0.0055     140     291 ..     237     393 ..     231     482 .. 0.71
   2 !    6.4   0.0     0.006      0.85     139     164 ..     509     534 ..     500     540 .. 0.86
   3 ?    0.9   0.0      0.29        40     265     301 ..     640     675 ..     637     732 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.9e-05
   TIGR00362 140 lfiyGgvGlGKTHLlqAigneilkknpnakvvYvsaekFvndfvkalrekkieefkekyrsvD.lLLiDDiqflagke.........ktqeeffhtfnalleknkqivltsDrapkelegleeRLkSRfewGLvvdieppdletrlaILkkkaeeeklelp...e 291
                 +++yG  G GKT + +A++ne+ +       + ++  + ++++    +++  ++f+e  +++  ++ iD i  +a k+         ++  +++ +++ l ++   +v+ + + p+ ++    R+  Rf+    +di  pd + rl+I++  ++++kl+ +   e
  MMETSP1061-20121228|6841_1 237 VLLYGPPGSGKTLIARAVANETGAF-----FFLINGPEIMSKMAGESESNLRKAFEEAEKNAPaIIFIDEIDSIAPKRektngeverRIVSQMLTLMDGLKQRASVVVIGCTNRPNAIDPALRRF-GRFDR--EIDIGVPDENGRLEIFRIHTRNMKLDEDvdpE 393
                 689****************977655.....799*************************9998615679******98753222212222334577888899999999*************877775.79998..579999**********9888877776554443 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.006
   TIGR00362 139 PlfiyGgvGlGKTHLlqAigneilkk 164
                  +++yG  G GKT + +A++ne+ ++
  MMETSP1061-20121228|6841_1 509 GVLFYGPPGCGKTLMAKAVANECQAN 534
                 5789*****************98876 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.29
   TIGR00362 265 dieppdletrlaILkkkaeeeklelpeevlefiakki 301
                  i  pd+e+rl+IL+  ++++ ++ + + l+++a++ 
  MMETSP1061-20121228|6841_1 640 YIPMPDFESRLSILRATLRKSPISKDVD-LSYMASQT 675
                 5789************999988876655.45666655 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00028      0.04       4      26 ..     238     260 ..     236     326 .. 0.71
   2 !    9.6   0.0    0.0013      0.18       6      30 ..     513     537 ..     509     541 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00028
   TIGR02173   4 visGpPGsGkttvakilaeklsl 26 
                  + GpPGsGkt +a+ +a++ + 
  MMETSP1061-20121228|6841_1 238 LLYGPPGSGKTLIARAVANETGA 260
                 567***************99874 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0013
   TIGR02173   6 sGpPGsGkttvakilaeklslklis 30 
                  GpPG Gkt +ak +a++ + ++is
  MMETSP1061-20121228|6841_1 513 YGPPGCGKTLMAKAVANECQANFIS 537
                 69*****************999998 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.1e-05      0.01     173     198 ..     232     257 ..     213     261 .. 0.85
   2 ?   -3.0   0.0       2.8   3.9e+02     322     342 ..     335     354 ..     332     356 .. 0.84
   3 !    7.2   0.0    0.0024      0.34     176     199 ..     508     531 ..     494     538 .. 0.86
   4 ?   -1.1   0.0      0.75   1.1e+02      75     100 ..     684     709 ..     607     720 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.1e-05
   TIGR02903 173 pfpqhiilyGppGvGkttaarlalee 198
                   p+ ++lyGppG Gkt +ar + +e
  MMETSP1061-20121228|6841_1 232 KPPRGVLLYGPPGSGKTLIARAVANE 257
                 55899****************98776 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.8
   TIGR02903 322 adfvliGattrdpeeinpalr 342
                 a  v+iG t r p+ i+palr
  MMETSP1061-20121228|6841_1 335 ASVVVIGCTNR-PNAIDPALR 354
                 67899998765.9*******9 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0024
   TIGR02903 176 qhiilyGppGvGkttaarlaleea 199
                 + +++yGppG Gkt +a+ + +e+
  MMETSP1061-20121228|6841_1 508 KGVLFYGPPGCGKTLMAKAVANEC 531
                 5699*************9988776 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 0.75
   TIGR02903  75 daiadilakrtveeeierkvekklve 100
                   i++ + k  ++eeier++e++ ++
  MMETSP1061-20121228|6841_1 684 TEICQTACKLAIREEIERDIERQRMK 709
                 34778888999999999999876443 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0012      0.17       2      24 ..     237     259 ..     236     281 .. 0.90
   2 !   11.9   0.0   0.00019     0.027       2      29 ..     510     537 ..     509     541 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0012
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklg 24 
                 ++l GpPGsGK  +a+ +a+++g
  MMETSP1061-20121228|6841_1 237 VLLYGPPGSGKTLIARAVANETG 259
                 6899***************9987 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 0.00019
   TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhis 29 
                 +++ GpPG+GK  +ak +a++++   is
  MMETSP1061-20121228|6841_1 510 VLFYGPPGCGKTLMAKAVANECQANFIS 537
                 789********************99998 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1    0.0002     0.029      85     109 ..     233     257 ..     223     261 .. 0.85
   2 !    8.8   0.0   0.00085      0.12      87     115 ..     508     536 ..     501     544 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.0002
   TIGR02902  85 npqhviiyGppGvGktaaarlvlee 109
                  p+ v++yGppG Gkt  ar v +e
  MMETSP1061-20121228|6841_1 233 PPRGVLLYGPPGSGKTLIARAVANE 257
                 5899****************99876 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00085
   TIGR02902  87 qhviiyGppGvGktaaarlvleeakksaa 115
                 + v+ yGppG Gkt  a+ v +e + +  
  MMETSP1061-20121228|6841_1 508 KGVLFYGPPGCGKTLMAKAVANECQANFI 536
                 45999**************9999887655 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0062      0.87      14      37 ..     234     257 ..     227     262 .. 0.89
   2 ?    1.4   0.0      0.32        45     106     141 ..     272     307 ..     260     308 .. 0.86
   3 !   10.0   0.0   0.00074       0.1      15      39 ..     508     532 ..     503     541 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0062
   TIGR00678  14 ahAlLfaGpeGvGkealaealaka 37 
                 +  +L++Gp+G+Gk+ +a+a+a++
  MMETSP1061-20121228|6841_1 234 PRGVLLYGPPGSGKTLIARAVANE 257
                 6789*****************976 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.32
   TIGR00678 106 ealneaaaNaLLKtLEEPpektlflLisespekllp 141
                 +++  +++  L K +EE+++++ +++  ++ +++ p
  MMETSP1061-20121228|6841_1 272 SKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSIAP 307
                 5788899999************99999999888875 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00074
   TIGR00678  15 hAlLfaGpeGvGkealaealakall 39 
                 + +Lf+Gp+G+Gk+ +a+a+a++  
  MMETSP1061-20121228|6841_1 508 KGVLFYGPPGCGKTLMAKAVANECQ 532
                 679*****************98754 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0038      0.54       2      29 ..     238     267 ..     237     277 .. 0.79
   2 !   10.8   0.0   0.00047     0.066       3      28 ..     512     537 ..     510     545 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0038
   TIGR01313   2 vlmGvaGsGkstiakelakklgakf..ieG 29 
                 +l G+ GsGk+ ia+++a++ ga f  i+G
  MMETSP1061-20121228|6841_1 238 LLYGPPGSGKTLIARAVANETGAFFflING 267
                 578*****************9965422565 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00047
   TIGR01313   3 lmGvaGsGkstiakelakklgakfie 28 
                   G+ G+Gk+ +ak++a++ +a+fi 
  MMETSP1061-20121228|6841_1 512 FYGPPGCGKTLMAKAVANECQANFIS 537
                 56999*****************9984 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0    0.0013      0.18      36     108 ..     232     311 ..     223     353 .. 0.73
   2 !    9.1   0.0    0.0013      0.18      40     106 ..     509     582 ..     494     585 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0013
   TIGR03420  36 kaerllylwGesgsGksHLLqAacaaaee.....agksaiylplkelaqllvevlegleq..aelvalDdvealagerew 108
                 k  r + l+G++gsGk+ + +A+++++ +     +g +++   + e ++ l +++e++e+   +++ +D+++++a +re+
  MMETSP1061-20121228|6841_1 232 KPPRGVLLYGPPGSGKTLIARAVANETGAfffliNGPEIMSKMAGESESNLRKAFEEAEKnaPAIIFIDEIDSIAPKREK 311
                 5567789****************998754222214444444333444444447776665411467889999999988854 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0013
   TIGR03420  40 llylwGesgsGksHLLqAacaaaeea.....gksaiylplkelaqllvevlegleqae..lvalDdvealager 106
                  + ++G++g+Gk+ + +A++++++++     g + + + + e +    +v+e+++q +  ++ +D+++++a++r
  MMETSP1061-20121228|6841_1 509 GVLFYGPPGCGKTLMAKAVANECQANfisvkGPELLTMWFGESEANVRDVFEKARQSApcVLFFDELDSIAQQR 582
                 57899****************99876111113344455555554444577777665442244567777777765 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0     0.001      0.14     214     231 ..     237     254 ..     231     259 .. 0.89
   2 !    8.2   0.0    0.0012      0.18     213     231 ..     509     527 ..     482     531 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.001
   TIGR00368 214 llllGPPGsGktllakrl 231
                 +ll GPPGsGktl+a+ +
  MMETSP1061-20121228|6841_1 237 VLLYGPPGSGKTLIARAV 254
                 799***********9976 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0012
   TIGR00368 213 nllllGPPGsGktllakrl 231
                  +l+ GPPG Gktl+ak +
  MMETSP1061-20121228|6841_1 509 GVLFYGPPGCGKTLMAKAV 527
                 689*************986 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.29        41     594     617 ..     233     256 ..     230     264 .. 0.81
   2 ?    2.0   0.0     0.077        11     244     279 ..     272     306 ..     263     344 .. 0.82
   3 ?    4.5   0.0     0.013       1.8     594     617 ..     506     529 ..     503     535 .. 0.89
   4 ?    1.7   0.0     0.095        13     248     352 ..     549     660 ..     545     673 .. 0.67

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.29
   TIGR03346 594 PigsflflGptGvGktelakalae 617
                 P    l+ Gp G Gkt +a+a+a+
  MMETSP1061-20121228|6841_1 233 PPRGVLLYGPPGSGKTLIARAVAN 256
                 445567789999999999999996 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.077
   TIGR03346 244 akyrGefeerlkavlkevekseGeiilfidelhtlv 279
                 +k  Ge e  l+  ++e ek+    i+fide+  + 
  MMETSP1061-20121228|6841_1 272 SKMAGESESNLRKAFEEAEKNA-PAIIFIDEIDSIA 306
                 6899*************98876.6678*****9886 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.013
   TIGR03346 594 PigsflflGptGvGktelakalae 617
                 P    lf Gp G Gkt +aka+a+
  MMETSP1061-20121228|6841_1 506 PSKGVLFYGPPGCGKTLMAKAVAN 529
                 77789*****************97 PP

  == domain 4    score: 1.7 bits;  conditional E-value: 0.095
   TIGR03346 248 GefeerlkavlkevekseGeiilfidelhtlv...G..aGkaeGalda..gnllkPal...arGelhciGattldeyrkyiekdaaler..rf.qkvlvdePsvedtisilrGlkery 352
                 Ge e  ++ v+++ ++s    +lf del  +    G  +G + Ga d    +ll  +    a+ ++ +iGat   +    i  d+al r  r+ q +++  P+ e+ +silr    + 
  MMETSP1061-20121228|6841_1 549 GESEANVRDVFEKARQSA-PCVLFFDELDSIAqqrGgsSGDGGGAADRvmNQLLTEMDgvgAKKNVFIIGATNRPD----I-IDTALMRpgRLdQLIYIPMPDFESRLSILRATLRKS 660
                 888889999998877665.7899******99755532246666777742245665543222677788889986443....3.477887644443778999999999999999766555 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0      0.03       4.2      39      58 ..     237     256 ..     230     258 .. 0.89
   2 !    7.6   0.0    0.0031      0.44      38      58 ..     509     529 ..     505     537 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.03
   TIGR02397  39 yLfsGprGvGKTsiArilAk 58 
                  L++Gp G GKT iAr +A+
  MMETSP1061-20121228|6841_1 237 VLLYGPPGSGKTLIARAVAN 256
                 699*************9985 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0031
   TIGR02397  38 ayLfsGprGvGKTsiArilAk 58 
                   Lf+Gp G+GKT +A+ +A+
  MMETSP1061-20121228|6841_1 509 GVLFYGPPGCGKTLMAKAVAN 529
                 579**************9986 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0     0.002      0.29      34      59 ..     231     256 ..     226     264 .. 0.89
   2 ?    3.9   0.0     0.024       3.5      38      59 ..     508     529 ..     497     537 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.002
   TIGR00764  34 akqkrnvlliGePGvGksmlakamae 59 
                 +k  r vll G PG Gk+++a+a+a+
  MMETSP1061-20121228|6841_1 231 VKPPRGVLLYGPPGSGKTLIARAVAN 256
                 566799******************96 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.024
   TIGR00764  38 rnvlliGePGvGksmlakamae 59 
                 + vl+ G PG Gk+++aka+a+
  MMETSP1061-20121228|6841_1 508 KGVLFYGPPGCGKTLMAKAVAN 529
                 6799****************96 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.13        18     594     619 ..     233     257 ..     201     262 .. 0.85
   2 ?    3.8   0.0     0.021       2.9     260     291 ..     274     304 ..     270     308 .. 0.87
   3 ?   -0.8   0.0       0.5        71     598     619 ..     509     530 ..     503     533 .. 0.84
   4 ?    2.0   0.0     0.074        11     262     302 ..     549     589 ..     546     601 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.13
   TIGR03345 594 kPlgvFllvGpsGvGktetalalAel 619
                  P gv ll Gp G Gkt  a a+A++
  MMETSP1061-20121228|6841_1 233 PPRGV-LLYGPPGSGKTLIARAVANE 257
                 46666.789*************9985 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.021
   TIGR03345 260 vkGeFekRlksvidevkasekpiilFiDeaHt 291
                 + Ge e+ l++  +e+++ ++p i+FiDe+ +
  MMETSP1061-20121228|6841_1 274 MAGESESNLRKAFEEAEK-NAPAIIFIDEIDS 304
                 88*************987.579999****975 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.5
   TIGR03345 598 vFllvGpsGvGktetalalAel 619
                   l+ Gp G Gkt  a a+A++
  MMETSP1061-20121228|6841_1 509 GVLFYGPPGCGKTLMAKAVANE 530
                 45899**************986 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.074
   TIGR03345 262 GeFekRlksvidevkasekpiilFiDeaHtliG.aGgqaGqg 302
                 Ge e+ +++v +++++s +p +lF De  ++    Gg++G g
  MMETSP1061-20121228|6841_1 549 GESEANVRDVFEKARQS-APCVLFFDELDSIAQqRGGSSGDG 589
                 999**********9998.5999*****999874247777765 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.033       4.7     177     212 ..     212     248 ..     199     252 .. 0.69
   2 ?    4.8   0.0     0.036       5.1     189     212 ..     498     521 ..     412     531 .. 0.74
   3 ?   -1.4   0.5       2.9   4.1e+02      62     122 ..     707     767 ..     672     776 .. 0.51

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.033
   TIGR03499 177 lreaLekklsvkkeedei.lekggviaLvGptGvGKT 212
                 +re++e  l++ +  +++  + ++ ++L Gp+G+GKT
  MMETSP1061-20121228|6841_1 212 IREMIELPLRHPTLFKTLgVKPPRGVLLYGPPGSGKT 248
                 55555555555444333314556789**********9 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.036
   TIGR03499 189 keedeilekggviaLvGptGvGKT 212
                 k+e+  ++  + +++ Gp+G GKT
  MMETSP1061-20121228|6841_1 498 KFEKFGMSPSKGVLFYGPPGCGKT 521
                 4455556667889**********9 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 2.9
   TIGR03499  62 eeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalke 122
                 + ++++  + e+e++++++ + +e  +k+ e + ++a +++++++ ++ +++ + l++ ++
  MMETSP1061-20121228|6841_1 707 RMKAEAGDEMEDEEDDEEDDTMPEILPKHFEAAVRQARRSVSDRDLAQYASFAQTLQQSRA 767
                 2222222222222333333334444445455555555555555544444555555555555 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.021         3      17      36 ..     239     258 ..     232     265 .. 0.85
   2 ?   -1.0   0.0       2.1     3e+02      89     133 ..     285     328 ..     273     345 .. 0.52
   3 ?   -2.3   0.0         5   7.1e+02      32     117 ..     414     455 ..     397     467 .. 0.49
   4 ?    3.4   0.0     0.093        13      17      39 ..     512     534 ..     507     540 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.021
   TIGR02237  17 iyGpggsGKtnialilavea 36 
                 +yGp+gsGKt ia  +a e+
  MMETSP1061-20121228|6841_1 239 LYGPPGSGKTLIARAVANET 258
                 7**********998887665 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 2.1
   TIGR02237  89 askliekekadlvvvDsltalyRleksddrislklelarqlslLl 133
                 a++ +ek+   ++ +D + ++   ++++ + ++++ + +q+ +L+
  MMETSP1061-20121228|6841_1 285 AFEEAEKNAPAIIFIDEIDSIAP-KREKTNGEVERRIVSQMLTLM 328
                 55555555555666666655533.233333455666666655544 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 5
   TIGR02237  32 laveaaekgkkvvyiDtEGlsleRlkqiaedrfekvlsklivfevfdldeqekaiqkaskliekekadlvvvDslt...alyRleksdd 117
                 +a++ +++    + i+ E                                               ++d  ++Ds++   +++R + s+ 
  MMETSP1061-20121228|6841_1 414 AAMQCIREKMDLIDIEDE-----------------------------------------------EIDAEILDSMAvnqDHFRHALSQS 455
                 444444444444444444...............................................455555555432223455444444 PP

  == domain 4    score: 3.4 bits;  conditional E-value: 0.093
   TIGR02237  17 iyGpggsGKtnialilaveaaek 39 
                 +yGp+g GKt +a  +a e +++
  MMETSP1061-20121228|6841_1 512 FYGPPGCGKTLMAKAVANECQAN 534
                 7*********9987777666554 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.081        11     104     135 ..     228     259 ..     224     282 .. 0.87
   2 ?    5.7   0.0    0.0068      0.97     113     137 ..     510     534 ..     501     580 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.081
   TIGR00602 104 vLeskkkriLLitGPsGCgKsTvikiLsKelg 135
                  L +k+ r  L+ GP+G gK+ + +  + e g
  MMETSP1061-20121228|6841_1 228 TLGVKPPRGVLLYGPPGSGKTLIARAVANETG 259
                 577888898899*********99998888876 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0068
   TIGR00602 113 LLitGPsGCgKsTvikiLsKelgik 137
                  L  GP+GCgK+   k  + e   +
  MMETSP1061-20121228|6841_1 510 VLFYGPPGCGKTLMAKAVANECQAN 534
                 6889********9999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       282  (0.068747); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        52  (0.0126767); expected 4.1 (0.001)
Passed Fwd filter:                        29  (0.00706972); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.86u 0.16s 00:00:01.02 Elapsed: 00:00:00.65
# Mc/sec: 1732.10
//
Query:       MMETSP1061-20121228|6843_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-83  276.7   0.5    1.5e-81  272.0   0.3    2.0  1  TIGR00655 PurU: formyltetrahydrofolate deformylase
    8.9e-29   98.2   0.0    2.1e-28   97.0   0.0    1.5  1  TIGR00639 PurN: phosphoribosylglycinamide formyltransferase
    8.3e-17   59.1   0.0    1.1e-16   58.7   0.0    1.3  1  TIGR00460 fmt: methionyl-tRNA formyltransferase


Domain annotation for each model (and alignments):
>> TIGR00655  PurU: formyltetrahydrofolate deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.0   0.3   1.1e-84   1.5e-81      81     280 .]      23     239 ..       4     239 .. 0.85

  Alignments for each domain:
  == domain 1    score: 272.0 bits;  conditional E-value: 1.1e-84
   TIGR00655  81 adklkrvvilvskeehClldlllrvrsGeLeveialvisnheelrelvekfdipfhlvpaeketrve..................aekkelellkelevdlvvLakymriLspdfvkrye.nkiinihhsfLPafiGakPyqrayerGvkiiGatahyvteeLdeGPiieqdvvrvdhkdsvedliraGrdvekvvLaravklvledrvlvyenktvvf 280
                  d+ k++ ilvsk +hCl +lllr +  eL+++i++visnhe+lr ++e+f++pfh+ p+ k                       +e ++lellk  +vd+v+La+ym+iLsp+f+++++   iinihhsfLPafiG  Py++a+erGvk+iGatahy+t+eLd+GPiieqdv  v+h+dsv++l+r+Gr +e++vL ra++ +l+dr++v+ n+ vvf
  MMETSP1061-20121228|6843_1  23 RDRRKKLGILVSKYDHCLWELLLRHKARELDADIQVVISNHETLRPVAETFGVPFHVTPISKTVPKTvesseendatttnsslppHESRQLELLK--DVDVVILARYMQILSPEFLHHFPpDGIINIHHSFLPAFIGGSPYHQAHERGVKLIGATAHYATQELDDGPIIEQDVTIVSHRDSVKQLMRKGRVLERNVLLRAIEAHLDDRIIVHGNRCVVF 239
                 57789***************************************************988776543220010011111112222224555566665..8*********************7256***********************************************************************************************8 PP

>> TIGR00639  PurN: phosphoribosylglycinamide formyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.0   1.5e-31   2.1e-28       1     190 [.      27     230 ..      27     232 .. 0.86

  Alignments for each domain:
  == domain 1    score: 97.0 bits;  conditional E-value: 1.5e-31
   TIGR00639   1 akivvliSGsGsnlqalidalkeekidakvvlvisdkkkayglerakdaniptkvlsl.kdyes.............reefdeelaeelk.eeevdlivlAGfmrilgstflsafagk.ilNiHPsLlpafpGlhaveqAleagvkeaGctVHyvdeevDtGpiivqakvpilpedteetleqRikkaEhkllpeaiaklaqqrlk 190
                 +k+++l+S     l  l+ + k +++da++++vis+++       a+ +++p +v    k  ++             ++++  +  ++l+  ++vd+++lA +m+il+++fl++f    i+NiH s lpaf G   ++qA e gvk  G+t Hy+++e+D Gpii q +  + + d+  +l  + ++ E+++l +ai++ +++r+ 
  MMETSP1061-20121228|6843_1  27 KKLGILVSKYDHCLWELLLRHKARELDADIQVVISNHETL--RPVAETFGVPFHVTPIsKTVPKtvesseendatttNSSLPPHESRQLElLKDVDVVILARYMQILSPEFLHHFPPDgIINIHHSFLPAFIGGSPYHQAHERGVKLIGATAHYATQELDDGPIIEQDVTIVSHRDSVKQLMRKGRVLERNVLLRAIEAHLDDRII 230
                 5899999999999*9*********************9655..4568999999988754133444667777777666655555444555542578*********************9888**********************************************999998999************************99999876 PP

>> TIGR00460  fmt: methionyl-tRNA formyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   7.9e-20   1.1e-16      80     183 ..     107     223 ..      44     232 .. 0.83

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 7.9e-20
   TIGR00460  80 p............dvivvvsfGkllpkelldlf.plgviNvHpSlLPryrGaAPiqraileGdtktgvtimqlkeelDaGdilkqeevaieeednskeLsdklselgaqlLietlke 183
                 p            dv++ + + ++l+ e+l+ f p g+iN+H S LP + G++P ++a   G +  g t  +  +elD G+i++q    +++ d +k+L+ k   l  ++L+ +++ 
  MMETSP1061-20121228|6843_1 107 PhesrqlellkdvDVVILARYMQILSPEFLHHFpPDGIINIHHSFLPAFIGGSPYHQAHERGVKLIGATAHYATQELDDGPIIEQDVTIVSHRDSVKQLMRKGRVLERNVLLRAIEA 223
                 1333333446667*****************987268*****************************************************************9998888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1325.39
//
Query:       MMETSP1061-20121228|6846_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 2620.37
//
Query:       MMETSP1061-20121228|6847_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.21
# Mc/sec: 2218.67
//
Query:       MMETSP1061-20121228|6845_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.24
# Mc/sec: 2667.28
//
Query:       MMETSP1061-20121228|6844_1  [L=1118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.15s 00:00:00.68 Elapsed: 00:00:00.47
# Mc/sec: 3139.66
//
Query:       MMETSP1061-20121228|6848_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   20.2   2.5      0.007   14.5   0.1    2.2  2  TIGR04165 methano_modCys: Cys-rich peptide, TIGR04165 family
    0.00018   19.4   1.7    0.00037   18.4   1.2    1.5  1  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
  ------ inclusion threshold ------
      0.063   11.9   1.7        2.1    7.0   0.1    2.1  2  TIGR01384 TFS_arch: transcription factor S
       0.13   10.5   2.0        3.7    5.8   0.2    2.3  2  TIGR00280 L37a: ribosomal protein L37a
       0.18   10.1   3.1       0.13   10.5   0.3    1.9  2  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR04165  methano_modCys: Cys-rich peptide, TIGR04165 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   8.6e-06     0.007      29      47 ..      51      69 ..      41      71 .. 0.84
   2 !    5.9   0.2    0.0039       3.2       5      15 ..      80      90 ..      77     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8.6e-06
   TIGR04165 29 kaeaevgeikCskCGyvFe 47
                k+ ++ g  +C +CGyvF 
  MMETSP1061-20121228|6848_1 51 KDDGSPGDYVCKDCGYVFT 69
                566788999*********6 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0039
   TIGR04165  5 eLlkkCPkCGs 15
                + + kCP CG 
  MMETSP1061-20121228|6848_1 80 DSKYKCPPCGA 90
                56789*****6 PP

>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.2   4.5e-07   0.00037       5      38 ..      58      94 ..      58     101 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.5e-07
   TIGR02605  5 eYrCtaCghefevlqkmsd...dplasCPeCgseele 38
                +Y C++Cg  f++  k      d++ +CP Cg+ +++
  MMETSP1061-20121228|6848_1 58 DYVCKDCGYVFTKGPKAWAaldDSKYKCPPCGAPKFR 94
                8**********9865544335579********98765 PP

>> TIGR01384  TFS_arch: transcription factor S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1    0.0025       2.1      14      30 ..      56      72 ..      47      77 .. 0.79
   2 ?    3.5   0.1     0.031        26      60      72 ..      81      93 ..      73     107 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0025
   TIGR01384 14 eGkykctkcGyekekkk 30
                 G y+c+ cGy   k++
  MMETSP1061-20121228|6848_1 56 PGDYVCKDCGYVFTKGP 72
                58999*99**9766655 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.031
   TIGR01384 60 tkiecpkcknkey 72
                +k +cp c+  ++
  MMETSP1061-20121228|6848_1 81 SKYKCPPCGAPKF 93
                4555665555554 PP

>> TIGR00280  L37a: ribosomal protein L37a
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.012       9.7      51      67 ..      55      71 ..      48      79 .. 0.82
   2 ?    5.8   0.2    0.0045       3.7      34      48 ..      80      94 ..      73     103 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.012
   TIGR00280 51 stgiWkCrkCgakvaGG 67
                s g ++C+ Cg++++ G
  MMETSP1061-20121228|6848_1 55 SPGDYVCKDCGYVFTKG 71
                56778999999999987 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0045
   TIGR00280 34 kkkykCkvCgkkavk 48
                  kykC+ Cg ++ +
  MMETSP1061-20121228|6848_1 80 DSKYKCPPCGAPKFR 94
                579*******99864 PP

>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1      0.39   3.2e+02      71      85 ..       6      20 ..       2      45 .. 0.61
   2 ?   10.5   0.3   0.00016      0.13       2      36 ..      60      93 ..      59     101 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.39
   TIGR04104 71 llyiillllivlltp 85
                ll ++ +++++ll+p
  MMETSP1061-20121228|6848_1  6 LLCLLSVFFGALLMP 20
                333333333333333 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00016
   TIGR04104  2 kCknCkekfsykellkslfsk..kkkikCpnCgekqy 36
                 Ck C++ f+        + +  ++k kCp Cg+ ++
  MMETSP1061-20121228|6848_1 60 VCKDCGYVFTKGPKA---WAAldDSKYKCPPCGAPKF 93
                5*********99887...7777789*******98665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 654.21
//
Query:       MMETSP1061-20121228|6850_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1960.28
//
Query:       MMETSP1061-20121228|6849_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1367.41
//
Query:       MMETSP1061-20121228|6852_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-83  278.1   5.0    1.9e-83  278.0   3.5    1.0  1  TIGR00112 proC: pyrroline-5-carboxylate reductase
    0.00097   16.4   0.3     0.0017   15.5   0.2    1.4  1  TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase
  ------ inclusion threshold ------
      0.031   11.3   0.0      0.046   10.8   0.0    1.2  1  TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)


Domain annotation for each model (and alignments):
>> TIGR00112  proC: pyrroline-5-carboxylate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  278.0   3.5   1.4e-86   1.9e-83       1     263 []      24     286 ..      24     286 .. 0.93

  Alignments for each domain:
  == domain 1    score: 278.0 bits;  conditional E-value: 1.4e-86
   TIGR00112   1 iaiiGaGnmgeallsgllkkgakakkeilvierseeklaalakelgvevtsdaeeav.keadvvllavKPqdleevlaelkseektkeklliSilAGvtiekleqlleaekrvvRvmPNtaakvgagvtaiaassevseeqkelveellkavGkvveveeklldavtalsGSgPAfvflliealadagvklGLpreeakelaaqtlkGaaklleesge..hpalLkdkVtsPgGtTiaglavLeekgvrsavieaveaavkrseeL 263
                 ++++G+G+m++al++gl++k+  a+ + + + +  + + + ak+ g + t+++ee++ +++dv+++avKP+++e+v+a++ +     e+l+iSi+AG+t+++le+ l++ +r+vRvmPNt++ vg++++++a +s ++e+++e v +ll avG + +++e ll+avt+lsGSgPA+v+l+iealad+gv+ GLpr+ a+elaaqt+kGaa+++ +++   hp +Lkd+VtsPgGtTiag+++Le++g+r+a i av+aa++rs +L
  MMETSP1061-20121228|6852_1  24 VGFMGCGKMASALMAGLVNKQLVADPSSITCSDVYPPSVEAAKSKGYSGTASNEEVCkNAKDVIVIAVKPNVVEDVCADIGK--VDSEALIISIAAGITLATLEKCLPG-RRIVRVMPNTPCLVGEAASGYAMGSLCNEKDEEIVAKLLGAVGVAKKLKEVLLNAVTGLSGSGPAYVYLFIEALADGGVRSGLPRDVAMELAAQTVKGAAEMVLNKDSkqHPGKLKDDVTSPGGTTIAGVEALEKAGFRAAAISAVTAATRRSMQL 286
                 68*******************9999999999999777777777777666666666651567899**************9998..45689******************97.99*****************************************************************************************************8875566*******************************************987 PP

>> TIGR01692  HIBADH: 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.2   1.3e-06    0.0017       1      71 [.      26     101 ..      26     124 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.3e-06
   TIGR01692   1 fiGlGnmGgpmaanllkag.....havrvfdlsakaveelveaGaqaaasaaeaveeadvvitmlPagkhvesvya 71 
                 f+G G m +++ a l+ ++      +++  d+ +  ve ++ +G + +as  e++++a  vi +    + ve+v a
  MMETSP1061-20121228|6852_1  26 FMGCGKMASALMAGLVNKQlvadpSSITCSDVYPPSVEAAKSKGYSGTASNEEVCKNAKDVIVIAVKPNVVEDVCA 101
                 8899999877665555444111126899*******************************99988777777777764 PP

>> TIGR00872  gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   3.3e-05     0.046       1      84 [.      22     108 ..      22     121 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.3e-05
   TIGR00872   1 mklgliGlGrmGania.....krlakrghevvgydrdqdaveelkedraegvanlkellkrlsaprvvwvmvpagivdavleelaplle 84 
                 m +g++G G+m +++      k+l+     +   d+ + +ve++k ++  g+a+ +e+ k+     v+ + v   +v++v  ++ ++ +
  MMETSP1061-20121228|6852_1  22 MLVGFMGCGKMASALMaglvnKQLVADPSSITCSDVYPPSVEAAKSKGYSGTASNEEVCKNA--KDVIVIAVKPNVVEDVCADIGKVDS 108
                 66899*******9976122225666667899***************************9985..5677788888899999999877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 1237.40
//
Query:       MMETSP1061-20121228|6851_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.44
# Mc/sec: 1445.88
//
Query:       MMETSP1061-20121228|6853_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.9   0.0      0.033   12.1   0.0    1.4  1  TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region
       0.03   12.2   0.0      0.046   11.6   0.0    1.3  1  TIGR01259 comE: comEA protein


Domain annotation for each model (and alignments):
>> TIGR00426  TIGR00426: competence protein ComEA helix-hairpin-helix repeat region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.6e-05     0.033      44      65 ..      24      45 ..       7      49 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.6e-05
   TIGR00426 44 ktvEdlkkvsGiGekslEknka 65
                 t+ dlk v+GiG +++ k ++
  MMETSP1061-20121228|6853_1 24 PTIADLKSVPGIGPATVKKLRE 45
                5899**************9886 PP

>> TIGR01259  comE: comEA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.2e-05     0.046      95     116 ..      24      45 ..       3      49 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.2e-05
   TIGR01259  95 ksvddltkvsGiGeksleklkd 116
                  ++ dl+ v GiG+++++kl++
  MMETSP1061-20121228|6853_1  24 PTIADLKSVPGIGPATVKKLRE 45 
                 5899999999999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 714.94
//
Query:       MMETSP1061-20121228|6854_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 2261.65
//
Query:       MMETSP1061-20121228|6856_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.002   14.9   0.1     0.0027   14.5   0.0    1.1  1  TIGR02860 spore_IV_B: stage IV sporulation protein B
     0.0043   13.9   0.0     0.0047   13.7   0.0    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.3e-06    0.0027     121     165 ..      61     107 ..      55     113 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.3e-06
   TIGR02860 121 kiesPaeeagiqvGDlilkvngekikeeedvaklineag..geklkl 165
                 k+ +Pa + +++ GD+++++ng+ki++ +d  k+++++   ++ ++l
  MMETSP1061-20121228|6856_1  61 KVAHPAPAHNLHEGDRVIALNGKKIESYNDNLKVMKKSIddNNVVRL 107
                 7899**************************99999987644445555 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.3e-06    0.0047     366     416 ..      51     101 ..      20     112 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.3e-06
   TIGR02037 366 ekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeakkk 416
                 +kkg  +  +k  +pa    l++gd ++++n k+++s ++  kv++++ + 
  MMETSP1061-20121228|6856_1  51 KKKGKYIYLAKVAHPAPAHNLHEGDRVIALNGKKIESYNDNLKVMKKSIDD 101
                 334555555555556666666666666666666666666666666544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 665.68
//
Query:       MMETSP1061-20121228|6857_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-06   23.5  18.6    1.8e-05   21.8   5.8    2.4  2  TIGR00155 pqiA_fam: integral membrane protein, PqiA family


Domain annotation for each model (and alignments):
>> TIGR00155  pqiA_fam: integral membrane protein, PqiA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   5.8   4.3e-09   1.8e-05     283     392 ..      81     191 ..      39     202 .. 0.76
   2 !    7.1   1.7   0.00013      0.54      98     169 ..     328     400 ..     311     433 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 4.3e-09
   TIGR00155 283 tilsGvislvssgsyavaavvflasilvPilkvivilylllsvkfkgkrdlkrrilllelvefvGrWsmldlfviallmslvrrgeils....ft.vgpgalyfgaaviltllsa 392
                  ++s v  l+   sy++a  + ++si  P  k+ +++++ + + +    + ++r ll+e+++ +G+Ws +d++v+  +m   r   +l+    +  v ++ + f   vi t++s 
  MMETSP1061-20121228|6857_1  81 SVISSVGKLWDAKSYPLAIFIAITSIGWPYIKL-AMATFAWVMPYT---NPRKRELLIEIIDALGKWSFVDIMVLVEIMVAFRSSVVLApglsLEiVIVAQWGFYGFVIATMMSL 191
                 6899999*************************6.899999998876...5567889*****************987666555544444311112202233333444455555543 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00013
   TIGR00155  98 gyaitgtlvllcvvvvPiilvllilllvlakelqvklrevll.vlerlkeWvmldiylvgvgvaivkvreyas 169
                 g  ++ ++ +++ + +P+ + +l ++l+    l+ ++ e +  + e   +W  +++ l +   a++++  +++
  MMETSP1061-20121228|6857_1 328 GTRFIQVMWFFLGIAMPLWCSVLFVILYAVPSLSKEMMEYIFtMAEVTFAWSCAEVLLLSTIFAVLQMPIFGA 400
                 56678899****************************9999985777778*********999888887766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1605.27
//
Query:       MMETSP1061-20121228|6861_1  [L=841]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (841 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.19s 00:00:00.51 Elapsed: 00:00:00.54
# Mc/sec: 2055.61
//
Query:       MMETSP1061-20121228|6858_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.44
# Mc/sec: 1478.88
//
Query:       MMETSP1061-20121228|6862_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 2326.31
//
Query:       MMETSP1061-20121228|6860_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.5   2.0      0.002   15.1   1.4    1.1  1  TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB
  ------ inclusion threshold ------
       0.01   11.8   2.5      0.014   11.4   1.7    1.1  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR03469  HpnB: hopene-associated glycosyltransferase HpnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   1.4   9.5e-07     0.002      40     109 ..      46     117 ..      31     142 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.5e-07
   TIGR03469  40 leawPevvavvPardeaevigeaveslleqdYpGklkvilvDDeseDgtaeiareva..ealdkadrltvvs 109
                 +++  + +avv a +e  ++ + v+ ll+q+   ++ v+  DD+s  + a+ a+e+   + ++ a+ ++vvs
  MMETSP1061-20121228|6860_1  46 QAVTAQNAAVVKAIEEQTAVLKKVSQLLQQKQKTTVVVVNKDDKSGRSVASTAAETEmsTITEDAEVVQVVS 117
                 33456789**************************************99999888654004444455556655 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   1.7   6.9e-06     0.014     778     865 ..      23     113 ..      10     139 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.9e-06
   TIGR03683 778 rkeieklkeklaelkieeleseaekvgdvkv.vvekvdadeeelkeiaekl.aekekvvvlvsekegkvkvvvssgekvkvka.gelvkei 865
                     ++++++l+  +i++l+++++ v   +  vv++++++++ lk++ + l ++++++vv+v++++++ + v+s++ ++++++ +e ++ +
  MMETSP1061-20121228|6860_1  23 SGITKEYSDELIAKVITQLAEQTQAVTAQNAaVVKAIEEQTAVLKKVSQLLqQKQKTTVVVVNKDDKSGRSVASTAAETEMSTiTEDAEVV 113
                 4456789999999999999*9999999999889999***9999999999994445556677777788888888888777554303333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       483  (0.117747); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 1675.53
//
Query:       MMETSP1061-20121228|6863_1  [L=1132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.13s 00:00:00.60 Elapsed: 00:00:00.32
# Mc/sec: 4669.11
//
Query:       MMETSP1061-20121228|6859_1  [L=1943]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   29.6   2.1      0.014   13.4   0.0    4.9  5  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase


Domain annotation for each model (and alignments):
>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2      0.36   1.5e+03      28      56 ..     476     505 ..     420     535 .. 0.51
   2 !    8.6   0.0    0.0001      0.42       3      34 ..    1147    1181 ..    1146    1262 .. 0.80
   3 ?   -1.8   0.0      0.16   6.7e+02      20      67 ..    1488    1537 ..    1485    1558 .. 0.71
   4 !    2.7   0.0    0.0066        27      20      71 ..    1591    1644 ..    1585    1680 .. 0.73
   5 !   13.4   0.0   3.4e-06     0.014      86     185 ..    1776    1877 ..    1691    1878 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.36
   TIGR02009  28 dklglefd.eqineslkGlkredivrailk 56 
                 +++  +++  q+++s++  + +d + a+++
  MMETSP1061-20121228|6859_1 476 QAIATKLTkDQQIQSIAANSDMDALDAMMN 505
                 222222222223333333333333333333 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0001
   TIGR02009    3 aviFDlDGvlvdtaslHakAwkaladklgle...f 34  
                  + iF l G lvdt  l  k w+++a ++gle   +
  MMETSP1061-20121228|6859_1 1147 GAIFRLEGALVDTTGLEQKVWNRIATEFGLEeplL 1181
                  679*************************9986641 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.16
   TIGR02009   20 akAwkaladklglefd.eqineslkGlkredivrailksr.gskelseek 67  
                  + Aw+ +a ++g++   ++++ s++ +  ed v ++l  +    ++s+e+
  MMETSP1061-20121228|6859_1 1488 TDAWRVIATEFGFDVPsTEQIISVADMAPEDAVIKVLLTNyDIDKCSAEE 1537
                  579**********9777778888888877776655554431333555555 PP

  == domain 4    score: 2.7 bits;  conditional E-value: 0.0066
   TIGR02009   20 akAwkaladklglefd.eqineslkGlkredivrailksrgsk.elseekieql 71  
                  a+Awk++a ++gl+    +++   + ++ ed+v++++  +++  ++s+e++e+ 
  MMETSP1061-20121228|6859_1 1591 ANAWKEIATEYGLNAPtMEQMRLAAEMSLEDTVHKLILMNNDIeSCSPEEVEEF 1644
                  78************7656777777889999999887766422247777776654 PP

  == domain 5    score: 13.4 bits;  conditional E-value: 3.4e-06
   TIGR02009   86 tgaevlpgienlleelkkkkiavalgss..sknakaiLaklgltdlfdavvdasevkegKPaPetFLaaaekLgvkpeecvvfEDaeaGveaaraagmfava 185 
                    ++vlp++   ++ lk+ ++  +++s+  s ++k++++ +gl +lf    ++s+      + +  L  a +++ +p++cvvf+ +    +aa+  +m++va
  MMETSP1061-20121228|6859_1 1776 PMVQVLPDVLDWIKSLKAVEMGCGVVSHleSDQMKILIEYAGLSELFPEGNQVSHSNGYLLDNQQLLGTALRIERRPDHCVVFDTSPPASAAAHDFDMRSVA 1877
                  3479***********************7336889999**********86555555555667999********************9999999***99999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1943 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       282  (0.068747); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.79u 0.14s 00:00:00.93 Elapsed: 00:00:00.49
# Mc/sec: 5233.77
//
Query:       MMETSP1061-20121228|6865_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1125.38
//
Query:       MMETSP1061-20121228|6869_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       326  (0.0794734); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 634.80
//
Query:       MMETSP1061-20121228|6864_1  [L=1078]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1078 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.42
# Mc/sec: 3387.72
//
Query:       MMETSP1061-20121228|6872_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1301.89
//
Query:       MMETSP1061-20121228|6875_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 390.23
//
Query:       MMETSP1061-20121228|6873_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-72  241.6   0.0    2.7e-72  241.2   0.0    1.1  1  TIGR00798 mtc: tricarboxylate carrier


Domain annotation for each model (and alignments):
>> TIGR00798  mtc: tricarboxylate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.2   0.0   6.7e-76   2.7e-72       8     317 .]      96     418 .]      91     418 .] 0.90

  Alignments for each domain:
  == domain 1    score: 241.2 bits;  conditional E-value: 6.7e-76
   TIGR00798   8 prydqstflgrarhflevtdpltllssekklekare.....iledykkgkvsn.ltseelwkakklvdsalHPdTgekvlllgRmsaqvpanlvvtggmlllykslpavvfwqWlNQSfNavvNyaNrsgdkkltseellksYvaAvtaalavalglnklvkkakslsp..ligrlvPfaAvalAnaiNiplmRknElkeGievvdedgetv...gkSkkaaakaiaqvvlsRvllavPlmvlpplilnrler.tallkkrpkv.ilvqtlligltllvalPlalalfpqksaieveklepslqkkkkk.skqpvkkvyynkGl 317
                 +r+dq+tf gr   +l + dp++ll  e +++ a+e      + +  +g+ +    s +lw++k++ +salHPdTge +  ++Rms  vp n  +++ m+    ++  ++ w W+NQS Na+vNy Nr++++++t+e+l+ksY+aAv++al va gl ++v+k  s++    + + v f+  ++A+++N  ++R+ E+ +Gi ++d +g+++    +S+ aa++ +++++ sR+ll++P   lpp+ +  l   + +l+++p + +++ t+l+  ++ ++lP ++a+fpq  +i  +++e++ q++++  ++qp k+ yynkGl
  MMETSP1061-20121228|6873_1  96 QRFDQETFGGRFARMLLACDPTLLLYGEDQIKAAQErlreaAVAELETGSSTVfSDSRSLWESKRIAESALHPDTGEFIPRPFRMSGYVPYNGPICVSMVASTSTM-PLLIWSWVNQSQNALVNYYNRNASSPMTNETLMKSYTAAVGSALVVAFGLSTFVQKRYSAAKakQLMKYVAFPSAVVASSLNCYVVRSPEIATGIPLTDRNGNNLlpgETSQIAAKRGVESTTASRALLQAPVYFLPPMLMGLLPPlKRVLERNPRTrVPITTFLVLTSFGLGLPATIAIFPQVAEIPASEVEQKYQHLIDPaTQQPYKVFYYNKGL 418
                 79***************************999998722222456778888888778899***************************************99876655.5778**************************************************998876666788899**********************************98664479999***************************999751445666666689****************************************986156777899*****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1839.05
//
Query:       MMETSP1061-20121228|6877_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|6876_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-60  200.6   0.8    1.1e-59  200.4   0.5    1.0  1  TIGR00788 fbt: folate/biopterin transporter


Domain annotation for each model (and alignments):
>> TIGR00788  fbt: folate/biopterin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.4   0.5   2.6e-63   1.1e-59     256     462 ..       3     212 ..       1     217 [. 0.95

  Alignments for each domain:
  == domain 1    score: 200.4 bits;  conditional E-value: 2.6e-63
   TIGR00788 256 kavlfiflsylnlPgvlnavfvattqvLplgPefsgtvklvvnlgslagvvvvdrflkllplRlvfgltavlltlsslfdlilvkrlNlaiGisdevfvlgdsiilevlaqlkfmPvlvllarlcPsGsEssvfalLasilhlgsvvssalGvlLmeligitsdnsnalwllillhilapllplpllyllP....rledvidkegkkaiek 462
                 k+  fifl ++ +P + +a+ ++ t+ L +gPef+g+v+ v    sl gv++++ +lk+ +++ ++ +++++   ++l+dl+l+++ N+aiGi+d++fv+gd ++l vl  + f+P+lvl+arlcP+G+E+ +fa+L+si + +  v++++G+lL++++g+t+ n+++l ll  +++l++l pl +++ l      +e++i++e   a+++
  MMETSP1061-20121228|6876_1   3 KPAAFIFL-WQSTPTSEGAMLFFMTDDLGFGPEFLGRVRFVAAFSSLFGVWLYNTYLKTKSIKDILFWSTIVSFPLGLLDLVLISHANRAIGIPDTWFVFGDDVVLSVLGEIAFLPTLVLAARLCPRGVEAVLFATLMSINNGAGTVGTEIGALLTKTLGVTETNFDNLALLSFVCNLTSLYPLLFIGWLDgvgsVSEQQIEEEEEAAAAA 212
                 8999****.***********************************************************************************************************************************************************************************88767766677777777655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1042.26
//
Query:       MMETSP1061-20121228|6879_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 469.29
//
Query:       MMETSP1061-20121228|6881_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 412.47
//
Query:       MMETSP1061-20121228|6880_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-28   95.6   0.0    8.1e-28   95.3   0.0    1.0  1  TIGR00588 ogg: 8-oxoguanine DNA-glycosylase (ogg)
    0.00038   18.0   0.0    0.00093   16.7   0.0    1.6  2  TIGR01083 nth: endonuclease III
     0.0067   13.8   0.0      0.016   12.6   0.0    1.5  1  TIGR01084 mutY: A/G-specific adenine glycosylase


Domain annotation for each model (and alignments):
>> TIGR00588  ogg: 8-oxoguanine DNA-glycosylase (ogg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.0   5.9e-31   8.1e-28     160     257 ..      39     138 .]      35     138 .] 0.91

  Alignments for each domain:
  == domain 1    score: 95.3 bits;  conditional E-value: 5.9e-31
   TIGR00588 160 yhgfPsleaLagreaeakLr.klGlGyraryvretaralleekgeaaylqql..keasyedareaLlelsGvGpkvaDCicLmaldkdeavPvDvhvrria 257
                 +++fPsl++L++r+++++Lr  +G+Gyra yv +t  a+l++kg++ayl+      ++   +++ L+e+ GvG kvaDC+ L++ld+d+a+PvD hv++ia
  MMETSP1061-20121228|6880_1  39 FYSFPSLDQLSARATDKDLRgTCGMGYRAGYVLDTM-AILKDKGGEAYLEDTlrAISDPATVQDRLCEFRGVGRKVADCVALFSLDQDDAIPVDTHVWKIA 138
                 89******************669**********996.788999******87633345667899************************************97 PP

>> TIGR01083  nth: endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.31   4.3e+02      36      45 ..      48      57 ..      36      79 .. 0.86
   2 !   16.7   0.0   6.8e-07   0.00093     106     142 ..     100     137 ..      94     138 .] 0.86

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.31
   TIGR01083 36 LsaqatDksv 45
                Lsa+atDk  
  MMETSP1061-20121228|6880_1 48 LSARATDKDL 57
                8999999865 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 6.8e-07
   TIGR01083 106 leelvkLpGvgrKtAnvvlsvafgip.aiavDtHvkRv 142
                 ++ l +  GvgrK A  v   + +   ai vDtHv ++
  MMETSP1061-20121228|6880_1 100 QDRLCEFRGVGRKVADCVALFSLDQDdAIPVDTHVWKI 137
                 578999**********99888888766********887 PP

>> TIGR01084  mutY: A/G-specific adenine glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.2e-05     0.016      49     136 ..      35     131 ..      28     137 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
   TIGR01084  49 yferflekfPtveaLanaeedevlklWeGlGYYaRaRnLkkaakevkeefggel..........Pkdled.lkalkGvGrytagailslalnkkvpi.vD 136
                 y+ +f   fP++++L++   d+ l+   G+GY  Ra  +  + + +k++ g             P +++d l ++ GvGr  a  ++ ++l++  +i vD
  MMETSP1061-20121228|6880_1  35 YYYQF-YSFPSLDQLSARATDKDLRGTCGMGY--RAGYVLDTMAILKDKGGEAYledtlraisdPATVQDrLCEFRGVGRKVADCVALFSLDQDDAIpVD 131
                 45555.68***********************9..677777777777777765441222222233555443378899****************99887455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 867.36
//
Query:       MMETSP1061-20121228|6886_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1061-20121228|6885_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       350  (0.0853242); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 485.53
//
Query:       MMETSP1061-20121228|6884_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       330  (0.0804486); expected 82.0 (0.02)
Passed bias filter:                      203  (0.0494881); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 797.21
//
Query:       MMETSP1061-20121228|6889_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1286.89
//
Query:       MMETSP1061-20121228|6888_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-06   26.0   0.0    2.3e-06   25.2   0.0    1.3  1  TIGR02611 TIGR02611: TIGR02611 family protein


Domain annotation for each model (and alignments):
>> TIGR02611  TIGR02611: TIGR02611 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   5.6e-10   2.3e-06      16      82 ..     357     426 ..     343     444 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 5.6e-10
   TIGR02611  16 krkaygfvvrplvlvvGlvvlvvGiiilPlPgp...GWlvvFiglailslefrwakrllrwlkrkydeff 82 
                  ++++  + r++v+v+G  +l +G+i++PlP p   G ++v  g+++l +ef+  k+++r  ++ +++++
  MMETSP1061-20121228|6888_1 357 AQRWLRRMRRTGVGVAGGTMLGLGLIMIPLPFPppfGEVLVLGGVSVLGTEFEAPKKVVRSARNALQNAV 426
                 467899999********************98776789*********************998888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 1933.46
//
Query:       MMETSP1061-20121228|6892_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-24   83.0   0.0    6.2e-24   82.9   0.0    1.1  1  TIGR01499 folC: bifunctional protein FolC
    5.1e-05   20.2   0.0    5.1e-05   20.2   0.0    1.1  1  TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase
    6.4e-05   19.7   0.0    7.7e-05   19.4   0.0    1.1  1  TIGR04012 poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB
    0.00013   19.0   0.0    0.00014   18.8   0.0    1.1  1  TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase
    0.00073   15.5   0.0    0.00086   15.2   0.0    1.0  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
  ------ inclusion threshold ------
       0.02   11.7   0.0      0.023   11.6   0.0    1.1  1  TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
      0.023   11.5   0.0      0.023   11.5   0.0    1.0  1  TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase


Domain annotation for each model (and alignments):
>> TIGR01499  folC: bifunctional protein FolC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   1.1e-26   6.2e-24      17      69 ..      36      88 ..      20      89 .] 0.88

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 1.1e-26
   TIGR01499 17 klrvihvaGTnGKGStaaflesiLeaaglkvglftSPHlvsfrERirvngepi 69
                ++  ih++GT+GKGSta + e++L+a+g+++glftSPHl+++rERir ng+p+
  MMETSP1061-20121228|6892_1 36 LPLLIHITGTKGKGSTACMCEAVLRAHGYSTGLFTSPHLMDIRERIRWNGKPV 88
                3568***********************************************98 PP

>> TIGR01085  murE: UDP-N-acetylmuramyl-tripeptide synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   8.8e-08   5.1e-05      87     119 ..      39      71 ..      13      85 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 8.8e-08
   TIGR01085  87 viGvtGTnGKttttsliaqlleklgkktgligT 119
                 +i +tGT GK +t+++ +++l++ g +tgl + 
  MMETSP1061-20121228|6892_1  39 LIHITGTKGKGSTACMCEAVLRAHGYSTGLFTS 71 
                 799**************************9875 PP

>> TIGR04012  poly_gGlu_PgsB: poly-gamma-glutamate synthase PgsB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.3e-07   7.7e-05      23      58 ..      31      66 ..      23      74 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.3e-07
   TIGR04012 23 knlkkipirihvNGiRGKssvtRLiaailreggykv 58
                k+  ++p+ ih+ G++GK s + + +a+lr+ gy +
  MMETSP1061-20121228|6892_1 31 KKDPRLPLLIHITGTKGKGSTACMCEAVLRAHGYST 66
                556789***************************976 PP

>> TIGR01087  murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.5e-07   0.00014     106     133 ..      39      66 ..      27      79 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.5e-07
   TIGR01087 106 vvaitGtnGKsTttslltallkalglka 133
                 ++ itGt+GK +t+ + +a+l+a g  +
  MMETSP1061-20121228|6892_1  39 LIHITGTKGKGSTACMCEAVLRAHGYST 66 
                 689********************99654 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.5e-06   0.00086     473     513 ..      30      71 ..      26      82 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.5e-06
   TIGR02068 473 eeddgriPi.vavtGtnGkttvtrlvahilkltGkvvGlttt 513
                 +++d r+P+ + +tGt Gk  ++ +   +l+  G+ +Gl t+
  MMETSP1061-20121228|6892_1  30 QKKDPRLPLlIHITGTKGKGSTACMCEAVLRAHGYSTGLFTS 71 
                 678899996369**************************9887 PP

>> TIGR01081  mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.9e-05     0.023     104     134 ..      39      69 ..      27      77 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.9e-05
   TIGR01081 104 vlavagthgktttasmlawvleqaglkpgfl 134
                 ++ ++gt+gk +ta m   vl   g+ +g++
  MMETSP1061-20121228|6892_1  39 LIHITGTKGKGSTACMCEAVLRAHGYSTGLF 69 
                 5789***********************9975 PP

>> TIGR01143  murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.9e-05     0.023      56     100 ..      20      63 ..       5      72 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.9e-05
   TIGR01143  56 dtleaLqklAkakreklkakvigiTGSsGKTttKemlaaiLskky 100
                 ++++ L + A+ k  +l+   i iTG  GK +t  m +a+L++++
  MMETSP1061-20121228|6892_1  20 NNKRKLPETAQKKDPRLPLL-IHITGTKGKGSTACMCEAVLRAHG 63 
                 56777777777777777765.9*******************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 469.88
//
Query:       MMETSP1061-20121228|6890_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1235.04
//
Query:       MMETSP1061-20121228|6894_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 425.96
//
Query:       MMETSP1061-20121228|6896_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 405.40
//
Query:       MMETSP1061-20121228|6891_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-118  393.1   0.0   1.4e-116  387.7   0.0    2.3  1  TIGR01986 glut_syn_euk: glutathione synthetase


Domain annotation for each model (and alignments):
>> TIGR01986  glut_syn_euk: glutathione synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  387.7   0.0  3.5e-120  1.4e-116       2     473 .]      66     633 ..      65     633 .. 0.83

  Alignments for each domain:
  == domain 1    score: 387.7 bits;  conditional E-value: 3.5e-120
   TIGR01986   2 eeLvkealdfalaeGlvltekkvekegevi................asvaPitlfPsviPealfeeavsvqkvfneLvdrvsqdaafLektls.slaksDeftakLldlykkvlkavenkk...qdlrLGlfrsDYlldkddgt....e....alkqvelntisvsfgGlskkvsrlhayllrslkkq.kkadken.................ylvintsskglakalakaveaYksprksitskd.............aivllivqeeernifDqrvleleLlekfniksirktlaevneklsldedenkLfvkd........teqevavvYyrsGYtlddypsee...eWearLllekslaikcPdiatqLaGskkiqqeLaeegvLerfle.....dkeevaklrktfadlysL..DdtkrGkegiklalekPs.kfvlkPqreGGGnnvYgedipelLkklke................eerdaYiLmekiepelsenillreekae.keqviselGiyGvvlrnekk.vvvneqsGfllrtkikksneGGvaaGfavLdsiyl 473
                 ++L+ +a+ +a+a+G+ +++k+++ +g+ +                   aP++l+P + P+a+fe++ sv ++fneLvdrvs+d +fLe+tl   +  +D +tak+ldly++v    +  +      rLG++rsDY+l++dd+     +    +lkqvelnti+ sfgGls k+ +lh+yl++  +k+ ++  + n                  ++ n +  +l  +   a++ Y ++  s + +d             ++vl++vqe+e n +Dqr+le  L e ++i ++r+ l  ++ +ls+  + + L+ +d         + evavvY+r GY+++dyp  +   eW+arL+le s a kcP + ++LaG+kk+qqeLa++gvLerf++     ++++va++r++fa+lysL  D t++   ++++ l+  +  +vlkPqreGGG n Yg+d+ e L +  +                +e + YiLm++++p  +  il+r+++ e   + iselG +G++l   +  v+ n+++Gfllrtk+ + +eGGva+Gfa+L+s+yl
  MMETSP1061-20121228|6891_1  66 DDLAVQANSYASANGIQVEKKRTDSNGNGNsdsnnggddsttsttfFEGAPMSLLPNAYPRAAFEQSRSVAPAFNELVDRVSRDPDFLEETLGgGVSSMDPYTAKILDLYRRVYVQSDSEAparTADRLGIHRSDYMLHRDDNNgddnNsspyQLKQVELNTIASSFGGLSCKIANLHRYLTSRFEKEtNEFLTANiekvvgaeaaalsaqapGVPYNPTLEELPLGFKVAYDRYVERFGSDSDSDgdsdenkskgkkkPVVLFVVQEGETNTVDQRLLEFALWESHGIPVVRRSLTRLDSELSIGANGELLLASDngsgsgsgNGSEVAVVYFRAGYAPTDYPDGDdgiEWNARLTLETSRATKCPCLGYHLAGTKKVQQELARPGVLERFFPndsdaNADKVAQMRACFAGLYSLgdDATEEDLGAVRRVLDGGQaGYVLKPQREGGGYNFYGDDLAEKLAQNVKvddddkasttsplslsDELAEYILMQRLFPPQQTAILMRGGRVEgTGDSISELGAFGTLLCGPDGeVLHNQYAGFLLRTKFSNVDEGGVASGFATLSSPYL 633
                 57999**************9999987776667778999998877666779******************************************7358899************98765544444447779***********986432222123338**************************9876655414444444433333333333332333445555667777788888888777655554447888999999999***********************************************999777776677777766789*****************8763447*****************************************97433345789**************644577777899****986526*********************9986433333666666777777778889********************6652679************987755********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 2461.21
//
Query:       MMETSP1061-20121228|6897_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-60  201.0   1.0    1.6e-59  199.9   0.7    1.4  1  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
    3.9e-56  188.6   0.0      5e-56  188.2   0.0    1.0  1  TIGR02765 crypto_DASH: cryptochrome, DASH family
    2.5e-36  123.3   0.6      2e-26   90.6   1.3    2.1  2  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
    2.1e-08   31.7   0.0    2.8e-07   28.0   0.0    2.2  3  TIGR00591 phr2: deoxyribodipyrimidine photolyase


Domain annotation for each model (and alignments):
>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.9   0.7   1.5e-62   1.6e-59       4     435 ..      10     473 ..       7     477 .. 0.80

  Alignments for each domain:
  == domain 1    score: 199.9 bits;  conditional E-value: 1.5e-62
   TIGR03556   4 lfwhrrdlrlsdnlglaaar.qksakvvglfcldekilkaddiaparvayllgclqelqerykrlgsellilrgdpvqllpklakaleakavywnldv..epysrkrdravaaalkekgiavktawdqllhs.peeiltksgkpy.tvytpfwknwsskkkaepv...etpkel...eglteaekeaiaklgvialpt.....akdlgfewdad....l..ilepgeaaaeakleefvdka..ieeyqe.qrnfpa.ldgtsqlsaalkfgvigirtvwqatlealeasrseearesirtwqqelawrefyqhalysfpeladgpy....rekf.kefpwenneahfqawcegktgypivdaamrqlnetgwmhnrcrmivasfltk.dliinwqwgekyfmqklidgdlaannggwqwsassgmdpkplrifnpasqaqkfdpeaeyirrwlpelrsldtkdl 435
                 + w r+ lrlsdn +l a   q+ ++v  ++ ld +  +    +p r  +l+ clq+l+++ + lgs+l +l+gdpv++lp+  ++ + + + +++d   epy+ krd +++   ++ +i++ ta  + l++  + +  + +kp     t f k + + +  + v    + +++   e++    k ++ +   ++lp       +++   wda+    l  +++ ge+ a++ l++  + a  ++ +++ q    + ++ t+ l + l +g++++r+vw a  +a+++s   ++ +   +   ++ wr+f + + +   +   g +     +k+ +++pw+++ ++ +aw +g+tg+p +daamrql++ gw+h   r  va flt+ dl   w+ g k+f  +l+d d a n   w w + sg+  + +r + p s  qk d +a+yir+++pelr + +k++
  MMETSP1061-20121228|6897_1  10 MHWFRKGLRLSDNPALVACLeQEPKNVYPVYVLDGNSYQLLRCTPLRANFLVECLQDLDKNLRTLGSRLYVLSGDPVEVLPEKWEEWKITDLSFEEDEtgEPYALKRDDTIVGLAQDSDIRLFTAPSETLYPmRDYVAKSGKKPVpGTMTAFQKLFGGMPEMKKVlphPSKNQFprnEDFEALSKLYLPPNRPTDLPWprgipRAEVESLWDASdcenLtpVVHGGETLARKALKKKLKDAnwVATFEKpQTSCTSlEPSTTALGPYLSWGCLSPREVWFAIDKAIAKSSVTKISKPPVSLHGQMLWRDFNNLMAHDANAQHPGCWnhmeGNKYcRQIPWDDDPKLVEAWKQGRTGFPWIDAAMRQLAQEGWIHHLGRHAVACFLTRgDLWQSWEEGAKHFEAQLLDADYALNGFNWMWLSCSGFFYQYFRCYSPISYQQKNDRTAQYIRKYVPELRDVPSKYI 473
                 68*************98875156667889***************************************************************999985459************************76666651566666667786346788999888776655441103332221113333334444455566777752222235677889974222233357789****99998876543337777652444544257899***************************99999999889999999****987665544444444311113444389*************************************************87999********************************************************************99987 PP

>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.2   0.0   4.8e-59     5e-56       4     431 .]      10     465 ..       7     465 .. 0.84

  Alignments for each domain:
  == domain 1    score: 188.2 bits;  conditional E-value: 4.8e-59
   TIGR02765   4 lllfrndLRleDnellakasskee.elvpvyvfdarqiklsavaglaklGkarakFlaesvadLktsLkklGsdLlvragkpedvlkelvkelkvravflteeegseek..svekkveealaklkie.eklwgstllheddlpfe..ledlPdvftqfRkkveaklkvrksleapek..lpalpk.........sedeganlPtleelveaese.....ederssle.fkGGetsalarvkeyflsks.lksYketRngllgvdys.tklspwLalGcvsarqihealkr.Yekergendstywvif..eLlWRdyfrflalkygdk....lFrleGlrg.kkaktkedekilekwkegttgyplvdanmreLaatGymsnRgRqnvasflvk.elgldWryGaewfetlLvDyDvssnwgnWqylaGvgndpRgaRqFnlekqakdYDpdgeyvktWvkel 431
                 + +fr+ LRl+Dn++l+   ++e  ++ pvyv+d + ++      l ++ ++ra+Fl e+++dL+++L++lGs+L+v++g p +vl+e  +e k++++ ++e e+ e    + + ++    +++ i+ ++  ++tl+  +d   +   + +P + t f k      +++k+l+ p+k  +p  ++           + +++lP    +  ae+e     +d++   + ++GGet a + +k+ + + + ++++ +   +    + s t l p+L  Gc+s+r +  a+ +   k+++   s   v++   +lWRd+ +++a+  +++      ++eG +  ++++++ d k++e+wk+g+tg+p +da+mr+La+ G++   gR  va fl++ +l   W  Ga++fe +L+D D + n  nW++l   g      R ++++   ++ D+  +y++++v+el
  MMETSP1061-20121228|6897_1  10 MHWFRKGLRLSDNPALVACLEQEPkNVYPVYVLDGNSYQ------LLRCTPLRANFLVECLQDLDKNLRTLGSRLYVLSGDPVEVLPEKWEEWKITDLSFEEDETGEPYalKRDDTIVGLAQDSDIRlFTAPSETLYPMRDYVAKsgKKPVPGTMTAFQKLFGGMPEMKKVLPHPSKnqFPRNEDfealsklylPPNRPTDLPWPRGIPRAEVEslwdaSDCENLTPvVHGGETLARKALKKKLKDANwVATFEKPQTSCTSLEPStTALGPYLSWGCLSPREVWFAIDKaIAKSSVTKISKPPVSLhgQMLWRDFNNLMAHDANAQhpgcWNHMEGNKYcRQIPWDDDPKLVEAWKQGRTGFPWIDAAMRQLAQEGWIHHLGRHAVACFLTRgDLWQSWEEGAKHFEAQLLDADYALNGFNWMWLSCSGFFYQYFRCYSPISYQQKNDRTAQYIRKYVPEL 465
                 78*************998777665499*******98887......78999***************************************************988887651155667888888888888999999*****99988878899*************************9955555555555544544223333344444444444447777756665554278******************9*****999999999877257****************9997615566677777777766337*********997655442222689***9853899************************************************87899***********************************99*************************985 PP

>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0     7e-11   7.2e-08       3     142 ..      10     152 ..       8     193 .. 0.82
   2 !   90.6   1.3     2e-29     2e-26     235     446 ..     267     480 ..     222     482 .] 0.82

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 7e-11
   TIGR02766   3 vvwfrrdlrvednpalaaaareg..evlpvfvwapeeegqfypgrvsrwwlkqslahldqslkslgaklvlkrsedtvaalldvvkstgatklvfnh..lydpvslvrdhkvkeklaakgisvqsfnadllyepwevvdekgka 142
                 + wfr+ lr+ dnpal a+ ++   +v pv+v   +             +l + l++ld+ l++lg++l +  s d v+ l +  ++   t l f+     +p +l rd+++     +  i + +  ++ ly   + v+++gk 
  MMETSP1061-20121228|6897_1  10 MHWFRKGLRLSDNPALVACLEQEpkNVYPVYVLDGNSYQLLRCTPLRANFLVECLQDLDKNLRTLGSRLYVL-SGDPVEVLPEKWEEWKITDLSFEEdeTGEPYALKRDDTIVGLAQDSDIRLFTAPSETLYPMRDYVAKSGKK 152
                 67***************998876568******977776666666666789******************9875.7899****************997522679**********99999999999888889999888888888764 PP

  == domain 2    score: 90.6 bits;  conditional E-value: 2e-29
   TIGR02766 235 sastsllspylhfgevsvrkvfqlvrlkqivwanegnseaeesvelflrsiglreysrylsfnfpfshe....k.sllahlkffpwkvdeekfkawrqgrtgyplvdagmrelwatgwlhdrirvvvssfavkv.lllpwkwgmkyfwdtlldadlesdilgwqyisgslpdgreldrldnpelegakydpegeyvrrwlpelarlptewihhpwdap 446
                   st+ l pyl +g +s r+v+  +   + + +   ++ ++  v+l  + +  r++   ++ +    h     +       +  pw+ d +   aw+qgrtg+p +da mr+l   gw+h+  r  v+ f+ +  l   w+ g k+f   lldad   + + w ++s s     ++ r   p    +k d   +y+r+++pel  +p+++i+ pw+ap
  MMETSP1061-20121228|6897_1 267 EPSTTALGPYLSWGCLSPREVWFAID--KAIAKSSVTKISKPPVSLHGQ-MLWRDFNNLMAHDANAQHPgcwnHmEGNKYCRQIPWDDDPKLVEAWKQGRTGFPWIDAAMRQLAQEGWIHHLGRHAVACFLTRGdLWQSWEEGAKHFEAQLLDADYALNGFNWMWLSCSGFF-YQYFRCYSPISYQQKNDRTAQYIRKYVPELRDVPSKYIYSPWEAP 480
                 4578889**************98764..445555666667777776654.4478999888887666654111020223457899**********************************************998537889***************************999654.56779999*999********************************9 PP

>> TIGR00591  phr2: deoxyribodipyrimidine photolyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   2.8e-10   2.8e-07      22     155 ..       7     143 ..       1     195 [. 0.80
   2 ?    1.3   0.0     0.035        36     255     280 ..     270     295 ..     214     304 .. 0.75
   3 ?   -3.8   0.1       1.2   1.3e+03     344     367 ..     361     384 ..     357     387 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 2.8e-10
   TIGR00591  22 egvvywmsrdqrvqdnwaliyaqelalkeklPlavvfclvdkfldatirhykfllkGlrevakelkeldipfhlllgsakevlpkfveekkaaavvtDfsplriikqwvee...vakalpkdvplvqvdahnvvPvw 155
                 +  ++w  +  r+ dn al+   e   k+  P+ v  +   + l +t  + +fl++ l++++k+l++l+ ++++l+g++ evlp+  ee+k++ +  +   + ++   +++   v  a  +d+ l+   ++++ P++
  MMETSP1061-20121228|6897_1   7 VNAMHWFRKGLRLSDNPALVACLEQEPKNVYPVYVLDGNSYQLLRCTPLRANFLVECLQDLDKNLRTLGSRLYVLSGDPVEVLPEKWEEWKITDLSFEEDETGEPYALKRDdtiVGLAQDSDIRLFTAPSETLYPMR 143
                 44689***********************************************************************************9999988766666555544443321123333445666666666666665 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.035
   TIGR00591 255 lsnlsPylhfGqlsaqrvalevkrar 280
                    l Pyl +G ls+++v  ++ +a 
  MMETSP1061-20121228|6897_1 270 TTALGPYLSWGCLSPREVWFAIDKAI 295
                 45799***********9998888664 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 1.2
   TIGR00591 344 kaktaDklWnaaqlelveeGkmhg 367
                 +++t  +  +aa ++l +eG +h 
  MMETSP1061-20121228|6897_1 361 QGRTGFPWIDAAMRQLAQEGWIHH 384
                 56777778899**********996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1631.25
//
Query:       MMETSP1061-20121228|6902_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 365.97
//
Query:       MMETSP1061-20121228|6895_1  [L=1333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   16.0   0.1     0.0035   15.0   0.1    1.4  1  TIGR02172 Fb_sc_TIGR02172: fibrobacter succinogenes paralogous family TIGR02172


Domain annotation for each model (and alignments):
>> TIGR02172  Fb_sc_TIGR02172: fibrobacter succinogenes paralogous family TIGR02172
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   8.5e-07    0.0035      81     146 ..     802     870 ..     799     878 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8.5e-07
   TIGR02172  81 slsrii..seeperlee.lakifAeeakklHatkcdtsklksakekirklieekkfvpddykeklrali 146
                 sl  ii   e p+r+++   k++Ae +k++H+  +++++lk+  e+++ +   +++ + +++ k + ++
  MMETSP1061-20121228|6895_1 802 SLKPIIrtDETPSRIQKrAYKVMAEICKRYHSFIAEPERLKEVMELMSSTSATSQVSARFMRLKCLTFV 870
                 556666224679***862569****************************99999999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.55u 0.14s 00:00:00.69 Elapsed: 00:00:00.32
# Mc/sec: 5498.17
//
Query:       MMETSP1061-20121228|6904_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2161.32
//
Query:       MMETSP1061-20121228|6901_1  [L=1291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.31
# Mc/sec: 5496.71
//
Query:       MMETSP1061-20121228|6905_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.26
# Mc/sec: 2020.45
//
Query:       MMETSP1061-20121228|6903_1  [L=781]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00045   18.1   7.3         10    4.4   0.0    7.6  9  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0         1   4.1e+03       6      24 ..     218     236 ..     217     239 .. 0.79
   2 !    4.1   0.0    0.0031        13       2      27 ..     249     274 ..     248     277 .. 0.85
   3 ?    0.5   0.1     0.044   1.8e+02       2      12 ..     305     315 ..     304     317 .. 0.84
   4 !    4.4   0.0    0.0026        10       2      17 ..     349     364 ..     348     365 .. 0.91
   5 !    4.0   0.0    0.0034        14      12      34 ..     464     486 ..     464     487 .. 0.90
   6 ?   -1.3   0.0      0.16   6.6e+02       2      12 ..     489     499 ..     488     509 .. 0.89
   7 ?   -1.0   0.0      0.13   5.5e+02       2      12 ..     570     580 ..     569     582 .. 0.90
   8 ?   -1.8   0.0      0.23   9.5e+02      18      29 ..     591     602 ..     590     608 .. 0.77
   9 ?   -1.6   0.0       0.2   8.2e+02      16      34 ..     678     697 ..     675     698 .. 0.81

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 1
   TIGR00756   6 lisglckagrveeAlelfd 24 
                 li  lc++ ++++A+ +++
  MMETSP1061-20121228|6903_1 218 LIMLLCNQLKPRDAHGILR 236
                 7778999999999988776 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0031
   TIGR00756   2 tyntlisglckagrveeAlelfdeMk 27 
                 ++ t+i+g+++  + e A+++ + M+
  MMETSP1061-20121228|6903_1 249 SFVTVINGYARTFQSENAHSVIEWMM 274
                 688*********99999999987665 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.044
   TIGR00756   2 tyntlisglck 12 
                 ++n+l+++++ 
  MMETSP1061-20121228|6903_1 305 CFNALLHAYAL 315
                 89*******86 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.0026
   TIGR00756   2 tyntlisglckagrve 17 
                 tyn+ i++ ++++++e
  MMETSP1061-20121228|6903_1 349 TYNICINAWARSKHPE 364
                 9**********99987 PP

  == domain 5    score: 4.0 bits;  conditional E-value: 0.0034
   TIGR00756  12 kagrveeAlelfdeMkergivPd 34 
                 k+++ ee l++ ++M+ ++i P+
  MMETSP1061-20121228|6903_1 464 KHRCGEEILKVVERMQGMKITPT 486
                 678889**************997 PP

  == domain 6    score: -1.3 bits;  conditional E-value: 0.16
   TIGR00756   2 tyntlisglck 12 
                 +yn+++ +l++
  MMETSP1061-20121228|6903_1 489 VYNSVLTALAE 499
                 7*****99985 PP

  == domain 7    score: -1.0 bits;  conditional E-value: 0.13
   TIGR00756   2 tyntlisglck 12 
                 t+n++++ l++
  MMETSP1061-20121228|6903_1 570 TFNIILKVLSR 580
                 9*******998 PP

  == domain 8    score: -1.8 bits;  conditional E-value: 0.23
   TIGR00756  18 eAlelfdeMker 29 
                 +A el+ eM ++
  MMETSP1061-20121228|6903_1 591 KADELLSEMDAM 602
                 899******876 PP

  == domain 9    score: -1.6 bits;  conditional E-value: 0.2
   TIGR00756  16 veeAlelfdeMker.givPd 34 
                 ++ Al l++++++  gi Pd
  MMETSP1061-20121228|6903_1 678 LRAALALMKKLRDTkGIAPD 697
                 57899999999777699998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.12s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 3123.74
//
Query:       MMETSP1061-20121228|6907_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.8    4.4  12.7       0.87    7.4   1.8    2.1  2  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   2.6    0.0098        40      30      48 ..       8      26 ..       5      40 .. 0.83
   2 ?    7.4   1.8   0.00021      0.87      24      60 ..      39      75 ..      35      77 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0098
   TIGR02209 30 nselqklqaeieklqkewn 48
                ++e++++++e+e+++++++
  MMETSP1061-20121228|6907_1  8 QQEYDEVEEEEEEQEHDYE 26
                6899************986 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00021
   TIGR02209 24 hqtrqlnselqklqaeieklqkewndLqlEvaelsrh 60
                 ++r++  e ++ ++e+++ ++e++ + + va+++++
  MMETSP1061-20121228|6907_1 39 EESRDVLDEEAETETERTEYEHENEAAAASVATETEK 75
                6789***************************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       345  (0.0841053); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1061-20121228|6908_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|6906_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1803.85
//
Query:       MMETSP1061-20121228|6911_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 981.31
//
Query:       MMETSP1061-20121228|6910_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1734.71
//
Query:       MMETSP1061-20121228|6912_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   21.5   0.0    8.9e-05   18.9   0.0    1.9  1  TIGR00575 dnlj: DNA ligase, NAD-dependent


Domain annotation for each model (and alignments):
>> TIGR00575  dnlj: DNA ligase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.2e-08   8.9e-05      86     116 ..      44      74 ..       1      82 [. 0.82

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.2e-08
   TIGR00575  86 kriekqlgekvelvvelKiDGvsvsLtYeng 116
                 +r + +  +++++v e+K+DGvs+sL+Ye g
  MMETSP1061-20121228|6912_1  44 QRSTLSSRSTISIVTEPKLDGVSLSLRYESG 74 
                 344444455899*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 620.35
//
Query:       MMETSP1061-20121228|6914_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.36    8.7  11.2       0.53    8.2   7.8    1.2  1  TIGR04135 FibroRuminTarg: Cys-rich radical SAM target, FibroRumin family


Domain annotation for each model (and alignments):
>> TIGR04135  FibroRuminTarg: Cys-rich radical SAM target, FibroRumin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   7.8   0.00013      0.53      35      52 .]      10      27 ..       6      27 .. 0.92

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00013
   TIGR04135 35 tCaCsCriskeeeddveW 52
                +C C+C +++e e+d +W
  MMETSP1061-20121228|6914_1 10 KCKCKCNCESESESDWDW 27
                89**************** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 615.95
//
Query:       MMETSP1061-20121228|6915_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 573.87
//
Query:       MMETSP1061-20121228|6909_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-124  414.7   0.0   1.4e-124  414.5   0.0    1.0  1  TIGR01810 betA: choline dehydrogenase
    3.1e-80  268.3   0.2    2.6e-56  189.4   0.1    2.0  2  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
    4.9e-05   21.0   0.3    0.00012   19.7   0.2    1.6  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    7.2e-05   19.7   0.0       0.33    7.6   0.0    3.0  3  TIGR02462 pyranose_ox: pyranose oxidase
    0.00024   18.0   0.0    0.00035   17.5   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0013   15.7   0.1     0.0019   15.2   0.1    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0016   15.4   0.1     0.0026   14.8   0.1    1.3  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0031   14.7   0.4      0.016   12.3   0.3    2.0  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0054   13.6   0.1     0.0078   13.1   0.1    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
  ------ inclusion threshold ------
       0.02   11.6   0.0      0.029   11.0   0.0    1.2  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
      0.026   11.2   0.1      0.038   10.6   0.1    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.055   10.1   0.1      0.081    9.5   0.0    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01810  betA: choline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  414.5   0.0    4e-127  1.4e-124       1     528 [.      48     590 ..      48     595 .. 0.92

  Alignments for each domain:
  == domain 1    score: 414.5 bits;  conditional E-value: 4e-127
   TIGR01810   1 dyiiiGaGsaGsvlatrlsedvsnsvlvleaGgsdyrfdlliqmpaalayplsnkrynwayetepepflnnrrveaarGkvlGGsssinGmvyvrGnaldlekwakeeGleswayadvlpyykrletsdggee.dyrGtdGpvkvrrgkadnplfealieaGveaGyektedlnGfk..qeGfGpldrtvtrGrrvsaarayldpalkrknlevrtralvdkivfegkr.atGvefkkgg......ikervkankevilsagainspkllqlsGiGdaehlkelgielkvelpGvGenlqdhlelylqq.ackkpvslypalqklkq..pviGaqwllgkkGvgasnhfeaggfvrsaeevk.ypniqyhflpv.aisydGkka......akeh..GfqvhvGsmlsksrGhvkikskdpkekpailfnylsheedkeefreairvtreilkqkaldlyrGreispGeevqtdeeidefvredaetalhpcgtckmGakddemsvvdpetrvhGleglrvvdasilprittGnlnapsimigekaadiirG 528
                 dyii G+G aG  la rl+ d++ +vlvleaG +dy+  +++++pa +     n++++w +et  e   n+r+v   rGk+lGGss  n  ++ rG a+d++ w    G+ +w+ advlp++k  ++  +g+  +++G+dG   +   k +npl + ++  G +aG    +d+n +   qeG G ++ +  +G r+s a+a++++alkrkn +vrt a+v++i+f+g++ atGv+++  g       + + +a  evi+++gai+sp+ll+ sG+G+a+hlk+ gi+++++ p vG+nlqdh    +   + kk vs+ + l+ + +  p+  +qwll+k+G+  s   + g+fvr++  vk +p++q  fl   a+  dG ++      +k+h  G+     + ++ks+G v++ s++ + kp+i   yls   d +  re i++ r++ +++   +y G+e+ pG +vqtde+ide++++   ta   +gtckmG  +d  +vv p+ +v+G++g+rv+d+s +p i  G   +p++mi+e+aa  +r 
  MMETSP1061-20121228|6909_1  48 DYIIAGGGLAGCLLADRLTADGK-KVLVLEAGSPDYT-SMIVRIPAGILRLFRNNKWDWQHETGGEKACNGRNVFLQRGKGLGGSSCTNVCLHHRGSAQDYDDW----GVPGWKAADVLPFFKASQKDMTGKSsEFHGKDGDWVMDDVKYQNPLSKRFLLVGEKAGLGTNDDFNNWSrpQEGVGRFQVSEVNGERCSGAKAFISKALKRKNCNVRTGAMVRRINFDGSKtATGVTYDLMGddtmtpFEAKLNAGGEVIVTSGAIASPQLLMCSGVGPADHLKDHGIPVVHDNPSVGKNLQDHPAAVVSFrTPKKGVSVTSKLRLFGMtnPFPIIQWLLFKTGLLTSTGCDHGAFVRTSASVKgQPDLQIRFLAArALGPDGMTTftqfrnSKNHedGYSFQSVACRAKSKGCVRLSSSNTHVKPQIDGGYLSDAADLKTIREGIKLGRQLGNRPEWGEYLGEEVFPGLDVQTDEQIDEYIKNTIHTANALTGTCKMGVGKD--AVVSPDLKVIGVNGVRVADSSTIPIIPGGQTATPTVMIAERAAAFLRS 590
                 9********************97.69**********9.99****************************************************************....6789************99999888779**************************************9875459**********************************************976489***98655355544455677889***********************************************988777516799********99865338999***********************99999769********7548888886542222224444449*****************************************************************************************************666..8******************************************99886 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.4   0.1   7.7e-59   2.6e-56       2     302 ..      48     354 ..      47     363 .. 0.85
   2 !   77.0   0.0   8.8e-25     3e-22     339     487 .]     435     589 ..     422     589 .. 0.86

  Alignments for each domain:
  == domain 1    score: 189.4 bits;  conditional E-value: 7.7e-59
   TIGR03970   2 DvlvvGaGsaGsvlaarLsedpsatvtvleaGpgyldpsrlpaqltdalrlPigaassvverygseLtde.prraaaivrGrvlGGsgavnGayfcraleaDfeawsiasWsyddvLpafraietDlDf.etelhGsaGPipvrrtaelsgisaafvaaaraaGfgeeaDlngsgpdlsaGvgavPlnvddgrrvstavayLlPalkrpnLrveaetrvvrilfsatr.avGv..evlgdgaae.....tlradrvvlcaGavesaalLllsGvGpaeqLraaGvavvldlP.vGsdtvDhPevvlpvrlek 302
                 D ++ G+G aG+ la+rL++d +++v+vleaG+   ++  +    +  lrl      ++ +++++  ++    r+  + rG+ lGGs++ n     r+ + D+++w++++W+  dvLp f+a+++D+    +e+hG++G   +  ++  +++s+ f    ++aG g ++D n+  + +  Gvg+  +   +g+r s a a++  alkr n +v++ + v+ri f++++ a Gv  +++gd +++         + v++++Ga++s++lL+ sGvGpa++L+++G++vv d P vG+++ DhP  v+ +r  k
  MMETSP1061-20121228|6909_1  48 DYIIAGGGLAGCLLADRLTAD-GKKVLVLEAGSPDYTS-MIVRIPAGILRL--FRNNKWDWQHETGGEKAcNGRNVFLQRGKGLGGSSCTNVCLHHRGSAQDYDDWGVPGWKAADVLPFFKASQKDMTGkSSEFHGKDGDWVMDDVKYQNPLSKRFLLVGEKAGLGTNDDFNNW-SRPQEGVGRFQVSEVNGERCSGAKAFISKALKRKNCNVRTGAMVRRINFDGSKtATGVtyDLMGDDTMTpfeakLNAGGEVIVTSGAIASPQLLMCSGVGPADHLKDHGIPVVHDNPsVGKNLQDHPAAVVSFRTPK 354
                 889***************997.789*******876666.233233344454..45666777666665544145677777***********************************************9985789***************************************97.5568*********************************************9864267773345555554311110334479*************************************************99988655 PP

  == domain 2    score: 77.0 bits;  conditional E-value: 8.8e-25
   TIGR03970 339 prddpklGvaLmrpksrGeirlasadpaaapviehrydssaaDrealregaalaeeLleave........astllepavkeseaswvrarlatsqhlsGsarmgaeddpaavvDarCrvrGvegLavvDtsilPaitsrGPhativmvaeraaefla 487
                 ++d +    +  r+ks+G +rl+s++ +++p+i+  y s aaD +++reg +l+++L + +e          + l+  + e+ +++++  + t+  l+G+++mg  +d  avv +  +v+Gv+g+ v+D+s +P i+        vm+aeraa+fl+
  MMETSP1061-20121228|6909_1 435 HEDGYSFQSVACRAKSKGCVRLSSSNTHVKPQIDGGYLSDAADLKTIREGIKLGRQLGNRPEwgeylgeeVFPGLDVQTDEQIDEYIKNTIHTANALTGTCKMGVGKD--AVVSPDLKVIGVNGVRVADSSTIPIIPGGQTATPTVMIAERAAAFLR 589
                 56666666677899*********************************************998766655433455788999999*********************8655..9**************************87666679**********85 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.2   3.6e-07   0.00012       1      32 [.      47      78 ..      47      82 .. 0.95

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.6e-07
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekk 32
                yD ++ G+G aG+ +A rl   G +Vl+le  
  MMETSP1061-20121228|6909_1 47 YDYIIAGGGLAGCLLADRLTADGKKVLVLEAG 78
                9****************************975 PP

>> TIGR02462  pyranose_ox: pyranose oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0   0.00096      0.33       1      55 [.      47     107 ..      47     112 .. 0.84
   2 !    7.1   0.0    0.0014      0.48     252     318 ..     275     344 ..     241     351 .. 0.61
   3 ?    1.0   0.0     0.099        34     482     529 ..     528     577 ..     524     590 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00096
   TIGR02462   1 vdvfiaGsGPigatyakllvdaglkvvmveiGaadsflkv......viGahkkneieyqkd 55 
                 +d +iaG G  g+  a +l   g kv+++e G+ d ++ +      +    + n+ ++q +
  MMETSP1061-20121228|6909_1  47 YDYIIAGGGLAGCLLADRLTADGKKVLVLEAGSPDYTSMIvripagILRLFRNNKWDWQHE 107
                 799********************************99666555555666777777777765 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0014
   TIGR02462 252 veaalvrdllaserdkkivak.sfvlaaGavataqilvnsgisslg.erdaarpp.sllpalGryiteqs 318
                 v++ l+ d   +  + k+ a    ++++Ga+a++q+l+ sg++ +   +d  +p  +  p++G+ + + +
  MMETSP1061-20121228|6909_1 275 VTYDLMGDDTMTPFEAKLNAGgEVIVTSGAIASPQLLMCSGVGPADhLKDHGIPVvHDNPSVGKNLQDHP 344
                 444444444444344555554146789***************9555355555553123577777766655 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.099
   TIGR02462 482 alhlaGttriGldeqktvadtdskvfnfknlyvgGnGviet...afaanPt 529
                 a  l+Gt ++G+ ++ +v+ +d kv + + + v+ + +i+    + +a Pt
  MMETSP1061-20121228|6909_1 528 ANALTGTCKMGVGKD-AVVSPDLKVIGVNGVRVADSSTIPIipgGQTATPT 577
                 5679********876.68899*************99987651114455555 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     1e-06   0.00035       2      31 ..      47      76 ..      46      79 .. 0.96

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1e-06
   TIGR00031  2 fdyiivGaGlsGivlaeilaklnkrvlvve 31
                +dyii G Gl+G +la+ l+  +k+vlv+e
  MMETSP1061-20121228|6909_1 47 YDYIIAGGGLAGCLLADRLTADGKKVLVLE 76
                9****************************9 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   5.5e-06    0.0019       3      30 ..      50      77 ..      48      81 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 5.5e-06
   TIGR03197  3 avIGaGiAgaalalsLarrGvqvtllek 30
                ++ G+G+Ag++la +L++ G +v +le+
  MMETSP1061-20121228|6909_1 50 IIAGGGLAGCLLADRLTADGKKVLVLEA 77
                899**********************997 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   7.5e-06    0.0026       1      32 [.      48      79 ..      48      84 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 7.5e-06
   TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaap 32
                D i+ GgGlAg+++A +l++ g +v ++ea  
  MMETSP1061-20121228|6909_1 48 DYIIAGGGLAGCLLADRLTADGKKVLVLEAGS 79
                889*************************9875 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.3   4.8e-05     0.016       2      30 ..      50      78 ..      49      80 .. 0.95
   2 ?   -0.5   0.0      0.38   1.3e+02     216     244 ..     246     274 ..     241     289 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.8e-05
   TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEar 30
                ++ GgGlAG+  A +L+++G +v +lEa+
  MMETSP1061-20121228|6909_1 50 IIAGGGLAGCLLADRLTADGKKVLVLEAG 78
                699************************97 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.38
   TIGR03467 216 rylesrggevrlgtrvreleasaggiral 244
                 ++l+++  +vr+g+ vr+++ ++ + ++ 
  MMETSP1061-20121228|6909_1 246 KALKRKNCNVRTGAMVRRINFDGSKTATG 274
                 7899****************999886654 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   2.3e-05    0.0078       1      32 [.      47      78 ..      47      83 .. 0.96

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.3e-05
   TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiiaaG 32
                +D ii GgGlaG   a rl+  Gkk++++ aG
  MMETSP1061-20121228|6909_1 47 YDYIIAGGGLAGCLLADRLTADGKKVLVLEAG 78
                9****************************998 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   8.6e-05     0.029       6      49 ..      50      95 ..      47     109 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 8.6e-05
   TIGR02360  6 aiigaGpsGlllgqllhkaGidavilerksrdyv..lgriraGvle 49
                 i g+G +G ll++ l   G ++++le  s+dy   + ri aG+l 
  MMETSP1061-20121228|6909_1 50 IIAGGGLAGCLLADRLTADGKKVLVLEAGSPDYTsmIVRIPAGILR 95
                578999***************************62257999**995 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   0.00011     0.038       1      33 [.      48      79 ..      48      91 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00011
   TIGR01988  1 divIvGgGlvGlalAlaLassadlkvalveaka 33
                d +I+GgGl+G  lA +L +++ +kv+++ea  
  MMETSP1061-20121228|6909_1 48 DYIIAGGGLAGCLLADRLTADG-KKVLVLEAGS 79
                779****************888.9****99875 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00024     0.081       1      35 [.      48      81 ..      48      87 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00024
   TIGR01984  1 dviivGgglvGlslAlaLsrksklkialieaksae 35
                d ii Gggl+G +lA  L +++  k+ ++ea s++
  MMETSP1061-20121228|6909_1 48 DYIIAGGGLAGCLLADRLTADG-KKVLVLEAGSPD 81
                679*******************.9******98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.39u 0.12s 00:00:00.51 Elapsed: 00:00:00.47
# Mc/sec: 1735.52
//
Query:       MMETSP1061-20121228|6917_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 491.29
//
Query:       MMETSP1061-20121228|6918_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1531.07
//
Query:       MMETSP1061-20121228|6913_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2343.94
//
Query:       MMETSP1061-20121228|6922_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-31  106.3   0.0    7.3e-31  105.4   0.0    1.3  1  TIGR00071 hisT_truA: tRNA pseudouridine synthase A


Domain annotation for each model (and alignments):
>> TIGR00071  hisT_truA: tRNA pseudouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   1.8e-34   7.3e-31      69     217 ..       9     162 ..       5     170 .. 0.92

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 1.8e-34
   TIGR00071  69 eiedkklvaklnallpedirvkalekVnkkFdaRfsassrkYryilnnkkyrsaldlekleaaakellGkhdFsnFtkakdskeksairtikkikvse.........seeliilkiiGssFllhqvRkivaalvlvgreklpveevsklleqkkrkli 217
                 e+++   ++ ln+ lp++ir+ ++ +V ++F aRfsa sr Yry++  +    ++++++++     l+GkhdF+n++k + +k  +  r i++++v +         +ee+ +lki+G++Fl+hq+R+i ++++++g++ ++++++ +ll+ kk+   
  MMETSP1061-20121228|6922_1   9 EMNEYSYAKILNNILPPSIRILGWTPVTEDFSARFSAGSRTYRYFFCRR----RMNMDAIRDGLIRLVGKHDFRNLCKMDVEKVYNFERVIHSAEVVHvheqgtittNEEICYLKIVGQAFLWHQIRCIAEVIFMIGNGFESPSIITELLDIKKHPGK 162
                 4555566677*************************************99....9**************************99999999999999998888899999999999*****************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1515.75
//
Query:       MMETSP1061-20121228|6919_1  [L=951]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-16   57.2   0.0    2.4e-16   56.6   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
      0.011   13.0   0.0      0.022   12.0   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.6   0.0   1.2e-19   2.4e-16      84     184 ..     552     648 ..     547     653 .. 0.91

  Alignments for each domain:
  == domain 1    score: 56.6 bits;  conditional E-value: 1.2e-19
   TIGR03903  84 LmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLt 184
                 L++    a+a  h++ v+hRDLkP+n+       + + kv DF ++ +lp  ++ + ++l r t  +GsP Y +Pe  Rgep    +D+Ya GL+  e L 
  MMETSP1061-20121228|6919_1 552 LLIDLCSAVAFLHSQKVLHRDLKPDNVGFDR---TGTLKVFDFDVARVLPPHQQ-EPNQLFRLTKKVGSPRYMSPEVARGEPYNESADVYAIGLLAYEVLN 648
                 67778889******************98755...55689***********9988.999*************************************999885 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.1e-05     0.022      94     138 ..     551     596 ..     542     624 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.1e-05
   TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                 +ll ++  +v+ lH+++++h Dl + N+ + ++++l + Df  +++
  MMETSP1061-20121228|6919_1 551 NLLIDLCSAVAFLHSQKVLHRDLKPDNVGFdRTGTLKVFDFDVARV 596
                 677788899*******************995577788899988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (951 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.41
# Mc/sec: 3061.50
//
Query:       MMETSP1061-20121228|6921_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-42  142.1   0.7    4.4e-40  135.7   0.5    2.4  1  TIGR00099 Cof-subfamily: Cof-like hydrolase
    3.9e-26   89.8   0.0    4.2e-16   57.0   0.1    2.1  2  TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
    2.4e-23   80.9   0.0    6.1e-15   53.5   0.0    2.2  2  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
    3.7e-21   74.0   0.2      9e-11   40.1   0.0    2.4  2  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
    2.9e-11   41.2   0.0    3.5e-05   21.3   0.0    2.2  2  TIGR02471 sucr_syn_bact_C: sucrose phosphate synthase, sucrose phosphatase-like domain
    7.9e-11   39.6   0.0    1.4e-05   22.4   0.0    2.1  2  TIGR01486 HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
    1.5e-10   39.1   0.2    4.3e-08   31.1   0.0    2.5  2  TIGR01670 YrbI-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
    2.8e-09   34.9   0.1    0.00018   19.2   0.0    2.2  2  TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
    5.7e-09   33.7   0.1    1.8e-05   22.3   0.0    2.1  2  TIGR01485 SPP_plant-cyano: sucrose phosphatase
    1.1e-08   32.7   0.0    3.9e-08   31.0   0.0    1.8  2  TIGR00338 serB: phosphoserine phosphatase SerB
    6.9e-08   30.5   0.0     0.0016   16.4   0.0    2.7  3  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    2.8e-06   25.4   0.0    9.3e-05   20.5   0.0    2.2  2  TIGR02461 osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
    1.4e-05   21.5   0.4    0.00034   17.0   0.2    2.1  2  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    1.5e-05   22.6   0.2     0.0007   17.2   0.0    2.8  3  TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
    0.00023   18.6   0.4       0.29    8.5   0.0    3.1  3  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
    0.00043   17.1   0.1     0.0027   14.4   0.1    1.9  2  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    0.00067   17.7   0.0     0.0024   15.9   0.0    1.7  2  TIGR02726 phenyl_P_delta: phenylphosphate carboxylase, delta subunit
    0.00089   16.0   0.0      0.007   13.1   0.0    1.9  2  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
     0.0017   15.9   0.0       0.14    9.6   0.0    2.3  2  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
     0.0025   14.4   0.3      0.013   12.0   0.0    1.9  2  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
     0.0033   16.1   0.1      0.012   14.2   0.0    1.9  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
  ------ inclusion threshold ------
      0.017   13.0   0.1       0.85    7.4   0.0    3.0  3  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
      0.024   10.2   0.1      0.039    9.5   0.0    1.3  1  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type


Domain annotation for each model (and alignments):
>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.7   0.5   2.5e-42   4.4e-40       1     255 [.       8     303 ..       8     304 .. 0.74

  Alignments for each domain:
  == domain 1    score: 135.7 bits;  conditional E-value: 2.5e-42
   TIGR00099   1 lifiDlDGTLlskdkeispetkealaklrekGikvvlaTGRsykevkeilkelgld...plivanGa.........avvd.engk...eilykkpldldlveeilnilkklgldvilysddsiyfsknknei..feiekkklaepkke.vvknq.....lledddlkillllleaedldkleealkk............eeleeelsv.....vsssedsieitakgvsKgsalqslaeklgislenviaiGDseNDieMleaagvgvamgnaneelkaladyvtds.ndedgvaka 255
                 ++++DlDGTLl++++++ +e  + l+ l + G ++++aTGR   +v +i k+l l    p+++ nGa         a +d +n++   ++l+ +p +++ v + l+ +k+lg+ v +y dd+iy++  ++ +  +  +++ l+ + ++ v+++q      + ++  ++ll+ +e+e++  ++  + k            ++ +++l           ++++ei++++v+Kg +l+s+ +kl ++++nviaiGD+ NDie l++ g+g+am na+++lk++a+y+++  nde+gv+k 
  MMETSP1061-20121228|6921_1   8 MVALDLDGTLLTSKHQLADEQADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLALPeptPVVCSNGArgfllsydhA-CDaDNENkdqKELFYTPVSREAVTKSLELAKELGYFVQYYLDDGIYANPVTDTHhqMVKDYERLTSSSVQvVTDFQqfigsEDDSKLPSKLLIRCEKEEFAACHPSFVKllypttvegdysKGMMDRLAHivaayNDDLDWFLEILNPDVNKGFGLRSMCQKLEVAMSNVIAIGDGTNDIEFLQISGLGIAMNNAHDSLKKVASYTMEWtNDEHGVMKT 303
                 689***************************************************9999999****994443222211.1112222678************************5555555555665544443300444444444444440444448*9984444444566666666666666666555555533332333222222222110023445789******************************************************************99******986 PP

>> TIGR01482  SPP-subfamily: sucrose-phosphate phosphatase subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   2.2e-10   3.9e-08       1     103 [.       9     111 ..       9     153 .. 0.74
   2 !   57.0   0.1   2.4e-18   4.2e-16     141     206 ..     227     292 ..     199     307 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 2.2e-10
   TIGR01482   1 iasDlDgTlvdeeralnlsaleairkaesvyillvlvtGrsvkfakelaklig..tpdivilenGg...eilyneglddkflenleekwerdevvkktesfeelklqy 103
                 +a DlDgTl   +++l  ++   +r   + +  l ++tGr  ++++++ k++   +p++v+++nG+   +++y+ + d   +++ +++ +        +s+e+++   
  MMETSP1061-20121228|6921_1   9 VALDLDGTLLTSKHQLADEQADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLAlpEPTPVVCSNGArgfLLSYDHACDADNENKDQKELFYTP-----VSREAVTKSL 111
                 799*****999999999999999999999****************9999988777*********98222355555555554444444444444.....4444444444 PP

  == domain 2    score: 57.0 bits;  conditional E-value: 2.4e-18
   TIGR01482 141 ldilpkgvdKGkavkylkeklgikpeeilviGDSeNDidlFevavfkvavanAqeelkewadlvte 206
                 l+il+++v+KG++++ +++kl +  +++++iGD+ NDi+  ++++ ++a+ nA++ lk++a +  e
  MMETSP1061-20121228|6921_1 227 LEILNPDVNKGFGLRSMCQKLEVAMSNVIAIGDGTNDIEFLQISGLGIAMNNAHDSLKKVASYTME 292
                 589********************************************************9987543 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.2e-08   2.1e-06       2      67 ..       7      74 ..       6     116 .. 0.83
   2 !   53.5   0.0   3.4e-17   6.1e-15     139     207 ..     227     295 ..     207     304 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.2e-08
   TIGR01487  2 klvavDiDgTltdknrlislraieairklekkGikvvlvtGnevkfvealavligvsg..avvaEnGg 67
                ++va D+DgTl   +  +  +  + +r l+k G+++ ++tG+  + v+ + + + + +  +vv+ nG+
  MMETSP1061-20121228|6921_1  7 RMVALDLDGTLLTSKHQLADEQADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLALPEptPVVCSNGA 74
                579*******988888888888899********************99999888876542289****96 PP

  == domain 2    score: 53.5 bits;  conditional E-value: 3.4e-17
   TIGR01487 139 vhilkkgvdKgvgvkklkellGlkkeevaaiGDsenDldlFrvagfkvavanAddelKeiaDlvtenes 207
                 + il+++v+Kg+g++ ++++l +   +v+aiGD+ nD++  ++ g+++a+ nA+d+lK++a +  e  +
  MMETSP1061-20121228|6921_1 227 LEILNPDVNKGFGLRSMCQKLEVAMSNVIAIGDGTNDIEFLQISGLGIAMNNAHDSLKKVASYTMEWTN 295
                 5699*********************************************************99877544 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.1   0.0     5e-13     9e-11       1      68 [.       8      76 ..       8     116 .. 0.89
   2 !   31.7   0.1   1.9e-10   3.3e-08     171     221 .]     226     276 ..     202     276 .. 0.94

  Alignments for each domain:
  == domain 1    score: 40.1 bits;  conditional E-value: 5e-13
   TIGR01484  1 llffDlDgTLldpklelseelieaLerlrealgvkvvivTGRslaeikellkqlnl..elpliaengali 68
                ++++DlDgTLl++k++l +e   +L  l+++ g+++ i+TGR   +++++ k+l l  + p++++nga  
  MMETSP1061-20121228|6921_1  8 MVALDLDGTLLTSKHQLADEQADYLRTLHKT-GFRLCIATGRAAPSVYDIVKKLALpePTPVVCSNGARG 76
                699****************************.9***********************99999999999875 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 1.9e-10
   TIGR01484 171 llevlpagvdKgkalqalleelnlkkeeilafGDsgNDeemlevaglavav 221
                 +le+l  +v+Kg++l++  ++l +  ++++a+GD++ND+e l++ gl++a+
  MMETSP1061-20121228|6921_1 226 FLEILNPDVNKGFGLRSMCQKLEVAMSNVIAIGDGTNDIEFLQISGLGIAM 276
                 689999*****************************************9998 PP

>> TIGR02471  sucr_syn_bact_C: sucrose phosphate synthase, sucrose phosphatase-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.9e-07   3.5e-05       2      79 ..       9      91 ..       8     128 .. 0.75
   2 !   18.0   0.0   1.9e-06   0.00034     147     213 ..     223     289 ..     207     309 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.9e-07
   TIGR02471  2 iltdldntLlgddegLae.fvellr.tagkdvsfGiatGrslesalkllkklklPsPdvliaavGte...iyygeelrsdkaW 79
                + +dld tLl  ++ La+   ++lr  ++    + iatGr+  s   ++kkl lP+P  ++++ G+    + y +   +d+  
  MMETSP1061-20121228|6921_1  9 VALDLDGTLLTSKHQLADeQADYLRtLHKTGFRLCIATGRAAPSVYDIVKKLALPEPTPVVCSNGARgflLSYDHACDADNEN 91
                568********99999972568999556777999***********************97777666542225565555555554 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 1.9e-06
   TIGR02471 147 leafLdvlPlraskelalrylslrwglpleqlLvagdsgndeellrGdtlgvvvgnhdpeLekLrel 213
                 l++fL++l     k+  lr ++ ++++ + +++ +gd  nd e+l+ + lg+ + n  + L+k+++ 
  MMETSP1061-20121228|6921_1 223 LDWFLEILNPDVNKGFGLRSMCQKLEVAMSNVIAIGDGTNDIEFLQISGLGIAMNNAHDSLKKVASY 289
                 68******************************************************88889888765 PP

>> TIGR01486  HAD-SF-IIB-MPGP: mannosyl-3-phosphoglycerate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     8e-08   1.4e-05       2      68 ..       9      77 ..       8     124 .. 0.88
   2 !   15.4   0.0   1.1e-05    0.0019     171     248 ..     229     299 ..     225     308 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 8e-08
   TIGR01486  2 iftDlDgtLldehsYdlgpAkevlerlqelgipvilctSKtaaEveelrkelgle..dpfivEnGaaiy 68
                +  DlDgtLl +++  +++ +  l+ l++ g+++ + t + a  v  + k+l l+  +p +  nGa  +
  MMETSP1061-20121228|6921_1  9 VALDLDGTLLTSKHQLADEQADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLALPepTPVVCSNGARGF 77
                779********9998999999*********************************99999******9755 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.1e-05
   TIGR01486 171 vlgaesdKGkAvnalkqlykekekaikvvglGDspnDlpllevvdlavvvkgkdgeskslkeleegelllapaegpeg 248
                 +l+ +++KG  +  + q+++       v+++GD+ nD+  l+ + l +  ++    + slk++ ++ +  +++e+  g
  MMETSP1061-20121228|6921_1 229 ILNPDVNKGFGLRSMCQKLEVA--MSNVIAIGDGTNDIEFLQISGLGIAMNN---AHDSLKKVASYTMEWTNDEH--G 299
                 5666789999999999999887..899*********************9995...55667775545565555554..4 PP

>> TIGR01670  YrbI-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.017         3      37      66 ..      32      61 ..       7      64 .. 0.90
   2 !   31.1   0.0   2.4e-10   4.3e-08      80     144 ..     239     303 ..     211     312 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.017
   TIGR01670 37 iklllklgikvaiitGrdaklvekrlkelg 66
                +++l k+g ++ i tGr a+ v + +k+l 
  MMETSP1061-20121228|6921_1 32 LRTLHKTGFRLCIATGRAAPSVYDIVKKLA 61
                578999******************999986 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 2.4e-10
   TIGR01670  80 ifeeileklalkdeevafiGddlvdkevlekvGlsvavkdaheelrkvadyvtrkkGGkgavrev 144
                   + + +kl+++ ++v +iGd  +d+e l+  Gl +a+++ah+ l+kva y ++    +  v + 
  MMETSP1061-20121228|6921_1 239 GLRSMCQKLEVAMSNVIAIGDGTNDIEFLQISGLGIAMNNAHDSLKKVASYTMEWTNDEHGVMKT 303
                 567889*********************************************98876665555544 PP

>> TIGR02463  MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     1e-06   0.00018       2      64 ..       9      74 ..       8      94 .. 0.87
   2 !   13.7   0.0   4.8e-05    0.0086     165     212 ..     226     273 ..     210     277 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1e-06
   TIGR02463  2 vvsDlDGtLldhsydwq.pAaetlkrLqeagvPvilctsktaaEvealrkelglq..dPyivEnGa 64
                v  DlDGtLl  +++++   a+ l++L+++g  + ++t + a  v  + k+l l    P +  nGa
  MMETSP1061-20121228|6921_1  9 VALDLDGTLLTSKHQLAdEQADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLALPepTPVVCSNGA 74
                667********777775156789*******************************86788999**98 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 4.8e-05
   TIGR02463 165 lsHllgaeaskgkavnalkkalnekdvkvlgLGDspnDlpLLevaDla 212
                 +  +l+ +++kg+ +  + ++l+    +v+++GD+ nD+  L+++ l 
  MMETSP1061-20121228|6921_1 226 FLEILNPDVNKGFGLRSMCQKLEVAMSNVIAIGDGTNDIEFLQISGLG 273
                 6678999***********************************987665 PP

>> TIGR01485  SPP_plant-cyano: sucrose phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00082      0.15       4      73 ..       9      75 ..       6     117 .. 0.76
   2 !   22.3   0.0   9.9e-08   1.8e-05     159     218 ..     227     285 ..     213     304 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00082
   TIGR01485  4 lvsdldetlvdrddgdnsallrlnallearrredsllvystGrsyslykelrkqkpllePdilvlsvGse 73
                +  dld tl+  +++ + a ++ + l   +++ +  l  +tGr+  +  ++ k+ +l eP  +v s G+ 
  MMETSP1061-20121228|6921_1  9 VALDLDGTLL--TSKHQLADEQADYLRTLHKTGF-RLCIATGRAAPSVYDIVKKLALPEPTPVVCSNGAR 75
                5569*****9..5555666565555555566666.9*****************************99976 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 9.9e-08
   TIGR01485 159 ldilPqgadkgqalqylleklkiepsqtlvCGdsGndielfeisdvrGvivsnaqeellq 218
                 l+il    +kg  l+ + +kl+++ s+ +  Gd  ndie+++i +  G+ ++na++ l +
  MMETSP1061-20121228|6921_1 227 LEILNPDVNKGFGLRSMCQKLEVAMSNVIAIGDGTNDIEFLQI-SGLGIAMNNAHDSLKK 285
                 57888899***********************************.778********98854 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.1   3.8e+02      91     123 ..      29      61 ..       7      70 .. 0.69
   2 !   31.0   0.0   2.2e-10   3.9e-08     153     208 ..     236     292 ..     228     302 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.1
   TIGR00338  91 eelvkkLkekgykvaviSGgFdlvaeklkekLg 123
                  +  ++L++ g+++ ++ G     +  + +kL 
  MMETSP1061-20121228|6921_1  29 ADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLA 61 
                 556778888888888888866655555555555 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 2.2e-10
   TIGR00338 153 kaktllkllekegislektvavGDGanDlsmikaAglgiaf.nakpvlkekadivie 208
                 k+  l ++++k ++ + +++a+GDG+nD++ ++  glgia  na   lk++a  ++e
  MMETSP1061-20121228|6921_1 236 KGFGLRSMCQKLEVAMSNVIAIGDGTNDIEFLQISGLGIAMnNAHDSLKKVASYTME 292
                 7778999*********************************8358999**99998865 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.8e-06    0.0016       1      51 [.       7      49 ..       7      85 .. 0.77
   2 ?   -3.2   0.0       9.6   1.7e+03      93     117 ..     132     156 ..     106     160 .. 0.67
   3 !   11.3   0.0   0.00033     0.059      99     133 ..     240     272 ..     211     279 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 8.8e-06
   TIGR01662  1 klvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqs 51
                ++v lDlDgtL          ++ +l++e  d l++l+k G ++ i+t++ 
  MMETSP1061-20121228|6921_1  7 RMVALDLDGTLL--------TSKHQLADEQADYLRTLHKTGFRLCIATGRA 49
                5799********........3345667899******************998 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 9.6
   TIGR01662  93 Kpktgmleealkrlneidakesvvv 117
                  p t +  +++k++ +++++ + vv
  MMETSP1061-20121228|6921_1 132 NPVTDTHHQMVKDYERLTSSSVQVV 156
                 4677777778888877777766666 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00033
   TIGR01662  99 leealkrlneidakesvvvGDavltDleaakrvGl 133
                 l++++++l e+ +++++ +GD   +D+e+ ++ Gl
  MMETSP1061-20121228|6921_1 240 LRSMCQKL-EVAMSNVIAIGD-GTNDIEFLQISGL 272
                 689*****.8***********.89*****999997 PP

>> TIGR02461  osmo_MPG_phos: mannosyl-3-phosphoglycerate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   5.2e-07   9.3e-05       2     118 ..       9     126 ..       8     158 .. 0.84
   2 ?    3.0   0.0      0.11        20     198     220 ..     248     270 ..     230     277 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 5.2e-07
   TIGR02461   2 iftDlDgTLld.etyeagpArevleelkdkglevvfvssKtraEqeeyreelgvkdp..fivEnGgaiyiPrgyfalpveagrevgnyevieLgvpvkeiraaLkeieaeaGlslksygd 118
                 + +DlDgTLl  ++  a++  + l+ l++ g+++   + ++   +    ++l +++p  ++  nG+  ++ +   a++ + ++++ + e     v+ + + + L+ +++  G ++++y d
  MMETSP1061-20121228|6921_1   9 VALDLDGTLLTsKHQLADEQADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLALPEPtpVVCSNGARGFLLSYDHACDAD-NENKDQKELFYTPVSREAVTKSLELAKE-LGYFVQYYLD 126
                 568********6667789999*********************************9887799******9999977777776.4555555666667778889999987776.9988888865 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.11
   TIGR02461 198 rlgaivtvglGDsenDlplleav 220
                 ++    ++++GD++nD+ +l+  
  MMETSP1061-20121228|6921_1 248 EVAMSNVIAIGDGTNDIEFLQIS 270
                 45667789*********999865 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.047       8.4     305     364 ..       5      61 ..       1      63 [. 0.80
   2 !   17.0   0.2   1.9e-06   0.00034     384     411 ..     250     277 ..     242     285 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.047
   TIGR01494 305 glrtlavaskeellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelg 364
                 ++r++a+  +     ll+ + +l ++ ++ +++l+k g ++ + TG    ++  i k+l 
  MMETSP1061-20121228|6921_1   5 AFRMVALDLDG---TLLTSKHQLADEQADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLA 61 
                 55666666653...46678999************************98888888888775 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 1.9e-06
   TIGR01494 384 kgevvamiGDGvNDapALkaAdVGiais 411
                 +   v++iGDG+ND   L+ +  Gia++
  MMETSP1061-20121228|6921_1 250 AMSNVIAIGDGTNDIEFLQISGLGIAMN 277
                 5578***********************7 PP

>> TIGR01491  HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.44        79       4      17 ..       6      19 ..       2      24 .. 0.79
   2 ?    0.6   0.0      0.46        82      80     104 ..      23      47 ..      19      62 .. 0.84
   3 !   17.2   0.0   3.9e-06    0.0007     147     196 ..     235     282 ..     226     288 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.44
   TIGR01491  4 ikLvifDldGtLte 17
                 ++v+ DldGtL  
  MMETSP1061-20121228|6921_1  6 FRMVALDLDGTLLT 19
                6789*******975 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.46
   TIGR01491  80 klrdeaeevvrlLkekGlktavvsg 104
                 +l de  + +r+L++ G++  + +g
  MMETSP1061-20121228|6921_1  23 QLADEQADYLRTLHKTGFRLCIATG 47 
                 577899999***********99987 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 3.9e-06
   TIGR01491 147 kkgiavkrlkseLnaskeetvavGDskedasifevadlaialgdegeade 196
                 +kg  ++++ ++L++++ +++a+GD  +d   +++++l ia+++   +d 
  MMETSP1061-20121228|6921_1 235 NKGFGLRSMCQKLEVAMSNVIAIGDGTNDIEFLQISGLGIAMNN--AHDS 282
                 789999************************************94..4444 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.026       4.6       1      16 [.       9      24 ..       9      28 .. 0.84
   2 ?    2.2   0.0      0.13        24      89     128 ..      27      66 ..      23      73 .. 0.83
   3 !    8.5   0.0    0.0016      0.29     147     182 ..     240     275 ..     233     311 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.026
   TIGR01449  1 vlfDLDGtLvdsAPdl 16
                v++DLDGtL+ s  +l
  MMETSP1061-20121228|6921_1  9 VALDLDGTLLTSKHQL 24
                89********997665 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.13
   TIGR01449  89 gveaaleaLrakGlrlglvtnkPealarplLellglakyl 128
                   ++ l+ L+  G+rl + t +  + +  +++ l l +  
  MMETSP1061-20121228|6921_1  27 EQADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLALPEPT 66 
                 567899****************999999999888776655 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0016
   TIGR01449 147 LllaaerlgvepaqmvyvGDsevDiaaArAAGlpsv 182
                 L+  +++l+v+  +++ +GD ++Di+  +  Gl ++
  MMETSP1061-20121228|6921_1 240 LRSMCQKLEVAMSNVIAIGDGTNDIEFLQISGLGIA 275
                 899**********************99998888665 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.35        62     383     426 ..      19      62 ..       8      69 .. 0.86
   2 !   14.4   0.1   1.5e-05    0.0027     450     485 ..     251     285 ..     242     297 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.35
   TIGR01525 383 aleDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgi 426
                 + + +l +e ++ ++ L+k+g ++++ tG  + ++  + k+l +
  MMETSP1061-20121228|6921_1  19 TSKHQLADEQADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLAL 62 
                 566788899999*****9999********999999999999875 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 1.5e-05
   TIGR01525 450 egkkvamvGDGiNDApALaaAdvGiamgsgsdvaie 485
                  + +v+ +GDG ND   L  + +Giam+++ d  ++
  MMETSP1061-20121228|6921_1 251 MS-NVIAIGDGTNDIEFLQISGLGIAMNNAHDSLKK 285
                 33.69***********************88776555 PP

>> TIGR02726  phenyl_P_delta: phenylphosphate carboxylase, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       3.4   6.1e+02       7      29 ..       6      28 ..       2      41 .. 0.80
   2 !   15.9   0.0   1.3e-05    0.0024      89     156 ..     242     310 ..     234     316 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 3.4
   TIGR02726  7 iklvildvdgvmtdgrivindeg 29
                 ++v ld+dg +   +  + de 
  MMETSP1061-20121228|6921_1  6 FRMVALDLDGTLLTSKHQLADEQ 28
                578999***99988888888775 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 1.3e-05
   TIGR02726  89 qmleemnisdaevcyvgddlvdlsmmkrvglavavgdavadvkevaayvtt.argghgavrevaelilk 156
                  m ++++++ ++v  +gd   d+ +++  gl +a+ +a   +k+va+y    +   hg ++ + +l +k
  MMETSP1061-20121228|6921_1 242 SMCQKLEVAMSNVIAIGDGTNDIEFLQISGLGIAMNNAHDSLKKVASYTMEwTNDEHGVMKTLEDLKMK 310
                 5888999999**************************************865267889999999888766 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.24        43     364     407 ..      18      61 ..       5      67 .. 0.86
   2 !   13.1   0.0   3.9e-05     0.007     426     468 ..     249     291 ..     242     311 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.24
   TIGR01511 364 laledelkpeakevieaLkkrgievvlltGDnekaakavAkelg 407
                 l+ + +l  e ++ +++L+k+g ++++ tG  +  +  + k+l+
  MMETSP1061-20121228|6921_1  18 LTSKHQLADEQADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLA 61 
                 55677899999999****************99999999988887 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 3.9e-05
   TIGR01511 426 lqekkvamvGDGiNDapaLaaadvgiaigagtdvaieaadvvl 468
                 ++ ++v+ +GDG+ND   L  + +gia++++ d  ++ a +++
  MMETSP1061-20121228|6921_1 249 VAMSNVIAIGDGTNDIEFLQISGLGIAMNNAHDSLKKVASYTM 291
                 4567899************************998777777665 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00081      0.14      71     114 ..      19      62 ..      11      72 .. 0.86
   2 ?    4.0   0.0      0.04       7.1     137     167 ..     240     270 ..     205     284 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00081
   TIGR01454  71 agevevfegvpellaelradglgtaiatgksgprarsllealgl 114
                 + + ++ ++ ++ l +l ++g+++ iatg++ p    ++++l l
  MMETSP1061-20121228|6921_1  19 TSKHQLADEQADYLRTLHKTGFRLCIATGRAAPSVYDIVKKLAL 62 
                 566778889999*********************99999988877 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.04
   TIGR01454 137 vrealdlldvaaeaavmvgdalidlasaraa 167
                 +r   ++l+va  +++ +gd + d+   + +
  MMETSP1061-20121228|6921_1 240 LRSMCQKLEVAMSNVIAIGDGTNDIEFLQIS 270
                 6778899***************999765554 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.29        51     319     359 ..      17      56 ..       2      61 .. 0.75
   2 !   12.0   0.0   7.4e-05     0.013     383     413 ..     251     280 ..     245     298 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.29
   TIGR01512 319 lialsDevredaaeaiaeLkklgvkklvlltGDreaaaekv 359
                 l++ + ++ ++ a+ ++ L+k g  +l++ tG  + ++  +
  MMETSP1061-20121228|6921_1  17 LLTSKHQLADEQADYLRTLHKTGF-RLCIATGRAAPSVYDI 56 
                 556677889999999999999995.8899999777666665 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 7.4e-05
   TIGR01512 383 lkevamvGDGiNDapaLaaAdvgiamGasgs 413
                 +++v+ +GDG ND + L  + +giam  ++ 
  MMETSP1061-20121228|6921_1 251 MSNVIAIGDGTNDIEFLQISGLGIAMN-NAH 280
                 56899*********************9.434 PP

>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.9e-05     0.012       2      63 ..       8      54 ..       7      63 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.9e-05
   TIGR01681  2 vivfDlDnTLwtdeedvvkedpiedieltevtikeirdvLqelkknGvllalaSknddeeva 63
                ++++DlD+TL t + ++  e+                d L +l k G+ l++a+ + +++v 
  MMETSP1061-20121228|6921_1  8 MVALDLDGTLLTSKHQLADEQ---------------ADYLRTLHKTGFRLCIATGRAAPSVY 54
                79***********66555555...............5****************999777664 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.62   1.1e+02       2      11 ..       9      18 ..       8      35 .. 0.83
   2 ?    0.7   0.0      0.56        99      81     116 ..      31      69 ..      19     106 .. 0.75
   3 ?    7.4   0.0    0.0048      0.85     159     175 ..     252     268 ..     230     270 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.62
   TIGR01488  2 aifDfDgTLt 11
                +++D+DgTL 
  MMETSP1061-20121228|6921_1  9 VALDLDGTLL 18
                789*****96 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.56
   TIGR01488  81 likwlkekGiklvivSggldflveklaeklgidk...vf 116
                  +++l + G++l+i +g +   v+ +  kl + +   v+
  MMETSP1061-20121228|6921_1  31 YLRTLHKTGFRLCIATGRAAPSVYDIVKKLALPEptpVV 69 
                 456788999999999999999999999999988855432 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0048
   TIGR01488 159 keiiavGDsvnDlpllk 175
                  ++ia+GD++nD+++l+
  MMETSP1061-20121228|6921_1 252 SNVIAIGDGTNDIEFLQ 268
                 589***********997 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00022     0.039     589     642 ..     253     306 ..     241     316 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00022
   TIGR01522 589 vvamtGdGvndapalkladiGvamGrtGtdvakeaad.miltdddfatilsaiee 642
                  v   GdG nd   l+++ +G+am ++   + k a+  m  t+d+   ++ ++e+
  MMETSP1061-20121228|6921_1 253 NVIAIGDGTNDIEFLQISGLGIAMNNAHDSLKKVASYtMEWTNDE-HGVMKTLED 306
                 45557*******************999888888887514445554.456666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 1456.43
//
Query:       MMETSP1061-20121228|6923_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       288  (0.0702097); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.10s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1443.36
//
Query:       MMETSP1061-20121228|6920_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-05   21.0   0.1      0.011   14.1   0.0    2.9  2  TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase
  ------ inclusion threshold ------
      0.011   13.0   0.3       0.24    8.6   0.1    2.3  2  TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit
        4.8    5.4  16.0       0.23    9.7   0.5    3.1  3  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR00256  TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.53   7.3e+02       3      24 ..      21      42 ..      19      56 .. 0.83
   2 !   14.1   0.0   7.8e-06     0.011      67     117 ..     150     201 ..      73     222 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.53
   TIGR00256  3 allqrvsqasvvvegevigeik 24
                +++qr  +as+ ++ + +  ++
  MMETSP1061-20121228|6920_1 21 MVIQRYRKASLLIDEKDVVTVG 42
                799*******999988776655 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 7.8e-06
   TIGR00256  67 keagGeilsvsqftlaadtkk.GlrPsfskaakpdkakelyekfveklrekg 117
                 + a+ ++++v q  l+a  kk G+  ++    +  + +ely+ fv+ + e  
  MMETSP1061-20121228|6920_1 150 QSAKVSVMIVPQANLIARIKKnGKSVQYRDQIEKSRGEELYDMFVKTVEELL 201
                 567889************987478889*******************998764 PP

>> TIGR02429  pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.1   0.00017      0.24      81     116 ..     139     174 ..     125     177 .. 0.79
   2 ?    1.9   0.0     0.018        25      52      89 ..     344     384 ..     320     390 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00017
   TIGR02429  81 qsdskvfeelyraGkielelvpqgtlaeriraaGaG 116
                    + +  e+ ++ k+ + +vpq++l  ri+  G  
  MMETSP1061-20121228|6920_1 139 AVAAAAAAETKQSAKVSVMIVPQANLIARIKKNGKS 174
                 55566677888999*****************99976 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.018
   TIGR02429  52 snnagnGe...lGlakllkagavkklicsfprqsdskvfee 89 
                 +nn+ nG+    G++ ll+   v  +  sf +++  + f++
  MMETSP1061-20121228|6920_1 344 NNNSNNGDergRGISGLLDPSFVTLVAGSFGKRQGLELFSD 384
                 5666666533369*****************99988888776 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   3.1      0.03        41      54      74 ..     132     152 ..     127     159 .. 0.63
   2 ?   -0.8   0.1      0.32   4.3e+02      41      82 ..     193     234 ..     182     244 .. 0.54
   3 ?    9.7   0.5   0.00017      0.23      58     103 ..     315     360 ..     289     362 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.03
   TIGR03685  54 iekaaaapvaaaaaaaaaaea 74 
                 i +aaa++vaaaaaa ++++a
  MMETSP1061-20121228|6920_1 132 IVQAAATAVAAAAAAETKQSA 152
                 456666666666666555444 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.32
   TIGR03685  41 lvaaLedvdieeaiekaaaapvaaaaaaaaaaeaaeeekeee 82 
                  v ++e++ iee  + ++++   + + + +++++ +++++++
  MMETSP1061-20121228|6920_1 193 FVKTVEELLIEEHEQITTTTNSNSNSNSNSNSTKPKSNNNAN 234
                 567777777777654444444444444433333333333322 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00017
   TIGR03685  58 aaapvaaaaaaaaaaeaaeeekeeeeeeeeekeeeeeealegLgaL 103
                 a a +aaa  +a + +a+ +++ee +++++++ ++ +e + g++ L
  MMETSP1061-20121228|6920_1 315 ASASAAAAVVPANDPRARTDATEESNNNNNNNSNNGDERGRGISGL 360
                 2223333333344444455555555566666667777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.21
# Mc/sec: 2476.37
//
Query:       MMETSP1061-20121228|6924_1  [L=1363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.6    4.1   4.7        5.9    2.9   3.3    1.5  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
        3.5    3.7   6.3        7.2    2.7   4.3    1.5  1  TIGR00926 2A1704: oligopeptide transporter, peptide:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   3.3    0.0029       5.9     665     752 ..     230     319 ..     185     328 .. 0.62

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0029
   TIGR04154 665 eeeeaseqslkvetkeeeenaseaeaaaeadnaasaaeafaeeeeealehyRlvhesstsatseeeskqkVKiFErVkGAtikGt..apa 752
                 ++++ ++q+ k ++k+++++  +++a+ +a n+++++++++++++++  +  ++  +++++t+++ ++++   FE     t++Gt  +++
  MMETSP1061-20121228|6924_1 230 SDKNHHHQTHKSNNKHNQQSDAKSNAKSTASNSNNNNNNTNNNTNNNNVNTSVLSATPSTDTTDNFYSRRCQSFESMGSSTVTGTttTSS 319
                 2333333333333333333333333333333333444444444446666777788888888888889989***************54333 PP

>> TIGR00926  2A1704: oligopeptide transporter, peptide:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   4.3    0.0035       7.2     387     543 ..     227     397 ..     205     459 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0035
   TIGR00926 387 evlsdsrkvalvedllskeekesksgieskesskkp.ngddeldidlsadglagevsklkkevelekkkskvllvsqdglklyevaaktekaktekGelsir.............lvstlnkeggaia.lskeesesvednlsvdksekaklyvlepavnleeedkkksatl 543
                    sd+++  ++++ ++k++++s+++ + k+++ +  n++++ + +++++++ ++v + + ++  +++ +     s +++  ++v+ +t++ +t +G+++ +              +  + k  + +a   +++++s+ +++  ++++  ++   ++++n++++  +++ +l
  MMETSP1061-20121228|6924_1 227 PKASDKNHHHQTHKSNNKHNQQSDAKSNAKSTASNSnNNNNNTNNNTNNNNVNTSVLSATPSTDTTDNFYSRRCQSFESMGSSTVTGTTTTSSTSNGQAATKrplplplplplppAPAPVSKL-KPMAsFRRQAANSIRNHNNNNNNNSSNSNNNKNNNNSNNDGGSEKEQL 397
                 44567777777888888888888888877777766646667777788888888888888888888888888888888899999999999999999***9999899988887754433333333.444404555556666655555666666666666666666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       320  (0.0780107); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.66u 0.16s 00:00:00.82 Elapsed: 00:00:00.49
# Mc/sec: 3671.45
//
Query:       MMETSP1061-20121228|6925_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 443.96
//
Query:       MMETSP1061-20121228|6928_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 491.96
//
Query:       MMETSP1061-20121228|6926_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1891.84
//
Query:       MMETSP1061-20121228|6932_1  [L=1418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.06u 0.17s 00:00:01.23 Elapsed: 00:00:00.83
# Mc/sec: 2254.95
//
Query:       MMETSP1061-20121228|6930_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1354.32
//
Query:       MMETSP1061-20121228|6936_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       461  (0.112384); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1192.79
//
Query:       MMETSP1061-20121228|6935_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   15.8   0.0     0.0017   15.3   0.0    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0     4e-07    0.0017     229     286 ..     187     242 ..     176     250 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 4e-07
   TIGR01622 229 fnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlel 286
                 +n+ E  L+   e+ G +  ++ + D+     +  G ++F+d e ak+   + NG+++
  MMETSP1061-20121228|6935_1 187 SNMGEAALKMTLEALGAVAELECEEDDSFPILR--GKVTFEDIESAKACVAQYNGMDM 242
                 8***************************97777..57*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1391.39
//
Query:       MMETSP1061-20121228|6939_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.5   0.0      0.027   10.8   0.0    1.2  1  TIGR00066 g_glut_trans: gamma-glutamyltransferase


Domain annotation for each model (and alignments):
>> TIGR00066  g_glut_trans: gamma-glutamyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   6.5e-06     0.027     115     190 ..     107     183 ..      96     188 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 6.5e-06
   TIGR00066 115 GqlslkdliePaiklaekGfaisealaetlekyeekllttkeeskk.vflkkgkavlkeGdklvqkdLak.sLeliae 190
                  q +l dl++P+++la +   +se l+ + +   ++l   ++   + ++++  k +l+eG ++v ++La+ +L +i +
  MMETSP1061-20121228|6939_1 107 WQAKLDDLLDPSTNLADRQILVSELLTSNDKIRDDVLDALANRKIDpLLTPAQK-KLQEGTRAVVRQLANdILPQIST 183
                 5889*******************9888777666666666654444416666666.*************9625777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2543.33
//
Query:       MMETSP1061-20121228|6941_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-17   58.3   0.0    8.8e-17   58.1   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.3e-05   22.5   0.0    1.9e-05   22.1   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.0   4.3e-20   8.8e-17       2     193 ..      26     207 ..      25     237 .. 0.82

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 4.3e-20
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaa.dGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRge.pvtaksDlYaWGLivleCLtGkrvvqGas 193
                 tg+ vaik ++++ +ee   +    Rei+l  + +hPni++L+D   ++d  +  v+e+ e   l ++L++ + +++ a+  + +   L+a++a hd+ ++hRDLkP+n++  + ++    k+ DFG++ +    +     +l        +  Y  Pe L g     +++D+++ G i+ e L  ++ +qG+ 
  MMETSP1061-20121228|6941_1  26 TGRVVAIKKIKSERPEEGVNFTAI-REIKLLREFKHPNIIELVDVFSTPDMAICLVYELAET-DLEKILNNkQISISLADIKQHLFSLLNAISACHDRWILHRDLKPDNMLFIKDGT---MKLGDFGLARMYGTPKT----RLSP---QAITLWYKPPELLLGSyEYSSAADIWSVGCIFAELLLRRPFLQGKN 207
                 8899*********99999888765.8********************************9885.6888887625689999******************************88876664...5899****987644333....3333...33455799999998862467889**********9999999999974 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   9.1e-09   1.9e-05      46     138 ..      50     151 ..      33     166 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 9.1e-09
   TIGR03724  46 kEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                 +E++ll+e k+  +   v ++ +p+ ++ ++ ++ +++l+++l++k+         ++l ++ ++++ +H+  i+h Dl + N+++ kd+++ l DfGL+++
  MMETSP1061-20121228|6941_1  50 REIKLLREFKHPNIIELVDVFSTPDMAICLVYELAETDLEKILNNKQIsisladikQHLFSLLNAISACHDRWILHRDLKPDNMLFiKDGTMKLGDFGLARM 151
                 5666666666666554444444555455555668888888888887777888877777778889999*****************98678899999****987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1437.74
//
Query:       MMETSP1061-20121228|6943_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.007   15.1   0.1      0.012   14.4   0.0    1.5  2  TIGR01870 cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2


Domain annotation for each model (and alignments):
>> TIGR01870  cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.9e-06     0.012       2      26 ..      10      34 ..       9      46 .. 0.81
   2 ?   -1.0   0.0      0.18   7.5e+02      63      70 ..      40      48 ..      32      61 .. 0.55

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.9e-06
   TIGR01870  2 kttqlRklydelrkieekirrsekk 26
                k++q+R++++ l +i e+i+++e++
  MMETSP1061-20121228|6943_1 10 KKNQIRRFFSGLHSIVERIIEEEGF 34
                89****************9998554 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.18
   TIGR01870 63 ldkidki.d 70
                ++k+d+  d
  MMETSP1061-20121228|6943_1 40 KEKGDNDnD 48
                334443322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 367.27
//
Query:       MMETSP1061-20121228|6946_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.15s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|6946_2  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 358.26
//
Query:       MMETSP1061-20121228|6948_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 950.32
//
Query:       MMETSP1061-20121228|6947_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1487.88
//
Query:       MMETSP1061-20121228|6945_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.4    4.2   9.8        7.3    3.5   6.8    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   6.8    0.0018       7.3      81     136 ..      20      75 ..      10      91 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0018
   TIGR00601  81 kakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatatalese 136
                  ++++  a+tp +a++++psa +as+a+ ++++ ++++e+e +a  + ++t+  ++
  MMETSP1061-20121228|6945_1  20 VTSVQGRATTPGAAAASAPSAAAASLATTATTTATTTTEDEPPAFAKDATTSSDEP 75 
                 23566666677777777776677777777776666666666666555555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.18s 00:00:00.45 Elapsed: 00:00:00.26
# Mc/sec: 3025.60
//
Query:       MMETSP1061-20121228|6950_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.17s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 769.94
//
Query:       MMETSP1061-20121228|6951_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-12   44.6   0.1    7.8e-12   43.1   0.0    1.8  2  TIGR01068 thioredoxin: thioredoxin
    1.6e-07   29.4   0.1    5.4e-07   27.7   0.0    1.9  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    4.6e-06   24.3   5.3      2e-05   22.2   3.7    2.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
  ------ inclusion threshold ------
      0.042   11.3   0.5      0.066   10.6   0.0    1.6  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.87   8.9e+02      61      89 ..      27      55 ..      17      69 .. 0.65
   2 !   43.1   0.0   7.6e-15   7.8e-12      13      99 ..     146     232 ..     133     234 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.87
   TIGR01068 61 aakygirsiPtlllfkngkevkrvvGakp 89
                aa++  ++i t+     gk+ +++   ++
  MMETSP1061-20121228|6951_1 27 AATAAATTIATVAASSRGKQLQQQPQQQQ 55
                55566677778877777877776654444 PP

  == domain 2    score: 43.1 bits;  conditional E-value: 7.6e-15
   TIGR01068  13 sdklvlvDfwAeWCgpCkmlaPvle.elakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeliek 99 
                 +    +v f A WCgpCk+  P l+ e+a+   + + +v  +  +++ +   ++i++ Pt ++f+ng+e++rv G+   ++l+ +i+k
  MMETSP1061-20121228|6951_1 146 ETDGCVVTFSARWCGPCKVCKPRLQgEIASRSPTPIGYVYEDDLDSSFLDVLVEIKAFPTFVFFRNGREIERVEGVDL-ESLEAMIQK 232
                 334689*****************98689999999998877776677889999***********************976.778888876 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.85   8.7e+02      59      73 ..      64      78 ..      29      92 .. 0.60
   2 !   27.7   0.0   5.3e-10   5.4e-07       6     101 ..     138     230 ..     133     234 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.85
   TIGR01126 59 aekelaskfkvsgfP 73
                ++k++++k  v+g P
  MMETSP1061-20121228|6951_1 64 QQKRQQQKRRVRGLP 78
                334444555555555 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 5.3e-10
   TIGR01126   6 fdelvl.denkdvlvefyaPWCGhCkklaPeye.klakelkkeeekvkiakvdat..aekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefv 101
                 + ++++ +e++ ++v f a WCG Ck   P  + ++a++         i+ v  +    + l   +++++fPt  ff++g++  ++ eG  ++e+l++++
  MMETSP1061-20121228|6951_1 138 LTDFMNaHETDGCVVTFSARWCGPCKVCKPRLQgEIASRSP-----TPIGYVYEDdlDSSFLDVLVEIKAFPTFVFFRNGRE-IERVEGV-DLESLEAMI 230
                 55555414567799****************97624444433.....344444333003344556689*************96.7777774.555565555 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   3.7   1.9e-08     2e-05     249     453 ..      28     235 ..       2     241 .] 0.66

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.9e-08
   TIGR01130 249 seellekflevakkfkgkkvkfavadeeefgkeleelglkaekapavvilsleeskkyaleqeefssealkefvkdfldgklkpvlkSepipeddeepVkvvVgknfdeivlde..........tKdVLvefYApWCGHCkkLapiYe.elaekykk.eedvviakldataNdvpefevegFPTilfvpagkksepvkyegdRtledlvkFikknat 453
                      + +  va +++gk+++ + ++++  +++ ++ + +++++  v+ l +++    + e++e +se+ +  +  ++ ++++ v  S p ++      ++   knf ei+ +e          t    v f A WCG Ck  +p  + e+a++       v    ld+   dv  +e+++FPT +f+++g++    +   + +le+l   i+k++ 
  MMETSP1061-20121228|6951_1  28 ATAAATTIATVAASSRGKQLQQQPQQQQPQQQQKRQQQKRQQQKRRVRGLPKNN----NCETKEKTSENST-HLIPVQPNQASSVSTSTPTFTCRTIMSTTFPNKNFVEIATEEeltdfmnaheTDGCVVTFSARWCGPCKVCKPRLQgEIASRSPTpIGYVYEDDLDSSFLDVL-VEIKAFPTFVFFRNGREI---ERVEGVDLESLEAMIQKEGR 235
                 556667778888888888777766666655555555555555566666666665....4444445554433.4445666666667777776666666666666666666665541111111111445789999************997689999888655777789*****9*99.***************995...44456788888888888876 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.4       1.3   1.4e+03      37      56 ..      44      63 ..      28      74 .. 0.50
   2 ?   10.6   0.0   6.4e-05     0.066      42     106 ..     126     191 ..     111     203 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.3
   TIGR00385 37 gkpvpaekeaelkekvqllt 56
                gk+ +++++++ ++++q  +
  MMETSP1061-20121228|6951_1 44 GKQLQQQPQQQQPQQQQKRQ 63
                44444444444444443333 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 6.4e-05
   TIGR00385  42 aekeaelkekvqlltaevlkkgklvLlnvwasWCptCraehplLk.elakeglrivgvdykDesqk 106
                 +++  e+  + +l++   +++++  ++ + a WC++C+   p L+ e+a +    +g  y D+ + 
  MMETSP1061-20121228|6951_1 126 NKNFVEIATEEELTDFMNAHETDGCVVTFSARWCGPCKVCKPRLQgEIASRSPTPIGYVYEDDLDS 191
                 5555555555566666667777889999*************9997689998866678888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       447  (0.108971); expected 82.0 (0.02)
Passed bias filter:                      237  (0.0577767); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 1325.39
//
Query:       MMETSP1061-20121228|6949_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 489.46
//
Query:       MMETSP1061-20121228|6944_1  [L=765]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.33
# Mc/sec: 3059.75
//
Query:       MMETSP1061-20121228|6953_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|6955_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.8   0.4      0.054   11.2   0.3    1.8  1  TIGR02443 TIGR02443: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02443  TIGR02443: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.3   1.3e-05     0.054      19      51 ..     203     235 ..     199     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.3e-05
   TIGR02443  19 DtlalwkEndielvECveCgyqeqrkdkeveks 51 
                 D+ +   En i+   C+eC ++eq++ +  + +
  MMETSP1061-20121228|6955_1 203 DSSTTEDENMIPAGKCMECTFSEQKTYEACRAT 235
                 6666668*****************998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 2255.81
//
Query:       MMETSP1061-20121228|6962_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    9.8  10.9       0.17   10.1   1.2    2.4  2  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   1.5    0.0025        10      32      41 ..      55      64 ..      46      65 .. 0.69
   2 ?   10.1   1.2   4.2e-05      0.17      15      41 ..     104     133 ..      94     133 .. 0.54

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0025
   TIGR03892 32 sSsCsTcsct 41
                +++++++s+t
  MMETSP1061-20121228|6962_1 55 TATSTSTSTT 64
                6666666666 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 4.2e-05
   TIGR03892  15 ad....laevgassgatstsssSsCsTcsct 41 
                 +d    l + +  ++++s sssSs s++s++
  MMETSP1061-20121228|6962_1 104 MDalqlLQPSDK-NQTASLSSSSSPSSSSSS 133
                 333333333344.666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 833.93
//
Query:       MMETSP1061-20121228|6963_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 516.96
//
Query:       MMETSP1061-20121228|6964_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 587.35
//
Query:       MMETSP1061-20121228|6957_1  [L=1046]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1046 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.43
# Mc/sec: 3210.71
//
Query:       MMETSP1061-20121228|6960_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-05   22.2  10.9      0.024   13.0   2.5    3.2  2  TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase


Domain annotation for each model (and alignments):
>> TIGR00560  pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   2.5   5.8e-06     0.024       3      57 ..      60     108 ..      58     113 .. 0.85
   2 !   10.3   0.5   3.8e-05      0.16      60     162 ..     156     273 ..     151     291 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.8e-06
   TIGR00560   3 ipnklTlvRi.ialpllillllenvlslqvslliggllfliaavtDylDGylARky 57 
                 ++n++T +R  +++p+l++l            +  ++l+++  + D+lDG +AR +
  MMETSP1061-20121228|6960_1  60 TANWITYARTvLVVPTLLFLSW-------GYIVLPSFLVIFVDFGDFLDGVVARFW 108
                 68*******9789999988877.......45567789999**************99 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 3.8e-05
   TIGR00560  60 vsnfGkllDPlaDkvlvla...vliilvyk....glvpallliviiaRelvisglRvlaa..............ekgkeviaanllGKlKtvaqivaiaa.lllyslnfklvvlliaqllyyiAa 162
                  s +G + D + Dk  v+    +l+ +v++     ++++++l+ +i+ e++ + +R+ a+              +++++ ++a+ +GK K +  +v++a+ +l +       v +++ + +++A+
  MMETSP1061-20121228|6960_1 156 NSTYGGFVDAVCDKAFVVPcwiALLNVVQQtnhvRWLQYSILFFLILAEVASGCIRFRAYftsvavpapkvegfDFSTSAVKADHVGKAKQTFEMVGTALfILPW-------VRYLGLAFLFLAV 273
                 678899999999998888733344444443111146677888888999998888887654222222222222113457889999*************99933333.......3334444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1561.24
//
Query:       MMETSP1061-20121228|6959_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    8.7  19.4       0.17    8.0  13.4    1.3  1  TIGR03705 poly_P_kin: polyphosphate kinase 1
        1.1    7.1  14.3        2.7    5.8   9.9    1.6  1  TIGR01428 HAD_type_II: haloacid dehalogenase, type II


Domain annotation for each model (and alignments):
>> TIGR03705  poly_P_kin: polyphosphate kinase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0  13.4   8.5e-05      0.17      61     184 ..     383     504 ..     342     527 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 8.5e-05
   TIGR03705  61 keaskdgltpkeqlekisekakelveeqyellnelleelekegivlleeeelseeqkewlkkyfkeevlpvltPlaldpahpfprllnkslnlavelekdasgrekklaivevPralprliklp 184
                 ++++++++++++q ++ +++  + ++ q++ +++  ++l++  ++ l++++ +++q++  ++ f + ++ +  Pl  +pa  +++ +n+++ la  l ++ + ++++ +  +  + lp l++ p
  MMETSP1061-20121228|6959_1 383 QQQQQQQQQQQQQQQQQQQQQWQQQQWQQQQWQQQQQQLNS-ALQTLQQQQQQQQQQQQQQQRFASALQSLQQPLQTNPAGELQQQQNRDTLLASLL-SNVNAKTNMNSNPQTESMLPSLVSQP 504
                 22233344444444455555566667788899999999976.588899999999999999**********************************999.55555555555555556666666555 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   9.9    0.0013       2.7      20     126 ..     382     491 ..     374     500 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0013
   TIGR01428  20 eraeellgekeelsqlwrqkqleysrlrtlmgaykdfdeltaealkalleelgle.leeaaaerlveavkrLe.pfpdvaag.LkkLkerglklv.iLsNgstatlkslvk 126
                 ++ +++ ++ ++  q+ +q+q ++++ +  ++++++ ++  + al+ l ++ + +  ++++++r ++a+++L+ p + ++ag L++ ++r   l+  LsN++ +t ++++ 
  MMETSP1061-20121228|6959_1 382 QQQQQQQQQ-QQQQQQQQQQQQQWQQQQWQQQQWQQQQQQLNSALQTLQQQQQQQqQQQQQQQRFASALQSLQqPLQTNPAGeLQQQQNRDTLLAsLLSNVNAKTNMNSNP 491
                 333333333.4667777777778888888888****************9999888688889999*******954888888877998888877666258****999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1218  (0.296928); expected 82.0 (0.02)
Passed bias filter:                      248  (0.0604583); expected 82.0 (0.02)
Passed Vit filter:                        99  (0.0241346); expected 4.1 (0.001)
Passed Fwd filter:                        27  (0.00658216); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.97u 0.20s 00:00:01.17 Elapsed: 00:00:00.43
# Mc/sec: 1927.65
//
Query:       MMETSP1061-20121228|6965_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-260  862.9   5.6     4e-260  862.6   3.9    1.0  1  TIGR00484 EF-G: translation elongation factor G
    1.8e-84  282.0   5.5    4.9e-31  105.4   0.0    3.0  3  TIGR00490 aEF-2: translation elongation factor aEF-2
    1.3e-62  209.7   7.8    6.3e-35  118.3   0.2    3.9  3  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    3.3e-59  198.5   1.4    4.7e-59  198.0   0.9    1.1  1  TIGR00503 prfC: peptide chain release factor 3
      8e-53  177.5   2.9      1e-30  104.5   0.1    3.9  3  TIGR01393 lepA: GTP-binding protein LepA
    9.7e-25   85.1   0.1    1.7e-24   84.3   0.0    1.4  1  TIGR00231 small_GTP: small GTP-binding protein domain
      2e-14   51.1   0.2    1.1e-11   42.0   0.0    3.0  2  TIGR00487 IF-2: translation initiation factor IF-2
      3e-12   43.8   0.9    7.7e-12   42.4   0.0    2.0  2  TIGR00485 EF-Tu: translation elongation factor Tu
    5.5e-12   42.7   0.4    2.8e-11   40.3   0.1    1.9  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    2.1e-09   34.8   0.3    1.8e-06   25.1   0.1    2.5  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
      1e-06   25.6   0.6    2.6e-06   24.2   0.1    1.9  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    0.00024   18.2   0.1    0.00068   16.8   0.1    1.6  2  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    0.00035   16.9   0.3     0.0012   15.2   0.0    2.0  2  TIGR00491 aIF-2: translation initiation factor aIF-2
     0.0024   14.8   0.0       0.18    8.6   0.0    2.4  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  862.6   3.9  1.4e-262    4e-260       8     689 ..      43     733 ..      37     735 .. 0.97

  Alignments for each domain:
  == domain 1    score: 862.6 bits;  conditional E-value: 1.4e-262
   TIGR00484   8 eklrniGisahidaGktttterilfytgkihkigevh..dGa.atmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveqlksrldvnavplqlpiGaedkfeGvidlvkkkayffeedkgekaeekeiPedlkeeakelreklveavaeldeelmekyleGeeltieeikkairkgvlalelvpvlvGsafknkGvqllldavvdylPsPvdvkaikaidedtekeielkasddepfvalafkvatdpfvgkltfvrvysGvlksGsevlnsrkekkervgrlvkmhankreeieevraGdiaaliGlkdtttGdtlcdekaevilesmefpePvislavePktkadqekmgialgklaeedPtfkvftdeesgqtiiaGmGelhldiivdrlkrefkvevnvGkPqvayretirkkaevegkyakqsGGrGqyGhvvielePlee......gkgyefvneikGGviPreyipavdkGleealesGvlaGyPvvdikvtlfdGsyhdvdsselafklaaslalkeavkkakPvllePimkvevevPeeylGdvlGdlsrrrgliegse..eresvkvvkaevPlsemfGyatdlrsatqGraeysmeflkyaevPksvaeeiiekk 689
                 + lrniGisahid+Gktt+teril+ytgki  i++v+  dG+ a+md+me+e+e+Giti saat ++wkd +in+idtPGhvdftvever+lrvldG v+vl+ v+Gv++qs tv+rq+k+y+vPr++fvnk+d+ Ga +++v  ql+++l++na ++q+piG+e  +eGv+dlv+++++ f+++kge++++ +iPed+k++++e+r +l+e +a++d+++ e +l  e  ++e++k+air++++++e+vpv++GsafknkGvq lld v+dylP P++ k+     +++e+++e+  ++d+ + alafk+ + +f+ +lt++rvy+G+lk+G++++n+   kk +++r+v+mh+++ eei+e  aG+++a++G+++ +  dt++  +a++++ sm++pePv+sl+++Pk+ + q+++g+al k+++edPt++v +de++++tii+GmGelhl+++++rl+re++ve  +G+P+v y+eti++k +++  ++kq+GG Gqy +v+  +ePl e      + +  f n+  G  iP e+  +++kG+++a+ +G+l+G  v  ++v l dG  h vdss++af+   + a+++++kka+P +leP+mkveve+P+e++G v+  l+rr g+i++s+  +++s +++ aevPls+mfGy+t+lrs tqG++e+sme+ k+ +vP+++ +e+++k 
  MMETSP1061-20121228|6965_1  43 TALRNIGISAHIDSGKTTLTERILYYTGKINSIHDVRgkDGVgAKMDSMELEREKGITIQSAATFCQWKDSHINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSGVQSQSLTVDRQMKRYDVPRLAFVNKLDRQGASPENVIGQLRDQLKLNAAAVQIPIGLEGAHEGVVDLVEQRSIQFDGEKGENLIYGDIPEDMKDDVEEKRMELLERLADVDDDIAELFLMEEFPDTETLKAAIRRRTISCEFVPVFMGSAFKNKGVQPLLDGVIDYLPEPKEKKNFALDITKDETPVEVTCDKDDSLLALAFKLDETRFG-QLTYMRVYQGTLKKGNYITNVNSGKKIKLARIVRMHSDDMEEIDEAGAGEVVAMFGVDCKS-MDTFSCGSADLVMASMFVPEPVMSLSLKPKKSTMQNQLGKALNKFTKEDPTLRVKVDEDTQETIISGMGELHLEVYIERLNREYEVECITGAPNVNYKETINSKQKFDWIHKKQTGGSGQYARVMGFIEPLSEeeqkelNSTTHFDNQCIGTNIPPEFYSSCEKGMQDAIVEGALVGSEVEGMRVVLQDGAAHAVDSSDMAFRTCMANAIRDTMKKANPSILEPVMKVEVEIPSEFQGTVVAALNRRMGMIQSSDvnDDGSGVTILAEVPLSNMFGYSTELRSLTQGKGEFSMEYFKHIQVPRNMQDELMKKY 733
                 568*********************************877**999***************************************************************************************************************************************************************************************9999************************************************999654334449*********************99996.*********************************************************9998.8*********************************************************************************************************************************87655455556789************************************************************************************************************98722566788999*******************************************9986 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.4   0.1   4.2e-31   1.2e-28      17     151 ..      43     178 ..      37     195 .. 0.88
   2 !  105.4   0.0   1.7e-33   4.9e-31     244     473 ..     306     525 ..     298     569 .. 0.88
   3 !   80.4   0.2   5.9e-26   1.7e-23     562     715 ..     584     737 ..     577     741 .. 0.95

  Alignments for each domain:
  == domain 1    score: 97.4 bits;  conditional E-value: 4.2e-31
   TIGR00490  17 efirnigivahidhgkttlsdnllagagmis..eelageq...lfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrl 151
                   +rnigi ahid gkttl++ +l  +g i   +++ g++     +d  e e+e+giti++a        + ++  in+idtpghvdf  +v ra+r +dg ++v+c v gv  q+ tv rq  + +v  + f+nk+dr 
  MMETSP1061-20121228|6965_1  43 TALRNIGISAHIDSGKTTLTERILYYTGKINsiHDVRGKDgvgAKMDSMELEREKGITIQSAATF----CQWKDSHINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSGVQSQSLTVDRQMKRYDVPRLAFVNKLDRQ 178
                 579*************************9973346666652226799999**********98754....3557899**************************************************************95 PP

  == domain 2    score: 105.4 bits;  conditional E-value: 1.7e-33
   TIGR00490 244 qvvldmvikhlpspaeaqkyriaviwkgdlnseagkamlncdpegplavvitkivvdkhagevavgrlysgaikkgsevylvdskakariqqvgvymgpervevdeipagnivavvglkeavageticstdkkikafeaikhisepvvtvaieakntkdlpklievlrkvakedptvkveineetgehlisgmgelhleiivkkirekagvevetsepivvyretvtgts 473
                 q +ld vi +lp p e ++         d+  ++    + cd +  l ++  k+  + + g+++  r+y g++kkg+ +  v+s +k ++ ++  +   +  e+de  ag++va+ g+   +     c ++  + a      + epv++++++ k++    +l + l k +kedpt++v+++e+t e +isgmgelhle+ +++ +++++ve +t+ p v y+et+  + 
  MMETSP1061-20121228|6965_1 306 QPLLDGVIDYLPEPKEKKNFA------LDITKDETPVEVTCDKDDSLLALAFKLD-ETRFGQLTYMRVYQGTLKKGNYITNVNSGKKIKLARIVRMHSDDMEEIDEAGAGEVVAMFGVDCKSMDTFSCGSADLVMA---SMFVPEPVMSLSLKPKKSTMQNQLGKALNKFTKEDPTLRVKVDEDTQETIISGMGELHLEVYIERLNREYEVECITGAPNVNYKETINSKQ 525
                 6799***********988765......48889999999*******9999988875.7899*******************************998888888889***************888888777888777654...56899*********************************************************************************98765 PP

  == domain 3    score: 80.4 bits;  conditional E-value: 5.9e-26
   TIGR00490 562 egfkeamrngpvakekvmgvkvklvdaklhedavhrgpaqvipavrkgifaallqaepvlleplqkvfinvpqdlmgaatreiqnrrgqil..emkqegdmvtikakvpvaemfgfagairgategralwstefagfekvprelqeelvkevrkrk 715
                 +g+++a+ +g +   +v g++v l d   h  av          + ++i++++ +a+p +lep+ kv +++p ++ g+++  ++ r g i   +++++g  vti a+vp+++mfg++ ++r+ t+g+  +s+e+  + +vpr++q+el+k+ r+ k
  MMETSP1061-20121228|6965_1 584 KGMQDAIVEGALVGSEVEGMRVVLQDGAAH--AVDSSDMAFRTCMANAIRDTMKKANPSILEPVMKVEVEIPSEFQGTVVAALNRRMGMIQssDVNDDGSGVTILAEVPLSNMFGYSTELRSLTQGKGEFSMEYFKHIQVPRNMQDELMKKYREEK 737
                 6999***********************998..899999999999********************************************7753389999*******************************************************988 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.3   0.2   2.1e-37   6.3e-35       1     150 [.      45     198 ..      45     233 .. 0.87
   2 !   62.8   0.3   1.3e-20   3.9e-18     194     390 ..     339     523 ..     236     532 .. 0.86
   3 !   29.3   0.1   1.8e-10   5.4e-08     385     468 ..     634     718 ..     627     732 .. 0.83

  Alignments for each domain:
  == domain 1    score: 118.3 bits;  conditional E-value: 2.1e-37
   TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlrekeevee.....rvmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfvelgad 150
                 +rni i ah+D Gkttl +++L  +g +++ ++v+        mDs +lere+Giti + +t  ++kd +ini+DtPGh Df  ever l ++dg +l+   + G+ +q   v ++  +++   +  +nk+Dr+ a pe+v+ +  d + +l+a 
  MMETSP1061-20121228|6965_1  45 LRNIGISAHIDSGKTTLTERILYYTGKINSIHDVRGkdgvgAKMDSMELEREKGITIQSAATFCQWKDSHINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSGVQSQSLTVDRQMKRYDVPRLAFVNKLDRQGASPENVIGQLRDQL-KLNAA 198
                 6************************998887766531112257**************************************************************************************************99988754.34443 PP

  == domain 2    score: 62.8 bits;  conditional E-value: 1.3e-20
   TIGR01394 194 kadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdivavaGledieigetiadaeeaealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrre.GfelsvskPkvivke.idg 390
                 + dkd++l +l  +ld +++ G+++  rv++G++kkg+ ++ +++ +ki+ ari+++    + +  eidea+aG++va+ G++ ++  +t ++ ++   + ++ v eP +s++++  +s +  + gk          L++  +++ +lrv+  e++++  +sG GeLhl + ie + re   e   + P+v +ke i+ 
  MMETSP1061-20121228|6965_1 339 TCDKDDSLLALAFKLDETRF-GQLTYMRVYQGTLKKGNYITNVNSGKKIKLARIVRMH---SDDMEEIDEAGAGEVVAMFGVD-CKSMDTFSCGSADLVMASMFVPEPVMSLSLKPKKSTMQNQLGK---------ALNKFTKEDPTLRVKVDEDTQETIISGMGELHLEVYIERLNREyEVECITGAPNVNYKEtINS 523
                 56889999999999999987.***********************99999999988765...456789**************96.566799*************************999998776665.........567777888999999999999*********************9334556799****9984443 PP

  == domain 3    score: 29.3 bits;  conditional E-value: 1.8e-10
   TIGR01394 385 vkeidgkklePieeltidvpeefvgavieklgkrkgelk..dmeskgsGrvrlefkiPsrgliGfrtefltatrGegilnrvfdey 468
                 +k+ + + leP+ ++ +++p ef+g+v+ +l +r g ++  d++++gsG + l  ++P   ++G++te+ + t+G+g  +  + ++
  MMETSP1061-20121228|6965_1 634 MKKANPSILEPVMKVEVEIPSEFQGTVVAALNRRMGMIQssDVNDDGSGVTIL-AEVPLSNMFGYSTELRSLTQGKGEFSMEYFKH 718
                 677888999***************************98722566666766655.699*******************9887766555 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.0   0.9   1.6e-61   4.7e-59      10     469 ..      44     518 ..      38     536 .. 0.83

  Alignments for each domain:
  == domain 1    score: 198.0 bits;  conditional E-value: 1.6e-61
   TIGR00503  10 krrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdplelldevenelkintaaitypiGtGklfkGvyhllkdeiylyesGkgstikavrvvkalddpelda..avGe...dlaqelrdelelveea.saefdkeav....laGeltpvffGtalgnfGvdllldallqyaakpeard.......sdtrtveaaeekfsGfvfklqanmdpkhrdrvaflrvvsGkyekdmklkhvrtgkdvvlsdalkllagdresveeayaGdiiGlhnhGtiqiGdtvtqGek.lkftgipnfape..lfrrlrlkdplkqkqllkGlvelseeG.avqvlrsldendlivaavGvlqfdvvvarlkeeynveavyesvnvala 469
                   r++ i +h d+Gkttlte++l y + i+    v+++     ak d me+e+++Gi+i ++    +++d  +n++dtpGh df+ +  r+l   d  ++v+    Gv++++  +    +  d+p l+f+nkldr+  +p +++ ++ ++lk+n+aa++ piG      Gv +l+++    ++  kg+     ++   ++d   +    + e   d+ +++  el l+ee   +e  k+a+    ++ e+ pvf+G+a++n Gv+ lld++++y ++p+ ++        d   ve + +k    ++ l   +d     +++++rv  G  +k+  + +v  gk+++l++  ++ ++d e+++ea aG+++ +    + +  dt+  G   l+ ++   f pe  +   l+ k  + q ql k l ++++e  +++v    d ++ i++ +G l ++v + rl+ ey+ve++  + nv   
  MMETSP1061-20121228|6965_1  44 ALRNIGISAHIDSGKTTLTERILYYTGKINSIHDVRGKDG-VGAKMDSMELEREKGITIQSAATFCQWKDSHINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSGVQSQSLTVDRQMKRYDVPRLAFVNKLDRQGASPENVIGQLRDQLKLNAAAVQIPIGLEGAHEGVVDLVEQRSIQFDGEKGENLIYGDIPEDMKDDVEEKrmELLErlaDVDDDI-AELFLMEEFpDTETLKAAIrrrtISCEFVPVFMGSAFKNKGVQPLLDGVIDYLPEPKEKKnfalditKDETPVEVTCDKDDS-LLALAFKLDETRFGQLTYMRVYQGTLKKGNYITNVNSGKKIKLARIVRMHSDDMEEIDEAGAGEVVAMFGVDC-KSMDTFSCGSAdLVMAS--MFVPEpvMSLSLKPKKSTMQNQLGKALNKFTKEDpTLRVKVDEDTQETIISGMGELHLEVYIERLNREYEVECITGAPNVNYK 518
                 56999********************************986.689***********************************************************************999999**************************************************************98888887777766665543222002223011333333.25556665413344444432222679******************************98863333232467779999998765.56788899***********************************************************988765.567****9975255555..56666115555667788899*********97665167777777777***************************9887777655 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.1   3.6e-33     1e-30       3     160 ..      45     203 ..      43     225 .. 0.86
   2 !   51.8   0.1   3.2e-17   9.4e-15     157     380 ..     294     526 ..     272     544 .. 0.69
   3 !   17.8   0.0   6.4e-07   0.00019     394     472 ..     637     715 ..     618     727 .. 0.85

  Alignments for each domain:
  == domain 1    score: 104.5 bits;  conditional E-value: 3.6e-33
   TIGR01393   3 irnfsiiahidhGkstladrllektkavse......relkeqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieeviGldaeeailv 160
                 +rn+ i ahid Gk+tl++r+l +t+ +++      ++     +ds++lere+Giti++ a   ++k++     ++n+idtPGhvdf+ ev r+l   +G +l++  + Gv++q+l+        d+  +  +nk+d   a++e+v  ++++ + l+a+ + + 
  MMETSP1061-20121228|6965_1  45 LRNIGISAHIDSGKTTLTERILYYTGKINSihdvrgKDGVGAKMDSMELEREKGITIQSAATFCQWKDS-----HINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSGVQSQSLTVDRQMKRYDVPRLAFVNKLDRQGASPENVIGQLRDQLKLNAAAVQIP 203
                 79********************999887642112113444568***********************866.....59*****************************************99999999*****************************9998876554 PP

  == domain 2    score: 51.8 bits;  conditional E-value: 3.2e-17
   TIGR01393 157 ailvsaktGigieelleaivkkvpaPkgdk...................eaplkalifdsvydayr.GvvvyvrvveGkikkgdkikllstgkeyeveevgvltpkl.vkeeelkaGevGyliagikdvkdvkvGdtitsvkkpakealpGfkkvkpvvfaglyPidsedyeelrdaleklklndasltyekesskalGfGfrcGflGllhleviqerlerefdldliataPsvvykvklkdgev 380
                 + + sa + +g++ ll+ +++ +p+Pk++k                   ++ l al f    d+ r G ++y+rv++G++kkg+ i+ +++gk+ ++ ++  ++ +  ++ +e  aGev  +        d k  dt       a+  ++     +pv+  +l P +s+  ++l +al+k++ +d +l  + +  +     + +  +G lhlev  erl+re++++ i+ aP+v+yk + +++++
  MMETSP1061-20121228|6965_1 294 VFMGSAFKNKGVQPLLDGVIDYLPEPKEKKnfalditkdetpvevtcdkDDSLLALAFK--LDETRfGQLTYMRVYQGTLKKGNYITNVNSGKKIKLARIVRMHSDDmEEIDEAGAGEVVAMFG-----VDCKSMDTFSCG--SADLVMASMFVPEPVMSLSLKPKKSTMQNQLGKALNKFTKEDPTLRVKVDEDTQET--I-ISGMGELHLEVYIERLNREYEVECITGAPNVNYKETINSKQK 526
                 55556666666666666666666666654411111111000000000003333344443..3444349*****************************998776665437778888888755432.....356666776554..45666777778899999***************************988766554322..2.3347*****************************977665554 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 6.4e-07
   TIGR01393 394 kieeveePyvkatiivpeeylgailelcqekrgvlkkleyldk.ervelvyelPlaeivldffdklksiskGyasldyel 472
                 +  ++ eP++k+++ +p+e+ g+++  ++++ g++++ ++ d+ + v++  e+Pl++ ++ +  +l+s+++G + +  e 
  MMETSP1061-20121228|6965_1 637 ANPSILEPVMKVEVEIPSEFQGTVVAALNRRMGMIQSSDVNDDgSGVTILAEVPLSN-MFGYSTELRSLTQGKGEFSMEY 715
                 455799****************************9999988652689*********9.589*********9987665543 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   5.7e-27   1.7e-24       3     163 ..      45     218 ..      43     219 .. 0.93

  Alignments for each domain:
  == domain 1    score: 84.3 bits;  conditional E-value: 5.7e-27
   TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskp.....gvt.rdyvteqieedGkt............ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktkvkslfaklnaep.iielsaetgknidklfklve 163
                  ++i+i +h+d+GK+tL++++l++++ i ++       gv+ +++ +e+++e+G+t              +n++DT+G++df       + ever l+v+d+ +lvl   +g+++q  ++ ++ k ++vp++ +vnK D ++ + +   ++l+++l+ ++ ++++++  +   +++++lve
  MMETSP1061-20121228|6965_1  45 LRNIGISAHIDSGKTTLTERILYYTGKINSIHDvrgkdGVGaKMDSMELEREKGITiqsaatfcqwkdSHINIIDTPGHVDF-------TVEVERALRVLDGGVLVLCGVSGVQSQSLTVDRQMKRYDVPRLAFVNKLDRQGaSPENVIGQLRDQLKLNAaAVQIPIGLEGAHEGVVDLVE 218
                 579***************************9889999977635788999*********************************.......*****************************************************888888899999999999899999999999999998887 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   3.9e-14   1.1e-11     118     213 ..      97     191 ..      34     200 .. 0.83
   2 !    5.3   0.0    0.0051       1.5     266     329 ..     348     417 ..     326     425 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 3.9e-14
   TIGR00487 118 GGitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpeanpDrvkqelse 213
                  Git +  a   + +d  +i  +DtPGh  ft    r  +v D  vlv++   Gv+ q        k  +vP + ++nk+D++ a p+ v+ +l +
  MMETSP1061-20121228|6965_1  97 KGITIQSAATFCQWKDS-HINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSGVQSQSLTVDRQMKRYDVPRLAFVNKLDRQGASPENVIGQLRD 191
                 47777777777777777.7***********************************************************************999864 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0051
   TIGR00487 266 vieakldkgr.GpvatvlvqeGtLkvGDivvvga.....ayGkvramidekGksvkeagPsiaveilGls 329
                 ++  kld +r G+++ + v +GtLk+G+ +   +     +  ++  m+++  ++++eag   +v + G++
  MMETSP1061-20121228|6965_1 348 ALAFKLDETRfGQLTYMRVYQGTLKKGNYITNVNsgkkiKLARIVRMHSDDMEEIDEAGAGEVVAMFGVD 417
                 566778888779999999**********987543111125678889******************999986 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   2.6e-14   7.7e-12      13     140 ..      46     177 ..      38     202 .. 0.84
   2 ?   -1.3   0.1      0.52   1.5e+02     181     209 ..     297     323 ..     240     416 .. 0.63

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 2.6e-14
   TIGR00485  13 vnvgtighvdhgkttltaaittvlakegk.....aaakkydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdl 140
                  n+g   h+d gkttlt  i     k ++     ++     ++d+   e+++giti++a    + ++ h   +d pgh d+  ++      +dg++lv+++  g+  q+       ++  vp+l  f+nk d 
  MMETSP1061-20121228|6965_1  46 RNIGISAHIDSGKTTLTERILYYTGKINSihdvrGKDGVGAKMDSMELEREKGITIQSAATFCQWKDSHINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSGVQSQSLTVDRQMKRYDVPRL-AFVNKLDR 177
                 59****************997655543331001134444557899999*************************************99999******************999888899999**97.69999985 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.52
   TIGR00485 181 gdaeweekilelmeavdeyiptperevdk 209
                 g+a  ++ ++ l++ v +y+p+p+ +  k
  MMETSP1061-20121228|6965_1 297 GSAFKNKGVQPLLDGVIDYLPEPKEK--K 323
                 44444455666666666666666543..2 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.1   9.6e-14   2.8e-11       8     124 ..      46     151 ..      39     178 .. 0.83
   2 ?   -0.3   0.0      0.21        62     242     290 ..     359     411 ..     352     428 .. 0.74

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 9.6e-14
   TIGR00483   8 lnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgele 124
                  n+ +  h+dsgk+tl+ r+ly +g+i+   ++      + +gk ++     +d ++ ere+g+ti+ a +  + +  ++ i+d+pgh df  ++       d  vlv+ + +g ++
  MMETSP1061-20121228|6965_1  46 RNIGISAHIDSGKTTLTERILYYTGKINS--IH------DVRGKDGVG--AKMDSMELEREKGITIQSAATFCQWKDSHINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSG-VQ 151
                 4888999*******************985..44......335666554..469*****************************************99999999****99988777.33 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.21
   TIGR00483 242 gtvpvgrvetgvlkkgekvvfepagvsgev.ksiemhh...eqieqaepgdni 290
                 g +   rv  g lkkg+ ++   +g   ++ + + mh    e+i++a  g+ +
  MMETSP1061-20121228|6965_1 359 GQLTYMRVYQGTLKKGNYITNVNSGKKIKLaRIVRMHSddmEEIDEAGAGEVV 411
                 66667799************999999887625678997222455566666655 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1   6.3e-09   1.8e-06       8     121 ..      53     154 ..      45     176 .. 0.85
   2 !    7.0   0.0    0.0019      0.55     239     282 ..     366     413 ..     357     456 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 6.3e-09
   TIGR02034   8 svddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqt 121
                  +d Gk+tl  r+l+ t +i       ++ d + k+  g        +d ++ ere+giti  a  + + +  +  + dtPGh+ +t ++  +    d  vl++    Gv++q 
  MMETSP1061-20121228|6965_1  53 HIDSGKTTLTERILYYTGKINS-----IH-DVRGKDGVG------AKMDSMELEREKGITIQSAATFCQWKDSHINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSGVQSQS 154
                 6899999999999999988753.....33.444443333......457999***************9999999999**************999999999999999999999885 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0019
   TIGR02034 239 iasGsvkvGdevvvlpsgresrvarivtfdg....elekaeaGeavtl 282
                 +  G++k+G+ ++ ++sg++ ++ariv ++     e+++a aGe v++
  MMETSP1061-20121228|6965_1 366 VYQGTLKKGNYITNVNSGKKIKLARIVRMHSddmeEIDEAGAGEVVAM 413
                 567999*********************986521225789999998876 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   8.9e-09   2.6e-06       2     117 ..      47     179 ..      46     206 .. 0.85
   2 ?   -2.0   0.0      0.78   2.3e+02     198     241 ..     366     413 ..     361     423 .. 0.68

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 8.9e-09
   TIGR00475   2 iiataGHvDHGKttLlkal...tg.id..............adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvd 117
                 +i+++ H+D GKttL   +   tg i+               d +  E+ +G+ti    ++ + +d  +++iD PGH  f  ++  ++  +d+ +Lv     Gv++q     + +k  +++  ++ ++K+Dr  
  MMETSP1061-20121228|6965_1  47 NIGISAHIDSGKTTLTERIlyyTGkINsihdvrgkdgvgakMDSMELEREKGITIQSAATFCQWKDSHINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSGVQSQSLTVDRQMKRYDVP-RLAFVNKLDRQG 179
                 68999**********98774444434477788899999876677778999*********************************************************98888888888899.778889999864 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.78
   TIGR00475 198 afsGevkvgDelvlepinkkvr...vkalqaqn.qsvekavAGqRial 241
                 +++G+ k g+ +     +kk++   +  +++ +  + ++a AG+ +a+
  MMETSP1061-20121228|6965_1 366 VYQGTLKKGNYITNVNSGKKIKlarIVRMHSDDmEEIDEAGAGEVVAM 413
                 688999999988877788887611144556554135678999999987 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.3e-06   0.00068       6     118 ..      46     150 ..      41     160 .. 0.81
   2 ?   -3.6   0.0       3.5     1e+03     172     204 ..     292     324 ..     285     327 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.3e-06
   TIGR03680   6 vniglvGhvDhGkttlvkal...tGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneev 118
                  nig+  h+D Gkttl++ +   tG+  + h    k g+  k+  +        e+e+++ +t ++ ++ c+ +     ++ ++D+PGh  + + +     ++dg +Lv+     v
  MMETSP1061-20121228|6965_1  46 RNIGISAHIDSGKTTLTERIlyyTGKINSIHDVRGKDGVGAKMDSM--------ELEREKGITIQSAATFCQWKD---SHINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSGV 150
                 69***************9866669***************9997544........445556677777777787444...5799*******999999999999*******98766555 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3.5
   TIGR03680 172 apiiPvsalkkvnidvllealekeiptperdld 204
                  p+   sa k+  ++ ll+ + +++p+p+++++
  MMETSP1061-20121228|6965_1 292 VPVFMGSAFKNKGVQPLLDGVIDYLPEPKEKKN 324
                 4555669*********************98765 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   4.1e-06    0.0012      11     133 ..      52     177 ..      46     184 .. 0.78
   2 ?   -3.1   0.0       1.4     4e+02     251     267 ..     365     381 ..     353     416 .. 0.60

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.1e-06
   TIGR00491  11 GhvdhGkttlldkir..ktrvakreaGgitqhiGaseiPidvikr..lcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
                  h+d Gkttl ++i     ++ +         +Ga    +++ ++  ++ +   +   + k   + +idtPGh  ft    r   + d  +lv+  + G++ q+      ++++ +P +   nk+dr
  MMETSP1061-20121228|6965_1  52 AHIDSGKTTLTERILyyTGKINSIHDVRGKDGVGAKMDSMELEREkgITIQSAAT-FCQWKDSHINIIDTPGHVDFTVEVERALRVLDGGVLVLCGVSGVQSQSLTVDRQMKRYDVPRLAFVNKLDR 177
                 6999999999999962234555555555567788877666655440044444433.3577778899***************************************99999****************8 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.4
   TIGR00491 251 iiydGilkkgdilvval 267
                  +y+G+lkkg+++    
  MMETSP1061-20121228|6965_1 365 RVYQGTLKKGNYITNVN 381
                 46777777777765333 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0    0.0006      0.18      31     123 ..      96     180 ..      92     227 .. 0.83
   2 ?    3.4   0.0     0.023       6.6     306     344 ..     276     314 ..     266     337 .. 0.68

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0006
   TIGR03594  31 tpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnkke 123
                 ++g+T     + +++k+ ++++iDT+G          + + ++e a++  d  ++v+ + +g++++  ++ + +++++ p +  vNK+d++ +
  MMETSP1061-20121228|6965_1  96 EKGITIQSAATFCQWKDSHINIIDTPGHV--------DFTVEVERALRVLDGGVLVLCGVSGVQSQSLTVDRQMKRYDVPRLAFVNKLDRQGA 180
                 67888888899999999999999999983........34445677777778888888888899999999999999999999999999998744 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.023
   TIGR03594 306 eelkkeleeklkflkfapivfiSAltgkgveklleaike 344
                 e+lk  ++++   ++f+p+++ SA ++kgv+ ll+ + +
  MMETSP1061-20121228|6965_1 276 ETLKAAIRRRTISCEFVPVFMGSAFKNKGVQPLLDGVID 314
                 556666777777777777777777777777766665543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.59u 0.13s 00:00:00.72 Elapsed: 00:00:00.50
# Mc/sec: 1961.36
//
Query:       MMETSP1061-20121228|6967_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 2338.85
//
Query:       MMETSP1061-20121228|6970_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-28   98.3   0.0    2.2e-19   67.7   0.0    2.3  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
    2.7e-16   57.5   0.0    5.3e-12   43.6   0.0    2.5  2  TIGR00678 holB: DNA polymerase III, delta' subunit
    1.6e-13   47.9   0.0    8.7e-12   42.2   0.0    2.7  3  TIGR00602 rad24: checkpoint protein rad24
    1.7e-11   41.2   0.0      1e-05   22.1   0.0    2.4  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
    4.1e-10   36.7   0.0    1.9e-06   24.6   0.0    2.1  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
    4.1e-06   23.7   0.3    0.00055   16.7   0.0    2.3  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    7.5e-05   19.7   0.0    0.00012   19.0   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00029   17.4   0.0    0.00044   16.7   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00038   17.9   0.0    0.00084   16.8   0.0    1.5  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.002   14.2   0.0     0.0032   13.6   0.0    1.2  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
  ------ inclusion threshold ------
      0.018   11.3   0.0      0.028   10.7   0.0    1.2  1  TIGR00376 TIGR00376: putative DNA helicase
      0.035   11.9   0.0      0.073   10.9   0.0    1.5  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   7.3e-10   2.5e-07       6      53 ..      57     103 ..      53     115 .. 0.89
   2 !   67.7   0.0   6.6e-22   2.2e-19      89     223 ..     121     257 ..     114     267 .. 0.91

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 7.3e-10
   TIGR02397   6 rkyrPktFedliGqehvvktLknaikknkiahayLfsGprGvGKTsiA 53 
                  kyrP+++e+l+ +e++++++++ i+++ + h  L++Gp G+GKTs+ 
  MMETSP1061-20121228|6970_1  57 EKYRPERLEQLVAHEQIINIITTMIDSDNLPHL-LLYGPPGTGKTSTI 103
                 7******************************95.789*********85 PP

  == domain 2    score: 67.7 bits;  conditional E-value: 6.6e-22
   TIGR02397  89 iEiDaAsnngvddir.ellenvkyapsksk.ykvYiiDEvhmLsksafnaLLKtlEePpehvvFilaTtelekipetilSRcqrfdfkkikeekiverlkkilkkekikveeeaLeliarkaeGslRDalslldqli 223
                 +E++a   +g+d +r e++e +  +   ++  k  i+DE+  ++++a  aL +++E+  ++  F l+   ++ki+  + SRc rf+f  +  ++i  rl++i+k+e++ v e+++++i + + G +R  l+ll+  +
  MMETSP1061-20121228|6970_1 121 LELNASDARGIDVVRnEIKEFAGTQQLFARgIKLIILDEADAMTSDAQFALRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLGPHQIRGRLEEIAKQESVPVTEDGIRAILDLSGGDMRRVLNLLQSTA 257
                 699***********944777666666554438****************************************************************************************************98654 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   9.4e-05     0.032       4      41 ..      77     113 ..      74     128 .. 0.84
   2 !   43.6   0.0   1.5e-14   5.3e-12      77     183 ..     130     244 ..     119     249 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.4e-05
   TIGR00678   4 lkralekgrlahAlLfaGpeGvGkealaealakallCe 41 
                 +++++++++l+h lL++Gp+G+Gk++++ a ak++   
  MMETSP1061-20121228|6970_1  77 ITTMIDSDNLPH-LLLYGPPGTGKTSTIVAAAKRMYGA 113
                 667788888888.789*****************99876 PP

  == domain 2    score: 43.6 bits;  conditional E-value: 1.5e-14
   TIGR00678  77 kvdqvreleeelsktple..sgrrvviiedaealneaaaNaLLKtLEEPpektlflLisespekllpTirSRcqrlslqplseeelaevleeqgkee......eaaeallalagg 183
                 ++d vr+ ++e++ t++    g +++i+++a+a+++ a+ aL  ++E  ++++ f Li++ ++k++p ++SRc r++++pl  ++++  lee  k+e        ++a+l l+gg
  MMETSP1061-20121228|6970_1 130 GIDVVRNEIKEFAGTQQLfaRGIKLIILDEADAMTSDAQFALRRVIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFAPLGPHQIRGRLEEIAKQEsvpvteDGIRAILDLSGG 244
                 6889997777777666651156799*************************************************************99999976655455553445555666655 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   2.5e-14   8.7e-12      61     133 ..      42     109 ..      18     126 .. 0.90
   2 ?   -0.2   0.0      0.17        58     197     233 ..     153     188 ..     139     199 .. 0.79
   3 ?    1.7   0.0     0.044        15     267     331 ..     200     257 ..     192     298 .. 0.79

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 2.5e-14
   TIGR00602  61 lelsklkedenelWveKykPetqeelAvHKkKieeveewlkaqvLeskkkriLLitGPsGCgKsTvikiLsKe 133
                    ++ +++ n +WveKy+Pe +e+l  H + i+ + + ++++ L++     LL+ GP+G gK+ +i   +K 
  MMETSP1061-20121228|6970_1  42 ARQKQSRDNSNLPWVEKYRPERLEQLVAHEQIINIITTMIDSDNLPH-----LLLYGPPGTGKTSTIVAAAKR 109
                 456677899999***********************************.....**************9888875 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.17
   TIGR00602 197 klIlvedlPnkFyrdtd.alrevlrtkyvsegrlplvl 233
                 klI++++       d + alr v+  ky+++ r+ l+ 
  MMETSP1061-20121228|6970_1 153 KLIILDEADA-MTSDAQfALRRVIE-KYTKNARFCLIC 188
                 8888888755.55666669******.********9885 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.044
   TIGR00602 267 prvsnikFNPiapTllkKfLkrIvtkeakkkkeKilvpkktsvedlcaaesGDiRSAInsLQfss 331
                  r ++ +F P+ p  ++  L+ I ++e ++  e  +         ++  + GD+R  +n LQ  +
  MMETSP1061-20121228|6970_1 200 SRCTRFRFAPLGPHQIRGRLEEIAKQESVPVTEDGIR-------AILDLSGGDMRRVLNLLQSTA 257
                 688999*********************9999887665.......677788999999999999655 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   3.1e-08     1e-05     147     191 ..      58     102 ..      44     117 .. 0.89
   2 !   16.2   0.0   1.8e-06   0.00063     334     395 ..     191     253 ..     171     260 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 3.1e-08
   TIGR02903 147 llrpralseivGqeraikallaklaspfpqhiilyGppGvGktta 191
                   rp+ l+++v  e+ i+ + + + s    h++lyGppG Gkt++
  MMETSP1061-20121228|6970_1  58 KYRPERLEQLVAHEQIINIITTMIDSDNLPHLLLYGPPGTGKTST 102
                 57****************************************975 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 1.8e-06
   TIGR02903 334 peeinpalrsrcaevffepltpedikeivlkaaeklnvkla.egveeliarytieGrkavnil 395
                  ++i pal+src+   f pl+p++i+  +++ a++ +v ++ +g+++++     + r+ +n+l
  MMETSP1061-20121228|6970_1 191 VSKIIPALQSRCTRFRFAPLGPHQIRGRLEEIAKQESVPVTeDGIRAILDLSGGDMRRVLNLL 253
                 57899****************************999998751567777666667777777777 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   5.5e-09   1.9e-06      53     102 ..      53     102 ..      41     129 .. 0.87
   2 !   10.1   0.0   0.00014     0.047     245     318 ..     192     265 ..     166     312 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 5.5e-09
   TIGR02902  53 eplseksrpksfdeiiGqeeGikalkaalcGpnpqhviiyGppGvGktaa 102
                  p  ek rp+ +++++  e+ i+ + + +   n  h+++yGppG Gkt++
  MMETSP1061-20121228|6970_1  53 LPWVEKYRPERLEQLVAHEQIINIITTMIDSDNLPHLLLYGPPGTGKTST 102
                 5899*******************************************975 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00014
   TIGR02902 245 eeippalrsrcveiffrelekeeikeiakkaaekiglslekealeliakya.snGreavnlvqlaaGlalnenrk 318
                  +i pal+src    f +l  ++i+   ++ a++  + + ++++  i   +  + r ++nl+q +a + l+ +r 
  MMETSP1061-20121228|6970_1 192 SKIIPALQSRCTRFRFAPLGPHQIRGRLEEIAKQESVPVTEDGIRAILDLSgGDMRRVLNLLQSTA-MSLGGERD 265
                 5799**************************************999887765157899*****9655.66666665 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.6e-06   0.00055      25      70 ..      71     116 ..      55     153 .. 0.71
   2 !    5.1   0.1    0.0056       1.9     130     255 ..     152     260 ..     145     351 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.6e-06
   TIGR02928  25 eelakalkpilrgsrpsnvliyGktGtGKtavtkkvlkeleeaaee 70 
                 e++ +++  +++  + + +l+yG++GtGKt+++ +  k++  a++ 
  MMETSP1061-20121228|6970_1  71 EQIINIITTMIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYGASRY 116
                 556677888888889999***************9999998877765 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0056
   TIGR02928 130 sliivLDEiDklvkkeadelLyeLsraeengdlekakvsvigisndlkfleeldervksslseeeivFppYdaeeLrdILeeRaekafkdgv.lddeviplvaalaaqehGdaRkAidlLreageiA 255
                 + +i+LDE D +     ++  + L r+  ++++++a+ ++i   n    ++++ +  +s+   + + F p + +++r  Lee a+   +++v ++++ i+ + +l   + Gd R+ ++lL+  +   
  MMETSP1061-20121228|6970_1 152 IKLIILDEADAM----TSDAQFALRRV-IEKYTKNARFCLI--CNY---VSKIIPALQSRC--TRFRFAPLGPHQIRGRLEEIAK---QESVpVTEDGIRAILDL---SGGDMRRVLNLLQSTAMSL 260
                 56899*******....44445899999.4555555555554..554...455566666654..4678888888888888887776...55554778777755554...5788999999987654443 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.6e-07   0.00012      18      54 ..      74     110 ..      62     128 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.6e-07
   TIGR00635  18 lfikaakkrkealdhvllyGPPGlGkttlakiiakel 54 
                 + i ++   +++l h+llyGPPG Gkt+     ak +
  MMETSP1061-20121228|6970_1  74 INIITTMIDSDNLPHLLLYGPPGTGKTSTIVAAAKRM 110
                 445556667899***************9776666666 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.3e-06   0.00044     313     338 ..      87     112 ..      77     124 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-06
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaG 338
                  Hlll GPPGtGkt++  + ak + G
  MMETSP1061-20121228|6970_1  87 PHLLLYGPPGTGKTSTIVAAAKRMYG 112
                 5**************99999997766 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.4e-06   0.00084      23     202 ..      71     253 ..      55     267 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.4e-06
   TIGR03420  23 aellaalrelaeakaerllylwGesgsGksHLLqAacaaaeea.gksaiylplkelaqllvev.......leg.....leqaelvalDdvealagereweealfdlynrlresgrkllvageaaPaelklrlpDLrtRlawglvfqlkplsdeeklaaLqeraaerGleLpdevaeyllkrlsrdlrsLlelL 202
                 +++++ ++ + ++++  +l l+G++g+Gk+  + Aa++++  a    ++ l+l+      ++v       ++g     ++ ++l++lD+ +a+++++  + al  ++ + +++ r  l++   +     + +p L++R   ++ f+ +pl  ++    L+e a++  + ++++ ++ +l  +  d+r  l+lL
  MMETSP1061-20121228|6970_1  71 EQIINIITTMIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYGAsRYGSMTLELNASDARGIDVvrneikeFAGtqqlfARGIKLIILDEADAMTSDA--QFALRRVIEKYTKNARFCLICNYVSK----I-IPALQSR---CTRFRFAPLGPHQIRGRLEEIAKQESVPVTEDGIRAILDLSGGDMRRVLNLL 253
                 67888888889999999************9988888887765414456666666655554443222223333311111456899*************..**********9999998888755432....2.2555565...4566666666666666666666666666666666666666666666666665 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   9.2e-06    0.0032     599     625 ..      89     115 ..      64     127 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.2e-06
   TIGR03345 599 FllvGpsGvGktetalalAellyGgeq 625
                  ll Gp G+Gkt t +a A  +yG+ +
  MMETSP1061-20121228|6970_1  89 LLLYGPPGTGKTSTIVAAAKRMYGASR 115
                 699*********************987 PP

>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   8.1e-05     0.028     171     192 ..      81     104 ..      49     111 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8.1e-05
   TIGR00376 171 vsskdl..aliHGPpGtGktrtlv 192
                 + s++l   l++GPpGtGkt t+v
  MMETSP1061-20121228|6970_1  81 IDSDNLphLLLYGPPGTGKTSTIV 104
                 55555533699***********98 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00021     0.073     200     221 ..      88     109 ..      54     120 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00021
   TIGR03499 200 viaLvGptGvGKTTTlAKLAar 221
                  ++L Gp+G GKT T++  A r
  MMETSP1061-20121228|6970_1  88 HLLLYGPPGTGKTSTIVAAAKR 109
                 478*************865555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      196  (0.0477816); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 1346.29
//
Query:       MMETSP1061-20121228|6978_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 441.88
//
Query:       MMETSP1061-20121228|6975_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2940.17
//
Query:       MMETSP1061-20121228|6973_1  [L=818]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-10   37.3   0.2    2.7e-05   20.0   0.0    2.6  3  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
       0.31    7.0   3.6        0.7    5.8   2.5    1.6  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0     0.051     1e+02       5      42 ..     419     460 ..     416     462 .. 0.81
   2 !   14.2   0.0   7.5e-07    0.0015      83     116 ..     598     631 ..     592     677 .. 0.67
   3 !   20.0   0.0   1.3e-08   2.7e-05     136     186 ..     738     788 ..     715     792 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.051
   TIGR03903   5 kvaikllRedaaeeerlvaR....FrReialCarLshPniva 42 
                 +v++k+l  + +e+ rl+a       Re    a+LshP+i +
  MMETSP1061-20121228|6973_1 419 NVVVKILQPKLMENPRLFANcaagLIREGLFLAALSHPHILE 460
                 799999999999999998762222679*************86 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 7.5e-07
   TIGR03903  83 rLmlqvLDalaaahdaGvvhRDLkPqnimvsaad 116
                  L+lq  D++   h++ ++hRDLkP+n+ v+ + 
  MMETSP1061-20121228|6973_1 598 GLLLQLTDTVKYLHKHRILHRDLKPDNLGVTYSH 631
                 599*************************998653 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 1.3e-08
   TIGR03903 136 edadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                  + + ++l + t  +GsP Y aPe  Rge+   +s++Y+ GL+v e Lt +
  MMETSP1061-20121228|6973_1 738 ANQNGEKLFQMTGKMGSPRYMAPEIARGEAYNLRSEVYTVGLLVHEVLTLQ 788
                 45556677888899**********************************965 PP

>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   2.5   0.00034       0.7     490     610 ..     163     287 ..     123     307 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00034
   TIGR00844 490 egqigvrtsglvaapalgmrrrrrqklrdkkeieddie.lndlgrerlqkekearaatidlstavte...qlgeeigragdleere..kvnikerseavntiysldklaedtenkdvtrvetsrvdg 610
                   ++++ +sgl+      +r+ rr+kl++k++ ++ ++  ++  +++ q ++e++ +t+d++   ++    +g++   +  l + +   v + er     +   l + ++ t+ + + r +tsr + 
  MMETSP1061-20121228|6973_1 163 RARVESDSSGLIPFCDKLIRK-RRKKLKQKQQKQQKQQqKQQKQQKQQQTDHEQHQSTNDINPNRATpecIKGTDLVLGACLGQGSfsSVFVLERHRRR-SSNQLADDSDATQVRRKGRRPTSRSSS 287
                 457788899999887766655.577888776655554404556677788899*******9975433211145565555544444330033334443332.223333344444445555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       541  (0.131887); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.40
# Mc/sec: 2699.18
//
Query:       MMETSP1061-20121228|6980_1  [L=361]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.4   6.0      0.023   11.9   4.2    1.1  1  TIGR01136 cysKM: cysteine synthases
      0.023   11.2   4.3       0.03   10.8   3.0    1.1  1  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   4.2   1.1e-05     0.023     117     221 ..     135     242 ..     111     245 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.1e-05
   TIGR01136 117 gaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgkidafvagvGt..gGtitGvgrvlkekkp....nvkivavePaespvlsegkpgphkiqgigagf 221
                 +a+++ +   +++ ++    +  +N++N+++H++tt++E+ k   ++i+  +a +      +  G+ + l++++     +++ va +     + +  k ++h++ + +++f
  MMETSP1061-20121228|6980_1 135 AARNHGN---NNNNSSNNNSNNNNNNNNTNYHKTTTTEELQKAQREQIEEAIAMMARqmKESTKGIQNRLQQQTGttlnQLETVAEQNVAEVTSVADKVQTHNVARKKNAF 242
                 2222222...222333445677889999*********************99998875115678899999988875544467777777666666666677888777766655 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   3.0   1.5e-05      0.03     145     277 ..     123     271 ..     104     284 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.5e-05
   TIGR00437 145 elkkaide....ekaiklvekkkraieilkeaeslaevkeklkelkqkl.kkglevleglleeraleiekiekelaevvkkesesklsateiadee..........kvlveksigtkvld...rflglliilsvvfllllltflvgealsd 277
                 +l+ a++e      +++  ++++   + +++ +++++++ + ++++++l k + e +e+ +  +a++++++ k +++ ++++  + l+++e++ e+          kv++++   +k  +    f  l++++++  + ll +f++ +   +
  MMETSP1061-20121228|6980_1 123 RLRTAMKEeaarAARNHGNNNNNSSNNNSNNNNNNNNTNYHKTTTTEELqKAQREQIEEAIAMMARQMKESTKGIQNRLQQQTGTTLNQLETVAEQnvaevtsvadKVQTHNVARKK--NafsSFATLIVLVGIFAVALLTVFTIPKSPDA 271
                 444444431111222222222222222333333333333333333333334444444444444444555555555555555555555555555555566655555555555555444..13335666666555555666667777666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (361 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       658  (0.16041); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 1588.27
//
Query:       MMETSP1061-20121228|6974_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-08   28.4   0.9     0.0021   13.8   0.0    2.1  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    0.00011   18.4   3.9     0.0053   12.8   0.5    2.1  2  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
  ------ inclusion threshold ------
      0.047   11.1   4.2       0.28    8.5   0.1    3.1  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   2.1e-06    0.0029     594     638 ..      98     142 ..      46     158 .. 0.57
   2 !   13.8   0.0   1.5e-06    0.0021     607     688 ..     181     268 ..     156     277 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.1e-06
   TIGR02917 594 adlapdspellellgraqlaakdlkkavesfkkllelqpdsalal 638
                   l +ds ++  llgr + aa+d k a++++ ++l+++p + +al
  MMETSP1061-20121228|6974_1  98 GSLVKDSDRYRRLLGRCLEAASDYKGAMAVYDEMLKRNPSNVVAL 142
                 334455555555555555555555555555555555555555554 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 1.5e-06
   TIGR02917 607 lgraqlaakdlkkavesfkkllelqpdsalalllladvyava...knkakAltslkkaLelkpdnteaqlllaqLl...leekrleeA 688
                 + ++ l   d+k a  ++++++   p  a ++ +la+vya+    + +a A++ + +aLel+p n++aql+l++     l+e + ++A
  MMETSP1061-20121228|6974_1 181 MCQLRLSVADFKGAAYALEQVVLGSPLDADIHRELAEVYATIgglEHTACARKHMAQALELEPRNLRAQLGLVSVSqqfLDESDASSA 268
                 5566777889999999999999999**************996333789999******************9998775111445555555 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.5   3.9e-06    0.0053     127     200 ..      65     151 ..      53     173 .. 0.86
   2 !    6.8   0.1   0.00026      0.36     403     472 ..     183     255 ..     178     285 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.9e-06
   TIGR03939 127 altladagkdeeAlkalkelkerfp.............sdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltr 200
                  l++ d+++++ A+k l++lk++ +             ++  +++ l++ l+aa d+ +a+a+++++l+++P+n  +l++++ +l++
  MMETSP1061-20121228|6974_1  65 CLAAIDKNDHALAQKCLAQLKSSSAavsegnaegslvkDSDRYRRLLGRCLEAASDYKGAMAVYDEMLKRNPSNVVALQRKYCVLRS 151
                 5788999999999999999999888999999999999777788899**********************************9999973 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00026
   TIGR03939 403 lllaysgdlseAekkleellatAPgNqslrlalaeveraRg...wprrAeqllkkaeslepdslsaergqaet 472
                 +l+    d++ A  +le++    P ++++  +laev+++ g   ++  A + + +a  lep++l a+ g+  +
  MMETSP1061-20121228|6974_1 183 QLRLSVADFKGAAYALEQVVLGSPLDADIHRELAEVYATIGgleHTACARKHMAQALELEPRNLRAQLGLVSV 255
                 5666778999***************************9975444788899999999999****9999887655 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1     0.085   1.2e+02     135     162 ..      58      85 ..      52     102 .. 0.83
   2 ?   -0.6   0.0      0.12   1.7e+02     141     173 ..     111     143 ..      89     170 .. 0.81
   3 ?    8.5   0.1   0.00021      0.29      46      99 ..     190     246 ..     185     249 .. 0.86
   4 ?    8.5   0.1   0.00021      0.28      35      87 ..     213     268 ..     208     278 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.085
   TIGR02521 135 arsyeNaglcalkagdtekaekyltral 162
                  +++e + l a +++d++ a+k l ++ 
  MMETSP1061-20121228|6974_1  58 VAALEQICLAAIDKNDHALAQKCLAQLK 85 
                 5789999999999999999999998875 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.12
   TIGR02521 141 aglcalkagdtekaekyltralkidpkrpesll 173
                 +g c+ +a d + a +   + lk +p++ ++l+
  MMETSP1061-20121228|6974_1 111 LGRCLEAASDYKGAMAVYDEMLKRNPSNVVALQ 143
                 578888888888888888888888888777765 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.00021
   TIGR02521  46 dlekAkenlekAleldpkdadanlalAlyyqqlg...elekAeesfrkAltlkpnng 99 
                 d++ A ++le+ +   p dad +  lA +y ++g   ++  A ++  +Al+l+p n 
  MMETSP1061-20121228|6974_1 190 DFKGAAYALEQVVLGSPLDADIHRELAEVYATIGgleHTACARKHMAQALELEPRNL 246
                 77889999**************************6644556899999*****99885 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.00021
   TIGR02521  35 vqLaleYleqg...dlekAkenlekAleldpkdadanlalAlyyqqlgelekAees 87 
                  +La  Y   g   +++ A++ + +Alel+p + +a+l l  + qq  +++ A  +
  MMETSP1061-20121228|6974_1 213 RELAEVYATIGgleHTACARKHMAQALELEPRNLRAQLGLVSVSQQFLDESDASSA 268
                 55666666555222566799********************9999999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1390.29
//
Query:       MMETSP1061-20121228|6981_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-48  160.4   0.1    1.2e-40  137.0   0.0    2.1  2  TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase


Domain annotation for each model (and alignments):
>> TIGR00151  ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   7.4e-09     3e-05       1      29 [.      77     109 ..      77     119 .. 0.82
   2 !  137.0   0.0   2.8e-44   1.2e-40      19     154 ..     121     255 ..     108     256 .. 0.94

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 7.4e-09
   TIGR00151   1 RiGlGfDvHrlveg....kplilgGveipeekg 29 
                 RiG+GfD+Hr+++     +p+++gGveip+++ 
  MMETSP1061-20121228|6981_1  77 RIGHGFDIHRMAPLeeagQPVVIGGVEIPHSDQ 109
                 9**********87544559**********9875 PP

  == domain 2    score: 137.0 bits;  conditional E-value: 2.8e-44
   TIGR00151  19 lgGveipeekgllahSdgDvllHaltdallgalalgdiGklfpdtdkewkgadsaklLkkvvellkekgykisnvdvtiiaerPKlapkieamrekiaelLeieldevnvkatteeklgltGrgegiaaqavvllv 154
                  gG+  +++ g++ahSdgDv+ H+++da+ gal+l diG++f+dtd++wkg ds +++++++ ++++ gy+i+n+dvt+i erPK+a  ++ m+++i +lL++   +vn+ka+t+e+l  +G+   +++++ ++l 
  MMETSP1061-20121228|6981_1 121 KGGI-YETQLGVVAHSDGDVIYHSVVDAIFGALTLPDIGQVFQDTDPRWKGCDSSRFMEHAHVVMTDYGYRIGNIDVTLILERPKVASFKPGMKDNIVRLLQTTPGRVNIKARTHERLDSVGELRSLSCHVCLTLE 255
                 5665.46788*************************************************************************************************************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|6985_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|6990_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 400.68
//
Query:       MMETSP1061-20121228|6991_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.37
# Mc/sec: 206.90
//
Query:       MMETSP1061-20121228|6988_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053   11.0   3.5       0.78    7.2   0.1    2.5  2  TIGR00056 TIGR00056: conserved hypothetical protein
        2.4    4.3   7.6        3.4    3.8   5.2    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR00056  TIGR00056: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.1   0.00038      0.78      58      84 ..       7      33 ..       2      42 .. 0.84
   2 ?    3.9   0.4    0.0039       7.9     148     216 ..     254     319 ..     252     330 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00038
   TIGR00056 58 ivlvtslliGmvlalqgalelqafgAe 84
                ++l+t+l +Gmv+a+q a+ ++ f  e
  MMETSP1061-20121228|6988_1  7 LLLLTALYVGMVVAIQYASPVECFTLE 33
                689**************9988877655 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0039
   TIGR00056 148 vlAlvivlPlLtvlslvvgilGGalvakkllgidselfleklqdavekwdllaglvKavffgvaialig 216
                 vl + + +P+ +v+++v+    G+l  + +  +d   f+ + qd  e w+l+ g v    +++++++  
  MMETSP1061-20121228|6988_1 254 VLVMGLPTPIAAVIATVAQWTAGSLFLVAFAVVD--AFVATRQDYFEAWNLVYGTVF-YHWAMLVTACC 319
                 56677889******************99999887..699**************9884.45777777654 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   5.2    0.0017       3.4     326     377 ..     372     423 ..     350     433 .. 0.44

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0017
   TIGR02442 326 leekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeea 377
                 +ee++++++ + eke + + ++++++k+q++e+  +d+e+++  +++ + ++
  MMETSP1061-20121228|6988_1 372 KEEREQRRERKREKERQRHGQQQQQQKQQQKEQLPRDEENDPGRTQPPSTQK 423
                 2222222222222222221122222222223333334444444444433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2045.83
//
Query:       MMETSP1061-20121228|6992_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|6997_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-05   19.7   0.0    5.2e-05   19.6   0.0    1.0  1  TIGR00575 dnlj: DNA ligase, NAD-dependent


Domain annotation for each model (and alignments):
>> TIGR00575  dnlj: DNA ligase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.3e-08   5.2e-05      18      48 ..      22      52 ..      18      75 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.3e-08
   TIGR00575 18 psisDaeyDallrelkeleekhPelktpdSp 48
                 +isD+e+Dal+r+ +ele+khPe+ +++  
  MMETSP1061-20121228|6997_1 22 AAISDDEFDALVRREEELETKHPEFLRAWRI 52
                579*********************9987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 514.76
//
Query:       MMETSP1061-20121228|7000_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 716.51
//
Query:       MMETSP1061-20121228|6989_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2305.10
//
Query:       MMETSP1061-20121228|6995_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-61  203.0   1.5    6.8e-61  202.8   1.0    1.0  1  TIGR01018 rpsD_arch: ribosomal protein S4
    1.5e-09   35.7   0.2    2.6e-09   35.0   0.1    1.4  1  TIGR01017 rpsD_bact: ribosomal protein S4
     0.0047   14.1   0.0     0.0073   13.5   0.0    1.3  1  TIGR00478 tly: hemolysin TlyA family protein
  ------ inclusion threshold ------
      0.035   10.1   0.3      0.045    9.7   0.2    1.1  1  TIGR01092 P5CS: delta l-pyrroline-5-carboxylate synthetase


Domain annotation for each model (and alignments):
>> TIGR01018  rpsD_arch: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.8   1.0   6.6e-64   6.8e-61       5     161 ..       8     166 ..       3     167 .. 0.96

  Alignments for each domain:
  == domain 1    score: 202.8 bits;  conditional E-value: 6.6e-64
   TIGR01018   5 rkarkkyetPkhPwekerlerekklvakyglrnkkelWkaetllrkyrraarellala..dekrkkeaeallkrlvrlGildeenaklddvlslkvedvlerrlqtlvykkGlaktikqarqlivhghiavdgrvvtsPsylvkkeeekkidfakssPl 161
                 r+ rk ++tP++P+eke l++e +lv++yglr k+e+W+++  l+k+r++ar+ll+l+  d+kr +e+ all+r++r+G+l +++++ld vl+l+ +++lerrlqt vyk+Glak+i++ar+li ++hi+v  + vt+Ps+ v+  +ek+idf+ +sP+
  MMETSP1061-20121228|6995_1   8 RNYRKTFTTPRRPFEKETLDAELRLVGEYGLRCKREIWRVQYALAKLRKSARTLLTLDpkDPKRIFEGAALLRRMNRYGLLADDEMELDAVLQLSTQKLLERRLQTKVYKQGLAKSIHHARVLIRQRHIRVGSQLVTVPSFNVRTASEKHIDFSVNSPY 166
                 445556***************************************************98899************************************************************************************************8 PP

>> TIGR01017  rpsD_bact: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.1   2.5e-12   2.6e-09      86     134 ..     105     153 ..      89     161 .. 0.93

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 2.5e-12
   TIGR01017  86 ellesRLDnvvyrlgfaktraaArQLvsHghilvngkkvdipsyqvkpg 134
                 +lle+RL + vy+ g+ak++++Ar L+   hi v  + v++ps+ v+  
  MMETSP1061-20121228|6995_1 105 KLLERRLQTKVYKQGLAKSIHHARVLIRQRHIRVGSQLVTVPSFNVRTA 153
                 68********************************************975 PP

>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.1e-06    0.0073       1      46 [.     110     155 ..     110     168 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.1e-06
   TIGR00478   1 rLdvlLvkrglvesRekakrlilkgevlvnkkkvdkPsalvdkdak 46 
                 rL++   k+gl++s ++a+ li++ ++ v ++ v+ Ps+ v + ++
  MMETSP1061-20121228|6995_1 110 RLQTKVYKQGLAKSIHHARVLIRQRHIRVGSQLVTVPSFNVRTASE 155
                 6788889*********************************986543 PP

>> TIGR01092  P5CS: delta l-pyrroline-5-carboxylate synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   4.4e-05     0.045     295     367 ..      54     125 ..      41     140 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 4.4e-05
   TIGR01092 295 aressrklqalsseerkeilhdladaleaneeeilaenekdvaaaeeagyeeslvarlalkpsklsslaislr 367
                  r+s+r l +l++++ k+i+   a +   n+  +la++e++++a  +   ++ l +rl  k  k + la+s+ 
  MMETSP1061-20121228|6995_1  54 LRKSARTLLTLDPKDPKRIFEGAALLRRMNRYGLLADDEMELDAVLQLSTQKLLERRLQTKVYK-QGLAKSIH 125
                 599*******************999999****************99998888888899888877.57888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 964.54
//
Query:       MMETSP1061-20121228|7002_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-07   26.7   8.5    7.2e-07   26.4   5.9    1.0  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein


Domain annotation for each model (and alignments):
>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   5.9   1.8e-10   7.2e-07     226     381 ..      11     160 ..       3     178 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.8e-10
   TIGR00883 226 llvlglviatsvlfYllttylasYlkktaklglsaesallvlllalillllviplsgllsdriGrrkvlilltvlaallavpllsallesssillvlllllllalivamytgvmaa.llaelfptevRytgvslaynlasviggglapviaaaLval 381
                 + v+++     + f  l ++l +++++    g++a++++l+ ++  ++ +l++pl+++l d  G   +  + ++l ++la+p++++  + + ++++++l+ ++  +v+++  + a+ l + +f +e+R +g sl  + a+ i g + p++   L ++
  MMETSP1061-20121228|7002_1  11 ISVMIFSQFAIAGFNNLGVFLVEFAQTH--YGVTANTSTLMQVVGKAVQVLMTPLAAMLGDIKGWFWTCAFGGTLCTVLALPMMVV-GNFGGVTAAWILVSGCLPVVSTFWILNAPlLATSVFTVEYRSRGTSLVLAAAAGIQG-FLPLV---LEEI 160
                 445555555566677899**********..46*****************************9998888888888888888776655.4477888888888888877777776666615578*************9999888877.44433...4333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 952.21
//
Query:       MMETSP1061-20121228|7001_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1487.42
//
Query:       MMETSP1061-20121228|7004_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1061-20121228|7003_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.49
# Mc/sec: 1697.00
//
Query:       MMETSP1061-20121228|7009_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1021.18
//
Query:       MMETSP1061-20121228|7010_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.5   2.2      0.028   12.3   0.5    1.8  2  TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family


Domain annotation for each model (and alignments):
>> TIGR02606  antidote_CC2985: putative addiction module antidote protein, CC2985 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.14   5.5e+02      11      20 ..      27      36 ..      23      49 .. 0.67
   2 ?   12.3   0.5   6.9e-06     0.028      16      58 ..      56     101 ..      54     107 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.14
   TIGR02606 11 esFiesqvqs 20
                ++Fi++ ++ 
  MMETSP1061-20121228|7010_1 27 TKFIDKSIAN 36
                5677776654 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6.9e-06
   TIGR02606  16 sqvqsGrYgsaSEVvRaaLRlleerEar...leaLraaiqeGeqsg 58 
                 s+v +G+Y++ + V    LR +e+++++    ++ +++i+   +sg
  MMETSP1061-20121228|7010_1  56 SEVTAGIYQTSDQVREHYLRQIEQQQQQqkqQQQQKQSIASASASG 101
                 6899*****988888889*****88877666677777777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       549  (0.133837); expected 82.0 (0.02)
Passed bias filter:                      357  (0.0870307); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 465.63
//
Query:       MMETSP1061-20121228|7006_1  [L=826]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-10   37.2   0.0    5.3e-10   36.6   0.0    1.2  1  TIGR01678 FAD_lactone_ox: sugar 1,4-lactone oxidases
    1.3e-08   32.0   0.0    2.2e-08   31.2   0.0    1.3  1  TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase
    0.00046   16.9   0.0     0.0007   16.3   0.0    1.1  1  TIGR01676 GLDHase: galactonolactone dehydrogenase
  ------ inclusion threshold ------
      0.017   11.8   0.0      0.025   11.2   0.0    1.2  1  TIGR00387 glcD: glycolate oxidase, subunit GlcD


Domain annotation for each model (and alignments):
>> TIGR01678  FAD_lactone_ox: sugar 1,4-lactone oxidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   5.2e-13   5.3e-10      17     178 ..     164     330 ..     150     354 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 5.2e-13
   TIGR01678  17 ryfqPksveevrellksareaekklkvvGsGhsPsdivv..t.dgyl.vsldkl...nkv..lkfdeekaditveaGirlyqlneildekGyslsnlGsisevsvaGiistgthgsslkhgllssqvvaltivladGellelseerdkdvfkaarvslGalGiivsvtirv 178
                   f P +  e+  ++k++++ +  ++++G+ hs   +v+  t ++++ ++l  +    kv   ++++e+    + aG   y++  ++  +G+  +   +    ++ G+++   hg +   g +   v++l ++++dGe++e++ + d d +   r s G lGii+ v ++v
  MMETSP1061-20121228|7006_1 164 PIFRPATDRELMKIIKHSKKYDCTVRTMGARHSQDGMVMqrTeEDFVvIRLHLIppkSKVggDSINRETSTFRIGAGRSWYDVSALIRPHGFVQHGRTTAQYFTIGGVMANMVHGGGRAIGFMHDDVIKLLVMTSDGEIKEVEGD-DLDYW---RSSAGLLGIILAVEMKV 330
                 5799********************************9974442456515666662224553235666688999*******************99999999999*************************************98754.55655...5689********99987 PP

>> TIGR01679  bact_FAD_ox: FAD-linked oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   2.1e-11   2.2e-08       1     172 [.     152     330 ..     152     334 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 2.1e-11
   TIGR01679   1 WsnWsGvqvaePaaivaPkdegeladvvkvaakp...vravGsGhsftdlak....tdGtlvslekl..egvv...dvdqqkdeatvkaGtrlgalgpllaekgrglenlgdidkqsigGalgtathGtGvklqalharvvslrlvtasGkvldlseaddqeiflaarvslGalGvisqvtlrt 172
                 W  W G + a+ a i +P+ + el +++k ++k    vr++G+ hs   ++      d +++ l+ +  +  v   ++++++   ++ aG     +  l+  +g   +     +  +igG ++   hG G  ++ +h +v  l ++t+ G++ ++ e+dd   +   r s G lG+i  v ++ 
  MMETSP1061-20121228|7006_1 152 WTTWEGGV-ATFAPIFRPATDRELMKIIKHSKKYdctVRTMGARHSQDGMVMqrteEDFVVIRLHLIppKSKVggdSINRETSTFRIGAGRSWYDVSALIRPHGFVQHGRTTAQYFTIGGVMANMVHGGGRAIGFMHDDVIKLLVMTSDGEIKEV-EGDD---LDYWRSSAGLLGIILAVEMKV 330
                 99999865.5567799***************998888*********99887522224779999987644334411134566777788888888999999988888888888888889***********************************998.6888...56678999******9999985 PP

>> TIGR01676  GLDHase: galactonolactone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   6.8e-07    0.0007      32     220 ..     133     327 ..     125     336 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.8e-07
   TIGR01676  32 khkkaqlfryaplpedlhtvsnwsgthevltrvflqpedleeleqvvktanekkarvrpvgsglspngiglsrlg....mvnlalm...dkvl..evdkekkrvrvqagirvqqlvdaikeygltlqnfasireqqiggivqvgahgtgaklppideqviamklvtpakgtieiskekdpelfylarcglgglgvvae 220
                 k+ k+q  r + l  +    + w g     + +f+ p +  el +++k++++    vr +g+  s +g+ + r      ++ l l+    kv    +++e  + r+ ag    ++   i+ +g+  +  ++ +   igg++    hg g  +  + ++vi +  v  + g i+  +  d + ++ + +gl g+ +  e
  MMETSP1061-20121228|7006_1 133 KKDKSQKHRCTHLVAEDGNWTTWEGGVATFAPIFR-PATDRELMKIIKHSKKYDCTVRTMGARHSQDGMVMQRTEedfvVIRLHLIppkSKVGgdSINRETSTFRIGAGRSWYDVSALIRPHGFVQHGRTTAQYFTIGGVMANMVHGGGRAIGFMHDDVIKLL-VMTSDGEIKEVEGDDLD-YWRSSAGLLGIILAVE 327
                 77888999999998888888999999888888875.66668899***************************9975332256677763223442225789999*******999999999******************************************985.55567777655544443.4455555554444444 PP

>> TIGR00387  glcD: glycolate oxidase, subunit GlcD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.5e-05     0.025      57     141 ..     228     310 ..     166     333 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.5e-05
   TIGR00387  57 ideenltavvqPGvinkeleeaveeknlfyppDPssqkastiGGniaen.aGGlrglkYGvtvdyvlglevvladGeilriggktv 141
                 i+ e  t ++  G    +++  + +++++     +  +  tiGG +a+   GG r++  G ++d v++l v++ dGei ++ g ++
  MMETSP1061-20121228|7006_1 228 INRETSTFRIGAGRSWYDVSALIRPHGFVQHG-RTTAQYFTIGGVMANMvHGGGRAI--GFMHDDVIKLLVMTSDGEIKEVEGDDL 310
                 66666666666666666777777777766544.34556789***9987526888876..99****************988665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 3114.94
//
Query:       MMETSP1061-20121228|7005_1  [L=946]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.30
# Mc/sec: 4162.06
//
Query:       MMETSP1061-20121228|7012_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 2918.43
//
Query:       MMETSP1061-20121228|7013_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-20   70.9   0.2    3.2e-20   70.1   0.1    1.5  1  TIGR03677 rpl7ae: 50S ribosomal protein L7Ae


Domain annotation for each model (and alignments):
>> TIGR03677  rpl7ae: 50S ribosomal protein L7Ae
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.1   7.7e-24   3.2e-20      11     103 ..      54     146 ..      44     161 .. 0.92

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 7.7e-24
   TIGR03677  11 adkaleavekaretGkikkGtnevtkaverGiaklvviaedvePeeivahlpalceekkipyvyvkkkedlGkaaGlevsaaavaivdeGkae 103
                 ++ka ++v+ka  + +i++G  ev+k + +G+  l v+a d+ P ++  +lp+l eek++py++v +k+dlG+aa  + +++ v + d+ +++
  MMETSP1061-20121228|7013_1  54 TKKAHKLVKKAAGAKRIRRGVKEVVKGLRKGEGGLCVLAGDIYPLDVYSFLPVLLEEKNVPYIFVPSKQDLGAAACTKRPTSVVLVKDKADKK 146
                 68999***********************************************************************99998888777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1093.62
//
Query:       MMETSP1061-20121228|7014_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-57  192.3   0.2    2.9e-57  191.9   0.2    1.1  1  TIGR00419 tim: triose-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.9   0.2   7.1e-61   2.9e-57       1     228 []      74     325 ..      74     325 .. 0.90

  Alignments for each domain:
  == domain 1    score: 191.9 bits;  conditional E-value: 7.1e-61
   TIGR00419   1 lviinfKlnesvgkve.levaklaeev....aseagvevavappfvdldvvkdeve.seiqvaAqnvdavksGaftGeisAemlkdlGakgvligHsErRsllkeadeliekkva.rlkelglksvvCvgetleere................aartinnvattaaaaAlepdvvAvEPveliGtGkpvskAeaevveksvrdhlkk.vskevaesvrvlyGasvtaaedaelaaqldvdGvLlasavlkae 228
                 +v +n+Kln s+ + + +++  la +      + +  ev v pp+ +l++++  +e + i+v+Aqnv a ++GaftGe+s  m++ lG+ +v++gHsErR+l  e+de+i++k+   l+e glk ++Cvgetlee e                 + +++ +  + + +     vvA+EPv++iGtGk++++ +a+v +  vr  l++    evae+++++yG+svt  +  +l+  +dvdG+L+++a+l a+
  MMETSP1061-20121228|7014_1  74 VVAGNWKLNPSTIQEAsTLLKLLASNFihhrNGDTTPEVIVFPPHPYLERAVCLLEgTGIKVGAQNVGAETKGAFTGEVSPSMVRSLGCDYVMVGHSERRTLYSESDEVINAKIKlSLQESGLKIILCVGETLEEYEnnllssvvnfqirkalDGVRMEDIVSSISLVDSVRLVVAYEPVWAIGTGKVATPTQAQVAHVAVRKTLAElYGLEVAEKIQIQYGGSVTPDSISDLISMPDVDGALVGGASLAAD 325
                 699****9988766651455555555411114456789******************999*******************************************************845899****************999*******998887777888888888888889999*********************************98889**************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1902.84
//
Query:       MMETSP1061-20121228|7016_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 468.56
//
Query:       MMETSP1061-20121228|7015_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 785.34
//
Query:       MMETSP1061-20121228|7022_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 503.96
//
Query:       MMETSP1061-20121228|7020_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       355  (0.0865431); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1326.18
//
Query:       MMETSP1061-20121228|7026_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-31  106.3   6.8    1.3e-18   65.5   1.2    3.1  2  TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family
  ------ inclusion threshold ------
       0.83    6.1  12.2        1.2    5.5   8.4    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01033  TIGR01033: DNA-binding regulatory protein, YebC/PmpR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   1.2   6.3e-22   1.3e-18       1      81 [.      21     100 ..      21     104 .. 0.95
   2 !   38.7   0.2   9.8e-14     2e-10      95     148 ..     146     199 ..     142     254 .. 0.77

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 6.3e-22
   TIGR01033   1 maGhskwanikhrkekqdakkgkiftklikeiivAakeGggdpesNprLrtaiekAkaanlpkdnieraikkgageadeen 81 
                 maGh+kw++i+h+k+++d kk+ ++ k +k+i+vA +   gd  s +rL+ta+++Ak+  lp+d+ie ai+kg+g +++++
  MMETSP1061-20121228|7026_1  21 MAGHNKWSKIRHKKGANDRKKATVLGKASKAITVASRDCKGD-RSDFRLQTAVQHAKSVQLPRDRIEEAIEKGTGRSSGSD 100
                 9****************************************9.579*****************************887776 PP

  == domain 2    score: 38.7 bits;  conditional E-value: 9.8e-14
   TIGR01033  95 vavlvealtDNknRtaselrsalnkkggsLgesgsvsylFsrkgvievekeeie 148
                 va +v al+DN+nRt++ +r++++k gg++  +  ++ylF++ g + ve ++ +
  MMETSP1061-20121228|7026_1 146 VACVVTALSDNRNRTTQHVRHLVTKFGGEFLPTDHLNYLFDHVGHVLVELDDNY 199
                 899*****************************************9999877633 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   8.4   0.00058       1.2     202     280 ..     194     271 ..     188     295 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00058
   TIGR01651 202 elgddeesedeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaetpgea 280
                 el d+ +++ +++++dd+  +d+++++ ++ e+ +ea      ea + + e ++e   + d+ddl+ + de  e  ge 
  MMETSP1061-20121228|7026_1 194 ELDDNYNKDGDSNNNDDDNDDDDDDDNNDDLEALEEALMECALEAGATNIEPADEYEYDNDEDDLDLDIDEPCE-SGEI 271
                 5667766666777777777888888999999999999999999***********************99999999.7775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.20
# Mc/sec: 2072.23
//
Query:       MMETSP1061-20121228|7019_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 809.93
//
Query:       MMETSP1061-20121228|7021_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 2121.48
//
Query:       MMETSP1061-20121228|7028_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 229.76
//
Query:       MMETSP1061-20121228|7025_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 892.66
//
Query:       MMETSP1061-20121228|7030_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1343.89
//
Query:       MMETSP1061-20121228|7027_1  [L=1342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    3.7 111.1     0.0068   12.0  30.8    2.3  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  30.8   1.7e-06    0.0068     249     509 ..      61     315 ..      52     325 .. 0.82
   2 ?   -3.3  41.1     0.068   2.8e+02     196     488 ..     325     619 ..     321     622 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.7e-06
   TIGR02168 249 keaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeele.eleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglseg 509
                 ++++e++++ e+++++ +e+  ++r+++ e+ e++e+l+++++   a i+++eq +++++e  +++e+   e+e   e++++k++el++  ++ e+++++l  ++++l+ e e+a+ae e+ ++++++l+    ++++++   +++++++++ + ++ ++  ++ + ++r+++ ie+++kk  ++ +e++elqe+++el +e + + + +++++ + ++el++e+ + + ++++a ++ + +q r+  le+l+e+ +  +++
  MMETSP1061-20121228|7027_1  61 NSNREKEKDNENRVAQNHEQNPTTRDRDPED-EAYETLRSKYD---ASIAEVEQWKRRHEEVTRSSESRVIEMECLFEQAKAKQTELRKLESAYEDKTNTLGDQIQKLQFECERAKAETEDWKKQYDKLR---SDAEEKFITSSKEIEKTRKAFAEAVRKTREMVDAKNRFSKGIEDEQKKTLKLFQEAHELQEKIQELTAEYTaKSTLQQDNILQLEKELQNEILKHQGEMTAATKQKRVYQIRIGQLEELLEKSNVDNND 315
                 5566677777777777777777777776664.45666666655...6677788888888888888889999999999*************************************8777777776666665...556789999********************************************************9888651566788888999999********************************9987654443 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.068
   TIGR02168 196 kElerq.lksLerQaekAekykelkeelr.elelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqe.....lkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeele.sleaeleeaeaeleelesrleeleeeleelrsevaeleeql.aslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaq 488
                  E++r+  ++Le+ +++A    +++++l+ e +la  +++l++++++++e    + ++e e ++l+a++++ + ++ + ++++s++ ++le+++++++e     +++e+++ ++  +++ + +++l+ e   ++e ++++e+++++ ee l++++eel++++ + + +++ e++++++ l++++++++ lee+++e++++ ++l+ ++ ++++ ele++++   ++++  +  +++ + +       +a +  lq+el+e+ +e  +l+e+++++  + ++ ++ +ee+++++ +++ ++++
  MMETSP1061-20121228|7027_1 325 DEIRRKhKEELEKAKSTAAAAARYQSDLKwEERLAKEAKDLDAANQKWKEEMLGKHNEEVEKAKLAAAAAARKDAYLRWEDRFSNKTRDLEAANQKWKEgilqaHREELQETKTAAAHAARTESDLKWEDRLANEARDRDEADQKRREEVLQAQKEELKNAQSKAAaAAAGEIDTLKNSLKQFQQEVQILEEQAREQSKAEQNLRDEMlRKHELELEEARSLSLSSSSAAD-VSSRATPK------RRAFAIGLQQELDEKTKECVKLQENFNKIAMQNSKHSDTIEELREEIVELKIRFQR 619
                 5665541456887777777777777777634556777999999999999999999999999999999999999999999*****999999999988754221116777777777777777888888888888888888888888888888888888888886665514556888888888888888888888888887777666655414445555555444433333322.22222222......24445689999999999999999999999999999999999999999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       559  (0.136275); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.08u 0.16s 00:00:01.24 Elapsed: 00:00:01.00
# Mc/sec: 1771.29
//
Query:       MMETSP1061-20121228|7032_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.21
# Mc/sec: 2451.23
//
Query:       MMETSP1061-20121228|7035_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-22   75.9   0.0    6.4e-20   69.5   0.0    2.1  2  TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family
    2.4e-18   64.4   0.1    5.2e-18   63.3   0.0    1.5  1  TIGR01887 dipeptidaselike: putative dipeptidase
    4.5e-17   59.9   0.0    3.8e-11   40.4   0.0    2.2  2  TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase
    1.8e-16   58.0   0.0    5.1e-14   49.9   0.0    2.1  2  TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE)
    5.5e-16   56.3   0.1    9.4e-16   55.5   0.1    1.3  1  TIGR01886 dipeptidase: dipeptidase PepV
    1.1e-09   35.3   0.0    2.6e-07   27.5   0.0    2.2  2  TIGR01880 Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase
    2.6e-05   21.1   0.0       0.02   11.6   0.0    2.8  2  TIGR01900 dapE-gram_pos: succinyl-diaminopimelate desuccinylase
    3.8e-05   20.5   0.1    0.00029   17.6   0.0    2.0  2  TIGR03526 selenium_YgeY: putative selenium metabolism hydrolase
      7e-05   20.0   0.0     0.0013   15.9   0.0    2.3  2  TIGR01902 dapE-lys-deAc: N-acetyl-ornithine/N-acetyl-lysine deacetylase


Domain annotation for each model (and alignments):
>> TIGR01910  DapE-ArgE: peptidase, ArgE/DapE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   1.4e-22   6.4e-20       5     155 ..      23     180 ..      19     254 .. 0.78
   2 !    4.6   0.0    0.0075       3.4     242     373 .]     332     468 ..     299     468 .. 0.69

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 1.4e-22
   TIGR01910   5 kdlisipsv.nppaeneeeia...nyikdlLrelgfevdvieiekdrlkklsr.ivvketgngr..eksLilngHiDVVpaGdvekWktdPFkpvekdgklyGRGatDmKgglvallyAlkalreaglklegdiilqavvdEEsgeaGtlsllqkgyr 155
                 ++ ++ipsv +   ++  +i+   ++   ++++lg +v  +      +++    i++ e ++++  +k++ + gH+DV pa   + W+tdPF ++ekdgkl+GRG+tD Kg   + l  +   ++ g++l+ +i++++   EEsg  G+ +l+q   +
  MMETSP1061-20121228|7035_1  23 AKAVAIPSVsAELDHHLDDIVemmEWTGAYIEKLGGSVTMVANPVATPESPLPpILLGEFKTNDpsKKTVCVYGHLDVQPAAIEDGWDTDPFVLTEKDGKLFGRGSTDDKGPALSWLWIIYLHQKMGVELPVNIKILFEGMEESGSSGIFELIQAEGK 180
                 56667777643333334444411145567788888888777777777664332566666665543389**************9**********************************************************************98766 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0075
   TIGR01910 242 dkvnsvpdraelevrvriiPeenkeevkkeveslvkalsksdevlaeleveveisg.pletpddselvkaleavikkvk.geeakv...lvssgvtDarflrkag...ipvivyGPgeletaHqvnEyisieelvesikv 373
                     ++p ++  ++  r++P+ + +e +k v+  +++  ++ +   ++e+e++  + +  + + ++  +a   +i+ v+ g+++      +s  +t a  l++a    +  +  G+  +  aH+ nE+ ++ +l++ +kv
  MMETSP1061-20121228|7035_1 332 GAKTVIPKKVIGKFSLRLVPDQDPKEIEKLVRIHLENEFEKLKSPNKMEIELNHGAhAWLSNPKHPNFEAAARAIEIVYhGVKPDYtreGGSIPITSA--LENATgmnVLLLPVGAC-DDGAHSQNEKYNVVNLLNGVKV 468
                 45678999999999************999999999888777778888888888887744455555544444444444331344433000333333333..33333323555556777.7889*********999998887 PP

>> TIGR01887  dipeptidaselike: putative dipeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   1.1e-20   5.2e-18      66     158 ..      88     182 ..      78     196 .. 0.88

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 1.1e-20
   TIGR01887  66 geellgilgHlDVVPeG..dgWtsppfeaeikdgkiygRGvlDdKGPtlaalyalkilkelglklkkkirlilGtdEEsgskcidyYfekeeapt 158
                  ++++ + gHlDV P+   dgW+++pf  + kdgk++gRG++DdKGP+l  l+ + + + +g++l   i++++   EEsgs+ i   ++ e  p 
  MMETSP1061-20121228|7035_1  88 SKKTVCVYGHLDVQPAAieDGWDTDPFVLTEKDGKLFGRGSTDDKGPALSWLWIIYLHQKMGVELPVNIKILFEGMEESGSSGIFELIQAEGKPG 182
                 57899**********96558**************************************************************9987777777664 PP

>> TIGR01246  dapE_proteo: succinyl-diaminopimelate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   8.3e-14   3.8e-11      51     100 ..      85     134 ..      78     183 .. 0.86
   2 !   17.4   0.0   8.3e-07   0.00038     235     364 ..     329     470 ..     313     476 .. 0.83

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 8.3e-14
   TIGR01246  51 rgteepvlvfaGhtDvvPaGelekWssdpfepeerdGklygrGaaDmkgs 100
                 +  +++++++ Gh Dv Pa  ++ W++dpf  +e+dGkl+grG++D kg 
  MMETSP1061-20121228|7035_1  85 NDPSKKTVCVYGHLDVQPAAIEDGWDTDPFVLTEKDGKLFGRGSTDDKGP 134
                 5557889****************************************996 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 8.3e-07
   TIGR01246 235 agtgasnviPgelkvkfnlrfssevseeelkskvekildkh......kldYelewklsgepfltk.egklikkvaeaieevlk.kkpelstsGG....tsDarfiaklgaevvelGlvndtihkvneavkiedleklsevye 364
                 +g+ga  viP ++  kf lr  +++  +e+++ v+  l+++        + e+e++  ++++l + +    +++a aie v +  kp+ + +GG    ts       + + ++ +G ++d +h  ne+ ++ +l +  +v  
  MMETSP1061-20121228|7035_1 329 SGKGAKTVIPKKVIGKFSLRLVPDQDPKEIEKLVRIHLENEfeklksPNKMEIELNHGAHAWLSNpKHPNFEAAARAIEIVYHgVKPDYTREGGsipiTSALENATGMNVLLLPVGACDDGAHSQNEKYNVVNLLNGVKVLG 470
                 699*****************************999888877675544446899************8888999*******997636888888999676677777888888889999*************99988876666655 PP

>> TIGR01892  AcOrn-deacetyl: acetylornithine deacetylase (ArgE)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.9   0.0   1.1e-16   5.1e-14       3     144 ..      22     177 ..      20     183 .. 0.79
   2 !    6.1   0.0    0.0023         1     229     297 ..     326     395 ..     293     468 .. 0.76

  Alignments for each domain:
  == domain 1    score: 49.9 bits;  conditional E-value: 1.1e-16
   TIGR01892   3 lakLvafdsvsar......snvdlieyvedyleelgvavevlpvadgaeksnl....la.viGpkegagglvlsGhtDvvPvd.eaaWtsDpfrLtekdgrLYgrGtaDmkGFlalvLaavpdlaaakLkkPl..hlvlsaDeevglaGakkliea 144
                 lak va++svsa         v+++e+  +y+e+lg +v  + ++  +  s l    l   +     ++++ + Gh Dv P++ e +W +Dpf Ltekdg+L+grG++D kG     L  +   +++ +  P+   +++   ee g  G+ +li+a
  MMETSP1061-20121228|7035_1  22 LAKAVAIPSVSAEldhhldDIVEMMEWTGAYIEKLGGSVTMVANPVATPESPLppilLGeFKTNDPSKKTVCVYGHLDVQPAAiEDGWDTDPFVLTEKDGKLFGRGSTDDKGPALSWLWIIYLHQKMGVELPVniKILFEGMEESGSSGIFELIQA 177
                 7899*******99888887778999**************9999988876665521113312333355799***********986899*************************87777777755566666666511567777899999999998876 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0023
   TIGR01892 229 GtvkGGkavniiaaaCelvlelRpipGmdpeellallekiaee.vkekapgfevkveelsatpaleleed 297
                 G   G  a+ +i+++   ++ lR +p +dp+e+ +l++  +e+  ++ +   ++++e+ +   a+  ++ 
  MMETSP1061-20121228|7035_1 326 GAFSGKGAKTVIPKKVIGKFSLRLVPDQDPKEIEKLVRIHLENeFEKLKSPNKMEIELNHGAHAWLSNPK 395
                 5666778*****************************9987775333333344556666555555555554 PP

>> TIGR01886  dipeptidase: dipeptidase PepV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.1   2.1e-18   9.4e-16      78     169 ..      89     182 ..      78     197 .. 0.85

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 2.1e-18
   TIGR01886  78 devlGiiGhldvvpaG..eGwesdpfepeikeGkiyarGasddkGpslaayyalkilkelglklskkirfvvGtneetgwadldyylkheeapd 169
                 ++++ ++Ghldv pa   +Gw++dpf    k+Gk+++rG++ddkGp+l+  + + + +++g++l   i+ +    ee+g +++   ++ e  p 
  MMETSP1061-20121228|7035_1  89 KKTVCVYGHLDVQPAAieDGWDTDPFVLTEKDGKLFGRGSTDDKGPALSWLWIIYLHQKMGVELPVNIKILFEGMEESGSSGIFELIQAEGKPG 182
                 48999*********96559**********************************************9***9*9*******999988888777775 PP

>> TIGR01880  Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   5.6e-10   2.6e-07      59     156 ..      76     172 ..      58     180 .. 0.87
   2 !    5.5   0.0    0.0026       1.2     261     308 ..     333     380 ..     315     420 .. 0.72

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 5.6e-10
   TIGR01880  59 vvvlltwkGsnPelpsillnshldvvPvf.kekWthdPfsafkdeeGeiyarGaqdmkcvgvqyleavrklkasGakfkrtihlsfvpdeeigGidGme 156
                 +++l  +k  +P   ++ ++ hldv P+  ++ W  dPf    +++G+++ rG+ d+k  ++  l  +   ++ G +    i + f   ee  G +G+ 
  MMETSP1061-20121228|7035_1  76 PILLGEFKTNDPSKKTVCVYGHLDVQPAAiEDGWDTDPFV-LTEKDGKLFGRGSTDDKGPALSWLWIIYLHQKMGVELPVNIKILFEGMEES-GSSGIF 172
                 6777789999*****************862667******7.5789*****************************************999995.555655 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0026
   TIGR01880 261 qsnviPseleagfdirlapsvdfealekrlaeevadagegvtlefkqk 308
                 +  viP+++   f +rl p+ d++++ek ++ ++++  e ++   k +
  MMETSP1061-20121228|7035_1 333 AKTVIPKKVIGKFSLRLVPDQDPKEIEKLVRIHLENEFEKLKSPNKME 380
                 4579**********************9977766666655555444444 PP

>> TIGR01900  dapE-gram_pos: succinyl-diaminopimelate desuccinylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   4.5e-05      0.02      55      98 ..      87     137 ..      15     178 .. 0.73
   2 !    6.4   0.0    0.0017      0.77     224     286 ..     329     396 ..     320     474 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.5e-05
   TIGR01900  55 grpsrvilaGHlDTVpva.....dnlpsrv..edevlygrGavDmKagvAv 98 
                   +++v++ GHlD  p a     d+ p  +  +d++l+grG++D K+    
  MMETSP1061-20121228|7035_1  87 PSKKTVCVYGHLDVQPAAiedgwDTDPFVLteKDGKLFGRGSTDDKGPALS 137
                 3456788*********998777644444336699***********986544 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0017
   TIGR01900 224 eggvakNviPdeaevnvnyRfAPdrsleqakaevrevle........gaevelevtdlspaarpgleapla 286
                 +g  ak viP ++  + + R  Pd++ ++ ++ vr  le          ++e+e++     a++ l++p  
  MMETSP1061-20121228|7035_1 329 SGKGAKTVIPKKVIGKFSLRLVPDQDPKEIEKLVRIHLEnefeklksPNKMEIELNHG---AHAWLSNPKH 396
                 5678999***********************9999876632233332222333344443...3333333333 PP

>> TIGR03526  selenium_YgeY: putative selenium metabolism hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.11        50       8      45 ..      11      48 ..       5      59 .. 0.87
   2 !   17.6   0.0   6.4e-07   0.00029      67     120 ..      89     142 ..      81     173 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.11
   TIGR03526  8 aekykedivkflrdlvkipsesadekrvierikeemek 45
                ++++k+ +++ l + v+ips sa+ ++ +  i e me 
  MMETSP1061-20121228|7035_1 11 VDEHKTMMIDELAKAVAIPSVSAELDHHLDDIVEMMEW 48
                567888999999****************9999999985 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 6.4e-07
   TIGR03526  67 eklialdahidtvgigdekqwkfdPyeGaedeeiiyGrGasdqegsiasmvyag 120
                 +k +++ +h+d+   + e+ w+ dP+  +e++ +++GrG++d++g   s ++  
  MMETSP1061-20121228|7035_1  89 KKTVCVYGHLDVQPAAIEDGWDTDPFVLTEKDGKLFGRGSTDDKGPALSWLWII 142
                 7899****************************************9988877655 PP

>> TIGR01902  dapE-lys-deAc: N-acetyl-ornithine/N-acetyl-lysine deacetylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.8e-06    0.0013      72     123 ..     120     171 ..      84     182 .. 0.72
   2 ?    1.4   0.0     0.071        32     228     337 ..     363     476 ..     353     478 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.8e-06
   TIGR01902  72 gellyGRGavDAKgPlvallfalal...lkvkvekdikvivvGlveEEsssskGA 123
                  ++l+GRG+ D KgP  + l ++ l   + v+ + +ik+ + G+  EEs  s G 
  MMETSP1061-20121228|7035_1 120 DGKLFGRGSTDDKGPALSWLWIIYLhqkMGVELPVNIKILFEGM--EES-GSSGI 171
                 579************99988877631114456666777777775..666.45565 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.071
   TIGR01902 228 kskreeaikeltdkktisLeildetpavkvkrsnplvrafvralrkvg..ikPklvkKtGtsDm.niLaprwtvdivaYGPGds.tLdHtpqEkvslaeylkgievlkealeel 337
                 + + e+   +l +++++++e+ +   a  ++ + p  +a +ra+  v   +kP +    G   +   L + +++++     G      H   Ek ++ ++l g++vl   l+el
  MMETSP1061-20121228|7035_1 363 RIHLENEFEKLKSPNKMEIELNHGAHAWLSNPKHPNFEAAARAIEIVYhgVKPDYTREGGSIPItSALENATGMNVLLLPVGACdDGAHSQNEKYNVVNLLNGVKVLGTYLHEL 476
                 5555555666666667777777778888888888888888888876533489999998887765246777777776655444431246999***************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 2184.21
//
Query:       MMETSP1061-20121228|7037_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 439.96
//
Query:       MMETSP1061-20121228|7038_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 851.33
//
Query:       MMETSP1061-20121228|7033_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1731.09
//
Query:       MMETSP1061-20121228|7036_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 643.45
//
Query:       MMETSP1061-20121228|7040_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          5    4.9  22.1        5.2    4.9  15.3    1.0  1  TIGR02205 septum_zipA: cell division protein ZipA
        9.2    4.0  20.8         10    3.8  14.4    1.1  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  15.3    0.0025       5.2      67     160 ..       7     103 ..       1     107 [] 0.35

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0025
   TIGR02205  67 veheipqpseqkepsiseavdkerkksvedeeasvpaqpvqqqldlpqaekvaqqtvepreaks..........lavasaeeeevekalevaakpkekdkviil 160
                   +++ +p++ k+ + +++ + ++k+++++++  +p qp++q       ++ +q++ +++ ++           ++++++ +++  k+  +++++  +++++++
  MMETSP1061-20121228|7040_1   7 ERTKEREPKQSKQMQQPKKPNGPKKPKQKPQPQPQP-QPMKQ------MKQMKQMQKMQQMQQQmqqkmkpkenQPKKKRMKRKQIKPRSTMNRTTGVQELLVI 103
                 333333444444444444433333333333333333.33333......33333322222222221111111112234444444444444555555555555555 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8  14.4     0.005        10      66     144 ..       5      81 ..       1     101 [. 0.37

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.005
   TIGR03499  66 akkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae...eelrkelkalkellekqlselaleeedperakll 144
                 ++++++e+epk++++ +++++ + +++ k++++ q ++++++  +    + +++++++++++++++++   +e++p+++++ 
  MMETSP1061-20121228|7040_1   5 KRERTKEREPKQSKQMQQPKKPNGPKKPKQKPQPQPQPQPMK--QmkqMKQMQKMQQMQQQMQQKMKP---KENQPKKKRMK 81 
                 222222222322222222222222222222222222222222..211233334444444444444443...34444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       737  (0.179668); expected 82.0 (0.02)
Passed bias filter:                      339  (0.0826426); expected 82.0 (0.02)
Passed Vit filter:                        49  (0.0119454); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 427.96
//
Query:       MMETSP1061-20121228|7042_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-62  202.6  27.3    0.00036   18.1   0.0   18.2 18  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.2   0.0    0.0082        33      12      26 .]      10      24 ..       3      24 .. 0.83
   2 !   13.7   0.2   2.1e-06    0.0085       1      25 [.      25      48 ..      25      49 .. 0.96
   3 !   11.8   0.0   8.2e-06     0.034       1      25 [.      50      73 ..      50      74 .. 0.95
   4 !    8.6   0.0   8.3e-05      0.34       2      24 ..      76      97 ..      75      99 .. 0.88
   5 !    4.4   0.0    0.0016       6.7       2      24 ..     101     122 ..     101     124 .. 0.87
   6 !   14.7   0.0     1e-06    0.0041       1      24 [.     125     147 ..     125     149 .. 0.96
   7 !   17.0   0.0   1.9e-07   0.00079       2      25 ..     151     173 ..     150     174 .. 0.90
   8 !   14.9   0.2   8.6e-07    0.0035       1      25 [.     175     198 ..     175     199 .. 0.97
   9 !    9.9   0.0   3.2e-05      0.13       1      21 [.     200     219 ..     200     223 .. 0.98
  10 !   13.1   0.4   3.2e-06     0.013       1      24 [.     225     247 ..     225     249 .. 0.96
  11 !   18.1   0.0   8.7e-08   0.00036       1      25 [.     250     273 ..     250     274 .. 0.97
  12 !   14.7   0.0   9.9e-07     0.004       1      23 [.     275     296 ..     275     299 .. 0.95
  13 !    7.3   0.0   0.00021      0.87       1      24 [.     300     322 ..     300     324 .. 0.91
  14 !    4.4   0.0    0.0017       7.1       2      25 ..     326     348 ..     326     349 .. 0.83
  15 !    7.3   0.0   0.00021      0.87      12      25 ..     360     373 ..     356     374 .. 0.84
  16 !   15.5   0.0   5.6e-07    0.0023       1      25 [.     375     398 ..     375     399 .. 0.96
  17 !   15.4   0.0   5.8e-07    0.0024       1      26 []     400     424 ..     400     424 .. 0.97
  18 !    9.2   0.2   5.2e-05      0.22       1      25 [.     425     448 ..     425     449 .. 0.98

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0082
   TIGR02167 12 DlSnfdTsnVTnMss 26
                +l ++d+s V  M +
  MMETSP1061-20121228|7042_1 10 PLNGWDVSGVSHMGN 24
                7899******99975 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 2.1e-06
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                MF+g s++++ ++S ++ s+V +M 
  MMETSP1061-20121228|7042_1 25 MFNGASAFNQ-PISDWNMSQVYDMG 48
                **********.**********9997 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 8.2e-06
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                MF g  ++++ +l+ +d+s+ T M+
  MMETSP1061-20121228|7042_1 50 MFDGAYAFNQ-PLDEWDVSQATYMR 73
                9*********.*************7 PP

  == domain 4    score: 8.6 bits;  conditional E-value: 8.3e-05
   TIGR02167  2 FsgCssLtsLDlSnfdTsnVTnM 24
                F+  +s+++ +++++++s+V  M
  MMETSP1061-20121228|7042_1 76 FFAAKSFNQ-PIEKWNVSEVYSM 97
                99999****.*********9666 PP

  == domain 5    score: 4.4 bits;  conditional E-value: 0.0016
   TIGR02167   2 FsgCssLtsLDlSnfdTsnVTnM 24 
                 F+g s++++ ++  +++s+  +M
  MMETSP1061-20121228|7042_1 101 FYGASAFNQ-PINRWNVSQLEDM 122
                 9********.********85555 PP

  == domain 6    score: 14.7 bits;  conditional E-value: 1e-06
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnM 24 
                 MF g  ++++ +l  +d+snV++M
  MMETSP1061-20121228|7042_1 125 MFHGAYAFNQ-PLNEWDVSNVNDM 147
                 9*********.************* PP

  == domain 7    score: 17.0 bits;  conditional E-value: 1.9e-07
   TIGR02167   2 FsgCssLtsLDlSnfdTsnVTnMs 25 
                 F g s++++  ++ +d+snVT+M+
  MMETSP1061-20121228|7042_1 151 FHGASAFNQ-LIDEWDVSNVTDMD 173
                 899999999.8************7 PP

  == domain 8    score: 14.9 bits;  conditional E-value: 8.6e-07
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF+g s++++ +l  +++s+V +M+
  MMETSP1061-20121228|7042_1 175 MFNGASAFNQ-PLNEWNVSQVSTMD 198
                 **********.*************7 PP

  == domain 9    score: 9.9 bits;  conditional E-value: 3.2e-05
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnV 21 
                 MF+g s++++ +l  +++s+V
  MMETSP1061-20121228|7042_1 200 MFYGASAFNQ-PLNEWNVSQV 219
                 **********.*********9 PP

  == domain 10    score: 13.1 bits;  conditional E-value: 3.2e-06
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnM 24 
                 MF+g s++++  +S +d+s+ ++M
  MMETSP1061-20121228|7042_1 225 MFNGASAFNQ-SISDWDVSKINDM 247
                 9*********.************* PP

  == domain 11    score: 18.1 bits;  conditional E-value: 8.7e-08
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF+g s+++  ++  +d+s+VT+M 
  MMETSP1061-20121228|7042_1 250 MFNGASAFNH-PINEWDVSQVTDMG 273
                 9*********.*************6 PP

  == domain 12    score: 14.7 bits;  conditional E-value: 9.9e-07
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTn 23 
                 MFsg s++++ ++  +d+s+ T+
  MMETSP1061-20121228|7042_1 275 MFSGASAFNQ-PINDWDVSQATD 296
                 **********.***********9 PP

  == domain 13    score: 7.3 bits;  conditional E-value: 0.00021
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnM 24 
                 MF++ s++++ +l  ++ s+V  M
  MMETSP1061-20121228|7042_1 300 MFYDASAFNQ-PLNEWNISKVHKM 322
                 **********.*********9555 PP

  == domain 14    score: 4.4 bits;  conditional E-value: 0.0017
   TIGR02167   2 FsgCssLtsLDlSnfdTsnVTnMs 25 
                 F g  ++++ +l++++ s V++M 
  MMETSP1061-20121228|7042_1 326 FDGAYAFNQ-PLTGWNISGVNDMG 348
                 566677778.99***********7 PP

  == domain 15    score: 7.3 bits;  conditional E-value: 0.00021
   TIGR02167  12 DlSnfdTsnVTnMs 25 
                  +S++++s+V  M+
  MMETSP1061-20121228|7042_1 360 TISGWNVSQVHYMY 373
                 69********8885 PP

  == domain 16    score: 15.5 bits;  conditional E-value: 5.6e-07
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF g ss+++ +++++d+s V nM+
  MMETSP1061-20121228|7042_1 375 MFDGASSFNQ-PIDKWDVSTVHNMR 398
                 9*********.*************7 PP

  == domain 17    score: 15.4 bits;  conditional E-value: 5.8e-07
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMss 26 
                 MF g s++++ ++  +d+s V +M++
  MMETSP1061-20121228|7042_1 400 MFHGASAFNQ-PINEWDVSRVIDMNG 424
                 9*********.*************85 PP

  == domain 18    score: 9.2 bits;  conditional E-value: 5.2e-05
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MFsg s +++  +  + +s V +Ms
  MMETSP1061-20121228|7042_1 425 MFSGASVFNQ-TINEWEVSRVRDMS 448
                 9*********.*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 3096.67
//
Query:       MMETSP1061-20121228|7039_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-28   94.1   0.0    1.3e-27   93.7   0.0    1.2  1  TIGR01068 thioredoxin: thioredoxin
    4.6e-15   53.7   0.0    5.8e-15   53.3   0.0    1.2  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
      7e-13   46.7   0.0    8.4e-13   46.5   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    2.4e-05   21.8   0.0    0.00023   18.6   0.0    2.0  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
    0.00016   19.6   0.0    0.00031   18.6   0.0    1.5  1  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
     0.0017   16.0   0.0     0.0024   15.5   0.0    1.2  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
  ------ inclusion threshold ------
      0.023   11.1   0.0      0.027   10.9   0.0    1.1  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.0   2.3e-30   1.3e-27      14     100 ..      90     174 ..      76     175 .] 0.91

  Alignments for each domain:
  == domain 1    score: 93.7 bits;  conditional E-value: 2.3e-30
   TIGR01068  14 dklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeliekl 100
                  +lv+vDf A+WCgpC+m+aP+ +e+++ +  +v ++K++vde+ ++a++y+++++Pt l++k g + +rv+Ga+  ++lk++ie++
  MMETSP1061-20121228|7039_1  90 GQLVVVDFTATWCGPCQMIAPLYKEMSETYD-DVVFLKVDVDENADTAQHYSVSAMPTFLFIKGGVVLERVMGANA-QRLKDAIEQH 174
                 469************************6665.8*****************************************98.8899999987 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   0.0   9.9e-18   5.8e-15      13      83 ..      89     155 ..      76     175 .] 0.83

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 9.9e-18
   TIGR01126  13 enkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkk 83 
                 + + v+v+f+a WCG C+ +aP y++++++++    +v+  kvd +++ ++a++++vs+ Pt  f+k g  
  MMETSP1061-20121228|7039_1  89 AGQLVVVDFTATWCGPCQMIAPLYKEMSETYD----DVVFLKVDVDENADTAQHYSVSAMPTFLFIKGGVV 155
                 56789************************998....5999*************************998864 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   1.4e-15   8.4e-13      19     100 ..      91     171 ..      85     175 .] 0.78

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 1.4e-15
   TIGR01130  19 elvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrnge...sssdYnGpReaegi 100
                 +lv+v F A WCG C+ +aP Y++     +++  +v+  kvD  e+++ aq+y+vs  Pt  +++ g    ++   n +R +++i
  MMETSP1061-20121228|7039_1  91 QLVVVDFTATWCGPCQMIAPLYKEM----SETYDDVVFLKVDVDENADTAQHYSVSAMPTFLFIKGGVvleRVMGANAQRLKDAI 171
                 7899999999999999999999865....55555799999999999999999999999999999988743333444445666666 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   3.9e-07   0.00023      58     103 ..      85     132 ..      40     139 .. 0.69
   2 ?    2.7   0.0     0.032        19     121     160 ..     127     165 ..     124     173 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.9e-07
   TIGR00385  58 evlkkgklvLlnvwasWCptCraehplLkelakeg..lrivgvdykDe 103
                  +   g+lv++++ a+WC++C+   pl ke++++   +  + vd  ++
  MMETSP1061-20121228|7039_1  85 RAGSAGQLVVVDFTATWCGPCQMIAPLYKEMSETYddVVFLKVDVDEN 132
                 4556799************************99862244445555554 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.032
   TIGR00385 121 vlaDekGklaldlGvygaPetflvdgnGviryrhaGdlnk 160
                 v  De+   a  + v ++P tfl  + Gv++ r  G   +
  MMETSP1061-20121228|7039_1 127 VDVDENADTAQHYSVSAMP-TFLFIKGGVVLERVMGANAQ 165
                 5579999999999999999.89999999*99999997654 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   5.3e-07   0.00031       6      80 ..      97     173 ..      93     175 .] 0.76

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 5.3e-07
   TIGR00411   6 ftsPtCPyCPkakkvveevakeegdkvevekinvmedlkkaleyGimavPa.ivingkv...efvGaPdkeeLveaikk 80 
                 ft+  C  C +     +e+  e+ d v  +k++v+e+ + a +y + a+P+ + i g v   +++Ga   + L +ai++
  MMETSP1061-20121228|7039_1  97 FTATWCGPCQMIAPLYKEMS-ETYDDVVFLKVDVDENADTAQHYSVSAMPTfLFIKGGVvleRVMGAN-AQRLKDAIEQ 173
                 89999999999888887765.67788889*********************944687766233456654.4567777765 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.1e-06    0.0024      28      87 ..      96     153 ..      86     164 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.1e-06
   TIGR02187  28 deskekCeyCeetkqlleelsevsdklkleiydldteedkekvekykvervPtvileeeg 87 
                 d + + C  C+ +  l +e+se  d + +  +d+d  e+ +++++y v ++Pt  + + g
  MMETSP1061-20121228|7039_1  96 DFTATWCGPCQMIAPLYKEMSETYDDVVFLKVDVD--ENADTAQHYSVSAMPTFLFIKGG 153
                 445678****************9987766555666..77888***********9999855 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   4.7e-05     0.027     376     436 ..      94     150 ..      57     155 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.7e-05
   TIGR00424 376 lvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillf 436
                 +v + a wc  cq +   y+e++e      + v  ++ d d+++ + q   ++++pt l++
  MMETSP1061-20121228|7039_1  94 VVDFTATWCGPCQMIAPLYKEMSETY----DDVVFLKVDVDENADTAQHYSVSAMPTFLFI 150
                 3335799**************99865....789999*********************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1099.91
//
Query:       MMETSP1061-20121228|7044_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-20   71.5   0.0    1.9e-20   71.0   0.0    1.2  1  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    7.4e-18   62.4   0.0    9.8e-18   62.0   0.0    1.1  1  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    9.4e-15   51.7   0.0    1.2e-14   51.3   0.0    1.1  1  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    1.8e-14   50.9   0.0    2.3e-14   50.6   0.0    1.1  1  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    1.3e-12   44.6   0.0    1.6e-12   44.3   0.0    1.0  1  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    5.1e-12   43.1   0.0    5.9e-12   42.9   0.0    1.0  1  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
      5e-11   39.7   0.0    5.9e-11   39.5   0.0    1.0  1  TIGR02316 propion_prpE: propionate--CoA ligase
    1.1e-09   35.1   0.0    1.4e-09   34.7   0.0    1.1  1  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    5.9e-07   26.4   0.0    7.4e-07   26.1   0.0    1.1  1  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    2.8e-06   24.1   0.0    3.5e-06   23.8   0.0    1.1  1  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase
    3.6e-05   19.1   0.0    0.00026   16.2   0.0    1.9  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
  ------ inclusion threshold ------
      0.012   11.9   0.0      0.016   11.6   0.0    1.0  1  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1


Domain annotation for each model (and alignments):
>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   5.5e-23   1.9e-20     319     441 ..       9     145 ..       3     146 .. 0.87

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 5.5e-23
   TIGR01923 319 teaveeqGwlktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeDsefGq.vPvayikses............eiskakltaylkek.laKyKvPiafekldelpkeasgKilRnk 441
                    ++++ w+   Dlg +d+ g+l   +R++d++  GGE +  +e+E+vl  +p+v+e++v p+ D+++G+ v  a++ +              + + a ++ +++++ la yK P+  +++d lp+++sgK+l+++
  MMETSP1061-20121228|7044_1   9 GSSSNDHRWFLGTDLGFWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAVFPRRDERYGEaVACAVVPAAGkpgldrgpdavlDLDLAAIKHWCRQRgLAGYKQPKFLVRVDSLPRNSSGKLLKHE 145
                 56678889**************************************************************73445555443356666677777788999******9977************************9877 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   0.0   2.9e-20   9.8e-18     414     536 ..      13     146 ..       6     148 .. 0.85

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 2.9e-20
   TIGR03208 414 daegwfdtgdlafldaegyiriagrskdviirggenipvveieallykhpavaqvaivaypderlgera.cavvvl..ktga........sldfaalveflkaqkvalqyiperlvvrdalpatpagkiqkfrl 536
                 + + wf   dl f d  g +   gr+kdv+  gge +   e+ea+l  hp va+ a+    der ge + cavv    k+g          ld aa+ ++ +++ +a    p+ lv +d+lp+  +gk+ k  l
  MMETSP1061-20121228|7044_1  13 NDHRWFLGTDLGFWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAVFPRRDERYGEAVaCAVVPAagKPGLdrgpdavlDLDLAAIKHWCRQRGLAGYKQPKFLVRVDSLPRNSSGKLLKHEL 146
                 5568***************************************************************85277664222444222222222578999999999999**999*******************99876 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   3.5e-17   1.2e-14     404     525 ..      13     146 ..       2     147 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 3.5e-17
   TIGR02275 404 daeGfyitGdlvkltkeGyivveGrakdqinrGGekiaaeeienlllkhpavidaalvsledellGek.scafivvk.......ded....lkavqlrrflreaGlaeyklPdrvelidslPltavGkidkkal 525
                 +++ ++   dl   +  G +   Grakd +  GGe + a e+e  l  hp v ++a+   +de  Ge  +ca++ ++        +d    l  + ++++ r++Gla yk P  +  +dslP+ + Gk+ k++l
  MMETSP1061-20121228|7044_1  13 NDHRWFLGTDLGFWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAVFPRRDERYGEAvACAVVPAAgkpgldrGPDavldLDLAAIKHWCRQRGLAGYKQPKFLVRVDSLPRNSSGKLLKHEL 146
                 55567777888889999**************************************************835776643221222113332222566789********************************99876 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   6.7e-17   2.3e-14     401     513 ..      21     145 ..       3     149 .. 0.83

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 6.7e-17
   TIGR03098 401 GDlvrrDeeGflyfvgRrdemiktsGyRvsPteveevllatglvaeavvlgvpdpelGqaivlvvvesdke...........eldkkellkelrae.lPaymvPakielrealprnanGkiDrka 513
                  Dl+  D+ G l+f gR  ++++t G  v   eve+vl + + vae++v+  +d++ G+a++ +vv+  ++           +ld +++++ +r++ l  y +P+ +  +++lprn++Gk+ ++ 
  MMETSP1061-20121228|7044_1  21 TDLGFWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAVFPRRDERYGEAVACAVVPAAGKpgldrgpdavlDLDLAAIKHWCRQRgLAGYKQPKFLVRVDSLPRNSSGKLLKHE 145
                 588889********************************************************999976554222222222224678899999*9866***********************97665 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   4.6e-15   1.6e-12     480     599 ..      17     144 ..       7     158 .. 0.83

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 4.6e-15
   TIGR02188 480 lyftGDgarrdkdGyiwilGRvDdvinvsGhrlgtaeiesalvsheavaeaavvgvpdeikgeaivafvvlkegveedee......ele.kelkklvrke.igpiakpdkilvveelPktRsGkimRR 599
                  ++  D    d+ G +w  GR+ dv++  G  + + e+e+ l  h+ vae+av  + de  gea+++ vv  +g+   ++      +l  + +k++ r++ ++ + +p+ +  v++lP+  sGk+++ 
  MMETSP1061-20121228|7044_1  17 WFLGTDLGFWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAVFPRRDERYGEAVACAVVPAAGKPGLDRgpdavlDLDlAAIKHWCRQRgLAGYKQPKFLVRVDSLPRNSSGKLLKH 144
                 5666799999********************************************************999988877644444555443321345667765438899*******************9975 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.0   1.7e-14   5.9e-12     384     505 ..      16     146 ..       2     149 .. 0.80

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.7e-14
   TIGR02262 384 ewtrsGdkyvrnddGsytyaGrtddllkvsGiyvspfevesaliaheavleaavvgaededglikpkafvvlrsga...did.....ealeeelkehvkdk.lapykyprwievvddlpktatGkiqrfkl 505
                  w    d    +d G+  + Gr+ d+++  G  v   eve+ l  h++v e av +  de         vv++ g+   d +     ++    +k++ +++ la yk p+++  vd+lp+ ++Gk+ ++ l
  MMETSP1061-20121228|7044_1  16 RWFLGTDLGFWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAVFPRRDERYGEAVACAVVPAAGKpglDRGpdavlDLDLAAIKHWCRQRgLAGYKQPKFLVRVDSLPRNSSGKLLKHEL 146
                 5777777788899***********************************************9888888888886654222333321123334567888988669**********************998876 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.7e-13   5.9e-11     477     599 ..      21     147 ..      10     157 .. 0.77

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 1.7e-13
   TIGR02316 477 ldwgirdedgytfilgrtddvinvaghrlgtreieesvsshaavaevavvgvkdelkgqvavafailkeadsve.daddahalekelma....lvesqlgavarparvyvvaalpktrsgkllrraiq 599
                  d g  d+ g     gr+ dv+   g  + +re+e  +s h++vae av   +de  g+   a a++  a + + d+     l+ +l a    + ++ l  + +p  +  v++lp+  sgkll+  + 
  MMETSP1061-20121228|7044_1  21 TDLGFWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAVFPRRDERYGEAV-ACAVVPAAGKPGlDRGPDAVLDLDLAAikhwCRQRGLAGYKQPKFLVRVDSLPRNSSGKLLKHELI 147
                 688999***************************************************9854.4444444444331433333333333331112556677788899999999************98765 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   4.1e-12   1.4e-09     411     540 ..       5     146 ..       1     147 [. 0.75

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 4.1e-12
   TIGR03205 411 aeesaeafvgdr.fltgdigyvdrdgyfflvdrkkdmiisggfnvypqmieqaiyelpavqevivigipdqyrgeaakafv...klregak..p.....fsldelraflagk.lgkhelpvavelvdelprtsvgklsrhel 540
                 ++ s  +  + r fl  d+g+ d  g +++  r kd++ +gg  v  + +e  +  +p+v e  v+   d+  gea  + v     ++g    p     + l +++ + + + l  ++ p  +  vd lpr s gkl +hel
  MMETSP1061-20121228|7044_1   5 NNSSGSSSNDHRwFLGTDLGFWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAVFPRRDERYGEAVACAVvpaAGKPGLDrgPdavldLDLAAIKHWCRQRgLAGYKQPKFLVRVDSLPRNSSGKLLKHEL 146
                 44455555566648899**********************************************************97655513222333221231111123334555544323777899**********************8 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.2e-09   7.4e-07     351     409 .]      11      69 ..       3      69 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.2e-09
   TIGR01733 351 ksegerlYrTGDlvrlradGeleflGRaDdqvKirGfRielgEieaalaelpgveeavv 409
                 +s+++r++   Dl+ +++ G+l f GRa d v+  G  +   E+ea+l+ +pgv+e++v
  MMETSP1061-20121228|7044_1  11 SSNDHRWFLGTDLGFWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAV 69 
                 34455999999**********************************************98 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0     1e-08   3.5e-06     284     385 ..      25     141 ..       5     142 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1e-08
   TIGR02372 284 rWddervfvieGrldeilqvgGvnvspghvkdvLeaepavealav..rld...GerLkafivvaeda...d...eeeleaeLra...ta.aehLpaparPddlrfgteLPrtaaGkl 385
                  Wdd +++   Gr  ++++ gG  v   +v+ vL  +p+v+++av  r d   Ge +   +v+a++    d   ++ l+ +L a   +  +++L   ++P+ l     LPr++ Gkl
  MMETSP1061-20121228|7044_1  25 FWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAVfpRRDeryGEAVACAVVPAAGKpglDrgpDAVLDLDLAAikhWCrQRGLAGYKQPKFLVRVDSLPRNSSGKL 141
                 5********************************************664442225566667777764322232213457777765222332578999999999999999999999997 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   7.7e-07   0.00026     678     819 ..      16     143 ..       5     155 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 7.7e-07
   TIGR03443 678 rlyrtGdlGrylPdGnvecsGraddqvkirGfrielGeidthlsrhPlvrenvtlvrrdkdeektlvsyivpkeekdeleelkaekdeeeeedkvvkglikyrklikdikeylkkk.lasyavPtvivplkklPlnPnGkvdk 819
                 r +   dlG +   G+    Gra d v+  G  +   e+++ ls hP v e   + rrd+   +++ + +vp + k+ l++  +          v++      +    ik++ +++ la y  P  +v ++ lP n  Gk+ k
  MMETSP1061-20121228|7044_1  16 RWFLGTDLGFWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAVFPRRDERYGEAVACAVVPAAGKPGLDRGPD---------AVLDL-----D-LAAIKHWCRQRgLAGYKQPKFLVRVDSLPRNSSGKLLK 143
                 667778******************************************************999999999999988777765422.........22221.....1.23455555544466677777777777777777666665 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.6e-05     0.016     372     500 ..      13     148 ..       3     151 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.6e-05
   TIGR01734 372 egkrayrtGDagtieddgllfyqGrlDfqiklnGyrieLedieanlkkskyikeavvvPkynkdekveaLiaavvake........edfekelkltkaikkeLkki.lmeymiPrkfiykdklpltanGkiDrkalae 500
                 +++r +   D g+ +d g l + Gr    ++  G  +   ++ea l     + e++v P+  ++   ea+  avv+           d   +l+l +aik+   ++ l  y  P+ ++  d+lp ++ Gk+ + +l++
  MMETSP1061-20121228|7044_1  13 NDHRWFLGTDLGFWDDRGRLWFGGRAKDVVRTGGETVLAREVEAVLSGHPGVAECAVFPRR-DERYGEAVACAVVPAAgkpgldrgPDAVLDLDL-AAIKHWCRQRgLAGYKQPKFLVRVDSLPRNSSGKLLKHELIA 148
                 5666677789**************************************************9.555556666667776656565433333344455.788887765438899999999999999999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 907.43
//
Query:       MMETSP1061-20121228|7043_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 1033.91
//
Query:       MMETSP1061-20121228|7045_1  [L=685]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.097    8.8   2.7       0.12    8.5   1.9    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
       0.25    8.2   6.9        0.4    7.6   4.8    1.2  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   1.9   5.9e-05      0.12     297     407 ..      91     257 ..       2     292 .. 0.61

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 5.9e-05
   TIGR00934 297 s..................................................rriqekikrrlstssiekns............qqnltrlaktksfdd.skavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngn 407
                 +                                                    i+++++++                      q + +++ +++ +++ + + +l+ ++++ + ++  l++ +++k+ q+  e++ k+  ++k+ +++++++ ++ + ++++k+s++++ ++++
  MMETSP1061-20121228|7045_1  91 GrrgpgrnhgggiagrslkwrimlmlfsvasvfqlflqlkyfpvdrigveiEEINKEVNKARL-------HdygqrleqlsglQPQQHQKDDEEEEEQrQYQLQLQIQTLQSQLDQLRLDHEEQKKKIQSQPEQHQKEEATEKSPLETKQREVEFLSIAPIYKDSKNTHLQTKK 257
                 144444445555555555555555555555555555555555553333333233333332222.......1444444466676444444444444444456678889999999999999999999999**9***9******************************999888776 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   4.8   0.00019       0.4      20      85 ..     170     234 ..     143     264 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00019
   TIGR01554  20 edekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeeaaea 85 
                 + +k++e+eee+++++ l+ +i+ l++++++l+   +e+++k ++++e+ ++ee+ e+ + e++++
  MMETSP1061-20121228|7045_1 170 QHQKDDEEEEEQRQYQ-LQLQIQTLQSQLDQLRLDHEEQKKKIQSQPEQHQKEEATEKSPLETKQR 234
                 4467777788888887.*************************************999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 2443.58
//
Query:       MMETSP1061-20121228|7050_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1168.35
//
Query:       MMETSP1061-20121228|7054_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 967.92
//
Query:       MMETSP1061-20121228|7051_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-15   53.2   0.6    1.2e-14   52.5   0.4    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    2.7e-13   47.9   0.1    5.8e-13   46.9   0.1    1.4  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
      1e-07   29.9   0.0    3.1e-07   28.4   0.0    1.8  1  TIGR01068 thioredoxin: thioredoxin
    0.00099   16.6   0.0     0.0019   15.7   0.0    1.4  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
  ------ inclusion threshold ------
      0.031   11.8   0.1      0.072   10.6   0.0    1.6  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
      0.034   10.6   0.0      0.052   10.0   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.4   1.8e-17   1.2e-14      18      87 ..      71     144 ..      61     148 .. 0.86

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 1.8e-17
   TIGR01130  18 nelvLveFYAPWCGHCksLaPeYekAAeelk....kkspkvklakvDateekelaqkygvsGyPtLkifrnges 87 
                 n++ +veFYA WC HC +L PeY++ A+++k    + + +v    v +  +++l+++ +v+ yP Lk++ +g++
  MMETSP1061-20121228|7051_1  71 NHIRVVEFYAHWCPHCAALRPEYNAFAKKMKaieqEYNIEVDFYAVSCVPHRKLCRELDVHSYPRLKLIVDGDT 144
                 66779************************983322345678889***************************985 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.1   8.4e-16   5.8e-13      14      83 ..      71     144 ..      65     153 .. 0.84

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 8.4e-16
   TIGR01126  14 nkdvlvefyaPWCGhCkklaPeyeklakelkkeee....kvkiakvdataekelaskfkvsgfPtlkffkkgkk 83 
                 n+  +vefya WC hC +l Pey+  ak++k+ e+    +v    v +  +++l+++++v+++P lk++ +g++
  MMETSP1061-20121228|7051_1  71 NHIRVVEFYAHWCPHCAALRPEYNAFAKKMKAIEQeyniEVDFYAVSCVPHRKLCRELDVHSYPRLKLIVDGDT 144
                 55678************************99755412123455799**********************999986 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   4.5e-10   3.1e-07      16      85 ..      73     149 ..      63     157 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 4.5e-10
   TIGR01068  16 lvlvDfwAeWCgpCkmlaPv.......leelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvv 85 
                   +v+f+A+WC  C +l P        ++ +++e++ +v+++ +    ++++ ++ +++s P l l+ +g++vk ++
  MMETSP1061-20121228|7051_1  73 IRVVEFYAHWCPHCAALRPEynafakkMKAIEQEYNIEVDFYAVSCVPHRKLCRELDVHSYPRLKLIVDGDTVKGAI 149
                 559**************9982222222344566778899999999999***********************999776 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   2.8e-06    0.0019      22      99 ..      27     106 ..      21     113 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.8e-06
   TIGR00385  22 naegedikelesaligkpvpaekeaelkekvqlltaevlkkgklv...LlnvwasWCptCraehplLkelakeglrivgvd 99 
                 n+e ed+++l   l + +   ++ +  +++ ++ +++ l k+++    ++ ++a WCp C a  p  + +ak+ ++ +  +
  MMETSP1061-20121228|7051_1  27 NSEDEDPEDLYFYLFDDESVVTEFKGPPNEEETEEPDFLYKPQPNhirVVEFYAHWCPHCAALRPEYNAFAKK-MKAIEQE 106
                 6677888888888888887777777777888899999999988752237899*****************9999.6666555 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0001     0.072      45      81 ..      66     102 ..      34     121 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0001
   TIGR02738  45 rkvlledyklvlfyqstCpyChqfapvLkqlsqqtgl 81 
                 +k   ++  +v fy   Cp+C    p   ++++++++
  MMETSP1061-20121228|7051_1  66 YKPQPNHIRVVEFYAHWCPHCAALRPEYNAFAKKMKA 102
                 5566778899***********9877766666666553 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   7.5e-05     0.052     376     402 ..      75     101 ..      58     139 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 7.5e-05
   TIGR00424 376 lvvlyapwcpfcqameasyvelaekla 402
                 +v +ya wcp c a+   y  +a+k+ 
  MMETSP1061-20121228|7051_1  75 VVEFYAHWCPHCAALRPEYNAFAKKMK 101
                 6889*******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 2037.58
//
Query:       MMETSP1061-20121228|7052_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-109  363.6  18.0    7.8e-58  194.0   5.8    2.0  2  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.0   5.8   1.9e-61   7.8e-58       3     201 ..      49     249 ..      47     267 .. 0.95
   2 !  175.1   1.4   9.7e-56     4e-52     207     436 ..     310     546 ..     298     563 .. 0.90

  Alignments for each domain:
  == domain 1    score: 194.0 bits;  conditional E-value: 1.9e-61
   TIGR00811   3 svidgikqaysmalvifsvvivtalmftdntkla..kdahpvaalvimwlgilwmsmveggqcsmvglppidrdlykeshpitykicslghkgnnldrylmgrqflvifinftinlcgaplegaevlglpeiltdiflgsgiamvltvvtigqltaqvnashcmldyinthfmtftlyvtliievtgvmhscylirdmfyf 201
                 s +  ik++ sm+l++fsvv+++a ++t +t  +  ++ hp+ al i+wl ++w+ ++egg   mvgl pi ++lyk+shp t+   s+ hkg+n++r+++grq+l ++i f   +  + ++ga vlglp+i+ diflgs +a++l  + +gql aq+n++h mld+in  +m  + yv+l +e++g++h++y+++ +f  
  MMETSP1061-20121228|7052_1  49 SILSAIKKVASMVLILFSVVVISAAIITKQTVATgeNNVHPLLALAIFWLSLFWLGIMEGGLNCMVGLQPIPKHLYKKSHPKTHLCTSISHKGQNIERFIVGRQYLDLMIVFITSFMVSAIDGASVLGLPKIVNDIFLGSDLAVILCTIVFGQLIAQINCAHSMLDFINNWVMVASTYVALCVEASGILHAVYFVQIIFTK 249
                 78899************************9987633679************************************************************************************************************************************************************999865 PP

  == domain 2    score: 175.1 bits;  conditional E-value: 9.7e-56
   TIGR00811 207 vetnepprsavqnlfhwgrvvfslgvlcfalavtlealfkgkttmwefipngvavvlfvllmslvgllegmqiaffavakipkaergdhpfarktcellfkgngr..n........lpgfmvgrqltvtlcffiiarvttldievgvddnifgvsdgiqe.ffnlgflgaiittilasiawqlvasafpiaflsnpvvyivlrivllieatgicagawflgmihkkvagfqldevyvgtae 436
                 +e+n+p     q +f wgrvvfsl +  fa+ v   al++g tt+ + ip  v+ v +++l+ l g++e +qia+fav ++p       p a++ ce ++ g g   n        l  f+vgrq++ t+ +f+iar+ t++++v   + +fgvs  iq  ff+ g+l a+++ti+as++w++ a  fpi +l  p    ++r+ ll+e tgic +aw+l  i   + g++ de ++g a 
  MMETSP1061-20121228|7052_1 310 IESNKP---LWQTIFFWGRVVFSLAIAIFAIVVFSTALVNGGTTVRDEIPISVSFVSLLILLILGGFMEALQIALFAVKHLPSERIEASPTAKRNCEYILGGTGSrsNdsektnsrLQAFLVGRQIAQTVIMFMIARIITVEMKVEG-QTLFGVSPQIQAvFFDSGLLNALVSTIFASLSWRVTANFFPILYLGSPFSIWIIRLCLLVEGTGICDAAWLLAKIPACIVGYKSDEEWIGLAS 546
                 555555...5699*********************************************************************999999************9988423133333344899*********************9999874.689********6589***************************************************************************874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 2879.32
//
Query:       MMETSP1061-20121228|7059_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|7063_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 2128.32
//
Query:       MMETSP1061-20121228|7066_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2030.60
//
Query:       MMETSP1061-20121228|7058_1  [L=1598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       607  (0.147977); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.05u 0.18s 00:00:01.23 Elapsed: 00:00:00.57
# Mc/sec: 3636.53
//
Query:       MMETSP1061-20121228|7064_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.6   0.1       0.12   10.1   0.0    2.1  2  TIGR02909 spore_YkwD: uncharacterized protein, YkwD family


Domain annotation for each model (and alignments):
>> TIGR02909  spore_YkwD: uncharacterized protein, YkwD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.022        89      23      42 ..     255     274 ..     252     279 .. 0.87
   2 ?   10.1   0.0     3e-05      0.12      73     118 ..     334     384 ..     311     391 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.022
   TIGR02909  23 pLkvdeelskvarlksedma 42 
                 p+ v++els  ar+++++++
  MMETSP1061-20121228|7064_1 255 PVVVNPELSCAARIQAQNIV 274
                 7889************9986 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 3e-05
   TIGR02909  73 eniaagnstvekvvealmns.eghraniLspe....yteiGvglvksgsyg 118
                 e  a g+ t+e+vv++++ s +gh + i ++e     te+G+g++++g ++
  MMETSP1061-20121228|7064_1 334 EVTAVGYGTAEAVVDGWLAStSGHCSAIAKQEspviATEVGIGYYEYGGIT 384
                 677999************98469*9999988733335899****9998663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1737.86
//
Query:       MMETSP1061-20121228|7069_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1220.90
//
Query:       MMETSP1061-20121228|7070_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1124.78
//
Query:       MMETSP1061-20121228|7072_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1145.67
//
Query:       MMETSP1061-20121228|7071_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    9.5   5.2       0.81    8.3   1.1    2.9  2  TIGR01384 TFS_arch: transcription factor S


Domain annotation for each model (and alignments):
>> TIGR01384  TFS_arch: transcription factor S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.03   1.2e+02      21      57 ..     139     164 ..     110     200 .. 0.48
   2 ?    8.3   1.1    0.0002      0.81      78     100 ..     381     402 ..     321     403 .] 0.82

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.03
   TIGR01384  21 kcGyekekkkkeklkvtekvkekkketilveeeelet 57 
                 +c y             + v++  +++i v++ee++ 
  MMETSP1061-20121228|7071_1 139 SCYYTT-----------SAVRQDPEKHISVMKEEERN 164
                 444433...........34444444444333333222 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0002
   TIGR01384  78 trrdepetrfykckkcgkvwrey 100
                  r de  +rf +c++cg++w e 
  MMETSP1061-20121228|7071_1 381 DRGDEVVSRF-QCNRCGRTWNEA 402
                 5889998886.9********985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 1085.54
//
Query:       MMETSP1061-20121228|7067_1  [L=781]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.7   0.1      0.009   13.2   0.0    2.1  2  TIGR03843 TIGR03843: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR03843  TIGR03843: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.043   1.8e+02      52      77 ..     209     233 ..     205     238 .. 0.81
   2 !   13.2   0.0   2.2e-06     0.009     133     184 ..     304     360 ..     278     397 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.043
   TIGR03843  52 LakREvaaylvsealgwelvPptvlr 77 
                  + REvaa+++    g++ vP t l 
  MMETSP1061-20121228|7067_1 209 ACVREVAAFMLD-HGGFSGVPMTTLV 233
                 578******996.68******99875 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2.2e-06
   TIGR03843 133 eelrrlavfDvlvNNaDRKggHvlegk...dg..rvygvDhgvtfhaeeKLRtvlWg 184
                 ee++++a++D+ + NaDR ++ +l  +   dg  ++  +Dhg ++ +      + W 
  MMETSP1061-20121228|7067_1 304 EEVHKIAILDIRLMNADRNSANLLVRRrksDGslELVPIDHGFCLRSVADTSWMDWC 360
                 6899********************76433366334789******9876655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 2945.24
//
Query:       MMETSP1061-20121228|7073_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1061-20121228|7075_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 444.59
//
Query:       MMETSP1061-20121228|7074_1  [L=821]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (821 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.32
# Mc/sec: 3386.35
//
Query:       MMETSP1061-20121228|7081_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.4   0.6      0.039   11.0   0.0    2.9  4  TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02027  rpoA: DNA-directed RNA polymerase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   9.5e-06     0.039      15      39 ..      69      93 ..      64     103 .. 0.84
   2 ?   -3.6   0.1      0.25     1e+03     218     256 ..     152     190 ..     136     193 .. 0.51
   3 ?   -1.4   0.0     0.056   2.3e+02     104     132 ..     225     253 ..     214     269 .. 0.75
   4 ?    0.9   0.0     0.011        45     176     216 ..     340     380 ..     331     382 .] 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.5e-06
   TIGR02027 15 tTlGnaLRRvLLssiegaaitavki 39
                   +naLRR+LL++++ +ai +v +
  MMETSP1061-20121228|7081_1 69 ASFANALRRILLAEVPTVAIENVYM 93
                5679****************98865 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.25
   TIGR02027 218 eeekeeekeekekskllslkieeldLsvRslNcLkragi 256
                  ++k+  +++++ +++ +  +e+ dL   ++ + k++ i
  MMETSP1061-20121228|7081_1 152 AKKKKADEDDDALTETEQSVLENTDLDRAAFLAAKKEAI 190
                 222222233335555556666666666666666666655 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.056
   TIGR02027 104 vnpdlviatltedakleielkverGrGyv 132
                 v  d  ia+l   +++e+e ++++G G  
  MMETSP1061-20121228|7081_1 225 VHDDILIAKLRPGQEIELEAHARYGIGQD 253
                 56778888888888888888888887754 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.011
   TIGR02027 176 kLileieTdgsispkeAlaeAakilkehlevfveleeeeee 216
                 + i+ +e  g  +p   +aeA k+l+++ + + +l++++ee
  MMETSP1061-20121228|7081_1 340 HFIFSVESVGMHKPAVLVAEALKVLQKKCKDLIDLTKQQEE 380
                 678999999*********************99999987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 2192.17
//
Query:       MMETSP1061-20121228|7084_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|7077_1  [L=789]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.1e-202  670.9   1.4     5e-202  670.6   0.9    1.1  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D
   1.7e-187  622.6   0.0   2.5e-187  622.0   0.0    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
    2.5e-67  225.3   0.3    3.5e-67  224.8   0.2    1.2  1  TIGR02030 BchI-ChlI: magnesium chelatase ATPase subunit I
    1.8e-08   31.1   0.1    3.2e-08   30.3   0.0    1.3  1  TIGR03788 marine_srt_targ: marine proteobacterial sortase target protein
    6.3e-08   29.4   0.1    1.9e-05   21.2   0.0    2.3  2  TIGR00368 TIGR00368: Mg chelatase-like protein
    3.5e-06   23.7   0.1     0.0062   13.0   0.0    2.3  2  TIGR00764 lon_rel: putative ATP-dependent protease
     0.0026   14.1   0.1      0.018   11.4   0.1    2.0  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
     0.0097   12.4   0.0      0.037   10.4   0.0    1.8  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
  ------ inclusion threshold ------
      0.013   12.2   0.0       0.54    6.8   0.0    2.3  2  TIGR02915 PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
      0.015   11.9   0.0        1.3    5.5   0.0    2.2  2  TIGR01818 ntrC: nitrogen regulation protein NR(I)
       0.03   11.4   0.0      0.058   10.4   0.0    1.4  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
       0.63    8.3  13.9      0.045   12.0   1.7    3.1  3  TIGR03685 L21P_arch: 50S ribosomal protein L12P
        8.9    4.3  12.3         24    2.9   8.5    1.6  1  TIGR02557 HpaP: type III secretion protein HpaP


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  670.6   0.9  1.6e-204    5e-202       1     608 []     100     777 ..     100     777 .. 0.90

  Alignments for each domain:
  == domain 1    score: 670.6 bits;  conditional E-value: 1.6e-204
   TIGR02031   1 ervklAllllavDpelgGvairaraGtaktalaralaeiLpeieelegs...................................kaplvelplgvtedrLlGgiDveeslasgkrvlqkgllaeanrgvlyvdelnlldeslvnrlldaldegvvivereGisvrePakfvLiatydpeegeealrehllDRlalivsle.evaslearveivrl.............elaeeveeevndelelakaqiekaRellkqVtiseeqvkelvleavklGveghRadlfavraAkalaAlegReeVeeeDlklAvelvllpRatrleekepeqee.ppppPpPp.....epesegeeeedeeeeeeee......keee...........qlpeelildAveallpeeiLellqkaqagrkkkgksGakgeqisneRGRyirsllgkkesgkrvavvatLraAaPyqklRreekakk..kerkviveasDlriKrfkrksgalliFvVDASGsaavaRlseAKGAvelLLqeaYvsRDqValiaFRGeaaevLlpPsrSvelakrrldalPtGGgtPLAaalaaavevakqarksg.vlritivliTDGRaNvaldas....adPesakadr......eelkeevlalarkir.eagisalviDTankfvstGeakklArklqakYiyLPnakaasia 608
                 +++k+ lll+++   +gGv+i++ +Gtak+++aral+++Lp+ie+++gs                                   + p+v++pl+v edrLlG+ D+ees++ gk+v+ +glla+a+rgvlyvd +nllde++ n ll+++++g v vereG+s+r+P++++Liat +pee  + lr+hllDR+a+ +s++ ++ + e+rv++v+              e+ +   e +++e  l++a i  aRe++k+ +++  q+++l +ea++ G +ghRa++fa  +A+ +aAlegR +V+++Dl+lAv+l ++pR t  +++ +++e  ppppPpPp     e     ++e+ +ee+eeee      +  e           ++p+e+++dA  + +++++++++ +     +++gk G +g ++s++RGRyi+++l+k +++ r+av+atLra aPyqk+Rre+++    + r v++e+sD+riK+++rk+g l+iF+VDASGs+a++R++ AKGA+ +LL eaY sRDq+ li+F Ge aevLlpP++S+++a++rl+++P+GGg+PLA al++av ++++a+ksg v++++ vl+ DGRaNv+l  s     dPe++++++      + lk+evla a+++  + g+ +l iDT+nkf stG ak++A+++++kY  + +a+++ ia
  MMETSP1061-20121228|7077_1 100 DNIKQSLLLASINNRMGGVVISGGKGTAKSVMARALHQLLPPIEVIKGSqfnidpegefgmddylkldianggvpleereteviPCPFVQVPLNVMEDRLLGSADLEESVKTGKTVFSPGLLAKAHRGVLYVDDINLLDEETANILLNIVTDGYVLVEREGLSLRYPCRPLLIATFNPEE--GELRDHLLDRIAVSLSADaQPLDNEERVAAVKSvlefsasgaqgsvEAESALAEAIENEDDLKTA-IVFAREYIKELKVAPSQIQYLCEEAIRAGCQGHRAEIFACEVARSAAALEGR-QVNSDDLRLAVKLAIAPRGTFVNTPMDDDEMmPPPPPPPPppqmdE----QQNEDRDEEDEEEEeqqepeD--EedqeqdapdvpEVPQEFMFDADATPIDPDLIAFTSR-----ERSGKGGGRGMIFSQDRGRYIKPMLPK-GKVIRLAVDATLRASAPYQKARRERAIGTkyESRGVHIEQSDVRIKKMARKAGSLIIFIVDASGSMALNRMNAAKGAAISLLMEAYQSRDQICLIPFQGETAEVLLPPTKSISMARNRLEQMPCGGGSPLADALQTAVLTGMNAQKSGdVGKVVCVLLSDGRANVPLCVSkgeeFDPENDEDSKdgkpsrNYLKDEVLACAKQLGvAPGFNLLCIDTENKFISTGLAKEIANAAGGKYHQISKADGSAIA 777
                 689*********************************************************************************************************************************************************************************..99*************997357899*******9999******999977777777777777776666.77**************************************************.5*******************98876554444355555444333331....222222222222222333332..134678999999*******************998776.....57899**********************.9999*********************98774449******************************************************************************************************************99******************6541112699999887788888899***********96266**********************************99998875 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  622.0   0.0  7.9e-190  2.5e-187       1     640 [.      91     768 ..      91     769 .. 0.86

  Alignments for each domain:
  == domain 1    score: 622.0 bits;  conditional E-value: 7.9e-190
   TIGR02442   1 fPfsaivgqeklklaLllnavdpkiggvlirGekGtaKstaaRaLaallpdievvagckfscdpedpeelceecrkkle........lesekr...pvpfvelplgateDrvvGsldieralkeGekafqpGlLaeahrgiLYiDEvNLLddhlvdvlLdaaasGvnrvEReGlsvshparfvLvgTmNpEEGeLrpqllDrfglavevaa.sedpeerveivkrrlafdadpe.......afaakykkeeeelrerivaArsllpevrlsdelleliaelcieleveghRAdivlaraaralAAldgrrevteedvreaaeLvlkhRrr..rkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrsdkrgryvkaernreeaddlavdAtlraaalrqkar.......rk...avaveeedlrekvregragalvifvvDASgSMaarkrmkaakgavlsLLrdaYqkrdkvaliaFrgeeaevllpptssvelakreLeelptggrtPLaagLkkaaevlknellkdkderplvvvitDGraNva.s.........lgedpledartlaeklaae............giklvvidteesefvklglakdlaealgaeylel 640
                 fP+s ivgq+++k++Lll+ +++++ggv+i+G kGtaKs++aRaL++llp+iev++g +f+ dpe    +++  +  ++         e   +   p pfv++pl++ eDr++Gs d+e+++k+G+ +f+pGlLa+ahrg+LY+D++NLLd++  ++lL+ +  G + vEReGls++ p+r +L++T+NpEEGeLr++llDr++++++++a + d+eerv  vk +l+f a  +       +  a+  ++e+ l++ iv Ar+ ++e ++  ++++++ e++i+++++ghRA+i++ ++ar  AAl+gr +v+ +d+r a++L++++R +  ++p++++ e+ +++++  + ++ +++++ed + e+++e   ++e++ep+++   e++e+++ + ++  ++e+++++ +++++++l+a+++++++g+ G r  + s+ rgry+k+  +++++ +lavdAtlra a++qkar       +     v++e++d+r k  +++ag+l+if+vDASgSMa++ rm+aakga++sLL++aYq rd+++li+F+ge aevllppt+s+++a+++Le++p+gg++PLa +L+ a  +  n++++ +  +++ v+++DGraNv+            +++  +d +   + l++e            g++l+ idte+ +f+++glak++a+a+g++y ++
  MMETSP1061-20121228|7077_1  91 FPLSMIVGQDNIKQSLLLASINNRMGGVVISGGKGTAKSVMARALHQLLPPIEVIKGSQFNIDPEGEFGMDDYLKLDIAnggvpleeRE---TeviPCPFVQVPLNVMEDRLLGSADLEESVKTGKTVFSPGLLAKAHRGVLYVDDINLLDEETANILLNIVTDGYVLVEREGLSLRYPCRPLLIATFNPEEGELRDHLLDRIAVSLSADAqPLDNEERVAAVKSVLEFSASGAqgsveaeSALAEAIENEDDLKTAIVFAREYIKELKVAPSQIQYLCEEAIRAGCQGHRAEIFACEVARSAAALEGR-QVNSDDLRLAVKLAIAPRGTfvNTPMDDD-EMMPPPPPPPPPPQMDEQQNEDRD-EEDEE---EEEQQEPEDE---EDQEQDAPDVPE-VPQEFMFDADATPIDPDLIAFTSRERSGKGGGRGMIFSQDRGRYIKPMLPKGKVIRLAVDATLRASAPYQKARreraigtKYesrGVHIEQSDVRIKKMARKAGSLIIFIVDASGSMALN-RMNAAKGAAISLLMEAYQSRDQICLIPFQGETAEVLLPPTKSISMARNRLEQMPCGGGSPLADALQTAVLTGMNAQKSGDVGKVVCVLLSDGRANVPlCvskgeefdpENDEDSKDGKPSRNYLKDEvlacakqlgvapGFNLLCIDTEN-KFISTGLAKEIANAAGGKYHQI 768
                 9***************************************************************9988888877777778887654333...14559****************************************************************************************************************86268***************986441111000333334456788*******************************************************9.59****************99978888885.444444433333333333333333.22222...2222234444...444444444444.36679*****************999***********************************************98777655215689********************************99.************************************************************************************************964665544332111122233333344554478888889888***********7.*******************987 PP

>> TIGR02030  BchI-ChlI: magnesium chelatase ATPase subunit I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.8   0.2   1.1e-69   3.5e-67       1     313 [.      91     414 ..      91     427 .. 0.89

  Alignments for each domain:
  == domain 1    score: 224.8 bits;  conditional E-value: 1.1e-69
   TIGR02030   1 fpfsaivGqeelklallltvidpkiGGvlvlGdrGtgkstavralaallpeikavagcpvnsapsareelceevraledss....kklaviekkvpvvdlplGatedrvvGtldieralteGvkafepGllaranrGflyidevnlledhlvdvlldvaasGvnvvereGvsirhparfvlvGsGnpeeGelrpqlldrfGlhaeir.tvrdveerveivkrrdeydad........pdafvekyakedeklqakivnaqaalpqvklpddvlvkvaelcvelevdGlrGeltlaraakalaaleGreevtvddvrrvavlalrhr 313
                 fp+s ivGq+++k++lll+ i+ ++GGv++ G +Gt+ks   ral +llp+i++++g+ +n  p+ + ++ + ++    +     ++     ++ p v++pl + edr+ G+ d+e ++  G+  f pGlla+a rG+ly+d++nll++   ++ll++ + G   vereG+s+r+p r +l+ + npeeGelr  lldr+ ++      + d eerv  vk   e+ a         + a+ e  + ++++l++ iv a++ + ++k+  +  + ++e  ++ +++G+r e+     a++ aaleGr+ v  dd+r  + la+  r
  MMETSP1061-20121228|7077_1  91 FPLSMIVGQDNIKQSLLLASINNRMGGVVISGGKGTAKSVMARALHQLLPPIEVIKGSQFNIDPEGEFGMDDYLKLDIANGgvplEERETEVIPCPFVQVPLNVMEDRLLGSADLEESVKTGKTVFSPGLLAKAHRGVLYVDDINLLDEETANILLNIVTDGYVLVEREGLSLRYPCRPLLIATFNPEEGELRDHLLDRIAVSLSADaQPLDNEERVAAVKSVLEFSASgaqgsveaESALAEAIE-NEDDLKTAIVFAREYIKELKVAPSQIQYLCEEAIRAGCQGHRAEIFACEVARSAAALEGRQ-VNSDDLRLAVKLAIAPR 414
                 8****************************************************************999999888776655455665555555799*********************************************************************************************************99887751578***************98522111111234444444.4568****************9988888888999**************************95.999***99999988655 PP

>> TIGR03788  marine_srt_targ: marine proteobacterial sortase target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0     1e-10   3.2e-08     274     379 ..     583     688 ..     563     691 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1e-10
   TIGR03788 274 vvfviDtsGsmagesieqAk.salllalsqLkpkDrfnvieFdsdvellfkkavpAtaenlerArqfvagLqAdGGtEmaeaLeaa.ledaaseesgalrqvv..FltDG 379
                 ++f++D sGsma + ++ Ak +a+ l ++  +++D++ +i F+ ++ ++    +p  ++ ++ Ar+ ++++   GG  +a aL++a l+  ++++sg + +vv   l DG
  MMETSP1061-20121228|7077_1 583 IIFIVDASGSMALNRMNAAKgAAISLLMEAYQSRDQICLIPFQGETAEVL---LP-PTKSISMARNRLEQMPCGGGSPLADALQTAvLTGMNAQKSGDVGKVVcvLLSDG 688
                 8*******************4468889999************99887543...33.457899*********************987255788999999999862256776 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0025      0.78     189     239 ..      91     143 ..      51     149 .. 0.81
   2 !   21.2   0.0   6.2e-08   1.9e-05     278     348 ..     208     278 ..     201     350 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0025
   TIGR00368 189 ldlkdvkGqqrakraleiaaaGgh..nllllGPPGsGktllakrlqgllPelt 239
                 + l+ ++Gq++ k++l +a   +    +++ G  G+ k ++a+ l+ llP+++
  MMETSP1061-20121228|7077_1  91 FPLSMIVGQDNIKQSLLLASINNRmgGVVISGGKGTAKSVMARALHQLLPPIE 143
                 56889***********999876642269999*******************986 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 6.2e-08
   TIGR00368 278 alvGGGaiPkPGeislahnGvlfldellefkrkvldalrePledgeisisrakakilyParfqlvaamnps 348
                 ++  G ++  PG ++ ah+Gvl++d++  ++ ++ + l + + dg + + r    + yP r  l+a+ np 
  MMETSP1061-20121228|7077_1 208 SVKTGKTVFSPGLLAKAHRGVLYVDDINLLDEETANILLNIVTDGYVLVEREGLSLRYPCRPLLIATFNPE 278
                 5556888999***********************************************************95 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00051      0.16      19      65 ..      95     143 ..      91     154 .. 0.87
   2 !   13.0   0.0     2e-05    0.0062     209     242 ..     217     250 ..     194     262 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00051
   TIGR00764  19 qviGqdeavevikkaakqkrn..vlliGePGvGksmlakamaellpkee 65 
                  ++Gqd+  + ++ a  + r   v++ G  G+ ks++a+a+ +llp  e
  MMETSP1061-20121228|7077_1  95 MIVGQDNIKQSLLLASINNRMggVVISGGKGTAKSVMARALHQLLPPIE 143
                 589*****9999999888884449999******************9876 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2e-05
   TIGR00764 209 eaGaihrahkGvlyideiatlslkvqqslltalq 242
                  +G++ +ah+Gvly+d+i+ l  ++ + ll  + 
  MMETSP1061-20121228|7077_1 217 SPGLLAKAHRGVLYVDDINLLDEETANILLNIVT 250
                 689*******************999999987665 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.17        53     149     194 ..      89     134 ..      79     154 .. 0.83
   2 !   11.4   0.1   5.7e-05     0.018     255     295 ..     215     255 ..     197     262 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.17
   TIGR02903 149 rpralseivGqeraikallaklaspfpqhiilyGppGvGkttaarl 194
                 rp  ls ivGq+   ++ll          +++ G  G  k+ +ar 
  MMETSP1061-20121228|7077_1  89 RPFPLSMIVGQDNIKQSLLLASINNRMGGVVISGGKGTAKSVMARA 134
                 888999*******999987555555566788899999999999985 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 5.7e-05
   TIGR02903 255 epksGlvteahGGvlfideiGeldvllqnkllkvledkrve 295
                    +Gl+++ah Gvl++d+i  ld    n ll ++ d  v 
  MMETSP1061-20121228|7077_1 215 VFSPGLLAKAHRGVLYVDDINLLDEETANILLNIVTDGYVL 255
                 5568******************************9998775 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.53   1.7e+02      60     105 ..      89     134 ..      84     138 .. 0.88
   2 !   10.4   0.0   0.00012     0.037     168     207 ..     218     257 ..     209     266 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.53
   TIGR02902  60 rpksfdeiiGqeeGikalkaalcGpnpqhviiyGppGvGktaaarl 105
                 rp  ++ i+Gq++  ++l  a        v+i G  G  k+  ar 
  MMETSP1061-20121228|7077_1  89 RPFPLSMIVGQDNIKQSLLLASINNRMGGVVISGGKGTAKSVMARA 134
                 8888999******9999998888888999***********999985 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00012
   TIGR02902 168 aGavtkahGGvlfideiGelhpvqmnkllkvledrkvfld 207
                 +G ++kah Gvl++d+i  l+  + n ll ++ d  v+++
  MMETSP1061-20121228|7077_1 218 PGLLAKAHRGVLYVDDINLLDEETANILLNIVTDGYVLVE 257
                 68899*****************************999876 PP

>> TIGR02915  PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0    0.0017      0.54     161     185 ..     114     138 ..      94     143 .. 0.82
   2 ?    2.7   0.0      0.03       9.6     191     254 ..     180     246 ..     173     274 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0017
   TIGR02915 161 sdvtvlllGesGtGkevlaralhel 185
                     v++ G  Gt k v+aralh+l
  MMETSP1061-20121228|7077_1 114 RMGGVVISGGKGTAKSVMARALHQL 138
                 555799*****************98 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.03
   TIGR02915 191 krfvaincaaiPenlleselfG...yekGaftGavkqtlGkielaqeGtlfldeiGdlPlalqakll 254
                  ++++     +P n++e  l+G    e    tG +    G +  a++G l++d+i  l  +    ll
  MMETSP1061-20121228|7077_1 180 TEVIPCPFVQVPLNVMEDRLLGsadLEESVKTGKTVFSPGLLAKAHRGVLYVDDINLLDEETANILL 246
                 5566666678999999999999444589999************************877766655555 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0    0.0041       1.3     159     179 ..     117     137 ..      93     142 .. 0.84
   2 ?    4.0   0.0     0.012       3.9     195     255 ..     189     252 ..     177     293 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0041
   TIGR01818 159 svlinGesGtGkelvaralhr 179
                  v+i+G  Gt k ++aralh+
  MMETSP1061-20121228|7077_1 117 GVVISGGKGTAKSVMARALHQ 137
                 69******************8 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.012
   TIGR01818 195 aiPkdlleselfGh...ekGaftGatkrrqGrfeqadGGtlfldeiGdmPlelqtrllrvladg 255
                  +P +++e  l+G    e+   tG t  + G + +a+ G l++d+i  +  e+   ll +++dg
  MMETSP1061-20121228|7077_1 189 QVPLNVMEDRLLGSadlEESVKTGKTVFSPGLLAKAHRGVLYVDDINLLDEETANILLNIVTDG 252
                 578889999999854458999***************************9999999999999998 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00018     0.058       9      58 ..      89     137 ..      86     148 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00018
   TIGR02397   9 rPktFedliGqehvvktLknaikknkiahayLfsGprGvGKTsiArilAk 58 
                 rP  ++ ++Gq+ + + L  a  +n++  + + sG +G+ K  +Ar l +
  MMETSP1061-20121228|7077_1  89 RPFPLSMIVGQDNIKQSLLLASINNRMGGV-VISGGKGTAKSVMARALHQ 137
                 7888899********************976.78*************9865 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1      0.05        16      23      50 ..      44      71 ..      40      83 .. 0.81
   2 ?   -3.3   0.7       7.8   2.5e+03      58      87 ..     309     338 ..     301     344 .. 0.44
   3 ?   12.0   1.7   0.00014     0.045      59      97 ..     427     467 ..     389     471 .. 0.59

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.05
   TIGR03685 23 kkvleaaGvevdearvKalvaaLedvdi 50
                 +v +  G +  e rvKa +aa e +d 
  MMETSP1061-20121228|7077_1 44 SAVADESGTSSAEERVKAAMAAEEAMDA 71
                689999999999******9999888875 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 7.8
   TIGR03685  58 aaapvaaaaaaaaaaeaaeeekeeeeeeee 87 
                 a+  v   +a+ a+ + ++e++ +e+ e+e
  MMETSP1061-20121228|7077_1 309 AVKSVLEFSASGAQGSVEAESALAEAIENE 338
                 444444444444444444443333332222 PP

  == domain 3    score: 12.0 bits;  conditional E-value: 0.00014
   TIGR03685  59 aapvaa.aaaaaaaaeaa.eeekeeeeeeeeekeeeeeeal 97 
                 ++p +  ++++++ +e++ e+++ee+eeeee++e e+ee+ 
  MMETSP1061-20121228|7077_1 427 MMPPPPpPPPPPQMDEQQnEDRDEEDEEEEEQQEPEDEEDQ 467
                 44444403444444444404445555566666666666654 PP

>> TIGR02557  HpaP: type III secretion protein HpaP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   8.5     0.075        24      23      74 ..     416     466 ..     407     490 .. 0.66

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.075
   TIGR02557  23 lslaqlrrrsavasappPrpepppscdedrPepaaetraseapaeapldadP 74 
                 + + +++  + + + ppP+p+ppp+ de++ e+++e+   e+++++p d + 
  MMETSP1061-20121228|7077_1 416 TFVNTPMDDDEMMP-PPPPPPPPPQMDEQQNEDRDEEDEEEEEQQEPEDEED 466
                 55556666666555.4555899999999999999888777777766665432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.18s 00:00:00.70 Elapsed: 00:00:00.43
# Mc/sec: 2421.85
//
Query:       MMETSP1061-20121228|7087_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 442.16
//
Query:       MMETSP1061-20121228|7083_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-11   40.0   0.0    6.8e-11   39.6   0.0    1.1  1  TIGR03600 phage_DnaB: phage replicative helicase, DnaB family
    1.3e-08   31.9   0.0    1.9e-08   31.4   0.0    1.2  1  TIGR00665 DnaB: replicative DNA helicase
    0.00028   18.3   0.4    0.00099   16.6   0.0    1.9  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    0.00036   17.7   0.0    0.00059   17.0   0.0    1.3  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    0.00042   17.7   0.0      0.001   16.4   0.0    1.6  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    0.00047   17.6   0.0    0.00098   16.5   0.0    1.4  1  TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
     0.0012   16.1   0.3     0.0029   14.8   0.0    1.7  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
     0.0015   15.8   0.0      0.003   14.8   0.0    1.4  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
     0.0016   15.8   0.0     0.0027   15.0   0.0    1.3  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
     0.0017   15.0   0.1     0.0051   13.4   0.0    1.7  1  TIGR00416 sms: DNA repair protein RadA
     0.0051   14.3   0.1      0.011   13.3   0.0    1.6  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
     0.0093   13.5   0.1      0.016   12.7   0.0    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
     0.0097   13.2   0.1      0.019   12.2   0.1    1.4  1  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
  ------ inclusion threshold ------
      0.014   13.1   0.2       0.16    9.7   0.0    2.1  2  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
      0.015   12.0   0.2      0.026   11.3   0.1    1.3  1  TIGR00634 recN: DNA repair protein RecN
      0.017   13.0   0.2      0.017   13.0   0.1    1.8  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
      0.018   12.5   0.0      0.035   11.6   0.0    1.4  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
      0.019   12.1   0.2       0.14    9.2   0.0    2.0  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
      0.019   11.7   0.0      0.028   11.2   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
      0.024   12.2   0.0      0.037   11.6   0.0    1.2  1  TIGR00960 3a0501s02: type II secretory pathway family protein
      0.035   11.5   0.0       0.09   10.1   0.0    1.7  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.037   10.4   0.0      0.053   10.0   0.0    1.1  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit


Domain annotation for each model (and alignments):
>> TIGR03600  phage_DnaB: phage replicative helicase, DnaB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.0   3.7e-13   6.8e-11     121     390 ..      74     337 ..      61     354 .. 0.76

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 3.7e-13
   TIGR03600 121 egkkaeekveeaqaallelt.gksdgqedelvtlsevledvvrslekrfekkgelaGlstGlssLDrltnGLvkgdlivigaRPsmGKTtlalniaenvalkegkavlvfslemsaeqlaerllasksgietrklktgrlndsdinklleavdrlseldl.viddkaglsvaqlrsrarrikrkkkgldlivvDylqlmaasekrdrn...eelgeis.relKalAkELdvpvvvlaQLnRalekrtdkrPilsDlRdsGaiEqDadvillihReg 390
                 ++k+a++++ +    +++   +++   +d +vt++++ +dv+++l +    +g      t l++  +l++G + g++ v+ +  + GKTt   ++ + +a ++g +vl  s e+ +  l+++ll + s  +   + + ++n+ +   + + +dr ++l+l +++ ++g +v+++   a + +   + ++ i++D +q m + +k++      e++ i+  + + +A E +v v ++    ++ e+    +  +s   +s +  q ad +++i  ++
  MMETSP1061-20121228|7083_1  74 DAKDANDALLKGTVDMARCIdQAKLMPHDRIVTFADLRNDVLKELLEPELYSG---TPVTSLPKFTQLIKGFRRGEMTVLTGPTGCGKTTFLGQVSLDMA-EQGENVLWGSFEIKNTRLLHKLLKQFSRDSLP-I-STDANARE--FFEALADRFENLPLyFMKFHGGSDVDEV-LDAMEYAVYVNDVEHIILDNMQFMITRHKQKTAwdkFEVQDIAiEKFRKFATEHNVHVTLVVHPRKEDET---SKLSISSFFGSAKATQEADTVIIIQNDA 337
                 55556655544444444444366666677789999999999988766544344...234889*************************************9.*************************9964443.3.33444444..355668999*****78888999999997.57889999999*************99733332223378999974689***********999865444333...3456677778888888888887776554 PP

>> TIGR00665  DnaB: replicative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0     1e-10   1.9e-08     180     430 ..     130     368 ..      82     372 .. 0.75

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1e-10
   TIGR00665 180 tgfydLDkltsGlqrsdLiivAgRPsmGKtafalniaeniakkeklpvavFSLEmskeqLvqrllaseaeveserlrtgrlseeeweklseaigelselplyidd.tpnitvtelrskarrLkaekgelglvviDYLqLmegsg..sednRvqelskis.rsLKgLArelnvPviALsQLsRsvEaRtdkrPmlsDLReSGsiEQDADlvlflyrdeyynkdsedkgiaeviiaKhR.nGptgtvkllFekeftkF 430
                 t + ++ +l++G++r+++ ++ g  + GKt+f  ++   +a++ +++v+  S+E++++ L+++ll + ++ +s  + t    +e +e l   ++++++lply    + +  v e+   +      ++ ++ +++D +q m +++  ++   + e+ +i+  + +++A e nv v  +    R+ E+ t k   +s    S    Q AD v+++  d         +    + + K+R +G  g   + F+++  ++
  MMETSP1061-20121228|7083_1 130 TSLPKFTQLIKGFRRGEMTVLTGPTGCGKTTFLGQVSLDMAEQ-GENVLWGSFEIKNTRLLHKLLKQFSR-DSLPISTDANAREFFEAL---ADRFENLPLYFMKfHGGSDVDEVLDAMEYAVYVND-VEHIILDNMQFMITRHkqKTAWDKFEVQDIAiEKFRKFATEHNVHVTLVV-HPRK-EDETSK-LSISSFFGSAKATQEADTVIIIQNDANR------R--KYLDVKKNRfDGTLGYTPIYFQNRSGRY 368
                 77889999****************************9999985.667******************98887.666666665555555555...56677889987662567788888877777666666.************76662233456779999984689*********996554.3444.444444.4678888999999999999999777522......2..2355677776677777777777777766 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   5.3e-06   0.00099      29      66 ..     143     179 ..     137     198 .. 0.81
   2 ?   -1.1   0.0       1.4   2.5e+02     173     201 ..     274     303 ..     263     310 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.3e-06
   TIGR02982  29 epgeiviltGpsGsGkttlltligglrsvqeGelkvlg 66 
                 + ge+ +ltGp+G+Gktt+l  + +l  + +Ge  ++g
  MMETSP1061-20121228|7083_1 143 RRGEMTVLTGPTGCGKTTFLGQV-SLDMAEQGENVLWG 179
                 579*****************987.46666667666665 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 1.4
   TIGR02982 173 dkksgrev.vellqklareqgttillvthd 201
                 dk   +++ +e ++k a e+++ + lv h 
  MMETSP1061-20121228|7083_1 274 DKFEVQDIaIEKFRKFATEHNVHVTLVVHP 303
                 555555543788999**********99995 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   3.1e-06   0.00059      28      60 ..     143     174 ..     133     187 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.1e-06
   TIGR03265  28 kkgelvclLGPsGCGkttLLriiaGLekqdaGa 60 
                 ++ge+  l GP GCGktt+L  ++ L+ +++G+
  MMETSP1061-20121228|7083_1 143 RRGEMTVLTGPTGCGKTTFLGQVS-LDMAEQGE 174
                 68******************9886.88888886 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   5.4e-06     0.001      21      76 ..     142     199 ..     134     203 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 5.4e-06
   TIGR03608  21 iekGelvaivGesGsGKstlLnilgllekkdsgkvilegk...ekaklkskkaskllre 76 
                 + +Ge++ ++G  G+GK+t+L  ++ l+  ++g+ +l g+   ++++l +k  +++ r+
  MMETSP1061-20121228|7083_1 142 FRRGEMTVLTGPTGCGKTTFLGQVS-LDMAEQGENVLWGSfeiKNTRLLHKLLKQFSRD 199
                 789******************9986.677777777776551114455556666666666 PP

>> TIGR03880  KaiC_arch_3: KaiC domain protein, AF_0351 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.3e-06   0.00098      11      65 ..     140     194 ..     133     201 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 5.3e-06
   TIGR03880  11 GGliegsvivviGeaGtGkttlslqflyeGLknGekalyisleereeeilgsaks 65 
                  G+ +g+++v+ G +G Gktt+  q   +   +Ge++l+ s+e ++ ++l+++ +
  MMETSP1061-20121228|7083_1 140 KGFRRGEMTVLTGPTGCGKTTFLGQVSLDMAEQGENVLWGSFEIKNTRLLHKLLK 194
                 4899******************************************999988765 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.6e-05    0.0029      24      48 ..     142     166 ..     134     194 .. 0.81
   2 ?   -1.9   0.1         2   3.8e+02      96     135 ..     254     296 ..     249     309 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-05
   TIGR00972  24 ikknkvtaliGpsGcGkstllrsln 48 
                 +++ ++t+l Gp+GcGk+t+l  + 
  MMETSP1061-20121228|7083_1 142 FRRGEMTVLTGPTGCGKTTFLGQVS 166
                 67899***************97654 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 2
   TIGR00972  96 msiydnvayglrlkgik...dkkeldeiveesLkkaalwdevk 135
                   i+dn+ + +  ++ k   dk e+++i+ e+ +k a   +v+
  MMETSP1061-20121228|7083_1 254 HIILDNMQFMITRHKQKtawDKFEVQDIAIEKFRKFATEHNVH 296
                 5688999998766654422268888888888888877776665 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.6e-05     0.003      25      72 ..     142     191 ..     135     210 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.6e-05
   TIGR02315  25 ikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklk..kk 72 
                 +++Ge++++ G+ G Gk+t+l +++  + ++  ++l    e+++++  +k
  MMETSP1061-20121228|7083_1 142 FRRGEMTVLTGPTGCGKTTFLGQVSLDMAEQGENVLWGSFEIKNTRllHK 191
                 689*******************9986666666677777778887775344 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.5e-05    0.0027      15      60 ..     142     187 ..     134     220 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.5e-05
   TIGR01166  15 vergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysr 60 
                 ++rge+++l G+ G+Gk+t+l +++  +  +  +vl++  e++  r
  MMETSP1061-20121228|7083_1 142 FRRGEMTVLTGPTGCGKTTFLGQVSLDMAEQGENVLWGSFEIKNTR 187
                 789**********************999999999999988887665 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.7e-05    0.0051      90     263 ..     141     352 ..     131     366 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.7e-05
   TIGR00416  90 GivkGsliliGGdPGiGkstlllqvaaqlaknskkvlyvsgeeslqqvklrasrlglved............................elkllsetnleqilaeiee....lkpkvvvidsiqtlyladissaPGsvsqvreitae.lmrlaktrdiaifivGhvtkeG........siaGPkvlehlvdtvlyleGdadsefrilrsvknrfGa 263
                 G  +G + ++ G  G Gk+t+l qv+ ++a++ ++vl+ s e  ++ ++l  + l   +                              +k+    +++++l ++e      + + +++d +q + + + + +      v++i+ e + ++a  +++ + +v h  ke         s  G        dtv++++ da+++ + l   knrf  
  MMETSP1061-20121228|7083_1 141 GFRRGEMTVLTGPTGCGKTTFLGQVSLDMAEQGENVLWGSFE--IKNTRLLHKLLKQFSRdslpistdanareffealadrfenlplyFMKFHGGSDVDEVLDAMEYavyvNDVEHIILDNMQFMITRHKQKTAWDKFEVQDIAIEkFRKFATEHNVHVTLVVHPRKEDetsklsisSFFGSAKATQEADTVIIIQNDANRR-KYLDVKKNRFDG 352
                 6778999999***************************98887..45555555555533333566666799999999999999988554333334455555555555411113456688999999999999999999999999987625678999999999999998885233232224457777777889999999888765.678888999865 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.9e-05     0.011      17      68 ..     136     187 ..     131     260 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.9e-05
   TIGR01189  17 eglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqr 68 
                 ++l   +  Ge+ v++Gp G GKtt L  ++  +  +  +v + + e++++r
  MMETSP1061-20121228|7083_1 136 TQLIKGFRRGEMTVLTGPTGCGKTTFLGQVSLDMAEQGENVLWGSFEIKNTR 187
                 566667789******************9998555444446888777766665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   8.8e-05     0.016      25      57 ..     142     173 ..     130     198 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 8.8e-05
   TIGR02673  25 iekgeflfltGasGaGkttllklllgaekpsrG 57 
                 +++ge++ ltG+ G Gktt+l  +   +++++G
  MMETSP1061-20121228|7083_1 142 FRRGEMTVLTGPTGCGKTTFLGQVSL-DMAEQG 173
                 689*****************987653.334444 PP

>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1    0.0001     0.019     126     148 ..     144     166 ..     132     177 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0001
   TIGR03167 126 elklvvlgGnTGsgKtelLekla 148
                 + +++vl+G TG+gKt++L +++
  MMETSP1061-20121228|7083_1 144 RGEMTVLTGPTGCGKTTFLGQVS 166
                 45899**************9865 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00083      0.16       8      45 ..     141     178 ..     136     199 .. 0.90
   2 ?    1.2   0.1      0.34        63      78     102 ..     275     301 ..     239     336 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00083
   TIGR02237   8 gvergiitqiyGpggsGKtnialilaveaaekgkkvvy 45 
                 g  rg +t + Gp+g GKt++  +++++ ae+g++v++
  MMETSP1061-20121228|7083_1 141 GFRRGEMTVLTGPTGCGKTTFLGQVSLDMAEQGENVLW 178
                 6789999***************************9976 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.34
   TIGR02237  78 dldeqekaiqkasklieke..kadlvv 102
                 +++ q+ ai+k+ k+++++  ++ lvv
  MMETSP1061-20121228|7083_1 275 KFEVQDIAIEKFRKFATEHnvHVTLVV 301
                 588899999999999999844455554 PP

>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   0.00014     0.026      20      51 ..     142     174 ..     129     180 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00014
   TIGR00634  20 ferg.ltvltGETGaGKsividalelllGqrad 51 
                 f rg +tvltG TG GK+  ++ ++l + ++++
  MMETSP1061-20121228|7083_1 142 FRRGeMTVLTGPTGCGKTTFLGQVSLDMAEQGE 174
                 666559******************999988876 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1     9e-05     0.017     195     217 ..     142     164 ..     131     176 .. 0.78
   2 ?   -2.7   0.1       5.5     1e+03      97     123 ..     379     405 ..     362     413 .. 0.49

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9e-05
   TIGR03499 195 lekggviaLvGptGvGKTTTlAK 217
                  ++g + +L GptG GKTT l  
  MMETSP1061-20121228|7083_1 142 FRRGEMTVLTGPTGCGKTTFLGQ 164
                 5678899************7765 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 5.5
   TIGR03499  97 eaaqeaekkleeaeeelrkelkalkel 123
                 +++q++ +++e+++++   e k+lk++
  MMETSP1061-20121228|7083_1 379 PPQQQQLTPMEAKKDDKTPEAKDLKSH 405
                 233333333333334444444444444 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00019     0.035      26      59 ..     143     175 ..     134     197 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00019
   TIGR03411  26 eegelrviiGpnGaGkttllDvitGktrpdeGsv 59 
                 ++ge+ v+ Gp G Gktt+l  ++  + +++G+ 
  MMETSP1061-20121228|7083_1 143 RRGEMTVLTGPTGCGKTTFLGQVSLDM-AEQGEN 175
                 689*****************9887665.444543 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00073      0.14      73     111 ..     139     177 ..      89     182 .. 0.76
   2 ?    0.3   0.3      0.37        69       4      86 ..     237     319 ..     234     334 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00073
   TIGR00064  73 lkeekkpnvillvGvNGvGKTttiaKlakllkkegkkvl 111
                 +k  ++  + +l+G  G GKTt ++ ++  ++++g++vl
  MMETSP1061-20121228|7083_1 139 IKGFRRGEMTVLTGPTGCGKTTFLGQVSLDMAEQGENVL 177
                 445566778899************************998 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.37
   TIGR00064   4 eevleeLeevLleaDvglevvekiieelkkelkekkvkeeeklkellkeelkealkeileketklel.kelkeekkpnvillvG 86 
                 +evl+ +e +    Dv+  + +++   ++   k+k+  ++ +++++  e++++  +e++ + t +   ++++e++k+ +  ++G
  MMETSP1061-20121228|7083_1 237 DEVLDAMEYAVYVNDVEHIILDNMQFMITR-HKQKTAWDKFEVQDIAIEKFRKFATEHNVHVTLVVHpRKEDETSKLSISSFFG 319
                 666667777777777776666665554444.44455555566667777777777776544444333356666667777766665 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015     0.028     341     379 ..     138     176 ..     117     197 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00015
   TIGR02857 341 vsltvepgelvalvGaSGaGKstllklllgfvepteGai 379
                 +   ++ ge+++l+G+ G+GK+t l  ++  +  +++++
  MMETSP1061-20121228|7083_1 138 LIKGFRRGEMTVLTGPTGCGKTTFLGQVSLDMAEQGENV 176
                 5556789*****************987765554344444 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0    0.0002     0.037      26      56 ..     142     171 ..     123     195 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0002
   TIGR00960  26 iekGelvflvGhsGaGkstllklilgiekps 56 
                   +Ge++ l+G++G+Gk+t+l  ++    + 
  MMETSP1061-20121228|7083_1 142 FRRGEMTVLTGPTGCGKTTFLGQVSLDM-AE 171
                 578******************8765433.33 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00048      0.09      29      75 ..     135     182 ..     122     202 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00048
   TIGR03420  29 lrel.aeakaerllylwGesgsGksHLLqAacaaaeeagksaiylplk 75 
                 +++l    ++++++ l G++g+Gk+  L  ++ +++e+g+++++ +++
  MMETSP1061-20121228|7083_1 135 FTQLiKGFRRGEMTVLTGPTGCGKTTFLGQVSLDMAEQGENVLWGSFE 182
                 45554666888999**************************99886655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00028     0.053     359     380 ..     143     164 ..     131     193 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00028
   TIGR02868 359 epGervavvGasGaGKstLlal 380
                 + Ge + ++G++G+GK+t l  
  MMETSP1061-20121228|7083_1 143 RRGEMTVLTGPTGCGKTTFLGQ 164
                 6899**************9864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                      257  (0.0626524); expected 82.0 (0.02)
Passed Vit filter:                        94  (0.0229157); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.62
# Mc/sec: 889.86
//
Query:       MMETSP1061-20121228|7089_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1410.92
//
Query:       MMETSP1061-20121228|7090_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.7   0.0      0.053   10.9   0.0    1.5  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      0.037   10.8   9.4      0.049   10.4   6.5    1.2  1  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.6e-05     0.053      24      62 ..      42      80 ..      30     106 .. 0.76
   2 ?   -3.5   0.0      0.66   1.4e+03     162     177 ..     126     141 ..     117     146 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.6e-05
   TIGR02521 24 kkdrekaakirvqLaleYleqgdlekAkenlekAleldp 62
                + + +++++  +  al+Yle g++++  e+l++Al   +
  MMETSP1061-20121228|7090_1 42 DASLSERSARLLSIALGYLETGETRETIEQLKDALDNGT 80
                44555666666899*********************8765 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.66
   TIGR02521 162 lkidpkrpesllelae 177
                 ++ + +rp+s+ ela 
  MMETSP1061-20121228|7090_1 126 TQTRHDRPRSNSELAA 141
                 5566677777777764 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   6.5   2.4e-05     0.049      16      61 ..       3      47 ..       1      75 [. 0.61

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.4e-05
   TIGR01622 16 eadrdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrd 61
                ++d d ++d++ +++Rd+++d +++r+++ ++ ++  d d    ++
  MMETSP1061-20121228|7090_1  3 DSDGDGDSDRDTHKDRDKDKDNDSDRDRDTNK-HNTIDNDDASLSE 47
                45555666666666666666666655554444.4444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 1273.69
//
Query:       MMETSP1061-20121228|7091_1  [L=1397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.15s 00:00:00.75 Elapsed: 00:00:00.61
# Mc/sec: 3022.77
//
Query:       MMETSP1061-20121228|7098_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1775.03
//
Query:       MMETSP1061-20121228|7100_1  [L=1119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.30
# Mc/sec: 4923.19
//
Query:       MMETSP1061-20121228|7104_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 2213.36
//
Query:       MMETSP1061-20121228|7101_1  [L=992]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (992 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 3117.46
//
Query:       MMETSP1061-20121228|7102_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-14   49.3   0.0    9.8e-10   35.6   0.0    2.9  2  TIGR01179 galE: UDP-glucose 4-epimerase
    2.1e-12   44.6   0.1    1.5e-05   22.0   0.0    2.9  2  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    2.5e-07   28.0   0.0    0.00021   18.4   0.0    2.1  2  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    3.7e-07   27.3   0.7    0.00015   18.8   0.1    2.7  3  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    0.00066   16.7   0.1     0.0055   13.7   0.1    2.0  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
     0.0024   15.3   0.0      0.072   10.5   0.0    2.5  3  TIGR01777 yfcH: TIGR01777 family protein
     0.0035   14.0   0.0     0.0052   13.4   0.0    1.2  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0   1.7e-12   9.8e-10       1     127 [.      49     198 ..      49     208 .. 0.76
   2 !    8.9   0.0   0.00022      0.13     222     294 ..     309     381 ..     288     400 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 1.7e-12
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgs................kealkalekit..evklvegdl.adkekleavleeekidaviHfaaliavgEsvkeP.lkYY..ennvvntleLleamqkagvk.kliFsssaavYge 127
                 ki+v Gg G+ G  +   l+++g++vv++Dnls+ +                ++ + + +++t  ++ + + d+ +d   l +++++e++d+++Hfa + a + s k+  +k Y  +nnv ++ +L+ a+ +a v  +++   +  vYg 
  MMETSP1061-20121228|7102_1  49 KIIVLGGDGFCGWPTSLYLSDQGHDVVIVDNLSRRKidldlgcdsltpiaspETRVATWKEVTgkDIPFHNLDVaKDYDLLVQLIKDEQPDSIVHFAEQRAAPYSQKNSkTKRYtvDNNVGGSNNLCCAVIDADVDaHIVHLGTMGVYGY 198
                 699*****************************986511111111111111112345555556588999**999945889999********************9998765234442479***********999999626888999999996 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00022
   TIGR01179 222 GtcvRDyiHveDlaeaHlaalealeeg.gesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpasl 294
                 G   R +iHv+D a     a++   e+ + +e++n    +   v+++ e v  ++g++ ++  ++r +    +l
  MMETSP1061-20121228|7102_1 309 GGQTRAFIHVTDTARCIELAINNPPEKgERVEILNQ-IAETRRVRDIAEMVAGMTGVEANFIPNPRQEAAENEL 381
                 45579***************9987665277899997.567889**************99999988887665555 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.1   1.8e-07   0.00011      42     134 ..     106     201 ..      49     258 .. 0.72
   2 !   22.0   0.0   2.6e-08   1.5e-05     194     258 ..     292     359 ..     284     406 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.8e-07
   TIGR01181  42 nlkdledeerysfvkgdia.drelverllkeedvdavvnfaaeshvDrsi...sepeafietnvvGtytlleavrkelkevrllhistDevyGdlek 134
                 + k+++  + + f + d+a d++l+ +l+k+e++d +v+fa +     s    +     ++ nv G   l  av +   + +++h+ t  vyG  ++
  MMETSP1061-20121228|7102_1 106 TWKEVTG-KDIPFHNLDVAkDYDLLVQLIKDEQPDSIVHFAEQRAAPYSQknsKTKRYTVDNNVGGSNNLCCAVIDADVDAHIVHLGTMGVYGYGTS 201
                 3444444.678899999965899******************7766555540004455678999*************999*************96554 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 2.6e-08
   TIGR01181 194 llitnalagkklpvyGdGqqvrDwlyveDhcraielvlek.grvgevynigge..eertnlevvkiil 258
                 ++ ++  +g +l+vyG+G q r +++v+D++r iel +++  ++ge  +i  +  e r++ ++ +++ 
  MMETSP1061-20121228|7102_1 292 RFLMQGAMGVPLTVYGTGGQTRAFIHVTDTARCIELAINNpPEKGERVEILNQiaETRRVRDIAEMVA 359
                 56677889**************************9988642355555555444113345566666665 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.5e-07   0.00021       1     122 [.      50     200 ..      50     210 .. 0.78
   2 !    7.5   0.0   0.00075      0.44     207     274 ..     306     374 ..     302     381 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.5e-07
   TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrk.....................gekllnlkdeei....adyidkeellerlekeelkkveavfH.....egAisdTteldgellmenNyeyskellelcaeke..vkliYASSAavYGdse 122
                 iiv Gg Gf G     +l ++g +d+++vD+l++                      + ++++++++i     d  ++ +ll +l k   ++ + ++H      +  s+     +++ ++nN+  s++l  + ++ +  ++++     +vYG ++
  MMETSP1061-20121228|7102_1  50 IIVLGGDGFCGWPTSLYLSDQG-HDVVIVDNLSRrkidldlgcdsltpiaspetrVATWKEVTGKDIpfhnLDVAKDYDLLVQLIK--DEQPDSIVHfaeqrAAPYSQKNSKTKRYTVDNNVGGSNNLCCAVIDADvdAHIVHLGTMGVYGYGT 200
                 89******************99.8*********99***************997655599999999985222244444455555555..589999999444312336888889999************998777655115678888888888665 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00075
   TIGR02197 207 lkdGeqlRDFvyvkDvvkvnllllekkeksG....ifnvGtgkarsfndlaaavvkalgkdekieyidmPea 274
                 +  G+q+R F++v D ++++ l+++++ + G    i n   +++r  +d+a++v  ++g   + ++i++P +
  MMETSP1061-20121228|7102_1 306 YGTGGQTRAFIHVTDTARCIELAINNPPEKGerveILNQ-IAETRRVRDIAEMVAGMTGV--EANFIPNPRQ 374
                 5679*********************99888866556664.67889999999999888885..4589999876 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.75   4.4e+02       1      26 [.      50      75 ..      50      79 .. 0.86
   2 !   18.8   0.1   2.6e-07   0.00015      59     127 ..     124     198 ..     104     251 .. 0.81
   3 !    6.0   0.0    0.0019       1.1     199     265 ..     303     371 ..     282     388 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.75
   TIGR04180  1 vlvtGadGfiGshlvealvekGaevr 26
                ++v G dGf G      l ++G++v 
  MMETSP1061-20121228|7102_1 50 IIVLGGDGFCGWPTSLYLSDQGHDVV 75
                6899*******999999999998885 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.6e-07
   TIGR04180  59 rdaesvkkavkgv..dvvfhlaaliaiPysyvapes..y.vetnvkGtlnvlqaardleve.kvvhtstsevyGt 127
                 +d++ + + +k+   d ++h+a   a Pys + +++  y v+ nv G+ n++ a  d++v+ ++vh  t  vyG 
  MMETSP1061-20121228|7102_1 124 KDYDLLVQLIKDEqpDSIVHFAEQRAAPYSQKNSKTkrYtVDNNVGGSNNLCCAVIDADVDaHIVHLGTMGVYGY 198
                 67777778777643389*************98765433559*******************64799*******995 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0019
   TIGR04180 199 kiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigsnf.e.isigdtvkliaeilgkeveivtd 265
                     G+   tr f +v+dt++ +    + +   Ge ++i ++  e   + d+++++a + g+e +++ +
  MMETSP1061-20121228|7102_1 303 LTVYGTGGQTRAFIHVTDTARCIELAINNPPEKGERVEILNQIaEtRRVRDIAEMVAGMTGVEANFIPN 371
                 555677778**************9999999999****99887523146999999999999999887655 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   9.5e-06    0.0055       4     133 ..      47     196 ..      45     219 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.5e-06
   TIGR02622   4 gkkvlvtGhtGfkGsWlslwLkelGaevaGysldpetkpnl...fellklakklkd..............ssvlgdi.rdaeklekaieevkPeivfhlaaqplvrksY...kdPletfetnvlGtvnlleavralesvkavvlvtsDkvY 133
                 +kk++v G  Gf G   sl+L+++G +v+      + k +l   ++ l+   + ++                +  d+ +d++ l ++i++ +P+ + h+a q     s    k+   t + nv G+ nl  av   +    +v + +  vY
  MMETSP1061-20121228|7102_1  47 KKKIIVLGGDGFCGWPTSLYLSDQGHDVVIVDNLSRRKIDLdlgCDSLTPIASPETrvatwkevtgkdipF-HNLDVaKDYDLLVQLIKDEQPDSIVHFAEQRAAPYSQknsKTKRYTVDNNVGGSNNLCCAVIDADVDAHIVHLGTMGVY 196
                 78999999999999889999999999886543333222222111222222111111222344333333322.3334438999******************886665555000556778999*******99999999988888888877777 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.049        29       1      29 [.      50      78 ..      50     102 .. 0.87
   2 ?   -2.5   0.0       1.1   6.6e+02      56     117 ..     136     197 ..     121     202 .. 0.66
   3 !   10.5   0.0   0.00012     0.072     188     218 ..     306     336 ..     284     363 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.049
   TIGR01777  1 vlitGgtGliGralveelekkghevvilt 29
                +++ Gg G+ G      l+++gh+vvi+ 
  MMETSP1061-20121228|7102_1 50 IIVLGGDGFCGWPTSLYLSDQGHDVVIVD 78
                6899*********************9975 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.1
   TIGR01777  56 egvdavinLaGepiad.krwteerkkeileSRikttealvelikkakqkpkvlisasavgyYg 117
                 e+ d +++ a +  a   + ++++k+  ++  +  ++ l  ++ +a+     ++   ++g+Yg
  MMETSP1061-20121228|7102_1 136 EQPDSIVHFAEQRAAPySQKNSKTKRYTVDNNVGGSNNLCCAVIDADVDA-HIVHLGTMGVYG 197
                 55566677776666543444666777777777888888877777777443.667777777776 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00012
   TIGR01777 188 lGsGrqwlsWihleDlvklilfaleneevsG 218
                  G+G q   +ih+ D+++ i+ a++n+  +G
  MMETSP1061-20121228|7102_1 306 YGTGGQTRAFIHVTDTARCIELAINNPPEKG 336
                 5************************998777 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   8.8e-06    0.0052       3      34 ..      50      82 ..      48     102 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8.8e-06
   TIGR03026  3 iavv.GlGYvGlplaallaekgheVvgvDidke 34
                i v+ G G+ G p+++ l+++gh+Vv vD  ++
  MMETSP1061-20121228|7102_1 50 IIVLgGDGFCGWPTSLYLSDQGHDVVIVDNLSR 82
                5555268**********************7554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.25
# Mc/sec: 2402.20
//
Query:       MMETSP1061-20121228|7105_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1927.84
//
Query:       MMETSP1061-20121228|7107_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1748.86
//
Query:       MMETSP1061-20121228|7110_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 553.10
//
Query:       MMETSP1061-20121228|7113_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.9   0.6      0.021   12.7   0.4    1.0  1  TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B
      0.023   12.1   0.0      0.024   12.0   0.0    1.0  1  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR02951  DMSO_dmsB: dimethylsulfoxide reductase, chain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.4     1e-05     0.021      86     135 ..       6      54 ..       2      58 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1e-05
   TIGR02951  86 edGlvlvdqdkciGckycalacpygapqyeeekgkvskcdlcvdrlekge 135
                 +dG    ++++ + c +c +    +    ++++++v +c +c++  ++g 
  MMETSP1061-20121228|7113_1   6 DDGNDDGNDNDFVACYTCLWEAVAS-TAAKRNTKTVVRCPICYQETSQGS 54 
                 6777778999**********98655.45577888999******9999886 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.2e-05     0.024     127     161 ..       9      42 ..       2      54 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.2e-05
   TIGR01777 127 eeeeagddFlaklceeWEeaaqaaeklgvrvvllR 161
                 +++++++dF+a  +  WE++a++a k ++++v+ R
  MMETSP1061-20121228|7113_1   9 NDDGNDNDFVACYTCLWEAVASTAAKRNTKTVV-R 42 
                 44678899******************9*99985.5 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 432.63
//
Query:       MMETSP1061-20121228|7116_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 981.31
//
Query:       MMETSP1061-20121228|7119_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 851.93
//
Query:       MMETSP1061-20121228|7115_1  [L=1326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-16   56.6   0.1    1.8e-15   54.7   0.1    1.9  2  TIGR00417 speE: spermidine synthase


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0      0.32   1.3e+03     116     156 ..     128     172 ..     123     175 .. 0.73
   2 !   54.7   0.1   4.4e-19   1.8e-15      24     188 ..     408     577 ..     404     627 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.32
   TIGR00417 116 lpklsgalddervdlkidDGv...kflrdtekkf.DviivDstdP 156
                 lp   ++l +e +d+++ DG+   +fl++  + f   i++D  +P
  MMETSP1061-20121228|7115_1 128 LPAAWSELGKELLDMIVGDGLypqRFLHHNVEDFcPLIVSDQENP 172
                 777778889999999999996444688877666625777787777 PP

  == domain 2    score: 54.7 bits;  conditional E-value: 4.4e-19
   TIGR00417  24 ksefqdvlifeteefGk.vlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpklsgalddervdlkidDGvkflrdt....ekkfDviivDstdPvGpaetlfeke.fyelvkkalnedGvivaqses 188
                 +s++q+++   ++e+ +  l l g +qt  +  + yhe  +hvp    e+ k+v+ +GGGD  +l e++k+ + e ++ +e+D++vi+ + k l +l   +dd rv+    D  k l         +fD ++vD    v  a ++ +k    +++   ++++G ++a++e 
  MMETSP1061-20121228|7115_1 408 RSQYQEIEFTYNKEVDNtCLHLSGWLQTCTNFRPHYHEAFVHVPAQYVEDVKRVAFLGGGDNMILHEILKYPNLELVVGMELDQQVIRSAFKNLGTL-PYFDDHRVHWWFGDATKSLFALpesyFGTFDLVLVDLQTFVADALKVTDKLtIMDTAMLLMKPEGGVIAKNED 577
                 899*****9988888652799***********************************************************************99987.58*************998866533336789******9888777777666641344444455666656665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.14s 00:00:00.73 Elapsed: 00:00:00.48
# Mc/sec: 3646.20
//
Query:       MMETSP1061-20121228|7114_1  [L=1088]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1088 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.45
# Mc/sec: 3191.20
//
Query:       MMETSP1061-20121228|7120_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-26   91.3   0.0      2e-26   90.5   0.0    1.4  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    5.8e-14   49.7   0.0    1.1e-13   48.8   0.0    1.3  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    5.7e-10   36.3   0.0    5.6e-09   33.1   0.0    2.0  2  TIGR01179 galE: UDP-glucose 4-epimerase
    6.8e-06   23.4   0.0    0.00091   16.4   0.0    2.2  2  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.5   0.0     2e-29     2e-26       3     233 ..      77     326 ..      75     352 .. 0.83
   2 ?   -3.6   0.0      0.81   8.3e+02     297     318 ..     365     386 ..     360     393 .. 0.76

  Alignments for each domain:
  == domain 1    score: 90.5 bits;  conditional E-value: 2e-29
   TIGR03466   3 vlvtGatGFvGsavvrllleeG.eevrvlvrkt.sdrrnleel.........dvEiveGdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvytssvatl...gvkedgkeadettpsklekmiG..hYkrskflAEqaveelaae..glpvvivnPstPiGprDikptPtgriivdalkrkmPayvdtgLnl.vdvddvaegHllAlerGriGerYiLGgenl 233
                 v +tG  GF+G +v  + l++G ++vr+ vrk+ sd+  ++++         d +ive +l de+s+ +a+ G +++ H+A  y l  k+++el+   v+gt + l+a ++ gver+v+tss a++   gv+  ++  de+  s+ ++  G  +Y  sk+lAE+a+ +  +e  +l+vv + P+  +Gp   +p   ++  ++ + ++    + +  n   dv+dva++H++A+e     ++ iL + + 
  MMETSP1061-20121228|7120_1  77 VTITGLDGFLGPHVGLEFLKSGnYRVRATVRKNySDKDKMNAIkeaygehyqDLDIVEAELLDEDSMMQAIDGSTYVAHLASPYYLDNKTRDELVGPAVQGTLSALKACTNSGVERCVFTSSYACIrwtGVEDTPRVYDESVWSNPDRPGGmsDYAVSKLLAEKAAWDYQKEhpELEVVSICPTLLLGPGIGRPNVVSEEFLKGILEDWKPSIKCASNYySDVRDVATAHFRAIEAPGAANQRILVHSDA 326
                 679***********98888888469***9998746666666653223333335789*********************************************************************94445677889999999888887655337**************9999899*******************9999988888888887789999996369*************955555556665553 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.81
   TIGR03466 297 akAereLgyrqrpaeealkdav 318
                 ++ +  Lg++ +p+e++l+d  
  MMETSP1061-20121228|7120_1 365 SRSKILLGMEYTPIEKTLQDMA 386
                 5666779999999999998865 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0     1e-16   1.1e-13       1     162 [.      77     248 ..      77     274 .. 0.73

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 1e-16
   TIGR04180   1 vlvtGadGfiGshlvealvekG.aevralvl..ynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfhlaaliaiPys..yvapesyvetnvkGtlnvlqaardlevekvvhtstsev..yGtaqyvP..idekhplq.....aqsPysaskigadqlalsfyrs 162
                 v +tG dGf+G h+  +++++G ++vra v+  y  ++++  ++e+  e  +++++v  ++ d++s+ +a+ g + v hla+    Py    ++ +  v   v+Gtl  l+a+ + +ve+ v ts+     +   +  P   de+   +     + s y+ sk+ a++ a  +++ 
  MMETSP1061-20121228|7120_1  77 VTITGLDGFLGPHVGLEFLKSGnYRVRATVRknYSDKDKMNAIKEAYGEHYQDLDIVEAELLDEDSMMQAIDGSTYVAHLAS----PYYldNKTRDELVGPAVQGTLSALKACTNSGVERCVFTSSYACirWTGVEDTPrvYDESVWSNpdrpgGMSDYAVSKLLAEKAAWDYQKE 248
                 579***********98888887579****97235567788999999999*******************************98....664114677899**************************9744311222233332123332222111113466777777777777777665 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   5.5e-12   5.6e-09       2     170 ..      77     256 ..      76     258 .. 0.76
   2 ?    0.8   0.0     0.035        36     228     246 ..     296     314 ..     291     326 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 5.5e-12
   TIGR01179   2 iLvtGgaGyiGshvvrqllekgke...vvvlDnlskg.skealk..alekitevklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavY...gesekv.pisEesplnpinp.....YGrsklmvErilkdlkkadkelkvvi 170
                 + +tG  G++G hv  ++l++g       v  n s+  + +a+k  ++e+++++ +ve++l d+ ++ ++++ ++   v H+a+  +  + +++ l      v++tl+ l+a+++ gv++ +F ss a     g +++  ++ E+   np  p     Y  skl +E+   d++k ++el+vv+
  MMETSP1061-20121228|7120_1  77 VTITGLDGFLGPHVGLEFLKSGNYrvrATVRKNYSDKdKMNAIKeaYGEHYQDLDIVEAELLDEDSMMQAIDGST--YVAHLASPYYLDNKTRDEL--VGPAVQGTLSALKACTNSGVERCVFTSSYACIrwtGVEDTPrVYDESVWSNPDRPggmsdYAVSKLLAEKAAWDYQKEHPELEVVS 256
                 679*****************99753335688999865155677622467888***************99998765..588*********9999865..6889*********************9986653222444443146677777776662222266778888888888888888888775 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.035
   TIGR01179 228 yiHveDlaeaHlaaleale 246
                 y  v D+a aH++a+ea  
  MMETSP1061-20121228|7120_1 296 YSDVRDVATAHFRAIEAPG 314
                 6789**********99755 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.9   0.0    0.0027       2.8       2      48 ..      77     123 ..      76     137 .. 0.84
   2 !   16.4   0.0   8.9e-07   0.00091     106     190 ..     168     255 ..     155     339 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0027
   TIGR01746   2 vlLTGAtGfLGaylleeLlrrsteakviClVR.akseehaleRLreal 48 
                 v +TG  GfLG +   e l++  + +v + VR   s+++ ++ ++ea 
  MMETSP1061-20121228|7120_1  77 VTITGLDGFLGPHVGLEFLKSG-NYRVRATVRkNYSDKDKMNAIKEAY 123
                 668******************6.99*******6667777777777765 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 8.9e-07
   TIGR01746 106 eeLraaNVegtvevlrlaasgkakpliyvStlsvlaaielsakvevddatetkkpglatG...YaqSKwvaEllvreasdrglpvtiv 190
                 +eL ++ V+gt  +l+ ++++     ++ S+ +   ++ +  + +v d+++ ++p+  +G   Ya SK +aE+     ++++ ++ +v
  MMETSP1061-20121228|7120_1 168 DELVGPAVQGTLSALKACTNSGVERCVFTSSYACIRWTGVEDTPRVYDESVWSNPDRPGGmsdYAVSKLLAEKAAWDYQKEHPELEVV 255
                 78999********************************99888999999999998888886666**********988888875555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|7122_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 534.90
//
Query:       MMETSP1061-20121228|7123_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 929.92
//
Query:       MMETSP1061-20121228|7121_1  [L=892]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (892 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 3797.88
//
Query:       MMETSP1061-20121228|7125_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-15   54.3   0.0    2.6e-15   53.8   0.0    1.2  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
    0.00038   17.0   0.0    0.00055   16.5   0.0    1.1  1  TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit
    0.00074   15.3   0.0    0.00099   14.9   0.0    1.1  1  TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
  ------ inclusion threshold ------
      0.016   12.3   0.0      0.025   11.7   0.0    1.2  1  TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase
      0.019   12.1   0.0      0.031   11.5   0.0    1.2  1  TIGR03018 pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase


Domain annotation for each model (and alignments):
>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   3.1e-18   2.6e-15     411     573 ..     180     344 ..      98     360 .. 0.73

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 3.1e-18
   TIGR00204 411 raGivGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrGn.avgveltee..ekleiGksellrkgedilllgfGtlveealev.aeelkekgieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsdqn 573
                   G vG  G+ h      ++l +iP + +++P+   ++k +l  +++ + +p+ +  P+    + ve ++    ++e+Gk+e++r+g di +lg+G  +    e+   +++++gi++ ++dl+ + P d + + + ++++ klv+ +e+ +  G+g+ v+  l+ + 
  MMETSP1061-20121228|7125_1 180 PCGAVGHGGHYHSQSP-EAFLAHIPGIAVVMPRGPRTAKGLLLASIRSK-DPVVFLEPKALyRAAVEDVPVddYEVELGKAEVMRRGTDITVLGWGGHLRVLEEAcDLAMEKDGISCELIDLQTIVPWDVDCVAESVRKTGKLVVSHEAPVSSGFGAEVVATLQREC 344
                 3689999999997665.59*********************999988877.79999999874245566555545789********************99887766514678899*********************************************999887764 PP

>> TIGR03710  OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   6.7e-07   0.00055     457     519 ..     259     322 ..     248     332 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 6.7e-07
   TIGR03710 457 evegdedadvlvigwGstkgaikeaver.lreeglkvallhlrllnPlpke.laellekakkvvv 519
                 ev   +  d++v+gwG+    ++ea++  ++++g++++l+ l+ + P   + +ae ++k  k+vv
  MMETSP1061-20121228|7125_1 259 EVMR-RGTDITVLGWGGHLRVLEEACDLaMEKDGISCELIDLQTIVPWDVDcVAESVRKTGKLVV 322
                 5554.4789*****************9626788**********************9999988876 PP

>> TIGR00239  2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.2e-06   0.00099     639     781 ..     101     241 ..      90     253 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.2e-06
   TIGR00239 639 lshlsnekasfevadsvlseesvlafeyGyavtsPetlvlWeaqfGdfanaa..qvv..idqfissGeqkWgrksGlvlllPhGyeGqGPehssarlerflqlaaednlqvvvpttpaqvfhilrrqalrelrrPlvvlspksllrh 781
                  + l+++ +  +v++++lse+++ ++  Gy+  s  t  + e qf d+   a  q+v  + +f     ++W+   G+ l  P G  G G  + s   e fl  a    + vv+p  p     +l   + r  + P+v l pk l r 
  MMETSP1061-20121228|7125_1 101 TQGLQDKFGPDRVFNTPLSENGIAGLAIGYSSMSGGT-AIGEIQFADYIFPAfdQIVneMSKFRYRSGNQWN-CGGVTLRSPCGAVGHGGHYHSQSPEAFL--AHIPGIAVVMPRGPRTAKGLLLA-SIR-SKDPVVFLEPKALYRA 241
                 567888888889*********************9988.689******8877644776334566555555674.45777889*********99999999997..55667889998888887777753.344.5678888888888886 PP

>> TIGR01692  HIBADH: 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.1e-05     0.025      57     128 ..     267     340 ..     240     342 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.1e-05
   TIGR01692  57 itmlPagkhvesvyagdegilakvkkksllidsstidvdsarkvaeeaaakGavfl..daPvsGGvggaraGtl 128
                 it+l  g h + +  + +  ++k   +  lid  ti +     vae + ++G+ ++  +aPvs G g+    tl
  MMETSP1061-20121228|7125_1 267 ITVLGWGGHLRVLEEACDLAMEKDGISCELIDLQTIVPWDVDCVAESVRKTGKLVVshEAPVSSGFGAEVVATL 340
                 78888888888888877777788888899***********************9876448*******99877776 PP

>> TIGR03018  pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.7e-05     0.031      30      76 ..      47      93 ..      31     110 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.7e-05
   TIGR03018 30 kskknknlimvtsalsgeGksftaiNLAislaleldktvLliDadlr 76
                  ++n  + +v +++++    ftaiN A+s+ale+d   +l   d++
  MMETSP1061-20121228|7125_1 47 LDTRNARTEIVEGSVTERMNLFTAINNALSIALESDPSCILFGEDVA 93
                45566777789999999999*****************9999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.23
# Mc/sec: 2232.34
//
Query:       MMETSP1061-20121228|7127_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2204.22
//
Query:       MMETSP1061-20121228|7128_1  [L=852]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-05   20.8   5.3      0.015   11.0   0.0    2.9  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0031   15.5   1.7         11    4.3   0.0    4.9  5  TIGR00756 PPR: pentatricopeptide repeat domain
     0.0053   15.2   0.1      0.062   11.7   0.0    2.9  4  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   1.8     6e-05     0.082     498     626 ..     295     433 ..     259     442 .. 0.80
   2 !   11.0   0.0   1.1e-05     0.015     441     531 ..     628     734 ..     608     772 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 6e-05
   TIGR02917 498 ffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaek..dpkelepalaLaqyylskgelkkalail........eeaadlapdspellellgraqlaakdlkkavesfkk 626
                 +  A+a   +l + + +++  + r+e++++ + k l++l++ a+    +    + v l+++a +     ++ +  ++++ + +  gel kal++         ++++ ++p+ + ll++lg++q++ ++l++a++ ++ 
  MMETSP1061-20121228|7128_1 295 DPNARAAVSKLLARASRAEHTHFRYEYAVKCYLKALNILQKQAKYPDDHPTVVKTVHLMNNAHNVliSYNNSANIVKMGIKNEDAGELVKALKMYtiayrirrDNLSRNHPSLVVLLNMLGSIQIKRGELQEAMQIYEL 433
                 45667777777788999999*****************************9999******99965322567888999999999*********987511122222345666777778999****************99985 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 1.1e-05
   TIGR02917 441 yLrsgefdkalaaak........klekkqpdnaslynllgaiylgkkdlakAreafekALkie........pdffpAlanLArldlqekniddAkqrfekvlaidpk 531
                 y  +g+f++al a +        +l k  p+ a++   +g      +dl++A + +++ L ie        pd +  l+n A++d++ +n + + q ++kv+  ++k
  MMETSP1061-20121228|7128_1 628 YCSQGKFNRALDAYEvalrgmktALGKHHPNVAAVLGNIGNLQKEMGDLDGAYNTYQEVLGIEsyrlglshPDVAITLHNIATIDAARGNFEHSLQLYQKVIELQKK 734
                 5556666666666551111111145566677777777777777888999***********99855555555799999************************998775 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         2   2.8e+03      13      23 ..     379     389 ..     379     389 .. 0.89
   2 ?    1.4   0.0     0.067        92      12      28 ..     420     436 ..     419     440 .. 0.84
   3 ?    3.7   0.0     0.013        17      13      25 ..     488     500 ..     485     504 .. 0.86
   4 !    4.3   0.0     0.008        11       8      24 ..     626     642 ..     620     645 .. 0.87
   5 ?   -0.5   0.0      0.27   3.7e+02      13      26 ..     715     728 ..     713     731 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2
   TIGR00756  13 agrveeAlelf 23 
                 ag++ +Al+++
  MMETSP1061-20121228|7128_1 379 AGELVKALKMY 389
                 69999****98 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.067
   TIGR00756  12 kagrveeAlelfdeMke 28 
                 k+g++ eA++++++ + 
  MMETSP1061-20121228|7128_1 420 KRGELQEAMQIYELALN 436
                 89**********98665 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.013
   TIGR00756  13 agrveeAlelfde 25 
                 +g+v+eAl++f++
  MMETSP1061-20121228|7128_1 488 WGNVDEALKFFHK 500
                 8**********97 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.008
   TIGR00756   8 sglckagrveeAlelfd 24 
                 + +c +g+++ Al+ ++
  MMETSP1061-20121228|7128_1 626 RLYCSQGKFNRALDAYE 642
                 78***********9986 PP

  == domain 5    score: -0.5 bits;  conditional E-value: 0.27
   TIGR00756  13 agrveeAlelfdeM 26 
                 +g++e+ l+l+++ 
  MMETSP1061-20121228|7128_1 715 RGNFEHSLQLYQKV 728
                 79*********986 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         3   4.1e+03      55      77 ..     319     341 ..     316     343 .. 0.78
   2 ?   -2.8   0.0       1.5     2e+03      45      66 ..     414     435 ..     413     438 .. 0.73
   3 !   11.7   0.0   4.6e-05     0.062      46     103 ..     625     687 ..     621     692 .. 0.86
   4 ?   -2.6   0.0       1.3   1.7e+03      74     104 ..     700     730 ..     697     731 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 3
   TIGR02795  55 ykdAakaflevvkkypksekapd 77 
                 y+ A k +l++++  +k++k pd
  MMETSP1061-20121228|7128_1 319 YEYAVKCYLKALNILQKQAKYPD 341
                 67788888888888888888887 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.5
   TIGR02795  45 lGealyakkkykdAakaflevv 66 
                 lG  +++++++++A + ++ ++
  MMETSP1061-20121228|7128_1 414 LGSIQIKRGELQEAMQIYELAL 435
                 6778888888888888887665 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 4.6e-05
   TIGR02795  46 GealyakkkykdAakaflevvkkypk.....sekapdallklgeslqelgqkekAkktlqevi 103
                 + ++ +++k+++A +a++ +++  ++     ++ ++  l ++g++++e+g+ + A +t+qev 
  MMETSP1061-20121228|7128_1 625 ARLYCSQGKFNRALDAYEVALRGMKTalgkhHPNVAAVLGNIGNLQKEMGDLDGAYNTYQEVL 687
                 67899*************9998875322222899999999*********************95 PP

  == domain 4    score: -2.6 bits;  conditional E-value: 1.3
   TIGR02795  74 kapdallklgeslqelgqkekAkktlqevik 104
                  ++  l +++++ ++ g+ e++ + +q+vi+
  MMETSP1061-20121228|7128_1 700 DVAITLHNIATIDAARGNFEHSLQLYQKVIE 730
                 5566777888888888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 3039.32
//
Query:       MMETSP1061-20121228|7126_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-11   39.2   0.0    5.6e-11   38.8   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.9e-05   21.5   0.0    6.1e-05   20.4   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   2.7e-14   5.6e-11      83     230 ..     350     493 ..     244     507 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2.7e-14
   TIGR03903  83 rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdv 230
                   m+    ala  h++ v+hRD+   n+ +s +    + k+LDFG++ +lp  +d ++++    t   Gs  Y a e     p   k+D+Y++ +++ e L  ++v     +ae++ +    ++    s+  ++++ ++L++    d+
  MMETSP1061-20121228|7126_1 350 VAMADLASALAYLHERRVIHRDVSLGNVGISYRAG--KVKLLDFGLAKVLPPSDD-ENQRFL-LTGTTGSIRYMATEIALKQPYNLKADVYSFAMLLYEVLCLEKVFSKWHTAEIFEQVHNKQHRPRMSMFWSKQIKQLLKSCWAHDP 493
                 45889999***********************9876..579***********9999.555554.45578****************************************9999999887666665555566666666666666665555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     3e-08   6.1e-05      93     138 ..     349     396 ..     336     410 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3e-08
   TIGR03724  93 lellkevGelvgklHkagivhgDlttsNiiv..kddklyliDfGLgkk 138
                 l ++ +++ +++ lH+ +++h D+   N+ +  +++k+ l+DfGL+k+
  MMETSP1061-20121228|7126_1 349 LVAMADLASALAYLHERRVIHRDVSLGNVGIsyRAGKVKLLDFGLAKV 396
                 46788999********************98744699**********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.26
# Mc/sec: 2634.71
//
Query:       MMETSP1061-20121228|7130_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|7132_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1357.60
//
Query:       MMETSP1061-20121228|7136_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|7135_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.3   7.2       0.04   11.5   5.0    1.3  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein
      0.076   11.1   1.2       0.29    9.3   0.8    2.0  1  TIGR02230 ATPase_gene1: putative F0F1-ATPase subunit
        0.6    7.1   8.2       0.11    9.6   0.2    2.1  2  TIGR02740 TraF-like: TraF-like protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   5.0     3e-05      0.04     144     234 ..     185     270 ..     159     287 .. 0.46

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3e-05
   TIGR03354 144 eagegaaprpapqaasldPlkaldqepasaadlddgalsaelaeevae.alpadlasidaestlepelaplpaaqpapapqeqeq..aseaval 234
                 ea++ ++p+p+p++ +++P ++ ++e+  +++  d       +e ++e + + ++ ++d+ ++ +pe++p+p+++p+p+p e+ q   + a+ +
  MMETSP1061-20121228|7135_1 185 EAPPLPEPEPEPEP-EPEPEPEPESEEVATEEDAD------ESEFPSEtDSESEVVATDE-DAEDPEPEPEPEPEPEPEPAETTQstGATASSV 270
                 44444444444444.44444433333333322222......2222222122223322222.344444444444444444444444113333344 PP

>> TIGR02230  ATPase_gene1: putative F0F1-ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.8   0.00021      0.29      33      90 ..     276     343 ..     257     348 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00021
   TIGR02230  33 dadrsvwlglgmlgligwsvaiptllgval.........giwldkhypssfswt.ltllivgvvvgcl 90 
                   +rs+w   g+     w+v  p  + va+         g+wl  hy  + + + +t+l   ++v  +
  MMETSP1061-20121228|7135_1 276 TRNRSLWKAHGVCATFAWAVFAPLAIAVAVlrfwledfeGLWLKLHYGLNLATAfFTMLAFSLGVAAI 343
                 569************************99765555666677777777666554314566666666555 PP

>> TIGR02740  TraF-like: TraF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   7.7e-05      0.11      27      78 ..     165     217 ..     154     226 .. 0.76
   2 ?    0.8   1.6     0.037        51      47      74 ..     241     261 ..     229     281 .. 0.51

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 7.7e-05
   TIGR02740  27 vrvsgkefykeekkgw.fwyedpkpkeeeeklepapepaaeaaaaepakeela 78 
                 +  +++ fy+  ++++    e+p+ +e e + ep+pep++e++++e a ee a
  MMETSP1061-20121228|7135_1 165 MGSGNQLFYHARREAFgIMLEAPPLPEPEPEPEPEPEPEPEPESEEVATEEDA 217
                 56788899999999983455666666655556799999999999998888766 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.037
   TIGR02740  47 dpkpkeeeeklepapepaaeaaaaepak 74 
                 dp+p+ e+e     pep++e+a +   +
  MMETSP1061-20121228|7135_1 241 DPEPEPEPE-----PEPEPEPAET--TQ 261
                 333333333.....2222222222..22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 2226.22
//
Query:       MMETSP1061-20121228|7133_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2177.82
//
Query:       MMETSP1061-20121228|7139_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 413.97
//
Query:       MMETSP1061-20121228|7137_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 1227.90
//
Query:       MMETSP1061-20121228|7138_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 2657.38
//
Query:       MMETSP1061-20121228|7145_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 701.94
//
Query:       MMETSP1061-20121228|7146_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 972.95
//
Query:       MMETSP1061-20121228|7144_1  [L=994]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-115  384.3  17.4   1.9e-115  383.8  12.0    1.1  1  TIGR00836 amt: ammonium transporter
    4.6e-75  250.7  16.4      2e-73  245.3  11.0    2.1  2  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  383.8  12.0  9.4e-119  1.9e-115       4     404 ..      53     486 ..      50     488 .. 0.92

  Alignments for each domain:
  == domain 1    score: 383.8 bits;  conditional E-value: 9.4e-119
   TIGR00836   4 wllvaaalVflmqpGlalLeaGlvrsknvlnillknlldlavvillyvllGyslafgeeaetvngfiGtskfglknkvlkesskeelpelvfflfqlvFaaiaaaivsgavaeRikfsayllfsvllltlvyppvahwvwgtgGwlal.......klgvlDFAGstvVHlvgGvagLvaalvlGpRigrf.........eseaikphnvplvvlGtflLwfGWfgFNaGSal..aang....laalaavnTtlaaaagaltallieyl....keg..kptvlgaingilaglvaitagagvvepwaalviGvvagvlvllavsklkkklkiDDpldvfavHgvaGiwGlilvglfaaekvvasagtagss............llggnakqllvqligilvilvysfvvtliillilkkvigLRvseeeEklGlDlaehges 404
                  l+v+  ++f+mq G+a+++aG+vr knv n++lknlld++   l+++l+Gy++afg++ +t +  +G s++g +n        +  ++ +f++f+++F+a++++iv+g +aeR+++ ayl++sv+l++++yp+vah vw+++G+l+        + gv+DFAGs+vVHl+gG+++L a+lvlGpR+grf         ++  +++h+v+l +lGt++LwfGWfgFN+GSal  + n+    +aa+aav+T l++a g++ al+++      ++g  k  + +a+ng+l+glva+t+g++v+ep+aa++ G+vag l +++   l  +l+iDD++++++vH ++G+wGli++glfa++++ + ++ + ++             +g  a++l+ q+ ++l+i+ ++fv+++++++ l+  + LR ++ eE +GlD++ hg s
  MMETSP1061-20121228|7144_1  53 LLVVCGGMIFFMQSGFAMMCAGSVRLKNVQNTMLKNLLDACGAALAFYLVGYAFAFGNDLDTDGTSTGRSFIGTEN------FVSVGSSPAFWFFEFTFSATSVTIVAGTLAERCQMAAYLAYSVVLSGFIYPVVAHSVWSEQGFLSRttdaplmDQGVIDFAGSGVVHLNGGLIALYATLVLGPRRGRFydaqgepleKPLPFPGHSVALQLLGTMILWFGWFGFNPGSALllQGNEkfgaVAANAAVATALSGASGGICALFTNLWweerTTGepKFVIQMAMNGALSGLVAVTSGCAVMEPYAAIITGIVAGWLYMISS-SLLIRLRIDDAVNAIPVHMFNGCWGLIATGLFASPDLLELTYINRPAdhpgffysfgreNVGPDANLLVCQICAVLFIVGWTFVTMFPFFIWLNYRGWLRADSLEELVGLDVSYHGRS 486
                 57899******************************************************99999999*99888887......34556789***************************************************7777776666666699*****************************************999*******************************66444478889*****************999997541111445456667799******************************88888887.5999********************************99877777666899**9999988888899**************************************************986 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.3  11.0   9.8e-77     2e-73       3     341 ..      49     398 ..      48     407 .. 0.88
   2 !    3.6   0.0    0.0024       4.9     349     398 ..     436     485 ..     426     491 .. 0.86

  Alignments for each domain:
  == domain 1    score: 245.3 bits;  conditional E-value: 9.8e-77
   TIGR03644   3 ldtflflvsgalvmwmaaGfamleaGlvrskntteiltknvalfaiaaimyllvgynlmypgdalllegileafllaalesvadleagseedaayssasdfffqvvfvatamsivsGavaerlklwaflvfavvltaliyPvegswkwgg.Gll........selgfsdfaGsgivhlaGaaaalagvlllGarkGk.ygkdge....vkaipgsnlplatlGtfilwlGwfGfnGgsqlalsdvedanava.kifvntnaaaaaGaiaalllakllfg.......kadltmvlnGalaGlvaitaePlaPsllaatliGavgGvlvvlsivlldklkiddpvGaisvhgvaGifGllvvp 341
                 l +fl++v+g ++++m +Gfam+ aG vr kn+ + + kn+   + aa+ ++lvgy+ ++ g++l ++g+          +  + + +++  +  ss + +ff   f at+++iv+G++aer ++ a+l+++vvl+++iyPv ++  w+  G+l         + g  dfaGsg+vhl G+  al + l+lG+r G+ y+++ge      ++pg +++l  lGt+ilw+GwfGfn gs l l+  e+  ava +  v t ++ a+G i+al+ ++l+++       k  + m +nGal+Glva+t+     +++aa++ G+v+G l ++s  ll +l+idd+v ai+vh++ G +Gl++  
  MMETSP1061-20121228|7144_1  49 LRSFLLVVCGGMIFFMQSGFAMMCAGSVRLKNVQNTMLKNLLDACGAALAFYLVGYAFAF-GNDLDTDGTS---------TGRSFIGTENFVSVGSSPAFWFFEFTFSATSVTIVAGTLAERCQMAAYLAYSVVLSGFIYPVVAHSVWSEqGFLsrttdaplMDQGVIDFAGSGVVHLNGGLIALYATLVLGPRRGRfYDAQGEplekPLPFPGHSVALQLLGTMILWFGWFGFNPGSALLLQGNEKFGAVAaNAAVATALSGASGGICALF-TNLWWEerttgepKFVIQMAMNGALSGLVAVTSGCAVMEPYAAIITGIVAGWLYMISSSLLIRLRIDDAVNAIPVHMFNGCWGLIATG 398
                 5789**************************************999***************.6666666666.........22233445555667788999*********************************************9998778875554444457899*****************************94567776553356899*********************************999996267899**********9975.678885333334466799******************************************************************9865 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0024
   TIGR03644 349 fvaqligvvaifvfvfvaslivwailkavlGirvseeeeleGldlaelGl 398
                 +v q+ +v+ i+ ++fv+ +  ++ l+    +r    eel Gld++  G 
  MMETSP1061-20121228|7144_1 436 LVCQICAVLFIVGWTFVTMFPFFIWLNYRGWLRADSLEELVGLDVSYHGR 485
                 679****************999999999999*************988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.47
# Mc/sec: 2791.43
//
Query:       MMETSP1061-20121228|7143_1  [L=663]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 2651.78
//
Query:       MMETSP1061-20121228|7147_1  [L=795]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 2914.76
//
Query:       MMETSP1061-20121228|7148_1  [L=761]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-120  399.8   0.7   2.6e-120  399.5   0.5    1.1  1  TIGR01559 squal_synth: farnesyl-diphosphate farnesyltransferase
      3e-50  168.0   0.0    5.1e-50  167.3   0.0    1.3  1  TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase
    6.6e-12   42.8   0.0    3.6e-11   40.4   0.0    1.9  1  TIGR03465 HpnD: squalene synthase HpnD
  ------ inclusion threshold ------
      0.011   13.0   0.1      0.019   12.3   0.0    1.3  1  TIGR03464 HpnC: squalene synthase HpnC


Domain annotation for each model (and alignments):
>> TIGR01559  squal_synth: farnesyl-diphosphate farnesyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  399.5   0.5  2.5e-123  2.6e-120       2     334 ..     330     677 ..     329     680 .. 0.94

  Alignments for each domain:
  == domain 1    score: 399.5 bits;  conditional E-value: 2.5e-123
   TIGR01559   2 elkrcyellnlvsrsfavvikeleaelrdavvifylvlraldtveddmti..sadkkipllrdfhkk.lkdedwkftesdkekdralleefekvlaeflklkekyqeviaditkrmGnGmadfvlkeekne.etvedydkychyvaGlvGlGlsrlfvaakledeslaeseelsnslGlflqktniirdyledldenrefWPreiWskyae..klkdl...kkpenkekaleclnelvtnalshitdvlkylsklkdqsifnfcaiPqvmaiatlalvynneevfkgavklrkGttvklilksknlkavveiflryarkikkkvdke......dPnvlkvseelekie 334
                 +l +c e+l +vsrsfa+vi++l++ +   ++ifylvlraldt+eddmt    +d k+  l +fhk+ l d+ w+++  ++ ++++ll+ef+k   +f kl++k + vi dit+rm +Gma+fv+k+  +    v++y++ych+vaGlvG+Glsrlf++++le+ s a++  ls+++Glflqktniirdyled  ++r+fWP+ +W+k+++  +l+ +    +pe k ++leclnelvt+al+ + d+l ylskl+  +if+fcaiPqvmaiatl+ +ynn +vf+g+vk+rkGt++kl+lk++nl +v ++f+++a+ +  k d +      dP+++++ + +++i 
  MMETSP1061-20121228|7148_1 330 DLAFCDEILCKVSRSFAAVIRQLPSTMLVDILIFYLVLRALDTIEDDMTAfpCNDVKVKHLLNFHKTaLADPTWTMDGVGEADEKRLLQEFDKCHRVFAKLSDKSRRVIVDITQRMATGMAEFVDKDLGQGtTDVDQYNRYCHFVAGLVGEGLSRLFAVSGLEKASFASELFLSDQMGLFLQKTNIIRDYLEDYVDGRAFWPQSVWKKHSKtgELGYFtnqNDPEVKMRSLECLNELVTDALELVPDCLVYLSKLNCSEIFRFCAIPQVMAIATLNYCYNNLNVFTGVVKIRKGTSCKLLLKTNNLDEVHDTFYQFAQGVLRKADANrsqgvlDPSYSRTVKICNTIL 677
                 6789********************************************9744589**********964899******************************************************998765466**************************************************************************98733455551116799999***********************************************************************************************99999999*************9985 PP

>> TIGR02150  IPP_isom_1: isopentenyl-diphosphate delta-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  167.3   0.0     5e-53   5.1e-50       2     159 .]      23     219 ..      22     219 .. 0.92

  Alignments for each domain:
  == domain 1    score: 167.3 bits;  conditional E-value: 5e-53
   TIGR02150   2 ilvdendnvigtaskaevhkketi.....lHlAfSvflfdee.gklLlqrraasKitfPgvwtNscCsHPlkgela..................aaairrllaeLgitaeevd...lkvltrlsYrAas........asGehevdyilfark...aevtvnpn.devaevkyvsleelkellakpkaglsPWlrlil 159
                 +++d++dnvig ask+e h ++ +     lH+AfSvf+fde+ g+lLlq+ra+sKitfP+vwtN+cCsHPl+g                     +aair+l +eLgi+a+e+d   +k+ltrl+Y Aa+         +Gehe+dy+lf      +++t++ + dev++vk+v++e+l e++++    +sPW+rli+
  MMETSP1061-20121228|7148_1  23 LVLDDDDNVIGSASKKESHVFDAKqpraiLHRAFSVFIFDEStGELLLQQRASSKITFPNVWTNTCCSHPLHGMEPpevdtpkdvadgtvmgakNAAIRKLDHELGIPASELDinkFKFLTRLHYWAADtvthgpdsPWGEHEIDYVLFYTVpskSDLTIKGHpDEVDDVKWVTREVLIEMMQDESLLFSPWFRLIC 219
                 67899***************998889999**********985379***************************8655889999******************************999*************99******9**********998644236777887899*******************9999******985 PP

>> TIGR03465  HpnD: squalene synthase HpnD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   3.5e-14   3.6e-11       6     175 ..     342     538 ..     338     556 .. 0.72

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 3.5e-14
   TIGR03465   6 gssfyyamrlLpeekrealtalyAfcrevddivdeeld...pevkqakLdwwra.eidr...lyaGape.............hpvakaLadaarrf..klpqedllevidGmemDleqeryedfaeLklYcdrvAgavGrlsarifGasdeetrelA......ehlGlAlqltnilrdvgeDaergRiYLPaeeLqrf 175
                 ++sf++ +r Lp++    +  +y + r++d i d++ +   ++vk ++L + ++  ++     ++G  e             h+v   L d+ rr   ++ q +   + + +  Dl q    d+++ ++Yc+ vAg vG+   r f+ s  e  ++A      +++Gl lq+tni+rd  eD   gR + P++  +++
  MMETSP1061-20121228|7148_1 342 SRSFAAVIRQLPSTMLVDILIFYLVLRALDTIEDDMTAfpcNDVKVKHLLNFHKtALADptwTMDGVGEadekrllqefdkcHRVFAKLSDKSRRVivDITQRMATGMAEFVDKDLGQG-TTDVDQYNRYCHFVAGLVGEGLSRLFAVSGLEKASFAselflsDQMGLFLQKTNIIRDYLEDYVDGRAFWPQSVWKKH 538
                 57788888888888888888888888888888877554333455555555554413332222455544444667777777778888888888888522556666666777777888775.579*********************9977766665555222222688*************************9987776 PP

>> TIGR03464  HpnC: squalene synthase HpnC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.8e-05     0.019      18     178 ..     354     540 ..     345     592 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.8e-05
   TIGR03464  18 krlrapvaalYafaRtaDDlaDegsas.............aeerlalLdalraeLdavaeg........epa.........aplleaLaetvrerslpiepfldLleAfrqDvsvkr.yatfeelldYCrrSAnPvGrlvLdla......gasdeerlalsdaiCtalQlinflqDvseDlrkdRvYlpaddlerfgv 178
                   +  ++  +Y   R+ D + D+ +a              ++++la+ ++          +        e +         + ++++L ++ r+  ++i++     +A   D +  +   ++++  +YC   A  vG  + +l+      +as +++l lsd++   lQ +n ++D  eD+  +R + p++  +++  
  MMETSP1061-20121228|7148_1 354 STMLVDILIFYLVLRALDTIEDDMTAFpcndvkvkhllnfHKTALADPTW----------TmdgvgeadE-KrllqefdkcHRVFAKLSDKSRRVIVDITQRMATGMAEFVDKDLGQgTTDVDQYNRYCHFVAGLVGEGLSRLFavsgleKASFASELFLSDQMGLFLQKTNIIRDYLEDYVDGRAFWPQSVWKKHSK 540
                 55556677777777777777777665545433333333222222222222..........1222322231.1244445555899999999888887777666555555555555444378999**************86544431111114455678899******************************98887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (761 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 2790.10
//
Query:       MMETSP1061-20121228|7149_1  [L=1167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-07   28.9   0.0    2.8e-07   28.0   0.0    1.3  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
  ------ inclusion threshold ------
      0.045   10.7   0.0      0.076    9.9   0.0    1.3  1  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX


Domain annotation for each model (and alignments):
>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   1.4e-10   2.8e-07      58     169 ..      62     183 ..      31     192 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 1.4e-10
   TIGR00768  58 sdrglavlraleslGveviNssqaienagdKllssalLakaglplpktlvagseeeakkli.eeig....fPvvlKpvfGswGklvvlvedkqeaekllealeqlk....e..kykvflvQey 169
                 sd gla +  l  + ++v N+    e+ ++K+l+ + La++ +p+ ++ +    e+a+ ++ +e+       vv+Kpv+G+  + v+l+ + +++++  e ++       +  k++++lvQey
  MMETSP1061-20121228|7149_1  62 SDPGLADAERLS-AWLNVTNHNGFNEARRNKFLTISTLAAKKIPTVRQQLCSTMEQAMGFAtNEFTsfsaNRVVVKPVRGCASDDVFLCDTLESVRSAYETIQGSTvlgsPtqKHESVLVQEY 183
                 555555555555.4466777665556668*****************99999999998887537777877789******************999999888887754222221348999*****9 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   3.7e-05     0.076      75     171 ..      78     184 ..      65     210 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.7e-05
   TIGR02144  75 vinsseviiacgdKvfttlkLakagvPtPktivafdkeaalklaee..lGy...PvvlKPveGsWGr...lvskvkdkdeaeallehkevlkgs..qlklylvqEyi 171
                 v n++   +a  +K++t ++La++++Pt ++ +    e+a+  a +    +    vv+KPv+G       l   ++++ +a+  ++   vl+ +  +++  lvqEy 
  MMETSP1061-20121228|7149_1  78 VTNHNGFNEARRNKFLTISTLAAKKIPTVRQQLCSTMEQAMGFATNefTSFsanRVVVKPVRGCASDdvfLCDTLESVRSAYETIQGSTVLGSPtqKHESVLVQEYA 184
                 566666677889**************************999876432234522269*******87652223445566666666666677766541155667888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.39
# Mc/sec: 3949.52
//
Query:       MMETSP1061-20121228|7155_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.7    4.5   9.9        4.9    4.1   6.9    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   6.9    0.0012       4.9      94     146 ..      73     124 ..      68     156 .. 0.63

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0012
   TIGR00601  94 aptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegds 146
                 a++++ s+  as+a+k+s+a ++a++ ++s++ ++t+t  +++d  +  + ++
  MMETSP1061-20121228|7155_1  73 ASASA-SSASASPASKTSEAFPTAAKASTSTSTSTTTTNNSETDXVTRVACHV 124
                 44444.46677777777777777777777777777776666666665554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1175.33
//
Query:       MMETSP1061-20121228|7159_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 678.80
//
Query:       MMETSP1061-20121228|7156_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.21
# Mc/sec: 2237.53
//
Query:       MMETSP1061-20121228|7158_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-08   32.1   5.8     0.0018   15.9   0.0    5.2  5  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0   0.00085       3.5      16      26 .]      18      28 ..      15      28 .. 0.90
   2 !    2.4   0.2     0.007        29       1      23 [.      29      50 ..      29      51 .. 0.89
   3 !   15.9   0.0   4.4e-07    0.0018       1      26 []      54      78 ..      54      78 .. 0.94
   4 !    7.2   0.0   0.00022      0.92       7      24 ..      85     101 ..      80     102 .. 0.80
   5 ?   -3.0   0.0      0.36   1.5e+03      15      25 ..     117     127 ..     115     128 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00085
   TIGR02167 16 fdTsnVTnMss 26
                +d+s+V +M s
  MMETSP1061-20121228|7158_1 18 WDVSQVRTMES 28
                *********75 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.007
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTn 23
                MF++ + +++  +  +d+s V +
  MMETSP1061-20121228|7158_1 29 MFNEADVFNQ-TINEWDVSRVQT 50
                9999999999.999******976 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 4.4e-07
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMss 26
                MF+   ++++ ++  +++s VTnM++
  MMETSP1061-20121228|7158_1 54 MFRRAYAFNQ-PINEWNVSRVTNMDG 78
                9999999***.*************85 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.00022
   TIGR02167   7 sLtsLDlSnfdTsnVTnM 24 
                 ++++ ++ n+d+s+ TnM
  MMETSP1061-20121228|7158_1  85 AFNQ-PIGNWDVSKNTNM 101
                 5666.899*********9 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 0.36
   TIGR02167  15 nfdTsnVTnMs 25 
                  +d s V +M 
  MMETSP1061-20121228|7158_1 117 EWDISRVVTMH 127
                 59999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 3193.12
//
Query:       MMETSP1061-20121228|7161_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.094   11.1   3.8       0.25    9.7   2.6    1.7  1  TIGR01601 PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1


Domain annotation for each model (and alignments):
>> TIGR01601  PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.6   6.1e-05      0.25      49      72 ..      58      81 ..      55      88 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 6.1e-05
   TIGR01601 49 ndieskseiqLnnnnpkddeddkd 72
                +d  +k  i  nnnn+kdd+dd  
  MMETSP1061-20121228|7161_1 58 SDSRTKRAIENNNNNNKDDDDDDY 81
                577899999999999*99998863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1441.32
//
Query:       MMETSP1061-20121228|7160_1  [L=794]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   12.7   0.0      0.076    9.4   0.0    2.0  2  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    0.8   0.0    0.0075        31     210     236 ..     361     387 ..     350     393 .. 0.89
   2 !    9.4   0.0   1.9e-05     0.076     289     355 ..     420     485 ..     416     521 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.0075
   TIGR00368 210 GghnllllGPPGsGktllakrlqgllP 236
                 G+ n+l++G P + k  l + + ++ P
  MMETSP1061-20121228|7160_1 361 GDINILMVGDPSTAKSQLLRSAMTIAP 387
                 889**************9999998877 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 1.9e-05
   TIGR00368 289 GeislahnGvlfldellefkrkvldalrePledgeisisrakakilyParfqlvaamnpsPtGhygd 355
                 G + la +G++ +de   +  +   a+ e +e++ ++i++a  +    ar  ++aa np   G+y+ 
  MMETSP1061-20121228|7160_1 420 GAMVLADRGLVCVDEFDKMGENDRVAIHEAMEQQTVTIAKAGIHASLNARCSVLAAANPV-FGQYDR 485
                 8899******************************************************97.466644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 2437.19
//
Query:       MMETSP1061-20121228|7166_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1940.60
//
Query:       MMETSP1061-20121228|7165_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-48  160.9   1.5    2.3e-46  156.1   1.0    2.0  1  TIGR02475 CobW: cobalamin biosynthesis protein CobW
     0.0015   15.9   0.2      0.045   11.0   0.0    2.2  2  TIGR00073 hypB: hydrogenase accessory protein HypB
     0.0016   15.8   0.0     0.0028   15.0   0.0    1.3  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
      0.002   15.8   0.3      0.049   11.2   0.0    2.2  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0034   15.0   0.0     0.0068   14.1   0.0    1.4  1  TIGR00101 ureG: urease accessory protein UreG
  ------ inclusion threshold ------
      0.019   12.6   0.0      0.037   11.7   0.0    1.5  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.1   1.0   3.4e-49   2.3e-46       4     341 ..      12     335 ..       9     336 .. 0.88

  Alignments for each domain:
  == domain 1    score: 156.1 bits;  conditional E-value: 3.4e-49
   TIGR02475   4 ipvtvvtGflGaGkttlirhllenaeGkriavivnefGdlGidGeilkacgieacseeeivelanGcicctvaddflptlekllareeeldhilietsGlalpkplvqafqwp.eirsrvtvdgvvavvdsaavaaGrfaedldaleaqraadenldhespleelfedqlacadlvilnkadlldaaglekvraeiaeelpravkiveaeeGevdaevllGlga.aaeedlearkshhdleeeeeehdhdefdsvvvdlgevadvdalaerleklvee..edvlrikGfvevegkp.lrllvqavGkrvdsyy.drawkaeearstrlvviGlkdldeaaiaaa 341
                  p+tv+tGflGaGkttl++ +l++ +  +i v+ nefG++ id  ++++   +    e+++ + nGc+cc+v  d++ tl +l +r+ e d il+et+Gla p p+v ++q   ++ ++  +d++v+++d++ +          +l      de+  +e  ++e f+ q+a ad ++lnk dl++a+++++  + +a ++++   ++e+e+ + +   +lGl+   +e+ le  +   + +e+e +h+ + ++sv +++    +++ ++  + +l++e   d++r kG +  +g+   +++ q+v ++++      +wk  e+r  ++v iG++ l++++++++
  MMETSP1061-20121228|7165_1  12 TPITVITGFLGAGKTTLVNYILKEQNEWKICVLENEFGEVSIDDGLVAESL-D--APEDLITMDNGCVCCSVRGDLVRTLGQLTKRRLEFDAILLETTGLADPAPIVYTLQTNsKMSENYILDSIVCLADAKHLPL--------HL------DEKKPKEGDVNEAFQ-QVAFADKILLNKVDLVTAEEKKALLTRLA-NINKFAAVIETERSRAPLGEILGLNSfRMESILEVDPDFFESQEGESHHNLEVVQSVGLQFEGSLQAQWFNMFMMDLLREraADLYRTKGLLSFHGQGnAKFVFQGVHEQINFGPaKESWKDGEKRINKFVFIGKN-LNRDELTKS 335
                 59*****************************************99988874.4..3678999***********************************************9975267888999********987642........33......333345666889996.9******************9999998886.6899999*****************973678889999*****9999999999***********9999*99*99999999762269***********9852799*********97651568***************99.999998765 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   6.6e-05     0.045      36      67 ..      18      48 ..       3     123 .. 0.71
   2 ?    2.8   0.0     0.022        15     155     173 ..     163     181 ..     152     208 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.6e-05
   TIGR00073 36 lssiGsGktlllekliealkkevkiavieGDl 67
                 +  G+Gkt+l++ +++++ +e ki+v+e + 
  MMETSP1061-20121228|7165_1 18 TGFLGAGKTTLVNYILKEQ-NEWKICVLENEF 48
                4668********9888765.56*****99765 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.022
   TIGR00073 155 fkeadlilinkvdlveavd 173
                 ++ ad il+nkvdlv a +
  MMETSP1061-20121228|7165_1 163 VAFADKILLNKVDLVTAEE 181
                 5679**********98754 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.1e-06    0.0028      46      73 ..      15      42 ..      10      59 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.1e-06
   TIGR03015 46 ilitGevGaGkttlvrnllkkleaekvv 73
                 +itG +GaGkttlv ++lk++++ k+ 
  MMETSP1061-20121228|7165_1 15 TVITGFLGAGKTTLVNYILKEQNEWKIC 42
                59******************99977765 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   7.2e-05     0.049       7      27 ..      16      36 ..      12      54 .. 0.91
   2 ?    2.4   0.0     0.037        25     117     149 ..     169     199 ..     123     208 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.2e-05
   TIGR00231  7 vivGhvdvGKstLlnsllknk 27
                vi G+ ++GK+tL n++lk++
  MMETSP1061-20121228|7165_1 16 VITGFLGAGKTTLVNYILKEQ 36
                799***************987 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.037
   TIGR00231 117 lvvnKiDlkddlktkvkslfaklnaepiielsa 149
                 + +nK+Dl++   ++ k l+ +l++   +   +
  MMETSP1061-20121228|7165_1 169 ILLNKVDLVT--AEEKKALLTRLANINKFAAVI 199
                 568*******..444444444444433333333 PP

>> TIGR00101  ureG: urease accessory protein UreG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   9.9e-06    0.0068       6     101 ..      17     107 ..      13     119 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 9.9e-06
   TIGR00101   6 vagpvgsgktaliealtrelakkydlavitndiytkedaeflvknsvlpperilgvetggcphtairedaslnleaveelearfpdlelvliesgg 101
                 ++g +g+gkt+l++ + +e +++++++v+ n+       + lv +s+ +pe ++ ++  gc   ++r d      ++ +l+ r  +++ +l+e+ g
  MMETSP1061-20121228|7165_1  17 ITGFLGAGKTTLVNYILKE-QNEWKICVLENEFGEVSIDDGLVAESLDAPEDLITMDN-GCVCCSVRGDLVR---TLGQLTKRRLEFDAILLETTG 107
                 7899***********9998.678**********99999999*************9986.79999****9865...556788888999999999877 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.5e-05     0.037      17      44 ..       7      34 ..       1      37 [. 0.81

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.5e-05
   TIGR00150 17 kaldlatvvlLkGdlGaGKttlvkgllk 44
                 +++l+ + +++G lGaGKttlv  +lk
  MMETSP1061-20121228|7165_1  7 DETKLTPITVITGFLGAGKTTLVNYILK 34
                5567778999************987776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1354.83
//
Query:       MMETSP1061-20121228|7164_1  [L=934]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 3522.22
//
Query:       MMETSP1061-20121228|7162_1  [L=665]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.2e-202  669.6   0.1   8.2e-202  669.1   0.0    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    4.7e-78  260.7   0.3    7.6e-78  260.0   0.2    1.3  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    3.2e-72  241.8   0.1    3.6e-72  241.6   0.0    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.5e-40  137.2   0.3    2.2e-40  136.6   0.2    1.2  1  TIGR03689 pup_AAA: proteasome ATPase
    2.8e-05   21.1   0.0    5.5e-05   20.2   0.0    1.4  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    4.6e-05   20.0   0.0    7.3e-05   19.3   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
      7e-05   19.7   0.9     0.0011   15.8   0.0    2.3  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    0.00019   18.4   0.0    0.00043   17.2   0.0    1.5  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0014   16.0   0.0     0.0028   15.0   0.0    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0019   15.1   0.0     0.0042   14.0   0.0    1.6  1  TIGR02881 spore_V_K: stage V sporulation protein K
      0.002   14.2   0.0      0.025   10.6   0.0    2.0  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
     0.0025   14.2   0.6     0.0044   13.3   0.4    1.3  1  TIGR00763 lon: ATP-dependent protease La
  ------ inclusion threshold ------
      0.011   13.6   0.1      0.025   12.4   0.1    1.5  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  669.1   0.0  2.6e-204  8.2e-202       8     494 ..     134     633 ..     128     635 .. 0.95

  Alignments for each domain:
  == domain 1    score: 669.1 bits;  conditional E-value: 2.6e-204
   TIGR01241   8 sllplilllvglfllflrqakgaggsr.....ifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPee...dklllskkellakiavllgGrvaeeiifg..evttGasnDlkkatkiaramvtelGmseklgavaye.eeeeevllgkelkk.ekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkel 494
                 sl++   l++glf+l +r+  g+gg        ++++kska++++  ++ vtf+dvaG+d ak el e+vdfLk+p+ +t+ G +iP+Gv+l GpPGtGktLlakavaGeagvpf+sisGs+fvemfvGvGasrvrD+f qakknaPciifiDeiDavGr+rgag++ggndereqt+nq+LvemDGf++n g+i +aatnr d+LD+aLlrPGrfDr+v+vd+Pd+kgr+ il vh++ + l+++vdl+++arrtpG+sGa+l+nl+neaa+ aar nk+++  ++++ avdr ++Glek++   + k+k++vayheaGha+vg+lv++ d+v+k++iipr + a+G+t++ P+e   ++ ++sk+ l++++av+lgGr+aeeii+g  +vttGasnD++++++ia++mv ++Gmsek+g + ++ ++++ +++g+++ + + ++ ++  k+ +ee +r+++++y  ak+il e+k+  e+l+k+L+e+e++++ee++ +
  MMETSP1061-20121228|7162_1 134 SLIFPAALFAGLFFLSRRAGGGMGGMGggpggPMGFAKSKAEIQMVPDTGVTFDDVAGCDGAKLELCEVVDFLKQPEAYTNNGCRIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDIFGQAKKNAPCIIFIDEIDAVGRQRGAGFAGGNDEREQTVNQILVEMDGFDGNPGIITIAATNRVDILDQALLRPGRFDRKVTVDLPDFKGRTRILGVHSRGKPLEPDVDLEAIARRTPGYSGAQLENLMNEAAISAARANKSTIGWEQIDGAVDRLMVGLEKQGGNQDMKSKEMVAYHEAGHAVVGALVPDYDQVQKISIIPRSNgAGGLTFFAPQEsrlESGMYSKQYLESQLAVALGGRLAEEIIYGedKVTTGASNDIQQVASIAKRMVQQWGMSEKVGSICLDeSSGNPQFMGMGMLQgRTRWGDKKMKDCEEETERLVNNSYIIAKTILLENKDLFEHLTKALMEQEVVSAEEFQMM 633
                 555668899*********966554432233459**********************************************************************************************************************************************************************************************************************************************************************************************************************9**********97777889*************************999**********************************9666778899988755167899**************************************************9876 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  260.0   0.2   2.4e-80   7.6e-78     118     364 .]     183     428 ..     170     428 .. 0.97

  Alignments for each domain:
  == domain 1    score: 260.0 bits;  conditional E-value: 2.4e-80
   TIGR01242 118 evsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekvl 364
                  v+++d+ G +    e+ e+v++ lk+pe + + G   p+Gv+l GppGtGktllakava e+   fi + gse+v+ ++G Ga+ vr++f  ak+ ap+iifideida++ +r    ++G+ e ++t+ q+l e+dGfd    +  iaatnr+dild allrpGrfdr + v lpd++Gr +il++h+r   l +dvdle++a+ t G sGa+l  ++ ea + a r +++++  e++  av++++
  MMETSP1061-20121228|7162_1 183 GVTFDDVAGCDGAKLELCEVVDF-LKQPEAYTNNGCRIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDIFGQAKKNAPCIIFIDEIDAVGRQRGAGFAGGNDEREQTVNQILVEMDGFDGNPGIITIAATNRVDILDQALLRPGRFDRKVTVDLPDFKGRTRILGVHSRGKPLEPDVDLEAIARRTPGYSGAQLENLMNEAAISAARANKSTIGWEQIDGAVDRLM 428
                 49******************997.9**************************************************************************************************************************************************************************************************************************9976 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  241.6   0.0   1.1e-74   3.6e-72     449     691 ..     183     426 ..     173     625 .. 0.90

  Alignments for each domain:
  == domain 1    score: 241.6 bits;  conditional E-value: 1.1e-74
   TIGR01243 449 nvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeeke 691
                  v ++d+ g + +k el e v++ lk++e++   g r p+gv+l gppgtgktllakava e+g  fi++ g e +  +vg    ++r+if +a++ ap+iif+deida+  +rga +       ++ vnq+l e+dg++ n +++ iaatnr dild allrpgr+dr + v  pd + r  i+ +h+r  pl  dvdle +a++t gy+ga++e ++ eaa++a r    ++  e+++   + 
  MMETSP1061-20121228|7162_1 183 GVTFDDVAGCDGAKLELCEVVDF-LKQPEAYTNNGCRIPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEMFVGVGASRVRDIFGQAKKNAPCIIFIDEIDAVGRQRGAGFAGGndEREQTVNQILVEMDGFDGNPGIITIAATNRVDILDQALLRPGRFDRKVTVDLPDFKGRTRILGVHSRGKPLEPDVDLEAIARRTPGYSGAQLENLMNEAAISAARANKSTIGWEQIDGAVDR 426
                 589******************98.9*******************************************************************************************98654227789*****************************************************************************************************88877777877765444 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.2     7e-43   2.2e-40     174     378 ..     177     370 ..     170     430 .. 0.83

  Alignments for each domain:
  == domain 1    score: 136.6 bits;  conditional E-value: 7e-43
   TIGR03689 174 eevPd..vtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvs..sdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyl 378
                 + vPd  vt++d+ G d    ++ + v++ ++++e y++ + + P+Gv+l GPPG+Gktl+akava            a   f++i G e+++ +vG    ++r if +a+++a    P ++f+de+d++ r rG+G +   d     v q+l e+dG +    +i i a+nr+d++d a+lrPGr+d k+ ++ Pd ++ + il  + 
  MMETSP1061-20121228|7162_1 177 QMVPDtgVTFDDVAGCDGAKLELCEVVDF-LKQPEAYTNNGCRIPRGVILDGPPGTGKTLLAKAVAGE----------AGVPFISISGSEFVEMFVGVGASRVRDIFGQAKKNA----PCIIFIDEIDAVGRQRGAGFAggNDEREQTVNQILVEMDGFDGNPGIITIAATNRVDILDQALLRPGRFDRKVTVDLPDFKGRTRILGVHS 370
                 557876689******99887778888886.6799*******************************964..........3457***************************99876....*******************973357778899***************************************************999997663 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.7e-07   5.5e-05     120     198 ..     223     295 ..     201     318 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.7e-07
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarks 198
                 ++l Gp G+Gktlla+++a e  vpf     + + e  +vG     +     +    + +k    ii+ideid + r+ 
  MMETSP1061-20121228|7162_1 223 VILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEM-FVGVGASRV-----RDIFGQAKKNAPCIIFIDEIDAVGRQR 295
                 5688**********************87777777775.777665544.....3444556788899**********9975 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.3e-07   7.3e-05     315     412 ..     223     319 ..     191     354 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.3e-07
   TIGR03922 315 lllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdga....kddfGleaidtLLarlEn 412
                 ++l GPPGtGkt +A++va   aG+        + +s ++++  ++g  + +  ++  +a      ++F+DE+ a+  +  ga    ++d   + ++++L+ ++ 
  MMETSP1061-20121228|7162_1 223 VILDGPPGTGKTLLAKAVAGE-AGVPF------ISISGSEFVEMFVGVGASRVRDIFGQAKKNapcIIFIDEIDAVGRQ-RGAgfagGNDEREQTVNQILVEMDG 319
                 7999**************975.78765......46899******************99887643339******998766.3441112566677899999999975 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.5e-06    0.0011      46     103 ..     219     274 ..     215     280 .. 0.89
   2 ?    2.5   0.1     0.039        12     248     263 ..     280     295 ..     273     320 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.5e-06
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvda 103
                 +P+ +++ G+ G Gkt +a+ +a  a++Pfi +  + f e+ +vG    s vrd+  +
  MMETSP1061-20121228|7162_1 219 IPRGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEM-FVGVG-ASRVRDIFGQ 274
                 6999************************************7.88875.4778888765 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.039
   TIGR00390 248 sGiifideidkiakkg 263
                   iifideid + ++ 
  MMETSP1061-20121228|7162_1 280 PCIIFIDEIDAVGRQR 295
                 579*******998765 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.4e-06   0.00043      33      95 ..     223     293 ..     214     296 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.4e-06
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpalek......pgDlaailtaleeg..dvlfiDeihrlsk 95 
                 v+l GPPG Gkt lak +a e gv    +sg ++        ++ +  i+ + +++   ++fiDei ++ +
  MMETSP1061-20121228|7162_1 223 VILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVEmfvgvgASRVRDIFGQAKKNapCIIFIDEIDAVGR 293
                 7899********************99999998765312222233444444444443116999999998876 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     9e-06    0.0028      22      56 ..     221     255 ..     201     270 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 9e-06
   TIGR02640  22 ypvhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                 + v l GP GtGkt la +va + + P + + G +
  MMETSP1061-20121228|7162_1 221 RGVILDGPPGTGKTLLAKAVAGEAGVPFISISGSE 255
                 568899*************************9986 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.3e-05    0.0042      45     120 ..     223     294 ..     186     363 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-05
   TIGR02881  45 mifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideayslarG 120
                 +i+ G PGtGkt +a+ +a    e +v     +i +  +++v  ++G  a ++r++    kk    ++fide  ++ r 
  MMETSP1061-20121228|7162_1 223 VILDGPPGTGKTLLAKAVAG---EAGV----PFISISGSEFVEMFVGVGASRVRDIFgqaKKNAPCIIFIDEIDAVGRQ 294
                 6899***********99984...7776....5899********************86333677789******9888764 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   7.8e-05     0.025     486     525 ..     220     258 ..     193     261 .. 0.78
   2 ?    1.2   0.0     0.055        17     264     289 ..     266     291 ..     259     306 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.8e-05
   TIGR02639 486 PvgsflfvGptGvGktelakqLaeelgvellrfDmseyme 525
                 P g  +  Gp G Gkt lak++a e gv ++ +  se+ e
  MMETSP1061-20121228|7162_1 220 PRG-VILDGPPGTGKTLLAKAVAGEAGVPFISISGSEFVE 258
                 444.5779*****************************998 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.055
   TIGR02639 264 erlkevveeiekeedailfiDeihti 289
                  r++++  + +k+   i+fiDei ++
  MMETSP1061-20121228|7162_1 266 SRVRDIFGQAKKNAPCIIFIDEIDAV 291
                 799999999999999********986 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.4   1.4e-05    0.0044     357     435 ..     224     294 ..     214     302 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.4e-05
   TIGR00763 357 clvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgss 435
                 +l GPPG GKt lak++A   +  f+ +s  G + v         +vG    ++ + + ++k++ P +i++DEiD +g++
  MMETSP1061-20121228|7162_1 224 ILDGPPGTGKTLLAKAVAGEAGVPFISIS--GSEFVE-------MFVGVGASRVRDIFGQAKKNAPcIIFIDEIDAVGRQ 294
                 689**********************8666..655443.......577777789999999999999944679999999863 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.8e-05     0.025       3      30 ..     223     250 ..     222     259 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.8e-05
   TIGR02173   3 ivisGpPGsGkttvakilaeklslklis 30 
                 +++ GpPG+Gkt +ak +a + ++ +is
  MMETSP1061-20121228|7162_1 223 VILDGPPGTGKTLLAKAVAGEAGVPFIS 250
                 6889*******************99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (665 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      202  (0.0492443); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.50u 0.18s 00:00:00.68 Elapsed: 00:00:00.41
# Mc/sec: 2140.80
//
Query:       MMETSP1061-20121228|7168_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1007.29
//
Query:       MMETSP1061-20121228|7169_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|7172_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 797.43
//
Query:       MMETSP1061-20121228|7170_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-09   32.9   0.5      0.044   11.2   0.0    4.0  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    3.5e-07   27.9   0.7    6.3e-06   23.8   0.2    2.8  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    4.8e-06   22.5   0.6    9.7e-05   18.2   0.1    2.7  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    5.3e-06   24.9   0.1    5.8e-05   21.5   0.1    2.3  2  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    0.00019   18.8   0.1    0.00032   18.1   0.1    1.3  1  TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO
  ------ inclusion threshold ------
      0.036   10.5   0.9       0.43    6.9   0.1    2.6  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
      0.061   11.4   0.7        5.4    5.3   0.0    3.7  4  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   7.4e-05     0.044     113     168 ..     251     312 ..     247     324 .. 0.73
   2 !    9.8   0.1   0.00019      0.11     113     167 ..     335     395 ..     332     403 .. 0.79
   3 ?    3.3   0.0     0.019        11     134     165 ..     420     451 ..     411     463 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.4e-05
   TIGR02521 113 kkyeeAeqqfeaAiedpk..Yeqpa....rsyeNaglcalkagdtekaekyltralkidpkr 168
                 ++yeeA   fe+ ++ ++  Y+q       ++ N+g+++lk++d +ka +  +ra+ +++++
  MMETSP1061-20121228|7170_1 251 GEYEEAADVFEEILRGQQerYGQDHyrvgTALHNLGIVYLKKKDYKKAIEICQRAVTVRKDS 312
                 67888888888777655444655432222789999999999999999999999998887765 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00019
   TIGR02521 113 kkyeeAeqqfeaAie......dpkYeqparsyeNaglcalkagdtekaekyltralkidpk 167
                 ++y+eA + f+ A++       p  ++ ++ ++N+g  +++++d+  a+ ++ +al+i+++
  MMETSP1061-20121228|7170_1 335 QNYHEALEAFRDALHirrnflGPRHTKCSKILNNIGCALYSIEDFGAAKRAFDEALDIQRD 395
                 5788888888888762222224778888999999999999999999999999999999987 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.019
   TIGR02521 134 parsyeNaglcalkagdtekaekyltralkid 165
                  a+++ N+g + l+ gd+++a  +l +al ++
  MMETSP1061-20121228|7170_1 420 MASTLCNIGSIRLRWGDFDEAGIALDEALLVQ 451
                 578999********************999766 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.2   1.1e-08   6.3e-06      16     117 ..     235     352 ..     229     368 .. 0.76
   2 !    6.6   0.1    0.0022       1.3      57      84 ..     326     353 ..     321     408 .. 0.66

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.1e-08
   TIGR02552  16 eqleaiYalAYnlyqqgkyeeAeklFqlLaald...pteakywlg.....LaaclqalkeyeeAiaaYalaaald.....lddprpvy...haaecllalgekeeAlkaLklaieiae 117
                  +l ai+++A ++ ++g+yeeA+ +F+     +   + + +y +g     L+ ++ ++k+y++Ai++ ++a++++     +++p++ +   ++++ +l+ +++ eAl+a++ a+ i +
  MMETSP1061-20121228|7170_1 235 HNLRAIHEMAAEHLAHGEYEEAADVFEEILRGQqerYGQDHYRVGtalhnLGIVYLKKKDYKKAIEICQRAVTVRkdslvPNHPDVAVslaQLGVAHLESQNYHEALEAFRDALHIRR 352
                 6899**********************865543312244556765544444999******************99762222256777776222455689999***********9998876 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0022
   TIGR02552  57 gLaaclqalkeyeeAiaaYalaaaldld 84 
                  L++++ + ++y eA++a+  a+ ++++
  MMETSP1061-20121228|7170_1 326 QLGVAHLESQNYHEALEAFRDALHIRRN 353
                 6999****************99999865 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.1   1.7e-07   9.7e-05     325     426 ..     233     350 ..     227     355 .. 0.59
   2 !    9.5   0.1   7.1e-05     0.042     460     498 ..     316     354 ..     310     400 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 1.7e-07
   TIGR02917 325 aPnshqArrllAaiqLkegkvdeaiatlspalekds....dd....sallsllGeayLekgdfekAaeylakase........ldPenaaaktklgiskLaqGdkseaiadLetAvkl 426
                 a+++  A+  +Aa  L+ g+++ea+   +++l+ ++    +d      +l  lG+ yL+k+d++kA+e  ++a          + P+ a   ++lg+ +L + +  ea++++++A+++
  MMETSP1061-20121228|7170_1 233 AEHNLRAIHEMAAEHLAHGEYEEAADVFEEILRGQQerygQDhyrvGTALHNLGIVYLKKKDYKKAIEICQRAVTvrkdslvpNHPDVAVSLAQLGVAHLESQNYHEALEAFRDALHI 350
                 6677777777777777777777777777777654441111222222457777777777777777777777777541112211124555555567777777766666677777777655 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 7.1e-05
   TIGR02917 460 kqpdnaslynllgaiylgkkdlakAreafekALkiepdf 498
                 + pd a +   lg ++l ++++ +A eaf+ AL i ++f
  MMETSP1061-20121228|7170_1 316 NHPDVAVSLAQLGVAHLESQNYHEALEAFRDALHIRRNF 354
                 556666666666666666666666666666666666665 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1     1e-07   5.8e-05       4     100 ..     239     345 ..     236     349 .. 0.79
   2 ?    4.0   0.0     0.027        16      45     100 ..     327     387 ..     315     393 .. 0.57

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1e-07
   TIGR02795   4 aeykaallvlkegdYakAeqaFkaFl....kkYPkstla.pnAqYwlGealyakkkykdAakaflevvkk.....ypksekapdallklgeslqelgqkekAkktlq 100
                 a  + a ++l +g+Y++A++ F++ l    ++Y ++++  + A   lG ++++kk+yk+A++  + +v+       p+++ ++ +l +lg++  e+++ ++A + ++
  MMETSP1061-20121228|7170_1 239 AIHEMAAEHLAHGEYEEAADVFEEILrgqqERYGQDHYRvGTALHNLGIVYLKKKDYKKAIEICQRAVTVrkdslVPNHPDVAVSLAQLGVAHLESQNYHEALEAFR 345
                 5678899****************997333368**9999537899******************999887641122246677777788888888888888888877665 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.027
   TIGR02795  45 lGealyakkkykdAakaflevvkky.....pksekapdallklgeslqelgqkekAkktlq 100
                 lG a ++ ++y++A +af+++++       p ++k ++ l ++g +l+ +++  +Ak+ ++
  MMETSP1061-20121228|7170_1 327 LGVAHLESQNYHEALEAFRDALHIRrnflgPRHTKCSKILNNIGCALYSIEDFGAAKRAFD 387
                 4555566666666666666555422112335566666666666666666666666655554 PP

>> TIGR03302  OM_YfiO: outer membrane assembly lipoprotein YfiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   5.5e-07   0.00032      32     122 ..     236     336 ..     223     365 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.5e-07
   TIGR03302  32 saeelYeeaeeelekgnykeAikkfeel....esrypfseyae.qaqLdlayayYksgeyeeAlaaadrFik.....lyPnhedvdyalYliglsnykqid 122
                 +  ++ e a e+l +g+y+eA++ fee+    ++ry + +y    a  +l+ +y k+++y++A++ ++r ++     l Pnh+dv+  l + g+++ + ++
  MMETSP1061-20121228|7170_1 236 NLRAIHEMAAEHLAHGEYEEAADVFEEIlrgqQERYGQDHYRVgTALHNLGIVYLKKKDYKKAIEICQRAVTvrkdsLVPNHPDVAVSLAQLGVAHLESQN 336
                 55678899*******************955555677777887615666899*****************99853333379****************999832 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.1   0.00074      0.43     127     161 ..     279     313 ..     267     342 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00074
   TIGR00990 127 aaklkekGnkayrnkdfdkaielyskalllkedPv 161
                   +l ++G  + ++kd++kaie+ ++a+ +++d +
  MMETSP1061-20121228|7170_1 279 GTALHNLGIVYLKKKDYKKAIEICQRAVTVRKDSL 313
                 46899999999********************9975 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0091       5.4      13      27 ..     250     264 ..     247     266 .. 0.87
   2 ?    1.0   0.0       0.2   1.2e+02      10      25 ..     289     304 ..     288     307 .. 0.87
   3 ?   -0.6   0.0      0.68     4e+02      11      25 ..     332     346 ..     330     348 .. 0.82
   4 ?   -2.4   0.0       2.5   1.4e+03      12      19 ..     433     440 ..     432     440 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0091
   TIGR00756  13 agrveeAlelfdeMk 27 
                 +g++eeA ++f+e++
  MMETSP1061-20121228|7170_1 250 HGEYEEAADVFEEIL 264
                 89**********986 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.2
   TIGR00756  10 lckagrveeAlelfde 25 
                 + k +++++A+e+ ++
  MMETSP1061-20121228|7170_1 289 YLKKKDYKKAIEICQR 304
                 89*********99775 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.68
   TIGR00756  11 ckagrveeAlelfde 25 
                  ++ +++eAle f++
  MMETSP1061-20121228|7170_1 332 LESQNYHEALEAFRD 346
                 56789*******986 PP

  == domain 4    score: -2.4 bits;  conditional E-value: 2.5
   TIGR00756  12 kagrveeA 19 
                 ++g+++eA
  MMETSP1061-20121228|7170_1 433 RWGDFDEA 440
                 89****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.54
# Mc/sec: 1315.00
//
Query:       MMETSP1061-20121228|7171_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 2380.20
//
Query:       MMETSP1061-20121228|7177_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 522.22
//
Query:       MMETSP1061-20121228|7173_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 2283.99
//
Query:       MMETSP1061-20121228|7176_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 2718.98
//
Query:       MMETSP1061-20121228|7178_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1356.30
//
Query:       MMETSP1061-20121228|7181_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   15.3   0.0     0.0073   14.1   0.0    1.6  1  TIGR02909 spore_YkwD: uncharacterized protein, YkwD family


Domain annotation for each model (and alignments):
>> TIGR02909  spore_YkwD: uncharacterized protein, YkwD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.8e-06    0.0073      40     121 ..      40     125 ..      20     129 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.8e-06
   TIGR02909  40 dmadkn.yfshtsPtyGsp.fdmlkkfGisyraaGeniaagnstvekvv..ealmnseghraniLspeyteiGvglvksgsygklw 121
                 dm  kn  fs   Pt  +   + l++ G+  r  Gen+a++++  + ++  + lm   g ++  L p y + G ++v++++ ++ +
  MMETSP1061-20121228|7181_1  40 DMEAKNrAFSIDVPTLPNDvRQALRNMGLPVRLFGENLANVRDRLRMAMarKELMEERGIKQEGLRPGYGQQGKTTVEGHDEEEQI 125
                 77655426999999997651689****************99887665442289*********************999998876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.40
# Mc/sec: 1808.25
//
Query:       MMETSP1061-20121228|7179_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.74
# Mc/sec: 215.82
//
Query:       MMETSP1061-20121228|7174_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.50
# Mc/sec: 1288.21
//
Query:       MMETSP1061-20121228|7187_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-05   21.1   7.1    0.00025   19.0   0.6    2.9  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
     0.0012   16.2   0.0      0.005   14.1   0.0    1.9  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ


Domain annotation for each model (and alignments):
>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.6   1.2e-07   0.00025       1      70 [.      33     116 ..      33     135 .. 0.73
   2 !    3.8   0.7    0.0058        12      70      98 ..     138     166 ..     126     209 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.2e-07
   TIGR00714   1 yqlDekaLrkryrklQkqyHPD...............vsksaqeqaaalqqStelNqAykTLkdplkRaeyllkLqrnidLasEq 70 
                 + + ++ L+  y++l ++yHPD                 +   +  a l +  ++ +Ay+ L+ p  Ra   l+L+ +  L ++ 
  MMETSP1061-20121228|7187_1  33 FGIQQSELKGTYLRLMNEYHPDkqrhvvatendnnndNNNDNNNDNAPLLTAETITHAYQILRAPHTRAAHWLELH-GCPLYDDD 116
                 568999****************99997532221111100111122344668899**********************.98887665 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0058
   TIGR00714  70 qksvrdvafllellklrdeleeieqakde 98 
                 q+  + + fl+e++++r+++e+   + +e
  MMETSP1061-20121228|7187_1 138 QTELVGMEFLMEMMEWRERIEDATTMMEE 166
                 55678899**********99987776554 PP

>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.4e-06     0.005       1      36 [.      22      64 ..      22     175 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.4e-06
   TIGR02349  1 dYYeiLgvskd..AseeeikkAYrklakkyHPDrnkg.....e 36
                d++ + g++++   +++e+k +Y +l  +yHPD++++     +
  MMETSP1061-20121228|7187_1 22 DFFRLFGLPRKfgIQQSELKGTYLRLMNEYHPDKQRHvvateN 64
                67777777776335899****************9885443330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.38
# Mc/sec: 788.46
//
Query:       MMETSP1061-20121228|7184_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   13.7   0.2       0.24   10.5   0.0    2.5  2  TIGR03661 T1SS_VCA0849: type 1 secretion C-terminal target domain (VC_A0849 subclass)


Domain annotation for each model (and alignments):
>> TIGR03661  T1SS_VCA0849: type 1 secretion C-terminal target domain (VC_A0849 subclass)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   5.9e-05      0.24      32      74 ..     208     250 ..     195     264 .. 0.82
   2 ?   -0.6   0.0      0.17   7.1e+02      25      53 ..     541     568 ..     532     599 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 5.9e-05
   TIGR03661  32 qyLnvttssedgstvisvdsdgsagsaakvtqtitLegvdlss 74 
                 +yL++++s++  +++i +d++ s+ + ++v+++i+L+g + ++
  MMETSP1061-20121228|7184_1 208 EYLDLSSSEQPSTSDIRHDKESSKSNPKEVQSHIKLTGSKHAK 250
                 7**********9****999999999999*********988654 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.17
   TIGR03661  25 assssldqyLnvttssedgstvisvdsdg 53 
                 +++++l++yL+++   e+ ++ + v+s g
  MMETSP1061-20121228|7184_1 541 SNEAELQDYLEIVRFHEK-EAEDGVKSVG 568
                 567899999999876653.4444455544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.36
# Mc/sec: 2441.80
//
Query:       MMETSP1061-20121228|7185_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-48  163.0   0.0    1.3e-47  160.4   0.0    1.9  1  TIGR00376 TIGR00376: putative DNA helicase
     0.0021   13.9   0.1     0.0078   12.0   0.0    1.7  2  TIGR01448 recD_rel: helicase, RecD/TraA family


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.4   0.0   6.5e-51   1.3e-47     338     613 ..     258     559 ..     242     588 .. 0.80

  Alignments for each domain:
  == domain 1    score: 160.4 bits;  conditional E-value: 6.5e-51
   TIGR00376 338 ivdeileesdvvlstnssaaleilk...eFDvvviDEasqAlepsvliPlvkarklilA.GDhkqLPPtvlsed..aeeLektLferlikkypersklLnvqYRmnekimefpskefYngklkAde..svani.....llrdlvkeeate..veedledkiPllfidtsglelleakekdstskynegEvelvkeiikeLvklg.................vpeeeigvisPYdaqvdllrkll.eekkidiEvssvDGFqGREkeviilslvRsnrkgevGFLkdlRRlnvaltRarRklivigdsev 613
                  v e l+ + +v  t s+a++  +k   + D  ++DEa+ A e+++liPl   +k +lA GD  qLP  v s      +L ++L erl  + ++   +L+vqYRm+++i efps+ fY+g+l+  +  s+an      ++    +++     + + l+   P  f++++g+e+    + +s s+yn++E++ v+   k +++                      e i +i+ Y aqv  l+++l  e ++d+ v +vD  qG E + +ils+vR+ r    GFL d+RR+nvaltRa+ kli +g+ + 
  MMETSP1061-20121228|7185_1 258 AVPELLATARIVFCTLSTAGTFLMKrtrRVDDWIVDEAAAANEAELLIPLHLDPKRLLAvGDPMQLPASVASPLasEWGLGRSLHERLTVELGRSQTMLDVQYRMKPEISEFPSHRFYDGRLTNGDnvSCANYgsfnpAVHSFGENKGSGtgSGHLLQSTPPWCFFQVDGTER----QSHSGSYYNIEEASAVVAFLKLIRSRSssaagssrdprrhcsawCSPERIRIITFYTAQVATLNQMLrREGMPDVLVATVDSSQGCEADTVILSFVRTYR---AGFLSDDRRMNVALTRAKHKLIGLGNAKH 559
                 45577888999999999999877776789*********************9999777766***********976435579******************************************986512556542211145555555443333677788899999*99999998....78899*********99988766554221111111112222222256788******************77889****************************...9************************9875 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.033        68     421     457 ..     291     325 ..     280     331 .. 0.65
   2 !   12.0   0.0   3.8e-06    0.0078     651     699 ..     508     558 ..     489     574 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.033
   TIGR01448 421 ivDEvsmvdtwllssllaavp.ddarlllvGDadqLPs 457
                 ivDE +  +++   +ll  +  d  rll vGD  qLP+
  MMETSP1061-20121228|7185_1 291 IVDEAAAANEA---ELLIPLHlDPKRLLAVGDPMQLPA 325
                 55555555553...33333331346899*********5 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.8e-06
   TIGR01448 651 lsiHksqGsefsvVilpiveahlr.mLe.RnllYTalTRakkklvlvGske 699
                  ++  sqG e+ +Vil  v++++   L+    +  alTRak+kl+ +G+++
  MMETSP1061-20121228|7185_1 508 ATVDSSQGCEADTVILSFVRTYRAgFLSdDRRMNVALTRAKHKLIGLGNAK 558
                 58999************999987635652345889*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 2305.93
//
Query:       MMETSP1061-20121228|7188_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-10   35.3   6.3    1.3e-09   34.5   4.3    1.3  1  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   4.3   3.1e-13   1.3e-09     507     626 ..     128     247 ..     100     253 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 3.1e-13
   TIGR00870 507 ilrDllrFlfiylvvLlaFavalvqlykyydekklneesslkpirceiee..naystlletlleLFwaiiGlvdllkaehkftefvglllfgaYvviavilLLNmLIAmmgntyqeiaeead 626
                 ++r l+ Fl+  lv+L++Fa+ +  +y ++   k   ++   ++++++e+  +    + +++l+ +  ++G   +  +  ++ + v+ +l+  Y +  vilL N LIA++ ++y+ +++++ 
  MMETSP1061-20121228|7188_1 128 VVRRLVAFLMAILVILISFAQMFWVVYLEQPVCKFRCDEDDSQCKADMEGcvYPHCEFGDSFLKVYTMMMGE--IGTETRYDQNLVAQILYIFYGFFIVILLSNVLIAIVTDSYEIVQNDRA 247
                 5567899***********************999999888888899999996666666778888888777775..77888888999********************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 2284.43
//
Query:       MMETSP1061-20121228|7186_1  [L=1016]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1016 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.55
# Mc/sec: 2438.20
//
Query:       MMETSP1061-20121228|7190_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 2054.63
//
Query:       MMETSP1061-20121228|7197_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 485.96
//
Query:       MMETSP1061-20121228|7193_1  [L=783]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-172  571.8   5.3   3.4e-172  571.5   3.7    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    7.1e-69  230.5   0.3    1.1e-68  229.9   0.2    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
      1e-60  203.7   0.1    1.2e-60  203.5   0.1    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    2.3e-33  113.5   0.0    4.4e-33  112.6   0.0    1.4  1  TIGR03689 pup_AAA: proteasome ATPase
    2.8e-07   27.7   0.0      5e-07   26.9   0.0    1.3  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    4.1e-06   23.5   0.0      1e-05   22.1   0.0    1.6  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    3.2e-05   21.0   0.0    5.6e-05   20.1   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    6.5e-05   19.4   0.0    0.00011   18.6   0.0    1.3  1  TIGR00763 lon: ATP-dependent protease La
     0.0007   15.7   0.4       0.27    7.2   0.0    2.3  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
     0.0012   15.7   0.2      0.013   12.3   0.0    2.1  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
     0.0022   14.9   0.2     0.0095   12.8   0.1    2.0  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0024   14.6   0.1      0.052   10.2   0.0    2.4  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      0.005   13.3   0.0      0.011   12.2   0.0    1.6  1  TIGR00368 TIGR00368: Mg chelatase-like protein
  ------ inclusion threshold ------
      0.019   12.4   0.1      0.051   11.0   0.1    1.7  1  TIGR00678 holB: DNA polymerase III, delta' subunit
      0.021   12.6   0.1       0.24    9.2   0.0    2.5  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
      0.025   11.5   0.0      0.042   10.7   0.0    1.3  1  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
      0.038   11.0   0.1        0.1    9.7   0.0    1.7  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  571.5   3.7  1.4e-174  3.4e-172      15     495 ..     201     671 ..     189     672 .. 0.92

  Alignments for each domain:
  == domain 1    score: 571.5 bits;  conditional E-value: 1.4e-174
   TIGR01241  15 llvglfllflrqakgaggsr..ifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGqalGvtlslPeedklllskkellakiavllgGrvaeeiifg..evttGasnDlkkatkiaramvtelGmseklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkell 495
                 + +++   ++   +++g +r   ++ g  + + +++++  v+f+dv G+dea  el+eiv +L np+kft+lG+k P+G+ll+GpPGtGktLlaka+aGeagvpff  sGs+f e++vG+Ga+rvr+lfe akk++PciifiDeiDavG +r+    + ++    tLn lLv+mDGfe+n+g+iv+ atn  + LD+aLlrPGrfD++++v++Pd+ gr+eil+++akk+kl+++vdl+ +ar t+GfsGa+l nl+n+aal a+ ++ +++t+  le a+d++++G+e+k+ vi+++  + +ayheaGhalv++l++ a +++k ti+prGq+lG++++lPe d++++s +e++a+++v++gGrvaee+ifg  e+t+Gas+D+++at++ar+mvt++G+se++g v y  ++           +++ s+et ++iD+evkr+ +++yk+ak++l+++ ++ +llak+Lle+et++ +e+++l+
  MMETSP1061-20121228|7193_1 201 IAFVVVSAISALLDEKGVGRglGMNSGTKHIQ-QAQDTSDVSFDDVKGVDEALAELKEIVMYLENPTKFTRLGGKLPRGLLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEVYVGLGAKRVRELFEAAKKKSPCIIFIDEIDAVGGSRKL---KDQSALKMTLNELLVQMDGFEDNNGIIVIGATNFMESLDQALLRPGRFDKHITVSLPDVGGRKEILEMYAKKTKLDADVDLNILARGTTGFSGAELHNLMNQAALKASVDGLASITMAVLEYAKDKILMGAERKTAVITKETARCTAYHEAGHALVAVLTEGAMPIHKATIMPRGQSLGMVTMLPEGDQTSQSLREMKANMDVAMGGRVAEELIFGkeETTSGASSDIANATNVARNMVTKFGFSEEIGLVRYGGST----------GQEHASDETRNKIDTEVKRLTDASYKRAKDLLTKYSKQHHLLAKTLLEYETLTGDEVRDLV 671
                 22222222222222333233014555544443.4455899****************************************************************************************************************97...45778899****************************************************************************************************************************************************************************************************************999**********************************9443..........35689****************************************************9987 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.9   0.2   4.4e-71   1.1e-68     114     364 .]     235     481 ..     228     481 .. 0.96

  Alignments for each domain:
  == domain 1    score: 229.9 bits;  conditional E-value: 4.4e-71
   TIGR01242 114 eerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekvl 364
                 ++  +vs++d+ G+++ l e++e+v + l +p  f ++G + p+G+ll GppGtGktllaka+a e+   f    gs++ + y+G Ga+ vre+f+ ak+k+p+iifideida++  r  ++ s    ++ tl +ll ++dGf+  + + vi+atn ++ ld allrpGrfd+ i v lpd+ Gr eil+++++k kl  dvdl+ la+ t G+sGa+l  ++ +a + a  +  + +tm+ +  a +k+l
  MMETSP1061-20121228|7193_1 235 QDTSDVSFDDVKGVDEALAELKEIV-MYLENPTKFTRLGGKLPRGLLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEVYVGLGAKRVRELFEAAKKKSPCIIFIDEIDAVGGSRKLKDQS---ALKMTLNELLVQMDGFEDNNGIIVIGATNFMESLDQALLRPGRFDKHITVSLPDVGGRKEILEMYAKKTKLDADVDLNILARGTTGFSGAELHNLMNQAALKASVDGLASITMAVLEYAKDKIL 481
                 56789******************77.67**************************************************************************************9988776665...5889*****************************************************************************************************************9999985 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.5   0.1     5e-63   1.2e-60     172     687 ..     237     475 ..     182     641 .. 0.69

  Alignments for each domain:
  == domain 1    score: 203.5 bits;  conditional E-value: 5e-63
   TIGR01243 172 vpevtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvdldklaevthgfvgadlaalakeaamaalrrllregkidleaeeipkevleelkvtkkdfkealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakeklea 687
                                                                                                                                                                                                                                                                                                      +v ++d+ g++e+  el+e v + l ++  f +lg + p+g+ll gppgtgktllaka+a e+g  f    g +    +vg   k++re+f+ a++ +p+iif+deida+  +r  + ++a     +n+ll ++dg+e+n++++vi+atn  + ld allrpgr+d+ i v  pd   r+ei+ +++++ +l  dvdl+ la+ t g++ga+++ ++ +aal+a  + + s++   le 
  MMETSP1061-20121228|7193_1 237 TS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DVSFDDVKGVDEALAELKEIVMY-LENPTKFTRLGGKLPRGLLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEVYVGLGAKRVRELFEAAKKKSPCIIFIDEIDAVGGSRKLKDQSA-LKMTLNELLVQMDGFEDNNGIIVIGATNFMESLDQALLRPGRFDKHITVSLPDVGGRKEILEMYAKKTKLDADVDLNILARGTTGFSGAELHNLMNQAALKASVDGLASITMAVLEY 475
                 44...................................................................................................................................................................................................................................................................................55566666666666666665544.5555566666666666666666666666666666666666666666666666666666666666666666666666666666666665555443333.334456666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666655555555555555554 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.6   0.0   1.8e-35   4.4e-33     174     381 ..     235     426 ..     226     461 .. 0.88

  Alignments for each domain:
  == domain 1    score: 112.6 bits;  conditional E-value: 1.8e-35
   TIGR03689 174 eevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylted 381
                 +++ dv+++d+ G+d+ + ++++ v + + ++  +++ + k P+G+ll GPPG+Gktl+aka+a              ++f++  G ++ + yvG   +++r +fe a++k    +P ++f+de+d++   r     s +  t +  ll ++dG e+ + +iviGa+n  + +d a+lrPGr+d  i ++ Pd  + ++il+ y +++
  MMETSP1061-20121228|7193_1 235 QDTSDVSFDDVKGVDEALAELKEIV-MYLENPTKFTRLGGKLPRGLLLTGPPGTGKTLLAKAIAGEA---------GVPFFFS-SGSQFEEVYVGLGAKRVRELFEAAKKK----SPCIIFIDEIDAVGGSRKLKDQSALKMT-LNELLVQMDGFEDNNGIIVIGATNFMESLDQALLRPGRFDKHITVSLPDVGGRKEILEMYAKKT 426
                 5789******************988.568999*******************************9642.........3466665.7********************988776....7*****************9999999877.579*******************************************************998653 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.1e-09     5e-07     120     199 ..     279     354 ..     275     365 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.1e-09
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidki..arkse 199
                 +ll Gp G+Gktlla+++a e  vpf  +  + + e  yvG   + +  +l++aa+    k    ii+ideid +  +rk +
  MMETSP1061-20121228|7193_1 279 LLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQF-EEVYVGLGAKRV-RELFEAAK----KKSPCIIFIDEIDAVggSRKLK 354
                 689************************9988776.557***998875.78888875....67789********994455555 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.2e-08     1e-05     314     432 ..     278     395 ..     272     408 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.2e-08
   TIGR03922 314 HlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdgakddfGleaidtLLarlEn..dRdrlvviiAG.YekdlDklL 432
                  lll GPPGtGkt +A+++a   aG+           s +++   y+g  +++  el + a  +   ++F+DE+ a+   r+ + +      ++ LL++++   d + ++vi+A  + + lD+ L
  MMETSP1061-20121228|7193_1 278 GLLLTGPPGTGKTLLAKAIAGE-AGVPFF------FSSGSQFEEVYVGLGAKRVRELFEAAKKKspcIIFIDEIDAVGGSRKLKDQSALKMTLNELLVQMDGfeDNNGIIVIGATnFMESLDQAL 395
                 589***************9975.787655......4578999999**************998754449*********999777777777889********9722555577777643666777655 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.3e-07   5.6e-05      33      93 ..     279     347 ..     266     370 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.3e-07
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpalek......pgDlaailtaleegd..vlfiDeihrl 93 
                 +ll+GPPG Gkt lak ia e gv     sg ++e       ++ +  ++ a ++++  ++fiDei ++
  MMETSP1061-20121228|7193_1 279 LLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEvyvglgAKRVRELFEAAKKKSpcIIFIDEIDAV 347
                 89*******************************997333333456666777777665559999999887 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.7e-07   0.00011     356     444 ..     279     359 ..     230     376 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.7e-07
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgssvrGdPasaL 444
                 l l+GPPG GKt lak+iA   +  f+ +s G   +          YvG    ++ + ++ +k+++P +i++DEiD +g s +    saL
  MMETSP1061-20121228|7193_1 279 LLLTGPPGTGKTLLAKAIAGEAGVPFF-FSSGSQFE--------EVYVGLGAKRVRELFEAAKKKSPcIIFIDEIDAVGGSRKLKDQSAL 359
                 89************************9.77776443........36***88888888889999999945679******988877777776 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0017       0.4     490     521 ..     279     310 ..     243     317 .. 0.81
   2 !    7.2   0.0    0.0011      0.27     263     357 ..     321     419 ..     315     427 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0017
   TIGR02639 490 flfvGptGvGktelakqLaeelgvellrfDms 521
                 +l +Gp G Gkt lak++a e gv +     s
  MMETSP1061-20121228|7193_1 279 LLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGS 310
                 689*********************98755555 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0011
   TIGR02639 263 eerlkevveeiekeedailfiDeihtivgaga...tsggsldasnlLkPa...lasGkirciGsttyeeykkifekdkaLsr..rfqk.idveePskeetvkil 357
                  +r++e+ e  +k++  i+fiDei ++ g+      s  ++   +lL  +    ++  i +iG+t ++e       d+aL r  rf+k i v+ P     ++il
  MMETSP1061-20121228|7193_1 321 AKRVRELFEAAKKKSPCIIFIDEIDAVGGSRKlkdQSALKMTLNELLVQMdgfEDNNGIIVIGATNFMES-----LDQALLRpgRFDKhITVSLPDVGGRKEIL 419
                 6899**********************999876111455568888998654221456779999*9999984.....45666665577654677777666666666 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   5.2e-05     0.013      46     104 ..     275     331 ..     269     334 .. 0.89
   2 ?    1.1   0.1      0.13        32     247     261 ..     335     349 ..     329     364 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.2e-05
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaa 104
                 +P+ +l+ G+ G Gkt +a+ +a  a++Pf     ++f ev yvG   +  vr+l +aa
  MMETSP1061-20121228|7193_1 275 LPRGLLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFEEV-YVGLGAK-RVRELFEAA 331
                 59999***********************************9.9998765.467777765 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.13
   TIGR00390 247 esGiifideidkiak 261
                 +  iifideid +  
  MMETSP1061-20121228|7193_1 335 SPCIIFIDEIDAVGG 349
                 567********8864 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   3.9e-05    0.0095      43     159 ..     277     392 ..     240     430 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.9e-05
   TIGR02881  43 lhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideaysla..rG.GekdfGkeaidtlvkemedkreelvlilaGysdemdyfl 159
                   ++++G PGtGkt +a+ +a        +s G   e         y+G  a+++re+    kk +  ++fide  ++   r   ++   k +++ l+ +m+  +++  +i+ G ++ m+ + 
  MMETSP1061-20121228|7193_1 277 RGLLLTGPPGTGKTLLAKAIAGEAGVPFFFSSGSQFE-------EVYVGLGAKRVRELFeaaKKKSPCIIFIDEIDAVGgsRKlKDQSALKMTLNELLVQMDGFEDNNGIIVIGATNFMESLD 392
                 457899************9997665555677777666.......35**********976333777889******8776311221223344777888888998888887788888777777653 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00021     0.052      35      61 ..     271     297 ..     242     301 .. 0.84
   2 ?    1.7   0.0     0.083        20     118     183 ..     325     392 ..     308     396 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00021
   TIGR02928  35 lrgsrpsnvliyGktGtGKtavtkkvl 61 
                 l g+ p+ +l+ G++GtGKt+ +k++ 
  MMETSP1061-20121228|7193_1 271 LGGKLPRGLLLTGPPGTGKTLLAKAIA 297
                 55999*****************99876 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.083
   TIGR02928 118 eelvkeleeredsliivLDEiDklv..kkeade.....lLyeLsraeengdlekakvsvigisndlkfleeld 183
                 +el+++ +++    ii +DEiD +   +k +d+     +L eL+    +g  ++  + vig +n   f+e+ld
  MMETSP1061-20121228|7193_1 325 RELFEAAKKK-SPCIIFIDEIDAVGgsRKLKDQsalkmTLNELLVQ-MDGFEDNNGIIVIGATN---FMESLD 392
                 5566655554.5567788****997633333435544444444322.34444445566666555...444444 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.5e-05     0.011     213     233 ..     278     298 ..     230     301 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.5e-05
   TIGR00368 213 nllllGPPGsGktllakrlqg 233
                  lll GPPG+Gktllak + g
  MMETSP1061-20121228|7193_1 278 GLLLTGPPGTGKTLLAKAIAG 298
                 589**************9976 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00021     0.051      11      35 ..     273     297 ..     266     301 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00021
   TIGR00678  11 grlahAlLfaGpeGvGkealaeala 35 
                 g+l+  lL++Gp+G+Gk+ la+a+a
  MMETSP1061-20121228|7193_1 273 GKLPRGLLLTGPPGTGKTLLAKAIA 297
                 78999******************98 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00099      0.24       5      28 ..     281     304 ..     279     315 .. 0.83
   2 ?   -0.1   0.0      0.75   1.8e+02      39      75 ..     605     641 ..     575     648 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00099
   TIGR02173   5 isGpPGsGkttvakilaeklslkl 28 
                 ++GpPG+Gkt +ak +a + ++ +
  MMETSP1061-20121228|7193_1 281 LTGPPGTGKTLLAKAIAGEAGVPF 304
                 68***************9988875 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.75
   TIGR02173  39 ekkgldlaeskkaeeekeiDkkiDrkikeiaekeknv 75 
                 +  g + +e+   e+ ++iD ++ r +    +++k++
  MMETSP1061-20121228|7193_1 605 RYGGSTGQEHASDETRNKIDTEVKRLTDASYKRAKDL 641
                 45566678999999*********99988777777776 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00018     0.042     140     345 ..     279     487 ..     271     502 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00018
   TIGR00362 140 lfiyGgvGlGKTHLlqAigneilkknpnakvvYvsaekFvndfvkalrekkieefkekyr.svDlLLiDDiqflag..kektqeeffhtfnall.......eknkqivltsDrapkelegleeRLkSRfewGLvvdieppdletrlaILkkkaeeeklelpeevlefiakkirsnvReLeGalnrvlayasltg.keitlelakealkdllkkeeke 345
                 l++ G  G GKT L +Ai+ e+         ++ s ++F + +v    ++  e f++  + s  ++ iD i  + g  k k q  +  t+n+ll       ++n  iv+ + +  ++l++   R   Rf+  ++v  + pd+  r +IL+  a++ kl+ + +   +   +   +  eL   +n+    as++g ++it+++ + a  ++l   e++
  MMETSP1061-20121228|7193_1 279 LLLTGPPGTGKTLLAKAIAGEAGVP-----FFFSSGSQFEEVYVGLGAKRVRELFEAAKKkSPCIIFIDEIDAVGGsrKLKDQSALKMTLNELLvqmdgfeDNNGIIVIGATNFMESLDQALLR-PGRFDKHITV--SLPDVGGRKEILEMYAKKTKLDADVDLNILARGTTGFSGAELHNLMNQAALKASVDGlASITMAVLEYAKDKILMGAERK 487
                 899***************9987666.....6888888888888887777777777765552667899*****9987225567888999999986444444356777788777666666654444.4799986665..669***************99999988766666667779999999999999999999989999988887777777433333 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00042       0.1      33      57 ..     273     297 ..     241     300 .. 0.77
   2 ?   -3.2   0.0       3.4   8.3e+02     286     338 ..     597     650 ..     535     661 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00042
   TIGR02397  33 nkiahayLfsGprGvGKTsiArilA 57 
                 +k+    L++Gp G+GKT +A+ +A
  MMETSP1061-20121228|7193_1 273 GKLPRGLLLTGPPGTGKTLLAKAIA 297
                 567899****************998 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 3.4
   TIGR02397 286 llrdlllvkktk.selleveeeeeeslkekaeklslekllellkilleaekelk 338
                 + +++ lv++   + + + ++e+++++++++++l++++ +++ ++l++ +k+ +
  MMETSP1061-20121228|7193_1 597 FSEEIGLVRYGGsTGQEHASDETRNKIDTEVKRLTDASYKRAKDLLTKYSKQHH 650
                 444555555544434444455555566666666666666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (783 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        49  (0.0119454); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.60u 0.18s 00:00:00.78 Elapsed: 00:00:00.49
# Mc/sec: 2109.13
//
Query:       MMETSP1061-20121228|7202_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 1050.84
//
Query:       MMETSP1061-20121228|7195_1  [L=1161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 3929.21
//
Query:       MMETSP1061-20121228|7192_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-16   58.4   0.5    1.6e-16   58.2   0.4    1.0  1  TIGR01169 rplA_bact: ribosomal protein L1


Domain annotation for each model (and alignments):
>> TIGR01169  rplA_bact: ribosomal protein L1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.2   0.4   3.9e-20   1.6e-16      10     222 ..      10     227 ..       2     229 .] 0.77

  Alignments for each domain:
  == domain 1    score: 58.2 bits;  conditional E-value: 3.9e-20
   TIGR01169  10 aekvdknklysleeaiell...kelstakfdetvevaiklg.vdprksdqqvRgsvvLPngtgksvrvlvfakgekaeeAkeaGAdlvGsedlie..k....ikkgeldfDvviatpdmmkkvgkl.gkvLGprgLmPnpktgtvtadvakavkelkkGkvefradkagiihvsigkvsfeeeklkenlea...lleaikkakPsaaKgkylkkialsstmgpgikv 222
                 ++ v++  +y+  e +++    k+ ++  f et+e +i+l+  dp + d+   g+  LP+  + +++  v+ + ++ e+A  +G d++  edl +  k    +kk    +D  +a+ +m+k++ +l g  L + g +P+   g   +d+++ ++e+k+  ++f+  k   ++v++g vs +++++  n +    +l+++ k++ +++ g     i+l stmgp+i++
  MMETSP1061-20121228|7192_1  10 EKAVNDILAYAAGENVTINgeeKSGKKRNFVETIEAQISLKnYDPVR-DKRFSGTFKLPTVPRPNLKCCVLGNAAHCEQADRIGVDFMSVEDLKKlnKnkklVKKLAKRYDFFMASDNMIKQIPRLlGPGLTKAGKFPTLIAG--GDDMQEKINEVKA-TIKFQMKKVMCLNVAVGNVSQDRKEIIVNTQLsanFLASLLKKQWQNIGG-----IYLKSTMGPSIQI 227
                 55666666777777777752224556788***********6156665.*******************************************986421222335666889**********999876425666666666655554..68*********98.7****************************986111555566666655555.....55668******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 1119.46
//
Query:       MMETSP1061-20121228|7203_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 421.11
//
Query:       MMETSP1061-20121228|7204_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 964.54
//
Query:       MMETSP1061-20121228|7208_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.38
# Mc/sec: 493.22
//
Query:       MMETSP1061-20121228|7210_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 431.96
//
Query:       MMETSP1061-20121228|7207_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1781.85
//
Query:       MMETSP1061-20121228|7212_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 975.57
//
Query:       MMETSP1061-20121228|7209_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 2111.83
//
Query:       MMETSP1061-20121228|7211_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0093   13.5   0.1      0.012   13.2   0.1    1.1  1  TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily


Domain annotation for each model (and alignments):
>> TIGR02980  SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   2.8e-06     0.012      95     188 ..      30     121 ..      22     134 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.8e-06
   TIGR02980  95 ateeLtqklgrePtveeiaeelevseeevvealeaaksysassldasvedddgdeialldtlgeedee.leeveeklalkellakLdererrill 188
                  + e++q+ +r+ + + + ++l+  +e ++e+++++k+    s ++s     g++++   +++ +d++ ++  e+++a ke  +++d+r+r ++ 
  MMETSP1061-20121228|7211_1  30 CHREFQQQKKRSSQRASLNQKLRARSERIAEIVNMKKN--GGSANSSSV-FGGSAATFGSSISGSDDTrTNYAERRKAEKESSSDIDNRHRAVMK 121
                 66799********************************9..566555555.5799999999998766650556688899999**********9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 819.43
//
Query:       MMETSP1061-20121228|7214_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00043   17.4   6.6    0.00043   17.4   4.6    2.5  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   1.0     0.059   2.4e+02     229     244 ..      79      94 ..       6     135 .. 0.52
   2 !   17.4   4.6   1.1e-07   0.00043      27      61 ..     236     270 ..     214     273 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.059
   TIGR00599 229 rlsfktvdksstgets 244
                  + +  + +++t+et 
  MMETSP1061-20121228|7214_1  79 NKTVMHHFEAKTNETI 94 
                 1111112222222222 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 1.1e-07
   TIGR00599  27 lRChvCkdffkaPvltsCsHtFCslCiRrcLseep 61 
                 + C +C+  f+ P++t+C H FC  C+ ++ +++ 
  MMETSP1061-20121228|7214_1 236 FACFLCRKAFDDPIVTTCCHYFCQGCLQDHFQKQK 270
                 67****************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       348  (0.0848367); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1308.24
//
Query:       MMETSP1061-20121228|7219_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   10.5   0.1      0.047   10.4   0.1    1.0  1  TIGR02128 G6PI_arch: bifunctional phosphoglucose/phosphomannose isomerase


Domain annotation for each model (and alignments):
>> TIGR02128  G6PI_arch: bifunctional phosphoglucose/phosphomannose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   1.1e-05     0.047      82     119 ..       4      41 ..       2      47 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.1e-05
   TIGR02128  82 TlsaveeakkkgakviaiTsgGkLeemakeegldviki 119
                 T+ av+ a+ ++  ++++T+ G +   a     dv+ +
  MMETSP1061-20121228|7219_1   4 TVAAVDAAVDAAVDIVVVTAAGEVLAAAAAADTDVAAV 41 
                 99**********************99999999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 311.97
//
Query:       MMETSP1061-20121228|7220_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.10s 00:00:00.17 Elapsed: 00:00:00.20
# Mc/sec: 217.78
//
Query:       MMETSP1061-20121228|7221_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 945.04
//
Query:       MMETSP1061-20121228|7217_1  [L=862]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (862 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 3447.72
//
Query:       MMETSP1061-20121228|7216_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.4e-114  379.6   0.0   5.3e-114  379.3   0.0    1.0  1  TIGR00069 hisD: histidinol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00069  hisD: histidinol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  379.3   0.0  1.3e-117  5.3e-114      16     393 .]      52     436 ..      34     436 .. 0.93

  Alignments for each domain:
  == domain 1    score: 379.3 bits;  conditional E-value: 1.3e-117
   TIGR00069  16 lleytekfdkv....kleslrvseeeleealeavdeelkealelaaeniekfhekqlpesv.eveteegvllgqkvrplervglYvPgGkaaypStvlmtavpAkvAgvkeivvvtPpkkdgkvnpavlaaakllgvdevykvGGaqaiaalayGt.....etvpkvdkivGPGniyVtaAKklvfgevgidmiaGPsEvlviadesanpelvaaDllsqaEHdedaqailvttseelaekveeeveeqleele..rkeiaekslekngaiilvddleealelsneyApEHLelqtkdpeellkkiknaGsvflGeytpealgdyvaGpnhvLPTsgtArfasglsvedFlkrisvqelskea.leelaeaveklaeaEgLeaHaeavevR 393
                 lle+++++ +v    k+++l vs e ++ea+++++++ ++al + + +i++f+e q+++ + +  + +g ++g++v p +++g+Y PgG++++pS+vlmtav+A+ Ag++++v+ +P+      +p +laaa+++g+d  +kvGGaqaia +a+G+     +++p++d+i+GPGn++VtaAK +v g++gidm+aGPsEvlvi+desa++++va+Dl++qaEHd  a+ail++ts+el+++++++v++q+++l+  ++++a ++l+ ++  +l++dl+e++++s+++ApEHLe+qtk++ + ++k  n+G +f+G  ++e lgdy aGpnh+LPT+gt r+++glsv +Fl+  ++++++ ++  + + ++ + +a++EgLe Ha+a+e+R
  MMETSP1061-20121228|7216_1  52 LLEVAKRLGDVdtdcKVDDLIVSPEACKEAYDNLNDTERAALINMHGRIKSFAEMQRASVTdTEMDIPGGKAGHTVSPCRAAGCYAPGGRYPLPSSVLMTAVTARAAGCPTVVLSSPK-----PAPITLAAAHVAGADVFLKVGGAQAIASMAFGLilpdgRSIPSCDVICGPGNMWVTAAKSIVNGKCGIDMLAGPSEVLVICDESADAAVVASDLIAQAEHDVVARAILLSTSAELIDAIDAQVNQQVHALPepNQSTALAALK-QSFAVLCSDLDECIRISDDIAPEHLEVQTKNSDADARKCANYGGLFIGVGAAEVLGDYGAGPNHTLPTGGTGRYTGGLSVFNFLRIRTWMRVDDTKaSQGMVDDSIVMARLEGLEGHARAAEQR 436
                 5667777766655568899*************************************998752555789*************************************************9.....59*****************************975555579******************************************************************************************8557999999999.799999**************************************************************************************876515678999****************9988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2141.16
//
Query:       MMETSP1061-20121228|7222_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 1114.57
//
Query:       MMETSP1061-20121228|7218_1  [L=660]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (660 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.28
# Mc/sec: 3111.17
//
Query:       MMETSP1061-20121228|7225_1  [L=872]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 4110.52
//
Query:       MMETSP1061-20121228|7229_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|7230_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 971.44
//
Query:       MMETSP1061-20121228|7231_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 509.96
//
Query:       MMETSP1061-20121228|7234_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1061-20121228|7237_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 731.02
//
Query:       MMETSP1061-20121228|7236_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 1278.64
//
Query:       MMETSP1061-20121228|7243_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2835.32
//
Query:       MMETSP1061-20121228|7238_1  [L=716]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-233  774.8   1.8   1.2e-233  774.6   1.3    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   8.1e-168  557.4   0.5   9.9e-168  557.1   0.3    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    2.7e-13   47.5   0.0    6.7e-13   46.2   0.0    1.7  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    8.9e-13   46.1   0.4    2.2e-10   38.2   0.2    2.5  2  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
      7e-07   26.5   0.5      0.001   16.1   0.0    2.5  3  TIGR01174 ftsA: cell division protein FtsA
    0.00062   16.2   0.0     0.0015   15.0   0.0    1.6  1  TIGR01312 XylB: xylulokinase
     0.0038   14.4   0.8      0.036   11.2   0.0    2.7  3  TIGR03706 exo_poly_only: exopolyphosphatase


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  774.6   1.3  2.1e-236  1.2e-233       3     592 ..      74     683 ..      72     687 .. 0.93

  Alignments for each domain:
  == domain 1    score: 774.6 bits;  conditional E-value: 2.1e-236
   TIGR02350   3 iGidLGttnsvvavleggepvvianaeGarttPsvvafkkd....gerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen.evkveve........dkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsitita.ssglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkea.gdkleeeekekiekaveelkealkeedveek..ikakteelekaleklae 592
                 iGidLGtt s+v v+  ++  + an++G+r tPs+vaf kd    g rlvG++ak+qa  np  t++ +krliGr+++   v++++k  py++ + +n +  v++         + ++tpee+s +iL+k+k++aeaylG +v++av+tvPayfndaqrqatkdaG+iaGl+v+r+inePtaaa+ayGldk++++e+ilvfdlGGGtfdv++l +++gvfev++t+G+t+LGG+dfd+++++y +++fk+++gid+skdk a+qrl++  e+ak  Ls++++t i+   ++       +++l+l+rakfeel  dl+++t +pv+++lkd++ls+s++d++ilvGGstriP vq l+ +++g k+ nks+nPde+va Gaa+qgg+l+g+     kdvlLldv PLsLgiet Ggv+t+li+r ttiP+kksq+fst +dnqp v+i+v+ Ger +++ n+ lg+feL+gippaPrGvpq+ev+fd+danGils+ a+dk+tg+e+s+tit+ ++ lseeeiermv+eae++aeed k+k +++arne+++++y+ +++++e+ + kl+e+ek+++++av+e  + l+++ ++ek   +ak++e+e+ ++ + +
  MMETSP1061-20121228|7238_1  74 IGIDLGTTYSCVGVWRNDRVDICANEQGNRITPSYVAFPKDaassGGRLVGDAAKNQASQNPTGTFFDVKRLIGRNFDdsTVQKDKKLFPYEIAKDKNgKPIVRLPkeigskypKSDFTPEEVSGMILRKMKETAEAYLGTEVKHAVVTVPAYFNDAQRQATKDAGTIAGLKVERVINEPTAAAIAYGLDKQDREENILVFDLGGGTFDVTLLSIDNGVFEVLATSGNTHLGGEDFDQRLMEYCISQFKRKSGIDISKDKRAVQRLRKQCENAKRTLSTQTSTMIDCEALSNG----EDFSLTLSRAKFEELNLDLFKKTLTPVTQVLKDSGLSKSQVDQIILVGGSTRIPRVQSLLSDFFGgKKLNKSINPDEAVAYGAAVQGGILSGDaaeaTKDVLLLDVAPLSLGIETAGGVMTTLIKRGTTIPVKKSQIFSTYADNQPGVNIQVFEGERGMTKSNRLLGQFELSGIPPAPRGVPQVEVSFDVDANGILSIGAHDKGTGREESLTITSeKGRLSEEEIERMVREAEEFAEEDAKEKAKIQARNELEAYLYNLKNSINESlEGKLSEDEKDQLNTAVNEGLDWLEDHPAAEKeeCDAKQKEVEQIANPILK 683
                 9*************************************875333389******************************966799999*******9988765444322112222226789************************************************************************************************************************************************************************9877654....56899***********************************************************98**************************988888*******************************************************************************************************************972578********************************************9963678***************99999988766532477777777777666655 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  557.1   0.3  1.7e-170  9.9e-168       2     585 ..      74     686 ..      73     697 .. 0.91

  Alignments for each domain:
  == domain 1    score: 557.1 bits;  conditional E-value: 1.7e-170
   TIGR01991   2 vGiDlGttnslvaavregkaevlkdeegrvllpsvvrylee....gkvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledakgem..vrlktaqg......evtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil....kkagleaelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepl.tdldPdevvAlGAalqadlLaknkrke..dllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsyg.LsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadkd.Llseeelkaikaaleklekaleed...daeaikaaiealeeaskefaarrm 585
                 +GiDlGtt+s v + r++++ +  +e+g+ + ps v + ++    g+  vG++ak++a ++p+ t   vkRl+Gr  +d  v+k ++  pye++++k++   vrl ++ g      + tP evs  iL+k+k+ ae  lg+e+k+av+tvPAYF+daqrqatkdA+ +agl+v R++nePtaAA+AYGldk  +e+ ++v+DLGGGtFDv +L +++GvFevlat+G+++LGG+DfD++l+++ +    +k+g++ + +k  ++ l k+ ++ak++L+++++++++++   +g+d++ +lsr+++eel  +l kktl++v+++l+d+gl+++++++++lvGGstr+p v++ ++++F+ + l ++++Pde vA GAa+q  +L+++ ++   d+lLlDv PLsLG+et GG++  +i R ttiPv+k+q F ty D+q +++i+v  GeR + + +r L++FeL+gipp + G+ +++v f+vDa+G+ls+ a++k tg e+++++    g Ls+eeie+m++++ + aeeD++++a+  ++ e e  l  l++++++  +  lse+e+ ++++a+++  + le++   + e+ +a+ +++e+ ++ +++r  
  MMETSP1061-20121228|7238_1  74 IGIDLGTTYSCVGVWRNDRVDICANEQGNRITPSYVAFPKDaassGGRLVGDAAKNQASQNPTGTFFDVKRLIGRNFDDstVQKDKKLFPYEIAKDKNGKpiVRLPKEIGskypksDFTPEEVSGMILRKMKETAEAYLGTEVKHAVVTVPAYFNDAQRQATKDAGTIAGLKVERVINEPTAAAIAYGLDKqDREENILVFDLGGGTFDVTLLSIDNGVFEVLATSGNTHLGGEDFDQRLMEYCIsqfkRKSGIDISKDKRAVQRLRKQCENAKRTLSTQTSTMIDCEAlsNGEDFSLTLSRAKFEELNLDLFKKTLTPVTQVLKDSGLSKSQVDQIILVGGSTRIPRVQSLLSDFFGGKKLnKSINPDEAVAYGAAVQGGILSGDAAEAtkDVLLLDVAPLSLGIETAGGVMTTLIKRGTTIPVKKSQIFSTYADNQPGVNIQVFEGERGMTKSNRLLGQFELSGIPPAPRGVPQVEVSFDVDANGILSIGAHDKGTGREESLTITSEKGrLSEEEIERMVREAEEFAEEDAKEKAKIQARNELEAYLYNLKNSINESLEgKLSEDEKDQLNTAVNEGLDWLEDHpaaEKEECDAKQKEVEQIANPILKRAY 686
                 8*************************************88633337889**************************99874478888999****98887651266666655322223579***********************************************************************9678999*********************************************9987776788899999999999999***************9998876679*****************************************************************98888357*******************886654449*****************************************************************************************************************976644********************************************9987658**********9998866655543111566677777888888877777655 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.89   5.2e+02       5      19 ..      74      88 ..      73     136 .. 0.52
   2 !   46.2   0.0   1.1e-15   6.7e-13      99     321 ..     217     448 ..     154     455 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.89
   TIGR00904  5 lgidlGtantlvyvk 19
                +gidlGt+   v v 
  MMETSP1061-20121228|7238_1 74 IGIDLGTTYSCVGVW 88
                789999988776553 PP

  == domain 2    score: 46.2 bits;  conditional E-value: 1.1e-15
   TIGR00904  99 pkvlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveeptgs.mvvdiGGGttevavisl.gGi....vvsksirvaGdeldeaiikyirrkynlliG......ertaekikieiGsayaeendeeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllsketk.lpvivaedpllavalG 321
                 ++ +++vP+   + +r+a k++ + aG +   +i+ep aaai  +l  ++   + +v d+GGGt +v+++s+ +G+     +s    ++G+++d+ +++y  ++++   G      +r+ ++++++  +a+ + + +++++ +  + l +G   +l+l+  +  e   +  ++    v ++l+++   l++  v++ i+l GG + +  ++ lls+  +  +   + +p +ava G
  MMETSP1061-20121228|7238_1 217 KHAVVTVPAYFNDAQRQATKDAGTIAGLKVERVINEPTAAAIAYGLDKQDREENiLVFDLGGGTFDVTLLSIdNGVfevlATSGNTHLGGEDFDQRLMEYCISQFKRKSGidiskdKRAVQRLRKQCENAKRTLSTQTSTM-IDCEALSNGEDFSLTLSRAKFEELNLDLFKKTLTPVTQVLKDS--GLSKSQVDQ-IILVGGSTRIPRVQSLLSDFFGgKKLNKSINPDEAVAYG 448
                 3489*******************************************99987772578*************9446522114577799*********999976666543331111224667888888888888766555544.7788888888888888888888888888888888888888765..577777775.788888888888888888764313344445555666665 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.2   3.8e-13   2.2e-10      44     143 ..     199     304 ..     191     306 .. 0.88
   2 !    5.1   0.0    0.0049       2.8     176     226 ..     391     439 ..     375     451 .. 0.76

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 3.8e-13
   TIGR02529  44 eivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlqlk......ngavvdvGGGttGisilkkGkviysadeatGGthl 143
                  i++++k+++e  lG+e+++a ++vP   ++ + +++ +    aGl+v +v++ePtaaa +  l+      n  v d+GGGt  +++l   + ++    + G thl
  MMETSP1061-20121228|7238_1 199 MILRKMKETAEAYLGTEVKHAVVTVPAYFNDAQRQATKDAGTIAGLKVERVINEPTAAAIAYGLDkqdreeNILVFDLGGGTFDVTLLSIDNGVFEVLATSGNTHL 304
                 589*******************************************************999888533333256899*********999988888888877787776 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0049
   TIGR02529 176 kPvvekmaeivkkhiekqkvkdlylvGGassfsefedvfekel.glevikpa 226
                 +Pv++ +     + + k++v+++ lvGG++ +++++++++  + g+++ k+ 
  MMETSP1061-20121228|7238_1 391 TPVTQVLK---DSGLSKSQVDQIILVGGSTRIPRVQSLLSDFFgGKKLNKSI 439
                 55555443...356899********************999887555555555 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.7e-06     0.001     166     217 ..     238     290 ..     212     309 .. 0.83
   2 !    8.1   0.0   0.00046      0.27     264     339 ..     357     431 ..     323     441 .. 0.77
   3 ?   -3.8   0.0       1.8   1.1e+03      91     111 ..     580     601 ..     558     608 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.7e-06
   TIGR01174 166 averaglevdnivlsslAsakav.LtedEkelGvvlidiGggttdiavytegs 217
                 a + agl+v++++ ++ A+a+a  L+++++e  +++ d+Gggt d+++ + ++
  MMETSP1061-20121228|7238_1 238 AGTIAGLKVERVINEPTAAAIAYgLDKQDREENILVFDLGGGTFDVTLLSIDN 290
                 556699***************966**********************9876555 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00046
   TIGR01174 264 eesveipsvgereerelskkelaeiieaRveEileivkqkelkksgl.keelaagivltGGaaqlkgikelaekvfd 339
                 +   e  s ge+ + +ls+++  e      + +l+ v+ + lk+sgl k+++   i+l GG +++  +++l ++ f 
  MMETSP1061-20121228|7238_1 357 MIDCEALSNGEDFSLTLSRAKFEELNLDLFKKTLTPVT-QVLKDSGLsKSQV-DQIILVGGSTRIPRVQSLLSDFFG 431
                 23334556679999999999999999999999*****7.9*******55555.55****************999885 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 1.8
   TIGR01174  91 ikdk.evtqediervleaakav 111
                 +++k  + +e+ier++ +a+  
  MMETSP1061-20121228|7238_1 580 TSEKgRLSEEEIERMVREAEEF 601
                 3333478888899888888765 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.6e-06    0.0015     387     442 ..     403     460 ..     370     472 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.6e-06
   TIGR01312 387 kglkikeirliGGGaksevwrqiladilg.levvvpe.eeegaalGaAilAaialgek 442
                 +  ++++i l+GG ++ + ++ +l d +g +++++    +e++a+GaA+++ i +g++
  MMETSP1061-20121228|7238_1 403 SKSQVDQIILVGGSTRIPRVQSLLSDFFGgKKLNKSInPDEAVAYGAAVQGGILSGDA 460
                 3467899*********************72456555459***********99988753 PP

>> TIGR03706  exo_poly_only: exopolyphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   6.1e-05     0.036      88     142 ..     232     286 ..     186     306 .. 0.85
   2 ?   -1.2   0.0      0.35     2e+02     175     208 ..     386     418 ..     370     423 .. 0.76
   3 ?   -0.7   0.1      0.26   1.5e+02      42      63 ..     582     603 ..     577     618 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.1e-05
   TIGR03706  88 eeflkevekelgleievisGeeEArliylgvastlpeadglvvDiGGgStElilv 142
                 ++ +k + ++ gl++e +  e  A  i++g  ++ +e++ lv D+GGg  +++l+
  MMETSP1061-20121228|7238_1 232 RQATKDAGTIAGLKVERVINEPTAAAIAYGLDKQDREENILVFDLGGGTFDVTLL 286
                 56678888999999998888888999***********999*********999985 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.35
   TIGR03706 175 lkkaekaireelasakelkkakgkeligvgGtir 208
                 +kk+ + + + l++ + l+k + +++i+vgG+ r
  MMETSP1061-20121228|7238_1 386 FKKTLTPVTQVLKD-SGLSKSQVDQIILVGGSTR 418
                 55556666666776.678888**********987 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.26
   TIGR03706  42 etgrLseeaieraleaLkrFae 63 
                 e+grLsee ier ++  ++Fae
  MMETSP1061-20121228|7238_1 582 EKGRLSEEEIERMVREAEEFAE 603
                 5667777777777776666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 2625.12
//
Query:       MMETSP1061-20121228|7241_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-41  140.7   0.1    2.8e-21   73.9   0.0    3.2  2  TIGR00174 miaA: tRNA dimethylallyltransferase
  ------ inclusion threshold ------
      0.025   12.1   0.0       0.05   11.1   0.0    1.5  1  TIGR00017 cmk: cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR00174  miaA: tRNA dimethylallyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.9   0.0   1.4e-24   2.8e-21       1      82 [.       9      90 ..       9      98 .. 0.95
   2 !   56.3   0.1   3.1e-19   6.4e-16      88     282 ..     145     383 ..     140     388 .. 0.70

  Alignments for each domain:
  == domain 1    score: 73.9 bits;  conditional E-value: 1.4e-24
   TIGR00174  1 vivlvGptavGKsqlaiqlakklnaeiisvDslqiYKdldIgtaKpsleerkaipHhlldildpseeysaaefkeealeaia 82
                v+v++Gpta+GKs++a  + ++ ++ i+s+Ds+q Y++++Ig++Kps eer++ pH l+d+ d  e+y+aae++e+a   i+
  MMETSP1061-20121228|7241_1  9 VVVIAGPTAAGKSDVAARVCSQQKGMIVSADSVQAYRGVQIGANKPSTEEREETPHILIDVADHVENYNAAEWREDAIFCIQ 90
                79*************************************************************************9987766 PP

  == domain 2    score: 56.3 bits;  conditional E-value: 3.1e-19
   TIGR00174  88 gkipllvGGtalYlkalleglsstpsaedklireeleeeaeekgkdvly....k...eLkkvDPeaaakihpndtrRvkraLEvfyatgkklsellkeqkk.....................elkydivllalalereaLker.ieqRvdemlesGlleEvkkLyekyskidlpslkaiGykelleyleg............evsledlie....rikkntrqyAKRQltwlrkksavlw 282
                 + +p++ GGt++Yl+ l++g+++   ++   ++ + ++ +e +++d+ y    k      k+  e+a+++   d +R++r+LE+  +  ++  + ++e+ +                     +l +d+  ++l  +    ++r +++R ++ml +Gll+E   L   +      + +aiGy++ l yl++            + + ed+ e    + +++tr+yAK+Q+ w+rk+++ ++
  MMETSP1061-20121228|7241_1 145 KVLPVVCGGTMMYLQWLVHGRPDAMRPTPTAVEISYKTIQEYQDNDNDYegavKhvsSFDKIFAERAQQLTTGDWYRLRRTLEIALTVEEERKKSQDESDSssrvdslveklysgqregslaSLGFDVRCFFLCPDDRMSHTRvVDKRCEQMLTRGLLNETTDLSLSGCL-PEMAERAIGYRQTLDYLNRehkktdgnegegTFTEEDAFEfylnEFTTATRRYAKKQMAWFRKDKEFMF 383
                 56899***************9998887777777777776666666665522223111444555677888999************987654433333332220011111111111111111114668889999996666667772689********************999.67788*************99999****99995666665432222889****************998766 PP

>> TIGR00017  cmk: cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.4e-05      0.05       4      55 ..       9      62 ..       7     133 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.4e-05
   TIGR00017  4 iiaiDGPsaaGKstvakalaeklgykyl..dsGalYRvlalvalqnkvdleded 55
                ++ i GP+aaGKs va ++ ++ + + +  ds + YR +   a + +++  +e+
  MMETSP1061-20121228|7241_1  9 VVVIAGPTAAGKSDVAARVCSQQKGMIVsaDSVQAYRGVQIGANKPSTEEREET 62
                67899***********99988766555412667778887777777666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.11s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 1644.79
//
Query:       MMETSP1061-20121228|7244_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 496.53
//
Query:       MMETSP1061-20121228|7239_1  [L=773]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 2915.07
//
Query:       MMETSP1061-20121228|7248_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 332.84
//
Query:       MMETSP1061-20121228|7247_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 933.35
//
Query:       MMETSP1061-20121228|7251_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1061-20121228|7249_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-28   96.3   0.1    5.4e-09   33.7   0.0    3.2  3  TIGR01826 CofD_related: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR01826  CofD_related: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.3e-12   5.4e-09       4      73 ..     185     261 ..     182     271 .. 0.82
   2 !   32.9   0.0   2.4e-12   9.6e-09      69     146 ..     303     381 ..     286     416 .. 0.87
   3 !   26.1   0.0   2.9e-10   1.2e-06     172     286 ..     446     565 ..     435     590 .. 0.64

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.3e-12
   TIGR01826   4 iGGGtGlsvllkglkkkdseitaiVtvaDdGGssGrlRkeldvlapGDlrnvlaaLsdee.......sllekllqyR 73 
                 + GGt ++ l + l +++++   ++t  D+GGss ++R+  ++l+ GD+rn l+aLsd++       + + +++ +R
  MMETSP1061-20121228|7249_1 185 FSGGTAIKDLSACLTNYTHNSIHLITPFDSGGSSAEIRRGFNMLSVGDIRNRLLALSDRNestmrnnPQVIEFFAHR 261
                 67*******************************************************98743333333344455555 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 2.4e-12
   TIGR01826  69 llqyRFkedgelsGhslGNLllaa.lselsgsfleAikelskiLkvkgkvlPaseepvkleAeledgkvvkGesniakk 146
                  ++ R  +d +l+G s+GNL++++ + e + ++++Ai  ++k+L vkg   P + +++++    +dg++v G+  ++  
  MMETSP1061-20121228|7249_1 303 WFSDRMPRDFDLRGASIGNLIITGcFLEHNRDIVTAIFIVTKFLGVKGFCRPLTAANLHIRTLYADGREVVGQHLMNLA 381
                 5778999999*************84578899*****************************************9887643 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 2.9e-10
   TIGR01826 172 eadliilGPGSlyTSilpnllvpeiaealkeskAkkvyvanlmtepgetegfsvedhvevler.......hlgkkvidvvlvntekveeevlkkyeeeeseqveldaeelekegieviaedl 286
                  adli +  GS++ Si+ nll +++++a+ e k +kvy+ n   +p  t   ++ + v+ +         h +    + v+v  e++ + vl   + + +  v +d++ +e++g++vi   l
  MMETSP1061-20121228|7249_1 446 VADLICFPMGSFFASIIVNLLPTGVGRAIVERKCPKVYIPNTGYDPEMTGC-TIVECVSLIIDmvradpcHSEGGETESVVVPVEDILNFVLLD-TANCEYSVPVDKAAIENLGVTVIDVPL 565
                 59***************************************9988765543.333333322220001111444455555666666655555543.344445555555666666666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.10s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1902.57
//
Query:       MMETSP1061-20121228|7250_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-12   42.9   0.0    1.1e-11   42.5   0.0    1.2  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   2.7e-15   1.1e-11      43     179 ..      29     181 ..      13     189 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 2.7e-15
   TIGR03634  43 altiaGsvgdaqslvrllkaeaklyel.rrkkkisvkalatllsnllksskflpflvqllvgGvde...eg.....pklyslDplGsiiedkytatGsGspvalgvLedeYee.......dlsleeakklavkaiksaieRDvasGdgidvvv 179
                  +  +G  +d  +l r+++ae++  +   +  + + + +a+lls+ l++++ +p+++ ++v+G+d    +g      k y+ D++Gs+     +a+G+G ++   +L+  ++        d + +ea++   ka +s  eR++  Gd++ + v
  MMETSP1061-20121228|7250_1  29 WIGSSGCSTDCCQLQRTVRAEVRAASYfGQIARSNPDRVANLLSQTLYERRGFPYYAFCVVSGLDGpetNGgngvcGKAYVYDAIGSYERVAVAAAGTGRELLQPILDRMFRAtsdnrrvDGTAKEAVETLCKAYRSVSEREIGVGDKLVLHV 181
                 5778999***************998751566778899***************************963222222333478******************************997522222225578999********************876543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1159.21
//
Query:       MMETSP1061-20121228|7254_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 1378.55
//
Query:       MMETSP1061-20121228|7258_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 710.23
//
Query:       MMETSP1061-20121228|7253_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-56  188.2   1.8    8.7e-56  187.2   1.3    1.4  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    4.7e-28   95.7   0.6    2.4e-27   93.4   0.4    2.0  1  TIGR01393 lepA: GTP-binding protein LepA
    1.9e-25   86.9   2.2    2.7e-24   83.1   1.5    2.0  1  TIGR00490 aEF-2: translation elongation factor aEF-2
    3.7e-22   76.0   0.0      6e-22   75.4   0.0    1.2  1  TIGR00484 EF-G: translation elongation factor G
    6.7e-21   72.6   0.5    2.4e-14   51.3   0.1    2.3  2  TIGR00231 small_GTP: small GTP-binding protein domain
    1.9e-20   70.6   0.3    5.9e-12   42.6   0.0    2.1  2  TIGR00503 prfC: peptide chain release factor 3
    2.5e-17   60.6   0.1    4.4e-12   43.3   0.0    2.2  2  TIGR00487 IF-2: translation initiation factor IF-2
      4e-15   53.3   0.8    5.1e-11   39.8   0.0    2.1  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
      2e-14   51.0   0.8    5.9e-09   32.9   0.1    2.2  2  TIGR00485 EF-Tu: translation elongation factor Tu
    9.8e-13   45.2   0.2    1.1e-05   21.9   0.0    2.1  2  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    4.7e-12   42.9   0.2    1.1e-06   25.1   0.0    2.2  2  TIGR00491 aIF-2: translation initiation factor aIF-2
    1.7e-10   38.5   0.4    7.9e-06   23.1   0.0    2.4  3  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    8.5e-07   26.2   1.3     0.0015   15.4   0.0    2.1  2  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    8.4e-06   22.9   0.0    0.00085   16.3   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.004   13.9   0.2      0.015   12.0   0.0    1.9  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
     0.0048   14.4   0.1      0.035   11.6   0.0    2.4  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0092   13.2   0.1       0.31    8.2   0.0    2.3  2  TIGR00436 era: GTP-binding protein Era


Domain annotation for each model (and alignments):
>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.2   1.3   3.6e-58   8.7e-56       1     173 [.      69     286 ..      69     294 .. 0.82

  Alignments for each domain:
  == domain 1    score: 187.2 bits;  conditional E-value: 3.6e-58
   TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlre..k............eeveervmDsndlererGitilakntavkykd.......................tkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvd....evfdLfvelgaddeqldf....pvvyasakeGvasleee 173
                 +rn+aiiahvDhGkttlvD+lL+ + + ++  +            e+ ++r++D  dle+erGiti +k+t ++                          t +n+vDtPGhaDf Gev+r+ls+vdgv l+vDa eGp++qt++vl++al+++l ++vv+nk+Dr  +  + v      +  +L+ +lga+ eq+ f    +v yasa++G+ +++ +
  MMETSP1061-20121228|7253_1  69 VRNVAIIAHVDHGKTTLVDQLLRSAAASTAaaNgssdgsksggsgESDTDRLLDCGDLEKERGITITSKVTRIDGYTpssssdddddasnntntnkkntnTILNLVDTPGHADFCGEVDRILSLVDGVCLVVDAGEGPMAQTKYVLSRALQADLPIVVVLNKVDRRVSFDKVVEGdteiSLEELMEQLGASREQIAFslenAVFYASARDGWVTQDLD 286
                 6**********************876433211211111222222255689***********************85444899999**************99899**************************************************************8765555543222234589**********9994433479********998865 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.4   0.4   9.8e-30   2.4e-27       3     136 ..      69     235 ..      67     294 .. 0.71

  Alignments for each domain:
  == domain 1    score: 93.4 bits;  conditional E-value: 9.8e-30
   TIGR01393   3 irnfsiiahidhGkstladrllektkav...............serelkeqlldsldlererGitikaqavrlk.yk.....akdg..............eeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPs 136
                 +rn++iiah+dhGk+tl+d+ll+++ a                s  + +++lld  dle+erGiti ++  r++ y+     +  +              ++ +lnl+dtPGh+df  ev r l+  +G+ l+vda  G  aqt   +  al+ dl i+ v+nk+d   
  MMETSP1061-20121228|7253_1  69 VRNVAIIAHVDHGKTTLVDQLLRSAAAStaaangssdgsksggSGESDTDRLLDCGDLEKERGITITSKVTRIDgYTpssssD--DdddasnntntnkknTNTILNLVDTPGHADFCGEVDRILSLVDGVCLVVDAGEGPMAQTKYVLSRALQADLPIVVVLNKVDRRV 235
                 8*********************976543111122211111111223457899****************999996553222211..1112222222222225678*************************************************************9643 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   1.5   1.1e-26   2.7e-24      13     153 ..      63     236 ..      58     246 .. 0.71

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 1.1e-26
   TIGR00490  13 mekpefirnigivahidhgkttlsdnllagagmiseelag...........e...qlfldfdeqeqergitidaanvsmvhey....................egneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrlin 153
                 + k   +rn+ i+ah+dhgkttl d+ll  a   ++   g           e   ++ ld  + e+ergiti++  v+ +  y                    +  + ++nl+dtpgh df g+v r +  vdg+ +vv+a eg m qt+ vl +al+ ++  v+ +nkvdr + 
  MMETSP1061-20121228|7253_1  63 LRKRSGVRNVAIIAHVDHGKTTLVDQLLRSAAASTAAANGssdgsksggsgEsdtDRLLDCGDLEKERGITITSK-VTRIDGYtpssssdddddasnntntnkKNTNTILNLVDTPGHADFCGEVDRILSLVDGVCLVVDAGEGPMAQTKYVLSRALQADLPIVVVLNKVDRRVS 236
                 6678889********************9665543332222111111111222333689**************753.3333333111111111111111111112335789**************************************************************875 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.4   0.0   2.5e-24     6e-22      10     146 ..      69     239 ..      63     270 .. 0.82

  Alignments for each domain:
  == domain 1    score: 75.4 bits;  conditional E-value: 2.5e-24
   TIGR00484  10 lrniGisahidaGktttterilfytgkihkigevh........dGaa....tmdwmeqekerGititsaattvewkd.......................frinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflk 146
                 +rn+ i ah+d Gktt+ +++l  ++ + +  +           G++     +d  ++ekerGitits  t +                             +nl+dtPGh df  ev+r l ++dG  +v+da  G  +q++ v  +a + ++P +v +nk+d+    f k
  MMETSP1061-20121228|7253_1  69 VRNVAIIAHVDHGKTTLVDQLLRSAAASTAAANGSsdgsksggSGESdtdrLLDCGDLEKERGITITSKVTRIDGYTpssssdddddasnntntnkkntnTILNLVDTPGHADFCGEVDRILSLVDGVCLVVDAGEGPMAQTKYVLSRALQADLPIVVVLNKVDRRV-SFDK 239
                 7*********************98877665543322222333333332122577889**************9987666888999**************99899*************************************************************964.3444 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   7.1e-07   0.00017       4      33 ..      70      99 ..      67     107 .. 0.86
   2 !   51.3   0.1   9.8e-17   2.4e-14      41     141 ..     160     250 ..     125     269 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 7.1e-07
   TIGR00231  4 ikivivGhvdvGKstLlnsllknkisites 33
                ++++i++hvd+GK+tL ++ll+   + t++
  MMETSP1061-20121228|7253_1 70 RNVAIIAHVDHGKTTLVDQLLRSAAASTAA 99
                69*******************998777665 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 9.8e-17
   TIGR00231  41 yvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklna 141
                 ++t+    ++ ++ +nl+DT+G++df         ev+r+l+ vd+v lv+d+ eg+++qtk +   a +++ pi++v+nK+D + ++++ v  + + +  
  MMETSP1061-20121228|7253_1 160 TNTN---KKNTNTILNLVDTPGHADF-------CGEVDRILSLVDGVCLVVDAGEGPMAQTKYVLSRALQADLPIVVVLNKVDRRVSFDKVVEGDTEISLE 250
                 3332...23333789***********.......****************************999888888***************9888887777665544 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   2.3e-09   5.5e-07       4      76 ..      62     142 ..      59     146 .. 0.74
   2 !   42.6   0.0   2.5e-14   5.9e-12      78     146 ..     167     235 ..     159     265 .. 0.92

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 2.3e-09
   TIGR00503   4 llkevdkrrtfaiishpdaGkttltekvllyGnaiqea..Gavkargsqrsaksd......wmemekqrGisittsvlqfd 76 
                 +l++ +  r+ aii+h d Gkttl +++l    a   a  G+  + +s  s +sd        ++ek+rGi+it+ v ++d
  MMETSP1061-20121228|7253_1  62 VLRKRSGVRNVAIIAHVDHGKTTLVDQLLRSAAASTAAanGSSDGSKSGGSGESDtdrlldCGDLEKERGITITSKVTRID 142
                 566666779******************99988776655346777777776777652221114589***********98765 PP

  == domain 2    score: 42.6 bits;  conditional E-value: 2.5e-14
   TIGR00503  78 rdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdi 146
                  ++++nl+dtpGh df  +  r l+ vd + +v+da  G   +t+ +l  +   dlpi+  lnk+dr +
  MMETSP1061-20121228|7253_1 167 TNTILNLVDTPGHADFCGEVDRILSLVDGVCLVVDAGEGPMAQTKYVLSRALQADLPIVVVLNKVDRRV 235
                 5789**************************************************************976 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.1e-06    0.0017      85     115 ..      65      97 ..      28     104 .. 0.74
   2 !   43.3   0.0   1.8e-14   4.4e-12     131     215 ..     165     248 ..     160     270 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.1e-06
   TIGR00487  85 erpPv..vtimGhvDhGktsLLdsirktkvaeg 115
                 +r+ v  v+i+ hvDhGkt+L+d++ +   a++
  MMETSP1061-20121228|7253_1  65 KRSGVrnVAIIAHVDHGKTTLVDQLLRSAAAST 97 
                 444444499**************9866555544 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 1.8e-14
   TIGR00487 131 kedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpeanpDrvkqelseyg 215
                 k+ +  + ++DtPGh+ f     r     D v lvv a +G + qt+  ++ a +a+ Pi+v++nk+D+  +  D+v +  +e  
  MMETSP1061-20121228|7253_1 165 KNTNTILNLVDTPGHADFCGEVDRILSLVDGVCLVVDAGEGPMAQTKYVLSRALQADLPIVVVLNKVDRR-VSFDKVVEGDTEIS 248
                 566667899***********************************************************86.66888877655544 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   4.9e-05     0.012       2      24 ..      71      93 ..      70     100 .. 0.84
   2 !   39.8   0.0   2.1e-13   5.1e-11      49     138 ..     168     259 ..     162     293 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.9e-05
   TIGR00475  2 iiataGHvDHGKttLlkaltgid 24
                ++a+  HvDHGKttL+ +l   +
  MMETSP1061-20121228|7253_1 71 NVAIIAHVDHGKTTLVDQLLRSA 93
                589999***********997655 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 2.1e-13
   TIGR00475  49 dkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDr.vdeeevk..evEeelkeileeeefl 138
                 ++ l+l+D PGH  f  ++   ++ +d++ Lvvda eG++aqtk  L  + + +++ ++vvl+K+Dr v  ++v    +E  l+e++e+ +  
  MMETSP1061-20121228|7253_1 168 NTILNLVDTPGHADFCGEVDRILSLVDGVCLVVDAGEGPMAQTKYVLSRALQADLP-IVVVLNKVDRrVSFDKVVegDTEISLEELMEQLGAS 259
                 6899****************************************************.*********833323332113444445554444433 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.4e-06   0.00058      13      66 ..      70     137 ..      58     148 .. 0.61
   2 !   32.9   0.1   2.4e-11   5.9e-09      77     164 ..     171     259 ..     154     292 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.4e-06
   TIGR00485  13 vnvgtighvdhgkttl......taaittvla.......kegkaaakkyde.idkapeekargitinta 66 
                  nv  i hvdhgkttl      +aa +t+ a       k+g++   + d  +d    ek+rgiti++ 
  MMETSP1061-20121228|7253_1  70 RNVAIIAHVDHGKTTLvdqllrSAAASTAAAngssdgsKSGGSGESDTDRlLDCGDLEKERGITITSK 137
                 49*************94444442444443331111111233334445555357778899999999765 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 2.4e-11
   TIGR00485  77 yahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdl.vddeelle.lvelevrellseydfp 164
                    vd pghad+  ++    + +dg  lvv a +gpm qt+  +  a q  +p +vv lnkvd  v+ ++++e   e+ + el+++ + +
  MMETSP1061-20121228|7253_1 171 LNLVDTPGHADFCGEVDRILSLVDGVCLVVDAGEGPMAQTKYVLSRALQADLP-IVVVLNKVDRrVSFDKVVEgDTEISLEELMEQLGAS 259
                 5679*************************************999999999999.67779***9535555555426788888888876655 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   6.9e-08   1.7e-05       4      74 ..      66     135 ..      63     145 .. 0.81
   2 !   21.9   0.0   4.6e-08   1.1e-05      86     184 ..     170     265 ..     154     275 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 6.9e-08
   TIGR00483   4 ekehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtid 74 
                 +  + nva+i hvd+gk+tlv +ll +a a      +     ++  g +  +   +ld    e+erg+ti 
  MMETSP1061-20121228|7253_1  66 RSGVRNVAIIAHVDHGKTTLVDQLLRSAAAST-AAANGSSDGSKSGGSGESDTDRLLDCGDLEKERGITIT 135
                 55667******************998776654.445556677777888999999***************96 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 4.6e-08
   TIGR00483  86 evtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgik.qlivainkmds.vnydeekfeelkkevsellkkvgykpdevef 184
                  + +vd+pgh df  ++    s  d   lvv++++g    ++qt+   +l+r+l     ++v +nk+d+ v +d+    +    + el+ ++g   +++ f
  MMETSP1061-20121228|7253_1 170 ILNLVDTPGHADFCGEVDRILSLVDGVCLVVDAGEG---PMAQTK--YVLSRALQADlPIVVVLNKVDRrVSFDKVVEGDTEISLEELMEQLGASREQIAF 265
                 35789******************************9...566665..68999998873588999****5499999988888889999******99999998 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.4e-06   0.00081       7      34 ..      72      99 ..      66     109 .. 0.87
   2 !   25.1   0.0   4.7e-09   1.1e-06      71     143 ..     171     244 ..     162     292 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.4e-06
   TIGR00491  7 vavlGhvdhGkttlldkirktrvakrea 34
                va++ hvdhGkttl+d++ +++ a+  a
  MMETSP1061-20121228|7253_1 72 VAIIAHVDHGKTTLVDQLLRSAAASTAA 99
                899**************99998887655 PP

  == domain 2    score: 25.1 bits;  conditional E-value: 4.7e-09
   TIGR00491  71 llvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidripGw.kskegk 143
                 l ++dtPGh  f     r  +l d   lvvd  eG   qt+  ++   q   P vv  nk+dr   + k+ eg 
  MMETSP1061-20121228|7253_1 171 LNLVDTPGHADFCGEVDRILSLVDGVCLVVDAGEGPMAQTKYVLSRALQADLPIVVVLNKVDRRVSFdKVVEGD 244
                 5589**********************************************************855441445554 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.9e-05    0.0094       7      25 ..      71      89 ..      65      97 .. 0.88
   2 !   23.1   0.0   3.3e-08   7.9e-06      69     160 ..     156     247 ..     120     263 .. 0.71
   3 ?   -4.0   0.0       5.6   1.3e+03     295     312 ..     372     389 ..     369     402 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.9e-05
   TIGR03680  7 niglvGhvDhGkttlvkal 25
                n++++ hvDhGkttlv +l
  MMETSP1061-20121228|7253_1 71 NVAIIAHVDHGKTTLVDQL 89
                899*************987 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 3.3e-08
   TIGR03680  69 kceecgsete.llrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidl.vskekalenyeei 160
                  +++ +++++ +   + +vD+PGh  +   +    +l+dg  Lv++a e  P++qtk  l    + +   iv+v nk+d  vs +k++e   ei
  MMETSP1061-20121228|7253_1 156 ASNNTNTNKKnTNTILNLVDTPGHADFCGEVDRILSLVDGVCLVVDAGEG-PMAQTKYVLSR-ALQADLPIVVVLNKVDRrVSFDKVVEGDTEI 247
                 23333333331556679***********9999999************997.8****987753.4445678********9548888888877766 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 5.6
   TIGR03680 295 LDPaltkaDalaGqvvgk 312
                 +DPa tk+D   G+   k
  MMETSP1061-20121228|7253_1 372 FDPATTKSDGTGGSFREK 389
                 79*******998887655 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.4   0.00047      0.11       7      68 ..      76     134 ..      71     139 .. 0.80
   2 !   15.4   0.0   6.4e-06    0.0015      84     170 ..     173     259 ..     159     280 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00047
   TIGR02034   7 GsvddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgiti 68 
                   vd Gk+tl+ +ll  + +      a+ ++d  k g +g e d   l+d  + e+e+giti
  MMETSP1061-20121228|7253_1  76 AHVDHGKTTLVDQLLRSAAAS--TAAANGSSDGSKSGGSG-ESDTDRLLDCGDLEKERGITI 134
                 579************987654..44566667777777766.6799999*************9 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 6.4e-06
   TIGR02034  84 vadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidl.vdydeevfeeikkdylalaeklgvs 170
                 + dtPGh  +  ++    s  d + l+vda +G ++qt+   +  +l     +v+ +nk+d  v +d+ v  + + +  +l e+lg s
  MMETSP1061-20121228|7253_1 173 LVDTPGHADFCGEVDRILSLVDGVCLVVDAGEGPMAQTKYV-LSRALQADLPIVVVLNKVDRrVSFDKVVEGDTEISLEELMEQLGAS 259
                 67************************************854.44566677789999*****548999999888888888998888765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.013       3.2     174     200 ..      60      94 ..      25     133 .. 0.71
   2 !   16.3   0.0   3.5e-06   0.00085     258     299 ..     193     234 ..     162     285 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.013
   TIGR03594 174 e........pikiaiiGrpNvGKStLvNallgeer 200
                 +          ++aii     GK tLv +ll++  
  MMETSP1061-20121228|7253_1  60 TpvlrkrsgVRNVAIIAHVDHGKTTLVDQLLRSAA 94 
                 04444444356889999999999999999887755 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 3.5e-06
   TIGR03594 258 advvllvlDategiseqDlkiaglileegkalvivvNKwDlv 299
                 +d v+lv+Da eg   q + +++ +l++  ++v+v+NK+D  
  MMETSP1061-20121228|7253_1 193 VDGVCLVVDAGEGPMAQTKYVLSRALQADLPIVVVLNKVDRR 234
                 555777888888888888888888888888888888888765 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.54   1.3e+02       8      41 ..      70     103 ..      64     106 .. 0.84
   2 !   12.0   0.0     6e-05     0.015      81     134 ..     187     240 ..     169     294 .. 0.76

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.54
   TIGR03918   8 lhialfGrrNaGKSsliNaltgqdvaivsdvpGt 41 
                  ++a++ +   GK +l+ +l++  +a ++  +G+
  MMETSP1061-20121228|7253_1  70 RNVAIIAHVDHGKTTLVDQLLRSAAASTAAANGS 103
                 578999999************9999988888875 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 6e-05
   TIGR03918  81 revlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeekek 134
                  ++l+ +d + lvvda +++ ++ + +l+++ + ++p++vvlnk+d   + ++ 
  MMETSP1061-20121228|7253_1 187 DRILSLVDGVCLVVDAGEGPMAQTKYVLSRALQADLPIVVVLNKVDRRVSFDKV 240
                 5789999***************************************98776553 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.4   3.5e+02      18      46 ..      69      96 ..      60     103 .. 0.74
   2 !   11.6   0.0   0.00015     0.035     102     142 ..     194     234 ..     189     276 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.4
   TIGR03598 18 lpeiafaGrSNvGKSsliNaLtnrkklar 46
                + ++a++     GK +l+ +L+++   a 
  MMETSP1061-20121228|7253_1 69 VRNVAIIAHVDHGKTTLVDQLLRSA-AAS 96
                5678888899999999999998876.343 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00015
   TIGR03598 102 kgvvllvDirhelkelDlellellkeakipvlvvltKaDkl 142
                  gv+l+vD+  +++++ + +l+ + +a++p++vvl+K+D+ 
  MMETSP1061-20121228|7253_1 194 DGVCLVVDAGEGPMAQTKYVLSRALQADLPIVVVLNKVDRR 234
                 689**********************************9853 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.061        15       3      26 ..      72      95 ..      70     104 .. 0.84
   2 !    8.2   0.0    0.0013      0.31      72     137 ..     185     251 ..     149     288 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.061
   TIGR00436  3 vailGrpnvGKSTLlNkllgqkis 26
                vai+ + + GK TL+ +ll    +
  MMETSP1061-20121228|7253_1 72 VAIIAHVDHGKTTLVDQLLRSAAA 95
                99****************987665 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0013
   TIGR00436  72 eirkalsevdlilfvvdsdeknke.dellleklqklkapvvlalnkldnk.ekdkllelidkeaslle 137
                 e+ + ls vd + +vvd+ e      + +l +  +++ p+v++lnk+d++  +dk++ + d+e sl+e
  MMETSP1061-20121228|7253_1 185 EVDRILSLVDGVCLVVDAGEGPMAqTKYVLSRALQADLPIVVVLNKVDRRvSFDKVV-EGDTEISLEE 251
                 556678899*********99988878999999999**************95555555.4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.56
# Mc/sec: 1242.11
//
Query:       MMETSP1061-20121228|7263_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-05   19.3   0.1    0.00011   19.0   0.0    1.1  1  TIGR02638 lactal_redase: lactaldehyde reductase
     0.0014   15.3   0.4     0.0027   14.4   0.3    1.5  1  TIGR03405 Phn_Fe-ADH: phosphonate metabolism-associated iron-containing alcohol dehydrogenase
  ------ inclusion threshold ------
      0.025   11.9   0.9      0.043   11.1   0.6    1.5  1  TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit


Domain annotation for each model (and alignments):
>> TIGR02638  lactal_redase: lactaldehyde reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0     8e-08   0.00011      68     109 ..      94     135 ..      89     157 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 8e-08
   TIGR02638  68 pnPtvevvkeGlaafkesgadyliaiGGGspidtakaigiiv 109
                 + Pt+e + + l+ ++ +ga  ++++G Gs++d aka+   +
  MMETSP1061-20121228|7263_1  94 AVPTLESLDQTLELMQRTGASSVVSVGSGSAMDLAKAVAASI 135
                 569**********************************97644 PP

>> TIGR03405  Phn_Fe-ADH: phosphonate metabolism-associated iron-containing alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3     2e-06    0.0027      59     106 ..      93     138 ..      72     159 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2e-06
   TIGR03405  59 epnPdvaqlaeladrlaededaidvvvalGGGsvidtakvlavelrrg 106
                 ++ P ++ l+++ + ++ +      vv++G Gs++d ak++a+ + + 
  MMETSP1061-20121228|7263_1  93 SAVPTLESLDQTLELMQRTG--ASSVVSVGSGSAMDLAKAVAASISAT 138
                 56788899999988777766..7899***************9985443 PP

>> TIGR01162  purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   3.2e-05     0.043      23      74 ..      81     134 ..      56     164 .] 0.71

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3.2e-05
   TIGR01162  23 elgi.pyelkvvSahrtpeklleyakeaeergl.kviiagaGgaahLpgmvaal 74 
                 ++g+ ++ ++++Sa  t e l++  + ++++g+ +v+  g+G a +L+ +vaa+
  MMETSP1061-20121228|7263_1  81 QFGLrTVPATISSAVPTLESLDQTLELMQRTGAsSVVSVGSGSAMDLAKAVAAS 134
                 4444556789**********************9445555667788999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1082.31
//
Query:       MMETSP1061-20121228|7262_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1930.95
//
Query:       MMETSP1061-20121228|7259_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1172.37
//
Query:       MMETSP1061-20121228|7264_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-07   28.0   2.3    1.4e-05   22.0   1.6    2.1  1  TIGR00769 AAA: ADP/ATP carrier protein family


Domain annotation for each model (and alignments):
>> TIGR00769  AAA: ADP/ATP carrier protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   1.6   3.5e-09   1.4e-05     299     432 ..     184     300 ..     175     330 .. 0.72

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.5e-09
   TIGR00769 299 neysafmgefstltGvvsvllmlll.gnvlrkygWlvaalvtPlvllltGvaffslilfakkaaslvavlgmtPlllavvvgaiqnvlsksvkyslfdatkemayiPldeeqkvkgkaaidvvaarlGksGGali 432
                   +s+fmg++  ++ v s+++  ll   ++rk g   + l  P++lll   +f++              +g+ P  l v+ +++   l k++ ys+ d++ke  yiP ++  k ++k  idvv++r+ k+ G+  
  MMETSP1061-20121228|7264_1 184 MSFSTFMGHYGQVVNVTSLVFSSLLfPLLIRKLGLRRTLLGFPTMLLLV--TFLA--------------YGAMPGNLTVLFVSL--SLLKAMTYSVHDPSKELLYIPTSNAVKFRAKFWIDVVGERISKAIGSAF 300
                 4577777777777777776654443377777777777777777777663..2322..............345565666655544..5679999************************************988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|7266_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-90  301.4   0.0    1.7e-90  301.2   0.0    1.0  1  TIGR01229 rocF_arginase: arginase
    2.7e-20   70.9   0.0    9.1e-12   43.0   0.0    2.1  2  TIGR01230 agmatinase: agmatinase
    2.6e-18   64.1   0.0    2.4e-08   31.4   0.0    2.1  2  TIGR01227 hutG: formimidoylglutamase


Domain annotation for each model (and alignments):
>> TIGR01229  rocF_arginase: arginase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.2   0.0   1.2e-93   1.7e-90       1     299 [.       8     309 ..       8     310 .] 0.93

  Alignments for each domain:
  == domain 1    score: 301.2 bits;  conditional E-value: 1.2e-93
   TIGR01229   1 sivglpfseGqgkrGvdkGpkalreaglleklkdlekevedlgqvaaaklekesd...reavkaersvlaakeklaekvkkvveekrfplvLggdHsiaiGtvsgvakkakdkklgvlwlDAHaDintletstSgnlHGmPlafllgrlkk..evedleelkllkgk.eispkklvyiGlRdvdegErkilkelgikvfsmkeidklGiakvvektleslkaedpihlSlDvDglDpklapatGtpvrgGltfrEgklilelllesglltaldlvEvNPtldik.eksetikaavelvesllgetl 299
                 si+g+p+  Gq+  G+d Gpk lre gl ++l  l+  ved+++++  +l+++s+     + ++   v++    la+ v+++++e++fpl+LggdHsi +G+++g++++ ++   g++w+DAHaD+nt+ets Sgn HGmPl++l+++     ++ +l+++++l  +  i p++lvy+GlRdvd+ Er  +kelgik ++m+++d lGi++v++ +l++lk + p+hlS+D+D +Dp  apatGt+vrgGlt+rE+++++e l++sg l ++++vEvNPtl+    ++et++ +++l++s +g++ 
  MMETSP1061-20121228|7266_1   8 SIIGAPMTYGQPFIGTDTGPKLLRERGLGTNLTKLGWRVEDMQDLN-FDLNQHSSsgdPPNARNCALVGQGCSVLADVVERKMNEGHFPLILGGDHSIGLGSLAGILRARPN--TGIIWVDAHADLNTPETSGSGNFHGMPLGLLMDHPDGayDFSKLPGFQFLIDGpRIGPEQLVYVGLRDVDPMERIWIKELGIKTYTMTDVDYLGIGQVMKGALDHLKGR-PLHLSYDIDSVDPVHAPATGTKVRGGLTYREAHFVAEFLAQSGDLASAEIVEVNPTLSCDdGANETVELGMQLITSFMGKSI 309
                 69********************************************.66666655333445555556999******************************************..********************************9765411568888898776555****************************************************986.9*********************************************************9989*****************975 PP

>> TIGR01230  agmatinase: agmatinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   9.4e-10   1.3e-06      78     145 ..      77     145 ..       6     160 .. 0.63
   2 !   43.0   0.0   6.6e-15   9.1e-12     156     255 ..     179     284 ..     174     306 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 9.4e-10
   TIGR01230  78 mvekieevveelleegkfvvaiGGeHsitlpvirAvkkkfeklavvqfDAHtDlr.defegeklshacv 145
                     + +vve+ ++eg+f++ +GG+Hsi l+ +  + +  ++  ++ +DAH+Dl   e  g+  +h  +
  MMETSP1061-20121228|7266_1  77 GCSVLADVVERKMNEGHFPLILGGDHSIGLGSLAGILRARPNTGIIWVDAHADLNtPETSGSGNFHGMP 145
                 344567788888899***************************************855777777777666 PP

  == domain 2    score: 43.0 bits;  conditional E-value: 6.6e-15
   TIGR01230 156 vlqigiRsgikeeadlarennikvlk.relede.....iaevlakvldkpvyvtiDiDvlDPafaPGvgtpepgGltskellklfvlaekekkvvGlDvvEvaPvy 255
                  + +g+R     e  +++e +ik  +  +++       ++ +l ++ ++p++++ DiD +DP +aP +gt + gGlt +e+  + ++  ++  +  +++vEv P  
  MMETSP1061-20121228|7266_1 179 LVYVGLRDVDPMERIWIKELGIKTYTmTDVDYLgigqvMKGALDHLKGRPLHLSYDIDSVDPVHAPATGTKVRGGLTYREAHFVAEFLAQSGDLASAEIVEVNPTL 284
                 577899999999999****99998875677654644447777888999*********************************999********************65 PP

>> TIGR01227  hutG: formimidoylglutamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.7e-11   2.4e-08     100     160 ..      81     138 ..      73     153 .. 0.86
   2 !   30.8   0.0   2.6e-11   3.6e-08     232     305 ..     228     304 ..     177     306 .. 0.80

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.7e-11
   TIGR01227 100 vaqavaelladarvvvllGGdneiayatikalaqaakgekriGvinfDAHfDlRavederp 160
                 +a +v+  +++++ +++lGGd++i   +++++ +a + ++  G+i +DAH Dl + e  ++
  MMETSP1061-20121228|7266_1  81 LADVVERKMNEGHFPLILGGDHSIGLGSLAGILRA-RPNT--GIIWVDAHADLNTPETSGS 138
                 577889999999***********************.7777..9**********99994433 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 2.6e-11
   TIGR01227 232 fiyltvdlDVldaasAPGvsApaagGleleellelvkriaasdkvrgveivEvnPtlDad...drTarlaArlvahl 305
                  + l+ d+D +d  +AP       gGl  +e   +++ +a+s+ ++++eivEvnPtl  d   + T++l  +l++++
  MMETSP1061-20121228|7266_1 228 PLHLSYDIDSVDPVHAPATGTKVRGGLTYREAHFVAEFLAQSGDLASAEIVEVNPTLSCDdgaNETVELGMQLITSF 304
                 4789*****************************************************76622257888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.39
# Mc/sec: 1049.14
//
Query:       MMETSP1061-20121228|7272_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 412.47
//
Query:       MMETSP1061-20121228|7275_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 425.96
//
Query:       MMETSP1061-20121228|7269_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 2665.33
//
Query:       MMETSP1061-20121228|7276_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 1267.90
//
Query:       MMETSP1061-20121228|7279_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.2  65.6       0.02   12.0  45.5    1.1  1  TIGR02794 tolA_full: protein TolA
        6.4    2.1  37.8        6.9    2.0  26.2    1.0  1  TIGR02680 TIGR02680: TIGR02680 family protein


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0  45.5   9.5e-06      0.02      71     195 ..      19     137 ..       5     139 .] 0.46

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.5e-06
   TIGR02794  71 pkqerqkkleqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEa....eeakkkaeaeak.Kaka 195
                 p++++ +++e + + ak++q +e++  +  ek++ ++ + a++ ee++k+ +e+++ aeeak k+++E + k+ea a+ e+ ++e+         ka+  +e++k+aE+    eeak kae+e + K++a
  MMETSP1061-20121228|7279_1  19 PEPKALDAEEPERRRAKEEQRKEEEARA--EKEKNERMERARRMEEQRKQ-AEEERLAEEAKLKAEEEERIKQEA-ARVEQEKNER-------MEKARRMEEQRKRAEEerlaEEAKLKAEEEERiKQEA 137
                 3333334433333333333333332222..22444444555556666664.346666667777777777777776.4454444444.......2222222333333333122225677777777555554 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0  26.2    0.0034       6.9     873     984 ..      23     134 ..       4     139 .] 0.70

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0034
   TIGR02680 873 lreaaeeaaeqreraeraeseareaaedaaearaeaeeaslrlraleesvgaevdeirar.laevraaleslkrelrrlaeelataeeararaeekeaeaeaelderaeardh 984
                 +++a+e  ++ +++++r e e  +a+++++e+ ++a +++++ ++ ee   ae++ ++a+ + +++++ +++++e +++ e+ +++ee+r raee++ ++ea+l++++e r +
  MMETSP1061-20121228|7279_1  23 ALDAEEPERRRAKEEQRKE-EEARAEKEKNERMERARRMEEQRKQAEEERLAEEAKLKAEeEERIKQEAARVEQEKNERMEKARRMEEQRKRAEEERLAEEAKLKAEEEERIK 134
                 5566555555444444444.445566667777778888888777777777777777776515679999999999999999999999999999999998888888888877754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       634  (0.154559); expected 82.0 (0.02)
Passed bias filter:                      202  (0.0492443); expected 82.0 (0.02)
Passed Vit filter:                        65  (0.0158459); expected 4.1 (0.001)
Passed Fwd filter:                        31  (0.00755729); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.60
# Mc/sec: 305.77
//
Query:       MMETSP1061-20121228|7274_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   12.1   0.2      0.075   11.2   0.1    1.4  1  TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI


Domain annotation for each model (and alignments):
>> TIGR03142  cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.8e-05     0.075      58     108 ..      23      73 ..      19      75 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.8e-05
   TIGR03142  58 deaeaeaakaElerrLLadakeaeeeaasqakrssrlaalvlvvllpvlal 108
                 + +  e  ++E +r+  +++k++++++++q++r+++l   ++ ++lp+la 
  MMETSP1061-20121228|7274_1  23 APNRTEPNRIESNRNTQQQQKQQKQKQQQQKQRKRMLSRYFVRIVLPLLAA 73 
                 55666778999999999999****99999********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1580.40
//
Query:       MMETSP1061-20121228|7280_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 251.41
//
Query:       MMETSP1061-20121228|7270_1  [L=956]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-08   30.3  98.2    5.1e-08   28.9  25.6    3.2  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    2.2e-07   26.9  41.8    2.2e-07   26.9  29.0    3.6  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
        7.9    3.4  22.6      0.025   11.6   4.8    3.2  3  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6  16.7    0.0001      0.14     766     947 ..     273     450 ..     188     466 .. 0.72
   2 !   28.9  25.6   3.7e-11   5.1e-08     659     896 ..     481     719 ..     475     725 .. 0.71
   3 !   14.8  27.2   6.7e-07   0.00092     249     457 ..     654     864 ..     649     869 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0001
   TIGR02169 766 aeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeee 947
                  + ++++++ ++ +++ +  ++ +s +  ++++    +  e+ ++ e+ l  +++el+++  ++++l ++ ++l     +le+++   +++++ l  ++ ++e++++  ++ + e+e +   L + +  l+++l+e +++ +e + + e+ ++rl+elk++++++ +e ++l  ++ e+  +
  MMETSP1061-20121228|7270_1 273 MQQQHQQQSQQQQQQQQQPYYDPYSGSPAPQSSY---NTAEQQQQYESNLYYLQEELSESLSRENSLVSQLDNLTTTALALEQREVLHKHQLDVLTERVVDVEARAADDRNLLVEYEVNCTALGATILSLQEDLEEWQERCNEWSQRHEDDKERLAELKQAIKEKVSEAEDLAIAM-EDLRI 450
                 3333444444444555555566666666665544...345566778888999999999999999999999999999999999999999999****999**********99999*****************************9999999999999999999998888887776543.44444 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 3.7e-11
   TIGR02169 659 GsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnkle...lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereele 896
                 Gs  + s +++   e+ ++   +  +  L r l+s + +++++e ++ +l+++ s+ ++++e + + +++l+++ + ++e    l++ l++l++e++e++ + ++l  +++e ee+++++k++  ++ +  ++e++ ++++ +++ ++++ + e+ l +i   ++kle   ++ ++ +  ++e +++ +e+e+  +e e++ +++++k++e+ ++ eel++ ++eL  e+++L+ke ++l 
  MMETSP1061-20121228|7270_1 481 GSGGS-SSKTQRYDEEVREDAFEMAKSTLLRALQSERTNVHELEAAVASLQQNNSAISEMVESRDNIIDELNSRIAVFEEDKVVLKAALRQLQKEMKEEEPKTQKLIDDLAEAEEEVERVKADFHSIIET-HQEELANLQAAMSQKQKTITDAESNLTAIGTYVDKLEerlTSFAMTRRDMEEREKKCKEIEKMAEESEAQRKAMEGKVKEFGTQEEELKKLLEELVTERGNLQKENRKLY 719
                 44322.2222233333334445566677778888888888899999999999999999999999999999999999999999999999999999999999999999999999999999999999999765.56789999999999999999999999999887777661113334455555555555555555555555555666666666666666666666666666666666555543 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 6.7e-07
   TIGR02169 249 eleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelre...elkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqk 457
                   ++++e+ e++ +e+ek  ee e+++++++ k+++ g +e  ++k+ leel  e+ +l+++ ++   e+e    +++k+ ++ ++l++e ++l++e+ee+k + e+l   l+++k+++++l++++e +  +++el     e + + e  ekl+ee++    e+ ++ ++  +l +el+e+ ++ + ++e  a+ e+e+ +l+ee k+ e +
  MMETSP1061-20121228|7270_1 654 MTRRDMEEREKKCKEIEKMAEESEAQRKAMEGKVKEFGTQEE-ELKKLLEELVTERGNLQKENRKLYTEQEFRIGEQEKLASRCESLEAETASLRGEVEEWKNRCESLVPDLEASKNTQHDLEQQVETLVGTQKELNTlqiENAVVLETNEKLREEIDGALAEKTQMENKIAELVHELEEMVKAEQLAKEMAAKAEAERLTLEEEAKRRELE 864
                 568899******************************999885.89*********************************************************************************99765555555500044444444555555555555555555444444444554444444444444444444444444444444333 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6  20.3   0.00081       1.1     710     887 ..     278     455 ..     236     467 .. 0.59
   2 !   26.9  29.0   1.6e-10   2.2e-07     252     497 ..     502     740 ..     485     742 .. 0.83
   3 !    7.3  18.0   0.00013      0.17     242     383 ..     716     860 ..     711     869 .. 0.54

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00081
   TIGR02168 710 eeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasl 887
                 ++  ++ ++ +++      + s + ++  +  ++++q+e++l  l++el+e   ++++l ++l+++++++ + e++ +  + +++ l+e++ + +++ ++ ++ l e + + + +  ++ sl++++++++++ +e ++++e+ +e++++l+++i+e  +e e+l  ++e+l    +++
  MMETSP1061-20121228|7270_1 278 QQQSQQQQQQQQQPYYDPYSGSPAPQSSYNTAEQQQQYESNLYYLQEELSESLSRENSLVSQLDNLTTTALALEQREVLHKHQLDVLTERVVDVEARAADDRNLLVEYEVNCTALGATILSLQEDLEEWQERCNEWSQRHEDDKERLAELKQAIKEKVSEAEDLAIAMEDLRITEQRR 455
                 2222222222222222222333333333444444555666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666554443322 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 1.6e-10
   TIGR02168 252 eeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesle 497
                 e   ++l ++l+   +++ el++++++l+++  ++ + +++  + i++l+++i++ +e +  l++ l +l+++++e+e k ++l ++lae eee+e++k+++ s+ + ++e   el++l+++++++++ +++++s++ ++   +++l+++l++   +  ++eer+++ k+ ie+    +ee ea++k+++++++e  +++eel++ le+l+++  +l++e +++ ++ +    e ++l++r+esle
  MMETSP1061-20121228|7270_1 502 EMAKSTLLRALQSERTNVHELEAAVASLQQNNSAISEMVESRDNIIDELNSRIAVFEEDKVVLKAALRQLQKEMKEEEPKTQKLIDDLAEAEEEVERVKADFHSIIETHQE---ELANLQAAMSQKQKTITDAESNLTAIGTYVDKLEERLTSFAMTRRDMEEREKKCKE-IEK---MAEESEAQRKAMEGKVKEFGTQEEELKKLLEELVTERGNLQKENRKLYTEQEFRIGEQEKLASRCESLE 740
                 333344556777777888888888888888888888888888888888888888888888888888889999999999999999999999999999999999999999998...99999999999**************************9999999999999654444.433...35677899999********************************99999999999999999*****9998 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.00013
   TIGR02168 242 eeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleql...ekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeelee 383
                 ++l +e++    e+e+l+++ + le+e + lr e++e +++ e+l  +l++ k+++++leq++e l   +++l   + e++ + e+ e+l+++ + + +e++++e++++el  ele++ ++ + a++ ++++e++  +leee+++
  MMETSP1061-20121228|7270_1 716 RKLYTEQEFRIGEQEKLASRCESLEAETASLRGEVEEWKNRCESLVPDLEASKNTQHDLEQQVETLVGTQKELntlQIENAVVLETNEKLREEIDGALAEKTQMENKIAELVHELEEMVKAEQLAKEMAAKAEAERLTLEEEAKR 860
                 4555555555667788888888888888888888888888888888888888888888888888765554444000444444444444444444445555555555555554444444433333333333333322222222222 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   1.3      0.14   1.8e+02     165     249 ..     357     441 ..     321     449 .. 0.76
   2 ?   11.6   4.8   1.9e-05     0.025     140     279 ..     506     650 ..     495     655 .. 0.86
   3 ?    1.7   0.3     0.018        25     173     254 ..     750     831 ..     681     845 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.14
   TIGR00996 165 qgpqlrelleglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdl 249
                 + +ql  l e++  + a++++ ++ + e   n  ++ +++   +++l+++ +  ++ +++ +d +++L+++ +a+++ +++++dl
  MMETSP1061-20121228|7270_1 357 HKHQLDVLTERVVDVEARAADDRNLLVEYEVNCTALGATILSLQEDLEEWQERCNEWSQRHEDDKERLAELKQAIKEKVSEAEDL 441
                 4567778888888888888888888888888889999999999999999999999999999999999999999998888888776 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1.9e-05
   TIGR00996 140 trllekldpeklnai.lnalaealaGqgpqlrelleglaqltaalnerdedigeli....dnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenrpnLaqalanLasvltllvdyspele 279
                 ++ll++l+ e+ n   l+a+   l+++   ++e++e+ + ++++ln+r   ++e+     + l ++ + + +++++ ++l d+la++ + ++  ++++ +++++ ++ +a++++++++ ++++++a +nL ++ t +++  ++l+
  MMETSP1061-20121228|7270_1 506 STLLRALQSERTNVHeLEAAVASLQQNNSAISEMVESRDNIIDELNSRIAVFEEDKvvlkAALRQLQKEMKEEEPKTQKLIDDLAEAEEEVERVKADFHSIIETHQEELANLQAAMSQKQKTITDAESNLTAIGTYVDKLEERLT 650
                 46889999999875438999999*************************9999886511114555666667788999*********************************************************999998877776 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.018
   TIGR00996 173 leglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrdllaenr 254
                 +e+ +   + l + +e+ + +   l + +++l+ ++++l++l  + a ++++ ++ ++++d ala+ +++ +++++l+ e +
  MMETSP1061-20121228|7270_1 750 VEEWKNRCESLVPDLEASKNTQHDLEQQVETLVGTQKELNTLQIENAVVLETNEKLREEIDGALAEKTQMENKIAELVHELE 831
                 4444444444444455555555556666666666666666666666666666666666666666666666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       601  (0.146514); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.98u 0.16s 00:00:01.13 Elapsed: 00:00:01.26
# Mc/sec: 1001.44
//
Query:       MMETSP1061-20121228|7281_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.1   0.0      0.027   11.1   0.0    1.1  1  TIGR02472 sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain


Domain annotation for each model (and alignments):
>> TIGR02472  sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.5e-06     0.027     244     272 ..      26      54 ..       2      64 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.5e-06
   TIGR02472 244 kepekPlilalsrpverkniealveayGr 272
                 +++++ +i++l r +++kni  l++ay  
  MMETSP1061-20121228|7281_1  26 EKTNQSPIVSLNRFERKKNIGLLIRAYAY 54 
                 4667889*******************974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|7282_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1060.46
//
Query:       MMETSP1061-20121228|7285_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1251.62
//
Query:       MMETSP1061-20121228|7288_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.55
# Mc/sec: 249.58
//
Query:       MMETSP1061-20121228|7290_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.2    2.6  31.6        4.5    2.6  21.9    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
          6    4.7  11.4        7.8    4.3   7.9    1.1  1  TIGR02205 septum_zipA: cell division protein ZipA


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  21.9    0.0022       4.5     906    1002 ..       8     112 ..       1     117 [] 0.53

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0022
   TIGR00927  906 Gdegeeqkveaeeeeeed..ekdegeede.eeiadd.eevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeee....eeeeeeeeeeeeeeeee 1002
                   +++e++k e+++++++d  +kd+g++d+ ++++d+ + vk    e++l+ enq     + kGvd ++g++GGds+ + +        +e++++ ++e++++++e
  MMETSP1061-20121228|7290_1    8 DKDEENNKDEDDNNNNKDnnNKDDGKNDDfQDRKDEvKVVKVPSAEKDLTLENQHRLPLGTKGVDRDEGGEGGDSNSNSNSASTsastNENNKDYNNEDNDDDDE 112 
                  222333344444333333003333333321222222134677899******************************998876654321122222222222222222 PP

>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.9    0.0038       7.8      27     114 ..      11      97 ..       6     115 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0038
   TIGR02205  27 keksklfdkkklkraklksdddsseelvedde.veevrverveheipqpseqkepsiseavdkerkksvedeeasvpaqpvqqqldlpq 114
                 +e +k  d+++ ++ + ++dd +++++ + ++ v+ v+v   e++ +  +++++p+ ++ vd+++  +  d++ + +   ++  +  ++
  MMETSP1061-20121228|7290_1  11 EENNKDEDDNNNNKDNNNKDDGKNDDFQDRKDeVKVVKVPSAEKDLTLENQHRLPLGTKGVDRDEGGEGGDSNSNSNSASTS--ASTNE 97 
                 566677788899999999999998888877666999999999********************99988887777776632222..22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 617.71
//
Query:       MMETSP1061-20121228|7287_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 728.38
//
Query:       MMETSP1061-20121228|7295_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|7294_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 1103.91
//
Query:       MMETSP1061-20121228|7293_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-129  429.2   0.0   3.3e-129  428.7   0.0    1.1  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    3.2e-10   37.9   0.0    4.8e-10   37.4   0.0    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    5.5e-08   30.2   0.0    8.1e-08   29.6   0.0    1.2  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.9e-06   25.4   0.0    2.9e-06   24.8   0.0    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      9e-06   23.3   0.0    1.8e-05   22.4   0.0    1.4  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.1e-05   20.0   0.0     0.0001   18.7   0.0    1.6  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    0.00015   19.1   0.0    0.00021   18.5   0.0    1.2  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
  ------ inclusion threshold ------
      0.012   12.8   0.1       0.02   12.1   0.1    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.7   0.0  6.4e-132  3.3e-129       4     314 ..      81     411 ..      79     412 .. 0.96

  Alignments for each domain:
  == domain 1    score: 428.7 bits;  conditional E-value: 6.4e-132
   TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfr..esgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvtanskelagk.vpikadlgdlsgleaglkaaniamidgkefkaakaykdsklcnmltvrelhrryhdetgivfaslypgcvadtglfrehlplfrtlfppfqkyitkgyvseeeagkrlaqvvadpklkksgvywswgkrq....................esfeqelseevsddekakklwelseklvgl 314
                 + v+itgassglgla++ al+++ k+h++macrd+ ka+++a+++glpk+syt +kl+lasl+svr fv++++  +s r+l  l+cnaavy p+  ep ++ dg+e+s++ nhlghfll nlll+d+ ++  k  r+ i+gs+t+n+++++g  v ++adlg+l+g+e g  ++ i+m+dgk+f +akaykdsk+cnm+tv el rryh++tgivf+s+ypgc+a+t+lfre+   fr++fp f ky+t+gyv e eag+rlaqv+ dp+ +ksgvywsw+  +                    e fe+e s+ v d+e a+k+wels+ lv l
  MMETSP1061-20121228|7293_1  81 KLVVITGASSGLGLATTIALAKTNKYHIIMACRDIVKAKRVAEEVGLPKNSYTCMKLELASLQSVRDFVANLKafKSARPLTHLICNAAVYRPTDPEPAWTDDGFEMSMGVNHLGHFLLVNLLLDDMSRA--KGARVCIVGSITGNTNTVGGGlVYPRADLGKLEGFEQGAVKP-ISMVDGKPFFGAKAYKDSKVCNMMTVSELNRRYHEDTGIVFSSMYPGCIAETALFREKREWFRKIFPAFMKYVTGGYVGETEAGERLAQVIDDPQCNKSGVYWSWNGGAktvgrwaedgkprgaggsggEIFENEQSDAVQDAETAQKMWELSKELVRL 411
                 569********************************************************************9944589************************************************9776..678***************9762567*****************.9********************************************************************************************************97766799**************9999**************************88 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   9.4e-13   4.8e-10       1     144 [.      83     229 ..      83     251 .. 0.90

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 9.4e-13
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveeve..eelgeidilvnnAGitrDk.lllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnag 144
                 +++tGas g+G a++ +lak+    +i+  ++  ka+++aee+    ++++++kl++++ ++v+++v++++  +++  +  l++nA + r +      +++ ++  + vn  g f +++  l  m +++  r+  ++s+ g +  +g
  MMETSP1061-20121228|7293_1  83 VVITGASSGLGLATTIALAKTNKYHIIMACRDIVKAKRVAEEVGLPKNSYTCMKLELASLQSVRDFVANLKafKSARPLTHLICNAAVYRPTdPEPAWTDDGFEMSMGVNHLGHFLLVNLLLDDMSRAKGARVCIVGSITGNTNTVG 229
                 68******************998888888899999*********99999******************97652267889**********997614568899****************************************9887665 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.6e-10   8.1e-08       2     141 ..      81     224 ..      80     229 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.6e-10
   TIGR01963   2 kvalvtGaasGiglaiakelaaaG.akvvvndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieava..aefgsldiLvnnAGiqh.vapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhgl 141
                 k +++tGa+sG+gla + +la+    ++++   +  +a+++a+e+     + + +k+++++ ++++d +++++  ++++ l  L+ nA +    +p   +  + fe  + vn  + f +++  l  m +++  r+  ++s+ g 
  MMETSP1061-20121228|7293_1  81 KLVVITGASSGLGLATTIALAKTNkYHIIMACRDIVKAKRVAEEVGLPKNSYTCMKLELASLQSVRDFVANLKafKSARPLTHLICNAAVYRpTDPEPAWTDDGFEMSMGVNHLGHFLLVNLLLDDMSRAKGARVCIVGSITGN 224
                 789******************97625788888888999999****************************98762256778889999999976256666899999***************************99********986 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   5.8e-09   2.9e-06       6     135 ..      81     215 ..      78     234 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 5.8e-09
   TIGR01832   6 kvalvtGantGlGqgiavglaeaGadivgvg...iselsetqekvealGrkflslkadladeeaakalvde..aveeagkidilvnnaGiirredav.efsekdwddvlnvnlkavfllsqavakkllkqGrkgki 135
                 k +++tGa++GlG + +++la++    + ++   i++++  +e+v    + ++ +k++la+ ++++ +v++  a ++a  +  l+ na + r  d + ++++  ++  + vn    fll + +  ++ +  + +++
  MMETSP1061-20121228|7293_1  81 KLVVITGASSGLGLATTIALAKTNKYHIIMAcrdIVKAKRVAEEVGLPKNSYTCMKLELASLQSVRDFVANlkAFKSARPLTHLICNAAVYRPTDPEpAWTDDGFEMSMGVNHLGHFLLVNLLLDDMSR-AKGARV 215
                 7799******************98754444402256666666677767789999**************996225667789************999764799999*********9999999877666543.234444 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   3.4e-08   1.8e-05       2     146 ..      82     229 ..      81     249 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 3.4e-08
   TIGR01829   2 valvtGglgGiGtaickrlak.dGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakvea..elGpvdvlvnnaGitrdavfk.kmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfG 146
                 + ++tG++ G+G a + +lak + y+++ +++ +  +ak++++e ++ +   + +k +++s ++ ++ va+++a     p+  l+ na + r +  +   t + +e  + +n  + f + + ++++m   +  r+  + s+ G    +G
  MMETSP1061-20121228|7293_1  82 LVVITGASSGLGLATTIALAKtNKYHIIMACR-DIVKAKRVAEEVGLPKNSYTCMKLELASLQSVRDFVANLKAfkSARPLTHLICNAAVYRPTDPEpAWTDDGFEMSMGVNHLGHFLLVNLLLDDMSRAKGARVCIVGSITGNTNTVG 229
                 6789***************9725799999998.89999********************************9987335678999*********9876625688889999***********************9***********987776 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0     2e-07    0.0001     414     553 ..      80     220 ..      75     312 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 2e-07
   TIGR02632 414 rrvalvtGgasGiGrevarrlvde.GahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaeva..layGGvdivvnnaGiavskple.eteleeWdlnldilatGyflvareaarllrkqglggnlvfias 553
                 r+++++tG++sG+G ++++ l++    h+++a  d  +a+ va+e+     ++   ++kl++++ ++v+  +a+     +   +  ++ na +   ++ e + +++ +++++ ++  G+fl+ +     + + + g+ + +++s
  MMETSP1061-20121228|7293_1  80 RKLVVITGASSGLGLATTIALAKTnKYHIIMACRDIVKAKRVAEEVG--LPKNSYTCMKLELASLQSVRDFVANLKafKSARPLTHLICNAAVYRPTDPEpAWTDDGFEMSMGVNHLGHFLLVNLLLDDMSR-AKGARVCIVGS 220
                 78999****************9861579******************9..88999999***********998776431134455777888888877665551566999*************998877776654.44666666665 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.2e-07   0.00021       1     142 [.      83     226 ..      83     249 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.2e-07
   TIGR01831   1 vlvtgasrgigraialklaad.gfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehga..yygvvlnagiarda.afpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmg 142
                 v++tgas g+g a ++ la    ++i + + +d  +a+ +++++     +   +k+++a  ++vr+ + +  a + a     ++ na + r +   pa +++ +++ +  n  g + +++ l+  m ra kg r+  + s++g   
  MMETSP1061-20121228|7293_1  83 VVITGASSGLGLATTIALAKTnKYHIIMAC-RDIVKAKRVAEEVGLPKNSYTCMKLELASLQSVRDFVANLKAFKSArpLTHLICNAAVYRPTdPEPAWTDDGFEMSMGVNHLGHFLLVNLLLDDMSRA-KGARVCIVGSITGNTN 226
                 789***************975157777666.68999*********999999**************99876555555422678999*****975268********************9999988888776.7*******99998654 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   3.8e-05      0.02       2      85 ..      82     160 ..      81     169 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.8e-05
   TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkee 85 
                 l+++tGas G+G +    lak   ++   +++  R+    k+  +e++   ++ s   + l+l + + v d++  l++    + 
  MMETSP1061-20121228|7293_1  82 LVVITGASSGLGLATTIALAK---TNKYHIIMACRDIVKAKRVAEEVGL--PKNSYTCMKLELASLQSVRDFVANLKAFKSARP 160
                 689*********877777777...5556778899999999999999997..677778888999999999999888887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.21u 0.20s 00:00:00.41 Elapsed: 00:00:00.37
# Mc/sec: 1512.52
//
Query:       MMETSP1061-20121228|7299_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 930.52
//
Query:       MMETSP1061-20121228|7298_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 847.51
//
Query:       MMETSP1061-20121228|7296_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       297  (0.0724037); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.46
# Mc/sec: 2166.34
//
Query:       MMETSP1061-20121228|7301_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0048   14.4   0.6     0.0066   13.9   0.4    1.2  1  TIGR03823 FliZ: flagellar regulatory protein FliZ


Domain annotation for each model (and alignments):
>> TIGR03823  FliZ: flagellar regulatory protein FliZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.4   1.6e-06    0.0066      71      87 ..      54      70 ..      47      82 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.6e-06
   TIGR03823 71 lcrfcseiycnseadyf 87
                 cr c++i+cn+ ++yf
  MMETSP1061-20121228|7301_1 54 HCRICGQIFCNTCSGYF 70
                5***************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 646.05
//
Query:       MMETSP1061-20121228|7300_1  [L=981]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-16   57.9   0.2    3.7e-13   46.1   0.0    3.1  3  TIGR01448 recD_rel: helicase, RecD/TraA family
      1e-11   42.0   0.2    2.4e-10   37.5   0.1    2.7  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
    5.4e-11   39.3   0.1    3.8e-06   23.3   0.0    2.6  2  TIGR02768 TraA_Ti: Ti-type conjugative transfer relaxase TraA
    0.00061   16.6   0.0      0.001   15.8   0.0    1.3  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00092   15.4   1.5       0.34    6.9   0.1    2.9  3  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
  ------ inclusion threshold ------
      0.013   12.5   0.2      0.024   11.7   0.1    1.3  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau


Domain annotation for each model (and alignments):
>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   5.4e-16   3.7e-13     305     461 ..     196     364 ..     167     369 .. 0.83
   2 ?    1.1   0.0     0.022        15     582     620 ..     522     560 ..     510     568 .. 0.85
   3 !    6.3   0.0   0.00059       0.4     644     688 ..     609     649 ..     600     654 .. 0.77

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 5.4e-16
   TIGR01448 305 eeindekhilevekklelelseeqkealktaiqdkvviltGGPGtGKtTvtkaiielaeelegllevvLaAPTGrAakrlaEvTGkeaaTiH.rllgygsdekses.nledki.dadllivDEvsmvdtwllssllaavpd.........darlllvGDadqLPsVgaG 461
                 ++ +++ h +e  + +  +lseeq  al+ + q + v +tG  GtGK+ v k  +e ++e   ++e v  APTG  a  l+  T ++ a i    + +++ + +++ nl++k  + ++li+DEvsm+   ++ sl + v+d         + +l++ GD  qL ++++ 
  MMETSP1061-20121228|7300_1 196 DTKENDAHGTETISGAATSLSEEQSRALDLIKQGRNVFVTGVAGTGKSLVLKKTLEYVQEHYDPKEYVAVAPTGSTAIALEGQTMHSFAGIGiPKIYKDFRKMKTNkNLRKKWeNLKVLILDEVSMISGEFFDSLSKVVSDirddprpfgGIQLIVCGDFLQLSPIAPQ 364
                 4555666999999****************************************************************9999999888777752456667766666646666652689**************99998887754433434434689999999999999885 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.022
   TIGR01448 582 lkevefrkgdrvlqtkNdynkevFNGdlGviveiekake 620
                  ++ + + g +v+ +kN  +  + NG  G++v+  + k+
  MMETSP1061-20121228|7300_1 522 ENDLQLKIGAQVMLIKNLNQYSLVNGSRGTVVGFRTVKN 560
                 56778899************************9888765 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.00059
   TIGR01448 644 nltlaYalsiHksqGsefsvVilpiveahlrmLeRnllYTalTRa 688
                  l+la+a++ Hk+qG  + +Vi  +   +        lY al Ra
  MMETSP1061-20121228|7300_1 609 PLKLAWAITAHKAQGLTMDYVIADVGAVF----AEAQLYVALSRA 649
                 5899******************9875433....334456666665 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1   3.5e-13   2.4e-10     146     568 ..     215     651 ..     180     659 .. 0.71

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 3.5e-13
   TIGR01447 146 lleeenlqkvavalalksnfslitGGPGTGKTttvarlllalikqskaqgklrialaaPTGkAaarLteslkkavkklaleeeliaalpseasTihrLLgakpdkkefrhheenplplDvlvvDEaSMvdlelm...akLlealkketk......LIllGDknQLasv..eaGavlgdllelaeeg........sllaellgvatlkkeasktaepladnlvmLkkshRfkkksgigqLakainsgda.eavldalrsgeeieiefaeskedaikllknllvkyrtllkklaaleeakeileafselrlLtalreGpfGvegl..NkrieeeLkkekllkkqeeewylgrpilvtendeklglyNGdiGvllrdkdk.........................lkvlferkdgsikavlpsrlpn....yetafamtvHKSQGSefdevlliLpkeespvLtrellYTgiTRakk 568
                 l+ee   q  a+ l+ +++ +++tG  GTGK  +  + l  ++++   +   +   +aPTG  a  L+   +++++         + +p     i +   + + +k++r+   +  +l vl+ DE SM++ e +    k+++ +++  +      LI+ GD  QL+++  ++ +v ++  +l+e+         +     l      +  s   +++  +lv Lk+ +R+++   ++ L + i+ g + ++ +  l++  e+ +   e+  ++  l +  +  +r+ l  l++l+      +a++e+        Gp+  ++l  N   +  L++ + l+ +     +g  +++++n ++  l+NG +G ++  ++                          l++++  ++ + + + + + +      + a+a+t HK+QG   d v+   +     v+  + lY ++ Ra +
  MMETSP1061-20121228|7300_1 215 LSEE---QSRALDLIKQGRNVFVTGVAGTGKSLVLKKTLEYVQEHYDPK---EYVAVAPTGSTAIALEGQTMHSFAG--------IGIP----KIYKDFRKMKTNKNLRK---KWENLKVLILDEVSMISGEFFdslSKVVSDIRDDPRpfggiqLIVCGDFLQLSPIapQQWEVDQNTRALQEKEgletpeeaR---DWLFLNRGFAFQSLAWKDADFELVELKQVFRQSNLDFVNVL-QDIRVGRVtHETIRYLKENCERPLPDNELGIQPTILHSRNVDVTRENLVDLNKLSGETVSYQALDEVE--RENGVGPWVKKELekNSFFKSCLAE-NDLQLK-----IGAQVMLIKNLNQYSLVNGSRGTVVGFRTVknsstsgvnllpgmtkypvvrfkngLQQVITPQKFQSRILGKGTCTRtaipLKLAWAITAHKAQGLTMDYVI--ADV--GAVFAEAQLYVALSRASD 651
                 2222...33699********************************99996...666689*********9999999844........5555....44444444555666766...555679***********7776111555666666666999999*************444667888888888777676643321...333334444445555566666899*********96566655.77886655156777888888888888888888887777777777777888887777666666666655..3567899999888556778888886.444444.....9*********************987655545567899999999996666666555555544444443333333333222226889*********99888765..333..488888889999888865 PP

>> TIGR02768  TraA_Ti: Ti-type conjugative transfer relaxase TraA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   5.6e-09   3.8e-06     356     489 ..     211     361 ..     158     380 .. 0.73
   2 !   12.6   0.1   9.2e-06    0.0063     584     712 ..     491     654 ..     465     672 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 5.6e-09
   TIGR02768 356 qsarLseEqkeAvrhvtksediavvvGraGaGkstllkaareaweaa..GyrviGaALaGkaAegLeaes.....Giesrtlaslelaw...kngrdlledkdvlviDEAGmva...srqlarvlkeAeea.....gakvvLvGDpeqLqai 489
                  ++ LseEq +A+  + + +++  v G aG+Gks +lk   e+ +++    + +  A +G +A +Le ++     Gi    +    +++   kn r++ e+ +vl++DE  m++   + +l++v++  +       g ++++ GD  qL +i
  MMETSP1061-20121228|7300_1 211 AATSLSEEQSRALDLIKQGRNV-FVTGVAGTGKSLVLKKTLEYVQEHydPKEYVAVAPTGSTAIALEGQTmhsfaGIGIPKIYKDFRKMktnKNLRKKWENLKVLILDEVSMISgefFDSLSKVVSDIRDDprpfgGIQLIVCGDFLQLSPI 361
                 4678*********999888776.689***********998877665411345667778888888887653222337766555433333301145567888999**********844456888888877763333448899999999999998 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 9.2e-06
   TIGR02768 584 raLneavRealk...ernelgesllfrt..eegerkfaaGdrivflendreLgvknGmlgtveeiekk................rlsvrldsgekviveekeYda..............lDhgYAatiHksqGvtvdrakvLaskslDRhlayvamtRHresvq 712
                 +aL+e+ Re+ +    ++el+++  f++  +e +++++ G ++++++n ++  + nG  gtv    +                   +vr  +g + ++  +++++              l  ++A+t Hk+qG t+d +      ++     yva++R  ++  
  MMETSP1061-20121228|7300_1 491 QALDEVERENGVgpwVKKELEKNSFFKSclAENDLQLKIGAQVMLIKNLNQYSLVNGSRGTVVGFRTVknsstsgvnllpgmtkYPVVRFKNGLQQVITPQKFQSrilgkgtctrtaipLKLAWAITAHKAQGLTMDYVIADVGAVFAEAQLYVALSRASDATG 654
                 566666666654222467788888888633577889999999999999999999999999997655444568889988888887344555554333333333332111111111222336889**************999888899999999******988765 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.5e-06     0.001      39      78 ..     228     263 ..     213     335 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.5e-06
   TIGR02928  39 rpsnvliyGktGtGKtavtkkvlkeleeaaeekdvrvstv 78 
                 + +nv++ G +GtGK++v kk+l+ ++e+ + k    ++v
  MMETSP1061-20121228|7300_1 228 QGRNVFVTGVAGTGKSLVLKKTLEYVQEHYDPK----EYV 263
                 568*************************99975....333 PP

>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0014      0.98     548     583 ..     801     836 ..     795     839 .. 0.87
   2 ?   -0.0   0.0     0.063        43     551     582 ..     851     882 ..     843     886 .. 0.89
   3 !    6.9   0.1    0.0005      0.34     545     582 ..     930     967 ..     872     971 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0014
   TIGR00578 548 kGtlgkltvsvlkdickaeGlrsgskkqelldalkk 583
                 +  l + tv  lk + +++Gl+ +++k el++ l  
  MMETSP1061-20121228|7300_1 801 EDDLKQQTVVELKGMLRDRGLKVSGRKTELIERLFT 836
                 5678899************************98865 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.063
   TIGR00578 551 lgkltvsvlkdickaeGlrsgskkqelldalk 582
                 l + tv  lk + ++ G r +++k+el++ l+
  MMETSP1061-20121228|7300_1 851 LKRRTVVELKFMLRKLGRRVSGRKAELIERLT 882
                 67789***********************9887 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0005
   TIGR00578 545 evkkGtlgkltvsvlkdickaeGlrsgskkqelldalk 582
                    +  l + tv  lk + +++Gl+ +++k+el++ l 
  MMETSP1061-20121228|7300_1 930 VHGHDSLQRRTVVELKGMLRERGLKVSGRKAELIERLA 967
                 3445679999************************9876 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   3.5e-05     0.024     101     141 ..     294     334 ..     290     338 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.5e-05
   TIGR02397 101 direllenvkyapskskykvYiiDEvhmLsksafnaLLKtl 141
                 d r+++ n +++   ++ kv i+DEv m+s + f++L K++
  MMETSP1061-20121228|7300_1 294 DFRKMKTNKNLRKKWENLKVLILDEVSMISGEFFDSLSKVV 334
                 6799999999999999***********************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (981 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.63u 0.15s 00:00:00.78 Elapsed: 00:00:00.46
# Mc/sec: 2814.81
//
Query:       MMETSP1061-20121228|7306_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.41    8.6   5.8         11    4.0   4.0    2.5  1  TIGR00880 2_A_01_02: multidrug resistance protein
        2.9    5.3   6.2        6.7    4.1   4.2    1.7  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   4.0    0.0051        11      94     113 ..      23      42 ..       2      60 .] 0.72

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0051
   TIGR00880  94 agialgpilGpllGavlaqa 113
                 +g+ lgp lGp+lG +l++ 
  MMETSP1061-20121228|7306_1  23 LGTPLGPALGPALGKLLGPL 42 
                 45556666666666666544 PP

>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   4.2    0.0033       6.7      45      75 ..      11      41 ..       5      60 .] 0.79

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0033
   TIGR03789 45 iGlgsGallGavVgGPvGaiiggitGgligq 75
                +G   G  lG++ g P+G  +g   G l+g 
  MMETSP1061-20121228|7306_1 11 LGTPLGTTLGTLLGTPLGPALGPALGKLLGP 41
                5666788999999999998888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|7307_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|7310_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 437.96
//
Query:       MMETSP1061-20121228|7309_1  [L=847]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 3288.08
//
Query:       MMETSP1061-20121228|7313_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 479.33
//
Query:       MMETSP1061-20121228|7316_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 312.61
//
Query:       MMETSP1061-20121228|7315_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 1153.68
//
Query:       MMETSP1061-20121228|7312_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 569.95
//
Query:       MMETSP1061-20121228|7322_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 422.37
//
Query:       MMETSP1061-20121228|7311_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   14.3   0.1     0.0063   14.3   0.0    2.1  2  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.5e-06    0.0063     147     182 ..     182     218 ..     108     230 .. 0.62
   2 ?   -4.3   3.4      0.68   2.8e+03      60     100 ..     304     357 ..     279     370 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.5e-06
   TIGR03296 147 ttigskklvgdy.tiqpedagvgVlaHElGHdlglPD 182
                 ++++  k++  y  +   d  + +++HE+GH +glP+
  MMETSP1061-20121228|7311_1 182 IQSSVAKMNEHYlRNADYDERLYTMCHEIGHGFGLPH 218
                 33333334443314445677799*************8 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 0.68
   TIGR03296  60 ayYgknn..gdtsdekardlvkeala...........ielaqyddfdrydldgd 100
                 +yY++ +   ++  ++ ++++ke +             + a  dd d+y  d+d
  MMETSP1061-20121228|7311_1 304 YYYESAReeYPNLSAEYETAMKEFYYeleqgslgrssHANANDDDYDDYEDDDD 357
                 333333344444555555555555555666666666655555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 1527.30
//
Query:       MMETSP1061-20121228|7323_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.1    4.8   5.8        3.8    3.9   4.0    1.3  1  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   4.0   0.00092       3.8     139     240 ..     264     363 ..     248     381 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.00092
   TIGR00437 139 kgrgieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvkkesesklsateiadeekvlve 240
                 k++ +++l + +d     kl+++ ++a ++  + e+ ++ k+k k+ k+k + +l  +++++++ ++e ++ +k l  v+ k  ++ ++++e+ad+   +v 
  MMETSP1061-20121228|7323_1 264 KKKKRSKLLARLD--DSAKLKKNASDASNDASNDEKKEKKKKKKKSSKKKEEDQLSSTKKKKKSSSKEKSSDDKDLVPVTDKATKESKESEEVADDIISTVT 363
                 5666666666666..677777888888888888777777777777777777777777777788888888888888888888888888888888887654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       426  (0.103852); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 2426.27
//
Query:       MMETSP1061-20121228|7320_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.1   0.0      0.022   11.5   0.0    1.2  1  TIGR02630 xylose_isom_A: xylose isomerase


Domain annotation for each model (and alignments):
>> TIGR02630  xylose_isom_A: xylose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   5.4e-06     0.022      25      76 ..     139     190 ..     132     214 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.4e-06
   TIGR02630  25 npeeviegkkmkdhlrfavayWhtlaaegaDpfGagtaerpwdkeltdaldk 76 
                 +pe++ + k m   l +   yWh l+++g+     +t ++pw  +++ ++++
  MMETSP1061-20121228|7320_1 139 DPERLAKAKAMVYALNYVSLYWHGLTKDGRPVLWLRTNRKPWYPDVDAEVNA 190
                 79999*************************************9877776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1897.34
//
Query:       MMETSP1061-20121228|7321_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1969.28
//
Query:       MMETSP1061-20121228|7327_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1119.27
//
Query:       MMETSP1061-20121228|7328_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 1018.96
//
Query:       MMETSP1061-20121228|7325_1  [L=724]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-19   65.4   0.1    4.7e-14   50.0   0.0    2.6  2  TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
    1.4e-05   22.2   0.1    2.2e-05   21.5   0.1    1.3  1  TIGR03088 stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
     0.0023   15.1   0.1      0.031   11.4   0.0    2.1  2  TIGR00661 MJ1255: conserved hypothetical protein
     0.0034   14.2   0.0     0.0066   13.2   0.0    1.4  1  TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
     0.0065   13.9   0.1       0.04   11.3   0.0    2.2  3  TIGR03590 PseG: pseudaminic acid biosynthesis-associated protein PseG


Domain annotation for each model (and alignments):
>> TIGR01133  murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.3e-05      0.01     134     230 ..     246     366 ..     169     387 .. 0.70
   2 !   50.0   0.0   5.7e-17   4.7e-14     216     353 .]     517     653 ..     504     653 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
   TIGR01133 134 llsrfAkkvlvsfekvkkl.......aekivlvgnpvreeirelp..................aakadlkarenkltilvlGGSqGAkilNelvpkalaklaek...lilviiqagkqdlekvkr 230
                 ++s   +k +v  +++ +l       +ek vlvg p+r +++  +                  ++k +l a  ++ t+lv+GG  G   l+++v +++ +l ++   +  +++++ +   ek+k+
  MMETSP1061-20121228|7325_1 246 WFSAGVEKLFVGSPQIHELalkkgipEEKLVLVGLPIRHDFAVESeklgdrmseagqqyqrkvREKLQLPA-VDRKTLLVMGGGEGVGSLSNIVDALYVELVKQsvnAVIMVVCGRN---EKLKK 366
                 56666666666666666655555665567888888888887755578888888888887764222224443.37899***************************7642233334444...44444 PP

  == domain 2    score: 50.0 bits;  conditional E-value: 5.7e-17
   TIGR01133 216 viiqagkqdlekvkrayselg..iaekiee..fidndmaaaykaadLvIsRAGAstvaElaavglPailiPypsaaddqyyNakeledagaglvleqkellteklveklkkllkdearleemaeaaqklakkkaakrlaell 353
                  +i+++++d+e       e++   + ++ +  f++ +ma+++ aad+ Is AG +t++E aa+ lP  l  +    +++  N  +++d g g   ++++  te ++e++   l+de++l+em+eaa+kl+ + aa+++++++
  MMETSP1061-20121228|7325_1 517 DTIVQQNGDYEIKPTGSLEANgtGTVSVIPlgFVK-NMAEYMVAADVLISKAGPGTISEAAALSLPVMLTSFL--PGQEEGNVDYVVDGGFGSFCRDTD--TEAIAEEVVLWLNDELKLKEMSEAAKKLGHPFAARDIVQQI 653
                 55555555565554443333312222222211444.8*******************************99665..689999*****************8..89***********************************9986 PP

>> TIGR03088  stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   2.6e-08   2.2e-05     247     363 ..     533     650 ..     449     656 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 2.6e-08
   TIGR03088 247 lveaaGleklvwla.GertdiaellqalDvfvLpslaeGisntvLeamasglPviatav.....GGnaeLveegvtGklvpssdaealakalekYvsdkklikahGkaarerieqkfsleamv 363
                  +ea G +++  ++ G  +++ae + a+Dv++  s+a   + t+ ea a +lPv+ t+       Gn++ v +g  G +   +d+ea+a+ +  +++d+   k+  +aa++ + + f+ + +v
  MMETSP1061-20121228|7325_1 533 SLEANGTGTVSVIPlGFVKNMAEYMVAADVLI--SKA--GPGTISEAAALSLPVMLTSFlpgqeEGNVDYVVDGGFGSFCRDTDTEAIAEEVVLWLNDELKLKEMSEAAKK-LGHPFAARDIV 650
                 5566666666554339999**********876..554..488*************99754433369********************************9999998887765.45566666655 PP

>> TIGR00661  MJ1255: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.054        44      71     107 ..     181     214 ..     165     221 .. 0.72
   2 !   11.4   0.0   3.8e-05     0.031     228     304 ..     539     615 ..     524     634 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.054
   TIGR00661  71 lrkkellPkkalrrevkiireykpDlivsDfeyvtav 107
                 ++ + ++  + +r   k+i+ ykpD++vs     t+v
  MMETSP1061-20121228|7325_1 181 IKVMSVVCERSIR---KKIKAYKPDVVVSVHPLQTSV 214
                 5555555555555...55778*******977777765 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 3.8e-05
   TIGR00661 228 denvelrrlt.eddfkedlksaeavitsGGfelisEALalgkpllvvPvlgqfEqvsnAvklekLGlgevleykelel 304
                 ++ v +++l    ++ e +  a+ +i++ G  +isEA al  p++    l   E + n  ++ + G+g++   ++ e+
  MMETSP1061-20121228|7325_1 539 TGTVSVIPLGfVKNMAEYMVAADVLISKAGPGTISEAAALSLPVMLTSFLPGQEEG-NVDYVVDGGFGSFCRDTDTEA 615
                 56677777642469******************************999988776765.78999999*****99998843 PP

>> TIGR03999  thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   8.1e-06    0.0066     257     365 ..     544     652 ..     527     660 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.1e-06
   TIGR03999 257 vlflGkqdeveellslsDllllpsekesFGLaaLeamacgvpvias.....nvgGlpevveegetGflvevgdveemaekalklledeeklqelkkaalekakerfesekiveq 365
                 v  lG +++++e + ++D+l+  +   +    + ea a ++pv+ +     +  G  + v +g  G +++  d+e++ae+++  l+de kl+e+++aa +   + f+++ iv+q
  MMETSP1061-20121228|7325_1 544 VIPLGFVKNMAEYMVAADVLISKAGPGT----ISEAAALSLPVMLTsflpgQEEGNVDYVVDGGFGSFCRDTDTEAIAEEVVLWLNDELKLKEMSEAAKKLG-HPFAARDIVQQ 652
                 6668999999999999999876555444....3466666666654411111334555677788899999**************************9987766.99999999998 PP

>> TIGR03590  PseG: pseudaminic acid biosynthesis-associated protein PseG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.8   1.5e+03     170     192 ..       6      28 ..       3      38 .. 0.74
   2 ?   -1.2   0.0      0.33   2.7e+02     163     211 ..     310     362 ..     299     378 .. 0.56
   3 !   11.3   0.0   4.9e-05      0.04     231     267 ..     548     585 ..     533     594 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.8
   TIGR03590 170 klkrvlislGgvDkknltlkllk 192
                 ++++vl+++   D   + l++  
  MMETSP1061-20121228|7325_1   6 RKRKVLVCFTTKDTTYILLSIPT 28 
                 3599****999998877766655 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.33
   TIGR03590 163 eaakerkklkrvlislGgvDkknltlkllkalaeek....kklkitvvvgssn 211
                 e+++  + +++ l+++Gg       ++++ al  e      +  i vv g + 
  MMETSP1061-20121228|7325_1 310 EKLQLPAVDRKTLLVMGGGEGVGSLSNIVDALYVELvkqsVNAVIMVVCGRNE 362
                 33333335666777777766555555555555444422115566666666544 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 4.9e-05
   TIGR03590 231 edvenmaelmaeadlaigAaG.stswEravlglPslvi 267
                  +v+nmae m  ad++i+ aG +t  E+a+l+lP ++ 
  MMETSP1061-20121228|7325_1 548 GFVKNMAEYMVAADVLISKAGpGTISEAAALSLPVMLT 585
                 5799*************966648999********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.37
# Mc/sec: 2582.71
//
Query:       MMETSP1061-20121228|7330_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.7    1.8  19.6        9.3    1.5  13.6    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5  13.6    0.0023       9.3     866     976 ..      44     155 ..      22     158 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.0023
   TIGR00927 866 eevevegdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkveaeeeeeedekdegeed..eeei.addeevkdetgeqelnaenqgeakedekGvdgeggsdGGds 976
                 e+++  ++ede++ ++ ++ +++++ede   +  edgev+ de++ ++ ++++ +++d+kd++++d  ++++ + d +  +  ge+  + e++++++++e   d+e +s  G s
  MMETSP1061-20121228|7330_1  44 EDGNHTAHEDECHCDG-DHVHCEHEEDEAFCHC-EDGEVHCDEEDHDSHDDKDHDSHDDKDHDSHDdhDDHMcHCDGDEVHCLGEDWETLETKCHCEDGEVHCDEEAKSTSGAS 155
                 5566666666666444.4566777888888888.89999999987777766666555555433322002222122222233456666678899999999999999999888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1010.00
//
Query:       MMETSP1061-20121228|7331_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-22   76.2   2.0    2.9e-18   63.7   1.4    4.1  1  TIGR01979 sufS: cysteine desulfurase, SufS family
    7.3e-14   49.4   0.0    2.2e-09   34.6   0.0    3.9  4  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
    1.6e-11   42.1   0.0    1.3e-05   22.6   0.0    2.2  2  TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
      7e-10   36.4   0.0    2.4e-08   31.3   0.0    2.3  1  TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
      8e-09   32.5   0.5      4e-07   26.9   0.0    3.3  3  TIGR03402 FeS_nifS: cysteine desulfurase NifS
    6.8e-07   26.4   0.4    5.7e-06   23.4   0.1    2.4  2  TIGR02006 IscS: cysteine desulfurase IscS
    2.9e-06   24.2   0.0    1.4e-05   21.9   0.0    2.1  2  TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family
    9.9e-05   19.6   0.1     0.0083   13.3   0.0    2.9  2  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
    0.00026   18.2   0.6       0.16    9.0   0.0    2.9  3  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
     0.0021   14.9   0.0     0.0057   13.5   0.0    1.6  2  TIGR02539 SepCysS: Sep-tRNA:Cys-tRNA synthase


Domain annotation for each model (and alignments):
>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   1.4   7.1e-21   2.9e-18      82     398 ..      90     484 ..       8     489 .. 0.61

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 7.1e-21
   TIGR01979  82 eivftkgateslNlvaaslgesslke...............gdeivvseleHHanivpwqllakrkgaklkviel........dedgtldleeleelltektk.................lvaithvsNvlGtvnpveeiikla...................hevgalvlvDgaqavphlkvdvkeldvDflvfsgHK.llgptGiGvLygkkelLek..lpPf.egGGemieev..........slee.styaelP....lkfEaGtpniagvvglgaaieylekiglekieakekeltayalerle.eidglriygpkeeeeragiisfnvegvhahDvatlldeeGiavRsGhhCaqPlmk.rldveataRaslalYnteedvdalvealkkv 398
                 ei ++++at +     +++ +   +e                 +i+++e+e  an+v+  + a+ ++ +  v+ +        ++ g +dl++++++l+ + +                 +v+ithv   +G+vnpveei +++                   h + ++ lvD++q+v ++ v+v+++++D lv +g K l gp G G+Ly+ +++L +  +p      G  ++ v          +l++    + +P     +fE    +i+  +glg+a+   ++ gl +i++ +++l + +   le ++++++i ++ +     gi++f  ++v a  v   +  +G  +      ++Pl + + +v+  +Ras+    te+++ ++ ++l + 
  MMETSP1061-20121228|7331_1  90 EIALVESATVGWTRAFYAMVQRDEEErrarakvdpnlsssgSRVILITEAEYAANVVAACQWARDHDDQWMVLAIpssvtpsnNSTGIVDLKAFDKMLEGRFRyknklgeevlldpssisMVCITHVPTNSGIVNPVEEIGQRIasynqrqqekakhrreewtHYSSIKYLVDACQSVGQMDVNVQRIKCDALVATGRKyLRGPRGTGFLYVSNDILAQdiMPSHiDHYGCPVSSVpstasyqsgaQLQDnEVIQFAPregaKRFEFWESSISSRLGLGEAVCVAMEKGLADIARDIQQLSSLLRVTLEeKVPNIEIHHTDS--TTCGIVTFYCHDVDARTVQAEMWVRGFELSFVPATSTPLDSsTTNVPDLVRASISYTTTENEIYKFCDTLASY 484
                 55555555555444433333333322344555555555554444555555555555554444444443333222111111111234455555555554432111111111111111122289*****************9876522222222211211111112234689****************************9556***************75535543223344444331111111111111112223334223379***************************************99999637********887..69*************************************752689*********************9998765 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.082        34       4      62 ..      20      76 ..      17      93 .. 0.84
   2 ?    2.7   0.0     0.027        11     139     163 ..     209     234 ..     193     240 .. 0.83
   3 !   34.6   0.0   5.5e-12   2.2e-09     161     221 ..     250     310 ..     245     314 .. 0.93
   4 !    5.4   0.0    0.0041       1.7     249     373 ..     360     481 ..     334     484 .. 0.68

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.082
   TIGR01977  4 dnAattypKpdeviealadllkeeggsagrgserlalrasreveetReelaklfnveek 62
                ++A  + p p+ v + +++ l+ e+ s g++ +   +++s  ++e+ +++a l+++ e+
  MMETSP1061-20121228|7331_1 20 NHA-GASPSPQHVLDRVFSHLQLEQQSGGYAAQ-NSVQESGDLDEVYNNVARLIHATET 76
                444.44599****************88888765.56889999************99876 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.027
   TIGR01977 139 klivlshaSNvtGtilpieeia.ela 163
                  ++ ++h+    G++ p+eei+ ++a
  MMETSP1061-20121228|7331_1 209 SMVCITHVPTNSGIVNPVEEIGqRIA 234
                 6899*****************94444 PP

  == domain 3    score: 34.6 bits;  conditional E-value: 5.5e-12
   TIGR01977 161 elakekgilflvDaaqtaGvleidveklaidllaftGHKgLlgpqGiggllikekiklkpl 221
                 e+++ ++i  lvDa q++G ++++v++ + d+l+ tG K L gp G+g l+++++i  +++
  MMETSP1061-20121228|7331_1 250 EWTHYSSIKYLVDACQSVGQMDVNVQRIKCDALVATGRKYLRGPRGTGFLYVSNDILAQDI 310
                 789999***********************************************99977766 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0041
   TIGR01977 249 NtlgiagLkagikfiekigianikkkelkltekllegLkeikkvkiyGakdaakrvgvvSltlegldseevaail.dekfdivvRaGlHCaPlaHktigtlatGtiRlslgyfnteeeieklveal 373
                  + + +gL +++ +  + g+a+i++   +l + l  +L+  k  +i  ++  + + g+v +  +++d ++v a +  + f++        +Pl  +t  t     +R s++y +te+ei+k+ + l
  MMETSP1061-20121228|7331_1 360 SISSRLGLGEAVCVAMEKGLADIARDIQQLSSLLRVTLE-EKVPNIEIHHTDSTTCGIVTFYCHDVDARTVQAEMwVRGFELS-FVPATSTPLDSST--TNVPDLVRASISYTTTENEIYKFCDTL 481
                 555667888888888888888886655555555555555.3333444456677788899999988888888554404555443.3445677886665..555669***************998776 PP

>> TIGR03301  PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   1.5e-06   0.00061     117     156 ..     199     238 ..     188     241 .. 0.90
   2 !   22.6   0.0   3.1e-08   1.3e-05     154     207 ..     255     308 ..     249     315 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.5e-06
   TIGR03301 117 eelLaedpdithvavvHhEtttgiLnpleaiakvarshga 156
                 ee+L +  +i+ v+++H  t +gi+np+e+i++ + s+++
  MMETSP1061-20121228|7331_1 199 EEVLLDPSSISMVCITHVPTNSGIVNPVEEIGQRIASYNQ 238
                 7899999************************998877765 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 3.1e-08
   TIGR03301 154 hgavlivDavSslgaipidieeldvdaliasanKclegvpGlsFviarrdllea 207
                   ++ +vDa  s+g + +++++ ++dal+a+  K l+g  G +F+ + +d l++
  MMETSP1061-20121228|7331_1 255 SSIKYLVDACQSVGQMDVNVQRIKCDALVATGRKYLRGPRGTGFLYVSNDILAQ 308
                 67899******************************************9999987 PP

>> TIGR02326  transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   5.9e-11   2.4e-08     121     210 ..     199     307 ..     175     314 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 5.9e-11
   TIGR02326 121 ekilaadpeithvalvhsetttGilnPieavakvakry...................GkvlivdamssfGgieidiaeleidylissankciqGvPGfgfviakeaele 210
                 e++l +  +i+ v + h  t +Gi+nP+e++ + +  y                    ++++vda  s+G ++++++++++d+l+++  k ++G  G gf+   ++ l+
  MMETSP1061-20121228|7331_1 199 EEVLLDPSSISMVCITHVPTNSGIVNPVEEIGQRIASYnqrqqekakhrreewthysSIKYLVDACQSVGQMDVNVQRIKCDALVATGRKYLRGPRGTGFLYVSNDILA 307
                 788999999*********************9764332211111111111111111224578***************************************999888776 PP

>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   6.1e+02      87     110 ..     132     156 ..     112     190 .. 0.55
   2 !   26.9   0.0   9.8e-10     4e-07     163     219 ..     253     310 ..     202     317 .. 0.86
   3 ?    1.4   0.0     0.058        24     237     284 ..     362     409 ..     349     486 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.5
   TIGR03402  87 khiittavehpa.vlslceyLekeg 110
                 + i++t+ e++a v+++c++ + ++
  MMETSP1061-20121228|7331_1 132 RVILITEAEYAAnVVAACQWARDHD 156
                 4455566665554556666655533 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 9.8e-10
   TIGR03402 163 kekgvlfhtDavqavGkvpidlkeleidllslsghk.lhaPkgvgalyirkgvklepl 219
                 + + + + +Da q+vG++++++++++ d l  +g k l +P+g g ly+ + +  +++
  MMETSP1061-20121228|7331_1 253 HYSSIKYLVDACQSVGQMDVNVQRIKCDALVATGRKyLRGPRGTGFLYVSNDILAQDI 310
                 556788999*************************99789**********988766655 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.058
   TIGR03402 237 pgivglgkaielaaee.leeenekvkalRdrlekgllekipkarvnGdk 284
                 ++ +glg+a+ +a+e+ l++ ++++++l   l  +l ek+p+ +++  +
  MMETSP1061-20121228|7331_1 362 SSRLGLGEAVCVAMEKgLADIARDIQQLSSLLRVTLEEKVPNIEIHH-T 409
                 56679999999888654888888899999999999999999988763.3 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   1.4e-08   5.7e-06     171     217 ..     255     302 ..     202     306 .. 0.80
   2 ?   -2.3   0.0      0.91   3.7e+02     248     280 ..     365     398 ..     360     412 .. 0.61

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.4e-08
   TIGR02006 171 rkvlfhvdaaqsvGkvpidleelkvdllslsahk.iyGpkGiGalyvr 217
                  ++ + vda+qsvG+++++++++k d l  ++ k + Gp+G G lyv+
  MMETSP1061-20121228|7331_1 255 SSIKYLVDACQSVGQMDVNVQRIKCDALVATGRKyLRGPRGTGFLYVS 302
                 467899********************99988888468*********97 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.91
   TIGR02006 248 vGlGeafriakeelakdtar.vlklrdkllngie 280
                 +GlGea+ +a e+   d ar +++l   l+ ++e
  MMETSP1061-20121228|7331_1 365 LGLGEAVCVAMEKGLADIARdIQQLSSLLRVTLE 398
                 7999999999987555544424555544444444 PP

>> TIGR03403  nifS_epsilon: cysteine desulfurase, NifS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.63   2.6e+02     142     164 ..     209     231 ..     200     240 .. 0.83
   2 !   21.9   0.0   3.5e-08   1.4e-05     167     218 ..     253     305 ..     242     319 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.63
   TIGR03403 142 alvsvmwannetglifpikeige 164
                 ++v +     ++g+++p++eig+
  MMETSP1061-20121228|7331_1 209 SMVCITHVPTNSGIVNPVEEIGQ 231
                 678888889999*********97 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 3.5e-08
   TIGR03403 167 kekgvlfhtdavqavgkipvdvqkvkvdflsfsahkf.hgpkgvgalyikkgv 218
                 +  ++ +  da q+vg+++v+vq++k d l  +  k+  gp+g g ly+ + +
  MMETSP1061-20121228|7331_1 253 HYSSIKYLVDACQSVGQMDVNVQRIKCDALVATGRKYlRGPRGTGFLYVSNDI 305
                 566788899*******************99999998648**********9876 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     2e-05    0.0083     169     214 ..     257     303 ..     199     315 .. 0.79
   2 ?    1.9   0.0     0.058        24     246     308 ..     365     429 ..     360     440 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2e-05
   TIGR03235 169 vflhvDaaqvvgkiavdlsakridlisvsghk.iygPkGiGalvirk 214
                 + + vDa q+vg++ v++++ + d +  +g k + gP+G G l++ +
  MMETSP1061-20121228|7331_1 257 IKYLVDACQSVGQMDVNVQRIKCDALVATGRKyLRGPRGTGFLYVSN 303
                 44569*******************99999999468********9976 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.058
   TIGR03235 246 vGlgeaaeiarknaeake.kklralknklldaLkt..levklngdpaekipnvlnlsidgvnseal 308
                 +Glgea+ +a ++  a++ +  ++l   l+ +L++  ++++++   +++   ++ +  ++v++ ++
  MMETSP1061-20121228|7331_1 365 LGLGEAVCVAMEKGLADIaRDIQQLSSLLRVTLEEkvPNIEIHHT-DSTTCGIVTFYCHDVDARTV 429
                 79********99887776156899*********997778888866.77888899999999988765 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0004      0.16      17      77 ..      14      74 ..       7      78 .. 0.91
   2 !    5.5   0.0    0.0047       1.9     191     238 ..     259     308 ..     250     319 .. 0.83
   3 ?    0.0   0.0      0.21        88     301     397 ..     386     477 ..     367     481 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0004
   TIGR01976 17 edvvflDnpaGtqvPqsvldavsaaltrsnanrggayessrkadqvvddAreavadllnae 77
                ++ ++l  ++ +  Pq vld v ++l+  + + g a ++s++ +  +d+  ++va l+ a+
  MMETSP1061-20121228|7331_1 14 QKKIHLNHAGASPSPQHVLDRVFSHLQLEQQSGGYAAQNSVQESGDLDEVYNNVARLIHAT 74
                4679*************************99999999999999999************997 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0047
   TIGR01976 191 vvvDavhyaphaliDvqalgaDllvcsaykff.gPh.lGilvvraellks 238
                   vDa +      + vq + +D lv  + k++ gP   G+l+v +++l +
  MMETSP1061-20121228|7331_1 259 YLVDACQSVGQMDVNVQRIKCDALVATGRKYLrGPRgTGFLYVSNDILAQ 308
                 5799999999999*****************9758865899**99998765 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 0.21
   TIGR01976 301 eerlaerllagLs.dlplvtvyglqdekleervptvaftvaklapervvkrlaeqnvlvaaghfyavellrqLgleaeeGvvrvglahYntaeevdkl 397
                  ++l+  l  +L+ ++p + ++ +      +  ++v+f ++++ + +v  ++  ++  +      ++ +l++   +     vr+++   +t++e+ k+
  MMETSP1061-20121228|7331_1 386 IQQLSSLLRVTLEeKVPNIEIHHT----DSTTCGIVTFYCHDVDARTVQAEMWVRGFELSFVP-ATSTPLDSSTTN-VPDLVRASISYTTTENEIYKF 477
                 556666666666524788888885....46778999999999999999999877766654442.223334443333.444566666655555666555 PP

>> TIGR02539  SepCysS: Sep-tRNA:Cys-tRNA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.77   3.1e+02      76     108 ..     116     148 ..     108     231 .. 0.74
   2 !   13.5   0.0   1.4e-05    0.0057     173     224 ..     253     304 ..     242     322 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.77
   TIGR02539  76 reakfavmhalckeGdvvvldglahytsyvaae 108
                 r a+  v   l+  G  v+l + a y++ v a 
  MMETSP1061-20121228|7331_1 116 RRARAKVDPNLSSSGSRVILITEAEYAANVVAA 148
                 667777777888888888888888888776553 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.4e-05
   TIGR02539 173 rkkgvplllncaytvGrlpvsakevkadfivgsGhksmaasapvGvlalkee 224
                 +   +  l+++  +vG+++v+ + +k d +v++G k +      G l ++++
  MMETSP1061-20121228|7331_1 253 HYSSIKYLVDACQSVGQMDVNVQRIKCDALVATGRKYLRGPRGTGFLYVSND 304
                 556788999***************************9988888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 1661.71
//
Query:       MMETSP1061-20121228|7332_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2441.80
//
Query:       MMETSP1061-20121228|7335_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 283.78
//
Query:       MMETSP1061-20121228|7337_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 502.82
//
Query:       MMETSP1061-20121228|7339_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-08   30.4   1.4    5.4e-08   30.3   1.0    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   1.0   1.3e-11   5.4e-08       6     116 ..      35     143 ..       8     148 .] 0.85

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 1.3e-11
   TIGR00601   6 KtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvmvskkKavkakaaePaatpesaptptp.satpasvaekksaaPas 116
                 +   ++k+k+++ep +t+  +K++ie++++   ++  +q L ++ + + D kt++e++i   d + +  + +K    + ++P ++ +s +  +  ++ p + ++++ ++P+ 
  MMETSP1061-20121228|7339_1  35 REWDRKKIKLQVEPTDTIRSVKTRIEASED---IPSREQNLTFQKQPVDDPKTLEESNIRHLDVLYLGRGTPKDPLLTNTKPRTQKRSPTVNADgKSKPITSTTSPDTTPTP 143
                 567789**********************99...******************************9999999999998888888888877776666555555555555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.34
# Mc/sec: 574.54
//
Query:       MMETSP1061-20121228|7334_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 712.74
//
Query:       MMETSP1061-20121228|7342_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 803.93
//
Query:       MMETSP1061-20121228|7344_1  [L=853]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       410  (0.0999512); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.52
# Mc/sec: 2165.13
//
Query:       MMETSP1061-20121228|7341_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.8   0.0      0.047   11.7   0.0    1.5  1  TIGR02509 type_III_yopR: type III secretion effector, YopR family


Domain annotation for each model (and alignments):
>> TIGR02509  type_III_yopR: type III secretion effector, YopR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.2e-05     0.047      51      81 ..     165     194 ..     155     205 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.2e-05
   TIGR02509  51 gqqllvepaiDrleLrallrefdplgrqkea 81 
                 ++   v+++ D +eL++l+re dp+++q+ea
  MMETSP1061-20121228|7341_1 165 KE-NEVNLDDDAAELQSLVRERDPFSKQNEA 194
                 44.6789999*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 2243.81
//
Query:       MMETSP1061-20121228|7343_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-23   79.0   0.6      1e-22   78.6   0.4    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    9.5e-15   52.6   0.0      1e-14   52.4   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.6e-14   50.6   0.1    1.1e-13   49.4   0.0    1.6  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.3e-13   48.1   0.1    1.7e-13   47.7   0.1    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    5.2e-12   43.1   0.0    9.7e-12   42.3   0.0    1.4  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    2.7e-11   40.7   0.0    2.7e-11   40.7   0.0    2.1  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    6.1e-10   37.1   0.1    9.2e-10   36.5   0.0    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    4.1e-06   23.9   0.3    1.8e-05   21.8   0.2    1.9  2  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.4     2e-25     1e-22     213     333 ..      13     135 ..       3     173 .. 0.77

  Alignments for each domain:
  == domain 1    score: 78.6 bits;  conditional E-value: 2e-25
   TIGR01622 213 ipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD.vteesdaslask.fedsfdeseqsgldlnteereql 333
                 +++s  ++ ++vGnl fn tE++L+q F   G++ +v+l  D etG+ +G+ F++F+d + a  A+ ++N  el GR ++v +++  + e ++++l    ++ + + s  s+++  t++++ +
  MMETSP1061-20121228|7343_1  13 QQQSQLKHDIFVGNLAFNTTEEQLHQTFSDIGRVIKVRLVTDVETGKPRGFAFVEFEDPQAALSAIRNMNEYELNGRRLRVNFSNSsHLEALASKLGMDlSQHQTQRSSSSSTAAATQQTHGV 135
                 445777899**************************************************************************9994555555544322133334445555555555555444 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.0     2e-17     1e-14     277     418 ..      11     153 ..       7     286 .. 0.76

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 2e-17
   TIGR01628 277 qerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAq..rkeqRkarLqqqfmqasaesrql.sigspvigaanisgrhqaaqqqavvtqavkqql 418
                 q +++ +    ++v Nl  + ++e+L+++F+++G +  +++++d e++k +gF FV f ++++A  A+++++   lng+ L v++ +  + e+  ++L    +q++++   + s++  ++ ++   g+   a +  ++t+++ +++
  MMETSP1061-20121228|7343_1  11 QPQQQSQLKHDIFVGNLAFNTTEEQLHQTFSDIGRVIKVRLVTDvETGKPRGFAFVEFEDPQAALSAIRNMNEYELNGRRLRVNFSNssHLEALASKLGMDLSQHQTQRSSSsSTAAATQQTH---GVGTNAVADSLKTMSKGEMY 153
                 334455567789999999999999999999999999999999999999999999999999999999999999999999999999976114567777777777774444322213333333333...33334444444444444444 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   2.1e-16   1.1e-13     266     347 ..      16      98 ..       1     102 [. 0.85
   2 ?   -1.9   0.0      0.83   4.3e+02     221     241 ..     121     141 ..     101     168 .. 0.45

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 2.1e-16
   TIGR01661 266 dgagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktn 347
                 +   + ifv nl+ +t e  l q f++ G v +v+++ d++t k +G++fv   + + a  ai+ +n y+l +r l+v f  +
  MMETSP1061-20121228|7343_1  16 SQLKHDIFVGNLAFNTTEEQLhQTFSDIGRVIKVRLVTDVETGKPRGFAFVEFEDPQAALSAIRNMNEYELNGRRLRVNFSNS 98 
                 345678*******987666666*********************************************************9876 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.83
   TIGR01661 221 dflavlakrlqqhavaqqaaa 241
                 + +++ a  +q+h v ++a+a
  MMETSP1061-20121228|7343_1 121 SSSSTAAATQQTHGVGTNAVA 141
                 122222222222222222222 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.1   3.3e-16   1.7e-13     293     404 ..      16     126 ..       4     165 .. 0.81

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 3.3e-16
   TIGR01642 293 ldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakqatiekensdvlvtllakalsqsilq 404
                 ++ ++ +++gnL ++ +++q+++   + G +    l+ d++tG+ +G+aF+e++d+  +  Ai  +n  +l +++L v +      +a  +k   d+   + + ++s+s   
  MMETSP1061-20121228|7343_1  16 SQLKHDIFVGNLAFNTTEEQLHQTFSDIGRVIKVRLVTDVETGKPRGFAFVEFEDPQAALSAIRNMNEYELNGRRLRVNFSNSSHLEALASKLGMDLSQHQTQRSSSSST-A 126
                 567899***************************************************************************99999999999886665555555555554.3 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.0   1.9e-14   9.7e-12      55     135 ..      16      96 ..       6     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 1.9e-14
   TIGR01648  55 PerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGvcis 135
                  +   ++fvG +  +  e++l   f  +G++ ++rl+ d   Gk rG+afv f + ++a  a++++n+ye+ +Gr l v  s
  MMETSP1061-20121228|7343_1  16 SQLKHDIFVGNLAFNTTEEQLHQTFSDIGRVIKVRLVTDvETGKPRGFAFVEFEDPQAALSAIRNMNEYEL-NGRRLRVNFS 96 
                 456679*********************************557****************************8.7999988766 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   5.3e-14   2.7e-11      97     180 ..      10      95 ..       2     139 .. 0.88
   2 ?  -14.2  13.7         8   4.1e+03     282     407 ..     210     345 ..     188     351 .. 0.70

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 5.3e-14
   TIGR01645  97 vqrqqalaimsrv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvgr 180
                  q qq   +   + vG + f+  e+ l ++f+  G +  + +  d  t+k +gfafve e P+aal a  +mn   l Gr l+v+ 
  MMETSP1061-20121228|7343_1  10 QQPQQQSQLKHDIfVGNLAFNTTEEQLHQTFSDIGRVIKVRLVTDVETGKPRGFAFVEfEDPQAALSAIRNMNEYELNGRRLRVNF 95 
                 34555556667777**********************************************************************94 PP

  == domain 2    score: -14.2 bits;  conditional E-value: 8
   TIGR01645 282 dallqPatvsalPaaaavaaaaatakitaaeavagaavlglraqspatassslvtdieakavvssakkeae.evpalpqa.apavlkdeviteekPvaPsllai.PslvaplglvaPtei.......npsllaspq 407
                 ++l  P t  a P a a    + ta  t+a ++  +++   +a  p+++ + ++   + +a    a+ +a   vp+ p+  a  v ++ + + + P+aP l  + P+lv  +  ++P  i       + s+la +q
  MMETSP1061-20121228|7343_1 210 MTLPVPPTRVADPRARASDPRTLTAASTSASSAIPSSSDPRSAVNPVVPPAPVPPRADPRARDPRARAAAPpMVPPQPPHpAYGVPPPPMQPPPPPAAPGLANLdPALVRQVMSLTPEMIsqlpphkQQSILALRQ 345
                 5566666777777777777777776665555555555555688999999999999999988877777666557777776515555556666667778885555569999999999998777776666667777664 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   1.8e-12   9.2e-10     193     272 ..      19      96 ..       9     165 .. 0.68

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 1.8e-12
   TIGR01659 193 dtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrla 272
                   +++v nl+   t++ql+  f   g++++  ++ d  tgkprg afv f+  + a  ai  +n+   e   + l v ++
  MMETSP1061-20121228|7343_1  19 KHDIFVGNLAFNTTEEQLHQTFSDIGRVIKVRLVTDVETGKPRGFAFVEFEDPQAALSAIRNMNEY--ELNGRRLRVNFS 96 
                 45799*********************************************7666666666666554..333445555544 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.024        12     118     147 ..      22      51 ..       6      58 .. 0.81
   2 !   21.8   0.2   3.4e-08   1.8e-05       6     125 ..      23     153 ..      20     159 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.024
   TIGR01649 118 vivenllypvtlDvlyqifnrvGkVlrivi 147
                 + v nl +  t + l+q f+ +G+V ++ +
  MMETSP1061-20121228|7343_1  22 IFVGNLAFNTTEEQLHQTFSDIGRVIKVRL 51 
                 6799**********************9855 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 3.4e-08
   TIGR01649   6 HvRnlpeevveadlvelliefGkvsyvlvl......kgkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqyStskelkrdgn..akalsdvesvssgslal.....veaGlesagpnkVLrvivenlly 125
                  v nl  + +e +l +  ++ G+v  v ++      k +  A+vEfed ++A +++  +  ++ +++Gr + v++S+s +l+        +ls++++  s+s +         G+ ++ +   L+++ +  +y
  MMETSP1061-20121228|7343_1  23 FVGNLAFNTTEEQLHQTFSDIGRVIKVRLVtdvetgKPRGFAFVEFEDPQAALSAIRNM--NEYELNGRRLRVNFSNSSHLEALASklGMDLSQHQTQRSSSSSTaaatqQTHGVGTNAVADSLKTMSKGEMY 153
                 67788888899999999999999887766522222244568***********9999876..678899**************9988434235554443333333331111233334444444445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.25
# Mc/sec: 1858.41
//
Query:       MMETSP1061-20121228|7348_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1402.38
//
Query:       MMETSP1061-20121228|7349_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 699.54
//
Query:       MMETSP1061-20121228|7350_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1479.38
//
Query:       MMETSP1061-20121228|7356_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 628.52
//
Query:       MMETSP1061-20121228|7358_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-37  126.0   1.5    4.6e-37  125.8   1.1    1.0  1  TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR03160  cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.8   1.1   1.1e-40   4.6e-37      41     191 ..       4     163 ..       1     165 [. 0.90

  Alignments for each domain:
  == domain 1    score: 125.8 bits;  conditional E-value: 1.1e-40
   TIGR03160  41 kpelekkavlvfagdhGvaa......egVsafPqevtaqmvenflaggaainvlarqagaeleVvdvgvkkdleeep..elikkkvrrGtaniaeepAmseeeaeaaleaGielveeaa.eegadllvlGemGigNTtaaaallaallgleveevvGrGt 191
                 +p+++   +++fagdhGvaa      eg s +Pq vt++++e + ++ a+ +vla+ +g++l Vvdvgv  d+ +    + +++k+++Gt+n+  epAms ee+e++l++G++++++a+ +e++++++lGe+GigNTt+a++l+aal+g +ve++ G G+
  MMETSP1061-20121228|7358_1   4 SPKADAVNAIIFAGDHGVAAapedggEGCSLYPQVVTRAILEGLQRNVAGASVLAKGLGLKLSVVDVGVLGDPYSGTfvNSATNKLAKGTRNFCVEPAMSIEEMERCLKIGKDTIAQAVeKENCKVVALGEVGIGNTTTASTLIAALTGKSVEDLCGGGA 163
                 678889999**********86666667*********************************************855441155678999*************************98877761578**********************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 876.41
//
Query:       MMETSP1061-20121228|7359_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.5    2.6   9.6        8.1    2.8   6.7    1.0  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   6.7     0.002       8.1     281     313 ..      16      46 ..       1      52 [] 0.44

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.002
   TIGR02031 281 qeeppppPpPpepesegeeeedeeeeeeeekee 313
                 ++ ++ +P P+++e+  ++++d+e+e++e++e+
  MMETSP1061-20121228|7359_1  16 EN-QEYDPDPDDDEK-EDDDDDDEKEDDEDNED 46 
                 22.334455554433.23333333333333433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 311.97
//
Query:       MMETSP1061-20121228|7361_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 540.53
//
Query:       MMETSP1061-20121228|7360_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1372.69
//
Query:       MMETSP1061-20121228|7363_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 652.61
//
Query:       MMETSP1061-20121228|7365_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00031   17.9  17.8    0.00038   17.6  12.4    1.1  1  TIGR02794 tolA_full: protein TolA
  ------ inclusion threshold ------
        2.8    3.2  12.1        3.5    2.9   8.4    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        3.3    4.2  10.8        4.9    3.7   7.5    1.1  1  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6  12.4   2.8e-07   0.00038      53     172 ..      93     222 ..      67     226 .] 0.39

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.8e-07
   TIGR02794  53 rlqqqekkaakke..........pkpeepkqerqkkleqqaeeakkkqa.aeqarqkelekqraaaekaak.kaeeaak.ekeekkkqaeeakakqaaEakakaeaea..KaekkakeeAakkaEeeakakaaae 172
                 +++ ++ +++kk+          p++ ++k+ r + + + a+    +++  +  + +++   + ++e ++  +  +aa+  + ++ k++ e   k+aaE+k + +ae+  K ++ ++e A+ +aE++a+ +a+++
  MMETSP1061-20121228|7365_1  93 QPSDERRNQKKKPllkkvlgavkPNRWRKKDRRDSSVLEGAASSDDDKNiNNNDENDDT---DTEDEIESSsSTRKAAQkDAIARLKAEVES--KRAAEKKDRLQAEQddKLKRAEAEVARLRAEAKARQEAEEA 222
                 45555555555556665777744333334444444433333322222220222222222...222222222111111110111122222222..22333333333333111111111113333333332222222 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   8.4    0.0025       3.5     745     833 ..     130     218 ..      86     225 .. 0.41

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0025
   TIGR00927 745 qgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeee 833
                  + +a +++  + ++++++ +t++e e +  s + ++ ++++  + ++e e +  ae+k+  + e + + k+ae +  +   e +a +e
  MMETSP1061-20121228|7365_1 130 LEGAASSDDDKNINNNDENDDTDTEDEIESSSSTRKAAQKDAIARLKAEVESKRAAEKKDRLQAEQDDKLKRAEAEVARLRAEAKARQE 218
                 22233333333333333333334444444444444444444444444444444444444444444444333333332222222222221 PP

>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.5    0.0036       4.9     206     269 ..     153     216 ..     149     223 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0036
   TIGR01932 206 lsdelsesiynRmrsEreaiArkyRsqGeekaeelrakaekEvvkiLseAereariikgegdae 269
                  +de+ +s   R  + ++aiAr    + +++a+e + +++ E+   L +Ae+e +++++e+ a+
  MMETSP1061-20121228|7365_1 153 TEDEIESSSSTRKAAQKDAIARLKAEVESKRAAEKKDRLQAEQDDKLKRAEAEVARLRAEAKAR 216
                 579999*******************************************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       273  (0.0665529); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 994.32
//
Query:       MMETSP1061-20121228|7368_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-05   19.5   0.0      4e-05   19.4   0.0    1.0  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
  ------ inclusion threshold ------
      0.018   12.1   0.0      0.022   11.8   0.0    1.1  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.021   11.6   0.0      0.024   11.4   0.0    1.1  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
      0.021   11.5   0.0      0.024   11.3   0.0    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.031   11.1   0.0      0.034   10.9   0.0    1.0  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
      0.032   10.8   0.0      0.037   10.7   0.0    1.1  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   5.8e-08     4e-05     168     210 ..       3      49 ..       1      62 [. 0.81

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 5.8e-08
   TIGR01372 168 hcDvLvvGaGpaGLaaA....raAaraGarvilvdeqaeaGGsllse 210
                  cD L++G+G+ G+a         +++ +rv++vd++ + GG+ +++
  MMETSP1061-20121228|7368_1   3 ECDYLIIGGGACGMAFVdtllAHSGDQNLRVVMVDKHDAPGGQWHDS 49 
                 5*************96522112457888**************98876 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.2e-05     0.022      21      62 ..       3      47 ..       2      59 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.2e-05
   TIGR00292 21 esDviivGaGpsGLta.ayylakeg...lkvvvlerklaiGGGswg 62
                e D +i+G+G+ G++     la+ g   l+vv+++++ a+GG  w 
  MMETSP1061-20121228|7368_1  3 ECDYLIIGGGACGMAFvDTLLAHSGdqnLRVVMVDKHDAPGG-QWH 47
                67999*********96156789988999**********9986.565 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.4e-05     0.024       2      39 ..       5      42 ..       4      56 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.4e-05
   TIGR01989  2 DvvivGgGlvGlalAaalkknpslkdkkvllldavdap 39
                D +i GgG  G+a+  +l +++  ++++v ++d +dap
  MMETSP1061-20121228|7368_1  5 DYLIIGGGACGMAFVDTLLAHSGDQNLRVVMVDKHDAP 42
                889*******************************9987 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.5e-05     0.024       1      37 [.       5      45 ..       5      60 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.5e-05
   TIGR01988  1 divIvGgGlvGlalAlaLassa...dlkvalveakaaek.a 37
                d +I+GgG  G+a+  +L +++   +l+v +v++++a+  +
  MMETSP1061-20121228|7368_1  5 DYLIIGGGACGMAFVDTLLAHSgdqNLRVVMVDKHDAPGgQ 45
                679**********9988877767999*********998652 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0     5e-05     0.034       3      45 ..       5      51 ..       3      63 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5e-05
   TIGR00031  3 dyiivGaGlsGivlae.ilakl...nkrvlvvekrnhiGGncydevd 45
                dy+i+G G  G+ + +  la+    n rv++v+k +  GG  +d  d
  MMETSP1061-20121228|7368_1  5 DYLIIGGGACGMAFVDtLLAHSgdqNLRVVMVDKHDAPGGQWHDSYD 51
                9**********99988444443222679************9888766 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   5.4e-05     0.037       1      35 [.       5      42 ..       5      56 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.4e-05
   TIGR01984  1 dviivGgglvGlslAlaLsrks...klkialieaksae 35
                d +i+Ggg  G+++  +L ++s   +l++ ++++++a 
  MMETSP1061-20121228|7368_1  5 DYLIIGGGACGMAFVDTLLAHSgdqNLRVVMVDKHDAP 42
                568***********999998888999********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 451.81
//
Query:       MMETSP1061-20121228|7362_1  [L=1463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.13s 00:00:00.73 Elapsed: 00:00:00.55
# Mc/sec: 3510.91
//
Query:       MMETSP1061-20121228|7371_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2655.01
//
Query:       MMETSP1061-20121228|7372_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 855.29
//
Query:       MMETSP1061-20121228|7373_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 546.81
//
Query:       MMETSP1061-20121228|7369_1  [L=2000]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-07   26.1   0.0     0.0046   13.8   0.0    2.2  2  TIGR02037 degP_htrA_DO: peptidase Do
    0.00085   16.3   0.0     0.0068   13.3   0.0    2.0  2  TIGR00225 prc: C-terminal processing peptidase


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   3.4e-05      0.07     258     288 ..     309     339 ..     300     347 .. 0.90
   2 !   13.8   0.0   2.2e-06    0.0046     263     332 ..     994    1064 ..     986    1089 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.4e-05
   TIGR02037 258 akGalvaevlkgspAekaGlkaGDvilkvng 288
                 +kG lv++v kg  A +aG+++GD+i+ v+ 
  MMETSP1061-20121228|7369_1 309 RKGWLVTDVDKGLCAGRAGVRVGDIIIGVES 339
                 6899**********************99875 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.2e-06
   TIGR02037  263 vaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilR.kgkekeikvtlkeaee 332 
                  v +v +gspA k Gl+  D++ ++ng + ++++ +++ ++++    ++k+++    g+++ei+  l++ ++
  MMETSP1061-20121228|7369_1  994 VGRVRHGSPAYKVGLRMHDIVESINGMRYSHFSGISALVTSILGAPNIKIQLPEcLGRNNEISTILSTVKD 1064
                  7899************************************9988888888875424666666666665444 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.036        75      67      92 ..     315     340 ..     300     374 .. 0.84
   2 !   13.3   0.0   3.3e-06    0.0068      45     145 ..     971    1076 ..     964    1085 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.036
   TIGR00225  67 vsplegsPAekagikpgDkIikvdgk 92 
                 +++ +g  A +ag+++gD Ii+v+  
  MMETSP1061-20121228|7369_1 315 TDVDKGLCAGRAGVRVGDIIIGVESD 340
                 5556777899*************876 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.3e-06
   TIGR00225   45 ttsgeleGiGiqvqmedd..eivivsplegsPAekagikpgDkIikvdgksvagme.lddavelirGkkgtkvkle..ieragkkktlelelkrekieletvkaev 145 
                  +t ++  G G ++   ++   + +  + +gsPA+k g++ +D + +++g      + +  +v  i G ++ k++l   + r+++  t+  ++k +k+ l++v++++
  MMETSP1061-20121228|7369_1  971 ETGSNSFGWGFEIVRWRNerFLRVGRVRHGSPAYKVGLRMHDIVESINGMRYSHFSgISALVTSILGAPNIKIQLPecLGRNNEISTILSTVKDAKVRLSPVAISI 1076
                  55555667777765433323788888999********************9776654499****************5447788888999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2000 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.87u 0.14s 00:00:01.01 Elapsed: 00:00:00.67
# Mc/sec: 3939.97
//
Query:       MMETSP1061-20121228|7370_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.055   11.2   1.4        1.3    6.7   0.0    3.1  2  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA


Domain annotation for each model (and alignments):
>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0   0.00032       1.3     125     150 ..     239     264 ..     178     265 .. 0.89
   2 ?    1.7   0.4     0.012        48      98     124 ..     486     514 ..     471     517 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00032
   TIGR03927 125 illlvliaglillliagiyflirkvk 150
                  l+ v+ +++i+++++ iyf+ ++v+
  MMETSP1061-20121228|7370_1 239 SLVSVASMVTIVAIVIYIYFACPDVR 264
                 5788999****************997 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.012
   TIGR03927  98 qLFsseyeqtsssseste..eeetektss 124
                  L+ ++ e+t++++++t+  +++t++t++
  MMETSP1061-20121228|7370_1 486 PLGRDAMEATTTTTTTTTttTTTTTTTKW 514
                 56666667777777666642444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 2289.07
//
Query:       MMETSP1061-20121228|7375_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 411.81
//
Query:       MMETSP1061-20121228|7366_1  [L=1910]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1910 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.79u 0.15s 00:00:00.94 Elapsed: 00:00:00.76
# Mc/sec: 3317.09
//
Query:       MMETSP1061-20121228|7380_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 618.26
//
Query:       MMETSP1061-20121228|7377_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-20   69.7   0.1      1e-13   49.2   0.0    4.1  4  TIGR00537 hemK_rel_arch: putative methylase
    2.3e-11   41.4   0.0    1.8e-09   35.2   0.0    2.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    8.3e-06   23.2   0.0    4.3e-05   20.9   0.0    1.9  2  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
    1.1e-05   22.4   0.0     0.0031   14.4   0.0    2.5  1  TIGR00536 hemK_fam: methyltransferase, HemK family
    0.00056   17.1   0.0      0.057   10.6   0.0    2.4  2  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific


Domain annotation for each model (and alignments):
>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.1     0.018        15       1      16 [.      59      74 ..      59      77 .. 0.89
   2 ?    3.5   0.0     0.013        11      15      32 ..     161     179 ..     154     191 .. 0.72
   3 !    9.2   0.0   0.00023      0.19      42      84 ..     211     255 ..     205     261 .. 0.74
   4 !   49.2   0.0   1.2e-16     1e-13      66     175 ..     257     372 ..     246     376 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.018
   TIGR00537  1 vyePaedsllleknlr 16
                vyeP++d+ ll ++++
  MMETSP1061-20121228|7377_1 59 VYEPSDDTYLLIDAIK 74
                8*********999875 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.013
   TIGR00537  15 lrelkndd.vleiGaGtGl 32 
                 l+ l+  + v+eiG+G+G+
  MMETSP1061-20121228|7377_1 161 LKRLERIEtVMEIGTGSGV 179
                 555555444*********7 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00023
   TIGR00537  42 kkivatdinPfavkllkenaklnnvel..dvlesdlfenvegkfd 84 
                   i+atd+nP a k +++ ak n++ +       d+ ++ e+k +
  MMETSP1061-20121228|7377_1 211 FSIIATDLNPLALKFAERTAKENGILVgnTTNSDDIDDGKEKKAS 255
                 579*****************9999655213344566666666655 PP

  == domain 4    score: 49.2 bits;  conditional E-value: 1.2e-16
   TIGR00537  66 veldvlesdlfenveg....kfdvilfnpPyleleedekrgdyldlaidGGkdGrkvidrfldelpeilk.egGrvqlvqsslsdeketldklk.elGfkveivaerklffeellv 175
                 + ++++e dl+ ++ g    k dv+lfnpPy+++++ e  g+ +++++ GG+dGr+v dr l ++   l+ + G+  ++    +   e  +kl  e G+++    +r+ f e l v
  MMETSP1061-20121228|7377_1 257 RAMEFVECDLASSLLGrlggKVDVLLFNPPYVPTDDSEICGNGIEISWAGGQDGRRVTDRALPQIARLLRrPDGVCYMITVDDNLPCELAKKLRvEYGLQMTPLVRRRAFNEYLSV 372
                 567888888887754322239**********************************************9973689999998888877777777754677777777777777766655 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   2.2e-12   1.8e-09      83     211 ..     160     327 ..     144     340 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 2.2e-12
   TIGR03534  83 elkkke.klkvlDlgtGsGaIalalakel....................pdakviavDiseeAlkvarkNakrlglke.....................veflksdlleal..eekgkfdlivsNPPYipeaekeeleeevrkfEPklALvggedGldlyrriaeeaakllke 211
                 +lk+ e   +v+++gtGsG+    l k+l                    + +++ia+D+++ Alk a++ ak++g+                       +ef++ dl ++l  +  gk+d+++ NPPY+p+++ e    +      + +  gg+dG  +  r + ++a+ll++
  MMETSP1061-20121228|7377_1 160 QLKRLErIETVMEIGTGSGVPITYLSKRLllekafsaqstesndnddinSGFSIIATDLNPLALKFAERTAKENGILVgnttnsddiddgkekkasvraMEFVECDLASSLlgRLGGKVDVLLFNPPYVPTDDSEIC-GNGI----EISWAGGQDGRRVTDRALPQIARLLRR 327
                 4433332459*********99999999989*************************************999999876432223344555566666776667777777788889999***************6665555.5544....488999999999999999999998853 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.16   1.3e+02     110     136 ..     210     236 ..     202     248 .. 0.83
   2 !   20.9   0.0   5.3e-08   4.3e-05     137     211 ..     261     331 ..     249     358 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.16
   TIGR03704 110 avelhaadidpaavrcarrnladaGgr 136
                 +  + a+d++p a++ a r  +++G  
  MMETSP1061-20121228|7377_1 210 GFSIIATDLNPLALKFAERTAKENGIL 236
                 57789************9999998854 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 5.3e-08
   TIGR03704 137 vyeGdlyealptelrGrvdillanvpyvptdeiallppeardheprvaldGGadGldvlrrvaaeaadwl.apGGa 211
                   e dl  +l  +l G+vd+ll n pyvptd+ ++           ++  GG dG  v  r   + a+ l  p G 
  MMETSP1061-20121228|7377_1 261 FVECDLASSLLGRLGGKVDVLLFNPPYVPTDDSEICG-----NGIEISWAGGQDGRRVTDRALPQIARLLrRPDGV 331
                 56899**************************976654.....4456777888888777766555544444245555 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.8e-06    0.0031     166     235 ..     258     326 ..     147     336 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.8e-06
   TIGR00536 166 rveliqsnlleslakq...kidlivsNPPYidkedladkeeevkfEPllALvggkdGlkilkkiieqakeylk 235
                  +e++  +l +sl +    k+d++  NPPY++  d +   + +    +   +gg+dG + + + + q++ +l 
  MMETSP1061-20121228|7377_1 258 AMEFVECDLASSLLGRlggKVDVLLFNPPYVPTDDSEICGNGI----EISWAGGQDGRRVTDRALPQIARLLR 326
                 2556666666666665899***************999885555....34566777777777777777777665 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.0   0.0    0.0067       5.5     106     134 ..     151     179 ..     135     191 .. 0.80
   2 !   10.6   0.0     7e-05     0.057     180     243 ..     269     327 ..     251     340 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0067
   TIGR03533 106 aelieeefapllekeevkrvldlctGsGC 134
                 +e i++++++l + e++++v+++ tGsG 
  MMETSP1061-20121228|7377_1 151 SEKISSRLQQLKRLERIETVMEIGTGSGV 179
                 67799999999999*************94 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 7e-05
   TIGR03533 180 dlfealegkkydlivsnPPYvdaeelaelpeEyrhEPelalaagedGldlvrrilaeaaeyLee 243
                  l  +l g k d+++ nPPYv +++ +     + +  e++ a+g+dG  ++ r l + a+ L+ 
  MMETSP1061-20121228|7377_1 269 SLLGRL-GGKVDVLLFNPPYVPTDDSEI----CGNGIEISWAGGQDGRRVTDRALPQIARLLRR 327
                 333334.6799***********999765....455668999************99999998863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1411.55
//
Query:       MMETSP1061-20121228|7381_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1555.18
//
Query:       MMETSP1061-20121228|7383_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   15.6   5.3      0.065   11.2   0.4    3.9  4  TIGR01639 P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
     0.0082   14.3   1.3       0.12   10.5   0.0    2.3  2  TIGR01878 cas_Csa5: CRISPR type I-A/APERN-associated protein Csa5


Domain annotation for each model (and alignments):
>> TIGR01639  P_fal_TIGR01639: Plasmodium falciparum uncharacterized domain TIGR01639
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.019        40       6      17 ..       1      12 [.       1      13 [. 0.86
   2 ?    0.2   0.0     0.088   1.8e+02      15      32 ..      33      50 ..      31      59 .. 0.60
   3 !    3.3   0.0    0.0092        19       7      25 ..      98     116 ..      95     117 .. 0.84
   4 !   11.2   0.4   3.2e-05     0.065       5      24 ..     112     131 ..     109     133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.019
   TIGR01639  6 lskkltkEelne 17
                +++++t+E++ e
  MMETSP1061-20121228|7383_1  1 MADQYTEEQIAE 12
                579*******87 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.088
   TIGR01639 15 lnelinsLdeivnrndml 32
                l ++++sL + +  +++ 
  MMETSP1061-20121228|7383_1 33 LGAVLRSLGNQPTEEEVE 50
                556666666666555543 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.0092
   TIGR01639   7 skkltkEelnelinsLdei 25 
                 + ++t+Eel ++  +L e 
  MMETSP1061-20121228|7383_1  98 NGSITAEELRNIFINLGEK 116
                 6689********9999885 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 3.2e-05
   TIGR01639   5 dlskkltkEelnelinsLde 24 
                 +l  klt+Ee++++in+ d+
  MMETSP1061-20121228|7383_1 112 NLGEKLTDEEISDMINEADK 131
                 67889***********9776 PP

>> TIGR01878  cas_Csa5: CRISPR type I-A/APERN-associated protein Csa5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   6.1e-05      0.12      71      90 ..      40      59 ..       2      63 .. 0.80
   2 ?    2.8   0.1     0.015        31      69      90 ..     111     132 ..      72     139 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.1e-05
   TIGR01878 71 vgylptdkevekflrlvred 90
                +g  pt++eve+++r++++d
  MMETSP1061-20121228|7383_1 40 LGNQPTEEEVEDLMREADKD 59
                5689************9998 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.015
   TIGR01878  69 ilvgylptdkevekflrlvred 90 
                 i +g+  td+e+ ++++++++d
  MMETSP1061-20121228|7383_1 111 INLGEKLTDEEISDMINEADKD 132
                 344577799****999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 983.32
//
Query:       MMETSP1061-20121228|7379_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0042   15.1  20.7      0.031   12.2   0.0    3.7  4  TIGR00880 2_A_01_02: multidrug resistance protein
     0.0045   13.9   0.3     0.0045   13.9   0.2    2.4  2  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
  ------ inclusion threshold ------
       0.02   12.1   0.1       0.02   12.1   0.0    2.9  3  TIGR00900 2A0121: H+ Antiporter protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   2.3e-05     0.031      11      74 ..     164     226 ..     154     243 .. 0.73
   2 ?    1.5   0.0     0.047        65      78     140 ..     271     333 ..     253     334 .. 0.89
   3 ?   -3.1   0.1       1.2   1.6e+03     103     111 ..     454     462 ..     444     479 .. 0.59
   4 !    6.3   7.3    0.0015       2.1      33     135 ..     512     617 ..     509     622 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.3e-05
   TIGR00880  11 qlvvsplsglltdrvGrkpvllvglfifvlsqllfals...snitvliiarilqGfgaaaalvagaa 74 
                  +v+ p+ g+l+dr Grk+  +    ++ + ++ + l      +++l+++r+++G++++  +++  +
  MMETSP1061-20121228|7379_1 164 GAVTTPITGPLIDRCGRKKSAI----LYCVLEMGINLLeqyPFLAGLLVSRMVGGITTNLLSSVFET 226
                 4577889999999*****9655....55555555555533367899************998887655 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.047
   TIGR00880  78 diikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllpe 140
                 d+i+++e++v++  ++++ +l+ i +  l  +la+ +g   +f  ++   ++a++++ fl+ e
  MMETSP1061-20121228|7379_1 271 DVIANNEYEVIMRDAVVVSNLASIASGYLAHLLAERYGPVGPFQGAVSCTGMALVAISFLWRE 333
                 899999999999999999999999999999999999999999999999999999999999876 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.2
   TIGR00880 103 GpllGavla 111
                 G+++Ga++a
  MMETSP1061-20121228|7379_1 454 GLIFGAFMA 462
                 444444443 PP

  == domain 4    score: 6.3 bits;  conditional E-value: 0.0015
   TIGR00880  33 vglfifvlsqllfals.......snitvliiarilqGfgaaaalvagaaliadiikee.ersvalgllsagialgpilGpllGavlaqalgwralflilallallafilll 135
                 +g++ +++++l+f+ s       +++++ + a+++  f  ++ ++   +++++++ +   r+ ++++  ++++l+++lG ll+  +a+       f+++a+l+  + +l+l
  MMETSP1061-20121228|7379_1 512 LGMSYMFAAALMFVPSilqkaspESFSIALAAFFIYEFLVGVTVTC-EGVARSLYLPSdGRATMMMVPRMIVNLAVSLGVLLTKCIATQ----SAFVAVAFLMSCSGALQL 617
                 5666666666666666666666799999999999999999987665.5888888766559***************************77....356666666666666555 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   3.3e-06    0.0045      37      77 ..     153     194 ..     150     217 .. 0.86
   2 ?    0.6   2.0     0.037        50     230     326 ..     509     610 ..     482     629 .. 0.51

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.3e-06
   TIGR00883  37 tlatfavgFlaRplGaivfGalgDrlGRkkt.LvvtlllMgi 77 
                 +++ +a+gF+a  +   + G l+Dr+GRkk+ ++  +l Mgi
  MMETSP1061-20121228|7379_1 153 VASLYALGFVAGAVTTPITGPLIDRCGRKKSaILYCVLEMGI 194
                 67899***********************98625567888887 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.037
   TIGR00883 230 glviatsvlfYllttylasYlkktaklglsaesallvlllalillllviplsgl....lsdriGrrkvlilltvlaalla...vpllsallesssillvlllll 326
                  + ++ s +f  +  +++s l+k+     s + al++  +  +l+ +++ + g+    +    Gr +++++  +++ l +   v+l ++++++s++++v++l+ 
  MMETSP1061-20121228|7379_1 509 EFLLGMSYMFAAALMFVPSILQKASP--ESFSIALAAFFIYEFLVGVTVTCEGVarslYLPSDGRATMMMVPRMIVNLAVslgVLLTKCIATQSAFVAVAFLMS 610
                 45555555555556666666666644..4555555555566666666666555311113334466666555444333322000233333343334444444444 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.4e-05      0.02      33      72 ..     150     189 ..     140     197 .. 0.81
   2 ?   -2.7   0.0      0.46   6.2e+02     243     272 ..     448     477 ..     431     485 .. 0.76
   3 ?    2.2   2.7     0.014        19     277     356 ..     510     593 ..     496     624 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.4e-05
   TIGR00900  33 asvlslaalagllplvvvspiaGvlvDRldrkkvmvgaDl 72 
                 +  ++   ++g+++ +v++pi G+l+DR  rkk ++ + +
  MMETSP1061-20121228|7379_1 150 GFNVASLYALGFVAGAVTTPITGPLIDRCGRKKSAILYCV 189
                 55566777899**********************8887655 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 0.46
   TIGR00900 243 rssvevgvvlaafglGallGalllgllgky 272
                  ++ ++g++  af+++ + G+l  + +++ 
  MMETSP1061-20121228|7379_1 448 SGEPAYGLIFGAFMAAGVTGGLCAPYIRQA 477
                 556788999999999999999988877765 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.014
   TIGR00900 277 alitiavlviglailvlgllnp.n...lllllvlaaaiGvvvglinviigtllqrsvpaellgRVfglqeslssaaaplglila 356
                 +l+ +++++++ +++v+++l+      + + l++ ++  + vg++ +  g  +    p++ ++  + + ++++ +a +lg++l 
  MMETSP1061-20121228|7379_1 510 FLLGMSYMFAAALMFVPSILQKaSpesFSIALAAFFIYEFLVGVTVTCEGVARSLYLPSDGRATMMMVPRMIVNLAVSLGVLLT 593
                 566666777777777777776654566777777777777777777777777777777787777777777777777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 2496.48
//
Query:       MMETSP1061-20121228|7382_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   19.5   7.8    0.00011   19.5   5.4    1.6  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.24   9.8e+02     308     327 ..      60      79 ..      59     116 .. 0.68
   2 !   19.5   5.4   2.6e-08   0.00011      22      69 ..     445     494 ..     438     500 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.24
   TIGR00599 308 DskePvkkreLlRqLleWer 327
                 D  +P  + eL +qL  W  
  MMETSP1061-20121228|7382_1  60 DRGDPERRDELRKQLAWWIS 79 
                 66789999999999999954 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 2.6e-08
   TIGR00599  22 pldtslRChvCkdffkaPvl.tsCsHtFCslCiRrcLse.epkCPlCrae 69 
                  +  ++ C +C+   k P   tsC+H FC  C+ r++s+  p+CPlCra+
  MMETSP1061-20121228|7382_1 445 RVSAAVVCTICRSDRKHPAApTSCGHVFCWDCLLRWISTvRPECPLCRAP 494
                 5677899*****999999765***********988887538*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 2083.83
//
Query:       MMETSP1061-20121228|7384_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 3061.13
//
Query:       MMETSP1061-20121228|7385_1  [L=1031]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-13   46.3  18.8     0.0012   16.3   0.0    7.2  6  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    2.1e-12   44.3  17.6    0.00067   16.2   0.3    6.2  4  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    1.4e-11   40.9  18.6     0.0074   12.0   0.0    6.5  6  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    9.2e-06   23.3  15.8       0.15    9.7   0.2    6.8  7  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    5.7e-05   21.6  16.4      0.025   13.0   0.3    8.2  9  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
     0.0072   12.5   2.8       0.25    7.4   0.0    3.1  4  TIGR01418 PEP_synth: phosphoenolpyruvate synthase
  ------ inclusion threshold ------
       0.02   12.9   0.5       0.79    7.9   0.0    3.5  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.42   2.5e+02      28      93 ..      23      88 ..       9      97 .. 0.78
   2 !   15.7   0.2   3.1e-06    0.0018      32     101 ..     209     278 ..     189     280 .. 0.93
   3 !   11.8   0.1   4.8e-05     0.028      30      85 ..     389     444 ..     374     459 .. 0.86
   4 !   16.3   0.0     2e-06    0.0012      20      99 ..     580     659 ..     572     664 .. 0.89
   5 ?    1.5   0.0     0.068        40     165     210 ..     667     710 ..     662     723 .. 0.82
   6 !    7.4   0.4    0.0011      0.63      42      88 ..     840     886 ..     832     895 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.42
   TIGR02521 28 ekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAlt 93
                  +a+ + + a++++++  l    e+ +k l ldp +++++     ++  +ge++kA +  + +++
  MMETSP1061-20121228|7385_1 23 IMVASLYSNRAVTFYRERRLGPSVEDCNKSLDLDPTSEKTYIRKWRALDAMGEKDKALACLQAGVK 88
                566778888889999999999999999999999999999998888888888888888776666665 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 3.1e-06
   TIGR02521  32 kirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101
                 + + + a++Y++++++++  e+ + A+e +p+ ++ +   A ++  l +++ A +  ++A +l pn+ +v
  MMETSP1061-20121228|7385_1 209 ELYSNRAVTYYRNKQYQESLEDCDMAIERNPEAEKSYIRKARALVGLDRQSDASKCLQEAHKLFPNSKKV 278
                 567789***********************************************************99876 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 4.8e-05
   TIGR02521  30 aakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAe 85 
                  a+ + + a++Y++ ++++   ++ ++A+eldpk +++++  A ++ ++++ + A 
  MMETSP1061-20121228|7385_1 389 LASLYANRAVTYYRDQEFALSVRDCDNAIELDPKGEKPYSRKARALASMQRYDDAI 444
                 57889999*******************************99999988888877775 PP

  == domain 4    score: 16.3 bits;  conditional E-value: 2e-06
   TIGR02521  20 esskkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                 ++ + ++re aa+ + + a++Y++++++++  ++ +kA+e+dpk ++ +     +++ lg  + A +  + Al+  p++ 
  MMETSP1061-20121228|7385_1 580 AEHTLEGRELAANLYANRAVTYFREKKFRETVNDCNKAVEYDPKHEKSYIRKWRALMALGAFDDAFRCLESALKELPDSE 659
                 5677788999****************************************9999999********999999999877765 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.068
   TIGR02521 165 dpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgi 210
                 ++++ ++ll+ ++  +++++y++A ++le   +t+     +LwL +
  MMETSP1061-20121228|7385_1 667 NATEEKKLLTTVNQFIDNRDYQQAHNILEDIVKTSD--NVALWLTA 710
                 678889999999999*************99888765..45678765 PP

  == domain 6    score: 7.4 bits;  conditional E-value: 0.0011
   TIGR02521  42 leqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesf 88 
                 l ++++e+A ++  +A+ l+ ++  a+ +   +y  lg+l++A ++ 
  MMETSP1061-20121228|7385_1 840 LLSDQYESALADCAEAISLKHDNLTAWTVKTEVYYALGRLQEARDEL 886
                 56789**************************************9875 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.3   1.1e-06   0.00067     126     213 ..     162     261 ..     116     263 .. 0.84
   2 !   11.1   0.2   3.9e-05     0.023     129     214 ..     348     444 ..     332     471 .. 0.73
   3 !   13.8   0.1     6e-06    0.0035     332     395 ..     592     655 ..     547     662 .. 0.81
   4 ?    2.0   0.1     0.023        14     174     236 ..     843     905 ..     792     920 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.1e-06
   TIGR00990 126 yaaklkekGnkayrnkdfdkaielyskalllkedPvy............ysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyada 213
                  a +lk++ n  +++ d d+a  ly+ al + +   +            ysnra  y    ++++ +ed   a+e +p+  k   r+a a  +l + +da
  MMETSP1061-20121228|7385_1 162 RAERLKKQANAKFNKGDIDNARTLYTEALGCIPTTGFysrgvkallselYSNRAVTYYRNKQYQESLEDCDMAIERNPEAEKSYIRKARALVGLDRQSDA 261
                 5889****************************9987723333333333357*******************************************999987 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 3.9e-05
   TIGR00990 129 klkekGnkayrnkdfdkaielyskalllked.....Pv......yysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadal 214
                 klk + n  +++ d   a  ly+ a+ + ++      v       y+nra  y    ++   v d  +a+eldp+  k   r+a a   + +y da+
  MMETSP1061-20121228|7385_1 348 KLKRNANAKFNRGDVAGARLLYTEAMGVLPNdrdneAVrtclasLYANRAVTYYRDQEFALSVRDCDNAIELDPKGEKPYSRKARALASMQRYDDAI 444
                 6666666666666666666666666654332122221222222279***********************************************9996 PP

  == domain 3    score: 13.8 bits;  conditional E-value: 6e-06
   TIGR00990 332 lalelrGifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkd 395
                   +  r +  f   k +e+ +d +k++e dP+ ++syi++    + lg+ d+a   ++ alk+ 
  MMETSP1061-20121228|7385_1 592 NLYANRAVTYFREKKFRETVNDCNKAVEYDPKHEKSYIRKWRALMALGAFDDAFRCLESALKEL 655
                 4456666667777888899999999999999999999988777778888888888888888864 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.023
   TIGR00990 174 adlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqave 236
                  ++e  ++d ++a+ l+ d   a   +++ y  lg+ ++a  +l+a     + r+e +++a  
  MMETSP1061-20121228|7385_1 843 DQYESALADCAEAISLKHDNLTAWTVKTEVYYALGRLQEARDELAAARKTWGARNETIEDAYK 905
                 578899999999999999999999999999999999999999999999999999999988755 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.047        27     710     780 ..      33     104 ..       5     113 .. 0.71
   2 !   10.5   0.3   3.5e-05     0.021     125     230 ..     163     279 ..     154     286 .. 0.60
   3 !    4.8   0.1    0.0019       1.1     208     260 ..     405     457 ..     350     482 .. 0.75
   4 !   12.0   0.0   1.3e-05    0.0074     116     191 ..     582     657 ..     541     661 .. 0.85
   5 !   11.5   0.1   1.8e-05     0.011     227     343 ..     671     789 ..     658     814 .. 0.46
   6 !    8.8   0.5   0.00011     0.067     166     244 ..     836     917 ..     831     919 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.047
   TIGR02917 710 GdlalrqkdykaAiqaykkalkrapss.qtvikLaeallasgntaeAaktleawLkehpkdavlrtalAely 780
                 + +  r+ ++   ++  +k l + p+s +t i+  +al a g++ +A + l+a  ke p + +l+  l +++
  MMETSP1061-20121228|7385_1  33 AVTFYRERRLGPSVEDCNKSLDLDPTSeKTYIRKWRALDAMGEKDKALACLQAGVKELPSSSKLNEQLRKSL 104
                 555566666667777777888888888778888888888888888888888888888888888777665555 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 3.5e-05
   TIGR02917 125 aellalrglAaLglgeleeAqksleqAlaiapks......leaklgl.....AqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaal 230
                 ae l  +++A++++g+ ++A+  + +Al   p+        +a l+      A+    +++++e  +  d +++ +p++ +++  k+  l  ++ +  A + +++a +l pn+++++
  MMETSP1061-20121228|7385_1 163 AERLKKQANAKFNKGDIDNARTLYTEALGCIPTTgfysrgVKALLSElysnrAVTYYRNKQYQESLEDCDMAIERNPEAEKSYIRKARALVGLDRQSDASKCLQEAHKLFPNSKKVK 279
                 566666777777777777777777777765554311111133443321111244445555777777777777777777777777777777777777777777777777777766654 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0019
   TIGR02917 208 nieeAlaayrkaielkpnaiaallalatilleegefeeAekkadallkkapns 260
                 ++++ + + ++aiel+p+ ++++ ++a +l + ++++ A k +++ ++++p s
  MMETSP1061-20121228|7385_1 405 EFALSVRDCDNAIELDPKGEKPYSRKARALASMQRYDDAIKCLEEGKRQVPGS 457
                 34444555667777777777777777777777777777777777777777665 PP

  == domain 4    score: 12.0 bits;  conditional E-value: 1.3e-05
   TIGR02917 116 ksslddeeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpk 191
                  +++ +e aa+l+a r++++++++++ e  ++ ++A + +pk  ++ + + + ++a + +d+a   ++ +L++ p+
  MMETSP1061-20121228|7385_1 582 HTLEGRELAANLYANRAVTYFREKKFRETVNDCNKAVEYDPKHEKSYIRKWRALMALGAFDDAFRCLESALKELPD 657
                 5667788899999999999999999999999999999999999999999999999999999999999999998776 PP

  == domain 5    score: 11.5 bits;  conditional E-value: 1.8e-05
   TIGR02917 227 iaallalatilleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedAretlqaalksapeylpalllaGaseyqlgeleqAeqylnqilkaa...PnshqArrllAaiqLkeg 343
                 +++ll  ++  + + ++ +A++ ++ ++k   n      + A  d   + ++ A+  ++++l ++p++ +al + G + +  ge+eq  + l++ l+ +    ++++A  +l a q k++
  MMETSP1061-20121228|7385_1 671 EKKLLTTVNQFIDNRDYQQAHNILEDIVKTSDNVALW-LTAARADSFLGMTDLALVRVEKVLGFNPKHAEALRVRGYATFLSGEMEQGINLLKESLEGDieeTENRKASAILQACQVKMN 789
                 3444444444444444444444444444444333221.2223333333444444444444444444444444444444444444444444444444422111233444444444444444 PP

  == domain 6    score: 8.8 bits;  conditional E-value: 0.00011
   TIGR02917 166 AqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaie...lkpnaiaallalatilleegefe 244
                 A  +l  +++++a a  +e+++ + +n  A+ +k ++ +++g  +eA +++  a++   ++ + i++ + +    l++++++
  MMETSP1061-20121228|7385_1 836 AEASLLSDQYESALADCAEAISLKHDNLTAWTVKTEVYYALGRLQEARDELAAARKtwgARNETIEDAYKKTDFELRLQKVD 917
                 7777888999999999999999999999999999999999999999987776555422267777777777777777777776 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.054        32      80     131 ..      54     102 ..      50     108 .. 0.77
   2 ?   -2.6   0.0       1.5   8.7e+02      20      41 ..     165     186 ..     161     190 .. 0.83
   3 !    9.7   0.2   0.00025      0.15      59     132 ..     215     285 ..     209     289 .. 0.88
   4 ?    2.9   0.0      0.03        18      78     111 ..     416     449 ..     397     471 .. 0.85
   5 ?    1.7   0.1      0.07        41      73     131 ..     612     670 ..     594     675 .. 0.80
   6 ?   -3.1   0.0       2.2   1.3e+03       8      35 ..     728     755 ..     726     759 .. 0.86
   7 !    9.3   0.6   0.00033      0.19      17     117 ..     787     894 ..     772     907 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.054
   TIGR02552  80 aldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraea 131
                  ld+ + + + +    l a+gek +Al++L++ ++   +++   +l+e+ ++
  MMETSP1061-20121228|7385_1  54 DLDPTSEKTYIRKWRALDAMGEKDKALACLQAGVKELPSSS---KLNEQLRK 102
                 677888888888889999*************9988777666...45554444 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.5
   TIGR02552  20 aiYalAYnlyqqgkyeeAeklF 41 
                  + ++A + +++g+ ++A++l+
  MMETSP1061-20121228|7385_1 165 RLKKQANAKFNKGDIDNARTLY 186
                 5678899999999999999986 PP

  == domain 3    score: 9.7 bits;  conditional E-value: 0.00025
   TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeam 132
                 a+++ + k+y+e ++  ++a   ++++ + + + a  l+ l+++ +A k+L+ a ++  +++   ++ke+ +++
  MMETSP1061-20121228|7385_1 215 AVTYYRNKQYQESLEDCDMAIERNPEAEKSYIRKARALVGLDRQSDASKCLQEAHKLFPNSK---KVKEELSKI 285
                 56777899*************************************************99888...555555555 PP

  == domain 4    score: 2.9 bits;  conditional E-value: 0.03
   TIGR02552  78 aaaldlddprpvyhaaecllalgekeeAlkaLkl 111
                 a  ld++  +p+ + a  l  ++++ +A k+L+ 
  MMETSP1061-20121228|7385_1 416 AIELDPKGEKPYSRKARALASMQRYDDAIKCLEE 449
                 78999**************************986 PP

  == domain 5    score: 1.7 bits;  conditional E-value: 0.07
   TIGR02552  73 aaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraea 131
                 +    a+  d+++ + + +    l+alg   +A ++L+ a++   ++e+ +e   +a +
  MMETSP1061-20121228|7385_1 612 NDCNKAVEYDPKHEKSYIRKWRALMALGAFDDAFRCLESALKELPDSERMKEEMANATE 670
                 555668888999999999************************99999987776666655 PP

  == domain 6    score: -3.1 bits;  conditional E-value: 2.2
   TIGR02552   8 ksllgldeeqleaiYalAYnlyqqgkye 35 
                 +++lg+++++ ea+   +Y+ + +g+ e
  MMETSP1061-20121228|7385_1 728 EKVLGFNPKHAEALRVRGYATFLSGEME 755
                 6789999999999999*******99986 PP

  == domain 7    score: 9.3 bits;  conditional E-value: 0.00033
   TIGR02552  17 qleaiYalAYnlyqqgkyeeAeklFqlLaa..ldpteak...ywlgL...aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae 117
                 +++++++ + + +++g+y+eA++lF++ +    +p   +   y + L   a++    ++ye A+a  a a +l+ d+  +     e+++alg+ +eA++ L++a ++ +
  MMETSP1061-20121228|7385_1 787 KMNTFHK-GQARVKRGRYREAVELFTMVMEdgSEPIPRQaplYGILLterAEASLLSDQYESALADCAEAISLKHDNLTAWTVKTEVYYALGRLQEARDELAAARKTWG 894
                 5555543.55667788888888888776542223332221114333334467777889*******************************************99988766 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.32   1.8e+02      86     114 ..      70      98 ..      61     112 .. 0.68
   2 ?   -1.6   0.0       1.4   8.4e+02      79     100 ..     166     187 ..     157     196 .. 0.59
   3 !   13.0   0.3   4.3e-05     0.025      47     115 ..     216     281 ..     199     285 .. 0.92
   4 ?    2.0   0.0      0.11        65      47      83 ..     432     468 ..     423     484 .. 0.81
   5 ?   -2.2   0.0       2.3   1.3e+03      60      99 ..     530     569 ..     526     573 .. 0.79
   6 ?    1.9   0.0      0.12        71      46     111 ..     598     660 ..     586     668 .. 0.63
   7 ?    2.3   0.0     0.092        54       2      31 ..     671     700 ..     670     717 .. 0.86
   8 ?    2.0   0.0      0.11        67       6      27 ..     791     812 ..     787     820 .. 0.63
   9 ?    1.3   0.1      0.19   1.1e+02      38      81 ..     869     912 ..     833     921 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.32
   TIGR02795  86 lqelgqkekAkktlqevikrYPkssaakl 114
                 l ++g+k+kA + lq  +k+ P+ss+ ++
  MMETSP1061-20121228|7385_1  70 LDAMGEKDKALACLQAGVKELPSSSKLNE 98 
                 45666666666666666666666665444 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.4
   TIGR02795  79 llklgeslqelgqkekAkktlq 100
                 l k++++  + g+ ++A++ ++
  MMETSP1061-20121228|7385_1 166 LKKQANAKFNKGDIDNARTLYT 187
                 4444555555555555554444 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 4.3e-05
   TIGR02795  47 ealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaakla 115
                  ++y++k+y+++ +    +++++p+ ek   + ++ +++l+ l+++++A k lqe  k +P+s++ k++
  MMETSP1061-20121228|7385_1 216 VTYYRNKQYQESLEDCDMAIERNPEAEK---SYIRKARALVGLDRQSDASKCLQEAHKLFPNSKKVKEE 281
                 589******************9999887...589*****************************998875 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.11
   TIGR02795  47 ealyakkkykdAakaflevvkkypksekapdallklg 83 
                  al + + y+dA+k  +e  ++ p s+k  + l+k+ 
  MMETSP1061-20121228|7385_1 432 RALASMQRYDDAIKCLEEGKRQVPGSDKLEEELVKIK 468
                 5778889999999999999999999999999999864 PP

  == domain 5    score: -2.2 bits;  conditional E-value: 2.3
   TIGR02795  60 kaflevvkkypksekapdallklgeslqelgqkekAkktl 99 
                 ++f   +k +p++  +++ l k++++  + g+   A+  +
  MMETSP1061-20121228|7385_1 530 QEFDLPTKIDPEEFERAEKLKKQANAKLNKGDVPGARILY 569
                 5666677778888899999999999999999888887666 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.12
   TIGR02795  46 GealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssa 111
                 + +++++kk+++  +  +++v+ +pk+ek+    ++  ++l +lg  ++A + l+   k+ P+s+ 
  MMETSP1061-20121228|7385_1 598 AVTYFREKKFRETVNDCNKAVEYDPKHEKS---YIRKWRALMALGAFDDAFRCLESALKELPDSER 660
                 557788888888888888888888888775...344445555555555555555555555555554 PP

  == domain 7    score: 2.3 bits;  conditional E-value: 0.092
   TIGR02795   2 eeaeykaallvlkegdYakAeqaFkaFlkk 31 
                 e++    ++++++++dY++A + +++ +k+
  MMETSP1061-20121228|7385_1 671 EKKLLTTVNQFIDNRDYQQAHNILEDIVKT 700
                 6777788999**********9999888775 PP

  == domain 8    score: 2.0 bits;  conditional E-value: 0.11
   TIGR02795   6 ykaallvlkegdYakAeqaFka 27 
                 +++++  +k+g+Y++A + F+ 
  MMETSP1061-20121228|7385_1 791 FHKGQARVKRGRYREAVELFTM 812
                 4455556666677777666654 PP

  == domain 9    score: 1.3 bits;  conditional E-value: 0.19
   TIGR02795  38 apnAqYwlGealyakkkykdAakaflevvkkypksekapdallk 81 
                 + + +Y lG ++ a+ ++++A k++ +  ++ ++  k  d  l+
  MMETSP1061-20121228|7385_1 869 KTEVYYALGRLQEARDELAAARKTWGARNETIEDAYKKTDFELR 912
                 55667888888888888888888877777776666666665555 PP

>> TIGR01418  PEP_synth: phosphoenolpyruvate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0063       3.7     142     169 ..      12      40 ..       6      45 .. 0.83
   2 ?   -1.3   0.0      0.18   1.1e+02     151     174 ..     203     226 ..     201     242 .. 0.82
   3 !    7.4   0.0   0.00043      0.25     149     172 ..     383     406 ..     373     411 .. 0.86
   4 ?   -3.3   0.1      0.73   4.3e+02     155     174 ..     590     609 ..     587     612 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0063
   TIGR01418 142 kgeeevlekvkkvfasLftdrais.Yres 169
                 k e++++++v+ + asL+++ra++ Yre+
  MMETSP1061-20121228|7385_1  12 KIESDIIQEVRIMVASLYSNRAVTfYRER 40 
                 456789****************9736665 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.18
   TIGR01418 151 vkkvfasLftdraisYreskgfdh 174
                 vk  ++ L+++ra++Y ++k +++
  MMETSP1061-20121228|7385_1 203 VKALLSELYSNRAVTYYRNKQYQE 226
                 899999********9888777765 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.00043
   TIGR01418 149 ekvkkvfasLftdraisYreskgf 172
                 e+v++++asL+++ra++Y ++++f
  MMETSP1061-20121228|7385_1 383 EAVRTCLASLYANRAVTYYRDQEF 406
                 789*************99877776 PP

  == domain 4    score: -3.3 bits;  conditional E-value: 0.73
   TIGR01418 155 fasLftdraisYreskgfdh 174
                  a L+++ra++Y ++k f++
  MMETSP1061-20121228|7385_1 590 AANLYANRAVTYFREKKFRE 609
                 589*********99999875 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.28   1.7e+02       8      25 ..     432     449 ..     431     449 .. 0.90
   2 ?    7.9   0.0    0.0013      0.79      11      33 ..     798     820 ..     796     820 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.28
   TIGR00756   8 sglckagrveeAlelfde 25 
                 ++l+   r+++A+++++e
  MMETSP1061-20121228|7385_1 432 RALASMQRYDDAIKCLEE 449
                 689999********9986 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0013
   TIGR00756  11 ckagrveeAlelfdeMkergivP 33 
                 +k+gr++eA+elf   +e+g +P
  MMETSP1061-20121228|7385_1 798 VKRGRYREAVELFTMVMEDGSEP 820
                 799*****************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1031 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.64u 0.15s 00:00:00.79 Elapsed: 00:00:00.53
# Mc/sec: 2567.56
//
Query:       MMETSP1061-20121228|7386_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025    9.1   0.8      0.027    9.0   0.6    1.0  1  TIGR01257 rim_protein: rim ABC transporter


Domain annotation for each model (and alignments):
>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.6   6.7e-06     0.027     558     594 ..       5      42 ..       2      47 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 6.7e-06
   TIGR01257 558 pwtsslpphvkykirmdidvvekt.nkikdrywdsgpr 594
                 pw+s l   vk k+++ + v +k  +k+kd+  d   r
  MMETSP1061-20121228|7386_1   5 PWCSVLSAAVKVKVKVKVKVKDKDkDKVKDKVKDKDSR 42 
                 9********************995379****9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       318  (0.0775232); expected 82.0 (0.02)
Passed bias filter:                      219  (0.0533886); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 321.36
//
Query:       MMETSP1061-20121228|7388_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 456.89
//
Query:       MMETSP1061-20121228|7387_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 851.93
//
Query:       MMETSP1061-20121228|7392_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 607.15
//
Query:       MMETSP1061-20121228|7389_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.45
# Mc/sec: 1478.28
//
Query:       MMETSP1061-20121228|7395_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|7397_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0046   14.2   0.0     0.0059   13.8   0.0    1.1  1  TIGR01136 cysKM: cysteine synthases
  ------ inclusion threshold ------
      0.019   12.0   0.0      0.023   11.8   0.0    1.1  1  TIGR01139 cysK: cysteine synthase A
      0.039   11.3   0.0      0.049   11.0   0.0    1.1  1  TIGR01138 cysM: cysteine synthase B


Domain annotation for each model (and alignments):
>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.3e-06    0.0059       7      32 ..      69      95 .]      63      95 .] 0.91

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.3e-06
   TIGR01136  7 ntPlvrln.lseelkaevlvKlEsrnP 32
                 tPlv+l+ +++ +  +++vK+Es+nP
  MMETSP1061-20121228|7397_1 69 GTPLVELKrVKQLIGRSIFVKMESMNP 95
                59******9999999***********9 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.7e-05     0.023       7      32 ..      69      95 .]      62      95 .] 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.7e-05
   TIGR01139  7 ntPlvrLn.laeeakaevlvkleslnP 32
                 tPlv+L+ +++ +  +++vk+es+nP
  MMETSP1061-20121228|7397_1 69 GTPLVELKrVKQLIGRSIFVKMESMNP 95
                59******777888999*********9 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   3.6e-05     0.049       8      34 ..      69      95 .]      62      95 .] 0.92

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 3.6e-05
   TIGR01138  8 ntplvrlkrllpeedsevlvklegnnp 34
                 tplv lkr++   +  ++vk+e+ np
  MMETSP1061-20121228|7397_1 69 GTPLVELKRVKQLIGRSIFVKMESMNP 95
                69************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 626.95
//
Query:       MMETSP1061-20121228|7400_1  [L=941]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       307  (0.0748415); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.32
# Mc/sec: 3881.30
//
Query:       MMETSP1061-20121228|7403_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 829.65
//
Query:       MMETSP1061-20121228|7405_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 999.35
//
Query:       MMETSP1061-20121228|7409_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 450.96
//
Query:       MMETSP1061-20121228|7408_1  [L=838]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 2836.07
//
Query:       MMETSP1061-20121228|7410_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1302.68
//
Query:       MMETSP1061-20121228|7415_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1042.02
//
Query:       MMETSP1061-20121228|7414_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1148.31
//
Query:       MMETSP1061-20121228|7412_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1099.91
//
Query:       MMETSP1061-20121228|7421_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.3    2.7  18.8       0.56    6.4   1.7    2.1  2  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   1.7   0.00014      0.56      44      88 ..      34      78 ..       9      87 .. 0.82
   2 ?    2.0   6.0     0.003        12      53      77 ..     169     193 ..     164     218 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00014
   TIGR03490 44 enkPkkpkkpdnkeksensnnksnseekdeeepkskkpekkpdps 88
                   P +++++ n+++++n+nnksn+  +   +  ++ pe   dp 
  MMETSP1061-20121228|7421_1 34 TAIPDSSRNEMNNKNNNNNNNKSNNGRSLYYQRYNSYPEYCSDPT 78
                557999999999999999999999988888888888777777776 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.003
   TIGR03490  53 pdnkeksensnnksnseekdeeepk 77 
                  +n+e+++n+nnk+n+++++ ++ +
  MMETSP1061-20121228|7421_1 169 DENNENKNNNNNKKNNNNNNRNKES 193
                 3444444555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1739.86
//
Query:       MMETSP1061-20121228|7417_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|7425_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00093   16.5   1.2    0.00093   16.5   0.8    1.4  2  TIGR00900 2A0121: H+ Antiporter protein
      0.007   14.3   5.5       0.27    9.2   1.7    2.4  2  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.8   4.5e-07   0.00093     190     351 ..      52     209 ..      20     216 .. 0.78
   2 ?   -3.7   0.0      0.59   1.2e+03     155     179 ..     245     269 ..     242     279 .. 0.58

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4.5e-07
   TIGR00900 190 lseavlrdileGlkfvlknklLrtllllallfnlvfapiisvllpyvtskvlrrssvevgvvlaafg...lGallGalllgllgkylkraalitiavlviglailvlgllnpnlllllvlaaaiGvvvglinviigtllqrsvpaellgRVfglqeslssaaapl 351
                 l  ++lr  l+ ++++ ++++Lr l++ ++l+++v++    +l+ ++ ++ l+++++  g++ ++     lG +l +++l  l   l ++ l+ ++ +   +  l+ gl+ +     ++ a+ ++ v +l  ++  +l  ++v ++ +gRV g+  +l  + +++
  MMETSP1061-20121228|7425_1  52 L--SLLRRPLDEMAILNREPILRLLAVASFLAAAVYSTDS-SLVLFYIEDHLGVTER--GIANMFVVmglLGVILQGIGLQPLIYALGEHGLLLVSFVSGTIHNLLYGLARN--AGTITVALSLSQVTKLGYPVLSSLCSQRVGPHEQGRVQGALLALNALGGAV 209
                 3..4788888889************************999.6666777774666555..55555444001455566666667777888888888888888888888888885..8888889999999**************************988877666555 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.59
   TIGR00900 155 gikaailvdavgflisallivsvri 179
                 g+ ++++v     +++ +++v+++ 
  MMETSP1061-20121228|7425_1 245 GPGTMFVVASGLYFLGTIVVVVISC 269
                 5555566666666666666666655 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.9   0.00036      0.74      52     106 ..      72     126 ..      61     133 .. 0.90
   2 !    9.2   1.7   0.00013      0.27       3     106 ..     111     213 ..     110     222 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00036
   TIGR00880  52 tvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpll 106
                  +l++a +l++  +++ ++ +  +i d    +er+ a +++++g+   ++ G+ l
  MMETSP1061-20121228|7425_1  72 RLLAVASFLAAAVYSTDSSLVLFYIEDHLGVTERGIANMFVVMGLLGVILQGIGL 126
                 5799****************************************99998888876 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00013
   TIGR00880   3 llagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpll 106
                 ++++  lg+++ ++ +++l+  +G + +llv+++  ++ +ll  l++n  ++ +a  l+ ++     ++  +l +  + ++e +++ g l+a  alg  +Gp++
  MMETSP1061-20121228|7425_1 111 FVVMGLLGVILQGIGLQPLIYALGEHGLLLVSFVSGTIHNLLYGLARNAGTITVALSLSQVT-KLGYPVLSSLCSQRVGPHEQGRVQGALLALNALGGAVGPVV 213
                 4555557888889999999999********************************99997765.68999999******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1882.28
//
Query:       MMETSP1061-20121228|7423_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.083    8.3   3.6        0.1    8.0   2.5    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
       0.18    8.0  15.2       0.23    7.7  10.6    1.1  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.5   5.1e-05       0.1     704    1004 ..      84     154 ..      32     167 .. 0.47

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 5.1e-05
   TIGR00927  704 ltqtkkeeskdeeepaklpevtvtpapapedkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeene 1004
                   +                                                                                                                                                                                                                                      + +++ +d+++ qe++a ++ +   d+   +++++++  d e++ +++ + + ++ +++eee ++e + 
  MMETSP1061-20121228|7423_1   84 SS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DGKHDDNDDNDLQEASAPIHYNDFGDNIANNNNNNNNQDDNEDDSNNNTNTNTNNTNNNEEEFDDEYER 154 
                  11......................................................................................................................................................................................................................................122223333344444444444444444444444444444444444444332222222222222222223 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7  10.6   0.00011      0.23       6     130 ..      18     150 ..      13     153 .. 0.47

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00011
   TIGR03490   6 lllsilpissis...llsvvsCsttssnskqpekkpeakpeenk....Pkkpkkpdnkeksensnnksnseekdeeepkskkpekkpdpsknk..eeiekpkkepkkpd.kkpqadepnndhadqknnnkvdfsd 130
                 l ls+l+i +     ++ + s s  ssns        ++p+  +    P   +k    + s  s+ +s+s  k++++ ++   e    +  n+  ++i ++++++++ d ++++++++ n++++++nnn+ +f d
  MMETSP1061-20121228|7423_1  18 LVLSLLLITLHAatgFVILSSSSSSSSNSALFRTTTLIRPSHSQrqyrPAHMSKSS--RSSSISSSSSSSDGKHDDNDDNDLQEASAPIHYNDfgDNIANNNNNNNNQDdNEDDSNNNTNTNTNNTNNNEEEFDD 150
                 56666666654311144555666666676644444444554433000044433333..22333333334444444444443333333322222225666666666655535556666666688899999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1179.10
//
Query:       MMETSP1061-20121228|7424_1  [L=777]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    7.2   8.5        3.6    5.5   0.5    3.6  4  TIGR00347 bioD: dethiobiotin synthase


Domain annotation for each model (and alignments):
>> TIGR00347  bioD: dethiobiotin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.11   4.4e+02      44      83 ..     273     315 ..     250     332 .. 0.69
   2 ?    4.5   0.1    0.0018       7.3      42      87 ..     325     373 ..     307     385 .. 0.70
   3 ?   -0.8   0.1     0.079   3.3e+02      44      84 ..     378     421 ..     368     435 .. 0.74
   4 ?    5.5   0.5   0.00087       3.6      48     101 ..     646     699 ..     576     701 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.11
   TIGR00347  44 eDaetl...knlkateedldevtpyafkePlsPllaakeEgrk 83 
                 eD++tl   +++k+t++ l++  p  ++e ls    +k+Eg++
  MMETSP1061-20121228|7424_1 273 EDSSTLptvEHVKNTNDALETKRPKPLDESLSDRSTSKHEGSN 315
                 5555551115566677777788899999999999999999885 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0018
   TIGR00347  42 taeDaetlknl...kateedldevtpyafkePlsPllaakeEgrkidle 87 
                 +++D++tl +    k+t + l++  p +f+ePls    +k+Eg++   +
  MMETSP1061-20121228|7424_1 325 KTNDTSTLYTAehvKNTGDVLNTDRPKQFDEPLSDRSSSKHEGSNSMKK 373
                 24777777655000555555667789****************9864444 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.079
   TIGR00347  44 eDaetlknlkateedld...evtpyafkePlsPllaakeEgrki 84 
                 +D++tl + +  e++ d   +  p + +ePls    +k+Eg+++
  MMETSP1061-20121228|7424_1 378 NDTSTLPTAEYEENTSDapnTNRPKQSEEPLSDRSTSKHEGSNF 421
                 7788887777666666655466799999************9975 PP

  == domain 4    score: 5.5 bits;  conditional E-value: 0.00087
   TIGR00347  48 tlknlkateedldevtpyafkePlsPllaakeEgrkidleelekklkeleeked 101
                   ++l+ t++ +  +  ++ ++  sP++  ++E+  id ++l+++ +e +e+e+
  MMETSP1061-20121228|7424_1 646 NTRQLDRTQQLITSTDVVQEATEASPHVTENNENGMIDSTKLDHTNQEAQENEK 699
                 456667777777778888888999**********************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       278  (0.0677718); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 2848.76
//
Query:       MMETSP1061-20121228|7430_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-16   55.9  30.5    6.1e-05   20.5   2.4    6.4  6  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   1.3   1.6e-07   0.00065       1      25 [.       6      29 ..       6      30 .. 0.85
   2 !    3.0   0.0    0.0047        19      13      25 ..      46      58 ..      41      59 .. 0.80
   3 !   19.5   0.1   3.2e-08   0.00013       1      25 [.      60      83 ..      60      84 .. 0.97
   4 !   10.2   0.3   2.6e-05      0.11       6      21 ..      89     103 ..      86     108 .. 0.86
   5 !   20.5   2.4   1.5e-08   6.1e-05      12      25 ..     118     131 ..     109     131 .. 0.92
   6 ?    1.2   0.2     0.018        72       1      24 [.     133     155 ..     133     157 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.6e-07
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                MF +   +++ ++ n+++s+VT M+
  MMETSP1061-20121228|7430_1  6 MFKNAVDFNQ-PINNWNVSKVTSMT 29
                7777777778.9************8 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0047
   TIGR02167 13 lSnfdTsnVTnMs 25
                l+ +d++nV  M 
  MMETSP1061-20121228|7430_1 46 LEYWDVANVKSMG 58
                666******9886 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 3.2e-08
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                MF gC ++++ +l+ + +s+VT M+
  MMETSP1061-20121228|7430_1 60 MFTGCNHFNQ-PLEAWIVSSVTSMT 83
                **********.*************8 PP

  == domain 4    score: 10.2 bits;  conditional E-value: 2.6e-05
   TIGR02167   6 ssLtsLDlSnfdTsnV 21 
                 +s +s DlS +d++nV
  MMETSP1061-20121228|7430_1  89 TSMNS-DLSAWDVANV 103
                 78999.*********9 PP

  == domain 5    score: 20.5 bits;  conditional E-value: 1.5e-08
   TIGR02167  12 DlSnfdTsnVTnMs 25 
                 D+S++d+s+VTnM+
  MMETSP1061-20121228|7430_1 118 DISSWDVSSVTNMT 131
                 9************6 PP

  == domain 6    score: 1.2 bits;  conditional E-value: 0.018
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnM 24 
                 MF+  s +++ +l+ +++ ++  M
  MMETSP1061-20121228|7430_1 133 MFYFASLFNQ-NLDLWQVNSTQKM 155
                 9*****9999.9998888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1141.99
//
Query:       MMETSP1061-20121228|7427_1  [L=1135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-104  347.4   0.0    3.6e-71  237.8   0.0    3.4  3  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    1.2e-80  269.2   0.0    1.8e-80  268.6   0.0    1.3  1  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    4.5e-74  247.7   0.0    4.1e-73  244.5   0.0    2.0  1  TIGR01746 Thioester-redct: thioester reductase domain
      2e-44  149.8   0.0    5.2e-44  148.5   0.0    1.6  1  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    1.1e-27   94.5   0.0    1.1e-19   68.1   0.0    2.9  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    2.2e-19   67.4   0.1    7.5e-18   62.3   0.1    2.6  1  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    8.2e-17   58.5   0.0    1.3e-08   31.4   0.0    4.3  4  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    1.7e-16   57.5   0.0    1.2e-11   41.4   0.0    3.0  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.7e-16   57.5   0.2    1.3e-12   44.7   0.1    3.5  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    1.8e-15   54.6   0.0    3.5e-08   30.5   0.0    3.0  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    5.8e-15   52.8   0.0    5.9e-13   46.2   0.0    2.9  1  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    2.3e-08   30.9   0.0    4.4e-08   30.0   0.0    1.4  1  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase
    9.1e-06   22.6   0.0      0.034   10.8   0.0    2.6  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    1.4e-05   21.6   0.0     0.0014   15.1   0.0    2.6  2  TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase
    3.6e-05   20.4   0.0    0.00074   16.1   0.0    2.4  2  TIGR02316 propion_prpE: propionate--CoA ligase
      9e-05   18.6   0.0       0.02   10.8   0.0    2.2  2  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
     0.0037   14.2   0.0        1.3    5.9   0.0    3.1  2  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
  ------ inclusion threshold ------
      0.013   12.2   0.2       0.12    9.0   0.1    2.4  1  TIGR01179 galE: UDP-glucose 4-epimerase
      0.067   10.2   0.0       0.11    9.5   0.0    1.3  1  TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase


Domain annotation for each model (and alignments):
>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.1e-07   2.4e-05     237     330 ..      15     124 ..       7     132 .. 0.92
   2 !   85.7   0.0   1.3e-27   2.9e-25     422     752 ..     195     531 ..     182     540 .. 0.82
   3 !  237.8   0.0   1.7e-73   3.6e-71     785    1237 ..     540    1029 ..     535    1042 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.1e-07
   TIGR03443 237 aiqdifaenaekhPdrtcvvetksal...............apssktreftykqideasnilahyllkt.GikrgdvvmvyasrgvdlvvavlGvlkaGatfsvidPayP 330
                 +++++f e a+  Pd   +v+  s+                +p++ t ++ty+++de ++ la  l++  G+  + vv +   r  +  va+l +lkaG+++  ++  yP
  MMETSP1061-20121228|7427_1  15 CLHELFIEQAKVTPDAIAIVDYGSSYnnsnsnsnsknesfsEPDEGTIQLTYRELDEITDKLAVILIEDyGVGPDAVVGTMFPRCAQYCVAILSILKAGGAYMPLELVYP 124
                 799*****************9888777889999999999988999999******************9755*******************************998888888 PP

  == domain 2    score: 85.7 bits;  conditional E-value: 1.3e-27
   TIGR03443 422 ftsGseGiPkGvkGrhfslayyfpWmakrfglsekdkftmlsGiahdPi..qrdiftPlflGaqllvPtaddigtpGklaeWmakykatvthltPamGqlls.....aqataqiPslhhaffvGdiltkrdclrlqalaenvaivnmyGttetqravsyfeiksrse.dstflkklkdvipaGkGmknvqllvvn.....rndrtklcgv......GevGeiyvragGlaegylglpelnaekfvknwfvekekwkekdkekkkawrefwlgprdrlyrtGdlGrylPdG.nvecsGraddqvkirGfrielGeidthlsrhPlvrenvtl.vrrdkdeektlvsyivpkee 752
                 + sG++G+PkG+   h +  + +     rf + ++     l   a   +    ++f Pl  G++ +      +  p  +++++++ ++t    tP++ ql+       q + ++  l+  ++ G+++ +   +++ +l  nv  +n+y   e    vs  ++k     +++   +++     Gk +  v++ +v+      ++ t+  gv      G  Ge+yv    +  gyl +pe +a++fvkn f + e    +dk+ + +          rlyrtGdlGr lPd  + e  Gr d  vkirG+ + lG ++t l++hP++   v l v  +   +k lv+y+vp  +
  MMETSP1061-20121228|7427_1 195 MSSGTTGVPKGICQTHRAAVHSYLDRIVRFPFHSNPETGELEDRAGAGVffVWELFRPLIKGTTTVCIPDHVLFDPDAVTKFVRDRGVTRILWTPSLLQLIMdtltpEQVQDRLGGLRYLWLCGEVVSRHLAVSFTKLLPNVEFMNLYSISECH-DVSIGDLKRELGpSENSDGEVRKYATCGKAIPGVKFYIVDleqndDHEATTKTGVmqlvpeGATGEVYVGGPVVGRGYLHMPEKTADRFVKNPFLDLE---GEDKNIHAP----------RLYRTGDLGRVLPDSkELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVVLaVGSEGSRDKKLVAYVVPA-S 531
                 579*************99888666666799999999999999988887722579********986655566788999*******************9998762222257888999*************************************85.7999999876541444456788889999999999999996321112344555565455555889*****************************99854...445554444..........9************97369*********************************999986789999***********8.3 PP

  == domain 3    score: 237.8 bits;  conditional E-value: 1.7e-73
   TIGR03443  785 dikeylkkklasyavPtvivplkklPln..PnGkvdkPalpfPdta.qlaavakk..........esaeaeeeeltetekeirdlWlevlPnkpatiskddsffdlGGhsilatrlifelrkklvvevplgvifkkPtikafakevdrlkkaelelaeekesekeeekevleadyakdakklves.lpksyaskkelaaeeevtvfltGatGflGsfilrdlltrrkssslkvvahvrakseeaglerlrkagkaygiWdeewvs...................kievvlGdlskekfGlseekwkklaeevdviihnGalvhWvyPysklrdanvigtinvlklaaeg.....kaklfsfvsstsa..ldteyyvelsdelveeGka..GisesddlegsskglttGyGqskWvaeylireagkrGlrgsivrpGyvvGdsktgatntddfllrllkgsiqlgliP..dientvnmvPvdhvarvvvaaalnppke 1237
                   ++++lk++++ ya+P+ + +++ lP+     Gk+d+ +lp  +ta +l a + +          ++a++     ++tek i ++W+++l  +++++s  dsff++GGhs+lat+++  + +k+  ++++ +++++Pti+++++++ +  +a+  l++   ++ + ++e+++ d +    kl+++  + s    +++a ++++ vfltGatG+lGs+il++ll+     ++  v++ ra++++++ +rl ++   y +   +  s                   ++ +v Gdlsk+ +G++e+++k+la e+d iih Ga v  +  ys l+++nv+gt ++l+la+++     k k  +++s+  +  +d+++y+++++   e+ ++   ++e+ dl   s  l++Gy  +kWvae++   a +rGl  s++rpG + G++ tg++n dd+   ll g ++ g  P  d + ++ + Pvd  a+ v+  a n+p++
  MMETSP1061-20121228|7427_1  540 SVRQFLKEHVPPYAIPSTFCVIDALPVAasAAGKLDRKKLPSHETArRLRAFSYDdydddladesAKATSRMGPENDTEKGIVEIWSQLLDISADELSVVDSFFEVGGHSLLATKMVKMMNEKFSGDLSIITVMESPTIRDISNAILNEGSADAGLSA---NAIDMQAEAMSLDPS-IFPKLTANgDAMSRIRIESSALTNPRVVFLTGATGYLGSHILSELLQIP---EITTVCLARAQDDASAKQRLLSTMDKYQLRTSTIESiqsssdaadadaaalvmdsRLMAVAGDLSKPLLGMDEKQFKSLALEIDSIIHCGAEVNLIKSYSSLKESNVLGTQEILRLATTNgfvntKVKPVHYISTNGIfpVDAKAYFSEAELEQEQERTtvRLKEDVDLDRFSPFLSEGYAMTKWVAERMCALAESRGLPISVLRPGNMAGSTITGVSNPDDLNYLLLDGILKAGCAPlvDTNYALDLTPVDFAAKAVAQLAANSPQA 1029
                  69************************972257*********9988725777776689999876443344444556899********************************************************************888888844433...333333333233222.23344443222333334467888999********************998...89999**************99888877654322211111222233344445566799***********************************************************9864355459999*****9886448999***99986655555522678999999999****************************************************************9555677899*********998888777754 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.6   0.0   8.2e-83   1.8e-80       1     409 []      65     510 ..      65     510 .. 0.86

  Alignments for each domain:
  == domain 1    score: 268.6 bits;  conditional E-value: 8.2e-83
   TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeelaeelaevaleailleeleekaaedasaeeaaeak......skpddlayviyTSGStGkPKgVlvehrslvn.llaslar.ryelseedrvlqfsslaFDlsveeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeea.see.lk...slrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeesee.e......pvpiGrplanvrlyvldea.............lrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksege.......rlYrTGDlvrlradG.eleflGRaDdqvKirGfRielgEieaalaelpgveeavv 409
                 tYreLde +++lA  L+e  gv+p+ +V+ +++r+++  vail +lkaG+ay+pl+  yP+  l++ +++++akl++t e++a++ ++    ++l ++      eda+a e+++ +      +k+d+la+ +  SG+tG PKg+  +hr++v+ +l+  +r  +++++e   l   + a  ++v+e+f +l+ G t+v++p++    +++ +++++++r vt +  tpsll+l++++  +e+ ++    lr+++l+Ge+++++l+ ++ +  ++v+++nlY ++E++ v+    ++++  ++e +       ++ G+++++v++y++d +             +++vp+g++GE y+gG+ v rGYl++pe+ta+rFv++pf + ege       rlYrTGDl+r+++d  ele+lGR D+ vKirG+ + lg +e+ala++p+ ++avv
  MMETSP1061-20121228|7427_1  65 TYRELDEITDKLAVILIEDYGVGPDAVVGTMFPRCAQYCVAILSILKAGGAYMPLELVYPKFLLERAVNETNAKLVMTVEAYANRIDDPSMVMALGSK--APFLEDAKAGERPSYPpasyvaPKADHLAFAVMSSGTTGVPKGICQTHRAAVHsYLDRIVRfPFHSNPETGELEDRAGAGVFFVWELFRPLIKGTTTVCIPDHVLF-DPDAVTKFVRDRGVTRILWTPSLLQLIMDTLtPEQvQDrlgGLRYLWLCGEVVSRHLAVSFTKLLPNVEFMNLYSISECHDVSIGD-LKRELGPSEnSdgevrkYATCGKAIPGVKFYIVDLEqnddheattktgvMQLVPEGATGEVYVGGPVVGRGYLHMPEKTADRFVKNPFLDLEGEdknihapRLYRTGDLGRVLPDSkELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVV 510
                 9*****************999*****************************************************************988765555443..333333334443333344578899*************************99972555666655555889999999999999*********************9997.8889999999999***************99984443446779*************************************9988763.33332222212345666889*************8543344566666777899*************************************999888999999************99647************************************98 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.5   0.0   1.9e-75   4.1e-73       2     361 ..     740    1129 ..     739    1133 .. 0.87

  Alignments for each domain:
  == domain 1    score: 244.5 bits;  conditional E-value: 1.9e-75
   TIGR01746    2 vlLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLrealr.................syrleeeklaa.erievvaGdlseprlGLseaewerLaeevdtivhngAlVnfvqpYeeLraaNVegtvevlrla.....asgkakpliyvStlsvlaaielsak...............vevddatetkkpglatGYaqSKwvaEllvreasdrglpvtivRpGrilgdsetGainssdillrlvkaclelglvPdlee.lteellpvdfvaraivalasqlaaeaggavfhvvnpkealsldefleilke.agyelk.l..vsfdewlqrleesdsekgdkerepllallralldnrsteepelatselevksvaealekegsrepsitaellkey 361 
                  v+LTGAtG+LG ++l eLl+   e++ +Cl Ra+++++a++RL ++++                 +++ + ++l++ +r+ +vaGdls+p lG++e++++ La e+d i+h gA+Vn +++Y++L++ NV gt+e+lrla     +++k kp++y+St    +   ++                 +++d + ++ +p l +GYa +KwvaE++++ a++rglp++++RpG+ +g+  tG+ n++d+   l++++l++g +P ++     +l+pvdf+a+a+++la++  + a+g+ +h+ +p+++++l  ++e+l++  g e + +  v+ +ew +r+ +s ++      ++ +  ++++        +++   el++ + ++ale++ +++p ++++ll+++
  MMETSP1061-20121228|7427_1  740 VFLTGATGYLGSHILSELLQI-PEITTVCLARAQDDASAKQRLLSTMDkyqlrtstiesiqsssdAADADAAALVMdSRLMAVAGDLSKPLLGMDEKQFKSLALEIDSIIHCGAEVNLIKSYSSLKESNVLGTQEILRLAttngfVNTKVKPVHYISTNGIFPVDAKAYFseaeleqeqerttvrLKEDVDLDRFSPFLSEGYAMTKWVAERMCALAESRGLPISVLRPGNMAGSTITGVSNPDDLNYLLLDGILKAGCAPLVDTnYALDLTPVDFAAKAVAQLAANSPQAAIGQRLHLQSPHKPVPLGTVVEWLNSkRGGESQpIepVTRAEWMERISASNEKL-----SSGWLSFEKYF-------EAYTWLELDSDNLQQALEGSSIQCPDFDNALLEKW 1129
                  9********************.7*************************888888888887776665666677889999**************************************************************433334689*********77665322222235678999*****8878888889999999***************************************************************99854568**************999866569*********88***********997776655532488899999999988854.....34454455552.......3455689*************************998 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.0   2.4e-46   5.2e-44      22     500 ..      60     581 ..      46     585 .. 0.82

  Alignments for each domain:
  == domain 1    score: 148.5 bits;  conditional E-value: 2.4e-46
   TIGR01734  22 egqeltykeLkeesdklaaalqerlleekePiivfGkqef...emlvaflgsiksGhayiPvDtsipleriekikeaaepelvievaelsielvete.vi....tlealeeieeekaeavelekav..keddnyyiiytsGstGkPkGv.qishdnLvsftnWiled.fklseekqllnqapysfDLsvmdlyPsLasGGtLvaldkeitnnfkeLfeelkklglnvWvstPsfvdlcl..ldpsfneeklpklteflfcGevLtkktakkLlerfPkakiyntyGPteat.vavtsvkitkei.....ld..eyerlPiGfakpdvnlfivdeeGek.............lsegekGeivivGdsvskGylnnpekteeaffea.........egkra...yrtGDagti.eddgllfyqGrlDfqiklnGyrieLedieanlkkskyikeavvvPkynkdekveaLiaavvake.edfekelkltkaikkeLkkilmeymiPrkfiykdklplt..anGkiDrkalae 500
                  + +lty+eL e +dkla  l e       P  v G + +   +  va+l+  k+G ay+P+++  p+  +e+  + ++++lv++v++ ++ + + + v+    ++  le++++ + +++   + v  k d   + +  sG+tG PkG+ q  ++ + s+ + i++  f+++ e+  l+    +  + v +l+  L  G t v+++ ++  ++  + + +   g+   + tPs ++l +  l p+  +++l+ l    +cGev++++ a  + +  P+ + +n y   e   v++  +k  +e+      d    +    G a p+v+ +ivd e +              ++eg  Ge+ + G+ v +Gyl+ pekt++ f ++         ++++a   yrtGD g +  d   l + Gr Df +k++Gy + L  +e+ l k   + +avv+ +  +  + ++L+a+vv+ + ed  +    ++ +++ Lk+ ++ y iP+ f   d lp++  a Gk+Drk+l +
  MMETSP1061-20121228|7427_1  60 GTIQLTYRELDEITDKLAVILIEDYG--VGPDAVVGTMFPrcaQYCVAILSILKAGGAYMPLELVYPKFLLERAVNETNAKLVMTVEAYANRIDDPSmVMalgsKAPFLEDAKAGERPSYPPASYVapKADHLAFAVMSSGTTGVPKGIcQTHRAAVHSYLDRIVRFpFHSNPETGELEDRAGAGVFFVWELFRPLIKGTTTVCIPDHVLFDPDAVTKFVRDRGVTRILWTPSLLQLIMdtLTPEQVQDRLGGLRYLWLCGEVVSRHLAVSFTKLLPNVEFMNLYSISECHdVSIGDLK--RELgpsenSDgeVRKYATCGKAIPGVKFYIVDLEQNDdheattktgvmqlVPEGATGEVYVGGPVVGRGYLHMPEKTADRFVKNpfldlegedKNIHAprlYRTGDLGRVlPDSKELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVVLAVGSEGSRDKKLVAYVVPASwEDPPS----ASSVRQFLKEHVPPYAIPSTFCVIDALPVAasAAGKLDRKKLPS 581
                 56699**************9999743..347777888876222457899**************************************999888777632212224567899999999999888888335677789*************8578889999******998799999999999999999999************************************************9877799**********************************************8436777665..4441111122102344678************955321112222333334489**************************99975322223221133333444******98615667899*******************************************************98454444....4567999999******************972257*******976 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.7e-08   5.7e-06       2     189 ..      16     214 ..      15     223 .. 0.83
   2 !   68.1   0.0   5.3e-22   1.1e-19     236     514 ..     265     579 ..     246     582 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.7e-08
   TIGR03098   2 lheLiaasaerepdatalklkdr........................tltyaaLseevkalasgl.kalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledalakchdlrtlilvdepekasekkagaevlsweklkaleeaaakvdvidddlaailYtsGstGrPkgvvlshrnlv 189
                 lheL  ++a+ +pda+a+++ +                         +lty +L+e   +la  l +  g+   + v+++ ++  + ++a+++  +agg+++p+  +  +  ++  ++++n+kl++t ++  + ++d          ++ ++ ++   e+    e  s+  +         v    d la  +  sG tG Pkg+  +hr  v
  MMETSP1061-20121228|7427_1  16 LHELFIEQAKVTPDAIAIVDYGSsynnsnsnsnsknesfsepdegtiQLTYRELDEITDKLAVILiEDYGVGPDAVVGTMFPRCAQYCVAILSILKAGGAYMPLELVYPKFLLERAVNETNAKLVMTVEAYANRIDD-------PSMVMALGSKAPFLEDAKAGERPSYPPASY-------VAPKADHLAFAVMSSGTTGVPKGICQTHRAAV 214
                 78999999999999999988877788889999999999999999999**************98652789*******************************************************9998876554443.......346788888887777754444444433333.......3333578999999***************9866 PP

  == domain 2    score: 68.1 bits;  conditional E-value: 5.3e-22
   TIGR03098 236 dyllpkD.vlkavekekitglaavPPlWlqLakldwpeeaaes....lRyltnsGGalpkavlarlRkllpeaklylmYGLteafRsty......LdPeevd....rrPdsiGkaipnaevlvl...redGseca..........peeeGelvhrGalvakGYWndpektaerfrplpkrqse...lkltelavf.sGDlvrrDee.GflyfvgRrdemiktsGyRvsPteveevllatglvaeavvlgvpdpel.Gqaivlvvv.esdkeeldkkellkelraelPaymvPakielrealpr..nanGkiDrkal 514
                 + l+  D v k v+ +++t +   P l lqL  + + +e+ +     lRyl   G ++++ + + + kllp+ +   +Y + e    +       L P e      r+    Gkaip +   ++   ++d +e++           + +Ge+   G++v +GY + pekta rf ++p  + e    +++    +  GDl+r   +   l ++gR d m+k  Gy v    ve +l + ++++ avvl+v ++ +  +++v+ vv +s ++  +  ++++ l++++P y +P +  + +alp   +a Gk+Drk l
  MMETSP1061-20121228|7427_1 265 HVLFDPDaVTKFVRDRGVTRILWTPSL-LQLIMDTLTPEQVQDrlggLRYLWLCGEVVSRHLAVSFTKLLPNVEFMNLYSISECHDVSIgdlkreLGPSENSdgevRKYATCGKAIPGVKFYIVdleQNDDHEATtktgvmqlvpEGATGEVYVGGPVVGRGYLHMPEKTADRFVKNPFLDLEgedKNIHAPRLYrTGDLGRVLPDsKELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVVLAVGSEGSrDKKLVAYVVpASWEDPPSASSVRQFLKEHVPPYAIPSTFCVIDALPVaaSAAGKLDRKKL 579
                 334444515566777789999999888.56666666544444223339************************************987753433336676543255578899********99887433223333321122222221356899999***********************86543300133343344438***997554157**************************************9998765514567766664778899999*************************99822467*****987 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.1   3.5e-20   7.5e-18      29     505 ..      62     579 ..      44     582 .. 0.71

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 3.5e-20
   TIGR02262  29 sslsygeleaevrrvaaalr.rlGvkreervllvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvseellpvlkevlaklpdleklvvvgakpagekqlaellateseqekaa...atkaddpafwlyssGstGapkGvvhvhsnlrv.taelyarkvlglreddvvf...saaklffayGlGnalifplsvGatavlmaerp..tpdavfdrlrrvkptifygvptlyaamlad..pelkaedekrlrlctsaGealpeevGkrwkarf.GvdildGvGstellhifl..........snlpddv.kyGtsGkpvpGyrlrlvd....dgg.........edvadgevGellvsgpssaagywnnreksratfe........Ge........wtrsGdkyvr.nddGsytyaGrtddllkvsGiyvspfevesaliaheavleaavvgaededg.likpkafvvlrsgadidealeeelkehvkdklapykyprwievvddlpkt..atGkiqrfkl 505
                  +l+y el++ + ++a +l    Gv ++  v  ++     + ++ l  ++aG   ++l+ +  +   +  +++++        +l   +++ + +++d   +++ g+k +  +   +  a e +   +a   a kad+ af + ssG+tG+pkG+  +h    +   +   r  ++   +   +   + a +ff +     l+ pl  G+t+v  ++     pdav + +r    t +   p+l   ++    pe  +++   lr     Ge +  ++  ++ + +  v+ ++    +e   + +           n  ++v ky t+Gk +pG +  +vd    d           + v +g +Ge++v gp  + gy   +ek+++ f+        Ge          r+Gd   +  d       Gr+d ++k+ G  v    ve+al +h+++  a v+++  e     k  a+vv++s +d    +  ++++++k+++ py  p    v+d lp +  a+Gk+ r kl
  MMETSP1061-20121228|7427_1  62 IQLTYRELDEITDKLAVILIeDYGVGPDAVVGTMFPRCAQYCVAILSILKAGGAYMPLELVYPKFLLERAVNETN-------AKLVMTVEAYANRIDDPSMVMALGSKAPFLE---DAKAGERPSYPPAsyvAPKADHLAFAVMSSGTTGVPKGICQTHRAAVHsYLDRIVRFPFHSNPETGELedrAGAGVFFVWE----LFRPLIKGTTTVCIPDHVlfDPDAVTKFVRDRGVTRILWTPSLLQLIMDTltPEQVQDRLGGLRYLWLCGEVVSRHLAVSFTKLLpNVEFMNLYSISECHDVSIgdlkrelgpsENSDGEVrKYATCGKAIPGVKFYIVDleqnDDHeattktgvmQLVPEGATGEVYVGGPVVGRGYLHMPEKTADRFVknpfldleGEdknihaprLYRTGDLGRVlPDSKELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVVLAVGSEGSrDKKLVAYVVPASWEDPP--SASSVRQFLKEHVPPYAIPSTFCVIDALPVAasAAGKLDRKKL 579
                 5799***********99987689****9999999999***************99999987765444444444444.......4555566777888888888888887543333...33344444444432227899*********************99765541467777777776654444322256899**996....6889999********98633699**99999988777777788876554431133333445568999999999999999999876634666665555555555441111111222466677756**********7665554421322211111112234668999***********************99622222222432222222235788865441555667899****************************98888877766544145678*******99555..57899************************862257*****998 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.44        96      23      54 ..      14      45 ..       8      60 .. 0.78
   2 !   19.4   0.0   2.6e-07   5.5e-05      45     209 ..      60     215 ..      49     223 .. 0.80
   3 ?    0.8   0.0      0.11        24     261     322 ..     270     333 ..     255     347 .. 0.87
   4 !   31.4   0.0   5.9e-11   1.3e-08     371     525 ..     405     579 ..     391     580 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.44
   TIGR02275 23 ktltdileeqaakkpdaiaiicgerkfsyrel 54
                  l +++ eqa+ +pdaiai++    ++  + 
  MMETSP1061-20121228|7427_1 14 LCLHELFIEQAKVTPDAIAIVDYGSSYNNSNS 45
                56889999*************98776655544 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 2.6e-07
   TIGR02275  45 gerkfsyrelderadnlaasl.tklGikkgdtavvqlpniaefyivffallklGvaPvlalfshrkselkayaeqieaalliidrahs.lfdedalarelkaklstlkvvivagkeveeelksaleslaeevkleetkadevaffqlsGGstGtpkliPrthddyay 209
                 g  +++yrelde +d+la  l +  G++    +   +p  a++ ++++++lk+G a +     + k  l+  +++++a+l+++ +a++  +d+ +++  l +k + l+    ag++            +   ++ + kad++af  +s G+tG+pk i +th   ++
  MMETSP1061-20121228|7427_1  60 GTIQLTYRELDEITDKLAVILiEDYGVGPDAVVGTMFPRCAQYCVAILSILKAGGAYMPLELVYPKFLLERAVNETNAKLVMTVEAYAnRIDDPSMVMALGSKAPFLEDAK-AGER----------PSYPPASYVAPKADHLAFAVMSSGTTGVPKGICQTHRAAVH 215
                 56799*************9872567999888888899*****************887766667777888888899999999887776516888899999999998876543.2212..........2334466777899***********************86555 PP

  == domain 3    score: 0.8 bits;  conditional E-value: 0.11
   TIGR02275 261 pteafpliekhkvtvtalvPpavalwldaae..ksradlsslkllqvGGaklsealarrvpkvl 322
                 p+ + ++++ + vt +   P++ +l +d+++  + ++ l  l+ l + G  +s +la    k+l
  MMETSP1061-20121228|7427_1 270 PDAVTKFVRDRGVTRILWTPSLLQLIMDTLTpeQVQDRLGGLRYLWLCGEVVSRHLAVSFTKLL 333
                 67777899999*****************9976577899***************99998877765 PP

  == domain 4    score: 31.4 bits;  conditional E-value: 5.9e-11
   TIGR02275 371 epvaeGeaGrlltrGPytirGyykaeehnakafdaeGf...............yitGdlvkltkeG.yivveGrakdqinrGGekiaaeeienlllkhpavidaalvsledellG.ekscafivvkded..lkavqlrrflreaGlaeyklPdrvelidslPlt..avGkidkkal 525
                 + v+eG +G + + GP   rGy + +e  a  f ++ f               y+tGdl ++ ++   + + Gr    +   G  +    +e  l khp++  a ++++  e    +k  a++v++  +    a  +r+fl+e+ +  y +P  + +id+lP++  a Gk+d+k+l
  MMETSP1061-20121228|7427_1 405 QLVPEGATGEVYVGGPVVGRGYLHMPEKTADRFVKNPFldlegedknihaprlYRTGDLGRVLPDSkELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVVLAVGSEGSRdKKLVAYVVPASWEdpPSASSVRQFLKEH-VPPYAIPSTFCVIDALPVAasAAGKLDRKKL 579
                 56899***********************99999776554444445555555559******9988862699**********9****************************88866515668999987533348999******986.99***************862268*****987 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   4.5e-05    0.0097      83     170 ..      57     145 ..      40     155 .. 0.84
   2 !   41.4   0.0   5.8e-14   1.2e-11     237     599 ..     186     577 ..     147     587 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.5e-05
   TIGR02188  83 egedsrkltYaellrevcrlanvlke.lGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitade 170
                 ++e + +ltY+el + + +la +l e +Gv  +  v   +p   +  +a+l++ + G  ++ +   +    l+  +++++aklv+t + 
  MMETSP1061-20121228|7427_1  57 PDEGTIQLTYRELDEITDKLAVILIEdYGVGPDAVVGTMFPRCAQYCVAILSILKAGGAYMPLELVYPKFLLERAVNETNAKLVMTVEA 145
                 3445679**************998766*****************************99987665555555677779999******9876 PP

  == domain 2    score: 41.4 bits;  conditional E-value: 5.8e-14
   TIGR02188 237 dsedplfiLYtsGstGkPkGvlhtt.gGylllaaltvkyvfdikde.difwCtaDvGWvtGhsYivygPLanGattllfegvptypdasrfweviekykvtifYtaPtaiRalmklgeelvkkhdlsslrvlgsvGepinpeaweWyyevvGkekcpivdtwWqtetGgilitpl.....pgv...atelkpgsatlPlfGieaevvd.eegkeveeeeeggvLvik..kpw.......Psmlrtiy....gdeerfvetYfkklkg.........lyftGDgarrdkd.GyiwilGRvDdvinvsGhrlgtaeiesalvsheavaeaavvgvpde.ikgeaivafvvlkegveedeeelekelkklvrkeigpiakpdkilvveelPktRs..GkimRR 599
                 +++++ f +  sG+tG PkG+  t  +    ++   v++ f  ++e       a  G      + ++ PL++G tt+         d++ +++ +   +vt    +P +++++m + +    +  l  lr l   Ge +       +++ +   ++++++ +   e   + i  l     p+        k +++ + ++G++  +vd e+ ++ e+++++gv+ +    +        P + r+      +  +rfv+  f +l+g         ly tGD  r   d   + ilGR D ++++ G+ +    +e+al +h++++ a v++v  e  + + +va+vv  + +++ +   ++++++ +++++ p+a p++  v+++lP   s  Gk+ R+
  MMETSP1061-20121228|7427_1 186 KADHLAFAVMSSGTTGVPKGICQTHrAAVHSYLDRIVRFPFHSNPEtGELEDRAGAG--VFFVWELFRPLIKGTTTVCIPDHV-LFDPDAVTKFVRDRGVTRILWTPSLLQLIMDTLTPEQVQDRLGGLRYLWLCGEVVSRHLAVSFTKLLP--NVEFMNLYSISECHDVSIGDLkrelgPSEnsdGEVRKYATCGKAIPGVKFYIVDlEQNDDHEATTKTGVMQLVpeGATgevyvggPVVGRGYLhmpeKTADRFVKNPFLDLEGedknihaprLYRTGDLGRVLPDsKELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVVLAVGSEgSRDKKLVAYVVPASWEDPPS---ASSVRQFLKEHVPPYAIPSTFCVIDALPVAASaaGKLDRK 577
                 6899*****************987624445556666666666664313444455555..4467889**********9865544.44788999**********************988777777999**************999888888886..5778888999998888887762222222222223468899**************76666777666666654321111111112225555665512224456777777777776888999999******999877735799************************************999766267889******988777666...6999************************876644777665 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0031      0.67      46     127 ..      63     145 ..      58     151 .. 0.91
   2 !   44.7   0.1   6.1e-15   1.3e-12     181     540 ..     177     579 ..     155     580 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0031
   TIGR03205  46 aitytelealaetaaaallr.agygkdasvalylgntpdhpinffgalkagarvvhlspldgeralshklsdsgarllitsdl 127
                 ++ty el+ ++++ a  l+   g+g da v+ ++    ++ + ++  lkag   + l  +  +  l   + ++ a+l++t + 
  MMETSP1061-20121228|7427_1  63 QLTYRELDEITDKLAVILIEdYGVGPDAVVGTMFPRCAQYCVAILSILKAGGAYMPLELVYPKFLLERAVNETNAKLVMTVEA 145
                 789**********999998636********************************99999999999999999999999999875 PP

  == domain 2    score: 44.7 bits;  conditional E-value: 6.1e-15
   TIGR03205 181 akpaewpavkaddvallqytggttglpkgamlthgn.ltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfdvaavlrdieekratvfpgvptmwialan..dpslekrdlssla...tigsg.gaplpvevaklferkvglklksgwgmtet..cspgtghplegp....d....kpgsiglmlpgieldvvsl...dd...pk.....kvlppgevgelrirgpnvtrgywnraeesaeafvgdrfl................tgdigyvdrdgyff.lvdrkkdmiisggfnvypqmieqaiyelpavqevivigipdq.yrgeaakafvklregakpfsldelraflagklgkhelpvavelvdelprt..svgklsrhel 540
                  +pa++ a kad +a+   + gttg+pkg   th   + s +     +  +s  e+g++e       +f ++ l   l++       i  h  fd +av + + ++  t +   p++   + +   p+  +  l  l    ++g      l v  +kl+     ++l s   ++e   +s g  +   gp    d    k  + g  +pg+++ +v l   dd   ++     + +p g  ge+ + gp v rgy   +e++a+ fv++ fl                tgd+g v  d   + ++ r   m+   g+ v    +e a+ ++p +   +v+ +  +  r +   a+v   +   p s  ++r+fl+ ++  + +p++  ++d lp +  + gkl r++l
  MMETSP1061-20121228|7427_1 177 YPPASYVAPKADHLAFAVMSSGTTGVPKGICQTHRAaVHSYLDRIVRFPFHSNPETGELEDRA-GAGVFFVWELFRPLIKGTT-TVCIPDHVLFDPDAVTKFVRDRGVTRILWTPSLLQLIMDtlTPEQVQDRLGGLRylwLCGEVvSRHLAVSFTKLLPNVEFMNLYS---ISEChdVSIGDLKRELGPsensDgevrKYATCGKAIPGVKFYIVDLeqnDDheaTTktgvmQLVPEGATGEVYVGGPVVGRGYLHMPEKTADRFVKNPFLdlegedknihaprlyrTGDLGRVLPDSKELeILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVVLAVGSEgSRDKKLVAYVVPASWEDPPSASSVRQFLKEHVPPYAIPSTFCVIDALPVAasAAGKLDRKKL 579
                 4789999999*********************99965145555555567777888889988665.4578999998888877754.457888999**99997777776666666666654433331145444444555550005554313345666666665555555544...44431145554444444411112333367889*********9999843334333222222246899*****************************9888655666655566666668****999888655167788889999****************************76527899999*****************************************7522689**99876 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   2.7e-07   5.9e-05       1     240 [.      65     325 ..      65     331 .. 0.74
   2 !   30.5   0.0   1.6e-10   3.5e-08     328     442 .]     458     579 ..     407     579 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 2.7e-07
   TIGR01923   1 tfaeldkeaarlAkal.kaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslleeke.dlqaisldeleaeae..aeevs..........lsasfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdn..WLlsLPlyHvsGlsilfrallega.tlkivdk..faaeqllesianekvthiSlVptqLkrlleesss.....epeslrkiLLGGsaipapl 240
                 t+ eld+ + +lA  l + ++v    vv+ + +  ++  +++l++l++g   ++l    ++  l+  ++e++ +l++t +   ++  d  ++ +   +a++   a   +               + d++a  ++ Sg+tG pK++ qt+r  ++s      +++f+++ +   L       v  +  lfr l++g+ t+ i+d+  f+ +++ + + +  vt i   p +L+ +++  ++     ++  lr + L G+ ++  l
  MMETSP1061-20121228|7427_1  65 TYRELDEITDKLAVILiEDYGVGPDAVVGTMFPRCAQYCVAILSILKAGGAYMPLELVYPKFLLERAVNETNAKLVMTVEAYANRIdDPSMVMALGSKAPFLedA---KagerpsyppaSYVAPKADHLAFAVMSSGTTGVPKGICQTHRAAVHSYLDRIVRFPFHSNPEtgELEDRAGAGVFFVWELFRPLIKGTtTVCIPDHvlFDPDAVTKFVRDRGVTRILWTPSLLQLIMDTLTPeqvqdRLGGLRYLWLCGEVVSRHL 325
                 7999***9****98642889**********************************************************999997663222222222233332331...234456666543344579*****************************9999999999876540034333222222233478889998625678776557888999999999999999999999998887665322234556777777777777766 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 1.6e-10
   TIGR01923 328 lktgDlgeldge.gfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeDs.efGqvPvayikses...eiskakltaylkeklaKyKvPiafekldelpkeasg..KilRnkl 442
                 ++tgDlg++  +  +l +l+R d ++   G  +    +E++l ++p+++ avv+++  +    ++ vay++  s   + s+  + ++lke++  y +P +f+++d lp  as   K++R+kl
  MMETSP1061-20121228|7427_1 458 YRTGDLGRVLPDsKELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVVLAVGSEgSRDKKLVAYVVPASwedPPSASSVRQFLKEHVPPYAIPSTFCVIDALPVAASAagKLDRKKL 579
                 68*****97555168***********999************************987544145677789998777666999***************************99887556****986 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   2.7e-15   5.9e-13      51     536 ..      61     579 ..      51     581 .. 0.73

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 2.7e-15
   TIGR03208  51 vrrlsyreldalvdriavgl.arlgvgrgdvvslqlpnrwefvalylacarigavlnplmpifrerelsfmlkfadskvlvvpksf.rgfdhaamarelqsklpalrqvvvvdgdgdddfdallvtaerdddpdaaailrgdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgegdvilmaspmah.qtgfmyglmlplvlrasavl...qdiwnaakaaeliretgvtftmastafltdlarav..kesgepvsslkt.flcagapipgalverarealgakivsawgmtengavtvtkpddaeekasvtd.........glplpgvevkvidadg.....ak........lsagevgrllvraasnfggylkrphlna........vdaeg.........wfdtgdlafldaeg.yiriagrskdviirggenipvveieallykhpavaqvaivaypder.lgeracavvvlktgasldfaalveflkaqkvalqyiperlvvrdalp..atpagkiqkfrl 536
                 + +l+yreld ++d++av l +  gvg + vv   +p   ++ +  l+  + g +  pl  ++ +  l   ++ +++k+++  +++  ++d  +m+  l sk+p l +                 + er + p+a+      ++  d ++  + +sgttg pkg+  t  + +   l  + r+ + ++         a     f++ l+ pl+ ++++v      ++++    +++r+ gvt  + + ++l  +  ++  ++  + +  l+  +lc         v  ++ +  ++ +  + ++e+  v++ +++++   +  +d         g+ +pgv+  ++d ++     a+        +++g +g++ v +     gyl+ p+  a         d eg          + tgdl  +  +   + i gr   ++   g  + +  +e+ l khp ++   ++a   e    ++  a+vv+ +      a+ v  + +++v    ip  + v dalp  a+ agk+++ +l
  MMETSP1061-20121228|7427_1  61 TIQLTYRELDEITDKLAVILiEDYGVGPDAVVGTMFPRCAQYCVAILSILKAGGAYMPLELVYPKFLLERAVNETNAKLVMTVEAYaNRIDDPSMVMALGSKAPFLEDA---------------KAGERPSYPPASY----VAPKADHLAFAVMSSGTTGVPKGICQTHRAAVHSYLDRIVRFPFHSNPETGELEDRAGaGVFFVWELFRPLIKGTTTVCipdHVLFDPDAVTKFVRDRGVTRILWTPSLLQLIMDTLtpEQVQDRLGGLRYlWLCGEVVSRHLAVSFTKLLPNVEFMNLYSISECHDVSIGDLKRELGPSENSDgevrkyatcGKAIPGVKFYIVDLEQnddheATtktgvmqlVPEGATGEVYVGGPVVGRGYLHMPEKTAdrfvknpfLDLEGedknihaprLYRTGDLGRVLPDSkELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVVLAVGSEGsRDKKLVAYVVPASWEDPPSASSVRQFLKEHVPPYAIPSTFCVIDALPvaASAAGKLDRKKL 579
                 5789*************9873689******************************************************877665552789**************99642...............34689999**654....47889*******************988776555545555555555444443333333303448899**********99633234799**************9888777776665554215667778889884566555555555666666668999*************988877655554444111111111789*********95431112211223333335678899999999999999*988865432222222223333222222222799****9876665279*****9988866677888999***********999998887775145678999**9998887777666544457899999***********944457899998776 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0     2e-10   4.4e-08     235     385 ..     414     574 ..     370     575 .. 0.72

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2e-10
   TIGR02372 235 evyGatetGGiGlr...eapdedfrlLPdlarsadalssdgaarrldlqdrlr..WddervfvieGrldeilqvgGvnvspghvkdvLeaepaveal...avrldGe...rLkafivvaedadeeeleaeLrataaehLpaparPddlrfgteLPrt..aaGkl 385
                 evy      G G+    e+  + f   P+l  + ++      a+rl     l     d + + i+Gr d ++++ G  v +g+v+  L ++p+   +   av ++G    +L a++v+a+  d+      +r   +eh+p  a P  + +  +LP +  aaGkl
  MMETSP1061-20121228|7427_1 414 EVYVGGPVVGRGYLhmpEKTADRFVKNPFLDLEGEDKNI--HAPRLYRTGDLGrvLPDSKELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAvvlAVGSEGSrdkKLVAYVVPASWEDPP-SASSVRQFLKEHVPPYAIPSTFCVIDALPVAasAAGKL 574
                 566555555555440113344667777777766655554..5666655555531135778899*****************************99875222667777766678899****988888.6789*************************861146776 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00063      0.14       2      35 ..     739     773 ..     738     791 .. 0.76
   2 !   10.8   0.0   0.00016     0.034      54     129 ..     833     912 ..     817     974 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00063
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGe.evrvlvrkts 35 
                  v++tGatG++Gs+++ +ll+  e +  +l+r++ 
  MMETSP1061-20121228|7427_1 739 VVFLTGATGYLGSHILSELLQIPEiTTVCLARAQD 773
                 589*************9999865413445666555 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00016
   TIGR03466  54 deaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravleaAleag.....vervvytssvatlgvkedgkeadet 129
                 de+++k+    ++ ++H  A+ +l  k  ++l ++nv gt+++l+ A+++g     v+ v y s+ +++ v ++   ++ +
  MMETSP1061-20121228|7427_1 833 DEKQFKSLALEIDSIIHCGAEVNLI-KSYSSLKESNVLGTQEILRLATTNGfvntkVKPVHYISTNGIFPVDAKAYFSEAE 912
                 55666666667899*********97.56789****************8765333337888899999998887776555443 PP

>> TIGR02155  PA_CoA_ligase: phenylacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.023       4.9      56     231 ..     168     346 ..     128     361 .. 0.62
   2 !   15.1   0.0   6.3e-06    0.0014     291     360 ..     458     522 ..     451     560 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.023
   TIGR02155  56 taksdlrdnypfdll.avprekvvrvhassGttGkptvvaytqk.dldtwsevvarslraaGGrkgdllhnayGyGlft.GGlGvhyGaeklGatvvpisGG...qtekqvqliqdfkpdiiavtpsyilalleelkrlgidpedislkvailGaepwteamrkelearl.gikaldiyGlse 231
                  ak   r  yp   + a + ++++    ssGttG p  ++ t++  ++++ + + r    +   +g+l   a G G+f    l         G+t+v i      + +   ++++d     i  tps +  ++++l   +++ +   l++  l  e  ++++     + l +++ +++y +se
  MMETSP1061-20121228|7427_1 168 DAKAGERPSYPPASYvAPKADHLAFAVMSSGTTGVPKGICQTHRaAVHSYLDRIVRFPFHSNPETGELEDRA-GAGVFFvWELF---RPLIKGTTTVCIPDHvlfDPDAVTKFVRDRGVTRILWTPSLLQLIMDTLTPEQVQDRLGGLRYLWLCGEVVSRHLAVSFTKLLpNVEFMNLYSISE 346
                 456667778876554055567888888899999999888877652466676666666666666666554444.44444302222...222224444444333111334445566666666677777777777777777777777777777777777777777666666554667777777776 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 6.3e-06
   TIGR02155 291 yrtrdltrllpgtartmrrmdkikGrsddllilrGvnvfptqleevllkldklsphyqleltreGaldel 360
                 yrt+dl r+lp++        +i Gr d ++ +rG  v    +e  l k +kls+   l +  eG  d+ 
  MMETSP1061-20121228|7427_1 458 YRTGDLGRVLPDSK-----ELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVVLAVGSEGSRDKK 522
                 9**********864.....34799*****************************************99975 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.3   2.9e+02      80     133 ..      60     114 ..      54     145 .. 0.81
   2 !   16.1   0.0   3.4e-06   0.00074     237     598 ..     193     579 ..     185     588 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.3
   TIGR02316  80 eertltyrqlhrevnalasa.lralgvrrgdrvliylpmiaeaalallacariga 133
                  + +ltyr+l +  ++la + ++  gv+    v   +p  a+  +a+l+  + g 
  MMETSP1061-20121228|7427_1  60 GTIQLTYRELDEITDKLAVIlIEDYGVGPDAVVGTMFPRCAQYCVAILSILKAGG 114
                 466899****999999998725789999888888899999999999999877765 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 3.4e-06
   TIGR02316 237 ilytsgttgkpkgvqrdvggyavalaasmdaifgakag.dvlfsasdvgwvvghsyivyapllaglatvlyeglptrpdggvwwsivekyrvsvmfsaptairvlkkqdaallrkhdlsslevlflagepldeptarwisdalgkpvidn.ywqtetg.wpvlaiargl......ddkpvklgspglpvygyrldvld.......eatged.....vgpnekgllvvaapl.ppgclstvwgddarflktyfsafk...r.....llyssldwg.irdedgytfilgrtddvinvaghrlgtreieesvsshaavaevavvgvkdel.kgqvavafailkeadsvedaddahalekelmalvesqlgavarparvyvvaalpktrs..gkllrrai 598
                  + +sgttg pkg+ +     av   +   + f  ++  ++       g  v   + ++ pl+ g +tv      +  d+    + v   +v++++ +p+ ++++    + +  +  l  l++l+l+ge +    a   ++ l +    n y  +e+    +  ++r l      d +  k+ + g  ++g ++ ++d       eat +      v  +  g + v +p+   g l+   +   rf+k  f  ++   +      ly + d g +  ++    ilgr d ++++ g+ +    +e +++ h+ ++ + v+ v  e  + +  va++++    s ed+ +a ++ + l+    + +  +a p+   v++alp + s  gkl r+ +
  MMETSP1061-20121228|7427_1 193 AVMSSGTTGVPKGICQT-HRAAVHSYLDRIVRFPFHSNpETGELEDRAGAGVFFVWELFRPLIKGTTTVCIPDH-VLFDPDAVTKFVRDRGVTRILWTPSLLQLIMDTLTPEQVQDRLGGLRYLWLCGEVVSRHLAVSFTKLLPNVEFMNlYSISECHdVSIGDLKRELgpsensDGEVRKYATCGKAIPGVKFYIVDleqnddhEATTKTgvmqlVPEGATGEVYVGGPVvGRGYLHMPEKTADRFVKNPFLDLEgedKnihapRLYRTGDLGrVLPDSKELEILGRCDFMVKIRGYSVVLGAVETALAKHPKLSSAVVLAVGSEGsRDKKLVAYVVPA---SWEDPPSASSVRQFLK----EHVPPYAIPSTFCVIDALPVAASaaGKLDRKKL 579
                 56789999999999654.34455555544444554444133344555788999999**********99976543.3445555568899999************99999999999999******************99999999765555515555543134555666662221114456789999999999999998742222333333221111122334455556666514577777777888****98865533221222225899999984455556678************************************99987651556667777776...8889888877766555....56678999**********987654489888765 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0046         1     104     196 ..      53     146 ..      39     159 .. 0.78
   2 !   10.8   0.0   9.3e-05      0.02     263     340 ..     187     267 ..     161     288 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0046
   TIGR01217 104 lyvdeekesakvtfeelrrqvaslaaal.ralGvkkGdrvagylpnipeavaallatasvGaiwsscspdfGargvldr.fsqiepkllfsvdgy 196
                  + + ++ + ++t+ el +   +la  l    Gv++   v +++p  ++  +a+l+    G+ +      +  + +l+r  +  + kl+++v++y
  MMETSP1061-20121228|7427_1  53 SFSEPDEGTIQLTYRELDEITDKLAVILiEDYGVGPDAVVGTMFPRCAQYCVAILSILKAGGAYMPLELVYP-KFLLERaVNETNAKLVMTVEAY 146
                 5777789999***************9862679****999999*************99999998876554443.3344442456667777777776 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 9.3e-05
   TIGR01217 263 fdhplyilfssGttGvpkaivhsaGGtl...vqhlkehvlhcdltdgdrllyyttvGwmmwnflvsglatGatlvlydGsp 340
                  dh  + + ssGttGvpk i ++    +   ++ + ++ +h++ + g+      +  + +w+ +   +   +t+++ d   
  MMETSP1061-20121228|7427_1 187 ADHLAFAVMSSGTTGVPKGICQTHRAAVhsyLDRIVRFPFHSNPETGELEDRAGAGVFFVWELFRPLIKGTTTVCIPDHVL 267
                 68999***************9987666511155555677898888887666666666667775554444444556655544 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0058       1.3       1      20 [.     740     759 ..     740     789 .. 0.87
   2 ?    3.8   0.0     0.026       5.5      60     112 ..     833     882 ..     800     977 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0058
   TIGR04180   1 vlvtGadGfiGshlvealve 20 
                 v++tGa G++Gsh+  +l++
  MMETSP1061-20121228|7427_1 740 VFLTGATGYLGSHILSELLQ 759
                 689***********999987 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.026
   TIGR04180  60 daesvkkavkgvdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardle 112
                 d+++ k+ + ++d ++h  a + +  sy + +   e+nv Gt ++l+ a  ++
  MMETSP1061-20121228|7427_1 833 DEKQFKSLALEIDSIIHCGAEVNLIKSYSSLK---ESNVLGTQEILRLATTNG 882
                 55666777777888888888888887876544...678888888877665443 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.1   0.00055      0.12       2      24 ..     740     762 ..     739     980 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00055
   TIGR01179   2 iLvtGgaGyiGshvvrqllekgk 24 
                 + +tG++Gy+Gsh++ +ll+   
  MMETSP1061-20121228|7427_1 740 VFLTGATGYLGSHILSELLQIPE 762
                 679***************98644 PP

>> TIGR01850  argC: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00051      0.11       3      72 ..     740     811 ..     738     838 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00051
   TIGR01850   3 vaivGasGYtGaeLlrllakHpevevtklvssre....agkklsevhphlkglvdlkleeleeeeileeadvvf 72 
                 v + Ga+GY G  +l  l + pe++++ + ++ +    a ++l +++++++  + +++e+++ ++ +++ad+  
  MMETSP1061-20121228|7427_1 740 VFLTGATGYLGSHILSELLQIPEITTV-CLARAQddasAKQRLLSTMDKYQLRT-STIESIQSSSDAADADAAA 811
                 6789*********************88.55555535555555655655554333.3444444433344455443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.16u 0.16s 00:00:01.31 Elapsed: 00:00:00.70
# Mc/sec: 2140.11
//
Query:       MMETSP1061-20121228|7437_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 722.47
//
Query:       MMETSP1061-20121228|7435_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.2   0.0      0.045   11.2   0.0    1.5  1  TIGR00035 asp_race: aspartate racemase


Domain annotation for each model (and alignments):
>> TIGR00035  asp_race: aspartate racemase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.1e-05     0.045     124     158 ..     231     264 ..     210     273 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.1e-05
   TIGR00035 124 LgtegtikagvYerelkklGieivvPdkeeqekin 158
                 L+ +gt+++ +++r+l+k G++ vv dke+ +++ 
  MMETSP1061-20121228|7435_1 231 LA-TGTVEEKIFQRQLSKEGLQSVVDDKEQVNALS 264
                 44.59***********************9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 1830.63
//
Query:       MMETSP1061-20121228|7436_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1133.91
//
Query:       MMETSP1061-20121228|7438_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|7440_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 629.49
//
Query:       MMETSP1061-20121228|7442_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 741.65
//
Query:       MMETSP1061-20121228|7445_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 578.24
//
Query:       MMETSP1061-20121228|7441_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 2103.31
//
Query:       MMETSP1061-20121228|7448_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.9    4.1   9.6        6.8    3.6   6.7    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   6.7    0.0016       6.8      81     151 ..     116     198 ..     100     215 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0016
   TIGR00601  81 k...........akaaePaatpesaptptp.satpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdretl 151
                             a+ ++   +p+  pt +  ++   s+ +++++aP sav+  +  ++++ +  ++ +d+ +++++ds++et 
  MMETSP1061-20121228|7448_1 116 AsknrqakltsiAEINSALVAPTMGPTKSSwNPSTQSPVPAPTEAPKSAVQSPTMDPKNTVSLEPNVTDPVVSAPSDSNQETP 198
                 2334444444444555556678888887777888899999999********99999999999999999**9999999999864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 1919.34
//
Query:       MMETSP1061-20121228|7444_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-23   81.5   0.8    1.8e-23   81.1   0.5    1.1  1  TIGR02152 D_ribokin_bact: ribokinase
    6.5e-12   43.0   0.2    1.4e-11   42.0   0.1    1.5  1  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I
    6.9e-11   39.4   0.7      9e-11   39.0   0.5    1.2  1  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
    8.8e-10   35.9   0.4      1e-09   35.7   0.2    1.2  1  TIGR03828 pfkB: 1-phosphofructokinase


Domain annotation for each model (and alignments):
>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   0.5   1.8e-26   1.8e-23      48     287 ..      83     338 ..      39     342 .. 0.80

  Alignments for each domain:
  == domain 1    score: 81.1 bits;  conditional E-value: 1.8e-26
   TIGR02152  48 lgaevsmigkvGkDefgeellenlkkegidteyvkkvkktstGvAlilvdeegeNsIvvvaGaneeltpedvk..aaeekikesdlvllQ...lEipletveealkiakkagvkvlln.PAPae....kkldeellslvdiivpNetEaeiLtgie..vedledaekaaekllekgv...kaviitlGskGallvskd..ekkli.palkvkavDttaAGDtFigalavaLaegksledavrfanaaaalsVtrkGaq 287
                  ++++++ g+vG+De+g++l +  +++g++++y+k  ++t+tG  + l+++ ge s+v +  a ++++p++++  +a++ i+ +++       l +++ +  e+++ a +++++  ln  AP       ++ ++ + ++d++  Ne+Ea++  +++   edl+++  + ++l +k     ++v+ t Gs+ ++++ ++  ++  + p  k   vDt +AGD+F+g++ ++La+gk++e++v+ ++ aa + ++  G+q
  MMETSP1061-20121228|7444_1  83 KAKHTAFFGCVGDDETGKTLEKCAQSDGVHVHYMKD-TETPTGACAALIKD-GERSLVTNLDAANNFKPSHLQtdEAKQIIDLAKIYYSAgffLTVSVPSLVEVAEHAVANDKTFCLNlSAPFIvdffGDQMATAMPYADFLFGNESEAAAYGKKHgmGEDLKEIALKVAALPKKNEskpRTVVFTQGSESTIVAVNGtvTEYAVePLAKELLVDTNGAGDAFVGGFLAQLAQGKDMEACVKAGHWAAKFIIQTSGTQ 338
                 34899*****************************95.58999988888887.99999999999999999887621567789999998754222789999999****************67998622222345788899************99887643456666666666665554322489**********999888564444514556668********************************************9 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.1   1.3e-14   1.4e-11      63     304 ..      86     339 ..      24     344 .. 0.79

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 1.3e-14
   TIGR02198  63 evvlvgvvGkDeagkaleellkeegietsellkdkerpTtvKlRvlar..nqqllRvDfeek...kalseeeeeklleaikeklaeadavvlsDYakGvltkkvveeviaaarekgkpvlvDpkgkdfsk.YkgatlltPNrkEleeavg...aveeeeelvkaaekllee..leleallvTrsekGmtllekekev..lhlpaaake.vyDVtGAGDtViavlalalaagasleeaaelaNaaagvvvgklGtat 304
                 ++ ++g vG+De+gk+le+  +++g++  + +kd+e pT     ++    +  ++ +D  ++   ++l+++e +++++  k   ++   + +s      ++++ v++  +++ + + p +vD  g+++++    a  l  N++E+++  +     e+ +e+  + ++l ++   + ++++ T++ +   +   ++ v  + +   ake  +D  GAGD+ ++ + + la+g+++e +++ +  aa  +++  Gt+ 
  MMETSP1061-20121228|7444_1  86 HTAFFGCVGDDETGKTLEKCAQSDGVH-VHYMKDTETPTGACAALIKDgeRSLVTNLDAANNfkpSHLQTDEAKQIIDLAKIYYSAGFFLTVSVPSLVEVAEHAVANDKTFCLNLSAPFIVDFFGDQMATaMPYADFLFGNESEAAAYGKkhgMGEDLKEIALKVAALPKKneSKPRTVVFTQGSESTIVAV-NGTVteYAVEPLAKElLVDTNGAGDAFVGGFLAQLAQGKDMEACVKAGHWAAKFIIQTSGTQL 339
                 46789**********************.8999999999999888886532555678999876212456678888899888888888888888888888888888999999***************9877526789**********99988554455667777777888655005578999***988755554.444401556677887358******************************************985 PP

>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.5   8.8e-14     9e-11     143     291 ..     186     341 ..      63     346 .. 0.71

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 8.8e-14
   TIGR03168 143 edfyaelielakekgakvilDtsgeaLrealkakplliKPNkeEleelvgrel..kteee...vieaarellekGvenvlvSlGadGallvtkeg..alkaeapkve.vvstvGAGDsmvAgfllalekglsleealrlavAagsaaassegtelpd 291
                 e+++a+    + + +a++i+D  g+ + +a+ ++ +l   N++E +++ +++   ++++e    + a  + +e++ ++v+ + G++  +++ + +   + +e+++ e +v+t GAGD++v+gfl++l++g+++e +++ +  a+   ++++gt+l +
  MMETSP1061-20121228|7444_1 186 EHAVANDKTFCLNLSAPFIVDFFGDQMATAMPYADFLF-GNESEAAAYGKKHGmgEDLKEialKVAALPKKNESKPRTVVFTQGSESTIVAVNGTvtEYAVEPLAKElLVDTNGAGDAFVGGFLAQLAQGKDMEACVKAGHWAAKFIIQTSGTQLEK 341
                 44555555556678899**************9998886.6****9988665543344444332677778889999**********9988776665345778887777789***********************************999999999876 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.2     1e-12     1e-09     152     291 ..     195     341 ..      71     346 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 1e-12
   TIGR03828 152 llrekgakvilDtsgeaLlkvlkakplliKPNkeEleellg.....relkteeevieaarkllekgvenvlislGadGall.vtke.galfaka.pkievkstvGAGDsmvAgfllalekglsleealrlavAvgaaaassegtelpd 291
                  + + +a++i+D  g+++++++ +  +l   N+ E +++ +     ++lk+ +  + a  k  e++ + v+ + G++  ++ v+ +  ++  ++ +k  +++t GAGD+ v+gfl++l++g++ e++++ +  ++   ++++gt+l +
  MMETSP1061-20121228|7444_1 195 FCLNLSAPFIVDFFGDQMATAMPYADFLF-GNESEAAAYGKkhgmgEDLKEIALKVAALPKKNESKPRTVVFTQGSESTIVaVNGTvTEYAVEPlAKELLVDTNGAGDAFVGGFLAQLAQGKDMEACVKAGHWAAKFIIQTSGTQLEK 341
                 45566899***********9999998886.6****99886622222344444445667777789999*********987651555545677777567779*******************************99999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 1832.01
//
Query:       MMETSP1061-20121228|7449_1  [L=1775]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-18   62.5 195.2    2.1e-08   30.2  20.9    5.4  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    8.7e-14   48.0 194.3    1.3e-08   30.8  38.9    5.5  6  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9  30.1   1.7e-06    0.0035     230     496 ..     599     872 ..     580     886 .. 0.31
   2 !   30.2  20.9     1e-11   2.1e-08     677     940 ..     925    1181 ..     919    1186 .. 0.82
   3 !   12.9  34.0   1.7e-06    0.0035     237     521 ..    1265    1541 ..    1261    1547 .. 0.54
   4 !   11.9  19.8   3.5e-06    0.0071     685     900 ..    1555    1766 ..    1546    1774 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.7e-06
   TIGR02168 230 lvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrle..........eleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesl 496
                 + ++ e+l++ + +l++ ++ ++   e+  ++++e+++++e+ ++++ el+++ ++l +e+ ++++e +rl +e ++l++  +  ++++ ++e + ++l+ k++ le++l++l++ ++ l+ee  ++ ++ +++ ae+  l+++l+          + +ee+++++ e+++  ++ ++l+++l  +e++le++e+ ++++++e +e ++ l    + ++elq +l+ + eelee++ ++e++++ l+++    ++ +++l++ + +la  +++l++ 
  MMETSP1061-20121228|7449_1 599 IQKETEALRTMVVSLQSVKATLAMAGEKQMDRANEMTSAIEKWQHANDELSSDNNALSDEISKVRNESQRLASENAMLSRDNRTISEDILRIEGKCAQLQDKNNGLETDLTSLRDAFSLLEEEKSQIFSKKTALGAEITCLKTSLQkqiekstndaSIREEIKSVQLELSSKVNECSDLTSRLVLVEEKLEKSEALNAKFTKELKETKQGL---IQTISELQYQLDLRTEELEETRRRNEDAIADLQRMLSIEAASSEKLKQENMSLALRNSELQAQ 872
                 2222333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333222222222222200000000002233333333333333333333333333333333333333333333333332222...233444444444444444444444444444444433333333333333333333333333222 PP

  == domain 2    score: 30.2 bits;  conditional E-value: 1e-11
   TIGR02168  677 rkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleelevei 940 
                   ++e+e + +e + ++ ++ + ++ ++ l+k++++l++ l+   ++ e     l+ lk++  +   e+  l++r++++e+e + le + ee+++   ++++  +++  + ++++a+i++l++el++ r +l+++ a ++  ++e ++ ++r+++le+e+    ++l+e+++qi +l++e+   +++ e++++ ++ le+++ e +     +ee++ +l++++++ls+++ e+e +++el ++l++++++l++l+ ++e ++ + 
  MMETSP1061-20121228|7449_1  925 VSRELEAVARERDVVKGALIDSKTYIAGLKKQFDDLNSSLQLSSSDPE---LILDMLKEDRLKQLMEIGVLKRRISDIESEKNALEIQLEEYRKSSVKSQNDSAASALNATKEQAKIKKLQDELEQVRGQLQNATAGMHHSQNECTQWSSRCTDLEDEV----TRLNEVSDQIVRLRQELLHFQEANESQQDFIRSLETNISETERILCLKEEEIITLNKKQQSLSSSVVEVECERDELMTKLQNANNRLSELQSECEDVDEKN 1181
                  578999999999999999999999999999999999955555555544...468888888888888999999999999999999999999999999999999999999999999999999999999999999999999999999998888888777766....56778888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888776554 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 1.7e-06
   TIGR02168  237 lkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknkskla 521 
                  ++++ eel+++l+  +eel++++++  ele+ l+  ++  +e +++l+  +++l++l +e ++++++i   +++ ++l + +++l +++++  s++  ++e+ +++e  +  l+ ++e+l++ ++e    ++ +e ++ +l++ +++  se +e+++  + ++ +++ l++++e +++     ++e ++l++ l+e+e++l+e ++ l +++++ ++l ++l++  +a  e ++ele ++q++q++e+  a  ++rl+ l    e++e +    k+ l++++++a
  MMETSP1061-20121228|7449_1 1265 AQTHEEELQRKLQTHTEELRRKATKEGELENHLQLAQRTTQEYQDRLKMSEQKLNALISESEEMTKNIGNVDNSTKKLVDINSALRDKIRQMTSEQSAAAEQIQAMESHKLGLTGKVEDLQNLVDE---LIASFEIKEGKLQTTINQIDSEKNEISQICTVQETQISVLREQIEVSKAY----EEESTTLRRTLSELENKLSEQDRLLLQKDAAAQDLFHQLQNKGAAPIE-SAELEMLRQRVQDMEACTALDKERLRELGVKCEDAELELTRTKEELQSSEEMA 1541
                  455556666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666...45555555555555555555555555555555555555555555555555....234444445555555555555555555555555555555554444333.34555555555555555555555555544444444443334444444443333 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 3.5e-06
   TIGR02168  685 eeeieeleekiaelekelkelekeleeleeeleklrkeleele.rklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreelee 900 
                  e++ ++le++++++e+el  ++ e  ++++++++lrkel++ +  ++++ ++   +l + ++q+e   ++++++ +e++ ++e+ e+el  ++++++e++++i++l +++++++++l++++e+ + +++ ++el +e++++++         +++ + +++ +e+i++++ +i  l++++e+ e++++e+ e+   ++ke+++ +  l+++ + ++ 
  MMETSP1061-20121228|7449_1 1555 ESKNQMLESRLDQIERELMVAKGEEVKYRNAASDLRKELNSRDgSSITRSSEISGELVALQQQVETFQREKDETASEVRFRQEAMEQELLALKQAMAEKDDQIATLGDQMQAITSDLSQSQEESRTKQRIIDELTTELDKVKSI--APPPSSSEILEIARDQAENIDTMRSQIIWLAQKLEDSENKRAEAIEN---VEKERQKNADTLRRMTDTMKR 1766
                  567788999999999999999999999999999999999987513444444444555666666666667777788888888888899999999999999999999999999999999999999999999999999999975543..44456667777889999999999999999999999999976555555...555555555555555555444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1  11.5   7.5e-07    0.0015     322     489 ..     586     754 ..     578     765 .. 0.90
   2 !   12.0  28.0   3.2e-06    0.0065     676     967 ..     693     988 ..     691    1012 .. 0.67
   3 !   21.4  30.0   4.5e-09   9.2e-06     692     938 ..     990    1244 ..     974    1246 .. 0.76
   4 !   30.8  38.9   6.4e-12   1.3e-08     230     544 ..    1073    1397 ..    1067    1401 .. 0.75
   5 !   18.1  31.7   4.5e-08   9.3e-05     235     503 ..    1214    1475 ..    1208    1487 .. 0.89
   6 !    9.3  35.4   2.1e-05     0.042     664     972 ..    1431    1761 ..    1427    1766 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.5e-07
   TIGR02169 322 eerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeelek.lekelsel 489
                 ++ l++  a++  +++e e+l++ + + +  ++ l  + +++ ++ +e+ + +e+ +++++el    ++l  +++k+++e + l  e+  l    + ++e++ +++ + +++++k + le++l++l+++ +  e++ +q+  ++ ++ +e+  lk+ l+k +ek  +++
  MMETSP1061-20121228|7449_1 586 QKLLQNETAKRVLIQKETEALRTMVVSLQSVKATLAMAGEKQMDRANEMTSAIEKWQHANDELSSDNNALSDEISKVRNESQRLASENAMLSRDNRTISEDILRIEGKCAQLQDKNNGLETDLTSLRDAFSLLEEEKSQIFSKKTALGAEITCLKTSLQKqIEKSTNDA 754
                 6667788888888999***************************************************************************************************************************************999998764266655543 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 3.2e-06
   TIGR02169 676 klerlrerleeLereleslqselrriekrldelssklsdaekkieeiekele.qleeee..eklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekie...eieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiek..eie..elkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkkelekveee 967
                 k ++l+++ ++Le +l sl++  + +e++ ++  sk  +  ++i  ++  l+ q+e++   +  +e+++ ++ +ls+  +e  +  ++l  +e+++e+ e+  ak  ++l++ ++ l +   e   +++ ++e+lee+++r+e +++++++ l+ +  + e l++e   l  ++ el++q +++ +  + e  + +  +e+l+++l+  +++   L+++ ++ ++e+++ ++  rele      + e +  +  l + k+ ++ l+++ ++l++++  + ++++ el l+ +k+ + k   e
  MMETSP1061-20121228|7449_1 693 KCAQLQDKNNGLETDLTSLRDAFSLLEEEKSQIFSKKTALGAEITCLKTSLQkQIEKSTndASIREEIKSVQLELSSKVNECSDLTSRLVLVEEKLEKSEALNAKFTKELKETKQGLIQTISElqyQLDLRTEELEETRRRNEDAIADLQRMLSIEAASSEKLKQENMSLALRNSELQAQSQKNTQnhAFElsQKELAIESLNTQLKTVQKNSLRLSDQINNYAQEIKRFSSVSRELEAV----ARERDVVKGALIDSKTYIAGLKKQFDDLNSSL--QLSSSDPELILDMLKEDRLKQLME 988
                 678999*************99999999999999999999999988777665425665541145689999*******************************************999887643321136677889********************999988888888888887777777766554443113331133334556666666666666666666666666665554443333322....22233333344444555555555555555543..444444555555555555444333 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 4.5e-09
   TIGR02169  692 eslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaels.....eekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeele...eleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelsele 938 
                    l+++++ ie++ ++l+ +l++ +k+  + +++  + + ++ k+++++++l+++l+++  +l+++ + +++ ++e  +   +  +l++++  l++  +     ++++ + +e  e++++ ++++e  ++e+e+ l  +e e   l+++ q l +++ e+e  ++e+  ++++ + +l el++e e   e++ a+++L+eel++L ++r+ l++ +  l  ++ee+ ++    ++++ e++++l  + eel++ e
  MMETSP1061-20121228|7449_1  990 GVLKRRISDIESEKNALEIQLEEYRKSSVKSQNDSAASALNATKEQAKIKKLQDELEQVRGQLQNATAGMHHSQNECTQWSSRCTDLEDEVTRLNEVSDqivrlRQELLHFQEANESQQDFIRSLETNISETERILCLKEEEIITLNKKQQSLSSSVVEVECERDELMTKLQNANNRLSELQSECEdvdEKNEAIEQLSEELQELVNDRDILQSSMDDLAVENEEMLVQFGLLNEEMDEKEQELTRVREELKDRE 1244
                  346667777777777777777777777777777777777777777777777777777777777777777777777777777777777776655544332111114667778888888888899999999999999998888888899999999999999999999999999999999999998755222788899999999999999999999999999999999999999999999999999999999988765 PP

  == domain 4    score: 30.8 bits;  conditional E-value: 6.4e-12
   TIGR02169  230 lkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaei...dklkeeieelereieeekkereklkeelkelkeelee.......lraeleevdkeaaelreelkelkekleklkeelnelkreld.rlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasieGvlGtvaqLgkveerYalAiEv 544 
                     le+  + +++++ ++ +l++el +++e  e +++ + ++e +++e +++i  l eee++++ +k ++l++++ ++e + +e   +l++a++rl ++++e    d+++e ie+l++e++e   +r+ l++ +++l+ e ee       l +e++e+++e  ++reelk+++++l++l++ +   ++el+ r + + ++l+ +l+ + +el r+  k  ele++l+ ++   ++ + +l+  +++l+++ +e ++ ++++ ++++  ++l    ++l+ + +++ +e+   +++ + ++++  G  G+v +L +  ++ ++  E+
  MMETSP1061-20121228|7449_1 1073 CTDLEDEVTRLNEVSDQIVRLRQELLHFQEANESQQDFIRSLETNISE-TERILCLKEEEIITLNKKQQSLSSSVVEVECERDELMTKLQNANNRLSELQSECedvDEKNEAIEQLSEELQELVNDRDILQSSMDDLAVENEEmlvqfglLNEEMDEKEQELTRVREELKDRENELDDLRRTIMAYEKELRqRAQTHEEELQRKLQTHTEELRRKATKEGELENHLQLAQRTTQEYQDRLKMSEQKLNALISESEEMTKNIGNVDNSTKKLVDINSALRDKIRQMTSEQSAAAEQIQAMESHKLGLTGKVEDLQNLVDELIASFEI 1397
                  56778889999***********************************98.5789999***************************************999998761115566779999*******************9998888711111113455666666666667777777777777777766666664314555556666677777777777777777777777777777777777777777777777777777777777777777776666666666666666666555555566666666*********9987777777665 PP

  == domain 5    score: 18.1 bits;  conditional E-value: 4.5e-08
   TIGR02169  235 alekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakas 503 
                  ++  q   +++e++e+e+el+ + ee++++e+el  +++++ + +k++++ ++    ++++kl+  + e+++   +  e e++l+ a+++ ++++ +++  ++++++l  e ee  k+  ++ +  k+l +  ++lr ++ ++  e+ ++ e+ ++++ ++  l+ + ++l++  d l       e +  +l+  +++i ++++e+ +  +  + +i+  ++++    e  +++e+e   l+ +l++le++lse+ r l +++a a+ +
  MMETSP1061-20121228|7449_1 1214 EMLVQFGLLNEEMDEKEQELTRVREELKDRENELDDLRRTIMAYEKELRQRAQTHEEELQRKLQTHTEELRRKATKEGELENHLQLAQRTTQEYQDRLKMSEQKLNALISESEEMTKNIGNVDNSTKKLVDINSALRDKIRQMTSEQSAAAEQIQAMESHKLGLTGKVEDLQNLVDEL---IASFEIKEGKLQTTINQIDSEKNEISQICTVQETQISVLREQI----EVSKAYEEESTTLRRTLSELENKLSEQDRLLLQKDAAAQDL 1475
                  555666678899****************************************************************************************************************************************************************555555...4667788888888888888888888888888888888776665....4667899999999**************99999998887755 PP

  == domain 6    score: 9.3 bits;  conditional E-value: 2.1e-05
   TIGR02169  664 rsgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkeal.....edleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiq....elqeeieeleeqkke....iekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlk..elkaklealeeelseleee...v...keeeeepee..elslekvkkelekveeeleaLe 972 
                  r ++ vs++++e++  lr+ l eLe++l++  + l + + ++++l ++l++  +     ++ele+l+++ +  ++  +  +e+l+el  + e+++ el++ ++e+++ ee +++l+++l      + ++++ e+++++ie+el   + e  + +++++++ +eln+++ +    ++ei      lq+++e ++  k+e    ++ ++e+++++l +l++ ++e+  ++++L ++ + + ++ ++ ++e r  ++ ++el +e++k ++ +   +  + le++ ++ ++++     +   +++ e++e+     +e+v+ke++k    l+++ 
  MMETSP1061-20121228|7449_1 1431 REQIEVSKAYEEESTTLRRTLSELENKLSEQDRLLLQKDAAAQDLFHQLQNKGAA-PIESAELEMLRQRVQDMEACTALDKERLRELGVKCEDAELELTRTKEELQSSEEMAQQLQNDLflkqgTESKNQMLESRLDQIERELMVAKGEEVKYRNAASDLRKELNSRDGSSITRSSEISgelvALQQQVETFQREKDEtaseVRFRQEAMEQELLALKQAMAEKDDQIATLGDQMQAITSDLSQSQEESRTKQRIIDELTTELDKVKSIAPppSSSEILEIARDQAENIDTMrsqIiwlAQKLEDSENkrAEAIENVEKERQKNADTLRRMT 1761
                  5567788889999999999999999988876555555555555555555543322.23345556666666666666666666666666666666666666666666666666666655433322567788899*********************************9955555555544111146677766666665511115557899999999**************************************************9998742245666777777777776541112223344555544114568888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1775 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       546  (0.133106); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.33u 0.18s 00:00:02.51 Elapsed: 00:00:01.87
# Mc/sec: 1252.84
//
Query:       MMETSP1061-20121228|7453_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       541  (0.131887); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 591.08
//
Query:       MMETSP1061-20121228|7447_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 2976.58
//
Query:       MMETSP1061-20121228|7455_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 1457.88
//
Query:       MMETSP1061-20121228|7452_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   19.7   0.0    0.00031   19.1   0.0    1.3  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
  ------ inclusion threshold ------
      0.023   11.5   0.3      0.038   10.8   0.2    1.3  1  TIGR03863 PQQ_ABC_bind: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   1.5e-07   0.00031     112     142 ..       3      33 ..       1      34 [. 0.93

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.5e-07
   TIGR01444 112 lKiDvEGaEleVLrglaetleekvpaivlev 142
                 l iDvEG++++VL g+ ++l+++v+++ +e+
  MMETSP1061-20121228|7452_1   3 LSIDVEGYDADVLLGAGTDLLNRVEYLEFEY 33 
                 78************************99997 PP

>> TIGR03863  PQQ_ABC_bind: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.2   1.9e-05     0.038     238     295 ..      83     140 ..      79     155 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.9e-05
   TIGR03863 238 qsRFeklagRkmrelDyaawlavravgeavtrtksadpaklrdyllsdefelaafkGr 295
                 q+R ++++g +mr +D  +w+ v  v    + +  a+++++    ls++ e ++++ r
  MMETSP1061-20121228|7452_1  83 QKRLWRITGCWMRYYDIHTWANVACVNRRLVPKLAAKMEAVFRTTLSESYEGEGYRYR 140
                 89***********************************************999998744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 865.26
//
Query:       MMETSP1061-20121228|7450_1  [L=1012]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 4174.16
//
Query:       MMETSP1061-20121228|7456_1  [L=778]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 3020.22
//
Query:       MMETSP1061-20121228|7458_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 976.72
//
Query:       MMETSP1061-20121228|7460_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 854.46
//
Query:       MMETSP1061-20121228|7459_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   22.5   0.0      0.029   11.3   0.0    2.2  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   3.4e-05      0.14      90     112 ..      50      72 ..      29      81 .. 0.69
   2 !   11.3   0.0     7e-06     0.029       5      88 ..     269     351 ..     265     372 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 3.4e-05
   TIGR03866  90 lepdgkllyianeddalvtvvdi 112
                  ++dg++l++a e d+ vt+vd 
  MMETSP1061-20121228|7459_1  50 YHSDGNHLFVATEMDSKVTIVDA 72 
                 45666666666666666666664 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 7e-06
   TIGR03866   5 aasaaaekiyvsnekdntisvidletlevvktlkvGerPrGit..lskdgkllyvcasdsdavqvldaeteevlkelpsGedPelf 88 
                 a +a+ + i v  e++ ++ v+d  + +v++ + + +r +G++  +++d+k+++v  sd+  ++v d+++   +++l  G+ P   
  MMETSP1061-20121228|7459_1 269 AFNATGNRILVQSEEGLSL-VLDGYEGTVQR-VFASTRGKGVVscFTPDEKSVLV-GSDAGIIDVYDVQSGMAVRKLEGGHGPSGS 351
                 5566677777777766554.67777777665.5567999**96447899999987.69**********************999644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1833.18
//
Query:       MMETSP1061-20121228|7463_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|7468_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|7462_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.44
# Mc/sec: 1340.89
//
Query:       MMETSP1061-20121228|7470_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1852.92
//
Query:       MMETSP1061-20121228|7475_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-10   38.6   3.5    4.1e-06   24.5   1.3    2.3  2  TIGR02287 PaaY: phenylacetic acid degradation protein PaaY
    2.1e-05   22.0   4.2     0.0012   16.3   1.4    2.3  2  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    0.00046   17.4   1.0     0.0042   14.2   0.2    2.1  2  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0037   14.0   0.5     0.0058   13.3   0.1    1.6  2  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
  ------ inclusion threshold ------
      0.027   10.6   0.5      0.051    9.7   0.2    1.5  2  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
      0.055   10.7   1.2       0.32    8.2   0.4    2.4  3  TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
      0.079   10.4   5.3        1.2    6.6   0.0    2.4  3  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR02287  PaaY: phenylacetic acid degradation protein PaaY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.6e-05    0.0094       8      44 ..      67     104 ..      63     108 .. 0.87
   2 !   24.5   1.3     7e-09   4.1e-06      46     111 ..     215     279 ..     205     280 .] 0.90

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.6e-05
   TIGR02287   8 tpvvhee.ayvhpsavligdvivgkrvyvgplaslrgd 44 
                 +pvv e+ a++ p a lig v++g++  v  ++ lr d
  MMETSP1061-20121228|7475_1  67 KPVVSEDvAFLAPCATLIGSVHIGAGSSVFYKSILRAD 104
                 688876439******************99999999988 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 7e-09
   TIGR02287  46 grivlkeganvqdtcvmhgfpgqdtvveenghvghgailhgcrvgrnalvgmnavvmdgavigess 111
                 g i + + +n+qd c++       t +++   +gh a +h+ +v  ++l+gm +++ +g v+ e+s
  MMETSP1061-20121228|7475_1 215 GGIFVGKDTNIQDGCIIDAKT-DHTRIGNGVTIGHLASIHSATVHDHCLIGMGSLLQEGVVVMEES 279
                 67889999*********9865.568899999*****************************999987 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0    0.0039       2.3     139     164 ..      72      97 ..      68     105 .. 0.80
   2 !   16.3   1.4   2.1e-06    0.0012     132     186 ..     219     269 ..     204     280 .] 0.45

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0039
   TIGR03570 139 gdfvhiapgatlsGgvkigegvfiGa 164
                 +d + +ap atl G v+ig g+ +  
  MMETSP1061-20121228|7475_1  72 EDVAFLAPCATLIGSVHIGAGSSVFY 97 
                 57888999999999999999987755 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 2.1e-06
   TIGR03570 132 veHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaGavV 186
                 v+ d+ i+d + i ++     + +ig+gv iG  A++    t+ +++++G+G++ 
  MMETSP1061-20121228|7475_1 219 VGKDTNIQDGCIIDAKTD---HTRIGNGVTIGHLASIH-SATVHDHCLIGMGSLL 269
                 334444444444443332...34444444444444432.3344444444444432 PP

>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.036        21     201     236 ..      68     103 ..      33     107 .. 0.84
   2 !   14.2   0.2   7.2e-06    0.0042     172     240 ..     208     275 ..     107     279 .. 0.65

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.036
   TIGR03991 201 pivigkdakveefsflegpvyigegarvkagarikg 236
                 p+v ++ a + + + l g v+ig+g+ v  ++ +++
  MMETSP1061-20121228|7475_1  68 PVVSEDVAFLAPCATLIGSVHIGAGSSVFYKSILRA 103
                 45555556799****************988877765 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 7.2e-06
   TIGR03991 172 svvvvkekavfieegakvkegavldasdGpivigkdakveefsflegpvyigegarvkagarikggtsi 240
                 s+       +f+++++++++g ++da+     ig+++++   + ++  + +  ++ + +g+ +++g+++
  MMETSP1061-20121228|7475_1 208 SNSTATGGGIFVGKDTNIQDGCIIDAKTDHTRIGNGVTIGHLASIHS-ATVHDHCLIGMGSLLQEGVVV 275
                 4555666789********************************99986.567888888888888887765 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       1.2     7e+02     405     424 ..      75      95 ..      69     104 .. 0.60
   2 !   13.3   0.1   9.9e-06    0.0058     257     313 ..     211     270 ..     138     279 .. 0.61

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.2
   TIGR01173 405 qlvaPv.kvgdgatiaaGstv 424
                 +++aP  ++   + i+aGs v
  MMETSP1061-20121228|7475_1  75 AFLAPCaTLIGSVHIGAGSSV 95 
                 555664233445666777655 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 9.9e-06
   TIGR01173 257 vllekdveigqdvviepnvilegk...vkigedvviGagsvikdsaikenakikaysvle 313
                 +   + + +g+d+ i+ ++i+  k   ++ig++v+iG  + i+ +++++++ i   s l+
  MMETSP1061-20121228|7475_1 211 TATGGGIFVGKDTNIQDGCIIDAKtdhTRIGNGVTIGHLASIHSATVHDHCLIGMGSLLQ 270
                 344455566666666666666654222456666666666666666666666665444443 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.53   3.1e+02     651     673 ..      74      96 ..      41     105 .. 0.47
   2 ?    9.7   0.2   8.7e-05     0.051     633     679 ..     233     276 ..     215     279 .. 0.62

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.53
   TIGR02353 651 gatlgpsaivlygavvgedavlg 673
                  a l+p a    ++ +g+++ + 
  MMETSP1061-20121228|7475_1  74 VAFLAPCATLIGSVHIGAGSSVF 96 
                 33344444444444444444333 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 8.7e-05
   TIGR02353 633 tHlfedrvlkvdtvtigdgatlgp.....saivlygavvgedavlgpdslvM 679
                 +        k+d+ +ig+g+t+g      sa v+   ++g ++ l++  +vM
  MMETSP1061-20121228|7475_1 233 A--------KTDHTRIGNGVTIGHlasihSATVHDHCLIGMGSLLQEGVVVM 276
                 3........8899999999999972112134555566666666666666666 PP

>> TIGR00965  dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.21   1.2e+02     171     244 ..      66     135 ..      61     157 .. 0.64
   2 ?    0.5   0.0      0.12        71     177     210 ..     214     250 ..     205     255 .. 0.61
   3 ?    8.2   0.4   0.00055      0.32     156     198 ..     240     279 ..     216     280 .] 0.74

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.21
   TIGR00965 171 akpviiedncfigarseivegviveegsvismgvfigqstkivdretgeiiygrvpagsvvvsgslpskdgkks 244
                  kpv+ ed  f+   + ++  v +  gs     vf  +  +  + +  e +  r  +   + sg+  s   + s
  MMETSP1061-20121228|7475_1  66 GKPVVSEDVAFLAPCATLIGSVHIGAGSS----VFYKSILRADNCDNAEAFSSRSTSALAIESGESSSSSSSSS 135
                 57888888888888888888888888874....45555555555666666666666555556665555555544 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.12
   TIGR00965 177 edncfigarseivegvive...egsvismgvfigqst 210
                     f+g  ++i +g i++   + + i  gv ig+ +
  MMETSP1061-20121228|7475_1 214 GGGIFVGKDTNIQDGCIIDaktDHTRIGNGVTIGHLA 250
                 5566778788888887776222345677777777655 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00055
   TIGR00965 156 lsggvgiggvleplqakpviiedncfigarseivegviveegs 198
                 +  gv ig  l  +  + + + d c+ig  s + egv+v e s
  MMETSP1061-20121228|7475_1 240 IGNGVTIGH-LASI--HSATVHDHCLIGMGSLLQEGVVVMEES 279
                 455566654.3333..445689****************99876 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0     0.002       1.2     159     200 ..      67     108 ..      64     117 .. 0.89
   2 ?   -3.4   0.1       2.1   1.3e+03      40      68 ..     135     163 ..     118     174 .. 0.62
   3 ?    5.6   0.7     0.004       2.3     116     181 ..     216     275 ..     208     280 .] 0.68

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.002
   TIGR03532 159 kpvvieddvliGanavileGvkvGkGavvaaGaiviedvpen 200
                 kpvv ed  ++   a ++  v++G+G+ v   +i+  d  +n
  MMETSP1061-20121228|7475_1  67 KPVVSEDVAFLAPCATLIGSVHIGAGSSVFYKSILRADNCDN 108
                 89*****99********************9999998887665 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.1
   TIGR03532  40 edlkvlfgeledveklleankdkikdyei 68 
                     +++ + +d ++  ++n++++++   
  MMETSP1061-20121228|7475_1 135 SSNSIIINNHDDNDNNNDSNNNNNNNTDG 163
                 44566666666666666666666655554 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.004
   TIGR03532 116 GaeiGegtmidmnavlGgraivGknvhiGaGavlaGvieppsakpvvieddvliGanavileGvkv 181
                 G  +G++t i+ ++++ +++    ++ iG G  +  +   +s +  +++d+ liG  + + eGv v
  MMETSP1061-20121228|7475_1 216 GIFVGKDTNIQDGCIIDAKT---DHTRIGNGVTIGHL---ASIHSATVHDHCLIGMGSLLQEGVVV 275
                 45677777777777777765...46677777655433...56666677888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1119.91
//
Query:       MMETSP1061-20121228|7474_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1435.38
//
Query:       MMETSP1061-20121228|7478_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 310.17
//
Query:       MMETSP1061-20121228|7477_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 2037.91
//
Query:       MMETSP1061-20121228|7481_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 719.94
//
Query:       MMETSP1061-20121228|7479_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-05   19.7  23.0    3.7e-05   19.4  15.9    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    9.2e-05   18.2  24.6    0.00012   17.7  17.1    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
        2.4    6.3  20.7      0.017   13.2   3.1    3.1  3  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4  15.9   2.7e-08   3.7e-05     212     417 ..     227     440 ..     208     448 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.7e-08
   TIGR02169 212 erYkeLkkekreleltlllkelealekqkekiekelaeleeelekleeeiee.lekeleeiekkleelnkkieklgee.eq..lavkekleelkaeiekleraiaekeeele....daeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelk 417
                 e Y+++  e  e + +l  ++++a e+  +  +++++  e+ +++  + ie+   ke+++ e++++  +++ie  +++ e+   ++++k +e+   + +le++++ ++++l+    +a++++ak+++ +d +  e+++l++e+e+ k+  e+l+e+l+++ e le   ++++ ++k+a+ l   l++ +    ++  + +e +r++++  +++ 
  MMETSP1061-20121228|7479_1 227 EGYRNVAVECMERASWLERASKNARERTEKDYQQRIKGYEQFQAQQLKMIEDvHTKEIANFEATVKSQEEEIELRSKDfEAldQHLQAKTKEFLDRVGSLEKSMKTANRQLQglldKAKKEKAKTQVALDVKTVEVDDLSTELEQSKALIESLSEQLEQRTEDLEIALEDMDTLNKHAEWLESTLESIRLLSTAVSPQVEEYQRNNEHQSDTST 440
                 569999999999****************************98888888887725799***************988877333225799999999999999999999999998744447889999999************************************************999999999999999999999999*****99999988775 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7  17.1     9e-08   0.00012     750     934 ..     245     426 ..     220     444 .. 0.29

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9e-08
   TIGR02168 750 rlaqlekelee..leeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrle 934
                 r++++ +e++e  ++++++ +e+  +++ + + + + +ei++ ea+++ ++ee++  ++++++l + l+ ++ke ++    r+ slek ++ ++++l+ l +++++++++ + ++  +++ e   ++l++ele+ ++  +sl+e+l+++ e+le + e++++l+k+++ le  le+ r   ++++ ++e
  MMETSP1061-20121228|7479_1 245 RASKNARERTEkdYQQRIKGYEQFQAQQLKMIeDVHTKEIANFEATVKSQEEEIELRSKDFEALDQHLQaKTKEFLD----RVGSLEKSMKTANRQLQGLLDKAKKEKAKTQ-VALDVKTVEV--DDLSTELEQSKALIESLSEQLEQRTEDLEIALEDMDTLNKHAEWLESTLESIRLLSTAVSPQVE 426
                 22222222221002222222222222221111133334444444444444444444444444444444422222222....2222222222222222222222222222211.1111111111..1222222222222222222222222222222222222222222222222222222222222222 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.3      0.29   3.9e+02      48      82 ..     242     274 ..     229     283 .. 0.53
   2 ?    1.0   2.8     0.078   1.1e+02      26      84 ..     282     337 ..     268     349 .. 0.64
   3 ?   13.2   3.1   1.3e-05     0.017      12      93 ..     353     434 ..     349     437 .. 0.96

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.29
   TIGR03495  48 qleallaeakrneeaqaqLrqqlaqaeallaqrek 82 
                  le+++++a+++   +++ +q  +  e+  aq  k
  MMETSP1061-20121228|7479_1 242 WLERASKNARER--TEKDYQQRIKGYEQFQAQQLK 274
                 455555444433..233344444555555555555 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.078
   TIGR03495  26 aslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrekri 84 
                 +++++ e+++k+q++e+e +++  eal ++++++ ++     + + ++e+ +++ ++++
  MMETSP1061-20121228|7479_1 282 KEIANFEATVKSQEEEIELRSKDFEALDQHLQAKTKEFL---DRVGSLEKSMKTANRQL 337
                 567777788888888888888888888888877765432...23333344444444444 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 1.3e-05
   TIGR03495  12 lalglqsqrlrearaslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrekrierLlrenee 93 
                 +al +++ ++++++++le+ ++ +++ +++le+++  le +l+++++ ++  + L+ +l++ + l+     ++e+  r+ne+
  MMETSP1061-20121228|7479_1 353 VALDVKTVEVDDLSTELEQSKALIESLSEQLEQRTEDLEIALEDMDTLNKHAEWLESTLESIRLLSTAVSPQVEEYQRNNEH 434
                 789999*********************************************************************9999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       371  (0.0904437); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 1649.86
//
Query:       MMETSP1061-20121228|7483_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1167.06
//
Query:       MMETSP1061-20121228|7482_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1939.22
//
Query:       MMETSP1061-20121228|7484_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.39
# Mc/sec: 250.44
//
Query:       MMETSP1061-20121228|7486_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 436.14
//
Query:       MMETSP1061-20121228|7488_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-16   58.0   0.0    1.5e-15   55.0   0.0    2.0  1  TIGR00079 pept_deformyl: peptide deformylase


Domain annotation for each model (and alignments):
>> TIGR00079  pept_deformyl: peptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   3.6e-19   1.5e-15       7     148 ..     128     286 ..     124     300 .. 0.76

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 3.6e-19
   TIGR00079   7 ypddalreiakpvekv..ddkiekllddmietmiaeeGiGlAApQvgikkrllvvdledek..kekklvliNPkiiekseeksvle..EGCLSvpe..............vkgdviRaekvkikaldregkeitleakgllaiviQHEiDHLnGvlfvdkis 148
                 ypd+alr++a pv++     ++e +   +ie mi   G    A Q gi+ r++v++   +   + ++lvl+NP+++++s+e  ++   E C  +p+              v+ d+ R + v++ a+d +gk++   ++g  a+++QHE+DHLnG+l vd+ +
  MMETSP1061-20121228|7488_1 128 YPDPALRTTAAPVRTSlgSRELETVTGLLIEAMI---GNATTALQYGIDARIVVLRGASSPseDGEPLVLVNPNVLARSSEDKMVPwrESCGVIPHpsednqndsdntalVEIDLLRDAVVEVAAQDVTGKPVRKALSGEAARAFQHELDHLNGILIVDHAD 286
                 6888888888887653113444444444455544...5556799***********97766545889*************999999778***9998533333333333332345789*******************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1652.31
//
Query:       MMETSP1061-20121228|7487_1  [L=789]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (789 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 2975.41
//
Query:       MMETSP1061-20121228|7490_1  [L=664]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (664 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 3022.10
//
Query:       MMETSP1061-20121228|7492_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.61    6.2   5.8       0.72    6.0   4.0    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   4.0   0.00017      0.72     336     440 ..      62     170 ..      21     177 .. 0.39

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00017
   TIGR02442 336 deekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavska.....rargasGrrsktrsdkrgryvkaernreeaddlavdAt 440
                 de  ed++++k+ +++++ +++ +++d+++++d+ ++ +++ + +++ ++++++  f +++++ +k+     r+ ++  + s  r+++++  +++ ++ ++ ++l +dAt
  MMETSP1061-20121228|7492_1  62 DEGAEDDNHDKNCNDNNHYNNHYNNHDNNHDNDNDNDGKNDGK-NNDNKTSNNSPRFFIRSTRIPKRkliieRTDDDDQHFSSFRNKRKKVKIHQGNHMNSYKRLYLDAT 170
                 2222222211111111111111111122222222222222221.233344444444444444444443332123344444445555555555555555556777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1162.76
//
Query:       MMETSP1061-20121228|7491_1  [L=829]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    9.7   0.4       0.23    8.8   0.3    1.3  1  TIGR03747 conj_TIGR03747: integrating conjugative element membrane protein, PFL_4697 family


Domain annotation for each model (and alignments):
>> TIGR03747  conj_TIGR03747: integrating conjugative element membrane protein, PFL_4697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.3   5.7e-05      0.23      42     110 ..     342     411 ..     339     425 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 5.7e-05
   TIGR03747  42 galhsqqmltkelgylseeltrsllvqePaetaselvktayewlfvksGlldwlqkekevaakeeee.ad 110
                 + ++s++++ +el yl + +      ++   +a ++v +a+ew  +++Gl++  +++k+  ++ee+  a+
  MMETSP1061-20121228|7491_1 342 ASSKSTEVMGEELRYLKKAVDIMRRRNQDDLAADQAVIEAKEWEQIQKGLEKEAKQAKKRREQEERLaAE 411
                 56799**************9999999999999**********************9999866555543333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       589  (0.143588); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.97u 0.16s 00:00:01.12 Elapsed: 00:00:00.67
# Mc/sec: 1633.12
//
Query:       MMETSP1061-20121228|7494_1  [L=1140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 3669.94
//
Query:       MMETSP1061-20121228|7497_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|7496_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-33  113.2   0.0    5.4e-25   86.0   0.0    2.1  2  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    1.8e-07   28.8   0.0    2.8e-07   28.2   0.0    1.2  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.2e-09   2.4e-06       2      32 ..      61      91 ..      60     103 .. 0.89
   2 !   86.0   0.0   2.6e-28   5.4e-25      54     169 ..     145     262 ..     139     266 .. 0.95

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.2e-09
   TIGR03633  2 aYDraitvfsPdGrlyqveYareavkrgtta 32
                aYDr it f  dGrl qveY  ea  rg+t 
  MMETSP1061-20121228|7496_1 61 AYDREITTFTEDGRLAQVEYGLEASLRGSTV 91
                9***************************985 PP

  == domain 2    score: 86.0 bits;  conditional E-value: 2.6e-28
   TIGR03633  54 leaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk..earlfetdPsGalleykavaiGagrekvle 169
                 +e++s  k+++iDdh+ + taGl +Dar+l ++ar++ q +rl+Y+e+ +v + a+  ad++ q t++GG rP G + l+ G+d     arl +tdP+G + e  + a G++r++v  
  MMETSP1061-20121228|7496_1 145 IEHSSFGKMHRIDDHLWMITAGLSGDARMLANMARRSCQNHRLRYGEAPSVGQAARITADFHHQLTRMGGCRPMGCTALLLGIDPLtgVARLVRTDPGGGCEECGSCAAGRSRDAVAR 262
                 7999********************************************************************************754489***********************99876 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   1.4e-10   2.8e-07      27     130 ..     145     254 ..     138     262 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 1.4e-10
   TIGR03634  27 vasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllkss....kflpflvqllvgGvde.eg.pklyslDplGsiiedkytatG 130
                 +++ ++ K+++idd++ + +aG+ gda+ l+++ +  ++  +lr ++  sv ++a++++ + ++      + p+  ++l+ G+d  +g ++l   Dp G++ e    a+G
  MMETSP1061-20121228|7496_1 145 IEHSSFGKMHRIDDHLWMITAGLSGDARMLANMARRSCQNHRLRYGEAPSVGQAARITADFHHQLtrmgGCRPMGCTALLLGIDPlTGvARLVRTDPGGGCEECGSCAAG 254
                 7889999****************************************************9988862222467999*********8755589999***9999887666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 2078.83
//
Query:       MMETSP1061-20121228|7493_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-11   40.2   0.0    1.6e-05   22.3   0.0    2.4  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    3.5e-06   24.7   0.3     0.0021   15.5   0.1    2.2  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    0.00073   16.8   0.0       0.03   11.5   0.0    2.3  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
     0.0016   15.4   0.2      0.025   11.4   0.0    2.7  3  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
     0.0049   13.9   0.0     0.0096   13.0   0.0    1.4  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   1.9e-08   1.6e-05       3      48 ..     107     156 ..     105     182 .. 0.71
   2 !   15.7   0.0   2.1e-06    0.0017      69     110 ..     202     246 ..     172     261 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1.9e-08
   TIGR03695   3 pvlvlLHGflgskedwqalieel....eekfsvlalDLpgHGkskslkek 48 
                 + ++ LHG l++ ++++ ++++l     ++ +++a+DLpgHG s++   +
  MMETSP1061-20121228|7493_1 107 RRILALHGWLDNCRSFHYIAPRLvenlGAQAELVAIDLPGHGWSSHRPMD 156
                 56899************9877662222678899*********98754333 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 2.1e-06
   TIGR03695  69 kiekviLvGYSlGGRialalaleaperlegli...lesaspGLes 110
                 + +kviLvG S+GG +a+++a  +pe++++++   + + +pG  +
  MMETSP1061-20121228|7493_1 202 NDNKVILVGHSMGGGMAVTYAGVFPEQISHVVsldMMGPEPGTPK 246
                 6899**********************8776652225566666555 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   2.6e-06    0.0021       6      46 ..     108     152 ..     104     179 .. 0.73
   2 !    7.2   0.0    0.0009      0.74      62      95 ..     201     234 ..     165     240 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.6e-06
   TIGR01738   6 klvLihGWglnaevfadl....veeLsahftlslvDLPGyGdsae 46 
                 +++ +hGW  n   f+ +    ve+L a+ +l ++DLPG+G s++
  MMETSP1061-20121228|7493_1 108 RILALHGWLDNCRSFHYIaprlVENLGAQAELVAIDLPGHGWSSH 152
                 56789******99998761111566778899**********8653 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0009
   TIGR01738  62 qapakaiwlGWsLGGLvalhlalthpdkvrsLvl 95 
                 + ++k i++G s+GG +a+  a  +p++++ +v 
  MMETSP1061-20121228|7493_1 201 DNDNKVILVGHSMGGGMAVTYAGVFPEQISHVVS 234
                 5678999*********************999886 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   3.7e-05      0.03      32      82 ..     129     182 ..     121     184 .. 0.80
   2 ?    2.6   0.0     0.019        16      79     108 ..     204     233 ..     198     240 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.7e-05
   TIGR02427  32 vlealtkdfrvlryDkrGHGlS..dvpegpysi.edladdvlallDalgiekaa 82 
                  +e+l ++ +++++D +GHG S    ++gp +i  + a  ++++lDalg+ ++a
  MMETSP1061-20121228|7493_1 129 LVENLGAQAELVAIDLPGHGWSshRPMDGPTTIlSEGAYYIAEVLDALGWGEFA 182
                 67899****************9443457788872556778999*****998765 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.019
   TIGR02427  79 ekaavcGlSlGGliaqaLaarrpdrvealv 108
                 +k+ ++G S+GG +a + a   p++++++v
  MMETSP1061-20121228|7493_1 204 NKVILVGHSMGGGMAVTYAGVFPEQISHVV 233
                 67889*******************999987 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   3.1e-05     0.025      30      69 ..     108     151 ..      75     178 .. 0.80
   2 ?   -0.2   0.0       0.1        85      98     125 ..     207     234 ..     200     240 .. 0.78
   3 ?   -1.2   0.0      0.21   1.8e+02     214     267 ..     350     403 ..     342     413 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.1e-05
   TIGR03056  30 vllllhGagasshsfr....klvpllaarfrvvapdlPGhGftr 69 
                  +l lhG      sf     +lv +l a+  +va+dlPGhG + 
  MMETSP1061-20121228|7493_1 108 RILALHGWLDNCRSFHyiapRLVENLGAQAELVAIDLPGHGWSS 151
                 5788999999999998222245667788999**********974 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.1
   TIGR03056  98 aviGhsaGaaialrlaldlpvrPravvg 125
                  ++Ghs G+ +a+  a   p +   vv+
  MMETSP1061-20121228|7493_1 207 ILVGHSMGGGMAVTYAGVFPEQISHVVS 234
                 589********99988777766666666 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.21
   TIGR03056 214 ralpriavPvlliageedkavppdvskeaatrlplatlrevpGlGhlvheedad 267
                   l r++  v l+a+e+      d   +a + l    ++++pG  h+  + d++
  MMETSP1061-20121228|7493_1 350 SILGRVECRVCLLAAEDGYPFQQDRIDRAVAGLEPDMYEVLPGSHHFHADPDTA 403
                 5678899999999999999999999999999999999******66654443333 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.2e-05    0.0096     101     134 ..     204     240 ..     198     250 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.2e-05
   TIGR03343 101 ekahlvgnsmggatalnfaleypdrlgkli...lmgp 134
                 +k  lvg smgg  a+ +a  +p+++++++   +mgp
  MMETSP1061-20121228|7493_1 204 NKVILVGHSMGGGMAVTYAGVFPEQISHVVsldMMGP 240
                 6889**********************99884445666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 2675.32
//
Query:       MMETSP1061-20121228|7495_1  [L=961]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (961 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 3624.04
//
Query:       MMETSP1061-20121228|7498_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.21
# Mc/sec: 2822.05
//
Query:       MMETSP1061-20121228|7499_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-13   47.5   0.0    2.6e-11   41.0   0.0    2.2  1  TIGR01607 PST-A: Plasmodium subtelomeric family
    1.5e-08   32.2   0.1    2.4e-08   31.5   0.0    1.2  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    4.5e-06   23.7   0.1      3e-05   21.0   0.0    1.9  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
      8e-06   23.2   0.2    2.1e-05   21.8   0.1    1.7  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    8.8e-05   19.7   0.0    0.00012   19.2   0.0    1.2  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
    0.00016   19.3   0.2     0.0055   14.2   0.1    2.3  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    0.00034   18.0   0.0    0.00051   17.5   0.0    1.3  1  TIGR03101 hydr2_PEP: exosortase A system-associated hydrolase 2
     0.0055   13.6   0.0      0.015   12.1   0.0    1.6  2  TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
  ------ inclusion threshold ------
      0.013   12.7   0.4        1.1    6.4   0.0    2.1  2  TIGR03611 RutD: pyrimidine utilization protein D
      0.024   11.8   0.0       0.04   11.0   0.0    1.4  1  TIGR03100 hydr1_PEP: exosortase A system-associated hydrolase 1
      0.032   11.1   0.0      0.044   10.6   0.0    1.1  1  TIGR00976 /NonD: hydrolase CocE/NonD family protein


Domain annotation for each model (and alignments):
>> TIGR01607  PST-A: Plasmodium subtelomeric family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   6.9e-14   2.6e-11      68     329 ..      58     298 ..      55     301 .. 0.72

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 6.9e-14
   TIGR01607  68 eklnkeGysvyaldlqghGesdglenlrghikkfddlvddviqyikkikdeiikekkeksddeskdivekkkkrlplyivGlsmGgnialrvlellnkskelldk..lnikGcislsGmisikevaskdsskfkylylpvvkllsriaptvriskklkyekfpyvndlikfdkyrydg.titkklaselikaldtlnkdidyipkdipllfihskddcicyyegvvlfynklnienkelytvedmdhvltiepG..nekvlekiiew 329
                 e l + Gy v a+d+ ghG+s+g   lrg +k+ ddl++d i  +++ k+  +                   k+lpl + G smGg ial v + ln+ +e  ++       +i ++ m++++  + +++      y   +   +r+ p+  + + ++y+  +  +++++  ++   g +++   a   + ++ ++ + +d i +  p l++ + +d +   eg ++f++k  +++k   +   + h l  ep    +++ + i++w
  MMETSP1061-20121228|7499_1  58 EFLAEAGYGVVAIDFPGHGKSEG---LRGYLKSADDLIEDGIAMLQHAKSLYSD-----------------AKNLPLVLCGSSMGGAIALSVAHRLNQMQEKDKDptFVAPSLILMAPMLKLNVSSLEHTALQCLAY---MVPTARLIPSKATDPSKQYRDEKKREEVLNDPQNTPPGtKLRIGSALTCVDTTLKIMEAFDSITN--PYLLLIADEDVVVKNEGSEVFHQKSPSQDKTKKNYPAL-HGLLCEPPplCDTIKNDILDW 298
                 557889***************99...79**************999887643332.................248***********************9999543311234568888999998766555544433333...33457788999999999999999999998865554433134444555556667777778888876..8899999*****************99888865444433.444444431245566666666 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   6.5e-11   2.4e-08       3      94 ..      36     135 ..      34     139 .. 0.71

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 6.5e-11
   TIGR03695   3 pvlvlLHGflgske..dwqalieele.ekfsvlalDLpgHGkskslk......ekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleape 94 
                  ++vl HGfl  ++  + +  +e l+ + + v+a+D pgHGks+ l+      ++  +d  +++q+ +k+l +  k+ +++L+G S+GG ial++a + ++
  MMETSP1061-20121228|7499_1  36 ALVVLYHGFLAHGAypTVRYGAEFLAeAGYGVVAIDFPGHGKSEGLRgylksaDDLIEDGIAMLQH-AKSLYSDAKNLPLVLCGSSMGGAIALSVAHRLNQ 135
                 578999***966543377888888854899*************75531110002223333344455.67788888999****************9987665 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.9e-08     3e-05      11     114 ..      15     131 ..       8     137 .. 0.69
   2 ?    0.1   0.0      0.18        69     214     239 ..     232     257 ..     222     271 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 7.9e-08
   TIGR03056  11 vdvgpfdWlv...rdeGpaaGPvllllhGagassh..sfrklvpllaa.rfrvvapdlPGhGftratarfrfslkamaedlakllaae.......dlsPdaviGhsaGaaialrlal 114
                 v++ + + +v   + eG +   +++l hG  a +   + r     la+  + vva+d+PGhG +     +  s + + ed  ++l++        +  P ++ G s G+aial +a 
  MMETSP1061-20121228|7499_1  15 VSIRGTNCCVhhyQAEGSSPKALVVLYHGFLAHGAypTVRYGAEFLAEaGYGVVAIDFPGHGKSEGLRGYLKSADDLIEDGIAMLQHAkslysdaKNLPLVLCGSSMGGAIALSVAH 131
                 55555555551114455555577888899766553226788888888526**************9988888888888888777776641111111346999************9986 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.18
   TIGR03056 214 ralpriavPvlliageedkavppdvs 239
                  a+  i+ P ll++++ed  v  + s
  MMETSP1061-20121228|7499_1 232 EAFDSITNPYLLLIADEDVVVKNEGS 257
                 567889************99987766 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.1   5.7e-08   2.1e-05      38     100 ..      63     133 ..      25     139 .. 0.77
   2 ?   -1.7   0.0      0.85   3.2e+02     183     208 ..     228     253 ..     193     268 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 5.7e-08
   TIGR02427  38 kdfrvlryDkrGHGlSdvpeg.pysiedladdvlallDalgi.....ek..aavcGlSlGGliaqaLaarr 100
                 + + v+++D +GHG+S+  +g   s +dl +d +a+l +++      ++   ++cG S+GG+ia++ a r 
  MMETSP1061-20121228|7499_1  63 AGYGVVAIDFPGHGKSEGLRGyLKSADDLIEDGIAMLQHAKSlysdaKNlpLVLCGSSMGGAIALSVAHRL 133
                 56889***********866651579************99754221113322579***********998775 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.85
   TIGR02427 183 adlrerleeiavPtlviaGdeDgstP 208
                 + ++e+ ++i+ P l++  deD++  
  MMETSP1061-20121228|7499_1 228 LKIMEAFDSITNPYLLLIADEDVVVK 253
                 34668889999999999999998765 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.2e-07   0.00012      22     182 ..      25     189 ..       8     251 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 3.2e-07
   TIGR03343  22 ihyneage.geavimlhgggpgaggwsnyyrniealvdagyrvilkdapgfnksdev.....vmde..qrglvnaravkglmdaldiekahlvgnsmggatalnfaleypdrlgklilmgpgglgksllaampmegikllfklyaepsletlkemlnvflfdqslitee 182
                  hy+  g   +a+++l+ g    g +       e l++agy v+  d pg  ks+ +       d+  + g+   +  k l    +     l g smgga al  a    +  +k     p+ + +sl+   pm +++       + +l+ l+ m+      +s  t+ 
  MMETSP1061-20121228|7499_1  25 HHYQAEGSsPKALVVLYHGFLAHGAYPTVRYGAEFLAEAGYGVVAIDFPGHGKSEGLrgylkSADDliEDGIAMLQHAKSLYSDAKNLPLVLCGSSMGGAIALSVAHRLNQMQEKD--KDPTFVAPSLILMAPMLKLN--VSSLEHTALQCLAYMVPTARLIPSKATDP 189
                 45655554157888888888888888888889999******************9875221111222123455556666776654444456799***********999888877774..68999999999999975554..44445555666666665555555555555 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   1.5e-05    0.0055       7      88 ..      38     135 ..      32     147 .. 0.65
   2 ?    2.7   0.0     0.047        18     171     216 ..     220     266 ..     195     291 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.5e-05
   TIGR01738   7 lvLihGWglnaev..fadlveeL.sahftlslvDLPGyGdsaelral.....slaevaeailaqapa........kaiwlGWsLGGLvalhlalthpd 88 
                 +vL hG+ ++++    +  +e L +a + + ++D PG+G+s+ lr       +l e   a+l++a +        + ++ G s+GG +al +a ++ +
  MMETSP1061-20121228|7499_1  38 VVLYHGFLAHGAYptVRYGAEFLaEAGYGVVAIDFPGHGKSEGLRGYlksadDLIEDGIAMLQHAKSlysdaknlPLVLCGSSMGGAIALSVAHRLNQ 135
                 6788888777763113444555525789*************998753221113433334555555322221111245788*************99877 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.047
   TIGR01738 171 gLellaev.DlRralqkisvPvLrlyGqkDalvPakvvealdklapq 216
                 +L+ ++++  + +a ++i+ P L+l+   D +v ++  e  +++ p 
  MMETSP1061-20121228|7499_1 220 ALTCVDTTlKIMEAFDSITNPYLLLIADEDVVVKNEGSEVFHQKSPS 266
                 4555544325678999*****************99999999988875 PP

>> TIGR03101  hydr2_PEP: exosortase A system-associated hydrolase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.4e-06   0.00051       8     123 ..      17     136 ..      12     203 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.4e-06
   TIGR03101   8 akGklfaiyr.ppeaesargvviylppfaEemNksRrmvalqakalaaeGfgvlqiDlyGtGDSaG..dfaeaswdvWkeDvaa...alrwlkekgaqavtLwglrlgalLalelaaelkek 123
                  +G+ +++ +  +e++s ++ v+  + f      +   v   a+ la++G+gv++iD  G G S+G   + +   d+ ++ +a+   a     ++   ++ L g  +g+++al++a++l++ 
  MMETSP1061-20121228|7499_1  17 IRGTNCCVHHyQAEGSSPKALVVLYHGFLA--HGAYPTVRYGAEFLAEAGYGVVAIDFPGHGKSEGlrGYLKSADDLIEDGIAMlqhAKSLYSDAKNLPLVLCGSSMGGAIALSVAHRLNQM 136
                 689999998724566667776666677753..345667889999**********************44344555566666654321134444555566788999999999999999988764 PP

>> TIGR01836  PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.64   2.4e+02     115     154 ..      89     130 ..      58     144 .. 0.61
   2 !   12.1   0.0   4.1e-05     0.015     283     350 .]     235     302 ..     224     302 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.64
   TIGR01836 115 dDyvngyik..kavdkikrtseldkisllGiCqGGtfsliya 154
                 dD +++ i   + ++ + +  +   + l G  +GG+++l  a
  MMETSP1061-20121228|7499_1  89 DDLIEDGIAmlQHAKSLYSDAKNLPLVLCGSSMGGAIALSVA 130
                 555555443113344444444555567889999999998765 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 4.1e-05
   TIGR01836 283 knikvpvLniyaekDhlvapdaskaLkdlvssedktelsfktGhigivvsgkaqkevlpaigkWleer 350
                 ++i+ p L ++a++D +v+ + s+++++  +s+dkt++++++ h  +   +     ++  i +Wl++r
  MMETSP1061-20121228|7499_1 235 DSITNPYLLLIADEDVVVKNEGSEVFHQKSPSQDKTKKNYPALHGLLCEPPPLCDTIKNDILDWLDKR 302
                 679999**************************************777777777778889999999987 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.2     0.013       4.7      14     102 ..      36     134 ..      24     140 .. 0.61
   2 ?    6.4   0.0    0.0029       1.1     188     236 ..     228     276 ..     209     299 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.013
   TIGR03611  14 evvvlssGLGGsgsywapq..levleq.efrvvvyDhrGtgrspeelaedysiaalaadvlelldal.......diekahvvGhalGgliglelalrkp 102
                   vvl  G+  +g+y +     e l++  + vv  D  G g+s +      s ++l +d  ++l+++       +   + + G ++Gg i+l +a+r  
  MMETSP1061-20121228|7499_1  36 ALVVLYHGFLAHGAYPTVRygAEFLAEaGYGVVAIDFPGHGKSEGLRGYLKSADDLIEDGIAMLQHAkslysdaKNLPLVLCGSSMGGAIALSVAHRLN 134
                 5677778888888885544113455441699999999999998876555555555554444444443111110033345678*************9865 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0029
   TIGR03611 188 fdvdarldriklpvlliaakDDlLvPytqsseLaekLPdaelklleyGg 236
                  ++  + d+i++p ll+ a +D++v    s+ +++k P  +++  +y +
  MMETSP1061-20121228|7499_1 228 LKIMEAFDSITNPYLLLIADEDVVVKNEGSEVFHQKSPSQDKTKKNYPA 276
                 45667889******************************99988877755 PP

>> TIGR03100  hydr1_PEP: exosortase A system-associated hydrolase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00011      0.04      40      97 ..      47     104 ..      14     135 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00011
   TIGR03100  40 vGshrqfvllaralAeaGlpvlRfDyrGmGDsegelstFedieaDiaAAidafleaap 97 
                  G++    + a  lAeaG+ v+  D  G G seg     + ++  i+  i+ +++a +
  MMETSP1061-20121228|7499_1  47 HGAYPTVRYGAEFLAEAGYGVVAIDFPGHGKSEGLRGYLKSADDLIEDGIAMLQHAKS 104
                 5777777778999*********************998888888889999988887654 PP

>> TIGR00976  /NonD: hydrolase CocE/NonD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00012     0.044      47      86 ..      58      99 ..      37     108 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00012
   TIGR00976 47 aefvaqGYavVvqDvRGrgaSeGeldlls.sde.aeDgydlv 86
                +++++ GY vV  D  G g+SeG +  l+ +d+ +eDg +++
  MMETSP1061-20121228|7499_1 58 EFLAEAGYGVVAIDFPGHGKSEGLRGYLKsADDlIEDGIAML 99
                456789******************999986555468887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1490.99
//
Query:       MMETSP1061-20121228|7500_1  [L=1974]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1974 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.85u 0.14s 00:00:00.99 Elapsed: 00:00:00.41
# Mc/sec: 6354.79
//
Query:       MMETSP1061-20121228|7502_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 2069.83
//
Query:       MMETSP1061-20121228|7503_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1913.84
//
Query:       MMETSP1061-20121228|7504_1  [L=1044]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-102  342.2   0.0    5.5e-71  237.7   0.0    2.0  2  TIGR00376 TIGR00376: putative DNA helicase
      1e-09   35.4   0.6    5.1e-09   33.1   0.2    1.9  2  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
    8.9e-07   25.0   0.8    1.3e-05   21.1   0.1    2.8  4  TIGR01448 recD_rel: helicase, RecD/TraA family
     0.0013   15.6   0.0     0.0023   14.8   0.0    1.3  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0047   14.0   0.1     0.0079   13.3   0.0    1.2  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
     0.0069   13.7   0.0      0.014   12.7   0.0    1.4  1  TIGR03877 thermo_KaiC_1: KaiC domain protein, Ph0284 family
  ------ inclusion threshold ------
      0.024   11.3   0.1      0.037   10.7   0.1    1.1  1  TIGR00959 ffh: signal recognition particle protein
      0.033   10.7   0.1      0.054   10.0   0.1    1.2  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
      0.044   10.8   0.1       0.17    8.9   0.0    1.8  2  TIGR01420 pilT_fam: twitching motility protein


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   1.3e-33   5.7e-31      33     294 ..     292     575 ..     278     578 .. 0.81
   2 !  237.7   0.0   1.2e-73   5.5e-71     336     629 ..     568     869 ..     563     878 .. 0.90

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 1.3e-33
   TIGR00376  33 lkgkirgellGkllvkfg.rrkave.teisvGDivlvsksnplksdlt......gvvvkvgkkfitvalees..vpkyslkkvridkyandvtfkRlkealrkltkkss....kllevilglekpskisevedlqaid........knLnesqkeAvkfAvsskdlaliHGPpGtGktrtlvElirqevkkgk.rvLvtaesniavDnllErlakldlkivRlGHPaRllks..lkrhsLdali..enhekyqkvkdirekidelieerekklkpskqkrrglsdiklL 294
                 + ++    l Gk++ +f   r ave ++i vGD   ++ +++ +   +      g v  +++  +++ l +s  vp+y  +++ ++ +     f R+++al+ ++   +     + +++lg  +++++  + +l a +        ++Lnesq eAv + ++   + li GPpGtGkt t   l+  + k++  +vLvta+sn+avD+l E++a + l++vRl   +R   s  + +  L +++  +  ++ +k++ ++++i el e+ +kk   ++ +r ++ + ++L
  MMETSP1061-20121228|7504_1 292 ISVRWEKSLAGKNVATFTfHRLAVEqSRIMVGDELRLKLGDGAQYLYSkpwegiGYVKGISDGEVELELRTSgnVPDYIHDDYIVEYIWKSTSFDRMQNALKTFAIDDTsvtgYIYHKLLGHPVEEQVIATAKLPATEkdyavpglPSLNESQIEAVATVLER-PMSLIQGPPGTGKTVTSATLVYHLTKQNMgQVLVTAPSNVAVDQLTEKIAATGLRVVRLASKTREASSssVDHLCLHVMVpqAAGDEFNKLQRLKNEIGELSERDQKK---YRSLR-NRTEREIL 575
                 555566677899999998888888625799********888777543222222278888899999999999899******************************98777344466788899999999999999998888899*9*************987766.***************************************************************97654114444677776223468999************9984444...44433.44555555 PP

  == domain 2    score: 237.7 bits;  conditional E-value: 1.2e-73
   TIGR00376 336 erivdeileesdvvlstnssaaleilk..eFDvvviDEasqAlepsvliPlvkar.klilAGDhkqLPPtvlsed..aeeLektLferlikkypersklLnvqYRmnekimefpskefYngklkAdesvanillrdlvkeeateveedledkiPllfidtsglelleakekdstskynegEvelvkeiikeLvklgvpeeeigvisPYdaqvdllrkll......eekki.diEvssvDGFqGREkeviilslvRsnrkgevGFLkdlRRlnvaltRarRklivigdsevlkankvlkrlieyvkk 629
                 +r   eil+ +dv+  t   aa   lk  +F  v+iDEa+qA+e++ liP++++  ++++ GDh qL P v+ +    ++L ++Lferl+ + + r   L+vqYRm++++ efps++fY+g l+   + a++ l+ l++ + +e       ++P+ f+ + g+e      +  ts+ n+ E++ v++++++L++lgv   +igvi+PYd q +++++ +       +     iEv svD FqGREk+ i++  vRs + + +GFL d RRlnvaltRar  +i+ig+ +vl++n+ ++ l  ++k+
  MMETSP1061-20121228|7504_1 568 NRTEREILQAADVICCTCVGAADPRLKnfRFRQVLIDEATQAIEAEALIPIANGAkQVVFVGDHCQLGPVVMCKAaaKAGLTQSLFERLVLI-GTRPIRLQVQYRMHPALSEFPSNMFYEGSLQNGVTEADRQLLSLPGFSGKEDFAWPVPSKPMFFYSVTGMEE---ISASGTSYLNRTEASYVEKVVTHLLRLGVTPSQIGVITPYDGQKKYVSEHMrrsgalAHTLYeAIEVASVDAFQGREKDFILVTCVRSSETQGIGFLSDPRRLNVALTRARLGVILIGNPRVLSKNALWAALLLHFKE 869
                 4667799***********9999999888999********************986527899************98877789*********965.7787779***************************************99999555566679*********999...567889*************************************988877664444434444326*******************************************************************9999987 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.2   1.1e-11   5.1e-09     148     220 ..     441     507 ..     409     548 .. 0.79
   2 ?   -0.2   0.0      0.13        59     287     304 ..     620     637 ..     600     645 .. 0.78

  Alignments for each domain:
  == domain 1    score: 33.1 bits;  conditional E-value: 1.1e-11
   TIGR01447 148 eeenlqkvavalalksnfslitGGPGTGKTttvarlllalikqskaqgklrialaaPTGkAaarLteslkkav 220
                 +e++    ava++l++ +sli G PGTGKT t a l+  l kq + q    + ++aP   A  +Lte + +  
  MMETSP1061-20121228|7504_1 441 NESQI--EAVATVLERPMSLIQGPPGTGKTVTSATLVYHLTKQNMGQ----VLVTAPSNVAVDQLTEKIAATG 507
                 33332..59**********************************9995....****************998754 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.13
   TIGR01447 287 kketkLIllGDknQLasv 304
                 ++  + +++GD+ QL++v
  MMETSP1061-20121228|7504_1 620 NGAKQVVFVGDHCQLGPV 637
                 455679***********9 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   2.9e-08   1.3e-05     323     407 ..     439     522 ..     409     532 .. 0.87
   2 ?   -2.5   0.0      0.41   1.8e+02     437     458 ..     616     637 ..     593     643 .. 0.66
   3 ?   -1.4   0.0       0.2        91     526     553 ..     745     772 ..     732     778 .. 0.85
   4 ?   -0.3   0.0      0.09        41     682     700 ..     835     853 ..     798     858 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 2.9e-08
   TIGR01448 323 elseeqkealktaiqdkvviltGGPGtGKtTvtkaiielaeelegllevvLaAPTGrAakrlaEvTGkeaaTiHrllgygsdeks 407
                 +l+e+q ea+ t+ +  + ++ G PGtGKt +  +++ +  + + + +v+++AP   A  +l+E    + + + rl  ++ + +s
  MMETSP1061-20121228|7504_1 439 SLNESQIEAVATVLERPMSLIQGPPGTGKTVTSATLVYHLTKQN-MGQVLVTAPSNVAVDQLTEKIAATGLRVVRLASKTREASS 522
                 6899*************************999888888888877.899****************988888888888777776555 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.41
   TIGR01448 437 laavpdda.rlllvGDadqLPsV 458
                 +  ++++a ++++vGD+ qL +V
  MMETSP1061-20121228|7504_1 616 I-PIANGAkQVVFVGDHCQLGPV 637
                 3.344444279*********888 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.2
   TIGR01448 526 aalvekivkaakkkGipgkdiqVlaPmk 553
                 a  vek+v+  ++ G++  +i V++P  
  MMETSP1061-20121228|7504_1 745 ASYVEKVVTHLLRLGVTPSQIGVITPYD 772
                 6789**********************65 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 0.09
   TIGR01448 682 YTalTRakkklvlvGskeA 700
                   alTRa+  ++l+G+++ 
  MMETSP1061-20121228|7504_1 835 NVALTRARLGVILIGNPRV 853
                 579************9875 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     5e-06    0.0023      33      89 ..     463     518 ..     434     533 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5e-06
   TIGR04095  33 tGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaekFglepilayesvs 89 
                  GtGkt+t  +lv++l++++  + v+v++P +  v+q ++ +++ gl+ ++ +++++
  MMETSP1061-20121228|7504_1 463 PGTGKTVTSATLVYHLTKQNMGQ-VLVTAPSNVAVDQLTEKIAATGLRVVRLASKTR 518
                 69**************9996665.689*********************999877665 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.7e-05    0.0079      78     147 ..     453     520 ..     385     528 .. 0.72

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-05
   TIGR00064  78 kpnvillvGvNGvGKTttiaKlakllkkegkkvllaAgDTFrAaAieQleewakrlgvkvikqkegadpa 147
                 +  + l+ G  G+GKT t a l   l+k++   +l+ +      A++Ql e +  +g +v++  +++  a
  MMETSP1061-20121228|7504_1 453 ERPMSLIQGPPGTGKTVTSATLVYHLTKQNMGQVLVTAP--SNVAVDQLTEKIAATGLRVVRLASKTREA 520
                 4446789999******************99987777765..5689************9999866553333 PP

>> TIGR03877  thermo_KaiC_1: KaiC domain protein, Ph0284 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0     3e-05     0.014      18      58 ..     450     490 ..     433     518 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3e-05
   TIGR03877  18 gipernvvllsggpgtgksilsqqflynglqkgepgvyval 58 
                  + er + l+ g pgtgk++ s   +y+  +++ + v+v+ 
  MMETSP1061-20121228|7504_1 450 TVLERPMSLIQGPPGTGKTVTSATLVYHLTKQNMGQVLVTA 490
                 4678999*********************9999999999975 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1     8e-05     0.037     101     164 ..     456     516 ..     437     532 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 8e-05
   TIGR00959 101 villvGLqGsGKtttaaKlakklkkkekkkvllvalDlyRpaAveqLkvlgeqvgvpvfekeke 164
                 + l+ G  G+GKt t+a l ++l+k++  +vl+ a       Av+qL+     +g  v++  ++
  MMETSP1061-20121228|7504_1 456 MSLIQGPPGTGKTVTSATLVYHLTKQNMGQVLVTAPS---NVAVDQLTEKIAATGLRVVRLASK 516
                 56889999**************999898888888764...579999999888888888876654 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00012     0.054     255     324 ..     454     519 ..     408     528 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00012
   TIGR00643 255 vpmnRLlqGdVGsGKTvVavlallavi.esGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkk 324
                 +pm  L+qG  G+GKTv  +  ++++  ++  qv++ aP ++   Q  ek++      g++v  L++++++
  MMETSP1061-20121228|7504_1 454 RPM-SLIQGPPGTGKTVTSATLVYHLTkQNMGQVLVTAPSNVAVDQLTEKIAA----TGLRVVRLASKTRE 519
                 344.59***********977666666515668***********9999998764....35555555555555 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.5   2.3e+02      18      60 ..     264     306 ..     258     321 .. 0.83
   2 ?    8.9   0.0   0.00037      0.17     107     155 ..     439     487 ..     429     491 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.5
   TIGR01420  18 hlkaglppavrvdgklerieeepldaeevqkllkeileekqre 60 
                 h +  l+p v+++ +++r+ +e l++e++    ++ l  k+ +
  MMETSP1061-20121228|7504_1 264 HYQNVLAPLVKIEADYDRQMKESLTEEHISVRWEKSLAGKNVA 306
                 7778899********************9988777777666655 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00037
   TIGR01420 107 elglpevlkelaekkrGlilvtGptGsGKsttlAslidyinkekakhil 155
                 +l+  ++    +  +r + l+ Gp G GK+ t A+l+ ++ k++  ++l
  MMETSP1061-20121228|7504_1 439 SLNESQIEAVATVLERPMSLIQGPPGTGKTVTSATLVYHLTKQNMGQVL 487
                 555554433333445667789*******************999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1044 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      195  (0.0475378); expected 82.0 (0.02)
Passed Vit filter:                        49  (0.0119454); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.77u 0.18s 00:00:00.95 Elapsed: 00:00:00.65
# Mc/sec: 2119.95
//
Query:       MMETSP1061-20121228|7501_1  [L=812]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 3152.21
//
Query:       MMETSP1061-20121228|7505_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 2087.83
//
Query:       MMETSP1061-20121228|7506_1  [L=913]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (913 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 3256.92
//
Query:       MMETSP1061-20121228|7507_1  [L=1042]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-12   45.6   0.0    2.6e-12   44.5   0.0    1.5  1  TIGR00027 mthyl_TIGR00027: putative methyltransferase, TIGR00027 family
    1.3e-06   25.3   0.0    2.1e-06   24.7   0.0    1.2  1  TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
    1.3e-05   21.9   0.0    2.5e-05   21.0   0.0    1.4  1  TIGR03228 anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit
    1.5e-05   22.9   0.0    7.8e-05   20.6   0.0    2.0  2  TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
    4.7e-05   21.2   0.0     0.0001   20.1   0.0    1.5  1  TIGR02377 MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily


Domain annotation for each model (and alignments):
>> TIGR00027  mthyl_TIGR00027: putative methyltransferase, TIGR00027 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   3.2e-15   2.6e-12      22     127 ..      80     194 ..      68     245 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 3.2e-15
   TIGR00027  22 vrDplAaaflsaagrlrldskleaeaeaeekelggladfvavRtrffDdflle......av.aagvr...qvViLgAGlDtRAyRldwpe.gtrvF.EvDqpevlefKekvlkelgae 127
                 ++D +A+++l++++r     + e+ a+  +  l ++a+++ +Rt+f+D+ l++      ++ a+g +    vV+ gAG+DtRA R + ++ g++ F EvD+pev+e K+k  ++ +++
  MMETSP1061-20121228|7507_1  80 IQDSVAQELLPKTTR--GLVTSEWGASLLDPIL-KFAEWIQARTEFIDEALDNflsspaCTdAEGTDlecNVVLFGAGYDTRALRYRHRHsGMINFvEVDLPEVVEGKSKLYQQFRRT 194
                 79************5..6788889999999997.9*************99875222222222455555557***************99987776666************998877654 PP

>> TIGR03229  benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   2.6e-09   2.1e-06      51     114 ..     500     562 ..     490     566 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 2.6e-09
   TIGR03229  51 kndyyttklgrqpiliarnkdgelnalinacshrgamlcrhkrgnkatytcpfhgwtfnnsgkl 114
                 +++ ++t+l  +p++i r+ ++el a+ + c hr a l+    +n   + c +hgw f ++gk 
  MMETSP1061-20121228|7507_1 500 QQQPFATRLWGEPLVIYRDSKDELVAMADVCPHRSAPLSMGYVEND-ELVCRYHGWRFGDDGKC 562
                 556688899999***************************9988886.689************96 PP

>> TIGR03228  anthran_1_2_A: anthranilate 1,2-dioxygenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.1e-08   2.5e-05      57     115 ..     506     563 ..     493     568 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 3.1e-08
   TIGR03228  57 lragrqplivtrdgegelhalvnacehrgatltrvgkgnqsvftcpfhawcyksdgrlv 115
                  r+  +pl++ rd + el a+ + c hr a l   g  ++  + c +h w + +dg+ v
  MMETSP1061-20121228|7507_1 506 TRLWGEPLVIYRDSKDELVAMADVCPHRSAPLSM-GYVENDELVCRYHGWRFGDDGKCV 563
                 456668*************************975.666677899************987 PP

>> TIGR02378  nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   9.5e-08   7.8e-05      24      83 ..     511     564 ..     498     571 .. 0.90
   2 ?   -1.6   0.0      0.79   6.5e+02      41      63 ..     632     654 ..     628     659 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 9.5e-08
   TIGR02378  24 eqlAiFrvkkkevyAiqnlcPhkrafvlsrGlvgdaegelvvacPlhkrkfeLedGkcle 83 
                 e l i+r +k+e+ A+ ++cPh+ +++ls G v+++e     +c +h ++f  +dGkc+ 
  MMETSP1061-20121228|7507_1 511 EPLVIYRDSKDELVAMADVCPHR-SAPLSMGYVENDE----LVCRYHGWRFG-DDGKCVG 564
                 5688******************9.99***********....99********7.8999975 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.79
   TIGR02378  41 nlcPhkrafvlsrGlvgdaegel 63 
                   c+ +ra v  +Glv+  +g++
  MMETSP1061-20121228|7507_1 632 SNCGNHRAVVEHEGLVYVWRGNV 654
                 5699999*********9777765 PP

>> TIGR02377  MocE_fam_FeS: Rieske [2Fe-2S] domain protein, MocE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.2e-07    0.0001      23      69 ..     510     556 ..     499     580 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.2e-07
   TIGR02377  23 grtfaiyrsaddeyyatdglcthekvhladglvedtevecpkhagaf 69 
                 g    iyr + de+ a +++c h  + l+ g+ve++e+ c  h  +f
  MMETSP1061-20121228|7507_1 510 GEPLVIYRDSKDELVAMADVCPHRSAPLSMGYVENDELVCRYHGWRF 556
                 55678************************************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1042 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.50
# Mc/sec: 2750.65
//
Query:       MMETSP1061-20121228|7509_1  [L=944]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-19   66.5   0.0    1.5e-15   54.8   0.0    2.2  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    1.5e-06   25.1   0.0    2.5e-06   24.4   0.0    1.2  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    4.9e-05   20.7   0.0    0.00027   18.3   0.0    1.9  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
  ------ inclusion threshold ------
       0.02   11.4   0.1          1    5.8   0.0    2.3  2  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
      0.068   10.0   0.7        1.6    5.5   0.1    2.2  2  TIGR00692 tdh: L-threonine 3-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   1.9e-18   1.5e-15      28     175 ..     609     770 ..     595     781 .. 0.86
   2 !    9.3   0.0   0.00013      0.11     281     322 ..     889     930 ..     878     932 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 1.9e-18
   TIGR02824  28 gevlikvaAaGvNrpDvlQraGkY..ppppgaseilGLEvaGevvavgeevsk...fkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTvwsnlf..elaklka......getvLihgg.asGiGttaiqlakalgakvlvtagsde 175
                 ++v i+v+A+ v   D++ r+G +  +  p   + +G+++ G+v ++ ++v+k   +k+ + v++Lv+ Gg a +++++ +q+++v ++l+ ++ A lpE ++ +++ l   +++ l+       g++vLi g  +  +G + i la ++ga  + ++++++
  MMETSP1061-20121228|7509_1 609 EDVVIQVEASTVSETDCIIRQGLWwrNCQPSFPNTPGIDMVGKVHSIKQKVAKaydLKQMETVVSLVKWGGNARFMTIHPNQLVKVHANLDPAQVACLPEFYLSAFQVLHmgQVGSLRYtdnslqGKSVLILGCmTNNMGKAMIELALHAGAANIYATSKKK 770
                 5799******************98445789999******************999889999**********************************************9875225677765677777******9974789*********999976665555544 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00013
   TIGR02824 281 ekvwpllaegkvrpvidkvfpledaakAhellessehiGKiv 322
                 +++  ll+++k++p +   ++l++++kAhel+e+++  G +v
  MMETSP1061-20121228|7509_1 889 SHLLQLLEKKKINPEVLDRISLKKVSKAHELIETKRLPGFLV 930
                 578899***************************998877665 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   3.1e-09   2.5e-06      26     189 ..     608     778 ..     603     785 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 3.1e-09
   TIGR02823  26 egdvlikvaysslNyKDalaitgk..gkvvreyPlvpGiDlaGtvvesedprfkeGdeVivtgydlgvshaGGyseyarvkadwvvplPeglslkeamilGtAGfTAaLsvealekag......ltpeegevlVtGA.tGgVgslavalLsklGyevvavtgkkeeeeylkel 189
                  +dv+i+v+ s++   D ++ +g   ++   ++P +pGiD+ G+v + +++  k+ d    +   ++  ++GG ++++ ++ +++v++ ++l+  + + l    + A + v ++ + g       + + ++vl+ G  t   g   ++l  ++G   + +t+kk++ ++l + 
  MMETSP1061-20121228|7509_1 608 GEDVVIQVEASTVSETDCIIRQGLwwRNCQPSFPNTPGIDMVGKVHSIKQKVAKAYDL-KQMETVVSLVKWGGNARFMTIHPNQLVKVHANLDPAQVACLPEFYLSA-FQVLHMGQVGslrytdNSLQGKSVLILGCmTNNMGKAMIELALHAGAANIYATSKKKHWKTLISS 778
                 589*****************99853389999**************9888777776665.4556679999*************************9999887654444.44444444443221114455567888875467788888888888888888888888777777655 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.3e-07   0.00027      28     185 ..     607     771 ..     580     789 .. 0.83
   2 ?   -0.2   0.0      0.14   1.2e+02     305     334 ..     903     932 ..     882     934 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.3e-07
   TIGR02817  28 kgrdllvevkavsvnPvdtkvrkkvapeaee...lkilGwdaaGvvkavGeevtlfkvGdevfyaGalerpGsnaefhlvderivgkkPkslsfaeaaalPltaitawellf....drlkieedvagekralliiGa.aGGvgsiliqlarqlteltviatasrae 185
                  g+d++++v+a +v   d  +r+    ++ +   +   G d +G v+++ ++v+      ++    +l + G na f  +      k   +l+ a+ a lP   ++a+++l       l+ + d++ + +++li+G+ +  +g  +i la +   +++ at+ +  
  MMETSP1061-20121228|7509_1 607 VGEDVVIQVEASTVSETDCIIRQGLWWRNCQpsfPNTPGIDMVGKVHSIKQKVAKAYDLKQMETVVSLVKWGGNARFMTIHPNQLVKVHANLDPAQVACLPEFYLSAFQVLHmgqvGSLRYT-DNSLQGKSVLILGCmTNNMGKAMIELALHAGAANIYATSKKKH 771
                 489********************986655441116789***************9988888999999**************9988889999********************963222345655.5567889999999735689******************987654 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.14
   TIGR02817 305 etlGainaanlkrahaliesgkarGkivle 334
                 e+l  i  +++ +ah+lie+ +  G +v e
  MMETSP1061-20121228|7509_1 903 EVLDRISLKKVSKAHELIETKRLPGFLVCE 932
                 6677899999**********9999988876 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0012         1     139     232 ..     677     777 ..     673     791 .. 0.84
   2 ?    2.8   0.0    0.0099       8.1     341     381 ..     887     927 ..     883     931 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0012
   TIGR01751 139 yGslaefalvedsqllPkPkhLtWeeaacllLtaatayrqLvgkkpaelk......pGdavLiWGa.aGGLGsyaiqlaraaGgipvavvssedkaeiare 232
                 +G+ a+f  ++ +ql+   + L   + acl      a++ L   +  +l+      +G++vLi G  +  +G   i la  aG+  +   s++++ +   +
  MMETSP1061-20121228|7509_1 677 WGGNARFMTIHPNQLVKVHANLDPAQVACLPEFYLSAFQVLHMGQVGSLRytdnslQGKSVLILGCmTNNMGKAMIELALHAGAANIYATSKKKHWKTLIS 777
                 79999*************************999999**9998777666654444448999*****83568*****************99998877666555 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0099
   TIGR01751 341 easevnrlvakgrvdPtLskvysleeigkaaqkllanelqG 381
                 + s++++l++k++++P +    sl++++ka++ +++++l G
  MMETSP1061-20121228|7509_1 887 DLSHLLQLLEKKKINPEVLDRISLKKVSKAHELIETKRLPG 927
                 567889****************************9998877 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.1     0.002       1.6      24      75 ..     609     660 ..     601     676 .. 0.88
   2 ?    2.7   0.0     0.014        12     158     200 ..     730     774 ..     678     781 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.002
   TIGR00692  24 nevlikvkatsicGtdvhiynwdewaqkrikvpqvlGhevaGevvgiGeeve 75 
                 ++v+i+v+a+++  td  i +   w + +   p   G +++G+v  i ++v 
  MMETSP1061-20121228|7509_1 609 EDVVIQVEASTVSETDCIIRQGLWWRNCQPSFPNTPGIDMVGKVHSIKQKVA 660
                 69******************99999999999****************99985 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.014
   TIGR00692 158 sdlaGesvlvsGa..GpiGllavavakaaGasqvivsdkneyrle 200
                  +l G+svl+ G+    +G   + +a +aGa ++ ++ k+++ + 
  MMETSP1061-20121228|7509_1 730 NSLQGKSVLILGCmtNNMGKAMIELALHAGAANIYATSKKKHWKT 774
                 5689********943469999999**********99988776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 3367.51
//
Query:       MMETSP1061-20121228|7510_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1428.93
//
Query:       MMETSP1061-20121228|7508_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-96  319.5   1.1    6.9e-96  318.7   0.8    1.3  1  TIGR00116 tsf: translation elongation factor Ts


Domain annotation for each model (and alignments):
>> TIGR00116  tsf: translation elongation factor Ts
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.7   0.8   1.7e-99   6.9e-96       3     291 ..     201     487 ..     200     489 .. 0.97

  Alignments for each domain:
  == domain 1    score: 318.7 bits;  conditional E-value: 1.7e-99
   TIGR00116   3 aisaqlvkeLRektdAgmmdCkkALveangDlekAidllRekGiakaakkadrvAaeGvvllkvdnd.kavlveinsetDFvAknegfkelanklleelkankittveelkkselenkeveeklaslvakigEnilvrriavleaksseviksYlHanariGvlveikgkseeelakdlAmHvAAvkPqfldqddvsaevvkkereiekdqaelegkPekilekiveGrlkkflaeisLleqkfvmddkktvkqllkeknakvtefvrfevGeGiekkaedfaeevaaqv 291
                 ai+++ +k LR+ t+AgmmdCkkAL+e++gD e A ++lR+kG+a+a kka rvAaeG +++ + +d kav+ve+n+etDFv k+  f ++ n+++ +++a    +ve l+ +e++ +++e   ++lv+kigEni+vrr+     + s ++ +Y+H+   iGvlve++g    el  d+AmHvAA++P f   +dv ++v+++e+ i ++qa ++gkP +i+ek+veGr++k+l++ +L+ q++v+d ++tv+qll+++ ak++ f r+ vGeGiekk  dfa+evaa+ 
  MMETSP1061-20121228|7508_1 201 AITPKTIKALRDLTGAGMMDCKKALTESGGDQEVAAEFLRKKGLAQADKKATRVAAEGKIAVSTGSDgKAVMVEVNCETDFVGKDSTFLAYCNRVAGAAAAMGSGSVEDLMGQEVDGESLEATRQALVSKIGENIQVRRMEGR-GDGSTTVGGYVHM-GTIGVLVELEG-GSAELCTDVAMHVAAMNPPFATAEDVPQDVLDNEKRILTEQALESGKPAEIVEKMVEGRIRKYLEDKCLVSQTYVKDGDITVQQLLEKNGAKMIGFSRLVVGEGIEKKVDDFAAEVAAMA 487
                 6999**********************************************************999888***********************************************************************8765.56677*******5.67*********.67799****************************************************************************************************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       319  (0.0777669); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 1701.96
//
Query:       MMETSP1061-20121228|7514_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 930.87
//
Query:       MMETSP1061-20121228|7511_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-79  263.1  14.4    2.5e-30  103.4   0.0    4.2  4  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    8.1e-18   62.5   0.6    3.2e-17   60.5   0.3    2.0  2  TIGR00092 TIGR00092: GTP-binding protein YchF
    1.5e-12   45.0   0.0    6.1e-06   23.2   0.0    2.2  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
    1.2e-11   42.1   0.2    3.9e-07   27.2   0.1    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    9.1e-07   26.3   0.0      0.011   12.9   0.0    2.2  2  TIGR00436 era: GTP-binding protein Era
    1.4e-06   25.9   0.0      0.018   12.6   0.0    2.2  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    5.9e-06   23.7   0.8      0.041   11.1   0.0    2.5  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    9.1e-06   23.4   0.0    7.8e-05   20.3   0.0    2.3  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00029   17.9   0.1      0.028   11.4   0.0    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
     0.0005   16.8   0.5        0.3    7.7   0.0    2.5  3  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
     0.0006   16.8   0.0       0.31    7.9   0.0    2.1  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0017   14.9   2.7      0.012   12.1   0.0    2.1  2  TIGR00437 feoB: ferrous iron transport protein B
     0.0023   14.6   0.1     0.0033   14.0   0.1    1.1  1  TIGR00487 IF-2: translation initiation factor IF-2
     0.0033   14.4   2.1       0.37    7.7   0.6    2.2  2  TIGR00750 lao: LAO/AO transport system ATPase


Domain annotation for each model (and alignments):
>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   3.7   4.8e-16   1.4e-13       1      73 [.      89     161 ..      89     181 .. 0.85
   2 !   15.8   0.0   3.9e-06    0.0012      62      97 ..     190     225 ..     175     247 .. 0.88
   3 !   99.0   0.2     2e-31   5.8e-29     107     198 ..     261     350 ..     250     359 .. 0.92
   4 !  103.4   0.0   8.6e-33   2.5e-30     205     327 ..     384     514 ..     378     516 .. 0.82

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 4.8e-16
   TIGR02729   1 fvDevkievkaGkGGnGvvsfrrekyvpkGGPdGGdGGkGGsvileadenlntLldfrykkklkaenGenGkg 73 
                 f+De++i+v+aG+GG+G  +f++ k   +G PdGG+GG GG+v+l+ d +lntL  ++ ++      G  G+ 
  MMETSP1061-20121228|7511_1  89 FFDEATIYVRAGSGGQGSSTFKKAKKGANGIPDGGSGGLGGNVVLKLDPSLNTLAGLSKRTLRPNAFGGGGAA 161
                 89*****************************************************998777666555555543 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 3.9e-06
   TIGR02729  62 klkaenGenGkgknrsGkkgedlvikvPvGtvvlde 97 
                 +++a++G +G +   +Gk ged+ + vP Gtvv  e
  MMETSP1061-20121228|7511_1 190 SFRAQDGMTGGRMYDNGKGGEDCEVLVPPGTVVQLE 225
                 689*****************************9765 PP

  == domain 3    score: 99.0 bits;  conditional E-value: 2e-31
   TIGR02729 107 teegqkllvakgGkgGlGNakfksstnraPrkaekGeegeerelkleLklladvglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGv 198
                 + e+ +l+vakgG+gG G a++k +++ a r+  +G  ge+ +l+l Lk++ad++lvG+pnaGkSt+l+av++akp+iadYpFtT+vPnLG 
  MMETSP1061-20121228|7511_1 261 SYENPTLIVAKGGRGGEGTATLKGKKKGATRRGPEG--GERCRLRLTLKIVADIALVGVPNAGKSTFLAAVTRAKPRIADYPFTTVVPNLGT 350
                 5677889*********************99988777..8999*************************************************7 PP

  == domain 4    score: 103.4 bits;  conditional E-value: 8.6e-33
   TIGR02729 205 ksfvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyse.eLaekpelvvlnkidllee.ee....leellkelkeel.....ekkvlaisaltkegleellkkllel 327
                 + +vl D+Pgli gaseg+gLG+ FL+Hier+rv+lhl+d++ +   dpv dl ++++eLk+y + +La+kp++v+lnkid + + +e    ++e++kel++++     +++++ +sa +k+g+++l+++++++
  MMETSP1061-20121228|7511_1 384 SGLVLCDVPGLIAGASEGVGLGHAFLRHIERCRVILHLVDATGD---DPVGDLAMVNDELKRYGSgSLANKPQVVILNKIDSVFDeDEeeeiINEKKKELADRMkeemgHTRLMWVSAKEKDGVDDLMTRMASY 514
                 6789**************************************99...9***************7637**************8754233011134444445444455557788999*************999876 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.3   1.1e-19   3.2e-17       7     136 ..     314     443 ..     309     502 .. 0.74
   2 ?   -0.3   0.2      0.33        97     197     259 ..     448     515 ..     430     531 .. 0.62

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 1.1e-19
   TIGR00092   7 ivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpderld..kLaei.....vksekv....vpttlefvDiaGLvkGaskGeGLGnkfLaniRevdaivhvvRcfedddivhvegkvdPvrDlevineeLila 136
                 +vG+pn Gkst+  a+t+ak   +a+yPf+t+ pn g+ + p+++ d  + ++       +s++       + l + D+ GL++Gas+G GLG +fL +i     i+h v +  d          dPv Dl ++n+eL   
  MMETSP1061-20121228|7511_1 314 LVGVPNAGKSTFLAAVTRAKP-RIADYPFTTVVPNLGTWIPPQDKKDgnHYTNFnkdgtKQSDRAnraaGSSGLVLCDVPGLIAGASEGVGLGHAFLRHIERCRVILHLVDATGD----------DPVGDLAMVNDELKRY 443
                 7*******************9.***************98888776652223333111113344441111345699*********************************9987665..........6777777777777655 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.33
   TIGR00092 197 LtakPilivanvseddlvnkenkll..ekvkeivaefkeg...dkvvlvsaeleselselkeeereef 259
                 L  kP ++++n  ++ + + e++++  ek+ke+++++ke+    +++ vsa+  + + +l +   ++ 
  MMETSP1061-20121228|7511_1 448 LANKPQVVILNKIDSVFDEDEEEEIinEKKKELADRMKEEmghTRLMWVSAKEKDGVDDLMTRMASYV 515
                 78899999999888877766555431155666666666542214566666666555555555555555 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.5e-07   7.4e-05     188     229 ..     308     349 ..     296     358 .. 0.85
   2 !   23.2   0.0   2.1e-08   6.1e-06     261     349 ..     407     513 ..     376     515 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.5e-07
   TIGR03156 188 evptvalvGYTNaGKstllnaltkaevlaedklFATLdpttr 229
                  v  +alvG  NaGKst+l a+t+a+   +d  F+T  p + 
  MMETSP1061-20121228|7511_1 308 IVADIALVGVPNAGKSTFLAAVTRAKPRIADYPFTTVVPNLG 349
                 4778********************************988765 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 2.1e-08
   TIGR03156 261 aTLeevaeadlllhvvDasdeeaeeqieaveevLeelga...eeipvllvlNkidkle.....eeeleeleekkee.............avlvsAkkgegleeLleaiee 349
                 a L  +++  ++lh+vDa+ ++    ++ v++ L+  g    +++p++++lNkid +      e e+ ++++k  e              ++vsAk+++g+++L++++++
  MMETSP1061-20121228|7511_1 407 AFLRHIERCRVILHLVDATGDDPVGDLAMVNDELKRYGSgslANKPQVVILNKIDSVFdedeeE-EIINEKKK--EladrmkeemghtrLMWVSAKEKDGVDDLMTRMAS 513
                 6678888999*************************9986111567**********997555531.22222222..1222344455555589**************99876 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.1e-05    0.0091     176     199 ..     310     333 ..     244     344 .. 0.73
   2 !   27.2   0.1   1.3e-09   3.9e-07     252     351 ..     409     520 ..     402     540 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.1e-05
   TIGR03594 176 ikiaiiGrpNvGKStLvNallgee 199
                   ia++G pN+GKSt++ a+++ +
  MMETSP1061-20121228|7511_1 310 ADIALVGVPNAGKSTFLAAVTRAK 333
                 568888888888888887776654 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 1.3e-09
   TIGR03594 252 lkaieradvvllvlDategiseqDlkiaglile.......egkalvivvNKwDlv....kdekeleelkkeleeklk.flkfapivfiSAltgkgveklleaikevyeslsk 351
                 l+ ier+ v+l ++Dat +    Dl +++  l+       ++k+ v+++NK+D v    ++e+ ++e kkel +++k  + +++++ +SA+++ gv++l++ + + + ++++
  MMETSP1061-20121228|7511_1 409 LRHIERCRVILHLVDATGDDPVGDLAMVNDELKrygsgslANKPQVVILNKIDSVfdedEEEEIINEKKKELADRMKeEMGHTRLMWVSAKEKDGVDDLMTRMASYVGKMKE 520
                 6889************976666666555443331121222789************853222333456667777666526899******************999887766655 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.8e-05     0.011       3      27 ..     312     336 ..     310     355 .. 0.85
   2 !   11.3   0.0   0.00012     0.035      43     154 ..     379     506 ..     364     528 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.8e-05
   TIGR00436   3 vailGrpnvGKSTLlNkllgqkisi 27 
                 +a++G pn+GKST+l  ++ +k  i
  MMETSP1061-20121228|7511_1 312 IALVGVPNAGKSTFLAAVTRAKPRI 336
                 89***************99998776 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00012
   TIGR00436  43 ltegasqiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknke.d.ellleklqk......lkapvvlalnkldnkekdklleli.dkeasllefk........eiveisalkgenvee 154
                    g+s  ++ D+PGl     + +  l ++  + ++   +il +vd++      d  ++ ++l++      +++p+v++lnk+d  + ++++e+i +++++ l  +        + + +sa++++ v+ 
  MMETSP1061-20121228|7511_1 379 RAAGSSGLVLCDVPGLIAGA-SEGVGLGHAFLRHIERCRVILHLVDATGDDPVgDlAMVNDELKRygsgslANKPQVVILNKIDSVFDEDEEEEIiNEKKKELADRmkeemghtRLMWVSAKEKDGVDD 506
                 55667778999999998765.456667888899999**********9877766542789999*984444435789***********6655555441444333221112333344455556666655555 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   0.00018     0.053      18      42 ..     309     333 ..     302     346 .. 0.86
   2 !   12.6   0.0     6e-05     0.018      94     185 ..     408     511 ..     401     512 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00018
   TIGR03598  18 lpeiafaGrSNvGKSsliNaLtnrk 42 
                 +++ia++G  N+GKS+++ a+t+ k
  MMETSP1061-20121228|7511_1 309 VADIALVGVPNAGKSTFLAAVTRAK 333
                 679******************9987 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 6e-05
   TIGR03598  94 YLekrenLkgvvllvDirhelkelDlellellkea.......kipvlvvltKaDklkkse.....lkkalkkvkkelkkeeekvevllfSslkkegieelkael 185
                 +L++ e+ + ++ lvD+  +    Dl +++   ++       + p +v+l+K+D +  ++     +++++k++++++k+e  +++++++S+++k g+++l++++
  MMETSP1061-20121228|7511_1 408 FLRHIERCRVILHLVDATGDDPVGDLAMVNDELKRygsgslaNKPQVVILNKIDSVFDEDeeeeiINEKKKELADRMKEEMGHTRLMWVSAKEKDGVDDLMTRM 511
                 56666666666666666655555555554322211122223378999*******985443111114556666777778888889***************99876 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00014     0.041     117     140 ..     308     331 ..     285     343 .. 0.77
   2 !   10.1   0.3   0.00028     0.081      46     114 ..     448     527 ..     433     537 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00014
   TIGR03596 117 kairalvvGiPNvGKStliNrlak 140
                     +  vG+PN GKSt++  +++
  MMETSP1061-20121228|7511_1 308 IVADIALVGVPNAGKSTFLAAVTR 331
                 5567889***********976654 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00028
   TIGR03596  46 vknkprlivlnkaDla.dpe........ktkkwlkyfe.ek.gkkalavnakkkkkvkkilkaikkllkekkeklkakgl 114
                 ++nkp++++lnk D + d++        k+k++ + ++ e  +++ ++v+ak+k++v  +++ + + + + ke++++k  
  MMETSP1061-20121228|7511_1 448 LANKPQVVILNKIDSVfDEDeeeeiineKKKELADRMKeEMgHTRLMWVSAKEKDGVDDLMTRMASYVGKMKEEEEEKQR 527
                 579**********9753544111111113344445555322245899************999999998888877776654 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.7e-07   7.8e-05       5     127 ..     311     475 ..     308     513 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.7e-07
   TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskpgvtr..dyvteqieedGkt.........................ykvnllDTaGqedfdairrlyvreverslevvdivilvldve.eglekqtkeiiheakkk......gvpiilvvnKiDlkd..........d 127
                  i++vG +++GKst l   ++ k +i  + p++t   ++ t  i  + k+                           + l D++G ++ +        +  r +e + ++++++d+  + +  +   +++e+k +      ++p ++ +nKiD ++          +
  MMETSP1061-20121228|7511_1 311 DIALVGVPNAGKSTFLAAVTRAKPRIADY-PFTTVvpNLGTW-IPPQDKKdgnhytnfnkdgtkqsdranraagsSGLVLCDVPGLIAGASEGVGLGHAFLRHIERCRVILHLVDATgDDPVGDLAMVNDELKRYgsgslaNKPQVVILNKIDSVFdedeeeeiinE 475
                 699********************888887.855542244443.33333334556*********************99********999988888889*************998887434455**********98722223356899**********55444442221 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.014       4.2     157     180 ..     311     334 ..     304     353 .. 0.78
   2 !   11.4   0.0   9.4e-05     0.028      89     153 ..     448     515 ..     413     521 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.014
   TIGR03597 157 dvyvvGvtNVGKSsliNkllklnk 180
                 d+ +vGv N GKS+++ ++ + + 
  MMETSP1061-20121228|7511_1 311 DIALVGVPNAGKSTFLAAVTRAKP 334
                 7789***********998876554 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 9.4e-05
   TIGR03597  89 vkenkvllvvNKidllpksvklekikewlkkeake...eglkpvdillvsakkkkglkellelikkar 153
                 + +++ +++ NKid + ++ ++e+i +  kke+++   e + ++  + vsak+k g+++l++ +  + 
  MMETSP1061-20121228|7511_1 448 LANKPQVVILNKIDSVFDEDEEEEIINEKKKELADrmkEEMGHTRLMWVSAKEKDGVDDLMTRMASYV 515
                 6789999*******9999999999998888887751114455899****************9998775 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   0.1       4.6   1.4e+03      41      58 ..     243     260 ..     241     261 .. 0.91
   2 !    7.7   0.0     0.001       0.3       9      33 ..     311     335 ..     306     347 .. 0.83
   3 !    7.0   0.0    0.0017      0.49     114     177 ..     449     525 ..     387     547 .. 0.69

  Alignments for each domain:
  == domain 1    score: -4.4 bits;  conditional E-value: 4.6
   TIGR03918  41 tTtDpvekamEllplGpv 58 
                 tTtD    ++El ++G v
  MMETSP1061-20121228|7511_1 243 TTTDGDDIEYELVEVGTV 260
                 9***************98 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.001
   TIGR03918   9 hialfGrrNaGKSsliNaltgqdva 33 
                  ial+G  NaGKS+++ a+t+ +  
  MMETSP1061-20121228|7511_1 311 DIALVGVPNAGKSTFLAAVTRAKPR 335
                 69*****************987655 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.0017
   TIGR03918 114 kkipvivvlnkidlkeeeke.............keklekkkeeevvlvsakekegieelkealiellpeeaeektlv 177
                  + p +v+lnkid++ +e+e             ++ +e+  ++++++vsakek+g+++l +++++ + + +ee++  
  MMETSP1061-20121228|7511_1 449 ANKPQVVILNKIDSVFDEDEeeeiinekkkelaDRMKEEMGHTRLMWVSAKEKDGVDDLMTRMASYVGKMKEEEEEK 525
                 577888888888875443332223322211221222233344567899***************99997777555444 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0011      0.31     211     233 ..     311     333 ..     302     344 .. 0.76
   2 !    6.8   0.0    0.0023      0.68     284     372 ..     410     520 ..     395     547 .. 0.59

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0011
   TIGR00450 211 klaivGktNvGKSSLlNallkkd 233
                  +a+vG +N+GKS  l a+ +  
  MMETSP1061-20121228|7511_1 311 DIALVGVPNAGKSTFLAAVTRAK 333
                 69**************9987653 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0023
   TIGR00450 284 kaikeadlvlyvlDaskpltkdd.eliitlkk.......kkkdlllvlNKiDLa............eleilksel..kltvsllsakqlkikelvdlltekinalyskekd 372
                 + i+++ ++l ++Da+ +    d  +++++ k       ++k+ +++lNKiD +            ++++l   +   +  + l   + k k++vd+l+ ++  ++ k k+
  MMETSP1061-20121228|7511_1 410 RHIERCRVILHLVDATGDDPVGDlAMVNDELKrygsgslANKPQVVILNKIDSVfdedeeeeiineKKKELADRMkeEMGHTRLMWVSAKEKDGVDDLMTRMASYVGKMKE 520
                 67999999999999987654333255544433233333379***********99877654333332111111111012334556666777777777777777666655443 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   4.1e-05     0.012       1      29 [.     316     344 ..     316     352 .. 0.94
   2 ?    2.7   0.5      0.03       8.7     100     175 ..     451     535 ..     448     578 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.1e-05
   TIGR00437   1 GnpNvGKstlfnaLtgsnqkvgNwpGvTV 29 
                 G pN GKst++ a+t ++ +++ +p +TV
  MMETSP1061-20121228|7511_1 316 GVPNAGKSTFLAAVTRAKPRIADYPFTTV 344
                 78**************************9 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.03
   TIGR00437 100 iplilalNlvd....eAekkgiride.....ekLeerLG.vpvvplsatkgrgieelkkaideekaiklvekkkraieilkeaesl 175
                 +p +++lN++d    e e + i  ++     ++++e++G   ++ +sa+++ g+++l+  +  +   k++e++++ +++++  + +
  MMETSP1061-20121228|7511_1 451 KPQVVILNKIDsvfdEDEEEEIINEKkkelaDRMKEEMGhTRLMWVSAKEKDGVDDLMTRMASYV-GKMKEEEEEKQREIEARDAT 535
                 67777788765222144555553332111114578889944688899999*******99999643.23333333333333333333 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   1.1e-05    0.0033     186     245 ..     449     511 ..     445     538 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.1e-05
   TIGR00487 186 anvPiivainkiDk...peanpDrvkqelseyglvpeewGGetifvpvsalkgkgideLldai 245
                 an P +v++nkiD    ++ + + ++++ +e+    +e  G+t ++ vsa++ +g+d+L+  +
  MMETSP1061-20121228|7511_1 449 ANKPQVVILNKIDSvfdEDEEEEIINEKKKELADRMKEEMGHTRLMWVSAKEKDGVDDLMTRM 511
                 899**********744234444455555667765566666899****************9754 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0057       1.7      37      56 ..     312     331 ..     307     336 .. 0.87
   2 !    7.7   0.6    0.0012      0.37     175     250 ..     453     528 ..     429     549 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0057
   TIGR00750  37 vGltGvPGaGkstlveklie 56 
                 + l GvP aGkst++ ++++
  MMETSP1061-20121228|7511_1 312 IALVGVPNAGKSTFLAAVTR 331
                 6789***********99986 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0012
   TIGR00750 175 DivvvnkaDk..eeaekerlarlelsldleelferekgWrPkvlktsavegrGikelvdaieehkkvlkksGkleekr 250
                  +v++nk D   +e e+e +++ e + +l + + +e+  + +++ +sa+e+ G+++l+  +  +   +k+  + +++ 
  MMETSP1061-20121228|7511_1 453 QVVILNKIDSvfDEDEEEEIIN-EKKKELAD-RMKEEMGHTRLMWVSAKEKDGVDDLMTRMASYVGKMKEEEEEKQRE 528
                 6788999997323333333332.22223323.3345667899**********************99999866544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.44u 0.17s 00:00:00.61 Elapsed: 00:00:00.38
# Mc/sec: 2070.14
//
Query:       MMETSP1061-20121228|7512_1  [L=1238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.15s 00:00:00.73 Elapsed: 00:00:00.39
# Mc/sec: 4189.81
//
Query:       MMETSP1061-20121228|7513_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 2731.16
//
Query:       MMETSP1061-20121228|7517_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2484.22
//
Query:       MMETSP1061-20121228|7519_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-23   80.2  16.6    1.9e-22   77.6  11.5    1.9  1  TIGR00271 TIGR00271: uncharacterized hydrophobic domain
    5.1e-22   76.4   3.3    5.1e-22   76.4   2.3    1.9  2  TIGR00341 TIGR00341: TIGR00341 family protein


Domain annotation for each model (and alignments):
>> TIGR00271  TIGR00271: uncharacterized hydrophobic domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6  11.5   9.3e-26   1.9e-22       4     174 ..     107     308 ..     104     309 .. 0.87

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 9.3e-26
   TIGR00271   4 skeylivvilatiiavlGlvldnavliigaMliaPllgpilglavalvvgdvkLalrsalnlLlalalvivfalil.glfvplkltt....pqilsevspdll..slivavlaGiagslsltsgiseslvGVaisvallppaavvgvalgigdllassssl........................illllNlvaisvaaliv 174
                 + +y+  +++a++ia +Gl  ++ + ii++Ml++Pl+gp+ ++a +++ gd k++  + ++++ +la+ i++ li+ g + +++        ++ s++  +++   + +a ++G+   + l  +  +slvGVais++llppa+++g++ +i      ++                           l+++N++ i+va++ +
  MMETSP1061-20121228|7519_1 107 NFNYSTLLVIASVIAGVGLGSNSSASIIASMLVSPLMGPVTAMAYGISIGDFKMVRMAFVTEVTSLAICIIIGLIIaGCMKEFSVADgwptDEMSSRTERETFlcGVPIAFFSGLGVAVGLLDSQTNSLVGVAISASLLPPAVNAGMLWVIHSDFTEREHEreqerdrehefyvsehliggtaslCLTIMNIAVIIVASMFM 308
                 679999******************************************************************99988777777776666454566666655441156799**************************************999876666654467889999999999999999999999999999999999876 PP

>> TIGR00341  TIGR00341: TIGR00341 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   2.3   2.5e-25   5.1e-22     113     257 ..     107     258 ..      77     262 .. 0.86
   2 ?   -0.3   0.0     0.057   1.2e+02     264     284 ..     289     309 ..     281     335 .. 0.81

  Alignments for each domain:
  == domain 1    score: 76.4 bits;  conditional E-value: 2.5e-25
   TIGR00341 113 skerivvvilasivavaGlikdnvalligamiiAPLlgpviglavslsvgdvkLalksikklllelilvivlsliaalfl.vlk....eltpqilsrtevdil..seivAvlaGiagslSlasgieeelvGVaisvslLpPavvlGlllais 257
                 + + +  +++as++a +Gl  +  a +i++m++ PL+gpv ++a ++s+gd k++  +  +++  l + i++ li a  +   +      t ++ srte + +   + +A   G+  ++ l     ++lvGVais+slLpPav  G+l +i 
  MMETSP1061-20121228|7519_1 107 NFNYSTLLVIASVIAGVGLGSNSSASIIASMLVSPLMGPVTAMAYGISIGDFKMVRMAFVTEVTSLAICIIIGLIIAGCMkEFSvadgWPTDEMSSRTERETFlcGVPIAFFSGLGVAVGLLDSQTNSLVGVAISASLLPPAVNAGMLWVIH 258
                 55677889**************************************************************999876654414445566567899999987644114568999999999999999************************9875 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.057
   TIGR00341 264 kaliLlliNvvaldvgalviv 284
                  +l L+++N++ + v+++ ++
  MMETSP1061-20121228|7519_1 289 ASLCLTIMNIAVIIVASMFMF 309
                 578888888888888877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1687.86
//
Query:       MMETSP1061-20121228|7518_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 1212.34
//
Query:       MMETSP1061-20121228|7522_1  [L=889]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.054    9.5   0.0       0.08    8.9   0.0    1.1  1  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0     2e-05      0.08      31     138 ..     222     343 ..     221     361 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 2e-05
   TIGR00472  31 lEveeveelkks..lkgvvvGkvlevekhPnadkLkvckVdi.gekellqivcgaknveag........kkVvvAlegAkLpng.....lkIkksklrGveSeGMlCSleELgleeeklsdgii 138
                 +E+e+veel++   ++++ ++  + ve+  ++++L+ +k +    +e+++ v ga++v ++         +V   ++g  Lp++     l I+   +rG +S GM+ +   Lgl+++   d i+
  MMETSP1061-20121228|7522_1 222 IEIETVEELRNAilDQQLSLADTVIVERKSTTKQLENTKTKAlAVEEPIETVQGAPQVFDHavrdlireRFVNGTTPGHRLPEDtatlaLAIEGGGMRGCVSAGMVAAITALGLSDS--IDSIY 343
                 678888888775223558888888889999999999888885245678999999999999988888888889999999999999999999*************************98..46665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (889 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.49
# Mc/sec: 2394.66
//
Query:       MMETSP1061-20121228|7520_1  [L=1432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.13s 00:00:00.68 Elapsed: 00:00:00.51
# Mc/sec: 3706.05
//
Query:       MMETSP1061-20121228|7523_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-157  524.6   0.0   1.4e-157  524.2   0.0    1.0  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
   3.4e-106  354.3   0.0   4.2e-106  353.9   0.0    1.0  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
      0.001   16.1   1.0       0.02   11.9   0.1    3.1  3  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
     0.0053   13.6   0.0     0.0088   12.9   0.0    1.2  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
  ------ inclusion threshold ------
      0.022   11.9   0.0      0.036   11.2   0.0    1.3  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
      0.026   10.9   0.0      0.037   10.4   0.0    1.1  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
       0.03   10.9   0.0      0.045   10.3   0.0    1.1  1  TIGR02759 TraD_Ftype: type IV conjugative transfer system coupling protein TraD


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  524.2   0.0  2.5e-160  1.4e-157      65     689 ..      43     682 ..      32     700 .. 0.89

  Alignments for each domain:
  == domain 1    score: 524.2 bits;  conditional E-value: 2.5e-160
   TIGR01967  65 nlPvsakrediakaiaenqvviiaGetGsGkttqlPkiclelGrGsrG..lightqPrrlaarsvaervaeelgtplGevvGykvrfedqvse.etlvklltdGillaelqqdrflerydtiiideaherslnidfllGylkellkrrP......dlkiiitsatidverfskhfnnaPiievsGrtyPvevryrPleeeqedeidldqleallaavdelveeekGdiliflpGereirdaaealrkr.klrhve..ilPlyarlsaeeqqrvfqp.........hsgrrivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcGrvaeGicirlyseedfnsr.PeftdPeilrtnlasvilqmlalrlGdiaafPfieaPdkrairdGlrlleeldalkedeaeikltpiGrqlaqlPvdPrlarmlleaerlgclqevliiasalsiqdprerPlekkqaadqaharfkdvesdflalvklWryleeqrkalsanalrkklkkeylnylrvreWqdlvrqlkqvvkelglkvneep....adyd..aihkallsGllsqiGakdekkeysGarnr.kflifPgselakksPkwvmaaelvetsklyarlvakiePeWveevaahlikk 689
                 +lPv + ++d+ k + enq +++ GetGsGkttq+P+  le G+ ++G   ++ tqPrr+aa s+a+rva+e++ +lG+ vGy +rfed +++ +t++k+ltdG+ll e  +d +l+ry +i++de her+l  d ++G+l e+l++r       +lk++i sat+d e+f ++f+naP+++v Grt+Pv++ y    e++       +  a+ +++     ee+Gdil+fl+Ge ei +a e +r++ +  + e  + Ply+ l +++q+++f++         + gr++v++tn+aetslt+ gi yv+d+G ++   +  r +v  l + pis+asa qr Gr Gr  +G c rly e+ f++   e t Peilr +++ v+l++++l++ d+ +f f+++P ++++   l+ll+ l+al+++    ++t+iG q+++lP+dP+la+++l +  +gc  e++ i+++ls+     rP e  ++ad+a a+f+  esd l+l++ ++  ++        + r+++ ++y+n   +    ++ rql  ++k l++ + ++     ++++   + ka+ +G++ q+  +++  +y   +++ +  i+P+s + + +P+w +  e+  t+k y r+v+  + +W+ e+a+h    
  MMETSP1061-20121228|7523_1  43 KLPVYQFKDDLVKKVLENQSIVVEGETGSGKTTQIPQFLLEAGLATQGktCVACTQPRRVAATSIAQRVADEMDVELGKEVGYTIRFEDVSDPySTVLKFLTDGMLLREAMHDPLLSRYSAIVLDECHERTLATDVIMGLLMEILPKRKkgsehgELKVVIMSATLDAEKFQEYFHNAPLMKVPGRTFPVDIFYTAKPERNY------VEAAVRTTLHIHQCEEPGDILVFLTGEAEIEQACEEIREKgRSMNSElvVYPLYSSLPPDQQRKIFSAapgprtpggKPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVFNPRIRVESLLVSPISRASAKQRAGRAGRTRPGKCFRLYTEKSFHDDlQETTYPEILRSKMSNVVLTLKKLGIDDLVHFDFLDPPAPETLMRALELLNYLGALDDEG---EMTEIGYQMSELPLDPQLAKLILVSPDYGCSAEIVTIVACLSVPQIFMRPRESAKQADEAKAQFSHHESDHLTLLRAFNEYDQ----IPDREKRQWCWDNYINERSMISVVNVRRQLIGIMKRLDIPLVSSDikgdGSFAsfDVRKAITAGMFMQVAYRQKTGDYLTIKDNqHVAIHPSSVI-NSRPEWAIFEEFALTTKNYIRTVTVTDVDWLVELAPHYFDL 682
                 79*******************************************998446899************************************99836778*************************************************953444448**************************************75333332......33556667777777999*****************99986525555662267***************86222222222358****************************************************************************875278999***************************************************999...9**********************************************************************999887776554....4556679********************************9875443444444422589********************99986515679998865.678**********************************8765 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.9   0.0  7.2e-109  4.2e-106       1     453 [.      44     515 ..      44     553 .. 0.89

  Alignments for each domain:
  == domain 1    score: 353.9 bits;  conditional E-value: 7.2e-109
   TIGR01970   1 lPieavlPklrdalaakpqvvLeappGaGkstalPLalLdapwligrkiil..LePrrlaaravaerlaselgeevGetvGyrvrlenkvsa.ktrlevvteGiltrmlqdDPeLegvdllifDefhersldaDlaLalaldvqsalreD.....LkilimsatLdgerlselldeapvveseGrsfPveirylplredealedrvaraveealaeesgsvLvfLPGqaeirrveeaLaerlda..sevelcPLyGeleleaqdraikpaaaGr.......rkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeq.aerlaaaaepeilqadLaglalelarWGak.psdlrfldaPPaaalaaakeLLqrlgaldaegkltahGkalaeLgvePrlaalllsakseeeaalaaelaalLeerdlerkgga 453
                 lP+ +   +l + +  ++ +v+e  +G+Gk+t++P  lL+a+  +++k  +    Prr+aa ++a+r+a+e++ e G++vGy +r+e    + +t l   t+G+l r   +DP L++ +++++De her l++D+ + l +++  + +       Lk++imsatLd e+++e +++ap+++  Gr+fPv+i y++  e++ +e +v+++++    ee+g++LvfL G+aei+++ e++ e+ ++  se+ + PLy  l+ ++q+++ ++a+  r       rkvv++tniaetslti+G+  v+D g+ ++  f+p+  +  L +  is+asa+qraGraGr+ pG c+rL++e+  ++ l++++ peil++ +++++l l + G +   ++ fld P   +l++a eLL+ lgald eg++t+ G ++ eL+++P+la+l+l + + +  a+ +++ a L  +++  +  +
  MMETSP1061-20121228|7523_1  44 LPVYQFKDDLVKKVLENQSIVVEGETGSGKTTQIPQFLLEAGLATQGKTCVacTQPRRVAATSIAQRVADEMDVELGKEVGYTIRFEDVSDPySTVLKFLTDGMLLREAMHDPLLSRYSAIVLDECHERTLATDVIMGLLMEILPKRKKGsehgeLKVVIMSATLDAEKFQEYFHNAPLMKVPGRTFPVDIFYTAKPERNYVEAAVRTTLHIHQCEEPGDILVFLTGEAEIEQACEEIREKGRSmnSELVVYPLYSSLPPDQQRKIFSAAPGPRtpggkpgRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVFNPRIRVESLLVSPISRASAKQRAGRAGRTRPGKCFRLYTEKSfHDDLQETTYPEILRSKMSNVVLTLKKLGIDdLVHFDFLDPPAPETLMRALELLNYLGALDDEGEMTEIGYQMSELPLDPQLAKLILVSPDYGCSAEIVTIVACLSVPQIFMRPRE 515
                 5777777778888888999***********************9999886552279********************************987664799*****************************************999997444332222345*************************************************99999999999***********************997654459******************99987642222223559**********************************************************************9876488999*************************999************************************************************9999999999998876544333 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.077        45       2      50 ..      63     112 ..      62     130 .. 0.78
   2 !   11.9   0.1   3.4e-05      0.02     125     179 ..     161     223 ..     137     349 .. 0.65
   3 ?   -2.2   0.0      0.64   3.8e+02     310     339 ..     377     404 ..     366     427 .. 0.62

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.077
   TIGR01587   2 lvieAPtGyGKteaallwalk.likkqkadkvifalPtratanamyerlk 50 
                 +v+e  tG+GKt+    ++l+  +  q +  v  + P r+ a  +++r+ 
  MMETSP1061-20121228|7523_1  63 IVVEGETGSGKTTQIPQFLLEaGLATQGKTCVACTQPRRVAATSIAQRVA 112
                 689999******98877777755667777777788888888888888775 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 3.4e-05
   TIGR01587 125 nSvliiDEvh...ayeeytkalllallevlk....dvdvkillmsAtlp.kllkeylekielv 179
                 +S +++DE h   +  + +++ll+ +l   k    + + k+++msAtl  + ++ey+++  l+
  MMETSP1061-20121228|7523_1 161 YSAIVLDECHertLATDVIMGLLMEILPKRKkgseHGELKVVIMSATLDaEKFQEYFHNAPLM 223
                 79********332233444555554554333232123569********999999999887554 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.64
   TIGR01587 310 iQRlGRlaRygrkirenrevyvltelledk 339
                  QR+GR  R   + ++ + +y  + +++d 
  MMETSP1061-20121228|7523_1 377 KQRAGRAGR--TRPGKCFRLYTEKSFHDDL 404
                 69****999..5555667777777666654 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   1.5e-05    0.0088     133     161 ..      49      77 ..      20      83 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 1.5e-05
   TIGR02788 133 ikeFlklaiaakkniiisGgtgsgKTTfl 161
                 +k+ l + + ++++i++ G tgsgKTT +
  MMETSP1061-20121228|7523_1  49 FKDDLVKKVLENQSIVVEGETGSGKTTQI 77 
                 55667778999****************75 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.1e-05     0.036     126     153 ..      50      77 ..      37     111 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.1e-05
   TIGR02782 126 advlreavaarknilvvGGtgsGkttLa 153
                 +d l++ v+ ++ i+v G tgsGktt +
  MMETSP1061-20121228|7523_1  50 KDDLVKKVLENQSIVVEGETGSGKTTQI 77 
                 5789999*******************65 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   6.3e-05     0.037     156     248 ..      53     147 ..      29     191 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.3e-05
   TIGR01447 156 avalalksnfslitGGPGTGKTttvarlllalikqskaqgklrialaaPTGkAaarLteslkkavkklale.....eeliaalpseasTihrLLgakp 248
                  v+++l+++ +++ G  G GKTt + + l  l +  + qgk  +a + P   Aa+ +++ +  ++ +++l        ++ +++   sT+ ++L +  
  MMETSP1061-20121228|7523_1  53 LVKKVLENQSIVVEGETGSGKTTQIPQFL--LEAGLATQGKTCVACTQPRRVAATSIAQRVADEM-DVELGkevgyTIRFEDVSDPYSTVLKFLTDGM 147
                 6899***********************87..56788888999***************99999998.55665234433445555556778888877666 PP

>> TIGR02759  TraD_Ftype: type IV conjugative transfer system coupling protein TraD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   7.6e-05     0.045     168     197 ..      52      81 ..      28      95 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 7.6e-05
   TIGR02759 168 kllkkesEvqhllidGttgsGKsealrkll 197
                  l+kk  E q ++++G tgsGK+  + ++l
  MMETSP1061-20121228|7523_1  52 DLVKKVLENQSIVVEGETGSGKTTQIPQFL 81 
                 467999*****************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.43
# Mc/sec: 2179.35
//
Query:       MMETSP1061-20121228|7524_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-20   70.0   0.0    3.8e-20   69.6   0.0    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    9.4e-20   68.9   0.0    1.2e-19   68.5   0.0    1.1  1  TIGR02415 23BDH: acetoin reductases
    1.1e-19   69.0   0.0    1.5e-19   68.5   0.0    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    4.3e-18   63.3   0.0    5.5e-18   63.0   0.0    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.4e-15   54.7   0.0    3.2e-15   54.3   0.0    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.9e-14   50.2   0.0    9.2e-14   49.3   0.0    1.4  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.1e-13   49.1   0.0    1.7e-13   48.5   0.0    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    2.2e-13   48.0   0.0    3.1e-13   47.5   0.0    1.2  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.6e-08   32.1   0.1    1.2e-07   29.1   0.0    2.0  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    7.8e-08   29.8   0.0    1.1e-07   29.4   0.0    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
    4.2e-07   27.3   0.1     0.0069   13.5   0.0    2.1  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
  ------ inclusion threshold ------
      0.011   12.7   0.0       0.32    7.9   0.0    2.2  2  TIGR02685 pter_reduc_Leis: pteridine reductase


Domain annotation for each model (and alignments):
>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   1.1e-22   3.8e-20     409     600 ..      63     253 ..      52     282 .. 0.94

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 1.1e-22
   TIGR02632 409 ekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavl 600
                 +k +  + alvtGg+sGiG++++ +l+ +G  vv++ ld + ++a+ ++l + f + + +++ +         ++++e++ +   v iv nnaG  v+  +++  l +   n++ +at    ++++    l   +  g +vf++s+ + + ++ +  y a+ka    l+  l iel +lgi v +v P  v 
  MMETSP1061-20121228|7524_1  63 KKRYDAKWALVTGGGSGIGKALTFKLARQGLNVVVVSLDDDILKATMKQLEETFSELEFRSVGVSFSPGVDYLKMIDEATKDI-EVPIVFNNAGFLVTGFFDQAPLGKLLANMECNATAAVNISHHFSSKLVSAKKKGCIVFTSSVAGFIPTPFSGMYGATKAFVSQLACSLHIELQSLGIDVCAVHPSPVA 253
                 46778899*************************************************************999******99987.69****************************************99999999999***************************************************9885 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   3.6e-22   1.2e-19       1     195 [.      69     264 ..      69     276 .. 0.92

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 3.6e-22
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdks..eveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeidekl 195
                 k alvtG++ GiGka++ +La+ G++v+v+ l+++ +k+t+k+l+e+  +  + ++ vs     +  +++++a++++ e+ ++ nnaG  ++  +++    +l    + n ++ +      ++k+   k+kG i+  +s+ag   +p  ++y +tk  v  l+ +   eL + gi v a  P  v  +  +++d+k+
  MMETSP1061-20121228|7524_1  69 KWALVTGGGSGIGKALTFKLARQGLNVVVVSLDDDILKATMKQLEETFSELEFRSVGVSFSPgvDYLKMIDEATKDI-EVPIVFNNAGFLVTGFFDQAPLGKLLANMECNATAAVNISHHFSSKLVSAKKKGCIVFTSSVAGFIPTPFSGMYGATKAFVSQLACSLHIELQSLGIDVCAVHPSPVASNFYNDLDHKI 264
                 679*******************************************99999998888877651156689******98.789999******9999999999***********999998899999***************************************************************99999999876 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   4.3e-22   1.5e-19       1     194 [.      71     265 ..      71     280 .. 0.89

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 4.3e-22
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevk..elveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmik.krsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvk 194
                 alvtG++ giGka++ kla++g +vv+ +  +++ ++++ ++l+e+  +    ++ vs +  v+  ++++e+++++ e+ i+ nnAG    +++ +    +  + ++ n +++ n++++ + k++  k++G i+  ssv+g++  +    Y a+Ka +  l+ sl  El s +i v av P  +++++ + l++k+ 
  MMETSP1061-20121228|7524_1  71 ALVTGGGSGIGKALTFKLARQGLNVVVVSL-DDDILKATMKQLEETFSELEFRSVGVSFSPGVDylKMIDEATKDI-EVPIVFNNAGFLVTGFFDQAPLGKLLANMECNATAAVNISHHFSSKLVSaKKKGCIVFTSSVAGFIPTPFSGMYGATKAFVSQLACSLHIELQSLGIDVCAVHPSPVASNFYNDLDHKID 265
                 79**************************65.788999999****99888888888888777665226777777654.6889*************************************998887651679**************************************************************99874 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   1.6e-20   5.5e-18       2     185 ..      69     254 ..      68     282 .. 0.89

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 1.6e-20
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeaggevlalkadvtkeeeia..dlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpi.mkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrt 185
                 k alvtG +sGig+a++ +la++G +vvv++l+++ ++a+ k+lee+  e +  ++ v+ +  ++  ++i+++++++ ++ i+ nnAG       ++ p  k  + ++ n t+a+ ++++   + + +++ G i+  +sv g+   +f   Y a+K  +  l+ +l +E  + gi + a+ P+ v  
  MMETSP1061-20121228|7524_1  69 KWALVTGGGSGIGKALTFKLARQGLNVVVVSLDDDILKATMKQLEETFSELEFRSVGVSFSPGVDylKMIDEATKDI-EVPIVFNNAGFLVTGFFDQAPLGKLLANMECNATAAVNISHHFSSKlVSAKKKGCIVFTSSVAGFIPTPFSGMYGATKAFVSQLACSLHIELQSLGIDVCAVHPSPVAS 254
                 779*******************************************9999999888888777665115555555554.466899********************************999976651678999***************************************************98865 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   9.2e-18   3.2e-15       2     195 ..      70     264 ..      69     286 .. 0.87

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 9.2e-18
   TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvapneerakewlq.ekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegml.ergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredv 195
                  alvtGg  GiG+a++ +la++G +vv     ++  ++ ++q e+ +++ +++ v +  s   +  +++++ ++++ +v ++ nnaG     +f +    +  + ++ n ++  n+ +   ++++  ++ G i+  ssv G         y a+ka +  ++ +l  e  + g+ v ++ P  +a +  + + +++
  MMETSP1061-20121228|7524_1  70 WALVTGGGSGIGKALTFKLARQGLNVVVVSLDDDILKATMKQlEETFSELEFRSVGVSFSPGVDYLKMIDEATKDI-EVPIVFNNAGFLVTGFFDQAPLGKLLANMECNATAAVNISHHFSSKLVsAKKKGCIVFTSSVAGFIPTPFSGMYGATKAFVSQLACSLHIELQSLGIDVCAVHPSPVASNFYNDLDHKI 264
                 69***********************998887655444444442677888888888888888888889999988887.7999***************************************9998626899*************999999*********************************99999888776643 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   2.7e-16   9.2e-14       2     205 ..      67     258 ..      66     278 .. 0.89

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 2.7e-16
   TIGR03971   2 eGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamie 205
                 + k al+tG   G G+a + +la++G +++++ l +++        at ++l+et + +e      +++   v  l+ + ++ ++ +     + +v +naG l  g   +    +    ++ n + + +  +    +l+ +k+ G i+ +ssvag   +p+++ y a+k  +  l+ +l  el   gi v ++hP  v+ +  +
  MMETSP1061-20121228|7524_1  67 DAKWALVTGGGSGIGKALTFKLARQGLNVVVVSLDDDI------LKATMKQLEETFSELEFRSVG-VSFSPGVDYLKMIDEATKD-I----EVPIVFNNAGFLVTGFFDQAPLGKLLANMECNATAAVNISHHFSSKLVSAKKKGCIVFTSSVAGFIPTPFSGMYGATKAFVSQLACSLHIELQSLGIDVCAVHPSPVASNFYN 258
                 5789*************************999887666......4799*********99875543.5677788888888777665.3....589***********999999999999********************************************************************************9987765 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0     5e-16   1.7e-13       5     192 ..      68     258 ..      65     277 .. 0.89

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 5e-16
   TIGR01832   5 GkvalvtGantGlGqgiavglaeaGadivgvgise..lsetqekvealGr..kflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnnte 192
                  k alvtG  +G+G++++  la+ G ++v v+  +  l+ t++++e++    +f s+ + ++   +  +++dea++ + ++ i+ nnaG +      + +  +  + ++ n  a   +s++++ kl+   +kg i+  +s+  f        y a+k  v  l+ +l  e+ + gi+v a+ P  +++n  +
  MMETSP1061-20121228|7524_1  68 AKWALVTGGGSGIGKALTFKLARQGLNVVVVSLDDdiLKATMKQLEETFSelEFRSVGVSFSPGVDYLKMIDEATKDI-EVPIVFNNAGFLVTGFFDQAPLGKLLANMECNATAAVNISHHFSSKLVSAKKKGCIVFTSSVAGFIPTPFSGMYGATKAFVSQLACSLHIELQSLGIDVCAVHPSPVASNFYN 258
                 699*************************99997653378999999987652268899999999999999******999.89*********99887777777788899*************************************9999999********************************998887555 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   9.2e-16   3.1e-13       3     222 ..      68     284 ..      66     299 .. 0.86

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 9.2e-16
   TIGR03206   3 dkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavavditdrasvdaa..vaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmv.erkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddl 222
                  k a+vtggg gig a+  ++a++g +v v+ l+ +  +   +++ e+  + e  +v ++    vd    +  a++ +  v ++ nnag+ v + f ++  ++    +  n t a+ + h     +v  +k+g iv  +s a+ + +    +y a k  +  ++ +l  el   gi v  v p p  + +++d+ +   k + l  a  +a+p   l  pdd+
  MMETSP1061-20121228|7524_1  68 AKWALVTGGGSGIGKALTFKLARQGLNVVVVSLDDDILKATMKQLEETFSELEFRSVGVSFSPGVDYLkmIDEATKDI-EVPIVFNNAGFLVTGFFDQAPLGKLLANMECNATAAVNISHHFSSKLVsAKKKGCIVFTSSVAGFIPTPFSGMYGATKAFVSQLACSLHIELQSLGIDVCAVHPSPVASNFYNDLDH---KIDILESACKQAVPPEDL--PDDI 284
                 5889**********************************************9999999999998888641144444333.578999*********9999999999888999******9866666666526899************************************************************9965...567788888888886554..5555 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   3.6e-10   1.2e-07       2     195 ..      72     265 ..      71     276 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 3.6e-10
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvv.lnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdlk 195
                 lvtg   gig+a++ kla +g ++ v    d    ++++++++ + ++ ++ +  v+    v  +   d a +     +v  nag      f      +  a +e n  +  n+ h     ++ a+k g i+  +sv+g +       y a+ka +   + +l +el +  i v  + p  + +++ ++ +++++
  MMETSP1061-20121228|7524_1  72 LVTGGGSGIGKALTFKLARQGLNVVVVSLDD-DILKATMKQLEETFSELEFRSVGVSFSPGVDYLKMIDEATKDIEVPIVfNNAGFLVTGFFDQAPLGKLLANMECNATAAVNISHHFSSKLVSAKKKGCIVFTSSVAGFIPTPFSGMYGATKAFVSQLACSLHIELQSLGIDVCAVHPSPVASNFYNDLDHKID 265
                 8**********************98866544.4556777777777777777666776666666665555555555555552689**99999999999999********************************************************************************999999998888664 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   3.1e-10   1.1e-07       3     173 ..      71     228 ..      69     248 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 3.1e-10
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdm 173
                 +lvtG   G+G++l  +la+    +g  +v+++ +d+ Lk + +++e + s+l    v +  +  ++v d+lk++ e +k  + e  +++nnaG l     ++ + +   ++  + + n t++v ++ ++  kl  +   +  +v  ss++   p +   +Y a+ka    
  MMETSP1061-20121228|7524_1  71 ALVTGGGSGIGKALTFKLAR----QGLNVVVVSLDDDILKATMKQLEETFSELEFRSVGV--SFSPGV-DYLKMIDEATK--DIEVPIVFNNAGFLVT---GFFDQAPLGKLLANMECNATAAVNISHHFSSKLV-SAKKKGCIVFTSSVAGFIPTPFSGMYGATKAFVSQ 228
                 89*****************9....9**********************9999987766555..555655.68999999865..67788*******9853...444567788888999***************9999.6667789**********99999999****997655 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   6.7e-05     0.023       5      42 ..      68     105 ..      64     127 .. 0.76
   2 !   13.5   0.0     2e-05    0.0069     132     192 ..     196     257 ..     175     299 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.7e-05
   TIGR03325   5 devvlvtggasglgralvdrfvaegarvavldksaagl 42 
                  + +lvtgg+sg+g+al  +   +g +v v+    + l
  MMETSP1061-20121228|7524_1  68 AKWALVTGGGSGIGKALTFKLARQGLNVVVVSLDDDIL 105
                 5679*********************9999875444333 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2e-05
   TIGR03325 132 asrgsviftvsnagfypngggalytaakhavvglvkelayelap.yvrvngvapgglstdlr 192
                 + +g+++ft s agf p+    +y a+k  v  l   l  el    + v  v p  +++++ 
  MMETSP1061-20121228|7524_1 196 KKKGCIVFTSSVAGFIPTPFSGMYGATKAFVSQLACSLHIELQSlGIDVCAVHPSPVASNFY 257
                 468**************************99999999*999976259999999998887764 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00094      0.32       3      30 ..      70      97 ..      68     113 .. 0.90
   2 ?    2.6   0.0     0.037        13     166     204 ..     212     250 ..     175     263 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00094
   TIGR02685  3 aalvtGaakriGrsiavklhqeGyrvvl 30
                 alvtG+   iG++++ kl ++G +vv+
  MMETSP1061-20121228|7524_1 70 WALVTGGGSGIGKALTFKLARQGLNVVV 97
                59***********************998 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.037
   TIGR02685 166 pllgfslytmakealeGltrsaalelaslqirvngvapG 204
                 p +   +y  +k  ++ l+ s  +el sl+i v +v p 
  MMETSP1061-20121228|7524_1 212 PTPFSGMYGATKAFVSQLACSLHIELQSLGIDVCAVHPS 250
                 45555699999999**********************984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.28u 0.18s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 1393.22
//
Query:       MMETSP1061-20121228|7521_1  [L=1442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.20s 00:00:00.71 Elapsed: 00:00:00.44
# Mc/sec: 4325.64
//
Query:       MMETSP1061-20121228|7525_1  [L=724]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.39
# Mc/sec: 2450.26
//
Query:       MMETSP1061-20121228|7526_1  [L=703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-07   28.2   3.6    1.9e-07   28.2   2.5    2.2  3  TIGR00893 2A0114: D-galactonate transporter


Domain annotation for each model (and alignments):
>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.17   7.1e+02      17      40 ..      99     124 ..      92     136 .. 0.62
   2 ?    0.7   0.1     0.011        43      66     144 ..     211     286 ..     144     294 .. 0.76
   3 !   28.2   2.5   4.7e-11   1.9e-07     201     385 ..     370     555 ..     349     566 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.17
   TIGR00893  17 avtlked..Lglsaaqyglvfsafsi 40 
                 + +l++d  L++sa++yg+  ++ s+
  MMETSP1061-20121228|7526_1  99 QEYLMTDpqLQMSATTYGVLLTLISM 124
                 45566654578888888887776553 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.011
   TIGR00893  66 ivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilve 144
                 iv++g+ ++ +     +v+l+ + +++G+ E+ ++ +    v   F     a a ++ ++++ l+ +  + +v w++ +
  MMETSP1061-20121228|7526_1 211 IVVYGFGLGSMH--SIPVGLFGA-FVFGVGEGCVMVAARAFVGHEFWGGDGAFAQGVLIAMNNLAMMASKNIVPWLIET 286
                 444554444443..477788877.779999999988888888888888899999999999*****99999999996654 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 4.7e-11
   TIGR00893 201 seakkaqikelLkd.rrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiagl.vlsllliatnlva..skiaalalvalaffgkgl.aailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvva 385
                 +++  +++ +l++   +++++a+g+++  ++  +f+ ++ ++l +e+g+++ +ag ++s+  ++++ + +l+g+l+         +v+a + a+++ + ++sl+++ +++v    +   l+ ++   +++g+   i +a+i+ +++    g++ +++++lG + ++ + iv+g++ + tG   +  +vv+
  MMETSP1061-20121228|7526_1 370 NHSGFSSMAALVNLpLTFWVVAIGRAIFLVTFKVFSRYSNSFLIEEYGVDAVSAGRISSVNELFALFS-PLVGFLAYRSPGG--IVVFALAGAVLGTVsIASLAFVPVSYVLknLPGGPLTPLVGISIAHGIiIPISIAMIPHTVPVTQLGMAFAVFEVLGSTLNL-TDIVFGWLRDHTGNYDIPXAVVV 555
                 444444444444331479***********************************************997.7889987654444..46666666655544134556666666652255566665555566777779999************************99997.57***********8877666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 3092.94
//
Query:       MMETSP1061-20121228|7527_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1673.86
//
Query:       MMETSP1061-20121228|7530_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 2381.30
//
Query:       MMETSP1061-20121228|7528_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 674.61
//
Query:       MMETSP1061-20121228|7529_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2771.77
//
Query:       MMETSP1061-20121228|7531_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-05   20.7  17.9     0.0064   14.5   2.6    3.3  2  TIGR00880 2_A_01_02: multidrug resistance protein
  ------ inclusion threshold ------
       0.12    9.4   2.4       0.21    8.7   1.6    1.3  1  TIGR01742 SA_tandem_lipo: Staphylococcus tandem lipoproteins


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   3.4   2.1e-05     0.043       1     104 [.     149     263 ..     149     298 .. 0.71
   2 !   14.5   2.6   3.1e-06    0.0064      26     111 ..     446     539 ..     420     575 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.1e-05
   TIGR00880   1 glllagyAlgqlvvsplsglltd........rvGrkpvllvglfifvlsqllfalssnitvlii....arilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGp 104
                 g ++a+++  qlv spl+g+l+d        ++G + ++lv+ ++ ++s ll   ++++  l i     ++++ +g ++  ++  ali d ++  + + a g+l+  +++g + G 
  MMETSP1061-20121228|7531_1 149 GCFVAISGFTQLV-SPLAGMLSDtyrpprqfQLGQRMPYLVLGSVLSVSGLLGEYVESYHKLWIpyavFFFFHMIGLNITYAMMIALIPDQVPHSQTGMANGILAFLLVTGSLTGF 263
                 6799999999985.9999999994444444457***********************999999872211455555666666666666666666666777777777777777766664 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 3.1e-06
   TIGR00880  26 Grkpvll.vglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeee.......rsvalgllsagialgpilGpllGavla 111
                 Gr+++ + +   +  + +l+++ ++++ ++ ++ +  G + +a l++ ++l++d  ++++        ++ lg++ ++++lg  +Gp++G+ l 
  MMETSP1061-20121228|7531_1 446 GRRKPFVyIACTLLGAITLAMISAETMNTMTMLCFCFGAANGAYLTMETSLAIDTLPTDYhdgpsggNAQLLGIWGVAAFLGSAIGPMIGGPLL 539
                 6665544144445556677777888899999999999*******************988623333335799*******************9776 PP

>> TIGR01742  SA_tandem_lipo: Staphylococcus tandem lipoproteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.6    0.0001      0.21      57      92 ..      33      68 ..      31      98 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0001
   TIGR01742 57 YdkeGyrdgefkknDkgtWvieselvvqpkdeslke 92
                Yd + y++++++++D + W   s+ ++q+ + +l  
  MMETSP1061-20121228|7531_1 33 YDDDNYDNDNYDDDDDDGWDDVSDTSSQEAQRLLTT 68
                9***************************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 2202.33
//
Query:       MMETSP1061-20121228|7532_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1480.57
//
Query:       MMETSP1061-20121228|7534_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.58    5.5  29.8        0.7    5.2  20.7    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        1.2    5.2  13.4        1.3    5.0   9.3    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2  20.7   0.00034       0.7     768     909 ..     130     271 ..      58     289 .. 0.44

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00034
   TIGR00927 768 aegekdeesggeaeqegeseekaeeeseGeieaer.kgedegegeieakeaevkGeeeeeeveaeeetea..eGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGei.eaeedgevkGdeg 909
                 a++++++ +g+e+e+++e ee+++ +++ ++ +     e +  ++  +k+++++ +e +++v+++ee e+  + +edeg +ea+++  +++d+de++  +k+    +gd+d+ +  ++   e +e+ d  ++  a+ +++   de+
  MMETSP1061-20121228|7534_1 130 ADSDDSDDEGSESESDEEYEEVSKLKNKTKLASAAaAAEAAASSKKTTKRSKKNDDESADKVDESEEEEDwdDSSEDEGLAEAKKKTAKQNDKDEDDSMSKD--SDDGDDDDDDNSSD--QEDDEERDFVKTsAAKRNANYDDDEE 271
                 334444444455555555555555554444443320233333333334444444444444444443333311222333333333333333333333333322..22222222221111..11111111111102222222222222 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   9.3   0.00064       1.3     317     439 ..     140     273 ..      55     325 .. 0.50

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00064
   TIGR00934 317 s.............qqnltrlaktksfdd...skavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngn...kkdasksneseevsldseenayptyndeeeds 439
                 s              +n+t+la   +  +   s +++ +rsk +d  +a  ++e+++++d +++ e+        +   + +++  k  +k + ++ s+++   + +   + +  +  e+++  ++s  + ++ y d+ee+ 
  MMETSP1061-20121228|7534_1 140 SesesdeeyeevskLKNKTKLASAAAAAEaaaSSKKTTKRSKKNDDESADKVDESEEEEDWDDSSED--------EGLAEAKKKTAKQNDKDEDDSMSKDSDDGDDDdddNSSDQEDDEERDFVKTSAAKRNANYDDDEEEE 273
                 1233333322222212333333322222222233344445555555555555555555555444444........3333333333332222222222222211111100011111111222222222223444444444422 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       310  (0.0755729); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 1502.35
//
Query:       MMETSP1061-20121228|7537_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 635.95
//
Query:       MMETSP1061-20121228|7538_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|7536_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-84  280.1   0.0    6.7e-59  198.0   0.0    2.0  2  TIGR00308 TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
  ------ inclusion threshold ------
      0.014   12.7   0.1      0.031   11.6   0.1    1.5  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00308  TRM1: N2,N2-dimethylguanosine tRNA methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.3   2.6e-26   5.4e-23       1     105 [.      33     194 ..      33     199 .. 0.93
   2 !  198.0   0.0   3.3e-62   6.7e-59     109     371 ..     230     513 ..     218     517 .. 0.91

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 2.6e-26
   TIGR00308   1 vkeGkveikvP..kkeevfYnPrmkfnRDlsvvvikafdnlygkeck........................................................ieildalsasGiRaiRyakeiegvkevianDinPkavesiknnvklnsvenievineDaa 105
                 + eG++++ +P  +   vfYnP++  nRDls+++i  +++    +                                                          i++ldal+asG+R+iRy +ei+gvk+v +nD++  ave  k+n++ n+v+   vi +D+a
  MMETSP1061-20121228|7536_1  33 ITEGSAVMIFPanQESAVFYNPVQVQNRDLSILMISLYAERRAVRRAvqrkkkelskkrqaetdeekkmskeelnkelksyeesldgsqmlkdakekkdfndgITVLDALAASGLRSIRYWREIPGVKHVTINDLEQVAVERAKDNLRNNKVD-SSVILGDNA 194
                 579********666678****************99999887766655889999***************************************************************************************************9.677766665 PP

  == domain 2    score: 198.0 bits;  conditional E-value: 3.3e-62
   TIGR00308 109 rkrnrkfeviDiDPfGtpaPfvdsairaiakrglllvtatDtsaLcGsykkkclrkYganavkt.esthevaLRllvgfvkreaakYkkalepllslsidhYvRvylkvkrsakradkvleklgyllhcsrclhnkkvngiselkkr.............ckecggeldlaGPlyvGelkdkefieevlkiaeeke........ystrkrveklLeliknelsaspgayslneiakvlklsvPPlkkvvegLkelGfeaslthaqpssiktdadldaivevlqkl 371
                  k++  ++viD+DP+G+ aPf+d a++a +++gll++t+tD++aL Gs +++++ +Y++ ++++ ++  e aLR+l+  ++ +aakY ++++p+ls  +++YvRv++++ +  k + +     g ++  ++c     +   ++  k+             c+e g+ +++ GPl++G+l+d+++++ +lk+  ++          +tr r+++lL  + +el+++  +y ++ +++ l+ s PPlk+    + ++G+++s  h +p++iktda+ +++++++++ 
  MMETSP1061-20121228|7536_1 230 AKQQPMWDVIDLDPYGSAAPFLDGAVQAAENGGLLCITCTDMAALGGSHPETAYGRYASLPIQSaKYLQELALRILLHSIAVSAAKYGRTIRPILSVGMNFYVRVFVEIVNDKKGVSDLSLINGNVYQSTQCCSFVTISHGQKGGKNnngyqssrvepstCPETGAPFKVGGPLWLGPLHDQDVVKVALKRLANEMcespdmklIATRTRLQGLLTSVSEELDTPL-YYTIPGLCQALRCSSPPLKEFKGAIMNAGYRVSGYHKEPNAIKTDAPGHVVWDIMRDW 513
                 4567789******************************************************97626779**********************************************9999999999999999977555544333333368888999*******************************9999988887789999999*****************9987.*******************************************************975 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   1.5e-05     0.031     160     212 ..     134     189 ..     118     200 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.5e-05
   TIGR00406 160 d.kkviDvGcGSGiLsiaal..klgaakvvavDiDplavesarkNlelNqvsdllq 212
                 d  +v+D  + SG+ si       g++ v+  D++ +ave a++Nl+ N+v   + 
  MMETSP1061-20121228|7536_1 134 DgITVLDALAASGLRSIRYWreIPGVKHVTINDLEQVAVERAKDNLRNNKVDSSVI 189
                 336899999999999998751156***************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 2311.69
//
Query:       MMETSP1061-20121228|7533_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2807.31
//
Query:       MMETSP1061-20121228|7541_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2415.97
//
Query:       MMETSP1061-20121228|7539_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-21   74.3  24.1    2.3e-10   37.9   0.0    3.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    3.9e-11   41.0   0.0    9.2e-05   20.0   0.0    2.2  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
      4e-11   39.9   0.2    4.2e-08   29.9   0.0    3.0  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    0.00026   18.6   1.0      0.086   10.3   0.3    2.5  3  TIGR01659 sex-lethal: sex-lethal family splicing factor
  ------ inclusion threshold ------
       0.39    6.2  15.1       0.49    5.8  10.5    1.1  1  TIGR02102 pullulan_Gpos: pullulanase, extracellular
        2.1    4.4  12.2        2.6    4.0   8.5    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        3.8    2.8  20.7        4.9    2.4  14.3    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        3.8    3.6  19.0        5.1    3.2  13.1    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        4.5    3.6  19.0        6.1    3.2  13.2    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6  18.9   6.5e-10     3e-07       2     195 ..      81     257 ..      80     260 .. 0.75
   2 !   37.9   0.0     5e-13   2.3e-10     122     194 ..     305     378 ..     296     380 .] 0.94

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 6.5e-10
   TIGR01622   2 krdrereRsRdssreadrdrerdksrersRdrsrdRersr.skerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrekeerlkeelteeeRDartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqas 195
                 kr+++++R+ +ss++ d+d er+k+++++++++++R++ + + + d d+d+   ++    d  +++ +++ s  +++++++  +       +++    ++ +++     ++ + +       f  +l+  ++e  l+ F    g+v  ++ i D++ ++  G a++E  +  s   A+a++G kl g+Pv+++ +
  MMETSP1061-20121228|7539_1  81 KRSKKKKRKASSSNDDDDDEEREKKSKKKKKKDKKRQKTSgNGSDDDDHDE--GEGGAENDEAGNDNEEETSTADKNNNNN--N-------NNNTPTTSSADKN-----KPCKGNPQGVTRLFLGNLPFSVDESSLNAFLP--GQVTHIKWITDKETGKFYGSAFIEMDNSISASDAVAMAGSKLIGRPVKINFA 257
                 79999******99999*************9999999999944444454544..4444444444444444444333333332..1.......1222333333333.....3555555666679*****************85..9***********************************************9865 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 5e-13
   TIGR01622 122 vfvlqlalklreRdlkEFFskvg.kvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqa 194
                  f+ +l   +++  +  FF +v  +v+ vr ++ + S+  kGv++vEF + e+ +    l+G+ llg+P+ +  
  MMETSP1061-20121228|7539_1 305 LFIGNLSYDIDDEGIIKFFANVDaEVKAVRWLHHKDSGDFKGVGFVEFWNTEACERGATLNGKSLLGRPIRIDW 378
                 688999999*************87**********************************************9975 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.6e-07   0.00016     252     345 ..     165     257 ..      42     261 .. 0.80
   2 !   20.0   0.0     2e-07   9.2e-05     260     341 ..     293     375 ..     272     379 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 3.6e-07
   TIGR01661 252 avaglaagaqiaa.sdgagycifvynlspdtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfk 345
                  +++ a +++  + ++     +f+ nl    de+ l  f p G v+ +k i d +t k  G +f+ m n   a  a+ ++ G +l +r +++ f 
  MMETSP1061-20121228|7539_1 165 PTTSSADKNKPCKgNPQGVTRLFLGNLPFSVDESSLNAFLP-GQVTHIKWITDKETGKFYGSAFIEMDNSISASDAV-AMAGSKLIGRPVKINFA 257
                 2223333332222233334569*****************98.9*****************************99998.68999999998888875 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 2e-07
   TIGR01661 260 aqiaasdgagycifvynlspdtde.avlqlfgpfGa.vqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlq 341
                 + ++ ++ +   +f+ nls d d+  ++++f++  a v++v+ ++  ++   kG gfv   n +ea    ++lnG +l +r ++
  MMETSP1061-20121228|7539_1 293 KAMSVKPDSCLKLFIGNLSYDIDDeGIIKFFANVDAeVKAVRWLHHKDSGDFKGVGFVEFWN-TEACERGATLNGKSLLGRPIR 375
                 3344456677889********8761678*****9887999********************99.7899999******99888665 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1  16.8       3.7   1.7e+03      18     103 ..      81     168 ..      77     178 .. 0.57
   2 !   15.8   0.1   1.8e-06    0.0008     284     372 ..     171     256 ..     154     261 .. 0.80
   3 !   29.9   0.0   9.2e-11   4.2e-08     178     364 ..     185     370 ..     182     377 .. 0.80

  Alignments for each domain:
  == domain 1    score: -5.1 bits;  conditional E-value: 3.7
   TIGR01642  18 dkskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsr..krsssne 103
                 ++sk ++Rk s ++++d d +r+++ + ++k +++R++ + +  + ++ +e   ++  d+  +++ + +s + +++++   + +++ +
  MMETSP1061-20121228|7539_1  81 KRSKKKKRKASSSNDDDDDEEREKKSKKKKKKDKKRQKTSGNGSDDDDHDEGEGGAENDEAGNDNEEETSTADKNNNNNnnNNTPTTS 168
                 4799999999999999998888866666667777777777666665555555555555554444444444433333332002333222 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.8e-06
   TIGR01642 284 eklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkr 372
                 +k    k+ +++  +l++gnLP+ +++  +   L   G++   + i d +tG+  G aF+e ++s  +  A+ a+ G kl ++ +++ +
  MMETSP1061-20121228|7539_1 171 DKNKPCKGNPQGVTRLFLGNLPFSVDESSLNAFLP--GQVTHIKWITDKETGKFYGSAFIEMDNSISASDAV-AMAGSKLIGRPVKINF 256
                 355678999999*****************999996..9************************9988887776.5677777666665555 PP

  == domain 3    score: 29.9 bits;  conditional E-value: 9.2e-11
   TIGR01642 178 rlyvgniPpeakeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsiiyenvslkir....RphdYiPvpeatpev.sqknsdinlkavekl..vnsktvldsedklyignLPldlkddqvkeLLesF.GdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklg 364
                 rl++gn+P+ + e ++  F+  +++ +   + +++ ++           af+E+     a+ a+a+ +  + + ++ki+    R  d  P+p+   +   + ns+   ++ + +   +  + +ds  kl+ignL +d++d+ +     +   ++ka   +   + G  KG +F+e+ ++   +   a+LnG++l 
  MMETSP1061-20121228|7539_1 185 RLFLGNLPFSVDESSLNAFLPGQVTHIKWITDKETGKFY--------GSAFIEMDNSISASDAVAMAGSKLIGRPVKINfapaRDGDVWPPPKKVISGgGNGNSNTTGGQAGGTgvKAMSVKPDSCLKLFIGNLSYDIDDEGIIKFFANVdAEVKAVRWLHHKDSGDFKGVGFVEFWNTEACERG-ATLNGKSLL 370
                 8999***********999999998887766666454444........459***************************9655559999999997665440444555444444333434556779*******************99988776369*************************9999875.689998765 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.3   0.00019     0.086     107     253 ..     183     241 ..      93     264 .. 0.61
   2 !    9.7   0.0   0.00029      0.13     194     253 ..     184     241 ..     173     301 .. 0.84
   3 !    6.4   0.0    0.0028       1.3     195     250 ..     304     359 ..     286     371 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00019
   TIGR01659 107 gtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyarpggesikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeais 253
                  t l +  lp  + +  l a++   g +   + + d  tg  +g af+++   + +  a+                                                                                      +
  MMETSP1061-20121228|7539_1 183 VTRLFLGNLPFSVDESSLNAFLP--GQVTHIKWITDKETGKFYGSAFIEMDNSISASDAV--------------------------------------------------------------------------------------A 241
                 35555555555555555555442..44555555555555555555555555555444444......................................................................................3 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00029
   TIGR01659 194 tnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeais 253
                 t l++ nlp ++ +  l++ +   g++     + dk tgk  g af+ ++    a +a++
  MMETSP1061-20121228|7539_1 184 TRLFLGNLPFSVDESSLNAFLP--GQVTHIKWITDKETGKFYGSAFIEMDNSISASDAVA 241
                 88999*******999**99874..899999999**************9998888888875 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.0028
   TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqk.nilrdkltgkprgvafvrfnkreeaqe 250
                  l++ nl+  i d+ +   f      v+    l  k +g  +gv fv f   e a e
  MMETSP1061-20121228|7539_1 304 KLFIGNLSYDIDDEGIIKFFANVDAEVKAvRWLHHKDSGDFKGVGFVEFWNTE-ACE 359
                 5899****************9998777642789***************98765.444 PP

>> TIGR02102  pullulan_Gpos: pullulanase, extracellular
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8  10.5    0.0011      0.49     991    1088 ..      67     173 ..      23     191 .. 0.53

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0011
   TIGR02102  991 glkldpltavvvkvgekeasektapkkeeeseadkekkedkdeskdkdkvaeaenkesktpagskken.............eeveksskekkeekldkeaklpktaekssk 1088
                  ++kld+  ++ +   + + +++ a++++++ + ++++k++k+++k+++k ++++++ s +  +    +             ++ e++s  +k+++ +++++ p t++++++
  MMETSP1061-20121228|7539_1   67 KVKLDADGTISLLEKRSKKKKRKASSSNDDDDDEEREKKSKKKKKKDKKRQKTSGNGSDDDDH----DegeggaendeagnDNEEETSTADKNNNNNNNNNTPTTSSADKN 173 
                  467777655544333333333333333333333333333333333333333333333333222....12233555566665555566666677777888888988877766 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   8.5    0.0057       2.6     311     433 ..      42     162 ..       7     211 .. 0.39

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0057
   TIGR00934 311 ssiekns...qqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryak.ksdrneedngnkkdasksneseevsldseenayptyn 433
                  +i++     ++ +++ +++  +  + +v+l  + ti   e+++ ++  +a     + +++ ++ +r+kk+ kk+++++k  + s   + + d++e + g ++d++ + ++ee+s+ +++n++   n
  MMETSP1061-20121228|7539_1  42 LQIDESDkaaKKLFKKAVQNMEE--QGKVKLDADGTISLLEKRSKKKKRKAS----SSNDDDDDEEREKKSKKKKKKDKKRQKTSGNGSdDDDHDEGEGGAENDEAGNDNEEETSTADKNNNNNNNN 162
                 22222221112222222222211..222344444444444444333333333....22222222333333333333333322222222202222222222222222222222222222221111111 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4  14.3     0.011       4.9     792     872 ..      84     161 ..      31     183 .. 0.32

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.011
   TIGR00927 792 eeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeeveveg 872
                 ++++ +  + + ++d++e e ++   ++k +++++  ++++++ ++ d+dege+ ae++   +++e+e+    k++ + + 
  MMETSP1061-20121228|7539_1  84 KKKKRKASSSNDDDDDEEREKKS---KKKKKKDKKRQKTSGNGSDDDDHDEGEGGAENDEAGNDNEEETSTADKNNNNNNN 161
                 11111111111111111111111...1111112222222222222222222222222222222222222221111111111 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  13.1     0.011       5.1     311     389 ..      87     170 ..      57     185 .. 0.45

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.011
   TIGR02442 311 rrkpfeeeqekeekkleekkeeak.pdeekedes...eekekeeskkqe.....eeepgkddekeedekeeaeeeaesaeevalepag 389
                 +rk++ +++ ++++++e+k++++k +d++++++s   ++++++++   +     ++e g+d+e+e+ ++++++++++ ++++++++ +
  MMETSP1061-20121228|7539_1  87 KRKASSSNDDDDDEEREKKSKKKKkKDKKRQKTSgngSDDDDHDE---GeggaeNDEAGNDNEEETSTADKNNNNNN-NNNTPTTSSA 170
                 123333332233333333332222122222222222222222222...22234333444444444444444444333.3344443333 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2  13.2     0.013       6.1     179     292 ..      58     171 ..      29     184 .. 0.58

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.013
   TIGR01651 179 aiddqqafarvvrellaslelaeelgddeesedeedtdddqprede.qeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaetpgeakrpdrpftdlne 292
                 a+++ +   +v  +    + l e+ + +++ + ++ +ddd+ +e e ++++ ++++++ ++++ + ++  +++e +g  e  ea +d++++ + +d +   + ++++ p t+ ++
  MMETSP1061-20121228|7539_1  58 AVQNMEEQGKVKLDADGTISLLEKRSKKKKRKASSSNDDDDDEEREkKSKKKKKKDKKRQKTSGNGSDDDDHDEGEGGAENDEAGNDNEEETSTADKN-NNNNNNNNTPTTSSAD 171
                 44444555566666666677777777776555555555444444330334444444555555555566666666666666666666666666666665.4555666667666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       361  (0.0880059); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.37u 0.17s 00:00:00.54 Elapsed: 00:00:00.28
# Mc/sec: 1791.28
//
Query:       MMETSP1061-20121228|7540_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1624.48
//
Query:       MMETSP1061-20121228|7542_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.23
# Mc/sec: 2783.25
//
Query:       MMETSP1061-20121228|7544_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.46
# Mc/sec: 697.25
//
Query:       MMETSP1061-20121228|7545_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1791.85
//
Query:       MMETSP1061-20121228|7546_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.60
# Mc/sec: 1341.89
//
Query:       MMETSP1061-20121228|7547_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-60  202.5   0.1    2.5e-60  202.1   0.0    1.1  1  TIGR00549 mevalon_kin: mevalonate kinase
    4.2e-14   50.1   0.0    1.9e-10   38.0   0.0    2.1  2  TIGR00131 gal_kin: galactokinase
    1.7e-08   31.8   0.5    3.1e-05   21.0   0.0    2.9  2  TIGR01220 Pmev_kin_Gr_pos: phosphomevalonate kinase
    3.5e-07   27.2   0.2    1.3e-05   22.1   0.1    2.6  1  TIGR00191 thrB: homoserine kinase
     0.0011   16.3   0.1      0.093    9.9   0.0    2.4  2  TIGR01920 Shik_kin_archae: shikimate kinase


Domain annotation for each model (and alignments):
>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.1   0.0     3e-63   2.5e-60       1     276 []      63     353 ..      63     353 .. 0.85

  Alignments for each domain:
  == domain 1    score: 202.1 bits;  conditional E-value: 3e-63
   TIGR00549   1 apgKviLfGEHaVVYgepAiaaaiealttvtvie...........eskeislieselgrkslakvsqelsklle...syiaavlskleekkeaa.lkveieseipigaGLGSSAavavaliaalaalfg...selskeelaklaneaEkivhGkpSgiDtavvtyggvllfekdeg...eekllesldalslviadtgvsrsTkelVakVrellekfpeviksileaigelvkeakaaledkdveqlgelmninqglLkslgvShpkleqlvelarkagalgaKlTGaGgGGcvial 276
                 a gK+iLfGEH VVY  pA++ a+ a+t   ++            +    +   +e+ +++ a ++ +++k  e   + i+ vl+ ++   + + ++++  +++   +G+G+SAa +val++a+ + +     +l+++e++   +e+Ek  hG+pSgiD++ +t+gg+l+f++  +   +ek++++++ +++v a tg+ +sT e+V +Vr ++e+ p+ ++++l++  el+k+++ a+e++d  +lg+l+++n++lL++l+vS ++l+ lv++ar aga+gaK++G G+GG ++al
  MMETSP1061-20121228|7547_1  63 AYGKLILFGEHFVVYKVPALVGAVAAYTDCSIEVedapssdstddQ----ETGIVEVIDNRPAVPNYKTKKA-EegkKAIDLVLNHFKIFGKGKkATLTFGGTLCCASGIGASAAQVVALARAVKETLPerfGKLTEDEINTAGYEGEKGYHGTPSGIDNTAATFGGLLKFQRTDSdpiFEKKTIQEP-IRIVYASTGITSSTTEVVGDVRAKKEADPAWFDDLLQKYVELAKKGETAIEKGDIPELGKLLDENHKLLQDLTVSCKELDDLVAAARAAGAVGAKMSGTGRGGLMLAL 353
                 569**************************99988556544432211....1122223333333222222222.13555555566666555444448*****************************999877789**************************************9987888888888887.**********************************************************************************************************97 PP

>> TIGR00131  gal_kin: galactokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   7.6e-05     0.062      20     171 ..      61     216 ..      48     232 .. 0.80
   2 !   38.0   0.0   2.4e-13   1.9e-10     287     365 ..     293     366 ..     284     377 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 7.6e-05
   TIGR00131  20 vraPGRvnliGehiDYndgsvlPlaidvdtlvavkerddknvsitlanadnklaerkldlpldksevsdWanYvkgvlkvlqeRfnsvplG..ldivisgdvPtgaGLsssaalevavaavlk.nlgkle..ldskeillriqkveehfvGvncGgm 171
                  +a G+  l Geh        l  a+   t +++++ d    s  +++ +  + e+  + p + ++ ++ a   k ++  + + f+ +++G  + + + g +  ++G+ +saa  va+a  +k  l + +  l++ ei + + + e+ + G  +G+ 
  MMETSP1061-20121228|7547_1  61 THAYGKLILFGEHFVVYKVPALVGAVAAYTDCSIEVEDAP-SSDSTDDQETGIVEVIDNRPAVPNYKTKKAEEGKKAIDLVLNHFKIFGKGkkATLTFGGTLCCASGIGASAAQVVALARAVKeTLPERFgkLTEDEINTAGYEGEKGYHGTPSGID 216
                 4588999999***999899999999999999999876654.45566788889***99999***************************999733678999********************88884555554114445556667777888888887763 PP

  == domain 2    score: 38.0 bits;  conditional E-value: 2.4e-13
   TIGR00131 287 kllkdedlkelGkLmnesqasldddyeitvpeidelvesialvnGsiGsRltGaGfGGCtvalvpnenvekvrkalaek 365
                  +++++d+ elGkL++e ++ l+d   +++ e+d+l +++a + G +G+++ G+G GG ++al p e++++   a+ae 
  MMETSP1061-20121228|7547_1 293 TAIEKGDIPELGKLLDENHKLLQD-LTVSCKELDDL-VAAARAAGAVGAKMSGTGRGGLMLALTPTEEIQN---AVAEA 366
                 567899*************98876.58*******55.5677789*********************877653...33333 PP

>> TIGR01220  Pmev_kin_Gr_pos: phosphomevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00042      0.34     117     188 ..     165     239 ..      59     251 .. 0.69
   2 !   21.0   0.0   3.7e-08   3.1e-05     214     338 ..     244     363 ..     236     372 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00042
   TIGR01220 117 yGlGssgavtvatvkalnafydl...elsneeifklavlatlelqskgscGdiaasvygGWiaystfdrdfvkqk 188
                  G+G+s+a +va  +a+++       +l ++ei       +   ++  s+ d +a+++gG + ++  d d + +k
  MMETSP1061-20121228|7547_1 165 SGIGASAAQVVALARAVKETLPErfgKLTEDEINTAGYEGEKGYHGTPSGIDNTAATFGGLLKFQRTDSDPIFEK 239
                 489************9998765322368899999999999999***********************999977655 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 3.7e-08
   TIGR01220 214 knlelliGWtGsPastadlvsevkrrkeeksaayerfleksrdcveslitaletgdiksvqkeirknrqllarlddevgvdieteklkalcdlaeaygga.akssGaGGGdcGiaildakaditrv 338
                 + +++    tG  +st+++v +v+ +ke + a ++ +l+k  +  ++  ta+e gdi  + k + +n +ll++l      ++  ++l  l  +a a g+  ak sG+G G   +a+   +   + v
  MMETSP1061-20121228|7547_1 244 EPIRIVYASTGITSSTTEVVGDVRAKKEADPAWFDDLLQKYVELAKKGETAIEKGDIPELGKLLDENHKLLQDL------TVSCKELDDLVAAARAAGAVgAKMSGTGRGGLMLALTPTEEIQNAV 363
                 5567777889*************************************************************986......4677899999999998887449******998888877666555555 PP

>> TIGR00191  thrB: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   1.5e-08   1.3e-05      81     286 ..     153     376 ..      99     380 .] 0.71

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.5e-08
   TIGR00191  81 vkltvekeiplgrGLGSSaaaivaaviaanelaglklsk..eelldlalllEg........HpDNvapallGGlqlavkedd....llevlkvPsgsklkvvlviPnievsTaea.RavLPkays....rqdlvfnlshlavl.vtAlvskdkadllaiamkDrvhqpyRekliPelteikqaakekgalgitlSGaGpt..ilalaeeek.eekaqelleklakegie 286
                   lt    +  ++G+G Saa +va + a++e + + + k  e+ +++a+++ +          DN ++a +GGl    + d     + +++++P    + +v +  +i  sT e   +v  k+        dl+++  +la    tA+ ++d ++l++++ + +      +    el+++  aa+++ga+g  +SG+G    +lal+  e+ ++ ++e+lek+a ++ +
  MMETSP1061-20121228|7547_1 153 ATLTFGGTLCCASGIGASAAQVVALARAVKETLPERFGKltEDEINTAGYEGEkgyhgtpsGIDN-TAATFGGLLKFQRTDSdpifEKKTIQEP----IRIVYASTGITSSTTEVvGDVRAKKEAdpawFDDLLQKYVELAKKgETAIEKGDIPELGKLLDENHKLLQDLTVSCKELDDLVAAARAAGAVGAKMSGTGRGglMLALTPTEEiQNAVAEALEKIAPQVWK 376
                 445555677889**********************999873356778877653359*888777899.6678999865555555565555556666....99*****99999998752345444432111134666665555543158999999999999985543333333344568999999*************9876522777777777677778888888777665 PP

>> TIGR01920  Shik_kin_archae: shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00011     0.093      31     106 ..     115     189 ..     109     226 .. 0.80
   2 !    3.9   0.1    0.0074       6.1     221     260 ..     327     366 ..     321     377 .. 0.67

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00011
   TIGR01920  31 lsdgeakvslkvreeeeldpelierilealieklgikegleveveseiPagsGLksSsAlvnAlvlavlkakgeei 106
                 ++d ++ v  +  ++ e   + i+ +l+++ + +g ++++++   + +  +sG+ +S+A v+Al+ av++ + e+ 
  MMETSP1061-20121228|7547_1 115 VIDNRPAVPNYKTKKAEEGKKAIDLVLNHF-KIFGKGKKATLTFGGTLCCASGIGASAAQVVALARAVKETLPERF 189
                 555556666666666656677777777665.57888889*****************************99887765 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0074
   TIGR01920 221 paekalekGAavaglsGkGPsyvalteepeeevaealeea 260
                 ++  a  +GA+ a +sG+G   + l+  p ee+++a  ea
  MMETSP1061-20121228|7547_1 327 LVAAARAAGAVGAKMSGTGRGGLMLALTPTEEIQNAVAEA 366
                 56778889**99*999998876666555555555444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1729.51
//
Query:       MMETSP1061-20121228|7543_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-143  475.7  11.3   4.6e-143  474.2   7.8    1.6  1  TIGR02056 ChlG: chlorophyll synthase ChlG
   5.6e-104  345.4   3.7   6.7e-104  345.1   2.6    1.1  1  TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
    3.7e-13   47.4   0.0    5.1e-13   46.9   0.0    1.1  1  TIGR01475 ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
    8.8e-07   26.5   1.2    1.8e-06   25.5   0.8    1.5  1  TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase
    4.8e-06   23.9   0.5    0.00015   19.0   0.9    2.2  2  TIGR02235 menA_cyano-plnt: 1,4-dihydroxy-2-naphthoate phytyltransferase
    2.7e-05   21.9   0.2    7.2e-05   20.5   0.2    1.9  1  TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase


Domain annotation for each model (and alignments):
>> TIGR02056  ChlG: chlorophyll synthase ChlG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.2   7.8  6.8e-146  4.6e-143       1     306 []      78     397 ..      78     397 .. 0.96

  Alignments for each domain:
  == domain 1    score: 474.2 bits;  conditional E-value: 6.8e-146
   TIGR02056   1 qllgikgaapqetskwkirlqltkpvtwiplvwgvvcgaaasgnytw..............sledvlkailcmllsgplltgytqtlndfydreidainepyrpipsgaisvpevvtqvvllllaglavafildlwaghetptvtvlalfgsllayiysapplklkqngwlgnyalgasyialpwwagqalfgeltpdv.vvltllyslaglgiaivndfksvegdralglqslpvafgietakwicvvaidvtqllvaayllaigknlyalilvlliipqivfqdkyflkdplkydvkyqasaqpflvlgilvaalalqh 306
                 qllg++ga  +  ++wkirlqltkpvtwipl+wgv+cgaaasgny+w               led +kai++m+l+gp ltgytqt+nd+ydr+idainep rpipsgai++ +v+ q+++lll+gl++++ ld+w+ he+p  + la+fgs+++yiysapplklkqngw gnyalgasyi+lpww+gqa+fgel+  v  vl +lys+aglgiaivndfks+egdra+gl+slpvafg++ a+ ic + + +tq  vaayl +ig+++ya++l++l++pq+ fq   +l dp+ +dvkyqas+qpflv+gil ++l+l+h
  MMETSP1061-20121228|7543_1  78 QLLGVRGAE-KTDDIWKIRLQLTKPVTWIPLLWGVMCGAAASGNYHWiwnpfdpndrnvllGLEDTAKAITAMILAGPFLTGYTQTINDWYDRDIDAINEPDRPIPSGAIAERDVIVQIWVLLLGGLGLSYGLDVWCDHEFPINLALAVFGSFISYIYSAPPLKLKQNGWAGNYALGASYISLPWWCGQAVFGELDRPVfWVLPVLYSIAGLGIAIVNDFKSIEGDRAMGLNSLPVAFGVDGAAKICAGSVTITQFGVAAYLFSIGESVYAAVLMALLLPQVYFQATLLLPDPIENDVKYQASSQPFLVFGILATCLCLGH 397
                 8*******9.8889********************************95555544444333337999*********************************************************************************************************************************9776269*******************************************************************************************************************9998 PP

>> TIGR01476  chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.1   2.6  9.8e-107  6.7e-104       1     282 [.      93     395 ..      93     396 .. 0.97

  Alignments for each domain:
  == domain 1    score: 345.1 bits;  conditional E-value: 9.8e-107
   TIGR01476   1 rarleLikPvtWiapiwavlCGavasGalrgs..............vekflklLlgmllaGPlltGlsqavndyaDrdvDainePqrpiPsGaislrevlililvltvlglavalvlgrwv......ivlltvlGvvlaliyslePiklkrngWlGnalvalsyvglaWlaGhavfaaltl.eivvvaLlyslaaaGilvlnDfksveGDrklGlrslpvalGvkvaaklavvvidvaqilvigllliwgkqlvativlllLvaqiiaqaklflrdpeenevkynatavpllvlgmlvaalal 282
                 ++rl+L kPvtWi+++w+v+CGa+asG +++                e+  k++++m+laGP+ltG++q++nd++Drd+DaineP+rpiPsGai+ r v+++i vl++ gl++++ l++w        + l+v+G ++++iys++P+klk+ngW Gn+++++sy++l+W++G+avf+ l      v+ +lys+a++Gi+++nDfks+eGDr +Gl+slpva+Gv+ aak++   + + q  v+++l+ +g+ ++a+++++lL++q+++qa+l+l dp en+vky+a+++p+lv+g l++ l l
  MMETSP1061-20121228|7543_1  93 KIRLQLTKPVTWIPLLWGVMCGAAASGNYHWIwnpfdpndrnvllgLEDTAKAITAMILAGPFLTGYTQTINDWYDRDIDAINEPDRPIPSGAIAERDVIVQIWVLLLGGLGLSYGLDVWCdhefpiNLALAVFGSFISYIYSAPPLKLKQNGWAGNYALGASYISLPWWCGQAVFGELDRpVFWVLPVLYSIAGLGIAIVNDFKSIEGDRAMGLNSLPVAFGVDGAAKICAGSVTITQFGVAAYLFSIGESVYAAVLMALLLPQVYFQATLLLPDPIENDVKYQASSQPFLVFGILATCLCL 395
                 689************************9999888*********9999**************************************************************************9999976889***********************************************8751567999***************************************************************************************************************9987 PP

>> TIGR01475  ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   7.5e-16   5.1e-13      47     238 ..     155     354 ..     136     380 .. 0.85

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 7.5e-16
   TIGR01475  47 saRtaamavnrlideeiDakNPRtknrelvsGkiskkeavtliilslilfliasyflNkla.......fiLspvvllvliiypy....lKRftalahlvLglvlglavlagavavigeisillvavllvigvvfwvagfDliyaiqDlefDkknglksiparfGvkaalkiaslshvitvvlllllgllvkegklallallli 238
                 ++     ++n   d++iDa N    +r+++sG+i +++++  i + l+  l  sy l  ++       ++L++   ++ +iy++    lK   +  ++ Lg  +   +     av ge++   v ++l +  ++   g  +++  + +e D+++gl+s+p+ fGv  a ki + s +it   +++  + ++e++ a +++ l 
  MMETSP1061-20121228|7543_1 155 FLTGYTQTINDWYDRDIDAIN--EPDRPIPSGAIAERDVIVQIWVLLLGGLGLSYGLDVWCdhefpinLALAVFGSFISYIYSApplkLKQNGWAGNYALGASYISLPWWCGQAVFGELD-RPVFWVLPVLYSIAGLGIAIVNDFKSIEGDRAMGLNSLPVAFGVDGAAKICAGSVTITQFGVAAYLFSIGESVYAAVLMALL 354
                 55556678999**********..579****************999999999*******999888777789999999******85444489*******************999********.56999999999999999*****************************************999999999999855554444433 PP

>> TIGR01474  ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.8   2.6e-09   1.8e-06      38     251 ..     141     364 ..      92     381 .. 0.66

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.6e-09
   TIGR01474  38 palllLll.ftvGallmrgaGCviNDlvDrdlDkkVeRtksRPlasgavsvkqalllllvlllvalgvllllnklt.......illgvaslalvliY...Pl.lKRitylpQlvLglafswgvllgfaavagklstaaivLylasilWtl...gYDTiyamqDkedDakigvkstallfgdktksvlailyaltilllalagliaglgavyylalavaall.lvsqiakl 251
                 ++++ +++ +++G +l  g   +iND  Drd+D+  e    RP++sga+ ++  ++ + vlll +lg+   l+  +       ++l+v++ ++ +iY   Pl lK   +    +Lg+++         av+g+l+  +   ++  +l+++   g   +  ++ +e D+ +g++s  ++fg    + +++   +ti+ + +a+   ++g   y+a+++a+ll +v+ +a+l
  MMETSP1061-20121228|7543_1 141 DTAKAITAmILAGPFL-TGYTQTINDWYDRDIDAINE--PDRPIPSGAIAERDVIVQIWVLLLGGLGLSYGLDVWCdhefpinLALAVFGSFISYIYsapPLkLKQNGWAGNYALGASYISLPWWCGQAVFGELDRPVF--WVLPVLYSIaglGIAIVNDFKSIEGDRAMGLNSLPVAFGVDGAAKICA-GSVTITQFGVAAYLFSIGESVYAAVLMALLLpQVYFQATL 364
                 4444444404445554.577789**********9655..79************99999999999999888887544222222267788888888888553333577777888889988844333344678888776543..6666666551114455555666899**************876555544.4567778888888888888888888777654144444554 PP

>> TIGR02235  menA_cyano-plnt: 1,4-dihydroxy-2-naphthoate phytyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.037        25     169     230 ..      51     112 ..      20     117 .. 0.83
   2 !   19.0   0.9   2.2e-07   0.00015      89     243 ..     197     357 ..     141     365 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.037
   TIGR02235 169 lvGlattliLfcshfhqvedDkaagkkspvvrlGtkraakivtwvvlllyvvlllavilgll 230
                 ++ +  +++L ++   + ++D  ag + ++   G++++  i    + l+  v+++++++g++
  MMETSP1061-20121228|7543_1  51 AIDVESSTVLEAKGTSKKAEDGSAGVRQLLGVRGAEKTDDIWKIRLQLTKPVTWIPLLWGVM 112
                 4556778888899999999***************************************9976 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 2.2e-07
   TIGR02235  89 iLliGlvvi.lalssraq...itvlalvllaifLGylyqGPPfrLgykGL.GellcllafGPlaiaaallaqsqslslillkaailvGlattliLfcshfhqvedDkaagkkspvvrlGtkraakivtwvvlll.yvvlllavilgllPvtvllalaslPl 243
                 +Ll+G +++   l  +        lal + + f+ y y  PP +L  +G  G++    ++  l   +   +  +      +   +l  +a   i  +++f  +e D+a+g +s+ v +G + aaki   +v+++ ++v +    +g   + ++l+   lP+
  MMETSP1061-20121228|7543_1 197 VLLLGGLGLsYGLDVWCDhefPINLALAVFGSFISYIYSAPPLKLKQNGWaGNYALGASYISLPWWCGQAVFGELDRPVFWVLPVLYSIAGLGIAIVNDFKSIEGDRAMGLNSLPVAFGVDGAAKICAGSVTITqFGVAAYLFSIGESVYAAVLMALLLPQ 357
                 455555544134555544222345899999*******************6366666677888888888888888999999***********99**********************************9998764277777777677777777776666665 PP

>> TIGR01473  cyoE_ctaB: protoheme IX farnesyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.1e-07   7.2e-05       4     117 ..      96     230 ..      93     394 .. 0.63

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.1e-07
   TIGR01473   4 lqltKprlislvlltalagmllasksae..................vnlllllltllgttlaaasanalNmvidrdiDkkMkRTknRplvsgkvspseala..fglllgvlgvvl.Lallvn...llaallvlagifl 117
                 lqltKp  ++ +l+ +++g++ + +  +                    +  + +++l++ +  + ++++N ++drdiD++ +   +Rp++sg + ++ +++  + lllg lg++  L ++     ++  +l+++g f+
  MMETSP1061-20121228|7543_1  96 LQLTKPVTWIPLLWGVMCGAAASGNY-HwiwnpfdpndrnvllgleDTAKAITAMILAGPFLTGYTQTINDWYDRDIDAINE--PDRPIPSGAIAERDVIVqiWVLLLGGLGLSYgLDVWCDhefPINLALAVFGSFI 230
                 57777777777777777776655443.3466677777777777665445568888999999999***************965..79***********98861155555555554332222220112333344444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1473.88
//
Query:       MMETSP1061-20121228|7549_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 1472.88
//
Query:       MMETSP1061-20121228|7548_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1089.97
//
Query:       MMETSP1061-20121228|7552_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.18
# Mc/sec: 909.26
//
Query:       MMETSP1061-20121228|7550_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-13   47.3   0.1    5.8e-10   37.2   0.0    2.3  2  TIGR02072 BioC: biotin biosynthesis protein BioC
    8.6e-10   36.1   0.0    6.2e-07   26.8   0.0    2.5  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    0.00049   17.3   0.0     0.0011   16.2   0.0    1.5  1  TIGR00477 tehB: tellurite resistance protein TehB
     0.0005   17.4   0.0     0.0011   16.3   0.0    1.6  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0042   14.4   0.0     0.0074   13.5   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0     7e-13   5.8e-10      32     190 ..     157     325 ..     141     351 .. 0.90
   2 !    7.8   0.0   0.00069      0.57      34     132 ..     495     593 ..     487     597 .. 0.77

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 7e-13
   TIGR02072  32 kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.......nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGll.afstfgketlkElrqlfkqv.ea.hglrflsleelkallkkefellkleeelitlsFedvle 190
                 +  + kv+d+GcG G      +kr+p+ +++   isee+++++++kl+        +++ + d+   +  k s+D+i+S  al   ++ +++++e  ++l+pgG++ ++ +++++ +   ++ +++  ++  ++   s +e+++l k+ f l  +e++    ++e v+ 
  MMETSP1061-20121228|7550_1 157 SSSKLKVFDAGCGLGSALMFFEKRHPDWDMTGHTISEEQHRFVETKLPkhnfqvnLRSYDEIDATDSNNKKISYDVIYSIEALIHSSNITHTMKEWVDHLEPGGIVvIIDDYVSDGVDKHHDDIQAFsKSwLANVLISPTEFEELAKDVFGLKMVENRDLLAEYEIVKR 325
                 456689******************************************9988877678889999999999999*******************************8725689**************888778**********************9999999999987765 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00069
   TIGR02072  34 epakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkklsnvqficgdieklplekks.fDlivSnlalQWlddlsevlaelarvlkpgGllaf 132
                 e+ + LdiG GtG + + + k  ++ + +a  + + +l   + ++    ++  di  +p ++   fD+ +S  +l  ++ + + ++ +ar++k+gGl ++
  MMETSP1061-20121228|7550_1 495 ERGRFLDIG-GTGSTASGMTKVTSKFQHFAGPLEYWKLDSDQAAKDLERTLFCDIDDCPAAETCgFDVTFSHTVLEHAKRPWKSFDTIARITKSGGLTMH 593
                 556788888.8888888777777777766655555555555544444567777899999777767*******************************9875 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.0   7.6e-10   6.2e-07      42     151 ..     145     264 ..     129     266 .. 0.74
   2 !    6.6   0.0    0.0011      0.91     101     149 ..     543     591 ..     471     594 .. 0.71

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 7.6e-10
   TIGR01983  42 kkne.......kkleglkvlDvGcGgG..llseslarlgaevtgiDlseelievAklhakkdplk..kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilfl 151
                 ++ +       ++ ++lkv D GcG G  l+     +  +++tg  +see+ +  +++  k++ +    +y   ++ + +++ k s+Dv+ ++E l H +++++ +ke +++l+pggi+++
  MMETSP1061-20121228|7550_1 145 TTTQsalssssSSSSKLKVFDAGCGLGsaLMFFEKRHPDWDMTGHTISEEQHRFVETKLPKHNFQvnLRSYDEIDATDSNNK-KISYDVIYSIEALIHSSNITHTMKEWVDHLEPGGIVVI 264
                 3333233333366679********9883344444445567899988888887777776666666532557888888888777.778********************************987 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0011
   TIGR01983 101 yelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggil 149
                    +++++  ++e+  fDv  +  vlEH + + +   ++a+++k+gg +
  MMETSP1061-20121228|7550_1 543 TLFCDIDDCPAAETCGFDVTFSHTVLEHAKRPWKSFDTIARITKSGGLT 591
                 4567899999999999**********************99999999975 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.3e-06    0.0011      55     176 ..     142     266 ..     130     286 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.3e-06
   TIGR00477  55 kyeltathsevleavkvvapcktldlGcGqGrnslylsla..Gydvdavdkneasiasveeikekenldlrtavyd.inaaalde...dydfilstvvllfleaervpeiianmkehtkpGGynliva 176
                 k+  t+t s++  +    +  k++d GcG G   +++      +d++    +e    +ve    k n++++ + yd i+a   ++    yd i s   l+  ++ ++ + +++  +h +pGG  +i+ 
  MMETSP1061-20121228|7550_1 142 KH-HTTTQSALSSSSSSSSKLKVFDAGCGLGSALMFFEKRhpDWDMTGHTISEEQHRFVETKLPKHNFQVNLRSYDeIDATDSNNkkiSYDVIYSIEALI--HSSNITHTMKEWVDHLEPGGIVVIID 266
                 44.467899999999999******************987622577777788999999***9999***999999998555554443222699999988776..67899999************999886 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-06    0.0011      84     162 ..     154     235 ..     123     262 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.4e-06
   TIGR03534  84 l.kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdlleal...eekgkfdlivs 162
                   ++++klkv+D g+G G   +   k+ pd+++++  isee  +  +  + +++ + v++   d ++a+   ++k ++d+i s
  MMETSP1061-20121228|7550_1 154 SsSSSSKLKVFDAGCGLGSALMFFEKRHPDWDMTGHTISEEQHRFVETKLPKHNFQ-VNLRSYDEIDATdsnNKKISYDVIYS 235
                 23444589***********************************************9.999999999998655666669*9988 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     9e-06    0.0074      13     133 ..     118     244 ..     113     258 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9e-06
   TIGR02021  13 aferWa..ritsdeevsrvrqtvreGreamrekllewlpkdslkGkkvlDAGCGtGllsielAkr..GaivkavDiseklvelarkraekedeaenv....eFevndleslegkfDavvalDvlihYpa 133
                 a++rW   + + +e+ + + + v + + +++  +l+  +  s +  kv DAGCG G   + + kr     +++  ise+     +++++k++ + n+    e    d ++ +  +D++ ++++lih ++
  MMETSP1061-20121228|7550_1 118 AVHRWMgpKRSTEEHYELIDRAVAKHHTTTQ-SALSSSSS-SSSKLKVFDAGCGLGSALMFFEKRhpDWDMTGHTISEEQHRFVETKLPKHNFQVNLrsydEIDATDSNNKKISYDVIYSIEALIHSSN 244
                 6778862233446666777777776665555.55555553.47889*********988777777722467889999998888888888887766564211234555666666789*********99654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 3120.60
//
Query:       MMETSP1061-20121228|7555_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    7.0   6.9          2    6.6   4.8    1.5  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   4.8   0.00049         2      65      94 ..       4      31 ..       1      59 [. 0.55

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00049
   TIGR03685 65 aaaaaaaaeaaeeekeeeeeeeeekeeeee 94
                aaaaaa ++++e+e+++++  + e ++ee+
  MMETSP1061-20121228|7555_1  4 AAAAAAVTTNNESESKNKN--QSETGNEED 31
                2222222222222222222..222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1061-20121228|7554_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.4   0.0      0.049   10.8   0.0    1.2  1  TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR01019  sucCoAalpha: succinate-CoA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.2e-05     0.049      47      91 ..      15      61 ..       4      75 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.2e-05
   TIGR01019 47 lglpvfdsvkeave..etganasvifvPapfakdaileaidaeieli 91
                  lp+f +++ a e  + + ++++i  P+ fa+d    a +a+i++ 
  MMETSP1061-20121228|7554_1 15 RTLPLFSTLQTALEcaNEDFHIAIIACPPQFAQDHAQTALEAGINVF 61
                5699****99998732568899**********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1491.48
//
Query:       MMETSP1061-20121228|7557_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 740.29
//
Query:       MMETSP1061-20121228|7551_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.7e-236  782.3  18.2   6.5e-236  782.1  12.6    1.0  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   1.3e-174  579.8  11.3   1.6e-174  579.5   7.8    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    9.1e-13   45.8   3.0    1.3e-12   45.3   0.6    1.9  2  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    5.4e-11   40.2   1.1      6e-08   30.3   0.3    3.2  3  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    0.00054   16.4   0.0     0.0011   15.4   0.0    1.5  1  TIGR01312 XylB: xylulokinase
     0.0057   13.8   3.1      0.017   12.3   0.0    2.8  4  TIGR03706 exo_poly_only: exopolyphosphatase
  ------ inclusion threshold ------
        7.8    3.7  13.0      0.064   10.5   0.3    2.3  2  TIGR01597 PYST-B: Plasmodium yoelii subtelomeric family PYST-B


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  782.1  12.6  1.1e-238  6.5e-236       2     595 ..      31     638 ..      30     639 .. 0.95

  Alignments for each domain:
  == domain 1    score: 782.1 bits;  conditional E-value: 1.1e-238
   TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen..evkvevedk..eytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqggvlkge....vkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsititas.sglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeag....dkleeeekekiekaveelkealkeedveek..ikakteelekaleklaealy 595
                 +iGidLGtt s+v v++ g+ ++ian +G+r tPs+vaf ++ erlvG++ak+qa +npent++ +krliGrk++   v++++k vpy++v+ ++  +++v+v++k  +y+pee+sa+iLqk+k++ae +lG+++++av+tvPayfndaqrqatkdaG+i+G++v+riinePtaaa+ayG+dk+  + ++lvfdlGGGtfdv++l ++ gvfev++t+Gdt+LGG+dfd+++++y+++ +kk+++id+s dk alq+l+++ e+ k  Lss++++++++  ++       +l+++ltra+feel +dl+++t+ pv ++++da+ls+seide++lvGGstriP+vq+l+ e++g kep+k++nPde+va Gaa+qgg+l+ge     +++lLldvtPLs giet+Ggv+tkli+r ttiPtkksq+fst +dnq+ v i+v+ Ger++++d ++lg+feLtgippaPrGvpqievtf++danGil+vsa+dk+tgk ++itita+ + ls+eeiermv+eae++aeedkk ke+++arn ++s++y+ +++l++ +    d++++e+k++++++++e  + ++e+  ++k   ++k++e+e+ ++ +++++y
  MMETSP1061-20121228|7551_1  31 VIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFLDNTERLVGDAAKNQATINPENTVFDVKRLIGRKFSdkSVQADKKLVPYDIVSDKDkpMIQVTVAGKksKYAPEEVSAMILQKMKSTAETFLGKDIKNAVVTVPAYFNDAQRQATKDAGTISGMKVERIINEPTAAAIAYGMDKTGGEANVLVFDLGGGTFDVTLLTIDSGVFEVLATNGDTHLGGEDFDQRVMQYFIKMMKKKSDIDISGDKRALQKLRKEVERVKRALSSQQQARLEIEELA----DGYDLSETLTRARFEELNNDLFKKTMGPVARVMEDADLSKSEIDEIVLVGGSTRIPKVQQLIAEYFGgKEPSKGINPDEAVAYGAAVQGGILSGEggdaTSEILLLDVTPLSQGIETVGGVMTKLINRGTTIPTKKSQTFSTHQDNQSVVMIQVYEGERSMTKDCHNLGKFELTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKAEKITITAEkGRLSDEEIERMVNEAEQYAEEDKKIKERIDARNGLESYLYNLKNNLEDDEkgiaDNISAEDKKELQDMIDETIDWMDENPEADKedYDEKMKEVEQIANPIMRNVY 638
                 8************************************************************************98667999**********988757677777766337************************************************************************************************************************************************************************988665....3468************************************************************9988*************************997777788*****************************************************************************************************************975267********************************************98752233678999**********998888776443322499999999999999988776 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  579.5   7.8  2.7e-177  1.6e-174       1     580 [.      31     633 ..      31     639 .. 0.91

  Alignments for each domain:
  == domain 1    score: 579.5 bits;  conditional E-value: 2.7e-177
   TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleegkvevGkeakeaaaedpkntiisvkRlmGr..sledvkkeaeelpyeledakge.mvrlktaqg..evtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldk.aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil....kkagleaelskeekkellkaaraakeaLtdaeevevevkl..egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFk.kepltdldPdevvAlGAalqadlLakn..krkedllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsyg.LsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadkd....Llseeelkaikaaleklekale...eddaeaikaaiealeeaskef 580
                 ++GiDlGtt+s v + ++g++e++ +++g+ + ps v +l++ +  vG++ak++a+ +p+nt+  vkRl+Gr  s + v++ ++  py+++++k++ m+++++a +  + +P evsa iL+k+k+ ae+ lgk++k+av+tvPAYF+daqrqatkdA+ ++g++v R++nePtaAA+AYG+dk   e  ++v+DLGGGtFDv +L +++GvFevlat Gd++LGG+DfD++++++++    kk++++ + +k   ++l k+++++k+aL++++++++e++   +g dl+ +l+r+++eel ++l kkt+ +v r+++da+l+++ei+e+vlvGGstr+p+v+q +ae+F+ kep + ++Pde vA GAa+q  +L+++  +++ ++lLlDv+PLs G+et+GG++ k+i R ttiP++k+q F t++D+q+ ++i+v  GeR + +dc+ L++FeL gipp + G+ +i+vtf+vDa+G+l+vsa++k tg+ +ki++    g Lsdeeie+m++++ ++aeeD++ + + +++   e  l  l++ l++d++     +s+e++k+++  +++  + ++   e d e+ +++++++e+ ++ +
  MMETSP1061-20121228|7551_1  31 VIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFLDNTERLVGDAAKNQATINPENTVFDVKRLIGRkfSDKSVQADKKLVPYDIVSDKDKpMIQVTVAGKksKYAPEEVSAMILQKMKSTAETFLGKDIKNAVVTVPAYFNDAQRQATKDAGTISGMKVERIINEPTAAAIAYGMDKtGGEANVLVFDLGGGTFDVTLLTIDSGVFEVLATNGDTHLGGEDFDQRVMQYFIkmmkKKSDIDISGDKRALQKLRKEVERVKRALSSQQQARLEIEElaDGYDLSETLTRARFEELNNDLFKKTMGPVARVMEDADLSKSEIDEIVLVGGSTRIPKVQQLIAEYFGgKEPSKGINPDEAVAYGAAVQGGILSGEggDATSEILLLDVTPLSQGIETVGGVMTKLINRGTTIPTKKSQTFSTHQDNQSVVMIQVYEGERSMTKDCHNLGKFELTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKAEKITITAEKGrLSDEEIERMVNEAEQYAEEDKKIKERIDARNGLESYLYNLKNNLEDDEKgiadNISAEDKKELQDMIDETIDWMDenpEADKEDYDEKMKEVEQIANPI 633
                 59**********************************************************************4445669999999*****876664277766654444789************************************************************************77899*********************************************9998555566667777788888899999999************999755799****************************************************************6489**********************9661155669*****************************************************************************************************************987644**********************************************98622225778888888877776655554111457777788888888877765 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.17        97       5      66 ..      32      88 ..      29      95 .. 0.68
   2 !   45.3   0.6   2.1e-15   1.3e-12      96     303 ..     160     378 ..     127     402 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.17
   TIGR00904  5 lgidlGtantlvyvkgkGivlsePsvvavekdkdakaksvlavGkeakemlgktPenikair 66
                +gidlGt+   v v ++G v     ++a ++++   + s +a+  ++ +++g + +n ++i 
  MMETSP1061-20121228|7551_1 32 IGIDLGTTYSCVGVFKNGRV----EIIANDQGN-RITPSYVAFLDNTERLVGDAAKNQATIN 88
                89******999988888866....466665553.5555566666666666666666655555 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 2.1e-15
   TIGR00904  96 llkpk...vlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveeptgs.mvvdiGGGttevavislg.Giv....vsksirvaGdeldeaiiky....irrkynl.liGerta.ekikieiGsayaeen.deeeklevkGrdlvtGlprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllske 303
                 +l +     +++vP+   + +r+a k++ + +G +   +i+ep aaai  ++  +   ++ +v d+GGGt +v+++++  G+     +     ++G+++d+ +++y    +++k ++ + G++ a +k+++e+  ++   + +++ +le+  ++l+ G   +++l+  +  e  ++  ++ +  v +++e++  +l++  ++  ivl GG + +  +++l+ + 
  MMETSP1061-20121228|7551_1 160 FLGKDiknAVVTVPAYFNDAQRQATKDAGTISGMKVERIINEPTAAAIAYGMDKTGGEANvLVFDLGGGTFDVTLLTIDsGVFevlaTNGDTHLGGEDFDQRVMQYfikmMKKKSDIdISGDKRAlQKLRKEVERVKRALSsQQQARLEI--EELADGYDLSETLTRARFEELNNDLFKKTMGPVARVMEDA--DLSKSEID-EIVLVGGSTRIPKVQQLIAEY 378
                 4444344579******************************************998877762678************996254311113346899*******998874444677777735587766489*****99987754255556666..68999*************99999999***********986..56665555.499****99999999999875 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0      0.18   1.1e+02     113     136 ..      34      57 ..      11      94 .. 0.81
   2 !   30.3   0.3     1e-10     6e-08      43     143 ..     147     253 ..     140     258 .. 0.85
   3 !    5.8   0.0    0.0031       1.8     174     219 ..     338     380 ..     315     395 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.18
   TIGR02529 113 vdvGGGttGisilkkGkviysade 136
                 +d+G     + ++k+G+v   a++
  MMETSP1061-20121228|7551_1  34 IDLGTTYSCVGVFKNGRVEIIAND 57 
                 4555555689999**999877765 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 1e-10
   TIGR02529  43 veivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlqlk......ngavvdvGGGttGisilkkGkviysadeatGGthl 143
                   i++++k+++e  lG ++++a ++vP   ++ + +++ +    +G++v ++++ePtaaa +  ++      n  v d+GGGt  +++l     ++    + G thl
  MMETSP1061-20121228|7551_1 147 AMILQKMKSTAETFLGKDIKNAVVTVPAYFNDAQRQATKDAGTISGMKVERIINEPTAAAIAYGMDktggeaNVLVFDLGGGTFDVTLLTIDSGVFEVLATNGDTHL 253
                 57999********************************************************9999733332234589*******99999877777776666666665 PP

  == domain 3    score: 5.8 bits;  conditional E-value: 0.0031
   TIGR02529 174 vvkPvvekmaeivkkhiekqkvkdlylvGGassfsefedvfekelg 219
                 ++ Pv++ m +     + k++++++ lvGG++ ++++++++ +++g
  MMETSP1061-20121228|7551_1 338 TMGPVARVMED---ADLSKSEIDEIVLVGGSTRIPKVQQLIAEYFG 380
                 45566665554...568999********************999884 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.9e-06    0.0011     388     440 ..     353     407 ..     320     424 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.9e-06
   TIGR01312 388 glkikeirliGGGaksevwrqiladilgle..vvvpeeeegaalGaAilAaialg 440
                   +i+ei+l+GG ++ + ++q++a+ +g +   +  + +e++a+GaA+++ i +g
  MMETSP1061-20121228|7551_1 353 KSEIDEIVLVGGSTRIPKVQQLIAEYFGGKepSKGINPDEAVAYGAAVQGGILSG 407
                 46799**********************86611455679***********988776 PP

>> TIGR03706  exo_poly_only: exopolyphosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   2.8e-05     0.017      88     142 ..     181     235 ..     147     247 .. 0.90
   2 ?    0.1   0.1      0.15        85     194     247 ..     269     321 ..     256     353 .. 0.64
   3 ?   -2.8   0.0       1.1   6.4e+02     173     208 ..     333     367 ..     319     378 .. 0.72
   4 ?   -1.4   0.0      0.42   2.4e+02      42      65 ..     531     554 ..     524     562 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 2.8e-05
   TIGR03706  88 eeflkevekelgleievisGeeEArliylgvastlpeadglvvDiGGgStElilv 142
                 ++ +k + ++ g+++e i  e  A  i++g+ +t  ea+ lv D+GGg  +++l+
  MMETSP1061-20121228|7551_1 181 RQATKDAGTISGMKVERIINEPTAAAIAYGMDKTGGEANVLVFDLGGGTFDVTLL 235
                 5567888899999**99999999**************************999875 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.15
   TIGR03706 194 kakgkeligvgGtiralakllaeekkyplkglheyeitaeelkelleellklsr 247
                  +k+k+ i ++G  ral kl +e ++ + +  + ++  + e++el++    +++
  MMETSP1061-20121228|7551_1 269 MMKKKSDIDISGDKRALQKLRKEVERVKRALSS-QQQARLEIEELADGYDLSET 321
                 455666788999999999999877665533333.33333334444444433333 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.1
   TIGR03706 173 kelkkaekaireelasakelkkakgkeligvgGtir 208
                 + +kk+   +++ +++ + l+k + +e+++vgG+ r
  MMETSP1061-20121228|7551_1 333 DLFKKTMGPVARVMED-ADLSKSEIDEIVLVGGSTR 367
                 5555555666666666.6677778999999999987 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 0.42
   TIGR03706  42 etgrLseeaieraleaLkrFaell 65 
                 e+grLs+e ier ++  +++ae  
  MMETSP1061-20121228|7551_1 531 EKGRLSDEEIERMVNEAEQYAEED 554
                 677888888888887777777654 PP

>> TIGR01597  PYST-B: Plasmodium yoelii subtelomeric family PYST-B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.3   0.00011     0.064     110     144 ..     280     314 ..     257     333 .. 0.83
   2 ?   -3.3   4.6       1.8   1.1e+03     114     167 ..     570     628 ..     533     640 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
   TIGR01597 110 ktkklidklqkeleelkkeldnksndeleiqpihd 144
                   k+ ++kl+ke+e +k+ l  ++  +lei+ + d
  MMETSP1061-20121228|7551_1 280 GDKRALQKLRKEVERVKRALSSQQQARLEIEELAD 314
                 458899*************************9887 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1.8
   TIGR01597 114 lidklqkeleelkkel.dnks.ndeleiqpihdkiiikkdennsvseee...dlkqlen 167
                  + +l+++le+ +k + dn+s +d+ e+q + d  i   den    +e+   ++k +e 
  MMETSP1061-20121228|7551_1 570 YLYNLKNNLEDDEKGIaDNISaEDKKELQDMIDETIDWMDENPEADKEDydeKMKEVEQ 628
                 45678889999888873455425788999999999999999866544433323333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       361  (0.0880059); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 2473.85
//
Query:       MMETSP1061-20121228|7559_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1563.56
//
Query:       MMETSP1061-20121228|7562_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       351  (0.085568); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 855.29
//
Query:       MMETSP1061-20121228|7563_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       320  (0.0780107); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 435.56
//
Query:       MMETSP1061-20121228|7561_1  [L=1070]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00074   16.7   0.0     0.0017   15.5   0.0    1.5  1  TIGR00569 ccl1: cyclin ccl1
  ------ inclusion threshold ------
      0.041   11.4   5.0        0.1   10.1   3.5    1.6  1  TIGR00598 rad14: DNA repair protein


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   8.3e-07    0.0017      52     122 ..     673     743 ..     659     765 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 8.3e-07
   TIGR00569  52 ElelvkyYekklldlasalkptlPkevvgtAilyFkRFyLnnsvmeydPkiivltcvFlAcKveefnvsie 122
                  l+l k  + k ++la a++  l  + v+ Ai yF R  L+  v + + +   + c+ lA K++e +v i 
  MMETSP1061-20121228|7561_1 673 SLTLSKIRSLKQQALAAAVRAKLEISTVALAIIYFERLCLDCRVDKSNRRLSFAACLLLAIKINEAHVGII 743
                 678889999999********************************999999999************999864 PP

>> TIGR00598  rad14: DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   3.5     5e-05       0.1      88     149 ..     839     903 ..     813     916 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5e-05
   TIGR00598  88 evwGseeeLeeekerreekk....eerkekkfekklkelrkkvrsseytkkekkvhehefgeevek 149
                 +v+Gs+ +  +e+e r++++    e r+++k +kkl +l +++ +    + +++ he + ge+ e+
  MMETSP1061-20121228|7561_1 839 QVYGSWQQTLAEEEFRRQERearaEARRQRKEKKKLEQLHREIEAADR-RGSSSSHEGSVGEKYEE 903
                 6899998766666655555511115678899999*********99988.77888898888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1070 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.12s 00:00:00.63 Elapsed: 00:00:00.41
# Mc/sec: 3444.59
//
Query:       MMETSP1061-20121228|7564_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 625.51
//
Query:       MMETSP1061-20121228|7566_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 435.56
//
Query:       MMETSP1061-20121228|7567_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-06   25.8   3.1    4.1e-06   24.9   2.2    1.5  1  TIGR02753 sodN: superoxide dismutase, Ni
    7.1e-06   23.3   0.0    1.6e-05   22.1   0.0    1.5  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR02753  sodN: superoxide dismutase, Ni
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   2.2     2e-09   4.1e-06      20     139 ..      52     177 ..      37     180 .] 0.82

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2e-09
   TIGR02753  20 ahCDlPCgvyD.Pasarisaeavlamtkkllalkapssk.dadeqntfsrlvavkeeqaketkkeis.vlWtDyfkpehle...kfPeLhelvwkalkllsaakvnidkakaeelldavekideif 139
                  hC +PCg++D Pa      +   ++ k +++ k+ +++ d++  n+  r ++ ke++  ++   i        +k   ++   ++ +  +  + +++++ +ak+ +d+a a+ l +a++ +++++
  MMETSP1061-20121228|7567_1  52 GHCQVPCGIFDdPAMVEELKQHAATIRKAMVQCKDLHATgDLQSMNQIVRWINTKEDHCGKIITAIGeYCLCQRVKKDVFAcdkDYVDALKAHHAVMQAAMKAKQTMDTAGADALDHALADFAKMY 177
                 6********9648888777777788899999998876652699****************999988852445667777777523378888899999*******************999999999998 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   7.8e-09   1.6e-05      28      69 ..       4      42 ..       2      57 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 7.8e-09
   TIGR00601 28 ekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdf 69
                +ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +  
  MMETSP1061-20121228|7567_1  4 TKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 42
                57777777...**************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1032.96
//
Query:       MMETSP1061-20121228|7568_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|7572_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   31.8   0.0    0.00015   18.5   0.0    2.2  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    5.2e-06   23.4   0.0    4.3e-05   20.4   0.0    2.1  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    4.8e-05   19.9   0.0    0.00025   17.5   0.0    2.0  3  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    8.1e-05   19.0   0.1    0.00016   18.0   0.0    1.4  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00013   19.3   0.1    0.00019   18.7   0.1    1.2  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0007   16.3   0.0        0.1    9.2   0.0    2.3  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
     0.0011   15.5   0.0     0.0017   14.9   0.0    1.2  1  TIGR02734 crtI_fam: phytoene desaturase
      0.002   13.4   0.0      0.099    7.8   0.0    2.0  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
     0.0022   14.3   0.0       0.44    6.7   0.0    2.6  3  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
     0.0043   13.7   0.1      0.052   10.2   0.1    2.2  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
     0.0066   13.3   0.0       0.17    8.6   0.0    2.4  3  TIGR02053 MerA: mercuric reductase
  ------ inclusion threshold ------
      0.044   10.4   0.1      0.066    9.8   0.1    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.056    9.8   0.0      0.082    9.3   0.0    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase


Domain annotation for each model (and alignments):
>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.8e-07   0.00015     126     170 ..      78     123 ..      55     135 .. 0.85
   2 !   10.9   0.0   9.7e-05     0.031     188     304 ..     190     301 ..     183     305 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.8e-07
   TIGR01316 126 eekapstkkkvaviGaGpaGlavaselakkG.hevtvfealhkpGG 170
                   ++p++k+++aviG G +Gl +a+el   G h+++ fe  +  GG
  MMETSP1061-20121228|7572_1  78 RFREPPSKQRIAVIGGGWSGLQCAAELRELGvHQIKCFERNDGLGG 123
                 5679*************************99789999998776666 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 9.7e-05
   TIGR01316 188 tevkklkklGvkfrldylvGktvtleelleky..davfigtGaGlpkllnieGeel.k.gvysandfltrvnlmkayefpkkdtpvevgkkvvviGgGntavdaartalrlGae.vhvvyrr 304
                  ev++ ++   k r   lv k+    el+++   d v  +  a +p++ +++G e  k ++y + +f       k  +f +    v+  ++ vv+Gg   a d a + +r G +  h +yr 
  MMETSP1061-20121228|7572_1 190 VEVEQREHSQAKSREAMLVVKNTQTGELRSEGpfDLVVFASMAAKPRIPQLPGREKfKgKIYHSSEF-------KEEQFNE---IVTNRQRAVVVGGNKSACDLALCLQRGGYDnFHWIYRN 301
                 46777777888999999************98445*******************76413247777776.......5555554...4777899*********************9989999996 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.4e-07   4.3e-05     144     250 ..      86     244 ..      75     298 .. 0.70

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.4e-07
   TIGR01317 144 kkvavvGsGPaGlaaadqlnraG.htvtvferedrvGGllryGiPnlkldkeiverridlleaeGvdfvtnveiG....................................................kdisaeelked..fdavvlatGatkprdlpieGre 250
                 +++av+G G +Gl +a++l + G h++  fer+d  GG  +   P l+  k  ++  +  ++ + + f t  +i                                                     k+ ++ el+ +  fd vv+a+ a kpr  +++Gre
  MMETSP1061-20121228|7572_1  86 QRIAVIGGGWSGLQCAAELRELGvHQIKCFERNDGLGGTWH---PALRYYKLQIHGCLWAMTFKDLPFSTCRDINdgkasgelvqdflnkvgehknltdyyafnaevveveqrehsqaksreamlvvKNTQTGELRSEgpFDLVVFASMAAKPRIPQLPGRE 244
                 789*****************9988**************876...6677777777888888888888888887777556666666666666666666666666666666666666666666666666555555566554446666666666666666666665 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   8.1e-07   0.00025     140     189 ..      84     134 ..      80     138 .. 0.87
   2 ?   -1.4   0.0      0.46   1.5e+02     273     314 ..     257     300 ..     247     302 .. 0.65
   3 ?   -3.5   0.0         2   6.2e+02     377     398 ..     402     423 ..     386     427 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 8.1e-07
   TIGR01318 140 tgkrvaviGaGpaGlacadvlaraGv.kvvvfdrypeiGGlltfGipsfkl 189
                 +++r+aviG+G +Gl ca  l   Gv +++ f+r + +GG     +  +kl
  MMETSP1061-20121228|7572_1  84 SKQRIAVIGGGWSGLQCAAELRELGVhQIKCFERNDGLGGTWHPALRYYKL 134
                 679**********************95689**********87766666666 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.46
   TIGR01318 273 eeeplid..veGkrvvvlGGGdtamdcvrtairlgakkvtcvyr 314
                 +ee++ +  ++ +r vv+GG  +a d   +  r g  +   +yr
  MMETSP1061-20121228|7572_1 257 KEEQFNEivTNRQRAVVVGGNKSACDLALCLQRGGYDNFHWIYR 300
                 45555441145678899999999999776666666666666666 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 2
   TIGR01318 377 ivaGseavleadvviiafGfep 398
                 i+    +v++advv++  G+++
  MMETSP1061-20121228|7572_1 402 IMLSDGTVVDADVVLFGTGYDS 423
                 455556799*****99999875 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.1e-07   0.00016     372     419 ..      78     126 ..      67     136 .. 0.87
   2 ?   -4.0   0.0       2.3   7.1e+02     450     480 ..     208     240 ..     186     246 .. 0.51

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5.1e-07
   TIGR03997 372 tlkkarrrkkvlvvGgGPaGleaaataarrG.hrvtllereeelGGqvk 419
                   +++  ++++ v+GgG +Gl+ aa+  + G h++  +er++ lGG  +
  MMETSP1061-20121228|7572_1  78 RFREPPSKQRIAVIGGGWSGLQCAAELRELGvHQIKCFERNDGLGGTWH 126
                 56778889****************99999998**************866 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 2.3
   TIGR03997 450 lGveadaelvlaekP.Davvlat.Gsrparpdl 480
                 + +++++++++ e P D vv a+  ++p+ p+l
  MMETSP1061-20121228|7572_1 208 VVKNTQTGELRSEGPfDLVVFASmAAKPRIPQL 240
                 334455555666665555555542344555555 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.1     6e-07   0.00019       1      35 [.      88     123 ..      88     127 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 6e-07
   TIGR03467   1 vvvvGgGlAGLaAAveLaraGv.rvtllEarrqlGG 35 
                 ++v+GgG++GL +A+eL + Gv +++ +E+   lGG
  MMETSP1061-20121228|7572_1  88 IAVIGGGWSGLQCAAELRELGVhQIKCFERNDGLGG 123
                 68*******************63799*********9 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0081       2.6       1      33 [.      87     118 ..      85     126 .. 0.82
   2 !    9.2   0.0   0.00033       0.1      80     172 ..     198     291 ..     168     311 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0081
   TIGR03385   1 kivivGgvaaGasaAsrvrRLkkesdiivfekt 33 
                 +i ++Gg+ +G  +A+++r L    +i+ fe++
  MMETSP1061-20121228|7572_1  87 RIAVIGGGWSGLQCAAELRELGV-HQIKCFERN 118
                 68899999999999999999975.468888876 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00033
   TIGR03385  80 ikvdkeektvvvknnktneky.eesyDkLilst.GAkpkileiegi.eldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkerg 172
                  + +++e ++vvkn++t+e   e  +D +++++  Akp+i++++g  + +   +       e+ ++++  ++ +++vv+Gg   + +++  l++ g
  MMETSP1061-20121228|7572_1 198 SQAKSREAMLVVKNTQTGELRsEGPFDLVVFASmAAKPRIPQLPGReKFKGKIYHSSEFKEEQFNEIV--TNRQRAVVVGGNKSACDLALCLQRGG 291
                 3334567799*******98651668****9975279********952223222222233334556666..56789999999877777776666655 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.4e-06    0.0017       2      35 ..      89     123 ..      88     141 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.4e-06
   TIGR02734   2 vViGaGlgGLAlAirLaaaGi.evtvlekrdkpGG 35 
                  ViG+G +GL +A+ L   G+ +++ +e++d +GG
  MMETSP1061-20121228|7572_1  89 AVIGGGWSGLQCAAELRELGVhQIKCFERNDGLGG 123
                 7*******************6379**********9 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0   0.00032     0.099     536     577 ..      84     126 ..      69     138 .. 0.85
   2 !    3.5   0.0    0.0064         2     610     699 ..     210     300 ..     173     305 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00032
   TIGR03315 536 ekhkvaviGaGPaGlsagyflaraG.lpvtvfekkekagGvvk 577
                 +k+++aviG+G +Gl  +  l+  G +++  fe+++  gG+ +
  MMETSP1061-20121228|7572_1  84 SKQRIAVIGGGWSGLQCAAELRELGvHQIKCFERNDGLGGTWH 126
                 6789**************999999956899******9999865 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0064
   TIGR03315 610 edltvdelkkeg.ykyvvlaiGadkssklklkegnervlksleflkefkedk..tklklGkrvvvvGgGntamdaaraalrvpGvekvtvvyr 699
                 ++ +  el++eg ++ vv+a  a k++  +l +  e+    +    efke++  ++++  +r vvvGg + a d a   l+  G ++   +yr
  MMETSP1061-20121228|7572_1 210 KNTQTGELRSEGpFDLVVFASMAAKPRIPQLPGR-EKFKGKIYHSSEFKEEQfnEIVTNRQRAVVVGGNKSACDLALC-LQRGGYDNFHWIYR 300
                 45666788888769************99999876.677777777777777764457778889999***99****9965.55567777777776 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0014      0.44     141     165 ..      86     110 ..      78     117 .. 0.89
   2 ?   -1.3   0.0      0.36   1.1e+02      96     165 ..     222     293 ..     208     323 .. 0.73
   3 !    4.1   0.0    0.0083       2.6     212     237 ..     395     420 ..     381     429 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0014
   TIGR02374 141 kkaaviGgGLLGLeaaraLknlGld 165
                 ++ aviGgG  GL+ a  L++lG++
  MMETSP1061-20121228|7572_1  86 QRIAVIGGGWSGLQCAAELRELGVH 110
                 6789*******************85 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.36
   TIGR02374  96 syDkLilat.GsypfilPipGaDkkgvfvyrtieDl.daleaaakrtkkaaviGgGLLGLeaaraLknlGld 165
                 ++D +++a   + p i+ +pG +k +   y   e   + ++ +  + ++a+v+Gg     + a  L++ G d
  MMETSP1061-20121228|7572_1 222 PFDLVVFASmAAKPRIPQLPGREKFKGKIYHSSEFKeEQFNEIVTNRQRAVVVGGNKSACDLALCLQRGGYD 293
                 5677777752567999999999998888887665431457778888899*****998888888888887776 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.0083
   TIGR02374 212 svekaerlrfkDGssleadlvvlaaG 237
                 ++ ++ ++ ++DG++++ad+v++ +G
  MMETSP1061-20121228|7572_1 395 QAFTKTGIMLSDGTVVDADVVLFGTG 420
                 455677899**************999 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.1   0.00016     0.052       3     175 ..      89     291 ..      87     304 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00016
   TIGR04018   3 iiiGaGPiGlaaaieakkaglsyl.iiek....galvnsiykyPtnmtffstsekleigeiPfis....enekptrkealeYYrrvaekkkln.ikly.eevekvkkkeekfevkt..........ekeeyeak...kvvvatGyydipnllnvpGedlpkvshyykeahp...y.....vkqkvvvvGgknsavdaalelyrkg 175
                  +iG+G  Gl +a e+++ g++ +  +e+    g   +   +y  +++++     +   ++Pf +    ++ k++ +    +  +v e+k+l+   ++  ev +v+++e++   k+          ++ e++++    +vv   +  +p+  ++pG ++ k + y++  ++   +      +q+ vvvGg+ sa+d al l+r g
  MMETSP1061-20121228|7572_1  89 AVIGGGWSGLQCAAELRELGVHQIkCFERndglGGTWHPALRY-YKLQIHGCLWAMTFKDLPFSTcrdiNDGKASGELVQDFLNKVGEHKNLTdYYAFnAEVVEVEQREHSQA-KSreamlvvkntQTGELRSEgpfDLVVFASMAAKPRIPQLPGREKFKGKIYHSSEFKeeqFneivtNRQRAVVVGGNKSACDLALCLQRGG 291
                 6788888888888888888876553567632222223333344.245666777777777888876222123355555555677777777777522333246666666552211.111233444434333333332235777778888899999999988776666544432111211111457899*************999987 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.07        22     167     192 ..      85     110 ..      76     130 .. 0.76
   2 !    8.6   0.0   0.00053      0.17     136     204 ..     230     306 ..     188     317 .. 0.77
   3 ?   -2.7   0.0       1.5   4.8e+02     252     280 ..     407     435 ..     378     440 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.07
   TIGR02053 167 peslvviGggaiavElaqlfarlGse 192
                  ++++viGgg  ++  a  ++ lG++
  MMETSP1061-20121228|7572_1  85 KQRIAVIGGGWSGLQCAAELRELGVH 110
                 47899999999999999999999985 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00053
   TIGR02053 136 AtGarpavPeipGLkeae.......yltseelleldkipeslvviGggaiavElaqlfarlGse.vtllqrserllk 204
                    a+p++P++pG ++ +        + +e++ e  +  ++ vv+Gg+  a +la  ++r G +  + ++r   l+ 
  MMETSP1061-20121228|7572_1 230 SMAAKPRIPQLPGREKFKgkiyhssEFKEEQFNEIVTNRQRAVVVGGNKSACDLALCLQRGGYDnFHWIYRNPYLFW 306
                 456899*******9999888544444555555555666699*******************99862466666665555 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1.5
   TIGR02053 252 kkeveadellvAtGRkpnvdgLnLekvgv 280
                  + v+ad +l  tG  + +  L L k g 
  MMETSP1061-20121228|7572_1 407 GTVVDADVVLFGTGYDSGISNLRLTKGGG 435
                 45678888888888888888888888775 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.1   0.00021     0.066       1      34 [.      88     122 ..      88     123 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00021
   TIGR00275   1 viiiGgGaaGlmaAitaae.egakVlllEknkkig 34 
                 +++iGgG +Gl +A+++ e   +++  +E+n+ +g
  MMETSP1061-20121228|7572_1  88 IAVIGGGWSGLQCAAELRElGVHQIKCFERNDGLG 122
                 68*****************7789999999998776 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00026     0.082       2      43 ..      85     125 ..      84     141 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00026
   TIGR00562   2 kkkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGki 43 
                 k+ ++v+GgG sGL  a  l+ +    ++  +E +d  GG+ 
  MMETSP1061-20121228|7572_1  85 KQRIAVIGGGWSGLQCAAELREL-GVHQIKCFERNDGLGGTW 125
                 6789****************988.5668999********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        49  (0.0119454); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.43
# Mc/sec: 1820.22
//
Query:       MMETSP1061-20121228|7571_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2908.84
//
Query:       MMETSP1061-20121228|7577_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 678.80
//
Query:       MMETSP1061-20121228|7576_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1955.84
//
Query:       MMETSP1061-20121228|7575_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 389.68
//
Query:       MMETSP1061-20121228|7579_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 384.49
//
Query:       MMETSP1061-20121228|7580_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|7581_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-24   82.1  22.3    7.5e-23   78.9  15.3    2.1  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.9  15.3   1.8e-26   7.5e-23       1     394 [.     187     609 ..     187     611 .. 0.93

  Alignments for each domain:
  == domain 1    score: 78.9 bits;  conditional E-value: 1.8e-26
   TIGR00797   1 PailaniaqpllslvDtafvGh.lgpveLaavglgslvlmvliiillglltattalvaqavGagnqq...rlsrsasqslllalllgllvavvlifaakpllslmgadeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignvini.iLdyilifkfg...lGivGaAlAtvisqylmflllllyilk......................akkvdlknegllkpdwealkrllklglplllrvilvsflvtllallvarlGstalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpkrakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpllfllglvtglglkg 394
                 P ++  +a    +++ + +vGh lg++eL+a +l  l+l ++  ++  +l +++ +++q v a++++   r++++++ s+l+ ++  ++++v++ f++k+ll ++++d+++ae++q+Y+ + i++i+++ +  a+q+ l+ +g    + i+t++g v+ +  +  +l+ +     + + G ++  v+++++ +++ll +i +                        + + + + +   + +alk ll + l  +l  il     ++l  ++ +lG +++ a +++  ++ +l ++   +a   +++v++alG gd+++ak  +++a+++ ++ g+++ ++ +l   +i+   t++p  +e+++  l++++l  ++ ++a + + vl    ++  ++++ +++  +++lpl+  ++  +++ l+g
  MMETSP1061-20121228|7581_1 187 PYMIQAAARAASGMIQMGIVGHqLGTAELSAWVLLDLFLKLTSDFVENVLGSADMMISQIVEAEDEKsslRIGIYLQLSILFYVVGMVPLIVFWSFFTKDLLVFLNLDSAIAEMGQRYANAYIVSILFRGITSAFQNTLDVVGFEVESTICTIVGEVATVsTIVAVLVSDTIfpeMTLEGLGWVYVLVSMCYLAALLTLINRngwledyyeglfsspfsvlkaaVTDNNAR-NEEDVVSGAALKLLLSNTLQFALDDILYKGEWQILIIFARSLGPAEVVAWGILGEIWGYLEYIVTAIAEGCEVRVASALGSGDVDNAKLLTYKAIWICFVWGVLVSVVFFLLEDEIPKWITTYPLLQEMISYSLPIIILANLVSGIAIMAEHVLWCQNRAPLSTTICSFTSCLVTLPLAGFSSYLFRFNLIG 609
                 778888899999999999***8588*****************9999999999*******999888777779**************************************************************************************988346667777433589***************************************99988765432233333.4556678899**************************************************************************************************************************************************************************999887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 2449.13
//
Query:       MMETSP1061-20121228|7582_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-19   67.3   0.1    7.6e-12   43.2   0.1    2.9  2  TIGR02227 sigpep_I_bact: signal peptidase I
    1.1e-07   30.1   0.0     0.0077   14.6   0.0    2.9  2  TIGR02754 sod_Ni_protease: nickel-type superoxide dismutase maturation protease
    9.2e-05   20.2   0.0     0.0055   14.4   0.0    2.2  2  TIGR02228 sigpep_I_arch: signal peptidase I


Domain annotation for each model (and alignments):
>> TIGR02227  sigpep_I_bact: signal peptidase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1   5.5e-15   7.6e-12       4      82 ..      59     192 ..      56     196 .. 0.91
   2 !   21.0   0.0   3.8e-08   5.2e-05     119     160 ..     195     238 ..     190     239 .. 0.92

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 5.5e-15
   TIGR02227   4 lilialllallirtfvfelvkvpgesMeptlkegdlilvnklayg......................................................taepkrgDivvfkapeeekk.eyikRviglpGDkv 82 
                 +++ ++ +a+     +f+l++v g+sMeptl +gd ++v k +                                                         a+p  gDivvfk+pe+  +  +ikRv++l G+ +
  MMETSP1061-20121228|7582_1  59 TMIAVFPIAVWAHDSLFSLCRVRGSSMEPTLFNGDIVVVRKSDGFwqrwtrstgdvtiernegsdmakdnnqwaierervlaferehcnsngaigllrkPATPITGDIVVFKDPEKYPDrWNIKRVVALGGQMM 192
                 5566667777788899*************************7655899*************************************************99999************98765379*********976 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 3.8e-08
   TIGR02227 119 vkVPegkyfvLGDnrdnslDSRs..iGlvkkdeivGkvsivllp 160
                   VP+  ++v GDn + s DSRs   G+v+k+ +vG + ++l+p
  MMETSP1061-20121228|7582_1 195 SYVPPYCMWVEGDNLSSSIDSRSksHGPVSKKLLVGIAEYRLWP 238
                 569********************99*****************98 PP

>> TIGR02754  sod_Ni_protease: nickel-type superoxide dismutase maturation protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   2.7e-05     0.037       1      21 [.      78      98 ..      78     116 .. 0.89
   2 !   14.6   0.0   5.6e-06    0.0077      33      89 ..     164     233 ..     152     234 .. 0.64

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.7e-05
   TIGR02754  1 lkvdGesmsPtlkpedrvlvq 21
                ++v G sm Ptl ++d v+v+
  MMETSP1061-20121228|7582_1 78 CRVRGSSMEPTLFNGDIVVVR 98
                89*****************98 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 5.6e-06
   TIGR02754  33 GevvvvrHPlk.pavliiKrlaa....vddn......glellgdnpkastdsr..klGlvskelllGkvl 89 
                 G +vv   P+k p+   iKr+ a    + ++       +++ gdn ++s dsr    G+vsk+ll+G+++
  MMETSP1061-20121228|7582_1 164 GDIVVFKDPEKyPDRWNIKRVVAlggqMMRSsyvppyCMWVEGDNLSSSIDSRskSHGPVSKKLLVGIAE 233
                 6666666666545555666665411112222122222589***********983369**********986 PP

>> TIGR02228  sigpep_I_arch: signal peptidase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0     4e-06    0.0055      18      56 ..      61     100 ..      54     123 .. 0.78
   2 !    3.6   0.0    0.0086        12      63      83 ..     163     185 ..     146     197 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4e-06
   TIGR02228  18 lllvglvskasgedpvvv.vlSgSMePtfntGdlvlvegv 56 
                 ++++ +++ a+ + ++ + v + SMePt+ +Gd+v+v + 
  MMETSP1061-20121228|7582_1  61 IAVFPIAVWAHDSLFSLCrVRGSSMEPTLFNGDIVVVRKS 100
                 555666666665555555899***************9875 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0086
   TIGR02228  63 vGdvivykseekr..klviHrvi 83 
                  Gd++v+k +ek    + i rv+
  MMETSP1061-20121228|7582_1 163 TGDIVVFKDPEKYpdRWNIKRVV 185
                 7*******999855567777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.10s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 995.57
//
Query:       MMETSP1061-20121228|7583_1  [L=1170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.13s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 3860.68
//
Query:       MMETSP1061-20121228|7584_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047    9.3   0.0      0.061    8.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   1.5e-05     0.061       2      72 ..     309     378 ..     308     385 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 1.5e-05
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaa 72 
                 tg k a+k l    ++ e      r ei +  +L hPniv+L +  e+    ++ v e+  G  l ++L  
  MMETSP1061-20121228|7584_1 309 TGVKYAVKCLDLGLVDTEEGLMQLREEIYIMCQLDHPNIVRLEEVYESHS-EIYLVQELCLGGELFDRLDE 378
                 78888999999999999999999******************988888777.78889998888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1724.66
//
Query:       MMETSP1061-20121228|7588_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-79  266.1   3.5    1.4e-71  239.5   1.0    2.3  2  TIGR02037 degP_htrA_DO: peptidase Do
    1.5e-59  199.8   4.4      4e-51  172.0   2.5    2.1  2  TIGR02038 protease_degS: periplasmic serine peptidase DegS
     0.0011   15.8   0.7     0.0025   14.7   0.1    1.7  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0     6e-10   8.2e-07      53      90 ..     195     232 ..     155     240 .. 0.72
   2 !  239.5   1.0     1e-74   1.4e-71      92     319 ..     292     529 ..     281     563 .. 0.88

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 6e-10
   TIGR02037  53 eeeekveslGSGviisadgyvlTNnHvvdgakeikvkl 90 
                 +  e   + GSG++ ++dg ++TN+Hvv +ak  +v+l
  MMETSP1061-20121228|7588_1 195 NIMEVPLGTGSGFVWDKDGHIVTNYHVVRNAKFAQVAL 232
                 345677899**********************9999987 PP

  == domain 2    score: 239.5 bits;  conditional E-value: 1e-74
   TIGR02037  92 dgrefkaklvgkDektDiAvlkieak.kklpvvklgdsdklrvGdlvlAiGnPfglgetVtaGivSAlgrs.glnked.yeeFIQtDaaiNpGNSGGpLvnlkGeviGiNtaIlsksGgsvGigFAiPinlvkkvveqllkkgkvkrglLGvkiqevtkdlakslglekakGalvaevlkgspAekaGlk...........aGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgk 319
                  ++ fka++vg+D+ +DiAvlki+a  + l  ++lg s++l+vG+l lAiGnPfgl++t taG++S+lgr+ + ++++ +++ IQtDaaiNpGNSGG L++ +G +iG+NtaI+s+sG s+GigFAiP++++k ++++l+++gkv r++LG+ +   +++ a++lg+   +G+lv +v +gsp ++aGlk            GD+i+kv++  i++ a+l + + ++kpg+ v++++lR ++
  MMETSP1061-20121228|7588_1 292 KRSVFKARVVGSDPGKDIAVLKIDAPeDILYPIQLGKSSTLKVGQLGLAIGNPFGLDHTLTAGVISGLGREvKSPIGRpITNVIQTDAAINPGNSGGVLLDSRGMLIGMNTAIYSPSGASAGIGFAIPVDTIKYIATTLIRDGKVVRPILGIGFL--ESKQARALGIG--RGVLVLDVPPGSPPARAGLKgtkrtetglveIGDIIVKVDDTVIETEANLFQSLEKYKPGDVVEVTVLRIDA 529
                 5678*********************9455789**************************************954455446************************************************************************9885..56779999995..9*****************974444444443359***********************************9654 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     6e-10   8.2e-07      51     109 ..     172     233 ..     129     242 .. 0.80
   2 !  172.0   2.5   2.9e-54     4e-51     113     337 ..     295     528 ..     290     540 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 6e-10
   TIGR02038  51 vrraaPavvnvynrslsen..slnklsiq.glGsGvimskeGyiltnkhvikkadqivvalq 109
                   r aP+vv +   s++++  s n +++  g GsG + +k+G+i+tn+hv+++a    val 
  MMETSP1061-20121228|7588_1 172 FERNAPSVVFIDTFSVKQDafSPNIMEVPlGTGSGFVWDKDGHIVTNYHVVRNAKFAQVALI 233
                 56899****99888887764477788884489**********************99999885 PP

  == domain 2    score: 172.0 bits;  conditional E-value: 2.9e-54
   TIGR02038 113 vfeaelvGsdsltdlavlkieadn..lptiPlnadrkpkvGdvvlaiGnPynlGqtitqGiisatGrnglssvGr..qnflqtdaainaGnsGGalvnsaGelvGintlsfqkaadeeaeGinfaiPiklaskileklirdGrvirGylGvdgedinslsaqllgledlrgivvtevdPngPaaragll...........vrdvilkldnkevisaeelmdrvaelrPgskvlvtvlrkg 337
                 vf+a++vGsd+  d+avlki+a +  l  i l ++++ kvG + laiGnP+ l  t+t G+is  Gr+  s+ Gr   n +qtdaain GnsGG l++s+G l+G+nt+ +  ++   + Gi+faiP++  + i + lirdG+v+r  lG++   ++s +a+ lg+   rg++v++v P +P aragl+             d+i+k+d+  + +  +l + + + +Pg +v+vtvlr +
  MMETSP1061-20121228|7588_1 295 VFKARVVGSDPGKDIAVLKIDAPEdiLYPIQLGKSSTLKVGQLGLAIGNPFGLDHTLTAGVISGLGREVKSPIGRpiTNVIQTDAAINPGNSGGVLLDSRGMLIGMNTAIYSPSG--ASAGIGFAIPVDTIKYIATTLIRDGKVVRPILGIGF--LESKQARALGIG--RGVLVLDVPPGSPPARAGLKgtkrtetglveIGDIIVKVDDTVIETEANLFQSLEKYKPGDVVEVTVLRID 528
                 89*******************97756888888899999************************************9667*******************************997765..689*******************************99..899999998886..8****************9863333332222257************************************87 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.21   2.9e+02      84     111 ..     373     399 ..     365     411 .. 0.76
   2 !   14.7   0.1   1.8e-06    0.0025     126     171 ..     482     528 ..     473     540 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.21
   TIGR02860  84 kvlpeikvvpGGqsiGvklntkGvlvvG 111
                 +v+++   +  G+s Gv l+++G+l +G
  MMETSP1061-20121228|7588_1 373 NVIQTDAAINPGNSGGVLLDSRGML-IG 399
                 55666666778999*********99.45 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.8e-06
   TIGR02860 126 aeeagiqvGDlilkvngekikeeedvaklineag.geklkltikRkk 171
                 +e++ +++GD+i+kv+++ i++e ++ + +++ + g  +++t+ R +
  MMETSP1061-20121228|7588_1 482 TETGLVEIGDIIVKVDDTVIETEANLFQSLEKYKpGDVVEVTVLRID 528
                 577889**************************999********9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.39
# Mc/sec: 1922.30
//
Query:       MMETSP1061-20121228|7585_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.68
# Mc/sec: 654.12
//
Query:       MMETSP1061-20121228|7589_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-17   59.4   0.1    8.9e-17   59.1   0.1    1.1  1  TIGR02540 gpx7: putative glutathione peroxidase Gpx7


Domain annotation for each model (and alignments):
>> TIGR02540  gpx7: putative glutathione peroxidase Gpx7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.1   2.2e-20   8.9e-17       1     138 [.      28     165 ..      28     178 .. 0.86

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 2.2e-20
   TIGR02540   1 dfysfevkdikgrlvslekyrgkvslvvnvaseceftdknyralqelqrelgpshfnvlafpcnqfgesepksskeiesfarknygvtfp..ifskikilgseaepafrflvdssk.keprwnfw.kylvdpegkvvkawkp 138
                 +fys  ++   g +  +e +rgkv    nvas+ +    +y ++  l+   g++ + ++ fp  +fg +e ++++ei++fa+      fp  +++  ki g  a   ++f+ d ++  +p+wnf  k+lv+ +g+v    + 
  MMETSP1061-20121228|7589_1  28 SFYSLYAVTGDGSIQKMEDFRGKVVYATNVASKEGRPAXEYAQFASLNERWGNK-LVIFGFPSREFGWQEFDNDEEIKEFAQG---KNFPgiMMKLGKIKGDTAPEVWKFFKDETGaSDPTWNFKgKFLVSKKGEVSIPTDL 165
                 69**999********************************************975.789**********************984...45665355666999***********98765278*****659*******99755555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 945.04
//
Query:       MMETSP1061-20121228|7591_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1541.63
//
Query:       MMETSP1061-20121228|7592_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 541.16
//
Query:       MMETSP1061-20121228|7590_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0049   12.4  18.6     0.0023   13.5  11.2    1.6  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.61    7.7   9.2       0.11   10.1   2.0    2.4  2  TIGR03349 IV_VI_DotU: type IV / VI secretion system protein, DotU family
        3.1    3.7   8.2        5.5    2.8   5.7    1.3  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5  11.2   1.7e-06    0.0023     231     351 ..     286     409 ..     268     429 .. 0.73
   2 ?   -3.1   0.0      0.17   2.4e+02     255     274 ..     608     627 ..     557     635 .. 0.60

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.7e-06
   TIGR02169 231 kelealekqkekiekelae...leeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekk 351
                   l +l  ++e++++el++   l+++ + + + ++ ++ +le+i+kkl e ++  +k++  e   ++++l++++++++ +e+  + + + ++d++e++ k+e+ ++k++ee+e l++++ +++ 
  MMETSP1061-20121228|7590_1 286 DDLLQLTMELERTKQELKSeqrLRKQCQSSLASMQSKASNLERINKKLLEDAQSGRKQSTTEVSDLRNELKSTTMKLQAAEEDAQLALDLAKDSAEEKDKLEELLRKTQEEVEMLKKRVGNNRL 409
                 4444455555555555544000445555555566777788888888888888888888888888888888888888888888888888888888888888888888888888888888877665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.17
   TIGR02169 255 ekleeeieelekeleeiekk 274
                 +++e++i+ ++k ++++e+ 
  MMETSP1061-20121228|7590_1 608 QNVEFKIDRQQKDINQLESL 627
                 22222222222222222222 PP

>> TIGR03349  IV_VI_DotU: type IV / VI secretion system protein, DotU family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.0     8e-05      0.11       5      52 ..     283     332 ..     281     338 .. 0.84
   2 ?    0.3   0.3     0.079   1.1e+02       5      44 ..     363     404 ..     360     413 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 8e-05
   TIGR03349   5 aaaspllslvtqLrktaasddv.eelreqlqeelrlfeerlraag.isee 52 
                 ++a +ll+l ++L++t+++ ++ ++lr+q+q +l+++++++ + + i+++
  MMETSP1061-20121228|7590_1 283 QHADDLLQLTMELERTKQELKSeQRLRKQCQSSLASMQSKASNLErINKK 332
                 6799***********99999666*****************9987645555 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.079
   TIGR03349   5 aaaspllslvtqLrktaasd.dv.eelreqlqeelrlfeerl 44 
                 +aa++  +l+++L k++a++ d  eel +++qee++  ++r+
  MMETSP1061-20121228|7590_1 363 QAAEEDAQLALDLAKDSAEEkDKlEELLRKTQEEVEMLKKRV 404
                 677777899999999988887667999999999999888776 PP

>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   5.7     0.004       5.5     737     867 ..     300     432 ..     277     445 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.004
   TIGR03683 737 aaieaiqeledllkesaeilkvepeqlpetvkrffeewkeqrkeieklkeklaelkieeleseaekvgdvkvvvekvdadeeelkeiaekl.aekekvvvlvsekegkvkvvvssge.kvkvkagelvkeiak 867
                 + ++  q+l++  ++s   ++ ++++l++  k+++e+ +  rk+     + l ++ ++++++ ++  +d++++ +  +++ ee  ++ e l +++e+v +l+++ +++   vv+++e +v++  +e+++++ +
  MMETSP1061-20121228|7590_1 300 QELKSEQRLRKQCQSSLASMQSKASNLERINKKLLEDAQSGRKQSTTEVSDLRNELKSTTMKLQAAEEDAQLALDLAKDSAEEKDKLEELLrKTQEEVEMLKKRVGNNRLAVVTTPErRVHFADTEVIDSVDS 432
                 4566667777777777888889999999999999999998888776666666655555555555555667776666655556655655555333444445555555444444444441446677777777743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       389  (0.0948318); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.30
# Mc/sec: 2811.37
//
Query:       MMETSP1061-20121228|7594_1  [L=710]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (710 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 2402.88
//
Query:       MMETSP1061-20121228|7595_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-05   20.8   0.0    4.7e-05   20.2   0.0    1.3  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA


Domain annotation for each model (and alignments):
>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   1.1e-08   4.7e-05     124     182 ..     224     281 ..     174     295 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1.1e-08
   TIGR00479 124 sksgkqlqaGfykkgshdivdvkqClvqepklnkllpkvkailenfgvskyneekekgk 182
                 s+ + +l +G++  gshd+++v +C+v + ++n l++ + + ++ +gv++ ++  e+ +
  MMETSP1061-20121228|7595_1 224 SNPT-RLRIGLFVPGSHDLLPVPDCPVHHRRINGLVKVLEEECNALGVPAALDSSEHQE 281
                 3444.69****************************************999887766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1749.92
//
Query:       MMETSP1061-20121228|7596_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 797.93
//
Query:       MMETSP1061-20121228|7600_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.26    8.6   4.7       0.29    8.5   3.2    1.0  1  TIGR01644 phage_P2_V: phage baseplate assembly protein V


Domain annotation for each model (and alignments):
>> TIGR01644  phage_P2_V: phage baseplate assembly protein V
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.2     7e-05      0.29     125     185 ..      11      67 ..       3      68 .] 0.80

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 7e-05
   TIGR01644 125 gttvtvdegeikltgkvtvlkgpelsitGnvtidGtlhtggdlssnGisldkhkhsgvssg 185
                 +++ ++ + +i++ +k +v +g ++ +t  + + G    +g++++n ++ ++h+h+ ++ +
  MMETSP1061-20121228|7600_1  11 TQEEIFTSMTIEIPTKHAVATGVGVALT-RSRTFG---SNGSIHNNNNNNNSHHHHHHHHH 67 
                 6788899999999999999999888888.444444...59********9999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|7603_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.32
# Mc/sec: 412.47
//
Query:       MMETSP1061-20121228|7601_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.43
# Mc/sec: 1853.99
//
Query:       MMETSP1061-20121228|7598_1  [L=1053]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1053 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.18s 00:00:00.59 Elapsed: 00:00:00.51
# Mc/sec: 2725.19
//
Query:       MMETSP1061-20121228|7604_1  [L=1147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.18s 00:00:00.62 Elapsed: 00:00:00.38
# Mc/sec: 3983.99
//
Query:       MMETSP1061-20121228|7599_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-30  103.3   4.7    3.5e-30  103.3   3.2    2.5  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.3e-15   53.7   0.0    4.3e-15   53.7   0.0    2.9  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    9.4e-10   35.4   0.0    5.4e-06   23.0   0.0    4.1  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      2e-09   35.3   0.1    8.4e-07   26.7   0.0    2.5  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    6.4e-08   29.6   5.3    2.2e-06   24.6   0.0    2.6  3  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    6.5e-07   26.3   0.0    6.5e-07   26.3   0.0    2.0  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    9.3e-06   23.3   0.1    9.3e-06   23.3   0.0    2.0  2  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -14.5  20.2         7   4.1e+03      23     119 ..      81     176 ..      67     178 .. 0.35
   2 !  103.3   3.2     6e-33   3.5e-30      16     300 ..     160     442 ..     147     446 .. 0.69

  Alignments for each domain:
  == domain 1    score: -14.5 bits;  conditional E-value: 7
   TIGR01622  23 rdksrersRdrsrdRersrskerdrdfdr..rdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrekeerlkeelteeeRDa 119
                  d +++ + + s++   s s + d + +    ++d +  +d   +s  ++ ++ e ++ek+ +  d+    +   +d ++  eke++ +e+l+ + +D+
  MMETSP1061-20121228|7599_1  81 DDSGSDSDSSSSSSDSDSDSDDEDAKKKPteAKKDESDSSDSDSDSDDDEAKKVETKKEKS-DSSDSDS-DSS-SDDDSSSAEKEKNAPEKLKAAAKDD 176
                 3333333322222222222222332222211223333333333333333333333333333.2222222.222.2333333444445667766666665 PP

  == domain 2    score: 103.3 bits;  conditional E-value: 6e-33
   TIGR01622  16 ea.drdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrresererereker..rredevrrkrkeredrrerrek....eer.lkeelteeeRDartvfvlqlalklreRdlkEFFskvg.kvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqaseAEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvt 300
                 e+ ++ +e+ k   ++ + s+d +  +s + d + d  d + +   d e++s  +++s+ + +   +   + ed+  +  +++ +++ + +     e    k+ +++ +  +   ++  l+ + +e  ++E+Fsk g   + v  +  +  +rS G a ++F d  s  +A++l+G  + g+ + ++ s     +a + +t+++       +   ++vGnl  +i E++Lr  F   G i +v++  D etG  kGyG ++F ++e a +A  k+ G ++ GR ++v +a+D  
  MMETSP1061-20121228|7599_1 160 EKeKNAPEKLKAAAKDDSSSSDSD--SSSDSDSNSDDEDEKNNAKMDVEKKSSDDSSSSSDSDSSSDSdsDSEDTPSSEPPQDSSKKRKADDeetfEPPvKKQAVADSDGTSTKLYIRGLPWRTTEEAVQEYFSKCGsGPKSVE-LPLQDDGRSSGTAILDFHDAASAAAAMELNGADFEGRWLSIKYSTPKPILARE-TTQKP------EGCCTVFVGNLSWDIDEESLRAAFADCGTITQVRFSTDRETGDFKGYGHLEFAETE-ATDAAVKMAGTDILGRAVRVDFAQDKR 442
                 221333333333333333333333..3334455555555555555565555555554444333222221234444333333333332222221222212256677777777888999********************5445555.4567789*************************************876666655.55444......356789**********************************************9976.778889*******************75 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.6   8.5         7   4.1e+03     443     527 ..      58     143 ..       7     230 .. 0.43
   2 !   53.7   0.0   7.3e-18   4.3e-15     165     366 ..     257     443 ..     244     445 .. 0.84

  Alignments for each domain:
  == domain 1    score: -8.6 bits;  conditional E-value: 7
   TIGR01628 443 pnalaqlaqqrlqaqgrrnlnnrnrnv..lgnmnkkqqnaaskanqanvkaqpqaqsknqmqqvvqdnnlpqkqatksnnkestlta 527
                 ++ la+ +++ l+++ + ++++ +++    +  +    +  s ++ ++ k++p   +k++ +++  d+    ++a+k+++k+++  +
  MMETSP1061-20121228|7599_1  58 AEELAEEVAK-LESEAEAAAKKAKDDSgsDSDSSSSSSDSDSDSDDEDAKKKPTEAKKDESDSSDSDSDSDDDEAKKVETKKEKSDS 143
                 1222222211.2222222222222222112222222333333333333333333222223333333333233333332222222222 PP

  == domain 2    score: 53.7 bits;  conditional E-value: 7.3e-18
   TIGR01628 165 ikksereatkekkftNlYvKnlddsvtedklrelFakfGe.itSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeq 366
                 +kk+   a ++   t lY++ l+   te+ ++e F+k G    S+    ++++r+ g a + +++a +A+ A+e lng +++    g+ l++    ++     +l ++  ++ +          ++v Nl   +d+e+Lr  F ++G+it ++  +d e++  kg+G   f++ e+   A  ++ g+ + g+ + v +Aq k q
  MMETSP1061-20121228|7599_1 257 VKKQAV-ADSDGTSTKLYIRGLPWRTTEEAVQEYFSKCGSgPKSVELPLQDDGRSSGTAILDFHDAASAAAAME-LNGADFE----GRWLSIKYSTPK----PILARETTQKPEG------CCTVFVGNLSWDIDEESLRAAFADCGTITQVRFSTDrETGDFKGYGHLEFAETEATD-AAVKMAGTDILGRAVRVDFAQDKRQ 443
                 444444.67888899************************7358999999999999**************99996.9*****9....999999877766....4666665555544......7889*******************************9999***********9986555.5556999999999999999997755 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -41.0  39.6         7   4.1e+03      43     111 ..     130     208 ..      32     252 .. 0.52
   2 !   18.5   0.0   2.1e-07   0.00012     272     374 ..     242     346 ..     232     358 .. 0.77
   3 !   23.0   0.0   9.3e-09   5.4e-06     292     374 ..     358     439 ..     349     444 .. 0.89

  Alignments for each domain:
  == domain 1    score: -41.0 bits;  conditional E-value: 7
   TIGR01642  43 rrsrrkdsRdRdrrrydsrsissleeds..........rrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkr 111
                 +  + + ++++  ++  + + ss++++s          + ++  ++++ s +s+s s    +s +  ++n+ k d +k+
  MMETSP1061-20121228|7599_1 130 EAKKVETKKEKSDSSDSDSDSSSDDDSSsaekeknapeKLKAAAKDDSSSSDSDSSSDSDSNSDDEDEKNNAKMDVEKK 208
                 1111111111111111111111111111121111223322222222222222222222222222222222222222222 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 2.1e-07
   TIGR01642 272 sqknsdinlkaveklvnsktvlds...edklyignLPldlkddqvkeLLesFGdL.kaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAt 374
                 s+k+  +  +++e  v+ ++v ds     klyi +LP   +++ v+e   + G   k+ +l   +++G s G a  +++d+  +  A+  LnG +  ++ L +k  t
  MMETSP1061-20121228|7599_1 242 SKKRKADDEETFEPPVKKQAVADSdgtSTKLYIRGLPWRTTEEAVQEYFSKCGSGpKSVELP-LQDDGRSSGTAILDFHDAASAAAAM-ELNGADFEGRWLSIKYST 346
                 45555555556665566666666522258***********************9753888874.5689*************99987665.6*********99999765 PP

  == domain 3    score: 23.0 bits;  conditional E-value: 9.3e-09
   TIGR01642 292 vldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAt 374
                  +++   +++gnL  d++++ ++    + G +       d++tG  KGy+  e+ ++  td A++ + G ++ ++ + v +A 
  MMETSP1061-20121228|7599_1 358 KPEGCCTVFVGNLSWDIDEESLRAAFADCGTITQVRFSTDRETGDFKGYGHLEFAETEATDAAVK-MAGTDILGRAVRVDFAQ 439
                 56666789*****************************************************9997.78999999888888875 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       1.6   9.7e+02     213     243 ..      25      53 ..      14      93 .. 0.45
   2 !    5.9   0.0     0.003       1.7      90     154 ..     270     333 ..     259     345 .. 0.88
   3 !   26.7   0.0   1.4e-09   8.4e-07     268     348 ..     360     441 ..     343     444 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.6
   TIGR01661 213 akfrlsaldflavlakrlqqhavaqqaaaqr 243
                 ++++ +a +  +  ak++  +     +aa +
  MMETSP1061-20121228|7599_1  25 EQIKIMANKEKELKAKQKAAKEAK--KAADE 53 
                 444444444444333332222211..11111 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.003
   TIGR01661  90 anlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGt 154
                 + ly+ GlP   t + +++ fs+ G    s  l  +  + s G   + f     a  a  +lnG+
  MMETSP1061-20121228|7599_1 270 TKLYIRGLPWRTTEEAVQEYFSKCGSGPKSVELPLQDDGRSSGTAILDFHDAASAAAA-MELNGA 333
                 68****************************999999999*******999998888765.589997 PP

  == domain 3    score: 26.7 bits;  conditional E-value: 1.4e-09
   TIGR01661 268 agyc.ifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfktnk 348
                  g c +fv nls d de  l   f++ G++++v+   d +t   kGyg +  ++ +ea+ a   + G+ + +r ++v f  +k
  MMETSP1061-20121228|7599_1 360 EGCCtVFVGNLSWDIDEESLrAAFADCGTITQVRFSTDRETGDFKGYGHLEFAE-TEATDAAVKMAGTDILGRAVRVDFAQDK 441
                 355549*********99999679****************************987.799999999*************998876 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00021      0.13     235     306 ..     271     347 ..     257     350 .. 0.78
   2 !   24.6   0.0   3.8e-09   2.2e-06      42     118 ..     343     423 ..     341     448 .. 0.89
   3 ?  -14.5   7.9         7   4.1e+03     376     396 ..     463     485 ..     454     496 .. 0.46

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00021
   TIGR01648 235 ilyvrnlmletteeiieksfsefkpGavervkkird......yafvhfedredavkamdelnGkeleGseievtlakP 306
                  ly+r l   ttee ++  fs+   G       ++d       a + f+d   a  am elnG ++eG  + +  + P
  MMETSP1061-20121228|7599_1 271 KLYIRGLPWRTTEEAVQEYFSKCGSGPKSVELPLQDdgrssgTAILDFHDAASAAAAM-ELNGADFEGRWLSIKYSTP 347
                 49********************9876433333444422223379**********9999.6********9999877665 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 3.8e-09
   TIGR01648  42 kyGGPPPg...yegaqPerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavke 118
                 ky  P P      + +Pe  c vfvG +  d+ e+ l   f   G i ++r+  d   G+ +Gy  + f++ e++  avk 
  MMETSP1061-20121228|7599_1 343 KYSTPKPIlarETTQKPEGCCTVFVGNLSWDIDEESLRAAFADCGTITQVRFSTDrETGDFKGYGHLEFAETEATDAAVKM 423
                 77788776443346789999***********************************888********************996 PP

  == domain 3    score: -14.5 bits;  conditional E-value: 7
   TIGR01648 376 agsr.aaGvrGlglrGy.eayrg 396
                 +g r  +G rG g++G    +rg
  MMETSP1061-20121228|7599_1 463 GGGRfGSGDRGRGGGGRgRGGRG 485
                 22344566666655443122334 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   3.5       4.4   2.6e+03      63      76 ..      44      57 ..      20     140 .. 0.64
   2 !   26.3   0.0   1.1e-09   6.5e-07     107     184 ..     363     441 ..     354     445 .. 0.90

  Alignments for each domain:
  == domain 1    score: -5.4 bits;  conditional E-value: 4.4
   TIGR01645 63 iqkakkameqsikq 76
                 + akka + +ik+
  MMETSP1061-20121228|7599_1 44 AKEAKKAADEAIKK 57
                23333333333332 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1.1e-09
   TIGR01645 107 srv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafveevPeaallaleqmngallGGrnlkvgrPsnl 184
                 + v vG +s+++ e+ lr af+  G i  +  s d  t+  kg+  +e     a  a  +m g+ + Gr ++v+  ++ 
  MMETSP1061-20121228|7599_1 363 CTVfVGNLSWDIDEESLRAAFADCGTITQVRFSTDRETGDFKGYGHLEFAETEATDAAVKMAGTDILGRAVRVDFAQDK 441
                 6677********************************************7777788888899999999*****9977765 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.4   3.9         7   4.1e+03      73      73 ..     197     197 ..     144     235 .. 0.48
   2 !   23.3   0.0   1.6e-08   9.3e-06     143     301 ..     305     463 ..     259     491 .. 0.68

  Alignments for each domain:
  == domain 1    score: -8.4 bits;  conditional E-value: 7
   TIGR01659  73 a 73 
                  
  MMETSP1061-20121228|7599_1 197 E 197
                 1 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 1.6e-08
   TIGR01659 143 yktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyarpggesikdt........nlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeehgkakaahymsklglikygeygtgngg 301
                    g s g a++df   a +  a  +lng     + l + y+ p     ++t         ++v nl+  i ++ l + f   g+i q     d+ tg  +g   + f   e ++ a+          g++ l   +  +  + k + +   +g  ++g+ g g+ g
  MMETSP1061-20121228|7599_1 305 QDDGRSSGTAILDFHDAASA-AAAMELNGADFEGRWLSIKYSTPKPILARETtqkpegccTVFVGNLSWDIDEESLRAAFADCGTITQVRFSTDRETGDFKGYGHLEFAETEATDAAVKMA-------GTDILGRAVRVDFAQDKRQSFGGGFGGRGGGGRGRGGRG 463
                 4579999*******876655.56668*******999999999998766666522223333589*********************************************9988777666543.......333343333334445555555555553333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       454  (0.110678); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.83u 0.18s 00:00:01.01 Elapsed: 00:00:00.61
# Mc/sec: 1099.19
//
Query:       MMETSP1061-20121228|7606_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|7607_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 2122.38
//
Query:       MMETSP1061-20121228|7611_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       314  (0.076548); expected 82.0 (0.02)
Passed bias filter:                      188  (0.0458313); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1394.13
//
Query:       MMETSP1061-20121228|7612_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|7613_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-18   63.1   0.0    3.4e-18   62.7   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    7.4e-09   33.2   0.2    1.3e-08   32.4   0.1    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.7   0.0   1.7e-21   3.4e-18      17     187 ..      83     249 ..      70     255 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.7 bits;  conditional E-value: 1.7e-21
   TIGR03903  17 eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahda.GvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvta.k......sDlYaWGLivleCLtGkr 187
                  ++   a   Re++l   L hP iv+L++  +     ++ v e+v+G  l + +  +   +  e  r m   L a+   h++  +vhRDLkP+ni+ s     +h k+ DFG++ ++      d +     + + G+PaY aPe L      a +      +D+++ G+i+   LtGk+
  MMETSP1061-20121228|7613_1  83 RRNVNAAMMEREVNLLRSLDHPYIVKLVEVFVQRGVAMYLVMELVKGGDLFDCIVEKQRYSEVEARRAMRRLLSAVHYLHEEsNIVHRDLKPENILCSS---PTHVKLADFGLAKIMNA----DGL-----KTFCGTPAYFAPEVLQRRGTVAgRgrygkpADIWSLGVILYILLTGKP 249
                 3666788899*********************99999********************************************8637************996...5799******9877643....322.....4589*********884433332112233339***************96 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   6.1e-12   1.3e-08      35     140 ..      82     197 ..      67     203 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 6.1e-12
   TIGR03724  35 lDeklrkeRtrkEarllseakkag.vntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHk.agivhgDlttsNiivk.ddklyliDfGLgkksk 140
                 l +++++  + +E++ll+++ +   v+   v+     ++ +vme ++g +l d++ ek+        ++++++  +v  lH+  +ivh Dl ++Ni+ +  +++ l DfGL+k+ +
  MMETSP1061-20121228|7613_1  82 LRRNVNAAMMEREVNLLRSLDHPYiVKLVEVFVQRGVAMYLVMELVKGGDLFDCIVEKQRysevearRAMRRLLSAVHYLHEeSNIVHRDLKPENILCSsPTHVKLADFGLAKIMN 197
                 5566666777777777777766431455556666667899*************99887777999888889999999999997369*************6267899*******9866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1556.37
//
Query:       MMETSP1061-20121228|7617_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 477.67
//
Query:       MMETSP1061-20121228|7616_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.38
# Mc/sec: 1010.76
//
Query:       MMETSP1061-20121228|7619_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-27   93.0   0.4    3.5e-27   92.8   0.3    1.0  1  TIGR00811 sit: silicon transporter
  ------ inclusion threshold ------
      0.017   10.6   0.2      0.021   10.3   0.1    1.1  1  TIGR00918 2A060602: transmembrane receptor Patched


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.3   1.7e-30   3.5e-27      92     205 ..      16     130 ..       2     143 .. 0.90

  Alignments for each domain:
  == domain 1    score: 92.8 bits;  conditional E-value: 1.7e-30
   TIGR00811  92 kgnnldrylmgrqflvifinftinlcgaplegaevlglpeiltdiflgsgiamvltvvtigqltaqvnashcmldyinthfm.tftlyvtliievtgvmhscylirdmfyfaagk 205
                  g+ ++r+++grqflv+++ f  +l  + + g  + gl + +t +fl sg+a++++ + +gql aq+na+  mld++n +f+  f  yv+l+ie +g++hs+yl++ +f    g 
  MMETSP1061-20121228|7619_1  16 SGDAVERFIVGRQFLVVLVVFVSQLLSSAVPGVRLWGLSDPITAVFLDSGLALMVVTIVLGQLLAQLNAARSMLDFVNNYFVlYFVTYVSLLIEFSGLLHSVYLVQILFSKIGGS 130
                 58899************************************************99999*********************99726899******************9999877665 PP

>> TIGR00918  2A060602: transmembrane receptor Patched
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.1     1e-05     0.021    1065    1122 ..      70     132 ..      55     145 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1e-05
   TIGR00918 1065 vldGalstllgvlmlagsefdfivryffa.....vlavltvlGvlnglvllpvllsllGpepe 1122
                  v+  +l  ll+ l  a s +df+  yf+      v +++   G+l+++ l+ +l+s +G  ++
  MMETSP1061-20121228|7619_1   70 VVTIVLGQLLAQLNAARSMLDFVNNYFVLyfvtyVSLLIEFSGLLHSVYLVQILFSKIGGSTD 132 
                  455677889999999*******98888641111133445567****************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 866.54
//
Query:       MMETSP1061-20121228|7621_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 1086.71
//
Query:       MMETSP1061-20121228|7622_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.5e-153  511.0   1.1   6.4e-121  403.0   0.0    2.1  2  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
   1.1e-128  428.4   0.0   1.3e-128  428.1   0.0    1.1  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   2.3e-122  407.7   0.7    7.1e-96  320.1   0.0    2.0  2  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
    6.4e-05   20.4   0.0       0.15    9.4   0.0    2.5  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    0.00021   17.8   0.1    0.00058   16.3   0.0    1.8  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00073   16.7   0.2     0.0024   15.0   0.0    1.8  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0075   13.3   0.0      0.012   12.6   0.0    1.3  1  TIGR02974 phageshock_pspF: psp operon transcriptional activator
  ------ inclusion threshold ------
       0.01   13.2   0.0       0.03   11.7   0.0    1.8  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.018   11.9   0.0      0.048   10.5   0.0    1.7  1  TIGR02881 spore_V_K: stage V sporulation protein K
      0.026   11.9   0.1       0.14    9.6   0.0    2.1  1  TIGR00678 holB: DNA polymerase III, delta' subunit


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.8   0.2   5.4e-34   2.2e-31     319     399 ..       2      82 ..       1      89 [. 0.95
   2 !  403.0   0.0  1.6e-123  6.4e-121     524     845 ..      98     435 ..      84     441 .. 0.91

  Alignments for each domain:
  == domain 1    score: 106.8 bits;  conditional E-value: 5.4e-34
   TIGR03346 319 ekdaalerrfqkvlvdePsvedtisilrGlkeryevhhgvritdsalvaaatlshryitdrflPdkaidlideaaarlrme 399
                 ekdaalerr+q+v+ +ePs+ +t+ il+ + e ye hh+v+ + +alvaaa+ls+ry+tdrflPdkaidl+dea a  ++ 
  MMETSP1061-20121228|7622_1   2 EKDAALERRLQPVMCKEPSISETVDILQAIAESYEKHHKVKYSPEALVAAAKLSERYLTDRFLPDKAIDLMDEAGAIAHLS 82 
                 9*************************************************************************9976665 PP

  == domain 2    score: 403.0 bits;  conditional E-value: 1.6e-123
   TIGR03346 524 lkeevteeeiaevvsrwtGiPvskllegerekllkleeelkervvGqdeaveavadavrrsraglsdPnrPigsflflGptGvGktelakalaeflfddeealvridmseymekhsvarliGaPPGyvGyeeGGqlteavrrkpysvvlldevekahpdvfnvllqvlddGrltdgqGrtvdfkntviiltsnlgseaiqelaeeee.............aeevkeavmealraefrPeflnrideivvfkalekeeikeiveiqler.lrkrlaerklelelsdaaldllaeagyd..PvyGarPlkraiqkelenplakkllagevkegdtiavdv 845
                 +   v+e+ ++ev+s w+ iP+ kl  +e+++l++le  ++ rv Gq++a+++v+ avrr+r+gl+dPnrPi+sflf GptG Gktel+k+lae  + +e+ ++rid seymekhsv+rl G PPGy+GyeeGGqlteavrr p+svvllde+ekah dv+n+llq+l+dG ltdg+Grtv+fknt++i+tsn+gs+ i++l++ ++             + ++ e+v  al+++++Pe+lnr+deivvf++l+ +++++i+++ l++ +++  ae++l+++   a  ++++e+g      +GarP++ra q+  e+ ++++l++g +++gd+ +vd+
  MMETSP1061-20121228|7622_1  98 VVPIVDEHTVTEVISEWANIPLGKLESSEMNRLVQLEADMTLRVKGQQRAIQSVSRAVRRARSGLRDPNRPIASFLFCGPTGTGKTELCKTLAETYYGSEKDMIRIDCSEYMEKHSVSRLTGPPPGYIGYEEGGQLTEAVRRAPHSVVLLDELEKAHGDVLNILLQILEDGMLTDGKGRTVNFKNTILIMTSNVGSKNILSLSRMHSeglngapqdddllYGQLSETVKAALEDTMKPELLNRMDEIVVFSPLSDADLSSITSLILTKtVERAEAEQELKISAAPALSHKVMEEGSSnaAQFGARPMRRAAQRFFEDAVSDALVRGFLQKGDEAVVDL 435
                 445799*************************************************************************************************************************************************************************************************955433222222233333588899***************************************9988651677778999*************9998652268*******************************999986 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  428.1   0.0  3.2e-131  1.3e-128     331     733 ..       2     434 ..       1     435 [. 0.90

  Alignments for each domain:
  == domain 1    score: 428.1 bits;  conditional E-value: 3.2e-131
   TIGR02639 331 ekdkaLsrrfqkidveePskeetvkilkglkekyeefhkvkysdealeaavelsakyindrfLPDkaiDviDeaGaalrlkekakkkak...........vsvkdieevvakiakipeksvssddkekLknlekeLkkkifGqdeaiealvkaikrsraGlkeenkPvgsflfvGptGvGktelakqLaeel...gvellrfDmseymekhtvsrliGsPpGyvGfeeGGlLteavrknPyavlLlDeiekahpDilnilLqvmDyatLtDnsGrkadfrnvilimtsnaGakea....skakiGfaeekse.........eksekaikklfsPefrnrldaiikfedlseevlekivkkelee.lekkLaekkveleleddaikylaekgyde..efGarelkrvieeeikkkladeiLfGklkkGgevkve 733
                 ekd+aL rr q +  +ePs++etv+il+ + e+ye++hkvkys eal aa++ls++y++drfLPDkaiD++DeaGa+++l + + + +            v ++ + ev+++ a+ip  +++s++ ++L +le ++  ++ Gq++ai+++ +a++r+r+Gl+++n+P++sflf GptG Gktel+k+Lae+      +++r+D seymekh+vsrl G PpGy+G+eeGG+Lteavr+ P++v+LlDe+ekah D+lnilLq+++ + LtD +Gr ++f+n+ilimtsn+G+k++       + G+ +  ++         e+++ a++++++Pe  nr+d+i+ f++ls++ l+ i++  l++ +e+  ae++++++      + ++e+g ++  +fGar+++r  +  ++++++d ++ G l+kG e+ v+
  MMETSP1061-20121228|7622_1   2 EKDAALERRLQPVMCKEPSISETVDILQAIAESYEKHHKVKYSPEALVAAAKLSERYLTDRFLPDKAIDLMDEAGAIAHLSTYSVSGNDenedgekvvpiVDEHTVTEVISEWANIPLGKLESSEMNRLVQLEADMTLRVKGQQRAIQSVSRAVRRARSGLRDPNRPIASFLFCGPTGTGKTELCKTLAETYygsEKDMIRIDCSEYMEKHSVSRLTGPPPGYIGYEEGGQLTEAVRRAPHSVVLLDELEKAHGDVLNILLQILEDGMLTDGKGRTVNFKNTILIMTSNVGSKNIlslsRMHSEGLNGAPQDddllygqlsETVKAALEDTMKPELLNRMDEIVVFSPLSDADLSSITSLILTKtVERAEAEQELKISAAPALSHKVMEEGSSNaaQFGARPMRRAAQRFFEDAVSDALVRGFLQKGDEAVVD 434
                 8*******************************************************************************9876555545678999999999***************************************************************************************986322467**********************************************************************************************986322212233554332211112222337788999******************************9998762667778999*****999*******99875338******************************998876 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.5   0.2   7.2e-28     3e-25     333     414 ..       2      83 ..       1      92 [. 0.96
   2 !  320.1   0.0   1.7e-98   7.1e-96     522     838 ..      95     423 ..      80     436 .. 0.90

  Alignments for each domain:
  == domain 1    score: 86.5 bits;  conditional E-value: 7.2e-28
   TIGR03345 333 ekDaALtRRFqvvkveePdeekaiemlRglakvlekhhgveildeavkaavelsaRYisgRqLPDkavsllDtAcarvalsq 414
                 ekDaAL RR q+v  +eP+ ++++++l ++a+ +ekhh+v+ + ea++aa++ls+RY+++R LPDka++l+D A a  +ls 
  MMETSP1061-20121228|7622_1   2 EKDAALERRLQPVMCKEPSISETVDILQAIAESYEKHHKVKYSPEALVAAAKLSERYLTDRFLPDKAIDLMDEAGAIAHLST 83 
                 9**************************************************************************9888876 PP

  == domain 2    score: 320.1 bits;  conditional E-value: 1.7e-98
   TIGR03345 522 eplvsaevdeevvaevvadWtGiPvgrlvkdeiekvleleekleervvGqdealeaiaerirtarAgledpkkPlgvFllvGpsGvGktetalalAellyGgeqnlitinmsefqeaHtvstLkGsPPGYvGyGeGGvLteAvRrkPysvvLLDevekAhpdvlelFyqvFDkGvleDgeGreidfkntvilltsnvgsdliaelaadeeta....peae.....alaealrpeLlkvfkpAllgRl.evvpylplsdevlaeivelkleriakrlkenykaeleydealveeivar..ctevesGaRaidaileqtllpelseelLek 838
                  + v + vde++v+ev+++W  iP+g+l ++e++++++le++++ rv+Gq++a++++++++r ar gl+dp++P++ Fl++Gp G+Gkte   +lAe+ yG+e+ +i i+ se+ e+H+vs+L G PPGY+Gy eGG LteAvRr P+svvLLDe+ekAh dvl++  q+ + G+l+Dg+Gr+++fknt++++tsnvgs++i +l++ +++     p+ +     +l+e+++++L+++ kp ll R+ e+v + plsd  l++i++l l +  +r +++++++++   al +++++   +++ + GaR + +  ++    ++s++l++ 
  MMETSP1061-20121228|7622_1  95 GEKVVPIVDEHTVTEVISEWANIPLGKLESSEMNRLVQLEADMTLRVKGQQRAIQSVSRAVRRARSGLRDPNRPIASFLFCGPTGTGKTELCKTLAETYYGSEKDMIRIDCSEYMEKHSVSRLTGPPPGYIGYEEGGQLTEAVRRAPHSVVLLDELEKAHGDVLNILLQILEDGMLTDGKGRTVNFKNTILIMTSNVGSKNILSLSRMHSEGlngaPQDDdllygQLSETVKAALEDTMKPELLNRMdEIVVFSPLSDADLSSITSLILTKTVERAEAEQELKISAAPALSHKVMEEgsSNAAQFGARPMRRAAQRFFEDAVSDALVRG 423
                 5567899***************************************************************************************************************************************************************************************************9998766554455554442223367899*****************56999******************************************98622567789**9888777766666666665554 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00037      0.15       7      44 ..     151     192 ..     146     202 .. 0.73
   2 !    8.4   0.0   0.00073       0.3      98     135 ..     232     271 ..     228     290 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00037
   TIGR02640   7 vkrvtsralryl.ksgypvh...lrGPaGtGktslalhvakk 44 
                 v+r  +ra++ l + ++p+    + GP+GtGkt l   +a++
  MMETSP1061-20121228|7622_1 151 VSRAVRRARSGLrDPNRPIAsflFCGPTGTGKTELCKTLAET 192
                 5555666665552345555333389************99986 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00073
   TIGR02640  98 rltlavreG..ftlvydefsrskPeannvllsvleekvle 135
                 +lt+avr      ++ de+++++  + n+ll +le+++l+
  MMETSP1061-20121228|7622_1 232 QLTEAVRRAphSVVLLDELEKAHGDVLNILLQILEDGMLT 271
                 7999999763245668**********************96 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.57   2.3e+02     451     497 ..      43      89 ..      36      94 .. 0.71
   2 !   16.3   0.0   1.4e-06   0.00058     283     338 ..     140     195 ..     123     250 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.57
   TIGR03922 451 YspdElveiakrmaeerds.vlddaAaealleaatklaqestpdanGv 497
                 Ysp+ lv+ ak   +   +  l d+A + + + a  +a+ st++  G 
  MMETSP1061-20121228|7622_1  43 YSPEALVAAAKLSERYLTDrFLPDKAIDLM-DEAGAIAHLSTYSVSGN 89 
                 99*****99998877655505566666655.55677888888887774 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.4e-06
   TIGR03922 283 rvkeqvaalkssvevalvRaerGlavaqrs.kHlllaGPPGtGkttiArvvakiyaG 338
                 rvk q +a++s v  a++Ra+ Gl  ++r     l+ GP GtGkt + + +a+ y G
  MMETSP1061-20121228|7622_1 140 RVKGQQRAIQS-VSRAVRRARSGLRDPNRPiASFLFCGPTGTGKTELCKTLAETYYG 195
                 68888777765.777899*******999863689*******************9988 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.67   2.7e+02     190     269 ..      37     117 ..      19     156 .. 0.60
   2 !   15.0   0.0   5.9e-06    0.0024      33      60 ..     166     193 ..     139     213 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.67
   TIGR02397 190 kkekikveeeaLeliarkaeGslRDalslldqlislskg..kitlekveellglvseekllelleailkkdleealklleel 269
                 k+ k+k+++eaL + a+ +e  l D   l d++i l ++   i   +  ++ g  ++e+  +++  + ++ ++e+++   ++
  MMETSP1061-20121228|7622_1  37 KHHKVKYSPEALVAAAKLSERYLTDR-FLPDKAIDLMDEagAIAHLSTYSVSGNDENEDGEKVVPIVDEHTVTEVISEWANI 117
                 45678888888888888888877775.4666666655543456666666666666666666666666666666665555555 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 5.9e-06
   TIGR02397  33 nkiahayLfsGprGvGKTsiArilAkal 60 
                 n+   ++Lf+Gp G+GKT + + lA++ 
  MMETSP1061-20121228|7622_1 166 NRPIASFLFCGPTGTGKTELCKTLAETY 193
                 344579*******************876 PP

>> TIGR02974  phageshock_pspF: psp operon transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0     3e-05     0.012      25     143 ..     172     291 ..     143     307 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3e-05
   TIGR02974  25 vlviGerGtGkeLiaerlhyLskrWeqplvklncaalsenlleseLfGheaGaftGakk.rregrferadgGtlfLdelataslavqeklLrvieyGefervGgsktlkvdvrlvaatna 143
                  l  G  GtGk  + + l       e+++++++c+   e+   s L G   G     +  + +    ra    ++Ldel +a   v + lL+++e G +    g+++   ++ l+ ++n 
  MMETSP1061-20121228|7622_1 172 FLFCGPTGTGKTELCKTLAETYYGSEKDMIRIDCSEYMEKHSVSRLTGPPPGYIGYEEGgQLTEAVRRAPHSVVLLDELEKAHGDVLNILLQILEDGMLTDGKGRTVNFKNTILIMTSNV 291
                 488999*****999999998888999**********************99996654444144567889*****************************99876666655566667766665 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.4e-05      0.03      38      79 ..     169     210 ..     140     219 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.4e-05
   TIGR03420  38 erllylwGesgsGksHLLqAacaaaeeagksaiylplkelaq 79 
                   ++ ++G++g+Gk+ L + +++++   +k++i ++++e  +
  MMETSP1061-20121228|7622_1 169 IASFLFCGPTGTGKTELCKTLAETYYGSEKDMIRIDCSEYME 210
                 467899*******************************99865 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012     0.048      21      68 ..     148     195 ..     124     253 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
   TIGR02881  21 iyalilinekrkeeglkaekq.vlhmifkGnPGtGkttvarllaklfke 68 
                 i++++    +r+++gl++ +      +f G  GtGkt + + la+ ++ 
  MMETSP1061-20121228|7622_1 148 IQSVS-RAVRRARSGLRDPNRpIASFLFCGPTGTGKTELCKTLAETYYG 195
                 33222.246899****99766156799*****************99853 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00033      0.14      16      42 ..     171     197 ..     162     269 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00033
   TIGR00678  16 AlLfaGpeGvGkealaealakallCek 42 
                 ++Lf Gp G+Gk++l + la++   ++
  MMETSP1061-20121228|7622_1 171 SFLFCGPTGTGKTELCKTLAETYYGSE 197
                 68******************9998882 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.52
# Mc/sec: 1302.12
//
Query:       MMETSP1061-20121228|7623_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.095    8.9   6.8      0.087    9.0   4.7    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        1.4    5.3  12.8        1.5    5.2   8.8    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   4.7   4.2e-05     0.087     324     395 ..      10      75 ..       1     123 [. 0.43

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 4.2e-05
   TIGR02442 324 kkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvk 395
                 ++++++++++++++++++++ +++++      ++++g++++ +++++++++++++++++ +  +a++++++k
  MMETSP1061-20121228|7623_1  10 NNNNNSNNNNNNHNNSNNNH-NNNNSG-----SNNSGSNNSGSNNSNNNNSNSNNNSNSNSDGEAQEALSPK 75 
                 11111111111111111111.111111.....2222222222222222222222222222223333333333 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   8.8   0.00075       1.5     212     275 ..       7      70 ..       1      92 [. 0.44

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00075
   TIGR01651 212 eedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedae 275
                 ++ +++++ ++++++++ +++++++++s ++++ + ++ +++++++ ++++++  s+ d e  e
  MMETSP1061-20121228|7623_1   7 NNSNNNNNSNNNNNNHNNSNNNHNNNNSGSNNSGSNNSGSNNSNNNNSNSNNNSNSNSDGEAQE 70 
                 2222222223333333333333334444444444444444444444444444433333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|7624_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   13.4   0.1      0.028   12.3   0.1    1.5  1  TIGR02338 gimC_beta: prefoldin, beta subunit
      0.013   12.4   0.2      0.014   12.2   0.2    1.1  1  TIGR01953 NusA: transcription termination factor NusA


Domain annotation for each model (and alignments):
>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.3e-05     0.028      55      95 ..      20      60 ..       9      67 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.3e-05
   TIGR02338 55 svGnllvktdkeevleeLeekketlelrvktlekQeerlre 95
                ++Gn  +k++ e+v+ +L+e  et  + + tle+  + l++
  MMETSP1061-20121228|7624_1 20 TIGNEFYKKNMEKVQAKLKECAETQTMTLGTLERLSSALHT 60
                79********************************9888876 PP

>> TIGR01953  NusA: transcription termination factor NusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   6.9e-06     0.014     104     182 ..       2      83 ..       1     101 [. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 6.9e-06
   TIGR01953 104 vqaakqvleqkireaekeavldefkskvgeiisgkvervkkee..vlvelgkteallpkkeqipg.ekfklgdkikvlvkev 182
                 ++++++  + k r + + ++ +ef +k +e +++k ++ ++ +  +l+ l+++   l +     g + +  g++  +l +e+
  MMETSP1061-20121228|7624_1   2 AKSIRSKCKRKARSEFRATIGNEFYKKNMEKVQAKLKECAETQtmTLGTLERLSSALHTTTAEEGdDAMVTGEQTSILNEEL 83 
                 5788999999****************************77766678889999988888777665514566677776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       338  (0.0823988); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 714.94
//
Query:       MMETSP1061-20121228|7625_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1818.52
//
Query:       MMETSP1061-20121228|7627_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 671.42
//
Query:       MMETSP1061-20121228|7630_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 487.79
//
Query:       MMETSP1061-20121228|7629_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 2196.30
//
Query:       MMETSP1061-20121228|7634_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|7633_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1990.40
//
Query:       MMETSP1061-20121228|7636_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-08   31.9   0.0      4e-08   31.2   0.0    1.3  1  TIGR02180 GRX_euk: glutaredoxin
    3.3e-08   31.5   0.0    4.9e-08   31.0   0.0    1.4  1  TIGR02181 GRX_bact: glutaredoxin 3
    1.1e-07   29.5   0.0      2e-07   28.7   0.0    1.4  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    1.1e-06   26.3   0.0      2e-06   25.6   0.0    1.5  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    0.00015   20.1   0.0    0.00031   19.0   0.0    1.5  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   4.9e-11     4e-08       3      69 ..      97     162 ..      95     169 .. 0.87

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 4.9e-11
   TIGR02180   3 vfsKsyCpYckkakelLkklkvkkalevveldkl.engselqdyLkeltgqrtVPrifingkfiGGsd 69 
                 ++     p ckka e+++      ++++v ld+  e+g+ ++++L +  g+++VP +f++g+ iGG d
  MMETSP1061-20121228|7636_1  97 MYTWENSPSCKKAVEAFETI--GADVKIVRLDDPwEEGNPIRAVLGRKVGRTSVPFVFVGGEYIGGFD 162
                 566666799********955..545******9976999****************************87 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0     6e-11   4.9e-08       2      66 ..      96     163 ..      95     186 .. 0.85

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 6e-11
   TIGR02181   2 viYtkksCpycsrAkalLeekgvefeeievdkdk...eareemierskgrrtvPQifigdvhvGGcdd 66 
                 v+Yt+++ p c++A +  e+ g++++ +++d+     +  + ++ r  gr++vP +f+g + +GG+d 
  MMETSP1061-20121228|7636_1  96 VMYTWENSPSCKKAVEAFETIGADVKIVRLDDPWeegNPIRAVLGRKVGRTSVPFVFVGGEYIGGFDG 163
                 79****************************9866222445567788889*****************94 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.4e-10     2e-07      11      72 ..      96     162 ..      88     167 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 2.4e-10
   TIGR02190  11 svftkpGCPfCakakavLkekGldfeeivLgkdi.rtrslrav....tGattvPqvfinGkliGgsd 72 
                 +++t    P C ka ++ +  G d + + L+    ++  +rav     G+t+vP vf++G++iGg+d
  MMETSP1061-20121228|7636_1  96 VMYTWENSPSCKKAVEAFETIGADVKIVRLDDPWeEGNPIRAVlgrkVGRTSVPFVFVGGEYIGGFD 162
                 67778889**********************9876268899999333345799*************98 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   2.4e-09     2e-06       4      79 ..      89     165 ..      86     193 .] 0.74

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 2.4e-09
   TIGR02189   4 lvsekavvifskssCClshvvkrLllelGvnPavveldke.aeakeiekallelgskeavPvvfvGGklvGgleevm 79 
                  ++  + v+++ +    +  + + + ++G++  +v ld+  +e++ i ++l +  ++++vP vfvGG+++Gg++  +
  MMETSP1061-20121228|7636_1  89 TIASAPCVMYTWENSPSCKKAVEAFETIGADVKIVRLDDPwEEGNPIRAVLGRKVGRTSVPFVFVGGEYIGGFDGGI 165
                 566777888888777778888889*************9863677889999999889***************998533 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   3.8e-07   0.00031       3      65 ..      96     162 ..      94     167 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.8e-07
   TIGR02196   3 kvYttpwCppCkkakeyLkskgiafeeidvekdsaa....aeellkklgqrsvPvivigekivvGFd 65 
                  +Yt ++ p Ckka e++++ g + + +  ++  ++    ++ l +k g+ svP + +g++ + GFd
  MMETSP1061-20121228|7636_1  96 VMYTWENSPSCKKAVEAFETIGADVKIVRLDDPWEEgnpiRAVLGRKVGRTSVPFVFVGGEYIGGFD 162
                 69******************998888888766555511115567788899*********999****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1213.04
//
Query:       MMETSP1061-20121228|7639_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1218.36
//
Query:       MMETSP1061-20121228|7635_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1446.14
//
Query:       MMETSP1061-20121228|7640_1  [L=329]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (329 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 2067.83
//
Query:       MMETSP1061-20121228|7638_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1325.17
//
Query:       MMETSP1061-20121228|7643_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 603.38
//
Query:       MMETSP1061-20121228|7645_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1068.48
//
Query:       MMETSP1061-20121228|7644_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1887.44
//
Query:       MMETSP1061-20121228|7642_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 1106.68
//
Query:       MMETSP1061-20121228|7648_1  [L=990]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-120  400.4   0.0     2e-118  393.7   0.0    2.3  1  TIGR00583 mre11: DNA repair protein (mre11)
      5e-08   30.9   0.0    1.3e-05   23.0   0.0    2.6  2  TIGR00619 sbcd: exonuclease SbcCD, D subunit
     0.0084   13.4   0.0      0.085   10.1   0.0    2.1  2  TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR00583  mre11: DNA repair protein (mre11)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  393.7   0.0  1.5e-121    2e-118       2     404 ..     164     607 ..     163     608 .. 0.83

  Alignments for each domain:
  == domain 1    score: 393.7 bits;  conditional E-value: 1.5e-121
   TIGR00583   2 dtirilvstdnhvGygekdpvrkddsvktfeevlqiakeqdvdmvllgGdlfhenkPsrkslyqvlrslrkaclgdkPielellsdase........vfeesaf..tnvnyedpnlnvaiPvfsihGnhddasGdg....rlsaldllqatGlvnyfGkvseadeikvsPillqkGetklalyGlsavrderlvrtfkdnkvkflrPnlkked.......wfnllvlhqnhaahtst.sflpesllpdfldlviwGheheclidpvynpskgfevlqPGssvatslvpeealpkhvfilnikGrkfklekiplktvrpfvmkeivldevkslrpllktenkkevskrliekveekieeanaeakakraddev...................dee.....eepplPlirlkvdytadwldyqvenpkrfsnrfvgrvanandvvqfkkkk 404
                 dt+r+++stdnhvGy+e+d vr++ds+ ++eevl +ake   dmvll+Gdlfhen+Psr++l + +  +r++c+g   i+++++s ++         + ++s f  ++vnyed n  v +PvfsihGnhdd+s dg     ++aldll+++ lvnyfGk  ++++i v Pill+kG tk+alyGl+++rderl r ++ ++++f rP  ++++       wfn+++lhqn+   + + + + e+++pd++d+v wGhehec i+++      f + qPGssvatslv++e+++k++++l+++  +f+l+ ipl  vr+fv+  + l+e ++l p +  +   +vsk l ekv   i++a ++ ++  +d+e+                   d++     ++p+  l+rlkvd+t+    + + n +rf+ +fvg +an +d++ f +kk
  MMETSP1061-20121228|7648_1 164 DTLRVMISTDNHVGYAENDNVRGNDSFAALEEVLYLAKEYRCDMVLLAGDLFHENRPSRRTLIKTMDIFRRYCMGPGAIQIQVVSGSTSrrgnnnnnNGNKSPFvrGYVNYEDANYSVDLPVFSIHGNHDDPSRDGgnseLYAALDLLDVANLVNYFGKQEDTQNIRVDPILLRKGDTKVALYGLGSMRDERLNRMWRGENLTFSRPAETADQqdddnpgWFNIFALHQNRDRGRGAkNCVKEDMIPDWIDFVCWGHEHECDIELTESVVGTFRISQPGSSVATSLVEGESVRKKIAVLDVRQGQFRLTAIPLTQVRSFVVSTVRLSEQPRLDP-DDPKVDAKVSKVLEEKVRILIHDAREKRRELLTDAETqgnglarhcasdpssedssDMPlkhimNKPDEVLVRLKVDHTG----FAAVNNQRFGAKFVGDIANPTDILLFTRKK 607
                 99**********************************************************************************976531221111122333343368*************************8874445699****************************************************************7544322234777***********7766655****************************************************************99******************************.55666677888888888777777766655543332210111111111111111111222222224667779*******99....7899********************999887 PP

>> TIGR00619  sbcd: exonuclease SbcCD, D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   9.5e-09   1.3e-05       1      83 [.     166     249 ..     166     251 .. 0.84
   2 !    5.0   0.0    0.0029         4      76     104 ..     283     311 ..     261     336 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 9.5e-09
   TIGR00619   1 lriLHtsDwHlGktleevSrlaeqkafLddlleilkaeqvDallvAGDvFDkanPpaeaqelfaaflaklsdanp.lpivvisG 83 
                 lr++   D H+G   + + r ++  a+L+++l ++k+ + D++l+AGD F + +P+       ++ ++++      ++i v+sG
  MMETSP1061-20121228|7648_1 166 LRVMISTDNHVGYAENDNVRGNDSFAALEEVLYLAKEYRCDMVLLAGDLFHENRPSRRTLIKTMDIFRRYCMGPGaIQIQVVSG 249
                 5777788************************************************98776666667776655444466666665 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0029
   TIGR00619  76 lpivvisGNHDsadrlsaakkllkelgvf 104
                 lp+  i GNHD ++r  ++++l + l++ 
  MMETSP1061-20121228|7648_1 283 LPVFSIHGNHDDPSRDGGNSELYAALDLL 311
                 78999***********9999999888765 PP

>> TIGR04123  P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   6.2e-05     0.085      47      96 ..     187     236 ..     164     262 .. 0.79
   2 ?    0.5   0.0     0.053        73      99     111 ..     283     296 ..     275     326 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.2e-05
   TIGR04123  47 kdteatLerLealieelqpeelivlGDlfhdreaaerlelealaelrela 96 
                 +d+ a Le++  l +e++++ +++ GDlfh+++ + r+  ++++ +r+ +
  MMETSP1061-20121228|7648_1 187 NDSFAALEEVLYLAKEYRCDMVLLAGDLFHENRPSRRTLIKTMDIFRRYC 236
                 5677889999999********************99999888888877765 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.053
   TIGR04123  99 levvlveGNHDr.a 111
                 l v+ ++GNHD  +
  MMETSP1061-20121228|7648_1 283 LPVFSIHGNHDDpS 296
                 567889*****533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (990 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.45
# Mc/sec: 2903.76
//
Query:       MMETSP1061-20121228|7649_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.22
# Mc/sec: 2741.77
//
Query:       MMETSP1061-20121228|7651_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   14.2   0.0      0.011   14.0   0.0    1.1  1  TIGR01707 gspI: general secretion pathway protein I


Domain annotation for each model (and alignments):
>> TIGR01707  gspI: general secretion pathway protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.0   0.0   2.8e-06     0.011       2      54 ..       8      64 ..       7      84 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.8e-06
   TIGR01707  2 fTLlEvLvAla..ifalaalavls..avgestnaaerlrdktlAllvadnrlaelsl 54
                  L+Ev +A+   +f +  ++vl      +  +a+er r++ lA l+a n +a ++ 
  MMETSP1061-20121228|7651_1  8 RSLIEVVLAVCfvVFLVGFITVLCigNYFRAKRAQERQRQRRLAKLAASNNAAAAQG 64
                579****99862256666788765115668999*****************9986553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 539.96
//
Query:       MMETSP1061-20121228|7646_1  [L=864]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-05   20.8   0.0    4.9e-05   20.1   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
     0.0069   13.1   0.0      0.016   12.0   0.0    1.5  2  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   2.4e-08   4.9e-05      31     130 ..     326     432 ..     320     458 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.4e-08
   TIGR02160  31 yrfepGqhltlkaeldGeelrrsysicdavadgeirvavkkieGGlfst.....wanee.iraGdt....levmaPqGrftskldaerakhyvavaaGsGitPilaivkt 130
                 ++f+ Gq+  l+ +   +e    ysi + +++ +++  + + eG  +++     +  e  ++  d+    +evm P G   s+ +     h +a+ aG+G+ Pil++ k 
  MMETSP1061-20121228|7646_1 326 FEFNSGQYAYLRINAINNE-WHPYSIASRPDSLTLQFYIEVHEGKTWTKqlwnlFYDEAtLKRNDAeslkIEVMGPYGSSLSRGQKY--SHILAIGAGTGVVPILSMYKE 432
                 89**********9876555.679*********************988753322233333588776444449*******988877666..9****************9775 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   7.6e-06     0.016     249     288 ..     394     432 ..     355     444 .. 0.82
   2 ?   -3.7   0.0      0.43   8.8e+02     286     319 ..     490     525 ..     479     530 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 7.6e-06
   TIGR03224 249 kvqvigpfgstflmpnhpessilmictgtgsapmramter 288
                 k++v+gp+gs+ l    + s+il i +gtg  p+ +m + 
  MMETSP1061-20121228|7646_1 394 KIEVMGPYGSS-LSRGQKYSHILAIGAGTGVVPILSMYKE 432
                 899******99.5677899***************999654 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.43
   TIGR03224 286 terrrrrrakg..eggklllffgartkeelpyfgpl 319
                 +  rr   +++  ++   + ff + t   lp +g +
  MMETSP1061-20121228|7646_1 490 AASRRNSCNHDelKSNDHVTFFKSATAATLPIYGTV 525
                 455555555554478899999999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.30
# Mc/sec: 3801.29
//
Query:       MMETSP1061-20121228|7650_1  [L=1102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-06   26.0   0.0     0.0027   15.2   0.0    2.4  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    1.1e-05   23.0   0.0    0.00021   18.8   0.0    2.3  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    0.00023   18.1   0.0    0.00052   16.9   0.0    1.6  1  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    0.00023   18.5   0.0      0.011   13.1   0.0    2.2  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    0.00088   16.5   0.0     0.0027   15.0   0.0    1.7  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00044      0.36      97     116 ..     228     248 ..     212     256 .. 0.82
   2 !   15.2   0.0   3.2e-06    0.0027     224     274 ..     399     451 ..     382     460 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00044
   TIGR01250  97 k.fyllgqSwGglLaqeYalk 116
                 + +yl+g+S+Gg+L+ + al+
  MMETSP1061-20121228|7650_1 228 RpVYLIGESFGGMLTSAVALQ 248
                 469************998876 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 3.2e-06
   TIGR01250 224 tdklkeIkvPtLltvgefdem..tpeaaremqekiaksrlvvfedgshltmie 274
                 + +lk++ +P+L++vg  d++  + e a+++ + ++ks+  ++ed++hl + e
  MMETSP1061-20121228|7650_1 399 ESRLKQLDIPSLVVVGSEDNLlkSREEAKRLTKLLPKSQQLTVEDAGHLILDE 451
                 689****************87336789*********************97644 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.049        40      56      86 ..     219     249 ..     176     255 .. 0.88
   2 !   18.8   0.0   2.6e-07   0.00021     168     227 ..     386     446 ..     329     459 .. 0.67

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.049
   TIGR01738  56 aeailaqapakaiwlGWsLGGLvalhlalth 86 
                  e i+  ++++  ++G s GG++ + +al+ 
  MMETSP1061-20121228|7650_1 219 LEEIVGTTDRPVYLIGESFGGMLTSAVALQV 249
                 56788899*******************9975 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.6e-07
   TIGR01738 168 LqagLellaevDlRralqkisvPvLrlyGqkDalvPak.vvealdklapqsellvlekaah 227
                 +++ L +   v + + l+++++P+L ++G  D+l  ++  ++ l+kl+p+s+ l++e+a+h
  MMETSP1061-20121228|7650_1 386 IKNWLMVGSSVLVESRLKQLDIPSLVVVGSEDNLLKSReEAKRLTKLLPKSQQLTVEDAGH 446
                 3445666677778899*****************9865527899*****************9 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   6.3e-07   0.00052     213     274 ..     399     461 ..     392     465 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 6.3e-07
   TIGR03056 213 qralpriavPvlliageedkavpp.dvskeaatrlplatlrevpGlGhlvheedadgvaglil 274
                 + +l+++++P l+++g ed+ + + +++k++++ lp +   +v+ +Ghl+ +e+ ++  +++ 
  MMETSP1061-20121228|7650_1 399 ESRLKQLDIPSLVVVGSEDNLLKSrEEAKRLTKLLPKSQQLTVEDAGHLILDEKVNLTEAILY 461
                 5789****************986616799*************************999988875 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.015        12      50      93 ..     205     250 ..     198     255 .. 0.68
   2 !   13.1   0.0   1.3e-05     0.011     182     242 ..     393     455 ..     384     464 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.015
   TIGR03695  50 akdfeeaaqe...llkelleklkiekviLvGYSlGGRialalaleap 93 
                 +++f++ +q     l+e+    + ++v+L+G S GG +  a+al+  
  MMETSP1061-20121228|7650_1 205 RTSFHQLVQTpvkFLEEIVGT-TDRPVYLIGESFGGMLTSAVALQVL 250
                 455555555500034555555.889*************999999865 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.3e-05
   TIGR03695 182 gkqpslweklkelklpvlylvGekDe..kFkkiakemqkllpalklevieeaGHnihlenpea 242
                 g+     ++lk+l++p l +vG++D+  k ++ ak+++kllp+++  ++e+aGH i  e+ + 
  MMETSP1061-20121228|7650_1 393 GSSVLVESRLKQLDIPSLVVVGSEDNllKSREEAKRLTKLLPKSQQLTVEDAGHLILDEKVNL 455
                 555566789****************85577899*********************998887665 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.76   6.2e+02      82     103 ..     231     252 ..     212     255 .. 0.84
   2 !   15.0   0.0   3.2e-06    0.0027     187     238 ..     400     452 ..     395     464 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.76
   TIGR02427  82 avcGlSlGGliaqaLaarrpdr 103
                  ++G S GG+++ a a++  +r
  MMETSP1061-20121228|7650_1 231 YLIGESFGGMLTSAVALQVLKR 252
                 57999*****999999887766 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 3.2e-06
   TIGR02427 187 erleeiavPtlviaGdeDgstPp.elvreiadlvpgarfaeieeaaHlpnleq 238
                  rl+++ +P lv++G+eD      e+++++ +l+p+++  ++e+a+Hl   e+
  MMETSP1061-20121228|7650_1 400 SRLKQLDIPSLVVVGSEDNLLKSrEEAKRLTKLLPKSQQLTVEDAGHLILDEK 452
                 6899**************98655169*********************976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.38
# Mc/sec: 3827.68
//
Query:       MMETSP1061-20121228|7654_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 510.74
//
Query:       MMETSP1061-20121228|7655_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 422.37
//
Query:       MMETSP1061-20121228|7656_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11    7.9   3.4       0.14    7.5   2.4    1.0  1  TIGR00917 2A060601: Niemann-Pick C type protein family


Domain annotation for each model (and alignments):
>> TIGR00917  2A060601: Niemann-Pick C type protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   2.4   3.4e-05      0.14     267     319 ..      29      82 ..      14      88 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 3.4e-05
   TIGR00917 267 skkktsssselsevdaeisssen.dsdksesqrnekqsaavetilerfftkyGs 319
                 s+  +s ss +s+ +++ ss++n ++++++s+ n+k+ +  + +  +++ +yG 
  MMETSP1061-20121228|7656_1  29 SSNSNSNSSPSSNHNNNSSSNNNhNNNNNNSSSNKKKRNLSQRHSTTWYVRYGC 82 
                 2223333333334444444443313446788888999999999999******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 918.42
//
Query:       MMETSP1061-20121228|7658_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 889.19
//
Query:       MMETSP1061-20121228|7661_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 810.79
//
Query:       MMETSP1061-20121228|7665_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|7664_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 2120.34
//
Query:       MMETSP1061-20121228|7666_1  [L=566]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-35  120.7   0.0    1.9e-35  120.3   0.0    1.1  1  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
    4.2e-18   63.1   0.0    1.4e-17   61.3   0.0    1.7  1  TIGR01788 Glu-decarb-GAD: glutamate decarboxylase
    2.9e-12   43.6   0.0    5.6e-12   42.6   0.0    1.4  1  TIGR03799 NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
    0.00017   18.0   0.1     0.0076   12.6   0.0    2.1  2  TIGR03811 tyr_de_CO2_Ent: tyrosine decarboxylase
     0.0014   15.6   0.0     0.0023   14.8   0.0    1.3  1  TIGR02539 SepCysS: Sep-tRNA:Cys-tRNA synthase
  ------ inclusion threshold ------
      0.012   12.3   0.0      0.021   11.5   0.0    1.3  1  TIGR01979 sufS: cysteine desulfurase, SufS family


Domain annotation for each model (and alignments):
>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.0   2.7e-38   1.9e-35      42     372 ..     209     535 ..     203     538 .. 0.84

  Alignments for each domain:
  == domain 1    score: 120.3 bits;  conditional E-value: 2.7e-38
   TIGR03812  42 kfletnLGDpgLfk....Gtkkleeevvellgellhlke..alGyivsGGteanilalraaknlakeekkekpeiivPesahfsfekaaellglelvkaeldeeykvdvkkveeliednt..iglvgi.aGttelGlvDdieelskiakendly.....lhvDaafGGfviPflkkkgeklakfDfklkGvksitiDPhkmGlapiPaGgllfrekeylksleveapyLtekkqatlvGtrsGasaaatyavlkylGreGyrkvveecmeltrylveelkklglepviePvlnivaleaedleevekklkekgwivsvtrapkalrlvlmphvkkehieefledl 372
                 k+  +nLGDp + +     ++++e+ v++ ++ l ++++    Gy+++ Gte n+  + +a++++         +   +  h+s  kaa    ++l+  +     +++ + +e+ +  n    +++ +  Gtt  G+vD+++++ +i    +++     +h D a+  +++Pf+   ++  ++  f+   ++s+++  hkm  +p+P+G  l r+++ +k++e + +yL +  ++t++G r G sa+  +  l+  G eG +k ve+cme+++yl+++l + g++  ++ +   v le +  +        k w++++ +   +  +v+mp v++++i+ f+++l
  MMETSP1061-20121228|7666_1 209 KYSINNLGDPYVQSnysvHSRQFERAVIDFFARLWKAEKdsYWGYVTTSGTEGNLHGILVARECHPDGI-----LYTSNETHYSVFKAARYYRMDLRSIPTLPMGEINYDLLEQELAANRdkPAIINVnIGTTVKGAVDNLDRVIDILARLEIPrerfhIHCDGALFALMMPFI---DNAAHQVSFEK-PIDSVAVSGHKMLGCPMPCGVTLSRKEN-VKKVESHIEYLNS-VDTTIMGSRNGQSALYMWYSLRKKGLEGIQKDVEHCMETAKYLRDKLSDAGISCRLNDLSSTVVLERPVDDAFI-----KRWQLACEED--IAHVVVMPNVTRNKIDLFVDEL 535
                 67889*****876522225899************998651157*****************999876554.....6677889****************999999999999999988876654467887735************999988776663333339**************...33334556664.68******************99998766.677899*****75.689************************************************99999988888888876555533.....4599988777..5699***************987 PP

>> TIGR01788  Glu-decarb-GAD: glutamate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.0   2.1e-20   1.4e-17      80     351 ..     230     485 ..     199     509 .. 0.81

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 2.1e-20
   TIGR01788  80 elenrcvnmladLfnaelkdeeavGtstiGsseaimLgglamkkrWrkrmkaaGkdadkPnlvlgsavqvcwekfaryfevelrlvp...vekdrlvldpeevvelvdentigvvailGttytGeledvkklndlLeeleaktgldvpihvdaasGGfivPfvepdle.WdfrlprvvsinvsGhkyGLvypGvGwviwrdeeaLpeeLifkvnyLGgeeetftlnfsrpasqvvaqyynflrlGkeGyrkimqklldvaralaeeleklgafeil 351
                 + e+ ++++ a+L++ae kd +  G  t+  +e  + g l  +                  l ++++++ +  k+ary+ ++lr +p   + + ++ l  +e+++  d  +i   + +Gtt +G +++++++ d+L +le  ++   +ih d+a   +++Pf++   +   f+ + + s+ vsGhk       +G  + r+e+   +++  +++yL +     t+  sr ++  +  +y + + G eG +k +++++++a++l+++l++ g    l
  MMETSP1061-20121228|7666_1 230 QFERAVIDFFARLWKAE-KD-SYWGYVTTSGTEGNLHGILVARECHP-----------DGILYTSNETHYSVFKAARYYRMDLRSIPtlpMGEINYDLLEQELAANRDKPAII-NVNIGTTVKGAVDNLDRVIDILARLEIPRE-RFHIHCDGALFALMMPFIDNAAHqVSFE-KPIDSVAVSGHKMLGCPMPCGVTLSRKENV--KKVESHIEYLNSVDT--TIMGSRNGQSALYMWYSLRKKGLEGIQKDVEHCMETAKYLRDKLSDAGISCRL 485
                 67777888888888888.55.67788888888888888776543322...........2346789999999*************98622266667888888888899999885.5567*********************97665.799***************9776515565.5699********9888999*****999986..56778*****98765..5678****************************************999865555 PP

>> TIGR03799  NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   8.1e-15   5.6e-12     212     416 ..     278     476 ..     240     480 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 8.1e-15
   TIGR03799 212 ilvserGhyslkkaadvlGiGrdnlvavktdennridvdklreklkelkeknikvlaivGv.aGttetGnvdPldeladiaqeldc.....hfhvdaawGGatl.lsekyrkllkGieradsvtidahkqlyvPmGaGlvlfkdPalvkaiehhaeyilrkGskdlGshtleGsrsgm.amlvyaslkiigrkGyellidqsiekakyfaeli 416
                 +  s+  hys+ kaa      r +l +++t     i+ d l+++l+   +++ k+ ai+ v  Gtt  G vd ld + di  +l+      h h d a     + + ++  + ++  +  dsv++ +hk l  Pm  G+ l ++ + vk++e h ey+    s d   +t+ Gsr+g  a+ ++ sl+  g +G +  +++++e aky+ + +
  MMETSP1061-20121228|7666_1 278 LYTSNETHYSVFKAARYY---RMDLRSIPTLPMGEINYDLLEQELA---ANRDKP-AIINVnIGTTVKGAVDNLDRVIDILARLEIprerfHIHCDGALFALMMpFIDNAAHQVSFEKPIDSVAVSGHKMLGCPMPCGVTLSRK-ENVKKVESHIEYL---NSVD---TTIMGSRNGQsALYMWYSLRKKGLEGIQKDVEHCMETAKYLRDKL 476
                 4579999********876...67899999999*******9997655...555555.4555526****************98776533332278888776544333678888888888889******************999887.56899*******8...4666...79******973677999**********************987765 PP

>> TIGR03811  tyr_de_CO2_Ent: tyrosine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0063       4.3     116     163 ..     223     272 ..     197     280 .. 0.83
   2 !   12.6   0.0   1.1e-05    0.0076     230     335 ..     283     381 ..     275     399 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0063
   TIGR03811 116 esspatsqmeeevgkefakllgy..kngwghivadgslanleglwyarni 163
                 + s  + q+e  v   fa+l +   +  wg++ + g+  nl g+  ar+ 
  MMETSP1061-20121228|7666_1 223 NYSVHSRQFERAVIDFFARLWKAekDSYWGYVTTSGTEGNLHGILVAREC 272
                 4566778999999999****87611567******************9975 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.1e-05
   TIGR03811 230 tkhyswlkaadiigigldqvipvpvds.nyrldinelekiirelaaekipilgvvgvvgsteegavdsidkivalreklvkegiyfylhvdaayggyaralfldedd 335
                   hys +kaa    + l  + + p+ + ny    + le+ +   a+++ p +  v  +g+t +gavd++d+++++  +l      f++h d a  +     f+d+  
  MMETSP1061-20121228|7666_1 283 ETHYSVFKAARYYRMDLRSIPTLPMGEiNY----DLLEQELA--ANRDKPAIINVN-IGTTVKGAVDNLDRVIDILARLEIPRERFHIHCDGALFALMMP-FIDNAA 381
                 569999999999999998888888754244....34554432..445566654444.79********************************997665433.555555 PP

>> TIGR02539  SepCysS: Sep-tRNA:Cys-tRNA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   3.4e-06    0.0023      87     289 ..     272     481 ..     229     491 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.4e-06
   TIGR02539  87 ckeGdvvvldglahytsyvaaeraglevkevpetgspeykvkleeykevieevedesgkevalallthvdgeyGnladakkvakvcrkkgvp...lllnc.....aytvGrlpvsakevk....adfivgsGhksmaasapvGvlalkeeyedkvlrksrkfkvkevellGctsrGapivtllasfpe.vvervkr.wdeevkktrylvkeledigv 289
                 c++  ++   + +hy+ + aa   +++++ +p    p  +++ +  ++ +    d+    +a++ +    +  G + + ++v ++  + ++p   + + c     a  +  ++ +a++v      d +  sGhk +    p+Gv   ++e  +kv  + ++ +  +  ++G    G + + +  s+ +   e +++  ++ ++ ++yl ++l d g+
  MMETSP1061-20121228|7666_1 272 CHPDGILYTSNETHYSVFKAARYYRMDLRSIPT--LPMGEINYDLLEQELAANRDK----PAIINVNIGTTVKGAVDNLDRVIDILARLEIPrerFHIHCdgalfALMMPFIDNAAHQVSfekpIDSVAVSGHKMLGCPMPCGVTLSRKENVKKVESHIEYLNSVDTTIMGSR-NGQSALYMWYSLRKkGLEGIQKdVEHCMETAKYLRDKLSDAGI 481
                 6666666677889******************96..577778777776666665555....666666666666677777789999999999995554455532222233333444444433222268999**************************999999999999999965.5777777888876514666655145557788899888888776 PP

>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0     3e-05     0.021     111     242 ..     277     421 ..     252     433 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3e-05
   TIGR01979 111 ivvseleHHanivpwqllakrkgaklkvieldedgtldleeleellt...ektklvaithvsNvlGtvnpveeiiklahevga.....lvlvDgaqavphlk.vdvkeldvDf......lvfsgHKllg.ptGiGvLygkkelLeklp 242
                 i+ +  e H  +    ++a+   ++l+ i+  + g+++ + le+ l    +k  ++ +   + v G+v +++ +i+++ + ++      +  Dga  +  ++ +d ++ +v f      +++sgHK+lg p+  Gv  ++ke ++k++
  MMETSP1061-20121228|7666_1 277 ILYTSNETHYSVF---KAARYYRMDLRSIPTLPMGEINYDLLEQELAanrDKPAIINVNIGTTVKGAVDNLDRVIDILARLEIprerfHIHCDGALFALMMPfIDNAAHQVSFekpidsVAVSGHKMLGcPMPCGVTLSRKENVKKVE 421
                 5555555554443...45677788999999999999999999998751114567888888999******99999987665544222227899**98776665477776665443333339********8799****999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (566 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 2134.45
//
Query:       MMETSP1061-20121228|7667_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1900.64
//
Query:       MMETSP1061-20121228|7659_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-121  404.3   1.2   1.4e-121  404.1   0.8    1.0  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.2e-25   88.0   0.1    1.3e-21   74.6   0.0    2.1  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
      0.001   17.1   0.1     0.0016   16.4   0.1    1.3  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB
  ------ inclusion threshold ------
       0.11    9.9  20.0      0.053   11.0   5.5    2.3  2  TIGR02642 phage_xxxx: uncharacterized phage protein
        0.5    8.3   4.8        1.4    6.8   0.1    2.4  2  TIGR00100 hypA: hydrogenase nickel insertion protein HypA


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.1   0.8  1.7e-124  1.4e-121       1     352 [.      73     435 ..      73     437 .. 0.95

  Alignments for each domain:
  == domain 1    score: 404.1 bits;  conditional E-value: 1.7e-124
   TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgd...igdifeeffggggg.......sgrr.rskarrgedlevelelsleeavkGvekeielerkekCetCkGsGakkgsklktCktCgGtGqvrkqqgtllgffqsqqtCseCkGeGkiikekCkeCkGkgrvkekkkievkiPaGvedgerlrvegkGeagenggesGdLyvevkvkehkiferegndllvevpisfvqailgeeievptlegkvklkipagtqsgevlrlkgkGvkklksk.krGdllvkvkvevPkklskeekelleelae 352
                 d+Y iLg+s++As++eik+A+r++ak+ HPD+n+  k++ e+f+e+n+AyevL++++ +++YD fg++g+  +a+++g+g  +   + fg+   ++dif++ffggggg       + r+ ++ +  g+dl+++le++++ av+G e ++++++ e+C+tC+GsG k+gsk++tC +CgG+G+++++++t+lg fq+qqtC++C+G+G+ ++e C +C G+g ++++k+i+v +PaGvedg++lrv+g+G+ag ngg+sGdLy+ ++vke+ +f+reg ++++e +is+++ailg++i+ p+++g+v++k+p+gtq+g+v+rlkg+G+++l +  +rGd++v+vkv++Pk+lskee+el+e+l++
  MMETSP1061-20121228|7659_1  73 DFYRILGISRNASTKEIKSAFRQKAKQLHPDANP-GKDTTEQFQEVNRAYEVLKNPDLKKKYDMFGESGVGTSAASEGQGSPFGGGAGFGQevdLNDIFDSFFGGGGGfgggggpRARQqPRGPVVGNDLRFDLEIDFKTAVFGGEEKVRIRHLETCDTCSGSGVKPGSKISTCANCGGSGVTVEVTRTPLGNFQTQQTCPSCRGTGQKVEEYCGTCGGQGLNQKTKQIKVTVPAGVEDGNKLRVRGEGDAGPNGGPSGDLYIFLRVKEDAKFRREGPEIYSEETISYIDAILGNSIKTPVVDGEVTIKVPPGTQPGQVMRLKGNGAPRLGNPnQRGDHYVTVKVDIPKDLSKEEEELIEKLRA 435
                 9*********************************.8899********************************9988866666555555666667799********9988778877633335888999************************************************************************************************************************************************************************************************************9988***************************976 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.6   0.0   1.6e-24   1.3e-21       2      78 ..      72     148 ..      71     174 .. 0.87
   2 !   11.5   0.0   1.8e-05     0.015     716     816 ..     317     420 ..     280     433 .. 0.88

  Alignments for each domain:
  == domain 1    score: 74.6 bits;  conditional E-value: 1.6e-24
   TIGR03835   2 rDyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDreddld 78 
                 rD+y +Lgi+r+a  +eik afr+ ak+ hPD n   d  + f+e+n a++vL nP+ +++yD +G  Gv    + +
  MMETSP1061-20121228|7659_1  72 RDFYRILGISRNASTKEIKSAFRQKAKQLHPDANPGKDTTEQFQEVNRAYEVLKNPDLKKKYDMFGESGVGTSAASE 148
                 9********************************************************************98766655 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 1.8e-05
   TIGR03835 716 kGfGhdfgkgl..GDLkvvlkvipsnffqikeddlhvaalvDPlvaynGGiidvfgivklikvkieggikvndlvkikdlGl..tktkykkGsLivqlvyssvak 816
                 +G G+  ++g   GDL + l+v +   f  +  +++++  +  + a  G  i+ + +  ++ +k+++g++ ++++++k  G   +    ++G+ +v +   +++k
  MMETSP1061-20121228|7659_1 317 RGEGDAGPNGGpsGDLYIFLRVKEDAKFRREGPEIYSEETISYIDAILGNSIKTPVVDGEVTIKVPPGTQPGQVMRLKGNGAprLGNPNQRGDHYVTVK-VDIPK 420
                 5667777777667********************************************************************955445679999999874.46666 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1     2e-06    0.0016       5      53 ..      86     130 ..      83     137 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2e-06
   TIGR00714   5 ekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkR 53 
                 +k ++  +r+  kq+HPD ++  ++     +q  e+N Ay+ Lk+p ++
  MMETSP1061-20121228|7659_1  86 TKEIKSAFRQKAKQLHPD-ANPGKD---TTEQFQEVNRAYEVLKNPDLK 130
                 5778899***********.455555...8999*************9554 PP

>> TIGR02642  phage_xxxx: uncharacterized phage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   2.8     0.005       4.1     182     210 ..     226     255 ..     219     265 .. 0.87
   2 ?   11.0   5.5   6.5e-05     0.053     180     211 ..     267     296 ..     260     302 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.005
   TIGR02642 182 qkCPrCrgtgltlrrq.eeCdkCaGtGrlv 210
                 ++C  C g+g ++  +   C +C+G+G  v
  MMETSP1061-20121228|7659_1 226 ETCDTCSGSGVKPGSKiSTCANCGGSGVTV 255
                 68***********9999*********9654 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 6.5e-05
   TIGR02642 180 esqkCPrCrgtgltlrrqeeCdkCaGtGrlvp 211
                  +q+CP Crgtg+  + +e C +C+G G  ++
  MMETSP1061-20121228|7659_1 267 TQQTCPSCRGTGQ--KVEEYCGTCGGQGLNQK 296
                 679********95..7789********96555 PP

>> TIGR00100  hypA: hydrogenase nickel insertion protein HypA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.1    0.0017       1.4      44     101 ..     201     256 ..     195     262 .. 0.67
   2 ?    2.9   0.6     0.029        24      85     101 ..     266     282 ..     258     301 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0017
   TIGR00100  44 lkfafevvsegtvaeg.akleieeekveieCedcseevepeideldkCpkCkskelkvr 101
                 l+f +e+  + +v  g  k+ i   ++   C +cs    +   ++ +C +C++  ++v+
  MMETSP1061-20121228|7659_1 201 LRFDLEIDFKTAVFGGeEKVRIR--HL-ETCDTCSGSGVKPGSKISTCANCGGSGVTVE 256
                 66666666655555442333333..33.369999977666669**********998886 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.029
   TIGR00100  85 deldkCpkCkskelkvr 101
                 +++++Cp C+++ +kv+
  MMETSP1061-20121228|7659_1 266 QTQQTCPSCRGTGQKVE 282
                 66789999999988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 2214.48
//
Query:       MMETSP1061-20121228|7669_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.40
# Mc/sec: 2926.86
//
Query:       MMETSP1061-20121228|7671_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 490.25
//
Query:       MMETSP1061-20121228|7672_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1417.15
//
Query:       MMETSP1061-20121228|7673_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-77  256.3   0.1      1e-76  255.7   0.0    1.2  1  TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
  ------ inclusion threshold ------
      0.023   12.7   0.0      0.089   10.8   0.0    2.0  2  TIGR01997 sufA_proteo: FeS assembly scaffold SufA


Domain annotation for each model (and alignments):
>> TIGR00216  ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.7   0.0   4.9e-80     1e-76       3     276 ..     109     455 ..     107     459 .. 0.90

  Alignments for each domain:
  == domain 1    score: 255.7 bits;  conditional E-value: 4.9e-80
   TIGR00216   3 ilakalGfCfGVerAvkiaeeark.elgkkvyvlgeivHNkevverLrekgvali.......ledldelakgdtviirahGvskevleelekkglevvdaTCPlVtkvhkevkklakkgykviliGkknHpEvigiegevpek........ailvedl.............eeleelkla.....dek....rlvvvsQTTlskeeteeivkllkkrlpekeveve........ntiCdaTqerqdavkelake.....vdlllviggknSsNtkrLleiaeeeglksvliesaeelk......................eeilkavkvvgitaGaStPdkvveevi 276
                 +lak +GfC+GVer ++ a+ea +  +++k+ +++e++HN+ev+++L++++v+li       ++d++ +++gd+vi++a+G+s e++e   kk++evvd+TCP+V+kv+++v k+++kg ++i++Gk+ H+E+ ++++ +++         a++v d+             ++l+++++a     d++    ++++++QTT+ k+et++i +l++k + + ++++e        +tiCdaTqerqdav+el+++     +d++lv+gg +SsNt +Llei +++g++s++i++a+ +                        +    + ++g+t+GaStPd  v+e +
  MMETSP1061-20121228|7673_1 109 YLAKDFGFCWGVERSIALAYEAVEqYPDRKLHITNELIHNPEVNDALTNMKVNLIakesttgTKDFSPVEDGDVVILPAFGASYEEMEMFDKKNVEVVDTTCPWVSKVWNAVDKHQRKGLTSIIHGKYAHEETLATTSFCEDYicvkdmkeAQMVADYmekgadntpedkaAFLKYFEKAvsegfDPDtmlgKIGLANQTTMYKKETKAIGQLFQKSIMKIHGPAEvdqhymefDTICDATQERQDAVSELVENasglgLDFILVVGGWDSSNTAHLLEIPHKAGIRSFHINRADCIGadntithrtvdgeivtekflltLDEPDREVILGVTSGASTPDGSVQEAL 455
                 79*******************99857899**************************9***9999***************************************************************************8887755556666677777699999999998887777777445567744456889*******************************999*************************984444459*****************************************************9998865555555669**********9999865 PP

>> TIGR01997  sufA_proteo: FeS assembly scaffold SufA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   4.3e-05     0.089      22      66 ..      70     112 ..      59     120 .. 0.84
   2 ?   -3.3   0.0         1   2.1e+03      41      56 ..     142     157 ..     139     162 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 4.3e-05
   TIGR01997  22 eavgirlsvkktGcaGleyalelvsepkeddvllekdGakvfvap 66 
                 + + +r sv +t     ey+ +lv++ k+++ ll+kdG+k ++a 
  MMETSP1061-20121228|7673_1  70 GFKEVRTSVEET--MEQEYKSDLVEDLKSNNYLLQKDGVKTYLAK 112
                 566777777776..4679**********************99875 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 1
   TIGR01997  41 alelvsepkeddvlle 56 
                 + el+++p+ +d l +
  MMETSP1061-20121228|7673_1 142 TNELIHNPEVNDALTN 157
                 5689999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 2063.43
//
Query:       MMETSP1061-20121228|7682_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 967.92
//
Query:       MMETSP1061-20121228|7670_1  [L=2102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-243  809.8  12.8   1.4e-122  408.0   0.5    4.4  5  TIGR01257 rim_protein: rim ABC transporter
   1.7e-123  409.6   0.1    1.2e-61  206.5   0.0    3.0  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.6e-84  281.3   0.0    4.9e-45  151.7   0.0    2.2  2  TIGR01288 nodI: nodulation ABC transporter NodI
    1.3e-82  274.6   0.0    1.3e-45  153.6   0.0    2.3  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    5.9e-81  270.0   0.0      1e-39  134.6   0.0    2.2  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.5e-64  215.6   0.0    4.7e-34  115.8   0.0    2.2  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    3.4e-61  204.6   0.0    3.8e-34  116.1   0.0    2.3  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.5e-60  201.9   0.0    1.9e-33  113.9   0.0    2.2  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    7.9e-56  187.4   0.0    7.2e-32  108.6   0.0    2.6  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    6.8e-53  177.6   0.0    4.3e-33  112.8   0.0    2.3  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    3.2e-51  171.8   0.0    8.1e-28   95.3   0.0    2.5  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.3e-50  169.6   0.0    2.1e-31  107.2   0.0    2.2  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    6.4e-49  164.3   0.0    3.5e-33  112.8   0.0    2.4  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    6.7e-49  165.0   0.3    1.2e-28   98.2   0.0    2.8  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    3.2e-48  162.0   0.0    6.1e-27   92.5   0.0    2.3  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.1e-47  158.3   0.0    1.9e-27   93.8   0.0    2.3  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      3e-46  155.8   0.0    2.7e-24   83.6   0.0    2.2  2  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    6.1e-46  154.6   0.0      2e-25   87.4   0.0    3.2  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.4e-45  152.8   0.0    4.3e-25   86.6   0.0    2.3  2  TIGR00960 3a0501s02: type II secretory pathway family protein
      1e-44  150.6   0.0    8.3e-23   78.8   0.0    2.3  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.7e-44  148.9   0.0    4.3e-25   86.3   0.0    2.2  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    2.7e-43  145.8   0.0    4.7e-25   86.3   0.0    2.2  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    4.4e-43  145.2   0.0    4.4e-24   83.1   0.0    2.3  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    5.4e-43  145.2   0.0    2.5e-21   73.7   0.0    2.4  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    8.9e-42  141.0   0.0    3.4e-24   82.9   0.0    2.4  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    9.4e-42  141.0   0.0    4.9e-27   92.8   0.0    2.2  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.4e-41  140.3   0.0    6.2e-24   82.6   0.0    2.3  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
      1e-40  137.8   0.2    8.6e-26   88.5   0.0    3.3  2  TIGR00955 3a01204: pigment precursor permease
    4.5e-40  135.6   0.0    1.1e-26   91.5   0.0    2.6  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      2e-39  133.2   0.0    5.5e-21   72.9   0.0    2.3  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    6.8e-37  125.0   0.0    2.7e-18   63.6   0.0    2.3  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    7.8e-37  125.1   0.0    9.1e-21   72.3   0.0    2.2  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.5e-36  123.7   0.0    2.3e-22   77.3   0.0    2.2  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    5.6e-34  115.3   0.0    6.4e-20   69.3   0.0    2.3  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    6.3e-34  115.4   0.0    8.3e-17   59.5   0.0    2.7  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    7.8e-33  111.8   0.0    2.2e-19   67.4   0.0    2.2  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    5.3e-32  108.7   0.1      3e-19   66.7   0.0    3.4  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.4e-31  107.7   0.0      3e-16   57.5   0.0    2.6  2  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    3.6e-31  106.1   0.0    4.1e-20   69.6   0.0    2.2  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.6e-30  103.3   0.0    3.9e-15   53.2   0.0    2.4  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    3.1e-29   99.8   0.0    8.1e-18   62.4   0.0    3.8  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    5.8e-29   99.0   0.0    3.3e-16   57.3   0.0    2.9  2  TIGR01978 sufC: FeS assembly ATPase SufC
    6.2e-28   95.5   1.3    1.3e-11   41.7   0.3    4.1  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.2e-27   94.6   0.0    6.5e-14   49.7   0.0    2.5  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.9e-27   93.1   0.0    3.4e-13   47.5   0.0    3.7  3  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    6.8e-27   91.8   0.0    6.3e-16   55.5   0.0    2.1  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    4.3e-26   89.5   0.0    5.6e-14   49.4   0.0    2.3  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    3.3e-25   86.3   0.0    3.8e-15   53.0   0.0    2.9  2  TIGR00958 3a01208: antigen peptide transporter 2
    5.8e-25   85.5   0.0    7.1e-14   48.8   0.0    2.3  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.3e-24   83.8   9.2    4.1e-15   52.3   0.0    3.6  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    8.4e-23   78.5   0.3    1.5e-13   47.9   0.1    3.0  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    5.4e-22   75.9   0.0    4.2e-13   46.6   0.0    2.2  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    8.7e-16   55.4   0.2    1.2e-09   35.1   0.0    2.6  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.1e-13   47.5   0.0    2.7e-06   22.9   0.0    2.2  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.5e-12   43.7   0.0    9.8e-06   21.1   0.0    2.2  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.7e-05   22.1   2.1      0.031   11.3   0.1    2.3  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
    2.3e-05   22.3   2.2     0.0014   16.5   0.1    2.3  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    2.4e-05   20.8   0.0      0.027   10.7   0.0    3.2  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
  ------ inclusion threshold ------
      0.034   11.7   0.7        1.9    6.0   0.0    2.6  2  TIGR00041 DTMP_kinase: thymidylate kinase
      0.055   10.1   2.2       0.13    8.8   0.1    2.1  2  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
       0.12    8.9   1.1       0.19    8.2   0.1    1.7  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
       0.26    6.7   0.2       0.51    5.8   0.0    1.5  2  TIGR02680 TIGR02680: TIGR02680 family protein
       0.51    5.7   1.2        1.7    4.0   0.0    2.2  3  TIGR00606 rad50: rad50


Domain annotation for each model (and alignments):
>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.2       1.6     1e+02      10      44 ..      10      44 ..       8      52 .. 0.90
   2 !  408.0   0.5  2.1e-124  1.4e-122     602    1278 ..     374    1032 ..     363    1063 .. 0.84
   3 ?    4.2   0.0     0.012      0.76    1350    1405 ..    1072    1127 ..    1044    1135 .. 0.88
   4 !  381.4   0.1  2.3e-116  1.5e-114    1677    2175 ..    1406    1928 ..    1354    1944 .. 0.89
   5 !   21.9   0.0   5.6e-08   3.7e-06    2162    2252 ..    1990    2092 ..    1979    2099 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 1.6
   TIGR01257 10 llwknwtlrkrqkirfvvelvwplslflvliwlrn 44
                l+ +n+  r+r+ i  + el+ p+ +++ l+w++ 
  MMETSP1061-20121228|7670_1 10 LMRRNFLYRRRNIIGSIFELILPILFVFFLVWIKH 44
                67899*******************99999***986 PP

  == domain 2    score: 408.0 bits;  conditional E-value: 2.1e-124
   TIGR01257  602 ryiwggfaylqdmveqgitrsqvqaeapvgiy...lqqmpyp..cfvddsfmiilnrcfpifmvlawiysvsmtvksivlekelrlketlknqgvsnaviwctwfldsfsimslsiflltifimhgrilhysdpfilflfllafsiatimqsfllstlfskaslaaacsgviyft.lylphilcfawqdrltadlkkavsllssvafgfgteylvrfeeqglglqwsnigksplegdefsfllsmkmmlldaalygllawyldqvfpgdygtplpwyfllqesywlggegcstreeralekteplteeledpeypegindsfferelpglvpgvcvknlvkifepsgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaqlkg....rsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkncfgtglyltlvrkmkniqsqrkgsegtcscaskgfstrcparvdeiteeqvldgdvnelldlvyhhvpeaklvecigqelifllpnknfkqrayaslfreleetladlglssfgisdtpleeiflkvte 1278
                  ry   g+  +q +v + i+     a a   +    +q +p+p   +v   f   +n   p+++ l  +y v+  v+ +vlekelr ke +k   v ++ i  +wf+  f    ++    +   +  ++   s p+ilflf l   +a i  ++ l+++f+ a+ a+ +s +++f  ++l  +  f         +   vsl    af fg + + r+e+ g+gl      ++    + ++f  +++ +l+d  ++g+ +wy ++v  g yg  lpwyf +  syw     +      a+     +    + p   e +  ++  re+     g+ v+nl k f    + avd l++ +y  qita+lghngagkttt+s+ltg+l ptsg   vggkdi + +d +r+ +g+c qh+ lf +ltv eh+ f+a++kg     s+eea+ +++a +ed  l  krn  +++lsgg++rklsvaiaf gd+  v+ldeptsg+dp+srr  w+++ +yr  r ii++th mdead+lgdriai+++g+l c g+ lflk+ +g g+ lt+ ++       +k s  ++    k +s       +  t e  +d  ++     v+  v  a+l+  +g e+ f lp        ++ +f +le+ +    + ++g+  t l+e+fl v+ 
  MMETSP1061-20121228|7670_1  374 RYAINGLLTIQRLVHDFIIADSGAAAAGYTVSeggVQFVPFPakSYVSSGFYEAINGFAPLLITLGLLYPVAAMVRYVVLEKELRQKELMKMMSVKESDIGWSWFVFFFIFHVFTAAGTAA--FSTQLWEESSPVILFLFWLFTFTAIIQFCMYLASIFTSATRATLVSLLVFFVgFFLTSVADFQSS---NMGVISMVSLHPVGAFAFGIQEIGRLEDSGVGLTAESATETD-SPNGYTFRNTLQNLLFDVLFWGIASWYSNRVSRGKYGRALPWYFPFTLSYWCPSSAA-----TAVRDDSEIKYPDDVPA--EPVSSAL--REQGAQGKGIEVRNLKKAFGE--KIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIREGIGICLQHDCLFPQLTVREHVAFFARIKGmyskMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMDEADILGDRIAIMAEGQLRCIGSSLFLKKTYGVGYQLTIEKN---PSLAKKASTDVVD-EKKRVS--EYDSKEGWTFESSIDEMIQ---RSVFDNVESANLLTNVGTEISFQLPLGA--SANFTPMFDQLEDFVNKGDIVTYGVGITTLDEVFLLVAR 1032
                  7777788888888887776655444444433222256666663369******************************************************99***9877665555554444..467899*************9999***********************9999872566666655443...34566789999999*******************876554433.34579999*******************************************765543.....34433333333333343..4455555..67777779***********74..78***************************************************************************************95444499***************************************************************************************************************************8643...3333444444333.333333..3345567777777776555...46999********************875..56799******************************9976 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.012
   TIGR01257 1350 lilqhvqallvkrfqhtirsrkdflaqivlpatfvflalmlsiiippfgeypaltl 1405
                  l  +hv al+ kr     r rk + +  +lp+ fv++ ++l   + p  +  ++tl
  MMETSP1061-20121228|7670_1 1072 LFSRHVSALFKKRAMNFKRDRKAWCCTTILPSVFVLIGFVLFAYVTPERNLDSITL 1127
                  6779************************************9999999888887776 PP

  == domain 4    score: 381.4 bits;  conditional E-value: 2.3e-116
   TIGR01257 1677 svdavva.icvifamsfvpasfvlyliqervnkakhlqfisgvspttywltnflwdimnyavsaglvvgifigfqkkaytssen..lpalvallllygwavipmmypasflfdvpstayvalscanlfiginssaitfvlelfenn.....rtllrlnallrkllivfphfclgrglidlalsqavtdvyaqfgeeysanpfqwdli..g.....knlvamavegvvyflltlliqrhfflsrwiaepa.ke.pivdedddvaeerqriisggnktdilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlrgvpaeeiekvanwsikslglsly.adrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiir.......egravvltshsmeecealctrlaimvkgafqclgtiqhlkskfgdgyivtmkikspk 2175
                  + da+ a + +i+++ f+  sf  +++qe+ +kakhlq ++gv p +ywl+ +lwdi ny + + + v ++  f+  + t++en  l a+++l++l+g av  + y +sf+f  ps + + l ++ ++i +  +  +fvl l+  n       ll   ++l  +l +fp f l rgl      q++t +  +   ++  +   w+++  g       l+am ++       ++++ r++f + w    a  e   +  dddv+ e  r++ gg + d++ l +l kvy g+   avd l +g+ pg+cfgllg+ngagkttt+ mlt +   +sgdat+ag s+  +  +  +++gycpqfda    ltgreh+ lya ++g+p   +++ a   +  +gls + +drla  ysgg kr+ls a a ig p +v+lde +tg+dp arr +w ++  ++        e  +v+lt+hsmeecealc r+ im  g ++clg+ q+lkskfg+gy v mkiks  
  MMETSP1061-20121228|7670_1 1406 ADDALSAwLLIILSFPFIGGSFATFVVQEKQSKAKHLQTVAGVKPIAYWLSTWLWDIANYQIPCWITVLLMFVFDVSSLTTTENgvLSAVLTLMVLFGPAVASFSYCTSFMFTSPSVCNLILIVSGFLISLGGTLTAFVLRLIGSNpvdkkENLLLAATILEWVLRIFPPFNLSRGLYSAINLQTITFLAGKPVSAWDPDACMWEIVflGwqsvvYLLLAMKIDEWSANPRAVMMFRKIFCCAWRLSSAaGEsQRTRIDDDVTAEEMRVLGGGANDDLIVLSQLGKVY-GNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKTRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFdSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSdknvppaERTSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKSKFGQGYQVEMKIKSVE 1928
                  5567666356889******************************************************************999997799******************************************************977633322568888889999****************9999****99999999999888888765223211114578999999999999999999******975544144145778******************************.67889***********************************************************************************************************97648***********************************************9998886222222245689*************************************************964 PP

  == domain 5    score: 21.9 bits;  conditional E-value: 5.6e-08
   TIGR01257 2162 gdgyivtmkikspkd...dllpdlnpve.......qffqgnfpgsvqrerhynllqfqvssss..larifqllvshkdsllieeysvtqttldqvfvnfakqq 2252
                  g gy+v    ksp     d l +++  e       +f++ ++p  + rer+ +  +++vss    +  if  + + kd l++ ey v+qt+l+qvf   a + 
  MMETSP1061-20121228|7670_1 1990 GAGYLVWKEAKSPTGidlDELAEFAASElrmrvlvDFINTEYPDNILRERQDTKTRYEVSSKGvlIGDIFATVEANKDRLMVAEYGVSQTSLEQVFNMHAAEA 2092
                  667777777777764212223333332222222227999*********************98722578****************************8877655 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.9   0.0   3.9e-61   2.5e-59       1     217 [.     699     936 ..     699    1030 .. 0.83
   2 !  206.5   0.0   1.8e-63   1.2e-61       1     233 [.    1691    1930 ..    1691    1976 .. 0.86
   3 ?   -0.1   0.0       1.5        95     252     297 ..    2038    2085 ..    1998    2089 .. 0.72

  Alignments for each domain:
  == domain 1    score: 198.9 bits;  conditional E-value: 3.9e-61
   TIGR01188   1 KkygefkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelygl....pkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKe..................rvgk 217
                 K +ge  Avd+++++++ g++ +lLG nGAGKttti+mLt++l P+sG a+v G D+ +  de+R+ ig+  q+  +  +Lt re++ +++++ g+    + +eae++++  +e v+l+e+++   +++sgGm+r+l++a+++  + e + LDEPt+G+Dp +rr  w++i++ ++ +  i+ltth ++ead l+dr+ai+ +G++  +++   LK+                  +   
  MMETSP1061-20121228|7670_1 699 KAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIREGIGICLQHDCLFPQLTVREHVAFFARIKGMyskmSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQ-NRCIILTTHFMDEADILGDRIAIMAEGQLRCIGSSLFLKKtygvgyqltieknpslakKAST 936
                 89******************************************************************************************9997222255678999999*************************************************************9876.6789***********************************96666665544444444432222 PP

  == domain 2    score: 206.5 bits;  conditional E-value: 1.8e-63
   TIGR01188    1 Kkyg.efkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkea.adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkeg.......vtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkke 233 
                  K+yg   +Avd+++l ++ g+ fglLG nGAGKttt+ mLt+  +P+sG a++aGy v +ep++ Rr +g  pq  +   +Lt+re++el++++ g+p +  +e a+  l  v l e+ +d+ +  ysgGm+rrl+la++ i +P+++fLDE  +G+Dp +rr+iw +++++++++       ++++ltth +ee ++l+ r++i+  G++   +++++LK++ g+      + +ik+++++
  MMETSP1061-20121228|7670_1 1691 KVYGnGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKTRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFdSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKnvppaerTSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKSKFGQGYQV--EMKIKSVETT 1930
                  78984568************************************************************************************************************973688999***********************************************9864233333368*************************************99987622..3334444332 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 1.5
   TIGR01188  252 evdsdkvklkveeadetvkeileavkrnk..ikissislkepsledvf 297 
                  e+++ k++ +v+++   + +i+++v++nk  + +++  +++ sle+vf
  MMETSP1061-20121228|7670_1 2038 ERQDTKTRYEVSSKGVLIGDIFATVEANKdrLMVAEYGVSQTSLEQVF 2085
                  34455667788888888999*9998776522678889999*******9 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.7   0.0   7.5e-47   4.9e-45       5     212 ..     692     902 ..     689     912 .. 0.95
   2 !  127.2   0.0   2.1e-39   1.3e-37       5     212 ..    1684    1900 ..    1681    1921 .. 0.89

  Alignments for each domain:
  == domain 1    score: 151.7 bits;  conditional E-value: 7.5e-47
   TIGR01288   5 idlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgr....yfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagr 212
                 i++ +++k++g+k+ v+dl + + +g+   llg ngagk+t   ++ g+ +p  g  tv g+++ + +   r  ig+  q d l +++tvre +  f r    y ++s  e e+ + + +e   l  k ++   +lsggmkr+l++a a+  d + ++ldept+g+dp +r + w+ +r    + + i+ltth+m+ea+ l dr+ ++ +g+
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIREGIGICLQHDCLFPQLTVREHVAFFARikgmYSKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQY-RQNRCIILTTHFMDEADILGDRIAIMAEGQ 902
                 8999******************************************************************************************99966333377888899**********9*********************************************************86.5789*********************99986 PP

  == domain 2    score: 127.2 bits;  conditional E-value: 2.1e-39
   TIGR01288    5 idlvgvsksygd.kvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfglstrei.eevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsll.......argktilltthlmeeaerlcdrlcvleagr 212 
                  i l+++ k yg+ k  v+ ls+ i  g+cfgllg ngagk+t   ++    +p+ g  t+ g  v ++   +r  +g  pqfd+  +++t re + ++    g+    + e++   l e    e  +d   a  sggmkrrl+la+a i +pq++ lde +tg+dp ar  iw  +  ++       a   +++ltth mee+e lc r+ ++  g 
  MMETSP1061-20121228|7670_1 1684 IVLSQLGKVYGNgKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKTRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVkEAAAAKLAEVGLSEFDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVsdknvppAERTSVILTTHSMEECEALCPRIGIMAGGN 1900
                  567888999*95499*****************************************************************************************98877255667788899999999*99*******************************************99988873333333445679*****************9998876 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   0.0     2e-47   1.3e-45       2     221 ..     692     914 ..     691     922 .. 0.94
   2 !  118.6   0.0   9.1e-37   5.9e-35       4     224 ..    1686    1915 ..    1683    1925 .. 0.92

  Alignments for each domain:
  == domain 1    score: 153.6 bits;  conditional E-value: 2e-47
   TIGR03864   2 leveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGl....sraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdevea.edrlvvlhkGkvlaqGaaaelaa 221
                 +ev++l++a+g++ a+dd+++++ +g+++aLLG nGaGk+t +s+lt++++ ++g  +v G+d+r+   e+ + +G+  q+  l  +l+v++ + ++a ++G+    s +eae+++++ ++++ l+e++++  r+L+GG +r++ +a a   + + +LlDe+t G+D+ sr+   + +r+    ++ +++ +th++de +   dr+ ++ +G+++  G++  l++
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIREGIGICLQHDCLFPQLTVREHVAFFARIKGMyskmSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYR--QNRCIILTTHFMDEADIlGDRIAIMAEGQLRCIGSSLFLKK 914
                 89****************************************************************************************************73322557999******************************************************************987..6679999********96389***********9998876665 PP

  == domain 2    score: 118.6 bits;  conditional E-value: 9.1e-37
   TIGR03864    4 veglsfaygk.rralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreegl......svLWathlvdeveae.drlvvlhkGkvlaqGaaaelaaead 224 
                  +++l + yg+ +ra+d++sl +++g++  LLG nGaGk+t + +lt  +  ++g+ ++aG+++ ++p++  +++G   q  +  ++l+ ++ ++ +a+++G++ + ++e  +++la++gl+e ++++ +   +GG +rr+ +a a + +P+++ lDe + G+D+ +r+++  +v ++v ++++      sv+ +th ++e ea   r+ ++  G+++  G+a++l+++++
  MMETSP1061-20121228|7670_1 1686 LSQLGKVYGNgKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKTRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFDSDRlAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNVppaertSVILTTHSMEECEALcPRIGIMAGGNLRCLGSAQQLKSKFG 1915
                  6788899997589****************************************************************************************************************9944569*******************************************999987654444449***********996268889**************988765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   0.0   4.7e-41   3.1e-39       3     236 ..     692     930 ..     690     981 .. 0.83
   2 !  134.6   0.0   1.6e-41     1e-39       3     251 ..    1684    1945 ..    1683    1968 .. 0.87

  Alignments for each domain:
  == domain 1    score: 133.1 bits;  conditional E-value: 4.7e-41
   TIGR03522   3 vevsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgr....klkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaek.kkvievefeeei 236
                 +ev++l k +g++ a+d++ ++   G+i+ +lG nGaGk+t++ +ltg l+++sG ++v g+d+     e+r+ iG   +h+ l+ +l vre+++f a + ++ ++    + + +v++ ie v l++++     +ls G +++  +a a+  d + ++ldePt+G+dP       +vi++  +++ +il+th m e + l dr+ i+ +G++    +   lk++     ++++e + ++
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIREGIGICLQHDCLFPQLTVREHVAFFARIKGMYSKmsyeEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMDEADILGDRIAIMAEGQLRCIGSSLFLKKTYGvGYQLTIEKNPSL 930
                 89**********************************************************************************************9998877654111156789***********99999999****************************************************************************98665555555444433555666555444 PP

  == domain 2    score: 134.6 bits;  conditional E-value: 1.6e-41
   TIGR03522    3 vevsdlsklygk.qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkkiga.lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdk........tvilsthimqevealcdrviiinkGkivadkkleelkaa.ek..kkvievefeeeidlqllekleevsevk 251 
                  +++s+l k+yg+ ++a+d++s+ + +G+  G+lG nGaGk+t+m +lt+ ++++sG +++ag++v +++ + r+++Gy P+ +  + +l  re++e+ a++ ++   ++k+  ++ +++vGl++ +  +++a  s G ++r  la a + +P+++ lde +tG+dP    ei  ++ ++  dk        +vil+th m e ealc r+ i+  G++    + ++lk++  +  +  ++++  e+ d+++l++l +++++ 
  MMETSP1061-20121228|7670_1 1684 IVLSQLGKVYGNgKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKTRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFDSDRLAAgYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKnvppaertSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKSKfGQgyQVEMKIKSVETTDQDYLDILAKLATIA 1945
                  56899******8467***********************************************************************************************************998888776538****************************************9999998884444333347***********************9998888888865313323555666666777777777777776554 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.8   0.0   7.2e-36   4.7e-34       2     203 ..     693     904 ..     692     909 .. 0.89
   2 !   97.4   0.0     3e-30     2e-28       4     205 ..    1687    1904 ..    1684    1913 .. 0.87

  Alignments for each domain:
  == domain 1    score: 115.8 bits;  conditional E-value: 7.2e-36
   TIGR03740   2 etknlskkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtr..kd.lkkiGsliesPalyenltarenlkvrtlllgl........pesrieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklk 203
                 e++nl+k+f+++ +v+++++++ + ++ +llG nGaGk+t++ +ltG+l +tsG  ++ g+++     +  + iG  +++  l+ +lt re +   + ++g+         e++++  ++ v l++++   ++++s Gmk++l +aia+  + + ++ldePt G+dP+  +   ++i+ ++++   +il++h + e + l d i i++eG+l+
  MMETSP1061-20121228|7670_1 693 EVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSgmDEiREGIGICLQHDCLFPQLTVREHVAFFARIKGMyskmsyeeAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQN-RCIILTTHFMDEADILGDRIAIMAEGQLR 904
                 799*********************************************************99854112314569*******************988888876332222223567888899999999999999***********************************************9876.689***********************997 PP

  == domain 2    score: 97.4 bits;  conditional E-value: 3e-30
   TIGR03740    4 knlskkfkk.qavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtr...kdlkkiGsliesPalyenltarenlkvrtlllglpesrieev....lkivdlente.kkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksf.......pekGitvilsshilsevelladhiGiiseGklkye 205 
                   +l k +++ + +v+++sl ++  + +gllG+nGaGk+t++ +lt  + ++sG+ +l g +++    k  + +G   +  a + nlt re +++ + ++g+p s ++e     l  v+l++ +  + a  +s Gmk+rl +a a + +P+++ lde + G+dP+  +e+  ++  +       p + ++vil++h + e e l+  iGi++ G+l+  
  MMETSP1061-20121228|7670_1 1687 SQLGKVYGNgKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANepeKTRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAaaakLAEVGLSEFDsDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMvsdknvpPAERTSVILTTHSMEECEALCPRIGIMAGGNLRCL 1904
                  5788999864789**********************************************98875222677899******************************9999854444889***98651677999***************************************99987762222222456799************************99865 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.0   5.8e-36   3.8e-34       1     215 [.     692     909 ..     692     917 .. 0.95
   2 !   86.3   0.0   7.4e-27   4.8e-25       1     221 [.    1684    1913 ..    1684    1925 .. 0.91

  Alignments for each domain:
  == domain 1    score: 116.1 bits;  conditional E-value: 5.8e-36
   TIGR00968   1 ilianvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtr.vkvrdreiGfvfqhyalfkhltvrdniafGleir....kkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsa 215
                 i++ n++k fG+  a+dd+++++ +G+++allG  G+Gk+t + +++G+  p+sG  ++ G+d+   ++  +  iG+ +qh  lf+ ltvr+ +af  +i+    k++ ++  akv+  +e v l++  +    +lsGG ++++++a a+  + + +lldep + +d   r+   + +r+  ++     ++ th  +ea  + dri+++ +G++  +gs+
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSgMDEIREGIGICLQHDCLFPQLTVREHVAFFARIKgmysKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNR--CIILTTHFMDEADILGDRIAIMAEGQLRCIGSS 909
                 789************************************************************96527777889**************************9999899999**************************************************************99999**998875..56899***********************99986 PP

  == domain 2    score: 86.3 bits;  conditional E-value: 7.4e-27
   TIGR00968    1 ilianvskrfGd.fqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr.dreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklg.drypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkv.....ttv.fvthdqeealevadrivvlekGkieqvgsaeevyde 221 
                  i+++++ k +G+  +a+d+++l ++ G+  +llG  G+Gk+t + +++    p sG  +l G  v++   + +r +G+  q  a f  lt r+ + +   i+ ++   +k+     l  v+l++++ dr  +  sGG ++r++la a   +pq+++lde  + +d   r+e+   + k+  + +v     t+v + th  ee   +  ri ++  G++  +gsa+++  +
  MMETSP1061-20121228|7670_1 1684 IVLSQLGKVYGNgKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKtRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFDsDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNVppaerTSViLTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKSK 1913
                  67889999**983479*********************************99**************9987652678**************************************************64899*********************************************9999876554444447762568****************************99766 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.9   0.0     3e-35   1.9e-33       2     214 ..     700     909 ..     699     974 .. 0.86
   2 !   85.6   0.0   1.1e-26   7.4e-25       5     225 ..    1696    1918 ..    1693    1964 .. 0.87

  Alignments for each domain:
  == domain 1    score: 113.9 bits;  conditional E-value: 3e-35
   TIGR01186   2 ktGlklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkide....qerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtP 214
                 + G k++v+d++++++ G+i  ++G  G+Gk+t++ +l  ++ Pt+G   + G+di     +e+    r  i++ +q+ +lfP  t+ + +++  +++++      +e + k   ++  v l e +++   +lsGGm++++ +a a++ + + +l+de+ s +dP+ r    + + +   + ++ i++ th +dea  lgdri+i+ +G++  +G+ 
  MMETSP1061-20121228|7670_1 700 AFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEI----REGIGICLQHDCLFPQLTVREHVAFFARIKGMYSkmsyEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQ--YRQNRCIILTTHFMDEADILGDRIAIMAEGQLRCIGSS 909
                 6799****************************************************76.45678....889***********************99987654111166666777899***************************************************998887765..56789**************************9999975 PP

  == domain 2    score: 85.6 bits;  conditional E-value: 1.1e-26
   TIGR01186    5 lklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkekalealklvdleey.edryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkkl.....qkt.ivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaney 225 
                  +k +v++++l i  G+ + ++G+ G+Gk+t++ +l     P++G   + G ++a+  + +     r+ +++  q  a f   t  + ++l   +++i+    ke a   l  v+l e+  dr     sGGm++r+ la a   +P+++++de  + +dP+ r e+   + k+ ++      ++t +++ th ++e   l+ ri i+  G++  +G+ +++     + y
  MMETSP1061-20121228|7670_1 1696 GKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPE-K----TRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFdSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKnvppaERTsVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKSKFGQGY 1918
                  6899************************************************998543.3....499************************************************99945899*****************************************99998887654312232466377889*********************99999888766666555 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         8   5.2e+02     225     266 ..     332     373 ..     328     377 .. 0.88
   2 !  108.6   0.0   1.1e-33   7.2e-32       6     224 ..     689     909 ..     683     919 .. 0.91
   3 !   75.8   0.0   1.1e-23   6.9e-22       9     235 ..    1684    1918 ..    1678    1926 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 8
   TIGR03258 225 ralydapadrfvaeylGaanllsaivlgiteapglvdvscgg 266
                  +l   p+d++  +y  + nl  +  +g t   g +  sc g
  MMETSP1061-20121228|7670_1 332 ATLTTPPTDKLFERYKQRDNLTCPDLVGGTPDIGTLKDSCTG 373
                 56778899******************9*99999999999987 PP

  == domain 2    score: 108.6 bits;  conditional E-value: 1.1e-33
   TIGR03258   6 tsGvvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlth.lppykrnlallvqnyalfphlkveenvafGlrar....kqskaliaervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGet 224
                   G+ + +l+ a+g ++ +ddl +++ +G++ allG+ G+Gktt + +++G++ +  G   v+++d+   +   + ++++ +q   lfp l+v e vaf  r +    k+s  + + +v  ++  v l++  + l  +lsGG+++++++a a+  + + +lldep s +d   r    + +++      +  ++  th  dea +l d+i +m eG+l   G +
  MMETSP1061-20121228|7670_1 689 GKGIEVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSgMDEIREGIGICLQHDCLFPQLTVREHVAFFARIKgmysKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYR---QNRCIILTTHFMDEADILGDRIAIMAEGQLRCIGSS 909
                 46999**************************************************************7626677889***********************9987434466777888899999*************************************************99988777776654...4789*************************9988875 PP

  == domain 3    score: 75.8 bits;  conditional E-value: 1.1e-23
   TIGR03258    9 vvleslrvayg.arvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppy.krnlallvqnyalfphlkveenvafGlrarkqskaliaervadalklvqlsda.aarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkal..hrelp...eltvlyvthdrdealvladkillmkeGslialGetralydapadrf 235 
                  +vl +l   yg ++  +d lsl i +G+ + llG  G+Gktt + +++    ++ G   +a+  ++  p   +r ++   q  a f  l+  e v +    +  + +l++e  a  l  v+ls++ + rl a  sGG+++r++la a + +p++++lde  + +d   r ++   + ++   +++p     +v+  th  +e  +l  +i++m  G+l  lG +++l  +  +++
  MMETSP1061-20121228|7670_1 1684 IVLSQLGKVYGnGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKtRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFdSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMvsDKNVPpaeRTSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKSKFGQGY 1918
                  67777766665378999****************************999999999999***********97626899***********************************************973679****************************************998777766522355663423568999*******************************88776666 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.0   6.5e-35   4.3e-33       3     225 ..     692     908 ..     690     916 .. 0.93
   2 !   62.4   0.0   1.6e-19     1e-17      11     231 ..    1693    1912 ..    1684    1915 .. 0.86

  Alignments for each domain:
  == domain 1    score: 112.8 bits;  conditional E-value: 6.5e-35
   TIGR03411   3 LevedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGs 225
                 +ev++++ +f+   a++dl++++ +g++ +++G nGaGktt + ++tG   p++G +++ gkd+++    +  r Gig   q+  +f +ltv+e +   + + k++++ +     +e+++++++ +e + L+ek+++ + +Ls G k  L +++ ++ +++ +llDeP++Gm    ++ t +++++ +++r +++  h m+  + l +++++++eG++ + Gs
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGM--DEIREGIGICLQHDCLFPQLTVREHVAFFA-RIKGMYSKM---SYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMDEADILGDRIAIMAEGQLRCIGS 908
                 6899************************************************************8644..44699*******************998755.456677666...56778899************************************************************************************************999886 PP

  == domain 2    score: 62.4 bits;  conditional E-value: 1.6e-19
   TIGR03411   11 sfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLee.kadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel........akersvvvvehDmefvrelaekvtvlheGkvlaeGsldevqa 231 
                    +g +a+++lsl + +g++  ++G nGaGktt + ++t    p++G++++ g ++++ +e++  ++G + +f   + f +lt +e +el ++  k++  +l++       e  ++ l+ +gL+e   d+ a+  s G k +L ++   + +p++++lDe  +G+    ++++  +++++        a+++sv++  h me  ++l  ++ +++ G++ + Gs +++++
  MMETSP1061-20121228|7670_1 1693 YGNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKTRRTVGYCPQFD--AHFTNLTGREHVELYASI-KGIPPSLVK-------EAAAAKLAEVGLSEfDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMvsdknvppAERTSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKS 1912
                  557899***************************************************99999888888888776..56***********97655.677777743.......33445577889987357899**********************************99999998888877723223333456799*****************************9999875 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.3   0.0   1.2e-29   8.1e-28       2     214 ..     693     907 ..     692     918 .. 0.87
   2 !   73.9   0.0   4.1e-23   2.6e-21       4     220 ..    1687    1911 ..    1684    1917 .. 0.85

  Alignments for each domain:
  == domain 1    score: 95.3 bits;  conditional E-value: 1.2e-29
   TIGR03410   2 evenlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk........ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaeg 214
                 ev+nl+ a+ge  ++ d+++++ +g+++a+lG+ng+Gktt +  l+g+l  +sG  ++ g+di++    + +++Gi+   q   +fp+ltv+e +   ++ +           e k++++i ++  +l+e ++  + +LsGG + +l++a a   + + +lLDePt G+ P   +   +vi++ +++    i+l  + +d a  l+dr++++ +G++   g
  MMETSP1061-20121228|7670_1 693 EVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS--GMDEIREGIGICLQHDCLFPQLTVREHVAFFARIKGMYskmsyeeaEAKVDASIEDV--ALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQN--RCIILTTHFMDEADILGDRIAIMAEGQLRCIG 907
                 799************************************************************86..678899*********************988666554432222222244444444444..7899999999************************************999999****99875..689***********************987655 PP

  == domain 2    score: 73.9 bits;  conditional E-value: 4.1e-23
   TIGR03410    4 enlevaYges.evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFP.v.lkem.lkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdl......aillveqvldfaleladrylvlerGevvaegekeeld 220 
                  ++l   Yg+  +++ ++sl ++ g++  +lG ng+Gktt +  l++  + +sG  +l+g ++ + +   + ++ ++y pq    f++lt +e +el ++ +    + ++e + +    v l+e+  +R +   sGG +  l++a a + +P+++ LDe + G+ P   +ei  +++++ ++k++      +++l  ++++ + +l  r+ ++  G++   g++++l+
  MMETSP1061-20121228|7670_1 1687 SQLGKVYGNGkRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPE--KTRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAeVgLSEFdSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNVppaertSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLK 1911
                  6778889886258999*********************************************998765..567899********************99998887766666555443331335666268999*****************************************99999988876543333339************************999998888876 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   3.2e-33   2.1e-31       5     218 ..     692     908 ..     688     914 .. 0.91
   2 !   60.2   0.0   6.4e-19   4.1e-17       7     222 ..    1686    1910 ..    1680    2004 .. 0.90

  Alignments for each domain:
  == domain 1    score: 107.2 bits;  conditional E-value: 3.2e-33
   TIGR03265   5 lsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrd.yGivfqsYaLfPnltvaeniayGLknk....klkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgt 218
                 +++++++k f++  a++d+++++  g + +lLG  G Gktt + +++G+  +++G  ++gg+di +   + r+  Gi  q   LfP+ltv+e +a+  + k    k++ ee++++v+  +e v l+++++     lsGG ++++++a a+    + +LLDeP s +D   r    + +++ +++     i+ th  +ea  l Dri++m +g++  +g+
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIREgIGICLQHDCLFPQLTVREHVAFFARIKgmysKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNR--CIILTTHFMDEADILGDRIAIMAEGQLRCIGS 908
                 799*************************************************************98888777549********************9655441111568899************************************************************99999999876655..55999*********************999986 PP

  == domain 2    score: 60.2 bits;  conditional E-value: 6.4e-19
   TIGR03265    7 ieeiekefea.ftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppq.krdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgse.ekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgv......ttimvthdqeealslaDrivvmnkgkieqvgtPeei 222 
                  ++++ k +++  +a++++sl +  g    lLG  G Gktt + +++    +++G  +l g  +++ p + +r  G   q  a f nlt +e ++   + k++  + v+e  +  L+ vgls+ + ++  +  sGG ++r++La a +  P++++LDe    +D   r ++   + k+    +v        i+ th  ee  +l+ ri +m  g++  +g+ +++
  MMETSP1061-20121228|7670_1 1686 LSQLGKVYGNgKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKtRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFDsDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNVppaertSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQL 1910
                  566777777426899********************************99*****************98725789***********************************************96527899******************************************999999877776444442468899**********************99999887 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.8   0.0   5.4e-35   3.5e-33       2     223 ..     692     905 ..     691     914 .. 0.91
   2 !   49.1   0.0   1.6e-15     1e-13       6     230 ..    1688    1910 ..    1683    1918 .. 0.85

  Alignments for each domain:
  == domain 1    score: 112.8 bits;  conditional E-value: 5.4e-35
   TIGR00972   2 levknlklfygekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayglrlkgikdkkelde...iveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelve 223
                 +ev+nlk  +gek a++d+++++++ ++tal+G  G+Gk+t +  l  +   +     +G  ++ gkdi +    + e+r+ +G+  q+   fp  ++ + va+  r+kg+ +k + +e    v++s++++al     +k ++ + +LsGG +++l++a a   + e +LlDePts +Dp + +   ++i++ +++  i++ th m+ a  + d++a+++eG+l  
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPT-----SGYATVGGKDIRSG---MDEIREGIGICLQHDCLFPqLTVREHVAFFARIKGMYSKMSYEEaeaKVDASIEDVALT----EKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMDEADILGDRIAIMAEGQLRC 905
                 689*******************************************9998877.....7888888****988...6789***************889**************99976554111789999999998....556666778***************************************************************************9965 PP

  == domain 2    score: 49.1 bits;  conditional E-value: 1.6e-15
   TIGR00972    6 nlklfyge.kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeL........kkkytivivthnmqqaarvsdktaffleGelveegeteqi 230 
                  +l  +yg+ k+a++ ++l i+  +  +l+G  G+Gk+t +  l            +G+ +l g ++ ++     + r++vG   q    f+  +  + v +   +kgi   + ++e++ ++L +++l +   d+l   a + sGG ++rl++a a   +P+++ lDe +  +Dp+a ++i  +++++        +++  +++ th+m+  + +  ++ +++ G+l   g+++q+
  MMETSP1061-20121228|7670_1 1688 QLGKVYGNgKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLT---AEF--PPSSGDATLAGYSVANE---PEKTRRTVGYCPQFDAHFTnLTGREHVELYASIKGIPP-SLVKEAAAAKLAEVGLSEFDSDRL---AAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMvsdknvppAERTSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQL 1910
                  56667776267***************************876653...333..4579*******999887...8899**************867889***********865.67899999*********8877777...7899*************************************9988887733222232356789999**********************999998887 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   1.8e-30   1.2e-28     314     517 ..     684     885 ..     655     897 .. 0.87
   2 ?   -1.5   0.4         3     2e+02      94     166 ..    1431    1504 ..    1426    1510 .. 0.77
   3 !   63.1   0.0   7.7e-20     5e-18     320     517 ..    1673    1883 ..    1648    1892 .. 0.77

  Alignments for each domain:
  == domain 1    score: 98.2 bits;  conditional E-value: 1.8e-30
   TIGR02857 314 ltaaassslelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenir.larkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrl 517
                  + a+ + +e++n++ a+ ++  a++++++++ +g+++al+G+ GaGK+t++++l g++ pt+G   v+g+++++   d+ r+ i+   Q+  lf++ tv+e ++ +ar +   ++++    +a++d  ++++   l  +    +++LSgG +++l++A a++ d++ +llDEPt+ +D+ +     + +r++ ++r ++l +H  
  MMETSP1061-20121228|7670_1 684 EQGAQGKGIEVRNLKKAFGEKI-AVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGM-DEIREGIGICLQHDCLFPQlTVREHVAfFARIKGMYSKMSYEEAEAKVDASIEDVA--LTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFM 885
                 23333349*********98888.**************************************************9988.66*************99766*******66777888888877777888888888886..78888999************************************************************65 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 3
   TIGR02857   94 vlqkkksgelatlllegvdalddYfarylpqlvlavivplvilaavltadwisalil.lltlPlipiFmiLiGs 166 
                  v+q+k+s +   + + gv+ +  +++ +l  +++  i  +++++ +++ d+ s  +    +l  +   m+L G 
  MMETSP1061-20121228|7670_1 1431 VVQEKQSKAKHLQTVAGVKPIAYWLSTWLWDIANYQIPCWITVLLMFVFDVSSLTTTeNGVLSAVLTLMVLFGP 1504
                  5666777777778899**********************************999766523344456666777665 PP

  == domain 3    score: 63.1 bits;  conditional E-value: 7.7e-20
   TIGR02857  320 s.........slelenvsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQ.kPllfegtvaenirlark..daseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegr........tvllvaHrl 517 
                  +          + l+++  +y +g++ a++++sl ++pg+  +l+G  GaGK+t++ +l    +p +G   + g  +a+  ++  r+++++ pQ  +++++ t +e ++l+ +  +   + vkea+ +a+l+e    l    e   ++ +ag SgG ++Rl+LA a + + +++ lDE    +D+ +  e+   + ++++ +        +v+l +H+ 
  MMETSP1061-20121228|7670_1 1673 RvlggganddLIVLSQLGKVYgNGKR-AVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEK-TRRTVGYCPQfDAHFTNLTGREHVELYASikGIPPSLVKEAA-AAKLAE--VGL---SEFDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKnvppaertSVILTTHSM 1883
                  34445555558999***999956666.************************************************99987765.999*******66889999******998651134445455554.344444..233...36678999***************************************9999999888654411111111566666665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.5   0.0   9.4e-29   6.1e-27       2     213 ..     692     901 ..     691     902 .. 0.90
   2 !   67.4   0.0   4.4e-21   2.8e-19       2     202 ..    1684    1888 ..    1683    1900 .. 0.90

  Alignments for each domain:
  == domain 1    score: 92.5 bits;  conditional E-value: 9.4e-29
   TIGR02673   2 ielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkke....eeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelekg 213
                 ie+++++k++  +  a++d+++++  g+++ l G+ GaGktt + +l+g++ p++G  +v g+d+++     +  +R  ig+  q   l+++ tv e va+  +++g+ +    ee + +v++ +e v l++k ++l+++lsgG + + ++a a   + e +l DePt  +D+   +   +++++  +    +i++th  + ++    r+ ++ +g
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFG-EKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS----GMDEIREGIGICLQHDCLFPQLTVREHVAFFARIKGMYSkmsyEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQ-NRCIILTTHFMDEADILGDRIAIMAEG 901
                 68899999995.55689***********************************************975....6788******************************987541112678899*****************************************************999999999999866.578999***988888888888777766 PP

  == domain 2    score: 67.4 bits;  conditional E-value: 4.4e-21
   TIGR02673    2 ielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgled.kakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnk.......rGttvivathdeelver 202 
                  i l+++ k y +g +a++++sl i +g+   l G  GaGktt + +l++   ps+G+ ++ag +va+  e+     Rr +g   q    +++ t  e v l  +++g + + +++   + l  vgl++   + l+   sgG + R ++a a + +P+++  De    +D+   ++i  +++++ +       + t+vi++th  e +e+
  MMETSP1061-20121228|7670_1 1684 IVLSQLGKVYGNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEK----TRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEfDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSdknvppaERTSVILTTHSMEECEA 1888
                  77999************************************************************998886....5*********88999************************************98457899*******************************************99988754122222246899999998876665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.8   0.0     3e-29   1.9e-27       7     188 ..     706     886 ..     701     888 .. 0.91
   2 !   62.3   0.0   1.3e-19   8.6e-18       1     186 [.    1693    1882 ..    1693    1885 .. 0.88

  Alignments for each domain:
  == domain 1    score: 93.8 bits;  conditional E-value: 3e-29
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlf.aadvdedvafgplnlGl....seaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvd 188
                 ++++l++++  g+ +allG+nGaGk+t +++l+G+l P+sG  +++G+++   r+g+ e+r+ +++ lq   d lf + +v e vaf  +  G+    s +e+e++v+ +++ v +++ ++ + + lsgG k+++++a a    ++ +lldePt+g+dp  ++   +++r+ r++ + ++++th +d
  MMETSP1061-20121228|7670_1 706 AVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDI---RSGMDEIREGIGICLQH--DCLFpQLTVREHVAFFARIKGMyskmSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQN-RCIILTTHFMD 886
                 7899*********************************************9...89*************95..78883569*******99988853222679*********************************************************************99865.78999999766 PP

  == domain 2    score: 62.3 bits;  conditional E-value: 1.3e-19
   TIGR01166    1 yedeaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgle.erpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklr.......eeGktvvisthd 186 
                  y ++ +++++l+l +  g+  +llG nGaGk+t + +l+  + P sG  +l G +++ +     ++r++v++  q  d  +   +  e v +     G+++  v++     la v++s+++ +r++  +sgG k+r+++a+a + +p++++lde ++g+dp  ++++  +++k++       +e ++v+++th 
  MMETSP1061-20121228|7670_1 1693 YGNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEP---EKTRRTVGYCPQ-FDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFDsDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVsdknvppAERTSVILTTHS 1882
                  789999************************************************998665...689******987.5777778888999***9999************************73689999****************************************99999872222222345567777775 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   4.2e-26   2.7e-24      19     219 ..     705     903 ..     692     911 .. 0.90
   2 !   69.8   0.0   6.6e-22   4.3e-20       2     225 ..    1684    1907 ..    1683    1928 .. 0.87

  Alignments for each domain:
  == domain 1    score: 83.6 bits;  conditional E-value: 4.2e-26
   TIGR02314  19 kaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelen....tpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgel 219
                  a+d++++ +  gqi  ++g  gagk+t i  +  +  ptsg   v gkd+     + + + r  ig+ +qh  l+   tv + va+   +++     + e+ + kv+  +  v l++k+++   nlsgg k+++++a a+  +   +l de ts +dp + +   +++++     +  i+l th md    + d++a++ +g+l
  MMETSP1061-20121228|7670_1 705 IAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIR----SGMDEIREGIGICLQHDCLFPQLTVREHVAFFARIKGmyskMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYR--QNRCIILTTHFMDEADILGDRIAIMAEGQL 903
                 489******************************9999*************96....56668899**********************9998876222257799******************************************************************99864..467899**********************98 PP

  == domain 2    score: 69.8 bits;  conditional E-value: 6.6e-22
   TIGR02314    2 iklekiskvfdqgdkkikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsd.kkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgl......tillithemdvvkricdevavidkgeliekgtv 225 
                  i l+++ kv+ +g++   a+d +sl +p gq fg++g  gagk+t +  +     p+sg+  + g  +++  ++   k+rr +g   q    ++  t  + v l   +++ p   +k+  +  la vgls+   d   +  sgg k+r+++a a   +p++++ de ++ +dp + + i  ++ ++    ++      +++l th m+    +c ++ ++ +g+l   g+ 
  MMETSP1061-20121228|7670_1 1684 IVLSQLGKVYGNGKR---AVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVAN--EP--EKTRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEfDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNVppaertSVILTTHSMEECEALCPRIGIMAGGNLRCLGSA 1907
                  678899999998887...667889************************9999999**********98864..44..478******9997777888888899*****************************94578999*****************************************9887665544443222222899**********************99766665 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.0   3.1e-27     2e-25       2     224 ..     692     903 ..     691     915 .. 0.90
   2 !   62.9   0.0   9.6e-20   6.2e-18       2     234 ..    1684    1911 ..    1683    1917 .. 0.85

  Alignments for each domain:
  == domain 1    score: 87.4 bits;  conditional E-value: 3.1e-27
   TIGR02315   2 levenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedke.kAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkagei 224
                 +ev+nl+k ++ +k a++++++++ +G+++a++G+ GaGk+t + ++ ++  ++sg  ++ gk+++    + + ++r+ ig+  q+  l  +ltv e v     ++   +k +++  s e+ e k  +++e v l+e+ ++ + +LsGG + ++++a a++ +++ +l DEP++ +Dp s +   +++++  +++   +i++ H +d a    dri  +++g++
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFG-EKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIR----SGMDEIREGIGICLQHDCLFPQLTVREHV-----AFFARIKGMYSKMSYEEAEaKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNR--CIILTTHFMDEADILGDRIAIMAEGQL 903
                 79*********.99***************************************************9....678899*******************9876.....44555666666666555541445679***********************************************************987765..6799******************99987 PP

  == domain 2    score: 62.9 bits;  conditional E-value: 9.6e-20
   TIGR02315    2 levenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakr.adqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgi......tvivnlHqvdlakkyadrivglkageivfdgasseld 234 
                  +++++l kvy+ngk+a++ ++l i +G+  +++G  GaGk+t + ++     +ssg+ +l g++v++    e +k+r+ +g+  q  +  ++lt  e v        +  +s+ g+ ++  ke A + L++vgl+e+ + r a   sGG + R+++a a + +p++++ DE  + +Dp + +++  ++ ++  +k++      +vi++ H+++  ++ + ri  ++ g++   g++++l+
  MMETSP1061-20121228|7670_1 1684 IVLSQLGKVYGNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVAN----EPEKTRRTVGYCPQFDAHFTNLTGREHV--------ELYASIKGIPPSLVKEAAAAKLAEVGLSEFDSDRlAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNVppaertSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLK 1911
                  7899*************************************************************95....556789999**99866666555544433........344555666677788999************999945679**************************************999988877766433333389****************9888888888877777776 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.0   6.6e-27   4.3e-25      14     216 .]     702     903 ..     692     903 .. 0.89
   2 !   64.0   0.0   5.4e-20   3.5e-18       2     199 ..    1684    1884 ..    1683    1901 .. 0.87

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 6.6e-27
   TIGR00960  14 aaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgr....eieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGkl 216
                 +++ a+d++++++  G+++ l Gh GaGk+t + +++g+  p++G   v g+d+       +  +r  iGi  q   l+ + tv + va+  ri G+ ++    e+e +v a++e v l++k+++l  +lsgG ++++++a a+  + + +l dePt+ +d+   r   +++++ + +   ++++th  +  +  + r+  + +G+l
  MMETSP1061-20121228|7670_1 702 GEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSG----MDEIREGIGICLQHDCLFPQLTVREHVAFFARIKGMYSKmsyeEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYR-QNRCIILTTHFMDEADILGDRIAIMAEGQL 903
                 67889*************************************************764....5679*******************************8764323288999*****************************************************99999999999875.567889999998888888888888887776 PP

  == domain 2    score: 64.0 bits;  conditional E-value: 5.4e-20
   TIGR00960    2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdka.kalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnr.......aGttvlvathden 199 
                  i ++q+ k y  +++ a+d +++ i+ G+   l G  GaGk+t + ++++   ps+G+  ++g+ +++    e  + rr++G   q    +++ t  + v l   i G+++  ++e + a l +vGl++ +  +l    sgG ++r+++a a + +P++++ de ++ +d+   r+i  ++ ++           t v+++th  +
  MMETSP1061-20121228|7670_1 1684 IVLSQLGKVYGNGKR-AVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVAN----EPEKTRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFDsDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSdknvppaERTSVILTTHSME 1884
                  78999******9999.*************************************************986....55568*********99999************************************9965167999****************************************99887663211111113466777777655 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.8   0.0   1.3e-24   8.3e-23       4     220 ..     694     908 ..     691     920 .. 0.89
   2 !   69.4   0.0   9.4e-22   6.1e-20      12     223 ..    1695    1909 ..    1684    1925 .. 0.94

  Alignments for each domain:
  == domain 1    score: 78.8 bits;  conditional E-value: 1.3e-24
   TIGR03873   4 lsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvval.GriPhrslfaadsdeda.evvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGp 220
                 + ++    g+++ vdd++++  +G++t+llG nG+Gk+t +++l+G+lap+ G  +++g+d+++     r   + +  q+    ++l+vr+ va+  ri  +++++  s e+a + vd+ + +v l++  +     lsGG +++  +a a++ + + +lldePt  +d  ++  + +++r+   ++  ++++ h ++ a  + d++ ++++G++   G+
  MMETSP1061-20121228|7670_1 694 VRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIRE-GIGICLQHDCLFPQLTVREHVAFfARI--KGMYSKMSYEEAeAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQY-RQNRCIILTTHFMDEADILGDRIAIMAEGQLRCIGS 908
                 566777889999**************************************************987777774.6888889999*********99962676..6777776665551568999999999999999999*********************************999999*******9.6777889999*******************9987775 PP

  == domain 2    score: 69.4 bits;  conditional E-value: 9.4e-22
   TIGR03873   12 ggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssl.adrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.......aegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppae 223 
                  +g+  vd + +  P+G+  gllG nG+Gk+t + +l+    p+ G+ +lag  +   + ++r r v    q     ++l+ r+ v l    + s+ +  ++  +e++++ la+v+ls++ +dr     sGG ++r  la a   +P++++lde    +d  a+ e+ ++v++++       ae++ v+++ h ++   ++c ++ +++gG +   G++++
  MMETSP1061-20121228|7670_1 1695 NGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKTR-RTVGYCPQFDAHFTNLTGREHVEL----YASIKGIPPSLVKEAAAAKLAEVGLSEFdSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVsdknvppAERTSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQ 1909
                  467789*************************************************9999998.7899******************99....99*******9******************55799999***********************************************************************************9988887765 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   6.6e-27   4.3e-25       1     185 [.     722     909 ..     722     915 .. 0.92
   2 !   60.5   0.0   4.7e-19     3e-17       1     190 [.    1715    1912 ..    1715    1943 .. 0.89

  Alignments for each domain:
  == domain 1    score: 86.3 bits;  conditional E-value: 6.6e-27
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekr.svnvvfqsyaLfPhmtveenvafgLkmr....kvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigep 185
                 lLG  G+Gktt + +l G+  + sG   ++g+d+ +   e r  +++  q   LfP +tv e vaf  +++    k+  +e +++v + +e v l+e  +    +lsGG ++++++a a     + +LlDep s +D   r    + +++ +++    ++l th  +ea  + dria++ +G++  ig++
  MMETSP1061-20121228|7670_1 722 LLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIReGIGICLQHDCLFPQLTVREHVAFFARIKgmysKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNR--CIILTTHFMDEADILGDRIAIMAEGQLRCIGSS 909
                 89********************************9988887736***********************99972222567899*********************************************************99999998888877765..5699***********************999876 PP

  == domain 2    score: 60.5 bits;  conditional E-value: 4.7e-19
   TIGR01187    1 lLGpsGsGkttlLrllaGleeldsGkilldgedvtevpae.krsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefa.krkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGi......tvvlvthDqeealtmsdriavlrkGkiaqigepeeiye 190 
                  lLG  G+Gktt + +l     ++sG   l g +v++ p + +r+v+   q  a f  +t  e v     ++++p + +ke   + L  v l+ef  +r     sGG ++r++la a + +P+i++lDe  + +D   r ++   + ++     +       v+l th  ee  ++  ri+++  G++   g+++++ +
  MMETSP1061-20121228|7670_1 1715 LLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKtRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFDsDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNVppaertSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKS 1912
                  79***********99999999****************9862689*************************************************961566788**********************************99999888887766554433333278999**********************99999988755 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.3   0.0   7.2e-27   4.7e-25       2     186 ..     693     884 ..     692     890 .. 0.92
   2 !   57.1   0.0     6e-18   3.9e-16      12     185 ..    1696    1881 ..    1689    1889 .. 0.85

  Alignments for each domain:
  == domain 1    score: 86.3 bits;  conditional E-value: 7.2e-27
   TIGR01189   2 eaeelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq........seqktveealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                 e+++l  + ge+  + +l+++l +G++ ++ G+nG+GKtt + +l+G+l p+sG  ++ +k++    de +e +     +d l ++L+++E + f+a++ +        +++ +v++++e+v L++  +++ ++Ls G kr+l++a  +       +LDEPt  +D  + +   ++++++ ++   ++l+th 
  MMETSP1061-20121228|7670_1 693 EVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIREGIGICLQHDCLFPQLTVREHVAFFARIKGmyskmsyeEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQN-RCIILTTHF 884
                 689999999*****************************************************************999999*******************998888886444459999***************************************************998888888877665.567788885 PP

  == domain 2    score: 57.1 bits;  conditional E-value: 6e-18
   TIGR01189   12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq....seqktveealekvgLsgl.edlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHl.......argGivllath 185 
                  +++ + +ls+ + +G++  + G nG+GKtt + +l+   +p+sG  +l++ ++a++ +++++++ y    d+  ++L+ +E ++ ya++ +      ++++ + l++vgLs++ +d+++a  s G krRl+la   + + ++  LDE  t +D  + + +  ++++ +       a+  +v+l+th
  MMETSP1061-20121228|7670_1 1696 GKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKTRRTVGYCPQFDAHFTNLTGREHVELYASIKGippsLVKEAAAAKLAEVGLSEFdSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVsdknvppAERTSVILTTH 1881
                  6778899***********************************************************************************955542233677789*******94589999**********************************99988877776655111112223455666666 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   0.0   6.7e-26   4.4e-24      17     210 ..     710     906 ..     699     909 .. 0.88
   2 !   59.7   0.0   9.5e-19   6.2e-17      12     210 ..    1698    1904 ..    1688    1907 .. 0.84

  Alignments for each domain:
  == domain 1    score: 83.1 bits;  conditional E-value: 6.7e-26
   TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtr.sapyerpvsmlfqennlfahltvrqnigl..Glkpgl.klnavqke.kvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210
                 +++++ +G++ a+lG+ GaGk+t +++++G+l p+sG  +v +kd  + +   +  + + +q + lf+ ltvr+ +++   +k    k++ ++ e kv++  ++v +++  + l  +lsGG ++++++a  +  +   +lldep s +dp  r+    ++++    +++ ++l th +++a    ++++++++G+++ +
  MMETSP1061-20121228|7670_1 710 LQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSgMDEIREGIGICLQHDCLFPQLTVREHVAFfaRIKGMYsKMSYEEAEaKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYR--QNRCIILTTHFMDEADILGDRIAIMAEGQLRCI 906
                 5678889**************************************86515667889********************983234433236766665438888899*********************************************************9985..56789************************9876 PP

  == domain 2    score: 59.7 bits;  conditional E-value: 9.5e-19
   TIGR01277   12 hlplefdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsap.yerpvsmlfqennlfahltvrqnigl.....GlkpglklnavqkekvedvarqvGiady.lerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkl......tlllvthslsdaaaiasqvvvvedGkikvl 210 
                  +    ++l +  G+   +lG  GaGk+t + +++    p sG+ ++ + ++ + +   +r v    q +  f+ lt r+ + l     G+ p+l      ke   +   +vG++++  +rl    sGG ++r++la   + +  i++lde  + +dp  r+e+  +v+k++++k++      +++l ths+++  a   ++ +++ G+++ l
  MMETSP1061-20121228|7670_1 1698 RAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEkTRRTVGYCPQFDAHFTNLTGREHVELyasikGIPPSL-----VKEAAAAKLAEVGLSEFdSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNVppaertSVILTTHSMEECEALCPRIGIMAGGNLRCL 1904
                  555567899999******************99999999*************9987626889*******************99844444555555.....445555556689***99569****************************************************9986433333269999*****************99998766 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.7   0.0   3.8e-23   2.5e-21     327     528 ..     684     883 ..     656     885 .. 0.89
   2 !   69.1   0.0     1e-21   6.5e-20     283     529 ..    1627    1882 ..    1615    1883 .. 0.83

  Alignments for each domain:
  == domain 1    score: 73.7 bits;  conditional E-value: 3.8e-23
   TIGR02868 327 aaasekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlF.dttvreNlr.larpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvth 528
                 +++++   +e+r+l+ ++ ++  ++++++++l  G+ +a++G  GaGK+t +++l+g+l+p +G  t+ g ++ s   +e+r+ + ++ q+  lF + tvre +  +ar ++    ++   ++++    +++    l  k ++  + lSGG++++l +A a   d + +lLDEPt ++D+  ++   + +++  ++r ++l th
  MMETSP1061-20121228|7670_1 684 EQGAQGKGIEVRNLKKAFGEK-IAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEIREGIGICLQHDCLFpQLTVREHVAfFARIKGMYSKMSYEEAEAKVDASIED--VALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTH 883
                 3334688999*****999876.789*********************************************99999.6999***************557*****9736999**99999999999999999999..67888888899**************************************99999999*********9999 PP

  == domain 2    score: 69.1 bits;  conditional E-value: 1e-21
   TIGR02868  283 afealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaas.....ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaq.daHlFdttvreNlrl.arpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt........vvlvthr 529 
                   ++  +a p A+  ++++   a R++ ++ +++ +   ++ +ae++ +     ++  ++l++l   y +++++++ +sl ++pG+   ++G  GaGK+t + +l+  ++p++G+ tl g+sva+   ++ rr+v +++q daH  + t re + l a  ++    l +  ++++La+   +     + +    +a  SGG+++Rl lA a + + +++ LDE + ++D+ +++e+  ++ +  +++         v+l th+
  MMETSP1061-20121228|7670_1 1627 KIDEWSANPRAVMMFRKIFCCAWRLSSAAGESQRTRIDDDVTAEEMRVlgggaNDDLIVLSQLGKVYGNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANE-PEKTRRTVGYCPQfDAHFTNLTGREHVELyASIKGIPPSLVKEAAAAKLAEVGLS-----EFDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNvppaertsVILTTHS 1882
                  35778889999999999999999**99999887776666666666666688877778999***************************************************************95.6669*********99************8856667767777777777777766444.....33445778899************************************98777776665555566666678888886 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   5.2e-26   3.4e-24     459     682 ..     684     906 ..     664     910 .. 0.85
   2 !   55.3   0.0   1.2e-17   7.8e-16     477     689 ..    1694    1911 ..    1673    1917 .. 0.80

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 5.2e-26
   TIGR03375 459 reklkGe.ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpqdvtLf.yGtlrdNialgap.aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe.lvdriivldkGrivad 682
                 ++  +G+ ie++n++ ++   ek a++++++++ +G+  a++G++G+GK+t   +l+g+++pt+G  ++ g dir   + ++r+ ig+  q   Lf + t+r+ +a+ a+ +   +++      a v++ +++ +    +      ++LSgG ++ +++a a+  d + +lLDEPts +D  s +   + ++++ +++ ++l+tH +   + l dri ++ +G++   
  MMETSP1061-20121228|7670_1 684 EQGAQGKgIEVRNLKKAF--GEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEIREGIGICLQHDCLFpQLTVREHVAFFARiKGMYSKMSYEEAEAKVDASIEDVALTEKRNT--LSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMDEADiLGDRIAIMAEGQLRCI 906
                 555555447888888888..46789*************************************************97.6889***************556*******999843444555555556667777776665555554..5678*********************************************************998877367*********98765 PP

  == domain 2    score: 55.3 bits;  conditional E-value: 1.2e-17
   TIGR03375  477 eeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlrrnigyvpq.dvtLfyGtlrdNialgap.aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladk.......T.lvlvtHrtslL.elvdriivldkGrivadGpkdevl 689 
                  ++ k a++++sl i pG+  +++G +G+GK+t + +l+  + p++G  +l g  + + +p++ rr++gy pq d++  + t r+ ++l a+ +    +l+   + a + ++++   + +d       ++ SgG ++ ++la a++ +p+i++LDE ++ +D  + +++   ++++++dk       T ++l+tH ++    l+ ri ++  G +   G+ +++ 
  MMETSP1061-20121228|7670_1 1694 GNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVAN-EPEKTRRTVGYCPQfDAHFTNLTGREHVELYASiKGIPPSLV---KEAAAAKLAEVGLSEFDSDRL--AAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKnvppaerTsVILTTHSMEECeALCPRIGIMAGGNLRCLGSAQQLK 1911
                  67889************************************************9986.899***********4555555688999988876322223333...333344555555555555443..4569**************************************9999999876533333333378999*98755269**********999999988865 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.8   0.0   7.6e-29   4.9e-27       2     199 ..     708     909 ..     707     918 .. 0.89
   2 !   45.9   0.0   1.7e-14   1.1e-12       2     197 ..    1701    1905 ..    1700    1917 .. 0.84

  Alignments for each domain:
  == domain 1    score: 92.8 bits;  conditional E-value: 7.6e-29
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrm.....vvfqnysllpwltvrenial..avdavlrdlskserreiveehielvglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakigei 199
                 +d+++++  g++ +l+gh g gk+t + +++g+  ptsg  ++ gk+i   g d +     + +q  +l+p ltvre +a+   ++ + +++s +e ++ v+  ie v+l+e  +    +lsggmk+++++a a++   + +lldep   +d ++r     ++++ ++++r+ +++ th +dea +l dr+ ++++g    ig  
  MMETSP1061-20121228|7670_1 708 DDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEIregigICLQHDCLFPQLTVREHVAFfaRIKGMYSKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTW-NVIRQYRQNRC-IILTTHFMDEADILGDRIAIMAEGQLRCIGSS 909
                 789999******************************************76.4444323444889***************97324788999*****************************************************************97655.56666666665.6789********************99999875 PP

  == domain 2    score: 45.9 bits;  conditional E-value: 1.7e-14
   TIGR01184    2 kdvdleikkgefislighsgcgkstllnliaglekptsgavilegkei.tepgpdrmvv.f..qnysllpwltvrenialavdavlrdlskserreiveehielvglreaa.dkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearv......tvlmvthdvdealllsdrvvmltngpaakig 197 
                  + ++l i  g+   l+g  g gk+t + +++    p+sg  +l g  + +ep   r  v +  q  + +  lt re + l      + ++ s  +e    +++ vgl+e   d+  +  sggmk+r+++a a    p++++lde    +d ++r e+   + k+v +++v      +v++ th ++e   l+ r+ +++ g    +g
  MMETSP1061-20121228|7670_1 1701 DSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVaNEPEKTRRTVgYcpQFDAHFTNLTGREHVELYA--SIKGIPPSLVKEAAAAKLAEVGLSEFDsDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNVppaertSVILTTHSMEECEALCPRIGIMAGGNLRCLG 1905
                  66889999*************************************999457887776652444778999********99864..4566666777777889999****99761566788****************************************99999998865433333278999*****************999766666 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.6   0.0   9.5e-26   6.2e-24       2     219 ..     692     903 ..     691     904 .. 0.90
   2 !   55.6   0.0   1.8e-17   1.1e-15       4     202 ..    1686    1883 ..    1683    1902 .. 0.85

  Alignments for each domain:
  == domain 1    score: 82.6 bits;  conditional E-value: 9.5e-26
   TIGR02982   2 ikirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelk...eklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildv.adrivkmedGkl 219
                 i++r+l+  +g+    k  + d+++++ +g+i  l G  G+Gktt +++++g+ +  +G  +v gk+++      + ++r  iG+ +q+  l+  lt+++ v + + +k   +k+s++ea+ak+++ +e v l e+ +  +++lsgG k+++++a a+    + vl dePt+ +d  s r   +++++    q+ +i+l th     d+  dri  m +G+l
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFGE----KIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS----GMDEIREGIGICLQHDCLFPQLTVREHVAFFARIKgmySKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYR--QNRCIILTTHFMDEADIlGDRIAIMAEGQL 903
                 567777777775....4567899********************************************965....6789************************998876522267999*********************************************************************9975..4556889999887777537*********98 PP

  == domain 2    score: 55.6 bits;  conditional E-value: 1.8e-17
   TIGR02982    4 irelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavglee.rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklar......eqgttillvthdn 202 
                  +++l   yg+g+   + + +++l i pg+   l G  G+Gktt + ++++     +G+ ++ g ++ + +e    + rr++Gy  q    ++ lt ++ v++ + +k     +  k+ a++ l +vgl e   d+ ++  sgG k+r+++a a + +P++v+ de  + +d  + re+  ++ k+         + t+++l th  
  MMETSP1061-20121228|7670_1 1686 LSQLGKVYGNGK---RAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPE----KTRRTVGYCPQFDAHFTNLTGREHVELYASIKGI-PPSLVKEAAAAKLAEVGLSEfDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSdknvppAERTSVILTTHSM 1883
                  677888888884...5677899***************************************9998876555....579**************************99865.888899999999******99678999**********************************************999994444444456788888865 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.5   0.0   1.3e-27   8.6e-26      36     250 ..     702     908 ..     677     969 .. 0.88
   2 !   57.6   0.0   2.9e-18   1.9e-16      44     260 ..    1703    1916 ..    1683    1982 .. 0.83

  Alignments for each domain:
  == domain 1    score: 88.5 bits;  conditional E-value: 1.3e-27
   TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekvea..kemraisayvqqddlfiptltvrehLmfsahlr.lkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGs 250
                 +ek  + +    ++sG++ A+lG  GaGKtT +++l+   +  + +    ++ G+ + +  +e+r+  +   q+d ++p+ltvreh+ f a+++ +  +++ +e +++v++ +e++ L++ ++t+         lSgG +++l++a     d   +++DEPTsG+D fs     +v+++  q++ ++++t     +++    d+i ++aeG+    Gs
  MMETSP1061-20121228|7670_1 702 GEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGY---ATVGGKDIRSgmDEIREGIGICLQHDCLFPQLTVREHVAFFARIKgMYSKMSYEEAEAKVDASIEDVALTEKRNTLSR------NLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMDEADIL--GDRIAIMAEGQLRCIGS 908
                 66777777778899*************************9998877...6899998864228899999*************************9999***************************976......6**********************************************9998866555555667775..59999999999866665 PP

  == domain 2    score: 57.6 bits;  conditional E-value: 2.9e-18
   TIGR00955   44 vsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekv..eakemraisayvqqddlfiptltvrehLmfsahlr.lkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaq.......kgktviltiHQPsselfelfdkiillaeGrvvylGspeeavkffse 260 
                   s  + +G+   +lG  GaGKtT + +l+   +     sgd +l G  v  e ++ r+  +y  q+d  +  lt reh+ + a ++ ++     +  +e+  + l e+gL++    r        g SgG ++Rl+la+ ++ +P+++f+DE  +G D +   ++  ++ k+ +       ++++vilt H    e   l  +i ++a G+   lGs++++ + f +
  MMETSP1061-20121228|7670_1 1703 LSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPS---SGDATLAGYSVanEPEKTRRTVGYCPQFDAHFTNLTGREHVELYASIKgIPP----SLVKEAAAAKLAEVGLSEFDSDRLA-----AGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSdknvppaERTSVILTTHS-MEECEALCPRIGIMAGGNLRCLGSAQQLKSKFGQ 1916
                  555677999*******************9988875...45789999887224578999**************************993444....43344455568999****9999998.....478*********************************99999988888865122222246778999995.5677788899999999999999999999877755 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   0.0   1.7e-28   1.1e-26      24     246 ..     691     906 ..     680     979 .. 0.87
   2 !   41.0   0.0   3.9e-13   2.5e-11      39     254 ..    1699    1912 ..    1665    1969 .. 0.82

  Alignments for each domain:
  == domain 1    score: 91.5 bits;  conditional E-value: 1.7e-28
   TIGR03415  24 GktreeildktGlvlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGv....akaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivql 246
                 G +  +++++ G+ ++v+d ++++  G+i+ l+G  G+Gk++ +  + g+ + + G  +v  +d            + ++r + + + +q+  l+P +tv+e vaf   ++G+    + +e   +v++ +e v l+e +++ + +lsGGm++++ +a af+ +++ +l+deP s +dP+ r  +  ++++ q + ++ i++ +h +dea  lG+riaim +G++  +
  MMETSP1061-20121228|7670_1 691 GIEVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSG--------MDEIR-EGIGICLQHDCLFPQLTVREHVAFFARIKGMyskmSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRR-FTWNVIR-QYRQNRCIILTTHFMDEADILGDRIAIMAEGQLRCI 906
                 55556788999**************************************999999*999987765433........33444.579***************************7322255788999******************************************************996.5566665.8889***************************98555 PP

  == domain 2    score: 41.0 bits;  conditional E-value: 3.9e-13
   TIGR03415   39 gvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrveeqlelvglaeWa.dkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkkl......kktivfvshdldealklGnriaimegGrivqlgtpeeivl 254 
                  +v+  sl +  G+   l+G+ G+Gk++ +  +    p s G+ ++        va+ +e+t r     +v    q  a +  +t +e v +   ++G++   +++ ++++l  vgl+e+  d+ +   sGGm++r+ la a   + +i+++de  + +dP+ r ++   + ++ +        +  +++ +h ++e   l  ri im gG +  lg+++++  
  MMETSP1061-20121228|7670_1 1699 AVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGY----SVANEPEKTRR-----TVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFDsDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKnvppaeRTSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKS 1912
                  477888999999999999999999999888888888888887776543....34555555544.....46666676788889999*********************************963788999*************************************99988877765431122214569999**********************99999988765 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.9   0.0   8.4e-23   5.5e-21       6     219 ..     696     903 ..     692     905 .. 0.85
   2 !   58.0   0.0     3e-18     2e-16       5     205 ..    1687    1886 ..    1683    1901 .. 0.87

  Alignments for each domain:
  == domain 1    score: 72.9 bits;  conditional E-value: 8.4e-23
   TIGR02211   6 nltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlli....skkskkeakerakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl.drvlelkdgkl 219
                 nl+k + e+      ++++++++++g+++a++G+ G+Gk+t + +l+g+  ptsG  ++ Gk++++     + ++r + +G   q   l++++t+ e va+ + i    sk+s +ea+ +  + +e v l ++ n  + +lsGG +++ ++a a+  + + vl dePt+ +d  + +  ++++++ ++  n ++++ th ++ a+ l dr   + +g+l
  MMETSP1061-20121228|7670_1 696 NLKKAFGEK----IAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSG----MDEIR-EGIGICLQHDCLFPQLTVREHVAFFARIkgmySKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQ--NRCIILTTHFMDEADILgDRIAIMAEGQL 903
                 555555443....346899*********************************************864....55666.579*******************987765222268899999999999*************************************************************9765..66889999988888776234445666666 PP

  == domain 2    score: 58.0 bits;  conditional E-value: 3e-18
   TIGR02211    5 enltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerakellekvglek.rinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekn......tallvvthdlela 205 
                  ++l+k+y +gk ++   + +sl i  g+  +++G  G+Gk+t + +l++   p+sG+ +l+G ++ +  ++       +++G+  qf   ++++t  e v + + i+    +  ke+a++ l +vgl++   ++ ++  sGG ++r ++a a + +P++v+ de  + +d  + ++i+ ++ ++ ++kn      t++++ th +e  
  MMETSP1061-20121228|7670_1 1687 SQLGKVYGNGKRAV---DSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEK----T-RRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEfDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNvppaerTSVILTTHSMEEC 1886
                  68999999999775...6789*****************************************987644333....3.3789**********************************************98356777899******************************************9998877643333338999999998755 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   4.1e-20   2.7e-18     297     511 ..     704     908 ..     681     915 .. 0.81
   2 !   58.8   0.0   1.2e-18   7.7e-17     298     519 ..    1698    1914 ..    1671    1924 .. 0.81

  Alignments for each domain:
  == domain 1    score: 63.6 bits;  conditional E-value: 4.1e-20
   TIGR03269 297 vkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaigle.lpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGd 511
                   avd+++++++ ++i  l+G  GaGktt+  +l G+l ptsG  +v  G + +   + g      +++ iG+  q+  l+p  tv e ++    ++ + ++++   a    + +  ++   +e  + l+ +ls G + ++++a  +  +   v+ldept  mdp +++   + i + r+  ++  ++ +h md    + dr+a+m +G++  iG+
  MMETSP1061-20121228|7670_1 704 KIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATV--GGKDI---RSG---MDEIREGIGICLQHDCLFPQLTVREHVAFFARIKgMYSKMSYEEAEA-KVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQ--NRCIILTTHFMDEADILGDRIAIMAEGQLRCIGS 908
                 459****************************************7765..55433...233...3346688****************999875444432333444433332.33344555555555678999*********************************************9998..7999************************998886 PP

  == domain 2    score: 58.8 bits;  conditional E-value: 1.2e-18
   TIGR03269  298 kavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilk..areel...eetfviv.shdmdfvlevcdraalmrdGkivkiGdpeeiveel 519 
                  +avd++sl +  ++ fGl+G+ GaGktt+  +l    +p+sG+ ++  G    +     +++  r+  y   +  +++  + r+ +e    +i   +p  l k  a   l  vG++e ++    d+l+   s G + r++la   i +p+iv lde +  +dp++++++   + k  + +++   e+t vi+ +h m+    +c r+++m  G++  +G+++++ +++
  MMETSP1061-20121228|7670_1 1698 RAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLA-GYSVAN----EPEKTRRTVGYCPQFDAHFTNLTGREHVELY-ASIK-GIPPSLVKEAAAAKLAEVGLSEFDS----DRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKmvSDKNVppaERTSVILtTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKSKF 1914
                  79*****************************************8864.654333....3344567778888888888888888888754.4443.5899*****************9887....6888999************************************997766551144443333778776537*********************9999998877665 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.0   1.4e-22   9.1e-21      15     271 ..     709     966 ..     695     981 .. 0.83
   2 !   50.5   0.0     6e-16   3.9e-14      20     223 ..    1707    1914 ..    1692    1946 .. 0.86

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 1.4e-22
   TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrY.....Gl.kraraeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdls.llekeea.gsvleatvaeldekygltalalgdgallvskkeeavga 271
                 d++++l + ++tal G+ G+Gkt+ i +++G++ p++g  ++ g+ + ++  +i     +  +g+  q+  LFp l+vre + +     G+ ++++ ee +++ ++ ie +++ +  + l+++LsGG k + +++ A   + e +l+DeP + +D  +++     +++ +++    i++  H +de   l dr+ ++ +G+++ +g+   + ++  +   l+ e++ +   +a  + +dek+ ++++  ++g+ + s+ +e ++ 
  MMETSP1061-20121228|7670_1 709 DLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEI-----REGIGICLQHDCLFPQLTVREHVAFfarikGMySKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNR--CIILTTHFMDEADILGDRIAIMAEGQLRCIGSSLFLKKTYGVGyQLTIEKNpSLAKKASTDVVDEKKRVSEYDSKEGWTFESSIDEMIQR 966
                 5667777779*************************************9999966.....678*******************987555555524556677789999999999999999999****************************************9999999998865..6799***************************99888888877743333333044445666777788888887777777766666666655 PP

  == domain 2    score: 50.5 bits;  conditional E-value: 6e-16
   TIGR02142   20 lpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLr.YGlkraraeerriseekviel..LgiehL.leRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiP......ilyvsHsldevarladrvvvledGrvkaagkleevlask 223 
                  +p  +  +l G  G+Gkt+ + +++    p++g  +l+g  +++  +       +R vgy  q    F+ l+ re ++ Y   +  + +  ++e++  +l  +g+++   +Rl++  sGG k R +++ A + +P+++ +De  + +D   ++ei   + ++ ++ ++P      +++  Hs++e + l  r+ ++  G ++  g+++++ ++ 
  MMETSP1061-20121228|7670_1 1707 IPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPE-----KTRRTVGYCPQFDAHFTNLTGREHVElYASIKGIPPS-LVKEAAAAKLaeVGLSEFdSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNVPpaertsVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKSKF 1914
                  55557789*******************************88777665.....589********999*********98647766666665.356555555522455555379******************************************************99998888889*********************************99875 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.0   3.6e-24   2.3e-22       2     195 ..     695     886 ..     694     897 .. 0.91
   2 !   44.2   0.0   4.8e-14   3.1e-12      10     195 ..    1696    1884 ..    1686    1893 .. 0.86

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 3.6e-24
   TIGR03608   2 kniskkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenle....lalklkkkskkekekkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpe 195
                 +n++k f++k  +++l++++ +G+++a++G+ G+GK+t + +l+ +  + sg  ++ gk+   +  ++ ++ +re +g   q   L  + tv+e +     +  +++k+s +e e k+   +e+v l++k ++   +lsgG k ++++a +   +se +l DEPt+ +D+ +r    +++++  ++++ ii+ tH + 
  MMETSP1061-20121228|7670_1 695 RNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKD---I--RSGMDEIREGIGICLQHDCLFPQLTVREHVAffarIKGMYSKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQY-RQNRCIILTTHFMD 886
                 799********************************************************9...3..4566778*********************986222256679999999*******************************************************************9987.579********665 PP

  == domain 2    score: 44.2 bits;  conditional E-value: 4.8e-14
   TIGR03608   10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeeg.......ktiiivtHdpe 195 
                   k+ +++lsl i  G++  ++G  G+GK+t + +l+    ++sg+ +l g +      +++ + +r ++gy  q  a   n t +e +el   +k +  +  +++    l +vgl e + ++     sgG k R++la + + ++++++ DE  + +D+  r e+  +++++ ++        + +i+ tH++e
  MMETSP1061-20121228|7670_1 1696 GKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYS-----VANEPEKTRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLsEFDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKnvppaerTSVILTTHSME 1884
                  47899*********************************************99.....33455567899***********************************************66778888899***************************************99999887643122222145888889876 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   9.9e-22   6.4e-20       2     204 ..     707     903 ..     706     908 .. 0.90
   2 !   43.7   0.0   6.7e-14   4.4e-12       2     204 ..    1700    1901 ..    1699    1916 .. 0.85

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 9.9e-22
   TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal.alrgreialilqnPrsafnPlltikeqlletlkale...kls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                 v+d++++l  g+++al+G+ G+Gk++t + + g+l+     tsG  ++ gk++ +    + + i++ lq   +++ P lt++e++    ++++   k+s ++a++++ +++e+v+L+e ++ l+    +lsGGm  ++ +a+a + ++  ++ DePt+ +D  ++    + +++ r++r   i+l th +     l d +a+m +G++
  MMETSP1061-20121228|7670_1 707 VDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLA----PTSGYATVGGKDIRSGmDEIREGIGICLQH--DCLFPQLTVREHVAFFARIKGmysKMSyEEAEAKVDASIEDVALTEKRNTLSR---NLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNR--CIILTTHFMDEADILGDRIAIMAEGQL 903
                 99****************************99*999....689**********87645666789999996..9***********9876665541115556899999***********99999976...8************************************99999999988765..89***********************96 PP

  == domain 2    score: 43.7 bits;  conditional E-value: 6.7e-14
   TIGR02770    2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal.alrgreialilqnPrsafnPlltikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrg......lgillithDlgvvaeladevavmekGki 204 
                  v+ ++l +  g++ +l+G  G+Gk++t    +g+l +e   +sG+ +l+g ++a+  +   r++++  q     f+  lt +e++     +++ + +  ke +++ l +vgL+e +   +  +   sGGm  R+ +a a + ++ +++ De +t +D v++ e+  ++++++++++      ++++l th +     l   + +m  G++
  MMETSP1061-20121228|7670_1 1700 VDSLSLGIPPGQCFGLLGINGAGKTTT----MGMLTAEFPPSSGDATLAGYSVANEpEKTRRTVGYCPQFD-AHFTN-LTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFDS--DRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNvppaerTSVILTTHSMEECEALCPRIGIMAGGNL 1901
                  899*********************976....899999****************998445556677776643.44555.5667888777777888889999999**********7765..7777888*********************************************9986533333389*********99999999999999876 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   1.3e-18   8.3e-17       3     186 ..     714     898 ..     712     915 .. 0.83
   2 !   52.7   0.0   1.5e-16     1e-14       4     200 ..    1708    1911 ..    1705    1923 .. 0.76

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 1.3e-18
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrrei....Gyvpqrhefawdfp.idveqtvlsGragliGllrrpkkadfaa.vadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvll 186
                 + +G++ +llG nGaGktt +  + g+++++ G   v+gk  r+g+ ei    G +  +h+    fp + v++ v +  a+  G++ + + ++  a v++++e v lte ++    +lsGG ++++ va a+  + + +lldep +G+d  s+    +++++  + +++i++tth + ea    dr+ ++
  MMETSP1061-20121228|7670_1 714 LYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIregiG-ICLQHDCL--FPqLTVREHV-AFFARIKGMYSKMSYEEAEAkVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQ-NRCIILTTHFMDEADILGDRIAIM 898
                 56899**************************************99887632114.44456654..5524454443.4456667888776666655428889************************************************9999999999998865.678999********9999999876 PP

  == domain 2    score: 52.7 bits;  conditional E-value: 1.5e-16
   TIGR03771    4 dkGellgllGpnGaGkttllrailglikvakGsvkvagks....srkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervkltel.adrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeela.......gegtailmtthdlaeavatcdrvvllng.rvvadgapdqlq 200 
                   +G+  gllG nGaGktt +  + +  +++ G   +ag s    ++k rr +Gy pq      +     e++ l    + i     + +    a a+ l +v l+e+ +dr     sGG ++r+ +a a   +p++++lde  tG+d  ++ ++ ++++++        +e t++++tth + e  a c r+ ++ g ++   g+ +ql+
  MMETSP1061-20121228|7670_1 1708 PPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSvanePEKTRRTVGYCPQFDAHFTN-LTGREHVELYASIKGI---PPSLV--KEAAAAKLAEVGLSEFdSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVsdknvppAERTSVILTTHSMEECEALCPRIGIMAGgNLRCLGSAQQLK 1911
                  57999*****************************99986522226789********95432222.2333444444333333...23333..346667799******945899999********************************999999999988876122222235679*****************9777541555566666665 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.0   3.4e-21   2.2e-19     346     557 ..     700     908 ..     660     922 .. 0.84
   2 !   42.0   0.0   1.7e-13   1.1e-11     353     526 ..    1697    1866 ..    1679    1918 .. 0.77

  Alignments for each domain:
  == domain 1    score: 67.4 bits;  conditional E-value: 3.4e-21
   TIGR02204 346 ayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaa.svleniry.GrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatv.lkadrivvldkGriveqGt 557
                 a+    ++ a+d+l++++ +G+  al G  GaGk+t +++l     P+sG   ++G d+r+   +e+re + +  q+  lf +  v+e +++  r++    ++     +a+ d  i+++      +    + +LsGG k+++++a a   d+  +LLde ts +d  s +   + + +  ++r  ++  h +    +  dri+++ +G++  +G+
  MMETSP1061-20121228|7670_1 700 AFG---EKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEIREGIGICLQHDCLFPQlTVREHVAFfARIKGMYSKMSYEEAEAKVDASIEDVALTE--KRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMDEAdILGDRIAIMAEGQLRCIGS 908
                 444...5669*************************************************98.5789***************753799999853899998888888888888888888765433..33344678*********************************************************996542568**********988876 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 1.7e-13
   TIGR02204  353 qkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaa.svlenir.yGrpdasd.eeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgr 526 
                  + a+d l+l + pG+   l G  GaGk+t + +l   + P+sG   l G  +++ +pe+ r+++   pq  a f++   +e +  y  ++      v++aa a  a+  +s+++    +     +   sGG k+r+++a a + + +i++Lde  + +d  + + +   + ++++++
  MMETSP1061-20121228|7670_1 1697 KRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVAN-EPEKTRRTVGYCPQFDAHFTNlTGREHVElYASIKGIPpSLVKEAAAAKLAEVGLSEFD----SD--RLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDK 1866
                  5799***********************************************975.9*************999998624566665366666654144555555555555555554....43..346779*******************************988888877777766553 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   4.6e-21     3e-19       3     218 ..     693     902 ..     691     909 .. 0.92
   2 !   19.3   0.0     1e-06   6.6e-05       6      55 ..    1688    1738 ..    1683    1759 .. 0.83
   3 !   18.6   0.0   1.7e-06   0.00011     384     482 ..    1797    1902 ..    1752    1911 .. 0.80

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 4.6e-21
   TIGR02633   3 emkgivkkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGq 218
                 e++++ k fg+  a+d+++++l +G+i +l G nGaGk+t + +l+g+      +G  +  g+++++    d  r+Gi i  q   l ++l+v e + +   i    ++m+y++   ++++ ++++ l ++ +t+   +l +G ++ + +a a+      ++ldep++ +     +   ++ir+ +++    +  +h ++e + + d+i+++ +Gq
  MMETSP1061-20121228|7670_1 693 EVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAP--TSGYATVGGKDIRSG--MDEIREGIGICLQHDCLFPQLTVREHVAFFARIKGMYSKMSYEEAEAKVDASIEDVALTEKRNTL-SRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNR-CIILTTHFMDEADILGDRIAIMAEGQ 902
                 7899*******************************************8643..457778899999754..5777899********************99999999999**************************9.899********************************************998764.456789****************9998 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1e-06
   TIGR02633    6 givkkfgg.vkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGt 55  
                  ++ k +g+  +a+d+++l + +G++ +l G nGaGk+t m +l++ +p  +
  MMETSP1061-20121228|7670_1 1688 QLGKVYGNgKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSS 1738
                  566777651579*********************************999765 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 1.7e-06
   TIGR02633  384 eeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqla.......qeGvaiivvsselaevlGlsdrvlvigeGklk 482 
                   +++ ++ +  ++ d   a+ sGG +++  la   + np+++ lde + Gvd  a+ ei+ ++++++       +e  ++i+ +  + e   l+ r+ ++  G+l+
  MMETSP1061-20121228|7670_1 1797 AAKLAEVGLSEFDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVsdknvppAERTSVILTTHSMEECEALCPRIGIMAGGNLR 1902
                  555566666666777777899******************************************9887222222234568888888888888899999888888876 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   4.6e-18     3e-16      17     229 ..     697     903 ..     689     909 .. 0.91
   2 !   47.0   0.0   7.4e-15   4.8e-13      26     229 ..    1699    1901 ..    1688    1924 .. 0.84

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 4.6e-18
   TIGR02769  17 llgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlr...hltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                 l ++ + k  +d+++++l +G+  allG+ GaGk+t   +l G+  P++G  +  G+d+    r+++  +r  + + +q    ++ p+ +vre ++   r    + +++  e +a++ + +e v l + + + l r+lsGG  +++++a a+  + + ++lde  s +d   +    + +++ +q+    +++ th +  ++ + +r++++ eGq+
  MMETSP1061-20121228|7670_1 697 LKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDI----RSGMDEIREGIGICLQH--DCLFPQLTVREHVAFFARikgMYSKMSYEEAEAKVDASIEDVALTE-KRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRC--IILTTHFMDEADILGDRIAIMAEGQL 903
                 555666778899**********************************************9....689999********995..56899****9999865553336899*******************75.66899**************************************************9975..6899********************97 PP

  == domain 2    score: 47.0 bits;  conditional E-value: 7.4e-15
   TIGR02769   26 vldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkq......efGlaylfithdlrlvqkfaqrvlvldeGqi 229 
                   +d +sl +  G++ +llG  GaGk+t   +l     P++G+ + +G  +a+  +k+r+++    q  f    + +  r+ v+         ++ +  s  k+ +a+ l +v+l++ + d+l +  sGG  +r+++a a   +P+++ lde+ + +d v + +i  ++ k+        +  +++++ th ++  + ++ r+ ++ +G++
  MMETSP1061-20121228|7670_1 1699 AVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKTRRTVGYCPQ--FDAHFTNLTGREHVE-----LYASIKGIPPSLVKEAAAAKLAEVGLSEFDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSdknvppAERTSVILTTHSMEECEALCPRIGIMAGGNL 1901
                  56899***************************9999**************9866666555554444..555566666666664.....44567788889999999999*******************************************************999998876511111145689**********************9986 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   6.2e-22   4.1e-20     322     546 ..     681     903 ..     671     922 .. 0.86
   2 !   34.1   0.0   3.6e-11   2.3e-09     343     518 ..    1694    1864 ..    1664    1918 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 6.2e-22
   TIGR02203 322 tralervrGk.vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFdd.tiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek.aDrivvlddGki 546
                     + ++Gk +e+rn++  +++  + a+d++++++ +G+++al G  G+Gk+t +++l+  + p+sG   + g+d++   ++++R+ + +  q+ +LF + t+ e va+ ++ +    ++    a+a +   ++++   l  +  + + +LsGG + +l++a a+  d+  ++LDe ts +D  s R   + + +  ++R  ++  h +   +   Dri ++ +G++
  MMETSP1061-20121228|7670_1 681 ALREQGAQGKgIEVRNLKKAFGE--KIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEIREGIGICLQHDCLFPQlTVREHVAFFARIKGMYSKMSYEEAEAKVDASIEDVA--LTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMDEADIlGDRIAIMAEGQL 903
                 555666788669********986..5799************************************************97.69*****************7659******98886655556655555666666666554..55666677889*********************************************************9988774379********97 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 3.6e-11
   TIGR02203  343 gddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLRrqvalvsq.dvvLFddtiaenva.YgeleevdeaeveealaaaylkdlvdklpeGl.dtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmk 518 
                  g+++ a+ds+sl + +G+   l G  G+Gk+t + +l+  + p+sG+  l g  +a+   ++ Rr v +  q d +  + t  e v  Y++ + ++   v+ea+a a l ++      Gl +++  + ++  sGG + Rl++a a + +  i+ LDe  + +D  + R++   + ++  
  MMETSP1061-20121228|7670_1 1694 GNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANE-PEKTRRTVGYCPQfDAHFTNLTGREHVElYASIKGIPPSLVKEAAA-AKLAEV------GLsEFDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVS 1864
                  568899*************************************************985.58889******9956777788999999769999*****99999875.555554......44123445678899*******************************9999999877777654 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0     6e-17   3.9e-15     325     536 ..     698     908 ..     688     915 .. 0.82
   2 !   47.5   0.0   3.1e-15     2e-13     331     543 ..    1697    1913 ..    1679    1914 .. 0.77

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 6e-17
   TIGR01842 325 vppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPqdveLfeG.tvaeniaRfee..nadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGe 536
                  ++ ++k  + +++++l +G++ a++G  g+Gk++   +l+G+  p+sG   + g d++    +++ + iG   q   Lf+  tv e +a f +   + ++  +e a+ a+v   i  +      +  +   +LsgG + ++++a a+ gd   v+LDeP + +D        + + + +++++++++     ++  l d+i+++ +G+l+  G+
  MMETSP1061-20121228|7670_1 698 KKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEIREGIGICLQHDCLFPQlTVREHVAFFARikGMYSKMSYEEAE-AKVDASIEDVALT--EKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMDEADILGDRIAIMAEGQLRCIGS 908
                 4566788999************************************************86.67889999**999999999654*****98776511244555555554.4555555444332..233445789***********************************************9999887766666777778***********99997 PP

  == domain 2    score: 47.5 bits;  conditional E-value: 3.1e-15
   TIGR01842  331 kktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGksiGYlPq.dveLfeGtvaeniaRfeenad..aekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqal...akalkelk....arkitvvvithrpslle.lvdkilvlkdGalkafGereevlkk 543 
                  k+ +  +s+ + +G+  +++G  g+Gk++ + +l+  ++p+sG   l g+++ + + e+  +++GY Pq d +  + t  e +  +   ++  + ++++ a +a+  e+ l+    +d++  ++G   sgG + R++La a  g+P++v LDe  + +D      +   ++ +++ k    a++++v++ th ++  e l  +i ++  G+l+ +G+++++++k
  MMETSP1061-20121228|7670_1 1697 KRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVAN-EPEKTRRTVGYCPQfDAHFTNLTGREHVELYAS-IKgiPPSLVKEAAAAKLAEVGLS---EFDSDRLAAG--YSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIwgmVSKMVSDKnvppAERTSVILTTHSMEECEaLCPRIGIMAGGNLRCLGSAQQLKSK 1913
                  578999**********************************************87.789999********6555555555565544433.22124455555556777776553...5788766555..79******************************88766541114444444433335788999999*9987651679****************999877 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.2e-19   8.1e-18       1     226 [.     692     904 ..     692     911 .. 0.88
   2 !   30.5   0.0   6.4e-10   4.2e-08       5     233 ..    1688    1909 ..    1684    1919 .. 0.78

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 1.2e-19
   TIGR03005   1 vrisdvtkrfgeltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGv....araeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiv 226
                 ++++++ k fge   +d+l++++ +G+  al+G  G+Gk+t + +l  + +   G   v g+ +     r           + ++re iG+ +q+  lfp  tv + v+    ++kG+    +  eae++    ++ v l++k+++l  +lsGG k+++++a a+      +l+de+ts +dp       nv+r+  ++    ++l th m  a  + dr+  +  G++ 
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDI-----R---------SGMDEIREGIGICLQHDCLFPQLTVREHVAFF-ARIKGMyskmSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQN--RCIILTTHFMDEADILGDRIAIMAEGQLR 904
                 688999****************************************999999999999955433.....2.........23578********************9999753.4666652111567899999999************************************************************98765..57899*****************9999875 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 6.4e-10
   TIGR03005    5 dvtkrfge.ltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmvGlad.kadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdl......tmllvthemgfarefadrvlffdkGkiveeGkpde 233 
                  +++k +g+  + +d l+l + +G+   l+G  G+Gk+t + +l +  + + G   + g ++   +              +k r  +G   q    f   t  + v e    +kG++++  ++ a   l  vGl++   d l a  sGG k+r+++a a   +p+++++de ++ +dp    e+  ++ ++ s++++      +++l th m   + ++ r+  +  G++   G  ++
  MMETSP1061-20121228|7670_1 1688 QLGKVYGNgKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEP--------------EKTRRTVGYCPQFDAHFTNLTGREHV-ELYASIKGIPPSLVKEAAAAKLAEVGLSEfDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDKNVppaertSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQ 1909
                  55666665245677777778888888888888888888777777666777777777444333333..............46788888888877777777776665.556789*********************9845799**************************************************99987644444368999****99999999998888887766666555 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.3   0.0   5.1e-18   3.3e-16       2     240 ..     693     920 ..     692     923 .. 0.84
   2 !   37.6   0.0     5e-12   3.3e-10      11     235 ..    1695    1913 ..    1688    1920 .. 0.81

  Alignments for each domain:
  == domain 1    score: 57.3 bits;  conditional E-value: 5.1e-18
   TIGR01978   2 kikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvelakelekkgy 240
                 ++++l+    +k  +++l++++ +G++ a++G nG+Gk t  ++l+g      tsG  ++ g+d+ +    +  r+G+ + +q+    p ++++e +     a+ k    ++++  e e ++++++e ++l+e+  + +l    sGG k++  +      + + ++LDe  sG+D  + +   +++ ++r+ ++ +++ th+    + i  d + ++++G++   G++ ++k+    gy
  MMETSP1061-20121228|7670_1 693 EVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGML--APTSGYATVGGKDIRSG--MDEIREGIGICLQHDCLFPQLTVREHVAF--FARIK-GMYSKMSYEEAEAKVDASIEDVALTEK--RNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQ-NRCIILTTHFMDEAD-ILGDRIAIMAEGQLRCIGSSLFLKKTYGVGY 920
                 6899999999999*********************************975..579***********863..4556899999************9998754..44442.244557777777788888887777764..34567778*********************************************97.578999999998766.668**********998888877777666666 PP

  == domain 2    score: 37.6 bits;  conditional E-value: 5e-12
   TIGR01978   11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.......ekalliithyerllelikPdvvhvlldGrivksGdvelakel 235 
                  + k+ +++l+l + +G+   ++G nG+Gk t + +l+   +   +sG+ +l+g ++++    e++r+ +    q     + ++ +e +   +  +    g   +  +  ++   +kl+ + l+e + +  l  G+sGG k+r  +   ++ +P+++ LDe   G+D  a + +  +v+k+ ++       ++++++ th  +  e++ P  + +++ G++   G+++ +k+ 
  MMETSP1061-20121228|7670_1 1695 NGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTA--EFPPSSGDATLAGYSVAN--EPEKTRRTVGYCPQFDAHFTNLTGREHVELYASIK----G---IPPSLVKEAAAAKLAEVGLSE-FDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDknvppaeRTSVILTTHSMEECEALCPR-IGIMAGGNLRCLGSAQQLKSK 1913
                  5688899*************************999986..56779**********987..45677777778899999999999988876543332....3...445666777888899999876.5555699***************************************99999999876533344446799999*****99*99995.789999998887777655555 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.7   0.3     2e-13   1.3e-11     321     395 ..     690     764 ..     683     768 .. 0.89
   2 !   17.5   0.0   4.1e-06   0.00027     129     216 ..     793     883 ..     778     900 .. 0.83
   3 !   24.2   0.0   3.9e-08   2.5e-06     320     381 ..    1681    1743 ..    1651    1759 .. 0.83
   4 !    7.4   0.0    0.0048      0.31     154     193 ..    1809    1848 ..    1762    1853 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.7 bits;  conditional E-value: 2e-13
   TIGR03719 321 kvievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqsrd 395
                 k iev+nl+kafg+k+ +ddl+++l  g i  ++G nGaGk+t + ++tg+  p sG  ++G     + +d  r+
  MMETSP1061-20121228|7670_1 690 KGIEVRNLKKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIRE 764
                 569********************************************************9997655566666665 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 4.1e-06
   TIGR03719 129 ekidaadawdldskleiamdalrlpeedakv.eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykG..tvvavth 216
                  +  +++  + + k++ +++ + l e+ +++  +lsGG kr+++++  +  + + +lldePt  +d  s  +  + +++y+   ++++ th
  MMETSP1061-20121228|7670_1 793 GMYSKMSYEEAEAKVDASIEDVALTEKRNTLsRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQnrCIILTTH 883
                 55556667789999*****999999887666268***********************************9999999999975226777777 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 3.9e-08
   TIGR03719  320 dkvievenlskafgd.klliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381 
                  d +i +++l k +g+ k  +d ls+ +p+g   G++G nGaGk+t + ++t +  p sG+ ++
  MMETSP1061-20121228|7670_1 1681 DDLIVLSQLGKVYGNgKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATL 1743
                  56788999*****864899***********************************999998765 PP

  == domain 4    score: 7.4 bits;  conditional E-value: 0.0048
   TIGR03719  154 eedakveklsGGekrrvalcrlllekPdlllldePtnhld 193 
                  ++d   +  sGG krr++l+   + +P++++lde    +d
  MMETSP1061-20121228|7670_1 1809 DSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVD 1848
                  5566677789***********************9876555 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0     1e-15   6.5e-14      22     206 ..     705     883 ..     692     895 .. 0.87
   2 !   42.1   0.0   2.2e-13   1.4e-11      19     194 ..    1695    1861 ..    1686    1881 .. 0.88

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 1e-15
   TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGv....ereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligif 206
                  +++++++++ +G+++al G+ GaGk t + +l +   p sg  +v    + +         + e+R + ig   q     P+++ +e va  ++ +G+    + eea+ak+++ ++ + ++e+  +l+    sGG k+++ +a a+  d   +LLdePt+ +d   r+   ++i++ +++++ +++  
  MMETSP1061-20121228|7670_1 705 IAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGG--KDI------RSGMDEIR-EGIGICLQHDCLFPQLTVREHVAFFARIKGMyskmSYEEAEAKVDASIEDVALTEKRNTLS-RNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTH 883
                 46899************************************9988765..555......46788999.89********99***********99999997222245778888889999***********9.889************************************************99988654 PP

  == domain 2    score: 42.1 bits;  conditional E-value: 2.2e-13
   TIGR02324   19 vklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGvereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelike 194 
                      +++++sl +  G++  l G  GaGk t + +l a++ p+sg  ++   g  v   + ++ +     r+t+gy  qf      ++ +e v+  +  +G++    +++a++ la + ++e       a +sGG k+R+ +a a+i +  i+ Lde  + +d   r+ +  ++++
  MMETSP1061-20121228|7670_1 1695 NGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLA--GYSV---ANEPEK----TRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSLVKEAAAAKLAEVGLSEFDSDRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSK 1861
                  55678999************************************998765..4555...333433....358**************************************************8877777*******************888999****999998888777666655 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   5.3e-15   3.4e-13       5     216 ..     693     903 ..     690     916 .. 0.82
   2 !   40.2   0.0   8.7e-13   5.6e-11       3     216 ..    1683    1901 ..    1681    1914 .. 0.78
   3 ?   -2.0   0.0       6.8   4.4e+02      66      90 ..    2055    2079 ..    2039    2090 .. 0.75

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 5.3e-15
   TIGR02323   5 evselsksygskkgcr.vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnpr.GlrmevsaGanigerllavgarhyGkiraaak.wlekveidaari.kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrv 216
                 ev++l k +g+k+++  +++ ly G++ +++G  G+Gk+t ++ l++ l++++G +t   ++    + ++ e     l      l    p+  +r +v+  a i    +   +  y +  a+    +e+v + ++r    +++sGGm+++l +a ++      v++ ept G+     r+   ++r+  +  + ++i+ th +  a +l +r+ +m +G++
  MMETSP1061-20121228|7670_1 693 EVRNLKKAFGEKIAVDdLQMnLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGMDEIREGIGICLQHD--CLF---PQlTVREHVAFFARIKG--MYS-KMSYEEAEAKVDaSIEDVALTEKRNtLSRNLSGGMKRKLSVAIAFCGDSETVLLdEPTSGMDPFSRRFTwnVIRQYRQ--NRCIILTTHfMDEADILGDRIAIMAEGQL 903
                 799************999999*********************************999998886666666665555444333..222...22367888888888865..433.446776666555599****999887699*************************99******88888887557777665..67899****999***************96 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 8.7e-13
   TIGR02323    3 llevselsksygskkgcr..vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelgl......aviivth.lavarllaqrllvmkqGrv 216 
                  l+ +s+l k yg++k     +s+ + pG+ +g++G  G+Gk+t +  l+a++ +++G++t +  s    + + +e  rr +  +     h      r +v   a i   +  + ++     + a+  l++   d++r   a +sGGm++rl +a + + +p++vf+ e + G+  v  r +  ++ ++v + ++      +vi+ th +  +  l+ r+ +m  G++
  MMETSP1061-20121228|7670_1 1683 LIVLSQLGKVYGNGKRAVdsLSLgIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYS----VANEPEKTRRTVGYCPQFDAHFTNLTGREHVELYASIKGIPPSL-VKEAAAAKLAEVGLSE--FDSDR-LAAGYSGGMKRRLSLATATIGNPQIVFLdECSTGVDPVARREIwgMVSKMVSDKNVppaertSVILTTHsMEECEALCPRIGIMAGGNL 1901
                  677899******9876543799999************************************9888....77779999997776655555555566688888888887776666.3333444444445554..45555.5789************************9999999888888766799999999876544444799999999999999999999987765 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 6.8
   TIGR02323   66 elellalseaerrlllrtewGlvhq 90  
                    +++a  ea++ +l+ +e+G+ + 
  MMETSP1061-20121228|7670_1 2055 IGDIFATVEANKDRLMVAEYGVSQT 2079
                  46899999*************8764 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   9.6e-18   6.3e-16     478     694 ..     692     908 ..     661     923 .. 0.76
   2 !   33.9   0.0   3.4e-11   2.2e-09     492     655 ..    1697    1856 ..    1665    1865 .. 0.83

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 9.6e-18
   TIGR03796 478 velrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlf.egtvrdnltlwde.....tipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr.RgctciivaHRLstiRd..cdeiivlerGkvverGt 694
                 +e+rn++ ++   e+  ++d++++l +Gq  Al G  G+Gk t   +++G+ +p+sG  ++ gk+ ++   + +++ + +  q+ +lf + tvr+ ++++ +     +  + +  +A  DA i+dv l+ +       +  ++nlsGG + +l +A a   +   ++lDE ts +D+   +   + +r+ R   cii++       d   d+i ++ +G++   G+
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAFG--EKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSGM-DEIREGIGICLQHDCLFpQLTVREHVAFFARikgmySKMSYEEAEAKVDASIEDVALTEKR------NTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQyRQNRCIILTTHFMDEADilGDRIAIMAEGQLRCIGS 908
                 88888887775..45789*********************************************9998865.55678888888877777578*********86221111122233456667777777655444......34579**************************************999999965788888876555544552258888888888766555 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 3.4e-11
   TIGR03796  492 apliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdq.divlfegtvrdnltlwde..tipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaid 655 
                  +  ++ +sl + pGq   l G  G+Gk t   +++  + p+sG+ ++ g + ++ p+++ + ++ +  q d  + + t r+ + l+ +   ip + + +A   A + +v l    +++++    +a +sGG + Rl +A a + nP i+ lDE  + +D+ + ++i 
  MMETSP1061-20121228|7670_1 1697 KRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKT-RRTVGYCPQfDAHFTNLTGREHVELYASikGIPPSLVKEA-AAAKLAEVGL---SEFDSDR--LAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIW 1856
                  456899*********************************************99987765.6677777774777778899*******85225676555554.4577766544...3555543..45669********************************9998885 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   8.6e-16   5.6e-14     480     692 ..     698     909 ..     675     924 .. 0.84
   2 !   37.4   0.0   3.7e-12   2.4e-10     474     657 ..    1684    1862 ..    1669    1916 .. 0.77

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 8.6e-16
   TIGR01193 480 sysyGygsev.ledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfif.sGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllkl.kdktiifvahrlsvakk.sdkiivldeGkiieqGsh 692
                 +    +g+++ ++d+++++ + + ++l+G  G+Gk+t + +l ++  ++sG  +++gk+++     e+r+ i    q+  +f + ++ e + + a+ +    ++      a +++ ie++ l  + +    + ++sgG k++l++a a+  ds+ ++lde ts +d    +   + + +  +++ ii+ +h ++ a+   d+i ++ eG++   Gs 
  MMETSP1061-20121228|7670_1 698 KK--AFGEKIaVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEIREGIGICLQHDCLFpQLTVREHVAFFARIKGMYSKMSYEEAEAKVDASIEDVALTEKRNT--LSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYrQNRCIILTTHFMDEADIlGDRIAIMAEGQLRCIGSS 909
                 43..455554389***********************************************86.67799*******9*99999446999********999999999988899999****9998766543..3699********************************9976655544444336899********99985379********98776665 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 3.7e-12
   TIGR01193  474 ievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsG.silenlllgak.envsqeeikkaveiaeikddieklplGyqtels.eeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllkl 657 
                  i+++++   yG g+++++ +sl i   +   l+G+ G+Gk+t + +l   f ++sG+ +l g s+++   ++ r+++ y Pq    f+  +  e + l a  +++    +k+a       +  +  ++G++   s   a+  sgG k+rl+la a + + +++ lde+++ +d +  + i   + k+
  MMETSP1061-20121228|7670_1 1684 IVLSQLGKVYGNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANE-PEKTRRTVGYCPQFDAHFTNlTGREHVELYASiKGIPPSLVKEA-------AAAKLAEVGLSEFDSdRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKM 1862
                  677888899*********************************************************95.567799*******8777764133344433332133333333332.......2233333444332220235789********************************9999986555444 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.0   0.0   5.9e-17   3.8e-15     496     708 ..     706     920 ..     667     923 .. 0.84
   2 !   29.6   0.0   7.2e-10   4.7e-08     498     704 ..    1701    1914 ..    1696    1920 .. 0.84

  Alignments for each domain:
  == domain 1    score: 53.0 bits;  conditional E-value: 5.9e-17
   TIGR00958 496 vlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsg.svreNiaYGltkte.deevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkqLmekedvyk 708
                  + dL ++l +G+++al G +G GK t +++l  +  Pt+G  ++ gk+++      +++ +++  q   lf + +vre +a+  + +    ++     +a+++  i+++  + + +       lsgG k ++ +A A   +   ++LDe tS +D  + +   +   + +++r ++l +h +  +    d+i+++ +g+++  G    L+++ +v +
  MMETSP1061-20121228|7670_1 706 AVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEIREGIGICLQHDCLFPQlTVREHVAFFARIKGmYSKMSYEEAEAKVDASIEDVALTEKRN--TLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNviRQYRQNRCIILTTHFMDEADIlGDRIAIMAEGQLRCIGSSLFLKKTYGVGY 920
                 5689**********************************************97.56789*************96549*******99998867788888899999*9999887665544..35679*********************************8777776656677899********99998852799*********99999888877766555 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 7.2e-10
   TIGR00958  498 kdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlf.sgsvreNia.Y.GltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa........eveqllqe..sksaksrtvlliahrLstvek.adkilvlkkgsvvelGthkqLmeke 704 
                    L++ + pG+   l G +G GK t + +l   + P +G+ +l g  + + + +  +r v+   q    f + + re +  Y  ++  +   v+ aa a  a+  +se++++            sgG k r+ +A A + +P+++ LDe    +D          v +++ +   + a+  +v+l +h ++ +e  + +i ++  g+++ lG  +qL++k 
  MMETSP1061-20121228|7670_1 1701 DSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVAN-EPEKTRRTVGYCPQFDAHFtNLTGREHVElYaSIKGIPPSLVKEAAAAKLAEVGLSEFDSDR------LAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPvarreiwgMVSKMVSDknVPPAERTSVILTTHSMEECEAlCPRIGIMAGGNLRCLGSAQQLKSKF 1914
                  67999******************************************987.66778999999999766661456788774252467777888999888888888888887653......345589******************************9899988877777777644566777789999*******97589999****************8765 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.8   0.0   1.1e-15   7.1e-14     438     673 ..     674     907 ..     671     921 .. 0.81
   2 !   34.1   0.0   3.2e-11   2.1e-09     472     681 ..    1699    1913 ..    1684    1924 .. 0.76

  Alignments for each domain:
  == domain 1    score: 48.8 bits;  conditional E-value: 1.1e-15
   TIGR01846 438 PteassagkaalpelkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdnial.akPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvr.aadrilvlekGkivesG 673
                 P+e+ s+++         ie++n++  + e     +++l++++ +G++  + G+ G+Gk+t   +l  +  P  G   v g+d+       +r  +g+ lq + lf + ++r+ +a  a+ +    k+ +    a   + i+++     ++ +    +lsGG ++++++a a+ ++   ++lde ts +d  s +   + +r+  ++r +i  +h ++      dri ++ +G++   G
  MMETSP1061-20121228|7670_1 674 PAEPVSSALREQGAQGKGIEVRNLKKAFGEKI--AVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEIREGIGICLQHDCLFPQlTVREHVAFfARIKGMYSKMSYEEAEAKVDASIEDVAL--TEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMDEADiLGDRIAIMAEGQLRCIG 907
                 56666644444444444577777766666554..479**********************************************975.45689**************6548****99725556666777777777777777776654..3444455679**********************************************************98765268*********987666 PP

  == domain 2    score: 34.1 bits;  conditional E-value: 3.2e-11
   TIGR01846  472 vlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdnial..akPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic.......kgrt.viiiahrlstvra.adrilvlekGkivesGkheellak 681 
                   ++ lsl i++G+  G+ G  G+Gk+t   +l   + P  G   + g  +a  +P   rr vg   q +  f + + r+ + l  +  +i+   v +aa    a+  +s     ++   +   a  sGG ++r++la a ++nP+i+ lde  + +d  + + i   ++++        ++rt vi  +h ++   a + ri ++  G++   G+ ++l +k
  MMETSP1061-20121228|7670_1 1699 AVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVAN-EPEKTRRTVGYCPQFDAHFTNlTGREHVELyaSIKGIPPSLVKEAAAAKLAEVGLS----EFDS--DRLAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVsdknvppAERTsVILTTHSMEECEAlCPRIGIMAGGNLRCLGSAQQLKSK 1913
                  5789**********************************************95.8*************877776525688877622445677666655543333333333....3443..4556789*******************************99888887666665411111123566355667888877644888888888888888877777655 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0   6.3e-17   4.1e-15     780     959 ..     708     882 ..     692     901 .. 0.80
   2 !   20.6   0.0   2.4e-07   1.6e-05     780     863 ..    1701    1784 ..    1686    1795 .. 0.76
   3 !   15.1   0.0   1.1e-05   0.00072     206     303 ..    1813    1915 ..    1795    1940 .. 0.78

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 6.3e-17
   TIGR00956 780 devdGwvkPGkltALmGasGAGkttLlnvLaeRv..ttGvitegdrlvngrkldssFq...RsiGYvqqqDlHletstvreaLrfsAylRq.pkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCti 959
                 d+++  +  G++tAL+G  GAGktt + +L++ +  t G+ t     v+g+++ s  +     iG + q+D   ++ tvre + f A+++   +++s +e +  v++ i+ + l++  + +       L+   +++l++++         + lDePtsG+D  +   + +++r+  ++   il t 
  MMETSP1061-20121228|7670_1 708 DDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLapTSGYAT-----VGGKDIRSGMDeirEGIGICLQHDCLFPQLTVREHVAFFARIKGmYSKMSYEEAEAKVDASIEDVALTEKRNTLSR----NLSGGMKRKLSVAIAFCGDS-ETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIIL-TT 882
                 666666778*********************997633556555.....88888887765221469*************************962578999********************99865....566666899********999.5688*********9887777777777665544444.44 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 2.4e-07
   TIGR00956  780 devdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkld..ssFqRsiGYvqqqDlHletstvreaLrfsAyl 863 
                  d ++  + PG+   L+G  GAGktt + +L+         ++  l +    +  +  +R++GY+ q D H ++ t re ++  A +
  MMETSP1061-20121228|7670_1 1701 DSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPP--SSGDATLAGYSVANepEKTRRTVGYCPQFDAHFTNLTGREHVELYASI 1784
                  55555678**********************987543..334445555443331145689*******************99877765 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 1.1e-05
   TIGR00956  206 lvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaei.....lkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadkakeyFe 303 
                  l  G sGG ++R+s+a +++++++i ++D+ ++G+D     e+  ++ ++++      ++ t+++    + ++   l  ++ ++  G+    G+a++ k+ F 
  MMETSP1061-20121228|7670_1 1813 LAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDknvppAERTSVILTTHSMEECEALCPRIGIMAGGNLRCLGSAQQLKSKFG 1915
                  56799*******************************9998888777766655311122456777777777777777788888888888878888877777665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.1   2.4e-15   1.5e-13     452     680 ..     692     921 ..     677     925 .. 0.81
   2 !   26.8   0.0     6e-09   3.9e-07     459     633 ..    1691    1861 ..    1678    1919 .. 0.72

  Alignments for each domain:
  == domain 1    score: 47.9 bits;  conditional E-value: 2.4e-15
   TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsg.sileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRivi..AHRLSTi.rnadrilvleeGrvveqGsyeeLlakeGlfae 680
                 iev++++ ++    +  +dd+ ++   G+  a+ G  G+GK t + +L g   P+sG     G+d+++  ++++R  +G+ LQ+  l++  ++ e +a  a++         ++a  + D +     l    +  + +lSGG + +l +A a     + +l+DE TS +D  + +   + + + +  R +i   H +       dri +++eG++   Gs   L ++ G+ ++
  MMETSP1061-20121228|7670_1 692 IEVRNLKKAF--GEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEIREGIGICLQHDCLFPQlTVREHVAFFARIKGMYSKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIIltTHFMDEAdILGDRIAIMAEGQLRCIGSSLFLKKTYGVGYQ 921
                 6666666666..456789************************************************87.6889*************99974577777777775554444444444444444444455666667789****************************************************88844577765413479*********9999987777777776655 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 6e-09
   TIGR03797  459 FrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDi..kamPmglhTviseg.ggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslek 633 
                    Y  +g++ +d++sl i pG+  ++ G  G+GK t + +L +   P+sG     G+ +++ + ++ Rr +G   Q         ++n++g +++ l +  + +  + ++e    k    gl    s+  +++ SGG + Rl +A a +  P+i+++DE    +D  + + +   ++k
  MMETSP1061-20121228|7670_1 1691 KVY-GNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVAN-EPEKTRRTVGYCPQFDA-----HFTNLTGREHVELYASIKGIPPSLVKEAAaaKLAEVGLSEFDSDRlAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSK 1861
                  556.5789999******************************99999*************98.88999******988533.....34445554444444444444333332222002233455555554326789**************************999998776655544444 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.6   0.0   6.5e-15   4.2e-13     334     531 ..     691     886 ..     671     924 .. 0.78
   2 !   27.0   0.0   5.6e-09   3.7e-07     344     503 ..    1693    1848 ..    1680    1878 .. 0.83

  Alignments for each domain:
  == domain 1    score: 46.6 bits;  conditional E-value: 6.5e-15
   TIGR01192 334 avefrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagll.nrsirenirl.gredatdeev....veaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrls 531
                  +e r+++  f + +  v d+ ++  +gq  a++g  gagktt i +l  +  p+sg+ ++ g di +   + +r+ i   +q   l+ + ++re + +  r +    ++     ea   a+ +d      ++          +lsgg +++l++a a   ++  ++lde ts +d  +     + i   r+nr  ++ +h + 
  MMETSP1061-20121228|7670_1 691 GIEVRNLKKAFGE-KIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRSG-MDEIREGIGICLQHDCLFpQLTVREHVAFfARIKGMYSKMsyeeAEAKVDASIEDVALTEKRN------TLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMD 886
                 4888888888875.678*************************************************995.6789*********999993469****9862343333333210003333334444443333332......23458**********************************99999***********9999999764 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 5.6e-09
   TIGR01192  344 fanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfq.dagllnrsirenirlgredatdeevv.eaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsald 503 
                  + n ++ v  +s+ +  gq   ++g  gagktt + +l   + p+sg  ++ g  +a    ++ r+++    q da + n + re ++l       + +     k aaa+ + e  l ++d+      +  sgg ++rl++a a + n  i+ lde ++ +d
  MMETSP1061-20121228|7670_1 1693 YGNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKT-RRTVGYCPQfDAHFTNLTGREHVELYAS---IKGIPpSLVKEAAAAKLAEVGLSEFDSDRL--AAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVD 1848
                  789999**************************************************9876665.6666666554*************99654...333331335566666777788888887544..4558*************************998887 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.9e-11   1.2e-09     354     546 ..     704     902 ..     688     906 .. 0.79
   2 !   17.4   0.0   4.4e-06   0.00029     359     507 ..    1702    1854 ..    1690    1863 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.9e-11
   TIGR01194 354 gfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpde.kkqasldqattylsrleledkv..kvedlnys.....tttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvish.ddryfeladrlikladGk 546
                   a+  +++++ sG++  ++G nG Gk+t i +l G+  p +G   + G+ + +   d+ r+     +    lf +l   ++    a ++     +s  e e kv  ++ed + +      + +ls G +++l++  a+  +   +llde ++  dp  +r+ ++ +     r+ + i++ +h  d+   l dr+  +a+G+
  MMETSP1061-20121228|7670_1 704 KIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKDIRS-GMDEIREGIGICLQHDCLFPQLTVREHvAFFARIKGMYSKMSYEEAEAKVdaSIEDVALTekrntLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVI-R-QYRQNRCIILTTHfMDEADILGDRIAIMAEGQ 902
                 566777889999**************************************9975.5789999999999999999999763321334555555566666677778744577766542111135689*******************************98888777654.3.46999999999994477777899999999886 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 4.4e-06
   TIGR01194  359 pidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekk.qasldqattylsrleledkvkvedl.nyst...ttdlstGqrkrlalvnayleerpvllldewaadqdpafkrv 507 
                   + l i  G+   ++G nG Gk+t + +l   + p +G+  l G +v++e     r +  +   d + f +l + ++ +  as++     l +   + k+   +l ++ +   ++  s G ++rl+l +a + +  ++ lde ++  dp  +r 
  MMETSP1061-20121228|7670_1 1702 SLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGYSVANEPEKTRRTVGYCPQFDAH-FTNLTGREHVElYASIKGIPPSLVKEAAAAKLAEVGLsEFDSdrlAAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARRE 1854
                  56788888999999************************************99999998666666766.66677755544268888888888887777776555441454212245678899****************************99995 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   4.2e-08   2.7e-06     634     850 ..     689     914 ..     669     976 .. 0.70
   2 !   22.2   0.0   6.7e-08   4.4e-06     653     897 ..    1699    1961 ..    1669    2027 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 4.2e-08
   TIGR00957 634 gnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgs............vayvpqq.awiqndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpq.vdviivlsdgkisemgsyqelld 850
                 g+ i v+n     a +e  +++ l++++  g + a++g+ g gk++ +s l + +    g  ++ g             +    q  +   + ++re + f  +++  y k   e      d  i       +      nlsgg k+++s+a a   d++  lld+p s +d    +  + +vi      +n+  il th +       d i ++++g++  +gs   l +
  MMETSP1061-20121228|7670_1 689 GKGIEVRNL--KKAFGEKIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGMLAPTSGYATVGGKdirsgmdeiregIGICLQHdCLFPQLTVREHVAFFARIKGMYSKMSYEEAEAKVDASIEDVALTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTW-NVIR--QYRQNRCIILTTHFMDEADIlGDRIAIMAEGQLRCIGSSLFLKK 914
                 455566553..4555677788999999999999999999999999998888877776666665544311111111111133333331344456789999999999999999888877777777766555544455567899999999999999999999999999999999998777666.5664..46789999999999987654158899999999999998554444 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 6.7e-08
   TIGR00957  653 tlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkg............svayvpq.qawiqndslrenilfgkaleekyykavleac.alladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhif...ekvigpkgll.knktr.ilvthgisylpq.vdviivlsdgkisemgsyqelldrdgafaeflrty..asaedeldae..ddgvasvsaedkeaklvedgllvtd 897 
                  ++++l+l ip g    ++g  g gk++ +  l ae+    g  +l g            +v y pq +a   n + re + +  +++      v ea  a la++ +    d   +       sgg k+r+sla a   + +i +ld+  + vd    + i+    k++  k +  +++t  il th++         i ++++g++  +gs q+l ++ g   +  ++    ++ d+  ++   + ++   a   e   +e+g  +  
  MMETSP1061-20121228|7670_1 1699 AVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAEFPPSSGDATLAGysvanepektrrTVGYCPQfDAHFTNLTGREHVELYASIKGIPPSLVKEAAaAKLAEVGLS-EFDSDRL---AAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWgmvSKMVSDKNVPpAERTSvILTTHSMEECEAlCPRIGIMAGGNLRCLGSAQQLKSKFGQGYQVEMKIksVETTDQDYLDilAKLATI--AGVTEEEAIENGEEIFL 1961
                  578999******************************9999999998763333332222246689986699999999**998888888777777777651567777654.3333333...3458*******************************99989887222466788887525566527889***876551567889***************9997765444333300333333322200222222..22344455666654433 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.5e-07   9.8e-06    1218    1413 ..     692     886 ..     679     908 .. 0.74
   2 !   20.2   0.0   2.8e-07   1.8e-05    1218    1438 ..    1684    1910 ..    1649    1953 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.5e-07
   TIGR01271 1218 mtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallr.llstegeiqidgvswnsvtlqkwrkafgvipqkvfils.gtfrknldpyeqysdeeiwkvaee..vglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrve 1413
                  ++v++l   + e  +  ++dl + + +gq   llg  g+gk+t +s l   l+ t g  ++ g    s  +++ r  +g+  q+  ++   t r  +  +++          ee    + + ie+    l  +       ls g k+ + +a +    +  +lldep++ +dp + +   + ++q   n  +il+ h ++
  MMETSP1061-20121228|7670_1  692 IEVRNLKKAFGE--KIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGmLAPTSGYATVGGKDIRS-GMDEIREGIGICLQHDCLFPqLTVREHVAFFARIKGMYSKMSYEEaeAKVDASIEDVA--LTEKRNTLSRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSGMDPFSRRFTWNVIRQYRQNRCIILTTHFMD 886 
                  556666555444..456799999999999999999999999999999986256799999999988887.6899999999999988777515899999999987665443334440044555666543..44444455667999999999999999999999999999999999998888888888888888999888764 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 2.8e-07
   TIGR01271 1218 mtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallr.llstegeiqidgvswnsvtlqkwrkafgvipqkvfilsg.tfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsn........ctvilsehrveal.lecqqflviegssvkqydsiqkl 1438
                  + + +l   y + g+  ++ ls+ + +gq  gllg  g+gk+t +  l   +  + g+ ++ g s      +k r++ g  pq    ++  t r  ++ y+         + +e     + e     +d      gy  s g k+ + la + +   +i++lde s+ +dpv+ + i   + +  s+         +vil+ h +e     c ++ ++ g +++   s q+l
  MMETSP1061-20121228|7670_1 1684 IVLSQLGKVYGN-GKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTAeFPPSSGDATLAGYSVAN-EPEKTRRTVGYCPQFDAHFTNlTGREHVELYASIKGIPPS-LVKEAAAAKLAEVGLSEFDSDRLAAGY--SGGMKRRLSLATATIGNPQIVFLDECSTGVDPVARREIWGMVSKMVSDknvppaerTSVILTTHSMEECeALCPRIGIMAGGNLRCLGSAQQL 1910
                  455566666665.5555699***********************9999875266799*******99876.4578899*******76666543889999999977655443.444555556677777777777777787..99*******************************987776666666655222222224678888888754144777777777777777777776 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00047     0.031      77     104 ..     715     742 ..     682     754 .. 0.79
   2 !   10.0   0.1    0.0012     0.078      84     103 ..    1715    1734 ..    1710    1745 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00047
   TIGR00064  77 kkpnvillvGvNGvGKTttiaKlakllk 104
                  + ++  l G NG+GKTtti+ l+ +l+
  MMETSP1061-20121228|7670_1 715 YSGQITALLGHNGAGKTTTISMLTGMLA 742
                 4567999**************9998875 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.0012
   TIGR00064   84 lvGvNGvGKTttiaKlakll 103 
                  l G+NG+GKTtt++ l++ +
  MMETSP1061-20121228|7670_1 1715 LLGINGAGKTTTMGMLTAEF 1734
                  78************998765 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.1e-05    0.0014     174     220 ..     694     739 ..     674     751 .. 0.83
   2 ?    5.2   0.1      0.06       3.9     198     222 ..    1710    1734 ..    1704    1743 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.1e-05
   TIGR03499 174 reklreaLekklsvkkeedeilekggviaLvGptGvGKTTTlAKLAa 220
                 +++l++a  +k+ v++ + ++ + + + aL+G  G GKTTT+  L  
  MMETSP1061-20121228|7670_1 694 VRNLKKAFGEKIAVDDLQMNLYSGQ-ITALLGHNGAGKTTTISMLTG 739
                 6789999999**9999999998888.****************87765 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.06
   TIGR03499  198 ggviaLvGptGvGKTTTlAKLAarf 222 
                  g+++ L+G  G GKTTT   L a+f
  MMETSP1061-20121228|7670_1 1710 GQCFGLLGINGAGKTTTMGMLTAEF 1734
                  56889************98888876 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.026       1.7     466     613 ..     704     856 ..     688     876 .. 0.66
   2 !   10.7   0.0   0.00041     0.027     448     616 ..    1679    1849 ..    1653    1863 .. 0.75

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.026
   TIGR00954 466 dvlieeLsfevksGnhlLiiGPnGcGKsslfRilge.lWPvyg...........glltkpeegklFyvPqrPYmslg.tlRdqiiYPdssedfker...glsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsA 613
                 ++ +++L++++ sG+   ++G nG GK     +l++ l P+ g           g+  +  ++ +    q+  +  + t+R+ + +  +++ + ++   +  ++++ + +e v L+   e+  ++      +  LsgG k ++++A  f    + ++LDE ts 
  MMETSP1061-20121228|7670_1 704 KIAVDDLQMNLYSGQITALLGHNGAGKTTTISMLTGmLAPTSGyatvggkdirsGMDEI--REGIGICLQHDCLFPQlTVREHVAFFARIKGMYSKmsyEEAEAKVDASIEDVALT---EKRNTL------SRNLSGGMKRKLSVAIAFCGDSETVLLDEPTSG 856
                 57799**********************98888776526788777777766543322222..3334444455544444477777777777777777743323333344444444443...333333......456777777777777777777777777777775 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00041
   TIGR00954  448 aqdngikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilg.elWPvyg.......glltkpee..gklFyvPq.rPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsv 616 
                  a+d+ i + ++  v  +g+  +++Ls+ ++ G+   ++G nG GK   + +l+ e+ P  g        +   pe+    + y Pq    +++ t R+ +    s++ +    ++++   + L ev L++        d +       sgG k R+++A      P+ + LDEc   v +
  MMETSP1061-20121228|7670_1 1679 ANDDLIVLSQLGKVYGNGKRAVDSLSLGIPPGQCFGLLGINGAGKTTTMGMLTaEFPPSSGdatlagySVANEPEKtrRTVGYCPQfDAHFTNLTGREHVELYASIKGIPPSLVKEAA-AAKLAEVGLSEFDS-----DRL---AAGYSGGMKRRLSLATATIGNPQIVFLDECSTGVDP 1849
                  478888889999999999***************************9999888615555555989987755555555114689999955789999999999877788777665555544.34456666665433.....333...34579*************************988865 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.1      0.24        16      10      34 ..     723     748 ..     715     759 .. 0.80
   2 ?    6.0   0.0     0.029       1.9      11      32 ..    1717    1738 ..    1713    1757 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.24
   TIGR00041  10 EGidGaGKTtqlellkkllke.eglk 34 
                  G +GaGKTt + +l  +l    g++
  MMETSP1061-20121228|7670_1 723 LGHNGAGKTTTISMLTGMLAPtSGYA 748
                 5889**********999888755655 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.029
   TIGR00041   11 GidGaGKTtqlellkkllkeeg 32  
                  Gi+GaGKTt + +l + ++  +
  MMETSP1061-20121228|7670_1 1717 GINGAGKTTTMGMLTAEFPPSS 1738
                  9*************99998844 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.1      0.76        50     130     160 ..     710     740 ..     675     751 .. 0.84
   2 ?    8.8   0.1     0.002      0.13     122     159 ..    1694    1732 ..    1685    1736 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.76
   TIGR03496 130 alltvgkGqrlglfagsGvGKsvLlgmlara 160
                   + + +Gq  +l+   G GK++ ++ml+ +
  MMETSP1061-20121228|7670_1 710 LQMNLYSGQITALLGHNGAGKTTTISMLTGM 740
                 4567889******************999865 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.002
   TIGR03496  122 dvGvrainal.ltvgkGqrlglfagsGvGKsvLlgmlar 159 
                    G ra+++l l +  Gq  gl+   G GK++ +gml+ 
  MMETSP1061-20121228|7670_1 1694 GNGKRAVDSLsLGIPPGQCFGLLGINGAGKTTTMGMLTA 1732
                  5699****9867899**********************85 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       4.4   2.9e+02     141     167 ..     712     738 ..     695     745 .. 0.81
   2 ?    8.2   0.1    0.0029      0.19     130     168 ..    1693    1732 ..    1670    1743 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 4.4
   TIGR02546 141 ltvgeGqRiGifaeaGvGkstLlsmia 167
                 + + +Gq   + ++ G+Gk+t +sm+ 
  MMETSP1061-20121228|7670_1 712 MNLYSGQITALLGHNGAGKTTTISMLT 738
                 56778999999**********999986 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0029
   TIGR02546  130 lalGvraiDgl.ltvgeGqRiGifaeaGvGkstLlsmiar 168 
                     G ra+D+l l +  Gq  G+ +  G+Gk+t ++m+  
  MMETSP1061-20121228|7670_1 1693 YGNGKRAVDSLsLGIPPGQCFGLLGINGAGKTTTMGMLTA 1732
                  56799*****978999*********************976 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.2       5.2   3.4e+02      30      44 ..     723     737 ..     722     741 .. 0.86
   2 ?    5.8   0.0    0.0079      0.51    1280    1307 ..    1834    1861 ..    1826    1865 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5.2
   TIGR02680  30 RGnNGaGKSkvLell 44 
                  G+NGaGK  ++++l
  MMETSP1061-20121228|7670_1 723 LGHNGAGKTTTISML 737
                 59***********98 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0079
   TIGR02680 1280 APrlilLDeaFagvDeaaraklfgLlee 1307
                   P+++ LDe   gvD +ar++++g++ +
  MMETSP1061-20121228|7670_1 1834 NPQIVFLDECSTGVDPVARREIWGMVSK 1861
                  69***********************986 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0     0.026       1.7      26      48 ..     715     737 ..     699     746 .. 0.79
   2 ?   -1.7   0.0       1.3        86    1213    1237 ..     834     858 ..     831     861 .. 0.90
   3 ?   -2.1   0.1       1.7   1.1e+02      33      59 ..    1715    1737 ..    1711    1751 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.026
   TIGR00606  26 flsPltllvGPnGaGkttiieal 48 
                 +   +t l G nGaGktt+i  l
  MMETSP1061-20121228|7670_1 715 YSGQITALLGHNGAGKTTTISML 737
                 444689**************987 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.3
   TIGR00606 1213 rlalaevfclnCgiialdePttnld 1237
                  +l++a  fc++   + ldePt  +d
  MMETSP1061-20121228|7670_1  834 KLSVAIAFCGDSETVLLDEPTSGMD 858 
                  5788999**************9988 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 1.7
   TIGR00606   33 lvGPnGaGkttiiealkyittGdlPpg 59  
                  l G nGaGktt++  l    t ++Pp 
  MMETSP1061-20121228|7670_1 1715 LLGINGAGKTTTMGML----TAEFPPS 1737
                  6799********9877....6666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        85  (0.0207216); expected 4.1 (0.001)
Passed Fwd filter:                        63  (0.0153584); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              63  [number of targets reported over threshold]
# CPU time: 2.81u 0.21s 00:00:03.02 Elapsed: 00:00:01.67
# Mc/sec: 1661.32
//
Query:       MMETSP1061-20121228|7683_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|7675_1  [L=728]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-05   19.1   0.0     0.0003   17.3   0.0    1.8  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    0.00045   16.9   0.1       0.08    9.5   0.0    2.8  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
  ------ inclusion threshold ------
      0.075    9.6   0.0       0.72    6.4   0.0    2.3  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family


Domain annotation for each model (and alignments):
>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.12   1.7e+02     142     156 ..      81      95 ..      75     105 .. 0.78
   2 !   17.3   0.0   2.2e-07    0.0003     272     321 ..     329     379 ..     299     384 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.12
   TIGR01318 142 krvaviGaGpaGlac 156
                   vaviG+Gp+ l  
  MMETSP1061-20121228|7675_1  81 TSVAVIGGGPSALFL 95 
                 579*******98854 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 2.2e-07
   TIGR01318 272 eeeepl.idveGkrvvvlGGGdtamdcvrtairlgakkvtcvyrrdeanmp 321
                 +++ ++  dveGkrv+++GGG +a d    ai++ga++v    r +ea+m 
  MMETSP1061-20121228|7675_1 329 SDTSQFkQDVEGKRVLLIGGGYSAEDLALMAIKEGAARVYNTCRDEEADMT 379
                 444555269******************************999999999996 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0038       5.2     106     152 ..      52      99 ..      20     132 .. 0.76
   2 !    9.5   0.0   5.9e-05      0.08     271     311 ..     339     380 ..     321     473 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0038
   TIGR01316 106 iGalerfvadyarehGieeeeekapst.kkkvaviGaGpaGlavasel 152
                 + + e +   ++r++   +   ++ps   + vaviG Gp+ l   + l
  MMETSP1061-20121228|7675_1  52 VNQAESYQIQFNRIESNPIMLVREPSNaPTSVAVIGGGPSALFLCHAL 99 
                 5566777788888888877777777651578********999776643 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 5.9e-05
   TIGR01316 271 vgkkvvviGgGntavdaartalrlGae.vhvvyrrtredmta 311
                  gk+v++iGgG+ a d a  a + Ga  v    r   +dmt 
  MMETSP1061-20121228|7675_1 339 EGKRVLLIGGGYSAEDLALMAIKEGAArVYNTCRDEEADMTL 380
                 39***********************97566666666667664 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.055        75       2      23 ..      83     106 ..      82     109 .. 0.77
   2 ?    6.4   0.0   0.00053      0.72     152     255 ..     340     451 ..     329     465 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.055
   TIGR04018   2 viiiGaGPiG..laaaieakkagl 23 
                 v +iG+GP    l+ a+e+++++l
  MMETSP1061-20121228|7675_1  83 VAVIGGGPSAlfLCHALEIQRREL 106
                 789999998722578999999877 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00053
   TIGR04018 152 kqkvvvvGgknsavdaalelyrkga.evtlvvrgeelsekvkyWvkpdlenrikegkikalfesevk..eie....eesvtletpegeve.eiendfvlaltGyrpdlelle 255
                 +++v+++Gg  sa d al   ++ga +v   +r+ee + ++      d+    +   ++ +  s+v+  ++e     +s   +t + + +   + d +++ tGy++++++le
  MMETSP1061-20121228|7675_1 340 GKRVLLIGGGYSAEDLALMAIKEGAaRVYNTCRDEEADMTLTTRWPYDMVTVYAGCALEKVCGSTVTlqNVEwdaeTRSFLPDTDQPKRKvLANIDTIIICTGYNANTNMLE 451
                 57899************99999986269899999999888765445555555555555555555443213321110222333333333330345588888888888888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (728 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.38
# Mc/sec: 2528.63
//
Query:       MMETSP1061-20121228|7684_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1275.89
//
Query:       MMETSP1061-20121228|7685_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00062   17.0   0.1      0.005   14.0   0.1    2.0  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0013   15.9   1.8     0.0065   13.6   1.2    2.0  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.045   11.4   0.3       0.72    7.4   0.2    2.6  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   3.7e-06     0.005      62     147 ..     241     349 ..     207     366 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.7e-06
   TIGR01934  62 e......akvtgvDlseemLevakkkakek.....eean...vefieadaeeLpfednsfdav..........tiafGlRNvtdiekaLkelaRVlkpggrlvilefskp 147
                 +      +k++ +D s++++e+ k+  +++     ++++   + + +ada +L+++++sf+++          + + G    ++ +k ++e+aRVlk gg ++i+   + 
  MMETSP1061-20121228|7685_1 241 QdplsivQKIVCLDYSKNVIETMKEEQQKNqvqgdAKEKvpsLLYEVADARQLSYQNESFEMIlekgtldamlSDSNGS-GQENCRKIVSECARVLKVGGYIIIISHLNA 349
                 04455668999******999988765544322233233311256999*************9874444222111223332.246778999**************9987665 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   1.2   4.8e-06    0.0065      73     160 ..     238     353 ..     194     363 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.8e-06
   TIGR01983  73 e...........vtgiDlseelievAklhakkdplk........kieyelksveelaeeekesfDvvlamEvlEHv.........adleeilkecaellkpggi.lflstinrtlks 160
                 +           ++ +D s+++ie+ k+ ++k++++        ++ ye++++ +l+ + +esf+++l    l+ +         ++ ++i+ eca++lk gg  +++s +n  + s
  MMETSP1061-20121228|7685_1 238 SigqdplsivqkIVCLDYSKNVIETMKEEQQKNQVQgdakekvpSLLYEVADARQLSYQ-NESFEMILEKGTLDAMlsdsngsgqENCRKIVSECARVLKVGGYiIIISHLNARVES 353
                 2222333332347789*********************9999988788888888888777.566888887766655422222323267899************961568999987776 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.2   0.00052      0.72      35     130 ..     211     341 ..     202     350 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00052
   TIGR02072  35 pakvLdiGcGtGiltrallkrfpq.............aelialDiseemleqakkkls.............nvqficgdieklplekksfDliv.........SnlalQWlddlsevlaelarvlkpgGll 130
                 p++vL++GcG + l r l+ ++++             ++++ lD s++ +e++k++++             ++ +  +d+++l+ +++sf++i          S +     ++ +++++e+arvlk gG++
  MMETSP1061-20121228|7685_1 211 PISVLEVGCGDAPLGRDLALSIQEcgisigqdplsivQKIVCLDYSKNVIETMKEEQQknqvqgdakekvpSLLYEVADARQLSYQNESFEMILekgtldamlSDSNGSGQENCRKIVSECARVLKVGGYI 341
                 67788888888888887776665422222323333326788999999999999988888888888888888777777888888887777666541111111113333344466666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.26
# Mc/sec: 2233.66
//
Query:       MMETSP1061-20121228|7686_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2040.33
//
Query:       MMETSP1061-20121228|7691_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 835.93
//
Query:       MMETSP1061-20121228|7692_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 545.95
//
Query:       MMETSP1061-20121228|7687_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-142  473.7   0.0   4.2e-142  472.3   0.0    1.6  1  TIGR01134 purF: amidophosphoribosyltransferase
    4.7e-21   72.7   0.1    6.1e-21   72.3   0.1    1.1  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
    3.2e-13   47.3   0.0    4.3e-13   46.9   0.0    1.2  1  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
    1.2e-07   28.8   0.0    2.2e-06   24.6   0.0    2.1  2  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
    4.4e-06   24.6   0.1    1.4e-05   23.0   0.0    1.8  2  TIGR00201 comF: comF family protein
    5.3e-06   22.8   0.0    0.00014   18.0   0.0    2.1  2  TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase
    1.4e-05   21.8   0.0    0.00041   16.9   0.0    2.3  2  TIGR03108 eps_aminotran_1: exosortase A system-associated amidotransferase 1
    0.00091   16.1   0.0     0.0018   15.1   0.0    1.4  1  TIGR01743 purR_Bsub: pur operon repressor PurR
     0.0016   16.0   0.0     0.0054   14.3   0.0    1.8  2  TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
  ------ inclusion threshold ------
      0.011   13.7   0.0      0.026   12.5   0.0    1.6  1  TIGR01090 apt: adenine phosphoribosyltransferase
      0.018   12.5   0.0      0.042   11.3   0.0    1.6  2  TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
      0.021   12.3   0.0      0.045   11.2   0.0    1.5  1  TIGR01744 XPRTase: xanthine phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01134  purF: amidophosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  472.3   0.0  1.2e-144  4.2e-142       1     431 [.       2     497 ..       2     498 .. 0.92

  Alignments for each domain:
  == domain 1    score: 472.3 bits;  conditional E-value: 1.2e-144
   TIGR01134   1 CgvvGvvseeeaa...eltYyaLlaLQHRGQeaaGvavsdgeklrlkkgnGlvsdvfeeekleklkgkvaagHvRYsTaGsskseeaqPlvvssavgglalaHNGnlvnaeelreeleeegrkfntssDsevllallaee.e..............eskeelekavaevlervkGaYalvlmse.eklvavrDPvGvrPLvlgrkedg.......................yvvaSEsvAld.lgaelvrdvepgevvvlkdge..lesrlveerk..aacvfEyvYfaRpDSv.dgesvyearvemGeelaees.....pveaDvvvpvpdsgvsaalgfaeesgvpyleglvkNrYvGRtFm.PtqeeReksvrlkLnpvreevegkrvvlvDDS.VRGtTsrqv.emlReaGAkevhvr.asppvraPcvyG.dmptreellaaksteeeae..lgaDslaylslegleaave......ekeeklclacftgey 431
                 Cg+v +   +e+a   +l++++L++LQHRGQ+aaG++++d+++l+l+k+nGlv+dvf+++++++l+g+ + gHvRY+TaGss+ +eaqPl+++ + g +++aHNGnl+n++el e++ + +r++nt+sDse+ll+ +ae+ +              +  ++ ++++++v++++kG+Ya + m +  +lv++rDP+G+rPLv+g ++++                       y++aSEsvA+d lg+ lvrd+++ge++ ++ ++   + r++ +++  ++c+fEyvYfaRpDS+ dg svye+r++mGe+la++      + + Dvv+p+p++++++al++a+ +gvp++eg vkNrY+ RtF+ P+q++R+ksvrlkLn+++ e++gk+v+lvDDS VRGtT +++ +m+ReaGAk+v+++ a+pp+r+P++yG d+ptr+el+a +++e+e++  +g+D ++y++l++lea+v+      ++ +k++++cf+g y
  MMETSP1061-20121228|7687_1   2 CGIVALLLADENAwvnQLLFDGLTVLQHRGQDAAGMVTADRKRLHLRKDNGLVRDVFQQDNMTQLRGNIGLGHVRYPTAGSSSCAEAQPLYTNYPHG-ISVAHNGNLTNTDELYEQMLQIQRHVNTDSDSEILLNCFAESlNkhqrisfnnenkeqTIIDDIFNTCTDVMNQCKGGYATTYMINgVGLVGFRDPNGIRPLVIGCRSSDpedkgrtwtaesveelsatkkfdYCMASESVAIDaLGFGLVRDIAAGEAFFVDMNTgkCHFRQCLKDAstTPCIFEYVYFARPDSIiDGVSVYESRLKMGEKLADKIkrihpDHDIDVVIPIPETARTTALQTAHFLGVPFREGYVKNRYIARTFImPGQAKRKKSVRLKLNTIKPEFAGKNVLLVDDSiVRGTTANEIvQMAREAGAKKVYFCsAAPPIRYPNIYGiDIPTRSELIAYEREEDEIAvkIGCDWVMYQDLNDLEASVTelatpeQPLTKFDTSCFNGVY 497
                 888888777766556699****************************************************************99**********965.9**************************************9876478999999876543335678899999**********9888652689***************5444447889*******************************************98776554458888887777789*********************************9987776677899**************************************88*****************************************99*************99***************************9999888*****************9989877777899********99 PP

>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.1   1.8e-23   6.1e-21       1     142 [.       2     147 ..       2     187 .. 0.88

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 1.8e-23
   TIGR01135   1 CGivgyige.re..aaeilleglkrLEYRGYDSaGiAvveegklevvkkkGkveelkekleekelegkvgigHtRWaTHGkpteeNaHPHvde.kgeiavvhNGiieNykelreelekkgvefkSdTDtEviahlieeelkeeedl 142
                 CGiv+++   ++  ++++l +gl  L  RG D aG+ +++ ++l+++k++G v+++ ++ + ++l+g++g+gH+R+ T G+ + + a P  ++  + i v hNG + N  el e++ +   + + d D+E++ + ++e+l++++++
  MMETSP1061-20121228|7687_1   2 CGIVALLLAdENawVNQLLFDGLTVLQHRGQDAAGMVTADRKRLHLRKDNGLVRDVFQQDNMTQLRGNIGLGHVRYPTAGSSSCAEAQPLYTNyPHGISVAHNGNLTNTDELYEQMLQIQRHVNTDSDSEILLNCFAESLNKHQRI 147
                 *****9765233225799***********************************************************************76651567*****************************************99977655 PP

>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.9   0.0   1.3e-15   4.3e-13       1     152 [.       2     204 ..       2     241 .. 0.93

  Alignments for each domain:
  == domain 1    score: 46.9 bits;  conditional E-value: 1.3e-15
   TIGR01536   1 CgiagivdlkakakeeeeaikemletlahRGPDaegvwkd........................ekeenailghrRLaiidlseg..aQPlsnek..evvivfnGEIYNheeLreeleekGyeFetksDtEViLaayeew........................g.eelverLeGmFAfalwdekkgelflaRDrlGikPLYyas 152
                 Cgi++++ ++++a  + + +   l +l+hRG Da g+                           + + n +lgh+R     +s+   aQPl+ +      + +nG + N++eL e++ +   + +t+sD+E++L+ + e                            +++++ +G +A  ++ +    l+ +RD+ Gi+PL  ++
  MMETSP1061-20121228|7687_1   2 CGIVALLLADENAWVN-QLLFDGLTVLQHRGQDAAGMVTAdrkrlhlrkdnglvrdvfqqdnmtQLRGNIGLGHVRYPTAGSSSCaeAQPLYTNYphGISVAHNGNLTNTDELYEQMLQIQRHVNTDSDSEILLNCFAESlnkhqrisfnnenkeqtiiddifnTcTDVMNQCKGGYATTYMIN-GVGLVGFRDPNGIRPLVIGC 204
                 9*****9998887775.677777999**********87779********************9965679************99998789*******99899****************99999*****************999**********************9569*************9998.788*************8766 PP

>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.063        22     202     228 ..     145     171 ..     129     174 .. 0.85
   2 !   24.6   0.0   6.5e-09   2.2e-06     192     245 ..     371     423 ..     299     432 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.063
   TIGR01251 202 tnllgdvegkdvvivDDiisTggTlvk 228
                 +++  + e+k+  i+DDi +T++ +++
  MMETSP1061-20121228|7687_1 145 QRISFNNENKEQTIIDDIFNTCTDVMN 171
                 566778899************998765 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 6.5e-09
   TIGR01251 192 RdskenevevtnllgdvegkdvvivDDiisTggTlvkaaelLkekGAkkvivaa 245
                 R+ k+   + + +  + +gk+v++vDD i  g+T  + +++++e+GAkkv+ + 
  MMETSP1061-20121228|7687_1 371 RK-KSVRLKLNTIKPEFAGKNVLLVDDSIVRGTTANEIVQMAREAGAKKVYFCS 423
                 44.4557888899999***********************************986 PP

>> TIGR00201  comF: comF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       1.5   5.2e+02     149     167 ..     150     168 ..     119     174 .. 0.71
   2 !   23.0   0.0   4.1e-08   1.4e-05     132     184 ..     368     420 ..     303     425 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.5
   TIGR00201 149 evqgrkivlvDDvvttGat 167
                 + + ++  ++DD+  t + 
  MMETSP1061-20121228|7687_1 150 NNENKEQTIIDDIFNTCTD 168
                 4567788899999988664 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 4.1e-08
   TIGR00201 132 akeRkknlenafklkvkevqgrkivlvDDvvttGatlaeiaklllklgaaevq 184
                 + +Rkk ++ ++++ ++e+ g+++ lvDD +  G+t +ei ++ ++ ga++v 
  MMETSP1061-20121228|7687_1 368 QAKRKKSVRLKLNTIKPEFAGKNVLLVDDSIVRGTTANEIVQMAREAGAKKVY 420
                 34566677778888889*********************************996 PP

>> TIGR03104  trio_amidotrans: asparagine synthase family amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.023       7.8       1      45 [.       1      45 [.       1      51 [. 0.89
   2 !   18.0   0.0   4.2e-07   0.00014      38     109 ..      65     138 ..      59     145 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.023
   TIGR03104  1 mcGiaGelrfdgraadvaavermaaelakrGPdaeGvfaqgkval 45
                mcGi   l  d++a   + +     +l++rG da+G++++++ +l
  MMETSP1061-20121228|7687_1  1 MCGIVALLLADENAWVNQLLFDGLTVLQHRGQDAAGMVTADRKRL 45
                9**********99999999999***************98876555 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 4.2e-07
   TIGR03104  38 faqgkvalGhrrlkiidlseas.qqPmvda.elglalvfnGaiynykelreelealGyrffsegdtevilkayh 109
                   +g+++lGh r      s ++ +qP++ +   g+++++nG + n  el e++ +   +  +++d+e++l+++ 
  MMETSP1061-20121228|7687_1  65 QLRGNIGLGHVRYPTAGSSSCAeAQPLYTNyPHGISVAHNGNLTNTDELYEQMLQIQRHVNTDSDSEILLNCFA 138
                 5689*********99998876537***976268*************************************9986 PP

>> TIGR03108  eps_aminotran_1: exosortase A system-associated amidotransferase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.029        10       1      41 [.       1      40 [.       1      49 [. 0.83
   2 !   16.9   0.0   1.2e-06   0.00041      39     109 ..      65     138 ..      40     144 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.029
   TIGR03108  1 mcGiagifdlegkreidrellkrmnealahrGPdeegvhve 41
                mcGi++++  +++  +++ l   +  +l+hrG d  g+ ++
  MMETSP1061-20121228|7687_1  1 MCGIVALLLADENAWVNQLLFDGL-TVLQHRGQDAAGMVTA 40
                9*******9999999887766666.5889******999765 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.2e-06
   TIGR03108  39 hvepGiglghrrlsiidlagg..kqPla.nedgsvvvvfnGeiynfkelvkelealGhqfrtksdtevivhaWe 109
                  ++  iglgh r      ++   +qPl+ n  + + v +nG++ n  el +++ ++  + +t+sd e++++ + 
  MMETSP1061-20121228|7687_1  65 QLRGNIGLGHVRYPTAGSSSCaeAQPLYtNYPHGISVAHNGNLTNTDELYEQMLQIQRHVNTDSDSEILLNCFA 138
                 456679*******99987764227**97366799**********************************998765 PP

>> TIGR01743  purR_Bsub: pur operon repressor PurR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   5.3e-06    0.0018      90     222 ..     289     416 ..     247     422 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.3e-06
   TIGR01743  90 seserilPGgflyltdllskPsilskiakilasvfaekeidavvtvetkGvPlayavakvlnvslvivrkdskvteGstvsinyvsGssdriqkmslakrslk...kGskvllvddflkaGGtvkGlielleefda 222
                 + ++ i+ G  +y + l +   + +ki +i      +++id+v+ +       a+++a++l+v++    ++  v +  +     + G  +r +++ l   ++k   +G +vllvdd +  G t++ ++++ +e  a
  MMETSP1061-20121228|7687_1 289 ARPDSIIDGVSVYESRLKMGEKLADKIKRI----HPDHDIDVVIPIPETARTTALQTAHFLGVPF----REGYVKNRYIARTFIMPGQAKRKKSVRLKLNTIKpefAGKNVLLVDDSIVRGTTANEIVQMAREAGA 416
                 567888888888888887777777777665....679*********99999*************9....56666666666666678999999999999999986667**********************9999766 PP

>> TIGR01203  HGPRTase: hypoxanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         3     1e+03      81      99 ..     149     167 ..     144     171 .. 0.78
   2 !   14.3   0.0   1.6e-05    0.0054      68     120 ..     370     423 ..     354     426 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3
   TIGR01203  81 edikdkdvLlveDivdtgl 99 
                  + ++k+  +++Di +t +
  MMETSP1061-20121228|7687_1 149 FNNENKEQTIIDDIFNTCT 167
                 5667899999****99865 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 1.6e-05
   TIGR01203  68 essgevkilkd.ldedikdkdvLlveDivdtgltlkellellkarkpkslkivt 120
                 + +++v++  + ++ +  +k+vLlv+D +  g+t +e++++ ++ ++k++  ++
  MMETSP1061-20121228|7687_1 370 KRKKSVRLKLNtIKPEFAGKNVLLVDDSIVRGTTANEIVQMAREAGAKKVYFCS 423
                 556667775441666778******************************998886 PP

>> TIGR01090  apt: adenine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   7.5e-05     0.026      95     143 ..     371     422 ..     310     425 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 7.5e-05
   TIGR01090  95 gkdkleihkdalk...kgkrvlivDDllAtgGtveAaleLikklgaevveaa 143
                 +k+++ ++ +++k   +gk+vl+vDD +  g t++ ++++ ++ ga+ v ++
  MMETSP1061-20121228|7687_1 371 RKKSVRLKLNTIKpefAGKNVLLVDDSIVRGTTANEIVQMAREAGAKKVYFC 422
                 577889999999988889****************************998877 PP

>> TIGR01367  pyrE_Therm: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.7   1.6e+03      43      61 ..     306     324 ..     302     330 .. 0.72
   2 ?   11.3   0.0   0.00012     0.042      73     141 ..     352     424 ..     340     432 .. 0.77

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 4.7
   TIGR01367  43 klgeelakkilkaklevdv 61 
                 k+ge+la ki+  + + d+
  MMETSP1061-20121228|7687_1 306 KMGEKLADKIKRIHPDHDI 324
                 7899999999988665554 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00012
   TIGR01367  73 gyevaralsvrsifaerengemklrrgf.evkp...GekvvvveDvvttGgsakeaikiieelGgqvvglaai 141
                 gy+  r++   +i   +  ++  +r  + ++kp   G++v++v+D +  G +a e +++ +e+G++ v +++ 
  MMETSP1061-20121228|7687_1 352 GYVKNRYIARTFIMPGQAKRKKSVRLKLnTIKPefaGKNVLLVDDSIVRGTTANEIVQMAREAGAKKVYFCSA 424
                 6777777777777765554333333332134444449*******************************99985 PP

>> TIGR01744  XPRTase: xanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00013     0.045      41     148 ..     314     419 ..     295     422 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00013
   TIGR01744  41 efarrfadkgitkiltieasGiaPaimtalkldvPvvfakkkkpltltdqlltasvvsftkskestv.ivskeflsdedrvliiddflanGdaarglvdivkqagakiv 148
                 +  r   d+ i  ++ i  +  + a+ ta  l+vP       k + +   ++      + ks   ++ ++  ef ++  +vl++dd +  G +a+ +v+++++agak v
  MMETSP1061-20121228|7687_1 314 KIKRIHPDHDIDVVIPIPETARTTALQTAHFLGVPFREGY-VKNRYIARTFIMPGQAKRKKSVRLKLnTIKPEFAGK--NVLLVDDSIVRGTTANEIVQMAREAGAKKV 419
                 5555555555556666655666666666666666653222.222233333344444444455444442345555554..69*************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.70
# Mc/sec: 1069.11
//
Query:       MMETSP1061-20121228|7689_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 2195.82
//
Query:       MMETSP1061-20121228|7694_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1737.86
//
Query:       MMETSP1061-20121228|7697_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 326.83
//
Query:       MMETSP1061-20121228|7700_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.33
# Mc/sec: 207.98
//
Query:       MMETSP1061-20121228|7698_1  [L=1127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 3718.79
//
Query:       MMETSP1061-20121228|7701_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-83  277.8   1.2    1.2e-81  271.8   0.9    2.1  1  TIGR00798 mtc: tricarboxylate carrier


Domain annotation for each model (and alignments):
>> TIGR00798  mtc: tricarboxylate carrier
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.8   0.9     3e-85   1.2e-81       2     317 .]      31     378 .]      30     378 .] 0.88

  Alignments for each domain:
  == domain 1    score: 271.8 bits;  conditional E-value: 3e-85
   TIGR00798   2 kfdiskprydqstflgrarhflevtdpltllssekklekareiledykkgk...........vsnltseelwkakklvdsalHPdTgekvlllgRmsaqvpanlvvtggmlllykslpavvfwqWlNQSfNavvNyaNrsgdkkltseellksYvaAvtaalavalglnklvkkakslsp....ligrlvPfaAvalAnaiNiplmRknElkeGievvde.......dge...........tvgkSkkaaakaiaqvvlsRvllavPlmvlpplilnrlertallkkrpkvilvqtlligltllvalPlalalfpqksaieveklepslqkkkkkskqpvkkvyynkGl 317
                  f+++  rydqst++gr r +l+v+dp+tll+s+++l++a ++l+++ + +           v++  +e+lw+akk++d+++HPdT+e +  ++Rms  vp n  v++g ++   s+pa+ f++W+NQ  Na+vN+ Nr+++++l+++ +l+ Y+ Avt+++++++gl++ + ++k l++     ++r+v ++A+ +A+aiN++lmR+nEl++Gi+v+ e       + +           +vg S+ aa+ka++++ +sR++l++P++++ppl l+ l  ++  ++r  +++v+++ + l++ ++lP ++alfpq+  i  + le +++++++++++pv + +ynkGl
  MMETSP1061-20121228|7701_1  31 PFSLKGDRYDQSTYYGRFRKMLDVVDPRTLLTSKQELDDAVNLLKEFEDHQtlmhsgtrnvvVKQFDNEKLWQAKKIKDAIVHPDTNEIIPQPFRMSGYVPYNGPVCVGAIM-ATSMPAIFFFHWMNQTQNALVNFFNRNATQPLNTSAVLQGYMGAVTGSIGMSMGLKAAIDRSKRLTAvqkvSAQRFVALPAIITAAAINVFLMRRNELTTGIDVYYEpsvstntNTStvtiqeaaapvVVGSSQLAAKKALSEMIISRMVLPLPTFLIPPLALSLLDPIVRKNRRLFTFPVNVTFVMLGFGFGLPATIALFPQNGIIYAKDLEERFHHLRDEQGNPVTVFRYNKGL 378
                 68999*****************************************987552222221222133356789*********************************988877654.5799************************************************************999888779******************************9744222221122222222222222689***************************************99999999*********************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 1995.68
//
Query:       MMETSP1061-20121228|7702_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.25
# Mc/sec: 2476.12
//
Query:       MMETSP1061-20121228|7705_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1264.90
//
Query:       MMETSP1061-20121228|7707_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.8   0.0      0.019   11.7   0.0    1.1  1  TIGR02351 thiH: thiazole biosynthesis protein ThiH


Domain annotation for each model (and alignments):
>> TIGR02351  thiH: thiazole biosynthesis protein ThiH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   4.7e-06     0.019     166     187 ..      25      46 ..      17      64 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.7e-06
   TIGR02351 166 kklkeaGldavlvyqetYnekk 187
                 + l+e Gld v+ +qe Yn+++
  MMETSP1061-20121228|7707_1  25 EALEEIGLDVVMAFQEAYNPDH 46 
                 5799***************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 560.95
//
Query:       MMETSP1061-20121228|7714_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 493.22
//
Query:       MMETSP1061-20121228|7706_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-15   53.7   0.1    6.8e-15   53.1   0.1    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.1e-08   31.7   0.8      2e-08   30.9   0.5    1.4  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1   0.1   3.3e-18   6.8e-15      10      71 ..      95     155 ..      80     188 .. 0.81

  Alignments for each domain:
  == domain 1    score: 53.1 bits;  conditional E-value: 3.3e-18
   TIGR02349  10 kdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagle 71 
                  + +++ i k Yr l++++HPD++k ++ea+e+f++i++AyevL+ +e r++YD +  ++  
  MMETSP1061-20121228|7706_1  95 EKPTQKMITKRYRGLSRHWHPDKSK-HPEAKERFQKIARAYEVLTSSETRKEYDALRYDQNA 155
                 4557899******************.****************************86655443 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.5   9.9e-12     2e-08      15      69 ..      98     152 ..      78     162 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 9.9e-12
   TIGR03835  15 deqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhD 69 
                  ++ i k +r L++ +hPD+ k ++a++ f+ i  a++vL+  + r++yD   +D
  MMETSP1061-20121228|7706_1  98 TQKMITKRYRGLSRHWHPDKSKHPEAKERFQKIARAYEVLTSSETRKEYDALRYD 152
                 466799********************************************87776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1890.27
//
Query:       MMETSP1061-20121228|7709_1  [L=1362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.15s 00:00:00.73 Elapsed: 00:00:00.51
# Mc/sec: 3524.89
//
Query:       MMETSP1061-20121228|7716_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       504  (0.122867); expected 82.0 (0.02)
Passed bias filter:                      258  (0.0628961); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 503.21
//
Query:       MMETSP1061-20121228|7717_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0066   14.6   0.0      0.012   13.8   0.0    1.3  1  TIGR02464 ribofla_fusion: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02464  ribofla_fusion: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.8e-06     0.012      86     137 ..     227     277 ..     216     283 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.8e-06
   TIGR02464  86 eavlaKFstsedlrelLlstagkklVEasplDkiWGiGldkkdekiedeskG 137
                  a+l+KF +++d r++L++++++ l  +s++D++   G  ++++  +++++G
  MMETSP1061-20121228|7717_1 227 TASLDKFGAEKDARTFLYEDHENSLLADSSFDAVD-RGITTTARTERKNRRG 277
                 6899****************************983.3444443334444455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1557.47
//
Query:       MMETSP1061-20121228|7722_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 798.22
//
Query:       MMETSP1061-20121228|7720_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 2788.80
//
Query:       MMETSP1061-20121228|7715_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1369.96
//
Query:       MMETSP1061-20121228|7721_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-18   63.4   0.3    2.1e-10   38.1   0.1    2.3  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    2.2e-10   38.0   0.2    4.5e-07   27.1   0.0    2.4  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    9.8e-08   29.0   0.2    8.8e-05   19.3   0.0    2.1  2  TIGR01373 soxB: sarcosine oxidase, beta subunit family
    5.4e-05   19.9   0.6     0.0039   13.8   0.2    2.2  2  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
      0.001   15.8   0.1     0.0015   15.2   0.1    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
     0.0038   13.7   0.2     0.0058   13.1   0.2    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
     0.0045   14.1   0.2     0.0079   13.3   0.1    1.3  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0066   13.4   0.1       0.01   12.8   0.0    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
  ------ inclusion threshold ------
      0.032   11.7   1.3       0.05   11.1   0.9    1.3  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family


Domain annotation for each model (and alignments):
>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.1   4.6e-13   2.1e-10       1     109 [.      82     187 ..      82     259 .. 0.85
   2 !   23.5   0.0   1.2e-08   5.6e-06     304     349 ..     387     434 ..     377     436 .. 0.88

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 4.6e-13
   TIGR02352   1 vlviGgGviGlsvAveLakr.ghkvtllekd.evgsgAskaAaGmLapvaEveiaeeallrLaleSlrlypelleelkeltgldveykeeGilvvaadeddaeklreladl 109
                 v+++G+Gv+G s+A++Lak+ g  +tl+++  +++ +As+ A+G La    ++ ++ al +L ++S +l +e++ el      +++y++ + +++++ ++++ +  + ++l
  MMETSP1061-20121228|7721_1  82 VVIAGAGVVGVSTAYYLAKQfGVATTLIDPTgTIAPAASGKAGGFLAL--NWNDHSPALGPLTRRSFALHQEIADEL---GADNIQYRRLECVAIPVGDNNVLRRPSGRKL 187
                 789**************9866**********9**************96..56667999****************877...6678999999999999988887766555554 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 1.2e-08
   TIGR02352 304 PatpDnlPllge..heederlliatGhyRnGiLLaPataevvadliek 349
                 P t D++P++ge  ++e++++++++Gh   GiL+ Pa++e++a++i +
  MMETSP1061-20121228|7721_1 387 PSTVDGVPMMGEvpGAEHPGTYVCAGHTCWGILMGPASGEAMAHEIVT 434
                 99*********822467889*************************986 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     1e-09   4.5e-07       1      82 [.      81     163 ..      81     181 .. 0.91
   2 !    8.7   0.0   0.00038      0.17     343     378 ..     403     438 ..     388     450 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1e-09
   TIGR03197   1 kvavIGaGiAgaalalsLarr.GvqvtllekdeklaqgASgnrqGalypllsaddnalsrfllaaflyarrlleqlaeagvef 82 
                 +v++ GaG+ g+++a+ La++ Gv  tl++   ++a  ASg + G l    +++  al  +++++f   ++  ++l  +++++
  MMETSP1061-20121228|7721_1  81 HVVIAGAGVVGVSTAYYLAKQfGVATTLIDPTGTIAPAASGKAGGFLALNWNDHSPALGPLTRRSFALHQEIADELGADNIQY 163
                 799****************988********************************************99999988886666655 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00038
   TIGR03197 343 vlpgLYvllglGSRGllsapLaaelLaaqilgeplp 378
                  +pg Yv++g+   G+l+ p ++e++a++i    +p
  MMETSP1061-20121228|7721_1 403 EHPGTYVCAGHTCWGILMGPASGEAMAHEIVTGRCP 438
                 699***************************988877 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.9e-07   8.8e-05      27      61 ..      76     110 ..      68     179 .. 0.83
   2 !    7.7   0.0   0.00063      0.29     342     399 ..     389     450 ..     382     455 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.9e-07
   TIGR01373  27 pkpeydviivGgGGhGlatayylakehGitnvavl 61 
                   p+  v+i G+G  G++tayylak++G++   + 
  MMETSP1061-20121228|7721_1  76 SSPVKHVVIAGAGVVGVSTAYYLAKQFGVATTLID 110
                 567778**********************9976655 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00063
   TIGR01373 342 spdaspiiaktp...ldnlylncGwgtGGfkatpasGtvfaallakdephdla.apftldrf 399
                 ++d+ p++++ p    ++ y+ +G +  G    pasG  +a+ + ++   +++ + f+ +rf
  MMETSP1061-20121228|7721_1 389 TVDGVPMMGEVPgaeHPGTYVCAGHTCWGILMGPASGEAMAHEIVTGRCPHVNlKLFSPQRF 450
                 7899999999884445899**************************99866655255777776 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.2   8.6e-06    0.0039       3      29 ..      82     109 ..      81     115 .. 0.83
   2 !    4.1   0.0    0.0077       3.5     332     376 ..     406     451 ..     345     455 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.6e-06
   TIGR01377   3 vivvGaGvmGsaaayqLakr.gkkvLLl 29 
                 v++ GaGv G+++ay+Lak+ g+ + L+
  MMETSP1061-20121228|7721_1  82 VVIAGAGVVGVSTAYYLAKQfGVATTLI 109
                 7889***************945566555 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0077
   TIGR01377 332 nvvigaGfsGhGfklapvvGkiLae.lamkleaeydlaafslrrfe 376
                    + aG +  G  + p+ G+ +a+ + +   ++++l+ fs +rf 
  MMETSP1061-20121228|7721_1 406 GTYVCAGHTCWGILMGPASGEAMAHeIVTGRCPHVNLKLFSPQRFG 451
                 55699****************9986155555679**********95 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   3.3e-06    0.0015       1      39 [.      81     119 ..      81     152 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.3e-06
   TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalveakaaekaks 39 
                 ++vI+G+G+vG ++A  La++ ++ ++l++++ + ++++
  MMETSP1061-20121228|7721_1  81 HVVIAGAGVVGVSTAYYLAKQFGVATTLIDPTGTIAPAA 119
                 69*****************999********987766544 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.2   1.3e-05    0.0058       3      24 ..      80     101 ..      78     115 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.3e-05
   TIGR00562   3 kkvvvvGgGisGLciayaleke 24 
                 k+vv+ G+G+ G+++ay+l+k+
  MMETSP1061-20121228|7721_1  80 KHVVIAGAGVVGVSTAYYLAKQ 101
                 89******************98 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   1.7e-05    0.0079      21      50 ..      79     109 ..      70     129 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-05
   TIGR00292  21 esDviivGaGpsGLtaayylakeg.lkvvvl 50 
                 +  v+i+GaG  G+++ayylak+  + + ++
  MMETSP1061-20121228|7721_1  79 VKHVVIAGAGVVGVSTAYYLAKQFgVATTLI 109
                 568******************9843666665 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.2e-05      0.01       2      74 ..      81     156 ..      80     165 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.2e-05
   TIGR03364   2 dvvvvGaGivGlahAlaaarr.GlkVtvierssr.aaGAsvrNFGqvvvtgqaageale.larrsreiwlelaeka 74 
                  vv+ GaG+vG+++A+  a++ G+  t+i+ + + a  As +  G+  +   ++ +al  l+rrs ++++e+a++ 
  MMETSP1061-20121228|7721_1  81 HVVIAGAGVVGVSTAYYLAKQfGVATTLIDPTGTiAPAASGKAGGFLALNWNDHSPALGpLTRRSFALHQEIADEL 156
                 69*************9866555*******98876245667777777777777777777667788888877777765 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.9   0.00011      0.05       3      31 ..      82     111 ..      80     123 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
   TIGR02032   3 vvvvGaGpaGssaAlrlakk.GlrVlllek 31 
                 vv+ GaG  G s+A++lak+ G+ + l++ 
  MMETSP1061-20121228|7721_1  82 VVIAGAGVVGVSTAYYLAKQfGVATTLIDP 111
                 9***************99875888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 1863.85
//
Query:       MMETSP1061-20121228|7725_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.18
# Mc/sec: 975.25
//
Query:       MMETSP1061-20121228|7723_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.5   0.4       0.11   10.3   0.0    2.3  3  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB


Domain annotation for each model (and alignments):
>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.7e-05      0.11      28      75 ..     267     320 ..     255     339 .. 0.85
   2 ?   -3.3   0.0      0.39   1.6e+03     118     146 ..     352     384 ..     348     396 .. 0.66
   3 ?   -1.8   0.1      0.14   5.6e+02      47      79 ..     494     524 ..     476     536 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.7e-05
   TIGR01488  28 devkeltrlvlegrisfedrlgrrlkllersl......leelakeflakevair 75 
                 ++  ++ +++++g  sf d+l++r ++++rs+      +++++ke+++k v++ 
  MMETSP1061-20121228|7723_1 267 ASAVAVDFWTPQGFDSFADWLRERSAQWHRSYswnqrkRQRIEKECFEKVVHLP 320
                 4567899****************************999999999*****99875 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.39
   TIGR01488 118 nelelddnGlltgriege....vnpsgeeKgkv 146
                 n+  +++n+ +tg+  +     +npsg +  ++
  MMETSP1061-20121228|7723_1 352 NDNNNNNNNNYTGPDTDHpsepTNPSGTCTARE 384
                 666677777999977664566666666665555 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.14
   TIGR01488  47 rlgrrlkllerslleelakeflakevairpgar 79 
                 +++  l+++ +  ++e ++e+++++ a rp ++
  MMETSP1061-20121228|7723_1 494 QEMALLDEILD--RKEQEREEVRRKRAERPPIE 524
                 22222222222..34444456666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.11s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 2629.36
//
Query:       MMETSP1061-20121228|7730_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0078   11.9   0.0     0.0078   11.9   0.0    1.1  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   1.9e-06    0.0078     428     464 ..      68     105 ..      39     106 .] 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.9e-06
   TIGR01299 428 lyqvwltfl.rcfsyevreitlkltivwftlsfsyygl 464
                 + + wl+   + ++++++++t  l  vwf+lsf+ ygl
  MMETSP1061-20121228|7730_1  68 AVSDWLSSTsKLYAPNLKQTTWPLQLVWFSLSFGSYGL 105
                 4555665441578999*********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 699.54
//
Query:       MMETSP1061-20121228|7732_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 553.10
//
Query:       MMETSP1061-20121228|7733_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1328.99
//
Query:       MMETSP1061-20121228|7731_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-28   96.2   0.0    3.4e-14   50.4   0.0    2.1  2  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   8.3e-18   3.4e-14       1     139 [.     106     251 ..     106     259 .. 0.82
   2 !   43.9   0.0   8.4e-16   3.4e-12     129     318 ..     268     472 ..     260     473 .. 0.88

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 8.3e-18
   TIGR01293   1 lkyrnlgksglrvsclglgt..wvvfgsqisd.eqaedllklay.esginlfdiaevy.........aagkaetelgkilkkkgwrrssyvittkifwggkaeeerglsrkhiieglkaslerlqleyvdivlanradpsspmeevvramty 139
                 +k+r lg s + vs lglgt  wv    +  d +   +++  a+ ++g+nl+d+ae y         + g +e+++g+ +k +   rs +vi+tki  g ++ + r +      +  ++sl+rlq +yvd+ l + ++  sp  +  ++++y
  MMETSP1061-20121228|7731_1 106 MKHRRLGNSDIFVSELGLGTqrWVSTDFNAPDkDLCYQFMDEAIlKRGVNLIDTAEQYpipsggggaSEGDTERVIGEWMKDRKVARSDVVIATKITGG-TNITPRNI-----KKDCEGSLKRLQTDYVDVYLCHWPQRYSPQSNWGQSLSY 251
                 899****************9667766656655367889998886489*********9955554444345789************************755.77777765.....455789*****************9999998887777777 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 8.4e-16
   TIGR01293 129 pmeevvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfqrekvelqlpelyh..kigvgavtwsplalalvdskyddklpkaskatlkgyqwlk..............ekvrseegrrqqarlkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqvllklsssvvleldai 318
                  +e++  +m  +++ g    wg +   a  +     +a+    +pp + q ++ ++ r+  e  + e        vg ++++ la ++ ++ky d +p+a   t ++                   +          q+ +++   +a+    +l++l++ ws +++ +++ llg +s +ql+e+l+ l  + +l ++v+ e+d+i
  MMETSP1061-20121228|7731_1 268 SFEDLCLSMEELVQAGKIRGWGLCNDNAYGLTPCTRTAKALGTTPPCTMQGDFSILDRKSEENGVAEAASpyNENVGFMAYNALAGGMLTGKYMD-VPSAFDDTNRARALASldkprgrmdtrgwgGTLIRYRTEAAQDAIREYDKIAKANKMSLTELSLRWSKQRDLITTTLLGHTSMDQLKETLDILTTKENLPPDVMWEIDRI 472
                 467888899999**********************************************99999998875411458******************86.8888877766555544668999999999975555556778899*****************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2419.80
//
Query:       MMETSP1061-20121228|7735_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2441.80
//
Query:       MMETSP1061-20121228|7737_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1950.51
//
Query:       MMETSP1061-20121228|7738_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0079   12.9   0.1        0.2    8.2   0.0    2.1  2  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.5   0.0    0.0028        11     108     134 ..     235     269 ..     168     276 .. 0.70
   2 !    8.2   0.0     5e-05       0.2     205     244 ..     375     414 ..     366     460 .. 0.72

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0028
   TIGR02160 108 r........akhyvavaaGsGitPilaivktvlaa 134
                          +++ v+va+G G+ P +   +  laa
  MMETSP1061-20121228|7738_1 235 AsvsedrdaTQRVVMVATGVGVGPCVGASELLLAA 269
                 044444444799*************9988888776 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 5e-05
   TIGR02160 205 devdeaflcGPaalvddaedalkalGvdsekvhlelfttd 244
                  +  ++++ G  +lv++ ++ l+ +Gv++++v +e +  +
  MMETSP1061-20121228|7738_1 375 TRGTHYHIIGNGQLVNEWKEGLERAGVPADRVTVEAYFNH 414
                 5567899****************************87652 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1988.35
//
Query:       MMETSP1061-20121228|7736_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 437.96
//
Query:       MMETSP1061-20121228|7741_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   16.5  11.5      0.003   15.6   8.0    1.6  1  TIGR03602 streptolysinS: bacteriocin protoxin, streptolysin S family


Domain annotation for each model (and alignments):
>> TIGR03602  streptolysinS: bacteriocin protoxin, streptolysin S family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   8.0   7.3e-07     0.003      25      47 ..      56      78 ..      34      85 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7.3e-07
   TIGR03602 25 sCCCCsttCCvsvavGsGsastg 47
                 CCC +++CC+    G+G ++t 
  MMETSP1061-20121228|7741_1 56 HCCCSCCCCCYVYPHGTGGTDTD 78
                58888899999889999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       621  (0.15139); expected 82.0 (0.02)
Passed bias filter:                      236  (0.0575329); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 473.34
//
Query:       MMETSP1061-20121228|7743_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.24
# Mc/sec: 230.98
//
Query:       MMETSP1061-20121228|7744_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|7742_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       334  (0.0814237); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 1598.53
//
Query:       MMETSP1061-20121228|7746_1  [L=1293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.45
# Mc/sec: 3792.49
//
Query:       MMETSP1061-20121228|7745_1  [L=977]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 3306.50
//
Query:       MMETSP1061-20121228|7750_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1049.31
//
Query:       MMETSP1061-20121228|7749_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2150.32
//
Query:       MMETSP1061-20121228|7752_1  [L=1470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       297  (0.0724037); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.84u 0.15s 00:00:00.99 Elapsed: 00:00:00.74
# Mc/sec: 2621.95
//
Query:       MMETSP1061-20121228|7753_1  [L=911]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (911 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.31
# Mc/sec: 3878.78
//
Query:       MMETSP1061-20121228|7755_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 472.38
//
Query:       MMETSP1061-20121228|7756_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.37
# Mc/sec: 542.23
//
Query:       MMETSP1061-20121228|7754_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 2315.81
//
Query:       MMETSP1061-20121228|7757_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.34
# Mc/sec: 1758.56
//
Query:       MMETSP1061-20121228|7759_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1145.91
//
Query:       MMETSP1061-20121228|7758_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 3461.52
//
Query:       MMETSP1061-20121228|7765_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 623.28
//
Query:       MMETSP1061-20121228|7766_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 630.61
//
Query:       MMETSP1061-20121228|7760_1  [L=1885]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1885 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.67u 0.12s 00:00:00.79 Elapsed: 00:00:00.47
# Mc/sec: 5293.61
//
Query:       MMETSP1061-20121228|7767_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         5  (0.00121892); expected 82.0 (0.02)
Passed bias filter:                        5  (0.00121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.13s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 410.63
//
Query:       MMETSP1061-20121228|7770_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.20
# Mc/sec: 2276.81
//
Query:       MMETSP1061-20121228|7768_1  [L=815]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-07   28.0   0.3    6.5e-05   19.2   0.0    2.3  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    7.7e-07   25.0   0.0    3.3e-06   22.9   0.0    1.8  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
     0.0013   14.8   0.0       0.01   11.9   0.0    1.9  2  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
  ------ inclusion threshold ------
        4.4    4.3  10.7      0.034   11.2   0.8    2.3  3  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   6.4e-08   6.5e-05      35     104 ..     275     355 ..     261     394 .. 0.75
   2 !    6.5   0.1   0.00042      0.43     342     380 ..     743     781 ..     710     787 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 6.4e-08
   TIGR03817  35 eapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.......p.....ratalylaPtkalaadqlravkel 104
                 ++p   q +      +G ++v+ + t sGk+layllP+ +al +d                 + l+Pt+ laa q++ v ++
  MMETSP1061-20121228|7768_1 275 DTPTPIQRKSFRKLSKGLSAVLHAETGSGKTLAYLLPITEALWRDeldesnnNdadedLRYGMILTPTRELAA-QVAGVASV 355
                 556666666667778999*************************996666555054444566788*******98.55555554 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00042
   TIGR03817 342 GvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvv 380
                 G+ ++Gld+vv+ G       +   aGr+Gr+g+   vv
  MMETSP1061-20121228|7768_1 743 GMHLAGLDTVVVVGRASGPDEYIHIAGRTGRAGKPGRVV 781
                 899*************999**************977666 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   3.2e-09   3.3e-06      13      79 ..     276     350 ..     270     357 .. 0.80
   2 ?   -1.1   0.0      0.06        62     132     156 ..     433     457 ..     430     471 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 3.2e-09
   TIGR04121  13 eprafQkevleaaeegesglliapTGaGKTlavflpsliela.......akekpkkglkv.lyitPLkaLakdie 79 
                 +p++ Q++ ++++++g s++l+a TG+GKTla  lp+  +l        ++++  + l+  + +tP + La++++
  MMETSP1061-20121228|7768_1 276 TPTPIQRKSFRKLSKGLSAVLHAETGSGKTLAYLLPITEALWrdeldesNNNDADEDLRYgMILTPTRELAAQVA 350
                 68899******************************9988777777765434444466664377899999998876 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.06
   TIGR04121 132 kdaeklfkdlravvvDElHeLlgsk 156
                 + a++l+++ r +v+DE+  Ll+ k
  MMETSP1061-20121228|7768_1 433 PAAKELLSRTRWIVLDEVDRLLSVK 457
                 678999***************8755 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0     1e-05      0.01     265     286 ..     292     313 ..     282     319 .. 0.84
   2 ?    0.4   0.0      0.03        31     434     469 ..     435     470 ..     430     485 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1e-05
   TIGR01407 265 ekslIeAatGtGKtlgYLLpal 286
                  ++++ A tG+GKtl+YLLp+ 
  MMETSP1061-20121228|7768_1 292 LSAVLHAETGSGKTLAYLLPIT 313
                 567889**************96 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.03
   TIGR01407 434 kpelllesklliiDEahklediaenalqeeldiasl 469
                  +ell   +++++DE+ +l+ +  ++   + + +++
  MMETSP1061-20121228|7768_1 435 AKELLSRTRWIVLDEVDRLLSVKTKKGLSTAQRQQM 470
                 46999***************9988877666665555 PP

>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.8   3.4e-05     0.034     207     302 ..      93     190 ..      77     208 .. 0.77
   2 ?   -1.7   0.0      0.28   2.9e+02      64     117 ..     429     486 ..     394     520 .. 0.57
   3 ?   -4.4   0.4       1.8   1.8e+03     329     350 ..     628     649 ..     616     659 .. 0.47

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.4e-05
   TIGR00599 207 spsagasktkPiesk.dssksssrlsf.kt.vdksstgetsrvdkyldelmskereRLPklnysllkdsklrkkLselGlstnGsrqllqkRhkewvtL 302
                 +ps+ +s+++P++    s++ s+r  + +t ++  + +++ r+ +++ +  + +r       y ++   +l+  L++ Gl+t+G +  l kR +e++ L
  MMETSP1061-20121228|7768_1  93 LPSS-SSSSSPTQLFvASEEISAREALeRTrKQLEQMQQKQRSSRSIGNGSLDPRIEQQTREYLSFPANALKLELKKNGLPTKGRKPDLAKRLAEFEYL 190
                 4444.666677764312344445555424555667788889999999999999999999999*********************************9987 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.28
   TIGR00599  64 PlCraedqEskLRknfvveEivesfknlR.ksllellrvekttkv...esedlaapes 117
                 P+ +   +E++ R  ++v + v+   +++ k  l  ++ ++ +k+   + ++ ++p++
  MMETSP1061-20121228|7768_1 429 PTRKPAAKELLSRTRWIVLDEVDRLLSVKtKKGLSTAQRQQMAKKnafQYGEAQSPSQ 486
                 4445555566666666655555544443311222222222222210113333333333 PP

  == domain 3    score: -4.4 bits;  conditional E-value: 1.8
   TIGR00599 329 qgktpqasgnkggisklmlvks 350
                 +++ +++ +++  ++ lm++++
  MMETSP1061-20121228|7768_1 628 NNNKNTNQSGTKAQKILMVLTK 649
                 2223333333334444454444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.30
# Mc/sec: 3585.70
//
Query:       MMETSP1061-20121228|7775_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 508.16
//
Query:       MMETSP1061-20121228|7773_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-16   57.8   0.0    3.7e-16   56.9   0.0    1.5  1  TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases


Domain annotation for each model (and alignments):
>> TIGR00530  AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0     9e-20   3.7e-16       6     129 ..     123     256 ..     120     257 .. 0.77

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 9e-20
   TIGR00530   6 vvgkenlpkkk....avlvvanHqsnlDiltlsaafapplvfiAKkeLkeipflgilllltgavfidRen.kraiasll.......kaakkllkegravgvFpeGtrskgrkilefKkGalkiAikakvpilPvvl 129
                 + g+enlp+++    a ++vanH+s +D  ++ ++++++  +i K ++++ p +g++  l   + idR + k++ + ++        +    ++eg  + +Fp Gtr  g++ l+fK Ga+++A +    ++P+++
  MMETSP1061-20121228|7773_1 123 MKGTENLPSNEpgspAPVYVANHASQIDSAVV-YYVQRQWRWIMKSSIMYLPGVGQITYLGDHIWIDRVKrKKKSKDSItgarnlyVKSDASIQEGIPMFFFPQGTRRMGER-LPFKDGAFNVATNNDSVLVPISI 256
                 556666665441111569**********8765.77899******************************885444443330110111445567899************99987.79******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|7774_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-46  155.8   0.0    3.1e-46  155.5   0.0    1.1  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    8.1e-12   42.9   0.0    1.2e-11   42.4   0.0    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    0.00024   18.7   0.0    0.00035   18.2   0.0    1.2  1  TIGR03690 20S_bact_beta: proteasome, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.5   0.0   2.3e-49   3.1e-46       2     215 ..       7     228 ..       6     242 .. 0.89

  Alignments for each domain:
  == domain 1    score: 155.5 bits;  conditional E-value: 2.3e-49
   TIGR03633   2 aYDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklleae..siekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk..earlfetdPsGalleykavaiGagrekvlelleke..ykedlsldeaielalkalakaleeelkae..evevavveveek 215
                 +YD +   fsPdGr++qveYa +av  +   +Gik+++gvvl   k i++k++ a+  s ++i++ D hvg+a++G++ Darvl++r   ea     +Y+++i  evla +++++   +t +G  rPfG a+++aG d +  e+ l + +P Ga ++y  va G+g++++++ lek   +k  + ++ea++  l++l+   +e+ +a+  e+ev+ + + ++
  MMETSP1061-20121228|7774_1   7 GYDLSSSTFSPDGRIFQVEYATKAVENAGPVIGIKCSNGVVLGCAKPINHKMVVATtgSYKRIHTCDTHVGCASTGFLPDARVLVQRTVEEAADWEDQYGSKIPPEVLADRLGQYAHYFTLHGALRPFGAAVVLAGYDPDtkECSLQMLEPNGAPYKYYGVATGKGKQAAKTELEKLnlHKTPIPVEEAVKQILRILHLLHQEQKDAKpiEIEVSWICEATN 228
                 8**************************************************997643399****************************************************************************986544899******************************853378899**********9999988765555511666676665555 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   8.5e-15   1.2e-11       4     159 ..      37     201 ..      35     213 .. 0.88

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 8.5e-15
   TIGR03634   4 tvGikvkdgvvlAadkraslgnlvask.nvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllk....sskflpflvqllvgGvde..egpklyslDplGsiiedkytatGsGspvalgvLed..eYeedlsleeakklavk 159
                 ++Gik+++gvvl   k +    +va+  + k++++ d +++ + +G + da+ lv+    ea   e + + ki+ + la  l++  +    +  + pf + ++++G+d   ++ +l  l+p G+  +   +atG G + a + Le+   +++ + +eea+k +++
  MMETSP1061-20121228|7774_1  37 VIGIKCSNGVVLGCAKPINHKMVVATTgSYKRIHTCDTHVGCASTGFLPDARVLVQRTVEEAADWEDQYGSKIPPEVLADRLGQYAHyftlHGALRPFGAAVVLAGYDPdtKECSLQMLEPNGAPYKYYGVATGKGKQAAKTELEKlnLHKTPIPVEEAVKQILR 201
                 69*******************99987637899************************************************9998766222245789***********98445689*************99***************73247788999999987776 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.5e-07   0.00035       5     168 ..      34     200 ..      30     212 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.5e-07
   TIGR03690   5 gttivalaykgGvllaGdrratqGnliasr.dvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrs.nlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkkl..ykedlseedavrvav 168
                 +  ++ ++ ++Gv+l   +   +  ++a+    ++++++d++   + +G    a  lv+    e + +e   G+++  e  a+rl++  +   l  al+ + +  +l+Gyd ++++  +   +  g+ ++  +  ++G G   ak+ l kl  +k+ +  e+av+  +
  MMETSP1061-20121228|7774_1  34 AGPVIGIKCSNGVVLGCAKPINHKMVVATTgSYKRIHTCDTHVGCASTGFLPDARVLVQRTVEEAADWEDQYGSKIPPEVLADRLGQYAHYfTLHGALRPFGAAVVLAGYDPDTKECSLQMLEPNGAPYKYYG-VATGKGKQAAKTELEKLnlHKTPIPVEEAVKQIL 200
                 5668899999*****999999999999876267889****999999999999999999999999***********************98853799******9999**********************998766.589************9722555666677776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1595.87
//
Query:       MMETSP1061-20121228|7776_1  [L=473]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-05   20.1   0.0      0.049   10.7   0.0    2.9  2  TIGR02662 dinitro_DRAG: ADP-ribosyl-[dinitrogen reductase] hydrolase


Domain annotation for each model (and alignments):
>> TIGR02662  dinitro_DRAG: ADP-ribosyl-[dinitrogen reductase] hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0   0.00035       1.4       1      36 [.      92     129 ..      92     135 .. 0.84
   2 !   10.7   0.0   1.2e-05     0.049     221     284 ..     404     469 ..     191     472 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00035
   TIGR02662   1 lreralaaylGlavGdalGatvefltkg..eikakyGv 36 
                 +++r  +a +G+  Gdal ++  +   g  +ik++yG 
  MMETSP1061-20121228|7776_1  92 IENRIRGALWGFFAGDALASPTHWYYGGrrQIKKEYGH 129
                 6899****************999876553379999996 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 1.2e-05
   TIGR02662 221 ktdsfesclievvnqGGdadttGaiaGmlaGalyGveelPkawlkklda..kvlkeieaqvdalla 284
                 ++d + + l++  n GG+    G++ G + Ga  G+e lP +    l    +++kei+  v ++l+
  MMETSP1061-20121228|7776_1 404 RGDRVWEGLLANANVGGENVHKGSVLGAVLGARGGLEALPPRLAAGLVPrdELEKEIDDFVRTVLS 469
                 578888999*******************************99888775312567777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (473 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2152.79
//
Query:       MMETSP1061-20121228|7783_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1061-20121228|7785_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 509.10
//
Query:       MMETSP1061-20121228|7786_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.30
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|7778_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048   11.4   0.0      0.094   10.5   0.0    1.4  1  TIGR01018 rpsD_arch: ribosomal protein S4


Domain annotation for each model (and alignments):
>> TIGR01018  rpsD_arch: ribosomal protein S4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   2.3e-05     0.094      15      45 ..      23      53 ..      14      82 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.3e-05
   TIGR01018 15 khPwekerlerekklvakyglrnkkelWkae 45
                 hP + +r+   ++lv +ygl +k e+++ +
  MMETSP1061-20121228|7778_1 23 GHPMKPHRIRMTHNLVVNYGLYRKMEVFRPR 53
                69*************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1925.22
//
Query:       MMETSP1061-20121228|7782_1  [L=740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.31
# Mc/sec: 3150.71
//
Query:       MMETSP1061-20121228|7790_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|7791_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1710.58
//
Query:       MMETSP1061-20121228|7789_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.95    7.5   9.4      0.026   12.5   0.4    2.7  3  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family


Domain annotation for each model (and alignments):
>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.3      0.77   3.2e+03       8      13 ..     381     386 ..     377     396 .. 0.62
   2 ?   -0.3   0.1     0.062   2.5e+02      26      50 ..     412     434 ..     407     436 .. 0.75
   3 ?   12.5   0.4   6.3e-06     0.026       8      42 ..     468     502 ..     467     509 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.77
   TIGR02605   8 CtaCgh 13 
                 C  Cg+
  MMETSP1061-20121228|7789_1 381 CVMCGE 386
                 555554 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.062
   TIGR02605  26 lasCPeCgseelerllsaagfalkg 50 
                  + C +C ++ + r+l+    +++g
  MMETSP1061-20121228|7789_1 412 RKVCSHCDTNVVWRVLN--PLHCSG 434
                 57899999988888888..666665 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 6.3e-06
   TIGR02605   8 CtaCghefevlqkmsd.dplasCPeCgseelerlls 42 
                 C+ C++ f  + ++++  ++++C +C++ ++ + l 
  MMETSP1061-20121228|7789_1 468 CKGCKN-FRRWSSFNNqGKATKCSNCKERQAMKYLE 502
                 ******.*********************99988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2357.60
//
Query:       MMETSP1061-20121228|7793_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2466.83
//
Query:       MMETSP1061-20121228|7784_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 3007.47
//
Query:       MMETSP1061-20121228|7798_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 583.53
//
Query:       MMETSP1061-20121228|7796_1  [L=1034]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-05   20.7   0.0    7.9e-05   19.5   0.0    1.6  1  TIGR02751 PEPCase_arch: phosphoenolpyruvate carboxylase


Domain annotation for each model (and alignments):
>> TIGR02751  PEPCase_arch: phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.9e-08   7.9e-05     171     259 ..     639     732 ..     611     747 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.9e-08
   TIGR02751 171 pkkirvIPLiEdkdallkakeivkeyleaie.....peylRvFlarSDpAlnyGllaavllvKlAlselselseelgvevypIlGaGslpFRGn 259
                  + +rv PL+E+ d l +a e +k  +++         ++ v ++ SD+A  +G laa  +  l  +++ e++++ gve+    G G +  RG+
  MMETSP1061-20121228|7796_1 639 GNMMRVAPLFETLDDLNNAPERLKTLFSVPAylgaiSGKQEVMVGYSDSAKDAGRLAACWAQYLSQERMVEVAKSAGVELCFFHGKGGTVGRGG 732
                 45689*******************9999988899988999*************************************************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 3591.49
//
Query:       MMETSP1061-20121228|7800_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       549  (0.133837); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.14s 00:00:00.96 Elapsed: 00:00:00.68
# Mc/sec: 1201.49
//
Query:       MMETSP1061-20121228|7804_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1351.89
//
Query:       MMETSP1061-20121228|7806_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|7802_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    9.1  13.2       0.16    8.7   9.1    1.1  1  TIGR00237 xseA: exodeoxyribonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> TIGR00237  xseA: exodeoxyribonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   9.1     4e-05      0.16     258     382 ..      15     140 ..       7     177 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 4e-05
   TIGR00237 258 dellqrlksa.evrleraldtllaqkkarleqlaaslkrqspknklaakeakleklekrlqaalekqlertrqkktrltkrleqlnpspklkraqtrleqlerrlnkllnaqlkekrekfgtlvgk 382
                 d  +q+l+      l++a +++ a++k+ le+la++l+rq+  +  + +e + ++l+++ +   + q e  +   ++lt++ +  + +++ k  +  le+  + l++ +++q k  + k    + k
  MMETSP1061-20121228|7802_1  15 DATIQKLEIDhADALKKAAKQFDARRKSDLEELAQRLNRQHESRLEEVEEEHRKRLSQLQTDFGRSQEESDESLEEALTRIARVSHDHEREKGRRHALERTVEDLHRKMKMQQKDLQAKHVGELEK 140
                 5567777644145799****************************999999999999998888888888888999999*******9****9999999999999999988888888887776554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       464  (0.113116); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.09s 00:00:00.31 Elapsed: 00:00:00.59
# Mc/sec: 595.07
//
Query:       MMETSP1061-20121228|7807_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.47
# Mc/sec: 325.76
//
Query:       MMETSP1061-20121228|7799_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.11s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 2545.09
//
Query:       MMETSP1061-20121228|7801_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.10s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1732.89
//
Query:       MMETSP1061-20121228|7809_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-06   23.3   0.0     0.0028   15.0   0.0    2.3  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   6.7e-07    0.0028      21      63 ..     175     217 ..     170     230 .. 0.90
   2 !    5.8   0.0   0.00045       1.8     115     158 ..     296     340 ..     284     357 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.7e-07
   TIGR03162  21 DvpLaekgeeqaaalrekledvkfdavvsSplsRcrelAella 63 
                 D pL+e g++q+++ r+  +  k +avv Spl R+ ++A+l  
  MMETSP1061-20121228|7809_1 175 DSPLTELGKRQCEEQRAGASLLKPQAVVVSPLLRAVQTAKLTF 217
                 89*************************************9865 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.00045
   TIGR03162 115 EsvadfsqRveefleelake.ekenvlivtHgGvirallahllgl 158
                 Es  +  +R+ +fl + ++e  ++n+++v H+  + a++  +l+ 
  MMETSP1061-20121228|7809_1 296 ESETAKGNRIYDFLVNFLAErPERNLAVVCHSAWLAAMCNDVLDC 340
                 566666789999999988888****************99999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.76
# Mc/sec: 656.47
//
Query:       MMETSP1061-20121228|7808_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0082   12.8   1.1      0.013   12.2   0.8    1.2  1  TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase


Domain annotation for each model (and alignments):
>> TIGR00538  hemN: oxygen-independent coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.8   3.1e-06     0.013      50     101 ..      89     146 ..      77     152 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.1e-06
   TIGR00538  50 lslyvhiPfcekacyfcgcnviitkrkek...kdryleal...kkelalvaplldkdr 101
                    y+   +c+++c fc c+ i+t   +    +d++l +    +++l +  p++d+dr
  MMETSP1061-20121228|7808_1  89 SCRYLMARWCTRLCRFCECDNIVTTAATVmscVDQFLATNrhgQQQLHHHHPVVDTDR 146
                 556888899**************98765422278999754222689999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2289.33
//
Query:       MMETSP1061-20121228|7812_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1750.29
//
Query:       MMETSP1061-20121228|7815_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-13   48.8   0.0    1.8e-13   48.2   0.0    1.3  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.2   0.0   4.5e-17   1.8e-13      38     137 ..     148     257 .]     133     257 .] 0.82

  Alignments for each domain:
  == domain 1    score: 48.2 bits;  conditional E-value: 4.5e-17
   TIGR00005  38 kkvtanlklkikdgdlvtveveee.eeaevpvedkpldilfeDedilvidKPsglvvhptggyekntvlnallahlkeel..........vsrleivhRLDrdTSGllvva 137
                 +++ +  +l + ++d++  ++++e +++ + + +  l+il+ D +i v+dKPsg+   p+++ +   ++n +   l+ +              + +vhRLD  TSG++v a
  MMETSP1061-20121228|7815_1 148 QEQEQRASLLLLKKDRLRSKIRAEcRASLPLAIETTLKILYCDAHICVVDKPSGVLSVPGHRRNPS-LANLVYDTLEPSSydiilqgsidNIDQTVVHRLDMATSGIIVYA 257
                 456666788999999999999999666777777778***********************9987654.666666665533366699999887999**************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.35
# Mc/sec: 969.18
//
Query:       MMETSP1061-20121228|7814_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   11.2   0.0      0.087   10.4   0.0    1.3  1  TIGR00427 TIGR00427: membrane protein, MarC family


Domain annotation for each model (and alignments):
>> TIGR00427  TIGR00427: membrane protein, MarC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.1e-05     0.087     117     173 ..      46     100 ..      19     105 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.1e-05
   TIGR00427 117 PLalPllaGPGaitativliakasdisekllvvlaialvllitllllllaafiirrl 173
                 P+   +laGPGa++at  l  +a  +++   v  a +++l   + + +l +++ + +
  MMETSP1061-20121228|7814_1  46 PV--AILAGPGAVAATKHLAFRAAAVATSPGVTSATLSALVFYWAFQKLPDWVKEDI 100
                 44..479**************************999999999999999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 1976.69
//
Query:       MMETSP1061-20121228|7811_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.10s 00:00:00.44 Elapsed: 00:00:00.48
# Mc/sec: 2067.83
//
Query:       MMETSP1061-20121228|7816_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1855.85
//
Query:       MMETSP1061-20121228|7817_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   16.0   0.0      0.004   14.9   0.0    1.5  1  TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE


Domain annotation for each model (and alignments):
>> TIGR03012  sulf_tusD_dsrE: sulfur relay protein TusD/DsrE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.8e-07     0.004      57     101 ..     191     235 ..     177     244 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.8e-07
   TIGR03012  57 ldlvkaWqeLakehqvklvvCvaaalrrGvvdeeeaeekqlkken 101
                   +v++W++ ++e+  + ++C + a +rG+v + + ++++ ++++
  MMETSP1061-20121228|7817_1 191 KYIVEHWENPETEQGGREHLCLSCAVNRGIVGDYQDSRDNDTEDT 235
                 5799***************************99888887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 1986.44
//
Query:       MMETSP1061-20121228|7820_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|7823_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 449.96
//
Query:       MMETSP1061-20121228|7822_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       431  (0.105071); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.11s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 2208.88
//
Query:       MMETSP1061-20121228|7826_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-14   49.6   0.1    6.5e-11   39.8   0.0    3.0  3  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    2.4e-09   34.3   0.7      0.015   11.9   0.0    3.4  3  TIGR01818 ntrC: nitrogen regulation protein NR(I)
    9.1e-09   33.0   0.1     0.0039   14.5   0.0    3.2  3  TIGR03787 marine_sort_RR: proteobacterial dedicated sortase system response regulator
    7.4e-08   30.1   0.2    2.8e-06   25.0   0.0    2.7  3  TIGR01387 cztR_silR_copR: heavy metal response regulator
     0.0014   14.6   0.1     0.0037   13.2   0.0    1.6  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
     0.0038   15.1   2.7     0.0083   14.0   0.1    2.3  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0032       2.2       3      40 ..      85     122 ..      83     130 .. 0.86
   2 ?    1.4   0.0     0.052        35      13      70 ..     119     180 ..     115     186 .. 0.68
   3 !   39.8   0.0   9.6e-14   6.5e-11      67     127 ..     211     271 ..     202     291 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0032
   TIGR02154   3 krilvvedeeairellaynlekegyevveaedaeeala 40 
                 + +++v+dee+ir  +  +l  +gyev+ + da++ l 
  MMETSP1061-20121228|7826_1  85 HWVVLVDDEESIRYAVGDFLYDRGYEVTACADANSLLD 122
                 5689************************9999987655 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.052
   TIGR02154  13 airellaynleke..gyevveaedaeealalikeelPdlilldWmlpg..tsGielarrlrk 70 
                 ++ +l+a+  +++  + +   ++++++++   + +lPd+i+ d  +p+  + G el+  lr+
  MMETSP1061-20121228|7826_1 119 SLLDLIALRNNNNntNNDKNPSSNTDNSNDDPQPRLPDVIISDVRMPEsdKNGYELVEFLRS 180
                 55566665444430034455567788888888999********9999623679999988886 PP

  == domain 3    score: 39.8 bits;  conditional E-value: 9.6e-14
   TIGR02154  67 rlrkeeetreiPiimltargeeedrvrgletGaddyvvkPfspkellarikavlrrirpea 127
                 + r  ++ r++Pi++lta++  +dr++g  +Gad  v kPfsp+el++ +  ++r ++++ 
  MMETSP1061-20121228|7826_1 211 SKRYGASLRTVPIVLLTAKAMTDDRIKGYCAGADVVVPKPFSPEELVSILDNLIRLRQQRL 271
                 556667899***************************************9999988665554 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   2.2e-05     0.015       1      42 [.      87     128 ..      86     142 .. 0.90
   2 !    7.6   0.0   0.00044       0.3      41      64 ..     153     178 ..     141     183 .. 0.78
   3 !   11.1   0.0   3.9e-05     0.027      70     120 ..     220     270 ..     212     284 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.2e-05
   TIGR01818   1 vlvvdddrsirtvlekalaeaglevrtfdnaasvlralareq 42 
                 v +vdd++sir+ +   l + g+ev++ ++a+s+l  +a ++
  MMETSP1061-20121228|7826_1  87 VVLVDDEESIRYAVGDFLYDRGYEVTACADANSLLDLIALRN 128
                 5689*******************************9988664 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00044
   TIGR01818  41 eqpdllitdvrmP..gedgldllkki 64 
                 + pd++i+dvrmP  +++g +l++ +
  MMETSP1061-20121228|7826_1 153 RLPDVIISDVRMPesDKNGYELVEFL 178
                 569**********3335677777655 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 3.9e-05
   TIGR01818  70 klpvivmsahsdldaavkayqrGafeylpkPfdldeavalveralaeakeq 120
                 ++p+++++a++  d  +k y  Ga   +pkPf  +e+v++ +  +  ++++
  MMETSP1061-20121228|7826_1 220 TVPIVLLTAKAMTDDRIKGYCAGADVVVPKPFSPEELVSILDNLIRLRQQR 270
                 589*************************************99877766655 PP

>> TIGR03787  marine_sort_RR: proteobacterial dedicated sortase system response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00019      0.13       3      37 ..      87     121 ..      85     132 .. 0.87
   2 !    5.2   0.0    0.0042       2.9      41      72 ..     151     182 ..     125     186 .. 0.86
   3 !   14.5   0.0   5.7e-06    0.0039      72     121 ..     218     267 ..     210     281 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00019
   TIGR03787   3 ialvedeaairenyadalkkqGykvetyadrssae 37 
                 ++lv+de++ir    d l  +Gy+v++ ad +s  
  MMETSP1061-20121228|7826_1  87 VVLVDDEESIRYAVGDFLYDRGYEVTACADANSLL 121
                 79************************999987755 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0042
   TIGR03787  41 karlpdlaiidvGlgeeidGGfelcqelrsls 72 
                 + rlpd++i dv + e  + G+el + lrs +
  MMETSP1061-20121228|7826_1 151 QPRLPDVIISDVRMPESDKNGYELVEFLRSGA 182
                 679*************************9965 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 5.7e-06
   TIGR03787  72 sktlpiifltardsdfdtvsGlrlGaddyltkdislahllariaalfrrl 121
                  +t+pi++lta+    d ++G   Gad  + k  s + l++ +  l+r  
  MMETSP1061-20121228|7826_1 218 LRTVPIVLLTAKAMTDDRIKGYCAGADVVVPKPFSPEELVSILDNLIRLR 267
                 579**************************************999999843 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1   7.3e+02       1      33 [.      87     119 ..      87     128 .. 0.79
   2 ?    1.7   0.0     0.052        36      44      66 ..     156     180 ..     150     186 .. 0.84
   3 !   25.0   0.0   4.1e-09   2.8e-06      69     120 ..     219     270 ..     212     313 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.1
   TIGR01387   1 ilvvedeqktaeylqqGlsesGyvvdivsnGrd 33 
                 +++v+de+     + + l + Gy v + ++ + 
  MMETSP1061-20121228|7826_1  87 VVLVDDEESIRYAVGDFLYDRGYEVTACADANS 119
                 568889988888899999999999998887765 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.052
   TIGR01387  44 dliildvmlpgld..Gwevlkalre 66 
                 d+ii dv +p  d  G+e+++ lr 
  MMETSP1061-20121228|7826_1 156 DVIISDVRMPESDknGYELVEFLRS 180
                 89********866559*****9994 PP

  == domain 3    score: 25.0 bits;  conditional E-value: 4.1e-09
   TIGR01387  69 ketpvllltardevadkvkGlelGaddylvkpfefaellarvrtllrrsesk 120
                 +  p++llta+   +d++kG+  Gad  + kpf+  el++ + +l+r  +++
  MMETSP1061-20121228|7826_1 219 RTVPIVLLTAKAMTDDRIKGYCAGADVVVPKPFSPEELVSILDNLIRLRQQR 270
                 4679************************************999987744433 PP

>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.16   1.1e+02     702     738 ..      85     121 ..      34     128 .. 0.78
   2 !   13.2   0.0   5.4e-06    0.0037     775     859 ..     219     303 ..     206     357 .. 0.66

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.16
   TIGR02956 702 arvLlvEDNevnamvaqglleklGhkvtlaesgksAl 738
                   v lv+D e       ++l   G++vt+ ++++s l
  MMETSP1061-20121228|7826_1  85 HWVVLVDDEESIRYAVGDFLYDRGYEVTACADANSLL 121
                 3688999988777777899**********99998765 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 5.4e-06
   TIGR02956 775 eelkfiavsAhvfnedvekylaagFdgflaKPlsekqLvatlakilegkkseeeapvleksvsl.eeasvieseqkdslaesqeks 859
                  +++++ ++A+ +++d  k   ag d +++KP s ++Lv++l + ++  ++  + + l  s s  +++s+  s+ ++s++ s+e +
  MMETSP1061-20121228|7826_1 219 RTVPIVLLTAKAMTDDRIKGYCAGADVVVPKPFSPEELVSILDNLIRLRQQRLRPDALLVSSSSsSSTSSSSSSTSTSTSSSRE-E 303
                 369999****988888666667899*******************9976666666555444333303333333333333222222.2 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.2       1.9   1.3e+03      80      89 ..      58      67 ..      38      85 .. 0.44
   2 ?    0.7   0.0      0.14        93      41      75 ..     105     146 ..      87     171 .. 0.64
   3 !   14.0   0.1   1.2e-05    0.0083      78     167 ..     284     382 ..     249     410 .. 0.58

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 1.9
   TIGR03499 80 kaeekeekek 89
                ++++++++e+
  MMETSP1061-20121228|7826_1 58 NSDNENDNEN 67
                1111111111 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.14
   TIGR03499  41 skkkvevvaaideee.........sasaaseeeeakkaleeaep 75 
                   + +ev+a +d ++         +  ++++++++++  +++++
  MMETSP1061-20121228|7826_1 105 YDRGYEVTACADANSlldlialrnN--NNNTNNDKNPSSNTDNS 146
                 56679*******9999999977532..22222222222222222 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 1.2e-05
   TIGR03499  78 lskaeekeekekeaeekaaeaaqeaekkleeae..............eelrkelkalkellekqlselal..eeedperakllkklleagvse.elarelleklke.....k 167
                 +s+++++ +++++++++ +             e              ++l++el+++++++e+ ++++ +  +     +++ + +ll++g s+ e+arell  +       +
  MMETSP1061-20121228|7826_1 284 SSTSSSSSSTSTSTSSSRE-------------ElssssssivqqhdlRKLKAELEEIRSIVEHNVATTVRktDVVLTDKERTVVRLLSEGCSPrEMARELLGGATGggggaS 382
                 1111111111111111111.............111122344555567*******************9866785555566666666777776652788888887777644332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.41
# Mc/sec: 1329.55
//
Query:       MMETSP1061-20121228|7824_1  [L=945]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0052   12.3  25.7     0.0094   11.5  17.8    1.3  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.11    7.9  28.3       0.15    7.5  19.6    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.32    7.7  20.2       0.24    8.1  12.9    1.4  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5  17.8   6.9e-06    0.0094     726     946 ..      15     235 ..       2     245 .. 0.42

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.9e-06
   TIGR02168 726 lerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreele...elseel.relekkvkelereleelreklaqlelrleeleveiaelqer 946
                 + +k++el+ +l+ l+   ++l+++++   ++ ++ e + ++  e +++++e+l + ++  +++e +++ l+e++k+ r++++ +++ +++l+++ +  +++   +e+ +++ ++ +  l++q+++le ++++ e+  +e++++l+e+e+ + +l++  a+++  +  +r+  +   +ls     +  ++v++l++el +++ek+++le +le+ ++ei  l+er
  MMETSP1061-20121228|7824_1  15 KAEKIAELHGKLKLLKDDNQRLRNEAKGSLSRSTHSEGSSRSFGE-RDKLKEALRALKKVTVKQEVSLASLREKAKERRTEIEHKNKIIKQLQQDNKAFRKA---HENMTNNDSDDVSVLRSQLADLELKLAKEENDKAEQSRKLKESEAGISSLQALLAKSSGGRGLRRSGSSdskTLSVMSdSTSGEDVNKLKKELARKTEKITNLEYELEGCKNEIHDLRER 235
                 334444444444444444444444444444444444444333333.44444455555555555555555555555555555555555555444444433322...222223333344444444444444444444444444444444444444444444444433333333211000111111022234455555555556666666666666655555555554 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5  19.6   0.00011      0.15     681     898 ..      16     235 ..       2     241 .. 0.41

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00011
   TIGR02169 681 rerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelse......ekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleae 898
                 +e++ eL  +l+ l+++ +r++++++   s+  ++e + +    e+++l+e  ++lk+   + e +l +l e+ +e ++e+++ ++ i++l+++ ++ ++a e++ +++s+      +++  +e +l k e+  ++++ +l+e ea +++l+   +ll +++     ++    + k         +  ++++l++el+++  ++ +Le el++ k+e+++l++ 
  MMETSP1061-20121228|7824_1  16 AEKIAELHGKLKLLKDDNQRLRNEAKGSLSRSTHSEGSSRSFG-ERDKLKEALRALKKVTVKQEVSLASLREKAKERRTEIEHKNKIIKQLQQDNKAFRKAHENMTNNDSDdvsvlrSQLADLELKLAKEENDKAEQSRKLKESEAGISSLQ---ALLAKSSGGRGLRRSGSSDSKTLSVMSDSTSGEDVNKLKKELARKTEKITNLEYELEGCKNEIHDLRER 235
                 3455555555555555555555555544444444444433332.333555555555555555555555555555555555555555555555555555555555544433211111122223333333333333333333333333333333...233333322222222222222222222222333355555555555555555555555555555555443 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1  12.9   0.00018      0.24      95     253 ..      16     172 ..      11     177 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00018
   TIGR03794  95 rerlqearekLtqLqeqlekvrnfqvrekearekkflkskeaLeetigklreeeaaLsqevakqrqlls..rklaklkrarillqqarkeqekrdeadkaeaeyelqtkadeeeletvvaklkqadlqlasvaekeletvearikevreeieeleaklnln 253
                  e++ e ++kL+ L+++++++rn   ++   r  +  +s+    e   kl+e+  aL+++  kq   l   r++ak +r++i  +++ ++q ++d++   +a  e  t+ d +++  +  +l +++l+la  +e +  + + ++ke++  i+ l+a l++ 
  MMETSP1061-20121228|7824_1  16 AEKIAELHGKLKLLKDDNQRLRNEA-KGSLSRSTHSEGSSRSFGE-RDKLKEALRALKKVTVKQEVSLAslREKAKERRTEIEHKNKIIKQLQQDNKAFRKAH-ENMTNNDSDDVSVLRSQLADLELKLA-KEENDKAEQSRKLKESEAGISSLQALLAKS 172
                 68899999**************955.5666777777777777777.589999999998887777655441133445578888888888888555444333332.34678888887445559999999999.788888888999***********9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       340  (0.0828864); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.60u 0.14s 00:00:00.74 Elapsed: 00:00:00.41
# Mc/sec: 3042.19
//
Query:       MMETSP1061-20121228|7827_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1061-20121228|7828_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 2777.05
//
Query:       MMETSP1061-20121228|7829_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-05   21.0   0.1     0.0098   13.4   0.0    2.5  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    0.00011   19.6   0.2    0.00091   16.5   0.1    2.1  1  TIGR02415 23BDH: acetoin reductases
    0.00029   18.0   0.1       0.03   11.4   0.0    2.7  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
     0.0033   14.7   0.0      0.063   10.5   0.0    2.1  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0042       4.3      53     132 ..      90     169 ..      42     172 .. 0.79
   2 !   13.4   0.0   9.5e-06    0.0098     146     186 ..     202     244 ..     199     262 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0042
   TIGR01830  53 vkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriin 132
                 v+  +++e++ ++  ++ +++   +  lv+  G++ ++    m  e +++ ++vn  g+ +++++ l  ++ +++ ++in
  MMETSP1061-20121228|7829_1  90 VREWIQKENNNNSSSNNNNSNNPGLTGLVQFHGVAFNGPSAYMPIEMYQKQLDVNFVGTIRIVQEFLPLLQDQHASNLIN 169
                 344455555555556666666667888999999999999999999999999*******9999999999888888877776 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 9.5e-06
   TIGR01830 146 anYaasKaGligltkslakEl..asrnitvnavaPGfietdmt 186
                 + Y +sK  l + ++sl +El  ++r i v ++ PGf++  m 
  MMETSP1061-20121228|7829_1 202 TAYMSSKFALEAYSQSLRQELfmTNRPIDVAVINPGFVKPTML 244
                 67******************7447889************9885 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   8.9e-07   0.00091     144     190 ..     198     246 ..      73     268 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 8.9e-07
   TIGR02415 144 spelsaysstkfavrgltqtaakeL..akkgitvnayaPGivktemree 190
                  p l+ay s+kfa+ ++ q+  +eL   ++ i v   +PG vk +m  e
  MMETSP1061-20121228|7829_1 198 PPLLTAYMSSKFALEAYSQSLRQELfmTNRPIDVAVINPGFVKPTMLVE 246
                 4789********************943567799**********999754 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   2.9e-05      0.03     145     190 ..     199     247 ..      42     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.9e-05
   TIGR01963 145 afKsaYvaaKHglvGltKvlAlEv..AetgitanaicPgyvr.tpLvek 190
                 ++ +aY ++K +l  ++++l  E    +  i + +i+Pg+v+ t Lve+
  MMETSP1061-20121228|7829_1 199 PLLTAYMSSKFALEAYSQSLRQELfmTNRPIDVAVINPGFVKpTMLVEE 247
                 5668****************9997225667***********86888886 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   6.2e-05     0.063      99     209 ..     119     249 ..     110     264 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 6.2e-05
   TIGR03971  99 anaGvlsygrafelseeqWdtvldvnlkGvWktvkavvP........alierkn....GG....siiivssvaglk..alpglahyaaakhGlvgltktlanel..aeygirvnsihPtsvdtamiepeam 209
                    Gv+  g++  +  e +++ ldvn+ G+ + v+  +P        +li++kn     G     i+++++  g    + p l+ y ++k+ l +  ++l +el  ++  i v +i+P  v+ +m+ +e +
  MMETSP1061-20121228|7829_1 119 QFHGVAFNGPSAYMPIEMYQKQLDVNFVGTIRIVQEFLPllqdqhasNLINNKNnnndAGpyrsRIVLTGTGGGPCspCPPLLTAYMSSKFALEAYSQSLRQELfmTNRPIDVAVINPGFVKPTMLVEEGT 249
                 556788888888888999999999999999999999999222222222455444222222233246666665553311457889999**************99733566799999***9999888775544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1378.12
//
Query:       MMETSP1061-20121228|7834_1  [L=866]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (866 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.11s 00:00:00.46 Elapsed: 00:00:00.45
# Mc/sec: 2540.06
//
Query:       MMETSP1061-20121228|7831_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 982.00
//
Query:       MMETSP1061-20121228|7835_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 1107.56
//
Query:       MMETSP1061-20121228|7839_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.044   11.2   0.6      0.054   10.9   0.4    1.1  1  TIGR00197 yjeF_nterm: YjeF homolog, N-terminus


Domain annotation for each model (and alignments):
>> TIGR00197  yjeF_nterm: YjeF homolog, N-terminus
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.4   1.3e-05     0.054      45      88 ..      66     112 ..      59     137 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.3e-05
   TIGR00197  45 akkvivlcGpG......nNGGDGfvvARhlkgfkveVfllkkeeeielte 88 
                 ++ v v+ G+G      + GGDG vvAR+  g + +V +    ++    e
  MMETSP1061-20121228|7839_1  66 NRSVNVMGGHGlvlpeqQEGGDGDVVARNGNGNGWVVSVFTSDQDR---E 112
                 5667777777766665578***********9877777777666544...3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|7840_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.1    1.5  18.0        8.5    1.6  12.5    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  12.5    0.0021       8.5     972    1004 ..      18      49 ..       2      55 .] 0.39

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0021
   TIGR00927  972 dGGdseeeeeeeee.eeeeeeeeeeeeeeeeene 1004
                  d  ds++e+e+e++ e++e++ee++e+++e+en+
  MMETSP1061-20121228|7840_1   18 D--DSDNENENENKkENNEKDEENNENDKENEND 49  
                  2..3333322222223333334444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|7842_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12   10.5   2.9      0.093   10.9   1.2    1.4  1  TIGR02976 phageshock_pspB: phage shock protein B
       0.22    8.5  21.3       0.25    8.3  14.8    1.1  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.2   4.5e-05     0.093      19      63 ..      38      82 ..      33      93 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 4.5e-05
   TIGR02976 19 llwlllhyrskrktaaslstddlalLeelsekakrleeRidtLEr 63
                +++    +r++++++a+ ++ d ++Le l++k +r ++R +  Er
  MMETSP1061-20121228|7842_1 38 PPSTAGTDRNRNQASAKKTDGDNEKLERLKRKEERQRKRHEKEER 82
                5666667899***************************99887665 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3  14.8   0.00012      0.25      78     145 ..      46     101 ..       1     108 [. 0.30

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00012
   TIGR02794  78 kleqqaeeakkkqaaeqarqkelekqraaaekaakkaeeaakekeekkkqaeeakakqaaEakakaea 145
                 + ++qa+++k++     +++++l  +r+++ +       ++ ekee++kq ee+++k+++ +  +++ 
  MMETSP1061-20121228|7842_1  46 RNRNQASAKKTDGDN--EKLERL--KRKEERQ------RKRHEKEERRKQREERREKHEQKR--RQKR 101
                 122222222222221..222223..1111111......122222223333333333322222..1111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       365  (0.088981); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 665.95
//
Query:       MMETSP1061-20121228|7841_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.3   0.0      0.028   12.4   0.0    1.4  1  TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme


Domain annotation for each model (and alignments):
>> TIGR00013  taut: 4-oxalocrotonate tautomerase family enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   6.7e-06     0.028      12      48 ..      42      75 ..      33      84 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6.7e-06
   TIGR00013 12 GrtdEqKreLiekvtelvaetlgankesivvlIdEve 48
                G   ++K e  ++ ++++ae++g++++ i v I+  +
  MMETSP1061-20121228|7841_1 42 G---DKKLEVMKEASKAIAEVTGKPEAYIGVSITDNA 75
                5...7999***********************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 950.32
//
Query:       MMETSP1061-20121228|7844_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 1013.92
//
Query:       MMETSP1061-20121228|7846_1  [L=1105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 3739.69
//
Query:       MMETSP1061-20121228|7852_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|7849_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-72  240.9  11.4      2e-71  238.4   7.9    1.9  1  TIGR01297 CDF: cation diffusion facilitator family transporter


Domain annotation for each model (and alignments):
>> TIGR01297  CDF: cation diffusion facilitator family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.4   7.9   4.9e-75     2e-71       3     282 ..      13     405 ..      11     408 .. 0.97

  Alignments for each domain:
  == domain 1    score: 238.4 bits;  conditional E-value: 4.9e-75
   TIGR01297   3 rallialllnlllmvveivggllagSlAllaDaaHslsDvaaliiallalrisrkpaderhpfGygraeiLaallnalflvvvalfilyeAierlin.peeeiegslmlivaivglivnlilalllkra.........Gkkes................................................................................................................slalraaalhvlsDllsSvgvligvlliyfg.gwkiaDpiaslvisvlilktafrllkesievLleaapdeeldlievkkkilkiegvksvhdlhiwrigsgklvldvhvevdpelsakeaheialeiereilkrepevshvtiqvep 282
                 r+l+ia +l+ l+m+vei ggl++gSlA+l+DaaH ++D+a++++a++a ++++ pa+++h++G +r e Laal++ + l +v++ ++ eA++r++  pe+ ++g++m+iva++g++vn++la++l +          G+ +s                                                                                                                +++l+aa+lhvl+Dl +S++v++g++ i+++ +w+++Dpi++l +  ++l+++++++++s+++Lle+ p+  ++  +v  +i ++ +v +vhdlhiw i++g+++l+vh + ++++ a       ++i++++lk  ++++h tiqv++
  MMETSP1061-20121228|7849_1  13 RRLYIATILCSLFMIVEIAGGLVSGSLAILSDAAHLFADLASFAVAIAASYLASLPATAKHTYGLKRTESLAALFSMASLGLVSVGLAAEALKRMVWpPEDGVDGNVMTIVAGIGVLVNIALAVVLGENhvhlpggdhGHDHShdhgghgdchghgqghhddlldtkvnhhhhhddedddddhsngcceheheeqhdhghdhdhdhghkhhdhdhdhgydepkhetsplivstgghedhrddgdhhhhhqtrqhrNVNLHAAYLHVLGDLAQSFAVFLGGITIWWKpEWHMIDPILTLGFCAMVLWSTIGVVRSSVAILLEEIPP-GIEWRKVYDAISAVSNVYDVHDLHIWCISHGQTALSVHCTSTDDNAA-------RNINQACLK--FGIKHSTIQVDK 405
                 899*********************************************************************************************988999************************99888888766666666*************************************************************************************************************************************************************************************7.****************************************9999975.......889999998..7*********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 2082.49
//
Query:       MMETSP1061-20121228|7855_1  [L=709]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 2835.77
//
Query:       MMETSP1061-20121228|7856_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.32
# Mc/sec: 820.81
//
Query:       MMETSP1061-20121228|7857_1  [L=826]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00044   16.9   0.9    0.00044   16.9   0.6    2.3  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   2.2      0.03   1.2e+02      81      96 ..      71      86 ..       6     103 .. 0.69
   2 !   16.9   0.6   1.1e-07   0.00044       6     106 ..     358     454 ..     353     459 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.03
   TIGR01645 81 qtlahqkqqlenqqrq 96
                q +a+q+qq+++qq+q
  MMETSP1061-20121228|7857_1 71 QLVAQQRQQQQQQQQQ 86
                4445555555555544 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.1e-07
   TIGR01645   6 drreaasrPavsvavsvlgdkkkpqkqtgevkvgpGkkdaakillGlsklsserkddiqkakkameqsikqvllkqtlahqkqqlenqqrqvqrqqalaim 106
                  + +++s+Pa +  + +++     q++ +++++g G+++a+ il  l+      +   q+a+ a + s  ++++k  ++  +  + +q+r    + +l+ m
  MMETSP1061-20121228|7857_1 358 SHSNGSSHPASNSGMMAMA---ELQRRANSMQMGFGHQSAQNILAALTSGNGSSHSLAQMARNASNGSFGNIMMKSGISRDQLSQLAQNRG-LSSASLSTM 454
                 56788999**999999999...5566789*************************************************9887766666665.455666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (826 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.40
# Mc/sec: 2725.57
//
Query:       MMETSP1061-20121228|7859_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1512.38
//
Query:       MMETSP1061-20121228|7860_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 540.53
//
Query:       MMETSP1061-20121228|7858_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-23   78.7   0.2    7.7e-13   45.9   0.0    4.1  3  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    7.3e-14   49.1   0.0    5.7e-08   29.7   0.0    2.1  2  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    1.4e-10   38.3   0.2    3.9e-06   23.7   0.0    2.6  3  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family


Domain annotation for each model (and alignments):
>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.9   0.0   5.6e-16   7.7e-13      32     137 ..     185     299 ..     171     304 .. 0.84
   2 !   18.2   0.1   1.6e-07   0.00022     143     239 ..     334     456 ..     326     478 .. 0.76
   3 !    6.0   0.0   0.00082       1.1     293     323 ..     550     581 ..     541     583 .. 0.86

  Alignments for each domain:
  == domain 1    score: 45.9 bits;  conditional E-value: 5.6e-16
   TIGR02824  32 ikvaAaGvNrpDvlQraGkY........ppppgase...ilGLEvaGevvavgeevskfkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTvwsnlfelakl 137
                 i  +A+G+N +D++   G Y        p  +g s    ++GLE aG+vv+    + +f++ +rv++ +  G+yae v v+   ++p+p++ s++e+A+    ++T+w+ l+e++++
  MMETSP1061-20121228|7858_1 185 IATRAIGLNFADIFTVLGLYsaanlvrqPKSKGGSLsafVPGLEFAGTVVDDP--TGTFQKDERVLGFTRFGAYAERVRVSPVFLIPLPDHWSFAEGASFLVQALTAWHGLVEIGRM 299
                 7889****************33333332233454423449*********9755..78899******************************************************987 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1.6e-07
   TIGR02824 143 vLihggasGiGttaiqlakalgakvlvtagsdekle.....aaekLGad..vainyreedFvevvkeeteg...................kGvdvilDivggsyleknlkalakdGrlvlial 239
                 v++h++++G+G  a  +  + g  vl  +g++ k +     ++++L  d  v+++ +e+dF++++ +e ++                   +G+d++++ +gg+y++  ++al++ G lv+ + 
  MMETSP1061-20121228|7858_1 334 VIVHSASGGVGLWASEIVARRGGIVLGIVGNEAKKDvflnrIVRELSPDsrVMVRGEERDFADRLAQELDSihgnncsdhssllelaqagHGADMVMESLGGKYFSASFDALNDGGALVTFGS 456
                 7889999999999999888888889988998888763211245667655115566678899988877655444555666666777776669****************************9986 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.00082
   TIGR02824 293 rpvidkvfple.daakAhellessehiGKivL 323
                  pvi + f+++ +a +A e+l+ ++++GK+vL
  MMETSP1061-20121228|7858_1 550 PPVIGEQFDFRtQAVDAMEKLKGGKTVGKVVL 581
                 589999999853899****************9 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.7e-07   0.00037     125     181 ..     240     295 ..     227     305 .. 0.90
   2 !   29.7   0.0   4.1e-11   5.7e-08     192     313 ..     333     458 ..     318     462 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.7e-07
   TIGR01751 125 mlsseqriwGyetnyGslaefalvedsqllPkPkhLtWeeaacllLtaatayrqLvg 181
                  ++ + r+ G+ t +G++ae  +v+   l+P P h ++ e a++l+ a ta++ Lv+
  MMETSP1061-20121228|7858_1 240 TFQKDERVLGF-TRFGAYAERVRVSPVFLIPLPDHWSFAEGASFLVQALTAWHGLVE 295
                 578899****9.89**************************************99985 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 4.1e-11
   TIGR01751 192 avLiWGaaGGLGsyaiqlaraaGgipvavvssedka.....eiarelGaea..vidrqdfdlkgrlpdlnseavkewtkevkrfgkairevlGeedvkivlehsGratfpvsvyvvkrgGmvvicggtt 313
                 +v++  a+GG+G +a  +++ +Ggi +++v +e+k+     +i+rel  ++  ++  ++ d+ +rl++   + + +   +  ++ +      G +  ++v+e  G + f++s    + gG +v+ g+tt
  MMETSP1061-20121228|7858_1 333 VVIVHSASGGVGLWASEIVARRGGIVLGIVGNEAKKdvflnRIVRELSPDSrvMVRGEERDFADRLAQELDSIHGNNCSDHSSLLELAQ--AG-HGADMVMESLGGKYFSASFDALNDGGALVTFGSTT 458
                 68999*****************************9633333789999876421555567889999988733334444334444433322..33.779******************************98 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.9e-09   3.9e-06      58     131 ..     223     290 ..     198     301 .. 0.91
   2 !   12.0   0.1   1.1e-05     0.015     143     187 ..     326     372 ..     313     423 .. 0.79
   3 ?   -2.9   0.0      0.37   5.1e+02     215     244 ..     428     457 ..     405     459 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 2.9e-09
   TIGR02823  58 lvpGiDlaGtvvesedprfkeGdeVivtgydlgvshaGGyseyarvkadwvvplPeglslkeamilGtAGfTAa 131
                 +vpG ++aGtvv+    +f++ ++V      lg +++G+y+e +rv   +++plP++ s  e + + +  +TA 
  MMETSP1061-20121228|7858_1 223 FVPGLEFAGTVVDDPTGTFQKDERV------LGFTRFGAYAERVRVSPVFLIPLPDHWSFAEGASFLVQALTAW 290
                 69**********************9......599**************************99998888888875 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.1e-05
   TIGR02823 143 tpeege..vlVtGAtGgVgslavalLsklGyevvavtgkkeeeeylk 187
                 +p++ +  v+V  A+GgVg  a ++++++G  v+ ++g+++++++  
  MMETSP1061-20121228|7858_1 326 EPKQRPfvVIVHSASGGVGLWASEIVARRGGIVLGIVGNEAKKDVFL 372
                 45554433889*****************************9998654 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.37
   TIGR02823 215 gavDtvGgkvlanvlkqlkyggavaacGla 244
                 ++++++Ggk+ ++   +l+ gga  + G +
  MMETSP1061-20121228|7858_1 428 MVMESLGGKYFSASFDALNDGGALVTFGST 457
                 67789999*999999999999999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.43
# Mc/sec: 1795.67
//
Query:       MMETSP1061-20121228|7862_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 521.67
//
Query:       MMETSP1061-20121228|7863_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.09s 00:00:00.20 Elapsed: 00:00:00.35
# Mc/sec: 346.94
//
Query:       MMETSP1061-20121228|7867_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 290.38
//
Query:       MMETSP1061-20121228|7868_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.07s 00:00:00.19 Elapsed: 00:00:00.40
# Mc/sec: 501.56
//
Query:       MMETSP1061-20121228|7861_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          5    5.0  12.7       0.12   10.1   2.6    2.4  2  TIGR00964 secE_bact: preprotein translocase, SecE subunit


Domain annotation for each model (and alignments):
>> TIGR00964  secE_bact: preprotein translocase, SecE subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   2.6     3e-05      0.12      20      56 ..     301     337 ..     300     338 .. 0.95
   2 ?   -0.9   1.1     0.086   3.5e+02      28      40 ..     345     357 ..     340     361 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3e-05
   TIGR00964  20 rkellrytlvVivfvlflslfvflvDyvigkllsllf 56 
                 +k+ll+ +l Vi + +f+ lf++  Dy+ ++l s+++
  MMETSP1061-20121228|7861_1 301 KKKLLTVVLFVISTLVFYDLFFGRQDYIVSWLHSFVV 337
                 7999****************************99986 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.086
   TIGR00964  28 lvVivfvlflslf 40 
                 l+V++fv +++++
  MMETSP1061-20121228|7861_1 345 LAVFAFVGIFVVS 357
                 79*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.49
# Mc/sec: 1678.15
//
Query:       MMETSP1061-20121228|7873_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1370.17
//
Query:       MMETSP1061-20121228|7870_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 2018.33
//
Query:       MMETSP1061-20121228|7871_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0058   14.1   1.5     0.0099   13.4   1.1    1.3  1  TIGR02642 phage_xxxx: uncharacterized phage protein
     0.0063   13.7   0.8      0.013   12.7   0.6    1.4  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
  ------ inclusion threshold ------
        0.1   10.7   1.5       0.59    8.3   0.1    2.8  3  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR02642  phage_xxxx: uncharacterized phage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   1.1   7.3e-06    0.0099     173     207 ..      41      81 ..      22      91 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 7.3e-06
   TIGR02642 173 yavakaaesqkCPrCrgtglt....lrrq..eeCdkCaGtG 207
                  a a a  s++C +C+gtgl+     rr+    C+ C+G G
  MMETSP1061-20121228|7871_1  41 AAAAAASPSERCWKCKGTGLKfqksTRRHdgPPCKVCNGEG 81 
                 57788999***********86222245553347******99 PP

>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.6   9.4e-06     0.013     143     178 ..      49      89 ..      41      95 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.4e-06
   TIGR02349 143 kekCetCkGsGakkgsklkt.....CktCgGtGqvrkqqgt 178
                 +e+C +CkG+G k +++++      Ck C+G+G  +++q+ 
  MMETSP1061-20121228|7871_1  49 SERCWKCKGTGLKFQKSTRRhdgppCKVCNGEGIRKRSQRA 89 
                 68999******998887664445559*******88887764 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.25   3.4e+02      12      29 ..     138     155 ..     136     158 .. 0.93
   2 ?   -4.0   0.0       2.6   3.6e+03      84     104 ..     226     246 ..     212     246 .. 0.62
   3 ?    8.3   0.1   0.00043      0.59      23      90 ..     270     337 ..     263     350 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.25
   TIGR02469  12 LakLrlkkgdvllDiGaG 29 
                 L++Lr+k+g+v+   G+G
  MMETSP1061-20121228|7871_1 138 LEHLRPKPGEVVGSLGCG 155
                 899**************9 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 2.6
   TIGR02469  84 dsleeadavfvgGsgkklkei 104
                 d +++  + + gGs+ k+  i
  MMETSP1061-20121228|7871_1 226 DHNDDQRQRMFGGSRDKISTI 246
                 334555555669999988765 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00043
   TIGR02469  23 llDiGaGtGsvtieaarl.vpkgrvyaierneealelieeNlrrfgvsnieivegdapkaeedsleead 90 
                   DiG G+Gsv +  a + ++++r +++e +e ++  +++ l+ + + +  +  gd+ ++++++l+  d
  MMETSP1061-20121228|7871_1 270 HADIGTGCGSVLMMTAWAfLGEIRSVGVEAQEVSFGCLKRGLEWN-LGSDGTHPGDVVQIQHNDLRTWD 337
                 57********9877665515669999***9999999999887755.66666667777666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2840.21
//
Query:       MMETSP1061-20121228|7877_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 736.36
//
Query:       MMETSP1061-20121228|7875_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-28   94.2  11.5    8.2e-05   20.4   0.0   11.5 11  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0     2e-08   8.2e-05       1      27 [.       9      35 ..       9      37 .. 0.95
   2 ?   -0.5   0.0      0.09   3.7e+02       2      20 ..      85     103 ..      84     113 .. 0.86
   3 !    6.1   0.0    0.0007       2.9      17      35 .]     160     179 ..     159     179 .. 0.86
   4 !   10.3   0.0   3.3e-05      0.13       1      23 [.     180     202 ..     180     204 .. 0.91
   5 ?   -0.2   0.0     0.071   2.9e+02       1      14 [.     222     235 ..     222     235 .. 0.90
   6 !    7.6   0.0   0.00024      0.98      17      35 .]     242     261 ..     241     261 .. 0.91
   7 !   11.6   0.0   1.3e-05     0.053       2      34 ..     263     299 ..     262     300 .. 0.75
   8 !   15.1   0.0   9.5e-07    0.0039       1      28 [.     301     328 ..     301     331 .. 0.90
   9 ?   -0.5   0.0     0.089   3.7e+02      16      28 ..     357     369 ..     340     370 .. 0.81
  10 !   14.1   0.1   2.1e-06    0.0085       1      29 [.     454     482 ..     454     485 .. 0.91
  11 ?   -0.9   0.4      0.12     5e+02      21      33 ..     521     533 ..     513     541 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2e-08
   TIGR00756  1 vtyntlisglckagrveeAlelfdeMk 27
                +tynt+i ++++ag++   +++++eM+
  MMETSP1061-20121228|7875_1  9 ITYNTVITAYSRAGHPLQSEKVLEEMI 35
                69************************7 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.09
   TIGR00756   2 tyntlisglckagrveeAl 20 
                 ++++++ g ++ g ++ A+
  MMETSP1061-20121228|7875_1  85 SFTSVLAGWARVGTFDAAK 103
                 7999999999999888886 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0007
   TIGR00756  17 eeAlelfdeMker.givPda 35 
                  +A+ lf+eM++  +i Pd+
  MMETSP1061-20121228|7875_1 160 QHAEALFREMRDThNIQPDV 179
                 689*******8887999985 PP

  == domain 4    score: 10.3 bits;  conditional E-value: 3.3e-05
   TIGR00756   1 vtyntlisglckagrveeAlelf 23 
                 ++y+ l+++++++gr   A++++
  MMETSP1061-20121228|7875_1 180 YAYTGLLNAYGRSGRAQMAHDFL 202
                 68****************99987 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.071
   TIGR00756   1 vtyntlisglckag 14 
                 vt+++++++ +ka+
  MMETSP1061-20121228|7875_1 222 VTFTAILNAWSKAK 235
                 79*******99985 PP

  == domain 6    score: 7.6 bits;  conditional E-value: 0.00024
   TIGR00756  17 eeAlelfdeMker.givPda 35 
                 ++A++l+++Mk+r gi P+a
  MMETSP1061-20121228|7875_1 242 RKAHRLLHRMKDRyGIQPNA 261
                 59********9999****96 PP

  == domain 7    score: 11.6 bits;  conditional E-value: 1.3e-05
   TIGR00756   2 tyntlisglckagrve...eAlelfdeMker.givPd 34 
                 +y+t++++++++  ++   +Al+lf++M++  g++P+
  MMETSP1061-20121228|7875_1 263 SYSTVLDAYARSTLPDaahKALRLFHDMRDVaGLEPN 299
                 8999999999999998333667888888666688887 PP

  == domain 8    score: 15.1 bits;  conditional E-value: 9.5e-07
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMke 28 
                 +t++ +++++++ grveeA+ l+ e++ 
  MMETSP1061-20121228|7875_1 301 YTCTNVLKAMARGGRVEEAEALLYELIH 328
                 79*********************98865 PP

  == domain 9    score: -0.5 bits;  conditional E-value: 0.089
   TIGR00756  16 veeAlelfdeMke 28 
                 +e A+el+ +M+e
  MMETSP1061-20121228|7875_1 357 PERAEELLFKMQE 369
                 4889999999987 PP

  == domain 10    score: 14.1 bits;  conditional E-value: 2.1e-06
   TIGR00756   1 vtyntlisglckagrveeAlelfdeMker 29 
                 ++ynt++++ +++g++++   l++e++ +
  MMETSP1061-20121228|7875_1 454 IMYNTVMNAWANQGNFSKTNLLYRELCNK 482
                 58**********************98765 PP

  == domain 11    score: -0.9 bits;  conditional E-value: 0.12
   TIGR00756  21 elfdeMkergivP 33 
                 +++++M ++g++ 
  MMETSP1061-20121228|7875_1 521 KVMKSMSDDGLEL 533
                 6888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2521.45
//
Query:       MMETSP1061-20121228|7874_1  [L=748]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   13.7   3.7     0.0026   13.8   1.5    1.6  2  TIGR00603 rad25: DNA repair helicase rad25


Domain annotation for each model (and alignments):
>> TIGR00603  rad25: DNA repair helicase rad25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.5   6.3e-07    0.0026     630     706 ..     160     236 ..     153     261 .. 0.75
   2 ?   -2.5   0.0     0.058   2.4e+02     644     695 ..     305     357 ..     298     374 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.3e-07
   TIGR00603 630 fkvitelkgideeselayaskeeqlellqkvlaasdedaeeekleeetdsvakgakksksslsakavrkagslssls 706
                  ++i el+  d++ +lay+  + +++ l+++l++ +ed +  ++++e+++ ++ ++   s+ ++k+++k+ s +s  
  MMETSP1061-20121228|7874_1 160 EQIILELAEEDNNLNLAYSLLKVHRDALDRILEEVEEDDGASDTDGEFNDEKRRSSSKSSRSKSKSKSKSKSSRSSK 236
                 57899*********************************999999999999877644444444444444444443333 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.058
   TIGR00603 644 elayaskeeqlellqkvla.asdedaeeekleeetdsvakgakksksslsaka 695
                  ++++s++ ql  +++v   ++d+d +++++ ++ +  +++ ++ +++ + + 
  MMETSP1061-20121228|7874_1 305 AMKWQSHTGQLPWVKEVYDnDNDNDNDNDNVGDSGGAETRKKRRKRKRYDLVL 357
                 56788888888888888751466777777787777777776666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 3085.25
//
Query:       MMETSP1061-20121228|7879_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1941.63
//
Query:       MMETSP1061-20121228|7881_1  [L=1176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.10s 00:00:00.57 Elapsed: 00:00:00.54
# Mc/sec: 2874.43
//
Query:       MMETSP1061-20121228|7882_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 2128.32
//
Query:       MMETSP1061-20121228|7876_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.8    3.5   7.2        4.3    2.9   5.0    1.2  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   5.0    0.0011       4.3      40     143 ..     119     223 ..     110     238 .. 0.68

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0011
   TIGR01299  40 eysrrsysrfeeeeddddyyapaetysrgeaaddeeegeasseateghdeedeiyegeyqgipra....esqgkdeivavgapkagvrdelkdregppggeleaerrk 143
                 +  +     f  e+ d +   p    + g++ +dee  ++s + te h   +    g  q  p      es+  +  v  g+pk +v  +   +  +  g++ea+  +
  MMETSP1061-20121228|7876_1 119 QKDQVGNEEFPSEHIDGQVGHPD-VEQGGDTRQDEERPGGSPDGTETHKVRQAAQTGRVQTAPEEgihdESEDLNVEVRGGHPKHAVDHGQ--GVHALQGRVEAKPIR 223
                 55555566677777777666664.44559*******************************9996411113333344455677777554443..222355666666544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1269.83
//
Query:       MMETSP1061-20121228|7883_1  [L=825]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (825 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.12s 00:00:00.51 Elapsed: 00:00:00.64
# Mc/sec: 1701.42
//
Query:       MMETSP1061-20121228|7884_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 438.39
//
Query:       MMETSP1061-20121228|7889_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-05   19.0   0.1    0.00012   18.4   0.0    1.4  1  TIGR00593 pola: DNA polymerase I
     0.0086   14.0   0.0      0.015   13.2   0.0    1.4  1  TIGR02665 molyb_mobA: molybdopterin-guanine dinucleotide biosynthesis protein A
  ------ inclusion threshold ------
      0.095   11.1   4.8       0.25    9.8   1.8    2.1  2  TIGR01410 tatB: twin arginine-targeting protein translocase TatB


Domain annotation for each model (and alignments):
>> TIGR00593  pola: DNA polymerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.7e-08   0.00012     513     596 ..      44     119 ..      23     145 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 8.7e-08
   TIGR00593 513 ylqelskelaeel..akleeeiyelaGeef.nlnSpkQLeevLFekLkLpskkktktgystdaevLekLaekheiiaeilleyRelt 596
                  l ++++e+   +  ++ e+ i+e+  + f nlnSpkQ++++LF + ++          st++e+Le +a  ++i+a+++leyR+ +
  MMETSP1061-20121228|7889_1  44 RLANVEREIRVVIgeREREQGIHETTEKPFnNLNSPKQVSQLLFGRPDM----------STNKETLEGMAG-SNILAKLVLEYRDAK 119
                 4445555555555222346779********55************98666..........566667777776.666677777777654 PP

>> TIGR02665  molyb_mobA: molybdopterin-guanine dinucleotide biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.1e-05     0.015     139     185 ..      36      82 ..      21      83 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.1e-05
   TIGR02665 139 aladsLeaflaagerkvraflarhkaaavefsdekdafaNlNtpedl 185
                 +l dsL+a la+ er +r ++ + + ++   ++++++f NlN+p+++
  MMETSP1061-20121228|7889_1  36 DLVDSLKARLANVEREIRVVIGEREREQGIHETTEKPFNNLNSPKQV 82 
                 6899*****************98888888888999*********986 PP

>> TIGR01410  tatB: twin arginine-targeting protein translocase TatB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.072        98      34      74 ..      37      77 ..      32      83 .. 0.82
   2 ?    9.8   1.8   0.00018      0.25      42      75 ..     115     148 ..     102     150 .] 0.86

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.072
   TIGR01410 34 lvralrklasdvkneldeelkleelkeelkeveklrilnlt 74
                lv  l+  + +v +e++  +++ e ++ ++e  ++ ++nl+
  MMETSP1061-20121228|7889_1 37 LVDSLKARLANVEREIRVVIGEREREQGIHETTEKPFNNLN 77
                57788999999999999999999999999988888887765 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00018
   TIGR01410  42 asdvkneldeelkleelkeelkeveklrilnlta 75 
                 + d+k++l ++lk  +++ee++++++++ ++ ++
  MMETSP1061-20121228|7889_1 115 YRDAKRKLGKALKDRDIREEREQLQQKQQQQQQQ 148
                 6799**********************99888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|7887_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-86  288.4   0.0    1.4e-86  288.1   0.0    1.1  1  TIGR00652 DapF: diaminopimelate epimerase
    1.4e-05   22.4   0.0    4.3e-05   20.8   0.0    1.8  1  TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family


Domain annotation for each model (and alignments):
>> TIGR00652  DapF: diaminopimelate epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  288.1   0.0     7e-90   1.4e-86       2     268 ..      44     325 ..      43     327 .. 0.91

  Alignments for each domain:
  == domain 1    score: 288.1 bits;  conditional E-value: 7e-90
   TIGR00652   2 eFlkmhGlgNdFvlvdevdeelvkeeaelvrkvcdrhtgvgaDgvllvep.sseeadvklrifNsDGSeaemCGNgiRcfakfvyekglkekkelsvetlaglikveveeenkkvkvdmgepkfkkeeiplt.vekeeekeellalev........l.vvdvGnPHlvvfvedvek.ldleelgkllea.heefpegvNvefvevkkedeiklrvyERGageTlaCGtGavAsavvalklgktkkk..vtvhleggeLeievkedg..kvyltGpavlvlegel 268
                  F+k++GlgNdF+l+d++d++ ++ ++e+ +k+c+r++g+g Dgv++  +  se++d+ +ri+NsDGSe+emCGNgiRcfa+f+++ g  + ++++v+tlag+i   +++++ +++vdmgep +k+e++p+t ++++e    ++++++        + +v++GnPH+v+f +d+ek +d e+ g++le+   +fp+++Nvefv+v+++ ++ ++v+ERGag TlaCGtG++A +++a+++gk +    v+v+l+gg+L ie+++d+  kv++tGpa++ ++g++
  MMETSP1061-20121228|7887_1  44 DFSKYEGLGNDFILIDDRDKDAPSLTPEQSEKLCNRNFGIGGDGVIFALKpPSEDYDFSMRIYNSDGSEPEMCGNGIRCFAQFLKDLGADS-ESYQVNTLAGRIIPVMNDDG-TITVDMGEPILKAEDVPTTlAANFEDGISVVEQDLecngknwkVsAVSMGNPHCVIFLDDLEKdIDFESDGPALEScVSAFPAKTNVEFVQVVSDTHLLMKVWERGAGPTLACGTGTCALVIAAIQAGKIPAGnkVRVTLPGGDLFIEWNKDTdnKVFMTGPATYTFSGKA 325
                 7*********************************************987669***********************************9996.********************.******************974455554444444446677775538***************875389********9725789*********************************************999875444***************99999************9986 PP

>> TIGR00654  PhzF_family: phenazine biosynthesis protein, PhzF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.1e-08   4.3e-05      47     188 ..      88     229 ..      44     327 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.1e-08
   TIGR00654  47 TaFllkpvsekadlrlRiFT.PksEldlaGHaTvaslyallevtklevattlvleekvGlvpvtieekdgqlrisleqaapdfepk.lsgesradlakalglteddll...kglpiqllstGletvviplkdeealkklspdlkvla 188
                   F lkp se++d+ +Ri+   +sE +++G   +     +l+ ++   + ++++++ +G + + + + dg +  ++  + p  +++ + +   a++++ + + e+dl    k++ + ++s G +  vi l d+e+      d  +l+
  MMETSP1061-20121228|7887_1  88 VIFALKPPSEDYDFSMRIYNsDGSEPEMCGN-GIRCFAQFLKDLGAD-SESYQVNTLAGRI-IPVMNDDGTI--TVDMGEPILKAEdVPTTLAANFEDGISVVEQDLEcngKNWKVSAVSMGNPHCVIFLDDLEKDIDFESDGPALE 229
                 6799**************972589******7.578888888888888.899********75.3344445666..6666666666540555667899**********97433459999***************997666665555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1443.08
//
Query:       MMETSP1061-20121228|7890_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       355  (0.0865431); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 635.95
//
Query:       MMETSP1061-20121228|7888_1  [L=736]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00039   17.9   0.2    0.00071   17.0   0.1    1.3  1  TIGR01323 nitrile_alph: nitrile hydratase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR01323  nitrile_alph: nitrile hydratase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.7e-07   0.00071      33     152 ..      42     171 ..      29     199 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.7e-07
   TIGR01323  33 eekvgPanGakvvakaWtdpefkerlladataaiaelGfagaqgeel......vvventpev.h....nvvvctlcscypwpvlGlPPeWyksaeyrsrvvrepravlkelgvelpedvevrvwdssaeir 152
                  e ++  nGak +a  W d+ f + +   a+  ++++G++ +++ e+      +v+e  +e+ +    +vv+  +  c+pw       +W  +a+  + v     + ++e+g++ +  + v  wdss ++ 
  MMETSP1061-20121228|7888_1  42 IEALATVNGAKTIATLWEDASFTRGVCGAAPGLAEQYGMTVTSTTEVatapnvTVLEPIAETlKgedpDVVITCVYDCTPWVKAMRKVKWSPKAQVFT-VCIGQEKFFREVGTDSAYIMGVTPWDSSLQVE 171
                 3456789*******************************99877766511111144444333211222378999999*****99999999*85555433.344455899******************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 3349.79
//
Query:       MMETSP1061-20121228|7895_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 361.23
//
Query:       MMETSP1061-20121228|7896_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 409.86
//
Query:       MMETSP1061-20121228|7894_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0083   13.2   0.1      0.009   13.1   0.0    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.2e-06     0.009       2      58 ..      28      89 ..      27     108 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.2e-06
   TIGR02794  2 kavllslvlHvlllillllgsltesvepepeg.g....eiiqAvlvDpaavaqqanrlqqqe 58
                 +v ++++l +l+++l l++++++++e+e+++ +    + ++A++v +a+v++  ++++q+ 
  MMETSP1061-20121228|7894_1 28 IPVGIAIGLVALVIALGLTKFSSKTNEKEAVKvQfvasTPVKATPVKSATVTESGTPISQKT 89
                5899****************9999999****9626689999999998888888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 625.51
//
Query:       MMETSP1061-20121228|7886_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-19   65.9   0.0    4.7e-14   49.8   0.0    2.9  2  TIGR00653 GlnA: glutamine synthetase, type I
    1.7e-11   41.1   0.0    2.4e-08   30.7   0.0    2.2  2  TIGR03105 gln_synth_III: glutamine synthetase, type III


Domain annotation for each model (and alignments):
>> TIGR00653  GlnA: glutamine synthetase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   2.3e-17   4.7e-14      19     269 ..      72     306 ..      66     333 .. 0.80
   2 !   10.1   0.0   2.5e-05     0.052     326     370 ..     354     399 ..     338     414 .. 0.80

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 2.3e-17
   TIGR00653  19 fvDikGklkkv..eipvseleeealeegiaFDgssveGfksieesDlllkpdpetlvivPfraek....vlrvicdvyepvtkepyerdpRsiakraeeelktklgdevyfGpEaEFflfdkvefkeasnssflevdseegewnreveegnkgykikkkgg.YfdvepvDka.kdirrelvlaleelglevevsHHEvataqaEidikfdklvkaaDeivlyKyvvknvakkhGktatFmpKplfgd..ngsGmHvhlslw 269
                 +vD  G +++   ++p+s+ e+     +  FDgss       ++s+++lkp  ++++ +Pfr  +     + v+cd y+p  +e   +++R  a   e++++ +  +ev fG E+EF lf+ +e +                w    +eg  g+  + +g  Y++v p+++    i ++l +a  + g+++  +  Ev ++q+E ++     ++a+D++++ +y+   v +    + t  pKp++    ng+GmH+++s  
  MMETSP1061-20121228|7886_1  72 WVDAVGNTRSKtrTLPASKAESVDSLPKWNFDGSSTDQ-APGDDSEVILKP--QRIFKDPFRPRDdgvsNILVMCDTYTP-SGEALPTNTRAFA---EQYFSGNEDEEVWFGLEQEFTLFNLDERTPL-------------GW----PEG--GMPSRPQGPyYCSVGPENNFgRAITDSLYKACLYAGINISGVNGEVMPGQQEYQVGPCVGIDAGDQLMMSRYILMRVCEDFQVYCTLHPKPIVEGdwNGAGMHTNVSTK 306
                 567777765540045555554333345789*****875.56699***9987..689******987787778899*****9.8899988888876...5667777899****************99976.............23....333..444444544278999988752789999*****************************************************************953359*******9965 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 2.5e-05
   TIGR00653 326 ylaysaknRsaliRiPasanpkak.RiEvRspDpsanpYLafaall 370
                 + +++  nR a++Ri   ++ ++k  +E R p + a pYL    ++
  MMETSP1061-20121228|7886_1 354 NFSFGIANRGASVRIGRDTQDEGKgYFEDRRPSSNADPYLVTGKIM 399
                 578999**********99955555279*************866554 PP

>> TIGR03105  gln_synth_III: glutamine synthetase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   1.2e-11   2.4e-08      17     243 ..      72     307 ..      65     323 .. 0.77
   2 !    8.0   0.0   9.4e-05      0.19     307     348 ..     353     400 ..     342     408 .. 0.81

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 1.2e-11
   TIGR03105  17 fvdllGvakak..lvPvealdalake.gagfaGfavsglglePadadllavpdldsliqlPwkp...eva..wvaadlv.vegkpvelapRvvlkkllaeaaekgftlktGveceffllrreedgklsvaDk..aDklakpcYDqralmrry..dvleeisealnelGwdlYqiDheDanGqfelnfeyaDalttaDrvaffkylvkeiaeeegllatfmPkPfa..drtGnGlhlhlslld 243
                 +vd +G +++k  + P+++ +++ +     f G ++   +++P d+   ++  ++++++ P++p   +v+  +v++d++  +g+++++++R   ++  +  +++  +++ G+e ef l++ +e   l  ++     + + p Y   +  +++   + +++ +a    G+++  ++ e   Gq e +      + + D++++ +y++ ++ e+  + +t+ PkP    d  G G+h+++s  +
  MMETSP1061-20121228|7886_1  72 WVDAVGNTRSKtrTLPASKAESVDSLpKWNFDGSST---DQAPGDD-SEVILKPQRIFKDPFRPrddGVSniLVMCDTYtPSGEALPTNTRAFAEQYFSGNEDE--EVWFGLEQEFTLFNLDERTPLGWPEGgmPSRPQGPYYCSVGPENNFgrAITDSLYKACLYAGINISGVNGEVMPGQQEYQVGPCVGIDAGDQLMMSRYILMRVCEDFQVYCTLHPKPIVegDWNGAGMHTNVSTKS 307
                 578888877762257777777765541345666555...5899764.4456667899999**87333455336789998579**********999998876655..799***********99998888776411456677888888888776324667788888999********************9999********************************862367899*****99764 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 9.4e-05
   TIGR03105 307 alisyggnnRthmvRiP......dagRlelRlaDgaanpYlvsaavla 348
                 +  s+g  nR ++vRi       ++g +e R + + a+pYlv+  +++
  MMETSP1061-20121228|7886_1 353 ENFSFGIANRGASVRIGrdtqdeGKGYFEDRRPSSNADPYLVTGKIMS 400
                 5679************75333223578***************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2121.98
//
Query:       MMETSP1061-20121228|7901_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1697.00
//
Query:       MMETSP1061-20121228|7903_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 470.57
//
Query:       MMETSP1061-20121228|7899_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 868.93
//
Query:       MMETSP1061-20121228|7904_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.30
# Mc/sec: 281.58
//
Query:       MMETSP1061-20121228|7898_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 2993.51
//
Query:       MMETSP1061-20121228|7911_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 413.18
//
Query:       MMETSP1061-20121228|7900_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-23   81.7   0.0    1.3e-23   81.4   0.0    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.3e-18   65.2   0.0    1.8e-18   64.7   0.0    1.2  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.5e-18   65.2   0.0    2.1e-18   64.7   0.0    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
      3e-17   60.7   0.0    4.1e-17   60.3   0.0    1.1  1  TIGR02415 23BDH: acetoin reductases
    3.3e-15   53.3   0.1      1e-14   51.7   0.0    1.6  2  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    7.2e-12   43.0   0.1      1e-11   42.5   0.1    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    8.7e-11   39.6   0.1      4e-10   37.4   0.0    1.9  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    5.7e-10   37.1   0.0    7.6e-10   36.7   0.0    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    3.1e-09   34.4   0.1    4.7e-09   33.8   0.1    1.2  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    4.1e-08   30.7   0.0    4.7e-08   30.6   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
      5e-07   27.1   0.0    7.5e-07   26.5   0.0    1.2  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
     0.0005   17.1   0.1    0.00083   16.4   0.0    1.3  1  TIGR02685 pter_reduc_Leis: pteridine reductase
     0.0038   14.6   0.0     0.0052   14.1   0.0    1.3  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
  ------ inclusion threshold ------
      0.031   11.7   0.1      0.053   10.9   0.1    1.4  1  TIGR03619 F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   4.6e-26   1.3e-23       2     191 ..      17     224 ..      16     251 .. 0.80

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 4.6e-26
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle....eeaaeaaakeleea..gg....evlalkadvtkeeeiadlieavaaefgsldiLvnnAGiq.hvap...ieefptekfekiiavnltsafhtiraalpimkk.qgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEv...AetgitanaicPgyvrtpLvekq 191
                 k+a+vtGa+sGig+a a e+a  G+++ + d +    ++a++ ++k++++a  g+    +++  ++dv++e++++dl ++v ++ g+   L nnAGiq  va    +    t++  + ++ n  ++++   a lp+mk+ ++ G ++n +s +g    +   +Y+ +K +l  +t  l  E     + +++a  + Pg+v+t +  k 
  MMETSP1061-20121228|7900_1  17 KTAVVTGASSGIGRAAALEFASRGMNIWMIDNDveelKDATALVQKRCAAArrGAdpiqTIKGRVVDVSDEQAMKDLADEVFDRGGKCHFLFNNAGIQpSVAEggsLAASSTDTMRRTLDTNFYGPVQGCAAFLPKMKQvDEEGIVVNTGSKQGITMPPGNLPYNVSKAALKCYTEGLEHELrnsCNGKLRAALLIPGWVNTSILLKN 224
                 9***************************99888434433333333444333113311113455689********************************5577522266667888888999******************945689********************************9999872224568*************987665 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   6.2e-21   1.8e-18       3     215 ..      16     237 ..      14     283 .. 0.79

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 6.2e-21
   TIGR03971   3 GkvalitGaarGqGraeavrlaaeGadiiaidl.ceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGv....lsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaey...girvnsihPtsvdtamiepeamrelfa.....k 215
                 Gk a++tGa+ G Gra+a+ +a+ G +i  id  +e+l+d  +      +   + a  +++    +  r++dv + +++++  +e  ++ G+   + +naG+    ++ g++   s +  + +ld+n+ G  + + a +P++ + ++ G ++ ++s  g+   pg+  y ++k  l   t+ l +el +    ++r   + P  v+t+++ +++  e++a     +
  MMETSP1061-20121228|7900_1  16 GKTAVVTGASSGIGRAAALEFASRGMNIWMIDNdVEELKDATALVQKRCAAARRGADPIQT----IKGRVVDVSDEQAMKDLADEVFDRGGKCHFLFNNAGIqpsvAEGGSLAASSTDTMRRTLDTNFYGPVQGCAAFLPKMKQVDEEGIVVNTGSKQGITMPPGNLPYNVSKAALKCYTEGLEHELRNScngKLRAALLIPGWVNTSILLKNSRSEALAdgrekD 237
                 9*****************************9953667766665555555555555555554....455678******************************8333134455666677889999***************************************************************965322279*************999999988888544331 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   7.3e-21   2.1e-18       1     185 [.      19     220 ..      19     232 .. 0.80

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 7.3e-21
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelke......agv....kaaavkldvsdeeevkelveeveeelgeidilvnnAGit....rDklllrmkeedwdevikvnLkgvfnvtkavlkkmik.krsGriinissvvgllGnagqanYaasKaGligltkslakElasr...nitvnavaPGfietdm 185
                 a+vtGas giG+a a+++a++g+++++ ++  ee ++++++ +++      +g+    + ++ ++dvsde+++k+l +ev ++ g+   l nnAGi     + + l   + +  ++ +++n  g  + + a l km +   +G ++n +s  g++  +g   Y  sKa l   t+ l +El +     +++  + PG+++t +
  MMETSP1061-20121228|7900_1  19 AVVTGASSGIGRAAALEFASRGMNIWMIDNDVEE-LKDATALVQKrcaaarRGAdpiqTIKGRVVDVSDEQAMKDLADEVFDRGGKCHFLFNNAGIQpsvaEGGSLAASSTDTMRRTLDTNFYGPVQGCAAFLPKMKQvDEEGIVVNTGSKQGITMPPGNLPYNVSKAALKCYTEGLEHELRNScngKLRAALLIPGWVNTSI 220
                 79************************99775554.333333332211111133311113567899******************************96333256678888889999*********************983469*************************************99653222699999******9976 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.4e-19   4.1e-17       1     194 [.      17     227 ..      17     244 .. 0.79

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1.4e-19
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtka..........vavkldvsdkseveeaveqaveklGeldvlvnnaGvalv....tpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakk..g.itvnayaPGivktemreeidek 194
                 k+a+vtGa+ GiG+a a  +a  G+++ + d + e++k+++  ++++   a          +  ++dvsd ++++++ ++  ++ G+ + l nnaG++++     +++ ++ +++ +  + n  g + G  a   k+k+++++G ++n  s  g++  p    y  +k a++ +t    +eL ++  g        PG v+t++  +  + 
  MMETSP1061-20121228|7900_1  17 KTAVVTGASSGIGRAAALEFASRGMNIWMIDNDVEELKDATALVQKRCAAArrgadpiqtiKGRVVDVSDEQAMKDLADEVFDRGGKCHFLFNNAGIQPSvaegGSLAASSTDTMRRTLDTNFYGPVQGCAAFLPKMKQVDEEGIVVNTGSKQGITMPPGNLPYNVSKAALKCYTEGLEHELRNScnGkLRAALLIPGWVNTSILLKNSRS 227
                 89***************************9998665555554444433222111121111133469******************************9765222268***********************************************************************9999976511313344467888888776555555 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   3.5e-17     1e-14     415     576 ..      17     190 ..      12     215 .. 0.85
   2 ?   -0.9   0.0      0.29        84     277     328 ..     276     325 ..     260     327 .] 0.83

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 3.5e-17
   TIGR02632 415 rvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava........lkldvtdeeavkaafaevalayGGvdivvnnaGiavsk....pleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahl 576
                 + a+vtG++sGiGr+ a+ ++++G  + ++d d e++++  a ++++  a +  a         ++dv de+a+k   +ev    G    + nnaGi  s      l + ++++  ++ld +  G    +      +++ +  g +v ++sk +++  +++l y+ +kaa +  
  MMETSP1061-20121228|7900_1  17 KTAVVTGASSGIGRAAALEFASRGMNIWMIDNDVEELKDATALVQKRCAAARRGAdpiqtikgRVVDVSDEQAMKDLADEVFDRGGKCHFLFNNAGIQPSVaeggSLAASSTDTMRRTLDTNFYGPVQGCAAFLPKMKQVDEEGIVVNTGSKQGITMPPGNLPYNVSKAALKCY 190
                 789**********************************99999888887776666677777777789*********9999999999999*********8775112245666788899999999999888777777889999999**************************97655 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.29
   TIGR02632 277 scPdhflrtkirPlvidvaPaaedleelkaklkegleayredyaryyerhrr 328
                  cPd  +      l + ++ +  +++  +  l++ +++y+e+++++ + +++
  MMETSP1061-20121228|7900_1 276 VCPDNDVDRNTDNLRMTWTMQDITMD--RPPLSRWHDSYKEEFTEFLHANKK 325
                 69999999999999999988877766..5689999**********9999887 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.1   3.4e-14     1e-11       2     190 ..      20     224 ..      19     232 .. 0.75

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 3.4e-14
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyr..sdradaeesvaaira...qggn.arllk...fdvadrvavrevleadiaehgayygvvlnagiardaaf.palseedwdavietnldgfynvihplv..mp.mirarkggriitlasvsgvmgnrgqvnysaakagligatkalavel...akrkitvnciapglidtemvaev 190
                 +vtgas gigra al++a+ g++i +  +  ++  da + v++  a   +g++  + +k    dv+d +a++++ ++  ++ g  + +  nagi+   a   +l+    d++ +t   +fy  ++ +   +p m ++ + g ++   s  g+    g++ y  +ka l   t  l  el    + k+    + pg ++t ++ + 
  MMETSP1061-20121228|7900_1  20 VVTGASSGIGRAAALEFASRGMNIWMIDNdvEELKDATALVQKRCAaarRGADpIQTIKgrvVDVSDEQAMKDLADEVFDRGGKCHFLFNNAGIQPSVAEgGSLAASSTDTMRRTLDTNFYGPVQGCAafLPkMKQVDEEGIVVNTGSKQGITMPPGNLPYNVSKAALKCYTEGLEHELrnsCNGKLRAALLIPGWVNTSILLKN 224
                 69**********************76433112334444444332221112322133333333799**99999999988899999999*******9987752578888888887777778*****9996224536678889**************************************93333569999999******9988665 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   1.4e-12     4e-10       5     188 ..      16     218 ..      13     232 .. 0.72
   2 ?   -0.6   0.0      0.55   1.6e+02     188     215 ..     283     310 ..     274     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 1.4e-12
   TIGR01832   5 GkvalvtGantGlGqgiavglaeaGadivgvg..iselsetqekvealGrk.......flslk...adladeeaakalvdeaveeagkidilvnnaGi...irredavefsekd.wddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvp....sytasksavaGltkllanewakk...ginvnaiaPGylet 188
                 Gk+a+vtGa++G+G++ a+ +a+ G +i  ++  + el+++++ v++  +        ++++k   +d++de+a+k l de+ ++ gk   l nnaGi   +    +++ s +d     l++n+    + + a+  k+ +  ++g ++n  s      Gi +p     y  sk a+   t  l  e+ ++    ++   + PG+++t
  MMETSP1061-20121228|7900_1  16 GKTAVVTGASSGIGRAAALEFASRGMNIWMIDndVEELKDATALVQKRCAAarrgadpIQTIKgrvVDVSDEQAMKDLADEVFDRGGKCHFLFNNAGIqpsVAEGGSLAASSTDtMRRTLDTNFYGPVQGCAAFLPKMKQVDEEGIVVNTGSK----QGITMPpgnlPYNVSKAALKCYTEGLEHELRNScngKLRAALLIPGWVNT 218
                 9**************************9777544788999888887654321112122344434448******************************94333344455555554246678888888888899999898888899999998874....34444423225888888888888888888754321134555567777766 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.55
   TIGR01832 188 tnntealradekrnaaileriPagrwGe 215
                   nt++lr   + ++  ++r P +rw  
  MMETSP1061-20121228|7900_1 283 DRNTDNLRMTWTMQDITMDRPPLSRWHD 310
                 579******99999999*********75 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   2.6e-12   7.6e-10       1     188 [.      17     221 ..      17     232 .. 0.79

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 2.6e-12
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykv..vanvapneerakewlqekeve...gfd.vavvk...advssfeeakaavakveaelGpvdvlvnnaGitrd....avfkkmtkeqWeevidtnlnsvfnvtrpviegmler.gfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakk...gvtvnviaPGyiatemv 188
                 + a+vtG++ GiG+a + ++a+ G+++  + n + + + a+++ q++ +    g d ++ +k   +dvs+ ++ k+  ++v +  G+   l nnaGi         ++  +++     +dtn+ +  +     + +m++  + G ++n  s  G+    G   y  +ka l  +t  l +e  ++    +    + PG+++t + 
  MMETSP1061-20121228|7900_1  17 KTAVVTGASSGIGRAAALEFASRGMNIwmIDNDVEELKDATALVQKRCAAarrGADpIQTIKgrvVDVSDEQAMKDLADEVFDRGGKCHFLFNNAGIQPSvaegGSLAASSTDTMRRTLDTNFYGPVQGCAAFLPKMKQVdEEGIVVNTGSKQGITMPPGNLPYNVSKAALKCYTEGLEHELRNScngKLRAALLIPGWVNTSIL 221
                 579*********************997435666667777777777655431112222444441126999999999*********************9754111157889999999999******99999999*****98526799*********************************999654311157778899999999875 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   1.6e-11   4.7e-09       3     194 ..      16     226 ..      14     239 .. 0.77

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 1.6e-11
   TIGR03206   3 dkvaivtgggggiggaicrrfaeegakvavldlnae....aaekvaaairekggka...eava...vditdrasvdaavaaaeealgpvdvlvnnagwdvl....kpflktekaewerliainltgalymhhavlkgmver.kagrivniasdaarvgssgeavyaackgglvafsktlarel...arhgitvnvvcpgptdtall.edvk 194
                 +k+a+vtg + gig a  + fa  g ++ ++d + e    a+  v ++ +++   a   ++++   vd++d+++++     + +  g    l nnag +      +++  +   +  r +  n++g +    a l+ m +  ++g +vn  s  + +   g+  y + k  l +++  l  el   +  ++   ++ pg  +t++l ++  
  MMETSP1061-20121228|7900_1  16 GKTAVVTGASSGIGRAAALEFASRGMNIWMIDNDVEelkdATALVQKRCAAARRGAdpiQTIKgrvVDVSDEQAMKDLADEVFDRGGKCHFLFNNAGIQPSvaegGSLAASSTDTMRRTLDTNFYGPVQGCAAFLPKMKQVdEEGIVVNTGSKQGITMPPGNLPYNVSKAALKCYTEGLEHELrnsCNGKLRAALLIPGWVNTSILlKNSR 226
                 69*****************************9876511114444554444433333111333233389999999999889999999***********874312224677778888999********************875267999******************************9987761114557888999999999986514444 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.6e-10   4.7e-08       3     183 ..      19     199 ..      17     273 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.6e-10
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeie.....aevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrek.elsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek 183
                 ++vtGas G+Gr+ a e+a+    +g+ + ++  + e Lk++ a ++     a + a  +++    +  ++  e+ +k l ++   ++ +   l+nnaG    v+ +     s ++ +++  d+n +  v   + +l k+k++   e +vvn  s   i   ++   Y  skaa   +   L  e +
  MMETSP1061-20121228|7900_1  19 AVVTGASSGIGRAAALEFAS----RGMNIWMIDNDVEELKDATALVQkrcaaARRGADPIQTIKGRVVDVS-DEQAMKDLADEVFDRGGKCHFLFNNAGIQPSVAEGGSlAASSTDTMRRTLDTNFYGPVQGCAAFLPKMKQV-DEEGIVVNTGSKQGITMPPGNLPYNVSKAALKCYTEGLEHELR 199
                 79*****************9....67888888888888888888777666555566666777665555555.3556666666666666677789*****88877775441459999*************************43.67899************************99999888877765 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.6e-09   7.5e-07       6     188 ..      17     217 ..      13     233 .. 0.76

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2.6e-09
   TIGR03325   6 evvlvtggasglgralvdrfvaegarvavldksaagleeleaah..........gdkvvgvegdvrllddh...keavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpal..vasrgsviftvsnagfypngggalytaakhavvglvkelayel....apyvrvngvapggls 188
                 + ++vtg +sg+gra    f + g ++ ++d+ +++l++  a            +d + +++g v  ++d+   k+ +++  +  gk + l +nagi    ++   +     d ++    + n  g + +  a lp +  v+  g v+ t s  g+    g   y  +k a+      l +el      ++r   + pg ++
  MMETSP1061-20121228|7900_1  17 KTAVVTGASSGIGRAAALEFASRGMNIWMIDNDVEELKDATALVqkrcaaarrgADPIQTIKGRVVDVSDEqamKDLADEVFDRGGKCHFLFNNAGIQPSVAEGGSLAASSTD-TMRRTLDTNFYGPVQGCAAFLPKMkqVDEEGIVVNTGSKQGITMPPGNLPYNVSKAALKCYTEGLEHELrnscNGKLRAALLIPGWVN 217
                 6789****************************99999875443201111111214567889997777666512266788999999************9998888888777665.56777899999***********9833457899***********9999999*******9988888877771111345666666666665 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.8e-06   0.00083       3      93 ..      18     112 ..      16     129 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.8e-06
   TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsa..eaasslaaelna..eransav.vvkadlsnsasllssceeiidacfrafGrcdvlvnnas 93 
                 +a+vtGa+  iGr+ a ++ ++G ++ +  +  +  ++a++l+++  a  +r    + ++k+ +  ++   ++ +++ d  f   G+c  l nna 
  MMETSP1061-20121228|7900_1  18 TAVVTGASSGIGRAAALEFASRGMNIWMIDNDVEelKDATALVQKRCAaaRRGADPIqTIKGRVVDVSD-EQAMKDLADEVFDRGGKCHFLFNNAG 112
                 69***********************98877665522699999987654113433333256776666654.567899******************95 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.8e-05    0.0052       4     132 ..      17     157 ..      14     207 .. 0.55

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.8e-05
   TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaa...ks.lglp...kdsytilk...ldlasldsvrkfveqfresgrsldalvcnaavylpllkep...lfsadgyelsvatnhlghfllsnllledlkksd 132
                 +t+++tgassg+g aaa  ++++g   + m   d+e  + a+   ++    +   +d    +k   +d++  ++++ + ++  + g + + l  na +   +++       s+d    ++ tn +g    +  +l  +k+ d
  MMETSP1061-20121228|7900_1  17 KTAVVTGASSGIGRAAALEFASRG-MNIWMIDNDVEELKDATalvQKrCAAArrgADPIQTIKgrvVDVSDEQAMKDLADEVFDRGGKCHFLFNNAGIQPSVAEGGslaASSTDTMRRTLDTNFYGPVQGCAAFLPKMKQVD 157
                 699*********************.666666655554333220002201111100222222222226666666666666666666666666666666665555443111234455666666666666666666666666654 PP

>> TIGR03619  F420_Rv2161c: probable F420-dependent oxidoreductase, Rv2161c family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00018     0.053     163     236 ..      22      98 ..      13     109 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00018
   TIGR03619 163 gGns.....eaalrRaarlgdGwlplglagveelaeaveelrelaaeagrdpdavevvlvrkdlegdadavaedlaala 236
                  G+s     +aal+ a r  + w+  +  +veel++a++ +++++a+a r  d+++ +  r+ + +d++a+++ ++++ 
  MMETSP1061-20121228|7900_1  22 TGASsgigrAAALEFASRGMNIWMIDN--DVEELKDATALVQKRCAAARRGADPIQTIKGRVVDVSDEQAMKDLADEVF 98 
                 3444477778999999999999*9988..****************************9996666666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1269.42
//
Query:       MMETSP1061-20121228|7905_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     8e-128  425.1   0.4   1.5e-127  424.2   0.3    1.5  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    3.6e-60  202.1   0.0    2.7e-58  195.9   0.0    2.0  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    3.7e-54  182.3  17.9    2.4e-47  159.8   0.5    2.0  2  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    3.3e-53  178.9   4.0    4.5e-53  178.5   2.8    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
  ------ inclusion threshold ------
      0.035   10.4   0.0       0.06    9.6   0.0    1.3  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.2   0.3  1.9e-130  1.5e-127       2     437 .]      85     537 .]      84     537 .] 0.85

  Alignments for each domain:
  == domain 1    score: 424.2 bits;  conditional E-value: 1.9e-130
   TIGR01349   2 ikmPaLsPtmeeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvp.egtkdvpvnkliavlveekedvedavknyklessasapkpkekaeqsaeesaesakseasaekakessseaeaskkeskdrifasPlAkklAkekgidLsavkGsGPngRivkkDiesfvpk...............kkesaqeaaaaktpatk.................kaaapvetgeyedvplsniRkviakRLleskqtiPhyylsvevnvdkllklrkelnaaaeervklsvnDlivkAvalAlrevPevnsswtd..dvirkyknvDisvAvaipaGlitPivrnaeakgleeisnevkelakkArenkLkpeefqgGtftisnlGmlgikqFaaiinpPqaailavgasedkavvk.....nkeekglevasilsvtlsvDHRviDGavgAeflkelkkllenPielll 437
                 + +PaLsPtme+G++akw+  eG++ ++G via ietDkAt+d+e+q++g+lakil + + + d+pv+++ia++vee+edv+ a+++y ++++ sa  + +  +        +++++++  +a++s++       +++   +  P A++lA++kg+d + ++GsG  gR++k D+  +                  +         a++p+++                 +  +    g yedvp++n+Rkv+akRL++sk+ +P  y s+ev++d++lklrk l +     +k+svnD++v+ + lAlr+vPevn ++    d++   + vDis+Avaip+GlitPi+ n+++ gl+eis +vk+la +Are+kL+pee+qgGtf+isnlGm+gi++F+ai+npPqaailavg   ++ v +     ++e+   ++ +i++  ls+D Rv+D a++A f++++++++++P  lll
  MMETSP1061-20121228|7905_1  85 VGFPALSPTMESGTIAKWEIAEGEEFSAGSVIASIETDKATMDFEAQDDGVLAKILKDgADATDLPVGTPIAIIVEEPEDVA-AFADYVVSEEESAGVAGASIP--------ASEAPSASAEAPTSAAVIG---GSAG-TSLLLPSARFLAESKGLDATGLTGSGKGGRVTKGDVLAALRDgtpmpalvkaseegpE--------LATAPPAAaaavvapkvssgpaedlPLPEIDTYGTYEDVPNNNMRKVVAKRLTASKREVPTCYTSMEVELDNVLKLRKTLLNDH--DIKVSVNDIVVRCSSLALRDVPEVNGKYDPksDTVSLQDSVDISIAVAIPNGLITPIIPNTDKLGLSEISDKVKDLAGRAREGKLAPEEYQGGTFCISNLGMFGIDEFTAIVNPPQAAILAVGGGVRRIVPTpyvdgAEEQAKPAIKTIMTARLSSDRRVVDEATAALFMAAFRHYINKPELLLL 537
                 679****************************************************986346789******************.9****9999966655554444........2333333334444444443...3333.34688********************************998877787875554444332........2333332234555555777777664333334459********************************************996544..8***************************877799******************************************************************************************999976432222245556679***********************************99886 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.9   0.0   3.3e-61   2.7e-58       3     402 ..      85     537 .]      83     537 .] 0.79

  Alignments for each domain:
  == domain 1    score: 195.9 bits;  conditional E-value: 3.3e-61
   TIGR01347   3 ikvPelaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdt..vesgevlaelee..............ssaaaeaasekskeekeekaaakaekakeaaekk.................kalspaarklakeegidleavektkktgrvtkedivkkeekk..............asaakeaaakaakaaena..................atrseeRvkmtRlrqriaerLleaknstamLttFnevdmsavmelRkkykeefekkhgvklGFmsffvkavvealkefPevnaeidg..ddivykkylDisvavstdkGLvvPvvRdadalsladiekeikelakkaregklaledltgGtFtitnGGvfGsllstPiinppqsaiL....GmhaikeRPvavn....gkieirPmmYlaLsYDhRliDGkeavtFLvkikelledperlll 402
                 +  P+l+  +  +t+a+we + G+  + + +i+ +etDk +++ +++ dGvl+++l++  d     +g+ +a++ e              +              +e++ +a a+  +++a+++                 + l p+ar la+++g+d+  +++++k grvtk d+ ++ +                + a++++aa+aa     +                  +  + e v+ + +r+ +a+rL  +k ++    t  ev++ +v +lRk     + ++h++k+    + v+ +  al+++Pevn++ d   d + +++ +Dis+av+ ++GL++P++ ++d+l+l +i  ++k+la +aregkla e+ +gGtF i+n G+fG    t i+nppq+aiL    G+  i   P +       k  i+ +m   Ls D R++D   a  F+   ++ +++pe lll
  MMETSP1061-20121228|7905_1  85 VGFPALSPTMESGTIAKWEIAEGEEFSAGSVIASIETDKATMDFEAQDDGVLAKILKDGADAtdLPVGTPIAIIVEepedvaafadyvvsE--------------EESAGVAGASIPASEAPSAsaeaptsaaviggsagtSLLLPSARFLAESKGLDATGLTGSGKGGRVTKGDVLAALRDGtpmpalvkaseegpELATAPPAAAAAV----VapkvssgpaedlplpeidTYGTYEDVPNNNMRKVVAKRLTASKREVPTCYTSMEVELDNVLKLRKT----LLNDHDIKVSVNDIVVRCSSLALRDVPEVNGKYDPksDTVSLQDSVDISIAVAIPNGLITPIIPNTDKLGLSEISDKVKDLAGRAREGKLAPEEYQGGTFCISNLGMFGIDEFTAIVNPPQAAILavggGVRRIVPTPYVDGaeeqAKPAIKTIMTARLSSDRRVVDEATAALFMAAFRHYINKPELLLL 537
                 55799999************************************************98665412679******998565555554333221..............2222111111111111111122233455666666668999******************************98876543233344332322332233333322222....02223456666666665544557789***************************************96....7889*****************************9754678899**********************************************************************************66666788888888755221123346779999*****************************9987 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   7.2   1.1e-10     9e-08       5     132 ..      85     216 ..      82     219 .. 0.83
   2 !  159.8   0.5   2.9e-50   2.4e-47     267     567 ..     213     528 ..     210     534 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.1e-10
   TIGR02927   5 vkmpalGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspaaGvlleikaeeddtve..vGgvlaiiGeegeagsedaeapaepeeep....aeeppkeepkkaaeapaeaaaqaqgsgeatevemp 132
                 v  pal  ++  Gt+++w  a+G+   +   +  + tdk   +  +   Gvl +i  +  d+ +  vG+ +aii ee e+ ++ a+    +ee +    a  p  e+p+++aeap+  +a   g++++t +++p
  MMETSP1061-20121228|7905_1  85 VGFPALSPTMESGTIAKWEIAEGEEFSAGSVIASIETDKATMDFEAQDDGVLAKILKDGADATDlpVGTPIAIIVEEPEDVAAFADYVVSEEESAgvagASIPASEAPSASAEAPT--SAAVIGGSAGTSLLLP 216
                 789****************************************************998877765449*************988887666555543222256678888999889998..5555667778888887 PP

  == domain 2    score: 159.8 bits;  conditional E-value: 2.9e-50
   TIGR02927 267 yvtplvrklakekGvdlssvkGtGvGGrirkqdvlaaaea..........aee.akeaaaaeaaaaapaapaaakka.......pepekaklrGttqkv..nrirqitakktveslqisaqltqvhevdvtrvaalrarakaefaekeGvnltflpffvkavvealkahpnvnasyneetkevtyhdaehlgiavdtprGllspviknagdlslpglakaiadlaarardnklkpdelsGgtftitniGseGalfdtpilvppqaailGtGaivkrprvikdedGne...siairsvvylpltydhrlvdGadagrflttikkr 567
                  + p  r la+ kG+d + ++G+G GGr+ k dvlaa ++          +ee ++ a+a  aaaaa  ap     +       p pe     Gt + v  n +r+++ak++  s +      + +ev++  v +lr+   ++      ++++    +v+    al+  p+vn  y+ ++  v+  d+++++iav  p+Gl++p+i n++ l l++++ +++dla rar++kl p+e  Ggtf i+n+G  G    t i++ppqaail +G  v+r +     dG+e     ai++++   l+ d r+vd a a+ f+ + ++ 
  MMETSP1061-20121228|7905_1 213 LLLPSARFLAESKGLDATGLTGSGKGGRVTKGDVLAALRDgtpmpalvkaSEEgPELATAPPAAAAAVVAPK---VSsgpaedlPLPEI-DTYGTYEDVpnNNMRKVVAKRLTASKREVPTCYTSMEVELDNVLKLRKTLLNDHD----IKVSVNDIVVRCSSLALRDVPEVNGKYDPKSDTVSLQDSVDISIAVAIPNGLITPIIPNTDKLGLSEISDKVKDLAGRAREGKLAPEEYQGGTFCISNLGMFGIDEFTAIVNPPQAAILAVGGGVRRIVPTPYVDGAEeqaKPAIKTIMTARLSSDRRVVDEATAALFMAAFRHY 528
                 5678899*****************************975411111111102220222222223333333333...22332344433333.3579999876589***************999999*************98777665....555555899*****************************************************************************************************************9999966655556655111468*************************988765 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.5   2.8   5.5e-56   4.5e-53     175     585 ..     103     535 ..      84     537 .] 0.79

  Alignments for each domain:
  == domain 1    score: 178.5 bits;  conditional E-value: 5.5e-56
   TIGR01348 175 lvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGd..kvktGdlilvlevegaapaaaeapakaeaaaaapaaeae..eaaaapaaakaeakapvdantendakvdhaaPavrrlarelGvdlskvkgtgkkGrilredvqkfvkeav......................kraeaaaaaaaggipgllPlPkvdfskfGeveevelsrikkisganlarnWvmiPhvtqfdkaditelealrkqqneeaakekegvkltvlaillkavaaalkklPkfnasldedgerlilkkyvniGvavdtPnGllvPvikdvdrkgivelarelsdlakkardkkltademqGacftisslGgiGgtaftPivnaPevail....GvsksalePvWdgk..efeP..rlllPlslsydhrvidGadaarflkylselladirrl 585
                  +  G++ sa+  +  +e+dka+++  a+  Gv+ ++  +  d  ++++G  i ++  e   + aa a+   + + +a  a a+  ++ a++a+a+a ++a+v  ++   +      P+ r la   G+d + + g+gk Gr+++ dv +  ++                          a  a+  ++g+ ++ lPlP  + + +G+ e+v+   ++k+ ++ l+ +   +P      + ++ ++ +lrk +      + +++k+ v  i+++ ++ al+++P+ n   d++++++ l++ v+i +av  PnGl+ P+i + d+ g+ e++ ++ dla++ar++kl ++e qG++f is+lG  G  +ft ivn P+ ail    Gv +    P  dg   + +P  + ++   ls d rv+d a aa f+    + ++ + +l
  MMETSP1061-20121228|7905_1 103 EIAEGEEFSAGSVIASIETDKATMDFEAQDDGVLAKILKDGADatDLPVGTPIAIIVEE-PEDVAAFADYVVSEEESAGVAGASipASEAPSASAEAPTSAAVIGGSAGTSL---LLPSARFLAESKGLDATGLTGSGKGGRVTKGDVLAALRDGTpmpalvkaseegpelatappaaAAAVVAPKVSSGP-AEDLPLP--EIDTYGTYEDVPNNNMRKVVAKRLTASKREVPTCYTSMEVELDNVLKLRKTLL-----NDHDIKVSVNDIVVRCSSLALRDVPEVNGKYDPKSDTVSLQDSVDISIAVAIPNGLITPIIPNTDKLGLSEISDKVKDLAGRAREGKLAPEEYQGGTFCISNLGMFGIDEFTAIVNPPQAAILavggGVRRIVPTPYVDGAeeQAKPaiKTIMTARLSSDRRVVDEATAALFMAAFRHYINKPELL 535
                 566789999999999********************998777773347899877655333.3333333333333333333333330033333444445455544444444444...48********************************99988777799999999*998864432211122222223333.6778999..5568****************************988777788888888888776.....899************************************************************************************************************************55555566677899999744555644789999*****************99888777766665 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   7.3e-05      0.06     525     571 ..      96     142 ..      72     149 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 7.3e-05
   TIGR01108 525 aGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvk 571
                 +G+i k ++ eG+e ++G v+  +e+ k  ++ +a  +G++++il  
  MMETSP1061-20121228|7905_1  96 SGTIAKWEIAEGEEFSAGSVIASIETDKATMDFEAQDDGVLAKILKD 142
                 79****************************************98744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 1968.84
//
Query:       MMETSP1061-20121228|7912_1  [L=1273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.13s 00:00:00.69 Elapsed: 00:00:00.39
# Mc/sec: 4308.26
//
Query:       MMETSP1061-20121228|7913_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.44
# Mc/sec: 2300.81
//
Query:       MMETSP1061-20121228|7908_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.50
# Mc/sec: 1837.29
//
Query:       MMETSP1061-20121228|7915_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 975.78
//
Query:       MMETSP1061-20121228|7916_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 422.37
//
Query:       MMETSP1061-20121228|7914_1  [L=810]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-05   20.5   5.1      8e-05   19.5   0.1    2.5  3  TIGR00464 gltX_bact: glutamate--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00464  gltX_bact: glutamate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.7   0.9    0.0049        20     381     422 ..     439     481 ..     417     508 .. 0.49
   2 !   19.5   0.1   1.9e-08     8e-05     100     186 ..     613     700 ..     611     711 .. 0.87
   3 ?   -3.8   0.0      0.23   9.4e+02     174     188 ..     729     743 ..     723     744 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.0049
   TIGR00464 381 akkkl.ekkevkevleklkkklealeeltaeevesaikevaee 422
                 ++++   +k+++++ +k+++  e+l++++ ++ ++  k+  ++
  MMETSP1061-20121228|7914_1 439 TVTNSkINKQIQKLAKKIESFRERLQQQQRQQHQHQQKQQHQQ 481
                 2222112233333333333333333333333322222222222 PP

  == domain 2    score: 19.5 bits;  conditional E-value: 1.9e-08
   TIGR00464 100 skEeLeklreeqkakketprYdrkcrnleeeeiekkl.akgekpvvRlkipeeaevsfnDlvrgeiklenselddlvilksdglptYn 186
                 s++e e+lr e k k+ + r ++  r+l+e   ++k  ++ +k ++ +  p++++v+++D ++ +++ + ++l+d+ + ++d lp   
  MMETSP1061-20121228|7914_1 613 SDDEAERLRLERKIKQVQSRSQNSLRQLRERLLQRKTsDHSTKSTLGVLPPTHKRVVWKDGMKSQVTRNRKKLEDVCLFREDDLPSAA 700
                 667889999999999999**********9998776551677899***************************************99755 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 0.23
   TIGR00464 174 lvilksdglptYnla 188
                 lv++++ g pt+nl+
  MMETSP1061-20121228|7914_1 729 LVLVQAGGNPTFNLC 743
                 799**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       689  (0.167967); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.17s 00:00:00.67 Elapsed: 00:00:00.53
# Mc/sec: 2017.19
//
Query:       MMETSP1061-20121228|7922_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 729.08
//
Query:       MMETSP1061-20121228|7923_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|7926_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 865.26
//
Query:       MMETSP1061-20121228|7927_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    5.2   9.7        1.6    4.8   6.7    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.7    0.0004       1.6     309     400 ..      26     100 ..       5     152 .. 0.37

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0004
   TIGR02442 309 Rrrrkpfeeeqekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavs 400
                 R+ ++pf ++ +k +++++  ++ ++++++ +d+            ++++++++++++++++ +a++      +v++++a +i r ++++++
  MMETSP1061-20121228|7927_1  26 RQYKNPFGDKVGKGPSSRNGPSQGRTSKSKGNDNT-----------NHKKSNNNSNNNSNNNTKAQK------QVQSTTAKQIQRNQKIVMA 100
                 11122222221111111111111111111111111...........111111111111111111111......1222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       478  (0.116529); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 730.65
//
Query:       MMETSP1061-20121228|7929_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|7917_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-48  162.9   0.0      5e-28   95.8   0.0    2.1  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    1.3e-38  130.6   0.0    2.7e-19   66.9   0.0    2.1  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    3.5e-38  129.4   0.0    3.5e-21   73.4   0.0    2.3  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    4.1e-38  129.2   0.0    4.8e-20   69.6   0.0    2.1  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    3.2e-28   96.2   0.4    3.1e-17   60.0   0.6    2.2  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    7.6e-28   95.3   0.0    1.4e-14   51.6   0.0    2.2  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    4.6e-27   92.5   0.1    5.2e-19   66.0   0.0    3.1  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    9.4e-21   71.5   3.4    5.7e-12   42.5   0.1    2.9  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.9e-17   60.6   0.0    3.9e-13   46.3   0.0    2.2  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    1.4e-06   25.1   0.2      0.029   10.8   0.0    2.8  3  TIGR02316 propion_prpE: propionate--CoA ligase
     0.0004   15.7   0.1       0.13    7.3   0.0    2.2  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.0   0.0   3.1e-21   1.2e-18       1     189 [.     116     326 ..     116     385 .. 0.78
   2 !   95.8   0.0   1.3e-30     5e-28     236     408 ..     423     586 ..     402     587 .. 0.85

  Alignments for each domain:
  == domain 1    score: 65.0 bits;  conditional E-value: 3.1e-21
   TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeelaeelaeval........eailleeleekaaedasaeeaaeak.................skpddlayviyTSGStGkPKgVlvehrslvnllaslarryel......seedrvlqfsslaFDl.sveeiflallaGatl 189
                 tY e ++++n+  + Lk+  g+++++ +a++ +  +e  +   a+    a+ vp+  ++ ++ + +il+d++a+++++ ++   ++ +++         + ++l+    ++++          +                 ++p+dla +iyTSG+tGkPKgV+++h ++++ ++ ++r          +e dr l+f + a+    ++e++ ++ +Ga++
  MMETSP1061-20121228|7917_1 116 TYDEYNQKVNQCRSLLKD-LGIGEHSKIAIISNNRWEWATIAAATYSLNATLVPMYEAQLPSDWTYILNDSGAHAVFCATQEIFDKVQTEVlpstptvkSSLCLDAPLGEEHSF---------QtalssnridgeglliiePSPEDLAGLIYTSGTTGKPKGVELTHFNFTSNVKGATRSLVRdpkafiNECDRSLSFLPWAHSYgQTCELWSMMSSGASM 326
                 9****************8.56**********************************99988888*************99766443333332234444433222332222222222.........1234445577899*****99*******************************99998555546666777888888888888762456777777777665 PP

  == domain 2    score: 95.8 bits;  conditional E-value: 1.3e-30
   TIGR01733 236 slrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldealrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKi.rGfRielgEieaalaelpgveeav 408
                 +lr  + gG a++ae++  +  +++ + ++ +YG TEt+ ++t++  ++   +     ++Grp+ +v++++++e+++pvp+gv GE++ +G+ v++GY+n++e t e     p  ks   ++++TGD++++++dG +   GR+ +q K+ +G  + ++ ie+a++  + ++++v
  MMETSP1061-20121228|7917_1 423 NLRCGFSGGAACPAEVIGFMD-NVG-IPICEGYGLTETSPIITLNVPEN---RT--VGSVGRPVGGVSVFIVNENGNPVPPGVEGEICCTGPNVMKGYYNNQEATDEVISIAPDGKS---KMFHTGDMGKMDSDGWVRVTGRIKEQYKLeNGKYVVPTPIESAISMSRFISQVV 586
                 788889999999999888877.554.89************998664333...22..457*************************************************998887765...6***************************96699999999999999888887765 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   7.2e-22   2.7e-19      24     262 ..     113     354 ..      90     379 .. 0.80
   2 !   61.6   0.0   2.8e-20     1e-17     309     456 ..     453     594 ..     424     609 .. 0.88

  Alignments for each domain:
  == domain 1    score: 66.9 bits;  conditional E-value: 7.2e-22
   TIGR03098  24 rtltyaaLseevkalasglkalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvk.llvtskerldale.dalakchdlrtlilvdepekasekkagaevlsweklkaleeaaakvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLe......lredDrllavLPlsfDyGln.qlttaflvGatvvlldyllpkDvlkavekekitglaavPPlW 262
                 + +ty++ +++v+++ s+lk lg+ +  ++ai+ + r e  +   a+  + +  vp+      +  +yil+D+ ++ ++ +++e +d+++ ++l++ + +++ + +d+p  +  +++ +++ls +++   +e     + +++dla ++YtsG tG+Pkgv l+h n+    k  ++ L       ++e Dr l+ LP +  yG+   l + ++ Ga++ +   +    +l+ ++  k t l +vP l+
  MMETSP1061-20121228|7917_1 113 KYMTYDEYNQKVNQCRSLLKDLGIGEHSKIAIISNNRWEWATIAAATYSLNATLVPMYEAQLPSDWTYILNDSGAHaVFCATQEIFDKVQtEVLPSTPTVKSSLCLDAPLGE--EHSFQTALSSNRI--DGEGLLIIEPSPEDLAGLIYTSGTTGKPKGVELTHFNFTSNVKGATRSLVrdpkafINECDRSLSFLPWAHSYGQTcELWSMMSSGASMGICRGVP--VILEDLQLVKPTNLFSVPTLY 354
                 579*************************************99999999**********99999**********9863788899999987527899999*********99844..4443444454554..45555678889*************************997666655555541111226778**************9637899999999875554332..245555555555555555555 PP

  == domain 2    score: 61.6 bits;  conditional E-value: 2.8e-20
   TIGR03098 309 YGLteafRstyLdPeevdrrPdsiGkaipnaevlvlredGsecapeeeGelvhrGalvakGYWndpektaerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemikt.sGyRvsPteveevllatglvaeavvlgvpdpe 456
                 YGLte     +L+  e +r  +s+G+ +  + v++++e+G+ + p+ eGe+   G+ v kGY+n++e+t e+   +p        +    + GD++++D++G++ + gR  e  k   G  v Pt +e+++  +  ++++v  g + p+
  MMETSP1061-20121228|7917_1 453 YGLTETSPIITLNVPE-NRTVGSVGRPVGGVSVFIVNENGNPVPPGVEGEICCTGPNVMKGYYNNQEATDEVISIAPD------GKSKMFHTGDMGKMDSDGWVRVTGRIKEQYKLeNGKYVVPTPIESAISMSRFISQVVLCGANRPH 594
                 9999999888887544.6899***************************************************999888......44456789******************999996379*************************87765 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   8.6e-18   3.2e-15       1     220 [.     116     362 ..     116     376 .. 0.84
   2 !   73.4   0.0   9.4e-24   3.5e-21     224     382 ..     422     590 ..     404     594 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 8.6e-18
   TIGR01923   1 tfaeldkeaarlAkalkaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslle.ekedlqaisldeleaeae..............aeevs............lsasfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklg......ftesdnWLlsLPlyHvsGlsi.lfrallegatlkivdkfaaeqllesianekvthiSlVptqLkrlleess 220
                 t+ e +++++++   lk  ++ + + +a++++n+ e + +  a + l+++ +++ ++  + + t +l+++  + ++++++   +k  +q+  l+ + + +               +                l  + s +++a li+TSg+tGkpK+v  t+ n   +++g +++l       ++e d+ L+ LP  H  G++  l+ ++ +ga++ i        +le+++  k t +  Vpt+ k++ +  +
  MMETSP1061-20121228|7917_1 116 TYDEYNQKVNQCRSLLKDLGIGEHSKIAIISNNRWEWATIAAATYSLNATLVPMYEAQLPSDWTYILNDSGAHAVFCATQEIfDK--VQTEVLPSTPTVKSslcldaplgeehsfQ---TalssnridgeglLIIEPSPEDLAGLIYTSGTTGKPKGVELTHFNFTSNVKGATRSLVrdpkafINECDRSLSFLPWAHSYGQTCeLWSMMSSGASMGICRGVP--VILEDLQLVKPTNLFSVPTLYKKVFDGVH 362
                 789999**********************************************9999999999*************9976544233..56666665555554457777776666553...04557788888987788899***********************************9963333336788**************986599************9955..9*******99999999***9999887665 PP

  == domain 2    score: 73.4 bits;  conditional E-value: 9.4e-24
   TIGR01923 224 eslrkiLLGGsaipaplieeaqekglpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd.....keghgeilvkganlmkgYlekgelteav......eeqGwlktgDlgeldgegfllvldRrddli.ISGGENiypeeiEkvlkslpevqeavvvpk 382
                  +lr+   GG+a pa++i    + g+pi ++yG TEt s ++tl+v+  +   +svG+p+ +v++ i +++     +   gei   g+n+mkgY++++e+t+ v       +   ++tgD+g++d +g + v++R ++ + +  G  + p  iE+++  +  ++++v+ ++
  MMETSP1061-20121228|7917_1 422 GNLRCGFSGGAACPAEVIGFMDNVGIPICEGYGLTET-SPIITLNVPENRT-VGSVGRPVGGVSVFIVNENgnpvpPGVEGEICCTGPNVMKGYYNNQEATDEVisiapdGKSKMFHTGDMGKMDSDGWVRVTGRIKEQYkLENGKYVVPTPIESAISMSRFISQVVLCGA 590
                 58999999****************************8.6688888887774.899************9998888866678*****************888765422222224459********************87654399***********************99886 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   0.0   1.3e-22   4.8e-20      25     311 ..     109     404 ..      94     421 .. 0.78
   2 !   57.9   0.0   4.4e-19   1.6e-16     274     430 ..     418     580 ..     405     602 .. 0.87

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 1.3e-22
   TIGR02262  25 iddvsslsygeleaevrrvaaalrrlGvkreervllvlldtvdfpivflG..airaGivpvalntlltaddyaylledsrarvvlvs.eell.pvlkevlaklpdleklvvvgakpagekqlaellates...eqekaaatkaddpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlg.....lreddvvfsaaklffayGlGnalifplsvGatavlmaerptpdavfdrlrrvkptifygvptlyaamladpelkaed..ekrlrlctsaGealpeevGkrwkarfGvdildGvG 311
                  d+ + ++y+e +++v+++ ++l+ lG+ ++ +++++  +  ++ ++     +++a +vp+   ++l  +d++y+l+ds a++v+ + +e++  v  evl  +p+++  +   a+   e+++   l+++    e        ++d a  +y+sG+tG+pkGv  +h n +   +  +r+ +      + e d  +s      +yG    l   +s Ga+  +    p    +++ l+ vkpt +++vptly  ++   +   e+  + r +l   a e   ++v      r  +d  d v 
  MMETSP1061-20121228|7917_1 109 SDTFKYMTYDEYNQKVNQCRSLLKDLGIGEHSKIAIISNNRWEWATIAAAtySLNATLVPMYE-AQL-PSDWTYILNDSGAHAVFCAtQEIFdKVQTEVLPSTPTVKSSLCLDAPLGEEHSFQTALSSNRidgEGLLIIEPSPEDLAGLIYTSGTTGKPKGVELTHFNFTSNVKGATRSLVRdpkafINECDRSLSFLPWAHSYGQTCELWSMMSSGASMGICRGVP---VILEDLQLVKPTNLFSVPTLYKKVFDGVHNLMESapPLRKKLMKNALEMGEAKVAADKGMRKELDAFDRVK 404
                 5888999*************************************9987651257788888754.344.689***********999652565516788999*********9999988889999999988762113344567789*********************9988776655544444322222299**********9******************988876666...5899*****************99987655444442356666677776666666666666666666666555 PP

  == domain 2    score: 57.9 bits;  conditional E-value: 4.4e-19
   TIGR02262 274 aedekrlrlctsaGealpeevGkrwkarfGvdildGvGstellhiflsnlpddvkyGtsGkpvpGyrlrlvddggedvadgevGellvsgpssaagywnnreksratf......eGewtrsGdkyvrnddGsytyaGrtddllkv.sGiyvspfevesaliahe 430
                  +   +lr   s G a p+ev   +  + G+ i +G G te   i   n+p++   G+ G+pv G  + +v+++g++v  g+ Ge+   gp   +gy+nn+e + +        + +  ++Gd    ++dG    +Gr  + +k+  G yv p  +esa+    
  MMETSP1061-20121228|7917_1 418 GRFGGNLRCGFSGGAACPAEVI-GFMDNVGIPICEGYGLTETSPIITLNVPENRTVGSVGRPVGGVSVFIVNENGNPVPPGVEGEICCTGPNVMKGYYNNQEATDEVIsiapdgKSKMFHTGDMGKMDSDGWVRVTGRIKEQYKLeNGKYVVPTPIESAISMSR 580
                 5556789*************95.69999***************************************************************************99877333322346779************************8569**********975544 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   9.5e-12   3.6e-09     191     298 ..     249     355 ..     242     364 .. 0.89
   2 !   60.0   0.6   8.4e-20   3.1e-17     318     476 ..     428     589 ..     414     595 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 9.5e-12
   TIGR03205 191 addvallqytggttglpkgamlthgnltsavsiyd.vwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfdvaavlrdieekratvfpgvptmwi 298
                 ++d+a l yt gttg pkg  lth n+ts v        +  +a  ++ +r +  lp  h y  t  l + +  g  + + +   v  +l d++  + t +  vpt++ 
  MMETSP1061-20121228|7917_1 249 PEDLAGLIYTSGTTGKPKGVELTHFNFTSNVKGATrSLVRDPKAFINECDRSLSFLPWAHSYGQTCELWSMMSSGASMGICR--GVPVILEDLQLVKPTNLFSVPTLYK 355
                 89****************************9755414445579999*****************************9888876..57889**********999****985 PP

  == domain 2    score: 60.0 bits;  conditional E-value: 8.4e-20
   TIGR03205 318 gsggaplpvevaklferkvglklksgwgmtetcspgtghplegpdkpgsiglmlpgieldvvslddpkkvlppgevgelrirgpnvtrgywnraeesaeafv......gdrfltgdigyvdrdgyfflvdrkkd.miisggfnvypqmieqaiyelpavqevivig 476
                  sgga  p ev  +++ +vg  +  g+g+tet    t   +e     gs+g  + g+ + +v  +++ +++ppg  ge+   gpnv +gy+n+ e + e +       ++ f tgd+g +d dg+  +  r k+   +  g  v p  ie ai     + +v++ g
  MMETSP1061-20121228|7917_1 428 FSGGAACPAEVIGFMD-NVGIPICEGYGLTETSPIITLNVPE-NRTVGSVGRPVGGVSVFIV--NENGNPVPPGVEGEICCTGPNVMKGYYNNQEATDEVISiapdgkSKMFHTGDMGKMDSDGWVRVTGRIKEqYKLENGKYVVPTPIESAISMSRFISQVVLCG 589
                 49*********99776.79************96666655555.5679*****9999976665..68899************************9998876532332224579******************977615689999***********9999999998877 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   3.6e-17   1.4e-14      44     230 ..     105     285 ..      83     323 .. 0.82
   2 !   41.4   0.1   4.4e-14   1.6e-11     317     441 ..     429     557 ..     400     591 .. 0.80

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 3.6e-17
   TIGR03208  44 lrvesgavrrlsyreldalvdriavglarlgvgrgdvvslqlpnrwefvalylacarigavlnplmpifrerelsfmlkfadskvlvvpksfrgfdhaamarelqsklpalrqvvvvdg..dgdddfdallvtaerdddpdaaailrgdrlspddvtqliytsgttgepkgvmhtantllsnilayaer 230
                 +  +s   + ++y e + +v++    l+ lg+g    +++   nrwe ++++ a   + a+l p+       + +++l+ + ++ +    +   fd+  +  e+ ++ p+++  + +d+  + + +f++ l ++  d +      l    +sp+d++ liytsgttg+pkgv  t   + sn++   + 
  MMETSP1061-20121228|7917_1 105 YDEQSDTFKYMTYDEYNQKVNQCRSLLKDLGIGEHSKIAIISNNRWEWATIAAATYSLNATLVPMYEAQLPSDWTYILNDSGAHAVFCA-TQEIFDK--VQTEVLPSTPTVKSSLCLDAplGEEHSFQTALSSNRIDGEG-----LLIIEPSPEDLAGLIYTSGTTGKPKGVELTHFNFTSNVKGATRS 285
                 55566777889********************************************************************9988865544.4466886..568999***********998434567999999955444433.....344579**********************9999999999865554 PP

  == domain 2    score: 41.4 bits;  conditional E-value: 4.4e-14
   TIGR03208 317 cagapipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevkvidadgaklsagevgrllvraasnfggylkrph....lnavdaeg...wfdtgdlafldaegyiriagrskd 441
                   ga  p+ ++    + +g+ i+  +g+te+  + +++    e+++  + g+p+ gv v +++ +g+ +++g  g++   +   + gy    +    + ++  +g    f tgd+ ++d++g++r++gr k+
  MMETSP1061-20121228|7917_1 429 SGGAACPAEVIGF-MDNVGIPICEGYGLTETSPIITLN--VPENRTVGSVGRPVGGVSVFIVNENGNPVPPGVEGEICCTGPNVMKGYYNNQEatdeVISIAPDGkskMFHTGDMGKMDSDGWVRVTGRIKE 557
                 5688889888865.6789************99876554..5566777788**************************************987641111445666664447********************997 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.9e-08   1.1e-05      25     169 ..     114     277 ..      94     286 .. 0.62
   2 !   66.0   0.0   1.4e-21   5.2e-19     318     442 ..     474     600 ..     448     662 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.9e-08
   TIGR01734  25 eltykeLkeesdklaaalqerlleekePiivfGkqefemlvaflgsiksGhayiPv.Dtsipleriekikeaaepelvievaelsielvetevitl.ealee...ieeekaeaveleka.....vke..........ddnyyiiytsGstGkPkGvqishdnLvs 169
                  +ty e  +++++  + l++  + e++ i +  ++ +e  +   ++     + +P+ +++ p++  + i + + +++v++++++ ++ v+tev+    ++++   + +   e +++++a     +++          +d   +iytsG+tGkPkGv++ h n+ s
  MMETSP1061-20121228|7917_1 114 YMTYDEYNQKVNQCRSLLKDLGIGEHSKIAIISNNRWEWATIAAATYSLNATLVPMyEAQLPSD-WTYILNDSGAHAVFCATQEIFDKVQTEVLPStPTVKSslcLDAPLGEEHSFQTAlssnrIDGeglliiepspEDLAGLIYTSGTTGKPKGVELTHFNFTS 277
                 3578888888888888888888888888888887777766666666666777888734455555.467788888888888888888888888543202222211011111133333333000003321111111222466778*****************99876 PP

  == domain 2    score: 66.0 bits;  conditional E-value: 1.4e-21
   TIGR01734 318 PiGfakpdvnlfivdeeGeklsegekGeivivGdsvskGylnnpekteeaffea..egkrayrtGDagtieddgllfyqGrlDfqikl.nGyrieLedieanlkkskyikeavvvPkynkdekveaLi 442
                  +G    +v++fiv+e+G+ ++ g +Gei  +G+ v kGy nn+e t+e+   a   + + ++tGD+g+++ dg +++ Gr+  q kl nG  +    ie+ +  s++i + v     n+ ++++ ++
  MMETSP1061-20121228|7917_1 474 SVGRPVGGVSVFIVNENGNPVPPGVEGEICCTGPNVMKGYYNNQEATDEVISIApdGKSKMFHTGDMGKMDSDGWVRVTGRIKEQYKLeNGKYVVPTPIESAISMSRFISQVVLCGA-NRPHNIALIV 600
                 4555566899***************************************987652145678***************************6688888899***********99766554.4667665554 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.5     1e-09   3.9e-07      36     268 ..      59     279 ..      26     356 .. 0.73
   2 !   42.5   0.1   1.5e-14   5.7e-12     390     533 ..     447     588 ..     436     600 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1e-09
   TIGR02188  36 fekvldeslepkvkWfedgelnvsyncvdrhvek...rkdkvaiiwegdeegedsrkltYaellrevcrlanvlkelGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaeesvekvlvvkrtgeevaewkegrDvwweelvekeasaecepekldsedplfiLYtsGstGkPkGvlhttgGyllla 268
                 f ++  ++++ k + f d+e   ++n++    ++      k  +    de+++  + +tY e  ++v+++  +lk+lG+ +  ++ai     +e + +  a   + a+   ++    ++  +  ++d+ a+ v +a +++         k+  e l +++ +v++ l +     e ++++       ++ ++    + +   + + ed+  ++YtsG+tGkPkGv  t   +   +
  MMETSP1061-20121228|7917_1  59 FMTTD-QEEQFKERGFLDAEGMTAFNTLHELQAHssiVFAKNELFGTYDEQSDTFKYMTYDEYNQKVNQCRSLLKDLGIGEHSKIAIISNNRWEWATIAAATYSLNATLVPMYEAQLPSDWTYILNDSGAHAVFCATQEIFD-------KVQTEVLPSTP-TVKSSLCLDAPLGEEHSFQT---ALSSNRIDG---EGLLIIEPSPEDLAGLIYTSGTTGKPKGVELTHFNFTSNV 279
                 44433.3334566677777777777776543222111333444444556777789*********************************************************************************987644.......33345677777.7**99999876555343442...233333332...3334444468*******************88776666555 PP

  == domain 2    score: 42.5 bits;  conditional E-value: 1.5e-14
   TIGR02188 390 cpivdtwWqtetGgilitplpgvatelkpgsatlPlfGieaevvdeegkeveeeeeggvLvikkpwPsmlrtiygdeerfvetYfkklkg....lyftGDgarrdkdGyiwilGRvDdvinv.sGhrlgtaeiesalvsheavaeaavv 533
                 +pi++ +  tet  i+  ++p    +   gs  +P+ G+++ +v+e+g++v ++ e g ++ +   P ++++ y+++e   e+  + +++    +++tGD+ ++d+dG + ++GR+ +  ++  G  +  + iesa+     ++     
  MMETSP1061-20121228|7917_1 447 IPICEGYGLTETSPIITLNVPE---NRTVGSVGRPVGGVSVFIVNENGNPVPPGVE-GEICCT--GPNVMKGYYNNQEATDEVI-SIAPDgkskMFHTGDMGKMDSDGWVRVTGRIKEQYKLeNGKYVVPTPIESAISMSRFISQVVLC 588
                 6899*****************9...5889************************999.677776..589*******999665554.434333566************************999845899999999*999888777766555 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.5e-05    0.0092      48     237 ..     114     311 ..      62     350 .. 0.80
   2 !   46.3   0.0     1e-15   3.9e-13     341     447 ..     463     574 ..     428     589 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.5e-05
   TIGR02275  48 kfsyrelderadnlaasltklGikkgdtavvqlpniaefyivffallklGvaPvlalfshrkselkayaeqieaalliidrahslfdedalarelkaklstlkvvivagk..eveeelksaleslaee...vkleetkadevaffqlsGGstGtpkliPrthddyaysvrrsvei......celtqqtrylcalPaahnyp 237
                  ++y e ++++++  + l+ lGi++  ++ +   n  e+  +  a   l ++ v    +   s+ ++  + + a+++   + ++ fd  ++  e+  +++t+k  +  ++    e++ ++al s   +   + + e +++++a +  + G+tG pk +  th +++  v+ +           +++  r l+ lP ah y 
  MMETSP1061-20121228|7917_1 114 YMTYDEYNQKVNQCRSLLKDLGIGEHSKIAIISNNRWEWATIAAATYSLNATLVPMYEAQLPSDWTYILNDSGAHAVFCAT-QEIFD--KVQTEVLPSTPTVKSSLCLDAplGEEHSFQTALSSNRIDgegLLIIEPSPEDLAGLIYTSGTTGKPKGVELTHFNFTSNVKGATRSlvrdpkAFINECDRSLSFLPWAHSYG 311
                 56899***********************99999999999999999988888888888899999999999999998877665.56776..46789999999999887777534677788888887765543566779999***************************99986654311111133556678899999999985 PP

  == domain 2    score: 46.3 bits;  conditional E-value: 1e-15
   TIGR02275 341 rlddsdeiivttqGkPispddevrvvdeegepvaeGeaGrlltrGPytirGyykaeehnakafd.....aeGfyitGdlvkltkeGyivveGrakdqin.rGGekiaaeeien 447
                  l+ ++++ v + G+P+ +   v +v+e+g+pv++G +G +   GP  ++Gyy ++e   ++       +  ++ tGd+ k++++G+++v+Gr k+q     G+ +    ie+
  MMETSP1061-20121228|7917_1 463 TLNVPENRTVGSVGRPVGGV-SVFIVNENGNPVPPGVEGEICCTGPNVMKGYYNNQEATDEVISiapdgKSKMFHTGDMGKMDSDGWVRVTGRIKEQYKlENGKYVVPTPIES 574
                 488899999999****9876.799********************************999988753222245589***********************8623455555555555 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.22        81      80     114 ..     111     145 ..      71     162 .. 0.83
   2 !   10.5   0.0   9.6e-05     0.036     235     251 ..     253     269 ..     236     294 .. 0.88
   3 !   10.8   0.0   7.7e-05     0.029     375     530 ..     442     592 ..     432     641 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.22
   TIGR02316  80 eertltyrqlhrevnalasalralgvrrgdrvliy 114
                 + + +ty +  ++vn+  s+l+ lg++   ++ i 
  MMETSP1061-20121228|7917_1 111 TFKYMTYDEYNQKVNQCRSLLKDLGIGEHSKIAII 145
                 34567999999***************998887765 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 9.6e-05
   TIGR02316 235 syilytsgttgkpkgvq 251
                 + ++ytsgttgkpkgv+
  MMETSP1061-20121228|7917_1 253 AGLIYTSGTTGKPKGVE 269
                 5689***********97 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 7.7e-05
   TIGR02316 375 sdalgkpvidnywqtetgwpvlaiarglddkpvklgspglpvygyrldvldeatgedvgpnekgllvvaaplppgclstvwgdd..arflktyfsafkrllyssldwgirdedgytfilgrtddvinv.aghrlgtreieesvsshaavaevavvgvkd 530
                  d +g p+ + y  tet  p++++     +++  +gs g pv g  + +++e  g++v p+  g ++ ++p     ++  ++++  +  + +     k  ++ + d g  d dg++ + gr  +  ++  g+ +    ie ++s    +++v + g + 
  MMETSP1061-20121228|7917_1 442 MDNVGIPICEGYGLTETS-PIITLNV---PENRTVGSVGRPVGGVSVFIVNE-NGNPVPPGVEGEICCTGP---NVMKGYYNNQeaTDEVISIAPDGKSKMFHTGDMGKMDSDGWVRVTGRIKEQYKLeNGKYVVPTPIESAISMSRFISQVVLCGANR 592
                 488999**********96.9988864...456679****************9.59*********9998876...56777766541134566777788899*********************99988773577778888999999988888888888764 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0   0.00035      0.13     414     441 ..     249     276 ..     233     283 .. 0.89
   2 !    6.1   0.0   0.00082      0.31     676     707 ..     531     562 ..     511     644 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00035
   TIGR03443 414 PdsnptlsftsGseGiPkGvkGrhfsla 441
                 P+  + l +tsG++G PkGv   hf ++
  MMETSP1061-20121228|7917_1 249 PEDLAGLIYTSGTTGKPKGVELTHFNFT 276
                 6778899******************876 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.00082
   TIGR03443 676 rdrlyrtGdlGrylPdGnvecsGraddqvkir 707
                 + ++++tGd+G+   dG v  +Gr  +q k+ 
  MMETSP1061-20121228|7917_1 531 KSKMFHTGDMGKMDSDGWVRVTGRIKEQYKLE 562
                 679*************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.55u 0.14s 00:00:00.69 Elapsed: 00:00:00.63
# Mc/sec: 1477.02
//
Query:       MMETSP1061-20121228|7930_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.44
# Mc/sec: 1886.84
//
Query:       MMETSP1061-20121228|7935_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   19.4   3.6    0.00012   19.4   2.5    3.7  4  TIGR00950 2A78: carboxylate/amino acid/amine transporter
  ------ inclusion threshold ------
       0.03   12.1   0.1      0.058   11.1   0.0    1.4  1  TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2     0.068   1.4e+02      57      88 ..      87     122 ..      41     134 .. 0.59
   2 !    3.7   0.0    0.0037       7.6      97     123 ..     145     171 ..     141     176 .. 0.87
   3 ?   -0.7   0.1     0.083   1.7e+02     128     155 ..     203     230 ..     194     267 .. 0.62
   4 !   19.4   2.5     6e-08   0.00012     198     264 .]     311     378 ..     302     378 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.068
   TIGR00950  57 lgvfyvll....flavkkltvaiaalllvlaPlyvt 88 
                  g+ y+++     +a  k++   a +l   aPl+++
  MMETSP1061-20121228|7935_1  87 SGCGYAMYnvglCIALAKTSLLRASILSQCAPLFIV 122
                 223332221111334444444444444455555444 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0037
   TIGR00950  97 ervrkkkllAavlalaGivlllsdgnl 123
                 e v +k +l++vl l+G+ +++s++ +
  MMETSP1061-20121228|7935_1 145 EGVHWKHVLGVVLTLVGTGIYISSTTT 171
                 568899****************99866 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.083
   TIGR00950 128 aGlllgllsgisfAlgtvlakrlvkkeg 155
                  G ++++++++ +A +    +++++  +
  MMETSP1061-20121228|7935_1 203 LGDFAAAAASAGYATYISCGRQARRIVP 230
                 5667788888888888888777776555 PP

  == domain 4    score: 19.4 bits;  conditional E-value: 6e-08
   TIGR00950 198 llyLgligtllayflynkglkevdasaasilalleplvallLgllilgetl.slvqliggalilaavl 264
                 +l+Lg++  ++a  + n  l  v+a +a++ + +ep++a+++g++++ e + +l+  +++++i++a+l
  MMETSP1061-20121228|7935_1 311 SLFLGVVCGAIAVGMINWSLNHVSALQAAAANSAEPIAASIIGVVFFSEPVpNLTAVLAAGIIVFAML 378
                 689********************************************997626777788888888765 PP

>> TIGR01957  nuoB_fam: NADH-quinone oxidoreductase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   2.8e-05     0.058      94     128 ..     209     242 ..     202     257 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.8e-05
   TIGR01957  94 cansGGlfkesysvvkgvdrivPvdvyiPGcpPrp 128
                  a+s G + +  s  + + rivPv v++PGc   +
  MMETSP1061-20121228|7935_1 209 AAASAG-YATYISCGRQARRIVPVYVHLPGCVLVA 242
                 455666.5555888999**************7655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.40
# Mc/sec: 1359.49
//
Query:       MMETSP1061-20121228|7933_1  [L=669]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (669 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.41
# Mc/sec: 2153.68
//
Query:       MMETSP1061-20121228|7936_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.18s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 491.96
//
Query:       MMETSP1061-20121228|7937_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-18   63.2   0.2    3.3e-18   63.1   0.1    1.0  1  TIGR00327 secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic


Domain annotation for each model (and alignments):
>> TIGR00327  secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.1   8.1e-22   3.3e-18       3      61 .]      12      70 ..      10      70 .. 0.97

  Alignments for each domain:
  == domain 1    score: 63.1 bits;  conditional E-value: 8.1e-22
   TIGR00327  3 ieevkefikeskrvlkvakKPdkeEYlkvaKvtgigiiivGiiGyiIkiiaellkgvlk 61
                ie +++f k+s  + k++ KPd++E++ +a +t++g+ i+G+iG+ +k+++++++ +l+
  MMETSP1061-20121228|7937_1 12 IEPLQQFAKDSVHLVKKCTKPDRKEFTRIAQATLVGFAIMGFIGFFVKLVHIPINNILV 70
                899****************************************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.06u 0.17s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 431.96
//
Query:       MMETSP1061-20121228|7938_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-19   67.0   0.0    4.6e-19   66.3   0.0    1.2  1  TIGR03689 pup_AAA: proteasome ATPase
    1.5e-15   55.0   0.0    2.3e-15   54.4   0.0    1.2  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    3.7e-14   49.8   0.0    4.9e-14   49.4   0.0    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    5.6e-12   43.0   0.1    2.3e-11   41.0   0.1    1.8  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    0.00015   18.3   0.0    0.00021   17.8   0.0    1.1  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00033   18.4   0.0    0.00078   17.2   0.0    1.6  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
     0.0069   12.7   0.0      0.014   11.7   0.0    1.6  1  TIGR00763 lon: ATP-dependent protease La
  ------ inclusion threshold ------
      0.022   10.7   0.0      0.033   10.2   0.0    1.2  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
      0.024   11.9   0.0      0.036   11.3   0.0    1.3  1  TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase
      0.044   10.5   0.0       0.32    7.6   0.0    2.0  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein


Domain annotation for each model (and alignments):
>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   1.1e-21   4.6e-19     213     391 ..     206     389 ..     195     404 .. 0.86

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 1.1e-21
   TIGR03689 213 lkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaeg..rPvvvffdemdslfrtr...GsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPl....eedlaea 391
                 ++  + +ll+G PG+Gkt + +a+a  la ++++    ++ +l+i    l++k+   + + + ++f+  r+  +++  + v v +de++sl   r   GsG  sd     v  ll+ ld + s  nv+v+  +n    id a l   r+d+k++ie P  +a  +il + l+e + +    ee+la++
  MMETSP1061-20121228|7938_1 206 VHWNRILLLHGLPGTGKTSLCRALAHKLAIRMSD-RFPRATLLEIHSHSLFSKWFSTSGKLVSALFSMVRDMVEDDpySLVCVVIDEVESLASSRsnaGSGDPSDAMR-AVNSLLTSLDRLRSFPNVLVLTTTNITGQIDDAFL--DRVDLKLHIELPILRARYEILRTCLEELMRVgivgEEELADF 389
                 5556779************************977.678999*******************************99984346999********99985557777777654.5899*******************************..5*********************99998765432445566655 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   5.6e-18   2.3e-15     158     309 ..     211     375 ..     200     399 .. 0.84

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 5.6e-18
   TIGR01242 158 GvllyGppGtGktllakavaeet.........natfirvvgselvkkyiGeGarlvrevfklak...ekap...siifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkm 309
                  +ll+G pGtGkt l +a+a++          +at++ + +  l  k+     +lv  +f + +   e  p     + ide++++a+ r ++ ++   +  r++  ll+ ld + +  nv v+++tn    +d a l   r d  + + lp l+ r eil+    ++
  MMETSP1061-20121228|7938_1 211 ILLLHGLPGTGKTSLCRALAHKLairmsdrfpRATLLEIHSHSLFSKWFSTSGKLVSALFSMVRdmvEDDPyslVCVVIDEVESLASSRSNAGSGDPSDAMRAVNSLLTSLDRLRSFPNVLVLTTTNITGQIDDAFLD--RVDLKLHIELPILRARYEILRTCLEEL 375
                 579*****************98534444444479***************************99833334453224578**************999999**************************************95..899999999999********9766554 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0   1.2e-16   4.9e-14     484     650 ..     206     387 ..     173     399 .. 0.81

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 1.2e-16
   TIGR01243 484 irppkgvllfgppgtgktllakavate.....s....ganfiavrgpeilskwvgesekaireifrkarqaa...p...aiifldeidaiapargadlseavtd..rivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleela 650
                 ++  + +ll+g pgtgkt l +a+a +     s     a ++ ++   ++skw   s k +  +f   r+     p   + + +de++++a +r +  s   +d  r vn llt ld l+   +v+v+++tn    +d a+l   r+d  + +  p  +ar+ei++    +l     v  eela
  MMETSP1061-20121228|7938_1 206 VHWNRILLLHGLPGTGKTSLCRALAHKlairmSdrfpRATLLEIHSHSLFSKWFSTSGKLVSALFSMVRDMVeddPyslVCVVIDEVESLASSRSNAGSGDPSDamRAVNSLLTSLDRLRSFPNVLVLTTTNITGQIDDAFLD--RVDLKLHIELPILRARYEILRTCLEELMRVGIVGEEELA 387
                 55667889**************999763333322222588999**********************9999864222333356889**********99877765553389*********************************95..999999999999*******99877666655555555555 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.1   5.5e-14   2.3e-11      92     240 ..     212     373 ..     200     391 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 5.5e-14
   TIGR01241  92 vllvGpPGtGktLlakavaGeagv.........pffsi.sGsdfvemfvGvGa......srvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhak 240
                 +ll G PGtGkt l +a+a    +          +++i s s f + f   G       s vrD+ e+   +  c++ iDe++++ ++r+++ +g  ++  +++n lL+ +D + +  +v+vl +tn +  +D+a+l   r D ++ +++P l+ r eil+  ++
  MMETSP1061-20121228|7938_1 212 LLLHGLPGTGKTSLCRALAHKLAIrmsdrfpraTLLEIhSHSLFSKWFSTSGKlvsalfSMVRDMVEDDPYSLVCVV-IDEVESLASSRSNAGSGDPSDAMRAVNSLLTSLDRLRSFPNVLVLTTTNITGQIDDAFL--DRVDLKLHIELPILRARYEILRTCLE 373
                 799***************9886541222111113445447889999987655322224489*****99998888865.9************9889899999***********************************9..5********************97665 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     5e-07   0.00021     313     414 ..     210     325 ..     189     349 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 5e-07
   TIGR03922 313 kHlllaGPPGtGkttiArvvakiyaG.lg.vlrkpevrEvsRadligeyigeseaktnelidkaLggv.........lFlDEayaLvek..rdgakddf.GleaidtLLarlEndR 414
                 + lll G PGtGkt++ r++a+ +a  ++    + ++ E++   l +++ + s++  ++l     + v         + +DE+ +L +   + g++d+   + a++ LL  l+  R
  MMETSP1061-20121228|7938_1 210 RILLLHGLPGTGKTSLCRALAHKLAIrMSdRFPRATLLEIHSHSLFSKWFSTSGKLVSALFSMVRDMVeddpyslvcVVIDEVESLASSrsNAGSGDPSdAMRAVNSLLTSLDRLR 325
                 558999***************999851332466889******************99988765554443333333334789***999988445677887635789999999998766 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.9e-06   0.00078      19      65 ..     206     252 ..     190     260 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.9e-06
   TIGR00150  19 ldlatvvlLkGdlGaGKttlvkgllkglGiqgevkSPtftlveeYne 65 
                 +  + ++lL+G  G+GKt+l ++l+++l i ++ + P  tl+e  ++
  MMETSP1061-20121228|7938_1 206 VHWNRILLLHGLPGTGKTSLCRALAHKLAIRMSDRFPRATLLEIHSH 252
                 45578*************************99988888888876655 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   3.4e-05     0.014     353     378 ..     209     234 ..     180     359 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.4e-05
   TIGR00763 353 gkilclvGPPGVGKtSlaksiAkaln 378
                  +il l+G PG GKtSl +++A+ l 
  MMETSP1061-20121228|7938_1 209 NRILLLHGLPGTGKTSLCRALAHKLA 234
                 479*******************8775 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0     8e-05     0.033     490     559 ..     212     284 ..     207     301 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 8e-05
   TIGR02639 490 flfvGptGvGktelakqLaeelgvell.rfDmseymekhtvsrl..iGsPpGyvGfeeGGlLteavrknPyav 559
                 +l  G  G Gkt l+++La++l++++  rf  +   e h+ s +    s +G +      ++ + v+ +Py++
  MMETSP1061-20121228|7938_1 212 LLLHGLPGTGKTSLCRALAHKLAIRMSdRFPRATLLEIHSHSLFskWFSTSGKLVSALFSMVRDMVEDDPYSL 284
                 5788999******************955998888888877554311235555555555566666666666655 PP

>> TIGR03574  selen_PSTK: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   8.8e-05     0.036       1      27 [.     211     237 ..     211     301 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 8.8e-05
   TIGR03574   1 liiltGlPgvGkstfskelakklsekn 27 
                 +++l GlPg+Gk++++++la+kl+ + 
  MMETSP1061-20121228|7938_1 211 ILLLHGLPGTGKTSLCRALAHKLAIRM 237
                 6899*****************997654 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0   0.00078      0.32      44      84 ..     213     253 ..     208     330 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00078
   TIGR02928  44 liyGktGtGKtavtkkvlkeleeaaeekdvrvstvyvnCqe 84 
                 l+ G +GtGKt+  +++ ++l+  ++++  r ++ ++  + 
  MMETSP1061-20121228|7938_1 213 LLHGLPGTGKTSLCRALAHKLAIRMSDRFPRATLLEIHSHS 253
                 7899*************999998888876665555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        55  (0.0134081); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.36u 0.24s 00:00:00.60 Elapsed: 00:00:00.39
# Mc/sec: 1705.71
//
Query:       MMETSP1061-20121228|7942_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 607.15
//
Query:       MMETSP1061-20121228|7946_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 509.96
//
Query:       MMETSP1061-20121228|7945_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   11.7   2.4      0.025   10.9   1.7    1.2  1  TIGR00595 priA: primosomal protein N'
        9.3    2.2  11.8         14    1.7   8.1    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   1.7   1.2e-05     0.025     367     451 ..     326     413 ..     321     439 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.2e-05
   TIGR00595 367 RagRaekpgevliqtvnPehpa.ieaalkedyeaFleqelaerkalayPPftrlillvvkgkneekakkvaqklaellk..elldekl 451
                 R gR ++ g + + t +P++++ + +   + y+++ eq+++ r +++yPP+         +++ ++ +++a + ++l +  e+ +++l
  MMETSP1061-20121228|7945_1 326 RHGRGSQYGGLKMDTSQPSRSDpMMYRGIQGYHTYGEQAADMRMQQQYPPHAAYAHHSHTHTQPQRHQDAASAQFALHQqyEMQQRQL 413
                 8899999***********98754889999**********************9999999999988888877766655555112333344 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   8.1    0.0066        14     284     438 ..     262     427 ..     195     452 .. 0.61

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.0066
   TIGR00934 284 nslaaesdees........sesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdle..eldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldseenayptyndeee....d 438
                  ++a+++ ++s         e+r  +++      tss + +++++ t+ +++ s +++++   e+ +  + ++   l+  +++ ++  + m+++ +++ ++  ++  +  ++++   ++ ya++s+ +++ ++ +  as ++  +++ + ++++ +  y+ +++    +
  MMETSP1061-20121228|7945_1 262 SATATTTASSSgrqtkksdPETRTSRSSSSP--KTSSSSSKQRKSGTKHHQQTSRKGNRSSLSEQRRHGRGSQYGGLKmdTSQPSR-SDPMMYRGIQGYHTYGEQAADMRMQQQYPPHAAYAHHSHTHTQPQRHQDAASAQFALHQQYEMQQRQLHHLYSRDQNrqvgQ 427
                 2222221111111111111222222222222..22222223356667777777777766555555555555554433300333333.5699999999999999999999999999999999999999999999888888888888888888888888887776643331 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.20s 00:00:00.48 Elapsed: 00:00:00.25
# Mc/sec: 3437.00
//
Query:       MMETSP1061-20121228|7932_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.3   0.0      0.098    9.5   0.0    1.9  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0     0.071   2.9e+02      64     180 ..      95     128 ..      77     143 .. 0.39
   2 ?    9.5   0.0   2.4e-05     0.098      18      83 ..     224     286 ..     207     322 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.071
   TIGR03866  64 avqvldaeteevlkelps.GedPelfvlepdgkllyianeddalvtvvdiekrkvlaeidvGvePeGlavsPdgklvvntsettnmahfidtetlkivdnvlvdarPraaeftadgke 180
                 ++++ d +t + ++++    +d                                                                                       + f+ad+++
  MMETSP1061-20121228|7932_1  95 ELRLWDIATGKTTRRFVGhEKDVLS------------------------------------------------------------------------------------VAFSADNRQ 128
                 3344444443333332210122222....................................................................................223333332 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 2.4e-05
   TIGR03866  18 ekdntisvidletlevvktlkvGerPrGitlskdgkllyvcasdsdavqvldaeteevlkelpsGe 83 
                  kd t  + ++++ +    l++G+   G+++s++    ++ca+ ++a+++ d+e++ v+++l   e
  MMETSP1061-20121228|7932_1 224 GKDGTAMLWEVNEGKRLYSLDAGSIINGLVFSPNR--YWLCAATDEAIKIWDLESKMVVSTLAP-E 286
                 56777777788888889999999999******976..578*******************99953.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1787.35
//
Query:       MMETSP1061-20121228|7950_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       331  (0.0806923); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.21s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|7951_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 550.91
//
Query:       MMETSP1061-20121228|7952_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00042   17.2   0.0    0.00046   17.0   0.0    1.1  1  TIGR00887 2A0109: phosphate:H+ symporter


Domain annotation for each model (and alignments):
>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.1e-07   0.00046     148     189 ..       4      45 ..       2      80 .. 0.85

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.1e-07
   TIGR00887 148 rRGaliaavFamqgfGilagaivalivlaafkkeleaaasea 189
                 +RG  + +vFamqg+Gi   ++v+l++  + + + + +++++
  MMETSP1061-20121228|7952_1   4 HRGRRVQLVFAMQGLGIWFNSLVMLVLFWILQGRADDNTNNN 45 
                 69999**********************998887766555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 647.95
//
Query:       MMETSP1061-20121228|7948_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 766.55
//
Query:       MMETSP1061-20121228|7941_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 781.78
//
Query:       MMETSP1061-20121228|7953_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-19   67.0  30.6    6.3e-11   40.0   6.0    3.0  3  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   6.0   1.5e-14   6.3e-11      20     138 ..      53     182 ..      41     193 .. 0.64
   2 !   39.8   3.7   1.7e-14   7.2e-11     248     392 ..     193     334 ..     139     340 .. 0.65
   3 ?   -2.8   2.9      0.15   6.2e+02     130     221 ..     375     460 ..     346     480 .. 0.54

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 1.5e-14
   TIGR00599  20 LapldtslRChvCkdffkaPv.ltsCsHtFCslCiRrcL........seepkCPlCraedqEskLRknfvveEive.sfknlRksllellrvekttkv.esedlaapessskkklieeeeakgvdeesed 138
                  ++ld+++RC++C   f++ v +  C+HtFCs+CiR++         ++e  CPlCr       + k  v++  v+ s k  ++ ll   r   t      +     +   kk++ +e+   ++d+ +++
  MMETSP1061-20121228|7953_1  53 FQDLDETFRCRICSRLFNKAVsIKECGHTFCSVCIRSYWmevrsgthRQERSCPLCRRIVGVMDVDKALVMNRSVQdSVKCFKQLLLSHHRSSTTNDPhSIPSGCDTQRRRKKRKASENVYYNEDGSEKK 182
                 678**********99887766599************9863333333356889*****7655555555555544443244444556777777666555323344334444455566666666666655554 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 1.7e-14
   TIGR00599 248 kyldelmskereRLPklnysllkdsklrkkLselGlstnGsrqllqkRhkewvtLwnsncDskePvkkreLlRqLleWertqgktpqas...gnkggisklmlvkskdktgaekklkkfngkeWevayakdFadLikeAkqkikrstl 392
                 + l++l+ k   ++   ny+ +k+++lr+  +e  ++t+G+ q l  R +++  +wn+ +D  +P+  ++L  +L +   +q++  + +   g  g ++ +  ++++ k+g ++     ++ ++ ++ + +F+ L+++ ++++k+++ 
  MMETSP1061-20121228|7953_1 193 DDLQDLPIKR--KMQPRNYARMKKTELRRLCKEYDIPTTGTEQDLMDRMRKFQSMWNAEVDGIDPKTPSDLAAELKNEMHAQQEEKNRAlftGAAGNMKCIEKLNENIKSGNVTS----GNIDFDKKMKANFNSLVNQLRERMKKDSG 334
                 2333344332..34456**********************************************************9877766655544411133333343444444444444444....7778999999***********99997764 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 0.15
   TIGR00599 130 kgvdeeseddlrsasssraaakkktadilqlssdtskrndkdyrsekpdedlvqCPiCsqlvkekaverhldseClgspsagasktkPiesk 221
                 ++  ++ + d  s   +r++ + ++     ++   +k+ ++ +  +    ++ +  + +++  +k+++      C+gs   +++++kP++  
  MMETSP1061-20121228|7953_1 375 ESSSNAIHLDSSSDDTERNLDETRMKLRSAVI---TKNKQNAFARDSLSPNVLPSSAGQKFQARKKLKSATIITCTGS---ASDERKPAKRS 460
                 22222222222222333333332222222222...2233333443444557788888888888888888887778888...35677777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2497.64
//
Query:       MMETSP1061-20121228|7949_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.1   0.0     0.0015   15.6   0.0    1.2  1  TIGR00732 dprA: DNA protecting protein DprA


Domain annotation for each model (and alignments):
>> TIGR00732  dprA: DNA protecting protein DprA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.8e-07    0.0015      44     112 ..     188     261 ..     153     276 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.8e-07
   TIGR00732  44 s...lkvaivGtRaptkygervtrklakelakkgvtivSGlAlGiDgaahkaalkeegkti..avlatgldkiy 112
                 +   +k+ i+GtR+++   ++  + la +l+ +g  +   +A G  +a+ + al++e + +  +vl+ ++ k  
  MMETSP1061-20121228|7949_1 188 QqgpQKYCILGTRHCSFLHQQIIELLAYALVLSGNHVYTSGAPGTNAATVRGALRAEREDLltVVLPQSFSKQT 261
                 2345899************************************************9988763368888887644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1574.44
//
Query:       MMETSP1061-20121228|7954_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2120.93
//
Query:       MMETSP1061-20121228|7957_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1851.97
//
Query:       MMETSP1061-20121228|7959_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 755.94
//
Query:       MMETSP1061-20121228|7955_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-44  148.5   0.0    4.3e-44  148.1   0.0    1.2  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J


Domain annotation for each model (and alignments):
>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.1   0.0     1e-47   4.3e-44       1     188 []      10     213 ..      10     213 .. 0.90

  Alignments for each domain:
  == domain 1    score: 148.1 bits;  conditional E-value: 1e-47
   TIGR00438   1 dkyykkakkekyrsrasfkllqlnekfklikkGklvldlGaaPGGWsqvavek.vgek........GlviavdlqpvkpienvdfirGdftdeevlekilervgdd.......kvdvvisdaaPnlsGirdidhlrsidlvelaldiakevlkekGnfvvkvfqGeeldeylkelrklfekvkvrkPeasrkrsaevyivakrf 188
                 d +y++ak ++yr+r++fkllql+ +f+l+    + +dl aaPG Wsqv  +k v+ k         +++avdlqp+ pi++v  i+Gd+t  e+ ++ile  g +       ++++vi d aP+++G +d+d     +l   a++i+++vl ++G fv+k+f+G +  ++  +lr lf+ v + kP +sr+ s e ++v+++f
  MMETSP1061-20121228|7955_1  10 DVFYRRAKEKGYRARSAFKLLQLDSEFNLFEGVARAVDLCAAPGSWSQVLSDKlVATKprslddtsTKIVAVDLQPMAPIDGVLCIQGDITSYETAQAILEPFGCSdgtsdgnRAELVICDGAPDVTGLHDLDEYLQAQLLISAVKITTHVLVDGGTFVAKIFRGRHASQLYSQLRLLFDRVSIAKPTSSRNSSLESFVVCQQF 213
                 89***********************************************9876245442222222257********************************98763333445669**************************************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1495.88
//
Query:       MMETSP1061-20121228|7958_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2776.17
//
Query:       MMETSP1061-20121228|7960_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 811.73
//
Query:       MMETSP1061-20121228|7961_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-09   32.3   0.0    7.2e-09   32.2   0.0    1.0  1  TIGR01057 topA_arch: DNA topoisomerase I


Domain annotation for each model (and alignments):
>> TIGR01057  topA_arch: DNA topoisomerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   1.8e-12   7.2e-09     299     367 ..       2      77 .]       1      77 [] 0.76

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 1.8e-12
   TIGR01057 299 aqelyeealisyPrtssqklPksinyrkilknl......akkPlyreaaellk.ekgel.kPveGkkedpahPaihp 367
                 a++ly+ +lisyPrt++ ++ ++ ++++ l+++      a  P y  +a++l+ e+g +  P  G+ +d+ahP i p
  MMETSP1061-20121228|7961_1   2 AEQLYQSGLISYPRTETERFRPEFDHHALLRDFcglgdaASGP-YAAYANRLLhENGFFqTPRAGQHDDQAHPPITP 77 
                 89**************************999863333313455.55566655505565526************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 534.90
//
Query:       MMETSP1061-20121228|7966_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 553.10
//
Query:       MMETSP1061-20121228|7964_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1265.27
//
Query:       MMETSP1061-20121228|7962_1  [L=649]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (649 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 2676.90
//
Query:       MMETSP1061-20121228|7963_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-10   37.9   0.0    2.3e-10   36.8   0.0    1.4  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0034   14.7   0.0     0.0074   13.6   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   1.1e-13   2.3e-10      85     184 ..     313     412 ..     303     419 .. 0.84
   2 ?   -4.1   0.0      0.24   4.9e+02     725     769 ..     534     576 ..     508     577 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 1.1e-13
   TIGR03903  85 mlqvLDalaaahdaGvvhRDLkPqnimvsaadv..eshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLt 184
                   q+  al   h + +v+RDLkP+n+ +  +++  ++  ++ DFG+    p++    e ++      +G+  Y +Pe   g     k+D+Y+W +++   +t
  MMETSP1061-20121228|7963_1 313 ARQIASALEYLHGRDIVYRDLKPDNVGLLYSGQteKPIVQLFDFGLCREIPEASP-PEDKVF-HMSGVGTRRYMSPEVYLGQHYNVKADVYSWAIVFHSMIT 412
                 569999*******************9876666511677899***********999.444444.45569***************************9977666 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 0.24
   TIGR03903 725 GvpLfieelaRallealpgrdgelpsraqadrlalPlsLrdsLel 769
                  ++ f+ee +  l  ++   d+++++ +++++++l  +L   L++
  MMETSP1061-20121228|7963_1 534 TIANFMEEWTQVLCSGM--TDAQTNDSKKPTKKSLLRTLEAHLMA 576
                 57889999999999555..57788899999999999999888875 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.6e-06    0.0074      92     137 ..     309     360 ..     295     371 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.6e-06
   TIGR03724  92 elellkevGelvgklHkagivhgDlttsNiiv..k....ddklyliDfGLgk 137
                 +le++++++ ++  lH  +iv+ Dl + N+ +  +    +  + l DfGL +
  MMETSP1061-20121228|7963_1 309 KLEIARQIASALEYLHGRDIVYRDLKPDNVGLlySgqteKPIVQLFDFGLCR 360
                 3599*************************97644233223336689999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 2307.92
//
Query:       MMETSP1061-20121228|7971_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 869.58
//
Query:       MMETSP1061-20121228|7968_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1062.20
//
Query:       MMETSP1061-20121228|7972_1  [L=963]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.5   0.0      0.029   11.6   0.0    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     7e-06     0.029      49      94 ..     709     753 ..     690     782 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 7e-06
   TIGR02021  49 pkdslkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelark 94 
                 + ++++G+ v D GCG G     + + G  v + Dis  l+e + +
  MMETSP1061-20121228|7972_1 709 Q-NLPEGSIVADVGCGDGKYFPAIWEAGSYVIGTDISLPLLESSFD 753
                 3.5689*******************************999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (963 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.47
# Mc/sec: 2704.37
//
Query:       MMETSP1061-20121228|7969_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2196.68
//
Query:       MMETSP1061-20121228|7974_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 877.73
//
Query:       MMETSP1061-20121228|7975_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.6   0.1      0.017   12.4   0.1    1.2  1  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
      0.017   12.3   0.1      0.022   11.9   0.1    1.1  1  TIGR03441 urea_trans_yut: urea transporter


Domain annotation for each model (and alignments):
>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   8.3e-06     0.017       2      83 ..      33     112 ..      32     144 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 8.3e-06
   TIGR00888   2 lvldfgsqYaqliaRrlrelgvyselvpatttleeikevepkgiilsGgPesvkaenaekvdekifelgvPvlGiCyGmqll 83 
                 +vl ++    +  aRr       ++ +++t +  + + ++ + iils g   +++++  +++++     +Pv+ +C+ m + 
  MMETSP1061-20121228|7975_1  33 VVLSNKKPVHHQQARRNSRNSNRCNTIATTRS--NGHPIQSNPIILSIGGGAEQQQQQRQTKQTTTTTTIPVVVVCWLMVTT 112
                 56666665555555555444445554444443..3344556679999888888888999999999***********976554 PP

>> TIGR03441  urea_trans_yut: urea transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   1.1e-05     0.022     116     160 ..      96     138 ..      88     148 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.1e-05
   TIGR03441 116 paltmPfvlvtWllllasyafkllevdapvlpeaieevaaselal 160
                 ++ t+P v+v Wl++ ++ a k+++  ++ +++ i +++++++++
  MMETSP1061-20121228|7975_1  96 TTTTIPVVVVCWLMVTTAGASKSIN--QESISHCIAQTNNHHHHI 138
                 5789*******************99..788999998888555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1067.91
//
Query:       MMETSP1061-20121228|7967_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-44  147.9   2.9    1.2e-43  147.5   2.0    1.1  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
    6.4e-12   43.3  10.5    1.4e-11   42.1   7.3    1.6  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter
     0.0035   14.9   9.9      0.056   10.9   1.5    2.4  3  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.5   2.0     9e-47   1.2e-43       5     297 ..      99     396 ..      95     400 .] 0.89

  Alignments for each domain:
  == domain 1    score: 147.5 bits;  conditional E-value: 9e-47
   TIGR00817   5 llfllwyvlnvyFnivnkkllklf....hypvlktlvslavgvllellswss.ilkkrlkiskallklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk....sldkl.nlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyqqvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkak 297
                  +f+lwy+ n y+ni nk  l++       p++++ ++l vg ++ l+ w       ++k+ ++ l  +lpva++ +  h +s  ++++ avSf  ++ka ep+f +vls+ + g+ +  + +l L  +++Gv las++el f + +++sa i+n+   ++    Kk++ +      + ++ n +a+ +il ++l++p+  i eg ++ +  f++a +k +   ++ + +va    f  y+  a+ +l++  ++t sv+N+ KRv+vIv  +l++++ + +++ lG  + i Gv lYs + + 
  MMETSP1061-20121228|7967_1  99 AYFALWYLGNYYYNITNKLALNAAggkvGFPMTISSLQLGVGAIYGLFLWLApDARSKPKVTMQDLVKMLPVAFCFMGAHSASVFAMGMGAVSFAQIVKASEPAFAAVLSQYVYGKPISKAKWLCLPIVIGGVILASVKELDFAWSALISACIANMFAAFKGNENKKLMETPglkdRMGSIgNQFAITTILGFLLSIPVVAIREGSRFGE--FVEA-AKTT-PAIW-KNMVASGLWFYGYNECATLTLKKTGAVTQSVANTAKRVIVIVGVALVLGESLDPIKLLGCSIGIGGVLLYSIIDQL 396
                 68***************99998862222578999999************9652788999**************************************************************************************************************97777776666646788888888888999999999999866..9999.6654.4567.5566666699*************************************************************99875 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.1   7.3     1e-14   1.4e-11      26     264 .]     137     388 ..     125     389 .. 0.75

  Alignments for each domain:
  == domain 1    score: 42.1 bits;  conditional E-value: 1e-14
   TIGR00950  26 lifallllLpllrlr.......nslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvlliGall..llpfalllgpnlqalpa..tslqwlallyLgligtllayflynkg....lkevdasaasilalleplvallLgllilgetlslvqliggalilaavl 264
                 l ++++  L+l++++       +  ++l ++l +++ ++g+  +  ++a+    v++a ++ ++ P+++++ls+ +  + ++k k+l + +++ G v+l s ++l++ + +l+ + ++++ +A+     k+l+++ gl+  + +   +++i  +l  ll++ ++++++  +        +   +++  +++++l +  yn      lk+  a++ s+ ++++ +  ++   l+lge l++++l+g ++ +++vl
  MMETSP1061-20121228|7967_1 137 LGVGAIYGLFLWLAPdarskpkVTMQDLVKMLPVAFCFMGAHSA-SVFAMGMGAVSFAQIVKASEPAFAAVLSQYVYGKPISKAKWLCLPIVIGG-VILASVKELDFAWSALISACIANMFAAFKGNENKKLMETPGLKDRMGSIGNQFAITTILgfLLSIPVVAIREGSRFGEfvEAAKTTPAIWKNMVASGLWFYGYNECatltLKKTGAVTQSVANTAKRVIVIVGVALVLGESLDPIKLLGCSIGIGGVL 388
                 55556655666666666665766677777777777777776655.55699*********************************************.***************************************998766655445676665532244333333333332221002223335899999999999999999722224567888888888888777544445789************99999887 PP

>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.7     8e-05      0.11     192     280 ..     145     233 ..     100     234 .. 0.74
   2 !   10.9   1.5   4.1e-05     0.056      57     156 ..     156     256 ..     130     294 .. 0.71
   3 !    8.0   0.7   0.00033      0.45      63     133 ..     320     390 ..     307     398 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 8e-05
   TIGR03340 192 lllylkrrkraiveearqilasatlgglligsaYalvlyAmtllpvalvvalrevsivlavllgilllnekvtlkrllgvviivaGlvv 280
                 l l l+   r+  +  +q+l  ++  + +  +a +  ++Am +  v++   ++     +a++l+ ++++  +   + l   i+++G+++
  MMETSP1061-20121228|7967_1 145 LFLWLAPDARSKPKVTMQDLVKMLPVAFCFMGAHSASVFAMGMGAVSFAQIVKASEPAFAAVLSQYVYGKPISKAKWLCLPIVIGGVIL 233
                 45667777788888888888888888888888888888888888888777777777788888888888888888888888888888765 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 4.1e-05
   TIGR03340  57 aleaelwlllivsava..qvvYllglaqAYehadvglvYPlaRslPvlvaiaatlllgeeLsalaWlGillivlGllvlglskkaqsrrkalkwalvaalit 156
                 ++++++  l+ +  va   +   ++  +A   + v+++  +  s P + a+ + +++g+ +s  +Wl + +++ G ++l++ k+ +++  al  a +a ++ 
  MMETSP1061-20121228|7967_1 156 KPKVTMQDLVKMLPVAfcFMGAHSASVFAMGMGAVSFAQIVKASEPAFAAVLSQYVYGKPISKAKWLCLPIVIGG-VILASVKELDFAWSALISACIANMFA 256
                 455555555444333211455566777788888888887777777999999999999999999999988765555.45666666666666666665555554 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.00033
   TIGR03340  63 wlllivsavaqvvYllglaqAYehadvglvYPlaRsl.PvlvaiaatlllgeeLsalaWlGillivlGllvl 133
                 w+ +++s++    Y    +   +++  +++  +a +   v+v++++ l+lge+L +++ lG  + + G+l+ 
  MMETSP1061-20121228|7967_1 320 WKNMVASGLWFYGYNECATLTLKKTG-AVTQSVANTAkRVIVIVGVALVLGESLDPIKLLGCSIGIGGVLLY 390
                 55566666666666655555555543.55666666655799999*************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1649.86
//
Query:       MMETSP1061-20121228|7983_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 467.96
//
Query:       MMETSP1061-20121228|7981_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    5.7   8.5        2.3    5.2   5.9    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   5.9   0.00056       2.3      95     148 ..      60     113 ..      46     121 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00056
   TIGR00601  95 ptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdr 148
                  +p+ sa  as ++++s+ P+++++ ++ ++ ++++t+++++ + ++ e   +r
  MMETSP1061-20121228|7981_1  60 NSPSSSASSASKSTSTSKLPSTSTATSTATTTATATTTTTTPTPLVPKERTLKR 113
                 456667788888888888888888888888888888888888887776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1409.64
//
Query:       MMETSP1061-20121228|7976_1  [L=1031]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1031 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 3780.02
//
Query:       MMETSP1061-20121228|7985_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 609.66
//
Query:       MMETSP1061-20121228|7984_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 1093.62
//
Query:       MMETSP1061-20121228|7991_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-05   20.9  10.3    1.8e-05   20.5   7.1    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    7.5e-05   18.4   8.7     0.0001   17.9   6.0    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.035   11.9   0.7       0.26    9.0   0.2    2.1  2  TIGR01664 DNA-3'-Pase: DNA 3'-phosphatase
      0.079   10.0  12.1        0.3    8.1   8.4    1.8  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   7.1   1.7e-08   1.8e-05     286     502 ..     379     600 ..     372     608 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.7e-08
   TIGR02168 286 lqkelqelkaeisrleqeieilkerleqlekeleel...eeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkle.ea..eaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqen 502
                  ++++ +l++e++++ +++ +++++l+++e+ +++l   e+ql + ++k+   ++++++ ++ + +l  e++ ++ +lee +++++++e+++ ++++++++l ++v+   +q +++    e +e e+++l+e+++ ++++ ++ +k  + ++  + +++  +  + + ++ l++   +l ++ +  ++ +++ ++ +++l + + +  +l++++ sl+s+ +n
  MMETSP1061-20121228|7991_1 379 TDDTVRRLTNELNAVRRQLGKTQRELHRSETANKSLfrhEAQLSQMQAKNAPGQQQTNK-NDMIRSLHYEVAHMKVMLEETHRNWKASERTAMDWRNKYTDLDAKVQTSMKQGENIPISTEIYELEISKLKEELQHTQRSLQQYQKTTSsNIdsTLQRSYSSLPVGRFDNFLQTSVPTLMEMTKGNSKPSRSSRRHRSRLPDRSPKTYTLKSEILSLQSIYSN 600
                 56678889999999999999999999888887776522155555555555555555444.458999************************************************9999999988888888888877777666655444312300333333444456667777777777777777777777777777777777777777777777777776665 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   6.0     1e-07    0.0001     790    1002 ..     379     590 ..     369     600 .. 0.63

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1e-07
   TIGR02169  790 seekieeieeelekleeevsriearleeieaelnklelekelleeeiqelq...eeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeel.seleeevkeeeeepeeelslekvkkelekveeeleaLepvNmkAieeYeevekrldelkekrekLeeE 1002
                   ++ ++++++el++++ ++ + +  l+  e + ++l  ++++l+ ++q ++   +++ + ++ +++++ e++++k  lee++++ +  e    + ++++ dL ++++   ++ +++    e  e+ei k +++l++++  l++ ++   s++++++    + + + l +++  + l+     l+++ + N k      +   rl + + k  +L+ E
  MMETSP1061-20121228|7991_1  379 TDDTVRRLTNELNAVRRQLGKTQRELHRSETANKSLFRHEAQLS-QMQAKNapgQQQTNKNDMIRSLHYEVAHMKVMLEETHRNWKASERTAMDWRNKYTDLDAKVQTSMKQGENIPISTEIYELEISKLKEELQHTQRSLQQYQKTTsSNIDSTL----QRSYSSLPVGRFDNFLQTSVPTLMEMTKGNSKPSRSSRRHRSRLPDRSPKTYTLKSE 590 
                  45566677777777777777777777776666665553333333.333322011444445556677777888888888888888888888888888888888888888888888888888888888888888888887777766554414555533....333334566666666666666666666666666666666666666666666666555 PP

>> TIGR01664  DNA-3'-Pase: DNA 3'-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.2   0.00025      0.26      30      81 ..     462     515 ..     439     535 .. 0.77
   2 ?    0.3   0.0      0.13   1.3e+02      27      79 ..     560     612 ..     553     618 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00025
   TIGR01664  30 nkvfsrsasdWrfkfkevksklkeLedegyvivifsN..qsgiirvkksvekft 81 
                  k++ r a dWr k+++  +k+++  ++g  i i +   +++i ++k+ +++ +
  MMETSP1061-20121228|7991_1 462 WKASERTAMDWRNKYTDLDAKVQTSMKQGENIPISTEiyELEISKLKEELQHTQ 515
                 4667799***************************99822445555554444444 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.13
   TIGR01664  27 tksnkvfsrsasdWrfkfkevksklkeLedegyvi.vifsNqsgiirvkksvek 79 
                 tk n   srs+   r +  +   k ++L+ e   +  i sNq +++  + s+++
  MMETSP1061-20121228|7991_1 560 TKGNSKPSRSSRRHRSRLPDRSPKTYTLKSEILSLqSIYSNQVQVGYSP-SCTT 612
                 4456666778888888888999999999888777647********9998.6665 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   8.4   0.00029       0.3      40     227 ..     364     570 ..     340     590 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00029
   TIGR03752  40 aelspeelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiq.qaleaekkelkkekeqlkeeqakleelldelqkkle.................dvaaekesseedlpvglGleegdkaqseskdevvwvepsdakatdregk....ksapskesfpt.sfdnalkrkkkaleavakae..eaekaks 227
                 ++++p++++a+        dt+r l++el+++r++l k ++e ++ ++ n++l ++e ++++  + +a  +++++ +++++ l+ e+a+++ +l+e++++ +                   ++++ +++e++p++  + e + ++   k+e++ ++ s ++ ++++++    + + s  s+p  +fdn l+++  +l +++k++  +  +++s
  MMETSP1061-20121228|7991_1 364 KQITPQPIRAT--PTKSTDDTVRRLTNELNAVRRQLGKTQRELHRSETANKSLFRHEAQLSQMQAkNAPGQQQTNKNDMIRSLHYEVAHMKVMLEETHRNWKasertamdwrnkytdldAKVQTSMKQGENIPISTEIYELEISKL--KEELQHTQRSLQQYQKTTSSnidsTLQRSYSSLPVgRFDNFLQTSVPTLMEMTKGNskP--SRSS 570
                 66777777774..445678**********************************999999988555055555666777889999999999999999999888888888777777777765445555556666776654444444443..44444444333333333322233444455555554367888888888888888887441..3322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.85
# Mc/sec: 1153.74
//
Query:       MMETSP1061-20121228|7988_1  [L=682]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 2903.76
//
Query:       MMETSP1061-20121228|7979_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-79  264.3   3.9    4.3e-79  264.1   2.7    1.0  1  TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit
      1e-22   78.7   2.2    2.5e-22   77.4   1.5    1.7  1  TIGR03323 alt_F1F0_F1_gam: alternate F1F0 ATPase, F1 subunit gamma


Domain annotation for each model (and alignments):
>> TIGR01146  ATPsyn_F1gamma: ATP synthase F1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.1   2.7   2.1e-82   4.3e-79       1     286 []      26     305 ..      26     305 .. 0.96

  Alignments for each domain:
  == domain 1    score: 264.1 bits;  conditional E-value: 2.1e-82
   TIGR01146   1 maslkeirkrikSvkntkkITkAmklVaasklrraqerveaarpyaeklaevlknlaaklkevdhplllkkrevkkvlllvvtsdrGLcGgynsnvlkkveeklkelkeegkevklvviGkkgkeffkrr.einiaasvtglseqptfeeaqeiadklleafesgevdkveivynkfvsllsqeptvkkllplsekeeekkleeklefepdeeeilesLlprylesqiyrallesaasElaaRmtAMdnAtdNAkdlikkltlsyNraRQaaITqElieivaGasal 286
                 ma+ k+i ++i+S+kn+kkIT++mklV+a+kl+  ++r++aa p+    +e++++ +  +    +   + +  +kk+l++  tsd+GLcGg+ns + + v+e +k+l+ +gke +l++iG+kg+++++r+ ++ni++s t++++  t++ a+++a +l+ a  ++e+d+v +vyn +v++  ++   k + pl+++e+ ++   +++f+ +++e + +L ++ l++q+y+++++saa+E++aRmtAM+nA++NA+++i++ltl yNraRQa IT+Eliei++Gasa+
  MMETSP1061-20121228|7979_1  26 MATEKQIFNQIQSTKNIKKITSSMKLVSAAKLKGDENRLAAATPFNSWSYEIYSEPTLLE----DA--TFEDVPKKTLIVPFTSDKGLCGGINSFISRGVREMVKTLASQGKESDLLIIGDKGRAQMRRTlGDNITRSATEVQSPGTYSLASALATELIVAG-AEEYDAVVLVYNSYVNAAVYNQMYKVVTPLQASEDGTEVLPTYDFDSEKAEAMSDLYEFILSTQLYHSFMDSAAAEQSARMTAMENASNNANEMIDSLTLRYNRARQARITTELIEIISGASAI 305
                 8999*************************************************9987733....33..3445589************************************************************************************997.99********************************99999***********************************************************************************96 PP

>> TIGR03323  alt_F1F0_F1_gam: alternate F1F0 ATPase, F1 subunit gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   1.5   1.2e-25   2.5e-22       5     284 ..      36     304 ..      32     305 .. 0.75

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 1.2e-25
   TIGR03323   5 iesaadLksvvrtmkalaavsirqYedavraLddYyetveLGLavvlreeelaaasasgkskkesgktgaivlGsDqGlvGqfnevlle...fvveelaelkgekevwavGer....vasrledsglkieelfalPnsvkaitalvsellievekvreqeelaelllffnrkesgasYeptsqrlLPlDeaWkkqlakkkWptkclPe..llgekeetlsalireylfvsLfraaaesLasenasrlaamqraeknidelldeLnrrfhrlrqsaideeLfdvvsGfea 284
                 i+s +++k +   mk ++a++++  e+   a + +++      +++ + + l++a      + + +kt ++ + sD+Gl+G  n  ++     +v++la++ +e+ ++++G++    +  +l d+ ++     + P +    +al +el+++       ee   + l +n+  ++a Y++  + + Pl ++        +  t+ lP+  + +ek e++s l +  l + L++++ +s a+e ++r++am  a  n +e+ d+L+ r++r rq+ i+ eL++++sG  a
  MMETSP1061-20121228|7979_1  36 IQSTKNIKKITSSMKLVSAAKLKGDENRLAAATPFNSW---SYEIYSEPTLLEDA----TFEDVPKKTLIVPFTSDKGLCGGINSFISRgvrEMVKTLASQGKESDLLIIGDKgraqMRRTLGDNITRSATEVQSPGTYSLASALATELIVAG-----AEEYDAVVLVYNSYVNAAVYNQMYKVVTPLQAS--------EDGTEVLPTydFDSEKAEAMSDLYEFILSTQLYHSFMDSAAAEQSARMTAMENASNNANEMIDSLTLRYNRARQARITTELIEIISGASA 304
                 56666666666666666666666666666666555542...22222222222222....2345556788999***************8621156777778888999*****873333555677888888888888888888888888887764.....3445579999*******************8754........44566666522678888999999999999**********************************************************887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1500.76
//
Query:       MMETSP1061-20121228|7992_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.003   12.8   4.3     0.0044   12.3   3.0    1.2  1  TIGR03839 termin_org_P1: adhesin P1


Domain annotation for each model (and alignments):
>> TIGR03839  termin_org_P1: adhesin P1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   3.0   1.1e-06    0.0044     232     309 ..     145     223 ..     105     254 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.1e-06
   TIGR03839 232 geklaeatassassGsas.saarggasadtkakalkvevekgsdsesntqlqkndlaeapikrkeesgkivklkaekes 309
                  ++ + ++a+s++sG++   a+rgg s+ t +    +  + g+ s s+  +qk++ a++ ++ ++++++ v+ +  + s
  MMETSP1061-20121228|7992_1 145 KDTESSSAATSIASGTGAgKAKRGGVSSSTGVADASIASKAGQTSSSAIEIQKQQQAKKELELQQQNQDGVQSRGGQTS 223
                 23335566777777776514689***************************************99999888887766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1699.36
//
Query:       MMETSP1061-20121228|7994_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 835.93
//
Query:       MMETSP1061-20121228|7996_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.35
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|8000_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.30
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|8002_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.27
# Mc/sec: 317.75
//
Query:       MMETSP1061-20121228|8003_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 691.37
//
Query:       MMETSP1061-20121228|7999_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1137.14
//
Query:       MMETSP1061-20121228|8007_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 491.96
//
Query:       MMETSP1061-20121228|8009_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 1000.92
//
Query:       MMETSP1061-20121228|7998_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00048   17.4   0.1    0.00065   16.9   0.0    1.1  1  TIGR00065 ftsZ: cell division protein FtsZ


Domain annotation for each model (and alignments):
>> TIGR00065  ftsZ: cell division protein FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.6e-07   0.00065     205     325 ..      79     208 ..      77     226 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.6e-07
   TIGR00065 205 lItkpglinvDFaDvravmskkGvaligigeak......gedkakraeeavrkaisspllekakisgakgvlvnitggadltleeaeeive..iikseldqeanviwgasideel.edelrvtvvatgvk 325
                 l+  + l +vD a v   ++++G+ ++ +g+        g+ ++k ++   ++ai+  ++ +a+  +++++++n+ gg+dl+l e+ e+ +  +++ ++  +a++ + ++ ++ + +++  vtvv  g +
  MMETSP1061-20121228|7998_1  79 LLRYNKLSSVDEAAVENALKTSGSSILCTGQGVelykepGQTTNKEVFFGPQEAIKDAIATAASAMESNALVFNFLGGDDLMLGEVLEASSdlVVALDIATKAQITFNSVSHRSIpSGTCAVTVVSVGDA 208
                 66667788999999*********99876665431222225566666666779**********************************998763367889999**********9999889999999988755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1405.97
//
Query:       MMETSP1061-20121228|8005_1  [L=732]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 2841.65
//
Query:       MMETSP1061-20121228|8012_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 2323.01
//
Query:       MMETSP1061-20121228|8016_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 1176.90
//
Query:       MMETSP1061-20121228|8017_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       321  (0.0782545); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2252.61
//
Query:       MMETSP1061-20121228|8013_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   19.4   0.0    0.00022   18.6   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0096   12.7   0.1      0.019   11.8   0.1    1.4  1  TIGR02906 spore_CotS: spore coat protein, CotS family
  ------ inclusion threshold ------
      0.019   10.5   0.0      0.024   10.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.6e-07   0.00022      97     137 ..     265     306 ..     252     318 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.6e-07
   TIGR03724  97 kevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgk 137
                 +++ ++++ l k+g++h D+   Ni++ +dd+++liD GL+ 
  MMETSP1061-20121228|8013_1 265 QQLLQAINLLQKKGVCHRDISLDNILLdEDDNICLIDPGLSL 306
                 566678999******************66899********95 PP

>> TIGR02906  spore_CotS: spore coat protein, CotS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.1   1.4e-05     0.019     186     211 ..     275     301 ..     264     304 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.4e-05
   TIGR02906 186 kkrglcHqDyayhNillkd.nevyviD 211
                 +k+g+cH+D++  Nill++ +++ +iD
  MMETSP1061-20121228|8013_1 275 QKKGVCHRDISLDNILLDEdDNICLID 301
                 78899**************999*9999 PP

>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   1.8e-05     0.024      36     129 ..     200     305 ..     162     373 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.8e-05
   TIGR03903  36 shPnivaLlDsGeaedgllFavFeyveG.............rtlr.evLaadGaLpaaetg.r.LmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGig 129
                 +hP++v  lD  + +d  l+++  y  G             r +r + L + G+    e + r    q L a+    ++Gv hRD+  +ni++   d   +  ++D G++
  MMETSP1061-20121228|8013_1 200 YHPHVVGALDVFQ-DDKCLYTIMPYCGGgclygrlvefmgyRSVRsDALDSSGTTGFDESSaRiWFQQLLQAINLLQKKGVCHRDISLDNILLDEDD---NICLIDPGLS 305
                 6777777777654.3336666665555411111111111114444345666666655554423246799***********************96554...4556676666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1918.24
//
Query:       MMETSP1061-20121228|8022_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 712.74
//
Query:       MMETSP1061-20121228|8020_1  [L=1001]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       310  (0.0755729); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 3570.84
//
Query:       MMETSP1061-20121228|8019_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-07   28.5   0.0     0.0019   15.3   0.0    2.7  3  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    2.3e-07   28.7   0.0    4.9e-07   27.6   0.0    1.5  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    0.00051   17.5   0.0       0.16    9.3   0.0    2.2  2  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
     0.0016   15.7   0.0      0.003   14.8   0.0    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0059   13.9   0.0      0.019   12.3   0.0    1.8  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0079   13.3   0.0      0.023   11.8   0.0    1.8  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.012   13.1   0.0          2    5.8   0.0    2.2  2  TIGR00740 TIGR00740: putative methyltransferase
      0.013   11.8   0.0      0.021   11.1   0.0    1.2  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
       0.04   11.1   0.0      0.088   10.0   0.0    1.5  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.1     5e+02     106     123 ..     168     185 ..     152     193 .. 0.78
   2 !   15.3   0.0   4.2e-06    0.0019      39      80 ..     214     257 ..     203     270 .. 0.86
   3 !   10.0   0.0   0.00019     0.085      99     145 ..     297     345 ..     274     367 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.1
   TIGR01934 106 sfdavtiafGlRNvtdie 123
                 ++++++ a G RN+ ++ 
  MMETSP1061-20121228|8019_1 168 EVEIASAAVGARNFPEYG 185
                 5789999******99885 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 4.2e-06
   TIGR01934  39 keekvlDvatGtGdlaielakkae..akvtgvDlseemLevakk 80 
                 ++ k++D  +GtG  + +lak+ +   +++gvDls+    ++k+
  MMETSP1061-20121228|8019_1 214 EPVKIIDFGCGTGMSTRRLAKNFPqaDEIIGVDLSPYFTTIGKR 257
                 6789*******************9999********998888875 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00019
   TIGR01934  99 eLpfednsfdavtiafGlRNv..tdiekaLkelaRVlkpggrlvilefs 145
                 eL   + + dav i f l  +  +  +  ++e++R lkpgg+l i+e+ 
  MMETSP1061-20121228|8019_1 297 ELNGIEGTADAVNIQFVLHELppEAARDMVDEAFRLLKPGGQLWICEMD 345
                 555556677888888888887223567789***************9975 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.1e-09   4.9e-07      34      75 ..     214     256 ..     205     292 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 1.1e-09
   TIGR02072  34 epakvLdiGcGtGiltrallkrfpqae.lialDiseemleqak 75 
                 ep k++d+GcGtG+ tr l+k fpqa+ +i +D+s+  + + k
  MMETSP1061-20121228|8019_1 214 EPVKIIDFGCGTGMSTRRLAKNFPQADeIIGVDLSPYFTTIGK 256
                 5679********************9877******998766655 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00035      0.16      45      88 ..     214     257 ..     205     265 .. 0.89
   2 !    5.8   0.0    0.0041       1.8     111     150 ..     301     342 ..     289     366 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00035
   TIGR02752  45 kgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgke 88 
                 +  k++d  cgt+  +  la++  +  e++g+d+s  + ++gk+
  MMETSP1061-20121228|8019_1 214 EPVKIIDFGCGTGMSTRRLAKNFPQADEIIGVDLSPYFTTIGKR 257
                 556889******************************99999986 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0041
   TIGR02752 111 ednsfdyvtigfglrnvpdy..lqvlkemarvvkpggkvvcl 150
                  + + d v i f l ++p     +++ e  r++kpgg++   
  MMETSP1061-20121228|8019_1 301 IEGTADAVNIQFVLHELPPEaaRDMVDEAFRLLKPGGQLWIC 342
                 5678999*********9965115799************8544 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   6.5e-06     0.003      56      88 ..     216     251 ..     205     262 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 6.5e-06
   TIGR02021  56 kkvlDAGCGtGllsielAk...rGaivkavDisekl 88 
                 +k++D GCGtG+ + +lAk   +  ++ +vD+s+ +
  MMETSP1061-20121228|8019_1 216 VKIIDFGCGTGMSTRRLAKnfpQADEIIGVDLSPYF 251
                 79****************944346678899998765 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   4.1e-05     0.019      88     123 ..     214     250 ..     197     286 .. 0.80
   2 ?   -1.9   0.0      0.87   3.9e+02     198     222 ..     322     347 ..     320     359 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.1e-05
   TIGR03534  88 eklkvlDlgtGsGaIalalakelpda.kviavDisee 123
                 e++k++D g+G+G+ +  lak++p+a ++i+vD+s+ 
  MMETSP1061-20121228|8019_1 214 EPVKIIDFGCGTGMSTRRLAKNFPQAdEIIGVDLSPY 250
                 479*********************9956999**9985 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.87
   TIGR03534 198 yrriaeeaakllkegglll.lEigek 222
                  r +++ea +llk+gg+l+ +E++++
  MMETSP1061-20121228|8019_1 322 ARDMVDEAFRLLKPGGQLWiCEMDFE 347
                 6889999********99852687765 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0     5e-05     0.023      50      88 ..     215     256 ..     196     408 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5e-05
   TIGR01983  50 glkvlDvGcGgGllseslarlgae...vtgiDlseelievAk 88 
                  +k++D GcG G+ +  la++  +   ++g+Dls    ++ k
  MMETSP1061-20121228|8019_1 215 PVKIIDFGCGTGMSTRRLAKNFPQadeIIGVDLSPYFTTIGK 256
                 589*****************865555799***9976666555 PP

>> TIGR00740  TIGR00740: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0    0.0045         2      56      90 ..     217     250 ..     203     265 .. 0.86
   2 ?    5.0   0.0    0.0078       3.5     122     161 ..     304     343 ..     277     359 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0045
   TIGR00740  56 lvydlGcslGaatlsvrrniqqdevkligidnsqp 90 
                 ++ d+Gc +G  t  + +n  q   ++ig+d s+ 
  MMETSP1061-20121228|8019_1 217 KIIDFGCGTGMSTRRLAKNFPQ-ADEIIGVDLSPY 250
                 799******************9.669*****9875 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0078
   TIGR00740 122 easavvlnfvlqflepeereallkkiyeglnlnGvlvlse 161
                  a av ++fvl  l+pe  + +++  ++ l+++G l + e
  MMETSP1061-20121228|8019_1 304 TADAVNIQFVLHELPPEAARDMVDEAFRLLKPGGQLWICE 343
                 58899*******************************9987 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   4.7e-05     0.021     285     328 ..     217     261 ..     205     269 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 4.7e-05
   TIGR04074 285 svlDlGcGegkLlkaLlae.kqfekivgvdvsareLekakrrlkl 328
                 +++D+GcG g   ++L+++  q+++i+gvd+s    ++ kr l+l
  MMETSP1061-20121228|8019_1 217 KIIDFGCGTGMSTRRLAKNfPQADEIIGVDLSPYFTTIGKRLLEL 261
                 79***************98579*********98777777766665 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00019     0.088      20      49 ..     218     248 ..     210     265 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00019
   TIGR00091  20 vleiGcGkGrfliklAkqnpe.knflGiEie 49 
                 +++ GcG G +   lAk++p+ ++++G+ + 
  MMETSP1061-20121228|8019_1 218 IIDFGCGTGMSTRRLAKNFPQaDEIIGVDLS 248
                 79******************83579999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2279.35
//
Query:       MMETSP1061-20121228|8025_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|8026_1  [L=898]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-139  463.2   0.0   3.6e-139  462.6   0.0    1.2  1  TIGR00463 gltX_arch: glutamine--tRNA ligase
   2.8e-102  341.1   0.1   4.9e-101  337.0   0.1    2.0  1  TIGR00440 glnS: glutamine--tRNA ligase
    7.3e-27   92.2   0.2    7.3e-27   92.2   0.2    2.1  2  TIGR00464 gltX_bact: glutamate--tRNA ligase
    7.8e-17   59.4   0.2    7.8e-17   59.4   0.1    1.6  2  TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase
     0.0062   14.0   0.2      0.012   13.0   0.1    1.5  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR00463  gltX_arch: glutamine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  462.6   0.0  4.4e-142  3.6e-139      78     547 ..     370     866 ..     329     881 .. 0.91

  Alignments for each domain:
  == domain 1    score: 462.6 bits;  conditional E-value: 4.4e-142
   TIGR00463  78 kkakklieLedakkgevvlrfaPnPsGplhiGharaailnqefakkYeGklilrldDtdPrrekeeaydsileDldlLGvkvDevvyqsdrielyYdYarkliedGkaYvcdcsteefrelrnkGvackrrdrsveenLevweemlegeeeeekvvvrvktDlkhknpairDfvifriektehprtGdkykvYPlldfsvaidDhllGvthvlrgkdyidnerkqeYiykylglelpevkhygrlkiedvraLstsskkkgikegey.sGWDDprlptlralrrrGikpeairelllslGvkeadvklswkklyalnkkiidkearryffivn..Pvkleieglp..ekkleekPlhpdkpevGerklilekeiyvdkDdlevl.edeevrLmdlvnvilekkeddgskyaseel.egarkkgkkiihWlpekdavkvkvidedaeiakglvekdaskv......................evddvvqferfgfvrlds 547
                   + ++  Le+a  g+vv+rf+P+PsG+lh+Gha+a +ln+++a++Y+G++i+r+dDt+P++ekee + si eDl  LGvk D +vy+sd+i  +  Ya ++ie+G+aY++d+++e+++e+r + v++k+r+++  e   ++eem  g+ee+++ ++r+k+D+   n ++rD+v +r + t+h+rtG++yk YP++d + +i+D l+Gvth+lr+ +y d  r ++Y + + +l l++v+++ + ++++  ++++++k+ + +e+++ sGW+D+r+pt+r++ rrG+   a+++ + s+G ++ +v++ w+  +a+nkk +d +arr++++       l+i + +  ++  +   lhp+ p +G+r l+l+ ++ +++ d++   e+e++ L+ ++ + ++kk +d   + +e + +g++k  k+++ W+ ++    + + ++d+  +k+ +e+   ++                      + +dv+q+er gf+r+d 
  MMETSP1061-20121228|8026_1 370 PLETGMNLLEGAIPGQVVTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRMIVRFDDTNPSKEKEEYQKSIVEDLKTLGVKNDVLVYTSDYIGAIQKYALRMIEKGQAYMDDTPQEQMKEERANRVESKHRNQAPAEAKALFEEMCSGSEEGGRWCLRAKIDMSSDNGTMRDPVLYRQNLTPHHRTGTTYKAYPTYDLACPIVDSLEGVTHALRTTEYND--RDEQYQHLLKTLGLRRVRIHAFCRMNFQYTVLSKRKLTWFVEQNLvSGWNDARFPTVRGVLRRGVSIPALKKYIYSQGASRRVVNMVWNSFWAENKKELDVTARRFMAVDAnaNATLTITNFEdsGETYVSTSLHPKDPSMGNRPLKLSSKVLLEQGDAQDCaEGENIVLLRWGVIKITKKSEDSKTLEGEVVpDGDFKACKRKLSWMIASGGCATTLTEFDHLVTKEKLEEGDKFEdfvnpntiattsaigdpclktlQEGDVIQLERRGFYRVDR 866
                 44556667999999************************************************************************************************************************************************************************************************************99..99999999999999*************************998876268***********************************************************99641145799999774567888999*********************987777666******************999888888776579************************************999999********************999***************7 PP

>> TIGR00440  glnS: glutamine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  337.0   0.1    6e-104  4.9e-101       1     502 [.     386     866 ..     386     880 .. 0.93

  Alignments for each domain:
  == domain 1    score: 337.0 bits;  conditional E-value: 6e-104
   TIGR00440   1 vrtrfppepnGylhiGhaksillnfGlakeykGtcnlrfddtnpvkedveyvesikrdvewlGfkwegkvryssdyfdelyalavelikkGlayvdeltaeeireyrGiledpGkaskyrdrsieenlalfekmrdGkfkeGkailrakidlaspfivmrdlvlyrikfaehhrtGdkwriypmydfthclsdalenithslctlefqdnrrlydwvldnisievrpaqyefsrlnlegtvlskrklaklvddkfveGwddprlptlsalrrrGvtpasirefikrlGvtkqdnvievaalesairedleenapramavldp..vkvvienledeae.lvtipnrpnkpelGerqvpftkelyidradfreeadkeykrlvlgkevrlrnayvikaervekdaeGkiitifvtydaevlskepadgrkvkgviqwvsisskypaeirlydrlfkvenpgaeddflsvinpeslvikegvveqsladavaekafqfereGyftlds 502
                 v trfppep Gylh+Ghak+ lln  +a+ ykG+  +rfddtnp ke+ ey +si +d++ lG k    + y+sdy+ ++ ++a  +i+kG+ay+d+   e+++e r  +     +sk+r+++  e  alfe+m +G  + G+ +lrakid++s    mrd+vlyr   ++hhrtG+ ++ yp+yd++  ++d+le++th+l t+e++d  + y+ +l+ + +  r + + f r+n+++tvlskrkl+ +v++++v+Gw+d r+pt+ ++ rrGv+  +++++i   G +++  ++   ++ +  +++l+ +a r mav       + i n+ed +e  v+   +p+ p +G+r + +++++ +++ d ++ a+ e         v+lr   vik+ +  k ++ k        + ev      d +  k  + w+ +s    + +  +d+l + e   + d f++ +np+++    ++ ++ l+  ++++  q+er G++ +d 
  MMETSP1061-20121228|8026_1 386 VVTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRMIVRFDDTNPSKEKEEYQKSIVEDLKTLGVKN-DVLVYTSDYIGAIQKYALRMIEKGQAYMDDTPQEQMKEERANRV----ESKHRNQAPAEAKALFEEMCSGSEEGGRWCLRAKIDMSSDNGTMRDPVLYRQNLTPHHRTGTTYKAYPTYDLACPIVDSLEGVTHALRTTEYNDRDEQYQHLLKTLGLR-RVRIHAFCRMNFQYTVLSKRKLTWFVEQNLVSGWNDARFPTVRGVLRRGVSIPALKKYIYSQGASRRVVNMVWNSFWAENKKELDVTARRFMAVDANanATLTITNFEDSGEtYVSTSLHPKDPSMGNRPLKLSSKVLLEQGDAQDCAEGENI-------VLLRW-GVIKITK--KSEDSKT------LEGEVV--PDGDFKACKRKLSWMIASGGCATTLTEFDHLVTKEKLEEGDKFEDFVNPNTIATTSAIGDPCLKTLQEGDVIQLERRGFYRVDR 866
                 67***************************************************************9.6788************************************9886....59**********************************************************************************************************9.9999*****************************************************************************************9654126799*********99999**************************9999886533.......34444.4666554..4444443......344444..345666788889********************************************************************9994 PP

>> TIGR00464  gltX_bact: glutamate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.6      0.13   1.1e+02     379     430 ..      66     118 ..      11     131 .. 0.64
   2 !   92.2   0.2   8.9e-30   7.3e-27       2     258 ..     386     637 ..     385     641 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.13
   TIGR00464 379 edakkklek.kevkevleklkkklealeeltaeevesaikevaeelelkkkkl 430
                 e+ kk+++k  ++++  ++  ++ e++ +++a+++e+a k++a++ +lk++  
  MMETSP1061-20121228|8026_1  66 EKGKKEKKKeGDAQAQQANQVASAENAAKKAAKKAEKAAKKAAHKAGLKTGAA 118
                 33344433324455555555556677777788888999999999999988765 PP

  == domain 2    score: 92.2 bits;  conditional E-value: 8.9e-30
   TIGR00464   2 vrvRfAPSPTGylHiGglRtAlfnyllAkntngeFllRiEDTDkeRnieeaeeeileilkwlgiewdegpylQskrldiykklikeLleegkAYrCycskEeLeklreeqkakketprYdrkcrnleeeeiekklakgekpvvRlkipeeae.vsfnDlvrgeiklenselddlvilksdglptYnlavvvDDllmkithviRgedhisntpkqillykAlgakipkfaHlplildeegkKLSKRdgatsieqfkeqG 258
                 v +Rf P P GylH+G +++ l n  +A++ +g+ ++R +DT  ++++ee++++i+e lk lg++ d  +++ s+ +   +k++ +++e+g+AY     +E++ ++r +  ++k+  +   + + l ee   +  ++g +  +R ki+ +++  +  D v  + +l +++ +          ptY+la+ + D l ++th +R  ++     +   l+k lg +  + +H    ++ +   LSKR+ + ++eq   +G
  MMETSP1061-20121228|8026_1 386 VVTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRMIVRFDDTNPSKEKEEYQKSIVEDLKTLGVKND-VLVYTSDYIGAIQKYALRMIEKGQAYMDDTPQEQMKEERANRVESKHRNQAPAEAKALFEEM-CSGSEEGGRWCLRAKIDMSSDnGTMRDPVLYRQNLTPHHRTGT---TYKAYPTYDLACPIVDSLEGVTHALRTTEYNDRDEQYQHLLKTLGLRRVR-IHAFCRMNFQYTVLSKRKLTWFVEQNLVSG 637
                 89*****************************************************************.9999**********************999999999999999888888888888888887776.6677888889999999876641467777777777777776654...45589**************************99999999******99444.5666666888889*****999999976666 PP

>> TIGR03838  queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.6   1.8         5   4.1e+03     231     248 ..      87     104 ..      67     121 .. 0.42
   2 !   59.4   0.1   9.5e-20   7.8e-17       2     235 ..     387     626 ..     386     639 .. 0.84

  Alignments for each domain:
  == domain 1    score: -6.6 bits;  conditional E-value: 5
   TIGR03838 231 sKqngakaldesepeaal 248
                 +  ++a++ +++++e+a 
  MMETSP1061-20121228|8026_1  87 ASAENAAKKAAKKAEKAA 104
                 222222222222222222 PP

  == domain 2    score: 59.4 bits;  conditional E-value: 9.5e-20
   TIGR03838   2 vGRfAPsPtGpLHlGslvaalasyldaraaggkwlvRieDlDtpRevpgaaeeilatLealglewDeevvyQserkelYqaalerlkaaglaYpCactRkeiaaa.............ereeelvypgtcreglkekeareaalrlrveeeevafeDrlqgeleqdlaaevgdfvlrRadglfaYqLavvvDDaeqgvtevvRGaDLlestarQilLqrlLglptpeylHlPlvlnadGekLsKqng 235
                 v Rf P P+G LH+G + a l+    ar+ +g+ +vR++D  + +e+++++++i+++L++lg++ D   vy s+   + q+   r+ ++g+aY      +++++              ++e ++ ++ +c  ++++ +      ++ +++ + +++D ++ +++ + ++++g         + +Y+La+ + D  +gvt+ +R ++  +   +  +L ++Lgl++++ +H    +n + + LsK++ 
  MMETSP1061-20121228|8026_1 387 VTRFPPEPSGYLHVGHAKACLLNDYYARRYKGRMIVRFDDTNPSKEKEEYQKSIVEDLKTLGVKNDVL-VYTSDYIGAIQKYALRMIEKGQAYMDDTPQEQMKEEranrveskhrnqaPAEAKALFEEMCSGSEEGGRWC-LRAKIDMSSDNGTMRDPVLYRQNLTPHHRTGTT----YKAYPTYDLACPIVDSLEGVTHALRTTEYNDRDEQYQHLLKTLGLRRVR-IHAFCRMNFQYTVLSKRKL 626
                 78**************************************************************9975.5677788888888888999***********99999999999887777666666777777777643222222.334566677778999999999999999999875....6789*******************************99********9988.5777777777777777765 PP

>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   1.5e-05     0.012     141     203 ..     281     347 ..     212     351 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.5e-05
   TIGR01262 141 alEellkekagafcvGdevtladvcLvpqv......ynAerfevdlaqyPtlkrieealaelpafqeah 203
                 +lE+ l+  + +++ G +++ladv L +++          r++  l+++P+ +r ++ +a++pa+++a+
  MMETSP1061-20121228|8026_1 281 TLEHALS--KRTYVCGHKISLADVALFAALgfpcalEDKIRVATALEDFPIATRWTAMMAAHPALKRAT 347
                 3455444..467*************98654222111666799************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       324  (0.0789859); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.13s 00:00:00.64 Elapsed: 00:00:00.43
# Mc/sec: 2756.42
//
Query:       MMETSP1061-20121228|8027_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1888.81
//
Query:       MMETSP1061-20121228|8030_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.36
# Mc/sec: 311.64
//
Query:       MMETSP1061-20121228|8031_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.2   0.1      0.033   11.9   0.0    1.1  1  TIGR02826 RNR_activ_nrdG3: anaerobic ribonucleoside-triphosphate reductase activating protein


Domain annotation for each model (and alignments):
>> TIGR02826  RNR_activ_nrdG3: anaerobic ribonucleoside-triphosphate reductase activating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     8e-06     0.033     102     141 ..      48      87 ..      38      96 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8e-06
   TIGR02826 102 dlslelvqhldylklGryietlgglksptt.NQrfidlrte 141
                 d s +++++l+ lk G y e+l +++      Q+f+ ++++
  MMETSP1061-20121228|8031_1  48 D-SETILRQLNVLKQGGYWEHLPREEDNDEnTQHFYSVQDN 87 
                 3.678899**************9999888835999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.33
# Mc/sec: 415.97
//
Query:       MMETSP1061-20121228|8033_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1014.23
//
Query:       MMETSP1061-20121228|8036_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1169.90
//
Query:       MMETSP1061-20121228|8034_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1400.03
//
Query:       MMETSP1061-20121228|8038_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 406.97
//
Query:       MMETSP1061-20121228|8032_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1573.72
//
Query:       MMETSP1061-20121228|8043_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       327  (0.0797172); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 485.25
//
Query:       MMETSP1061-20121228|8046_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 455.36
//
Query:       MMETSP1061-20121228|8042_1  [L=698]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       486  (0.118479); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 2424.43
//
Query:       MMETSP1061-20121228|8040_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1748.86
//
Query:       MMETSP1061-20121228|8035_1  [L=801]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   25.0   0.0     0.0012   15.6   0.0    2.4  2  TIGR00387 glcD: glycolate oxidase, subunit GlcD


Domain annotation for each model (and alignments):
>> TIGR00387  glcD: glycolate oxidase, subunit GlcD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0     3e-07    0.0012       1      82 [.     226     311 ..     226     371 .. 0.72
   2 !    6.9   0.0   0.00013      0.53     156     220 ..     457     522 ..     454     527 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3e-07
   TIGR00387   1 vvlPknteqvarilklCserrikvvprGagtglsGgalpeeg.....glvlvfkrlnkileideenltavvqPGvinkeleeaveek 82 
                 +v P++ +q+ +i++   +    v+ +G+ tgl+G+++p  +     ++v+ +k l+ i  id    ++v   Gv  ++l++ v+e+
  MMETSP1061-20121228|8035_1 226 IVRPNKLKQLQEIVREAADAGCAVLVQGSNTGLTGASVPRPQtdgrpTVVVSMKDLDTIFPIDGGA-RVVCLAGVGLASLKNFVAEN 311
                 58899*********************************9643122335788899999999999754.55667899999999988764 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00013
   TIGR00387 156 sEGtLgivteiilkllpkPelkkvllavfdsiekaaqavadiiaa..giiPaalEflDnlsikaved 220
                 sEG + i + +     p P+l+k+   +fds+e a++  +++  +  + iP+  E +D++s  ++++
  MMETSP1061-20121228|8035_1 457 SEGKVLILATV-HDTFPAPPLAKTYWISFDSLETATKFKTEVCLNnpEDIPVSCEYMDKDSFDVIDE 522
                 56655555443.356799*******************9999987722579***********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 2782.19
//
Query:       MMETSP1061-20121228|8051_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 718.61
//
Query:       MMETSP1061-20121228|8052_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 542.62
//
Query:       MMETSP1061-20121228|8050_1  [L=956]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-18   62.6   0.0    1.9e-17   61.2   0.0    1.7  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.1e-10   38.6   0.0    4.5e-10   37.4   0.0    1.5  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
      5e-09   33.8   0.0    1.1e-08   32.6   0.0    1.6  1  TIGR02415 23BDH: acetoin reductases
    4.4e-07   27.4   0.0    8.4e-07   26.5   0.0    1.4  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    5.1e-06   23.8   0.0    9.6e-06   22.9   0.0    1.4  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    7.4e-06   22.4   0.1    1.1e-05   21.8   0.0    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    2.5e-05   21.6   0.1    4.3e-05   20.9   0.1    1.4  1  TIGR01500 sepiapter_red: sepiapterin reductase
    3.6e-05   21.1   0.0    5.9e-05   20.4   0.0    1.3  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    0.00022   18.6   0.0    0.00038   17.8   0.0    1.4  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0   4.2e-20   1.9e-17       2     169 ..     651     826 ..     650     834 .. 0.88

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 4.2e-20
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle....eeaaeaaakeleeagg.evlalkadvtkeeeiadlieavaaefgs.ldiLvnnAGi.qhvapieefp.tekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvA 169
                 k++lvtGa++ +  + a+++aa Ga++++++ +    e+++e + +e++e g  +v  ++ad++++ + + +++++a+ef +  d+++ n     h    ee +  ++  k+++ n  + +++ + a++ + k+   ri+ ++s+ glvas++Ks Y a++H+l G+  ++ +E  
  MMETSP1061-20121228|8050_1 651 KSVLVTGANAPLASETARQFAAGGANLILVSHSsgssEDDMELLVEECQELGSsKVRSYSADLSNAVSAELVLREAAKEFEDtFDVVILNGENeSHGCLFEEIAdANQIGKMVKDNTIGCIIALHYAMKYIPKTPESRIVVLSSTSGLVASPYKSVYGATQHALKGFCDSVRMELN 826
                 89************************998877666778889999999998875268899*********************862699998876515666778875267899**********************************************************99998875 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0     1e-12   4.5e-10       1     167 [.     653     826 ..     653     830 .. 0.87

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 1e-12
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviter...skeekaeelaeelkeagv.kaaavkldvsdeeevkelveeveeelg.eidilvnnAGitrDklllr.mke.edwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakEla 167
                 +lvtGa+  + +++a+++a+ ga++++ ++   s+e+ +e l+ee +e g  k+ ++++d+s++ +++ +++e+ +e++ + d+++ n      + l + + + ++  +++k n  g     + ++k + k  + ri+ +ss  gl+ ++ ++ Y a++  l g+  s+  El 
  MMETSP1061-20121228|8050_1 653 VLVTGANAPLASETARQFAAGGANLILVSHssgSSEDDMELLVEECQELGSsKVRSYSADLSNAVSAELVLREAAKEFEdTFDVVILNGENESHGCLFEeIADaNQIGKMVKDNTIGCIIALHYAMKYIPKTPESRIVVLSSTSGLVASPYKSVYGATQHALKGFCDSVRMELN 826
                 69**********************9876541115677889999*****986378899***************9999987489****9998887776665254426889************************************************************999875 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   2.5e-11   1.1e-08       2     172 ..     652     829 ..     651     833 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 2.5e-11
   TIGR02415   2 valvtGaaqGiGkaiaerLakdGfavavadln....eetaketakelkekgt.kavavkldvsdkseveeaveqaveklG.eldvlvnnaGvalvtpi.lei.teeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkg 172
                   lvtGa   + ++ a+++a+ G +++++       e+ +   ++e +e g  k   +++d+s+  + e ++++a++++  ++dv++ n        + +ei + +++ k+ + n  g +  +  a++ +  +  + +i+  +s +g ++sp +s+y +t++a++g+  +   eL +++
  MMETSP1061-20121228|8050_1 652 SVLVTGANAPLASETARQFAAGGANLILVSHSsgssEDDMELLVEECQELGSsKVRSYSADLSNAVSAELVLREAAKEFEdTFDVVILNGENESHGCLfEEIaDANQIGKMVKDNTIGCIIALHYAMK-YIPKTPESRIVVLSSTSGLVASPYKSVYGATQHALKGFCDSVRMELNDNY 829
                 679**********************999988756645555556677777775256689*********************7369**9988777666655155525689****************99876.56667789*********************************999998876 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.8e-09   8.4e-07       7     185 ..     654     826 ..     649     833 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.8e-09
   TIGR03971   7 litGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGr.kvlarkadvrkleelravveegveefG.rldvvvanaGvlsygrafe..lseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanela 185
                 l+tGa        a ++aa Ga++i +            + ++++d++  ++  ++lG  kv +  ad+ +    + v++e+ +ef   +dvv+ n    s+g +fe   +++q  +++  n  G   +++ ++   i +     i+++ss++gl+a p+++ y a++h l g+ +++  el 
  MMETSP1061-20121228|8050_1 654 LVTGANAPLASETARQFAAGGANLILVSH---------SSGSSEDDMELLVEECQELGSsKVRSYSADLSNAVSAELVLREAAKEFEdTFDVVILNGENESHGCLFEeiADANQIGKMVKDNTIGCIIALHYAMK-YIPKTPESRIVVLSSTSGLVASPYKSVYGATQHALKGFCDSVRMELN 826
                 66777666666677777777777664422.........23468899**********9963888999********************6369****************8433678899*********9999888765.456666778******************************99999986 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   2.1e-08   9.6e-06       2     169 ..     649     824 ..     648     830 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.1e-08
   TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlna....eaaekvaaairekgg.kaeavavditdrasvdaava.aaeealgpvdvlvnnagwdvlkpflk..tekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlare 169
                 ++k ++vtg    + + + r+fa  ga++ ++  +     +  e + ++ +e g  k ++ ++d+++  s ++ +  aa+e     dv++ n   +  + + +  ++ ++  +++  n  g++   h  +k + +  + riv ++s ++ v s  ++vy a +  l  f  ++  e
  MMETSP1061-20121228|8050_1 649 RHKSVLVTGANAPLASETARQFAAGGANLILVSHSSgsseDDMELLVEECQELGSsKVRSYSADLSNAVSAELVLReAAKEFEDTFDVVILNGENESHGCLFEeiADANQIGKMVKDNTIGCIIALHYAMKYIPKTPESRIVVLSSTSGLVASPYKSVYGATQHALKGFCDSVRME 824
                 5799************************999887651111455667788888885368999***********99972455556678**99999888887755423688999***********99999999**********************************999998887666 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   2.5e-08   1.1e-05     413     573 ..     649     814 ..     638     829 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 2.5e-08
   TIGR02632 413 arrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelv...dkfGadkavalkldvtdeeavkaafaevalayG.GvdivvnnaGiavskpleete..leeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaae 573
                  ++ +lvtG+ + + +e+ar++++ Ga ++l+   + + e+  + lv   ++ G+ k+++  +d+ +  + + +++e+a ++    d+v+ n    +   l e +  +++  + ++ ++ G  +  + a++ +  +   + +v ++s  ++va++  + y a++ a 
  MMETSP1061-20121228|8050_1 649 RHKSVLVTGANAPLASETARQFAAGGANLILVSHSSGSSEDDMELLVeecQELGSSKVRSYSADLSNAVSAELVLREAAKEFEdTFDVVILNGENESHGCLFEEIadANQIGKMVKDNTIGCIIALHYAMKYIP-KTPESRIVVLSSTSGLVASPYKSVYGATQHAL 814
                 45789**************************9998877776666554111579*****************************7257888888666555555454413445555555567777666666666655.566789*******************9998665 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   9.4e-08   4.3e-05       3     171 ..     653     814 ..     651     830 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 9.4e-08
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeie...aevsalsvdlvsldleaakdvedllkaleesikk.eeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaR 171
                 +lvtGa   +  e a+++a      g  l+L++ +  +  +  + ++    e  + +v  +s+dl++a   e++l+   e +k+ e+   ++++ n G     +  ++e++D++++ k  + n++  ++     +k +++  + e  +v lss + + + +  + Y a++ a 
  MMETSP1061-20121228|8050_1 653 VLVTGANAPLASETARQFAA----GGANLILVSHSSGSSEDDMELLVeecQELGSSKVRSYSADLSNAVSAELVLR---EAAKEfEDTFDVVIL-N-GENESHGCLFEEIADANQIGKMVKDNTIGCIIALHYAMKYIPK--TPESRIVVLSSTSGLVASPYKSVYGATQHAL 814
                 68999999888888888887....555555555444443333333332223466789************8887765...443330333333333.3.666777889999******************************4..5566677788888888888888888776655 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.3e-07   5.9e-05       1     169 [.     653     827 ..     653     856 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.3e-07
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdra...daeesvaairaqgg.narllkfdvadrvavrevleadiaehgayygvvlnagiard..aafpalseed.wdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelak 169
                 vlvtga   +    a ++aa g ++ +  +s+ +   d e  v++ +  g+ ++r  + d+++ v++  vl +  +e    + vv+  g +      f  +++++    +++ n  g    +h   m  i      ri+ l+s sg++    +  y a++  l g   ++ +el +
  MMETSP1061-20121228|8050_1 653 VLVTGANAPLASETARQFAAGGANLILVSHSSGSsedDMELLVEECQELGSsKVRSYSADLSNAVSAELVLREAAKEFEDTFDVVILNGENEShgCLFEEIADANqIGKMVKDNTIGCIIALH-YAMKYIPKTPESRIVVLSSTSGLVASPYKSVYGATQHALKGFCDSVRMELND 827
                 8***********************99988876651113445688999998626899999************9999999988999888887755115678887765145666666666665555.56888999999******************************99999999864 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.4e-07   0.00038       4     170 ..     649     824 ..     646     830 .. 0.65

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 8.4e-07
   TIGR01832   4 eGkvalvtGantGlGqgiavglaeaGadivgvgisels.e.....tqekvealGr.kflslkadladeeaakalvdeaveeag.kidilvnnaGi.irredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllane 170
                 + k +lvtGan+ l    a  +a+ Ga+++ v+ s+ s e       e+ ++lG  k+ s +adl++  +a+ ++ ea++e++  +d+++ n     +    +e+++++    +  +     +++ + a k + +  +++i+ ++s   +      + y a+++a+ G+  ++  e
  MMETSP1061-20121228|8050_1 649 RHKSVLVTGANAPLASETARQFAAGGANLILVSHSSGSsEddmelLVEECQELGSsKVRSYSADLSNAVSAELVLREAAKEFEdTFDVVILNGENeSHGCLFEEIADANQIGKMVKDNTIGCIIALHYAMKYIPKTPESRIVVLSSTSGLVASPYKSVYGATQHALKGFCDSVRME 824
                 56899************************9998654321211111345556677537899****************9999998689999877543022233344444443333322222223455566667777777777777766666666666666777777777776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       364  (0.0887372); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.48
# Mc/sec: 2628.78
//
Query:       MMETSP1061-20121228|8053_1  [L=1098]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1098 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.42
# Mc/sec: 3450.57
//
Query:       MMETSP1061-20121228|8060_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.18
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|8061_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 653.00
//
Query:       MMETSP1061-20121228|8062_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.27
# Mc/sec: 464.41
//
Query:       MMETSP1061-20121228|8063_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.38
# Mc/sec: 1017.71
//
Query:       MMETSP1061-20121228|8064_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|8058_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    7.8   3.6       0.24    7.6   2.5    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   2.5   5.7e-05      0.24     333     377 ..       8      51 ..       2     105 .. 0.55

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 5.7e-05
   TIGR02442 333 akpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeea 377
                 ++pd+ +++e+ e+e+e+++++++++p  +d+k++++++++  ++
  MMETSP1061-20121228|8058_1   8 DQPDNASKNEN-ENENEKKNHNQNTNPTPKDNKKKNNNKNNFVNN 51 
                 22333333332.333333333333444444443333333322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1131.34
//
Query:       MMETSP1061-20121228|8057_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2726.26
//
Query:       MMETSP1061-20121228|8055_1  [L=1291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-37  121.6   2.7    2.2e-05   22.2   0.0   14.2 15  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0     0.031   1.3e+02      19      33 ..     330     344 ..     328     346 .. 0.85
   2 !    8.3   0.0   0.00014      0.59      16      34 ..     452     470 ..     452     471 .. 0.90
   3 !   22.2   0.0   5.3e-09   2.2e-05       2      34 ..     515     547 ..     514     548 .. 0.96
   4 !    8.4   0.0   0.00013      0.55       2      28 ..     619     645 ..     618     649 .. 0.89
   5 ?   -0.2   0.0     0.073     3e+02      12      27 ..     669     684 ..     665     687 .. 0.81
   6 !   11.3   0.0   1.6e-05     0.065      12      34 ..     747     769 ..     746     770 .. 0.92
   7 !    4.8   0.0    0.0019       7.8       2      33 ..     772     803 ..     771     805 .. 0.91
   8 !    4.3   0.0    0.0026        11       3      25 ..     854     876 ..     852     877 .. 0.85
   9 ?   -2.0   0.0      0.28   1.1e+03      10      23 ..     934     947 ..     931     949 .. 0.86
  10 !   15.4   0.0   8.1e-07    0.0033       2      34 ..     968    1001 ..     967    1002 .. 0.91
  11 ?   -2.4   0.0      0.35   1.4e+03       2      20 ..    1004    1022 ..    1003    1023 .. 0.87
  12 !    4.8   0.0    0.0018       7.4      16      35 .]    1050    1069 ..    1047    1069 .. 0.89
  13 ?    2.4   0.0     0.011        45       2      25 ..    1071    1094 ..    1070    1099 .. 0.84
  14 !   17.7   0.0   1.5e-07   0.00062       1      35 []    1113    1147 ..    1113    1147 .. 0.96
  15 ?    1.4   0.0     0.023        94       1      31 [.    1148    1178 ..    1148    1181 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.031
   TIGR00756  19 AlelfdeMkergivP 33 
                 +le++d+M ++g+  
  MMETSP1061-20121228|8055_1 330 VLEVLDRMDRNGVPA 344
                 789*********975 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00014
   TIGR00756  16 veeAlelfdeMkergivPd 34 
                 +  A++++++M+++gi+P+
  MMETSP1061-20121228|8055_1 452 WQTAISVMQQMQRKGIRPT 470
                 5689**************8 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 5.3e-09
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 ++ +++++++  g++  Al++++eM+++++ P+
  MMETSP1061-20121228|8055_1 515 IWGAVLNACAVVGDYGQALKFMNEMMAEKCTPN 547
                 699*****************************9 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 0.00013
   TIGR00756   2 tyntlisglckagrveeAlelfdeMke 28 
                 + nt++s  +kag++ +A+ lf+++++
  MMETSP1061-20121228|8055_1 619 ALNTILSIVVKAGNLGDARVLFNRIQR 645
                 579********************9987 PP

  == domain 5    score: -0.2 bits;  conditional E-value: 0.073
   TIGR00756  12 kagrveeAlelfdeMk 27 
                  + + e A+++ +eM+
  MMETSP1061-20121228|8055_1 669 GSSDSETAKRIVKEMR 684
                 5678899********8 PP

  == domain 6    score: 11.3 bits;  conditional E-value: 1.6e-05
   TIGR00756  12 kagrveeAlelfdeMkergivPd 34 
                 + g+++ +lel++eM++ g++ +
  MMETSP1061-20121228|8055_1 747 RCGDLSRCLELYEEMESTGCRAN 769
                 679*****************987 PP

  == domain 7    score: 4.8 bits;  conditional E-value: 0.0019
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivP 33 
                 + n ++ +lc +g    A+  f+ Mk+rg+  
  MMETSP1061-20121228|8055_1 772 VLNGVLTALCDRGAHASAMNAFHIMKDRGFIL 803
                 6799*************************965 PP

  == domain 8    score: 4.3 bits;  conditional E-value: 0.0026
   TIGR00756   3 yntlisglckagrveeAlelfde 25 
                 + +li  ++ +g++++Al+++++
  MMETSP1061-20121228|8055_1 854 FEALILIHASRGDIDKALSVMNQ 876
                 5678888999**********997 PP

  == domain 9    score: -2.0 bits;  conditional E-value: 0.28
   TIGR00756  10 lckagrveeAlelf 23 
                 +++a+++ e+l+l+
  MMETSP1061-20121228|8055_1 934 CSRANEFVEGLSLL 947
                 99*********997 PP

  == domain 10    score: 15.4 bits;  conditional E-value: 8.1e-07
   TIGR00756    2 tyntlisglckagrveeAlelfdeMker.givPd 34  
                  + n+li ++++ gr++  l l++e+ +r g++Pd
  MMETSP1061-20121228|8055_1  968 ALNALIAACGRCGRPDLSLVLLNEISSRyGLRPD 1001
                  579**********************7777****9 PP

  == domain 11    score: -2.4 bits;  conditional E-value: 0.35
   TIGR00756    2 tyntlisglckagrveeAl 20  
                  +y + + ++ ka +ve A 
  MMETSP1061-20121228|8055_1 1004 SYRSAMIACNKAQHVESAY 1022
                  7999999********9986 PP

  == domain 12    score: 4.8 bits;  conditional E-value: 0.0018
   TIGR00756   16 veeAlelfdeMkergivPda 35  
                  +e  l l+++M e g++Pd+
  MMETSP1061-20121228|8055_1 1050 WECSLALYRRMTEGGLKPDV 1069
                  677899************96 PP

  == domain 13    score: 2.4 bits;  conditional E-value: 0.011
   TIGR00756    2 tyntlisglckagrveeAlelfde 25  
                  t++++is++  ag++  Al ++++
  MMETSP1061-20121228|8055_1 1071 THSSIISSCEAAGEWQRALWVLQK 1094
                  899*************99866665 PP

  == domain 14    score: 17.7 bits;  conditional E-value: 1.5e-07
   TIGR00756    1 vtyntlisglckagrveeAlelfdeMkergivPda 35  
                  +++n+ +s++ k g + eAl+l+++M+e+ ++P++
  MMETSP1061-20121228|8055_1 1113 YCWNAALSACEKGGAWVEALDLYERMLESPFRPNV 1147
                  69******************************996 PP

  == domain 15    score: 1.4 bits;  conditional E-value: 0.023
   TIGR00756    1 vtyntlisglckagrveeAlelfdeMkergi 31  
                  vt n+l+ +l kag+ e A +++de +e gi
  MMETSP1061-20121228|8055_1 1148 VTVNSLMEALDKAGQKELAQSIYDEALELGI 1178
                  699*********************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.56u 0.14s 00:00:00.70 Elapsed: 00:00:00.66
# Mc/sec: 2581.79
//
Query:       MMETSP1061-20121228|8071_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 653.35
//
Query:       MMETSP1061-20121228|8069_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-15   54.3   7.1    3.9e-15   53.3   4.9    1.5  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    3.9e-06   22.8   6.6    8.4e-06   21.7   4.6    1.5  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0046   14.5   2.0     0.0094   13.5   1.4    1.5  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0056   14.5  10.8     0.0098   13.7   7.5    1.4  1  TIGR02338 gimC_beta: prefoldin, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   4.9   3.8e-18   3.9e-15     125     338 ..       5     244 ..       2     262 .. 0.70

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 3.8e-18
   TIGR00990 125 kyaaklkekGnkayrnkdfdkaielyskalllked.Pvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqave..rllkkfaeskakeil..............etkpeklPsvtf..vanylqsfraklrpagledsa...eldeelgkGllqlglksleskadesyeeaarafekaldlg.......elkekealalelrG 338
                 k a + k +Gn+a+ +kdf+ ai+lyska+l  ++  +++snr+a +    +++  ++d+ + ++l+p+++k   r a+a+ +   y da    t   l  d + +q a+ +   rl kk a s a   l                   +l ++t+  + +    +    r  +  + +     +ee + G +    k+  s  +e +    ++f ++ +++       ++++++    el+G
  MMETSP1061-20121228|8069_1   5 KTAEEYKALGNEAFSKKDFQTAIDLYSKAILQEPNnHIFFSNRSASHAGQLEWDAAIADAKECIRLNPQFIKGYYRLATAQLESKDY-DAAEATTKQGLGIDANHAQLAKLLKsvRLHKKAAASSASSSLggaagassaaaaggV--TRQLDTATMreLHDLQVQYGNTAREYNTVQANrmrAEKEEKMYGITLNEVKETPSVSGEYFRSVGKLFLRQSQKEihehlekNIRNQKKQQQELTG 244
                 567889*************************9986279*****************************************98776666.666778999999999*******99755899999999999988888888888887552..233333333112222222222222222222220002345667777777777777777777777777777776665554444444444444445555 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   4.6   8.2e-09   8.4e-06     367     482 ..      11     126 ..       2     144 .. 0.76

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 8.2e-09
   TIGR02917 367 sllGeayLekgdfekAaeylakaseldPenaaaktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdla 482
                 + lG ++  k+df+ A+ +  ka  ++P+n +   +   s+ +q +   aiad ++ ++l+p+ ++    L+ + L+s++ d a a+ k+ +    + a+l +ll ++ l kk +a
  MMETSP1061-20121228|8069_1  11 KALGNEAFSKKDFQTAIDLYSKAILQEPNNHIFFSNRSASHAGQLEWDAAIADAKECIRLNPQFIKGYYRLATAQLESKDYDAAEATTKQGLGIDANHAQLAKLLKSVRLHKKAAA 126
                 56788888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888887777776654 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.4   9.2e-06    0.0094      20     131 ..       9     120 ..       2     125 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 9.2e-06
   TIGR02552  20 aiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraea 131
                 +  al+ ++++++++++A  l++  ++ +p+++ ++   +a++  + e++ Aia  + +  l+++  + +y++a   l+ +++  A+++ k  + i+++ ++ ++l + ++ 
  MMETSP1061-20121228|8069_1   9 EYKALGNEAFSKKDFQTAIDLYSKAILQEPNNHIFFSNRSASHAGQLEWDAAIADAKECIRLNPQFIKGYYRLATAQLESKDYDAAEATTKQGLGIDANHAQLAKLLKSVRL 120
                 555778899*********************************************************************************9999999999999888777665 PP

>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   7.5   9.5e-06    0.0098      12     109 ..     167     265 ..     155     266 .] 0.84

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 9.5e-06
   TIGR02338  12 lqqlqqqlqavltqkqqveaelkevekaLeelekled.dtkvYksvGnllvktdkeevleeLeekketlelrvktlekQeerlrekleelqekiqealk 109
                   +   + ++v +++ ++e+e k    +L+e+++ +  + + ++svG+l ++++++e++e Le      + + + l+   e l+++l++ q +i+e+ +
  MMETSP1061-20121228|8069_1 167 YGNTAREYNTVQANRMRAEKEEKMYGITLNEVKETPSvSGEYFRSVGKLFLRQSQKEIHEHLEKNIRNQKKQQQELTGKSEYLQKRLKSQQLNIKELTQ 265
                 4455566778888889999999999999999999987367899*********************999999999999999999******99999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       380  (0.0926377); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1210.66
//
Query:       MMETSP1061-20121228|8070_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2498.99
//
Query:       MMETSP1061-20121228|8066_1  [L=1304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-32  108.6   0.0    9.7e-32  108.0   0.0    1.1  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    6.9e-30  101.3   0.0      1e-29  100.7   0.0    1.1  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA


Domain annotation for each model (and alignments):
>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   4.8e-35   9.7e-32     199     445 ..      95     349 ..      79     361 .. 0.84

  Alignments for each domain:
  == domain 1    score: 108.0 bits;  conditional E-value: 4.8e-35
   TIGR01970 199 araveealaeesgsvLvfLPGqaeirrveeaLaerldasev..elcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeqaerla.aaaepeilqadLaglalelarW...GakpsdlrfldaPPaaalaaakeLLqrlgal...daegkltahGkalaeLgvePrlaalllsakseeeaalaaelaalLeer 445
                 a +++ ++ e  gsvL+f+PG aei  ++e ++  ++++ +  +  P++G++++e+q +a  ++++   k+++atn ae+s+t++ v  vi  gl r+  ++ +s    L    isqasa+qraGr Gr+ pG  +rL+++   e+   +++  e+++  L +++l l +     +kp  +  l+ P   ++ ++ + L + + +   d e+++t  G  + +Lgv+  l  ++  + + + aa+a+e+aa++  +
  MMETSP1061-20121228|8066_1  95 AACLATIVGEPGGSVLIFVPGMAEIIAISECIE-GFHTPGIryTCFPIHGDIPFEEQMEAFLAPSEDELKIIIATNAAESSVTLPNVDHVICLGLCRQIVYNKASHRQMLTPAWISQASATQRAGRTGRVRPGNVYRLYTRRAYENCMeEFEPGEMVRIPLDSVILMLKQIlheEVKPVFMDCLEPPSLDTIDRSFQSLYHWNFItepDDEADITSLGSFVSSLGVDLSLGSFIGLGIQFGVAAEAIEMAAMMSLP 349
                 4566777788899*****************998.555566611578*********************************************************************************************998887765055666*****99988776665511156677777777666666667777776655542226788***************************************99766 PP

>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.7   0.0   4.9e-33     1e-29     263     515 ..      89     348 ..      71     353 .. 0.90

  Alignments for each domain:
  == domain 1    score: 100.7 bits;  conditional E-value: 4.9e-33
   TIGR01967 263 dqleallaavdelveeekGdiliflpGereirdaaealrkrklrhve..ilPlyarlsaeeqqrvfqphs..grrivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcGrvaeGicirlyseedfnsr.PeftdPeilrtnlasvilqmlalrlGdiaa..fPfieaPdkrairdGlrlleeldalkedeaeikltpiGrqlaqlPvdPrlarmlleaerlgclqevliiasalsi 515
                 ++  +l a++  +v e  G +lif+pG  ei    e ++  ++ ++     P+++ +  eeq   f + s  + +i++atn ae s+t+P +  vi  G+ r   y   ++ q l    isqasa qr Gr Grv +G + rly    +++   ef   e++r  l svil ++++   +++   +  +e+P   +i   ++ l   + ++e ++e ++t +G  ++ l vd  l+  +  + ++g   e++ +a+ +s+
  MMETSP1061-20121228|8066_1  89 KNRIGLAACLATIVGEPGGSVLIFVPGMAEIIAISECIEGFHTPGIRytCFPIHGDIPFEEQMEAFLAPSedELKIIIATNAAESSVTLPNVDHVICLGLCRQIVYNKASHRQMLTPAWISQASATQRAGRTGRVRPGNVYRLYTRRAYENCmEEFEPGEMVRIPLDSVILMLKQILHEEVKPvfMDCLEPPSLDTIDRSFQSLYHWNFITEPDDEADITSLGSFVSSLGVDLSLGSFIGLGIQFGVAAEAIEMAAMMSL 348
                 555577888888999999**********************99988752268**************9765511579**************************************************************************9862568888**************99988877642145689************************************************************9999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.63u 0.15s 00:00:00.78 Elapsed: 00:00:00.38
# Mc/sec: 4529.31
//
Query:       MMETSP1061-20121228|8076_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.42    8.8   6.4       0.27    9.4   1.7    2.2  2  TIGR03685 L21P_arch: 50S ribosomal protein L12P
       0.46    5.8  12.7       0.62    5.4   8.8    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.7   0.00013      0.27      74      93 ..      38      56 ..       2      67 .. 0.58
   2 ?    1.6   0.1     0.037        75      70      93 ..      92     115 ..      70     118 .] 0.49

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00013
   TIGR03685 74 aaeeekeeeeeeeeekeeee 93
                ++e+ek+e+ eeeee+e+  
  MMETSP1061-20121228|8076_1 38 EDENEKDED-EEEEEDENLG 56
                222222222.2222222222 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.037
   TIGR03685  70 aaaeaaeeekeeeeeeeeekeeee 93 
                  + + +++++e e e++ +k+ +e
  MMETSP1061-20121228|8076_1  92 GSPRVDDKDSESEWENDGDKDFQE 115
                 222222222222224444444444 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   8.8    0.0003      0.62     980    1010 ..      36      66 ..      15      76 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0003
   TIGR00927  980 eeeeeeeeeeeeeeeeeeeeeeeneeplsle 1010
                  e+e+e+e++e+eeeee+e+  ee+e  l le
  MMETSP1061-20121228|8076_1   36 EDEDENEKDEDEEEEEDENLGEEHEAALPLE 66  
                  4444444444444444444444444555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 741.65
//
Query:       MMETSP1061-20121228|8072_1  [L=1626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.2    3.2  10.6        8.4    2.5   7.4    1.3  1  TIGR01399 hrcV: type III secretion protein, HrcV family


Domain annotation for each model (and alignments):
>> TIGR01399  hrcV: type III secretion protein, HrcV family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   7.4    0.0021       8.4     398     516 ..     647     763 ..     513     813 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.0021
   TIGR01399 398 eefeilleevpvlkatlkadkvlleeseaeleleaiqaesekkakgesqvvwveeeeaeklekaglevvsksevialrlkavlarnaeefiGiqEtralldqlekeypeLvkEvqrvlp 516
                 ++ + ll++ ++++++ ++++   ++++++ +++++   +++  ++  q   ve ++a    ++  + +++ e+ + ++ ++l+ +++e  Gi+E+   ++ l ++ p+L+kE +  lp
  MMETSP1061-20121228|8072_1 647 QQQQQLLQQQQLQQQQQQQQQQQQQQQQQQQQQQQML--QQQPPQPPMQHQAVEFDHAISYVTQIKRRFANDERTYRQFLEILHTYQKEQRGIKEVLEQVAHLFQDHPDLLKEFTFFLP 763
                 2222233333333333222222222222222222111..12222233333333333333333333333444478888889999******************************987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1626 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       754  (0.183813); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        58  (0.0141394); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 1.18u 0.16s 00:00:01.34 Elapsed: 00:00:00.69
# Mc/sec: 3110.35
//
Query:       MMETSP1061-20121228|8074_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.18
# Mc/sec: 1334.56
//
Query:       MMETSP1061-20121228|8078_1  [L=952]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (952 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.54
# Mc/sec: 2326.92
//
Query:       MMETSP1061-20121228|8081_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-07   29.5   6.4    1.2e-07   29.3   0.8    2.4  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.4e-05   20.2   0.8    5.6e-05   19.5   0.6    1.3  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
      0.026   13.0   5.1        4.1    5.9   0.0    4.0  4  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.2     0.014        19     118     171 ..      39      93 ..      16     102 .. 0.74
   2 !   29.3   0.8     9e-11   1.2e-07      15      54 ..     607     647 ..     595     650 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.014
   TIGR02349 118 dlevelelsleeavkGvekeiele.rkekCetCkGsGakkgsklktCktCgGtGq 171
                   ++e++l+   a  Gv+kei+ + +k++Ce+   +G  kg+   + ++C G+ +
  MMETSP1061-20121228|8081_1  39 VASMEINLNPVTANGGVDKEIDENgEKTSCEEWAAEGECKGNPSYMLQNCAGSCN 93 
                 334556666667888******87626779*************99999***99865 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 9e-11
   TIGR02349  15 eeikkAYrklakkyHPDrnkg.ekeaeekfkeineAyevLs 54 
                 + +kk ++ l++k+HPD+ kg +k a  kfke++eA+e++s
  MMETSP1061-20121228|8081_1 607 AWLKKQFKVLVRKFHPDKYKGnKKRAARKFKEVKEAKEIIS 647
                 558999**************9667899************98 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.6   4.1e-08   5.6e-05       2      56 ..     585     648 ..     584     650 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.1e-08
   TIGR03835   2 rDyyevLgidrDade..qei.....kkafrkLakkyhPDrnka..adaakifaeineandvLsn 56 
                 rD+  +L++  D +e  +ei     kk f+ L +k+hPD+ k     aa+ f+e+ ea++++s 
  MMETSP1061-20121228|8081_1 585 RDHAKILQLPIDLEErsKEIkcawlKKQFKVLVRKFHPDKYKGnkKRAARKFKEVKEAKEIISK 648
                 8999999998888873357722222577999********99875578**************995 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.003       4.1      62     104 ..     318     360 ..     304     366 .. 0.88
   2 ?    1.3   0.1     0.079   1.1e+02      47      75 ..     383     411 ..     376     443 .. 0.69
   3 ?    5.2   0.0     0.005       6.8      39      86 ..     505     552 ..     500     560 .. 0.72
   4 ?   -3.0   0.1       1.7   2.3e+03      53      68 ..     627     642 ..     625     649 .. 0.66

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.003
   TIGR02795  62 flevvkkypksekapdallklgeslqelgqkekAkktlqevik 104
                  l+++kk   s+k+ d ll  +++ + lg++++A kt  ++i+
  MMETSP1061-20121228|8081_1 318 VLQLTKKIRPSDKSTDVLLIEARCHEMLGDHKNALKTAGRLIQ 360
                 5678999999*************************99888776 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.079
   TIGR02795  47 ealyakkkykdAakaflevvkkypkseka 75 
                 +a ++ +  ++A   +++v+k +p++ek+
  MMETSP1061-20121228|8081_1 383 NAAMQLGLSDNALSFYQTVLKFDPEQEKT 411
                 44555555556666666666666655554 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.005
   TIGR02795  39 pnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgesl 86 
                  +A+  +Geal+   +y++A + f+ ++   p++e   +   +l + l
  MMETSP1061-20121228|8081_1 505 KEAYLVRGEALLLDMDYDEAVQDFRMAFDLVPEDEEHMEEKHELNQKL 552
                 578888899999999999999999988888887776665555555555 PP

  == domain 4    score: -3.0 bits;  conditional E-value: 1.7
   TIGR02795  53 kkykdAakaflevvkk 68 
                 ++ k+Aa++f+ev ++
  MMETSP1061-20121228|8081_1 627 GNKKRAARKFKEVKEA 642
                 5667777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.30
# Mc/sec: 2868.56
//
Query:       MMETSP1061-20121228|8084_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|8083_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 639.11
//
Query:       MMETSP1061-20121228|8086_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 446.25
//
Query:       MMETSP1061-20121228|8088_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.09s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 766.79
//
Query:       MMETSP1061-20121228|8087_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.38
# Mc/sec: 1809.64
//
Query:       MMETSP1061-20121228|8089_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 939.76
//
Query:       MMETSP1061-20121228|8090_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 587.35
//
Query:       MMETSP1061-20121228|8094_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 584.52
//
Query:       MMETSP1061-20121228|8091_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.21
# Mc/sec: 2256.39
//
Query:       MMETSP1061-20121228|8095_1  [L=873]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-16   57.7   8.4    0.00012   19.5   0.2    6.2  6  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    3.1e-12   43.0   5.3     0.0016   14.2   0.0    5.5  6  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.5e-12   44.1   8.5    0.00021   18.8   0.0    7.8  8  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    2.8e-09   35.5   1.3       0.71    8.3   0.0    6.5  7  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   7.8e-05      0.08      31      67 ..     130     166 ..     124     171 .. 0.83
   2 ?    0.4   0.0     0.084        86     137     164 ..     310     337 ..     281     391 .. 0.81
   3 !    8.6   0.0   0.00026      0.27      99     164 ..     436     506 ..     398     510 .. 0.80
   4 !   16.5   0.2     1e-06     0.001      72     178 ..     526     646 ..     521     678 .. 0.66
   5 ?   -0.9   0.0       0.2   2.1e+02     134     171 ..     685     722 ..     680     732 .. 0.82
   6 !   19.5   0.2   1.2e-07   0.00012      71     166 ..     734     843 ..     728     853 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 7.8e-05
   TIGR02521  31 akirvqLaleYleqgdlekAkenlekAleldpkdada 67 
                 a+i  ++a+ Y+e++++e+A+++l  Al l  k+++a
  MMETSP1061-20121228|8095_1 130 ASILNNKAVIYMERHQYEEARRSLHRALRLVEKENKA 166
                 5666689999******************987776665 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.084
   TIGR02521 137 syeNaglcalkagdtekaekyltralki 164
                 ++ N+g +a ++g+ e a   ++r+l +
  MMETSP1061-20121228|8095_1 310 VLFNLGRVAHDQGNLEDALGLFKRSLLA 337
                 5679999999999999999999998754 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00026
   TIGR02521  99 gdvlNNYGtFLcqqkkyeeAeqqfeaAiedpk.....YeqparsyeNaglcalkagdtekaekyltralki 164
                 g+  NN G+  +q +ky+ A + + +A++            a+++ N g ++ + ++++ka + +++ lk+
  MMETSP1061-20121228|8095_1 436 GTGWNNIGRMYFQLGKYDLALEAYLEALRIRRkcqgdSVDVAATLFNCGQVYHNMERRDKAISLFQEFLKL 506
                 5567***********************98554211125678999**********************99886 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 1e-06
   TIGR02521  72 AlyyqqlgelekAeesfrkAltlkp........nngdvlNNYGtFLcqqkkyeeAeqqf......eaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelael 178
                 + ++ + +e ekA +sf+ Al++ +        + +  lN  G   +++++ ++A + +      e A+ +p+ ++ + +y+N++ + +++g+  ka +y ++  +i+ ++     e+a++
  MMETSP1061-20121228|8095_1 526 GQILHENKEYEKALKSFQYALRIGNialgpvhsEIAITLNKMGNVYYETGDLDSALKVYhqgldiELAVLEPANPNIYVTYTNIAEIHKQKGEYGKAIEYYQKVYEIQISQGAPSSEIANT 646
                 5566677788888888888887643222222214455678888888888888888876522222256888888888888889999888888888898888888888887777766666654 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.2
   TIGR02521 134 parsyeNaglcalkagdtekaekyltralkidpkrpes 171
                  a +++  +l++lk++++  a +++ +a +i+++ p+ 
  MMETSP1061-20121228|8095_1 685 VAVTLTHTALVLLKLERHGIALQAFAEAYRIRKSLPDP 722
                 56688889999999**************9999988765 PP

  == domain 6    score: 19.5 bits;  conditional E-value: 1.2e-07
   TIGR02521  71 lAlyyqqlgelekAeesfrkAltlkpnngdvlN........NYGtFLcqqkkyeeAeqqfeaAiedpk..Y....eqparsyeNaglcalkagdtekaekyltralkidp 166
                 +Al+y +lg +e+A + +    ++++n   + N        N G   +q+++++ A ++f++A+e +   Y    ++ ar+++ +g + +++g+ + + +  ++al+i +
  MMETSP1061-20121228|8095_1 734 IALIYHHLGSHEQALKFYLATAEIEKNGLGIANrdlsityyNIGQIFYQRGDMKRALAKFNEALEIERecYgakhPTCARTLNEIGNIEMQLGNLDAMMECYSKALRIYK 843
                 79****************9999999999988888888888899********************9865444622225779***************************9865 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00016      0.17     456     501 ..     121     166 ..     115     194 .. 0.83
   2 ?   -3.8   0.0      0.42   4.3e+02     503     527 ..     312     336 ..     309     354 .. 0.68
   3 !    3.0   0.0    0.0038       3.9     465     529 ..     436     507 ..     357     514 .. 0.74
   4 !    3.5   0.0    0.0027       2.8     470     494 ..     524     548 ..     516     553 .. 0.88
   5 !   12.4   0.0   5.4e-06    0.0056     465     529 ..     561     633 ..     557     676 .. 0.79
   6 !   14.2   0.0   1.6e-06    0.0016     463     530 ..     768     843 ..     730     848 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00016
   TIGR02917 456 klekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpA 501
                 k+ +  p  as+ n ++ iy+ + ++++Ar ++  AL +   + +A
  MMETSP1061-20121228|8095_1 121 KWFTPRPVIASILNNKAVIYMERHQYEEARRSLHRALRLVEKENKA 166
                 677777888999*************************987776666 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.42
   TIGR02917 503 anLArldlqekniddAkqrfekvla 527
                 +nL r++ +++n++dA   f++ l 
  MMETSP1061-20121228|8095_1 312 FNLGRVAHDQGNLEDALGLFKRSLL 336
                 6777777777777777666666544 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.0038
   TIGR02917 465 aslynllgaiylgkkdlakAreafekALkiep.......dffpAlanLArldlqekniddAkqrfekvlaid 529
                    +n +g  y++ ++++ A ea+ +AL i +       d ++ l+n  ++  + ++ d+A+  f++ l+ +
  MMETSP1061-20121228|8095_1 436 GTGWNNIGRMYFQLGKYDLALEAYLEALRIRRkcqgdsvDVAATLFNCGQVYHNMERRDKAISLFQEFLKLA 507
                 566777888888888888888888888877652222222334455666666777777777777777776655 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.0027
   TIGR02917 470 llgaiylgkkdlakAreafekALki 494
                  +g+i+  +k+++kA ++f+ AL i
  MMETSP1061-20121228|8095_1 524 CIGQILHENKEYEKALKSFQYALRI 548
                 6899******************998 PP

  == domain 5    score: 12.4 bits;  conditional E-value: 5.4e-06
   TIGR02917 465 aslynllgaiylgkkdlakAreafekALkie........pdffpAlanLArldlqekniddAkqrfekvlaid 529
                 a + n +g +y   +dl+ A + + + L ie        p+ +   +n A+++ q+++  +A+++++kv  i+
  MMETSP1061-20121228|8095_1 561 AITLNKMGNVYYETGDLDSALKVYHQGLDIElavlepanPNIYVTYTNIAEIHKQKGEYGKAIEYYQKVYEIQ 633
                 5678999*********************9954444433377788999********************997776 PP

  == domain 6    score: 14.2 bits;  conditional E-value: 1.6e-06
   TIGR02917 463 dnaslynllgaiylgkkdlakAreafekALkiepdffpAla........nLArldlqekniddAkqrfekvlaidp 530
                 d   +y  +g+i  +++d ++A ++f++AL+ie++ + A +        +  ++++q +n+d+  + ++k+l+i++
  MMETSP1061-20121228|8095_1 768 DLSITYYNIGQIFYQRGDMKRALAKFNEALEIERECYGAKHptcartlnEIGNIEMQLGNLDAMMECYSKALRIYK 843
                 55668999**************************998875432222222667899999999999999999999886 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.044        45      92     123 ..     136     167 ..     119     175 .. 0.80
   2 ?    1.1   0.0     0.062        63      29      82 ..     319     380 ..     309     420 .. 0.61
   3 !    5.9   0.0    0.0021       2.1      58     117 ..     442     508 ..     438     516 .. 0.72
   4 !    4.7   0.0    0.0048       4.9      58     101 ..     525     569 ..     521     586 .. 0.68
   5 !   18.8   0.0   2.1e-07   0.00021      24     118 ..     567     669 ..     554     691 .. 0.81
   6 ?    1.4   0.0     0.051        52      90     118 ..     690     718 ..     677     728 .. 0.72
   7 !    7.3   0.0   0.00074      0.76      56     118 ..     732     802 ..     727     808 .. 0.81
   8 ?   -1.9   0.0      0.53   5.4e+02      57      80 ..     824     847 ..     820     852 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.044
   TIGR02552  92 aaecllalgekeeAlkaLklaieiaeekeeys 123
                  a+ +++ +++eeA++ L +a+++ e++++  
  MMETSP1061-20121228|8095_1 136 KAVIYMERHQYEEARRSLHRALRLVEKENKAG 167
                 56778888999999999999999888766555 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.062
   TIGR02552  29 yqqgkyeeAeklF..qlLaaldpteakywl......gLaaclqalkeyeeAiaaYalaaald 82 
                   qg++e+A+ lF  +lLa+ +    + +l      g++    +++ + + +++Y  a+al 
  MMETSP1061-20121228|8095_1 319 HDQGNLEDALGLFkrSLLAIKNCSARDEALtlavlvGIGKIQYMKGGHVDSLNTYMTALALA 380
                 46777777777773335666655544444300111144455566666666666666666665 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.0021
   TIGR02552  58 LaaclqalkeyeeAiaaYalaaaldl.......ddprpvyhaaecllalgekeeAlkaLklaieiae 117
                 ++  + +l++y+ A++aY  a+ +++       d ++ ++  ++++ +++++ +A + ++  +++a+
  MMETSP1061-20121228|8095_1 442 IGRMYFQLGKYDLALEAYLEALRIRRkcqgdsvDVAATLFNCGQVYHNMERRDKAISLFQEFLKLAK 508
                 6667778889999999999888887511111114567788888889999999999888888777765 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.0048
   TIGR02552  58 LaaclqalkeyeeAiaaYalaaald.lddprpvyhaaecllalge 101
                 ++  l++ keye+A++ +++a+ +  +    ++ ++a+ l ++g+
  MMETSP1061-20121228|8095_1 525 IGQILHENKEYEKALKSFQYALRIGnIALGPVHSEIAITLNKMGN 569
                 6888999*************9988623333334445555555555 PP

  == domain 5    score: 18.8 bits;  conditional E-value: 2.1e-07
   TIGR02552  24 lAYnlyqqgkyeeAeklFql.....Laaldpteak...ywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaee 118
                 ++   y++g+++ A+k+++      La+l+p++ +       +a+ +++++ey +Ai+ Y+  + +++++ +p  ++a+ l  +g +++ +++L++a+e  +e
  MMETSP1061-20121228|8095_1 567 MGNVYYETGDLDSALKVYHQgldieLAVLEPANPNiyvTYTNIAEIHKQKGEYGKAIEYYQKVYEIQISQGAPSSEIANTLGSIGYTKQQMEDLDGALEANQE 669
                 5556688888888888887434444666666654410045689******************************************************998875 PP

  == domain 6    score: 1.4 bits;  conditional E-value: 0.051
   TIGR02552  90 yhaaecllalgekeeAlkaLklaieiaee 118
                  h+a +ll+l++   Al+a++ a +i ++
  MMETSP1061-20121228|8095_1 690 THTALVLLKLERHGIALQAFAEAYRIRKS 718
                 57777777777777777777777777654 PP

  == domain 7    score: 7.3 bits;  conditional E-value: 0.00074
   TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldl........ddprpvyhaaecllalgekeeAlkaLklaieiaee 118
                 + +a+ ++ l+ +e+A+++Y + a +++        d  + +y +++ +++ g+ ++Al+ ++ a+ei +e
  MMETSP1061-20121228|8095_1 732 YNIALIYHHLGSHEQALKFYLATAEIEKnglgianrDLSITYYNIGQIFYQRGDMKRALAKFNEALEIERE 802
                 56899999************9999886512222111457899***********************999865 PP

  == domain 8    score: -1.9 bits;  conditional E-value: 0.53
   TIGR02552  57 gLaaclqalkeyeeAiaaYalaaa 80 
                  L+    +++ y++A+ +Y+   +
  MMETSP1061-20121228|8095_1 824 QLGNLDAMMECYSKALRIYKEVGM 847
                 566777788889999988876665 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.22   2.3e+02      49      78 ..     140     169 ..     135     194 .. 0.75
   2 ?    0.9   0.0      0.14   1.4e+02      15      77 ..     282     346 ..     268     366 .. 0.69
   3 !    8.3   0.0   0.00069      0.71      45     102 ..     442     503 ..     440     506 .. 0.85
   4 !    6.5   0.0    0.0025       2.6      45     101 ..     525     586 ..     524     589 .. 0.82
   5 ?    1.4   0.1     0.099     1e+02      46      67 ..     610     631 ..     604     668 .. 0.69
   6 ?   -2.5   0.0       1.5   1.6e+03      70      99 ..     722     751 ..     697     754 .. 0.74
   7 !    8.2   0.0   0.00076      0.78      42     100 ..     773     836 ..     769     846 .. 0.72

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.22
   TIGR02795  49 lyakkkykdAakaflevvkkypksekapda 78 
                 ++++++y++A ++ + +++  +k++ka  +
  MMETSP1061-20121228|8095_1 140 YMERHQYEEARRSLHRALRLVEKENKAGTC 169
                 788889999999999999888888888765 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.14
   TIGR02795  15 egdYakAeqaFkaFlkkYPkst..lapnAqYwlGealyakkkykdAakaflevvkkypksekapd 77 
                 + +Y++  + Fk+  + + +s+  l +   + lG +   +++++dA   f+  + + ++ + + +
  MMETSP1061-20121228|8095_1 282 RNEYDEGMDCFKSPFRLFHNSSrsLDGTVLFNLGRVAHDQGNLEDALGLFKRSLLAIKNCSARDE 346
                 45677777777776666666551144455688899999999999998888887776666555544 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.00069
   TIGR02795  45 lGealyakkkykdAakaflevv....kkypksekapdallklgeslqelgqkekAkktlqev 102
                 +G ++++ +ky+ A +a+le++    k   +s  ++  l++ g+++ ++++ +kA + +qe 
  MMETSP1061-20121228|8095_1 442 IGRMYFQLGKYDLALEAYLEALrirrKCQGDSVDVAATLFNCGQVYHNMERRDKAISLFQEF 503
                 6999****************9822223456788999********************999986 PP

  == domain 4    score: 6.5 bits;  conditional E-value: 0.0025
   TIGR02795  45 lGealyakkkykdAakaflevvk.....kypksekapdallklgeslqelgqkekAkktlqe 101
                 +G+ l ++k+y++A k+f+ +++       p ++  +  l k+g++++e+g+ ++A k++++
  MMETSP1061-20121228|8095_1 525 IGQILHENKEYEKALKSFQYALRigniaLGPVHSEIAITLNKMGNVYYETGDLDSALKVYHQ 586
                 6999999999999999999876422111568999999999999*999999999999999976 PP

  == domain 5    score: 1.4 bits;  conditional E-value: 0.099
   TIGR02795  46 GealyakkkykdAakaflevvk 67 
                 +e   +k++y +A++++++v++
  MMETSP1061-20121228|8095_1 610 AEIHKQKGEYGKAIEYYQKVYE 631
                 4566678888888888888876 PP

  == domain 6    score: -2.5 bits;  conditional E-value: 1.5
   TIGR02795  70 pksekapdallklgeslqelgqkekAkktl 99 
                 p+++  +  +++++ ++ +lg +e+A k +
  MMETSP1061-20121228|8095_1 722 PDQSMLAFTIYNIALIYHHLGSHEQALKFY 751
                 455555566788889999999999987765 PP

  == domain 7    score: 8.2 bits;  conditional E-value: 0.00076
   TIGR02795  42 qYwlGealyakkkykdAakaflevvkky.....pksekapdallklgeslqelgqkekAkktlq 100
                 +Y +G+ +y+++++k+A ++f+e+++        k++  +  l ++g++  +lg+ ++  + ++
  MMETSP1061-20121228|8095_1 773 YYNIGQIFYQRGDMKRALAKFNEALEIErecygAKHPTCARTLNEIGNIEMQLGNLDAMMECYS 836
                 699********************98754111223566666677777777777777666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.44
# Mc/sec: 2618.78
//
Query:       MMETSP1061-20121228|8097_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-50  170.0   2.0    1.2e-50  169.8   1.4    1.0  1  TIGR00309 V_ATPase_subD: V-type ATPase, D subunit


Domain annotation for each model (and alignments):
>> TIGR00309  V_ATPase_subD: V-type ATPase, D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.8   1.4     3e-54   1.2e-50       1     208 [.       1     207 [.       1     208 [. 0.97

  Alignments for each domain:
  == domain 1    score: 169.8 bits;  conditional E-value: 3e-54
   TIGR00309   1 mekvkpTrmeLlklkdklKlakrgyslLkeKrdaLimefvkilervkdvkekveqklkeaisdlieaqavkgevavkeaaksvsteklevdaksknimGVvvpvfeseeiekkvteRgygllstsskvdeaaeiyeeavelivElaelettirlLaeeievTkrRVNalEkviIPrlkntikyInikLdeldrenfvRlKkiksklek 208
                 m++v pTrm  +  k k K a+ g+ lLk+K daL  +f++  +++ + k ++      a+++l++a ++ g+++ k a  s+  ++++v a   n++GV +pvf ++++  +  +   gl+ +++k+    e++  ++e ++ la+l+t++  L+e ++vT+rRVNalE v IP++++  kyI+ +Ldel+re+f RlK+++ k+e+
  MMETSP1061-20121228|8097_1   1 MSNVAPTRMAQQIYKGKKKAAEGGHRLLKKKADALKVKFRDYAKSIAETKSGMSGDASSAFFSLTQAEYAAGNFKQKVAEGSMN-ARIRVGAGVDNVAGVKLPVFTKYDTGAEADNQSLGLIGGGKKIVAVREKFTILLEKLIKLASLQTSFVTLDEAMKVTNRRVNALENVTIPKIEQILKYIERELDELEREDFTRLKLVQGKKEQ 207
                 899***********************************************************************9877766666.**********************************************************************************************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1539.87
//
Query:       MMETSP1061-20121228|8093_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2014.06
//
Query:       MMETSP1061-20121228|8096_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   37.2   0.0    3.3e-10   36.3   0.0    1.3  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    7.3e-05   20.1   0.0    0.00013   19.3   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0      0.27   5.5e+02      31      43 ..     143     155 ..     140     162 .. 0.79
   2 !   36.3   0.0   1.6e-13   3.3e-10      86     179 ..     223     314 ..     215     319 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 0.27
   TIGR03903  31 lCarLshPnivaL 43 
                   a L+hPni++L
  MMETSP1061-20121228|8096_1 143 FLASLEHPNIIKL 155
                 5689*******98 PP

  == domain 2    score: 36.3 bits;  conditional E-value: 1.6e-13
   TIGR03903  86 lqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGiga.LlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLiv 179
                   v  al   h++ +++RDLkP+ni    +      k+ DFG++  L p  +    +++   +   Gs  Y aPe  R ep    +D+Y +GL++
  MMETSP1061-20121228|8096_1 223 FDVCAALDYLHSNHIIYRDLKPDNIGFDIR---GDVKLFDFGLAKeLDPSLKSEGCEEMYELSGNTGSLRYMAPEVARSEPYNLTADVYGFGLLL 314
                 578889999****************87555...5689******8538899999999999999999****************************86 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   6.5e-08   0.00013      89     138 ..     216     265 ..     204     279 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 6.5e-08
   TIGR03724  89 eekelellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                  e +l++  +v  ++  lH++ i++ Dl + Ni ++  +++ l DfGL+k 
  MMETSP1061-20121228|8096_1 216 AE-RLHVSFDVCAALDYLHSNHIIYRDLKPDNIGFDiRGDVKLFDFGLAKE 265
                 44.4578889999999******************965899*********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 2430.80
//
Query:       MMETSP1061-20121228|8099_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   11.0   0.0      0.068   10.4   0.0    1.2  1  TIGR03316 ygeW: probable carbamoyltransferase YgeW


Domain annotation for each model (and alignments):
>> TIGR03316  ygeW: probable carbamoyltransferase YgeW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.7e-05     0.068      50     102 ..     407     459 ..     387     475 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.7e-05
   TIGR03316  50 rdnstrtrfsfasalnllGleaqdldegksqiahGetvretaevisfladaiG 102
                 rd   r rf+   ++++l l+   lde    ++ G ++ e ++vi  ++++ G
  MMETSP1061-20121228|8099_1 407 RDKENRIRFAMGYTMTQLRLHLGCLDELAEVMSRGGSIAECVSVIESCTNVSG 459
                 8999********************************************99877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 2203.82
//
Query:       MMETSP1061-20121228|8104_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 407.97
//
Query:       MMETSP1061-20121228|8106_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|8107_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 804.50
//
Query:       MMETSP1061-20121228|8103_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.34
# Mc/sec: 1731.39
//
Query:       MMETSP1061-20121228|8105_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 1034.51
//
Query:       MMETSP1061-20121228|8108_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       320  (0.0780107); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.33
# Mc/sec: 2623.78
//
Query:       MMETSP1061-20121228|8110_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-11   40.2   0.4    1.3e-10   39.3   0.3    1.5  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.3   3.2e-14   1.3e-10       5      56 ..     111     156 ..     108     157 .. 0.90

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 3.2e-14
   TIGR01557   5 vWteelhrrFlqAvqklGgedkatPkkIlelmkveklTreqvkSHlQkyrlk 56 
                 +Wt e+h+ Flq+++  G+  +   kkI+ l+k ++ T+ q++ H+Qky++k
  MMETSP1061-20121228|8110_1 111 RWTAEEHNLFLQGLELHGK-GW---KKIAGLIK-SR-TVVQIRTHAQKYFQK 156
                 8******************.**...***66665.56.7************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2612.47
//
Query:       MMETSP1061-20121228|8109_1  [L=659]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-83  278.5   6.0    4.8e-43  145.3   1.6    2.8  2  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    7.6e-15   52.5  11.8      6e-13   46.2   3.3    3.0  2  TIGR00898 2A0119: cation transport protein
    3.1e-09   34.2  10.2      7e-05   19.9   0.2    3.4  3  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    1.2e-08   32.1  27.2    3.2e-07   27.4   0.2    3.7  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    1.9e-08   31.5   5.7    1.9e-08   31.5   4.0    3.2  3  TIGR00887 2A0109: phosphate:H+ symporter
    7.7e-07   27.2  33.9    3.8e-06   24.9   1.3    4.1  4  TIGR00880 2_A_01_02: multidrug resistance protein
  ------ inclusion threshold ------
       0.12    8.7  15.5      0.024   11.0   0.9    3.5  4  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.6   0.1   5.8e-42   3.4e-39      16     274 ..      23     316 ..      10     327 .. 0.93
   2 !  145.3   1.6   8.2e-46   4.8e-43     285     510 .]     360     585 ..     340     585 .. 0.82

  Alignments for each domain:
  == domain 1    score: 132.6 bits;  conditional E-value: 5.8e-42
   TIGR00879  16 dedeeeqsanels.amedanledasellltpallgsnyvfvallsllaalagllfgYdtavisaalallkfefkftsnlsd.asssqwglvvsillvGgliga.lfagylsdrfgrkkslliiallfvigailsllaatals...................................vevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifgsgklvanntlgwriplglqlipalllllglfflPesprwLvekgkeeeArkslarlrgeksed 274
                 d+d+ + + ++ +  ++  +  ++s++ ++p+  ++ y+ +al+ l  al+g+l gYd + +s +l+++  +++++ + ++ ++++q+gl vs l +G+lig+ ++++ l +  gr+k + i+a l+++ga+l++++ t l                                    +  li+gR+l G gvG +   +P+Y++E++p ++Rgalvs  +++i+fGi+v+ ++g  +l  ++  +w  + g+++++a+++ll+ f +P s rwL++kg +eeAr+s++ +++++ ed
  MMETSP1061-20121228|8109_1  23 DGDDTNSNSDACQaPAQRNPDIVTSPTPIPPDEPEIDYGGLALVFLAPALGGFLYGYDIGATSFVLSMMRADRDHD-HWWHrFTKVQQGLYVSCLALGALIGShIVLTFLAQTIGRRKEIRIAATLYIVGAMLNVMSGTILAttgyfqwppkwyakngdgsdeyysyeyssigfgwgLVTLIAGRLLYGAGVGFIMHGAPTYMAEMSPSNVRGALVSAKETVIVFGIVVGMLMG--DLQSDYPANWTDLYGYSILFAVPMLLLTFKIPRSKRWLLMKGYHEEARESMQFVYKGNVED 316
                 56666666677778999999999****************************************************9.55668********************945678999***********************9999988899999******************************99*****************************************************99..99999************************************************99998877 PP

  == domain 2    score: 145.3 bits;  conditional E-value: 8.2e-46
   TIGR00879 285 kikreiekesvnks.gaelfslkkriirrlllgvvlqafqQltGiNaimyYsptifenlGvstdtallvsiivgavnvaaTfvaiflvdrfGRrtllliG..aagmaiclfvlgilgvssvtg..sskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflpetkgltleei 510
                 k+k++  ++    s +++  ++  +++ ++ +g+ l   qQ++G   ++ Ys ++fe +G +    ++  i v +++++++f  +  vdr+GR++ll+ G  ++  a+ ++ +g+ g+ +  +   s + + +++ ++ +fi +y++g+gp+ w ++sEi+p+++R++++a++v +n++a f+i++lfp++ e ++g g +Fi+f++  + +l++v f +petkg tleei
  MMETSP1061-20121228|8109_1 360 KAKEKDAANVDDDStVDPTSMWSSKYRKVMGIGMGLLLSQQFSGQPCVLAYSRVLFEAAGWAGH-TSV--ITVTIMGIVSSFT-VTQVDRLGRKSLLAAGstIMLVAVSCLAFGFWGWDENLDgkLSDVKKQLVLWSMFIFISGYQIGFGPISWTVLSEIYPTEIRGSAMALSVEVNFFAKFLIQFLFPVIQE-ALGWGTTFIVFAFNILTGLLFVLFKVPETKGMTLEEI 585
                 3333333333334447777788777899999*****************************9993.333..3444455555554.5689************444444555566666666666669777788***************************************************************.8*************9*********************8 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.4   0.00018      0.11     125     178 ..     106     160 ..     102     166 .. 0.86
   2 !   46.2   3.3     1e-15     6e-13     182     505 ..     202     584 ..     192     585 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00018
   TIGR00898 125 awkvkltqsvvfvGvLlGsl.vlGqlsDrfGRkkvLllstlvtavsgvltafspn 178
                 ++++ l  s++ +G L+Gs  vl  l+ + GR+k + ++     v  +l ++s +
  MMETSP1061-20121228|8109_1 106 KVQQGLYVSCLALGALIGSHiVLTFLAQTIGRRKEIRIAATLYIVGAMLNVMSGT 160
                 5789999***********96256889********999999999999999998865 PP

  == domain 2    score: 46.2 bits;  conditional E-value: 1e-15
   TIGR00898 182 flvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird....WRwLlllvslPlvlflvlvwfvpESpRwlisqgrieeAlkiLkrvAkingk.....................................klpaevlslslekelsekkakkaslldllrtpklrkttlllmllwfttafsYygLvldleelggn.....iYldllisglvelpaklitlllidrLgRrktmaa..slllagvallllllvpeelk......llrtalavvgkagissaFq.....maylytaELYPTvvRnlgvgvcstmarvGsiisPflvyvlge.vslflplvifgvlallagllsll.LPetkgvaLpe 505
                 ++  rlL G g + i+  a + ++E+ p+++R   +   e++  +G+++  l++ l  d    W  L+  + l  v +l+l + +p S Rwl+ +g  eeA+++++ v k n                                       + + +  + + ek++++    ++     + ++k rk++ + m l ++  fs +  vl+ + + ++        +++ ++++ + + ++ +  +drLgR+  +aa    +l++v++l+  +   +         ++  l++ + ++  s +q     +   + +E+YPT +R ++++++  +  +   +  fl+ v++e + +  ++++f+  +l+  l++l+  Petkg++L+e
  MMETSP1061-20121228|8109_1 202 LIAGRLLYGAGVGFIMHGAPTYMAEMSPSNVRGALVSAKETVIVFGIVVGMLMGDLQSDypanWTDLYGYSILFAVPMLLLTFKIPRSKRWLLMKGYHEEARESMQFVYKGNVEdefdrmaetinnlccnhgrsklelddcddsvmgtdsiNNSEDNNKAK-EKDAANVDDDSTVDPTSMWSSKYRKVMGIGMGLLLSQQFSGQPCVLAYSRVLFEaagwaGHTSVITVTIMGIVSSFT-VTQVDRLGRKSLLAAgsTIMLVAVSCLAFGFWGWDENldgklsDVKKQLVLWSMFIFISGYQigfgpISWTVLSEIYPTEIRGSAMALSVEVNFFAKFLIQFLFPVIQEaLGWGTTFIVFAFNILTGLLFVLFkVPETKGMTLEE 584
                 56679*********9999**************************************999999**************************************************999***************************8755555322222222222.22222222334445556888999**********************99988766656666788899999999998885.5689******999873234567888888888766655678888555555555555555555511112457899**********************99999999877665268999*************9999879*******987 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.2     0.049        29     264     308 ..     111     155 ..     100     167 .. 0.70
   2 !   17.8   0.4   5.1e-07    0.0003      88     152 ..     190     255 ..     188     285 .. 0.90
   3 !   19.9   0.2   1.2e-07     7e-05     266     363 ..     424     532 ..     351     578 .. 0.64

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.049
   TIGR00883 264 llvlllalillllviplsgllsdriGrrkvlilltvlaallavpl 308
                 l+v++lal  l+    ++ +l+  iGrrk + ++ +l ++ a++ 
  MMETSP1061-20121228|8109_1 111 LYVSCLALGALIGSHIVLTFLAQTIGRRKEIRIAATLYIVGAMLN 155
                 55555555555556667899999*****98888777777766433 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 5.1e-07
   TIGR00883  88 yatiGi.wApilLlllrliQGlslGgEyggaalllaEsApegkrglygsfqqvgasvglllaalvv 152
                 y++iG+ w  + L++ rl+ G ++G  + ga +++aE++p++ rg + s+++     g++++ l+ 
  MMETSP1061-20121228|8109_1 190 YSSIGFgWGLVTLIAGRLLYGAGVGFIMHGAPTYMAEMSPSNVRGALVSAKETVIVFGIVVGMLMG 255
                 889997688899****************************************99999999998875 PP

  == domain 3    score: 19.9 bits;  conditional E-value: 1.2e-07
   TIGR00883 266 vlllalillllviplsgllsdriGrrkvlilltvlaallavpllsa............llesssillvlllllllalivamytgv.maallaelfptevRytgvslaynla 363
                  +++++ ++ +v +++ +  dr+Gr+++l + ++++++ av +l              l + ++ l+++ ++++++  +++ +g+ + ++l+e++pte+R ++++l+ ++ 
  MMETSP1061-20121228|8109_1 424 TSVITVTIMGIVSSFTVTQVDRLGRKSLLAAGSTIMLV-AVSCLAFgfwgwdenldgkLSDVKKQLVLWSMFIFISG-YQIGFGPiSWTVLSEIYPTEIRGSAMALSVEVN 532
                 34555667778888888899*******66655555444.44444321122222211113333333333333333333.4466776156899****************9874 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.9   1.1e-05    0.0066      19     104 ..      67     160 ..      61     165 .. 0.81
   2 !   27.4   0.2   5.4e-10   3.2e-07     100     215 ..     194     310 ..     187     330 .. 0.78
   3 ?   -0.7   7.8      0.19   1.1e+02      57     199 ..     426     581 ..     418     598 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.1e-05
   TIGR00895  19 lilsflivlvdGldllvlgfaapalske......w.gldkvelGfllsagLiGmvlGa.llfgplaDrigRkrvllvsillfsvftlasalatn 104
                 ++  +l  ++ G+d+ + +f+++ + ++      w   +kv+ G  +s   +G+++G+ ++++ la  igR++ + ++  l  v+ ++ +++ +
  MMETSP1061-20121228|8109_1  67 FLAPALGGFLYGYDIGATSFVLSMMRADrdhdhwWhRFTKVQQGLYVSCLALGALIGShIVLTFLAQTIGRRKEIRIAATLYIVGAMLNVMSGT 160
                 55556778899**************99855555423589******************87899********999888887777777777777655 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 5.4e-10
   TIGR00895 100 alatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipaf..gWrslflvggiiplllllllikvLpEsikflvek.kpekvrkilnaia 215
                 ++ + ++ L++ R+l g G+G ++  + + ++E +p+ +r+ +v+      + G++vg l++  l +++  +W  l+    i+ ++ +lll++ +p s ++l  k   e++r+ ++ + 
  MMETSP1061-20121228|8109_1 194 GFGWGLVTLIAGRLLYGAGVGFIMHGAPTYMAEMSPSNVRGALVSAKETVIVFGIVVGMLMG-DLQSDYpaNWTDLYGYS-ILFAVPMLLLTFKIPRSKRWLLMKgYHEEARESMQFVY 310
                 7788999*************************************876666666655554444.45555433788888888.6666667788999***********87788888776554 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.19
   TIGR00895  57 llsagLiGmvlGallfgplaDrigRkrvllv..sillfsvftlasal...........atnvtqLl...vlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEsikfl 199
                 +++++++G+v  + +  +  Dr+gRk +l+   +i+l++v  la ++           +   +qL+   ++ f++g  +G   p+  + +sE  p+ +r+++++l +        +  +l +++  a+gW + f+v +   l  ll++ + +pE    +
  MMETSP1061-20121228|8109_1 426 VITVTIMGIVS-S-FTVTQVDRLGRKSLLAAgsTIMLVAVSCLAFGFwgwdenldgklSDVKKQLVlwsMFIFISGYQIG-FGPISWTVLSEIYPTEIRGSAMALSVEVNFFAKFLIQFLFPVIQEALGWGTTFIVFAFNILTGLLFVLFKVPETKGMT 581
                 66777777664.3.444557999999998753246677777776664322222222213333566522257788998887.568999999**********9998876655566677778888888899********98766777999999999986655 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.017        10      23     107 ..      72     159 ..      60     192 .. 0.70
   2 ?    2.3   0.4     0.022        13     117     169 ..     201     253 ..     197     257 .. 0.87
   3 !   31.5   4.0   3.3e-11   1.9e-08     343     500 ..     429     586 ..     409     588 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.017
   TIGR00887  23 vGFftDsYDlFaislvtkllgyvYyetk.gklpssvs.alvkasasvgtllgq.llfglladllgrkrvygleliivivatvasalsa 107
                 +G f+  YD+ a s+v  ++     + +  +  ++v+ +l      +g l+g+ ++ ++la+++gr++   +   + iv ++++ +s 
  MMETSP1061-20121228|8109_1  72 LGGFLYGYDIGATSFVLSMMRADRDHDHwWHRFTKVQqGLYVSCLALGALIGShIVLTFLAQTIGRRKEIRIAATLYIVGAMLNVMSG 159
                 6888999************986544433333333333033344446788888637899*******98777777777777666665554 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.022
   TIGR00887 117 tllfyrlllgvGiggdyplsaiitsefatkkrRGaliaavFamqgfGilagai 169
                 tl+  rll g G+g     + + ++e++    RGal++a   +  fGi++g +
  MMETSP1061-20121228|8109_1 201 TLIAGRLLYGAGVGFIMHGAPTYMAEMSPSNVRGALVSAKETVIVFGIVVGML 253
                 566678899999999888889******************99999999998865 PP

  == domain 3    score: 31.5 bits;  conditional E-value: 3.3e-11
   TIGR00887 343 ivlagtvPGYWvtvflvdklGRkaiqlmGFviltvlfvvlaiaynelsek.........gllalyvlaqfFa....nFGPnattFivPaevFPaRlRstahGisaaaGkvGaiiaqlalslladkgaakkgkptgiwvenvleifalvmllGilftlL.iPetkgksleels 500
                 ++++g v    +tv  vd+lGRk +  +G +i+ v +  la+ +  + e+           l+l+++  f +     FGP + t  v +e++P+ +R+ a  +s  +      + q+++ ++++          + + +  +++fa   l G+lf l  +Petkg +lee++
  MMETSP1061-20121228|8109_1 429 VTIMGIVSS--FTVTQVDRLGRKSLLAAGSTIMLVAVSCLAFGFWGWDENldgklsdvkKQLVLWSMFIFISgyqiGFGPISWT--VLSEIYPTEIRGSAMALSVEVNFFAKFLIQFLFPVIQE----------ALGWGTTFIVFAFNILTGLLFVLFkVPETKGMTLEEIQ 586
                 556666664..7999********************************9999999999997888888887765222369998877..669****************9998888888888888877..........57888999***********998755***********97 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.2      0.46   2.7e+02     101     121 ..      67      87 ..      59      93 .. 0.72
   2 !    6.4   1.6    0.0034         2       1      52 [.     110     162 ..     110     168 .. 0.87
   3 !   24.9   1.3   6.5e-09   3.8e-06      47     139 ..     195     287 ..     189     289 .. 0.84
   4 !   11.3   5.9    0.0001     0.059      13     141 .]     435     577 ..     423     577 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.46
   TIGR00880 101 ilGpllGavlaqalgwralfl 121
                  l+p+lG++l+ +      f+
  MMETSP1061-20121228|8109_1  67 FLAPALGGFLYGYDIGATSFV 87 
                 58999***9998866655554 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0034
   TIGR00880   1 glllagyAlgqlvvs.plsglltdrvGrkpvllvglfifvlsqllfalssnit 52 
                 gl++   Alg l+ s +++ +l++ +Gr++ + +   +++++++l ++s +i 
  MMETSP1061-20121228|8109_1 110 GLYVSCLALGALIGShIVLTFLAQTIGRRKEIRIAATLYIVGAMLNVMSGTIL 162
                 799***********94455778899*******************999998876 PP

  == domain 3    score: 24.9 bits;  conditional E-value: 6.5e-09
   TIGR00880  47 lssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqa.lgwralflilallallafilllfllp 139
                 +++ +++li  r+l G g ++++  + +++a++++++ r++ ++   ++i++g+++G l+G +  ++  +w   ++  ++l ++ ++ll+f +p
  MMETSP1061-20121228|8109_1 195 FGWGLVTLIAGRLLYGAGVGFIMHGAPTYMAEMSPSNVRGALVSAKETVIVFGIVVGMLMGDLQSDYpANW-TDLYGYSILFAVPMLLLTFKIP 287
                 6788999*******************************************************999551466.5566666666677777766655 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 0.0001
   TIGR00880  13 vvsplsglltdrvGrkpvllvglfifvlsqllfals...............snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllpeT 141
                 v s +  + +dr+Grk++l  g  i++++   +a++               ++  vl  ++i+++     + ++  +++++i+++e r+ a++l + + +++  l  +l  v+ +algw  +f++ a+  l  ++ +lf +peT
  MMETSP1061-20121228|8109_1 435 V-SSFTVTQVDRLGRKSLLAAGSTIMLVAVSCLAFGfwgwdenldgklsdvKKQLVLWSMFIFISGYQIGFGPISWTVLSEIYPTEIRGSAMALSVEVNFFAKFLIQFLFPVIQEALGWGTTFIVFAFNILTGLLFVLFKVPET 577
                 2.223333689*******************999*99**************9666666666666555555556777799*****************************************9999999998888888999999987 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0    0.0092       5.4      70     122 ..     101     154 ..      83     165 .. 0.80
   2 ?   11.0   0.9   4.1e-05     0.024     128     201 ..     196     269 ..     192     287 .. 0.89
   3 ?   -2.0   0.0      0.36   2.1e+02      46      89 ..     353     404 ..     343     453 .. 0.51
   4 ?    1.9   1.3     0.023        14     160     216 ..     516     573 ..     492     579 .. 0.66

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0092
   TIGR00894  70 efaWseklqGlilssvfygsli.lqipvGylakkygtkkvigaalllssvlsll 122
                  + + + +qGl  s + +g+li   i   +la+  g +k i +a +l +v ++l
  MMETSP1061-20121228|8109_1 101 WHRFTKVQQGLYVSCLALGALIgSHIVLTFLAQTIGRRKEIRIAATLYIVGAML 154
                 34456889************9945799999*****************9998876 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 4.1e-05
   TIGR00894 128 avgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavf 201
                 ++g + +i+ R+l G++ g ++ +  + +a   P + R+ lvsa  +  ++G ++ ++++ l  ++   W  ++
  MMETSP1061-20121228|8109_1 196 GWGLVTLIAGRLLYGAGVGFIMHGAPTYMAEMSPSNVRGALVSAKETVIVFGIVVGMLMGDLQSDYPANWTDLY 269
                 68999********************************************************999*999998876 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.36
   TIGR00894  46 vkkeethessnklaekeldni.knkefaWseklq.......Glilssvfygs 89 
                  ++e++++ + k+a++  d++  +++  Ws+k         Gl+ls +f g+
  MMETSP1061-20121228|8109_1 353 NNSEDNNKAKEKDAANVDDDStVDPTSMWSSKYRkvmgigmGLLLSQQFSGQ 404
                 4445555444444444433334677788887653223333356666666664 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.023
   TIGR00894 160 iPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYif..givgtvvlilwl 216
                  P + R++++++++    +  +++  ++ +i e  lgW + f +f   i + ++++l+ 
  MMETSP1061-20121228|8109_1 516 YPTEIRGSAMALSVEVNFFAKFLIQFLFPVIQEA-LGWGTTFIVFafNILTGLLFVLFK 573
                 4555577777777777777777777777777777.677766655411455555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (659 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 2350.83
//
Query:       MMETSP1061-20121228|8112_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       313  (0.0763042); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 634.80
//
Query:       MMETSP1061-20121228|8115_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1009.72
//
Query:       MMETSP1061-20121228|8114_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.4    2.6  33.4        5.8    2.2  23.2    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  23.2    0.0014       5.8     719     851 ..     118     252 ..      98     304 .. 0.36

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0014
   TIGR00927 719 aklpevtvtpapapedkgdqee..dpgsqgdvaeaeakgertgeeaeae.teaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeG 851
                   + +v v      ++ +d +   d  ++ dv+ +ea ++++g+e+ +   + e +  e+  ++a +egese+   e+++ e e+e   e e e+    +   ++Ge+ e+e e+e    +eG+  eg  ++   G
  MMETSP1061-20121228|8114_1 118 QSIVSVDVDADADVDVDADVDAdvDADVDADVDVTEADSDTEGDEVSTVpEVPEEDIYETPTTDATEEGESETTEGENETTEGESETT-EGETETTDAPEGETTEGETTEGETETEITDAPEGETTEGGDDSSTTG 252
                 3333333333333333333222002223333333333333333333332122222333333344444444444333333333333311.11111111111112233333333333333333332222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 1939.22
//
Query:       MMETSP1061-20121228|8116_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 942.78
//
Query:       MMETSP1061-20121228|8120_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-05   21.5   0.0      3e-05   21.4   0.0    1.1  1  TIGR00010 TIGR00010: hydrolase, TatD family


Domain annotation for each model (and alignments):
>> TIGR00010  TIGR00010: hydrolase, TatD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   7.4e-09     3e-05      90     143 ..       8      70 ..       2      84 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 7.4e-09
   TIGR00010  90 iGEvGLDyykakekk.........kkQkevfeaqlelAeelnlpliiHaRdaeedvleilkee 143
                 +GE+GL  + +  ++         + Qk vf++q+ lA +l++p+ +H+ + +  +++ ++e+
  MMETSP1061-20121228|8120_1   8 VGEIGLCKIAKWVRThpsgkaaamEIQKRVFKKQMVLAAKLRRPVSVHCVNSHGIFVAAIREL 70 
                 68888865544333334555778899***********************99999999888884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 493.52
//
Query:       MMETSP1061-20121228|8119_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-05   20.1   0.0    8.6e-05   19.5   0.0    1.2  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
      0.009   13.0   0.0      0.013   12.5   0.0    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.2e-08   8.6e-05     127     198 ..     219     290 ..     211     298 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.2e-08
   TIGR01622 127 lalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqaseAE 198
                 l+  +++ d++ FF++   v d  ++  r  +r+ G aYv F + +  + A+ l  +++ ++ + + +s+ E
  MMETSP1061-20121228|8119_1 219 LPFSATKEDIYIFFEDYNTVSDSIVLTYRSDGRATGEAYVQFETSDDSKRAMDLHRKMMGNRYIELFLSNKE 290
                 67789999**************************************************99999988877765 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   6.4e-06     0.013     186     237 ..     219     271 ..     206     295 .. 0.57

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.4e-06
   TIGR01628 186 lddsvtedklrelFakfGeit.SaivkkdeknrkrgfafvnyekaedAkkAve 237
                 l+ s t++ +  +F ++  ++ S++ +  +++r+ g a+v++e+++d k+A++
  MMETSP1061-20121228|8119_1 219 LPFSATKEDIYIFFEDYNTVSdSIVLTYRSDGRATGEAYVQFETSDDSKRAMD 271
                 55555566666666666666523333344455666666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1476.32
//
Query:       MMETSP1061-20121228|8118_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.075   10.9   2.4      0.064   11.1   0.3    1.9  2  TIGR04145 Firmicu_CTERM: Firmicu-CTERM domain
       0.82    6.4  15.3        5.3    3.7  10.6    2.1  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR04145  Firmicu_CTERM: Firmicu-CTERM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0      0.77   1.6e+03      15      23 ..      74      82 ..      72      83 .. 0.84
   2 ?   11.1   0.3   3.1e-05     0.064      24      45 .]     107     128 ..     106     128 .. 0.95

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.77
   TIGR04145 15 iaGgSTGPy 23
                 + ++T Py
  MMETSP1061-20121228|8118_1 74 LQASPTAPY 82
                6889****9 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 3.1e-05
   TIGR04145  24 llagIalviAaggvfkirrkrr 45 
                 l+a++++++A++g+f + rkrr
  MMETSP1061-20121228|8118_1 107 LGALVGILFASIGAFHFGRKRR 128
                 79******************98 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  10.6    0.0026       5.3     107     191 ..     360     445 ..     324     449 .] 0.65

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0026
   TIGR01843 107 eeaiefpdillsaed.avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekgl 191
                 +e+ +++++l++ +d  v ++ + ++  +  + ++ r + ++  +q kq ++++++l++q ++++q+l+li++e++a+r    ++l
  MMETSP1061-20121228|8118_1 360 KEQESLNASLYKLNDqLVHQQRELEQTALGMTTKTTRRKHKEHYQQHKQISDKIAELESQKEEISQKLKLIQKEIKAQRRERRRKL 445
                 22233333444422223334444444445556677788888888899999999999999999999999999999999887555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       365  (0.088981); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 1851.97
//
Query:       MMETSP1061-20121228|8121_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.25
# Mc/sec: 227.02
//
Query:       MMETSP1061-20121228|8123_1  [L=806]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   10.9   0.1       0.13    9.1   0.0    1.8  2  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0     0.067   2.8e+02     207     255 ..     218     266 ..     214     271 .. 0.88
   2 ?    9.1   0.0   3.2e-05      0.13      98     149 ..     492     543 ..     481     549 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.067
   TIGR01392 207 lalltYrseesleerfgreakseeslassleeefsvesylryqgkkfve 255
                 +a lt +  +s++er + +  +ee + s+ + e +++ + + qgk f++
  MMETSP1061-20121228|8123_1 218 IARLTEKELDSVNERVASMIDEEEGTPSKKNPETKAQKFAKEQGKDFID 266
                 6778888888999999999999999999999**************9985 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 3.2e-05
   TIGR01392  98 gkpygaefPlvtirDlvkaqkall.dsLgveklaavvGgSlGGmqalewalsy 149
                  ++++a  P + i  +++a++a+l ++ gv++ ++v G  +GG +ale a+ y
  MMETSP1061-20121228|8123_1 492 YETWRATHPDLRISVDIRASAAVLrEQYGVSS-VVVWGTCFGGGRALEIAAGY 543
                 67899*************9999884689**99.7899***********99766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (806 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 2875.22
//
Query:       MMETSP1061-20121228|8125_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 648.95
//
Query:       MMETSP1061-20121228|8127_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 494.96
//
Query:       MMETSP1061-20121228|8122_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1315.00
//
Query:       MMETSP1061-20121228|8130_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|8128_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   15.8   0.0     0.0025   15.1   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
  ------ inclusion threshold ------
      0.019   11.9   0.0      0.041   10.8   0.0    1.5  1  TIGR00536 hemK_fam: methyltransferase, HemK family


Domain annotation for each model (and alignments):
>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.2e-06    0.0025      83     151 ..     188     274 ..     183     302 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.2e-06
   TIGR03534  83 elkkkeklkvlDlgtGsGaIalalakel.................pdakviavDiseeAlkvarkNakrlglke..veflksdlleal 151
                  ++ ++  +vl+lg+G+G ++l++a+++                  + +vi +D  +  l+  ++N+  +g ++  +++   d++++ 
  MMETSP1061-20121228|8128_1 188 LVDGNH-GHVLELGAGCGLVGLTVAAMIrnldqkkceeskneccpLTSSVIFTDYLPMVLENVQRNIWLNGFDKssASVAGLDFFDQP 274
                 554444.79******************9999999999999999987889999999999999999999999988877777777777665 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0     2e-05     0.041     112     164 ..     191     259 ..     178     273 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2e-05
   TIGR00536 112 qeplkhilDlgtGsGcIalalAleip.................naeviavDistdalavaeeNaeklkle 164
                  + + h+l+lg G G ++l++A+ i+                   +vi  D  + +l+ +++N+  +++ 
  MMETSP1061-20121228|8128_1 191 GN-HGHVLELGAGCGLVGLTVAAMIRnldqkkceeskneccplTSSVIFTDYLPMVLENVQRNIWLNGFD 259
                 44.48*********************99999999999988888888888888888888888888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2180.46
//
Query:       MMETSP1061-20121228|8131_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    6.6   8.7        6.3    4.8   6.0    1.9  1  TIGR04073 exo_TIGR04073: putative exosortase-associated protein, TIGR04073 family


Domain annotation for each model (and alignments):
>> TIGR04073  exo_TIGR04073: putative exosortase-associated protein, TIGR04073 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   6.0    0.0015       6.3      13      58 ..      33      78 ..      17      80 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0015
   TIGR04073 13 vatgvlElpkqivlttqeegaaagvtvGllkGvgmtiaRtlvGvve 58
                +++gv+E   + v ++   g+  gv+vG+  Gv+ ++   +vG+++
  MMETSP1061-20121228|8131_1 33 AVVGVAEGVAEGVAEGVLVGVLVGVSVGVSVGVSVSAIGAVVGAAD 78
                4578888888888888888888888888888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       455  (0.110922); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 578.24
//
Query:       MMETSP1061-20121228|8129_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 911.35
//
Query:       MMETSP1061-20121228|8132_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1081.05
//
Query:       MMETSP1061-20121228|8137_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 501.56
//
Query:       MMETSP1061-20121228|8135_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 254.20
//
Query:       MMETSP1061-20121228|8138_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    7.1   6.9        2.6    6.1   4.8    1.7  1  TIGR03141 cytochro_ccmD: heme exporter protein CcmD


Domain annotation for each model (and alignments):
>> TIGR03141  cytochro_ccmD: heme exporter protein CcmD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   4.8   0.00063       2.6      13      42 ..      23      52 ..      21      70 .. 0.92

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00063
   TIGR03141 13 aYgitalvLaglivwslldrrrllrelrrl 42
                ++ ++a++L+++iv + l+ rr ++el+r 
  MMETSP1061-20121228|8138_1 23 CVLAAAIALVIVIVIVFLRVRRGRQELARS 52
                77899**********************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       346  (0.0843491); expected 82.0 (0.02)
Passed bias filter:                      298  (0.0726475); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 509.10
//
Query:       MMETSP1061-20121228|8139_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.66    7.8   6.7       0.69    7.7   4.6    1.1  1  TIGR01453 grpIintron_endo: group I intron endonuclease
        2.8    6.1   7.7          2    6.6   3.2    1.9  2  TIGR02448 TIGR02448: conserverd hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR01453  grpIintron_endo: group I intron endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   4.6   0.00034      0.69     121     159 ..      14      55 ..       2      73 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00034
   TIGR01453 121 gkthseetkakiskkklgeknskfgkkhseetkkkis...kk 159
                   t++e tk + sk++++e ++++gk+h++  k++ +    k
  MMETSP1061-20121228|8139_1  14 STTKTEDTKTEESKEADDEEAEEVGKSHEDAEKEESKvmdDK 55 
                 446777888888888888888888888888888874433322 PP

>> TIGR02448  TIGR02448: conserverd hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.2     0.095     2e+02      51      60 ..       4      13 ..       1      21 [. 0.72
   2 ?    6.6   3.2     0.001         2      29      60 ..      35      66 ..      13      71 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.095
   TIGR02448 51 vieArddaas 60
                   A+dda+s
  MMETSP1061-20121228|8139_1  4 TESAQDDASS 13
                5578888887 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.001
   TIGR02448 29 ravaassavtsdvtssfkddKlvieArddaas 60
                + v++s + + +  s + ddK    A+dda+s
  MMETSP1061-20121228|8139_1 35 EEVGKSHEDAEKEESKVMDDKKTESAQDDASS 66
                56899999999999****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       295  (0.0719161); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 424.66
//
Query:       MMETSP1061-20121228|8141_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 625.21
//
Query:       MMETSP1061-20121228|8134_1  [L=746]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-09   35.3   0.0    4.9e-09   33.6   0.0    1.7  2  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
    6.9e-08   30.1   4.4      0.008   14.2   0.0    5.6  6  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.24     5e+02     112     141 ..     305     334 ..     302     366 .. 0.71
   2 !   33.6   0.0   2.4e-12   4.9e-09      14      98 ..     500     588 ..     492     592 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.24
   TIGR00091 112 pkflkevaevLkkgGvielktDveklfedm 141
                  +f+k+ + +Lk gG++  k  ++++  + 
  MMETSP1061-20121228|8134_1 305 LNFAKASKDALKSGGSFSRKRGWKEIEKKE 334
                 579999999999999998888877766554 PP

  == domain 2    score: 33.6 bits;  conditional E-value: 2.4e-12
   TIGR00091  14 gnkkplvleiGcGkGrfliklAkqnpeknflGiEiekpivlkain.kaeklglk...NlkvlcgdakkllekfipkgslskvflnFpdP 98 
                 ++++ + +e+G G+G  ++  A q p  +fl +E++   v++    +a  + +k   Nl v+  d  +ll + i+++s+  +++n p+P
  MMETSP1061-20121228|8134_1 500 NKSRRVEIELGAGFGDWIVRKAIQDPSTDFLAVELRADRVAQIFSrTAVLSSVKpvdNLCVVGADSGNLLSNHISDESIDTIYVNHPEP 588
                 5788999******************************99999875256667777777*******************************9 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.027        55      10      23 ..      73      86 ..      70      89 .. 0.89
   2 ?    2.3   0.0     0.022        46       5      26 ..     102     123 ..     100     131 .. 0.87
   3 !   14.2   0.0   3.9e-06     0.008       4      29 ..     136     161 ..     133     166 .. 0.89
   4 ?   -1.0   0.0      0.26   5.3e+02       2      10 ..     172     180 ..     171     181 .. 0.88
   5 !    7.1   0.0    0.0007       1.4       7      29 ..     233     255 ..     228     259 .. 0.87
   6 ?   -0.9   0.0      0.25   5.1e+02      14      30 ..     706     722 ..     705     722 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.027
   TIGR00756 10 lckagrveeAlelf 23
                l++++++eeAl +f
  MMETSP1061-20121228|8134_1 73 LSREKKLEEALAVF 86
                89**********99 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.022
   TIGR00756   5 tlisglckagrveeAlelfdeM 26 
                 ++++  ++ g++ e+++l+++ 
  MMETSP1061-20121228|8134_1 102 IMVDMAARCGNIAEGEKLLEKV 123
                 899***************9875 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 3.9e-06
   TIGR00756   4 ntlisglckagrveeAlelfdeMker 29 
                 ++l++g c++g++ +A+elf +M+ +
  MMETSP1061-20121228|8134_1 136 TALLKGICHSGDIGKAHELFSSMCLS 161
                 79*********************865 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 0.26
   TIGR00756   2 tyntlisgl 10 
                 t ntl++g+
  MMETSP1061-20121228|8134_1 172 TLNTLLRGC 180
                 88******9 PP

  == domain 5    score: 7.1 bits;  conditional E-value: 0.0007
   TIGR00756   7 isglckagrveeAlelfdeMker 29 
                 i  lc+a rv++A ++  eMk++
  MMETSP1061-20121228|8134_1 233 ITLLCQALRVDDAASVISEMKSA 255
                 6679****************986 PP

  == domain 6    score: -0.9 bits;  conditional E-value: 0.25
   TIGR00756  14 grveeAlelfdeMkerg 30 
                 g+ ee++++fd++ ++g
  MMETSP1061-20121228|8134_1 706 GSSEEGESYFDRLWRAG 722
                 7889*******998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (746 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 2896.00
//
Query:       MMETSP1061-20121228|8142_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0051   14.1   0.1      0.054   10.7   0.1    2.0  2  TIGR03943 TIGR03943: TIGR03943 family protein


Domain annotation for each model (and alignments):
>> TIGR03943  TIGR03943: TIGR03943 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   1.3e-05     0.054      45     100 ..       5      59 ..       2      62 .. 0.87
   2 ?    1.1   0.0     0.011        46      14      77 ..     163     189 ..     154     211 .. 0.46

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.3e-05
   TIGR03943  45 hhhehktklkrrlvylllllpillgllvppaalgsdtaaqrglafsslkqdrkepq 100
                 +h+++k+ +++++++ l l++++++l+ +p++ g +++    +++ s+++++  p+
  MMETSP1061-20121228|8142_1   5 SHAMRKKAMHSFRMASLALIAAFAVLFAAPSVRGEEMVTPATISE-SAEAEEPTPF 59 
                 58899********************************99998888.6666666555 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.011
   TIGR03943  14 fplllaaavvllllalvqllrdvrekeeeaehhhehktklkrrlvylllllpillgllvppaal 77 
                   ++l+   v l+la++  l                                      v+ +  
  MMETSP1061-20121228|8142_1 163 ARWSLIGVSVALFLAIWIGLF-------------------------------------VAIRCK 189
                 455555555555555554333.....................................222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 973.99
//
Query:       MMETSP1061-20121228|8140_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 1247.90
//
Query:       MMETSP1061-20121228|8143_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 2233.66
//
Query:       MMETSP1061-20121228|8144_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 647.95
//
Query:       MMETSP1061-20121228|8145_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1061-20121228|8147_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 327.10
//
Query:       MMETSP1061-20121228|8150_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 459.09
//
Query:       MMETSP1061-20121228|8152_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.40
# Mc/sec: 488.36
//
Query:       MMETSP1061-20121228|8146_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.83
# Mc/sec: 901.66
//
Query:       MMETSP1061-20121228|8149_1  [L=1050]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1050 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.49
# Mc/sec: 2828.34
//
Query:       MMETSP1061-20121228|8158_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|8155_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-34  116.3   0.0    3.6e-34  116.0   0.0    1.0  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    1.3e-28   97.1   0.1    2.2e-28   96.3   0.0    1.4  2  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA


Domain annotation for each model (and alignments):
>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.0   1.7e-37   3.6e-34     309     632 ..       1     347 [.       1     350 [. 0.72

  Alignments for each domain:
  == domain 1    score: 116.0 bits;  conditional E-value: 1.7e-37
   TIGR01970 309 krisqasadqraGraGrlepGvclrLwseeqaerl.aaaaepeilqadLaglalelarWGak.ps....dlrfldaPPaaalaaakeLLqrlgaldaeg.....kltahGkalaeLgvePrlaalllsa...kseeeaalaaelaal..Leerdlerkggadlaarlealqqerkgrkgad......lqrakqllkklrralklskvdsaaieaea..........lGlllalaypdriakrrgk...dtgeyqLanGrgalleaedaLakeewLvvadlkeeeakkeerillaaeldealleeelaelveredqvdwdekkgklkaerqlkvgqlvlkseklakpdeakiaaalleav 632
                 +ris+asa qr+GraGr++ G clrL++e++ e+  ++++ pei+ +dLa+++l la WG++  s    d+ f+d P  a+l +a++ L  +gal+  g      lt++G+++ +++++Prla  + +a   + e+e  laa++aa   L++++  +    + +++ + +  + +   ++        ++   ++++   +   ++v++  ++  +          lG+ +   + d + +r+g    d+++y La G++ +l  +++     ++++   +++  +  +r+ + ++l+++lle+     ve+e       k  +++a++  +vg++ l+s +l+ p++++i +allea+
  MMETSP1061-20121228|8155_1   1 TRISRASAIQRSGRAGRVQEGSCLRLYTETDFEQDfSEQSPPEIVSTDLAPILLLLADWGTStVSeilhDMPFVDPPDQASLQRAERFLVEIGALERTGdnhrfLLTDRGRKISKMPCHPRLATAISEArkrTGEDETLLAASIAAAfcLDDESSAQA---GTSTNGNNNDPNLAYTIQSVlqtpfkFAALVRFARRVCSTEGQTSVEALQKN--EndfetraisnLGKAMLPGFVDLVGERKGDasyDSSNYFLALGKSCRLGFRQS---PSYILAV-ATNTGPDGISRVRSYVPLEKDLLEQLA---VEKELLYTVPSKGYQVRAKKVRSVGRIELSSSPLPIPSSDRISQALLEAM 347
                 59****************************988751677889******************986442333789***********************98775555569*********************9976656677788888887511444433322...2222222222222221112211111233333333333333222333322222..133555667779**9************9963336789***********87653...2333333.333435678999999******999865...45555666788999*********************************975 PP

>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.0   1.1e-31   2.2e-28     377     517 ..       2     152 ..       1     213 [. 0.86
   2 ?   -2.1   0.0     0.053   1.1e+02     595     657 ..     206     269 ..     185     272 .. 0.70

  Alignments for each domain:
  == domain 1    score: 96.3 bits;  conditional E-value: 1.1e-31
   TIGR01967 377 pisqasanqrkGrcGrvaeGicirlyseedfnsr.PeftdPeilrtnlasvilqmlalrlGdi....aafPfieaPdkrairdGlrlleeldalkedeae..ikltpiGrqlaqlPvdPrlarmlleaerlgclqevli...iasalsiqd 517
                 +is+asa qr+Gr Grv+eG c+rly e df++   e   Pei+ t+la ++l ++  +   +    +++Pf+++Pd+ +++   r+l e++al++  ++  + lt+ Gr+++++P  Prla  + ea++     e l+   ia+a+ + d
  MMETSP1061-20121228|8155_1   2 RISRASAIQRSGRAGRVQEGSCLRLYTETDFEQDfSEQSPPEIVSTDLAPILLLLADWGTSTVseilHDMPFVDPPDQASLQRAERFLVEIGALERTGDNhrFLLTDRGRKISKMPCHPRLATAISEARKRTGEDETLLaasIAAAFCLDD 152
                 79*****************************986368899**************9988766542224799************************9976665589*************************9999999887333455555555 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.053
   TIGR01967 595 elglkvneep.adydaihkallsGllsqiGakdekkeysGarnrkflifPgsel.akksPkwvma 657
                  l+ + n+      +++ ka+l G++  +G ++++  y+ +    + +  +  l +++sP +++a
  MMETSP1061-20121228|8155_1 206 ALQKNENDFEtRAISNLGKAMLPGFVDLVGERKGDASYDSSN-YFLALGKSCRLgFRQSPSYILA 269
                 5555555433145678999***************99999764.3333344444535677777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1456.00
//
Query:       MMETSP1061-20121228|8159_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1784.49
//
Query:       MMETSP1061-20121228|8154_1  [L=1331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.12s 00:00:00.68 Elapsed: 00:00:00.37
# Mc/sec: 4748.04
//
Query:       MMETSP1061-20121228|8164_1  [L=1022]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       742  (0.180887); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.14s 00:00:00.80 Elapsed: 00:00:00.48
# Mc/sec: 2810.27
//
Query:       MMETSP1061-20121228|8156_1  [L=1021]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.12s 00:00:00.58 Elapsed: 00:00:00.39
# Mc/sec: 3455.41
//
Query:       MMETSP1061-20121228|8162_1  [L=753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-11   42.8   0.0    2.6e-11   41.6   0.0    1.6  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    2.2e-10   38.5   0.0    5.5e-10   37.2   0.0    1.7  1  TIGR01068 thioredoxin: thioredoxin
    1.1e-07   29.7   0.1    1.8e-07   28.9   0.1    1.4  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    5.8e-05   20.4   0.0    0.00018   18.8   0.0    1.7  2  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
  ------ inclusion threshold ------
      0.027   11.9   0.1       0.06   10.8   0.0    1.5  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   3.2e-14   2.6e-11      12      83 ..     189     260 ..     177     280 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 3.2e-14
   TIGR01126  12 denkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkk 83 
                 +++k ++++ +aPWC  Ck laP++++l ++ + ++  v+ a+++ + +k+  ++++v + Pt++++  g  
  MMETSP1061-20121228|8162_1 189 NQDKLIVLKVFAPWCKACKGLAPKFQRLVNDETYKTLPVVWADLNIQGNKDFVKTIGVLALPTVQLYAGGGL 260
                 456677789********************999999999***************************9988765 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   6.7e-13   5.5e-10      11      79 ..     188     259 ..     177     285 .. 0.81

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 6.7e-13
   TIGR01068  11 assdklvlvDfwAeWCgpCkmlaPvleelakeleek...vkvvKlnvdeeqeiaakygirsiPtlllfkngk 79 
                 +++dkl+++  +A+WC +Ck laP ++ l ++++ k   v  + ln++ +++  +++g+ ++Pt+ l+  g 
  MMETSP1061-20121228|8162_1 188 NNQDKLIVLKVFAPWCKACKGLAPKFQRLVNDETYKtlpVVWADLNIQGNKDFVKTIGVLALPTVQLYAGGG 259
                 35689999*******************99776554433478899*********************9998875 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   2.2e-10   1.8e-07     360     427 ..     188     258 ..     173     346 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 2.2e-10
   TIGR01130 360 ldetKdVLvefYApWCGHCkkLapiYeela..ekykkeedvviakldataN.dvpe.fevegFPTilfvpag 427
                 ++++K + ++++ApWC  Ck Lap++++l   e+yk    vv a l+   N d  + + v + PT+ ++  g
  MMETSP1061-20121228|8162_1 188 NNQDKLIVLKVFAPWCKACKGLAPKFQRLVndETYKTL-PVVWADLNIQGNkDFVKtIGVLALPTVQLYAGG 258
                 45667778899999999999999999999633567775.699999987777344444999999999887665 PP

>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.52   4.3e+02     145     185 ..      41      81 ..      27      89 .. 0.80
   2 !   18.8   0.0   2.2e-07   0.00018     137     243 ..     347     462 ..     300     467 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.52
   TIGR03896 145 ilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYil 185
                 i+  ++ + +  +   G+++++ + t++   + ++++  ++
  MMETSP1061-20121228|8162_1  41 IIHHWNATSITNILTKGTNERIQSKTIVTMAKSTIPTSAVV 81 
                 56678888888899999999999999988888888765554 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.2e-07
   TIGR03896 137 epLrkvLlilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedg..........asrevgs.srrGeilGelsflnsdlaatatvkavealvlLaidkee 243
                   Lrkv   l+++ e++ + l    +   + ag ++++eg+   ++Yi+L+Ge+e+   +             ++ + + + +G+ +Ge ++l ++   +a+++a   +  La dk +
  MMETSP1061-20121228|8162_1 347 PFLRKVKY-LSDMLESEYEELLTKATLLTFEAGSIVMREGNVGRTFYIILEGEVEICQRTSFedplttppsyLGTVINQfTHKGDFFGERALLTGEPR-AASIRASSRTKCLAFDKGS 462
                 55777765.45556666666667777778888888888888888888888888888654433457888776655666552468888888888888877.7888888888888888865 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   7.3e-05      0.06      61      91 ..     189     219 ..     174     245 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 7.3e-05
   TIGR00385  61 kkgklvLlnvwasWCptCraehplLkelake 91 
                 ++ kl++l v+a WC  C+   p  ++l ++
  MMETSP1061-20121228|8162_1 189 NQDKLIVLKVFAPWCKACKGLAPKFQRLVND 219
                 578999*************988888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 3206.06
//
Query:       MMETSP1061-20121228|8165_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.5e-05   19.0   6.0     0.0002   17.2   3.6    2.0  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
       0.01   14.3   1.4        5.6    5.4   0.0    3.5  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0     0.023        47     150     203 ..      25      79 ..      12      84 .. 0.65
   2 !   17.2   3.6   9.8e-08    0.0002     605     762 ..      75     232 ..      68     253 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.023
   TIGR02917 150 qAlaiapksleaklglAqlalaenkldearalvdevLtadpkn..vdAllLkgdll 203
                 +A++i  + ++a l + + +l   + + a++  d+v++ d +    +Al+L++++ 
  MMETSP1061-20121228|8165_1  25 EAKSIMRRPMSADLKAEREELV-ARCQIAMKDYDRVISGDTSTpgLKALALQAQYT 79 
                 4445555555555543333333.267789999999998876542379999999886 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 9.8e-08
   TIGR02917 605 ellgraqlaakdlkkavesfkkllelqpdsalalllladvyavak..nkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllkelekqkpkaalgfeleGdlalrqkd..ykaAiqaykkalkrapssqtvikL.aeallasgntaeAaktleaw 762
                 ++  +++ a++d ++ +++ +kl +  +d   + +++++++ + +   k++Al+ + ++L++++       l +q++l  +rl+ A + l++l    + + l +    ++al+     + +A+  +++  +++  s ++ +L a a+ ++gn aeA++ l + 
  MMETSP1061-20121228|8165_1  75 QAQYTTLAATGDTAQTLPVIQKLQSMLGDGVSPRVQVTAAQVFLQagMKKEALQCVHQGLTMEQS-----SLCIQIYLMIDRLDLAQQALQQLRRTDEDSMLTQLASVQVALATGSsmAGDAVHTLNQISEQYGPSPMLLNLmACAQMQAGNYAEAEQKLSQA 232
                 45556788999999999999999999999888877776666554411689999999999999998.....677888888999999999999999999998888877777777755411678999999999998888777766367899999999999998775 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.0    0.0027       5.6      33      55 ..       4      26 ..       2      31 .. 0.85
   2 ?    1.7   0.0      0.04        82      76     109 ..     173     205 ..     144     211 .. 0.62
   3 ?    3.8   0.1    0.0087        18       9      27 ..     213     231 ..     205     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0027
   TIGR02795 33 PkstlapnAqYwlGealyakkky 55
                P++ ++  Aq+wlG  ++a  + 
  MMETSP1061-20121228|8165_1  4 PDELYTLRAQFWLGHYQMALDEA 26
                7888999********99987765 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.04
   TIGR02795  76 pdallklgeslqelgqkekAkktlqevikrYPks 109
                   a ++++ +   +  + +A +tl+++ ++Y  s
  MMETSP1061-20121228|8165_1 173 QLASVQVALATG-SSMAGDAVHTLNQISEQYGPS 205
                 333333333332.334668999999999999655 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.0087
   TIGR02795   9 allvlkegdYakAeqaFka 27 
                 a  ++++g+Ya+Aeq++ +
  MMETSP1061-20121228|8165_1 213 ACAQMQAGNYAEAEQKLSQ 231
                 5678999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1437.21
//
Query:       MMETSP1061-20121228|8169_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2450.60
//
Query:       MMETSP1061-20121228|8170_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|8172_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 549.95
//
Query:       MMETSP1061-20121228|8173_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|8174_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 958.66
//
Query:       MMETSP1061-20121228|8176_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   11.7   0.0      0.042   11.4   0.0    1.3  1  TIGR00980 3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17


Domain annotation for each model (and alignments):
>> TIGR00980  3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0     1e-05     0.042      63     124 ..      73     137 ..       6     141 .. 0.59

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1e-05
   TIGR00980  63 nfavwGGlfst..idc.alvavrkkedPwnsivsGaltGallavrsGpkamagsailgavllali 124
                 n  ++G l++   + c +   vr+k+dPwn +   +++          +a+    ++g+++la i
  MMETSP1061-20121228|8176_1  73 NALIFGSLLAVqrFACkSTEFVRGKQDPWNDVAGCFVAYPYYQTCLTKHAVLHNRVVGGMILASI 137
                 3345677665422667345679********98777777666666666777777777777777755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 857.93
//
Query:       MMETSP1061-20121228|8177_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       355  (0.0865431); expected 82.0 (0.02)
Passed bias filter:                      185  (0.0451); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 459.09
//
Query:       MMETSP1061-20121228|8171_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-82  274.0   0.1    1.3e-81  272.0   0.0    1.9  1  TIGR00858 bioF: 8-amino-7-oxononanoate synthase
    6.8e-55  184.1   0.0    1.5e-48  163.2   0.0    2.1  2  TIGR01825 gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase
    3.5e-52  175.5   0.0    1.4e-50  170.1   0.0    2.3  1  TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase
    9.2e-41  137.9   0.0      2e-39  133.4   0.0    2.0  1  TIGR01822 2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
  ------ inclusion threshold ------
      0.042   10.7   0.0      0.063   10.1   0.0    1.3  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein


Domain annotation for each model (and alignments):
>> TIGR00858  bioF: 8-amino-7-oxononanoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.0   0.0   1.6e-84   1.3e-81       5     363 ..      51     448 ..      47     450 .. 0.87

  Alignments for each domain:
  == domain 1    score: 272.0 bits;  conditional E-value: 1.6e-84
   TIGR00858   5 lrllseaaeaeveidgrellnfssNdYLgLakhpelieaaqealeky...gagstaSrlvsGnsklheelEeelaefkgteaallfssGylaNlgvisalvekedlvlsDklnHAslidgarLska.kvlrykHndvealerlLekerg.err.............klivtdgvFSmDGdvaplkelvalaeryealllvDdAHgtGvlGedGrGlleefglkkeevdi.lvgTlsKalgslGavvvgsealidyLlnrartfifsTalpPavvaaalaaleliq..eeperreklakliarlrkeleklg...................felkesetpivplligeeeealalaeelqee...gilvaaiRpPTVpkgtaRlRltlsaahteedielllea 363
                 l++++   +++ ++  + +++fs+NdYLgLa++ +  +a+++a ++    g+gst+Srl++G+s+  ++lE++la+++++ aall +sGy aNl+v+s l   ++ vl D+l H s+  g rLs+  +++ ++H ++++lerlL++ ++ e++             ++iv+++v+SmDGd apl +++ la r++a+++vD+AHg+GvlG++G Gl+e++gl++++  +  v T++Ka g  Gavv+gs++l+ +Lln  r+ i+sT+lp +++ ++  + e +     ++ r+++ ++++ +rk + +                     ++l++s++pi  l++  + + +++ ++l e+    i   +iR PTVp+g++R+R+ l+++ te+++  l+e 
  MMETSP1061-20121228|8171_1  51 LKPIR---RESSTASSHATIDFSTNDYLGLAQSIRQQQAVEDAYARLplrGLGSTGSRLLTGDSDYAQSLEARLAKWHRRPAALLCNSGYDANLSVLSCLSL-NSRVLMDELCHNSIQMGLRLSRGyTLRTFRHSCLKDLERLLMELENeEKEkvprsalppntkpAVIVVESVYSMDGDAAPLGQILDLALRHNACVVVDEAHGLGVLGDRGLGLIEQLGLEHHPSLLcSVHTFGKAAGCHGAVVCGSRHLKSFLLNYGRPIIYSTSLPLHSLVSIACSYESMTsrIGDALRTTVGDRVRLFRKLFAERIlgtassssssssssslplkIRLVASDSPIHALIVPGNMQCVEFCDRLYEKsnrSIRLYPIRSPTVPRGQERVRIILHSHNTEAQVIDLMEL 448
                 44443...44456777889**************9999999999888633379*********************************************99975.67899****************9725567************9876553333122222222222258*******************************************************9987662689*****************************************999999999884456899999999999999987766556778999999****9999999************************97652227999***************************9999876 PP

>> TIGR01825  gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.2   0.0   1.9e-51   1.5e-48       7     275 ..      38     325 ..      33     365 .. 0.87
   2 !   19.0   0.0   1.2e-07   9.8e-05     307     375 ..     378     449 ..     370     459 .. 0.82

  Alignments for each domain:
  == domain 1    score: 163.2 bits;  conditional E-value: 1.9e-51
   TIGR01825   7 elkenglyveirvlesaqgpevkvngkkvinlssnnylGlaahprlkea...akeaiqqyGvGaGavrtiaGtlelheeleeklakfkkteaalvfqsGfntnlgvlsallrkedivlsdelnhasiidGlrlska.kkkiykhvdmddlerklrenkek..............kkklivtdGvfsmdGdvaplpeivelaekydalvyvddahgsGvlGekGrGtvkhfgledk..vdiqvGtlskaiGvvGGyvaGskelieylkararPflfstalaPavvaaiie 275
                 +lk++    ++r l+  ++ + +   +  i++s+n+ylGla+  r ++a   a + +   G G+   r ++G  +  + le +lak+ ++ aal+ +sG+++nl+vls+ l+ +  vl del h si  Glrls+  +   ++h+ ++dler l e  ++              k  +iv + v+smdGd apl +i++la +++a v+vd+ahg GvlG++G G ++ +gle +      v t+ ka G  G  v Gs++l+ +l + +rP ++st+l+     +i+ 
  MMETSP1061-20121228|8171_1  38 KLKQRTEKGSLRRLKPIRRESSTASSHATIDFSTNDYLGLAQSIRQQQAvedAYARLPLRGLGSTGSRLLTGDSDYAQSLEARLAKWHRRPAALLCNSGYDANLSVLSC-LSLNSRVLMDELCHNSIQMGLRLSRGyTLRTFRHSCLKDLERLLMELENEekekvprsalppntKPAVIVVESVYSMDGDAAPLGQILDLALRHNACVVVDEAHGLGVLGDRGLGLIEQLGLEHHpsLLCSVHTFGKAAGCHGAVVCGSRHLKSFLLNYGRPIIYSTSLPLHSLVSIAC 325
                 6777777778899999999999999****************9877665511156667778***********************************************97.577888999***************87256789**********99875554456788888888766789******************************************************9651155699************************************99776666555 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.2e-07
   TIGR01825 307 dlgesetPitPvllgdekvakefsrrllde...gvfaksivfPtvprgtarirnivtaehtkddldqalday 375
                  l  s+ Pi  +++  +  + ef +rl+++   ++    i  Ptvprg+ r+r i+ +  t  ++ + ++ +
  MMETSP1061-20121228|8171_1 378 RLVASDSPIHALIVPGNMQCVEFCDRLYEKsnrSIRLYPIRSPTVPRGQERVRIILHSHNTEAQVIDLMELI 449
                 577899**********************97555799999****************98888877665555554 PP

>> TIGR01821  5aminolev_synth: 5-aminolevulinic acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.1   0.0   1.8e-53   1.4e-50      41     394 ..      60     453 ..      33     460 .. 0.80

  Alignments for each domain:
  == domain 1    score: 170.1 bits;  conditional E-value: 1.8e-53
   TIGR01821  41 edgkkdvtvWcsndylglskhpkvleamkealdk...vGaGaGGtrnisGtnkslveleaeladlhkkesalvfssgyvandatlatlakilpdlvifsdelnhasmieGikkska.ekvifrhndvaelekllesad..............kkaPkliafesvysmdGdiapikeicdladkygaltyldevhavGlyGprGaGiaerdgvmdridiie..GtlakafGvlGGyiaasaklidavrslapgfifttslpPavaagalasirhlkes..qklreaqqekvkklkklleel...............glP....vlkneshivPvliGdaakakkvsdllleky..giyvqainyPtvargterlrltPtPvhtdklidelveallevf 394
                  ++++    + +ndylgl++  +  +a+++a  +    G G+ G r ++G++ +  +lea la+ h++ +al+  sgy an ++l+ l+    +  ++ del h+s+  G++ s++   + frh  +++le+ll + +              +++P +i++esvysmdGd ap+ +i+dla +++a   +de h +G+ G+rG G+ e+ g+ ++  ++    t++ka G+ G  +++s++l  ++  +    i++tslp + + +   s + + ++  ++lr++  ++v+ ++kl+ e+               +lP    ++ ++s i  +++    ++ + +d l ek   +i + +i  Ptv+rg+er+r++   + t++++ +l+e + +  
  MMETSP1061-20121228|8171_1  60 TASSHATIDFSTNDYLGLAQSIRQQQAVEDAYARlplRGLGSTGSRLLTGDSDYAQSLEARLAKWHRRPAALLCNSGYDANLSVLSCLSL---NSRVLMDELCHNSIQMGLRLSRGyTLRTFRHSCLKDLERLLMELEneekekvprsalppNTKPAVIVVESVYSMDGDAAPLGQILDLALRHNACVVVDEAHGLGVLGDRGLGLIEQLGLEHHPSLLCsvHTFGKAAGCHGAVVCGSRHLKSFLLNYGRPIIYSTSLPLHSLVSIACSYESMTSRigDALRTTVGDRVRLFRKLFAERilgtassssssssssSLPlkirLVASDSPIHALIVPGNMQCVEFCDRLYEKSnrSIRLYPIRSPTVPRGQERVRIILHSHNTEAQVIDLMELIRSTL 453
                 344444445789***********999999997762326********************************************99999985...567889*************998725689***********9965431111111111111134789*********************************************************9998852269************************************8766555555555544444889999999999999998765222222222222222344222257788889999999999*********98752279999*****************999999999999988777655 PP

>> TIGR01822  2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.4   0.0   2.5e-42     2e-39      35     377 ..      61     443 ..      49     452 .. 0.78

  Alignments for each domain:
  == domain 1    score: 133.4 bits;  conditional E-value: 2.5e-42
   TIGR01822  35 adGrevlnfcannylGlsdhpeviqaakda...ldehGfGlssvrficGtqdlhkelekklaeflgtedailyascfdangGlfeallgeedaiisdalnhasiidGvrlckakryr.yenadledleaklkearaa............garlrliatdGvfsmdGtiapldeicalaekydalvlvdechatGflGatGrGsaelldvldkvdiitg..tlGkalGGasGGfttakkevvellrqrsrpylfsnslapa.vvgasikvlelle.asnelrdklventryfre....kl..eaaG.............fdvkpaehaiipvmlydaklaqklaerlleeGiyviGff...ypvvpkGqarirvqlsaaheeeqld 377
                 a  +  ++f +n+ylGl++  +  qa +da   l  +G+G +  r++ G  d  ++le++la+++++  a+l +s +dan  ++  l + +  ++ d+l h si  G+rl +    r ++++ l+dle+ l e +++             ++  +i+ + v+smdG+ apl +i +la +++a v+vde+h  G+lG++G G  e+l++  +  ++ +  t+Gka  G  G   ++ +++ ++l +  rp ++s sl+ + +v+ +     + +  ++ lr+ + +++r fr+    ++  +a                 + +++++i ++++     + ++ +rl e+    i ++    p vp+Gq r+r+ l +  +e+q+ 
  MMETSP1061-20121228|8171_1  61 ASSHATIDFSTNDYLGLAQSIRQQQAVEDAyarLPLRGLGSTGSRLLTGDSDYAQSLEARLAKWHRRPAALLCNSGYDANLSVLSCL-SLNSRVLMDELCHNSIQMGLRLSRGYTLRtFRHSCLKDLERLLMELENEekekvprsalppNTKPAVIVVESVYSMDGDAAPLGQILDLALRHNACVVVDEAHGLGVLGDRGLGLIEQLGLEHHPSLLCSvhTFGKAA-GCHGAVVCGSRHLKSFLLNYGRPIIYSTSLPLHsLVSIACSYESMTSrIGDALRTTVGDRVRLFRKlfaeRIlgTASSssssssssslplkIRLVASDSPIHALIVPGNMQCVEFCDRLYEKSNRSIRLYpirSPTVPRGQERVRIILHSHNTEAQVI 443
                 5567789************999888887773336679**********************************************9765.77889*******************9998867899999999888765443111222222222356679*****************************************************9988777654339****7.579***************************9762555555555555414678999999999999962222332211111111111121211334578899999999999999*******99765555544222899**********998888887764 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   7.7e-05     0.063     120     181 ..     194     255 ..     132     277 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 7.7e-05
   TIGR01977 120 eeeglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvl 181
                 e+e + +v + +   ++++++iv+  +  + G   p+ +i  la +++ +++vD a  +Gvl
  MMETSP1061-20121228|8171_1 194 ENEEKEKVPRSALPPNTKPAVIVVESVYSMDGDAAPLGQILDLALRHNACVVVDEAHGLGVL 255
                 44444444444444567788999999999*******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2111.83
//
Query:       MMETSP1061-20121228|8181_1  [L=960]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-59  200.1   0.4      5e-30  102.2   0.0    2.8  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    7.3e-06   23.4   0.0    1.4e-05   22.5   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   0.0   2.5e-33     5e-30       6     175 ..     184     383 ..     179     390 .. 0.81
   2 !   94.4   0.1   5.9e-31   1.2e-27     183     424 ..     422     671 ..     408     680 .. 0.80

  Alignments for each domain:
  == domain 1    score: 102.2 bits;  conditional E-value: 2.5e-33
   TIGR01982   6 eiirvllrygllalvekivelsllllakllakvskeear.keslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpve.............................elFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllp 175
                 ++ir+l+ ++++    +  + +ll l  + ++++++ a+ +++++++l +a+ +lGP ++KlGQ+ls R+D+++++    L++Lq + +pfd + a +++ ++l+                                  lF++++ +P+A+AS++Qv+kA++++g + a+Kv+RP+  + ++ d++ ++ ++++ +++++
  MMETSP1061-20121228|8181_1 184 TVIRTLYTAQADWKAFRERKKQLLELGDKDESAKAIIAEeETAASAKLCAAVASLGPLAVKLGQTLSQRPDMVGKDACLALKRLQTQTAPFDNELAMEIVRESLEYWDGplaanldggdvndndndndndndstqkkkPLFKHLSPEPIASASLGQVYKATTWDGVDLALKVQRPDALSVLAIDTQCFRIASQVRNTFIE 383
                 556666665555544444444444444444444444444368899*******************************************************9976654434556777888888888888888899888878************************************************999998888774 PP

  == domain 2    score: 94.4 bits;  conditional E-value: 5.9e-31
   TIGR01982 183 tevvkefektlkeEldlrlEaanaselkenfkndkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilva.kdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgepivgkpl....ke.........isigklLaklf.kitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkk 424
                 + v++++++ +++Eld+r+Ea+na ++++ ++    +  Pev+  l + ++l ++++ g  ++ le  ++      a+++  ve   + ++  gf HaD+H+GN+l + +d ki++lDfG+++ ++++  +++a+ ++++l  d  +v e   ++g+++  + +++ ++++ +v  ++    l    ++          ++g+l + l  ki+ ++ + ++p +lLL++t+lt+EG++ q+dpd+++++++ p+v +
  MMETSP1061-20121228|8181_1 422 SSVIDRVTRDIQKELDYRVEASNAVKFRKSLEFLGFVDTPEVV--LITPKILATKFVLGDHLESLEPQQQL-----AMTRMAVEACTASMVLTGFVHADPHEGNLLFRyEDRKIVFLDFGLMSDVEQDIMEAFARGIQALLATDFGEVTEAFSDTGFITRPIMHRHNTAELWKVDPQYGHAELaadlEKhmtttegglTRFGALATVLNkKISPNWLVFTPPYVLLLIRTFLTLEGIAAQVDPDFNIYEMSLPWVVR 671
                 579999************************************8..6899**********998888877766.....55555566666666668***********998725689********************************************9987666666666666655544333311111111111111134554444443369999***************************************976 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   6.8e-09   1.4e-05      59     146 ..     458     548 ..     427     568 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 6.8e-09
   TIGR03724  59 vntPvvydvdpeekkivmeyiegkklkdlleekelellke.vGelvgklHkagivhgDlttsNiivk..ddklyliDfGLgkk..skevedka 146
                 v tP v+ ++p+  ++  + + g++l+ l  +++l ++++ v   ++ +  +g+vh D++  N++++  d+k++++DfGL +   ++ +e  a
  MMETSP1061-20121228|8181_1 458 VDTPEVVLITPK--ILATKFVLGDHLESLEPQQQLAMTRMaVEACTASMVLTGFVHADPHEGNLLFRyeDRKIVFLDFGLMSDveQDIMEAFA 548
                 89*********9..99**********9998887775555415566899****************9954499********97652233345555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (960 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.45
# Mc/sec: 2815.77
//
Query:       MMETSP1061-20121228|8182_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 2667.78
//
Query:       MMETSP1061-20121228|8180_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 2639.78
//
Query:       MMETSP1061-20121228|8178_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-20   70.9   0.1    3.7e-14   50.8   0.0    2.7  2  TIGR00071 hisT_truA: tRNA pseudouridine synthase A


Domain annotation for each model (and alignments):
>> TIGR00071  hisT_truA: tRNA pseudouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.4e-07     0.001       3      57 ..     243     301 ..     241     305 .. 0.80
   2 !   50.8   0.0   9.1e-18   3.7e-14      46     193 ..     353     543 ..     327     554 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.4e-07
   TIGR00071   3 ialkiaYdGsnyhGmqvqp...ekktvegelekaLeevgakkkkf.vmsagRTDkGVhA 57 
                 + l++aY+G+ + G+q q    ++++v+  le+ L e++++++     +a+  D+  hA
  MMETSP1061-20121228|8178_1 243 FFLRVAYNGNAFCGWQTQLknfDQPSVQRTLEEWLTELQNNDQTTqTLAAALADAEKHA 301
                 6789************986222579***************7777666888877776666 PP

  == domain 2    score: 50.8 bits;  conditional E-value: 9.1e-18
   TIGR00071  46 msagRTDkGVhAlgqvislkikke.iedkklvaklnall......pedirvkalekVnkkFdaRfsassrkYryiln.nkk.................yrsaldlekleaaakellGkh.dFsnFtkakdskeksairtikkikvse..................seeliilkiiGssFllhqvRkivaalv 193
                   agRTD+GV+A+gqv  + ++ + ++ +++  +l +++       ++  + +++kV+ +F++ fs  sr Y y++    +                  r + +++ l  + ++l Gk  d+   + +k  k+ ++i  +++++ +                   +++ ++++++G+ Fl+ +vR +v+a +
  MMETSP1061-20121228|8178_1 353 PVAGRTDRGVSAIGQVCRFRTHRKdLTVTAIHDYLADQIrttprmTDSLDITEIAKVSRSFHPTFSTCSRAYVYLIDvAAEresesernermtgfwnpNRVEQQVAFLDGMLQQLEGKAlDYVGVSYGK-VKTLDTICILHHARAKLvqyepsssslssegnqpaNRTAVCIELVGDRFLRRMVRLLVEASL 543
                 569*****************988735666666666655411111156666777***********************9633379************9985566666666666666666543666666655.5555555555544444444566667888899999999*********************8755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.43
# Mc/sec: 1853.99
//
Query:       MMETSP1061-20121228|8185_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0081   13.6   0.1      0.012   13.0   0.1    1.3  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD
  ------ inclusion threshold ------
      0.012   13.4   0.1      0.018   12.9   0.0    1.4  1  TIGR00586 mutt: mutator mutT protein


Domain annotation for each model (and alignments):
>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   5.7e-06     0.012      23      89 ..      68     138 ..      51     167 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.7e-06
   TIGR02705  23 epkhvlviprykdqwlltehkk...RGl.efPGGkv.eegetskeaaiRevleetGaivkeltylaqYeves 89 
                  p++ ++ +  + ++ll   ++   RG+ +  GGk  +e et ++ a Re+ eet  +v+ l+ +a+ +v  
  MMETSP1061-20121228|8185_1  68 TPNDNFISCVENTRILLGLKNRgfgRGYyNSFGGKFlNEEETVEACACRELEEETNLKVH-LHEMAKSKVGI 138
                 567777777777777776544333366434558887155566677799*******88774.55555555544 PP

>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0     9e-06     0.018      35      89 ..      98     156 ..      74     186 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 9e-06
   TIGR00586  35 efPGGkieaGetpeqavvrelqeevgitaqhfelfe.k..l.eyeypqkkltlyvylvr 89 
                  f G  ++  et e +  rel+ee  ++++  e+ + k  +  y + +  ++++++l r
  MMETSP1061-20121228|8185_1  98 SFGGKFLNEEETVEACACRELEEETNLKVHLHEMAKsKvgIqRYTFENDPVEMIMHLFR 156
                 4555558999**************99998766554312112246776666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1336.39
//
Query:       MMETSP1061-20121228|8183_1  [L=970]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.1e-65  217.2   0.0    1.1e-55  186.9   0.0    2.1  2  TIGR01057 topA_arch: DNA topoisomerase I
    5.3e-48  161.8   0.0    7.9e-48  161.2   0.0    1.1  1  TIGR01056 topB: DNA topoisomerase III
      6e-42  142.3   0.0      8e-40  135.2   0.0    2.1  1  TIGR01051 topA_bact: DNA topoisomerase I
    4.3e-29   98.5   0.0    3.4e-25   85.7   0.0    2.6  1  TIGR01054 rgy: reverse gyrase


Domain annotation for each model (and alignments):
>> TIGR01057  topA_arch: DNA topoisomerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.9   0.0   1.1e-58   1.1e-55       1     464 [.      59     558 ..      59     572 .. 0.82
   2 !   28.6   0.0   8.5e-11   8.7e-08     454     576 ..     570     694 ..     563     718 .. 0.83

  Alignments for each domain:
  == domain 1    score: 186.9 bits;  conditional E-value: 1.1e-58
   TIGR01057   1 iaekPkvakkiagalsear.vlkksedgv.....pyyelerdgkkii..vasavGhlfglaekes.geypvfd...leWvPifeadkgkeyvkkylkvlkklakgadeyivacdydieGeliGfkalkyacgvek..........akrmkfstltkkdirrayknleeidyglvdaGaarhildwlfGvnlsralmeaikkaag..rfvvlsaGrvqgPtlailverereikkfvPkpywvikillekgggvlkaesekekifeeeeaksilek.vkksksakveevrvkrsklkPpppfdlGtlqreayrvfglsPkktqeiaqelyeealisyPrtssqklPksinyrkilknlakkPlyreaaellkekgelkPveGkkedpahPaihptGeiPkeelskdekkvydlivrrflavfseeaireklkvkleike....ekfklsgkrvvkkGWlevy...kyskl....eek.....elPelkkgdkikvvkvkvekketkp 464
                 + ekP+ a+ ia+ l ++  +++k+ + v     p +    + kk++  v+s +Gh+f++   ++ + ++  d   l  +Pi             +  l++ akg+d  +   d d eGe i f++l+ +    k            r  fs++ + di++ay+ l + d +++ a  ar++ld   Gv  sr  ++  +   g     vls G  q+Pt+ ++v+r+ +i++f P+p+wv+++ + k g++l+a  e  + f++ +++ +++k +  + +a v++v ++++k+  p+p++   + +   +++g+ P+++++ a++ly+ ++ syPrt+s   Pks + +  l++ a   +++ +++ l+ +g+ k   G  +   hP i p+    + e+s d  +vy+l+vr f+a  s +a+  ++k+++ei+      kf l gk  v  G+l++    +y       ++      +lPe+kkg+ i++ k k +   +  
  MMETSP1061-20121228|8183_1  59 VGEKPSIAEAIAKGLCKGDrAFHKKVMPVhtfanPSFPKAPHAKKVVhkVTSVAGHVFSVDFPQEyQSWESVDpgeLFHAPIKRK----PCKGSVVSHLQNEAKGVDFIVLWMDCDREGENINFEVLDCCMHCMKggggvahydrVYRAYFSAINPSDILKAYNALGKPDKNQALAVDARQELDLKVGVAFSRFQTRFFQGRYGdlDSSVLSYGPCQTPTMGFVVQRHIDIETFTPEPFWVLELGILKRGRRLRALWESGRSFNKTKTEALVQKaLEANATAVVSNVVTRDKKQGRPVPLNTVAMLKACSKALGIGPHQALQCAERLYLSGYLSYPRTESTAYPKSFDIKGTLQQQAGDSRWGAYVKELLATGHNKSR-GGVDMGDHPPITPMRSASSYEMSGDMSRVYELVVRHFIASVSPDAVWRSTKINFEIEAlgdkGKFYLAGKELVSPGFLKILlhkEYGDDadkdDDDdeevcTLPEFKKGEVIQIFKTKSDSSSSAK 558
                 67*************986446777766662222266667889999987899********98666643344444222556666554....4444556778999***********************998774433333444445558899********************************************99998876655115689***************************************************99998888877662678889999**************************************************************************************99998876.5567788*******999999**************************999888777653223479**************9973333432111111112223469**********9999988776655 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 8.5e-11
   TIGR01057 454 kvkvekketkpParydkaslikelekrglGtkatraeiieklykrgyiegk..ksikvtplGekvietlkryvpeiiseeltrefekklediregkitkdevideakkrlrkileefkkrledig 576
                 +++v++k t +P   +++ li  +ek g+Gt+a     ie++ kr+y+  +  +++    lG  + +  ++    ++ +++  ++e + ++i +g ++k+ vi  a++  ++ +  f k+   + 
  MMETSP1061-20121228|8183_1 570 SLDVKEKMTTAPGYITESELIGMMEKHGIGTDASIPTHIENIQKRNYVRLEtgRRLIPNKLGLVLCQGYHQIDSGLVLPKVRADIEGQCNKISTGDLEKEVVIHRAIQMFEEKFHFFVKNIGRMD 694
                 57899******************************************9655114455567**********************************************9988877766666655555 PP

>> TIGR01056  topB: DNA topoisomerase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.2   0.0   7.7e-51   7.9e-48       6     594 ..      59     680 ..      54     694 .. 0.81

  Alignments for each domain:
  == domain 1    score: 161.2 bits;  conditional E-value: 7.7e-51
   TIGR01056   6 laEkPslardlakvlkkkkk..gnGylei...............gdgvvvtWalGHLvelaePeeYdekykkwrl.edlplvpeklklkvkkktkkqfnvikrll.kekevdevviAtDadREGeliareildklk........vrkkvrvkRlwlssltdkairkalkklrskseteslyksavaRaraDWlvGinltRaftll..greaGfd.gvlsvGRvqtPtLalvvkReeeienFvakkyyevkAtiakdeeeltaewqdykdeeerllhedlaervvkdlsqkp..avvtelkkerkkesaPllydLsaLqedaakrfglsAkevLdiaqkLYEkhkLitYPRtDsrylsedekeelkevlealkvkakallpvkkldekirnrlvndkkvedHhaiipteeslalsdLseeErkvYkliakrylaqflpkaeyeetkieleig....kelFeakgkvlqeaGw.kalldkkeedeEded.......ttlPalqkgdelavekleelekqtk......PPkrytegtLlsAmtnpaafvqdkgLkkvLketkGlGteAtRAdiiekLlkrkflekk.kkkifitkkGkallq...llpelltkPdltaeWEqvLseiaagklksddFikklkelvk 594
                 + EkPs+a ++ak l k  +   +  + +                + + vt   GH+     P+eY    ++w+  ++  l   + k k+ k       v+ +l  + k vd +v   D dREGe+i  e+ld +         v++  rv R ++s+++++ i ka + l   ++ + l ++  aR++ D  vG+  +R  t    gr    d +vls G  qtPt+++vv+R  +ie+F++ +++ ++  i k +++l+a w+      +r ++++ +e +v++  + +  avv ++  + kk+  P + +  a+ ++++k  g+  ++ L+ a +LY     + YPRt+s   +++    +k  l++  + ++    vk+l  + +n+      + dH  i p +  ++   +s +  +vY+l+ ++++a + p+a+++ tki++ei+    k++F   gk l+++G+ k ll k+  d+ d+d        tlP ++kg+++++ k++  +            + +    + + mt +  ++++ +L  ++ e +G+Gt+A     ie++ kr++++ + ++++   k G  l+q    ++  l  P++ a+ E + ++i+ g l++++ i++  ++ +
  MMETSP1061-20121228|8183_1  59 VGEKPSIAEAIAKGLCKGDRafHKKVMPVhtfanpsfpkaphakKVVHKVTSVAGHVFSVDFPQEY----QSWESvDPGELFHAPIKRKPCK-----GSVVSHLQnEAKGVDFIVLWMDCDREGENINFEVLDCCMhcmkggggVAHYDRVYRAYFSAINPSDILKAYNALGKPDKNQALAVD--ARQELDLKVGVAFSRFQTRFfqGRYGDLDsSVLSYGPCQTPTMGFVVQRHIDIETFTPEPFWVLELGILKRGRRLRALWES-----GRSFNKTKTEALVQKALEANatAVVSNVVTRDKKQGRPVPLNTVAMLKACSKALGIGPHQALQCAERLYLS-GYLSYPRTESTAYPKSF--DIKGTLQQQAGDSRWGAYVKELLATGHNKSRGGVDMGDHPPITPMRSASSYE-MSGDMSRVYELVVRHFIASVSPDAVWRSTKINFEIEalgdKGKFYLAGKELVSPGFlKILLHKEYGDDADKDddddeevCTLPEFKKGEVIQIFKTKSDSSSSAkvnvvaSAAVWGSLDVKEKMTTAPGYITESELIGMM-EKHGIGTDASIPTHIENIQKRNYVRLEtGRRLIPNKLGLVLCQgyhQIDSGLVLPKVRADIEGQCNKISTGDLEKEVVIHRAIQMFE 680
                 679999999999999888775556667668888889999998665666799999999999999875....6776404444555555444433.....2334333303458***********************9863322222244578***********************99999999876..79***************975337777766369***********************************************87.....99999999999998865544369***********************************************9.8889******9888764..456666666666666666677778888888888899********98888776.9**********************************6444489*************9555665543332221122334789*************877665544430111114555666667789*************9876.789*********************864389999********972225778899************************9999888765 PP

>> TIGR01051  topA_bact: DNA topoisomerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.2   0.0   7.8e-43     8e-40      22     573 ..     107     684 ..     102     694 .. 0.77

  Alignments for each domain:
  == domain 1    score: 135.2 bits;  conditional E-value: 7.8e-43
   TIGR01051  22 eveasvGHirdlpksasdvdekyar.lgvdvekdfepeyvvlkekkkvvkelkklakkadevylAtDeDREGEaiawHlaellkeklkv.........lkRivFnEitkkairealkkpreidlnlVeaqeaRrilDrlvGyklspllwkkva........kglSAGRVqSvalrliverEreikaFkpeeywdvdaklekkkeekfeakllevkgkklkaksdldlldeaeakalkeklkkeelaveeaeekekkskpkppfitstLqqeasrkLgfsakktmsiAqrLYEgvevkekkvglitYmRtDsvrlseeaveearkliekeygkeylaekpkr..ykkkeknaqeAHEairPtsvlltpeelkkelkkdelrLYeLiwkrtvAsqmadakleslsvrlaaekg..evkfkasgrklkfdGflkvykel.......kddekeekekeLpklkegdkvkl..........ke............vkseehetkppaRyteaslvkeLEelgiGRPStYasiisvildRgYvkle.kkalvptelgevvtdllekhfkelvdvdFtakmEkeLDeiaegkaewkevlkeFylgfeekve 573
                 +v++  GH+  +     d++++y+   +vd+ + f++  + ++ k +vv++l+++ak +d ++l  D DREGE i + +++   + +k          + R  F+ i ++ i +a ++  + d n+  a  aR+ lD  vG   s+   + ++        + lS G  q  ++ ++v+r  +i+ F pe +w ++  + k+ +   + + l ++g+ +++++       +ea   k+   +++++v++  ++ kk+  + p  t ++ ++ s+ Lg+  ++ ++ A rLY          g+++Y+Rt+s+   +++  +++++++++ g++  +   k+   + ++k+      + +P  +  + ++   e++ d  r+YeL+ ++++As   da  +s++++++ e    + kf+ +g++l  +Gflk++ ++       kdd+++e+  +Lp++k+g+ +++           +            ++++e++t  p   te+ l+ ++E++giG  +   + i+ i++R+Yv+le  ++l+p++lg v  +  ++  + lv  +  a +E +  +i +g  e++ v+++  + feek++
  MMETSP1061-20121228|8183_1 107 KVTSVAGHVFSV-----DFPQEYQSwESVDPGELFHAPIKRKPCKGSVVSHLQNEAKGVDFIVLWMDCDREGENINFEVLDCCMHCMKGgggvahydrVYRAYFSAINPSDILKAYNALGKPDKNQALAVDARQELDLKVGVAFSRFQTRFFQgrygdldsSVLSYGPCQTPTMGFVVQRHIDIETFTPEPFWVLELGILKRGR---RLRALWESGRSFNKTK-------TEALVQKALEANATAVVSNVVTRDKKQGRPVPLNTVAMLKACSKALGIGPHQALQCAERLYLS--------GYLSYPRTESTAYPKSF--DIKGTLQQQAGDSRWGAYVKEllATGHNKSRGGVDMGDHPPITP-MRSASSYEMSGDMSRVYELVVRHFIASVSPDAVWRSTKINFEIEALgdKGKFYLAGKELVSPGFLKILLHKeygddadKDDDDDEEVCTLPEFKKGEVIQIfktksdssssAKvnvvasaavwgsLDVKEKMTTAPGYITESELIGMMEKHGIGTDASIPTHIENIQKRNYVRLEtGRRLIPNKLGLVLCQGYHQIDSGLVLPKVRADIEGQCNKISTGDLEKEVVIHRAIQMFEEKFH 684
                 788999999533.....33344433147999999*********************************************987766555444556644467779*******************************************998876522222222569********************************97777444...4555666777776655.......44443333344556677777788888888899*****************************98........***********998876..46666666666554443332210222222223333344554332.333344569*************************9999888775433488****************98543111111134444477789*******988752222222222112222222222225678999*****************************************973589***********************************************9998888888776 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.0   3.3e-28   3.4e-25     707    1164 ..     148     674 ..     139     682 .. 0.73

  Alignments for each domain:
  == domain 1    score: 85.7 bits;  conditional E-value: 3.3e-28
   TIGR01054  707 eiieilReladevdevliatDpDteGekigyDlalalrpynr.........nikRveFhevtkrailealeslrsldenlvkaqvvRRieDRWiGFrlsqklwekFn.......kkylsaGRvqtPvLGWiieRyk..............eykekkksllllklendislkkiledeleakelkkdekevevkvveekeeekpPlPPyttdtlLedankrlglsakeimkiaqeLFelGlitYhRtdstRvsd....dG..mrvake.....ylkkrlleellkpRewgegGaheciRPtrPldtddleellkegviklektrnhlkvYdliFrRFiasqmkeak...........................................veveeitlka.gleekeegvveikeegfslvyplklkke.....rriekseslkvldkelrkvpkvyly.tegeivklmkerGiGRPstYakivekllergYvveskdnkliptklGievyeyLinlkypklvseertReLeeamdkiekGevdylevLke 1164
                  +++  l + a+ vd +++  D D+eGe i +++      + +          ++R+ F  + +  il+a + l + d+n+  a   R   D  +G  +s+   + F+        + ls G  qtP++G++++R+               +   k++  l    e++ s +k   + l +k l+ +  ++ v++v+ +++++  + P  t  +L+  +k lg++ +++++ a  L+ +G++ Y Rt+st   +    +G  ++ a +     y+k+ l+    k+R     G h  i P+r            + + ++++     +vY+l+ r Fias   +a+                                                   k+   +e++ +  e k+    +++++k  ++     + +    ++  ld++++ +  ++ y te+e++ +m ++GiG  +   + +e++ +r+Yv  + +++lip klG  + +   +   + lv      ++e + +ki  G+++++ v++ 
  MMETSP1061-20121228|8183_1  148 SVVSHLQNEAKGVDFIVLWMDCDREGENINFEVLDCCMHCMKggggvahydRVYRAYFSAINPSDILKAYNALGKPDKNQALAVDARQELDLKVGVAFSRFQTRFFQgrygdldSSVLSYGPCQTPTMGFVVQRHIdietftpepfwvleLGILKRGRRLRALWESGRSFNKTKTEALVQKALEAN-ATAVVSNVVTRDKKQGRPVPLNTVAMLKACSKALGIGPHQALQCAERLYLSGYLSYPRTESTAYPKsfdiKGtlQQQAGDsrwgaYVKELLATGHNKSRGGVDMGDHPPITPMR-----------SASSYEMSG--DMSRVYELVVRHFIASVSPDAVwrstkinfeiealgdkgkfylagkelvspgflkillhkeygddA------DKDdDDDEEVCTLPEFKKGEVIQIFKTKSDSSssakvNVVASAAVWGSLDVKEK-MTTAPGYiTESELIGMMEKHGIGTDASIPTHIENIQKRNYVRLETGRRLIPNKLGLVLCQGYHQID-SGLVLPKVRADIEGQCNKISTGDLEKEVVIHR 674 
                  789999999**********************998665544321222222227************************************************9999999888888788899***************5533333344444442233344444555555556666555555444444444.45668888899998888889999***************************************8643111133222223212222266666666666666666666666555555...........445555666..6779****************99*****************************999985443222220......222133333333445555555555554443330100023444556666777766.555555549********************************999999********98877666533.67888888899999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (970 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.64u 0.18s 00:00:00.82 Elapsed: 00:00:00.62
# Mc/sec: 2064.99
//
Query:       MMETSP1061-20121228|8198_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.10s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 839.93
//
Query:       MMETSP1061-20121228|8194_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-15   54.0   0.0    6.2e-15   53.4   0.0    1.2  1  TIGR02466 TIGR02466: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02466  TIGR02466: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0   1.5e-18   6.2e-15      97     198 ..     179     296 ..     169     298 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 1.5e-18
   TIGR02466  97 klWvvilp.qggvheaHvHpgsviSgvyYvqtpenasaikledprldslmaapk.akknakra....verfvkvkPqegrvllfeswLrHeVtpneseee..........RisvSfnl 198
                 ++W  +   +g+ h  HvH g+++SgvyY  +p +++ + l  p++ + +   + + ++ ++a    + + v ++P eg+++lf+ w  H V+  e +ee          R+s  fn 
  MMETSP1061-20121228|8194_1 179 DMWAAVQRgKGAYHADHVHEGALVSGVYYASVPAGSAPLVLRRPKASENIRTDQeLSHQTHEAinddRVGDVIIPPTEGNLILFPPWVEHGVPLAEEQEEsvdnsfihlpRVSFAFNV 296
                 599999877********************************9998877665443133333333111134567889********************99999788888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1652.50
//
Query:       MMETSP1061-20121228|8193_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 436.93
//
Query:       MMETSP1061-20121228|8199_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-14   49.8   0.0    1.3e-09   35.8   0.0    3.6  4  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    0.00027   18.3   0.0     0.0057   14.0   0.0    2.7  3  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
  ------ inclusion threshold ------
      0.037   11.6   0.0      0.094   10.3   0.0    1.6  1  TIGR03690 20S_bact_beta: proteasome, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00023      0.31       3      39 ..      79     115 ..      76     119 .. 0.90
   2 ?   -0.5   0.0      0.12   1.7e+02      41      69 ..     151     179 ..     142     196 .. 0.76
   3 ?   -0.5   0.0      0.12   1.7e+02      70     108 ..     224     264 ..     205     273 .. 0.76
   4 !   35.8   0.0   9.5e-13   1.3e-09     109     162 ..     358     411 ..     320     421 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00023
   TIGR03634   3 TtvGikvkdgvvlAadkraslgnlvasknvkKvfkid 39 
                 T vGi+ kd v+l ad+ +s    ++  n +K+  + 
  MMETSP1061-20121228|8199_1  79 TLVGIVGKDFVLLGADSSVSQSISLTASNLDKIAPLV 115
                 89********************999999999998765 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.12
   TIGR03634  41 kialtiaGsvgdaqslvrllkaeaklyel 69 
                  i  + aG  +d   l+++lka  ++ e 
  MMETSP1061-20121228|8199_1 151 AIIAAAAGDAADSDRLLSYLKAIGSVEEY 179
                 55667888888888888888876665554 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.12
   TIGR03634  70 rrkkkisvkalatllsnllkss..kflpflvqllvgGvdee 108
                 +++  + v+++a+l+   + ++    +p+ + ll++G+  e
  MMETSP1061-20121228|8199_1 224 NNGGGLDVRSMAHLARRCIWEKmrSRTPYRICLLIAGMMLE 264
                 5666677888999988877554335679********98754 PP

  == domain 4    score: 35.8 bits;  conditional E-value: 9.5e-13
   TIGR03634 109 gpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaik 162
                  p+ly lD  Gs+ + +y a G Gs++ l++L+++Y++dl+ eea++l  +  +
  MMETSP1061-20121228|8199_1 358 RPRLYWLDEYGSLQKIQYGAHGHGSNFLLSILDQSYRPDLTREEAIQLMNECFQ 411
                 599********************************************9987665 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0     0.067        92      30      63 ..      78     112 ..      67     118 .. 0.80
   2 ?   -1.8   0.1      0.27   3.6e+02      67      94 ..     150     177 ..     146     183 .. 0.79
   3 !   14.0   0.0   4.2e-06    0.0057     139     196 ..     357     414 ..     351     436 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.067
   TIGR03633  30 ttavGiktkegvvlivdkritskl.leaesiekif 63 
                  t vGi  k+ v+l +d  + +++ l+a++++ki 
  MMETSP1061-20121228|8199_1  78 ETLVGIVGKDFVLLGADSSVSQSIsLTASNLDKIA 112
                 5789*************999877647888899986 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.27
   TIGR03633  67 dhvgaataGlvaDarvlidrarveaqvn 94 
                 + ++aa+aG +aD+  l+ + +    v+
  MMETSP1061-20121228|8199_1 150 QAIIAAAAGDAADSDRLLSYLKAIGSVE 177
                 56899*********99998877666555 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 4.2e-06
   TIGR03633 139 kearlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakal 196
                  ++rl+  d  G l + +  a G+g++ +l++l+++y+ dl+ +eai+l  + +++  
  MMETSP1061-20121228|8199_1 357 YRPRLYWLDEYGSLQKIQYGAHGHGSNFLLSILDQSYRPDLTREEAIQLMNECFQELR 414
                 579**********************************************877776655 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.9e-05     0.094     129     169 ..     368     408 ..     357     415 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.9e-05
   TIGR03690 129 gkeeeeeyesvGsGsvfakgalkklykedlseedavrvave 169
                 g+ ++ +y + G Gs f  + l + y++dl++e+a+++  e
  MMETSP1061-20121228|8199_1 368 GSLQKIQYGAHGHGSNFLLSILDQSYRPDLTREEAIQLMNE 408
                 466799******************************98655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2204.71
//
Query:       MMETSP1061-20121228|8190_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     6e-128  424.7   0.0   6.7e-128  424.5   0.0    1.0  1  TIGR00339 sopT: sulfate adenylyltransferase


Domain annotation for each model (and alignments):
>> TIGR00339  sopT: sulfate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.5   0.0  1.6e-131  6.7e-128       1     383 []      35     409 ..      35     409 .. 0.97

  Alignments for each domain:
  == domain 1    score: 424.5 bits;  conditional E-value: 1.6e-131
   TIGR00339   1 PhG.gklkelvvkdpeeeekllaeaeslksielskrslrdvelllvGafsPleGfmneadyesvveemrLsdgvlfslpilLdideedakdikegdrvllvdkkgqplailtieevykpdkekeakkvygttdpehpavkklk.sagevyigGklevinlpkfedfpefrltpaevReeikeegwdkvvAfQtRNpvHraHeeLtkraaer..d.knagvlvhplvGltkkgDipaevrlrayevlkekyldpervvltllplaMryagprEallHaiiRkNyGathfivGRdhagvgkslkgqdlysayeaqelvekakaelglkivpfeevlyleeedeiatadeakaekekllnisgtklRemlregekpPeefsrpevvkvLve 383
                 PhG g l++l+vk  e +e+++a+a+   +++ ++r+l+dvel+++G f+P++Gfm ea y+svv++m L dg++f+lp+++d+d+ed +   +g+++ll +  +  +a+++  + ykp+k+ke+k++ygt++ ehp+  +++ ++g++y+gGk++ +nlp  +dfp+   tpaevR e+ +   ++vvAfQ+RNpvHraH+eL++ra++     +++ vlvhp++G t+++Dip  vr ++yevlke++++  rv++ +lp++M++agprEa++H++iRkN G+thfi+GRd+ag ++s+ g+d+y+ay+aq+++ + +++lg++ vp+ +++y+eee+ ++tadeak++   l ++sgtk+R+mlr ge++Pe+f++++vv+vL+e
  MMETSP1061-20121228|8190_1  35 PHGgGDLVDLIVKSDEDKEAAIAKATV--TLQATERQLCDVELIMNGGFTPITGFMDEATYDSVVDNMALPDGTVFGLPVVFDTDDEDLE---PGTTILLKQG-DLAIATVELTDKYKPNKVKETKECYGTSELEHPGTLMVAtERGKYYMGGKVTGLNLPV-RDFPCK--TPAEVRAELPDD--KDVVAFQCRNPVHRAHYELFTRALDDplVgEGGIVLVHPTCGPTQADDIPGVVRYKTYEVLKEETKND-RVFWEYLPYSMHMAGPREAIQHMMIRKNFGCTHFIIGRDMAGSKSSITGEDYYGAYDAQDIARANNEKLGVTPVPSLNLVYTEEEG-YVTADEAKEKDLSLKKLSGTKFRQMLRGGEDIPEWFAFKSVVEVLRE 409
                 89879*********9999999999998..89999****************************************************9876...*******999.999************************************9******************.****98..***********9..9*************************85269999*******************************999.***********************************************************************************999.*********************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 2169.90
//
Query:       MMETSP1061-20121228|8203_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|8201_1  [L=1312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.39
# Mc/sec: 4440.25
//
Query:       MMETSP1061-20121228|8200_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2403.11
//
Query:       MMETSP1061-20121228|8202_1  [L=854]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       465  (0.113359); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 3220.53
//
Query:       MMETSP1061-20121228|8205_1  [L=1472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-08   30.5   0.0    1.2e-07   29.1   0.0    1.6  2  TIGR00417 speE: spermidine synthase


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.9e-11   1.2e-07      59     161 ..     569     675 ..     554     743 .. 0.79
   2 ?   -2.8   0.0      0.15   6.3e+02     178     226 ..    1189    1238 ..    1176    1248 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.9e-11
   TIGR00417  59 heliahvpllahenpkkvlviGGGDGgvlrevvkhk.sveeitlveiDekvielskkylpklsgalddervdlkidDGvkflrdt....ekkfDviivDstdPvGpae 161
                  e +ah +    ++ kkv++iGG DG  l e++k++ + e++t+ e D++  + s k++ ++   ldd+rvd    D    lr         fD ++v  +d v  ++
  MMETSP1061-20121228|8205_1 569 YEYVAHAAARYLQQVKKVAIIGGSDGMLLHEIMKYNdTLEHVTILEPDQTLARKSAKHFATD-LYLDDDRVDWWFGDVALSLRALdesyYGSFDLVLVHLPDRVLSGK 675
                 488999999999**********************86379**************999998765.689*********999988887722223467888888887766555 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.15
   TIGR00417  178 edGvivaqseslllqlelik.dlkrkvkevfekvelylaaiPtypsglls 226 
                  e G++++q+ +  ++ e ++  l++k+++  +++e   + + t  +gl  
  MMETSP1061-20121228|8205_1 1189 ELGIVSTQNSNANYEFEALEtRLEQKLNDDTKTTEKASVRLRTIHGGLYQ 1238
                  57999999999999988875257888888888888888888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.13s 00:00:00.73 Elapsed: 00:00:00.63
# Mc/sec: 3083.94
//
Query:       MMETSP1061-20121228|8208_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 2424.69
//
Query:       MMETSP1061-20121228|8211_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|8210_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 2726.08
//
Query:       MMETSP1061-20121228|8209_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.6e-140  464.2   1.0     8e-140  463.9   0.7    1.1  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    4.7e-80  267.6   0.2    7.4e-80  267.0   0.1    1.2  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    3.3e-77  258.1   0.2    4.7e-77  257.6   0.1    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    4.6e-59  198.3   0.9    6.4e-59  197.8   0.6    1.1  1  TIGR03689 pup_AAA: proteasome ATPase
    1.6e-05   21.8   1.1    0.00035   17.4   0.0    2.5  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    4.3e-05   20.1   0.0    6.1e-05   19.6   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    0.00019   18.3   0.2       0.17    8.6   0.0    2.4  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    0.00024   18.1   0.0    0.00052   17.0   0.0    1.6  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0014   15.6   0.0     0.0022   14.9   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
     0.0024   14.2   0.0     0.0043   13.4   0.0    1.3  1  TIGR00763 lon: ATP-dependent protease La
     0.0038   14.1   0.0      0.006   13.5   0.0    1.3  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0047   13.4   0.0     0.0079   12.6   0.0    1.3  1  TIGR00764 lon_rel: putative ATP-dependent protease
  ------ inclusion threshold ------
      0.054   11.3   0.8       0.14    9.9   0.0    2.0  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  463.9   0.7  2.5e-142    8e-140      27     363 ..     175     511 ..     141     512 .. 0.94

  Alignments for each domain:
  == domain 1    score: 463.9 bits;  conditional E-value: 2.5e-142
   TIGR01242  27 reverlrselerlrsppllvavvvevlddervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                    +  r++le lr  pl v+++ e++dd++++v ss Gp++ vn+ + ++++ l+pG  v l+++t+++v +l ++ dp+v  ++ve+ p  sy diGGle+q++ei+eavelpl +pel+e++Gi+ppkGv+lyG pGtGktllakava++t atf+rvvgsel++ky+G+G +lvre+f++a + +p+i+fideida+++kr dss++G re+qrt+l+ll +ldGfd rg+vkvi atnr++ ldpal+rpGr+dr ie plpd + +++i++iht+km laedvdle++ +  +  sGad+ka++teaGm a+re+r kv +edf ka ek 
  MMETSP1061-20121228|8209_1 175 ERDQEEREKLEELRGSPLGVGTLEELIDDNHAIVSSSVGPEYYVNILSSVNQDLLEPGCSVLLHNKTMSVVGILQDDTDPMVSVMKVEKAPLESYADIGGLEDQIQEIKEAVELPLAHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANHTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPTIVFIDEIDAVGSKRYDSSSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNRIESLDPALIRPGRIDRKIEFPLPDTKTKRHIFNIHTNKMTLAEDVDLEKFIQSRDELSGADIKAVCTEAGMLALRERRMKVCQEDFDKAKEKA 511
                 223456889************************************************************************************************************************************************************************************************************************************************************************************************************************************9995 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.0   0.1   2.3e-82   7.4e-80     448     691 ..     265     510 ..     248     518 .. 0.92

  Alignments for each domain:
  == domain 1    score: 267.0 bits;  conditional E-value: 2.3e-82
   TIGR01243 448 pnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadls..eavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeeke 691
                 p   + diggle+  qe++eave pl ++e++e +gi+ppkgv+l+g pgtgktllakava+ + a f+ v g e++ k++g+  k +re+fr a + +p+i+f+deida+  +r  + s  ++  +r + +ll +ldg++e  dv vi atnr + ldpal+rpgr+dr i  p pd +++ +if iht++++laedvdle++ +  +  +gadi+av+ ea ++alre  + v++e +++ +++
  MMETSP1061-20121228|8209_1 265 PLESYADIGGLEDQIQEIKEAVELPLAHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANHTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPTIVFIDEIDAVGSKRYDSSSggTREIQRTMLELLNQLDGFDERGDVKVIMATNRIESLDPALIRPGRIDRKIEFPLPDTKTKRHIFNIHTNKMTLAEDVDLEKFIQSRDELSGADIKAVCTEAGMLALRERRMKVCQEDFDKAKEK 510
                 556789************************************************************************************************************987655115577899999**************************************************************************************************9999999999877554 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.6   0.1   1.5e-79   4.7e-77      52     298 ..     266     513 ..     251     519 .. 0.97

  Alignments for each domain:
  == domain 1    score: 257.6 bits;  conditional E-value: 1.5e-79
   TIGR01241  52 kvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrvia 298
                   +++d+ G++++ +e++e v+  L +p+ ++++G k PkGv+l+G+PGtGktLlakava   +  f+++ Gs++++ + G G + vr+lf  a   +P+i+fiDeiDavG+kr  + +gg  e ++t+  lL ++DGf+++ +v v+ atnr + LD+aL+rPGr Dr++   +Pd k +++i+++h++k++lae+vdl+k  ++   +sGad++ ++ ea +la r+++ +v ++++++a+++ ++
  MMETSP1061-20121228|8209_1 266 LESYADIGGLEDQIQEIKEAVELpLAHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANHTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPTIVFIDEIDAVGSKRYDSSSGGTREIQRTMLELLNQLDGFDERGDVKVIMATNRIESLDPALIRPGRIDRKIEFPLPDTKTKRHIFNIHTNKMTLAEDVDLEKFIQSRDELSGADIKAVCTEAGMLALRERRMKVCQEDFDKAKEKALY 513
                 45799*****************879****************************************************************************************************************************************************************************************************************************886 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   0.6     2e-61   6.4e-59     109     405 ..     194     482 ..     164     516 .. 0.84

  Alignments for each domain:
  == domain 1    score: 197.8 bits;  conditional E-value: 2e-61
   TIGR03689 109 ivtlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavpkse...veelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtr...GsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPl.eedlaeadgdreaavealiek 405
                 + tl+e++dd++a+v++ ++ e+ v++ +++ +  l++G s+l+ +k+   +  ++      v+ + +e +P  +yadiGGl++qi++i++avelP+ h+ely++ ++kpPkGv+lyG PG+Gktl+akavan           +++ fl + G el++ky+G+  + +r +f      a + +P +vf+de+d++   r    sG + +++ t++  ll +ldG ++  +v vi a+nr + +dPa++rPGr+d ki    Pd+++ ++i++ + ++     + dl ++  +r++   a i+ 
  MMETSP1061-20121228|8209_1 194 VGTLEELIDDNHAIVSSSVGPEYYVNILSSVNQDLLEPGCSVLLHNKTMSVVGILQDDTdpmVSVMKVEKAPLESYADIGGLEDQIQEIKEAVELPLAHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANH----------TSATFLRVVGSELIQKYLGDGPKLVRELFR----VADDLSPTIVFIDEIDAVGSKRydsSSGGTREIQRTML-ELLNQLDGFDERGDVKVIMATNRIESLDPALIRPGRIDRKIEFPLPDTKTKRHIFNIHTNKMTLAeDVDLEKFIQSRDELSGADIKA 482
                 679******************************************99987777665543222566779****************************************************************94..........5679*************************5....678999************98884445677788888876.79******************************************************9976543333556766665555544443333 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   1.1e-06   0.00035      38      65 ..     302     329 ..     268     336 .. 0.80
   2 ?    2.0   0.6     0.052        16     132     275 ..     366     511 ..     349     519 .. 0.57

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 1.1e-06
   TIGR02928  38 srpsnvliyGktGtGKtavtkkvlkele 65 
                 + p+ v++yG++GtGKt+ +k+v ++ +
  MMETSP1061-20121228|8209_1 302 KPPKGVILYGEPGTGKTLLAKAVANHTS 329
                 57899******************98765 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.052
   TIGR02928 132 iivLDEiDklvkkeade..........lLyeLsraeengdlekakvsvigisndlkfleeldervksslseeeivFppYdaeeLrdILeeRa.ekafkdgvlddeviplvaalaaqehGdaRkAidlLreageiAeeegsekvteehvekAqeki 275
                 i+ +DEiD + +k  d+          ++ eL+    +g  e   v vi  +n +++l+   + ++   ++++i+Fp  d++  r+I +  + ++ + ++v  ++ i+   +l+  +     kA+    eag +A +e + kv +e+ +kA+ek+
  MMETSP1061-20121228|8209_1 366 IVFIDEIDAVGSKRYDSssggtreiqrTMLELLNQL-DGFDERGDVKVIMATNRIESLDP--ALIRPGRIDRKIEFPLPDTKTKRHIFNIHTnKMTLAEDVDLEKFIQSRDELSGAD----IKAV--CTEAGMLALRERRMKVCQEDFDKAKEKA 511
                 445577777653333334666666666444444332.22223355666666666544332..2355555666666666666666666654443455566666666665555555444....3443..4589999999999999999999999886 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.9e-07   6.1e-05     284     407 ..     275     395 ..     257     443 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.9e-07
   TIGR03922 284 vkeqvaalkssvevalvRaerGlavaqr.skHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvekrdgakddfGleaidtLL 407
                   +q++ +k++ve+ l+  e    +  +  k ++l G PGtGkt +A++va+  +        +   v  ++li +y+g+  +   el   a +    ++F+DE+ a+ +kr++++     e+  t+L
  MMETSP1061-20121228|8209_1 275 LEDQIQEIKEAVELPLAHPELYEDIGIKpPKGVILYGEPGTGKTLLAKAVANHTS-------ATFLRVVGSELIQKYLGDGPKLVRELFRVADDlspTIVFIDEIDAVGSKRYDSSSGGTREIQRTML 395
                 5667888888888888777665555444157899******************865.......345568899************9999987765533489*********99988766543333333333 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0    0.0012      0.38      47      83 ..     304     340 ..     294     363 .. 0.84
   2 !    8.6   0.0   0.00055      0.17     249     283 ..     365     398 ..     357     412 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0012
   TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikveatkf 83 
                 Pk +++ G  G Gkt +a+ +a  + a f++v  +  
  MMETSP1061-20121228|8209_1 304 PKGVILYGEPGTGKTLLAKAVANHTSATFLRVVGSEL 340
                 9******************************977655 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00055
   TIGR00390 249 GiifideidkiakkgessgadvsreGvqrdllPiv 283
                  i+fideid +  k   s++  +re +qr +l ++
  MMETSP1061-20121228|8209_1 365 TIVFIDEIDAVGSKRYDSSSGGTRE-IQRTMLELL 398
                 69************98888888998.999999876 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.6e-06   0.00052      32      94 ..     306     376 ..     280     381 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.6e-06
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvk.lkitsgpalekp.gDlaailtal...eeg...dvlfiDeihrls 94 
                  v+lyG PG Gkt lak +a+   ++ l+++ +  ++k  gD   ++ +l    +     ++fiDei ++ 
  MMETSP1061-20121228|8209_1 306 GVILYGEPGTGKTLLAKAVANHTSATfLRVVGSELIQKYlGDGPKLVRELfrvADDlspTIVFIDEIDAVG 376
                 589*****************988754289999999998535655555444111221222699****98875 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0     7e-06    0.0022     120     202 ..     307     383 ..     294     399 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7e-06
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksenas 202
                 ++l G  G+Gktlla+++a++    f     + l +  y+G+    ++ +l+++ad d       i++ideid +  k  ++s
  MMETSP1061-20121228|8209_1 307 VILYGEPGTGKTLLAKAVANHTSATFLRVVGSELIQ-KYLGD-GPKLVRELFRVAD-D---LSPTIVFIDEIDAVGSKRYDSS 383
                 678999*******************99888888876.69995.6789999999998.3...4567**********87765544 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.4e-05    0.0043     356     434 ..     307     377 ..     299     402 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-05
   TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvk.tenP.lillDEiDKlgs 434
                 ++l+G PG GKt lak++A+ +  +f+r+ +G     +e+    + Y+G  P k++  l +v    +P ++++DEiD +gs
  MMETSP1061-20121228|8209_1 307 VILYGEPGTGKTLLAKAVANHTSATFLRV-VG-----SEL---IQKYLGDGP-KLVRELFRVAdDLSPtIVFIDEIDAVGS 377
                 579*************************8.44.....343...256899888.7777776654145663567899998884 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.9e-05     0.006      45     154 ..     307     420 ..     264     469 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.9e-05
   TIGR02881  45 mifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikka...lGGvlfidea.......yslarGGekdfGkeaidtlvk.emedkreelvlilaGysde 154
                 +i+ G+PGtGkt +a+ +a+            ++ v  ++l+ +y+G+  + +re+ + a   +  ++fide        y  + GG ++  +  ++ l + +  d+r ++ +i+a  + e
  MMETSP1061-20121228|8209_1 307 VILYGEPGTGKTLLAKAVANHT-------SATFLRVVGSELIQKYLGDGPKLVRELFRVAddlSPTIVFIDEIdavgskrYDSSSGGTREIQRTMLELLNQlDGFDERGDVKVIMATNRIE 420
                 6889************999854.......45678888999****************9988333468*****96333333466677888888887777665523347778888888765554 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.5e-05    0.0079      38      60 ..     305     327 ..     291     336 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.5e-05
   TIGR00764  38 rnvlliGePGvGksmlakamael 60 
                 + v+l GePG+Gk++laka+a+ 
  MMETSP1061-20121228|8209_1 305 KGVILYGEPGTGKTLLAKAVANH 327
                 679*****************975 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00046      0.14       3      27 ..     307     331 ..     306     343 .. 0.86
   2 ?   -1.4   0.1       1.4   4.4e+02      28      63 ..     474     510 ..     454     519 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00046
   TIGR02173   3 ivisGpPGsGkttvakilaeklslk 27 
                 +++ G+PG+Gkt +ak +a++ s  
  MMETSP1061-20121228|8209_1 307 VILYGEPGTGKTLLAKAVANHTSAT 331
                 6788****************98865 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1.4
   TIGR02173  28 lisaGkirelaekkgl.dlaeskkaeeekeiDkkiDr 63 
                  +s+ +i+ +  + g+  l e +++  +++ Dk  ++
  MMETSP1061-20121228|8209_1 474 ELSGADIKAVCTEAGMlALRERRMKVCQEDFDKAKEK 510
                 5788899999999886468888888888899887555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        51  (0.012433); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.33
# Mc/sec: 2099.83
//
Query:       MMETSP1061-20121228|8212_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.073   10.5   4.5       0.92    6.8   0.2    2.2  2  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.4   0.00083       3.4       3      43 ..     162     202 ..     160     213 .. 0.75
   2 ?    6.8   0.2   0.00023      0.92      45      97 ..     285     336 ..     279     338 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00083
   TIGR03593   3 rlilavaLsfvilllwqawqkdpkpepqkppaaaqqaesqs 43 
                 +++ a++L++v+ ++ + + +++++ ++++++ +qq+++q 
  MMETSP1061-20121228|8212_1 162 KFFAAMVLVVVLGIVTEGLGRWKHEVAKQQQQLQQQQQQQL 202
                 689999***********999998888777777776666643 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00023
   TIGR03593  45 aaaaaasaaaaasadapsaaaaaaaaaaakritvktdvlrlsidtkGgdidsl 97 
                 ++++++++++++s+++p+++++++a+++ +r++++  +l  ++  +Gg+++ +
  MMETSP1061-20121228|8212_1 285 SQSQSQPPSPSPSQTQPDSDSDSDAYTN-RRVSLTERLLPRTVEPNGGTLVGA 336
                 1335677777888888888888888887.9*******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 2203.64
//
Query:       MMETSP1061-20121228|8216_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 601.28
//
Query:       MMETSP1061-20121228|8218_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   15.0   0.0     0.0035   14.6   0.0    1.2  1  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   8.6e-07    0.0035      57     125 ..     151     220 ..      98     228 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 8.6e-07
   TIGR03896  57 eLsrGelvGemslleerppvatikaveksr.llsipveeLaaklqsdvalaaslYrviaeklalqiqnqn 125
                  + rG ++Ge  l++  p ++t+k   k   l s+ ++ ++  ++ +  la ++  +  + lal++q+  
  MMETSP1061-20121228|8218_1 151 VIPRGCIIGELGLVNGNPRMSTVKCSSKHAiLYSMSRSSFEKLIATQPHLARHIDLICVKYLALRVQHVS 220
                 3457778888888888888888887665441457778888888888888888887777778888887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.37
# Mc/sec: 827.61
//
Query:       MMETSP1061-20121228|8221_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 781.38
//
Query:       MMETSP1061-20121228|8223_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-16   56.8   0.0    5.7e-16   56.3   0.0    1.2  1  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
      2e-06   25.2   0.0    3.8e-06   24.3   0.0    1.4  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
    2.4e-05   22.1   0.0    0.00047   17.9   0.0    2.2  2  TIGR00249 sixA: phosphohistidine phosphatase SixA
    9.4e-05   19.7   0.0    0.00017   18.9   0.0    1.4  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.0   5.6e-19   5.7e-16       1     176 []     149     346 ..     149     346 .. 0.89

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 5.6e-19
   TIGR03162   1 lyLiRHgevevnkgkcY.G.qtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrelAella...........eklklpiekddrLrEmdfGdw.Egksydeisekyp.eldawakdlaharvp.gGEsvadfsqRveefleelake....ekenvlivtHgGvirallahllglpleqllsieveygsitli 176
                 +yL RHg++e n+ +   G + D p++ +g++qa +l  +l  +d+k +  +sS l R++ +A++ a           + ++l  ++ + L E+dfG+  +g++ + ++ek    +++w    +++r+  gG s +++ +R  e++++l++e    + + v+ v+H+  +r+l+  +l+ pl q    ++++gs+t+i
  MMETSP1061-20121228|8223_1 149 IYLCRHGQTENNRLRIVqGaRVDPPININGKNQATNLGLALarADPKPELFFSSSLLRAKMTADIAAnandgasevetSGNRLVPRELQVLSEVDFGSVaDGQPISVVQEKMTkTYSKWSMGDVDYRPEgGGDSGREVLNRACEAIQTLVNEakaaDVRCVAAVSHSAYLRVLIGMVLNEPLLQSSIRKIRNGSVTVI 346
                 79********999888886378***************9999777889999***************9999999988876555666688999*******9759***********9******99888888872579*************99988764445678999********************************987 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.7e-09   3.8e-06       3     185 ..     150     347 ..     148     356 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.7e-09
   TIGR03848   3 llvrhgrstantaktLaGrtpGveLderGreqaaalaerladl..piaaivssPlercretveaiaear...........glevavderltevdYGdW.tGrelkeLakeeLwkvvqahpsaav.f.Pg..GealaevqaravaavreldarleeehgpdavwvavshgDviksvladalGlhlDlfqrievdPasvsvvr 185
                  l rhg++ +n  +++ G      ++ +G++qa++l   la    + +   ss l r++ t++  a+a+            l ++  + l+evd+G+  +G++++ +++e++ k+  + + + v + P+  G++ +ev  ra +a+++l ++   +  +     avsh+  ++ ++   l   l +    ++   sv+v+ 
  MMETSP1061-20121228|8223_1 150 YLCRHGQTENNRLRIVQGARVDPPININGKNQATNLGLALARAdpKPELFFSSSLLRAKMTADIAANANdgasevetsgnRLVPRELQVLSEVDFGSVaDGQPIS-VVQEKMTKTYSKWSMGDVdYrPEggGDSGREVLNRACEAIQTLVNEA--KAADVRCVAAVSHSAYLRVLIGMVLNEPLLQSSIRKIRNGSVTVID 347
                 689****99**********99999************9999866214567899************999988877776653333344556799*****972577775.67899999998888776533465558999************987773..44566677899****9999998888777666666667777777776 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.5e-07   0.00047       2      75 ..     148     227 ..     147     240 .. 0.88
   2 ?    1.8   0.0      0.04        41      87     114 ..     294     321 ..     288     346 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.5e-07
   TIGR00249   2 elylmrHGeAkekaa..sDkeR...qLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeivadald.esklevl 75 
                 ++yl rHG+ +++    + ++R   ++  +Gk++a+ ++  L +a  + ++ + S l+RA+ ta+i a+a d +s++e+ 
  MMETSP1061-20121228|8223_1 148 RIYLCRHGQTENNRLriVQGARvdpPININGKNQATNLGLALARADPKPELFFSSSLLRAKMTADIAANANDgASEVETS 227
                 89********998877777777555799***************************************9999988888875 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.04
   TIGR00249  87 vadyleelkeegvksvllvsHlPllgel 114
                 ++ + +e k   v++v+ vsH   l  l
  MMETSP1061-20121228|8223_1 294 IQTLVNEAKAADVRCVAAVSHSAYLRVL 321
                 555667778888*********8777655 PP

>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.7e-07   0.00017       3      72 ..     149     219 ..     147     235 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.7e-07
   TIGR01258   3 lvlvrhGeseWnkenlftGW.vdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeld 72 
                 + l rhG++e n++    G  vd  ++ +Gk++a++ g +l+ ++ ++++ ++s l ra  t+ i+ ++ d
  MMETSP1061-20121228|8223_1 149 IYLCRHGQTENNRLRIVQGArVDPPININGKNQATNLGLALARADPKPELFFSSSLLRAKMTADIAANAND 219
                 6799************999538****************************************999877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.07s 00:00:00.31 Elapsed: 00:00:00.44
# Mc/sec: 1193.90
//
Query:       MMETSP1061-20121228|8224_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1593.65
//
Query:       MMETSP1061-20121228|8225_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 804.50
//
Query:       MMETSP1061-20121228|8227_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 861.07
//
Query:       MMETSP1061-20121228|8230_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|8233_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 485.96
//
Query:       MMETSP1061-20121228|8229_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   13.9   5.6      0.005   13.4   3.9    1.2  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D
  ------ inclusion threshold ------
        9.7    3.6   9.7         21    2.5   6.7    1.5  1  TIGR01477 RIFIN: variant surface antigen, rifin family


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   3.9   2.5e-06     0.005     268     314 ..     210     257 ..     194     314 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.5e-06
   TIGR02031 268 lpRatrleekepeqeeppppPpPp.epesegeeeedeeeeeeeekeee 314
                 ++++ rl++++++q+ ++p+P P+ e e e+e++++ +ee +++k+++
  MMETSP1061-20121228|8229_1 210 KHKKRRLQQQQQQQSYQEPEPEPErEREREPEQHQERQEERDNDKDQD 257
                 678888999777777799999999655577777766666666665544 PP

>> TIGR01477  RIFIN: variant surface antigen, rifin family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   6.7      0.01        21     175     303 ..      21     151 ..       3     169 .. 0.54

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.01
   TIGR01477 175 aalaaaaaaaieagikag.gikavieelkkklglsklkkkklkeiinasnyknasslveavkkeleelckveeskkkellcnaveksekavekkkvveeivaeaekaakaaakaaek....ketaelekaetae 303
                 a+++a  +a+++a+++a+ + +a+ +++   l++++++ ++++ + ++sn +n++ + + ++k+ +++ ++ es+  ++    v+++   + +++++++  +++++  ++ +++ ++    ++t++ ++++t++
  MMETSP1061-20121228|8229_1  21 ANAKASSSATASATTTASaSASATYQAIP--LRTASVNVQSVHDVRKVSNVSNVHDINSGIHKAGASATASAESAPIHRRIRLVRRHP-LTAASATNQAEPKTMTTRLHTHTHTHSHslshTHTNTQTHTQTQT 151
                 22222222222222222225567777777..788999999***********************9999999888887644444444333.333333333333333333333333333300002222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       349  (0.0850804); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1436.80
//
Query:       MMETSP1061-20121228|8226_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-44  146.9   4.5    7.6e-44  146.6   3.1    1.0  1  TIGR01080 rplX_A_E: ribosomal protein L24
    8.7e-06   24.0   1.5    1.8e-05   23.0   1.0    1.7  1  TIGR01079 rplX_bact: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR01080  rplX_A_E: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.6   3.1   3.7e-47   7.6e-44       1     115 [.       9     122 ..       9     123 .. 0.98

  Alignments for each domain:
  == domain 1    score: 146.6 bits;  conditional E-value: 3.7e-47
   TIGR01080   1 skqprkqrkalfeaplhvrrkllsapLskeLrekygkralpvrkgdkvrilrGdfkGkeGkvlkvdlkryriyvegvtkekvdGtevavpihpsnvmiiklklddekrkkllerk 115
                 s+++rk+rka+f a +++rrkl+sa+LskeL+ ++g+r++p+rk+d+v i rG +k +eGkv+ v++k+++++ve++++ekv+G++v+v+i +s ++i+klkld++ rk+ le k
  MMETSP1061-20121228|8226_1   9 SSSRRKARKAHFGAHSEARRKLMSANLSKELQTRHGVRSMPIRKDDEVLITRGMYKTREGKVTAVYRKKWVVHVERISREKVNGATVPVGIPASSLVITKLKLDKD-RKAKLEAK 122
                 799*******************************************************************************************************.99999987 PP

>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   1.0   8.7e-09   1.8e-05       2      43 ..      48      89 ..      47     130 .. 0.91

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 8.7e-09
   TIGR01079  2 akikkgDtVlvisGkdkGkkGkvlkvlpkkdkviVegvnlvk 43
                + i+k+D+Vl+ +G  k ++Gkv++v++kk  v Ve +   k
  MMETSP1061-20121228|8226_1 48 MPIRKDDEVLITRGMYKTREGKVTAVYRKKWVVHVERISREK 89
                569**************************9999999887666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 867.36
//
Query:       MMETSP1061-20121228|8232_1  [L=363]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (363 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1652.14
//
Query:       MMETSP1061-20121228|8234_1  [L=1466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.81u 0.15s 00:00:00.96 Elapsed: 00:00:00.52
# Mc/sec: 3721.08
//
Query:       MMETSP1061-20121228|8238_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 559.38
//
Query:       MMETSP1061-20121228|8240_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|8241_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       307  (0.0748415); expected 82.0 (0.02)
Passed bias filter:                      195  (0.0475378); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1061-20121228|8237_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    5.6  10.6       0.12    9.1   3.1    2.0  2  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.1     3e-05      0.12      17      49 ..      41      73 ..      37      78 .. 0.86
   2 ?   -0.8   0.3      0.03   1.2e+02     371     413 ..     218     258 ..     168     266 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 3e-05
   TIGR01622 17 adrdrerdksrersRdrsrdRersrskerdrdf 49
                +d++r++dk+ + ++d++++Re ++   r+r +
  MMETSP1061-20121228|8237_1 41 SDKERDKDKDEDEDKDKDSERETESGGTRNRTH 73
                489999999999999999999999988888876 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.03
   TIGR01622 371 klipsrelqaslsetsvlkalaeasfvpsevnlaseclvLsNm 413
                 + + s+   + +set+  +a a+a+   +    +s  + L+N+
  MMETSP1061-20121228|8237_1 218 RRSVSIASSSAVSETKSVAAAAKAKATAP--ASSSSSIELHNV 258
                 22222333333555555555555554444..445555556655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1927.04
//
Query:       MMETSP1061-20121228|8239_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-27   94.1  11.8    3.4e-25   87.0   8.2    2.4  1  TIGR00837 araaP: aromatic amino acid transport protein


Domain annotation for each model (and alignments):
>> TIGR00837  araaP: aromatic amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   8.2   8.3e-29   3.4e-25       3     235 ..     119     359 ..     117     488 .. 0.85

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 8.3e-29
   TIGR00837   3 aliiagtviGaGmlalPvstagawfivsllllillwllmllsgllllEvlltyea......gaslatlakdllGkkgniiaglsllfvlyiLlyAY.isaggsilselleeasgialsaraivllftvllaslvv.lstklvdritrvllvgkiiafvlvlvlllpkvktdlLld...vak.dtsylpyilsalPvlltsFGfhgnvpslvkyldknvkkvkksiliGsaiaLvlYilWqlavlG 235
                  ++++g ++GaGml +P ++ag + + +  ++i++w++ l+sgl++  v  + +        +s++++a+ +l++ +n+++g s+   +  L++A+ + ++g+i ++ll++ +   l   +   +++ +l  lv   s    +r+++ l+vg++ +f+ +l   l +v   l ++     +  +  +  il + Pv++    f+++vp+++++ld +  k+  ++++Gs i+L++Y+ W+++vlG
  MMETSP1061-20121228|8239_1 119 SMMVTGNTVGAGMLVMPEVAAGPGPMLTFCVMIGTWIVCLTSGLTIAQVAIQEHEtsgsevPSSFKEFAEATLPSASNMVSGTSVF--INTLVVAFdVFKAGQIGHSLLPSDLP--LDGMMLSYIYSGILVVLVStQSLTNLSRVSSTLVVGLFATFAGLLLPGLANVPDPLAVTslpPLLpPEEIADGILRMTPVVISVLVFQNIVPTITRLLDYDRAKIGTALVFGSFIPLLMYMAWIATVLG 359
                 699*******************************************998765544344455689******************9975..5789999868899******9998885..3333333333333333333034456899999*********************888777755422334567789******************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 2282.13
//
Query:       MMETSP1061-20121228|8244_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2045.83
//
Query:       MMETSP1061-20121228|8246_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-16   57.4   0.0    4.2e-16   57.0   0.0    1.1  1  TIGR00266 TIGR00266: TIGR00266 family protein
  ------ inclusion threshold ------
       0.25    8.9   6.9       0.36    8.4   4.8    1.1  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR00266  TIGR00266: TIGR00266 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0     2e-19   4.2e-16       2     212 ..     178     394 ..     177     401 .. 0.85

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 2e-19
   TIGR00266   2 eykirgrpsysvleltLkpgeevlvetgalvsmdrsvelktelkGGlLdalkrsllgeslflnaftae.qsegslq......LapalpGdiirlletekgillqsgaflassegvei..dtkfaglktffadeglFlLklqgkGdlflssyGaleqls.vn.eslvvdtdhivaFedtLdykvskqvdglkgdvlsGkGlv.aefkGkGkvylqsRsvssfvg 212
                 +y i+g     ++ ++L pg+  + e+g+++++ + + ++ ++ G   + + r  +ge   + +ft+e +++g         La+ +p ++    e  +++++q ga++as  +vei  d     ++   ++ gl   kl g+G  fl+  G+++q    + e + vdt+ +  + d+  ++++   +g++g + +G+G   a++kG G   +qs +++ +++
  MMETSP1061-20121228|8246_1 178 RYAITGAE-SQIVTVELPPGKSCQGEPGSMMYLTSPIRMTVNC-G--SNCFGRLCGGEDCCILNFTNEtNQVGYAAlttndpLAKVVPVEMSS-PEVGGTLIVQQGAYMASYGSVEIsfDCDCNLVRCCCGGMGLVRQKLTGTGTAFLGAMGTVVQKVlAPgEVMLVDTNCLLGYSDSCTFEIKTS-GGIVGWIGGGEGIFnASLKGPGLAIVQSTNMKLLLE 394
                 68888877.67899****************************9.3..3789999***777777788886788765511334467888888888.888899***********999987446778889****************************998745525678*******************5.************85389**********998877665 PP

>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   4.8   0.00018      0.36     109     270 ..      19     183 ..      11     186 .. 0.64

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00018
   TIGR03354 109 pafdelaptpetlvtaalqqvsseaseedlddslteagegaaprpapqaasldPlkaldqepasaadlddga....lsaelaeevae..alpadlasidaestlepelaplpaaqpapapqeqeq........aseavaltaflrglgldlelldsqaaedvleelgrllralveG 270
                 p +   + +  t++t++++q++++  ++   + +t++++++++++a      dPl+++ +++  +++ ++      ++++ ae+  +  + p++ +++ ++           ++++ ++ +++++        ase +  +++l++ g +   +++   +++ +  g ++r ++ G
  MMETSP1061-20121228|8246_1  19 PYVTTAQGRTTTTTTTSSSQQQQQSYSQSQGTYATNPPPSQSQTTANPF-RFDPLNSNTNNNTNTNNNTPDTmvetTQVSGAEPYVSsgSSPKKSSKPKSS----------KKKKSSRQSKSSASasasssygASEPSKSSKVLEASGFSHFHQEATGIHQLSDGSGGTFRYAITG 183
                 5555555666778888888888888899999999999999999999887.99***8887777777665553323333333222222233333333333333..........2222222222222222222222555558999*****************************99988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 2132.94
//
Query:       MMETSP1061-20121228|8249_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 516.96
//
Query:       MMETSP1061-20121228|8251_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1061-20121228|8247_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 2408.80
//
Query:       MMETSP1061-20121228|8248_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1852.92
//
Query:       MMETSP1061-20121228|8252_1  [L=703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.3    5.7   7.3        3.9    5.0   5.1    1.3  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   5.1   0.00095       3.9     147     228 ..     160     212 ..     118     250 .. 0.47

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00095
   TIGR03354 147 egaaprpapqaasldPlkaldqepasaadlddgalsaelaeevaealpadlasidaestlepelaplpaaqpapapqeqeqa 228
                 +++ap                             ++a++ ++v +  pa++ ++ ++++  pe+ p+p+++p ++p++++ +
  MMETSP1061-20121228|8252_1 160 PEPAP-----------------------------VPAPVPSPVPAPVPAPVPAPVSAPVSAPEPTPEPTPEPTRQPTPEPTR 212
                 22222.............................222222222222222222222222222222222222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.12s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 2577.45
//
Query:       MMETSP1061-20121228|8254_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1465.77
//
Query:       MMETSP1061-20121228|8255_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0008   16.5   0.0     0.0012   15.9   0.0    1.2  1  TIGR01121 D_amino_aminoT: D-amino-acid transaminase


Domain annotation for each model (and alignments):
>> TIGR01121  D_amino_aminoT: D-amino-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.9e-07    0.0012      38     124 ..     111     198 ..     105     205 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.9e-07
   TIGR01121  38 GklftleehidrlyasaakirldlpyskeelkellkelveknnlneGavylqvtrGvaprkhqfpdd.elkpvitayakeverpeeel 124
                 G  f ++e + r+ +   k++ + ++  + ++   +  ve++n ne ++ + +  G+  ++h+++++ +  + +ta+ ke+  +++++
  MMETSP1061-20121228|8255_1 111 GPYFNTTEDVSRFRKWLLKLSNVKGWLAAGFEAATESXVEIENENENEIKIEIENGIGNKNHSYDHNnHYPANLTANRKENISNISNI 198
                 78899***********************************************************998467788999999887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1399.08
//
Query:       MMETSP1061-20121228|8256_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 415.77
//
Query:       MMETSP1061-20121228|8253_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.6    3.3  10.1         16    2.6   5.9    1.8  2  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   5.9    0.0038        16       1      53 [.       1      53 [.       1      76 [. 0.81
   2 ?    0.2   0.0      0.02        84     189     247 ..      60     120 ..      54     150 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0038
   TIGR00570  1 mddq.aCPrCkttkyrnPslkllvnvCghtlCesCvdllfvrGsgsCpeCdtpL 53
                md+   CP C  +     + +++   Cg+++C  C  ++    sg Cp C tp 
  MMETSP1061-20121228|8253_1  1 MDEEvLCPLCCEE-LDISDRQFFPCKCGYQVCMWCWHRIRESESGLCPACRTPY 53
                6665489999765.45567899999**************************996 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.02
   TIGR00570 189 tsdldvaeliaehkeksvklekeveklksekkatfs..tgikvgaqnslvpvqkseealfe 247
                  s  dv+ +++  kek   ++ke  +++++ +  +s   g+  g q  +++++k + +l +
  MMETSP1061-20121228|8253_1  60 FSAVDVEDVLKANKEKEAAAKKERDRQRQQSEGYISevEGLAGGRQVGQMEIPKDRTQLAN 120
                 5788999999998888888888888877666665551145555888888888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 2823.87
//
Query:       MMETSP1061-20121228|8243_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1061-20121228|8261_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 523.07
//
Query:       MMETSP1061-20121228|8259_1  [L=1034]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   10.9   0.0       0.32    7.8   0.0    2.3  3  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.032   1.3e+02      78     113 ..     365     403 ..     361     416 .. 0.64
   2 ?   -2.8   0.0      0.13   5.4e+02      88     113 ..     592     617 ..     579     624 .. 0.59
   3 ?    7.8   0.0   7.9e-05      0.32      42     105 ..     658     722 ..     647     733 .. 0.60

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.032
   TIGR03866  78 elpsGedPelfvlepdgkllyianeddalvtvv...die 113
                 +l s  +  +fv  p+    +i n ++ ++++v   d++
  MMETSP1061-20121228|8259_1 365 HLGSSSEGRTFVTPPNSDEAWIINGNNHTISIVpaiDTA 403
                 566667777788888888888887777777664211444 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.13
   TIGR03866  88 fvlepdgkllyianeddalvtvvdie 113
                 ++++p  + lyia    +++  +d +
  MMETSP1061-20121228|8259_1 592 MIVHPTRRELYIAVPGKNQILKIDAD 617
                 34455555555555555555444444 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 7.9e-05
   TIGR03866  42 rPrGitlskdgkllyvcasdsdavqvldaeteevlkelpsGed.Pelfvlepdgkllyianedda 105
                 +P G++ls dg++lyv+     +++  ++et + l ++p+       ++++p+g  ly  +++ +
  MMETSP1061-20121228|8259_1 658 QPTGMALSLDGERLYVAERGTGMIHAYEVETGAFLYKIPTNFStIGGMAFAPNGGQLYFVDDETN 722
                 45666666666666666666666666666666666666655331345566666666655554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.56
# Mc/sec: 2437.08
//
Query:       MMETSP1061-20121228|8263_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-18   62.2   1.0    7.9e-18   62.1   0.7    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    1.2e-17   61.4   0.7    1.3e-17   61.3   0.5    1.0  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    1.2e-16   58.5   1.2    1.3e-16   58.3   0.8    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    4.2e-16   57.0   1.4    4.8e-16   56.8   1.0    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    3.7e-11   40.2   2.8    4.3e-11   40.0   1.9    1.1  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    6.4e-11   39.7   2.7    7.1e-11   39.5   1.8    1.0  1  TIGR02053 MerA: mercuric reductase
    1.1e-05   21.2   0.0    1.1e-05   21.2   0.0    1.0  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    1.3e-05   22.1   0.3    1.6e-05   21.8   0.2    1.1  1  TIGR03452 mycothione_red: mycothione reductase
    5.4e-05   20.8   0.2    6.4e-05   20.6   0.1    1.1  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    6.2e-05   20.2   0.2    6.4e-05   20.1   0.1    1.0  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    9.2e-05   18.8   0.1    9.2e-05   18.8   0.0    1.0  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00032   17.5   1.0    0.00032   17.5   0.7    1.0  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00044   16.7   0.1    0.00045   16.7   0.0    1.0  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
    0.00058   16.1   0.4    0.00062   16.0   0.3    1.0  1  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
    0.00069   16.5   0.4     0.0007   16.5   0.3    1.0  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    0.00069   16.4   0.4    0.00069   16.4   0.3    1.0  1  TIGR02730 carot_isom: carotene isomerase
     0.0018   14.8   0.1      0.002   14.7   0.0    1.0  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
      0.002   15.0   0.2      0.002   14.9   0.1    1.0  1  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
     0.0022   15.0   0.3     0.0024   14.9   0.2    1.0  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0032   13.9   0.2     0.0033   13.9   0.1    1.0  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
     0.0039   13.8   0.1     0.0042   13.7   0.0    1.0  1  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
     0.0044   13.8   0.1     0.0049   13.7   0.1    1.0  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0054   13.4   0.3     0.0059   13.3   0.2    1.0  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
     0.0084   12.5   0.2     0.0096   12.3   0.1    1.0  1  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
     0.0085   12.8   0.1     0.0085   12.8   0.1    1.0  1  TIGR01373 soxB: sarcosine oxidase, beta subunit family
     0.0086   12.9   0.2      0.011   12.6   0.1    1.1  1  TIGR00518 alaDH: alanine dehydrogenase
  ------ inclusion threshold ------
      0.012   12.0   0.1      0.013   11.9   0.1    1.0  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
      0.013   12.7   0.5      0.014   12.6   0.4    1.0  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      0.016   11.2   0.3      0.015   11.2   0.2    1.0  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
      0.017   11.7   0.4      0.016   11.8   0.3    1.0  1  TIGR02028 ChlP: geranylgeranyl reductase
      0.023   11.3   0.1      0.023   11.3   0.1    1.0  1  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
       0.03   10.9   1.6      0.031   10.8   1.1    1.0  1  TIGR01813 flavo_cyto_c: flavocytochrome c
       0.03   11.1   0.5      0.037   10.8   0.3    1.0  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.033   10.5   0.7      0.033   10.4   0.5    1.0  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.037   10.5   1.2       0.04   10.4   0.9    1.0  1  TIGR02734 crtI_fam: phytoene desaturase
      0.055   10.3   0.8      0.051   10.4   0.5    1.0  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.7   6.9e-20   7.9e-18       1      48 [.      11      67 .]      11      67 .] 0.98

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 6.9e-20
   TIGR01424  1 ydydlfviGaGsGGvraarlaaalGakvaiaeedl.........vGGtcvirGcvPk 48
                +dydl viG+GsGGvra+r++aa+Gakv + e ++         +GGtcv  GcvPk
  MMETSP1061-20121228|8263_1 11 FDYDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIkhgppnysaIGGTCVNVGCVPK 67
                9*******************************9999********************9 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   0.5   1.2e-19   1.3e-17       4      59 ..      13      67 .]      10      67 .] 0.94

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 1.2e-19
   TIGR01423  4 ydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpk 59
                ydlvvig gsgg+ a   +a+ +  +v +++ q +hgpp y+a+ggtcvnvgcvpk
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAA-HGAKVLLIEGQIKHGPPNYSAIGGTCVNVGCVPK 67
                9**************987765.8889*****************************8 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.8   1.2e-18   1.3e-16       1      57 [.      11      67 .]      11      67 .] 0.89

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 1.2e-18
   TIGR01438  1 ydydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipk 57
                +dydl+viGgGsGG+ a++ +a++gakvll++        +   iGGtcvnvGc+pk
  MMETSP1061-20121228|8263_1 11 FDYDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHGPPNYSAIGGTCVNVGCVPK 67
                59*****************************9655444456679************8 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   1.0   4.2e-18   4.8e-16       2      48 ..      12      67 .]      11      67 .] 0.87

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 4.2e-18
   TIGR01421  2 eydylviGGGsGGiasarraaeyGakallveek.........klGGtcvnvGcvPk 48
                +yd++viGGGsGG+ + r +a +Gak+ll+e++         ++GGtcvnvGcvPk
  MMETSP1061-20121228|8263_1 12 DYDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQikhgppnysAIGGTCVNVGCVPK 67
                6******************************854444444448************9 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   1.9   3.8e-13   4.3e-11       2      46 ..      13      66 ..      12      67 .] 0.83

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 3.8e-13
   TIGR01350  2 ydvvviGgGpgGYvaAiraaqlglkvalveke.........klGGtClnvGCiP 46
                yd+vviGgG gG  a+  +a +g kv+l+e +          +GGtC+nvGC+P
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQikhgppnysAIGGTCVNVGCVP 66
                9****************************95322333333369**********9 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   1.8   6.3e-13   7.1e-11       1      45 [.      13      66 ..      13      67 .] 0.86

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 6.3e-13
   TIGR02053  1 ydlviiGsGaaafaaaikaaelgakvvlve....rGi.....lGGtCvnvGCvP 45
                ydlv+iG+G++++ a    a  gakv+l+e    +G+     +GGtCvnvGCvP
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEgqikHGPpnysaIGGTCVNVGCVP 66
                9***************************86444467555556***********9 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   9.8e-08   1.1e-05     168     204 ..      12      48 ..       3      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 9.8e-08
   TIGR01372 168 hcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaG 204
                   D++v+G+G+ G+ a r+ a +Ga+v+l++ q + G
  MMETSP1061-20121228|8263_1  12 DYDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHG 48 
                 569****************************999887 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.2   1.4e-07   1.6e-05       2      45 ..      12      66 ..      11      67 .] 0.65

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.4e-07
   TIGR03452  2 hydliiiGtGsGnsilderf..edkriaive....kG.....tfGGtclnvGcip 45
                +ydl++iG GsG    +     +  ++ ++e    +G     + GGtc+nvGc+p
  MMETSP1061-20121228|8263_1 12 DYDLVVIGGGSGGVRASRMSaaHGAKVLLIEgqikHGppnysAIGGTCVNVGCVP 66
                7***********76555433103445656653222333333378**********9 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   5.6e-07   6.4e-05       1      32 [.      13      44 ..      13      52 .. 0.94

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.6e-07
   TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekk 32
                yD+vv+G+G  G  a +  a  G++Vll+e +
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQ 44
                9****************************965 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   5.6e-07   6.4e-05      22      58 ..      13      49 ..       8      65 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 5.6e-07
   TIGR00292 22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGG 58
                 D +++G+G+ G+ a+++ a +g kv+++e ++  G 
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHGP 49
                699****************************999885 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   8.1e-07   9.2e-05     376     415 ..       9      48 ..       3      58 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 8.1e-07
   TIGR03997 376 arrrkkvlvvGgGPaGleaaataarrGhrvtllereeelG 415
                 +++   ++v+GgG +G++a++++a+ G +v+l+e + + G
  MMETSP1061-20121228|8263_1   9 PNFDYDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHG 48 
                 55566789*************************9876665 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.7   2.8e-06   0.00032       2      34 ..      16      48 ..      15      62 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.8e-06
   TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEknkkig 34
                ++iGgG  G+ a+ + a++gakVll+E + k g
  MMETSP1061-20121228|8263_1 16 VVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHG 48
                8**************************987765 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   3.9e-06   0.00045     374     408 ..      14      48 ..       7      61 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.9e-06
   TIGR03996 374 dvlvvGGGpaGleaarvlavrGhrvtlaeasarlG 408
                 d +v+GGG  G+ a+r++a++G +v l+e   + G
  MMETSP1061-20121228|8263_1  14 DLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHG 48 
                 6789*************************887776 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.3   5.4e-06   0.00062       1      35 [.      13      47 ..      13      62 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.4e-06
   TIGR00136  1 fdviviGaGhaGieaalaaarlgaktllltlnldt 35
                +d++viG+G  G+ a+ ++a  gak+ll+  ++++
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKH 47
                689**************************988876 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.3   6.1e-06    0.0007       1      43 [.      13      55 ..      13      66 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 6.1e-06
   TIGR02023  1 ydvlviGggpsGaaaaetLakagievillerelarikPCGGai 43
                yd +viGgg +G  a+ + a +g +v+l+e ++++  P   ai
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHGPPNYSAI 55
                799***************************9988877766666 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.3   6.1e-06   0.00069       1      36 [.      13      48 ..      13      65 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.1e-06
   TIGR02730  1 ydaivigsgigglvtatqlaakgakvlvlekylipg 36
                yd +vig g gg+ ++   aa+gakvl++e  +  g
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHG 48
                9***********9999999**********9876544 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.7e-05     0.002       3      37 ..      14      48 ..      12      54 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.7e-05
   TIGR02733  3 svvviGaGiaGltaaallakrGlevtlleaaaqvG 37
                ++vviG+G +G+ a+ + a++G +v l+e + + G
  MMETSP1061-20121228|8263_1 14 DLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHG 48
                68***************************987776 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.8e-05     0.002       2      32 ..      14      43 ..      13      62 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.8e-05
   TIGR03970  2 DvlvvGaGsaGsvlaarLsedpsatvtvlea 32
                D++v+G+Gs G v a r+s+  +a+v+++e 
  MMETSP1061-20121228|8263_1 14 DLVVIGGGS-GGVRASRMSAAHGAKVLLIEG 43
                777888776.779****************95 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   2.1e-05    0.0024       1      42 [.      14      54 ..      14      62 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.1e-05
   TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaapklpfnntygv 42
                Dl+viGgG  g+  +  +a+ g +v lie++ k+ ++ +y++
  MMETSP1061-20121228|8263_1 14 DLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKH-GPPNYSA 54
                9*******99999999999**********87776.5566775 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.9e-05    0.0033       5      36 ..      13      44 ..      10      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.9e-05
   TIGR03143  5 ydlvviGgGpaglsaGiyagraklkvliiekd 36
                ydlvviGgG+ g+ a   ++    kvl+ie +
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQ 44
                9****************9999999****9965 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.6e-05    0.0042       1      31 [.      13      43 ..      13      57 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.6e-05
   TIGR01377  1 fDvivvGaGvmGsaaayqLakrgkkvLLleq 31
                +D +v+G G+ G+ a+   a +g kvLL+e 
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEG 43
                89***************************94 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   4.3e-05    0.0049       2      42 ..      13      53 ..      12      63 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.3e-05
   TIGR00031  2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncyd 42
                +d++++G G  G+  + + a ++ +vl++e + + G   y 
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHGPPNYS 53
                9********99999999*************88776666665 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.2   5.2e-05    0.0059       1      36 [.      13      48 ..      13      55 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.2e-05
   TIGR01292  1 ydviiiGaGpaGltaaiYaaranlktlliegkeagg 36
                yd+++iG+G +G+ a+  +a  + k+llieg+ + g
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHG 48
                79****************************998776 PP

>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   8.4e-05    0.0096       1      31 [.      14      44 ..      14      51 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.4e-05
   TIGR03377  1 dvvviGGGatGaGilRDlalRglkvvLlekk 31
                d+vviGGG+ G+   R  a  g kv+L+e +
  MMETSP1061-20121228|8263_1 14 DLVVIGGGSGGVRASRMSAAHGAKVLLIEGQ 44
                689*************************953 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   7.5e-05    0.0085      24      54 ..       6      35 ..       2      54 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 7.5e-05
   TIGR01373 24 spepkpeydviivGgGGhGlatayylakehG 54
                +p+p   yd +++GgG  G+  a  ++  hG
  MMETSP1061-20121228|8263_1  6 TPDPNFDYDLVVIGGGSGGVR-ASRMSAAHG 35
                7*************9988875.455666677 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   9.3e-05     0.011     169     197 ..      14      42 ..      10      48 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 9.3e-05
   TIGR00518 169 kvtiiGgGvvGtnaaklavGlGatvtild 197
                 ++++iGgG  G+ a++++   Ga+v +++
  MMETSP1061-20121228|8263_1  14 DLVVIGGGSGGVRASRMSAAHGAKVLLIE 42 
                 689**********************9987 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1   0.00011     0.013     212     245 ..      12      45 ..       6      57 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00011
   TIGR03140 212 kydvlvvGgGPagaaaaiyaarkGlkvalvaeri 245
                  yd++v+GgG  g+ a+  +a  G kv l+  +i
  MMETSP1061-20121228|8263_1  12 DYDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQI 45 
                 69*************************9998766 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.4   0.00012     0.014       2      34 ..      16      48 ..      15      54 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00012
   TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEarrqlG 34
                vv+GgG  G+ A    a++G++v l+E + + G
  MMETSP1061-20121228|8263_1 16 VVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHG 48
                8**************************876655 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   0.00013     0.015       2      53 ..      12      63 ..      11      67 .] 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00013
   TIGR01816  2 kfdvvvvGaGGaGlraalelakeglktavvtklfPtrshtvaaqGGisaalg 53
                 +d vv+G+G  G+ra+   a +g k+  +           +a GG ++ +g
  MMETSP1061-20121228|8263_1 12 DYDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHGPPNYSAIGGTCVNVG 63
                69***********************999988777777777777777777766 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.3   0.00014     0.016       4      46 ..      16      58 ..      13      67 .] 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00014
   TIGR02028  4 avvgggpagasaaetlakagiqtfllerkldnakpcggaiplc 46
                 v+ggg  g  a+   a  g++ +l+e +++   p   ai   
  MMETSP1061-20121228|8263_1 16 VVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHGPPNYSAIGGT 58
                79****************************9999988888654 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1    0.0002     0.023       3      32 ..      14      43 ..      12      58 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0002
   TIGR02485  3 dvlviGgGlaglCaaiearraGasvlllea 32
                d++viGgG  g+ a+ +++  Ga vll+e 
  MMETSP1061-20121228|8263_1 14 DLVVIGGGSGGVRASRMSAAHGAKVLLIEG 43
                789************************996 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   1.1   0.00027     0.031       1      38 [.      14      50 ..      14      65 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00027
   TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGN 38
                d+vv+G G+ G+ a+    ++g a+v+++e +   G  
  MMETSP1061-20121228|8263_1 14 DLVVIGGGSGGVRASRMSAAHG-AKVLLIEGQIKHGPP 50
                78********************.9******88777754 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00032     0.037       1      32 [.      13      43 ..      13      46 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00032
   TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiiaaG 32
                +D ++iGgG  G+ ++   a +G k+++i  G
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIE-G 43
                9************************99985.4 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00029     0.033       1      47 [.      14      60 ..      14      66 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00029
   TIGR01812  1 DvvivGaGlAGlraAveaakkglkvaviskvyptRsHsvaAqGGiaa 47
                D+v++G+G  G+ra    a +g+kv +i           +A GG++ 
  MMETSP1061-20121228|8263_1 14 DLVVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHGPPNYSAIGGTCV 60
                89***********************9998776666666777777665 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.9   0.00035      0.04       2      34 ..      16      48 ..      15      57 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00035
   TIGR02734  2 vViGaGlgGLAlAirLaaaGievtvlekrdkpG 34
                vViG+G gG  ++   aa+G +v ++e + k G
  MMETSP1061-20121228|8263_1 16 VVIGGGSGGVRASRMSAAHGAKVLLIEGQIKHG 48
                8************999***********988877 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.5   0.00045     0.051       1      32 [.      13      44 ..      13      65 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00045
   TIGR03364  1 tdvvvvGaGivGlahAlaaarrGlkVtviers 32
                +d+vv+G+G  G+  +   a++G kV +ie +
  MMETSP1061-20121228|8263_1 13 YDLVVIGGGSGGVRASRMSAAHGAKVLLIEGQ 44
                79***************************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        68  (0.0165773); expected 4.1 (0.001)
Passed Fwd filter:                        36  (0.00877621); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              36  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 304.94
//
Query:       MMETSP1061-20121228|8260_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.48
# Mc/sec: 1685.61
//
Query:       MMETSP1061-20121228|8264_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|8262_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1686.53
//
Query:       MMETSP1061-20121228|8265_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-10   36.3   0.2    1.1e-09   36.0   0.1    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.7e-06   23.4   0.0    4.2e-06   23.2   0.0    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
      0.018   13.0   8.2      0.021   12.7   5.7    1.1  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.1   7.7e-13   1.1e-09       3      41 ..      29      67 ..      27      71 .. 0.89

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 7.7e-13
   TIGR02349  3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaee 41
                Ye Lg s  As++e+kk Yr+la  yHPD+++++++ ++
  MMETSP1061-20121228|8265_1 29 YEALGCSPRASQAELKKEYRRLALIYHPDKQQQQQQQQQ 67
                *******************************97666554 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0     3e-09   4.2e-06       5      39 ..      29      63 ..      26      69 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 3e-09
   TIGR03835  5 yevLgidrDadeqeikkafrkLakkyhPDrnkaad 39
                ye Lg ++ a + e+kk +r+La  yhPD+ ++ +
  MMETSP1061-20121228|8265_1 29 YEALGCSPRASQAELKKEYRRLALIYHPDKQQQQQ 63
                *****************************998754 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   5.7   1.6e-05     0.021       5      35 ..      40      70 ..      37      72 .] 0.75

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.6e-05
   TIGR00714  5 ekaLrkryrklQkqyHPDvsksaqeqaaalq 35
                +  L+k+yr+l   yHPD  +++q+q++  q
  MMETSP1061-20121228|8265_1 40 QAELKKEYRRLALIYHPDKQQQQQQQQQQQQ 70
                6789**************5555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|8258_1  [L=720]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (720 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 3394.01
//
Query:       MMETSP1061-20121228|8268_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 479.33
//
Query:       MMETSP1061-20121228|8269_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 496.53
//
Query:       MMETSP1061-20121228|8273_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 401.97
//
Query:       MMETSP1061-20121228|8274_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.14s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|8275_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|8280_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.006   13.6   0.1      0.006   13.6   0.1    1.0  1  TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA


Domain annotation for each model (and alignments):
>> TIGR00974  3a0107s02c: phosphate ABC transporter, permease protein PstA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.5e-06     0.006      39      78 ..       7      47 ..       1      54 [. 0.77

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.5e-06
   TIGR00974 39 ltseptetgaegGilp.aivgtlllillaiviavplGilaa 78
                l s+ +++++ +Gil+ +i g +l+++l++via+ ++i++a
  MMETSP1061-20121228|8280_1  7 LGSNDQSEETRHGILRvKINGPFLVLVLVVVIAIAIAIAIA 47
                5556666667788887368889999999999*999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.18s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|8277_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.9   0.3        2.7    5.9   0.0    3.2  3  TIGR02574 stabl_TIGR02574: putative addiction module component, TIGR02574 family


Domain annotation for each model (and alignments):
>> TIGR02574  stabl_TIGR02574: putative addiction module component, TIGR02574 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0   0.00067       2.7      14      42 ..      98     126 ..      96     134 .. 0.89
   2 ?   -0.7   0.0     0.074     3e+02      17      32 ..     136     151 ..     133     153 .. 0.78
   3 ?    2.9   0.1    0.0056        23      36      61 ..     256     281 ..     223     284 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00067
   TIGR02574  14 vedlwdsiaaeakalelteaqkaELerRl 42 
                 v  ++dsi+ ++  +++ ++ +  L  R+
  MMETSP1061-20121228|8277_1  98 VDSIFDSIDTNGDGVISPDELRSHLVDRM 126
                 678*****************999998887 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.074
   TIGR02574  17 lwdsiaaeakalelte 32 
                 l+dsi+ +    ++++
  MMETSP1061-20121228|8277_1 136 LFDSIDTDSNGSISKD 151
                 89****9988777555 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.0056
   TIGR02574  36 aELerRladykadpskaipwEevkar 61 
                 +  +   a ++a+++ +i+++ev+a 
  MMETSP1061-20121228|8277_1 256 DYVQTMFATLDANRDGGISRDEVRAA 281
                 445555677899***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1704.86
//
Query:       MMETSP1061-20121228|8278_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 2307.81
//
Query:       MMETSP1061-20121228|8284_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|8283_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00051   15.8   0.0    0.00076   15.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.8e-07   0.00076      86     186 ..     402     503 ..     379     516 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.8e-07
   TIGR03903  86 lqvLDalaaahdaGvvhRDLkPqnimvs......aadv.....eshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                  q L++l   h+  ++h DLkP+ni++       +++      ++  kv+DFG ++              +++ ++ + +Y aPe + g      sDl++ G i+ e   G+
  MMETSP1061-20121228|8283_1 402 QQLLETLEFLHSFRLIHTDLKPENILLLngrkvpQRGGysipeSTRIKVIDFGGATYDN----------EKKGSIVNTRQYRAPEVILGVGWSMPSDLWSIGCILAELYQGE 503
                 699**********************9751111113443111113356777777555432..........2456889999**************************9988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 2856.62
//
Query:       MMETSP1061-20121228|8285_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-05   19.7   0.0    0.00012   19.3   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.8e-08   0.00012      86     173 ..      51     137 ..      30     141 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.8e-08
   TIGR03516  86 petgDlvsfeyeikaldgdviyskeelgpktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtll 173
                 p  +   s +ye k +dg+v  s  + g+   +   +++i+G  +++++m  g++  +++Ps  +yG  G   kig    +  ++ +l
  MMETSP1061-20121228|8285_1  51 PTVDSPCSCHYEGKLIDGTVFDSSYDRGSPS-TFAPNQVIKGWTEAMQIMVVGDKWEMYIPSELGYGDRGSPPKIGGGDVLVFQMEIL 137
                 6666667778888888888888888877543.3445789************************************9877766666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 1590.82
//
Query:       MMETSP1061-20121228|8286_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-12   43.0   0.3    4.7e-12   43.0   0.2    2.0  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    5.6e-09   32.9   0.0    9.1e-09   32.2   0.0    1.2  1  TIGR00717 rpsA: ribosomal protein S1
     0.0004   16.7   0.1     0.0004   16.7   0.0    1.4  2  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.2   3.4e-15   4.7e-12     619     688 ..      66     143 ..      57     144 .. 0.81
   2 ?   -3.1   1.5       0.3   4.2e+02     247     277 ..     343     373 ..     305     393 .. 0.40

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 3.4e-15
   TIGR03591 619 gkvyegkvvkiadfgafvel....lpgkdglvhiSelaeervekvedvlkegdevkvkvleidkk....grvklsrka 688
                 g v +g+v++i+++gafv++       ++gl+hiS+la++rve+v+d+lk++++v+  +le++ +     r++ls+k+
  MMETSP1061-20121228|8286_1  66 GLVIRGEVIRIESYGAFVSFrdriQRHHKGLLHISQLASHRVENVTDILKMNQQVHAVILEVEYDqrigKRIRLSMKD 143
                 66789*************97222146789********************************98751122467888886 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.3
   TIGR03591 247 kealkieekqereealeevkeevleelaeee 277
                  ++ + + k++++e+ eev++++l++++e+ 
  MMETSP1061-20121228|8286_1 343 GRQNEKKMKSNEDEKKEEVSTDALRDMKESD 373
                 1111122222222222333333333322222 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   6.6e-12   9.1e-09     267     347 ..      60     146 ..      53     163 .. 0.79

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 6.6e-12
   TIGR00717 267 ekkfkvgkkikgkvtnladyGvfveieegiE....GlvhvsElsWekknskPskvvkvGdevevkvleideerr...rvslslKqvka 347
                  k++ +g +i+g v +++ yG+fv   + i     Gl+h+s l+  +++++  +++k+ ++v +++le++ ++r   r++ls+K v +
  MMETSP1061-20121228|8286_1  60 DKNLCPGLVIRGEVIRIESYGAFVSFRDRIQrhhkGLLHISQLAS-HRVENVTDILKMNQQVHAVILEVEYDQRigkRIRLSMKDVDQ 146
                 567788889999999999999999888887444449999999984.566778899999999999999988877545589999998765 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.9e-07    0.0004     653     712 ..      70     129 ..      61     139 .. 0.81
   2 ?   -5.2   0.8       1.2   1.6e+03     286     320 ..     347     381 ..     337     385 .. 0.64

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.9e-07
   TIGR02696 653 lgtvvkttafgafvsl....lpgkdgllhiseirkladgkrvekvedvlsvgekikveiadidd 712
                  g v++  ++gafvs+       + gllhis++      +rve+v d+l++ ++++  i +++ 
  MMETSP1061-20121228|8286_1  70 RGEVIRIESYGAFVSFrdriQRHHKGLLHISQL----ASHRVENVTDILKMNQQVHAVILEVEY 129
                 5899***********7222135689******55....4689***************99998864 PP

  == domain 2    score: -5.2 bits;  conditional E-value: 1.2
   TIGR02696 286 kqereeaedelkekvkeklaeeleerekelsaayk 320
                 +++ +++ede ke+v+ +   +++e++ + ++a+k
  MMETSP1061-20121228|8286_1 347 EKKMKSNEDEKKEEVSTDALRDMKESDLKEANAFK 381
                 34445667777777777777777766666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 2038.07
//
Query:       MMETSP1061-20121228|8281_1  [L=768]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.5    3.8  16.0        1.8    4.8   9.5    1.7  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   9.5   0.00043       1.8      51     192 ..     381     524 ..     345     550 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00043
   TIGR03319  51 ealleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeelee..llkeqkeeLekisgltqeeAkellleeveeelkeeaaklikeieeeakeeadkkakeilalai 192
                  +  e  ++v++  +e+ek ++ + +e ++++++   ++ +l+ +++++ + ++ ++++ek+l+e+e++  e+ +e+++  + +++++ ++ i + ++ e +e  le  +e+l+e +  +  ++  eake++ + +ke+ +   
  MMETSP1061-20121228|8281_1 381 GKSTENEKNVTEPSTETEKSATGKPAETSTENEKSGTETPTLAGNEKNVPQSDKLVQENEKQLSENENQPPEQLDETSTsaKASNETSVVNPINATSAMETNESSLECSKENLSEGVNPTSDNTAVEAKESSPRSSKEMWSVKA 524
                 44567778888889999999999*******************************************99988776665550045556677999*********************************************9976544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (768 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 2815.77
//
Query:       MMETSP1061-20121228|8289_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.8e-201  666.3   0.4   7.5e-201  666.0   0.3    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    7.5e-79  263.3   1.2    1.3e-78  262.5   0.9    1.3  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    8.9e-72  240.3   0.2    1.1e-71  240.0   0.1    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.1e-39  134.4   0.2    1.8e-39  133.6   0.1    1.3  1  TIGR03689 pup_AAA: proteasome ATPase
    1.5e-07   28.2   0.0    3.2e-07   27.1   0.0    1.5  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    2.6e-06   24.0   1.1    2.9e-06   23.9   0.0    1.5  2  TIGR00763 lon: ATP-dependent protease La
    8.3e-06   22.8   0.1    0.00082   16.2   0.0    2.4  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    5.6e-05   20.1   0.0    0.00011   19.2   0.0    1.4  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00025   18.0   0.0     0.0005   17.0   0.0    1.5  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0003   17.8   0.0    0.00058   16.8   0.0    1.4  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0064   12.5   0.0       0.12    8.4   0.0    2.4  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
  ------ inclusion threshold ------
      0.019   12.3   0.0      0.035   11.4   0.0    1.3  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
      0.038   10.4   0.2      0.068    9.5   0.1    1.3  1  TIGR00368 TIGR00368: Mg chelatase-like protein


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  666.0   0.3  2.4e-203  7.5e-201       6     495 ..     372     866 ..     367     867 .. 0.94

  Alignments for each domain:
  == domain 1    score: 666.0 bits;  conditional E-value: 2.4e-203
   TIGR01241   6 llsllplilllvglfllflrq...akgaggs.r......ifslgkskaklleeekvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlk..kvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlekksrvisekekklvayheaGhalvgllvkeadkvkkvtiiprGq.alGvtlslPeedklllskkellakiavllgGrvaeeiifgevttGasnDlkkatkiaramvtelGmseklgavayeeeeeevllgkelkkekeyseetakeiDeevkriieeaykkakeilkekkeelellakeLleketiekeelkell 495
                 +ls+lp ++l+   f++++ +   + g+ggs r      +f++gks  k+++ e+vkv+f+ vaG+deak+e+ve+vdfL++p++ftklGakiPkG+ll+GpPGtGktLlakavaGeagvpffsisGsdf+emfvGvG srvrDlf++a++naPciifiDeiDavGr+rg+g +ggndere+tLnqlLvemDGf+t+ gv+vla+tnr d+LD+aL rPGrfDrq++vd+Pdlkgr+ei+kvh+k ++l++ +d    ++a  tpGf+Gad+an++neaa++aar++ ++v+++++e+a+dr+i Gle  +++++++e+ +va+heaGha++g+++++ad++ kvtiipr   alG++++lP+e  +l +++e+++ + ++l+Gr+aeei+fg+vttGas+Dl+++t+++ + +  +Gm  +lg++a+ ++++ ++       e+ yse+ta+ +Dee ++i++eay+++ ++l+ekk+e+e +ak+Lleketi ++++++l+
  MMETSP1061-20121228|8289_1 372 ILSVLPSLVLMGAAFYFMRFAagsMGGMGGSgRgggmggMFQVGKSTHKKIKPEDVKVNFSSVAGCDEAKKEIVEFVDFLQSPEQFTKLGAKIPKGALLCGPPGTGKTLLAKAVAGEAGVPFFSISGSDFIEMFVGVGPSRVRDLFKEARENAPCIIFIDEIDAVGRQRGRGGAGGNDERENTLNQLLVEMDGFDTKSGVVVLAGTNRVDILDQALTRPGRFDRQITVDRPDLKGRKEIFKVHLKGITLKDPIDDVagRLAGLTPGFAGADIANICNEAAIVAARRKADTVSMDDFEKATDRIIGGLES-NKIMNDEERSIVAHHEAGHAIAGWFLEHADPLLKVTIIPRTSgALGFAQYLPKE-VFLRTQEEIMDIVCMALAGRAAEEIFFGRVTTGASDDLRRVTDLVYSTIQLYGMNPRLGQLAFPKNDNAMF------DERPYSEKTARVMDEEARMIVDEAYQRTLDLLREKKHEVESVAKMLLEKETIVHDDVHNLV 866
                 667888777776666555444344444443322455567*******************************************************************************************************************************************************************************************************************988743369***********************************************986.678999***********************************99*********99.9***************************************************************8875555......4578*****************************************************9986 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.5   0.9   4.2e-81   1.3e-78     115     363 ..     425     674 ..     418     675 .. 0.97

  Alignments for each domain:
  == domain 1    score: 262.5 bits;  conditional E-value: 4.2e-81
   TIGR01242 115 erpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvd..leelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekv 363
                 e  +v++  + G ++  +ei e v++ l+ pe f ++G + pkG ll GppGtGktllakava e+   f  + gs++++ ++G G + vr++fk a+e ap+iifideida++ +r    ++G+ e + tl qll e+dGfd++  v v+a tnr+dild al rpGrfdr i v  pdl+Gr ei+k+h + + l++ +d     la lt G++Gad+  i+ ea + a r++ d+v+m+df ka +++
  MMETSP1061-20121228|8289_1 425 EDVKVNFSSVAGCDEAKKEIVEFVDF-LQSPEQFTKLGAKIPKGALLCGPPGTGKTLLAKAVAGEAGVPFFSISGSDFIEMFVGVGPSRVRDLFKEARENAPCIIFIDEIDAVGRQRGRGGAGGNDERENTLNQLLVEMDGFDTKSGVVVLAGTNRVDILDQALTRPGRFDRQITVDRPDLKGRKEIFKVHLKGITLKDPIDdvAGRLAGLTPGFAGADIANICNEAAIVAARRKADTVSMDDFEKATDRI 674
                 55689*******************97.9**************************************************************************************************************************************************************************999843457*****************************************998 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.0   0.1   3.4e-74   1.1e-71     436     695 ..     415     677 ..     408     848 .. 0.92

  Alignments for each domain:
  == domain 1    score: 240.0 bits;  conditional E-value: 3.4e-74
   TIGR01243 436 epsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadl..seavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvd..leelakktegytgadieavvreaalaalresvksvakekleaeekeilkd 695
                   s+ +++  e  +v+++ + g +e+k+e+ e v++ l+ +e f klg + pkg ll gppgtgktllakava e+g  f ++ g + +  +vg    ++r++f+ ar+ ap+iif+deida+  +rg+    ++   ++ +nqll e+dg++ +s+vvv+a tnr dild al rpgr+dr i v  pd + r+eifk+h + ++l + +d    +la  t g++gadi+ ++ eaa+ a r+   +v+ + +e+  + i+  
  MMETSP1061-20121228|8289_1 415 GKSTHKKIKPEDVKVNFSSVAGCDEAKKEIVEFVDF-LQSPEQFTKLGAKIPKGALLCGPPGTGKTLLAKAVAGEAGVPFFSISGSDFIEMFVGVGPSRVRDLFKEARENAPCIIFIDEIDAVGRQRGRGGagGNDERENTLNQLLVEMDGFDTKSGVVVLAGTNRVDILDQALTRPGRFDRQITVDRPDLKGRKEIFKVHLKGITLKDPIDdvAGRLAGLTPGFAGADIANICNEAAIVAARRKADTVSMDDFEKATDRIIGG 677
                 556667777788899********************8.9***************************************************************************************9998651155678889*******************************************************************988733468*********************************99999998888544 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.6   0.1   5.7e-42   1.8e-39     176     380 ..     426     617 ..     411     650 .. 0.88

  Alignments for each domain:
  == domain 1    score: 133.6 bits;  conditional E-value: 5.7e-42
   TIGR03689 176 vPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvs..sdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylte 380
                    v ++ + G d+  ++i + v++ ++ +e +++ + k PkG ll GPPG+Gktl+akava            a   f++i G ++++ +vG    ++r +f+ are+a    P ++f+de+d++ r rG G +   d     + qll e+dG ++ + v+v+  +nr+d++d a+ rPGr+d +i ++rPd ++ ++i++ +l+ 
  MMETSP1061-20121228|8289_1 426 DVKVNFSSVAGCDEAKKEIVEFVDF-LQSPEQFTKLGAKIPKGALLCGPPGTGKTLLAKAVAGE----------AGVPFFSISGSDFIEMFVGVGPSRVRDLFKEARENA----PCIIFIDEIDAVGRQRGRGGAggNDERENTLNQLLVEMDGFDTKSGVVVLAGTNRVDILDQALTRPGRFDRQITVDRPDLKGRKEIFKVHLKG 617
                 4468999999999999999999986.6789*******************************964..........334699***************************976....**************999876522566667789*********************************************************9974 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0     1e-09   3.2e-07     279     446 ..     435     597 ..     426     601 .. 0.75

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1e-09
   TIGR03922 279 iGlervkeqvaalkssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvek..rdga.kddfGleaidtLLarlEn.dRdrlvviiAGYekdlDklLevneGLrsRFtrki 446
                  G +++k+++  + + ++     ++ G ++++     ll GPPGtGkt +A++va   aG+          +s +d+i  ++g    +  +l  +a +    ++F+DE+ a+  +  r ga ++d   + +++LL+ ++  d    vv+ AG +  +D +L+      +RF r+i
  MMETSP1061-20121228|8289_1 435 AGCDEAKKEIVEFVDFLQSPEQFTKLGAKIPK---GALLCGPPGTGKTLLAKAVAGE-AGVPF------FSISGSDFIEMFVGVGPSRVRDLFKEARENapcIIFIDEIDAVGRQrgRGGAgGNDERENTLNQLLVEMDGfDTKSGVVVLAGTN-RVD-ILDQALTRPGRFDRQI 597
                 57777777777777777777777777777765...569****************975.77765......57999********************998754449********9776333333246667789********9647778899999964.444.3333333445666666 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   9.2e-09   2.9e-06     331     435 ..     437     539 ..     432     548 .. 0.77
   2 ?   -3.8   0.1       2.1   6.6e+02     575     614 ..     838     878 ..     813     879 .. 0.64

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 9.2e-09
   TIGR00763 331 lkkvKeRilEylavk.......klrkklkgki...lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglkkvktenP.lillDEiDKlgss 435
                  ++ K+ i+E++          k    l +ki     l GPPG GKt lak++A   +  f+ +s  G +D  e+      +vG  P ++ + +k+++ + P +i++DEiD +g++
  MMETSP1061-20121228|8289_1 437 CDEAKKEIVEFVDFLqspeqftK----LGAKIpkgALLCGPPGTGKTLLAKAVAGEAGVPFFSIS--G-SDFIEM------FVGVGPSRVRDLFKEARENAPcIIFIDEIDAVGRQ 539
                 67789999999887645544432....333332223566**********************9887..4.577775......9********************4567******9963 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2.1
   TIGR00763 575 eeekeeae.lkkeekesveideenlkkylgkpvfeseklde 614
                  e+k+e+e   k   e+ +i ++++++++g++ f+++  +e
  MMETSP1061-20121228|8289_1 838 REKKHEVEsVAKMLLEKETIVHDDVHNLVGPRPFKADPQYE 878
                 34445554245556677788899999999999999988776 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.6e-06   0.00082      46     104 ..     464     520 ..     425     523 .. 0.82
   2 ?    4.4   0.1      0.01       3.2     248     295 ..     525     572 ..     518     622 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.6e-06
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaa 104
                 +Pk  l+ G+ G Gkt +a+ +a  a++Pf  +  + f e+ +vG    s vrdl + a
  MMETSP1061-20121228|8289_1 464 IPKGALLCGPPGTGKTLLAKAVAGEAGVPFFSISGSDFIEM-FVGVG-PSRVRDLFKEA 520
                 6***************************************7.89975.68899998765 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.01
   TIGR00390 248 sGiifideidkiakkg..essgadvsreGvqrdllPiveGstvstkyGsv 295
                   iifideid + ++     +g +  re     ll   e     tk G+v
  MMETSP1061-20121228|8289_1 525 PCIIFIDEIDAVGRQRgrGGAGGNDERENTLNQLLV--EMDGFDTKSGVV 572
                 479*********987633344445567777777764..444456777766 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   3.4e-07   0.00011     120     197 ..     468     539 ..     416     559 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 3.4e-07
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiark 197
                  ll Gp G+Gktlla+++a e  vpf     + + e  +vG      +  l+++a     +    ii+ideid + r+
  MMETSP1061-20121228|8289_1 468 ALLCGPPGTGKTLLAKAVAGEAGVPFFSISGSDFIEM-FVGVGPSR-VRDLFKEAR----ENAPCIIFIDEIDAVGRQ 539
                 5899*********************976666777775.78866554.466777665....45579*********9997 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.6e-06    0.0005       4     153 ..     430     579 ..     427     616 .. 0.77

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.6e-06
   TIGR02881   4 eleklvGleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalG...Gvlfideayslar....G..GekdfGkeaidtlvkemedk.reelvlilaGysd 153
                 +++++ G +e k+ i e   + +  e+ ++ g k  k +l   + G PGtGkt +a+ +a    e +v     +  +  +d++  ++G    ++r++ k+a      ++fide  ++ r    G  G  d   +++++l+ em+    +  v++laG ++
  MMETSP1061-20121228|8289_1 430 NFSSVAGCDEAKKEIVEFVDFLQSPEQFTKLGAKIPKGAL---LCGPPGTGKTLLAKAVAG---EAGV----PFFSISGSDFIEMFVGVGPSRVRDLFKEAREnapCIIFIDEIDAVGRqrgrGgaGGNDERENTLNQLLVEMDGFdTKSGVVVLAGTNR 579
                 688999***********************99999999886...78***********99984...6776....5788999*******************9986422279*****98886433334334577788899999999987514556889999654 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.8e-06   0.00058      33      95 ..     468     538 ..     456     540 .. 0.72

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.8e-06
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpalek......pgDlaailtaleegd..vlfiDeihrlsk 95 
                  ll GPPG Gkt lak +a e gv    +sg  +        p+ +  ++ + +e+   ++fiDei ++ +
  MMETSP1061-20121228|8289_1 468 ALLCGPPGTGKTLLAKAVAGEAGVPFFSISGSDFIEmfvgvgPSRVRDLFKEARENApcIIFIDEIDAVGR 538
                 79**********************99999987653212222255555666555444333888888888765 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00037      0.12     459     525 ..     434     503 ..     412     508 .. 0.72
   2 ?    1.5   0.0     0.044        14     264     290 ..     511     537 ..     504     613 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00037
   TIGR02639 459 ifGqdeaiealvkaik..rsraGlke..enkPvgsflfvGptGvGktelakqLaeelgvellrfDmseyme 525
                 + G dea +++v+ +   +s   +++   + P g+ l  Gp G Gkt lak++a e gv +  +  s++ e
  MMETSP1061-20121228|8289_1 434 VAGCDEAKKEIVEFVDflQSPEQFTKlgAKIPKGA-LLCGPPGTGKTLLAKAVAGEAGVPFFSISGSDFIE 503
                 56677777777766641134444544213456666.568**********************9999888887 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.044
   TIGR02639 264 erlkevveeiekeedailfiDeihtiv 290
                  r++++ +e +++   i+fiDei ++ 
  MMETSP1061-20121228|8289_1 511 SRVRDLFKEARENAPCIIFIDEIDAVG 537
                 6999999*****99*********9874 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00011     0.035      26      57 ..     470     501 ..     455     519 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00011
   TIGR02640  26 lrGPaGtGktslalhvakkrdrPvvllnGdae 57 
                 l GP GtGkt la +va + + P   + G + 
  MMETSP1061-20121228|8289_1 470 LCGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 501
                 78***********************9999875 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.1   0.00022     0.068     215     233 ..     469     487 ..     459     491 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00022
   TIGR00368 215 lllGPPGsGktllakrlqg 233
                 ll GPPG+Gktllak + g
  MMETSP1061-20121228|8289_1 469 LLCGPPGTGKTLLAKAVAG 487
                 899************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.66u 0.16s 00:00:00.82 Elapsed: 00:00:00.35
# Mc/sec: 3461.89
//
Query:       MMETSP1061-20121228|8292_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 1062.20
//
Query:       MMETSP1061-20121228|8291_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-11   41.8   1.1    2.2e-09   35.0   0.3    2.2  2  TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
    4.2e-09   34.2   1.7    2.6e-07   28.4   1.2    2.1  1  TIGR02056 ChlG: chlorophyll synthase ChlG
    0.00031   18.2   1.1    0.00091   16.6   0.8    1.8  2  TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase


Domain annotation for each model (and alignments):
>> TIGR01476  chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.0   0.3   1.6e-12   2.2e-09      49     138 ..     186     278 ..     162     305 .. 0.73
   2 !    5.3   0.0    0.0018       2.4     168     206 ..     335     373 ..     319     385 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.0 bits;  conditional E-value: 1.6e-12
   TIGR01476  49 lltGlsqavndyaDrdvDainePqrpiPsGaislrevlililvltvlglavalvlgrwv.......ivlltvlGvvlaliyslePiklkrngWlGna 138
                 l+  +   +n+ +D ++D in+P+ pi sG +s+r +++ ++  +vl+ ++    g  v       + ++  + ++l  +ysl+P +lkr  +l   
  MMETSP1061-20121228|8291_1 186 LMNLYITGLNQITDVEIDKINKPNLPIASGDLSVRDATLVVVASLVLSFGL----GAAVpslategLGMALGMSAILGTLYSLPPFRLKRYPFLAAF 278
                 55566778999************************9976655444444444....44443333443556666778999************9887654 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0018
   TIGR01476 168 LlyslaaaGilvlnDfksveGDrklGlrslpvalGvkva 206
                 L +++ ++ i+++ D+  v GD    +r+++v lG+k+ 
  MMETSP1061-20121228|8291_1 335 LYFAVFGLVIALMKDVPDVAGDELSNIRTVSVRLGPKKV 373
                 66788899999************************9875 PP

>> TIGR02056  ChlG: chlorophyll synthase ChlG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   1.2   1.9e-10   2.6e-07      63     165 ..     184     283 ..     161     377 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 1.9e-10
   TIGR02056  63 gplltgytqtlndfydreidainepyrpipsgaisvpevvtqvvllllaglavafildlwaghetptvtvlalfgs.llayiysapplklkqngwlgnyalgas 165
                   l+  y   ln+  d eid in+p  pi sg +sv +    v    +a l ++f l         + + +al+ s +l  +ys pp++lk+  +l  +++ a 
  MMETSP1061-20121228|8291_1 184 SLLMNLYITGLNQITDVEIDKINKPNLPIASGDLSVRDATLVV----VASLVLSFGLGAAVPSLATEGLGMALGMSaILGTLYSLPPFRLKRYPFLAAFCIVAV 283
                 3356679999*************************98865444....5555555555555555555566678875527899***************99988664 PP

>> TIGR01474  ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.8   6.7e-07   0.00091       7     112 ..     138     244 ..     133     289 .. 0.75
   2 ?   -2.5   0.0      0.46   6.2e+02     187     217 ..     354     385 ..     346     443 .. 0.53

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 6.7e-07
   TIGR01474   7 LaRldkP...vgtlllllPalwsillaaea...asllpalllLllftvGallmrgaGCviNDlvDrdlDkkVeRtksRPlasgavsvkqalllllvlllvalgvllllnklt 112
                 L R+ +P   +g   l +Pal+  llaa +   a + ++l+ ++  tv +llm      +N ++D ++Dk      + P+asg++sv+ a+l++++ l++++g+   + +l+
  MMETSP1061-20121228|8291_1 138 LWRFTRPhtiIGS-ALAIPALH--LLAAPTygtALTARSLISMVYATVPSLLMNLYITGLNQITDVEIDKIN--KPNLPIASGDLSVRDATLVVVASLVLSFGLGAAVPSLA 244
                 4445555221444.45778886..55665533333445666677789999****99999**********853..4688************************9977766655 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.46
   TIGR01474 187 edDakigvkstallfgdkt.ksvlailyalti 217
                   D++ ++++ ++++g k+  +++  l  + +
  MMETSP1061-20121228|8291_1 354 AGDELSNIRTVSVRLGPKKvYQAMHRLLSGLF 385
                 55777777777777776653222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2168.39
//
Query:       MMETSP1061-20121228|8290_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-45  151.5   0.7    2.6e-45  151.4   0.5    1.0  1  TIGR00982 S23_S12_E_A: ribosomal protein S23 (S12)
    2.4e-10   38.2   0.1    2.5e-10   38.2   0.1    1.1  1  TIGR00981 rpsL_bact: ribosomal protein S12
     0.0061   14.3   0.3        0.4    8.5   0.0    2.4  2  TIGR01624 LRP1_Cterm: LRP1 C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00982  S23_S12_E_A: ribosomal protein S23 (S12)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.4   0.5   1.9e-48   2.6e-45      41     138 ..       1      97 [.       1      98 [] 0.98

  Alignments for each domain:
  == domain 1    score: 151.4 bits;  conditional E-value: 1.9e-48
   TIGR00982  41 qargivlekvgveakqpnsalrkavrvqlikngkvvtafvpgdgainfidehdevivegiggpkgrsmgdipgvrykvvkvnnvslkelvkgkkekpr 138
                 +a+givlek+g+eakqpnsa+rk+vrvqlikngk+++afvp+dg++n++de dev++ g  g++g+s+gdi gvr+kvvkv +vsl +l+k kkekpr
  MMETSP1061-20121228|8290_1   1 MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGF-GRSGHSVGDIAGVRFKVVKVSGVSLWALYKQKKEKPR 97 
                 79*********************************************************8.589********************************97 PP

>> TIGR00981  rpsL_bact: ribosomal protein S12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.2   0.1   1.8e-13   2.5e-10      31     101 ..       3      81 ..       1      98 [] 0.80

  Alignments for each domain:
  == domain 1    score: 38.2 bits;  conditional E-value: 1.8e-13
   TIGR00981  31 rGvctrvktvtPkkPnsalrkvarvrl.tngvevtayipGeg..hnlqehsvvlvrG.Gr....vkdlPgvryhivrGa 101
                 +G+++    +  k+Pnsa+rk +rv+l  ng +++a++p +g    ++e + vl+ G Gr    v d+ gvr+++v+ +
  MMETSP1061-20121228|8290_1   3 KGIVLEKIGIEAKQPNSAIRKCVRVQLiKNGKKIAAFVPRDGclNYVDENDEVLIAGfGRsghsVGDIAGVRFKVVKVS 81 
                 899999999*****************84699********77733679********86544333499*********9854 PP

>> TIGR01624  LRP1_Cterm: LRP1 C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00029       0.4       9      25 ..      19      35 ..      14      39 .. 0.86
   2 ?    3.5   0.0     0.011        15      11      21 ..      74      84 ..      70      85 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00029
   TIGR01624  9 aAvFkcvrvtaiddgee 25
                 A+ kcvrv  i +g++
  MMETSP1061-20121228|8290_1 19 SAIRKCVRVQLIKNGKK 35
                5888***********96 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.011
   TIGR01624 11 vFkcvrvtaid 21
                 Fk v+v++++
  MMETSP1061-20121228|8290_1 74 RFKVVKVSGVS 84
                6*******996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 587.95
//
Query:       MMETSP1061-20121228|8296_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 494.96
//
Query:       MMETSP1061-20121228|8298_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-28   97.7   1.6    1.1e-27   94.6   1.1    1.9  1  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
      2e-26   90.7   1.0    8.6e-26   88.6   0.7    1.7  1  TIGR00692 tdh: L-threonine 3-dehydrogenase
    1.7e-23   81.3   5.4    5.2e-12   43.5   0.4    2.4  2  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
    1.7e-21   74.6   0.5    2.1e-21   74.3   0.3    1.1  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
    7.7e-21   72.4   0.8    2.1e-20   71.0   0.6    1.6  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
    3.5e-18   63.5   0.2    6.9e-13   46.1   0.1    2.1  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    9.5e-18   62.2   5.7    1.2e-15   55.3   4.0    2.2  1  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
    9.2e-16   55.3   0.0    1.4e-15   54.8   0.0    1.4  1  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    6.5e-14   49.1   2.9    2.2e-13   47.4   2.0    1.6  1  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
    6.5e-13   46.3   0.1    9.9e-13   45.7   0.0    1.3  1  TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein
    1.5e-05   22.1   0.0    0.00056   16.9   0.0    2.2  2  TIGR01202 bchC: chlorophyll synthesis pathway protein BchC
    8.7e-05   19.3   0.3      0.031   10.9   0.0    2.2  2  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
     0.0014   16.0   0.0       0.27    8.4   0.0    2.3  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
  ------ inclusion threshold ------
      0.043   10.1   0.1      0.057    9.7   0.1    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   1.1   3.9e-30   1.1e-27      51     288 ..      16     264 ..       7     291 .. 0.78

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 3.9e-30
   TIGR03451  51 sdefpfllgheaagvveavgegvtdvepgdyvvlnwravcgecrackrgrpkycfdthnaekkm..tledgtelsaalgigafaektlv.aagqctkvdpaadpavagllgcgvmag.lgaavntgevkrgdsvavigvggvgeaaiagaal...ag.akkiiavdiddkklerarelgathtvnss....eedvv.eaireltggfgadvvidavgrpetykqafyardlagtvvlvgvptpemklelpl 288
                 +  fpf+ ghe +g++ + g+ +t+++ gd v + +   cg c  c+  +p  c++  +    m  ++++  e++ a     +  k +   +  +      +   ++   g g+  g  g av  +  +  ++v v+g+gg+g ++i  a+     g  + iiavd+++k l++a   ga  +vn +    ++d v +++ elt+g+ga+++ida g p t ++a ++    g++++vg+p      ++p+
  MMETSP1061-20121228|8298_1  16 NHGFPFIPGHELSGIIVETGSAITKLQIGDRVAIPFILSCGFCAECHLDKPTVCLKQEQPGFTMlgSFAEFVEIKRADRNLRILPKGVSfVEAAALGCRFTTAYRAVLQQGLGLRNGnQGEAVAES--SGKKTVCVFGCGGLGLSCIMIAKAfenEGnIESIIAVDVSEKALDKALSCGADRIVNVRsfgmNDDAVrKKVLELTNGLGAELTIDAAGFPSTCENAVHTCRRGGRMIQVGLPIGGRPPQIPM 264
                 567*****************************************************9998887734577788888887666666665421222233333333333444457788877347777554..56679**********998766554122232578************************99555435666268*****************************************97666555555 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.6   0.7   2.9e-28   8.6e-26      54     263 ..      18     254 ..       2     279 .. 0.79

  Alignments for each domain:
  == domain 1    score: 88.6 bits;  conditional E-value: 2.9e-28
   TIGR00692  54 kvpqvlGhevaGevvgiGeevegvkvGdyvsaethivcGkcvacrrGkshvcrntkivGvdtaGvfaeyvvvp.ad.nifknpkdid.pelaaiqeplGnavdtvles..............dlaG.esvlvsGaGpiGllavavakaa...G.asqvivsdkneyrlelakkvGatrvvnv.....akedlvkvvaeltsgeGvdvvlelsGapkaleqgldavangGrvallglp 263
                   p + Ghe++G++v+ G  +  +++Gd+v+    + cG c +c+  k  vc      G    G fae+v +  ad n+   pk ++  e aa+   +  a  +vl++              + +G ++v v G+G +Gl ++ +aka    G  +++i++d++e  l+ a   Ga+r+vnv     +++ + k v elt+g G++++++ +G p++ e+++++  +gGr+  +glp
  MMETSP1061-20121228|8298_1  18 GFPFIPGHELSGIIVETGSAITKLQIGDRVAIPFILSCGFCAECHLDKPTVCLKQEQPGFTMLGSFAEFVEIKrADrNLRILPKGVSfVEAAALGCRFTTAYRAVLQQglglrngnqgeavaESSGkKTVCVFGCGGLGLSCIMIAKAFeneGnIESIIAVDVSEKALDKALSCGADRIVNVrsfgmNDDAVRKKVLELTNGLGAELTIDAAGFPSTCENAVHTCRRGGRMIQVGLP 254
                 3699******************************************************************99635425555699988446666666677776666653111111111111114455246889***************85222414678999********************83333234567899************************************999998 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.4   1.8e-14   5.2e-12      41     105 ..       2      69 ..       1      74 [. 0.87
   2 !   40.3   0.2   1.7e-13     5e-11     135     289 ..      77     254 ..      70     297 .] 0.71

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 1.8e-14
   TIGR03989  41 sdehlvtG...dlplekyPvvgGheGaGvvekvGpgvtelkeGdhvvlsfipaCGrCrlCakGlqnlC 105
                 sd+h   G   d+  + +P+++Ghe +G++++ G+ +t+l+ Gd v + fi +CG C  C+  + ++C
  MMETSP1061-20121228|8298_1   2 SDWHGWKGhddDIKNHGFPFIPGHELSGIIVETGSAITKLQIGDRVAIPFILSCGFCAECHLDKPTVC 69 
                 67777666322455678********************************************9999998 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 1.7e-13
   TIGR03989 135 mcllgtfseytvveeas.vvki.dkdipldkaalvgCgvttGfGsavkaa.............dvkaGdtvvvvGiGGvGinavqGaav...aG.arkvvavdpvefkrekalklGathava.....sieeal.elvaeltnGkgadkaiitvgevegelieealklvakgGrvvvtgla 289
                 +++lg+f+e++ +++a   ++i  k + + +aa +gC  tt + +  +++             + +  +tv v+G GG+G++++  a++    G  ++++avd+ e  ++kal  Ga   v+       ++a+ ++v eltnG ga+ +i   g   +++ e+a+++ ++gGr++ +gl 
  MMETSP1061-20121228|8298_1  77 FTMLGSFAEFVEIKRADrNLRIlPKGVSFVEAAALGCRFTTAYRAVLQQGlglrngnqgeavaESSGKKTVCVFGCGGLGLSCIMIAKAfenEGnIESIIAVDVSEKALDKALSCGADRIVNvrsfgMNDDAVrKKVLELTNGLGAELTIDAAGF--PSTCENAVHTCRRGGRMIQVGLP 254
                 789*******9998754245542889***************9988776543222111111111333446899***********988864222452579*******************98875222213467763679**********99888775..7899**************99984 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.3   7.2e-24   2.1e-21      30     294 ..      16     293 ..       1     297 [] 0.80

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 7.2e-24
   TIGR03366  30 egklpsvlGheavGevvalgseeaaavdgeklavGqRvvwsvavsCgrCerCrrgltqkCeslrkyGheslasgwelsGglaehvvllaGva.ivavpddlpdavaapaaCatatv.aaaleaagd.............legrrvlvlGaGmLGLtaaaaa....eerGasrviavDpsaeRrelaaafGaealaeeee...laevr....keatdgravdvalelsGasaaveaalesldvgGvvvlvGsvaPadevaldpeqvvRrlltvrGvhnyePrhLeeavrfLa 294
                 ++  p + Ghe  G +v++gs+       +kl++G+Rv     +sCg C++C+ + +  C   ++ G        ++ G++ae v + +  + +  +p  ++   aa+ +C   t   a+l++                   ++v v+G G LGL+ + +a    +e  +  +iavD+s++  + a++ Ga ++++  +   +++ +     e t+g ++++ ++ +G +++ e+a+++++ gG ++ vG    + + ++    v+ r l ++G h +   +L + +++++
  MMETSP1061-20121228|8298_1  16 NHGFPFIPGHELSGIIVETGSAI------TKLQIGDRVAIPFILSCGFCAECHLDKPTVCLKQEQPGF-------TMLGSFAEFVEIKRADRnLRILPKGVSFVEAAALGCRFTTAyRAVLQQGLGlrngnqgeavaesSGKKTVCVFGCGGLGLSCIMIAkafeNEGNIESIIAVDVSEKALDKALSCGADRIVNVRSfgmNDDAVrkkvLELTNGLGAELTIDAAGFPSTCENAVHTCRRGGRMIQVGLPIGGRPPQIPMGVVAGRELEIVGSHGFSATDLPDLLSYVE 293
                 34568899*************97......89*****************************98776665.......589*********9876615567999*99999999**87775268887654455666788887755567899*********97644411214445789********************99875431112222233336789************************************9999999999999*******************99888765 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.6   7.1e-23   2.1e-20      50     224 ..      16     206 ..      10     254 .. 0.81

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 7.1e-23
   TIGR03201  50 nhalplalGheisGrviqagagaas.lvGkavivpavipcGecelcksGkGticraqkmpGndlqGGfashivvpakglcavdearlkaagleleevsvvadavttpyqaavqaglk.....kgd.........lviviGvGGvGgyavqvakal...Ga..avvaidideeklemvkkaGadlilnpkdisare 224
                 nh  p+  Ghe+sG ++++g++  +  +G  v +p ++ cG c  c+  k t+c++q  pG  + G fa  + ++        + r+   g+ + e + +    tt y+a++q gl+     +g+          v v G+GG+G   + +aka+   G   +++a+d+ e+ l+   + Gad i+n + +  ++
  MMETSP1061-20121228|8298_1  16 NHGFPFIPGHELSGIIVETGSAITKlQIGDRVAIPFILSCGFCAECHLDKPTVCLKQEQPGFTMLGSFAEFVEIKRA----DRNLRILPKGVSFVEAAALGCRFTTAYRAVLQQGLGlrngnQGEavaessgkkTVCVFGCGGLGLSCIMIAKAFeneGNieSIIAVDVSEKALDKALSCGADRIVNVRSFGMND 206
                 8899999************98876526********************************************988754....467899999***********************9874322223322222222225789****************954444679**************************996554 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.6e-06    0.0014      56     101 ..      18      64 ..      14      79 .. 0.76
   2 !   46.1   0.1   2.4e-15   6.9e-13      92     262 ..      81     277 ..      72     279 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.6e-06
   TIGR02824  56 gaseilGLEvaGevvavgeevskfkvGdrvca.LvagGgyaeyvvve 101
                 g   i+G E++G++v++g++++k+++Gdrv    + + g+  ++  +
  MMETSP1061-20121228|8298_1  18 GFPFIPGHELSGIIVETGSAITKLQIGDRVAIpFILSCGFCAECHLD 64 
                 55679************************963255555555555544 PP

  == domain 2    score: 46.1 bits;  conditional E-value: 2.4e-15
   TIGR02824  92 Ggyaeyvvve.akqvlp.vpeglslveaAalpEtffTvwsnlfela.klka...........getvLihggasGiGttaiqlakalg....akvlvtagsdekle.aaekLGadvainyre.....edFvevvkeetegkGvdvilDivg.gsyleknlkalakdGrlvlial.lggakaeldlakllakrltltgs 262
                 G++ae+v ++ a++ l+ +p+g+s+veaAal   f+T++ ++++++ +l++           g++ +   g +G+G   i++aka+     ++ ++++   ek+   a + Gad+ +n r+     +   + v e t+g G+++ +D  g  s  e+ +++  + Gr+++++l +gg+  +++++ +  + l++ gs
  MMETSP1061-20121228|8298_1  81 GSFAEFVEIKrADRNLRiLPKGVSFVEAAALGCRFTTAYRAVLQQGlGLRNgnqgeavaessGKKTVCVFGCGGLGLSCIMIAKAFEnegnIESIIAVDVSEKALdKALSCGADRIVNVRSfgmndDAVRKKVLELTNGLGAELTIDAAGfPSTCENAVHTCRRGGRMIQVGLpIGGRPPQIPMGVVAGRELEIVGS 277
                 99*****997344555527************************99866777777777777887777888899*************9733345667777777775449999********98522221334567889999************4467788899999*********95677888*****999999999998 PP

>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3   4.0   4.1e-18   1.2e-15      54     307 ..      18     271 ..       3     296 .. 0.77

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 4.1e-18
   TIGR02818  54 vfpvilghegagiveavgegvtslkvgdhviplytaecgeckfcksgktnlcvavretqgkglmpdgtsrfskdgqpiyhymgtstfseytvvaeislakinkeaalekvcllgcgvttgigavlntakveegatvavfglggiglsviqgakl....akasriiaidineakfelakklgatdlvnpkdy...dkpiqeviveltdg.gvdysfecignvnvmraalesahkgwgesiiigvagagqeistrpfqlvtgrv 307
                  fp i ghe +gi+++ g  +t+l+ gd v   +   cg c  c+  k  +c +  + q    m  + + f    ++         + +     e +    +  +a+  v   g g+  g       a     +tv+vfg gg+gls+i+ ak      +   iia+d+ e+ +++a   ga  +vn + +   d  +++ ++elt+g g + ++++ g   +  +a+ ++ +g g+ i +g+   g+     p+ +v+gr 
  MMETSP1061-20121228|8298_1  18 GFPFIPGHELSGIIVETGSAITKLQIGDRVAIPFILSCGFCAECHLDKPTVCLK--QEQPGFTMLGSFAEFVEIKRAD-RN--LRILPKGVSFVEAAALGCRFTTAYRAVLQQGLGLRNGNQG-EAVAESSGKKTVCVFGCGGLGLSCIMIAKAfeneGNIESIIAVDVSEKALDKALSCGADRIVNVRSFgmnDDAVRKKVLELTNGlGAELTIDAAGFPSTCENAVHTCRRG-GRMIQVGLPIGGR-PPQIPMGVVAGRE 271
                 49****************************8889999**************965..5565555666666665433332.22..2233333344455556677788899999999999999643.4567777889***************999872221345789***********************99874447899999*****9779***********************9.8888888765554.4455777777775 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   4.7e-18   1.4e-15      79     249 ..      21     207 ..       8     256 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 4.7e-18
   TIGR01751  79 hiiGsdasGvvlrvGegvkrvkvGDevvvsclqvdeeeeesragDpmlsseqriwGyetnyGslaefalve..dsqllPkPkhLtWeeaacllLtaatayrqLv........gkkpaelkp..Gd.avLiWGaaGGLGsyaiqlara...aGgip..vavvssedkaeiarelGaeavidrqdfdlkgr 249
                  i G ++sG+++++G++++++++GD+v +  +      +e++   p ++ +q+  G+ t  Gs+aef  ++  d+ l   Pk +++ eaa+l    +tayr ++        g++++++ +  G+ +v ++G +GGLG  +i +a+a   +G i   +av  se+  + a++ Ga+ +++ + f++++ 
  MMETSP1061-20121228|8298_1  21 FIPGHELSGIIVETGSAITKLQIGDRVAIPFILSCGFCAECHLDKPTVCLKQEQPGF-TMLGSFAEFVEIKraDRNLRILPKGVSFVEAAALGCRFTTAYRAVLqqglglrnGNQGEAVAEssGKkTVCVFG-CGGLGLSCIMIAKAfenEGNIEsiIAVDVSEKALDKALSCGADRIVNVRSFGMNDD 207
                 388****************************9999********99************.89********997446788899*********************9762222222234555554322441466666.79****999999863335766343788888888899***********999988764 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.4   2.0   7.5e-16   2.2e-13      67     269 ..      22     233 ..      16     245 .. 0.75

  Alignments for each domain:
  == domain 1    score: 47.4 bits;  conditional E-value: 7.5e-16
   TIGR02819  67 vlgheitgevievgrdveflkigdivsvpfniacgrcrsckekktgvclnvnparagaaygyvdmggwvggqseyvlvpyadfnllkfpdr....dqalekirdltmlsdilptgy......hgavtagvktgstvyiagagpvglaaaasarll...g.aavvivgdlneerlaqarsfgce.tvdlk....kdatlaeqieqilgepevdaavdavgfea 269
                 + ghe++g ++e+g+ +  l+igd v++pf ++cg c+ c+  k  vcl+   +++g    +      +g  +e+v +  ad nl  +p+     + a    r  t    +l  g        g   a  +   tv + g g +gl++   a+ +   g    +i  d++e+ l +a s g + +v+++    +d+++ +++ ++      + ++da gf +
  MMETSP1061-20121228|8298_1  22 IPGHELSGIIVETGSAITKLQIGDRVAIPFILSCGFCAECHLDKPTVCLKQ--EQPG----FT----MLGSFAEFVEIKRADRNLRILPKGvsfvEAAALGCRFTTAYRAVLQQGLglrngnQGEAVAESSGKKTVCVFGCGGLGLSCIMIAKAFeneGnIESIIAVDVSEKALDKALSCGADrIVNVRsfgmNDDAVRKKVLELTNGLGAELTIDAAGFPS 233
                 669*********************************************975..5665....33....467789****************862222333334555666666665543222111677777777788**************9988877222323578889**************97467887222245666666666666666778888888865 PP

>> TIGR02822  adh_fam_2: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   3.4e-15   9.9e-13      49     163 ..      12     127 ..       3     160 .. 0.90

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 3.4e-15
   TIGR02822  49 gdlpvhrervipghevvgevveagaaegefavgdrvgiawlrrtcgvcrycrrgaenlcpasrytgwdadggyaeyttvp.aafayr.lptgyadeelapllcagiigyrallrael 163
                  d+  h    ipghe+ g +ve+g a  + ++gdrv i+++  +cg c  c+     +c + +  g+   g +ae+  +  a+  +r lp g++ +e a l c     yra+l+  l
  MMETSP1061-20121228|8298_1  12 DDIKNHGFPFIPGHELSGIIVETGSAITKLQIGDRVAIPFI-LSCGFCAECHLDKPTVCLKQEQPGFTMLGSFAEFVEIKrADRNLRiLPKGVSFVEAAALGCRFTTAYRAVLQQGL 127
                 5788899999*****************************98.58********************************9986366655449***********************98765 PP

>> TIGR01202  bchC: chlorophyll synthesis pathway protein BchC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.9e-06   0.00056      55      88 ..      16      50 ..       6      60 .. 0.85
   2 ?    3.0   0.0     0.034        10     204     273 ..     225     296 ..     203     297 .] 0.84

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.9e-06
   TIGR01202 55 glgyPlvPGyesvGrvveaaddvnf.rvGdrvfvp 88
                  g+P++PG+e  G +ve+++ + + ++Gdrv +p
  MMETSP1061-20121228|8298_1 16 NHGFPFIPGHELSGIIVETGSAITKlQIGDRVAIP 50
                579*****************998887******987 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.034
   TIGR01202 204 iydasGdsslidtlverlakgGeivlaGfy..teplafdfvpafmkelrlriaaeWqkedllavreliesGk 273
                  +da+G +s  ++ v+  ++gG+++  G     +p ++       +el++  +  +  +dl      +esGk
  MMETSP1061-20121228|8298_1 225 TIDAAGFPSTCENAVHTCRRGGRMIQVGLPigGRPPQIPMGVVAGRELEIVGSHGFSATDLPDLLSYVESGK 296
                 58***********************99974225788888888888888888888888888888888888876 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0024      0.69      55      83 ..      18      48 ..       9      57 .. 0.81
   2 !   10.9   0.0    0.0001     0.031      84     209 ..      70     210 ..      63     266 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0024
   TIGR02823 55 eyPlvpGiDlaGtvvesed..prfkeGdeVi 83
                 +P++pG +l+G++ve+ +   + + Gd+V 
  MMETSP1061-20121228|8298_1 18 GFPFIPGHELSGIIVETGSaiTKLQIGDRVA 48
                69************99655116888999986 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.0001
   TIGR02823  84 vtgydlgvshaGGyseyarvk.adw.vvplPeglslkeamilGtAGfTAaLsvea....lekag.....ltpe..egevlVtGAtGgVgslaval...LsklGy..evvavtgkkeeeeylkelGakevisreeleeekkkple 209
                 ++  + g +  G ++e++ +k ad  +  lP+g+s  ea++lG    TA  +v +    l++ g     ++++  ++ v V G  Gg g   +++   +++ G   +++av   +++ +   + Ga+++++ +++  + + +++
  MMETSP1061-20121228|8298_1  70 LKQEQPGFTMLGSFAEFVEIKrADRnLRILPKGVSFVEAAALGCRFTTAYRAVLQqglgLRN-GnqgeaVAESsgKKTVCVFGC-GGLGLSCIMIakaFENEGNieSIIAVDVSEKALDKALSCGADRIVNVRSFGMN-DDAVR 210
                 55566688999********97455515669*************8777777776542222332.212244444411446888885.66666555551124555643346777777777788999999999998887654.33333 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0091       2.7      61      87 ..      22      48 ..      11      74 .. 0.82
   2 !    8.4   0.0   0.00094      0.27      96     200 ..      81     198 ..      75     206 .. 0.62

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0091
   TIGR02817 61 ilGwdaaGvvkavGeevtlfkvGdevf 87
                i G++ +G+++++G+ +t +++Gd+v 
  MMETSP1061-20121228|8298_1 22 IPGHELSGIIVETGSAITKLQIGDRVA 48
                77999********************95 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00094
   TIGR02817  96 Gsnaefhlvd..erivgkkPkslsfaeaaalPltaitawellf.drlkieedvage......kralliiGaaGGvgsiliqlarqlte...l.tviatasraesqewvkelGahavid 200
                 Gs aef  +   +r     Pk +sf eaaal     ta+  ++   l+++++++ge       ++ + + ++GG+g   i +a++  +   +  +ia      + + +++ Ga+ +++
  MMETSP1061-20121228|8298_1  81 GSFAEFVEIKraDRNLRILPKGVSFVEAAALGCRFTTAYRAVLqQGLGLRNGNQGEavaessGKKTVCVFGCGGLGLSCIMIAKAFENegnIeSIIAVDVSEKALDKALSCGADRIVN 198
                 6667765553224666678*******************98655166998876554311122234445555555555444444444332111424677777777777788888887776 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.1   0.00019     0.057     277     322 ..     138     188 ..     124     201 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00019
   TIGR04074 277 alresgarsvlDlGcGegkLl.....kaLlaekqfekivgvdvsareLeka 322
                 + ++sg ++v+ +GcG   L      ka  +e ++e+i++vdvs ++L+ka
  MMETSP1061-20121228|8298_1 138 VAESSGKKTVCVFGCGGLGLScimiaKAFENEGNIESIIAVDVSEKALDKA 188
                 44678999********8666411111444467799*************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1005.15
//
Query:       MMETSP1061-20121228|8295_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00015   20.1   0.0     0.0023   16.2   0.0    2.5  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.026     1e+02      28      66 ..      54      92 ..      44     116 .. 0.73
   2 !   16.2   0.0   5.7e-07    0.0023      91     126 ..     212     248 ..     122     261 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.026
   TIGR01444 28 fEPlpdllekleenvklnnlknvkllnaAvgdregelef 66
                +E +  +l +  +n ++++l+ ++ +n+ +g+r+g++  
  MMETSP1061-20121228|8295_1 54 MERKESALPIGASNTADTELEGWHPINVFYGERKGLFND 92
                5556667778889999999*99***********996643 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 5.7e-07
   TIGR01444  91 eVevvtlddlveeag.lekvdllKiDvEGaEleVLrg 126
                 +  +  + +++++++ ++ +d+  +DvEG E+eV++ 
  MMETSP1061-20121228|8295_1 212 TRYTAPIVEILKKFNvPKTIDYMSLDVEGSEYEVMES 248
                 3457788899999998899***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 1083.70
//
Query:       MMETSP1061-20121228|8300_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.3    4.4   7.6          2    4.5   5.3    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   5.3   0.00049         2     329     375 ..      37      75 ..       4      79 .] 0.41

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00049
   TIGR02442 329 kkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaee 375
                 k+++++p+++++  ++++e+++        +gk++++++++++++++
  MMETSP1061-20121228|8300_1  37 KTKKKTPKQNRNRAGTNTEASS--------NGKQQQQQQQQQHQQQH 75 
                 1111111111111111222222........22222222222222221 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 453.35
//
Query:       MMETSP1061-20121228|8299_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.2    3.4  14.4        4.9    3.1  10.0    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1  10.0    0.0012       4.9     177     365 ..      61     281 ..      27     412 .. 0.59

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0012
   TIGR00934 177 prksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesis...slrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheata...............................kirdk....iseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraea.sdleeldrakdfqkmv 365
                 p  +++++  +     G++v+r  +d  + ++n++ +k ++  d+++s   +l     + k+++++++   +++ r+  +id ed ++s m l e+    +                                         s + ++++++++++s++ r+++  k ++s +s ekn+    + + + +++  ++++++  + ++  a+     + +++++  ++ +
  MMETSP1061-20121228|8299_1  61 PVSTTRESRSSGSSGDGDMVHRSGKDGENENENDKGSK-QILFDDHLSsssTLVRTGGSGKESNKNASERATTNPRGFDGIDDEDDESSLMSLEETMT--PlvviceqlfkgvdfnsmtvpstpsakesneiD---GldkeASPQTRSDQRQRQQQSNTERLRSGKKFAASSRSCEKNEGATNETRINHSMEASQRTAGAAVAMMTLLATGtEKASPINDEP-SKRNT 281
                 444455555666677899*****999999999999888.66666666645322223334455556677777888888999999998888888874333..366888888888888888888888775554441...04434677777788888888*********************994444444444444333333222222222222101222222222.22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1852.25
//
Query:       MMETSP1061-20121228|8297_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 2375.80
//
Query:       MMETSP1061-20121228|8301_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-28   95.0   0.0    9.8e-28   94.6   0.0    1.2  1  TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit
    3.9e-10   37.5   0.0      7e-10   36.7   0.0    1.4  1  TIGR02222 chap_CsaA: export-related chaperone CsaA
    2.1e-07   27.4   0.3    2.8e-07   27.0   0.2    1.1  1  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00399  metG_C_term: methionine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   7.1e-31   9.8e-28      16     138 ..      53     183 ..      41     184 .. 0.88

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 7.1e-31
   TIGR00399  16 kkekkkeeekaeeekkeeitiddfekvdlrvakvkkaerveksdkLlkLklDlGeek.rqvvsGiaeaYtpeeLvgkkvivvaNLkPaKlfGvkSeGmilaaeddgk.......dlallspdkevkaGerv 138
                 ++e+++ +ek ++++ + +   d +k+d+rv+ ++k+ + e++dkL+  ++ +Gee+ r++ sG++++Yt e++vgkkv+v+aNLk +K++G  S+Gm+l a ++g        ++ llsp + + +G r+
  MMETSP1061-20121228|8301_1  53 ATEAEDVAEKPKKKAPPPPPAIDVSKLDIRVGVIEKCWEHEEADKLFCEEINVGEEEpRKIASGLKAHYTSEDMVGKKVLVLANLKSRKMVGFPSHGMVLCAVKEGAaedgsedVVELLSPPEAAVPGDRI 183
                 456666666777777777788899****************************************************************************8877665555666789999999999999998 PP

>> TIGR02222  chap_CsaA: export-related chaperone CsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   5.1e-13     7e-10       3     106 ..      75     183 ..      73     184 .. 0.78

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 5.1e-13
   TIGR02222   3 dfekvdlrvGriveaedfpkarkPayklkvdlGeelGvkkssaqitklykkeelvgrlvvavvnfppkriaglksevlvlGvide.......egevvllqpdrevklGtkv 106
                 d +k+d+rvG i +  ++++a k  +  ++++Gee   +k ++ + ++y++e++vg++v++  n+ ++++ g+ s  +vl + +e       e+ v ll+p +    G+++
  MMETSP1061-20121228|8301_1  75 DVSKLDIRVGVIEKCWEHEEADKL-FCEEINVGEEE-PRKIASGLKAHYTSEDMVGKKVLVLANLKSRKMVGFPSHGMVLCAVKEgaaedgsEDVVELLSPPEAAVPGDRI 183
                 679******************996.6779****665.56666679999****************************99996544211111214445677777766667665 PP

>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.2   2.1e-10   2.8e-07      45     144 ..      80     177 ..      73     187 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 2.1e-10
   TIGR00472  45 gvvvGkvlevekhPnadkLkvckVdigekellqivcgaknveagkkVvvAlegAkLpnglkIkksklrGveSeGM.lCSleELgleeeklsdgiivLd...eda 144
                  + vG ++++ +h++adkL   ++++ge+e+++i +g k +   +   v ++  +L+n   +k++k+ G +S+GM lC+ +E   +e+  s+++++L    e+a
  MMETSP1061-20121228|8301_1  80 DIRVGVIEKCWEHEEADKLFCEEINVGEEEPRKIASGLKAHYTSED-MVGKKVLVLAN---LKSRKMVGFPSHGMvLCAVKEGA-AEDG-SEDVVELLsppEAA 177
                 389**********************************998877754.34566666776...9*************669999844.4444.35555554254555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1128.73
//
Query:       MMETSP1061-20121228|8294_1  [L=709]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.6e-210  696.4   0.9   8.7e-210  696.2   0.6    1.0  1  TIGR00232 tktlase_bact: transketolase
    7.2e-22   75.4   0.7    2.7e-10   37.2   0.0    3.1  3  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
    1.1e-11   41.3   1.7    1.1e-08   31.4   0.1    2.9  3  TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type
    1.8e-08   31.4   0.2    4.2e-08   30.3   0.1    1.5  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    8.7e-08   29.3   0.1    1.7e-07   28.3   0.1    1.4  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
     0.0001   18.5   1.3    0.00087   15.5   0.1    2.4  3  TIGR03186 AKGDH_not_PDH: alpha-ketoglutarate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  696.2   0.6  1.3e-212  8.7e-210       3     650 ..      53     707 ..      51     709 .] 0.93

  Alignments for each domain:
  == domain 1    score: 696.2 bits;  conditional E-value: 1.3e-212
   TIGR00232   3 lvnairlLavdaiekaksGhpGaplGlapiaevlwkkflklnPtnpkWinRDRfvlsaGhgsmllYsllhllGydlsiedlkqfrqlesktpghPel....aetagvevttGPLGqGianavGlalaektlaaefnkesaeivdhytyvlvGDGdlqeGisseaaslaGhlkLgkLivlyDsnkisidgeveksfsedvkkRfeaygWevlevedgedleeikkaiekakksk.dkPtlikvktiigfgspnkegteevhgaplkeeevkllkkklglnyee.Fevpqevydffkkevkergekaeeewneklakykkkypelakeferrl.sgelpad.yekklkefkakkkalatRkaskevlnalakelpellggsaDlarsnltklkesk....elkenalgnyiryGvRefamgaimngialhGglkpygatFlvFvdYakpaiRlaaLmklkvi.yvythDsigvGeDGpthqpveqlaslRaipnlsvwRPaDeketaaayklalesqdaptvlilsRqnlpqle....esslekvlkGgYvlkdskn.PdiiliatGsevelaveaakkLakenikvrvvslpsidlldkqdeeYresvlpanvt.llaieasaaleWykyaklegavlgidsfGesakgdkvfekfgFtvenvvakak 650
                 ++n  r La+d+i  a+sGh G+plG+a+i  +l+ + +++  ++p+WinRDRf+lsaGhgsm lYs l l+G+dl++e++k+frq +s tpghPe+    ++t+g+e ttGPLGqG++navG+a +ek+ aa +n ++++i+dh++y+l GDG+ qeG+s eaa +a h kL++LivlyD n++++d   e++ sed+ +R+eaygWe     dg+dl+++++ai  ak+s+  kP +ik++tiig+g  + egt+++hg + +   v+++kk++gl   e + v++ + d f  +v+++++++ +ew++++a+ k++ p+lak++e ++ ++ +pa+   k++++     +a atR + ++v++++++ +p++++gsaDl  s+   ++e +     ++++ +g+++ +G+Re+amg+imng+a hG +k  g+tFlvFvdY +p++R+a L++l ++ y++thDsigvGeDGpthqpve+++ lR+ipnl v+RPaD++et aa+  + +++d+pt+li+sRqn+ q +     +  e +lkG+Yv k+  +  d+i+iatGsev+ a++a++ +      +rvvs+p+++++++q++eY+esvlp++ t ++a+ea+ ++ Wykya ++   +g+d+fG sa+gd v+ ++g t en++a++ 
  MMETSP1061-20121228|8294_1  53 AANEARGLAMDSIAAAHSGHMGLPLGAAEIGATLYGQEMQYHAADPTWINRDRFILSAGHGSMFLYSWLNLAGFDLPMEEVKNFRQHHSMTPGHPEFpsseHNTPGIECTTGPLGQGVSNAVGMAASEKMAAAVYNTDDHKIFDHHIYALAGDGCFQEGVSAEAAAFAAHEKLDNLIVLYDANEVTLDKMAEYTQSEDILMRYEAYGWETYDI-DGHDLDAVQEAISSAKASNnGKPKFIKCNTIIGKGMEETEGTNAAHGEA-GVPYVDNAKKNIGLPEGEkWFVSEGTRD-FFGDVQKKNKDTYDEWQSTYAAWKEANPDLAKQLEDAVaDNTMPAEdMIKEIAA--MGPEAEATRVSGNKVIQEISRLVPNYVSGSADLHGSTRNYINEGGnfgsGFDKTYSGKNLYFGIREHAMGSIMNGFAFHGLFKISGSTFLVFVDYFRPTVRVASLSELGAVsYILTHDSIGVGEDGPTHQPVETVSGLRVIPNLDVYRPADAEETVAAMAHSATRKDGPTALIFSRQNIDQNNdvdyMARREGALKGAYVAKKETEdLDLIVIATGSEVQHALKATADM----PGARVVSMPCVEVYERQSAEYKESVLPSSCTkRVAMEAGVSDIWYKYASKV---VGVDKFGFSAPGDIVMTEYGMTPENLAAEIA 707
                 5788899*****************************************************************************************955556789********************************************************************************************************9766.****************98626**************************87.677899*******977666999999998.6679******************************99872456665413333333..357889******************************99999887755656788999999************************************************97544********************************************************************98844455566889******9877666****************997665....579**************************999****************998...**************************99876 PP

>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   1.5e-09     1e-06      13     174 ..      45     238 ..      30     245 .. 0.74
   2 !    9.7   0.0   8.3e-05     0.057     245     288 ..     265     310 ..     252     326 .. 0.82
   3 !   37.2   0.0   3.9e-13   2.7e-10     410     517 ..     514     626 ..     442     642 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.5e-09
   TIGR00204  13 lsideleklsdelrekllesvsa.sgGhlasglGvveltvalh...kvfd......tdkdkliwdvghqa...yahklltGr...reelstlrqkkGla.gfpkrseseydv....lsaGhsstsisaglGiav....aa......elkgadekvvaviGdGaltaGmalealnhaGdlkkdllvilnd.nems 174
                   +  l+  ++e r   ++s++a  +Gh++  lG+ e+  +l+   ++++      +++d++i   gh +   y+   l+G    +ee++ +rq++ ++ g+p    se++      ++G     +s ++G+a+    aa      ++k  d+++ a+ GdG+   G+  ea   a ++k d l++l d ne++
  MMETSP1061-20121228|8294_1  45 DTKTALQTAANEARGLAMDSIAAaHSGHMGLPLGAAEIGATLYgqeMQYHaadptwINRDRFILSAGHGSmflYSWLNLAGFdlpMEEVKNFRQHHSMTpGHPEFPSSEHNTpgieCTTGPLGQGVSNAVGMAAsekmAAavyntdDHKIFDHHIYALAGDGCFQEGVSAEAAAFAAHEKLDNLIVLYDaNEVT 238
                 4567899999**********975279*************99984333454222333478*********9866688888999633379999*****999735888888999863333578899999*******9722222211111122333556779**********************998877777647765 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 8.3e-05
   TIGR00204 245 vdGhdlselietlknakklk..gPvllhvktkkGkGyklaekdtig 288
                 +dGhdl+++ e++  ak  +  +P+++  +t  GkG + +e+ +  
  MMETSP1061-20121228|8294_1 265 IDGHDLDAVQEAISSAKASNngKPKFIKCNTIIGKGMEETEGTNAA 310
                 9***********99888654227***************99987654 PP

  == domain 3    score: 37.2 bits;  conditional E-value: 3.9e-13
   TIGR00204 410 draGivGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrGnavg...veltee.ekleiGksellrkge..dilllgfGtlveealevaeelk 517
                 d  G vG+dG+thq +  +s lr iPnl ++ P d +e+  ++  +   ++gp+al + r n      v+ + + e    G    +++ e  d+++++ G+ v++al+++  + 
  MMETSP1061-20121228|8294_1 514 DSIG-VGEDGPTHQPVETVSGLRVIPNLDVYRPADAEETVAAMAHSATRKDGPTALIFSRQNIDQnndVDYMARrEGALKGAYVAKKETEdlDLIVIATGSEVQHALKATADMP 626
                 5555.8*****************************9999888888888889*********997541115666663555555555555444235788999*******99887665 PP

>> TIGR00759  aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.1   1.5e-11   1.1e-08     105     262 ..      78     240 ..      43     244 .. 0.80
   2 !    6.6   0.1   0.00048      0.33     359     406 ..     266     313 ..     253     324 .. 0.87
   3 ?    0.3   0.0     0.038        26     641     740 ..     529     622 ..     515     635 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.5e-11
   TIGR00759 105 ssyasaaelyevgfnhffraksekeggdlvffqghaaPGvyarafleG.rlteeqldnfrqeva.gdGlssyPhPklmPdfwqfptvsmGlGPinaiyqarflky...lenrglkdtsdqkvyaflGdGemdepeskgaitlaarekldnlvfvincnlqrld 262
                  + +  a+ly    ++     +  +    +   gh +  +y+   l G  l  e+++nfrq ++ + G + +P         + +t+ +G G  na+  a   k    + n   ++  d+++ya+ GdG   e  s  a+ +aa+ekldnl+ + ++n   ld
  MMETSP1061-20121228|8294_1  78 GAAEIGATLYGQEMQYHAADPTWINRDRFILSAGHGSMFLYSWLNLAGfDLPMEEVKNFRQHHSmTPGHPEFPSSEHNTPGIECTTGPLGQGVSNAVGMAASEKMaaaVYNTDDHKIFDHHIYALAGDGCFQEGVSAEAAAFAAHEKLDNLIVLYDANEVTLD 240
                 445555666655555444444444555578889**********999995699**********99899*******99998899***************99976665111556666677799**********************************999987777 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.00048
   TIGR00759 359 Gghdvkkvyaaykaake.akGkptvilaktikGyglgeaaearnvahqv 406
                  ghd   v  a  +ak+  +Gkp  i  +ti G g+  ++e+ n+ah  
  MMETSP1061-20121228|8294_1 266 DGHDLDAVQEAISSAKAsNNGKPKFIKCNTIIGKGME-ETEGTNAAHGE 313
                 69**********99986257****************8.789*****965 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.038
   TIGR00759 641 hslvlaavvPnviaydPafayevaviledglrrmygeqedvfyyvtvlnenyeqPalPeeaeegilkGlyrfeeaeeekakekvqllgsGailrevreaa 740
                 ++     v+Pn+  y Pa a e    + +++ r  g    +f    ++ +n +        +eg lkG y  ++++e+       ++++G+ ++++++a+
  MMETSP1061-20121228|8294_1 529 ETVSGLRVIPNLDVYRPADAEETVAAMAHSATRKDGPTALIFSRQNIDQNNDVD---YMARREGALKGAYVAKKETEDL---DLIVIATGSEVQHALKAT 622
                 555555799*************99999999999999888887665554444333...3356889999999888777763...456788888888887764 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.1   6.2e-11   4.2e-08     123     244 ..     165     294 ..     145     296 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 6.2e-11
   TIGR03181 123 pigtqvlhAaGvAlalklkg..........ekevavayiGdGgtsegdfyealnfAavfkapvvfvv.qNNqwAISvprskqtaaktlaqkavaagipgvqvDGnDvlAvyevvkealekArkgegPtLiEav 244
                 p+g+ v+ A+G+A + k+             ++ ++a+ GdG   eg   ea  fAa  k+   +v+   N+      +++ t+++++  +  a+g +   +DG D+ Av e++++a  kA ++++P +i + 
  MMETSP1061-20121228|8294_1 165 PLGQGVSNAVGMAASEKMAAavyntddhkiFDHHIYALAGDGCFQEGVSAEAAAFAAHEKLDNLIVLyDANEVTLDK-MAEYTQSEDILMRYEAYGWETYDIDGHDLDAVQEAISSA--KASNNGKPKFIKCN 294
                 78999*********999999888887765448999*************************98766651667777765.566788888***************************987..67888889999765 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.1   2.4e-10   1.7e-07     112     234 ..     166     296 ..     153     304 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 2.4e-10
   TIGR03182 112 vgaqvplatGlafaekyk..........kedevtlaffGdgavnqGqvyEslnlaalwklPvifvi.ennkyamGtaverssaekdlakkgesfgikglevdGmdvlavreaakeavervragkgPvllelkty 234
                 +g++v+ a+G+a +ek+             d+  +a+ Gdg  ++G   E+  +aa  kl  + v+ + n+ ++       ++++d+ ++ e++g +++++dG d+ av+ea+++a   + ++ +P ++ ++t 
  MMETSP1061-20121228|8294_1 166 LGQGVSNAVGMAASEKMAaavyntddhkIFDHHIYALAGDGCFQEGVSAEAAAFAAHEKLDNLIVLyDANEVTLDKMA-EYTQSEDILMRYEAYGWETYDIDGHDLDAVQEAISSAK--ASNNGKPKFIKCNTI 296
                 6889999999999999888888775432224557899***********************877666166888887655.566778999************************99875..667889999999985 PP

>> TIGR03186  AKGDH_not_PDH: alpha-ketoglutarate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.3e-06   0.00087     132     263 ..     105     241 ..      42     265 .. 0.73
   2 ?    0.7   0.0     0.037        25     358     396 ..     265     304 ..     245     314 .. 0.83
   3 ?   -1.7   0.0       0.2   1.4e+02     632     674 ..     519     561 ..     512     630 .. 0.48

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.3e-06
   TIGR03186 132 dlvyfqphsapgvyaraflegf.lsdaqlehyrqeia.geglcsyphpwlmpdfwqfptgsmgigpinaiyqa...rfmrylqnrglartegrkvwglfgdgemdepesiaalslaarerldnlvfvincnlqrldg 263
                  ++    h +  +y+   l gf l   +++++rq  + ++g   +p         +  tg +g g  na+  a   ++   + n    +  +++++ l gdg ++e  s  a ++aa e+ldnl+ + + n   ld 
  MMETSP1061-20121228|8294_1 105 RFILSAGHGSMFLYSWLNLAGFdLPMEEVKNFRQHHSmTPGHPEFPSSEHNTPGIECTTGPLGQGVSNAVGMAaseKMAAAVYNTDDHKIFDHHIYALAGDGCFQEGVSAEAAAFAAHEKLDNLIVLYDANEVTLDK 241
                 4555566777777887788887566667888888765157888888877776677889999****999998872223344566777778889999********************************9999888875 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.037
   TIGR03186 358 rgghdvrklyaayerakk.hkgrptvilaktkkgfglgai 396
                   ghd+  +  a + ak+  +g+p  i  +t  g g+   
  MMETSP1061-20121228|8294_1 265 IDGHDLDAVQEAISSAKAsNNGKPKFIKCNTIIGKGMEET 304
                 579*********999986258***************9754 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.2
   TIGR03186 632 ggeglqhqdgtshlaaatvpncraydpafayevavivdegmre 674
                 g +g  hq   +     ++pn   y pa a e    + +++ +
  MMETSP1061-20121228|8294_1 519 GEDGPTHQPVETVSGLRVIPNLDVYRPADAEETVAAMAHSATR 561
                 5556666666666666666777777777666644444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (709 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.47u 0.13s 00:00:00.60 Elapsed: 00:00:00.46
# Mc/sec: 2034.35
//
Query:       MMETSP1061-20121228|8307_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 1006.42
//
Query:       MMETSP1061-20121228|8302_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-17   58.9   0.8    1.1e-16   58.4   0.6    1.2  1  TIGR02381 cspD: cold shock domain protein CspD
     0.0085   12.2   0.1       0.01   12.0   0.0    1.0  1  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases


Domain annotation for each model (and alignments):
>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.6   5.3e-20   1.1e-16       3      57 ..       4      57 ..       1      68 [. 0.87

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 5.3e-20
   TIGR02381  3 iGivkWfnnakGfGfisaegkdeDifahystiqmDGYrtLkaGqkvqfevvqgek 57
                +G+vk+f n kGfGfi++    eD+f hy  i++DGY+tL  G +v+f+ + +++
  MMETSP1061-20121228|8302_1  4 QGTVKFFCN-KGFGFITPADGTEDLFVHYTHINKDGYKTLNEGESVTFDKQFDDQ 57
                69*****99.9*************************************9765544 PP

>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0     5e-06      0.01      17      74 ..       3      65 ..       1      67 [. 0.77

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5e-06
   TIGR00358 17 vkGvvka.tekgfgFlrvddddkkdyfippeqlkk.....vlhGDlvlaqilskkekerreaev 74
                ++G+vk   +kgfgF+ + d   +d+f+++ +++k       +G+ v++ ++  ++k++ +a+ 
  MMETSP1061-20121228|8302_1  3 LQGTVKFfCNKGFGFITPAD-GTEDLFVHYTHINKdgyktLNEGESVTFDKQFDDQKQKWSATN 65
                6899985379*******997.6789999998886422221567999999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 890.93
//
Query:       MMETSP1061-20121228|8308_1  [L=1217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-233  776.2   0.1   1.2e-232  773.2   0.0    1.9  2  TIGR00592 pol2: DNA polymerase (pol2)


Domain annotation for each model (and alignments):
>> TIGR00592  pol2: DNA polymerase (pol2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    0.6   0.0    0.0055        23     334     360 ..      61      87 ..      41      97 .. 0.83
   2 !  773.2   0.0  2.8e-236  1.2e-232     398    1176 .]     145     960 ..     136     960 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.0055
   TIGR00592 334 kadtevsvcvqvkgieRelfllpregk 360
                  +++ vs+c  vkg  R+lf+lpr++ 
  MMETSP1061-20121228|8308_1  61 ATQKFVSCCAVVKGNLRNLFVLPRKIS 87 
                 456689******************975 PP

  == domain 2    score: 773.2 bits;  conditional E-value: 2.8e-236
   TIGR00592  398 kevekkyefeapdidvpe.sseylevkyelkkekaelealpsdlkgetvshvfgsntgslerfllqrkikgpcwLevkkpdekeikraswckvevavvkpknvekikdkt...pPplvvLsfsvk.slnpkiirneivsiaallhrefaldk...aapeeafevelcv..........ltrpkdvsfpldlkaevkkkvpakveklakerallkkflakvkkiDpdvivghdlqqvelkvlanrinelkiPtwskiGRLrrs.....eklGkr....flertvGRliCDversakelircksydLselvqqvlkkerveididnlremYeesesllklleetikdakfileimcelnvlpLalqitniaGnimsrtLqGgRseRneflLLhaFyennyivPDkkivrkqqklgdedeeidgtvkskkaaYaGGLvlePkkGlydkyvLllDFnsLYPsiiqefniCFttvq................qkvdeDelPelPdseveqGiLPrelkkLverRkevkklmkadldPdlrlqydiRqkaLkLtanSmYGclGysksrfyakplAalVTakGReilentkklvekmn.leVvYgDTdsimintnsdkl...eevfKigkklksevnkkyklleldidgvfkkllLlkKKkYAalkvekdsegnlvtklevkGLdivRRdwselakevgkkvldtiLs.dkdveeaveevkevlekikekvlenevplekfeinkqltkdpkdYpdkkslPhvqValrlnkrggrkvkaGdvvsyvilk.........dgs.nlsakqrayaleelkkkennLilDtqyylekQilpvvarllE 1176
                  k v +ky+f+ p  +vp  s  y++v y+ k    + + ++  + g+ v+++  +    le fll+r  +gp w+ +  pd +e   +swc+ e  v+ pk+v+  + +    pPp+v++ +++k +lnp++++neivs++a  h+++ ld    aape   +v l+           + +    +fp dl  e++ k+p +++ + +erall++ + ++   Dpdv vgh +    + vl+ r +e k+  wsk+GR r++      ++ ++    + +  +GRl+CD   sa+e +    y L +l +  lk++r  i+  +  + + +se ++ l  +t++da+++ ++ ++l+vlpL++q+tniaGn +s+tL+  R++R e+lLLh+F++  y+vP+kk           +e+++      ka+YaGGLvl+PkkGlyd ++LllDFnsLYPs+iqe+n+CFttv+                q++++  lP lPd + e+G+L r +++Lv+rR++vk +mk++ +P++    di+qka kLtanSmYGclG+s+srfya+p+AalVT  GR+ l+ t + +++   leV+YgDTdsimint + +      v K+g+++k+evnk+yk lel+idgvf  +lLlkKKkYAa+++e++ +g+     e kGLd+vRRdw+  +k++g+ vld+iLs ++++e  + ++ + le++++ + ++e+pl k++i+k l+k pkdYpd++ lPhv+Va+ + k+ +r    Gd ++yvi++         d++   sa++ra +++e  +++  L +D ++yl +Qilp+v rl+E
  MMETSP1061-20121228|8308_1  145 KVVDRKYAFDDP--EVPRdSTSYMKVVYDAK--YPSPDPELCAKGGQYVAKILNGRATTLETFLLKRGLMGPGWIRISDPDPSERS-VSWCALELQVLSPKQVKRLESNPprpPPPVVAVTLKLKtVLNPRTSKNEIVSVSAVCHKRVLLDTgtdAAPELMTQVSLIRpihhehehdgGIHRGMAKFPRDLDKEIAAKMP-QLKSMPNERALLSCLVTQIGNWDPDVLVGHHAWGHDIPVLLSRCVEHKVRMWSKLGRHRQTdlpskTHFSSGkdwaIAQALSGRLLCDTYLSAQEHLSETTYSLTNLAKTQLKTDRFDIEPMDTPQYFCKSETIVALARHTLHDAQLVQRLLFKLQVLPLTKQLTNIAGNLWSQTLKSNRAGRTEYLLLHEFHRLKYLVPEKKSR---------NETAS-----GKAKYAGGLVLDPKKGLYDTFILLLDFNSLYPSLIQEYNLCFTTVDdwavvhqqqmeaakenQNAEATALPPLPDESQETGVLARVIRNLVQRRRQVKGMMKKESNPEKYDELDIKQKAFKLTANSMYGCLGFSNSRFYAQPIAALVTSMGRQTLQRTVEIAQSTVgLEVIYGDTDSIMINTRISDTnglSTVRKLGEQVKKEVNKLYKTLELEIDGVFRTMLLLKKKKYAAVTIEQNRNGEIKLGREEKGLDLVRRDWCVQSKDTGHYVLDQILStEQEKEVTISKILDNLEQLAQTMRNGELPLAKYVITKGLSKHPKDYPDGRALPHVHVAKMMIKN-NRRLTVGDHIPYVICEplesdekssDKKlSKSAAERARHPDEIVRSNGALKPDIEWYLTQQILPPVSRLCE 960 
                  67899*******..88762678*******55..4444555566789**************************************99.99************99999988788899***********************************964336777666655443111111111122333799******99999999.589*****************99**************************************99876655655566655555***************************************9988888888************************************************************************9864.........44554.....49**************************************************9888776665555556******************************************************************************************************************9988766789***********************************************************************************946778889*******************************************************9.8*******************999974432557889***********999*********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.13s 00:00:00.70 Elapsed: 00:00:00.51
# Mc/sec: 3149.62
//
Query:       MMETSP1061-20121228|8304_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 766.55
//
Query:       MMETSP1061-20121228|8312_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-14   51.4   0.0    3.6e-14   51.0   0.0    1.1  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    1.8e-12   44.9   0.0      5e-12   43.4   0.0    1.7  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    4.9e-10   37.1   0.0    1.1e-09   36.0   0.0    1.5  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    7.8e-06   23.3   0.0    1.2e-05   22.7   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    6.2e-05   20.2   0.0      9e-05   19.7   0.0    1.1  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    0.00013   18.5   0.0    0.00017   18.0   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
     0.0068   13.9   0.0     0.0096   13.4   0.0    1.2  1  TIGR00740 TIGR00740: putative methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.0   0.0   6.2e-17   3.6e-14      35     176 ..     147     306 ..     132     308 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.0 bits;  conditional E-value: 6.2e-17
   TIGR02072  35 pakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls............nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafstfgketlkElrqlfkqv....ea.hglrflsleelkallkke.fellkl 176
                  + v d+ c tG++tr l+k+ +  +++  D se ml  a+++++            +++ +  +++++p+ ++s+D+  + +a++   dl+++ +e++rvlkpgG    +tf +  +  + +l ++     ++   + f s+++lk+l+ k  fe+ k+
  MMETSP1061-20121228|8312_1 147 SSVVVDMSCATGLFTRRLAKSGNYGRVLGCDYSEAMLLEARRRINadpelspkslktSLDLVRLSVSEIPMKTESVDCLHAGAAMHCWPDLDAAASEIYRVLKPGGRYFATTFLSSYFSNVASLDDRTgasvSQqAFQYFDSIHTLKDLVVKGgFEESKV 306
                 46799***************************************************999*******************************************************9988877776666666687768899999******999988888765 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   8.5e-15     5e-12      38     144 ..     145     259 ..      99     272 .. 0.85

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 8.5e-15
   TIGR01934  38 ekeekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkkakek.......eeanvefieadaeeLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilef 144
                 + ++ v+D+ + tG ++ +lak+ +  +v+g+D se+mL  a++++++         +++++ +  ++ e+p++ +s+d++  +  +    d + a +e++RVlkpggr +   f
  MMETSP1061-20121228|8312_1 145 NPSSVVVDMSCATGLFTRRLAKSGNyGRVLGCDYSEAMLLEARRRINADpelspksLKTSLDLVRLSVSEIPMKTESVDCLHAGAAMHCWPDLDAAASEIYRVLKPGGRYFATTF 259
                 467889***************************************876442222124567899999******************************************9876665 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   1.8e-12   1.1e-09      48     147 ..     149     254 ..     141     267 .. 0.87

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 1.8e-12
   TIGR02752  48 kaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkda.kl......envelvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkv 147
                  ++d+ c t+ ++  la++ g+ g+v g d+se ml  +++++++  +l      + ++lv     e+p++ +s d +  g  +   pd      e++rv+kpgg+ 
  MMETSP1061-20121228|8312_1 149 VVVDMSCATGLFTRRLAKS-GNYGRVLGCDYSEAMLLEARRRINADpELspkslkTSLDLVRLSVSEIPMKTESVDCLHAGAAMHCWPDLDAAASEIYRVLKPGGRY 254
                 679*************986.****************999999975423311111257899*********************************************85 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   2.1e-08   1.2e-05      57      99 ..     149     193 ..     131     216 .. 0.89

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2.1e-08
   TIGR02021  57 kvlDAGCGtGllsielAkrGa..ivkavDiseklvelarkraeke 99 
                  v+D  C tGl++ +lAk+G   +v + D se+++ +ar+r ++ 
  MMETSP1061-20121228|8312_1 149 VVVDMSCATGLFTRRLAKSGNygRVLGCDYSEAMLLEARRRINAD 193
                 699*****************7558***************998765 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.5e-07     9e-05      51     154 ..     148     259 ..     129     270 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.5e-07
   TIGR01983  51 lkvlDvGcGgGllseslarlgae..vtgiDlseelievAklhakkdplk.......kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilflsti 154
                   v+D+ c  Gl++  la++g    v g D se ++  A+   ++dp +       +++    sv e+  + +es D + a   +   +dl++   e+ ++lkpgg  f +t 
  MMETSP1061-20121228|8312_1 148 SVVVDMSCATGLFTRRLAKSGNYgrVLGCDYSEAMLLEARRRINADPELspkslktSLDLVRLSVSEIPMK-TESVDCLHAGAAMHCWPDLDAAASEIYRVLKPGGRYFATTF 259
                 5699*****************9888**************9999988866677787889999999****999.567**********************************9997 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.9e-07   0.00017     281     347 ..     145     213 ..     130     229 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.9e-07
   TIGR04074 281 sgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldr..lsekqrervellqsslt 347
                   +  v+D+ c  g   ++L+++ +  +++g+d s + L +a+rr++ d    +++ ++ ++l++ s+ 
  MMETSP1061-20121228|8312_1 145 NPSSVVVDMSCATGLFTRRLAKSGNYGRVLGCDYSEAMLLEARRRINADPelSPKSLKTSLDLVRLSVS 213
                 4556799***************************************98742135556777888877765 PP

>> TIGR00740  TIGR00740: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.6e-05    0.0096      52     124 ..     145     221 ..     130     264 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
   TIGR00740  52 tpkslvydlGcslGaatlsvrrniqqdevkligidnsqpmlerareklkaykaaip......vevlcndireveikeas 124
                 +p s v d+ c++G +t  + +  +    +++g d s++ml  ar++++a  +  p      ++++   + e+ +k  s
  MMETSP1061-20121228|8312_1 145 NPSSVVVDMSCATGLFTRRLAKSGNY--GRVLGCDYSEAMLLEARRRINADPELSPkslktsLDLVRLSVSEIPMKTES 221
                 48899**********99888877776..689*****************9865544411111144444445555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1510.54
//
Query:       MMETSP1061-20121228|8305_1  [L=1766]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-165  549.6   0.0    1.2e-87  292.8   0.0    4.1  4  TIGR02390 RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
    6.6e-63  210.7   0.0    1.1e-35  121.2   0.0    2.2  2  TIGR02389 RNA_pol_rpoA2: DNA-directed RNA polymerase, subunit A''
    1.9e-56  189.3   0.1    1.7e-27   93.5   0.0    6.3  6  TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
    3.1e-24   83.3   0.0    7.4e-13   45.7   0.0    2.2  2  TIGR02387 rpoC1_cyan: DNA-directed RNA polymerase, gamma subunit
      3e-19   65.8   2.0    2.4e-09   33.0   0.1    4.0  4  TIGR02388 rpoC2_cyan: DNA-directed RNA polymerase, beta'' subunit


Domain annotation for each model (and alignments):
>> TIGR02390  RNA_pol_rpoA1: DNA-directed RNA polymerase subunit A'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.8   0.0   8.7e-27   7.2e-24       2     135 ..      14     148 ..      13     173 .. 0.91
   2 !    5.3   0.1    0.0011      0.93     125     163 ..     227     265 ..     204     283 .. 0.80
   3 !  292.8   0.0   1.4e-90   1.2e-87     171     666 ..     358     884 ..     344     897 .. 0.83
   4 !  164.0   0.0   1.3e-51     1e-48     717     857 ..     971    1111 ..     924    1117 .. 0.87

  Alignments for each domain:
  == domain 1    score: 81.8 bits;  conditional E-value: 8.7e-27
   TIGR02390   2 kkiksikfgllsPeeirklsvvevvtadtydedGlPiegGlmdprlGvi.ePglrCktCggkvdeCpGhfGkielarPvvhvgfakeikkllratCrkCgrillkeeeieeyleklkklkeegkslaktliekiv 135
                 k+i+si+fg    e+ r  sv e++ +   d  G P+ +G+ dprlG   + +  C+tC++++ +CpGhfG+iel+ P++h    +++ +llr+ C +C +++++ +e + +++k+  l++ + ++ ++l + + 
  MMETSP1061-20121228|8305_1  14 KQIDSIQFGFYTDEDTRSRSVCEITSSMAVDPLGSPLPNGVYDPRLGPSsNDSPPCPTCSQRYATCPGHFGHIELCVPLYHPLLFSQLVELLRMKCLHCHKLTMSARELNVFKTKFLLLENGEYNKVQELGNLMA 148
                 89*********************************************75166789*************************************************************9999877777666655544 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0011
   TIGR02390 125 slaktliekivkeaakkkkCPhCgeeqkeiklekPvefy 163
                 +l ++l++++  + + +k+CPhCg+   +i+ +   +++
  MMETSP1061-20121228|8305_1 227 ELRRQLVKEVITTCKSAKSCPHCGAYSPKIRQDSSNKIF 265
                 334899*********************999988766655 PP

  == domain 3    score: 292.8 bits;  conditional E-value: 1.4e-90
   TIGR02390 171 vkltpsevrerlekipdedlkllGinpkvarPewlvltvlpvPPvtvrPsitletGerseddlthklvdiirinerlkesieagaPeliiedlWellqyhvatyfdnelpgipkarhrsgrplktlaqrlkGkeGrlrsnlsGkrvnfsartvispdPrisinevGvPeeiakeltvpervteynidelreyvknGpdklpGanyvikpdgr..rikiteekkeelaerl....epG...wvverhlidGdivlfnrqPslhrmsimghkvkvl..P.gktfrlnlavcpPynadfdGdemnlhvlqteearaeakelmkvekhilsPryGgpiiGgiqdyisgaylltvksklltkeevakilkka............klkeeleepaiekakkyytGkeifsallP.....edlnlelk.......akvskk.eackkeecesdayvviknGkllkGvidkkaigaekgklldkivkeygseaarkfldsvtklairlle.lrgltislddidiPeeakeeieeliekaekk 666
                 + + +sev+ ++ ++ +  + l  +   v  Pe   ++ +pvPP   rP ++l  G+  e      l  i++ ne l+++  +          W  lq h +  +d +          +  p  ++ q l  keG +r+ + Gkrvn+++r+vispdP+i  ne+G+P+  a +lt p+ vt++ni e+r++v++Gp ++pGa +v  pd+r    k+ ++k+e++a rl    ++G    +v r+l dGd+vl nrqP+lh+  imgh+v+vl  P +kt r++ a c  ynad+dGdemn h +q++ +raea+ ++k + + ++P  G p+ G iqd++ +   lt+++++l k e ++++ +a            ++k el  p+i+k+k+++tGk+++s+ll      +d +   +       ++ ++k   +   +  ++  v+i++G+ll+Gv+dk+a+ga +  l++ + + yg+ +a  +l+s+ +l+  +++ + g +  ++d  + +ea +  ++li+ka+++
  MMETSP1061-20121228|8305_1 358 KFMHASEVQAQVRRTWATSTVLCNYVFAVQGPEIFFVQAVPVPPNRFRPPMQL-GGMTVEHIQNGYLNSILQANESLRNNFASKNE-AQAYTTWIELQTHFNCLIDSSKDP--S---SNPNPPVGIRQLLERKEGVFRKHMMGKRVNYACRSVISPDPYIGTNEIGLPRYFAETLTYPTPVTDINIGEMRNLVERGPFQYPGARWVEFPDRRvdLSKMDDHKREAIAARLltyaKKGskpAIVGRQLRDGDMVLMNRQPTLHKPGIMGHEVRVLhdPtQKTIRMHYANCNTYNADYDGDEMNCHFPQSDLGRAEAEYIAKTDLQFIAPTDGAPLRGLIQDHVVAGVKLTKRDTFLDKWEYQQLMFAAlvslprlelirsDAKIELLPPVILKPKPMWTGKQVISTLLNhlrkgNDRDSPGRgpmpgisTERKAKtAGAAFGTNLEEHLVIIRDGELLRGVLDKAAYGATDFCLVHAVYEAYGPAKAGLLLNSLGRLFTSYIQfYSGHSCRMEDLILTKEADQTRRQLINKAYNN 884
                 4467888999999999999999999999999*********************9.59999999999**************9976654.445679*************87543..2...234566789999999*****************************************************************************98754456667778988888744443443337*********************************553369*****************************************************************************9999987654111111111111334444456999**************996222222333333311111102222221233445667888999***************************************************84689************************9875 PP

  == domain 4    score: 164.0 bits;  conditional E-value: 1.3e-51
   TIGR02390  717 eneavilartGargsllnitqvaalvGqqsvrGerikrGykertlphfkkgdieakarGfvrssfkkGlePieyffhaagGreglvdtavrtsqsGylqrrlvnalqdlkveedgtvrdtvgvliqlkyGedgvdpaksdh 857 
                   n+  i+  tGa+gs++n +qv++ +Gqq++ G+r+ r  + rtlp f   d++++a Gfv + f +G++P ey+fh+++Greglvdtav+ts+sGylqr lv+ l++lkv++d tvr+  g ++q+ yGedg+dp+k+++
  MMETSP1061-20121228|8305_1  971 ANTFGIMCGTGAKGSIVNQSQVTCALGQQALEGRRVPRLASGRTLPSFAPYDVNPRADGFVMDRFLTGIRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKHLEELKVNYDYTVRNGEGGVVQFLYGEDGLDPTKASY 1111
                  56677*************************************************************************************************************************************975 PP

>> TIGR02389  RNA_pol_rpoA2: DNA-directed RNA polymerase, subunit A''
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.1   3.1e-28   2.6e-25      10     130 ..    1279    1393 ..    1265    1409 .. 0.80
   2 !  121.2   0.0   1.3e-38   1.1e-35     175     366 ..    1569    1765 ..    1542    1766 .] 0.86

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 3.1e-28
   TIGR02389   10 leekvkkeevskee.kleeivkrvekeyleslidpgeavGivaaqsiGePgtqmtlrtFhyaGvaelnvtlGLPRlieiv.darktpstPlmtiyledeyekdrekaeevakkieetklekva 130 
                  l++++k     +++ + ++  + v ++++++l+dpgeavG +aaqsiGeP+tqmtl+tFh aG a  nvtlG+PRl ei+  a ++ +tP+m++ l +  ++   +a+++ +   + +l++++
  MMETSP1061-20121228|8305_1 1279 LKKAMK-----SNNlANDDFDSLVAAKFSSALVDPGEAVGAIAAQSIGEPSTQMTLNTFHLAG-AGANVTLGIPRLREIImTASRELKTPTMSVPLYEVITE--TQATKLTRTFTKLTLDELI 1393
                  333333.....333255566688999*************************************.578***********86479************9887766..5677777777777777665 PP

  == domain 2    score: 121.2 bits;  conditional E-value: 1.3e-38
   TIGR02389  175 edveestleiklke..eslk...ellklkekiknikikGikgikrvvvrke.kedeyvllteGsnlkevlklegvDktrtttndikeieevlGieaaReaiieeikkvleeqGLdvdiRhlllvaDlmtadGevkqigRhGisgekasvlaRaaFevtvkhLldaavrGevdelkgvveniivgkpirlGtGsvklvm 366 
                  +d++ +t++i++ +  +s +    + ++++   ++ ++  k+i ++ v++e  +   +l+t G n+ e+ kle vD+ r ++ndi  ++   G+eaaR+ i++ i++v+   G++vd Rhl l+aD mt+ G   ++ R+G+  e +s++   +Fe t + L +aa++G +d++++   ni+vg+pir GtG+ +l++
  MMETSP1061-20121228|8305_1 1569 IDMKTNTIQIQPLRvdPSSRpllMIGLVEKAASKTLVRSKKNIDQAFVNEEeDGRGRCLQTAGINFTEMWKLESVDHSRLMSNDIWAVRCSYGVEAARNTIVNQIRSVFGVYGIEVDPRHLSLIADYMTFGGDYTPMNRTGMR-ETSSPFLQMSFETTAQFLTQAALTGGSDKMNSPSANIVVGRPIRHGTGAFSLLV 1765
                  366666677663322366662213345566678899999**********994555789***********************************************************************************86.6799*********************************************99876 PP

>> TIGR02386  rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0     0.014        12      84     194 ..      83     202 ..      79     217 .. 0.62
   2 !   93.5   0.0   2.1e-30   1.7e-27     176     498 ..     348     701 ..     340     720 .. 0.82
   3 !   24.6   0.0   1.3e-09   1.1e-06     685     775 ..     972    1082 ..     957    1095 .. 0.84
   4 !   46.4   0.0   3.5e-16   2.9e-13     873     928 ..    1304    1356 ..    1246    1401 .. 0.86
   5 !    1.9   0.0    0.0094       7.7    1003    1039 ..    1660    1696 ..    1637    1698 .. 0.85
   6 !   11.6   0.0   1.1e-05    0.0092    1095    1142 ..    1713    1760 ..    1705    1763 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.014
   TIGR02386  84 mghielaaPvahiWylkevP..srigll....lditakelekvlyfekyvvvdegetkl.ekkevldeeeykevleeygdkfkakiGaeaikelle....kidlekeaeklkeelkeakekq 194
                  ghiel +P+ h  ++ ++    r+  l    l ++a+el+  ++ +k++++++ge ++ ++   l  + ++ev+e  g++   ++ + a ++ l+     + +++++e+++++   +++++
  MMETSP1061-20121228|8305_1  83 FGHIELCVPLYHPLLFSQLVelLRMKCLhchkLTMSARELN--VFKTKFLLLENGEYNKvQELGNLMAARMREVKEGGGSSNGETVKSAATQKALTlhnaGMAIDALLEEIQNQYYGSNSNN 202
                 69**********87777666466776654433566666665..8999******998763133334556678888887775555555555555555400004555555566665555555433 PP

  == domain 2    score: 93.5 bits;  conditional E-value: 2.1e-30
   TIGR02386 176 lekeaeklkeelkeak.ekqkrkkllkrlevleafkesgnkPewmvleviPviPpelrPlvqldggrfatsdlndly.rrvinrnnrlkrllelkaPeiivrnekrllqeavdalfdngrrkkpvkgknkrplkslsdmlkGkqGrfrqnllGkrvdysgrsvivvGPelklyqvGlPkkmalelfkPfiikrlve................................kelaaniksakkliereddevwdvleevike.rPvllnraPtlhrlgiqafePklve...GkairlhPlvcaafnadfdGdqmavhvplskeaqaearvlllasknilnpkdGkpivvPsqdivlGlyyltke 498
                  e+++++ k+++ +a+  ++++++      vl ++  + + Pe   ++ +Pv P   rP +ql g  ++   + + y   +++ n+ l++  + k            lq   ++l+d ++       +n  p   + + l  k+G fr+ ++Gkrv+y+ rsvi   P +  +++GlP+  a +l  P  +  +                                   +   +  +a+ l  +++    +++ + +++   vl+nr Ptlh+ gi   e ++++    k+ir+h   c+++nad+dGd m  h p s    aea  +  +  + ++p+dG p+    qd v+    ltk 
  MMETSP1061-20121228|8305_1 348 AEAKVNTAKDKFMHASeVQAQVRRTWATSTVLCNYVFAVQGPEIFFVQAVPVPPNRFRPPMQLGG--MTVEHIQNGYlNSILQANESLRNNFASKNE-AQAYTTWIELQTHFNCLIDSSKDP--S--SNPNPPVGIRQLLERKEGVFRKHMMGKRVNYACRSVISPDPYIGTNEIGLPRYFAETLTYPTPVTDINIgemrnlvergpfqypgarwvefpdrrvdlskmDDHKREAIAARLLTYAKKGSKPAIVGRQLRDgDMVLMNRQPTLHKPGIMGHEVRVLHdptQKTIRMHYANCNTYNADYDGDEMNCHFPQSDLGRAEAEYIAKTDLQFIAPTDGAPLRGLIQDHVVAGVKLTKR 701
                 55666666666655552566777788888999999999*************************76..456666555516788899999987776544.3344455669*********98654..3..4455667899************************************************9998766655455667777******************9998764444444455555666666777888877776267999****************999633369*******************************************************9999999887777765 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 1.3e-09
   TIGR02386  685 npifvmadsGarGnasqlrqlagmrGlmakpkg....................eiielpikssfreGlsvleyfisthGarkGladtalktadsGyltrrlvdvaqdvvvk 775 
                  n+  +m  +Ga+G++ +  q++   G  a                           +  +   f  G+  +ey+      r Gl+dta+kt+ sGyl r lv   +++ v+
  MMETSP1061-20121228|8305_1  972 NTFGIMCGTGAKGSIVNQSQVTCALGQQALEGRrvprlasgrtlpsfapydvnPRADGFVMDRFLTGIRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVKHLEELKVN 1082
                  777889999999999988888888887775544678888889999998885544445568999***************************************988887765 PP

  == domain 4    score: 46.4 bits;  conditional E-value: 3.5e-16
   TIGR02386  873 klveiGeavGviaaqsiGePGtqltmrtfhtGGvasasdditqGlprvkelfeark 928 
                  +lv+ GeavG iaaqsiGeP tq+t+ tfh+ G+ ++   +t G+pr++e++ + +
  MMETSP1061-20121228|8305_1 1304 ALVDPGEAVGAIAAQSIGEPSTQMTLNTFHLAGAGAN---VTLGIPRLREIIMTAS 1356
                  68999**************************998765...8*********986544 PP

  == domain 5    score: 1.9 bits;  conditional E-value: 0.0094
   TIGR02386 1003 kgieavqeylvkevqkvyrlqGveindkhievivrql 1039
                   g+ea ++ +v++++ v+ + G+e++ +h+ +i   +
  MMETSP1061-20121228|8305_1 1660 YGVEAARNTIVNQIRSVFGVYGIEVDPRHLSLIADYM 1696
                  69****************************9998766 PP

  == domain 6    score: 11.6 bits;  conditional E-value: 1.1e-05
   TIGR02386 1095 tesflsaasfqettkvltdaaikgkkdkllGlkenvilGkliPaGtGl 1142
                  t+s +   sf  t++ lt+aa++g  dk+     n+++G+ i  GtG 
  MMETSP1061-20121228|8305_1 1713 TSSPFLQMSFETTAQFLTQAALTGGSDKMNSPSANIVVGRPIRHGTGA 1760
                  56666678**************************************95 PP

>> TIGR02387  rpoC1_cyan: DNA-directed RNA polymerase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   1.4e-12   1.2e-09     222     380 ..     376     528 ..     345     543 .. 0.85
   2 !   45.7   0.0     9e-16   7.4e-13     414     518 ..     595     702 ..     575     718 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 1.4e-12
   TIGR02387 222 lrvidnfiatssraewmvldvipvippdlrpmvqldggrfatsdlndlyrrvinrnnrlarlqeilapeiivrnekrmlqeavdalidngrrgrtvvgannralkslsdiiegkqgrfrqnllgkrvdysgrsvivvgpklklyqcglpkemaielfqp 380
                   v+ n++ +   +e + ++++pv p  +rp +ql g  ++   +++ y   i + n   r +     e         lq   ++lid  +       +n  +   + +++e k+g fr+ ++gkrv+y+ rsvi   p +   + glp+ +a  l  p
  MMETSP1061-20121228|8305_1 376 STVLCNYVFAVQGPEIFFVQAVPVPPNRFRPPMQLGG--MTVEHIQNGYLNSILQANESLRNNFASKNEAQAYTTWIELQTHFNCLIDSSKDP----SSNPNPPVGIRQLLERKEGVFRKHMMGKRVNYACRSVISPDPYIGTNEIGLPRYFAETLTYP 528
                 46999******************************76..456677778888887777777877777888888888899**********99876....468888889********************************************999888776 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 9e-16
   TIGR02387 414 eevitghpvllnraptlhrlgiqafepilve...graiqlhplvcpafnadfdgdqmavhvplsleaqaearllmlasnnvlspatgkpivtpsqdmvlgsyyltaen 518
                  ++ +g  vl+nr ptlh+ gi   e ++++    ++i++h   c+++nad+dgd+m  h p s   +aea  +  +  + ++p+ g p+    qd v+    lt  +
  MMETSP1061-20121228|8305_1 595 RQLRDGDMVLMNRQPTLHKPGIMGHEVRVLHdptQKTIRMHYANCNTYNADYDGDEMNCHFPQSDLGRAEAEYIAKTDLQFIAPTDGAPLRGLIQDHVVAGVKLTKRD 702
                 5667999*******************98875233589*************************************************************9999988765 PP

>> TIGR02388  rpoC2_cyan: DNA-directed RNA polymerase, beta'' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.1e-07   0.00042     162     201 ..    1035    1074 ..    1027    1094 .. 0.86
   2 !   33.0   0.1   2.9e-12   2.4e-09     304     337 ..    1304    1337 ..    1295    1345 .. 0.90
   3 !    2.1   0.0    0.0064       5.3    1085    1123 ..    1659    1697 ..    1638    1709 .. 0.89
   4 !   11.3   0.0     1e-05    0.0085    1182    1225 ..    1717    1760 ..    1699    1764 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.1e-07
   TIGR02388  162 freGltvteyvissyGarkGlvdtalrtadsGyltrrlvd 201 
                  f  G+   ey       r Glvdta++t+ sGyl r lv 
  MMETSP1061-20121228|8305_1 1035 FLTGIRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLVK 1074
                  777888899*****************************96 PP

  == domain 2    score: 33.0 bits;  conditional E-value: 2.9e-12
   TIGR02388  304 klvdlGeavGiiaaqsiGepGtqltmrtfhtGGv 337 
                   lvd GeavG iaaqsiGep tq+t+ tfh  G 
  MMETSP1061-20121228|8305_1 1304 ALVDPGEAVGAIAAQSIGEPSTQMTLNTFHLAGA 1337
                  68****************************9885 PP

  == domain 3    score: 2.1 bits;  conditional E-value: 0.0064
   TIGR02388 1085 qeslekvqkflvnevqsvyksqGvdiadkhievivrqmt 1123
                  + ++e++++ +vn+++sv+   G+++  +h+ +i   mt
  MMETSP1061-20121228|8305_1 1659 SYGVEAARNTIVNQIRSVFGVYGIEVDPRHLSLIADYMT 1697
                  5689999***************************99998 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 1e-05
   TIGR02388 1182 isaasfqettrvlteaaieGksdwlrGlkenviiGrlipaGtGf 1225
                      sf+ t++ lt+aa+ G sd +     n+++Gr i  GtG 
  MMETSP1061-20121228|8305_1 1717 FLQMSFETTAQFLTQAALTGGSDKMNSPSANIVVGRPIRHGTGA 1760
                  55679*************************************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1766 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 1.01u 0.17s 00:00:01.18 Elapsed: 00:00:00.62
# Mc/sec: 3759.56
//
Query:       MMETSP1061-20121228|8313_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 597.42
//
Query:       MMETSP1061-20121228|8315_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 390.23
//
Query:       MMETSP1061-20121228|8311_1  [L=729]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 2830.00
//
Query:       MMETSP1061-20121228|8314_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 539.96
//
Query:       MMETSP1061-20121228|8316_1  [L=1010]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1010 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 3174.02
//
Query:       MMETSP1061-20121228|8321_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 361.54
//
Query:       MMETSP1061-20121228|8318_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1181.90
//
Query:       MMETSP1061-20121228|8323_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       511  (0.124573); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 1250.75
//
Query:       MMETSP1061-20121228|8326_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-38  130.0   0.0    2.5e-38  129.6   0.0    1.1  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    4.6e-20   69.9   0.0    6.2e-20   69.4   0.0    1.0  1  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit
    1.4e-19   68.1   0.0    3.4e-19   66.8   0.0    1.6  1  TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
    8.4e-15   52.4   0.0    1.2e-14   51.8   0.0    1.2  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit


Domain annotation for each model (and alignments):
>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.6   0.0   2.4e-41   2.5e-38       3     362 ..      98     473 ..      96     482 .. 0.85

  Alignments for each domain:
  == domain 1    score: 129.6 bits;  conditional E-value: 2.4e-41
   TIGR03207   3 edlqalaekarrfaaerlapgfkerdktrvldrellrdmgelgflgpelseeygglgvgclaagvlleeiarad..lsvsyvnllaslngqilaqharpeiakewlakliageallaialteprggsdaarlrlrierdgdd.......yvlngektsisa......adqadaavvfartgsveegargisallvpmdlpgit..rnrfdcigqraigrgsiffedvrvsadhllgdegkgfvqvmqgfdfsraliglqvlavaraaldetwey.vaereafgkklsafqgvsfpladletqveaarllcl...rtlwlkdhglphtseaamckwwapklaydvihqcllshghggydrg.dleqrlrdvlglqigdgtaqi 362
                 +d  al    r f ++ + p   e d+t+ l+  llr++g+lg+lg  ++eeygg g+++ a  +++ee++++d  l +sy+     l  + l+  +     +++l  +++ge+l  + ++ep++g+d   +  +++rd  +       + l g k  i+       ++  d  +v+artg        i+++lv  d+pg t  ++  d  g ra     + f++v ++ + ++gd +  ++ +m+ ++  r  +    l++ar +++   +y   ereafgk+ls+f  +   +a   + + a r       r l l   g     +a   k ++ ++a  +  + + + g  gy  + ++e+ +rd   l+ig gt + 
  MMETSP1061-20121228|8326_1  98 DDHIALRSMLRDFVKNEVEPQALEFDRTETLNLPLLRQLGDLGLLGLTVAEEYGGAGLDAAAVALVHEELSYSDpgLCLSYLAHSLLLV-NNLSINGSRAQKEKFLPAIVTGEQLGGMGMSEPNAGTDVLGMSTKAVRDESSsssssscWHLTGRKMWITNgtldggTTTGDLFLVYARTGPNR---SDITSFLVEKDMPGFTvgQKIGDKLGMRASPTAELVFDNVPIPPENIVGDVNGAILCMMRNLEIERIGLAAMALGIARRCINVMTHYaTHEREAFGKPLSDFGQIQSAIATSYAEYMAGRSYVYalaRNLDLASSG--NGLDADGTKLYCAQMAKTIADRSIQVLGGYGYVGEyHVERLWRDSKLLEIGGGTNES 473
                 688999999****************************************************************9556667765443344.44555555566789**********************************97543333444789****99986222222467899********865...479***********9832456799******************************************888888999******987777257*****************************98765112455555555..55677889********************99999987899999***********9865 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.4   0.0   6.1e-23   6.2e-20      45     370 ..     135     476 ..     129     482 .. 0.84

  Alignments for each domain:
  == domain 1    score: 69.4 bits;  conditional E-value: 6.1e-23
   TIGR03203  45 klaeqgllglpfseadggfgagavetmivmealgka..lvlepylatvvigggflrragsaaqkaaylpgiidgsktlafaqleknsrydlgdvsttakk.......kgdgwvidgekfvvlnge......aadtlivtartkgarrdrtgigvflvpadakgvtkkg.yptqdglha...aditltgvevgadaaigdpenaleliervvddarvalcaeavglmdeslkttveyi.ktrkqfgvaigsfqvlqhraadmfvaveqarsmalfatmaadfddakeranaia.aakvqigkslkfvgqqsiqlhggigmtmeakighyfkrltmiektfgdtdyhla 370
                 +l + gllgl  +e+ gg g  a    +v e l  +   +   yla  ++    l   gs aqk  +lp i+ g +   +   e n+  d+  +st a +       +++ w + g k+ + ng       + d ++v art  +r d   i  flv  d  g t       + g++a   a++ +  v +  +  +gd + a+  + r ++  r+ l+a a+g+    ++   +y  + r+ fg ++  f  +q   a  +      rs     ++a ++d a    +  a  +k+   +  k + ++siq+ gg g   e+++   ++   ++e   g  + h +
  MMETSP1061-20121228|8326_1 135 QLGDLGLLGLTVAEEYGGAGLDAAAVALVHEELSYSdpGLCLSYLAHSLLLVNNLSINGSRAQKEKFLPAIVTGEQLGGMGMSEPNAGTDVLGMSTKAVRdesssssSSSCWHLTGRKMWITNGTldggttTGDLFLVYARTGPNRSD---ITSFLVEKDMPGFTVGQkIGDKLGMRAsptAELVFDNVPIPPENIVGDVNGAILCMMRNLEIERIGLAAMALGIARRCINVMTHYAtHEREAFGKPLSDFGQIQSAIATSYAEYMAGRSY--VYALARNLDLASSGNGLDAdGTKLYCAQMAKTIADRSIQVLGGYGYVGEYHVERLWRDSKLLEIGGGTNESHHK 476
                 67889**************************998763345678****************************************************9986522222224678********998874333232567899****9887766...778*********997541556678887555899************************************************9999725799**************999999777777765..456899999988766654425899*******************************9999999998887765544 PP

>> TIGR04022  sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   3.3e-22   3.4e-19      19     322 ..     113     445 ..      97     481 .. 0.70

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 3.3e-22
   TIGR04022  19 aefaeeaaeRDrerrlPveeldafsqsGLwgitvPrayGGaevsaatlaeviaiisaaDpslgqipqnh.fallevlrlegseeqkrfffeevlaGeRfgn.alseagt.knvkelktrlerdgdg.......lrldGrkfyst......Galfahwipvlaldeegrev..lafvprdapGltviddW.sgfGqrttasGtvlldevrveaeevvpvqkafd.rptlagpvaqliqaaidvGiaraaledtlafvreka....rpwidsg.vekasdDpltiaevgelairleaaeallerageavdaaaaep....teesvaaasiavaea 322
                 +e++++a e Dr+++l +  l ++ + GL g+tv ++yGGa+++aa++a v + +s +Dp l      h + l+++l  +gs++qk++f  ++++Ge +g   +se ++  +v  ++t+ +rd+++       ++l+Grk++ t      G+   ++  v a    +r+     +v++d pG+tv +   + +G r+     +++d+v++++e++v   + +      +  +  +  aa+ +Giar  ++ ++++  ++     +p  d g +++a    ++ +  g+  +   a +  l+ +g+ +da  ++       +++a  si+v   
  MMETSP1061-20121228|8326_1 113 NEVEPQALEFDRTETLNLPLLRQLGDLGLLGLTVAEEYGGAGLDAAAVALVHEELSYSDPGLCLSYLAHsLLLVNNLSINGSRAQKEKFLPAIVTGEQLGGmGMSEPNAgTDVLGMSTKAVRDESSsssssscWHLTGRKMWITngtldgGTTTGDLFLVYARTGPNRSDitSFLVEKDMPGFTVGQKIgDKLGMRASPTAELVFDNVPIPPENIVGDVNGAIlCMMRNLEIERIGLAAMALGIARRCINVMTHYATHEReafgKPLSDFGqIQSAIATSYAEYMAGRSYVYALARNLDLASSGNGLDADGTKLycaqMAKTIADRSIQVLGG 445
                 5788999******************************************************99877777256789***********************9752566654314566666666655432122233499******98764444455567888899988877776224579*********9875389************************7666555155667799****************9988888755431122455553314555555555555555555555555555555555554333321111344455555555444 PP

>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   1.2e-17   1.2e-14       6     286 ..      98     391 ..      93     410 .. 0.76

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 1.2e-17
   TIGR03204   6 keelafrdevraffkdnvpaktrqklvegrhltkeemvewyrilnkkgwgvshwpkqyggtgwtsvqdyifneelqaapapqp...lafgvsmvgpviytfgneeqkkrflprianvddwwcqgfsepgsgsdlaslktkaekk.......gdkyiingqktwttl......aqhadlifclcrtdatakkqegisfilvdmkskgitvr.piqtidg..gsevnevffddvevplenlvgeenkgwdyakfllgnertgiar..vgvskerirrikelaak.vesggkpviedakfreklaa 286
                  + +a+r  +r+f+k++v ++    l   r +t    +   r l   g        +ygg+g  +    ++ eel           la  + +v   +   g+ +qk++flp i   ++    g+sep +g+d+  + tka +           + + g+k w t       +   dl ++ +rt +    ++ i+  lv+    g tv   i    g  +s   e++fd+v +p en+vg+ n         l  er g+a   +g+++  i+ + + a++  e+ gkp+ +  +++  +a+
  MMETSP1061-20121228|8326_1  98 DDHIALRSMLRDFVKNEVEPQA---LEFDRTET--LNLPLLRQLGDLGLLGLTVAEEYGGAGLDAAAVALVHEELSYSDPGLClsyLAHSLLLVN-NLSINGSRAQKEKFLPAIVTGEQLGGMGMSEPNAGTDVLGMSTKAVRDessssssSSCWHLTGRKMWITNgtldggTTTGDLFLVYARTGPN---RSDITSFLVEKDMPGFTVGqKIGDKLGmrASPTAELVFDNVPIPPENIVGDVNGAILCMMRNLEIERIGLAAmaLGIARRCINVMTHYATHeREAFGKPLSDFGQIQSAIAT 391
                 6777888888888887776643...33344433..345678888888887778899*******************87655555011555555555.46778***************************************98752222222457*********8752223223567999999999885...5677777889999999995145444442256789********************99999999********972258899999999999975268999*99877777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 2016.96
//
Query:       MMETSP1061-20121228|8327_1  [L=545]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (545 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       370  (0.0901999); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 2055.26
//
Query:       MMETSP1061-20121228|8331_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 2219.82
//
Query:       MMETSP1061-20121228|8328_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2568.71
//
Query:       MMETSP1061-20121228|8329_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-08   30.9   0.4     0.0026   14.9   0.0    2.8  3  TIGR02408 ectoine_ThpD: ectoine hydroxylase
  ------ inclusion threshold ------
      0.029   11.5   0.0        2.7    5.1   0.0    2.3  2  TIGR01762 chlorin-enz: chlorinating enzymes


Domain annotation for each model (and alignments):
>> TIGR02408  ectoine_ThpD: ectoine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   6.7e-06     0.014      20      64 ..     107     150 ..      98     159 .. 0.82
   2 !   14.9   0.0   1.3e-06    0.0026     131     172 ..     240     281 ..     180     318 .. 0.87
   3 ?   -0.4   0.0     0.059   1.2e+02     214     249 ..     302     337 ..     295     353 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 6.7e-06
   TIGR02408  20 kdlqsyerdGflvlenlvaddevaalraelerliadpavdrdeea 64 
                 ++   ++ +G+l++ ++++++eva  +a ++r + d  v+r + +
  MMETSP1061-20121228|8329_1 107 DERYLFDLNGYLIVRGVLTPEEVAEANAAIDRHADD-MVERSDSN 150
                 55566899************************9988.67776665 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 1.3e-06
   TIGR02408 131 fetwhaedGlpalravsvsialtenyetnGslmvvpGshktf 172
                 f ++h+  G  +   + + ++l + ++ +G++ +vpGshk+ 
  MMETSP1061-20121228|8329_1 240 FLAYHCHHGTITTALLGCNVILRDHNPGDGGFCIVPGSHKSN 281
                 7789999**99999*************************964 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.059
   TIGR02408 214 tGkaGsavffdanllhGsgsnitpyprsnvflvfns 249
                 + kaG ++ f   ++hG+   ++   r   ++ f  
  MMETSP1061-20121228|8329_1 302 ATKAGDVILFSEGTVHGAKPWMSDEQRRTALFRFSP 337
                 569**************9988887777666666655 PP

>> TIGR01762  chlorin-enz: chlorinating enzymes
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0    0.0013       2.7       3     109 ..     104     227 ..     102     300 .. 0.58
   2 ?    4.3   0.0    0.0022       4.5     212     248 ..     302     337 ..     292     342 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0013
   TIGR01762   3 ltaeekqsfeknGfiGpftlyepeelkelwkei...rldlldreaapyddl........ldvaianydrhl.....dvdllashisrkeivdrvesilGpnvlcwrteffp....kypGdeGtdwhq 109
                 +t +e+  f+ nG++    +  pee+ e    i     d+++r+ +   +          +   ++  r l     d  ++ s+++++++v   + +lG     +r +++p    +  G eG + h 
  MMETSP1061-20121228|8329_1 104 MTEDERYLFDLNGYLIVRGVLTPEEVAEANAAIdrhADDMVERSDSNLRNAregtkyygQGPGRMDLGRCLewgktDSRVFQSILAHPRLVPIFHGLLGKG---YRMDHLPmilaQNKGSEGFQLHG 227
                 78999*********************998877621134688888887776655555555445566666655333224556666666666666666666654...44444441111445556655554 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0022
   TIGR01762 212 emkaGqfiiftsrlmhaslpnsseskirlGyaaryvp 248
                   kaG+ i+f    +h+++p  s+++ r     r+ p
  MMETSP1061-20121228|8329_1 302 ATKAGDVILFSEGTVHGAKPWMSDEQRRTAL-FRFSP 337
                 579********************99988654.45655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 2193.05
//
Query:       MMETSP1061-20121228|8332_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2691.63
//
Query:       MMETSP1061-20121228|8333_1  [L=1120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-81  272.2   0.0    4.9e-71  237.4   0.0    2.2  2  TIGR00339 sopT: sulfate adenylyltransferase
    9.6e-62  205.7   0.0    1.9e-61  204.7   0.0    1.5  1  TIGR00455 apsK: adenylylsulfate kinase
  ------ inclusion threshold ------
       0.01   13.4   0.0       0.02   12.5   0.0    1.5  1  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
      0.068   10.4   0.4        2.4    5.3   0.0    2.2  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
      0.076   10.5   0.0       0.14    9.6   0.0    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
      0.094    9.1   0.1       0.15    8.5   0.1    1.1  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
       0.12    8.7   0.0       0.18    8.1   0.0    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase


Domain annotation for each model (and alignments):
>> TIGR00339  sopT: sulfate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.2e-11   7.2e-09       1      71 [.     404     474 ..     404     493 .. 0.88
   2 !  237.4   0.0   8.4e-74   4.9e-71      67     368 ..     497     815 ..     481     823 .. 0.92

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.2e-11
   TIGR00339   1 PhGgklkelvvkdpeeeekllaeaeslksielskrslrdvelllvGafsPleGfmneadyesvve.emrLsd 71 
                 P+G+k+++l v + +++++ + eaesl+++ +++++l +++ +++G+++Pl+Gfm+e  + ++++ ++ L d
  MMETSP1061-20121228|8333_1 404 PDGDKIVDLHVPA-DKKATRTLEAESLPKVLVTDIDLNWLQTIGEGWAAPLKGFMREGTLLETLHfNSVLID 474
                 9*******99988.688888999**********************************999999986665555 PP

  == domain 2    score: 237.4 bits;  conditional E-value: 8.4e-74
   TIGR00339  67 mrLsdgvlfslpilLdideedakdike..gdrvllvdkkgqplailtieevykpdkekeakkvygttdpehpavkklksagevyigGklevinlpkf.edfpefrltpaevReeikeegwdkvvAfQtRNpvHraHeeLtkraaer...d..knagvlvhplvGltkkgDipaevrlraye.vlkeky.....ldpervvltllplaMryagprEallHaiiRkNyGathfivGRdhagvgkslkg.....qdlysayeaqelvekakaelglkivpfeevlyleeedeiatadeakaekekllnisgtklRemlregekp 368
                 +r  + v++++pi+L i++ ++ +++   +  v+lv + g+++ai+++ e+y+  ke+  +++yg  dp+hp+++++ + g+++igG++e+++ +++ + +++ r+t+ e+ +e++++g+d+v AfQtRNp H +H++L+k a e    +  k++++ + pl G tk++D+p +vr++++e vl+ ++     ldpe++v+++ p++M yagp+E+ +Ha+ R+ +Ga++f+vGRd+ag++ s +       dly+ ++++ +++  +   ++k++ f +v+y+ + + ++  de++ +  +++ isg+k+R ++r+g+ p
  MMETSP1061-20121228|8333_1 497 NRPRNRVSMPIPITLSISDYTKGRVETsgKRDVALVTRMGHTVAIMRDVEIYENRKEEIVSRMYGVIDPDHPYIHNIYMGGDYLIGGEIELLDRIRYnDGLDKWRKTATELMQEFQDKGADTVYAFQTRNPTHAGHAYLMKSAGEDlrsKgyKKPVLWLSPLGGWTKSDDVPLDVRVKQHEeVLQAGVshpggLDPETTVMAIWPSPMVYAGPTEVEFHAKSRRSAGASYFVVGRDPAGMKGSPNAvahpdDDLYDGNHGRYVLQNSPGIGDMKMLSFVKVMYDTTDNVMKLPDESRMQ--DFISISGSKMRLLARNGAVP 815
                 56678899***********99996655115679****************************************************************9*********************************************999765267999**************************999887633333689********************************************987766788889********************************************999..***************98755 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.7   0.0   3.3e-64   1.9e-61       5     183 ..     202     383 ..     199     384 .. 0.95

  Alignments for each domain:
  == domain 1    score: 204.7 bits;  conditional E-value: 3.3e-64
   TIGR00455   5 itkeerkakkkqksvvlWltGlsgsGkstianalekkLee.kglrvevLDGDnvrhgLnkdLGfseedrkenirrigevakllvesgvivltafisPyradrdevrelveeg..kfievyvkvpLevceqrDpkGLykkareGeikeftGidspyeaPeapelvldtdkkeveesvekllel 183
                 + ke r a  +qk+ +lW+tG sg+Gk+tia+ale  L +  g +v++LDGDn+r+gLn+dLGfse dr e +rr ge+a l+++sgvi+l+ +isPyr+drdevr+++e+    f ev+++vp+e   +rDpkG y++ ++Ge+k+ft id+pye+P +pe++l+t + ++eesv +l++ 
  MMETSP1061-20121228|8333_1 202 LPKETRYAALGQKGATLWMTGCSGAGKTTIATALEDILVKnYGKHVYRLDGDNLRTGLNRDLGFSEWDRAESVRRTGELATLFSDSGVITLVGLISPYRKDRDEVRKRHEDQgiPFYEVFLDVPVEELFARDPKGQYARVKSGELKHFTCIDDPYEEPLNPEITLKTHELKIEESVAQLFKR 383
                 6678889999**************************99762699*****************************************************************998778**************************************************************99875 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   3.4e-05      0.02       3     111 ..     220     332 ..     218     379 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.4e-05
   TIGR01313   3 lmGvaGsGkstiakelakklg......akfieGDdlhpkaniekmsaGiPLtDdDRlpWLekladalakaaakekvksiitCsaLkrkYRDllReaeaelaf....iyLeaskevilkR 111
                 + G +G+Gk+tia++l + l       +  ++GD+l +  n++        ++ DR++ +++ ++ ++   +++ + +++   +  rk RD +R+++ +  +    ++L+ + e++ +R
  MMETSP1061-20121228|8333_1 220 MTGCSGAGKTTIATALEDILVknygkhVYRLDGDNLRTGLNRD-----LGFSEWDRAESVRRTGELATLFSDSGVI-TLVGLISPYRKDRDEVRKRHEDQGIpfyeVFLDVPVEELFAR 332
                 579************9887764555656669*****9999987.....4578899999999999999998888888.588888888889999996554444311335555555544444 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0041       2.4      11      40 ..     214     243 ..     211     260 .. 0.85
   2 ?    2.7   0.0     0.025        15     185     210 ..     528     553 ..     526     573 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0041
   TIGR02770  11 rgkvlalvGesGsGksltalailglldkel 40 
                 +g  l + G sG+Gk++ a+a+ ++l k+ 
  MMETSP1061-20121228|8333_1 214 KGATLWMTGCSGAGKTTIATALEDILVKNY 243
                 67788899*****************99875 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.025
   TIGR02770 185 DlgvvaeladevavmekGkivergtv 210
                 D++ v+++ + va+m++ +i e+++ 
  MMETSP1061-20121228|8333_1 528 DVALVTRMGHTVAIMRDVEIYENRKE 553
                 8999*****************99864 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00024      0.14      26      58 ..     213     245 ..     210     265 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00024
   TIGR02673  26 ekgeflfltGasGaGkttllklllgaekpsrGe 58 
                 +kg  l++tG sGaGktt+   l  ++  + G+
  MMETSP1061-20121228|8333_1 213 QKGATLWMTGCSGAGKTTIATALEDILVKNYGK 245
                 578999*************99888887777775 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00025      0.15     360     391 ..     214     245 ..     206     259 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00025
   TIGR02868 360 pGervavvGasGaGKstLlallaglldplkGe 391
                 +G+ + ++G sGaGK+t++ +l  +l  + G+
  MMETSP1061-20121228|8333_1 214 KGATLWMTGCSGAGKTTIATALEDILVKNYGK 245
                 799999***************99988776665 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0    0.0003      0.18     342     390 ..     213     263 ..     202     266 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0003
   TIGR01842 342 kaGealaiiGpsgsGkssLarllvGvwlpasGs..vrlDgadlkqwdretl 390
                 ++G++l + G sg+Gk+++a  l  +  ++ G+   rlDg +l+   +++l
  MMETSP1061-20121228|8333_1 213 QKGATLWMTGCSGAGKTTIATALEDILVKNYGKhvYRLDGDNLRTGLNRDL 263
                 689***********************99999974369***99987655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        63  (0.0153584); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.68u 0.14s 00:00:00.82 Elapsed: 00:00:00.52
# Mc/sec: 2842.84
//
Query:       MMETSP1061-20121228|8336_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    7.7   7.8       0.68    8.9   3.0    2.1  2  TIGR04101 CCGSCS: CCGSCS motif protein


Domain annotation for each model (and alignments):
>> TIGR04101  CCGSCS: CCGSCS motif protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.31   1.3e+03       6      22 ..      14      30 ..      11      35 .. 0.67
   2 ?    8.9   3.0   0.00017      0.68       5      44 ..     165     204 ..     162     207 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.31
   TIGR04101  6 kkiFkkkkskakqekle 22
                  +F  +++ a++ + +
  MMETSP1061-20121228|8336_1 14 SFVFSADNVDAVATEQT 30
                55788888888776554 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00017
   TIGR04101   5 fkkiFkkkkskakqekleleaieqaeqseekvaaeieekk 44 
                 f+ +Fk ++  +k ++ + e +e+  +++e+v+++ ee++
  MMETSP1061-20121228|8336_1 165 FTVVFKNEDGTEKTPEETSEMMENVSKHNEAVKQKQEEDQ 204
                 899********************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1345.03
//
Query:       MMETSP1061-20121228|8335_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-53  178.8  23.5    4.6e-53  178.4  16.3    1.1  1  TIGR00797 matE: MATE efflux family protein
    8.8e-06   22.5   2.9    1.9e-05   21.4   2.0    1.6  1  TIGR02900 spore_V_B: stage V sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.4  16.3   2.2e-56   4.6e-53       1     380 [.     192     588 ..     192     601 .. 0.93

  Alignments for each domain:
  == domain 1    score: 178.4 bits;  conditional E-value: 2.2e-56
   TIGR00797   1 PailaniaqpllslvDtafvGhlg.pveLaavglgslvlmvliiillglltattalvaqavGagnqqrlsrsasqslllalllgllvavvlifaakpllslmg..adeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilif.kfg.....lGivGaAlAtvisqylmflllllyilkakkvdlknegllkpdwealkrllklglplllrvilvsflvtllallvarlG..stalAahqvalqvesllfmlafGlaiAvsalvGqalGagdp.......krakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpl 380
                 Pa++ +++ pl++ vDt++vG+lg +++La+ + ++++ ++l++++++l   t +lv+ a+ +g++++++  + +sl+l ++lg++ ++ l+++ +++l  +   a+++v+++a  Ylr + lg++  l+  +   + rG+ +t tpl +++++n +n  Ld++li+   g      G+vGaA+At+ s++l  l ++ ++l+ +k+   + +l+ p  ++l +ll  g  +l+r++++ +++ +++  +  l    ++ Aa+++++q+ s+   +++G+  A+ alv +  Ga+d+       ++a+e+a ++l +++l+gl l+i  il  +++  lf++ pev e+++   ++++l +++++     +G+++G+g  k +a+vt++ ++ +  +l
  MMETSP1061-20121228|8335_1 192 PAVMNLMVVPLVNSVDTFWVGRLGvAMALAGQSAANQACFTLFFLIAFLPNMTAPLVSSAISSGDEKQARERVCESLFLCTVLGAIGTAALVIFPRQILTALLlpANSPVLDYAAPYLRWRALGMVPSLVAATGSAAYRGLLNTVTPLKVSLLTNGVNLLLDPLLIYgTRGfsfsgVGFVGAAVATAASETLGGLTYIRLLLR-RKLAKMSMLLKPPPMKSLVPLLTGGAAMLMRQLALNVSFLVATRRAQILDasGVSGAAYGITMQIYSVGIIALVGMQSAAAALVPSFWGAKDVsdpsqrdQNAREAADRMLGWSTLVGLGLGIGQILLLPVLVPLFSTLPEVREAVKMPSLIASLIHVVNGPVLAGEGIMMGVGAYKALAMVTMGYVVSMFGCL 588
                 9***********************************************************************************998888888877777765557**************************************************************555599*9***************************6.7777776899999***************************99988777773347779**********************************97444444468*******************************************************************************9988776665554 PP

>> TIGR02900  spore_V_B: stage V sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   2.0   9.4e-09   1.9e-05     211     401 ..     169     358 ..     156     446 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 9.4e-09
   TIGR02900 211 kkffdaksegka.llkdllsvslPltlsrllgsllslletllvpkrLvlaGvaaseAlslyGklsgmalsllllPavItsslstalvPdisealakknyklvekRieqalkislllglitvvillviadelgk.llykrdd.....lgefikvlalsvlflylsatlqsiLqgLgkqkvalrnslivaivkiil..lfvL 401
                   f++a   ++  l k +l +s+P +++ +++ l++ ++t  v +  v+  +a + A ++        ++l     +++  l  +  P +s a++ ++ k  ++R+ ++l ++++lg+i ++ l++++ ++++ ll  +++     ++ +++  al ++   + at  +  +gL    + l  sl + +v+++l  l++ 
  MMETSP1061-20121228|8335_1 169 DRFIKALPFQRDeLDKLILKTSVPAVMNLMVVPLVNSVDTFWVGRLGVAMALAGQSAANQ------ACFTL----FFLIAFLPNMTAPLVSSAISSGDEKQARERVCESLFLCTVLGAIGTAALVIFPRQILTaLLLPANSpvldyAAPYLRWRALGMVPSLVAATGSAAYRGLLNTVTPLKVSLLTNGVNLLLdpLLIY 358
                 44455554455545668999*********************9987533333333333333......22222....345555667788*****************************************998661555443323333899*****************************************9986333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 2615.78
//
Query:       MMETSP1061-20121228|8334_1  [L=895]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-05   20.7  32.1    1.5e-05   20.7  22.3    4.4  4  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    0.00014   17.6  31.4    0.00014   17.6  21.7    3.8  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -13.0  12.5         2   4.1e+03     734     921 ..     197     388 ..     109     417 .. 0.57
   2 !    7.3  16.3   8.1e-05      0.17     670     790 ..     450     570 ..     438     585 .. 0.56
   3 !   20.7  22.3   7.2e-09   1.5e-05     237     484 ..     545     791 ..     542     809 .. 0.78
   4 !    0.6   3.2    0.0087        18     837     889 ..     827     883 ..     810     895 .] 0.44

  Alignments for each domain:
  == domain 1    score: -13.0 bits;  conditional E-value: 2
   TIGR02169 734 eklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaeln...klelekelleeeiqelqeeieeleeqkkeiekeieelk.akleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlk 921
                 +++     +l+++ s++ +   +k+++ k+ ++  +++ ++  +l   + +   e +++  +e++ +++k ++  ++ +++ +  + + +   k e++ e +++ + + q+  ++ e+ + +  k  ++ k +k++  +++ +  e    ++ + l++L++e ++ ++ l++ +    +l +   ++  + k
  MMETSP1061-20121228|8334_1 197 AAEGGDTSALQRSSSKTRRSSSKKRSSSKKRSSSKARKPKSSRELAGSVGEASVEGQNSISKESTGKKKKKKKSDKEKKKQPAPSNDDFSvpsKVEMDSEWESQGSITVQDTFAQEESSRPKKSKDKDKEKsKKKKRSKSKGHFPELPPDDFGDGLEGLAEEFRRSKESLSKDKMTTSDLVSVSSDEIANSK 388
                 444455566666666666666777777777777777777777777777777666666666666666666666666666555555555544111333444444444444444443333333222222222220222223333333455556777777777777777777777777666666544444333333 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 8.1e-05
   TIGR02169 670 sasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaels 790
                 s++ +e++ rl+++l +  +++ ++ +e  + +++  ++s++l++ + ++ e+++e+ ++ ee ++  + +e+ ++++ +le+++ ++  + +el + +++ ee++++l e++++ e++l+
  MMETSP1061-20121228|8334_1 450 SNERQEEILRLQQELSAALQKQLTMSEEHIKEKNEFMQVSRELDRVRLELAEAREERGEVMEELKARDRVIEDDRNRIANLEQAIDDQLGKEEELMKTVQHSEEEIEHLLEEIQNFEKKLE 570
                 3444555555555554433333344445555555555555555555555555555555555555555555566666666666666555555555555555555555555555555555554 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 7.2e-09
   TIGR02169 237 ekqkekiekelaeleeelekleeeieelekele.eiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeid....klkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklek 484
                  k  ++ e+e+++l ee++++e+++e+ e     +   +l++++k +    e+e++ +k+k+e+l+ ++e +   + + + ++e+++++++ ++ +++    ++ +++ + ++ i + ++e ++ ++  + ++++l+  r++l e  ++a ++re l++ ++ +++l+ e+++l  + + l++++  +e+ ++el ++  ++ +k+ e  e++ + + + ++ae+kl+++++ ++k+  e+ ++++  +++++
  MMETSP1061-20121228|8334_1 545 MKTVQHSEEEIEHLLEEIQNFEKKLENGETSGGgASFVELRNAKKAVTV-KEDEIVSLKKKIEKLEKDLEDA---MTVPQLQIEELDHENQALQGRLKgerlEYTSKLSARDEIISNLRAELASYTS--SPDAQNLQSARQKLTEAREDATQVREDLAATRRYVDELQGEREDLIEKYNLLKDKSVFMEKTVKELSEKSDNLAKKVYEWTEKTYDWKRRAETAERKLKENNDGRDKVGGEVGEKEASKDAVDE 791
                 5666777888888888888888888887776551455678887777766.89**************987665...4555555555555555554444410004444444445555555555555554..34678899999***********************************9999999******************************************************99999888888777765 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.0087
   TIGR02169 837 qelqeeieeleeqkkeiekeieelkakleeleeelee....leaavreLeeelkdLk 889
                   ++ +i+ leeq++e+e++i++l+ ++ ++++  ++     +++v++Le e + L+
  MMETSP1061-20121228|8334_1 827 SPEEIRIRVLEEQNHEFEAKIAQLNSDIVKMQTSHKNelysSKKKVAQLEGENEALA 883
                 333333444444444444444444444444433222211113333444444333332 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   7.9      0.53   1.1e+03     313     518 ..      63     271 ..      44     308 .. 0.38
   2 !    8.9  19.3   2.8e-05     0.057     212     432 ..     356     571 ..     353     576 .. 0.79
   3 !   17.6  21.7   6.8e-08   0.00014     696     986 ..     585     875 ..     577     888 .. 0.55

  Alignments for each domain:
  == domain 1    score: -5.3 bits;  conditional E-value: 0.53
   TIGR02168 313 qlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqlee..rrerlkqeieele.kkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknks 518
                 +   ++ +l+e+ ++  ++k e +++l +le +++++ +++   +++   ++ +  +++sr+++l  e  ++ +e+++  + +++++++ e   +  ++l    r++ l++++++++ +  +  ++  + ++++ +e   + + ++++ ++ +   ++ + + ++ +++ +k +++ + + +  e+  + q++ +++s g k+ +k+++
  MMETSP1061-20121228|8334_1  63 RRAGNRRSLSERPTRRTRSKSEVSKRLRRLESDFTSAIKSFRGSKSAGGVFKGKSSDVNSRIDSLALERSTQDAEFNSRFQMMERTKSNPEFSPKPTKKLRGgrRKSTLDDTNNSASgDGPSRSRSSTRGTRSSAAEGGDTSALQRSSSKTRRSSSKKRSSSKKRSSSKARKPKSSRELAGSVGEASVEGQNSISKESTGKKKKKKKSD 271
                 44444555555555555555555555555555555555555555555555555555555555555555555555555555555544444443333333333200222222222222101122111111111111111111111111111111111111111111111122222222222222222222223333332222222222222 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 2.8e-05
   TIGR02168 212 Aekykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekklee 432
                 Ae++++ ke l++ +++ + l   + +e  ++ e+++k++++++e++ + ++++e +    + + ++  e+ ++  +e + l++++ + e + +  +er+e    e+ +l+++l  + +k+ + +ee  + ++e+ +++ el++++ el+ea++e+ e+ ++l++ ++ +e+ r+++a+le+ ++++  + e+l ++++++ee+ e l +ei++ ekkle+
  MMETSP1061-20121228|8334_1 356 AEEFRRSKESLSKDKMTTSDLVSVSSDEIANSKEKKYKKVNSMFESAWTGMDRSEHRSPFSNGKTQNPFEDENDRIGEDDVLRQAV-DYEVKQALSNERQE----EILRLQQELSAALQKQLTMSEEHIKEKNEFMQVSRELDRVRLELAEAREERGEVMEELKARDRVIEDDRNRIANLEQAIDDQLGKEEELMKTVQHSEEEIEHLLEEIQNFEKKLEN 571
                 89999999999999999999999999999999999999999999999999999999999999888888888777777766666655.45665566666655....55555555556666666666666666677888999999999999999999999999999999999999999999999999999999999999999999999999999888888874 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 6.8e-08
   TIGR02168 696 aelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleel.eeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleek.veeeeeeaeeelkrleekikeL 986
                 ++++k+++  e+e  +l++++ekl+k+le+   +++  + ++e+l +e ++l+ rl+ ++ e ++   ++ e  ++ ++e+ + + +   +++++ ++++++++e++++ re+l+++++ ++el+ e +++ e+++ l+++   +ek+++el+e++++l++++ + +++  + +++ e++e++l+e ++ ++++  ++ e ++++++++e  + +  ++   + + e++  + + +++ +++ e+  +e++ r+ ee++ e+e+  ++ ++ +++ +++ ++el + ++k+++L
  MMETSP1061-20121228|8334_1 585 RNAKKAVTVKEDEIVSLKKKIEKLEKDLED---AMTVPQLQIEELDHENQALQGRLKGERLEYTSKlSARDEIISNLRAELASYTsSPDAQNLQSARQKLTEAREDATQVREDLAATRRYVDELQGEREDLIEKYNLLKDKSVFMEKTVKELSEKSDNLAKKVYEWTEKTYDWKRRAETAERKLKENNDGRDKVGGEVGEKEASKDAVDEAPQGMFLQAAMEKGKPEKKGPSWKIFKNGQDNQELSPEEIRIRVLEEQNHEFEAKIAQLNSdIVKMQTSHKNELYSSKKKVAQL 875
                 445555555555555555555544444444...344455555555555555554444444433322022222222222222222224455666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666555555445555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (895 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       451  (0.109946); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.17s 00:00:00.93 Elapsed: 00:00:00.65
# Mc/sec: 1817.39
//
Query:       MMETSP1061-20121228|8337_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.8e-100  333.6   0.0   4.9e-100  332.8   0.0    1.4  1  TIGR00233 trpS: tryptophan--tRNA ligase
      2e-06   24.9   0.0      0.024   11.5   0.0    2.3  2  TIGR00234 tyrS: tyrosine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00233  trpS: tryptophan--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  332.8   0.0  2.4e-103  4.9e-100       3     328 .]      80     434 ..      78     434 .. 0.93

  Alignments for each domain:
  == domain 1    score: 332.8 bits;  conditional E-value: 2.4e-103
   TIGR00233   3 krvltGiqpsGklhlGnylgairtkveqqee...........velfiqvaDlhaitvkkltdeealrkaveelvadilAvGlDpekttiflqsevpehselavllskkvtlgelkritqfkdks..qeenvsiGllsypvlqaAdiLlyqadlVPvgeDqkqhleltRdlaerfnkkfkk.................vfklPelliskffarlmglqd..kKMSkSdpn..saIfLtdepkeikkKikkaatdsgretleeerekpgvpellviyellskeeeddkkleedlekeksgkllygelKkalievlqeflkelqekreevaee..eldkileagakkaretaektlakvkkalGl 328
                  rvl+G+qp+G+lhlGnylgair++v++q+e           ve+f++v+Dlhait+++  d++ l+ +++  +a ++A G+Dp k++if+qs+vp+hsel++ll++++ +++l+r++qfk+ks  q e+v +Gl++yp+l+aAdi+lyq+++VPvgeDq qhleltRd+ +rfn++f k                 vf  P ++i k++ar+m+l+d   KMSkSdp   s I+ +d+pk+i++Kik+++tds++ +  ++ e+p+ ++ll+i+ +++ ++      +ed+ +e+  +  +ge+K  l+e++++ lk++q++++ev+ +  +l+ il++ga  a+++a++tla++k a+G+
  MMETSP1061-20121228|8337_1  80 ERVLSGVQPTGSLHLGNYLGAIRQWVDFQNEdqynddgevvpVENFFCVVDLHAITMPH--DPKELKESTLSSAALYIAAGIDPAKSKIFVQSHVPAHSELSWLLNCITPMNWLERMIQFKEKSkkQGESVGVGLFTYPILMAADIMLYQSTKVPVGEDQRQHLELTRDVVRRFNDLFCKgnqykkrckaagvpsrpVFVEPDAIILKEGARVMSLTDgtSKMSKSDPAdgSRINVLDDPKTIRDKIKRCKTDSFEGIEWDNPERPEATNLLNIFAAVQPTKR----SKEDILAEVGDMT-WGEFKPVLAEAVVQHLKPIQDRYHEVRSDpaALEAILKEGADAANAVASQTLANTKVAMGF 434
                 68*************************954423333444444689**************..***************************************************************777777*********************************************99865566777999999999999******************************99************************************************98888....5677777776655.****************************999*****************************8 PP

>> TIGR00234  tyrS: tyrosine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   1.6e-05     0.034      27      64 ..      72     108 ..      51     110 .. 0.72
   2 !   11.5   0.0   1.2e-05     0.024     148     212 ..     191     253 ..     147     266 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.6e-05
   TIGR00234  27 ekklkkneklklylGvdPtaqslHlGhlv.plkkLrdfq 64 
                 +kk+   +  ++  Gv Pt+ slHlG+++  ++   dfq
  MMETSP1061-20121228|8337_1  72 KKKKP-VRAERVLSGVQPTG-SLHLGNYLgAIRQWVDFQ 108
                 33333.46778999******.******984456666665 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 1.2e-05
   TIGR00234 148 vnrmlardafssRleenglslsefiYpllQayDfvaLdkddlqlGGsDQwgNilagidLirrnlp 212
                 ++rm++ ++ s+++ e  + +  f+Yp+l a D++  ++ ++ + G DQ+  +   +d  rr++ 
  MMETSP1061-20121228|8337_1 191 LERMIQFKEKSKKQGES-VGVGLFTYPILMAADIMLYQSTKVPV-GEDQRQHLELTRDVVRRFND 253
                 78999999999999997.99999**********98766669999.59**8888888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 2146.04
//
Query:       MMETSP1061-20121228|8339_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 629.95
//
Query:       MMETSP1061-20121228|8338_1  [L=1191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-74  246.8   0.0    1.1e-52  176.9   0.0    2.3  2  TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
  ------ inclusion threshold ------
      0.014   12.6   0.0       0.03   11.5   0.0    1.5  1  TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase


Domain annotation for each model (and alignments):
>> TIGR00113  queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.9   0.0   5.5e-56   1.1e-52       3     266 ..     746    1031 ..     744    1052 .. 0.86
   2 !   67.5   0.0     1e-22   2.1e-19     273     343 ..    1115    1186 ..    1098    1188 .. 0.88

  Alignments for each domain:
  == domain 1    score: 176.9 bits;  conditional E-value: 5.5e-56
   TIGR00113    3 kveefdfeLpeeliaqyPveeressrLlvldketqkithktfedvldflkegdllvlnntkvikaRlfgekes...gkkvevlllr.......eldenkflalvkkskklkvGaklkfgeddge............ivaellakngrllelel..ndek..alldvleklgemPlPpYikradekadkerYqtvyskklGavaaptagLhFseelleklkakgveiefvtLhvGagtFrpveveeiedhvmhaeylevpketvevlektkesGkrilavGttsvrslesl 266 
                  ++++f ++L ++ ia+yP+ +r ssrLl +d + +  +  +f+d +  l  +  lvln++kv++aRl  +  +   g+ +e+++l+        ++  ++  +++k  +++vG+ +++  + g             i +e+++ ng++  ++   +de   ++ d++ +lg +P+PpY +r+ +  d+  Y tvy+   G+vaaptagLhF++++l ++  +++   ++ LhvGagtF+pv++e+ +dh mh e + v+    + + ++ es +r++ vGtts r+lesl
  MMETSP1061-20121228|8338_1  746 SMSDFTYDLRDDTIAKYPADPRGSSRLLNVDADGNVHYFDNFSDSILPLLGDSHLVLNESKVVNARLSVNPTNepdGTPLEMMVLDldgvlqqSCQGAELNVMLRK-GAVRVGDSFQIHGE-GSvsfsvakvigpwIEDEKSQGNGTECIVKCsvEDESiaNMSDLFRSLGSVPIPPYFDREADLSDESGYNTVYAAGEGSVAAPTAGLHFTDPILARIGLHNI--SYLSLHVGAGTFKPVSAEDARDHEMHGESFVVSVGELQRIIESLESKRRLVVVGTTSSRTLESL 1031
                  689******************************999999*****999999999**************987666667999999876422211115677777777777.57899999988755.335689999*9**9999999999988766651144424599********************************************************88876..679******************************9999999999999****************97 PP

  == domain 2    score: 67.5 bits;  conditional E-value: 1e-22
   TIGR00113  273 llepeasetdifiypgkkfkvvdalitnfhlPkssllmlvsaligr.eklleiyktaveekyrffsyGdaml 343 
                    ++ +++t+++i pg++fkvv+ litnfh P+s+l++lvsa+ g  +k+ ++y++a +++y+f syGd+ +
  MMETSP1061-20121228|8338_1 1115 AEQTVTGRTSLMIAPGYDFKVVENLITNFHAPDSTLMLLVSAFLGDgKKVRKVYEAAQDRGYKFLSYGDSCF 1186
                  34678899************************************97478999*****************976 PP

>> TIGR01182  eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.5e-05      0.03      59     124 ..     971    1038 ..     959    1042 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.5e-05
   TIGR01182   59 evligaGTv..lsaeqleeaeeaGAqFvvsPgleeelvklakekgipliPGvatpseilkalelGlsa 124 
                   + +gaGT   +sae++++ e  G +Fvvs g  +++++++++k   ++ G +++  ++  +  G+++
  MMETSP1061-20121228|8338_1  971 SLHVGAGTFkpVSAEDARDHEMHGESFVVSVGELQRIIESLESKRRLVVVGTTSSRTLESLYWCGVKR 1038
                  5789****866899******************************************999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.46
# Mc/sec: 3417.37
//
Query:       MMETSP1061-20121228|8341_1  [L=713]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-24   82.3   0.0    2.9e-14   49.7   0.0    2.1  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    6.2e-10   36.7   0.1    0.00026   18.3   0.0    2.4  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   7.9e-12   1.6e-08       2     193 ..      57     239 ..      56     291 .. 0.77
   2 !   49.7   0.0   1.4e-17   2.9e-14      27     193 ..     423     582 ..     398     594 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 7.9e-12
   TIGR03903   2 tghkvaikllRedaaeeerlvaRFrReialCarLs.hPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLp...aaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk.rvvqGas 193
                 t+ + a+k++  +   +e+ ++   Re+++ ++L+  Pni+ ++D  +  + +l+ v  y  G  l  +L      +   a e + ++ + LD +       + hRDLkP+n+++  ++ e+     DFG +     v++  e   t      G+Pa+ aPe + g     + D+++ G+i++  L G  +  +Ga 
  MMETSP1061-20121228|8341_1  57 TDIQYAVKIIDRKR-VKEHDIQSVYREVEIMKELRgVPNIITIIDFLDESQ-YLYVVQSYARGGDLFSRLTMRRQYTencAREIALVLFKTLDDMHSK--YRIAHRDLKPENLLLEDSNSEK-LYFGDFGFARH---VGE--EGLKT----RCGTPAFVAPEIVVGRRYNEAVDMWSIGVILFMLLGGYsPFTEGAE 239
                 66778899987764.5789999999*********945********987666.9***************999887765111445555555566665443..359************9887765.46778887654...333..22223....36*****************************999998514456665 PP

  == domain 2    score: 49.7 bits;  conditional E-value: 1.4e-17
   TIGR03903  27 ReialCarLs.h.PnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGas 193
                  e+++ + Ls h   +v+ lD  e e+ + + v ey++G  + + L  +   + ++  +L    L a+   hd G+ hRDLkPqn+++   ++  h kv +F  ++      +   + lt      GsP++ aPe L++ p   + Dl++ G+i+   L G +    ++
  MMETSP1061-20121228|8341_1 423 NEVSIMQSLSaHeKYVVQALDFFEEEE-FFYLVREYMDGGNVFHQLYKKTKYTEEDAKELTRSLLRAVKYMHDGGIAHRDLKPQNLLLRLDGNACHVKVAEFSFASRIY---A--PNCLT---SRCGSPSFVAPEILKNIPHDHRVDLWSVGVIIYLLLVGYPPFAKET 582
                 5677777764231468999**999877.**************************************************************************9875443...2..33454...457****************************998888876665555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   7.2e-07    0.0015      78     138 ..     114     185 ..      60     195 .. 0.65
   2 !   18.3   0.0   1.3e-07   0.00026      72     124 ..     451     510 ..     417     525 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7.2e-07
   TIGR03724  78 yiegkklkdlleekel...ellkevG....elvgklHka.givhgDlttsNiivk...ddklyliDfGLgkk 138
                 y +g +l   l+ +++   ++++e++    +++  +H++ +i+h Dl ++N++++   ++kly+ DfG +++
  MMETSP1061-20121228|8341_1 114 YARGGDLFSRLTMRRQyteNCAREIAlvlfKTLDDMHSKyRIAHRDLKPENLLLEdsnSEKLYFGDFGFARH 185
                 555555554444433335556666661111455679*7548*************6444899*******9986 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 1.3e-07
   TIGR03724  72 kkivmeyiegkkl.kdlleekel......ellkevGelvgklHkagivhgDlttsNiivk 124
                 + +v ey++g ++ ++l +++++      el++++ ++v  +H+ gi+h Dl ++N++++
  MMETSP1061-20121228|8341_1 451 FYLVREYMDGGNVfHQLYKKTKYteedakELTRSLLRAVKYMHDGGIAHRDLKPQNLLLR 510
                 46777888766551444444443677777999*************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (713 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.27
# Mc/sec: 3485.49
//
Query:       MMETSP1061-20121228|8342_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        8.3    2.4  28.6       0.44    6.6  16.1    1.5  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6  16.1   0.00011      0.44     160     398 ..      89     379 ..      58     448 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00011
   TIGR00934 160 ledrtetkvrtrtqvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvk..sdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdees..............ses...........................rriqekikrrlstssiekns..................qqnltrlaktksfdd.skavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakks 398
                 l  +t tk+ ++   sl +++ + ++f+e ++ G+ +++++ d+   d+++ + +   +  ++e+ +  + d+ +e++++t++  +k ++++++ + d  d+++ +++  ++++a++  r+k ++  +l+ +++ +s              s                               i++ +kr ++  ++  +                   ++ +  ++kt+      k   + ++k i+ + ++  ++ ++ + +++  ++  ++akrk+++f++      + + +++a k+
  MMETSP1061-20121228|8342_1  89 L-RQTITKNLGGLLASLGKNDGDDEEFEEDVLDGSSDEENQGDDDAVDDEKLEENeaDNDDKEEEEEEEEEDQDDEEEENTESFIDKIKNQSNNTNDDDGDSDSDSENSGDENDAES--RKKKEKYSRLENNNNMNSkalsvvaaeltsihS-KmpwaetfvivpptplpfgdngdpesnpLDIHDDLKREVAFYNTALEAvnlarpkceeagipftrpEDFFAEMVKTDDHMAsVKDRLIFENKKIEAVAQRKSNKEQKLRAKESQSNRLAEKAKRKREHFQE------VEKWANSAAKN 379
                 2.345678889988999******************9988776555555444333311333333344445666666777777777777777777777777777776666665555444..444333334333333333122233333333330.04444444444444444444444444446666666666655555444477888888888888877755555555554444322222222222222222222222222222223333333333333333332......22222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       350  (0.0853242); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.47u 0.17s 00:00:00.64 Elapsed: 00:00:00.34
# Mc/sec: 1816.79
//
Query:       MMETSP1061-20121228|8343_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 2264.12
//
Query:       MMETSP1061-20121228|8344_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-10   37.0   0.3    5.7e-10   37.0   0.2    2.3  2  TIGR00598 rad14: DNA repair protein
  ------ inclusion threshold ------
      0.059    9.9   1.6      0.081    9.4   1.1    1.2  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00598  rad14: DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   2.2     0.044        90      93     114 ..     145     167 ..     122     191 .. 0.63
   2 !   37.0   0.2   2.8e-13   5.7e-10      33     108 ..     240     311 ..     231     318 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.044
   TIGR00598  93 eeeLeeekerreek.keerkekk 114
                 e +L+ +kerre++ ke+ k +k
  MMETSP1061-20121228|8344_1 145 ERALQIQKERREKQeKEQEKTRK 167
                 44677777777654133444444 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 2.8e-13
   TIGR00598  33 kLltkteakeeylLkdcdldkreellrylvkknPhnsrwgdmkLylklqvekralevwGseeeLeeekerreekke 108
                 + +tktea + y L +  +        + +++nP n+ +  mkLy + +++ ra +++G+ e+L +e +rr+++k 
  MMETSP1061-20121228|8344_1 240 EWVTKTEAMNMYCLPEGSMAV----CSFEERENPRNPLFKPMKLYRRSEIRYRAHKRHGGLEGLVKERNRRRKRKL 311
                 569************999887....8999***************************************99998874 PP

>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.1     4e-05     0.081     317     444 ..     121     253 ..     113     264 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 4e-05
   TIGR00860 317 vflalleyalVnyvvhkksakkkrklllerlarllkkkeegeekrrpal..eakelsslelrakkggedleskteeeallksvppsea..sldlakileevr.iakrlrkkdeseevakeklkrakviDklsr 444
                 vf     +++V+     ++ +k+r++ l+ ++++++k+e+++ek r+++   ++e++ l+ + +++ +d +  +++++ ++++ p+++  s+ ++   ++     ++ +  +e ee a+e++++ + +  +++
  MMETSP1061-20121228|8344_1 121 VFKIYNIFIMVLTEEQIERIRKNRERALQIQKERREKQEKEQEKTRKNTnnGNDENNPLKKQKTTKSNDSALLSSSSSSIPTTTPRSNpvSKTSSASEDNNDnEYHSSEPLEEFEEGASEWVTKTEAMNMYCL 253
                 5555556777777777777777777766666666666665555554444005556888888877777666665666666666666655222222222222223455666666777777777777777766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       418  (0.101902); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1184.24
//
Query:       MMETSP1061-20121228|8345_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.11s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 3113.59
//
Query:       MMETSP1061-20121228|8349_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0072   14.1   0.0      0.013   13.3   0.0    1.5  1  TIGR00568 alkb: alkylated DNA repair protein AlkB


Domain annotation for each model (and alignments):
>> TIGR00568  alkb: alkylated DNA repair protein AlkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   3.1e-06     0.013     114     168 ..     132     183 ..      70     189 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.1e-06
   TIGR00568 114 lHiDrsEeDlrlPllslslGldaifllGglkRsekpkalrlesGDvviltGesRl 168
                  HiD+ +      ++ +slG +aif++ +     + +++ ++sGDv+++   s  
  MMETSP1061-20121228|8349_1 132 PHIDHCNDGS--SVVLFSLGRTAIFHIQTPGMA-QRHTFDMNSGDVLVFDPSSEA 183
                 4777665444..467799*********987655.557899*******99877764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 1152.37
//
Query:       MMETSP1061-20121228|8348_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-41  139.4   0.0      8e-33  111.8   0.0    2.1  2  TIGR02765 crypto_DASH: cryptochrome, DASH family
    1.1e-36  124.5   0.0    4.6e-36  122.4   0.0    1.9  1  TIGR02766 crypt_chrom_pln: cryptochrome, plant family
      3e-27   93.5   0.0    6.7e-27   92.3   0.0    1.7  1  TIGR03556 photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type


Domain annotation for each model (and alignments):
>> TIGR02765  crypto_DASH: cryptochrome, DASH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   7.7e-10     1e-06       4     104 ..      18     127 ..      15     159 .. 0.79
   2 !  111.8   0.0   5.9e-36     8e-33     245     431 .]     290     481 ..     254     481 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 7.7e-10
   TIGR02765   4 lllfrn.dLRleDnellakasskee...elvpvyvfdarq.iklsavaglaklGkarakFlaesvadLktsL.kklGsdLlvragkpedvlkelvkelk...vravflte 104
                 l++fr   LR++Dn++l++a ++ +    +vpvy+++a   ++  +  + ++ G+a   Fla+++  L+++L  kl   +l+ + +pe   +el+++ k   +++v++ e
  MMETSP1061-20121228|8348_1  18 LVWFRDhSLRVRDNDALYHAVNSMKnktSVVPVYIWNASDeTDDGSPVDATTGGTASDVFLANALNGLNQTLfGKLSVGILIGEIQPEMYAEELARTCKnigASEVYYME 127
                 89999637************988776779*******987515667889999999**************998846788899999999998888888877765566676554 PP

  == domain 2    score: 111.8 bits;  conditional E-value: 5.9e-36
   TIGR02765 245 stklspwLalGcvsarqihealkrYekergendstywvifeLlWRdyfrflalkygdklFrleGlrgkkaktkedek............ilekwkegttgyplvdanmreLaatGymsnRgRqnvasflvkelgldWryGaewfetlLvDyDvssnwgnWqylaGvgndpRgaRqFnlekqakdYDpdgeyvktWvkel 431
                 +++lsp+La G +s+rq+++al+   +   + d + +v+  + WRdy + +   + d + r   +r+    +++de+            ++e wk+g+tg+plvda mr+L++ G+m  + R   + +lv+ lg+ W  G ++f + LvDyDv+ n   W+ +  vg dp         k    +D+dg yv++W++el
  MMETSP1061-20121228|8348_1 290 ASRLSPYLARGLLSPRQVYHALVPSSSGYAKKDRASFVR-RICWRDYTYAVISLFPDVM-RGRPIREG---YHFDEEeraiddgengniLFELWKKGKTGFPLVDAGMRQLTKEGWMPQKVRLAASTCLVEGLGISWEEGMHHFAEYLVDYDVAINSNMWMNAGCVGFDPYYVG--TDYKRRPYWDKDGVYVRQWCPEL 481
                 689*************************99999999987.79*****998887776643.33333222...2222222346677788889*******************************************************************************98866..67899999************985 PP

>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.4   0.0   3.4e-39   4.6e-36       3     473 ..      18     539 ..      16     545 .. 0.71

  Alignments for each domain:
  == domain 1    score: 122.4 bits;  conditional E-value: 3.4e-39
   TIGR02766   3 vvwfr.rdlrvednpalaaaar....egevlpvfvwapeee...gq....fypgrvsrwwlkqslahldqslk...slgaklvlkrsedtvaalldvvkstgatklvfnhlydpv..slvrdhkvkekla....akgisvqsfnadllyepw.evvdek..gkaftsfaaywekclelpidaspllppkklvp.vta......sedvsacsv.ddlvleddsekssnallarawspgwsnadklleefiekqlleyskn......rkkvdsastsllspylhfgevsvrkvfqlvrlkqivwanegnseaeesvelflrsiglreysrylsfnfp.fsheksllahlkff..pwkvdeek.....fkawrqgrtgyplvdagmrelwatgwlhdrirvvvssfavkvlllpwkwgmkyfwdtlldadlesdilgwqyisgslpdgreldrldnpelegakydpegeyvrrwlpelarlp................tewihhpwdapesvlkaagvelgsnypkpivdldaare 473
                 +vwfr   lrv dn al  a++    + +v+pv++w   +e   g        g +s  +l ++l+ l+q+l    s+g  +  ++ e   + l +  k++ga+++++   ydp   + +r+  ++++l       g ++  +  +    pw e+++++    ++  f  y  k l+ +  + p + p  l   + +      ++ +s     d +++  ++     + +a aw    ++a ++le f+e       ++       +   +  +s lspyl  g +s r+v++            g   a++    f+r i  r+y+  +   fp +   +++    +f     ++d+ +     f  w++g+tg+plvdagmr+l   gw+ +++r+  s+ +v  l + w+ gm++f + l+d d+  +   w   +g++     +   d    +   +d +g+yvr+w pel  lp                 + ++ pw +p+ vl +agv lg  yp    d  + r+
  MMETSP1061-20121228|8348_1  18 LVWFRdHSLRVRDNDALYHAVNsmknKTSVVPVYIWNASDEtddGSpvdaTTGGTASDVFLANALNGLNQTLFgklSVGILIGEIQPEMYAEELARTCKNIGASEVYYMESYDPEfeTSLRELLIQHNLIpcsfRGGYTLIDYSREEELPPWkEIISDHpfRSPLIPFVDYLLKRLKQTPPSLPKPEPAGLQEsIRSpisrvvTQPISIAKLlDRVGY-TQTRTDWGSSIANAWPATETDATNALELFLESLPSSSGRDpdgecePEAKRTHLASRLSPYLARGLLSPRQVYHALVPSS-----SGY--AKKDRASFVRRICWRDYTYAVISLFPdVMRGRPIREGYHFDeeERAIDDGEngnilFELWKKGKTGFPLVDAGMRQLTKEGWMPQKVRLAASTCLVEGLGISWEEGMHHFAEYLVDYDVAINSNMWMN-AGCVGFDPYYVGTD--YKRRPYWDKDGVYVRQWCPELKDLPdtcevaeaqrgigtfkVDCLYEPWSSPQNVLYTAGVVLGETYPNRCCDERNERK 539
                 79**9447********9888752221469*******9877622233222246799***************99522245555666788888899*********************533345666666655422215688899999999999**678877622467889999999999998888888888887631222210011222222222122333.234444566799******************975444333311111022233445688****************9764433.....333..33344569**********988888883566788776665542134566432233349*****************************************************************999986.55554443343344..4455679**************99995444433333333222367899*********************98877666555 PP

>> TIGR03556  photolyase_8HDF: deoxyribodipyrimidine photo-lyase, 8-HDF type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.3   0.0   4.9e-30   6.7e-27     237     431 ..     289     485 ..      15     496 .. 0.80

  Alignments for each domain:
  == domain 1    score: 92.3 bits;  conditional E-value: 4.9e-30
   TIGR03556 237 gtsqlsaalkfgvigirtvwqatlealeasrseearesirtwqqelawrefyqhalysfpelad.gpyrekfk....ef...pwenneahfqawcegktgypivdaamrqlnetgwmhnrcrmivasfltkdliinwqwgekyfmqklidgdlaannggwqwsassgmdpkplrifnpasqaqkfdpeaeyirrwlpelrsld 431
                  +s+ls+ l  g +++r+v++a    l  s s  a+++  ++ + + wr++   ++  fp++   +p re ++    e      en + +f+ w +gktg+p+vda mrql++ gwm ++ r+  ++ l+  l i w+ g ++f + l+d d+a n   w  +   g+dp    +     +   +d ++ y+r+w pel+ l 
  MMETSP1061-20121228|8348_1 289 LASRLSPYLARGLLSPRQVYHA----LVPSSSGYAKKDRASFVRRICWRDYTYAVISLFPDVMRgRPIREGYHfdeeERaidDGENGNILFELWKKGKTGFPLVDAGMRQLTKEGWMPQKVRLAASTCLVEGLGISWEEGMHHFAEYLVDYDVAINSNMWMNAGCVGFDPYY--VGTDYKRRPYWDKDGVYVRQWCPELKDLP 485
                 4699***************975....667889999999999*********99999*****987626999987521111111123555679*******************************************************************************865..5667788889***************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.28
# Mc/sec: 2689.85
//
Query:       MMETSP1061-20121228|8350_1  [L=1091]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-18   64.3   0.0    3.2e-09   33.0   0.0    2.0  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   7.7e-13   3.2e-09       5     113 ..      84     194 ..      81     204 .. 0.89
   2 !   29.2   0.0   1.1e-11   4.7e-08     141     234 ..     244     337 ..     220     365 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 7.7e-13
   TIGR03903   5 kvaikll.RedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLa..adGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvs 113
                  vaik + R+ +   ++  +    ei++    +hPniv + D  +++    +   ey  G  +++++   ++G L+   t rLm     +l    ++ ++hRD+kPqn++++
  MMETSP1061-20121228|8350_1  84 LVAIKAIaRTSEKLTKKVLQNLEIEISILRTYRHPNIVCMHDVQKTDR-HFYLLLEYCGGGDVQHLIRsrQKGRLSERLTRRLMRDLSSGLRFLWSQELIHRDIKPQNLLLT 194
                 589996636666677788899999*******************99988.88999***********9962268*************************************987 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 1.1e-11
   TIGR03903 141 atltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaia.ghpLgevLRkalnkdvrqRa 234
                 +t+  ++ + GsP Y aPe L      ak+Dl++ G +++e + G++  +G+   ++l +++  + v lP+ +  ++p  ++LR  ln+++  Ra
  MMETSP1061-20121228|8350_1 244 QTASMAETLCGSPLYMAPEILQHHRYDAKADLWSVGTVLFEMIAGRPPYNGENHIDLL-RNIKNKAVRLPPDVRvSKPCVNLLRILLNRNPLSRA 337
                 4555666678********************************************9976.899********9886489**************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1091 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 3692.31
//
Query:       MMETSP1061-20121228|8347_1  [L=833]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 2971.54
//
Query:       MMETSP1061-20121228|8354_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 1325.39
//
Query:       MMETSP1061-20121228|8351_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-12   42.3   1.1    7.5e-12   42.3   0.7    2.4  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.5e-09   35.3   0.0    1.5e-09   35.3   0.0    2.4  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
    9.9e-09   32.7   7.3    1.7e-08   31.9   5.1    1.4  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      2e-07   28.8   0.0    3.6e-07   27.9   0.0    1.4  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    4.5e-07   27.6   0.0    6.9e-07   27.0   0.0    1.3  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    1.9e-06   24.8   0.1    2.7e-06   24.3   0.0    1.3  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0013   15.3   0.0     0.0013   15.3   0.0    2.0  3  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   0.7   1.3e-14   7.5e-12     283     371 ..      58     148 ..      31     197 .. 0.82
   2 ?   -2.2   0.1       0.4   2.3e+02      83     103 ..     176     196 ..     158     230 .. 0.40
   3 ?   -6.7  13.5         7   4.1e+03      47     112 ..     250     316 ..     231     319 .] 0.64

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 1.3e-14
   TIGR01642 283 veklvnsktvld.sed.klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvk 371
                 ++k  ns    d ++d  lyig LP d+++  ++  + +FG +    + + ++tG  KG+aF+ + d   +++ +++L G  l +++L  +
  MMETSP1061-20121228|8351_1  58 DGKDNNSSKDNDeEKDlVLYIGHLPRDFEELDLRRFVSQFGKVYNCRVARKIETGMPKGFAFIRFGDNETAKIVCETLHGYFLDKQRLVCQ 148
                 2333444444440444348*************************************************************99998888765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.4
   TIGR01642  83 rsssseskerrrsrkrsssne 103
                 ++++s+  + ++ ++ +s+  
  MMETSP1061-20121228|8351_1 176 QKRNSNLANSEKCKEITSRLV 196
                 222222222222222222111 PP

  == domain 3    score: -6.7 bits;  conditional E-value: 7
   TIGR01642  47 rkdsRdRdrrrydsrsissleedsrrrSRdrirr.rsrsssseskerrrsrkrsssnekkkddkkrs 112
                  k +R ++ +   + + ss +++++++ Rd i++  s ss+ e +e  ++++ s ++ kk ++kkr 
  MMETSP1061-20121228|8351_1 250 PKKKRRKESMDSTHSESSSTKDKKKKKKRDSIDSiASTSSKPEDTETDGKLTGSAKKAKKAKSKKRR 316
                 3333333333333334477888889999999887357777888888898888888888876665554 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   2.5e-12   1.5e-09     213     283 ..      67     137 ..      32     145 .. 0.84
   2 ?   -8.5  12.0         7   4.1e+03      32     119 ..     198     280 ..     165     299 .. 0.51
   3 ?   -8.5  12.8         7   4.1e+03      18      84 ..     252     316 ..     226     319 .] 0.40

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 2.5e-12
   TIGR01622 213 ipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNG 283
                   +   dl LY+G l  +  E +Lr     FG++ + ++ +  etG  kG+ Fi+F d e+ak   e+l G
  MMETSP1061-20121228|8351_1  67 DNDEEKDLVLYIGHLPRDFEELDLRRFVSQFGKVYNCRVARKIETGMPKGFAFIRFGDNETAKIVCETLHG 137
                 333456889******************************************************99999998 PP

  == domain 2    score: -8.5 bits;  conditional E-value: 7
   TIGR01622  32 drsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrekeerlkeelteeeRDa 119
                 +  ++Rer +    d df + +  +d   +   +++ +++++  +e++++   ++++rrk+  +  ++e       +k++ ++++RD+
  MMETSP1061-20121228|8351_1 198 REIKKRERLKALGIDFDFPGYKACQDDLEENAPEEKPDSPEDAMKEEKES-GSPKKKRRKESMDSTHSE----SSSTKDKKKKKKRDS 280
                 33455666666666666666555555555555555555555555554443.222222212222222221....223566666666664 PP

  == domain 3    score: -8.5 bits;  conditional E-value: 7
   TIGR01622  18 drdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrr 84 
                 ++ r+++ ++    + s+ ++++++k+rd   d   +  +k+ d e + +  ++ ++ ++ + ++rr
  MMETSP1061-20121228|8351_1 252 KKRRKESMDSTH-SESSSTKDKKKKKKRDS-IDSIASTSSKPEDTETDGKLTGSAKKAKKAKSKKRR 316
                 111111111111.12222222223333333.333344444444444444444444444443333333 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   5.1     3e-11   1.7e-08     273     496 ..      61     288 ..      23     319 .] 0.55

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 3e-11
   TIGR01628 273 eelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqRkarLqqqfmqasaesrqlsigspvigaanisgrhqaaqqqavvtqavkqqlasqplnfk.....inqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnrnrnv..lgnmnkkqqnaaskanqanvkaqpqaq 496
                 ++++ +  ++++   lY+  l   +++ +Lr+  ++fG++  ++v ++ e+++ kgF F+ f ++e A+   ++lhg  l+++ L   l   +     +  +  ++ + +  ql++++ ++  an    ++ +++   ++ ++++ l+   + f+       q  l ++ p+  e+p +     +++ + +g  + ++r++++   ++++  ++++ +k+++ ++    ++ 
  MMETSP1061-20121228|8351_1  61 DNNSSKDNDEEKDLVLYIGHLPRDFEELDLRRFVSQFGKVYNCRVARKiETGMPKGFAFIRFGDNETAKIVCETLHGYFLDKQRLVCQLRPSHPGMFFNTDEIINK-RKKKIQLETQKRNSNLANSEKCKEITSRLVQREIKKRERLKALGIDFDfpgykACQDDLEENAPE--EKPDSPEDAMKEE-KESGSPKKKRRKESMdsTHSESSSTKDKKKKKKRDSIDSIASTS 288
                 3444444556777889*******************************999**********************************9999987777776666666665.44444666666666666533333333333333333344444443444322322222222222222..2233333332222.22223333334444422222222222222222222222222211 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   6.2e-10   3.6e-07      84     153 ..      68     137 ..      35     154 .. 0.83

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 6.2e-10
   TIGR01661  84 sdsikganlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnG 153
                 +d+ k+  ly+  lP+     +l  + s+fGk+   r+  +  t++ kG  firf   e a+    +l G
  MMETSP1061-20121228|8351_1  68 NDEEKDLVLYIGHLPRDFEELDLRRFVSQFGKVYNCRVARKIETGMPKGFAFIRFGDNETAKIVCETLHG 137
                 6677888888888888888888888888888888888888888888888888888888888888888777 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.2e-09   6.9e-07      97     179 ..      59     145 ..      25     157 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.2e-09
   TIGR01659  97 gsddndtras....gtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrl 179
                 g+d+n+++ +    +  l + +lp+d+++ +l  +    g +  cr+ r   tg   g+af+ f+ +  ++   ++l g  +  +rl
  MMETSP1061-20121228|8351_1  59 GKDNNSSKDNdeekDLVLYIGHLPRDFEELDLRRFVSQFGKVYNCRVARKIETGMPKGFAFIRFGDNETAKIVCETLHGYFLDKQRL 145
                 444433332200003345567788888888888888888888888888888888888888888888888888888888887777776 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.6e-09   2.7e-06      60     129 ..      75     145 ..      41     178 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 4.6e-09
   TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpGrl 129
                  +++G +Prd  e +l   + + Gk+y+ r+      G  +G+af+ f + e ak     l+ y + + rl
  MMETSP1061-20121228|8351_1  75 VLYIGHLPRDFEELDLRRFVSQFGKVYNCRVARKiETGMPKGFAFIRFGDNETAKIVCETLHGYFLDKQRL 145
                 579*******************************4469******************999999998777666 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.3e-06    0.0013     208     254 ..      81     127 ..      66     145 .. 0.86
   2 ?   -3.6   0.3       1.3   7.4e+02     439     463 ..     180     204 ..     165     208 .. 0.73
   3 ?   -5.9   2.1       6.2   3.6e+03     451     472 ..     262     283 ..     239     313 .. 0.56

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.3e-06
   TIGR01645 208 vhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqs 254
                 + +d+ e dl+     fG++ +c++ar+  ++  kGf f+ f + ++
  MMETSP1061-20121228|8351_1  81 LPRDFEELDLRRFVSQFGKVYNCRVARKIETGMPKGFAFIRFGDNET 127
                 5579999**********************************976554 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.3
   TIGR01645 439 lalaaaakakeaaaalllenkkkkk 463
                   la++ k ke+++ l+  ++kk++
  MMETSP1061-20121228|8351_1 180 SNLANSEKCKEITSRLVQREIKKRE 204
                 4678888888888888888877764 PP

  == domain 3    score: -5.9 bits;  conditional E-value: 6.2
   TIGR01645 451 aaalllenkkkkkekeeeelqp 472
                 + +  + +k kkk+k+ + +  
  MMETSP1061-20121228|8351_1 262 THSESSSTKDKKKKKKRDSIDS 283
                 3344444444445555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       299  (0.0728913); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 1137.96
//
Query:       MMETSP1061-20121228|8353_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   14.7   0.0     0.0069   13.3   0.0    1.7  1  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.7e-06    0.0069      12     110 ..     285     386 ..     274     488 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-06
   TIGR03866  12 kiyvsnekdntisvidletlevvktlkvGerPrGitlskdgkllyvcasdsdavqvldaeteevlkelpsGedPe...lfvlepdgkllyianeddalvtvv 110
                 + +vs   d  + + d+e+ +v +t+   + P  +++ + +   +v+ + ++++   d +t e+++e      P     fv e +g++  ++  dd+ v v 
  MMETSP1061-20121228|8353_1 285 SKFVSASFDRFLRLWDTESGAVLNTFGNSKVPYCVEFYPRDDNYFVVGTSDNKIVTYDCTTAEITQEYNHHLAPVnaiAFVEEDNGNVKMVSTSDDKKVLVW 386
                 568888888999999999999999999999999999987777777777777888899999999999988777664222688999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 1858.55
//
Query:       MMETSP1061-20121228|8355_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1111.91
//
Query:       MMETSP1061-20121228|8356_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2321.19
//
Query:       MMETSP1061-20121228|8357_1  [L=1303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.38
# Mc/sec: 4525.84
//
Query:       MMETSP1061-20121228|8359_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.25
# Mc/sec: 2687.30
//
Query:       MMETSP1061-20121228|8362_1  [L=1392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.16s 00:00:00.73 Elapsed: 00:00:00.44
# Mc/sec: 4175.66
//
Query:       MMETSP1061-20121228|8360_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.23
# Mc/sec: 2588.13
//
Query:       MMETSP1061-20121228|8363_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1289.89
//
Query:       MMETSP1061-20121228|8364_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|8365_1  [L=769]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (769 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 3171.86
//
Query:       MMETSP1061-20121228|8367_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-08   30.2   3.7    1.4e-05   22.6   0.0    3.8  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    5.9e-07   25.5   2.2    5.9e-07   25.5   1.5    1.7  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    5.7e-06   23.0   9.7    5.7e-06   23.0   6.7    2.7  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    0.00093   16.8   0.1     0.0019   15.8   0.0    1.4  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.045        47      73      94 ..      98     119 ..      64     128 .. 0.69
   2 !   22.6   0.0   1.4e-08   1.4e-05      32      99 ..     139     206 ..     124     208 .. 0.92
   3 !   16.4   0.8   1.1e-06    0.0011      32      87 ..     173     228 ..     172     237 .. 0.86
   4 ?    0.1   0.4     0.098     1e+02     153     207 ..     324     378 ..     316     384 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.045
   TIGR02521  73 lyyqqlgelekAeesfrkAltl 94 
                  y+ ++++ ekA +s+rk+++ 
  MMETSP1061-20121228|8367_1  98 NYFIKEKDFEKASRSYRKGVNR 119
                 4788888999999999999975 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.4e-08
   TIGR02521  32 kirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                   +++L + +++ g+ ++ ++   kAle+dp+  +a   +A++  +lg+ e+A +  ++Al+++p n+
  MMETSP1061-20121228|8367_1 139 TLQTNLSMMFFKLGKHRQSRDVASKALEIDPDHVKARYRRAVAHRKLGNSEEAVADLKTALETDPVNA 206
                 56899**********************************************************99876 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 1.1e-06
   TIGR02521  32 kirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAees 87 
                 k+r   a++  + g+ e+A ++l++Ale dp +a + + lA + +++++ +kA+++
  MMETSP1061-20121228|8367_1 173 KARYRRAVAHRKLGNSEEAVADLKTALETDPVNAPVRKELASLQKEIQRAKKAQKE 228
                 567777888889999*****************************999999999864 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.098
   TIGR02521 153 kaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLw 207
                 + +k+ ++a+++d ++ +   + +el   +g  + A+  +  y ++ + + e+ +
  MMETSP1061-20121228|8367_1 324 RKAKAAKKAVEADDDSDDDTFTEKELAEMRGYKKTADGRITSYFSREQSAEEKAM 378
                 4455668999999999999999999999999999999999999888766555544 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   1.5   5.8e-10   5.9e-07     476     561 ..     149     235 ..     139     239 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 5.8e-10
   TIGR02917 476 lgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaark.gneeeavallekaae 561
                 ++ ++  + r    kAL+i+pd+++A+   A  +++ +n ++A++ ++ +l +dp n  + ++La+l+++    ++++++ l ka+ 
  MMETSP1061-20121228|8367_1 149 FKLGKHRQSRDVASKALEIDPDHVKARYRRAVAHRKLGNSEEAVADLKTALETDPVNAPVRKELASLQKEIqRAKKAQKESLRKAFS 235
                 555666777777789****************************************************98773556666788888876 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   6.7   5.6e-09   5.7e-06     125     251 ..      87     230 ..      63     309 .. 0.67
   2 ?   -6.0   7.7       3.5   3.6e+03      61      89 ..     310     338 ..     277     361 .. 0.68

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 5.6e-09
   TIGR00990 125 kyaaklkekGnkay.rnkdfdkaielyskall.lke.......d.Pv......yysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkf..aeskakeil 251
                 + a+ lke+Gn+++ ++kdf+ka   y k +  lk+       d  v        +n++  +  l++ ++  + + +ale+dpd+vka  rra a+ +lg   +a+ dl +  l  d  ++ + + +  l k    a++  ke l
  MMETSP1061-20121228|8367_1  87 AKALVLKEEGNNYFiKEKDFEKASRSYRKGVNrLKNfnkansgDeQVkallltLQTNLSMMFFKLGKHRQSRDVASKALEIDPDHVKARYRRAVAHRKLGNSEEAVADLKTA-LETDPVNAPVRKELASLQKEIqrAKKAQKESL 230
                 457889****9977578******999998875344322222222123222222579*****************************************************864.55566666666665554443311222234444 PP

  == domain 2    score: -6.0 bits;  conditional E-value: 3.5
   TIGR00990  61 eqkeskpklskkerrkrkdaekeaekkae 89 
                  ++++ +k  k+errk k a+k+ e   +
  MMETSP1061-20121228|8367_1 310 RKRKEDEKRRKEERRKAKAAKKAVEADDD 338
                 34445566667777777777776665333 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.8e-06    0.0019      58     120 ..     144     206 ..     140     225 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.8e-06
   TIGR02552  58 LaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                 L++ + +l+++ + ++  + a+ +d+d+ ++ y++a+ + +lg+ eeA ++Lk+a+e++  ++
  MMETSP1061-20121228|8367_1 144 LSMMFFKLGKHRQSRDVASKALEIDPDHVKARYRRAVAHRKLGNSEEAVADLKTALETDPVNA 206
                 67777888999999999999*************************************988443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.26
# Mc/sec: 2827.61
//
Query:       MMETSP1061-20121228|8366_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.3e-150  497.6   0.0   2.1e-149  496.3   0.0    1.6  1  TIGR00408 proS_fam_I: proline--tRNA ligase
      7e-27   92.3   0.7    1.1e-17   62.0   0.0    3.0  3  TIGR00409 proS_fam_II: proline--tRNA ligase
    6.2e-09   33.1   0.1    5.8e-06   23.3   0.0    2.4  2  TIGR00418 thrS: threonine--tRNA ligase
    0.00057   16.3   1.0     0.0025   14.3   0.0    2.3  3  TIGR00389 glyS_dimeric: glycine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  496.3   0.0    2e-152  2.1e-149       3     474 ..     160     661 .]     158     661 .] 0.92

  Alignments for each domain:
  == domain 1    score: 496.3 bits;  conditional E-value: 2e-152
   TIGR00408   3 ekeedfseWydqilekaelldyydvkGlvvllpnsfkiwekiqkllddkldeieveevyfPllipeselekEkeHikGFepEvylitq..........aG.....kkkLeeklalRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkhtrPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPvlvgrksekekFaGaeytvaieaimpdgralqiatsHdLgqnFaktFeikfenkegekayayqtsyGlstRvigaliliHsDdkGLvlPpkvapiqvvvipiifkkk...enkkvlelarkveekLkkleiRvelderdn.rpGkkfskaElkGiPlrlevgpkdieknavvvlrRd...ekkKvevsldeleekvkelleelkedlfkkAkelveekvkeveeleeikqalnek.......kgvvlvalkgeeeleeelkekvkatircieedldvldl..gqkCikcerkakkyvllaka 474
                  ++ d+s+Wy++i++ + l++ ++v+G++v+ p + ++w k+ + ldd ++e + e++yfPllip+s+l kE+eH++GF+ E +++t+          +G     + +Le++l++RPtsEt+++++++kw++s+rdLPlk+nq++nv+R+E++ trP+lRt+Efl++E+Ht+hatae a e++ ++++ Y++l e lLa+Pv+ g ks++e+FaGae t++iea+m++g alq +tsH Lgq F k+F+++f++ +ge++ ++ ts+G+stR++gali++HsDd GLvlPp+vapiqvv++pi  kk+    + ++ e+ +++   Lk+ +iRv++d+rd  r G+k+ ++E kG+Plr+e+gp+d+++n+ v   R    ++kK +++l + ++k  e le ++++l ++A+ ++++ ++e  + ee+k+al+         +g+ lv++k + e e+++k++ katirc +   + + +  g+kC ++++ a++++l+++a
  MMETSP1061-20121228|8366_1 160 ARAVDYSKWYNDIIRVTGLAETSPVRGCMVIKPWGMALWDKVRNELDDRIKEHGAENAYFPLLIPKSFLSKEAEHVDGFAKECAVVTHhrlkssdeedGGlvvdpEAELEDPLIVRPTSETMIWYMFRKWINSHRDLPLKVNQWANVMRWEMR-TRPFLRTSEFLWQEGHTAHATAEGAREDARTMMEEYASLCETLLAMPVVRGVKSPSERFAGAEDTFTIEALMQNGWALQSGTSHFLGQSFGKAFDVTFQDTDGEQKDVWGTSWGVSTRLLGALIMTHSDDEGLVLPPRVAPIQVVIVPIASKKNdeeGKAAMNEALDNLVAGLKAEGIRVKVDDRDFmRNGAKYFEWERKGVPLRIELGPRDVKNNSCVFKYRAgegSDKKKNIDLSDAASKASEGLEAMQQSLLEQAQSKLDNGITEDVSYEEMKTALESDeassypgNGLYLVPWKCDAENEDKIKTECKATIRCYPLAANSKGEheGKKCFYSGEDATHMALFGRA 661
                 5678**********************************************************************************9833333333223333333468*********************************************.****************************************************************************************************************************************************88888765434567788899******************99*********************************998333467**************************************9999****9998642233333699*************************9876655544349***************9985 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2      0.24   2.4e+02     340     368 ..     127     155 ..      85     189 .. 0.53
   2 !   27.5   0.0   2.9e-10     3e-07     101     186 ..     269     353 ..     185     376 .. 0.84
   3 !   62.0   0.0   1.1e-20   1.1e-17     412     563 ..     393     550 ..     379     555 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.24
   TIGR00409 340 kinikievlvdrtvaaledfaaganaddk 368
                 k +++ ++ + ++++++++++ ga+ d  
  MMETSP1061-20121228|8366_1 127 KQKQQQKQNKKQKQKQKQEASNGADDDSS 155
                 11112222223333333444444444444 PP

  == domain 2    score: 27.5 bits;  conditional E-value: 2.9e-10
   TIGR00409 101 erefvLgpthEEvitdlvkneiksYkqlPvnlYqiqtKfRDEiRPRfGllRgREFimKDaYsFhsdeeslkatyqkldeaYkkifs 186
                 e  +++ pt E  i  + ++ i+s ++lP+++ q  +  R E+R R   lR+ EF+ +++   h+++e ++++  ++ e Y  + +
  MMETSP1061-20121228|8366_1 269 EDPLIVRPTSETMIWYMFRKWINSHRDLPLKVNQWANVMRWEMRTRP-FLRTSEFLWQEGHTAHATAEGAREDARTMMEEYASLCE 353
                 5667889***************************************5.89*****************************9987765 PP

  == domain 3    score: 62.0 bits;  conditional E-value: 1.1e-20
   TIGR00409 412 GhiFkLGtkYskalkatfldeegkeqvlemGCYGiGvsRlvsaivEqkrDekGiiWpkaiAPyevvivvsnvkd.eeq.....kklaeevyselkakgvdvllDdrn.eraGvkfrdseliGiplavvvGkksldnkeiEvkkrrngekqlikkaelke 563
                 G    LG+ + ka+++tf+d +g+++ +    +G+  +Rl++a +  ++D++G++ p  +AP +vviv+   k+ +e+     ++ ++++ + lka+g+ v +Ddr+  r G+k  + e  G+pl++ +G + ++n++  +k+r+ + +++ k+ +l++
  MMETSP1061-20121228|8366_1 393 GTSHFLGQSFGKAFDVTFQDTDGEQKDVWGTSWGVS-TRLLGALIMTHSDDEGLVLPPRVAPIQVVIVPIASKKnDEEgkaamNEALDNLVAGLKAEGIRVKVDDRDfMRNGAKYFEWERKGVPLRIELGPRDVKNNSCVFKYRAGEGSDKKKNIDLSD 550
                 566679*********************999999986.8******************************988776433311111455678899999***********967********************************999998888887777765 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.2   0.00036      0.37     174     298 ..     170     312 ..      48     355 .. 0.75
   2 !   23.3   0.0   5.7e-09   5.8e-06     424     557 ..     404     551 ..     389     595 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00036
   TIGR00418 174 rklgkeleLfsfeeevgpGlvlwlpkGalirklledfvrekllkrgyeevetPila.dlelweisghldkykermfrfkeee...................ekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEks 298
                   +++  +L++ +     G ++  p G  + + + + + ++ ++ g+e+ + P l+ ++ l +  +h+d +  +   +++++                   e  l+++p        +f++ + s+rdLPl++ + + v R E++
  MMETSP1061-20121228|8366_1 170 NDIIRVTGLAETS--PVRGCMVIKPWGMALWDKVRNELDDRIKEHGAENAYFPLLIpKSFLSKEAEHVDGFAKECAVVTHHRlkssdeedgglvvdpeaelEDPLIVRPTSETMIWYMFRKWINSHRDLPLKVNQWANVMRWEMR 312
                 5556666666655..34567777777777777777777777777777777777766244566777788888776655555545566677788888887777788999999999999**************************987 PP

  == domain 2    score: 23.3 bits;  conditional E-value: 5.7e-09
   TIGR00418 424 erfdltyvdedekekrPviiHrailGsieRfiaiLlEkaagel....PlwLaPvQvrvipvsekhld.........yakkvaeklkkegirvdvddrn.eklgkkiReaqkekipyvlvvGdkEveeeavtvRerk...eekkekmsleel 557
                 + fd+t+ d d+++k    +     G   R++++L+  ++ +     P  +aP+Qv+++p++ k  d         +  +++  lk+egirv+vddr+  + g+k  e + + +p+ + +G ++v++++   + r+   ++kk++++l + 
  MMETSP1061-20121228|8366_1 404 KAFDVTFQDTDGEQKD---VWGTSWGVSTRLLGALIMTHSDDEglvlPPRVAPIQVVIVPIASKKNDeegkaamneALDNLVAGLKAEGIRVKVDDRDfMRNGAKYFEWERKGVPLRIELGPRDVKNNSCVFKYRAgegSDKKKNIDLSDA 551
                 6688888888888887...5567778888999999866554433444**************96543322222111155689999*************845788999999999999999999999999766555554435566666766665 PP

>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.3   1.1       2.1   2.1e+03     362     392 ..     111     141 ..      75     149 .. 0.53
   2 ?   -0.3   0.0     0.061        62     160     213 ..     275     326 ..     271     335 .. 0.84
   3 !   14.3   0.0   2.4e-06    0.0025     462     538 ..     444     529 ..     424     553 .. 0.80

  Alignments for each domain:
  == domain 1    score: -5.3 bits;  conditional E-value: 2.1
   TIGR00389 362 kkllGpkfrkdakkvesalenlseddleeve 392
                 k  l p f ++ kk +++ ++  ++++++++
  MMETSP1061-20121228|8366_1 111 KAELDPTFNQKPKKQQKQKQQQKQNKKQKQK 141
                 4456666776666666554444433333332 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.061
   TIGR00389 160 RPEtAqGiFinFkkllefkreklPFgvaqiGksfRnEisprqgllRvrEFeqaE 213
                 RP     i+  F+k ++++r  lP  v q     R E+ +r + lR+ EF   E
  MMETSP1061-20121228|8366_1 275 RPTSETMIWYMFRKWINSHR-DLPLKVNQWANVMRWEMRTRPF-LRTSEFLWQE 326
                 66666667778999998765.7*******************98.6*****8766 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 2.4e-06
   TIGR00389 462 vlrlkpkvaPikvlvlplvnkee.......lkeiakeiakaLrkeeiiikyddsgs..iGkrYaraDeiGtpfavtiDfetleDet 538
                  l l+p+vaPi+v+++p+ +k++       ++e   +++  L+ e+i++k+dd +    G +Y   +  G+p  + +    +++++
  MMETSP1061-20121228|8366_1 444 GLVLPPRVAPIQVVIVPIASKKNdeegkaaMNEALDNLVAGLKAEGIRVKVDDRDFmrNGAKYFEWERKGVPLRIELGPRDVKNNS 529
                 5789**************9876433444447788888999999**********998556999999999999988877666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       409  (0.0997075); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.49u 0.18s 00:00:00.67 Elapsed: 00:00:00.33
# Mc/sec: 2643.78
//
Query:       MMETSP1061-20121228|8368_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1543.26
//
Query:       MMETSP1061-20121228|8369_1  [L=2375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.92u 0.13s 00:00:01.05 Elapsed: 00:00:00.61
# Mc/sec: 5138.92
//
Query:       MMETSP1061-20121228|8371_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-22   76.4   0.0    3.1e-22   76.1   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.8e-06   24.8   0.0    4.7e-06   24.0   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0   1.5e-25   3.1e-22       2     200 ..      50     249 ..      49     265 .. 0.79

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 1.5e-25
   TIGR03903   2 tghkvaikllRedaa.eeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveG..rtlrevLaadG......aLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepv.taksDlYaWGLivleCLtGkrvvqGasvaevlyk 200
                 tg+ vaik +    +  e        Rei+l  +L hPn+v+LlD  +a +g l+ vFeyv+   +t  +  +          Lp a+    + q++ ++ + h   ++hRDLkP+n++++  ++ ++ k+ DFG++ L +  +         t ev+ +  Y aPe L g     +  D+++ G i+ e  tG +   G s  + ++k
  MMETSP1061-20121228|8371_1  50 TGDTVAIKRIPFADStPEGGVPCNVIREISLLRELDHPNVVKLLDIIQAHPGGLYLVFEYVAHdlKTFMDQYQKSDdiservGLPQATVKSFLRQIIAGVGCCHTFRILHRDLKPHNLLIT--GDGKQVKLADFGLARLSAIPNG------PYTFEVV-TLWYRAPELLLGANRySTSVDVWSVGCIFAEMATGMPLFPGRSDIDQIFK 249
                 67777777665444414444556778***********************************86447988877654311122158888888999**************************97..677889*******998654444......4456666.779******99976515567*********************996665554 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   2.3e-09   4.7e-06      93     139 ..     136     187 ..      75     191 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 2.3e-09
   TIGR03724  93 l...ellkevGelvgklHkagivhgDlttsNiivk..ddklyliDfGLgkks 139
                     ++l+++   vg +H  +i+h Dl ++N++++  ++++ l DfGL++ s
  MMETSP1061-20121228|8371_1 136 AtvkSFLRQIIAGVGCCHTFRILHRDLKPHNLLITgdGKQVKLADFGLARLS 187
                 144589999999**********************6447899********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1536.73
//
Query:       MMETSP1061-20121228|8372_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       313  (0.0763042); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 2129.66
//
Query:       MMETSP1061-20121228|8373_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 832.90
//
Query:       MMETSP1061-20121228|8374_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1251.90
//
Query:       MMETSP1061-20121228|8375_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1272.75
//
Query:       MMETSP1061-20121228|8378_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 978.92
//
Query:       MMETSP1061-20121228|8377_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   12.0   0.0      0.055   11.3   0.0    1.4  1  TIGR02908 CoxD_Bacillus: cytochrome c oxidase, subunit IVB


Domain annotation for each model (and alignments):
>> TIGR02908  CoxD_Bacillus: cytochrome c oxidase, subunit IVB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.3e-05     0.055      20      78 ..      37      96 ..      21     110 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
   TIGR02908 20 knaeemkkqvvafalmilltl.iaflavaleevdklfviplilllaavqvafqlyyfmhm 78
                 ++ e+kk v+a     + t+  ++++va+e+ +++f +    lla++ v+      + +
  MMETSP1061-20121228|8377_1 37 AQSPELKKGVIAAMGAAVPTVfSSLATVATEGTSEWFGVDDTRLLAVLFVVHWAILTLWL 96
                566789999887655555555157889**************9999999988765555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 812.77
//
Query:       MMETSP1061-20121228|8382_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 906.71
//
Query:       MMETSP1061-20121228|8376_1  [L=1020]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1020 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       376  (0.0916626); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.15s 00:00:00.71 Elapsed: 00:00:00.42
# Mc/sec: 3205.45
//
Query:       MMETSP1061-20121228|8380_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   14.2   7.9     0.0017   13.9   5.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0045   12.5   6.4     0.0052   12.3   4.4    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.022   12.8   3.7      0.032   12.2   2.5    1.2  1  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
      0.068   10.9   1.7      0.093   10.5   0.9    1.4  1  TIGR02978 phageshock_pspC: phage shock protein C


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   5.5   1.7e-06    0.0017     249     347 ..     106     204 ..      73     212 .. 0.53

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.7e-06
   TIGR02168 249 keaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeele 347
                  +++ +++el++ ++   +e+e l++ek+ le+++++l++e +++ +e ++l++ + i++er++q+ +e+++  +  +++e + ++le+ + +l+  l+
  MMETSP1061-20121228|8380_1 106 HQSTLQINELQNVVNSQGAEIEGLKSEKAGLEDSFNRLKTEHDKVVNENKTLKRAVVIQQERQNQALSEINAGRQFKAQAEDRIKKLEQLVLSLRYHLQ 204
                 333344555555555555555555555555555555555555555555555555555555555544444444444444444444444443333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   4.4     5e-06    0.0052     355     452 ..     107     204 ..      69     213 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5e-06
   TIGR02169 355 klkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeik 452
                 + + +++el+++ +   ae+e ++ e a l + ++ lk++ +k+ +e + lkr     +e+++++ +e++  ++  +++e++i++le+ + +l+++++
  MMETSP1061-20121228|8380_1 107 QSTLQINELQNVVNSQGAEIEGLKSEKAGLEDSFNRLKTEHDKVVNENKTLKRAVVIQQERQNQALSEINAGRQFKAQAEDRIKKLEQLVLSLRYHLQ 204
                 22333444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.5   3.1e-05     0.032      75     160 ..     103     187 ..      95     188 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.1e-05
   TIGR02894  75 raaesltledviefLqnlketl.eeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedyetlikimdrarklavveed 160
                 r +++ tl+  i+ Lqn+ +++  e e l++ek  l+++ + l+++ +++ +e+++lk+   + +e  ++ ++ ++  r++  + ed
  MMETSP1061-20121228|8380_1 103 RMEHQSTLQ--INELQNVVNSQgAEIEGLKSEKAGLEDSFNRLKTEHDKVVNENKTLKRAVVIQQERQNQALSEINAGRQFKAQAED 187
                 334444554..66778776655167899**************************************999999999999998877665 PP

>> TIGR02978  phageshock_pspC: phage shock protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.9     9e-05     0.093      66     117 ..     152     206 ..     139     210 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 9e-05
   TIGR02978  66 yeeeevkkkfwqagetpkealrevk..eelr.rleerlrevEryvtssefklere 117
                  e++++k+ +  + e++++al+e++  ++++ + e r++++E++v s +++l+ +
  MMETSP1061-20121228|8380_1 152 NENKTLKRAVVIQQERQNQALSEINagRQFKaQAEDRIKKLEQLVLSLRYHLQAQ 206
                 44555788888888889999*9998335675379****************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1182.62
//
Query:       MMETSP1061-20121228|8384_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-10   36.3   0.6    4.1e-09   32.7   0.0    2.0  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    4.4e-08   30.8   1.7    4.4e-08   30.8   1.2    3.1  4  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    5.1e-06   24.0   2.2    0.00037   18.0   0.3    3.0  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0     3e-12   4.1e-09     278     506 ..      63     294 ..      55     301 .. 0.89
   2 !    1.9   0.1    0.0062       8.5     630     736 ..     329     437 ..     305     453 .. 0.70

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 3e-12
   TIGR02917 278 edAretlqaalksapeylpalllaGaseyqlgeleqAeqylnqilkaaP...nshqArrllAaiqLkegkvdeaiatlspalekdsddsallsllGeayLekgdfekAaeylakaseldPenaaaktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpd.naslynllgaiylgkkdlakAreafekALkiepdffpAlanLA 506
                  +A++tl +  +  ++  + l +a   +y++ +++++ q+ ++  + +P   n  +A+   +++  ++ +     + + +  e +++++      G  y +   +  A++ + +a+ ldP  + a ++ g s+ a  ++ +a+a++++A +l+p    + l ++++yLr++ +  a   +k+ + +  + ++++    g   l++k++ +A + f +AL  + + ++A+++L+
  MMETSP1061-20121228|8384_1  63 GSALDTLWNKFRLRNS-PEVLAMAAQNAYRRYDWNASLQFCEELASVDPlssNTNKAAFCHVSTLVQLHRKRPLFRLAHEWVEIAPKEARSWFAVGAYYYACERYHVAQRHFCRATRLDPHCVEAWIAFGASFAACDESDQALASFRAAQRLAPGNHTSLLYIAMEYLRTNHLVLAQHFLKAANDSSGGtDPLVKSETGVLKLNQKEYFQAIKWFLMALGGDAEWISAMSKLL 294
                 5677777666666666.6677999999999999999999999999999944344556667788888899999999999999999******999****************************************************************************************9998776438*************************************99987 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.0062
   TIGR02917 630 lqpdsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllkelekqkpka.algfeleGdlalrqkd.ykaAiqaykkalkrapss 736
                 ++p+  + l  la++y+  +  ++A   l++ L+lk+       l   L l+   ++    ++ + ++q   a ++   ++ +   r+++ + +Ai+ y++ l+++p +
  MMETSP1061-20121228|8384_1 329 QDPYWEPTLFNLAHAYRKERHFDAAVVCLEQCLALKETSSAHSALGYCLHLQSTVISTWTHVAMRKQQQSFRArPQDETQVRNERRRSNRlLHRAIDSYHQSLAKKPDD 437
                 5788888899999999999999999999999999998877766777777777777777777766655555443144444444445555543467777777777777765 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   1.2   3.2e-11   4.4e-08      20     116 ..     152     248 ..     137     257 .. 0.91
   2 ?   -3.6   0.0       1.3   1.8e+03      64      78 ..     265     279 ..     260     280 .. 0.71
   3 ?    1.3   0.1      0.04        54      71     116 ..     353     380 ..     326     397 .. 0.58
   4 ?   -3.1   0.0      0.92   1.3e+03      69      87 ..     421     439 ..     418     441 .. 0.85

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 3.2e-11
   TIGR02552  20 aiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieia 116
                 + +a++ + y+  +y  A++ F+  + ldp   + w++ +a++ a++e ++A+a + +a  l + ++  ++++a  +l  +    A+ +Lk+a + +
  MMETSP1061-20121228|8384_1 152 SWFAVGAYYYACERYHVAQRHFCRATRLDPHCVEAWIAFGASFAACDESDQALASFRAAQRLAPGNHTSLLYIAMEYLRTNHLVLAQHFLKAANDSS 248
                 5677777889999******************************************************************************998766 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.3
   TIGR02552  64 alkeyeeAiaaYala 78 
                  +key +Ai+ + +a
  MMETSP1061-20121228|8384_1 265 NQKEYFQAIKWFLMA 279
                 567888888877766 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.04
   TIGR02552  71 AiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieia 116
                 A+ + + +                  lal+e+ +A +aL  ++ ++
  MMETSP1061-20121228|8384_1 353 AVVCLEQC------------------LALKETSSAHSALGYCLHLQ 380
                 33333333..................45566666666666665555 PP

  == domain 4    score: -3.1 bits;  conditional E-value: 0.92
   TIGR02552  69 eeAiaaYalaaaldlddpr 87 
                  +Ai+ Y   +a ++ddp 
  MMETSP1061-20121228|8384_1 421 HRAIDSYHQSLAKKPDDPF 439
                 6899***999999999995 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.3   2.7e-07   0.00037      58     188 ..     143     272 ..     139     278 .. 0.64
   2 !    4.0   0.0    0.0051         7      36      76 ..     339     378 ..     322     411 .. 0.84
   3 ?   -2.9   0.0      0.62   8.5e+02      83      99 ..     422     438 ..     416     452 .. 0.61

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.7e-07
   TIGR02521  58 leldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesll.elaelklkkgqyaeA 188
                 +e++pk+a+ + a + yy    + + A+++f +A +l+p   ++   +G+   +  + ++A + f+aA +    +    s+  +++ +l+ ++   a++ l+ a +   +  + ++ e   lkl++++y +A
  MMETSP1061-20121228|8384_1 143 VEIAPKEARSWFAVGAYYYACERYHVAQRHFCRATRLDPHCVEAWIAFGASFAACDESDQALASFRAAQRLA--PGNHTSLLYIAMEYLRTNHLVLAQHFLKAANDSSGGTDPLVKsETGVLKLNQKEYFQA 272
                 567777777777777777777777777777777777777777777777777777777777777777775544..4444556667777777777777777777776665544443331334456666666555 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0051
   TIGR02521  36 qLaleYleqgdlekAkenlekAleldpkdadanlalAlyyq 76 
                 +La +Y ++ ++++A   le+ l+l+ + ++a++al++ + 
  MMETSP1061-20121228|8384_1 339 NLAHAYRKERHFDAAVVCLEQCLALK-ETSSAHSALGYCLH 378
                 7999999**************99987.56789999998764 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 0.62
   TIGR02521  83 kAeesfrkAltlkpnng 99 
                 +A +s++++l+ kp+++
  MMETSP1061-20121228|8384_1 422 RAIDSYHQSLAKKPDDP 438
                 45555555555555443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.24
# Mc/sec: 3151.24
//
Query:       MMETSP1061-20121228|8381_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 784.99
//
Query:       MMETSP1061-20121228|8387_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 419.54
//
Query:       MMETSP1061-20121228|8385_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|8390_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 437.96
//
Query:       MMETSP1061-20121228|8391_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 224.87
//
Query:       MMETSP1061-20121228|8392_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1727.34
//
Query:       MMETSP1061-20121228|8395_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1842.57
//
Query:       MMETSP1061-20121228|8396_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1394.49
//
Query:       MMETSP1061-20121228|8397_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|8394_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 3167.74
//
Query:       MMETSP1061-20121228|8393_1  [L=903]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.28
# Mc/sec: 4256.65
//
Query:       MMETSP1061-20121228|8400_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 597.09
//
Query:       MMETSP1061-20121228|8405_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1319.89
//
Query:       MMETSP1061-20121228|8402_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.4    6.6   5.5       0.51    6.2   3.8    1.1  1  TIGR01005 eps_transp_fam: exopolysaccharide transport protein family


Domain annotation for each model (and alignments):
>> TIGR01005  eps_transp_fam: exopolysaccharide transport protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   3.8   0.00012      0.51     407     449 ..     125     167 ..     117     172 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00012
   TIGR01005 407 aykvadaRvvseAaVPeePvkPKkltvvalaavlglllgaifa 449
                 a kva+a v  +  VP eP  P  ++vv+ a  ++ +++a+ +
  MMETSP1061-20121228|8402_1 125 APKVAEAPVSAPVLVPDEPLAPDTGMVVSSAKSASTVVSAALS 167
                 668999*****************************99998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1161.50
//
Query:       MMETSP1061-20121228|8409_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 279.21
//
Query:       MMETSP1061-20121228|8410_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.0   0.1      0.025   11.9   0.1    1.1  1  TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF


Domain annotation for each model (and alignments):
>> TIGR02325  C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.1     6e-06     0.025     180     207 ..      57      84 ..      29      91 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6e-06
   TIGR02325 180 kstrisArladaedvarLelpkgapvLv 207
                  +trisA ++da+dv+  +lp+g++ + 
  MMETSP1061-20121228|8410_1  57 ATTRISASTPDARDVHLTKLPNGTIAVR 84 
                 579********************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 404.48
//
Query:       MMETSP1061-20121228|8407_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-34  115.5   0.1    5.3e-34  115.4   0.1    1.0  1  TIGR00906 2A0303: cationic amino acid transport permease
    7.7e-27   92.1   7.9      1e-26   91.7   5.5    1.0  1  TIGR00909 2A0306: amino acid transporter
    3.5e-07   27.1   2.5    4.5e-07   26.7   1.7    1.0  1  TIGR03810 arg_ornith_anti: arginine/ornithine antiporter
    1.7e-06   24.9   3.9    2.1e-06   24.6   2.7    1.0  1  TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family
      1e-05   22.3   3.4    1.2e-05   22.1   2.4    1.1  1  TIGR00913 2A0310: amino acid permease (yeast)
    0.00013   18.3   0.0    0.00014   18.3   0.0    1.1  1  TIGR00911 2A0308: L-type amino acid transporter
    0.00035   17.3   3.5    0.00043   17.0   2.4    1.1  1  TIGR01773 GABAperm: GABA permease
    0.00092   16.0   6.7     0.0011   15.7   4.6    1.0  1  TIGR00908 2A0305: ethanolamine permease
  ------ inclusion threshold ------
      0.038   10.7   5.1      0.047   10.4   2.4    1.6  2  TIGR03428 ureacarb_perm: permease, urea carboxylase system
       0.22    8.2   5.3       0.25    8.0   3.7    1.0  1  TIGR00907 2A0304: amino acid permease


Domain annotation for each model (and alignments):
>> TIGR00906  2A0303: cationic amino acid transport permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.4   0.1   1.3e-36   5.3e-34      33     136 ..      44     148 ..      23     171 .. 0.92

  Alignments for each domain:
  == domain 1    score: 115.4 bits;  conditional E-value: 1.3e-36
   TIGR00906  33 lttldlialgvGsvlGaGvyvlaGevarndsGPaivlsfliaalaavlaglcyaefgarvPka.GsaylysyvtvGelwafitgwnlileyviGtaavarawsat 136
                  t++dl+ +gvG ++G+G++vl+G + ++ +GPa  lsf i++laa+ +g+++aef+ r+P+  Gs+y+y+yv++Ge  a +++  l ley + +aavar+w   
  MMETSP1061-20121228|8407_1  44 YTLWDLVSVGVGGTVGSGIFVLTGYINHHYAGPATFLSFAISGLAALCSGISFAEFSGRLPRIeGSTYTYAYVSMGEYAAVLAAACLTLEYGVSGAAVARSWGDK 148
                 689**********************************************************9549*************************************754 PP

>> TIGR00909  2A0306: amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.7   5.5   2.5e-29     1e-26       6     106 ..      45     147 ..      42     153 .. 0.94

  Alignments for each domain:
  == domain 1    score: 91.7 bits;  conditional E-value: 2.5e-29
   TIGR00909   6 glfdlvllgigaiiGtgifvvtgiaagk.agPavilsfllagliallvaLvyaelaaalPv.aGsvYtyayealGelvafiiGwvlileytvavavvavgfse 106
                 +l+dlv +g+g+++G+gifv+tg++  + agPa  lsf ++gl+al +++++ae+++ lP+  Gs+Ytyay+++Ge++a ++  +l ley+v+ a+va +++ 
  MMETSP1061-20121228|8407_1  45 TLWDLVSVGVGGTVGSGIFVLTGYINHHyAGPATFLSFAISGLAALCSGISFAEFSGRLPRiEGSTYTYAYVSMGEYAAVLAAACLTLEYGVSGAAVARSWGD 147
                 69*********************99865278*****************************856**************************************86 PP

>> TIGR03810  arg_ornith_anti: arginine/ornithine antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   1.7   1.1e-09   4.5e-07       5      85 ..      46     126 ..      43     136 .. 0.93

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 1.1e-09
   TIGR03810   5 llaltalvvgssiGsGifslasdlaaaaaaGavligWvitgvGvlalalslqnlakkkPeldgGvyayakaGfGefmGfss 85 
                 l  l+++ vg ++GsGif l+  + +  a  a +++++i g+  l  ++s+ +++ + P ++g  y+ya   +Ge++   +
  MMETSP1061-20121228|8407_1  46 LWDLVSVGVGGTVGSGIFVLTGYINHHYAGPATFLSFAISGLAALCSGISFAEFSGRLPRIEGSTYTYAYVSMGEYAAVLA 126
                 56788889*****************99999999*******************************************97665 PP

>> TIGR00905  2A0302: transporter, basic amino acid/polyamine antiporter (APA) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   2.7   5.2e-09   2.1e-06      11      91 ..      46     126 ..      42     140 .. 0.91

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 5.2e-09
   TIGR00905  11 lvaltalvvgsmiGsGifsLpqnlasvagagavligWiitgvGmlalAfvfaklatkkpeldgGvyaYaregfgeyigFss 91 
                 l  l+ + vg ++GsGif L+  + +  +  a  ++ +i+g+ +l    +fa+ + + p+ +g  y+Ya +++gey+   +
  MMETSP1061-20121228|8407_1  46 LWDLVSVGVGGTVGSGIFVLTGYINHHYAGPATFLSFAISGLAALCSGISFAEFSGRLPRIEGSTYTYAYVSMGEYAAVLA 126
                 567888999****************998888999******************************************87665 PP

>> TIGR00913  2A0310: amino acid permease (yeast)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   2.4   2.9e-08   1.2e-05      12      79 ..      52     119 ..      48     158 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.9e-08
   TIGR00913  12 ialGgaigtGllvgsgka.lstaGPaglligyllvgsiiyaviqslgElatlipvssgsfatyasrfvd 79 
                 + +Gg++g G++v +g    + aGPa +++++++ g  +++   s++E++  +p   gs+ tya   + 
  MMETSP1061-20121228|8407_1  52 VGVGGTVGSGIFVLTGYInHHYAGPA-TFLSFAISGLAALCSGISFAEFSGRLPRIEGSTYTYAYVSMG 119
                 679*************8615679996.689*************************99999888865544 PP

>> TIGR00911  2A0308: L-type amino acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   3.3e-07   0.00014      46     131 ..      42     127 ..       2     163 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3.3e-07
   TIGR00911  46 keitllsgvsiivgtiiGsGiFvspkgvlkeagsvGlalivWavtgilsivGalvYaElGttipk.sGGeyaYllevfgklkaFlkl 131
                  + tl + vs+ vg  +GsGiFv +  + ++   +  +++ +a++g+ ++   +++aE+   +p+ +G  y+Y     g+ +a l+ 
  MMETSP1061-20121228|8407_1  42 PSYTLWDLVSVGVGGTVGSGIFVLTGYINHHYAGP-ATFLSFAISGLAALCSGISFAEFSGRLPRiEGSTYTYAYVSMGEYAAVLAA 127
                 556888899**************987776665555.57999*********************9994577899987777777776654 PP

>> TIGR01773  GABAperm: GABA permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   2.4     1e-06   0.00043      22      91 ..      52     123 ..      44     141 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1e-06
   TIGR01773  22 lsiagvigaglfvgsgvai.aeagpaallayllagllvvlimrmlgemavaspd.tgsfstyadkaigrwag 91 
                 + + g +g+g+fv +g +  + agpa++l+++++gl  +     ++e++   p   gs  tya  ++g++a 
  MMETSP1061-20121228|8407_1  52 VGVGGTVGSGIFVLTGYINhHYAGPATFLSFAISGLAALCSGISFAEFSGRLPRiEGSTYTYAYVSMGEYAA 123
                 6789***********99862579****************9999*******999747*************996 PP

>> TIGR00908  2A0305: ethanolamine permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   4.6   2.8e-06    0.0011      12     109 ..      47     146 ..      41     155 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2.8e-06
   TIGR00908  12 fqllaiavg.lvisGeyaGWnyg.lasagtlGfvvatllvavlyltfifslaelataiPkagGs.fefarrafGplGGflaGvailvefvfappaialaiG 109
                 + l++++vg  v sG ++   y     ag+  f+ +  +     l+   s+ae++  +P+ +Gs + +a  ++G +   la  ++ +e+ ++ +a+a + G
  MMETSP1061-20121228|8407_1  47 WDLVSVGVGgTVGSGIFVLTGYInHHYAGPATFL-SFAISGLAALCSGISFAEFSGRLPRIEGStYTYAYVSMGEYAAVLAAACLTLEYGVSGAAVARSWG 146
                 7777777753677888764444303345555443.44444555578889***********9996599******************************8877 PP

>> TIGR03428  ureacarb_perm: permease, urea carboxylase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   2.4   0.00011     0.047      33     112 ..      61     142 ..      54     145 .. 0.88
   2 ?    6.7   0.7    0.0015      0.62      51      98 ..     111     156 ..     106     160 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00011
   TIGR03428  33 tifqlfgl.gygfagpaffwtwpvvlvgqllvalnfaelaaryp.isgaiyqwsrrlggevvgwfagwlmilaqivtaaaaa 112
                  if l g+  + +agpa f ++++  +  l   ++fae++ r p i g+ y ++    ge    +a   ++l   v+ aa a
  MMETSP1061-20121228|8407_1  61 GIFVLTGYiNHHYAGPATFLSFAISGLAALCSGISFAEFSGRLPrIEGSTYTYAYVSMGEYAAVLAAACLTLEYGVSGAAVA 142
                 577777753689*******************************9899**************999999999988888777765 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0015
   TIGR03428  51 wtwpvvlvgqllvalnfaelaarypisgaiyqwsrrlggevvgwfagw 98 
                 +t++ v +g++   l+ a l+  y +sga    +r  g +v+ w a w
  MMETSP1061-20121228|8407_1 111 YTYAYVSMGEYAAVLAAACLTLEYGVSGAAV--ARSWGDKVLEWTAQW 156
                 799999**********************975..788999*******99 PP

>> TIGR00907  2A0304: amino acid permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   3.7   0.00062      0.25      16     102 ..      46     131 ..      41     147 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00062
   TIGR00907  16 lwsslslafs.ilnvytglsttlnlglssGGavsivygliiagaisicialslaElvsayPtsGglyfwskklapkrqvpllawvtGw 102
                 lw  +s++++  +++   + t ++    +G a+ +  ++ i+g+ ++c ++s+aE++   P   g  ++ + ++  +++ +la  +  
  MMETSP1061-20121228|8407_1  46 LWDLVSVGVGgTVGSGIFVLTGYINHHYAGPATFL--SFAISGLAALCSGISFAEFSGRLPRIEGSTYTYAYVSMGEYAAVLAAACLT 131
                 56666666642445555667777777777666554..6779************************************99999876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 769.94
//
Query:       MMETSP1061-20121228|8411_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1528.87
//
Query:       MMETSP1061-20121228|8406_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-13   48.4   0.0    2.6e-13   47.1   0.0    1.6  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.8e-10   36.4   0.0    6.9e-10   35.1   0.0    1.5  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    3.3e-08   30.6   0.0    3.2e-07   27.3   0.0    2.0  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    9.2e-08   28.6   0.0    1.4e-07   28.0   0.0    1.2  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    9.6e-08   29.0   0.6     0.0014   15.2   0.2    2.6  3  TIGR00643 recG: ATP-dependent DNA helicase RecG
    0.00012   19.0   0.0      0.014   12.2   0.0    2.4  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
      0.002   14.6   0.2       0.14    8.5   0.0    2.4  2  TIGR00595 priA: primosomal protein N'
     0.0073   12.5   0.0     0.0073   12.5   0.0    2.9  3  TIGR00580 mfd: transcription-repair coupling factor
  ------ inclusion threshold ------
      0.013   11.6   0.0      0.013   11.6   0.0    2.9  3  TIGR00631 uvrb: excinuclease ABC subunit B


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   5.7e-16   2.6e-13       8     345 ..     134     487 ..     129     519 .. 0.73

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 5.7e-16
   TIGR01389   8 vFGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvP..aLllk.......gl.tvvisPLisLmkDqvdqLraaGveaaalnstlsak.eaqeilkalaagelklLYvaPerleqdkf.lellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkap.vialtatadaevredivekLelkdaaef...vssfdR....enla..fsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkae.aillyseaDlallkrlieesea 345
                   G+e+  + q + i ++l+g+d+++   tG Gk l + vP   Ll+k       g+ ++++sP   L        ++   e ++l  +l +   +++ + +   + ++++  +P rl+ +    + +   ++ ++ +Dea  + + G     + +++   ++++pk+   + + at +++v++   ++L+++ ++ +   v+s ++    enl   +    + ++   l ++lkk+++k  +++ ss + v   ae L+   i++l  h+  ++ +R  +  +F++++++ ++ t     G+d ++v ++i +d P +  +y   +GR  R    +  a+++ ++++  +l++l   ++ 
  MMETSP1061-20121228|8406_1 134 KMGHETMTKIQSKSIPSLLAGKDLIGAAQTGSGKTLAFLVPivELLRKarfhtrnGTgAMILSPTRELAMQIYGVCKELLGEKSTLTYGLIMGgANRKTEAERLRKGVNIVIATPGRLLDHLQnSQGFVTRNLLVFCMDEADRILEIGF--EDDLRAI---VKMLPKERqTMLFSATQTKKVEDL--ARLSINPKNAIyveVESNNKeattENLEqgYVTCPSDKRFLLLFTFLKKNKNKKIMVFLSSCNSVKFHAELLNYIDIPVLDIHGRQKQVKRTTTFFQFQKAKTATLLCTDVAARGLDIPEVDWIIQFDPPDDPREYVHRVGRTARGATGSGrALMFLTPQETGFLRYLQSAARV 487
                 579**************************************444665422222226634777998888654444445443344555555555514555566677888**********98653313446667888899*********995..4555554...455555554777888888887653..345554444431122333321111455422667777888888899****************************************************************************************************98887614555567777777776555555 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.5e-12   6.9e-10      14     355 ..     140     468 ..     132     486 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.5e-12
   TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpsliela.akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgn.leeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskill 355
                 +++ Q + + ++ +g++ +  a TG+GKTla  +p++  l  a+ ++++g  ++ ++P + La +i    ++ + e + +++ +l  G ++ ++ a++ +k  +i++ Tp  l   l  +++  + ++l +  +DE   +l+    d l+   a ++ l +e +++  sAT  + +e++a++ ++ +   +a  v+++++++++ ++ l++   + P        +l + l++ +k++  +vF    +    ++ +Ll+  +    ++   Hg  ++ +R+    ++++ k  +++cT     G+D  +vd +iq   p      + R+GR++     + ++l+
  MMETSP1061-20121228|8406_1 140 MTKIQSKSIPSLLAGKDLIGAAQTGSGKTLAFLVPIVELLRkARFHTRNGTGAMILSPTRELAMQIYGVCKELLGE-KSTLTYGLIMGGANRKTEAERLRKGVNIVIATPGRLLDHLQ-NSQGFVTRNLLVFCMDEADRILEIGFEDDLR---AIVKMLPKERQTMLFSATQTKkVEDLARLSINPK---NAIYVEVESNNKEATTENLEQGYVTCPSDKR--FLLLFTFLKK-NKNKKIMVFLSSCNSV-KFHAELLNYIDI---PVLDIHGRQKQVKRTTTFFQFQKAKTATLLCTDVAARGLDIPEVDWIIQFDPPDDPREYVHRVGRTARGATGSGRALM 468
                 567899999999******************9877776655544556679******************999999888.678999999************************98744333.33344557899999********975544444...67788888999999****7651555666555554...5889999888888888889996666664433..2333333333.5667788998776554.456677776655...555559***********************************************************9887777777655 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.0   7.1e-10   3.2e-07       5     342 ..     133     482 ..     131     509 .. 0.71

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 7.1e-10
   TIGR00614   5 kvfglesfrpvqlevinavlegrdalvvmatGgGksLCyqlpav.........vsdglt.lvisPLisLmeDqvlqLkasdisatlLnsaqskeeakevladl........kdgklkllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykalgsLkqklPs.vpviaLtatasssvreDilklLklkk.pqvtitsfdRpnlkyeveekks.....kiledllkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglks.ecvlfyapaDvallrrll 342
                 ++ g+e   + q + i + l+g+d +    tG Gk L + +p v         + +g + +++sP + L        +  ++   lL+ +++      ++               + ++  tP ++  + +  q +  +++l ++ +Dea  i + G  f +d +a+    ++lP+    +  +at +++v++ +  +++ k+  +v + s +++    ++e+ +      k    l  f++ + k k  +++  s ++v+  a+ L+  ++  +  h   ++ +r++   +f++ +   ++ t     G++ p+v  +i ++ p +  +Y   +GR  R    s ++++f +p++  +lr l 
  MMETSP1061-20121228|8406_1 133 NKMGHETMTKIQSKSIPSLLAGKDLIGAAQTGSGKTLAFLVPIVellrkarfhTRNGTGaMILSPTRELAM------QIYGVCKELLGEKSTLT-YGLIMGGAnrkteaerLRKGVNIVIATPGRLLDHLQNSQGF-VTRNLLVFCMDEADRILEIG--FEDDLRAI---VKMLPKeRQTMLFSATQTKKVEDLARLSINPKNaIYVEVESNNKEATTENLEQGYVtcpsdKRFLLLFTFLK-KNKNKKIMVFLSSCNSVKFHAELLNYIDIPVLDIHGRQKQVKRTTTFFQFQKAKTATLLCTDVAARGLDIPEVDWIIQFDPPDDPREYVHRVGRTARGATGSgRALMFLTPQETGFLRYLQ 482
                 5789*************************************987322222221224443266788887754......44555555555554444.33333333320000002223456666666666664444444.67888899**********99..66766654...455665145788899999999766666677666246778899988777777777652122233334455555.6666666999999**************************************888877777766689*******************************988763677788888877777654 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.0   3.1e-10   1.4e-07      23     140 ..     126     251 ..     120     303 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 3.1e-10
   TIGR03817  23 pdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp.....ratalylaPtkalaadqlravkelee...rdvraatydGdtpaeerewirekaryvltnPdml 140
                 ++ ++a+++ G e+  + q +      aG++ + a+ t sGk+la+l+P+++ l++++     ++ a+ l+Pt+ la     ++kel     +     +  G   + e e +r+  ++v++ P  l
  MMETSP1061-20121228|8406_1 126 DETKEAINKMGHETMTKIQSKSIPSLLAGKDLIGAAQTGSGKTLAFLVPIVELLRKARfhtrnGTGAMILSPTRELAMQIYGVCKELLGeksTLTYGLIMGGANRKTEAERLRKGVNIVIATPGRL 251
                 567889999999999999************************************999544544889********************9873322223345667777788888999999999988765 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   3.2e-06    0.0014     210     347 ..      99     249 ..      75     277 .. 0.67
   2 ?   -1.1   0.0      0.26   1.2e+02      68      99 ..     279     327 ..     234     388 .. 0.54
   3 !   11.1   0.0   5.4e-05     0.025     488     536 ..     395     443 ..     376     484 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.2e-06
   TIGR00643 210 kkqqsaksvavse.ellekllasLPfelTeaQkravkeileD.lks..dvpmnRLlqG.......dVGsGKTvVavlallavi.......esGyqvalmaPTeiLAeQhyeklrellepl.gievalLtgslkkkkkkelleeiasGeielvvGTha 347
                 k+ ++a+s+ +++  + e+++asLP  lT + k+a++ + +  +++  ++ +  Ll G       + GsGKT+  ++ +++++       ++G  + ++ PT  LA Q y  ++ell +  +++ +l+ g    +++k+  e++++G +++v+ T  
  MMETSP1061-20121228|8406_1  99 KESTRAQSSGTKTgFFSEQTFASLP--LTDETKEAINKMGHEtMTKiqSKSIPSLLAGkdligaaQTGSGKTLAFLVPIVELLrkarfhtRNGTGAMILSPTRELAMQIYGVCKELLGEKsTLTYGLIMGG---ANRKTEAERLRKG-VNIVIATPG 249
                 4445555555555445566666777..6777777777666554432224556666666322223347*****988888877762222222589************************87414555666654...5677788899988.788888865 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.26
   TIGR00643  68 eltffn.saflkkkfkvgekvvvygkvksska................k 99 
                 e+ f +   ++ k+++++++ ++++  +++k+                +
  MMETSP1061-20121228|8406_1 279 EIGFEDdLRAIVKMLPKERQTMLFSATQTKKVedlarlsinpknaiyvE 327
                 4444444444444444444444444444444433333333332222220 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 5.4e-05
   TIGR00643 488 lhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedae 536
                 +hgr k+ ++   + +F++ ++  L++T v   G+d+P++  ++  d+ 
  MMETSP1061-20121228|8406_1 395 IHGRQKQVKRTTTFFQFQKAKTATLLCTDVAARGLDIPEVDWIIQFDPP 443
                 7**************************************9998877665 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.0     0.008       3.6      32      75 ..     162     210 ..     140     277 .. 0.83
   2 !   12.2   0.0   3.1e-05     0.014     321     393 ..     397     469 ..     372     475 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.008
   TIGR04095  32 atGtGktltaLalvskl.....aekikslvvvvvvPykhLveqWakeae 75 
                  tG+Gktl  L+ +++l      ++ +    +++ P ++L+ q +  ++
  MMETSP1061-20121228|8406_1 162 QTGSGKTLAFLVPIVELlrkarFHTRNGTGAMILSPTRELAMQIYGVCK 210
                 6***********9999977666555667778999999999999776665 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 3.1e-05
   TIGR04095 321 aeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRkspGkeraeiy 393
                  ++++ +R++   qf++ +  +l+       G+D+P++   +      +Pr+++ R GR  R + G  ra ++
  MMETSP1061-20121228|8406_1 397 GRQKQVKRTTTFFQFQKAKTATLLCTDVAARGLDIPEVDWIIQFDPPDDPREYVHRVGRTARGATGSGRALMF 469
                 5678889999999***********999999************************************9999765 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0    0.0003      0.14       5      83 ..     162     247 ..     157     259 .. 0.77
   2 ?    3.5   0.0      0.01       4.7     286     335 ..     386     435 ..     376     441 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0003
   TIGR00595   5 vtGSGKtEvylkviekvlak.......gksvlvLvPEiaLtaqllkrlkerfgsevavlhsk.lsasekkqawrkvklgeakvviGa 83 
                  tGSGKt  +l  i + l+k       g  +++L P   L++q+    ke +g++ ++     ++ +++k++ +++++g +++vi +
  MMETSP1061-20121228|8406_1 162 QTGSGKTLAFLVPIVELLRKarfhtrnGTGAMILSPTRELAMQIYGVCKELLGEKSTLTYGLiMGGANRKTEAERLRKG-VNIVIAT 247
                 59*********99988887622222225689**********************99876544338888888888887665.5677765 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.01
   TIGR00595 286 pkariarldsDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvt 335
                 + + i +ld    +++ + + +  qf++ k+  l+ t + a+Gld p+v 
  MMETSP1061-20121228|8406_1 386 NYIDIPVLDIHGRQKQVKRTTTFFQFQKAKTATLLCTDVAARGLDIPEVD 435
                 5555666666666667777788889**********************996 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   1.9      0.25   1.1e+02     144     232 ..      72     107 ..       2     176 .. 0.38
   2 ?    0.4   0.1      0.07        32      51     105 ..     302     364 ..     296     393 .. 0.65
   3 !   12.5   0.0   1.6e-05    0.0073     690     733 ..     395     438 ..     382     442 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.25
   TIGR00580 144 kaaeelereleefleaaleakklisaerlsleveelvleakalslsevelesalslkaseaieaaqeaeraelaeilalkeellralka 232
                 +  e+ e                                                     + ++++++++a++++i+  ++e  ra  +
  MMETSP1061-20121228|8406_1  72 DVGEKKE-----------------------------------------------------KKKKKKKKAKADEEDITDNNKESTRAQSS 107
                 1111111.....................................................11111111111222222222222222222 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.07
   TIGR00580  51 fdvadqrsleeleeiellpakeilleeetrarakkkaaaveeaektek........ealkegk 105
                 f+ ++ +++e+l+ +++ p+++i  e e +++++++++ ++   +  +        ++lk+ k
  MMETSP1061-20121228|8406_1 302 FSATQTKKVEDLARLSINPKNAIYVEVESNNKEATTENLEQGYVTCPSdkrflllfTFLKKNK 364
                 889999****************88877777766666555444433333345666654444444 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 1.6e-05
   TIGR00580 690 aHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTii 733
                 +Hg+ ++ +  +++ +F+k ++  L+cT +   G+dip++  ii
  MMETSP1061-20121228|8406_1 395 IHGRQKQVKRTTTFFQFQKAKTATLLCTDVAARGLDIPEVDWII 438
                 79**************************************9887 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.9   3.4       2.8   1.3e+03     591     628 ..      55      94 ..      34     119 .. 0.40
   2 ?    1.2   0.0     0.039        18      34      81 ..     157     216 ..     130     221 .. 0.68
   3 ?   11.6   0.0   2.8e-05     0.013     442     550 ..     364     469 ..     355     540 .. 0.82

  Alignments for each domain:
  == domain 1    score: -4.9 bits;  conditional E-value: 2.8
   TIGR00631 591 keilekkekekekeakkkkkk..aaeeaeklsekelkkli 628
                 ++  +kk+k ++++ + +  +  ++++++k+++k+ ++ i
  MMETSP1061-20121228|8406_1  55 SSKSKKKRKVEDDSDADDVGEkkEKKKKKKKKAKADEEDI 94 
                 3322222222222222211110011111111112222222 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.039
   TIGR00631  34 LlGv..tGsGktft....ianvia......kvqkPtlvlahnktLaaqLyeelkelfPen 81 
                 L+G+  tGsGkt++    i ++++      +    +++l++ + La q+y   kel+ e 
  MMETSP1061-20121228|8406_1 157 LIGAaqTGSGKTLAflvpIVELLRkarfhtRNGTGAMILSPTRELAMQIYGVCKELLGEK 216
                 4554338999997621112223321111113345689**************999998765 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 2.8e-05
   TIGR00631 442 knervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnveG..kvily 550
                 kn++++v           ++ l+ ++i v  +h   + ++r++   +++k++   l+  ++   GlD+Pev  +  +D        + r  +  +Gr ar ++G  +++++
  MMETSP1061-20121228|8406_1 364 KNKKIMVFLSSCNSVKFHAELLNYIDIPVLDIHGRQKQVKRTTTFFQFQKAKTATLLCTDVAARGLDIPEVDWIIQFDPP-----DDPREYVHRVGRTARGATGsgRALMF 469
                 5555555544444444456677778999*********************************************9999874.....45677899999999988651156665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.56u 0.16s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1923.27
//
Query:       MMETSP1061-20121228|8416_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 971.44
//
Query:       MMETSP1061-20121228|8415_1  [L=940]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-10   37.5   0.0    0.00015   19.6   0.0    4.5  5  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0     0.066   2.7e+02      17      27 ..     399     409 ..     393     410 .. 0.84
   2 ?   -1.6   0.0       0.2   8.2e+02      17      29 ..     441     453 ..     425     456 .. 0.77
   3 ?   -3.6   0.0      0.84   3.4e+03       9      33 ..     713     737 ..     708     737 .. 0.67
   4 !   11.1   0.0   1.8e-05     0.072       2      29 ..     741     768 ..     740     770 .. 0.94
   5 !   19.6   0.0   3.7e-08   0.00015       2      34 ..     779     811 ..     778     812 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.066
   TIGR00756  17 eeAlelfdeMk 27 
                 + +l++f+eMk
  MMETSP1061-20121228|8415_1 399 DACLRIFEEMK 409
                 7899******7 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.2
   TIGR00756  17 eeAlelfdeMker 29 
                  eA+ + +eM+++
  MMETSP1061-20121228|8415_1 441 GEAIGIVQEMIDN 453
                 699999****875 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 0.84
   TIGR00756   9 glckagrveeAlelfdeMkergivP 33 
                 +++k ++ e A++ ++ ++++g++P
  MMETSP1061-20121228|8415_1 713 CHAKCNDAENAKRDLNMLIDSGLKP 737
                 6777777777776666677777766 PP

  == domain 4    score: 11.1 bits;  conditional E-value: 1.8e-05
   TIGR00756   2 tyntlisglckagrveeAlelfdeMker 29 
                  y+++++ ++  g++ e++elf++Mke+
  MMETSP1061-20121228|8415_1 741 LYSAVLHTMAVTGKYPEMEELFQSMKEA 768
                 59************************97 PP

  == domain 5    score: 19.6 bits;  conditional E-value: 3.7e-08
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 +y +++ g  +ag+++eA+ +f++Mk  g++P+
  MMETSP1061-20121228|8415_1 779 SYDAILLGRIRAGSWDEAIAVFEQMKVGGVKPS 811
                 7888888999**********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (940 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.17s 00:00:00.56 Elapsed: 00:00:00.76
# Mc/sec: 1632.50
//
Query:       MMETSP1061-20121228|8419_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1646.99
//
Query:       MMETSP1061-20121228|8413_1  [L=675]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (675 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       696  (0.169673); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.12s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 2620.37
//
Query:       MMETSP1061-20121228|8417_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1682.86
//
Query:       MMETSP1061-20121228|8414_1  [L=1033]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1033 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 3325.48
//
Query:       MMETSP1061-20121228|8420_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-06   22.9   4.0    8.8e-06   22.9   2.7    1.7  2  TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein


Domain annotation for each model (and alignments):
>> TIGR00776  RhaT: RhaT L-rhamnose-proton symporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   2.7   2.1e-09   8.8e-06       9     135 ..      19     145 ..      12     173 .. 0.72
   2 ?   -1.4   0.1     0.051   2.1e+02      29      50 ..     273     294 ..     253     348 .. 0.61

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.1e-09
   TIGR00776   9 palswgsivliakkvkgkpasqilGttvgalilsiviailllpeftalsiflvgllsGalwalgqinqlksmrllGvSktmpistGlqLvvgtLlgvivfgewsvsistllG.llallliiiGvalts 135
                 +a  +gs  +++k   + + + ++     ++++ +  ++++  e +  s  + gllsG+lw  g +  + ++r+ G+  +++i + +  + +  +g +vf+e   s + + G +l l + +iG++  s
  MMETSP1061-20121228|8420_1  19 GASCYGSYGVPVKSTSSVNIHPLVIQSYKTVVVFVSSLVVVFNEEW-PSWTSYGLLSGLLWVCGGTLGIFAIRNSGMAAAVGIWSSIMVIINFVWGILVFREPIHSLARTCGaFLFLGIGLIGMTKFS 145
                 5555666666666655555555555555555555555555555555.78899**************************************************99999999886777777788875332 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.051
   TIGR00776  29 sqilGttvgalilsiviailll 50 
                 s  +  t gali+ + ++++l 
  MMETSP1061-20121228|8420_1 273 SYYISFTSGALIVNVSLWVILY 294
                 4455566777777766665542 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1822.46
//
Query:       MMETSP1061-20121228|8421_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35    8.4   9.6       0.51    7.9   6.6    1.1  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.6   0.00012      0.51      90     210 ..     169     294 ..     166     312 .. 0.65

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00012
   TIGR03354  90 delrlGdyeirvsl....aagaapafdelaptpetlvtaalqqvsseaseedlddslteagegaaprpapqaasldPlkaldqepasaadlddgalsaelaeevaealpadlasidae.stlepel 210
                 de++lGd  +  ++    ++ + +   e+ ++  ++ t++ + +s++++e+d++ +  e+++   p+ a+ + ++dP k+ d+e   +++ +++ +  +++e v +++++d ++   e ++ + ++
  MMETSP1061-20121228|8421_1 169 DEIALGDHHVGFEVtlttSDEESKSCSENDQNDPDANTNNNDSGSRNDNEQDTKGQTEEDESANQPEGADTETDKDPSKSKDEEATEPNESESPSATFDADEAVPQDEDEDKDKDETEtPHRDRPP 294
                 89999*9999888866653333333444444444455577778888999999999999999999999999999***************99999884444444444433333333332223333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.27
# Mc/sec: 2429.58
//
Query:       MMETSP1061-20121228|8424_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1206.76
//
Query:       MMETSP1061-20121228|8422_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 2097.68
//
Query:       MMETSP1061-20121228|8425_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 951.71
//
Query:       MMETSP1061-20121228|8428_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-10   37.9   0.0    2.7e-10   37.7   0.0    1.1  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    3.5e-05   21.3   0.0    4.1e-05   21.1   0.0    1.1  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
  ------ inclusion threshold ------
      0.015   12.5   0.0      0.018   12.3   0.0    1.0  1  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
      0.024   11.5   0.0      0.029   11.3   0.0    1.0  1  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   0.0   2.6e-13   2.7e-10      98     132 ..      22      56 .]      16      56 .] 0.91

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 2.6e-13
   TIGR01249  98 lvfGGsWGstlalayaqkhPekvtklvlrgifllr 132
                  v+GGsWG+tl layaq++P  ++ lvlrgi  lr
  MMETSP1061-20121228|8428_1  22 CVLGGSWGATLGLAYAQRYPRSMKSLVLRGICALR 56 
                 489****************************8776 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     4e-08   4.1e-05     100     130 ..      23      53 ..      21      55 .. 0.93

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 4e-08
   TIGR01250 100 llgqSwGglLaqeYalkyqqhlkgliissml 130
                 +lg SwG++L ++Ya +y+  +k+l++ + +
  MMETSP1061-20121228|8428_1  23 VLGGSWGATLGLAYAQRYPRSMKSLVLRGIC 53 
                 79************************98876 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.7e-05     0.018      95     124 ..      23      52 ..      20      55 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.7e-05
   TIGR02240  95 vigvswggalaqqfahdyperckklvlaat 124
                 v+g swg +l   +a+ yp   k lvl   
  MMETSP1061-20121228|8428_1  23 VLGGSWGATLGLAYAQRYPRSMKSLVLRGI 52 
                 7899**********************9765 PP

>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   2.8e-05     0.029     129     158 ..      20      49 ..      17      54 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.8e-05
   TIGR01392 129 laavvGgSlGGmqalewalsypervkkivv 158
                 + +v+GgS G    l +a +yp ++k++v 
  MMETSP1061-20121228|8428_1  20 WDCVLGGSWGATLGLAYAQRYPRSMKSLVL 49 
                 88***********************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 335.97
//
Query:       MMETSP1061-20121228|8429_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 439.96
//
Query:       MMETSP1061-20121228|8431_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 777.79
//
Query:       MMETSP1061-20121228|8432_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 568.92
//
Query:       MMETSP1061-20121228|8436_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-10   37.7   0.0    4.8e-10   36.9   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    4.5e-06   24.2   0.0    6.8e-06   23.6   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    5.4e-05   20.9   0.1    7.7e-05   20.4   0.1    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    9.2e-05   19.8   0.0     0.0001   19.6   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00012   18.5   0.0    0.00017   18.0   0.0    1.2  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
     0.0073   14.4   0.0      0.014   13.5   0.0    1.4  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0083   13.5   0.2      0.013   12.9   0.1    1.3  1  TIGR02081 metW: methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.9   0.0   8.2e-13   4.8e-10      33     149 ..      96     222 ..      91     235 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.9 bits;  conditional E-value: 8.2e-13
   TIGR01934  33 kkieeekeekvlDvatGtGdlaielakkae..akvtgvDlseemLevakkkakek.eeanvefieadaeeLp.fednsfda......vtiafGlRNvtdiekaLkelaRVlkpggrlvilefskpkn 149
                 k+ie+++++ vl + +G  +l  e+  + +    ++ vD+s++++e+ ++++++  ++ n++f++ da+eL+ f+d  +da      +   f    +++ ++  + + RVl+pgg +v   fs+p+ 
  MMETSP1061-20121228|8436_1  96 KAIESKRQQSVLMLGCGNSKLGEEMVTEGGfeGPIVQVDVSSNVVEIMRQRCSDLvAKGNMNFVQDDATELSaFRDGMVDAcldkglLDAIFCAEDFHQLHQIQNTISRVLRPGGWFVFFSFSRPEF 222
                 56788899*******************9999999********************9999*************99*****99733333356789999****************************9986 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.2e-08   6.8e-06      39     158 ..      96     223 ..      88     231 .. 0.81

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.2e-08
   TIGR02752  39 krmnvqkgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkda.klenvelvhgnamelp.yednsfdyvtig.......fglrnvpdylqvlkemarvvkpggkvvcletsqptll 158
                 k ++ ++ +++l + cg +     +  + g eg ++ +d s n++++ +++  d     n+++v  +a el  + d   d   +        f   +  +  q+ + + rv++pgg  v +  s+p++l
  MMETSP1061-20121228|8436_1  96 KAIESKRQQSVLMLGCGNSKLGEEMVTEGGFEGPIVQVDVSSNVVEIMRQRCSDLvAKGNMNFVQDDATELSaFRDGMVDAC-LDkglldaiFCAEDFHQLHQIQNTISRVLRPGGWFVFFSFSRPEFL 223
                 667888999*******************************************99725679**********964777777753.3300111115555555666788899*****************9976 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   1.3e-07   7.7e-05      32     140 ..     100     222 ..      81     267 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.3e-07
   TIGR02072  32 kfepakvLdiGcGtGiltrallkrfpqae.lialDiseemleqakkkls......nvqficgdieklplekks..........fDlivSnlalQWlddlsevlaelarvlkpgGllafstfgketl 140
                 +  +++vL +GcG   l +++  +   +  ++ +D+s +  e+++++ s      n++f++ d+ +l+ + +           +D i+++  ++ l++ +   + + rvl+pgG ++f +f+  ++
  MMETSP1061-20121228|8436_1 100 SKRQQSVLMLGCGNSKLGEEMVTEGGFEGpIVQVDVSSNVVEIMRQRCSdlvakgNMNFVQDDATELSAFRDGmvdacldkglLDAIFCAEDFHQLHQIQ---NTISRVLRPGGWFVFFSFSRPEF 222
                 344689*********9999988888777669***************9999*****************988777788999988899999998877666666...777899*********99988765 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.8e-07    0.0001      55     123 ..     103     174 ..      65     266 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.8e-07
   TIGR02021  55 GkkvlDAGCGtGllsielAkrGai...vkavDiseklvelarkraekedeaenveFevndleslegkfDavv 123
                  + vl  GCG   l +e+  +G     ++ vD+s ++ve+ r+r ++   ++n++F+ +d  +l+   D +v
  MMETSP1061-20121228|8436_1 103 QQSVLMLGCGNSKLGEEMVTEGGFegpIVQVDVSSNVVEIMRQRCSDLVAKGNMNFVQDDATELSAFRDGMV 174
                 4678999***********999863334899***************************999887775555544 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.9e-07   0.00017     275     326 ..      95     147 ..      52     162 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.9e-07
   TIGR04074 275 vaalresgarsvlDlGcGegkLlkaLlaekqfe.kivgvdvsareLekakrrl 326
                  +a+++   +svl lGcG++kL +++++e  fe  iv vdvs + +e+ ++r 
  MMETSP1061-20121228|8436_1  95 SKAIESKRQQSVLMLGCGNSKLGEEMVTEGGFEgPIVQVDVSSNVVEIMRQRC 147
                 4678888999**********************945*************99996 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.4e-05     0.014      17     119 ..     100     213 ..      96     216 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.4e-05
   TIGR02469  17 lkkgdvllDiGaGtGsvtieaarlvpk.grvyaierneealelieeNlrrf.gvsnieivegdap........kaeeds.leeadavfvgGsgkklkeileaverrlrpggriv 119
                  k+++ +l  G+G   ++ e+    +  g ++ ++ + +++e +++ + ++ +  n++ v++da          +++ +     da+f     ++l++i + ++r+lrpgg  v
  MMETSP1061-20121228|8436_1 100 SKRQQSVLMLGCGNSKLGEEMVTEGGFeGPIVQVDVSSNVVEIMRQRCSDLvAKGNMNFVQDDATelsafrdgMVDACLdKGLLDAIFCAEDFHQLHQIQNTISRVLRPGGWFV 213
                 5667788999**********99999988***********************8889********999998887633333335679**************************9876 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.1   2.2e-05     0.013      13      80 ..     102     178 ..      93     209 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.2e-05
   TIGR02081  13 agsrvLDlGcGdGeLLallrdekqveg.........aGleideenvlacvarGveviqqdldegLeafedksfDvvv 80 
                  + +vL lGcG+ +L + +  e   eg         + +ei  +   + va+G     qd  ++L+af+d   D  +
  MMETSP1061-20121228|8436_1 102 RQQSVLMLGCGNSKLGEEMVTEGGFEGpivqvdvssNVVEIMRQRCSDLVAKGNMNFVQDDATELSAFRDGMVDACL 178
                 5678******************999999988888888899999999999999976666666789****999988764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1204.40
//
Query:       MMETSP1061-20121228|8434_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-13   46.8   0.0    8.1e-13   46.1   0.0    1.2  1  TIGR00505 ribA: GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> TIGR00505  ribA: GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0     2e-16   8.1e-13      43     168 ..     275     411 ..     264     432 .. 0.79

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 2e-16
   TIGR00505  43 vlvrihseCltGdalfslrCdCGeqleralkl....iakegkGviiylrqeGrgiGlinklkayalq..dkGadt....veanlelgfkaderdfslaaeiledlgvkkvr.lltnnPekieelkkaglkvvervpl 168
                    r+h eC   d++ s  C C   l +a +      +k g G++iy+r+eGr++G + k   y+ +  ++G d      e  +++   +d+r  +l  + l+ lgv k+  ++     k +++   g+kvv+rv +
  MMETSP1061-20121228|8434_1 275 LTCRVHDECNGSDVFGSDICTCRPYLTHAIEEciktAQKGGCGIVIYFRKEGRSLGEVTKYLVYNTRkrQEGGDSaeryFECTEQVAGVQDTRFQALMPDPLHFLGVTKIHnFISMSDMKYNAIVSTGIKVVNRVEI 411
                 457*******************98887776541000455555**********************97522567787122245778888999*******************9736677889***************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.35
# Mc/sec: 1813.91
//
Query:       MMETSP1061-20121228|8439_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 373.01
//
Query:       MMETSP1061-20121228|8438_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1067.91
//
Query:       MMETSP1061-20121228|8440_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 1264.64
//
Query:       MMETSP1061-20121228|8441_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.053    9.7   4.0      0.068    9.3   2.7    1.0  1  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.7   1.7e-05     0.068     437     538 ..      66     168 ..      58     176 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 1.7e-05
   TIGR00811 437 eraagekpdhsvhagreftlgtnvlsdrknweealanlsvketf.svrrerilknikelkelleeassdeekaafeaalalev.kaldklneeeeeeadlkkev 538
                 e  a ++   sv + r+f l     +dr+   e+ a  s    +   + + il+ ik+ ++  ++  s+e +++f+ +   e  + l  +++e++e+a+ + e+
  MMETSP1061-20121228|8441_1  66 ETRAMMNSHRSVVSERDFKLAEIKKDDRRAKMETAARYSSYRGVgISKNDTILTTIKKEQRD-KKRESAESNSTFQGGTISEAdRKLTEIKKEQREAAKETAES 168
                 5566788899***********999999999999999999666551568899*****976554.55678889999999887775378999999999988777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       262  (0.0638713); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1175.33
//
Query:       MMETSP1061-20121228|8437_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1194.19
//
Query:       MMETSP1061-20121228|8444_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 590.48
//
Query:       MMETSP1061-20121228|8445_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.16s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 283.78
//
Query:       MMETSP1061-20121228|8449_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 809.15
//
Query:       MMETSP1061-20121228|8450_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 618.26
//
Query:       MMETSP1061-20121228|8451_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 412.47
//
Query:       MMETSP1061-20121228|8452_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 482.05
//
Query:       MMETSP1061-20121228|8448_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 612.28
//
Query:       MMETSP1061-20121228|8456_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 1192.30
//
Query:       MMETSP1061-20121228|8454_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 2856.24
//
Query:       MMETSP1061-20121228|8461_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 451.54
//
Query:       MMETSP1061-20121228|8460_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-18   64.3   0.0    2.9e-17   60.5   0.0    1.9  2  TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit
  ------ inclusion threshold ------
      0.039   10.5   0.0      0.054   10.0   0.0    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB


Domain annotation for each model (and alignments):
>> TIGR01016  sucCoAbeta: succinate-CoA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   1.4e-20   2.9e-17      36     130 ..       8     108 ..       1     112 [. 0.92
   2 !    1.9   0.0    0.0092        19     129     170 ..     142     183 ..     135     191 .. 0.85

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 1.4e-20
   TIGR01016  36 eelgakkvvvkaqvhaGGR.......GkaGGvkvakskeellkaaeellgkelktfqtakegekvekilieekveiekeyYlsiviDRkakkvviilsaeGG 130
                 e +g +++v+kaqv+ G R       G  GGv+v++++e ++ +a+ +lg++l t+q+ ++g    +++++ek+ +++e+Y+si +DR+++ +++i s  GG
  MMETSP1061-20121228|8460_1   8 EGSGFGEAVLKAQVLSGSRysgtfdnGFCGGVHVVSDPETARTVADRMLGHKLITQQA-PDGLFCRQVMVQEKLRLSRELYVSIWMDRSSQGPLLIGSPLGG 108
                 5677899**********997777777889*************************9988.***************************************9998 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.0092
   TIGR01016 129 GGvdieevaeksPekilkvaidpkkgllpyqlRelakklele 170
                 G   + eva+++P+ +   +id+++gl   +  ++a +l+l+
  MMETSP1061-20121228|8460_1 142 GSRSLVEVARSHPHLVFVEEIDVQDGLEADRCERMAENLGLD 183
                 5556779******************99999998898888886 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   2.6e-05     0.054      87     159 ..      94     164 ..      85     175 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.6e-05
   TIGR01241  87 kiPkGvllvGpPGtGktLlakavaGeagvp.ffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDa 159
                 ++ +G ll+G+P  G   ++ +v+G a+ +   s+sGs         G+   r l e a+++ P ++f++eiD 
  MMETSP1061-20121228|8460_1  94 RSSQGPLLIGSPLGGSVGVSGSVSGSASLSgSASLSGSASTSTTR--GSRGSRSLVEVARSH-PHLVFVEEIDV 164
                 677999*********************987257899999887765..5566689****9975.*********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 938.59
//
Query:       MMETSP1061-20121228|8462_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1783.98
//
Query:       MMETSP1061-20121228|8464_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 697.66
//
Query:       MMETSP1061-20121228|8463_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1998.69
//
Query:       MMETSP1061-20121228|8470_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-16   57.3   0.0    3.2e-16   57.1   0.0    1.1  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
    8.7e-16   55.4   0.0      1e-15   55.2   0.0    1.0  1  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component


Domain annotation for each model (and alignments):
>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.1   0.0   1.6e-19   3.2e-16     276     411 .]       2     152 .]       1     152 [] 0.78

  Alignments for each domain:
  == domain 1    score: 57.1 bits;  conditional E-value: 1.6e-19
   TIGR03224 276 gtgsapmramterrrrrr...akgeggklllffgartkeelpy...fgpl.......qklpkdfidinfafsrtpeep...kryvqdaireraadvaallkddntyiyvcglkgmeegvlealrevaeaagldwetleprlraegrlhlety 411
                 gtg ap+r++  r+  +    ++ + g+  l++g  t   l y   f  +        +     + i++a+sr++ +    + yvqd ++++a++++  l++ ++ iy cglkgm  g+leal+eva++ gldw     r +a+ + h+e y
  MMETSP1061-20121228|8470_1   2 GTGIAPFRSFLHRMFIEHtpaNHMFQGRAWLILGVPTTGSLLYkpeFDAMlrrqspdANASAGSLRIDYAISREMTNSsggRFYVQDLLKQQASELFGRLEN-GAVIYFCGLKGMMPGILEALEEVATERGLDWGPTLKRYQANHQWHVEVY 152
                 899999999988876544111455899999999999998886633354431100000334445799*******9876423378**************99975.789********************************************98 PP

>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   4.9e-19     1e-15     459     572 ..       2     131 ..       1     143 [. 0.80

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 4.9e-19
   TIGR01931 459 GtGvaPfraflqer......eeegaeGknWlffGnphfaeDfLYqveWqkylkkgv........ltkldlafsrDqke....kiYvqdrlreqgkelfeWlqeGahiYvCGdakkmakDvekaLldviakeg 572
                 GtG+aPfr+fl++       +++  +G++Wl+ G p  +   LY+ e+  +l++            ++d a sr+  +    + Yvqd l++q+ elf  l++Ga iY CG  k m   + +aL +v ++ g
  MMETSP1061-20121228|8470_1   2 GTGIAPFRSFLHRMfiehtpANHMFQGRAWLILGVPT-TGSLLYKPEFDAMLRRQSpdanasagSLRIDYAISREMTNssggRFYVQDLLKQQASELFGRLENGAVIYFCG-LKGMMPGILEALEEVATERG 131
                 9********99764322222566679*********97.678***********9865222222223489******9876444489***************************.77888889999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 955.35
//
Query:       MMETSP1061-20121228|8468_1  [L=1246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-93  310.8   0.0    5.7e-52  174.4   0.0    2.0  2  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
    4.7e-82  274.4   0.0    5.1e-52  175.1   0.0    2.2  2  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    5.6e-05   20.2   0.2    0.00018   18.5   0.0    1.9  3  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
     0.0013   14.3   0.0     0.0021   13.6   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.0   7.9e-43   8.1e-40      54     249 ..     257     479 ..     233     498 .. 0.85
   2 !  174.4   0.0   5.6e-55   5.7e-52     260     647 ..     689    1103 ..     674    1111 .. 0.85

  Alignments for each domain:
  == domain 1    score: 134.2 bits;  conditional E-value: 7.9e-43
   TIGR01967  54 ekavPeirypdnlPvsakrediakaiaenqvviiaGetGsGkttqlPkiclelGrGsrGlightqPrrlaarsvaervaee..l..........gtplGevvGykvrfedqvseetlvklltdGillaelqqdrflerydtiiideaherslnidfllGylkellkrrPdlkiiitsatidverfskhfnna................P.iievsGrtyPvevry 249
                 ++    +r   +lP  ++  +i  ++ +n v +i GetG Gk tq P+  l+        i++tqPrr++a s+aerva+e  l          g ++G++vGy+vr+e ++s++t + +lt G+ll  lq+  +l++y  iiide her    +fll  l++ll+ rPdl++++ sat+ +e + ++f                   P ++++ Grt+Pv+  +
  MMETSP1061-20121228|8468_1 257 REYSQVLRNRSKLPAYGREAEIVATVHANPVTVIQGETGCGKSTQCPQFLLDAN--PTANIAVTQPRRISAISIAERVAQEqcLvsptdnntagGGGVGSLVGYQVRLETASSKDTQLLFLTPGVLLRKLQSSPMLSEYTHIIIDEVHERDKYTEFLLIRLRDLLPIRPDLRLVLMSATLQTEVLMQYFSPDndrlsgrnkdfyrdhpPvMLSIEGRTFPVQEFF 479
                 333456788899************************************998865..5678*******************985533333332222346899*****************************************************************************************766678999*********8525799*******8665 PP

  == domain 2    score: 174.4 bits;  conditional E-value: 5.6e-55
   TIGR01967  260 idldqleallaavdelveeek..GdiliflpGereirdaaealrk....rklrhveilPlyarlsaeeqqrvfq..phsgrrivlatnvaetsltvPgiryvidtGtarisrysyrtkvqrlPiepisqasanqrkGrcGrvaeGicirlyseedfnsrPeftdPeilrtnlasvilqmlalrl..G...diaafP.f....ieaPdkrairdGlrlleeldalkedeaeikltpiGrqlaqlPvdPrlarmlleaerlgclqevliiasalsiqdprerPl.ekkqaadqaharfkd.vesdflalvklWryleeqrkalsanalrkklkkeylnylrvreWqdlvrqlkqvvkelglk.......vneepadydaihk.allsGllsqiGakde.kkeysGarnrkflifPgsel 647 
                  +++ + e ll+ +  +v++++  G il+flpG  ei +    l++    ++  +  +lPl++ + +++q+rv++  p   r+ivl+tn+aetslt+  + +vid+G a+   y    k   l    isq+sa qrkGr Gr ++G+c  l+s    +s   f + e+lrt l  + l  ++l+l  G   d +  P f    i +P+ ++i++ l+lle+l+a+  ++   +lt +G  l+ l ++Pr+++m++ +  lgc + +  +a a++ + p   P  + + +a++     +d  esd +++++   + ++ +k++ ++a+r +++++yl+   ++   dl + l++    lg+         n   ++ +a+ + a+ +Gl  ++ +++  + ++s   nrk  i+ +s  
  MMETSP1061-20121228|8468_1  689 DEQINTELLLEVLHYIVKKSQgeGAILVFLPGWHEISEVSMLLENtvpfHNRSKFLVLPLHSGIPSQDQRRVLRrpPPGSRKIVLSTNIAETSLTIDDVAFVIDSGRAKEKDYDPHLKTSTLQPIWISQSSAKQRKGRAGRTKAGVCFHLFSSTRHQSMRPFVESELLRTPLEEMCLMTKKLGLapGgpeDDDGIPaFlskaITPPHAKSISNALELLENLGAMLPET--NDLTSLGECLSVLSLEPRVGKMVIWSYLLGCTKVASQMAVAMAYKSPFVLPPpHMRREAERSKLILSDhSESDQVTVLNAVVKRDQLKKKKGESAYRDWCQRNYLSASSLQMIGDLRKNLTRELSTLGFAdpmargyHNRRDTKQHALWQaAIAAGLYPNVATRKRgDVNFSTMTNRKAKIHVSSVN 1103
                  3455567788888889888776689**************99998822224556678****************98556788*****************************************97779*******************************9999**********************955334433334432334499********************9998..79*********************************************987651667777777777776268*********9999999****************************************9863322222345557777777625789******99988799*****9999999998864 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.1   0.0   1.9e-31   1.9e-28      10     166 ..     278     443 ..     269     485 .. 0.84
   2 !  175.1   0.0     5e-55   5.1e-52     184     443 ..     682     959 ..     679    1056 .. 0.83

  Alignments for each domain:
  == domain 1    score: 97.1 bits;  conditional E-value: 1.9e-31
   TIGR01970  10 lrdalaakpqvvLeappGaGkstalPLalLdapwligrkiilLePrrlaaravaerlasel............geevGetvGyrvrlenkvsaktrlevvteGiltrmlqdDPeLegvdllifDefhersldaDlaLalaldvqsalreDLkilimsatLdgerlsell 166
                 + ++++a+p +v++  +G Gkst+ P  lLda      +i +  Prr++a ++aer+a+e             g  vG  vGy+vrle+  s++t+l   t G+l r+lq+ P+L+    +i+De+her   ++  L   +d    +r DL++++msatL+ e l + +
  MMETSP1061-20121228|8468_1 278 IVATVHANPVTVIQGETGCGKSTQCPQFLLDAN--PTANIAVTQPRRISAISIAERVAQEQclvsptdnntagGGGVGSLVGYQVRLETASSKDTQLLFLTPGVLLRKLQSSPMLSEYTHIIIDEVHERDKYTEFLLIRLRDL-LPIRPDLRLVLMSATLQTEVLMQYF 443
                 6678999************************99..7889*******************86433444433333345699*******************************************************9988776665.579**************99987654 PP

  == domain 2    score: 175.1 bits;  conditional E-value: 5e-55
   TIGR01970 184 rylplredealedrvaraveealaees...gsvLvfLPGqaeirrveeaLaerl...dasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarvarfdpksGltrLetkrisqasadqraGraGrlepGvclrLwseeqaerlaaaaepeilqadLaglalelarWGak...psd.......lr.fldaPPaaalaaakeLLqrlgaldaeg.kltahGkalaeLgvePrlaalllsakseeeaalaaelaalLe 443
                  y+++ +de++++++   v++ + ++s   g +LvfLPG  ei  v+  L++++   ++s+  ++PL+  ++ ++q+r+++ ++ G rk+vL+tniaetslti+ v  viDsg a++  +dp+   + L+   isq+sa+qr+GraGr+++Gvc++L+s ++++++  + e+e+l++ L ++ l   + G     p+d       l+  ++ P a ++ +a eLL+ lga+ +e+ +lt  G+ l  L++ePr+ ++++ +   +  ++a ++a+ + 
  MMETSP1061-20121228|8468_1 682 HYQTMYDDEQINTELLLEVLHYIVKKSqgeGAILVFLPGWHEISEVSMLLENTVpfhNRSKFLVLPLHSGIPSQDQRRVLRRPPPGSRKIVLSTNIAETSLTIDDVAFVIDSGRAKEKDYDPHLKTSTLQPIWISQSSAKQRKGRAGRTKAGVCFHLFSSTRHQSMRPFVESELLRTPLEEMCLMTKKLGLApggPEDddgipafLSkAITPPHAKSISNALELLENLGAMLPETnDLTSLGECLSVLSLEPRVGKMVIWSYLLGCTKVASQMAVAMA 959
                 588999999*****999999998776522256*******************99844456***************************************************************************************************************************99888888763333332343222331234455667899**********9888769*********************99966666666666655443 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.66   6.7e+02       2      23 ..     288     309 ..     287     334 .. 0.68
   2 !   18.5   0.0   1.8e-07   0.00018     125     173 ..     393     443 ..     369     459 .. 0.91
   3 ?   -3.5   0.0      0.92   9.4e+02     273     295 ..     763     785 ..     689     791 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.66
   TIGR01587   2 lvieAPtGyGKteaallwalkl 23 
                 +vi+  tG GK++    ++l++
  MMETSP1061-20121228|8468_1 288 TVIQGETGCGKSTQCPQFLLDA 309
                 799999******9987777663 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1.8e-07
   TIGR01587 125 nSvliiDEvhayeeytkalllallevlk.dvdvkillmsAtlp.kllkeyl 173
                 +  +iiDEvh  ++yt+ ll+ l ++l  + d +++lmsAtl  + l++y+
  MMETSP1061-20121228|8468_1 393 YTHIIIDEVHERDKYTEFLLIRLRDLLPiRPDLRLVLMSATLQtEVLMQYF 443
                 568**************999999999999*************999999997 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 0.92
   TIGR01587 273 elkknekfvivaTQviEvslDis 295
                 +       ++  T ++E sl i+
  MMETSP1061-20121228|8468_1 763 RPPPGSRKIVLSTNIAETSLTID 785
                 44445566788888888888887 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   2.1e-06    0.0021     113     194 ..     368     443 ..     359     458 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 2.1e-06
   TIGR04121 113 kppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevl 194
                 k  ++L  Tp    +ll + +++ ++++ + +++DE+He    k  ++l + L  L  ++p+lr v +sAT++  e ++++ 
  MMETSP1061-20121228|8468_1 368 KDTQLLFLTPG---VLLRKLQSSPMLSEYTHIIIDEVHE--RDKYTEFLLIRLRDLLPIRPDLRLVLMSATLQT-EVLMQYF 443
                 56677888885...7899999*****************9..6788888888888888899***********975.4455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.70u 0.16s 00:00:00.86 Elapsed: 00:00:00.73
# Mc/sec: 2252.86
//
Query:       MMETSP1061-20121228|8472_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 646.75
//
Query:       MMETSP1061-20121228|8474_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1267.10
//
Query:       MMETSP1061-20121228|8473_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-11   42.2   0.1    4.3e-11   40.4   0.1    1.7  1  TIGR02476 BluB: cob(II)yrinic acid a,c-diamide reductase
    1.8e-10   38.8   0.3    8.6e-10   36.5   0.2    1.9  1  TIGR03553 F420_FbiB_CTERM: F420 biosynthesis protein FbiB, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR02476  BluB: cob(II)yrinic acid a,c-diamide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.1   2.1e-14   4.3e-11       8     150 ..     149     287 ..     144     290 .. 0.75

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 2.1e-14
   TIGR02476   8 avyrllkeRRDvRrfrsdPvdeevlerlleaahlAPsvGlsqPWrivrveeeakreavlalfeeaneaaaklyegerakqykrLklegireapvqlavflddaraekhglGrktmpem..leysvalaiqnlwlaaRaeGlGvGw 150
                  +++ll  RR v  f + Pvd++vler ++ a +AP    s+PWr+ ++  e+ r+ +  +   a+e  a   e+ + ++y+     +   + v+ +  +  + a+ ++l  +t++e   + +sv ++iqnl l   +eG+G  w
  MMETSP1061-20121228|8473_1 149 SFQSLLVGRRTVEVFDQTPVDDAVLERAVQCAIAAPNRSGSEPWRFRKLGPETIRKLAALNSALAEE-DA---ENGKFTRYTDWATVAPGWCVVTRT--ISGSDASTNVLDTRTQSEQqqDFKSVCCSIQNLMLSMWSEGIGTKW 287
                 67889999*****************************************999988755433333322.22...334556677655444344444433..344566688898888876511568*******************998 PP

>> TIGR03553  F420_FbiB_CTERM: F420 biosynthesis protein FbiB, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.2   4.2e-13   8.6e-10       4     150 ..     155     294 ..     152     338 .. 0.71

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 4.2e-13
   TIGR03553   4 llrrsvrefsadpvdpdavraavaealtapaphhtrpvrfvlvedaeerarlldamkdkwradlradglsedaverrvarGdilldapelvipvlvldG..ahsypderraaaeetmftvavGaavqallvalaveglGscwvgstifa 150
                 + rr+v  f ++pvd++++++av  a++ap    + p+rf  +  ++ r   l+a++ + +++ + +g    +  r     d    ap   +    + G  a +   ++r+++e++    +v  ++q+l++++ +eg+G+ w +  + +
  MMETSP1061-20121228|8473_1 155 VGRRTVEVFDQTPVDDAVLERAVQCAIAAPNRSGSEPWRFRKLGPETIR--KLAALNSALAEEDAENG----KFTRY---TDWATVAPGWCVVTRTISGsdASTNVLDTRTQSEQQQDFKSVCCSIQNLMLSMWSEGIGTKWTTGPVQT 294
                 569****************************************777666..58888877665544444....33333...34444566554444444440144445567888888888889*********************8766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1418.88
//
Query:       MMETSP1061-20121228|8469_1  [L=971]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (971 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.36
# Mc/sec: 3560.04
//
Query:       MMETSP1061-20121228|8475_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.33
# Mc/sec: 431.96
//
Query:       MMETSP1061-20121228|8471_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 1460.30
//
Query:       MMETSP1061-20121228|8478_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 389.02
//
Query:       MMETSP1061-20121228|8476_1  [L=794]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-08   32.5   0.0    1.1e-06   26.3   0.0    2.4  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.9e-08   30.6   0.0    6.5e-06   23.6   0.0    2.4  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.2e-07   29.1   0.0    4.5e-06   23.9   0.0    2.3  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.4e-06   25.4   1.4      0.001   16.0   0.1    3.0  3  TIGR02685 pter_reduc_Leis: pteridine reductase
    1.5e-06   26.0   0.0      0.016   12.7   0.0    2.4  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.1e-05   21.9   0.0     0.0081   13.4   0.0    2.4  2  TIGR02415 23BDH: acetoin reductases
    7.8e-05   19.0   0.0    0.00013   18.3   0.0    1.3  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    0.00067   16.9   0.0     0.0015   15.8   0.0    1.6  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.2e-09   1.1e-06       1      89 [.     367     460 ..     367     471 .. 0.75
   2 ?    3.4   0.0     0.021        11     128     186 ..     681     743 ..     652     770 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.2e-09
   TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqekeveg..fdvavvkadvssfeeakaavakveaelGp...vdvlvnnaGit 89 
                 +va+vtG+   iG + c +l ++G+ v+a+++  +++a+ +  e ++    + + ++  d+ ++   +   + ++ +lGp   +d+l+nna  t
  MMETSP1061-20121228|8476_1 367 KVAVVTGSRVKIGYQTCLKLLRAGCFVIATTRFPNAAAATYRAEADFDTwkDRLEIYGLDLRDVTGLELFCRYLQHKLGPaggLDILINNACQT 460
                 79****************************998777777777777776411557777776666655555555555554432229******9755 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.021
   TIGR01829 128 gfGriinissvnGlkGqfGqany...saakaGliGftkalaqegak.kgvtvnviaPGyiate 186
                 ++  ++n+s+++G+  ++  an+     ak+ l  +t++ a++ ak ++v +n i  G+i+ e
  MMETSP1061-20121228|8476_1 681 EHRYVVNVSAMEGKFYRYKMANHphtNMAKSALNMMTRTAAEDLAKnYSVYMNSIDTGWINDE 743
                 44569********9999999997333579999*********9999736899*******99865 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.3e-08   6.5e-06       2      97 ..     363     467 ..     362     484 .. 0.74
   2 !    4.3   0.0    0.0099       5.1     152     193 ..     705     747 ..     634     768 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.3e-08
   TIGR01832   2 sleGkvalvtGantGlGqgiavglaeaGadivgvgi.....selsetqekvealGrkflslkadladeeaakal...vdeaveeagkidilvnnaG.iirredav 97 
                 +l Gkva+vtG+   +G   ++ l +aG+ ++++++     +++  +++  ++   +++   +dl+d ++ + +   +++ +  ag +dil+nna   irr  a 
  MMETSP1061-20121228|8476_1 363 DLSGKVAVVTGSRVKIGYQTCLKLLRAGCFVIATTRfpnaaAATYRAEADFDTWKDRLEIYGLDLRDVTGLELFcryLQHKLGPAGGLDILINNACqTIRRPTAY 467
                 699******************************985221112222334455666778888899****99988551115566666779*******97368887765 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0099
   TIGR01832 152 sytasksavaGltkllanewakk.ginvnaiaPGyletnntea 193
                     +ksa+  +t++ a ++ak+ ++ +n+i  G+++ +n  +
  MMETSP1061-20121228|8476_1 705 HTNMAKSALNMMTRTAAEDLAKNySVYMNSIDTGWINDENPLE 747
                 445689**************985389**********9999654 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   8.8e-09   4.5e-06       2      87 ..     367     458 ..     366     469 .. 0.78
   2 ?    2.6   0.0     0.028        14     129     185 ..     682     742 ..     642     763 .. 0.70

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 8.8e-09
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle...eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaef...gsldiLvnnAG 87 
                 kva+vtG+   ig++   +l +aG+ v+ +      ++a+ +a+++  +   + + + +d+ + + ++   +++++++   g+ldiL+nnA 
  MMETSP1061-20121228|8476_1 367 KVAVVTGSRVKIGYQTCLKLLRAGCFVIATTRFpnaAAATYRAEADFDTWKDRLEIYGLDLRDVTGLELFCRYLQHKLgpaGGLDILINNAC 458
                 99***********************99988765432333344566667777888889999999999888888888875222689******95 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.028
   TIGR01963 129 wGriiniasvhglv...asafKsaYvaaKHglvGltKvlAlEvAet.gitanaicPgyvrt 185
                 +  ++n+++++g       a     + aK +l  +t+++A + A++  + +n+i  g+++ 
  MMETSP1061-20121228|8476_1 682 HRYVVNVSAMEGKFyryKMANHPHTNMAKSALNMMTRTAAEDLAKNySVYMNSIDTGWIND 742
                 345888888888641113344444689*****************85389********9975 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.31   1.6e+02     211     247 ..      71     107 ..      51     111 .. 0.82
   2 !    6.7   0.0    0.0014      0.74       3      94 ..     368     459 ..     366     482 .. 0.83
   3 !   16.0   0.1     2e-06     0.001     121     204 ..     651     738 ..     641     769 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.31
   TIGR02685 211 ampeevkeeyrrkvplgqreasaeqiadvviflvskk 247
                  m+ + k++y +k    + ++sa +  d+     skk
  MMETSP1061-20121228|8476_1  71 GMASKSKQDYIQKNNRKKDNSSATKDNDAASATTSKK 107
                 58899999***************99999877777766 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0014
   TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvv.kadlsnsasllssceeiidacfrafGrcdvlvnnasa 94 
                 +a+vtG+  +iG     kl + G  v+   r  ++aa++  ae + +  +  + +   dl  ++ l   c  + +      G  d+l+nna  
  MMETSP1061-20121228|8476_1 368 VAVVTGSRVKIGYQTCLKLLRAGCFVIATTRFPNAAAATYRAEADFDTWKDRLEIyGLDLRDVTGLELFCRYL-QHKLGPAGGLDILINNACQ 459
                 89************************99999999999988888877766666555156999999999999876.5566777889999999975 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 2e-06
   TIGR02685 121 elfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdq....pllgfslytmakealeGltrsaalelas.lqirvngvapG 204
                 e +  naiap++l   +    +++r+   ++   +vn+  am  +     +  +   +mak al+ +tr+aa +la  + + +n++  G
  MMETSP1061-20121228|8476_1 651 ECMFVNAIAPFVLNSRLQPLLTQQRTGNETEHRYVVNV-SAMEGKfyryKMANHPHTNMAKSALNMMTRTAAEDLAKnYSVYMNSIDTG 738
                 55668********9998877777777777777778885.4554431111566777889*****************96367888887766 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   3.1e-05     0.016       1      85 [.     369     458 ..     369     464 .. 0.78
   2 !   10.7   0.0   0.00013     0.068      96     185 ..     645     744 ..     633     773 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.1e-05
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeela..eelkeagvkaaavkldvsdeeevkelveeveeelg...eidilvnnAG 85 
                 a+vtG+   iG ++ +kl ++g+ v+ t+r  +++a++ +  +++     +  ++ ld+ d + ++ +++ ++++lg    +dil+nnA 
  MMETSP1061-20121228|8476_1 369 AVVTGSRVKIGYQTCLKLLRAGCFVIATTRFPNAAAATYRaeADFDTWKDRLEIYGLDLRDVTGLELFCRYLQHKLGpagGLDILINNAC 458
                 79*************************9987766666555004556666778889999999888888777777776522289******96 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00013
   TIGR01830  96 keedwdevikvnLkgvfnvtkavlkkmikkrsGr......iinissvvgllGnagqanY...aasKaGligltkslakElasr.nitvnavaPGfietdm 185
                 +  +  e++ vn  + f +  +    ++++r+G+      ++n+s++ g       an      +K+ l  +t++ a++la++ ++ +n++  G+i+ + 
  MMETSP1061-20121228|8476_1 645 STPELMECMFVNAIAPFVLNSRLQPLLTQQRTGNetehryVVNVSAMEGKFYRYKMANHphtNMAKSALNMMTRTAAEDLAKNySVYMNSIDTGWINDEN 744
                 3457788999999999******999******996555566999999999988888888733246899*************97538***********9764 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.6e-05    0.0081       1      87 [.     367     459 ..     367     469 .. 0.79
   2 !    5.8   0.1    0.0034       1.7     152     200 ..     708     757 ..     674     771 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.6e-05
   TIGR02415   1 kvalvtGaaqGiGkaiaerLakdG.favavadlneetake..takelkekgtkavavkldvsdkseveeaveqavekl...GeldvlvnnaGv 87 
                 kva+vtG+   iG +   +L + G f +a + +++++a+   ++ +++    +  ++ ld++d   +e   +  ++kl   G+ld+l+nna  
  MMETSP1061-20121228|8476_1 367 KVAVVTGSRVKIGYQTCLKLLRAGcFVIATTRFPNAAAATyrAEADFDTWKDRLEIYGLDLRDVTGLELFCRYLQHKLgpaGGLDILINNACQ 459
                 89*****************9998857788888887776541156677788889999***999999888777777777622269*******965 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0034
   TIGR02415 152 stkfavrgltqtaakeLakkgi.tvnayaPGivktemreeideklaelag 200
                  +k a+  +t+taa++Lak++   +n+   G ++ e   e ++k+a++++
  MMETSP1061-20121228|8476_1 708 MAKSALNMMTRTAAEDLAKNYSvYMNSIDTGWINDENPLERAAKTAKVNN 757
                 5799999************9851579988888887777776777777665 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.6e-07   0.00013     408     508 ..     360     464 ..     351     484 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.6e-07
   TIGR02632 408 kekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeav...aaelvdkfGad.kavalkl.dvtdeeavkaafaevalayGGvdivvnnaGiavskp 508
                 k ++l+++va+vtG+   iG +++++l   G  v+ +    +aa+a+   +a++   + +  +   l l dvt  e     +++     GG+di++nna  ++ +p
  MMETSP1061-20121228|8476_1 360 KTRDLSGKVAVVTGSRVKIGYQTCLKLLRAGCFVIATTRFPNAAAATyraEADFD-TWKDRlEIYGLDLrDVTGLELFCRYLQHKLGPAGGLDILINNACQTIRRP 464
                 6789***************************988877664444444311123333.33222133345434899999999999999999***********8777665 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.9e-06    0.0015       2      96 ..     365     465 ..     364     520 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.9e-06
   TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakv.avldl.naeaaekvaa.airekggkaeavavditdrasvdaavaaaeealgpv...dvlvnnagwdvlkpf 96 
                  +kva+vtg    ig  +c+++ + g+ v a   + na aa   a+ +      + e    d+ d + +++     ++ lgp+   d+l+nna   + +p 
  MMETSP1061-20121228|8476_1 365 SGKVAVVTGSRVKIGYQTCLKLLRAGCFViATTRFpNAAAATYRAEaDFDTWKDRLEIYGLDLRDVTGLELFCRYLQHKLGPAgglDILINNACQTIRRPT 465
                 68************************9752555552333444444414555566778889*********************95555*******98776664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.42
# Mc/sec: 2495.22
//
Query:       MMETSP1061-20121228|8483_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 855.06
//
Query:       MMETSP1061-20121228|8487_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 502.82
//
Query:       MMETSP1061-20121228|8486_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 413.18
//
Query:       MMETSP1061-20121228|8482_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 2121.98
//
Query:       MMETSP1061-20121228|8484_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2929.14
//
Query:       MMETSP1061-20121228|8491_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1308.41
//
Query:       MMETSP1061-20121228|8495_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2724.63
//
Query:       MMETSP1061-20121228|8489_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 2437.40
//
Query:       MMETSP1061-20121228|8496_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 313.47
//
Query:       MMETSP1061-20121228|8492_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.63    7.1   8.6        1.3    6.1   6.0    1.4  1  TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family


Domain annotation for each model (and alignments):
>> TIGR01404  FlhB_rel_III: type III secretion protein, YscU/HrpY family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   6.0   0.00031       1.3      16     207 ..     486     679 ..     482     687 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00031
   TIGR01404  16 rkkGqvakskdlvsavlllalvllllllasvieeklqallllalelaeqpf.alalkevlsellkliltvlllllaivllvtvlssllqvgfvlatealkpdleklnPveglKkifsl.ksliellksilkvvllalivylvlkkslke.lvelaasgldglaeivaellkklilvilvlflvvallDfliqryl 207
                  +kGq++ s  l   vl+ +++ ++++   ++ e  + +++ ++ +a  p+  +a+ +vl+ +l++   ++++ +  ++++ +l + + + +v+a   + ++ +++++  + K+i  +  +    ++s++ +++ +++ +  +  +l   + +l   +l+ ++ ++  +l  l ++++ + +v+  l ++++ + 
  MMETSP1061-20121228|8492_1 486 LRKGQILTSMIL-LYVLCGSVAGYISSRIYKFCEATNWKMNSIATAAALPAvFVAMFTVLNVFLSVAGAATAVSFFTIIVLFLLWVTISAPMVFAGAFIGLKSKAIEVPTKTKQIARViPEAPVHMNSLITMLMGGVLPFGSVCIELAFiMSALWLHQLYYVMGFLLAVLCILAATCAHVSIVLCYLQLCAEDHR 679
                 589999888644.3455556666777777777666666666665555444313568899999999999999999999999999999999**************************86523333346666666666665554444444440445556677777777777777888888888888888777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.18s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 3114.12
//
Query:       MMETSP1061-20121228|8500_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1691.42
//
Query:       MMETSP1061-20121228|8499_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-07   28.6   0.1    1.7e-07   28.6   0.1    1.4  2  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    4.1e-05   20.7   0.1    4.1e-05   20.7   0.0    1.5  2  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.1      0.37   7.6e+02     111     111 ..     115     115 ..      71     152 .. 0.44
   2 !   28.6   0.1   8.3e-11   1.7e-07      15      94 ..     175     256 ..     158     265 .] 0.77

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.37
   TIGR01347 111 k 111
                 +
  MMETSP1061-20121228|8499_1 115 R 115
                 1 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 8.3e-11
   TIGR01347  15 atvaewekkvGdavkkdeliveletDkvs..levaseadGvleellekegdtvesgevlaeleessaaaeaasekskeekee 94 
                   v++w+k+ G+ v+ +++++++ t   +  +++   + G+l+e++++eg +v  ++ l ++ ++ +++e+++++++e +++
  MMETSP1061-20121228|8499_1 175 CFVETWHKAEGELVHPEDVLCDISTPDFVfgMQIDDAEVGLLKEIHVSEGVKVPDRTPLCTIYHKPKKEEEEEKDAAEDDDD 256
                 5699*********************6654248999999************************97655555444444444433 PP

>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.19   3.9e+02     138     138 ..     113     113 ..      59     154 .. 0.51
   2 !   20.7   0.0     2e-08   4.1e-05      17      92 ..     178     254 ..     164     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.19
   TIGR01349 138 k 138
                  
  MMETSP1061-20121228|8499_1 113 M 113
                 0 PP

  == domain 2    score: 20.7 bits;  conditional E-value: 2e-08
   TIGR01349  17 akwkkkeGDkvkeGdviaeietDkAt..ldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknykles 92 
                   w+k eG+ v++ dv+++i+t   +  ++++  e g l  i v eg k vp  ++++ + ++++ +e+  k+   ++
  MMETSP1061-20121228|8499_1 178 ETWHKAEGELVHPEDVLCDISTPDFVfgMQIDDAEVGLLKEIHVSEGVK-VPDRTPLCTIYHKPKKEEEEEKDAAEDD 254
                 57********************88762366677788*************.********99999888887777766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1520.74
//
Query:       MMETSP1061-20121228|8504_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 560.95
//
Query:       MMETSP1061-20121228|8501_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2333.38
//
Query:       MMETSP1061-20121228|8503_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-95  317.7   0.1      3e-86  287.2   0.0    2.1  2  TIGR02749 prenyl_cyano: solanesyl diphosphate synthase
    6.3e-53  177.8   0.1    8.2e-49  164.2   0.0    2.1  2  TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II
  ------ inclusion threshold ------
      0.013   13.1   3.1      0.025   12.2   2.2    1.4  1  TIGR00966 3a0501s07: protein-export membrane protein SecF


Domain annotation for each model (and alignments):
>> TIGR02749  prenyl_cyano: solanesyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.0   1.2e-10   1.6e-07      11      62 ..     175     229 ..     168     243 .. 0.83
   2 !  287.2   0.0   2.2e-89     3e-86      62     320 ..     289     551 ..     285     553 .] 0.96

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.2e-10
   TIGR02749  11 ekdlealtknlk.slvGakhPilsaaaehlf..eagGkrlrPaivllvsrataee 62 
                 + d+++l++ ++ +l+G++hP+l+ aa  +f    gGk++rP +v+l+sra+a++
  MMETSP1061-20121228|8503_1 175 KADVDSLSESIReDLLGTDHPVLNQAAAYFFgdADGGKKVRPLMVMLLSRALADT 229
                 568888888887359**************9953359***************9865 PP

  == domain 2    score: 287.2 bits;  conditional E-value: 2.2e-89
   TIGR02749  62 eeeltarhrrlaeitelihtaslvhddvvdesdvrrgvetvhslfdtrvavlaGdflfaqaswylanlenlevvkllskvikdfaeGeikq....glnrfdsdlsledyleksyyktaslvaasskaaavlsevdsevaedlyeyGkhlGlafqvvddildftgsteklGkPaasdlkkGnltaPvlfaleeepklselierefsekkdlekalelvkeskaikkarelakekaqlalkslevlpksaskealkelvefvler 320
                 +++l + +rrlaei e+ihtasl hddv+d s++rrg+++vh  f++++a+laGd+l+a+as  la+l  +evv+ +s++i+++  Ge+ q    ++++ d +  +  yl+k yykt sl+a+s+k+aa+l+e + e++ + y+yGkh+G+afq+vdd+ldf g+ +++GkPa +dlk G  taPvlfa ee p+l+ +++r+f+e++d+e++ elv +s++i++++ela+ +a++a++++   + +  ++al +l+  v++r
  MMETSP1061-20121228|8503_1 289 RQDLPQAQRRLAEISEMIHTASLFHDDVIDGSETRRGKSAVHMVFGNKMAILAGDYLLARASISLARLRHVEVVECMSTIIEHLVRGEVMQmrgtSSSEGDQNERMVYYLKKNYYKTGSLMANSCKSAALLAECPPELVVAAYKYGKHVGMAFQLVDDVLDFEGDVQSMGKPALADLKAGLSTAPVLFAAEEFPELEVMMDRKFKEDGDVERSRELVLQSRGIERTKELARVHAERAMEAILPWEATEHRDALVNLAYKVVQR 551
                 678999***********************************************************************************9855434567788889999****************************************************************************************************************************************************9999988 PP

>> TIGR02748  GerC3_HepT: heptaprenyl diphosphate synthase component II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   1.9e-05     0.026      10      56 ..     175     224 ..     171     238 .. 0.79
   2 !  164.2   0.0     6e-52   8.2e-49      68     317 ..     299     551 ..     281     553 .] 0.90

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.9e-05
   TIGR02748  10 kedieviekelekavq.aeaevlkeaalell..kaGGkrirPvfvllagk 56 
                 k d++++ + +++ +  ++++vl++aa  ++    GGk++rP++v+l ++
  MMETSP1061-20121228|8503_1 175 KADVDSLSESIREDLLgTDHPVLNQAAAYFFgdADGGKKVRPLMVMLLSR 224
                 578999988887665449*********999843469********987655 PP

  == domain 2    score: 164.2 bits;  conditional E-value: 6e-52
   TIGR02748  68 vavalelihmaslvhddviddaelrrGketikskwdnriamytGdyllaksletiteiedprvhkilsktivevclGeieqikdky..nfdqnlrt..ylrrikrktalliaascqlGaivagadeeivkklyyfgyyvGmsyqiiddildfvgteeelGkPaGedllqGnvtlPvlyaledea.lkkklekvleettaeeleelieevkksdaiekalavsdlylkkalelldelPkseakkalkeiakyigkr 317
                 +a   e+ih asl hddvid +e rrGk++++  ++n++a+ +Gdylla++   ++++++++v + +s++i ++ +Ge+ q++     + dqn r+  yl++   kt  l+a sc+  a+ a+   e v + y++g +vGm++q++dd+ldf g  + +GkPa  dl+ G  t Pvl+a e+   l   + + ++e+   ++e   e v +s +ie++++++ ++ ++a+e++    ++e + al ++a  + +r
  MMETSP1061-20121228|8503_1 299 LAEISEMIHTASLFHDDVIDGSETRRGKSAVHMVFGNKMAILAGDYLLARASISLARLRHVEVVECMSTIIEHLVRGEVMQMRGTSssEGDQNERMvyYLKKNYYKTGSLMANSCKSAALLAECPPELVVAAYKYGKHVGMAFQLVDDVLDFEGDVQSMGKPALADLKAGLSTAPVLFAAEEFPeLEVMMDRKFKED--GDVERSRELVLQSRGIERTKELARVHAERAMEAILPWEATEHRDALVNLAYKVVQR 551
                 566679****************************************************************************97651155787664439********************************************************************************998663666665555554..4566666778999************************************9887776 PP

>> TIGR00966  3a0501s07: protein-export membrane protein SecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.2   1.8e-05     0.025     182     231 ..     235     285 ..     225     287 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.8e-05
   TIGR00966 182 kkratvtevld.lsinqtLtRtivTsvttllavlallvfgekvlkdfslal 231
                 ++++t+t+ +d  s + t+t t+ T+ tt  + lal +fg++++  fsl l
  MMETSP1061-20121228|8503_1 235 NTTTTTTTTADsSSATTTVTTTVATTTTTNPPDLALPLFGNQTSTVFSLPL 285
                 445555566661568999******************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.21s 00:00:00.44 Elapsed: 00:00:00.25
# Mc/sec: 2919.60
//
Query:       MMETSP1061-20121228|8507_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-16   58.6  23.4    3.5e-08   30.6   9.7    4.0  3  TIGR00769 AAA: ADP/ATP carrier protein family
    5.2e-05   20.2  12.4    5.2e-05   20.2   8.6    1.6  2  TIGR00893 2A0114: D-galactonate transporter


Domain annotation for each model (and alignments):
>> TIGR00769  AAA: ADP/ATP carrier protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   9.7   1.7e-11   3.5e-08       5     297 ..     159     434 ..     156     448 .. 0.71
   2 !   12.1   0.3   7.1e-06     0.015     298     346 ..     460     509 ..     455     515 .. 0.91
   3 !   17.2   0.0     2e-07   0.00042     376     436 ..     519     579 ..     511     607 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.7e-11
   TIGR00769   5 elkkilPlfllffcilfnytilrdtkdtlvvtakgsgaevipflkvwvvvPsavivmliyaklsn.vlskealfyaviapflvffalfavvlyPlsdllhpealadkllellpprlkgfiailrkWsfalfyvlaelWgsvvlsllfWgfanqitkideakrfyalfglganvalivsgrvvkyfsklraslsegvdawavslkalmvivvvsg.liiillyrwin........rnvllderlkkaalkekkakpklsakeslkflvsskyildlallviaygisinlvevvWksklkeqyps 297
                 e+ + l l++ +f++   y +lr++kd+++++  g   ++ip  k+   v + ++v+ +y +l +  + k++lfy++ +++ + f + +++l     +     la+k ++  + rl+g +      s+++     e +gsv++s lfW fan    ++ ak  y ++   a + +i+   +v+ ++++   +++        l +l ++++  +    i +y   +        ++ ++++ + + +   kk+k ++++ e l  + + +y++ +  +   + + + +v+ + k   ke +++
  MMETSP1061-20121228|8507_1 159 EMMRTLCLAMTLFFMIGGYWMLRSLKDSVLMALCGY--QAIPKAKMLS-VFVVLGVVSVYNHLLDsDIAKHQLFYVFGTFYFMLFIVISFMLMNP--S---IGLANKYQD--EGRLLGWV------SYCA----IESFGSVMVS-LFWSFANSNISLETAKSSYGVMVAFAQLGSILGPAIVTRYAEEWG-IAQ----C-YLLGSLNMLLLQGTmYFYIRTYGSNEsrakeeaaKEKAVKDAAGDESAPPKKKKERAGILEGLILFWKYNYVKGIFAISCLFMVEVTIVDFTLKVLAKEYFSE 434
                 67788999999999999***********99998887..8899999865.456788889999876516899*******998766666666655322..2...235666655..34555544......6665....5999******.6******************************99888765554433.333....2.222223333222220223333433334443333333333333333334558889**************************************99999988875 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 7.1e-06
   TIGR00769 298 kneysafmgefstltGvvsvllmlll.gnvlrkygWlvaalvtPlvlllt 346
                  n+ ++fmg f ++t   s+++ ll  + v+rk+g   a l+ P++ l+ 
  MMETSP1061-20121228|8507_1 460 SNAIASFMGLFGVATNSLSFIFSLLGtSAVIRKFGLRLALLLFPTLCLVV 509
                 578899*******************999*****************99986 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 2e-07
   TIGR00769 376 vvvgaiqnvlsksvkyslfdatkemayiPldeeqkvkgkaaidvvaarlGksGGaliqqgl 436
                  +++ +  +l k+  y+l ++tkem y P +   + k+k  id+ +ar  k+ G+++ +++
  MMETSP1061-20121228|8507_1 519 LYIVFLAMILLKANSYALNNPTKEMLYQPTSGAVRYKAKSWIDIFGARGSKALGSVVTNAF 579
                 688889999**********************************************998876 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   8.6   2.5e-08   5.2e-05     217     385 ..     163     336 ..     156     350 .. 0.79
   2 ?   -3.6   0.6      0.43   8.7e+02     292     292 ..     498     498 ..     454     537 .. 0.49

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.5e-08
   TIGR00893 217 viglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkg...kslvlarktaiiaglvlsllliatn.lva..skiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvva 385
                 ++ la+  f +  + +++ +   + l    g++++  + + s+ +++g+v+++     sd++  +    +  +    + +i ++++  +++++n + +    +  ++  a+  fg+++ ++ w+   +++s e+a+++ G++ ++++l++i+gP+++   a+  G +a  +l+ +
  MMETSP1061-20121228|8507_1 163 TLCLAMTLFFMIGGYWMLRSLKDSVLMALCGYQAIPKAKMLSVFVVLGVVSVYNHLLDSDIAKHQLfyvFGTFYFMLFIVISFMLMNPSIGLANkYQDegRLLGWVSYCAIESFGSVMVSLFWSFANSNISLETAKSSYGVMVAFAQLGSILGPAIVTRYAEEWG-IAQCYLLGS 336
                 55566666666666666666666777777888999999999********************999985443334445556667777777788888666655567789999************************************************99999999.555555444 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.43
   TIGR00893 292 a 292
                 a
  MMETSP1061-20121228|8507_1 498 A 498
                 1 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.30
# Mc/sec: 2974.15
//
Query:       MMETSP1061-20121228|8508_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-24   84.6   0.0    2.5e-24   84.2   0.0    1.2  1  TIGR01499 folC: bifunctional protein FolC


Domain annotation for each model (and alignments):
>> TIGR01499  folC: bifunctional protein FolC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   0.0   6.2e-28   2.5e-24      89     165 ..      38     134 ..       2     142 .. 0.79

  Alignments for each domain:
  == domain 1    score: 84.2 bits;  conditional E-value: 6.2e-28
   TIGR01499  89 s.......pskptfFelltllaflyFae...eqvdvavlEvGlGGrlDaTnv..........iepevsvitsiglDHteiLGdtleeIAkeKagIik 165
                 +       p  p +F++ltl+ +++F +   ++vd +vlEvG+GGr+DaTn           +e+ + ++t ++lDHt+iLG+tle+IA+eK+gI+ 
  MMETSP1061-20121228|8508_1  38 KqddndppPTLPGYFRMLTLMGLYTFLHhfpTPVDAIVLEVGMGGRYDATNFldlgmvgaehFERVAHGVTLLDLDHTRILGNTLEKIAWEKGGIFS 134
                 034556777889**************998999*******************822222222223456789**************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1201.80
//
Query:       MMETSP1061-20121228|8510_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.71
# Mc/sec: 728.73
//
Query:       MMETSP1061-20121228|8505_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 1712.99
//
Query:       MMETSP1061-20121228|8512_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|8514_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 881.93
//
Query:       MMETSP1061-20121228|8509_1  [L=747]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-73  244.1  20.4    7.4e-49  164.5   0.7    2.5  2  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    2.2e-30  103.7  11.6    6.7e-22   75.7   2.0    2.2  2  TIGR00898 2A0119: cation transport protein
    1.3e-22   78.1   8.6    1.3e-22   78.1   6.0    2.7  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    4.1e-19   66.8   3.9    1.8e-18   64.6   2.5    1.9  2  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    1.7e-15   54.8  13.4    6.8e-12   42.9   2.2    3.1  3  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    2.3e-13   48.3   9.6    2.3e-13   48.3   6.7    3.4  2  TIGR00880 2_A_01_02: multidrug resistance protein
    2.8e-13   47.4  13.2    1.4e-12   45.0   1.1    2.4  2  TIGR00893 2A0114: D-galactonate transporter
    2.9e-10   37.9   4.7    2.9e-10   37.9   3.2    2.3  3  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    7.2e-09   31.9   3.2    7.2e-09   31.9   2.2    2.1  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
    1.5e-07   28.9   2.1    1.5e-07   28.9   1.4    2.9  3  TIGR00900 2A0121: H+ Antiporter protein
    2.4e-07   27.9   9.6    0.00022   18.1   1.3    2.7  3  TIGR00887 2A0109: phosphate:H+ symporter
    9.3e-07   25.5   4.4    2.2e-06   24.3   3.1    1.5  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    3.3e-05   21.0   4.2    3.6e-05   20.8   1.3    2.2  2  TIGR00886 2A0108: nitrite transporter
  ------ inclusion threshold ------
      0.026   11.1  12.3     0.0061   13.2   3.7    2.3  2  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.5   0.7   2.5e-51   7.4e-49      48     272 ..     127     340 ..      89     342 .. 0.92
   2 !   83.8   8.6   6.9e-27     2e-24     308     510 .]     472     699 ..     458     699 .. 0.81

  Alignments for each domain:
  == domain 1    score: 164.5 bits;  conditional E-value: 2.5e-51
   TIGR00879  48 lgsnyvfvallsllaalagllfgYdtavisaalallkfefkftsnlsdasssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifgsgklvanntlgwriplglqlipalllllglfflPesprwLvekgkeeeArkslarlrgeks 272
                 +   +++v+ l+  a+l+g+lfgYd + is++l +l ++f++          q++lvvsil+vGg++ga ++g l dr grk +++ +  +fv ga+   + a ++    +++gR+++G gv ++ +  ++Y+ E Ap + Rga+vs+++ +i++G l+a+i g +      +  wri +g++ i a+++l+g++ lPesp wL ekg+ eeAr++la ++g+++
  MMETSP1061-20121228|8509_1 127 TLLPSWYVVQLTATASLGGCLFGYDMGAISGTLPQLTTTFDLN-------DNQKELVVSILYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWL-YLAPSYA--AVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLLAYIAG-YVYADEGAGEWRIVFGVAGILAAVQLVGMLKLPESPAWLAEKGRDEEARRALALINGTTD 340
                 45568**************************************.......55*********************************************99.6666676..9******************************************************.77778899***********************************************99986 PP

  == domain 2    score: 83.8 bits;  conditional E-value: 6.9e-27
   TIGR00879 308 riirrlllgvvlqafqQltGiNaimyYsptifenl.........Gvst....dtallvsiivgavnvaaTfvaiflvdrfGRrtllliG....aagmaiclfvlgilgvssvtg.........sskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflpetkgltleei 510
                 r++++  + ++l+a qQ+ G   i++Y+p if ++         G ++    dt+ +  +i+g+v+++ T+++i+ ++++GRr+ll+iG    a+g ++ ++ +g+    +  +         ++ +   +a+ ++ll++ +y++++gp  w+l+sEifp+++R+ +  ++++   +   + +++f+ + +  +g+ +vF ++ +++v++++++y  +p t g+t+e+i
  MMETSP1061-20121228|8509_1 472 RYRQQTYIALFLAAGQQFCGQTNILNYAPLIFAEAmkndfqnngGNDNdqteDTKDMSMVIIGVVKFFVTVLVIWRIEYIGRRSLLIIGngliALGLLALVVAFGGSNNAGNGDdgasswspmTNIKTFDLALPGVLLVVSGYSMSFGPLTWLLTSEIFPTEIRGRALGCSSIITSMCGALSTQTFLLAQS-LLGPSFVFGIYCVITVAGALFAYLAIPDTGGKTVEQI 699
                 488999999**********************965533333333254442012344556689****************************9887777777777777544444444886544432222223368889********************************************************.7**********************************97 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.7   2.0   2.3e-24   6.7e-22     110     284 ..     158     334 ..     132     340 .. 0.93
   2 !   32.9   1.1   2.2e-11   6.5e-09     359     501 ..     528     694 ..     464     698 .. 0.75

  Alignments for each domain:
  == domain 1    score: 75.7 bits;  conditional E-value: 2.3e-24
   TIGR00898 110 lsstivtEwdlvcedawkvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird.....WRwLlllvslPlvlflvlvwfvpESpRwlisqgrieeAlkiLkr 284
                 +++++ t +dl      +++l+ s++ vG   G+ + G l+Dr GRk  ++l+ ++     +   ++p+y  ++  r++vGvg a + v+ ++   E  p+++R  ++ + e + +lG+ll  + +Y+  d     WR+   ++ +   + lv ++ +pESp wl  +gr eeA+++L  
  MMETSP1061-20121228|8509_1 158 TLPQLTTTFDLND---NQKELVVSILYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLAPSYAAVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLLAYIAGYVYADegageWRIVFGVAGILAAVQLVGMLKLPESPAWLAEKGRDEEARRALAL 334
                 6678899999976...99*************************************99999999999******************************************************9999999999999*******************************************9975 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 2.2e-11
   TIGR00898 359 ldllisglvelpaklitlllidrLgRrktmaaslllagvallllllvpeelk.....................llrtalavvgkagissaFq.maylytaELYPTvvRnlgvgvcstmarvGsiisPflvyvlgevslflplvifgvlallagllsll....LPetkgv 501
                 ++++i g+v +   +++++ i+++gRr  +++ + l ++ ll+l++                            l +  +++  +g s++F     l+t+E++PT +R  ++g +s +  + + +s + ++   + sl+ p ++fg+ ++++ + +l+    +P t g+
  MMETSP1061-20121228|8509_1 528 MSMVIIGVVKFFVTVLVIWRIEYIGRRSLLIIGNGLIALGLLALVVAFGGSNnagngddgasswspmtniktfDLALPGVLLVVSGYSMSFGpLTWLLTSEIFPTEIRGRALGCSSIITSMCGALSTQTFL--LAQSLLGPSFVFGIYCVITVAGALFaylaIPDTGGK 694
                 7899**************************9998888888888777777666789***********998665545555555556666666642567*********************99988888887777..455566666666666665544433311126666665 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   6.0   4.6e-25   1.3e-22      10     216 ..     129     337 ..     122     346 .. 0.91
   2 ?   -4.8   2.0       6.7   1.9e+03      72     102 ..     544     574 ..     528     576 .. 0.59
   3 ?    0.3   0.1      0.18        54     362     382 ..     625     645 ..     598     692 .. 0.73

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 4.6e-25
   TIGR00895  10 klsryqirvlilsflivlvdGldllvlgfaapalskewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafg...WrslflvggiiplllllllikvLpEsikflvek.kpekvrkilnaiap 216
                  +s y++++ + + l   + G+d+ +++  +p+l+  ++l+  +   ++s+  +G ++Ga ++g l+DrigRk  ++++ ++f  + l + la ++   ++ Rf+ g+G+     + ++ + E ap   r+ +v++  +   +G +++  +a+ + ++ g   Wr++f v+gi++++ l+  +  LpEs ++l ek ++e++r+ l+ i+ 
  MMETSP1061-20121228|8509_1 129 LPSWYVVQLTATASLGGCLFGYDMGAISGTLPQLTTTFDLNDNQKELVVSILYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLAPSYAAVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLLA-YIAGYVYADEGageWRIVFGVAGILAAVQLV-GMLKLPESPAWLAEKgRDEEARRALALING 337
                 56678888888999999999******************************************************************************************99999999**************************9996.78888888765556*********99888765.5677***********999**9999988765 PP

  == domain 2    score: -4.8 bits;  conditional E-value: 6.7
   TIGR00895  72 fgplaDrigRkrvllvsillfsvftlasala 102
                 + +    igR+ +l+++  l++++ la+++a
  MMETSP1061-20121228|8509_1 544 VIWRIEYIGRRSLLIIGNGLIALGLLALVVA 574
                 4444455777777777777777776666665 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.18
   TIGR00895 362 lmaefYptaiRatgvgwaigi 382
                 l++e++pt+iR+ ++g    i
  MMETSP1061-20121228|8509_1 625 LTSEIFPTEIRGRALGCSSII 645
                 456677777777777665444 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   2.5   6.2e-21   1.8e-18      19     205 ..     143     329 ..     134     340 .. 0.91
   2 ?   -0.4   0.0      0.34     1e+02     353     391 ..     626     663 ..     607     676 .. 0.79

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 6.2e-21
   TIGR00891  19 lgylldafdfflvalvlaevaeefdrttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvvvnvlgdsWriLfflsilpiilalflrkrvpeaevwkeklkakklvk 205
                 lg  l ++d   ++ +l ++ ++fd+   +    +s+ ++   +Ga + G + Dr+gr+++++ + ++f+ + l    ap+y  ++  r+v+G+g++    +  ++  e +P + r+ +  +     ++Gf+la ++  v+       Wri+f+++ +++ + l+  +++pe+  w + + + +  +
  MMETSP1061-20121228|8509_1 143 LGGCLFGYDMGAISGTLPQLTTTFDLNDNQKELVVSILYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLAPSYAAVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLLAYIAGYVYADEGAGEWRIVFGVAGILAAVQLVGMLKLPESPAWLAEKGRDEEAR 329
                 5556678999999999********************************************************************************9876667788999****************************99999988889********999*****************98877665555 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.34
   TIGR00891 353 laelapadaravvaGltYqlGnLaaalasiiearlaerl 391
                  +e++p+++r+  +G +  + ++ +al++    +la++l
  MMETSP1061-20121228|8509_1 626 TSEIFPTEIRGRALGCSSIITSMCGALSTQ-TFLLAQSL 663
                 4699*************9999999999654.45667665 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   2.2   2.3e-14   6.8e-12      44     208 ..     180     330 ..     172     341 .. 0.88
   2 !    8.8   0.1   0.00055      0.16     259     313 ..     522     576 ..     457     582 .. 0.66
   3 !    9.0   0.3   0.00047      0.14     312     393 ..     594     675 ..     587     682 .. 0.70

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 2.3e-14
   TIGR00883  44 gFlaRplGaivfGalgDrlGRkktLvvtlllMgigtvligllPsyatiGiwApilLlllrliQGlslGgEyggaalllaEsApegkrglygsfqqvgasvglllaalvvlllsallseealleWgWRiPFlvsvvlvligLylRlkleEtpvfekekekkkkear 208
                  ++   +Ga++ G l Dr+GRk t+++t ++  +g++ + l Psya+        +++ r++ G+++     +  ++l E Ap + rg + s++++  s+g+lla  + ++      +e   +  WRi F v+ +l+++ L+  lkl E+p+  +ek + ++++r
  MMETSP1061-20121228|8509_1 180 LYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLAPSYAA--------VVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLLAYIAGYV----YADEG--AGEWRIVFGVAGILAAVQLVGMLKLPESPAWLAEKGRDEEARR 330
                 5677789**************************************87........5899***9999988888888*****************************9876654....45666..4569****************************99988886555 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00055
   TIGR00883 259 saesallvlllalillllviplsgllsdriGrrkvlilltvlaallavpllsall 313
                 ++++  + +++++++ ++v+ l+ + ++ iGrr++li+ + l+al  + l++a+ 
  MMETSP1061-20121228|8509_1 522 TEDTKDMSMVIIGVVKFFVTVLVIWRIEYIGRRSLLIIGNGLIALGLLALVVAFG 576
                 344445667788899999999999**********999999998888777777665 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.00047
   TIGR00883 312 llesssillvlllllllalivamytgvmaall.aelfptevRytgvslaynlasviggglapviaaaLvaltgdkaavgiyll 393
                 +++ +++ l+l  +ll+   ++m +g+ + ll +e+fpte+R ++++ +  + s+ g+ ++++  +a ++l g ++ +giy +
  MMETSP1061-20121228|8509_1 594 MTNIKTFDLALPGVLLVVSGYSMSFGPLTWLLtSEIFPTEIRGRALGCSSIITSMCGALSTQTFLLA-QSLLGPSFVFGIYCV 675
                 6666677777777888888889999998876526****************99999998666543222.222333555555555 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   6.7   7.7e-16   2.3e-13      10     137 ..     183     312 ..     175     315 .. 0.92
   2 ?   -3.0   5.8       5.1   1.5e+03       4      48 ..     530     574 ..     528     691 .. 0.74

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 7.7e-16
   TIGR00880  10 gqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla..qalgwralflilallallafilllfl 137
                 g ++ + + g l dr+Grk  ++++ fifv+++l + l+ +++  +  r+++G+g a++ va  +++++ ++ e r++++++  a+i+lg++l+ ++G v a   a +wr++f ++++la++ ++ +l l
  MMETSP1061-20121228|8509_1 183 GGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLAPSYAAVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLLAYIAGYVYAdeGAGEWRIVFGVAGILAAVQLVGMLKL 312
                 55566677777788************************************************************************************999999999***************99877655 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 5.1
   TIGR00880   4 lagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals 48 
                 +++++++ ++v  l+   ++ +Gr+++l++g  +++l+ l+++++
  MMETSP1061-20121228|8509_1 530 MVIIGVVKFFVTVLVIWRIEYIGRRSLLIIGNGLIALGLLALVVA 574
                 578899999999999999999********9877666665554444 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.0   1.1   4.9e-15   1.4e-12      12     181 ..     154     321 ..     147     339 .. 0.86
   2 !    7.2   2.9    0.0015      0.45     317     397 ..     607     686 ..     588     688 .. 0.88

  Alignments for each domain:
  == domain 1    score: 45.0 bits;  conditional E-value: 4.9e-15
   TIGR00893  12 tlSiAavtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktl..avaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs...WqlvFiieGvlaiilgvlilkvikdkpekakvlke 181
                 ++S + ++l + + l+++q  lv+s+ ++g +++   gg l+driG k+t+  + +i+++g + l  a   ++ + ++ R+++G+  a++  +   ++++  P + r+++vs+  + ++lg ++ + ++g +++  +   W++vF + G+la++  v +lk+     e++++l+e
  MMETSP1061-20121228|8509_1 154 AISGTLPQLTTTFDLNDNQKELVVSILYVGGAFGACIGGSLCDRIGRKVTImlTDFIFVFGALWLYLA--PSYAAVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLL-AYIAGYVYADEGageWRIVFGVAGILAAVQLVGMLKLP----ESPAWLAE 321
                 689999****************************************8876511669*********999..999***********************************************9876.569999999999999*****999999988887777653....33334444 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0015
   TIGR00893 317 alvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalaligalsvll 397
                 +l+++++ +  ++ ++w + s+ ++ ei g + G  +++  + g +  +++  +++  G  ++++ + +++ ++gal + l
  MMETSP1061-20121228|8509_1 607 VLLVVSGYSMSFGPLTWLLTSEIFPTEIRGRALGCSSIITSMCGALSTQTFLLAQSLLG-PSFVFGIYCVITVAGALFAYL 686
                 466777888888***********************************************.***************997655 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   3.2     1e-12   2.9e-10      27     170 ..     158     303 ..     145     318 .. 0.86
   2 ?   -3.1   0.4         3   8.7e+02      67      79 ..     551     563 ..     522     575 .. 0.46
   3 ?   -1.2   0.0      0.76   2.2e+02     160     199 ..     668     706 ..     634     715 .. 0.74

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 1e-12
   TIGR00710  27 alpeiakdlsvsasavqltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGg.yvlvfl.sWhaiFavlsligi 170
                 +lp+++  ++ +  + +l  +   +g a+g  + G l D+ GRk  ++l  ++f+ ++l l l+++ +  ++ Rf+ ++g++++ V     +r + + e    + s+    + l  lla + G  y ++ + +W+ +F v  + + 
  MMETSP1061-20121228|8509_1 158 TLPQLTTTFDLNDNQKELVVSILYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLAPSYAAVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLLAYIAGYvYADEGAgEWRIVFGVAGILAA 303
                 699******************************************************************************************99999899999999999999988888666654555554368888877655444 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 3
   TIGR00710  67 yGRkpvlLlgllv 79 
                  GR+  l++g  +
  MMETSP1061-20121228|8509_1 551 IGRRSLLIIGNGL 563
                 3444444444433 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.76
   TIGR00710 160 aiFavlsligillvaliflllpeTkakekriqistsvetf 199
                  +F +  +i+++ ++ ++l +p+T  k    qi +s++++
  MMETSP1061-20121228|8509_1 668 FVFGIYCVITVAGALFAYLAIPDTGGKT-VEQIDESLKQM 706
                 5788888888888888888888887766.44555555554 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   2.2   2.5e-11   7.2e-09     188     380 ..     157     338 ..     136     342 .. 0.84
   2 ?   -1.1   0.3      0.24        70     653     738 ..     606     693 ..     596     697 .. 0.61

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 2.5e-11
   TIGR01299 188 fvlpsaekdlclsdsnkgllglivylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaamawaiiphygwsfsmgsayqfhswrvfvlvcalpsvsavvalttqpesprfllevgkhdeawmvlklvhdt 380
                   lp   + + l+d +k l+ +i+y+g   ga + g l+d++grk +++++  +  + a++  +   y   +  r++ gvg+  +     +y+ e    e rg  +s       +g +       a i  y ++     a     wr+   v+ + + + +v +   pesp +l e+g+ +ea   l l+  t
  MMETSP1061-20121228|8509_1 157 GTLPQLTTTFDLNDNQKELVVSILYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLAPSYAAVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLL------AYIAGYVYAD--EGA---GEWRIVFGVAGILAAVQLVGMLKLPESPAWLAEKGRDEEARRALALINGT 338
                 568899999999***************************************99999999999999******************9999999*************9999876666666543......4455555443..333...479976666665555566666789****************9999998766 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.24
   TIGR01299 653 allclynglsiaawnaldvltvelypsdkratafgflnal...cklaavlgiliftslvsitkaipillasavlvlgslla.lklpetrt 738
                 ++l + +g s++      +lt e++p++ r  a+g    +   c + +    l+  sl++ +    i     + v g+l a l +p+t +
  MMETSP1061-20121228|8509_1 606 GVLLVVSGYSMSFGPLTWLLTSEIFPTEIRGRALGCSSIItsmCGALSTQTFLLAQSLLGPSFVFGIYC--VITVAGALFAyLAIPDTGG 693
                 66777777777766666789***********99997655500055444444455556655554444443..3334555554356677655 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   1.4   5.2e-10   1.5e-07     224     355 ..     150     279 ..     132     287 .. 0.85
   2 ?   -0.6   0.1      0.49   1.4e+02      37      84 ..     529     575 ..     519     581 .. 0.60
   3 ?    2.9   0.0     0.043        13     322     353 ..     623     654 ..     592     665 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 5.2e-10
   TIGR00900 224 vfapiisvllpyvtskvlrrssvevgvvlaafglGallGalllgllgkylkraalitiavlviglailvlgllnpnlllllvlaaaiGvvvglinviigtllqrsvpaellgRVfglqeslssaaaplglil 355
                   +++is +lp  t+  ++++  +  +v + + +G + Ga + g+l  ++ r ++i++  ++     l l l+++ + ++++  +++Gv+v++  v+ +t+l + +p e +g++++++e+  s+   l +i+
  MMETSP1061-20121228|8509_1 150 YDMGAISGTLPQLTTT-FDLNDNQKELVVSILYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLAPS-YAAVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLLAYIA 279
                 4589999********9.9999999999*****************9999999999999866555555555666664.********************************************999988888875 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.49
   TIGR00900  37 slaalagllplvvvspiaGvlvDRldrkkvmv.gaDliravlvavlpfv 84 
                 s++ ++g++ + v+++++   ++++ r+ +++ g  li ++l+a+++++
  MMETSP1061-20121228|8509_1 529 SMV-IIGVVKFFVTVLVI-WRIEYIGRRSLLIiGNGLIALGLLALVVAF 575
                 443.34555555555555.456788888765514567777777777665 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.043
   TIGR00900 322 gtllqrsvpaellgRVfglqeslssaaaplgl 353
                   l+ +++p+e++gR  g  + + s++++l+ 
  MMETSP1061-20121228|8509_1 623 WLLTSEIFPTEIRGRALGCSSIITSMCGALST 654
                 4567899**********************985 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   1.2     3e-05    0.0086      12     167 ..     132     276 ..     122     284 .. 0.81
   2 ?   -3.1   0.0       1.9   5.6e+02     203     239 ..     291     327 ..     289     331 .. 0.88
   3 !   18.1   1.3   7.5e-07   0.00022     396     501 ..     607     701 ..     527     702 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3e-05
   TIGR00887  12 wrhvkaivvaGvGFftDsYDlFaislvtkllgyvYyetkgklpssvsalvkasasvgtllgqllfglladllgrkrvygleliivivatvasalsakssalsvvatllfyrlllgvGiggdyplsaiitsefatkkrRGaliaavFamqgfGilag 167
                 w+ v++ + a +G  +  YD+ ais + + l      t   l+ + ++lv     vg  +g  + g l d++grk+   l+ +i ++ ++   l ++         ++  r+++gvG+        +   e a + +RGa+++   a  ++G l +
  MMETSP1061-20121228|8509_1 132 WYVVQLTATASLGGCLFGYDMGAISGTLPQLT-----TTFDLNDNQKELVVSILYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLAPSYA------AVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLLA 276
                 55555566666666666666666665544443.....345678888889999999***********************************999988654......45667999*****999999999****************9999999998865 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.9
   TIGR00887 203 wrillglgavpaalalyfrltipetarytadvakdve 239
                 wri+ g+  + aa++l   l++pe++   a+  +d+e
  MMETSP1061-20121228|8509_1 291 WRIVFGVAGILAAVQLVGMLKLPESPAWLAEKGRDEE 327
                 9***********************9999888888776 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 7.5e-07
   TIGR00887 396 alyvlaqfFanFGPnattFivPaevFPaRlRstahGisaaaGk.vGaiiaqlalslladkgaakkgkptgiwvenvleifalvmllGilftlL.iPetkgksleelsr 501
                 +l v+  + + FGP   t+++ +e+FP+ +R+ a G s  +   +Ga+ +q +++l+++            + + v+ i++++   G lf+ L iP+t gk++e++++
  MMETSP1061-20121228|8509_1 607 VLLVVSGYSMSFGP--LTWLLTSEIFPTEIRGRALGCSSIITSmCGALSTQ-TFLLAQS----------LLGPSFVFGIYCVITVAGALFAYLaIPDTGGKTVEQIDE 701
                 556777788899*9..5899*****************99766515665554.5555554..........345557999***********997669**********985 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   3.1   7.5e-09   2.2e-06      70     213 ..     165     307 ..     158     317 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 7.5e-09
   TIGR00894  70 efaWseklqGlilssvfygslilqipvGylakkygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesd..lgWpavfYifgivgtvvli 213
                 +f+ + +++ l+ s ++ g  +    +G l ++ g k +i  + ++ ++ +l +  a   ++a v++ R++ G++ ++   a  + l   +P + R+ +vs+  +  +lG l+++ i+G++   +  + W +vf + gi ++v l+
  MMETSP1061-20121228|8509_1 165 TFDLNDNQKELVVSILYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLA--PSYAAVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLLAY-IAGYVYADEgaGEWRIVFGVAGILAAVQLV 307
                 68889999999999999999999999***********************99999887..58999************9999999999999999999***************99887.6677654444899************99876 PP

>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   1.3   1.2e-07   3.6e-05      25     105 ..     160     238 ..     153     244 .. 0.92
   2 ?   -1.6   0.0      0.81   2.4e+02     114     132 ..     625     643 ..     601     704 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.2e-07
   TIGR00886  25 vqiikedlgLskaqlallvavpvlatavlRiilgflvdkfGpRkttallllllaiPllllalavssfsellllrlliGiaG 105
                 +q++  +++L+ +q+ l+v +  +++a+   i g l+d++G + t++l+  + +   l+l la  s++  ++ r+++G++ 
  MMETSP1061-20121228|8509_1 160 PQLT-TTFDLNDNQKELVVSILYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLAP-SYAAVVAGRFVVGVGV 238
                 4444.79*********************************************************.*************975 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.81
   TIGR00886 114 misefFpkkevGtAlglaa 132
                 ++se Fp ++ G Alg + 
  MMETSP1061-20121228|8509_1 625 LTSEIFPTEIRGRALGCSS 643
                 5788888888888888654 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   3.7   2.1e-05    0.0061      13     162 ..     147     298 ..     135     318 .. 0.80
   2 ?    1.7   0.4      0.06        18     162     214 ..     530     582 ..     528     588 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.1e-05
   TIGR00711  13 mavldstivnvalptlaadlgaslsevqWviTsymvanaivIpltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwii...eayeWrwiFlin 162
                 +   d+  ++ +lp+l++ +  + ++ + v+    v  a    + g l +r+g++   +++ ++F+ ++l   +a++  +++ +R + g+g ++  +   + l + +p e rg  + +    ++++  l   ++G++    +a eWr++F + 
  MMETSP1061-20121228|8509_1 147 LFGYDMGAISGTLPQLTTTFDLNDNQKELVVSILYVGGAFGACIGGSLCDRIGRKVTIMLTDFIFVFGALWLYLAPSYAAVVAGRFVVGVGVAVSGVADVTYLRECAPIEWRGAIVSVNEACISLGFLLAY-IAGYVYadeGAGEWRIVFGVA 298
                 5556667777889999999999999999999999999999***************************************************999999999999999*******999886666666655543.355654222567899999664 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.06
   TIGR00711 162 nvpiGiivvvvallilkeekekaskkldflgllllsvglasllivlsegkeeg 214
                  v+iG++ + v++l++ + ++  +++l ++g  l+ +gl +l +    +++ g
  MMETSP1061-20121228|8509_1 530 MVIIGVVKFFVTVLVIWRIEYIGRRSLLIIGNGLIALGLLALVVAFGGSNNAG 582
                 599*******************************9999999888777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (747 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.53u 0.13s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 2347.52
//
Query:       MMETSP1061-20121228|8519_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1851.85
//
Query:       MMETSP1061-20121228|8517_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-54  181.5   0.3    5.3e-54  181.3   0.2    1.0  1  TIGR00419 tim: triose-phosphate isomerase
  ------ inclusion threshold ------
      0.019   11.8   0.5       0.22    8.3   0.1    2.1  2  TIGR00465 ilvC: ketol-acid reductoisomerase


Domain annotation for each model (and alignments):
>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   0.2   2.6e-57   5.3e-54       1     226 [.      43     277 ..      43     279 .. 0.96

  Alignments for each domain:
  == domain 1    score: 181.3 bits;  conditional E-value: 2.6e-57
   TIGR00419   1 lviinfKlnesvgkvelevak.laeevaseagvevavappfvdldvvkdeveseiqvaAqnvdavksGaftGeisAemlkdlGakgvligHsErRsllkeadeliekkvarlkelglksvvCvgetleere.......aartinnvattaaaaAlepdvvAvEPveliGtGkpvskAeaevveksvrdhlkk.vskevaesvrvlyGasvtaaedaelaaqldvdGvLlasavlk 226
                 ++ +n+Kln  ++  +  +a+ +a+ + + +   v++ +pf +l++vkd v  ++ v+A  v a  +GaftG +s   lk +G+++ l gHsErR +  e+de i+++   l e g+++v+C+getlee e       +  +++  ++  +a  ++++ +A+EPv++iGtGk++++  a+ v++s+r+ l k    evae +r+lyG+sv+  +   l aq+d+dG L+++a+l 
  MMETSP1061-20121228|8517_1  43 FITGNWKLNPQTKAEAVDLARgIADSIGEDCPADVGLFVPFPFLETVKDIVGDKLIVGAEMVTAEMKGAFTGGVSPVQLKSIGIEWALAGHSERRVINGESDEDINAQCKILVENGMNVVLCIGETLEEFEkslvdavCEVQLKKGLEGIGAEQMSSVTIAYEPVWAIGTGKVATPEIAQSVHESIRQILDKmYGSEVAEATRILYGGSVSPDSVDGLLAQPDIDGGLVGGASLD 277
                 689****999998888888754999*********************************************************************************************************999999999999999999999999************************************997899************************************985 PP

>> TIGR00465  ilvC: ketol-acid reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0    0.0099        20     109     161 ..      20      72 ..       8     117 .. 0.76
   2 ?    8.3   0.1   0.00011      0.22     181     231 ..     135     186 ..     126     245 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.0099
   TIGR00465 109 vdvvlvAPKgpGalvReeykegrGvpsliAveqdvtgeakeiAlayAkaiGga 161
                 v+  +vAP   G +  e   + + + +   ++++++ ea + A+++A +iG  
  MMETSP1061-20121228|8517_1  20 VNRQFVAPSVVGPTSTELAARKAFITGNWKLNPQTKAEAVDLARGIADSIGED 72 
                 56668999999999999999999999999999******************974 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00011
   TIGR00465 181 EqavLcGglealikaafdtLveaGyqpelAyfeivhel.klivdllkekGle 231
                 E+ v+ G  ++ i+a+ + Lve+G +  l   e+++e+ k++vd++ e  l+
  MMETSP1061-20121228|8517_1 135 ERRVINGESDEDINAQCKILVENGMNVVLCIGETLEEFeKSLVDAVCEVQLK 186
                 899999999****************************999999998753332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1293.49
//
Query:       MMETSP1061-20121228|8522_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 425.30
//
Query:       MMETSP1061-20121228|8523_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 626.95
//
Query:       MMETSP1061-20121228|8521_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-08   31.4   1.7    5.9e-06   23.3   1.2    2.3  1  TIGR00769 AAA: ADP/ATP carrier protein family


Domain annotation for each model (and alignments):
>> TIGR00769  AAA: ADP/ATP carrier protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   1.2   1.4e-09   5.9e-06     136     451 ..     266     564 ..     223     580 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.4e-09
   TIGR00769 136 vlaelWgsvvlsllfWgfanqitkideakrfyalfglganvalivsgrvvkyfsklraslsegvdawavslkalmvivvvsgliiillyrwinrnvll.derlkkaalkekk......akpklsakeslkflv.sskyildlallviaygisinlvevvWksklkeqypskneysafmgefstltGvvsvllmlll.gnvlrkygWlvaalvtPlvllltGvaffslilfakkaaslvavlgmtPlllavvvgaiqnvlsksvkyslfdatkemayiPldeeqkvkgkaaidvvaarlGksGGaliqqgllvifgsla.astpyla 451
                 v+ e +  ++ s  fW f   + + +e+ +++a +  +  +a+++ g++v ++s+  + ls ++    + l  l ++ +         y   ++n    ++r+kk ++k+ k         + +++   + l+ + + ++ l   +ia      l++v +   + +  p     + ++g+f  l+ v s++l + +   ++++         tPl+ l  G  f ++             +   P l a+  +    ++ k  +ys      em y+Pld e++  gk  i v + r+Gks  +l  +++  i+g +  +s+ +la
  MMETSP1061-20121228|8521_1 266 VFRESYVQLLTS-QFWSFMASVLTPNESAKWFAPIAGLTSIASVMGGTAVSFLSERLK-LSGTLACTGLALI-LSMLATG------QAYSIAEKNGFSpKPRSKKVNVKKSKqnghkgDEHEGGMISKARNLFkRVPVLKALFCEIIASQSLATLLNVCFVTSVGATIPDDTVRAGWVGNFYALINVFSMTLQFAVlPFLMQHIEPRDLWRFTPLISL--G--FTTFQA-----------FQKNPTLYAISASL---LVMKVSEYSARRMLDEMVYVPLDFESRFLGKEIIGVFGYRFGKSMISLSLSAMTSIMGQFNlQSLSILA 564
                 556666555444.69***9999999998888888888899***********9987655.5554444444332.2222233......3444455554331467777666666622211122233455555555514678888999999999999**********************************9999887765788888888888889998765..3..333323...........33445555544333...34466789999999***********************************99999999998766777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.42
# Mc/sec: 1882.42
//
Query:       MMETSP1061-20121228|8524_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 559.38
//
Query:       MMETSP1061-20121228|8525_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.081    9.0   2.1        0.1    8.7   1.5    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   1.5   2.5e-05       0.1     163     237 ..      20      96 ..      11     115 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 2.5e-05
   TIGR00934 163 rtetkvrtr.tqvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesis.slrfdeskekkks 237
                 ++++++ t  +  ++p  + ++d f++ l++G ++  de+++   dq+++  +++ + ++++s s  ++ +++++++
  MMETSP1061-20121228|8525_1  20 HNHQQNTTAtVSATMPAATPTTDVFEKILYTGVVEWVDEDEDEDEDQDQDPCEEENKDQNEFSsSSSLSANHRNRNR 96 
                 33445555545689999999************999999987777777777777777777777732222222322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1028.42
//
Query:       MMETSP1061-20121228|8528_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 521.36
//
Query:       MMETSP1061-20121228|8530_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 838.13
//
Query:       MMETSP1061-20121228|8529_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1996.34
//
Query:       MMETSP1061-20121228|8531_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1536.35
//
Query:       MMETSP1061-20121228|8533_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-06   24.4   0.0    2.6e-06   24.4   0.0    1.0  1  TIGR01141 hisC: histidinol-phosphate transaminase
    0.00075   16.5   0.0    0.00075   16.5   0.0    1.0  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
  ------ inclusion threshold ------
      0.013   12.3   0.0      0.014   12.3   0.0    1.1  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
      0.021   11.6   0.0      0.021   11.6   0.0    1.0  1  TIGR03947 viomycin_VioD: capreomycidine synthase


Domain annotation for each model (and alignments):
>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   2.6e-09   2.6e-06     191     223 ..      18      50 ..       9      52 .] 0.89

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 2.6e-09
   TIGR01141 191 svlellaeypnlvvlrTlSKafgLAglRvGyai 223
                 + l+   + p+++ + ++SK ++LAg+R+Gy++
  MMETSP1061-20121228|8533_1  18 NPLPTFPDDPHVIHVFSFSKGYALAGYRCGYLV 50 
                 678889999**********************98 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   7.3e-07   0.00075     185     208 ..      27      50 ..      10      52 .] 0.84

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 7.3e-07
   TIGR01140 185 pglvVlrSltKffglaGlRlGfvv 208
                 p+++ + S+ K ++laG R+G++v
  MMETSP1061-20121228|8533_1  27 PHVIHVFSFSKGYALAGYRCGYLV 50 
                 7889999***************98 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.3e-05     0.014     208     230 ..      28      50 ..      18      52 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.3e-05
   TIGR03539 208 gllavhslskrsnlagyragfva 230
                  ++ v+s+sk   lagyr g+++
  MMETSP1061-20121228|8533_1  28 HVIHVFSFSKGYALAGYRCGYLV 50 
                 6899*****************87 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0     2e-05     0.021     189     225 ..      15      50 ..       8      52 .] 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2e-05
   TIGR03947 189 ydaeplpepsaaadrvisfgtlskafGlpGlrvGWcv 225
                 y+++plp    +  +vi +  +sk + l+G r G+ v
  MMETSP1061-20121228|8533_1  15 YETNPLPTFP-DDPHVIHVFSFSKGYALAGYRCGYLV 50 
                 5666666543.4569999****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|8534_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 591.08
//
Query:       MMETSP1061-20121228|8537_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-14   50.8   0.0    1.9e-14   50.8   0.0    1.0  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
      4e-09   32.5   0.0    4.5e-09   32.3   0.0    1.0  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA


Domain annotation for each model (and alignments):
>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0     9e-18   1.9e-14     208     278 ..       9      83 ..       1      84 [] 0.88

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 9e-18
   TIGR01970 208 eesgsvLvfLPGqaeirrveeaLae...rldasev.elcPLyGeleleaqdraikpaaaGrrkvvLatniaetsl 278
                 +++g +LvfLPGq+ei+ +++ L++    l++ +v +++ L+  ++  +qdr+ + a +G  k+vLatniaetsl
  MMETSP1061-20121228|8537_1   9 RTTGAILVFLPGQGEIEALAACLSDpgtILGNKDVcSVLRLHSSVPRTEQDRVFRRARTGTVKIVLATNIAETSL 83 
                 689********************98443577777647999**********************************8 PP

>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   2.2e-12   4.5e-09     279     345 ..      10      83 ..       3      84 .] 0.79

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 2.2e-12
   TIGR01967 279 ekGdiliflpGereirdaaealrkr.....klrhveilPlyarlsaeeqqrvfqp.hsg.rrivlatnvaetsl 345
                 ++G il+flpG+ ei   a  l        +     +l l++ +  +eq+rvf+   +g  +ivlatn+aetsl
  MMETSP1061-20121228|8537_1  10 TTGAILVFLPGQGEIEALAACLSDPgtilgNKDVCSVLRLHSSVPRTEQDRVFRRaRTGtVKIVLATNIAETSL 83 
                 459**************999998642222133445899***************852455269***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|8535_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1220.90
//
Query:       MMETSP1061-20121228|8536_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 390.47
//
Query:       MMETSP1061-20121228|8540_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 818.33
//
Query:       MMETSP1061-20121228|8538_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1511.88
//
Query:       MMETSP1061-20121228|8539_1  [L=867]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-10   36.3   0.0    6.1e-10   35.4   0.0    1.3  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0037   14.6   0.0     0.0091   13.3   0.0    1.7  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0     3e-13   6.1e-10      84     186 ..     464     588 ..     455     625 .. 0.70

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 3e-13
   TIGR03903  84 LmlqvLDalaaahdaGvvhRDLkPqnimv....saadvesh......akvLDFGi.......gaLlpgvedadeatltrt.....tevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                 +  qv  ala  h++ vv+RDLkPqni      s++d e++       k++DFG+       g++lp  +d  +   t t     t  +G+  Y aPe     p   + D+Y+W ++  e L   
  MMETSP1061-20121228|8539_1 464 ICRQVAGALAYIHSKNVVYRDLKPQNIGFaidkSVSDSEENdgsnvvVKLMDFGLarelpstGTVLPKEQDLSRSPKTETsvfdmTGTVGTLRYMAPEVCLHLPYGLECDIYSWSIVAHEILSQA 588
                 5679**********************965222233443332222222799****955555556788888887766555542222267899***************************99999754 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   4.4e-06    0.0091      88     124 ..     459     493 ..     417     527 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.4e-06
   TIGR03724  88 leekelellkevGelvgklHkagivhgDlttsNiivk 124
                 +e+  l ++++v+ +++ +H++++v+ Dl ++Ni + 
  MMETSP1061-20121228|8539_1 459 IEQ--LTICRQVAGALAYIHSKNVVYRDLKPQNIGFA 493
                 333..499*************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.34
# Mc/sec: 3365.72
//
Query:       MMETSP1061-20121228|8543_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.64
# Mc/sec: 121.68
//
Query:       MMETSP1061-20121228|8542_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00094   16.2   0.0     0.0012   15.8   0.0    1.3  1  TIGR03674 fen_arch: flap structure-specific endonuclease


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.9e-07    0.0012     221     257 ..      37      73 ..      11     130 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.9e-07
   TIGR03674 221 itreqLidiailvGTDynegvkgiGpkkalklikelg 257
                 +  +  ++  il G Dy + ++giG+++a+kl+ e  
  MMETSP1061-20121228|8542_1  37 VGVRLFVQGCILSGCDYRKNIEGIGTTNAFKLVSENA 73 
                 5556678889***********************9853 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1241.90
//
Query:       MMETSP1061-20121228|8544_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.30
# Mc/sec: 2978.55
//
Query:       MMETSP1061-20121228|8551_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|8547_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 2006.23
//
Query:       MMETSP1061-20121228|8550_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 2163.47
//
Query:       MMETSP1061-20121228|8549_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 2369.20
//
Query:       MMETSP1061-20121228|8552_1  [L=1381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 4339.93
//
Query:       MMETSP1061-20121228|8553_1  [L=1184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.1e-237  786.6  16.3   1.1e-103  345.9   6.8    5.1  4  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   2.2e-113  377.5   9.8    3.4e-51  171.8   1.5    3.8  3  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   8.7e-109  362.6   3.4    2.8e-51  172.4   0.1    3.3  3  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    7.9e-85  283.3   6.5    1.8e-50  169.5   0.9    2.6  2  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    4.6e-80  267.2  11.2    2.8e-37  126.1   2.1    6.0  6  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    1.5e-76  255.6   8.4    1.1e-29  100.4   0.0    4.1  4  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    4.1e-75  251.2   9.0    4.5e-42  142.0   3.2    3.1  3  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    2.1e-61  205.5   0.0    1.4e-42  143.1   0.0    4.0  2  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    6.2e-61  204.7  14.1      1e-30  104.9   2.8    3.2  3  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    6.3e-59  197.5   5.2    1.7e-27   93.5   1.7    3.4  3  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
      1e-45  154.2  15.8    4.6e-20   69.6   0.5    4.2  3  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    9.8e-43  144.6  17.1    1.7e-17   61.3   6.2    4.0  3  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    6.5e-34  114.6   1.9    8.1e-21   71.3   0.0    4.1  4  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    3.2e-22   76.2  18.8    3.2e-14   49.8   1.2    3.9  3  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    0.00017   19.1   0.4    0.00049   17.6   0.2    1.8  1  TIGR00099 Cof-subfamily: Cof-like hydrolase
     0.0005   17.6   0.2     0.0014   16.1   0.1    1.8  1  TIGR00338 serB: phosphoserine phosphatase SerB
     0.0035   15.3   0.7      0.099   10.5   0.1    2.6  2  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB


Domain annotation for each model (and alignments):
>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  326.3   1.3  3.7e-100     9e-98      48     388 ..     165     516 ..     128     525 .. 0.87
   2 !   99.1   0.0   1.8e-31   4.3e-29     393     586 ..     548     772 ..     536     789 .. 0.76
   3 !   11.8   0.0   4.1e-05      0.01     599     620 ..     824     845 ..     806     855 .. 0.81
   4 !  345.9   6.8  4.4e-106  1.1e-103     625     878 ..     874    1148 ..     864    1151 .. 0.94

  Alignments for each domain:
  == domain 1    score: 326.3 bits;  conditional E-value: 3.7e-100
   TIGR01517  48 lktdlneGvssselerRekvygknelpekkeksflqlvwealsDktlilLsvaavvslvvgeekee.ketgwieGvailvsvllvvlvtavnDykkelqfreLnekk.eekkikviRggqeiqisiadvvvGDivslstGdv..vpaDgvlis.GlklkiDessltGesdpikkgkek.LlsGtkvlegsgrmlvtavGvnsvtGkll..........telreageeeplqlkLselasligkfGlgsavllllvlvlryviekivedteekaktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvkgyigeeav 388
                 l++  ++G+ + e++ R++v+g+n ++ek+ +sfl l wea++D +l++L++  +++lvv+ +++   +  w eG+ail++vllvvl+ta  Dy k+  f+ L +   e+++ +viR+g+++++   d+vvGDi+ ++   +  +paD+ l+    +lk+Des ltGes+p+ k++ + +lsGt+ ++gsg+m+v avG+nsv Gk+           +el +++e++pl +kL+++a++ig +G+++a + ++v ++  +       ++  +++ll+++++a+t++ vavPegLPLavtlaLa++ ++++k++nlvR+L+aCetmG+at+iC+DktGtLt n+ms    y++ + +
  MMETSP1061-20121228|8553_1 165 LRSCPEQGIDKDEVDFRREVFGSNAIAEKPMESFLALCWEAVQDFVLVMLIILGIIALVVEISDKGpCGSCWAEGTAILLTVLLVVLLTASIDYAKQFAFQRLARSLfESNTKQVIRNGKQMTVIDDDIVVGDILCVNSHSLasIPADCALLGpAADLKMDESTLTGESEPVAKKPGDvILSGTNAIQGSGNMVVIAVGINSVAGKIRaqvyessdheDELGDSDEDSPLFTKLDKIAKQIGIAGMVAACFSFIVSCIIGL-----GVEKDPIRNLLNYLVTAITVLAVAVPEGLPLAVTLALAFSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTANKMSARALYVAGKDM 516
                 5677899****************************************************997665516899*********************************7651666779**********9*********99987754349****99862679**************9887755278*************************962222222222345667899***************************9987543.....344556899***********************************************************************99999887765 PP

  == domain 2    score: 99.1 bits;  conditional E-value: 1.8e-31
   TIGR01517 393 veaivlnssaeeekdkgkeefiGsktetalLelvklllkdvkekrkeek...vv..........kiypfeserkkmsvvvkhs.eglRlfikGaseivlkkcekkldsngeakeis.ekkdevedeienlasealRtislaykd..............elpekd.....spnkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgilta 586
                 +++ + ++++e +kd+  e   G++te alL lv++l+ ++++ r++++    +          k+y f+s rk+ms  v  + +  R+++kGa+e+vl +c+k++  ++e+k+++ e  +e+ ++ +  a +++Rti+lay d              + p  d     + +++lv +++vGi+dP+r +v++a+++c  aGi vRmvtGDn sta +ia ++gil  
  MMETSP1061-20121228|8553_1 548 INS-MNETTLELDKDGAVEGSAGNPTEVALLVLVHDLGFNYEHIRNSTRgrsSYgeqadylsdgKLYGFSSGRKMMSWAVPLEnGEHRIYTKGAQEVVLSRCNKYIADGNEIKDLTpEGVEEFMKHSQIYARRGMRTIALAYGDlpagtdlekisstiHNP--DgsdafQAESNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGILRD 772
                 333.34567788999999******************998887766544311211222222344489***********9887651568***************************973567899999999*************8833333222111111111..11112234689999************************************************964 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 4.1e-05
   TIGR01517 599 dkilpklrvlaRssPlDkqlLv 620
                 dki+p lrvlaRssP Dk +L 
  MMETSP1061-20121228|8553_1 824 DKIWPFLRVLARSSPDDKLTLA 845
                 68****************9996 PP

  == domain 4    score: 345.9 bits;  conditional E-value: 4.4e-106
   TIGR01517  625 lgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvnvvavilafvgalisstspLtavqlLWvnlimDtLaaLaLateePteelldRkPigrkaplisrsmwknilgqaayqlvvlfilefaGeelf..................tivfntfvllqlfnelnaRkle.elnvfeglfknaifvaivlitlavqviivefgGaalsvvs..lsieqWllcvllgalslilgvllrl 878 
                   ++v+a+tGDGtnDaPaLk+ad+Gfamgi+Gt++ak+a+DiilldDnfasiv a++WGR++y s++kflqfqLtvn++av+ a vga+ s+ spL a+qlLWvn++mD La+LaLa e+P eell+++P  r+  +i++ mw n+lgqa yq+ v+++l+faG+++f                  t++fn+fv++qlfne+n Rkl+ e nvf+g+  n if++i+ +t ++qv+iv+fgG+al v++  ls + W+l++l+ga sl++ +l+++
  MMETSP1061-20121228|8553_1  874 DRQVIAMTGDGTNDAPALKRADIGFAMGISGTQIAKDAADIILLDDNFASIVTAAKWGRNIYASLQKFLQFQLTVNISAVTTAIVGACYSQYSPLAAIQLLWVNILMDSLASLALASEPPVEELLKKPPVNRTRHMITKHMWANMLGQASYQICVVMTLLFAGPKMFdlepghvvedrkensvhyTLIFNAFVWMQLFNEVNCRKLKgECNVFKGILDNPIFCSILFCTSVLQVLIVQFGGNALHVADggLSGRFWILSLLVGAGSLLVQQLINV 1148
                  689****************************************************************************************************************************************************************998766666666666666666699*******************7479***********************************99655999****************999875 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8   1.5   1.4e-53   3.4e-51      18     485 ..     167     690 ..     150     697 .. 0.73
   2 !   38.0   0.0   3.9e-13   9.3e-11     483     569 ..     713     799 ..     710     806 .. 0.85
   3 !  169.8   0.4   5.8e-53   1.4e-50     588     810 ..     876    1110 ..     805    1145 .. 0.84

  Alignments for each domain:
  == domain 1    score: 171.8 bits;  conditional E-value: 1.4e-53
   TIGR01522  18 tdlenGlsssqevsrrrklhGsnelkveeeesllkkflsqfvkdplillllasavvsvllgnid.........davsitlailivvtvgfvqeyrsekslealnk.lv.paechliraGkeehvlasklvpGdlvelsvG..drvpadlrive.avdlsidesnltGettpvkksseaiealaersniaymGtlvreGkgkGivvgtGsntefGa....vfemmqeie.....kpktplqksmdklGkdlslvsfivig....vivlvGllqG....kdwlemftisvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtkiytvdklaalslktvav....ekil.......kvgal.....cnnakvkneaasll....gkptdvaliellekfgl..edlretvk.rva..e..........vpfsserkymavkvl.tdskkivfvkGateqvleyctsylkkdGkteklteeqkekiqeeaaemaseGlrvlalaskt 485
                 +  e+G+  + ev  rr+++Gsn ++ +  es+l    +   +d ++++l+   +++++++  d         +  +i l++l+vv ++   +y  + +++ l++ l   +  ++ir+Gk+ +v+  ++v Gd+++++      +pad+ ++  a dl++des+ltGe++pv k+            +   Gt   +G g+ +v++ G n+  G+    v+e  ++++        +pl + +dk+ k++ +  ++  +    v +++Gl       +++l+ +  ++++   a+peGlp+ vt++la+   rm+k++ +vrkl + et+G+   ic+dktGtlt n+m+   +y+++k  ++  ++ ++    ++ l        +g +      n+++++ +++  +    g+pt+val+ l++ +g+  e +r++++ r +  e          + fss rk+m+ +v  ++ ++ ++ kGa+e+vl+ c++y  +  + ++lt e  e++ ++ +  a  G+r +ala++ 
  MMETSP1061-20121228|8553_1 167 SCPEQGID-KDEVDFRREVFGSNAIAEKPMESFLALCWEAV-QDFVLVMLIILGIIALVVEISDkgpcgscwaEGTAILLTVLLVVLLTASIDYAKQFAFQRLARsLFeSNTKQVIRNGKQMTVIDDDIVVGDILCVNSHslASIPADCALLGpAADLKMDESTLTGESEPVAKKPGD---------VILSGTNAIQGSGNMVVIAVGINSVAGKiraqVYESSDHEDelgdsDEDSPLFTKLDKIAKQIGIAGMVAACfsfiVSCIIGLGVEkdpiRNLLNYLVTAITVLAVAVPEGLPLAVTLALAFSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTANKMSARALYVAGKDMTVDDHKRTLgdfvREHLldlsileMIGKIisinsMNETTLELDKDGAVegsaGNPTEVALLVLVHDLGFnyEHIRNSTRgRSSygEqadylsdgklYGFSSGRKMMSWAVPlENGEHRIYTKGAQEVVLSRCNKYIADGNEIKDLTPEGVEEFMKHSQIYARRGMRTIALAYGD 690
                 55678888.99***************999999877655544.444444444444555554443311111121267899999********9************9873441345689*******************9987652268******995499****************998654.........4566888889**************99972222566665543122214679*************98766554411112344444333234478999999999888889*************************************************************998776665444332111111111111111233321111157777766655444333389********999877622567765431221111222322333368*********999615567889*****************9977799****************************975 PP

  == domain 2    score: 38.0 bits;  conditional E-value: 3.9e-13
   TIGR01522 483 sktekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavksskeGekldelddqqlsevvdkvavfa 569
                  + e++lv  Gl+G+ dp r +v+ a+e    +G+ v m+tGd  +ta sia + G+      +    + ++++  ++v+ +  vf 
  MMETSP1061-20121228|8553_1 713 FQAESNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGILRDFHFKEGTTERISSNLKENVLLTGDVFR 799
                 57899***************************************************9876665555667777777777777777775 PP

  == domain 3    score: 169.8 bits;  conditional E-value: 5.8e-53
   TIGR01522  588 dvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnniknfitfqlstsvaalslvalatvlklenplnamqilwinilmdGppaqslGvepvdkdvlkkpprkrkdkiltkdllkkvlvsav..iivvgtllvfvkelqd....gvvtar.....dttmtftcfvffdmfnalacrset..ksvfeiGlfsnkmflyavgasllGqllvv 810 
                  +v+amtGdG ndapalk adiG amG +Gt++ak+aad+il dd+fa+i++a + G+ i+  ++ f++fql+  ++a++   + + ++   pl a+q+lw+nilmd   + +l  ep  +++lkkpp +r+ +++tk++  ++l  a   i vv tll    ++ d     vv+ r       t+ f  fv++++fn + cr+      vf+ G++ n +f+  +  + + q+l+v
  MMETSP1061-20121228|8553_1  876 QVIAMTGDGTNDAPALKRADIGFAMGISGTQIAKDAADIILLDDNFASIVTAAKWGRNIYASLQKFLQFQLTVNISAVTTAIVGACYSQYSPLAAIQLLWVNILMDSLASLALASEPPVEELLKKPPVNRTRHMITKHMWANMLGQASyqICVVMTLLFAGPKMFDlepgHVVEDRkensvHYTLIFNAFVWMQLFNEVNCRKLKgeCNVFK-GILDNPIFCSILFCTSVLQVLIV 1110
                  79*********************************************************************************************************************************************9766411445555555445555433324566662222246999****************8541146776.88888888876655555555555 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  172.4   0.1   1.2e-53   2.8e-51      53     449 ..     266     688 ..     234     697 .. 0.74
   2 !   56.6   0.0   1.1e-18   2.7e-16     448     513 ..     712     777 ..     710     790 .. 0.95
   3 !  132.4   0.1   1.4e-41   3.4e-39     543     683 ..     875    1017 ..     860    1038 .. 0.92

  Alignments for each domain:
  == domain 1    score: 172.4 bits;  conditional E-value: 1.2e-53
   TIGR01116  53 kaiealkeleseealvlrdark....akdlvpGdivelavG..dkvpadvrlle.lkslkvdqsiltGesvsvekktesvkkekaavqdkknmlfsGtlvvaGkalgvvvrtGvnteiGkirkevkeae.........eektPlkkkldefGekl..skviali......cilvwvinikk.flaiyyfkiavalavaaiPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkmsvaklvalekefkvegttyepveakikd......leelakiaal..cndsklavdkkkve..kvGeateaalkvlveklglsaaknkkslksrealacn.slikkkatlefsrdrksmsvlv....ksnklfvkGapeellersthillk.gsavPltekakqkilaslkelssealrclalav 449
                 +   +l  +es++ +v+r++++      d+v+Gdi+ ++    + +pad  ll     lk+d+s ltGes++v kk                ++ sGt+ ++G    vv++ G+n+  Gkir++v e++         +e++Pl +kld   +++  ++++a        ci+   ++ +   + + y+  a+++   a+PeGlP  +t  la+ +r+m+k++ lvrkl   et+Gc+t ic+dktGtlt+nkms   l +  k+ +v++ + +  + + ++      le++ ki+++   n+++l +dk        G++te+al vlv  lg++  +  +s++ r+  + + ++     +  fs  rk+ms  v     +++++ kGa e +l+r+ +  ++ +++  lt++ +++ + + + ++  ++r++ala+
  MMETSP1061-20121228|8553_1 266 RLARSL--FESNTKQVIRNGKQmtviDDDIVVGDILCVNSHslASIPADCALLGpAADLKMDESTLTGESEPVAKKPG-------------DVILSGTNAIQGSGNMVVIAVGINSVAGKIRAQVYESSdhedelgdsDEDSPLFTKLDKIAKQIgiAGMVAACfsfivsCIIGLGVEKDPiRNLLNYLVTAITVLAVAVPEGLPLAVTLALAFSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTANKMSARALYVAGKDMTVDDHKRTLGDFVREHlldlsiLEMIGKIISInsMNETTLELDKDGAVegSAGNPTEVALLVLVHDLGFNYEHIRNSTRGRSSYGEQaDYLSDGKLYGFSSGRKMMSWAVplenGEHRIYTKGAQEVVLSRCNKYIADgNEIKDLTPEGVEEFMKHSQIYARRGMRTIALAY 688
                 333333..456666788887752222579******7776542289*****987626679**************99754.............357899999999999999999999999999999976541111122226789********9998622444443211112233322222222246788999999988889**********************************************************************9887665544443111222688999988733588989888765431368****************998888888777777665505566667778*********88733334799**************986665156789**************************98 PP

  == domain 2    score: 56.6 bits;  conditional E-value: 1.1e-18
   TIGR01116 448 avkeesklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGilssftGke 513
                 a++ es+l+ +G+vg++dP r+ev daie+c  aGi v ++tGdn  ta +ia + Gil  f  ke
  MMETSP1061-20121228|8553_1 712 AFQAESNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGILRDFHFKE 777
                 799*********************************************************998776 PP

  == domain 3    score: 132.4 bits;  conditional E-value: 1.4e-41
   TIGR01116  543 dqivamtGdGvndaPalkkadiGiamG.sGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifltaalg.iealipvqllWvnlvtdGlPatalgfnppdkdilkkpprkedeplitgwlflr 683 
                   q++amtGdG ndaPalk+adiG amG sGt++ak+a+d++l ddnfa+iv+a + Gr iy  +++f+++ ++ ni  v + ++ a+ +    l+++qllWvn++ d l + al+ +pp +++lkkpp ++   +it++++  
  MMETSP1061-20121228|8553_1  875 RQVIAMTGDGTNDAPALKRADIGFAMGiSGTQIAKDAADIILLDDNFASIVTAAKWGRNIYASLQKFLQFQLTVNISAVTTAIVGACYSqYSPLAAIQLLWVNILMDSLASLALASEPPVEELLKKPPVNRTRHMITKHMWAN 1017
                  69*************************99**************************************************999999888626789*******************************************998765 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.5   0.9   7.6e-53   1.8e-50     105     679 ..     241     848 ..     170     862 .. 0.71
   2 !  115.3   0.2   1.8e-36   4.4e-34     684     825 ..     876    1017 ..     869    1036 .. 0.90

  Alignments for each domain:
  == domain 1    score: 169.5 bits;  conditional E-value: 7.6e-53
   TIGR01106 105 ylgvvlsavvivtgvfsyyqeaksskilesfknlvpqqalvirdgeklsinaeevvvgdlvevkgg..dripadlriis.akglkvdnssltgesepqtrspefthenpletrniaffstncvegtargivvstgdrtvlgriasl...as......glesgktpiaieiehfidiitgvavflgvsf.filsliley........tfleavifligiivanvpegllatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmtvahlwfdnqiheadttedqsgvsfdkssetwkalsriatlcnravfka.gqenvpvlkr....avagdasesallkfielalgsvkelre....rykkvveipfnstnk.yqlsihekeda.....sepryllvmkgaperilercssilikgke.qpldeelkeafqnaylelgglgervlgfchlylpe....eqypeg.fkfdvddvnfpvenlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiise...gnetvediaarlnipv...eqvnkrdakacvv..hgsdlk.dltseqldeilkehteivfartspqqkliivegc 679
                  + + + +vv++t  + y +++   ++  s+ +   +   vir+g+++++  +++vvgd++ v+      ipad  ++  a +lk+d+s+ltgesep ++ p           ++ +  tn+++g  + +v+++g ++v g+i +    +s      g   + +p+ ++++++ + i g+a ++ + f fi+s i++         ++l+ ++  i+++   vpegl  +vt++l+++++r+++   lv++l+a et+g +++ic+dktgtlt n+m+   l++  + ++ d  +   g   d   e    ls +  + +   +++ ++  + + k       ag+ +e all ++     +  ++r+    r +   +  + s  k y +s  +k  +     ++  + +  kga e +l rc+  + +g+e + l  e  e f +        g r + ++   lp+    e+  ++ ++ d  d   + +nl+ vgl+ + dp r  vpda+  c  agi v mvtgd p ta +ia   gi+ +    + t e i+  l+  v    +v ++    +v   +g+  k ++++  +d+i       v+ar+sp++kl +  g 
  MMETSP1061-20121228|8553_1 241 AILLTVLLVVLLTASIDYAKQFAFQRLARSLFES--NTKQVIRNGKQMTVIDDDIVVGDILCVNSHslASIPADCALLGpAADLKMDESTLTGESEPVAKKPG----------DVILSGTNAIQGSGNMVVIAVGINSVAGKIRAQvyeSSdhedelGDSDEDSPLFTKLDKIAKQI-GIAGMVAACFsFIVSCIIGLgvekdpirNLLNYLVTAITVLAVAVPEGLPLAVTLALAFSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTANKMSARALYVAGKDMTVDDHKRTLG---DFVREHLLDLSILEMIGKIISINSmNETTLELDKDgaveGSAGNPTEVALLVLVHDLGFNYEHIRNstrgRSSYGEQADYLSDGKlYGFSSGRKMMSwavplENGEHRIYTKGAQEVVLSRCNKYIADGNEiKDLTPEGVEEFMKHSQIYARRGMRTIALAYGDLPAgtdlEKISSTiHNPDGSDAFQAESNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGILRDfhfKEGTTERISSNLKENVlltGDVFRKRVYRTVAgeDGATGKlEFDQAAFDKIWPFL--RVLARSSPDDKLTLAHGL 848
                 333444568999*************999997664..55569*******************9887652268******996489***************998774..........688999************************7641222322222234457899999999887766.6666666666578888876522222222567888888999999**************************************************************9888776665554444...44444444554444444444444313333444443211045678899***99987665566666551111444444566777666466665544332112225668999********************98457988888888877777777777776666666655111234444413445556666788****************************************************9984434679999999987555222456665555444322344333245555666665443..378999999998887765 PP

  == domain 2    score: 115.3 bits;  conditional E-value: 1.8e-36
   TIGR01106  684 aivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnipeitpflifiivniplplgtvtilcidlgtdlvpaislayekaesdimkrkprnpkkdklvnerlis 825 
                   ++a+tgdg nd+palk+adig amgi+g++++k+aad+illddnfasivt  + gr i+  l+k + + lt ni+ +t  ++    +   pl ++ +l +++  d + +++la e    +++k+ p n+++  +  +  + 
  MMETSP1061-20121228|8553_1  876 QVIAMTGDGTNDAPALKRADIGFAMGISGTQIAKDAADIILLDDNFASIVTAAKWGRNIYASLQKFLQFQLTVNISAVTTAIVGACYSQYSPLAAIQLLWVNILMDSLASLALASEPPVEELLKKPPVNRTRHMITKHMWAN 1017
                  589****************************************************************************************************************************999887665544333 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.1   2.1   1.2e-39   2.8e-37       2     257 ..     242     534 ..     241     554 .. 0.79
   2 !    7.2   0.0    0.0013      0.32     259     297 ..     613     654 ..     608     666 .. 0.81
   3 ?   -0.6   0.0      0.31        75     289     315 ..     664     690 ..     659     700 .. 0.84
   4 !   48.7   0.0   3.3e-16     8e-14     313     366 ..     717     770 ..     695     796 .. 0.87
   5 ?   -3.9   0.0         3   7.2e+02     364     381 ..     831     848 ..     830     851 .. 0.81
   6 !   79.8   1.1   1.2e-25     3e-23     385     473 ..     875     969 ..     867     974 .. 0.93

  Alignments for each domain:
  == domain 1    score: 126.1 bits;  conditional E-value: 1.2e-39
   TIGR01494   2 ililvllfallealakekaedalrslkdkelnskkvtvlregeke.isskdlvvGDivlvkkg..ekvpaDgvll..sgsaevdessLtGEsnpvekk..eavfagtinfegtlklkv.........skiavvvktgs..........ektplqrkldklalifllallllallvfll.vlie.......lktflkiilralillviaiPiaLpvavtialavgdkrla...ilvrslnaleelgkvdvilsDKTGTLTenkmelkkvviggeyqsgspdekalvksakkilk 257
                 il++vll++ll a ++++++ a+++l+++  +s++ +v+r+g+++ + ++d+vvGDi+ v++    ++paD+ ll  + +++ des LtGEs+pv kk  + + +gt+  +g+ +++v          ki + v+++s          e +pl++kldk+a  + +a +++a + f++  +i+       ++++l+++++a+++l +a+P++Lp+avt+ala++++r+     lvr+lna+e++g+ ++i++DKTGTLT nkm+ ++++++g+  + +  ++ l ++++++l 
  MMETSP1061-20121228|8553_1 242 ILLTVLLVVLLTASIDYAKQFAFQRLARSLFESNTKQVIRNGKQMtVIDDDIVVGDILCVNSHslASIPADCALLgpAADLKMDESTLTGESEPVAKKpgDVILSGTNAIQGSGNMVViavginsvaGKIRAQVYESSdhedelgdsdEDSPLFTKLDKIAKQIGIAGMVAACFSFIVsCIIGlgvekdpIRNLLNYLVTAITVLAVAVPEGLPLAVTLALAFSSRRMTkehNLVRKLNACETMGCATTICTDKTGTLTANKMSARALYVAGKDMTVDDHKRTLGDFVREHLL 534
                 8899****************************9999999998775267899*********8762268********6657899**************98557789999999998887762222222224566777776522222222225789********9766555555555555540454422222223578889*******************************54449***************************************999999998888888887765 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0013
   TIGR01494 259 lefeserkrmsvivkkpkgk...yvkGapevilervkkleek 297
                 + f+s rk+ms  v  ++g+   y+kGa+ev+l+r++k+ + 
  MMETSP1061-20121228|8553_1 613 YGFSSGRKMMSWAVPLENGEhriYTKGAQEVVLSRCNKYIAD 654
                 679********9997666543349*************99765 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.31
   TIGR01494 289 ervkkleekleelaseglrtlavaske 315
                 e v++++++ + +a++g+rt+a+a+ +
  MMETSP1061-20121228|8553_1 664 EGVEEFMKHSQIYARRGMRTIALAYGD 690
                 56788999****************975 PP

  == domain 4    score: 48.7 bits;  conditional E-value: 3.3e-16
   TIGR01494 313 skeellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglf 366
                 s+   +Gl+++edplr++v+++ie++  agi+v m+TGDn++tA++ia++ g++
  MMETSP1061-20121228|8553_1 717 SNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGIL 770
                 555679*********************************************986 PP

  == domain 5    score: -3.9 bits;  conditional E-value: 3
   TIGR01494 364 glfarvsPeqKaeivell 381
                 +++ar+sP++K+++   l
  MMETSP1061-20121228|8553_1 831 RVLARSSPDDKLTLAHGL 848
                 689********9987655 PP

  == domain 6    score: 79.8 bits;  conditional E-value: 1.2e-25
   TIGR01494 385 gevvamiGDGvNDapALkaAdVGiais......AkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsvlnllltsl 473
                 ++v+am+GDG+NDapALk Ad+G+a++      Ak aadi+llddn++++v++ k+Gr++y +++k+++++l++n+ ++ +++v+++++ + + +
  MMETSP1061-20121228|8553_1 875 RQVIAMTGDGTNDAPALKRADIGFAMGisgtqiAKDAADIILLDDNFASIVTAAKWGRNIYASLQKFLQFQLTVNISAVTTAIVGACYSQYSPLA 969
                 579***********************8888888******************************************************99777655 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.1   6.6e-14   1.6e-11      18     181 ..     164     341 ..     148     387 .. 0.75
   2 !   44.4   0.4     4e-15   9.8e-13     282     377 ..     410     512 ..     372     525 .. 0.75
   3 !   72.6   0.0   1.3e-23     3e-21     444     635 ..     555     773 ..     536     798 .. 0.73
   4 !  100.4   0.0   4.8e-32   1.1e-29     691     866 ..     875    1047 ..     860    1059 .. 0.86

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 6.6e-14
   TIGR01523  18 flgtslt.egltqeeavnrlkevgenrleddskvdakkvllrqvlnamivvlllaailsfat..td.......wieggvisavivlnvlvglvqeykaektmdsl.ktl.aspnahvirsskseaidskdlvpgdvvllkvg..dvvpadlrlve.tknfetdealltgeslpvikdan 181
                 +l  s + +g+ ++e+  r + +g n + +    ++ ++  + v + ++v+l++  i+++ +   d       w eg  i + + l vl+    +y  + +++ l ++l  s +  vir++k  ++   d+v gd++ +       +pad  l+  + +++ de+ ltges pv+k   
  MMETSP1061-20121228|8553_1 164 LL-RSCPeQGIDKDEVDFRREVFGSNAIAEKPMESFLALCWEAVQDFVLVMLIILGIIALVVeiSDkgpcgscWAEGTAILLTVLLVVLLTASIDYAKQFAFQRLaRSLfESNTKQVIRNGKQMTVIDDDIVVGDILCVNSHslASIPADCALLGpAADLKMDESTLTGESEPVAKKPG 341
                 34.4444169******************999988888887777777666666555444443211223344444*******999999999999889988888888744552678889********************9998762257******9963689***************99754 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 4e-15
   TIGR01523 282 ciavllaiivmaaqkfdvdk.......evaiyaislalsiipeslvvvlsitmavgakvmvkrrvivrklealealgavtdicsdktgtltqgkmlarrvwip 377
                 ++a  ++ iv     + v+k       +  + ai++    +pe l   +++++a  ++ m+k + +vrkl+a e++g+ t ic+dktgtlt  km ar +++ 
  MMETSP1061-20121228|8553_1 410 MVAACFSFIVSCIIGLGVEKdpirnllNYLVTAITVLAVAVPEGLPLAVTLALAFSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTANKMSARALYVA 512
                 44444444444444444433111111123467899988899*********************************************************99985 PP

  == domain 3    score: 72.6 bits;  conditional E-value: 1.3e-23
   TIGR01523 444 tvfkddetdewkvkgepteialqvfakkldl..........gkkdllksnefvae...ypfdsevkrmavvyedqqnetytvyakgaverilercsss..ygstlee...pdveliikqveslaaeglrvlala......skvidkddvnit....lnrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptn 635
                 t+  d++       g+pte+al v+ + l +          g+ +  +  +++++   y f s  k m+     +++e + +y+kga e +l+rc  +   g  +++     ve  +k+ +  a  g+r +ala         ++k    i     ++   aes+lv ++lvgi dp r e   a++ ++ agi v m+tgd + ta +ia + gil   
  MMETSP1061-20121228|8553_1 555 TLELDKDGAVEGSAGNPTEVALLVLVHDLGFnyehirnstrGRSSYGEQADYLSDgklYGFSSGRKMMSWAVPLENGE-HRIYTKGAQEVVLSRCNKYiaDGNEIKDltpEGVEEFMKHSQIYARRGMRTIALAygdlpaGTDLEKISSTIHnpdgSDAFQAESNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGILRDF 773
                 5555555555667899****9999887765411222222223334444556665455599999999999888888888.9***************9863357766661114577788888999**********8322222233445444443111144567*******************************************************9873 PP

  == domain 4    score: 100.4 bits;  conditional E-value: 4.8e-32
   TIGR01523  691 kkfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfvlqllvenvaevlllvvglvfrdevgksvfplspvevlwiivvtssfpamglglekaapdlmerlphdskvgiftkelivdtlvygii.ltvvslasfvv.ilyginsgrl 866 
                  ++ +amtgdg nd+p+lk+a++g amgi g+++ak+a+di+l ddnfasi+ a + gr ++  +qkf+   l+ n++ v   +vg ++ +       pl+ +++lw++++  s+ ++ l  e    +l++++p +    ++tk++  ++l    + ++vv  + f++  ++ ++ g++
  MMETSP1061-20121228|8553_1  875 RQVIAMTGDGTNDAPALKRADIGFAMGISGTQIAKDAADIILLDDNFASIVTAAKWGRNIYASLQKFLQFQLTVNISAVTTAIVGACYSQ-----YSPLAAIQLLWVNILMDSLASLALASEPPVEELLKKPPVNRTRHMITKHMWANMLGQASYqICVVMTLLFAGpKMFDLEPGHV 1047
                  5789*****************************************************************9***************99865.....45***************************************999999999999886543313333333343325666666655 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.0   3.2   1.9e-44   4.5e-42       1     318 [.     172     520 ..     172     550 .. 0.79
   2 !   39.9   0.0   1.4e-13   3.4e-11     359     482 ..     613     770 ..     592     795 .. 0.83
   3 !   69.6   0.3   1.4e-22   3.5e-20     535     646 ..     876     990 ..     870    1064 .. 0.86

  Alignments for each domain:
  == domain 1    score: 142.0 bits;  conditional E-value: 1.9e-44
   TIGR01647   1 GLsseeakkrlkkyGpneleekkeskllkFlsflwnPls.wvle...iAaiiaialen.........weDfviila....llllnatigfieeskAgnaveaLkkslapkakvlRdgkwqeleakelvpGDvvalklGdi..vpaDvklve.gdklkvDqaaltGEslpvekklgdiaysgsvvkkGEveavvvatGvntffGkaakLveeaek...es..........ghlqkilskigavlivlilvlvliellvellkrkeslreslqfal...vllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideelivkeeldked 318
                 G+ ++e++ r++ +G n++ ek    +  Fl   w+ ++ +vl    i  iia ++e          w++ + il+    + ll a+i + ++   +     L +s  ++ +v+R+gk +++   ++v GD++ +++ ++  +paD+ l+  + +lk+D+++ltGEs pv kk gd++ sg +  +G  ++vv+a G+n   Gk  + v e ++   e+          ++l ki ++ig   +v ++   ++  ++ l   k+ +r+ l++++    +l +++P +lp  ++ +lA  +++++k++ +v+kl a E +   + +C DktGtlt nk+s    ++  ++++ +d
  MMETSP1061-20121228|8553_1 172 GIDKDEVDFRREVFGSNAIAEKP---MESFLALCWEAVQdFVLVmliILGIIALVVEIsdkgpcgscWAEGTAILLtvllVVLLTASIDYAKQFAFQRLARSLFES--NTKQVIRNGKQMTVIDDDIVVGDILCVNSHSLasIPADCALLGpAADLKMDESTLTGESEPVAKKPGDVILSGTNAIQGSGNMVVIAVGINSVAGKIRAQVYESSDhedELgdsdedsplfTKLDKIAKQIGIAGMVAACFSFIVSCIIGLGVEKDPIRNLLNYLVtaiTVLAVAVPEGLPLAVTLALAFSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTANKMSARALYVAGKDMTVDD 520
                 7889****************985...56666677766653333300033455555655899******999776654111133456666666666555555555544..5568********************99987754349*****9962566*************************************************877765443211122111112222257899***************99********999999999988865221677899********************************************************999999988888776 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 1.4e-13
   TIGR01647 359 vpfdpvekrteatledeetgkkfkvtkGapqvildlvkekkeieee........veekvee...lAerGlRaLgvava........................dekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglg 482
                   f + +k     +  e+ g++   tkGa +v+l+ +++  +  +e        vee +++   +A rG+R++++a+                         +++ +   +gl+ + DP r++  ++ie++   g++v+mvtGD+   a  +a + g+ 
  MMETSP1061-20121228|8553_1 613 YGFSSGRKMMSWAVPLEN-GEHRIYTKGAQEVVLSRCNKYIADGNEikdltpegVEEFMKHsqiYARRGMRTIALAYGdlpagtdlekisstihnpdgsdafQAESNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGIL 770
                 566666676666666665.99999*************9875555445666888866655433349***********999********************99999999999************************************9999999888875 PP

  == domain 3    score: 69.6 bits;  conditional E-value: 1.4e-22
   TIGR01647 535 hlvgmtGDGvnDaPaLkkAdvGiAva.gAtDAArsaaDivltepGlsviveAikesRkiFqRmksyviYrvaltlrivvflallililkfk.lpvllvvllallnDg.tiltiak 646
                  +++mtGDG nDaPaLk+Ad+G A+    t  A+ aaDi+l++  ++ iv+A k  R+i++ +++++ +++++ +  v++  + ++  +++ l+++ ++ + +l D+ + l++a 
  MMETSP1061-20121228|8553_1 876 QVIAMTGDGTNDAPALKRADIGFAMGiSGTQIAKDAADIILLDDNFASIVTAAKWGRNIYASLQKFLQFQLTVNISAVTTAIVGACYSQYSpLAAIQLLWVNILMDSlASLALAS 990
                 589*********************96367***********************************************9999999988888889***********999634566665 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   1.3e-17   3.2e-15     129     292 ..     162     340 ..      73     355 .. 0.71
   2 !  143.1   0.0   5.9e-45   1.4e-42     377     992 ..     413    1071 ..     400    1116 .. 0.72

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 1.3e-17
   TIGR01657 129 dylkaagesnGLtkgeiakrkelyGknei.eikvksfleLlveevlkPfyvfqv.fsvi...lWllde.....yyyya...llilvlsvlsivlsvkeirkqlkelrdmvaksqsveViRekkeetiasdelvpgDivlisrleekllpcDavLl..egscivnEsmltGEsvpvlKvp 292
                   l  +  ++G++k e++ r+e++G+n i e ++ sfl L +e v   + v+++ +++i   + + d+      +      ll+++l+vl+ +++ + ++ + ++l+    +s + +ViR++k++t+  d++v gDi+ ++      +p+D+ Ll  +++  ++Es ltGEs pv K p
  MMETSP1061-20121228|8553_1 162 TLLLRSCPEQGIDKDEVDFRREVFGSNAIaEKPMESFLALCWEAVQDFVLVMLIiLGIIalvVEISDKgpcgsCWAEGtaiLLTVLLVVLLTASIDYAKQFAFQRLARSLFESNTKQVIRNGKQMTVIDDDIVVGDILCVNSHSLASIPADCALLgpAADLKMDESTLTGESEPVAKKP 340
                 22333333459*****************945689********9998877665541455411144455422221454331224566777777777778888899**************************************99************44456789*************976 PP

  == domain 2    score: 143.1 bits;  conditional E-value: 5.9e-45
   TIGR01657  377 aligfiyvlieli...kne.rskkklilrsldiitivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnaee..........flkevteds..sekksetlkalatchsltkled..k...lvGDpldlkmleav...gwtleeedesaleesilavvrtedktkelsiirrfeFssalkrmsvivkteeerkkellafvKGaPEtiaellsk.....etv....psdykevl...ksytreGfRvlAlaskeLp.kltlskaqdlsRd.......avEsnleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekkktlilaeaeepekgksaqikfeskdekiastkveqpvkekkdslesllasryslalsGkalavlleksk...ellkklllkvkVfARvaPeqKeelvetlkkld........ytvlmcGDGaNDcgALkqAdvGisLseaeAsv...aapFtSklasiscVtnvireGRaaLvtslq...vFkylalysliqflsvliLylkgsklgdgQfltidllliavvalllsrskplkkLskerpss...nllsvylllsvllqfvlvilslvllvfevkkqpwykeeevvelekenakslentvvfivslfqyli 992 
                  a ++fi+++i ++   k++ r+  + ++ ++ ++ + vP +LP++++++ +++ +r+ k++ +  + +  ++ G+  ++c DKTGTLT +++  +++++  ++ +          f++e   d    e++++ + + +     ++l+         G p ++++l  v   g+++e+ ++s   +s        +++  ls  + + Fss  k ms  v  e+    e+ +++KGa E++ ++++k     +++    p+ ++e +   + y+r+G+R +Ala+  Lp  + l+k++    +       + Esnl  +Gl+ +e +l+++  + i++   a i+v m+tGDn+ Ta s+a ++gi++  ++       ++e+ +s+  +      ++  ++v   v+ ++ ++ +l +++ ++    + l+vl ++s+     l + l ++  fA         + +tlk+ d        ++++m GDG+ND  ALk+Ad+G ++  +  ++   aa  +    + + +++  + GR  +  slq    F+  +  s ++   v   y+++s l  +Q+l++++l+ ++ +l+l+ ++p+++L k++p +   +++ + +  ++l+q    i + + l f   k+   ++ +vv  e+ +++s++ t +f   + ++l 
  MMETSP1061-20121228|8553_1  413 ACFSFIVSCIIGLgveKDPiRNLLNYLVTAITVLAVAVPEGLPLAVTLALAFSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTANKMSARALYVAGKDMTvddhkrtlgdFVREHLLDLsiLEMIGKIISINSMNETTLELDKdgAvegSAGNPTEVALLVLVhdlGFNYEHIRNSTRGRS-----SYGEQADYLSDGKLYGFSSGRKMMSWAVPLENG---EHRIYTKGAQEVVLSRCNKyiadgNEIkdltPEGVEEFMkhsQIYARRGMRTIALAYGDLPaGTDLEKISSTIHNpdgsdafQAESNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGILRDFHFKE----GTTERISSNLKENVLLTGDVFRKRVYRTVAGEDGATGKLEFDQAAFDKIWPFLRVLARSSPddkLTLAHGLNQSALFADK------AICKTLKNEDnidifpdrQVIAMTGDGTNDAPALKRADIGFAMGISGTQIakdAADIILLDDNFASIVTAAKWGRN-IYASLQkflQFQLTVNISAVTTAIVGACYSQYSPLAAIQLLWVNILMDSLASLALASEPPVEELLKKPPVNrtrHMITKHMWANMLGQASYQICVVMTLLFAGPKMFDLEPGHVV--EDRKENSVHYTLIFNAFVWMQLF 1071
                  55555555555541115667778888999***********************************************************************99999667777766644333333235555555555555555666665422211135889998876543211444444444444444.....45888999*****************99988777...3568*************9644444233222266555554111679****************76677777654332223334478*******************************************************9884322....23333333333333333344555666666666555778888888887788888888888883322334445556666633......3444444443222333336799********************99887777222688999999*************4.4444441115777777777777778889****************************************965222699999999*****999999999999998888888888887..56666789999999766666654 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.9   2.8   4.3e-33     1e-30      23     276 ..     245     516 ..     210     530 .. 0.80
   2 !   28.9   0.0   4.7e-10   1.1e-07     365     431 ..     708     774 ..     618     796 .. 0.73
   3 !   74.7   1.6   6.3e-24   1.5e-21     449     539 ..     866     964 ..     832     989 .. 0.84

  Alignments for each domain:
  == domain 1    score: 104.9 bits;  conditional E-value: 4.3e-33
   TIGR01525  23 lllvllllgelLeelakskasealsellelapeealllkeddseeevaveelqvgDivkVkpGe..kipvDGeviegese..vDesllTGEslpvekkegdeViaGtvnlegsleikvtkvgedstlaqivklveeaqe.........skakiqrladklasyfvplvlaialltflvwlalga.......lka..ealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvevlkdse 276
                 ++l+ +ll   + ++ak+ a ++l+  l  +++  ++++ ++++ +v  +++ vgDi+ V+ ++  +ip+D+ ++   +   +Des+lTGEs pv+kk+gd +++Gt   +gs ++ v +vg +s+  +i   v e++          + +++ + +dk+a+++ ++ +++a   f+v++++g        + +  + l++a++vL va+P +L la+++a++ ++ +++k+  L++  +a E++  ++t++ DKTGTLT  k++  ++ v+++  
  MMETSP1061-20121228|8553_1 245 TVLLVVLLTASI-DYAKQFAFQRLARSLFESNT-KQVIR-NGKQMTVIDDDIVVGDILCVNSHSlaSIPADCALLGPAADlkMDESTLTGESEPVAKKPGDVILSGTNAIQGSGNMVVIAVGINSVAGKIRAQVYESSDhedelgdsdEDSPLFTKLDKIAKQIGIAGMVAACFSFIVSCIIGLgvekdpiR-NllNYLVTAITVLAVAVPEGLPLAVTLALAFSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTANKMSARALYVAGKDM 516
                 333333333333.46666666666655444333.34455.46899999*************996448********99996337***********************************************999988865111111111467778899***********************999999876642.3579********************************************************************99999987655 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 4.7e-10
   TIGR01525 365 qgktvvlvavddellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgiidevv 431
                 +g  ++ + ++   +gl+ +eD+lr+e+ +ai++   +gi+v ++tGDn s+a+++A + gi+++++
  MMETSP1061-20121228|8553_1 708 DGSDAFQAESNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGILRDFH 774
                 4555555666668899*******************9999**********************966655 PP

  == domain 3    score: 74.7 bits;  conditional E-value: 6.3e-24
   TIGR01525 449 e.......egkkvamvGDGiNDApALaaAdvGiamg.sgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlalvynlvaiplaaggllpla 539
                 e       +++++am GDG NDApAL++Ad+G amg sg+++a++aAD++ll+d+ +s+++a +  r++ + +++ l + l++n+ a+ +a++g    +
  MMETSP1061-20121228|8553_1 866 EdnidifpDRQVIAMTGDGTNDAPALKRADIGFAMGiSGTQIAKDAADIILLDDNFASIVTAAKWGRNIYASLQKFLQFQLTVNISAVTTAIVGACYSQ 964
                 455555545568*******************************************************************************99876554 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.5   1.7     7e-30   1.7e-27      29     354 ..     168     506 ..     145     524 .. 0.76
   2 !   38.2   0.0   3.6e-13   8.6e-11     414     556 ..     615     771 ..     597     801 .. 0.83
   3 !   63.9   0.2   6.4e-21   1.5e-18     602     734 ..     875    1009 ..     839    1034 .. 0.85

  Alignments for each domain:
  == domain 1    score: 93.5 bits;  conditional E-value: 7e-30
   TIGR01524  29 sheeGltaaevterlkkyGenevaeekkspalvqllrafnnpfiyvlailagvsylt.............edleavviialmvslsgllrfvqearaeraadalkkmvkntatvlrvinenieaaleevpidelvpGdviklaaGdl..ipadvrvia.ardlliaqsaltGeslpvekvaatkeak.dkellelenlll..mGtnvvsGraqavvlatGsstffGslakavsedreqtafdkGvksvs...kllirfmlvmvpvvllinGlskG...dwleaalfalavavGltpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivl 354
                 + e+G+ + ev  r++++G n +ae+   + l + ++a ++   ++l+il+ ++ +              e     + ++l+v+l++ +++ +++  +r a +l +  +nt +v+r      ++ +  v  d++v Gd++ + +  l  ipad  ++  a dl + +s+ltGes pv k   +      + +   +n+++  +G n v+G+ +a v    ss +  +l  +  ++   t +dk  k++    ++   f +++  ++ l  G+ k    + l+  + a++v     pe lp+ v+ +la  + +++k+  +v++l+a + +G    +ctdktGtlt +k+  
  MMETSP1061-20121228|8553_1 168 CPEQGIDKDEVDFRREVFGSNAIAEKPMESFLALCWEAVQDFVLVMLIILGIIALVVeisdkgpcgscwaEGTAILLTVLLVVLLTASIDYAKQFAFQRLARSLFE--SNTKQVIR------NGKQMTVIDDDIVVGDILCVNSHSLasIPADCALLGpAADLKMDESTLTGESEPVAKKPGDVILSgTNAIQGSGNMVViaVGINSVAGKIRAQVYE--SSDHEDELGDSDEDSPLFTKLDKIAKQIGiagMVAACFSFIVSCIIGL--GVEKDpirNLLNYLVTAITVLAVAVPEGLPLAVTLALAFSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTANKMSA 506
                 5689*************************************99999*******999999******9988544444445667788888999*********9999965..89******......778889999**********999887669*****996489****************98655544430344444555544124666666666666654..344444555544444444555554444431113333444444443322..4445322266666677777777778***************************************************99864 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 3.6e-13
   TIGR01524 414 fdferrrlsvvveeaaevrrlickGaveelltvath.lreggavvalsesekeelkavteelnrqGlrvvavatkklkasead.............lskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGida 556
                 f   r+ +s  v  ++ ++r+ +kGa e +l+ + + +  g+++  l+ +  ee+ + ++ + r+G+r +a+a+  l+a+ +               + + e++l+  G+++  dp ++   +ai++   +gi v+++tGdn+  +a i  + Gi  
  MMETSP1061-20121228|8553_1 615 FSSGRKMMSWAVPLENGEHRIYTKGAQEVVLSRCNKyIADGNEIKDLTPEGVEEFMKHSQIYARRGMRTIALAYGDLPAGTDLekisstihnpdgsDAFQAESNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGILR 771
                 6667899999998888899***************873577899*******************************999987542232222211122122345999***********************************************999954 PP

  == domain 3    score: 63.9 bits;  conditional E-value: 6.4e-21
   TIGR01524  602 GhtvGflGdGindapalrkadvGisvd.saadiakeasdiillekslmvleegvieGretfgnilkylkmtassnfgnvfsvlvasafipflpmlalhlliqnllyd.vsqlalpfdkvdkeflkkprkweakdl 734 
                    ++ + GdG ndapal+ ad+G ++  s ++iak+a+diill+ ++  +  +   Gr++++ + k+l+   + n + v + +v + +  + p+ a+ ll  n+l d ++ lal  +   +e lkkp    ++++
  MMETSP1061-20121228|8553_1  875 RQVIAMTGDGTNDAPALKRADIGFAMGiSGTQIAKDAADIILLDDNFASIVTAAKWGRNIYASLQKFLQFQLTVNISAVTTAIVGACYSQYSPLAAIQLLWVNILMDsLASLALASEPPVEELLKKPPVNRTRHM 1009
                  4688999*****************99747799********************************************************************99988875899******999******976555544 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.9   5.6   2.5e-21   5.9e-19      22     254 ..     246     508 ..     233     513 .. 0.74
   2 !   17.5   0.0   1.2e-06   0.00029     315     364 ..     720     768 ..     708     777 .. 0.90
   3 !   69.6   0.5   1.9e-22   4.6e-20     370     469 ..     862     961 ..     854     986 .. 0.93

  Alignments for each domain:
  == domain 1    score: 65.9 bits;  conditional E-value: 2.5e-21
   TIGR01512  22 alllllfslgetLeelaskrakeal.kaLlelaPdtarr..leeeVaveelkvgdvvvVkkGe..rvPvDGevlsges..sldesalTGEsvpvekakgdevlaGainldgvlkievtkeaedstiakivklveeaqs.........ekaktqrlidrlaekytlvvlliallialvs.................sllvalvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvsd 254
                 +ll++l++++    ++a++ a ++l ++L e++ +++ r  ++ +V  +++ vgd++ V+++    +P+D+++l +++  ++des+lTGEs pv+k++gd +l+G+   +g+ ++ v +   +s+  ki   v e++          e +++ + +d++a++  ++ +++a   ++vs                 +l++a+++L va P +L ++v++al+ +  +  ++  l++  ++ e+++ ++t+ +DKTGTLT++k++  +
  MMETSP1061-20121228|8553_1 246 VLLVVLLTAS---IDYAKQFAFQRLaRSLFESNTKQVIRngKQMTVIDDDIVVGDILCVNSHSlaSIPADCALLGPAAdlKMDESTLTGESEPVAKKPGDVILSGTNAIQGSGNMVVIAVGINSVAGKIRAQVYESSDhedelgdsdEDSPLFTKLDKIAKQIGIAGMVAACFSFIVSciiglgvekdpirnllnYLVTAITVLAVAVPEGLPLAVTLALAFSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTANKMSARA 508
                 3333333333...244555554444246777777777662256678889***********996337********99983357***********************************************99888876411111111145667777899988876665555444333321111111121111111167899************************************************************998665 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.2e-06
   TIGR01512 315 kllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelG 364
                  ++gl+ ++D +r+++ +ai++   +g+  + ++tGD+ ++a+++a ++G
  MMETSP1061-20121228|8553_1 720 VAVGLVGIEDPLRHEVPDAIESCYGAGI-DVRMVTGDNPSTAASIAYQAG 768
                 5789***********************7.66****************999 PP

  == domain 3    score: 69.6 bits;  conditional E-value: 1.9e-22
   TIGR01512 370 ellPedKveivkelkevamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiilvlillallgvl 469
                  l+ ed ++i+ + + +am GDG NDapaL++Ad+g amG sg+++a ++AD++ll+d+ +++++a k +r++ + +++ + + lt+ + ++ +a++g  
  MMETSP1061-20121228|8553_1 862 TLKNEDNIDIFPDRQVIAMTGDGTNDAPALKRADIGFAMGISGTQIAKDAADIILLDDNFASIVTAAKWGRNIYASLQKFLQFQLTVNISAVTTAIVGAC 961
                 67889***********************************************************************************999999999875 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.3   6.2   7.2e-20   1.7e-17      49     283 ..     246     510 ..     234     558 .. 0.75
   2 !   27.6   0.0   1.2e-09   2.8e-07     341     436 ..     702     796 ..     682     798 .. 0.88
   3 !   54.5   1.6   8.3e-18     2e-15     428     523 ..     875     970 ..     865     988 .. 0.86

  Alignments for each domain:
  == domain 1    score: 61.3 bits;  conditional E-value: 7.2e-20
   TIGR01511  49 livllllGrlleelakskaskalekLaklkpeeatllkkdvdv..eelqvgdilkvkpge..kipvDGvvveGes..evdeslltGEslpvkkkvgdeviaGtvngegsllvkvtkvgedtllaqivklveeAqqsk.........akiqrlAdkvaslfvpvviaiavltfvi...............WllalevavtvliiaCPcalGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtevk 283
                 ++ ++ll   ++   +   ++  + L + + +++    k++ v  +++ vgdil v++ +  +ip+D+ ++   +  ++des ltGEs pv+kk+gd +++Gt  ++gs  + v +vg +++  +i + v e+  +          +++ +  dk+a+    + ++ a ++f++                l  l++a+tvl +a P +l LA+ l+++ ++ ++ k+  l+++ +a e++  ++t++ DKTGTLT  k++  +  
  MMETSP1061-20121228|8553_1 246 VLLVVLLTASIDYAKQFAFQRLARSLFESNTKQVIRNGKQMTVidDDIVVGDILCVNSHSlaSIPADCALLGPAAdlKMDESTLTGESEPVAKKPGDVILSGTNAIQGSGNMVVIAVGINSVAGKIRAQVYESSDHEdelgdsdedSPLFTKLDKIAKQIGIAGMVAACFSFIVsciiglgvekdpirnLLNYLVTAITVLAVAVPEGLPLAVTLALAFSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTANKMSARALY 510
                 4445556666666666666666667777777777666666666456899*******9875338*******976662268********************************************999999987765431111111124444445666665555555555555544111111111111111456799*************************************************************999876655 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 1.2e-09
   TIGR01511 341 tdekeekgttsvlvakkgelaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgievlaevlPedKaakvkelqekkvamvGD 436
                  + ++ +g+ ++ ++++  +++++ +ed l++e+ ++ie+   +gi v ++tGDn ++a+++A + gi ++     e+ ++++ +  +++v++ GD
  MMETSP1061-20121228|8553_1 702 STIHNPDGSDAFQAESNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGI-LRDFHFKEGTTERISSNLKENVLLTGD 796
                 555666777888888999999***********************************************.666667788899999999999999998 PP

  == domain 3    score: 54.5 bits;  conditional E-value: 8.3e-18
   TIGR01511 428 ekkvamvGDGiNDapaLaaadvgiaig.agtdvaieaadvvllnd.lkdvataielsrktlkkikqNllwalgYNviaipiAagvlvpiglllsPava 523
                 ++++am GDG+NDapaL +ad+g a+g +gt++a++aad++ll+d  ++++ta +  r+ +  +++ l + l+ N+ a+  A+   +  + + sP++a
  MMETSP1061-20121228|8553_1 875 RQVIAMTGDGTNDAPALKRADIGFAMGiSGTQIAKDAADIILLDDnFASIVTAAKWGRNIYASLQKFLQFQLTVNISAVTTAIVGAC--YSQYSPLAA 970
                 6899**********************868*************975389*******************************99975443..344566554 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   8.8e-05     0.021      53     125 ..     242     316 ..     215     321 .. 0.72
   2 !   18.1   0.3     4e-07   9.6e-05     344     392 ..     472     521 ..     463     557 .. 0.82
   3 !   71.3   0.0   3.4e-23   8.1e-21     461     673 ..     559     771 ..     538     789 .. 0.84
   4 !   10.0   0.6   0.00011     0.025     772     922 ..     878    1019 ..     871    1160 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 8.8e-05
   TIGR01652  53 sivpLavvllvtaiKeaieDirrrksDkevNnkkvevleesakfkeikwkdlkVGdivkvkkd..eeiPaDllll 125
                  ++++++v+l+ta  +    +  ++  +++ +++++++ +++k  ++   d+ VGdi+ v++     iPaD+ ll
  MMETSP1061-20121228|8553_1 242 ILLTVLLVVLLTASIDYAKQFAFQRLARSLFESNTKQVIRNGKQMTVIDDDIVVGDILCVNSHslASIPADCALL 316
                 3445566666677777888888888888887777777777789999***********9997762268*****998 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 4e-07
   TIGR01652 344 tpasvrtsnlneeLGqveyifSDKTGTLTqNkmefkkcsiagvsyg.kkl 392
                     vr +n  e +G   +i  DKTGTLT Nkm+ + + +ag +++ + +
  MMETSP1061-20121228|8553_1 472 EHNLVRKLNACETMGCATTICTDKTGTLTANKMSARALYVAGKDMTvDDH 521
                 5567999**********************************998874444 PP

  == domain 3    score: 71.3 bits;  conditional E-value: 3.4e-23
   TIGR01652 461 ddeeeltyqaeSPDEaAlVkaardlGfsllertkksisllieergeekey.eiLnvleFnSsrKRmsvivrlpddellLlcKGADsvifkrlse..........esekvlektkehlekyaseGlRTLviarrelseeeYeewnekyeeAstalkdreekleevaeliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLls 673
                 d+++ ++  a  P E+Al    +dlGf + +  ++  +   +  ge+ +y    +++ F+S rK ms  v l+++e ++++KGA  v+++r ++           + + +e+ ++h + ya+ G+RT+ +a+ +l   +        e+ s+++++ +        + E +L  +g  +iED L ++Vp++ie+   Agi + ++TGD   TA +i+y + +l+
  MMETSP1061-20121228|8553_1 559 DKDGAVEGSAGNPTEVALLVLVHDLGFNYEHIRNS--TRGRSSYGEQADYlSDGKLYGFSSGRKMMSWAVPLENGEHRIYTKGAQEVVLSRCNKyiadgneikdLTPEGVEEFMKHSQIYARRGMRTIALAYGDLPAGT------DLEKISSTIHNPDGSDAF---QAESNLVAVGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGILR 771
                 55567888999*****************9987777..4466777787887244689***********************************9998874443322222346778899999****************9875......667888999987765444...4699************************************************988775 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00011
   TIGR01652  772 tlaigdGaNDVsmiqeAdvG..vGisGkEGkqAvmasDfaigqFrfLekLlL.vHGrwsYkRisklilyffyknlilalilfwyslvnefsgqtlyeewllvlynvifTslPvivlGvldqdvsaslllkyPqLYkegikgkefsvkvflvwml 922 
                  +   gdG+ND   ++ Ad+G  +GisG+  + A  a+D+ +   +f + +     Gr+ Y  + k +++ +  n+  + + ++ + ++++s+ ++++ +     n++  sl  ++l   +  v++ l lk P +     + ++  +k +++ ml
  MMETSP1061-20121228|8553_1  878 IAMTGDGTNDAPALKRADIGfaMGISGT--QIAKDAADIILLDDNFASIVTAaKWGRNIYASLQKFLQFQLTVNISAVTTAIVGACYSQYSPLAAIQLLW---VNILMDSLASLAL-ASEPPVEE-L-LKKPPV----NRTRHMITKHMWANML 1019
                  4556****************55578876..67999*****988777665543146********************9999999999999999988877543...3566666666666.33333332.2.333332....2333444455555555 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   6.4   1.4e-06   0.00034     102     327 ..     271     515 ..     205     525 .. 0.70
   2 !   12.1   0.0   3.2e-05    0.0078     438     488 ..     722     773 ..     689     792 .. 0.80
   3 !   49.8   1.2   1.3e-16   3.2e-14     508     603 ..     875     974 ..     839     990 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.4e-06
   TIGR01497 102 kketlakllskdgaikkvpadelkkGdvvlveaGdv..ipadGevieGvas..vdesaitGesapvlkesGgdfasvtGGtrivsdwlvvevtadpGesfldrmialve......Gaerrktp.....neialtvllv.altlvfllvvatlyplaayagvkis.vsvlvallvalipttiGGllsaiGia...GmdrvarfnviatsGraveaaGdvdtlvldktGtitlGnrlaeefipvqGad 327
                   e+ +k++  +g+  +v  d++  Gd++ v++  +  ipad  ++  +a   +des++tGes pv k++G  + s t   +   + +v+ v ++   + +   +          G + + +p     ++ia ++ ++  ++  f ++v+++  l +  +   + ++ lv+ + +l  +   Gl  a+ +a      r+++   +    +a e+ G   t+  dktGt+t  n++++  + v G+d
  MMETSP1061-20121228|8553_1 271 LFESNTKQVIRNGKQMTVIDDDIVVGDILCVNSHSLasIPADCALLGPAADlkMDESTLTGESEPVAKKPGDVILSGTNAIQGSGNMVVIAVGINSVAGKIRAQVYESSdhedelGDSDEDSPlftklDKIAKQIGIAgMVAACFSFIVSCIIGLGVEKDPIRNlLNYLVTAITVLAVAVPEGLPLAVTLAlafSSRRMTKEHNLVRKLNACETMGCATTICTDKTGTLTA-NKMSARALYVAGKD 515
                 445667888899999999*************98875559*****9988885337********************9999998888888888888887666665443222111122345555666211124455554333123445666666666665555433331344555555555556678888877763334568999999999999*******************95.67777777777776 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 3.2e-05
   TIGR01497 438 yGviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGv.ddf 488
                 +G++ + d ++  + + +e     Gi   m+tGdn+ taa+ia +aG+  df
  MMETSP1061-20121228|8553_1 722 VGLVGIEDPLRHEVPDAIESCYGAGIDVRMVTGDNPSTAASIAYQAGIlRDF 773
                 577778888888888888888999***********************84344 PP

  == domain 3    score: 49.8 bits;  conditional E-value: 1.3e-16
   TIGR01497 508 GklvamtGdGtndapalaqadvgvamn.sGtqaakeaanmvdldsdptklievveiGkqllitrGalttfsiandv.akyfaiipaifaaaip..klqal 603
                  +++amtGdGtndapal +ad+g am  sGtq ak+aa+++ ld + + ++   + G+++  +   +  f ++ ++ a   ai+ a ++   p   +q+l
  MMETSP1061-20121228|8553_1 875 RQVIAMTGDGTNDAPALKRADIGFAMGiSGTQIAKDAADIILLDDNFASIVTAAKWGRNIYASLQKFLQFQLTVNIsAVTTAIVGACYSQYSPlaAIQLL 974
                 4689**********************659******************************************99887255678888888765542223333 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.2     2e-06   0.00049     205     244 ..     876     916 ..     857     927 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2e-06
   TIGR00099 205 enviaiGDseNDieMleaagvgvamgnaneel.kaladyvt 244
                 + +++ GD+ ND++ l+ a++g+amg + +++ k++ad + 
  MMETSP1061-20121228|8553_1 876 QVIAMTGDGTNDAPALKRADIGFAMGISGTQIaKDAADIIL 916
                 557789*******************9766554266777665 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.9e-06    0.0014     145     216 ..     851     925 ..     836     927 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.9e-06
   TIGR00338 145 geivdesakaktllkllekegislektv.avGDGanDlsmikaAglgiaf..nakpvlkekadiviekkdltdil 216
                 + + +++a  ktl++  +   ++ ++++ + GDG+nD +++k+A++g a    + ++ k++adi + + ++++i+
  MMETSP1061-20121228|8553_1 851 SALFADKAICKTLKNEDNIDIFPDRQVIaMTGDGTNDAPALKRADIGFAMgiSGTQIAKDAADIILLDDNFASIV 925
                 5555555555666666666666777777357**************998762268999******999988888776 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.12        30       5      81 ..      33     109 ..      29     167 .. 0.76
   2 !   10.5   0.1   0.00041     0.099     189     221 .]     864     900 ..     854     900 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.12
   TIGR01484   5 DlDgTLldpk..lelseelieaLerlrealgvkvvivTGRslaeikellkqlnlelpliaengalieaqgeklyaealp 81 
                 D+D+TL++ +  + + ++++  +++ ++++g+ v +   +++a+ +++   ++  + +++ ++++ + ++ek +a+ ++
  MMETSP1061-20121228|8553_1  33 DVDETLVSLEknGGVKDATS--IQKQSKNEGFLVKPSDLSEFAKDRDHEALIRILEKAVDGHAHILKRKNEKGTASIDD 109
                 9*******999999999999..999999999999999999999999999999999999999999999999887774333 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00041
   TIGR01484 189 leeln....lkkeeilafGDsgNDeemlevaglavav 221
                  +e n     +++ i   GD++ND+++l++a+ ++a+
  MMETSP1061-20121228|8553_1 864 KNEDNidifPDRQVIAMTGDGTNDAPALKRADIGFAM 900
                 45555666678899999***************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 1.35u 0.18s 00:00:01.53 Elapsed: 00:00:01.18
# Mc/sec: 1324.37
//
Query:       MMETSP1061-20121228|8554_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 554.35
//
Query:       MMETSP1061-20121228|8558_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|8556_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1730.52
//
Query:       MMETSP1061-20121228|8557_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 1422.55
//
Query:       MMETSP1061-20121228|8555_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.8    5.9  10.9       0.41    9.0   2.3    2.9  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.6     0.054   2.2e+02      11      21 ..      55      65 ..      45      79 .. 0.59
   2 ?    9.0   2.3    0.0001      0.41       1      29 []     118     147 ..     118     147 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.054
   TIGR01409 11 aaagaaaglgl 21
                aa++aa+++++
  MMETSP1061-20121228|8555_1 55 AAVVAACTIAI 65
                55555555543 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0001
   TIGR01409   1 lsRRdFLkaaaaagaaaglgl.llpsparA 29 
                 ++RRd L +aa a +aa++++ l + pa A
  MMETSP1061-20121228|8555_1 118 TTRRDSLSMAASALVAAATATsLGSEPALA 147
                 79********99999999999999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 2086.44
//
Query:       MMETSP1061-20121228|8559_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00033   17.3   4.2     0.0014   15.2   0.1    2.4  2  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D
     0.0008   15.9   1.2       0.11    8.9   0.0    2.8  3  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0065   12.9   1.0        1.2    5.5   0.0    2.8  3  TIGR00764 lon_rel: putative ATP-dependent protease


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1     1e-06    0.0014      71     154 ..     113     196 ..      65     211 .. 0.78
   2 !    3.2   0.1    0.0043       5.9     229     277 ..     359     407 ..     350     417 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1e-06
   TIGR02031  71 veeslasgkrvlqkgllaeanrgvlyvdelnlldeslvnrlldaldegvvivereGisvrePakfvLiatydpeegeealrehl 154
                 v++  a g+  l  g l  a++g+  +de +++de   +++ +++++ +v v + Gi     a+  ++a  +p  +  ++++ l
  MMETSP1061-20121228|8559_1 113 VTKDNATGELNLEGGALVLADKGICAIDEFDKMDEADRSSIHEVMEQQTVSVAKAGIVATLNARASVLAAANPLYSRYNRNKSL 196
                 44445566666777888889*******************************************999999999876655555555 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0043
   TIGR02031 229 veghRadlfavraAkalaAlegReeVeeeDlklAvelvllpRatrleek 277
                 v + R  l  +r+ +ala l+    V +eD+  A++l+ + +a++ ee+
  MMETSP1061-20121228|8559_1 359 VMTARQLLSILRLGQALARLRFSDFVAREDVDEAIRLTHMSKASLSEEQ 407
                 666777788899******************************9998885 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0018       2.5     206     236 ..      64      94 ..      53      99 .. 0.91
   2 !    8.9   0.0     8e-05      0.11     287     352 ..     125     190 ..     110     229 .. 0.85
   3 ?   -0.5   0.1     0.057        77     464     497 ..     361     394 ..     354     448 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0018
   TIGR00368 206 iaaaGghnllllGPPGsGktllakrlqgllP 236
                 +++ G+ n+ l+G PG  k  l k + ++ P
  MMETSP1061-20121228|8559_1  64 MTIRGDINICLMGDPGVAKSQLLKHVASVAP 94 
                 6789**********************99988 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 8e-05
   TIGR00368 287 kPGeislahnGvlfldellefkrkvldalrePledgeisisrakakilyParfqlvaamnpsPtGh 352
                 + G + la +G+  +de   ++     ++ e +e++ +s+++a    +  ar  ++aa np  + +
  MMETSP1061-20121228|8559_1 125 EGGALVLADKGICAIDEFDKMDEADRSSIHEVMEQQTVSVAKAGIVATLNARASVLAAANPLYSRY 190
                 568899*************************************99999************975544 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.057
   TIGR00368 464 svraldrilkvartiadlkeeekisrehlaeaie 497
                 ++r l +il++ +++a l+ ++ + re + eai 
  MMETSP1061-20121228|8559_1 361 TARQLLSILRLGQALARLRFSDFVAREDVDEAIR 394
                 5677778888888888888888888888888875 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0   0.00086       1.2      39      63 ..      71      95 ..      56     100 .. 0.87
   2 ?   -0.6   0.0     0.058        80     207     247 ..     123     163 ..     117     172 .. 0.81
   3 !    4.5   0.1    0.0016       2.2     345     393 ..     352     398 ..     346     419 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00086
   TIGR00764 39 nvlliGePGvGksmlakamaellpk 63
                n+ l+G+PGv ks l k +a + p+
  MMETSP1061-20121228|8559_1 71 NICLMGDPGVAKSQLLKHVASVAPR 95
                789****************998876 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.058
   TIGR00764 207 rveaGaihrahkGvlyideiatlslkvqqslltalqekkfp 247
                  +e Ga+  a+kG+  ide + +    + s+   + ++  +
  MMETSP1061-20121228|8559_1 123 NLEGGALVLADKGICAIDEFDKMDEADRSSIHEVMEQQTVS 163
                 578899999***********999888877777777766655 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.0016
   TIGR00764 345 rraGrkdkltlrlrelggvvraagdiavkkgkkyvtredvlealklakt 393
                 +raG +  +t   r+l +++r  + +a  + +++v redv ea++l+++
  MMETSP1061-20121228|8559_1 352 HRAGDQTVMT--ARQLLSILRLGQALARLRFSDFVAREDVDEAIRLTHM 398
                 5677665555..689****************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2201.39
//
Query:       MMETSP1061-20121228|8562_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2003.41
//
Query:       MMETSP1061-20121228|8563_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-08   30.2  10.9    2.9e-06   24.3   5.6    2.6  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    1.5e-07   28.6  13.9    2.3e-07   28.0   4.9    2.5  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
      7e-06   22.8   7.0    5.6e-05   19.9   0.8    2.8  3  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
  ------ inclusion threshold ------
       0.21    7.9  10.6     0.0082   12.5   1.8    2.4  3  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter


Domain annotation for each model (and alignments):
>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1   0.00095      0.98     249     328 ..      43     122 ..      24     143 .. 0.84
   2 !   24.3   5.6   2.9e-09   2.9e-06     106     315 ..     152     361 ..     122     460 .. 0.64
   3 ?   -0.8   0.2      0.12   1.2e+02     285     313 ..     432     460 ..     385     498 .. 0.53

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00095
   TIGR00895 249 akatllLwllyflllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpkvlalllllaavfa 328
                 +k+ l+L +  +l ++   +l s  P+L++ +g ++s+   + + +n++ +l+  + g+l+ r +  v  l  lla+   
  MMETSP1061-20121228|8563_1  43 SKNVLILIAIASLDNADKQMLSSSFPILEKVLGWDTSELGYFSICTNLAYALSLPMWGVLIHRNRNDVKNLQQLLASACG 122
                 677788888888999999999999***************************************99998877777776654 PP

  == domain 2    score: 24.3 bits;  conditional E-value: 2.9e-09
   TIGR00895 106 tqL.lvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafg..WrslflvggiiplllllllikvLpEsikflvek..kpekvrkilnaiapslqaeaqselaeekseekkkrsvvkllfkgklakatllLwllyflllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpk 315
                 t+L +++R + g+ lG+++p    L++Ey+p+ + +++ gl+ v    G  ++g+la++li   g  W+  +++ g+ ++ +   + + +    +++     k+++  ++    ++s++ +  ++   ++++e+++ ++ + ++++ +    ++  ++  +   + + ++s l +L+   g+  ++ a++ +   +  +lg  + g++ d   ++
  MMETSP1061-20121228|8563_1 152 TNLqVMVRCINGMALGSIIPLSQSLLAEYVPDELLGQAFGLLGV----GEKLAGTLASTLIVWAGgfWHYAYYLLGLTSVAMGCAT-RYMNRYGTYTSYPdfKTKDESQQTIVFENSATDNDVESHRGDSKTEDVNMNSLRQILNKIIRLPAFICLVAQGVFGGTPWDMMSFLLLLMDWRGFTKNQIATIQITSGLSSMLGGQFGGTVGDYAARG 361
                 3341568**********************************975....5677888888888777667********98888876654.45555555655553434443444444445555555556666667777788888888888888888888888888778888888888888888888888888887777777777777777666543332 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.12
   TIGR00895 285 skaalllvllnvGgvlgslllgaladrlg 313
                 ++a ++ + + +  v g+l+ + l+  l 
  MMETSP1061-20121228|8563_1 432 ERAQIVALWIVMEKVTGALFGAPLVGYLT 460
                 34444433333333333333333332222 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   4.9   2.2e-10   2.3e-07      14     293 ..      63     377 ..      58     409 .. 0.64
   2 !    3.3   1.5    0.0071       7.3     113     147 ..     429     464 ..     367     509 .. 0.59

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 2.2e-10
   TIGR00881  14 falalpelqeeiglsktdlGlllsafsiaYgiskfvvgvv.....sDrvsarvflaigLilvaivnlflgfss...............slwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivslilllllr..dspqsvglpkleelrnee......keedkekkeeeltkkeillqyv..lknkvlwlislvnvfvyvvrtgiedW....vplYltqekglskekasvavtlfelaglvGtllaGwlsDk.....lfkgrraplavifma 293
                 ++ + p l   +g + ++lG+ + +  +aY++s  + gv+      D ++ +++la++   ++++++ ++ ++               s  + ++++ +nG++ g   p++++ll+++++ +  G++++++ +++ ++g l+   +++++     wh ++++ g+  + ++     + r       +  +  +e ++        +++d e +  +++++   ++ +  ++nk++ l ++  ++ +   +g + W    + l l++ +g++k +  +++++  l  + G    G + D      lf+gr  + + i++a
  MMETSP1061-20121228|8563_1  63 LSSSFPILEKVLGWDTSELGYFSICTNLAYALSLPMWGVLihrnrNDVKNLQQLLASACGVWGMATIAIAIVTrasdialasplpttlSTNLQVMVRCINGMALGSIIPLSQSLLAEYVPDELLGQAFGLLGVGEKLAGTLAST-LIVWA--GGFWHYAYYLLGLTSVAMGCATRYMNRygTYTSYPDFKTKDESQQTIvfensaTDNDVESHRGDSKTEDVNMNSLrqILNKIIRLPAFICLV-AQGVFGGTPWdmmsFLLLLMDWRGFTKNQIATIQITSGLSSMLGGQFGGTVGDYaarglLFRGRDSSQGRIMLA 377
                 56677888999999************************993333347789999***99999*********9999************886666677899********************************************94.44444..45578888888866665554333332210222222333333332222444444333333333333333333332222223322222222221.22222333331111224456666777777777777666666666666666666666666666666555555444 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0071
   TIGR00881 113 srserGtvvaiwnishnvggal.lpplvllaialll 147
                  rser+++va+w + + v gal  +plv    + +l
  MMETSP1061-20121228|8563_1 429 GRSERAQIVALWIVMEKVTGALfGAPLVGYLTEKML 464
                 589999999999999999999635677765554433 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0    0.0013       1.3     282     330 ..      70     118 ..      62     148 .. 0.78
   2 !   19.9   0.8   5.5e-08   5.6e-05      86     161 ..     150     221 ..     140     237 .. 0.83
   3 ?   -2.5   0.1      0.33   3.4e+02     262     302 ..     378     418 ..     362     451 .. 0.61

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0013
   TIGR00711 282 lqqvlgytalqaGlailpvglaalllsPiaGrladkidlrllvliglil 330
                 l++vlg+++ + G  ++ + la  l+ P+ G+l ++       l  l+ 
  MMETSP1061-20121228|8563_1  70 LEKVLGWDTSELGYFSICTNLAYALSLPMWGVLIHRNRNDVKNLQQLLA 118
                 899*****************************99986555444444444 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 5.5e-08
   TIGR00711  86 vannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFli 161
                 ++ nl+++   R i g+  g +ipls+sll++  p e +g+a +l+g++  +a +l  +L  w  +   W++ +++
  MMETSP1061-20121228|8563_1 150 LSTNLQVM--VRCINGMALGSIIPLSQSLLAEYVPDELLGQAFGLLGVGEKLAGTLASTLIVWAGGF--WHYAYYL 221
                 56677666..6*************************************************9998876..4544443 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 0.33
   TIGR00711 262 vislllglalygavlllPlylqqvlgytalqaGlailpvgl 302
                 + s++lg+ lyg +l    ++  +l  + +q  ++ +p + 
  MMETSP1061-20121228|8563_1 378 LASVVLGIPLYGLFLHSTNFYWAILWINLFQLTATWAPAAA 418
                 34566677777777766666666666666666666666554 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   1.8     8e-06    0.0082     120     210 ..     141     228 ..     115     236 .. 0.78
   2 ?   -1.9   0.1       0.2     2e+02     405     437 ..     348     381 ..     281     401 .. 0.41
   3 ?   -0.3   0.3     0.061        62     336     373 ..     372     409 ..     340     503 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 8e-06
   TIGR00894 120 slliPiaaavgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesd.lgWpavfYifgivgtv 210
                 +l  P  ++ ++ l +++R ++G+a g ++p +++lla ++P +  +++ ++   G +l   +    +  ++ +  + W   +Y+ g+ + +
  MMETSP1061-20121228|8563_1 141 ALASPLPTTLSTNLQVMVRCINGMALGSIIPLSQSLLAEYVPDELLGQAFGLLGVGEKLAGTL----ASTLIVWAgGFWHYAYYLLGLTSVA 228
                 555688888999999***************************999999888877766654443....33344444266********987765 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.2
   TIGR00894 405 gslaglissllv.gqllkqdsksaWkkvFllaal 437
                 g+++g +   ++ g+l +  + s+ +++  la++
  MMETSP1061-20121228|8563_1 348 GQFGGTVGDYAArGLLFRGRDSSQGRIMLALASV 381
                 2333333333331222233333444444444443 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.061
   TIGR00894 336 rKlftaiglllkglivvalaylssnaisaiilltlana 373
                  +++ a+++++ g+ +  l + s+n+++ai  + l + 
  MMETSP1061-20121228|8563_1 372 GRIMLALASVVLGIPLYGLFLHSTNFYWAILWINLFQL 409
                 46777778888888888888888888888877665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.45
# Mc/sec: 1501.74
//
Query:       MMETSP1061-20121228|8561_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1497.79
//
Query:       MMETSP1061-20121228|8564_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.7    8.0   5.4       0.18    9.9   1.6    1.5  2  TIGR01592 holin_SPP1: holin, SPP1 family


Domain annotation for each model (and alignments):
>> TIGR01592  holin_SPP1: holin, SPP1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.58   2.4e+03      63      74 ..      18      29 ..      16      31 .. 0.72
   2 ?    9.9   1.6   4.5e-05      0.18      35      69 ..      77     111 ..      75     118 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.58
   TIGR01592 63 takgkkqkqvlk 74
                 +k++ q++v++
  MMETSP1061-20121228|8564_1 18 RSKSRAQERVIR 29
                578888888875 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 4.5e-05
   TIGR01592  35 sistlvdavsvvFtiavslwawyKnNyitakgkkq 69 
                 ++ ++  ++++  t +v++  +y+nN+++++   +
  MMETSP1061-20121228|8564_1  77 TVTHVQLVATATATATVTVTNTYRNNNTSNNNNNN 111
                 5677777778899***************9887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 785.65
//
Query:       MMETSP1061-20121228|8565_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|8560_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-29  101.4   0.0    1.7e-29  100.9   0.0    1.2  1  TIGR03060 PS_II_psb29: photosystem II biogenesis protein Psp29
  ------ inclusion threshold ------
      0.027   11.4   0.4       0.14    9.0   0.0    1.9  2  TIGR03019 pepcterm_femAB: FemAB-related protein, PEP-CTERM system-associated


Domain annotation for each model (and alignments):
>> TIGR03060  PS_II_psb29: photosystem II biogenesis protein Psp29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.9   0.0   8.5e-33   1.7e-29       3     213 ..      71     279 ..      69     280 .. 0.93

  Alignments for each domain:
  == domain 1    score: 100.9 bits;  conditional E-value: 8.5e-33
   TIGR03060   3 ekrTvsDsKraFhaafprviaslYrrvvdElLVElhLLsvqkdFkadplFalGlvtvfdkftegYrPeehlealfealcssveldpeqlredakkllesakeksleelkellkekekkeksaealaaiagkekfkySRlfaiGllslleeaaedkekdeedlkerlkelaeklglskdrvekDlelyksnlekmeqalelveealeaerrk 213
                 e rTv ++ +aF +++ + +++lY+ +v +l+  +hL++v+++F  dp+++lG++ + + + + Y  +   e++ +al +sv+ld++++r da++l+e a++k++ee+++ lk+  ++  +a   ++++  e + ySR f +Gll+l+e +  + +kd e    + + ++e+lg s      D +l+    +k++ +  +++e+  +e+++
  MMETSP1061-20121228|8560_1  71 EVRTVGEAFSAFTEEYGYQVNALYKNMVTDLVGTIHLITVNARFVRDPVWSLGILSSLELLLKNYPEAGMYEEITSALFKSVNLDEAAIRADAATLTEWAQGKTKEEMEAALKNGDDSPLGA-VAQSVKADEYWMYSRYFGVGLLKLMEMSGVEMDKD-EVYPVMESWMSEQLGRSHLTACADSDLFFKVKDKLDMMETMMKEIEIREKKR 279
                 679**************************************************************99999********************************************99998887.578888889999*************9999665555.4455566779***********************************9999886 PP

>> TIGR03019  pepcterm_femAB: FemAB-related protein, PEP-CTERM system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   6.7e-05      0.14      27     142 ..      84     199 ..      76     201 .. 0.95
   2 ?    0.4   0.1     0.029        59     118     150 ..     265     298 ..     204     312 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 6.7e-05
   TIGR03019  27 eafghktyflyaeedgeivgvLPLaevrsrLFGnalvslpflvygGvladsaevaealeaeAeklakelkvdhlElRnltpahselpakelyvtfrkelaadeeallkaiprkqRa 142
                 e +g ++ +ly +   ++vg + L +v++r   + + sl  l    +l ++   a + e+  ++l k+++ d   +R  +++ +e+ + +++  ++ +l++ +++ l a+ + ++a
  MMETSP1061-20121228|8560_1  84 EEYGYQVNALYKNMVTDLVGTIHLITVNARFVRDPVWSLGILSSLELLLKNYPEAGMYEEITSALFKSVNLDEAAIRADAATLTEWAQGKTKEEMEAALKNGDDSPLGAVAQSVKA 199
                 67999***************************************************************************************************999999887766 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.029
   TIGR03019 118 yvtfrkelaadeeall.kaiprkqRaqvrkgika 150
                   t+ ke++  e++ + + +++k  a +r ++++
  MMETSP1061-20121228|8560_1 265 METMMKEIEIREKKRMaERLEKKAEAALRAAERE 298
                 4456666655444443134566666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1801.94
//
Query:       MMETSP1061-20121228|8567_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 1239.90
//
Query:       MMETSP1061-20121228|8571_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.37
# Mc/sec: 1266.38
//
Query:       MMETSP1061-20121228|8573_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1460.40
//
Query:       MMETSP1061-20121228|8569_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1681.64
//
Query:       MMETSP1061-20121228|8566_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1409.64
//
Query:       MMETSP1061-20121228|8574_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 3547.71
//
Query:       MMETSP1061-20121228|8579_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1050.17
//
Query:       MMETSP1061-20121228|8577_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 2375.80
//
Query:       MMETSP1061-20121228|8582_1  [L=1117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.12s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 3510.28
//
Query:       MMETSP1061-20121228|8585_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1034.79
//
Query:       MMETSP1061-20121228|8583_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 1235.56
//
Query:       MMETSP1061-20121228|8587_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 251.41
//
Query:       MMETSP1061-20121228|8589_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 702.18
//
Query:       MMETSP1061-20121228|8594_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1205.90
//
Query:       MMETSP1061-20121228|8593_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-07   27.9   6.4    4.2e-06   24.1   0.1    3.0  2  TIGR00569 ccl1: cyclin ccl1
  ------ inclusion threshold ------
       0.11    9.6   5.0       0.19    8.9   3.5    1.4  1  TIGR02783 TrbL_P: P-type conjugative transfer protein TrbL


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   2.1e-09   4.2e-06      42     116 ..      25      97 ..       9     117 .. 0.84
   2 !    3.2   1.2    0.0046       9.5     134     188 ..     180     235 ..     168     279 .. 0.55

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.1e-09
   TIGR00569  42 akaitLtveEElelvkyYekklldlasalkptlPkevvgtAilyFkRFyLnnsvmeydPkiivltcvFlAcKvee 116
                 + +  +t++EE +  +     + +  ++lk  lP+  v+tA+++F+RFy   +  e+d  ++ + ++ lA+K+ee
  MMETSP1061-20121228|8593_1  25 SLKKGMTSKEESDKRRRTCRFIEEAGRVLK--LPRYAVATAMVFFHRFYACHAFQEHDRFEVAVAALVLAAKTEE 97 
                 555566777777776666677788889999..*****************************************98 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0046
   TIGR00569 134 kaleevLeyEllliqsLkfsLlvhnPyrPleGFllD.iktvlpkleneevlrkiad 188
                 k  e++L  E  +++ + f+L + +Py+ +   +   ++t+    +  +  ++++d
  MMETSP1061-20121228|8593_1 180 KLKERILLLERIILHTIGFELSIDHPYKFFMDQIKKlVRTRKLRYNAAKSAEPTTD 235
                 66788888888888888888888888884433222123444444444444444444 PP

>> TIGR02783  TrbL_P: P-type conjugative transfer protein TrbL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   3.5   9.1e-05      0.19     219     296 ..      71     169 ..      59     171 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 9.1e-05
   TIGR02783 219 laagtntiqallevvilsvvilllvkkipeiaaslvsgasv.....................lgaggavaaaaavagvaaaggaalaaGalsaaagasg 296
                 +a  + + ++ +ev+++++v+++ ++ +p+ ++ +++                           +gga++++ + a+   a+ga+ aaG + aa  + g
  MMETSP1061-20121228|8593_1  71 YACHAFQEHDRFEVAVAALVLAAKTEEAPKKLNTVIQDCYKlktrslqagrlsqqrngggpkETSGGAAGTGGGAAASTGAAGAGTAAGNVTAAHESTG 169
                 446667788899999999999999999999999999999989999999999999999999997777777777777777778888899999988877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1484.88
//
Query:       MMETSP1061-20121228|8591_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.22s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 1552.61
//
Query:       MMETSP1061-20121228|8597_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 324.47
//
Query:       MMETSP1061-20121228|8598_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 620.84
//
Query:       MMETSP1061-20121228|8596_1  [L=2162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.80u 0.16s 00:00:00.96 Elapsed: 00:00:00.61
# Mc/sec: 4678.04
//
Query:       MMETSP1061-20121228|8599_1  [L=738]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (738 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.41
# Mc/sec: 2375.80
//
Query:       MMETSP1061-20121228|8595_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       297  (0.0724037); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1611.66
//
Query:       MMETSP1061-20121228|8605_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 226.27
//
Query:       MMETSP1061-20121228|8603_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1986.12
//
Query:       MMETSP1061-20121228|8607_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1455.88
//
Query:       MMETSP1061-20121228|8612_1  [L=1233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   36.3   1.0    4.3e-09   34.4   0.5    2.1  2  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.5     1e-12   4.3e-09       5      56 ..     110     155 ..     107     156 .. 0.88
   2 ?   -2.3   0.0      0.32   1.3e+03      22      37 ..     764     778 ..     756     781 .. 0.80

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 1e-12
   TIGR01557   5 vWteelhrrFlqAvqklGgedkatPkkIlelmkveklTreqvkSHlQkyrlk 56 
                 +Wt+e+h+ Fl +++ +G+ ++   kk+++ +k+   T+ q + H+Qky++k
  MMETSP1061-20121228|8612_1 110 RWTKEEHEAFLIGIDMYGK-EW---KKVAAKVKT--RTVVQTRTHAQKYFQK 155
                 7******************.**...***544444..38************87 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.32
   TIGR01557  22 GgedkatPkkIlelmk 37 
                  g d+  P +I+++m+
  MMETSP1061-20121228|8612_1 764 EG-DWENPDRINSIME 778
                 45.8999******997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.47
# Mc/sec: 3462.61
//
Query:       MMETSP1061-20121228|8613_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.23    9.6   3.5       0.28    9.4   2.4    1.1  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   2.4   6.9e-05      0.28      58      95 ..      14      51 ..       6      55 .. 0.34

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 6.9e-05
   TIGR03685 58 aaapvaaaaaaaaaaeaaeeekeeeeeeeeekeeeeee 95
                aaap a++   +++ ++++ +++  ++++e+k+e+e+e
  MMETSP1061-20121228|8613_1 14 AAAPGASVVENSSKGANQKMATKSSKQQQEQKQEQEQE 51
                22222222222222222222222222333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|8619_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 551.95
//
Query:       MMETSP1061-20121228|8615_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.6    2.4  21.2      0.034   10.5   8.1    1.6  2  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   1.4       0.2   8.3e+02      69      98 ..      68      97 ..      43     160 .. 0.56
   2 ?   10.5   8.1   8.2e-06     0.034       9     143 ..     502     639 ..     494     684 .. 0.84

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 0.2
   TIGR03319 69 kelkerrkelqklekrlkqkeekldrkkek 98
                +++++  ++ q++   + ++ee+l++ +++
  MMETSP1061-20121228|8615_1 68 NDTESSPNDQQEELAEVPKEEEELEEGDAQ 97
                333333333333333333333333333311 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 8.2e-06
   TIGR03319   9 vvglligyllakkiaekkleeaeeeakkiieeak..keaeakkkealle.akeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekisg 143
                  +g+ i+yl a+  ae+kl++ +ee ++   + k    a++  k++ l+ + ++  ++re +e++l++ ++ ++++++ l q + +l+ k e+ +k++ +l+ + ++le+ +++ e+ +e +e +++e+ ++Le+i +
  MMETSP1061-20121228|8615_1 502 GLGAKIKYLEATVDAERKLRADQEERQEFFAKEKdfAIAKEIGKQMSLQkVIDREIEKREAVEAQLEATKARMETEKQALCQANANLEAKLEAEQKRSYSLKLRMQALENARSKTESDREMYELTVRETIKRLENIVN 639
                 5788899999999999999888888888777666333456666666555156777889999*************************************************************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 2903.76
//
Query:       MMETSP1061-20121228|8621_1  [L=732]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (732 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.30
# Mc/sec: 3220.53
//
Query:       MMETSP1061-20121228|8617_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-06   23.2   0.0      4e-05   21.0   0.0    2.0  2  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
    9.7e-05   18.5   0.0     0.0003   16.9   0.0    1.6  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.9e-08     4e-05       5      52 ..      62     108 ..      59     193 .. 0.77
   2 ?   -0.7   0.0     0.084   1.7e+02      56      76 ..     230     250 ..     225     255 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.9e-08
   TIGR00668   5 ligdlhgcydelqlllervefdpakdtlyltgdlvargdkslevlryv 52 
                 + gd+hg y +l  l+e   f p+ + l+l gd v rg++slev+ ++
  MMETSP1061-20121228|8617_1  62 ICGDVHGQYTDLLRLFEYGGFPPEANYLFL-GDYVDRGKQSLEVVSLL 108
                 68************************9998.9***********98764 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.084
   TIGR00668  56 gdavrlvlgnhdlhllavalg 76 
                 gd vr  l  hdl l+  a +
  MMETSP1061-20121228|8617_1 230 GDVVRQFLRRHDLDLVVRAHQ 250
                 899***********9987765 PP

>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.4e-07    0.0003     180     263 ..      58     128 ..      46     136 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.4e-07
   TIGR04075 180 GPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvms..mvkagaalcvpGnhee 263
                  P  i GdvhG +++l +l+e  G+              +pe  + +flGd+vdrG++s +v+ l  +  +    + + ++Gnhe 
  MMETSP1061-20121228|8617_1  58 APIKICGDVHGQYTDLLRLFEYGGF--------------PPE-ANYLFLGDYVDRGKQSLEVVSLLFAykIKYPENFFLLRGNHEC 128
                 5889999999999999999888777..............233.4579***************999765114455777889999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.34
# Mc/sec: 1234.49
//
Query:       MMETSP1061-20121228|8618_1  [L=1064]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1064 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 3510.91
//
Query:       MMETSP1061-20121228|8622_1  [L=949]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-05   19.4   0.0      6e-05   18.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    6.6e-05   20.3   0.0    0.00016   19.0   0.0    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.019   12.9   0.2      0.039   11.9   0.2    1.5  1  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   4.4e-08     6e-05      86     113 ..     265     292 ..     255     311 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 4.4e-08
   TIGR03903  86 lqvLDalaaahdaGvvhRDLkPqnimvs 113
                   +L a a  h++G+vhRD+kP n+m  
  MMETSP1061-20121228|8622_1 265 REILQAAAELHKRGIVHRDIKPSNVMCR 292
                 57899********************974 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.2e-07   0.00016      89     127 ..     257     295 ..     244     298 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.2e-07
   TIGR03724  89 eekelellkevGelvgklHkagivhgDlttsNiivkddk 127
                 ++  +++l+e+ +++++lHk givh D+ +sN++ ++dk
  MMETSP1061-20121228|8622_1 257 QTFMQKTLREILQAAAELHKRGIVHRDIKPSNVMCRSDK 295
                 33334899**************************99887 PP

>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   2.9e-05     0.039       5      24 ..     548     567 ..     546     573 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.9e-05
   TIGR02605   5 eYrCtaCghefevlqkmsdd 24 
                 e+rC++Cg+ f ++++++++
  MMETSP1061-20121228|8622_1 548 EFRCPSCGRVFHDWRSCHQH 567
                 8***************9983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (949 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.41
# Mc/sec: 3055.06
//
Query:       MMETSP1061-20121228|8620_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1078.87
//
Query:       MMETSP1061-20121228|8626_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 602.75
//
Query:       MMETSP1061-20121228|8623_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 591.08
//
Query:       MMETSP1061-20121228|8629_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 491.96
//
Query:       MMETSP1061-20121228|8630_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.14s 00:00:00.65 Elapsed: 00:00:00.45
# Mc/sec: 2692.58
//
Query:       MMETSP1061-20121228|8625_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-15   52.3   0.5    7.9e-15   52.3   0.3    1.8  2  TIGR03052 PS_I_psaI: photosystem I reaction center subunit VIII


Domain annotation for each model (and alignments):
>> TIGR03052  PS_I_psaI: photosystem I reaction center subunit VIII
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.1      0.48     2e+03       3       6 ..      52      55 ..      52      55 .. 0.91
   2 !   52.3   0.3   1.9e-18   7.9e-15       1      31 []      90     120 ..      90     120 .. 0.94

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.48
   TIGR03052  3 LPsI 6 
                LPsI
  MMETSP1061-20121228|8625_1 52 LPSI 55
                9*99 PP

  == domain 2    score: 52.3 bits;  conditional E-value: 1.9e-18
   TIGR03052   1 afLPsIFVPLVGLvfPAvfmaLlflyIeaed 31 
                 a+LP+I VPLVG+vfPA++maL+fly +++d
  MMETSP1061-20121228|8625_1  90 AYLPAIMVPLVGIVFPAFSMALFFLYSQQDD 120
                 7*************************88775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 670.94
//
Query:       MMETSP1061-20121228|8627_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 1336.92
//
Query:       MMETSP1061-20121228|8631_1  [L=1102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       288  (0.0702097); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.14s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 3729.54
//
Query:       MMETSP1061-20121228|8635_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|8634_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   18.6   1.0      0.013   12.0   0.0    2.7  3  TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL


Domain annotation for each model (and alignments):
>> TIGR03300  assembly_YfgL: outer membrane assembly lipoprotein YfgL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   3.1e-06     0.013     145     175 ..      67      97 ..      58     126 .. 0.85
   2 !    4.3   0.0   0.00071       2.9     288     340 ..     132     190 ..     103     194 .. 0.63
   3 ?   -1.4   0.0     0.037   1.5e+02     151     205 ..     402     453 ..     382     457 .. 0.49

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.1e-06
   TIGR03300 145 nglvvvrtsdgrvtaldaetGeklWsyerev 175
                 +++ +v+t  ++v+a++a +Ge+ W+y+ e+
  MMETSP1061-20121228|8634_1  67 GKHALVTTVGATVYAFNAYSGEQAWVYQPEA 97 
                 5678999*******************99765 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.00071
   TIGR03300 288 kgkvvaldrssGselWkndeLknrkLtapall..gkyvvv...gD..feGylhlLdredG 340
                 +++v+ald  +G+elW +d+L+  + + p +   g yv++   +D  ++Gy  +Ld ++G
  MMETSP1061-20121228|8634_1 132 SSRVIALDM-EGNELWVSDDLEGVTAGCPQVSsdGAYVYLthnADglSNGYFTILDGATG 190
                 456666664.46666666666666666666653333444322212223566666666655 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.037
   TIGR03300 151 rtsdgrvtaldaetGeklWsyerevpaLtlRgsaspviadgvvlvgfanGklval 205
                 ++ +g +++ +  +   +W++ ++   +t+ g+++ +  ++v++v+   G ++a+
  MMETSP1061-20121228|8634_1 402 ESDNGLLHGANFLDVTDMWTMPMN---FTVFGEMALTPRSDVLIVADTRGVITAY 453
                 444444444444444444444332...3334444444444444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 2424.20
//
Query:       MMETSP1061-20121228|8639_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 502.82
//
Query:       MMETSP1061-20121228|8637_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.38
# Mc/sec: 1090.65
//
Query:       MMETSP1061-20121228|8640_1  [L=1077]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1077 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.37
# Mc/sec: 3841.95
//
Query:       MMETSP1061-20121228|8642_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2257.01
//
Query:       MMETSP1061-20121228|8638_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-10   36.4   0.0    1.5e-09   35.3   0.0    1.5  2  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    9.4e-08   29.1   0.0    1.3e-07   28.7   0.0    1.1  1  TIGR01141 hisC: histidinol-phosphate transaminase
    2.9e-07   27.5   0.0    4.3e-07   27.0   0.0    1.2  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    4.2e-07   27.1   0.0      5e-07   26.9   0.0    1.1  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    0.00015   18.6   0.0    0.00024   18.0   0.0    1.2  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    0.00018   18.3   0.0    0.00029   17.7   0.0    1.2  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    0.00038   17.2   0.0     0.0005   16.8   0.0    1.1  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
     0.0019   15.0   0.0     0.0022   14.8   0.0    1.2  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.5   7.8e+02     189     198 ..      11      20 ..       7      21 .. 0.89
   2 !   35.3   0.0   2.9e-12   1.5e-09      65     207 ..     142     303 ..     135     319 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.5
   TIGR01140 189 VlrSltKffg 198
                 +lrS tKffg
  MMETSP1061-20121228|8638_1  11 LLRSPTKFFG 20 
                 69*******8 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 2.9e-12
   TIGR01140  65 aesvlavnGaqeaiqllprllapkrvlvlaptyseyaralraagaevvels.............dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpaeslaalaea......lpglvVlrSltKffglaGlRlGfv 207
                   + l + G   ++  l+r  + k+  v++pt++++   +++ag+ev+++               ++++++  e   +l+ +  +NPtG   + e+ +++ e++k+++ l   D A+  f   + + + a+        + +  ++S+ K fgl G R+G +
  MMETSP1061-20121228|8638_1 142 GTQALSGTGGLRVFGELMRRHGHKHIYVPNPTWGNHIPIFTNAGLEVRKYRyydsensdldfagVIDDIKNMPEGSIILLHACAHNPTGMDPTMEQWKEMSETIKKHKLLPFFDCAYQGFASGDPIEDAAAVrmfvedGHLISMVQSFSKNFGLYGQRIGAL 303
                 567888999999999********************************************9666644444444488888888899**********************************999988666666555666434445679***************86 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   2.5e-10   1.3e-07      91     257 ..     158     347 ..     136     386 .. 0.68

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 2.5e-10
   TIGR01141  91 aflepg.davlvleptysmYevsakiagaevkevplked..gqedleavle..aakekvklvfl.asPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee.....asvlellaeypnlv.vlrTlSKafgLAglRvGyaia.......naeiiealekvrapynvssl..aleaavaalrdsd 257
                  +   g ++++v++pt+  +  + + ag ev+++++ ++     d++ v +  ++  +  ++ l a  +nPtG   + e+ +++ e+  + + l   D AY  F++      a ++ +  e  +l+ +++++SK fgL g R+G + +        + ++++++ v+ p   + +   + + ++ l+d +
  MMETSP1061-20121228|8638_1 158 LMRRHGhKHIYVPNPTWGNHIPIFTNAGLEVRKYRYYDSenSDLDFAGVIDdiKNMPEGSIILLhACAHNPTGMDPTMEQWKEMSETIkKhKLLPFFDCAYQGFASGdpiedAAAVRMFVEDGHLIsMVQSFSKNFGLYGQRIGALSVvgsneeeAKRVVSQMKLVIRPMYSNPPrqGARLVTTILEDPK 347
                 55556668999**********************999888554455555555332333333444424469**********9999999997679999**********987887755566665666666489***************8643222222234578888877777544443003344455566655 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   8.4e-10   4.3e-07     168     262 ..     213     308 ..     194     327 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 8.4e-10
   TIGR03542 168 lpeekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslPksi...yeiegakecaieirsfsktlGftGvrlg.ytvvPk 262
                 +pe + + ++  C   nPtG   t eq ke+ +  k+++ l +fd+ay+ f s + +  +      +e+ + +++ ++sfsk+ G+ G r+g ++vv  
  MMETSP1061-20121228|8638_1 213 MPEGS-IILLHAC-AHNPTGMDPTMEQWKEMSETIKKHKLLPFFDCAYQGFASGDPIEDAAavrMFVEDGHLISM-VQSFSKNFGLYGQRIGaLSVVGS 308
                 44444.5555556.579************************************9988765311244777777665.9*************973566654 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   9.7e-10     5e-07     120     304 ..     164     357 ..      95     408 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 9.7e-10
   TIGR01265 120 ganiLvPrPgfplYetlakalglevrkydllpekdweidldel.ealaD..ektvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgd..atfvplaklaskvPvls.lggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgA..lpdile..ktpkeffekki 304
                  ++i vP P++ +   + +  glevrky     ++ ++d+ ++ + +++  e   +l+     nP+G   + +  +++ e+ +k+kll + D  Y+ ++ gd  +   ++  + +   ++s +++ sk++   G r+G l vv  ++   + v++ +k +++  + ++   qgA  +  ile  k  ++f+++  
  MMETSP1061-20121228|8638_1 164 HKHIYVPNPTWGNHIPIFTNAGLEVRKYRYYDSENSDLDFAGViDDIKNmpEGSIILLHACAHNPTGMDPTMEQWKEMSETIKKHKLLPFFDCAYQGFASGDpiEDAAAVRMFVEDGHLISmVQSFSKNFGLYGQRIGALSVVGSNEEEAKRVVSQMKLVIRP-MYSNPPRQGArlVTTILEdpKLTQDFLDQCK 357
                 4689***********************************987525666521344444555678**************************************98878889999999999886368****************99999888888777777665543.3334444555436667762234467776654 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   4.7e-07   0.00024      92     218 ..     169     303 ..     156     323 .. 0.70

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.7e-07
   TIGR03537  92 ygtpgypvyerGalfaggealkvklkkedgflleldaveeai..l.retkivwinyphnptGaeapasylkevaelareygiilasdecyaeiysee..kpasvlevglen...vlafhslskrsGmtGyrsgfl 218
                 +++p++  +      ag+e  k +    ++  l+   v ++i  + + + i+  +  hnptG   + + +ke++e  +++ ++ + d  y    s++  + a+++++ +e+   + +++s sk  G+ G r g l
  MMETSP1061-20121228|8638_1 169 VPNPTWGNHIPIFTNAGLEVRKYRYYDSENSDLDFAGVIDDIknMpEGSIILLHACAHNPTGMDPTMEQWKEMSETIKKHKLLPFFDCAYQGFASGDpiEDAAAVRMFVEDghlISMVQSFSKNFGLYGQRIGAL 303
                 555555555555555666666666666666666655555554112134455566789**************************************995423344444333322255789***********98876 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   5.7e-07   0.00029      95     223 ..     166     302 ..     152     329 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 5.7e-07
   TIGR03947  95 evvvvdpayhslselavalgakvrrwplaaerdfrpdlddlralvtdrtr...lvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvydaeplpeps....aaadrvisf.gtlskafGlpGlrvGW 223
                 ++ v +p++ +   + + +g +vr+++   +++   d + + + +++ ++   +++    hnPtG+  + ++ +e+ e++++ +    +d a++ ++   +    ++    ++ ++ is+   +sk fGl G r+G 
  MMETSP1061-20121228|8638_1 166 HIYVPNPTWGNHIPIFTNAGLEVRKYRYYDSENSDLDFAGVIDDIKNMPEgsiILLHACAHNPTGMDPTMEQWKEMSETIKKHKLLPFFDCAYQGFASGDPIEDAAAvrmfVEDGHLISMvQSFSKNFGLYGQRIGA 302
                 477888888888889999999999999988887777777666666555442113344679*********************************999876543322221111456789986379************95 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.8e-07    0.0005     122     321 ..     165     377 ..     147     409 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 9.8e-07
   TIGR01264 122 envlvPrPGfplyetlakaldievklynlladedweidlke.leslid..dktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkg..atflalaslssevPils.lgGlakrllvPGWrlGWliihdrkgvlrdvkdGlkklsqrilGpntlvqGa..lkeilr..ktPqeyfdg...vvsvlesnadlvyealaev 321
                 +++ vP+P +  +  +  + ++ev+ y     e+ ++d+   ++ +++  +   +l+ +   nP+G   + +  +e+    +++kl  + d  y+++   +      a+  +  +  ++s ++  +k++ + G r+G l ++  ++   +  +   kl  r + +n   qGa  ++ il+  k  q+++d+   + + ++   +l++e l+ev
  MMETSP1061-20121228|8638_1 165 KHIYVPNPTWGNHIPIFTNAGLEVRKYRYYDSENSDLDFAGvIDDIKNmpEGSIILLHACAHNPTGMDPTMEQWKEMSETIKKHKLLPFFDCAYQGFASGDpiEDAAAVRMFVEDGHLISmVQSFSKNFGLYGQRIGALSVVGSNEEEAKRVVSQMKLVIRPMYSNPPRQGArlVTTILEdpKLTQDFLDQckgMADRINLMRTLLHEKLTEV 377
                 5799*****************************99999875255666521333444456678***********************************9888665667777888877777626899**************99998888877777777888888999999999975566775223458888751114566666666666666666 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.3e-06    0.0022     153     249 ..     206     303 ..     167     423 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.3e-06
   TIGR03540 153 dldaipedvlkkakilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfde...ykalsflevdgakdvaielhslsktynmtGWrigfa 249
                  +d+i  ++ + + il      nPt+   + e +ke+ e  k+++++  +d ay+  +  +     a   + v++ + +++ ++s+sk + + G rig  
  MMETSP1061-20121228|8638_1 206 VIDDIK-NMPEGSIILLHACAHNPTGMDPTMEQWKEMSETIKKHKLLPFFDCAYQGFASGDpieDAAAVRMFVEDGHLISM-VQSFSKNFGLYGQRIGAL 303
                 445543.344455556666789*********************************99875422123334455677777776.89*************963 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 1944.64
//
Query:       MMETSP1061-20121228|8643_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 509.10
//
Query:       MMETSP1061-20121228|8644_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.008   13.9   0.0      0.014   13.1   0.0    1.3  1  TIGR03232 benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit


Domain annotation for each model (and alignments):
>> TIGR03232  benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.5e-06     0.014      43      79 ..      84     120 ..      77     133 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.5e-06
   TIGR03232  43 edpqseisliyypnrqgledrvfrikterssatvpdt 79 
                 + p++  s+i+  +++ l + + ri te+s  t pd+
  MMETSP1061-20121228|8644_1  84 NWPNTPTSMIFLQSKTSLHESLARIETEKSPNTAPDA 120
                 4599999****************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1942.13
//
Query:       MMETSP1061-20121228|8641_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-15   55.3   0.5    1.4e-15   55.2   0.4    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.4   3.4e-19   1.4e-15       1      73 [.       1      70 [.       1     112 [. 0.85

  Alignments for each domain:
  == domain 1    score: 55.2 bits;  conditional E-value: 3.4e-19
   TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdfvvvm 73
                +++ +Ktl ++++++d+ep++t+ ++K+ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +  + ++
  MMETSP1061-20121228|8641_1  1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
                8999*******************************...**************************988765443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 841.43
//
Query:       MMETSP1061-20121228|8645_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.33
# Mc/sec: 1123.91
//
Query:       MMETSP1061-20121228|8646_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.08s 00:00:00.20 Elapsed: 00:00:00.34
# Mc/sec: 578.42
//
Query:       MMETSP1061-20121228|8647_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.091    9.0  12.0       0.11    8.7   8.3    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   8.3   2.7e-05      0.11     306     376 ..     157     229 ..     149     238 .] 0.35

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 2.7e-05
   TIGR02442 306 lkhRrrrkpfeeeqekeekkleekkeeak.pdeekedeseekekeeskkqe..eeepgkddekeedekeeaeee 376
                 l  R+rr +  +++ ++e+k ++kk +++ ++ +k+d++ +++ke++kk++  +++ +k+d+++ed +++ +++
  MMETSP1061-20121228|8647_1 157 LYLRKRRLAAVDADDDDEEKGKKKKGKKDkDKDDKKDKK-KDKKEDNKKKDkkKDKKKKKDDSDEDGSDDGSGD 229
                 444555544444423333333333333330333333332.2222222222212233333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       385  (0.0938567); expected 82.0 (0.02)
Passed bias filter:                      196  (0.0477816); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 872.59
//
Query:       MMETSP1061-20121228|8651_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.30
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|8652_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-12   44.4   0.1    3.5e-12   43.8   0.0    1.2  1  TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
    5.9e-07   27.0   0.2      4e-06   24.2   0.1    2.0  1  TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 family
    3.4e-05   20.7   0.0    4.4e-05   20.3   0.0    1.1  1  TIGR03965 actino_glycTran: mycofactocin system glycosyltransferase
    0.00012   18.8   0.2    0.00017   18.4   0.1    1.1  1  TIGR03111 glyc2_xrt_Gpos1: putative glycosyltransferase, TIGR03111 family
    0.00013   19.0   0.0    0.00017   18.5   0.0    1.2  1  TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB
     0.0039   14.3   0.1      0.006   13.7   0.1    1.3  1  TIGR04009 wcaE: colanic acid biosynthesis glycosyl transferase WcaE


Domain annotation for each model (and alignments):
>> TIGR03937  PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   5.1e-15   3.5e-12      41     129 ..      63     156 ..      46     174 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 5.1e-15
   TIGR03937  41 leevpkvsllvpcynegenveetisallk.....l.kypnleviainDGskDdtaeildklakkedrlrvihleenqGkaaalneglkaakseyl 129
                 +   p + +l+p+yne+  +e t+++  +     l +  + e+++++DGs+D t ++++++ ++ +  +v+  +en+Gk aa+  g+++ ++++ 
  MMETSP1061-20121228|8652_1  63 TIYNPRLVILIPAYNEEGRIELTLKSYQDfllrsLsNDIKSEIVIVDDGSSDATLDVINNFSSEIPIYTVVM-KENKGKGAAIARGVQHISQKMY 156
                 44568899***************987543111112123468*************************555555.5*************99887765 PP

>> TIGR04182  glyco_TIGR04182: glycosyltransferase, TIGR04182 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   5.9e-09     4e-06       3      82 ..      70     163 ..      68     324 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 5.9e-09
   TIGR04182   3 cvliPtlneaatigevieefkelGy........edilvidGnstddtqeiakeaGar.....vvaqsGkGkGqavreavelidkp.yvllldgd 82 
                 ++liP++ne+  i   ++++++  +        ++i+++d +s+d+t ++ ++  ++     vv+++ kGkG+a++ +v++i+++ y  + d d
  MMETSP1061-20121228|8652_1  70 VILIPAYNEEGRIELTLKSYQDFLLrslsndikSEIVIVDDGSSDATLDVINNFSSEipiytVVMKENKGKGAAIARGVQHISQKmYESFADDD 163
                 79********99988777666543211111112689**************999887533333899***************99876144455544 PP

>> TIGR03965  actino_glycTran: mycofactocin system glycosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   6.4e-08   4.4e-05      77     164 ..      70     163 ..      35     172 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 6.4e-08
   TIGR03965  77 tvVvPvrdrpaglarllaa.....lealdyprdrlevivVDDgSedpvetaaar.aaeltvrviRhdrsqGpaaaRNaGlraartefv.AFlDsD 164
                  + +P  + + +++  l++     l++l+      e+++VDDgS+d++ +   + ++e+++ ++  ++++G+ aa   G++  ++++   F D+D
  MMETSP1061-20121228|8652_1  70 VILIPAYNEEGRIELTLKSyqdflLRSLSNDIK-SEIVIVDDGSSDATLDVINNfSSEIPIYTVVMKENKGKGAAIARGVQHISQKMYeSFADDD 163
                 567777777777777777622222233333333.79***********998877779************************998888753788888 PP

>> TIGR03111  glyc2_xrt_Gpos1: putative glycosyltransferase, TIGR03111 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   2.4e-07   0.00017      39     129 ..      57     150 ..      45     176 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 2.4e-07
   TIGR03111  39 lkklkaigklPeitiiiPvynsedtlknciesikn....ssypkklidvilvnnqssddsfkvfaraqkefpelslrylnsdqGkakalnaaiyk 129
                 +   +++ + P++ i+iP yn e  ++  ++s ++    s  +  + ++++v++ ssd + +v  ++  e p      ++ ++Gk  a+  ++ +
  MMETSP1061-20121228|8652_1  57 STTYDTTIYNPRLVILIPAYNEEGRIELTLKSYQDfllrSLSNDIKSEIVIVDDGSSDATLDVINNFSSEIPIY-TVVMKENKGKGAAIARGVQH 150
                 4556677789**************9999999988722212334445689*******************999865.5679999*****99988755 PP

>> TIGR03469  HpnB: hopene-associated glycosyltransferase HpnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   2.5e-07   0.00017      41     134 ..      63     154 ..      44     200 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 2.5e-07
   TIGR03469  41 eaw.PevvavvPardeaevigeaves...lleqdY..pGklkvilvDDeseDgtaeiarevaealdkadrltvvsgkelpkgWsGklWaveqGleaakal 134
                 +++ P++v+++Pa +e   i+ +++s   +l ++   + k ++++vDD s+D+t ++ ++ +++++     tvv  ++      Gk  a+ +G+++ +++
  MMETSP1061-20121228|8652_1  63 TIYnPRLVILIPAYNEEGRIELTLKSyqdFLLRSLsnDIKSEIVIVDDGSSDATLDVINNFSSEIPI---YTVVMKEN-----KGKGAAIARGVQHISQK 154
                 3445*****************999985553444440155668***************9999998874...35555444.....35555666666665554 PP

>> TIGR04009  wcaE: colanic acid biosynthesis glycosyl transferase WcaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   8.7e-06     0.006      18      90 ..      87     161 ..      69     193 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8.7e-06
   TIGR04009  18 ktwrslrnlardpelsfewivvdggsndgtaefleklngefnlrfv.sekdkgiydamnkgia.laqgryalfln 90 
                 k+++ +   + +++++ e ++vd gs d t + +++   e  +  v  +++kg   a+ +g++ ++q  y  f +
  MMETSP1061-20121228|8652_1  87 KSYQDFLLRSLSNDIKSEIVIVDDGSSDATLDVINNFSSEIPIYTVvMKENKGKGAAIARGVQhISQKMYESFAD 161
                 34444333455789**************************99876515567899999999996356666766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.53
# Mc/sec: 809.37
//
Query:       MMETSP1061-20121228|8656_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1175.90
//
Query:       MMETSP1061-20121228|8653_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1935.84
//
Query:       MMETSP1061-20121228|8657_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 780.94
//
Query:       MMETSP1061-20121228|8654_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1973.40
//
Query:       MMETSP1061-20121228|8660_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 1126.62
//
Query:       MMETSP1061-20121228|8658_1  [L=797]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   11.3   0.0      0.092   10.4   0.0    1.3  1  TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR02423  protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   2.3e-05     0.092      30     118 ..     497     590 ..     487     603 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.3e-05
   TIGR02423  30 lveddaegervklegrvlDGdg....apvaDallEiwqadaaGrf.nsaadkraeakeaeFrgfgRvatdesgevtfetvkPGavpakdGakea 118
                 ++ + ++++ ++   ++ DG g    ++  D ++ +wq+  +    n++++++++++++e  +f  +  + +  ++++ + PG+v  ++ ++++
  MMETSP1061-20121228|8658_1 497 VLGPRSDPSIINAVCSLEDGGGfgfaTASGDGIVRVWQTRNDDSSsNNSNNSNTSNSNNEAMAFRNCLGHTRSVLALDCLSPGRVLVSASKDST 590
                 555666666666677777766522325668********9766555044455557777888999999999****************988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 2768.30
//
Query:       MMETSP1061-20121228|8661_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-31  106.1   1.3    5.4e-31  105.4   0.9    1.2  1  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.9   1.3e-34   5.4e-31     209     289 ..     265     346 ..     255     348 .. 0.89

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 1.3e-34
   TIGR00811 209 tnepprsav.qnlfhwgrvvfslgvlcfalavtlealfkgkttmwefipngvavvlfvllmslvgllegmqiaffavakipk 289
                  +ep r +v q +f w rvvfslgvl fa+avtl alf+g+ttmw+++p+ v+vvlf +lm+ vg++egmqiaffav + p 
  MMETSP1061-20121228|8661_1 265 NKEPARCSVlQSFFFWTRVVFSLGVLGFAFAVTLSALFRGQTTMWKSVPKAVSVVLFFVLMCFVGMMEGMQIAFFAVLNYPE 346
                 358989665499*****************************************************************98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 1924.84
//
Query:       MMETSP1061-20121228|8659_1  [L=828]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.08   10.2   0.1       0.12    9.6   0.1    1.1  1  TIGR03078 CH4_NH3mon_ox_C: methane monooxygenase/ammonia monooxygenase, subunit C


Domain annotation for each model (and alignments):
>> TIGR03078  CH4_NH3mon_ox_C: methane monooxygenase/ammonia monooxygenase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1     3e-05      0.12      17      66 ..      88     137 ..      79     149 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 3e-05
   TIGR03078  17 lalavfvvwyervyaysagldslepefekiwmgllrvelvvealaalilw 66 
                   +a++  w++  y +++  + le e e  w g++ +   v ++ a++ w
  MMETSP1061-20121228|8659_1  88 QRFALMCLWFQSDYDWKHQNNWLEEEDECTWWGVFCTVAAVSPTEASSAW 137
                 568999*****************************999999999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (828 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.42
# Mc/sec: 2602.07
//
Query:       MMETSP1061-20121228|8665_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 1079.91
//
Query:       MMETSP1061-20121228|8662_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0068   13.1   0.0      0.015   12.0   0.0    1.5  1  TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating)


Domain annotation for each model (and alignments):
>> TIGR00873  gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   3.6e-06     0.015      32     102 ..     195     263 ..     172     269 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.6e-06
   TIGR00873  32 kektdellkeeakgkklvgaesieefvkslekPrkilllvkaGaavdavieellpllekgdiiidGGnsly 102
                 ++ + e++ke+a g  +   ++++ +  ++++P k ++ +  Ga v + i  +  llek d i+ GG   +
  MMETSP1061-20121228|8662_1 195 TAGVTEFMKESAAG--FLLDKELKYLQGAVDEPVKPMMAIVGGAKVSTKIPVIESLLEKCDTILVGGGMIF 263
                 55677899985555..4556789999999***********************************9998766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1743.86
//
Query:       MMETSP1061-20121228|8666_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 1504.68
//
Query:       MMETSP1061-20121228|8667_1  [L=1092]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1092 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.42
# Mc/sec: 3431.72
//
Query:       MMETSP1061-20121228|8663_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 2847.19
//
Query:       MMETSP1061-20121228|8664_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-09   32.8   0.0     0.0098   13.9   0.0    4.9  6  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.13   5.5e+02      12      33 ..     230     251 ..     227     253 .. 0.82
   2 ?   -1.4   0.0      0.17   6.9e+02      11      33 ..     303     325 ..     297     326 .. 0.81
   3 ?    1.6   0.0      0.02        81       4      25 ..     387     408 ..     385     412 .. 0.85
   4 !   10.0   0.0     4e-05      0.16       1      34 [.     524     558 ..     524     559 .. 0.90
   5 !   13.9   0.0   2.4e-06    0.0098       2      34 ..     561     593 ..     560     594 .. 0.95
   6 ?   -2.7   0.0      0.45   1.8e+03       7      23 ..     601     617 ..     601     619 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.13
   TIGR00756  12 kagrveeAlelfdeMkergivP 33 
                 ++ ++++  ++ +eMke  ++P
  MMETSP1061-20121228|8664_1 230 QQDETDDSPSVSREMKELFFSP 251
                 567888999999****998887 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.17
   TIGR00756  11 ckagrveeAlelfdeMkergivP 33 
                 +kag+v   ++l+ + k+r+  P
  MMETSP1061-20121228|8664_1 303 GKAGNVGRTIQLLSLRKSRDYPP 325
                 89******999999988888776 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.02
   TIGR00756   4 ntlisglckagrveeAlelfde 25 
                 n +++ +++ gr  ++  +f +
  MMETSP1061-20121228|8664_1 387 NRMLNTFARTGRSAKMTHYFYR 408
                 679**********999999876 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 4e-05
   TIGR00756   1 vtyntlisglckagrveeAlelf.deMkergivPd 34 
                 ++y++l++ ++++g++  A+ ++ + M +++i+Pd
  MMETSP1061-20121228|8664_1 524 ISYSILMRVCVNRGSLWRAMHILdEVMPANKIKPD 558
                 59*********************555699999999 PP

  == domain 5    score: 13.9 bits;  conditional E-value: 2.4e-06
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPd 34 
                 +yntl+ gl+k g+v  ++e+ ++++++g+ P+
  MMETSP1061-20121228|8664_1 561 AYNTLLIGLSKVGDVPTMKEYTRQLLSNGLTPT 593
                 7*****************************997 PP

  == domain 6    score: -2.7 bits;  conditional E-value: 0.45
   TIGR00756   7 isglckagrveeAlelf 23 
                 i++l + g+v  A+ l 
  MMETSP1061-20121228|8664_1 601 IDSLLNLGDVGNAITLC 617
                 89999****99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 2827.77
//
Query:       MMETSP1061-20121228|8670_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-08   31.2   0.4    1.3e-07   30.0   0.3    1.6  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase
     0.0088   14.2   0.4      0.026   12.7   0.3    1.8  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
  ------ inclusion threshold ------
      0.029   12.6   2.3      0.067   11.5   1.6    1.6  1  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.3   9.4e-11   1.3e-07       4     144 ..      87     256 ..      84     264 .. 0.67

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 9.4e-11
   TIGR00401   4 tfalGCfWgveklfr.........kidgvektkvGylngktenPt....yeevCs....gdtghaevvkveydpkvvsleeLldvffevidPttanrqg.nDkGtqyrsgi.....yalsdedekaaeaskerlqe.......sakykkkivteiekae.nfyeaeeyhqqy 144
                 +f++GCfW +++ f          + +  +  ++Gy++gk ++      y++  +    g+ gh evv ++  +++++  ++ +++f+ ++P t+ r    D+G +yrs i       + +  + +a+a+k  ++          + +k++v    +++ +fy+ e yhq +
  MMETSP1061-20121228|8670_1  87 YFGVGCFWHIQHEFVeqgekeilgRGPNQYTSAAGYAGGKATDKEgrvcYHNFQGiadyGKLGHGEVVGMNIPQSKIG--DFSELYFSLYNPKTKDRVDpMDRGAEYRSLIglpggMKHASYPSVEAAAEKAGYKLlegkgndPDTLGKQVVYVYDSIKfPFYQGEVYHQYH 256
                 8*************84433322222244578899****9887765455655443233348999*******99999986..88999*******998886516********88444443343333333333333333232533333445677888888887689****999965 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.3   1.9e-05     0.026       6      42 ..      47      83 ..      43      85 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.9e-05
   TIGR02811  6 kadlsRRdLLkglavgaaagavaaatgrvasasaaae 42
                 a+ sRR+LL+++ + +a++ + ++ ++va a  +++
  MMETSP1061-20121228|8670_1 47 VATNSRRNLLRAAVALSAGALLGGVNPQVALADDDVD 83
                5789*******86665665556666789988887765 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.6   4.9e-05     0.067       2      27 ..      51      76 ..      50      78 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.9e-05
   TIGR01409  2 sRRdFLkaa.aaagaaaglglllpspa 27
                sRR+ L+aa a+ ++a+ +g+  p++a
  MMETSP1061-20121228|8670_1 51 SRRNLLRAAvALSAGALLGGV-NPQVA 76
                9********988888888874.33444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1417.66
//
Query:       MMETSP1061-20121228|8673_1  [L=698]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-33  109.5  51.6      1e-06   26.2   0.1   16.0 16  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat
  ------ inclusion threshold ------
      0.048    9.9   0.0      0.078    9.2   0.0    1.2  1  TIGR01804 BADH: betaine aldehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.1    0.0015       3.1      12      25 ..     242     255 ..     241     256 .. 0.83
   2 !    5.3   1.0    0.0017       3.5      16      25 ..     271     280 ..     271     281 .. 0.91
   3 !    3.7   0.3    0.0054        11       1      24 [.     282     304 ..     282     306 .. 0.92
   4 !    3.5   0.1    0.0067        14       1      16 [.     307     321 ..     307     327 .. 0.93
   5 ?    2.0   0.1     0.019        39       1      24 [.     332     354 ..     332     356 .. 0.80
   6 !    6.5   0.0   0.00074       1.5       1      24 [.     357     379 ..     357     379 .. 0.92
   7 !   21.1   0.4     2e-08   4.2e-05       1      26 []     382     406 ..     382     406 .. 0.97
   8 ?    1.3   0.0     0.032        65       1      21 [.     407     426 ..     407     429 .. 0.75
   9 !   14.5   0.1   2.4e-06    0.0049       1      25 [.     432     455 ..     432     455 .. 0.98
  10 !    9.6   0.0   7.9e-05      0.16       1      24 [.     457     479 ..     457     480 .. 0.95
  11 !   26.2   0.1     5e-10     1e-06       1      26 []     482     506 ..     482     506 .. 0.97
  12 !    9.4   0.1   9.2e-05      0.19       2      25 ..     533     555 ..     533     556 .. 0.82
  13 !    5.5   0.0    0.0015       3.2       1      21 [.     557     576 ..     557     576 .. 0.96
  14 !   13.1   0.5   6.5e-06     0.013       1      24 [.     582     604 ..     582     606 .. 0.95
  15 !    5.6   0.0    0.0014         3       1      22 [.     607     627 ..     607     629 .. 0.93
  16 ?   -1.0   0.0      0.17   3.5e+02      20      25 ..     655     660 ..     655     661 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0015
   TIGR02167  12 DlSnfdTsnVTnMs 25 
                 +l  ++Ts  T+M+
  MMETSP1061-20121228|8673_1 242 PLNCWNTSIITDMT 255
                 6666*********7 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0017
   TIGR02167  16 fdTsnVTnMs 25 
                 +dTs VT M+
  MMETSP1061-20121228|8673_1 271 WDTSRVTVMD 280
                 *******997 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.0054
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnM 24 
                 MF++ ss+++ +l  +++ nV  M
  MMETSP1061-20121228|8673_1 282 MFADASSFNQ-PLHYWNVTNVKSM 304
                 9*********.**********888 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.0067
   TIGR02167   1 MFsgCssLtsLDlSnf 16 
                 MFs+ ss+++ +++++
  MMETSP1061-20121228|8673_1 307 MFSSASSFNQ-PIDSW 321
                 **********.****9 PP

  == domain 5    score: 2.0 bits;  conditional E-value: 0.019
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnM 24 
                 MF+  + ++  +l +++++ VT  
  MMETSP1061-20121228|8673_1 332 MFYKATRFNH-PLGSWNVAGVTST 354
                 7777777777.899*****99976 PP

  == domain 6    score: 6.5 bits;  conditional E-value: 0.00074
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnM 24 
                 MFs+ +++++ ++  +++  V  M
  MMETSP1061-20121228|8673_1 357 MFSYAEQFNQ-PIGDWNVQRVRKM 379
                 **********.******9888766 PP

  == domain 7    score: 21.1 bits;  conditional E-value: 2e-08
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMss 26 
                 MF + s++++ +l+++dT +VT M+s
  MMETSP1061-20121228|8673_1 382 MFEHASAFNQ-PLDGWDTTSVTSMTS 406
                 9*********.*************86 PP

  == domain 8    score: 1.3 bits;  conditional E-value: 0.032
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnV 21 
                 MFs  + ++  +l+++++ nV
  MMETSP1061-20121228|8673_1 407 MFSKAKTFNH-PLEKWNVQNV 426
                 6666666666.89*****999 PP

  == domain 9    score: 14.5 bits;  conditional E-value: 2.4e-06
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF + ss+++ +l +++++ VT M+
  MMETSP1061-20121228|8673_1 432 MFEYTSSFNQ-PLNGWNVRRVTAMT 455
                 9*********.*************6 PP

  == domain 10    score: 9.6 bits;  conditional E-value: 7.9e-05
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnM 24 
                 MFs+  ++++ +l  ++T  V  M
  MMETSP1061-20121228|8673_1 457 MFSNANQFNQ-PLNHWNTTRVRKM 479
                 **********.*********9877 PP

  == domain 11    score: 26.2 bits;  conditional E-value: 5e-10
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMss 26 
                 MF + s++++ +l+n+d+s+VT M+s
  MMETSP1061-20121228|8673_1 482 MFEYASAFNQ-PLENWDVSKVTYMTS 506
                 **********.*************86 PP

  == domain 12    score: 9.4 bits;  conditional E-value: 9.2e-05
   TIGR02167   2 FsgCssLtsLDlSnfdTsnVTnMs 25 
                 F g ss+ + +l  +d+snVT ++
  MMETSP1061-20121228|8673_1 533 FHGASSFDQ-PLNDWDVSNVTILT 555
                 677777777.999********765 PP

  == domain 13    score: 5.5 bits;  conditional E-value: 0.0015
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnV 21 
                 MF+g +++++ +l+ ++++ V
  MMETSP1061-20121228|8673_1 557 MFAGAKAFNQ-PLDRWNVARV 576
                 **********.******9987 PP

  == domain 14    score: 13.1 bits;  conditional E-value: 6.5e-06
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnM 24 
                 MF + ss+++ +l ++++++VT+ 
  MMETSP1061-20121228|8673_1 582 MFKSASSFNQ-PLQSWNVASVTDT 604
                 9*********.***********96 PP

  == domain 15    score: 5.6 bits;  conditional E-value: 0.0014
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVT 22 
                 MF+  +s+++ +l+ +++++V 
  MMETSP1061-20121228|8673_1 607 MFAAATSFNQ-PLDEWNVAKVR 627
                 9*********.*********96 PP

  == domain 16    score: -1.0 bits;  conditional E-value: 0.17
   TIGR02167  20 nVTnMs 25 
                 +VTnM 
  MMETSP1061-20121228|8673_1 655 EVTNMF 660
                 6****6 PP

>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   3.8e-05     0.078     214     269 ..     181     236 ..     172     250 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 3.8e-05
   TIGR01804 214 akvsltGgvetGkkimaaaaeelkkvtlelGGksPlivfddadlelavdqallanf 269
                 + +s  G+v++ ++ ++   ++ ++ +   GGk Pli +  adl+ a+ + l ++ 
  MMETSP1061-20121228|8673_1 181 SSISTGGAVRSLRRGLQPELQKYEHCSQTCGGKRPLIRLSGADLQNAISNCLYGEV 236
                 56888999999999999999999**************************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 3412.16
//
Query:       MMETSP1061-20121228|8671_1  [L=990]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-25   86.6   0.1    1.1e-19   67.6   0.0    3.7  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
      2e-22   77.7   9.9    1.6e-11   42.0   0.8    5.4  6  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      5e-20   69.5  14.0    5.2e-10   37.0   0.3    7.0  7  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
      6e-11   39.5   0.2      2e-07   27.8   0.1    2.2  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
      3e-10   38.6   0.4    5.1e-05   21.7   0.3    5.2  5  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    3.6e-09   33.2   2.1    1.5e-06   24.5   0.2    3.4  4  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
  ------ inclusion threshold ------
      0.038   10.3   0.0      0.065    9.6   0.0    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.1   0.00068       0.4     547     734 ..      85     282 ..      81     283 .. 0.61
   2 !    4.3   0.0    0.0026       1.5     581     633 ..     749     801 ..     710     811 .. 0.74
   3 !   67.6   0.0   1.9e-22   1.1e-19     274     430 ..     816     972 ..     802     980 .. 0.94

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00068
   TIGR02917 547 gneeeavallekaaekdpkel.epalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpd........salalllladvyavaknkakAltslkkaLelk.pdnteaqlllaqLlleekrleeAlk..llkelekqkpkaalgfeleGdlalrqkdykaAiqaykkalkrap 734
                 +n+  + + l++  e+d++ l + + +L+q yl+   l+ a  ++e +++  + + +++ llg      +  + a++++ + +++ +         + +   l+a+     +++ +A+++l +    + ++  +  + + ++++++ +    +   l+++     p+ a+g  l+G++  r+++  +A+++y+  l++ p
  MMETSP1061-20121228|8671_1  85 NNHTRKNNALTQR-EQDQQSLeATYTSLIQEYLQVMCLENATFLAERMVASCKTTNAYY-LLGVCHYRSGAPQRALSVLSNNIQQSSRgagctkyhHSATAHLIAKCCFDLQQYSRAEEALLETARVDyKEYKNVSRNQGNIYNKDTNAMMTMDewLIETSPCPIPNGAAGLYLLGNICRRSNRRRRAMEYYRMSLQLDP 282
                 5666666667777.455555415688999999999999999999999998887776655.78888889999999999999888887641111111112222334444455566666666654433333144455566666666554433332222244444445577888888888888888888888888887777765 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0026
   TIGR02917 581 gelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpd 633
                 ++      ++++a+d  + spe++ ++g+ +  +k+++ a+  f   l+l+p 
  MMETSP1061-20121228|8671_1 749 KKEVELAHLAQQAVDFDRLSPEAWCVVGNCFSLQKEHETALVFFGRSLQLDPS 801
                 33333346899999999999999999999999999999999999988888886 PP

  == domain 3    score: 67.6 bits;  conditional E-value: 1.9e-22
   TIGR02917 274 kkkfedAretlqaalksapeylpalllaGaseyqlgeleqAeqylnqilkaaPnshqArrllAaiqLkegkvdeaiatlspalekdsddsallsllGeayLekgdfekAaeylakaseldPenaaaktklgiskLaqGdkseaiadLetAvkldpel 430
                 +++fe+A+  + + ++ +  +++a +  Ga++ +++++  Ae ++++++++ P+s   r  l ++q  +gk+dea+ tl +a ++d+++++++     +y+++   e+A ++l+k+   +P +a ++ + g      G++++a+  + tA++ldp+ 
  MMETSP1061-20121228|8671_1 816 NEDFEKAMACFRNGIRLDERHYNAWYGMGAIYHRQEKYDLAEYHFQRAVQINPQSSVLRCNLGMSQYSNGKPDEALDTLAEAFRLDPHNPQARFQRATIYVAQNRPEEALKELEKVRDAAPREATVHFAMGKVLKRLGRPEQAMRCFLTALDLDPKD 972
                 567*****************************************************************************************************************************999999999*****************975 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.3      0.19   1.1e+02      20      84 ..      94     157 ..      84     175 .. 0.64
   2 ?   -0.2   0.0      0.22   1.3e+02     142     175 ..     258     291 ..     249     297 .. 0.77
   3 ?   -3.2   0.0       1.9   1.1e+03      90     123 ..     685     718 ..     682     736 .. 0.64
   4 ?    3.5   0.0     0.016       9.6      55      97 ..     759     801 ..     749     807 .. 0.79
   5 !   42.0   0.8   2.8e-14   1.6e-11      37     127 ..     809     899 ..     803     906 .. 0.95
   6 !   31.8   0.0   3.8e-11   2.2e-08      32     100 ..     906     974 ..     899     976 .. 0.96

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.19
   TIGR02521  20 esskkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekA 84 
                  +++++d+++  ++++ L  eYl+   le+A+   e  ++   k  +a+  l++   + g  ++A
  MMETSP1061-20121228|8671_1  94 LTQREQDQQSLEATYTSLIQEYLQVMCLENATFLAERMVA-SCKTTNAYYLLGVCHYRSGAPQRA 157
                 4677778888888888888888887777777655554443.344555566666555555555555 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.22
   TIGR02521 142 glcalkagdtekaekyltralkidpkrpesllel 175
                 g + ++ +++ +a +y +++l++dp   +s  +l
  MMETSP1061-20121228|8671_1 258 GNICRRSNRRRRAMEYYRMSLQLDPLMWVSYEAL 291
                 6677888899999999999999998776666655 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 1.9
   TIGR02521  90 kAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfe 123
                 +Al+l    ++v+ N G+ L q++++   ++ ++
  MMETSP1061-20121228|8671_1 685 EALQLFGVLPHVHHNTGWVLHQEGRAFFEMAEYQ 718
                 5666666667777888888888774333333333 PP

  == domain 4    score: 3.5 bits;  conditional E-value: 0.016
   TIGR02521  55 ekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpn 97 
                 ++A+  d  + +a+ + +  +  ++e+e A   f ++l+l+p 
  MMETSP1061-20121228|8671_1 759 QQAVDFDRLSPEAWCVVGNCFSLQKEHETALVFFGRSLQLDPS 801
                 6788888888888888888888888888888888888888774 PP

  == domain 5    score: 42.0 bits;  conditional E-value: 2.8e-14
   TIGR02521  37 LaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAie 127
                  + eY++++d+ekA +   + + ld   ++a+  ++ +y ++ + + Ae +f++A++++p++  ++ N G+  ++++k +eA   + +A +
  MMETSP1061-20121228|8671_1 809 SGYEYMANEDFEKAMACFRNGIRLDERHYNAWYGMGAIYHRQEKYDLAEYHFQRAVQINPQSSVLRCNLGMSQYSNGKPDEALDTLAEAFR 899
                 589**********************************************************************************999976 PP

  == domain 6    score: 31.8 bits;  conditional E-value: 3.8e-11
   TIGR02521  32 kirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                 ++r q a+ Y +q+  e+A ++lek   ++p +a ++ a++ ++++lg+ e+A + f +Al l+p++ +
  MMETSP1061-20121228|8671_1 906 QARFQRATIYVAQNRPEEALKELEKVRDAAPREATVHFAMGKVLKRLGRPEQAMRCFLTALDLDPKDNQ 974
                 799**************************************************************9987 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   1.4    0.0035       2.1      46     118 ..     134     212 ..      97     225 .. 0.58
   2 ?   -2.6   0.0       1.5     9e+02      58      83 ..     257     282 ..     254     291 .. 0.88
   3 ?    3.0   0.0     0.029        17      68     112 ..     683     727 ..     670     736 .. 0.78
   4 !   13.4   0.0   1.7e-05    0.0099      50     115 ..     767     832 ..     759     834 .. 0.91
   5 !   29.2   1.2   2.3e-10   1.3e-07      24     112 ..     809     897 ..     803     898 .. 0.97
   6 !   37.0   0.3   8.9e-13   5.2e-10      15     117 ..     834     936 ..     832     942 .. 0.92
   7 !    9.2   0.0   0.00036      0.21      51      86 ..     938     973 ..     934     981 .. 0.57

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0035
   TIGR02552  46 aldpteakywlgLaaclqalkeyeeA.......iaaYalaaaldlddprpvyh.aaecllalgekeeAlkaLklaieiaee 118
                  +  t+a+y+  L++c+ + +  ++A       i++ ++ a +++ ++++  h +a+c + l+++ +A++aL  +++++++
  MMETSP1061-20121228|8671_1 134 SCKTTNAYYL--LGVCHYRSGAPQRAlsvlsnnIQQSSRGAGCTKYHHSATAHlIAKCCFDLQQYSRAEEALLETARVDYK 212
                 3444444444..556666666666662222222455567777776666666553689999999999999999888877664 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.5
   TIGR02552  58 LaaclqalkeyeeAiaaYalaaaldl 83 
                 L+  + + ++  +A++ Y + ++ld+
  MMETSP1061-20121228|8671_1 257 LGNICRRSNRRRRAMEYYRMSLQLDP 282
                 788899999999********999987 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.029
   TIGR02552  68 yeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLkla 112
                   eA++ +++   +  ++  ++ + +  ++++ e+++A+++L++ 
  MMETSP1061-20121228|8671_1 683 CREALQLFGVLPHVHHNTGWVLHQEGRAFFEMAEYQNAQRCLEMM 727
                 567888888888888888888888888888888888888888875 PP

  == domain 4    score: 13.4 bits;  conditional E-value: 1.7e-05
   TIGR02552  50 teakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaiei 115
                  + + w   + c+  +ke+e+A+ ++++ ++ld++  + +  ++  ++a ++ e+A+++++  i++
  MMETSP1061-20121228|8671_1 767 LSPEAWCVVGNCFSLQKEHETALVFFGRSLQLDPSFTYTHTLSGYEYMANEDFEKAMACFRNGIRL 832
                 566789999***************************************************987776 PP

  == domain 5    score: 29.2 bits;  conditional E-value: 2.3e-10
   TIGR02552  24 lAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLkla 112
                 ++Y+ +++ ++e+A   F+  + ld   ++ w+g++a ++++++y+ A + +++a+++++++ +    ++ + +  g++ eAl++L+ a
  MMETSP1061-20121228|8671_1 809 SGYEYMANEDFEKAMACFRNGIRLDERHYNAWYGMGAIYHRQEKYDLAEYHFQRAVQINPQSSVLRCNLGMSQYSNGKPDEALDTLAEA 897
                 5899*********************************************************************************9876 PP

  == domain 6    score: 37.0 bits;  conditional E-value: 8.9e-13
   TIGR02552  15 eeqleaiYalAYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae 117
                 e + +a Y ++     q ky+ Ae  Fq  ++++p+++     L+++    ++ +eA+++ a a+ ld+++p++ +++a  ++a +++eeAlk L+ + + a 
  MMETSP1061-20121228|8671_1 834 ERHYNAWYGMGAIYHRQEKYDLAEYHFQRAVQINPQSSVLRCNLGMSQYSNGKPDEALDTLAEAFRLDPHNPQARFQRATIYVAQNRPEEALKELEKVRDAAP 936
                 56667888888888899******************************************************************************99987765 PP

  == domain 7    score: 9.2 bits;  conditional E-value: 0.00036
   TIGR02552  51 eakywlgLaaclqalkeyeeAiaaYalaaaldlddp 86 
                 ea  +++++ +l++l++ e+A+ ++  a+ ld++d 
  MMETSP1061-20121228|8671_1 938 EATVHFAMGKVLKRLGRPEQAMRCFLTALDLDPKDN 973
                 344455556666666666666666666666665554 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.1   3.5e-10     2e-07     338     488 ..     776     926 ..     752     927 .. 0.92
   2 !   18.7   0.0     2e-07   0.00012     338     431 ..     878     971 ..     875     978 .. 0.95

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 3.5e-10
   TIGR00990 338 GifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfdeale 488
                 G    l+ +he al  + +s++ldP++t ++       +  +d +ka   f + +++d    + +y  + +   +++++ a+  ++++++++p+       l++ qy  g+ +++  ++ +a +  p+ P+     a + + +n  +eal+
  MMETSP1061-20121228|8671_1 776 GNCFSLQKEHETALVFFGRSLQLDPSFTYTHTLSGYEYMANEDFEKAMACFRNGIRLDERHYNAWYGMGAIYHRQEKYDLAEYHFQRAVQINPQSSVLRCNLGMSQYSNGKPDEALDTLAEAFRLDPHNPQARFQRATIYVAQNRPEEALK 926
                 55556899********************77777777788889999***************************************************************************************9999*********999998 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 2e-07
   TIGR00990 338 GifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpd 431
                 G+ ++  gk++eal+ l  +  ldP   q+  +ra+i + ++ +++a ++++k  +  + ++ +++  +++   +g  ++a + +  + dldp+
  MMETSP1061-20121228|8671_1 878 GMSQYSNGKPDEALDTLAEAFRLDPHNPQARFQRATIYVAQNRPEEALKELEKVRDAAPREATVHFAMGKVLKRLGRPEQAMRCFLTALDLDPK 971
                 6678889*************************************************************************************95 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.022        13      35      69 ..     134     168 ..     127     176 .. 0.87
   2 ?   -0.6   0.0      0.71   4.2e+02      42      82 ..     254     294 ..     249     298 .. 0.78
   3 ?   -3.4   0.0       5.3   3.1e+03      75      97 ..     768     790 ..     765     797 .. 0.74
   4 !   21.7   0.3   8.6e-08   5.1e-05      10     114 ..     811     909 ..     803     913 .. 0.87
   5 !    7.7   0.0    0.0019       1.1      34      99 ..     900     962 ..     889     978 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.022
   TIGR02795  35 stlapnAqYwlGealyakkkykdAakaflevvkky 69 
                 s ++ nA+Y+lG   y+ +  ++A    ++ +++ 
  MMETSP1061-20121228|8671_1 134 SCKTTNAYYLLGVCHYRSGAPQRALSVLSNNIQQS 168
                 66899*******************99999888875 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.71
   TIGR02795  42 qYwlGealyakkkykdAakaflevvkkypksekapdallkl 82 
                  Y+lG+   + +  ++A ++++  ++ +p    + +al ++
  MMETSP1061-20121228|8671_1 254 LYLLGNICRRSNRRRRAMEYYRMSLQLDPLMWVSYEALCEM 294
                 59999999999999999999999988777666666666555 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 5.3
   TIGR02795  75 apdallklgeslqelgqkekAkk 97 
                 +p+a+  +g++++ ++++e+A  
  MMETSP1061-20121228|8671_1 768 SPEAWCVVGNCFSLQKEHETALV 790
                 57888888888888888888755 PP

  == domain 4    score: 21.7 bits;  conditional E-value: 8.6e-08
   TIGR02795  10 llvlkegdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaakl 114
                 ++++ + d++kA + F++ ++    ++   nA Y +G  + +++ky+ A+++f+ +v+ +p+s+       +lg+s++ +g+ ++A  tl e  +  P++++a+ 
  MMETSP1061-20121228|8671_1 811 YEYMANEDFEKAMACFRNGIRL---DERHYNAWYGMGAIYHRQEKYDLAEYHFQRAVQINPQSSVL---RCNLGMSQYSNGKPDEALDTLAEAFRLDPHNPQARF 909
                 6788899999999998888775...88999****************************99998764...5789*****************999888888888765 PP

  == domain 5    score: 7.7 bits;  conditional E-value: 0.0019
   TIGR02795  34 kstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktl 99 
                  ++  p+A++ ++  ++a++  ++A k+ ++v  + p +   +   + +g++l++lg+ e+A + +
  MMETSP1061-20121228|8671_1 900 LDPHNPQARFQRATIYVAQNRPEEALKELEKVRDAAPRE---ATVHFAMGKVLKRLGRPEQAMRCF 962
                 567789999999999999999999999999999866655...556677899999999999997765 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.44   2.6e+02      89     117 ..     254     282 ..     247     283 .. 0.86
   2 ?   -0.5   0.0     0.094        55      57     117 ..     738     800 ..     683     809 .. 0.75
   3 !   24.5   0.2   2.6e-09   1.5e-06      96     205 ..     847     956 ..     813     962 .. 0.88
   4 !   17.5   0.1   3.4e-07    0.0002     396     465 ..     906     975 ..     902     987 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.44
   TIGR03939  89 lealAkAaRnekqwdkAlelyrkllqrdP 117
                 l  l++ +R++ +   A+e+yr +lq dP
  MMETSP1061-20121228|8671_1 254 LYLLGNICRRSNRRRRAMEYYRMSLQLDP 282
                 66677789999999************998 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.094
   TIGR03939  57 dDllavlsWagedk.evidvyery.slvglparelealAkAaRnekqwdkAlelyrkllqrdP 117
                  Dll   +W+ +++ e   +++++ ++ +l+ +++  +++ +  +k+ ++Al ++ ++lq dP
  MMETSP1061-20121228|8671_1 738 LDLLSTVLWQLKKEvELAHLAQQAvDFDRLSPEAWCVVGNCFSLQKEHETALVFFGRSLQLDP 800
                 477777788754432666777777788888888888888888888888888888888888887 PP

  == domain 3    score: 24.5 bits;  conditional E-value: 2.6e-09
   TIGR03939  96 aRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltrlgapa 205
                 + +++++d A+  ++++ q +P++  l+  l +++  +gk++eAl++l+e+   +p++ + +  +a ++ a++++ +al+ ++++ +++P + ++  +  ++l+rlg p 
  MMETSP1061-20121228|8671_1 847 YHRQEKYDLAEYHFQRAVQINPQSSVLRCNLGMSQYSNGKPDEALDTLAEAFRLDPHNPQARFQRATIYVAQNRPEEALKELEKVRDAAPREATVHFAMGKVLKRLGRPE 956
                 678999*********************************************99**9888888888888888888889999999999999999999999999999999986 PP

  == domain 4    score: 17.5 bits;  conditional E-value: 3.4e-07
   TIGR03939 396 eaqslkvlllaysgdlseAekkleellatAPgNqslrlalaeveraRgwprrAeqllkkaeslepdslsa 465
                 +a+ +++++++++++ +eA k+le+++  AP ++ +  a+++v +  g+p++A + +  a  l+p++ ++
  MMETSP1061-20121228|8671_1 906 QARFQRATIYVAQNRPEEALKELEKVRDAAPREATVHFAMGKVLKRLGRPEQAMRCFLTALDLDPKDNQL 975
                 6677778888888888888888888888888888888888888888888888888888888887766554 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00011     0.065      71     170 ..     871     966 ..     850     981 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00011
   TIGR03922  71 edlalayavalaeageyaeAdkllaeveaarsewldarwvrvvlyyrtqRWsdvleqltpavrlsdldkaaaaaakaalgvalArLGlfeealryleeal 170
                 + l + +    +++g+  eA   lae+  +++   +ar+ r+ +y + +R  + l++l+++     + +   a+++ a+g  l rLG  e+a+r    al
  MMETSP1061-20121228|8671_1 871 SVLRCNLGMSQYSNGKPDEALDTLAEAFRLDPHNPQARFQRATIYVAQNRPEEALKELEKVRDAA-PRE---ATVHFAMGKVLKRLGRPEQAMRCFLTAL 966
                 457888999999********************999***********************9886665.333...45667778889******99999765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (990 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.61u 0.16s 00:00:00.77 Elapsed: 00:00:00.45
# Mc/sec: 2903.76
//
Query:       MMETSP1061-20121228|8669_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-25   85.5   0.0    9.3e-25   85.2   0.0    1.1  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    2.3e-24   83.9   0.0    2.9e-24   83.6   0.0    1.1  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    1.7e-22   77.6   0.0    2.4e-22   77.2   0.0    1.2  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    8.8e-19   65.3   0.0    1.7e-18   64.4   0.0    1.5  1  TIGR01179 galE: UDP-glucose 4-epimerase
    1.6e-16   57.9   0.0    2.2e-16   57.5   0.0    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    4.8e-07   27.5   0.0    1.2e-05   22.9   0.0    2.4  1  TIGR01777 yfcH: TIGR01777 family protein
    0.00028   17.2   0.0    0.00037   16.8   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      0.003   14.5   0.0     0.0072   13.3   0.0    1.6  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
     0.0051   13.8   0.1       0.49    7.3   0.0    2.2  2  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
  ------ inclusion threshold ------
      0.014   12.7   0.0      0.021   12.1   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases


Domain annotation for each model (and alignments):
>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.2   0.0   2.3e-27   9.3e-25       2     313 ..      19     327 ..      18     332 .. 0.83

  Alignments for each domain:
  == domain 1    score: 85.2 bits;  conditional E-value: 2.3e-27
   TIGR01181   2 lLvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietn.vvGtytlleavrkelkevr.llhistDevyGdlekdd.ae..ftett..plaPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqf....pekliPllitnala.gkklpvyGdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWyle 313
                 + v GGaGfiGs + + + e  + + v+ +D  t a  k+   +  d    +f+kgd+   e+  + +k  +   v n+aa+      i + e  ++ n     + +lea+r+  ++v+ +   s    y + +++d a+   +e++  p  P+  y   k  s+ +  ay r ++++++++r  n yGpy       ek    ++++a++  ++  ++GdG+q r + y++D ++++  ++  +  + v nig+ e  + +e  ++ l+  ++++  i++++  +G   r + + + i+++Lgw+p++++ egl+kt  W +e
  MMETSP1061-20121228|8669_1  19 VCVGGGAGFIGSHLAKRMKE--SGWYVICVDWKTNAFMKN--DEFCD----EFIKGDLRKLEVACKACKGCT--QVYNLAADMGGMGFICSNESVLSFNnTAISMNMLEAARR--NKVKnFFYSSSACAYNESKQEDpANpgLAESDawPARPQDMYGLEKLYSEEMALAYGRDFDINIRLARFHNIYGPYGTweggREKAPAAFCRKAITsTEHFEMWGDGKQTRSFTYIDDCVEGVLRLMF-SDCKLVVNIGSTEMVDMIEFANVALSF-EDKKLPIKHIDGPTGVRGRNS-NNKLIREQLGWEPTTKISEGLKKTYFWIKE 327
                 6799**********999866..3599*****999876554..34444....8************9*999877..9*******998888888777776541555789******9..455559999999******99997533356776225689999***********************************8623335788888999887625789*********************988776.5677899************99988875.557889******99*999988.6678999******************99765 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   7.2e-27   2.9e-24       2     313 ..      20     325 ..      19     328 .. 0.84

  Alignments for each domain:
  == domain 1    score: 83.6 bits;  conditional E-value: 7.2e-27
   TIGR02197   2 ivTGgaGfiGsnlvaalnekgetdilvvDklrkge.kllnlkdeeiadyidkeellerlekeelkkveavfHegAisdTteldgellmenNyeyskellelcaekevk.liYASSAavYGdseeefreekele.......rPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnq.ikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsfndlaaavvkalgkdekieyidmPealrgkyqkfTqadleklreagykkeflsleegvkdYvkel 313
                  v GgaGfiGs l+++++e+g   ++ vD  +++  k  ++ de i +++ k e+  +  k+ ++  ++   +g +   +  ++++l  nN+++s+++le++  ++vk ++Y SSA  Y +s++e   +  l+       rP+ +Yg  Kl  +e++      ++ + ++   r+ N+yGp  ++ g      + + ++ i+++++       e   dG+q+R F+y++D+v+ +l l+ ++    + n+G+ +     + a++ ++  +k+  i++id P  +rg+     +++ + +re++  +++++++eg+k+   ++
  MMETSP1061-20121228|8669_1  20 CVGGGAGFIGSHLAKRMKESG-WYVICVDWKTNAFmKNDEFCDEFIKGDLRKLEVACKACKGCTQVYNLAADMGGMGF-ICSNESVLSFNNTAISMNMLEAARRNKVKnFFYSSSACAYNESKQEDPANPGLAesdawpaRPQDMYGLEKLYSEEMALA--YGRDFDINIRLARFHNIYGPYGTWEGGREKAPAAFCRKaITSTEHF------EMWGDGKQTRSFTYIDDCVEGVLRLMFSD-CKLVVNIGSTEMVDMIEFANVALSFEDKKLPIKHIDGPTGVRGR-----NSNNKLIREQLGWEPTTKISEGLKKTYFWI 325
                 699*****************9.67888898887767*******************99999987777788888888765.6678999999*************999875499*********88877766666556788899*****************94..457777789999************9877665555554404444444......445678899***************99995.8899*******************9999999***********998.....677888888999999999999988766665 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   5.9e-25   2.4e-22       1     264 [.      19     285 ..      19     313 .. 0.77

  Alignments for each domain:
  == domain 1    score: 77.2 bits;  conditional E-value: 5.9e-25
   TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfhlaalia.iPy..syvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGtaqy.vPid......ekhplqaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPr...qsaraviPtiitq..ilsgkkkiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkliaeilgkeveivt 264
                 v v G  GfiGshl+ ++ e+G  v        +n +   de+++      e ++Gd+r+ e+  ka kg+++v+ laa ++ + +  s ++  s+ +t +  ++n+l+aar ++v+ +  +s++  y  ++   P +      ++ p ++q  y   k+ ++++al++ r f++ + ++r  n yGP       r   P+   +  i s+++    G+ + tr f+y+ d veg+++++ sd  +  v+nigs   + + + +++  +  +k++ i++
  MMETSP1061-20121228|8669_1  19 VCVGGGAGFIGSHLAKRMKESGWYVIC--VDWKTNAFMKNDEFCD------EFIKGDLRKLEVACKACKGCTQVYNLAADMGgMGFicSNESVLSFNNTAI--SMNMLEAARRNKVKNFFYSSSACAYNESKQeDPANpglaesDAWPARPQDMYGLEKLYSEEMALAYGRDFDINIRLARFHNIYGPYgtwEGGREKAPAAFCRkaITSTEHFEMWGDGKQTRSFTYIDDCVEGVLRLMFSDCKL--VVNIGSTEMVDMIEFANVALSFEDKKLPIKH 285
                 56899******************9954..3344555555555552......6799************************8752343114555555555554..79***********************9776424542222222678*****************************************72224579999987654215555555567************************99876..9*****9999999998888888887777754 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.0   4.1e-21   1.7e-18       1     328 [.      18     328 ..      18     332 .. 0.82

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 4.1e-21
   TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavle....eekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYgesek.....vpisE..esplnpinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddLeeiiksawdWekkl 328
                 k+ v GgaG+iGsh ++ ++e+g  v+ +D  ++++ +  +  +     ++++gdl+  e   ++ +      ++ a +   ++i  +Esv +      nn+  ++++lea ++ +vk++ +sssa  Y es++       + E  + p  p++ YG  kl +E++  ++ +   ++++ + R+ n+ G     e G+++ +a       ++ a+  +e++e++G      DG   R + +++D  e+ l+ +     ++ + v n+G+ +   + e  + + +  +k+++++  d  +G      ++++ i+++lgw+p+ + + e +k+++ W k+ 
  MMETSP1061-20121228|8669_1  18 KVCVGGGAGFIGSHLAKRMKESGWYVICVDWKTNAFMKNDEFCD-----EFIKGDLRKLEVACKACKgctqVYNLAADMGGMGFICSNESVLS-----FNNTAISMNMLEAARRNKVKNFFYSSSACAYNESKQedpanPGLAEsdAWPARPQDMYGLEKLYSEEMALAYGRD-FDINIRLARFHNIYGPYGTWEGGREKAPA-----AFCRKAITSTEHFEMWG------DGKQTRSFTYIDDCVEGVLRLMF----SDCKLVVNIGSTEMVDMIEFANVALSFEDKKLPIKHIDGPTGVRG-RNSNNKLIREQLGWEPTTK-ISEGLKKTYFWIKEE 328
                 57899***************************999999888888.....6******9987665554432224555566666666667777754.....59*****************************9987622221234441156788******************9765.9**************99888888877765.....46888999999******......67888999999999998766443....3456899****************************9999888655.5789999*********998.999999999998765 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   5.5e-19   2.2e-16       2     128 ..      18     147 ..      17     186 .. 0.83

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 5.5e-19
   TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeaslkkalkGcealfHvAAdy...rlwakdpeelykanvegtravleaAleagvervvytssvatlgvkedgkeade 128
                 kv v G++GF+Gs++++ ++e+G  v ++  kt      +e+  E ++Gdl+  ++  ka kGc++++ +AAd     +   +++ l  +n   + ++leaA++++v+   y+ss  + + +++ ++a+ 
  MMETSP1061-20121228|8669_1  18 KVCVGGGAGFIGSHLAKRMKESGWYVICVDWKTNAFMKNDEFCDEFIKGDLRKLEVACKACKGCTQVYNLAADMggmGFICSNESVLSFNNTAISMNMLEAARRNKVKNFFYSSSACAYNESKQEDPANP 147
                 7899*************************9999988888**********************************7332578899999999**************************999988877777653 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0     3e-08   1.2e-05       1     235 [.      19     271 ..      19     283 .. 0.70

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 3e-08
   TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee......aeeealegvdavinLaGepiadkrwteerkkeileSRikttealvelikkakqkpkvlisasavgyYg.eseeke....lteee...eeagddFlaklceeWEeaaqaaeklgvrvvllRtgivLge....kGGalakllllf.....klglggklGsGrqwlsWihleDlvklilfaleneevsGvvNataPepvrnkefak 235
                 v + Gg G+iG++l+++++++g  v+ +  ++++  ++ ++   e+++        + +a +g++ v nLa        +  ++ + +      ++  ++e+ +++k  +k ++ +s+   Y+ +++e++    l+e++   + ++d +  +  ++ E a +   + ++ + l+R+  + g+    +GG  ++   +      ++      G+G+q  s+  ++D v+ +l ++ + +++ vvN+ + e v++ efa+
  MMETSP1061-20121228|8669_1  19 VCVGGGAGFIGSHLAKRMKESGWYVICVDWKTNAFMKNDEFCD-EFIKGdlrkleVACKACKGCTQVYNLAADMGG-MGFICSNESVLSFNNTAISMNMLEAARRNK--VKNFFYSSSACAYNeSKQEDPanpgLAESDawpARPQDMYGLEKLYSEEMALAYGRDFDINIRLARFHNIYGPygtwEGGREKAPAAFCrkaitSTEHFEMWGDGKQTRSFTYIDDCVEGVLRLMFS-DCKLVVNIGSTEMVDMIEFAN 271
                 6799*********************999888876555554444.33333355555566699**********76554.668777777776555555555555555554..5555555555555514444432333567665545667778777777778888899999*************9833334565544444440000044445568*********************9988.9***************99986 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     9e-07   0.00037     416     505 ..      18     105 ..       9     150 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 9e-07
   TIGR02632 416 valvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiav 505
                  + v Gga+ iG+ +a+r+ + G +v+++d +++a    ++e+ d+f ++  + l++     +  +++++  a + GG+  + +n  + +
  MMETSP1061-20121228|8669_1  18 KVCVGGGAGFIGSHLAKRMKESGWYVICVDWKTNAF-MKNDEFCDEFIKGDLRKLEVACKACKGCTQVYN-LAADMGGMGFICSNESVLS 105
                 5679999999********************987665.567899*******99999999888888877765.5668999999998877654 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.8e-05    0.0072       1     219 [.      18     270 ..      18     287 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.8e-05
   TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs...............qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNala.tenlAraaarvgallvhiSTD.YvFDG.ekkrp....Yreede..tnPlnvYgqsKlaGEvavraasekali....vRtswlygasgg.....rnFvktmlrla.kereelkvvad..QigsPTyakdlaevlaallereargvyHlanegqvSwyefa 219
                 ++ + G++g +g++L+++++++g+ v++++ +               + dl++ e +++  +     +v n aA     +    +e +   N +a ++n+ +aa r ++ + ++S     +   ++++p     +e+d+    P+++Yg  Kl  E +++a++ ++ i     R   +yg +g+     +   +   r+a +++e+ ++  d  Q+ s Ty +d  e +++l+ +  + v  + ++ +v   efa
  MMETSP1061-20121228|8669_1  18 KVCVGGGAGFIGSHLAKRMKESGWYVICVDWKtnafmkndefcdefiKGDLRKLEVACKACKGC--TQVYNLAADMGGMGFICSNESVLSFNNTAiSMNMLEAARRNKVKNFFYSSSaCAYNEsKQEDPanpgLAESDAwpARPQDMYGLEKLYSEEMALAYGRDFDInirlARFHNIYGPYGTweggrEKAPAAFCRKAiTSTEHFEMWGDgkQTRSFTYIDDCVEGVLRLMFSDCKLVVNIGSTEMVDMIEFA 270
                 68899************************99999***************************995..58999999777777777777777777777468999999999998887776514555423333322225677753367****************999996655411145556777776666555333344444443555556666554466667777776666666666655555555555555555555 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.5   0.0    0.0081       3.3       4      35 ..      16      47 ..      15     128 .. 0.86
   2 !    7.3   0.0    0.0012      0.49     305     348 ..     300     344 ..     260     347 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0081
   TIGR02622  4 gkkvlvtGhtGfkGsWlslwLkelGaevaGys 35
                gkkv v G  Gf Gs l+  +ke G  v+   
  MMETSP1061-20121228|8669_1 16 GKKVCVGGGAGFIGSHLAKRMKESGWYVICVD 47
                79*****************9999998887554 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0012
   TIGR02622 305 dkakkklgwkprlsleeaveatveWykeaylkge.eveeltleqi 348
                 +  +++lgw+p+ +++e +++t  W ke ++k+  +  ++++++i
  MMETSP1061-20121228|8669_1 300 KLIREQLGWEPTTKISEGLKKTYFWIKEEIEKKGgDSSAYSKSEI 344
                 556899*********************988776657777777766 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     5e-05     0.021       4      92 ..      20     108 ..      17     143 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5e-05
   TIGR02415   4 lvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdks.eveeaveqaveklGeldvlvnnaGvalvtp 92 
                  v G+a  iG+ +a+r+ + G+ v+ +d + ++ ++   e+ ++  k    kl+v+ k+ +  + v + ++++G++  +  n  v   + 
  MMETSP1061-20121228|8669_1  20 CVGGGAGFIGSHLAKRMKESGWYVICVDWKTNAFMKN-DEFCDEFIKGDLRKLEVACKAcKGCTQVYNLAADMGGMGFICSNESVLSFNN 108
                 68899999*********************98877764.6778888888999999998872445678888889999988888877766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 1513.75
//
Query:       MMETSP1061-20121228|8672_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 2614.40
//
Query:       MMETSP1061-20121228|8676_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1281.39
//
Query:       MMETSP1061-20121228|8674_1  [L=1210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.8    2.5   7.6        8.9    1.6   5.3    1.4  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   5.3    0.0022       8.9     966    1001 ..       5      39 ..       1      58 [. 0.73

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0022
   TIGR00927  966 dgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeee 1001
                  d +   d G+s++e++ ++e+ +e++e+e ++ee  
  MMETSP1061-20121228|8674_1    5 DSDHHHDRGNSDDENDTDDEDYDEDDENEFNDEE-T 39  
                  6778899*********999966655554444333.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.54u 0.12s 00:00:00.66 Elapsed: 00:00:00.35
# Mc/sec: 4563.05
//
Query:       MMETSP1061-20121228|8675_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-44  150.4   0.0    1.3e-44  150.1   0.0    1.1  1  TIGR01090 apt: adenine phosphoribosyltransferase
    2.1e-13   47.7   0.1    2.9e-13   47.2   0.0    1.1  1  TIGR01743 purR_Bsub: pur operon repressor PurR
    1.5e-12   45.4   0.0    2.2e-12   44.8   0.0    1.2  1  TIGR01744 XPRTase: xanthine phosphoribosyltransferase
    8.5e-12   43.0   0.0    2.7e-11   41.4   0.0    1.6  1  TIGR00336 pyrE: orotate phosphoribosyltransferase
    1.2e-09   35.9   0.4    1.6e-08   32.3   0.3    2.0  1  TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase
    1.3e-06   25.3   0.4    3.1e-06   24.2   0.2    1.6  1  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
    0.00033   18.3   0.0    0.00047   17.8   0.0    1.2  1  TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
    0.00056   17.5   0.1    0.00082   16.9   0.0    1.2  1  TIGR01091 upp: uracil phosphoribosyltransferase
    0.00066   17.5   0.0      0.001   16.9   0.0    1.3  1  TIGR00201 comF: comF family protein


Domain annotation for each model (and alignments):
>> TIGR01090  apt: adenine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.0   2.9e-47   1.3e-44       5     150 ..      19     166 ..      15     175 .. 0.96

  Alignments for each domain:
  == domain 1    score: 150.1 bits;  conditional E-value: 2.9e-47
   TIGR01090   5 irkipdfPkkGi.lFrDitpllenaelfrllidqlverlkeakidlvvgleaRGFifgaalalklgvgfvpvRkkgkLpaetvsasYdlEYgkd.kleihkdalkkgkrvlivDDllAtgGtveAaleLikklgaevveaaflielkk 150
                  + +p fP kGi  F+Di   l ++e+f++++d +ver+ ++ id v+gl+aRGFi+g+++al+l+ +f+++Rkkgk+p+ + s++Y+ EYg+   l+++k  +kkg+rvli+DDl+AtgGt++ a+ L+k+ ++ vve+a ++elk 
  MMETSP1061-20121228|8675_1  19 AKYLPYFPFKGIdRFYDIGGFLYEPEIFQKIVDIFVERYGAIGIDSVAGLDARGFILGPPIALALKKPFIMMRKKGKMPNTIESEEYKTEYGNRsGLTVQKGKIKKGDRVLIIDDLVATGGTLSSAISLVKQCEGTVVECACVVELKM 166
                 567899******66******************************************************************************9878**************************************************86 PP

>> TIGR01743  purR_Bsub: pur operon repressor PurR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   6.4e-16   2.9e-13     104     233 ..      37     164 ..      31     169 .. 0.91

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 6.4e-16
   TIGR01743 104 tdllskPsilskiakilasvfaekeidavvtvetkGvPlayavakvlnvslvivrkdskvteGstvsinyvsGssdriqkmslakrslkkGskvllvddflkaGGtvkGlielleefdaelvGigvlidn 233
                   +l++P i +ki  i+++ +    id v  ++++G  l   +a  l+ +++++rk  k+ + ++ s +y +   +r   +++ k  +kkG +vl++dd++ +GGt+   i+l+++ +  +v  + +++ 
  MMETSP1061-20121228|8675_1  37 GGFLYEPEIFQKIVDIFVERYGAIGIDSVAGLDARGFILGPPIALALKKPFIMMRKKGKMPN-TIESEEYKTEYGNR-SGLTVQKGKIKKGDRVLIIDDLVATGGTLSSAISLVKQCEGTVVECACVVEL 164
                 56799******************************************************976.46688888776666.679999*************************************999988875 PP

>> TIGR01744  XPRTase: xanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   4.8e-15   2.2e-12      31     156 ..      42     164 ..      31     175 .. 0.87

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 4.8e-15
   TIGR01744  31 daklmrevgeefarrfadkgitkiltieasGiaPaimtalkldvPvvfakkk..kpltltdqlltasvvsftkskestvivskeflsdedrvliiddflanGdaarglvdivkqagakivGlGiviek 156
                 ++++ +++ + f +r+   gi  +  ++a G      +al l+ P +  +kk   p+t++ + ++++      ++ s ++v k  + + drvliidd++a+G+++ + +++vkq++ ++v   +v+e 
  MMETSP1061-20121228|8675_1  42 EPEIFQKIVDIFVERYGAIGIDSVAGLDARGFILGPPIALALKKPFIMMRKKgkMPNTIESEEYKTE-----YGNRSGLTVQKGKIKKGDRVLIIDDLVATGGTLSSAISLVKQCEGTVVECACVVEL 164
                 68899**************************877777788889999998886225777777666665.....5677899***********************************************94 PP

>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   5.8e-14   2.7e-11      25     156 ..      33     183 ..      29     201 .. 0.75

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 5.8e-14
   TIGR00336  25 yvdlklantgkelanliaeliaalvkdelefdviaGpalkgiPiaaavsvklakpeg......diqllivRkeaK.dhGeggki...vGelkegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqev..........saeeev 156
                 + d++ +  ++e+ + i  +  +     + +d +aG+   g  ++  ++++l+kp        +++  i   e K ++G+   +    G++k+g++v++++D+++tG+ + +a+  +++ +++v+++  v++ +            s ++++
  MMETSP1061-20121228|8675_1  33 FYDIGGFLYEPEIFQKIVDIFVERYGA-IGIDSVAGLDARGFILGPPIALALKKPFImmrkkgKMPNTIESEEYKtEYGNRSGLtvqKGKIKKGDRVLIIDDLVATGGTLSSAISLVKQCEGTVVECACVVELKMFidppeesglpSRTKSF 183
                 889999999*************99996.**********9998777777777777621222223666666666655579*9876522369**************************************9999987666666666666444444 PP

>> TIGR01367  pyrE_Therm: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.3   3.4e-11   1.6e-08      92     146 ..     113     166 ..      31     199 .. 0.71

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 3.4e-11
   TIGR01367  92 gemklrrgfevkpGekvvvveDvvttGgsakeaikiieelGgqvvglaaiidrsk 146
                  ++++++g ++k+G++v++++D+v+tGg++  ai ++++  g+vv  a++++ + 
  MMETSP1061-20121228|8675_1 113 SGLTVQKG-KIKKGDRVLIIDDLVATGGTLSSAISLVKQCEGTVVECACVVELKM 166
                 34444444.67899*************************************9754 PP

>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   6.8e-09   3.1e-06     203     246 ..     117     161 ..      65     170 .. 0.70

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 6.8e-09
   TIGR01251 203 nllgdv.egkdvvivDDiisTggTlvkaaelLkekGAkkvivaat 246
                    g + +g  v+i+DD+++TggTl  a++l+k++  + v +a++
  MMETSP1061-20121228|8675_1 117 VQKGKIkKGDRVLIIDDLVATGGTLSSAISLVKQCEGTVVECACV 161
                 33444424678************************9999999887 PP

>> TIGR01203  HGPRTase: hypoxanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0     1e-06   0.00047      82     123 ..     121     163 ..      98     167 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1e-06
   TIGR01203  82 dik.dkdvLlveDivdtgltlkellellkarkpkslkivtlle 123
                 +ik +  vL+++D+v+tg tl+  ++l+k+ +   ++ + ++e
  MMETSP1061-20121228|8675_1 121 KIKkGDRVLIIDDLVATGGTLSSAISLVKQCEGTVVECACVVE 163
                 4554999***********************9999988877765 PP

>> TIGR01091  upp: uracil phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.8e-06   0.00082     119     159 ..     122     162 ..     115     170 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.8e-06
   TIGR01091 119 dieerevivlDPmlAtGgtvvealellkekgakkikvlsiv 159
                 ++++++v+++D ++AtGgt+ +a++l+k+ + + + + ++v
  MMETSP1061-20121228|8675_1 122 IKKGDRVLIIDDLVATGGTLSSAISLVKQCEGTVVECACVV 162
                 567899**********************9988888888877 PP

>> TIGR00201  comF: comF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.2e-06     0.001     118     184 ..      88     157 ..      72     163 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.2e-06
   TIGR00201 118 ivkRlkaktqkllkakeRkknlenafklkvk...evqgrkivlvDDvvttGatlaeiaklllklgaaevq 184
                 i++R+k+k  ++++++e k    n   l v+     +g ++ ++DD+v tG tl  +  l+ +     v+
  MMETSP1061-20121228|8675_1  88 IMMRKKGKMPNTIESEEYKTEYGNRSGLTVQkgkIKKGDRVLIIDDLVATGGTLSSAISLVKQCEGTVVE 157
                 5677777777777777777777777777777553457889*****************9999996665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1313.89
//
Query:       MMETSP1061-20121228|8679_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 579.29
//
Query:       MMETSP1061-20121228|8677_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1997.05
//
Query:       MMETSP1061-20121228|8680_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1174.01
//
Query:       MMETSP1061-20121228|8681_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 697.66
//
Query:       MMETSP1061-20121228|8684_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|8685_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 448.76
//
Query:       MMETSP1061-20121228|8687_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.36    7.6   6.3       0.37    7.5   4.4    1.0  1  TIGR00414 serS: serine--tRNA ligase
       0.96    5.9   7.5       0.97    5.9   5.2    1.0  1  TIGR00860 LIC: cation transporter family protein
        3.3    5.0  11.0        3.4    5.0   7.6    1.2  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   4.4   0.00027      0.37      65     139 ..       4      79 ..       1      96 [. 0.69

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00027
   TIGR00414  65 aekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnl.vaesvpvgkdeednlevkkegekksfdfkp 139
                 +++++k  + +++ +++k+++ e +++ k+  ++  e  ++ +n  v +++ +gk+e++nle +  + ++++++++
  MMETSP1061-20121228|8687_1   4 QQQQQKQRRQQQQQQKQKQQVRESSTKAKTRPTRRIETSSNTSNDdVGDDLDMGKTENQNLETDSALPREEATISQ 79 
                 2222222334678888999999999888877665555555555544899999999999999999887776666654 PP

>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.2   0.00071      0.97     333     399 ..       4      69 ..       1      97 [. 0.49

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00071
   TIGR00860 333 kksakkkrklllerlarllkkkeegeekrrpaleakelsslelrakkggedleskteeeallksvpp 399
                 +++++k+r + +++++++++ +e+++++++  ++ +e +s ++++ ++g+dl+  ++e+++l++  +
  MMETSP1061-20121228|8687_1   4 QQQQQKQRRQQQQQQKQKQQVRESSTKAKTRPTRRIE-TSSNTSNDDVGDDLDMGKTENQNLETDSA 69 
                 2222223333333333333333333333322333333.34445555666999987777776664433 PP

>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.6    0.0025       3.4      26      63 ..       4      44 ..       1      83 [. 0.41

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0025
   TIGR03593 26 kpepqkppaaaqqaesqsaa...aaaaasaaaaasadapsa 63
                ++++qk+  ++qq+++q+++   ++++a+++++   +++s+
  MMETSP1061-20121228|8687_1  4 QQQQQKQRRQQQQQQKQKQQvreSSTKAKTRPTRRIETSSN 44
                11111222222222222222222212222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       575  (0.140176); expected 82.0 (0.02)
Passed bias filter:                      369  (0.0899561); expected 82.0 (0.02)
Passed Vit filter:                        65  (0.0158459); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.19s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 480.82
//
Query:       MMETSP1061-20121228|8682_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.41
# Mc/sec: 2115.04
//
Query:       MMETSP1061-20121228|8689_1  [L=795]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-16   58.0   1.6    8.5e-09   32.0   0.0    4.4  5  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)


Domain annotation for each model (and alignments):
>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0     0.018        74      11      48 ..      40      85 ..      32     118 .. 0.62
   2 ?   -3.8   0.0      0.15     6e+02      80     108 ..     160     188 ..     152     191 .. 0.83
   3 !    5.9   0.6   0.00017      0.69     215     287 ..     337     409 ..     235     413 .. 0.67
   4 !   32.0   0.0   2.1e-12   8.5e-09     320     425 ..     465     565 ..     448     596 .. 0.92
   5 !   14.4   0.0   4.7e-07    0.0019     455     584 ..     644     765 ..     604     767 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.018
   TIGR00578 11 grdsliflvdaskamfeevdged........eltpfdmsikaiksv 48
                g   +i lvd    mfe+ ++          e++p ++sik+i++ 
  MMETSP1061-20121228|8689_1 40 GAHHVIALVDCHPDMFEKRKSTTdenyekvpEAAPVELSIKVIQTF 85
                4567899*********976542211122222567777788877764 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.15
   TIGR00578  80 iyvlqdldnPGakrvleldklkgdeGkkk 108
                 ++ l dl+ PG k+   l+ l +d+ kk+
  MMETSP1061-20121228|8689_1 160 VHRLLDLEPPGIKHAKTLQSLLSDDQKKR 188
                 6678999******9999999999977665 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.00017
   TIGR00578 215 skleellkkvraketkkralsrlklklgkdvklsvgiynlvqkalkPapvklyretneevktktrtfnvdtge 287
                 + +e++ kk r+       l r k   +kd ++++  y +vq + +P  v++ +et  e    + t + dtg+
  MMETSP1061-20121228|8689_1 337 DEFENMNKKRRTYYGPMHILRRGKNTKEKDSSIMIDWYSVVQLSRRPGKVQIDKETKRETIKVRYTLEKDTGK 409
                 23344444444444445567788888999***************************99888888899888885 PP

  == domain 4    score: 32.0 bits;  conditional E-value: 2.1e-12
   TIGR00578 320 ePGllllGfkPlsllkkqhylrPslfvyPeeslvrGsttlfsalllkclekkvaalcryis.rrnvaPklvalvpqeeelddqkiqvvPpGfqlvflPfaddkrkld 425
                  PGl +lGfk    +  +h    +  ++P+++ v+Gs + f  l    l+k+v+ +   ++ r+n   +lva+ p e           P G+ +  lPf dd r + 
  MMETSP1061-20121228|8689_1 465 APGLTVLGFKSRDAIPFHHSTSKTFVIFPNDTDVQGSRNAFDHLHAAMLRKNVLGVGEVLHnRENSQSRLVAIYPFEST------SYLPHGMYVATLPFEDDMRAVA 565
                 6*********************9999******************************987753889999*******9864......579****************885 PP

  == domain 5    score: 14.4 bits;  conditional E-value: 4.7e-07
   TIGR00578 455 sfenPvlqqhfrnlealaldlleaeqakdltlPkveklkkrlGelvdefkelvyPpdyapegkvakrkqagegsaskkpkvelseeelreevkkGtlgkltvsvlkdickaeGlrsgskkqelldalkkh 584
                 +fen  l ++++ l+++ ++ ++ e   d t+ + e + + + ++++ fk    P d + e+ +  rk++ +    k p  ++s+ +  e  +   +g+  +  lk+  +  Gl ++++k +l++ +++ 
  MMETSP1061-20121228|8689_1 644 HFENAALTEFYSYLKSVVFNTVKEEMDYDTTI-DPELVLEIARKEIETFKSF-LPIDVEQEATAPSRKRERN----KVP--DTSGINWEELYRTDDVGSCKMDLLKQYLRSVGLPTSGRKSDLVERVTRS 765
                 7************************9999886.67888888999*****986.6889888888888877543....333..456667777889999*****************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.33
# Mc/sec: 3179.74
//
Query:       MMETSP1061-20121228|8686_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1614.33
//
Query:       MMETSP1061-20121228|8683_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1610.27
//
Query:       MMETSP1061-20121228|8691_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 327.10
//
Query:       MMETSP1061-20121228|8690_1  [L=682]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 3104.02
//
Query:       MMETSP1061-20121228|8693_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1170.69
//
Query:       MMETSP1061-20121228|8694_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-06   24.5   0.0      1e-05   23.4   0.0    1.5  1  TIGR00586 mutt: mutator mutT protein
    4.7e-05   20.8   0.1    7.7e-05   20.1   0.1    1.3  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     5e-09     1e-05      32      62 ..     141     171 ..     122     180 .. 0.80

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 5e-09
   TIGR00586  32 nklefPGGkieaGetpeqavvrelqeevgit 62 
                 + +  PGGk+e Get+ +  +rel eev  +
  MMETSP1061-20121228|8694_1 141 GGWAIPGGKLEWGETTLEGAKRELAEEVVFV 171
                 56999**********************9765 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   3.7e-08   7.7e-05      43      72 ..     139     168 ..     126     175 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.7e-08
   TIGR02705  43 kkRGlefPGGkveegetskeaaiRevleet 72 
                 +k G   PGGk e get+ e a+Re+ ee 
  MMETSP1061-20121228|8694_1 139 NKGGWAIPGGKLEWGETTLEGAKRELAEEV 168
                 5668899*********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 1270.40
//
Query:       MMETSP1061-20121228|8692_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.76    5.1  25.9      0.016   10.7   3.4    2.1  2  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.4   3.8e-06     0.016     968    1003 ..     176     210 ..     126     227 .. 0.56
   2 ?    0.2   9.0    0.0055        23     976    1004 ..     250     278 ..     236     291 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.8e-06
   TIGR00927  968 eggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeen 1003
                  eg +d  d +++    e+ ++eee   eeeeee+e 
  MMETSP1061-20121228|8692_1  176 EGSNDDSDDDDDATGSED-DDEEETASEEEEEEDET 210 
                  333332222222211111.11111111222222221 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.0055
   TIGR00927  976 seeeeeeeeeeeeeeeeeeeeeeeeeene 1004
                   eeeeeee+ee++ee+++++++++e++n+
  MMETSP1061-20121228|8692_1  250 CEEEEEEEDEEKKEENDNDNDDDDENKNK 278 
                  56777777776666666665555555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 2532.54
//
Query:       MMETSP1061-20121228|8698_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 550.91
//
Query:       MMETSP1061-20121228|8697_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1490.38
//
Query:       MMETSP1061-20121228|8696_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 740.08
//
Query:       MMETSP1061-20121228|8701_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 1733.07
//
Query:       MMETSP1061-20121228|8702_1  [L=1239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       657  (0.160166); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.14s 00:00:00.77 Elapsed: 00:00:00.48
# Mc/sec: 3406.97
//
Query:       MMETSP1061-20121228|8704_1  [L=952]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18    9.0   9.5       0.32    8.2   6.6    1.3  1  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   6.6   7.8e-05      0.32     149     220 ..     334     405 ..     320     446 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 7.8e-05
   TIGR00570 149 ealelekeeeekkrlllqkl..eeeekkkkkkdkqalldeLetsdldvaeliaehkeksvklekeveklksekk 220
                 +a+ + + + ++k+++ q l     ++++++ + qall+ L++ +++va++i +  ++ ++++++ ++++  ++
  MMETSP1061-20121228|8704_1 334 QAQTQAQAQAQAKQQQQQALqqQALQQQQQAMQVQALLNGLTNGSNPVATMILNQLAQQQQQQQRRQQQQ--QL 405
                 4444444444444444444400445788888999**************9988774443333333322222..22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (952 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       670  (0.163335); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.60u 0.15s 00:00:00.75 Elapsed: 00:00:00.45
# Mc/sec: 2792.30
//
Query:       MMETSP1061-20121228|8705_1  [L=679]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 2560.59
//
Query:       MMETSP1061-20121228|8703_1  [L=1210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.3   0.1      0.045   10.6   0.1    1.3  1  TIGR00991 3a0901s02IAP34: GTP-binding protein
      0.029   12.1   0.1       0.41    8.4   0.0    2.4  2  TIGR00150 HI0065_YjeE: ATPase, YjeE family


Domain annotation for each model (and alignments):
>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   2.2e-05     0.045      19      63 ..       2      46 ..       1      60 [. 0.91

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.2e-05
   TIGR00991 19 atqtkllellgklkeedvssltilvmgkggvgksstvnsiigerv 63
                a ++kll ll  +     +sl ++v+g  gvgk+s v   + e++
  MMETSP1061-20121228|8703_1  2 AQDSKLLSLLNSILASRTTSLKMVVVGNEGVGKTSFVRRFVAEQL 46
                5679**********************************9999986 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.0    0.0002      0.41      11      51 ..      10      51 ..       1      58 [. 0.67
   2 ?    0.6   0.0     0.048        99      86     131 ..     137     183 ..     126     186 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0002
   TIGR00150 11 lgkklakaldlatvvlLkGdlGaGKttlvkgl.lkglGiqge 51
                l ++++ +  ++  +++ G+ G GKt++v+ + +++lGi  +
  MMETSP1061-20121228|8703_1 10 LLNSILASRTTSLKMVVVGNEGVGKTSFVRRFvAEQLGIAEK 51
                44455444444444556799*********9863789**9865 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.048
   TIGR00150  86 llgleeylekegiilvEWpekkleklp.eedlqikikevgdereiel 131
                 +   e +++ +++ +v W   + ++ p e++ +i++ e +++ ++ +
  MMETSP1061-20121228|8703_1 137 YAIQEMFFTPQTLYVVVWDMAARDITPmERECAISLSENESKDNADF 183
                 55567788889****************99*******99998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.13s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 3895.29
//
Query:       MMETSP1061-20121228|8707_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 775.44
//
Query:       MMETSP1061-20121228|8709_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1027.22
//
Query:       MMETSP1061-20121228|8706_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-38  129.3  14.1    2.1e-35  119.0   6.9    2.1  2  TIGR01100 V_ATP_synt_C: V-type ATPase, C subunit
  ------ inclusion threshold ------
      0.033   12.3   2.5        1.1    7.4   0.0    2.2  2  TIGR03932 PIA_icaD: intracellular adhesion protein D


Domain annotation for each model (and alignments):
>> TIGR01100  V_ATP_synt_C: V-type ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   6.9     1e-38   2.1e-35       2     108 .]      18     129 ..      17     129 .. 0.94
   2 !   12.4   0.1   1.5e-05      0.03      38      68 ..     166     196 ..     153     200 .. 0.85

  Alignments for each domain:
  == domain 1    score: 119.0 bits;  conditional E-value: 1e-38
   TIGR01100   2 fgvlGaaaalvfsalGaayGtaksgvGiaalgvlrpelilksiipvvmaGiiaiyGlvvavliagslkek.....ekyslykgfihlgaGlavGlsglaaGlaiGivGdagv 108
                 fg+lGa+  +++s+ G+a+Gt ++g G++++g+ +p+ i+k+i+p+vmaG+++iyGl+v+v+i++s+++      ++ys+++g++hl+aG+++Gls laaG +iGi+Gdagv
  MMETSP1061-20121228|8706_1  18 FGYLGASGCMILSSWGSAWGTWRAGLGVCHMGIDHPKGIIKNIVPIVMAGVLGIYGLIVSVIITQSISSPggdgyNTYSVFNGYVHLAAGMCCGLSCLAAGGTIGIIGDAGV 129
                 9******************************************************************87423222459********************************98 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 1.5e-05
   TIGR01100  38 elilksiipvvmaGiiaiyGlvvavliagsl 68 
                 +l +  +i ++++  +a+yGl+va++++++l
  MMETSP1061-20121228|8706_1 166 KLYVGMLIMLIFSEALALYGLIVALILSQNL 196
                 5667778999*****************9987 PP

>> TIGR03932  PIA_icaD: intracellular adhesion protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0   0.00052       1.1       7      36 ..      56      85 ..      53      97 .. 0.88
   2 ?    4.0   0.8    0.0059        12      11      34 ..     172     195 ..     164     200 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00052
   TIGR03932  7 ilrEivlfiislvfWlYclivvivligtlf 36
                i+++iv +++++v+ +Y liv +++  +++
  MMETSP1061-20121228|8706_1 56 IIKNIVPIVMAGVLGIYGLIVSVIITQSIS 85
                78999***************9999887776 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0059
   TIGR03932  11 ivlfiislvfWlYclivvivligt 34 
                  +++i s ++ lY liv ++l   
  MMETSP1061-20121228|8706_1 172 LIMLIFSEALALYGLIVALILSQN 195
                 6899*************9998655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1205.90
//
Query:       MMETSP1061-20121228|8708_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-07   29.8   6.1      1e-07   29.8   4.2    2.1  2  TIGR03902 rhom_GG_cterm: rhombosortase


Domain annotation for each model (and alignments):
>> TIGR03902  rhom_GG_cterm: rhombosortase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   4.2   2.5e-11     1e-07      10     152 ..     375     519 ..     371     521 .. 0.78
   2 ?   -1.8   0.1      0.14   5.9e+02      77      96 ..     536     555 ..     521     564 .. 0.74

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 2.5e-11
   TIGR03902  10 aiaegewWRlltghlvHlnwaHlllnlagllllvllferrlrarrllllllllsllislglllllpeleaYvGLSGvlhGlfalgalrdirkkrkss...wl.lllgvlaklaleqltgasastaeligarvaveaHlaGalsGlll 152
                  ++e+++ Rl+t +++H++  Hll+n+   l +++ +er++   +++l++l+++++ sl+   ++p++   +  SG+l Glf + + + i  +  +s   ++    +++ +l   +  +a +++  +    + +  Hl G+++G+l+
  MMETSP1061-20121228|8708_1 375 LVEEQQYFRLITPTFLHVGYLHLLVNAFFQLETCAYLEREWGFVSWFLIYLMSGFGASLAASTIDPNVIGVC-SSGALMGLFGARIAQAIVWSVFESrneYVgQGTLIFERLGGTVCSAAVVFFLTF-LTYIDWSGHLGGLVTGFLT 519
                 5899***************************************************************99866.6*******9888777766544433111333555555566666666666665555.4455567788888888775 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.14
   TIGR03902  77 leaYvGLSGvlhGlfalgal 96 
                 + ++ GL G+++G ++lg l
  MMETSP1061-20121228|8708_1 536 TLRFIGLLGLMTGGMVLGYL 555
                 56778888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2591.39
//
Query:       MMETSP1061-20121228|8710_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.33
# Mc/sec: 1619.87
//
Query:       MMETSP1061-20121228|8711_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 2870.76
//
Query:       MMETSP1061-20121228|8713_1  [L=857]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.17    7.8   2.6       0.32    6.9   1.8    1.4  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter


Domain annotation for each model (and alignments):
>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   1.8   7.7e-05      0.32     509     604 ..     364     469 ..     334     520 .. 0.61

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 7.7e-05
   TIGR00844 509 rrr..rrqklrdkkeieddielndlg..rerlqkekearaatidlstavteqlgeeig..ragdleere...kvnikerseavntiysldkl.aedtenkdvtrve 604
                 r+r   +qk+ +++ +e+++e ++    + +++k++e++  t dls+++ e+ + + +   a+  + r+   +v++ e  e++ t + l +   ++t+ +d t+++
  MMETSP1061-20121228|8713_1 364 RKRqlSKQKIAEREAMEQEQEQEQNQaeQIQVEKKHEEQQPTQDLSETAVEEVNPNPThsSASVCASRSlwtEVTVEEDEEEFPTNHRLRSHpFDETNVNDTTYIP 469
                 333447899988877777666555550055556778999*******999888775544003444444441113334444455555555544413556666766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (857 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       289  (0.0704534); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 2693.21
//
Query:       MMETSP1061-20121228|8714_1  [L=741]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.60
# Mc/sec: 1630.07
//
Query:       MMETSP1061-20121228|8716_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   11.8   0.0      0.036   11.8   0.0    1.2  1  TIGR03865 PQQ_CXXCW: PQQ-dependent catabolism-associated CXXCW motif protein


Domain annotation for each model (and alignments):
>> TIGR03865  PQQ_CXXCW: PQQ-dependent catabolism-associated CXXCW motif protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.9e-06     0.036      17      52 ..      39      74 ..      22     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.9e-06
   TIGR03865 17 egyRteeyRapvPatlkgarvldteeleallaegaa 52
                e+yR ++y  + P+  k+  v++ + + al++++++
  MMETSP1061-20121228|8716_1 39 EQYRAQNYQQELPSRFKKEMVVQCHRTAALVESKSS 74
                69**************************99998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 728.81
//
Query:       MMETSP1061-20121228|8719_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1061-20121228|8720_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 521.36
//
Query:       MMETSP1061-20121228|8718_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1231.90
//
Query:       MMETSP1061-20121228|8721_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-16   56.2   0.0    8.4e-16   56.0   0.0    1.1  1  TIGR00111 pelota: putative translation factor pelota
  ------ inclusion threshold ------
      0.018   11.7   0.0      0.022   11.4   0.0    1.3  1  TIGR03676 aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms


Domain annotation for each model (and alignments):
>> TIGR00111  pelota: putative translation factor pelota
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   4.1e-19   8.4e-16     287     351 .]       2      71 ..       1      71 [. 0.90

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 4.1e-19
   TIGR00111 287 kaleygaievLLvaDkv.....lve.reeieklldsveesGGkvvilsteheaGkqLesLgGiaglLrfki 351
                  a+e  ai+ LLv+D++       + r+e+  l++sv e+GG v + st+h +G+qL++++G+a++Lr+++
  MMETSP1061-20121228|8721_1   2 SAAEQMAIDSLLVTDQLfrassP-KvRREYVDLVESVRENGGTVYVFSTLHVSGQQLQQVSGVAAILRYPL 71 
                 58999************765542.23689999*************************************96 PP

>> TIGR03676  aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.1e-05     0.022     363     402 ..      32      70 ..       4      71 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.1e-05
   TIGR03676 363 elvelaeesgakveiistdteegeqllkaFgGiaaiLryk 402
                 +lve + e g +v + st    g+ql +   G+aaiLry 
  MMETSP1061-20121228|8721_1  32 DLVESVRENGGTVYVFSTLHVSGQQLQQV-SGVAAILRYP 70 
                 588999999*****************998.9********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 665.95
//
Query:       MMETSP1061-20121228|8724_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 757.50
//
Query:       MMETSP1061-20121228|8726_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-20   71.2   7.4    1.9e-20   70.9   5.1    1.1  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   5.1   4.7e-24   1.9e-20     245     385 ..      13     156 ..       9     171 .. 0.92

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 4.7e-24
   TIGR00797 245 GstalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpkrakevarvalklglllglvlaiililf...refiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpllfllg 385
                 G + ++ahq+a+q++ l++++ + la+A + lv+ a+G gd  +++++ r+++  + +lg++la +l+++     f+ + ft+dp  +++   +  +++++qp+++l f  dGvl+Ga+++ + a +++vs +v  +++  l +
  MMETSP1061-20121228|8726_1  13 GVAFISAHQIAIQLWMLCSYISDALAAASQGLVADAIGRGDEGDVRDISRTVFAYSAVLGVLLAGLLFAGfysTDFLVGFFTSDPGTQTALLEIASLLVVSQPLNSLVFAADGVLQGASEFPYQAKSMIVSGFVASVCFFALQS 156
                 557899**********************************************************999987222556**************************************************************988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|8728_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 479.96
//
Query:       MMETSP1061-20121228|8725_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1545.05
//
Query:       MMETSP1061-20121228|8729_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 931.69
//
Query:       MMETSP1061-20121228|8723_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   25.3   4.8    1.2e-06   25.3   3.3    1.7  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    0.00013   19.4   3.7     0.0036   14.7   0.6    2.2  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    0.00016   17.5   7.4    0.00016   17.5   5.1    1.4  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
        1.3    5.9  12.4       0.12    9.3   4.1    2.0  2  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   3.3   1.1e-09   1.2e-06     119     250 ..      75     205 ..      58     215 .. 0.78
   2 ?   -3.6   4.4      0.63   6.5e+02      60      97 ..     201     240 ..     187     245 .. 0.48

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.1e-09
   TIGR00990 119 seeerkkyaaklkekGnkayrnkdfdkaielyskalllk.edPvyysnraacynaladlekvvedttaaleldpdyvkalnrran.aydqlgkyadalldltassliddfrdeqsaqaverllkkfaeskakei 250
                    e  +    lk k   a ++ + ++a+e y++a+l   +  + y+nr+     l++++    d   ale +pd  kal+ r +  y +l  +  al dl+    id f   ++a+++  l kk  e k ke 
  MMETSP1061-20121228|8723_1  75 VSGEDYEKQSDLKAKAADAKNSGNLEEALEHYNQAVLAApPSALLYANRSIVLEKLGHYQAAEVDCKLALEQNPDSAKALKTRGKlRYMHLNDWEGALRDLSQAQSID-FD-PEVADILKALTKKRIE-KEKEE 205
                 555555566789999999*****************9876257899***********************************99987369*************9776664.64.4566777665555544.44443 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.63
   TIGR00990  60 qeqkeskpklskke..rrkrkdaekeaekkaeekkstapk 97 
                 +e+ e +++++k+e  r+k  d +++ e++  e++  a+k
  MMETSP1061-20121228|8723_1 201 KEKEEAHERIQKEEamRKKAEDIKRAQEEAKREAEEAAAK 240
                 4444555666666633333333333333333333333333 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.6   3.5e-06    0.0036      43     102 ..      95     154 ..      71     159 .. 0.93
   2 !    5.5   0.1    0.0023       2.4      39      90 ..     160     212 ..     153     226 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3.5e-06
   TIGR02521  43 eqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvl 102
                 ++g+le+A e  ++A+ ++p +a  ++ + +++++lg+ ++Ae   + Al+++p+++++l
  MMETSP1061-20121228|8723_1  95 NSGNLEEALEHYNQAVLAAPPSALLYANRSIVLEKLGHYQAAEVDCKLALEQNPDSAKAL 154
                 689****************************************************99875 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0023
   TIGR02521  39 leYleqgdlekAkenlekAleldpkdadanlalAlyyqqlg.elekAeesfrk 90 
                 l+Y++ +d e A ++l +A  +d + + a    Al  +++  e+e+A+e+ +k
  MMETSP1061-20121228|8723_1 160 LRYMHLNDWEGALRDLSQAQSIDFDPEVADILKALTKKRIEkEKEEAHERIQK 212
                 79*****************9999999999888898888875478888887765 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   5.1   1.5e-07   0.00016     120     247 ..      79     207 ..      73     228 .. 0.60
   2 ?   -2.4   1.1      0.16   1.7e+02     115     155 ..     201     241 ..     186     243 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.5e-07
   TIGR02917 120 ddeeaaellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalvdevLtadpknvdAllLkgdllls.sgnieeAlaayrkaielkpnaiaallalati..lleegefeeAe 247
                 d e+++ l+a +++A+ ++g+leeA + ++qA  +ap s+   +    ++ + + ++ a+     +L+++p+ ++Al  +g+l ++ +++ e Al ++ +a  ++++ + a + +a +  ++e +e eeA+
  MMETSP1061-20121228|8723_1  79 DYEKQSDLKAKAADAK-NSGNLEEALEHYNQAVLAAPPSALLYANRSIVLEKLGHYQAAEVDCKLALEQNPDSAKALKTRGKLRYMhLNDWEGALRDLSQAQSIDFDPEVADILKALTkkRIE-KEKEEAH 207
                 5566666766666665.6777777777777777777765444444444444444777777777777777777777777777777662466777777777777776665555554443311343.3344444 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.16
   TIGR02917 115 kksslddeeaaellalrglAaLglgeleeAqksleqAlaia 155
                 k++ +++e   +  a+r +A+ +++ +eeA+++ e+A+a++
  MMETSP1061-20121228|8723_1 201 KEKEEAHERIQKEEAMRKKAEDIKRAQEEAKREAEEAAAKS 241
                 33334445555667888889999999999999999998876 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3     0.064        65      62     103 ..      44      88 ..       4     102 .. 0.45
   2 ?    9.3   4.1   0.00011      0.12       7      67 ..     186     246 ..     181     256 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.064
   TIGR01554  62 eaasgeagkeeeeeeeakeeaaea...fraylrrgddalaeeaka 103
                 e ++g++g+e++++ +a+e +++    + +y+ ++d +  ++ ka
  MMETSP1061-20121228|8723_1  44 ETTDGDGGGETNNGGNAAEDMEDDgftVPQYVSGEDYEKQSDLKA 88 
                 222222222222222222222222544566777777776666333 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.00011
   TIGR01554   7 klaelakelkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasge 67 
                 ++a+  k+l+k+  ++++eea+e+ ++++a++++ ++++ + e+++++a+e++ak a +g+
  MMETSP1061-20121228|8723_1 186 EVADILKALTKKRIEKEKEEAHERIQKEEAMRKKAEDIKRAQEEAKREAEEAAAKSAGMGG 246
                 5677788888888888888888989999999999999998888888888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       366  (0.0892248); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1507.88
//
Query:       MMETSP1061-20121228|8732_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 401.71
//
Query:       MMETSP1061-20121228|8731_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1697.00
//
Query:       MMETSP1061-20121228|8727_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-10   38.8   0.0    1.5e-10   38.3   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    2.2e-09   34.5   0.0    4.3e-09   33.6   0.0    1.3  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    7.4e-07   26.2   0.0    9.4e-07   25.9   0.0    1.2  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
    6.4e-05   20.0   0.0    9.1e-05   19.5   0.0    1.2  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.4e-13   1.5e-10      10     236 ..      73     294 ..      65     298 .] 0.81

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.4e-13
   TIGR02160  10 rrltadaveisfevPeelaedyrfepGqhltlkaeldGeelrrsysicdavadgeirva..vkkieGGlfstwaneeiraGdtlevmaP.qGrftskldaer......akhyvavaaGsGitPilaivkt.vlaaepkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreereaellsGrldgeklkalldslievdevdeaflcGPaalvddaedalkalGvdsekv 236
                  ++++++v +++++P e a+d++ +pGq+++l+ + + + +    +i + ++ ++ r    vkk +     tw++++  +  tle+ +   G f  k + ++       ++ +++aaGsGi Pi + +++  l++    t  l y+ r+++++ + + +  l +k  + ++++ vls+    +e  +Gr      +al +  ++v +   a +cG +++ + + d l+ +G  +++v
  MMETSP1061-20121228|8727_1  73 GNMSKESVVVNLAIPPETAQDFT-IPGQYVQLRPNEETKPIF--LAIASPPDAENARFEflVKKTDD---NTWLTDG--SASTLEISQVlGGGFPVKEELDSlkydfpCQNILLFAAGSGISPIRSAIESgELQTTGARTARLYYGARNEDDLCYVDRFP-LWEK--NGVEVVPVLSQP---SESWQGRTGY-VQNALEEDGVPVPRNTGALMCGMKGMTEAVTDILTKAGTFEGRV 294
                 567899****************8.7********986666554..46666666666665411666654...79***98..5679998765157898888888777999888899***********988876379***********************9986.6555..4689999**986...5667888644.45789999****************************99887776 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   4.2e-12   4.3e-09     273     396 ..     176     292 ..     169     297 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 4.2e-12
   TIGR01941 273 lvfigGGaGmaplrshildllkrlkskrkisfwyGarskrevfyeedfdeleaendnfkyhvalsdplpednwtGytgfihnvlyenylkdhdapediefymcGpplmnaaviklledlGvere 396
                 ++  + G+G++p+rs i     +    r   ++yGar + +  y + f   e++    +   +ls  +p + w+G+tg++ n+l e+     + p ++   mcG   m+ av ++l++ G  + 
  MMETSP1061-20121228|8727_1 176 ILLFAAGSGISPIRSAIESGELQTTGARTARLYYGARNEDDLCYVDRFPLWEKNG--VEVVPVLS--QPSESWQGRTGYVQNALEEDG---VPVPRNTGALMCGMKGMTEAVTDILTKAGTFEG 292
                 6677899***********99999999**********************9877654..44445676..6789*************9985...689***********************9997655 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   9.2e-10   9.4e-07     262     385 ..     168     287 ..      97     296 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 9.2e-10
   TIGR03224 262 mpnhpessilmictgtgsapmramterrrrrrakgeggklllffgartkeelpyfgplqklpkdfidinfafsrtpeepk...ryvqdaireraadvaallkddntyiyvcglkgmeegvlealrev 385
                   + p  +il+  +g+g +p+r+  e    +++ + +    l++gar++++l y   +    k+ +++   +s+  e  +    yvq+a+ e  + v +     nt   +cg+kgm e v + l + 
  MMETSP1061-20121228|8727_1 168 KYDFPCQNILLFAAGSGISPIRSAIESGELQTTGART--ARLYYGARNEDDLCYVDRFPLWEKNGVEVVPVLSQPSESWQgrtGYVQNALEEDGVPVPR-----NTGALMCGMKGMTEAVTDILTKA 287
                 55678899****************9988766555444..4589*************9999999999999999987775432126*********999875.....788899*********99988765 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   8.9e-08   9.1e-05      99     213 ..     173     288 ..     140     296 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 8.9e-08
   TIGR02911  99 dkelvvvaggtgvapvkgvveyfaknskevkeldlivgfktredilfkedlaewkek.inlvltldeaeeddkykvglvtkyiaelklkdieevqvivvgppimlkftvkellkkg 213
                  +++++ a g+g++p++  +e    ++  ++   l  g ++++d+ + + +  w+++ +++v  l +  e  ++++g v + ++e  +    +  +++ g   m +  ++ l k g
  MMETSP1061-20121228|8727_1 173 CQNILLFAAGSGISPIRSAIESGELQTTGARTARLYYGARNEDDLCYVDRFPLWEKNgVEVVPVLSQPSESWQGRTGYVQNALEEDGVPVPRNTGALMCGMKGMTEAVTDILTKAG 288
                 46899*************************************************8873678888999999************9998888888888888888777766666665655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1311.09
//
Query:       MMETSP1061-20121228|8736_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 534.24
//
Query:       MMETSP1061-20121228|8734_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.13    8.5   5.6       0.16    8.2   3.9    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   3.9   3.8e-05      0.16     336     428 ..      15     107 ..       3     119 .. 0.48

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 3.8e-05
   TIGR02442 336 deekedeseekekeeskkqe....eeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrsdkrgryvkaern 428
                 +++  +++ +++++++ +++    ++++ ++de+++++ ++++++    e++++ ++ ++++ +++++s   a+g+ Grr k+ s++++++   +++
  MMETSP1061-20121228|8734_1  15 KPSGAKNHLRRKRSDDDESDrpgtSTNNSNKDENNDNADNDNDDS----ESSTAIAIRNTMKKQKILASLPIATGGGGRRWKSGSNSNSNSNTISIS 107
                 223333332222222222221112333333333333333333333....334555555566655555555559999999999888666655554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 844.73
//
Query:       MMETSP1061-20121228|8737_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 409.86
//
Query:       MMETSP1061-20121228|8735_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-149  495.1   0.0   3.4e-149  494.9   0.0    1.0  1  TIGR00263 trpB: tryptophan synthase, beta subunit
    8.4e-49  164.2   0.0    2.7e-48  162.6   0.0    1.6  1  TIGR01415 trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
    8.8e-12   42.3   0.0    1.4e-11   41.6   0.0    1.2  1  TIGR02079 THD1: threonine dehydratase
    4.9e-10   36.7   0.1    1.2e-09   35.4   0.1    1.5  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
      9e-09   32.9   0.1    5.4e-07   27.1   0.0    2.8  2  TIGR01136 cysKM: cysteine synthases
    1.3e-08   32.3   0.0    1.3e-06   25.7   0.0    2.7  2  TIGR01139 cysK: cysteine synthase A
    1.3e-08   32.1   0.0    2.4e-06   24.7   0.0    2.3  3  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    1.8e-08   31.5   0.1    4.7e-08   30.2   0.1    1.6  2  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
      2e-07   28.7   0.0    1.3e-05   22.7   0.0    2.5  3  TIGR01138 cysM: cysteine synthase B
    6.6e-05   19.5   0.0    9.3e-05   19.0   0.0    1.2  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    6.9e-05   20.0   0.0     0.0028   14.7   0.0    2.3  2  TIGR00260 thrC: threonine synthase
    0.00015   18.4   0.0     0.0054   13.3   0.0    2.5  3  TIGR01137 cysta_beta: cystathionine beta-synthase
    0.00059   17.1   0.0     0.0012   16.0   0.0    1.5  1  TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family


Domain annotation for each model (and alignments):
>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  494.9   0.0  1.1e-151  3.4e-149       3     383 ..      23     413 ..      21     415 .. 0.96

  Alignments for each domain:
  == domain 1    score: 494.9 bits;  conditional E-value: 1.1e-151
   TIGR00263   3 fg...efGGqyvpevllealeelekayekakkdeefkkeleellkeyagrptpltfaknlskklggakiylkredllhtGahkinnalgqallakrlGkkriiaetGaGqhGvatataaallglecevymGaedverqklnvfrmellgakvvpvtsGsktlkdavnealrdWvtsvedthyvlGsavGphPfPeivrefqsvigeevkeqileke....grlPdaviacvGGGsnaiGifaafiedeeveligveagGkGidt..ekhaatlskGkeGvlhGaktk.llqdedGqieeahsvsaGldypgvgPehaalaetgraeyeaitdeealealkllskeeGiipalesshalaaleklapklkkdeivvvnlsGrGdkdletvak 383
                 fg    +GG+++p  l++ ++ +++ay+++k+d++f +el++l ++++grp+p++++knls +lgga+iylkredl+htG+hkin  lg allakr+ k ++iaetGaGqhGva at aal+gl+ce++mG+ d+++  +nv rm++lga+vvp t+G ++lk+av++a+ +++++ e++ +++Gs+vGphPfP +vr+fq+v+g e+k q ++ +    +  Pd++iacvGGG n++G+f+af+ede+v+l+gve++G+G+++   +h+atl+ Gk+ v+hG+k + l+ +e+G+ + +hs ++GldypgvgP+h++++++gr++ye++td+e+++a+ +ls+ eG+ipales+hala+++klap+l+  ++++vn+sGrGdkdl+ v +
  MMETSP1061-20121228|8735_1  23 FGtdkIYGGAFLPPPLVPIMKAVDEAYTDIKDDPSFLAELTKLRRDFVGRPSPIFHCKNLSSELGGAQIYLKREDLNHTGSHKINHCLGEALLAKRMNKAKVIAETGAGQHGVALATCAALVGLDCEIHMGEIDIQKEWPNVRRMQVLGANVVPATHGGRSLKEAVDSAFGAYMANPEEMLFCIGSTVGPHPFPMMVRDFQAVVGYEAKDQFAKFHakdgATTPDYLIACVGGGCNSLGLFTAFLEDENVQLVGVEPAGRGLEEgeGHHSATLTLGKPAVIHGMKCYtLVNEETGEPSAVHSCASGLDYPGVGPQHSFFKDSGRVRYETATDKEVIDAFFKLSRAEGVIPALESAHALAYAMKLAPTLPPTTTILVNMSGRGDKDLDYVCD 413
                 554447*************************************************************************************************************************************************************************************************************876542124568***************************************997679*****************983557889********************************************************************************************99976 PP

>> TIGR01415  trpB_rel: pyridoxal-phosphate dependent TrpB-like enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.6   0.0   8.5e-51   2.7e-48      64     411 ..      69     410 ..      44     416 .. 0.85

  Alignments for each domain:
  == domain 1    score: 162.6 bits;  conditional E-value: 8.5e-51
   TIGR01415  64 kigrPtPlirakkleellgtkariyyksesvsptGshkintaiaqayyakkeGvkrlvtetGaGqWGsalslaaalldlkvkvfmvrvsfkqkpyrkllmelygaevipsPseltevGrkvlkedpehPGslGlaiseaieealeeedakyslGsvlnhvllhqtviGleakkqleeag.....ekPdvivgcvGGGsnfaglafPfvadklsGkedlkfiaaeskaaPkltkGeyrydfgdsag...llPllkmytlGhdfv..ppavh..agGlryhgvaPtlsllvkkGlveaeaydqeevfeaavlfakaeGivPaPesahaiavaideakkareegkekvilfslsGhGlldlka 411
                  +grP+P++  k+l   lg+ a+iy+k+e+   tGshkin  + +a  ak+    ++++etGaGq G al++ aal++l+++++m +   ++       m++ ga+v+p+    t+ G + lke  +      +a  e +  ++ +    +        v  +q+v+G eak+q+ ++       +Pd++++cvGGG n  gl   f++d+     +++++ +e++    l +Ge ++  + + g   ++  +k ytl ++ +  p+avh  a+Gl y gv P+ s +   G v  e    +ev++a  ++++aeG++Pa esaha+a a++ a  ++ ++   +il+++sG G  dl+ 
  MMETSP1061-20121228|8735_1  69 FVGRPSPIFHCKNLSSELGG-AQIYLKREDLNHTGSHKINHCLGEALLAKRMNKAKVIAETGAGQHGVALATCAALVGLDCEIHMGEIDIQKEWPNVRRMQVLGANVVPA----THGG-RSLKEAVDSAFGAYMANPEEMLFCIGSTVGPHPFPM---MVRDFQAVVGYEAKDQFAKFHakdgaTTPDYLIACVGGGCNSLGLFTAFLEDE-----NVQLVGVEPAG-RGLEEGEGHHSATLTLGkpaVIHGMKCYTLVNEETgePSAVHscASGLDYPGVGPQHSFFKDSGRVRYETATDKEVIDAFFKLSRAEGVIPALESAHALAYAMKLAPTLPPTT---TILVNMSGRGDKDLDY 410
                 58****************97.79*******************************************************************999888888*********96....5555.567777776655567777777777766644443333...34459***********987642222257*******************999984.....8999****965.6799999888766554322288889*****9876533788886689***************************************************************9995...**********999975 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   4.4e-14   1.4e-11      16     207 ..      73     282 ..      62     298 .. 0.77

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 4.4e-14
   TIGR02079  16 etPlqknerls.ekykaeiylkredlqevrsyklrGaynklkqlsdeelekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkq...kvdkvklfGgefievilvGdtfdeaaaaakkavekegktl.......ipPfddkd.iieGqgtvaveileqleee.......kidlvlvpvGGGGlisGvtsylkekskktkiigvePeGa 207
                 ++P+ + ++ls e  +a+iylkredl++  s+k+             +++k++  + aG h   +a +   +g+   ++m     ++    v ++++ G + +     G    ea   a+ a  ++ +++       + P   +  + + q+ v+ e  +q+ +         +d++++ vGGG  + G+ + + e  ++ +++gveP+G 
  MMETSP1061-20121228|8735_1  73 PSPIFHCKNLSsELGGAQIYLKREDLNHTGSHKINHCLGEALLAKRMNKAKVIAETGAGQHGVALATCAALVGLDCEIHMGEIDIQKewpNVRRMQVLGANVVPATHGGRSLKEAVDSAFGAYMANPEEMlfcigstVGPHPFPMmVRDFQAVVGYEAKDQFAKFhakdgatTPDYLIACVGGGCNSLGLFTAFLED-ENVQLVGVEPAGR 282
                 56776667776156789*****************999888766677788888888899999888887777889*******87766652225889999***************99999998766555444311222224455555505578********9997542222235679***************98887765.5789******995 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   3.9e-12   1.2e-09       9     182 ..      83     278 ..      75     284 .. 0.70

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 3.9e-12
   TIGR01127   9 lsditgaevylklenlqktGsfkirGalnkiaklseeekkrGvvaasaGnhaqGvalaakvfgikakivmPesapls...kvkatksyGaevi..Lh.GadfDeaykla..eelaeeegrvfv.......hafdDefviaGqGtlgleiledlpdv.........dtvivPvGGGGLisGvasavkklnpevkviGve 182
                  s++ ga++ylk e l +tGs+ki   l     +   +k + +    aG h    a +a   g+++ i m e  + +    v+  + +Ga+v+   h G+++ ea   a    +a+ e++ f        h+f   +v   q  +g+e+ ++ +++         d +i+ vGGG    G+ +a   + ++v+++Gve
  MMETSP1061-20121228|8735_1  83 SSELGGAQIYLKREDLNHTGSHKINHCLGEALLAKRMNKAKVIAETGAGQHGVALATCAALVGLDCEIHMGEIDIQKewpNVRRMQVLGANVVpaTHgGRSLKEAVDSAfgAYMANPEEMLFCigstvgpHPFP-MMVRDFQAVVGYEAKDQFAKFhakdgattpDYLIACVGGGCNSLGLFTAFL-EDENVQLVGVE 278
                 478889*******************9998765555555555444567999988888899*************998763335999999*****944333788899987662245566666655333333445553.345566888888887777665444443344678888888888888877765.45678888887 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.7e-09   5.4e-07       8     133 ..      74     202 ..      67     297 .. 0.83
   2 ?    1.6   0.0     0.096        30     238     293 ..     353     407 ..     343     411 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.7e-09
   TIGR01136   8 tPlvrln.lseelk.aevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpe.tmslERrkl..lkayGaelv.lteaeegmkgaiekakelaeeepeky 133
                  P+ + + ls+el  a++++K E+ n +gS K       + +A   + ++k k+i e+ +G  G+aLA  aa  g+   + m e ++ +E  ++  ++++Ga++v  t++ +  k a++ a     ++pe++
  MMETSP1061-20121228|8735_1  74 SPIFHCKnLSSELGgAQIYLKREDLNHTGSHKINHC---LGEALLAKRMNKAKVIAETGAGQHGVALATCAALVGLDCEIHMGEiDIQKEWPNVrrMQVLGANVVpATHGGRSLKEAVDSAFGAYMANPEEM 202
                 5888888777777659**************998765...57999999************************************9446677544333999****98346677778889988877777777665 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.096
   TIGR01136 238 ededaietarrlakeegilvGiSsGaavaaalkvakklekedkkivvilpdagerY 293
                 +d++ i+   +l + eg++  + s  a+a a+k+a +l  +  +i+v ++ +g++ 
  MMETSP1061-20121228|8735_1 353 TDKEVIDAFFKLSRAEGVIPALESAHALAYAMKLAPTLP-PTTTILVNMSGRGDKD 407
                 67788888889*************************998.7888888888888775 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   4.1e-09   1.3e-06       9     134 ..      75     203 ..      67     296 .. 0.68
   2 ?    2.8   0.0     0.039        12     238     291 ..     353     406 ..     348     411 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4.1e-09
   TIGR01139   9 PlvrLn.laee.akaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpe.tmslerrkl..lkayGaelv.Ltdgaegmkgaiekaeelveetpnkyl 134
                 P+ + + l +e   a++++k e ln ++s k       + +a  ++ ++k k+i e+ +G  G+ala  aa  g+   + m e  + +e  ++  ++ +Ga++v  t+g +  k a++ a     ++p+++l
  MMETSP1061-20121228|8735_1  75 PIFHCKnLSSElGGAQIYLKREDLNHTGSHKINHC---LGEALLAKRMNKAKVIAETGAGQHGVALATCAALVGLDCEIHMGEiDIQKEWPNVrrMQVLGANVVpATHGGRSLKEAVDSAFGAYMANPEEML 203
                 6666554333314689*************997655...578999999**********************************99457888665533899****99569999*******999888877777653 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.039
   TIGR01139 238 sdeeaietarrlakeeGilvGissGaavaaalkvakklekdkkivvilpdtger 291
                 +d e i+   +l + eG++  + s  a+a a+k+a  l +  +i+v ++  g++
  MMETSP1061-20121228|8735_1 353 TDKEVIDAFFKLSRAEGVIPALESAHALAYAMKLAPTLPPTTTILVNMSGRGDK 406
                 67788888889**************************99999999887777765 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.0   7.7e-09   2.4e-06      21     108 ..      88     175 ..      71     184 .. 0.84
   2 ?   -3.8   0.0       3.5   1.1e+03     166     201 ..     245     279 ..     239     282 .. 0.76
   3 !    4.8   0.0    0.0084       2.7     225     301 ..     338     414 ..     329     415 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 7.7e-09
   TIGR03945  21 kvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkf...icvvDpkiseanlkllralgaeve 108
                  +++++K E ln +gS K     + l +a+  ++++++++i E   G  ++aLa+++a +Gl+    +  +D +    n++ +++lga+v+
  MMETSP1061-20121228|8735_1  88 GAQIYLKREDLNHTGSHKIN---HCLGEALLAKRMNKAKVIAETGAGQHGVALATCAALVGLDCeihMGEIDIQKEWPNVRRMQVLGANVV 175
                 578***************96...57899**********************************96312345788888889999999999986 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3.5
   TIGR03945 166 evdylfvgvsttGtlaGvarrlrekspevkvvavDa 201
                 ++dyl++ v+ +    G+  ++ e   +v++v+v+ 
  MMETSP1061-20121228|8735_1 245 TPDYLIACVGGGCNSLGLFTAFLED-ENVQLVGVEP 279
                 6899999999988888888887765.4677777765 PP

  == domain 3    score: 4.8 bits;  conditional E-value: 0.0084
   TIGR03945 225 pelldeslidevvkvseletvaacrelleregilaGgSsGtvvaavkkllakieegstvvailpDrGerYldtvYdd 301
                  +++++s   ++ + ++ e + a  +l + eg++    s+ ++a + kl++++++++t+++ ++ rG++ ld v d+
  MMETSP1061-20121228|8735_1 338 HSFFKDSGRVRYETATDKEVIDAFFKLSRAEGVIPALESAHALAYAMKLAPTLPPTTTILVNMSGRGDKDLDYVCDK 414
                 456777777788889999***************************************************99999775 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.1   1.5e-10   4.7e-08      20     116 ..      74     174 ..      63     190 .. 0.83
   2 ?   -2.3   0.0       1.1   3.5e+02     159     178 ..     384     403 ..     357     405 .. 0.61

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.5e-10
   TIGR02991  20 tplvesesls.ellGvpvllklesrqttGsfklrGatnavlslsdaeraaGvvaastGnhGralayaakkegvravicmselvpqnkvdeirr...lGaev 116
                 +p+ + + ls el G ++ lk e  + tGs k+       l  +  ++a+ +  + +G+hG ala  a+  g+ + i m e+  q    ++rr   lGa+v
  MMETSP1061-20121228|8735_1  74 SPIFHCKNLSsELGGAQIYLKREDLNHTGSHKINHCLGEALLAKRMNKAKVIAETGAGQHGVALATCAALVGLDCEIHMGEIDIQKEWPNVRRmqvLGANV 174
                 5777777775267889******************9999888888999999999999*************************99988766666522268887 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.1
   TIGR02991 159 levveqvpdlalvlvplsGG 178
                 +++   +p   ++lv++sG 
  MMETSP1061-20121228|8735_1 384 MKLAPTLPPTTTILVNMSGR 403
                 33444556666666666665 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.3e-08   1.3e-05       9      92 ..      74     155 ..      67     189 .. 0.81
   2 ?   -2.2   0.0       1.6   4.9e+02     187     199 ..     268     280 ..     245     291 .. 0.70
   3 ?    2.9   0.0     0.044        14     234     285 ..     356     408 ..     340     411 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 4.3e-08
   TIGR01138   9 tplvrlkrllpe.edsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdn 92 
                 +p+ + k+l++e  ++++++k e  n +Gs k    l    ea++   +++ +v+ e+ +G  G+ala  aal G+  ++ m + 
  MMETSP1061-20121228|8735_1  74 SPIFHCKNLSSElGGAQIYLKREDLNHTGSHKINHCLG---EALLAKRMNKAKVIAETGAGQHGVALATCAALVGLDCEIHMGEI 155
                 6899999999997889****************999886...66677778999***************************999763 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.6
   TIGR01138 187 qnpavqivGlqpa 199
                 ++++vq+vG++pa
  MMETSP1061-20121228|8735_1 268 EDENVQLVGVEPA 280
                 4679******997 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.044
   TIGR01138 234 daediarelakkegifvGvssGgavaaalrlarelek.avvvaiicdrGdryl 285
                 +  d   +l++ eg+     s  a+a a++la  l+  + ++  ++ rGd+ l
  MMETSP1061-20121228|8735_1 356 EVIDAFFKLSRAEGVIPALESAHALAYAMKLAPTLPPtTTILVNMSGRGDKDL 408
                 556677899*************************9874556666889999976 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.9e-07   9.3e-05      18     128 ..      74     191 ..      63     281 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.9e-07
   TIGR01124  18 tplekaaklserlk.nrvllkredlqpvfsfklrGaynkmaqlsaeqkakGviaasaGnhaqGvalsakklGvkavivmpettpeik...vdavkafGgevv..lh.Genydeakaka 128
                 +p+ + ++ls+ l+  +++lkredl+   s k+           + +kak +  + aG h   +a +a+ +G+   i m e   +     v  ++  G++vv   h G + +ea + a
  MMETSP1061-20121228|8735_1  74 SPIFHCKNLSSELGgAQIYLKREDLNHTGSHKINHCLGEALLAKRMNKAKVIAETGAGQHGVALATCAALVGLDCEIHMGEIDIQKEwpnVRRMQVLGANVVpaTHgGRSLKEAVDSA 191
                 57788899999986379*****************99988655556677777777899***99999999***********987666541115555567888873323256667776655 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     9e-06    0.0028      21     102 ..      72     150 ..      57     160 .. 0.91
   2 ?    3.2   0.0     0.029         9     263     311 ..     313     387 ..     221     409 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9e-06
   TIGR00260  21 gstelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgnetvlcAtsGdtgaaaaealagkanvkvvv 102
                 +  + f++++l++e+g+ ++y+k + ++ t++ K      ++ +l + + +++++++    G  g a+a   a+  ++++ +
  MMETSP1061-20121228|8735_1  72 RPSPIFHCKNLSSELGGAQIYLKREDLNHTGSHKINH--CLGEALLAKRMNKAKVIAETGAGQHGVALA-TCAALVGLDCEI 150
                 55789*****************************766..8*****************************.9****9999976 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.029
   TIGR00260 263 rrslgnledlke..........................svsdeeileaikklaeeegyllephtavavaalkklv 311
                 +++ g+  ++++                          +++d+e+++a  kl + eg++    +a a+a   kl+
  MMETSP1061-20121228|8735_1 313 NEETGEPSAVHScasgldypgvgpqhsffkdsgrvryeTATDKEVIDAFFKLSRAEGVIPALESAHALAYAMKLA 387
                 55555555554455666666666666666666666666899*****************99999999998877775 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.7e-05    0.0054      12     112 ..      74     175 ..      67     184 .. 0.83
   2 ?    1.9   0.0     0.047        15     173     215 ..     248     289 ..     238     297 .. 0.78
   3 ?   -2.2   0.0      0.81   2.6e+02     249     285 ..     352     388 ..     343     410 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-05
   TIGR01137  12 tPlvrlnkvskgl.kaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdtliePtsGntGiGlalvaaikGykciivlPe.kvseekvdv..lkalGaeiv 112
                  P+   +++s++l  a+++ k e +n  Gs k  i +  + +a    r+++++ + e  +G  G+ la  aa  G  c i + e  + +e  +v  ++ lGa++v
  MMETSP1061-20121228|8735_1  74 SPIFHCKNLSSELgGAQIYLKREDLNHTGSHK--INH-CLGEALLAKRMNKAKVIAETGAGQHGVALATCAALVGLDCEIHMGEiDIQKEWPNVrrMQVLGANVV 175
                 68888999999652589*************98..554.567888999*********************************9999457777666633668999988 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.047
   TIGR01137 173 alvagvGtGGtitGiarklkekedkvrivGadPeGsilaepee 215
                  l+a vG G    G    +  ++++v++vG++P G  l e+e 
  MMETSP1061-20121228|8735_1 248 YLIACVGGGCNSLGLFTAFL-EDENVQLVGVEPAGRGLEEGEG 289
                 67888888877777766554.5789**********99998875 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.81
   TIGR01137 249 tddkesfkmarrlikeegllvgGssGsavvaalkvae 285
                 + dke  +   +l + eg++ +  s  a++ a+k a 
  MMETSP1061-20121228|8735_1 352 ATDKEVIDAFFKLSRAEGVIPALESAHALAYAMKLAP 388
                 4677777777888888888888888888888888877 PP

>> TIGR01275  ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.8e-06    0.0012       2      87 ..      68     151 ..      67     177 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.8e-06
   TIGR01275   2 elillptPiqylkrlsekl.GaeiyikrDDltglelsGnkirkL..efLlaealkkgadtvitvGaiqsnharatalvakklgLkavll 87 
                 +++  p Pi + k+ls++l Ga+iy+kr+Dl     +  ki     e Lla  ++ +a+++   Ga q  h  a a+ a+ +gL++ + 
  MMETSP1061-20121228|8735_1  68 DFVGRPSPIFHCKNLSSELgGAQIYLKREDLNHT--GSHKINHClgEALLAKRMN-KAKVIAETGAGQ--HGVALATCAALVGLDCEIH 151
                 68899*******99999873699*******9864..5556654323666666655.588888899865..8888888899999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 1984.39
//
Query:       MMETSP1061-20121228|8733_1  [L=779]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (779 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.45
# Mc/sec: 2284.88
//
Query:       MMETSP1061-20121228|8738_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 743.31
//
Query:       MMETSP1061-20121228|8739_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1259.90
//
Query:       MMETSP1061-20121228|8743_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   17.0   4.1     0.0015   16.7   1.5    2.2  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.19   7.9e+02       8      29 .]       2      24 ..       1      24 [. 0.57
   2 !   16.7   1.5   3.7e-07    0.0015       1      28 [.      51      76 ..      51      79 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.19
   TIGR01409  8 kaaaaagaaaglgl..llpsparA 29
                k++a+++++ +  l  +++sp++A
  MMETSP1061-20121228|8743_1  2 KFSATVTLMIVQ-LfsAVTSPSDA 24
                666666666554.23566777766 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 3.7e-07
   TIGR01409  1 lsRRdFLkaaaaagaaaglglllpspar 28
                ++RR+FL aa++ag++++    + sp +
  MMETSP1061-20121228|8743_1 51 TNRRSFLSAATMAGVSLASL--VASPQS 76
                69****************96..444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1837.29
//
Query:       MMETSP1061-20121228|8741_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2395.36
//
Query:       MMETSP1061-20121228|8740_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 855.06
//
Query:       MMETSP1061-20121228|8746_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.099   10.1   3.9       0.11   10.0   2.7    1.0  1  TIGR01385 TFSII: transcription elongation factor S-II
        5.3    3.2   8.9          6    3.0   6.2    1.0  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   2.7   5.3e-05      0.11      82     142 ..       6      67 ..       1      70 [. 0.77

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 5.3e-05
   TIGR01385  82 enpagakeeklqr.kesvksakaekkeqavkieqkKdsssssrnakaklvalavtndkvRdk 142
                 +n ++   e++ r  e   ++++++k+q +k++q+K+++  +   +++  + +v ++++R+ 
  MMETSP1061-20121228|8746_1   6 NNGTPMGRETTARnDEGLTQQQQQHKQQQHKQQQHKQQQRLQGLIQQHSSPYHVNSNNIRND 67 
                 444455555555515677888888999999****9**999999*****************86 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   6.2    0.0029         6      68     129 ..       2      70 ..       1      71 [. 0.59

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0029
   TIGR03490  68 seekdeeepkskkpekkpdpsknkeeiekpkkepkkpd.kkpqadepnnd........hadqknnnkvdfs 129
                 ++++++  p   ++  ++d +  ++++++++++ k+   k++q  +            h + +n++++ fs
  MMETSP1061-20121228|8746_1   2 NNNNNNGTPMGRETTARNDEGLTQQQQQHKQQQHKQQQhKQQQRLQG--LiqqhsspyHVNSNNIRNDYFS 70 
                 44555566666666666666666666666666665555333333332..1233467999999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       607  (0.147977); expected 82.0 (0.02)
Passed bias filter:                      391  (0.0953194); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 340.62
//
Query:       MMETSP1061-20121228|8744_1  [L=906]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.37
# Mc/sec: 3231.95
//
Query:       MMETSP1061-20121228|8747_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 347.34
//
Query:       MMETSP1061-20121228|8750_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-14   48.9   1.0    1.3e-13   48.5   0.7    1.1  1  TIGR02651 RNase_Z: ribonuclease Z
    0.00057   16.8   0.1    0.00084   16.3   0.1    1.2  1  TIGR02649 true_RNase_BN: ribonuclease BN
     0.0056   13.7   0.0     0.0079   13.2   0.0    1.1  1  TIGR02650 RNase_Z_T_toga: ribonuclease Z, Thermotoga type


Domain annotation for each model (and alignments):
>> TIGR02651  RNase_Z: ribonuclease Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.7   9.4e-17   1.3e-13     225     292 ..     175     241 ..     159     250 .. 0.85

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 9.4e-17
   TIGR02651 225 lLiheatfaeeekkkAkekgHstakeAaeiakeanvkkliLtHiSaryedeeeeelleeakkifentv 292
                 +Liheat+ ++e+++A+ k+Hst +eA e+a + + ++++L H+S+ry++ + ++l  +++k + +t+
  MMETSP1061-20121228|8750_1 175 FLIHEATYRNTESSMAATKKHSTLAEAREVAVDTGCSRVLLSHFSQRYDT-AVSKLSGNKNKNKTKTI 241
                 59***********************************************9.54577766666666654 PP

>> TIGR02649  true_RNase_BN: ribonuclease BN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   6.1e-07   0.00084     227     276 ..     175     224 ..     154     234 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.1e-07
   TIGR02649 227 vmvheatldismeekanarghsstrqaatlareaavgkliithvssrydd 276
                  ++heat   +  + a ++ hs+  +a  +a +++  +++++h s ryd 
  MMETSP1061-20121228|8750_1 175 FLIHEATYRNTESSMAATKKHSTLAEAREVAVDTGCSRVLLSHFSQRYDT 224
                 479*********************************************96 PP

>> TIGR02650  RNase_Z_T_toga: ribonuclease Z, Thermotoga type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   5.7e-06    0.0079     203     252 ..     175     226 ..     162     240 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.7e-06
   TIGR02650 203 llihectfldard..rryknhaaidevmesvkkagvkkvilyhistryirsl 252
                 +lihe+t+ ++       k+h+++ e  e    +g  +v+l h s ry   +
  MMETSP1061-20121228|8750_1 175 FLIHEATYRNTESsmAATKKHSTLAEAREVAVDTGCSRVLLSHFSQRYDTAV 226
                 69******9876511578******************************7665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 1466.55
//
Query:       MMETSP1061-20121228|8749_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-224  744.6   3.2   1.8e-224  743.7   2.2    1.4  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   2.6e-128  426.9   2.6   1.4e-127  424.4   1.8    1.8  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   8.3e-118  392.2   1.4     1e-117  391.9   1.0    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
   1.9e-107  357.8   2.2   2.4e-107  357.5   1.5    1.1  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    1.2e-93  312.3   5.1    4.3e-93  310.5   3.6    1.7  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    1.3e-93  312.3   2.0    1.7e-92  308.6   1.4    1.9  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    2.5e-90  301.3   3.1    1.2e-89  299.1   2.1    1.7  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    1.1e-77  259.6   1.1    1.4e-77  259.1   0.7    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    1.4e-67  226.3   1.1      2e-67  225.8   0.7    1.2  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    2.5e-17   60.4   8.7      5e-12   42.9   0.6    2.4  3  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  743.7   2.2  4.4e-227  1.8e-224       2     523 .]      10     547 ..       9     547 .. 0.95

  Alignments for each domain:
  == domain 1    score: 743.7 bits;  conditional E-value: 4.4e-227
   TIGR02345   2 ptivllkegtdtsqGkgqlisninacvaiaeilkttlGPrGmdklivskekavvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk...liGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhak........kge...........kwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetikakks 523
                 p i++l+egtdtsqG  ql+sninac+a+a++++ttlGPrGmdkl+    k+++sndGati+klldi hPaa +lvdi+ sqd  vGdGttsvv+la+e+l ++k+l+eeg++p  +i++lr+  ++a++k+ e+av  d     + e+l k+a tal+skli+++++ f+ mvv av++l++    ++    i +k++ GG +++s+lv+GvafkktfsyaGfeq  kk++nPkilllnvelelk+ek+nae+r+++ +dy++ivdaew++i++kl+ +v++Gan+vlskl+iGdlatqyfadr +fcaGrv d d+krv+kat +si+++++ l+++vlG+c+lfee+++G er+nlft ++++ +ct++lrGg+eqf++e+ers+hda+m+v+r++ + ++vaGGGa+e+ +++ lr+++ +i+gk+qli+ a+akaleviPr+l+enaG+d++++l+ lr+kh          + +           +w+Gv+ie++ i+++++  vweP+  k+n ++aateaa++ils+deti  ++s
  MMETSP1061-20121228|8749_1  10 PGIIILREGTDTSQGLPQLVSNINACQAVADAVRTTLGPRGMDKLVSAGPKSTISNDGATIMKLLDIAHPAALTLVDISMSQDTTVGDGTTSVVLLAAEILTKLKNLVEEGISPTRMIQTLRKTGRFAVDKVLELAVATD-----REEMLLKCAGTALNSKLISSHRDLFAPMVVSAVTKLHEAGNVDEimeWISIKQIPGGDVRQSFLVEGVAFKKTFSYAGFEQMTKKYENPKILLLNVELELKSEKENAEVRISSLKDYQSIVDAEWQVIYDKLDACVNCGANIVLSKLPIGDLATQYFADRGMFCAGRVADGDMKRVAKATNGSIQTTTNGLSESVLGTCGLFEETRVGDERFNLFTLCPSSLTCTIVLRGGTEQFIAESERSVHDALMVVKRTITSGSVVAGGGAVEMCVANALRKRALEIEGKEQLIVAAYAKALEVIPRQLCENAGLDATDVLAALRRKHFVeeeneeegD-GkgkgkgkkgtaCWYGVNIEEDGITNTFDLGVWEPSDNKMNSFQAATEAACVILSIDETILSPRS 547
                 789************************************************************************************************************************************99887.....569*********************************9643333233489*********************************************************************************************************************************************************************************************************************************************************************************54334444441.0444556667789***********************************************98875 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.4   1.8  3.4e-130  1.4e-127       2     518 ..      12     542 ..      11     545 .. 0.93

  Alignments for each domain:
  == domain 1    score: 424.4 bits;  conditional E-value: 3.4e-130
   TIGR02339   2 vlilkegtqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvh...egmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakh........ekegn........k....nagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvi 518
                 ++il+egt+ ++g   l sni+a +ava+av++tlGPrG+Dk Lv +    ti nDGati+k +di hPaa  lv+++ +qd+ vgDGtt++v+la e+l+k ++L+e++i Pt +++  rk  + a++ + e+a   d e  e+l k a t+l+sk + ++++d+ a +vv+av+++ e    g+++  +++i+i++  Gg+++++ lveG+   k       e+m k+ en+ki+ll+++le++  + +a+++i+s +  ++ +d+e +++ ++ d+ ++ Gan+v+++  i dla +y+a++G++   rv   D++++a+at ++i ++ + ++es LG+ +l ee +vg+++    + +  + + ti+lrGgte+ + e eR+++Dal vvk ++++g+vvaGgGave+ +a+ lr+ a +ieG+eql v a+a+ale ipr l enaGld+ d+l  lR+kh        e  g+        k    ++gv++ +  i+++++lgv+ep   k++  ++ateaa +il iD+ i
  MMETSP1061-20121228|8749_1  12 IIILREGTDTSQGLPQLVSNINACQAVADAVRTTLGPRGMDK-LVSAGPKSTISNDGATIMKLLDIAHPAALTLVDISMSQDTTVGDGTTSVVLLAAEILTKLKNLVEEGISPTRMIQTLRKTGRFAVDKVLELAVATDRE--EMLLKCAGTALNSKLI-SSHRDLFAPMVVSAVTKLHEA---GNVDEIMEWISIKQIPGGDVRQSFLVEGVAFKKTFSYagfEQMTKKYENPKILLLNVELELKSEKENAEVRISSLKDYQSIVDAEWQVIYDKLDACVNCGANIVLSKLPIGDLATQYFADRGMFCAGRVADGDMKRVAKATNGSIQTTTNGLSESVLGTCGLFEETRVGDERFNLFTLCPSSLTCTIVLRGGTEQFIAESERSVHDALMVVKRTITSGSVVAGGGAVEMCVANALRKRALEIEGKEQLIVAAYAKALEVIPRQLCENAGLDATDVLAALRRKHfveeeneeE--GDgkgkgkgkKgtacWYGVNIEEDGITNTFDLGVWEPSDNKMNSFQAATEAACVILSIDETI 542
                 79****************************************.6788889*********************************************************************************9999877766..79**************.69*************777665...4566779**************************976522378************************************************************************************************************************************************************************************************************************************************9665433210..11112222221222379******************************************988 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  391.9   1.0  2.4e-120    1e-117       9     530 ..      23     545 ..      15     551 .. 0.93

  Alignments for each domain:
  == domain 1    score: 391.9 bits;  conditional E-value: 2.4e-120
   TIGR02340   9 sGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctva...sqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlke...........ekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklk 530
                 +G      n+ a++ava++v+t+lGP G+dk+ v      ti ndGati+k+l+++hPaa  lv+++  qd  vGdGttsvv+laae+l + ++lv++ + Pt +i+ +r + + av   ++ l+  v +  +e l+ +a t+l sk+is++ dlf+ +vv av+ ++   +       ++ + i + +G+ +r+s+lv+G a++ t +    +qm k+ +++ki+ll+++l+ +  k   ++ ++  ++ ++i + e +++ ++++  +++Gan+vl    i dla++y+ + g+++  rv   d+kr+akat +++ ++       + l+ s+lG++  ++e r++d+   l+    ++ +++i+lrG  ++++ e ers+hdal+vvkrt+ s++vvaGgGave++++  l + a  ++ +eql +a++a+al +iP++l+ na+ d+t+++a lr  h  +  +e           +k +  ++G++++++ i++++++Gv eP+ +k+ s+++ateaa  il id+ i   
  MMETSP1061-20121228|8749_1  23 QGLPQLVSNINACQAVADAVRTTLGPRGMDKL-VSAGPKSTISNDGATIMKLLDIAHPAALTLVDISMSQDTTVGDGTTSVVLLAAEILTKLKNLVEEGISPTRMIQTLRKTGRFAV---DKVLELAVATDREEMLLKCAGTALNSKLISSHRDLFAPMVVSAVTKLHEAGNV---DEIMEWISIKQIPGGDVRQSFLVEGVAFKKTFSyagFEQMTKKYENPKILLLNVELELKSEKENAEVRISSLKDYQSIVDAEWQVIYDKLDACVNCGANIVLSKLPIGDLATQYFADRGMFCAGRVADGDMKRVAKATNGSIQTTT------NGLSESVLGTCGLFEETRVGDERFNLFTLCPSSLTCTIVLRGGTEQFIAESERSVHDALMVVKRTITSGSVVAGGGAVEMCVANALRKRALEIEGKEQLIVAAYAKALEVIPRQLCENAGLDATDVLAALRRKHFVEEENEeegdgkgkgkgKKGTACWYGVNIEEDGITNTFDLGVWEPSDNKMNSFQAATEAACVILSIDETILSP 545
                 55555678***********************6.5666789*******************************************************************9998888887...56677777777899****************************99988766655...555688999999****************99865112589******************9999999*****************************************************************************99885......457789*******************************************************************************************************************************9888777778999999887777889*********************************************99654 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  357.5   1.5  5.8e-110  2.4e-107       2     520 ..      12     542 ..      11     548 .. 0.96

  Alignments for each domain:
  == domain 1    score: 357.5 bits;  conditional E-value: 5.8e-110
   TIGR02344   2 vlvlnqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthp...kmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqe..................ekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddiv 520
                 +++l++ t+ ++G    +sni+a++avad +rttlGp+ m k++  +     ++ndG +i++ +d+ahpaa +l+++s +qd  vGdGttsv++la e+l++ ++++e+ i pt ++++++k+   a++++ el++    + e++llk   +++ +k++s + dl + + ++av+ ++    n      +i  ++ +++ipGG++++s +++Gv + k    +   +m +k enp+i+ll++ le k  + +++v i++ +d++++++ e + +    +  ++  +++v+++  + dla  y++ +++    rv   d +r+a+++  +i + ++ l es +Gt +Glfe  ++Gde f ++t c    +cti+lrG++ + + e er ++dal v++  + ++++v+GGGa+e+ v+++l+k+a ++eg eql++ a a+alevipr l +n+G ++   l++lr kh  e                  +++++G++ e+  i++  + g+wep   k++++++a e+a+++l id+ +
  MMETSP1061-20121228|8749_1  12 IIILREGTDTSQGLPQLVSNINACQAVADAVRTTLGPRGMDKLVS-AGPKSTISNDGATIMKLLDIAHPAALTLVDISMSQDTTVGDGTTSVVLLAAEILTKLKNLVEEGISPTRMIQTLRKTGRFAVDKVLELAVAT--DREEMLLKCAGTALNSKLISSHRDLFAPMVVSAVTKLHEAG-NVD----EIMEWISIKQIPGGDVRQSFLVEGVAFKKTFSYAgfeQMTKKYENPKILLLNVELELKSEKENAEVRISSLKDYQSIVDAEWQVIYDKLDACVNCGANIVLSKLPIGDLATQYFADRGMFCAGRVADGDMKRVAKATNGSIQTTTNGLSESVLGT-CGLFEETRVGDERFNLFTLCPSSLTCTIVLRGGTEQFIAESERSVHDALMVVKRTITSGSVVAGGGAVEMCVANALRKRALEIEGKEQLIVAAYAKALEVIPRQLCENAGLDATDVLAALRRKHFVEeeneeegdgkgkgkgkkgTACWYGVNIEEDGITNTFDLGVWEPSDNKMNSFQAATEAACVILSIDETI 542
                 78999999********************************99764.44556789*************************************************************************99999888765..567899****************************9887766.444....599**************************998765569*****************************************************************************************************************9998.****************************************************************************************************************************77778999**********999899********************************************865 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  310.5   3.6   1.1e-95   4.3e-93      17     513 ..      29     543 ..      13     548 .. 0.89

  Alignments for each domain:
  == domain 1    score: 310.5 bits;  conditional E-value: 1.1e-95
   TIGR02341  17 lssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrlkgstnleai....qiikklggklddsyldegfllekki...gvn.qpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraaha.........egnst..........agldleegeiadlrklgivesyklkravvssaaeaaevllrvdniik 513
                 +s +    av d v++tlgp+gmdk++ sa+++   +++ndgati+k + +  paa  lvdis+ qd  vgdgttsv++laae+l + ++lv++ i p  +i+  r++ + a + + + av    +     e llk a t+l+sk++s ++d fa + v av +l+ ++n+++i     i ++ gg++ +s+l eg  ++k++   g     k+ en kil+ n  l+    k   + vr+ s      +  ae + + +k++   + + n+ + +  i +   q fad g+ +        ++r+a  t g i +t +  +   lg c l ee  +g++++  f+ +    +ctivlrg t+q + e+ers+hdal v+ +t+    +v+ggg+ e+ +a+a+ + a +++gk+ l v a+akal+ +p  l++nag+d+++++a lr +h          +g+ +           g+++ee  i++   lg+ e  + k     +a+eaa v+l +d+ i 
  MMETSP1061-20121228|8749_1  29 VSNINACQAVADAVRTTLGPRGMDKLV-SAGPK--STISNDGATIMKLLDIAHPAALTLVDISMSQDTTVGDGTTSVVLLAAEILTKLKNLVEEGISPTRMIQTLRKTGRFAVDKVLELAVATDRE-----EMLLKCAGTALNSKLISSHRDLFAPMVVSAVTKLHEAGNVDEImewiSIKQIPGGDVRQSFLVEGVAFKKTFsyaGFEqMTKKYENPKILLLNVELELKSEK-ENAEVRISSLKDYQSIVDAEWQVIYDKLDACVNCGANIVLSKLPIGDLATQYFADRGMFCAGRVADGDMKRVAKATNGSIQTTTNGLSESVLGTCGLFEETRVGDERFNLFTLCPSSLTCTIVLRGGTEQFIAESERSVHDALMVVKRTITSGSVVAGGGAVEMCVANALRKRALEIEGKEQLIVAAYAKALEVIPRQLCENAGLDATDVLAALRRKHFveeeneeegDGKGKgkgkkgtacwYGVNIEEDGITNTFDLGVWEPSDNKMNSFQAATEAACVILSIDETIL 543
                 333444569****************76.55553..5679*********************************************************************************998777.....6799***********************************99863222566778*****************98333444157999************987666.689*******************************************************99888777789**************************************************************************************************************************************************9884333333322222111112222223589****************************************9874 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.6   1.4   4.2e-95   1.7e-92      13     529 ..      13     542 ..       6     545 .. 0.91

  Alignments for each domain:
  == domain 1    score: 308.6 bits;  conditional E-value: 4.2e-95
   TIGR02343  13 iikdqdkkkrlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshp...qmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakql.keknpa.................lGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvi 529
                 ii  ++     +Gl    sni a++ava  +rt+lGp+G+dk++ s   + t++ndGati++ +d+ ++ a  lv++s sqd  +GdGtt+vv+la+ +l + ++l+++Gi p ++ +   k+ + av+k+ e+a    v +d +e+llk+a t+l sk++s++++ +a ++v av ++ +    d  ++ i +++  Gg++ ++ l++G+  +k +s+    qm+k+ ++ ki +l   +e    k   ++ iss ++y+++ + e +   + +d + ++Gan+v+ +    d a + + ++++     v+  +++ +a at+G+i +  + lse+ lG+++l +e+++G +  r+ +   + +s + ti++rGg +  i e++rs+hdal vv+  i++ ++v GGGa e++++ a+ + a +++g eq  + a+a+ale ip  l+en+Gld  ++l++++ k   +e+n +                 +Gv+ +e+G ++  +l v e+   k + ++ at+   +il id+ i
  MMETSP1061-20121228|8749_1  13 IILREGT-DTSQGLPQLVSNINACQAVADAVRTTLGPRGMDKLV-SAGPKSTISNDGATIMKLLDIAHPAALTLVDISMSQDTTVGDGTTSVVLLAAEILTKLKNLVEEGISPTRMIQTLRKTGRFAVDKVLELA----VATDREEMLLKCAGTALNSKLISSHRDLFAPMVVSAVTKLHEAGNVDEIMEWISIKQIPGGDVRQSFLVEGVAFKKTFSYAgfeQMTKKYENPKILLLNVELELKSEKENAEVRISSLKDYQSIVDAEWQVIYDKLDACVNCGANIVLSKLPIGDLATQYFADRGMFCAGRVADGDMKRVAKATNGSIQTTTNGLSESVLGTCGLFEETRVGDE--RFNLFTLCPSSLTCTIVLRGGTEQFIAESERSVHDALMVVKRTITSGSVVAGGGAVEMCVANALRKRALEIEGKEQLIVAAYAKALEVIPRQLCENAGLDATDVLAALRRKHFvEEENEEegdgkgkgkgkkgtacwYGVNIEEDGITNTFDLGVWEPSDNKMNSFQAATEAACVILSIDETI 542
                 4433333.34689999**************************75.667788******************************************************************************998766....556789*************************************************************************74444**********************************************************************************999999999************************************975..5556667999**************************************************************************************************98764233332111122222222222333899999999999999999999999***********99****99977 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  299.1   2.1   2.8e-92   1.2e-89      12     515 ..      29     543 ..      21     545 .. 0.89

  Alignments for each domain:
  == domain 1    score: 299.1 bits;  conditional E-value: 2.8e-92
   TIGR02342  12 tsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdlsdrealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasks..aggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrh.......a........qGekt....aGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivl 515
                  sni a +avada+rt+lGp+Gmdkl++ +  + +i+ndGati+k l+++hpaa  lv++s +qd   GdGttsvv+la  +l   ++l+e gi pt + ++++++   a++ + el+   d   +e+l+k+a t+l+sk++s + +l+ap+ v av k++++ +  ++ ++ i + +  Gg + ++ l+eGv +++++s +  +  +++ e+ ki l++  l     + +++v +s  ++   ++  e + i +  ++  ++gan++l +       + dla  ++a +++++   +   +++ ++k+      +  + l++  lG+  l ee +++d +    t +  ++ t ++++rG  +  i e+ers+hdal v++  +   +++aGGGa e+ +a +l+k+a e++G e++iv a+a+alevip  l enaGl++ +v++ lr +h       +        +G+k     +G+++++ git++ +  v  p   +  + + a+e+  +il id+ +l
  MMETSP1061-20121228|8749_1  29 VSNINACQAVADAVRTTLGPRGMDKLVSAGP-KSTISNDGATIMKLLDIAHPAALTLVDISMSQDTTVGDGTTSVVLLAAEILTKLKNLVEEGISPTRMIQTLRKTGRFAVDKVLELAVATD--REEMLLKCAGTALNSKLISSHRDLFAPMVVSAVTKLHEAGNVDEI-MEWISIKQIPGGDVRQSFLVEGVAFKKTFSYAgfEQMTKKYENPKILLLNVELELKSEKENAEVRISSLKDYQSIVDAEWQVIYDKLDACVNCGANIVLSKL-----PIGDLATQYFADRGMFCAGRVADGDMKRVAKATNGSIQTTTNGLSESVLGTCGLFEETRVGDERFNLFT-LCPSSLTCTIVLRGGTEQFIAESERSVHDALMVVKRTITSGSVVAGGGAVEMCVANALRKRALEIEGKEQLIVAAYAKALEVIPRQLCENAGLDATDVLAALRRKHfveeeneEegdgkgkgKGKKGtacwYGVNIEEDGITNTFDLGVWEPSDNKMNSFQAATEAACVILSIDETIL 543
                 59*************************8765.679***************************************************************************998888876655..6789**********************************7444433.6778888888****************9998642145567899*******99998766666667889999999999**********************99654.....579****************************9999999999*******************999976655.5566899*************************************************************************************************99555444312222221122221333489*****************************************9876 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  259.1   0.7   3.5e-80   1.4e-77       5     525 ..      14     550 ..      11     555 .. 0.92

  Alignments for each domain:
  == domain 1    score: 259.1 bits;  conditional E-value: 3.5e-80
   TIGR02346   5 llkeGyrhlsgleeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkrea.....egsvkrvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaah..................kkg.nkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiimakpaGGP 525
                 +l+eG+ + +gl  +++ ni+a++ +++ +rt+lGP+gm+klv     k  ++nD ati++ l++ hPaa  lv++s  q++ +GDgt  v+ la+e+L+k ++l++ G+sp+ +i+   ++ ++a++ + el v +      +e l+k   ++l sk +++  d++a +v  a+ ++    + +  ++ i + ++ Gg++++s +++G+ +k+       e   k+ ++ k+  ++  l+ ++      v + + ++      +e + i +++++  + g++++++   ++dla  y    +++     +  +++r++k+ + + ++  +  s   lG++   + + +g+++  ++    + s + tivLrG t++++ + er+++D + vvk  +  + +++G+ga+e+ +a++l+k a + +g eq+ +  +a+a e+iPr l+enaGl+a++vl++L  +h                  kkg    +g++ie++  +++++ +  +++    k+ + + ateaa+ +L++D  i++ ++  P
  MMETSP1061-20121228|8749_1  14 ILREGTDTSQGLP-QLVSNINACQAVADAVRTTLGPRGMDKLVSA-GPKSTISNDGATIMKLLDIAHPAALTLVDISMSQDTTVGDGTTSVVLLAAEILTKLKNLVEEGISPTRMIQTLRKTGRFAVDKVLELAVAT----DREEMLLKCAGTALNSKLISShRDLFAPMVVSAVTKLHEAGNVDEIMEWISIKQIPGGDVRQSFLVEGVAFKKTFsyagfEQMTKKYENPKILLLNVELELKSEKENAEVRISSLKDYQSIVDAEWQVIYDKLDACVNCGANIVLSKLPIGDLATQYFADRGMFCAGRVADGDMKRVAKATNGSIQTTTNGLSESVLGTCGLFEETRVGDERFNLFTLCPS-SLTCTIVLRGGTEQFIAESERSVHDALMVVKRTITSGSVVAGGGAVEMCVANALRKRALEIEGKEQLIVAAYAKALEVIPRQLCENAGLDATDVLAALRRKHfveeeneeegdgkgkgkgKKGtACWYGVNIEED--GITNTFDLGVWEPSDNKMNSFQAATEAACVILSIDETILSPRSQDP 550
                 7999*99999996.6789***********************9865.68999***********************************************************************999998887777653....4567899************8769*************99988888889999**********************974222226678899*********************************************************************9999999999999999***************999999999********************99887.899**************************************************************************************************************9988665333023467777766..569***********************************99776655 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.8   0.7   4.8e-70     2e-67       8     524 ..      18     543 ..      11     549 .. 0.89

  Alignments for each domain:
  == domain 1    score: 225.8 bits;  conditional E-value: 4.8e-70
   TIGR02347   8 kaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeeeidlfm..veilemkhklevdtklirGlvldhGarhP...dmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledea..dear...................evvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlr 524
                  +++++    l  n+na+++++d ++t lGP+G  k lvs+  +  +  dG +++k l i hP+a  +  ++ +qd ++GdGtts+v+l+ e+l + ++l+eeg+ P  +++ l  + + a++ + +l + +      e+ll+ a t+l  kl  +  d ++ +vv av  ++++++ +d  m  + i ++      +  l++G+ +   + +    +m +k +n  il lnv le      n+++  ss ++ + +v+ae + + d++   ++     ++ +     +v+ +  i  l+ + +a +g+++  r+   ++ r+  a+ G+ + + + l++ +lG +Gl  et +g+e++   + + +  ++ti+++g +++ ++  + +v+d l  vk +i  ++vvaG ga+e+ ++++l++++ +++Gk++l v a+a+al viP+ l en+G+d+++vl++l+ ++  +  +                      gv++e +  + +   g+w+    k ++ ++at  a+ +l +de + 
  MMETSP1061-20121228|8749_1  18 GTDTSQGLPQLVSNINACQAVADAVRTTLGPRGMDK-LVSAGPKSTISNDGATIMKLLDIAHPAALTLVDISMSQDTTVGDGTTSVVLLAAEILTKLKNLVEEGISPTRMIQTLRKTGRFAVDKVLELAVAT---DREEMLLKCAGTALNSKLISSHRDLFAPMVVSAVTKLHEAGN-VDEIMewISIKQIPGGDVRQSFLVEGVAFKKTFSYAgfeQMTKKYENPKILLLNVELELKSEKENAEVRISSLKDYQSIVDAEWQVIYDKLDACVN-----CGAN-----IVLSKLPIGDLATQYFADRGMFCAGRVADGDMKRVAKATNGSIQTTTNGLSESVLGTCGLFEETRVGDERFNLFTLCPSSLTCTIVLRGGTEQFIAESERSVHDALMVVKRTITSGSVVAGGGAVEMCVANALRKRALEIEGKEQLIVAAYAKALEVIPRQLCENAGLDATDVLAALRRKHfvE--EeneeegdgkgkgkgkkgtaCWYGVNIEEDGITNTFDLGVWEPSDNKMNSFQAATEAACVILSIDETIL 543
                 5566666677999********************766.78999999**************************************************************9999999888888887777775533...34579********************************99988.7765534677777777778889********998764222899*****************99999**************************999887.....4444.....677778899**********************************************************************************************************************************************************************987554221..11223356788888877655567999999988888889***************************9875 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.9   0.6   1.2e-14     5e-12      18     223 ..      35     245 ..      27     252 .. 0.77
   2 !   21.6   0.7   3.5e-08   1.4e-05     381     470 ..     379     470 ..     372     482 .. 0.85
   3 ?   -3.1   0.0         1   4.3e+02     475     518 ..     497     540 ..     490     544 .. 0.85

  Alignments for each domain:
  == domain 1    score: 42.9 bits;  conditional E-value: 1.2e-14
   TIGR02348  18 vdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkeeiaqvatisann......deeiGeliaeamekvgkdGvi.tveeskslet.......elevveGmqfdrGyvspyfvtdaekmevelenplilitdk 223
                  +++adav++tlGP+g + +++    + +i +dG t+ k +++ ++     a  + +++   + + GdGtt  ++la  i+ +    v  G +p ++ + + k+ + +v+++ +l+   + +e + + a  + n+       +    ++  a+ k+ + G +  + e  s+++       +  +veG+ f + +  +      e+m+ + enp+il+ + 
  MMETSP1061-20121228|8749_1  35 CQAVADAVRTTLGPRGMDKLVSAGP-KSTISNDGATIMKLLDIAHPA----ALTLVDISMSQDTTVGDGTTSVVLLAAEILTKLKNLVEEGISPTRMIQTLRKTGRFAVDKVLELAVATDREEMLLKCAGTALNSklisshRDLFAPMVVSAVTKLHEAGNVdEIMEWISIKQipggdvrQSFLVEGVAFKKTFSYAG----FEQMTKKYENPKILLLNV 245
                 5789**************9998765.789**********99988774....444557778888899****************9999999*****************************99999999888655443111110344577999999999998854245555444431112111344799999999987554....589999999999999875 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 3.5e-08
   TIGR02348 381 aatetelkekkarvedalnatraaveeG.ivaGGGvallraaekleelkekse.dekvGveivkraleaPlrqiaenaGkdgavvvekvkek 470
                   te  + e    v dal   + ++  G +vaGGG+  + +a++l +   + e  e++ v    +ale   rq++enaG d++ v++++++k
  MMETSP1061-20121228|8749_1 379 GGTEQFIAESERSVHDALMVVKRTITSGsVVAGGGAVEMCVANALRKRALEIEgKEQLIVAAYAKALEVIPRQLCENAGLDATDVLAALRRK 470
                 4688889999999************9996789999999*******9966555548888899999*******************999999876 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1
   TIGR02348 475 vGfnaatdeyedlveaGiidpakvtrsalqnaasiaglllttea 518
                 +G n ++d  ++ ++ G+ +p+     ++q a+  a ++l  + 
  MMETSP1061-20121228|8749_1 497 YGVNIEEDGITNTFDLGVWEPSDNKMNSFQAATEAACVILSIDE 540
                 6889999999999**********999999999999999998665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.56u 0.14s 00:00:00.70 Elapsed: 00:00:00.52
# Mc/sec: 1525.49
//
Query:       MMETSP1061-20121228|8753_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 3016.89
//
Query:       MMETSP1061-20121228|8752_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 849.32
//
Query:       MMETSP1061-20121228|8751_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-06   25.2   0.2      3e-05   21.9   0.1    2.1  2  TIGR02603 CxxCH_TIGR02603: putative heme-binding domain
    0.00012   19.4   1.1    0.00013   19.2   0.3    1.4  2  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III
    0.00034   18.2   2.5     0.0033   15.0   1.7    2.0  1  TIGR03045 PS_II_C550: cytochrome c-550
  ------ inclusion threshold ------
      0.012   13.6   1.0      0.015   13.2   0.7    1.4  1  TIGR03872 cytochrome_MoxG: cytochrome c(L), periplasmic


Domain annotation for each model (and alignments):
>> TIGR02603  CxxCH_TIGR02603: putative heme-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1     3e-08     3e-05       2      37 ..       7      43 ..       6      58 .. 0.86
   2 ?    1.6   0.0     0.055        56     121     133 ..      93     105 ..      74     106 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3e-08
   TIGR02603  2 daekGkavfakaCvvCHrvggeGv.dvGPdLtgvkat 37
                + +kG ++f+++C  CH+v+  G+ + GP+L g+  +
  MMETSP1061-20121228|8751_1  7 NEKKGAKIFKTKCSQCHTVESGGAhKQGPNLYGFFGK 43
                679******************997368****998644 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.055
   TIGR02603 121 dedladLvayLks 133
                 ++d +dL+ayLk+
  MMETSP1061-20121228|8751_1  93 PADRKDLIAYLKK 105
                 57889******97 PP

>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.3   1.3e-07   0.00013     107     135 ..       8      37 ..       3      53 .. 0.80
   2 ?   -3.3   0.0       0.9   9.2e+02     153     168 ..      86     101 ..      78     106 .. 0.69

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.3e-07
   TIGR00782 107 rnagaaiFrtyCaqChGagaeGakGf.Psl 135
                 +++ga iF+t C+qCh ++++Ga+   P+l
  MMETSP1061-20121228|8751_1   8 EKKGAKIFKTKCSQCHTVESGGAHKQgPNL 37 
                 467999999999999999999987432555 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 0.9
   TIGR00782 153 ikhGirdpkdedtlva 168
                 +  Gi++p d ++l+a
  MMETSP1061-20121228|8751_1  86 VFAGIKKPADRKDLIA 101
                 5567788877777655 PP

>> TIGR03045  PS_II_C550: cytochrome c-550
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   1.7   3.2e-06    0.0033      51      77 ..       8      37 ..       4      92 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.2e-06
   TIGR03045 51 vkkgkrlfnsaCatChv...gGitktnpnv 77
                 kkg ++f+++C++Ch+   gG  k  pn+
  MMETSP1061-20121228|8751_1  8 EKKGAKIFKTKCSQCHTvesGGAHKQGPNL 37
                589*************64558999999987 PP

>> TIGR03872  cytochrome_MoxG: cytochrome c(L), periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.7   1.5e-05     0.015      45      71 ..       9      37 ..       2      85 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.5e-05
   TIGR03872 45 kkgeslfltacsGchGheaeg..klGPgl 71
                kkg ++f t cs ch  e+ g  k GP l
  MMETSP1061-20121228|8751_1  9 KKGAKIFKTKCSQCHTVESGGahKQGPNL 37
                89*************99876644889987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 719.34
//
Query:       MMETSP1061-20121228|8758_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 413.97
//
Query:       MMETSP1061-20121228|8756_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1758.09
//
Query:       MMETSP1061-20121228|8754_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1747.54
//
Query:       MMETSP1061-20121228|8763_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1704.38
//
Query:       MMETSP1061-20121228|8762_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 2663.78
//
Query:       MMETSP1061-20121228|8759_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 2441.80
//
Query:       MMETSP1061-20121228|8764_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-07   26.6   0.3    1.5e-06   25.0   0.0    1.8  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    6.2e-06   22.9   0.0    8.1e-06   22.5   0.0    1.2  1  TIGR02316 propion_prpE: propionate--CoA ligase
      1e-05   21.8   0.0    1.4e-05   21.3   0.0    1.1  1  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.8e-05   21.5   0.0     0.0025   14.4   0.0    2.2  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    0.00055   16.1   0.0     0.0012   15.0   0.0    1.5  1  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
     0.0046   13.0   0.0      0.015   11.3   0.0    1.8  3  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
  ------ inclusion threshold ------
      0.036   10.7   0.1       0.29    7.7   0.0    2.1  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase


Domain annotation for each model (and alignments):
>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.6e-09   1.5e-06      22     104 ..       8     106 ..       2     113 .. 0.74
   2 ?   -3.6   0.0       1.2   7.1e+02     232     258 ..     223     249 ..     213     260 .. 0.58

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 2.6e-09
   TIGR03208  22 rtinddldaavarapdkpalva......lr....vesga.......vrrlsyreldalvdriavglarlgvgrgdvvslqlpnrwefvalylacarigav 104
                 +ti   lda+  r pd++alv+      +r    +es +         r++y ++  +++r+a  l++ g +++d++  +lpn  e  +l +ac rig +
  MMETSP1061-20121228|8764_1   8 KTIAAALDATALRIPDRVALVSaapealMRtitaTES-EgidktlpLDRYTYGDFRDKTNRLAGFLQAYGYEQNDIMMSDLPNVAENLMLQIACNRIGVT 106
                 6888888999889999988876222222111111111.111112223699************************************************75 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.2
   TIGR03208 232 elgegdvilmaspmahqtgfmyglmlp 258
                 ++ e dv+ +a  + h  g++ ++   
  MMETSP1061-20121228|8764_1 223 AMIEDDVVCVAITLCHAFGMGSAVCSS 249
                 444556666666666666655554444 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.4e-08   8.1e-06      82     137 ..      54     109 ..      14     122 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.4e-08
   TIGR02316  82 rtltyrqlhrevnalasalralgvrrgdrvliylpmiaeaalallacarigaihsv 137
                   +ty ++ ++ n+la  l+a g ++ d ++  lp++ae  +  +ac rig  ++ 
  MMETSP1061-20121228|8764_1  54 DRYTYGDFRDKTNRLAGFLQAYGYEQNDIMMSDLPNVAENLMLQIACNRIGVTYAT 109
                 469************************************************98765 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.5e-08   1.4e-05      79     141 ..      45     107 ..      31     115 .. 0.88

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.5e-08
   TIGR02188  79 egdeegedsrkltYaellrevcrlanvlkelGvkkgdrvaiYlpmipeaviamlacaRiGavh 141
                 eg +++    ++tY ++ ++++rla  l+++G ++ d ++  lp + e  +  +ac RiG+++
  MMETSP1061-20121228|8764_1  45 EGIDKTLPLDRYTYGDFRDKTNRLAGFLQAYGYEQNDIMMSDLPNVAENLMLQIACNRIGVTY 107
                 444555567899************************************************987 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0029       1.7      27      57 ..      52      82 ..      10      93 .. 0.84
   2 !   14.4   0.0   4.2e-06    0.0025     197     236 ..     221     260 ..     210     318 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0029
   TIGR02262 27 dvsslsygeleaevrrvaaalrrlGvkreer 57
                +  +++yg+++++++r+a  l++ G ++++ 
  MMETSP1061-20121228|8764_1 52 PLDRYTYGDFRDKTNRLAGFLQAYGYEQNDI 82
                5689**********************99874 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 4.2e-06
   TIGR02262 197 vlglreddvvfsaaklffayGlGnalifplsvGatavlma 236
                  + + eddvv  a  l  a+G+G a+   l  Gat vl +
  MMETSP1061-20121228|8764_1 221 EVAMIEDDVVCVAITLCHAFGMGSAVCSSLQQGATIVLPS 260
                 56788********************************965 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.1e-06    0.0012      47     100 ..      54     107 ..      31     120 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.1e-06
   TIGR02275  47 rkfsyrelderadnlaasltklGikkgdtavvqlpniaefyivffallklGvaP 100
                  +++y ++ +++++la  l++ G ++ d ++  lpn+ae  +   a  ++Gv+ 
  MMETSP1061-20121228|8764_1  54 DRYTYGDFRDKTNRLAGFLQAYGYEQNDIMMSDLPNVAENLMLQIACNRIGVTY 107
                 689*******************************************99999975 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.28   1.6e+02     121     156 ..       4      38 ..       3      52 .. 0.75
   2 !   11.3   0.0   2.5e-05     0.015     113     168 ..      54     109 ..      31     117 .. 0.90
   3 ?   -3.3   0.0      0.64   3.7e+02     323     374 ..     246     303 ..     239     325 .. 0.58

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.28
   TIGR01217 121 rrqvaslaaalralGvkkGdrvagylpnipeavaal 156
                 r  v ++aaal a  ++  drva ++   pea++  
  MMETSP1061-20121228|8764_1   4 RMTVKTIAAALDATALRIPDRVA-LVSAAPEALMRT 38 
                 6789999**************96.566677776543 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 2.5e-05
   TIGR01217 113 akvtfeelrrqvaslaaalralGvkkGdrvagylpnipeavaallatasvGaiwss 168
                  + t+ ++r +  +la  l+a G ++ d + + lpn++e +++ +a+  +G  +++
  MMETSP1061-20121228|8764_1  54 DRYTYGDFRDKTNRLAGFLQAYGYEQNDIMMSDLPNVAENLMLQIACNRIGVTYAT 109
                 678***********************************************988765 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 0.64
   TIGR01217 323 lvsglatGatlvlyd..Gs..plvpa..tnvlfdlaeregitvlGtsakyvsavrkkg 374
                 + s+l  Gat+vl    G    +vp+  +++  ++ e e+ t+l + ++ ++a  +++
  MMETSP1061-20121228|8764_1 246 VCSSLQQGATIVLPSvgGIrgCGVPSqrAEATLQVLESEKCTLLFADTHTLKAFPDED 303
                 6788888888888542132113345411345566666666666666666666655555 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.1        60       8      36 ..       6      34 ..       3      49 .. 0.78
   2 ?    7.7   0.0    0.0005      0.29       1      52 [.      57     108 ..      57     123 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.1
   TIGR01923  8 eaarlAkalkaqsvrkgdvvallaensle 36
                +++ +A al+a ++r  d+val++    +
  MMETSP1061-20121228|8764_1  6 TVKTIAAALDATALRIPDRVALVSAAPEA 34
                6788999999999**99***999875544 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.0005
   TIGR01923   1 tfaeldkeaarlAkalkaqsvrkgdvvallaenslelvllllallllgveia 52 
                 t+ ++  +++rlA  l+a++  ++d++   ++n +e ++l +a+ ++gv+ a
  MMETSP1061-20121228|8764_1  57 TYGDFRDKTNRLAGFLQAYGYEQNDIMMSDLPNVAENLMLQIACNRIGVTYA 108
                 689999******************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1626.29
//
Query:       MMETSP1061-20121228|8765_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.37
# Mc/sec: 2279.49
//
Query:       MMETSP1061-20121228|8767_1  [L=1347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-84  281.4   0.0    8.7e-79  263.2   0.0    2.5  3  TIGR02400 trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
    1.3e-57  193.4   0.0    7.4e-57  190.8   0.0    2.0  2  TIGR02398 gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
    9.5e-22   75.9   0.0    9.9e-15   52.9   0.0    2.6  2  TIGR00685 T6PP: trehalose-phosphatase
    1.6e-12   45.8   0.0    1.2e-11   43.0   0.0    2.1  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB


Domain annotation for each model (and alignments):
>> TIGR02400  trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1      0.48   4.9e+02      38      54 ..     404     423 ..     361     432 .. 0.64
   2 !   15.4   0.0   1.2e-06    0.0012      59      99 ..     454     494 ..     441     505 .. 0.80
   3 !  263.2   0.0   8.5e-82   8.7e-79     102     454 ..     537     911 ..     533     913 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.48
   TIGR02400  38 g...vWvgwsGkeveeeeek 54 
                     +W gw G+ + +++++
  MMETSP1061-20121228|8767_1 404 VgvvKWKGWHGNYSTQQSSS 423
                 14568******999888743 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.2e-06
   TIGR02400  59 elegkitlvpvdLseeevdeyYegfsNsvLWPlfHyrldla 99 
                 e    +++vpv ++   + e Y+gf+  +LWP++H++++  
  MMETSP1061-20121228|8767_1 454 ECLRPFHCVPVWIDPLIFGEMYNGFCKGILWPVLHNVTSVY 494
                 45566789999999999******************997654 PP

  == domain 3    score: 263.2 bits;  conditional E-value: 8.5e-82
   TIGR02400 102 erkefeaYkrvNrlfaekvaellkegdvvwvhDYhllllpamlrelgvenvkiGfFlHiPfpsseilrllPvreellegllaadlvGfqteedaenflsavsrllgletlenkveske...........rtvrveafpigidvdkfaeaakkpevkkeiaelreklkgekvilgvdRLDysKGlperlkafeklLeenpewrgkvvlvqiavpsRedveeYqelreeveelvgringef.geldwvpirylnksvdreeLvalyraadvalvtplrDGmNLVakEyvaaqed.............kkGvLiLSefaGAaeeLkeallvnpkdiegvaeaiaealtmpleereerlrallkklekedvqrWaedflkeL 454
                 e++ ++aY++vNr+f+e v+++++egd+vw+h +hll+lp++l ++++   kiG FlH+Pfpssei+r+l +re+ll+g+l+ad vGf+  e+a++fl++++rllgl+  +   +s++           r+v v+    gi++  +++ ++++ v++e+a +r +  g+++  +++RL+  KG+p +l a e++L++ pew gk+vl+q+  ++ e+ + Y + r+ev  +v+rin+++ g+ ++      +  ++ ++ +al +a+dv+lvtp+rDG+NL+  E+  a+++             ++G ++LSefa  ++ +++al vnp+ i+++a+a+++altm++eer +r++   + +++ + qrWa + + +L
  MMETSP1061-20121228|8767_1 537 EKELWSAYNQVNRKFSEVVVQCFNEGDLVWIHGFHLLILPSYLTRRISM-AKIGIFLHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFEYARHFLTCCRRLLGLNYGMIPDASGNggytlaidtngRHVAVTSIHAGIEPPVLNQILQHDRVAREAAMIRARYPGKTIFCSIERLESLKGIPLKLLAIERFLKRCPEWIGKIVLIQVGITAWERGDDYIKTRNEVTDQVQRINAMWpGTIQFQET--PDWRMRLQQRMALMKASDVCLVTPIRDGLNLIPLEFTIAHQEalipavrqadggrRRGLVVLSEFASCTRVMRGALHVNPWKISEIAQAFQQALTMTEEERLKRVTCASEFVTRVTTQRWALAVMLDL 911
                 5678***************************************999998.5*****************************************************99876554444433569999***99************************************************************************************************************99566666544..45567777889*************************87765423333333334323599*************************************************************98877766 PP

>> TIGR02398  gluc_glyc_Psyn: glucosylglycerol-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.085        87      85     104 ..     474     493 ..     470     528 .. 0.74
   2 !  190.8   0.0   7.2e-60   7.4e-57     110     480 ..     539     911 ..     534     917 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.085
   TIGR02398  85 fyeitskeafwpilhtfper 104
                 +y+ + k  +wp+lh     
  MMETSP1061-20121228|8767_1 474 MYNGFCKGILWPVLHNVTSV 493
                 799999*********86543 PP

  == domain 2    score: 190.8 bits;  conditional E-value: 7.2e-60
   TIGR02398 110 adwevfkkvnkafaeaaaeeaaegatvwvhdynlwlvpgyirqkrpdlkiaffhhtpfpsadvfnilpwreqivesllccdlvGfhipryvenfvaaarslvkvkivskvsvdekfiavGtalaeeevttaldtkdrlvkldaspvGtdperireavaaasveeriekireelagrklilsaervdytkGikellvayerllerreellgkvvlvvaavkaasgmkiyeelqseieelvGrinGrfa.rvdwtpvrlftralpyeelvaffaaadvawitplrdGlnlvakeyvaar........glrdG.....vlvlsefaGaavelkgavltnpyaakrmdeaieaalampkeeqqrrlkelfdaveaydvqdwaeellaev 480
                 + w  +++vn++f+e  ++  +eg +vw+h + l + p y+ ++   +ki  f htpfps+++f  l  re+++  +l  d vGfh+  y + f +  r l++++ +           +  a +++  t a+dt++r v +++   G++p ++++ +++ +v     +ir    g+ +  s+er++  kGi  +l+a er+l+r +e  gk+vl+ + ++a +    y ++++e+ + v rin  +   +++        ++  ++ +a   a+dv+ +tp+rdGlnl+  e+ +a+        +  dG     ++vlsefa ++ +++ga+  np++  ++ +a ++al+m +ee+ +r+   ++ v + + q+wa  ++ ++
  MMETSP1061-20121228|8767_1 539 ELWSAYNQVNRKFSEVVVQCFNEGDLVWIHGFHLLILPSYLTRRISMAKIGIFLHTPFPSSEIFRTLWCREDLLRGMLNADQVGFHLFEYARHFLTCCRRLLGLNYGM----------IPDASGNGGYTLAIDTNGRHVAVTSIHAGIEPPVLNQILQHDRVAREAAMIRARYPGKTIFCSIERLESLKGIPLKLLAIERFLKRCPEWIGKIVLIQVGITAWERGDDYIKTRNEVTDQVQRINAMWPgTIQFQETP--DWRMRLQQRMALMKASDVCLVTPIRDGLNLIPLEFTIAHqealipavRQADGgrrrgLVVLSEFASCTRVMRGALHVNPWKISEIAQAFQQALTMTEEERLKRVTCASEFVTRVTTQRWALAVMLDL 911
                 56****************************************************************************************************998764..........45577899999******************************************************************************************************************9875244444332..3467788999*************************999833333333233444666699************************************************************98776655 PP

>> TIGR00685  T6PP: trehalose-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   9.1e-08   9.3e-05       3      76 ..     958    1044 ..     956    1067 .. 0.72
   2 !   52.9   0.0   9.7e-18   9.9e-15      72     250 .]    1078    1291 ..    1066    1291 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 9.1e-08
   TIGR00685    3 kravlfDlDGTlse............ivkdPdaavvsdellevLqkLaarsdvalaliSGRkllek.lllvklpglvlageHGlelk 76  
                   r++lfD+ GT++             ++    +  + + + e +q+L+++ ++++ ++SG++   + + l+ +p+l+la+eHG+ + 
  MMETSP1061-20121228|8767_1  958 NRLILFDYGGTITSnenldnlsrfrmVKTRIHHSEPTPAMIETIQNLCSDKKNTVFVVSGKERHSLiKTLGHIPNLGLAAEHGMYIS 1044
                  5778888888887422333333333233344566678999**************77*****66665156799***********9875 PP

  == domain 2    score: 52.9 bits;  conditional E-value: 9.7e-18
   TIGR00685   72 Glelkadgktqdvseleek.ipvlkkaavelreelaey.pgvvlErKkvalalHYRqadpelarkrvkellekilsakddfdlkvqdGka....vvElkPrdvnKGei.vkkll..eeadvsgisakdvvvyLGDDlTDedaFrvvr............................kleselGfksVkidsaekktaAkfalagvaeVleflellvk 250 
                  G+ ++   k ++++ l    +  +++ ++ ++e+ a +  g+ +E+ ++ + + YR ad e +  ++ el +++ +    + + + +G +     vE++P++vnKG   +k++   ++   ++ +  d++++LGDD  De +  v+r                            +  ++  + + ++  ++k  aA   l++++eV e l+ lvk
  MMETSP1061-20121228|8767_1 1078 GVKRQHRKKKRHWETLVPIsDRTWRSLTMSIMEVYASRtHGSYIEETEMKVLWQYRDADLEFGYLQARELEDHLSNVLRSYPVDILHGGVeeggYVEVRPKGVNKGVFaMKAICyfHKLRAKPDALVDFALVLGDDHCDEPMLSVMRqighrarggrasdlpktmrlvdvsicdpNVSNDAEVFTCTV--GKKPSAAANYLQDPSEVEELLQALVK 1291
                  6666665566666665555599***************99**********************************************9997633446***********751555541133444444444********************999*******9999999999999888888888888888888..99999999*************99986 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.0   0.0   1.1e-14   1.2e-11       1     219 [.     960    1227 ..     960    1228 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.0 bits;  conditional E-value: 1.1e-14
   TIGR01484    1 llffDlDgTLldpk.................lelseelieaLerlrealgvkvvivTGRslaeikellkqlnl..elpliaengalieaqgeklyaealpedvaevllseekelkeieailkslseryvgtfvedkalevaihysgqkeleqeldskllerlekigir...........................kdleleailsrsn........alqkegetllevlpagvdKg.kalqalleeln......lkkeeilafGDsgNDeemlevaglav 219 
                  l++fD+ gT+++++                  e ++++ie++++l  +++ +v++v+G++  ++ + l       +l l+ae+g  i  ++ k+ +     d++    s   ++++++++   l++  +g  +  ++ ++ + +  +   ++ + s   + +e++++r                           +++ele +ls  +        +   e   ++ev+p+gv+Kg +a++a+   +       +  ++ l++GD+ +De+ml+v++ ++
  MMETSP1061-20121228|8767_1  960 LILFDYGGTITSNEnldnlsrfrmvktrihhSEPTPAMIETIQNLCSDKKNTVFVVSGKERHSLIKTLG---HipNLGLAAEHGMYISWPEFKHGK-----DTDTSDSS---DRRMFSSFGGNLASSPRGVKRQHRKKKRHWETLVP-ISDRTWRSLTMSIMEVYASRthgsyieetemkvlwqyrdadlefgylQARELEDHLSNVLrsypvdilHGGVEEGGYVEVRPKGVNKGvFAMKAICYFHKlrakpdALVDFALVLGDDHCDEPMLSVMRQIG 1227
                  79***************************9999**************************9888777777...335************999988888.....55455555...77777777777775554444443343433333333.256777777777777777777777777777777777755555566665666666665444999*****999****************967888888777788999999*******************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.66u 0.15s 00:00:00.81 Elapsed: 00:00:00.61
# Mc/sec: 2914.58
//
Query:       MMETSP1061-20121228|8773_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.91    7.2   6.4       0.86    7.3   4.4    1.1  1  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.4   0.00021      0.86     125     145 ..       2      22 ..       1      33 [. 0.67

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00021
   TIGR04032 125 vvvvaaVAvatvalaavavnp 145
                 vvv++aVAva+v++++v+++ 
  MMETSP1061-20121228|8773_1   2 VVVAVAVAVAVVVAIVVMITT 22 
                 566667777777776666663 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       472  (0.115066); expected 82.0 (0.02)
Passed bias filter:                      374  (0.091175); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 218.07
//
Query:       MMETSP1061-20121228|8771_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-12   43.7   0.0    9.9e-06   22.4   0.0    2.3  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    7.1e-09   32.9   0.1    2.9e-07   27.6   0.0    3.1  4  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    1.8e-08   31.4   0.0     0.0019   14.9   0.0    2.8  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    1.6e-06   25.1   0.0    0.00096   15.9   0.0    2.1  2  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
    5.4e-06   24.1   0.0     0.0008   17.0   0.0    2.2  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    9.5e-05   19.0   0.0    0.00072   16.1   0.0    2.0  2  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
     0.0001   19.1   0.1    0.00017   18.3   0.0    1.3  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
     0.0017   15.0   0.1     0.0025   14.4   0.0    1.2  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      0.005   13.7   0.1       0.72    6.6   0.1    2.1  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.009   12.7   0.1      0.013   12.1   0.1    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
  ------ inclusion threshold ------
      0.028   10.8   0.0      0.041   10.3   0.0    1.1  1  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
      0.031   10.5   0.0      0.044   10.0   0.0    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
      0.039   11.0   0.0      0.059   10.4   0.0    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.3e-07   0.00013       2     172 ..      29     198 ..      28     209 .. 0.83
   2 !   22.4   0.0   3.1e-08   9.9e-06     280     315 ..     398     433 ..     392     446 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.3e-07
   TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaaekakspafdnRvsAlsaasiellekigvwdklekkraqpiqkirvsdagskgalefdaaevgaeaLgyvvenkvlqqaLlealqekkn..kvtllapaeveelere.....sdaveltlsdgetleakLlvgADGanSkvrqaag 172
                 ++I+G+G+ Gl+ A+++++++ +   +ve+   ++  s       + l++++ie+l++ g+  ++++   + ++ +  +  ++k   +f+ a + + + g  v+ +++q+ Lle l ++++  +  ll+   + ++++       +   ++l++g++l    l ++DG +Sk+r+ ++
  MMETSP1061-20121228|8771_1  29 VIIAGAGPCGLVAAATFQQRN-IPFVIVEKVSRSTICS--NAGSGFELAPTAIEILQE-GLGIEVSN-FLSTYEGMCFMTVEGK---TFRTAVLPSHYKGGSVNRAEMQNFLLEHLFASPEdeEGVLLCGSGIDSYREVeeggkIKTLVVKLASGRELVGCALLACDGIHSKCRSVMH 198
                 8*****************777.9999999997766333..346678899*******98.57888888.9999999987766543...4666666667789999*************9999988888888888777776566787888999************************9876 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 3.1e-08
   TIGR01988 280 valiGdAAhtvhPlAGQGlNlGlrDvaaLaevlaea 315
                 val+GdAAh   P  GQG+N+ ++D+   a+v+a+ 
  MMETSP1061-20121228|8771_1 398 VALLGDAAHPQTPYLGQGVNMAITDAYIYASVIADC 433
                 89*************************999999875 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.18        56       3      22 ..      29      48 ..      27      53 .. 0.88
   2 ?   -1.1   0.0      0.47   1.5e+02     155     189 ..     163     197 ..     124     203 .. 0.81
   3 !   27.6   0.0   9.1e-10   2.9e-07     335     372 ..     398     435 ..     393     475 .. 0.79
   4 ?   -1.4   0.0      0.58   1.8e+02     252     266 ..     490     504 ..     487     507 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.18
   TIGR01989  3 vvivGgGlvGlalAaalkkn 22
                v+i+G+G+ Gl  Aa++++ 
  MMETSP1061-20121228|8771_1 29 VIIAGAGPCGLVAAATFQQR 48
                89**********99998865 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.47
   TIGR01989 155 dnsnlvkikledgetlktklliGADGanSkvRkaa 189
                  ++++  +kl  g++l    l+  DG  Sk R ++
  MMETSP1061-20121228|8771_1 163 GKIKTLVVKLASGRELVGCALLACDGIHSKCRSVM 197
                 566777899*******999999*********9876 PP

  == domain 3    score: 27.6 bits;  conditional E-value: 9.1e-10
   TIGR01989 335 vALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavk 372
                 vAL+GDAAH   P  GqGvN+ ++D+ + ++++a+ + 
  MMETSP1061-20121228|8771_1 398 VALLGDAAHPQTPYLGQGVNMAITDAYIYASVIADCLD 435
                 9*******************************998764 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 0.58
   TIGR01989 252 lkslpeeeFvdalNa 266
                  ks+++eeFv+++N+
  MMETSP1061-20121228|8771_1 490 IKSISPEEFVHQINN 504
                 6899**********8 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.9e-05     0.009       2     171 ..      29     200 ..      28     210 .. 0.75
   2 !   14.9   0.0     6e-06    0.0019     278     312 ..     398     432 ..     387     478 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.9e-05
   TIGR01984   2 viivGgglvGlslAlaLsrksklkialieaksaeaakssfdarslalsagskqilek.lgiweklekeatpikdihvsdrgafgalelraeevalpaLGyVveladlkqallkrl...aekkkiklyapaelkeierekde.....aevkldneqkleakLlvaAdGanskvreslsia 171
                 vii G+g+ Gl+ A ++++   +   ++e+ s +    s+    + l+  +++il++ lgi+  ++++    + ++       +   +r++ +  +  G  v+ a++++ ll++l    e ++  l++ + ++++ + ++        vkl+++++l +  l a+dG +sk+r+ ++ +
  MMETSP1061-20121228|8771_1  29 VIIAGAGPCGLVAAATFQQRN-IPFVIVEKVSRSTI-CSNAGSGFELAPTAIEILQEgLGIE--VSNFLSTYEGMCFMTV---EGKTFRTAVLPSHYKGGSVNRAEMQNFLLEHLfasPEDEEGVLLCGSGIDSYREVEEGgkiktLVVKLASGRELVGCALLACDGIHSKCRSVMHPP 200
                 89******************9.*******9999998.777778899*********8746664..4455555555554433...22345555555566688899999999999988322233445577888888888777776666677899999999999999*********9988755 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 6e-06
   TIGR01984 278 vvlignaAqtlhPiAgQGfNlGlrDvltLaevled 312
                 v+l+g+aA+   P  gQG N+ + D+   a+v++d
  MMETSP1061-20121228|8771_1 398 VALLGDAAHPQTPYLGQGVNMAITDAYIYASVIAD 432
                 899***********************999999876 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     3e-06   0.00096       4     168 ..      28     196 ..      25     206 .. 0.74
   2 !    7.0   0.0    0.0015      0.47     279     315 ..     395     432 ..     390     448 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3e-06
   TIGR02360   4 qvaiigaGpsGlllgqllhkaGidavilerksrdyvlgriraGv.leqgtvdlleeagvderldreglvheGve.iafegekvrvdl.kkltggksv.lvyGqtevtrdlyeareaaglktvyeadevrlhdle..sdrpkvtfekdgeekrldcdfiaGcdGfhGvsrks 168
                  v i gaGp+Gl+ +   +++ i  vi+e+ sr  + +   +G  l  +++++l+e g + ++++   ++eG+  +++eg+++r  +   + +g sv     q+ +   l+ + e  ++  +  +      ++e  ++  ++  + +  ++ + c  +a cdG h  +r  
  MMETSP1061-20121228|8771_1  28 PVIIAGAGPCGLVAAATFQQRNIPFVIVEKVSRSTICSNAGSGFeLAPTAIEILQE-GLGIEVSNFLSTYEGMCfMTVEGKTFRTAVlPSHYKGGSVnRAEMQNFLLEHLFASPEDEEGVLLCGSGIDSYREVEegGKIKTLVVKLASGRELVGCALLA-CDGIHSKCRSV 196
                 68999*************************************98567777788766.677777777778888752567888888764244544445415667888888999998888888887765555555551044556667777788889998775.99999999875 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0015
   TIGR02360 279 Grlf.laGdaahivpptGakGlnlaasdvaylyealle 315
                 G+l  l Gdaah   p   +G+n+a++d ++  + + +
  MMETSP1061-20121228|8771_1 395 GKLVaLLGDAAHPQTPYLGQGVNMAITDAYIYASVIAD 432
                 5553389*********************8766655554 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.5e-06    0.0008       3     164 ..      29     207 ..      28     224 .. 0.74
   2 ?    4.9   0.0     0.012       3.8     265     295 ..     398     428 ..     380     430 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.5e-06
   TIGR02032   3 vvvvGaGpaGssaAlrlakkGlrVlllekkelprekeCgga.....lskraveelelpk....elivnevrkariispngekveieee..eeealvidRkefDelLaek..A..qeagaelllettvlsveied.....ekvkvevredekkevtakivigAdGakskvakklg.lkkekrel 164
                 v++ GaGp G  aA++ ++  +  +++ek   +r+  C++a     l + a+e l++      +  +++ ++  +++ +g++ ++     + ++  ++R e+ ++L+e+  A  ++++  ll++  + s ++ +     ++ +v+++    +e+ + ++ + dG +sk ++ +   + ++ ++
  MMETSP1061-20121228|8771_1  29 VIIAGAGPCGLVAAATFQQRNIPFVIVEKV--SRSTICSNAgsgfeLAPTAIEILQEGLgievSNFLSTYEGMCFMTVEGKTFRTAVLpsHYKGGSVNRAEMQNFLLEHlfAspEDEEGVLLCGSGIDSYREVEeggkiKTLVVKLAS--GRELVGCALLACDGIHSKCRSVMHpPETDPLHY 207
                 8***************************98..777778776222335555555555544888666777777888888888775555445788999*********99987442225566678899998888877766666666666665..589999999*********999887333555555 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.012
   TIGR02032 265 vllvGDAAglVkPltGeGIayamvagklAae 295
                 v l+GDAA    P  G G+++a++ + + a 
  MMETSP1061-20121228|8771_1 398 VALLGDAAHPQTPYLGQGVNMAITDAYIYAS 428
                 6799*******************98877665 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.15        48     134     165 ..     166     197 ..     110     213 .. 0.81
   2 !   16.1   0.0   2.3e-06   0.00072     293     339 ..     388     435 ..     368     464 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.15
   TIGR03219 134 eevevsfedGteyradlligadGiksalrdyv 165
                 + + v+++ G e     l++ dGi+s  r+ +
  MMETSP1061-20121228|8771_1 166 KTLVVKLASGRELVGCALLACDGIHSKCRSVM 197
                 4556788899999999999********99865 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 2.3e-06
   TIGR03219 293 elpgyvhGr.valiGdaahamlphqGaGaGqGledayllarlledtkl 339
                 +lp   +G+ val+Gdaah   p+ G G    + day+ a ++ d   
  MMETSP1061-20121228|8771_1 388 DLPFTSKGKlVALLGDAAHPQTPYLGQGVNMAITDAYIYASVIADCLD 435
                 577777777589****************************99988654 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.4e-07   0.00017       2      31 ..      29      58 ..      28      66 .. 0.93

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 5.4e-07
   TIGR04018  2 viiiGaGPiGlaaaieakkaglsyliiekg 31
                vii GaGP+Gl aa   +++++  +i+ek 
  MMETSP1061-20121228|8771_1 29 VIIAGAGPCGLVAAATFQQRNIPFVIVEKV 58
                79**************************95 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   7.8e-06    0.0025       4      43 ..      29      68 ..      26      69 .. 0.95

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 7.8e-06
   TIGR01350  4 vvviGgGpgGYvaAiraaqlglkvalvekeklGGtClnvG 43
                v++ G+Gp G vaA +  q     ++vek +   +C n+G
  MMETSP1061-20121228|8771_1 29 VIIAGAGPCGLVAAATFQQRNIPFVIVEKVSRSTICSNAG 68
                89************************************99 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0023      0.72       3      39 ..      29      64 ..      27      70 .. 0.88
   2 !    4.9   0.0    0.0074       2.3     262     305 ..     393     437 ..     387     448 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0023
   TIGR02023  3 vlviGggpsGaaaaetLakagievillerelarikPC 39
                v++ G+gp G  aa t ++ +i  +++e+  +r   C
  MMETSP1061-20121228|8771_1 29 VIIAGAGPCGLVAAATFQQRNIPFVIVEKV-SRSTIC 64
                899*************************97.666666 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0074
   TIGR02023 262 dser.vvLvGDaaGlvakasGeGiyyamksGklaaeaivealksg 305
                 ++++ v+L GDaa   ++  G G+  a+    + a  i++ l++ 
  MMETSP1061-20121228|8771_1 393 SKGKlVALLGDAAHPQTPYLGQGVNMAITDAYIYASVIADCLDKN 437
                 5667799*****************************999999854 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.1   4.2e-05     0.013       1      31 [.      29      59 ..      29      63 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.2e-05
   TIGR00275  1 viiiGgGaaGlmaAitaaeegakVlllEknk 31
                vii G+G+ Gl+aA+t ++++   +++Ek +
  MMETSP1061-20121228|8771_1 29 VIIAGAGPCGLVAAATFQQRNIPFVIVEKVS 59
                79**************************976 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00013     0.041     192     236 ..      29      73 ..      24     100 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00013
   TIGR02819 192 vyiagagpvglaaaasarllgaavvivgdlneerlaqarsfgcet 236
                 v iagagp gl aaa+ +      viv  ++   +      g+e 
  MMETSP1061-20121228|8771_1  29 VIIAGAGPCGLVAAATFQQRNIPFVIVEKVSRSTICSNAGSGFEL 73 
                 88***************************9999999988888885 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00014     0.044     378     412 ..      23      59 ..       6      64 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00014
   TIGR03997 378 rrkk..vlvvGgGPaGleaaataarrGhrvtlleree 412
                  +kk  v+++G+GP Gl aaat  +r    +++e+ +
  MMETSP1061-20121228|8771_1  23 DPKKlpVIIAGAGPCGLVAAATFQQRNIPFVIVEKVS 59 
                 3344338999****************99999998865 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00019     0.059      23      52 ..      28      57 ..      19      93 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00019
   TIGR00292 23 DviivGaGpsGLtaayylakeglkvvvler 52
                 vii+GaGp GL aa  + ++ +  v++e+
  MMETSP1061-20121228|8771_1 28 PVIIAGAGPCGLVAAATFQQRNIPFVIVEK 57
                59****************999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 2184.21
//
Query:       MMETSP1061-20121228|8774_1  [L=946]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1013.4   2.0   2.1e-302 1003.2   1.4    2.9  1  TIGR00396 leuS_bact: leucine--tRNA ligase
    5.5e-79  264.0  14.1    6.5e-33  111.6   1.5    7.2  6  TIGR00422 valS: valine--tRNA ligase
    8.5e-59  197.3   5.7    4.3e-29   99.1   4.9    4.9  3  TIGR00392 ileS: isoleucine--tRNA ligase
    2.3e-53  179.3   3.2    8.8e-19   64.8   0.0    3.7  3  TIGR00395 leuS_arch: leucine--tRNA ligase
    3.2e-33  113.1   0.2    6.7e-20   69.1   0.0    4.2  4  TIGR00398 metG: methionine--tRNA ligase
    2.3e-09   34.4   0.0    0.00017   18.4   0.0    2.2  2  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
    1.7e-06   25.2   0.0    3.7e-05   20.8   0.0    2.1  2  TIGR00435 cysS: cysteine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1003.2   1.4  3.6e-305  2.1e-302       3     842 ..     126     945 ..     124     946 .] 0.94

  Alignments for each domain:
  == domain 1    score: 1003.2 bits;  conditional E-value: 3.6e-305
   TIGR00396   3 leeieekwqqkwkekkvkkv.eedsekkkyYiLsmfPYPsga.lHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaiergtaPakwteeniakmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevidsdGrseRgdasvekkelkqwvlkitkyaekLledLeeLeWpesvkemqrnWiGkseGveleFkiedekekiavfttrpdtlfgvtylalaaehplvkkvakenkk..vaefikkaeqkseaertkeekekkgvktglkainPltkekiPiyvanyvlaeYGtgavmgvpahderDfeFakkyklkikevikkaekdlk.eealteegvlvnsgefsglkseeakekiikllekekkgkkkvnYklrDWlvsRqRYWGePiPiih................ledgna.......vpvpeedLPvkLPeleeldgeG.vesPlskikewvkvkkpslgkkakretdtmdtfidssWYylryldpknkekaldkeklekylPvDlYiGGieHavlHLLYaRFfhkllrdlglvstkePfkkLltqGmvlgfvykengkvpadellekdekvkdkedkelvvvslekmskskkngidPqeivkkyGaDalRlyilFasPieksleWdesgleGaeRfldrvynlvkeilsekeaktelkeealeeaekelrrevhkalkkvtedlekkeslntviselmkllnallkakkeelllealkalvtvlspiaPhlaeelaeklgeeeseikqakwpkvdetalvedkvkivvqvngkvkakievakeadeeeveelakkdeevkkylenkkikkvivvknklvnvvi 842
                 + e+e kwq++w+e++++k+ e+d++k+k+Y+L+mfPYPsga lH+GH+++Yt++Dv++Ry r+ g++vlhPiG+D+FGlPae+ a+++gt+Pa+ t++nia++k+ql++lgfsydw++elattd +Y k+tqwiFl+l++kgLa++ e++vnwcp+++tvLaneevi  +G seRgd++v++  l+qwvlkit+ya++L ++L+ L+Wp+   + q++WiGks G e+ F++e+++e+++vfttrpdtl gvty++la+ehplv++++  ++k  v++++ +++++s+++rt+  kek+gv+tg++  +P++++++P++v++yvl +YGtgavm+vpahd rDfeFakk+ l++k v++++e +l+ eea+te gv vnsgef+gl++++ k++i+++le+ +kg ++++YklrDW++sRqRYWGePiPi +                 +d++        +pv e dLP++LP  +++++       l++ k+w   +k+  gk   ret+tm+++++s+WYy+r+ldp+n+++a++k++ + ++PvDlYiGG+eHavlHLLYaRF+h++l+dlg+ ++ ePf+kL+ qGm+lg     +g+                           kmsks++n+++P+++v + GaDalRly++F++P+e+ + W++ ++ G+ Rf +r+yn v+             +++++e ++e++r +hk++kkvted+e+ + +nt+is++m+l+n+l++  + e+ lea+++l  ++sp+aPhl ee +  lg+e  ++  a w+++de++ v+++v+i vqvngk++++i+++++ade+   ++ak+ ++v+ ++++k+++k+i+v+++++n++ 
  MMETSP1061-20121228|8774_1 126 FAEVEPKWQKYWEENNTFKTpERDTSKPKKYVLDMFPYPSGAgLHVGHPEGYTASDVMARYWRMTGHDVLHPIGWDSFGLPAEQFAVQTGTQPAETTKKNIANFKRQLKMLGFSYDWEKELATTDTNYVKWTQWIFLQLYKKGLAEQSEVSVNWCPALGTVLANEEVI--NGLSERGDHPVQRLPLRQWVLKITEYADRLEDGLDGLNWPSGTMTSQQQWIGKSIGCEIVFDVEGSDETVKVFTTRPDTLLGVTYVTLAPEHPLVSSITIPEQKeaVDKYVTATSSRSDLDRTSS-KEKTGVFTGAYVTHPISGDRVPVWVGDYVLGSYGTGAVMAVPAHDSRDFEFAKKFDLEMKWVVEPKEGELNmEEAFTEPGVAVNSGEFDGLNTKKCKKAITSKLEEINKGGAQTTYKLRDWVFSRQRYWGEPIPIYFpvdfpegvdpssqdptSDDCEHtirydqpIPVDEADLPLELPYMKNFEPGDdPAGCLARAKDWRYFEKD--GKWFARETNTMPQWAGSCWYYFRFLDPNNTDEAFSKQMDKDWMPVDLYIGGAEHAVLHLLYARFWHQVLFDLGFSEHPEPFEKLVHQGMILG----SDGE---------------------------KMSKSRGNVVNPDDVVGEQGADALRLYEMFMGPLEAVKPWQTGQVPGVVRFQNRLYNAVNTAA----------KSKTTEMDEETTRILHKTMKKVTEDIESMS-FNTAISAMMVLTNHLISLGD-EVPLEAAEKLALMVSPLAPHLGEECWSILGHED-SLAYAPWVEYDEALCVDNEVSIGVQVNGKMRGQITISADADEDAAVSAAKEMDRVQAQIDGKTVRKIIYVPGRILNIIA 945
                 789**************998256899*********************************************************************************************************************************************9..*************************************************************************************************997776667*****************96.******************************************************************999999***************************************************************864444444434333333467754222222279999**************94445567*********9999..55566***************************************************************************************....5776...........................**********************************************************99822..........235678899999***************998.*****************999.9*****************************665.777888**********************************************************************986 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.6   1.5   1.1e-35   6.5e-33       3     189 ..     122     294 ..     120     300 .. 0.86
   2 ?    0.1   0.0     0.055        32     342     395 ..     295     344 ..     293     349 .. 0.79
   3 !    6.0   0.1   0.00088      0.52     201     234 ..     354     385 ..     348     392 .. 0.83
   4 !   50.9   0.0   2.3e-17   1.4e-14     240     328 ..     425     525 ..     418     534 .. 0.92
   5 !   84.2   0.5     2e-27   1.2e-24     397     639 ..     535     822 ..     528     829 .. 0.75
   6 !    9.4   0.0   8.2e-05     0.048     678     718 ..     841     880 ..     835     924 .. 0.88

  Alignments for each domain:
  == domain 1    score: 111.6 bits;  conditional E-value: 1.1e-35
   TIGR00422   3 kkYdpkevekklyekweesgvfkpdedeek..esfiiviPPPnvTGs.lHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklkaegktkedlgreefvekilewkeesgetikeqlkrLGvsldwsrerfTldeelskavkeaFvrlyeeglIyrgkrlvnwdpkletaisdlEvey 189
                 + Y ++eve k+++ wee+++fk+ e ++   +++++++ P ++ G+ lH+GH    +  D+++Ry rm g++vl++ G+D  g++ ++   ++                  +  e ++++++  k+qlk LG+s+dw++e  T d ++ k ++  F++ly++gl  + +  vnw+p+l t++++ Ev++
  MMETSP1061-20121228|8774_1 122 TGYPFAEVEPKWQKYWEENNTFKTPERDTSkpKKYVLDMFP-YPSGAgLHVGHPEGYTASDVMARYWRMTGHDVLHPIGWDSFGLPAEQFAVQTG----------------TQPAETTKKNIANFKRQLKMLGFSYDWEKELATTDTNYVKWTQWIFLQLYKKGLAEQSEVSVNWCPALGTVLANEEVIN 294
                 67999*****************976544442466**99965.555544**************************************875433222................223567788899999**************************************************************98 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.055
   TIGR00422 342 gtceRsktvvEpllskQWfVkvekLadkaleaaekegeikfvPkrfekeylsWl 395
                 g +eR++++v  l  +QW  k+++ ad++ + ++    +++ P+   ++ ++W+
  MMETSP1061-20121228|8774_1 295 GLSERGDHPVQRLPLRQWVLKITEYADRLEDGLDG---LNW-PSGTMTSQQQWI 344
                 789*********************99999887773...555.444444555665 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.00088
   TIGR00422 201 yklangsgkdklvvATTRPEtllgdtavaVhPeD 234
                 + ++ ++  +++ v TTRP+tllg t v   Pe 
  MMETSP1061-20121228|8774_1 354 FDVEGSD--ETVKVFTTRPDTLLGVTYVTLAPEH 385
                 5555555..6899****************99985 PP

  == domain 4    score: 50.9 bits;  conditional E-value: 2.3e-17
   TIGR00422 240 lvgkkvilPlvnrkipiiaDeevdkefGtGvvkvtpahDknDyevgkrhklelinild.edgklneea...........geyqglerfearkkvvedlkee 328
                 ++g +v++P+ + ++p+   ++v   +GtG+v+  pahD  D+e+ k++ le+  +++ ++g+ln e            ge+ gl++++++k++  +l+e 
  MMETSP1061-20121228|8774_1 425 FTGAYVTHPISGDRVPVWVGDYVLGSYGTGAVMAVPAHDSRDFEFAKKFDLEMKWVVEpKEGELNMEEaftepgvavnsGEFDGLNTKKCKKAITSKLEEI 525
                 78999***************************************************98578***966559****************************985 PP

  == domain 5    score: 84.2 bits;  conditional E-value: 2e-27
   TIGR00422 397 elkdWcISRQliwghriPvwy...........................................eketgevvvakeeaeekektklgs.........................keleqdeDVLDTWfsSslwplstlgWpeekkdl.....kkfyptsllvtg..fDIiffWvarmillslaltg....qvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkveaarkFlnKlwnasrfvlmnledkkeleegeeklsladrwilsklnelikevrealdkyrfaeaakaly 639
                 +l+dW+ SRQ++wg +iP+++                                                                  +                         k + +++  +  W  S    +  l+ +++++++     k++ p++l + g  + ++    ar   + l+  g      Pf++++ +g++ + +g+KmSKS+gNv++P d++ + GaDalR++ +          +++ +v +  +F+n+l+na   + +  +              +d      l++++k+v+e++++ +f++a++a++
  MMETSP1061-20121228|8774_1 535 KLRDWVFSRQRYWGEPIPIYFpvdfpegvdpssqdptsddcehtirydqpipvdeadlplelpyM----------------------KnfepgddpagclarakdwryfekdgKWFARETNTMPQWAGSCWYYFRFLDPNNTDEAFskqmdKDWMPVDLYIGGaeHAVLHLLYARFWHQVLFDLGfsehPEPFEKLVHQGMILGSDGEKMSKSRGNVVNPDDVVGEQGADALRLYEMFMGPLEAVKPWQTGQVPGVVRFQNRLYNAVNTAAKSKTT------------EMDEETTRILHKTMKKVTEDIESMSFNTAISAMM 822
                 89*******************88888888888888877775555555554444444444444441......................0344455555666666666666666699***********************99777666222235688999999886677876555554444443333333489*******************************************9999888666668*******************8766655332............2333334457789999999999999999988765 PP

  == domain 6    score: 9.4 bits;  conditional E-value: 8.2e-05
   TIGR00422 678 dkllrllhpfiPflteeiyqklkekadsimlasyPeveeel 718
                 +kl  +++p++P+l ee+++ l ++ ds++ a++ e++e+l
  MMETSP1061-20121228|8774_1 841 EKLALMVSPLAPHLGEECWSILGHE-DSLAYAPWVEYDEAL 880
                 678889*****************99.********9999865 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   4.9   7.3e-32   4.3e-29       6     392 ..     124     524 ..     119     528 .. 0.76
   2 !   83.5   0.0   3.8e-27   2.2e-24     459     713 ..     535     807 ..     529     831 .. 0.75
   3 ?    1.2   0.0     0.029        17     765     809 ..     838     879 ..     832     900 .. 0.80

  Alignments for each domain:
  == domain 1    score: 99.1 bits;  conditional E-value: 7.3e-32
   TIGR00392   6 anlskkeekilkkweekdifekvkkkkedkkefvlhdGPPyanGe.ihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgiekkeeiesleveefrekcrefalkaieeqkeqfqrlgvlvDfekpYltldkeyeesvlellkelaekgllkrdlkvvywspeletaLaeaEveykeykdvkdpsiyvkfkvkkeekteakvkl........................................slliWTtTPWTLpsNlaiavnpdleYalveleskeevlilakkllekllkkage.edle.iikkvkgsdlegleyehplsekkeqleevafvvlggdhVttedGtGivHtAPghGeeDyevgkkygleevllpv..dekgvyteevadlkgrfvkdadkd...vlkankaiiekLke 392
                 + ++++e+k +k+wee++ f++ ++    k++++  d  Py +G+ +h+gh    +  D++ ry++m+G++v +  GWD  GLP E+   +   +                   e   k+i++ k q++ lg   D+ek+  t d++y++ + +++ +l++kgl +++   v+w+p+l t La+ Ev +    ++ d  +  ++++ +   + ++ +                                         ++ + Tt P TL+  + +++ p+   +   +     ++  +k+ ++k+++++ + +dl  + +k k     g + +hp+s +        +v +g d+V    GtG+v   P+h   D+e +kk +le +   v  +e   ++ee+  + g+ v+  + d     k +kai++kL+e
  MMETSP1061-20121228|8774_1 124 YPFAEVEPKWQKYWEENNTFKTPER-DTSKPKKYVLDMFPYPSGAgLHVGHPEGYTASDVMARYWRMTGHDVLHPIGWDSFGLPAEQFAVQTGTQP----A-------------ETTKKNIANFKRQLKMLGFSYDWEKELATTDTNYVKWTQWIFLQLYKKGLAEQSEVSVNWCPALGTVLANEEVINGL-SERGDHPVQ-RLPLRQWVLKITEYADrledgldglnwpsgtmtsqqqwigksigceivfdvegsdeTVKVFTTRPDTLLGVTYVTLAPEHPLVS--SI----TIPEQKEAVDKYVTATSSrSDLDrTSSKEKTGVFTGAYVTHPISGDRV------PVWVG-DYVLGSYGTGAVMAVPAHDSRDFEFAKKFDLE-MKWVVepKEGELNMEEAFTEPGVAVNSGEFDglnTKKCKKAITSKLEE 524
                 568899**************98777.556677778899******769**************************************98665543333....2.............2445889999**************************************************************98643.555555443.344332211111111123457788999999999**********************9999*******************976543..22....222334444444443332112220222333344566777888888877......66665.*******************************6.444441144455677777777777765444432266677888888876 PP

  == domain 2    score: 83.5 bits;  conditional E-value: 3.8e-27
   TIGR00392 459 nrkdWciSRqRyWGvPipvwvaekteelivvgsieeleekie..........................kkgidawiedlhkdlldkitlkskeggeykreedvlDvWfdSGsspyavleyklen.....ekkkevfpadlilEGsDQ.......trGWFyssllisvalsdkapykkvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvassdpaedlk.fseeilkevaekllkilnntlrFlllyanLdkfkpeekslkveklkelDrwilsklnslveevee 713
                 + +dW  SRqRyWG Pip++   ++ e ++ +s + +++  e                          + g d           d+ +++++ g+ + re++++  W  S   +   l+ ++++     + +k+++p+dl++ G           r W + +  ++       p++k++ +G++l ++G+KMSKs gNvv+p++v+ + GaD+lRly ++  p e +k  ++  +  v++ +++ l+n+++ ++  ++               ++e+D  +   l++++++v+e
  MMETSP1061-20121228|8774_1 535 KLRDWVFSRQRYWGEPIPIYFPVDFPEGVDPSSQDPTSDDCEhtirydqpipvdeadlplelpymknfEPGDD--PAGCLARAKDWRYFEKD-GKWFARETNTMPQWAGSCWYYFRFLDPNNTDeafskQMDKDWMPVDLYIGGAEHavlhllyARFWHQVLFDLGFS-EHPEPFEKLVHQGMILGSDGEKMSKSRGNVVNPDDVVGEQGADALRLYEMFMGPLEAVKpWQTGQVPGVVR-FQNRLYNAVNTAA-KSK---------------TTEMDEETTRILHKTMKKVTE 807
                 579************************9999999999999999999****************99875544444..34456677899999985.9*************7665555555554443377876788999*********997333333358999998888865.4567********************************************88887777666145556666766.6666666555444.222...............233333333334444444444 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.029
   TIGR00392 765 eiletlvkllapilpflaeeiyqnlkeekkeesvhlnefpevdee 809
                 e++e+l+ +++p++p+l ee ++ l +   e s   ++++e de 
  MMETSP1061-20121228|8774_1 838 EAAEKLALMVSPLAPHLGEECWSILGH---EDSLAYAPWVEYDEA 879
                 78899999***************9988...568888888887554 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.1   1.5e-18   8.8e-16       2      85 ..     128     214 ..     127     231 .. 0.79
   2 !   57.8   0.2     2e-19   1.2e-16     124     320 ..     229     471 ..     216     489 .. 0.82
   3 !   64.8   0.0   1.5e-21   8.8e-19     570     805 ..     665     892 ..     654     925 .. 0.81

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 1.5e-18
   TIGR00395   2 eiekkyqkrWeeekifeadpddre...kffltvayPylnGv.lhaGhlrtftivevvarfermkgknvLfplgfhvtGtPilglaeki 85 
                 e+e k+qk Wee++ f++   d     k++l   +Py++G+ lh+Gh   +t ++v+ar+ rm g+ vL+p+g+   G P    a + 
  MMETSP1061-20121228|8774_1 128 EVEPKWQKYWEENNTFKTPERDTSkpkKYVLD-MFPYPSGAgLHVGHPEGYTASDVMARYWRMTGHDVLHPIGWDSFGLPAEQFAVQT 214
                 799*************9864443334255555.6******77*************************************987777554 PP

  == domain 2    score: 57.8 bits;  conditional E-value: 2e-19
   TIGR00395 124 aesalkslGysidWrrefkttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsG...egvtiveyilik...fkledga........................................lylvaatlrPetvyGvtnvfvnPeieyvivev.gdekfivskeaveklsyqklklkvieevkgkqligkkvkaPvvgkevpiLPaefvdaekatGvvlsvPahaPadyialk 320
                  +++lk lG+s dW +e+ ttd +y ++ +W + +L ++Gl  + e  v++cp  +    + ++ +G    g  +v+ + ++   +k+ + a                                          + + t rP+t+ Gvt v + Pe   v   +  ++k  v k  +   s  +l+ + + + k++ + g +v+ P+ g +vp+   ++v   ++tG v++vPah   d+   k
  MMETSP1061-20121228|8774_1 229 FKRQLKMLGFSYDWEKELATTDTNYVKWTQWIFLQLYKKGLAEQSEVSVNWCPALGTVLANEEVINGlseRGDHPVQRLPLRqwvLKITEYAdrledgldglnwpsgtmtsqqqwigksigceivfdvegsdETVKVFTTRPDTLLGVTYVTLAPEHPLVSSITiPEQKEAVDKYVTATSSRSDLD-RTSSKEKTGVFTGAYVTHPISGDRVPVWVGDYVLGSYGTGAVMAVPAHDSRDFEFAK 471
                 567899******************************************************999998844223344444333311133334446789999********************************978888999****************999875550455555555555555555555.4555667889***************************************99986544 PP

  == domain 3    score: 64.8 bits;  conditional E-value: 1.5e-21
   TIGR00395 570 yfyPldlrisakdLipnhLtfyifthvaifPeef..WPr...givvnGyvl.legkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaakkrlerlkefaeeiakksdlevgeelsfldrwllsrlnkaikevkealenlelrkavkaalfelkkdvdyyrrrsgenvkdvlaevleaiikLlaPfaPhlaeelyeevGkegfvseakfPevsee.avdkevekaeey 805
                  + P+dl i + +    hL++  f h  +f   f   P     +v +G++l  +g+k+sks+Gn++   ++v + Gad+ rly +  + l+    +++ +v ++ +  +rl++ ++  ak + +e+ ee        +  l+k++k+v+e +e++ +  a+  a+  l++        + ++   v  e  e+ ++++ P+aPhl ee + ++G+e +++ a++ e++e   vd+ev  + ++
  MMETSP1061-20121228|8774_1 665 DWMPVDLYIGGAEHAVLHLLYARFWHQVLFDLGFseHPEpfeKLVHQGMILgSDGEKMSKSRGNVVNPDDVVGEQGADALRLYEMFMGPLEAVKPWQTGQVPGVVRFQNRLYNAVNTAAKSKTTEMDEE-------TTRILHKTMKKVTEDIESMSFNTAI-SAMMVLTNH---LISLG-DE---VPLEAAEKLALMVSPLAPHLGEECWSILGHEDSLAYAPWVEYDEAlCVDNEVSIGVQV 892
                 599**************************97543224541114667787653689**********************************************************9999988864444444.......4445778889999********9999.566666554...34444.33...335678999**********************************983588898876655 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.0   1.1e-22   6.7e-20       7     135 ..     161     292 ..     155     304 .. 0.91
   2 ?    2.8   0.0     0.014       8.1     213     241 ..     525     552 ..     505     556 .. 0.68
   3 !   22.9   0.0   1.2e-08   6.8e-06     312     353 ..     705     747 ..     666     755 .. 0.83
   4 !   12.5   0.1   1.6e-05    0.0093     391     449 ..     769     828 ..     765     842 .. 0.85

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 1.1e-22
   TIGR00398   7 lyYangk.pHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAesegltPkelvdklaeefkklfkllnisfd..rFirTtdeehkeivqkifekllenGyiyekeikglYcvecesflpdryv 135
                  +Y++g+ +H+Gh   + ++Dv+ary r+ G++vl+  g D +G + e+ A + g++P e  +k+ ++fk+++k+l+ s+d  +   Ttd +  + +q if +l+++G+ +++e++  +c++  + l++ +v
  MMETSP1061-20121228|8774_1 161 FPYPSGAgLHVGHPEGYTASDVMARYWRMTGHDVLHPIGWDSFGLPAEQFAVQTGTQPAETTKKNIANFKRQLKMLGFSYDweKELATTDTNYVKWTQWIFLQLYKKGLAEQSEVSVNWCPALGTVLANEEV 292
                 689998658***********************************************************************9434567**********************************99988887755 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.014
   TIGR00398 213 knvlenflkegLkdlaitRdlvewGipvP 241
                  n+  + +   L+d+  +R+   wG p+P
  MMETSP1061-20121228|8774_1 525 INKGGAQTTYKLRDWVFSRQRY-WGEPIP 552
                 23333445556**********9.*****9 PP

  == domain 3    score: 22.9 bits;  conditional E-value: 1.2e-08
   TIGR00398 312 pkqlvahgyltve.gkkmSkSkgnvvdpedllarygadilRYy 353
                 +++lv +g+++   g+kmSkS+gnvv+p d++ + gad+lR y
  MMETSP1061-20121228|8774_1 705 FEKLVHQGMILGSdGEKMSKSRGNVVNPDDVVGEQGADALRLY 747
                 56788889887544***************************98 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 1.6e-05
   TIGR00398 391 lgfikkyfegklksvkea.seedekllkkieealekidealekfefkkaleeilklvseg 449
                 + f+++ ++++  ++k + +e de+ +  ++++++k+ e +e+++f+ a+++++ l+++ 
  MMETSP1061-20121228|8774_1 769 VRFQNRLYNAVNTAAKSKtTEMDEETTRILHKTMKKVTEDIESMSFNTAISAMMVLTNHL 828
                 67888888877666655558999999****************************999876 PP

>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   7.6e-06    0.0045      36     117 ..     152     236 ..     131     239 .. 0.82
   2 !   18.4   0.0   2.9e-07   0.00017     275     332 ..     707     765 ..     699     840 .. 0.62

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.6e-06
   TIGR03447  36 easlyvcGitPydat...hlGhaatylafdlvnrvlldaghkvhyvqnvtdvddPlleraerdGvdwrelgeseidlfredmeal 117
                 + + yv  + Py +    h+Gh   y a d++ r+++ +gh+v +         P  + a ++G+   e ++++i+ f++ ++ l
  MMETSP1061-20121228|8774_1 152 KPKKYVLDMFPYPSGaglHVGHPEGYTASDVMARYWRMTGHDVLHPIGWDSFGLPAEQFAVQTGTQPAETTKKNIANFKRQLKML 236
                 5577999999**874445*************************988888888888888888888888888888888888877665 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.9e-07
   TIGR03447 275 hyvhagmi.gldGekmskskGnlvlvsklr.aaGeePaairl.avlaghyredrewtdevl 332
                 + vh gmi g dGekmsks+Gn+v    +  ++G +  a+rl  ++ g     + w++ ++
  MMETSP1061-20121228|8774_1 707 KLVHQGMIlGSDGEKMSKSRGNVVNPDDVVgEQGAD--ALRLyEMFMGPLEAVKPWQTGQV 765
                 679***9879************99876654144444..56663466677777777766554 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.03        18      35      61 ..     169     195 ..     166     275 .. 0.84
   2 !   20.8   0.0   6.4e-08   3.7e-05     249     373 ..     704     827 ..     661     860 .. 0.66

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.03
   TIGR00435  35 sHlGhaRtlvvfDvlrrilqylgYdvq 61 
                 +H+Gh   + + Dv++r+ +++g dv 
  MMETSP1061-20121228|8774_1 169 LHVGHPEGYTASDVMARYWRMTGHDVL 195
                 6***********************996 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 6.4e-08
   TIGR00435 249 lvkyflHngflk.iegeKmSKSlgNfitikdllkkfdpralRlllls.vhyrnqldfseelleeaknalerlakalralkedlasakeiskkksplekefeaefvEaldddlntaealavlselvkk 373
                   +  +H+g++   +geKmSKS+gN++   d++ +  + alRl+ +     +    ++  ++  + +  +rl++a++++ ++ +  +e+ ++++   ++  ++++E ++  +++ +a+++++ l ++
  MMETSP1061-20121228|8774_1 704 PFEKLVHQGMILgSDGEKMSKSRGNVVNPDDVVGEQGADALRLYEMFmGPLEAVKPWQTGQVPGVVRFQNRLYNAVNTAAKSKT--TEMDEETTRILHKTMKKVTEDIE-SMSFNTAISAMMVLTNH 827
                 456689***975389***************************885540445555558888888888999999999887666555..33444444444445555555543.34555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.81u 0.18s 00:00:00.99 Elapsed: 00:00:00.72
# Mc/sec: 1734.19
//
Query:       MMETSP1061-20121228|8778_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 600.55
//
Query:       MMETSP1061-20121228|8782_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1182.62
//
Query:       MMETSP1061-20121228|8783_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 217.78
//
Query:       MMETSP1061-20121228|8784_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 400.68
//
Query:       MMETSP1061-20121228|8787_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 508.16
//
Query:       MMETSP1061-20121228|8777_1  [L=538]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-138  458.5   0.1   2.9e-138  458.2   0.1    1.1  1  TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
    1.2e-66  221.5   0.0    1.8e-66  220.9   0.0    1.3  1  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    7.7e-14   49.7   0.0    1.3e-13   49.0   0.0    1.3  1  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    1.1e-13   47.9   0.0    1.5e-13   47.5   0.0    1.1  1  TIGR01815 TrpE-clade3: anthranilate synthase
      2e-11   40.7   0.0    2.8e-11   40.2   0.0    1.1  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
    5.3e-11   39.9   0.0    3.2e-09   34.1   0.0    2.5  3  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    1.4e-06   25.6   0.0     0.0001   19.4   0.0    2.3  2  TIGR00552 nadE: NAD+ synthetase
    9.3e-06   23.4   0.0     0.0011   16.7   0.0    2.4  1  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
    0.00029   17.8   0.0    0.00042   17.2   0.0    1.2  1  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
     0.0014   16.1   0.1     0.0058   14.1   0.1    2.0  1  TIGR00268 TIGR00268: TIGR00268 family protein
     0.0024   15.0   0.1     0.0057   13.8   0.0    1.7  2  TIGR00032 argG: argininosuccinate synthase
     0.0047   13.9   0.0     0.0076   13.2   0.0    1.3  1  TIGR00342 TIGR00342: thiamine biosynthesis/tRNA modification protein ThiI
  ------ inclusion threshold ------
      0.012   12.3   0.0      0.026   11.2   0.0    1.5  2  TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
      0.024   11.9   0.1      0.049   10.9   0.0    1.5  1  TIGR03573 WbuX: N-acetyl sugar amidotransferase
      0.043   11.6   0.0      0.068   10.9   0.0    1.4  1  TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase


Domain annotation for each model (and alignments):
>> TIGR00884  guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.2   0.1  1.1e-140  2.9e-138       3     310 .]     223     538 .]     221     538 .] 0.98

  Alignments for each domain:
  == domain 1    score: 458.2 bits;  conditional E-value: 1.1e-140
   TIGR00884   3 ieeaveeirekvgdakviialsGGvdssvaavllhkaigdrltavfvdkGllrkgeaekvkktfkeklglnlvvvdakeeflkklkGvtdPeekrkiiGrvfievfeeeakklke.....veylvqGtlypdviesa...gkakkikshhnvgGlpeelklklvePlrelfkdevrklgkelGlpeelvarqPfPGPGlavrvlGevtkekleivrkadaiveeelkkagleeklwqafavlldvksvGvkGdkrtydkvvalravesldamtadvaelpydlleriskrivneveevsrvvyditskPPatiewe 310
                 ++e +ee+r++vgd +vi a+sGGvds+vaavl+++aigdr++a++vd+G lrk+ea++  k ++++ ++nl+vvda+++fl+klkGvt+Pe+krkiiG +fi++f+ee+ k++       eyl+qGtlypdvies    g +++ik+hhnvgGlp +++lkl+eP+relfkdevr+lg ++G+ e+ v+r+PfPGPGla+r+lGevt+e+++i+++adaiv+eel k+g ++k+ qaf+vll++k+vGv+Gd+rty++v ++r ve++d mtad+ +lpyd+++ +s+r++nev++++r+ ydi+skPPatiewe
  MMETSP1061-20121228|8777_1 223 AKEFIEEVRKQVGDGHVIGAVSGGVDSTVAAVLMTQAIGDRFHAFMVDNGCLRKDEAKNCLKRMRDECHVNLRVVDASDRFLDKLKGVTEPEKKRKIIGTTFIDIFQEESAKIEAelgvkCEYLLQGTLYPDVIESIsykGPSATIKTHHNVGGLPASMHLKLIEPMRELFKDEVRELGMAMGIDEKSVWRHPFPGPGLAIRILGEVTRERVKILQEADAIVIEELYKSGHYRKIGQAFVVLLPCKTVGVMGDSRTYENVASVRCVETTDYMTADFYHLPYDVMSTMSSRVINEVRGINRLCYDISSKPPATIEWE 538
                 5788*************************************************************************************************************98888889***************977677*****************************************************************************************************************************************************************************8 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.9   0.0   6.7e-69   1.8e-66       1     187 [.      21     213 ..      21     214 .. 0.94

  Alignments for each domain:
  == domain 1    score: 220.9 bits;  conditional E-value: 6.7e-69
   TIGR00888   1 ilvldfgsqYaqliaRrlrelgvyselvpatttleeikevepkgiilsGgPesvkaenaekvdekifel....gvPvlGiCyGmqllakalGgeveraekreygkaele.vld.edelfkglekelkvWmshgDkvkelPegfkvlaksencpvaalkkeekklyGvqfhPevthtekGkellenfvkdvcka 187
                 i +ldfgsqY++liaRr+rel+vy+el+++++++e++ + e  ++ilsGgP+sv++ +a++v+e +++l    ++PvlGiCyGmq la+++Ggev+++ k+eygk  ++ v   ++++f+g+++e+++WmshgDk+++ P+gf  +a ++n+++ ++++ ek+++G+qfhPevth+  Gk++lenf++++++a
  MMETSP1061-20121228|8777_1  21 IAILDFGSQYSHLIARRVRELNVYCELYSCQVPAEQLGKHELVAVILSGGPSSVYDADAPHVSEGVWKLiaerNLPVLGICYGMQELAHVFGGEVQKGLKHEYGKSIVKrVAGcKSQIFDGMPDEFQMWMSHGDKLTRTPDGFAPVAGTDNAEFVTIENLEKRMWGLQFHPEVTHSPLGKNILENFCVKIAGA 213
                 789**********************************************************9987665433339*******************************999734443679***********************************************************************99876 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   4.8e-16   1.3e-13      46     190 ..      63     207 ..      47     209 .. 0.74

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 4.8e-16
   TIGR00566  46 lsivisPGPctPdeaaiss..leliehlaGk.lPilGvClGhqalaqafGadvvraekvkhGkvseiehngaavfaglfn..PdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPesilselGkellanfl 190
                 +++++s GP++  +a        + + +a + lP+lG+C G q la +fG++v +  k  +Gk  +i +  a+    +f+  Pd ++    h   +   + ++ +   a +++  e ++i + ++ + G+qfhPe   s lGk++l+nf 
  MMETSP1061-20121228|8777_1  63 VAVILSGGPSSVYDADAPHvsEGVWKLIAERnLPVLGICYGMQELAHVFGGEVQKGLKHEYGK--SIVKRVAGCKSQIFDgmPDEFQMWMSHGDKL--TRTPDGFAPVAGTDNA-EFVTIENLEKRMWGLQFHPEVTHSPLGKNILENFC 207
                 457888899877665444322456676666538********************9995555555..5666666666777766688888877776554..3445555555555555.79*******************************95 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.0   5.4e-16   1.5e-13     518     704 ..      20     206 ..       2     218 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 5.4e-16
   TIGR01815 518 rillvdhedsfvhtlanylrqtGasvttlrhsvaeelldeerpdlvvlspGpGrpkdfd...vketika.alardlpvfGvclGlqglveafGGeldvlaepvhGkasrirvlepd.vlfaglpeeltvGryhslfarsdrlpkelkvtaesedgvimaiehrklpvaavqfhpesiltlaGeaGlalienv 704
                 +i ++d    + h +a  +r+          +v  e l ++    v+ls Gp    d d   v e + +    r+lpv+G+c G+q l+  fGGe+++  +  +Gk+   rv + +  +f+g+p+e+ +   h    +  r p  +   a +++   ++ie  ++ +  +qfhpe   +     G  ++en 
  MMETSP1061-20121228|8777_1  20 QIAILDFGSQYSHLIARRVRELNVYCELYSCQVPAEQLGKHELVAVILSGGPSSVYDADaphVSEGVWKlIAERNLPVLGICYGMQELAHVFGGEVQKGLKHEYGKSIVKRVAGCKsQIFDGMPDEFQMWMSHG--DKLTRTPDGFAPVAGTDNAEFVTIENLEKRMWGLQFHPEVTHSP---LGKNILENF 206
                 677888888999999999999998888888888899999999999********999887334566675515579**********************************9999998879*********9977665..788999*********************************76553...444555555 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0     1e-13   2.8e-11      55     201 ..      63     207 ..      48     230 .. 0.84

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 1e-13
   TIGR01823  55 daivvGPGPGdPnvakdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGq..vsevktsdaaifegvss.vkstryhsLyankesidsllalilledeedqilmsvkakkkPifGvqyhPesvksekesvkllknfl 201
                  a+++  GP     a+   + + v++l +  ++PvlGiC G+q l+   G ++++     +G+  v++v   +++if+g+ + ++    h       ++d + ++  +  ++ +  +++++ +k ++G+q+hPe   s ++   +l+nf 
  MMETSP1061-20121228|8777_1  63 VAVILSGGPSSVYDADAPHVSEGVWKLIAERNLPVLGICYGMQELAHVFGGEVQKGLKHEYGKsiVKRVAGCKSQIFDGMPDeFQMWMSHGDKLT-RTPDGFAPV--AGTDNAE-FVTIENLEKRMWGLQFHPEVTHSPLG-KNILENFC 207
                 499999******99**************9*************************9877777876699*************986888888876655.456773443..3344444.4578999999***************7.99999995 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.2e-11   3.2e-09     174     269 ..      17     117 ..       2     129 .. 0.85
   2 ?    2.9   0.0     0.035       9.6     325     349 ..     177     201 ..     167     211 .. 0.77
   3 ?   -2.8   0.0       1.8     5e+02     294     321 ..     263     290 ..     256     296 .. 0.83

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.2e-11
   TIGR01368 174 kklrvvvidlGvKen..ilreLvkrgvevtvvpadtsaeeikklnpdgillsnGPGdP..aaveeaietvkkllea.kiPifGIclGhqllalalgaktyk 269
                 ++ +++++d+G   +  i r++ + +v  ++++ +++ae++ k +  +++ls GP     a++ ++ e v+kl+ + ++P++GIc G q la  +g+++ k
  MMETSP1061-20121228|8777_1  17 NRPQIAILDFGSQYShlIARRVRELNVYCELYSCQVPAEQLGKHELVAVILSGGPSSVydADAPHVSEGVWKLIAErNLPVLGICYGMQELAHVFGGEVQK 117
                 4468*******98763377999999999***************************99744677889999**9987769******************99876 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.035
   TIGR01368 325 lehkelpvfsvQyHPeaspGphdte 349
                 +e+ e+++  +Q+HPe +  p   +
  MMETSP1061-20121228|8777_1 177 IENLEKRMWGLQFHPEVTHSPLGKN 201
                 677788999*******998887554 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 1.8
   TIGR01368 294 qNHgyavdeeslkeeelevthvnlnDgt 321
                 + H + vd+  l+++e++ + + + D+ 
  MMETSP1061-20121228|8777_1 263 RFHAFMVDNGCLRKDEAKNCLKRMRDEC 290
                 669************9999999888875 PP

>> TIGR00552  nadE: NAD+ synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   3.8e-07    0.0001      11      68 ..     225     280 ..     217     319 .. 0.73
   2 ?    3.5   0.0     0.027       7.3     156     185 ..     386     415 ..     384     417 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.8e-07
   TIGR00552  11 dflkekvkksgakgvvlGlSGGiDSavvaalavealgkeevlalilpesnqaseqdvq 68 
                 +f++e  k+ g   v+  +SGG+DS+v a+l  +a+g ++++a ++ ++   ++ +++
  MMETSP1061-20121228|8777_1 225 EFIEEVRKQVGDGHVIGAVSGGVDSTVAAVLMTQAIG-DRFHAFMVDNGCLRKD-EAK 280
                 5776655555666666669******************.7****99988766444.333 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.027
   TIGR00552 156 laplaellKtqvkeLakelnvPeeiiekaP 185
                 ++p+ el+K +v+eL  ++++ e+ + ++P
  MMETSP1061-20121228|8777_1 386 IEPMRELFKDEVRELGMAMGIDEKSVWRHP 415
                 78******************9887666666 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     4e-06    0.0011      66     196 ..      89     207 ..      78     209 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4e-06
   TIGR01855  66 kvvkkkkpvlgiClGmQllfek.seEgkevkglglikgkvkkleaekkvPhiGWnevevvkesellkgleeearvYfvHsYaveleeeeavlakadygekfvaave.kdnivgvQFHPEkSgk.tGlkllknfl 196
                  +++++ pvlgiC GmQ l++  + E   +kgl +  gk     +++              +s+++ g+ +e +++  H  +++ + +  +  + + +++fv++ + ++++ g+QFHPE  ++  G+++l+nf+
  MMETSP1061-20121228|8777_1  89 LIAERNLPVLGICYGMQELAHVfGGE--VQKGLKHEYGKSI--VKRV-----------AGCKSQIFDGMPDEFQMWMSHGDKLTRTPDGFAPVAGTDNAEFVTIENlEKRMWGLQFHPEVTHSpLGKNILENFC 207
                 56677889999999999876541333..3466665555432..2222...........2245789*****************999998888777777888888776367899*******987548*******96 PP

>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.5e-06   0.00042     233     314 ..     218     298 ..     181     316 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.5e-06
   TIGR01536 233 lveelrelledavkkrlvadvpvgvllSGGlDSslvaaiakkeaksevktFsigfe.dskdldeskaarkvadelgtehkevl 314
                 ++++  + +++ v+k+ v+d  v   +SGG+DS++ a+++ + +  +++ F ++     kd ++++  +++ de+ ++++ v 
  MMETSP1061-20121228|8777_1 218 VMADYAKEFIEEVRKQ-VGDGHVIGAVSGGVDSTVAAVLMTQAIGDRFHAFMVDNGcLRKD-EAKNCLKRMRDECHVNLRVVD 298
                 5566677788889988.899999999***************************98843333.335788888888888777665 PP

>> TIGR00268  TIGR00268: TIGR00268 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   2.1e-05    0.0058      14     122 ..     238     357 ..     222     463 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.1e-05
   TIGR00268  14 kvliaysGGvdssllaavlsdaglevlaitvvspslsp.reledakk.iakeigvkhelvki.dklapefk..enveerCyfCkkkllealvkeaekrg......ydvvldGtnaddled 122
                 +v+ a sGGvds++ a+++++a+ +    ++v    +   e ++  k    e  v++++v+  d++ ++ k  + +e++  +   ++++++++e  k +       +++l+Gt + d+ +
  MMETSP1061-20121228|8777_1 238 HVIGAVSGGVDSTVAAVLMTQAIGDRFHAFMVDNGCLRkDEAKNCLKrMRDECHVNLRVVDAsDRFLDKLKgvTEPEKKRKIIGTTFIDIFQEESAKIEaelgvkCEYLLQGTLYPDVIE 357
                 6889***************99888877666665544443888887551567899999999752455555542124455556666777777777765543111111356666776666654 PP

>> TIGR00032  argG: argininosuccinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.1e-05    0.0057       4      67 ..     241     306 ..     238     338 .. 0.89
   2 ?   -2.9   0.0       2.5   6.9e+02     133     164 ..     381     410 ..     376     416 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.1e-05
   TIGR00032   4 laysGGlDtsvalklleek.gaeviavtvdvGqp.eedldaieekalklGaekayviDareefvkd 67 
                  a sGG+D +va  l+++  g +  a++vd G   +++ ++  ++      ++ +v+Da + f ++
  MMETSP1061-20121228|8777_1 241 GAVSGGVDSTVAAVLMTQAiGDRFHAFMVDNGCLrKDEAKNCLKRMRDECHVNLRVVDASDRFLDK 306
                 589****************9************987888999999999999*********9999876 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 2.5
   TIGR00032 133 pdlkviaPvreleliReeeieyaaekGievpv 164
                  +lk+i+P+re  l++ e  e   + Gi+ ++
  MMETSP1061-20121228|8777_1 381 MHLKLIEPMRE--LFKDEVRELGMAMGIDEKS 410
                 68999***996..6889999999999998765 PP

>> TIGR00342  TIGR00342: thiamine biosynthesis/tRNA modification protein ThiI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.8e-05    0.0076     172     236 ..     236     295 ..     234     348 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.8e-05
   TIGR00342 172 qgkvlaLlSgGiDSpVaaflvmkR.Gcrvvavhfknepaasekakekveklaekslaelevsvklv 236
                  g+v+  +SgG+DS Vaa l+ +  G r +a +++n   ++++ak+ ++++ ++      ++v+l+
  MMETSP1061-20121228|8777_1 236 DGHVIGAVSGGVDSTVAAVLMTQAiGDRFHAFMVDNGCLRKDEAKNCLKRMRDE------CHVNLR 295
                 5889999*************9995599**********99999999999998885......333333 PP

>> TIGR00420  trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.6e-05     0.026       3      47 ..     239     283 ..     237     307 .. 0.70
   2 ?   -3.8   0.0       3.6   9.8e+02     163     182 ..     385     404 ..     383     408 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.6e-05
   TIGR00420   3 vivglsgGvDssvsalllkkqgyevkgvylklweedekeddleCs 47 
                 vi ++sgGvDs+v+a+l+++   +    ++      +k + ++C 
  MMETSP1061-20121228|8777_1 239 VIGAVSGGVDSTVAAVLMTQAIGDRFHAFMVDNGCLRKDEAKNCL 283
                 78899*************998776666666433333333334454 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 3.6
   TIGR00420 163 llfPlgellKkevrqlAkea 182
                 l+ P+ el K evr+l  ++
  MMETSP1061-20121228|8777_1 385 LIEPMRELFKDEVRELGMAM 404
                 677999********997665 PP

>> TIGR03573  WbuX: N-acetyl sugar amidotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00018     0.049      47     114 ..     224     291 ..     205     306 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00018
   TIGR03573  47 eelvekikkkgeskYDciigvSGGkDstyqahvlkkklGlnpLlvtvdpglntelgvkN.lenlikklg 114
                 +e +e+++k+ +    +i +vSGG+Dst +a ++ +  G +  ++ vd+g  ++  +kN l+++  ++ 
  MMETSP1061-20121228|8777_1 224 KEFIEEVRKQVGD-GHVIGAVSGGVDSTVAAVLMTQAIGDRFHAFMVDNGCLRKDEAKNcLKRMRDECH 291
                 4567777777664.457889********************99999999998866555552666666444 PP

>> TIGR02432  lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00025     0.068       3      84 ..     240     317 ..     238     406 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00025
   TIGR02432   3 lvAvSGGvDSmaLlkllkelkeklkikliaahvdHklreeskeeaeeveelckklkiklvvkkvevkakakekkknleeaaR 84 
                 + AvSGGvDS++   l+++    +  +++a++vd +   +++e ++ ++++ ++ +++l v + + +  +k k  +  e+ R
  MMETSP1061-20121228|8777_1 240 IGAVSGGVDSTVAAVLMTQ---AIGDRFHAFMVDNGCL-RKDEAKNCLKRMRDECHVNLRVVDASDRFLDKLKGVTEPEKKR 317
                 559*********9999975...5666799999998765.4555666677777777777776665544444444445555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (538 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 2151.82
//
Query:       MMETSP1061-20121228|8785_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   11.4   3.2       0.38    8.0   0.0    2.1  2  TIGR01353 dGTP_triPase: putative dGTPase


Domain annotation for each model (and alignments):
>> TIGR01353  dGTP_triPase: putative dGTPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   1.2    0.0034        14     210     296 ..      16      99 ..      14     129 .. 0.49
   2 ?    8.0   0.0   9.2e-05      0.38     257     337 ..     207     287 ..     171     301 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0034
   TIGR01353 210 hDLeDalklglltleelvelleiaakleelgseileqskeeedeqvaklrekllkklvesaaqefssvlvailagtlehelleesee 296
                 h LeD +++  ++ e l++l  ++++ + +   +++++++++     +  ek  kk+++ +++  +++ +++  + ++++ l  se+
  MMETSP1061-20121228|8785_1  16 HKLEDTMEVEDVSTEGLQNLSVADNEKKMM--DSTDEDEKSDL-ITPSSVEKKRKKATAGKKESSHKNVKDEDYKLVKKKKLRVSEA 99 
                 779999999999988888877776644443..33333333333.2222333333333333333333333333333333333333322 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 9.2e-05
   TIGR01353 257 klrekllkklvesaaqefssvlvailagtlehelleeseelaealealkkflvkavfkhkrverlelkgervitdLleall 337
                 +  +k   k++e++ ++f++ l+ + +g   ++++e+++++ ++l+  k + +k+++     +++++ g++ i+++l++l 
  MMETSP1061-20121228|8785_1 207 EEISKDPAKVMEQRLHQFLDRLSSNPKGGAGEKIVEAAKQVWRKLSDGKAYSRKQLVAVTSYKATNSSGFEAIMKVLNELK 287
                 5555556789999999************************************************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1500.76
//
Query:       MMETSP1061-20121228|8789_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.24
# Mc/sec: 3294.23
//
Query:       MMETSP1061-20121228|8788_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1627.87
//
Query:       MMETSP1061-20121228|8791_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 749.51
//
Query:       MMETSP1061-20121228|8794_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 359.56
//
Query:       MMETSP1061-20121228|8792_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   13.1   0.0      0.014   13.1   0.0    2.2  2  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA


Domain annotation for each model (and alignments):
>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   2.0         1   4.1e+03      17      36 ..     109     128 ..     105     138 .. 0.64
   2 ?   13.1   0.0   3.5e-06     0.014     105     146 ..     264     305 ..     256     310 .. 0.86

  Alignments for each domain:
  == domain 1    score: -5.4 bits;  conditional E-value: 1
   TIGR03927  17 aaenngkldvkpnryekkdi 36 
                 + ++n++ + ++n++e  + 
  MMETSP1061-20121228|8792_1 109 YDNDNDNGNDNDNEIEIENH 128
                 56777888888887775554 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 3.5e-06
   TIGR03927 105 eqtssssesteeeetektssilllvliaglillliagiyfli 146
                  ++sss  ++e+++  +++s +l  l+++l++++i+++ +l 
  MMETSP1061-20121228|8792_1 264 RSFSSSAANEENKSHRNRKSCILVCLLIFLLVAGILVTGILL 305
                 45677777777**************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2890.56
//
Query:       MMETSP1061-20121228|8799_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.26
# Mc/sec: 187.83
//
Query:       MMETSP1061-20121228|8798_1  [L=829]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 3218.20
//
Query:       MMETSP1061-20121228|8800_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-11   39.5   1.0    3.4e-05   19.5   0.0    3.0  3  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      6e-09   32.5   0.0    4.5e-07   26.3   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.4e-08   31.5   0.0    1.2e-05   21.8   0.0    2.3  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    4.5e-07   26.8   0.0     0.0056   13.3   0.0    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    2.2e-05   21.2   0.0    0.00051   16.7   0.0    2.3  2  TIGR00643 recG: ATP-dependent DNA helicase RecG


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.2e-08   3.4e-05      16      86 ..     164     238 ..     158     247 .. 0.89
   2 ?    0.4   0.1     0.026        21     135     186 ..     328     378 ..     321     406 .. 0.79
   3 !   16.0   0.0   4.8e-07    0.0004     279     350 ..     549     619 ..     496     632 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.2e-08
   TIGR04121  16 afQkevleaaeegesglliapTGaGKTlavflpsliela....akekpkkglkvlyitPLkaLakdieraleapi 86 
                 + Q  + eaa +g+s l    TG+GKTla  lp++ +l+       +p +++  + ++P + La +i+   e  i
  MMETSP1061-20121228|8800_1 164 RVQALTYEAALDGRSILARSGTGTGKTLAFLLPTIERLLdvdlDLYQPGRSIGCIILAPTRELAIQIADQAEILI 238
                 6688899*****************************9998877677888*****************998877655 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.026
   TIGR04121 135 eklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgn 186
                 ++++++ ++vv+DE   Ll++   + ++  L+ ++r++++ +++  sAT+  
  MMETSP1061-20121228|8800_1 328 ADVVAETKIVVLDETDRLLQKSNQHETQRILSFMARVEKR-QTLLFSATIPR 378
                 66788999*************9999999999999999876.78889999953 PP

  == domain 3    score: 16.0 bits;  conditional E-value: 4.8e-07
   TIGR04121 279 ialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldep 350
                 i   H+ ++++ R++  +a+++ +  ++ +      G+D+ dv lv+q+G+p      + RiGR++ + ++ 
  MMETSP1061-20121228|8800_1 549 IWEIHSRMSQSSRSRASSAFRNARNGILFSSDVSARGLDYPDVSLVVQMGAPSTDQDYIHRIGRTGRA-GQV 619
                 555689999999999999999999888888888889****************************9854.333 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   5.5e-10   4.5e-07      21     106 ..     145     242 ..     137     265 .. 0.83
   2 !    3.8   0.0    0.0035       2.8     342     381 ..     585     626 ..     568     631 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 5.5e-10
   TIGR03817  21 vepdvvaalea.aGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed........pratalylaPtkala...adqlravkelee 106
                 ++pd ++ale+  G++a  + qa + e+a +G+++    gt +Gk+la+llP +++l +         +    + laPt+ la   adq   + e+++
  MMETSP1061-20121228|8800_1 145 IHPDTRKALEEgFGLQAMTRVQALTYEAALDGRSILARSGTGTGKTLAFLLPTIERLLDVdldlyqpgRSIGCIILAPTRELAiqiADQAEILIEFHN 242
                 7899999998736********************************************998677877554667899*******9444577666666655 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0035
   TIGR03817 342 GvdisGldavviaGfPGtvaslwqqaGraGrrgq..dalvvl 381
                 G+d   +  vv  G P t   +  ++Gr+Gr+gq  ++l vl
  MMETSP1061-20121228|8800_1 585 GLDYPDVSLVVQMGAPSTDQDYIHRIGRTGRAGQvgRSLLVL 626
                 7788888899***********************943455555 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00038      0.31       2      50 ..     150     198 ..     149     203 .. 0.94
   2 !   21.8   0.0   1.5e-08   1.2e-05     249     333 ..     547     631 ..     539     663 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00038
   TIGR01389   2 kqvLkevFGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaL 50 
                 ++ L+e FG +   + q+   e+ ldgr++la   tG Gk l + +P++
  MMETSP1061-20121228|8800_1 150 RKALEEGFGLQAMTRVQALTYEAALDGRSILARSGTGTGKTLAFLLPTI 198
                 57899***************************************99986 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 1.5e-08
   TIGR01389 249 iealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDl 333
                  +    h+ +s++ R++a  +F ++++ ++ +      G+d +dv  v+ +  P     y    GR GR G+   ++l+  + + 
  MMETSP1061-20121228|8800_1 547 NNIWEIHSRMSQSSRSRASSAFRNARNGILFSSDVSARGLDYPDVSLVVQMGAPSTDQDYIHRIGRTGRAGQVGRSLLVLLPFER 631
                 556678******************************************************************9999987655444 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   2.9e-05     0.024       2      48 ..     152     198 ..     151     201 .. 0.94
   2 !   13.3   0.0   6.8e-06    0.0056     257     335 ..     553     631 ..     541     763 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.9e-05
   TIGR00614   2 ilkkvfglesfrpvqlevinavlegrdalvvmatGgGksLCyqlpav 48 
                  l++ fgl+    vq  + +a+l gr  l    tG Gk L + lp++
  MMETSP1061-20121228|8800_1 152 ALEEGFGLQAMTRVQALTYEAALDGRSILARSGTGTGKTLAFLLPTI 198
                 58899**************************************9986 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 6.8e-06
   TIGR00614 257 hagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDv 335
                 h+ +++s+r++    f +    ++ +      G++ pdv  v+ +++p     Y   +GR GR g   +++l   p + 
  MMETSP1061-20121228|8800_1 553 HSRMSQSSRSRASSAFRNARNGILFSSDVSARGLDYPDVSLVVQMGAPSTDQDYIHRIGRTGRAGQVGRSLLVLLPFER 631
                 88999999999999998777777888777889*********************************99988876555443 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.022        18     286     325 ..     216     263 ..     182     285 .. 0.71
   2 !   16.7   0.0   6.2e-07   0.00051     486     568 ..     550     631 ..     540     643 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.022
   TIGR00643 286 qvalmaPTeiLAeQhyeklrellepl........gievalLtgslkkk 325
                  + ++aPT  LA Q +++++ l+e          +++va + g +k +
  MMETSP1061-20121228|8800_1 216 GCIILAPTRELAIQIADQAEILIEFHnrnrrgnrQLSVACIYGGVKMQ 263
                 4789**************988877557778887766666666666554 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 6.2e-07
   TIGR00643 486 allhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLvaepkse 568
                   +h+r+++  + ++ ++Fr+ +  iL +  v   G+d P+++++v + a       +H + GR gR  + +  lLv  p ++
  MMETSP1061-20121228|8800_1 550 WEIHSRMSQSSRSRASSAFRNARNGILFSSDVSARGLDYPDVSLVVQMGAPSTDQDYIHRI-GRTGRAGQVGRSLLVLLPFER 631
                 558********************************************************99.9*****999999998744333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.42
# Mc/sec: 2523.51
//
Query:       MMETSP1061-20121228|8804_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    4.1  12.6      0.083    9.5   4.4    1.4  2  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.3      0.11   4.6e+02     231     243 ..      13      25 ..       7      32 .. 0.38
   2 ?    9.5   4.4     2e-05     0.083     213     287 ..      57     131 ..      41     141 .] 0.83

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.11
   TIGR02927 231 epkaekkeepkpe 243
                 + +a+ +++p+p+
  MMETSP1061-20121228|8804_1  13 QAQAQVQPQPQPQ 25 
                 2222222222222 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 2e-05
   TIGR02927 213 eekpekseakseekpeaaepkaekkeepkpepkaeekapaakaatektaadsspyvtplvrklakekGvdlssvk 287
                 +   +k +ak + k ++ + +  + +++  ++++ + + aakaa ++ aa+++p  +p+ rk  ++k   l+ + 
  MMETSP1061-20121228|8804_1  57 DTDRAKRQAKEASKNKVNNREGTPAQRNSEDAAKLQAKLAAKAAKKEDAANATPSKAPVTRKKVAKKTETLDDLL 131
                 45567999999999999999999999999999999999***********************98888876666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 744.42
//
Query:       MMETSP1061-20121228|8803_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1973.55
//
Query:       MMETSP1061-20121228|8806_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 372.40
//
Query:       MMETSP1061-20121228|8805_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   11.0   0.0      0.049   10.6   0.0    1.1  1  TIGR00902 2A0127: MFS transporter, phenyl propionate permease (PPP) family
      0.046   10.0   0.0      0.066    9.5   0.0    1.1  1  TIGR01677 pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase


Domain annotation for each model (and alignments):
>> TIGR00902  2A0127: MFS transporter, phenyl propionate permease (PPP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.4e-05     0.049     180     219 ..     153     192 ..     146     197 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.4e-05
   TIGR00902 180 tiqpkdeiredevqndvaflallknpqtlrvliavgllqG 219
                  i+pk+  +  e+++  + +allknp+ l +li+vg++ G
  MMETSP1061-20121228|8805_1 153 VINPKGTYQYFETKKGFSIFALLKNPMVLMMLISVGMMVG 192
                 5899**9999999999999*****************9987 PP

>> TIGR01677  pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   3.2e-05     0.066     492     519 ..     211     238 ..     202     244 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 3.2e-05
   TIGR01677 492 kvkdkldpkglfssewsdeilgieekas 519
                 ++k++ dp  +fs  w d+  g+ee+as
  MMETSP1061-20121228|8805_1 211 QMKNQQDPTAMFSQMWGDMTGGGEEEAS 238
                 78******************99999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 1517.87
//
Query:       MMETSP1061-20121228|8808_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 798.22
//
Query:       MMETSP1061-20121228|8810_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 533.96
//
Query:       MMETSP1061-20121228|8807_1  [L=745]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-37  126.5   0.1    4.6e-37  125.6   0.0    1.3  1  TIGR00417 speE: spermidine synthase
    4.8e-25   85.9   0.0    1.2e-24   84.6   0.0    1.7  1  TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.6   0.0   2.3e-40   4.6e-37      40     186 ..     280     442 ..     272     466 .. 0.90

  Alignments for each domain:
  == domain 1    score: 125.6 bits;  conditional E-value: 2.3e-40
   TIGR00417  40 kvlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpkls.ga.........lddervdlkidDGvkflrdt...ekkfDviivDstdPvGp...aetlfekefyelvkkalnedGvivaqs 186
                 ++l+lDg++q        yhe ++h  +++h +pk+v+++GG +G++l+ev+khk+v+++t+veiD++ i+++k y+p +s ++         +dde+++l+++D + +  +    e+kfDv+ivD+ +P+     ++ l++ e+ e +  +l++dG++v q 
  MMETSP1061-20121228|8807_1 280 RMLFLDGTLQSESSSQKEYHEALVHAGMFSHADPKRVAIVGGAEGATLKEVLKHKTVDSVTMVEIDDELIDIAKTYMPFMSdCSdlvgrskncFDDEHLNLVLEDAKGWFTERkaeEEKFDVVIVDAMEPEASsaiSKDLYDTEHLEAILASLTDDGIMVIQI 442
                 89****************************************************************************9876644555555569*************99988766789************975222689**********************95 PP

>> TIGR03330  SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.6   0.0     6e-28   1.2e-24       3      85 ..      77     159 ..      75     176 .. 0.94

  Alignments for each domain:
  == domain 1    score: 84.6 bits;  conditional E-value: 6e-28
   TIGR03330   3 lGkhllvdlygvdeekledeelieevlleaakaagatlvevafhkfspqGvsgvvvlaESHisiHTwpEkgyaavDvftCgdt 85 
                 +G+hllvd+ g+++  l+ ee++ +++++++++ag+t+++ + hk+ p+Gvs v vl ESHis HTwp++g +++D+ftCg++
  MMETSP1061-20121228|8807_1  77 AGQHLLVDIKGIEAAFLDSEERLAKAMVDTVNHAGLTMLSYHCHKLIPKGVSCVGVLLESHISFHTWPDEGVITLDLFTCGNN 159
                 7********************************************************************************93 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.23s 00:00:00.54 Elapsed: 00:00:00.31
# Mc/sec: 3172.00
//
Query:       MMETSP1061-20121228|8813_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1148.31
//
Query:       MMETSP1061-20121228|8811_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 2192.72
//
Query:       MMETSP1061-20121228|8816_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 590.81
//
Query:       MMETSP1061-20121228|8814_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   14.4   0.5       0.36    7.2   0.0    2.2  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
  ------ inclusion threshold ------
      0.015   12.7   3.4       0.02   12.3   0.2    2.3  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.5   0.0   0.00059       1.2     126     160 ..     214     248 ..     173     272 .. 0.83
   2 !    7.2   0.0   0.00017      0.36     348     396 ..     426     474 ..     398     505 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.00059
   TIGR00990 126 yaaklkekGnkayrnkdfdkaielyskalllkedP 160
                   +k k kGn + ++ + + ai  y+ al + ed 
  MMETSP1061-20121228|8814_1 214 ECLKWKYKGNTFLESGEIQSAIGAYNEALSICEDY 248
                 46899************************998884 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00017
   TIGR00990 348 eealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkds 396
                 ++a  d  k+ e+ P+ + ++++ a i  +l + ++ +++++kal  d+
  MMETSP1061-20121228|8814_1 426 LQAARDSLKATEVLPNYSTAWLRAAEILSDLWKIKESKQYYEKALSVDA 474
                 5677788899999999999999999999999999999999999998876 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1     0.045        92      38      69 ..     222     253 ..     219     292 .. 0.77
   2 ?   12.3   0.2   9.8e-06      0.02      46      95 ..     424     473 ..     410     480 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.045
   TIGR02521  38 aleYleqgdlekAkenlekAleldpkdadanl 69 
                 + ++le+g++++A  + ++Al +  ++a a++
  MMETSP1061-20121228|8814_1 222 GNTFLESGEIQSAIGAYNEALSICEDYAIAQS 253
                 56778888888888888888888777777665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 9.8e-06
   TIGR02521  46 dlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlk 95 
                  l +A ++  kA e+ p+++ a+l  A ++ +l + ++ +++++kAl+++
  MMETSP1061-20121228|8814_1 424 SLLQAARDSLKATEVLPNYSTAWLRAAEILSDLWKIKESKQYYEKALSVD 473
                 55577777779************************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 2196.98
//
Query:       MMETSP1061-20121228|8822_1  [L=505]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (505 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2221.82
//
Query:       MMETSP1061-20121228|8820_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    6.1  11.4        2.1    5.7   7.9    1.3  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
        2.7    4.1   6.7        3.4    3.8   4.7    1.4  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.9     0.001       2.1      86     132 ..       5      58 ..       1     130 [. 0.55

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.001
   TIGR03789  86 aqseiakqeqqlvaltekqqaleqlea.......eyqqaqkeletlqqeqeqll 132
                 +q+e+++++qq ++ +++q++ +q ++       + ++a  e + +qq+q+q++
  MMETSP1061-20121228|8820_1   5 QQQEQQQEQQQEQQHQHQQHECQQHQTrisrrwyHLSHAISEQKCQQQQQQQQQ 58 
                 333333333333333333333333333333443333322222222222222222 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   4.7    0.0017       3.4     324     375 ..       5      58 ..       1     143 [. 0.60

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0017
   TIGR02442 324 kkleekkeeakpdeekedeseekekeeskkqe..eeepgkddekeedekeeaee 375
                 +++e+++e++++++++++++e ++++++ +++  + +    ++k +++++++++
  MMETSP1061-20121228|8820_1   5 QQQEQQQEQQQEQQHQHQQHECQQHQTRISRRwyHLSHAISEQKCQQQQQQQQQ 58 
                 222222222222222222222222222222223322222223222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       462  (0.112628); expected 82.0 (0.02)
Passed bias filter:                      281  (0.0685032); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.43
# Mc/sec: 752.03
//
Query:       MMETSP1061-20121228|8821_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2875.48
//
Query:       MMETSP1061-20121228|8818_1  [L=1572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.5e-256  849.7   0.0   4.4e-255  846.7   0.0    2.0  1  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
    3.2e-61  205.0  16.4    1.2e-16   58.0   0.1    7.4  6  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    5.5e-32  108.6  13.7    5.8e-11   39.1   0.1    6.1  6  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    7.6e-26   88.0   3.4      2e-08   30.4   0.1    4.1  3  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    2.2e-25   87.4   3.5    1.1e-08   32.3   0.1    4.3  4  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    3.7e-22   75.7   7.1    3.4e-10   36.2   0.1    4.4  4  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
    6.2e-22   74.8   4.9    8.5e-09   31.4   0.0    3.8  4  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    5.7e-20   69.5   3.9    1.6e-06   25.1   0.0    4.2  4  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    5.2e-18   62.4  17.9    4.4e-06   22.9   0.2    5.0  5  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
    8.4e-18   62.1   6.3    0.00017   18.3   0.0    4.3  4  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    2.6e-16   56.7   2.9      3e-06   23.4   0.0    3.3  3  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    8.7e-15   51.4   1.0    3.1e-06   23.1   0.0    3.2  3  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    1.8e-14   50.6   2.0     0.0003   16.8   0.0    4.3  4  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    2.4e-13   46.5   2.6    7.6e-12   41.6   0.4    3.4  3  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase


Domain annotation for each model (and alignments):
>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  846.7   0.0  1.5e-257  4.4e-255      11    1047 ..     140    1461 ..     131    1471 .. 0.89

  Alignments for each domain:
  == domain 1    score: 846.7 bits;  conditional E-value: 1.5e-257
   TIGR01657   11 tspvkllivlvvlvltlglvlLlltwkpklkvkltlvkvskedeetvvivte..........................tklslsdeivelsrkslskdleles..aveaseeeiffefkkqkksyeekeqkifskleelvkeksegdylkaagesnGLtkgeiakrkelyGkneieikvksfleLlveevlkPfyvfqvfsvilWlldeyyyyallilvlsvlsivlsvkeirkqlkelrdmvaksqsveViRekkeetiasdelvpgDivlisrl............................eekllpcDavLlegscivnEsmltGEsvpvlKvpieeeedsdeklqlkekskkhvLfgGTkvlqirpdeg...................dtkvlaiVvrTGFstskGqLvrsilypkprvfkfykdslkfilflavlaligfiyvlielikne.rskkklilrsldiitivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnaeeflkevteds......sekksetlkalatchsltkledklvGDpldlkmleavgwtlee.......edesaleesilavvr.........tedktkelsiirrfeFssalkrmsvivkteeerkkellafvKGaPEtiaellsketvpsdykevlksytreGfRvlAlaskeLp.kltlskaqdlsRdavEsnleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekkktlilaeaeepe.kgksaqikfeskde............................kiastkveqpvkekkdslesllasryslalsGkalavllekskellkklllkvkVfARvaPeqKeelvetlkkldytvlmcGDGaNDcgALkqAdvGisLsea........................................................................................................................................................................................eAsvaapFtSklasiscVtnvireGRaaLvtslqvFkylalysliqflsvliLylkgsklgdgQfltidllliavvalllsrskplkkLskerpssnllsvylllsvllqfvlvilslvllvfevkkqpwykeeevvelekenakslentvvfivslfqylivaivnskGkpfreplyknkpfvvsllvllaillvllleesselnellklvllpqe 1047
                  t+ + + ++l++l ++++lvlL+ +w++ + v ++++++   + e    ++e                          +  +   +  +++ + +  + +      ++  +  + fe+++ +++y+  + + +sk+   +   +     + +g     ++ ++ + +  yG n +++k+++f+eL + + l Pf vfq+f+vilW+ldey+ y+ ++l+++++++++ v+++ k+l+ lr m++++  v V+R + ++ ++++el+pgDi++++r                              + l+p+D++Ll+gs +vnE++ltGEsvp++K+ + e  ++ e+l++k k+k +v ++GTk+lq + + +                   d +++  V+rTGFs+++G+Lvr i  +++ v+  +k++ +++l+l  +a+ ++ yvl ++++ + rsk +l+l++++iit+v+PP+LP++++++vn++l  L k +ifc+eP r++iaGk+d + FDKTGTLT d+l+  gv + s+ +    +++eds       +++ e +++l+ chsl+++e++  GDpl+ + l+++ w+l +               + +   r         +e++  +++++ r +Fss+l+rms ++k  +  +  ++   KG+PE++  ll     p+ y+     +++eG+Rv+A+a k+L  + ++s+aqd sR + E ++ f+G++ + +++++dt++v+  Lke  + + m+tGD llTa++Va+ev+i+e+  +   +    +e +++ +++  ++                               +  + ++ + v + + s   +l ++ +la +Gk+la+ le++ +  k +l + kVf R+ P+ Ke+++e l  ++ t lmcGDGaND+gALk AdvG++L+                                                                                                                                                                                          +As+aapFtSk++si+  ++++r+GR++Lv s+q+++++al +li+ +s+++Lyl+g+k+gd Q +t  ++l ++ ++++srskpl +Ls+ rp ++++  +l+ s+l+qf+++++++++ v  +kk+ +  +    +l+ ++++ + ntvvf+vs++q+++v++vn +G+pf+  l +n p+++sl+   ++  + ++e+ ++ln+ ++lv+ p+e
  MMETSP1061-20121228|8818_1  140 TEFTPT-LILGILAVLHALVLLMQYWSVAFLVLINYREIDADATELPESMMEldleedeakliawkktakkknedmmdRAIANIPSNLPTHARIVPAKGRHVLvpLEYYPTLGMTFEYHRRRYVYDPDSSE-WSKIRCGTTFGK-DFLATWKGFD---SDMHLVSGEIRYGPNAFSVKQPTFIELYKAQLLSPFTVFQIFCVILWMLDEYWQYSFFTLFMVLTFEATVVFSRIKSLSALRGMGNQPRLVLVYRLGSWTSVETTELLPGDIMSLTRIkphfassnnsvadgdkkkkvvskkvedeGGDLIPADLLLLRGSTVVNEASLTGESVPQMKEGLSE-MEDGEHLSMKGKNKMNVAYAGTKMLQCKGAAElesqvgetksftpvipnppDNGCVCFVLRTGFSSQQGKLVRMIEGSQEKVKGHEKETGLLLLLLFFFAVTSSGYVLYHGLQSDkRSKFELLLHCILIITSVIPPELPMQMALAVNNSLMTLMKLHIFCTEPYRVPIAGKLDACLFDKTGTLTTDELVAVGVCQPSKLQIPKGKEDEDSkfltpmIQIHDEAAMVLSGCHSLVHIEGETTGDPLESAPLKSMRWELSKesgnaipS-------KAT-EKRpegkpinvfSEKNITQIEVLTRHHFSSKLQRMSCVIKSVTSGQ--HYSVLKGSPEAVGRLLA--VKPKGYDDKAAYLSKEGYRVIAMALKPLAsQGQISEAQD-SRANCEKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNIIEPIGQKSDSDYLLTEqNEELKKLILKKR-GvvenakekkkkefkpillleqsngslywE--NYETGEKVGDFDASHIPTLSKDNDLATTGKSLALALESD-NVTKTVLGHFKVFSRMTPDAKETVIECLHSVGATCLMCGDGANDVGALKGADVGVALLTGfgdinvdktdeksdkksekkepepqltaimsqdqlnqlralpvtllkmkirsigvdtdkypelvekedlvqlyqikvregalkrhqaknskdkknmtaaekaqeakrknkerqeqlirrtaeleakgvswasfkamkeilaeetaaarakkgivkgggveasaglmaqqfddmetgelpmvklgDASIAAPFTSKMPSIKSCVDIVRQGRCTLVSSIQMYQIMALQCLISSYSLSVLYLDGVKYGDTQ-MTAMGMLGSISFMSVSRSKPLDRLSSVRPLTSIFHPALFISLLGQFAIHLTTMMIAVYYAKKNLP--PDYDADLDGQFKPGILNTVVFLVSNVQQVTVFVVNLQGRPFMTGLTENRPLLWSLVCTFILTFMFASESIPSLNKYFQLVPFPEE 1461
                  444444.4566778899**********************99999987777777789999999999999988877776632333333333444433333333320033444566789999999999999998.999999998885.2333334444...35667777788*********************************************************************************************************988899999*********9999999988766789********************************7.666677**********************9999999****************99*********************************************************99988799***************************************************************************9988888655566666677777668899999***********************************55555442.......433.22234455555355555*************************9977..889**************..77***************************7888999988.9***********************************************************8753333322222220222222222222.12444788999************9987542..44444445555557999***************9777766.9*******************************************************************************************************************************************************************************************************************************************************************************************************************.666778889999*********************************************99999988..555569*************************************************9999999999999*************9975 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00021      0.06       1      61 [.     349     407 ..     349     411 .. 0.89
   2 !   26.9   0.1   1.2e-09   3.4e-07      57      96 ..     433     472 ..     409     518 .. 0.74
   3 !   58.0   0.1   4.1e-19   1.2e-16     111     237 ..     541     672 ..     529     694 .. 0.76
   4 !   41.4   0.2   4.5e-14   1.3e-11     254     366 ..     765     906 ..     757     907 .. 0.78
   5 !   55.3   0.2   2.8e-18   8.2e-16     355     411 ..    1005    1061 ..    1002    1069 .. 0.93
   6 !   12.7   0.1   2.3e-05    0.0069     416     465 ..    1253    1302 ..    1244    1315 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00021
   TIGR01494   1 vililvllfallealakekaedalrslkdkelnskkvtvlr.egekeisskdlvvGDivlvk 61 
                 ++l++vl f++++++++ k+ +alr + +   +++ v v+r + ++++++++l +GDi++++
  MMETSP1061-20121228|8818_1 349 FTLFMVLTFEATVVFSRIKSLSALRGMGN---QPRLVLVYRlGSWTSVETTELLPGDIMSLT 407
                 589*************************9...7777777763569**************986 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 1.2e-09
   TIGR01494  57 ivlvkkgekvpaDgvllsgsaevdessLtGEsnpvekkea 96 
                  v  + g+ +paD++ll+gs++v+e+sLtGEs+p+ k+  
  MMETSP1061-20121228|8818_1 433 KVEDEGGDLIPADLLLLRGSTVVNEASLTGESVPQMKEGL 472
                 55556799***************************99743 PP

  == domain 3    score: 58.0 bits;  conditional E-value: 4.1e-19
   TIGR01494 111 kvskiavvvktgsektplqrkldklalifllallllallvfllvliel..ktflkiilralillviaiPiaLpvavtialavgd...krlailvrslnaleelgkvdvilsDKTGTLTenkmelkkvvigge 237
                 +  k++++++ ++ek + ++k++ l l++l+++++     +l+   +   ++ ++++l+++++++++iP++Lp+ + +a++++     +l i+++++ ++  +gk+d++l+DKTGTLT++++  + v+  ++
  MMETSP1061-20121228|8818_1 541 QQGKLVRMIEGSQEKVKGHEKETGLLLLLLFFFAVTSSGYVLYHGLQSdkRSKFELLLHCILIITSVIPPELPMQMALAVNNSLmtlMKLHIFCTEPYRVPIAGKLDACLFDKTGTLTTDELVAVGVCQPSK 672
                 5567777888888877766666665544444444444444444333222246899************************987751116789*******************************9999887665 PP

  == domain 4    score: 41.4 bits;  conditional E-value: 4.5e-14
   TIGR01494 254 kilkvlefeserkrmsvivkkpkg....kyvkGapevilerv....kkleekleelaseglrtlava.....................skeellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglf 366
                 ++l++++f+s+ +rms+++k+ ++    +++kG+pe + + +    k +++k ++l++eg+r++a+a                     ++ +++G++a+ +++r+d+  ++  lk+ g+ + m+TGD   tA+++ake++++
  MMETSP1061-20121228|8818_1 765 EVLTRHHFSSKLQRMSCVIKSVTSgqhySVLKGSPEAVGRLLavkpKGYDDKAAYLSKEGYRVIAMAlkplasqgqiseaqdsranceKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNII 906
                 478999***********99876542222799******99987333346999**************9833333333333222222222234689**********************************************985 PP

  == domain 5    score: 55.3 bits;  conditional E-value: 2.8e-18
   TIGR01494  355 tAkaiakelglfarvsPeqKaeivellkkkgevvamiGDGvNDapALkaAdVGiais 411 
                   +k++  + ++f r++P+ K++++e l++ g++++m+GDG+ND++ALk AdVG+a+ 
  MMETSP1061-20121228|8818_1 1005 VTKTVLGHFKVFSRMTPDAKETVIECLHSVGATCLMCGDGANDVGALKGADVGVALL 1061
                  677888999**********************************************85 PP

  == domain 6    score: 12.7 bits;  conditional E-value: 2.3e-05
   TIGR01494  416 adivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsv 465 
                  a +    +++++ v+++++Gr+t+++++++++++++++li +++l+vl++
  MMETSP1061-20121228|8818_1 1253 APFTSKMPSIKSCVDIVRQGRCTLVSSIQMYQIMALQCLISSYSLSVLYL 1302
                  44444556778899********************************9987 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.8e-06   0.00054      13     119 ..     302     407 ..     298     412 .. 0.81
   2 !   18.9   0.1   2.6e-07   7.7e-05     119     199 ..     437     517 ..     415     523 .. 0.80
   3 !    8.7   0.0   0.00031     0.092     171     303 ..     531     663 ..     527     679 .. 0.77
   4 !   39.1   0.1     2e-13   5.8e-11     348     498 ..     759     925 ..     740     943 .. 0.85
   5 !   28.2   0.0   3.9e-10   1.1e-07     508     559 ..    1009    1060 ..     983    1066 .. 0.82
   6 ?    1.1   0.6      0.06        17     659     753 ..    1340    1442 ..    1260    1444 .. 0.60

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.8e-06
   TIGR01647  13 kyGpneleekkeskllkFlsflwnPlswvleiAaiiaialen.we.DfviilallllnatigfieeskAgnaveaLkkslapkakvlRdgkwqeleakelvpGDvvalk 119
                 +yGpn+++ k+ + +  +  +l++P++    i  +i  +l++ w+  f  + ++l   at+ f    k  +a+  + ++    + v R g w+++e++el pGD+++l 
  MMETSP1061-20121228|8818_1 302 RYGPNAFSVKQPTFIELYKAQLLSPFTVFQ-IFCVILWMLDEyWQySFFTLFMVLTFEATVVFSR-IKSLSALRGMGNQP-RLVLVYRLGSWTSVETTELLPGDIMSLT 407
                 6************************98655.55555556655476468889999999*****976.56667777776654.44679*******************9985 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 2.6e-07
   TIGR01647 119 klGdivpaDvklvegdklkvDqaaltGEslpvekklgdiaysgsvv.kkGEveavvvatGvntffGkaakLveeaekesghl 199
                 + Gd++paD+ l+ g+   v++a+ltGEs+p  k+   ++  g  +  kG  ++ v + G++    k a+ +e++  e+ ++
  MMETSP1061-20121228|8818_1 437 EGGDLIPADLLLLRGS-TVVNEASLTGESVPQMKEGLSEMEDGEHLsMKGKNKMNVAYAGTKMLQCKGAAELESQVGETKSF 517
                 679************9.679***********998876666666655279***********9999998777666655455555 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00031
   TIGR01647 171 avvvatGvntffGkaakLveeaekesghlqkilskigavlivlilvlvliellvellkrkeslreslqfalvllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnkls 303
                 + v  tG +   Gk ++++e  ++++   +k    +  +l  ++++    +l   l++ k+s  e l + + ++ + iP  lp+ ++ ++     +L k ++  +    +     +d    DktGtlt+++l+
  MMETSP1061-20121228|8818_1 531 CFVLRTGFSSQQGKLVRMIEGSQEKVKGHEKETGLLLLLLFFFAVTSSGYVLYHGLQSDKRSKFELLLHCILIITSVIPPELPMQMALAVNNSLMTLMKLHIFCTEPYRVPIAGKLDACLFDKTGTLTTDELV 663
                 67999**************99886664444433334444444444445555555566556666666777777788899*****99988888888999*************998899*999*********9997 PP

  == domain 4    score: 39.1 bits;  conditional E-value: 2e-13
   TIGR01647 348 ealekykelefvpfdpvekrteatledeetgkkfkvtkGapqvildlvkekkeieeeveekveelAerGlRaLgvava................dekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglgtnilt...aekllkkkked 498
                 ++++++++l  + f +  +r    +++  +g++++v kG+p+++ +l   k +    +++k + l + G+R +++a +                + +++ +++g +++    r+Dt   + r ke g+++ mvtGD+l+ a  +a+++++ + i +   ++ ll++++e+
  MMETSP1061-20121228|8818_1 759 KNITQIEVLTRHHFSSKLQRMSCVIKSVTSGQHYSVLKGSPEAVGRLLAVKPK---GYDDKAAYLSKEGYRVIAMALKplasqgqiseaqdsraNCEKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNIIEPIGQksdSDYLLTEQNEE 925
                 5789999999************************************9987755...46889999999*******999999999****999999888999**************************************************998886411145555555543 PP

  == domain 5    score: 28.2 bits;  conditional E-value: 3.9e-10
   TIGR01647  508 lvekadGFAevfPeHkyeivealqkrghlvgmtGDGvnDaPaLkkAdvGiAv 559 
                  ++ +   F  + P+ k +++e l++ g ++ m GDG+nD+ aLk AdvG+A 
  MMETSP1061-20121228|8818_1 1009 VLGHFKVFSRMTPDAKETVIECLHSVGATCLMCGDGANDVGALKGADVGVAL 1060
                  334567799999**************************************96 PP

  == domain 6    score: 1.1 bits;  conditional E-value: 0.06
   TIGR01647  659 nlkevflvaivlgli...lvvstllllalald....tsffedkvllelkkeelqsllylkvsisgqllifvtRtkgfsfver..pgkllliavviaqivatlia 753 
                   l+++f  a++++l+   ++  t +++a+ +        + ++   + k + l+++++l vs ++q+++fv+  +g+ f++       ll+++v++ i++ ++a
  MMETSP1061-20121228|8818_1 1340 PLTSIFHPALFISLLgqfAIHLTTMMIAVYYAkknlPPDYDADLDGQFKPGILNTVVFL-VSNVQQVTVFVVNLQGRPFMTGltENRPLLWSLVCTFILTFMFA 1442
                  45556655544433300033333333333332111112244444444445559999999.88889***************975456678888888877766665 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.1   6.8e-11     2e-08     155     353 ..     434     663 ..     404     671 .. 0.80
   2 !   27.4   0.0   5.6e-10   1.6e-07     467     554 ..     813     905 ..     793     933 .. 0.84
   3 !   26.8   0.1   8.2e-10   2.4e-07     569     634 ..    1002    1068 ..     988    1079 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 6.8e-11
   TIGR01524 155 iklaaGdlipadvrviaardlliaqsaltGeslpvek..vaatkea............................kdkellelenlllmGtnvvsGraqavvlatGsstffGslakavsedreqtafdkGvksvskllirfmlvmvpvvllinGls..kGdwleaalfalavavGltpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkiv 353
                 ++   Gdlipad+ ++     ++++++ltGes+p  k  ++++++                              ++++ e++++  +  n     +   vl+tG s+  G+l + + +++e+   +     +  ll+ f  v     +l  Gl+  k   +e  l+ + +   + p  lpm ++ ++ +  ++l k  +   e   +   G +d    dktGtlt d++v
  MMETSP1061-20121228|8818_1 434 VEDEGGDLIPADLLLLRGS-TVVNEASLTGESVPQMKegLSEMEDGehlsmkgknkmnvayagtkmlqckgaaeLESQVGETKSFTPVIPNPPDNGCVCFVLRTGFSSQQGKLVRMIEGSQEKVKGHEKETGLLLLLLFFFAVTSSGYVLYHGLQsdKRSKFELLLHCILIITSVIPPELPMQMALAVNNSLMTLMKLHIFCTEPYRVPIAGKLDACLFDKTGTLTTDELV 663
                 56678********999876.579***********866225666666999************999999886655444555555555555566666677889******************97777654444455556666666666666777888863477899******************************************************************997 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 5.6e-10
   TIGR01524 467 lkavteelnrqGlrvvavatkklka....sead.lskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGi 554
                   ++++ l ++G rv+a+a k l +    sea+  + + e+++  +Gf+af   +++ t+  +  lk+ g+++ ++tGd+ + + ++ +ev i
  MMETSP1061-20121228|8818_1 813 YDDKAAYLSKEGYRVIAMALKPLASqgqiSEAQdSRANCEKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNI 905
                 567888999***********987651111455424556699**************************************************87 PP

  == domain 3    score: 26.8 bits;  conditional E-value: 8.2e-10
   TIGR01524  569 sdeelaaevekravfarltplqkerivtllkkeGhtvGflGdGindapalrkadvGisvds.aadia 634 
                  sd+   + + + +vf+r+tp  ke +++ l+  G t  + GdG nd  al+ advG+++ +   di 
  MMETSP1061-20121228|8818_1 1002 SDNVTKTVLGHFKVFSRMTPDAKETVIECLHSVGATCLMCGDGANDVGALKGADVGVALLTgFGDIN 1068
                  5555556678899********************************************9744134554 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.2e-06   0.00065      24     119 ..     381     473 ..     349     494 .. 0.63
   2 !   12.2   0.0   4.4e-05     0.013     218     270 ..     616     668 ..     550     704 .. 0.71
   3 !   24.1   0.0   1.1e-08   3.2e-06     356     428 ..     838     907 ..     744     912 .. 0.84
   4 !   32.3   0.1   3.6e-11   1.1e-08     424     479 ..    1010    1063 ..    1001    1073 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.2e-06
   TIGR01525  24 llvllllgelLeelakskasealsellelapeealllkeddseeevaveelqvgDivkVkpGekipvDGeviegesevDesllTGEslpvekkegd 119
                 l++ + lg + +  +++    ++ +l + +p+ a   ++   + + + ++  v   v+ + G+ ip+D  +++g++ v+e++lTGEs+p  k+  +
  MMETSP1061-20121228|8818_1 381 LVLVYRLGSWTSVETTELLPGDIMSLTRIKPHFASSNNS---VADGDKKKKVVSKKVEDEGGDLIPADLLLLRGSTVVNEASLTGESVPQMKEGLS 473
                 555555555555555555555556666666554443332...22222222223333444679***************************9998655 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.4e-05
   TIGR01525 218 tpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdve 270
                 + +a+  ++ +  k  i+  +   +  + k+++ +fDKTGTLT+ +l+ + v 
  MMETSP1061-20121228|8818_1 616 MALAVNNSLMTLMKLHIFCTEPYRVPIAGKLDACLFDKTGTLTTDELVAVGVC 668
                 55555555555556666666666666688999************999887654 PP

  == domain 3    score: 24.1 bits;  conditional E-value: 1.1e-08
   TIGR01525 356 keeleeeeeqgktvvlvavddellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgiid 428
                 + +++e   ++++ +   +d +++g+ia++ ++r+++++++ +Lk+ g+++ ++tGD   +a +vAke+ ii+
  MMETSP1061-20121228|8818_1 838 QGQISE---AQDSRANCEKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNIIE 907
                 444444...466777778899***********************9999*********************9964 PP

  == domain 4    score: 32.3 bits;  conditional E-value: 3.6e-11
   TIGR01525  424 lgiidevvaellPedKlakvkklqeeegkkvamvGDGiNDApALaaAdvGiamgsg 479 
                  lg   +v++ ++P+ K ++++ l+ + g + +m+GDG ND  AL+ AdvG+a+ +g
  MMETSP1061-20121228|8818_1 1010 LG-HFKVFSRMTPDAKETVIECLH-SVGATCLMCGDGANDVGALKGADVGVALLTG 1063
                  67.589*****************9.55668**********************9865 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.0   0.00026     0.077     141     203 ..     434     503 ..     416     522 .. 0.70
   2 !    4.3   0.1    0.0048       1.4     207     337 ..     533     664 ..     526     676 .. 0.81
   3 !   27.4   0.1   5.3e-10   1.5e-07     408     569 ..     769     938 ..     755     975 .. 0.77
   4 !   36.2   0.1   1.2e-12   3.4e-10     553     619 ..    1001    1067 ..     977    1090 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00026
   TIGR01522 141 velsvGdrvpadlriveavdlsidesnltGettpvkkss....eaieala....ersniaymGtlvreGkg 203
                 ve + Gd +padl +++     ++e++ltGe+ p  k+     e  e+l+    ++ n+ay Gt + + kg
  MMETSP1061-20121228|8818_1 434 VEDEGGDLIPADLLLLRGST-VVNEASLTGESVPQMKEGlsemEDGEHLSmkgkNKMNVAYAGTKMLQCKG 503
                 556679**********9876.59************997521112334454222257799999997766655 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0048
   TIGR01522 207 vvgtGsntefGavfemmqeiekpktplqksmdklGkdlslvsfivigvivlvGllqG.kdwlemftisvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtv 337
                 v+ tG  ++ G++ +m++  ++     +k    l   l +++++  g ++  Gl    ++ +e++   + +  + ip  lp+ +++++   ++ + k +        v   G ++    dktGtlt++++  
  MMETSP1061-20121228|8818_1 533 VLRTGFSSQQGKLVRMIEGSQEKVKGHEKETGLLLLLLFFFAVTSSGYVLYHGLQSDkRSKFELLLHCILIITSVIPPELPMQMALAVNNSLMTLMKLHIFCTEPYRVPIAGKLDACLFDKTGTLTTDELVA 664
                 6778888888888888876555555556666666677777777888888888887642678999999999999***************99******9999999888999999999999********999764 PP

  == domain 3    score: 27.4 bits;  conditional E-value: 5.3e-10
   TIGR01522 408 evpfsserkyma..vkvltdskkivfvkGateqvleyctsylk.kdGkteklteeqkekiqeeaaemaseGlrvlalask..tekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavksske..Gekldelddqqlsevv.dkvavfa 569
                    fss+ + m+  +k +t+ ++   +kG+ e v +  +   k  d k + l++e   +i    + +as+G    a  s+   ekd+ faG++ ++   r d    + +l +gG+++ m+tGd+  ta+ +a+++ +    +++   + l + ++++l++++ +k  v  
  MMETSP1061-20121228|8818_1 769 RHHFSSKLQRMScvIKSVTSGQHYSVLKGSPEAVGRLLAVKPKgYDDKAAYLSKEGYRVIAMALKPLASQGQISEAQDSRanCEKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNIIEPIGQKsdSDYLLTEQNEELKKLIlKKRGVVE 938
                 567999988887224567788889999*****9998876654415778999999999999999999*****877776654115799*************************************************99765554400455666666677665414444444 PP

  == domain 4    score: 36.2 bits;  conditional E-value: 1.2e-12
   TIGR01522  553 lddqqlsevvdkvavfaraspehklkivkalqkrGdvvamtGdGvndapalkladiGvamGrtGtdv 619 
                   +d+  + v+ + +vf r +p+ k  ++++l++ G    m GdG nd  alk ad+Gva+     d+
  MMETSP1061-20121228|8818_1 1001 ESDNVTKTVLGHFKVFSRMTPDAKETVIECLHSVGATCLMCGDGANDVGALKGADVGVALLTGFGDI 1067
                  34455567899************************************************85544444 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   3.7e-07   0.00011     142     378 ..     434     671 ..     403     701 .. 0.69
   2 !   31.4   0.0   2.9e-11   8.5e-09     487     636 ..     768     909 ..     748     921 .. 0.72
   3 !   25.2   0.1   2.2e-09   6.4e-07     670     728 ..    1014    1072 ..     986    1078 .. 0.83
   4 ?   -1.8   0.2      0.31        91     922     956 ..    1415    1451 ..    1409    1520 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 3.7e-07
   TIGR01523 142 vllkvgdvvpadlrlvetknfetdealltgeslpvikdanlvfqkeeevsvg..drlnlaysssivvkgrakgiviktalqseigkiakslrqdsklisrepsk...rrklnkyil..tkkvvqavlglnvgtplqrklskl.avllfciavllaiivmaaqkfdvdke....vaiyaislalsiipeslvvvlsitmavgakvmvkrrvivrklealealgavtdicsdktgtltqgkmlarrvwipr 378
                 v    gd +padl l+       +ea ltges+p +k+    ++  e+ s+   +++n+ay+ + + +   kg   ++ l+s++g+  ks+   + +i   p++      l + ++    k+v+ + g +     + k + l  +llf+ av  +  v+  + ++ dk+    + ++ i +  s+ip  l + +++++     ++ k ++       +   g ++    dktgtlt   ++a  v  p+
  MMETSP1061-20121228|8818_1 434 VEDEGGDLIPADLLLLRGSTV-VNEASLTGESVPQMKEGLSEMEDGEHLSMKgkNKMNVAYAGTKMLQ--CKG---AAELESQVGET-KSF---TPVIPNPPDNgcvCFVLRTGFSsqQGKLVRMIEGSQEKVKGHEKETGLlLLLLFFFAVTSSGYVLY-HGLQSDKRskfeLLLHCILIITSVIPPELPMQMALAVNNSLMTLMKLHIFCTEPYRVPIAGKLDACLFDKTGTLTTDELVAVGVCQPS 671
                 345679*********998765.78999********************999852378*****9988875..455...56899999985.444...445555554411134444444435567888888988888888887765156788899988877764.5555555411114567777777888888876655555444445555555555555566666666666899999999999998887776 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 2.9e-11
   TIGR01523 487 aeypfdsevkrmavvyed.qqnetytvyakgaverilercsssygstleepdveliikqveslaaeglrvlalaskvidkd.dvnit.lnrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptnl 636
                 + + f s+++rm++v +    ++ y+v  kg+ e +           l     +    +   l++eg rv+a+a k +  + +  ++  +r+  e d+ f +++      r+++   + ++++ g+ + m+tgd   ta  +a+ev i+ + +
  MMETSP1061-20121228|8818_1 768 TRHHFSSKLQRMSCVIKSvTSGQHYSVL-KGSPEAVG--------RLLA-VKPKGYDDKAAYLSKEGYRVIAMALKPLASQgQISEAqDSRANCEKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNIIEP-I 909
                 5566677777776655441345555553.45544432........2221.1222223445679*************9976515555415799*********************************************************87.3 PP

  == domain 3    score: 25.2 bits;  conditional E-value: 2.2e-09
   TIGR01523  670 lviarcapqtkvkmiealhrrkkfvamtgdgvndspslkqanvgiamgingsdvakeas 728 
                   v +r +p++k  +ie lh   + + m gdg nd  +lk a+vg+a+     d+  + +
  MMETSP1061-20121228|8818_1 1014 KVFSRMTPDAKETVIECLHSVGATCLMCGDGANDVGALKGADVGVALLTGFGDINVDKT 1072
                  5899******************************************9777777666555 PP

  == domain 4    score: -1.8 bits;  conditional E-value: 0.31
   TIGR01523  922 keflrslvenkflawaiilaavsvf..pvvyipvind 956 
                  + f+  l en+ l+w+++ +++ +f      ip +n+
  MMETSP1061-20121228|8818_1 1415 RPFMTGLTENRPLLWSLVCTFILTFmfASESIPSLNK 1451
                  6688888888888888888887655114445666654 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   2.6e-06   0.00076     100     140 ..     434     474 ..     401     498 .. 0.83
   2 !    8.2   0.0   0.00073      0.21     258     283 ..     643     668 ..     600     691 .. 0.80
   3 !   17.8   0.0   8.7e-07   0.00025     344     408 ..     842     905 ..     803     915 .. 0.84
   4 !   25.1   0.0   5.5e-09   1.6e-06     409     461 ..    1014    1069 ..    1002    1074 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 2.6e-06
   TIGR01511 100 lkvkpgekipvDGvvveGesevdeslltGEslpvkkkvgde 140
                 ++ + g+ ip+D  +++G++ v+e+ ltGEs+p+ k+  +e
  MMETSP1061-20121228|8818_1 434 VEDEGGDLIPADLLLLRGSTVVNEASLTGESVPQMKEGLSE 474
                 5557899***************************9986555 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00073
   TIGR01511 258 aaevdtvvfDKTGTLTeGklevtevk 283
                 a ++d+ +fDKTGTLT+ +l+ + v 
  MMETSP1061-20121228|8818_1 643 AGKLDACLFDKTGTLTTDELVAVGVC 668
                 678999***********998766654 PP

  == domain 3    score: 17.8 bits;  conditional E-value: 8.7e-07
   TIGR01511 344 keekgttsvlvakkgelaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgi 408
                 + e++ +++  +k+ + a+++a   ++++++ +v+ +Lk+ g+++ ++tGD   +a +vAke+ i
  MMETSP1061-20121228|8818_1 842 S-EAQDSRANCEKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNI 905
                 3.3344444558899999********************************************987 PP

  == domain 4    score: 25.1 bits;  conditional E-value: 5.5e-09
   TIGR01511  409 evlaevlPedKaakvkelqe..kkvamvGDGiNDapaLaaadvgiaigag.tdvai 461 
                  +v++ ++P+ K+ +++ l++  ++ +m+GDG ND  aL  advg+a+ +g  d+ +
  MMETSP1061-20121228|8818_1 1014 KVFSRMTPDAKETVIECLHSvgATCLMCGDGANDVGALKGADVGVALLTGfGDINV 1069
                  799*************998744789**********************998346655 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.2   3.4e-06     0.001     182     252 ..     436     507 ..     426     517 .. 0.79
   2 !   12.1   0.1   2.8e-05    0.0081     275     380 ..     563     666 ..     529     674 .. 0.75
   3 !   22.0   0.0   2.9e-08   8.5e-06     435     586 ..     759     908 ..     750     937 .. 0.81
   4 !   22.9   0.2   1.5e-08   4.4e-06     594     664 ..    1003    1073 ..     982    1074 .. 0.83
   5 ?   -2.0   0.2      0.52   1.5e+02     825     868 ..    1395    1436 ..    1384    1448 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.4e-06
   TIGR01517 182 lstGdvvpaDgvlisGlklkiDessltGesdpi.kkgkekLlsGtkv.legsgrmlvtavGvnsvtGklltel 252
                  + Gd++paD +l++G + +++e+sltGes p+ k g +++  G ++ ++g+ +m v+  G +  + k   el
  MMETSP1061-20121228|8818_1 436 DEGGDLIPADLLLLRG-STVVNEASLTGESVPQmKEGLSEMEDGEHLsMKGKNKMNVAYAGTKMLQCKGAAEL 507
                 567*************.8889*********8862667889999999757899999999999887766655555 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 2.8e-05
   TIGR01517 275 fGlgsavll.llvlvlryviekivedteekaktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvk 380
                  Gl+  +l  + v +  yv+++  ++++      ++l++ ++ i+   +P  LP+ + la+  + + l+k +    +       G   a   DktGtLt++ ++ v 
  MMETSP1061-20121228|8818_1 563 TGLLLLLLFfFAVTSSGYVLYHGLQSDKR---SKFELLLHCILIITSVIPPELPMQMALAVNNSLMTLMKLHIFCTEPYRVPIAGKLDACLFDKTGTLTTDELVAVG 666
                 45554444314556666777665555444...44567788888888889***************************************************9988765 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 2.9e-08
   TIGR01517 435 ekrkeekvvkiypfeserkkmsvvvkh..seglRlfikGaseivlkkcekk.ldsngeakeisek.kdevedeienlasealRtislaykdelpekdspnkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgilta 586
                 +++++ +v+    f+s+ ++ms v+k   s+      kG+ e v + +  k  + +++a  +s++    ++  +++las++         ++ +++ + +k + + + + +   vr +      + ++ G+ + mvtGD l ta  +a+e +i++ 
  MMETSP1061-20121228|8818_1 759 KNITQIEVLTRHHFSSKLQRMSCVIKSvtSGQHYSVLKGSPEAVGRLLAVKpKGYDDKAAYLSKEgYRVIAMALKPLASQGQI------SEAQDSRANCEKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNIIEP 908
                 5566677888899************973245566678********9998762456777777765515678999******9953......344455555668899999999999**************************************99865 PP

  == domain 4    score: 22.9 bits;  conditional E-value: 1.5e-08
   TIGR01517  594 kefrkdkilpklrvlaRssPlDkqlLve.lkklgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasD 664 
                   +   +++l +++v++R +P  k++++e l++ g    + GDG+nD  aLk advG+a+  +  ++ ++ +D
  MMETSP1061-20121228|8818_1 1003 DN-VTKTVLGHFKVFSRMTPDAKETVIEcLHSVGATCLMCGDGANDVGALKGADVGVALLTGFGDINVDKTD 1073
                  33.456799*****************9868899*************************98888888777665 PP

  == domain 5    score: -2.0 bits;  conditional E-value: 0.52
   TIGR01517  825 aifvaivlitlavqviivefgGaalsvvslsieqWllcvllgal 868 
                   +f  +v  +  v v++v++ G ++ +   + +  l++++++++
  MMETSP1061-20121228|8818_1 1395 VVF--LVSNVQQVTVFVVNLQGRPFMTGLTENRPLLWSLVCTFI 1436
                  222..34555666799999******9999999999999999876 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   5.6e-07   0.00017      25     120 ..     382     479 ..     371     497 .. 0.76
   2 !   10.3   0.0   0.00015     0.044     228     260 ..     640     672 ..     596     708 .. 0.75
   3 !   15.7   0.1   3.5e-06     0.001     310     363 ..     851     903 ..     836     906 .. 0.89
   4 !   18.0   0.1     7e-07   0.00021     366     409 ..    1014    1061 ..    1001    1074 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 5.6e-07
   TIGR01512  25 lllfslgetLeelaskrakealkaLlelaPdtarrleeeVa..veelkvgdvvvVkkGervPvDGevlsgessldesalTGEsvpvekakgdevlaGa 120
                 +l+++lg +     ++    ++ +L + +P+ a   ++  +   ++  v   v+ + G+ +P+D  +l g+++++e++lTGEsvp  k+  +e+  G 
  MMETSP1061-20121228|8818_1 382 VLVYRLGSWTSVETTELLPGDIMSLTRIKPHFASSNNSVADgdKKKKVVSKKVEDEGGDLIPADLLLLRGSTVVNEASLTGESVPQMKEGLSEMEDGE 479
                 555666666666666666667788888888887766654431144556888999999*****************************999988888775 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00015
   TIGR01512 228 lealakvktvalDKTGTLTkGklkvsdvealel 260
                 +  ++k+++ ++DKTGTLT+ +l+ + v + + 
  MMETSP1061-20121228|8818_1 640 VPIAGKLDACLFDKTGTLTTDELVAVGVCQPSK 672
                 55678999*************999887765555 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 3.5e-06
   TIGR01512 310 valdekllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeel 363
                   +d +++g ia++ +vr+d+++++ +Lk+ g+  ++++tGD   +a +va+e+
  MMETSP1061-20121228|8818_1 851 CEKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGM-SIAMVTGDALLTAIHVAKEV 903
                 5678899*************************5.89***************997 PP

  == domain 4    score: 18.0 bits;  conditional E-value: 7e-07
   TIGR01512  366 evhaellPedKveivkelkev....amvGDGiNDapaLaaAdvgiamG 409 
                  +v   ++P+ K ++++ l++v    +m GDG ND  aL+ Advg+a+ 
  MMETSP1061-20121228|8818_1 1014 KVFSRMTPDAKETVIECLHSVgatcLMCGDGANDVGALKGADVGVALL 1061
                  57788999999999988865433338********************85 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   3.5e-05      0.01      68     149 ..     419     502 ..     403     514 .. 0.72
   2 !   20.0   0.0   1.1e-07   3.3e-05     269     507 ..     650     907 ..     607     931 .. 0.74
   3 !   23.4   0.0     1e-08     3e-06     523     571 ..    1014    1063 ..    1000    1073 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.5e-05
   TIGR01116  68 vlrdarkakdlvpGdivelavGdkvpadvrllelkslkvdqsiltGesvsvekktesvkkekaav....qdkknmlfsGtlvvaGk 149
                  + d+ k+k +v    ve + Gd +pad+ ll+  +  v++++ltGesv+ +k+  s  ++ +++    ++k+n+ ++Gt++ + k
  MMETSP1061-20121228|8818_1 419 SVADGDKKKKVVS-KKVEDEGGDLIPADLLLLRGST-VVNEASLTGESVPQMKEGLSEMEDGEHLsmkgKNKMNVAYAGTKMLQCK 502
                 4556666666665.5678899********9987655.689999**********97665555443311225788999****987654 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.1e-07
   TIGR01116 269 csdktGtlttnkmsvaklvalekefkvegttyepveakikdleelakiaalcndsklavdkkkvekvGeateaa.lkvlveklglsaakn......kkslksrealacnslikkkat....l...efsrdrksmsvlvk.....snklfvkGapeellersthil...lkgsavPltekakqkilaslkelssealrclalavke..esklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGils 507
                   dktGtltt+++  + +    ++ ++   + +   + ++++ ++   aa+       + + + e +G++ e a lk +   l   +++       +k+ + ++++    + +k++t    l   +fs + + ms ++k     ++    kG+pe +  r   ++    +++a+ l+++  + i   lk l+s++  + a   +   e ++ f+G +++    r++    + + +e G+++ ++tGd   ta  +a+++ i++
  MMETSP1061-20121228|8818_1 650 LFDKTGTLTTDELVAVGVCQ-PSKLQIPKGKEDEDSKFLTPMIQIHDEAAMVLSGCHSLVHIEGETTGDPLESApLKSMRWELSKESGNAipskatEKRPEGKPIN---VFSEKNITqievLtrhHFSSKLQRMSCVIKsvtsgQHYSVLKGSPEAVG-RLLAVKpkgYDDKAAYLSKEGYRVIAMALKPLASQGQISEAQDSRAncEKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNIIE 907
                 469********997666554.5667777777777777788888888877777766666677778899***998779999888776554331100003333333332...22233222111122225777777787665522222678899*****984.4444541115678999999999*************998888766652277899***********************************************9986 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 1e-08
   TIGR01116  523 lvfsrvePshklklve.lkeldqivamtGdGvndaPalkkadiGiamGsG 571 
                   vfsr+ P  k  ++e l++++  + m GdG nd  alk ad+G+a+ +G
  MMETSP1061-20121228|8818_1 1014 KVFSRMTPDAKETVIEcLHSVGATCLMCGDGANDVGALKGADVGVALLTG 1063
                  69*************956899*************************9887 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.1e-06    0.0009     157     202 ..     426     470 ..     404     505 .. 0.81
   2 !   10.1   0.0   9.5e-05     0.028     554     609 ..     852     907 ..     824     919 .. 0.90
   3 !   23.1   0.0   1.1e-08   3.1e-06     647     714 ..    1000    1066 ..     980    1074 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.1e-06
   TIGR01106 157 eevvvgdlvevkggdripadlriisakglkvdnssltgesepqtrs 202
                 ++ vv + ve +ggd ipadl ++      v+++sltges pq + 
  MMETSP1061-20121228|8818_1 426 KKKVVSKKVEDEGGDLIPADLLLLRGST-VVNEASLTGESVPQMKE 470
                 45799999*************9998765.5899**********875 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 9.5e-05
   TIGR01106 554 venlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiis 609
                  ++++f+g++++    r      + + +  g+ + mvtgd  +ta  +ak v ii 
  MMETSP1061-20121228|8818_1 852 EKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNIIE 907
                 56799*************999999******************************96 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 1.1e-08
   TIGR01106  647 ltseqldeilkehteivfartspqqkliivegcqrqgaivavtgdgvndspalkkadigvamgiagsd 714 
                  l+s+++ + +  h + vf+r +p+ k  ++e     ga   + gdg nd  alk ad+gva+     d
  MMETSP1061-20121228|8818_1 1000 LESDNVTKTVLGHFK-VFSRMTPDAKETVIECLHSVGATCLMCGDGANDVGALKGADVGVALLTGFGD 1066
                  566666666666654.8********************************************8555444 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.1e-06   0.00031     130     170 ..     434     474 ..     408     485 .. 0.82
   2 !    5.2   0.0    0.0034         1     200     314 ..     544     661 ..     533     674 .. 0.66
   3 !    7.7   0.0   0.00059      0.17     433     490 ..     853     910 ..     747     932 .. 0.89
   4 !   16.8   0.0     1e-06    0.0003     490     536 ..    1017    1063 ..    1004    1074 .. 0.92

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.1e-06
   TIGR01497 130 vlveaGdvipadGevieGvasvdesaitGesapvlkesGgd 170
                 v  e Gd+ipad  ++ G++ v+e+++tGes p +ke  ++
  MMETSP1061-20121228|8818_1 434 VEDEGGDLIPADLLLLRGSTVVNEASLTGESVPQMKEGLSE 474
                 44578*******************************98665 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0034
   TIGR01497 200 rmialveGaerrktpneialtvllvaltlvfllvvatlypl..aayagvkisvsvlva...llvalipttiGGllsaiGi.aGmdrvarfnviatsGraveaaGdvdtlvldktGtitlGn 314
                 +++ ++eG++ +    e    +ll  l l f+ v+++ y+l     ++++ +  +l+    ++ ++ip  +   + a+ +   +  ++++ +  t    v  aG +d+ ++dktGt+t  +
  MMETSP1061-20121228|8818_1 544 KLVRMIEGSQEKVKGHEKETGLLL--LLLFFFAVTSSGYVLyhGLQSDKRSKFELLLHcilIITSVIPPELPMQM-ALAVnNSLMTLMKLHIFCTEPYRVPIAGKLDACLFDKTGTLTTDE 661
                 788999999988877776655554..3445555666666551123445555555443211023345565554443.444414566788999**************************9765 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.00059
   TIGR01497 433 vdnkiyGviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGvddfia 490
                 +d +  G i++   v+      + +l++ G+   m+tGd  lta  +ake  + + i 
  MMETSP1061-20121228|8818_1 853 KDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNIIEPIG 910
                 567888999999999999999999**************************98766655 PP

  == domain 4    score: 16.8 bits;  conditional E-value: 1e-06
   TIGR01497  490 aeatpedkievikkeqaeGklvamtGdGtndapalaqadvgvamnsG 536 
                  +  tp++k +vi+   + G    m GdG+nd  al  advgva+ +G
  MMETSP1061-20121228|8818_1 1017 SRMTPDAKETVIECLHSVGATCLMCGDGANDVGALKGADVGVALLTG 1063
                  6789***************************************9988 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.49   1.4e+02     114     155 ..     438     474 ..     419     514 .. 0.78
   2 ?    0.1   0.0     0.086        25     358     376 ..     644     662 ..     643     697 .. 0.84
   3 !   41.6   0.4   2.6e-14   7.6e-12     507     793 ..     761    1059 ..     744    1069 .. 0.74

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.49
   TIGR01652 114 kdeeiPaDllllssseedGvcyveTknLDGEtnlKlrqalee 155
                  ++ iPaDllll+     G+  v+ + L GE+  +++++l+e
  MMETSP1061-20121228|8818_1 438 GGDLIPADLLLLR-----GSTVVNEASLTGESVPQMKEGLSE 474
                 4689********8.....556677777777777666666665 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.086
   TIGR01652 358 GqveyifSDKTGTLTqNkm 376
                 G+++  + DKTGTLT+ ++
  MMETSP1061-20121228|8818_1 644 GKLDACLFDKTGTLTTDEL 662
                 8899999********9876 PP

  == domain 3    score: 41.6 bits;  conditional E-value: 2.6e-14
   TIGR01652  507 ekeyeiLnvleFnSsrKRmsvivrlpdd.ellLlcKGADsvifkrlseesekvlektkehlekyaseGlRTLviarrelseeeYeewnekyeeAstalkdreekleevaeliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLlse....emellvikees...................ldaleaveaaik.........keleeseeeleelkk...........................keklalviDGksLklaLkee.lekeflelalkckavlcCRvsPsqKaavvklvkkslskvtlaigdGaNDVsmiqeAdvGvG 793 
                    + e+L  + F+S+ +Rms++++     + + + KG    + + l+ + + +      + + +++eG R + +a + l ++               +++ ++       + Ek+++  g  a   ++ ++    +  L+e g+ i ++TGD   TAi ++   ++++       + ++++e++                   +          k         +             +                           +++  l   GksL laL+++ + k++l   +     +  R++P  K +v++ +++   ++ l  gdGaNDV+ ++ AdvGv 
  MMETSP1061-20121228|8818_1  761 ITQIEVLTRHHFSSKLQRMSCVIKSVTSgQHYSVLKGSPEAVGRLLAVKPKGY----DDKAAYLSKEGYRVIAMALKPLASQG-------------QISEAQDSR----ANCEKDMRFAGFIAFTCRVRKDTSAVLLRLKEGGMSIAMVTGDALLTAIHVAKEVNIIEPigqkSDSDYLLTEQNeelkklilkkrgvvenakeK-----K----KkefkpilllE-------------QsngslywenyetgekvgdfdashiptlSKDNDLATTGKSLALALESDnVTKTVLGHFK-----VFSRMTPDAKETVIECLHSV-GATCLMCGDGANDVGALKGADVGVA 1059
                  457899999**************987776999999*******99999866555....5567899*************997653.............233333333....356******************************************************97422112223334333346777766554443322210.....1....11222333331.............133334444444455666677788999999999************99845555554333.....567************99875.7999999****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 1.28u 0.16s 00:00:01.44 Elapsed: 00:00:01.10
# Mc/sec: 1886.24
//
Query:       MMETSP1061-20121228|8823_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1260.28
//
Query:       MMETSP1061-20121228|8826_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.1    3.8  20.1          8    3.1  13.9    1.3  1  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1  13.9    0.0019         8       8      49 ..     152     193 ..     132     223 .. 0.57

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0019
   TIGR01622   8 eRsRdssreadrdrerdksrersRdrsrdRersrskerdrdf 49 
                 +R+R+++r+ +++r+   +rer R+r++ R+r+r ++r  + 
  MMETSP1061-20121228|8826_1 152 NRNRNRNRKPRDERKLRYERERRRQRKQRRRRNRIRQRKERE 193
                 344444444445555555555555554444444433222211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 1149.58
//
Query:       MMETSP1061-20121228|8825_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 1324.02
//
Query:       MMETSP1061-20121228|8827_1  [L=845]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (845 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.54
# Mc/sec: 2065.38
//
Query:       MMETSP1061-20121228|8828_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2248.21
//
Query:       MMETSP1061-20121228|8833_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1507.72
//
Query:       MMETSP1061-20121228|8830_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1088.91
//
Query:       MMETSP1061-20121228|8835_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|8837_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 776.10
//
Query:       MMETSP1061-20121228|8840_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 515.96
//
Query:       MMETSP1061-20121228|8831_1  [L=1188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.6e-160  532.5   4.9      4e-90  301.1   0.0    4.1  4  TIGR00596 rad1: DNA repair protein (rad1)


Domain annotation for each model (and alignments):
>> TIGR00596  rad1: DNA repair protein (rad1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.1   0.0   9.8e-94     4e-90       1     317 [.     127     471 ..     127     510 .. 0.85
   2 !  173.2   0.2   4.6e-55   1.9e-51     349     646 ..     597     911 ..     547     914 .. 0.66
   3 !   35.0   0.1   2.8e-13   1.1e-09     643     691 ..     976    1023 ..     965    1041 .. 0.84
   4 !   22.2   0.0     2e-09   8.2e-06     720     804 ..    1087    1187 ..    1078    1188 .] 0.84

  Alignments for each domain:
  == domain 1    score: 301.1 bits;  conditional E-value: 9.8e-94
   TIGR00596   1 RekvYleGGilsitsRiLvvDlLtkiipsekitGilvlrAdrivessqeaFilrlyRqknkt..GFikAFsdnpeaFtvgfsalervmrnlflrkvylwPRFhvevasvL..ekkkaevielkvsltdsmkeiqsalleilealikelkrknselel..........edlnlenaltknFdkivrrqldpvWHrvsaktkqlvkDlkiLrtllkslvayDavsflklldlslrankkalsskasespWlllDaaqkiiklarkRvyk........kkegeeekkelvleeqPkWevLtdvLkeieael....reseree......sngkvlilcaDertClqLrdyltt 317
                 R+++Y  GG++ itsRiL+vDlL + + +  + G+lv +Adr+ + s+eaFilr+y ++ ++   FikAF+dnpe+ + gf+ +++++r l++r++yl+PRFh++++s L  +++ ++v el+  l++smk+iq a++  +++++kelk   + le           +dl++en++t +Fd+ v rql+  WHr++ +tkqlv Dl++Lr l+ sl+ yD+vsf+kl++ s ++  +a s+  +++ Wll  aa+ +++ a++R+y+            +  k  +vlee+PkW  L+ vL+ei +      +e+e e+        +++l++ +Dert   L+ +l  
  MMETSP1061-20121228|8831_1 127 RKQLYQRGGVFCITSRILIVDLLDNTLSPRDVDGMLVGHADRVHHDSTEAFILRIYTSQKRRdeCFIKAFTDNPENLLSGFARIDKTLRALRVRHLYLYPRFHEAIKSELeqNESAPHVQELHQDLSPSMKDIQGAIVAAVRTCMKELKSSTPFLEWrgdgkskggnDDLSIENCVTSAFDRAVSRQLEKDWHRLGPRTKQLVSDLRTLRALFGSLLRYDCVSFWKLIN-SIKT-MSAASR--NPAMWLLTPAADLLFRRAKERIYTvhrpeptrDVPRPLGKLVPVLEENPKWRLLKTVLEEIREVEeekgAETETETeitdrgTASTILVMVKDERTVDALKSFLVE 471
                 899*****************************************************876654238*********************************************55455679***********************************9996555555555589************************************************************.4443.444455..699*********************887766542335667999****************9886422223633333221111114569*****************987 PP

  == domain 2    score: 173.2 bits;  conditional E-value: 4.6e-55
   TIGR00596 349 vkkkeaakenassrvnktlrkekvaskrrrvrgakeaaveklreeetdevqvvekd.eeleee.....ldeleegeaaeeeaandskifeikdeledidiss.daeld.lpqlivhalkgerdeyvledvLeelkPkYvimyeadvsfiRqvevykas..kdkr..plrvYFlyyggsveeqryLtsvrrekdaFeklirekaslsivleeqedkee...kfLre.vktkis........kleksktrkaggqlakatlkqdkvivDlReFrssLPsllhrrgleviPvtltvGDYiltPdiCveRksisDLigslkngRLy 646
                  ++k+ + +n+ ++ +k  + +    krrr++  +++  + + ++e  e q v ++  e +e          e+  ++e + +++      +de+++++ +    ++  +p ++++  +g     +   vL +l P Y+++y+ dv+f+R ve++ a+  ++k+   l+vYFl+++ s e + +L ++ re++aFekli  k  +  ++ ++++ ++   + L+    + ++         l+ +  rkagg       ++  + vD+ReFrs LPs+lhr g+++ Pvtl vGD++l+   CveRksisDL gs+ +gRL 
  MMETSP1061-20121228|8831_1 597 ANNKSSNSNNNNKNTRKLNEVPDYLRKRRRIAVEQGRGRDMTATSEDRERQAVLEEaVEATEHdieafRATAEDVLRQERQQEQER--KREQDEEDNMYNTMfRPSFIeEPRVVIRSSTGIGRTGA-GLVLADLDPDYIVLYDFDVAFVRAVEIFAAMnpRNKKedRLKVYFLMFAASSEQKVFLKALEREQAAFEKLIYHKKTMPPPVLQVDGTTQelqQALAAgGGLGVAgtyangtlPLSMDTRRKAGGA----KGEKRDIAVDVREFRSALPSILHRGGMRLAPVTLLVGDFVLSNVHCVERKSISDLFGSFASGRLC 911
                 22222333333333444444445557888887776666444444444444444332023222221111333333333344333333..44456666666666555554699999988887755444.458***************************95533331146*************************************999966666554222233321112222433345433333344455555....488999*********************************************************95 PP

  == domain 3    score: 35.0 bits;  conditional E-value: 2.8e-13
   TIGR00596  643 gRLysqCekmlkyYkkPvLLieFdqnksFslepradlskeissvnrdiv 691 
                  +  y+q e+m+kyY+ P LLieFd+ ksF l+  +d   +i++ + +++
  MMETSP1061-20121228|8831_1  976 NNRYNQAEQMSKYYACPCLLIEFDPAKSFCLQNANDIGMDIKT-DSEVT 1023
                  3349*********************************999998.44443 PP

  == domain 4    score: 22.2 bits;  conditional E-value: 2e-09
   TIGR00596  720 eeLkllkeePDpatAvalg.................sdeesvaegk......kfnseeqdlLlklPgvtkknirnllkkvkslrelaklsqeeleeligdeeaakrly 804 
                  + Lk+ +ee D a+Av +g                  ++      +      + n++  d+Ll+lPgvt +  r ++++ + l++l ++s ++l  l g + ++++l+
  MMETSP1061-20121228|8831_1 1087 KALKANHEEVDVAKAVDIGkndslesllktdraeggGEN------EieieedEINEAGRDMLLQLPGVTIQLARRIMQECDCLADLIAMSRDQLRALAG-PSTGQKLF 1187
                  689****************99877777666554443334......144555599******************************************999.77777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:00.45
# Mc/sec: 3484.51
//
Query:       MMETSP1061-20121228|8842_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-06   23.6   0.1    6.9e-06   23.0   0.1    1.2  1  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2


Domain annotation for each model (and alignments):
>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   1.7e-09   6.9e-06     253     293 ..      11      51 ..       5      62 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.7e-09
   TIGR02151 253 vrsaakkleliasGGlrsgldvakalaLGAdlvglarplLk 293
                 ++++++k++liasG + +g+ + k +aLGAd+  +ar++L 
  MMETSP1061-20121228|8842_1  11 LDKSQSKIALIASGKVLTGMSMYKNFALGADVCNAARSFLF 51 
                 4555679*******************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1081.05
//
Query:       MMETSP1061-20121228|8838_1  [L=1521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.12s 00:00:00.68 Elapsed: 00:00:00.47
# Mc/sec: 4271.39
//
Query:       MMETSP1061-20121228|8843_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-33  112.2   0.0    2.1e-32  110.1   0.0    1.9  1  TIGR01378 thi_PPkinase: thiamine pyrophosphokinase


Domain annotation for each model (and alignments):
>> TIGR01378  thi_PPkinase: thiamine pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.1   0.0     5e-36   2.1e-32       2     196 ..      59     294 ..      58     303 .. 0.91

  Alignments for each domain:
  == domain 1    score: 110.1 bits;  conditional E-value: 5e-36
   TIGR01378   2 livlgg.kqeledllkllkead.lviaaDgGanhll..kaglkpdlivGDfDSiteellefykktgvklivlpaekDtTDlekalkkal................ergadeilvlgatGgRlDHvlanlnlllks.lkrgikvrlldeqnvitllrpgkhtiekeakge....................yiSllpfgesaanlttkglkYpLnnae.lkfggllsisNevieekvtv 196
                 l++l+  +++++ ll+ l++ +  +iaaDgGan+l+  +++l pd i GD+DS++  ++++y++++v + +++ +++++Dl+kal++++                + ++d+++++ga+GgR+D+++a    l+k   +++ +++l ++++ ++l++++k+     + ++                    +++l+p+g + +++ t+gl+++L+ +  l+fggl+s+sN+v++  v++
  MMETSP1061-20121228|8843_1  59 LVILNYrIPNKSLLLEHLWKTSsTRIAADGGANRLYeySKELIPDRIRGDLDSLDPTVRAYYESQNVSV-EQDFCQNSNDLDKALQVLVeenknadddnhetpspSPSFDRVVIYGAFGGRFDQEMASFVALYKWaPRFNGQMYLYSDETCAFLIPAQKECEIFLPFYDtqapdsvdgnnvpheigegpTCGLIPLGCPCESIVTSGLQWDLDGSIpLEFGGLVSTSNRVMKPIVKI 294
                 7899999****************************988899**********************999955.5789*****************************999999************************99778999**************987765444333334688889999*********************************987449*************998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1704.86
//
Query:       MMETSP1061-20121228|8844_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 575.10
//
Query:       MMETSP1061-20121228|8841_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.2  14.6      0.014   13.1   4.3    3.0  3  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
        1.2    5.4  15.0        1.9    4.7  10.4    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
        1.8    4.6  13.0        2.3    4.2   9.0    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   4.3     1e-05     0.014      12     122 ..      75     193 ..      59     200 .. 0.72
   2 ?    0.7   0.0     0.069        95     110     147 ..     244     289 ..     228     292 .. 0.63
   3 ?   -0.4   0.2      0.15   2.1e+02      20      44 ..     333     357 ..     315     381 .. 0.56

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1e-05
   TIGR03927  12 p.............sadsaaenngkldvkpnryekkdiEkntellqgeetelek.elftpeeqkkikkkkkkekkeqeelkdqLfsenatesntvkktkkqLFsseyeqtssssesteeeetekt 122
                 p             +a++aa+++ ++ ++ +r    ++E +t+  +   t+ +k +++ +    k++kkkk  k+  e   d + s   ++s++vkk+k +  ss++ ++s +s++++e+ +++ 
  MMETSP1061-20121228|8841_1  75 PgahghsripnahaAAAAAAAADHGTILDRQRHRGRRLEETTTTTS--TTSTTKsSKKSKSRGSKASKKKKGSKSG-EGDPDASMS---KSSKSVKKKKSETSSSSSSSKSEKSSKKSEKGSKSA 193
                 4666666666888789999999********************9988..7776675555555555555555555555.344444443...789999999999999999999999998886666654 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.069
   TIGR03927 110 sseste........eeetektssilllvliaglillliagiyflir 147
                 ss+s++         ++++ ++    ++l +g  ll+++ ++ l+r
  MMETSP1061-20121228|8841_1 244 SSSSSSslswssssSSSEKPWIASWAGILSIGGALLGVSLLVQLVR 289
                 3333323333333377788888888888888888888887776665 PP

  == domain 3    score: -0.4 bits;  conditional E-value: 0.15
   TIGR03927  20 nngkldvkpnryekkdiEkntellq 44 
                 ++++ d + ++ye   +E + e+ +
  MMETSP1061-20121228|8841_1 333 DEDDHDYDYDEYEYEIDELEGEYGR 357
                 3444555555555555555555544 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  10.4    0.0014       1.9      32     145 ..     103     215 ..      98     235 .. 0.57

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0014
   TIGR01642  32 srdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrr..rSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkppkyeavtavqakasqvansvpgiaqks 145
                 +r+R R rr  + +      +  +++++s+s+ s   ++++  +S + ++  s s+ss+s ++++s ++sss + k  ++k+s++  k +k  a t   a+   +++++p  a+++
  MMETSP1061-20121228|8841_1 103 DRQRHRGRRLEETTTTTSTTSTTKSSKKSKSRGSKASKKKKgsKSGEGDPDASMSKSSKSVKKKKSETSSSSSSSK--SEKSSKKSEKGSK-SAKTSKSAAPPPAPQPLPEKAERT 215
                 4666666665566666777777777777777777766665511555555666666666666666665555555555..3333333333333.333444444444455555555555 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   9.0    0.0017       2.3     147     318 ..     110     318 ..      95     387 .. 0.42

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0017
   TIGR00934 147 fklrrtktllereledrtetkvrtrtqvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrres..........rdidpedlyrsimmlqekheatakirdk..iseanslaaesdeesses..............................rriqekikrrlstssiekns..........q 318
                 + l+ t t++++  + ++ +k+++r   s + k++k ++  e     ++ k  +  sv+ ++++++++s  s++e+         ++kk+++++ s+k++k+  +           + ++ + +  i++  + +e+ a  +       + s+ ++s + ss+s                               r++ ++k r s+s   + +          +
  MMETSP1061-20121228|8841_1 110 RRLEETTTTTSTTSTTKSSKKSKSR--GSKASKKKKGSKSGEGDPDASMSKSSK--SVKKKKSETSSSSSSSKSEK---------SSKKSEKGSKSAKTSKSAAPppapqplpekAERTAVQPKAGIAEDGASDESLASDKGDvsA--SSSSSSSSLSWSSSSsssekpwiaswagilsiggallgvsllvqlVRMRRSVKTRKSRSAAANAVvasykpvgngE 318
                 2333333333333333333333333..222233333333333333333333333..22222222222222222222.........2222223333333333332200000000002222222222333333333333333333331..2222222222221113467899999999999999999998777776677777777776665555444455554441 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1343.58
//
Query:       MMETSP1061-20121228|8839_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1593.08
//
Query:       MMETSP1061-20121228|8845_1  [L=953]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (953 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 3399.61
//
Query:       MMETSP1061-20121228|8850_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1573.31
//
Query:       MMETSP1061-20121228|8847_1  [L=587]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (587 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2582.59
//
Query:       MMETSP1061-20121228|8853_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1946.84
//
Query:       MMETSP1061-20121228|8854_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1396.88
//
Query:       MMETSP1061-20121228|8849_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.51
# Mc/sec: 1798.67
//
Query:       MMETSP1061-20121228|8855_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2210.82
//
Query:       MMETSP1061-20121228|8859_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 539.96
//
Query:       MMETSP1061-20121228|8861_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 989.92
//
Query:       MMETSP1061-20121228|8857_1  [L=1408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.14s 00:00:00.77 Elapsed: 00:00:00.39
# Mc/sec: 4765.14
//
Query:       MMETSP1061-20121228|8866_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1061-20121228|8868_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 455.96
//
Query:       MMETSP1061-20121228|8867_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-10   36.9   0.0    6.2e-10   36.6   0.0    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.8e-08   30.9   0.0    5.1e-08   30.5   0.0    1.2  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.1e-07   29.3   0.0    1.4e-07   29.0   0.0    1.1  1  TIGR02415 23BDH: acetoin reductases
    6.1e-07   26.9   0.0    8.4e-07   26.4   0.0    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.6e-06   25.9   0.0      2e-06   25.5   0.0    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    3.6e-06   24.6   0.0    4.9e-06   24.2   0.0    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    5.6e-06   23.9   0.0    7.3e-06   23.5   0.0    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.3e-05   22.6   0.0    1.6e-05   22.2   0.0    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0027   14.7   0.0     0.0037   14.2   0.0    1.1  1  TIGR02685 pter_reduc_Leis: pteridine reductase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   1.4e-12   6.2e-10      78     194 ..      23     140 ..       2     158 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 1.4e-12
   TIGR01963  78 sldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalp.imkkqgwG..riiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiad 194
                 +ld ++ nAG  + +  e    ++ ++i ++n  +++ ++++ l  ++ +++ G  +++  +sv +lv+ ++ s+Y a+KH+l G+  +l  E    +i  + icPg ++t      + d
  MMETSP1061-20121228|8867_1  23 NLDCVILNAGRGQLKTAETTSSATTSEIFQINALAPISLSQKLLErGILNENKGrqQLVVTSSVGALVGLPLSSSYAASKHALHGYFNTLRAEKTWLDI--KLICPGTIDTSFHTSYVGD 140
                 6899************************************99995256666666336999*****************************9999888887..57*******9876666655 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   1.1e-10   5.1e-08      94     203 ..      24     133 ..       9     153 .. 0.73

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 1.1e-10
   TIGR03971  94 ldvvvanaGvlsygrafelseeqWdtvldvnlkG.vWktvkavvPali.erknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtam 203
                 ld v+ naG  +  +a   s+    ++ ++n    +  + k     ++ e+k+   ++++ssv +l++lp ++ yaa+kh l g  +tl  e +  +i++  i P ++dt+ 
  MMETSP1061-20121228|8867_1  24 LDCVILNAGRGQLKTAETTSSATTSEIFQINALApISLSQKLLERGILnENKGRQQLVVTSSVGALVGLPLSSSYAASKHALHGYFNTLRAEKTWLDIKL--ICPGTIDTSF 133
                 5666666666555555555555566666666433033333333333331555556899************************************999985..99*****986 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   3.1e-10   1.4e-07      63     216 ..       7     165 ..       3     195 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 3.1e-10
   TIGR02415  63 eveeaveqaveklGe..ldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGk..iinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreei..dekl.aelagkeigekleefsseikl 216
                 e++ea+++  + lG+  ld ++ naG ++ ++ ++ ++ + ++++++n  + +   q   e+   +++kG+  ++  +s+ + +g p  s y+++k+a++g+  t   e  k    +   +PG+++t+ + +   d+++ ++ ++k+ +++ +e +++ kl
  MMETSP1061-20121228|8867_1   7 EFDEALSDLETILGDhnLDCVILNAGRGQLKTAETTSSATTSEIFQINALAPISLSQKLLERGILNENKGRqqLVVTSSVGALVGLPLSSSYAASKHALHGYFNTLRAE--KTWLDIKLICPGTIDTSFHTSYvgDTDTvTKKHDKPSSKGKKEAAKSNKL 165
                 56666777777777533899******************************999999999988777777765338999*************************9998777..456677889********998862333331445558888887777766555 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.9e-09   8.4e-07      67     201 ..       8     145 ..       2     152 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.9e-09
   TIGR03206  67 vdaavaaaeealgp..vdvlvnnagwdvlkpflktekaewerliainltgalymhhavl.kgmverkagr..ivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpe 201
                  d a++  e+ lg    d ++ nag  +lk+   t  a+   +  in    + +   +l +g+++ ++gr  +v  +s  a vg    + yaa k  l  +  tl  e++     ++++cpg  dt++   ++++++   
  MMETSP1061-20121228|8867_1   8 FDEALSDLETILGDhnLDCVILNAGRGQLKTAETTSSATTSEIFQINALAPISLSQKLLeRGILNENKGRqqLVVTSSVGALVGLPLSSSYAASKHALHGYFNTLRAEKTWL--DIKLICPGTIDTSFHTSYVGDTDTVT 145
                 67788899999996337999***************************999999987766379**99999855678888999************************9998765..5678*********9999988876655 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   4.3e-09     2e-06      74     187 ..      21     135 ..       2     160 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 4.3e-09
   TIGR01830  74 lgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavl.kkmikkrsGr..iinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmte 187
                  +++d ++ nAG  + k +   ++   +e+ ++n  +   ++++ l + ++++ +Gr  ++  ssv +l+G +  + YaasK  l g   +l  E +  +i+   ++PG i+t +  
  MMETSP1061-20121228|8867_1  21 DHNLDCVILNAGRGQLKTAETTSSATTSEIFQINALAPISLSQKLLeRGILNENKGRqqLVVTSSVGALVGLPLSSSYAASKHALHGYFNTLRAEKTWLDIK--LICPGTIDTSFHT 135
                 3589******************************999999999877255778888865589999******************************98877765..79*******9754 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.1e-08   4.9e-06      65     188 ..       8     134 ..       2     147 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.1e-08
   TIGR01829  65 akaavakveaelG..pvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpvie.gmlergfGr..iinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemv 188
                   +a++++e+ lG  ++d ++ naG  + ++ +  +++  +e+ ++n  +  ++ ++++e g+l+ + Gr  ++  ssv  l G    + y+a+k  l+G+  +l +e++  ++    i+PG i+t   
  MMETSP1061-20121228|8867_1   8 FDEALSDLETILGdhNLDCVILNAGRGQLKTAETTSSATTSEIFQINALAPISLSQKLLErGILNENKGRqqLVVTSSVGALVGLPLSSSYAASKHALHGYFNTLRAEKTWLDI--KLICPGTIDTSFH 134
                 445555555555522689******************************9999**9999873678777777558999********************************987765..78*******9865 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.6e-08   7.3e-06      79     193 ..      22     136 ..       3     162 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.6e-08
   TIGR01832  79 gkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgk..iiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntea 193
                  ++d ++ naG  + + a+  s +   +++++n  a   lsq++ ++ + + +kg+  ++  +s+ ++ G    +sy+ask+a+ G   +l +e +   +++  i PG ++t    +
  MMETSP1061-20121228|8867_1  22 HNLDCVILNAGRGQLKTAETTSSATTSEIFQINALAPISLSQKLLERGILNENKGRqqLVVTSSVGALVGLPLSSSYAASKHALHGYFNTLRAEKTW--LDIKLICPGTIDTSFHTS 136
                 379*******************************999999999877666555454322666677777777777889***************999765..56677******9986554 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   3.6e-08   1.6e-05      90     238 ..      26     174 ..       3     183 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 3.6e-08
   TIGR01500  90 llinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkk..lkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqs.qv..reeasdpdvkalyrelkedgklvdpkrsaekllk 238
                 ++i naG  g++   e   + s    + ++ n  + ++l+ +ll    l+e +g +++vv  ss+ a+  ++  + Y ask a   +f+ L  e+   d+k +   pG +Dt   +  v   ++ +   +k   +++ke  k  + k s +++ +
  MMETSP1061-20121228|8867_1  26 CVILNAGR-GQLKTAET--TSSATTSEIFQINALAPISLSQKLLERgiLNENKGRQQLVV-TSSVGALVGLPLSSSYAASKHALHGYFNTLRAEKTwLDIKLI--CPGTIDTSFHTsYVgdTDTVTKKHDKPSSKGKKEAAKSNKLKMSINRCAR 174
                 55666664.44433333..455666788999**********9997433888899999998.5789******************************77777765..8******9864144112334444555566666666666555666666555 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   8.1e-06    0.0037     112     190 ..      40     115 ..      27     129 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.1e-06
   TIGR02685 112 kkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaale 190
                 + +  ++++e+f  na+ap+ l + + +r    + ++  ++l +   v a++ +pl   s y+ +k+al+G  ++   e
  MMETSP1061-20121228|8867_1  40 ETTSSATTSEIFQINALAPISLSQKLLERG-ILNENKGRQQLVVTSSVGALVGLPLS--SSYAASKHALHGYFNTLRAE 115
                 344556789******************998.4455555667888899********97..57**********87765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1341.89
//
Query:       MMETSP1061-20121228|8872_1  [L=878]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-83  277.4  10.8    2.3e-70  235.5   6.1    2.5  2  TIGR02037 degP_htrA_DO: peptidase Do
    1.3e-49  167.1  10.0    2.3e-42  143.2   5.0    2.1  2  TIGR02038 protease_degS: periplasmic serine peptidase DegS


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  235.5   6.1   1.1e-73   2.3e-70       4     260 ..     486     733 ..     483     748 .. 0.89
   2 !   41.2   0.0   1.1e-14   2.2e-11     255     341 ..     769     855 ..     758     870 .. 0.85

  Alignments for each domain:
  == domain 1    score: 235.5 bits;  conditional E-value: 1.1e-73
   TIGR02037   4 adlvekvapavVnisteeevkkreksselpeffeeffgdelpeaqaqqeeeeekveslGSGviisadgyvlTNnHvvdgakeikvklsdgrefkaklvgkDektDiAvlkieak.....kklpvvklgdsdklrvGdlvlAiGnPfglgetVtaGivSAlgrsglnked...yeeFIQtDaaiNpGNSGGpLvnlk.GeviGiNtaIlsksGgsvGigFAiPinlvkkvveqllkkgkvkrglLGvkiqevtkdlakslglekakG 260
                 +++ve+v p+vV i+te++v+k++      ++ ++ + ++              +++ GSG+i+s++g++lTN+Hvv+ga+++kv+l+dgr ++  + g+D+  DiAvlki ++     ++lpv++lgdsd+l+vG +v+A+G+P gl++tVt+GivS+++rs++  +    + ++IQtDaaiNpGNSGGpL++++ G+viGiN+aI +    + G +FAiPin v++++++l +++++++g++G ++++ t+d a++ + ++a G
  MMETSP1061-20121228|8872_1 486 SEVVEQVGPSVVRIDTETQVNKDRGG---YSYNSNPLDSN------------FVQQGQGSGLIFSSEGFILTNAHVVEGATKVKVTLTDGRVYSCVVTGTDDIVDIAVLKIVSNggppmTNLPVAELGDSDQLQVGKIVIAVGSPGGLDNTVTMGIVSGRERSSMMVGIphkLVNYIQTDAAINPGNSGGPLIDVEsGRVIGINAAIRA---HMEGTSFAIPINRVRDIMHDLSNGKEIRHGYIGCQLSTCTPDWARENNAKTAAG 733
                 789*************9999988763...22333333333............345688*****************************************************9887777789******************************************6544323359*********************955**********99...78999***************************************9998887766 PP

  == domain 2    score: 41.2 bits;  conditional E-value: 1.1e-14
   TIGR02037 255 lekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtlkpgkkvklkilRkgkekeikvtlkeaeeekassekse 341
                 + +  Galv +++ +sp + +Gl++ D+i ++  ++++sa+d ++ i  ++pg+++ ++ilR+g+ k i+v+ k+ ++++ + ++++
  MMETSP1061-20121228|8872_1 769 IPEVYGALVHKIYGKSPVHLGGLREQDIIQQIGSEPVRSASDASKWIDLATPGDNIPFTILRNGHVKVINVKPKDMSTTQREMQREK 855
                 56779*******************************************************************996555555554432 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.2   5.0   1.1e-45   2.3e-42      64     272 ..     512     726 ..     461     739 .. 0.79
   2 !   24.5   0.0   1.4e-09   2.9e-06     265     344 ..     760     839 ..     753     845 .. 0.91

  Alignments for each domain:
  == domain 1    score: 143.2 bits;  conditional E-value: 1.1e-45
   TIGR02038  64 rslsenslnklsi.qglGsGvimskeGyiltnkhvikkadqivvalqdGrvfeaelvGsdsltdlavlkiea......dnlptiPlnadrkpkvGdvvlaiGnPynlGqtitqGiisatGrngl...ssvGrqnflqtdaainaGnsGGalvns.aGelvGintlsfqkaadeeaeGinfaiPiklaskileklirdGrvir.GylGvdgedinslsaqll 272
                  s+++n+l++  + qg GsG+i s eG+iltn hv++ a ++ v+l dGrv+++ + G+d+  d+avlki +      +nlp+  l  + + +vG +v+a+G P  l  t+t+Gi+s   r+++    ++   n++qtdaain GnsGG l++  +G ++Gin++        + eG +faiPi+  ++i++ l  +G+ ir Gy+G +    ++  a+  
  MMETSP1061-20121228|8872_1 512 YSYNSNPLDSNFVqQGQGSGLIFSSEGFILTNAHVVEGATKVKVTLTDGRVYSCVVTGTDDIVDIAVLKIVSnggppmTNLPVAELGDSDQLQVGKIVIAVGSPGGLDNTVTMGIVSGRERSSMmvgIPHKLVNYIQTDAAINPGNSGGPLIDVeSGRVIGINAAI-----RAHMEGTSFAIPINRVRDIMHDL-SNGKEIRhGYIGCQLSTCTPDWAREN 726
                 35667766665552689*****************************************************76223333678888888999********************************99443356678********************7369*****9753.....45689****************97.57777766****99877777666655 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 1.4e-09
   TIGR02038 265 nslsaqllgledlrgivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelrPgskvlvtvlrkgkqlelpv 344
                 ns s+    ++++ g +v ++  ++P    gl+++d+i ++ +++v sa +  + +   +Pg  + +t+lr+g+  +++v
  MMETSP1061-20121228|8872_1 760 NSNSNSNAVIPEVYGALVHKIYGKSPVHLGGLREQDIIQQIGSEPVRSASDASKWIDLATPGDNIPFTILRNGHVKVINV 839
                 55566666799**************************************************************9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (878 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.31
# Mc/sec: 3738.27
//
Query:       MMETSP1061-20121228|8870_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1163.90
//
Query:       MMETSP1061-20121228|8865_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.3    4.5  13.7       0.36    9.0   1.3    3.1  3  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.008        33      56      91 ..       9      59 ..       4      72 .. 0.58
   2 ?   -0.9   0.5      0.11   4.5e+02      83      90 ..     149     159 ..     122     171 .. 0.40
   3 ?    9.0   1.3   8.7e-05      0.36      73      95 ..     279     301 ..     256     312 .. 0.54

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.008
   TIGR03685 56 kaaaapvaaaaaaaaaaeaaeeekeeee...............eeeeekee 91
                  aaa+v+a + a+a++++++++k   +               + e+ +ee
  MMETSP1061-20121228|8865_1  9 ALAAAVVSANPFAPAKSANSAKTKYMSKlmrsaratsnsqlgrKLEDGEEE 59
                445666666667777777777766665566666666666665433333333 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.11
   TIGR03685  83 e...eeeeeke 90 
                 +   +e+ee++
  MMETSP1061-20121228|8865_1 149 NcqwDEDEEQD 159
                 12112222222 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 8.7e-05
   TIGR03685  73 eaaeeekeeeeeeeeekeeeeee 95 
                  a+e+e+e+eee++e+++ eeee
  MMETSP1061-20121228|8865_1 279 PAEEDENEDEEEQDEDEDAEEEE 301
                 33333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1984.55
//
Query:       MMETSP1061-20121228|8869_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-12   46.0   0.0      2e-12   45.1   0.0    1.3  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    1.8e-09   35.3   0.0    7.9e-08   29.9   0.0    2.2  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    7.4e-07   26.5   0.0    1.2e-06   25.8   0.0    1.2  1  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
    1.9e-05   21.8   0.0    3.6e-05   20.9   0.0    1.4  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    6.5e-05   20.3   0.0    0.00022   18.5   0.0    1.7  2  TIGR03611 RutD: pyrimidine utilization protein D
     0.0024   15.4   0.0     0.0088   13.5   0.0    1.8  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
  ------ inclusion threshold ------
      0.044   11.0   0.0       0.12    9.5   0.0    1.7  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   3.4e-15     2e-12      22     131 ..     121     235 ..     115     266 .. 0.86

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 3.4e-15
   TIGR01250  22 egekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsd.....eklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgliissmla 131
                 e+  ++l+ lHG      + + +l+ l+   ++v++ D LG g S++P +++     +     d+fv+ le+ r   + dk+ l g+S+Gg  a++Ya +y+qh+  +i+ s+l 
  MMETSP1061-20121228|8869_1 121 ESTTVPLINLHGYMNAGAYFYRNLAGLVGYYRNVYSVDMLGFGLSSRPPFNEvndneNIESAEDYFVESLEAWRAVNNIDKMILGGHSFGGYVAVAYAERYPQHVDKIILLSPLG 235
                 56689*********999999********99******************9988877643335679*********************************************998864 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.3e-10   7.9e-08       4     103 ..     126     232 ..     123     248 .. 0.74
   2 ?    3.0   0.0     0.021        13     215     248 ..     387     420 ..     385     422 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.3e-10
   TIGR03695   4 vlvlLHGflgskedwqalieeleekf.svlalDLpgHGkskslkeke...akdfeeaaqellkelle..kl.kiekviLvGYSlGGRialalaleaperlegliles 103
                  l+ LHG++  ++ + +  + l   + +v  +D++g G s+ +  +e   ++++e+a ++ +++l++  ++ +i+k+iL G S GG +a+a+a ++p+++ ++il s
  MMETSP1061-20121228|8869_1 126 PLINLHGYMNAGAYFYRNLAGLVGYYrNVYSVDMLGFGLSSRPPFNEvndNENIESAEDYFVESLEAwrAVnNIDKMILGGHSFGGYVAVAYAERYPQHVDKIILLS 232
                 6999********9987777777665515668*******997665444000455555556666655532133489******************************987 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.021
   TIGR03695 215 emqkllpalklevieeaGHnihlenpeafakile 248
                 ++q+ +p++++ +++++GH + l+np+  +k++ 
  MMETSP1061-20121228|8869_1 387 QSQAFTPNVDVYLVPNSGHLLILQNPDLVNKCVI 420
                 567789********************99998875 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0     2e-09   1.2e-06      44     139 ..     145     238 ..     118     267 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2e-09
   TIGR03343  44 ggwsnyyrniealvdagyrvilkdapgfnksdevvmdeqrglvnaravkglmdaldiekahlvgnsmggatalnfaleypdrlgklilmgpgglgk 139
                 +g   yyrn+ ++   g+   l   p fn  ++    e        ++     + +i+k  l g s+gg  a+ +a  yp+ ++k+il+ p g+ +
  MMETSP1061-20121228|8869_1 145 AGLVGYYRNVYSVDMLGFG--LSSRPPFNEVNDNENIESAEDYFVESLEAWRAVNNIDKMILGGHSFGGYVAVAYAERYPQHVDKIILLSPLGVND 238
                 5777899999999999996..6788999987666665666666677889999999************************************99865 PP

>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   6.1e-08   3.6e-05      75     126 ..     180     231 ..     117     249 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 6.1e-08
   TIGR01249  75 enttwdlvadieklreklkikkWlvfGGsWGstlalayaqkhPekvtklvlr 126
                 e + + +v  +e  r   +i k  + G s+G  +a+aya ++P++v+k++l 
  MMETSP1061-20121228|8869_1 180 ESAEDYFVESLEAWRAVNNIDKMILGGHSFGGYVAVAYAERYPQHVDKIILL 231
                 22345689999**************************************985 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.7e-07   0.00022      21     112 ..     132     232 ..     116     257 .. 0.79
   2 ?   -1.6   0.0      0.51     3e+02     224     252 ..     392     420 ..     385     422 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.7e-07
   TIGR03611  21 GLGGsgsywapqlevleqefr.vvvyDhrGtgrsp....eelaedysiaalaadvlellda....ldiekahvvGhalGgliglelalrkperlaklvlin 112
                 G    g+y+  +l+ l  ++r v   D  G g s+    +e++++ +i+   +  +e l+a     +i+k+ + Gh+ Gg++++  a r+p++++k++l+ 
  MMETSP1061-20121228|8869_1 132 GYMNAGAYFYRNLAGLVGYYRnVYSVDMLGFGLSSrppfNEVNDNENIESAEDYFVESLEAwravNNIDKMILGGHSFGGYVAVAYAERYPQHVDKIILLS 232
                 6667899*********99998355789999999983333479999999988887777776522225899****************************9975 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.51
   TIGR03611 224 LPdaelklleyGghasnvtdpetfnelll 252
                  P+ ++ l++  gh   + +p+ +n+ ++
  MMETSP1061-20121228|8869_1 392 TPNVDVYLVPNSGHLLILQNPDLVNKCVI 420
                 59999******************999875 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.5e-05    0.0088       8      97 ..     128     232 ..     122     248 .. 0.57

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.5e-05
   TIGR01738   8 vLihGWglnaevfadlveeLsahf.tlslvDLPGyGdsa.....e.lralslaev....aeai.....laqapakaiwlGWsLGGLvalhlalthpdkvrsLvlva 97 
                 + +hG+   ++ f      L   + +++ vD+ G+G s+     e     +++ +    +e++     +++++ k i+ G s GG va+  a ++p++v +++l++
  MMETSP1061-20121228|8869_1 128 INLHGYMNAGAYFYRNLAGLVGYYrNVYSVDMLGFGLSSrppfnEvNDNENIESAedyfVESLeawraVNNID-KMILGGHSFGGYVAVAYAERYPQHVDKIILLS 232
                 5567776555554444444444441577888888876431111111112233333111122221111012233.4667789*********************9985 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00021      0.12      75     110 ..     196     231 ..     127     247 .. 0.78
   2 ?   -2.4   0.0      0.94   5.5e+02     223     246 ..     396     419 ..     389     421 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00021
   TIGR02427  75 algiekaavcGlSlGGliaqaLaarrpdrvealvls 110
                   +i+k+ + G S GG +a a a r p++v++++l+
  MMETSP1061-20121228|8869_1 196 VNNIDKMILGGHSFGGYVAVAYAERYPQHVDKIILL 231
                 457899999************************996 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.94
   TIGR02427 223 rfaeieeaaHlpnleqpeafaall 246
                  +  +++++Hl  l++p+ +++ +
  MMETSP1061-20121228|8869_1 396 DVYLVPNSGHLLILQNPDLVNKCV 419
                 556788899999999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2045.83
//
Query:       MMETSP1061-20121228|8874_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 590.81
//
Query:       MMETSP1061-20121228|8873_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 2191.02
//
Query:       MMETSP1061-20121228|8878_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|8879_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 967.92
//
Query:       MMETSP1061-20121228|8876_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       954  (0.232569); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.62u 0.19s 00:00:00.81 Elapsed: 00:00:00.57
# Mc/sec: 1533.80
//
Query:       MMETSP1061-20121228|8877_1  [L=1539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.13s 00:00:00.73 Elapsed: 00:00:00.50
# Mc/sec: 4062.62
//
Query:       MMETSP1061-20121228|8880_1  [L=883]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (883 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 3149.90
//
Query:       MMETSP1061-20121228|8875_1  [L=1004]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-66  220.5   1.0    1.6e-65  219.6   0.0    1.8  2  TIGR01069 mutS2: MutS2 family protein
    5.7e-26   88.9   0.1    1.3e-25   87.7   0.0    1.6  1  TIGR01070 mutS1: DNA mismatch repair protein MutS
  ------ inclusion threshold ------
       0.23    9.7   5.4        0.5    8.6   0.1    3.8  4  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1     0.098   1.3e+02     511     564 ..     122     176 ..     118     184 .. 0.78
   2 !  219.6   0.0   1.2e-68   1.6e-65     229     615 ..     412     827 ..     408     872 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.098
   TIGR01069 511 eeinkviekleekekeleekaeelekllke.leklkkeleqkakelkererklkk 564
                 ++i++ i++  ++++ +    + ++++ k+ +++  + ++    +l++rer   +
  MMETSP1061-20121228|8875_1 122 TQIIEEIARHTATRRGYDALLSTVQQKQKQqQNYSDRRVSLLLSNLQQRERYGVT 176
                 6788888899999999999999988776651567889999999999999987665 PP

  == domain 2    score: 219.6 bits;  conditional E-value: 1.2e-68
   TIGR01069 229 nklaqlkrkeeeeiekilrqlsekvaeylleLeellkeltelDllqararyakavkaefpeisttkvielkearHPlLkesk.....vvpvtlel....ksekrviiiTGpNtGGKTvtLKtlgllalmaksgipipakesse...lplFeeifadIgDeQsieqnlSTFsshmkniseiLkklde..................nsLvllDElgaGTDpdegsaLaislLeklakqnalvlitTHykelkalkyeseevenasvefDeet....lsPtYklligvpGrSyAfeiaqrl..glpseiiekAkeklgeekeeinkviekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelekeaqealkaakkeveeiirelkekkiekakekkatellkklkeekakv 615
                 + l  ++ ++ee   +i+  l++kv    + L++ l ++ +lD++ a+a ya  ++++ p ++t + i ++++ HP+L  +      vv+++l l    +se r ++i GpN GGKT+ +K+ gl++++ k g+pip++e+se   + +F+eif+++gD+Qs+ +  ST++s +   + +++ ++e                    LvllDElg+GTDp+ g a a ++Le+l+ + ++v++tTH ++lkal+y+++++  a+v++D        +P ++l +g +G+S A+  a+r    lp++++ +A + + +  e      e+   ++   +  ++++e+ l+  ++    le+ a++   r r+    l ++++  l    + +e+ +++lk + +  + e    ++l +lk  ++kv
  MMETSP1061-20121228|8875_1 412 KDLVAIRAEIEESTAQIVASLAQKVVGASKSLDHGLGIMARLDVIVAKAAYASSLNGVVPLVETRGEISVENFLHPVLLRTMgdrdrVVAIDLRLssvvDSEERALVISGPNGGGKTLSMKSFGLVSILTKLGVPIPVEEGSErprVDYFDEIFVNVGDQQSVLDGESTWTSILNSCASMIQTIEEqqqqqqqqqqqqkegneiSHLVLLDELGTGTDPESGGAVAQAVLEELIAKSCRVVVTTHLPRLKALSYDDDKIGCAAVLLDYSDqstfQRPSFRLEYGLIGESHALGAASRCvpSLPESVLSRASDLMDDIDE----T-EQNGTHKSYIQALTSSMEEQLERSKVATVSLENDAADST-RCRQAMVSLARSYECHLDRRLEGLESTFQKLKANGELSDYELV-GQMLSELKAVRKKV 827
                 5688899********************************************************99*************988778889*****9873333689***************************************98333569**********************************999*****************99************************************************************98543112358*********************8446*********998854333....2.333333334444556677777777777777777766654.4444445566677777777777777777777665544433333.34444444333333 PP

>> TIGR01070  mutS1: DNA mismatch repair protein MutS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   9.3e-29   1.3e-25     487     804 ..     403     753 ..     340     784 .. 0.76

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 9.3e-29
   TIGR01070 487 ilpelkekedkvleakekalalekelfeelrekvkkeleaLqeaakalaelDvlaalaevaetlnyvrPefgdeselrireGrhpvvekvl..keefvandlela....dnrelllitGPnmsGkstylrqtaliallaqiGsfvPaeka....elpliDriftriGaaDDLasGrstf.........mvemeevanilkeaten........s.LvLlDevGrGtstyDGlalaqaiaealhekiraltLfathYfeLtaLeeklekl..knvhvaaleengtvvflhkvkeGaasksYGlavaa..laglPkeviararekLkeleasssks.eaplreaqkke.teqls 804
                 +    ke++++++  ++++ +   ++   l +kv    ++L +   ++a lDv++a a  a+ ln v P    + e+++++  hpv  + +  ++  va dl+l+     + + l+i GPn +Gk   ++   l+++l ++G  +P e+     ++  +D+if  +G    +  G st+         m+   e ++  ++  ++        s LvLlDe+G Gt    G a+aqa+ e l     +  + +th   L aL+ + +k+  + v ++  ++        +++ G   +s+ l  a   +  lP++v++ra +++ +++++ ++  +++ ++a +++ +eql+
  MMETSP1061-20121228|8875_1 403 VARGGKEFDKDLVAIRAEIEESTAQIVASLAQKVVGASKSLDHGLGIMARLDVIVAKAAYASSLNGVVPLVETRGEISVENFLHPVLLRTMgdRDRVVAIDLRLSsvvdSEERALVISGPNGGGKTLSMKSFGLVSILTKLGVPIPVEEGserpRVDYFDEIFVNVGDQQSVLDGESTWtsilnscasMIQTIEEQQQQQQQQQQqqkegneiShLVLLDELGTGTDPESGGAVAQAVLEELIA-KSCRVVVTTHLPRLKALSYDDDKIgcAAVLLDYSDQSTFQRPSFRLEYGLIGESHALGAASrcVPSLPESVLSRASDLMDDIDETEQNGtHKSYIQALTSSmEEQLE 753
                 44556899999999*****************************************************************************98899******986222257899********************************876422227999********************9333333333443333322222111111222223325**************************999.7999*************9777776214555555555544444679999*99888877777533889**************998885543023344444444223322 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.1      0.29     4e+02      47      89 ..     198     241 ..     190     249 .. 0.49
   2 ?    8.6   0.1   0.00036       0.5      56     103 ..     308     355 ..     298     357 .. 0.76
   3 ?   -0.9   0.0      0.33   4.5e+02      76      91 ..     597     612 ..     580     623 .. 0.47
   4 ?   -1.2   0.0      0.39   5.4e+02      28      67 ..     941     980 ..     923    1003 .. 0.64

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.29
   TIGR03685  47 dvdieeai.ekaaaapvaaaaaaaaaaeaaeeekeeeeeeeeek 89 
                 dv  e a+ e+a+++  ++  aa   +++ +++ ++++++++++
  MMETSP1061-20121228|8875_1 198 DVRSEYALvEEATLTLSSTKKAALGGDDNGNDNGNDDNDNNDND 241
                 55555544155555555555555444444444443333222222 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00036
   TIGR03685  56 kaaaapvaaaaaaaaaaeaaeeekeeeeeeeeekeeeeeealegLgaL 103
                 +a+ + +++ a+  +a +++++++++e++++e+++++e+e +++L ++
  MMETSP1061-20121228|8875_1 308 EATRTWAPTLAQMGSAIDNNNDNNDDENNDDENNDDNEKEGVNSLQQV 355
                 556666667777777777777778888899999999999999999876 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.33
   TIGR03685  76 eeekeeeeeeeeekee 91 
                 e++++++++++++ke 
  MMETSP1061-20121228|8875_1 597 EQQQQQQQQQQQQKEG 612
                 2222222222222222 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 0.39
   TIGR03685  28 aaGvevdearvKalvaaLedvdieeaiekaaaapvaaaaa 67 
                 a+ ++    r+ +l+++L+ v   +  ++ a++ +++  +
  MMETSP1061-20121228|8875_1 941 ATSISNSKQRINSLLSTLDSVSAKNTGSRKATTNATSKKG 980
                 6677788889999999999998887766555554444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       318  (0.0775232); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.55u 0.13s 00:00:00.68 Elapsed: 00:00:00.43
# Mc/sec: 3081.79
//
Query:       MMETSP1061-20121228|8883_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1275.89
//
Query:       MMETSP1061-20121228|8884_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|8882_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1669.95
//
Query:       MMETSP1061-20121228|8891_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 590.81
//
Query:       MMETSP1061-20121228|8889_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.44
# Mc/sec: 965.92
//
Query:       MMETSP1061-20121228|8888_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-22   76.7   3.4    1.1e-21   75.3   1.6    1.9  2  TIGR01933 hflK: HflK protein
    4.7e-05   20.2  10.5    0.00036   17.3   0.0    3.0  3  TIGR01932 hflC: HflC protein


Domain annotation for each model (and alignments):
>> TIGR01933  hflK: HflK protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.3   1.6   5.3e-25   1.1e-21       3     215 ..      87     308 ..      85     323 .. 0.83
   2 !    9.6   0.7   5.7e-05      0.12     169     221 ..     273     325 ..     268     368 .. 0.69

  Alignments for each domain:
  == domain 1    score: 75.3 bits;  conditional E-value: 5.3e-25
   TIGR01933   3 iikeaergvvlrfGkysrvlepGlnlkipfieevykvnvekvrelake.glmltkDenivevelnvqYkisdpakylfkvenaedslrqatdsalreviGdssldeiltegRsairedtkeelneildsydlGitvvdvnlqsarpPeevkeAFddviaArede..erlineaeayanev.........vPkarGeAqriieeAkgYkeerineAkgdverfekl 215
                 i+ +  + vv rfGk++++ e+G  l ip+++++  v   + r++  e  + +t+D+  vev+ n   k +dp+k  +   n+  s+ q ++sa+r+ iG+++ldeil + Rs ++  +k  l+e   +   G++v   ++ ++ p ++++ A d   aA  d+  + l+ e+ ++ ++          + + +G+  ++++eA++ k+++++eA+g++e ++  
  MMETSP1061-20121228|8888_1  87 IVPQGYKFVVERFGKLHSIEESGWFLAIPLVDQIAYVIDVRERAIDIEpQAAITRDNVSVEVSGNLFVKFQDPEKAAYGALNPLYSVTQHAQSAMRSAIGEMELDEILHN-RSRLNALIKGGLQEA--ALPWGLEVRRYEITEITPDHQIRIAMDKQAAAERDRreNVLRAEGDKERAQLtsegvkislTNESEGNLVKVKNEAEATKQRILLEAEGQAEAIRLT 308
                 555666789************************98877667777765515679*******************************************************98.**************7..56789*********************99999988762134556666665554111111111457899**********************99987654 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 5.7e-05
   TIGR01933 169 ineaeayanevvPkarGeAqriieeAkgYkeerineAkgdverfekllaeykk 221
                  ne+e +  +v  +a+   qri+ eA+g +e++ + Ak+++e +e + ++ +k
  MMETSP1061-20121228|8888_1 273 TNESEGNLVKVKNEAEATKQRILLEAEGQAEAIRLTAKAQAEALELITNQINK 325
                 67778888888888888888888888888888888888888888888887765 PP

>> TIGR01932  hflC: HflC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.8e-07   0.00036      20     144 ..      85     198 ..      79     212 .. 0.84
   2 ?    1.5   5.0     0.011        23     237     271 ..     280     314 ..     216     327 .. 0.75
   3 ?   -3.4   0.0      0.33   6.9e+02     242     280 ..     365     403 ..     346     405 .. 0.61

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.8e-07
   TIGR01932  20 lfvikEgergiilrfGkilkddndkalvyeaGLhvkiPliesvk.ildakiqtvDgeadrivtkekkdlivdtyikWrieDfkkyYlatgggnisaAevlikrkiedrlRseigklelkeivrssr 144
                 + +++ g + ++ rfGk+   ++       +G  + iPl++++  + d +   +D e++  +t+++  ++v      + +D +k   a g   + +    + +  ++++Rs ig++el+ei+++  
  MMETSP1061-20121228|8888_1  85 FNIVPQGYKFVVERFGKLHSIEE-------SGWFLAIPLVDQIAyVIDVRERAIDIEPQAAITRDNVSVEVSGNLFVKFQDPEKA--AYG---ALNPLYSVTQHAQSAMRSAIGEMELDEILHNRS 198
                 56899999999******998887.......9***********973679999******************************9983..444...2334445788999***************98754 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.011
   TIGR01932 237 aeelrakaekEvvkiLseAereariikgegdaeaA 271
                   +++ +ae  +++iL eAe +a+ i+ ++ a+a 
  MMETSP1061-20121228|8888_1 280 LVKVKNEAEATKQRILLEAEGQAEAIRLTAKAQAE 314
                 34667778888888888888888888877766654 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 0.33
   TIGR01932 242 akaekEvvkiLseAereariikgegdaeaAklysdaysk 280
                 a + + vv + s  +++a i  g+    a kl  +a ++
  MMETSP1061-20121228|8888_1 365 ALLSQAVVATQSATQANASISDGTDSNVATKLLDEAVKQ 403
                 444555555566666666666666666666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 2164.62
//
Query:       MMETSP1061-20121228|8894_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.46
# Mc/sec: 832.11
//
Query:       MMETSP1061-20121228|8896_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1061-20121228|8893_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1331.89
//
Query:       MMETSP1061-20121228|8899_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-06   22.3  97.9    0.00026   16.7  45.4    2.2  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    7.9e-06   21.6  87.6    0.00078   15.0  14.0    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7  45.4   1.3e-07   0.00026     230     925 ..      16     274 ..       2     280 .. 0.39
   2 !   11.1  16.8     6e-06     0.012     322     498 ..     288     463 ..     282     477 .. 0.61

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-07
   TIGR02168 230 lvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrle.eleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelrek 925
                 ++ +++e+k++l++ ++ l+++++++++l+++l++l+eel++ ++ek+ele++  +l+++l+++++e+++  +e+ ++  ++eq +++ +e  e+l ++ +++   e+   + ++ l+++++e+e +  e +e+ +  e+l++++     +el++++++ +e+ ++la+++ae e l+++l q+  ++++l+q++e+  +++e +                                                                                                                                                                                                                                                                                                                                                                                                                                                     ++ +++ eel+++ a +++++a+++++ +el++++ e+ ++++ +++el++++++
  MMETSP1061-20121228|8899_1  16 SAVKIQEQKQKLQQQQQVLTSKNKTIQSLQSQLAKLKEELAQGETEKQELEQKTSTLDEKLKATEREVEAQAKELLRAGGEMEQIRTNAKEEREDLLDDHEDEM--EDLQRDHQAALDKMRQEYETTIGEWKERYESEEALRQQEGgHSIRELRDANQREKEALKKLAEITAEKEALRTKLDQVVGHETKLQQQVESSLESAETVA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AREQRAREELDEATALHAKQMAQRQAREAELEQTILEMGSALTLAKQELQQQKTA 274
                 33344444444444444444444444444444444444444444444444444444444444444444444444444444444444444433333322222211..1111112222222222222222222222222222222222022234444444444444444444444444444444444444444444444444444444....................................................................................................................................................................................................................................................................................................................................................................................................................................................4444444444444444444444444444444444444444444444444444444 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 6e-06
   TIGR02168 322 eeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkle..eaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesles 498
                 +eq++ ++ ++ +++e++++++eel++++ +l+ + ++ e+    ++el + ++e e+e+ +++++ +++ +++a+l++++ rl++++ +l+++  r  ++++  e++    ++++    +++    +++ele +++e  +l e+l +++   ++a++++ +++ +l+ ++ar++  e+
  MMETSP1061-20121228|8899_1 288 QEQQQGADGSRSQYKEQFEQVAEELDSVRVQLTMETQRREA---LQQELADVSREREQEFSSAQAREHQHDRKVADLESTIHRLQDSMRALQQEPGRSGSSNSVMESEYIagKTNSLTGVVSKPQVASKRELEAAKQEITHLSEELLRQQTLAKNAKSEVLTLKGRLRAANARADEAEK 463
                 45555666666777777777777777777776666666555...667777777777777777777777777777777777777777777777777776666655544433002222222333334445556666666666666666666666666666666666666666666655444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2  41.3   2.6e-06    0.0054     695     938 ..      10     254 ..       3     278 .. 0.85
   2 !   15.0  14.0   3.8e-07   0.00078     314     491 ..     287     463 ..     281     481 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.6e-06
   TIGR02169 695 qselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnkle..lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelsele 938
                  s ++    +++e ++kl+++++ +  ++k ++ l+++ +klke+l++ e++ +ele++    +e+lk+ e e+e++ ++l +   ++e++  + +ee+ + ++++ +++e+  ++ +a+l+++ +e +      ++ +++ee   +qe  + + e ++++++e e+lk+ l+e+ +e e l+ ++ +   +  +L++++e   +  + +  +++ + +e++++    +++ a+++a e el++  
  MMETSP1061-20121228|8899_1  10 NSSKNDSAVKIQEQKQKLQQQQQVLTSKNKTIQSLQSQLAKLKEELAQGETEKQELEQKTSTLDEKLKATEREVEAQAKELLRAGGEMEQIRTNAKEEREDLLDDHEDEMEDLQRDHQAALDKMRQEYETTIgeWKERYESEEALRQQEGGHSIRELRDANQREKEALKK-LAEITAEKEALRTKLDQVVGHETKLQQQVESSLESAETVAAREQRAREELDEATALHAKQMAQRQAREAELEQTI 254
                 5566667778999**************************************************************************************99999999999999999999999999888877544888999999999999999999999999999999998.9****************************9999999999999999999888887777777777777666665433 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 3.8e-07
   TIGR02169 314 keeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleee.laelkaelerieek.iaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelseler 491
                  +e+++ a+  + +++++ ++++ee+++++ +++ e ++re+l++el++   e+e+ ++ +++ ++++++   ++++l+  + +l++ +  l++e  r       +e+e +a   + l+++ +k + + + ele++++ei +  ++l + +   ++a++e+  lk  l++ + +  e+e+
  MMETSP1061-20121228|8899_1 287 GQEQQQGADGSRSQYKEQFEQVAEELDSVRVQLTMETQRREALQQELADVSREREQEFSSAQAREHQHDR---KVADLESTIHRLQDSMRALQQEPGRSGSSNSVMESEyIAGKTNSLTGVVSKpQVASKRELEAAKQEITHLSEELLRQQTLAKNAKSEVLTLKGRLRAANARADEAEK 463
                 5789999******************************************999999999999988887775...67777888888999999999999998776655554416677788887766526688899999999999999999999999999999999999999999999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       656  (0.159922); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        29  (0.00706972); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.42u 0.18s 00:00:01.60 Elapsed: 00:00:00.89
# Mc/sec: 874.98
//
Query:       MMETSP1061-20121228|8902_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 437.96
//
Query:       MMETSP1061-20121228|8897_1  [L=846]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   10.5   0.0      0.076    9.6   0.0    1.4  1  TIGR02751 PEPCase_arch: phosphoenolpyruvate carboxylase


Domain annotation for each model (and alignments):
>> TIGR02751  PEPCase_arch: phosphoenolpyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   1.9e-05     0.076     319     403 ..     752     837 ..     725     844 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 1.9e-05
   TIGR02751 319 lveiiekyakrYqkiieklaetinriakllPkrRdRklhvGlfGYsRsvgeveLPRaIk...ftgalYsiGl.PpeliGigeLseleek 403
                  +++   +++rY+  +e+l++t++r   +l +rR+R++  G +       +v+L   +    f+  +  +G+ P+ + Gi++L+el+ +
  MMETSP1061-20121228|8897_1 752 KIAVLTAITDRYSAAVEELITTVKRTEVALQNRRTRRVASGGVSDGD---KVKLQLFLDfeaFCRDMREVGVnPSSVSGISKLKELTKD 837
                 567788899****************************9988665444...444444443001566677888856677788888887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (846 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 3190.37
//
Query:       MMETSP1061-20121228|8901_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1464.45
//
Query:       MMETSP1061-20121228|8898_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046    9.2  38.3      0.067    8.6  26.6    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.76    5.2  36.0        1.3    4.4  24.9    1.2  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        6.5    3.4  24.5         10    2.7  17.0    1.3  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  26.6   4.9e-05     0.067     260     467 ..     144     348 ..     140     357 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 4.9e-05
   TIGR02169 260 eieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlaka.eaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlek 467
                 ei +  ++  +i +k+ee   ki+++ +  ++ + e + e + e e ++++++++e++ +  e+r++ka eae ++ +e++e+ + +++e+  + ++ ++e++++ +e+e++r+e ++++++a e  ++ k+l  +l +l+   ++ ++++       kr+    + ++ +++ ++e+  ++ e ++++ ++i++ eq+  qlk++l++
  MMETSP1061-20121228|8898_1 144 EIRKHMETERRIVRKIEEERLKIDEECSRTANILGELVLECNREAETIRKQQRAEEDRRKAEEDRVRKArEAEEERAREKAEKAAAALREKTEQERAAQKEMEARVAEREQKRKEEAAEAAKATEYIDKAKKLVGQLVQLRASVEPFEKNKT----VGKRRLGMKKMANGKVNTLNESALKIREVATQISNAIAQYEQEDAQLKQQLQQ 348
                 566666777789999*******************************************99999998887256888999999*******************************************************************4433....33444455566788999999999999999999999999999999999998875 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4  24.9   0.00093       1.3     266     876 ..     156     345 ..     139     359 .. 0.24

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.00093
   TIGR02168 266 eeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslna...elerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleee 876
                   ++ee rl+          +++e  ++++ + +l  e ++  e      ++++++ee+++++e+++ ++++e++e +   e++++  ++l+++ e+++a+++e+e+r++e e++ +e+++e a+++e ++++++   +l +l+a++e  e++++  k++    +k                                                                                                                                                                                                                                                                                                                                                                                                                        +++ ++++l+e++ + +e +++++++i+++e+e ++l+++
  MMETSP1061-20121228|8898_1 156 VRKIEEERLK----------IDEECSRTANILGELVLECNREAET----IRKQQRAEEDRRKAEEDRVRKAREAEEER-AREKAEKAAAALREKTEQERAAQKEMEARVAEREQKRKEEAAEAAKATEYIDKAKKlvgQLVQLRASVEPFEKNKTVGKRRL-GMKK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MANGKVNTLNESALKIREVATQISNAIAQYEQEDAQLKQQ 345
                 2222222222..........1111111111111111111111111....11222222222222222222222222111.2222222233333333333333333333333333333333333333332222222111122222222222222221111111.1111........................................................................................................................................................................................................................................................................................................................................................................................................................1111111222222222222222222222222222222222 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7  17.0    0.0076        10      89     248 ..     191     351 ..     178     365 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0076
   TIGR01843  89 qvlaleaevarlraeanseeaiefpdillsae.d.avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelr 248
                    +++ae+ r +ae +    +  ++++ + e + ++a+++ e++++ ++ +++++a +++ e+++k++ ae++++++ + ++++ +  + +   ++++ ++++ v + +l   ++  +   + l+e+  ++ +++++++++ +++++ ++++++++++   
  MMETSP1061-20121228|8898_1 191 IRKQQRAEEDRRKAEEDRVRKAREAEEERAREkAeKAAAALREKTEQERAAQKEMEARVAEREQKRKEEAAEAAKATEYIDKAKKLVGQLVQLRASVEPFEKNKTVGKRRL-GMKKMANGKVNTLNESALKIREVATQISNAIAQYEQEDAQLKQQLQQGTP 351
                 456789999999999888766655555555453468889999999999999999****************************************************99875.666666777789********************************998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       524  (0.127743); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.64u 0.16s 00:00:00.80 Elapsed: 00:00:00.49
# Mc/sec: 2033.71
//
Query:       MMETSP1061-20121228|8905_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 539.43
//
Query:       MMETSP1061-20121228|8907_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 335.97
//
Query:       MMETSP1061-20121228|8908_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.17
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|8906_1  [L=816]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.50
# Mc/sec: 2154.06
//
Query:       MMETSP1061-20121228|8913_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 539.96
//
Query:       MMETSP1061-20121228|8916_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-26   91.7   0.0    3.6e-26   90.3   0.0    1.6  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    1.7e-06   25.3   0.0    3.3e-06   24.4   0.0    1.4  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
      6e-05   20.5   0.0    9.2e-05   19.9   0.0    1.2  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
     0.0018   15.4   0.0     0.0034   14.6   0.0    1.5  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
  ------ inclusion threshold ------
      0.017   12.5   0.1       0.09   10.1   0.0    1.9  1  TIGR02081 metW: methionine biosynthesis protein MetW


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.0   4.4e-29   3.6e-26      17     217 ..      95     331 ..      89     341 .. 0.86

  Alignments for each domain:
  == domain 1    score: 90.3 bits;  conditional E-value: 4.4e-29
   TIGR02072  17 reiakkLlellkekr.kfepakvLdiGcGtGiltrallkr..fpqa.......elialDiseemleqakkkls................nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafstfgketlkElrqlfkqv........eahglrflsleelkallkke.fellkleeelitlsFedvlevlrslKkvGannlsqksr.lltrkklka 217
                 +e+a++L+++l++ + +     +LdiG+G G++ ra+ +   f+ +       ++++lD s++ml   +++++                + + ++ +  klp+ + +fDl++S+ a++W++dl  +++e++rvlkp+G ++fs +g  tl Elr ++  +         ah+ +f +++++ +l++++ f+l++++ ++++ s+ ++  ++++l  +G  n s ++r  ++r+ + a
  MMETSP1061-20121228|8916_1  95 KEMAARLVDRLDDIKrAEGFPLALDIGAGEGHIYRAICSDdaFEGEggiggvrKMVLLDSSAGMLGLDNNDNHidnndnetiegshrcdAYKLHADEEDKLPFPDGTFDLVMSSQAIHWINDLPGLFREVHRVLKPDGCFVFSMIGGATLPELRIAMVLAelereggvGAHVGPFVEVSDVGSLIQNAgFSLPTIDVDTVKISYPSAPVLMEHLQRMGEGNASLRRReHTGRDVFLA 331
                 89***********9985555699************997652233222222222799*********988888889999*******9999766777777779******************************************************99987788999985559***********************************************9999888865777776655 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0     4e-09   3.3e-06      44     140 ..     118     235 ..     102     239 .. 0.70

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 4e-09
   TIGR01934  44 lDvatGtGdlaielakkae..........akvtgvDlseemLevak..kkakekeeanv.........efieadaeeLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlv 140
                 lD+ +G G +  +++   +          +k++++D s+ mL + +  + + ++ ++ +         +  + +  +Lpf+d +fd+v  +  +  ++d     +e++RVlkp+g++v
  MMETSP1061-20121228|8916_1 118 LDIGAGEGHIYRAICSDDAfegeggiggvRKMVLLDSSAGMLGLDNndNHIDNNDNETIegshrcdayKLHADEEDKLPFPDGTFDLVMSSQAIHWINDLPGLFREVHRVLKPDGCFV 235
                 67777777777777665555666777777777788888888754331033333322222111111111344455578**************************************997 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.1e-07   9.2e-05      73     149 ..     158     236 ..     143     253 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.1e-07
   TIGR02752  73 vkgldfsenmlsvgkek.vkda.klenvelvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvc 149
                 + gld  +n ++   +  ++ + + +  +l   +  +lp++d +fd v     +  + d   +++e++rv+kp g  v 
  MMETSP1061-20121228|8916_1 158 MLGLDNNDNHIDNNDNEtIEGShRCDAYKLHADEEDKLPFPDGTFDLVMSSQAIHWINDLPGLFREVHRVLKPDGCFVF 236
                 6788888888876654414444144555666667789*************************************98775 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.1e-06    0.0034      62     169 ..     146     255 ..      91     292 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.1e-06
   TIGR01983  62 llseslarlgaevtgiDlseelievAklhakkdplkkieyelks.veelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilflstinr.tlksyllaivlaE 169
                 +    l  ++a + g+D  ++ i+   + + +   +   y+l++  e+     + +fD+v+++  +  ++dl  + +e+ ++lkp+g  ++s i   tl    +a+vlaE
  MMETSP1061-20121228|8916_1 146 VRKMVLLDSSAGMLGLDNNDNHIDNNDNETIEGSHRCDAYKLHAdEEDKLPFPDGTFDLVMSSQAIHWINDLPGLFREVHRVLKPDGCFVFSMIGGaTLPELRIAMVLAE 255
                 55555556666677777777777776666655555534555444034444555899************************************997514445556666666 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00011      0.09      18     102 ..     118     228 ..     112     235 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00011
   TIGR02081  18 LDlGcGdGeLLallrdekqveg..........................aGleideenvlacvarG.veviqqdldegLeafedksfDvvvlsqtlqavrnteeiLdellRvg 102
                 LD+G+G+G++ +++  +   eg                          + ++ ++++ ++  +r   + +++d ++ L  f+d +fD+v+ sq++  ++    + +e+ Rv 
  MMETSP1061-20121228|8916_1 118 LDIGAGEGHIYRAICSDDAFEGeggiggvrkmvlldssagmlgldnndNHIDNNDNETIEGSHRCdAYKLHADEEDKL-PFPDGTFDLVMSSQAIHWINDLPGLFREVHRVL 228
                 899999999999999999888888999999999999999985555554445555555555555531334455555555.59*******************999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.33
# Mc/sec: 1371.89
//
Query:       MMETSP1061-20121228|8909_1  [L=802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-16   57.9   0.0    1.3e-16   57.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    8.6e-15   52.7   0.0    8.5e-07   26.4   0.0    3.1  3  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
    1.7e-05   22.2   0.0    3.4e-05   21.2   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.078   10.0   2.3        1.8    5.5   2.6    2.0  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   1.3e-19   1.3e-16       3     211 ..     506     703 ..     504     730 .. 0.86

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 1.3e-19
   TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadG..aLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaev.lykqLsPvdvslPs 211
                 +   a+k l + a   +++v    Re ++ a+++hP +v L+   + +d  l+    +v+G  l  v+ ++    +p ++     + +L++l++ h++G+ +RDLkP+ni++ a++      ++D G + ++++           t  + G+P+Y aPe +      +  D++a+G+++ e L G+       + +v l+k++  v+ ++P+
  MMETSP1061-20121228|8909_1 506 SVPYALKQLSKRAIIGHHQVEGVLREKNIMANIQHPFVVDLVATFQ-DDRHLYMLIALVQGGELFSVIHTETrdGIPNGNSRFYAACILESLSHLHRRGIAYRDLKPENILIDAKG---YCVLVDLGFAKIVADK----------TYTLCGTPEYLAPEIILSKGHDSGVDYWAFGVLIYEMLVGRSPFYSYGTDQVsLFKRIVQVKYAFPP 703
                 5556899999999999**************************8765.5669*****************987522589999999999**************************7776...57899***99887654..........34578************************************99999888888679999999999887 PP

>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.6e-07   0.00017     145     249 ..     112     211 ..     108     218 .. 0.72
   2 !   26.4   0.0   8.3e-10   8.5e-07     137     248 ..     223     333 ..     203     347 .. 0.85
   3 !    4.2   0.0    0.0049       5.1      11      51 ..     375     416 ..     357     453 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.6e-07
   TIGR03896 145 ilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgssrrGeilGelsflnsdlaatatvkavealvlLaidkeelaakLq 249
                 i++ l  ++   l  +  ++k+ agtv+ik ge+ d +Y++ +G++  ++     +++vg   rG  +Gel++l      +at  a ++  l  +d++ ++  L 
  MMETSP1061-20121228|8909_1 112 IFASLSAQERRLLIDAMVMEKVQAGTVIIKQGETGDFFYVVDEGHVTFAVD----GNHVGACGRGGSFGELALLYNCPR-AATCLANTTCRLWKVDQRTFRYMLA 211
                 566666666666666667788888888888888888888888887666554....356888888888888888866555.6888888888888888877776665 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 8.3e-10
   TIGR03896 137 epLrkvLlilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGeaelsisedgasrevgss.rrGeilGelsflnsdlaatatvkavealvlLaidkeelaakL 248
                 + Lrkv + l+el e+D+  +  + + + ++ g+ +i+ g+  + +Yil +G++++     g sr v ++   G+ +Ge ++l +d+  +a v +v++   L + +e + + L
  MMETSP1061-20121228|8909_1 223 DVLRKVPF-LSELGESDLLRISDALTSVTFPEGERIINKGDVGEVFYILREGKVKVHDIGFGDSRYVDQLlGPGDWFGERALLTGDAR-SAHVTSVTNCTTLCLSRETFEMVL 333
                 34555554.79*********************************************98888999999886268***************.******************999877 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0049
   TIGR03896  11 reiaaettLieeGka.addLfilldGaitvtikqeeddaltr 51 
                 r   a+t L eeGk   ++L+i+ +G i v  ++ + ++l +
  MMETSP1061-20121228|8909_1 375 RTFPAGTILAEEGKPyEQNLYIIREGRIVVSSSKGQVNTLMD 416
                 444455666666664134566666666666666555555555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   3.3e-08   3.4e-05      25     139 ..     504     633 ..     491     640 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 3.3e-08
   TIGR03724  25 RvkKsYrhpelDeklrkeRtrkEarllseakkagvntPvvydv.....dpeekkivmeyiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkks 139
                 R++  Y  ++l ++      + E  l ++   a ++ P v+d+     d+++  +++  ++g +l  ++++++           ++  + e +++lH+ gi++ Dl ++Ni+++ ++ ++l+D+G +k+ 
  MMETSP1061-20121228|8909_1 504 RTSVPYALKQLSKRAIIGHHQVEGVLREKNIMANIQHPFVVDLvatfqDDRHLYMLIALVQGGELFSVIHTETRdgipngnsrFYAACILESLSHLHRRGIAYRDLKPENILIDaKGYCVLVDLGFAKIV 633
                 555555555555555554444444444444455555555544322222445556667778888888877776556777777655666788999********************52777899*****9975 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   2.6    0.0017       1.8      73     135 ..       7      70 ..       2      83 .. 0.70
   2 ?    0.5   0.0     0.058        60     345     380 ..     624     659 ..     618     660 .. 0.93

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.0017
   TIGR00601  73 mvskkKavk..akaaePaatpesaptptpsatpasva.ekksaaPasaveeessaeeeatatales 135
                 m  kkK+ k   ++a+P+++ ++ap+p+p  +pa+++  +   aP  + +e+ + + +a   a ++
  MMETSP1061-20121228|8909_1   7 MFKKKKSEKkvDASASPKSSVNAAPAPAP--PPAAPTvDHGGVAPMQTDAEDRERQINAHGKARQK 70 
                 78888888733356778888888888887..55555515567899999999888777666665555 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.058
   TIGR00601 345 LkalGFdrdlviqaylACdknEelAanyLleqnade 380
                 L +lGF + +  + y  C   E lA  ++l++++d+
  MMETSP1061-20121228|8909_1 624 LVDLGFAKIVADKTYTLCGTPEYLAPEIILSKGHDS 659
                 779*****9999********************9995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.51
# Mc/sec: 2075.59
//
Query:       MMETSP1061-20121228|8919_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-43  143.0   0.1    7.6e-43  142.5   0.0    1.2  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    9.4e-11   39.6   0.0    1.7e-10   38.8   0.0    1.5  1  TIGR02180 GRX_euk: glutaredoxin
    1.1e-10   39.5   0.0    1.7e-10   38.8   0.0    1.3  1  TIGR02181 GRX_bact: glutaredoxin 3
    4.5e-06   24.4   0.0    6.4e-06   23.9   0.0    1.3  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    1.8e-05   22.4   0.0      3e-05   21.7   0.0    1.4  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
      0.002   16.5   0.0     0.0031   15.9   0.0    1.3  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.5   0.0   1.1e-45   7.6e-43       1      98 [.      56     153 ..      56     154 .. 0.98

  Alignments for each domain:
  == domain 1    score: 142.5 bits;  conditional E-value: 1.1e-45
   TIGR00365   1 vkekikeqvkenkvvlymkGtpelpqCGfsakavqilkalgvefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkllk 98 
                 ++e+i++ v++++v+l+mkG++ +pqCGfs++a+qil+++++++++v+vl+de++r+++k++s+WPtiPqlyv ge++GG+di++e+y++gel ++++
  MMETSP1061-20121228|8919_1  56 TQERIQDLVDNHPVLLFMKGSKLFPQCGFSNTACQILNSYEIDYHSVDVLSDEAVRQGVKDFSQWPTIPQLYVCGEFIGGSDIMIEMYQNGELGEMIE 153
                 589*******************************************************************************************9997 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   2.5e-13   1.7e-10       7      83 ..      80     151 ..      69     152 .. 0.90

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2.5e-13
   TIGR02180   7 syCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkleel 83 
                 + C +++ a ++L++++++  ++ v++ +    +++++  k++++  t+P++++ g+fiGGsd + +++++g+l e+
  MMETSP1061-20121228|8919_1  80 PQCGFSNTACQILNSYEID--YHSVDVLSD---EAVRQGVKDFSQWPTIPQLYVCGEFIGGSDIMIEMYQNGELGEM 151
                 47**************999..888887655...899**************************************987 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   2.6e-13   1.7e-10       8      79 ..      81     151 ..      78     152 .. 0.96

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2.6e-13
   TIGR02181   8 sCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigdvhvGGcddLlaleregkLdkL 79 
                 +C+++++A ++L++ +++++ ++v +d++ r+ + + s+   t+PQ+++  + +GG+d ++++ ++g+L ++
  MMETSP1061-20121228|8919_1  81 QCGFSNTACQILNSYEIDYHSVDVLSDEAVRQGVKDFSQ-WPTIPQLYVCGEFIGGSDIMIEMYQNGELGEM 151
                 8*************************************6.****************************9876 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   9.3e-09   6.4e-06       2      97 ..      61     158 ..      60     160 .] 0.80

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 9.3e-09
   TIGR02189   2 rrlvsekavvifskss.....CClshvvkrLllelGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpllkkagal 97 
                 ++lv +++v++f k s     C +s ++ ++l  + ++   v++ ++++   + + + +++  +++P ++v G+++Gg + ++ ++ +g+L ++++ka+a 
  MMETSP1061-20121228|8919_1  61 QDLVDNHPVLLFMKGSklfpqCGFSNTACQILNSYEIDYHSVDVLSDEA---VRQGVKDFSQWPTIPQLYVCGEFIGGSDIMIEMYQNGELGEMIEKAKAD 158
                 6778888888888876666668888888888888888876666665544...45555566669**********************************9985 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   4.4e-08     3e-05      16      74 ..      80     139 ..      66     144 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 4.4e-08
   TIGR02190  16 pGCPfCakakavLkekGldfeei.vLgkdirtrslravtGattvPqvfinGkliGgsdel 74 
                 p C f   a + L+   +d+  + vL  ++  + ++  +   t+Pq ++ G++iGgsd +
  MMETSP1061-20121228|8919_1  80 PQCGFSNTACQILNSYEIDYHSVdVLSDEAVRQGVKDFSQWPTIPQLYVCGEFIGGSDIM 139
                 6799****************9996789999999************************976 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.5e-06    0.0031       8      63 ..      80     135 ..      78     144 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.5e-06
   TIGR02196   8 pwCppCkkakeyLkskgiafeeidvekdsaaaeellkklgqrsvPvivigekivvG 63 
                 p+C+  + a + L+s  i+++ +dv  d+a ++ +   ++   +P++ + ++ + G
  MMETSP1061-20121228|8919_1  80 PQCGFSNTACQILNSYEIDYHSVDVLSDEAVRQGVKDFSQWPTIPQLYVCGEFIGG 135
                 78********************************8888888999999988776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 879.93
//
Query:       MMETSP1061-20121228|8912_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1785.00
//
Query:       MMETSP1061-20121228|8914_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1955.39
//
Query:       MMETSP1061-20121228|8922_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 538.96
//
Query:       MMETSP1061-20121228|8925_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 666.54
//
Query:       MMETSP1061-20121228|8920_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.26
# Mc/sec: 3127.13
//
Query:       MMETSP1061-20121228|8926_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   16.0   4.2       0.27    8.9   0.1    3.3  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   6.7e-05      0.27      16      26 .]     214     224 ..     210     224 .. 0.88
   2 !    6.7   0.3   0.00033       1.4       1      26 []     225     249 ..     225     249 .. 0.85
   3 ?   -0.6   0.0     0.062   2.5e+02       1       9 [.     250     258 ..     250     261 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 6.7e-05
   TIGR02167  16 fdTsnVTnMss 26 
                 +++++VT Ms+
  MMETSP1061-20121228|8926_1 214 WNVGEVTSMSN 224
                 *********97 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00033
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMss 26 
                 MFs  + +++ +l  +++ +VT M++
  MMETSP1061-20121228|8926_1 225 MFSALKLFNE-PLNCWNVMKVTEMNG 249
                 7888888888.8888*********85 PP

  == domain 3    score: -0.6 bits;  conditional E-value: 0.062
   TIGR02167   1 MFsgCssLt 9  
                 MF+g s+++
  MMETSP1061-20121228|8926_1 250 MFGGASAFN 258
                 9****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1820.06
//
Query:       MMETSP1061-20121228|8930_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|8924_1  [L=429]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (429 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1952.53
//
Query:       MMETSP1061-20121228|8929_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.32
# Mc/sec: 2912.01
//
Query:       MMETSP1061-20121228|8927_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1759.85
//
Query:       MMETSP1061-20121228|8935_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 465.10
//
Query:       MMETSP1061-20121228|8939_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|8937_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|8934_1  [L=661]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-92  306.1   0.0    2.6e-77  258.2   0.0    3.1  3  TIGR01788 Glu-decarb-GAD: glutamate decarboxylase
    9.7e-35  117.9   0.0      7e-31  105.2   0.0    2.2  2  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
    2.2e-05   20.9   0.0    3.1e-05   20.4   0.0    1.3  1  TIGR03799 NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
    0.00018   18.7   0.0    0.00029   18.0   0.0    1.2  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
  ------ inclusion threshold ------
      0.013   11.7   0.0      0.067    9.4   0.0    1.9  2  TIGR03811 tyr_de_CO2_Ent: tyrosine decarboxylase


Domain annotation for each model (and alignments):
>> TIGR01788  Glu-decarb-GAD: glutamate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.054        45      27      56 ..      80     108 ..      54     119 .. 0.73
   2 !   43.3   0.0   5.2e-15   4.2e-12      63     127 ..     153     222 ..     147     249 .. 0.86
   3 !  258.2   0.0   3.2e-80   2.6e-77     125     429 ..     259     592 ..     236     594 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.054
   TIGR01788  27 ayqlikdellldGnprlnLasfvttymede 56 
                   ql+++   ld  prln +s+v+   e+e
  MMETSP1061-20121228|8934_1  80 KEQLVQN-HELDNRPRLNTSSYVNVVFEEE 108
                 4456655.57999***********876665 PP

  == domain 2    score: 43.3 bits;  conditional E-value: 5.2e-15
   TIGR01788  63 etleknlidkdeyPqtaelenrcvnmladLfnaelkdee.....avGtstiGsseaimLgglamkkrWrk 127
                 + l+ nl+d + yP++++l+ r+v+ +a+L+n +++++      + G +t+Gs+ea++L+ la+k+r + 
  MMETSP1061-20121228|8934_1 153 QGLSINLADGSVYPASVDLHDRVVDSIAKLWNCPVEEQGdnfqhFAGSGTVGSTEACLLALLAHKFRVKY 222
                 56888*****************************77654577889********************99764 PP

  == domain 3    score: 258.2 bits;  conditional E-value: 3.2e-80
   TIGR01788 125 Wrkr.mkaaGkdad.....kPnlvlgsavqvcwekfaryfevelrlvpvekdrlvldpeevvelvdentigvvailGttytGeledvkklndlLeeleaktgldvpihvdaasGGfivPfvepdleWdfrlprvvsinvsGhkyGLvypGvGwviwrdeeaLpeeLifkvnyLGgeeetftlnfsrpasqvvaqyynflrlGkeGyrkimqklldvaralaeelekl......gafeilskg..egvPlvafklkdkadteytlldlsekLrerGWivPaytlpkeae...............dievlrivvredlsldlaelliedlekalak 429
                 Wrk  ++  G ++d      Pn+v+ s++q cwek+ ry +++ ++++ e ++  ++pee+ +lvde ti vv++lG  y+G ++++ ++ +lL ++++++g++v +hvdaasGGfi+Pf +    Wdfrl++v si++sGhk+G    G Gw+++r++e L+e +  +v yLGg   ++tlnfsrpa+ v  q y+flrlG  Gyr+ +++ l++++ +++++++l        fei  ++  +g+P++a +++ k   +++ ++l   + e+ W v ay l+ e                 +  + r+v++++l+ ++a+ l++ l +++++
  MMETSP1061-20121228|8934_1 259 WRKWyAERHGLTHDevigvVPNIVIPSHYQACWEKAFRYLDIKPKFLYPEFKKFRINPEELRDLVDEMTIMVVGVLGNHYNGTYDPIWEMDQLLGRINEQKGFQVGLHVDAASGGFIAPFQDNVPAWDFRLKNVLSISASGHKFGESSCGTGWIVFRHREGLSEHIEVEVTYLGGVSRSMTLNFSRPATGVYVQAYKFLRLGMVGYRRKVRNQLETTKGFRDRIRSLkwnngePIFEISDSDdePGLPVFAARVNPKLGLKFDDFALQRAMVEFHWYVSAYHLSFEDFgrgrvstalckdeekNASMFRVVFKSNLTHQMADDLFNRLAEVMEH 592
                 55431344566655445557*************************************************************************************************************************************************************************************************************998887655688865545589***********************************9985543344555566666667899******************9988877765 PP

>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   5.7e-05     0.047      43     101 ..     154     221 ..     136     233 .. 0.86
   2 !  105.2   0.0   8.5e-34     7e-31     107     312 ..     278     488 ..     265     503 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 5.7e-05
   TIGR03812  43 fletnLGDpgLfkGtkkleeevvellgellhl.........kealGyivsGGteanilalraaknlak 101
                  l  nL D  +++ + +l ++vv+++++l ++         ++  G  + G tea +lal a k  +k
  MMETSP1061-20121228|8934_1 154 GLSINLADGSVYPASVDLHDRVVDSIAKLWNCpveeqgdnfQHFAGSGTVGSTEACLLALLAHKFRVK 221
                 5678****************************999999998888999999*********998876555 PP

  == domain 2    score: 105.2 bits;  conditional E-value: 8.5e-34
   TIGR03812 107 kpeiivPesahfsfekaaellglelvk.aeldeeykvdvkkveeliedntiglvgiaGttelGlvDdiee....lskiaken..dlylhvDaafGGfviPflkkkgeklakfDfklkGvksitiDPhkmGlapiPaGgllfreke.ylksleveapyLtekk.qatlvGtrsGasaaa.tyavlkylGreGyrkvveecmeltrylveelkklgle 312
                  p+i++P+     +eka   l+++     +  ++++++ +++++l+++ ti +vg+ G+   G+ D+i e    l++i +++  ++ lhvDaa GGf+ Pf     ++ + +Df+lk v si+   hk G ++  +G ++fr++e + +++eve  yL   +  +tl   r+ +++   +y  l  lG+ Gyr+ v++ +e+t+ ++++++ l+ +
  MMETSP1061-20121228|8934_1 278 VPNIVIPSHYQACWEKAFRYLDIKPKFlYPEFKKFRINPEELRDLVDEMTIMVVGVLGNHYNGTYDPIWEmdqlLGRINEQKgfQVGLHVDAASGGFIAPFQ----DNVPAWDFRLKNVLSISASGHKFGESSCGTGWIVFRHREgLSEHIEVEVTYLGGVSrSMTLNFSRPATGVYVqAYKFL-RLGMVGYRRKVRNQLETTKGFRDRIRSLKWN 488
                 69******9999***********97641455589**********************************8822224556666522688**************9....8999********************************98725589********8654389******9998865156666.58*********************99998765 PP

>> TIGR03799  NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.8e-08   3.1e-05     265     418 ..     326     484 ..     308     595 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3.8e-08
   TIGR03799 265 kvlaivGvaGttetGnvdPldeladia......qeldchfhvdaawGGatl.lsekyrkllkGieradsvtidahkqlyvPmGaGlvlfkdPa.lvkaiehhaeyilrkGskdlGshtleGsrsgmamlvyas.lkiigrkGyellidqsiekakyfaelikq 418
                   + +vGv G    G  dP+ e+ ++       + +++ +hvdaa GG    + ++       +++  s++  +hk      G+G ++f++ + l++ ie    y+    s    s tl+ sr+++ + v+a  +  +g  Gy   + + +e +k f + i++
  MMETSP1061-20121228|8934_1 326 MTIMVVGVLGNHYNGTYDPIWEMDQLLgrineqKGFQVGLHVDAASGGFIApFQDNVPAWDFRLKNVLSISASGHKFGESSCGTGWIVFRHREgLSEHIEVEVTYL-GGVS---RSMTLNFSRPATGVYVQAYkFLRLGMVGYRRKVRNQLETTKGFRDRIRS 484
                 45789***************99988752211112345679********65415555555555689999**********************9872556788888886.2233...488*************98526669*******************999875 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   3.6e-07   0.00029     125     233 ..     313     436 ..     305     447 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3.6e-07
   TIGR03235 125 ridveelkeairedtllvslmavnnevGslqpireiaevl...eer...evflhvDaaqv..vgkiavdlsa.....kridlisvsghkiy.gPkGiGalvirkrrkkkaplk.PllfGGGqer 233
                 ri++eel++ + e t++v  + +n   G+ +pi e+ ++l   +e+   +v lhvDaa +  ++  ++++ a     k++  is sghk+  +  G G +v r+r+    +++  +++ GG  r
  MMETSP1061-20121228|8934_1 313 RINPEELRDLVDEMTIMVVGVLGNHYNGTYDPIWEMDQLLgriNEQkgfQVGLHVDAASGgfIAPFQDNVPAwdfrlKNVLSISASGHKFGeSSCGTGWIVFRHREGLSEHIEvEVTYLGGVSR 436
                 89*******************************99887763323331224679****98644466666665511111555568899****72567********988776666523666666655 PP

>> TIGR03811  tyr_de_CO2_Ent: tyrosine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   8.1e-05     0.067     269     326 ..     319     375 ..     305     393 .. 0.84
   2 ?   -0.8   0.0      0.11        86     442     484 ..     452     494 ..     443     502 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 8.1e-05
   TIGR03811 269 irelaaekipilgvvgvvgsteegavdsidkivalreklv.kegiyfylhvdaayggya 326
                 +r+l++e +  + vvgv g   +g+ d+i ++ +l  ++  ++g    lhvdaa gg+ 
  MMETSP1061-20121228|8934_1 319 LRDLVDEMT--IMVVGVLGNHYNGTYDPIWEMDQLLGRINeQKGFQVGLHVDAASGGFI 375
                 566666654..569********************99998725699999********985 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.11
   TIGR03811 442 aahkvlplnvagygkligasiegakrfydfldnlefkvgdkei 484
                  a+k l l + gy + + + +e++k f d + +l+++ g+   
  MMETSP1061-20121228|8934_1 452 QAYKFLRLGMVGYRRKVRNQLETTKGFRDRIRSLKWNNGEPIF 494
                 5899****************************99998776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (661 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 2295.92
//
Query:       MMETSP1061-20121228|8942_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 502.82
//
Query:       MMETSP1061-20121228|8941_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1792.85
//
Query:       MMETSP1061-20121228|8946_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|8950_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 371.97
//
Query:       MMETSP1061-20121228|8943_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00029   18.8   1.8    0.00044   18.2   1.2    1.2  1  TIGR02833 spore_III_AB: stage III sporulation protein AB
     0.0042   14.2   0.5     0.0062   13.6   0.4    1.3  1  TIGR03275 methan_mark_8: putative methanogenesis marker protein 8
  ------ inclusion threshold ------
      0.028   11.8   1.1      0.046   11.1   0.6    1.4  1  TIGR02458 CbtA: cobalt transporter subunit CbtA (proposed)
      0.062   10.9   5.0        1.9    6.1   0.7    2.6  4  TIGR00336 pyrE: orotate phosphoribosyltransferase
      0.067   10.5   2.6      0.098    9.9   1.6    1.4  1  TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase
        1.6    6.7   7.5        3.4    5.7   0.3    2.6  3  TIGR04169 perox_w_seleSAM: alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein


Domain annotation for each model (and alignments):
>> TIGR02833  spore_III_AB: stage III sporulation protein AB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   1.2   6.4e-07   0.00044      37     154 ..      20     139 ..       3     142 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 6.4e-07
   TIGR02833  37 LqeleaeivYtatpLeealkkiakksekpvkklfeeiserlkekevetvkeafkkalkekkkktaLkkeekeillqlgktlG......esdveeqqkhlrltlekLeaelaeaedeqkknekly 154
                 L+ l   + Y    ++   k +a++ +++ ++l +++s+++k++e+  ++   ++ l+ +  ++++k++e+ + ++ + ++G       ++++++++++  ++++L ++la a +e+k ne+++
  MMETSP1061-20121228|8943_1  20 LNGL--KLEYASNAMKSNEKIVAAAVSQTGSAL-AHASREMKNNETIVARAVSQDGLALQHASSSMKNNERIV-AAAVSQIGyalvhaSKEMRNNERVVLAAVSQLGQALAYASNEMKDNERVV 139
                 3444..456999999998888888888886665.67*********9999999999****99999999998755.54455555222222568999999************************986 PP

>> TIGR03275  methan_mark_8: putative methanogenesis marker protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.4   9.1e-06    0.0062     157     252 ..      30     126 ..      15     134 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 9.1e-06
   TIGR03275 157 kaielgykkiavtvadaedakeirelekeldldvliiavhvtGideedaeelvky.aDivtsCaskairelakkkallqvgsavPvyaltkkGkell 252
                 +a++ + k +a +v+++ +a +  + e + +  ++  av   G+  ++a + +k+   iv++  s+    l++  + ++  ++v + a+++ G+ l 
  MMETSP1061-20121228|8943_1  30 NAMKSNEKIVAAAVSQTGSALAHASREMKNNETIVARAVSQDGLALQHASSSMKNnERIVAAAVSQIGYALVHASKEMRNNERVVLAAVSQLGQALA 126
                 6888899999999999887766555555667999999********99988766650567777778888889999999****************9875 PP

>> TIGR02458  CbtA: cobalt transporter subunit CbtA (proposed)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.6   6.7e-05     0.046      32      96 ..      38     103 ..      19     115 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.7e-05
   TIGR02458  32 iLkaetyekaealaassheaaeaavavaaa.aaeeeawapadGfeRlaltvvanlvtgvGfallla 96 
                 i+ a +  ++ ala  s e  + +++va a +++  a + a   ++    +va+ v+++G+al+ a
  MMETSP1061-20121228|8943_1  38 IVAAAVSQTGSALAHASREMKNNETIVARAvSQDGLALQHASSSMKNNERIVAAAVSQIGYALVHA 103
                 66677777777778777777777666665505567899*************************966 PP

>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.2    0.0028       1.9     106     143 ..      33      69 ..      22      70 .. 0.82
   2 ?    6.1   0.7    0.0027       1.9     116     167 ..      67     118 ..      59     124 .. 0.82
   3 ?    5.2   0.4    0.0053       3.6     106     162 ..      83     138 ..      76     148 .. 0.73
   4 ?   -1.5   0.0      0.59   4.1e+02     123     149 ..     142     168 ..     131     186 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0028
   TIGR00336 106 kegkkvvvveDvittGtsileaveaiqeagaevagviv 143
                 k ++k+ v   v  tG+++ +a +++++++++va +++
  MMETSP1061-20121228|8943_1  33 KSNEKI-VAAAVSQTGSALAHASREMKNNETIVARAVS 69 
                 556665.4567999*******************98875 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0027
   TIGR00336 116 DvittGtsileaveaiqeagaevagvivvldrqevsaeeevekeyelkllsl 167
                  v   G ++++a   +++++ +va++++ + +  v a +e+  +  + l ++
  MMETSP1061-20121228|8943_1  67 AVSQDGLALQHASSSMKNNERIVAAAVSQIGYALVHASKEMRNNERVVLAAV 118
                 5666799999***************************999999877766665 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.0053
   TIGR00336 106 kegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsaeeevekeyel 162
                 k+++++ v   v   G ++ +a +++++++  v ++++ l +    a +e++ +  +
  MMETSP1061-20121228|8943_1  83 KNNERI-VAAAVSQIGYALVHASKEMRNNERVVLAAVSQLGQALAYASNEMKDNERV 138
                 444444.34567778999999999999999999999999988888888887776555 PP

  == domain 4    score: -1.5 bits;  conditional E-value: 0.59
   TIGR00336 123 sileaveaiqeagaevagvivvldrqe 149
                 ++ e  +a++ ag+++++ i +++   
  MMETSP1061-20121228|8943_1 142 AVAEDGRALEYAGGHLKTKIGIVQSAL 168
                 455566677777777777777766444 PP

>> TIGR01263  4HPPD: 4-hydroxyphenylpyruvate dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.6   0.00014     0.098      45     123 ..      22     102 ..       3     140 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00014
   TIGR01263  45 qgeitlvltaelsssseaaaflakHGdgvkdvafevedveaafeaavergaeavsapee.ed.ekevklaaikgiGdvvlt 123
                   ++++  +a +s+++ +aa +++ G + +  + e+++ e++ ++av+++  a++++ +  + ++++ +aa++ iG +++ 
  MMETSP1061-20121228|8943_1  22 GLKLEYASNAMKSNEKIVAAAVSQTGSALAHASREMKNNETIVARAVSQDGLALQHASSsMKnNERIVAAAVSQIGYALVH 102
                 456677778888899999999999999999999999999999999999999998888775444899999999999944333 PP

>> TIGR04169  perox_w_seleSAM: alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.3    0.0097       6.6      69     102 ..      25      59 ..      19      65 .. 0.79
   2 ?    5.7   0.3    0.0049       3.4      68     102 ..      74     109 ..      67     115 .. 0.76
   3 ?   -2.6   0.0       1.9   1.3e+03      72      94 ..     128     150 ..     120     157 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0097
   TIGR04169  69 lekGankeemteavhvaaairgGatlvhgvq.mkn 102
                 le  +n  + +e + +aa  ++G +l h+ + mkn
  MMETSP1061-20121228|8943_1  25 LEYASNAMKSNEKIVAAAVSQTGSALAHASReMKN 59 
                 66778888899999999999********8752555 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0049
   TIGR04169  68 slekGankeemteavhvaaairgGatlvhgvq.mkn 102
                 +l++ ++  + +e + +aa  + G +lvh+ + m+n
  MMETSP1061-20121228|8943_1  74 ALQHASSSMKNNERIVAAAVSQIGYALVHASKeMRN 109
                 57778888888999999999999******8761554 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.9
   TIGR04169  72 GankeemteavhvaaairgGatl 94 
                  +n+ + +e v  aa  + G +l
  MMETSP1061-20121228|8943_1 128 ASNEMKDNERVVLAAVAEDGRAL 150
                 55666666777777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1003.12
//
Query:       MMETSP1061-20121228|8954_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-10   39.7   0.1    0.00022   19.1   0.0    2.3  2  TIGR00568 alkb: alkylated DNA repair protein AlkB


Domain annotation for each model (and alignments):
>> TIGR00568  alkb: alkylated DNA repair protein AlkB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   5.3e-08   0.00022     113     147 ..       2      38 ..       1      42 [. 0.78
   2 !   18.4   0.0   8.4e-08   0.00035     148     172 ..      69      93 ..      63      94 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 5.3e-08
   TIGR00568 113 slHiD..rsEeDlrlPllslslGldaifllGglkRse 147
                 + H D  ++ + + +P++s+slGl+ if lGg +++e
  MMETSP1061-20121228|8954_1   2 GGHRDdlEDTKAMDKPIVSISLGLPGIFILGGPDKEE 38 
                 567772234456789*****************99887 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 8.4e-08
   TIGR00568 148 kpkalrlesGDvviltGesRlafHg 172
                 + +a++l  GDv+i++G sRl +H+
  MMETSP1061-20121228|8954_1  69 PVRAILLRPGDVLIMGGASRLNYHA 93 
                 7899********************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 1283.23
//
Query:       MMETSP1061-20121228|8945_1  [L=824]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-79  264.7   0.4    7.6e-76  253.7   0.1    1.8  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    2.4e-46  156.6   0.2    3.5e-12   43.9   0.0    4.4  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.3e-42  143.0   0.0    3.5e-12   43.2   0.0    4.1  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    7.5e-39  131.3   4.8    2.6e-12   44.4   0.0    4.2  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.7e-36  123.8   0.8    2.3e-10   37.5   0.0    4.3  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.4e-34  116.7   0.7    5.3e-15   53.3   0.1    4.0  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      6e-34  115.3   2.2    2.7e-12   44.5   0.0    4.6  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    9.3e-34  114.8   0.0    4.2e-10   37.5   0.0    4.2  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    6.5e-33  111.8   0.8    1.3e-09   35.6   0.0    4.9  5  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    7.9e-33  111.7   0.0    6.3e-09   33.4   0.0    4.2  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.2e-32  110.8   1.1    5.5e-08   30.3   0.0    4.4  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    4.5e-32  109.4   0.1    1.7e-07   29.0   0.0    4.3  4  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.2e-31  108.0   7.6    2.4e-11   41.3   0.1    4.3  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.5e-31  107.7   0.0    4.5e-08   30.9   0.0    4.2  4  TIGR00960 3a0501s02: type II secretory pathway family protein
    4.2e-31  106.0   0.0    1.8e-10   38.5   0.0    4.3  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    9.6e-31  105.0   2.4    1.7e-10   38.6   0.0    4.4  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.3e-30  104.4   1.5    1.2e-17   62.1   0.0    3.7  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.8e-30  104.2   0.1    2.5e-12   44.7   0.0    3.9  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.9e-30  103.9   0.1    7.8e-11   39.6   0.0    4.3  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.3e-30  102.9   0.0    1.2e-08   31.8   0.0    4.3  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.3e-29  101.1   0.2    2.1e-10   38.4   0.0    4.2  4  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    8.5e-29   98.7   0.3    1.4e-09   35.8   0.0    4.2  4  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    9.1e-29   98.5   0.2    9.5e-09   32.9   0.0    4.4  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.3e-28   97.6   1.8    5.7e-14   49.3   0.1    4.0  3  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.6e-28   97.8   0.3    3.3e-11   40.9   0.0    4.2  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    2.6e-28   96.4   1.0    9.6e-09   31.8   0.0    4.6  5  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.8e-27   92.9   0.0    5.9e-11   39.9   0.0    4.3  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    7.2e-27   92.2   0.3      6e-07   27.1   0.0    4.4  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.2e-26   90.1   1.1    1.8e-08   31.0   0.0    4.1  4  TIGR00958 3a01208: antigen peptide transporter 2
    3.7e-25   86.7   0.1    3.3e-08   31.0   0.0    4.3  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.6e-24   84.0   0.3    3.8e-07   27.8   0.0    4.2  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    7.3e-24   82.3   2.5    3.3e-07   27.8   0.0    4.3  4  TIGR01978 sufC: FeS assembly ATPase SufC
      9e-24   81.9   0.3    1.4e-07   28.3   0.0    4.2  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.2e-23   81.4   0.2    1.1e-05   22.0   0.0    4.4  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.1e-23   80.0   0.0    1.4e-07   28.2   0.0    4.1  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    4.5e-23   79.2   0.0    6.4e-08   29.2   0.0    4.1  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    7.1e-23   78.7   2.1      3e-06   23.8   0.0    4.6  5  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.5e-22   77.2   0.0    2.2e-08   31.7   0.0    4.2  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.7e-21   73.6   0.8    2.4e-07   28.4   0.0    4.3  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.1e-20   71.7   0.2    1.9e-06   24.9   0.0    4.1  4  TIGR01288 nodI: nodulation ABC transporter NodI
    1.2e-20   71.7   3.4    1.2e-08   32.2   0.0    4.7  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
      3e-20   70.4   0.9    1.5e-08   32.1   0.0    4.8  5  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    5.3e-20   69.5   0.1    4.6e-08   30.3   0.0    3.9  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.1e-19   68.5   1.4    2.5e-06   24.6   0.0    4.2  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.1e-18   64.4   0.2    1.1e-06   25.8   0.0    4.3  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.8e-17   60.4   0.7    1.2e-05   22.0   0.0    4.3  4  TIGR00955 3a01204: pigment precursor permease
    2.8e-17   60.2   0.1    0.00016   18.1   0.0    4.1  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    2.4e-16   57.1   0.1    0.00031   17.1   0.0    4.4  4  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    9.9e-16   55.3   0.0      4e-07   26.9   0.0    3.4  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    4.2e-15   52.1   0.1    0.00011   17.7   0.0    4.1  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.8e-14   51.3   2.4    9.8e-06   22.6   0.0    3.8  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      1e-11   42.6   0.0      0.011   13.1   0.0    3.9  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.5e-09   33.7   1.2    0.00029   16.2   0.0    3.9  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    4.2e-09   31.6   0.6    0.00033   15.4   0.0    3.5  3  TIGR01257 rim_protein: rim ABC transporter
    5.3e-07   26.4   0.0     0.0093   12.4   0.0    2.5  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    0.00014   17.4   6.2       0.18    7.1   0.2    4.2  5  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0003   18.9   0.1       0.38    8.8   0.0    2.5  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0023   15.5   0.3       0.86    7.2   0.0    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0049   13.8   0.0      0.011   12.6   0.0    1.5  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0076   13.6   0.0       0.14    9.5   0.0    2.3  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.009   13.7   0.0        1.1    6.9   0.0    2.5  2  TIGR00152 TIGR00152: dephospho-CoA kinase
  ------ inclusion threshold ------
      0.014   11.9   0.2       0.07    9.6   0.0    2.0  2  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
      0.015   12.4   0.0      0.058   10.4   0.0    1.9  2  TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
      0.016   12.2   1.7        1.5    5.6   0.0    3.2  3  TIGR00611 recf: DNA replication and repair protein RecF
       0.02   12.3   0.0       0.33    8.3   0.0    2.4  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
      0.025   12.3   0.4       0.36    8.5   0.1    2.4  2  TIGR00150 HI0065_YjeE: ATPase, YjeE family
       0.38    7.8   8.0       0.47    7.5   0.0    3.3  3  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0     3e-06   0.00018     323     371 ..     149     197 ..     102     209 .. 0.86
   2 !  253.7   0.1   1.2e-77   7.6e-76      19     544 ..     162     707 ..     150     712 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 3e-06
   TIGR03719 323 ievenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgk 371
                 ++v+n++ ++   +l+d+ s+ l +g   G+iG nG+Gkstl+k +  +
  MMETSP1061-20121228|8945_1 149 VNVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGAR 197
                 7889999999999******************************988765 PP

  == domain 2    score: 253.7 bits;  conditional E-value: 1.2e-77
   TIGR03719  19 eilkdislsffpgakiGvlGlnGaGkstllkimaG........vdkefeGealaaegikvGyleqePkldeektvrenveegvae.ikealdrfeeisak..laee...dadf.dklleeqaklqekidaadawdldskleiamdalrlpe..edakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGe.gipykgnysswleqkekrleqeekeeaarkkalkkeleWvrs.....spkarqakskarlaryeelaseesekk...eetaeivippgerlGdkvievenlskaf.gdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqs.rdalddnktvweeisdGldllklgkvevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeedkkkrlGedaaep 544
                  +l++ s+   +g + G++G nG+Gkstllk +          +d  f     ++++ ++  l+   ++dee+t  e+ ++++++ i+e++d+ e+ s++   +e+   ++++ +++++  + + e++da da + + +    +  l   +  + +k +++sGG + rv+l+r l+ +P  llldePtnhld e+v Wle++l++++  +++v h + fl+nv++ ++ +   +  + y+gny ++++ k+++ e++ k+ + ++ ++k+  e++ +     + +a+qa+sk ++   +++ ++  + k   e+  +   +   +l   v+ ++++s ++ g + l+ +++f +  ++ v ++GpnGaGk+tl+kl++g+ +   G+++    +kl+   q+  d ld +kt  e      ++l  ++ + + r y+grf+ +G  q +k+gels G++ rv lakl +e   +llldePtn ld+e + al +a++e+ G  v++shd  ++ ++a  i  +++   ++ ++G+  +++ d++k+lG + ++ 
  MMETSP1061-20121228|8945_1 162 VLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGAralpipnsIDIFFLK-EEVEPSDTLSALDAVMEVDEERTKLEQQADDLNKlISEVIDNPEKFSNEdsSGEPqksSEELqEEIMDALNAVYERLDALDASTAEVRARSILSGLGFTHemQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWNRILLLVSHSQDFLNNVCSHMIHFTNQKsLVYYDGNYDQFVKTKSEKEENQWKQYKWEQDSIKQMKEYIARfghgtAKNAKQAQSKEKV--LQKMIRAGLTPKpeeEKMLNFKFSDPGHLPPPVLAFHDVSFGYpGCQPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGHLKLGRFTQHfVDVLDLDKTPLEFF----ETLYPADPREEQRKYLGRFGVSGPMQVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEGGLVLVSHDMRLISQVANEIWICDDR-TITKYQGDIMNFKMDMRKQLGIEEQQG 707
                 578999999999*******************8854222211115554444.4567778899999999999999999988888876245677777777665114455333333325566667889999******************998876225678899****************************************************************999998665516789***********************************975222214456666666654..456655554444000444455677778999************956689***************************************************9888863799*****998865....7899999999*****************************************************************************************998765.78889****************988775 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.8e-08   1.1e-06     301     379 ..     136     205 ..     117     233 .. 0.77
   2 !   43.9   0.0   5.7e-14   3.5e-12     426     522 ..     289     382 ..     265     389 .. 0.83
   3 !   42.6   0.0   1.3e-13   8.2e-12     294     383 ..     453     550 ..     434     564 .. 0.77
   4 !   38.7   0.1   2.1e-12   1.3e-10     458     523 ..     607     670 ..     600     676 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.8e-08
   TIGR02857 301 ldaeeqpeaekapltaaassslelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGai 379
                           +++  +a+++ ++++nv+++  g+   l+e s+ ++ g++++l+G  G+GKstllk+l   + p   +i
  MMETSP1061-20121228|8945_1 136 AT--------SRKGVDARARDVNVTNVTLQHMGAV-LLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGARALPIPNSI 205
                 33........333344455699*************.*******************************977666666555 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 5.7e-14
   TIGR02857 426 aevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalael 522
                 ++++++  ++ + ++++ l+  ++ +  ++ +  SgG r R++LAral  +   lllDEPt hLD e+   +++ l +   +r++llv+H++  +++
  MMETSP1061-20121228|8945_1 289 DALDASTAEVRARSILSGLG-FTHEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSK--WNRILLLVSHSQDFLNN 382
                 45667777788888888886.445556788999***********************************9999999999..79*********988765 PP

  == domain 3    score: 42.6 bits;  conditional E-value: 1.3e-13
   TIGR02857 294 aealvevldaeeqpeaekapltaaass........slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvng 383
                  + l++++ a   p++e++++ + ++s         l +++vs+ y+g +p  ++v++ v+  ++valvG+ GaGK+tl+kl++g +++t G i+  g
  MMETSP1061-20121228|8945_1 453 EKVLQKMIRAGLTPKPEEEKMLNFKFSdpghlpppVLAFHDVSFGYPGCQPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHG 550
                 333344444444555555555555544888899999********************************************************998655 PP

  == domain 4    score: 38.7 bits;  conditional E-value: 2.1e-12
   TIGR02857 458 gLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaela 523
                 +LS Gq+ R+ LA++  +  ++lllDEPt hLD e+  ++ +a++e+  g  ++lv+H+  l+ ++
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEGG--LVLVSHDMRLISQV 670
                 79********************************************7665..78899*99987765 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   1.7e-07   1.1e-05     466     514 ..     149     195 ..     139     207 .. 0.84
   2 !   43.2   0.0   5.7e-14   3.5e-12     599     694 ..     316     412 ..     301     414 .. 0.86
   3 !   32.3   0.0   1.2e-10   7.2e-09     466     525 ..     489     547 ..     447     552 .. 0.92
   4 !   40.0   0.0   5.3e-13   3.2e-11     595     679 ..     600     682 ..     595     688 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 1.7e-07
   TIGR03375 466 ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklll 514
                 +++ nv++++  +    L+++s+ ++ G++ ++iGr+G+GKstllk l 
  MMETSP1061-20121228|8945_1 149 VNVTNVTLQH--MGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALG 195
                 6677777777..456789***************************9875 PP

  == domain 2    score: 43.2 bits;  conditional E-value: 5.7e-14
   TIGR03375 599 erGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe.lvdriivldkGr..ivadGpkdevlealkk 694
                  + + +SgG r  v+laRal  +p  llLDEPt++lD+++   l + L+++  ++ l+lv+H + +L+ ++ ++i +++++  +  dG+ d+ ++  ++
  MMETSP1061-20121228|8945_1 316 KKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKW--NRILLLVSHSQDFLNnVCSHMIHFTNQKslVYYDGNYDQFVKTKSE 412
                 56789************************************9999999999..689***********73668999998887556789999998887765 PP

  == domain 3    score: 32.3 bits;  conditional E-value: 1.2e-10
   TIGR03375 466 ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvl 525
                 +++++vsf Yp+ + +   nv++ +   ++va++G +G+GK+tl kl++g +++t G + 
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQ-PLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIR 547
                 579********986.5679************************************99986 PP

  == domain 4    score: 40.0 bits;  conditional E-value: 5.3e-13
   TIGR03375 595 lqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelv.driivldkGri 679
                 +q++  G +LS GQ+  v+la++  + p+illLDEPt++lD++s + l ++++e+     lvlv+H + l++ v + i + d+ +i
  MMETSP1061-20121228|8945_1 600 MQVRKMG-ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEG--GLVLVSHDMRLISQVaNEIWICDDRTI 682
                 7888888.8***********************************9999999998855..69*********9866155656665555 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   2.7e-06   0.00016       3      47 ..     150     194 ..     148     207 .. 0.90
   2 !   44.4   0.0   4.2e-14   2.6e-12     118     208 ..     300     388 ..     280     396 .. 0.78
   3 !   25.1   0.2   3.2e-08     2e-06      16      62 ..     504     550 ..     492     559 .. 0.85
   4 !   41.9   0.0   2.4e-13   1.5e-11      94     212 ..     563     679 ..     555     689 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.7e-06
   TIGR03873   3 rlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrll 47 
                 ++++v+++  g +++d+  v   +G+  gl+G nG+Gkstll+ l
  MMETSP1061-20121228|8945_1 150 NVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 67889999999*******************************976 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 4.2e-14
   TIGR03873 118 vdralarvelss.ladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvv 208
                 ++ +l+  + ++ + +++++ +sGG r rv laral  +P  llldePtnhld++a + l + +++    +   ++  h  ++  +vc h++
  MMETSP1061-20121228|8945_1 300 ARSILSGLGFTHeMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKW---NRILLLVSHSQDFLNNVCSHMI 388
                 55566666665437889999************************************99888888877...4444555577777777777776 PP

  == domain 3    score: 25.1 bits;  conditional E-value: 3.2e-08
   TIGR03873  16 ivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlag 62 
                 + ++v+  +   +  +l+GPnG+Gk+tl++l+aG l+++ G++ + g
  MMETSP1061-20121228|8945_1 504 LYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHG 550
                 5566666666777789*************************998876 PP

  == domain 4    score: 41.9 bits;  conditional E-value: 2.4e-13
   TIGR03873  94 dvvalGriPhrslfaadsdedaevvdralarvelss.ladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldg 212
                 dv+ l ++P     +  +++  e  +++l+r ++s  +  r++  ls G++ rv la+     P++llldePtnhld+++  +l ++v+e   eg   v+  hd+ l  +v++++ + d 
  MMETSP1061-20121228|8945_1 563 DVLDLDKTPLEFFETLYPADPREEQRKYLGRFGVSGpMQVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEY--EGG-LVLVSHDMRLISQVANEIWICDD 679
                 6666777775544444555556778899999999853889******************9999*****************999999999999..555.55556********9999987665 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   6.1e-07   3.7e-05     331     381 ..     145     194 ..     122     207 .. 0.81
   2 !   34.8   0.0   2.6e-11   1.6e-09     464     510 ..     312     359 ..     280     377 .. 0.76
   3 !   37.5   0.0   3.8e-12   2.3e-10     301     393 ..     453     547 ..     440     557 .. 0.79
   4 !   26.3   0.0   9.9e-09   6.1e-07     471     529 ..     607     663 ..     594     664 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 6.1e-07
   TIGR02868 331 ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlall 381
                  + ++++ +++ ++ ga   l++ s+ l+ G+r  ++G+ G+GKstLl++l
  MMETSP1061-20121228|8945_1 145 RARDVNVTNVTLQHMGA-VLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 45567788888888887.569***************************998 PP

  == domain 2    score: 34.8 bits;  conditional E-value: 2.6e-11
   TIGR02868 464 klg.eggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeel 510
                 +++ ++ + +SGG r R+ lARaL  +   llLDEPt hLD e+   l
  MMETSP1061-20121228|8945_1 312 EMQsKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWL 359
                 454146789********************************9986555 PP

  == domain 3    score: 37.5 bits;  conditional E-value: 3.8e-12
   TIGR02868 301 raaaeRie..evldakvevaeasapaaeaaasekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevt 393
                 +++++++   ++++++ e+++ + +   +     p l ++d+s++ypg ++  ++v++ +   +rva+vG+ GaGK+tL++l+ag l++  G++ 
  MMETSP1061-20121228|8945_1 453 EKVLQKMIraGLTPKPEEEKMLNFKFSDPGHLPPPVLAFHDVSFGYPGCQPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIR 547
                 444555443355666666666666666666667799***************************************************99999875 PP

  == domain 4    score: 26.3 bits;  conditional E-value: 9.9e-09
   TIGR02868 471 rlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                  lS G++ R++lA+   +   +llLDEPt hLD e  ++l +++++ e g   vlv+h+
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEGG--LVLVSHD 663
                 69************999999****************99999888776655..4667775 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   9.5e-06   0.00058       3      79 ..     150     226 ..     148     236 .. 0.83
   2 !   40.6   0.0   6.6e-13     4e-11      98     174 ..     285     362 ..     267     390 .. 0.85
   3 !   53.3   0.1   8.6e-17   5.3e-15       2     177 ..     489     652 ..     488     689 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 9.5e-06
   TIGR03864   3 eveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvv 79 
                 +v++++ ++     ld+ s+ +++g+   L+G nG GkstL++ l         +i ++ l+ + +p++ l+ l  v
  MMETSP1061-20121228|8945_1 150 NVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGARALPIPNSIDIFFLKEEVEPSDTLSALDAV 226
                 78889999999999****************************99987776667777777777777777777766655 PP

  == domain 2    score: 40.6 bits;  conditional E-value: 6.6e-13
   TIGR03864  98 haaLhGlsraeaeerieealarlglaerae.ekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalvee 174
                 +  L  l  ++ae r +++l+ lg+++  + +k ++ +GG r rv +aral  +P  LLlDe+t  LD+e+   l ++
  MMETSP1061-20121228|8945_1 285 YERLDALDASTAEVRARSILSGLGFTHEMQsKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENY 362
                 667999999***************9876551679***********************************987666555 PP

  == domain 3    score: 53.3 bits;  conditional E-value: 8.6e-17
   TIGR03864   2 leveglsfaygkrral.ddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqq..stlDldlsveqnlryhaaLhGlsraeaeerieealarlglaerae.ekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevre 177
                 l+ +++sf y  ++ l  +v++ v   + vaL+GpnGaGk+tL++l+++ ++a+ g+i+  G+           +lG   q+    lDld      l+++ +L      + +e+ ++ l r+g++   +  k+ eL+ G++ rv +a+     P++LLlDe+t  LD+es +al ++v+e
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQPLyTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGHL----------KLGRFTQHfvDVLDLDK---TPLEFFETLYPA---DPREEQRKYLGRFGVSGPMQvRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNE 652
                 5667888888555544279****************************************99984..........23332222114577775...589***999865...5556667899*****987661569******************************************99986 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.5e-05    0.0015      19      64 ..     162     209 ..     147     222 .. 0.81
   2 !   44.5   0.0   4.4e-14   2.7e-12     114     209 ..     292     384 ..     282     396 .. 0.80
   3 !   17.4   0.0   8.4e-06   0.00052      21      66 ..     505     550 ..     501     559 .. 0.92
   4 !   33.1   0.0   1.3e-10   8.2e-09     124     217 ..     589     679 ..     577     683 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.5e-05
   TIGR02211  19 evlkgvsleiekgelvaivGssGsGkstllhllgg..ldkptsGevll 64 
                  +l++ s+ +++g+  +++G  G Gkstll  lg+  l  p s ++++
  MMETSP1061-20121228|8945_1 162 VLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGAraLPIPNSIDIFF 209
                 568999999************************972255555656655 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 4.4e-14
   TIGR02211 114 skkeakerakellekvglekrin.kkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkld 209
                 + + a+ ra ++l+ +g+ + ++ kk+ ++sGG r rv++aral  +P ++l dePt +ld ++   + + l + n      ll+v+h +++ +++ 
  MMETSP1061-20121228|8945_1 292 DASTAEVRARSILSGLGFTHEMQsKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWN----RILLLVSHSQDFLNNVC 384
                 56778999************997356789********************************987665555555444....46889999998877654 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 8.4e-06
   TIGR02211  21 lkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkG 66 
                 +++v++ ++    va+vG  G+Gk+tl+ l++g  ++t G++  +G
  MMETSP1061-20121228|8945_1 505 YTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHG 550
                 5799*************************************98777 PP

  == domain 4    score: 33.1 bits;  conditional E-value: 1.3e-10
   TIGR02211 124 ellekvglekrin.kkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdg 217
                 + l ++g++  ++ +k +els G++ rv +a+   + P+++l dePt +ld ++ +++    + + +e++ +l++v+hd++l+ ++ + + + d+
  MMETSP1061-20121228|8945_1 589 KYLGRFGVSGPMQvRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDAL---AKAV-NEYEGGLVLVSHDMRLISQVANEIWICDD 679
                 566666666666525789*********************************9876654...4444.467889************99988877665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   1.9e-05    0.0012       3      61 ..     150     207 ..     149     224 .. 0.86
   2 !   37.5   0.0   6.9e-12   4.2e-10     107     211 ..     289     391 ..     274     394 .. 0.82
   3 !   28.6   0.0   3.6e-09   2.2e-07       2      64 ..     489     551 ..     488     565 .. 0.92
   4 !   26.9   0.0   1.2e-08   7.4e-07     135     208 ..     605     675 ..     583     681 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.9e-05
   TIGR02673   3 elekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevev 61 
                 ++++v++++ +g+  L++ s+ +++g+ + l+G+ G Gk+tllk l +++ p   ++ +
  MMETSP1061-20121228|8945_1 150 NVTNVTLQH-MGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGARALPIPNSIDI 207
                 677888888.77789******************************99988887776666 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 6.9e-12
   TIGR02673 107 rgkkeeeiqkrveevlelvgledkaka.lpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlele 211
                 +  ++++ + r +++l+ +g+++ ++  +++ +sgG + Rv++aRa+  +P  ll DePt  lD e    ++ l + l+k    +++++h ++++++v  ++++++
  MMETSP1061-20121228|8945_1 289 DALDASTAEVRARSILSGLGFTHEMQSkKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEA---VIWLENYLSKWNRILLLVSHSQDFLNNVCSHMIHFT 391
                 5566777888999**********997616789********************************876...555555555566679999999999999988888876 PP

  == domain 3    score: 28.6 bits;  conditional E-value: 3.6e-09
   TIGR02673   2 ielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevage 64 
                 + +++vs+ y++     ++v++ ++  + + l+G+ GaGkttl+kl+ g ++++ G+++ +g+
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGH 551
                 689*********999*******************************************98886 PP

  == domain 4    score: 26.9 bits;  conditional E-value: 1.2e-08
   TIGR02673 135 peelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvl 208
                   els G + Rv +a+   + P++ll DePt  lD e   +i +l k++n++   +++++hd +l+++v++ + 
  MMETSP1061-20121228|8945_1 605 MGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDME---SIDALAKAVNEYEGGLVLVSHDMRLISQVANEIW 675
                 468********************************86...566788899999899999**********988765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.8e-07   2.3e-05       2      46 ..     152     196 ..     151     214 .. 0.91
   2 !   35.2   0.0   2.9e-11   1.8e-09     114     203 ..     299     387 ..     275     390 .. 0.83
   3 !   13.1   0.0   0.00017     0.011      14      49 ..     505     540 ..     500     559 .. 0.83
   4 !   35.6   0.0   2.2e-11   1.3e-09     112     203 ..     584     673 ..     572     676 .. 0.84
   5 ?   -1.6   0.1       5.6   3.4e+02      25      37 ..     783     795 ..     779     797 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.8e-07
   TIGR03608   2 kniskkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgl 46 
                 +n++ +    ++l+++s+ +++G+ + ++G+ G+GKstlL  lg 
  MMETSP1061-20121228|8945_1 152 TNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGA 196
                 78899999999*****************************99985 PP

  == domain 2    score: 35.2 bits;  conditional E-value: 2.9e-11
   TIGR03608 114 kkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpev.aekadrv 203
                 +  ++l  +g+ ++ ++kk  ++sgG + Rv+lar+l+ ++  +l DEPt  LD++   +v+ l + l + ++++++v H++    + + ++
  MMETSP1061-20121228|8945_1 299 RARSILSGLGFtHEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDME---AVIWLENYLSKWNRILLLVSHSQDFlNNVCSHM 387
                 5567788899967788999***********************************86...688888888999*********986514455555 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 0.00017
   TIGR03608  14 lkklslkiekGelvaivGesGsGKstlLnilgllek 49 
                  +++++ ++  + va+vG  G+GK+tl+ +++   +
  MMETSP1061-20121228|8945_1 505 YTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELN 540
                 568999999999*****************9986544 PP

  == domain 4    score: 35.6 bits;  conditional E-value: 2.2e-11
   TIGR03608 112 ekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrv 203
                 ++++ ++l ++g+    + +k+ els+G+k Rv la++    ++++l DEPt  LD+++ +++ + +   +e +  +++v Hd+ + +++ + 
  MMETSP1061-20121228|8945_1 584 REEQRKYLGRFGVsGPMQVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAV---NEYEGGLVLVSHDMRLISQVANE 673
                 67778889999995557789**************************************999877665...555567899*****998887655 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 5.6
   TIGR03608  25 elvaivGesGsGK 37 
                 ++va vG+sGsG 
  MMETSP1061-20121228|8945_1 783 STVATVGTSGSGS 795
                 6799*******96 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   2.9e-06   0.00018       2      48 ..     150     196 ..     149     218 .. 0.90
   2 !   32.3   0.0   2.3e-10   1.4e-08     113     202 ..     302     387 ..     276     413 .. 0.79
   3 !   21.7   0.0   3.9e-07   2.4e-05       4      61 ..     492     550 ..     489     559 .. 0.85
   4 !   33.4   0.0     1e-10   6.3e-09     110     213 ..     586     685 ..     572     702 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.9e-06
   TIGR03410   2 evenlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvg 48 
                 +v+n+++++  + +l + s+ +++g+   ++Grng Gk+tllkal +
  MMETSP1061-20121228|8945_1 150 NVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGA 196
                 6889999999999******************************9865 PP

  == domain 2    score: 32.3 bits;  conditional E-value: 2.3e-10
   TIGR03410 113 eiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladry 202
                 +i++     +em+++++ d sGG +  +++aRaL  +P +llLDePt+ +    +  +e+ +++ ++     +llv ++ df  ++  ++
  MMETSP1061-20121228|8945_1 302 SILSGLGFTHEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWNR----ILLLVSHSQDFLNNVCSHM 387
                 5666667789**************************************9998888888887776655....4667777777777766655 PP

  == domain 3    score: 21.7 bits;  conditional E-value: 3.9e-07
   TIGR03410   4 enlevaYgesevl.rdvslevekgevvavlGrngvGkttllkalvgllkvksGeieleg 61 
                 ++++  Y   + l ++v++ v+ ++ va++G ng+Gkttl+k + g l+++ G i+ +g
  MMETSP1061-20121228|8945_1 492 HDVSFGYPGCQPLyTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHG 550
                 5667777666654279*************************************998776 PP

  == domain 4    score: 33.4 bits;  conditional E-value: 1e-10
   TIGR03410 110 ipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvae 213
                  + + +  F v   m+ R+ G+Ls Gq+  + +a+     P++llLDePt+ +    i+ ++k+++e     + +++lv + + +  ++a+++++ +  ++++ 
  MMETSP1061-20121228|8945_1 586 EQRKYLGRFGVSGPMQVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEY----EGGLVLVSHDMRLISQVANEIWICDDRTITKY 685
                 55667788999999****************************************99998888888765....45899*****************9998777653 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.8e-06   0.00011       7      40 ..     163     196 ..     158     217 .. 0.87
   2 !   30.3   0.0     9e-10   5.5e-08     103     171 ..     295     364 ..     268     376 .. 0.85
   3 !   29.7   0.0   1.4e-09   8.8e-08       8      53 ..     505     550 ..     498     556 .. 0.89
   4 !   26.6   0.0   1.2e-08   7.6e-07     120     190 .]     600     667 ..     580     667 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.8e-06
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnG 40 
                  l++ ++ +++g++ +l+G+nG+Gkstll+ l  
  MMETSP1061-20121228|8945_1 163 LLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGA 196
                 6788899999********************9965 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 9e-10
   TIGR01166 103 everrvrealaavdisg.leerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilr 171
                  +e r r  l+ ++ ++ ++++ t+ +sgG + rv++a a+ ++p  llldePt  ld + +  l + l+
  MMETSP1061-20121228|8945_1 295 TAEVRARSILSGLGFTHeMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLS 364
                 445566788999997653899*************************************998877766665 PP

  == domain 3    score: 29.7 bits;  conditional E-value: 1.4e-09
   TIGR01166   8 lkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldG 53 
                  +++n+ v+  +++al+G+nGaGk+tl++ ++G l+ + G +  +G
  MMETSP1061-20121228|8945_1 505 YTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHG 550
                 678*************************************998776 PP

  == domain 4    score: 26.6 bits;  conditional E-value: 1.2e-08
   TIGR01166 120 leerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdla 190
                 ++ r +  ls G+k rv +a      p++llldePt  ld +  + l++++++       +v+ +hd+ l+
  MMETSP1061-20121228|8945_1 600 MQVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNE---YEGGLVLVSHDMRLI 667
                 56688899********************************9998888887765...444688889*99885 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.8e-07   4.8e-05       3      48 ..     151     196 ..     149     243 .. 0.78
   2 !   29.0   0.0   2.7e-09   1.7e-07     100     171 ..     295     367 ..     277     406 .. 0.77
   3 !   26.4   0.0   1.7e-08   1.1e-06      14      62 ..     503     551 ..     490     570 .. 0.88
   4 !   27.4   0.1   8.4e-09   5.1e-07     119     208 ..     602     689 ..     597     702 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 7.8e-07
   TIGR03740   3 tknlskkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltG 48 
                 + n++ ++    ++++ s+ +++ + ygl+G nG+Gkstllk l  
  MMETSP1061-20121228|8945_1 151 VTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGA 196
                 66788888888999****************************9864 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 2.7e-09
   TIGR03740 100 lpesrieevlkivdlen.tekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfp 171
                   e r  ++l+ +++++ ++ kk+k+fs G + r+ +a al+ +P  l+ldePtn ld   +  l + +  ++
  MMETSP1061-20121228|8945_1 295 TAEVRARSILSGLGFTHeMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWN 367
                 45567778888888876157899***********************************877777766665554 PP

  == domain 3    score: 26.4 bits;  conditional E-value: 1.7e-08
   TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgr 62 
                  +  nv++ v+ +s  +l+GpnGaGk+tl+kl++G l+ t G+i  +g+
  MMETSP1061-20121228|8945_1 503 PLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGH 551
                 566899999**9********************************88776 PP

  == domain 4    score: 27.4 bits;  conditional E-value: 8.4e-09
   TIGR03740 119 kkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGkl.kyekki 208
                  +k +++s G k r+ +a    + P++l+ldePtn ld   i+ l + ++ ++     ++l sh +  ++++a++i i  + ++ ky++ i
  MMETSP1061-20121228|8945_1 602 VRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEG---GLVLVSHDMRLISQVANEIWICDDRTItKYQGDI 689
                 578999*************99***********************9999998754...467889***************9987763677765 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0012     0.072       9      40 ..     164     195 ..     158     204 .. 0.86
   2 !   41.3   0.1   3.9e-13   2.4e-11      90     219 ..     285     415 ..     224     471 .. 0.76
   3 !   23.0   0.1   1.5e-07     9e-06      11      53 ..     507     549 ..     502     552 .. 0.88
   4 !   35.0   0.1   3.2e-11   1.9e-09     119     250 ..     602     730 ..     579     769 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0012
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLt 40 
                 +d+ ++ +++g+ +gl+G nG GK+t++k L 
  MMETSP1061-20121228|8945_1 164 LDETSVVLNHGNRYGLIGRNGCGKSTLLKALG 195
                 5777888999******************9886 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 3.9e-13
   TIGR01188  90 lgelyglpkkeaeeraeellelvelke.aadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladr.vaiidkGkiiaedtpee..LKervgkev 219
                 + +l  l  ++ae ra+ +l  + +++  + kk k +sgG r r++la++l  qP  l LDEPt  LD ++   + ++++   k +  +ll +h  +  ++++++ +   ++  ++  d+  +  +K++ +ke 
  MMETSP1061-20121228|8945_1 285 YERLDALDASTAEVRARSILSGLGFTHeMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLS---KWNRILLLVSHSQDFLNNVCSHmIHFTNQKSLVYYDGNYDqfVKTKSEKEE 415
                 45677889999*************986256799***********************************986555445544...446689999999999999997625567777777777654311344443333 PP

  == domain 3    score: 23.0 bits;  conditional E-value: 1.5e-07
   TIGR01188  11 gvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarva 53 
                 +vn+ v+ ++ ++l+GPnGAGKtt++k++++ l+ + G  r  
  MMETSP1061-20121228|8945_1 507 NVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPH 549
                 7999**************************9999888876655 PP

  == domain 4    score: 35.0 bits;  conditional E-value: 3.2e-11
   TIGR01188 119 dkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiia.edtpeeLKervgkevveverrdikelkkevsllaaeltesllelea 250
                  +k++++s G++ r+ la    + P++l LDEPt  LD ++ +a+ + +   ++ +  ++l +h++  + ++a+++ i d  +i + ++ + + K  + k+   +e+++  +l+ ++s++a+e ++++++ ++
  MMETSP1061-20121228|8945_1 602 VRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAV---NEYEGGLVLVSHDMRLISQVANEIWICDDRTITKyQGDIMNFKMDMRKQL-GIEEQQGGKLQGDASVKASEAKTKKEKPKK 730
                 58999**************999****************99877766655...556678999*******************9999983577899999887776.556666666665555554444444322221 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   6.8e-06   0.00041       4      66 ..     151     213 ..     149     219 .. 0.83
   2 !   30.9   0.0   7.4e-10   4.5e-08     113     210 ..     294     389 ..     277     394 .. 0.82
   3 !   29.3   0.0   2.3e-09   1.4e-07       2      73 ..     489     560 ..     488     567 .. 0.88
   4 !   23.9   0.0     1e-07   6.4e-06     123     207 ..     591     673 ..     577     680 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 6.8e-06
   TIGR00960   4 feqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekp..saGkirvsgqd 66 
                 + +v+ ++ ga    ld+ +v +++G+   l+G  G+Gkstllk + +++ p  ++ +i + +++
  MMETSP1061-20121228|8945_1 151 VTNVTLQHMGAVL--LDETSVVLNHGNRYGLIGRNGCGKSTLLKALGARALPipNSIDIFFLKEE 213
                 6789999999988..******************************99888652166666666655 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 7.4e-10
   TIGR00960 113 reieervsaalekvGlkdkak.alPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvlt 210
                   +e r++  l  +G+++  + +  +++sgG + rv++ara+  +P  ll dePt  ld e    + + l + nr    +l+ +h ++++++   ++++
  MMETSP1061-20121228|8945_1 294 STAEVRARSILSGLGFTHEMQsKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWNR---ILLLVSHSQDFLNNVCSHMIH 389
                 56788999999999*998765167789********************************9987776666666666...477788888888887777665 PP

  == domain 3    score: 29.3 bits;  conditional E-value: 2.3e-09
   TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgq.dltklrdr 73 
                 + f++vs  y+g +     nv++ ++  + v lvG+ GaGk+tl+kl+ g  +++ G+ir  g+ +l+++ ++
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQP-LYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGHlKLGRFTQH 560
                 6799*******9765.89******************************************9887456666655 PP

  == domain 4    score: 23.9 bits;  conditional E-value: 1e-07
   TIGR00960 123 lekvGlkdkak.alPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkr 207
                 l + G+++  + +   +ls G++ rv +a+   + P++ll dePt  ld e    i  l + vn+    +++ +hd  l+++  + 
  MMETSP1061-20121228|8945_1 591 LGRFGVSGPMQvRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMES---IDALAKAVNEYEGGLVLVSHDMRLISQVANE 673
                 55566665443144458********************************975...5567789999888888899******998766 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.7e-06   0.00011       4      66 ..     151     214 ..     149     227 .. 0.80
   2 !   38.5   0.0     3e-12   1.8e-10     123     232 ..     297     405 ..     276     413 .. 0.77
   3 !   18.6   0.0   3.5e-06   0.00021       2      59 ..     489     546 ..     488     555 .. 0.87
   4 !   23.6   0.0     1e-07   6.2e-06     117     212 ..     578     670 ..     564     691 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.7e-06
   TIGR02315   4 venlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinr..lveissgsillegkev 66 
                 v+n++ ++  g   l+++++ +++G+  ++iG+ G Gkstll+++    l  ++s +i++ ++ev
  MMETSP1061-20121228|8945_1 151 VTNVTLQHM-GAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGAraLPIPNSIDIFFLKEEV 214
                 667777776.8899*****************************9963125556777777777766 PP

  == domain 2    score: 38.5 bits;  conditional E-value: 3e-12
   TIGR02315 123 kekAlelLervglae.laakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkage..ivfdgasse 232
                 + +A ++L+ +g+++ +++k++++ sGG + Rv++aRal  qp  +l DEP+  LD ++   + ++l + n    i   +  H+ d+ ++ +++++ + + +  + +dg+ ++
  MMETSP1061-20121228|8945_1 297 EVRARSILSGLGFTHeMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWN---RILL-LVSHSQDFLNNVCSHMIHFTNQKslVYYDGNYDQ 405
                 5689999999999752678999**********************************987666555555444...4555.555999**********998654332666766655 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 3.5e-06
   TIGR02315   2 levenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsi 59 
                 l ++++s  yp+ +    nvn+ ++    va++G+ GaGk+tl++ + +  + + g+i
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDI 546
                 778999999**8888999***************************9987777777766 PP

  == domain 4    score: 23.6 bits;  conditional E-value: 1e-07
   TIGR02315 117 lfseedkekAlelLervglae.laakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakky 212
                 l++ + +e+  + L r+g++  ++ +++ +Ls Gq+ Rv +a+   + p+++l DEP+  LD +s   +    k +n+ +g  v+v+ H++ l  + 
  MMETSP1061-20121228|8945_1 578 LYPADPREEQRKYLGRFGVSGpMQVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDAL---AKAVNEYEGGLVLVS-HDMRLISQV 670
                 56666777888999999999725567799*********************************9886654...455666666666655.666666555 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.4e-06   8.9e-05      21      70 ..     158     209 ..     145     222 .. 0.77
   2 !   38.6   0.0   2.8e-12   1.7e-10     107     222 ..     277     388 ..     257     405 .. 0.81
   3 !   14.0   0.0   9.5e-05    0.0058      24      72 ..     502     550 ..     492     559 .. 0.89
   4 !   28.9   0.0   2.6e-09   1.6e-07     113     245 ..     570     696 ..     564     702 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.4e-06
   TIGR02769  21 kqrkavldnvslsleeGetvallGrsGaGkstlarlllG..lekPakGevsf 70 
                 +  + +ld+ s+ l++G+  +l+Gr G+Gkstl + l    l  P++ +++f
  MMETSP1061-20121228|8945_1 158 HMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGAraLPIPNSIDIFF 209
                 55567899*************************9987431145555666666 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 2.8e-12
   TIGR02769 107 vreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvl 222
                 +   ++   ++l  ld+s  + r+  +l+ +++ +e+  k+ +++sGG   r+++aral ++P  ++lde    ld+   +     l++   +     l+++h     ++++ +++
  MMETSP1061-20121228|8945_1 277 IMDALNAVYERLDALDASTAEVRARSILSGLGFTHEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVI----WLENYLSKWNRILLLVSHSQDFLNNVCSHMI 388
                 444555556788999*************************************************************96543....4444445555667888888888888887766 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 9.5e-05
   TIGR02769  24 kavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrG 72 
                 +++ +nv++ ++    val+G  GaGk+tl +l+ G  + + G+++ +G
  MMETSP1061-20121228|8945_1 502 QPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHG 550
                 67789999999999**********************9999999998766 PP

  == domain 4    score: 28.9 bits;  conditional E-value: 2.6e-09
   TIGR02769 113 ePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaellsfkhpa 245
                  Pl+ +++l  ++ ++   + l   +++  +  ++  +ls Gq  r+ +a+     P++++lde    ld+      ++ l k  +e     ++++hd+rl+ ++a+++ + d+  i     +++ + fk + 
  MMETSP1061-20121228|8945_1 570 TPLEFFETLYPADPREEQRKYLGRFGVSGPMQVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMES----IDALAKAVNEYEGGLVLVSHDMRLISQVANEIWICDDRTITKY--QGDIMNFKMDM 696
                 5899999999999999999999999999999999999**************9999***************964....4444454555555789******************999887543..44555555555 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.5e-05   0.00093       3      47 ..     151     195 ..     149     218 .. 0.88
   2 !   22.1   0.1   3.5e-07   2.1e-05     108     172 ..     300     365 ..     274     381 .. 0.79
   3 !   62.1   0.0     2e-19   1.2e-17      13     191 ..     502     669 ..     498     676 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.5e-05
   TIGR01189   3 aeelaveRgervlleglsfelaaGealvveGpnGiGKttLLRila 47 
                 +++++ +  + vll + s+ l+ G+   + G+nG GK+tLL+ l 
  MMETSP1061-20121228|8945_1 151 VTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALG 195
                 67889999999******************************9985 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 3.5e-07
   TIGR01189 108 veealekvgLsg.ledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaa 172
                 +   l  +g ++ ++   ++  s G + R++lar l  +    +LDEPt  lD e+v  l++ l++
  MMETSP1061-20121228|8945_1 300 ARSILSGLGFTHeMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSK 365
                 566667777765155677899************************************999988765 PP

  == domain 3    score: 62.1 bits;  conditional E-value: 2e-19
   TIGR01189  13 rvlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgLsgled.lpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdlglk 191
                 + l+++++f +     ++++GpnG+GKttL++++aG l+++ G ++ +  +l+  r     + +++  ld  K+ L   E L  y a+ ++   +  + l + g+sg  + + + +Ls Gqk R+ la+L  +   + +LDEPt  lD e+++ la++++++  +gG+vl++  + l ++
  MMETSP1061-20121228|8945_1 502 QPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPH-GHLKLGR--F--TQHFVDVLDLDKTPLEFFETL--YPADPRE---EQRKYLGRFGVSGPMQvRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEY--EGGLVLVSHDMRLISQ 669
                 5678899999999999******************************99.4445444..3..346777677667766666654..4444444...45899*******976625799********************************************996..7999998877776655 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.5e-05   0.00095       3      51 ..     149     197 ..     147     218 .. 0.87
   2 !   36.9   0.0   9.6e-12   5.8e-10     110     246 ..     296     433 ..     278     464 .. 0.79
   3 !   44.7   0.0     4e-14   2.5e-12      15     219 ..     502     692 ..     489     711 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.5e-05
   TIGR03522   3 vevsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgy 51 
                 v+v++++ ++     lde s   ++G+  G++G nG Gkstl+k l + 
  MMETSP1061-20121228|8945_1 149 VNVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGAR 197
                 789999999999999*****************************98765 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 9.6e-12
   TIGR03522 110 lkkrveelielvGlkae.qhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGk..ivadkkleelkaaekkkvievefeeeidlqlleklee 246
                  + r + ++   G+++e q kk  ++s G+r rv la+al  +P  l+ldePt  ld + ++ + + + +   ++ ++l +h    ++ +c ++i   + k  +  d + +++++++++k  +   +++ +++ +++++e
  MMETSP1061-20121228|8945_1 296 AEVRARSILSGLGFTHEmQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKW--NRILLLVSHSQDFLNNVCSHMIHFTNQKslVYYDGNYDQFVKTKSEKEENQWKQYKWEQDSIKQMKE 433
                 556777888889999885789*******************************************9998875..67899999*9999*******99775544114568888888877777766666666666666666665 PP

  == domain 3    score: 44.7 bits;  conditional E-value: 4e-14
   TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlk.aeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkiva.dkkleel 219
                 q    +v f ++  + v ++GPnGaGk+tl+k+++g l+a+ G +  +g+           ++G + +h    ldl  +  lef  +ly  +    +++ ++ + + G++ + q +k+g+ls G + rv lak     P++l+ldePt  ld + + ++ + ++e   +  ++l +h m+ +  + +++ i +   i   + ++ ++
  MMETSP1061-20121228|8945_1 502 QPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGHL----------KLGRFTQHFVDVLDLD-KTPLEFFETLYPADP---REEQRKYLGRFGVSgPMQVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEY--EGGLVLVSHDMRLISQVANEIWICDDRTITKyQGDIMNF 692
                 5566789999999999****************************9988863..........4677777777777775.7789*******9994...4444678899998636899*************************************99887777766664..567899999999999999999998877775413455555 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.7e-05    0.0029       3      47 ..     150     194 ..     148     203 .. 0.88
   2 !   39.6   0.0   1.3e-12   7.8e-11     100     239 ..     279     414 ..     268     420 .. 0.77
   3 !   13.5   0.0   0.00012    0.0076       7      64 ..     494     553 ..     488     569 .. 0.78
   4 !   30.3   0.0   9.1e-10   5.6e-08     144     217 ..     607     678 ..     600     700 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.7e-05
   TIGR00972   3 evknlklfygekealkdvnleikknkvtaliGpsGcGkstllrsl 47 
                 +v+n++l +     l++ ++ +++ +  +liG  GcGkstll++l
  MMETSP1061-20121228|8945_1 150 NVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 567788888888889999999999999****************98 PP

  == domain 2    score: 39.6 bits;  conditional E-value: 1.3e-12
   TIGR00972 100 dnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffl.eGelveegeteqifekpkekkt 239
                 d +   ++  +  d ++ + ++++ L++ ++  e+++   k++   sGG + r+++aral ++P  lLlDePt  LD +a+  +e+ +++ +    +++v h+ ++ + v  +++ f+ + +lv ++   + f k+k++k 
  MMETSP1061-20121228|8945_1 279 DALNAVYERLDALDASTAEVRARSILSGLGFTHEMQS---KKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWN--RILLLVSHSQDFLNNVCSHMIHFTnQKSLVYYDGNYDQFVKTKSEKE 414
                 5555555555555666666677777777777766664...567789*****************************************99765..57899*******99998877776515678887777777777776654 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 0.00012
   TIGR00972   7 lklfygekeal.kdvnleikknkvtaliGpsGcGkstllrsln.rlndlveevrieGkvl 64 
                 +++ y   + l ++vn+ +  ++ +al+Gp G+Gk+tl++ +   ln ++ ++r +G++ 
  MMETSP1061-20121228|8945_1 494 VSFGYPGCQPLyTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAgELNATLGDIRPHGHLK 553
                 555565555432689999999999****************98637899998898888875 PP

  == domain 4    score: 30.3 bits;  conditional E-value: 9.1e-10
   TIGR00972 144 sLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffl 217
                 +Ls Gq+ r+++a+     P++lLlDePt  LD ++   + + ++e +    +v+v h+m   ++v++++ +  
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEG--GLVLVSHDMRLISQVANEIWICD 678
                 79************99999*****************9999999999876..689********999998876654 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00015    0.0092     317     364 ..     149     194 ..     141     206 .. 0.85
   2 !   31.8   0.0     2e-10   1.2e-08     451     522 ..     317     385 ..     307     407 .. 0.83
   3 !   22.5   0.0   1.3e-07   7.9e-06     317     377 ..     489     548 ..     416     561 .. 0.90
   4 !   30.5   0.0   4.7e-10   2.9e-08     454     534 ..     607     685 ..     600     694 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00015
   TIGR01842 317 levenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarll 364
                 ++v nv+l++ ++    l + s++l+ G+  ++iG  g Gks+L + l
  MMETSP1061-20121228|8945_1 149 VNVTNVTLQHMGA--VLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 6677777776655..599***************************987 PP

  == domain 2    score: 31.8 bits;  conditional E-value: 2e-10
   TIGR01842 451 gGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdk 522
                 + +  sgG r R++LaRal+ +P  ++LDeP   LD e  + l + l    + +++ ++++h    l+ v  
  MMETSP1061-20121228|8945_1 317 KTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLS---KWNRILLLVSHSQDFLNNVCS 385
                 55779********************************98888888765...556788999999988887754 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 1.3e-07
   TIGR01842 317 levenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrl 377
                 l+  +vs+  p+ + +  ++++f ++  + +a++Gp g+Gk++L++l+ G  + + G +r 
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQ-PLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRP 548
                 66677888888776.8999**************************************9995 PP

  == domain 4    score: 30.5 bits;  conditional E-value: 4.7e-10
   TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv.dkilvlkdGalkaf 534
                 +Ls Gq+ R+ La+     P++++LDeP   LD e   alaka++e    +   v+++h ++l+++v ++i + +d +++++
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEY---EGGLVLVSHDMRLISQVaNEIWICDDRTITKY 685
                 69*************9***************************9875...5678899****999765388999999888776 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.032         2      21      53 ..     164     196 ..     149     222 .. 0.82
   2 !   38.4   0.0   3.4e-12   2.1e-10     111     205 ..     289     380 ..     277     394 .. 0.76
   3 !   13.9   0.0   0.00011    0.0067      22      63 ..     506     547 ..     501     565 .. 0.84
   4 !   37.6   0.0   5.9e-12   3.6e-10     108     215 ..     573     678 ..     560     683 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.032
   TIGR02982  21 lfdinleiepgeiviltGpsGsGkttlltligg 53 
                 l + ++ +++g+   l G  G+Gk tll  +g+
  MMETSP1061-20121228|8945_1 164 LDETSVVLNHGNRYGLIGRNGCGKSTLLKALGA 196
                 56677888888888999************9997 PP

  == domain 2    score: 38.4 bits;  conditional E-value: 3.4e-12
   TIGR02982 111 eklsakeakakaeelleavgleerld.ykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnril 205
                 ++l a++a+ +a+++l+ +g+ ++++ +k +d+sgG + rv++aral  +P  +l dePt  ld ++   v+ l + l+ + +  +llv h +  l
  MMETSP1061-20121228|8945_1 289 DALDASTAEVRARSILSGLGFTHEMQsKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEA---VIWLENYLS-KWNRILLLVSHSQDFL 380
                 55677889999**********9988626789*********************************975...333333333.3444567777766555 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 0.00011
   TIGR02982  22 fdinleiepgeiviltGpsGsGkttlltligglrsvqeGelk 63 
                  ++n+ ++ +  v l Gp G+Gkttl+ l++g  ++  G+++
  MMETSP1061-20121228|8945_1 506 TNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIR 547
                 578999999999******************998777777776 PP

  == domain 4    score: 37.6 bits;  conditional E-value: 5.9e-12
   TIGR02982 108 elkeklsakeakakaeelleavgleerldy.kpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr.ildvadrivkme 215
                 e+ e+l  ++ +++ ++ l   g+   ++  k  +ls+Gqk rv +a+   + P+++l dePt  ld +s    ++ l k  +e    ++lv hd r i +va+ i   +
  MMETSP1061-20121228|8945_1 573 EFFETLYPADPREEQRKYLGRFGVSGPMQVrKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMES----IDALAKAVNEYEGGLVLVSHDMRlISQVANEIWICD 678
                 66677778899999999999999999887526789********************************998....556677777888899********4557998886655 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0065       0.4       3      26 ..     171     194 ..     169     206 .. 0.88
   2 !   31.0   0.0   6.8e-10   4.2e-08     105     186 ..     312     390 ..     294     418 .. 0.80
   3 !   18.4   0.0     5e-06    0.0003       7      42 ..     516     551 ..     510     563 .. 0.84
   4 !   35.8   0.0   2.4e-11   1.4e-09     107     195 ..     601     686 ..     592     706 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0065
   TIGR03771   3 vdkGellgllGpnGaGkttllrai 26 
                 +++G+  gl+G nG Gk+tll+a+
  MMETSP1061-20121228|8945_1 171 LNHGNRYGLIGRNGCGKSTLLKAL 194
                 5789999**************997 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 6.8e-10
   TIGR03771 105 eladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvll 186
                 e++++   ++sGG r rv +aral ++p  llldep   ld+ +   l    + l++ ++ +l+++h      ++c+ ++ +
  MMETSP1061-20121228|8945_1 312 EMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLE---NYLSKWNRILLLVSHSQDFLNNVCSHMIHF 390
                 567788899********************************97665555...567777888999999888878888877655 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 5e-06
   TIGR03771   7 ellgllGpnGaGkttllrailglikvakGsvkvagk 42 
                   ++l+GpnGaGkttl++ + g ++++ G ++  g+
  MMETSP1061-20121228|8945_1 516 SRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGH 551
                 5689********************999999987764 PP

  == domain 4    score: 35.8 bits;  conditional E-value: 2.4e-11
   TIGR03771 107 adrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadga 195
                 + r +Gels Gq+ rv++a+     p++llldep   ld+ s++ l++ ++e    +  +++++hd+    ++++ + + + r +++ +
  MMETSP1061-20121228|8945_1 601 QVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNE---YEGGLVLVSHDMRLISQVANEIWICDDRTITKYQ 686
                 5699************************************999998876665...5668999*****9999999999999988887655 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   0.00012    0.0072       2      47 ..     150     195 ..     149     216 .. 0.86
   2 !   32.9   0.0   1.6e-10   9.5e-09     113     201 ..     302     387 ..     283     402 .. 0.75
   3 !   21.4   0.0   5.3e-07   3.2e-05      17      61 ..     506     550 ..     490     556 .. 0.87
   4 !   24.7   0.0   5.2e-08   3.2e-06     126     210 ..     603     683 ..     589     691 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 0.00012
   TIGR00968   2 lianvskrfGdfqalddvdlevktGslvallGpsGsGkstllrvia 47 
                 +++nv+ ++   + ld+ ++ +++G+  +l+G  G Gkstll+++ 
  MMETSP1061-20121228|8945_1 150 NVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALG 195
                 68899999999999*****************************985 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1.6e-10
   TIGR00968 113 ellelvqle.klgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadri 201
                  +l+ ++++ +++++  +++sGG r rv+laral ++p  llldep   ld +       wl +   + +   ++v+h q+   +v  ++
  MMETSP1061-20121228|8945_1 302 SILSGLGFThEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAV----IWLENYLSKWNRILLLVSHSQDFLNNVCSHM 387
                 555555554158899999*********************************8654....4555555555556667777777666666555 PP

  == domain 3    score: 21.4 bits;  conditional E-value: 5.3e-07
   TIGR00968  17 ddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleG 61 
                  +v++ v+  s val+Gp G+Gk+tl++++aG  + + G i+ +G
  MMETSP1061-20121228|8945_1 506 TNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHG 550
                 689*****************************9999999998877 PP

  == domain 4    score: 24.7 bits;  conditional E-value: 5.2e-08
   TIGR00968 126 rypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkie 210
                 r   +ls Gq+ rv la+     p++llldep   ld +  + l     k  +e +   v+v+hd     +va++i + ++  i 
  MMETSP1061-20121228|8945_1 603 RKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALA----KAVNEYEGGLVLVSHDMRLISQVANEIWICDDRTIT 683
                 555689************99999**************98776655....5566777788*****************998877765 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.1   9.3e-16   5.7e-14       1     277 [.     149     425 ..     149     438 .. 0.72
   2 !   12.1   0.0   0.00019     0.011     302     341 ..     507     546 ..     502     565 .. 0.89
   3 !   31.4   0.1   2.6e-10   1.6e-08     426     502 ..     606     678 ..     600     706 .. 0.71

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 9.3e-16
   TIGR03269   1 ievenltkkfdglevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkiiyhvalcekcgyverpskvGekcpkcgeklekeevdfwdlsdklkkrlkk....riaimlqrtfalyeed..tvlenvlealeeigyeakeavkravelleevklehrit.hiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillek..GeiveeGepeevvakflesvsevekekevevge 277
                 ++v n+t +  g   l + s+ l+ G+  G++G+ G+Gks ll+ l       p+s  i +     e  + +   + v e  +    kle++  d+ +l  ++  + +k      +   q++    +e+    l+ v e l+ ++  a  a  ra  +l    + h +  + ++d+sGG + rv lar l  +p++ll dept  ld ++   + + l     + +  l+l sh  + +++++ + i + +    +   G+ ++ v+   e+ ++  k+ + e  +
  MMETSP1061-20121228|8945_1 149 VNVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGARALPIPNSIDIFFLKEEVEPSDTLSALDAVMEV-DEERTKLEQQADDLNKLISEVIDNPEKfsneDSSGEPQKSSEELQEEimDALNAVYERLDALD--ASTAEVRARSILSGLGFTHEMQsKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLS----KWNRILLLVSHSQDFLNNVCSHMIHFTNqkSLVYYDGNYDQFVKTKSEKEENQWKQYKWE--Q 425
                 5799******************************************88888789999999988777777777766666543.335567888777777766555444333000023333444433322221123444444444444..4456779999**********973579**********************************998776666655....456678899***************986511557788999888887766665555544333..3 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 0.00019
   TIGR03269 302 nvslevkekeifGlvGtsGaGkttlskilaGvleptsGev 341
                 nv++ v       lvG  GaGkttl k++aG l+ t G++
  MMETSP1061-20121228|8945_1 507 NVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDI 546
                 6778888888889*********************999986 PP

  == domain 3    score: 31.4 bits;  conditional E-value: 2.6e-10
   TIGR03269 426 delseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmr 502
                  els+G++ rv la++    p+i++ldept  +d     +  +++ ka +e e   v+vshdm ++ +v + + +  
  MMETSP1061-20121228|8945_1 606 GELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDM----ESIDALAKAVNEYEGGLVLVSHDMRLISQVANEIWICD 678
                 57888888888888877777888888888888773....44567777778888888888888888877765554443 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0      0.03       1.8      21      43 ..     172     194 ..     153     207 .. 0.75
   2 !   40.9   0.0   5.4e-13   3.3e-11     104     207 ..     292     392 ..     280     422 .. 0.83
   3 !   17.6   0.0   6.5e-06    0.0004      16      56 ..     508     548 ..     504     555 .. 0.85
   4 !   28.4   0.0   3.3e-09     2e-07     123     212 ..     599     684 ..     586     737 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.03
   TIGR02142  21 pgkgvtalFGrsGsGktslirli 43 
                 +  ++ +l Gr G+Gk++l++++
  MMETSP1061-20121228|8945_1 172 NHGNRYGLIGRNGCGKSTLLKAL 194
                 3346789*************987 PP

  == domain 2    score: 40.9 bits;  conditional E-value: 5.4e-13
   TIGR02142 104 raeerriseekvielLgiehLle.RlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvled 207
                 +a++ +++  ++++ Lg  h ++ +++++ sGG + Rv+++RAl  +P  Ll+DeP   LD++     + +Le+  ++ +  +l+vsHs d ++ +  +++ + +
  MMETSP1061-20121228|8945_1 292 DASTAEVRARSILSGLGFTHEMQsKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEA----VIWLENYLSKWNRILLLVSHSQDFLNNVCSHMIHFTN 392
                 5677789999********99776378999********************************964....568888888888889*******999999999886655 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 6.5e-06
   TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivl 56 
                 v++ ++ + ++al G  G+Gkt+l++l+aG ++++ g i  
  MMETSP1061-20121228|8945_1 508 VNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRP 548
                 6667777789********************99999998865 PP

  == domain 4    score: 28.4 bits;  conditional E-value: 3.3e-09
   TIGR02142 123 hLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvka 212
                 ++  R+ g+Ls G k Rv +++     P++Ll+DeP   LD+++    +  L +  +e +  +++vsH++  + ++a+++ + +d  ++ 
  MMETSP1061-20121228|8945_1 599 PMQVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMES----IDALAKAVNEYEGGLVLVSHDMRLISQVANEIWICDDRTITK 684
                 6778******************9999***************977....566899999***********************9999877653 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   7.9e-05    0.0048     480     524 ..     151     193 ..     129     213 .. 0.86
   2 !   29.8   0.0   6.1e-10   3.7e-08     610     671 ..     315     376 ..     290     410 .. 0.87
   3 !   31.8   0.0   1.6e-10   9.6e-09     479     540 ..     490     550 ..     444     563 .. 0.89
   4 !   16.5   0.0   6.8e-06   0.00042     615     683 ..     607     676 ..     600     688 .. 0.87
   5 ?   -3.2   0.4       5.9   3.6e+02     506     518 ..     783     795 ..     781     797 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.9e-05
   TIGR03796 480 lrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiakl 524
                 ++nvt   +++ a l+++ s+ l++G+r  l+G  G+Gkst+ k 
  MMETSP1061-20121228|8945_1 151 VTNVTL--QHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKA 193
                 455544..566789***************************9875 PP

  == domain 2    score: 29.8 bits;  conditional E-value: 6.1e-10
   TIGR03796 610 aegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHR 671
                 ++  +++sGG r R+ +ARaL  +P  L+lDE t  LD e+   +++ l + +   ++v+H 
  MMETSP1061-20121228|8945_1 315 SKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWNRILLLVSHS 376
                 467899*********************************************99999999995 PP

  == domain 3    score: 31.8 bits;  conditional E-value: 1.6e-10
   TIGR03796 479 elrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDg 540
                  +++v+fgy    +pl  ++++ ++  +rvAlvG+ G+Gk t+ kl+aG  + + G+i+  g
  MMETSP1061-20121228|8945_1 490 AFHDVSFGYPGC-QPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHG 550
                 6799*****988.8*************************************99999998666 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 6.8e-06
   TIGR03796 615 nlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiRd.cdeiiv 683
                  ls Gq+ R+ +A+   + P iL+lDE t  LD e   a+ +++ +     ++v+H +  i + ++ei +
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEGGLVLVSHDMRLISQvANEIWI 676
                 589*****************************************************98888662455555 PP

  == domain 5    score: -3.2 bits;  conditional E-value: 5.9
   TIGR03796 506 qrvAlvGgsGsGk 518
                 + vA vG+sGsG 
  MMETSP1061-20121228|8945_1 783 STVATVGTSGSGS 795
                 679********96 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0017       0.1       2      46 ..     150     194 ..     149     200 .. 0.87
   2 !   39.9   0.0   9.6e-13   5.9e-11     117     240 ..     290     412 ..     275     421 .. 0.80
   3 !   10.8   0.0    0.0007     0.043      18      47 ..     507     536 ..     491     561 .. 0.81
   4 !   26.9   0.0   8.9e-09   5.4e-07     146     225 ..     607     682 ..     577     695 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0017
   TIGR03005   2 risdvtkrfgeltvldglelevaaGekvaliGpsGsGkstilril 46 
                 ++++vt ++    +ld+ ++ +++G++  liG  G Gkst+l+ l
  MMETSP1061-20121228|8945_1 150 NVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 566777766677799***************************977 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 9.6e-13
   TIGR03005 117 GvaraeaekravelldmvGladkadal.paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGk..iveeGkpdeifrkpke 240
                  +  + ae ra  +l  +G++  +++     +sGG + rv++aral ++p  ll+de+t  ld e v  + n      s+ +  +llv+h   f ++++  ++ f + k  +  +G+ d+  ++  e
  MMETSP1061-20121228|8945_1 290 ALDASTAEVRARSILSGLGFTHEMQSKkTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENY----LSKWNRILLLVSHSQDFLNNVCSHMIHFTNQKslVYYDGNYDQFVKTKSE 412
                 566788999***********998876515689*******************************9877655554....45667789***************999997554326788888886665433 PP

  == domain 3    score: 10.8 bits;  conditional E-value: 0.0007
   TIGR03005  18 glelevaaGekvaliGpsGsGkstilrilm 47 
                 ++++ v+   +val+Gp G+Gk+t+++++ 
  MMETSP1061-20121228|8945_1 507 NVNFGVDLDSRVALVGPNGAGKTTLVKLMA 536
                 6788999999***************99764 PP

  == domain 4    score: 26.9 bits;  conditional E-value: 8.9e-09
   TIGR03005 146 qlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGki 225
                 +ls Gqk rv +a+     p++ll+de+t  ld e +    + l +  +e +  ++lv+h+m++  ++a+ +   d   i
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESI----DALAKAVNEYEGGLVLVSHDMRLISQVANEIWICDDRTI 682
                 79*************99****************8765....5678888999******************99887766555 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   0.00055     0.034      16      55 ..     166     205 ..     149     214 .. 0.75
   2 !   26.2   0.0   1.9e-08   1.2e-06     116     204 ..     307     392 ..     287     400 .. 0.81
   3 !   21.9   0.0   3.7e-07   2.3e-05      14      56 ..     505     547 ..     489     558 .. 0.83
   4 !   27.1   0.0   9.8e-09     6e-07     124     209 ..     603     684 ..     584     688 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00055
   TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGei 55 
                 e ++ +++G+r  ++G  G Gkstll+ +     p+  +i
  MMETSP1061-20121228|8945_1 166 ETSVVLNHGNRYGLIGRNGCGKSTLLKALGARALPIPNSI 205
                 4566779*******************98887777776666 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 1.9e-08
   TIGR01277 116 vGiadyl.erlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvved 204
                 +G ++ +  +  +++sGG r rv+lar l  +   llldep   ld     e +  +++  ++ ++ lllv+hs + + ++ s+++  ++
  MMETSP1061-20121228|8945_1 307 LGFTHEMqSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLD----MEAVIWLENYLSKWNRILLLVSHSQDFLNNVCSHMIHFTN 392
                 555544414567899**************9999999*****99888....5778888999999***********9999988888776655 PP

  == domain 3    score: 21.9 bits;  conditional E-value: 3.7e-07
   TIGR01277  14 plefdlsveaGervailGesGaGkstllnliaGflepasGeik 56 
                 + + ++ v+   rva++G+ GaGk+tl++l+aG l+ + G+i+
  MMETSP1061-20121228|8945_1 505 YTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIR 547
                 556778899999*********************9999999886 PP

  == domain 4    score: 27.1 bits;  conditional E-value: 9.8e-09
   TIGR01277 124 rlpeelsGGqrqrvalarclvrekp.illldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                 r  +els Gq+ rv la+   re p illldep   ld     e +  ++k ++e +  l+lv+h++  + ++a+++ + +d  i++
  MMETSP1061-20121228|8945_1 603 RKMGELSDGQKSRVVLAKL-GREVPhILLLDEPTNHLDM----ESIDALAKAVNEYEGGLVLVSHDMRLISQVANEIWICDDRTITK 684
                 66789************95.5666559******999885....6777789999********************99999998887765 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0      0.17        11     497     526 ..     164     193 ..     157     201 .. 0.84
   2 !   31.0   0.0   2.9e-10   1.8e-08     589     703 ..     293     409 ..     263     414 .. 0.74
   3 !   27.9   0.1   2.4e-09   1.5e-07     479     529 ..     489     537 ..     475     550 .. 0.87
   4 !   24.5   0.0   2.6e-08   1.6e-06     617     689 ..     607     679 ..     600     700 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.17
   TIGR00958 497 lkdLtftlepGevvalVGPsGsGKStvaal 526
                 l + +  l+ G+   l+G +G GKSt    
  MMETSP1061-20121228|8945_1 164 LDETSVVLNHGNRYGLIGRNGCGKSTLLKA 193
                 556677899999**************8765 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 2.9e-10
   TIGR00958 589 aaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek..adkilvlkkgsvv.elGthkqLmek 703
                 a++ +  a + +s+l  + + +  +k +  sgG + r+ +ARAL  +P+ L+LDe t  LD e    l++  s+ +r +ll+ h     ++  ++ i + ++ s+v   G+++q +++
  MMETSP1061-20121228|8945_1 293 ASTAEVRARSILSGLGFTHEMQ-SKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWNRILLLVSHSQDFLNNvcSHMIHFTNQKSLVyYDGNYDQFVKT 409
                 5555555555555554333333.3566789******************************************************9999988434667777777655156888887765 PP

  == domain 3    score: 27.9 bits;  conditional E-value: 2.4e-09
   TIGR00958 479 veFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallen 529
                 + F+dVsF YP    +p+  + +f +   + valVGP+G GK t + l+  
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPG--CQPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAG 537
                 68*********6..699*****************************99875 PP

  == domain 4    score: 24.5 bits;  conditional E-value: 2.6e-08
   TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvekadkilvlkkg 689
                  ls Gqk r+ +A+     P +L+LDe t  LD e+  +l +  ++++  ++l+ h + ++ ++ + + +  +
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEGGLVLVSHDMRLISQVANEIWICDD 679
                 589***********88889******************************************986655555444 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00032     0.019       5      50 ..     149     194 ..     145     214 .. 0.87
   2 !   31.0   0.0   5.4e-10   3.3e-08     109     182 ..     294     368 ..     284     388 .. 0.81
   3 !   17.6   0.0   6.4e-06   0.00039      21      64 ..     506     549 ..     491     554 .. 0.90
   4 !   20.5   0.0   8.2e-07     5e-05     133     208 ..     606     677 ..     585     689 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00032
   TIGR03265   5 lsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLrii 50 
                 +++++++ +      l++ s+ +++g+   l+G  GCGk+tLL+++
  MMETSP1061-20121228|8945_1 149 VNVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 6778888777788899***************************987 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 5.4e-10
   TIGR03265 109 eevaerveelLelvgls.gseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqr 182
                 + ++ r +++L+ +g++ + ++k    +sGG + rv+Laral ++P  LLLDeP   LD      L + l k  r
  MMETSP1061-20121228|8945_1 294 STAEVRARSILSGLGFThEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWNR 368
                 56677888999999987246789999*********************************8877777666666555 PP

  == domain 3    score: 17.6 bits;  conditional E-value: 6.4e-06
   TIGR03265  21 kdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillg 64 
                 +++++ v  +  v+l+GP G GkttL++++aG  +++ G i  +
  MMETSP1061-20121228|8945_1 506 TNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPH 549
                 68999999999*********************999999998755 PP

  == domain 4    score: 20.5 bits;  conditional E-value: 8.2e-07
   TIGR03265 133 gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvm 208
                 g ls Gq+ rv La+     P++LLLDeP   LD    + L + +++    l    ++v hd     ++a+ i + 
  MMETSP1061-20121228|8945_1 606 GELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEGGL----VLVSHDMRLISQVANEIWIC 677
                 78********************************999999988877765544....56666665555555555555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   0.00011    0.0066       4      54 ..     150     200 ..     148     220 .. 0.84
   2 !   10.5   0.0    0.0013     0.077     115     228 ..     291     405 ..     271     415 .. 0.73
   3 !   26.5   0.0   1.6e-08   9.6e-07       3      70 ..     489     558 ..     487     565 .. 0.85
   4 !   27.8   0.0   6.2e-09   3.8e-07     138     217 ..     602     679 ..     573     698 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 0.00011
   TIGR03411   4 evedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktrp 54 
                 +v++v+ +  g   l++ s+ +++g+   +iG nG Gk+tll ++  ++ p
  MMETSP1061-20121228|8945_1 150 NVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGARALP 200
                 68899999999999****************************998877654 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.0013
   TIGR03411 115 rlskeekerieevleligLeekad.kkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGk..vlaeGslde 228
                   +++++ r +++l+ +g +++++ kk+   s G + ++ ++  l  +p  lllDeP+  +  e      + l++   +r +++v h  +f++++ +++  +++ k  v  +G+ d+
  MMETSP1061-20121228|8945_1 291 LDASTAEVRARSILSGLGFTHEMQsKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKW--NRILLLVSHSQDFLNNVCSHMIHFTNQKslVYYDGNYDQ 405
                 445556667777888888776654167889****************************999877776666666654..678899********9998776555443311445666665 PP

  == domain 3    score: 26.5 bits;  conditional E-value: 1.6e-08
   TIGR03411   3 Levedvsvsfdgfkal.ndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltklk 70 
                 L  +dvs  + g + l +++++ v+ ++  +++GpnGaGkttl+ +++G  +++ G++  +g+ +l + +
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQPLyTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGHlKLGRFT 558
                 67778888888888774689********99****************************988886776655 PP

  == domain 4    score: 27.8 bits;  conditional E-value: 6.2e-09
   TIGR03411 138 dkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlhe 217
                  +k g+Ls Gqk ++ ++ l  + p++lllDeP+  +  e  +  a+ ++e ++   +v+v hDm  + ++a+++ +  +
  MMETSP1061-20121228|8945_1 602 VRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEG--GLVLVSHDMRLISQVANEIWICDD 679
                 46789******************************9998888888888887654..6899************99977655 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.5e-05    0.0028       3      47 ..     151     195 ..     149     212 .. 0.88
   2 !   27.8   0.0   5.5e-09   3.3e-07      98     224 ..     277     397 ..     269     414 .. 0.83
   3 !   16.9   0.0   1.1e-05    0.0007      15      52 ..     504     541 ..     499     554 .. 0.83
   4 !   19.3   0.0   2.1e-06   0.00013     139     223 ..     603     682 ..     582     698 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.5e-05
   TIGR01978   3 ikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvla 47 
                 +++++++     +L++ ++ +++G+ + ++G+nG GkstL k+l 
  MMETSP1061-20121228|8945_1 151 VTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALG 195
                 667777777788999**************************9985 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 5.5e-09
   TIGR01978  98 lrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGriv 224
                 + +alnav   +  ++ld++  e   ++ l+ l +++e+++++  + fsGG + r  + + ++++P   +LDe    lD++a+  + + ++k+   ++ ll+++h + +l+++   ++h   +  +v
  MMETSP1061-20121228|8945_1 277 IMDALNAVY--ERLDALDASTAEVRARSILSGLGFTHEMQSKKT-KDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKW---NRILLLVSHSQDFLNNVCSHMIHFTNQKSLV 397
                 556777777..455567888888888888899999999998886.67***********************************99998888877...5789**************9999987765554 PP

  == domain 3    score: 16.9 bits;  conditional E-value: 1.1e-05
   TIGR01978  15 iLkglnlevkkGevhaimGpnGsGkstLskvlagheky 52 
                 + +++n  v+    +a++GpnG+Gk tL+k +ag+ + 
  MMETSP1061-20121228|8945_1 504 LYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNA 541
                 56789999999999********************8654 PP

  == domain 4    score: 19.3 bits;  conditional E-value: 2.1e-06
   TIGR01978 139 RslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGri 223
                 R++ e  s G k r  + +l    P++ +LDe    lD++++ ++a+ vn+++    +l++++h  rl+++++   + +  d +i
  MMETSP1061-20121228|8945_1 603 RKMGE-LSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYE---GGLVLVSHDMRLISQVAN-EIWICDDRTI 682
                 55544.7999***************************************9985...79***********99974.4555555555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0055      0.34     353     386 ..     161     194 ..     136     205 .. 0.87
   2 !   21.6   0.0   2.6e-07   1.6e-05     465     512 ..     308     356 ..     277     383 .. 0.77
   3 !   28.3   0.0   2.3e-09   1.4e-07     338     398 ..     489     547 ..     475     554 .. 0.87
   4 !   19.0   0.0   1.6e-06   9.5e-05     476     538 ..     607     667 ..     599     688 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0055
   TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllell 386
                    ld+ +++++ G++  l+G  G Gkstll+ l
  MMETSP1061-20121228|8945_1 161 AVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 4578999***********************9866 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 2.6e-07
   TIGR02204 465 Gydtll.GergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaese 512
                 G+  ++   ++  +sGG + r+++ara++ +   LLLde t+ Ld e+ 
  MMETSP1061-20121228|8945_1 308 GFTHEMqSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAV 356
                 5544441467889********************************9875 PP

  == domain 3    score: 28.3 bits;  conditional E-value: 2.3e-09
   TIGR02204 338 iefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGail 398
                 ++f++v+f yP  +  +   ++++ v+   +valvGP GaGk+tl++l+    + + G i+
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQ--PLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIR 547
                 68*********976..7889****************************9877777777665 PP

  == domain 4    score: 19.0 bits;  conditional E-value: 1.6e-06
   TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatv 538
                 +Ls Gqk r+ +a+   +   iLLLde t+ Ld es +++ +a++e   g   ++++h +  +
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEGG--LVLVSHDMRLI 667
                 69***********98777788**********************9986544..34455555444 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0     1e-05   0.00063     452     499 ..     149     194 ..     139     208 .. 0.89
   2 !   22.0   0.0   1.8e-07   1.1e-05     579     672 ..     311     407 ..     307     412 .. 0.75
   3 !   17.4   0.0   4.4e-06   0.00027     442     501 ..     478     537 ..     437     551 .. 0.84
   4 !   20.0   0.0   6.8e-07   4.2e-05     587     661 ..     606     681 ..     601     692 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1e-05
   TIGR03797 452 ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlL 499
                 ++v +vt +    g++ Ld+ s+  + G+  +++G  G+GKStll+ L
  MMETSP1061-20121228|8945_1 149 VNVTNVTLQH--MGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 6777777765..8999*****************************976 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 1.8e-07
   TIGR03797 579 hTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirn.a.drilvleeGr.vveqGsyeeLl 672
                 h + s+ ++  SGG r R+ +Aral  +P  ll+DE T  LD ++     + l+k +   +++ H    ++n + ++i   ++   v   G+y++ +
  MMETSP1061-20121228|8945_1 311 HEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWNRILLLVSHSQDFLNNvCsHMIHFTNQKSlVYYDGNYDQFV 407
                 6667888899********************************9999888888988888888888876666553213443333333144566666666 PP

  == domain 3    score: 17.4 bits;  conditional E-value: 4.4e-06
   TIGR03797 442 kvdpgkLsGa.ievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLg 501
                  +dpg+L    ++ + v+F Y +  +    +v++ ++    va+vG+ G+GK tl++l+ g
  MMETSP1061-20121228|8945_1 478 FSDPGHLPPPvLAFHDVSFGY-PGCQPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAG 537
                 4678888765157899*****.8889999*****************************987 PP

  == domain 4    score: 20.0 bits;  conditional E-value: 6.8e-07
   TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTirn.adrilvleeGr 661
                 g lS GQ+ R+++A+   + P+ill+DE T  LD ++  +  +++++ +   +++ H +  i + a+ i + ++  
  MMETSP1061-20121228|8945_1 606 GELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEGGLVLVSHDMRLISQvANEIWICDDRT 681
                 679******************************************************9888865367777776655 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0     0.003      0.18     470     520 ..     145     194 ..     134     197 .. 0.87
   2 !   25.4   0.0   1.7e-08     1e-06     597     698 ..     305     409 ..     276     413 .. 0.75
   3 !   28.2   0.0   2.3e-09   1.4e-07     474     534 ..     489     549 ..     482     574 .. 0.89
   4 !   12.6   0.0   0.00012    0.0076     609     683 ..     605     679 ..     595     691 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.003
   TIGR01193 470 lngdievndvsysyGygsevledislkikknekitlvGlsGsGkstlakll 520
                    d++v +v+ ++ +g+ +l++ s+ +++ ++  l+G  G Gkstl k l
  MMETSP1061-20121228|8945_1 145 RARDVNVTNVTLQH-MGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 56788999999886.79999***************************9976 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 1.7e-08
   TIGR01193 597 lplGyqtel.seeassisgGqkqrlalarallsdskvlildestsnldlltekki.venllklkdktiifvahrlsvakk.sdkiivldeGk..iieqGshkellke 698
                   lG+  e+ s+++   sgG + r++laral+ +  +l+lde t +ld+  e  i +en l+  ++ +++v+h  +  ++   ++i + + k  +  +G++++++k+
  MMETSP1061-20121228|8945_1 305 SGLGFTHEMqSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDM--EAVIwLENYLSKWNRILLLVSHSQDFLNNvCSHMIHFTNQKslVYYDGNYDQFVKT 409
                 5678888873566789********************************8..44443799999999999999998876544145555444333225567888877765 PP

  == domain 3    score: 28.2 bits;  conditional E-value: 2.3e-09
   TIGR01193 474 ievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeilln 534
                 + ++dvs+ y  ++++  ++++ ++ +++++lvG  G+Gk+tl+kl+ +  +a+ G+i   
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPH 549
                 5789**************************************************9999754 PP

  == domain 4    score: 12.6 bits;  conditional E-value: 0.00012
   TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsvakks.dkiivlde 683
                   ++s Gqk r+ la+      ++l+lde t +ld+      + + ++  +  +++v+h + + +++ ++i + d+
  MMETSP1061-20121228|8945_1 605 MGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDA-LAKAVNEYEGGLVLVSHDMRLISQVaNEIWICDD 679
                 5689************999999*************976554.5666777799999****99865555145555554 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00011    0.0065     456     503 ..     149     194 ..     134     216 .. 0.79
   2 !   29.2   0.0     1e-09   6.4e-08     582     683 ..     308     411 ..     298     421 .. 0.79
   3 !    9.2   0.0    0.0012     0.071     456     504 ..     489     536 ..     483     546 .. 0.88
   4 !   22.7   0.0   9.5e-08   5.8e-06     590     669 ..     604     682 ..     598     692 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00011
   TIGR01846 456 iefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkll 503
                 +++ n++++  +  +++l++ s+ +++G+  G++G+ G+Gkstl k l
  MMETSP1061-20121228|8945_1 149 VNVTNVTLQ--HMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 555555554..3457899**************************9977 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 1e-09
   TIGR01846 582 Gyetevge.kGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adril..vlekGkivesGkheellakeg 683
                 G+  e++  k   +sGG r r++laral  +P  l+lde t  ld+e+   + + l++   +r ++ ++h  + + + + +++  + +k  +  +G++++++++++
  MMETSP1061-20121228|8945_1 308 GFTHEMQSkKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSK--WNRILLLVSHSQDFLNNvCSHMIhfTNQKSLVYYDGNYDQFVKTKS 411
                 66666654156789********************************998888888877..5899999999877776535555411445667888999999998876 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.0012
   TIGR01846 456 iefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllq 504
                 + f+++ f y   + ++ +n+++ +     + +vGp G+Gk+tl kl+ 
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQ-PLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMA 536
                 57999999996555.5789****************************95 PP

  == domain 4    score: 22.7 bits;  conditional E-value: 9.5e-08
   TIGR01846 590 kGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvra.adrilvlekGki 669
                 k ++ls Gq+ r+ la+     P+il+lde t  ld+es +++ + ++e   g  +  ++h +  + + a++i + ++  i
  MMETSP1061-20121228|8945_1 604 KMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEGGLVL--VSHDMRLISQvANEIWICDDRTI 682
                 5679********************************************98877555..55555555442566777766655 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.4e-05    0.0021     330     379 ..     147     194 ..     118     207 .. 0.77
   2 !   19.9   0.0   7.4e-07   4.5e-05     466     507 ..     316     357 ..     288     380 .. 0.81
   3 !   23.8   0.0   4.9e-08     3e-06     332     390 ..     489     546 ..     487     555 .. 0.90
   4 !   15.9   0.0   1.3e-05   0.00078     468     544 ..     605     680 ..     598     687 .. 0.77
   5 ?   -2.3   0.2       3.9   2.4e+02     360     372 ..     783     795 ..     780     797 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.4e-05
   TIGR02203 330 GkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnll 379
                  +v++ nvt ++   ++  ld+ s++++ G++  l+Gr G Gkstl++ l
  MMETSP1061-20121228|8945_1 147 RDVNVTNVTLQHM--GAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 2678888887765..5678***************************9865 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 7.4e-07
   TIGR02203 466 engskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseR 507
                 +++   sGG R R+++aRal+ +   L+LDe t  LD e+  
  MMETSP1061-20121228|8945_1 316 KKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVI 357
                 466789*****************99************99755 PP

  == domain 3    score: 23.8 bits;  conditional E-value: 4.9e-08
   TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGei 390
                 + f++v+f ypg + +   ++++ v+   +valvG+ G+Gk+tlv+l++  ++ + G+i
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQ-PLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDI 546
                 67999******975.7899*****************************98888888887 PP

  == domain 4    score: 15.9 bits;  conditional E-value: 1.3e-05
   TIGR02203 468 gskLsGGqRqRlaiaRallkdaP.iLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek.aDrivvlddG 544
                  ++Ls Gq+ R+ +a+ l ++ P iL+LDe t  LD es  ++ +a+++   g   ++++h +  i + a++i + dd 
  MMETSP1061-20121228|8945_1 605 MGELSDGQKSRVVLAK-LGREVPhILLLDEPTNHLDMESIDALAKAVNEYEGG--LVLVSHDMRLISQvANEIWICDDR 680
                 568************8.66777769**************99888888875433..345678777775437777777765 PP

  == domain 5    score: -2.3 bits;  conditional E-value: 3.9
   TIGR02203 360 evvalvGrsGsGk 372
                  +va vG sGsG 
  MMETSP1061-20121228|8945_1 783 STVATVGTSGSGS 795
                 68**********6 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.7e-05    0.0028      22      60 ..     162     200 ..     145     218 .. 0.80
   2 !   31.7   0.0   3.6e-10   2.2e-08     120     218 ..     291     386 ..     278     392 .. 0.76
   3 !   11.1   0.0    0.0007     0.043      23      64 ..     504     545 ..     500     574 .. 0.84
   4 !   14.1   0.0   8.4e-05    0.0051     126     208 ..     584     663 ..     562     676 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.7e-05
   TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlp 60 
                   l+e s+ ++ G+   l+G+ G Gkstllk+l a  lp
  MMETSP1061-20121228|8945_1 162 VLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGARALP 200
                 4578889999**********************9877665 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 3.6e-10
   TIGR02324 120 vereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadr 218
                 ++  +a+++a+++l+ l  +  + s     fsGG + Rv +aral  +   LLLdePt  Ld     +v+ l + + +    l+ + h ++  + v+ +
  MMETSP1061-20121228|8945_1 291 LDASTAEVRARSILSGLGFTHEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDME---AVIWLENYLSKWNRILLLVSHSQDFLNNVCSH 386
                 5677899***************************************9555699********754...45555555555555566666666665555555 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 0.0007
   TIGR02324  23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgr 64 
                   ++v++ v+    val G+ GaGk tl+k + ++  +  g 
  MMETSP1061-20121228|8945_1 504 LYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGD 545
                 568999************************987766665555 PP

  == domain 4    score: 14.1 bits;  conditional E-value: 8.4e-05
   TIGR02324 126 rakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208
                 r++ +++l r+ ++  + +      s G k Rv +a+       iLLLdePt  Ld   +++  + ++e       l+ + hd
  MMETSP1061-20121228|8945_1 584 REEQRKYLGRFGVSGPMQVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEY---EGGLVLVSHD 663
                 5566777777777777777777789***********9766645599**********99998777766664...3344555555 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00042     0.026       2      37 ..     165     200 ..     164     215 .. 0.81
   2 !   28.4   0.0     4e-09   2.4e-07     102     147 ..     307     353 ..     270     382 .. 0.73
   3 !    8.5   0.0    0.0047      0.29       3      46 ..     507     550 ..     505     554 .. 0.87
   4 !   19.8   0.0   1.6e-06    0.0001     110     204 ..     603     694 ..     591     705 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00042
   TIGR01184   2 kdvdleikkgefislighsgcgkstllnliaglekp 37 
                 ++ ++ +++g+   lig  gcgkstll  +   + p
  MMETSP1061-20121228|8945_1 165 DETSVVLNHGNRYGLIGRNGCGKSTLLKALGARALP 200
                 5667778999999**************988766665 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 4e-09
   TIGR01184 102 vgl.reaadkrpeqlsggmkqrvaiaralsirpklllldepfgalda 147
                 +g+ +e + k+++++sgg + rv++aral i+p  llldep   ld 
  MMETSP1061-20121228|8945_1 307 LGFtHEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDM 353
                 3331457889********************************99995 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0047
   TIGR01184   3 dvdleikkgefislighsgcgkstllnliaglekptsgavileg 46 
                 +v++ +     ++l+g  g gk+tl+ l+ag  + t g ++ +g
  MMETSP1061-20121228|8945_1 507 NVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHG 550
                 677778888889*******************9999999887665 PP

  == domain 4    score: 19.8 bits;  conditional E-value: 1.6e-06
   TIGR01184 110 krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngp.aakigeilevpl 204
                 +++++ls g k rv +a+     p++llldep   ld     e  + l k v+e +   ++v+hd+     +++ + +  +   + + g+i++ ++
  MMETSP1061-20121228|8945_1 603 RKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDM----ESIDALAKAVNEYEGGLVLVSHDMRLISQVANEIWICDDRTiTKYQGDIMNFKM 694
                 6889***************99***************96....4457889999*************9877777777766655441334566666655 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     4e-06   0.00024       5      67 ..     149     213 ..     146     239 .. 0.77
   2 !   24.9   0.0   3.2e-08   1.9e-06     100     205 ..     284     387 ..     270     406 .. 0.72
   3 !   11.3   0.0   0.00045     0.027      21      62 ..     506     547 ..     490     564 .. 0.84
   4 !   12.1   0.0   0.00024     0.015     133     169 ..     605     641 ..     597     685 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4e-06
   TIGR01288   5 idlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlg..lispdegkitvlgep 67 
                 +++++v+  + + v++++ s  + +g+ +gl+g ng+gkst+ + +    l  p+   i  l+e+
  MMETSP1061-20121228|8945_1 149 VNVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGAraLPIPNSIDIFFLKEE 213
                 67899999999*******************************99875411334555555556554 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 3.2e-08
   TIGR01288 100 vfgryfglstreieevipsllefarlesk.advrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargkti.lltthlmeeaerlcdrl 205
                 v+ r   l++ + e    s+l    +       +  d+sgg + r++laral  +p  l+ldept  ld  a  +iw  l   l++ + i ll +h  +  + +c  +
  MMETSP1061-20121228|8945_1 284 VYERLDALDASTAEVRARSILSGLGFTHEmQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEA--VIW--LENYLSKWNRIlLLVSHSQDFLNNVCSHM 387
                 5666666666666655555544333322203346789********************************987..788..55666665544156778777777777765 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00045
   TIGR01288  21 ndlsftiaagecfgllgpngagkstiarlvlglispdegkit 62 
                  ++ f +       l+gpngagk+t+ +l+ g  +   g i 
  MMETSP1061-20121228|8945_1 506 TNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIR 547
                 56778888888899*****************99988888775 PP

  == domain 4    score: 12.1 bits;  conditional E-value: 0.00024
   TIGR01288 133 vadlsggmkrrltlaralindpqllildepttgldph 169
                 + +ls g k r+ la+   + p++l+ldept  ld  
  MMETSP1061-20121228|8945_1 605 MGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDME 641
                 679******************************9975 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.068       4.2       1      17 [.     179     195 ..     179     216 .. 0.82
   2 !   32.2   0.0     2e-10   1.2e-08      68     133 ..     287     353 ..     279     377 .. 0.88
   3 !    9.4   0.0    0.0017      0.11       1      27 [.     520     546 ..     520     551 .. 0.87
   4 !   22.6   0.3   1.7e-07     1e-05      94     174 ..     601     677 ..     596     758 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.068
   TIGR01187   1 lLGpsGsGkttlLrlla 17 
                 l+G  G+Gk+tlL+ l 
  MMETSP1061-20121228|8945_1 179 LIGRNGCGKSTLLKALG 195
                 6899*********9885 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 2e-10
   TIGR01187  68 kmrkvpkaeikervkeaLelvql.eefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDk 133
                 +++ +++++ + r + +L+   + +e+ ++k +++sGG r rv+lara+  +P  LLlDep   LD 
  MMETSP1061-20121228|8945_1 287 RLDALDASTAEVRARSILSGLGFtHEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDM 353
                 67788899999999999987766258999999*******************************9997 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0017
   TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGki 27 
                 l+Gp G+Gkttl++l+aG  +   G i
  MMETSP1061-20121228|8945_1 520 LVGPNGAGKTTLVKLMAGELNATLGDI 546
                 78****************877777766 PP

  == domain 4    score: 22.6 bits;  conditional E-value: 1.7e-07
   TIGR01187  94 akrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavl 174
                   rk+ +ls Gq+ rv la+   + P+iLLlDep   LD +  d + + +++ +      +vlv hD +    +++ i + 
  MMETSP1061-20121228|8945_1 601 QVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEG----GLVLVSHDMRLISQVANEIWIC 677
                 569999*********************************9888877766655443....4588888877666666666665 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.019       1.1       3      31 ..     165     193 ..     163     203 .. 0.86
   2 !   20.2   0.0   1.1e-06   6.5e-05     111     191 ..     306     382 ..     267     414 .. 0.77
   3 ?    5.9   0.0     0.026       1.6       3      37 ..     506     540 ..     504     557 .. 0.77
   4 !   32.1   0.0   2.4e-10   1.5e-08     125     205 ..     607     683 ..     576     698 .. 0.88
   5 ?   -1.9   0.0       6.2   3.8e+02      14      26 ..     784     796 ..     781     802 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.019
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltala 31 
                 ++ ++ l++g+  +l+G  G+Gks+  +a
  MMETSP1061-20121228|8945_1 165 DETSVVLNHGNRYGLIGRNGCGKSTLLKA 193
                 677889999***************87766 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 1.1e-06
   TIGR02770 111 gLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvae 191
                 gL  ++e+ +k   ++sGG   Rv +a al +++  l+ DePt  lD+ + +     le+  +k +  +ll++h    + +
  MMETSP1061-20121228|8945_1 306 GLGFTHEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIW----LENYLSKWNRILLLVSHSQDFLNN 382
                 5555677777888899*******************************987665....445555666778888887666655 PP

  == domain 3    score: 5.9 bits;  conditional E-value: 0.026
   TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglld 37 
                 ++vn+ +  +  +alvG  G+Gk++  + + g l+
  MMETSP1061-20121228|8945_1 506 TNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELN 540
                 689********************987766655554 PP

  == domain 4    score: 32.1 bits;  conditional E-value: 2.4e-10
   TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkiv 205
                 els G   Rv++a      + +l+ DePt  lD+ +    ++ l + +++ + g++l++hD++ ++++a+e+ + ++  i 
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMES----IDALAKAVNEYEGGLVLVSHDMRLISQVANEIWICDDRTIT 683
                 789999999999998899999************865....7899999999***********************99887665 PP

  == domain 5    score: -1.9 bits;  conditional E-value: 6.2
   TIGR02770  14 vlalvGesGsGks 26 
                  +a vG sGsG +
  MMETSP1061-20121228|8945_1 784 TVATVGTSGSGSA 796
                 6899*******76 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00069     0.042      20      51 ..     163     194 ..     149     208 .. 0.84
   2 !   30.3   0.0   7.6e-10   4.6e-08     115     234 ..     294     411 ..     280     433 .. 0.81
   3 ?    0.3   0.0      0.95        58      23      50 ..     507     534 ..     503     546 .. 0.83
   4 !   22.3   0.0     2e-07   1.2e-05     140     218 ..     607     681 ..     590     700 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00069
   TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircv 51 
                  ld+ s+ + +g+ +g+ig  g gkstl++ +
  MMETSP1061-20121228|8945_1 163 LLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 48999***********************9875 PP

  == domain 2    score: 30.3 bits;  conditional E-value: 7.6e-10
   TIGR02314 115 ekikrkvtellalvglsdkkdsy.psnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdeva.vidkgeliekgtvseifshpkt 234
                    + +   +l+ +g+++  +s    ++sgg + rv++aral  +p  ll de t  ld  +   + + l + nr     +ll++h  d + ++c ++    ++  l+  +   + f + k+
  MMETSP1061-20121228|8945_1 294 STAEVRARSILSGLGFTHEMQSKkTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLSKWNRI----LLLVSHSQDFLNNVCSHMIhFTNQKSLVYYDGNYDQFVKTKS 411
                 4556677789999999988777615689*******************************99998888888888886....599************886514555667777777777766665 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.95
   TIGR02314  23 nvslfvpkgqifgvigasgagkstlirc 50 
                 nv++ v     + ++g  gagk+tl++ 
  MMETSP1061-20121228|8945_1 507 NVNFGVDLDSRVALVGPNGAGKTTLVKL 534
                 67777777778899***********986 PP

  == domain 4    score: 22.3 bits;  conditional E-value: 2e-07
   TIGR02314 140 nlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkge 218
                 +ls gqk rv +a+     p++ll de t  ld    +si  l k +n   g  ++l++h+m ++ ++ +e+ + d+  
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDM---ESIDALAKAVNEYEG-GLVLVSHDMRLISQVANEIWICDDRT 681
                 79************999***************95...799999999998665.77899************999988755 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-05   0.00086       9      54 ..     149     194 ..     143     200 .. 0.90
   2 !   24.6   0.0   4.1e-08   2.5e-06     132     172 ..     314     354 ..     287     378 .. 0.84
   3 !   10.7   0.0   0.00066      0.04      35      65 ..     516     546 ..     494     551 .. 0.83
   4 !   12.5   0.0   0.00019     0.012     137     212 ..     606     676 ..     595     690 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.4e-05
   TIGR03258   9 vvleslrvaygarvvlddlsleieaGellallGksGsGkttllrav 54 
                 v + ++++++ + v+ld+ s+ ++ G+   l+G+ G+Gk+tll+a+
  MMETSP1061-20121228|8945_1 149 VNVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 66778888999********************************987 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 4.1e-08
   TIGR03258 132 aarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaq 172
                  ++  + +sGG + rv+laral ++p  llldep   ld +
  MMETSP1061-20121228|8945_1 314 QSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDME 354
                 45667889*****************************9976 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00066
   TIGR03258  35 ellallGksGsGkttllravaGfvkadGGrl 65 
                   +al+G+ G+Gkttl++++aG ++a  G +
  MMETSP1061-20121228|8945_1 516 SRVALVGPNGAGKTTLVKLMAGELNATLGDI 546
                 5689******************998877765 PP

  == domain 4    score: 12.5 bits;  conditional E-value: 0.00019
   TIGR03258 137 aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkill 212
                  +ls Gq+ rv la+     p++llldep   ld +   ++ + ++       e  ++ v+hd      +a+ i +
  MMETSP1061-20121228|8945_1 606 GELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEY-----EGGLVLVSHDMRLISQVANEIWI 676
                 579************99999**************86444443333322.....33456666666655555555555 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.014      0.83      10      40 ..     165     195 ..     158     219 .. 0.82
   2 !   25.8   0.0   1.9e-08   1.1e-06      97     162 ..     287     353 ..     275     383 .. 0.84
   3 !    8.2   0.0    0.0043      0.26      11      50 ..     507     546 ..     500     553 .. 0.83
   4 !   18.3   0.0   3.5e-06   0.00021     127     208 ..     605     682 ..     578     689 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.014
   TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrlln 40 
                 ++ ++ +++G+ + +iG  G+Gkstl++ l 
  MMETSP1061-20121228|8945_1 165 DETSVVLNHGNRYGLIGRNGCGKSTLLKALG 195
                 5667788999999**************9874 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1.9e-08
   TIGR01186  97 ellkideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldP 162
                 +l  +d+   + +a+  l  +++ +e + +  +++sGG + rv laral ++P  ll+de+   ld 
  MMETSP1061-20121228|8945_1 287 RLDALDASTAEVRARSILSGLGFtHEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDM 353
                 577788889999**********9999***********************************999995 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0043
   TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGki 50 
                 +v++ ++    + ++G+ G+Gk+tlv+l+   ++ t G i
  MMETSP1061-20121228|8945_1 507 NVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDI 546
                 56677777777899***************98888888877 PP

  == domain 4    score: 18.3 bits;  conditional E-value: 3.5e-06
   TIGR01186 127 PdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGei 208
                   els G++ rv la+     P +ll+de+   ld     e  d l k  ++++  +v+++hd+    ++++ i i  +  i
  MMETSP1061-20121228|8945_1 605 MGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDM----ESIDALAKAVNEYEGGLVLVSHDMRLISQVANEIWICDDRTI 682
                 579*************99999*************95....5568899999999***********999999999998877655 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00077     0.047      34      74 ..     157     197 ..     130     203 .. 0.79
   2 !   22.0   0.0   1.9e-07   1.2e-05     162     199 ..     316     353 ..     303     377 .. 0.87
   3 !    8.4   0.1    0.0025      0.15      54      74 ..     518     538 ..     513     547 .. 0.88
   4 !   14.6   0.0   3.1e-05    0.0019     164     203 ..     605     644 ..     598     653 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00077
   TIGR00955  34 kkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafr 74 
                 ++    ll + s v++ G+   ++G  G GK+TLl+al  r
  MMETSP1061-20121228|8945_1 157 QHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGAR 197
                 444567999****************************9887 PP

  == domain 2    score: 22.0 bits;  conditional E-value: 1.9e-07
   TIGR00955 162 grvkglSgGerkRlalaselltdPilLfcDEPTsGLDs 199
                  ++k  SgG r R++la  l  +P+ L++DEPT  LD 
  MMETSP1061-20121228|8945_1 316 KKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDM 353
                 56899*******************************95 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.0025
   TIGR00955  54 lAvlGsSGaGKtTLlnalafr 74 
                 +A++G+ GaGKtTL++ +a  
  MMETSP1061-20121228|8945_1 518 VALVGPNGAGKTTLVKLMAGE 538
                 79*************999865 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 3.1e-05
   TIGR00955 164 vkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaa 203
                 +  lS G++ R+ la+   + P++L++DEPT  LD  s  
  MMETSP1061-20121228|8945_1 605 MGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESID 644
                 4469*******************************77655 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.2e-05    0.0014       6      51 ..     153     198 ..     149     225 .. 0.76
   2 !   13.7   0.0   5.6e-05    0.0034     121     438 ..     300     355 ..     279     392 .. 0.60
   3 !    7.8   0.0    0.0033       0.2      19      49 ..     507     537 ..     494     552 .. 0.85
   4 !   18.1   0.0   2.6e-06   0.00016     400     478 ..     604     679 ..     582     700 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.2e-05
   TIGR02633   6 givkkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvy 51 
                 +++ +  g   ld+ ++ l+ G+  +l G nG+Gkstl+k l +  
  MMETSP1061-20121228|8945_1 153 NVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGARA 198
                 5566666667899***************************998754 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 5.6e-05
   TIGR02633 121 akellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhvatkdaealseddiitmmvGreltslypkepheigdvilevenltaydvvnrkikrvddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavlkkfakksrideaaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGa 438
                 a+++l  l    + +++  +d+                                                                                                                                                                                                                                                                      sGG + +  la+ l ++p  l+ldept  +d+ a
  MMETSP1061-20121228|8945_1 300 ARSILSGLGFTHEMQSKKTKDF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEA 355
                 4555555555555555555555......................................................................................................................................................................................................................................................................5555555555555555555555555555555544 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0033
   TIGR02633  19 nidlklraGeivslcGenGaGkstlmkvlsg 49 
                 n+++ ++    v+l G nGaGk+tl+k+++g
  MMETSP1061-20121228|8945_1 507 NVNFGVDLDSRVALVGPNGAGKTTLVKLMAG 537
                 677777778889***************9987 PP

  == domain 4    score: 18.1 bits;  conditional E-value: 2.6e-06
   TIGR02633 400 piarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvige 478
                  +++ls G++ + vlakl    p++l+ldept  +d+ +   + k +n+       +++vs ++  +  +++ + + ++
  MMETSP1061-20121228|8945_1 604 KMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYE---GGLVLVSHDMRLISQVANEIWICDD 679
                 6899********************************998877777777642...2455566665555555555555444 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0     5e-06   0.00031     453     501 ..     149     196 ..     116     250 .. 0.83
   2 !   12.4   0.0   0.00014    0.0086     583     640 ..     320     377 ..     265     394 .. 0.83
   3 !    9.9   0.0    0.0008     0.049     455     501 ..     491     537 ..     486     556 .. 0.85
   4 !   11.9   0.0   0.00019     0.012     581     643 ..     605     667 ..     601     672 .. 0.94

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 5e-06
   TIGR00954 453 ikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilge 501
                 + + n+ l    g vl++e s+ +++Gn   +iG nGcGKs l + lg 
  MMETSP1061-20121228|8945_1 149 VNVTNVTLQ-HMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGA 196
                 445555443.4799*******************************9984 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00014
   TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdkly..elakevgitllsvshrk 640
                   sgG + R+++AR ++ +P   +LDE t+   +d+E  ++  + + + +  ll vsh +
  MMETSP1061-20121228|8945_1 320 DFSGGWRMRVSLARALFIQPVCLLLDEPTNH--LDMEAVIWleNYLSKWNRILLLVSHSQ 377
                 579***************************7..578877763355677777777788865 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.0008
   TIGR00954 455 feniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilge 501
                 f ++    P  + l  +++f v   + + ++GPnG GK  l +++++
  MMETSP1061-20121228|8945_1 491 FHDVSFGYPGCQPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAG 537
                 66777777888999999*************************99864 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 0.00019
   TIGR00954 581 kdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrksLw 643
                 + +Ls G+k R+ +A+l    P+  +LDE t+ + ++  d+l +++ e++  l+ vsh   L+
  MMETSP1061-20121228|8945_1 605 MGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEGGLVLVSHDMRLI 667
                 568*******************************99999*******************88776 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.9e-06    0.0003     467     548 ..     316     397 ..     283     414 .. 0.77
   2 !   26.9   0.0   6.5e-09     4e-07     335     392 ..     489     546 ..     485     552 .. 0.91
   3 !    6.7   0.0    0.0084      0.51     471     515 ..     607     651 ..     598     688 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.9e-06
   TIGR01192 467 ergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvre..adlvlfldqgrli 548
                 ++ + +sgg r r+++ara++ +   l+lde t  ld+e+ + + + +   + nr  ++++h    + +  + ++ f +q  l+
  MMETSP1061-20121228|8945_1 316 KKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYLS--KWNRILLLVSHSQDFLNNvcSHMIHFTNQKSLV 397
                 567789*****************99***************999998765..458888888887766666223556666666555 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 6.5e-09
   TIGR01192 335 vefrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqi 392
                 + f+d+sf+++ ++    +v f +     va+vgp gagkttl+ l+    + + g i
  MMETSP1061-20121228|8945_1 489 LAFHDVSFGYPGCQPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDI 546
                 57********************************************998888887777 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.0084
   TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetearvkdaid 515
                 +ls g++ r+ +a+       il+lde t  ld+e+   + +a++
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVN 651
                 69************9888888**************8766666665 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.7e-06   0.00011    1220    1265 ..     151     194 ..     139     207 .. 0.83
   2 !   11.9   0.0   9.5e-05    0.0058     549     583 ..     321     355 ..     313     418 .. 0.74
   3 !   10.3   0.0   0.00028     0.017     439     490 ..     502     553 ..     489     562 .. 0.89
   4 !    6.8   0.0    0.0033       0.2    1354    1398 ..     608     652 ..     601     738 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.7e-06
   TIGR01271 1220 vkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                  v +  +   + g  +l++ s  ++ g+r gl+gr g+gkstll al
  MMETSP1061-20121228|8945_1  151 VTN--VTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194 
                  333..4455679999*****************************98 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 9.5e-05
   TIGR01271 549 lsggqrarislaravykdadlylldspfsyldvvt 583
                 +sgg r r+slara++ +    lld p ++ld+ +
  MMETSP1061-20121228|8945_1 321 FSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEA 355
                 79******************************743 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00028
   TIGR01271 439 tpvlknislklekgqllavagstgsgkssllmmilgelepsegkikhsgris 490
                  p+  n+++ ++    +a+ g  g+gk++l+ ++ gel+ + g i+  g + 
  MMETSP1061-20121228|8945_1 502 QPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGHLK 553
                 68899****************************************9988765 PP

  == domain 4    score: 6.8 bits;  conditional E-value: 0.0033
   TIGR01271 1354 lsnghkqlmclarsilskakillldepsafldpvtlqiirktlkq 1398
                  ls+g k  + la+      +illldep+ +ld  +++ + k++ +
  MMETSP1061-20121228|8945_1  608 LSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNE 652 
                  8999999999999999999*************9999999888765 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0078      0.48      35      70 ..     160     194 ..     147     206 .. 0.86
   2 !   22.6   0.0   1.6e-07   9.8e-06     155     224 ..     311     376 ..     288     401 .. 0.80
   3 ?   -2.5   0.0       6.8   4.2e+02      53      72 ..     518     537 ..     507     547 .. 0.78
   4 !   18.8   0.0   2.2e-06   0.00013     158     245 ..     601     684 ..     583     691 .. 0.90

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0078
   TIGR03415  35 GlvlgvadasldveeGeilvlmGlsGsGkssllrav 70 
                 G vl  +++s+ +++G+   l+G  G Gks+ll+a+
  MMETSP1061-20121228|8945_1 160 GAVL-LDETSVVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 5554.6889999**********************97 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.6e-07
   TIGR03415 155 aeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                 +e + kk++++sGG + rv lara+ ++   ll+deP   ld      l +      +k ++ +++vsh 
  MMETSP1061-20121228|8945_1 311 HEMQSKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENY----LSKWNRILLLVSHS 376
                 46789***********************************996554444443....35566666666665 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 6.8
   TIGR03415  53 lvlmGlsGsGkssllravng 72 
                 + l+G  G+Gk++l++ + g
  MMETSP1061-20121228|8945_1 518 VALVGPNGAGKTTLVKLMAG 537
                 569999********998765 PP

  == domain 4    score: 18.8 bits;  conditional E-value: 2.2e-06
   TIGR03415 158 adkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivq 245
                 + +k+gels G + rv la+       ill+deP   ld     +  d l +  ++ +  +v+vshd+    ++ n+i i ++  i +
  MMETSP1061-20121228|8945_1 601 QVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDM----ESIDALAKAVNEYEGGLVLVSHDMRLISQVANEIWICDDRTITK 684
                 5689***************98888888***********94....6679999999999*********************9999887765 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00072     0.044      24      55 ..     171     202 ..     149     225 .. 0.80
   2 !   13.0   0.0   0.00018     0.011     138     171 ..     317     351 ..     280     377 .. 0.85
   3 !   13.1   0.0   0.00017     0.011       2      59 ..     487     547 ..     486     556 .. 0.84
   4 ?   -1.1   0.0       3.9   2.4e+02     141     197 ..     607     662 ..     585     682 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00072
   TIGR02323  24 lypGevlgivGesGsGkstllkalaarllada 55 
                 l  G+  g++G  G Gkstllkal ar l+  
  MMETSP1061-20121228|8945_1 171 LNHGNRYGLIGRNGCGKSTLLKALGARALPIP 202
                 7889999*****************99987654 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 0.00018
   TIGR02323 138 kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl 171
                 k + fsGG + r+ +ar+l  +p  +++ ept  l
  MMETSP1061-20121228|8945_1 317 KTKDFSGGWRMRVSLARALFIQPVCLLLdEPTNHL 351
                 6789*******************988888**9876 PP

  == domain 3    score: 13.1 bits;  conditional E-value: 0.00017
   TIGR02323   2 pllevselsksygskkgcr..vsf.lypGevlgivGesGsGkstllkalaarlladaGevt 59 
                 p+l  +++s  y + + +   v+f +     +++vG  G+Gk+tl+k +a++l a+ G+++
  MMETSP1061-20121228|8945_1 487 PVLAFHDVSFGYPGCQPLYtnVNFgVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIR 547
                 67788888888877776543599988888899************************99986 PP

  == domain 4    score: -1.1 bits;  conditional E-value: 3.9
   TIGR02323 141 afsGGmqqrlqiarnlvtrprlvfm.eptGGl..vsvqarllllrglvrelglaviivth 197
                 ++s G + r+ +a+     p+++++ ept  l   s++a    l + v+e +   ++v+h
  MMETSP1061-20121228|8945_1 607 ELSDGQKSRVVLAKLGREVPHILLLdEPTNHLdmESIDA----LAKAVNEYEGGLVLVSH 662
                 678999999999999999999999889999885344444....34455555555566655 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.1     0.015      0.93    1300    1331 ..     162     193 ..     142     199 .. 0.79
   2 !   16.2   0.0   4.8e-06   0.00029     756     879 ..     316     427 ..     271     464 .. 0.76
   3 !    7.8   0.0    0.0016     0.098     653     836 ..     504     678 ..     488     735 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.015
   TIGR00957 1300 lvlrdlnvtieggekvgivgrtgagkssltlg 1331
                  ++l + +v ++ g++ g++gr g+gks+l  +
  MMETSP1061-20121228|8945_1  162 VLLDETSVVLNHGNRYGLIGRNGCGKSTLLKA 193 
                  45778889999999999999999999988654 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 4.8e-06
   TIGR00957 756 ekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktri..lvthgisylpqvdviivlsdgkisemgsyqelldrdgafaeflrtyasaedeldaeddgvasv 879
                 +k  ++sgg + rvslara++ +    lld+p   +d       +e vi  +  l +  ri  lv+h+  +l +v   +         + + ++l+  dg + +f++t +++e+++  + ++    
  MMETSP1061-20121228|8945_1 316 KKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLD-------MEAVIWLENYLSKWNRIllLVSHSQDFLNNVCSHM-------IHFTNQKSLVYYDGNYDQFVKTKSEKEENQWKQYKWEQDS 427
                 567789**************************99888.......57788888888877776226899999999875433.......3455566777888888888888888887776666665444 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.0016
   TIGR00957 653 tlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvayvp.qqawiqndslren.ilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivlsd 836
                    ++++ +   + va+vg+ g gk++l+  + +e++   g +  +g +      q +++   l +  + f ++l +   ++  e    l  + +    +  ++g    +ls gqk rv la+       i lld+p   +d      + + v   +g l     +lv+h +  + qv   i ++d
  MMETSP1061-20121228|8945_1 504 LYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGHLKLGRfTQHFVDVLDLDKTpLEFFETLYPADPRE--EQRKYLGRFGVSGPMQVRKMG----ELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVNEYEGGL-----VLVSHDMRLISQVANEIWICD 678
                 5566777777778888888888888888888888888888888877777654325666666666544144666666666555..344556666655444444455....488999999999998888889999999988888887777777777666654.....777777777777766555554 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.12       7.2    1955    1986 ..     164     195 ..     148     200 .. 0.85
   2 !   15.4   0.0   5.4e-06   0.00033    2035    2140 ..     284     387 ..     276     397 .. 0.84
   3 !   10.3   0.0   0.00018     0.011    1941    2131 ..     492     665 ..     482     696 .. 0.65

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.12
   TIGR01257 1955 vdrlcvgvrpgecfgllgvngagktttfkmlt 1986
                  +d   v +  g+ +gl+g ng+gk+t +k l 
  MMETSP1061-20121228|8945_1  164 LDETSVVLNHGNRYGLIGRNGCGKSTLLKALG 195 
                  6788899999*****************99885 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 5.4e-06
   TIGR01257 2035 lyarlrgvpaeeiekvanwsikslglslyad.rlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrl 2140
                  +y rl  + a   e  a   +  lg++   + + +  +sgg + ++s a al   p  +lldept  +d +a   l n +    + +r ++l shs +  + +c+++
  MMETSP1061-20121228|8945_1  284 VYERLDALDASTAEVRARSILSGLGFTHEMQsKKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTNHLDMEAVIWLENYL---SKWNRILLLVSHSQDFLNNVCSHM 387 
                  6888888888888877777778899987654156788**********************************988888865...477999********9999999876 PP

  == domain 3    score: 10.3 bits;  conditional E-value: 0.00018
   TIGR01257 1941 neltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgdatvagksiltnisdvhqnmgycpqfdaiddlltgrehlylyarlr.gvpaeeiekvanwsikslglsl.yadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsme 2131
                  ++++  y+g+  p    +  gv     + l+g ngagktt +k+++g+   t gd    g+  l   ++             +d l   +  l ++  l    p ee  k     +  +g+s     r  g  s g+k ++  a     +p ++lldept  +d ++   l +++      +  +vl sh m 
  MMETSP1061-20121228|8945_1  492 HDVSFGYPGC-QPLYTNVNFGVDLDSRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGHLKLGRFTQH-----------FVDVLDLDKTPLEFFETLYpADPREEQRKY----LGRFGVSGpMQVRKMGELSDGQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAVN---EYEGGLVLVSHDMR 665 
                  5555566664.577777888999999999**************************988886555444321...........123333333444444444302344444332....2333443313346677888888888777777777888888888888888777666655433...34556667777765 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00037     0.022     339     398 ..     146     207 ..     124     219 .. 0.76
   2 ?   -3.2   0.0       7.7   4.7e+02     465     498 ..     316     349 ..     294     383 .. 0.77
   3 !   12.4   0.0   0.00015    0.0093     368     495 ..     516     633 ..     493     643 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00037
   TIGR01194 339 lkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklll..GlyipqeGel 398
                  +dv+++    +   +  l    + +++G+   ++G nGcGkstl+k l    l ip++ ++
  MMETSP1061-20121228|8945_1 146 ARDVNVTNVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGarALPIPNSIDI 207
                 577777777777777788888888899999999**************985114566666555 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 7.7
   TIGR01194 465 stttdlstGqrkrlalvnayleerpvllldewaa 498
                   t d+s G r r++l  a + +   lllde + 
  MMETSP1061-20121228|8945_1 316 KKTKDFSGGWRMRVSLARALFIQPVCLLLDEPTN 349
                 358899999999*999999988877888998665 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 0.00015
   TIGR01194 368 elvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqasldqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvlllde 495
                   v +vG nG Gk+tl+kl+ G      G++  +G+       + + d++    +   +f+ l   d ++     + ++yl r+++   ++v  ++     +ls Gq+ r+ l     e   +lllde
  MMETSP1061-20121228|8945_1 516 SRVALVGPNGAGKTTLVKLMAGELNATLGDIRPHGHLKLGRFTQHFVDVLDLDKTPLEFFETLYPADPRE-----EQRKYLGRFGVSGPMQVRKMG-----ELSDGQKSRVVLAKLGREVPHILLLDE 633
                 56889*****************999999999999988777777777777777777788888888755443.....456788888888888887654.....678888888888777777777888887 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.2     0.003      0.18     768     812 ..     153     197 ..      35     200 .. 0.79
   2 ?    4.6   0.0     0.017         1     171     243 ..     287     354 ..     276     373 .. 0.75
   3 ?   -1.6   0.2       1.3        77     321     385 ..     389     453 ..     376     464 .. 0.62
   4 ?    4.8   0.3     0.014      0.88     791     814 ..     517     540 ..     426     548 .. 0.75
   5 ?   -1.1   0.0      0.86        53     213     252 ..     611     650 ..     606     697 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.003
   TIGR00956 768 evkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeR 812
                 +v +++   vlLde + +++ G+   L+G  G Gk tLl +L  R
  MMETSP1061-20121228|8945_1 153 NVTLQHMGAVLLDETSVVLNHGNRYGLIGRNGCGKSTLLKALGAR 197
                 46777778899******************************9988 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.017
   TIGR00956 171 RvkgvsreeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsa 243
                 R + ++ ++ a+ +a  +l+ +G +h  + k   d+    sGG r Rvs+a +l  ++  +++D+ t  LD  
  MMETSP1061-20121228|8945_1 287 RLDALDAST-AEVRARSILSGLGFTHEMQSKKTKDF----SGGWRMRVSLARALFIQPVCLLLDEPTNHLDME 354
                 555555443.34444556677788888888887777....999999999999999999999999999999965 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 1.3
   TIGR00956 321 sltspkereikkgyekkvprtake.fekywrnspeyaelekeideylerveeekekeaikesavak 385
                   t++k+  +  g  ++  +t +e  e+ w++++  ++  k+++ey +r  + + k+  k+++ ++
  MMETSP1061-20121228|8945_1 389 HFTNQKSLVYYDGNYDQFVKTKSEkEENQWKQYKWEQDSIKQMKEYIARFGHGTAKN-AKQAQSKE 453
                 345556555555656665555555156789999999999999999999966643333.33444333 PP

  == domain 4    score: 4.8 bits;  conditional E-value: 0.014
   TIGR00956 791 ltALmGasGAGkttLlnvLaeRvt 814
                   AL+G  GAGkttL+  +a+ ++
  MMETSP1061-20121228|8945_1 517 RVALVGPNGAGKTTLVKLMAGELN 540
                 579*************99998654 PP

  == domain 5    score: -1.1 bits;  conditional E-value: 0.86
   TIGR00956 213 GerkRvsiaevlvakakiqcwDnatrGLDsatalefvkal 252
                 G++ Rv +a      ++i+++D+ t  LD      ++ka+
  MMETSP1061-20121228|8945_1 611 GQKSRVVLAKLGREVPHILLLDEPTNHLDMESIDALAKAV 650
                 5555555555555555555555555555544433333333 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0     0.016         1       4      23 ..     178     197 ..     175     213 .. 0.87
   2 !    8.8   0.0    0.0063      0.38       2      23 ..     517     538 ..     516     542 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.016
   TIGR02528   4 mliGsvgcGkttLtqaLkge 23 
                  liG+ gcGk tL +aL   
  MMETSP1061-20121228|8945_1 178 GLIGRNGCGKSTLLKALGAR 197
                 58**************9765 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0063
   TIGR02528   2 rimliGsvgcGkttLtqaLkge 23 
                 r++l+G+ g+GkttL++ + ge
  MMETSP1061-20121228|8945_1 517 RVALVGPNGAGKTTLVKLMAGE 538
                 89*************9877665 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.0     0.014      0.86       7      23 ..     178     194 ..     174     200 .. 0.89
   2 ?    5.6   0.0     0.045       2.7       5      23 ..     517     535 ..     514     541 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.014
   TIGR00231   7 vivGhvdvGKstLlnsl 23 
                 +++G+ ++GKstLl+ l
  MMETSP1061-20121228|8945_1 178 GLIGRNGCGKSTLLKAL 194
                 79************987 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.045
   TIGR00231   5 kivivGhvdvGKstLlnsl 23 
                 ++++vG  ++GK+tL + +
  MMETSP1061-20121228|8945_1 517 RVALVGPNGAGKTTLVKLM 535
                 799************9766 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00018     0.011      33      58 ..     518     543 ..     512     556 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00018
   TIGR00635  33 vllyGPPGlGkttlakiiakelgvkl 58 
                 v l+GP G Gkttl k++a el+++l
  MMETSP1061-20121228|8945_1 518 VALVGPNGAGKTTLVKLMAGELNATL 543
                 679*******************9876 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0023      0.14      37      79 ..     173     215 ..     156     249 .. 0.77
   2 ?    1.4   0.0      0.69        42      38      59 ..     515     536 ..     504     567 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0023
   TIGR03420  37 aerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaq 79 
                 +++ + l+G +g+Gks LL+A+ a+a    +s+  + lke ++
  MMETSP1061-20121228|8945_1 173 HGNRYGLIGRNGCGKSTLLKALGARALPIPNSIDIFFLKEEVE 215
                 56667799***************99988877777766666655 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.69
   TIGR03420  38 erllylwGesgsGksHLLqAac 59 
                 ++ + l+G++g Gk+ L++ ++
  MMETSP1061-20121228|8945_1 515 DSRVALVGPNGAGKTTLVKLMA 536
                 67789**********9987655 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.018       1.1       3      22 ..     178     197 ..     177     256 .. 0.88
   2 ?    4.2   0.1      0.12       7.6       2      21 ..     518     537 ..     517     546 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.018
   TIGR00152   3 gltGgigsGKstvakilkdk 22 
                 gl+G+ g+GKst++k+l  +
  MMETSP1061-20121228|8945_1 178 GLIGRNGCGKSTLLKALGAR 197
                 89*************99765 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.12
   TIGR00152   2 igltGgigsGKstvakilkd 21 
                 ++l+G  g GK+t++k+++ 
  MMETSP1061-20121228|8945_1 518 VALVGPNGAGKTTLVKLMAG 537
                 89*************99875 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0    0.0011      0.07     141     166 ..     169     194 ..     129     201 .. 0.87
   2 ?   -0.7   0.0       1.6        97     148     173 ..     517     542 ..     511     549 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0011
   TIGR02546 141 ltvgeGqRiGifaeaGvGkstLlsmi 166
                 + + +G R G+ +  G+GkstLl+++
  MMETSP1061-20121228|8945_1 169 VVLNHGNRYGLIGRNGCGKSTLLKAL 194
                 56789******************987 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 1.6
   TIGR02546 148 RiGifaeaGvGkstLlsmiargakad 173
                 R+ + +  G+Gk+tL++ +a + +a+
  MMETSP1061-20121228|8945_1 517 RVALVGPNGAGKTTLVKLMAGELNAT 542
                 8999999*********9998877665 PP

>> TIGR01526  nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0         5   3.1e+02     166     183 ..     178     195 ..     173     201 .. 0.85
   2 ?   10.4   0.0   0.00094     0.058     163     190 ..     516     543 ..     505     551 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 5
   TIGR01526 166 ailGgestGkstLvrkla 183
                  ++G +  GkstL ++l 
  MMETSP1061-20121228|8945_1 178 GLIGRNGCGKSTLLKALG 195
                 57999*********9985 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00094
   TIGR01526 163 ktvailGgestGkstLvrklaeklntts 190
                  +va++G++ +Gk+tLv+ +a  ln+t 
  MMETSP1061-20121228|8945_1 516 SRVALVGPNGAGKTTLVKLMAGELNATL 543
                 58***********************986 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.096       5.8      27      44 ..     178     195 ..     164     200 .. 0.81
   2 ?    5.6   0.0     0.025       1.5      23      41 ..     516     533 ..     505     541 .. 0.79
   3 ?   -1.4   0.0       3.4   2.1e+02     305     330 ..     628     653 ..     616     666 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.096
   TIGR00611  27 vlvGeNgqGKtnlleaiy 44 
                  l+G Ng GK  ll+a+ 
  MMETSP1061-20121228|8945_1 178 GLIGRNGCGKSTLLKALG 195
                 69**************86 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.025
   TIGR00611  23 pgvnvlvGeNgqGKtnlle 41 
                 ++v +lvG+Ng GKt l++
  MMETSP1061-20121228|8945_1 516 SRV-ALVGPNGAGKTTLVK 533
                 333.79*********9986 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 3.4
   TIGR00611 305 illlDDvaseLDeqrreaLaelleek 330
                 illlD     LD +  +aLa++++e 
  MMETSP1061-20121228|8945_1 628 ILLLDEPTNHLDMESIDALAKAVNEY 653
                 9********************99875 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.98        60     127     144 ..     179     196 ..     165     201 .. 0.87
   2 ?    8.3   0.0    0.0054      0.33     125     172 ..     518     567 ..     510     571 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.98
   TIGR00157 127 faGqSGVGKSSLiNlldp 144
                 ++G+ G GKS L+ +l +
  MMETSP1061-20121228|8945_1 179 LIGRNGCGKSTLLKALGA 196
                 79***********99865 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0054
   TIGR00157 125 svfaGqSGVGKSSLiNlldpevkqkvkevs..eklklGkhTTtsvelfhl 172
                   ++G+ G GK  L+ l+ +e+++++ ++   ++lklG+ T   v + +l
  MMETSP1061-20121228|8945_1 518 VALVGPNGAGKTTLVKLMAGELNATLGDIRphGHLKLGRFTQHFVDVLDL 567
                 4589************************9633678999999887776665 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0       1.4        84      27      43 ..     179     195 ..     154     205 .. 0.82
   2 ?    8.5   0.1    0.0059      0.36      20      46 ..     513     539 ..     504     546 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 1.4
   TIGR00150  27 LkGdlGaGKttlvkgll 43 
                 L G  G GK tl+k+l+
  MMETSP1061-20121228|8945_1 179 LIGRNGCGKSTLLKALG 195
                 77899*********996 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.0059
   TIGR00150  20 dlatvvlLkGdlGaGKttlvkgllkgl 46 
                 dl   v L G  GaGKttlvk ++ +l
  MMETSP1061-20121228|8945_1 513 DLDSRVALVGPNGAGKTTLVKLMAGEL 539
                 556678999************999877 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.1       1.5        91     250     330 ..     210     284 ..     196     303 .. 0.60
   2 ?    1.9   0.8      0.37        23     271     347 ..     375     452 ..     348     462 .. 0.60
   3 ?    7.5   0.0    0.0077      0.47      41      63 ..     520     542 ..     516     568 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 1.5
   TIGR02397 250 lleailkkdleealklleellekgvdleklledliellrdlllvkktk..selleveeeeeeslkekaeklslekllellkil 330
                 l e++  +d+ +al  + e+ e+ ++le+ ++dl +l+ +++   ++   ++   ++++++e+l+e+        ++ +l+++
  MMETSP1061-20121228|8945_1 210 LKEEVEPSDTLSALDAVMEVDEERTKLEQQADDLNKLISEVIDNPEKFsnEDSSGEPQKSSEELQEE--------IMDALNAV 284
                 4555666888899999999999999999999999999888877665532233333333333333333........23333333 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.37
   TIGR02397 271 ekgvdleklledliellrdlllvkktk.selleveeeeeeslkekaeklslekllellkilleaekelkvsenkrial 347
                 +++  l+++++++i+++++  lv +    +++ ++++e+e+ + k+ k+++++++++ +++ +  + +  + ++ +  
  MMETSP1061-20121228|8945_1 375 HSQDFLNNVCSHMIHFTNQKSLVYYDGnYDQFVKTKSEKEENQWKQYKWEQDSIKQMKEYIARFGHGTAKNAKQAQSK 452
                 344446788999999998887777666644455555555555667777777777777776655444443333333333 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0077
   TIGR02397  41 fsGprGvGKTsiArilAkalNCe 63 
                 + Gp G GKT++ +++A  lN +
  MMETSP1061-20121228|8945_1 520 LVGPNGAGKTTLVKLMAGELNAT 542
                 68******************976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (824 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       449  (0.109459); expected 82.0 (0.02)
Passed bias filter:                      239  (0.0582643); expected 82.0 (0.02)
Passed Vit filter:                        99  (0.0241346); expected 4.1 (0.001)
Passed Fwd filter:                        67  (0.0163335); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              67  [number of targets reported over threshold]
# CPU time: 1.38u 0.15s 00:00:01.52 Elapsed: 00:00:00.89
# Mc/sec: 1222.01
//
Query:       MMETSP1061-20121228|8955_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   14.6   0.1     0.0039   14.0   0.1    1.2  1  TIGR02037 degP_htrA_DO: peptidase Do


Domain annotation for each model (and alignments):
>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   9.5e-07    0.0039     269     340 ..     401     481 ..     392     492 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 9.5e-07
   TIGR02037 269 gspAekaGlkaGDvilkvngkkik.saadlreai...gtlkpgkkvklkilRkgkekei.kvtlk....eaeeekasseks 340
                 ++p  + Gl++GDvi++vn+ + + +a+dl+ +i   +++ pg++++++++ ++++ e  +++ +    +a+e+k +++k+
  MMETSP1061-20121228|8955_1 401 KGPVGRLGLRRGDVITHVNDAEWHgTAEDLQDYIyscHAHIPGDEISITVNANEETCEFlRIRREmmikRAREQKVQQQKK 481
                 6899999*************9987356789988822245669********9999987641333333333444443333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1807.52
//
Query:       MMETSP1061-20121228|8951_1  [L=878]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.4    3.5  18.4        8.1    2.6  12.8    1.3  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6  12.8     0.002       8.1      33     139 ..      36     142 ..      10     148 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.002
   TIGR03490  33 qpekkpeakpeenkPkkpkkpdnkeksensnnks..nseekdeeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqadepnndhadqknnnkvdfsdldklkkels 139
                 q++kkp   +ee++P  +     +e  + ++++   +  ++ e++ +s      +d  +++++++  +++++  +++  +de+++  + q+++++    d+dkl+ +ls
  MMETSP1061-20121228|8951_1  36 QKKKKPS--KEEDTPSLSPVDSGSEDDDSEEDSVydSDVPHYEDDDDSDGDGDGDDDDDDDDDDDDDDSDEEDFEDQGSSDEDEDLLQKQEEEEDESGDDMDKLEDNLS 142
                 8899999..7777999887766666655555444634444444444444444455555556666667788888889999999988888888888888899*****9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (878 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.42
# Mc/sec: 2759.20
//
Query:       MMETSP1061-20121228|8960_1  [L=1412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.14s 00:00:00.71 Elapsed: 00:00:00.35
# Mc/sec: 5324.82
//
Query:       MMETSP1061-20121228|8962_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-22   76.1   0.0    8.3e-22   75.1   0.0    1.6  1  TIGR00090 iojap_ybeB: iojap-like ribosome-associated protein


Domain annotation for each model (and alignments):
>> TIGR00090  iojap_ybeB: iojap-like ribosome-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0     2e-25   8.3e-22       2      99 .]     110     211 ..     109     211 .. 0.89

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 2e-25
   TIGR00090   2 lelivealedkkaedivvldvrekssiadyfviasgeserqvkaladeveeelkek.glkplrv...egkeegeWvlvDlgdvvvhifqeeaRefYdLEklw 99 
                 ++ iv+a++ +ka++iv++ v+++s+i+ ++vi++g+s+ q +a+a+ v+e+++e+ gl p ++   eg+ ++ W+++D+g+v+vh++++ +R fY++E  w
  MMETSP1061-20121228|8962_1 110 VNCIVRAADGRKADNIVAIRVSKVSTITSFVVICTGNSRPQNQAIASIVQEDVSEQfGLLPGATgvpEGSADSGWTILDYGSVMVHVMTPRSRLFYNVEGKW 211
                 67899************************************************66525544433334899999**************************877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 2817.14
//
Query:       MMETSP1061-20121228|8944_1  [L=677]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-241  799.7   2.8   3.6e-241  799.3   1.9    1.0  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    1.9e-57  192.7   3.0    1.5e-32  110.4   0.3    3.2  3  TIGR00484 EF-G: translation elongation factor G
    2.5e-54  182.4   0.1    9.7e-52  173.9   0.1    2.2  1  TIGR01393 lepA: GTP-binding protein LepA
      8e-54  180.7   4.1    1.5e-33  113.7   1.7    3.1  3  TIGR00490 aEF-2: translation elongation factor aEF-2
    7.7e-24   82.2   0.2    1.8e-23   80.9   0.1    1.6  1  TIGR00231 small_GTP: small GTP-binding protein domain
    6.3e-22   75.6   1.1    1.1e-21   74.8   0.8    1.3  1  TIGR00485 EF-Tu: translation elongation factor Tu
    1.1e-21   74.7   0.5    2.1e-18   63.9   0.1    2.2  2  TIGR00503 prfC: peptide chain release factor 3
    2.8e-17   60.1   0.5    4.9e-17   59.3   0.4    1.3  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    2.5e-14   50.7   0.2    4.6e-14   49.8   0.1    1.4  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    8.6e-14   49.0   5.7    1.1e-13   48.6   1.5    2.3  2  TIGR00487 IF-2: translation initiation factor IF-2
    1.1e-13   48.8   0.2    3.2e-13   47.3   0.1    1.7  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    1.1e-11   41.7   0.5    1.7e-11   41.1   0.4    1.2  1  TIGR00491 aIF-2: translation initiation factor aIF-2
    2.2e-07   28.3   0.4    2.8e-06   24.6   0.3    2.1  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    3.7e-05   20.7   0.1     0.0026   14.7   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
  ------ inclusion threshold ------
      0.013   12.2   0.2      0.046   10.4   0.0    1.8  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
       0.02   11.8   0.2       0.11    9.4   0.1    2.0  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE


Domain annotation for each model (and alignments):
>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  799.3   1.9  1.4e-243  3.6e-241       1     587 [.      66     666 ..      66     672 .. 0.96

  Alignments for each domain:
  == domain 1    score: 799.3 bits;  conditional E-value: 1.4e-243
   TIGR01394   1 irniaiiahvDhGkttlvDklLkqsgvlrekeevee...rvmDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdevfdLfvelgaddeqldfpvvyasakeGvasleeedesedleplfdailehvpaPkadkd..eplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdivavaGledieigetiadaee.....aealpllkvdePtlsmtfsvndsPlaGkegkkvtsrkirdrLereletnvalrveeteeadkfevsGrGeLhlsiLietmrreGfelsvskPkvivke..idgkklePieeltidvpeefvgavieklgkrkgelkdmeskgs.GrvrlefkiPsrgliGfrtefltatrGegilnrvfdeyeplk.geiekrkkGslvsleeGtatayallnleerGklfvspgeevyeGmivGehsreeDldvnvlkekkltnvrssgkdeavkltpprklsLeealeyiedDelvevtPksirlrkkvl 587
                 irnia+iahvDhGkttlvD+l++qsgv+r+ ++ +e   rvmDs+d ererGitil+kn av+ +++kini+DtPGhaDfGGevervl+m dgvlllvD++eGp pqtrfvl kal++g+k +vv+nk+Drp+ar++ vvd+vfdLfv+lga+deq df vvyas+ +G a  + e  ++d+ plfdaile +++P+++k   e+lq+l++++d d + G++ i+r+++G+vk+gq ++l++ d+ +++++i++l++f +l ++e+dea+aG+i++ +G++ +eig+t++++e+     a +l+ ++v++Pt++mt+ vn+sPlaG+egk++tsr+ir+rL +el++nval+veet++ad++evsGrG+Lhl++LietmrreGfel+v+ P+vi k+  + gk+ eP e++ + vp+e+ g+vi+ l +rkgel+dm  + s G + +++ +P+rg++G+r+++l++trG++++++vfd+y+p   g+i++r++Gsl+++++G at++ +  ++ rGk+fvs g++vy+Gmi+G+++r+ Dl+vn++k+k+l n+r+++kd+++ +++p+++sL+ ++ey++ De++evtP+  r+ k+  
  MMETSP1061-20121228|8944_1  66 IRNIAVIAHVDHGKTTLVDALIRQSGVFRDDNQADEagqRVMDSEDQERERGITILSKNLAVQRDGIKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVVVNKVDRPAARVDYVVDNVFDLFVDLGATDEQTDFRVVYASGLQGRAGDDPEALADDMGPLFDAILESIDPPSVEKPepEALQALISNIDFDPFKGKMGIARITNGSVKNGQPISLVHPDKDKRTGKINELFVFDNLGKKEVDEASAGEIIMFSGVDGVEIGDTLVTNENaglnaAGPLEPIAVEQPTVRMTIGVNKSPLAGREGKFLTSRMIRERLFKELDRNVALQVEETDSADRYEVSGRGQLHLTVLIETMRREGFELEVGPPTVIFKTneETGKTEEPWESVEVRVPDEYNGSVIDLLNTRKGELQDMGIEESsGMSVVKYLVPTRGMLGLRSALLSSTRGTALIDSVFDSYRPKIsGDIQARDQGSLLAFADGDATTFGIEGAQTRGKMFVSVGDDVYKGMIIGINQRPGDLEVNICKTKQLNNMRAASKDKNAGIVTPIEMSLDACVEYLAVDEILEVTPSLFRMSKNPE 666
                 8****************************97766543449************************************************************************************************************************************************************9887612569***********************************************************************************9876522221578********************************************************************************************99855779***********************************866544***************************************9766***************************************************************************************************************9865 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.4   0.3   5.9e-35   1.5e-32       6     151 ..      62     208 ..      58     218 .. 0.95
   2 !   51.1   0.0   5.2e-17   1.3e-14     305     483 ..     268     462 ..     256     470 .. 0.75
   3 !   29.8   0.0   1.4e-10   3.5e-08     601     674 ..     471     546 ..     468     555 .. 0.90

  Alignments for each domain:
  == domain 1    score: 110.4 bits;  conditional E-value: 5.9e-35
   TIGR00484   6 dleklrniGisahidaGktttterilfytgkihkigevh.dGaatmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPrivfvnkmdkiGanflkvveql 151
                  ++++rni + ah+d Gktt+ + ++  +g+    ++    G+ +md+ +qe+erGiti s   +v+  +++in++dtPGh df  ever l + dG ++++d+v G +pq+  v  +a   ++  +v vnk+d+  a + +vv+++
  MMETSP1061-20121228|8944_1  62 TIDNIRNIAVIAHVDHGKTTLVDALIRQSGVFRDDNQADeAGQRVMDSEDQERERGITILSKNLAVQRDGIKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVVVNKVDRPAARVDYVVDNV 208
                 5899***************************999888874699***********************************************************************************************999999876 PP

  == domain 2    score: 51.1 bits;  conditional E-value: 5.2e-17
   TIGR00484 305 depfvalafkvatdpfvgkltfvrvysGvlksGsevlnsrkekkervgrlvkmha...nkreeieevraGdiaaliGlkdtttGdtlcdekaevi.....lesmefpePvislavePktkadqekmgial.g.....klaee.dP..tfkvftdeesgqtiiaGmGelhldiivdrlkrefkvevnvGkPqvayre 483
                  e + al   +  dpf gk+   r+ +G +k+G+ +  ++ +k +r g++ ++       ++e++e  aG+i+ + G++ +  Gdtl+ ++++       le + + +P + +++   +   + + g+ l +     +l +e d   +++v   + +++  ++G G+lhl ++++ ++re   e +vG P v ++ 
  MMETSP1061-20121228|8944_1 268 PEALQALISNIDFDPFKGKMGIARITNGSVKNGQPISLVHPDKDKRTGKINELFVfdnLGKKEVDEASAGEIIMFSGVDGVEIGDTLVTNENAGLnaagpLEPIAVEQPTVRMTIGVNKSPLAGREGKFLtSrmireRLFKElDRnvALQVEETDSADRYEVSGRGQLHLTVLIETMRRE-GFELEVGPPTVIFKT 462
                 5667899999***************************9999999999998777641114689*************************9887543212333999******9998886655544444444441211111455544441134444444556778*******************.47999******9974 PP

  == domain 3    score: 29.8 bits;  conditional E-value: 1.4e-10
   TIGR00484 601 ePimkvevevPeeylGdvlGdlsrrrglie..gseeresvkvvkaevPlsemfGyatdlrsatqGraeysmeflky 674
                 eP   vev vP+ey G v+  l+ r+g ++  g ee++ ++vvk  vP   m+G  ++l s+t+G a     f+ y
  MMETSP1061-20121228|8944_1 471 EPWESVEVRVPDEYNGSVIDLLNTRKGELQdmGIEESSGMSVVKYLVPTRGMLGLRSALLSSTRGTALIDSVFDSY 546
                 78899***********************98345689999**************************99877777777 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.9   0.1   3.8e-54   9.7e-52       2     477 ..      65     548 ..      64     555 .. 0.78

  Alignments for each domain:
  == domain 1    score: 173.9 bits;  conditional E-value: 3.8e-54
   TIGR01393   2 kirnfsiiahidhGkstladrllektkavserelk....eqlldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdleiiPvinkidlPsadvervkkeieev...iGldaee....ailvsaktGigiee..........lleaivkkvpaPkgdke..aplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkey...eveevgvltpkl.vkeeelkaGevGyliagikdvkdvkvGdtitsvkk...pakealpGfkkvkpvvfagl....yPidsedyeelrdaleklkl...ndasltyekesskalGfGfrcGflGllhleviqerlere.fdldliataPsvvykvklkdgevievenPselpeeekieeveePyvkatiivpeeylgailelcqekrgvlkkleyldkerv.elvyelPlaeivldffdklksiskGyasldyelieyre 477
                 +irn+++iah+dhGk+tl+d l++++++  + ++     ++++ds d ererGiti ++++ ++      +  ++n++dtPGh+df  ev r l+ c+G+lllvd++ G + qt   +  al k ++ + v+nk+d P+a v+ v +++ ++   +G   e+    ++ +s+ +G + ++          l++ai++ + +P+ +k   ++l+ali +  +d+++G +   r+++G++k+g+ i l++ +k+    +++e++v+     ++ +e +aGe+ +       v  v++Gdt+ + ++   +a+ +l+     +p v  ++     P    + + l   + + +l    d  +  + e + +    + +   G lhl v+ e + re f+l+  +  P+v++k ++++g                  + eeP+ ++++ vp+ey g++++l+++++g+l+++ + +++ +  ++y +P    +l +   l s ++G a +d  +  yr 
  MMETSP1061-20121228|8944_1  65 NIRNIAVIAHVDHGKTTLVDALIRQSGVFRDDNQAdeagQRVMDSEDQERERGITILSKNLAVQR-----DGIKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVVVNKVDRPAARVDYVVDNVFDLfvdLGATDEQtdfrVVYASGLQGRAGDDpealaddmgpLFDAILESIDPPSVEKPepEALQALISNIDFDPFKGKMGIARITNGSVKNGQPISLVHPDKDKrtgKINELFVFDNLGkKEVDEASAGEIIM----FSGVDGVEIGDTLVTNENaglNAAGPLEPIAVEQPTVRMTIgvnkSPLAGREGKFLTSRMIRERLfkeLDRNVALQVEETDSA-DRYEVSGRGQLHLTVLIETMRREgFELE--VGPPTVIFKTNEETG------------------KTEEPWESVEVRVPDEYNGSVIDLLNTRKGELQDMGIEESSGMsVVKYLVPTRG-MLGLRSALLSSTRGTALIDSVFDSYRP 548
                 8**************************998765541111579*****************999875.....4689**************************************************************************99863336765443233367888877764332222222344489**********977653478************************************99887611256666666544325556666666533....4578999*****98877722246667777777788887655323357766665555554433332111344444444444433.46999999**************956666..589***998766555..................4579999****************************9988776615689999876.5789999*********99998888875 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   1.7   5.7e-36   1.5e-33      16     167 ..      63     213 ..      59     220 .. 0.88
   2 !   44.9   0.0   3.6e-15   9.3e-13     282     467 ..     264     462 ..     238     470 .. 0.73
   3 !   20.0   0.0   1.3e-07   3.2e-05     623     696 ..     471     546 ..     466     557 .. 0.87

  Alignments for each domain:
  == domain 1    score: 113.7 bits;  conditional E-value: 5.7e-36
   TIGR00490  16 pefirnigivahidhgkttlsdnllagagmiseelage...qlfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenvkpvlfinkvdrlinelkltaeelqerli 167
                  + irni ++ah+dhgkttl d l+  +g+  ++   +   q+++d ++qe+ergiti + n+++      +   in++dtpgh dfgg+v r +   dg++++v++veg  pqt  vl +al + +k ++ +nkvdr    ++   +++ + ++
  MMETSP1061-20121228|8944_1  63 IDNIRNIAVIAHVDHGKTTLVDALIRQSGVFRDDNQADeagQRVMDSEDQERERGITILSKNLAVQR----DGIKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVVVNKVDRPAARVDYVVDNVFDLFV 213
                 589***************************9876543324489*******************98743....4578***************************************************************88777776666666555 PP

  == domain 2    score: 44.9 bits;  conditional E-value: 3.6e-15
   TIGR00490 282 lncdpegplavvitkivvdkhagevavgrlysgaikkgsevylvd...skakariqqvgvymgpervevdeipagnivavvglkeavageticstdk.kikafeaikhi..sepvvtvaieaknt.......kdlpklievlr.kvake.dptvkvei..neetgehlisgmgelhleiivkkirekagvevetsepivvyre 467
                  + +pe  l ++i++i  d+  g++ ++r+ +g++k+g+ + lv+   +k   +i+++ v+    + evde +ag+i+   g+     g+t+ + ++  ++a   ++ i   +p v ++i   ++       k l     ++r ++ ke d  v +++   + +  + +sg g+lhl + ++ +r++ g e+e+++p v+++ 
  MMETSP1061-20121228|8944_1 264 EKPEPEA-LQALISNIDFDPFKGKMGIARITNGSVKNGQPISLVHpdkDKRTGKINELFVFDNLGKKEVDEASAGEIIMFSGVDGVEIGDTLVTNENaGLNAAGPLEPIavEQPTVRMTIGVNKSplagregKFLTSR--MIReRLFKElDRNVALQVeeTDSADRYEVSGRGQLHLTVLIETMRRE-GFELEVGPPTVIFKT 462
                 5556654.67799*******************************722134456899999999999**************************98876525777666665511689999988764331222111333322..2221344444555555550055677889**************99998.*************85 PP

  == domain 3    score: 20.0 bits;  conditional E-value: 1.3e-07
   TIGR00490 623 eplqkvfinvpqdlmgaatreiqnrrgqilemkqe..gdmvtikakvpvaemfgfagairgategralwstefagf 696
                 ep + v + vp+++ g+++  +++r+g++ +m  e    m ++k  vp + m+g+  a+ ++t+g al    f  +
  MMETSP1061-20121228|8944_1 471 EPWESVEVRVPDEYNGSVIDLLNTRKGELQDMGIEesSGMSVVKYLVPTRGMLGLRSALLSSTRGTALIDSVFDSY 546
                 89999************************9996552267***************************9987666555 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   0.1   7.1e-26   1.8e-23       2     136 ..      65     209 ..      64     213 .. 0.92

  Alignments for each domain:
  == domain 1    score: 80.9 bits;  conditional E-value: 7.1e-26
   TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskp....gvtrdyvteqieedGkt............ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.dlktkvkslf 136
                 + ++i++++hvd+GK+tL + l++++++   +++    g   ++ ++q++e+G+t            +k+n++DT+G++df         ever+l ++d+v+l++d  eg+++qt+ + + a +kg++ ++vvnK+D     +++ v  +f
  MMETSP1061-20121228|8944_1  65 NIRNIAVIAHVDHGKTTLVDALIRQSGVFRDDNQadeaGQRVMDSEDQERERGITilsknlavqrdgIKINIMDTPGHADF-------GGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVVVNKVDRPAaRVDYVVDNVF 209
                 6789*********************998766655677799999**************************************.......**************************************************99887777776665 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.8   4.4e-24   1.1e-21      13     287 ..      67     350 ..      57     365 .. 0.81

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 4.4e-24
   TIGR00485  13 vnvgtighvdhgkttltaaitt...vlakegkaaakkydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseydfpgd..dvpivrgsalkalegd..aeweekilelmeavdeyiptperevdkpf.lla.iedvfsitgrgtvvtgrvergevkvgeeveivglk.etkkttvtgvemf....kklldeakagdnvgvllrgvkkeei 287
                  n+  i hvdhgkttl  a+ +   v+ ++++a+      +d+  +e++rgiti + ++  + +  +   +d pghad+  ++       dg +l+v + +gp pqtr  +  a   g+  lvv +nkvd       ++ v  +v +l+ + +   +  d  +v+ s l+   gd  ++  + +  l +a+ e i+ p+ e  +p  l a i ++     +g +   r+ +g vk g+ +++v    +++   +  + +f    kk++dea ag+ +  ++ gv+  ei
  MMETSP1061-20121228|8944_1  67 RNIAVIAHVDHGKTTLVDALIRqsgVFRDDNQADEAGQRVMDSEDQERERGITILSKNLAVQRDGIKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVV-VNKVDRPAA--RVDYVVDNVFDLFVDLGATDEqtDFRVVYASGLQGRAGDdpEALADDMGPLFDAILESIDPPSVEKPEPEaLQAlISNIDFDPFKGKMGIARITNGSVKNGQPISLVHPDkDKRTGKINELFVFdnlgKKEVDEASAGEII--MFSGVDGVEI 350
                 499*************999865333788999999999999****************************************9999999999******************9888888999988876.7**997654..578888899999988776554127789******98886622578999*************998776665413332344434456899999*****************87515555567766665555589********975..5566665555 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.9   0.1   8.2e-21   2.1e-18       6     150 ..      61     202 ..      57     214 .. 0.84
   2 !    8.8   0.0    0.0004       0.1     310     382 ..     284     359 ..     271     371 .. 0.76

  Alignments for each domain:
  == domain 1    score: 63.9 bits;  conditional E-value: 8.2e-21
   TIGR00503   6 kevdkrrtfaiishpdaGkttltekvllyGnaiqeaGavkargsqrsaksdwm...emekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlpiltflnkldrdirdpl 150
                 k +d+ r++a+i+h d Gkttl + ++   +  ++       + + +a    m   + e++rGi+i +  l  +  +  +n++dtpGh df  +  r l   d +l+++d+  G + +tr +l+ +  + +  l  +nk+dr+     
  MMETSP1061-20121228|8944_1  61 KTIDNIRNIAVIAHVDHGKTTLVDALIRQSGVFRD------DNQADEAGQRVMdseDQERERGITILSKNLAVQRDGIKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVVVNKVDRPAARVD 202
                 568999****************9988655555554......44444444444400056788*********************************************************************************987655 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0004
   TIGR00503 310 rdrvaflrvvsGkyekdmklkhvrtgkdvvlsdalkllagd...resveeayaGdiiGlhnhGtiqiGdtvtqGek 382
                 + ++ + r+  G  + +  +  v   kd +  +  +l+  d   +++v+ea aG+ii +     ++iGdt+ + e+
  MMETSP1061-20121228|8944_1 284 KGKMGIARITNGSVKNGQPISLVHPDKDKRTGKINELFVFDnlgKKEVDEASAGEIIMFSGVDGVEIGDTLVTNEN 359
                 45666677887877777777777777777766666666554333799************************99886 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.4   1.9e-19   4.9e-17       8     258 ..      67     301 ..      61     357 .. 0.78

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 1.9e-19
   TIGR00483   8 lnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevef..ipvsaykgdnvvkksenapwykgktllealdkleap..ekpvdkplripiqdvysitgvgtvpvgrvetgvlkkge 258
                  n+a+i hvd+gk+tlv  l+ ++g   +   +    ea ++         v+d   +ererg+ti       + d  ++ i+d+pgh df  ++       d  +l+v++ +g    +pqtr  +  a + g+k l+v +nk+d+      + + ++++v +l+  +g   ++ +f  +  s+++g    +  e      g+ +   l+++++p  ekp    l+  i ++      g + + r+  g +k+g+
  MMETSP1061-20121228|8944_1  67 RNIAVIAHVDHGKTTLVDALIRQSGVFRDDNQA---DEAGQR---------VMDSEDQERERGITILSKNLAVQRDGIKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEG---PKPQTRFVLDKALSKGMKALVV-VNKVDRP---AARVDYVVDNVFDLFVDLGATDEQTDFrvVYASGLQGRA-GDDPEALADDMGPLFDAILESIDPPsvEKPEPEALQALISNIDFDPFKGKMGIARITNGSVKNGQ 301
                 59***********************98776543...455554.........9***************999******************************************99...99****99999999***99876.8999985...67899999*****9999**99999998434556666532.22333333333443333344445552235555555555555555555666666777777777666 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.1   1.8e-16   4.6e-14       2     117 ..      68     198 ..      67     235 .. 0.86

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 1.8e-16
   TIGR00475   2 iiataGHvDHGKttLlkaltgid................adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvd 117
                 +ia+  HvDHGKttL+ al   +                 d   +E+ RG+ti      ++ +  +++++D PGH  f  ++   ++  d++lL+vd+ eG+k+qt+  L  + + g+k  +vv++K+Dr  
  MMETSP1061-20121228|8944_1  68 NIAVIAHVDHGKTTLVDALIRQSgvfrddnqadeagqrvMDSEDQERERGITILSKNLAVQRDGIKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMK-ALVVVNKVDRPA 198
                 68999**************8777777899998888877777888999******76666677777**********************************************999999999.89999****964 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   1.5   4.4e-16   1.1e-13      89     235 ..      68     234 ..      45     245 .. 0.75
   2 ?   -0.2   0.1      0.26        66     508     578 ..     286     358 ..     264     364 .. 0.77

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 4.4e-16
   TIGR00487  89 vvtimGhvDhGktsLLds.irktkv.....aegeaG.............GitqhiGayqvekedkkkitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvPiivainkiDkpeanpDrvkqelsey..glvpeewGGetifvpvsalkg 235
                  ++++ hvDhGkt+L+d  ir+  v     ++ eaG             Git       v+ +   ki  +DtPGh+ f     r  ++ D v+l v + +G kpqt   ++ a + ++  +v++nk+D+p a  D v +++ ++  +l + +   +  +v  s l+g
  MMETSP1061-20121228|8944_1  68 NIAVIAHVDHGKTTLVDAlIRQSGVfrddnQADEAGqrvmdsedqererGITILSKNLAVQRDG-IKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVVVNKVDRPAARVDYVVDNVFDLfvDLGATDEQTDFRVVYASGLQG 234
                 48899************74788777332223456664444444444444666666666666444.48***********************************************************************999877533555666666666666666666 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.26
   TIGR00487 508 aiaGcvvkeGvikrdnklrvlrdgvvifeGeidsLkrfkd.dvkeveegyeCG.iviknyndikvGDiieafe 578
                 ++  + +++G +k ++++ ++  ++   +G+i+ L  f +   kev+e      i+ + ++ + +GD +++ e
  MMETSP1061-20121228|8944_1 286 KMGIARITNGSVKNGQPISLVHPDKDKRTGKINELFVFDNlGKKEVDEASAGEiIMFSGVDGVEIGDTLVTNE 358
                 455567899************9999999*****9988855223455444433327889999999999998766 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.1   1.2e-15   3.2e-13       9     301 ..      75     359 ..      68     444 .. 0.77

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 1.2e-15
   TIGR02034   9 vddGkstliGrllhdtkqiledqlaalerdskkkgtegeeidlallvdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdyd.eevfeeikkdylalaeklgvsdvtviPlsalkGdnvveksesmpWyeGptllevletveveesaeeeelrlpvqyvnrpnldfrGyaGt..iasGsvkvGdevvvlpsgr...esrvarivtfd....gelekaeaGeavtlvledeidisrGdllaaade 301
                 vd Gk+tl+  l+  +    +d+ a         ++ g       ++d  + ere+giti       + d  k  + dtPGh  +  ++      +d ++llvd+ +G   qtr     a   G+k +v+ vnk+d      + v +++ + ++ l ++ +++d++v+  s+l+G    +  e+     Gp +  +le+++  + ++ e+  l     n +   f+G  G+  i+ Gsvk G+ + ++  ++   + +++++  fd    +e+++a+aGe + +   d ++i  Gd l+++++
  MMETSP1061-20121228|8944_1  75 VDHGKTTLVDALIRQSGVFRDDNQA---------DEAG-----QRVMDSEDQERERGITILSKNLAVQRDGIKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVV-VNKVDRPAARvDYVVDNVFDLFVDLGATDEQTDFRVVYASGLQGRAGDDP-EALADDMGPLFDAILESIDPPSVEKPEPEALQALISNIDFDPFKGKMGIarITNGSVKNGQPISLVHPDKdkrTGKINELFVFDnlgkKEVDEASAGEIIMFSGVDGVEI--GDTLVTNEN 359
                 6666666666666666555444322.........1122.....23789999*********999999999999*****************************************9988888889**99986.9****866541668999**************************9876555.5555578**99999**9998877776666666655566677899999976689**********9886555000555666666664433699********99998888888..666665554 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.1   0.4   6.6e-14   1.7e-11       7     133 ..      69     196 ..      65     203 .. 0.85

  Alignments for each domain:
  == domain 1    score: 41.1 bits;  conditional E-value: 6.6e-14
   TIGR00491   7 vavlGhvdhGkttlldk.irktrvak..reaGgitqhiGaseiPidvikrlcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktPfvvaankidr 133
                 +av+ hvdhGkttl+d  ir++ v +   +a +  q++  se      +r    l k+l ++ +   + ++dtPGh  f     r   + d  +l+vd +eG kpqt   ++   +  +  +v  nk+dr
  MMETSP1061-20121228|8944_1  69 IAVIAHVDHGKTTLVDAlIRQSGVFRddNQADEAGQRVMDSEDQ--ERERGITILSKNLAVQRDGIKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVVVNKVDR 196
                 689*************7589999986225688899999988843..34556667889999999988999****************************************999877777777888899998 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.3   1.1e-08   2.8e-06       7     146 ..      68     195 ..      63     203 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 1.1e-08
   TIGR03680   7 niglvGhvDhGkttlvkal...tGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkid 146
                 ni+++ hvDhGkttlv al   +Gv+ d  + +           a   +++ e+ e+++ +t  +k       ++   k+ ++D+PGh  +   +     + dg lL +++ e  P+pqt+  l      g+k +v+v nk+d
  MMETSP1061-20121228|8944_1  68 NIAVIAHVDHGKTTLVDALirqSGVFRDDNQAD----------EAGQRVMDSEDQERERGITILSKNLAV---QRDGIKINIMDTPGHADFGGEVERVLNMCDGVLLLVDSVEG-PKPQTRFVLDKALSKGMKALVVV-NKVD 195
                 8*****************955567766544332..........245567777777777777766543332...344568************999999999**********9886.8*****99988888899998876.8988 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0     0.021       5.3     169     199 ..      60      90 ..      36      99 .. 0.71
   2 !   14.7   0.0     1e-05    0.0026      43     125 ..     127     201 ..     113     216 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.021
   TIGR03594 169 eeeeeepikiaiiGrpNvGKStLvNallgee 199
                 +++ ++  +ia+i     GK tLv al+++ 
  MMETSP1061-20121228|8944_1  60 RKTIDNIRNIAVIAHVDHGKTTLVDALIRQS 90 
                 222245679******************9986 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1e-05
   TIGR03594  43 aelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrkskkpvilvvNKvdnkkeea 125
                 ++ +g +++++DT+G         ++   ++e  ++++d +l++vd  eg +++ + + +    ++ + ++vvNKvd+ +++ 
  MMETSP1061-20121228|8944_1 127 VQRDGIKINIMDTPGH--------ADFGGEVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVVVNKVDRPAARV 201
                 5566666777777776........33444577889999999999999999999999999999999999999999999986654 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.62   1.6e+02       8      31 ..      67      90 ..      62      93 .. 0.88
   2 ?   10.4   0.0   0.00018     0.046      58     130 ..     134     199 ..     121     221 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.62
   TIGR03918  8 lhialfGrrNaGKSsliNaltgqd 31
                 +ia++ +   GK +l+ al++q+
  MMETSP1061-20121228|8944_1 67 RNIAVIAHVDHGKTTLVDALIRQS 90
                579999999************996 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00018
   TIGR03918  58 vvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkee 130
                 + ++DT+G  D g  G       ++vl+ +d +ll+vd+ ++++ + + +l+++ +k ++ +vv+nk+d   +
  MMETSP1061-20121228|8944_1 134 INIMDTPGHADFG--G-----EVERVLNMCDGVLLLVDSVEGPKPQTRFVLDKALSKGMKALVVVNKVDRPAA 199
                 5677888877766..2.....35789*******************************************8765 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0      0.53   1.4e+02     204     232 ..      61      89 ..      52      92 .. 0.86
   2 ?    9.4   0.1   0.00043      0.11     254     328 ..     129     196 ..     120     213 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.53
   TIGR00450 204 eklkdglklaivGktNvGKSSLlNallkk 232
                 + +++  ++a++ ++  GK  L+ al+++
  MMETSP1061-20121228|8944_1  61 KTIDNIRNIAVIAHVDHGKTTLVDALIRQ 89 
                 57888889*****************9987 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00043
   TIGR00450 254 leGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkdd.eliitlkkkkkdlllvlNKiDL 328
                  +Gi+++++Dt G  +   +vE++        ++ +d vl+++D  ++ +++  +++++   k  + l+v+NK D 
  MMETSP1061-20121228|8944_1 129 RDGIKINIMDTPGHADFGGEVERV--------LNMCDGVLLLVDSVEGPKPQTrFVLDKALSKGMKALVVVNKVDR 196
                 58*******************996........899*********877665655488999999999********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (677 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.62u 0.15s 00:00:00.77 Elapsed: 00:00:00.41
# Mc/sec: 2179.43
//
Query:       MMETSP1061-20121228|8965_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1242.90
//
Query:       MMETSP1061-20121228|8966_1  [L=1104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.34
# Mc/sec: 4285.76
//
Query:       MMETSP1061-20121228|8970_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1610.27
//
Query:       MMETSP1061-20121228|8972_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1571.87
//
Query:       MMETSP1061-20121228|8973_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 597.42
//
Query:       MMETSP1061-20121228|8969_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-06   24.6   0.1     0.0073   13.8   0.0    2.2  2  TIGR00195 exoDNase_III: exodeoxyribonuclease III
    1.1e-05   23.0   0.1    0.00061   17.2   0.0    2.2  2  TIGR00633 xth: exodeoxyribonuclease III (xth)


Domain annotation for each model (and alignments):
>> TIGR00195  exoDNase_III: exodeoxyribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.5e-06    0.0073      15      63 ..     200     248 ..     195     263 .. 0.76
   2 !    8.5   0.0   0.00014      0.29      91     152 ..     328     388 ..     293     392 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.5e-06
   TIGR00195  15 lkklleflkeekpDvlclqEtkvad.eqfpkelvekegYhvffsgakgys 63 
                  ++++  + + +pDvlclqE+++ + e+  ++ ++++gY+ +++++ +++
  MMETSP1061-20121228|8969_1 200 FHNIMREVIDASPDVLCLQEVQADHyENHLYASMSEQGYEGVYKQK-TRQ 248
                 577777788899**********97625566788999****999764.333 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00014
   TIGR00195  91 vivaelesvlvvnvYvPngskadeeklkyklqfleelqkyleklekkdkpvlicGDlniape 152
                   +  +++v + n+ +    +    kl    q l+el++++ +   +  p++icGD+n +p+
  MMETSP1061-20121228|8969_1 328 TNRDPINQVCIANTHLYSNKEFPDVKLWQAWQLLQELENFMVNRGAN-LPLMICGDFNSSPD 388
                 555567777788887777677778899999999*******9988877.9*********9986 PP

>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0     3e-07   0.00061      19      73 ..     203     264 ..     168     292 .. 0.72
   2 !    3.5   0.0    0.0044       9.1     119     155 ..     353     388 ..     298     390 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3e-07
   TIGR00633  19 flellkeekpDvlclQEtKvae.eqlpkelleeegYevafssakkk......gysGvallsk 73 
                 ++  +  ++pDvlclQE+ + + e+  ++ + e+gYe ++++++++      +  G al+ +
  MMETSP1061-20121228|8969_1 203 IMREVIDASPDVLCLQEVQADHyENHLYASMSEQGYEGVYKQKTRQsmglagKVDGCALFWR 264
                 455566789***********99788889999*********9988665655544555666555 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0044
   TIGR00633 119 rleyklefweallaklekeldkekpvvlcGDlNvahe 155
                 +l +  + + + l+++  ++ ++ p+++cGD+N ++ 
  MMETSP1061-20121228|8969_1 353 KLWQAWQLL-QELENFMVNRGANLPLMICGDFNSSPD 388
                 444444333.334455556677899********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 2248.21
//
Query:       MMETSP1061-20121228|8977_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-14   51.4  66.1      3e-05   21.5   2.6    7.9  9  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.9   0.2    0.0024        10      12      24 ..       4      16 ..       2      18 .. 0.82
   2 !   12.0   2.0   6.9e-06     0.028       1      26 []      19      43 ..      19      43 .. 0.90
   3 !   21.5   2.6   7.2e-09     3e-05       1      25 [.      44      67 ..      44      68 .. 0.97
   4 !   20.1   5.7   2.1e-08   8.5e-05       1      26 []      69      93 ..      69      93 .. 0.97
   5 ?   -2.6   0.1      0.26   1.1e+03       1       4 [.      94      97 ..      94     100 .. 0.81
   6 !    9.7   1.4   3.6e-05      0.15      15      26 .]     107     118 ..     107     118 .. 0.95
   7 !   15.0   0.1   7.9e-07    0.0032      16      25 ..     135     144 ..     131     145 .. 0.89
   8 ?   -2.6   0.1      0.25     1e+03       1       6 [.     146     151 ..     146     151 .. 0.84
   9 !    6.9   0.3   0.00027       1.1      17      25 ..     160     168 ..     160     169 .] 0.93

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0024
   TIGR02167 12 DlSnfdTsnVTnM 24
                D+ +++T  V +M
  MMETSP1061-20121228|8977_1  4 DIGSWNTNYVDDM 16
                999****777777 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 6.9e-06
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMss 26
                MF+ +  +++ ++++++T+nV  M++
  MMETSP1061-20121228|8977_1 19 MFYKSPMFNQ-NIDSWNTANVFSMKN 43
                8999999999.**********88875 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 7.2e-09
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                MF g ss+ s +l  +dTs+VT+Ms
  MMETSP1061-20121228|8977_1 44 MFVGASSFSS-NLQAWDTSKVTDMS 67
                9*********.*************8 PP

  == domain 4    score: 20.1 bits;  conditional E-value: 2.1e-08
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMss 26
                MF + +s+ts Dl  +dTs+VT+Mss
  MMETSP1061-20121228|8977_1 69 MFCNATSFTS-DLNLWDTSEVTDMSS 93
                999*******.*************96 PP

  == domain 5    score: -2.6 bits;  conditional E-value: 0.26
   TIGR02167  1 MFsg 4 
                MF+g
  MMETSP1061-20121228|8977_1 94 MFYG 97
                9*98 PP

  == domain 6    score: 9.7 bits;  conditional E-value: 3.6e-05
   TIGR02167  15 nfdTsnVTnMss 26 
                 n++T++V +Mss
  MMETSP1061-20121228|8977_1 107 NWNTASVKDMSS 118
                 9*********96 PP

  == domain 7    score: 15.0 bits;  conditional E-value: 7.9e-07
   TIGR02167  16 fdTsnVTnMs 25 
                 ++T++VTnM 
  MMETSP1061-20121228|8977_1 135 WNTASVTNME 144
                 *********6 PP

  == domain 8    score: -2.6 bits;  conditional E-value: 0.25
   TIGR02167   1 MFsgCs 6  
                 MFs++s
  MMETSP1061-20121228|8977_1 146 MFSESS 151
                 9*9986 PP

  == domain 9    score: 6.9 bits;  conditional E-value: 0.00027
   TIGR02167  17 dTsnVTnMs 25 
                 dTs+V nM+
  MMETSP1061-20121228|8977_1 160 DTSSVQNMK 168
                 9*******8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.09s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 969.83
//
Query:       MMETSP1061-20121228|8979_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.6   3.3      0.019   13.2   2.3    1.1  1  TIGR00061 L21: ribosomal protein L21


Domain annotation for each model (and alignments):
>> TIGR00061  L21: ribosomal protein L21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   2.3   4.6e-06     0.019      51      91 ..      49      89 ..      39      93 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.6e-06
   TIGR00061 51 PyvegakveaevekegrgkKvkvvkyrrrKksrkkqGhRqe 91
                   +g++++a+ ++++++++v  v+ ++++++++k+ h q+
  MMETSP1061-20121228|8979_1 49 NNGNGSQLRANNQQHNQQQRVSFVRQQQQRQEHRKEHHHQQ 89
                5568999*********************9999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       368  (0.0897123); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 432.38
//
Query:       MMETSP1061-20121228|8978_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|8976_1  [L=944]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-12   44.5   0.0     0.0091   13.4   0.0    4.1  4  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0   0.00019      0.77      47      81 ..     420     455 ..     408     486 .. 0.76
   2 !   13.4   0.0   2.2e-06    0.0091     150     203 ..     539     594 ..     529     601 .. 0.90
   3 !    8.3   0.0   8.1e-05      0.33      47      79 ..     664     697 ..     651     718 .. 0.80
   4 !   10.0   0.0   2.5e-05       0.1     146     202 ..     779     838 ..     772     845 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00019
   TIGR01262  47 NPqelvPtLkide.gevltqSlAiieyLeetypepa 81 
                  P +++P +++++ ++ + +S Ai++yL+++y + +
  MMETSP1061-20121228|8976_1 420 HPFGKLPCMTDQQgEIGIFESGAILQYLQDNYYDDR 455
                 58899***9988735679**********99998776 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 2.2e-06
   TIGR01262 150 agafcvGdevtladvcLvpqvynAerf..evdlaqyPtlkrieealaelpafqeah 203
                 + af  G++ tladv +++ +  A rf  e dl+ +P + +  +++a+ +a+ ea 
  MMETSP1061-20121228|8976_1 539 SSAFLLGNQFTLADVAVASYLLFALRFfpETDLSIWPNIVAYLSTCASRQAYGEAF 594
                 678***********************97789*****************99998875 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 8.1e-05
   TIGR01262  47 NPqelvPtLkide.gevltqSlAiieyLeetype 79 
                  P +++P L++++ ++++ +S Ai++yL ++y+ 
  MMETSP1061-20121228|8976_1 664 HPFGKIPCLTDNNgEIMVFESGAILQYLLDNYQS 697
                 3679*****9988356778********9888765 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 2.5e-05
   TIGR01262 146 lk.ekagafcvGdevtladvcLvpqv.ynAerf.evdlaqyPtlkrieealaelpafqea 202
                 l+ + +  f vGd+ tladv +++ + y  ++f + dla++P l +  + +a  + f++a
  MMETSP1061-20121228|8976_1 779 LQdQFSSIFLVGDKFTLADVSVASYLlYIPQHFpGADLAHWPHLVSYMKDCALRQGFSAA 838
                 44366788**************99762666676589**********99999999999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (944 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.12s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 3461.05
//
Query:       MMETSP1061-20121228|8986_1  [L=1338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       721  (0.175768); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.83u 0.14s 00:00:00.97 Elapsed: 00:00:00.70
# Mc/sec: 2522.88
//
Query:       MMETSP1061-20121228|8981_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-16   56.9   0.3      1e-07   29.2   0.0    2.8  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    5.7e-15   52.8   0.0      3e-10   37.2   0.0    2.2  2  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
    1.3e-09   35.4   0.7    7.6e-06   23.1   0.1    2.6  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    8.4e-07   26.0   0.1     0.0013   15.4   0.0    2.3  2  TIGR01373 soxB: sarcosine oxidase, beta subunit family
    1.1e-05   22.3   0.3    3.3e-05   20.7   0.1    1.7  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    1.2e-05   22.1   0.1    2.6e-05   21.0   0.1    1.4  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    1.7e-05   21.4   0.0      3e-05   20.6   0.0    1.3  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
      2e-05   21.4   0.1    0.00022   18.0   0.1    2.2  2  TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase
      4e-05   20.3   0.3      0.026   11.0   0.0    2.1  2  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00041   17.5   0.5      0.001   16.2   0.2    1.7  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0025   14.8   0.0     0.0036   14.2   0.0    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0042   13.5   0.2       0.77    6.0   0.0    2.1  2  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
     0.0046   14.5   1.4      0.034   11.7   0.2    2.1  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
  ------ inclusion threshold ------
      0.015   11.7   0.1      0.065    9.6   0.0    1.8  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
      0.016   11.9   0.1      0.022   11.5   0.1    1.1  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
      0.026   11.5   0.3       0.22    8.5   0.1    2.0  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
       0.03   10.4   0.2      0.043    9.9   0.1    1.1  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
      0.034   12.2   0.0      0.095   10.7   0.0    1.7  1  TIGR01997 sufA_proteo: FeS assembly scaffold SufA
      0.041   11.0   0.1      0.086    9.9   0.1    1.5  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      0.059   10.3   0.2      0.084    9.8   0.2    1.2  1  TIGR01790 carotene-cycl: lycopene cyclase family protein


Domain annotation for each model (and alignments):
>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.1   1.5e-08   3.1e-06       1      75 [.      40     114 ..      40     126 .. 0.77
   2 !   29.2   0.0   4.9e-10     1e-07     194     350 ..     231     412 ..     208     413 .. 0.62

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.5e-08
   TIGR02352   1 vlviGgGviGlsvAveLakrg...hkvtllekdevgsgAskaAaGmLapvaEveiaeeallrLaleSlrlypelleel 75 
                 ++v+GgG+ G svA++La++     k+t+le +e +s+As+ ++G +a       +  +   L + + ++y++l++ l
  MMETSP1061-20121228|8981_1  40 IVVVGGGIQGTSVAYQLAQKAtspLKITILEAKEPASAASGKGGGFMARSWG---DGSPTQGLHHLAFDMYEDLAKTL 114
                 68****************98722258*******99**********9985432...33455555555666777666665 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 4.9e-10
   TIGR02352 194 vqadqvvlaaGawakellp........lalrpvkgeilrlevpa..ekllnrpv..ravvyqrqvYivPredgrlvv...GAtseesgfdttvtlegvkeLledaievlPa....lkea........elletwaGlRPatpDnlPllgeheederlliatGhyRnGiLLaPataevvadliekk 350
                 ++ad vv++aG w+ +  +        l++  vk   +  + p+  e+  + +   +   ++ ++ + Pr dg++ +   G + + ++++   ++++ +e++e++++ + a    +ke+        el +t+a +RP  pD lP++g  +  ++  i++Gh   Gi  aPa ++v+a+li+++
  MMETSP1061-20121228|8981_1 231 LKADAVVVSAGPWSCQAEDwfegsgvrLPMEGVKSTSIVWKQPEgeEVDATALFcgEDYRFNTHLEVYPRPDGTIYIcgiGGSDYITTDE--LKEGAFREVIEANESRVKAasdsFKELstlykakgELDRTQACMRPCPPDALPYMGGIPAYKNAFINAGHNCWGIAWAPACGKVMAELILEG 412
                 566666666666666655555566666666666666666666663222222222122344445555566666665432224444443333..555555555554444332211114443222222226889**************************************************876 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.4e-05    0.0049       3      28 ..      40      65 ..      38     134 .. 0.86
   2 !   37.2   0.0   1.5e-12     3e-10     187     376 ..     231     428 ..     209     432 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.4e-05
   TIGR01377  3 vivvGaGvmGsaaayqLakrgkkvLL 28
                ++vvG G++G++ ayqLa+++ + L 
  MMETSP1061-20121228|8981_1 40 IVVVGGGIQGTSVAYQLAQKATSPLK 65
                79****************99886554 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 1.5e-12
   TIGR01377 187 yqakklvvtaGaWtskL...lkklaielPlqplrinvcywrikeakeekvsqefPaflvlglapyiyglPsleypGLikvayhhG.qqvDPderdrekg.adiedveeLkkfvkdrlpglk......eepkatelCmytktPDedfvlDlhpkyydnvvigaGfsGhGfklapvvGkiLaelamklea.eydlaafslrrfe 376
                  +a+ +vv+aG+W  +     +  ++ lP++ ++ +   w+  e++e + + +  +   +  ++++   P  +  G i ++  +G + +  de + +     ie  e   k   d + +l       +e++ t+ Cm    PD    +   p y +n  i aG    G   ap+ Gk++ael ++++a +++l++f   rf+
  MMETSP1061-20121228|8981_1 231 LKADAVVVSAGPWSCQAedwFEGSGVRLPMEGVKSTSIVWKQPEGEEVDAT-ALFCGEDYRFNTHLEVYPRPD--GTIYICGIGGsDYITTDELKEGAFrEVIEANESRVKAASDSFKELStlykakGELDRTQACMRPCPPDALPYMGGIPAY-KNAFINAGHNCWGIAWAPACGKVMAELILEGKAkSVNLRPFDPARFT 428
                 68999********988622266677***********************999.555667777777777777655..44445544441566777666554424444444444444444444333333339*****************99*****66.********************************989******999986 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   3.7e-08   7.6e-06       2      69 ..      40     108 ..      39     121 .. 0.78
   2 !   10.0   0.0   0.00033     0.069     341     375 ..     378     412 ..     370     428 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 3.7e-08
   TIGR03197   2 vavIGaGiAgaalalsLarrG...vqvtllekdeklaqgASgnrqGalypllsaddnalsrfllaaflyar 69 
                 ++v+G+Gi g+++a++La++    +++t+le++ ++a+ ASg   G + ++   d ++ + ++  af + +
  MMETSP1061-20121228|8981_1  40 IVVVGGGIQGTSVAYQLAQKAtspLKITILEAK-EPASAASGKGGGFM-ARSWGDGSPTQGLHHLAFDMYE 108
                 89****************99733368******9.********987755.5556666777777777776655 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00033
   TIGR03197 341 apvlpgLYvllglGSRGllsapLaaelLaaqilge 375
                 +p +++ ++++g+   G+++ap +++++a +il+ 
  MMETSP1061-20121228|8981_1 378 IPAYKNAFINAGHNCWGIAWAPACGKVMAELILEG 412
                 799***************************99875 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0     0.001      0.21      26     105 ..      33     114 ..      25     120 .. 0.73
   2 !   15.4   0.0   6.4e-06    0.0013     331     400 ..     357     428 ..     319     432 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.001
   TIGR01373  26 epkpeydviivGgGGhGlatayylakehG.itnvavlekgwlGgGnvgrntt.ivrsnylydesaelyelalklweGlskdl 105
                   k+  ++++vGgG  G + ay la++     ++++le     +   g+    + rs      ++ l++la+ ++e l k l
  MMETSP1061-20121228|8981_1  33 ASKNMKNIVVVGGGIQGTSVAYQLAQKATsPLKITILEAKEPASAASGKGGGfMARSWGDGSPTQGLHHLAFDMYEDLAKTL 114
                 5688899******************876514688888877777777776654144665555666677777777777777665 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 6.4e-06
   TIGR01373 331 llrswgGivdvspdaspiiaktpl.dnlylncGwgtGGfkatpasGtvfaallakdephdla.apftldrfe 400
                 l r+ + +    pda p ++  p  +n ++n+G    G    pa G+v+a+l+ +++ ++++ +pf+  rf+
  MMETSP1061-20121228|8981_1 357 LDRTQACMRPCPPDALPYMGGIPAyKNAFINAGHNCWGIAWAPACGKVMAELILEGKAKSVNlRPFDPARFT 428
                 556666677778999999999885389*********************************986799999996 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.6e-07   3.3e-05       1      38 [.      39      78 ..      39      90 .. 0.87
   2 ?   -1.4   0.0      0.84   1.7e+02     207     229 ..     255     276 ..     242     289 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.6e-07
   TIGR01988  1 divIvGgGlvGlalAlaLassa..dlkvalveakaaekak 38
                +iv+vGgG+ G+++A +La++a   lk++++eak++ +a+
  MMETSP1061-20121228|8981_1 39 NIVVVGGGIQGTSVAYQLAQKAtsPLKITILEAKEPASAA 78
                69*****************999999********9776544 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.84
   TIGR01988 207 gplAlLPlkd.nrsslVwslspee 229
                 g    LP+++ + +s+Vw  ++ e
  MMETSP1061-20121228|8981_1 255 G--VRLPMEGvKSTSIVWKQPEGE 276
                 3..469****9999****988755 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.3e-07   2.6e-05       1      38 [.      39      78 ..      39      91 .. 0.90
   2 ?   -3.4   0.0       3.5   7.1e+02     208     225 ..     257     274 ..     251     281 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.3e-07
   TIGR01984  1 dviivGgglvGlslAlaLsrks..klkialieaksaeaak 38
                ++++vGgg+ G+s+A  L++k+   lki+++eak++ +a 
  MMETSP1061-20121228|8981_1 39 NIVVVGGGIQGTSVAYQLAQKAtsPLKITILEAKEPASAA 78
                79******************9999**********998874 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3.5
   TIGR01984 208 lLPlkdayrlslvwclkk 225
                  LP++  + +s+vw  ++
  MMETSP1061-20121228|8981_1 257 RLPMEGVKSTSIVWKQPE 274
                 59*****9******8764 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   1.4e-07     3e-05       2      37 ..      37      73 ..      36      78 .. 0.92

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 1.4e-07
   TIGR00562  2 kkkvvvvGgGisGLciayalekerp.dvelvlvEakd 37
                +k++vvvGgGi G ++ay l+++   ++ ++++Eak+
  MMETSP1061-20121228|8981_1 37 MKNIVVVGGGIQGTSVAYQLAQKATsPLKITILEAKE 73
                799*****************9998779*******986 PP

>> TIGR03329  Phn_aa_oxid: putative aminophosphonate oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.1e-06   0.00022      22      73 ..      35      87 ..      25      97 .. 0.83
   2 ?    0.3   0.0      0.24        50     352     393 ..     370     411 ..     342     418 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.1e-06
   TIGR03329 22 dteadvaivGGGftGlwtaillkqae.pkldvlvleadlcGaGasGrnGGcll 73
                ++  ++++vGGG  G   a +l q++   l++++lea    + asG+ GG + 
  MMETSP1061-20121228|8981_1 35 KNMKNIVVVGGGIQGTSVAYQLAQKAtSPLKITILEAKEPASAASGKGGGFMA 87
                456789*************99877651569********************874 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.24
   TIGR03329 352 tGlpffGkleearnvfyGfGysGnGvapsymGGqilsslvlg 393
                 + lp++G +   +n f   G+   G+a +   G++++ l+l+
  MMETSP1061-20121228|8981_1 370 DALPYMGGIPAYKNAFINAGHNCWGIAWAPACGKVMAELILE 411
                 579***********************************9976 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.1    0.0017      0.34       1      60 [.      39     100 ..      39     117 .. 0.77
   2 !   11.0   0.0   0.00013     0.026     145     194 ..     195     246 ..     169     253 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0017
   TIGR01813   1 dvvvvGsGlAGlsaaleakkagla..evvvleKapviGGNsaiaaggmnaaktkiQkkkgie 60 
                 ++vvvG G+ G s a+++ ++ +   ++ +le ++ +   s + +g m+ ++ +    +g++
  MMETSP1061-20121228|8981_1  39 NIVVVGGGIQGTSVAYQLAQKATSplKITILEAKEPASAASGKGGGFMARSWGDGSPTQGLH 100
                 59***************988876422789999999999999999999998876655555554 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 0.00013
   TIGR01813 145 velrlnskvedlikddqgqvtGvkvke..kgkkikikaakaVvlatGGfgsn 194
                 +e++ n++  d   dd+ +vtGvk++   ++++ +i +a+aVv++ G ++ +
  MMETSP1061-20121228|8981_1 195 MEVNENKNENDDDDDDEMTVTGVKYQPrgNDSEEQILKADAVVVSAGPWSCQ 246
                 566666666666789999*******87669999**************99954 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2   4.9e-06     0.001      22      64 ..      38      83 ..      24      89 .. 0.79
   2 ?   -3.2   0.0         4   8.2e+02      18      31 ..     229     242 ..     224     248 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.9e-06
   TIGR00292 22 sDviivGaGpsGLtaayylakeg...lkvvvlerklaiGGGswgGG 64
                 ++++vG+G  G + ay la++    lk+ +le k      s+ GG
  MMETSP1061-20121228|8981_1 38 KNIVVVGGGIQGTSVAYQLAQKAtspLKITILEAKEPASAASGKGG 83
                5799****************998899*******9865555554444 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 4
   TIGR00292  18 dyaesDviivGaGp 31 
                 +++++D ++v aGp
  MMETSP1061-20121228|8981_1 229 QILKADAVVVSAGP 242
                 67889999999998 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.8e-05    0.0036       2      46 ..      39      86 ..      38     120 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.8e-05
   TIGR03364  2 dvvvvGaGivGlahAlaaarrG...lkVtvierssraaGAsvrNFGqv 46
                ++vvvG+Gi G++ A++ a++    lk+t++e ++ a  As +  G++
  MMETSP1061-20121228|8981_1 39 NIVVVGGGIQGTSVAYQLAQKAtspLKITILEAKEPASAASGKGGGFM 86
                69***************9998633478******999999997766665 PP

>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0038      0.77       2      44 ..      40      85 ..      39      89 .. 0.86
   2 !    5.5   0.0    0.0055       1.1     172     208 ..     211     248 ..     202     277 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0038
   TIGR03377  2 vvviGGGatGaGilRDlalRg...lkvvLlekkdlasGttgRnhGL 44
                +vv+GGG  G+ ++  la ++   lk+++le k+ as ++g+  G 
  MMETSP1061-20121228|8981_1 40 IVVVGGGIQGTSVAYQLAQKAtspLKITILEAKEPASAASGKGGGF 85
                8***************998764448999******999999987765 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0055
   TIGR03377 172 gdrvtgvkvedlktgeeee.ieaevvvnaaGaWaqeia 208
                 + +vtgvk +   +++ee+ ++a+ vv +aG W+ +  
  MMETSP1061-20121228|8981_1 211 EMTVTGVKYQPRGNDSEEQiLKADAVVVSAGPWSCQAE 248
                 56899***99988776666269***********87653 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.2   0.00016     0.034       3      32 ..      40      72 ..      38      88 .. 0.80
   2 ?    1.7   0.0      0.18        37     105     155 ..     194     251 ..     184     347 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00016
   TIGR02032  3 vvvvGaGpaGssaAlrlakkG...lrVlllekk 32
                +vvvG+G+ G s+A++la+k    l++ +le k
  MMETSP1061-20121228|8981_1 40 IVVVGGGIQGTSVAYQLAQKAtspLKITILEAK 72
                8*****************997222455566655 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.18
   TIGR02032 105 gaelllettvlsveied....ekvkvevred..ekkevtakivigAdGakskvak.kl 155
                 g+e+ +++   +   +d    + vk + r++  e++ ++a++v+ + G+ s  a+ + 
  MMETSP1061-20121228|8981_1 194 GMEVNENKNENDDDDDDemtvTGVKYQPRGNdsEEQILKADAVVVSAGPWSCQAEdWF 251
                 5666666666665555567665666666666667788999999999999887666444 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0      0.48        99     134     163 ..      30      59 ..      27      65 .. 0.80
   2 ?    9.6   0.0   0.00032     0.065     375     442 ..     221     291 ..     197     303 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.48
   TIGR01318 134 lskvkktgkrvaviGaGpaGlacadvlara 163
                 +s   k+ k++ v+G+G  G + a  la+ 
  MMETSP1061-20121228|8981_1  30 MSAASKNMKNIVVVGGGIQGTSVAYQLAQK 59 
                 677788889999999999999998888765 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00032
   TIGR01318 375 aeivaGseavleadvviiafG.fephamewlaehgikldskGrivaaeese..layqtsnpkifaGGdivr 442
                 ++  +  e++l+ad+v+++ G ++ +a +w++ +g++l  +G  +++ + +     +     +f G d + 
  MMETSP1061-20121228|8981_1 221 PRGNDSEEQILKADAVVVSAGpWSCQAEDWFEGSGVRLPMEGVKSTSIVWKqpEGEEVDATALFCGEDYRF 291
                 55556789********9988857899999*********999988777433300334455566777777665 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00011     0.022       2      40 ..      39      76 ..      38      88 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00011
   TIGR01989  2 DvvivGgGlvGlalAaalkknpslkdkkvllldavdapk 40
                ++v+vGgG+ G+++A  l++ + +  +k+++l+a++  +
  MMETSP1061-20121228|8981_1 39 NIVVVGGGIQGTSVAYQLAQ-KATSPLKITILEAKEPAS 76
                59****************86.57899*******965444 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1    0.0011      0.22     139     170 ..      31      62 ..      18      83 .. 0.78
   2 ?    0.9   0.0      0.22        45     224     263 ..     225     267 ..     191     281 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0011
   TIGR03169 139 akaseetkslavvGgGaagvElalalrkrlkk 170
                  +as+++k+++vvGgG+ g  +a  l+++ ++
  MMETSP1061-20121228|8981_1  31 SAASKNMKNIVVVGGGIQGTSVAYQLAQKATS 62 
                 45678889****************99987654 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.22
   TIGR03169 224 laegetleadavllatg...akapawLaesglsldedGflavk 263
                  +e++ l+adav++++g    +a  w++ sg+ l  +G  +++
  MMETSP1061-20121228|8981_1 225 DSEEQILKADAVVVSAGpwsCQAEDWFEGSGVRLPMEGVKSTS 267
                 45677899******99855469999*******99999976665 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00021     0.043     298     335 ..      31      68 ..      20      78 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00021
   TIGR02440 298 datpaaikkvgvlggglmgggiasvtatkaglpvrikd 335
                  a+++++k+++v+ggg+ g  +a+  a ka  p +i  
  MMETSP1061-20121228|8981_1  31 SAASKNMKNIVVVGGGIQGTSVAYQLAQKATSPLKITI 68 
                 588999***************************99975 PP

>> TIGR01997  sufA_proteo: FeS assembly scaffold SufA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00046     0.095       8      61 ..     165     218 ..     162     221 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00046
   TIGR01997   8 aaatrvrelvkkreeavgirlsvkktGcaGleyalelvsepkeddvllekdGak 61 
                 +a +  +e+v+k  +a+   +sv  + c+G+e + +  ++ ++dd+ +  +G+k
  MMETSP1061-20121228|8981_1 165 TAQITPKEFVEKMLDATSDDISVVLGTCTGMEVNENKNENDDDDDDEMTVTGVK 218
                 567777999*************************************99999987 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00042     0.086       1      31 [.      40      73 ..      40     123 .. 0.78
   2 ?   -2.7   0.0       2.8   5.8e+02     247     267 ..     226     246 ..     212     268 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00042
   TIGR03467  1 vvvvGgGlAGLaAAveLaraG...vrvtllEarr 31
                +vvvGgG+ G + A +La++    +++t+lEa++
  MMETSP1061-20121228|8981_1 40 IVVVGGGIQGTSVAYQLAQKAtspLKITILEAKE 73
                69****************9987778899999864 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.8
   TIGR03467 247 aaeetlaadavvlAvpperaa 267
                 ++e+ l+adavv+ + p++ +
  MMETSP1061-20121228|8981_1 226 SEEQILKADAVVVSAGPWSCQ 246
                 467779999999988777644 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2   0.00041     0.084       2      34 ..      40      75 ..      39      85 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00041
   TIGR01790  2 liviGgGlAglaiAlela...kpglrvqlieaapkl 34
                ++v+GgG  g+ +A +la      l++ ++ea++++
  MMETSP1061-20121228|8981_1 40 IVVVGGGIQGTSVAYQLAqkaTSPLKITILEAKEPA 75
                79***************9766668*******98875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        63  (0.0153584); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.47
# Mc/sec: 1263.73
//
Query:       MMETSP1061-20121228|8988_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1671.86
//
Query:       MMETSP1061-20121228|8984_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1715.86
//
Query:       MMETSP1061-20121228|8990_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 490.25
//
Query:       MMETSP1061-20121228|8992_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|8991_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1060.63
//
Query:       MMETSP1061-20121228|8994_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1979.84
//
Query:       MMETSP1061-20121228|8987_1  [L=1317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1642.9   0.0          0 1642.6   0.0    1.0  1  TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase
   5.7e-104  346.9   0.0    5.7e-90  300.6   0.0    2.3  2  TIGR01739 tegu_FGAM_synt: herpesvirus tegument protein/v-FGAM-synthase
    1.5e-66  222.6   0.0    3.8e-65  218.0   0.0    2.5  1  TIGR01857 FGAM-synthase: phosphoribosylformylglycinamidine synthase
    2.6e-64  215.6   0.0    1.4e-62  209.9   0.0    2.1  2  TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II
    5.2e-38  128.5   0.0    8.2e-38  127.8   0.0    1.2  1  TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
    3.2e-06   24.2   0.2    4.4e-05   20.5   0.1    2.2  2  TIGR03267 methan_mark_2: putative methanogenesis marker protein 2
    0.00028   17.9   0.1    0.00064   16.7   0.1    1.5  1  TIGR04049 AIR_rel_sll0787: AIR synthase-related protein, sll0787 family
  ------ inclusion threshold ------
      0.031   12.3   0.8       0.05   11.7   0.0    1.7  2  TIGR02286 PaaD: phenylacetic acid degradation protein PaaD


Domain annotation for each model (and alignments):
>> TIGR01735  FGAM_synt: phosphoribosylformylglycinamidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1642.6   0.0         0         0      24    1306 ..      35    1313 ..      16    1314 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1642.6 bits;  conditional E-value: 0
   TIGR01735   24 vleltkveaellyfvelkselkadeeeklklllklesvlee......eealer............lllvtPrlgtispwsskatdiaracGlakvdriergiryllegkeelseeelkelaallhDrmtesvleeeeeaaelfsvpeplkletvdvleeGrkaLekantelGLaldedeldylvkrf.eelkrnPsdvelfmlaqansehcrhkifnadliidgkkqdksLfemikstfea.trentvvaykDnssvieGkkverlrPdaatrveyraeeeddvhillkvethnfPtaiaPfpGaatGaGGeirDegatGrGakpkagltGfsvsnLkipgleqPWeds.fqkperlasaLdilieaplGaaafnnefGrPallGyfrtfelkvdlpdeevreylkPimlagGlGsieaehikkeeievGakliklGGpamliGlGGGaassmvsGksdadLDfasvqrdnpemerrlqevidrCvelgeknPiisihDvGaGGlsnalkelvndaerGavidlrkvplddkglspLeiWcnesqeryvlsvkaedleilkaicerercpfavvGtatederliladdtevaktskedapslfenkpvDlelevllGkaPkktrkvkrkapakeplkiaegldlkealervLrlPavaskrfLitigDrsvgGlvardqmvGplqiplaDvavvaasfeeytGealalGerpvlaLldakasarlavgeaitnlvaakvtdlsdvklsanWmaaakleGedaalydavkavselcaaLgiaipvGkDslsmkarwqdgekksvkaPvsLvisafapvaDvrktvtPdLkldkeeseLllvdLgkGkkrlGgsalaqvfaqlgeeapDlddverLkaffaviqalvaedlllayhDrsDGGlvttllemafagncGlevdldalaesllevLfneelGaviqvaeedlaevleklkaagltalvleigtetaeaeieikvnget.llseklseLrdiWeetsfqlqrLrdnpeCaeeekealkereepglklklsfdvaediaapfinkGvkPkvailreqGvngdiemaaaferaGfeaiDvhmsDllaGrveLdefkglvavGGfsYgDvLgagkGWaksilfneklrdqfaaffkrpdtlaLGvCnGCqllsnLaelipGtenwpk.....fvrnkserfearvalvkvkespsillkgmeGsrlpvavahGeGrakfeseealaeleasglvalryvdddgkvteaYPlnpnGspeGiagitsaDGrvlilmPhPervfravqlsWkPeewde..dtpWlrlfrnarkw 1306
                    ++t v  e +++v+l  + + ++e+k +l + l +++e+      +    +             ++ +Pr++++s++ss+at+i++acG++ v r+e ++ry+++   ++se  +kel+++lhDrmte  +++  ++++   +  p+ +etv++++eGr+aLe++n e GL +d+ +ldy+++ f e+l r+P+dve f++ q+nseh+rh++f ++++idg+++d  Lf+m+kst  +  ++n+++a+ Dnss i+G + e lrP ++t++  ++  ++++h +l++ethnfP+++aPf+Ga+tG+GG++rD+ atGrGa p+ag++ ++v+nL+ipg++ PWed+ f +p++la++Ldi i a+ Ga++++n++G+P++ G++r+f+++  lp++e+ e+ kPim+++G+G+++++  +k+e+e+G++++k+GGp ++iG+GGGaass v+ +++adLDf +vqr+++eme+r+++ +++C +lg++nPiis+hD+GaGG++n+lkelv++   Ga +d+rkv+++d++ls+LeiW++e+qe++ l+++ e++e++++++ere cp+a++G++t+d+r++++d             s+  ++pvDl+le +lGk+P+kt++ +++ +  eplk++e+ ++++al rvLrl +v skrfL+ ++Drsv+Gl a++q+vGplq+pla+v v+a ++  +tG a+a Ge+p+++L+d++a+ar++v+ea+tn+v+ak+++++d+k+s+nWm+aakl+Ge+a++ da+ a+ + + +Lgi i++GkDslsm+a   d   ++ kaP+ L ++ +++++D++ktvtPdLk +   s+Ll++dLg GkkrlGgsala v++qlg+e++Dl+d  +Lk++ +v+q+l++++ +la+hDrsDGGl ttl+emafagnc ++v++++ + s++++Lfnee G+vi+vae+d+ ++++ ++ a +   + eigt +a ++i+i v+++t  +++k++ Lrd+We t f+l++ ++np+C+ +e+e+lk+r++p++kl+++++ ++d  +      +k kvai+r +G+ngd+em  af  aGf+a+Dvh++Dll G v+L++f+g+v+vGGfs++DvL++gkGWa  i+fne + +qf++f++rpdt++LGvCnGCql++ L+++ip ++  p+     +++n+s++fe+r+++v + esp+i++kgmeGs+l+v+vahGeGr  f +e +++++++++ ++lryv+d +++te+YP+npnGsp Gia+++s DGr+l++mPhPervf ++q++W+P+ew++   +pWl++f+nar++
  MMETSP1061-20121228|8987_1   35 ADKITDVDRESCFNVQLSIDGDLESEQKDRLEWLLAETFEKdhlkleK----SffdeespsgkiwQVEFGPRMTFTSAFSSNATSICKACGVP-VGRLELSRRYRFHLSDDISETAIKELKKMLHDRMTEEEYDKPLTTFDNGAK--PVPVETVPIMKEGRAALERINAEKGLGFDDFDLDYYTTLFkEKLGRDPTDVECFDMGQSNSEHSRHWFFGGKMVIDGEEKDDTLFQMVKSTLPKdVPNNSIIAFHDNSSSIQGYECESLRPSSTTQAGSVKVGKQTLHPILTAETHNFPSGVAPFAGAETGTGGRLRDVMATGRGAYPVAGISSYCVGNLQIPGYDLPWEDKsFVYPSNLAAPLDIEIKASDGASDYGNKYGEPVIHGFTRSFGQR--LPNGERFEWVKPIMFSAGIGQMDSRFSEKGEPEKGMLVVKIGGPCYRIGIGGGAASSRVQSSENADLDFDAVQRGDAEMENRMNRLMRACCDLGDDNPIISVHDQGAGGNGNILKELVEP--IGASYDIRKVNIGDDTLSVLEIWGAEYQENNGLLLRPESRELFEKMAERENCPIAILGEVTGDGRVVVHD-------------SQDGSTPVDLPLELVLGKMPQKTFTDNHVKMDLEPLKLPEETTVMDALDRVLRLLSVGSKRFLVHKVDRSVTGLCAQQQCVGPLQLPLANVGVTAHTHFGITGTATACGEQPIKGLIDSAAMARMTVAEAMTNIVWAKMSKIEDIKASGNWMYAAKLPGEGAKMWDACVALRDCMLELGIGIDGGKDSLSMAASCGD---EVTKAPGELTMTCYVTCPDITKTVTPDLKCPASGSKLLFIDLGGGKKRLGGSALATVYSQLGNESADLEDFATLKKAMEVTQDLIDKRMILAGHDRSDGGLATTLVEMAFAGNCSIDVTIPSSTGSDIDTLFNEEAGLVIEVAESDVVSIMKAYSGASVP--IEEIGTVSAGDSIKIAVGSSTpCIESKMTVLRDVWEATGFKLEHRQRNPKCVIQEEEGLKSRQAPQWKLTYEPKPTDDSVMKS---ETKHKVAIIRQEGSNGDREMISAFLTAGFDAWDVHVKDLLDGTVTLEQFRGIVFVGGFSFADVLDSGKGWAGVIKFNESVYKQFQDFRNRPDTFSLGVCNGCQLMA-LLGWIPEQKGLPEdrqprLLHNESGKFESRFSSVAIDESPAIMFKGMEGSSLGVWVAHGEGRFFFPDESVHDAVKKNNQIPLRYVNDTNEPTEEYPFNPNGSPGGIAALCSEDGRHLAMMPHPERVFTTWQWPWTPSEWKDleVGPWLQMFQNAREF 1313
                  567788999**********9999999********99999995544441....155567777777667789**********************9.******************************************999876665..555669**********************************778************************************************96516899*********************************9999*****************************************************************99*******************************************..899*********************************************************************************************************************..**********************************************************************.............677789**********************************************************************************************************************************************************************************************9...99********************************************************************************************************************************************************998876..667888888999999998766378999**************************************************998877...89********************************************************************************************************.******998777666777*************************************************************************************************************************986456**********85 PP

>> TIGR01739  tegu_FGAM_synt: herpesvirus tegument protein/v-FGAM-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   2.3e-15   1.2e-12     418     550 ..     580     706 ..     565     711 .. 0.85
   2 !  300.6   0.0   1.1e-92   5.7e-90     593    1201 ..     710    1311 ..     703    1314 .. 0.88

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 2.3e-15
   TIGR01739 418 leaLkrlcrlagcqvkvlGklveekglhivsdlfeevptaatldktsatpkspelplssepvsreepvkleeslewatlnlesllekiLshPtVgsKefivrHiDRvgnGrvaqqqGvGPlDlPvsDYslvll 550
                  e ++++++  +c++ +lG+++   g  +v d  +  +t ++l  +    k+p++       +++  ++le+    ++  + + l  +L+  +VgsK f+v+ +DR   G+ aqqq vGPl+lP++   + ++
  MMETSP1061-20121228|8987_1 580 RELFEKMAERENCPIAILGEVT-GDGRVVVHDSQDG-STPVDLPLELVLGKMPQKTF----TDNHVKMDLEPLKLPEETTVMDALDRVLRLLSVGSKRFLVHKVDRSVTGLCAQQQCVGPLQLPLANVGVTAH 706
                 57899***************76.5688899998877.69999999999999999998....566666777765444555599*******************************************98777777 PP

  == domain 2    score: 300.6 bits;  conditional E-value: 1.1e-92
   TIGR01739  593 alsgvcsalGEqaykvqldpkrGalyaltEaLlNlslsPvatledviitlsvtwsseds.vkselkealrackdfceelgvsf.....tvtsaassktqssrsapfksivfsasapvklsakkitPdlk..kkgslLiwlsleq.kltlaGsifeqileksateelselspeslkkllkalqelvkegvivSgHDvSDGGLvacvaEmalaGekgvkitlP.eitkplefLlsetPGvviEVepeslkevlqkleseglvaaviGrVaeegesstfsvvhnstkllkesLsslqatWrsfsseelellrseleekelhkldyglnevdlgslekglklspl.rlvtapderkrVavlllPGqskpesllaaltnaGFdprivsitelkktdlsldtvvGliivgasgtldsevgaralaaallrnkaflraLlkflnrpdtFslgiGelgvqlLlalkivglkqsspvisvetevkepvaLeknaSglyeSrWlniyiPettksvflrplkgsvlPcWaqGthLGlsfksdgveeeleesgqiaatFhgksassglpAtnYPrnPsgg.snvAglCSeDGRhlalliDPslsfflwqWqyvpeeneelqvsPWklmFqqll 1201
                   + g+++a GEq++k  +d  + a+  ++Ea++N++ + ++++ed+   +   +  +   + +++ +a  a +d   elg+ +     ++++aas   + ++        ++  +++++  k +tPdlk    gs L+++ l   k+ l+Gs  ++++++  +e +   +  +lkk ++++q+l+ +++i+ gHD SDGGL ++++Ema aG+ ++ +t+P +    ++ L+ e  G+viEV ++ +  + ++ + +++ ++ iG+V+  g+s  + v + st  ++ +++ l+ +W+ +     +l   ++++k + + + gl+  ++++ +   + +p   +v +++ +++Va++   G++ +  +++a+  aGFd   v+++ l + +++l++++G+++vg     d   +++++a  ++ n+ + ++ + f nrpdtFslg+ + g+ql++ l+ +  +++ p     ++ +  ++L  n Sg++eSr +++ i e + +++++ ++gs l  W+      + f++++v +  ++++qi +++     +++    +YP nP+g    +A+lCSeDGRhla++  P   f  wqW++ p+e+++l+v PW +mFq+++
  MMETSP1061-20121228|8987_1  710 GITGTATACGEQPIKGLIDSAAMARMTVAEAMTNIVWAKMSKIEDIKASGNWMYAAKLPgEGAKMWDACVALRDCMLELGIGIdggkdSLSMAASCGDEVTKAP--GELTMTCYVTCPDITKTVTPDLKcpASGSKLLFIDLGGgKKRLGGSALATVYSQLGNESADLEDFATLKKAMEVTQDLIDKRMILAGHDRSDGGLATTLVEMAFAGNCSIDVTIPsSTGSDIDTLFNEEAGLVIEVAESDVVSIMKAYSGASVPIEEIGTVSA-GDSIKIAVGS-STPCIESKMTVLRDVWEATG---FKLEHRQRNPKCVIQEEEGLKSRQAPQWKLTYEPKPTdDSVMKSETKHKVAIIRQEGSNGDREMISAFLTAGFDAWDVHVKDLLDGTVTLEQFRGIVFVGGFSFADVLDSGKGWAGVIKFNESVYKQFQDFRNRPDTFSLGVCN-GCQLMALLGWIPEQKGLP-----EDRQ--PRLLHNESGKFESRFSSVAIDE-SPAIMFKGMEGSSLGVWVAHGEGRFFFPDESVHDAVKKNNQIPLRYVNDTNEPT---EEYPFNPNGSpGGIAALCSEDGRHLAMMPHPERVFTTWQWPWTPSEWKDLEVGPWLQMFQNAR 1311
                  56899****************************************86655544444444234566777777799999****99333334566666655444444..4778888999999**********444799*******7527889*********99998666656789*************************************************888899****************************************99.9999999865.6788999**********988...444445555544567777888888888776666555524666778889**********************************************************************************************87.*********999988888.....4444..67999*****************.******************99999***********************87665555...99*******8468***********************************************875 PP

>> TIGR01857  FGAM-synthase: phosphoribosylformylglycinamidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.0   0.0   7.4e-68   3.8e-65     117    1215 ..     135    1282 ..      49    1286 .. 0.76

  Alignments for each domain:
  == domain 1    score: 218.0 bits;  conditional E-value: 7.4e-68
   TIGR01857  117 lilekdlddeelekikkylinPvesrekdlevkkakeelleedkevetlagfeeldeedlkkfkaekglameledlkfiqdyfkei.grePteteikvldtywsdhcrhttfetelkevtiedskfskqlkkayedylalreelgreekevslmdlativakylkkeG.klddlevseeinacsvevevevddveeewlllfknethnhPteiePfGGaatclGGairdPls.Gr.........syvyqalrvtGaadptvevsetlkGklpq.rkitttaaaGyssyGnqiG..latgqvseiyhpgyvakrme......vGavvaatPkenvvrekPakgdviillGGktGrdGiGGatGsskehteeslelaGaevqkGnapeerkiqrlfrn....kevtrlikkcndfGaGGvsvaiGelad..GlevdlnkvPkkyeGldGtelaisesqermavvvskedvdkflklaeeenleatvvatvtekdrlvln..wkgktivdlsrefldtnGvkkeidvkvkdkevklsvektkv.seetleeellkvlkdlnvasqkGlverfdssvGagtvlaPlGGkyqltPteasvaklPvlggetktasviayGfnPyiaewspyhgaiyavveslaklvaaGv.dykkarlsfq.eyfeklekdeekwgkPvaallGalkaqvdlglaaiGGkdsms..Gsf.eeldvPPt.l.isfavavanvkkvispefk..kvdekivlie.........gkal.........ed.ltldkdelkenfekleelikdkkvvsasavkyGgvaealakmslGnr..iGaelnnkev...edlftlklgslilevke..........elelanvkkiGettkdfvlkveg.eeldleeleeayeekleevfpskledkketvevlakase................kkvvka.kekvekPrvvipvfPGtnseydsakafekeGaevklvilrnltkealvesvealvdeidksqilllpGGfsagdePdGsakfiaailrnpkvkeavkkllkr.dGlilGicnGfqalvklGllPyGeivdveeasptltynkinrhvsklvrtkiaskksPwls.evsvGeihaipvshGeGrfvasdevlke.lvengqiatqyvdlegeaamdlkynPnGsslaieGiiskdGrilGkmGhsery 1215
                  + l +d++++ ++++kk l + +   e d  ++   +     +  vet+  ++e    +l++++aekgl  +  dl +    fke+ gr+Pt  e   +    s+h rh  f+ ++    i+  + +++l      +  ++  l ++  + s++ +          +G + + l  s    a sv+v  +          ++  ethn P+ + Pf Ga t  GG +rd ++ Gr         sy    l++ G   p ++ s      l     i   a+ G s yGn+ G  +  g  + +        r e        a ++        + +P+kg  ++ +GG   r GiGG + ss++++ e  +l+   vq+G+a  e ++ rl+r     ++  + i    d GaGG    + el++  G + d+ kv +  + l   e+  +e qe   + +++e  + f k+ae+en   +++++vt + r+v++   +g t vdl  e++     +k+ +    d++vk+  e+ k+ +e+t+ + l +vl+ l v s++ lv++ d sv +    +   G  ql  +++ v+    +g    t ++ a G  P  +  ++  +a ++v e+++++v a + + + ++ s    y  kl  +  k+    +al  ++   ++lg++  GGkds+s   s  +e++  P  l ++  v+  +++k ++p++k  + ++k+++i+         g al         e+    d+ +lk+ +e+ ++li+++ +++      Gg+a +l+ m++     i +++  ++    ++lf  + ++l++ev+e              + +++iG++ +   +k++   +    e + +    + e    kle+++   + +++++e                k +  + +++  k +v i    G+n + ++  af  +G ++  v +++l + +++         +++ + +++ GGfs +d  d    +   i  n+ v ++ +++ +r d + lG+cnG q +  lG +P  +  + e+  p l +n+ ++  s++    +a ++sP +  +   G    + v+hGeGrf+ +de +++ +++n+qi  +yv+ + e++ ++++nPnGs   i  + s+dGr l  m h er+
  MMETSP1061-20121228|8987_1  135 FHLSDDISETAIKELKKMLHDRMTEEEYDKPLTTFDNGAK--PVPVETVPIMKE-GRAALERINAEKGLGFDDFDLDYYTTLFKEKlGRDPTDVECFDMGQSNSEHSRHWFFGGKM---VIDGEEKDDTL------FQMVKSTLPKDVPNNSIIAFHDNS---SSIQGyECESLRPSSTTQAGSVKVGKQ------TLHPILTAETHNFPSGVAPFAGAETGTGGRLRDVMAtGRgaypvagisSYCVGNLQIPGYDLPWEDKSFVYPSNLAApLDIEIKASDGASDYGNKYGepVIHGFTRSFGQRLPNGERFEwvkpimFSAGIGQMDSRFSEKGEPEKGMLVVKIGGPCYRIGIGGGAASSRVQSSENADLDFDAVQRGDAEMENRMNRLMRAccdlGD-DNPIISVHDQGAGGNGNILKELVEpiGASYDIRKVNIGDDTLSVLEIWGAEYQENNGLLLRPESRELFEKMAERENCPIAILGEVTGDGRVVVHdsQDGSTPVDLPLELVLGKMPQKTFT----DNHVKMDLEPLKLpEETTVMDALDRVLRLLSVGSKRFLVHKVDRSVTGLCAQQQCVGPLQLPLANVGVTAHTHFG-I--TGTATACGEQPIKGLIDSAAMARMTVAEAMTNIVWAKMsKIEDIKASGNwMYAAKLPGEGAKMWDACVALRDCM---LELGIGIDGGKDSLSmaASCgDEVTKAPGeLtMTCYVTCPDITKTVTPDLKcpASGSKLLFIDlgggkkrlgGSALatvysqlgnESaDLEDFATLKKAMEVTQDLIDKRMILAGHDRSDGGLATTLVEMAFAGNcsIDVTIPSSTGsdiDTLF-NEEAGLVIEVAEsdvvsimkaySGASVPIEEIGTVSAGDSIKIAVgSSTPCIESKMTVLRDVWEATGFKLEHRQRNPKCVIQEEEglksrqapqwkltyepKPTDDSvMKSETKHKVAIIRQEGSNGDREMISAFLTAGFDAWDVHVKDLLDGTVT---------LEQFRGIVFVGGFSFADVLDSGKGWAGVIKFNESVYKQFQDFRNRpDTFSLGVCNGCQLMALLGWIPEQKGLP-EDRQPRLLHNESGKFESRFSS--VAIDESPAIMfKGMEGSSLGVWVAHGEGRFFFPDESVHDaVKKNNQIPLRYVNDTNEPTEEYPFNPNGSPGGIAALCSEDGRHLAMMPHPERV 1282
                  4578999999999999999888877777775555554444..445666665554.5678************************98549*************************975...45553333333......445566666665555554443332...233331578999*********998533......34456789*************************6532443333333347889999999999999999999999997625799*************9955455555555443334444442111116778888888888899**********************************************************7322223.34577899**************9845668899*************************************************************833467899***999877665555443....33444455555551567888999999**********************999***********9*99999888887.4..555567899************************977651567777765426999**999999888888887665...79**********9762244426787766514234569999*********99555677887775333222221222211111111122234578899***********************************96541266666554432215555.56789*******99999887554456678999999988888876433333333333333333333334555554444444444445555678888888888444333034446899*******************************999877764.........567778999**********966666666667*************64999******************887554.8899**************976..5556677544144459999**************9988762678************************************************96 PP

>> TIGR01736  FGAM_synth_II: phosphoribosylformylglycinamidine synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.4   0.0    0.0077       3.9       8      33 ..     213     238 ..     207     246 .. 0.90
   2 !  209.9   0.0   2.7e-65   1.4e-62      58     712 ..     299    1004 ..     289    1008 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0077
   TIGR01736   8 lireelGRePnelElallealwsEHc 33 
                 l++e+lGR+P+++E   + +  sEH 
  MMETSP1061-20121228|8987_1 213 LFKEKLGRDPTDVECFDMGQSNSEHS 238
                 5789*********************6 PP

  == domain 2    score: 209.9 bits;  conditional E-value: 2.7e-65
   TIGR01736   58 edAgvvdidde.lavvikvESHNHPSavePynGAATGvGGIvRDvlsm..GArpialldslrfGeldse..................karyllegvvkGiadYGNriGvPtvgGev.eFdesyee...npLVn..vvcvGlvkkdeivksk.akkvgnklvlvgaktgrdGigGatfaSeeLseeaeeedrpavQvgdpftek...llleavleavekglvkaikDlGaaGLtsassEmaakgglGaeieldkvplreegmtpyeillsEsQERmllvvepekveevleilekyeldasvvGevtdekrlrvky..kgevvadlpielladeaPeverpseekkaeee.ekekeeladleeallkllsspniaskewvyeqyDhevqartvvkpge........daavlrikeekkkglaltadanprlvkldpyaGaaaavaeavrnlaavgaePlaivdcLnfgn....PekpevywqlveavkglaeaaralevpvvgGnVSlYNetkekkaiaPtp...vivvvGlvedveklak..selkkegdavvlv..getkdelggSeylkvvhgkesgkvpevdleeekkladavleaikegkvsaahdvseGGlavalaemavasgiGaevdlselaeeeradellfsEssgrliveveeekaeeave...skelkakvlG.ktggeklkikake..eevsvsvkelkeayee 712 
                  ++Ag v+++++ l  ++  E HN PS v P+ GA TG GG +RDv++   GA p+a + s  +G+l+ +                   +  +  +  +G +dYGN+ G P++ G + +F ++  +      V+   ++ G+ + d+ ++ k   + g  +v +g+   r GigG + +S+  s+e  + d  avQ gd+ +e+    l+ a+ ++ + + + +++D Ga+G +    E+++   +Ga+ ++ kv++ ++ ++ +ei+ +E QE   l ++pe+ e +++++e+ + +++++Gevt ++r++v+   +g++ +dlp+el+  + P+ +   ++ k+  e  k +ee + + +al+++l+   + sk++++++ D +v +   ++           + +v   ++ + +g a +++ +p    +d+ a a ++vaea++n++ +  +   i d    gn     + p    ++ +a+ +l++   +l++ + gG+ Sl    +   +++ +p   +++    + d++k+ +   +  ++g +++ +  g  k+ lggS + +v+++  +++++  d ++ kk++++++++i++ ++ a hd s+GGla +l ema+a +  ++v++ +++     + +lf+E +g l++ev+e++   +++    + ++++++G ++ g+++ki++ +    ++ ++  l++ +e+
  MMETSP1061-20121228|8987_1  299 TQAGSVKVGKQtLHPILTAETHNFPSGVAPFAGAETGTGGRLRDVMATgrGAYPVAGISSYCVGNLQIPgydlpwedksfvypsnlaAPLDIEIKASDGASDYGNKYGEPVIHGFTrSFGQRLPNgerFEWVKpiMFSAGIGQMDSRFSEKgEPEKGMLVVKIGGPCYRIGIGGGAASSRVQSSENADLDFDAVQRGDAEMENrmnRLMRACCDLGDDNPIISVHDQGAGGNGNILKELVE--PIGASYDIRKVNIGDDTLSVLEIWGAEYQENNGLLLRPESRELFEKMAERENCPIAILGEVTGDGRVVVHDsqDGSTPVDLPLELVLGKMPQKTFTDNHVKMDLEpLKLPEE-TTVMDALDRVLRLLSVGSKRFLVHKVDRSVTGLCAQQQCVgplqlplaNVGVTAHTHFGITGTATACGEQPIKGLIDSAAMARMTVAEAMTNIVWA--KMSKIEDIKASGNwmyaAKLPGEGAKMWDACVALRDCMLELGIGIDGGKDSLSMAASCGDEVTKAPgelTMTCYVTCPDITKTVTpdLKCPASGSKLLFIdlGGGKKRLGGSALATVYSQLGNESADLEDFATLKKAMEVTQDLIDKRMILAGHDRSDGGLATTLVEMAFAGNCSIDVTIPSSTG--SDIDTLFNEEAG-LVIEVAESDVVSIMKaysGASVPIEEIGtVSAGDSIKIAVGSstPCIESKMTVLRDVWEA 1004
                  6799999988725568899***************************97337*****************9999***99888877655433444456678****************874698876431112334322456777776655444415577899999**************99999998889999***********9722258********************************9..89******************************************************************9752268899**********9**987666555555440555555.89****************************875544433333337766888888888888999******************************874..555556666666622223456666788899*********************9988887666665553223333344679999988667788999998775338999**************************************************************************98887..5899*****876.7888888888666655558899******88889999999888656788888888888875 PP

>> TIGR01737  FGAM_synth_I: phosphoribosylformylglycinamidine synthase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.8   0.0   1.6e-40   8.2e-38       2     209 ..    1055    1285 ..    1054    1290 .. 0.87

  Alignments for each domain:
  == domain 1    score: 127.8 bits;  conditional E-value: 1.6e-40
   TIGR01737    2 kvavirfpGtncdrdtvkaleklgveaelvwyedke.....ledydavvlpGGFsyGDylRag.....aiaaaspvlkevkelaekG.kpvlGiCnGfqilveagllpG..........allknaslrFisrevklkvenektaftkkykkgevvrlPvahaeGryvvddeele.klesndqivfryvdekGdva..eevnpnGsveniagivneegnvlglmPhPeralek 209 
                  kva+ir +G+n dr+++ a+ ++g +a  v+ +d       le++ ++v+ GGFs+ D l +g      i  +  v k+ +++ ++  +  lG+CnG q+++ +g +p            ll+n+s +F+sr  ++ + ++ +++ k ++    + + vah+eGr++++de+++ ++++n+qi +ryv+++ + +  ++ npnGs   ia+++ e+g+ l++mPhPer++++
  MMETSP1061-20121228|8987_1 1055 KVAIIRQEGSNGDREMISAFLTAGFDAWDVHVKDLLdgtvtLEQFRGIVFVGGFSFADVLDSGkgwagVIKFNESVYKQFQDFRNRPdTFSLGVCNGCQLMALLGWIPEqkglpedrqpRLLHNESGKFESRFSSVAIDESPAIMFKGMEG-SSLGVWVAHGEGRFFFPDESVHdAVKKNNQIPLRYVNDTNEPTeeYPFNPNGSPGGIAALCSEDGRHLAMMPHPERVFTT 1285
                  89*************************99988875312123777****************8652221156666888889999888751567****************98999*****************************9999999876.99**************998876157899*********99998845678****************************9876 PP

>> TIGR03267  methan_mark_2: putative methanogenesis marker protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.063        32     271     322 ..     576     627 ..     492     628 .. 0.71
   2 !   20.5   0.1   8.6e-08   4.4e-05     192     307 ..     876     986 ..     865     992 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.063
   TIGR03267 271 deenvkeikevledveltasvvGeviedkklklsdddekavvfdfkkeiitG 322
                  +e  +   ++ e  +  ++++Gev+ d ++ ++d ++ ++  d+  e ++G
  MMETSP1061-20121228|8987_1 576 RPESRELFEKMAERENCPIAILGEVTGDGRVVVHDSQDGSTPVDLPLELVLG 627
                 44555555667777788899****************9999999998888776 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 8.6e-08
   TIGR03267 192 kepellraqldvlveiaekklvkagkdisnpGliGtlgmlleasrvGaevdlekipkpeevdleswlkvypGsGyvltadeenvkeikevledveltasvvGeviedkklklsddd 307
                  +  +l++ ++v++++ +k+++ ag d s+ Gl  tl  +  a +    +d+  ip + + d+++ +     +G v+ ++e +v  i + ++ + + ++ +G v ++  +k+ ++ 
  MMETSP1061-20121228|8987_1 876 EDFATLKKAMEVTQDLIDKRMILAGHDRSDGGLATTLVEMAFAGNCS--IDV-TIPSSTGSDIDTLFN--EEAGLVIEVAESDVVSIMKAYSGASVPIEEIGTVSAGDSIKIAVGS 986
                 566789*****************************998887776654..554.489999999999875..56899**********************************9998775 PP

>> TIGR04049  AIR_rel_sll0787: AIR synthase-related protein, sll0787 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.3e-06   0.00064     190     304 ..     879     988 ..     870     997 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.3e-06
   TIGR04049 190 erlradlellpelAeagLvdaakDismgGivGtalmllEasgvgaeldldaiprPegvdlerWLtaFpsfGfllavepaeveavlkrfaarglacaaigeitaskevvlkdaees 304
                 ++l++ +e+   l ++ ++ a++D s gG+  t++ ++ a ++ +++   +ip   g d++   +     G ++ v++++v +++k ++   +  ++ig+++a+++++++ ++++
  MMETSP1061-20121228|8987_1 879 ATLKKAMEVTQDLIDKRMILAGHDRSDGGLATTLVEMAFAGNCSIDV---TIPSSTGSDIDTLFN--EEAGLVIEVAESDVVSIMKAYSGASVPIEEIGTVSAGDSIKIAVGSST 988
                 689*******************************9999999988776...589999988886544..578************************************999877766 PP

>> TIGR02286  PaaD: phenylacetic acid degradation protein PaaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.1       5.5   2.8e+03      15      29 ..     730     744 ..     726     745 .. 0.81
   2 ?   11.7   0.0   9.7e-05      0.05      19      77 ..     884     948 ..     869     976 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5.5
   TIGR02286  15 earvaltvredmlng 29 
                  a  ++tv e+m n+
  MMETSP1061-20121228|8987_1 730 AAMARMTVAEAMTNI 744
                 577899***999985 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 9.7e-05
   TIGR02286  19 altvred......mlnghgtahGGllfalADsaFAlacNsageaaVAaevtidflrparagevlv 77 
                 a++v++d       l gh+ + GGl ++l + aFA  c  +      ++  id l   +ag v++
  MMETSP1061-20121228|8987_1 884 AMEVTQDlidkrmILAGHDRSDGGLATTLVEMAFAGNCSIDVTIPSSTGSDIDTLFNEEAGLVIE 948
                 56666662111213579********************9988777777777788777777777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.97u 0.15s 00:00:01.11 Elapsed: 00:00:00.75
# Mc/sec: 2317.73
//
Query:       MMETSP1061-20121228|8997_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2275.67
//
Query:       MMETSP1061-20121228|8996_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       350  (0.0853242); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.34
# Mc/sec: 2538.85
//
Query:       MMETSP1061-20121228|9002_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   14.3   0.0     0.0045   13.9   0.0    1.2  1  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein


Domain annotation for each model (and alignments):
>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.1e-06    0.0045      19      53 ..      77     111 .]      68     111 .] 0.88

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-06
   TIGR03056  19 lvrdeGpaaGPvllllhGagasshsfrklvpllaa 53 
                   +  Gp +G  +ll+hG+   s  +rk + +laa
  MMETSP1061-20121228|9002_1  77 RYQRAGPLDGKPVLLVHGLFVNSDHWRKTIEGLAA 111
                 55789*****999******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 636.99
//
Query:       MMETSP1061-20121228|8999_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.9    6.8  16.5       0.38    9.0   7.8    2.4  2  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   7.8   9.2e-05      0.38      23      42 ..      29      48 ..      16      50 .. 0.64
   2 ?   -0.6   0.1     0.094   3.8e+02      17      38 ..     173     193 ..     162     195 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 9.2e-05
   TIGR03892 23 ssgatstsssSsCsTcscts 42
                s  ++s+sssS+++T+++t+
  MMETSP1061-20121228|8999_1 29 SQLSSSSSSSSTTTTTTTTT 48
                34566666666666666665 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.094
   TIGR03892  17 laevgassgatstsssSsCsTc 38 
                 +++v a s++ ++  ++  +T+
  MMETSP1061-20121228|8999_1 173 KSPVLA-SDSEAEAAAAAVTTT 193
                 667777.666667666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 834.64
//
Query:       MMETSP1061-20121228|9000_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-79  261.7   0.3    1.1e-78  261.4   0.2    1.0  1  TIGR00021 rpiA: ribose 5-phosphate isomerase A


Domain annotation for each model (and alignments):
>> TIGR00021  rpiA: ribose 5-phosphate isomerase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.4   0.2   2.7e-82   1.1e-78       1     217 [.      43     272 ..      43     273 .. 0.94

  Alignments for each domain:
  == domain 1    score: 261.4 bits;  conditional E-value: 2.7e-82
   TIGR00021   1 lkraaaeaaaelvedgmvvGlGtGsTvkylieelgervkkesl.kikgvptSkkteelakelgiplssldevkeldlaiDGADevdeklqliKGgGgallrEKivasaskrfiviaDesKlvkklg.kfplPvevvpfaakavleklek....egleaelrka..ek.....agpvvTdngnyilDvkfekiiedpealeeelksipGvvetGlfidmadkvivgtkdgv 217
                 +k+  ++a+ ++v++gmvvGlGtGsT+++++e++ge +k+++l +i+++ptS +t+e+a++l+ipl +ld++++ld+aiDGADevd++l+l+KGgGgallrEK+v+ ++++fivi+DesKl + lg  fp+Pve+ pf+++++++++++    +g+++ lr++  ++     +++ vTdngnyi+D++fe++i+d+++++e++k++ Gvv++Glf+dm+++vi++ +dg+
  MMETSP1061-20121228|9000_1  43 KKQVGYKAVDDYVRSGMVVGLGTGSTAYFAVERVGELLKSGELkDIVCIPTSVRTKEQAESLDIPLVTLDTHSKLDVAIDGADEVDPDLNLVKGGGGALLREKMVEVMADKFIVIVDESKLCDGLGpGFPVPVEITPFCHEHTMRQVAAlescAGCKPVLRMGssSSnqpdgDEIAVTDNGNYIVDLHFEESIKDARKMAEDIKAVCGVVDHGLFCDMSTAVIIAGSDGI 272
                 588899999*******************************7777**********************************************************************************99*****************8888778899******975321222226789****************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.50
# Mc/sec: 728.58
//
Query:       MMETSP1061-20121228|9001_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1695.86
//
Query:       MMETSP1061-20121228|9010_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|9009_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 1219.76
//
Query:       MMETSP1061-20121228|9011_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1629.56
//
Query:       MMETSP1061-20121228|9013_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1505.88
//
Query:       MMETSP1061-20121228|9015_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 584.52
//
Query:       MMETSP1061-20121228|9016_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|9014_1  [L=1267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-20   70.1   0.4    6.7e-20   69.3   0.3    1.3  1  TIGR00417 speE: spermidine synthase


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.3   1.6e-23   6.7e-20      23     189 ..     455     625 ..     436     651 .. 0.89

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 1.6e-23
   TIGR00417  23 eksefqdvlifeteefGkv.lvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpklsgalddervdlkidDGvkfl....rdtekkfDviivDstdPvGpaetlfekefyelvkkalnedGvivaqsesl 189
                  k+++q++     +e G + + l+++vq+  +  + yhe+ +h +    +n k+v+ +GGGD  +l ev+k+ s e+++  e+D++v++ s ky+ + + ++d+++v+    D  k l    +++   fD +ivD ++ v + +   e + ++ ++  ln +Gv+v+  + +
  MMETSP1061-20121228|9014_1 455 LKTHYQQLNFAFGKENGDIcMDLEDTVQICSTYRPHYHEFSSHFAARFVDNVKRVVFVGGGDSMMLHEVLKYPSLEKVVGLELDQTVVRKSFKYFHT-QPHFDNDKVEWWFGDATKSLlllpKEYWGSFDLVIVDLSETVMAFSVTEELDVFDALALLLNAEGVMVKNEHYM 625
                 5899****99999999987366************************************************************************976.579*************998844445667899***********9988888999***************9876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.52u 0.16s 00:00:00.68 Elapsed: 00:00:00.50
# Mc/sec: 3344.60
//
Query:       MMETSP1061-20121228|9017_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.2   0.1      0.059   10.6   0.0    1.9  2  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family


Domain annotation for each model (and alignments):
>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.12   5.1e+02     183     214 ..     130     161 ..     125     168 .. 0.77
   2 ?   10.6   0.0   1.4e-05     0.059      47      95 ..     289     337 ..     247     369 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.12
   TIGR01459 183 feelGGkviyvGkPypaifdkalkeleerekr 214
                  +e+     + G  y  if+  +k +++++k+
  MMETSP1061-20121228|9017_1 130 TNEERSAAWFCGSEYRTIFRNNMKIIQNIGKK 161
                 55555566678999999999999999998876 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 1.4e-05
   TIGR01459  47 snssksvaeleatlkklGiaadlfegivssGevavrsidelkksaelrr 95 
                 s + k+ +++  +lk+lG+  + +e+   sGe+  + i+e++++a+l+ 
  MMETSP1061-20121228|9017_1 289 SKTKKKKKKIFPRLKSLGFSYSNHENKEFSGEIGEKEIQEMAATAKLKF 337
                 4445555666679********************************9974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       461  (0.112384); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1926.22
//
Query:       MMETSP1061-20121228|9024_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 634.40
//
Query:       MMETSP1061-20121228|9028_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|9026_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-24   84.4   0.0    1.4e-24   83.9   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.8e-11   40.1   0.1    8.7e-11   39.5   0.1    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   6.8e-28   1.4e-24       2     185 ..     120     299 ..     119     351 .. 0.90

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 6.8e-28
   TIGR03903   2 tghkvaikllRedaa.eeer.lvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadvesh....akvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtG 185
                 tg++ a k++ ++   e+ +  +  F+ ei++  +L hP i++LlD   +e+  +F v e++eG  l + + ++G+L+  e + ++ +v  a+   h++ +vhRDLkP+n+++  + + ++     k++DFG++  +++           ++ +lG+  Y aPe L     t + D +a G+iv+  L G
  MMETSP1061-20121228|9026_1 120 TGAHYACKIIDKQMIeERFHgMMEQFHTEIEALRALDHPSIIQLLDVFISEE-KIFIVMELMEGGELFDYVVQKGTLTEDEASDIVRKVTSAMVYMHSQNIVHRDLKPENLLLRRKPNGPQdsvdVKIIDFGLSKCMTEP---------VAQSFLGTRGYLAPEMLQRRDYTKAVDTWALGVIVFVLLCG 299
                 8889999999988874555535789**********************99988.9***********************************************************99866554222279******9876544.........44789*****************************9988777 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.1   4.2e-14   8.7e-11      29     141 ..     123     257 ..      89     263 .. 0.76

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 4.2e-14
   TIGR03724  29 sYrhpelDeklrkeRtr.......kEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk........ddklyliDfGLgkkske 141
                 +Y  + +D+++ +eR         +E+ +l+++ + ++   + +++ +e+  ivme +eg +l d++ +k +       +++++v  ++  +H+++ivh Dl ++N++++        + ++ +iDfGL+k   e
  MMETSP1061-20121228|9026_1 123 HYACKIIDKQMIEERFHgmmeqfhTEIEALRALDHPSIIQLLDVFISEEKIFIVMELMEGGELFDYVVQKGTltedeasDIVRKVTSAMVYMHSQNIVHRDLKPENLLLRrkpngpqdSVDVKIIDFGLSKCMTE 257
                 5666777777777775322111114444444444444444444567889999********9999988887767899999******************************87888887667899*******97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1896.24
//
Query:       MMETSP1061-20121228|9022_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-117  390.7   0.1   1.2e-117  390.4   0.1    1.1  1  TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
    8.1e-96  318.5   0.4    9.6e-96  318.3   0.3    1.0  1  TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
    3.2e-42  142.6   0.3    4.3e-42  142.2   0.2    1.1  1  TIGR00511 ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
     0.0038   14.5   0.0      0.018   12.2   0.0    2.0  2  TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit


Domain annotation for each model (and alignments):
>> TIGR00512  salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  390.4   0.1  1.2e-120  1.2e-117       8     334 ..      31     371 ..      19     372 .. 0.91

  Alignments for each domain:
  == domain 1    score: 390.4 bits;  conditional E-value: 1.2e-120
   TIGR00512   8 ekleildqrlLPaeeeyievktvedvaeaikklkVRGAPaigivaayglalaakek.........eaeekeelkkkleeklellkesRPtAvnlswalerlkealee........aatekelkealleeaeeileedleanrkigelgaellkkkaakkekltvLthCNtGslAtagyGtAlgvirsakekgllehvyadEtRPlnqGarLtawElvkegipa.tliaDsmaaallkegevdavivGaDRiaanGDtaNKiGtyqlavlakahgvpflvaaplstiDlelksGeeiviEeRdeeEvtkvsgvriaakgievynpaFDvtPaelitaiitekGvve 334
                  kl++ldq+l+P+e+ yi+v +v  ++++ik++++RGAP+i+iva +gl + ++++          a+++++l + ++ek+++lk+sRPtAvnl++al +++e ++e        + ++k l +a+l   e +le d+++n++ig++gae + kk+  k+k++++t+CNtGslAtagyGtAlgv rs++e g+le + a EtRP+nqG+rLta+E+++e++p  +li+Ds a+al+++++vda +vGaDR++anGDtaNKiGty+l+++a  h++pf+vaap++++D++l+sG++i+iEeR++eE+ ++s    a++g+ ++npaFDvtP  +i++iitekGv+e
  MMETSP1061-20121228|9022_1  31 PKLQVLDQLLIPHEKVYIDVPDVVMAYTVIKTMQIRGAPLIAIVALLGLSVDMHTNaktieeldkLASDADSLLAWIREKMAYLKSSRPTAVNLTNALIEVEEKMKEalesnsgeDDKKKVLCKAVLDYSEFMLERDVSDNKAIGKFGAEAILKKT-GKDKINLVTICNTGSLATAGYGTALGVARSLQEMGKLESISALETRPYNQGSRLTAFEIMEEKMPGgQLICDSSAGALMQTKNVDACVVGADRVCANGDTANKIGTYNLSIIAAFHKIPFYVAAPITSLDITLDSGKSIPIEERSSEELISTS---KAPSGMPCWNPAFDVTPDCNISGIITEKGVIE 371
                 58************************************************988766321111111234455567789*********************98877777777778886666777889999999***********************999.7899************************************************************9549*********************************************************************************9876...79****************************97 PP

>> TIGR00524  eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.3   0.3   9.4e-99   9.6e-96       7     303 .]      56     372 ..      50     372 .. 0.89

  Alignments for each domain:
  == domain 1    score: 318.3 bits;  conditional E-value: 9.4e-99
   TIGR00524   7 vaeaikslevRGApaigvaaalglalaakkikt.........vnveefkeklekaadvllssRPtAvnLsnalervlkalks...sedveevke.....slleeaeelieedletnrkiGengakl.....ikdgdtvlthCnaGslatsdygtAlgvirsawedgkeirvialEtRPrlqGsrLtayelveegidv.tlitDsavaylikkseidavivGADrivrngdvanKiGtlqlaviakefripFfvaApkstfdtktetGediiiEERdpeEvavvegvriaplevkvynpAFDitPaelidaiitEkGvitp 303
                 ++++ik++++RGAp i+++a lgl    ++  +          + +++   +++++ +l+ssRPtAvnL+nal +v + +k+   s++ e+ k+      +l++ e + e d++ n++iG++ga+       kd+  ++t+Cn+Gslat++ygtAlgv rs+ e gk   + alEtRP++qGsrLta+e++ee+++  +li Ds+++ l++++++da +vGADr+ +ngd+anKiGt++l++ia  ++ipF+vaAp + +d + + G+ i+iEER+ eE++ +     ap+++ ++npAFD+tP  +i++iitEkGvi+p
  MMETSP1061-20121228|9022_1  56 AYTVIKTMQIRGAPLIAIVALLGLSVDMHTNAKtieeldklaSDADSLLAWIREKMAYLKSSRPTAVNLTNALIEVEEKMKEaleSNSGEDDKKkvlckAVLDYSEFMLERDVSDNKAIGKFGAEAilkktGKDKINLVTICNTGSLATAGYGTALGVARSLQEMGKLESISALETRPYNQGSRLTAFEIMEEKMPGgQLICDSSAGALMQTKNVDACVVGADRVCANGDTANKIGTYNLSIIAAFHKIPFYVAAPITSLDITLDSGKSIPIEERSSEELIST---SKAPSGMPCWNPAFDVTPDCNISGIITEKGVIEP 372
                 6899****************999876554443346669999999999*************************98776655542224444444441111146777888999**************99777777999************************************************************9548*********************************************************************************955...88*****************************986 PP

>> TIGR00511  ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.2   0.2   4.2e-45   4.3e-42       4     290 ..      55     374 ..      52     382 .. 0.80

  Alignments for each domain:
  == domain 1    score: 142.2 bits;  conditional E-value: 4.2e-45
   TIGR00511   4 etaekiksmeirGaariaraaaeal....keqaakae.....aaseeefkkelreaakllietrPtavslpnalryvlkel....sgedveelreeviera....defiekle.kaleklGeiGakri.....kdGdvvmthCnsea........alsviktafeqGkdievivtetrPrkqG.hitakelrelGipv.tlivdsaaryfl..kevdkvvvGadaitanGavinkiGtsqlalaakearvsvlvaaetyklsPktllGelveieerdaeevvdeeelkelgavkvrnPafdvtPaeyidviitekGliPPes 290
                  +++ ik+m+irGa  ia  a   l    ++ a+++e     a++++++ + +re    l ++rPtav l nal  v +++    ++++ e+ +++v+ +a    +ef+ + + +  + +G++Ga+ i     kd   ++t Cn+ +        al v ++  e Gk  ++ + etrP +qG ++ta e+ e  +p  +li ds+a   +  k+vd +vvGad ++anG   nkiGt +l+++a  +++++ vaa    l  +   G+ + ieer++ee++++ +  +  ++  +nPafdvtP   i  iitekG+i P+s
  MMETSP1061-20121228|9022_1  55 MAYTVIKTMQIRGAPLIAIVALLGLsvdmHTNAKTIEeldklASDADSLLAWIREKMAYLKSSRPTAVNLTNALIEVEEKMkealESNSGEDDKKKVLCKAvldySEFMLERDvSDNKAIGKFGAEAIlkktgKDKINLVTICNTGSlatagygtALGVARSLQEMGKLESISALETRPYNQGsRLTAFEIMEEKMPGgQLICDSSAGALMqtKNVDACVVGADRVCANGDTANKIGTYNLSIIAAFHKIPFYVAAPITSLDITLDSGKSIPIEERSSEELISTSKAPS--GMPCWNPAFDVTPDCNISGIITEKGVIEPDS 374
                 57889*************998655411115556555522222345677888999********************999888866675555566666665544233345654444155678******988665556777899***96422222333389999999******9*************559*****999999538*****9999884468**********************************************999999***************9877665..999************************9986 PP

>> TIGR02428  pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.8e-05     0.018      74     113 ..     249     288 ..     217     295 .. 0.89
   2 ?   -0.9   0.0      0.19     2e+02     159     186 ..     353     381 ..     348     389 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.8e-05
   TIGR02428  74 llpgasifdsadsfaliRgghvdvavlGalqvseegdlan 113
                  +pg+ ++  +++ al++ ++vd +v+Ga +v ++gd an
  MMETSP1061-20121228|9022_1 249 KMPGGQLICDSSAGALMQTKNVDACVVGADRVCANGDTAN 288
                 57888888888999*************************9 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.19
   TIGR02428 159 Pltgkkvvdrivtelavleveee.glvlk 186
                  +t    ++ i+te++v+e +++ ++ +k
  MMETSP1061-20121228|9022_1 353 DVTPDCNISGIITEKGVIEPDSDgKFNVK 381
                 5677788999********98766255555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.38
# Mc/sec: 1354.62
//
Query:       MMETSP1061-20121228|9030_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   10.9   0.0      0.049   10.6   0.0    1.0  1  TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ


Domain annotation for each model (and alignments):
>> TIGR03994  rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.2e-05     0.049     197     221 ..      46      70 ..      41      71 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.2e-05
   TIGR03994 197 gvsRisinPqtmndktLkliGRkHt 221
                  v+R+s+ P t +++tLk + R+H 
  MMETSP1061-20121228|9030_1  46 VVNRVSVHPETGSNRTLKEVFREHM 70 
                 589*********************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.37
# Mc/sec: 256.84
//
Query:       MMETSP1061-20121228|9031_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1599.71
//
Query:       MMETSP1061-20121228|9032_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 2963.37
//
Query:       MMETSP1061-20121228|9033_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1590.47
//
Query:       MMETSP1061-20121228|9027_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 2956.56
//
Query:       MMETSP1061-20121228|9034_1  [L=770]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.36
# Mc/sec: 2823.10
//
Query:       MMETSP1061-20121228|9037_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00023   19.0  26.2       0.15   10.1   0.0    9.8 11  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.089   3.6e+02      15      29 ..     170     184 ..     155     191 .. 0.62
   2 !   10.1   0.0   3.8e-05      0.15       2      19 ..     193     210 ..     192     219 .. 0.86
   3 !    3.1   0.0    0.0064        26       2      21 ..     235     254 ..     234     262 .. 0.89
   4 ?   -0.5   0.0     0.092   3.8e+02       2      15 ..     327     340 ..     326     347 .. 0.84
   5 ?   -1.2   0.0      0.15     6e+02       2      15 ..     450     463 ..     449     464 .. 0.87
   6 ?    2.1   0.2     0.014        56       2      27 ..     493     518 ..     492     522 .. 0.75
   7 !    4.5   0.0    0.0023       9.5       1      19 [.     534     552 ..     534     553 .. 0.85
   8 !    8.5   0.2   0.00012      0.51       1      23 [.     577     599 ..     577     609 .. 0.72
   9 ?   -2.6   0.0      0.41   1.7e+03       1      11 [.     621     631 ..     621     631 .. 0.89
  10 ?   -2.7   0.0      0.44   1.8e+03       3      11 ..     666     674 ..     666     675 .. 0.88
  11 ?   -1.1   0.1      0.14   5.6e+02      17      32 ..     684     700 ..     682     701 .. 0.81

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.089
   TIGR00756  15 rveeAlelfdeMker 29 
                 + + A+ ++ +M+++
  MMETSP1061-20121228|9037_1 170 SADRAEAILLQMEKE 184
                 446677777777554 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 3.8e-05
   TIGR00756   2 tyntlisglckagrveeA 19 
                 +yn++i++l+k+g+   A
  MMETSP1061-20121228|9037_1 193 SYNAVIKALVKNGDRQSA 210
                 8************97655 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.0064
   TIGR00756   2 tyntlisglckagrveeAle 21 
                 +yn l+ +l+++++ + A++
  MMETSP1061-20121228|9037_1 235 SYNFLLYALANSNQADAAER 254
                 8***************9987 PP

  == domain 4    score: -0.5 bits;  conditional E-value: 0.092
   TIGR00756   2 tyntlisglckagr 15 
                 tyn l+ g  k+++
  MMETSP1061-20121228|9037_1 327 TYNNLMGGWLKSNK 340
                 9******9999876 PP

  == domain 5    score: -1.2 bits;  conditional E-value: 0.15
   TIGR00756   2 tyntlisglckagr 15 
                 +y ++i++++k +r
  MMETSP1061-20121228|9037_1 450 SYIAVIKAHVKYKR 463
                 899*******9876 PP

  == domain 6    score: 2.1 bits;  conditional E-value: 0.014
   TIGR00756   2 tyntlisglckagrveeAlelfdeMk 27 
                  yn+ +++++   +++  +++ d+++
  MMETSP1061-20121228|9037_1 493 LYNCAMNAYASIHSFRVLKKVKDLLQ 518
                 59999***999888877777666655 PP

  == domain 7    score: 4.5 bits;  conditional E-value: 0.0023
   TIGR00756   1 vtyntlisglckagrveeA 19 
                 +tynt+i+++ + ++ +eA
  MMETSP1061-20121228|9037_1 534 ITYNTVIKAMRNGNKEREA 552
                 69*******9988887777 PP

  == domain 8    score: 8.5 bits;  conditional E-value: 0.00012
   TIGR00756   1 vtyntlisglckagrveeAlelf 23 
                 ++y+++i +++++   ++A++ +
  MMETSP1061-20121228|9037_1 577 YSYTSVITAYARSSLSNKAEKAL 599
                 69**********87766666544 PP

  == domain 9    score: -2.6 bits;  conditional E-value: 0.41
   TIGR00756   1 vtyntlisglc 11 
                 +t+n+ +++++
  MMETSP1061-20121228|9037_1 621 HTFNAALNSCA 631
                 59******996 PP

  == domain 10    score: -2.7 bits;  conditional E-value: 0.44
   TIGR00756   3 yntlisglc 11 
                 y t++++++
  MMETSP1061-20121228|9037_1 666 YGTMLRACS 674
                 89*****97 PP

  == domain 11    score: -1.1 bits;  conditional E-value: 0.14
   TIGR00756  17 eeAlelf.deMkergiv 32 
                 e++++lf +e +++g+v
  MMETSP1061-20121228|9037_1 684 EKMVDLFfQEACDKGCV 700
                 57777777999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.27
# Mc/sec: 3700.58
//
Query:       MMETSP1061-20121228|9029_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-26   88.7  21.6    1.3e-24   84.4  15.0    2.1  1  TIGR00815 sulP: sulfate permease


Domain annotation for each model (and alignments):
>> TIGR00815  sulP: sulfate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4  15.0   3.3e-28   1.3e-24      16     416 ..      10     446 ..       7     460 .. 0.80

  Alignments for each domain:
  == domain 1    score: 84.4 bits;  conditional E-value: 3.3e-28
   TIGR00815  16 gDliAGltvgillvPqamayaklaglsPeyGLYtsfvaaliyalfgtSrdiaiGpvavlslllgkvvaevl..kkakedvdaikiattltllaGivqvllGllrlGflveflskavisGFmtGaaitIllsQikkllGlsi.vntredtlkvvistwkslpntkl........................anlldlviglvlllfllatkklakrlkkllfliavaelvvvivatlavsvg.......ksskkrgvsilgh...ipsg....pevvpekildg.ellsalapdaiaialvgllesiaiaksfarmkgykvdanqElvaiGiaNiigsffscypatgslsrsavkakagcktalsavvtaivvllvllvlapllllipkavlaaiiivavrg.lvdlkelyklwkvsklDvvvllvtvflvvftsieiGllvgval 416
                 +Dl++G + ++  vPq +aya+  g +   GL t+  + +   ++ + + ++ G +++++l+  + ++ ++  +++ e   + +++++  + +Gi  v+l l+ +G+l  +++k v +GF  G a+ +l+s +++  Gl +   ++ ++l v  +++ ++   ++                        + l   ++ ++   f++  kkl ++       +++a+  + + ++ + + g         + ++g++i+g+   ip      ++v+++++ d    ++ala +++  a v +l  + ia  f + +g   +a +El+a+G    +++++++ p++gs+srs+v+ ++g +++l+ ++tai+ ++++  + +++  +pka+l+a+i++av +  v     + l  ++  D+ v  +t++l+++ts + G   g++l
  MMETSP1061-20121228|9029_1  10 RDLVSGAIMAATSVPQLIAYAETVGYAGYRGLATAGPPLMAWGFVTGGPFMNAGVTSITALMAKSDLNGEAymAEHGE-EAYVELVAAYSMYVGIASVFLALVGFGRLAAYVPKCVATGFKWGCALGVLVSALPN--GLFNkGSKQVKALVVDDAIFGAFVSAIKasapqatgavnvagfiyslthplqWALVPTIMFVIGTWFVMNGKKLLPKSLPPGTEVIIATAGATLYSMNFNYSGgvvgeipTLDADAGIAIPGTglkIPVAlldfQKVLDAPVADRmGGWPALAITSMLFAGVNFLSIMGIASGFESENGIPWSAPRELIAQGASCGVAALVGSAPVSGSMSRSLVSRMTGTTSQLACILTAIIWIVAMPYM-NIMSPTPKAALSAVIVSAVLKsVVMP---KSLMALKGIDFAVGWGTAVLTAMTSPTLGFGSGLVL 446
                 7*******************************999988888889999****************998776551144444.699***************************************************97..5555223444444444555555555544666777799999999988877655444444444444445555555555555455555555555555555555555888899999999999999965447776777666777777764146899********************************************************************************9998888765.6899***************8844444...4566667789***************99888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1797.38
//
Query:       MMETSP1061-20121228|9038_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.3    5.1  10.9         45    1.7   7.6    2.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   7.6     0.011        45      22     134 ..     114     224 ..      14     295 .. 0.76

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.011
   TIGR03499  22 lGpdavIlstrkvrkgglfskkkvevvaaideeesasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselal.e 134
                 lG+ a  + ++  + g    ++++ v a  + + + +   ee ++++++++a++++ ++ +++  + ++ +    ++++++ +  +e+ +   kel++++++l++q+++l+  +
  MMETSP1061-20121228|9038_1 114 LGDSAASVAKKHGKPG---IRESLSVPAESKISRAPQPHDEESDESQNVRKADTRDDNTLDTNSGSISSRDPGIGKSEHQQDPGSPESLDGNGKELSDIRRALQQQMKGLRPvK 224
                 5555555555555555...3333444444444333333334444444444444444444444444444445555666677777777777*******************997652 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1548.33
//
Query:       MMETSP1061-20121228|9040_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-08   31.9   0.0    6.1e-05   19.6   0.0    2.6  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
  ------ inclusion threshold ------
       0.02   11.8   0.0      0.029   11.2   0.0    1.1  1  TIGR02716 C20_methyl_CrtF: C-20 methyltransferase BchU


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   3.2e-05     0.066     202     251 ..       2      54 ..       1      69 [. 0.84
   2 !   19.6   0.0     3e-08   6.1e-05     269     321 ..     163     228 ..     140     282 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 3.2e-05
   TIGR01982 202 Eaanaselkenfknd...kklivPevyweltservltlewidgipvsdleklk 251
                 Ea++ + ++ n+ ++   k+++vP+ +  l+++++l++e +dg ++sd  + +
  MMETSP1061-20121228|9040_1   2 EAESLATIRTNILKSpfsKTIRVPKPVLGLCGKELLIMELLDGAKLSDSLEAD 54 
                 788888888888875232799***************************87665 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 3e-08
   TIGR01982 269 lkqvlrdgfFHaDlHpGNilvakd.............gkiialDfGivgrlseeerrylaeillgf 321
                   q+lrdg+F +D+HpGNil  +              + + ++D+G    +s++er  +a+++l++
  MMETSP1061-20121228|9040_1 163 GYQMLRDGVFQGDPHPGNILELRSntkkggtilgrksAILGLIDYGQTKAISDRERLGIARVILAL 228
                 5699****************8887789999999877555668999999999999999888776665 PP

>> TIGR02716  C20_methyl_CrtF: C-20 methyltransferase BchU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.4e-05     0.029      32      86 ..     241     295 ..     226     306 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.4e-05
   TIGR02716  32 dtesvpprlekllitleqirlvtleddkwsltefadqlfadtekernltqvpvvd 86 
                  + +   r+e++  ++++++ vt++dd+  l+++a  +f   e  + l   p  +
  MMETSP1061-20121228|9040_1 241 MASTNSTRVERIADAMRDLGFVTKNDDSGVLAQYAGLFFDSDEIGKRLYDCPTPQ 295
                 5566778********************************9999888888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1678.15
//
Query:       MMETSP1061-20121228|9041_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 487.79
//
Query:       MMETSP1061-20121228|9043_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 764.15
//
Query:       MMETSP1061-20121228|9039_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00016   20.1   4.6      0.018   13.5   0.3    4.4  5  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
      0.001   16.6   4.0      0.084   10.4   0.2    3.2  4  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
  ------ inclusion threshold ------
      0.067   10.7   0.0      0.067   10.7   0.0    2.4  2  TIGR03936 sam_1_link_chp: radical SAM-linked protein


Domain annotation for each model (and alignments):
>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   1.3e-05     0.018      34      73 ..      44      83 ..      38      92 .. 0.87
   2 ?    1.7   0.0     0.059        81      39      64 ..     143     168 ..     138     172 .. 0.84
   3 ?    0.1   0.0      0.18   2.5e+02      48     104 ..     224     285 ..     221     294 .. 0.62
   4 ?    0.7   0.0      0.12   1.6e+02      54      99 ..     279     322 ..     247     341 .. 0.61
   5 ?    0.8   0.2      0.12   1.6e+02      45      92 ..     343     390 ..     300     394 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.3e-05
   TIGR02795 34 kstlapnAqYwlGealyakkkykdAakaflevvkkypkse 73
                ks+ ++ A+Y lG a+ a+k++k+A+k+ + + + y++++
  MMETSP1061-20121228|9039_1 44 KSREVAAAHYSLGLAYRATKEFKQAIKHLNRAQEIYESQK 83
                6788999*********************999988887765 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.059
   TIGR02795  39 pnAqYwlGealyakkkykdAakafle 64 
                 + ++Y lG al  ++++++A ++ + 
  MMETSP1061-20121228|9039_1 143 GRSYYVLGCALSDRGDFDEALAELRR 168
                 66899**************9988765 PP

  == domain 3    score: 0.1 bits;  conditional E-value: 0.18
   TIGR02795  48 alyakkkykdAakaflevvkkypk.....sekapdallklgeslqelgqkekAkktlqevik 104
                  l +k++++dA  +++++++   +     ++ + d  l+++e l+e+g+ e +   ++  i+
  MMETSP1061-20121228|9039_1 224 ILSRKGELEDALIYYKKALSLEMQylgdlHPTSCDLYLRMAETLSESGDLEGSLVEYKSAIT 285
                 56667777777777776665443322233667777777777777777777766666665554 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.12
   TIGR02795  54 kykdAakaflevvkkypksekapdallklgeslqelgqkekAkktl 99 
                 +yk+A++ ++ ++ k+  + k +d   +l+ +l + g+ e+A + +
  MMETSP1061-20121228|9039_1 279 EYKSAITIYERLMGKF--HVKMADIYSRLAGVLMDKGEYETALSFY 322
                 3333333333333322..4566666666666666666666665555 PP

  == domain 5    score: 0.8 bits;  conditional E-value: 0.12
   TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqk 92 
                 l ++ +a++k ++A+ + + +vk+ ++ +k+  +l   g+s +e ++k
  MMETSP1061-20121228|9039_1 343 LMNVKLAAEKNRAAKSSMEILVKAEEEFKKRHPQLTANGVSDSEDEKK 390
                 455666777888888888888888888888888888777777766665 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0015         2      87     127 ..      50      91 ..      20     100 .. 0.70
   2 ?   -3.4   0.0       1.2   1.6e+03      25     106 ..     150     163 ..     139     173 .. 0.43
   3 ?   -2.4   0.0      0.58     8e+02      65      84 ..     228     247 ..     224     278 .. 0.78
   4 !   10.4   0.2   6.1e-05     0.084      34      84 ..     280     331 ..     276     378 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0015
   TIGR02552  87 rpvyhaaecllalgekeeAlkaLklaieiae.ekeeyselke 127
                 +++y ++  + a +e ++A k L++a ei e +k e  e+ e
  MMETSP1061-20121228|9039_1  50 AAHYSLGLAYRATKEFKQAIKHLNRAQEIYEsQKGETDEYAE 91 
                 456666666666666666666666666666544455555555 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 1.2
   TIGR02552  25 AYnlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAl 106
                 + +l  +g++                                                                     eAl
  MMETSP1061-20121228|9039_1 150 GCALSDRGDF--------------------------------------------------------------------DEAL 163
                 2222223333....................................................................3333 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.58
   TIGR02552  65 lkeyeeAiaaYalaaaldld 84 
                 ++e e+A+  Y+ a++l+++
  MMETSP1061-20121228|9039_1 228 KGELEDALIYYKKALSLEMQ 247
                 67778888888888877764 PP

  == domain 4    score: 10.4 bits;  conditional E-value: 6.1e-05
   TIGR02552  34 yeeAeklFqlLa.aldpteakywlgLaaclqalkeyeeAiaaYalaaaldld 84 
                 y+ A ++++ L+  + +  a+   +La +l+ ++eye+A+ +Ya a+ ++  
  MMETSP1061-20121228|9039_1 280 YKSAITIYERLMgKFHVKMADIYSRLAGVLMDKGEYETALSFYAKAYGIYDG 331
                 6666667666652355566778889*******************99987755 PP

>> TIGR03936  sam_1_link_chp: radical SAM-linked protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.9e-05     0.067     101     155 ..      41      95 ..      26     119 .. 0.79
   2 ?   -2.0   3.0      0.37   5.1e+02     141     164 ..     404     428 ..     344     435 .] 0.67

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.9e-05
   TIGR03936 101 akslmalveaaeYrvtleleeeeeleeaieeflaaeeievekktkkgkkkvdirp 155
                   s++ +v+aa+Y++ l + +++e+++ai+ +++a+ei  ++k    +  ++++ 
  MMETSP1061-20121228|9039_1  41 YGSKSREVAAAHYSLGLAYRATKEFKQAIKHLNRAQEIYESQKGETDEYAEEVKN 95 
                 578999******************************9988776555444444444 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.37
   TIGR03936 141 ekktkkgkkkv.dirplikeleved 164
                 +kk+kk+kkk+ d ++  k+ ev+d
  MMETSP1061-20121228|9039_1 404 KKKKKKKKKKKkDKKDKDKDKEVDD 428
                 4444444444448777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       313  (0.0763042); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 1688.68
//
Query:       MMETSP1061-20121228|9042_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.10s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1591.87
//
Query:       MMETSP1061-20121228|9047_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 1080.23
//
Query:       MMETSP1061-20121228|9046_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-15   54.5   0.0    3.1e-15   54.1   0.0    1.1  1  TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 family
    1.1e-12   45.5   0.0    1.3e-10   38.6   0.0    2.0  2  TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
    5.1e-09   33.3   0.0    7.5e-09   32.8   0.0    1.1  1  TIGR03965 actino_glycTran: mycofactocin system glycosyltransferase
    1.5e-08   31.9   0.0      2e-08   31.5   0.0    1.1  1  TIGR03469 HpnB: hopene-associated glycosyltransferase HpnB
    4.1e-06   23.7   0.0    5.2e-06   23.3   0.0    1.1  1  TIGR03472 HpnI: hopanoid biosynthesis associated glycosyl transferase protein HpnI
    8.7e-06   22.6   0.0    1.4e-05   21.9   0.0    1.2  1  TIGR03111 glyc2_xrt_Gpos1: putative glycosyltransferase, TIGR03111 family
    7.8e-05   19.8   0.0    0.00011   19.4   0.0    1.2  1  TIGR01556 rhamnosyltran: rhamnosyltransferase
    0.00014   19.1   0.0     0.0002   18.6   0.0    1.3  1  TIGR04009 wcaE: colanic acid biosynthesis glycosyl transferase WcaE
  ------ inclusion threshold ------
      0.012   13.1   0.0      0.014   12.8   0.0    1.2  1  TIGR04017 WcaA: colanic acid biosynthesis glycosyl transferase WcaA


Domain annotation for each model (and alignments):
>> TIGR04182  glyco_TIGR04182: glycosyltransferase, TIGR04182 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   6.9e-18   3.1e-15       3     200 ..       4     216 ..       3     226 .. 0.84

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 6.9e-18
   TIGR04182   3 cvliPtlneaat...igeviee.fkelGy.edilvidGnstddtqeiak.......eaGarvvaqsGk.GkGqavreavelidkpyvllldgdgtylpedaeallePllsGeadhviGnrladleeg.altrlnlvGnkllnklfkiiygkelediLsGyraftresikrl..eLkeeGfeietelavesvkkelrvevvpitykkrpegsetk 200
                 +v++Pt+ne +    i  +i++ f+e+ +  +++++d  s d+t e+a+       e+  ++v+++Gk G G+a + +++    + ++l+d+d  ++p+ + ++++ + + + + v G r+a+           ++  k  n l ++  +  ++d+   +r ++r++++++  +++ +G+  + e+ v s k + +v++vpi++  r   +e k
  MMETSP1061-20121228|9046_1   4 SVILPTYNERENlpiIFYLIDKvFNEAKLsYEVVIVDDSSPDNTLEVAQaiqksygEEHVQIVSRKGKlGLGTAYIAGLKAARGDRIVLMDADLSHHPKFIPQMVKLMDKTKVEIVTGTRYAQGGGVyGWDMKRKLTSKGANFLADFLLNPGVSDLTGSFRLYERKVLEQIlpQIQCKGYAFQMEIIVRSKKAGFKVNEVPISFVDRI-YGESK 216
                 589******9863336788988355555425899**********999973333222345789999998899***************************************************97655134444567778888889999999*******************9667999******************************8.45555 PP

>> TIGR03937  PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.9e-13   1.3e-10      48     162 ..       4     122 ..       1     127 [. 0.87
   2 !    6.9   0.0    0.0013      0.57     119     198 ..     120     201 ..     116     209 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.9e-13
   TIGR03937  48 sllvpcynegenve...etisallklkypnleviainDGskDdtaeildklakk..edrlrvihleenqGkaaalneglkaakseylvciDgDalldekalkylveelkenpkvgavtGn 162
                 s+++p+yne en+      i+++ +    ++ev++++D s D+t e+ ++++k+  e++++++ ++   G  +a  +glkaa+ + +v +D+D    +k +  +v+ l++++kv  vtG 
  MMETSP1061-20121228|9046_1   4 SVILPTYNERENLPiifYLIDKVFNEAKLSYEVVIVDDSSPDNTLEVAQAIQKSygEEHVQIVSRKGKLGLGTAYIAGLKAARGDRIVLMDADLSHHPKFIPQMVK-LMDKTKVEIVTGT 122
                 89**********7622256778888888899*****************99999733588**********************************9999999999997.5577899999995 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0013
   TIGR03937 119 eglkaakseylvciDgDalldekalkylveelkenpkvgavtGnPrirnrs...tllGkiqvgefssiiGlikraqrvlGkif 198
                 +g+++a+   + + D    l +k +++l  ++  np v+  tG  r+ +r+    +l +iq   ++  + +i r+++   k++
  MMETSP1061-20121228|9046_1 120 TGTRYAQGGGVYGWDMKRKLTSKGANFL-ADFLLNPGVSDLTGSFRLYERKvleQILPQIQCKGYAFQMEIIVRSKKAGFKVN 201
                 6778888888888888888999999987.67999*************999733368****************99988766665 PP

>> TIGR03965  actino_glycTran: mycofactocin system glycosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.8   0.0   1.6e-11   7.5e-09      77     189 ..       4     121 ..       3     126 .. 0.80

  Alignments for each domain:
  == domain 1    score: 32.8 bits;  conditional E-value: 1.6e-11
   TIGR03965  77 tvVvPvrdrpaglarllaalea.ldyprdrlevivVDDgSedpvetaaar....aaeltvrviRhdrsqGpaaaRNaGlraartefvAFlDsDvvprpgWLeallaefsdpgValvap 189
                 +v++P  +  ++l  +   ++   + ++   ev++VDD+S d++ + a++     +e +v+++  + + G  +a  aGl+aar++ +  +D D   +p ++ +++  +++++V++v++
  MMETSP1061-20121228|9046_1   4 SVILPTYNERENLPIIFYLIDKvFNEAKLSYEVVIVDDSSPDNTLEVAQAiqksYGEEHVQIVSRKGKLGLGTAYIAGLKAARGDRIVLMDADLSHHPKFIPQMVKLMDKTKVEIVTG 121
                 57777777777776666655431344555689********9987544332211378899********************************************************987 PP

>> TIGR03469  HpnB: hopene-associated glycosyltransferase HpnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   4.5e-11     2e-08      74     168 ..      33     119 ..       3     122 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 4.5e-11
   TIGR03469  74 klkvilvDDeseDgtaeiarevaealdkadrltvvsgkelpkgWsGklWaveqGleaakalaaeyllltDaDiahepdnlarlvakaekedldlv 168
                 +++v++vDD+s D t e+a+++ +++++ +++++vs k    g  G   a   Gl+aa+    + ++l DaD+ h+p+ + ++v+ ++k ++++v
  MMETSP1061-20121228|9046_1  33 SYEVVIVDDSSPDNTLEVAQAIQKSYGE-EHVQIVSRK----GKLGLGTAYIAGLKAARG---DRIVLMDADLSHHPKFIPQMVKLMDKTKVEIV 119
                 568*********************9995.59***9965....445666788899999995...999*******************9999998876 PP

>> TIGR03472  HpnI: hopanoid biosynthesis associated glycosyl transferase protein HpnI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.1e-08   5.2e-06      70     162 ..      33     122 ..      19     147 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.1e-08
   TIGR03472  70 gfqllfgvadadDpalavvrrLqaefpdadielvidarlhGsNlKvsNLvnllakarhdvlviaDsDisvepdYlrevvapladpdvGvVTcl 162
                  +++++   +  D  l+v +++q+++ + ++++v  + + G  +     +  l++ar d +v+ D+D+s +p+++ ++v+ +++ +v +VT  
  MMETSP1061-20121228|9046_1  33 SYEVVIVDDSSPDNTLEVAQAIQKSYGEEHVQIVSRKGKLGLGT---AYIAGLKAARGDRIVLMDADLSHHPKFIPQMVKLMDKTKVEIVTGT 122
                 578888888899***********************999999764...45667799************************************65 PP

>> TIGR03111  glyc2_xrt_Gpos1: putative glycosyltransferase, TIGR03111 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     3e-08   1.4e-05      53     170 ..       5     124 ..       2     142 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3e-08
   TIGR03111  53 iiiPvynsedtlknciesiknssypkk..lidvilvnnqssddsfkvfaraqkefpelslrylns..dqGkakalnaaiyksiGkyiinidsdGvlekdaiknmvtrfendpeiaaltGvvl 170
                 +i+P yn  + l      i+ + +++   + +v++v+++s d++ +v   +qk++ e +++ +    + G   a  a++  + G  i+ +d+d   + + i +mv+ ++ + +++ +tG+  
  MMETSP1061-20121228|9046_1   5 VILPTYNERENLPIIFYLID-KVFNEAklSYEVVIVDDSSPDNTLEVAQAIQKSYGEEHVQIVSRkgKLGLGTAYIAGLKAARGDRIVLMDADLSHHPKFIPQMVKLMD-KTKVEIVTGTRY 124
                 899******99976655555.55554401468***********************999998775311456689*******************************98766.568999999865 PP

>> TIGR01556  rhamnosyltran: rhamnosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.3e-07   0.00011      21     106 ..      33     119 ..       9     126 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.3e-07
   TIGR01556  21 vdkiivvDnsslse.selkellek...kekiklislsdneGiAaAqnlGlkaslkkevekvlllDqDsvlaneflakelkllseeklqvv 106
                   ++++vD+ss  +  e  ++++k    e+++++s   + G+ +A+  Glka+     ++++l+D D   + +f+ ++ kl+++ k+++v
  MMETSP1061-20121228|9046_1  33 SYEVVIVDDSSPDNtLEVAQAIQKsygEEHVQIVSRKGKLGLGTAYIAGLKAA---RGDRIVLMDADLSHHPKFIPQMVKLMDKTKVEIV 119
                 467999999866555444444444222699*********************97...45789***********************997765 PP

>> TIGR04009  wcaE: colanic acid biosynthesis glycosyl transferase WcaE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.3e-07    0.0002       1     109 [.       1     113 [.       1     142 [. 0.80

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.3e-07
   TIGR04009   1 mllsvitvafrnyegvvktwrslrnlardpelsfewivvdggsndgt...aefleklngefnlrfvsekdk.giydamnkgialaqgryalflnsgdvfhedvadfvrqlarq 109
                 ml svi  ++ + e +   +  + ++ ++ +ls+e ++vd  s d t   a+ ++k  ge  ++ vs k k g+  a   g++ a+g   +++++    h +    + +l  +
  MMETSP1061-20121228|9046_1   1 MLYSVILPTYNERENLPIIFYLIDKVFNEAKLSYEVVIVDDSSPDNTlevAQAIQKSYGEEHVQIVSRKGKlGLGTAYIAGLKAARGDRIVLMDADLSHHPKFIPQMVKLMDK 113
                 88999999999999999999999**********************99333456788899999******98769**************98887777666666544433344333 PP

>> TIGR04017  WcaA: colanic acid biosynthesis glycosyl transferase WcaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   3.1e-05     0.014       6     107 ..       2     108 ..       1     150 [. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.1e-05
   TIGR04017   6 lisiymptwn.rqqlai..raiksvlrqdydnweliivddcs..ssyeqlqkfveelndprvkyihndlnsgacavrnqailqakgeyitgiddddewtpnrlsvfl 107
                 l s+ +pt+n r++l i    i+ v+ +    +e++ivdd s  ++ e  q   ++ ++  v+ +  + + g  +     +  a+g+ i  +d d    p+ +  ++
  MMETSP1061-20121228|9046_1   2 LYSVILPTYNeRENLPIifYLIDKVFNEAKLSYEVVIVDDSSpdNTLEVAQAIQKSYGEEHVQIVSRKGKLGLGTAYIAGLKAARGDRIVLMDADLSHHPKFIPQMV 108
                 67999****9566776622679******************993335688888999999*****99999999999888899999999999999999888877654433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1198.05
//
Query:       MMETSP1061-20121228|9048_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 989.92
//
Query:       MMETSP1061-20121228|9044_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2609.32
//
Query:       MMETSP1061-20121228|9049_1  [L=740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    5.4   8.0        1.5    4.9   5.5    1.3  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.5   0.00036       1.5     159     296 ..     172     262 ..     105     438 .. 0.55

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00036
   TIGR00934 159 eledrtetkvrtrtqvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesis..slrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeesse 296
                 ele++ e+++ +r                                                d + +   +r d++ +kk++  v sek +++    d +    ++s++  ++ ++++++++dk +e+ s+++++++++ e
  MMETSP1061-20121228|9049_1 172 ELESELESESDSR-----------------------------------------------PDAAKNkgKQRKDKK-DKKEKRVVGSEKKEEKPADDDAQK-GAEESNEAKLDDDKTNEQENDKEKEKTSTEQQQQQQQQE 262
                 2222222222222...............................................111111100111111.111111122222222221111111.111111111112222221122211111111111111100 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       305  (0.074354); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.13s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 2325.52
//
Query:       MMETSP1061-20121228|9055_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   10.3  18.0      0.025   10.1  12.5    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  12.5   6.1e-06     0.025     349     485 ..      23     158 ..       1     198 [. 0.33

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.1e-06
   TIGR02168 349 lkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleael.eqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeee 485
                 +k++ ++++a+ + +++e+   e++l++ +e ++  ++++a  + ++ +l++++++le+++ + ++e+++ l ++ ++ +++++  +a  +elq++l++l+  l e eeel++ + +l +l++++  +e ++ +  +e
  MMETSP1061-20121228|9055_1  23 TKKNNQAQDAKEAPSQNEKTWKERKLDAINESMRLNEEDLATSKAKVLRLQNRVSSLENTIlTGIQEKVKILAEDDSHGSDAKQ--SAGWRELQGRLKTLNDSLRENEEELATNKVELGRLQDRVSSLEYKIISQIQE 158
                 222222222222222222222233333333333333333333333333333333333322112222222222222222222222..3333333333333333333333333333333333333333333222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1147.73
//
Query:       MMETSP1061-20121228|9054_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 2814.01
//
Query:       MMETSP1061-20121228|9058_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 777.27
//
Query:       MMETSP1061-20121228|9059_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1524.70
//
Query:       MMETSP1061-20121228|9060_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1061.19
//
Query:       MMETSP1061-20121228|9062_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 611.32
//
Query:       MMETSP1061-20121228|9057_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-10   36.3   5.4    7.9e-10   36.3   3.7    2.9  3  TIGR00599 rad18: DNA repair protein rad18
  ------ inclusion threshold ------
       0.24    8.5   9.2      0.055   10.7   3.4    1.9  2  TIGR00570 cdk7: CDK-activating kinase assembly factor MAT1


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   3.7   3.9e-13   7.9e-10      22      71 ..      14      65 ..      12      88 .. 0.88
   2 ?   -0.2   0.1      0.05     1e+02     150     203 ..     119     172 ..      87     190 .. 0.63
   3 ?   -1.0   2.0     0.083   1.7e+02     134     179 ..     458     503 ..     423     528 .. 0.73

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 3.9e-13
   TIGR00599 22 pldtslRChvCkdffkaPv.ltsCsHtFCslCiRrcLse.epkCPlCraedq 71
                +ld+sl C vC+  +++P+ l +C+H FC  Ci + L + + +CP+Cr+   
  MMETSP1061-20121228|9057_1 14 GLDESLICVVCHAVYDTPMvLDPCGHSFCRECIASLLDSgHENCPVCRTRMI 65
                69****************7368***************64399******8765 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.05
   TIGR00599 150 akkktadilqlssdtskrndkdyrsekpdedlvqCPi..Csqlvkekaverhldse 203
                  +++++     + +   +++k + ++     lv+CP+  C    ++ a+ +h  ++
  MMETSP1061-20121228|9057_1 119 NQQSQSHTCSWTGK--LSEFKSHADKDCPLRLVSCPVpgCDWKGPHCALGQHNADS 172
                 34444444433333..45566666666667899**988899999999999998775 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.083
   TIGR00599 134 eeseddlrsasssraaakkktadilqlssdtskrndkdyrsekpde 179
                 + s++++r ++s + ++ ++ a     s++ s +nd+d+ +++ d+
  MMETSP1061-20121228|9057_1 458 HPSQQHHRPRTSMQDRSSRRRARAFGHSDQHSSSNDNDKDDDNDDD 503
                 3344555666777777777777778889999999999998876555 PP

>> TIGR00570  cdk7: CDK-activating kinase assembly factor MAT1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.4   2.7e-05     0.055      21      52 ..      32      63 ..      16      66 .. 0.84
   2 ?   -1.1   0.1       0.1   2.1e+02      88     169 ..     393     474 ..     381     482 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.7e-05
   TIGR00570 21 llvnvCghtlCesCvdllfvrGsgsCpeCdtp 52
                ++ + Cgh +C  C+  l   G  +Cp C t 
  MMETSP1061-20121228|9057_1 32 MVLDPCGHSFCRECIASLLDSGHENCPVCRTR 63
                45679************************985 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.1
   TIGR00570  88 dfpsLkeyndyL.eevedivynLtnnvdlektkkkleaykkenkeviqknkekltreqeeleealelekeeeekkrlllqkle 169
                 + ++ +eyn    e +e  + +L+  +d  + kk l+ +++e  + + + + k +r  +  ee+ +   +++ + r  +q   
  MMETSP1061-20121228|9057_1 393 NVNNSHEYNSGSsEFLERAMVKLQSKIDP-EYKKPLHSWENERWQNLEEVRWKGRRSFQLPEEREHHPSQQHHRPRTSMQDRS 474
                 56677888875514578899999999996.56888999999999999999999999888888888888888887777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 2445.92
//
Query:       MMETSP1061-20121228|9056_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 813.93
//
Query:       MMETSP1061-20121228|9066_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.8   0.2      0.027   12.0   0.1    1.3  1  TIGR02453 TIGR02453: TIGR02453 family protein


Domain annotation for each model (and alignments):
>> TIGR02453  TIGR02453: TIGR02453 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   6.5e-06     0.027     134     178 ..     285     325 ..     258     345 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.5e-06
   TIGR02453 134 pdewraivealkklkgfkldgekLkrapkgfdkdkeliealrrkd 178
                   +w+++ ++lk+   fk ++++  r pkg+dkd el++++r++ 
  MMETSP1061-20121228|9066_1 285 KAQWEKMFAKLKQ---FK-KEFSHCRVPKGYDKDWELANWVRNQR 325
                 5689999998877...66.556779*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 2296.61
//
Query:       MMETSP1061-20121228|9068_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 691.37
//
Query:       MMETSP1061-20121228|9067_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-17   60.8   0.0    2.9e-17   60.6   0.0    1.0  1  TIGR01023 rpmG_bact: ribosomal protein L33
  ------ inclusion threshold ------
       0.02   12.7   0.0      0.026   12.3   0.0    1.1  1  TIGR00377 ant_ant_sig: anti-anti-sigma factor


Domain annotation for each model (and alignments):
>> TIGR01023  rpmG_bact: ribosomal protein L33
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   1.4e-20   2.9e-17       4      56 .]      12      64 .]       8      64 .] 0.92

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 1.4e-20
   TIGR01023  4 kgkrevikLectecteknYtttkNrrnktekLeLkKfcpvvrkhvlhkEtKiK 56
                kgk+  ikL ++++t+ +Ytt+kN  n++ k ++ K++p+v+++v++kE KiK
  MMETSP1061-20121228|9067_1 12 KGKTIPIKLLSSAGTGFFYTTRKNVSNTQHKVAFVKYDPIVQRRVVFKEHKIK 64
                667788**********************************************9 PP

>> TIGR00377  ant_ant_sig: anti-anti-sigma factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   1.3e-05     0.026      55      89 ..      20      54 ..      16      58 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.3e-05
   TIGR00377 55 fmdSsGlgvllgalkqvkkrggelvLvsvservar 89
                 ++S+G g ++ + k+v++++ +++ v+ +++v+r
  MMETSP1061-20121228|9067_1 20 LLSSAGTGFFYTTRKNVSNTQHKVAFVKYDPIVQR 54
                589******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 367.27
//
Query:       MMETSP1061-20121228|9072_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 479.96
//
Query:       MMETSP1061-20121228|9070_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 958.36
//
Query:       MMETSP1061-20121228|9069_1  [L=861]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 2771.77
//
Query:       MMETSP1061-20121228|9077_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 486.28
//
Query:       MMETSP1061-20121228|9079_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-12   43.7   0.0    3.9e-12   43.4   0.0    1.0  1  TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
    0.00078   16.3   0.0    0.00085   16.1   0.0    1.0  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein


Domain annotation for each model (and alignments):
>> TIGR01931  cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   1.9e-15   3.9e-12     512     592 ..      15      97 ..      11     101 .. 0.88

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1.9e-15
   TIGR01931 512 ldlafsrDqkekiYvqdrlreq.gkelf..eWlqeGahiYvCGdakkmakDvekaLldviakegaldaeeaeeyleelrkekrY 592
                 +  afs+Dq++kiYvq+ lre  g  l   + l+ G ++Y+ G   kma+ v+++L++ +a++    + +a++ l++++   r+
  MMETSP1061-20121228|9079_1  15 ILTAFSQDQAHKIYVQKVLREAdGGSLIarHILERGGAVYIAG-GPKMARAVKQELVEALAESLPAGEKQAQQVLNKMQRMGRF 97 
                 5579****************963455542246899********.899********************************99997 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   4.2e-07   0.00085     329     410 ..      15     101 ..       7     102 .] 0.78

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 4.2e-07
   TIGR03224 329 infafsrtpeepkryvqdairera..advaallkddntyiyvcglkgmeegv....lealrevaeaagldwetleprlraegrlhlet 410
                 i  afs++    k yvq  +re+   + +a+ + + ++ +y+ g   m   v    +eal+e   a  ++ +++  ++++ gr+ +e+
  MMETSP1061-20121228|9079_1  15 ILTAFSQDQ-AHKIYVQKVLREADggSLIARHILERGGAVYIAGGPKMARAVkqelVEALAESLPAGEKQAQQVLNKMQRMGRFGIEA 101
                 567899875.5699********8622579999999********987776555222277888877788889999***********9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      200  (0.0487567); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 585.34
//
Query:       MMETSP1061-20121228|9074_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 2550.37
//
Query:       MMETSP1061-20121228|9082_1  [L=837]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (837 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.32
# Mc/sec: 3452.34
//
Query:       MMETSP1061-20121228|9083_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 811.73
//
Query:       MMETSP1061-20121228|9080_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 590.48
//
Query:       MMETSP1061-20121228|9086_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 625.21
//
Query:       MMETSP1061-20121228|9085_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.47    6.9   5.5       0.54    6.7   3.8    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit
        2.4    3.4  13.3          3    3.1   9.3    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   3.8   0.00026      0.54     204     276 ..     163     206 ..     102     225 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00026
   TIGR01651 204 gddeesedeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaet 276
                  d+          d                    +   ++++  +++ee  +e+  + ++ ++ +++ded + 
  MMETSP1061-20121228|9085_1 163 DDE----------D-------------------YGEYDNDNDNDNDDEEYYDEDYEDQEEGEEYNDEDEDEDN 206
                 111..........1...................1122222222222223333333333333333333333333 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   9.3    0.0015         3     950    1004 ..     154     204 ..     133     218 .. 0.47

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0015
   TIGR00927  950 lnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeene 1004
                  + ++  +e  +++ G  ++++ +  d ee  +e+ e ++ee e   e ++e+e+e
  MMETSP1061-20121228|9085_1  154 IYTDGMDEYDDEDYGEYDNDNDNDNDDEEYYDEDYE-DQEEGE---EYNDEDEDE 204 
                  444444444444444333332222222222222222.222222...222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1481.88
//
Query:       MMETSP1061-20121228|9087_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 2009.83
//
Query:       MMETSP1061-20121228|9089_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0001   18.8   0.0      0.019   11.4   0.0    2.2  2  TIGR00764 lon_rel: putative ATP-dependent protease
     0.0016   15.4   0.1     0.0046   13.9   0.0    1.7  2  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0025   14.1   0.3      0.011   12.0   0.0    2.0  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
     0.0061   13.4   0.0      0.015   12.2   0.0    1.6  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0084   12.5   0.0       0.13    8.6   0.0    2.1  2  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0091   12.4   0.1      0.013   11.8   0.0    1.2  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
  ------ inclusion threshold ------
      0.031   10.3   0.0      0.048    9.7   0.0    1.2  1  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb


Domain annotation for each model (and alignments):
>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   3.3e-05     0.019      31      64 ..      34      67 ..      26      74 .. 0.79
   2 !    5.1   0.0    0.0025       1.5     208     249 ..      95     136 ..      87     180 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.3e-05
   TIGR00764 31 kkaakqkrnvlliGePGvGksmlakamaellpke 64
                ++  ++  ++lliG+PG+Gks + +  a l ++ 
  MMETSP1061-20121228|9089_1 34 QTRRRDMSHMLLIGDPGTGKSQVLRFAAALCSRS 67
                444556679************9999888887766 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.0025
   TIGR00764 208 veaGaihrahkGvlyideiatlslkvqqslltalqekkfpit 249
                 +eaGa+  a+kG+  ide   ++ + + ++  a+ ++ ++i+
  MMETSP1061-20121228|9089_1  95 LEAGALVLADKGICCIDEFGCIRNEDRTTIHEAMEQQTLSIA 136
                 689**********************************99996 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   7.8e-06    0.0046      29      67 ..      26      65 ..      20      78 .. 0.76
   2 ?   -2.2   0.0      0.61   3.6e+02     158     176 ..     266     285 ..     235     312 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 7.8e-06
   TIGR02881 29 ekrkeeglkaek.qvlhmifkGnPGtGkttvarllaklfk 67
                + r+++ +++ +    hm++ G+PGtGk+ v r  a l  
  MMETSP1061-20121228|9089_1 26 RARTNTSVQTRRrDMSHMLLIGDPGTGKSQVLRFAAALCS 65
                5566777776551567*****************9888754 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.61
   TIGR02881 158 flslnPGlks.rfpisldfp 176
                 +++ nPG +s  +p+++ f 
  MMETSP1061-20121228|9089_1 266 LVRSNPGQQSsAIPVTVRFL 285
                 45566766541466666664 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.17        97      28      49 ..      43      64 ..      35      78 .. 0.83
   2 !   12.0   0.0   1.8e-05     0.011     116     181 ..      93     158 ..      80     171 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.17
   TIGR02442 28 vlirGekGtaKstaaRaLaall 49
                +l+ G+ Gt+Ks + R  aal 
  MMETSP1061-20121228|9089_1 43 MLLIGDPGTGKSQVLRFAAALC 64
                7899**********99888776 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.8e-05
   TIGR02442 116 kafqpGlLaeahrgiLYiDEvNLLddhlvdvlLdaaasGvnrvEReGlsvshparfvLvgTmNpEE 181
                  a++ G L  a++gi  iDE   + ++   ++ +a+++ +  + + G+ ++  +r + ++ mNp  
  MMETSP1061-20121228|9089_1  93 FALEAGALVLADKGICCIDEFGCIRNEDRTTIHEAMEQQTLSIAKAGIVCKLNCRATVIAVMNPKN 158
                 47899***********************************************************76 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   2.5e-05     0.015      24     112 ..      34     135 ..      26     209 .. 0.58

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.5e-05
   TIGR00635  24 kkrkealdhvllyGPPGlGkttlakiiak.....elgvklkitsgpal...e.....kpgDlaailtaleegdvlfiDeihrlskaveellypamedfkldi 112
                 ++r+  + h+ll+G PG Gk  + +  a+      l + + +ts++           k+  l a    l ++ +  iDe   ++++   +++ ame+ +l i
  MMETSP1061-20121228|9089_1  34 QTRRRDMSHMLLIGDPGTGKSQVLRFAAAlcsrsVLTTGVGTTSAGLTcaaVregngKEFALEAGALVLADKGICCIDEFGCIRNEDRTTIHEAMEQQTLSI 135
                 678999***************987776651111135555666665532111211111222344444557777788888888888888888888888777765 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.03        17     213     232 ..      42      61 ..      22      69 .. 0.82
   2 !    8.6   0.0   0.00023      0.13     288     352 ..      97     161 ..      88     194 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.03
   TIGR00368 213 nllllGPPGsGktllakrlq 232
                  +ll+G PG+Gk  + + + 
  MMETSP1061-20121228|9089_1  42 HMLLIGDPGTGKSQVLRFAA 61 
                 589*********98777655 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00023
   TIGR00368 288 PGeislahnGvlfldellefkrkvldalrePledgeisisrakakilyParfqlvaamnpsPtGh 352
                  G + la +G+  +de    + +   ++ e +e++ +si++a        r +++a mnp  + +
  MMETSP1061-20121228|9089_1  97 AGALVLADKGICCIDEFGCIRNEDRTTIHEAMEQQTLSIAKAGIVCKLNCRATVIAVMNPKNCIY 161
                 58899*************************************99999*************99854 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   2.3e-05     0.013     311     338 ..      39      65 ..      17      73 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.3e-05
   TIGR03922 311 rskHlllaGPPGtGkttiArvvakiyaG 338
                    H+ll+G PGtGk  + r  a  ++ 
  MMETSP1061-20121228|9089_1  39 DMSHMLLIGDPGTGKSQVLRF-AAALCS 65 
                 357**************9985.445555 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   8.2e-05     0.048     335     382 ..      14      61 ..       4      71 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 8.2e-05
   TIGR03925 335 eaeerervllGleesdlapvaldfaeephllvlGdsesGktallraia 382
                 ++ +++r + + + +  + v    ++ +h+l +Gd ++Gk+++lr  a
  MMETSP1061-20121228|9089_1  14 NGGKKNRNATAKRARTNTSVQTRRRDMSHMLLIGDPGTGKSQVLRFAA 61 
                 5566677777788888899999999*******************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.35u 0.18s 00:00:00.53 Elapsed: 00:00:00.33
# Mc/sec: 1919.84
//
Query:       MMETSP1061-20121228|9088_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00033   16.2  26.4    0.00044   15.9  18.3    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    0.00034   16.3  30.2    0.00042   16.0  20.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9  18.3   2.1e-07   0.00044     251     479 ..      57     278 ..      49     282 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.1e-07
   TIGR02169 251 eeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleel.krleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeel 479
                 + + +  +++i++   ++++    le++++ + +  ++ q   +e+l +    ++ + r++++k +e+  a++++   +++ +++k+ +++ler+ e+++    +l++++  ++++ ++  a +++ +++ + +   +++++++le+ +        ++drl+ee  +++eee++++++ ++++++   +l++ + e +e++ + e k+e+ k   ++  +++ k +e +
  MMETSP1061-20121228|9088_1  57 TMSAASATSQISDSLTQYHRNVGILEKIAQSLLACQSGLQ---REELVQQYKTQNDVLRQLEAKLKEQILAQRERLANQSQTSSQKQALAKLERDFERVQSSVVALQSRVTRQRKQFQQRGAAAAAASASGDSSSSTHNKARTALEQQQM-----LVQQDRLQEEImREREEEIRKINQGMHQVNQIYRDLAHIVGEQQEHVDQIEDKMEESKTAAQSGLEQIHKANESY 278
                 5566778888888888888888889999888888666654...345555555566677888888888889999999999***************************************************99999999999999997653.....335788998852567788999999999999999999999999999999999999999988888777777776665 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0  20.9   2.1e-07   0.00042     734     948 ..      92     272 ..      50     284 .. 0.29

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.1e-07
   TIGR02168 734 kkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekas...leealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerls 948
                 ++ l+r e+ v+q++ + + l++  ++l+e++ +++e+l++++ +++ +++ +++le+++e+ ++++ al++++++++++++                                   ++ + +++++a+ ++ +++ ++++++le+ +  +++   +ee ++e++ee ++ ++ ++++++  ++l + + e++e++ q+e ++ee +   ++ +e++ 
  MMETSP1061-20121228|9088_1  92 QSGLQR-EELVQQYKTQNDVLRQLEAKLKEQILAQRERLANQS-QTSSQKQALAKLERDFERVQSSVVALQSRVTRQRKQFQ-----------------------------------QRGAAAAAASASGDSSSSTHNKARTALEQQQMLVQQdrlQEEIMREREEEIRKINQGMHQVNQIYRDLAHIVGEQQEHVDQIEDKMEESKTAAQSGLEQIH 272
                 222221.112222222222222222222222222222222221.22222222333333333333333333333333333333...................................22222222222222222222222222222111111100022223333333333333333333333333333333333333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       569  (0.138713); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 1456.96
//
Query:       MMETSP1061-20121228|9093_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 358.26
//
Query:       MMETSP1061-20121228|9091_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       463  (0.112872); expected 82.0 (0.02)
Passed bias filter:                      255  (0.0621648); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.38
# Mc/sec: 1729.75
//
Query:       MMETSP1061-20121228|9094_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2394.66
//
Query:       MMETSP1061-20121228|9090_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-94  312.2   0.0    1.4e-93  311.5   0.0    1.2  1  TIGR00501 met_pdase_II: methionine aminopeptidase, type II
    1.3e-28   97.6   2.3    1.6e-27   94.0   0.0    2.4  2  TIGR00495 crvDNA_42K: DNA-binding protein, 42 kDa
    9.6e-16   55.8   0.1    4.8e-15   53.6   0.0    1.9  2  TIGR00500 met_pdase_I: methionine aminopeptidase, type I


Domain annotation for each model (and alignments):
>> TIGR00501  met_pdase_II: methionine aminopeptidase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.5   0.0   9.9e-97   1.4e-93       9     294 ..     155     473 ..     145     474 .. 0.91

  Alignments for each domain:
  == domain 1    score: 311.5 bits;  conditional E-value: 9.9e-97
   TIGR00501   9 ikaG.kilkkvrreaaekivpGlkllevaefvenrirelGaeP......afPanisinevaahftpkagdetvlkdedvvkldlGahvdGyiadtaitvdlddqykellkaakdaletaikeiradvevgeiGkvieevies.........ygvkPisnLtGhslaryrlhagksipnvker..dttkleeGevlaiepfatdGvGlvtdggeveiyk..llae.rpvrlksarklLkkieenyktLPfakrylekl............edeklllalnkLvregviqdypvLkeksgslvaqfehtilveedgaevvt 294
                 ++ G +++++vr+ a+   +pG+kl ++   +en+ rel  e       +fP++ s+n+vaah+tp++gd+tvlk++dv+k+d+G++++G i+d+a+tv+++++y+ ll+a+k a++ +ik+ ++dv++ ++G++i+ev+es         y vk ++nL Ghs+a+y++hagks+p+vk +  ++ k+eeGe+ aie+f+++G+G+v +  e+++y   + a+  p+r++s++klL +i++ ++tL f++r+le+             ++ k+  al++L   g++q+yp+L +++g ++aq+ehti+++   +evv+
  MMETSP1061-20121228|9090_1 155 VRWGaEVHRQVRNYAQSLCKPGVKLADLCRQLENKNRELVQEAglergiGFPTGCSLNHVAAHYTPNPGDDTVLKYDDVMKVDFGVQIEGRIIDSAFTVSFNPRYDPLLEAVKCATDEGIKQSGIDVRLCDVGEAIQEVMESyeveldgttYPVKCCRNLNGHSIAPYQIHAGKSVPIVKGGcdESLKMEEGEIYAIETFGSTGRGYVLEDMECSHYMknFHAPhVPLRMQSSKKLLAHINKTFGTLAFCRRWLEREdggsatvngqngKQTKYMGALKNLCDVGIVQAYPPLCDVKGCYTAQYEHTIMMRPTCKEVVS 473
                 788889*******************************997774455567**********************************************************************************************************************************985327789*****************************6225666569***************************9863333333332224678999****************************************998 PP

>> TIGR00495  crvDNA_42K: DNA-binding protein, 42 kDa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   2.6     0.071        96     361     376 ..      51      66 ..      34      72 .. 0.62
   2 !   94.0   0.0   1.1e-30   1.6e-27      21     331 ..     153     471 ..     136     476 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.071
   TIGR00495 361 ikkkknkkkakkasaa 376
                  k+kk+kkk+kk++a+
  MMETSP1061-20121228|9090_1  51 KKRKKKKKKKKKTGAS 66 
                 2344445555555544 PP

  == domain 2    score: 94.0 bits;  conditional E-value: 1.1e-30
   TIGR00495  21 tkykiageiankvlkkvvekcksgakvvdiCekGdelikeetakvykkkkelekGiafPtavsvnnvvghfsPlksdelvlkeGdvvkidlGvhidGfialvahtivig.aeesvtGrkadviaaaslale...aalrlvkPGkkntevtevie..kvaasydcksveGvlshqlkrevidGekvvlskpsdsqkkevdkvefeenevyavdilvstgeGkakeederttiykkdedktyklklkasrkviseikkrfsalPftlrnlede............krar.lG.lvecvehkllqpyevlydkeGeivaqfkftvlllpnGsir 331
                  k + ++e+ ++v +   + ck+g+k+ d+C++    ++++  ++ ++   le+Gi fPt  s n v++h++P  +d++vlk  dv+k+d+Gv i+G i   a t+  +   +++      v +a++  ++   +  rl   G+  +ev e  e     ++y +k    +  h +  + i   k v  ++        + +++ee+e+ya++   stg G + e  e +   k  +  +  l++++s+k+  +i+k f++l f  r le e            k+++ +G l ++ + +++q+y+ l d +G+  aq++ t+++ p  ++ 
  MMETSP1061-20121228|9090_1 153 GKVRWGAEVHRQVRNYAQSLCKPGVKLADLCRQ----LENKNRELVQE-AGLERGIGFPTGCSLNHVAAHYTPNPGDDTVLKYDDVMKVDFGVQIEGRIIDSAFTVSFNpRYDPLLEA---VKCATDEGIKqsgIDVRLCDVGEAIQEVMESYEveLDGTTYPVKCCRNLNGHSIAPYQIHAGKSVPIVKGGC----DESLKMEEGEIYAIETFGSTGRGYVLEDMECSHYMKNFHAPHVPLRMQSSKKLLAHINKTFGTLAFCRRWLEREdggsatvngqngKQTKyMGaLKNLCDVGIVQAYPPLCDVKGCYTAQYEHTIMMRPTCKEV 471
                 567789999999999999*************97....55555555554.89****************************************************999887445555443...344444444411156788888888888888755114578899999999999999988887666664443333....368999******************98766666655555667889*************************999763333333333333444477578999***************************99987665 PP

>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   3.5e-18   4.8e-15      11     206 ..     154     358 ..     147     367 .. 0.86
   2 ?   -0.5   0.0      0.12   1.6e+02     223     236 ..     451     464 ..     448     473 .. 0.80

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 3.5e-18
   TIGR00500  11 klrkagelvaevlellerevkpGvstkeldkiakdfiekkgAksafkgykgfpgsvCiSvNevviHGipd...kkvlkdgDivniDvgveldGyygDtaktllvgkvseeaeklleatkealkkaieeikvgkrikeiskaiektaeekg.........fsvvkeytGHGiG.rklHeepeilnyakket.nvrlkeGmviaiEPmvnek 206
                 k+r  +e+ ++v++++++  kpGv++ +l +  ++  ++    +  +   gfp     S+N v +H  p+   ++vlk  D++++D+gv+++G   D+a+t+     +++ + llea+k a  ++i++     r+ ++++ai++ +e++           +  +++ GH i   ++H   +++  +   +  +++ eG + aiE + +++
  MMETSP1061-20121228|9090_1 154 KVRWGAEVHRQVRNYAQSLCKPGVKLADLCRQLENKNRELVQEAGLERGIGFPTG--CSLNHVAAHYTPNpgdDTVLKYDDVMKVDFGVQIEGRIIDSAFTVSF---NPRYDPLLEAVKCATDEGIKQSGIDVRLCDVGEAIQEVMESYEveldgttypVKCCRNLNGHSIApYQIHAGKSVPIVKGGCDeSLKMEEGEIYAIETFGSTG 358
                 7888999**********************999999988888888899999***64..6**********977679***************************976...689999******************************999887511111222235689*******7469********9887776699***********886665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.12
   TIGR00500 223 dkklsaqfEhtvvv 236
                 ++ ++aq+Eht+++
  MMETSP1061-20121228|9090_1 451 KGCYTAQYEHTIMM 464
                 56789******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 2175.54
//
Query:       MMETSP1061-20121228|9095_1  [L=888]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   13.5   0.4       0.73    5.7   0.1    2.3  2  TIGR00143 hypF: carbamoyltransferase HypF
  ------ inclusion threshold ------
      0.014   12.5   0.0      0.022   11.8   0.0    1.2  1  TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family
      0.048   10.6   0.0      0.075   10.0   0.0    1.2  1  TIGR03723 bact_gcp: putative glycoprotease GCP


Domain annotation for each model (and alignments):
>> TIGR00143  hypF: carbamoyltransferase HypF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.1   0.00053      0.73     470     503 ..     159     190 ..     143     195 .. 0.86
   2 !    5.4   0.0   0.00063      0.87     676     735 ..     436     491 ..     415     495 .. 0.77

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00053
   TIGR00143 470 lkvqHHfAHalavlaeaglleeavigialDGvGy 503
                 l+  HH AHa+++ ++a  +++ ++ +++DG+G 
  MMETSP1061-20121228|9095_1 159 LELSHHLAHAYSTATQAP-FDKGMV-VVMDGMGE 190
                 6789*********99999.777777.7*****96 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.00063
   TIGR00143 676 lvelileiaekagiekivisGGvfynkllleevakalkeegfellfpkelpagDggislG 735
                  ++++++  e +g+e + i+GGv  n +l  ++ ++l    f+  f + +p gD+gi++G
  MMETSP1061-20121228|9095_1 436 TIDFVKHFQEVTGEENLCIAGGVGLNSVLNGKLSRELG---FKKTFISPYP-GDDGIAVG 491
                 45667777888999*******************99887...6666666666.77788887 PP

>> TIGR00329  gcp_kae1: metallohydrolase, glycoprotease/Kae1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.6e-05     0.022     231     293 ..     421     481 ..     404     491 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.6e-05
   TIGR00329 231 lediaysfqeavidhliektkralkkkelkelvlaGGvsaNkrLrekleelleelnvefylpp 293
                   ++a ++q  + +  i+ +k+  + ++ ++l +aGGv  N+ L  kl+++l+ ++ +++++p
  MMETSP1061-20121228|9095_1 421 AISLAHRIQVDIEEITIDFVKHFQEVTGEENLCIAGGVGLNSVLNGKLSRELG-FK-KTFISP 481
                 5579999*****************************************99984.33.355544 PP

>> TIGR03723  bact_gcp: putative glycoprotease GCP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   5.5e-05     0.075     232     285 ..     421     474 ..     407     498 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 5.5e-05
   TIGR03723 232 kadiaasfqeavvdvlveklkralkktklktlvvaGGvaaNsalrekleelaek 285
                 +  +a  +q  + ++ ++ +k+  + t+ ++l++aGGv+ Ns l  kl++++  
  MMETSP1061-20121228|9095_1 421 AISLAHRIQVDIEEITIDFVKHFQEVTGEENLCIAGGVGLNSVLNGKLSRELGF 474
                 556888899999999999999999999********************9988633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.35
# Mc/sec: 3348.75
//
Query:       MMETSP1061-20121228|9098_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 653.35
//
Query:       MMETSP1061-20121228|9096_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-48  159.6   1.4      6e-48  159.3   0.9    1.1  1  TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I
    2.5e-19   67.4   0.2    3.4e-19   67.0   0.2    1.1  1  TIGR00403 ndhI: NADH-plastoquinone oxidoreductase, I subunit
    5.8e-11   39.7   3.8    7.8e-11   39.3   2.6    1.1  1  TIGR02512 FeFe_hydrog_A: [FeFe] hydrogenase, group A
    1.4e-10   38.7   3.1    2.3e-10   38.0   2.1    1.3  1  TIGR02700 flavo_MJ0208: archaeoflavoprotein, MJ0208 family
      4e-10   37.5   5.2    8.2e-10   36.5   3.6    1.5  1  TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
    1.1e-07   29.5  11.1    2.2e-05   21.9   0.7    2.2  2  TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit
    1.4e-06   25.0  11.7    4.6e-06   23.4   8.1    1.6  1  TIGR04105 FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
    3.9e-06   23.8   7.0      0.005   13.6   0.8    2.2  2  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
    9.9e-06   23.4   7.6     0.0012   16.5   0.1    2.1  2  TIGR02486 RDH: reductive dehalogenase
      2e-05   21.8   2.0    2.8e-05   21.3   1.4    1.2  1  TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein family
    4.4e-05   21.4  11.3      0.012   13.6   1.1    2.4  2  TIGR02936 fdxN_nitrog: ferredoxin III, nif-specific
    7.8e-05   19.2   4.7    0.00011   18.7   3.2    1.1  1  TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit
     0.0001   19.7   3.0    0.00017   18.9   2.1    1.3  1  TIGR04041 activase_YjjW: glycine radical enzyme activase, YjjW family
    0.00013   19.1   1.0    0.00018   18.6   0.7    1.2  1  TIGR04003 rSAM_BssD: [benzylsuccinate synthase]-activating enzyme
    0.00023   18.6   4.4    0.00032   18.1   3.0    1.1  1  TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family
    0.00029   17.7   2.1    0.00043   17.2   1.5    1.2  1  TIGR02912 sulfite_red_C: sulfite reductase, subunit C
    0.00031   17.7   6.2     0.0013   15.7   4.6    1.6  2  TIGR02066 dsrB: sulfite reductase, dissimilatory-type beta subunit
     0.0012   16.7   9.5      0.065   11.1   0.7    2.2  2  TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B
     0.0019   14.5   8.2     0.0037   13.6   5.7    1.3  1  TIGR03287 methan_mark_16: putative methanogenesis marker 16 metalloprotein
     0.0019   16.2   8.2      0.023   12.8   0.7    2.4  2  TIGR03048 PS_I_psaC: photosystem I iron-sulfur protein PsaC
     0.0021   15.8   7.1      0.014   13.1   5.2    1.8  2  TIGR00402 napF: ferredoxin-type protein NapF
     0.0027   15.4   6.1     0.0061   14.3   4.3    1.5  1  TIGR02060 aprB: adenylylsulfate reductase, beta subunit
     0.0035   14.5   7.5       0.12    9.5   0.8    2.2  2  TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein
     0.0072   13.7   6.2      0.018   12.4   4.3    1.6  1  TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein
     0.0073   13.9   7.4      0.014   13.0   5.1    1.4  1  TIGR03294 FrhG: coenzyme F420 hydrogenase, subunit gamma
     0.0093   12.1   8.2      0.018   11.2   5.7    1.4  1  TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
     0.0094   12.7   7.0       0.12    9.1   4.8    2.0  1  TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG
  ------ inclusion threshold ------
       0.01   11.4   5.3      0.018   10.7   3.7    1.3  1  TIGR00314 cdhA: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
      0.013   12.5  11.5      0.023   11.6   0.6    2.1  2  TIGR00276 TIGR00276: putative iron-sulfur cluster-binding protein
      0.061    8.5   1.7      0.077    8.2   1.2    1.0  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
      0.069   10.4  11.9      0.065   10.5   0.9    2.1  2  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
       0.25    8.2  10.6       0.17    8.8   1.3    2.1  2  TIGR01582 FDH-beta: formate dehydrogenase, beta subunit
       0.28    7.7   7.9       0.62    6.6   5.5    1.5  1  TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
       0.61    8.4   7.5        1.5    7.2   0.5    2.3  2  TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding domain
       0.71    5.4   7.8        3.6    3.0   5.4    1.8  1  TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase
        1.1    6.2  10.1        1.4    5.9   1.3    2.1  2  TIGR02910 sulfite_red_A: sulfite reductase, subunit A
        6.6    3.3  10.4       0.23    8.1   1.1    2.3  3  TIGR00273 TIGR00273: iron-sulfur cluster-binding protein


Domain annotation for each model (and alignments):
>> TIGR01971  NuoI: NADH-quinone oxidoreductase, chain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.3   0.9   5.4e-50     6e-48       2     121 .]      77     197 ..      76     197 .. 0.97

  Alignments for each domain:
  == domain 1    score: 159.3 bits;  conditional E-value: 5.4e-50
   TIGR01971   2 lvltlkylfskkvtlqYPeeklalspryrgrivlkrdp.GeekCiaCelCakvCpaeaikvvkaeeekgkrrlkkyeinlgrCifCglCeevCPtdaivltkefelaseerkdlvyekeel 121
                 l l+l+   ++kvt++YP+e+ +lspr+rg+++l+r+p G+e+Ci+C+lC+++Cpa+ai+++++ +e+g rr+++y+i++++Ci+Cg+C+e+CP+daiv+++++e+a+e++++l y+ke+l
  MMETSP1061-20121228|9096_1  77 LSLALEVGLKPKVTINYPYERGYLSPRFRGEHALRRYPtGDERCISCKLCEAICPAQAITIEAETREDGARRTTRYDIDMSKCIYCGFCQEACPVDAIVEGPNYEFATETHEELLYDKEKL 197
                 6677788899************************************************************************************************************987 PP

>> TIGR00403  ndhI: NADH-plastoquinone oxidoreductase, I subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.2   3.1e-21   3.4e-19      22     140 ..      73     195 ..      61     207 .. 0.87

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 3.1e-21
   TIGR00403  22 igqgllvtldhmnrlpitiqypyeklipserfrgrihfef.....dkciacevcvrvcpinlpvvdwelekaikkkelknysidfgvcifcgncveycptnclsmteeyelstydrhelnydqi 140
                 i +gl ++l+   +  +ti+ypye+   s rfrg   +       ++ci+c++c  +cp +   ++ e + +  ++   +y id+  ci+cg c e cp + +    +ye++t    el yd+ 
  MMETSP1061-20121228|9096_1  73 IARGLSLALEVGLKPKVTINYPYERGYLSPRFRGEHALRRyptgdERCISCKLCEAICPAQAITIEAETREDGARR-TTRYDIDMSKCIYCGFCQEACPVDAIVEGPNYEFATETHEELLYDKE 195
                 6778888888888889******************7554321223279*********************99998776.578*****************************************975 PP

>> TIGR02512  FeFe_hydrog_A: [FeFe] hydrogenase, group A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   2.6   7.1e-13   7.8e-11       7      73 ..     118     180 ..     115     197 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 7.1e-13
   TIGR02512   7 skCilCerCvkaCekvqevkalkalneklktevatkleklldeseCisCGqCvlvCpvgaitekdev 73 
                 ++Ci C+ C ++C  ++++ + ++ + +       +++  +d+s+Ci+CG C  +Cpv+ai e  + 
  MMETSP1061-20121228|9096_1 118 ERCISCKLCEAICPAQAITIEAETREDG----ARRTTRYDIDMSKCIYCGFCQEACPVDAIVEGPNY 180
                 69*************9998444333333....345677789999*****************997654 PP

>> TIGR02700  flavo_MJ0208: archaeoflavoprotein, MJ0208 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   2.1     2e-12   2.3e-10     144     202 ..     114     182 ..     107     189 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 2e-12
   TIGR02700 144 aidrkkcklcekcvdacpreais.....kkdgv...v..eirllkclGcGkckevcpynaikgGkevev 202
                     ++c  c+ c   cp +ai+     ++dg    +  +i+++kc+ cG c+e+cp +ai +G ++e 
  MMETSP1061-20121228|9096_1 114 PTGDERCISCKLCEAICPAQAITieaetREDGArrtTryDIDMSKCIYCGFCQEACPVDAIVEGPNYEF 182
                 55679****************9632322234322212348************************99986 PP

>> TIGR02179  PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   3.6   7.4e-12   8.2e-10      24      73 ..     117     175 ..     106     179 .. 0.90

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 7.4e-12
   TIGR02179  24 kekCikCklCvlyCpeaaikekeek.........kveidYdyCkGCgiCaeeCpvkaie 73 
                 +e+Ci+CklC + Cp +ai+ + e+          ++id + C  Cg C e Cpv+ai 
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQAITIEAETredgarrttRYDIDMSKCIYCGFCQEACPVDAIV 175
                 79***************999887777899999988999999****************95 PP

>> TIGR01944  rnfB: electron transport complex, RnfABCDGE type, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   1.6   6.3e-05     0.007     143     168 ..     118     143 ..     115     156 .. 0.79
   2 !   21.9   0.7     2e-07   2.2e-05     110     135 ..     154     179 ..     142     185 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.3e-05
   TIGR01944 143 dlCtgCdlCvepCPvdcielrpvaee 168
                 + C++C+lC + CP ++i+++ ++ e
  MMETSP1061-20121228|9096_1 118 ERCISCKLCEAICPAQAITIEAETRE 143
                 57999999999999999999888654 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 2e-07
   TIGR01944 110 ideeeCiGCtkCiqaCPvDaivGaak 135
                 id  +Ci C  C +aCPvDaiv +++
  MMETSP1061-20121228|9096_1 154 IDMSKCIYCGFCQEACPVDAIVEGPN 179
                 8899******************9887 PP

>> TIGR04105  FeFe_hydrog_B1: [FeFe] hydrogenase, group B1/B3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   8.1   4.2e-08   4.6e-06     142     207 ..     118     176 ..     111     181 .. 0.67

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 4.2e-08
   TIGR04105 142 ekCieCGkCkkaCpYnAivelerPCekaCpvkAissdekkkaeidedkCisCGaCvaaCPFgaisd 207
                 e+Ci+C  C++ Cp +Ai+      e           ++++ +id +kCi CG C +aCP  ai++
  MMETSP1061-20121228|9096_1 118 ERCISCKLCEAICPAQAITIEAETRE-------DGARRTTRYDIDMSKCIYCGFCQEACPVDAIVE 176
                 67777777777777777764432222.......223455667788888888888888888888765 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.8   4.5e-05     0.005       9      30 ..     117     138 ..     110     143 .. 0.87
   2 !   13.5   0.4   4.9e-05    0.0055       6      29 ..     153     176 ..     149     188 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.5e-05
   TIGR03224   9 peicircntceetcpidaithd 30 
                  e ci c  ce++cp +ait +
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQAITIE 138
                 588****************976 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 4.9e-05
   TIGR03224   6 lidpeicircntceetcpidaith 29 
                  id   ci c  c+e cp+dai  
  MMETSP1061-20121228|9096_1 153 DIDMSKCIYCGFCQEACPVDAIVE 176
                 589999****************85 PP

>> TIGR02486  RDH: reductive dehalogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   2.2    0.0015      0.17     207     230 ..     120     143 ..     117     158 .. 0.82
   2 !   16.5   0.1   1.1e-05    0.0012     207     258 ..     159     211 ..     153     216 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0015
   TIGR02486 207 CetCgkCAdeCPsqaIskekeptw 230
                 C +C+ C   CP+qaI+ e+e++ 
  MMETSP1061-20121228|9096_1 120 CISCKLCEAICPAQAITIEAETRE 143
                 99***************9998744 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 1.1e-05
   TIGR02486 207 CetCgkCAdeCPsqaIskekeptwdveaaek.kesgennpkkkwqydgkkckl 258
                 C  Cg C ++CP++aI ++++  +  e +e+  +++e+   +  +++++ +k+
  MMETSP1061-20121228|9096_1 159 CIYCGFCQEACPVDAIVEGPNYEFATETHEElLYDKEKLLSNGDKWEKQIAKN 211
                 999*****************977777776777788888888877777776665 PP

>> TIGR02494  PFLE_PFLC: glycyl-radical enzyme activating protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   1.4   2.6e-07   2.8e-05      48      98 ..     118     175 ..     112     201 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.6e-07
   TIGR02494  48 ekClecgkCvevceae.......elveaaeskkaisierekceecgkcveaCpseAle 98 
                 e+C++c+ C+++c+a+       +  + a+++++ +i+  kc  cg c+eaCp +A+ 
  MMETSP1061-20121228|9096_1 118 ERCISCKLCEAICPAQaitieaeTREDGARRTTRYDIDMSKCIYCGFCQEACPVDAIV 175
                 79*************9775533222223344566788999***************985 PP

>> TIGR02936  fdxN_nitrog: ferredoxin III, nif-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   1.8   0.00018      0.02      69      89 ..     117     137 ..     113     139 .. 0.89
   2 !   13.6   1.1   0.00011     0.012       6      37 ..     144     173 ..     139     214 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00018
   TIGR02936  69 eenCiGCeaCarvCpkkcyth 89 
                 +e+Ci C+ C+ +Cp ++ t 
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQAITI 137
                 689**************9986 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 0.00011
   TIGR02936   6 dgkewvpkyvesideekCigCgrCfkvCgrdv 37 
                 dg++ + +y  +id +kCi Cg C  +C+ d 
  MMETSP1061-20121228|9096_1 144 DGARRTTRY--DIDMSKCIYCGFCQEACPVDA 173
                 555556655..799999*******99999875 PP

>> TIGR01945  rnfC: electron transport complex, RnfABCDGE type, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   3.2   9.8e-07   0.00011     362     417 ..     117     172 ..     108     185 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 9.8e-07
   TIGR01945 362 ekaCirCgkCveaCPvsLlPqqlallakaeeydeaeelnlmDCieCGsCayvCPsk 417
                 ++ Ci+C  C   CP++ +  + +++       +  + ++  Ci CG C   CP +
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQAITIEAETREDGARRTTRYDIDMSKCIYCGFCQEACPVD 172
                 578**************9999999999888999999999***************76 PP

>> TIGR04041  activase_YjjW: glycine radical enzyme activase, YjjW family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   2.1   1.5e-06   0.00017      37      87 ..     114     174 ..     111     195 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.5e-06
   TIGR04041  37 PetinkCksCgeCveeCpagalsled..........gkvvwdkekCveCdeCikvCkkkss 87 
                 P+  ++C sC+ C + Cpa+a+++e            +   d +kC+ C  C ++C+ ++ 
  MMETSP1061-20121228|9096_1 114 PTGDERCISCKLCEAICPAQAITIEAetredgarrtTRYDIDMSKCIYCGFCQEACPVDAI 174
                 667789*****************988778888775445566789************98875 PP

>> TIGR04003  rSAM_BssD: [benzylsuccinate synthase]-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.7   1.6e-06   0.00018      49     101 ..     117     174 ..     105     201 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.6e-06
   TIGR04003  49 edrcvgcgrcvavcsagtsrlvdn....sdgr.tivevdrtdcqrclrcvaacltear 101
                 ++rc+ c  c a+c+a++ ++  +    + +r t  ++d ++c  c  c  ac  +a 
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQAITIEAEtredGARRtTRYDIDMSKCIYCGFCQEACPVDAI 174
                 68**************9988754311112333155789***************99985 PP

>> TIGR02163  napH_: ferredoxin-type protein, NapH/MauN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   3.0   2.9e-06   0.00032     200     251 ..     117     174 ..     106     176 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.9e-06
   TIGR02163 200 kekCdkCmdClevCpekqvlelalkk......eestlvlsgdCisCgrCidvCeedvl 251
                  e+C  C  C ++Cp + +   a  +      +    +    Ci Cg C ++C+ d++
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQAITIEAETRedgarrTTRYDIDMSKCIYCGFCQEACPVDAI 174
                 689************998754444333677666677899999************9986 PP

>> TIGR02912  sulfite_red_C: sulfite reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.5   3.9e-06   0.00043     168     219 ..     117     175 ..     109     187 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.9e-06
   TIGR02912 168 adrcvgcgacvkvckkkavgalslenykvvr.......eeekcigcgecvlkcptgawt 219
                  +rc++c+ c   c  +a+   + +     r       + +kci cg c ++cp  a  
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQAITIEAETREDGARrttrydiDMSKCIYCGFCQEACPVDAIV 175
                 589************99987665443333321111333679*************99865 PP

>> TIGR02066  dsrB: sulfite reductase, dissimilatory-type beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.6     0.013       1.4     212     232 ..     116     136 ..      98     146 .. 0.81
   2 !   15.7   4.6   1.1e-05    0.0013     187     233 ..     124     176 ..     117     185 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.013
   TIGR02066 212 deekcilcGncytncpaldla 232
                  +e+ci c  c   cpa  ++
  MMETSP1061-20121228|9096_1 116 GDERCISCKLCEAICPAQAIT 136
                 579*************97765 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 1.1e-05
   TIGR02066 187 PlvvaacPtaalkpke......ekekkslevdeekcilcGncytncpaldlad 233
                  l  a cP+ a++ ++       +++++ ++d  kci+cG c++ cp   + +
  MMETSP1061-20121228|9096_1 124 KLCEAICPAQAITIEAetredgARRTTRYDIDMSKCIYCGFCQEACPVDAIVE 176
                 556689******997433443333456789****************9766655 PP

>> TIGR02951  DMSO_dmsB: dimethylsulfoxide reductase, chain B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.7   0.00059     0.065      94     118 ..     117     141 ..     113     148 .. 0.87
   2 !   10.2   1.3    0.0011      0.13      92     111 ..     154     173 ..     143     187 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00059
   TIGR02951  94 qdkciGckycalacpygapqyeeek 118
                 +++ci ck c+  cp +a  +e+e+
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQAITIEAET 141
                 689**************99888775 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0011
   TIGR02951  92 vdqdkciGckycalacpyga 111
                 +d +kci c  c+ acp +a
  MMETSP1061-20121228|9096_1 154 IDMSKCIYCGFCQEACPVDA 173
                 7899*************998 PP

>> TIGR03287  methan_mark_16: putative methanogenesis marker 16 metalloprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   5.7   3.3e-05    0.0037     297     347 ..     113     174 ..     106     179 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.3e-05
   TIGR03287 297 vkynperClnCkvClveekCPveaikk.............dkeldtedCfgCGvCaeiCpsgvv 347
                   + +erC+ Ck C+    CP +ai                 ++d  +C  CG+C+e Cp +++
  MMETSP1061-20121228|9096_1 113 YPTGDERCISCKLCE--AICPAQAITIeaetredgarrttRYDIDMSKCIYCGFCQEACPVDAI 174
                 456789********6..58****9975455666655554444677889************8875 PP

>> TIGR03048  PS_I_psaC: photosystem I iron-sulfur protein PsaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.7    0.0002     0.023      45      74 ..     118     147 ..     113     153 .. 0.84
   2 ?    7.0   0.8     0.013       1.5       9      25 ..     158     174 ..     153     180 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.0002
   TIGR03048  45 edcvGckrcesacptdflsvrvylgaettr 74 
                 e c+ ck ce+ cp++ +++    +++ +r
  MMETSP1061-20121228|9096_1 118 ERCISCKLCEAICPAQAITIEAETREDGAR 147
                 78***************9998887777666 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.013
   TIGR03048   9 tciGctqcvracptdvl 25 
                  ci c  c  acp+d++
  MMETSP1061-20121228|9096_1 158 KCIYCGFCQEACPVDAI 174
                 69999999999999975 PP

>> TIGR00402  napF: ferredoxin-type protein NapF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.8     0.038       4.3     130     149 .]     117     136 ..     108     136 .. 0.85
   2 !   13.1   5.2   0.00013     0.014      36      85 ..     119     175 ..     116     191 .. 0.63

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.038
   TIGR00402 130 selcngcgeckiscfvaait 149
                 +e+c  c  c++ c+  ait
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQAIT 136
                 68999999999999999997 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 0.00013
   TIGR00402  36 rCtrCgeCisaCennilq.....kgdag..ypevefdnaeCslCgkCaeaCpeslls 85 
                 rC  C  C ++C+++ +      ++d+    +  ++d ++C +Cg C eaCp +++ 
  MMETSP1061-20121228|9096_1 119 RCISCKLCEAICPAQAITieaetREDGArrTTRYDIDMSKCIYCGFCQEACPVDAIV 175
                 688888888888887765222212222211445677888888888888888877653 PP

>> TIGR02060  aprB: adenylylsulfate reductase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   4.3   5.5e-05    0.0061       8      72 ..     118     184 ..     112     198 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.5e-05
   TIGR02060   8 ekcdgckalektacvyicpndlmtldkekrk.......aynrepdmcwecyscvkicpqgaidvrgyadfap 72 
                 e+c  ck      c+ icp++ +t+++e+r         y+++   c  c  c  +cp +ai   +  +fa 
  MMETSP1061-20121228|9096_1 118 ERCISCK-----LCEAICPAQAITIEAETREdgarrttRYDIDMSKCIYCGFCQEACPVDAIVEGPNYEFAT 184
                 6888898.....9************988753222222259999999****************9888888876 PP

>> TIGR03149  cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.4    0.0023      0.26     124     148 ..     117     141 ..     113     146 .. 0.85
   2 !    9.5   0.8    0.0011      0.12     117     140 ..     149     172 ..     145     187 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0023
   TIGR03149 124 kekcvgcqyclaacpyrvrfinpvk 148
                 +e+c+ c+ c a+cp +   i+ ++
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQAITIEAET 141
                 689************9988777665 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0011
   TIGR03149 117 tgivdvdkekcvgcqyclaacpyr 140
                 t   d+d +kc+ c++c  acp  
  MMETSP1061-20121228|9096_1 149 TTRYDIDMSKCIYCGFCQEACPVD 172
                 556799****************76 PP

>> TIGR00397  mauM_napG: MauM/NapG family ferredoxin-type protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   4.3   0.00016     0.018     138     189 ..     120     171 ..     113     179 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00016
   TIGR00397 138 glncsicvrvcpirgeaislkpiknergllqipvvdsakctgcgtcekhcvl 189
                  ++c +c  +cp +  +i  +  +   ++     +d +kc  cg c+  c +
  MMETSP1061-20121228|9096_1 120 CISCKLCEAICPAQAITIEAETREDGARRTTRYDIDMSKCIYCGFCQEACPV 171
                 679*********9999999999999999999999*************99965 PP

>> TIGR03294  FrhG: coenzyme F420 hydrogenase, subunit gamma
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   5.1   0.00012     0.014     175     218 ..     119     172 ..     115     183 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00012
   TIGR03294 175 lcmGcGtcaaacptraielv.....dG.....rpevnkdlcikcGacyvqcpra 218
                  c+ c  c a cp++ai+++     dG     r +++  +ci cG c  +cp  
  MMETSP1061-20121228|9096_1 119 RCISCKLCEAICPAQAITIEaetreDGarrttRYDIDMSKCIYCGFCQEACPVD 172
                 59***************9963333344433336679999*************65 PP

>> TIGR03336  IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   5.7   0.00016     0.018     542     595 .]     110     174 ..     100     174 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00016
   TIGR03336 542 avklkvdeekCikCkkCikelgCPa..ie..........eedkevvidkl.CsgCgvCvqvCpvdai 595
                  +++   +e+Ci+Ck C     CPa  i+          ++  +  id + C+ Cg C + Cpvdai
  MMETSP1061-20121228|9096_1 110 LRRYPTGDERCISCKLCEA--ICPAqaITieaetredgaRRTTRYDIDMSkCIYCGFCQEACPVDAI 174
                 567788899********76..899733335565433322233456799999***************8 PP

>> TIGR02745  ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   4.8    0.0011      0.12     204     267 ..      90     169 ..      86     181 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.0011
   TIGR02745 204 ivvYdekRGeargdrkkkkdakaegklgd..CvdCeaCvqvCPtg.iDI....R.dGlQ....l.....eCInCaeCiDAC 267
                 ++ Y ++RG      +++++ ++  ++gd  C++C++C ++CP+  i I    R dG      +     +CI C+ C +AC
  MMETSP1061-20121228|9096_1  90 TINYPYERGYLSPRFRGEHALRRY-PTGDerCISCKLCEAICPAQaITIeaetReDGARrttrYdidmsKCIYCGFCQEAC 169
                 678999999765544444444443.455555************75366543442345432222222223699999999999 PP

>> TIGR00314  cdhA: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   3.7   0.00016     0.018     399     453 ..     118     173 ..     115     208 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00016
   TIGR00314 399 kkctecgnctlacp.nslrvkealakakkGdl..skleeleelclacgrceqvcpkni 453
                 ++c  c  c+  cp +++ ++      ++G +  +++   + +c+ cg c+++cp + 
  MMETSP1061-20121228|9096_1 118 ERCISCKLCEAICPaQAITIEAET--REDGARrtTRYDIDMSKCIYCGFCQEACPVDA 173
                 58************4455555444..44554400455555899***********9764 PP

>> TIGR00276  TIGR00276: putative iron-sulfur cluster-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   2.5     0.011       1.2     158     177 ..     117     136 ..     111     157 .. 0.81
   2 ?   11.6   0.6   0.00021     0.023     160     179 ..     158     177 ..     151     204 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.011
   TIGR00276 158 eerCgkCtkCldaCptqAlv 177
                 +erC +C+ C  +Cp qA+ 
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQAIT 136
                 689***************96 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 0.00021
   TIGR00276 160 rCgkCtkCldaCptqAlvep 179
                 +C  C+ C +aCp +A+ve 
  MMETSP1061-20121228|9096_1 158 KCIYCGFCQEACPVDAIVEG 177
                 7999**************94 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   1.2   0.00069     0.077     881     937 ..     118     173 ..      98     178 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00069
   TIGR03315 881 erclecsyvcekcvdvcPnranisiav...agfrdkfqivhld.amcnecGncatfcPydg 937
                 erc++    c+ c  +cP +a i+i+     +   ++    +d + c  cG c++ cP d+
  MMETSP1061-20121228|9096_1 118 ERCIS----CKLCEAICPAQA-ITIEAetrEDGARRTTRYDIDmSKCIYCGFCQEACPVDA 173
                 67766....578999****98.666663122222233344566457************885 PP

>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   2.0     0.015       1.7     141     157 ..     119     135 ..     110     155 .. 0.88
   2 ?   10.5   0.9   0.00059     0.065     138     158 ..     155     175 ..     137     194 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.015
   TIGR00384 141 eCieCglCyssCpakkl 157
                 +Ci+C lC + Cpa++ 
  MMETSP1061-20121228|9096_1 119 RCISCKLCEAICPAQAI 135
                 7************9865 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00059
   TIGR00384 138 elseCieCglCyssCpakkln 158
                 ++s+Ci Cg C  +Cp+ + +
  MMETSP1061-20121228|9096_1 155 DMSKCIYCGFCQEACPVDAIV 175
                 799************987654 PP

>> TIGR01582  FDH-beta: formate dehydrogenase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   1.2     0.037       4.1     124     140 ..     118     134 ..     115     146 .. 0.72
   2 ?    8.8   1.3    0.0015      0.17     120     139 ..     153     172 ..     147     183 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.037
   TIGR01582 124 ekcigcgyciagcpfni 140
                 e+ci c++c a cp + 
  MMETSP1061-20121228|9096_1 118 ERCISCKLCEAICPAQA 134
                 67888888888888665 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.0015
   TIGR01582 120 dfdhekcigcgyciagcpfn 139
                 d+d +kci cg+c   cp +
  MMETSP1061-20121228|9096_1 153 DIDMSKCIYCGFCQEACPVD 172
                 77888888888888888876 PP

>> TIGR03379  glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.5    0.0056      0.62       5      69 ..     118     174 ..     114     202 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0056
   TIGR03379   5 escikctvctvvcpvakanplypgpkqagpdgerlrlksaelydealkyctnckrcevacpsdvk 69 
                 e+ci c  c ++cp            ++  dg r     +  yd  +  c+ c  c+ acp d  
  MMETSP1061-20121228|9096_1 118 ERCISCKLCEAICPAQAITI----EAETREDGARR----TTRYDIDMSKCIYCGFCQEACPVDAI 174
                 79************866544....45677899884....5679******************9864 PP

>> TIGR04085  rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   0.5     0.013       1.5      56      86 ..     115     142 ..      96     150 .. 0.75
   2 ?    4.8   0.7     0.073       8.1      62      82 ..     157     177 ..     146     187 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.013
   TIGR04085  56 lekeeCkkCkalplCgGgCpaealeeegdle 86 
                 + +e+C +Ck   lC+  Cpa+a++ e +++
  MMETSP1061-20121228|9096_1 115 TGDERCISCK---LCEAICPAQAITIEAETR 142
                 5678888886...7********998866555 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.073
   TIGR04085  62 kkCkalplCgGgCpaealeee 82 
                 +kC +  +C+  Cp +a+ e 
  MMETSP1061-20121228|9096_1 157 SKCIYCGFCQEACPVDAIVEG 177
                 5899999********998764 PP

>> TIGR02176  pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   5.4     0.033       3.6     683     754 ..     118     172 ..     113     214 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.033
   TIGR02176 683 dkciqcnqcafvcPhaairavlldeeelekapegfksldakgkeleglkyriqvsvedctGcglcvdicPak 754
                 ++ci c+ c  +cP  ai + + + e+ ++                 ++y i +    c+ cg c ++cP  
  MMETSP1061-20121228|9096_1 118 ERCISCKLCEAICPAQAITIEAETREDGAR---------------RTTRYDIDM--SKCIYCGFCQEACPVD 172
                 799999999999999999876544433222...............235666655..5699999999999977 PP

>> TIGR02910  sulfite_red_A: sulfite reductase, subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   1.3     0.012       1.4     219     236 ..     117     134 ..     108     152 .. 0.83
   2 ?    4.6   1.2     0.031       3.5     218     234 ..     155     171 ..     147     177 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.012
   TIGR02910 219 dsrciacGrcntvcptct 236
                 d+rci+c  c+ +cp+ +
  MMETSP1061-20121228|9096_1 117 DERCISCKLCEAICPAQA 134
                 89*************865 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.031
   TIGR02910 218 ydsrciacGrcntvcpt 234
                   s+ci cG c+ +cp 
  MMETSP1061-20121228|9096_1 155 DMSKCIYCGFCQEACPV 171
                 45899999999999996 PP

>> TIGR00273  TIGR00273: iron-sulfur cluster-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.7      0.52        57     294     307 ..     119     132 ..     113     139 .. 0.86
   2 ?    8.1   1.1    0.0021      0.23     292     314 ..     156     178 ..     144     185 .. 0.79
   3 ?   -2.0   0.0       2.4   2.7e+02      41      61 ..     193     213 ..     177     215 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.52
   TIGR00273 294 aCirCgaClneCPv 307
                 +Ci C  C   CP+
  MMETSP1061-20121228|9096_1 119 RCISCKLCEAICPA 132
                 79999999999997 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0021
   TIGR00273 292 vlaCirCgaClneCPvyrkiGgh 314
                 + +Ci Cg C+  CPv   + g 
  MMETSP1061-20121228|9096_1 156 MSKCIYCGFCQEACPVDAIVEGP 178
                 558************97776665 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 2.4
   TIGR00273  41 iklkvlenldaylekleenvt 61 
                  k+k+l+n d++ +++++n+ 
  MMETSP1061-20121228|9096_1 193 DKEKLLSNGDKWEKQIAKNLM 213
                 489999******999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        37  (0.00901999); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 0.39u 0.12s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 705.01
//
Query:       MMETSP1061-20121228|9097_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-77  256.7  21.6    6.9e-40  134.8   8.4    2.4  2  TIGR00846 caca2: calcium/proton exchanger
    3.2e-76  254.6  17.2    1.1e-38  131.2   7.6    2.3  2  TIGR00378 cax: calcium/proton exchanger
    2.9e-14   50.7   0.8    9.3e-09   32.6   0.0    2.2  2  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog


Domain annotation for each model (and alignments):
>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.6   1.4   1.5e-40   2.1e-37      10     234 ..      60     298 ..      53     305 .. 0.79
   2 !  134.8   8.4   5.1e-43   6.9e-40     218     372 .]     506     660 ..     490     660 .. 0.94

  Alignments for each domain:
  == domain 1    score: 126.6 bits;  conditional E-value: 1.5e-40
   TIGR00846  10 vllaskleilliavplaiilalvg.vsqtlvfllallgiiplAavvsrateeLaarlGetlGgllnatvgnavelIisllalkegkvevvrasllgsilsnlllvlGlslllGGiknirveqefdlkaaqvnlallllailslvlPallkaa...knseksa...evqd.s.........klelsvgiaivllilYvvfLvfqlvtHrelFeaeeead..sevddevkeeptvlsslsaailLv 234
                  +l+ kl+ ll+  p+a++   +g + +tl f+++ +++ip A+++s+ te++a+++  t+G+llnat+gna el+i+  al++g  +vv+ ++lgs+l+nll v G+s l+GG+++    qe  ++  +v +++lll ++  +lPa l  +    n+++++   e+ + +         +l+  ++ a v++++Y+ +Lvfql tH+e F++ e     s+  +++ e+p         ++Lv
  MMETSP1061-20121228|9097_1  60 LVLNHKLNWLLVLGPVALMGDATGfLGETLCFAFSGMALIPCAERLSFVTEQVAMHTNGTIGALLNATFGNAPELLIASAALRKGFYRVVQLAMLGSMLTNLLFVFGISCLIGGLRWQ--VQELRITSGNVSVGMLLLSTAGSLLPATLVLGgqlRNGSANDgeaETSSlMiaagqptveELQFCRVNAFVMILMYGCYLVFQLGTHKEEFDEHEPCSsdSPHLTPHPETP---QRNLFCVWLV 298
                 689999*******9999998887735799***************************************************************************************94..6*************************988643111233222210022222211111111145667889***********************99886540044555555555...3333445555 PP

  == domain 2    score: 134.8 bits;  conditional E-value: 5.1e-43
   TIGR00846 218 keeptvlsslsaailLvvativvallaellvstlesvveslglskafiglilipivgnaaEhvtavivalknkldialgvalGSalqiallvvplvvlvawilgieldLnlealelvalvlsvlltaitlqdGrsnyleGavlLalyviialaff 372
                 +  + ++s+ +++++L++ t+ +++++++lv+t++  + ++ +s+ f+++i++p   n aE v+a+++a +n +d+ +gv +GSa+q+a+lv p +v+++w+++++++L ++a e+v+++ +v+++a++lq G++n+l Ga+ + +yv++a  f+
  MMETSP1061-20121228|9097_1 506 SALEVQMSFRVGILWLFIITLGISAMSDILVNTIDGFAIRMHFSEVFTSMIIVPFFSNVAEQVSAILFAYRNEMDLCVGVTVGSAIQVASLVLPGCVIIGWMVDRSMTLYFHAYETVCIFFAVIVIAAVLQGGTTNWLVGATCISVYVMMATGFW 660
                 34445799***********************************************************************************************************************************************9997 PP

>> TIGR00378  cax: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   0.3   1.6e-40   2.2e-37       1     200 [.      69     288 ..      69     311 .. 0.89
   2 !  131.2   7.6     8e-42   1.1e-38     192     349 .]     499     660 ..     484     660 .. 0.92

  Alignments for each domain:
  == domain 1    score: 126.9 bits;  conditional E-value: 1.6e-40
   TIGR00378   1 llvfvPlsliasllq.lsetvvfllaflaiiplaaflgrateelavvaGpriGGllnatfGnavelivslialkeGlveivkasltGsvlgnlllvlGlafflGGlkykeqefnqlaarlnssllalavvalliPaal...evlsvGvee.................akllnlsvgvsivlilvyvlalyfklgthralyevqeaeqtevmeeiedePehs 200
                 llv+ P++l+++  + l+et+ f++ ++a+ip a  l+  te++a+    +iG llnatfGna el+++  al++G  ++v+ +++Gs+l+nll+v G++ ++GGl+ + qe+++++ +   ++l l+ +  l+Pa+l     l  G  +                  + l++ +  + v+il+y   l+f+lgth+  ++++e  +++ +++   +Pe +
  MMETSP1061-20121228|9097_1  69 LLVLGPVALMGDATGfLGETLCFAFSGMALIPCAERLSFVTEQVAMHTNGTIGALLNATFGNAPELLIASAALRKGFYRVVQLAMLGSMLTNLLFVFGISCLIGGLRWQVQELRITSGNVSVGMLLLSTAGSLLPATLvlgGQLRNGSANdgeaetsslmiaagqptVEELQFCRVNAFVMILMYGCYLVFQLGTHKEEFDEHEPCSSDSPHL-TPHPETP 288
                 688899999998887369*********************************************************************************************************************998556567778777788999999999988755677888999*************************99999998877.3445443 PP

  == domain 2    score: 131.2 bits;  conditional E-value: 8e-42
   TIGR00378 192 eiedePehs....lsvkvatvvllavtvvvavisellvgtlesvveslGlsklfiGvivvpivGnaaehatavlvalkdkmdlalevavGsslqialfvaPvlvivgilidvpmdlnfslfelvallvavllvnaissdGesnwleGvlllaayvivalaff 349
                 ++e +P  +    +s +v +  l+ +t++++ +s++lv+t++  + ++ +s++f+ +i+vp   n ae ++a+l a+++ mdl+++v+vGs++q+a +v P  vi+g+++d +m+l f ++e+v+++ av+++ a+ + G++nwl G++ +++yv++a +f+
  MMETSP1061-20121228|9097_1 499 QVETNPTSAlevqMSFRVGILWLFIITLGISAMSDILVNTIDGFAIRMHFSEVFTSMIIVPFFSNVAEQVSAILFAYRNEMDLCVGVTVGSAIQVASLVLPGCVIIGWMVDRSMTLYFHAYETVCIFFAVIVIAAVLQGGTTNWLVGATCISVYVMMATGFW 660
                 44667776644446667777789****************************************************************************************************************************************995 PP

>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   1.4   1.9e-06    0.0025      16     102 ..      99     181 ..      87     209 .. 0.78
   2 !   32.6   0.0   6.8e-12   9.3e-09     125     306 ..     241     649 ..     223     656 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.9e-06
   TIGR00367  16 ivsaellvksltviaeklgisdlviGvTvvaagtSlPElftsliavliaksdigigtvvGSnifNillvlglcallsreilvltkll 102
                 i +ae l    +++a +    +  iG+ + a  + +PEl+ + +a  ++   ++   ++GS + N+l+v g++ l+   +  + ++l
  MMETSP1061-20121228|9097_1  99 IPCAERLSFVTEQVAMH---TNGTIGALLNATFGNAPELLIASAALRKGFYRVVQLAMLGSMLTNLLFVFGISCLIG-GLRWQVQEL 181
                 55666555555555544...35689**************************************************98.555555554 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 6.8e-12
   TIGR00367 125 lesllllvllflyvvylkflvkverkqain..............................................................................................................................dtlteeqvdenerq................................................................................................................rkqitfllvllivgltllvvgsrllVdsavqiaetlgiseeiiGltilAaGTSlpeLvvsviaarkglgdlavgsvvGsNifdIlvglglpallatirvkpvavslda..lvlvivllllllivvilsialkrw.lglill 306
                 + +++++v++++y  yl f + +++++  +                                                                                                                                           q                                                                                                                + +  + +++l +   ++   s +lV++    a  +  se    ++i+ +   ++e v ++  a++++ dl vg  vGs i    ++l+   ++  +  + +++ + a  +v+++ +++++  v   +   + w +g   +
  MMETSP1061-20121228|9097_1 241 FCRVNAFVMILMYGCYLVFQLGTHKEEFDEhepcssdsphltphpetpqrnlfcvwlvrrakcilrgndtvehellaseeewmaaarrvipseqrngnvttgdgdvelmyrdakrtnhqllgmipserdsgeeeddedasssdeecllptnfhangR------------QmagnsddlsyfddylaandgngrtpflepgaprlrrgthpeatathptptehnrninndhtcapggqgnrkkkkngmpgvllplglaeptetvqtapsvpqvetnptsalevQMSFRVGILWLFIITLGISAMSDILVNTIDGFAIRMHFSEVFTSMIIVPFFSNVAEQVSAILFAYRNEMDLCVGVTVGSAIQVASLVLPGCVIIGWMVDRSMTLYFHAyeTVCIFFAVIVIAAVL--QGGTTNWlVGATCI 649
                 6678889999999999999998888555556788889999999999999999999999999999999888888888888888888888888888877777777777777777777777777777777666655555555444444444444444440............155555555555555555555555555555555555555555555555555555557777777778888888888888888888888888888888888888888888888666666677888888888999999***********************************************************99999999888887733333344443311455555544443333..34444443455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 3126.78
//
Query:       MMETSP1061-20121228|9100_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043   11.8   0.8       0.12   10.3   0.3    1.9  2  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family


Domain annotation for each model (and alignments):
>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.64   2.6e+03      11      20 ..      92     101 ..      91     106 .. 0.68
   2 ?   10.3   0.3   2.9e-05      0.12      10      38 ..     205     234 ..     204     240 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.64
   TIGR02605  11 Cghefevlqk 20 
                 Cg+  +++ +
  MMETSP1061-20121228|9100_1  92 CGNATNAMTS 101
                 8887777765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 2.9e-05
   TIGR02605  10 aCghefevlqkmsd.dplasCPeCgseele 38 
                  Cgh+fe+   ++  ++  +CP+ g ++++
  MMETSP1061-20121228|9100_1 205 VCGHSFEQAAILQHlQKSRKCPKAGCTNVR 234
                 6**********************9987775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1478.28
//
Query:       MMETSP1061-20121228|9099_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-28   96.0   0.8    6.1e-28   95.7   0.5    1.1  1  TIGR02287 PaaY: phenylacetic acid degradation protein PaaY
    2.4e-15   54.5  12.8    4.3e-10   37.3   5.4    2.4  2  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
    1.4e-10   39.0   9.8    3.5e-10   37.7   6.7    1.7  1  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
    1.3e-08   31.5   6.3    6.6e-08   29.2   3.0    2.4  2  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
    5.2e-07   26.7   7.5    9.1e-05   19.4   2.0    2.3  2  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
    5.3e-07   27.0   6.9    1.3e-06   25.7   4.8    1.6  1  TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
    2.1e-05   22.5  11.9      0.023   12.6   0.5    3.5  4  TIGR01172 cysE: serine O-acetyltransferase
    0.00023   17.9   4.6     0.0034   14.1   1.4    2.2  2  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    0.00051   17.3   6.2      0.036   11.2   1.5    2.1  2  TIGR03991 alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0007   16.4   5.4     0.0017   15.1   3.8    1.6  1  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
    0.00085   16.8   6.1     0.0066   13.9   1.2    2.4  2  TIGR04016 WcaB: colanic acid biosynthesis acetyltransferase WcaB
    0.00086   17.0  10.7     0.0033   15.1   2.4    3.2  3  TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
     0.0071   13.1   3.9       0.02   11.6   2.7    1.7  1  TIGR01208 rmlA_long: glucose-1-phosphate thymidylyltransferase
  ------ inclusion threshold ------
      0.056   10.3   2.1      0.074    9.9   1.0    1.4  2  TIGR02091 glgC: glucose-1-phosphate adenylyltransferase


Domain annotation for each model (and alignments):
>> TIGR02287  PaaY: phenylacetic acid degradation protein PaaY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.7   0.5   2.1e-30   6.1e-28       3     181 ..      47     230 ..      45     239 .. 0.91

  Alignments for each domain:
  == domain 1    score: 95.7 bits;  conditional E-value: 2.1e-30
   TIGR02287   3 eidgltpvvh.eeayvhpsavligdvivgkrvyvgplaslrgdfgrivlkeganvqdtcvmhgfp...gqdtvveenghvghgailhgcrvgrnalvgmnavvmdgavigessivaasafvkagleiaaqvlvvgspakvvrelseqelawkkegtreyqdlaa.rslqtlkeveplaeaeagr 181
                  +dg+ p ++  + ++ psa +ig+v +g++  v   a++rgd  ++ +   + + d  v+h      ++ t++++n  +g gai+h+c++    +vg  a ++dga +g +s+va +++v ag +i++  l  g+pak  r l+ +e+a   e ++   +la   +++  k+ + l e e +r
  MMETSP1061-20121228|9099_1  47 SVDGVAPALPgANNFIAPSASVIGNVTIGEHSSVWYGATVRGDVNNVKIGSKTSIGDRAVVHVAKiqgDHPTMIGDNVTIGAGAIVHACTIEDLVVVGESAQILDGATVGTNSVVAPASLVTAGTKIPSGELWSGAPAKKERALTSEEIAEISESAHDTLELAYlHAVENSKDYKQLIEEEEDR 230
                 79*****9983578************************************************864211556********************************************************************************999999999998536778888888898888887 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   1.4   2.4e-08     7e-06     140     187 ..      58     108 ..      56     114 .. 0.89
   2 !   37.3   5.4   1.5e-12   4.3e-10     113     202 .]      94     185 ..      92     185 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 2.4e-08
   TIGR03570 140 dfvhiapgatlsGgvkigegvfiGagAtvi...qgvtIgkgavvGaGavVv 187
                 +++ iap+a + G+v+ige++ +  gAtv+   ++v+Ig+++ +G  avV 
  MMETSP1061-20121228|9099_1  58 ANNFIAPSASVIGNVTIGEHSSVWYGATVRgdvNNVKIGSKTSIGDRAVVH 108
                 5689*************************83336789************95 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 1.5e-12
   TIGR03570 113 vinadvrigdnviintgavv.eHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaGavVvk..dipenavvvGvPak 202
                  i ++++igd  +++   +  +H + igd+v+i +ga++   ++i++ v++G  A++++g t+g ++vv   ++V++   ip+++++ G Pak
  MMETSP1061-20121228|9099_1  94 KIGSKTSIGDRAVVHVAKIQgDHPTMIGDNVTIGAGAIVH-ACTIEDLVVVGESAQILDGATVGTNSVVAPASLVTAgtKIPSGELWSGAPAK 185
                 5888999999999988766438***************998.69*********************************744799**********8 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.7   6.7   1.2e-12   3.5e-10      86     213 ..      59     189 ..      52     205 .. 0.83

  Alignments for each domain:
  == domain 1    score: 37.7 bits;  conditional E-value: 1.2e-12
   TIGR03532  86 nariepGaiirdkvaigdnavimmGavi.......niGa..eiGegtmidmnavlGgr.aivGknvhiGaGavlaGvieppsakpvvieddvliGanavileGvkvGkGavvaaGaivi..edvpentvvaGvpakvike 213
                 n  i p a +  +v+ig+ + +  Ga++        iG+   iG+ +++ +  + G   +++G nv iGaGa++         + ++ied v++G  a il+G +vG  +vva  ++v+  + +p+  + +G+pak  + 
  MMETSP1061-20121228|9099_1  59 NNFIAPSASVIGNVTIGEHSSVWYGATVrgdvnnvKIGSktSIGDRAVVHVAKIQGDHpTMIGDNVTIGAGAIV---------HACTIEDLVVVGESAQILDGATVGTNSVVAPASLVTagTKIPSGELWSGAPAKKERA 189
                 67799********************9863333322578622599999999999999873579**********98.........4699*******************************94447999*********97655 PP

>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       0.4   1.2e+02     649     666 ..      70      86 ..      61      91 .. 0.75
   2 !   29.2   3.0   2.2e-10   6.6e-08     133     213 ..      94     187 ..      90     207 .. 0.67

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.4
   TIGR02353 649 gdgatlgpsaivlygavv 666
                 g  +t+g+++ v yga+v
  MMETSP1061-20121228|9099_1  70 G-NVTIGEHSSVWYGATV 86 
                 3.5889999999999987 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 2.2e-10
   TIGR02353 133 tiGagvivekevdllgyrvergr.......lriG......svrvgddafvGtrsvldidtaiGdraqleasSalasgqsipegerWaGsPAqkv 213
                 +iG  +++ + + ++ ++++++        + iG        +++d ++vG+ + +  ++++G+ + +++ S ++ g +ip+ge W+G+PA+k 
  MMETSP1061-20121228|9099_1  94 KIGSKTSIGDRAVVHVAKIQGDHptmigdnVTIGagaivhACTIEDLVVVGESAQILDGATVGTNSVVAPASLVTAGTKIPSGELWSGAPAKKE 187
                 6666666666666666666654321111113443222111246777788888888888888888888888888888888888888888888875 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   2.0   3.1e-07   9.1e-05     102     173 ..      57     132 ..      21     136 .. 0.66
   2 !    9.6   0.3    0.0003     0.088     111     149 ..     135     173 ..     131     182 .. 0.52

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 3.1e-07
   TIGR01853 102 eesakleeeveigpnvviganvei..GenvkI.gpgvvigddvkigdesviy.anvviyeevklgknviiqagavi 173
                  +++ +++++++  nv+ig+++++  G+ v+  + +v ig++++igd +v++ a++   + +++g+nv+i aga++
  MMETSP1061-20121228|9099_1  57 GANNFIAPSASVIGNVTIGEHSSVwyGATVRGdVNNVKIGSKTSIGDRAVVHvAKIQGDHPTMIGDNVTIGAGAIV 132
                 45555777777777777777777633444443234566777777777777763556666889***********998 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0003
   TIGR01853 111 veigpnvviganveiGenvkIgpgvvigddvkigdesvi 149
                 ++i++ vv+g+ ++i ++  +g+++v++  + + +++ i
  MMETSP1061-20121228|9099_1 135 CTIEDLVVVGESAQILDGATVGTNSVVAPASLVTAGTKI 173
                 445555555555555555555555555554444444444 PP

>> TIGR01852  lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   4.8   4.5e-09   1.3e-06      35     158 ..      60     173 ..      54     184 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 4.5e-09
   TIGR01852  35 velkshvviegattiGentkvfpgAviGeepQdlkykgekteleiGdnntirEfvtinrgtkegkgvtsiGdnnlllaysHvaHdcvvgnnvvlannatlaGhvevgdlaiigglvavHQfvri 158
                   +++ + + g++tiGe++ v+ gA++         +g+  +++iG+++ i + + ++ +  +g++ t+iGdn+ + a + + H c++++ vv+++ a++    +vg   +++  + v   ++i
  MMETSP1061-20121228|9099_1  60 NFIAPSASVIGNVTIGEHSSVWYGATV---------RGDVNNVKIGSKTSIGDRAVVHVAKIQGDHPTMIGDNVTIGAGA-IVHACTIEDLVVVGESAQILDGATVGTNSVVAPASLVTAGTKI 173
                 5678889999**************998.........45667899999999999*******************99988876.88****************9999999999998888777655555 PP

>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.2    0.0007      0.21     119     152 ..      59      92 ..      53      96 .. 0.88
   2 ?    2.0   0.1      0.14        41     126     146 ..      84     107 ..      82     113 .. 0.74
   3 !    7.1   2.4    0.0039       1.1     116     158 ..     101     144 ..      91     144 .. 0.76
   4 !   12.6   0.5   7.8e-05     0.023     115     162 .]     136     185 ..     133     185 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0007
   TIGR01172 119 gvvigagakvLGnievgenakiGansvvlkdvpa 152
                 +  i+ +a+v+Gn+++ge++++  ++ v  dv +
  MMETSP1061-20121228|9099_1  59 NNFIAPSASVIGNVTIGEHSSVWYGATVRGDVNN 92 
                 5679999*******************99999875 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.14
   TIGR01172 126 akvLG...nievgenakiGansvv 146
                 a+v G   n+++g++++iG  +vv
  MMETSP1061-20121228|9099_1  84 ATVRGdvnNVKIGSKTSIGDRAVV 107
                 55555222679**********999 PP

  == domain 3    score: 7.1 bits;  conditional E-value: 0.0039
   TIGR01172 116 vkegvvigagakvLGn..ievgenakiGansvvlkdvpaeatvvG 158
                 +++++v+   ak+ G+    +g+n+ iGa+++v     ++++vvG
  MMETSP1061-20121228|9099_1 101 IGDRAVVH-VAKIQGDhpTMIGDNVTIGAGAIVHACTIEDLVVVG 144
                 55555553.588888633689999999999999998888888887 PP

  == domain 4    score: 12.6 bits;  conditional E-value: 7.8e-05
   TIGR01172 115 tvkegvvigagakvLGnievgenakiGansvvlk..dvpaeatvvGvpar 162
                 t+++ vv+g +a++L   +vg n+ +  +s+v+   ++p++    G pa+
  MMETSP1061-20121228|9099_1 136 TIEDLVVVGESAQILDGATVGTNSVVAPASLVTAgtKIPSGELWSGAPAK 185
                 8999****************************953378888888888876 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.012       3.4     395     433 ..      57      95 ..      47     103 .. 0.83
   2 !   14.1   1.4   1.2e-05    0.0034     261     341 ..      97     173 ..      91     178 .. 0.61

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.012
   TIGR01173 395 gddvfiGsdsqlvaPvkvgdgatiaaGstvtkdvpegaL 433
                 g + fi   ++++  v++g++  +  G+tv+ dv++ ++
  MMETSP1061-20121228|9099_1  57 GANNFIAPSASVIGNVTIGEHSSVWYGATVRGDVNNVKI 95 
                 677888888999999999999999999999999987665 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 1.2e-05
   TIGR01173 261 kdveigqdvviepnvilegk..vkigedvviGagsvikdsaikenakikaysvlekseigegasvGPfarlRpesvlkeeaki 341
                 ++ +ig   v+++   ++g+  + ig++v+iGag++++ ++i++ +++      e+++i +ga+vG  + + p s +++++ki
  MMETSP1061-20121228|9099_1  97 SKTSIGDRAVVHVA-KIQGDhpTMIGDNVTIGAGAIVHACTIEDLVVVG-----ESAQILDGATVGTNSVVAPASLVTAGTKI 173
                 44455554444443.3333323789999999999999999999999998.....55555555555555555555555555554 PP

>> TIGR03991  alt_bact_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.2   0.00095      0.28     206     247 ..      58     102 ..      52     108 .. 0.84
   2 !   11.2   1.5   0.00012     0.036     173     236 ..     110     175 ..      97     181 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00095
   TIGR03991 206 kdakveefsflegpvyigegarvkagarikg...gtsiGttckiG 247
                 ++  + + + + g+v ige++ v  ga ++g   ++ iG ++ iG
  MMETSP1061-20121228|9099_1  58 ANNFIAPSASVIGNVTIGEHSSVWYGATVRGdvnNVKIGSKTSIG 102
                 56679999*********************9822245788888887 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00012
   TIGR03991 173 vvvvkekavfieegakvkegavldas..dGpivigkdakveefsflegpvyigegarvkagarikg 236
                 + ++ ++  +i+ ++++ +ga+++a   +  +v+g+ a++ +++ +  + ++++ + v+ag +i +
  MMETSP1061-20121228|9099_1 110 AKIQGDHPTMIGDNVTIGAGAIVHACtiEDLVVVGESAQILDGATVGTNSVVAPASLVTAGTKIPS 175
                 4467788899999999999999997533789***************************99999966 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   3.8   5.7e-06    0.0017     236     334 ..      59     162 ..      51     176 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 5.7e-06
   TIGR03992 236 egeveenvklkgevvveegavvrsgayieGp...vligknaeiGPnayiRpatviged.vkvgnaveiKnsiimeetkipHlsYvGDSv.igedvNlgagtkva 334
                 ++ + + +++ g+v+++e + v  ga + G    v ig++++iG  a +  a + g++ + +g  v i +  i++   i  l  vG+S  i  ++ +g++++va
  MMETSP1061-20121228|9099_1  59 NNFIAPSASVIGNVTIGEHSSVWYGATVRGDvnnVKIGSKTSIGDRAVVHVAKIQGDHpTMIGDNVTIGAGAIVHACTIEDLVVVGESAqILDGATVGTNSVVA 162
                 5668899***********************722257**************999998864789************************996477778888888776 PP

>> TIGR04016  WcaB: colanic acid biosynthesis acetyltransferase WcaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.3     0.017       4.8     101     133 ..      62      94 ..      46     111 .. 0.63
   2 !   13.9   1.2   2.3e-05    0.0066     111     142 ..     118     149 ..      93     151 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.017
   TIGR04016 101 lganvillgditignnvtigagsvvldsipdna 133
                 +     ++g++tig++ ++  g+ v   + +  
  MMETSP1061-20121228|9099_1  62 IAPSASVIGNVTIGEHSSVWYGATVRGDVNNVK 94 
                 444556789999999999999998877765533 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 2.3e-05
   TIGR04016 111 itignnvtigagsvvldsipdnalvvgekarv 142
                   ig+nvtigag++v  +  ++ +vvge a++
  MMETSP1061-20121228|9099_1 118 TMIGDNVTIGAGAIVHACTIEDLVVVGESAQI 149
                 469***************999*******9976 PP

>> TIGR03308  phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.8      0.13        38     122     150 ..      67      95 ..      51     111 .. 0.55
   2 ?    3.6   1.0     0.038        11     119     137 ..     116     134 ..      91     140 .. 0.61
   3 !   15.1   2.4   1.1e-05    0.0033     106     172 ..     132     200 ..     107     227 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.13
   TIGR03308 122 vilPgvtiGnGavvaagavvtkdvasyti 150
                  ++ +vtiG+ + v  ga v  dv    i
  MMETSP1061-20121228|9099_1  67 SVIGNVTIGEHSSVWYGATVRGDVNNVKI 95 
                 55555555555555555555555544333 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.038
   TIGR03308 119 hGavilPgvtiGnGavvaa 137
                 h ++i  +vtiG Ga+v a
  MMETSP1061-20121228|9099_1 116 HPTMIGDNVTIGAGAIVHA 134
                 4444445555555555555 PP

  == domain 3    score: 15.1 bits;  conditional E-value: 1.1e-05
   TIGR03308 106 akrvtiGhdvWiGhGavilPgvtiGnGavvaagavvtk..dvasytivaGvpaklirrrfaeeiaerle 172
                  ++ ti   v +G  a il g t+G+ +vva  ++vt    ++s  + +G+pak  r   +eeiae  e
  MMETSP1061-20121228|9099_1 132 VHACTIEDLVVVGESAQILDGATVGTNSVVAPASLVTAgtKIPSGELWSGAPAKKERALTSEEIAEISE 200
                 57788888899*************************9633799*************9999999998544 PP

>> TIGR01208  rmlA_long: glucose-1-phosphate thymidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   2.7   6.8e-05      0.02     241     317 ..      85     159 ..      62     194 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.8e-05
   TIGR01208 241 evkGvkekskieGrvkveegakivnsvirG..PaviGedviiensyigpytsigegvvikdaeveksivldesviegve 317
                  v+G+ ++ ki  +  +++ a +  ++i+G  P++iG++v+i    i +  +i++ vv+ ++    + +ld++++ ++ 
  MMETSP1061-20121228|9099_1  85 TVRGDVNNVKIGSKTSIGDRAVVHVAKIQGdhPTMIGDNVTIGAGAIVHACTIEDLVVVGES----AQILDGATVGTNS 159
                 57888888888888888888888888888877888888887766555555555555544322....2222222222222 PP

>> TIGR02091  glgC: glucose-1-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.0   0.00025     0.074     280     362 ..      60     149 ..      28     151 .. 0.82
   2 ?    7.8   0.3    0.0011      0.32     297     345 ..     123     173 ..     104     176 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00025
   TIGR02091 280 eqlppakfveskeakvkdslvaegcvisgatvenSvlgervriesesevedsvvlge........vkigenakikkaiidknvrigegvki 362
                 ++++p+  v  + +  ++s v  g++++g  v+n  +g+++ i++ + v+ + + g+        v+ig++a ++ + i+  v++ge ++i
  MMETSP1061-20121228|9099_1  60 NFIAPSASVIGNVTIGEHSSVWYGATVRG-DVNNVKIGSKTSIGDRAVVHVAKIQGDhptmigdnVTIGAGAIVHACTIEDLVVVGESAQI 149
                 45555555555323356788899999999.9999999999999999999988888888888888899999999999999999999999887 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0011
   TIGR02091 297 dslvaegcvisgatvenS.vlgervriesesev.edsvvlgevkigenaki 345
                 +  +++g++++++t+e+  v+ge+++i ++++v ++svv ++  + +++ki
  MMETSP1061-20121228|9099_1 123 NVTIGAGAIVHACTIEDLvVVGESAQILDGATVgTNSVVAPASLVTAGTKI 173
                 456899999999999986156888999999998568999999888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1094.73
//
Query:       MMETSP1061-20121228|9104_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|9101_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0097   13.5   0.5      0.014   12.9   0.4    1.2  1  TIGR02796 tolQ: protein TolQ
  ------ inclusion threshold ------
       0.15   11.1   3.4       0.15   11.1   0.8    2.0  2  TIGR03661 T1SS_VCA0849: type 1 secretion C-terminal target domain (VC_A0849 subclass)


Domain annotation for each model (and alignments):
>> TIGR02796  tolQ: protein TolQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.4   7.1e-06     0.014      47     116 ..      34     105 ..      29     114 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.1e-06
   TIGR02796  47 efeekfwsgkeleelyeslskkkeeesglesifeaglkefsr..lkkkkelksesvlerieralkvalarel 116
                 +fe++f +g +l+el +s++ +++++s++e++++   +e ++  l++++e+k +++le+  + l+++ ++  
  MMETSP1061-20121228|9101_1  34 AFESSFAKGLDLTELLSSFDGQSNRTSAAEELLKIKEAERRQrqLEEQEEVKLQQALEKRLHSLQNNANKGK 105
                 7*******************************9876666543014444455566666666666666665554 PP

>> TIGR03661  T1SS_VCA0849: type 1 secretion C-terminal target domain (VC_A0849 subclass)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.8   7.4e-05      0.15      13      74 ..      42     104 ..      34     122 .. 0.74
   2 ?    0.3   0.1      0.18   3.6e+02      31      59 ..     116     144 ..     102     159 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 7.4e-05
   TIGR03661  13 klDLsdLLsgeg...assssldqyLnvttssedgstvisvdsdgsagsaakvtqtitLegvdlss 74 
                  lDL++LLs+++   + +s ++++L++ +++   + +++ +++++  ++a  +  ++L++ + + 
  MMETSP1061-20121228|9101_1  42 GLDLTELLSSFDgqsNRTSAAEELLKIKEAER-RQRQLEEQEEVK-LQQALEKRLHSLQNNANKG 104
                 59*******999988788899*******9885.788898888885.3334466667777766544 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.18
   TIGR03661  31 dqyLnvttssedgstvisvdsdgsagsaa 59 
                 d +L+++ s++++ +++s +s+ s ++++
  MMETSP1061-20121228|9101_1 116 DALLRMHGSDDKTASILSRKSTKSRKNNT 144
                 56788887776655555555554433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 873.16
//
Query:       MMETSP1061-20121228|9109_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 666.89
//
Query:       MMETSP1061-20121228|9103_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   15.6   1.0      0.064   10.7   0.1    2.1  2  TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03062  pip_yhgE_Cterm: YhgE/Pip C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   1.6e-05     0.064       6      28 ..      27      49 ..      22      52 .. 0.93
   2 !    4.1   0.0    0.0017       6.8      11      34 ..      54      77 ..      50      85 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.6e-05
   TIGR03062  6 ePvklkekdkskvpnyGtGlAPy 28
                ePv+ k+++   v  ++t++AP+
  MMETSP1061-20121228|9103_1 27 EPVEFKQDKAAAVAAFATAMAPF 49
                8*********************9 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0017
   TIGR03062 11 kekdkskvpnyGtGlAPyflslaL 34
                +  d+ +v  yG+Gl + ++sla+
  MMETSP1061-20121228|9103_1 54 EAVDEATVIGYGAGLVACVVSLAV 77
                6678899999***********995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 587.35
//
Query:       MMETSP1061-20121228|9110_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1766.14
//
Query:       MMETSP1061-20121228|9113_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|9111_1  [L=854]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       534  (0.13018); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.14s 00:00:00.71 Elapsed: 00:00:00.49
# Mc/sec: 2300.38
//
Query:       MMETSP1061-20121228|9106_1  [L=1010]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1192.3  16.4          0 1192.0  11.4    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
   7.6e-240  796.4   8.3   1.1e-239  795.9   5.7    1.1  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
   2.2e-231  767.8   3.7   1.3e-120  401.6   0.8    2.1  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    3.4e-10   36.9   0.3    1.3e-05   21.9   0.0    2.3  2  TIGR00764 lon_rel: putative ATP-dependent protease
    4.8e-09   33.1   0.1    4.3e-06   23.4   0.0    2.5  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    2.5e-05   21.3   1.1      0.072    9.9   0.4    3.6  3  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    3.5e-05   20.6   0.0      0.016   11.9   0.0    3.4  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00019   18.3   0.0    0.00019   18.3   0.0    4.3  5  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    0.00021   18.7   0.0       0.51    7.6   0.0    3.7  4  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
    0.00023   19.0   1.3      0.014   13.2   0.1    3.0  2  TIGR00012 L29: ribosomal protein L29
     0.0004   17.8   0.0      0.069   10.5   0.0    2.4  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    0.00065   16.9   0.0      0.097    9.7   0.0    2.8  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0016   14.9   0.1       0.35    7.2   0.0    2.9  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
  ------ inclusion threshold ------
       0.53    8.0  15.2       0.31    8.8   0.0    4.6  5  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1192.0  11.4         0         0      38     851 ..     136     967 ..      89     969 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1192.0 bits;  conditional E-value: 0
   TIGR03346  38 eglvaallekagvnvealkealekeleklpkvsgag..gevslskelerllekaeklaqklgdefvsvellllalleekeea.kkllkeagvtkekleeaieevrgge.kvtdanaeekyealekyardlteraregkldPviGrdeeirrviqvlsrrtknnPvliGepGvGktaiveGlaqrivngdvPeslknkrllaldlgaliaGakyrGefeerlkavlkevekseGeiilfidelhtlvGaGkaeGaldagnllkPalarGelhciGattldeyrkyiekdaalerrfqkvlvdePsvedtisilrGlkeryevhhgvritdsalvaaatlshryitdrflPdkaidlideaaarlrmeidskPeeldeldrriiqlkierealk.........kekdeaskerleklekelaeleeesaeleekwkaekekiekvkkikeelekvklelekakregdlakaaelkygklpelekeleeaeekekeekke...kllkeevteeeiaevvsrwtGiPvskllegerekllkleeelkervvGqdeaveavadavrrsraglsdPnrPigsflflGptGvGktelakalaeflfddeealvridmseymekhsvarliGaPPGyvGyeeGGqlteavrrkpysvvlldevekahpdvfnvllqvlddGrltdgqGrtvdfkntviiltsnlgseaiqelaeeee..aeevkeavmealraefrPeflnrideivvfkalekeeikeiveiqlerlrkrlaerklelelsdaaldllaeagydPvyGarPlkraiqkelenplakkllagevkegdtiavdveddklv 851
                    v+++++ +  +v+ l+++le +l+++pk++g +  ++ ++  +l r+le+a +++++lgd+fvs+e lll l++e+++  +k l +++++  ++++ai ++r++   + +++ae++y+al ky++d+tera++gkldPviGrd+eirr+iq+lsrrtknnPvliG+pGvGktai+eG+aqr+v gdvP++l++ +l+ ldl+al+aGa  rGefeerlk+vl+ev++s+Geiilfide+ht+vGaG+a G++da+nllkPalarG+l+ciGatt++eyr+yiekd+alerrfq+v +d+Ps edt+silrGlk rye+hhgvri+d+al+aaa+lshryi drflPdkaidl+dea+a+l+ e++skP+ lde+drriiq+++er +l+         +e ++++ +rl+ ++kel+el++e+++l+ kw aek  ++++k+ik+++ +v le+ek +re dl+kaaelky klp l++ele+ e+  +e+  +   ++l++ev +++ia+vv+ wtGiP +klle+er ++l + ++l+erv+Gq+eave+v++av+rsragl+dP +Pi+s++flGptGvGktel+kal+ef+fd+e+a++ridmseymekh+varl+GaPPGyvGy+eGGqlt+avrrkpysv+l+de+ekahpdvfnv+lq+lddGrltd++G  v+f+nt+i++tsn+gs+ i++l++++e  +e ++e+vm a+r++f+Peflnride v+f++l+k  ++eiv+++++rl+krlae+++++++sdaal++l+e g+dP+yGarPlkr+iqkele+ +a+ +lage+ +gd iavd+ +d+l+
  MMETSP1061-20121228|9106_1 136 RKAVEKVFKDVKCDVKVLRQELEMHLAQQPKMQGDTasQQKTMGYSLPRVLEAARSAKSTLGDSFVSAEALLLGLVKEDDRFtTKALLKQNIKYTDVSDAIVKMREKSgPIISRSAENNYDALLKYGIDFTERAEQGKLDPVIGRDDEIRRAIQILSRRTKNNPVLIGDPGVGKTAIAEGIAQRMVAGDVPDTLQGCKLIGLDLAALVAGASMRGEFEERLKSVLEEVQNSDGEIILFIDEMHTVVGAGAAAGSMDASNLLKPALARGQLRCIGATTINEYRQYIEKDKALERRFQQVTIDQPSPEDTVSILRGLKPRYETHHGVRIRDEALLAAAKLSHRYIPDRFLPDKAIDLVDEACAKLKNELTSKPTVLDEIDRRIIQMEMERLSLQsdyesgeegQEANKDAGKRLSVIDKELEELKNEQQALNLKWMAEKGGVDRIKDIKTDIAQVMLEIEKCEREFDLNKAAELKYAKLPPLQEELEKLEQVGEESGLDdgeRMLRDEVVADDIADVVAVWTGIPPTKLLESERTRILTMGDRLSERVIGQQEAVEVVTEAVQRSRAGLNDPTKPIASLIFLGPTGVGKTELCKALSEFMFDTEDAIIRIDMSEYMEKHTVARLLGAPPGYVGYDEGGQLTDAVRRKPYSVLLFDEMEKAHPDVFNVMLQLLDDGRLTDSKGTSVNFRNTLIVFTSNVGSQDILDLQGDDEaqKEMMRERVMAAMRDKFKPEFLNRIDEHVIFNRLDKPALREIVKLEIRRLEKRLAEKEISISVSDAALNFLTEIGFDPIYGARPLKRTIQKELETVVARGVLAGEYGDGDGIAVDAVGDRLE 967
                 45688999*************************98866888999********************************998876589999999*************97652799**************************************************************************************************************************************************************************************************************************************************************************************98333333333455667779****************************************************************************99988776554466***********************************************************************************************************************************************************************************************************999887668899****************************************************************************************************************99987 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  795.9   5.7  3.7e-242  1.1e-239      35     837 ..     133     948 ..     123     955 .. 0.90

  Alignments for each domain:
  == domain 1    score: 795.9 bits;  conditional E-value: 3.7e-242
   TIGR03345  35 eeedsdlaeilkelkvdleelkaelaraleklkkgnsr....vpalskelvelleeawllaslelgeervrsgalllalleeaelrallssvskelekieveelkeklealveesaeaeeaekeasaaaeakaaakesaLdkytvdltaqAregkiDpvlgRdeeirqliDiLlRRrqnnPiltGeaGvGktAvveglAlriaagdvPealrevellsLDlgllqAGAsvkGeFekRlksvidevkasekpiilFiDeaHtliGaGgqaGqgDaanllkPaLARGelrtiaAttWaeykkyiekDaALtRRFqvvkveePdeekaiemlRglakvlekhhgveildeavkaavelsaRYisgRqLPDkavsllDtAcarvalsqkatPaeledlekeiealeaelellereeelgaeeee.......rlaeleeelaaleeelaalearwekekelveeikelreklee..............eeeeeaeeeealeaelaeleaelael......qgeeplvsaevdeevvaevvadWtGiPvgrlvkdeiekvleleekleervvGqdealeaiaerirtarAgledpkkPlgvFllvGpsGvGktetalalAellyGgeqnlitinmsefqeaHtvstLkGsPPGYvGyGeGGvLteAvRrkPysvvLLDevekAhpdvlelFyqvFDkGvleDgeGreidfkntvilltsnvgsdliaelaadeetapeaealaealrpeLlkvfkpAllgRl.evvpylplsdevlaeivelkleriakrlkenykaeleydealveeivarctevesGaRaidaileqtllpelseelLe 837
                 e++++ +++++k++k+d++ l++el+ +l++ +k +++     +++  +l ++le+a   a+ +lg++ v++ alll l++e++ r +++++ k  ++i+ +++++++ ++          ++++  + + +a+++ +aL ky +d+t++A++gk+Dpv+gRd+eir+ i iL RR +nnP+l+G++GvGktA+ eg+A+r++agdvP++l++ +l+ LDl++l AGAs++GeFe+Rlksv++ev++s+  iilFiDe+Ht++GaG++aG+ Da+nllkPaLARG+lr i+Att  ey++yiekD AL RRFq v ++ P+ e ++++lRgl++++e+hhgv+i+dea+ aa++ls+RYi++R LPDka++l+D Aca+++ + +++P+ l++++++i ++e+e+  l+++ e+g+e +e       rl+ +++el++l++e++al+ +w +ek  v++ik++++++++              ++++e +   a+   l+e  ++l+++      +  e++++ ev ++ +a+vva WtGiP  +l+++e +++l++ ++l+erv+Gq+ea+e ++e+++ +rAgl+dp+kP++  +++Gp GvGkte   al e ++ +e ++i i+mse+ e+Htv++L+G+PPGYvGy eGG Lt+AvRrkPysv+L De+ekAhpdv ++  q+ D G l+D++G++++f+nt+i++tsnvgs+ i +l  d+e   ++e + e ++++++++fkp +l R+ e v +  l++ +l+eiv+l++ r++krl+e+ ++++++++a+++ +++   +   GaR +++ ++++l   +++ +L 
  MMETSP1061-20121228|9106_1 133 ESARKAVEKVFKDVKCDVKVLRQELEMHLAQQPKMQGDtasqQKTMGYSLPRVLEAA-RSAKSTLGDSFVSAEALLLGLVKEDD-RFTTKALLK--QNIKYTDVSDAIVKM----------REKSGPIISRSAENNYDALLKYGIDFTERAEQGKLDPVIGRDDEIRRAIQILSRRTKNNPVLIGDPGVGKTAIAEGIAQRMVAGDVPDTLQGCKLIGLDLAALVAGASMRGEFEERLKSVLEEVQNSDGEIILFIDEMHTVVGAGAAAGSMDASNLLKPALARGQLRCIGATTINEYRQYIEKDKALERRFQQVTIDQPSPEDTVSILRGLKPRYETHHGVRIRDEALLAAAKLSHRYIPDRFLPDKAIDLVDEACAKLKNELTSKPTVLDEIDRRIIQMEMERLSLQSDYESGEEGQEankdagkRLSVIDKELEELKNEQQALNLKWMAEKGGVDRIKDIKTDIAQvmleiekcerefdlNKAAELKY--AKLPPLQEELEKLEQVgeesglDDGERMLRDEVVADDIADVVAVWTGIPPTKLLESERTRILTMGDRLSERVIGQQEAVEVVTEAVQRSRAGLNDPTKPIASLIFLGPTGVGKTELCKALSEFMFDTEDAIIRIDMSEYMEKHTVARLLGAPPGYVGYDEGGQLTDAVRRKPYSVLLFDEMEKAHPDVFNVMLQLLDDGRLTDSKGTSVNFRNTLIVFTSNVGSQDILDLQGDDEA--QKEMMRERVMAAMRDKFKPEFLNRIdEHVIFNRLDKPALREIVKLEIRRLEKRLAEK-EISISVSDAALNFLTEIGFDPIYGARPLKRTIQKELETVVARGVLA 948
                 567788999****************99999988766541111556777788888766.5678899*****************98.333333322..344444444444333..........33444455566788899******************************************************************************************************************************************************************************************************************************************************************************998877654332111113489999***********************************999****99987664422222222..3334444444444444111111556899**********************************************************************************************************************************************************************************************************998887..8899********************955799*************************99.9*************************************99999885 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  401.6   0.8  4.6e-123  1.3e-120      38     432 ..     138     519 ..     132     557 .. 0.91
   2 !  366.8   0.0  1.6e-112  4.6e-110     417     733 ..     639     960 ..     612     961 .. 0.93

  Alignments for each domain:
  == domain 1    score: 401.6 bits;  conditional E-value: 4.6e-123
   TIGR02639  38 ealeileecgadvellkkklekyleeelekleeeeeaepeqtvglqrvlerallhvksaekkevdigdllvalleeeesyasyllkkqgisrldilelisheiskdekkeeeeeeekeeeekeekkekealekytvdltekakkgkidPliGredelertiqvLcrrkknnPllvGepGvGktaiveGLakriaedkvPealknakiysLdlgsllaGtkyrGdfeerlkevveeiekeeda.ilfiDeihtivgagatsggsldasnlLkPalasGkirciGsttyeeykkifekdkaLsrrfqkidveePskeetvkilkglkekyeefhkvkysdealeaavelsakyindrfLPDkaiDviDeaGaalrlkekakkkakvsvkdieevvaki 432
                    +++++++ dv++l+++le +l ++ +   ++ +++ +   +l rvle a     + + + v+++ ll  l++e++ +++ +l kq+i+ +d+++ i +  +k+       ++ +       +++ +al ky  d+te+a++gk+dP+iGr+de+ r iq+L+rr+knnP+l+G+pGvGktai+eG+a+r+++++vP++l++ k+  Ldl++l+aG+  rG+feerlk+v+ee+++++ + ilfiDe+ht+vgaga++g+ +dasnlLkPala G++rciG+tt +ey++++ekdkaL rrfq++ ++ Ps e+tv+il+glk +ye +h v+  deal aa++ls++yi drfLPDkaiD++Dea a  +lk++ ++k +  + +i++ + ++
  MMETSP1061-20121228|9106_1 138 AVEKVFKDVKCDVKVLRQELEMHLAQQPKMQGDTASQQKTMGYSLPRVLEAARSAKSTLGDSFVSAEALLLGLVKEDDRFTTKALLKQNIKYTDVSDAIVKMREKSGPII---SR-S------AENNYDALLKYGIDFTERAEQGKLDPVIGRDDEIRRAIQILSRRTKNNPVLIGDPGVGKTAIAEGIAQRMVAGDVPDTLQGCKLIGLDLAALVAGASMRGEFEERLKSVLEEVQNSDGEiILFIDEMHTVVGAGAAAGS-MDASNLLKPALARGQLRCIGATTINEYRQYIEKDKALERRFQQVTIDQPSPEDTVSILRGLKPRYETHHGVRIRDEALLAAAKLSHRYIPDRFLPDKAIDLVDEACA--KLKNELTSKPT-VLDEIDRRIIQM 519
                 45589***********************999999999999999***********999**********************************9998888776555443222...22.2......2346789***********************************************************************************************************99977589*************9876.********************************************************************************************************999..66666655555.456777655554 PP

  == domain 2    score: 366.8 bits;  conditional E-value: 1.6e-112
   TIGR02639 417 kakvsvkdieevvakiakipeksvssddkekLknlekeLkkkifGqdeaiealvkaikrsraGlkeenkPvgsflfvGptGvGktelakqLaeel...gvellrfDmseymekhtvsrliGsPpGyvGfeeGGlLteavrknPyavlLlDeiekahpDilnilLqvmDyatLtDnsGrkadfrnvilimtsnaGakeaskakiGfaeekse...eksekaikklfsPefrnrldaiikfedlseevlekivkkeleelekkLaekkveleleddaikylaekgydeefGarelkrvieeeikkkladeiLfGklkkGgevkve 733
                 + +v   di++vva  + ip +++  ++++++ ++ ++L++++ Gq+ea+e +++a++rsraGl+++ kP++s++f GptGvGktel+k+L+e +     +++r+Dmseymekhtv+rl+G+PpGyvG++eGG+Lt+avr++Py+vlL+De+ekahpD++n++Lq++D ++LtD++G  ++frn++++ tsn+G++++     G  e ++e   e+++ a+++ f+Pef nr+d+ + f+ l++  l  ivk e+++lek+Laek+++++++d a+++l e g+d+ +Gar+lkr+i++e+++ +a+ +L G+  +G  + v+
  MMETSP1061-20121228|9106_1 639 RDEVVADDIADVVAVWTGIPPTKLLESERTRILTMGDRLSERVIGQQEAVEVVTEAVQRSRAGLNDPTKPIASLIFLGPTGVGKTELCKALSEFMfdtEDAIIRIDMSEYMEKHTVARLLGAPPGYVGYDEGGQLTDAVRRKPYSVLLFDEMEKAHPDVFNVMLQLLDDGRLTDSKGTSVNFRNTLIVFTSNVGSQDILD-LQGDDEAQKEmmrERVMAAMRDKFKPEFLNRIDEHVIFNRLDKPALREIVKLEIRRLEKRLAEKEISISVSDAALNFLTEIGFDPIYGARPLKRTIQKELETVVARGVLAGEYGDGDGIAVD 960
                 4568899**************************************************************************************985434579***********************************************************************************************986.445433333333499999***********************************************************************************************999988775 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   2.3e-05    0.0068      17      62 ..     274     321 ..     264     338 .. 0.77
   2 !   21.9   0.0   4.3e-08   1.3e-05       4      65 ..     665     737 ..     662     756 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.3e-05
   TIGR00764  17 idqviGqdeave.vikk.aakqkrnvlliGePGvGksmlakamaellp 62 
                 +d viG+d+ ++ +i+  + + k n +liG+PGvGk+ +a+ +a+ + 
  MMETSP1061-20121228|9106_1 274 LDPVIGRDDEIRrAIQIlSRRTKNNPVLIGDPGVGKTAIAEGIAQRMV 321
                 699***99877524444134567789**************99997655 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 4.3e-08
   TIGR00764   4 fetteeipvPerlidqviGqdeavevikkaakqkr...........nvlliGePGvGksmlakamaellpkee 65 
                  e t+ +++ +rl ++viGq+eavev+ +a+++ r            ++++G  GvGk+ l+ka++e++ + e
  MMETSP1061-20121228|9106_1 665 SERTRILTMGDRLSERVIGQQEAVEVVTEAVQRSRaglndptkpiaSLIFLGPTGVGKTELCKALSEFMFDTE 737
                 57788889999********************99984443333333336899****************986654 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.5e-08   4.3e-06     310     492 ..     294     479 ..     282     495 .. 0.69
   2 !    7.1   0.0    0.0013      0.38     271     334 ..     674     731 ..     661     737 .. 0.68

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.5e-08
   TIGR03922 310 qrskHlllaGPPGtGkttiArvvakiy.aG..lgvlrkpevrEvsRadlig..eyigeseaktnelidk....aLggvlFlDEayaLvekrdgakddfGleaidtLLarlEndRdrlvviiAGYekdlDklLevneGLrsRFtrkieFesYspdElveiakrmaeerdsvlddaAaealleaatklaqestp 492
                  + +  +l+G PG Gkt+iA+ +a+ + aG     l+  +++    a l++     ge e++ + ++++      + +lF+DE++++v  +  a    G     +LL      R +l  i+A   ++  + +e ++ L +RF++ +  +  sp++ v i + +  + +       +++ l aa kl+++  p
  MMETSP1061-20121228|9106_1 294 RTKNNPVLIGDPGVGKTAIAEGIAQRMvAGdvPDTLQGCKLIGLDLAALVAgaSMRGEFEERLKSVLEEvqnsDGEIILFIDEMHTVVGAGAAA----GSMDASNLLK-PALARGQLRCIGATTINEYRQYIEKDKALERRFQQ-VTIDQPSPEDTVSILRGLKPRYETHHGVRIRDEALLAAAKLSHRYIP 479
                 5667789**************9997541552223577777777777777742245677777777666641110445589*********884444....4444444443.334699***************************75.67777889999999887766666666666666666666666666665 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0013
   TIGR03922 271 aeaeLakqiGlervkeqvaalkssvevalvRaerGlavaqr.skHlllaGPPGtGkttiArvvak 334
                 +++  +++iG +++   v+ +      a+ R + Gl+ +++    l+++GP G Gkt + +++++
  MMETSP1061-20121228|9106_1 674 GDRLSERVIGQQEA---VEVVT----EAVQRSRAGLNDPTKpIASLIFLGPTGVGKTELCKALSE 731
                 55555555554433...33322....24568889999887624789*************999976 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.4   0.00024     0.072      32      56 ..     298     322 ..     273     385 .. 0.67
   2 !    6.1   0.0    0.0036         1       7      53 ..     682     732 ..     676     753 .. 0.70
   3 ?   -2.2   0.0       1.2   3.4e+02      81     110 ..     781     810 ..     773     822 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00024
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgv 56 
                   +l+G PG+Gkt++a+ ia+ + +
  MMETSP1061-20121228|9106_1 298 NPVLIGDPGVGKTAIAEGIAQRMVA 322
                 34789***************99854 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0036
   TIGR00635   7 iGqekvkeklqlfikaakk....rkealdhvllyGPPGlGkttlakiiake 53 
                 iGq++  e ++ +++ +++      + +  +++ GP G+Gkt l+k +++ 
  MMETSP1061-20121228|9106_1 682 IGQQEAVEVVTEAVQRSRAglndPTKPIASLIFLGPTGVGKTELCKALSEF 732
                 667666666666666555411113456778999***********9887665 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1.2
   TIGR00635  81 egdvlfiDeihrlskaveellypamedfkl 110
                 + +vl  De+ + ++ v +++ + ++d +l
  MMETSP1061-20121228|9106_1 781 PYSVLLFDEMEKAHPDVFNVMLQLLDDGRL 810
                 5689*******************9999776 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   5.4e-05     0.016      15      64 ..     275     320 ..     270     328 .. 0.83
   2 ?   -1.0   0.0      0.46   1.3e+02     114     142 ..     353     381 ..     345     390 .. 0.84
   3 ?    4.0   0.0     0.014         4      42      62 ..     711     731 ..     669     747 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.4e-05
   TIGR02928  15 drivhRdeqieelakalkpilrgsrpsnvliyGktGtGKtavtkkvlkel 64 
                 d + +Rd++i++  ++l+     ++ +n ++ G +G+GKta+++ + +++
  MMETSP1061-20121228|9106_1 275 DPVIGRDDEIRRAIQILSR----RTKNNPVLIGDPGVGKTAIAEGIAQRM 320
                 567899**99988776655....666788999***********9988775 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.46
   TIGR02928 114 kevfeelvkeleeredsliivLDEiDklv 142
                 +e  + + +e++++++ +i+ +DE+  +v
  MMETSP1061-20121228|9106_1 353 EERLKSVLEEVQNSDGEIILFIDEMHTVV 381
                 566789999***************99886 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.014
   TIGR02928  42 nvliyGktGtGKtavtkkvlk 62 
                 +++  G+tG+GKt   k++ +
  MMETSP1061-20121228|9106_1 711 SLIFLGPTGVGKTELCKALSE 731
                 57789********99888765 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.1       0.5   1.5e+02     128     203 ..     116     188 ..     101     248 .. 0.75
   2 ?    4.2   0.1     0.012       3.5      47      71 ..     296     320 ..     284     325 .. 0.85
   3 ?   -2.7   0.0       1.6   4.6e+02     242     271 ..     363     393 ..     355     418 .. 0.79
   4 ?   -2.8   3.8       1.7   4.9e+02      99     223 ..     489     608 ..     481     648 .. 0.59
   5 !   18.3   0.0   6.6e-07   0.00019       8      89 ..     675     754 ..     671     760 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.5
   TIGR00390 128 ivdkllppaknqfgeeeekdeeesakealrkklreGelddkeieievsekspseieilappeleevdenlqsllqn 203
                 ++d ll+pak++    + + +++++++ +++ + + ++  +e+e++++++  ++ +  ++++ + +   l  +l+ 
  MMETSP1061-20121228|9106_1 116 LLDLLLNPAKHK-AGDDAESARKAVEKVFKDVKCDVKVLRQELEMHLAQQPKMQGD--TASQQKTMGYSLPRVLEA 188
                 568899999988.5666666777777777777777888888888888888755544..455556666666666655 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.012
   TIGR00390  47 PknilmiGstGvGkteiarrlakla 71 
                   n ++iG  GvGkt ia  +a+ +
  MMETSP1061-20121228|9106_1 296 KNNPVLIGDPGVGKTAIAEGIAQRM 320
                 56889*************9999755 PP

  == domain 3    score: -2.7 bits;  conditional E-value: 1.6
   TIGR00390 242 vdrveesGiifideidkiakkg.essgadvs 271
                 v++ + + i+fide+  ++  g +  + d s
  MMETSP1061-20121228|9106_1 363 VQNSDGEIILFIDEMHTVVGAGaAAGSMDAS 393
                 5566667799*****9999888555556665 PP

  == domain 4    score: -2.8 bits;  conditional E-value: 1.7
   TIGR00390  99 dlvdaavklvkeekiekvkekaeeaaeerivdkllppaknqfgeeeekdeeesakealrkklreGelddkeieievsekspseieilap.peleevdenlqsllqnllsdkkkkrklkvkeakkvl 223
                 dlvd a   +k+e ++  k  + +++++ri+++ ++  + q ++ e+ +e ++a++   k+l    + dke+e   +e+++++++ +a  +++++++   +++ q +l  +k +r++ +++a ++ 
  MMETSP1061-20121228|9106_1 489 DLVDEACAKLKNELTS--KPTVLDEIDRRIIQMEMERLSLQ-SDYESGEEGQEANKDAGKRL---SVIDKELEELKNEQQALNLKWMAEkGGVDRIKDIKTDIAQVMLEIEKCEREFDLNKAAELK 608
                 6777777777766654..56788888888988888877777.33333333222222233333...3344444433344444566555431445555544444444445557888888888887764 PP

  == domain 5    score: 18.3 bits;  conditional E-value: 6.6e-07
   TIGR00390   8 aeldkyiiGqdeakkavaialrnryrrlqleeelkdevvPknilmiGstGvGkteiarrlakla...eaPfikveatkftevGyv 89 
                 ++l + +iGq+ea   v+ a++    r  l++  k       ++ +G+tGvGkte+ + l+ ++   e   i+++ + + e   v
  MMETSP1061-20121228|9106_1 675 DRLSERVIGQQEAVEVVTEAVQR--SRAGLNDPTKPI---ASLIFLGPTGVGKTELCKALSEFMfdtEDAIIRIDMSEYMEKHTV 754
                 78999************999864..577777776642...46899****************987444677899999999886555 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.15        43      26      44 ..     301     319 ..     281     362 .. 0.84
   2 ?   -2.7   0.0       2.4   6.9e+02     166     222 ..     419     456 ..     404     479 .. 0.55
   3 ?    4.5   0.0     0.015       4.4      21      42 ..     709     730 ..     688     737 .. 0.74
   4 !    7.6   0.0    0.0017      0.51      98     134 ..     772     810 ..     768     833 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.15
   TIGR02640  26 lrGPaGtGktslalhvakk 44 
                 l+G  G Gkt++a  +a++
  MMETSP1061-20121228|9106_1 301 LIGDPGVGKTAIAEGIAQR 319
                 89999*********99986 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.4
   TIGR02640 166 vhetqdalldrlvtisvdykdeetetaivraktdvaeesaaaivrlvrelraegdek 222
                                     ++++ ++   +++ +++ s ++ v+++r l+  + e+
  MMETSP1061-20121228|9106_1 419 Y------------------IEKDKALERRFQQVTIDQPSPEDTVSILRGLK-PRYET 456
                 3..................33444444445566666666666666666666.34444 PP

  == domain 3    score: 4.5 bits;  conditional E-value: 0.015
   TIGR02640  21 gypvhlrGPaGtGktslalhva 42 
                   ++ + GP+G Gkt l  +++
  MMETSP1061-20121228|9106_1 709 IASLIFLGPTGVGKTELCKALS 730
                 457889***********99886 PP

  == domain 4    score: 7.6 bits;  conditional E-value: 0.0017
   TIGR02640  98 rltlavreG..ftlvydefsrskPeannvllsvleekvl 134
                 +lt avr      l++de+++++P + nv+l +l+++ l
  MMETSP1061-20121228|9106_1 772 QLTDAVRRKpySVLLFDEMEKAHPDVFNVMLQLLDDGRL 810
                 688888764225799*******************99866 PP

>> TIGR00012  L29: ribosomal protein L29
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   4.9e-05     0.014      10      50 ..     550     589 ..     544     593 .. 0.86
   2 ?    3.2   0.0     0.067        20      16      37 ..     844     865 ..     842     870 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.9e-05
   TIGR00012  10 LakklkelKkeLfeLRfqkatgqlekphrIrqvRrdIARll 50 
                 ++k+l+elK+e+  L+++  + ++    rI+ ++ dIA+++
  MMETSP1061-20121228|9106_1 550 IDKELEELKNEQQALNLK-WMAEKGGVDRIKDIKTDIAQVM 589
                 689************955.55566699************97 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.067
   TIGR00012  16 elKkeLfeLRfqkatgqlekph 37 
                 e  ke ++ R+++a++ + kp 
  MMETSP1061-20121228|9106_1 844 EAQKEMMRERVMAAMRDKFKPE 865
                 7889*************99996 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.015       4.3      28      63 ..     287     321 ..     277     343 .. 0.82
   2 !   10.5   0.0   0.00024     0.069      39      79 ..     710     750 ..     684     761 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.015
   TIGR03420  28 alrelaeakaerllylwGesgsGksHLLqAacaaae 63 
                 a+ +++++++++   l+G++g+Gk+ + +++++++ 
  MMETSP1061-20121228|9106_1 287 AI-QILSRRTKNNPVLIGDPGVGKTAIAEGIAQRMV 321
                 33.445888899999***************999886 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00024
   TIGR03420  39 rllylwGesgsGksHLLqAacaaaeeagksaiylplkelaq 79 
                  +l + G++g+Gk+ L +A+++ + +++ ++i ++++e  +
  MMETSP1061-20121228|9106_1 710 ASLIFLGPTGVGKTELCKALSEFMFDTEDAIIRIDMSEYME 750
                 567899****************************9999765 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.021       6.1      29      60 ..     289     320 ..     271     333 .. 0.79
   2 !    9.7   0.0   0.00033     0.097      15      58 ..     680     731 ..     676     738 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.021
   TIGR02397  29 aikknkiahayLfsGprGvGKTsiArilAkal 60 
                 +i +++ ++  ++ G  GvGKT+iA  +A+ +
  MMETSP1061-20121228|9106_1 289 QILSRRTKNNPVLIGDPGVGKTAIAEGIAQRM 320
                 4677888888899************9888765 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00033
   TIGR02397  15 dliGqehvvktLknaikknkia........hayLfsGprGvGKTsiArilAk 58 
                  +iGq+  v+++++a+++++           + +f Gp GvGKT + + l++
  MMETSP1061-20121228|9106_1 680 RVIGQQEAVEVVTEAVQRSRAGlndptkpiASLIFLGPTGVGKTELCKALSE 731
                 699*************99987533333333589*************999886 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0    0.0012      0.35      54     105 ..     264     315 ..     254     344 .. 0.86
   2 ?    4.0   0.0     0.012       3.4      74     202 ..     695     808 ..     663     814 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0012
   TIGR02902  54 plseksrpksfdeiiGqeeGikalkaalcGpnpqhviiyGppGvGktaaarl 105
                  ++e++   ++d +iG+++ i+     l     +  ++ G pGvGkta a  
  MMETSP1061-20121228|9106_1 264 DFTERAEQGKLDPVIGRDDEIRRAIQILSRRTKNNPVLIGDPGVGKTAIAEG 315
                 57899999999**********998889999999999999*********9865 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.012
   TIGR02902  74 ikalkaalcGpn.p.qhviiyGppGvGktaaarlvleeakksaaspfkeeakfveidattarfderGiadpliGsvhdpiyqGaGklGlaGipqpkaGavtkahGGvlfideiGelhpvqmnkllkvledr 202
                 ++  +a l  p  p   +i  Gp GvGkt          k  ++  f+ e + + id +   + e+     l+G+   p y G  + G+       + av +    vl+ de+ + hp   n +l++l+d 
  MMETSP1061-20121228|9106_1 695 VQRSRAGLNDPTkPiASLIFLGPTGVGKTELC-------KALSEFMFDTEDAIIRIDMS--EYMEKHTVARLLGA--PPGYVGYDEGGQL------TDAVRRKPYSVLLFDEMEKAHPDVFNVMLQLLDDG 808
                 33344555555323234566788888888543.......33344456666666777654..34455555566665..3555555444432......46788888888888999999999999999888885 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.4      0.21        62      92     188 ..     125     230 ..      58     241 .. 0.59
   2 ?    4.4   0.0     0.023       6.7     200     220 ..     298     318 ..     281     328 .. 0.72
   3 ?   -1.6   1.6       1.6   4.6e+02      18      87 ..     498     564 ..     487     632 .. 0.42
   4 ?    8.8   0.0    0.0011      0.31     198     212 ..     710     723 ..     672     726 .. 0.70
   5 ?   -1.6   0.0       1.5   4.5e+02     134     187 ..     886     940 ..     840     950 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.21
   TIGR03499  92 eekaaeaaqeaekkleeae...eelrkelkalkellekqlselal......eeedperakllkklleagvseelarelleklke...kedaeeareklreaLekklsvk 188
                 ++ka + a++a+k+    e   ++++ ++k l++ le  l++  +      ++++  + +l + l++a   ++++ +   ++++      +e+ r +++++L++++++ 
  MMETSP1061-20121228|9106_1 125 KHKAGDDAESARKAV---EkvfKDVKCDVKVLRQELEMHLAQQPKmqgdtaSQQKTMGYSLPRVLEAARSAKSTLGDSFVSAEAlllGLVKEDDRFTTKALLKQNIKYT 230
                 222222233333333...1334777777777777777766665556555555555555555555555555555555444444445555555555555555555555555 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.023
   TIGR03499 200 viaLvGptGvGKTTTlAKLAa 220
                   +L+G +GvGKT     +A+
  MMETSP1061-20121228|9106_1 298 NPVLIGDPGVGKTAIAEGIAQ 318
                 459*********965555555 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 1.6
   TIGR03499  18 vkeelGpdavIlstrkvrkgglfskkkvevvaaideeesasaaseeeeakkaleeaepkklskaeekeek 87 
                  k+el ++ ++l   +++++ +++ ++ ++    d+e+ ++ ++++++a k+l+  +++ ++ ++e+++ 
  MMETSP1061-20121228|9106_1 498 LKNELTSKPTVLD--EIDRR-IIQMEMERLSLQSDYESGEEGQEANKDAGKRLSVIDKELEELKNEQQAL 564
                 4444444444443..33333.4444444444444444433333333333333333333333322222111 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 0.0011
   TIGR03499 198 ggviaLvGptGvGKT 212
                    ++++GptGvGKT
  MMETSP1061-20121228|9106_1 710 A-SLIFLGPTGVGKT 723
                 3.679*********9 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 1.5
   TIGR03499 134 eeedperakllkklleagvseelarelleklke.kedaeeareklreaLekklsv 187
                 e  + e+++l+k+l e+++s ++ ++ l+ l e   d+    + l++ ++k+l++
  MMETSP1061-20121228|9106_1 886 EIVKLEIRRLEKRLAEKEISISVSDAALNFLTEiGFDPIYGARPLKRTIQKELET 940
                 5556678889999999999999999999988888667777777777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1010 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       296  (0.0721599); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.75u 0.17s 00:00:00.92 Elapsed: 00:00:00.51
# Mc/sec: 2613.90
//
Query:       MMETSP1061-20121228|9116_1  [L=1019]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1019 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.48
# Mc/sec: 2802.02
//
Query:       MMETSP1061-20121228|9118_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.23
# Mc/sec: 2295.46
//
Query:       MMETSP1061-20121228|9126_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.17
# Mc/sec: 597.83
//
Query:       MMETSP1061-20121228|9123_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00062   16.9   0.1    0.00091   16.4   0.1    1.2  1  TIGR03575 selen_PSTK_euk: L-seryl-tRNA(Sec) kinase
  ------ inclusion threshold ------
      0.015   12.5   0.0      0.021   12.0   0.0    1.2  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      0.023   11.6   0.0      0.036   10.9   0.0    1.2  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
      0.028   11.7   0.0      0.041   11.2   0.0    1.2  1  TIGR03574 selen_PSTK: L-seryl-tRNA(Sec) kinase
      0.037   11.5   0.1      0.062   10.8   0.1    1.3  1  TIGR01351 adk: adenylate kinases
      0.039   10.2   0.0      0.055    9.7   0.0    1.3  1  TIGR01663 PNK-3'Pase: polynucleotide kinase 3'-phosphatase
       0.04   11.8   0.0      0.064   11.1   0.0    1.3  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR03575  selen_PSTK_euk: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.6e-06   0.00091       2      32 ..     227     259 ..     226     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.6e-06
   TIGR03575   2 cvlc.GlpaaGkstlarslsatlrrer.gwava 32 
                 c++c Glp++Gkst+a sl+a + ++  gw v+
  MMETSP1061-20121228|9123_1 227 CIVCmGLPGSGKSTFANSLAASFPHKTgGWLVG 259
                 88888****************997665268776 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   3.6e-05     0.021     120     147 ..     227     254 ..     205     270 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3.6e-05
   TIGR03596 120 ralvvGiPNvGKStliNrlakkkvakvg 147
                  ++++G+P  GKSt+ N+la     k+g
  MMETSP1061-20121228|9123_1 227 CIVCMGLPGSGKSTFANSLAASFPHKTG 254
                 46889**************987666655 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   6.1e-05     0.036     145     171 ..     226     252 ..     204     254 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 6.1e-05
   TIGR02788 145 kniiisGgtgsgKTTflkalvkliPke 171
                 + i+ +G +gsgK Tf ++l   +P++
  MMETSP1061-20121228|9123_1 226 RCIVCMGLPGSGKSTFANSLAASFPHK 252
                 46999******************9975 PP

>> TIGR03574  selen_PSTK: L-seryl-tRNA(Sec) kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.9e-05     0.041       2      23 ..     228     249 ..     227     256 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.9e-05
   TIGR03574   2 iiltGlPgvGkstfskelakkl 23 
                 i+  GlPg+Gkstf+ +la  +
  MMETSP1061-20121228|9123_1 228 IVCMGLPGSGKSTFANSLAASF 249
                 7789*************99766 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00011     0.062       2      23 ..     228     249 ..     227     255 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
   TIGR01351   2 lvllGpPGsGKGTqakrlaekl 23 
                 +v +G PGsGK+T a+ la ++
  MMETSP1061-20121228|9123_1 228 IVCMGLPGSGKSTFANSLAASF 249
                 689*************998765 PP

>> TIGR01663  PNK-3'Pase: polynucleotide kinase 3'-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   9.3e-05     0.055     363     385 ..     224     246 ..     186     256 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 9.3e-05
   TIGR01663 363 spevvvavGlpGaGkstflkkfl 385
                  p  +v +GlpG+Gkstf ++  
  MMETSP1061-20121228|9123_1 224 VPRCIVCMGLPGSGKSTFANSLA 246
                 578899************98865 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00011     0.064       3      26 ..     228     251 ..     226     258 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00011
   TIGR02173   3 ivisGpPGsGkttvakilaeklsl 26 
                 iv  G PGsGk+t a+ la ++  
  MMETSP1061-20121228|9123_1 228 IVCMGLPGSGKSTFANSLAASFPH 251
                 7889**************987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        53  (0.0129205); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1165.28
//
Query:       MMETSP1061-20121228|9125_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-14   50.6   0.4      7e-14   49.8   0.3    1.4  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.3   1.7e-17     7e-14       2      56 ..     276     330 ..     275     331 .. 0.93

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 1.7e-17
   TIGR01557   2 krvvWteelhrrFlqAvqklGgedkatPkkIlelm.kveklTreqvkSHlQkyrlk 56 
                 kr  W e+lhr F+ A+   G +++  P+ I e m k e++T e +kSHlQkyrl+
  MMETSP1061-20121228|9125_1 276 KRFTWPEDLHRDFVSAIFDVGLKHS-SPSTIMEHMpKHEQITTERIKSHLQKYRLH 330
                 7899******************666.********967899**************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 3487.56
//
Query:       MMETSP1061-20121228|9130_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.23
# Mc/sec: 2857.85
//
Query:       MMETSP1061-20121228|9135_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-26   88.7   0.0    1.2e-25   88.2   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00056   17.2   0.0      0.001   16.4   0.0    1.5  1  TIGR02415 23BDH: acetoin reductases
      0.003   15.1   0.0     0.0043   14.6   0.0    1.5  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase


Domain annotation for each model (and alignments):
>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.2   0.0   8.9e-29   1.2e-25      92     255 .]       1     182 [.       1     182 [. 0.82

  Alignments for each domain:
  == domain 1    score: 88.2 bits;  conditional E-value: 8.9e-29
   TIGR01500  92 innaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkel............qglektvvnlssLcaik.pfkswalYCaskaaRdmffqvLaleek....ed...vkvLnYapGvlDtdmqsqvree.asdpdvkalyrelkedgklvdpkrsaekllkllea...dkfksGshvDyyD 255
                 +nnaG+lg+++         + +++  d nvts++ l+  + + +++             q  ++t+v +ssL ai   f s+  Y a+k+aR+ +  ++a ee     +d   + +LnYapG+l+t m++q+r     d + k+ +     +++l +p  sa kl++lle+   ++++sG+hvD+yD
  MMETSP1061-20121228|9135_1   1 VNNAGSLGHLGPCLT-SPSLEDMRQSIDFNVTSALWLSVRFARHIQQQqqqqpqpqqprkQRRNVTIVHVSSLVAISdDFVSMGIYSAGKSARERYHTMMAREEGddddDDdrsLTILNYAPGPLETAMTTQIRGAdELDAELKKQF-----QKTLEEPGDSALKLIRLLEEkdyFEWESGAHVDFYD 182
                 69**********999.556788999******************9987666666666555446789***********637************************98654321344789****************96413344444444.....58999*************973335679********9 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   7.5e-07     0.001      82     195 ..       1     136 [.       1     171 [. 0.59

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 7.5e-07
   TIGR02415  82 vnnaG.valvtpilei.teeeleklynvnvkgvlf.......Giqaaae......kfkklkhkGkiinaasiagv.egspelsaysstkfavrgltqtaakeLakk......gitvnayaPGivktemreeidekl 195
                 vnnaG +++  p l++ + e++ +  + nv++ l+        iq  ++      + +k++ +  i+  +s+ ++   +  +++ys+ k a   +    a+e  ++        t+  yaPG  +t+m+ +i  + 
  MMETSP1061-20121228|9135_1   1 VNNAGsLGHLGPCLTSpSLEDMRQSIDFNVTSALWlsvrfarHIQQQQQqqpqpqQPRKQRRNVTIVHVSSLVAIsDDFVSMGIYSAGKSARERYHTMMAREEGDDdddddrSLTILNYAPGPLETAMTTQIRGAD 136
                 5666644555554443145777777777777777743332222333332111110344556667899999987761568899*********98877777776654312222269*****************96432 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.1e-06    0.0043     123     191 ..      59     134 ..       1     170 [. 0.82

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.1e-06
   TIGR01830 123 ikkrsGriinissvvgllGna.gqanYaasKaGligltkslakEla......srnitvnavaPGfietdmteklse 191
                  ++r+  i+++ss+v+++        Y+a K+     +  +a+E +       r++t+   aPG +et mt ++  
  MMETSP1061-20121228|9135_1  59 KQRRNVTIVHVSSLVAISDDFvSMGIYSAGKSARERYHTMMAREEGddddddDRSLTILNYAPGPLETAMTTQIRG 134
                 4677899**********988615668******************98444433589****************98863 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1181.62
//
Query:       MMETSP1061-20121228|9136_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|9132_1  [L=855]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-12   44.1   0.0    2.3e-12   43.4   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.1e-07   27.5   0.0    8.6e-07   26.4   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   1.1e-15   2.3e-12      79     181 ..       8     101 ..       4     113 .. 0.87

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 1.1e-15
   TIGR03903  79 aetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivle 181
                 ae +rL+ q+L a+   h++G++hRDLk +n + s + ++s+ k++DFG++      ++        ++e +G+P   aPe +Rg     + D++a G+i + 
  MMETSP1061-20121228|9132_1   8 AECARLIKQMLCAVRYLHSKGIIHRDLKLENFLFSSTAQDSELKMIDFGLSKHFR-YGE-------IQHEAVGTPYTVAPEVIRGQY-DERCDIWAIGVIAFL 101
                 6889*********************************************986543.233.......579****************85.679999999999765 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   4.2e-10   8.6e-07      93     139 ..      11      61 ..       3      92 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 4.2e-10
   TIGR03724  93 lellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkks 139
                  +l+k++  +v  lH++gi+h Dl  +N++++    d++l +iDfGL+k+ 
  MMETSP1061-20121228|9132_1  11 ARLIKQMLCAVRYLHSKGIIHRDLKLENFLFSstaqDSELKMIDFGLSKHF 61 
                 477888889999******************965666899*********984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (855 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 3134.74
//
Query:       MMETSP1061-20121228|9139_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1082.31
//
Query:       MMETSP1061-20121228|9140_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 215.98
//
Query:       MMETSP1061-20121228|9137_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       300  (0.0731351); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2106.09
//
Query:       MMETSP1061-20121228|9134_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 2734.06
//
Query:       MMETSP1061-20121228|9138_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2283.99
//
Query:       MMETSP1061-20121228|9144_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.5   0.0      0.011   12.5   0.0    1.1  1  TIGR02860 spore_IV_B: stage IV sporulation protein B
      0.032   11.7   0.0      0.036   11.5   0.0    1.2  1  TIGR01713 typeII_sec_gspC: general secretion pathway protein C


Domain annotation for each model (and alignments):
>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   5.3e-06     0.011      95     153 ..       3      64 ..       1      96 [. 0.75

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5.3e-06
   TIGR02860  95 GqsiGvklntkGvlvvGfsdietekG...kiesPaeeagiqvGDlilkvngekikeeedvak 153
                 Gq + v+++ +     G++  + ++G    i+ P +++g++ GD++l++ng k  e e  +k
  MMETSP1061-20121228|9144_1   3 GQEMRVQVKRSSEKKSGYAVEKRSDGfyyVISVPPKKSGVKPGDRVLEINGIKYTEFESAKK 64 
                 555666666666666677777777773334678******************99887766554 PP

>> TIGR01713  typeII_sec_gspC: general secretion pathway protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.7e-05     0.036     185     233 ..      12      66 ..       3      91 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.7e-05
   TIGR01713 185 kkddkleGyrlnpgkdpslF......ekvgLqdgDiavalNgldlrdeeeakqvl 233
                 +  +k +Gy ++ + d+  +      +k+g ++gD ++ +Ng++ ++ e ak++ 
  MMETSP1061-20121228|9144_1  12 RSSEKKSGYAVEKRSDGFYYvisvppKKSGVKPGDRVLEINGIKYTEFESAKKAN 66 
                 45689999999988887666444444699******************99999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 599.95
//
Query:       MMETSP1061-20121228|9146_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 944.76
//
Query:       MMETSP1061-20121228|9148_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.31
# Mc/sec: 566.28
//
Query:       MMETSP1061-20121228|9153_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 996.52
//
Query:       MMETSP1061-20121228|9150_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.27    9.7   3.3       0.22    9.9   0.5    2.3  3  TIGR02459 CbtB: cobalt transporter subunit CbtB (proposed)


Domain annotation for each model (and alignments):
>> TIGR02459  CbtB: cobalt transporter subunit CbtB (proposed)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.45   1.8e+03      25      33 ..      98     106 ..      82     118 .. 0.62
   2 ?   -2.4   0.0      0.38   1.6e+03      13      25 ..     250     262 ..     242     266 .. 0.45
   3 ?    9.9   0.5   5.4e-05      0.22       3      42 ..     265     304 ..     261     308 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.45
   TIGR02459  25 aalLGaflv 33 
                  ++LG+ +v
  MMETSP1061-20121228|9150_1  98 PVALGLAVV 106
                 455666665 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.38
   TIGR02459  13 svsaarlaaaiva 25 
                  + ++ ++a+++a
  MMETSP1061-20121228|9150_1 250 LTTTGTATASVSA 262
                 3333344444433 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 5.4e-05
   TIGR02459   3 tnsstssaassvsaarlaaaivaalLGaflvyfvGfshid 42 
                 t s+ ss +ss+s  + + a++++  G++lv + G++ ++
  MMETSP1061-20121228|9150_1 265 TDSEGSSVSSSSSSPGNRNAVLSIGFGTILVAVLGYAVVS 304
                 5677789999999999********************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1765.35
//
Query:       MMETSP1061-20121228|9156_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.14s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 359.30
//
Query:       MMETSP1061-20121228|9151_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-09   33.9   2.3    4.7e-05   21.4   0.2    2.3  2  TIGR00264 TIGR00264: alpha-NAC homolog


Domain annotation for each model (and alignments):
>> TIGR00264  TIGR00264: alpha-NAC homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   8.1e-06     0.033       3      69 ..      49     113 ..      47     124 .. 0.75
   2 !   21.4   0.2   1.1e-08   4.7e-05      73     115 ..     157     199 ..     133     200 .] 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.1e-06
   TIGR00264   3 PgkvnPkqlkkmqkmmkqlGlemedldveeviiklddeelifknPkvsvleilGvktyqitGkakke 69 
                 P  +  +  kk +k+m++lG++     + +v +k ++ +++f   k +v++    +ty i G+ak e
  MMETSP1061-20121228|9151_1  49 PPSIQNRNEKKARKAMQKLGMKPVPG-ILRVTVKKSR-NVLFAINKPDVFKSSSTDTYVIFGEAKSE 113
                 667888999***********976543.5566666554.56666666677888899*********966 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 1.1e-08
   TIGR00264  73 eeeeiseddielvmkqanvskeearraleeagGdlaeailkle 115
                 +e+ i  +di+lvm q++ ++ +a   l+e + d+ ++i+ l+
  MMETSP1061-20121228|9151_1 157 DETGIKPEDIDLVMSQVGCNRVKAVTGLRENDNDVVNTIMALS 199
                 3558999*********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1147.73
//
Query:       MMETSP1061-20121228|9155_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 433.68
//
Query:       MMETSP1061-20121228|9158_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.16s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 538.96
//
Query:       MMETSP1061-20121228|9159_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 797.21
//
Query:       MMETSP1061-20121228|9157_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1552.01
//
Query:       MMETSP1061-20121228|9162_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 556.65
//
Query:       MMETSP1061-20121228|9164_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.33
# Mc/sec: 679.94
//
Query:       MMETSP1061-20121228|9165_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   14.9   0.0     0.0031   14.7   0.0    1.1  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.6e-07    0.0031      41      84 ..      47      91 ..      38     121 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.6e-07
   TIGR01934 41 ekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkkake 84
                 +vlDva+G G+la++l +    +++ +vD+ +  Le  +k+ + 
  MMETSP1061-20121228|9165_1 47 CRVLDVAGGKGELAFQLLNLNDvRSCHVVDPRPLSLERFRKRRSR 91
                689****************99999*******99999998888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 868.93
//
Query:       MMETSP1061-20121228|9167_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 646.75
//
Query:       MMETSP1061-20121228|9169_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 849.13
//
Query:       MMETSP1061-20121228|9168_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1573.31
//
Query:       MMETSP1061-20121228|9166_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2121.25
//
Query:       MMETSP1061-20121228|9172_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-23   78.8   0.1    1.3e-22   78.2   0.1    1.2  1  TIGR00160 MGSA: methylglyoxal synthase


Domain annotation for each model (and alignments):
>> TIGR00160  MGSA: methylglyoxal synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.1   3.1e-26   1.3e-22       5     121 ..     137     258 ..     133     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 3.1e-26
   TIGR00160   5 ialiahdkkkedlvnfvkkhkellkkyklyatGttGelier....atglai.ekllsGPlGGdqqigaliaegkidlviflrdPltaqPhePdvkallrladvyniPlainlataeiliksl 121
                 +al++h++ k ++ +fv ++k++lkk+ l  t  t  ++ +    + ++    + +sGPlGGd  + a ++ g++  ++f++dP+t+ Ph+ d+ +l+r a+v n  +a+  +ta ++++  
  MMETSP1061-20121228|9172_1 137 LALVSHNEMKTTMKQFVINYKHILKKFRLTGTQSTMIMLAEvfesDPDIVFgPTCKSGPLGGDAELVAMMTSGQLGGLLFFQDPMTSHPHQCDIDCLVRQAQVNNTVIATTPTTAIAIVELF 258
                 79****************************99999877665221044444434899***********************************************************9999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1479.38
//
Query:       MMETSP1061-20121228|9170_1  [L=872]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   11.6   0.1      0.054   10.8   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.3e-05     0.054      72     138 ..     650     728 ..     625     738 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.3e-05
   TIGR03724  72 kkivmeyiegkklkdlleekel......ellkevGelvgklH......kagivhgDlttsNiivkddklyliDfGLgkk 138
                  +++ ey +gk+l +l +++++      e+++++++ ++ +H      ++ +vh D+ ++N++  +++l l Df +g +
  MMETSP1061-20121228|9170_1 650 HSVLTEYADGKRLGELADKSKKtpmkrlEIARDIANGLADVHgidgdgNTTFVHLDVNPANVVSVNQTLKLNDFNIGII 728
                 578899*******999999887899999**************555544467***********************99866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 3110.66
//
Query:       MMETSP1061-20121228|9163_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2    8.8   9.5       0.36    7.9   6.6    1.3  1  TIGR02855 spore_yabG: sporulation peptidase YabG
       0.75    5.8  12.0        1.1    5.3   8.3    1.2  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
          1    7.1  21.9       0.11   10.3  11.8    1.8  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
        2.1    4.9   5.5        4.3    3.9   3.8    1.4  1  TIGR00887 2A0109: phosphate:H+ symporter
        8.7    2.7  13.1         15    2.0   9.1    1.3  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR02855  spore_yabG: sporulation peptidase YabG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   6.6   0.00044      0.36      31      96 ..       9      74 ..       2      82 .. 0.57

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00044
   TIGR02855 31 avlkGeelrliadakledlekvkeeekkkrkkeekekieeslkllrqdrklkkekkeyratekyke 96
                a+ +G++ rl+a  + +  ++ +++++++r +++++++++  ++ +q++++++++++ ++++++++
  MMETSP1061-20121228|9163_1  9 AMPHGVDPRLVAFFQAQQQQQQQQQQQQQRIQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 74
                566899999999888777776666666665555555555544444444444433333333333333 PP

>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   8.3    0.0014       1.1     666     709 ..      27      70 ..       8     120 .. 0.50

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0014
   TIGR04154 666 eeeaseqslkvetkeeeenaseaeaaaeadnaasaaeafaeeee 709
                 ++++++q++++  ++++++ ++++++++++++++++++++++++
  MMETSP1061-20121228|9163_1  27 QQQQQQQQQQQRIQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 70 
                 11111111111111111111111111111111111111111111 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3  11.8   0.00013      0.11      53     105 ..      24      75 ..      11     143 .. 0.45
   2 ?   -2.5   0.1       1.1   8.6e+02      72      72 ..     519     519 ..     461     571 .. 0.57

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00013
   TIGR03499  53 eeesasaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekk 105
                  ++ +++++++++ ++ ++++++++++++++++++++++++++++++q+++++
  MMETSP1061-20121228|9163_1  24 AQQ-QQQQQQQQQQQRIQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 75 
                 333.2222222222222222222222222222222222222222222222222 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.1
   TIGR03499  72 e 72 
                 e
  MMETSP1061-20121228|9163_1 519 E 519
                 1 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   3.8    0.0053       4.3     215     269 ..      17      71 ..       4      87 .. 0.54

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0053
   TIGR00887 215 alalyfrltipetarytadvakdveqaasdieavlqkkaeaeedevekaskevev 269
                  l ++f+ + +++++++ + ++ ++q+++++++++q+++++++++ ++++++++ 
  MMETSP1061-20121228|9163_1  17 RLVAFFQAQQQQQQQQQQQQQRIQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 71 
                 5667787777776666666555555444444444444444444433333333332 PP

>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   9.1     0.018        15     330     387 ..      22      79 ..      17     137 .. 0.44

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.018
   TIGR00860 330 vvhkksakkkrklllerlarllkkkeegeekrrpaleakelsslelrakkggedlesk 387
                    ++++++++++ ++r++++++++++++++++++ ++++ ++ + + ++++++ +  
  MMETSP1061-20121228|9163_1  22 FQAQQQQQQQQQQQQQRIQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTNGI 79 
                 4444444444444445555544444444444433333333333333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1105  (0.269381); expected 82.0 (0.02)
Passed bias filter:                      383  (0.0933691); expected 82.0 (0.02)
Passed Vit filter:                       133  (0.0324232); expected 4.1 (0.001)
Passed Fwd filter:                        26  (0.00633837); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.79u 0.20s 00:00:00.99 Elapsed: 00:00:00.65
# Mc/sec: 1230.54
//
Query:       MMETSP1061-20121228|9175_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 719.34
//
Query:       MMETSP1061-20121228|9177_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 448.76
//
Query:       MMETSP1061-20121228|9176_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-05   18.9   0.0    7.4e-05   18.5   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      0.001   16.4   0.1      0.012   12.9   0.0    2.0  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.6e-08   7.4e-05      41     174 ..     155     284 ..     114     298 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.6e-08
   TIGR03903  41 vaLlDsGeaedgllFavFeyveGrtlrev..LaadGaLpaaetgrLm.lqvLDalaaahda.GvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepv.taksDlYa 174
                 v  +++   ++++l+ +  + +G  l++   La  G  + ++ +r++  q+L++l   h++  + hRD+k  n +v+ ++      + D  ++ ++p+ +      + ++    G+P++  Pe L + p   ak D++a
  MMETSP1061-20121228|9176_1 155 VCRIEEALKDENYLYIITPWCKGGSLADNipLAPSGLFSVQDQARIIfKQILEGLNYLHNHhRICHRDIKTANFLVAESGR---VLIGDLAMSFVMPEGG------IVKDIGKFGTPPFMVPEILMNQPFdGAKCDFWA 284
                 5556666677788999999999999998645899********9997637**********86269*************9985...4567888888877655......56677789************9997358899987 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     6e-06     0.012      94     137 ..     200     245 ..     191     250 .. 0.77
   2 ?    1.0   0.0     0.026        54      27      63 ..     320     356 ..     309     361 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 6e-06
   TIGR03724  94 ellkevGelvgklHka.givhgDlttsNiivkddklyli.DfGLgk 137
                  ++k++ e ++ lH++ +i+h D+ t+N++v ++  +li D+ ++ 
  MMETSP1061-20121228|9176_1 200 IIFKQILEGLNYLHNHhRICHRDIKTANFLVAESGRVLIgDLAMSF 245
                 577888889999**8537*************766655554888775 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.026
   TIGR03724  27 kKsYrhpelDeklrkeRtrkEarllseakkagvntPv 63 
                 +K+  ++ +De + + R  +E+++l ++ ++ vn P 
  MMETSP1061-20121228|9176_1 320 SKERHNELVDEIIGEVRDPQEFHALHTVMQHIVNMPE 356
                 5555566679999999***************999995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1901.62
//
Query:       MMETSP1061-20121228|9174_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.10s 00:00:00.35 Elapsed: 00:00:00.34
# Mc/sec: 1843.97
//
Query:       MMETSP1061-20121228|9181_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 373.01
//
Query:       MMETSP1061-20121228|9180_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 1299.27
//
Query:       MMETSP1061-20121228|9182_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-29  100.5   0.0    2.9e-29  100.0   0.0    1.2  1  TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
      1e-25   88.3   0.0    1.5e-25   87.8   0.0    1.2  1  TIGR03449 mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
    7.1e-24   82.3   0.0    1.2e-23   81.6   0.0    1.3  1  TIGR03088 stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
    2.3e-22   77.3   0.0    3.4e-22   76.7   0.0    1.1  1  TIGR04063 stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family
    2.6e-19   67.4   0.0    4.1e-19   66.8   0.0    1.3  1  TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family
    1.5e-17   61.5   0.0    2.1e-17   61.0   0.0    1.1  1  TIGR04157 glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system
    2.1e-15   54.5   0.0    2.4e-14   51.1   0.0    2.0  1  TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
    1.6e-12   44.7   0.0      1e-11   42.0   0.0    2.0  2  TIGR02095 glgA: glycogen/starch synthases, ADP-glucose type
    7.4e-11   39.3   0.0    1.1e-10   38.8   0.0    1.2  1  TIGR04005 wcaL: colanic acid biosynthesis glycosyltransferase WcaL
    2.1e-07   27.9   0.0    4.4e-07   26.9   0.0    1.5  2  TIGR02472 sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain
    3.9e-07   26.9   0.0    5.4e-07   26.5   0.0    1.1  1  TIGR02918 TIGR02918: accessory Sec system glycosylation protein GtfA
    9.2e-07   26.2   0.0    1.9e-06   25.2   0.0    1.5  1  TIGR03087 stp1: sugar transferase, PEP-CTERM/EpsH1 system associated
    1.2e-06   24.8   0.0    1.6e-06   24.3   0.0    1.1  1  TIGR02470 sucr_synth: sucrose synthase
  ------ inclusion threshold ------
      0.026   10.1   0.0      0.036    9.6   0.0    1.1  1  TIGR02468 sucrsPsyn_pln: sucrose phosphate synthase


Domain annotation for each model (and alignments):
>> TIGR03999  thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   0.0   9.8e-32   2.9e-29     130     360 ..     264     487 ..     138     503 .. 0.72

  Alignments for each domain:
  == domain 1    score: 100.0 bits;  conditional E-value: 9.8e-32
   TIGR03999 130 adpslkevvrfsieksdavtavsesLkeetlellevkkeievipnFvdteeykkkkkek.lkekl.gieedekvlihvsnfRkvkrvedvvevFekvqkevkakLllvGdGPerseaeelvkelgledrvlflGkq..deveellslsDllllpsekesFGLaaLeamacgvpviasnvgGlpevveegetGflvevgdveemaekalklledeeklqelkkaalekakerfese 360
                  ++   +++rf+ +++d   + s ++++e ++      +++v    +dte++ +k k++ +++ +   ++d+ ++++v  +   kr++dv ++ ek+    +a+  +vG GP+++e e+  + +    +  flG+   de+++ ++ +D +++ps++e+ G ++Le+ma gvpv+a+n+gG+p +++++++ flve+gd++   ++ lk lede+  +++ kaa+++a er+  e
  MMETSP1061-20121228|9182_1 264 IERLAWSLLRFAHTRADLTLVTSPQVQQELIDN--GIPRVDVWRKGIDTERFDPKYKNNrMRKVMsDNNPDDFLMVYVGRLGAEKRIKDVRDILEKM---PNARFAVVGKGPQKEELEKYFEGT----KTVFLGQRsgDELSQAFASADAFIMPSDSETLGFVVLESMASGVPVVAANAGGIPSIITNEKDSFLVETGDIDGYVKR-LKDLEDETYREKMGKAARAEA-ERWGWE 487
                 445555678888888888888888888776654..33468999999********98866244444234568899****************9998776...568999**********99998864....678***964479**************************************************************9876.6778***************99.665544 PP

>> TIGR03449  mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   5.1e-28   1.5e-25     165     405 ..     279     503 ..     275     504 .. 0.85

  Alignments for each domain:
  == domain 1    score: 87.8 bits;  conditional E-value: 5.1e-28
   TIGR03449 165 adrlivntdeeaedlvelydadpdrvdvvaPGvdlelfrPgdraaerar..lGlpldekvvafvGriqplkaPdvllravaellerdPeselrvlvvGGpsGsglaepealvelaeelGiakrvrflpPrpkeelvevyraadvvavPsysesfGlvaleaqasGtPvvaarvGGlpvavadGetGllvdGhdpaayadaleklldddelrarlgaaavehaakfsWeataealles.yreala 405
                 ad+ +v +++ +++l+   d    rvdv   G+d e+f P  +++  ++     ++d+ ++++vGr+   k     ++ v ++le+ P+ +++  vvG   G+  +e+e++ e ++         fl  r+ +el + + +ad  ++Ps se++G+v le+ asG Pvvaa+ GG+p  +++ +  +lv+  d   y + l++l +d++ r+++g+aa + a+ ++Wea+++ l ++ y++a++
  MMETSP1061-20121228|9182_1 279 ADLTLVTSPQVQQELI---DNGIPRVDVWRKGIDTERFDPKYKNNRMRKvmSDNNPDDFLMVYVGRLGAEK----RIKDVRDILEKMPNARFA--VVG--KGPQKEELEKYFEGTK-------TVFLGQRSGDELSQAFASADAFIMPSDSETLGFVVLESMASGVPVVAANAGGIPSIITNEKDSFLVETGDIDGYVKRLKDL-EDETYREKMGKAARAEAERWGWEAATSVLRNVqYEKAMV 503
                 6666666666666666...456789****************988877773234557889*******96655....699**********97665..565..4677778888877544.......3589999************************************************************************97.778899********************9998754888875 PP

>> TIGR03088  stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.6   0.0   4.2e-26   1.2e-23     162     363 ..     301     490 ..     289     501 .. 0.84

  Alignments for each domain:
  == domain 1    score: 81.6 bits;  conditional E-value: 4.2e-26
   TIGR03088 162 vkqiynGvdterfhPsrgdrsellakdfaadeevvvgtvgrleavkdqvtLvrafillvqqkkekeerlrLvivGdGaarealealveaaGleklvwlaGer..tdiaellqalDvfvLpslaeGisntvLeamasglPviatavGGnaeLveegvtGklvpssdaealakalekYvsdkklikahGkaarerieqkfsleamv 363
                 v   + G+dterf P+  +    +  + +++++++++ vgrl a k        +  ++    ek  + r+++vG+G+++e+le+  e++  +    + G+r  +++++ ++++D f++ps +e +   vLe+masg+Pv+a++ GG + ++++++   lv+++d +  +k l+  ++d++ +++ Gkaar+ +e ++++ea +
  MMETSP1061-20121228|9182_1 301 VDVWRKGIDTERFDPKYKNNRMRKVMSDNNPDDFLMVYVGRLGAEKRIKD----VRDIL----EKMPNARFAVVGKGPQKEELEKYFEGT--K--TVFLGQRsgDELSQAFASADAFIMPSDSETLGFVVLESMASGVPVVAANAGGIPSIITNEKDSFLVETGDIDGYVKRLKD-LEDETYREKMGKAARAEAE-RWGWEAAT 490
                 555678**********8776666667888999**********98776433....33333....444677*****************9865..3..346676633589*****************************************************************987.688999*********9987.56666655 PP

>> TIGR04063  stp3: PEP-CTERM/exosortase A-associated glycosyltransferase, Daro_2409 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.7   0.0   1.1e-24   3.4e-22      14     390 ..     139     495 ..     132     502 .. 0.87

  Alignments for each domain:
  == domain 1    score: 76.7 bits;  conditional E-value: 1.1e-24
   TIGR04063  14 sGytfrtrailkeqralGwetvhltgakhaaaeaeeeevdgltfyrtpaaegarlplleelae.vkalarrleevvrevrPdilhahsPaLnalaalrvarrlgiPvvyeirafWedaavdhgttregslryrltraletkvlrradavtviCeGLredlvargiaaekitvipnavdldkfkeaakadealaeelglegakvlGfiGsfyayeGldllvealpallerepdvrlLLvGgGpqeealraqaaelgladrvvftGrvpheeveryydlidvlvyprksmrltelvtPLkPLeamaqgrlvvasdvGGhreLiedgetGvLfkagdpealaealaklleereeweelraaarkfveeernWaasvaryqe 390
                 sGy+ r + +lk   ++G ++  lt   ++ +++  +e+ g+  + t   +    pl+++++  ++  + + + ++ +++Pd++h  sP +  laa+  ar + iP+v          a++      g    rl+ +l   +  rad   v    ++++l+  gi+  ++ v + ++d ++f+ + k++ ++++   +++++   f+  +    G ++ ++ +  +le+ p++r  +vG Gpq+e+l +  +      + vf G+ + +e ++ ++  d ++ p  s  l  +v     Le+ma g  vva++ GG   +i++ +  +L ++gd ++ +++l++l +e+  +e++ +aar+  +e+  W+a+++  ++
  MMETSP1061-20121228|9182_1 139 SGYANRFNEMLKFLSKAGDNVEILTVDSKTPKNQLPKEAFGYPVHHTLGFT---FPLYNQISLtLDLPEMKGSGIMDRLKPDLIHVTSPGFVLLAAIFYARTMCIPLVMSYHTHLPSYAINYLGFIPGIE--RLAWSLLRFAHTRADLTLVTSPQVQQELIDNGIP--RVDVWRKGIDTERFDPKYKNN-RMRK--VMSDNNPDDFLMVYVGRLGAEKRIKDVRDILEKMPNARFAVVGKGPQKEELEKYFEG----TKTVFLGQRSGDELSQAFASADAFIMPSDSETLGFVV-----LESMASGVPVVAANAGGIPSIITNEKDSFLVETGDIDGYVKRLKDLEDETY-REKMGKAARAE-AERWGWEAATSVLRN 495
                 9**************************9999999999999*****999887...69999987615666778899**********************************************9987777654..79999****************************8..799***********9976655.4444..4555555667777777789********************************988764....578999*************************999887.....9*******************************************9877655.47777777764.344567776666555 PP

>> TIGR02149  glgA_Coryne: glycogen synthase, Corynebacterium family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   1.4e-21   4.1e-19     139     379 ..     273     489 ..     197     501 .. 0.76

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 1.4e-21
   TIGR02149 139 ktaveaadrviavsgamredilkvypdldeekvevvynGidlkeykkaa.ddegtkvldrlgidrsrplvlfvGritrqkGvvhllkavkllskdvqvvlcagapdtPevaeevkqavakldreregvvwieemlekeelvellsaaevfvcPsvyePlGivnleamacetpvvasavGGipevvvdgetGvlveiddddadkfeadlakaidklladpelakklGeaGrkraeeefsweai 379
                 + a   ad  +  s  ++++++         +v+v + Gid++ + +   +++  kv++  + d    l+++vGr+   k +  + + +++++++   v+  g p     +ee+++ ++  +      v++ ++ + +el +  ++a++f+ Ps  e lG v le+ma ++pvva+++GGip ++++++  +lve++d   d+++++l +     l+d    +k+G+a r+ a e ++wea 
  MMETSP1061-20121228|9182_1 273 RFAHTRADLTLVTSPQVQQELIDNG----IPRVDVWRKGIDTERFDPKYkNNRMRKVMSDNNPDDF--LMVYVGRLGAEKRIKDVRDILEKMPNARFAVVGKG-PQ----KEELEKYFEGTKT-----VFLGQR-SGDELSQAFASADAFIMPSDSETLGFVVLESMASGVPVVAANAGGIPSIITNEKDSFLVETGD--IDGYVKRLKD-----LEDETYREKMGKAARAEA-ERWGWEAA 489
                 5555566666666655555555433....45899************96645566677777766665..99**********99999888888887665555444.33....5788888877665.....455544.5689*******************************************************9987..8899997754.....799999*******99987.67899875 PP

>> TIGR04157  glyco_rSAM_CFB: glycosyltransferase, GG-Bacteroidales peptide system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   7.2e-20   2.1e-17     195     354 ..     301     455 ..     277     483 .. 0.83

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 7.2e-20
   TIGR04157 195 ivviynglkdeaillseeerkklrkkys.lkeeekiilfvGRLdeiKgvkalieaFkkvlkkspncrLvivGdgdyseylkeakkiwskitftGkldkekLyelYqiadvGvlpSlhEqcsyvaiEmlmhglPligttstGlkemiedglsglkiplkekk 354
                 + v  +g+ + +++  +++++++rk  s  ++++ ++++vGRL   K++k      + +l+k+pn+r+ +vG g  +e l++  +   k +f G+ +  +L++ +  ad  ++pS  E  ++v++E +  g+P++++++ G+  +i+++   + ++  + +
  MMETSP1061-20121228|9182_1 301 VDVWRKGIDT-ERFDPKYKNNRMRKVMSdNNPDDFLMVYVGRLGAEKRIKD----VRDILEKMPNARFAVVGKGPQKEELEKYFE-GTKTVFLGQRSGDELSQAFASADAFIMPSDSETLGFVVLESMASGVPVVAANAGGIPSIITNEKDSFLVETGDID 455
                 5556677765.455777888888887762568999********99998766....599**********************99885.56788*******************************************************999887766666555 PP

>> TIGR04047  MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.0   8.1e-17   2.4e-14     135     365 ..     275     491 ..     269     499 .. 0.83

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 8.1e-17
   TIGR04047 135 aiveadavlcvsaawaeelraeygveaavvpnGvdlerfsaaaeeadaalrrrlglelgpvvla..vGGiEpRKntidlleAfallrkerPdaqLviaGGatLlDydaYreefearaaeleleigavvilGavddaelpaLvrlAdalafpslkEGfGLvvlEalAsGvPvvaselaPfteyl.deeeavvadpsdpesladalaaaleeaarealaaagkelaarytWdasAr 365
                 a ++ad +l+ s ++++el ++   +  v   G+d+erf  + ++++  +r+ + ++  + +l   vG    R ++ + ++ ++ + ++ P+a+  + G          +ee+e+  +    +    v lG    +el   +++Ada+ +ps  E  G vvlE++AsGvPvva +   +   + +e+++ ++++ d +   + l++  +e++re++ +a+++ a+r++W+a+ +
  MMETSP1061-20121228|9182_1 275 AHTRADLTLVTSPQVQQELIDNGIPRVDVWRKGIDTERFDPKYKNNR--MRKVMSDNNPDDFLMvyVG----RLGAEKRIKDVRDILEKMPNARFAVVGK------GPQKEELEKYFEGT--K---TVFLGQRSGDELSQAFASADAFIMPSDSETLGFVVLESMASGVPVVAANAGGIPSIItNEKDSFLVETGDIDGYVKRLKDLEDETYREKMGKAARAEAERWGWEAATS 491
                 56789999999999999999998888899999999999999888777..7888888777655441155....4444445677788999999999987773......34566666655433..3...3789**********************************************999999867889999**************************************99764 PP

>> TIGR02095  glgA: glycogen/starch synthases, ADP-glucose type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.21        61       6      40 ..     128     162 ..     125     171 .. 0.92
   2 !   42.0   0.0   3.4e-14     1e-11     289     443 ..     328     481 ..     307     501 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.21
   TIGR02095   6 vaaEvaPlvKtGGLaDvvgaLpkalakeghevevl 40 
                 + +E  P+  ++G a+    + k l+k g +ve+l
  MMETSP1061-20121228|9182_1 128 LMVEPTPFTHVSGYANRFNEMLKFLSKAGDNVEIL 162
                 568999**************************998 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 3.4e-14
   TIGR02095 289 evdeekpllavisRLteqKGvdlllealeellekkvqlvvlGtGdpeleealrelaekypekvrvkikydeelahriyAgaDlilvpSrfEPcGLtqliamrYGtvPivrktGGLaDtvedvdeeae...esatGfl..feesdaeallaalkralelyr 443
                 + +++  l+++++RL  +K +  + ++le++   +++++v+G+G ++   +l++  e ++  v +     +el+ + +A+aD++++pS  E  G + l +m  G++ ++ + GG+  ++++ ++++    +   G++  +++ ++e++++++ +a ++ +
  MMETSP1061-20121228|9182_1 328 DNNPDDFLMVYVGRLGAEKRIKDVRDILEKMP--NARFAVVGKGPQKE--ELEKYFEGTKT-VFLGQRSGDELS-QAFASADAFIMPSDSETLGFVVLESMASGVPVVAANAGGIPSIITNEKDSFLvetGDIDGYVkrLKDLEDETYREKMGKAARAEA 481
                 5678899***********************98..899*******5443..35554444443.333344455666.578*******************************************877776655445555433666677777777777766655 PP

>> TIGR04005  wcaL: colanic acid biosynthesis glycosyltransferase WcaL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   3.8e-13   1.1e-10     173     368 ..     277     465 ..     271     485 .. 0.80

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 3.8e-13
   TIGR04005 173 rrgdlmlpisdlwagrlkamgcpkekiavsrmgvdmerft.......krpvkapgtple..iisvarltekkglhvaieacrqlkargvafryrilgigpwerrlrtlieqyqledvvempgfkpshevkamlddadvfllpsvtgadgdmegipvalmeamavgipvvstvhsgipelveaeksgwlvpendaealadrlaafs 368
                  r dl l  s    + l + g p+  + v r g+d erf         r v +  +p +  ++ v rl   k     i+ +r + ++  + r+ ++g gp +  l+   e         + g +   e+ + +  ad f++ps      d e +   ++e+ma g+pvv++   gip ++  ek  +lv   d++   +rl+++ 
  MMETSP1061-20121228|9182_1 277 TRADLTLVTSPQVQQELIDNGIPR--VDVWRKGIDTERFDpkyknnrMRKVMSDNNPDDflMVYVGRLGAEK----RIKDVRDILEKMPNARFAVVGKGPQKEELEKYFEG----TKTVFLGQRSGDELSQAFASADAFIMPS------DSETLGFVVLESMASGVPVVAANAGGIPSIITNEKDSFLVETGDIDGYVKRLKDLE 465
                 588999999999999999999996..7899********9633322224667777788662256667776555....68899*******************99887655554....44556699*******************8......778888999**************************************999998754 PP

>> TIGR02472  sucr_P_syn_N: sucrose-phosphate synthase, putative, glycosyltransferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       2.8   8.3e+02     210     233 ..     300     323 ..     296     331 .. 0.70
   2 !   26.9   0.0   1.5e-09   4.4e-07     341     412 ..     402     471 ..     395     497 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 2.8
   TIGR02472 210 raevipPGvdlskfypveeseeds 233
                 r++v   G+d+++f p  +++   
  MMETSP1061-20121228|9182_1 300 RVDVWRKGIDTERFDPKYKNNRMR 323
                 566777888888888866655544 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 1.5e-09
   TIGR02472 341 kGifvnpaltePfGltlleaaacGlPivatedGGPrdiiakcknGllvdvldleaiksalekalsdeeqwkl 412
                    f+ p+  e +G+ +le+ a+G+P+va++ GG   ii++ k+ +lv++ d++   + l++   ++   ++
  MMETSP1061-20121228|9182_1 402 ADAFIMPSDSETLGFVVLESMASGVPVVAANAGGIPSIITNEKDSFLVETGDIDGYVKRLKDLEDETY--RE 471
                 567999************************************************99999998654443..33 PP

>> TIGR02918  TIGR02918: accessory Sec system glycosylation protein GtfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   1.9e-09   5.4e-07     318     442 ..     332     450 ..     311     487 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 1.9e-09
   TIGR02918 318 kpfslitasrlakekhvdwlvkavvkakkslPeltfdiyGeGgekeklkklieenkaedyiklkGhkdleevykdyelylsastseGfGltlleavGsGlgliGfdvnyGnqtfikdeknGyliP 442
                   f ++ + rl  ek +    k v +  +++P+ +f + G+G +ke+l+k  e  k+  ++  +   +l++ +   ++++  s se +G+ +le++ sG++++  +   G ++ i +ek+ +l+ 
  MMETSP1061-20121228|9182_1 332 DDFLMVYVGRLGAEKRI----KDVRDILEKMPNARFAVVGKGPQKEELEKYFEGTKTV-FLGQRSGDELSQAFASADAFIMPSDSETLGFVVLESMASGVPVVAANA-GGIPSIITNEKDSFLVE 450
                 56778888899999986....667777899**********************998875.666777789***********************************9885.59999999999999986 PP

>> TIGR03087  stp1: sugar transferase, PEP-CTERM/EpsH1 system associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   6.3e-09   1.9e-06     190     390 ..     293     493 ..     265     499 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 6.3e-09
   TIGR03087 190 lapeaakkvtalenGvDadfFsPdreyp......nPyaeekkvlvFtGamdYlpnidavvwFakevlPavrakrpeveflivGakPsda.vraLaelpgvvvtGs.vaD.vRPylahaavvvaPlriaRGvqnkvLEAmAmakpvvaspe.aaegieaeaeaellva.aeeeefvaavlellaegeereelgqaaRervlqeyaWernlarl 390
                 l  +   +v++ + G+D++ F+P+ +++      +  ++++  +v++G++  +  i+ v          + +k+p+++f++vG+ P ++  ++  e    v  G+   D +    a+a++ + P   +  +   vLE mA + pvva+    + +i ++++  +lv   + +++v++ l+ l++++ re++g+aaR    +++ We+  + l
  MMETSP1061-20121228|9182_1 293 LIDNGIPRVDVWRKGIDTERFDPKYKNNrmrkvmSDNNPDDFLMVYVGRLGAEKRIKDVR--------DILEKMPNARFAVVGKGPQKEeLEKYFEGTKTVFLGQrSGDeLSQAFASADAFIMPSD-SETLGFVVLESMASGVPVVAANAgGIPSIITNEKDSFLVEtGDIDGYVKR-LKDLEDETYREKMGKAARAEA-ERWGWEAATSVL 493
                 455566789999***********8654411111123344556788888887777776654........467899************86526665555555555541444388899*********76.5678889************9865267888888888888873566667765.677899999*********985.689999987766 PP

>> TIGR02470  sucr_synth: sucrose synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   5.6e-09   1.6e-06     645     706 ..     403     464 ..     386     493 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 5.6e-09
   TIGR02470 645 GifvqpalyeafGltvveamtsglPtfatkfGGpleiiedgvsGfhidPteleeaaeklvef 706
                  +f+ p+  e++G  v+e+m+sg+P +a++ GG   ii+++++ f ++  + +   ++l ++
  MMETSP1061-20121228|9182_1 403 DAFIMPSDSETLGFVVLESMASGVPVVAANAGGIPSIITNEKDSFLVETGDIDGYVKRLKDL 464
                 589********************************************999888877777665 PP

>> TIGR02468  sucrsPsyn_pln: sucrose phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00012     0.036     573     628 ..     403     458 ..     396     487 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00012
   TIGR02468 573 GvfinpaliepfGltlieaaayGlPivatknGgPvdikrvldnGllvdPhdqeaia 628
                  +fi p+  e +G+ ++e+ a G+P+va+  Gg   i    ++ +lv+  d +   
  MMETSP1061-20121228|9182_1 403 DAFIMPSDSETLGFVVLESMASGVPVVAANAGGIPSIITNEKDSFLVETGDIDGYV 458
                 579******************************98998888888998887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 2215.82
//
Query:       MMETSP1061-20121228|9184_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.17
# Mc/sec: 551.25
//
Query:       MMETSP1061-20121228|9183_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|9186_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 439.96
//
Query:       MMETSP1061-20121228|9188_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.38
# Mc/sec: 2063.20
//
Query:       MMETSP1061-20121228|9185_1  [L=1336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       648  (0.157972); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        71  (0.0173086); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.08u 0.17s 00:00:01.25 Elapsed: 00:00:00.82
# Mc/sec: 2150.46
//
Query:       MMETSP1061-20121228|9187_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.46
# Mc/sec: 1598.22
//
Query:       MMETSP1061-20121228|9190_1  [L=1001]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-31  102.0  12.3    6.6e-08   30.1   0.0   13.0 12  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0     0.013        52       6      28 ..     139     161 ..     136     162 .. 0.90
   2 !    3.0   0.0    0.0068        28       3      23 ..     372     392 ..     370     397 .. 0.90
   3 !    7.4   0.0   0.00028       1.2       1      17 [.     407     423 ..     407     431 .. 0.84
   4 !    5.6   0.0     0.001       4.3       3      26 ..     449     472 ..     447     478 .. 0.83
   5 !   18.9   0.0   6.1e-08   0.00025       2      28 ..     514     540 ..     513     540 .. 0.95
   6 !   30.1   0.0   1.6e-11   6.6e-08       2      35 .]     600     633 ..     599     633 .. 0.97
   7 !   11.3   0.0   1.6e-05     0.066       2      24 ..     635     657 ..     634     662 .. 0.91
   8 !    3.6   0.0    0.0045        19      14      35 .]     699     720 ..     698     720 .. 0.93
   9 ?    0.4   0.0     0.047   1.9e+02      15      33 ..     737     755 ..     731     756 .. 0.90
  10 !    3.5   0.0    0.0047        19       4      27 ..     763     786 ..     760     787 .. 0.91
  11 !    3.6   0.0    0.0046        19       3      25 ..     793     815 ..     791     816 .. 0.91
  12 !    4.1   0.0    0.0031        13       2      34 ..     830     866 ..     829     867 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.013
   TIGR00756   6 lisglckagrveeAlelfdeMke 28 
                 +i+ l ++ ++++A+ +   M+e
  MMETSP1061-20121228|9190_1 139 VIDQLRQNDNLDDAKMIISGMIE 161
                 799999*************9987 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0068
   TIGR00756   3 yntlisglckagrveeAlelf 23 
                 +n +++ ++  g++e A+++ 
  MMETSP1061-20121228|9190_1 372 FNRVLNIYSSTGKMEMAHRVI 392
                 7999*************9986 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.00028
   TIGR00756   1 vtyntlisglckagrve 17 
                 vty++l++g++k ++ e
  MMETSP1061-20121228|9190_1 407 VTYSILVKGYGKLCDAE 423
                 7***********99977 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.001
   TIGR00756   3 yntlisglckagrveeAlelfdeM 26 
                 +n+l++++ + +++++A  ++  M
  MMETSP1061-20121228|9190_1 449 FNSLMDAYINCRQLHKAQTILTAM 472
                 8***************96666555 PP

  == domain 5    score: 18.9 bits;  conditional E-value: 6.1e-08
   TIGR00756   2 tyntlisglckagrveeAlelfdeMke 28 
                 +yn+l++g++++g + eAl+l +eM++
  MMETSP1061-20121228|9190_1 514 SYNILLKGYAREGLLPEALKLAEEMRS 540
                 8************************86 PP

  == domain 6    score: 30.1 bits;  conditional E-value: 1.6e-11
   TIGR00756   2 tyntlisglckagrveeAlelfdeMkergivPda 35 
                 +y+tl++g++k g+++ A++l++ M++r+++P++
  MMETSP1061-20121228|9190_1 600 AYTTLMDGYAKDGKLKQAISLLKTMRDRKVEPNE 633
                 6*******************************96 PP

  == domain 7    score: 11.3 bits;  conditional E-value: 1.6e-05
   TIGR00756   2 tyntlisglckagrveeAlelfd 24 
                  y++li +l+++g+ + A++++d
  MMETSP1061-20121228|9190_1 635 HYSCLIGSLAREGKADQAEKMLD 657
                 59*******************98 PP

  == domain 8    score: 3.6 bits;  conditional E-value: 0.0045
   TIGR00756  14 grveeAlelfdeMkergivPda 35 
                 ++v++Al +++ M+++ i Pda
  MMETSP1061-20121228|9190_1 699 KNVNKALLILRAMIDDRIMPDA 720
                 799***************9995 PP

  == domain 9    score: 0.4 bits;  conditional E-value: 0.047
   TIGR00756  15 rveeAlelfdeMkergivP 33 
                 r++eA+ l ++++ +gi P
  MMETSP1061-20121228|9190_1 737 RMKEAVTLVEKLETQGIIP 755
                 789*************988 PP

  == domain 10    score: 3.5 bits;  conditional E-value: 0.0047
   TIGR00756   4 ntlisglckagrveeAlelfdeMk 27 
                 ++l++ ++   ++e A+ +f+++k
  MMETSP1061-20121228|9190_1 763 TALVRVCGSCESLEGAIACFRRIK 786
                 79*******************987 PP

  == domain 11    score: 3.6 bits;  conditional E-value: 0.0046
   TIGR00756   3 yntlisglckagrveeAlelfde 25 
                  n+li++ +++g+ + A++ f++
  MMETSP1061-20121228|9190_1 793 INALIDAAVRSGNDKVAVQTFNR 815
                 69*************99999985 PP

  == domain 12    score: 4.1 bits;  conditional E-value: 0.0031
   TIGR00756   2 tyntlisglckagrve...eAlelfdeMker.givPd 34 
                 +++t+i ++ k g ++    A++l++eM+ +  i Pd
  MMETSP1061-20121228|9190_1 830 SFSTMIGAHMKKGTFDgsrAARKLYQEMRFQrRILPD 866
                 6677777777777665222688999999766466665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1001 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.55
# Mc/sec: 2402.20
//
Query:       MMETSP1061-20121228|9192_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-48  157.8  59.9    1.3e-07   29.0   1.6   12.7 13  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   1.4    0.0011       4.5      18      25 ..       2       9 ..       2      10 .. 0.93
   2 ?   -1.6   0.0      0.12   5.1e+02      16      21 ..      25      30 ..      21      33 .. 0.85
   3 !   18.5   0.1   6.5e-08   0.00027       2      25 ..      37      59 ..      36      60 .. 0.91
   4 !   22.3   0.4   4.2e-09   1.7e-05       1      26 []      61      85 ..      61      85 .. 0.96
   5 !   23.1   0.3   2.3e-09   9.3e-06       1      26 []      86     110 ..      86     110 .. 0.96
   6 !   18.0   0.3   9.3e-08   0.00038       1      25 [.     111     134 ..     111     135 .. 0.96
   7 !   11.3   0.1   1.2e-05     0.049       1      25 [.     136     159 ..     136     160 .. 0.85
   8 !   15.7   0.3   4.8e-07     0.002       1      25 [.     161     184 ..     161     185 .. 0.89
   9 !    6.8   0.1    0.0003       1.2       1      21 [.     186     205 ..     186     205 .. 0.97
  10 !   29.0   1.6   3.3e-11   1.3e-07       1      26 []     211     235 ..     211     235 .. 0.97
  11 !   12.8   0.0   3.9e-06     0.016       2      24 ..     237     258 ..     236     258 .. 0.84
  12 !   18.4   0.0   6.9e-08   0.00028       1      25 [.     261     284 ..     261     285 .. 0.97
  13 !   12.4   0.0   5.1e-06     0.021      12      24 ..     296     308 .]     286     308 .] 0.91

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0011
   TIGR02167 18 TsnVTnMs 25
                Ts+VT+M+
  MMETSP1061-20121228|9192_1  2 TSSVTDMN 9 
                9******6 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.12
   TIGR02167 16 fdTsnV 21
                +d+s V
  MMETSP1061-20121228|9192_1 25 WDVSRV 30
                ****99 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 6.5e-08
   TIGR02167  2 FsgCssLtsLDlSnfdTsnVTnMs 25
                F+   s+++ +l+ +dT++VT+M+
  MMETSP1061-20121228|9192_1 37 FYKAYSFNQ-PLDEWDTASVTDMN 59
                899999999.*************6 PP

  == domain 4    score: 22.3 bits;  conditional E-value: 4.2e-09
   TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMss 26
                MF+  +++++ +l  ++Ts+VT+M+s
  MMETSP1061-20121228|9192_1 61 MFRKAWAFNQ-PLNEWNTSSVTDMYS 85
                9*********.*************85 PP

  == domain 5    score: 23.1 bits;  conditional E-value: 2.3e-09
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMss 26 
                 MFs   ++++ D+  +d+s+VT+M++
  MMETSP1061-20121228|9192_1  86 MFSRAYAFNQ-DVGDWDVSSVTDMTG 110
                 9*********.*************85 PP

  == domain 6    score: 18.0 bits;  conditional E-value: 9.3e-08
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF++C  ++  ++  +dTs+VT M+
  MMETSP1061-20121228|9192_1 111 MFFCCYDFNK-PIGLWDTSSVTGMR 134
                 **********.***********997 PP

  == domain 7    score: 11.3 bits;  conditional E-value: 1.2e-05
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF+   s+++  + ++dTs+ T ++
  MMETSP1061-20121228|9192_1 136 MFYRAYSFNQ-SIGSWDTSSATELR 159
                 8888888888.899********875 PP

  == domain 8    score: 15.7 bits;  conditional E-value: 4.8e-07
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF+  ss+++ +l  +dTs+VT M+
  MMETSP1061-20121228|9192_1 161 MFARASSFNQ-PLLEWDTSSVTSMR 184
                 8888999999.9999*********6 PP

  == domain 9    score: 6.8 bits;  conditional E-value: 0.0003
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnV 21 
                 MFs  s +++ ++  +++s+V
  MMETSP1061-20121228|9192_1 186 MFSRASVFNQ-PIGDWNVSSV 205
                 9*********.*********9 PP

  == domain 10    score: 29.0 bits;  conditional E-value: 3.3e-11
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMss 26 
                 MF++ +++++ ++ ++dTs+VT+M++
  MMETSP1061-20121228|9192_1 211 MFFNATQFNQ-PVGSWDTSSVTDMRW 235
                 **********.*************85 PP

  == domain 11    score: 12.8 bits;  conditional E-value: 3.9e-06
   TIGR02167   2 FsgCssLtsLDlSnfdTsnVTnM 24 
                 F+   s+++ ++S++dTs+   M
  MMETSP1061-20121228|9192_1 237 FYRTYSFNQ-PISGWDTSSARSM 258
                 666678888.9********9988 PP

  == domain 12    score: 18.4 bits;  conditional E-value: 6.9e-08
   TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                 MF++ +++++ +++ +++s+ T+M 
  MMETSP1061-20121228|9192_1 261 MFQYATAFNQ-PIDDWNVSSLTDMQ 284
                 **********.*************7 PP

  == domain 13    score: 12.4 bits;  conditional E-value: 5.1e-06
   TIGR02167  12 DlSnfdTsnVTnM 24 
                 +l+++d+s+V++M
  MMETSP1061-20121228|9192_1 296 PLDSWDVSKVNDM 308
                 699********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 1355.09
//
Query:       MMETSP1061-20121228|9189_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   14.3   0.0      0.002   13.9   0.0    1.1  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial


Domain annotation for each model (and alignments):
>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     5e-07     0.002     665     720 ..     275     329 ..     249     349 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5e-07
   TIGR03900 665 PvFafsyqiiDdrklgNGDGlvqkGEtvslrltvkNaGkGtakdtrvqlrNlsgdk 720
                   F +++ + Dd  l NGDG + +GE + + l ++ +   ++kd + +l+N + d 
  MMETSP1061-20121228|9189_1 275 TFFDYAHLVWDDVVLHNGDGPLWNGEDIFMSLVANHV-YEESKDGTSHLNNYAMDW 329
                 469***************************9966555.589999999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.43
# Mc/sec: 1101.96
//
Query:       MMETSP1061-20121228|9191_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.45
# Mc/sec: 1393.22
//
Query:       MMETSP1061-20121228|9193_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1124.04
//
Query:       MMETSP1061-20121228|9194_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.4   1.6      0.032   11.3   1.1    1.0  1  TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
        1.2    7.0   8.0        1.9    6.3   5.5    1.3  1  TIGR03750 conj_TIGR03750: conjugative transfer region protein, TIGR03750 family


Domain annotation for each model (and alignments):
>> TIGR03025  EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.1   1.6e-05     0.032      30     115 ..      25     112 ..       7     121 .. 0.54

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.6e-05
   TIGR03025  30 slllllllllllilfala...glyrskrrrslleelarvllall...lllllllalafllkslslsrlvlllalllalllllllrlllrrll 115
                   ++  +l+ ++  f++    g       ++ +ee+  v+l+++   ++++++la+af++  +sl+  +++la+ l +++++++  ++ ++l
  MMETSP1061-20121228|9194_1  25 DKVTFGTLFCFVPSFSARdapG----FEASAGREEVGIVVLGVFafvFVFAFALAFAFVFAPFSLAPIAVVLAVRLVVFVVVFVSGFCVWFL 112
                 4444455555555555553323....333334444444444443000333333444444445777777777777777777777777777766 PP

>> TIGR03750  conj_TIGR03750: conjugative transfer region protein, TIGR03750 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   5.5   0.00093       1.9      22      66 ..      55     101 ..      49     108 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00093
   TIGR03750  22 Elvvaav..vglvlglvlglllalllgswaliptgallgvilvvlig 66 
                 E++++++  +++v+++ ++l +a+++++ +l+p++++l+v lvv+++
  MMETSP1061-20121228|9194_1  55 EVGIVVLgvFAFVFVFAFALAFAFVFAPFSLAPIAVVLAVRLVVFVV 101
                 6666664115556666666777778889***********99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 734.55
//
Query:       MMETSP1061-20121228|9196_1  [L=654]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (654 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.37
# Mc/sec: 2333.00
//
Query:       MMETSP1061-20121228|9195_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-55  185.9   0.0    2.3e-55  185.7   0.0    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.2e-46  157.1   0.1    1.5e-46  156.9   0.1    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.4e-44  148.7   0.0    5.4e-44  148.4   0.0    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    9.8e-41  137.5   0.0    1.8e-40  136.6   0.0    1.4  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    4.3e-39  132.3   0.0    7.3e-39  131.5   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
    2.6e-35  119.7   0.0    3.1e-35  119.5   0.0    1.0  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
      1e-28   98.2   0.1    1.3e-28   97.9   0.0    1.0  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.3e-28   98.0   0.2    5.9e-28   95.9   0.2    1.8  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    1.9e-24   83.9   0.0    6.5e-24   82.1   0.0    1.6  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    4.9e-22   76.1   0.0      1e-11   42.3   0.0    2.0  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    4.7e-18   63.2   0.1    8.7e-18   62.3   0.0    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    8.6e-17   59.2   0.0    1.1e-16   58.9   0.0    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
      5e-05   20.8   0.0    6.5e-05   20.4   0.0    1.1  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
     0.0001   19.8   0.1    0.00028   18.4   0.1    1.7  1  TIGR01777 yfcH: TIGR01777 family protein
      0.005   13.6   0.0     0.0086   12.8   0.0    1.4  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0079   14.0   0.2      0.013   13.3   0.1    1.3  1  TIGR01915 npdG: NADPH-dependent F420 reductase
  ------ inclusion threshold ------
      0.028   11.4   0.0      0.045   10.7   0.0    1.3  1  TIGR00507 aroE: shikimate 5-dehydrogenase
      0.047   10.6   0.0      0.072   10.0   0.0    1.2  1  TIGR00287 cas1: CRISPR-associated endonuclease Cas1


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.7   0.0     1e-57   2.3e-55       1     238 [.      59     304 ..      59     305 .. 0.91

  Alignments for each domain:
  == domain 1    score: 185.7 bits;  conditional E-value: 1e-57
   TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelveevee...elgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikk...rsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmtekl.s.ekvkkkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGGl 238
                 a+vtG+++giGka++++lak+g++++i++r++e+ ++ ++e  +++g ++++v +dvs +e +++l++e+e+   + g++dilvnn G+   k  ++ ++ed ++v k+n +++f +t +    + ++   +s ++ini+sv+g++  +  + Yaa+Ka +  lt  la E +  +i+vn+vaP +i+t++ +++ + e   k+++e+ p++r+g+p+eva +vafL+   a+yitGqv++vdGG+
  MMETSP1061-20121228|9195_1  59 AVVTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVTKEWNEAQGFDVTGVCADVSTSEGLNSLYTEIEHwlgDEGRLDILVNNVGMNIRKPSVEYTKEDTQTVWKTNFDSMFDLTMKCYPLLKRNpgeQSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGLDGIRVNCVAPWYINTELAKQVlKdEAYLKSVVERTPMGRVGEPDEVAGLVAFLCLPIAQYITGQVISVDGGF 304
                 79**************************998877777677777779******************999999872225679***************************************99887776642227889********************************************************98652514467999****************************************7 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.9   0.1   6.5e-49   1.5e-46       3     240 ..      59     304 ..      57     306 .. 0.91

  Alignments for each domain:
  == domain 1    score: 156.9 bits;  conditional E-value: 6.5e-49
   TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakvea...elGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegml...ergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavred..vlkkivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGl 240
                 a+vtGg++GiG+a+ ++lak+G++++   + +e+ ++  ++ +e++gfdv+ v advs++e  ++  +++e    ++G++d+lvnn G+   +     tke+ + v +tn++s+f++t + +  ++     +   +ini sv G+      + y+a+ka +  +t  la e    g+ vn +aP yi+te+ k+v +d   lk++v+  P++r+g+p+e+a +vafl+   a y+tG+ +sv+GG 
  MMETSP1061-20121228|9195_1  59 AVVTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVTKEWNEAQGFDVTGVCADVSTSEGLNSLYTEIEHwlgDEGRLDILVNNVGMNIRKPSVEYTKEDTQTVWKTNFDSMFDLTMKCYPLLKrnpGEQSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGLDGIRVNCVAPWYINTELAKQVLKDeaYLKSVVERTPMGRVGEPDEVAGLVAFLCLPIAQYITGQVISVDGGF 304
                 89************************9999999999999999*****************9988877777764333899***********99999999*********************98766544111457789**********************************************************99544227999****************************************96 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.4   0.0   2.4e-46   5.4e-44       7     245 ..      58     304 ..      52     307 .. 0.90

  Alignments for each domain:
  == domain 1    score: 148.4 bits;  conditional E-value: 2.4e-46
   TIGR01832   7 valvtGantGlGqgiavglaeaGadivgvgisels...etqekvealGrkflslkadladeeaakal...vdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqG...rkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflassasdyvnGailavdGGw 245
                 +a+vtG  +G+G++++  la+ G+ i+  ++++ +    t+e  ea+G  ++ + ad++ +e+ ++l   +++ +   g++dilvnn G+  r+ +ve++++d + v ++n++++f l+ +    llk+    +++ +ini s+         + y+a+k a+  lt  la+ew   gi+vn +aP y++t+ ++++  de+  ++++er P gr Gep+++ag + fl    ++y++G++++vdGG+
  MMETSP1061-20121228|9195_1  58 TAVVTGGTKGIGKAVVEELAKKGCRILICSRKQEDltrVTKEWNEAQGFDVTGVCADVSTSEGLNSLyteIEHWLGDEGRLDILVNNVGMNIRKPSVEYTKEDTQTVWKTNFDSMFDLTMKCYP-LLKRNpgeQSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGLDGIRVNCVAPWYINTELAKQVLKDEAYLKSVVERTPMGRVGEPDEVAGLVAFLCLPIAQYITGQVISVDGGF 304
                 79************************99988776511146677899*****************9999333445556778***************************************988755.555432456789********9999999999********************************************************************************************7 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.6   0.0     8e-43   1.8e-40       2     253 ..      57     305 ..      56     307 .. 0.90

  Alignments for each domain:
  == domain 1    score: 136.6 bits;  conditional E-value: 8e-43
   TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakel.eeaggevlalkadvtkeeeiadlieavaaef...gsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkq...gwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgGwt 253
                  +a+vtG + Gig+a+ +ela++G+++++ + ++e++++++ke  e++g++v+ + adv+ +e +++l +++++ +   g+ldiLvnn G+ + +p  e+  e+ +++ + n +s f ++ +  p +k++   +   +ini+sv g       ++Y a+K ++  lt  lA E    gi++n+++P y++t L ++ ++d+a  +           +++++p +r+ +++eva+l++fl+   a+ itGq +s+dgG+t
  MMETSP1061-20121228|9195_1  57 STAVVTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVTKEWnEAQGFDVTGVCADVSTSEGLNSLYTEIEHWLgdeGRLDILVNNVGMNIRKPSVEYTKEDTQTVWKTNFDSMFDLTMKCYPLLKRNpgeQSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGLDGIRVNCVAPWYINTELAKQVLKDEAYLKS----------VVERTPMGRVGEPDEVAGLVAFLCLPIAQYITGQVISVDGGFT 305
                 589******************************98888877775167899************99999888887755222789*********************************************9753326779********************************************************8877777665443..........45789*************************************8 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.5   0.0   3.2e-41   7.3e-39       2     252 ..      58     305 ..      57     307 .. 0.87

  Alignments for each domain:
  == domain 1    score: 131.5 bits;  conditional E-value: 3.2e-41
   TIGR02415   2 valvtGaaqGiGkaiaerLakdGfavavadlneetaketakelke.kgtkavavkldvsdkseveea...veqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkkl...khkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGlv 252
                 +a+vtG+++GiGka++e Lak G  + ++  ++e +++++ke +e +g++   v +dvs+ + ++++   +e+   + G ld+lvnn G++  +p  e t+e+ +++++ n  ++ f +      + k    ++   +in  s+agv+ ++  + y++tk a+  lt   a e   +gi vn+ aP  ++te+ +++ +++a l+         ++ ++  +Gr+ eP++va+lv+fl    ++yitGq+i vdGG+ 
  MMETSP1061-20121228|9195_1  58 TAVVTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVTKEWNEaQGFDVTGVCADVSTSEGLNSLyteIEHWLGDEGRLDILVNNVGMNIRKPSVEYTKEDTQTVWKTNFDSM-FDLTMKCYPLLKRnpgEQSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGLDGIRVNCVAPWYINTELAKQVLKDEAYLK---------SVVERTPMGRVGEPDEVAGLVAFLCLPIAQYITGQVISVDGGFT 305
                 79**************************************9998726889999*******99888762225555666678*******************************8875.555555554444411134589***********************************************************999887765.........45667789**********************************75 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.5   0.0   1.4e-37   3.1e-35       2     238 ..      60     304 ..      59     305 .. 0.89

  Alignments for each domain:
  == domain 1    score: 119.5 bits;  conditional E-value: 1.4e-37
   TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaairaqggnarllkfdvadrvavr...evleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirar...kggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekd...lkealklvpmkrvgkaeevaalaaflmsddaayvtrqvisvnggm 238
                 +vtg ++gig+a+  +la +g  i +  r+++  +  + +  +aqg ++  +  dv+  +      + +e+ + ++g    +v n g++  +     ++ed ++v +tn+d+++++   +  p+++     +   +i + sv+gv   +    y+a+ka +   t  la e     i vnc+ap  i+te+ ++v kd   lk  ++  pm rvg+++eva+l+afl   +a y+t qvisv+gg+
  MMETSP1061-20121228|9195_1  60 VVTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVTKEWNEAQGFDVTGVCADVSTSEGLNslyTEIEHWLGDEGRLDILVNNVGMNIRKPSVEYTKEDTQTVWKTNFDSMFDLTMKC-YPLLKRNpgeQSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGLDGIRVNCVAPWYINTELAKQVLKDeayLKSVVERTPMGRVGEPDEVAGLVAFLCLPIAQYITGQVISVDGGF 304
                 69**********************9988877777777777789*************998766511156899999***************99999999******************99988.58887651226678*******************************************************9888755433389999999***********************************96 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   5.7e-31   1.3e-28       4     249 ..      57     305 ..      55     306 .. 0.87

  Alignments for each domain:
  == domain 1    score: 97.9 bits;  conditional E-value: 5.7e-31
   TIGR03206   4 kvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekgg.kaeavavditdrasvdaavaaaeealg...pvdvlvnnagwdvlkpflktekaewerliainltga..lymh.havlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsgglt 249
                  +a+vtgg+ gig a+   +a++g+++ +   ++e   +v+++ +e+ g +   v +d++  + ++   + +e+ lg     d+lvnn g ++ kp ++  k + + +   n+     l m+ + +lk     ++  ++ni s a+ +     + yaa k  +  ++  la e   +gi vn v p   +t l ++v ++    e  +++     p+gr+g+pd++ag ++fl+   a +itgqv+sv gg+t
  MMETSP1061-20121228|9195_1  57 STAVVTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVTKEWNEAQGfDVTGVCADVSTSEGLNSLYTEIEHWLGdegRLDILVNNVGMNIRKPSVEYTKEDTQTVWKTNFDSMfdLTMKcYPLLKRNPGEQSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGLDGIRVNCVAPWYINTELAKQVLKD----EAYLKSVVERTPMGRVGEPDEVAGLVAFLCLPIAQYITGQVISVDGGFT 305
                 589**************************************9998865527889999***9998888888888887622269**************99999999999999998776114444244566666667789**********9999999*************************************999888755....56677777889************************************98 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.2   2.6e-30   5.9e-28       6     264 ..      59     304 ..      56     305 .. 0.88

  Alignments for each domain:
  == domain 1    score: 95.9 bits;  conditional E-value: 2.6e-30
   TIGR03971   6 alitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredlde.taklvealGrkvlarkadvrk...leelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalier..knGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                 a++tG ++G G+a    la++G  i+              ++  +edl + t +  ea+G  v    adv +   l+ l   +e+ +   Grld++v+n G+    ++ e ++e+ +tv  +n++ ++       P l  +  ++  s+i ++svag+ +++  + yaa+k  +  lt  la e +  girvn + P  ++t++ +       ++k e+++++ ++ +p+  + ep++va++va+l+ + ++yitG+ + vd G 
  MMETSP1061-20121228|9195_1  59 AVVTGGTKGIGKAVVEELAKKGCRILI-------------CSRKQEDLTRvTKEWNEAQGFDVTGVCADVSTsegLNSLYTEIEHWLGDEGRLDILVNNVGMNIRKPSVEYTKEDTQTVWKTNFDSMFDLTMKCYPLLKRNpgEQSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGLDGIRVNCVAPWYINTELAK------QVLKDEAYLKSVVERTPMGRVGEPDEVAGLVAFLCLPIAQYITGQVISVDGGF 304
                 788888888888888888888877753.............45557888762556779999999999999976333777778899999999**************************************98888899776542246689******************************************************9887......57899*********************************************996 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   2.8e-26   6.5e-24     416     671 ..      58     305 ..      53     309 .. 0.90

  Alignments for each domain:
  == domain 1    score: 82.1 bits;  conditional E-value: 2.8e-26
   TIGR02632 416 valvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalay...GGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkq..glggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaGva 671
                  a+vtGg+ GiG++v   l+++G  +++   ++e +  v +e ++  G d    + +dv   e +++ + e+       G +di+vnn G+ + kp+ e ++e+ +   + +    f ++ + + ll++   + +++++ i+s+ +v+  k+ + y+a+kaa + l   la e +  girvn vaP               +  +a+  ++ +   +   +r+ ++r   p+++a  v +l     +  tG++i+vd+G +
  MMETSP1061-20121228|9195_1  58 TAVVTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVTKEWNEAQGFDV-TGVCADVSTSEGLNSLYTEIEHWLgdeGRLDILVNNVGMNIRKPSVEYTKEDTQTVWKTNFDSMFDLTMKCYPLLKRNpgEQSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGLDGIRVNCVAPWY------------INTELAKQVLKDEAYLKSVVERTPMGRVGEPDEVAGLVAFLCLPIAQYITGQVISVDGGFT 305
                 689*********************************************995.6899***9999999888888776511267******************99999999999999999**********99864468899*************************************************43............3455677777777778888999999999999999999999999999999999999999975 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   0.0   6.6e-11   1.5e-08       3     107 ..      58     160 ..      56     176 .. 0.87
   2 !   42.3   0.0   4.4e-14     1e-11     151     263 ..     190     305 ..     181     307 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 6.6e-11
   TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnasafyptpllrgdaee 107
                 +a+vtG++k iG+++ ++l ++G r+++  r+ +e+ +++++e n+++      v ad+s s+ l s   ei +      Gr d+lvnn       p ++  +e+
  MMETSP1061-20121228|9195_1  58 TAVVTGGTKGIGKAVVEELAKKGCRILICSRK-QEDLTRVTKEWNEAQGFDVTGVCADVSTSEGLNSLYTEI-EHWLGDEGRLDILVNNVGMNIRKPSVEYTKED 160
                 69************************998766.678999*********9999999*********99998885.7788999*********9988888877766665 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 4.4e-14
   TIGR02685 151 snlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampeevkeeyrrkv....plgqreasaeqiadvviflvskkakyitGtiikvdGGls 263
                 ++ s++n+        + + + y+ +k a++ lt   a e    +irvn+vap       a    + e y + v    p+g+     +++a  v+fl+ + a+yitG +i vdGG++
  MMETSP1061-20121228|9195_1 190 QSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGLDGIRVNCVAPWYINTELAKQVLKDEAYLKSVvertPMGRV-GEPDEVAGLVAFLCLPIAQYITGQVISVDGGFT 305
                 5678888887777777778899*******************************976666666666677777655333377765.56899**************************85 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   3.8e-20   8.7e-18       7     261 ..      58     310 ..      55     312 .. 0.79

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 3.8e-20
   TIGR03325   7 vvlvtggasglgralvdrfvaegarvavldksaagleelea....ahgdkvvgvegdvrl...lddhkeavarcveafgkldtlipnagiwdystalvdipddr....ideafdevfeinvkgyllavkaalpalvasrgsviftvsnagfypngggalytaakhavvglvkelayela.pyvrvngvapgglstdlrglksldladksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavlnydgglgvrglf 261
                  ++vtgg+ g+g+a+v+    +g r+ +  + ++ l ++ +    a g  v gv  dv +   l++  + +++ +   g+ld+l++n+g+     + v+  ++      +  fd +f++ +k y l  +       +   svi   s ag      g+ y+a+k a+  l  +la e++   +rvn vap  ++t+l       l+d++     l+ +++   p+gr+ + +e +g   f+     +  +tg v+  dgg+   g +
  MMETSP1061-20121228|9195_1  58 TAVVTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVTKewneAQGFDVTGVCADVSTsegLNSLYTEIEHWLGDEGRLDILVNNVGMN-IRKPSVEYTKEDtqtvWKTNFDSMFDLTMKCYPLLKRNP--G--EQSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGlDGIRVNCVAPWYINTELAKQ---VLKDEAY----LKSVVE-RTPMGRVGEPDEVAGLVAFLC-LPIAQYITGQVISVDGGFTRNGYY 310
                 589*****************************999977655111167778*******9864447888899999999*************85.555666655443011146789999999999997755442..2..33458899999*******************************9446*************98543...3445443....444444.46************9866665.5677889**********9988876 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.0   4.7e-19   1.1e-16       3     206 ..      59     255 ..      57     276 .. 0.89

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 4.7e-19
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelq.glektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqsqvre 206
                 ++vtG  +G+G+++ +elak    +g  + + +R +e L +  +e +   ++  v  v +d+++ ++++ l+  +e   + e+    +l+nn G   ++ k  +e +  +  q  +++n  s+  lt +    lk  +      v+n+ s++ +  +ks + Y a+kaa + +   La e   + ++v   ap  ++t++ +qv +
  MMETSP1061-20121228|9195_1  59 AVVTGGTKGIGKAVVEELAK----KGCRILICSRKQEDLTRVTKEWNE-AQGFDVTGVCADVSTSEGLNSLYTEIEHWLGDEGRLD-ILVNNVGM--NIRKPSVEYTK-EDTQTVWKTNFDSMFDLTMKCYPLLKRNPgEQSSSVINIGSVAGVTCMKSGTPYAATKAAMNQLTGNLACEWGlDGIRVNCVAPWYINTELAKQVLK 255
                 79******************....89999999***9999998888875.69************************99999887544.67899996..66677776654.456899***************99999998456678*********************************************************99965 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   2.8e-07   6.5e-05       3     166 ..      56     224 ..      54     241 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 2.8e-07
   TIGR01289   3 kptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkd.sytilkldlas...ldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekd.krliilgsvtanskelagkvpi...kadlgdlsg 166
                 k+t+++tg + g+g a    l++kg   +++  r+ e   +++k+   +++ + t +  d+++   l+s+   +e++   + +ld+lv n  + +       ++ ++ +    tn    f l+      lk+ + ++   +i +gsv++ +   +g  p    ka + +l+g
  MMETSP1061-20121228|9195_1  56 KSTAVVTGGTKGIGKAVVEELAKKG-CRILICSRKQEDLTRVTKEWNEAQGfDVTGVCADVSTsegLNSLYTEIEHWLGDEGRLDILVNNVGMNIRK-PSVEYTKEDTQTVWKTNFDSMFDLTMKCYPLLKRNPGEQsSSVINIGSVAGVTCMKSGT-PYaatKAAMNQLTG 224
                 89***********************.8999999*999999999998776653456677788763347778888888889999*******98876643.345799**************************9988665166788*****999887775.33133666666655 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   1.2e-06   0.00028       2     109 ..      60     196 ..      59     238 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1.2e-06
   TIGR01777   2 litGgtGliGralveelekkghevviltrskekekeekkesakevaee...................aeee......alegvdavinLaGepiad..krwteerkkeil....eSRikttealvelikka.kqkpkvlis 109
                 ++tGgt  iG+a+veel kkg ++ i +r++e+ ++ + ++++e++                     +  e      +  ++d+++n  G +i +   ++t+e  ++++    +S  + t + + l+k++  ++++ +i+
  MMETSP1061-20121228|9195_1  60 VVTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVT-KEWNEAQGFdvtgvcadvstseglnslyT--EiehwlgDEGRLDILVNNVGMNIRKpsVEYTKEDTQTVWktnfDSMFDLTMKCYPLLKRNpGEQSSSVIN 196
                 89****************************99655444.44433333344666666655444444331..0444555556677778888887776556677777777762222355566666666666665334444444 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.8e-05    0.0086       2      41 ..      58      97 ..      57     133 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.8e-05
   TIGR03466  2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnle 41
                +++vtG+t  +G+avv++l+++G+++ +  rk+ d + ++
  MMETSP1061-20121228|9195_1 58 TAVVTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVT 97
                579***********************99999988766554 PP

>> TIGR01915  npdG: NADPH-dependent F420 reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   5.6e-05     0.013       5      46 ..      61     102 ..      58     120 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.6e-05
   TIGR01915   5 vlGGtGdqGkGlalRlAkageeiiiGsRdkekAeeaAkkale 46 
                 v GGt  +Gk ++  lAk+g  i+i sR++e  ++  k+ +e
  MMETSP1061-20121228|9195_1  61 VTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVTKEWNE 102
                 78**************************99987776666554 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0    0.0002     0.045     119     167 ..      59     104 ..      50     122 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0002
   TIGR00507 119 rvliiGAGGaakavaleLlkadkeviiaNRtvekaeelaerlqelgeil 167
                  v+  G  G +kav+ eL+k++++++i+ R +e     +  ++e  e +
  MMETSP1061-20121228|9195_1  59 AVVTGGTKGIGKAVVEELAKKGCRILICSRKQEDL---TRVTKEWNEAQ 104
                 344456789*********************86555...44444444444 PP

>> TIGR00287  cas1: CRISPR-associated endonuclease Cas1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00031     0.072      11      76 ..      34      98 ..      27     110 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00031
   TIGR00287 11 lskkgntlvvekegekkkkipiaevdsililggvsissaairllakkgidivFldedGeylgrlsp 76
                ls+  +  +v   ++  +++p++++  ++ +g   i +a++++lakkg+ i  ++++ e l r++ 
  MMETSP1061-20121228|9195_1 34 LSRVMQYQCVHGATDAGWNLPPKSTA-VVTGGTKGIGKAVVEELAKKGCRILICSRKQEDLTRVTK 98
                66666777888888899******765.66677789********************99887777554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.33u 0.17s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 1259.90
//
Query:       MMETSP1061-20121228|9197_1  [L=1104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-28   96.0 196.9    8.5e-12   41.5  33.1    4.1  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    3.3e-20   69.3 196.5    3.6e-07   26.1  30.1    5.1  4  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3  25.9   6.2e-13   1.3e-09     705     942 ..       2     239 ..       1     245 [. 0.60
   2 !   41.5  33.1   4.1e-15   8.5e-12     240     505 ..     243     508 ..     236     509 .. 0.96
   3 !   28.9  43.8   2.6e-11   5.3e-08     238     509 ..     472     737 ..     470     757 .. 0.54
   4 !    8.8  28.0     3e-05     0.061     232    1021 ..     754    1009 ..     726    1051 .. 0.27

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 6.2e-13
   TIGR02168 705 lekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiae 942
                 l++e  +l +++++ ++e e+l+++ls+  ++l+    ++ qlee+la    e ++l+++ +el+ el++ ++el+ ++++   l+ e+++lk++l  lr++ + l +e++    e+++ + r ++le  ++++ ++++e+++q+e+ + e  + ++ ++e +++ ++lee+l e  ++k+++e+++++l ++l+e+se+l++  k +++  +++  l+++l+++ +r ee+e    +
  MMETSP1061-20121228|9197_1   2 LRQEVADLLSKMKNTQQEVEDLSNELSKCTENLKISIDRESQLEEELATWTGEAKNLQQKSNELSLELTKRTNELEYSQKKESGLTVEVTDLKNDLRILRKRCTGLGDEVNHFTLELEQSKCRERKLEISVKEWMERVQETKAQAETVSFEHMQCSKDLNESRQNTTRLEETLSETVAAKEEAEREIERLTNKLSETSESLEKSCKSLDQSMQRYLDLQNSLSDMTTRAEEAEHSATQ 239
                 4555555666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666654443 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 4.1e-15
   TIGR02168 240 eleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleg 505
                  le ++eel +a++++e+l +e +el+++++e  ++ +e+++  ++lq++lq++++ +++ e+ + +++e+ e+l++++eel ++++++ s+ ++++  +++l++el+++   l+++ ++l++a+   +   +++e l++e e+l+++++  e++++ l++el + + +l+ ++e+++++k++ +   ++l+ ae  l++lq+el e+++ l++ +e+ +r+ee++  l+e+l+ a   +q +  +l + +  l+sl++ ++++e+
  MMETSP1061-20121228|9197_1 243 LLECVREELGSAAQTIETLGKEKEELTSSVKEWTSQTNEANSLCKQLQSRLQTTQNSLANSEEALSEAQEKIENLNTDKEELITSVAKWTSETDDAKSLVKSLRQELDDTVSTLNDTTDKLSQAQGINNLRIDEIEVLTAETENLKNKINHDEHSIDVLRNELHETKHRLQLSQETVQEQKSRESVSIQRLSVAEDSLARLQNELFETKQNLKTSRENTKRAEEREIALNEQLTDADDSIQRLTTKLLETKVCLKSLQESMKKAEE 508
                 57778999*******************************************************************************************************************8888888889999*************************************************************************************************************************999988775 PP

  == domain 3    score: 28.9 bits;  conditional E-value: 2.6e-11
   TIGR02168 238 keeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglseg 509
                 +e+l  +++++++++++l e++  lk l+e++++ +++ s+l+eel+ +++ + +l++ + + ++++  ++e+ ++lek+l++++ ql+e++++  +le ++++  e  e+++++le+ +a+ +e    +e+lesr+e+l ++l++++++ ++l++++++ ++el +l+ +l+++++r++ lk+e+++le+k+ e e+el++l+++l+++ ++  +  e+ ++     +++++ lee++++++++ e++++ + r +++ + q n+ + + +
  MMETSP1061-20121228|9197_1 472 NEQLTDADDSIQRLTTKLLETKVCLKSLQESMKKAEEKESQLNEELNLADDSIASLNELLLEAKETLTSTQEQTAKLEKKLASTDVQLQEAKNSVSDLEHAVEKELEASEQMAASLEESQAQYAE---LKEQLESREESLSQALKSEKENGNKLKQEITEVRNELDQLQVSLSSSQHREKMLKHEVTKLEDKKRECEEELSNLKSNLDDTVQQSSKSLESVREKM--SAKAQKDLEELRKRMNQLVEDERKERCRQDVVYKEQINKLNQQ-Y 737
                 34444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444333333333333333333333333333...5556666666677777777777788888888888888888888888888888888888888888888888888888877766554444333332222..2344557777777777777777777777777766555554432.2 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 3e-05
   TIGR02168  232 lrleelkeeleeleeelkeaeeeleeleaelkel..eeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiael..qerlseeyeleleeaeeleekveeeeeeaeeelkrleekikeLGpVNlaAieEyeelkeRyeflekqkeDleeAkekL 1021
                  +   +++ee+e+l++e +e+ +e+e+l+ae + +  e+  + +++ k ++++e+++l++++q l+++i   e+e+++l ++                  +                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ++i e +++++ ++ +i++l+++++e+e++++ l+ ek +l+e+ ++ r++l   s +  +l+++v++l++e +++ +++ +l+++l++ +++  +   ++++s  y+ +  + ++l +     ++e +e +++l+ +  eL   N aAi + ++ ++R    e+  + l++ +++L
  MMETSP1061-20121228|9197_1  754 KCTAKKDEEIEQLRKESEENIREVEKLAAEERDKlmEKGKKMMKDIKDKKDKEIKDLTDDIQFLEKKIFGEEEEKQHLGQQ-----------------FQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NKIIEYKKKLQVASGRINTLSTDCDEFEDRIKLLEREKFKLREENDRYRRRLGGRSGSDTALQSQVETLQNEFKNAIDENRELKRKLQGHDMQSLHSvgEDSISTPYSRTRGNQSTLLQ----LRAEYDETIESLNDEKRELIMKNSAAITDVQKAEKRAWMTEQDNAILKQDVTSL 1009
                  111222222222222222222222222222111100111111222222222222222222222222222222222222222.................22.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22222233333333333333333333333333333333333333333333333333333333333333333333333333333333333322222211112222222222222222221....122223333333333333333333333333333333222111111111111111 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8  28.9   4.3e-10   8.9e-07     232     500 ..       5     279 ..       2     284 .. 0.86
   2 !   26.1  30.1   1.8e-10   3.6e-07     230     471 ..     276     516 ..     271     517 .. 0.88
   3 !   22.0  41.4     3e-09   6.2e-06     677     922 ..     496     746 ..     490     751 .. 0.88
   4 !    9.0  27.4   2.5e-05     0.051     221     506 ..     744    1039 ..     741    1060 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4.3e-10
   TIGR02169 232 elealekqkekiekelaeleeelekleeeieelekeleeiekklee...lnkkieklgeeeqlavkekleelkaeiek...leraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqa 500
                 e+ +l  +++++++e+++l +el k++e+++   ++  ++e++l++    +k+++++++e +l+++++ +el+ +++k   l  ++ + +++l+ + +r   +  e+++   e+e+ + + ++ ++  ++++e+++e k++ e++  e  + +k+ +e+r+++  l+e l+++   ++e +re++rl+++l +++e l++  + l +  ++  +l+++l ++  + ++ae+ + q  + le +++el    +++e l ke +el + ++e   q 
  MMETSP1061-20121228|9197_1   5 EVADLLSKMKNTQQEVEDLSNELSKCTENLKISIDRESQLEEELATwtgEAKNLQQKSNELSLELTKRTNELEYSQKKesgLTVEVTDLKNDLRILRKRCTGLGDEVNHFTLELEQSKCRERKLEISVKEWMERVQETKAQAETVSFEHMQCSKDLNESRQNTTRLEETLSETVAAKEEAEREIERLTNKLSETSESLEKSCKSLDQSMQRYLDLQNSLSDMTTRAEEAEHSATQRLQLLECVREELGSAAQTIETLGKEKEELTSSVKEWTSQT 279
                 566677778888899999999999999888866666666666665511167788888999999999998888877665222667888889999999999999999999999999999999999999999************************************************************************************************************************************99999988877665 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 1.8e-10
   TIGR02169 230 lkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaeke 471
                  ++ ++++   ++++++l++ +++l+++ee ++e ++++e+++ + eel + + k ++e +   k+ +++l+ e+  + +++++  ++l +a+  ++    ei+ l +e e+l+++i++ +   + l +el+e k++l+ +++ ++e + +   + ++l+ ++  l +l++el e k++l+   e+ kr+ee+   l+++l+++ ++i+ l ++l e +  +k  ++ +++++e+ +++++e
  MMETSP1061-20121228|9197_1 276 TSQTNEANSLCKQLQSRLQTTQNSLANSEEALSEAQEKIENLNTDKEELITSVAKWTSE-TDDAKSLVKSLRQELDDTVSTLNDTTDKLSQAQGINNLRIDEIEVLTAETENLKNKINHDEHSIDVLRNELHETKHRLQLSQETVQEQKSRESVSIQRLSVAEDSLARLQNELFETKQNLKTSRENTKRAEEREIALNEQLTDADDSIQRLTTKLLETKVCLKSLQESMKKAEEKESQLNEE 516
                 56677777788999999999999999999999999999999999999999999998875.56779999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999888888888888888888877777665 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 3e-09
   TIGR02169 677 lerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeie....keieelkakleeleeel.eeleaavreLeeelkdL.kkereeleaelrelekkkeeleaeiekkrkrlke 922
                 l++l+e +++ e+++++l +el+ ++  + +l++ l +a++ +   ++++ +le++ + +  +l+e ++++s le+++e++ e  ++++a +ee +++ a+lke+le+ e++ls+  ++  +e+ +kl++e+ ++++ l++++ +l++++ ++++l++e+ +l+++ +e+ee  ++++    ++++++ ++le+++e++ +++++ ++eL+++ ++L + er+e+  +    ++++++l+ +++++  rlke
  MMETSP1061-20121228|9197_1 496 LKSLQESMKKAEEKESQLNEELNLADDSIASLNELLLEAKETLTSTQEQTAKLEKKLASTDVQLQEAKNSVSDLEHAVEKELEASEQMAASLEESQAQYAELKEQLESREESLSQ-ALKSEKENGNKLKQEITEVRNELDQLQVSLSSSQHREKMLKHEVTKLEDKKRECEEELSNLKsnldDTVQQSSKSLESVREKMsAKAQKDLEELRKRMNQLvEDERKERCRQDVVYKEQINKLNQQYNRELLRLKE 746
                 68899*******************************************************************************************************9999876.678888999*****************************************9999988666550000556666777787777653678999*******9998356788899999999***********998777765 PP

  == domain 4    score: 9.0 bits;  conditional E-value: 2.5e-05
   TIGR02169  221 kreleltlllkelealekqkekiekelaeleeelekle.eeieelekeleeiekklee.lnkkieklgeeeqlavkekleelkaei...ekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeel......nelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseee 506 
                  ++e + ++l k   + ++++e+++ke +e  +e+ekl  ee+++l ++ +++ k++++  +k+i++l+++ q   k+  +e + ++   ++ +++i e++++l+ a  r++ +  + d+ + +i+ lere  + + e ++   +l  +     +l++++e +++e++++ +e  elk+kl+    +       +++ +  +r   ++  l + +ae  + +e++++++ el  +  ++   ++kae+++  +++d + +++ +  lk   ++le+ l + +++ +   aq + ++++
  MMETSP1061-20121228|9197_1  744 LKEGNSSELKKCTAKKDEEIEQLRKESEENIREVEKLAaEERDKLMEKGKKMMKDIKDkKDKEIKDLTDDIQFLEKKIFGEEEEKQhlgQQFQNKIIEYKKKLQVASGRINTLSTDCDEFEDRIKLLEREKFKLREENDRYRRRLGGRSGSDTALQSQVETLQNEFKNAIDENRELKRKLQGHDMQSlhsvgeDSISTPYSRTRGNQSTLLQLRAEYDETIESLNDEKRELIMKNSAAITDVQKAEKRAWMTEQDNAILKQDVTSLKLANQRLENMLADFQQDHSI-SAQTSLTQHN 1039
                  556666677777778888888888888888888888761445666666666666666514578999999988765655555554442336889999999********************************************************************************98655442112222567777889988889999999999999**********************************************************99998664.4444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       730  (0.177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        25  (0.00609459); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 3.22u 0.21s 00:00:03.43 Elapsed: 00:00:01.80
# Mc/sec: 809.53
//
Query:       MMETSP1061-20121228|9198_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1569.20
//
Query:       MMETSP1061-20121228|9199_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.7   0.0      0.046   11.5   0.0    1.6  1  TIGR04153 cyanosort_assoc: cyanosortase-associated protein


Domain annotation for each model (and alignments):
>> TIGR04153  cyanosort_assoc: cyanosortase-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   1.1e-05     0.046     131     172 ..     155     196 ..     147     200 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.1e-05
   TIGR04153 131 lllwllGq.edllderCLwtelsiplseeksleeteqlLekaW 172
                 ++ +  G+ +  + +rC wt lsip+  ++++++ + ++ +aW
  MMETSP1061-20121228|9199_1 155 IIHYGCGRdQYAMAHRCWWTCLSIPVDYQSQPHAGAIAI-EAW 196
                 66667788666789************5555555444444.456 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 2458.91
//
Query:       MMETSP1061-20121228|9201_1  [L=796]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (796 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.11s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 2693.93
//
Query:       MMETSP1061-20121228|9203_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 953.73
//
Query:       MMETSP1061-20121228|9204_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1501.94
//
Query:       MMETSP1061-20121228|9205_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.61
# Mc/sec: 718.37
//
Query:       MMETSP1061-20121228|9206_1  [L=1496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.7e-285  946.3  13.5   1.7e-160  534.0   0.0    3.3  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   1.8e-157  523.9  16.7    3.7e-89  297.6   0.0    4.1  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   6.7e-105  349.7  14.8    3.2e-59  198.7   0.0    3.1  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
   5.9e-100  333.3   2.8    1.5e-66  222.9   0.0    2.7  3  TIGR00958 3a01208: antigen peptide transporter 2
    1.3e-98  328.7  11.0    4.1e-64  214.9   0.0    3.1  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
      2e-97  325.2   0.5    9.7e-69  230.4   0.0    3.2  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.2e-96  321.1   5.0    3.3e-62  208.7   0.0    3.1  3  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.3e-91  306.0   4.0    9.5e-48  161.2   0.0    3.2  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    4.6e-91  304.0  15.7    5.3e-57  191.4   0.1    3.4  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
      2e-90  301.8   0.0    1.7e-51  173.3   0.0    3.1  3  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.5e-88  294.8   4.8    9.1e-61  203.7   0.0    3.0  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    8.5e-78  260.3   0.0    1.4e-48  163.7   0.0    2.5  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    3.4e-75  251.4  10.8    3.8e-40  135.7   0.0    3.3  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    5.2e-68  227.9   0.1      2e-47  159.9   0.0    2.2  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    1.6e-43  146.7   0.0    9.9e-24   81.9   0.0    2.5  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.8e-43  146.5   0.2    6.3e-26   89.1   0.0    2.8  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    5.7e-40  135.0   0.0    6.6e-23   79.2   0.0    2.3  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    5.7e-38  128.6   0.0    2.7e-19   67.4   0.0    2.5  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.2e-37  127.2   0.0    2.5e-18   64.2   0.0    2.7  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    6.9e-37  125.0   1.5      4e-23   79.9   0.0    3.2  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.1e-36  124.7   0.4    4.6e-18   63.4   0.1    2.6  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.2e-36  124.3   0.6    6.2e-23   79.4   0.0    3.3  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.4e-36  122.7   2.4    1.8e-18   64.8   0.0    3.3  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    9.2e-36  121.6   1.9    1.5e-19   68.3   0.0    3.2  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.1e-35  121.2   6.0    2.7e-23   80.5   0.3    3.3  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.1e-34  117.9   2.0    2.6e-21   74.2   0.0    3.4  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.2e-34  116.7   0.3      1e-17   62.3   0.0    3.3  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.3e-34  116.3   2.4    4.5e-18   63.2   0.0    3.1  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    5.8e-33  112.3   3.8    1.3e-19   68.6   0.0    3.3  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.5e-32  109.2   1.5    5.9e-17   59.5   0.0    2.7  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.1e-31  108.0   2.9    7.9e-19   65.7   0.0    3.2  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    2.6e-31  106.9   6.1    5.4e-22   76.3   0.1    3.1  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.8e-31  106.6   9.0    2.6e-15   54.4   1.6    4.2  3  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    7.7e-31  105.0   4.2    1.6e-11   41.7   0.1    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    4.5e-29   99.5   0.4    5.1e-14   50.2   0.1    3.0  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    6.1e-29   98.9   0.0    9.7e-14   49.3   0.0    2.6  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.3e-28   97.0   5.6    1.2e-15   55.4   0.0    3.4  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.8e-28   97.0   1.9    2.9e-15   54.4   0.0    3.1  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.7e-27   93.4   0.2    2.1e-13   47.8   0.0    2.4  2  TIGR01288 nodI: nodulation ABC transporter NodI
    3.6e-27   92.9   2.7    7.6e-16   56.0   0.0    3.3  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    1.2e-26   91.2   0.0    3.1e-15   53.5   0.0    3.3  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.5e-26   90.9   1.1    1.4e-11   41.5   0.0    3.2  3  TIGR00955 3a01204: pigment precursor permease
    1.9e-26   90.7   9.8      2e-15   54.6   0.0    3.7  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    3.9e-25   86.7   1.1    9.6e-16   55.9   0.0    3.0  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      4e-24   83.4   0.1    7.7e-14   49.8   0.0    2.5  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.4e-23   81.0   7.9    6.5e-08   29.4   0.1    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.1e-22   77.5   2.6    6.1e-06   23.7   0.0    4.3  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.1e-20   71.4   6.9    2.4e-14   50.5   0.9    3.9  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    5.7e-20   69.4   9.7    3.8e-09   33.8   0.0    4.0  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    6.1e-19   66.4   3.0    1.9e-12   45.2   0.1    3.2  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    3.7e-18   63.7   0.9    0.00015   19.2   0.0    4.2  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    4.7e-18   62.9   2.6      8e-06   22.5   0.1    4.1  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    8.8e-18   62.4   6.4    3.4e-09   34.3   0.3    3.5  3  TIGR01978 sufC: FeS assembly ATPase SufC
    2.5e-13   47.3   1.1    3.3e-06   23.8   0.0    3.6  4  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.2e-12   44.2   3.2    1.2e-05   20.9   0.3    3.2  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    2.9e-11   38.8   4.4    6.9e-07   24.3   0.0    2.5  3  TIGR01257 rim_protein: rim ABC transporter
    1.7e-06   25.5   0.0     0.0026   15.1   0.0    3.0  3  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    1.2e-05   21.6   7.4     0.0067   12.5   0.1    3.6  4  TIGR00630 uvra: excinuclease ABC subunit A
    0.00077   16.5   0.3      0.027   11.4   0.1    2.3  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
      0.001   16.7   0.2       0.54    7.8   0.0    2.7  2  TIGR00231 small_GTP: small GTP-binding protein domain
     0.0048   13.7   0.9       0.03   11.1   0.0    2.5  3  TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ
      0.009   12.9   0.3       0.38    7.5   0.1    2.5  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.009   13.1   1.0       0.33    7.9   0.2    2.3  2  TIGR01420 pilT_fam: twitching motility protein
  ------ inclusion threshold ------
       0.01   13.5   1.1       0.17    9.5   0.0    2.9  2  TIGR00101 ureG: urease accessory protein UreG


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  189.3   5.8   2.7e-58   1.7e-56     216     620 ..      85     508 ..      71     564 .. 0.85
   2 !  228.0   0.2   5.6e-70   3.6e-68     652     887 ..     629     874 ..     602     880 .. 0.90
   3 !  534.0   0.0  2.6e-162  1.7e-160     918    1517 ..     866    1482 ..     848    1486 .. 0.91

  Alignments for each domain:
  == domain 1    score: 189.3 bits;  conditional E-value: 2.7e-58
   TIGR00957 216 wwitklivrgyrqpleesdlwslkkedtseevvpvlvenwkkeekktrkqkvkvvyakkdpakpkesskldaneeveallvkspqkerkpsllkvlyktfgs.yfllsflfkaiqdllsfagpkllellikfvn............drka.......pdwqgylytallfvsallqtlvlqqyfhiifvsgvriktavvgavyrkalvitnsarksstvgeivnlmsvda...qrfmdlatylnllwsaplqvilalyllwlnlgpsvlagvavmvllvplnavvavktktyqvaqmkskdnriklmneilngikvlklyawelafkdkvlairqeelkvlkksaylaavg.tftwvctpflvalitlavyvtvdennildakkafvslalfnilrlplnilpmvisslvqasvslkrlriflsqeele 620
                  ++  l+  g r+ le+sd+     ed++e+      ++w  + + +r ++  +   kk+        + +a    e   + +p   ++ps++ +l ++fg   f+ +++++++  ll f+   +l+ l+k+ +            d +a       p    +l  + l +  ll +l+  ++  i+  +gv ++t+v  ++yrkal ++ + r  ++ g++vn+ms d+   qrf+++a +      aplq++++l+l+++++g +   gva+mv+l+p+n  v   +  ++ + +k  d+r+k+mneil gi+++k+yawe  f ++v  +r +e+  l k +y+ avg ++  + tp++  +i +  yv ++++  l a +af ++alfn++r+p+ ++pm + +++q+ +slkrl+ +l+  el+
  MMETSP1061-20121228|9206_1  85 SYLNPLLSLGSRKVLESSDVGVPSAEDQAERAYSSAKKAWDDQVELCRIHNEPLLEKKKEQE-AMIQQQKEAGIVLEGKDAPKPIVLKEPSVMMALGHSFGMgRFFRAVVYQIVSSLLGFVPVLILNNLVKYFEsyayyqmaitdgDVEAaeqvrldPVINPWLQVVALGIVPLLVSLLQTRHNAIMCHCGVFVRTSVSTMLYRKALTVSAAGRAMTSTGQVVNMMSNDTmqlQRFLQFAGFTA---IAPLQIVISLFLIYKQVGNATWVGVAYMVFLMPMNMKVFSMLGNMRRKVLKYSDSRVKMMNEILTGIRIIKFYAWERPFGKEVDRVRGKEMDALTKMSYVVAVGfSIILLSTPIIQPIIVFLTYVNIQDQP-LTAATAFTTVALFNLMRFPFAFMPMGLLQFIQSKISLKRLERYLALPELN 508
                 355667889***************************************99999888775433.2233333444444444455667779*************6379999**********************9865222222222222223322223335567789999999999999*99999999999***************************************99744477777777765...59**********************************99999999***********************************************************94467789****************9876.7899****************************************998886 PP

  == domain 2    score: 228.0 bits;  conditional E-value: 5.6e-70
   TIGR00957 652 ptlngltlsipegalvavvgqvgcgkssllsallaemdkveg.kval.........kgsvayvpqqawiqndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysd.adiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqvdviivlsdgkisemgsyqelldrdgafaeflrtyasaedeldaeddgvasvsaedkeak 887
                  tl+++t +i  g+lva+vg vg gkss+lsa+l+em+ + g kv +          g ++y  q  w+ nd+l+ nilfg++ +e++y++++ acal  d+ +lp+gd+teige+g+nlsggqk rvslara+ys  + + l+ddplsavd+hv+ h+f + i  + + +++trilvth +  l + d +iv+ +g i   g yq+l+d+   fa  +     ++ + + e++   +v+ +dk+ k
  MMETSP1061-20121228|9206_1 629 ITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGsKVYIprsddekeaDGYISYCTQSPWVVNDTLKGNILFGRPYDEDRYQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSAkTRLLLMDDPLSAVDSHVGEHLFSNAIAGE-VGQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLIDQGVDFAGAVDVSKIQKSDSSDEEEADDAVGKSDKKQK 874
                 499*************************************9855655333333222689****************************************************************************962678999******************99765.779*********************************************9998888888888888887888888888776 PP

  == domain 3    score: 534.0 bits;  conditional E-value: 2.6e-162
   TIGR00957  918 s.....rhlsssaelqkaeakeetwklmeadkaqigqvklsvywdyakaiglfitllsillflcnsvsalasnywlslwtdda.vvdg.....tqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatp.laaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfav..isrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeyse.tekeapwqieetap.psswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesa.egeiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqq.rgifysma 1517
                        +++ss +  +k   k++  +l+ ++  + g+v    y +y+ka g ++++l+il+    ++  + s +wl++w++    +++     t+++t+  +++++ lg l  + +    + +++  + as+ lh  l  +vlr+p sff+ tp g+++nrf+ ++d +d  l++ +   ++++f+v+ga+  il+at   + v ++pl++ly ++q+++  +s +l+r+ s++ sp+++ f++tl g+s ira+  q+ f ++     d+ + +y    +a  wla+rl+++g  i +f   +av  +    + ag +gl++sys++vt yl++ v+m + le+++ +ver+  y++  e eap +i e  p p +wp +g++e+ n s+ryr++  lvl+dl+ t++ggek+g+ grtg+gkssl ++lfri e   +g i +dg++i +ig   lr +++iipqdpv+fs ++r nldpf++ sdee+w  l+   + + ++ lp++ld   aeggen+s gqrql+c+ar+llrk kilv+deata++d etd  iq  ir +f d tvltiahrlntimd  r+lvld g +ae+d+p +ll++  g f +m 
  MMETSP1061-20121228|9206_1  866 VgksdkKQKSSGKGEDKNAQKKAGANLVSKEEREEGDVATDAYVQYMKAGGYCVAILTILIQGMGRAFEILSTFWLAVWAEKMqAAEAlgtpfTNQQTSYYVGIFGLLGFLSILGLGFRGIFLAMHRLKASQKLHDGLTDAVLRAPISFFDVTPVGRVLNRFAADMDKLDLELTQTVSQGINTFFQVLGALGAILVATKgTFIVPLIPLGFLYHVIQKWFRKTSTELQRVTSIANSPIFADFSQTLSGTSSIRAYGVQDGFFKKCKNSFDNMNASYLLVQLASYWLALRLDVMGGAIGMFIGAIAVgtLETGFIPAGWLGLALSYSIEVTSYLKYGVQMIARLEADMSSVERILYYTDnIEPEAPDVIPEKDPePGTWPLKGEIELSNASMRYRDG-PLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIEkDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFATTSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKKeSGHFKAMV 1482
                  13444344444444455555668889***********************************9999999999********9986333323333467899999********9998888888999999*********************************************************************9999725666689****************************************************************99999999*********************999999334455699*****************************************862799******99998799******************87.7**************************************75269*********************************************************************************************************************************************************************986268888886 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1    0.0056      0.36       1      62 [.      68     129 ..      68     144 .. 0.84
   2 !   65.8   6.3   4.8e-21     3e-19     124     376 ..     250     502 ..     246     510 .. 0.86
   3 !  156.4   0.0   2.2e-48   1.4e-46     441     644 ..     630     845 ..     603     865 .. 0.87
   4 !  297.6   0.0   5.7e-91   3.7e-89     921    1451 ..     961    1484 ..     939    1490 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0056
   TIGR01271   1 mqrspvekanvlsklffswtrpilrkgyrkklelsdiykipsvdsadnlseklerewdrela 62 
                 m++s  ++an    +f+s+ +p+l  g rk le sd+    + d a+      ++ wd ++ 
  MMETSP1061-20121228|9206_1  68 MEQSLEDRANCWQLWFMSYLNPLLSLGSRKVLESSDVGVPSAEDQAERAYSSAKKAWDDQVE 129
                 56666678999999***********************8766779999999999****98764 PP

  == domain 2    score: 65.8 bits;  conditional E-value: 4.8e-21
   TIGR01271 124 lalglsllfivrtlllhpaifglhhlgmqlrialfsliykktlklssrvldkistgqlvsllsnnlnkldeglalahfvwiaplqvvllvgliwelleasafcglgflillalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycweeamekiienirqvelkltrkvayvryfsssafffsgllv.vvlsvvpyalikg..iilrrifttisycivlrmtvtrqlpsaiqtwydslgairkiedfl 376
                 +alg+  l++  +   h ai+   h g+ +r ++ +++y+k l +s+      stgq+v ++sn+  +l+  l +a f  iaplq+v+ + li++++ ++++ g++++++l  ++  +  ++++ r k     + r+ +  ei+  i+ +k y+we  + k ++ +r +e++   k++yv     s  ++s+ ++  ++  + y  i+   +     ftt++   ++r+  +  +p+ +  + +s   ++++e +l
  MMETSP1061-20121228|9206_1 250 VALGIVPLLVSLLQTRHNAIM--CHCGVFVRTSVSTMLYRKALTVSAAGRAMTSTGQVVNMMSNDTMQLQRFLQFAGFTAIAPLQIVISLFLIYKQVGNATWVGVAYMVFLMPMNMKVFSMLGNMRRKVLKYSDSRVKMMNEILTGIRIIKFYAWERPFGKEVDRVRGKEMDALTKMSYVVAVGFSIILLSTPIIqPIIVFLTYVNIQDqpLTAATAFTTVALFNLMRFPFA-FMPMGLLQFIQSKISLKRLERYL 502
                 678888888888888888986..6************************************************************************************************************************************************************9998888888875431345556666665511455677888887777777664.46666666666666667777666 PP

  == domain 3    score: 156.4 bits;  conditional E-value: 2.2e-48
   TIGR01271 441 vlknislklekgqllavagstgsgkssllmmilgelep..........segkikhsgrisfspqvswimpgtikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravyk.dadlylldspfsyldvvtekeifesclckll.anktrilvtsklehlkkadkilllhegscyfygtfselqakkpdfssk 644
                  l+ni+ +++ g l+a+ gs gsgkss+l  +lge+e           s+      g is+++q +w++  t+k ni+fg  yde ry++++ ac le+dia+l+  d+t +ge gi lsggq+ar+slara+y   + l l+d p+s +d     ++f + +   +   +trilvt ++  l ++d ++++ +g+    g + +l ++  df+  
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESiggskvyiprSDDEKEADGYISYCTQSPWVVNDTLKGNILFGRPYDEDRYQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVgQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLIDQGVDFAGA 845
                 489********************************9962221111112344445679*****************************************************************************72568999*****************999986551679**************************************9999854 PP

  == domain 4    score: 297.6 bits;  conditional E-value: 5.7e-91
   TIGR01271  921 stsayyilyiyvgvadsllalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilv.aaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavvfiaiatndeg...egevgiiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrl..lstegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkqydsiqkllneas.llkqalsa 1451
                  + ++yy+    +    s+l lg +rg+ l    l  s++lh+ +  +vl+ap++ ++    gr+lnrf+ d+  +d  l  t+ + i+  + vlga+ ++ v    +++   ip+  ++ v++ +f +ts +l+++ s a spif+ +  +l g  ++ra+g q  f    + +++   a ++l   +  w+ lr+d++   + + +  ia++t + g    g +g+ l+ +++++s l++ v+    +++ m sv+r++ + d  +              + +++ e++    +wp +g++++ + +++y  +g  vl+dlsf+v++g+++g+ grtgsgks+l+ al+r+  ++ +g i +dgv    +     r+ + +ipq   ++s t+r nldp++  sdee+w v ++v +  vi q+p+ ld  + +gg  +s+g +ql+c+ars+l k kil++de +a +d  t   i++ +++ fs+ tv+   hr++++++ +++lv+++ ++ + d+ + ll++ s ++k ++ +
  MMETSP1061-20121228|9206_1  961 QQTSYYVGIFGLLGFLSILGLG-FRGIFLAMHRLKASQKLHDGLTDAVLRAPISFFDVTPVGRVLNRFAADMDKLDLELTQTVSQGINTFFQVLGALGAILVATKGTFIvPLIPLGFLYHVIQKWFRKTSTELQRVTSIANSPIFADFSQTLSGTSSIRAYGVQDGFFKKCKNSFDNMNASYLLVQLASYWLALRLDVMGGAIGMFIGAIAVGTLETGfipAGWLGLALSYSIEVTSYLKYGVQMIARLEADMSSVERILYYTDNIEP------------EAPDVIPEKDPEPGTWPLKGEIELSNASMRYR-DGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRIseIEKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFATTSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKKESgHFKAMVEK 1484
                  4456666433333345889999.5*****99999***************************************************************9998887777651579***************************************************98888888888888888888877889********965554444555555555543338****************************************984332............123556666667789****************6.799***********************************93345689*********************************************************************************************************************************************************************98665277765544 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   6.3   1.3e-08   8.3e-07     192     447 ..     251     505 ..     245     512 .. 0.90
   2 !  127.1   0.1   2.3e-39   1.5e-37     482     690 ..     630     837 ..     624     840 .. 0.90
   3 !  198.7   0.0     5e-61   3.2e-59     462     692 ..    1245    1474 ..    1212    1477 .. 0.96

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 1.3e-08
   TIGR03375 192 aiGvalvlvfdlvlkllRsylldvagkkvdlilsaklfervlglrlearp.asvGsfasql.refesvrdfltsatltalvDLpfvllfllvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklp 447
                 a+G++    +  +l++    ++   g  v +++s++l++++l ++ + r  +s+G +++ +  +  +++ fl  a  ta++ L +v+  l++i+   g+  +v ++ +++++ +++ +  +l ++ ++ l+ s ++  ++ e l+g+  ik  + e+ + k+ ++v ++  ++ +k+  + a+  ++  l + +++ ++v +   +i+++ lt  +   +v L   +  P+a + + l ++ q+k +l++l++ ++lp
  MMETSP1061-20121228|9206_1 251 ALGIVPL--LVSLLQTRHNAIMCHCGVFVRTSVSTMLYRKALTVSAAGRAmTSTGQVVNMMsNDTMQLQRFLQFAGFTAIAPLQIVI-SLFLIYKQVGNATWVGVAYMVFLMPMNMKVFSMLGNMRRKVLKYSDSRVKMMNEILTGIRIIKFYAWERPFGKEVDRVRGKEMDALTKMSYVVAVGFSIILLSTPIIQPIIVFLTYVNIQDQPLTAATAFTTVALFNLMRFPFAFMPMGLLQFIQSKISLKRLERYLALP 505
                 4444433..3356777777788888999999**************998752799**99999447899****************9765.5666777777889************************************************************************************************99999999************************************************99887 PP

  == domain 2    score: 127.1 bits;  conditional E-value: 2.3e-39
   TIGR03375 482 aLknvslkikpGekvaiiGriGsGKstllklllglyepteGs.vlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallk.dppillLDEPtsalDnss.eekllerLkella.dkTlvlvtHrtslLelvdriivldkGrivadGpkdevle 690
                 +L+n++ +ikpG+ vai+G +GsGKs++l  +lg +e   Gs v++   d    d ++    i+y +q ++  + tl+ Ni +g+p+ ++++   ++++  +++ ++  p+G ++ igerG +LSgGQ+  v+laRa+++ ++++ll+D+P sa+D++  e+ + ++++  +  ++T +lvtH+ ++L  +d +iv+++G+i  +G  + +++
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSkVYIPRSD----DEKEADGYISYCTQSPWVVNDTLKGNILFGRPY-DEDRYQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVgEHLFSNAIAGEVGqGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLID 837
                 699************************************99637777666....77889999************************5.6667788999999************************************9863789************986255666778876666*******************************99887766 PP

  == domain 3    score: 198.7 bits;  conditional E-value: 5e-61
   TIGR03375  462 lkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyep.teGsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdevleal 692 
                  lkGeiel+n s++Y+ +   +Lk++s+++k Gek+++ Gr+GsGKs+l+  l ++ e  ++Gs+ +dgvdi +i  a lr+ni+++pqd+++f+ t+r N+   a  ++deel  +++++ + e++++ pkGld  ++e+Ge++S GQrq++ +aR ll++p+il++DE t+++Dn++++++ + ++e  +d T++ ++Hr + +   dri+vld+G+i   ++ d++l++ 
  MMETSP1061-20121228|9206_1 1245 LKGEIELSNASMRYR-DGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIeKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFAT-TSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKKE 1474
                  89************5.6899*******************************9999986268*****************************************9987.89**************************************************************************************************************9988888888875 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   1.7       7.7     5e+02     232     367 ..     277     414 ..     247     448 .. 0.60
   2 !  109.7   0.0   4.3e-34   2.7e-32     496     703 ..     630     838 ..     624     843 .. 0.86
   3 !  222.9   0.0   2.4e-68   1.5e-66     196     711 .]     959    1482 ..     947    1482 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 7.7
   TIGR00958 232 inlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEe...kEasrfk 367
                 +++ + + l+++ l   ++   ++ tG+++  +s+Dt ++ + l       +  l  +++l+ ++ +   + t v +  + +++ ++ ++ ++  ++ ++v +      ++ +E l g+r ++ +a E    kE++r +
  MMETSP1061-20121228|9206_1 277 VRTSVSTMLYRKALTVSAAGRAMTSTGQVVNMMSNDTMQLQRFLQFAGFTAIAPLQIVISLF-LIYKQVGNATWVGVAYMVFLMPMNMKVFSMLGNMRRKVLKYSDSRVKMMNEILTGIRIIKFYAWERpfgKEVDRVR 414
                 55555666666666666666677888999999999998888888776666665555554444.4444444445554444333333333323333333344434444455677888888888888888843336666655 PP

  == domain 2    score: 109.7 bits;  conditional E-value: 4.3e-34
   TIGR00958 496 vlkdLtftlepGevvalVGPsGsGKStvaa.llenlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvr.kPrvLiLDeAtSALDaev.eqllqe...sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmek 703
                  l+++t  ++pG+ va+VG  GsGKS++ + +l ++    g +v +   + ++         +    q P + + +++ Ni +G   +++++ ++   a+  +d i  l+ g +te+ge+G  lsgGqk r+ +ARA+   k r+L++D+  SA+D++v e+l+ +    +  ++rt +l++h+ ++  ++d ++v+++g+++++G++++L ++
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSaMLGEMESIGGSKVYIPRSDDEKE----ADGYISYCTQSPWVVNDTLKGNILFGR-PYDEDRYQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVgEHLFSNaiaGEVGQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLIDQ 838
                 489************************986166666666666798887775444....445578899*****************5.567888899999999************************************9753889*************873566666665567799************************************987 PP

  == domain 3    score: 222.9 bits;  conditional E-value: 2.4e-68
   TIGR00958  196 svealakaiflltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqe..avakanqva..eEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyldR.kPqlel...sgtlapk..nleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYq.PtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked.vykqlv 711 
                  + ++ +  + +++ll ++S l  g+rg  + +   + +++++  l  ++lr  i Ffd +++G +  R ++D  ++   l+++v+  + +  ++lg+l+ +l       +v l+  Pl  ++ +v+ k+++k+s+e+q   ++a++   a     lsg   +r ++  ++  ++ k+  +++   +   +la   + +  +++g +i + + a+ +  + +g +  g L   l Y +++++++++ +++  +l     + e++  y+d  +P+ +    +   +p    l+G++e ++ s  Y       vlkdL+ft++ Ge + + G  GsGKS+ +  l +  +  + G++ +Dg+++ e+    l++++ ++ q+Pv+fs ++r N+     +t dee+  + k+    + i +l+kg d  v e G+  s Gq+q + iAR L+rkP +L++DeAt+ +D e+++++q+   +++++ tvl iahrL+t+  +d+ilvl  g++ el t ++L +ke   +k++v
  MMETSP1061-20121228|9206_1  959 TNQQTSYYVGIFGLLGFLSILGLGFRGIFLAMHRLKASQKLHDGLTDAVLRAPISFFDVTPVGRVLNRFAADMDKLDLELTQTVSQGINTFFQVLGALGAILVATKGTFIVPLI--PL-GFLYHVIQKWFRKTSTELQRvtSIANSPIFAdfSQTLSGTSSIRAYGVQDGFFKKCKNSFDNMNASYLLVQLASYWLALRLDVMGGAIGMFIGAIAVGTLETGFIPAGWLGLALSYSIEVTSYLKYGVQMIARLEADMSSVERILYYTDNiEPEAPDvipEKDPEPGtwPLKGEIELSNASMRYRDG--PLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLD-PFATTSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRmiRENFSDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKKESgHFKAMV 1482
                  5556666677899999*****999997777777778899************************************************************998777766667776..44.55678999***********63367777777743589********************************************************999999**************************************************97566665410033333322269*************555..589**************************98777777772568***********************************999987.4667889**************************************************************************877899************************************99988776888886 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   5.8     0.041       2.6      59     277 ..     252     467 ..     219     481 .. 0.78
   2 !  108.0   0.1   1.4e-33   9.3e-32     348     560 ..     630     840 ..     615     851 .. 0.87
   3 !  214.9   0.0   6.4e-66   4.1e-64      78     562 ..     987    1478 ..     959    1485 .. 0.85

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.041
   TIGR02203  59 llvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllyl...sWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvaf 277
                 l +v l+v   + +   + ++ +  + v +++ + l+ k lt+++a    +s+g++++ + +d+ q  + +  +  + +    +vi+l+ +   +    W     +v l+P+   + ++    l ++ +++ +      k+++e l g r +k ++ +    k  d+v  + ++   k+    ++  +++ l + +   ++++++ v+ q++ lt+ +  + 
  MMETSP1061-20121228|9206_1 252 LGIVPLLV--SLLQTRHNAIMCHCGVFVRTSVSTMLYRKALTVSAAGRAMTSTGQVVNMMSNDTMQLQRFLQFAGFTAIAPLQIVISLFLIYKQVgnaTWVGVAYMVFLMPMNMKVFSM----LGNMRRKVLKYSDSRVKMMNEILTGIRIIKFYAWERPFGKEVDRVRGKEMDALTKMSYVVAVGFSIILLSTPIIQPIIVFLTYVNIQDQPLTAATAFTT 467
                 44444433..3445555677888888888899999*********************************999999889998888888887554333111455444555555555555544....5666666666777777888999*****************************************999999999999999999999999999998765443 PP

  == domain 2    score: 108.0 bits;  conditional E-value: 1.4e-33
   TIGR02203 348 aldsislkveaGevvalvGrsGsGkstlvn.llpRFyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallk.daPiLiLDeatsaLDne.seRlvqaaLe.rlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnG 560
                 +l++i  ++++G  va+vG  GsGks++++ +l    ++   ++ +   d +    ++    +++ +q   + +dt+  n+ +g+   +de++ +++++a  l+d +  lp G +te+Ge+g +LsGGq+ R+++aRa++   + +L++D+  sa+D+   e l  +a+  ++ +gRt +++ h +  + + D ++v+++G i  +G +++L+++  
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSaMLGEMESIGGSKVYIPRSDDE----KEADGYISYCTQSPWVVNDTLKGNILFGRP--YDEDRYQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHvGEHLFSNAIAgEVGQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLIDQGV 840
                 799***********************98762666665555566666555432....345578***********************9..9999999********************************************972578999*********983588888888549*****************************************9865 PP

  == domain 3    score: 214.9 bits;  conditional E-value: 6.4e-66
   TIGR02203   78 llakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvv....eealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvl.lialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDs.ppekdeGtraler......vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepds.GeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarn.GlY 562 
                  +la+   k  ++l   l + +l++p ++fd +++g++l+r+  d ++   ++t+ +   +   ++v+g+l  +l    + t+i v l+P+ ++l +v++k +rk s e q++++ +++ +    +++l+g   ++ +g q+   k+ ++  +++    l v+ as      ++ ++  a+++ + +ia+ + ++g + +G l   ++  + +++ lk   ++ a+l   + + e+++   D+ +pe+ +   +++        +G++e+ n ++ry++ +  +l+++s++v+ Ge + + Gr GsGks+l+  l R  e+++ G+i +Dgvd+ ++  a LR++++++ qd v+F +ti  n+   ++  ++++e+ ++l++  + +++ +lp+Gld  v e g + s GqRq l iaR+ll+   iL++Deat+++Dne + ++q  + +   + t l iahRL ti ++Dri+vlddG+i e  t  +Ll+++ G++
  MMETSP1061-20121228|9206_1  987 FLAMHRLKASQKLHDGLTDAVLRAPISFFDVTPVGRVLNRFAADMDKLDLELTQTVSQGINTFFQVLGALGAILVAT-KGTFI-VPLIPL-GFLYHVIQKWFRKTSTELQRVTSIANSPIfadfSQTLSGTSSIRAYGVQDGFFKKCKNSFDNMNASYLLVQLASYWLALRLD-VMGGAIGMFIgAIAVGTLETGFIPAGWLGLALSYSIEVTSYLKYGVQMIARLEADMSSVERILYYTDNiEPEAPDVIPEKDPepgtwpLKGEIELSNASMRYRD-GPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIEKdGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFAT--TSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKKEsGHF 1478
                  56666667778888899999***************************************************999765.44554.556675.8999*************99977655543322339***************987666655544444444444444444444444.4455666655378888999999******999999*****************************999973445433322221112234479************96.6779***********************************98744***************************************975554..799***********************************************************************************************************************8752665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   0.2   6.3e-32     4e-30     468     678 ..     630     842 ..     623     847 .. 0.88
   2 !  230.4   0.0   1.5e-70   9.7e-69     206     684 ..     994    1484 ..     973    1486 .. 0.85

  Alignments for each domain:
  == domain 1    score: 102.7 bits;  conditional E-value: 6.3e-32
   TIGR03797 468 vLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralv.rkPrillfDEATSALDNrtQaiV.sesle...klkvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlf 678
                 +L++++ +i+pG  vaivG+ GsGKS++l  +Lg  +   Gs +y  +     d ++    +    Q   ++ +++  ni+ g ++  d+ ++ ++  +le+Di  +P g  T i e g +lSGGQ+ R+ +Ara+   k r+ll+D+  SA+D +  ++  s++++       tRi++ H +  ++++d ++v+e+G +  qG y++L+ ++  f
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKVYIPRS---DDEKEADGYISYCTQSPWVVNDTLKGNILFGRPYDEDRYQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYsAKTRLLLMDDPLSAVDSHVGEHLfSNAIAgevGQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLIDQGVDF 842
                 799*******************************888888877775543...35666677888999*********************************************************************97369***************9987761555542223567************************************986555 PP

  == domain 2    score: 230.4 bits;  conditional E-value: 1.5e-70
   TIGR03797  206 avdaslqaavwdrLLrlpasfFreysagdLasramg.vsqirrllsgatlkallssifallnlvlllvyslklalvavl.lalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaakls...lgsflafntafgsflk.a...vtslaetlievlavvplyerakPileaepEv.deekvdpgk..LsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgF.ekPesGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslek..lkvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLla.keGlfaelarR 684 
                  +++ +l+ ++ d +Lr p sfF    +g +++r  + ++++   l++++ + + + +  l  l+ +lv  +   +v ++ l ++  ++  +   + ++ +r +   ++ +++   q ++g s +r  g+++ +f +  ++f + ++ +l +q ++ +l+   +v+     + + a+a+ +l++  +    lg  l++++ ++s+lk +   + +l + +++v +++   + ++P   + p+v  e+  +pg+  L+G+ie+++ + rY +dgplvL+d+s++++ Ge +++ G  GsGKS+l+  L+   e  + Gs++ DG d+ ++ ++a+R+++ ++ Q+  ++s++i  n+   a+++ +e w++++++ + e i ++P gl  +++egg++ S GQrQ l iAr+l rkP+il++DEAT  +DN+t a++   + +    +t + iAHRL Ti+++drilvl++G+++e  + ++Ll+ ++G f++++++
  MMETSP1061-20121228|9206_1  994 KASQKLHDGLTDAVLRAPISFFDVTPVGRVLNRFAAdMDKLDLELTQTVSQGINTFFQVLGALGAILVATKGTFIVPLIpLGFLYHVIQKWFRKTSTELQRVTSIANSPIFADFSQTLSGTSSIRAYGVQDGFFKKCKNSFDNMNASYLLVQLASYWLALRLDVMGGAIGMFIGAIAVGTLETGFIPagwLGLALSYSIEVTSYLKyGvqmIARLEADMSSVERILYYTDNIEP---EAPDViPEKDPEPGTwpLKGEIELSNASMRY-RDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRIsEIEKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFATTSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIREnfSDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKkESGHFKAMVEK 1484
                  45678999************************9765499*******999998888888888999988887776666655166777788889999999999999999999*************************************************9999999888888888888887755444411134556777776666552300033344444444455555555555...55554155667888555**************.8*********************************999987356778********************************************************************************************************************99999988653257999*********************************994579**999875 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   2.5      0.47        30      65     216 ..     253     403 ..     222     469 .. 0.65
   2 !  108.9   0.0   8.9e-34   5.7e-32     354     566 ..     629     840 ..     621     848 .. 0.86
   3 !  208.7   0.0   5.2e-64   3.3e-62      75     565 ..     981    1474 ..     952    1483 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.47
   TIGR02204  65 lvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlv..itsvkltsl..vllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayase 216
                  +v l+++l  +    ++ + G  v + +   ++ + l++s+a  + +++g+v+  ++ dt +l+  +  +   a+  l ++i  l ++   + ++   ++  ++  +P+ +    ++g   rk+ + s  r+       +e l+ i+ ++ ya e
  MMETSP1061-20121228|9206_1 253 GIVPLLVSLLQTRHNAIMCHCGVFVRTSVSTMLYRKALTVSAAGRAMTSTGQVVNMMSNDTMQLQRFLQFAGFTAIAPLQIVIS-LFLIYkqVGNATWVGVayMVFLMPMNMKVFSMLGNMRRKVLKYSDSRV----KMMNEILTGIRIIKFYAWE 403
                 34455555555556677888999999***************************************9876555555544333332.222220122222222111223334444444444444444444443333....3445666666666666555 PP

  == domain 2    score: 108.9 bits;  conditional E-value: 8.9e-34
   TIGR02204 354 kaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdl.reldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailk.dapiLLLdeatsaLdae.seqlvqqale.elmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakgg 566
                  +l+++  +++pG  va+vG  G+Gks +l+ +l   +   G+     v + r+ d +e    ++  +q + +     + ni +Grp   d   ++  +a+  ++ i  lp G +t++Gerg++LsGGqk r+++ara+   ++++LL+d+  sa+d++  e+l  +a++ e+ +grt +++ h +  + ++d ++v+++G i +qG +++Li +g 
  MMETSP1061-20121228|9206_1 629 ITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSK----VYIpRSDDEKEADGYISYCTQSPWVVNDTLKGNILFGRPYDEDR-YQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHvGEHLFSNAIAgEVGQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLIDQGV 840
                 67999**************************9998777666542....222256688899999***********************975443.3333344445678*********************************862678999*********98469999***974788***************************************9985 PP

  == domain 3    score: 208.7 bits;  conditional E-value: 5.2e-64
   TIGR02204   75 talrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqd..rladasayag..ealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlW.vGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerli....ellkaksdikaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydP.qsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakg 565 
                    +r  ++ +   + +  l   + + +l+   +ffd +  g vl r++ad   l   +  ++s  +   + ++Gal ++++++    ++++  +Pl  l   ++ ++ rk s e q   ++a++  +a+  ++l+ +  ++ay+ ++   ++ +++ +  ++a+   ++  +   a+ + ++ ga+ + +  + +  + +g + aG L+  + y++ v++ l    ++++ l+    ++er+     ++  + +d+   + p+  + +++geie+ + +++y + p  ++l++l++tv+ Ge++ + G +G+Gks l+  l r  +  ++G+i +dGvd+ e+  + lr++++++pqd+++f++ ++ n+       sdee+ +  k+ e  e i +lp+G d l+ e g ++s Gq+q + iar++l++ +iL++deat+++d e++ ++q+ + e  ++ t l iahrL t++++dri+vld+G+i e  t ++L++k 
  MMETSP1061-20121228|9206_1  981 LGFRGIFLAMHRLKASQKLHDGLTDAVLRAPISFFDVTPVGRVLNRFAADMDKLDLELTQTVSQGINTFFQVLGALGAILVATK--GTFIVPLIPLGFLY-HVIQKWFRKTSTELQRvtSIANSPIFADfsQTLSGTSSIRAYGVQDGFFKKCKNSFD-NMNASYLLVQLASYWLALRLDVMGGAIGMFIGaIAVGTLETGFIPAGWLGLALSYSIEVTSYLKYGVQMIARLEADMSSVERILyytdNIEPEAPDVIPEKDPEPGTWPLKGEIELSNASMRYRDGP--LVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIeKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDP-FATTSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKKE 1474
                  44555555554556667777788889999999********************************************99887653..46777778886654.56789*******99962268888888853389***********99877777666654.4777888888888888888887777777654313334567899**********************9****************97333345567788988899999999***************8888..9**********************************9985267***********************************9999973.45679*********************************************************************************************************************999875 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   1.1    0.0027      0.18      45     194 ..     247     395 ..     224     417 .. 0.76
   2 !  134.7   0.1   1.7e-41   1.1e-39     314     529 .]     603     821 ..     571     821 .. 0.81
   3 !  161.2   0.0   1.5e-49   9.5e-48     308     529 .]    1235    1456 ..    1203    1456 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0027
   TIGR02857  45 talaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddY..farylpqlvlavivplv.ilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglp 194
                  +++al +v ll +ll+  ++a+  ++++ v+  + + l +k++ +++a  + +++g+++ ++ + + +l+ +  fa +     l +++ l  i   v  a w+  + ++  +P+      ++G +  ++ +   + ++++     +++ g+ 
  MMETSP1061-20121228|9206_1 247 LQVVALGIVPLLVSLLQTRHNAIMCHCGVFVRTSVSTMLYRKALTVSAAGRAMTSTGQVVNMMSNDTMQLQRFlqFAGFTAIAPLQIVISLFlIYKQVGNATWVGVAYMVFLMPMNMKVFSMLGNMRRKVLKYSDSRVKMM----NEILTGIR 395
                 3478888999999999999999************************************************99955578888777777777651445789999999999999888855555555555444444333333333....34455555 PP

  == domain 2    score: 134.7 bits;  conditional E-value: 1.7e-41
   TIGR02857 314 ltaaassslelenvsvayegrk..pa..lkevsltvepgelvalvGaSGaGKstllklllgfvepteGa.ilvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrda.pllllDEPtahLDaeteaev.lealr.elaegrtvllvaHrlalaeladkivvl 529
                 +++++  +++++ vs    g +  p+  l+++  +++pg+lva+vG  G+GKs++l+++lg +e  +G+ + +  +     d+++    i++  Q+P+++++t++ ni ++r++ ++   +  +++++l++ ++ lp+g eteiGerg +LSgGq+ R++LAra+++ + +lll+D P +++D++  +++  +a++ e+ +grt +lv+H+ ++++++d ++v+
  MMETSP1061-20121228|9206_1 603 VDQNNLEAMSASSVSTEESGVDkvPVitLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSkVYIPRS----DDEKEADGYISYCTQSPWVVNDTLKGNILFGRPYDEDR-YQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSAKtRLLLMDDPLSAVDSHVGEHLfSNAIAgEVGQGRTRILVTHHVHVLARCDSVIVM 821
                 2222223666677777766665444422789999*****************************9887752444443....345556688************************98776.999*********************************************999**************9866651566662566*********************987 PP

  == domain 3    score: 161.2 bits;  conditional E-value: 1.5e-49
   TIGR02857  308 eaekapltaaass.......slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvep.teGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529 
                  e++ +               ++el+n s++y++   +lk++s+tv+ ge+++++G  G+GKs+l+ +l ++ e  ++G+i v+g+++ e+ ++++r++i+ +pQ P++f++t++ n+       s++e+ ++l+++++ e++++lp+gl+  + e+g++ S Gqrq l +Ar llr+ ++l++DE ta++D+et+a++++ +re ++ +tvl +aHrl+++ + d+i+vl
  MMETSP1061-20121228|9206_1 1235 EKDPE-------PgtwplkgEIELSNASMRYRDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIeKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFAT-TSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIMDSDRILVL 1456
                  22223.......133444569**********99999***********************************997257****************************************96654.56777***************************************************************************************************986 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   4.4   3.6e-05    0.0023     180     438 ..     249     505 ..     241     519 .. 0.79
   2 !  103.4   0.1   3.4e-32   2.2e-30     472     686 ..     630     843 ..     623     848 .. 0.88
   3 !  191.4   0.1   8.3e-59   5.3e-57     451     688 ..    1244    1481 ..     981    1486 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.6e-05
   TIGR01846 180 vlalallavavaevalsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarvr.eleqirefltgsaltvvldllfvvvflavmffyspkltlvvlvslviylllsvivs...pilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdildsP 438
                 v+al+++ +  +   l +  + +++h    +   +++ lyr  l++  +      +G++v  +  +  q++ fl  + +t +   l  v+ l  ++   ++ t+v +  +v+ + + + v    + +r++v  k++   +   ++ e +tgi+ ik  a e  f ++ +r+  + + a  k++ +  ++  +i l   +   +++++    + +  l+     +   l + +  P   +      f q ki+l+rl   l  P
  MMETSP1061-20121228|9206_1 249 VVALGIVPL--LVSLLQTRHNAIMCHCGVFVRTSVSTMLYRKALTVSAAGRAMTSTGQVVNMMSnDTMQLQRFLQFAGFTAIAP-LQIVISLFLIYKQVGNATWVGVAYMVFLMPMNMKVFsmlGNMRRKVL-KYS--DSRVKMMNEILTGIRIIKFYAWERPFGKEVDRVRGKEMDALTKMSYVVAVGFSIILLSTPIIQPIIVFLTYVNIQDQPLTAATAFTTVALFNLMRFPFAFMPMGLLQFIQSKISLKRLERYLALP 505
                 444443333..333455556789*************************************999626789******999997665.55666777889999999**9998888887776666511155666664.444..44567999*************************************************999**999999998888888888776666556666677777777776777888888888887776666 PP

  == domain 2    score: 103.4 bits;  conditional E-value: 3.4e-32
   TIGR01846 472 vlsnlsldikaGeviGivGpsGsGkst.ltkllqrlyvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralva.nPrilildeatsaldyeseavimrn.l.reickgrtviiiahrlstvraadrilvlekGkivesGkheellakeglya 686
                  l+n++ +ik+G ++ ivG+ GsGks  l+ +l  +      +v +   d    d +     ++   q   +++ +++ ni  ++P  +e++  ++      +d i  l+ G ete+ge+G +lsGGq+ r++lara+ + + r+l++d+  sa+d +  + + +n +  e+ +grt i ++h +  + ++d ++v+e+G i  +G++++l+ ++  +a
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSmLSAMLGEMESIGGSKVYIPRSD----DEKEADGYISYCTQSPWVVNDTLKGNILFGRPY-DEDRYQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSNaIaGEVGQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLIDQGVDFA 843
                 489**********************86368899999999999****9988....666667789***********************6.56666666666777999********************************986278*************987555555525359******************************************998887 PP

  == domain 3    score: 191.4 bits;  conditional E-value: 8.3e-59
   TIGR01846  451 elkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrly.vPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellak.eglyakl 688 
                   lkG+ie++n  +ry+ d p vl++ls+ +k+Ge iG+ G++GsGks l   l r+  + + G ++vdgvd++ +  a+lr++++++ q+ v+fs++ir n+     + s+e++  + k     + i +l++G +  v e G ++s Gqrq + +ar+l+ +P+il++deat+++d e++a+i+r +re   + tv++iahrl+t+ ++drilvl++G+i+e  + ++ll+k  g++  +
  MMETSP1061-20121228|9206_1 1244 PLKGEIELSNASMRYR-DGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISeIEKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFA-TTSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKKeSGHFKAM 1481
                  589************7.89******************************9988888527889***************************************98654.5678999999999999***********************************************************************************************************9945666655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   0.00031      0.02      87     343 ..     280     539 ..     265     549 .. 0.74
   2 !  113.2   0.1   4.1e-35   2.6e-33     306     529 ..     579     808 ..     562     809 .. 0.79
   3 !  173.3   0.0   2.7e-53   1.7e-51     107     530 .]    1018    1444 ..     990    1444 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00031
   TIGR02868  87 elRvrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraa...rsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrl.apvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldak.....vevaeasapaaeaaas...ekptlelrdlsvs 343
                 ++ + +Y++    ++a++a  ++G++++ +++D  +lq    R ++ ++  ++  l +v  ++l++ +++ +  ++++ +++++p+     +    +  + l+    +  + + ++l g   ++++    ++ ++v++   + + a  +++ + a+g ++ ll + +     + +    + d+ l a++a++ + L +L  f ++a +p  + q+ +++ +++R+e  l+ +     v+    +ap ae+a++   e+++  +++ s +
  MMETSP1061-20121228|9206_1 280 SVSTMLYRKALTVSAAGRAMTSTGQVVNMMSNDTMQLQ----RFLQFAGFTAIAPLQIVISLFLIYKQVGNATWVGVAYMVFLMPMNMKVFSmlgNMRRKVLKY-SDSRVKMMNEILTGIRIIKFYAWERPFGKEVDRVRGKEMDALTKMSYVVAVGFSIILLSTPIIQPIIVFLTYVNIQDQPLtAATAFTTVALFNLMRF-PFAFMPMGLLQFIQSKISLKRLERYLALPelnlyVQ---DEAPPAEDAPEilkEAMKQDVEASSLQ 539
                 4556778888889999999***************9998....777888888888889999999**********************8655444010444444443.44555678999****************************************9999999888877666666665556655514566777778888777.578899999999**********98777664432222...222222222222335555555555555 PP

  == domain 2    score: 113.2 bits;  conditional E-value: 4.1e-35
   TIGR02868 306 Rieevldakvevaeasapaaeaaasekptlel...rdlsv...sypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLl.adapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthr 529
                 R +  +     +a ++ + a++ ++++ +le+   + +s+   + ++ +   l++++ +++pG+ va+vG  G+GKs +l++++g +++  G+ +   + + s +e+e    +s++ q + + + t++ N++++rp  +++  ++++++  L+d ++ Lp G +t++ge+g  lSGG++ R+ lARa+  a+ ++ll+D P   +D +++e+l ++ +  ++ +grt +lvth+
  MMETSP1061-20121228|9206_1 579 RASRRASRRKSNASGTTADAADISVDQNNLEAmsaSSVSTeesGVDKVPViTLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKV---YIPRSDDEKEADGYISYCTQSPWVVNDTLKGNILFGRPY-DEDRYQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYsAKTRLLLMDDPLSAVDSHVGEHLFSNAIagEVGQGRTRILVTHH 808
                 333333333334444444444444444444330003333311044445556799**********************************9999877...44566689999**************************96.66778999******************************************85689*********************98875778899********9 PP

  == domain 3    score: 173.3 bits;  conditional E-value: 2.7e-53
   TIGR02868  107 lrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalar...lrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllal.lvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaas...ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldp.lkGevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530 
                     G +L+r++aD+d+l+  l  +++  +  +     + +++++++va   + ++ l+  +++  +++ +  +++ + ++    + s + a+  ++l+g++ ++++G+++ + +++++  +++ +a+    +++    al l ++G a+ + + +++v+ +  g + + +l +    ++ ++  l    + +++l++  ++ eRi   +d+  ++a  + p++ +++     k ++el++ s++y +++ vlk++s++++ Ge++ v G++G+GKs L+ +l+++ +  ++G++ +dgv++ ++ + ++r+ +s+++qd+ +F+ t+r Nl    ++ +deel+++L++v++++ +++Lp+Gld  + egg+ +S G+rq l +AR Ll + ++l++DE t+++D et + + +++++  ++ tv+ ++hrl
  MMETSP1061-20121228|9206_1 1018 TPVGRVLNRFAADMDKLDLELTQTVSQGINTF---FQVLGALGAILVATKGTFIVPLIPLGFLYHVIQKWFRKTSTELQRVtsiANSPIFADFSQTLSGTSSIRAYGVQDGFFKKCKNSFDNM-NASYLLVQLASYWLALRLDVMGGAIGMFIgAIAVGTLETGFIPAGWLGLALSYSIEVTSYLKYGVQMIARLEADMSSVERILYYTDNIEPEAPDVIPEKDPEPGtwpLKGEIELSNASMRYRDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIeKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDP-FATTSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRL 1444
                  56799************988888887766655...566778899999999999***************99999887655431115677899************************99876665.45566666666667888888888888888788888899999*99***99988888888888888888899999999*****977777755554444444444333334899**************************************************996268****************************************84.45789*******************************************************************************************96 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   1.0      0.93        60     199     496 ..     251     562 ..     156     567 .. 0.59
   2 !   90.6   0.2   2.4e-28   1.5e-26     495     704 ..     631     841 ..     615     846 .. 0.87
   3 !  203.7   0.0   1.4e-62   9.1e-61     213     709 ..     983    1482 ..     958    1483 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.93
   TIGR03796 199 gllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlnd.kvaell..sgqlattvldlvlvvfyalvmllydlvlaliaia.laainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeelee..............eeekaaeseek.........ekLsGkvelrnvtfgysaleaplie 496
                 +l ++ ll ++l++ ++a++ +  + + +++s+ + ++ l + +   a+ ++g++++ ++++  ++ ++l  +g  a + l++v+ +f +   +   +++++  ++ l  +n+ ++++  ++r  +  +    + k+++  ++g+++i   k  + e  f +++  +  k ++a  ++    a+   +  l t + + +i+ ++ + + +  lt  +  +  +l + +  p   +     ++ + +  l+rl+  l  p+ + + +              e         +          +  G++++ + +fg+   + p+ie
  MMETSP1061-20121228|9206_1 251 ALGIVPLLVSLLQTRHNAIMCHCGVFVRTSVSTMLYRKALTVSAAGRAMTSTGQVVNMMSNDTmQLQRFLqfAGFTAIAPLQIVISLFLIYKQVGNATWVGVAYMVfLMPMNMKVFSMLGNMRR-KVLKYSDSRVKMMNEILTGIRII---KFYAWERPFGKEVDRVRGKEMDALTKMSYVVAVGFSIILLSTPIIQPIIVFLTYVNIQDQPLTAATAFTTVALFNLMRFPFAFMPMGLLQFIQSKISLKRLERYLALPELNLYVQdeappaedapeilkE---------AmkqdveassLQSPGSITILDGSFGWVDPDGPVIE 562
                 4445556677777777777777777778888888888888888888888888888777665432555555112333333344444443333333344444433333033455555555555554.34566677777777777777765...5556666665555555555555555555554444444444455666666666666666666666665555555555555555553333333334455556665555554443333223333333333221.........02222222123444666666666666666666665 PP

  == domain 2    score: 90.6 bits;  conditional E-value: 2.4e-28
   TIGR03796 495 iedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvk.nPsiLilDEatsaLDaetEkaiden.lr...rRgctciivaHRLstiRdcdeiivlerGkvverGtHeellakega 704
                 +++++ ++kpG+ vA+vG+ GsGks +   + G  e+  G+ ++   pr++  ++     +++  q   + + t++ n+ l+ +   e++  + +   a++d+i+ +p+g e+e+ e g nlsGGq+ R+ +ARa+ + +  +L++D+  sa+D+++ +++ +n +      g t i+v+H +  +  cd +iv+e+G++ ++G++++l++++  
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKVYI--PRSDD-EKEADGYISYCTQSPWVVNDTLKGNI-LFGRPYDEDRYQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSNaIAgevGQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLIDQGVD 841
                 578999********************9999999999999987774..44443.3445778999***************9.8999999999999999999************************************975267799***********9977666551542224799***********************************998765 PP

  == domain 3    score: 203.7 bits;  conditional E-value: 1.4e-62
   TIGR03796  213 lqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsgqlattvldlvlvvfyalvmllydlvlalia..ialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlva.fqsllasflepveklvgl.vselqeleadlerldDvlenpvdeelee..eeekaaeseek.ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlye.pwsGeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR..gctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaYarLi 709 
                  ++ ++l+  + k + +    +   +lr P++ff+    g + +R  ++    +l   q +++ ++++  v+ al  +l  +  ++i+  i l ++  ++ ++  ++ ++++r     ++ + +   ++l+  ++++A g+++ ff++ +  + ++  +   +++a+ +l +    l  +  a+ + +g++ v  g+l  G + a +  l+ s++ +v++ ++  v+ +  lead++ ++ +l ++ + e e+     +++ +      L+G++el+n +  y    + +++d+s+++k G+++ + G  GsGks +   +  + e + +G+i++Dg++  ei  ++l++ ++++ qd v+f+ t+r nl  + +t ++e+l + +k   + +vi+++p+g++  +aegg+n+s Gqrq l iAR+L ++P iL++DEat+++D et+ +i++ +r+     t++ +aHRL ti d+d+i+vl+ G++ e  t ++ll+ ++g++++++
  MMETSP1061-20121228|9206_1  983 FRGIFLAMHRLKASQKLHDGLTDAVLRAPISFFDVTPVGRVLNRFAADMDKLDLELTQTVSQGINTFFQVLGALGAILVATKGTFIVplIPLGFLYHVIQKWFRKTSTELQRVTSIANSPIFADFSQTLSGTSSIRAYGVQDGFFKKCKNSFDNMNASYLLVQLASYWLAL---RLDVMGGAIGMFIGAIAV--GTLETGFIPAgWLGLALSYSIEVTSYLKYgVQMIARLEADMSSVERILYYTDNIEPEApdVIPEKDPEP-GtWPLKGEIELSNASMRYRDG-PLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFATT-SDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENfsDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKkESGHFKAMV 1482
                  46778888899999999999************************998765555555566666677766666655444444443433311455555666666666666666666667777888889999*********************9999888888888888888766...455566666667777665..8888888765478999*******998877257789*************998877777631222222333.2599**************765.7889************************987666666653679******************************************9755.899****************************************************************************964478*******************************9999884678888776 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.7   0.0   3.4e-29   2.2e-27     490     699 ..     631     839 ..     597     846 .. 0.87
   2 !  163.7   0.0   2.2e-50   1.4e-48     239     706 ..    1007    1482 ..     997    1484 .. 0.79

  Alignments for each domain:
  == domain 1    score: 93.7 bits;  conditional E-value: 3.4e-29
   TIGR01193 490 ledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalaralls.dskvlildestsnldlltekkivenllkl...kdktiifvahrlsvakksdkiivldeGkiieqGshkellken 699
                 l +i+ +ik  + +++vG  GsGks++   +++  ++  G     +      d++e   +i+y  q P++ + ++  n+l+g     ++++ + +++   ++ddi  lp G +te+ e + ++sgGqk r++lara+ s ++++l++d+  s +d  + +++ +n +     + +t i+v+h ++v  + d +iv+++G i  qG +++l+++ 
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKVYIPR---SDDEKEADGYISYCTQSPWVVNDTLKGNILFGRP--YDEDRYQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSNAIAGevgQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLIDQG 839
                 789***********************999999988877775433332...23678889***********************965..4556666666666789***********************************973578999**********9999999999964223689************************************986 PP

  == domain 2    score: 163.7 bits;  conditional E-value: 2.2e-50
   TIGR01193  239 lfelPmsffstrrvGeivsrft.daskiidalasti.lslfldlsilvivglvlvlqniklfllslvaiP.vyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvirek...lt...lGqlltfnall.syflnPleniinlqpklqaa.rvannrlnevylvdsefkekkkltelenlngdievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkff.qaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenll.klkdktiifvahrlsvakksdkiivldeGkiieqGshkellke.nGfyasli 706 
                  ++  P+sff    vG ++ rf+ d +k+   l+ t+   +   +++l ++g +lv      f++ l+ +  +y vi   f kt  +l++ +  an+ + +   + l+G ++i++ ++++  +kk ++ f ++  + l  + a +    l   l+++   + +++Ga+ v + +   +    lG  l++++ + sy+   ++ i  l + + +  r+ +   n     +    ek     +  l+g+ie+++ s +y  g  vl+d+s+++k  eki + G +GsGks+l+  l +    +++G i ++g+++ +i   +lrq i+ +Pq+P++fs +i  nl  +    +s+ee++++++ +e+ + i +lp+G++  ++e + + s Gq+q l++ar+ll + k+l++de+t+++d  t+  i   +  +++d t++ +ahrl+    sd+i+vld+G+i e  + ++llk+  G+++ ++
  MMETSP1061-20121228|9206_1 1007 VLRAPISFFDVTPVGRVLNRFAaDMDKLDLELTQTVsQGINTFFQVLGALGAILVATK-GTFIVPLIPLGfLYHVIQKWFRKTSTELQRVTSIANSPIFADFSQTLSGTSSIRAYGVQDGFFKKCKNSFDNMNASYLLVQLASYWLA-L--RLDVMGGAIGMFIGAIAVGTLEtgfIPagwLGLALSYSIEVtSYLKYGVQMIARLEADMSSVeRILYYTDNIEPEAPDVIPEKDPEPGTWPLKGEIELSNASMRYRDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISeIEKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNL--DPFATTSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIReNFSDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKKeSGHFKAMV 1482
                  7889*****************7356655334444431234444567788999998765.569999998862455555555555555555555555555555556689**********************998777777777666543.3..344444445555666665443311143223677899*9876257777899999999998775245554444333333334444445678889*********************************************99999888834789*************************************997..6777899*******************************************************************999887665533799*************************************975269998876 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   3.0      0.12         8      48     161 ..     247     362 ..     224     507 .. 0.67
   2 !  115.3   0.1   9.5e-36   6.1e-34     322     541 ..     616     836 ..     587     838 .. 0.83
   3 !  135.7   0.0     6e-42   3.8e-40     314     543 ..    1246    1473 ..    1236    1474 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.12
   TIGR01842  48 ltvlvvvly.lvlglleavRskvlvrigekldkalnkkifkaaieatl.erkkkeslqal....rDldqlrqFltgtgliaffDlPwlpiyllvvfllhpylGllalvgavvlvalalln 161
                 l v++++++ l+++ll++  + ++ + g  + +++++ +++ a++ ++  r  +++ q++    +D  ql++Fl   g +a+  l  ++     +fl+   +G ++ vg+  +v l  +n
  MMETSP1061-20121228|9206_1 247 LQVVALGIVpLLVSLLQTRHNAIMCHCGVFVRTSVSTMLYRKALTVSAaGRAMTSTGQVVnmmsNDTMQLQRFLQFAGFTAIAPLQIVI----SLFLIYKQVGNATWVGVAYMVFLMPMN 362
                 66777777724556777777889999999999999999999888877755555555665522236899***********9996544433....234444444444444443333333333 PP

  == domain 2    score: 115.3 bits;  conditional E-value: 9.5e-36
   TIGR01842 322 vslvppeekk...ktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGs.vrlDgadlkqwdretlGksiGYlPqdveLfeGtvaenia..RfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygd.PklvvLDePnanLDee.GeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevl 541
                 vs+ +++  k    tl++i+  +k+G+ +ai+G+ gsGkss+   ++G ++   Gs v +   d    d+++    i Y  q   +++ t++ ni   R  ++   + ++ a       + i+ lp G +teige+G +LsgGq+ R++LaRa+y +  +l+++D+P + +D++ Ge  + +a+     +++t +++th++++l+  d ++v+++G++k+ G+ ++++
  MMETSP1061-20121228|9206_1 616 VSTEESGVDKvpvITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSkVYIPRSD----DEKEADGYISYCTQSPWVVNDTLKGNILfgRPYDEDRYQTIMSAC---ALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSAkTRLLLMDDPLSAVDSHvGEHLFSNAIAGEVGQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLI 836
                 444444444445469**********************************999999624443333....45556678*******************522444444455555555...456789*********************************8526899**********844***********************************************998876 PP

  == domain 3    score: 135.7 bits;  conditional E-value: 6e-42
   TIGR01842  314 egelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwl.pasGsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevlkk 543 
                  +ge+e++n s++  ++   +lk++sf++k Ge +++ G  gsGkssL+  l  + + ++ Gs+ +Dg+d+ +  +  l ++i  +Pqd  +f+ t+  n+  f   + +e++ +  k  ++ e+i++lpkG d  ++egG++ s Gqrq + +aR l ++Pk++v+De  a++D+e ++ + + +       +tv++i+hr + +   d+ilvl+dG+++++ + +++lkk
  MMETSP1061-20121228|9206_1 1246 KGEIELSNASMRYRDGP-LVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFAT-TSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIR-ENFSDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKK 1473
                  57777778777776665.89*****************************99998762678********************************************9.9999*******************************************************************988877665.57899*****************************9999998875 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   1.2e-20   7.5e-19     351     576 ..     631     855 ..     621     864 .. 0.83
   2 !  159.9   0.0     3e-49     2e-47     159     570 ..    1068    1485 ..    1011    1493 .. 0.87

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 1.2e-20
   TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlinllqrvyd.pksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailkn.apilvldeatsaldvet.earvkdaida.lrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllrasglliee 576
                 +r+++ ++k g  vaivg  g+gk++++  +    +     ++ i   d    + +     i+   q   ++n +++ ni +gr    d        a a +d i     g +t +gerg +lsgg++ r+++ara+    + +l++d+  sa+d    e    +ai   + + rt ++++h +  +   d v+ +++g +  +g +++li+++  fa  +  s +   +
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMEsIGGSKVYIPRSD----DEKEADGYISYCTQSPWVVNDTLKGNILFGRPYDED-RYQTIMSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMYSAkTRLLLMDDPLSAVDSHVgEHLFSNAIAGeVGQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLIDQGVDFAGAVDVSKIQKSD 855
                 579999******************9988755544440444455555544....4455567799999******************76433.33444556677899********************************98751678999********98636778899974399*********************************************9988888776655 PP

  == domain 2    score: 159.9 bits;  conditional E-value: 3e-49
   TIGR01192  159 slvlvvlgivyvliaklvmsrtkegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypv.ldwwalasglnriastislvi.ilvigtv...lvkkgelsvg.....eviafigfanlligrldqlkafvtqivearakledffdledsvkere.epadarelknvkgavefrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydp.ksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqk.dgrfakllras 570 
                   + l+ lg +y +i k+  + + e q         +f+  s+++s  s +++y   +   k+ k+  +++ ++   v l  + la  l+ +  +i + i  + +gt+   ++  g l++      ev +++ +   +i rl+   + v++i+     +e   +  d + e++ ep+       +kg++e+ + s+ + +    ++d+sf++k g+ + + g tg+gk++l+  l r+ +  k g i +dgvdi  +   +lr+ i+ + qd  ++  +ir n+     +++dee+ +  k     + i +  kg d lv e g+++s g+rq l iar++l+   ilv+deat+++d et+a ++  i     + t + iahrl t+ ++d +l ld+g + e  + d+l +k  g+f++++ +s
  MMETSP1061-20121228|9206_1 1068 IVPLIPLGFLYHVIQKWFRKTSTELQRVTSIANSPIFADFSQTLSGTSSIRAYGVQDGFFKKCKNSFDNMNASYLLVqLASYWLALRLDVMGGAIGMFIgAIAVGTLetgFIPAGWLGLAlsysiEVTSYLKYGVQMIARLEADMSSVERILYYTDNIEP--EAPDVIPEKDpEPGTW----PLKGEIELSNASMRYRDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIeKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPF-ATTSDEELWDVLKKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKKeSGHFKAMVEKS 1485
                  445899************9999999999999999********************999999999887777655444333666779999****9999997633445544333999999886544555999**************999999999999888885..5667777665366654....579****************************************************996267***************************************9965.5679*********************************************************************************************************************98776269***999876 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.0   1.7e-19   1.1e-17      17     236 ..     630     838 ..     624     842 .. 0.85
   2 !   81.9   0.0   1.5e-25   9.9e-24       2     233 ..    1249    1470 ..    1248    1478 .. 0.87

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 1.7e-19
   TIGR02315  17 alknvnleikkGelvaviGlsGaGkstllrsi.nrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaq.qpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasseldde 236
                 +l+n+ ++ik+G lva++G  G+Gks +l ++  ++++i  +++++        +  + +++   i++  q   ++ + t   n+L gr   ++  +++++    ed    l + ++ ++     +r  +LsGGq+ Rv++aRa+   +++l+l D+P++++D +  +++++        +g t i+  H+v++  + +d ++ +++g+i ++g  ++l d+
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMlGEMESIGGSKVYIP-------RSDDEKEADGYISYCTQSPWVV-NDTLKGNILFGRPYDEDRYQTIMSACALEDDIAVLPAGDETEIG----ERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLAR-CDSVIVMENGTIKHQGRYQDLIDQ 838
                 699*************************9875145555555555554.......4556677788899999987666.567889*************************9999999998886....58899**************9852789********************998888888999999999**998765.9*************9999888776 PP

  == domain 2    score: 81.9 bits;  conditional E-value: 1.5e-25
   TIGR02315    2 levenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlve.issgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgassel 233 
                  +e++n s +y +g  +lk++++++k Ge ++v G+ G+Gks l+ ++ r+ e +++gsi+++g +++++  ++l   r++i++i q+  + +  + ++  L ++ ++++  ++l+ ++++ +  + ++ L + gl++l a+  ++ s Gq+q + iaR+l+++pk+++ DE +as+D+++  ++ +++++    ++ tv+   H+++  +  +dri+ l +g+i   +++++l
  MMETSP1061-20121228|9206_1 1249 IELSNASMRYRDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGVDIGEIGTAAL---RQNISIIPQDPVMFS--NTIRYNLDPFATTSD--EELWDVLKKVEMGEVIAQLPK-GLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENF--SDATVLTIAHRLNTIMD-SDRILVLDDGHIAELDTPDNL 1470
                  67889999********************************************44679**********9988765...689******976554..456666777654443..5789999************98.9************************************************9999999744..567888888***99987.8**********9877766665 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.0   5.1e-17   3.3e-15      16     232 ..     630     837 ..     626     843 .. 0.84
   2 !   89.1   0.0   9.8e-28   6.3e-26       3     234 ..    1250    1474 ..    1248    1480 .. 0.89

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 5.1e-17
   TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkk.ldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaral.avePevlLlDePtsaLDpiateki..eeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqife 232
                 +l++++ +ik  +++a++G  G+Gks++l ++    + +            g+++y  +  d++e    +    q p   + ++  n+ +g    + + ++ +++ + e    a l    ++++ + +++LsGGq+ r+++ara+ + +  +lL+D+P sa+D+   e++  +++  e+ +  t ++vth+++  ar+ d ++++ +G++  +g+ ++++ 
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESI-----------GGSKVYIPRsDDEKEADGYISYCTQSPWVVNDTLKGNILFGRPYDEDRYQTIMSACALED-DIAVLPAGDETEIGERGINLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLfsNAIAGEVGQGRTRILVTHHVHVLARC-DSVIVMENGTIKHQGRYQDLID 837
                 689*************************99874333333...........3444444330456778889**********************9999988887777766544.567788888899*********************9467899***************9998434567799999**************96.99**********9999888765 PP

  == domain 2    score: 89.1 bits;  conditional E-value: 9.8e-28
   TIGR00972    3 evknlklfygeke.alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekp 234 
                  e +n ++ y +   +lkd+++ +k  + +++ G +G+Gks+l+ +l r+++       +G+++++g di +  + +++lr+++ ++ q p  f+ +i  n+     +++ +  ++l + ve     a l + + d + + + + s Gq+q lciar+l  +P++l++De t+++D ++ ++i+ +i+e  ++ t++ + h ++  +  sd++ ++ +G++ e ++++++++k 
  MMETSP1061-20121228|9206_1 1250 ELSNASMRYRDGPlVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIE----KDGSIFVDGVDIGE--IGTAALRQNISIIPQDPVMFSNTIRYNLDPFATTSDEELWDVL-KKVEMGEVIAQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIM-DSDRILVLDDGHIAELDTPDNLLKKE 1474
                  6678888888765499********************************98765....79**********76..6899********************9999866666664444444.556667777999*************************************************************************8765.69******************999875 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   7.2e-17   4.6e-15      15     224 ..     630     840 ..     624     846 .. 0.82
   2 !   79.2   0.0     1e-24   6.6e-23       3     218 ..    1251    1469 ..    1249    1478 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 7.2e-17
   TIGR03410  15 vlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkip.....eeiyelFPvlkeml.kRrgGdLsGGqqqqlaiaRaLvt.ePklllLDePteGiqPsiikeiek.vikelakekdlaillveqvldfaleladrylvlerGevvaegekeeldeekv 224
                  lr+++ +++ g++va++G  g Gk+++l a++g ++   G+       i +++ e+ ++  i+y  q   ++ + t + n+  g    +++ ++i+     e+  ++ P+ +e +   rg +LsGGq+  +++aRa+ + + +lll+D+P   +   + +++ + +i      ++ + +lv ++++   +  d+++v+e+G++ ++g+ ++l ++ v
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKV----YIPRSDDEKEADGYISYCTQSPWVVND-TLKGNILFGRPYDEDRYQTIMsacalEDDIAVLPAGDETEiGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSnAIAGEV-GQGRTRILVTHHVHVLAR-CDSVIVMENGTIKHQGRYQDLIDQGV 840
                 5899*********************************9999865....58889999999999******9988876.9*********999999666652222245567889888765267899***************9852789***************9998550555544.456666677777765554.8****************999887766 PP

  == domain 2    score: 79.2 bits;  conditional E-value: 1e-24
   TIGR03410    3 venlevaYge.sevlrdvslevekgevvavlGrngvGkttllkalvgllkv.ksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.....ekkipeeiyelFPv.lkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekee 218 
                  ++n ++ Y +   vl+d+s++v+ ge + v Gr g Gk++l+ al  + ++ k+G+i ++g di +  +    ++ i+ +pq   +f++ t++ nl   +++++++     +k  + e+ +  P  l+++ +  g + s Gq+q l iaR+L+ +Pk+l++De t  i     + i+++i+e  + +d ++l + + l+  ++ +dr+lvl+ G++ + ++ ++
  MMETSP1061-20121228|9206_1 1251 LSNASMRYRDgPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIeKDGSIFVDGVDIGEIGTA-ALRQNISIIPQDPVMFSN-TIRYNLDPFATTSDEElwdvlKKVEMGEVIAQLPKgLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRE--NFSDATVLTIAHRLNTIMD-SDRILVLDDGHIAELDTPDN 1469
                  56666667541579********************************99886278**********998765.67999*******999987.9*****99888888877777533334566666664399999999999*****************************9999999999999986..456899**********999.9**********998776665 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.0   2.6e-18   1.7e-16      15     221 ..     630     838 ..     625     847 .. 0.80
   2 !   67.4   0.0   4.2e-21   2.7e-19       1     226 [.    1249    1478 ..    1249    1483 .. 0.83

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 2.6e-18
   TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaG.lekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir..kkdkakikakveellelv...qleklgdrypsqlsGGqrqrvalaral.avepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyde 221
                 +l ++  ++k Gslva++G  GsGks++l ++ G +e     ++++   d    k  d  i +  q   + +  t++ ni fG      + ++      +e+ + ++   + +++g+r   +lsGGq+ rv+lara+ + + ++ll+d+p++a+d++v ++l +           t ++vth     l   d ++v+e+G i+  g  +++ d+
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGeMESIGGSKVYIPRSDD--EKEADGYISYCTQSPWVVND-TLKGNILFGRPYDedRYQTIMSACALEDDIAVLpagDETEIGERG-INLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHV-HVLARCDSVIVMENGTIKHQGRYQDLIDQ 838
                 6889999**********************9988835555555777777765..5567999******9877765.9********887733444444555566666665222456777775.57**************8457899*******************88765555555689******86.578899**************999999886 PP

  == domain 2    score: 67.4 bits;  conditional E-value: 4.2e-21
   TIGR00968    1 ilianvskrfGdf.qalddvdlevktGslvallGpsGsGkstllrviaGlek.pdsGrilleGrdvtrv..kvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvq....leklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevydepataf 226 
                  i+++n+s r+ d   +l+d++++vk G+ +++ G +GsGks+l+ ++  + + ++ G i+++G d+ ++   + +++i ++ q+  +f   t+r n+    +   ++   + +kve    + q    l++l     +++s Gqrq + +ar+l  +p++l++de  +++d +    +++ +r+   +  v t  ++h  +  ++ +dri vl++G+i ++++++++ ++ + +f
  MMETSP1061-20121228|9206_1 1249 IELSNASMRYRDGpLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGVDIGEIgtAALRQNISIIPQDPVMFSN-TIRYNLDPFATTSDEELWDVLKKVEMGEVIAQlpkgLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLT--IAHRLNTIMD-SDRILVLDDGHIAELDTPDNLLKKESGHF 1478
                  56788888887752689**************************9988877552678**********99822456789***********86.99*9*987777777777788888875555555111256677777899****************************************99999887765544..6788888887.8*******************999877766 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   7.1e-19   4.5e-17      14     205 ..     631     820 ..     623     821 .. 0.82
   2 !   64.2   0.0   3.8e-20   2.5e-18       7     205 ..    1257    1455 ..    1251    1456 .. 0.80

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 7.1e-19
   TIGR03608  14 lkklslkiekGelvaivGesGsGKstlLn.ilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskkekekkkk..evlekvgl..ekklkkkiyelsgGekqRvalarillk.eselilADEPtgsLDkknreevle.llkelkeegktiiivtHdpevaekadrvie 205
                 l+++  +i+ G+lvaivG+ GsGKs +L  +lg +e+    kv++  ++    ++k+        ++y  q   ++ n+t++ n+  +  + +   ++ +++    + +  +    e+++ ++  +lsgG+k Rv+lar++   +++l+l D+P +++D++  e++++  +     +g+t i+vtH  +v  ++d vi 
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSaMLGEMESIGGSKVYIPRSD----DEKE----ADGYISYCTQSPWVV-NDTLKGNILFGRPYDEDRYQTIMSACAleDDIAVLPAgdETEIGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSnAIAGEVGQGRTRILVTHHVHVLARCDSVIV 820
                 789999********************995499************99888....3333....34679*****97766.679********99998877766655431133333322325666677789***************862679***************9999852788899**********************96 PP

  == domain 2    score: 64.2 bits;  conditional E-value: 3.8e-20
   TIGR03608    7 kfkdk.eilkklslkiekGelvaivGesGsGKstlLnilgllek.kdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkkskk..ekekkkkevlekv..glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvie 205 
                  +++d   +lk+ls++++ Ge + ++G+ GsGKs l+  l ++ + +++g+++++g +   + +   +  lr++++ + q+  +  ++t+++nl+   +++ ++     k+ ++ ev+ ++  gl+    +   ++s G++q + +ar ll+++++++ DE t+s+D+++ +++ ++++e + ++ t++ + H  +    +dr++ 
  MMETSP1061-20121228|9206_1 1257 RYRDGpLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGVD---IGEIG-TAALRQNISIIPQDPVMF-SNTIRYNLDPFATTSDEELWdvLKKVEMGEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRE-NFSDATVLTIAHRLNTIMDSDRILV 1455
                  55543379**************************99877776551567999****99...55554.4567999*******8766.67******9655554444431145556778888876689999999999***********************************99988877766.5667889999999999999999875 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0068      0.43      16      49 ..     630     663 ..     625     688 .. 0.79
   2 !   34.4   0.2   4.9e-11   3.1e-09     129     222 ..     744     838 ..     728     848 .. 0.89
   3 !   79.9   0.0   6.2e-25     4e-23       4     224 ..    1251    1475 ..    1248    1484 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0068
   TIGR03864  16 alddvsltvakgefvaLLGpnGaGkstLfslltr 49 
                 +l++++ ++++g++va++G  G+Gks ++s + +
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLG 663
                 5889999*******************98875544 PP

  == domain 2    score: 34.4 bits;  conditional E-value: 4.9e-11
   TIGR03864 129 kvreLnGGhrrrveiarallh.ePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaae 222
                 +  +L+GG++ rv +ara+   + +lLL+D++   +D +  ++l ++  +    +g + +  th v+ +++ d+++v+++G ++ qG+ ++l  +
  MMETSP1061-20121228|9206_1 744 RGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLARCDSVIVMENGTIKHQGRYQDLIDQ 838
                 5568**************9862689*****************99988888777888888889***************************999764 PP

  == domain 3    score: 79.9 bits;  conditional E-value: 6.2e-25
   TIGR03864    4 veglsfaygkr.ralddvsltvakgefvaLLGpnGaGkstLfslltrLyea.kegeikvaGldlrrapkealar.lGvvfqqstlDldlsveqnlryhaaLhG..lsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaead 224 
                  +++ s++y +   +l+d+s+tv+ ge + + G  G+Gks L+  l r+ e  k+g+i v G+d+ +  ++al++ + ++ q++ +    +++ nl  +a+     l     + ++ e++a+l  gl +  +e  ++ + G+r+ + iar+ll +Pk+L++Deat+ +D e+ a++++++re    ++ +vL   h ++ + ++dr++vl+ G+++   ++++l ++++
  MMETSP1061-20121228|9206_1 1251 LSNASMRYRDGpLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIeKDGSIFVDGVDIGEIGTAALRQnISIIPQDPVM-FSNTIRYNLDPFATTSDeeLWDVLKKVEMGEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENF--SDATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKKES 1475
                  556666665541589********************************9985268******************8637777777766.6679*********8765115555555566677777654789999999999*********************************************99..67899*************************9999999988765 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.1   7.2e-20   4.6e-18      19     245 ..     630     853 ..     616     922 .. 0.77
   2 !   58.3   0.0   2.5e-18   1.6e-16      18     231 ..    1263    1479 ..    1247    1484 .. 0.83

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 7.2e-20
   TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaG.LekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelvglsgsee....kyPgqlsGGqqqrvaLaralals.PglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqPatkfvadfvGevnllkaev 245
                 +l++i  ++k g lv+++G  G Gk+++L ++ G +e+    ++++   d  + +     y    qs     n t++ ni +G    +   + + +  +   ++  l+  +e         lsGGq+ rv+Lara+  +   lLL+D+Plsa+D++v e+L ++  +     g t i+vth     l+ +D ++vm++g+i+  g  +++ +q       df G v++ k ++
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGeMESIGGSKVYIPRSDDEKEADGYISYC--TQSP-WVVNDTLKGNILFGRPYDEDRYQTIMSACALEDDIAVLPAGDEteigERGINLSGGQKARVSLARAMYSAkTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHV-HVLARCDSVIVMENGTIKHQGRYQDLIDQGV-----DFAGAVDVSKIQK 853
                 6899*************************999883555555577877777776666666664..4664.45689*********87777555666665555555555654444111134568***************76526899******************998888888899*******87.58*******************9998887753.....5555555544444 PP

  == domain 2    score: 58.3 bits;  conditional E-value: 2.5e-18
   TIGR03265   18 talkdislsvkkgelvclLGPsGCGkttLLriiaGL.ekqdaGaillggrditrlppq..krdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelv....glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqPatkfv 231 
                   +lkd+s++vk ge + + G  G Gk++L+ ++  + e ++ G+i+++g di ++ ++  +++  i+ q  ++f n t++ n++   +++  +  +v ++ve+   +     gl++        +s Gq+q + +ar+l  +P++L++De  +++D    + +++ +++      v t  ++h  +  ++ +Dri v+++g+i  + tP ++ ++ + +f 
  MMETSP1061-20121228|9206_1 1263 LVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRIsEIEKDGSIFVDGVDIGEIGTAalRQNISIIPQDPVMFSN-TIRYNLDPFATTSDEELWDVLKKVEMGEVIAqlpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLT--IAHRLN-TIMDSDRILVLDDGHIAELDTPDNLLKKESGHFK 1479
                  579**************************9888776367889***********98654226799**********99.9999*998888888899999999975433332234667777777889***************************************999998766655544..567665.56679*******************9998887775 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   5.9e-05    0.0038      16      54 ..     629     667 ..     624     687 .. 0.84
   2 !   26.5   0.0   1.5e-08   9.4e-07     136     205 ..     746     817 ..     736     825 .. 0.84
   3 !   79.4   0.0   9.7e-25   6.2e-23       2     213 ..    1249    1459 ..    1248    1460 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 5.9e-05
   TIGR02673  16 eaLkdvslkiekgeflfltGasGaGkttllklllgaekp 54 
                  +L++++ +i++g+++ ++G  G+Gk+++l  +lg  + 
  MMETSP1061-20121228|9206_1 629 ITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMES 667
                 579***************************877765544 PP

  == domain 2    score: 26.5 bits;  conditional E-value: 1.5e-08
   TIGR02673 136 eelsgGeqqRvaiaRaivn.kPelllaDePtGnlDdelserild.llkelnkrGttvivathdeelvervkk 205
                  +lsgG + Rv++aRa+ + k +lll D+P   +D+++ e++++  +     +G t i++th  ++++r + 
  MMETSP1061-20121228|9206_1 746 INLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSnAIAGEVGQGRTRILVTHHVHVLARCDS 817
                 68***************862678******************985367788899************9998764 PP

  == domain 3    score: 79.4 bits;  conditional E-value: 9.7e-25
   TIGR02673    2 ielekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllg.aekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrve..evlelv..gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelekg 213 
                  iel++ s++y  g  +Lkd+s++++ ge + + G+ G+Gk++l+  l+   e  + G++ v+g d+ ++    +++lR++i+++ qD  +++  t+  n+    + + ++  ++ k+ve  ev+ ++  gl+d + +  e++s+G +q   iaR++++kP++l+ De t  +D+e+ + i ++++e   + +tv+  +h  + +   + r+l l++g
  MMETSP1061-20121228|9206_1 1249 IELSNASMRYRDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRiSEIEKDGSIFVDGVDIGEIG---TAALRQNISIIPQDPVMFS-NTIRYNLDPFATTSDEELWDVLKKVEmgEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIREN-FSDATVLTIAHRLNTIMD-SDRILVLDDG 1459
                  7999***************************************9777661567789*********98875...789***********87766.5777788766666666667777777533788887779****************************************************99885.556788888898876654.4677777776 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0014     0.089      21      52 ..     631     662 ..     621     684 .. 0.83
   2 !   46.1   0.0   1.4e-14   9.2e-13     134     219 ..     740     826 ..     701     827 .. 0.87
   3 !   64.8   0.0   2.8e-20   1.8e-18      20     219 ..    1264    1461 ..    1249    1462 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0014
   TIGR02982  21 lfdinleiepgeiviltGpsGsGkttlltlig 52 
                 l +i  +i+pg +v + G+ GsGk  +l+ + 
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAML 662
                 789999*********************98653 PP

  == domain 2    score: 46.1 bits;  conditional E-value: 1.4e-14
   TIGR02982 134 rldykpedlsgGqkqrvaiaralv.arPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                 ++  +  +lsgGqk rv++ara+  a+ +l+l d+P +a+d++ g+++ +        qg t +lvth   +l  +d ++ me+G++
  MMETSP1061-20121228|9206_1 740 EIGERGINLSGGQKARVSLARAMYsAKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLARCDSVIVMENGTI 826
                 66677789**************9626899******************99988888889***************************98 PP

  == domain 3    score: 64.8 bits;  conditional E-value: 2.8e-20
   TIGR02982   20 vlfdinleiepgeiviltGpsGsGkttllt.ligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvr.malelkeklsakeakakaeelleav..gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd.nrildvadrivkmedGkl 219 
                  vl+d++++++ ge + + G +GsGk  l+  l       ++G++ v g ++ ++      ++r++i +i q   ++ s t + n+  +a+   e+l    +k +  e++ ++  gl++ +    e++s Gq+q + iar+l  +Pk+++ de ta++d+++  ++  ++++      +t+l ++h  n i+d +dri+ ++dG++
  MMETSP1061-20121228|9206_1 1264 VLKDLSFTVKGGEKIGVCGRTGSGKSSLMIaLFRISEIEKDGSIFVDGVDIGEIGT---AALRQNISIIPQDPVMF-SNTIRYNLDpFATTSDEELWDVLKKVEMGEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFS--DATVLTIAHRlNTIMD-SDRILVLDDGHI 1461
                  9*************************987514444455689*****9999887765...6789******9998766.568899987356666666666666777777777765599************************************************9999999765..5799999998355666.8*********98 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.1     0.013      0.86      18      47 ..     636     665 ..     630     678 .. 0.80
   2 !   44.3   0.0   4.4e-14   2.9e-12     130     228 ..     746     843 ..     704     866 .. 0.84
   3 !   68.3   0.0   2.4e-21   1.5e-19       8     228 ..    1259    1479 ..    1253    1495 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.013
   TIGR02142  18 lelpgkgvtalFGrsGsGktslirliaGLt 47 
                 ++++   ++a+ G+ GsGk+s++ ++ G +
  MMETSP1061-20121228|9206_1 636 THIKPGSLVAIVGSVGSGKSSMLSAMLGEM 665
                 55555589****************998855 PP

  == domain 2    score: 44.3 bits;  conditional E-value: 4.4e-14
   TIGR02142 130 gkLsGGekqRvaigRAlLs.sPeLLlmDePLaaLDekrkkeilPyLerlsaelk..iPilyvsHsldevarladrvvvledGrvkaagkleevlaskdlsll 228
                  +LsGG k Rv+++RA+ s + +LLlmD+PL+a+D++  ++++   + ++ e+      ++v H+++ +ar  d v+v+e+G +k +g  ++++ +  ++++
  MMETSP1061-20121228|9206_1 746 INLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFS--NAIAGEVGqgRTRILVTHHVHVLAR-CDSVIVMENGTIKHQGRYQDLIDQG-VDFA 843
                 57***************973689****************99965..666666651156899****997777.7*******************99876.4444 PP

  == domain 3    score: 68.3 bits;  conditional E-value: 2.4e-21
   TIGR02142    8 rlgdfeL.dvdlelpgkgvtalFGrsGsGktslirliaGLtrp.degeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee....rriseekvielL..giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskdlsll 228 
                  r g   L d++++++g + +++ Gr GsGk+sl+ ++  +    ++g i +dg  +     +i +++ + +++++ q+  +F+  ++r nL    ++++ e     +++++ +vi+ L  g++ L+    ++ s G +q   i+R lL +P++L+mDe  a++D++  + i   +++  +  +  +l ++H l+ +   +dr++vl+dG+++   +++++l++++ ++ 
  MMETSP1061-20121228|9206_1 1259 RDGPLVLkDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIeKDGSIFVDGVDIG----EIGTAALRQNISIIPQDPVMFSN-TIRYNLDPFATTSDEELwdvlKKVEMGEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFS--DATVLTIAHRLNTIMD-SDRILVLDDGHIAELDTPDNLLKKESGHFK 1479
                  55555553799*********************9866555444313466666665443....5888999**************96.8*****988888887642233789999999998779************************************************99876654333..467899******9987.8*******************9987654433 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.1     0.014      0.93       9      44 ..     631     666 ..     625     686 .. 0.76
   2 !   35.6   0.0   1.8e-11   1.2e-09     129     240 ..     747     853 ..     741     911 .. 0.81
   3 !   80.5   0.3   4.2e-25   2.7e-23       9     233 ..    1265    1485 ..    1260    1496 .] 0.81

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.014
   TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrlie 44 
                 ++++  +i+ G ++ i+G  GsGks+++  +   +e
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEME 666
                 6789999*******************9865444444 PP

  == domain 2    score: 35.6 bits;  conditional E-value: 1.8e-11
   TIGR01186 129 elsGGmqqrvGlaral.aaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaneyveefiekvdlsqvld 240
                 +lsGG++ rv lara+ +a+  lllmd+++sa+d  + ++l  + +  +    +t +++th +   l  +d ++++++G i   G  ++++    +     f + vd+s++++
  MMETSP1061-20121228|9206_1 747 NLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHV-LARCDSVIVMENGTIKHQGRYQDLIDQGVD-----FAGAVDVSKIQK 853
                 69*************8468899****************************************975.56689**********999999988765543.....455555555544 PP

  == domain 3    score: 80.5 bits;  conditional E-value: 4.2e-25
   TIGR01186    9 vndvdleieeGeiiviiGlsGsGkstlvrllnrlieP.taGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnis...lglellkideqerkekalealklv..dleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaneyveefiekv 233 
                  ++d+++ ++ Ge i + G +GsGks+l+  l r+ e    G i++dG+di ei  a l    r+ i+++ q+  +f   ti  n++    + +   +d  ++ e   e++ ++  +l++ + +  +++s G++q + +ar+l  +P++l+mdea +++d  +   +q  + +  +  + t++ i+h l+  +  +dri +l +G+i  + tPd++l+  + ++ + ++ek 
  MMETSP1061-20121228|9206_1 1265 LKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIeKDGSIFVDGVDIGEIGTAAL----RQNISIIPQDPVMF-SNTIRYNLDpfaTTSDEELWDVLKKVEMG-EVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRE--NFSDATVLTIAHRLNTIMD-SDRILVLDDGHIAELDTPDNLLKKESGHF-KAMVEKS 1485
                  7999******************************996257******************....9****999997766.57888886521123333334444444433.444333237899999999999***************************************98775..456789********97765.9**********************998877.4455555 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.4e-06   0.00015      18      57 ..     630     669 ..     614     691 .. 0.84
   2 !   22.1   0.1   3.6e-07   2.3e-05     136     213 ..     745     823 ..     730     826 .. 0.83
   3 !   74.2   0.0   4.1e-23   2.6e-21       2     215 ..    1249    1460 ..    1248    1461 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.4e-06
   TIGR00960  18 aldnvtvkiekGelvflvGhsGaGkstllklilgiekpsa 57 
                 +l n+t +i+ G+lv +vG  G+Gks++l  +lg  ++  
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIG 669
                 699**************************98887655444 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 3.6e-07
   TIGR00960 136 PvqlsgGeqqrvaiaravvn.kPallladePtgnlddelsrdil.elleevnraGttvlvathdenlveskrkrvltlsk 213
                  ++lsgG++ rv++ara+ + k  lll d+P + +d+++ ++++ + +     +G t ++ th  +++++    v+++++
  MMETSP1061-20121228|9206_1 745 GINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFsNAIAGEVGQGRTRILVTHHVHVLARCDS-VIVMEN 823
                 578**************9863789******************99445677778899********999987654.444555 PP

  == domain 3    score: 74.2 bits;  conditional E-value: 4.1e-23
   TIGR00960    2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgi.ekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervs.aalekv..GlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGk 215 
                  i++++ s +y+ +    l+++++ ++ Ge + + G +G+Gks+l+  +  i e  + G i v g d++++    ++ lr++i i+ qd  ++s+   y+   +a        + ++++ + +++ ++  Gl d   +   ++s G++q ++iar++++kP++l+ de t+ +d+e+   i ++++e n    tvl  +h  n + + + r+l+l++G+
  MMETSP1061-20121228|9206_1 1249 IELSNASMRYRDGPL-VLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRIsEIEKDGSIFVDGVDIGEIG---TAALRQNISIIPQDPVMFSNTIRYNLDPFATTSDEELWDVLKKVEMgEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRE-NFSDATVLTIAHRLNTIMD-SDRILVLDDGH 1460
                  7899999***99987.9***************************9877766156789**********9875...689***********99998877776666665544333333333222233443333*****************************************************9988.6677899999999888765.5799***9998 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0023      0.15      20      54 ..     637     671 ..     630     684 .. 0.86
   2 !   41.3   0.0   4.2e-13   2.7e-11     128     211 ..     747     830 ..     738     832 .. 0.88
   3 !   62.3   0.0   1.6e-19     1e-17       7     210 ..    1255    1464 ..    1249    1467 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0023
   TIGR01277  20 sveaGervailGesGaGkstllnliaGflepasGe 54 
                  ++ G  vai+G  G+Gks++l+ + G +e + G+
  MMETSP1061-20121228|9206_1 637 HIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGS 671
                 577899******************99998888775 PP

  == domain 2    score: 41.3 bits;  conditional E-value: 4.2e-13
   TIGR01277 128 elsGGqrqrvalarclvrekp.illldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvls 211
                 +lsGGq+ rv+lar +   k  +ll+d+p+sa+d ++ e +++        + +t +lvth+++ +a+  + v+v+e+G ik+++
  MMETSP1061-20121228|9206_1 747 NLSGGQKARVSLARAMYSAKTrLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLAR-CDSVIVMENGTIKHQG 830
                 69*************99877527889**************99987777778999*********87665.68999*******9886 PP

  == domain 3    score: 62.3 bits;  conditional E-value: 1.6e-19
   TIGR01277    7 iyeykhlple...fdlsveaGervailGesGaGkstll.nliaGflepasGeikvndkdh..trsapyerpvsmlfqennlfahltvrqnig.lGlkpglkl.navqkekvedvarqv..GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikvl 210 
                   ++y+  pl    ++++v+ Ge++ + G +G+Gks+l+ +l    +   +G+i v+++d   +++a  ++ +s++ q+  +f+  t+r n+  +       l + ++k ++ +v  q+  G++d+++   e++s Gqrq + +ar l+r+  il++de  +++d+     +  ++++  +  + t+l ++h+l+ ++   ++++v++dG+i+ l
  MMETSP1061-20121228|9206_1 1255 SMRYRDGPLVlkdLSFTVKGGEKIGVCGRTGSGKSSLMiALFRISEIEKDGSIFVDGVDIgeIGTAALRQNISIIPQDPVMFSN-TIRYNLDpFATTSDEELwDVLKKVEMGEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFS--DATVLTIAHRLNTIMD-SDRILVLDDGHIAEL 1464
                  44455444431126789******************996245555567889******998533889*****************97.99999972444444455267788899998888666********************************************9998888888887665..78********987765.69**********976 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   1.3   2.1e-15   1.4e-13       6     233 ..     613     841 ..     609     848 .. 0.77
   2 !   63.2   0.0   7.1e-20   4.5e-18       9     237 ..    1249    1480 ..    1245    1485 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 2.1e-15
   TIGR03258   6 tsGvvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadGG.rllvadrdlth.lppykrnlallvqnyalfphlkveenvafGlrar..kqskaliaervadalklvqlsdaaa..rlpaqlsGGqqqrvalaral.vvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapad 233
                 +s v  e+  v     + l +++ +i++G l+a++G  GsGk+++l a+ G +++ GG ++ +   d  + +  y   ++   q   +    +++ n+ fG      +      a  + d + ++  +d ++  +   +lsGGq+ rv+lara+   + ++ll+d+plsa+d+++ + + ++  a  +     t + vth   + l+  d + +m +G++  +G  ++l d+  d
  MMETSP1061-20121228|9206_1 613 ASSVSTEESGVDKVPVITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGsKVYIPRSDDEKeADGY---ISYCTQSPWV-VNDTLKGNILFGRPYDedRYQTIMSACALEDDIAVLPAGDETEigERGINLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLFSNAIAG-EVGQGRTRILVTHH-VHVLARCDSVIVMENGTIKHQGRYQDLIDQGVD 841
                 56666666677777778899***********************************99626778776654303333...5556665443.4557889*****76541144444445566688888888887752245789**************945799*****************9999975543.33445788899996.57999*********************9997655 PP

  == domain 2    score: 63.2 bits;  conditional E-value: 7.1e-20
   TIGR03258    9 vvleslrvayg.arvvlddlsleieaGellallGksGsGkttllravaGfvkadG.GrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrarkqskali.aervadalklvqlsdaaarlpaql...........sGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapadrfva 237 
                  + l + +++y  +  vl+dls++++ Ge + + G++GsGk++l+ a+    + +  G + v + d+  +     + a l qn ++ p   v+   +  +r +  + a   +e + d lk v+++++ a+lp+ l           s Gq+q + +ar+l  +p++l++de  +++d +  a+++  +    +++ + tvl ++h r ++++ +d+il++ +G++++l ++ +l ++ +  f a
  MMETSP1061-20121228|9206_1 1249 IELSNASMRYRdGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIEKdGSIFVDGVDIGEI-----GTAALRQNISIIPQDPVMF--SNTIRYNLDPFATTsDEELWDVLKKVEMGEVIAQLPKGLddlvaeggenfSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMI---RENFSDATVLTIAH-RLNTIMDSDRILVLDDGHIAELDTPDNLLKKESGHFKA 1480
                  778888999953789****************************99988888776679*********987.....5566777777777655432..2234555555554415678888888888888888887543333333333378999***************************9999988655...578999*******9.6778999*********************9999888876 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.2    0.0019      0.12      26      59 ..     630     663 ..     618     675 .. 0.86
   2 !   33.2   0.0   1.2e-10   7.8e-09     148     232 ..     745     829 ..     732     843 .. 0.89
   3 !   68.6   0.0     2e-21   1.3e-19      25     233 ..    1263    1465 ..    1251    1484 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0019
   TIGR02769  26 vldnvslsleeGetvallGrsGaGkstlarlllG 59 
                  l n+  +++ G  va++G+ G+Gks +   +lG
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLG 663
                 589***********************99888887 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 1.2e-10
   TIGR02769 148 PrqlsGGqlqriniaral.avePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqivee 232
                   +lsGGq  r+++ara+ +++ +l+++d+ +s +d +   ++++   + +   G + +++th +++  + ++ v+v+++G i  +
  MMETSP1061-20121228|9206_1 745 GINLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLAR-CDSVIVMENGTIKHQ 829
                 5689*************95789************************9999999************98766.9*********99665 PP

  == domain 3    score: 68.6 bits;  conditional E-value: 2e-21
   TIGR02769   25 avldnvslsleeGetvallGrsGaGkstlarlllGlek.PakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnp.rksvreiigePlrhlts.ldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveei 233 
                   vl+++s++++ Ge +++ Gr+G+Gks l   l  + +  ++G+++  G+d+ ++    + a+r+++ ++ qd +   n+ r  ++   +   ++l + l++ e  + ia+l +   l ++ +    +++s Gq q ++iar+l  +Pk++v+dea +++d    a+i +++++    +  ++l i+h l+ +   ++r+lvld+G+i e  
  MMETSP1061-20121228|9206_1 1263 LVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGVDIGEIG---TAALRQNISIIPQDPVMFSNTiRYNLDPFATTSDEELWDvLKKVEMGEVIAQLPKG--L-DDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIREN--FSDATVLTIAHRLNTIMD-SDRILVLDDGHIAELD 1465
                  69***************************9999988651678*********99886...56899*********987766524445544444444443325666666666666553..4.356677899****************************************9998763..44556788******9976.9***********9854 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.3   4.3e-15   2.8e-13      91     191 ..     739     838 ..     646     882 .. 0.72
   2 !   59.5   0.0   9.2e-19   5.9e-17       3     198 ..    1282    1480 ..    1280    1489 .. 0.77

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 4.3e-15
   TIGR01187  91 eefakrkpsqlsGGqrqrvalaravv.kkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyee 191
                 +e+++r  ++lsGGq+ rv+lara+   k ++LL+D+plsa+D ++ +++  +  a +   G t +lvth     l+  d + v+++G i+  g  +++ ++
  MMETSP1061-20121228|9206_1 739 TEIGER-GINLSGGQKARVSLARAMYsAKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHV-HVLARCDSVIVMENGTIKHQGRYQDLIDQ 838
                 455554.578**************962799********************9998888888899*******86.68****************99988877665 PP

  == domain 2    score: 59.5 bits;  conditional E-value: 9.2e-19
   TIGR01187    3 GpsGsGkttlLrllaGleeld.sGkilldgedvtev..paekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervk..eaLelv..qleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklG.itvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePanefva 198 
                  G +GsGk+ l+  l  + e++  G+i +dg+d+ e+  +a ++++ ++ q+  +f   t+  n+        ++  ++ ++v+  e++      l+++ +   +++s Gqrq + +ar++  kPkiL++De+ +++D++    +q  ++   e++   tv+ ++h + + +  sdri vl +G+ia  ++p+++ ++ + +f a
  MMETSP1061-20121228|9206_1 1282 GRTGSGKSSLMIALFRISEIEkDGSIFVDGVDIGEIgtAALRQNISIIPQDPVMFSN-TIRYNLDPFATTSDEELWDVLKKVEmgEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIR---ENFSdATVLTIAH-RLNTIMDSDRILVLDDGHIAELDTPDNLLKKESGHFKA 1480
                  899********999999988626**********886326778899*999*9999974.777777533333334444444444311333332223677888888999**************************************97555...5554146666666.5667778************************9999988 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0081      0.52      18      49 ..     628     659 ..     620     676 .. 0.87
   2 !   33.7   0.0   6.4e-11   4.1e-09     139     228 ..     746     835 ..     723     841 .. 0.88
   3 !   65.7   0.0   1.2e-20   7.9e-19      20     229 ..    1264    1471 ..    1255    1490 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0081
   TIGR02314  18 ikaldnvslfvpkgqifgvigasgagkstlir 49 
                 + +l n++ ++  g ++ ++g+ g+gks+++ 
  MMETSP1061-20121228|9206_1 628 VITLRNITTHIKPGSLVAIVGSVGSGKSSMLS 659
                 56799***********************9875 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 6.4e-11
   TIGR02314 139 snlsggqkqrvaiaralas.epkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvsei 228
                  nlsggqk rv++ara+ s + ++ll d+  sa+d    + ++      +   g t +l+th ++v+ r cd+v v+++g +  +g   ++
  MMETSP1061-20121228|9206_1 746 INLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLAR-CDSVIVMENGTIKHQGRYQDL 835
                 59**************987267899***************999877666777789**********9987.***********9999987766 PP

  == domain 3    score: 65.7 bits;  conditional E-value: 1.2e-20
   TIGR02314   20 aldnvslfvpkgqifgvigasgagkstl.ircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplelentpkekikrkvt..ellalv..glsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseif 229 
                   l+++s+ v  g+ +gv g +g+gks+l i    + e   +g+++vdg+d+ ++  a l   r++i +i q   +  s t+  n+       ++   ++ +kv+  e++a +  gl d       n+s gq+q + iar+l  +pk+l+ deat+++d  t  +i  +++e     + t+l i+h ++ +    d++ v+d+g++ e +t  +++
  MMETSP1061-20121228|9206_1 1264 VLKDLSFTVKGGEKIGVCGRTGSGKSSLmIALFRISEIEKDGSIFVDGVDIGEIGTAAL---RQNISIIPQDPVM-FSNTIRYNLDPFATTSDEELWDVLKKVEmgEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENF--SDATVLTIAHRLNTIMD-SDRILVLDDGHIAELDTPDNLL 1471
                  589**********************9983566789999*************99998876...999*****99755.56788888764444444455556666643388886555999*99999**********************************************9954..5789*********9976.799***********99977766 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   1.2   1.3e-09     8e-08       9     242 ..     631     863 ..     627     910 .. 0.64
   2 !   76.3   0.1   8.4e-24   5.4e-22       9     216 ..    1265    1475 ..    1258    1494 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 1.3e-09
   TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsG.tarvaGyDvvrepdevRrsigvvpqkasv.dedLtarenlellgelyglpkkeaeeraeellelvelkeaadkk.vk....tysgGmrrrlelaaslia.qPevlfLDEPtiGLDprtrraiw.dlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKe.......rvgkevveverrdikelkkevsllaaelt 242
                 +++++ +++ g++++++G  G GK+ +++ + + ++  +G ++ +   D  +e+d     i+  +q+  v +++L +     l+g+ y+  + ++   a  l + +++  a d++ ++    ++sgG++ r++la+++ + + ++l +D+P + +D++  +++  + i+  + +g t +l th+++ + + +d v+++++G+i  ++  ++L +                  +d+ +++k+ s    e +
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGsKVYIPRSDDEKEAD---GYISYCTQSPWVvNDTLKGN---ILFGRPYDEDRYQTIMSACALEDDIAVLPAGDETeIGergiNLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFsNAIAGEVGQGRTRILVTHHVH-VLARCDSVIVMENGTIKHQGRYQDLIDqgvdfagA----------VDVSKIQKSDSSDEEEAD 863
                 5667777777777777777777777766544343443333145555555555554...35666666654414445443...4677777777777777777777777776666543133222268**************862789**************999987258999*************996.6678********************98733332221..........333333333332222222 PP

  == domain 2    score: 76.3 bits;  conditional E-value: 8.4e-24
   TIGR01188    9 vdgvnlkveegevfglLGPnGAGKtttikmLttllk.PdsGtarvaGyDvvre.pdevRrsigvvpqkasvdedLtarenlellgelyglpkkeaeerae..ellelv..elkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervg 216 
                  ++++++ v+ ge +g+ G  G GK+ ++  L  + +  ++G+ +v G D+ +   + +R++i+++pq+  + ++ t r nl  ++   + + +   +++e  e++ ++   l +   +  +++s G+r+ l +a+sl+ +P++l +DE t  +D +t ++i ++i+e + ++ t+l  +h l+ + + +dr+ ++d G+i+  dtp++L ++  
  MMETSP1061-20121228|9206_1 1265 LKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGVDIGEIgTAALRQNISIIPQDPVMFSN-TIRYNLDPFATTSDEELWDVLKKVEmgEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRE-NFSDATVLTIAHRLNTI-MDSDRILVLDDGHIAELDTPDNLLKKES 1475
                  789**********************998888887762568**********88515699**********988776.8899999998766554444333332226666553357788888899********************************************97.66799*********988.569******************9854433 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   4.2e-06   0.00027      15      62 ..     625     673 ..     617     683 .. 0.82
   2 !   33.1   0.0   1.3e-10   8.5e-09     134     220 ..     740     827 ..     731     828 .. 0.91
   3 !   54.4   1.6   4.1e-17   2.6e-15      19     220 ..    1263    1462 ..    1249    1463 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.2e-06
   TIGR02211  15 kleievlkgvsleiekgelvaivGssGsGkstllh.llggldkptsGev 62 
                 k+ + +l+++  +i+ g lvaivGs GsGks +l  +lg +++    +v
  MMETSP1061-20121228|9206_1 625 KVPVITLRNITTHIKPGSLVAIVGSVGSGKSSMLSaMLGEMESIGGSKV 673
                 5567789************************999636777776555555 PP

  == domain 2    score: 33.1 bits;  conditional E-value: 1.3e-10
   TIGR02211 134 rinkkpselsGGerqrvaiaralv.nkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                  i ++  +lsGG++ rv++ara+   k +l+l d+P + +d++  +++f+     +  ++ + ++vth  ++ ++ d v+ +++g+++
  MMETSP1061-20121228|9206_1 740 EIGERGINLSGGQKARVSLARAMYsAKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLARCDSVIVMENGTIK 827
                 56678889**************9725889*********************99999999999************************986 PP

  == domain 3    score: 54.4 bits;  conditional E-value: 4.1e-17
   TIGR02211   19 evlkgvsleiekgelvaivGssGsGkstllhllggl.dkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskkskkeakerak..ellekv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220 
                   vlk++s+ ++ ge +++ G +GsGks l+  l  + +   +G+++++G ++ ++     a+lr +++  i q   ++   t+  n+   +  s+++  +  ++ +  e++ ++  gl++ + +   ++s G+rq   iar+l+ kPk+++ de t+ +d++t  +i ++++e  +  + ++l ++h l+ +   dr l l dg++a
  MMETSP1061-20121228|9206_1 1263 LVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRIsEIEKDGSIFVDGVDIGEIGT---AALR-QNISIIPQD-PVMFSNTIRYNLDPFATTSDEELWDVLKKVEmgEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFS--DATVLTIAHRLNTIMDSDRILVLDDGHIA 1462
                  49**************************99888777245689*********988764...5565.345666653.3444445555555444444444443322221112333322289999999999********************************************98544..45678899******************986 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0016       0.1      15      59 ..     630     675 ..     617     687 .. 0.82
   2 !   33.7   0.0   7.2e-11   4.6e-09     145     237 ..     746     838 ..     735     844 .. 0.87
   3 !   18.4   0.0   3.4e-06   0.00022       4      61 ..    1252    1311 ..    1249    1332 .. 0.83
   4 !   41.7   0.1   2.5e-13   1.6e-11     144     237 ..    1383    1473 ..    1366    1484 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0016
   TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilri.lmtletideGsikv 59 
                  l ++  ++++G  va++G  GsGks++l   l  +e+i + ++ +
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAmLGEMESIGGSKVYI 675
                 57889999*******************9975155688887777665 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 7.2e-11
   TIGR03005 145 aqlsGGqkqrvaiaral.alrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237
                  +lsGGqk rv++ara+ + + ++ll+d++ sa+d ++ e +++        +  t +lvth++      +d v+ +++G i  +G+ +++ ++
  MMETSP1061-20121228|9206_1 746 INLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLA-RCDSVIVMENGTIKHQGRYQDLIDQ 838
                 579*************846899**************9999998877666677889********98654.48****************9999876 PP

  == domain 3    score: 18.4 bits;  conditional E-value: 3.4e-06
   TIGR03005    4 sdvtkrfge.ltvldglelevaaGekvaliGpsGsGkstilrilmtletid.eGsikveg 61  
                  s+ + r+ +   vl++l+++v+ Gek+ + G +GsGks+++  l+ + +i+ +Gsi v+g
  MMETSP1061-20121228|9206_1 1252 SNASMRYRDgPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIEkDGSIFVDG 1311
                  55556664313599******************************9999885489**9998 PP

  == domain 4    score: 41.7 bits;  conditional E-value: 2.5e-13
   TIGR03005  144 paqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237 
                    ++s Gq+q + iar+l  +pk+l++de+t+++d e    +  ++r+     d t+l ++h+++   + +dr+l +d G+i+e   pd++++k
  MMETSP1061-20121228|9206_1 1383 GENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENF--SDATVLTIAHRLNTIMD-SDRILVLDDGHIAELDTPDNLLKK 1473
                  567899******************************99999999999865..5789*********9998.8*******************9976 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       8.6   5.5e+02     108     146 ..     518     555 ..     504     558 .. 0.85
   2 !   45.7   0.0   1.9e-14   1.2e-12       1     197 [.     631     830 ..     631     839 .. 0.86
   3 !   50.2   0.1   7.9e-16   5.1e-14       1     195 [.    1265    1463 ..    1265    1474 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 8.6
   TIGR01184 108 adkrpeqlsggmkqrvaiaralsirpklllldepfgald 146
                 a+  pe l   mkq v  a +l     + +ld  fg +d
  MMETSP1061-20121228|9206_1 518 AEDAPEILKEAMKQDVE-ASSLQSPGSITILDGSFGWVD 555
                 67778889999***997.778999999********9887 PP

  == domain 2    score: 45.7 bits;  conditional E-value: 1.9e-14
   TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfqnysllpwl...tvrenialavdavlrdlskserreiveehielvglreaad..krpeqlsggmkqrvaiaral.sirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakig 197
                 l+++  +ik g +++++g  g gks++l  + g  +   g+ +   +  +e   d  + +   s  pw+   t + ni +         ++      +e++i+++   + ++   r  +lsgg k rv++ara+ s + +lll+d+p+ a+d+   e+l  + +     +  t ++vth v   l  +d v+++ ng   + g
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKVYIPRSDDEKEADGYISYCTQS--PWVvndTLKGNILFGRPYDEDRYQTIMSACALEDDIAVLPAGDETEigERGINLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVH-VLARCDSVIVMENGTIKHQG 830
                 578999**********************999998888888877778888999999999988776..66433388999999988888888888889999****99866554442278889*************975899************************999999999**********6.78899*********877766 PP

  == domain 3    score: 50.2 bits;  conditional E-value: 7.9e-16
   TIGR01184    1 lkdvdleikkgefislighsgcgkstllnliagl.ekptsgavilegkeitepgpdrmvvfqnysllpwltvr..enialavdavlrd....lskserreiveehielv..glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaak 195 
                  lkd+++++k ge i + g +g gks+l+  +  + e   +g++ ++g +i e g     + qn s++p   v   + i   +d   ++    l    ++  + e i+ +  gl +      e++s g +q + iar+l  +pk+l++de   ++d  t   +q  + + +  +++tvl ++h ++ +++ sdr+++l +g  a+
  MMETSP1061-20121228|9206_1 1265 LKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRIsEIEKDGSIFVDGVDIGEIGTAA--LRQNISIIPQDPVMfsNTIRYNLDPFATTsdeeLWDVLKKVEMGEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENF--SDATVLTIAHRLN-TIMDSDRILVLDDGHIAE 1463
                  7999*********************997655444145679**************875..5799999997654311334444443332200002222222223333332223788888888999***************************************98776655..567999*****96.6899*******9998776 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   9.5e-15   6.1e-13      15     187 ..     630     809 ..     619     818 .. 0.77
   2 !   49.3   0.0   1.5e-15   9.7e-14       9     181 ..    1258    1439 ..    1251    1456 .. 0.78

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 9.5e-15
   TIGR01189  15 lleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesG.evelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveeale...kvg.Lsgledlpva....qLsAGqkrRlalarLlls.kaplWiLDEPttalDke.gvellaellaaHlargGivllathqd 187
                  l++++ ++++G +++++G+ G+GK+++L  + G +++  G +v +  ++ ++++d     + y + ++ + ++ + + n+ f +   ++  +t+  a +   ++  L + +++ +     +Ls Gqk R++lar + s k +l ++D+P+ a+D + g +l+++++a  + +g + +l th+ 
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGsKVYIPRSDDEKEADG---YISYCTQSPWVVND-TLKGNILFGRPYDEDRYQTIMSACAledDIAvLPAGDETEIGergiNLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHvGEHLFSNAIAGEVGQGRTRILVTHHV 809
                 57899*******************************999994588886665555554...59999999988776.78899999888887666665554431122221333333333212337*************766516789***********8736999****************999985 PP

  == domain 2    score: 49.3 bits;  conditional E-value: 1.5e-15
   TIGR01189    9 eRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkp.esGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallqseqktveealekvgL...........sgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivl 181 
                   R++  +l++lsf+++ Ge + v G+ G+GK++L+  l  +++  ++G++ +++ ++ e      ++   +  +d +  + +++ nL+ +a+ +++e   +++ l+kv++           ++l     ++ s Gq++ l +ar ll k ++ ++DE t+++D+e+ +++++++++  +   +  
  MMETSP1061-20121228|9206_1 1258 YRDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIeKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFATTSDEE---LWDVLKKVEMgeviaqlpkglDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLT 1439
                  599999*****************************999999876157**********998777666666677777888888*******999988833...56666665542111111200044444455789******************************************99887654333 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.4    0.0009     0.058       4      36 ..     633     665 ..     630     673 .. 0.88
   2 !   31.4   0.0   3.8e-10   2.4e-08     125     215 ..     747     837 ..     737     842 .. 0.91
   3 !   55.4   0.0   1.9e-17   1.2e-15       2     216 ..    1265    1473 ..    1264    1485 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0009
   TIGR02770   4 dvnlslkrgkvlalvGesGsGksltalailgll 36 
                 ++  ++k g ++a+vG  GsGks   +a+lg +
  MMETSP1061-20121228|9206_1 633 NITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEM 665
                 678899******************999999865 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 3.8e-10
   TIGR02770 125 elsGGmlqRvmialall.leaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfq 215
                 +lsGG   Rv +a a+  +++ ll+ D+P +++D  v  ++ ++    +  +g + +l+th + v+a++ d v+vme+G i  +g  ++l++
  MMETSP1061-20121228|9206_1 747 NLSGGQKARVSLARAMYsAKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLARC-DSVIVMENGTIKHQGRYQDLID 837
                 79***********998725889********************99988888999999************8.99**********9999999887 PP

  == domain 3    score: 55.4 bits;  conditional E-value: 1.9e-17
   TIGR02770    2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal..alrgreialilqnPrsafnPlltikeqlletlk.alekls.kqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqe 216 
                   +d+++++k g+ +++ G  GsGks    a+  + +   ++ +G+i +dg ++ ++  a   ++i++i q+P+   n ++   + +  t    l  +  k     ++++l + gL+    ++ +   ++s G  q + ia +ll ++ +l+ De t+ +D  + a++ ++++e  + ++ ++l i+h l+ +    d ++v+++G+i e  t+++l+++
  MMETSP1061-20121228|9206_1 1265 LKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISE---IEKDGSIFVDGVDIGEIgtAALRQNISIIPQDPVMFSNTIRYNLDPFATTSDeELWDVLkKVEMGEVIAQLPK-GLD---DLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRE--NFSDATVLTIAHRLNTIMD-SDRILVLDDGHIAELDTPDNLLKK 1473
                  589***************************999988...999************9988666678*********999999865555555544033344414444445555544.676...78999999****************************************988876..4457889*********987.79**************99999875 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   4.6e-17   2.9e-15       3     202 ..     638     838 ..     636     850 .. 0.80
   2 !   38.3   0.6   3.8e-12   2.5e-10       2     203 ..    1271    1474 ..    1270    1487 .. 0.68

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 4.6e-17
   TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGra....gliGllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaral.avkpslllldepftGldlpsqellv.elfeelagegtailmtthdlaeavatcdrvvll.ngrvvadgapdqlqda 202
                 +++G l++++G  G+Gk+++l a+lg +++  G  kv    s + +   Gy+    +  w     +++ +l Gr     +   ++     +d +av  a +    te+ +r + +lsGGq+ rv +ara+ + k +lll+d+p++ +d    e+l  + +    g+g++ +++th++ + +a cd v+++ ng++  +g  ++l d 
  MMETSP1061-20121228|9206_1 638 IKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGG-SKVYIPRSDDEKEADGYISYCTQSPWVVNDTLKGNILFGRPydedRYQTIMSACALEDDIAVLPAGD---ETEIGERGI-NLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLFsNAIAGEVGQGRTRILVTHHV-HVLARCDSVIVMeNGTIKHQGRYQDLIDQ 838
                 689*************************95555.5666555777788889**99999*****************722213344445555566677666555...578889999.7**************8457899**************999986256666778899999999986.67888998876548999999999999875 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 3.8e-12
   TIGR03771    2 svdkGellgllGpnGaGkttllrailglikv.akGsvkvagkssrk.g....rreiGyvpqrh.efawdfpidveqtvlsGragliGllrrpkkadfaavadalervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlqdaa 203 
                  +v+ Ge +g+ G  G+Gk++l+ a++ + +  + Gs+ v+g   ++ g    r++i  +pq    f+     ++     +    l  +l++ +  + +a    l    l +l      ++s Gqrq + +ar+l  kp++l++de  + +d+ +  ++  +++e  + + ++l  +h l   +++   +vl +g++    +pd+l + +
  MMETSP1061-20121228|9206_1 1271 TVKGGEKIGVCGRTGSGKSSLMIALFRISEIeKDGSIFVDGVDIGEiGtaalRQNISIIPQDPvMFSNTIRYNLDPFATTSDEELWDVLKKVEMGEVIA---QLP-KGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFS-DATVLTIAHRLNTIMDSDRILVLDDGHIAELDTPDNLLKKE 1474
                  577899*******************9988751579***9996432211111134455555542123333333333333333333444444443333333...233.35667777777789**************************************999998655.5789999****999997555555566666678999997655 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   8.4e-14   5.4e-12      20     227 ..     631     840 ..     611     872 .. 0.74
   2 !   47.8   0.0   3.3e-15   2.1e-13       5     227 ..    1249    1475 ..    1246    1483 .. 0.81

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 8.4e-14
   TIGR01288  20 vndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryfg.lstreieevipsllefarl....eskadvrvadlsggmkrrltlaralin.dpqllildepttgldpha.rhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalideqi 227
                 + +++  i  g    ++g  g+gks++   +lg +    g    +  p     + a   i   +q   +  + t + n+l fgr +   + ++i ++     ++a l    e+    r  +lsgg k r++lara+     +ll++d+p + +d h   hl  + +   + +g+t +l th +    r cd + v+e+g+   +gr + lid+ +
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKVYI--PRSDDEKEADGYISYCTQSPWVV-NDTLKGNIL-FGRPYDeDRYQTIMSACALEDDIAVLpagdETEIGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVgEHLFSNAIAGEVGQGRTRILVTHHVHVLAR-CDSVIVMENGTIKHQGRYQDLIDQGV 840
                 456667788899999999999999988777777555444433332..44455566777788887766554.457888876.6765441333444444444445555511115555566679**************9862679**************7479999************9999999998877.**********************9866 PP

  == domain 2    score: 47.8 bits;  conditional E-value: 3.3e-15
   TIGR01288    5 idlvgvsksygd.kvvvndlsftiaagecfgllgpngagkstiarlvlglispd.egkitvlgepvpararla.rakigvvpqfdnldreftvrenllvfgryfglstreieevipsllefarleskadvrva....dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdalideqi 227 
                  i+l++ s  y d  +v++dlsft+  ge +g+ g  g+gks++   ++ +   +  g i v g ++     +a r +i ++pq d +    t+r nl  f      +  ++ + +     +a+l    d  va    ++s g ++ l +ar+l+  p++l++de t+ +d  +   i   +r  ++   t+l  +h ++      dr+ vl+ g       pd l++++ 
  MMETSP1061-20121228|9206_1 1249 IELSNASMRYRDgPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIEkDGSIFVDGVDIGEIGTAAlRQNISIIPQ-DPVMFSNTIRYNLDPFATTSDEELWDVLKKVEMGEVIAQLPKGLDDLVAeggeNFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSD-ATVLTIAHRLNTI-MDSDRILVLDDGHIAELDTPDNLLKKES 1475
                  89999999998735899*************************9999988887651699999888887655444499******9.7888999*******9998776666666666655556677777777666622226999************************************9999998875.6888888888765.458********98666678999887665 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.7   1.6e-10     1e-08       7     188 ..     630     810 ..     625     812 .. 0.88
   2 !   56.0   0.0   1.2e-17   7.6e-16       1     177 [.    1258    1435 ..    1258    1446 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.6e-10
   TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksG.kvlldGeeldysrkgllelrkkvalvlqdp..ddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagav.alrpdvllldePtagldpa.GaeqlleilrklreeGktvvisthdvd 188
                  l+++  +++ g+ +a++G+ G+Gks +l+ + G +    G kv +  ++ + +  g ++  ++   v+ d+   + lf    ded   + +     e+++       l a d +++ er +  lsgG+k rv++a a+ + ++++ll+d+P + +d++ G++ + +++ + + +G+t ++ th v+
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGsKVYIPRSDDEKEADGYISYCTQSPWVVNDTlkGNILFGRPYDEDRYQTIMSACALEDDIA-----VLPAGDETEIGERGI-NLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHvGEHLFSNAIAGEVGQGRTRILVTHHVH 810
                 5899999******************************9998568898899999999*************997435678999999999999999988888885.....466677777888887.59***********99846899*************8648888999*****************997 PP

  == domain 2    score: 56.0 bits;  conditional E-value: 1.2e-17
   TIGR01166    1 yedeaevlkglnlavergevlallGanGaGkstlllhlnGllr.PksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedva.fgplnlGlseaeverrvr..ealaav..disgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeG 177 
                  y d++ vlk+l+++v+ ge++++ G+ G+Gks l+  l  +    k G + +dG   d +  g  +lr++++++ qdp   +f+ ++  ++  f+      +  +v ++v+  e +a++  ++++l     + +s+G+++ + ia  +  +p++l++de ta++d +    + +++r+   + 
  MMETSP1061-20121228|9206_1 1258 YRDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGV--DIGEIGTAALRQNISIIPQDP--VMFSNTIRYNLDpFATT-SDEELWDVLKKVEmgEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDA 1435
                  8999*******************************999877662678*******6..5578999************99..69****99887423332.22222244455432277777655899*************************************************9998755544 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0       1.6     1e+02     176     199 ..     213     236 ..     200     243 .. 0.88
   2 !   33.2   0.0   6.4e-11   4.1e-09     442     626 ..     594     791 ..     559     813 .. 0.67
   3 !   53.5   0.0   4.9e-17   3.1e-15     455     641 ..    1251    1445 ..    1246    1460 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1.6
   TIGR00954 176 skYlskltfYkvsnldsriknidq 199
                  kY++++ +Y+++ +d+ ++ ++q
  MMETSP1061-20121228|9206_1 213 VKYFESYAYYQMAITDGDVEAAEQ 236
                 58**************99998877 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 6.4e-11
   TIGR00954 442 g..................rgkveaqdngikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslf.RilgelWPvyg.......glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfk.erglsdkdLeqiLeevkLedllereggwdavqdWkdvLsgGekqRiamARlfyH.kPkfavLDEctsAvsvdvEdklyela 626
                 +                  +++v ++++g  ++++p++t      + +++ ++k G+ + i+G  G GKss+   +lge+  + g           k+++g + y  q P++ + tl+  i++    ++ + +  +s   Le+ + ++   d  e e     + +    LsgG+k R+++AR +y  k +  ++D+  sAv   v ++l+++a
  MMETSP1061-20121228|9206_1 594 TtadaadisvdqnnleamsASSVSTEESG--VDKVPVIT------LRNITTHIKPGSLVAIVGSVGSGKSSMLsAMLGEMESIGGskvyiprSDDEKEADGYISYCTQSPWVVNDTLKGNILFGRPYDEDRyQTIMSACALEDDIAVLPAGD--ETE-----IGERGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSNA 791
                 23332222222222222223334444443..35555555......5678999*******************762689******9966666544455667889*******************9976654433033455555555444443333..333.....33444469************99854999********************987 PP

  == domain 3    score: 53.5 bits;  conditional E-value: 4.9e-17
   TIGR00954  455 feniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg............glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedller.eggw.davqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakev..gitllsvshrks 641 
                  + n  +   +g  ++++Lsf vk G+++ ++G  G GKssl+  l  +  +                 t   ++++  +Pq P m   t+R  +      + f     sd++L ++L++v++ +++ +   g+ d v++  +  s G++q + +AR +  kPk  v+DE+t+ +  + +  + ++++e   + t+l+++hr  
  MMETSP1061-20121228|9206_1 1251 LSNASMRYRDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIEKdgsifvdgvdigEIGTAALRQNISIIPQDPVMFSNTIRYNL------DPFA--TTSDEELWDVLKKVEMGEVIAQlPKGLdDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENfsDATVLTIAHRLN 1445
                  555555566788999**************************999999988888899999*99996556788899***************99543......3333..479*************998876356772589*************************************************985337899*****965 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   7.9e-07   5.1e-05      38      72 ..     628     662 ..     594     694 .. 0.81
   2 !   26.4   0.0   8.2e-09   5.3e-07     153     256 ..     736     837 ..     715     991 .. 0.78
   3 !   41.5   0.0   2.2e-13   1.4e-11      38     254 ..    1262    1470 ..    1246    1478 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 7.9e-07
   TIGR00955  38 kellknvsGvaksGellAvlGsSGaGKtTLlnala 72 
                    l+n++ ++k+G l+A++Gs G+GK+ +l+a+ 
  MMETSP1061-20121228|9206_1 628 VITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAML 662
                 46799**************************9875 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 8.2e-09
   TIGR00955 153 cadtrigvpgrvkglSgGerkRlalasellt.dPilLfcDEPTsGLDsfsaasvvk.vLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavk 256
                   +t ig  g    lSgG++ R++la  + + +  lL++D+P s  Ds    ++ + ++ +   +g+t il+ H    ++    d +i++++G + ++G+ +++++
  MMETSP1061-20121228|9206_1 736 GDETEIGERG--INLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSnAIAGEVGQGRTRILVTHH--VHVLARCDSVIVMENGTIKHQGRYQDLID 837
                 5689999666..59*************99862578*****************99853566666667776776674..89********************9988765 PP

  == domain 3    score: 41.5 bits;  conditional E-value: 2.2e-13
   TIGR00955   38 kellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekve...akemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254 
                    +lk+ s ++k Ge + v G  G+GK+ L+ al     +++++ g++ ++G  ++   +  +r++ + + qd +++   t+r +L   a+    ++l    k+  + ev+ +  L k  d ++   g+    S G+r+ l +a  ll +P++L++DE T+++D  + a++ +++++  +   tv+ ti     ++++  d+i++l++G+++ l +p+++
  MMETSP1061-20121228|9206_1 1262 PLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFR--ISEIEKDGSIFVDGVDIGeigTAALRQNISIIPQDPVMFSN-TIRYNLDPFATTSD-EELWDVLKKVEMGEVIAQ--LPKGLDDLVAEGGE--NFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSD-ATVL-TIAHRLNTIMDS-DRILVLDDGHIAELDTPDNL 1470
                  56899**************************87754..456777789*****976511168899999999999988765.88999988888764.447778888888999987..56777778876675..9*********************************9999988888875444.4455.555456677775.99999999999987777776 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   2.6   2.1e-11   1.3e-09      15     223 ..     629     834 ..     611     841 .. 0.75
   2 !   54.6   0.0   3.1e-17     2e-15       2     228 ..    1249    1474 ..    1248    1478 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 2.1e-11
   TIGR03873  15 livddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGe.vdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvd..ralarvelssladrdlstlsGGerqrvhlaral.aqePklllldePtnhldvsaqlella.lvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppae 223
                 + + +++    +G+l +++G  GsGks +l+ + G +++  G+ v +  +d      ++    ++   q s   v+ + +  +++Gr     ++ +  ++  ++ d  ++l + + +++ +r ++ lsGG++ rv lara+ + + +lll+d+P   +d +   +l++ ++   +++g t ++  h +    + cd v+v+++G +   G  ++
  MMETSP1061-20121228|9206_1 629 ITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSkVYIPRSD----DEKEADGYISYCTQ-SPWVVNDTLKGNILFGRPYDEDRYQTIMSA-CALEDdiAVLPAGDETEIGERGIN-LSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLFSnAIAGEVGQGRTRILVTHHVHV-LARCDSVIVMENGTIKHQGRYQD 834
                 34567888899************************9998877514444444....34444556666666.577899999********6555566554322.222221146788899999***985.9*************846789*************8876666542677777999999999998865.557***********999887665 PP

  == domain 2    score: 54.6 bits;  conditional E-value: 3.1e-17
   TIGR03873    2 lrlsrvsvr.aggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGl.lapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevltpe 228 
                  ++ls++s+r ++g l+++d+  t+  G+  g+ G  GsGks l+  l  + +  ++G++ ++g+d+  +   a  ++++++ qd     +    +   +  +    l+    + + + v + l   +l++l     + +s G+rq   +ar+l ++Pk+l++de t  +d ++   + +++re   + +tv+   h ln   + +d+++vld G ++   +p ++l +e
  MMETSP1061-20121228|9206_1 1249 IELSNASMRyRDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRIsEIEKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFATTSDEELWDVLKKVEMGEVIAQLP-KGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIREN-FSDATVLTIAHRLNTI-MDSDRILVLDDGHIAELDTPDNLLKKE 1474
                  5678888773689999**************************98766665155678**************99999********98777766666666777788888887766555554444454.589*******************************************************9.6788999999***976.568************999999988765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3   9.6e-09   6.1e-07      18     219 ..     631     835 ..     622     856 .. 0.76
   2 !   55.9   0.0   1.5e-17   9.6e-16      17     224 ..    1264    1475 ..    1248    1496 .] 0.82

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 9.6e-09
   TIGR03522  18 ldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylef....saalyk..lkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhd.PkvlildePttGldPn..qlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleel 219
                 l +++ ++++G++v  +G  G+Gks+++  + g +++ +Gs         ++ +e+   i y  +   +  d  ++  + f      + y+  ++  +l++ ++  +  +G ++e   +  +ls G + rv la+a+     ++l++d+P + +d      +   ++  e+++ +t il th +  v a cd vi++++G i  + + ++l
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKVYIPR--SDDEKEADGYISYCTQSPWVVNDT-LKGNILFgrpyDEDRYQtiMSACALEDDIA--VLPAGDETEIGERGINLSGGQKARVSLARAMYSAkTRLLLMDDPLSAVDSHvgEHLFSNAIAGEVGQGRTRILVTHHV-HVLARCDSVIVMENGTIKHQGRYQDL 835
                 6789999*****************************99999654443..468899999999988765555554.444444411114444542233344444443..4467888888888889***************9751568889********86224455577888*************87.699**************988887777 PP

  == domain 2    score: 55.9 bits;  conditional E-value: 1.5e-17
   TIGR03522   17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylk.adsGsvavagedvlkn.slevrkniGylPehnPlyldlyvreylefsaal..yklkgrklkkrveelielv..GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaek 224 
                  +l+++sf+++ Ge +G  G  G+Gks+lm  l    +  + Gs++v+g d+ +  + + r+ni  +P+  P+     +r  l+  a+    +l + ++k ++ e+i++   Gl        +++s+G rq   +a++ll +Pk+l++de t+ +d +    i+++i+e   d tv+  +h ++ +    dr+++++ G+i   ++ ++l ++e+
  MMETSP1061-20121228|9206_1 1264 VLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGVDIGEIgTAALRQNISIIPQD-PVMFSNTIRYNLDPFATTsdEELWDVLKKVEMGEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIMD-SDRILVLDDGHIAELDTPDNLLKKES 1475
                  7899************************9877655441578**********9861567899******86.555556677777654444124678889999999***9965589998999999**********************************************************9998865.79**********99888888876665 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   6.7e-10   4.3e-08      17     228 ..     630     834 ..     617     840 .. 0.85
   2 !   49.8   0.0   1.2e-15   7.7e-14      13     220 ..    1260    1461 ..    1249    1474 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 6.7e-10
   TIGR03411  17 alndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllv.qepkllllDePvaGmtde..etektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGslde 228
                  l++++ ++++g+l +i+G+ G+Gk+ +l ++ G +++  Gs ++    + + ++++ a   i+   q+p v ++ t + n+      d++ ++++++ ++ e++  +  + +    e++  ++  +Ls Gqk ++ ++  +   +++lll+D+P + + ++  e+     +  e+ + r+ ++v h ++ +++ + +v v+++G++  +G  ++
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKVY----IPRSDDEKEADGYISYCTQSPWVVND-TLKGNILFGRPYDEDRYQTIMSACALEDDIAVLPAGD----ETEIGERGINLSGGQKARVSLARAMYsAKTRLLLMDDPLSAVDSHvgEHLFSNAIAGEVGQGRTRILVTHHVHVLARCD-SVIVMENGTIKHQGRYQD 834
                 6889999*****************************998887554....7788899999999**********865.99******************98888777666555544....5566677899**********99876526899********9997652255556778899**************9998876.689*******99998765 PP

  == domain 2    score: 49.8 bits;  conditional E-value: 1.2e-15
   TIGR03411   13 dgfkalndlslsveegelrviiGpnGaGkttllDvitGktr.pdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenle.lalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkv 220 
                  dg   l+dls++v+ ge   + G  G+Gk+ l+ ++    +  ++Gs++++g d+ ++ +a + r+ i+   q p +f++ t++ nl+  a+++d++++++l +    e  e i+++    gL++ + +   + s Gq+q L i+  l+++pk+l++De +a + +e  +++ ++++e  ++ +v+ + h ++ + +  +++ vl +G++
  MMETSP1061-20121228|9206_1 1260 DGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGVDIGEIGTAAL-RQNISIIPQDPVMFSN-TIRYNLDpFATTSDEELWDVLKKV---EMGEVIAQLP--KGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIMDS-DRILVLDDGHI 1461
                  677789*************************99888766551567**********99987765.778********99976.8999998689999*******9433...3333444433..389999**************************************999999999********************99885.67889999987 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0063      0.41      15      48 ..     630     663 ..     617     681 .. 0.80
   2 !   28.3   0.0   2.2e-09   1.4e-07     168     262 ..     747     841 ..     738     864 .. 0.82
   3 !   18.5   0.1     2e-06   0.00013       2      54 ..    1250    1303 ..    1249    1325 .. 0.82
   4 !   29.4   0.1     1e-09   6.5e-08     426     518 ..    1384    1473 ..    1349    1492 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0063
   TIGR03269  15 vlknisleleeGevlGilGksGaGksvllhllrG 48 
                  l+ni  +++ G ++ i+G  G+Gks +l  + G
  MMETSP1061-20121228|9206_1 630 TLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLG 663
                 699**********************988765544 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 2.2e-09
   TIGR03269 168 dlsGGekqrvvlarql.akeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevvakfle 262
                 +lsGG+k rv lar + + +  lll d+p  ++d +  + + +  +++   ++ + +l +h+ +v++  +d  i++e+G+i+++G  ++++++ ++
  MMETSP1061-20121228|9206_1 747 NLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLAR-CDSVIVMENGTIKHQGRYQDLIDQGVD 841
                 79************983346678899**********99877666666666777788888899999997.6999*************9999987655 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 2e-06
   TIGR03269    2 evenltkkf.dglevlknisleleeGevlGilGksGaGksvllhllrGldeyep 54  
                  e+ n  +++ dg  vlk++s++++ Ge +G+ G++G+Gks l+  l  + e e+
  MMETSP1061-20121228|9206_1 1250 ELSNASMRYrDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIEK 1303
                  667777777355689*************************99988877777554 PP

  == domain 4    score: 29.4 bits;  conditional E-value: 1e-09
   TIGR03269  426 delseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeivee 518 
                  +++s+G+r  + +a+ l+++p+i+++de t ++d  t  ++++ i +     + t + ++h ++ +++  dr+ ++ dG+i ++  p++++++
  MMETSP1061-20121228|9206_1 1384 ENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFS--DATVLTIAHRLNTIMD-SDRILVLDDGHIAELDTPDNLLKK 1473
                  45566666666666666666666666666666666666666655543322..3455556666665555.466666666666666666665544 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.3e-05    0.0015      22      59 ..     629     666 ..     613     680 .. 0.84
   2 !   13.2   0.0   0.00015    0.0095     150     207 ..     748     807 ..     745     823 .. 0.69
   3 !   21.2   0.0   5.4e-07   3.5e-05      23      67 ..    1264    1309 ..    1258    1329 .. 0.83
   4 !   23.7   0.0   9.4e-08   6.1e-06     149     208 ..    1385    1443 ..    1371    1455 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.3e-05
   TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYl 59 
                  +l++++ +++ G lva+ G+ G+Gks++l ++ ++  
  MMETSP1061-20121228|9206_1 629 ITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEME 666
                 45789*************************99987665 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 0.00015
   TIGR02324 150 fsGGekqRvniaraliadrPiLLL.dePtasLdaanrk.vvvelikeakargaaligifh 207
                  sGG k Rv +ara+ + + +LLL d+P +++d+   +    + i+    +g + i + h
  MMETSP1061-20121228|9206_1 748 LSGGQKARVSLARAMYSAKTRLLLmDDPLSAVDSHVGEhLFSNAIAGEVGQGRTRILVTH 807
                 69*************998877654389*99999865430334555555555555555555 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 5.4e-07
   TIGR02324   23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpe.sgrilv 67  
                  vlk++s++v+ Ge + + G++G+Gks+l+ +l++   +e  g+i+v
  MMETSP1061-20121228|9206_1 1264 VLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIEkDGSIFV 1309
                  799******************************9766541466655 PP

  == domain 4    score: 23.7 bits;  conditional E-value: 9.4e-08
   TIGR02324  149 tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208 
                   fs G +q + iar+l+ +  iL++de tas+d+ + +++  +i+e   + a++++i h 
  MMETSP1061-20121228|9206_1 1385 NFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENF-SDATVLTIAHR 1443
                  7*****************888999**************9999999976.56778888885 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0023      0.15      15     306 ..     629     661 ..     621     686 .. 0.68
   2 !   12.0   0.0   0.00018     0.012     403     483 ..     747     828 ..     735     841 .. 0.80
   3 !   50.5   0.9   3.7e-16   2.4e-14     277     482 ..    1266    1462 ..    1259    1474 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0023
   TIGR02633  15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhvatkdaealseddiitmmvGreltslypkepheigdvilevenltaydvvnrkikrvddvsfslrrGeilGvaGlvGaGrtelvqal 306
                  +l ni+ ++++G +v++ G  G+Gks+++                                                                                                                                                                                                                                                                     +
  MMETSP1061-20121228|9206_1 629 ITLRNITTHIKPGSLVAIVGSVGSGKSSMLSA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M 661
                 55677777777777777777777777766543...................................................................................................................................................................................................................................................................3 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 0.00018
   TIGR02633 403 rlsGGnqqkavlak.llllnprvlildeptrGvdvGakyeiy.klinqlaqeGvaiivvsselaevlGlsdrvlvigeGklka 483
                 +lsGG++ +  la+ + + + r+l++d+p   vd      ++ + i+  + +G + i+v+     vl  +d v+v+++G +k 
  MMETSP1061-20121228|9206_1 747 NLSGGQKARVSLARaMYSAKTRLLLMDDPLSAVDSHVGEHLFsNAIAGEVGQGRTRILVTHH-VHVLARCDSVIVMENGTIKH 828
                 58999999999998355788999999999999997777776624677778889998888766.57999999999999999886 PP

  == domain 3    score: 50.5 bits;  conditional E-value: 3.7e-16
   TIGR02633  277 ddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavlkkfak..ksrideaaelkaieeeikrlkvktaspdlpia..rlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklk 482 
                  +d+sf+++ Ge +Gv G  G+G++ l+ alf   + + +g++f+dg ++     + a+r++i+++p+d              n     l+ fa+    ++ +  ++  + e i +l  k  +  ++ +  ++s G++q   +a+ ll +p++l++de t  +d  + + i ++i +   +  +++ ++  l  ++  sdr+lv+++G++ 
  MMETSP1061-20121228|9206_1 1266 KDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIEKDGSIFVDGVDIGE-IGTAALRQNISIIPQDPVMFS---------NTIRYNLDPFATtsDEELWDVLKKVEMGEVIAQLP-KGLDDLVAEGgeNFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSD-ATVLTIAHRLNTIMD-SDRILVLDDGHIA 1462
                  689999999999999999999999999999999999999999999977753.345689999999999854333.........33333455555521223333333333444444443.33333333321257999999999999999999999999999999999999999999887665.567888999988876.9999999999875 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       8.4   5.4e+02     264     328 ..      83     147 ..      69     177 .. 0.51
   2 !    9.3   0.2    0.0016       0.1      37      87 ..     628     679 ..     607     689 .. 0.83
   3 !   33.8   0.0   5.9e-11   3.8e-09     164     256 ..     747     839 ..     740     924 .. 0.88
   4 !   29.2   0.6   1.4e-09   9.2e-08      40     257 ..    1265    1475 ..    1256    1484 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 8.4
   TIGR03415 264 fvahtnPlnvltakdlmreleale.kv..ddelvlskrkdtylekadkqveeaaaklalaataaeqev 328
                 f++ +nPl  l +++++++ +    ++  + e ++s+ k+++ ++ +  + +  ++ +l + + eqe+
  MMETSP1061-20121228|9206_1  83 FMSYLNPLLSLGSRKVLESSDVGVpSAedQAERAYSSAKKAWDDQVE--LCRI-HNEPLLEKKKEQEA 147
                 88888999888888888874432201100122233333333333333..1111.22222222222222 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0016
   TIGR03415  37 vlgvadasldveeGeilvlmGlsGsGkssllravng.lnpvsrGkvlvkded 87 
                 v+  ++++ +++ G ++ ++G  GsGkss+l a+ g ++++   kv +   d
  MMETSP1061-20121228|9206_1 628 VITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGeMESIGGSKVYIPRSD 679
                 788999*************************998653777777777776554 PP

  == domain 3    score: 33.8 bits;  conditional E-value: 5.9e-11
   TIGR03415 164 elsGGmqqrvGlaraf.ateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkP 256
                 +lsGG + rv lara+ + ++ +llmd+P+sa+d  + ++l  + ++      +t ++v+h +    +  + + +me+G i  +g  ++++ + 
  MMETSP1061-20121228|9206_1 747 NLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLAR-CDSVIVMENGTIKHQGRYQDLIDQG 839
                 79*************637899*****************************************986555.567889********9*999998765 PP

  == domain 4    score: 29.2 bits;  conditional E-value: 1.4e-09
   TIGR03415   40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsr.Gkvlvkdedkevdvakcdeatlrk....lrtkrvsmv.fqkfallPWrtveenvafGlelsGvakaerrkrveeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPa 257 
                   +d s++v+ Ge + + G +GsGkssl+ a+ +++ + + G++ v      vd+ ++ +a+lr+    + ++ v      ++ l P+ t ++      el  v k+    +v +ql   gl++   +  +++s G +q + +ar++  + +il+mde  +++d    a +q  + e       t++ ++h l+  +   +ri ++++G+i  l+tp+++++k +
  MMETSP1061-20121228|9206_1 1265 LKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIEKdGSIFVDG----VDIGEIGTAALRQnisiIPQDPVMFSnTIRYNLDPFATTSDE-----ELWDVLKKVEMGEVIAQLP-KGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIREN--FSDATVLTIAHRLNTIMD-SDRILVLDDGHIAELDTPDNLLKKES 1475
                  67899********************************8747887754....555555555555311103333333221235666666666665.....8888888888888888886.599*************************************************9865443..34689********98887.79******************998765 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   2.6e-06   0.00017      16     209 ..     631     833 ..     625     841 .. 0.75
   2 !   45.2   0.1   2.9e-14   1.9e-12       6     203 ..    1254    1462 ..    1249    1474 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.6e-06
   TIGR03740  16 vnnvslkvkknsvygllGpnGaGkstllklltGllrktsG.eilldgrewtrkdlkkiGsliesPalyenltarenl.........kvrtlllglpesrieevlkivdlentekkkakqfslGmkqrlGiaialln.kPkllildePtnGldP.lGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkyekkid 209
                 + n++ ++k  s+ +++G  G+Gks++l  + G ++   G ++++  ++  ++    i    +sP + ++ t + n+         + +t++ +   +    vl   d ++++ +   ++s G k r+ +a a+   k +ll++d+P   +d  +G + + + i     +G t il +h +  v   +d + ++++G++k++++++
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGsKVYIPRSDDEKEADGYISYCTQSPWVVND-TLKGNIlfgrpydedRYQTIMSACALEDDIAVLPAGDETEIGER-GINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDShVGEHLFSNAIAGEVGQGRTRILVTHHV-HVLARCDSVIVMENGTIKHQGRYQ 833
                 6899999*********************999998888887256676666666666777777777766544.44445411111111155555555555554556766666666654.5689*************9853789************83566667899**********99999976.46667899************9987 PP

  == domain 2    score: 45.2 bits;  conditional E-value: 2.9e-14
   TIGR03740    6 lskkfkkq.avvnnvslkvkknsvygllGpnGaGkstllklltGllr.ktsGeilldgrew...trkdlkkiGsliesPalyenltarenlkvrtlllg......lpesrieevlkiv..dlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklk 203 
                   s ++++   v++++s++vk  +  g+ G  G+Gks+l+  l  + + ++ G+i +dg ++       l++  s+i + ++    t r nl   +++ +      l++ ++ ev+  +  +l++      ++fs G +q l ia +ll+kPk+l++de t  +d      ++++i+   ++  tv+  +h l  +   +d i ++ +G++ 
  MMETSP1061-20121228|9206_1 1254 ASMRYRDGpLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEiEKDGSIFVDGVDIgeiGTAALRQNISIIPQDPVMFSNTIRYNLDPFATTSDeelwdvLKKVEMGEVIAQLpkGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSD-ATVLTIAHRLNTIM-DSDRILVLDDGHIA 1462
                  555666542689***************************999999763678******98762225678877777776655555558888988655543212222267777777777653367788888899**********************************9999999999875554.57788889998885.47888888888775 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   5.4e-06   0.00035      22      65 ..     636     679 ..     625     687 .. 0.88
   2 !   13.4   0.0   0.00014     0.009     141     222 ..     747     832 ..     737     839 .. 0.80
   3 !    8.1   0.0    0.0058      0.37      20      48 ..    1267    1296 ..    1249    1315 .. 0.78
   4 !   19.2   0.0   2.4e-06   0.00015     140     218 ..    1384    1463 ..    1375    1474 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 5.4e-06
   TIGR02323  22 sflypGevlgivGesGsGkstllkalaarlladaGevtyesrsr 65 
                 + + pG +++ivG  GsGks++l+a+ +++ +  G+  y  rs+
  MMETSP1061-20121228|9206_1 636 THIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKVYIPRSD 679
                 4599***********************************99986 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 0.00014
   TIGR02323 141 afsGGmqqrlqiarnlv.trprlvfm.eptGGlvsvqarllllrglvrelg..laviivthlavarllaqrllvmkqGrvvesGlt 222
                 ++sGG + r+ +ar++  ++ rl++m +p   + s     l+  ++  e+g   + i+vth   +   ++ ++vm++G +  +G  
  MMETSP1061-20121228|9206_1 747 NLSGGQKARVSLARAMYsAKTRLLLMdDPLSAVDSHVGEHLFSNAIAGEVGqgRTRILVTHHVHVLARCDSVIVMENGTIKHQGRY 832
                 68************9862689*****9999999888888888888888876115789***96555556789*******99988865 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0058
   TIGR02323   20 rvsf.lypGevlgivGesGsGkstllkala 48  
                   +sf +  Ge +g+ G +GsGks+l+ al 
  MMETSP1061-20121228|9206_1 1267 DLSFtVKGGEKIGVCGRTGSGKSSLMIALF 1296
                  48998999*****************98874 PP

  == domain 4    score: 19.2 bits;  conditional E-value: 2.4e-06
   TIGR02323  140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivthlavarllaqrllvmkqGrvve 218 
                  ++fs G +q l iar+l+ +p++++m e t  +    +a +  ++r+     + +v+ ++h   + + ++r+lv+  G++ e
  MMETSP1061-20121228|9206_1 1384 ENFSQGQRQLLCIARSLLRKPKILVMdEATASIdNETDATIQrMIRENFS--DATVLTIAHRLNTIMDSDRILVLDDGHIAE 1463
                  57************************777777655555555444444444..34566788955666889*********9987 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0016      0.11     338     374 ..     631     667 ..     565     683 .. 0.77
   2 !   14.0   0.0   4.8e-05     0.003     161     250 ..     747     839 ..     727     910 .. 0.69
   3 !   14.2   0.0   4.2e-05    0.0027      13      58 ..    1257    1302 ..    1248    1334 .. 0.64
   4 !   22.5   0.1   1.3e-07     8e-06     134     236 ..    1353    1461 ..    1343    1482 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0016
   TIGR03719 338 iddlsfklpkggivGviGpnGaGkstlfklitgkekp 374
                 + +++ ++ +g++v ++G+ G+Gks ++  + g+ ++
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMES 667
                 5567777777888888888888887777776666544 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4.8e-05
   TIGR03719 161 klsGGekrrvalcrllle.kPdlllldePtnhldaesvaWl.ekflkeykG...tvvavthdryfldnvaeWileldrGegipykgnysswleqk 250
                 +lsGG+k rv+l+r + + k  lll+d+P   +d+   + l  + ++   G   t ++vth  + l    + ++ ++ G+ i ++g y + ++q 
  MMETSP1061-20121228|9206_1 747 NLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLfSNAIAGEVGqgrTRILVTHHVHVLARCDS-VIVMENGT-IKHQGRYQDLIDQG 839
                 68899999999998877625678888999888888877766233444333323466888888888877554.44466664.67788887777765 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 4.2e-05
   TIGR03719   13 vvppkkeilkdislsffpgakiGvlGlnGaGkstllkimaGvdkef 58  
                   + +   +lkd+s++   g kiGv G  G+Gks+l+  +  + +  
  MMETSP1061-20121228|9206_1 1257 RYRDGPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIE 1302
                  4445556777777777777777777777777777776555554433 PP

  == domain 4    score: 22.5 bits;  conditional E-value: 1.3e-07
   TIGR03719  134 adawdldskleiamdalrlpee.dakv....eklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflke.y.kGtvvavthdryfldnvaeWileldrGeg 236 
                  ++ wd+ +k+e+     +lp+  d  v    e++s G+++ + ++r ll kP +l++de t  +d e+ a ++++++e + + tv+ ++h    + + ++ il ld G+ 
  MMETSP1061-20121228|9206_1 1353 EELWDVLKKVEMGEVIAQLPKGlDDLVaeggENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIREnFsDATVLTIAHRLNTIMD-SDRILVLDDGHI 1461
                  56788888888888888888753333433335899***************************************99763634688899986443333.566777777775 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   3.2e-05     0.002      16      51 ..     631     666 ..     620     679 .. 0.88
   2 !   13.9   0.0   9.3e-05    0.0059     135     229 ..     740     832 ..     712     840 .. 0.84
   3 !   34.3   0.3   5.3e-11   3.4e-09      14     225 ..    1263    1463 ..    1249    1475 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.2e-05
   TIGR01978  16 LkglnlevkkGevhaimGpnGsGkstLskvlaghek 51 
                 L++++ ++k+G ++ai+G+ GsGks + +++ g+ +
  MMETSP1061-20121228|9206_1 631 LRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEME 666
                 899************************999999765 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 9.3e-05
   TIGR01978 135 elleRslneGfsGGekkrneilq.lallePklaiLDeiDsGlDvDa.lkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdv 229
                 e+ eR +n   sGG k r  + + +   + +l ++D+  s +D     ++ ++ +     + ++ +++th+ ++l   + d v v+ +G+i ++G  
  MMETSP1061-20121228|9206_1 740 EIGERGIN--LSGGQKARVSLARaMYSAKTRLLLMDDPLSAVDSHVgEHLFSNAIAGEVGQGRTRILVTHHVHVLA--RCDSVIVMENGTIKHQGRY 832
                 66778887..6*********986478899**************875156778999999999**********99997..579***********99975 PP

  == domain 3    score: 34.3 bits;  conditional E-value: 5.3e-11
   TIGR01978   14 eiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklellelde..elleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivk 225 
                   +Lk+l+ +vk Ge   + G+ GsGks L+ +l   +++e  +G+i ++g d+ e+ +    r+ + +  q p+       ++ +r  l+   ++ +ee     +  k+++    + +l++  + l  +  e fs G ++   i + +l +Pk+ ++De+ + +D ++  ++ +++ +  + + ++l i+h  rl   +  d + vl dG+i++
  MMETSP1061-20121228|9206_1 1263 LVLKDLSFTVKGGEKIGVCGRTGSGKSSLMIALFRISEIE-KDGSIFVDGVDIGEIGTAA-LRQNISIIPQDPV-----MFSNTIRYNLDPFATTSDEEL---WDVLKKVEMGEVIAQLPKglDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFS-DATVLTIAH--RLNTIMDSDRILVLDDGHIAE 1463
                  48******************************99988877.79*************9875.5888999999995.....567788888888886555553...444444444444444444113333344566********************************9999889888876544.455566666..7889999************86 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.6       2.2   1.4e+02      25      78 ..     290     341 ..     248     498 .. 0.74
   2 !   19.1   0.0   1.4e-06   8.7e-05     332     548 ..     606     827 ..     576     831 .. 0.75
   3 ?   -1.0   0.0       1.6   1.1e+02      61     125 ..     973    1037 ..     942    1075 .. 0.73
   4 !   23.8   0.0   5.1e-08   3.3e-06     336     548 ..    1248    1462 ..    1235    1466 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.2
   TIGR01194  25 llGlisGlaiilllavinqalheetflrqvllsfvGlsllallsrivadlftay 78 
                 l+  ++G a++   +v+n  + ++t++ q +l f+G++ +a l +iv +lf  y
  MMETSP1061-20121228|9206_1 290 LTVSAAGRAMTSTGQVVN-MMSNDTMQLQRFLQFAGFTAIAPL-QIVISLFLIY 341
                 344455555555554444.456666666666666666666654.3444444444 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 1.4e-06
   TIGR01194 332 ksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpde.kkqasldqattylsrleledkvkvedlnyst.....ttdlstGqrkrlalvnayle.erpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvv 548
                   ++++    v  +   v+     +l  i  +i+ G lv ivG  G Gks+++  +lG      G  +    + sd+ ++    +  +  + + + d l +    ++    d+ +t +s   led + v   +  t       +ls Gq+ r++l  a    +  +ll+d+  +  d      ++ + +     +G+t ++++h  + +   d +i + +G++ 
  MMETSP1061-20121228|9206_1 606 NNLEAMSASSVSTEESGVDKVPVITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKVYI--PRSDDEKEADGYISYCTQSPWVVNDTLKGNILfGRPYDEDRYQTIMSACALEDDIAVLPAGDETeigerGINLSGGQKARVSLARAMYSaKTRLLLMDDPLSAVDSHVGEHLFSNAIAGEVGQGRTRILVTHHVHVLARCDSVIVMENGTIK 827
                 44455555566666666666677889999999***************************99999987764..44444444333333344455555555555433146667889999*************887766522222469************99665156788999999999999988888888888899************************999985 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 1.6
   TIGR01194   61 lsllallsrivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdt 125 
                  l  l++l      +f a    +   +l   l++ vl ap+   +     r+l  ++ d+d+l+  
  MMETSP1061-20121228|9206_1  973 LGFLSILGLGFRGIFLAMHRLKASQKLHDGLTDAVLRAPISFFDVTPVGRVLNRFAADMDKLDLE 1037
                  333344444444566666666677789999******************************99644 PP

  == domain 4    score: 23.8 bits;  conditional E-value: 5.1e-08
   TIGR01194  336 slelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstli.klllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlvqpdekkqa..sldqattylsrleledkvk.....vedlnystttdlstGqrkrlalvnayleerpvllldewaadqdp....afkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvv 548 
                   +el +  + y+d     ++ l  + ++++ Ge + + G  G Gks+l+  l+    i ++G +++dG  + +      r+  s +  d  +f + +  + +  a  s ++    l+++e+ + +      + dl      ++s Gqr+ l +  + l +  +l++de +a  d     + +r+  e++         t+l i+h  +    +dr++ l dG + 
  MMETSP1061-20121228|9206_1 1248 EIELSNASMRYRD----GPLVLKDLSFTVKGGEKIGVCGRTGSGKSSLMiALFRISEIEKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFAttSDEELWDVLKKVEMGEVIAqlpkgLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNetdaTIQRMIRENF------SDATVLTIAHRLNTIMDSDRILVLDDGHIA 1462
                  5667777777665....4788999999*******************98615556667999*************************************976665550055666788*****9988762222355666677889**************************999766500105555554433......347999999999999999999999999875 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   3.8e-07   2.5e-05      29     293 ..     583     830 ..     562     836 .. 0.71
   2 !   20.9   0.3   1.9e-07   1.2e-05     783     979 ..    1269    1459 ..    1264    1462 .. 0.63

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 3.8e-07
   TIGR00956  29 gvaykdlsvegvaadaeyqstlvnillklleeilrklkkekeskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeikkhyrgdvvYsaetdvHlpsltvketLdfaarlktpqnRvkgvsreeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlv.akakiqcwDnatrGLDsata.lefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfG 293
                   + ++ +++g++ada+  s  +n l  +  + + + ++  ++  +  l+++ + ikpg lv ++G  gsG+s++L ++ +++e       sk+ Y  + + + +k+  g + Y++++        v++tL+  + +     R+   +r + + +  ++   i  L    +t++G+  +  +sGG++ Rvs+a ++  ak++++++D+    +Ds      f +a+   +    +  lv+ +    ++    d v+v+++G + ++G
  MMETSP1061-20121228|9206_1 583 RASRRKSNASGTTADAADISVDQNNLEAMSASSVSTEESGVDKVPVITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGG---SKV-Y--IPRSDDEKEADGYISYCTQSP-----WVVNDTLKGNILFG----RPYDEDRYQTIMSACALEDDIAVLPAGDETEIGERGIN-LSGGQKARVSLARAMYsAKTRLLLMDDPLSAVDSHVGeHLFSNAIAGEVGQGRTRILVTHH---VHVLARCDSVIVMENGTIKHQG 830
                 4556677777877777777777777766666666666666677777789999999999999999999999999999999999987766...555.4..566677788999999999974.....46899999988775....55555666666677777777888999999999996553.6999999999998765168889999999999999765134556666666555555555543...3455666667777666666666 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 1.9e-07
   TIGR00956  783 dGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrklds....sFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkG 979 
                  +  vk G+   + G  G Gk  L+ +L       + ++g ++v+g ++ +    + + +i  + q+ + +   t+r  L   A     +      k e   evi   +l +  d +v + Ge  +  qR+ l i+  L  kPk+ l +De t+ +D  t ++i +++r+      a + ti     ++++  Dr+L+l  G
  MMETSP1061-20121228|9206_1 1269 SFTVKGGEKIGVCGRTGSGKSSLMIALFRI--SEIEKDGSIFVDGVDIGEigtaALRQNISIIPQDPV-MFSNTIRYNLDPFATTSDEELWDVLKKVEM-GEVI--AQLPKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKI-LVMDEATASIDNETDATIQRMIRENF--SDATVLTIAHRLNTIMDS-DRILVLDDG 1459
                  555666666666666666666666666433..233344555555544432111133334444444333.444566666665555443333333333333.3333..3456778999**************************65.569********************754..456666777667777765.999988766 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   4.1e-06   0.00027     957    1122 ..     642     811 ..     621     856 .. 0.59
   2 ?   -2.8   0.2       1.5        99    1679    1769 ..    1058    1146 ..    1034    1157 .. 0.73
   3 !   24.3   0.0   1.1e-08   6.9e-07     959    1147 ..    1278    1470 ..    1254    1492 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.1e-06
   TIGR01257  957 qitaflghngagktttlsiltgllpptsgt.vlvggkdietnldavrqslgmcpqhnilfhhltvaehilf...yaqlkgrsw.eeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiaf.vgdakvvvldeptsgvdpysrrsiwdlll..kyrsgrtiimsthhmde 1122
                   + a++g  g+gk++ ls + g +    g+ v +   d e + d     +  c q   ++   t+   ilf   y + + ++    + le +  +  +g      e   +lsgg + ++s+a a+    ++++++d+p s vd +    ++   +      grt i+ thh+  
  MMETSP1061-20121228|9206_1  642 SLVAIVGSVGSGKSSMLSAMLGEMESIGGSkVYIPRSDDEKEADG---YISYCTQSPWVVN-DTLKGNILFgrpYDEDRYQTImSACALEDDIAVLPAGDETEIGERGINLSGGQKARVSLARAMySAKTRLLLMDDPLSAVDSHVGEHLFSNAIagEVGQGRTRILVTHHVHV 811 
                  566777777777777777777777776664366777777777665...4566777665554.3566666662222222222221233455555555566666667777777777777777777641455667777777777777777777665441145567777777777653 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.5
   TIGR01257 1679 davvaicvifamsfvpasfvlyliqervnk.akhlqfisgvspttywltnflwdimnyavsaglvvgifigfqkkaytssenlpalvallll 1769
                    +va    f + ++p  f+ ++iq+   k +  lq ++ ++ +  + ++f   +     s+    g+  gf kk+  s +n+ a   l+ l
  MMETSP1061-20121228|9206_1 1058 AILVATKGTFIVPLIPLGFLYHVIQKWFRKtSTELQRVTSIANSPIF-ADFSQTLS--GTSSIRAYGVQDGFFKKCKNSFDNMNASYLLVQL 1146
                  345666667889999***********998835689999999877654.56665544..345556789999***********99997666555 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 1.1e-08
   TIGR01257  959 taflghngagktttlsiltgll.pptsgtvlvggkdi.etnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrswee.aqlemeamled..tglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplfl 1147
                    + g  g+gk++ +  l  +      g+++v g di e    a+rq + + pq  ++f      +   f +    + w+   ++em  ++ +   gl     e  +++s g ++ l +a +++   k++v+de t+ +d  +  +i  ++    s  t++  +h ++   +  dri ++ +g++    tp  l
  MMETSP1061-20121228|9206_1 1278 IGVCGRTGSGKSSLMIALFRISeIEKDGSIFVDGVDIgEIGTAALRQNISIIPQDPVMFSNTIRYNLDPFATTSDEELWDVlKKVEMGEVIAQlpKGLDDLVAEGGENFSQGQRQLLCIARSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNT-IMDSDRILVLDDGHIAELDTPDNL 1470
                  556788999998776666555414678**********778999****************9865555555666677788997357999888876337*****************99********************************************9999998875.5889*********99988888544 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.1e-05    0.0026      29      95 ..     631     698 ..     621     705 .. 0.80
   2 ?   -1.9   0.0       6.7   4.3e+02      43      79 ..     792     828 ..     777     860 .. 0.80
   3 ?    6.5   0.0     0.017       1.1      34      82 ..    1271    1319 ..    1263    1329 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.1e-05
   TIGR03420  29 lrel.aeakaerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaqllvevlegleqaelva 95 
                 lr++ ++ k ++l+ ++G+ gsGks +L+A+  ++e+ g s +y+p +++++     ++  +q   v+
  MMETSP1061-20121228|9206_1 631 LRNItTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESIGGSKVYIPRSDDEKEADGYISYCTQSPWVV 698
                 555545566778999*******************************9998876656666666665555 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 6.7
   TIGR03420  43 lwGesgsGksHLLqAacaaaeeagksaiylplkelaq 79 
                 + Ge g+G++ +L     ++ ++  s+i+++  ++++
  MMETSP1061-20121228|9206_1 792 IAGEVGQGRTRILVTHHVHVLARCDSVIVMENGTIKH 828
                 789*********9998888888888888877766655 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.017
   TIGR03420   34 eakaerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaqllv 82  
                  + k+++ + ++G +gsGks L+ A+ +  e ++  +i+++  ++ ++ +
  MMETSP1061-20121228|9206_1 1271 TVKGGEKIGVCGRTGSGKSSLMIALFRISEIEKDGSIFVDGVDIGEIGT 1319
                  5667788899***************999888888888888777766665 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.2   0.00095     0.061     620     654 ..     628     662 ..     601     669 .. 0.83
   2 !   12.5   0.1    0.0001    0.0067     821     903 ..     740     821 ..     737     830 .. 0.88
   3 ?    1.0   0.0       0.3        19     623     651 ..    1265    1293 ..    1255    1305 .. 0.83
   4 ?   -1.0   0.0       1.2        76     829     903 ..    1386    1456 ..    1380    1459 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00095
   TIGR00630 620 ennlkdidvsiplglltvitGvsgsGkstLindiL 654
                    l++i+ +i+ g l++i G  gsGks+++  +L
  MMETSP1061-20121228|9206_1 628 VITLRNITTHIKPGSLVAIVGSVGSGKSSMLSAML 662
                 56799999999999999999999999999998877 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 0.0001
   TIGR00630 821 klGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLl.evlqrlvdkGntvvviehnldviksaDyiidl 903
                 ++G+    LsGG   rv La+ +   +t   l ++D+P   +  +  ++L+ + +   v +G t +++ h ++v+  +D +i +
  MMETSP1061-20121228|9206_1 740 EIGERGINLSGGQKARVSLARAMYSAKT--RLLLMDDPLSAVDSHVGEHLFsNAIAGEVGQGRTRILVTHHVHVLARCDSVIVM 821
                 57899999*************9987665..5899********9999999984589999*********************99965 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.3
   TIGR00630  623 lkdidvsiplglltvitGvsgsGkstLin 651 
                  lkd++ +++ g+ + + G  gsGks+L+ 
  MMETSP1061-20121228|9206_1 1265 LKDLSFTVKGGEKIGVCGRTGSGKSSLMI 1293
                  78888888888888888888888888875 PP

  == domain 4    score: -1.0 bits;  conditional E-value: 1.2
   TIGR00630  829 LsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidl 903 
                  +s G  q + +a+ L ++     + ++De t+ +  +  + + +++++   +  tv+ i h l+ i  +D i+ l
  MMETSP1061-20121228|9206_1 1386 FSQGQRQLLCIARSLLRKP---KILVMDEATASIDNETDATIQRMIRENF-SDATVLTIAHRLNTIMDSDRILVL 1456
                  5677778888888887764...5889999999998776665555555544.4579***************99755 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.1   0.00043     0.027     203     236 ..     635     668 ..     598     672 .. 0.78
   2 ?    2.6   0.0      0.19        12     206     230 ..    1272    1296 ..    1264    1310 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00043
   TIGR00450 203 leklkdglklaivGktNvGKSSLlNallkkdrai 236
                   ++k g  +aivG++  GKSS+l a+l +  +i
  MMETSP1061-20121228|9206_1 635 TTHIKPGSLVAIVGSVGSGKSSMLSAMLGEMESI 668
                 467899999******************9887666 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.19
   TIGR00450  206 lkdglklaivGktNvGKSSLlNall 230 
                  +k g k+ + G+t  GKSSL+ al 
  MMETSP1061-20121228|9206_1 1272 VKGGEKIGVCGRTGSGKSSLMIALF 1296
                  56789***************99886 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0085      0.54       6      37 ..     644     675 ..     641     687 .. 0.81
   2 ?    5.9   0.1     0.033       2.1       5      27 ..    1277    1299 ..    1273    1313 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0085
   TIGR00231   6 ivivGhvdvGKstLlnsllknkisiteskpgv 37 
                 ++ivG+v++GKs++l+ +l++  si  sk  +
  MMETSP1061-20121228|9206_1 644 VAIVGSVGSGKSSMLSAMLGEMESIGGSKVYI 675
                 89*****************9988887766555 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.033
   TIGR00231    5 kivivGhvdvGKstLlnsllknk 27  
                  ki++ G+ ++GKs+L++ l + +
  MMETSP1061-20121228|9206_1 1277 KIGVCGRTGSGKSSLMIALFRIS 1299
                  9***************9997766 PP

>> TIGR02525  plasmid_TraJ: plasmid transfer ATPase TraJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.1       2.9   1.8e+02     152     169 ..     644     661 ..     637     666 .. 0.84
   2 !   11.1   0.0   0.00046      0.03     154     177 ..    1280    1302 ..    1266    1315 .. 0.82
   3 ?   -1.5   0.0       3.2     2e+02     143     199 ..    1398    1454 ..    1396    1460 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 2.9
   TIGR02525 152 GlicGetGsGkstllaai 169
                   i G  GsGks++l+a+
  MMETSP1061-20121228|9206_1 644 VAIVGSVGSGKSSMLSAM 661
                 5689*********99886 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00046
   TIGR02525  154 icGetGsGkstllaaiyryiletn 177 
                  +cG tGsGks+l+ a++r   e +
  MMETSP1061-20121228|9206_1 1280 VCGRTGSGKSSLMIALFRI-SEIE 1302
                  8****************95.4444 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 3.2
   TIGR02525  143 eallpkaGlGlicGetGsGkstllaaiyryiletnpdrkivtvedPveyilgseddl 199 
                  ++ll+k  + ++   t s      a+i r i e++ d  ++t+   ++ i++s++ l
  MMETSP1061-20121228|9206_1 1398 RSLLRKPKILVMDEATASIDNETDATIQRMIRENFSDATVLTIAHRLNTIMDSDRIL 1454
                  5777777777777788888888999******************99999999888766 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.1    0.0059      0.38     176     202 ..     642     668 ..     587     673 .. 0.82
   2 ?    2.6   0.0      0.18        12     176     195 ..    1276    1295 ..    1254    1300 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0059
   TIGR03594 176 ikiaiiGrpNvGKStLvNallgeervi 202
                   +ai+G   +GKS+++ a+lge  +i
  MMETSP1061-20121228|9206_1 642 SLVAIVGSVGSGKSSMLSAMLGEMESI 668
                 469*******************98776 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.18
   TIGR03594  176 ikiaiiGrpNvGKStLvNal 195 
                   ki++ Gr  +GKS+L+ al
  MMETSP1061-20121228|9206_1 1276 EKIGVCGRTGSGKSSLMIAL 1295
                  4899************9776 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.2    0.0052      0.33     120     146 ..     639     665 ..     602     672 .. 0.84
   2 ?    3.2   0.0      0.14       9.2     125     143 ..    1278    1296 ..    1259    1309 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0052
   TIGR01420 120 kkrGlilvtGptGsGKsttlAslidyi 146
                 k+  l+ ++G+ GsGKs  l +++ ++
  MMETSP1061-20121228|9206_1 639 KPGSLVAIVGSVGSGKSSMLSAMLGEM 665
                 45679******************9876 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.14
   TIGR01420  125 ilvtGptGsGKsttlAsli 143 
                  i v G tGsGKs  + +l 
  MMETSP1061-20121228|9206_1 1278 IGVCGRTGSGKSSLMIALF 1296
                  6799********9999885 PP

>> TIGR00101  ureG: urease accessory protein UreG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.1       1.2        77       4      26 ..     644     666 ..     642     675 .. 0.87
   2 ?    9.5   0.0    0.0027      0.17       3      59 ..    1277    1335 ..    1276    1345 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 1.2
   TIGR00101   4 igvagpvgsgktaliealtrela 26 
                 + ++g vgsgk++++ a+  e++
  MMETSP1061-20121228|9206_1 644 VAIVGSVGSGKSSMLSAMLGEME 666
                 5799***********99987775 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0027
   TIGR00101    3 kigvagpvgsgktaliealtr..elakkydlavitndiytkedaeflvknsvlpperil 59  
                  kigv+g  gsgk++l+ al r  e++k+ ++ v   di     a +  + s++p++ ++
  MMETSP1061-20121228|9206_1 1277 KIGVCGRTGSGKSSLMIALFRisEIEKDGSIFVDGVDIGEIGTAALRQNISIIPQDPVM 1335
                  8******************8754788999998888888888888777777888877776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        84  (0.0204778); expected 4.1 (0.001)
Passed Fwd filter:                        64  (0.0156021); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              64  [number of targets reported over threshold]
# CPU time: 2.43u 0.21s 00:00:02.64 Elapsed: 00:00:01.47
# Mc/sec: 1343.24
//
Query:       MMETSP1061-20121228|9207_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.23
# Mc/sec: 2547.96
//
Query:       MMETSP1061-20121228|9210_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-98  325.9   0.3    3.4e-97  324.1   0.2    1.7  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.8e-61  206.1   0.3    2.4e-60  202.4   0.2    2.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    4.2e-55  185.2   0.1    1.2e-54  183.7   0.0    1.5  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    2.2e-31  107.0   0.1    3.6e-31  106.3   0.1    1.2  1  TIGR03689 pup_AAA: proteasome ATPase
    3.6e-10   36.8   0.0    5.3e-10   36.3   0.0    1.1  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    9.3e-05   19.4   0.0    0.00013   18.9   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00016   18.6   0.0    0.00028   17.8   0.0    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
    0.00082   16.2   0.1     0.0053   13.5   0.0    1.9  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
     0.0009   16.2   0.0     0.0019   15.1   0.0    1.5  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0018   14.6   0.0      0.003   13.9   0.0    1.3  1  TIGR00763 lon: ATP-dependent protease La
     0.0053   13.2   0.0     0.0081   12.6   0.0    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0055   14.1   0.0     0.0098   13.2   0.0    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
  ------ inclusion threshold ------
      0.014   12.8   0.1       0.03   11.8   0.1    1.4  1  TIGR00678 holB: DNA polymerase III, delta' subunit
      0.016   11.2   0.1      0.066    9.2   0.0    1.8  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
      0.026   11.6   0.1      0.057   10.5   0.0    1.5  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      0.037   10.7   0.1       0.27    7.8   0.0    2.2  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.1   0.2   1.3e-99   3.4e-97      16     290 ..     188     484 ..     176     494 .. 0.89

  Alignments for each domain:
  == domain 1    score: 324.1 bits;  conditional E-value: 1.3e-99
   TIGR01241  16 lvglfll.flrqakgaggsrifslgkskaklleee.kvkvtfkdvaGideakeelveivdfLknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgag..lgg..gndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvkla.................eevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkele 290
                 ++g+++l ++r+ k+ +g+ + + g    k+++++  +  +f+d+ Gid+ak+e++e+vd L+np k++ lGa+ P G+ll GpPGtGkt+la+a+a  agvp++  sGsdfvemfvG Ga+rvr lfe+a ++aP+iifiDe+Da+G++r  g  + g  gnde eqtLnqlL+ mDG++++  v vlaatnr +vLD+aL+rPGrfDr v +++P+  gre+il++h+ k+                    e+vdl++va  t+GfsGa+l+ lvne+a+ a+r+ +++++  + +
  MMETSP1061-20121228|9210_1 188 ILGFYMLiLWRMYKTFSGQ-ANGSGDVPGKVANKNaLPLASFNDIQGIDDAKQEVMELVDTLRNPGKYAILGARAPTGLLLEGPPGTGKTMLARATAAAAGVPLIYASGSDFVEMFVGRGAARVRKLFERANRMAPAIIFIDELDALGKSRDSGnpMMGnrGNDEAEQTLNQLLACMDGLDSTRRVCVLAATNRREVLDTALIRPGRFDRIVKLKLPNAIGRENILRIHSSKLPGFqecrgiddtrvnslglgEKVDLSAVAAVTTGFSGAELEFLVNESAIRAVRRVSSSLRKGDSD 484
                 4555555156666666665.9999*******9998456789**************************************************************************************************************99988443349*******************************************************************9886532244556677777888889********************************998888776655 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.4   0.2   9.5e-63   2.4e-60     117     355 ..     224     482 ..     212     488 .. 0.88

  Alignments for each domain:
  == domain 1    score: 202.4 bits;  conditional E-value: 9.5e-63
   TIGR01242 117 pevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrld....sstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkm.........k........laedvdleelaklteGasGadlkaivteaGmfaireerdkvtmed 355
                 p  s++di G+++  +e+ e v+  l++p  ++ +G   p G+ll GppGtGkt+la+a a  +   +i   gs++v+ ++G Ga  vr++f+ a+  ap+iifide+da++  r      +   G+ e ++tl qlla +dG+d+   v v+aatnr ++ld al+rpGrfdr++++ lp+  Gr +il+ih++k+         +        l e+vdl ++a +t G+sGa+l  +v e+ + a+r+ ++ + + d
  MMETSP1061-20121228|9210_1 224 PLASFNDIQGIDDAKQEVMELVD-TLRNPGKYAILGARAPTGLLLEGPPGTGKTMLARATAAAAGVPLIYASGSDFVEMFVGRGAARVRKLFERANRMAPAIIFIDELDALGKSRDSgnpmMGNRGNDEAEQTLNQLLACMDGLDSTRRVCVLAATNRREVLDTALIRPGRFDRIVKLKLPNAIGRENILRIHSSKLpgfqecrgiDdtrvnslgLGEKVDLSAVAAVTTGFSGAELEFLVNESAIRAVRRVSSSLRKGD 482
                 7789****************998.69**************************************************************************************99865222134567889****************************************************************9874333322222022233333789********************************9988776655 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.7   0.0   4.6e-57   1.2e-54     168     405 ..     219     479 ..     212     514 .. 0.76

  Alignments for each domain:
  == domain 1    score: 183.7 bits;  conditional E-value: 4.6e-57
   TIGR01243 168 ketkvpevtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkree...vt...geve.krvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvd.................ldklaevthgfvgadlaalakeaamaalrrllregk 405
                 +++ +p  +++di g+++a++ + elv+  l+ p  +  lg   p g+ll gppgtgkt+la+a a  ag  +i   g + +  ++g    r+r++f+ a+  ap+iifide+da+   r+    ++   g+ e  + + qll+ mdgl    +v v+ atnr + ld al rpgrfdr ++++ p+  gr++il+ih+ ++p  ++                   l  +a vt gf ga+l  l++e+a++a+rr+ +  +
  MMETSP1061-20121228|9210_1 219 NKNALPLASFNDIQGIDDAKQEVMELVD-TLRNPGKYAILGARAPTGLLLEGPPGTGKTMLARATAAAAGVPLIYASGSDFVEMFVGRGAARVRKLFERANRMAPAIIFIDELDALGKSRDSgnpMMgnrGNDEaEQTLNQLLACMDGLDSTRRVCVLAATNRREVLDTALIRPGRFDRIVKLKLPNAIGRENILRIHSSKLPGFQECRgiddtrvnslglgekvdLSAVAAVTTGFSGAELEFLVNESAIRAVRRVSSSLR 479
                 5557888889999999999999999988.58999999999999999999999999999999999999999999999999999999999999999999999999999999999999988888622223111322213567899999999999999999999999999999999999999999999999999999999999998877766667788888888888888889999999999999999999999999999865322 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.3   0.1   1.4e-33   3.6e-31     177     383 ..     224     420 ..     219     440 .. 0.87

  Alignments for each domain:
  == domain 1    score: 106.3 bits;  conditional E-value: 1.4e-33
   TIGR03689 177 PdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsG......vssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlP 383
                 P  +++di G+d+  +++ + v+  + ++  y   + ++P G+ll GPPG+Gkt++a+a a++ +            ++   G ++++ +vG    ++r +fera + a    P ++f+de+d+l + r sG         d     + qlla +dG++s + v v+ a+nr +++d a++rPGr+d  ++++ P+a + ++il  +  ++lP
  MMETSP1061-20121228|9210_1 224 PLASFNDIQGIDDAKQEVMELVD-TLRNPGKYAILGARAPTGLLLEGPPGTGKTMLARATAAAAGV----------PLIYASGSDFVEMFVGRGAARVRKLFERANRMA----PAIIFIDELDALGKSRDSGnpmmgnRGNDEAEQTLNQLLACMDGLDSTRRVCVLAATNRREVLDTALIRPGRFDRIVKLKLPNAIGRENILRIHS-SKLP 420
                 6679********99999998888.4789999****************************9986544..........357789**********************99887....9****************9944333335677777899******************************************************98774.4566 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.1e-12   5.3e-10     276     427 ..     229     382 ..     220     400 .. 0.76

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 2.1e-12
   TIGR03922 276 akqiGlervkeqvaalkssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidka...LggvlFlDEayaLvekrdgakddfGl.......eaidtLLarlE..ndRdrlvviiAGYekd 427
                 + + G++++k++v  l ++++     a  G   a     lll GPPGtGkt +Ar+ a   aG+ ++        s +d++  ++g  +a+  +l ++a      ++F+DE+ aL + rd  + ++G+       + +++LLa ++  +   r++v+ A  + +
  MMETSP1061-20121228|9210_1 229 NDIQGIDDAKQEVMELVDTLRNPGKYAILG---ARAPTGLLLEGPPGTGKTMLARATAA-AAGVPLIY------ASGSDFVEMFVGRGAARVRKLFERAnrmAPAIIFIDELDALGKSRDSGNPMMGNrgndeaeQTLNQLLACMDglDSTRRVCVLAATNRRE 382
                 556678888888888877776554444444...5556679****************885.68987765......689********************993323579***********9998888888633333335899*****98333456788888876655 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   5.2e-07   0.00013     120     199 ..     265     338 ..     218     365 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 5.2e-07
   TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarkse 199
                 +ll Gp G+Gkt+la++ a+   vp+  a  + + e  +vG     +  kl++ a+    +    ii+ide+d + +  +
  MMETSP1061-20121228|9210_1 265 LLLEGPPGTGKTMLARATAAAAGVPLIYASGSDFVEM-FVGRGAARV-RKLFERAN----RMAPAIIFIDELDALGKSRD 338
                 7899******************************996.9**998775.89999886....56678********9965443 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   1.1e-06   0.00028      10     120 ..     233     336 ..     225     367 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.1e-06
   TIGR02881  10 GleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkal...GGvlfideayslarG 120
                 G+++ k+ + e+        k     +   +    ++++G PGtGkt +ar  a      +v     li +  +d+v  ++G+ a ++r++ ++a      ++fide  +l + 
  MMETSP1061-20121228|9210_1 233 GIDDAKQEVMELVDTLRNPGK---YAILGARAPTGLLLEGPPGTGKTMLARATAAA---AGV----PLIYASGSDFVEMFVGRGAARVRKLFERANrmaPAIIFIDELDALGKS 336
                 566666655555443332222...22333344556899*************98864...333....6899999*****************99988522268******9888653 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.1e-05    0.0053      46     107 ..     261     320 ..     231     323 .. 0.89
   2 ?    0.4   0.0      0.21        53     249     265 ..     323     339 ..     318     350 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.1e-05
   TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvdaavkl 107
                  P  +l+ G+ G Gkt +ar  a  a++P+i    + f e+ +vGr   + vr l + a ++
  MMETSP1061-20121228|9210_1 261 APTGLLLEGPPGTGKTMLARATAAAAGVPLIYASGSDFVEM-FVGRGA-ARVRKLFERANRM 320
                 58889999********************************8.9***86.5689999888776 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.21
   TIGR00390 249 Giifideidkiakkges 265
                  iifide+d + k+ +s
  MMETSP1061-20121228|9210_1 323 AIIFIDELDALGKSRDS 339
                 69********9998754 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   7.4e-06    0.0019      32      68 ..     264     300 ..     254     339 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 7.4e-06
   TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpalek 68 
                  +ll GPPG Gkt la+  a+  gv l  +sg  +  
  MMETSP1061-20121228|9210_1 264 GLLLEGPPGTGKTMLARATAAAAGVPLIYASGSDFVE 300
                 589********************99999999987654 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.2e-05     0.003     329     384 ..     232     293 ..     228     345 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.2e-05
   TIGR00763 329 yglkkvKeRilEylavkklrkk......lkgkilclvGPPGVGKtSlaksiAkalnrkfvrl 384
                  g+++ K+ ++E + + +  +k         + l l GPPG GKt la++ A a +  ++  
  MMETSP1061-20121228|9210_1 232 QGIDDAKQEVMELVDTLRNPGKyailgaRAPTGLLLEGPPGTGKTMLARATAAAAGVPLIYA 293
                 58889999999998887554441111103334699*****************9988776654 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   3.1e-05    0.0081     200     231 ..     252     282 ..     212     289 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.1e-05
   TIGR00368 200 akraleiaaaGghnllllGPPGsGktllakrl 231
                 +k a+  a a    lll GPPG+Gkt+la+  
  MMETSP1061-20121228|9210_1 252 GKYAILGARA-PTGLLLEGPPGTGKTMLARAT 282
                 5555544444.35699************9875 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   3.8e-05    0.0098      24      56 ..     265     297 ..     235     309 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.8e-05
   TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                 + l GP GtGkt la++ a+  + P+++  G +
  MMETSP1061-20121228|9210_1 265 LLLEGPPGTGKTMLARATAAAAGVPLIYASGSD 297
                 5689***********************999976 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   0.00012      0.03      11      37 ..     259     285 ..     253     288 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
   TIGR00678  11 grlahAlLfaGpeGvGkealaealaka 37 
                  r +  lL++Gp+G+Gk++la+a a+a
  MMETSP1061-20121228|9210_1 259 ARAPTGLLLEGPPGTGKTMLARATAAA 285
                 678999*****************9986 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   0.00026     0.066     485     525 ..     261     300 ..     229     304 .. 0.80
   2 ?   -0.6   0.0      0.23        59     263     288 ..     307     332 ..     301     344 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00026
   TIGR02639 485 kPvgsflfvGptGvGktelakqLaeelgvellrfDmseyme 525
                  P+g +l  Gp G Gkt la++ a++ gv l+    s++ e
  MMETSP1061-20121228|9210_1 261 APTG-LLLEGPPGTGKTMLARATAAAAGVPLIYASGSDFVE 300
                 5655.6889**********************9988888877 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.23
   TIGR02639 263 eerlkevveeiekeedailfiDeiht 288
                  +r++++ e  ++   ai+fiDe+ +
  MMETSP1061-20121228|9210_1 307 AARVRKLFERANRMAPAIIFIDELDA 332
                 5799999****************976 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00022     0.057      28      59 ..     254     285 ..     227     288 .. 0.85
   2 ?   -4.0   0.0       5.6   1.4e+03     149     172 ..     372     395 ..     368     397 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00022
   TIGR02397  28 naikknkiahayLfsGprGvGKTsiArilAka 59 
                  ai   +  +  L+ Gp G+GKT +Ar  A a
  MMETSP1061-20121228|9210_1 254 YAILGARAPTGLLLEGPPGTGKTMLARATAAA 285
                 5788899999*****************98876 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 5.6
   TIGR02397 149 vFilaTtelekipetilSRcqrfd 172
                 v +la t+ + +++t l R  rfd
  MMETSP1061-20121228|9210_1 372 VCVLAATNRREVLDTALIRPGRFD 395
                 56899*********9999988886 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.5     9e+02     139     169 ..     115     144 ..     113     171 .. 0.60
   2 ?    7.8   0.0    0.0011      0.27      34      60 ..     256     282 ..     233     287 .. 0.83
   3 ?   -0.5   0.0      0.36        91     129     146 ..     321     337 ..     308     386 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 3.5
   TIGR02928 139 DklvkkeadelLyeLsraeengdlekakvsv 169
                 D++ + + + ++y+L++ ++++d e+  v  
  MMETSP1061-20121228|9210_1 115 DNM-RISPERIVYRLTKESSDTDGENPTVKQ 144
                 555.667778888888887777777666643 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.0011
   TIGR02928  34 ilrgsrpsnvliyGktGtGKtavtkkv 60 
                 il  + p  +l+ G++GtGKt+ ++++
  MMETSP1061-20121228|9210_1 256 ILGARAPTGLLLEGPPGTGKTMLARAT 282
                 566678999*************99876 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.36
   TIGR02928 129 dsliivLDEiDklvkkea 146
                   +ii +DE+D l k+ +
  MMETSP1061-20121228|9210_1 321 APAIIFIDELDALGKS-R 337
                 3457778999999433.2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.39
# Mc/sec: 1780.16
//
Query:       MMETSP1061-20121228|9211_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 305.66
//
Query:       MMETSP1061-20121228|9208_1  [L=1307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.13s 00:00:00.69 Elapsed: 00:00:00.43
# Mc/sec: 4011.85
//
Query:       MMETSP1061-20121228|9214_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 1555.00
//
Query:       MMETSP1061-20121228|9213_1  [L=782]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.30
# Mc/sec: 3440.52
//
Query:       MMETSP1061-20121228|9212_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       560  (0.136519); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.26s 00:00:00.50 Elapsed: 00:00:00.42
# Mc/sec: 1879.27
//
Query:       MMETSP1061-20121228|9218_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 285.10
//
Query:       MMETSP1061-20121228|9216_1  [L=802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       385  (0.0938567); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.30s 00:00:00.60 Elapsed: 00:00:00.35
# Mc/sec: 3024.44
//
Query:       MMETSP1061-20121228|9215_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.20s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1633.37
//
Query:       MMETSP1061-20121228|9217_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   12.1   0.1      0.054   11.5   0.1    1.2  1  TIGR03141 cytochro_ccmD: heme exporter protein CcmD


Domain annotation for each model (and alignments):
>> TIGR03141  cytochro_ccmD: heme exporter protein CcmD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   1.3e-05     0.054      16      45 ..       4      33 ..       3      34 .. 0.95

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.3e-05
   TIGR03141 16 italvLaglivwslldrrrllrelrrlqar 45
                ++a+vLa + ++s ++++ l+r+l+++++r
  MMETSP1061-20121228|9217_1  4 ASAVVLALVAATSNAAKNGLRRQLEKEHKR 33
                89************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.19s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 1592.12
//
Query:       MMETSP1061-20121228|9221_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1217.23
//
Query:       MMETSP1061-20121228|9220_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 2549.28
//
Query:       MMETSP1061-20121228|9222_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-29   98.7   0.0    1.5e-27   94.2   0.0    2.6  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    1.5e-26   91.1   0.0    1.6e-25   87.7   0.0    2.0  2  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    3.6e-26   89.8   0.0    1.7e-25   87.6   0.0    1.9  2  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    1.7e-21   74.3   0.0    4.1e-21   73.1   0.0    1.5  2  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    1.2e-18   65.0   0.0    1.9e-18   64.3   0.0    1.3  1  TIGR01141 hisC: histidinol-phosphate transaminase
    1.1e-16   58.6   0.0    1.5e-11   41.8   0.0    3.1  2  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    6.2e-16   56.0   0.0    1.2e-15   55.1   0.0    1.5  2  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    1.3e-14   51.9   0.0    1.3e-13   48.6   0.0    2.1  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    6.9e-12   42.8   0.0    3.4e-11   40.5   0.0    2.0  2  TIGR03537 DapC: succinyldiaminopimelate transaminase
    2.1e-11   40.7   0.0    1.5e-10   37.9   0.0    1.9  1  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase
    1.4e-06   25.3   0.0    3.7e-06   23.9   0.0    1.6  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
  ------ inclusion threshold ------
      0.034   10.8   0.0       0.05   10.3   0.0    1.1  1  TIGR04181 NHT_00031: aminotransferase, LLPSF_NHT_00031 family


Domain annotation for each model (and alignments):
>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.2   0.0   4.5e-30   1.5e-27      52     263 ..     162     406 ..     148     525 .. 0.69

  Alignments for each domain:
  == domain 1    score: 94.2 bits;  conditional E-value: 4.5e-30
   TIGR03947  52 GgeklraaladrlagG......daekvlvthGsseaiylvltallrPGdevvvvdpayhslselavalgakvrrwplaaer.........dfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesg..avllWdaafadlvydaeplpe..........psa......aadrvisfgtlskafGlpGlrvGWcvaPkdllaelvrlrdyltlslsPlvellaevavehadal 263
                 G ++l + la+r++          ++v vt+G+s+a+yl l+ l++PGdevv+ +p ++  ++  + +g +    pl++e          +++ d d+l  +v++rt+++++n PhnPtG   + +e + + e  + +g   v+l d+ ++ +++  +  ++           +         dr+i+++   k+f  +G +vGWc++Pk ll+ + +l  y+ +  s +++   ++++e ad  
  MMETSP1061-20121228|9222_1 162 GHPNLVNQLARRYSTHmrkdihAMDEVAVTVGASQALYLSLQSLVQPGDEVVLFEPFFDLYVNQVKLAGGTPVFVPLRFEAydettltggEWKLDRDELMRVVSPRTKAIILNSPHNPTGKIFSRAEMEVIAESLDLAGpdCVVLSDEVYKYIIHAPPKDADlqsdsplcpgHTHfaslpgMWDRTITISSAGKTFSATGWQVGWCIGPKRLLSPIHQLLPYVQFCASTVTQEALARSLERADLP 406
                 6666666777777653111111345799****************************98877666666655555555544321122333336899**********************************999999877763379999*9999888865433321111111100222222222569**********************************************999889999999964 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   4.7e-28   1.6e-25      39     322 ..     129     436 ..     114     464 .. 0.76
   2 ?    1.2   0.0     0.088        30     348     399 ..     482     542 ..     465     546 .. 0.75

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 4.7e-28
   TIGR01265  39 GdPsvfgnlrtaeeaeeavadavrsgkfngYapsvGvlaareavaeylskeleaklea.ddvvltsGcsqaielviealanaganiLvPrPgfplYetlakalg.......levrkydl..lpekdweidldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaekl..klliiaDEvYdklvfgd.............atfvplaklaskv.PvlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAlpdilektp......keffekkikvlkenaelvyeelkeip 322
                 G P   +   + ++ +eav d+++s     Y+  +G+++  + +a ++s ++ ++++a d+v +t G+sqa+ l +++l ++g+++++  P f lY  + k  g       l    yd   l++ +w++d del  ++  +t+a++++ P nP+G +fsr  +e ++e         ++++DEvY+ +++                 ++ +a+l  +    +++ +  k +   GW++GW i   pk  l+   ++ l  ++q    ++t+ q+Al   le+++       +++++   +  +  +l+ e+l++  
  MMETSP1061-20121228|9222_1 129 GFPDWLPPKFAVDSLVEAVLDSAQSP--HQYTRPAGHPNLVNQLARRYSTHMRKDIHAmDEVAVTVGASQALYLSLQSLVQPGDEVVLFEPFFDLYVNQVKLAGgtpvfvpLRFEAYDEttLTGGEWKLDRDELMRVVSPRTKAIILNSPHNPTGKIFSRAEMEVIAESLDLAgpDCVVLSDEVYKYIIHAPpkdadlqsdsplcPGHTHFASLPGMWdRTITISSAGKTFSATGWQVGWCI--GPKRLLSP--IHQLLPYVQF--CASTVTQEALARSLERADlpyeghSSYYDYLKAKYTRKRDLLVEALTDAG 436
                 55554444444555566666666554..68*************************987588***********************************98876543333333389999*965699****************************************9999876544115789**********9766667787775554223334444333213699*****************98..56777776..3344444444..467999********998633333256777777777777788888777765 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.088
   TIGR01265 348 kdDvdFceklvkEesvillPgsal.el........enylRitltveksvleealeRikeFc 399
                 ++D   c+ +++E  + ++P+s + +l        + ++R+++    +++e a++ +++  
  MMETSP1061-20121228|9222_1 482 RQDWALCQWMAEEVGLLCIPSSPFfSLdrvkegvsDSFIRVAFCKTDETIEAAAQALRKLK 542
                 679999**************98653332222222257999999999999998888887765 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   4.9e-28   1.7e-25      27     316 ..     119     441 ..     113     461 .. 0.81
   2 ?   -1.1   0.0      0.43   1.5e+02     337     382 ..     488     540 ..     474     541 .. 0.61

  Alignments for each domain:
  == domain 1    score: 87.6 bits;  conditional E-value: 4.9e-28
   TIGR03540  27 kGvdvidlgiGdPdlptpkeivealkkaaekpen..hryPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahlplafvnpGdivlvpdPgyPvykistllaggepyelPlkeen.........dflPdldaipedvlkkakilflnyPnnPtsavadk...effkevvefakeyniivvhdaayseivf.....deykals........flevdgakdvaielhslsktynmtGWrigfavGnkeliaalgkvksnvdsGvfqaiqeaaiaaleeee.......evvkelrkvykkrrdllvealkkiGldvkk 316
                 +  d ++lg G Pd   pk  v++l++a+ ++++  h+y   +G  ++ +++a+ y +++  ++ +  ev   +G+ + +     ++v+pGd v++ +P +  y    +lagg+p  +Pl+ e          ++  d d++   v  ++k + ln P nPt+ + ++   e + e +++a   + +v++d+ y  i++      + ++ s        f +++g  d +i ++s  kt++ tGW++g+ +G k l++ + ++   v   + +  qea   +le+ +       +  + l++ y ++rdllveal + G+ v  
  MMETSP1061-20121228|9222_1 119 QEHDPVNLGQGFPDWLPPKFAVDSLVEAVLDSAQspHQYTRPAGHPNLVNQLARRYSTHMRKDIHAMDEVAVTVGASQALYLSLQSLVQPGDEVVLFEPFFDLYVNQVKLAGGTPVFVPLRFEAydettltggEWKLDRDELMRVVSPRTKAIILNSPHNPTGKIFSRaemEVIAESLDLA-GPDCVVLSDEVYKYIIHappkdADLQSDSplcpghthFASLPGMWDRTITISSAGKTFSATGWQVGWCIGPKRLLSPIHQLLPYVQFCASTVTQEALARSLERADlpyeghsSYYDYLKAKYTRKRDLLVEALTDAGFAVPD 441
                 5668899**********************98875559***********************************************************************************9774222222222455678889999999***************986660005555556666.468999******99987232221112111222333338899*******************************************************99999876522222115566677889***************99854 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.43
   TIGR03540 337 akklleeagvvvtpGvgfGe...sGeG....yirisltvseerlkeaverlkk 382
                 ++ + ee+g+++ p   f +     eG    +ir++  +++e ++ a + l+k
  MMETSP1061-20121228|9222_1 488 CQWMAEEVGLLCIPSSPFFSldrVKEGvsdsFIRVAFCKTDETIEAAAQALRK 540
                 45566666666666665532111223222239999999999999998887765 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.1   0.0   1.2e-23   4.1e-21      52     319 ..     142     433 ..     125     455 .. 0.72
   2 ?   -2.4   0.0         1   3.5e+02     348     393 ..     482     536 ..     468     544 .. 0.65

  Alignments for each domain:
  == domain 1    score: 73.1 bits;  conditional E-value: 1.2e-23
   TIGR01264  52 eavkalkesvdsgkynGyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaiealadaGenvlvPrPGfplyetlakald.......ievklynl..ladedweidlkelesliddktkalivnnPsnPcGsvfsrkhleel...lalaerlklpiladeiyedlvfkg.............atflalaslssevP.ilslgGlakrllvPGWrlGWliihdrkgvlrdvkdGlkklsqrilGpntlvqGalkeilrkt..P....qeyfdgvvsvlesnadlvyeala 319
                 + v+a+ +s +s     y+   G+++  +++a++y+ +  ++    d+v ++ G+s+al l++++l+++G++v++ +P f ly   +k  +       +  + y+   l++ +w++d +el  ++  +tka+i+n P nP+G +fsr  +e +   l la   ++ +l+de+y+ +++                 ++  asl       +++    k +   GW++GW i   r   l+ +++ l  +      ++t+ q al   l+++  P     +y+d++  +   + dl+ eal+
  MMETSP1061-20121228|9222_1 142 SLVEAVLDSAQS--PHQYTRPAGHPNLVNQLARRYSTHMRKDIHAMDEVAVTVGASQALYLSLQSLVQPGDEVVLFEPFFDLYVNQVKLAGgtpvfvpLRFEAYDEttLTGGEWKLDRDELMRVVSPRTKAIILNSPHNPTGKIFSRAEMEVIaesLDLAGPDCV-VLSDEVYKYIIHAPpkdadlqsdsplcPGHTHFASLPGMWDrTITISSAGKTFSATGWQVGWCIGPKR--LLSPIHQLLPYVQ---FCASTVTQEALARSLERAdlPyeghSSYYDYLKAKYTRKRDLLVEALT 433
                 334444444333..468999****************88888888899************************************875553322222222566788755599*************************************998755222667776665.79*********987677888888877755666677766554257788888************996444..4444444332221...233445555555554433112111155666666666666666666655 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1
   TIGR01264 348 ksdvefveklveeesvfvlPgsif.el........Pgylrvvltvpkavleeavs 393
                 ++d  +++ + ee  + ++P+s f +l         +++rv      +++e a++
  MMETSP1061-20121228|9222_1 482 RQDWALCQWMAEEVGLLCIPSSPFfSLdrvkegvsDSFIRVAFCKTDETIEAAAQ 536
                 5788889999999999999998762221111111135666666666666666655 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   5.7e-21   1.9e-18      37     279 ..     142     434 ..     135     463 .. 0.85

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 5.7e-21
   TIGR01141  37 kvkealkeelkklhrYpdpq.alelkealakylg.......veeenillgnGsdelielliraflepgdavlvleptysmYevsakiagaevkevplked...........gqedleavleaakekvklvflasPnnPtGnllkreeiekvleev..e..dalVVvDeAYieFsee.................asvlellaeypnlvvlrTlSKafgLAglRvGyaianaeiiealekvra..pynvsslaleaavaalrdsd........kiektveevkkererlleelkk 279
                 +++ea+ +++++ h+Y  p  + +l ++la++++         ++++++++G+ +++ l ++++++pgd+v+ +ep + +Y   +k+ag   + vpl+ +           ++ d +++  +++ ++k + l sP+nPtG++++r+e+e ++e+   +  d++V+ De Y    +                  +++++l   ++  +++ +  K f+  g  vG  i+ + + + ++++ +   +  s++++ea  ++l+ +d        ++    ++  ++r+ l e+l++
  MMETSP1061-20121228|9222_1 142 SLVEAVLDSAQSPHQYTRPAgHPNLVNQLARRYSthmrkdiHAMDEVAVTVGASQALYLSLQSLVQPGDEVVLFEPFFDLYVNQVKLAGGTPVFVPLRFEaydettltggeWKLDRDELMRVVSPRTKAIILNSPHNPTGKIFSRAEMEVIAESLdlAgpDCVVLSDEVYKYIIHAppkdadlqsdsplcpghTHFASLPGMWDRTITISSAGKTFSATGWQVGWCIGPKRLLSPIHQLLPyvQFCASTVTQEALARSLERADlpyeghssYYDYLKAKYTRKRDLLVEALTD 434
                 5788899999999***99973579********999999999999**********************************************9999998765556678888899999999999**************************9999888654357999******98777768899**********99999999999************************************99763368999999999999999877655555545556666666666666666665 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.0   4.3e-14   1.5e-11     113     296 ..     238     442 ..     118     464 .. 0.65
   2 !    9.4   0.0   0.00031       0.1     309     356 ..     483     538 ..     452     539 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 4.3e-14
   TIGR03539 113 vayPtyevgarlagaeavaaddlteldpekvkliwlnsPanPtGrvlsveelrkvvalarer..gvvvasdecylelgWege...........avsvldpevcggdlegllavhslskrsnlagyragfvaGdealvaellevrkhaGlmvpaPvqaamvaalad.....dehv...aeqkeryaarrellkaalekaGfriehs 296
                 + + +y+ ++   g  ++  d+l ++ + ++k i lnsP nPtG++ s  e++ + +       + vv sde y  +                 +   +     g  +  +++ s  k+   +g++ g+  G + l++ + +   +  +  ++ +q+a++ +l+      + h       k++y+++r+ll +al++aGf +   
  MMETSP1061-20121228|9222_1 238 LRFEAYDETTLTGGEWKLDRDELMRVVSPRTKAIILNSPHNPTGKIFSRAEMEVIAESLDLAgpDCVVLSDEVYKYIIHAPPkdadlqsdsplCPGHTHFASLPGMWDRTITISSAGKTFSATGWQVGWCIGPKRLLSPIHQLLPYVQFCASTVTQEALARSLERadlpyEGHSsyyDYLKAKYTRKRDLLVEALTDAGFAVPDY 442
                 223333333333334444555566665678899*******************99988765441169********999887665666774442222233333445777889*************************************************99886411222334311145699******************99654 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00031
   TIGR03539 309 daretvdrlae.lGilvaPGd.fygea......gkefvrvaltatderiaaaverl 356
                 + ++  +++ae +G+l+ P + f++ +      +++f+rva+  tde i+aa++ l
  MMETSP1061-20121228|9222_1 483 QDWALCQWMAEeVGLLCIPSSpFFSLDrvkegvSDSFIRVAFCKTDETIEAAAQAL 538
                 557777888853699998875455432111222568****************9977 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   0.0   3.6e-18   1.2e-15      27     291 ..     119     401 ..     113     496 .. 0.72
   2 ?   -2.5   0.0       1.1   3.7e+02     337     393 ..     483     540 ..     477     541 .. 0.75

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 3.6e-18
   TIGR03538  27 adleeialsiGePkhatPafvlealvenleelskyPttkGlpelreaiaeWlerrfelpag..vdperqvlPvnGtrealfafvqavidraekalvvlPnPfyqiyeGaallagaepyflnctae.........ngfkpdfdavpeevWkrvqllfvcsPgnPtGavlsleelkklleladky..dfiiasdecyselyl....d...eaeaPv..GlleaaaelGrddfkrllvfhslskrsnvPGlrsGfvaGdaellkeflryrtyhGcampiavqlasiaaWe 291
                 +++++++l  G P   +P+f +++lve + + ++ P+    p+    +++ l rr++ +    +++ ++v    G+ +al+   q+++++ ++  vvl +Pf+ +y     lag++p+f++   e          ++k d d + + v  r++ + ++sP+nPtG+++s  e++ + e  d    d ++ sde y  +      d   ++++P+  G  + a   G   + r ++ +s  k  ++ G + G+  G   ll+   +   y   + +  +q+a  +  e
  MMETSP1061-20121228|9222_1 119 QEHDPVNLGQGFPDWLPPKFAVDSLVEAVLDSAQSPHQYTRPAGHPNLVNQLARRYSTHMRkdIHAMDEVAVTVGASQALYLSLQSLVQPGDE--VVLFEPFFDLYVNQVKLAGGTPVFVPLRFEaydettltgGEWKLDRDELMRVVSPRTKAIILNSPHNPTGKIFSRAEMEVIAESLDLAgpDCVVLSDEVYKYIIHappkDadlQSDSPLcpGHTHFASLPG--MWDRTITISSAGKTFSATGWQVGWCIGPKRLLSPIHQLLPYVQFCASTVTQEALARSLE 401
                 56799***********************9999999999999999999999999***876544599***********************99875..88899*******************9854321111111114566788899999999******************9999888777666432289********9876512211112233343113333333333..46678888888888888888888888888888888888888766666666666555544 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.1
   TIGR03538 337 ddeafaralyeeenvkvlpGr.ylsreaegvnPGegrvrlalvaeleecveaaerikk 393
                 +d a+++ + ee  + ++p + ++s +  +    + ++r+a+    e+ + aa+ ++k
  MMETSP1061-20121228|9222_1 483 QDWALCQWMAEEVGLLCIPSSpFFSLDRVKEGVSDSFIRVAFCKTDETIEAAAQALRK 540
                 6778888888888888888755888888888888999999998777766667777765 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.6   0.0   3.8e-16   1.3e-13      60     239 ..     177     397 ..     115     456 .. 0.76

  Alignments for each domain:
  == domain 1    score: 48.6 bits;  conditional E-value: 3.8e-16
   TIGR01140  60 yygld...aesvlavnGaqeaiql.lprllapkrv.lvlaptyseyaralraagaevvels..................dleelaael.eeadllvvvnPnNPtGrllekeellalaerlkarggllvv..DEAFidftpae.slaalaea................lpglvVlrSltKffglaGlRlGfvvAepallerlkealgpWsvngpAqavgeaala 239
                 +++ d    ++v ++ Ga +a++l l++l++p+++ ++++p +  y ++++ ag ++v+++                  d +el++ +  +++++++  P+NPtG++++++e++ +ae+l+ +g  +vv  DE + ++ +a  + a+l+++                 ++ + + S +K+f+  G  +G++++++ ll  ++++l+   v   A  v ++ala
  MMETSP1061-20121228|9222_1 177 HMRKDihaMDEVAVTVGASQALYLsLQSLVQPGDEvVLFEPFFDLYVNQVKLAGGTPVFVPlrfeaydettltggewklDRDELMRVVsPRTKAIILNSPHNPTGKIFSRAEMEVIAESLDLAGPDCVVlsDEVYKYIIHAPpKDADLQSDsplcpghthfaslpgmWDRTITISSAGKTFSATGWQVGWCIGPKRLLSPIHQLLPY--VQFCASTVTQEALA 397
                 332223337899************9******999868889*************************************999999988887899999************************998886555445****877665544444433334445555556655557889******************************999984..77778888887777 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0     1e-13   3.4e-11       5     282 ..     126     439 ..     124     461 .. 0.71
   2 ?   -3.4   0.0       2.3   7.8e+02     325     344 ..     516     535 ..     476     540 .. 0.67

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 1e-13
   TIGR03537   5 fGtGdpkeptddfirkalldavpevsqypsvlGekalreaiagylerrfgvkldpda....evlpsaGskeaifhlplafldpeeerkkviygtpgypvyerGalfaggealkvklkked.........gflleldaveeailretkivwinyphnptGaeapasylkevaela..reygiilasdecyaeiysee.........kpa.......svlevglenvlafhslskrsGmtGyrsgflaGdeelvsalrklrasvGvaspefvqaaataawsd.....dahva...errkifkrkrdlfleflakkGlea 282
                 +G G p    ++f   +l++av + +q p    + a    + + l rr++ ++  d     ev  + G+ +a++    ++++   +  +v++ +p +  y    + agg ++ v l+ e          ++ l+ d++ + +  +tk + +n phnptG + +++ ++ +ae       + +++sde y  i +           +p        + l    ++++++ s  k    tG++ g   G ++l+s +++l + v  +  +  q+a + + +      + h       +  ++rkrdl++e l+ +G+ +
  MMETSP1061-20121228|9222_1 126 LGQGFPDWLPPKFAVDSLVEAVLDSAQSPHQYTRPAGHPNLVNQLARRYSTHMRKDIhamdEVAVTVGASQALYLSLQSLVQ---PGDEVVLFEPFFDLYVNQVKLAGGTPVFVPLRFEAydettltggEWKLDRDELMRVVSPRTKAIILNSPHNPTGKIFSRAEMEVIAESLdlAGPDCVVLSDEVYKYIIHAPpkdadlqsdSPLcpghthfASLPGMWDRTITISSAGKTFSATGWQVGWCIGPKRLLSPIHQLLPYVQFCASTVTQEALARSLERadlpyEGHSSyydYLKAKYTRKRDLLVEALTDAGFAV 439
                 5777788778888889999999998888888888888888888888888877665541122777888999988755555555...667899***********************99876322222333256799999999999****************9999888877766541134689********98875431112232223321111111234445799999999999999999999999999999999999999988888888887755444321122255654111456778899999999999888765 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.3
   TIGR03537 325 eeeyvrvalvptleeceeai 344
                 ++ ++rva+  t e  e a 
  MMETSP1061-20121228|9222_1 516 SDSFIRVAFCKTDETIEAAA 535
                 56778888887777776665 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.0   4.3e-13   1.5e-10     175     320 ..     200     365 ..     142     371 .. 0.76

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 4.3e-13
   TIGR03801 175 lkaneLlkkgDkialllPiftPyleipeleryd..levvkikadeakedgkatwqytdkelekLkdpkikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvygtfvd......dfrs.........llaelp...antilvysfskyfgatGWrlg 320
                 l  ++L++ gD++ l  P f  y++  +l+     +  ++ +a ++++ +   w+   +el ++  p+ ka+++  P nP++   s++ +e +a+ ++   pd ++l+D+vy    +      d +s          +a+lp     ti++ s  k f atGW++g
  MMETSP1061-20121228|9222_1 200 LSLQSLVQPGDEVVLFEPFFDLYVNQVKLAGGTpvFVPLRFEAYDETTLTGGEWKLDRDELMRVVSPRTKAIILNSPHNPTGKIFSRAEMEVIAESLDLAGPDCVVLSDEVYKYIIHappkdaDLQSdsplcpghtHFASLPgmwDRTITISSAGKTFSATGWQVG 365
                 344689***********************977622666677888888878889***********************************************************876542222223333222222222466666333579999999999999999998 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.1e-08   3.7e-06      63     332 ..     149     439 ..     112     447 .. 0.69

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.1e-08
   TIGR03542  63 aseetfrGyGpeqGldllreaiaeeeykgr....idpeeifisdGakcdv.arllelfgsdktvavqdPvyPvyvdsavlaGragvld..ddgkykkivylpc...tkenefiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvd...yakendslilfdaayeafis....dpsl.......P.ksiy.eiegakecaieirsfsktlGftGvrlgytvvPkelkvedgeslkklWerllctkfnGaslivqraaeavlakeglqqi.keaisyymenarilrkaleaaglkv 332
                  s+++   y    G + l +++a+++ +         +e+ ++ Ga   +   l++l+++ + v + +P +  yv+  +laG + v+     + y + +       ++ +e++  + + + ++ i+l sP nPtG + ++++++ + +    a   d ++l d  y+  i+    d +l       P ++ +  ++g    +i i s  kt   tG ++g+ + Pk l     ++l    +   +t    a  +++    a l  eg  +  + + ++y ++ ++l +al++ag+ v
  MMETSP1061-20121228|9222_1 149 DSAQSPHQYTRPAGHPNLVNQLARRYSTHMrkdiHAMDEVAVTVGASQALyLSLQSLVQPGDEVVLFEPFFDLYVNQVKLAGGTPVFVplRFEAYDETTLTGGewkLDRDELMRVV-SPR-TKAIILNSPHNPTGKIFSRAEMEVIAEsldLA-GPDCVVLSDEVYKYIIHappkDADLqsdsplcPgHTHFaSLPGMWDRTITISSAGKTFSATGWQVGWCIGPKRLLSPI-HQLLPYVQFCASTVTQEA--LARSLERADLPYEGHSSYyDYLKAKYTRKRDLLVEALTDAGFAV 439
                 445556678888999999999998765544566344689****9987765279*****************************9998875566778776655542112334444444.333.68999*************99987665511054.4689********99986222233332222112344444369999999**************************98433.333333333333333332..22223344444444444404456789999999999999999988 PP

>> TIGR04181  NHT_00031: aminotransferase, LLPSF_NHT_00031 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00015      0.05      34      99 ..     173     238 ..     165     253 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00015
   TIGR04181  34 efEeklaeytgakkavavvnGt.aaLhlalkllgvkegdeVivpaltFvAtanaisylgaePvfvdv 99 
                 ++ +++ + ++a   vav+ G+  aL l+l+ l v++gdeV++ +  F   +n ++ +g +Pvfv  
  MMETSP1061-20121228|9222_1 173 RYSTHMRKDIHAMDEVAVTVGAsQALYLSLQSL-VQPGDEVVLFEPFFDLYVNQVKLAGGTPVFVPL 238
                 66677888888889999999862699**99976.**********999*****************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.56
# Mc/sec: 1296.32
//
Query:       MMETSP1061-20121228|9223_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0046   14.2   0.0     0.0075   13.5   0.0    1.3  1  TIGR01978 sufC: FeS assembly ATPase SufC


Domain annotation for each model (and alignments):
>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.8e-06    0.0075      28      51 ..       6      29 ..       2      46 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.8e-06
   TIGR01978 28 vhaimGpnGsGkstLskvlaghek 51
                ++++mGp GsGkst ++++  h +
  MMETSP1061-20121228|9223_1  6 IQIVMGPAGSGKSTYCQAMQYHAS 29
                789**************9988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       237  (0.0577767); expected 82.0 (0.02)
Passed bias filter:                      227  (0.0553389); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1337.49
//
Query:       MMETSP1061-20121228|9219_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-30  103.9   0.2    6.2e-28   95.7   0.0    2.1  2  TIGR00235 udk: uridine kinase
    1.6e-05   22.3   0.2     0.0001   19.6   0.0    2.0  2  TIGR00554 panK_bact: pantothenate kinase
  ------ inclusion threshold ------
       0.03   10.6   0.1      0.046   10.0   0.1    1.2  1  TIGR01804 BADH: betaine aldehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00235  udk: uridine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0011       1.5       6      31 ..      47      72 ..      41      79 .. 0.86
   2 !   95.7   0.0   4.5e-31   6.2e-28      33     185 ..      96     244 ..      88     259 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0011
   TIGR00235  6 tiiigiaGasgsGkttvaekivellk 31
                 i+ig+a  sg Gk+t ++++++ ++
  MMETSP1061-20121228|9219_1 47 PIVIGVAADSGCGKSTFMRRLTSIFG 72
                49*****************9998776 PP

  == domain 2    score: 95.7 bits;  conditional E-value: 4.5e-31
   TIGR00235  33 ekivlisqDnyYkdlsdkelaerkkinfDhPdaldldlllehlknLkkgkavdvPvYdyvehtrkketvkvepkkvvileGilllvderlrdlldlkifvdtdldirlirrlerDieerGrsldsvikqyrkvvrpmyekfveptkkyaDlii 185
                   +++i+ D y+ +  d++  +++ +   +P   + dl+++ +++Lk+g++v  P+Y++v+ t  +   ++ep+ ++i eG+ ++ der+rdlld+ +++d + +++l  +++rD+eerG sl+s+++   ++ +p +  +++p+kk aD+ii
  MMETSP1061-20121228|9219_1  96 DLTTVICLDDYHLN--DRNGRKESGLTALNPLENNFDLMFDQVSALKSGETVSKPIYNHVNGTLDT-PETIEPTPIIIFEGLHPMHDERVRDLLDFTLYLDISDEVKLNWKIQRDMEERGHSLESIMASI-EARKPDFDAYIDPQKKDADMII 244
                 55678888888644..4444445556666799999**************************99743.44689*******************************************************987.568******************9 PP

>> TIGR00554  panK_bact: pantothenate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.066        91      79     102 ..      47      70 ..      38      73 .. 0.88
   2 !   19.6   0.0   7.3e-08    0.0001     146     239 ..     131     211 ..      88     247 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.066
   TIGR00554  79 pyiisiaGsvavGksttarilqkl 102
                 p +i++a     Gkst  r l ++
  MMETSP1061-20121228|9219_1  47 PIVIGVAADSGCGKSTFMRRLTSI 70 
                 99**************99988765 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 7.3e-08
   TIGR00554 146 klvkfladlksGkdnvtapvyshltydviedkfevvekadilileGlnvlqsgtdkddetdrvfvsdfvdfsiyvdaeekllktwyierflklr 239
                  +   ++ lksG  +v  p+y h+      d+ e++e + i+i+eGl  +    ++        v d++df++y+d  ++   +w i+r +  r
  MMETSP1061-20121228|9219_1 131 LMFDQVSALKSGE-TVSKPIYNHVNG--TLDTPETIEPTPIIIFEGLHPM----HD------ERVRDLLDFTLYLDISDEVKLNWKIQRDMEER 211
                 46778999****6.7999*****864..568999************9744....32......2488**********************977666 PP

>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   3.3e-05     0.046     156     204 ..       8      57 ..       4      76 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.3e-05
   TIGR01804 156 PalaaGnalvlkPseitPltalkvaelle.eaGlPkGvfnvvlGkgaevG 204
                  al+aG+   + Ps  tP t + v    + +  lP+Gv  +v G+ a+ G
  MMETSP1061-20121228|9219_1   8 AALTAGSVAAFAPSAFTPRTNMGVSSSSSlNMALPEGVKPIVIGVAADSG 57 
                 69**********************976543899************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1806.89
//
Query:       MMETSP1061-20121228|9225_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-40  135.3   0.1    4.5e-33  111.8   0.0    2.2  2  TIGR01408 Ube1: ubiquitin-activating enzyme E1
      7e-27   92.0   0.0    4.8e-26   89.2   0.0    2.1  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    1.5e-20   71.5   0.4    1.2e-19   68.5   0.0    2.0  2  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    2.8e-18   64.3   0.0    4.4e-18   63.7   0.0    1.2  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
    6.7e-13   46.4   0.0    1.7e-12   45.1   0.0    1.6  1  TIGR03736 PRTRC_ThiF: PRTRC system ThiF family protein
    4.6e-09   33.1   0.0    7.1e-09   32.4   0.0    1.2  1  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
     0.0032   14.7   0.0     0.0048   14.1   0.0    1.2  1  TIGR00065 ftsZ: cell division protein FtsZ
      0.009   12.9   0.0      0.014   12.3   0.0    1.2  1  TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein
  ------ inclusion threshold ------
      0.027   11.2   0.0      0.043   10.5   0.0    1.2  1  TIGR01035 hemA: glutamyl-tRNA reductase
      0.037   10.8   0.0      0.057   10.2   0.0    1.2  1  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family


Domain annotation for each model (and alignments):
>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.8   0.0   1.1e-35   4.5e-33     417     599 ..      87     275 ..      84     280 .. 0.89
   2 !   21.4   0.0   2.4e-08   9.7e-06     809     988 ..     290     473 ..     279     479 .. 0.69

  Alignments for each domain:
  == domain 1    score: 111.8 bits;  conditional E-value: 1.1e-35
   TIGR01408 417 ledlkvflvGaGaiGcellknlallGvatgkkGkitvtdddlieksnlnrqflfrprdigkaksevaasavavinprlkieayqnrvgpetetifddefyeklsvvvnaldnvearlyvdsrclffek..............PllesGtlGtkgntqvvvPhltesygssrd..PPekeiPlctlksfPaaiehtiawa 599
                 l +++v++vGaG +Gce+lk+la+ G++     ++ v d d i+ +nlnrqflfr++d+g  k+evaa  +    p ++++a+   +  +     d  fy   +v+++ ldnvear++++s  +                  P+++ Gt G  g+++v++P +t  +++s d  PP++++Plct+ + P++ eh+ia+a
  MMETSP1061-20121228|9225_1  87 LSKARVLVVGAGGLGCEILKDLAMSGIT-----NVHVIDLDTIDVTNLNRQFLFRQKDVGSSKAEVAAAFINERCPWMNVTAHHGMIQDK-----DPSFYAGFNVILSGLDNVEARRWLNSTVVGLVEvdedgdptdpesiiPIIDGGTEGFSGQARVILPRITSCFECSLDafPPQRNFPLCTIAETPRKPEHCIAYA 275
                 56789*********************97.....689********************************99999999*******9988765.....678***********************9875321122333333344449***************************99889**********************99 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 2.4e-08
   TIGR01408 809 dddsnyhidfitaasnlraknysiepadrlktkfiaGkiiPaiatstavvsGlvalelvkvvdGkkkveaykntflnlaiplfsfaepleskkvkvrdkaitkiwdryvlkgdltlrelidalkkekG...leatmvssGvkllyasllp....khaerlklkvselvkdvtkkkl.epyrkdlvvev 988
                 d ds + +  +   +  ra +y+i+ +  + t  +   iiPa+a++ a+vs   +le vk++       +  nt++    +  +++++   ++       + k     ++  ++tl+eli  l + +G   l a ++++  klly +  p      +  l++ +selv++  +  + +p  ++  +++
  MMETSP1061-20121228|9225_1 290 DKDSPEDMTWVYERALERASKYNIDGVTYMLTMGVVKNIIPAVASTNAIVSAACVLEAVKILSF---CSQTLNTYMMYMGSEGVYSHTFVYERKEDCPVCTSK-VKTITVGPKTTLNELIVELCDADGdlrLRAPSMTTAGKLLYMQKPPalnaSTRPNLDKALSELVEEGEEIAVtDPVLQHAHLSL 473
                 67888888888889999********************************************986...344445555443333344444333332222222232.334556668888888877766665555788888888899998776644224455689999999988766554246666555555 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.2   0.0   1.2e-28   4.8e-26      19     180 ..      87     261 ..      84     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 89.2 bits;  conditional E-value: 1.2e-28
   TIGR02356  19 lleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeevtaenleelieqvdlvlDctDnfktrylindace..............aagkPlisaavvgfeGqvavldsskgpclrcllpeapaadtaksCae 180
                 l++++vl++GaGgLg+++++ la  G+ +++++D D++d+ Nl+rq lf+++dv+ +K+e+aa  ++e  + ++v+a +  +++++  +  +  +++l + Dn+++r  +n + +              +  +P+i ++  gf+Gq  v+ ++ ++c+ c l   p + + + C+ 
  MMETSP1061-20121228|9225_1  87 LSKARVLVVGAGGLGCEILKDLAMSGITNVHVIDLDTIDVTNLNRQFLFRQKDVGSSKAEVAAAFINERCPWMNVTAHHGMIQDKD-PSFYAGFNVILSGLDNVEARRWLNSTVVglvevdedgdptdpESIIPIIDGGTEGFSGQARVILPRITSCFECSLDAFPPQRNFPLCTI 261
                 7899*************************************************************************999998877.567899***************99987652222222222222234589********************************9999999976 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0     3e-22   1.2e-19      22     134 ..      87     198 ..      83     203 .. 0.95
   2 ?    0.8   0.1      0.14        56     188     240 .]     334     386 ..     319     386 .. 0.84

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 3e-22
   TIGR02355  22 lkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinaklddeelaaliakhdvvvdctdnvevrnqlnrq 134
                 l +++vl+vG+GGlGc   + la +G+ ++ ++d dt++++nl+rq l ++ ++g  k e a++ ++e  p++++++    ++d++  ++ a ++v++   dnve r  ln +
  MMETSP1061-20121228|9225_1  87 LSKARVLVVGAGGLGCEILKDLAMSGITNVHVIDLDTIDVTNLNRQFLFRQKDVGSSKAEVAAAFINERCPWMNVTAHHGMIQDKD-PSFYAGFNVILSGLDNVEARRWLNST 198
                 6789*************************************************************************999999887.6799*****************99976 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.14
   TIGR02355 188 pvvGvvGslqaleaikvllkiGkelaGkllildalsleirelkllknaeckvc 240
                     +v +   lea+k+l    ++l+  ++ + +  +    +   ++ +c+vc
  MMETSP1061-20121228|9225_1 334 STNAIVSAACVLEAVKILSFCSQTLNTYMMYMGSEGVYSHTFVYERKEDCPVC 386
                 44568888899*************99999999998888888999999999998 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   1.1e-20   4.4e-18      19     132 ..      87     200 ..      82     206 .. 0.94

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 1.1e-20
   TIGR02354  19 lkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqq.ykvsdvGkkktealkeqiseinPyveieiidekideenleklfkdadivieafdnaeakallvnavl 132
                 l ka+v ++G GGlG ++  +la +Gi ++ ++d d ++++nlnrq  ++ +dvG  k+e     i+e  P++++ +    i++++  ++++  ++++  +dn ea+  l  +v 
  MMETSP1061-20121228|9225_1  87 LSKARVLVVGAGGLGCEILKDLAMSGITNVHVIDLDTIDVTNLNRQFlFRQKDVGSSKAEVAAAFINERCPWMNVTAHHGMIQDKD-PSFYAGFNVILSGLDNVEARRWLNSTVV 200
                 889*******************************************63789*******************************9988.68*****************999988875 PP

>> TIGR03736  PRTRC_ThiF: PRTRC system ThiF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0     4e-15   1.7e-12       8     199 ..      86     268 ..      80     280 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 4e-15
   TIGR03736   8 lskkvkvvlvGaGGtGsqllegLarlhkalkalGhpaGlkvtvlDdDtvseanvgRq.afapadvGankaivlvqRvnqll.gldWeakperleveealssa..dlvigavDnrkaRkailealeegssGarywLDlGnrkddgqvilGev...ssrkvgeaklrlPtvgelfPelidakldeeDdaPsCslaeaLakq 199
                 l +k +v++vGaGG G ++l+ La         G     +v+v+D Dt+  +n+ Rq +f   dvG++ka+v    +n+    ++ +a+  +++ ++    a  +++++  Dn +aR+ +++++     G    +D   + +d   i+  +   ++   g+a++ lP ++  f   +da   ++ + P C++ae+  k 
  MMETSP1061-20121228|9225_1  86 LLSKARVLVVGAGGLGCEILKDLAM-------SGIT---NVHVIDLDTIDVTNLNRQfLFRQKDVGSSKAEVAAAFINERCpWMNVTAHHGMIQDKDPSFYAgfNVILSGLDNVEARRWLNSTVV----GL-VEVDEDGDPTDPESIIPIIdggTEGFSGQARVILPRITSCFECSLDA-FPPQRNFPLCTIAETPRKP 268
                 556789**************99863.......4555...89****************558899****************99559999*9999998665554456*****************9996....44.33454444444444443330004666999999999999999999998.5599999999999986665 PP

>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   1.7e-11   7.1e-09     334     416 ..      86     165 ..      79     169 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.7e-11
   TIGR01381 334 vlssvkvlllGaGtlGcqvarvllGyGvrhitfvdngkvsfsnPvrqslynfedcleggegkaetaakalkrifPaieasgvr 416
                 +ls+ +vl++GaG lGc++ + l   G+ ++  +d  ++ ++n  rq l+  +d+   g  kae aa+ +++  P ++ ++++
  MMETSP1061-20121228|9225_1  86 LLSKARVLVVGAGGLGCEILKDLAMSGITNVHVIDLDTIDVTNLNRQFLFRQKDV---GSSKAEVAAAFINERCPWMNVTAHH 165
                 58999**********************************************9997...677****************999985 PP

>> TIGR00065  ftsZ: cell division protein FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.2e-05    0.0048      17      58 ..      89     131 ..      82     144 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.2e-05
   TIGR00065  17 kakikVvGvGGgGnNavnrlveeevegvefiavNt.DaQaLkk 58 
                 ka++ VvG GG G+ ++++l ++++++v++i + t D+ +L++
  MMETSP1061-20121228|9225_1  89 KARVLVVGAGGLGCEILKDLAMSGITNVHVIDLDTiDVTNLNR 131
                 7999***************************998866666655 PP

>> TIGR02822  adh_fam_2: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.3e-05     0.014     203     284 ..      65     149 ..      50     173 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.3e-05
   TIGR02822 203 klalalgaasaqgaadrppepl..daailfapagelvlpalealdrggvlavagihltdvpdlnyqr.elfrerqirsvtsntra 284
                  +a + ga  +++   + p pl   a +l   ag+l    l+ l   g+  v  i l  +   n +r  lfr++++ s  ++  a
  MMETSP1061-20121228|9225_1  65 PFANEEGALPIGEFEPAAPHPLlsKARVLVVGAGGLGCEILKDLAMSGITNVHVIDLDTIDVTNLNRqFLFRQKDVGSSKAEVAA 149
                 5677778888888888889998445679*************************99997666555554169******998877655 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00011     0.043     178     212 ..      87     121 ..      82     144 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
   TIGR01035 178 LkgkkvlliGaGemaeLvakhLkekgvkkvlilnR 212
                 L++++vl++GaG +++ + k L+  g+++v++++ 
  MMETSP1061-20121228|9225_1  87 LSKARVLVVGAGGLGCEILKDLAMSGITNVHVIDL 121
                 7899****************************975 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00014     0.057     159     189 ..      87     118 ..      81     140 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00014
   TIGR04046 159 lpdGavlvvGsGqsGaqiaedlhlag.rkvhl 189
                 l++  vlvvG+G  G+ i  dl ++g  +vh+
  MMETSP1061-20121228|9225_1  87 LSKARVLVVGAGGLGCEILKDLAMSGiTNVHV 118
                 67889*******************99335664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 1923.84
//
Query:       MMETSP1061-20121228|9224_1  [L=995]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (995 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.39
# Mc/sec: 3367.41
//
Query:       MMETSP1061-20121228|9226_1  [L=1012]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 3610.08
//
Query:       MMETSP1061-20121228|9227_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 2688.18
//
Query:       MMETSP1061-20121228|9228_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1664.01
//
Query:       MMETSP1061-20121228|9229_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-204  676.5   0.0   3.2e-204  676.3   0.0    1.1  1  TIGR00190 thiC: thiamine biosynthesis protein ThiC


Domain annotation for each model (and alignments):
>> TIGR00190  thiC: thiamine biosynthesis protein ThiC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  676.3   0.0  7.8e-208  3.2e-204       2     422 ..     152     575 ..     151     576 .. 0.99

  Alignments for each domain:
  == domain 1    score: 676.3 bits;  conditional E-value: 7.8e-208
   TIGR00190   2 tqleearkGviteemeavaekenleaelvrdevakGrvvipsninreesepvaiGenlktkvnaniGtsadlsdieeeveklliavkygadtvmdlstGgdldeirkaileavevPvGtvPiyqalekvkGavvdldedvffrviekqakdGvdfltihagvllesverlkrsgritGivsrGGailakwilenekenplyknfdelleilkeydvtlslgdglrpGsiadasdeaqlaelitlgelverarekdvqvmveGPGhvPldqikanvkkqkelckeaPfyvlGPlvtdiapGydhitsaiGaaiaglaGadllcyvtPkehlalPnkedvkeGviatkiaahaadlakgkkgarerdlelskarkefdWekqfelaldpekareirdetlpeeee....acsmcG.eycalkivkear 422
                 tq++ arkG+iteem +vae+e +e+e+vr e+a+Gr++i sn n+ e ep +iG+ +k+k+naniG+sa +s+ieeevekl++++ +g dt+mdlstG++++e+r++i++++++PvGtvPiyqalekv+G+++dl+++vf++++++qa++Gvd++tihagvll++v+++    r tGivsrGG+i akw + ++ken+ y+++d++l+i+ eyd++ls+gdglrpGsi da+de+q+ael+t gel++ra+ekdvqvm eGPGhvPl++i +n+++q+e c+eaPfy+lGPl+tdiapGydhitsaiGaa +g+ G+++lcyvtPkehl+lPn++dvk G+ia+kiaahaadlakg +ga++rd++ls+ar+ef+W++qf+laldp +ar+++detl  + +    +csmcG ++c++ki++++r
  MMETSP1061-20121228|9229_1 152 TQMHFARKGMITEEMLFVAEREGVEPEFVRSEIARGRAIICSNKNHVELEPQIIGRMFKVKINANIGNSAITSSIEEEVEKLQWSTLWGGDTLMDLSTGKHIHETREWIMRNSPIPVGTVPIYQALEKVDGIAEDLTWEVFRETLIEQAEQGVDYFTIHAGVLLKYVPMTVG--RKTGIVSRGGSIHAKWNIFHHKENFAYEHWDDILDICSEYDIALSIGDGLRPGSIYDANDESQFAELKTQGELTKRAWEKDVQVMNEGPGHVPLHKIPENMRNQLEWCHEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTAMLCYVTPKEHLGLPNRDDVKAGIIAYKIAAHAADLAKGLPGAQDRDDALSNARFEFRWNDQFNLALDPVTARAFHDETLDSDASksshFCSMCGpKFCSMKITEDVR 575
                 9************************************************************************************************************************************************************************976..*******************************************************************************************************************************************************************************************************************************9887666777****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 2499.79
//
Query:       MMETSP1061-20121228|9231_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-07   26.1   0.0    4.6e-07   25.7   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    6.5e-05   19.4   0.0    7.9e-05   19.1   0.0    1.1  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    0.00025   17.8   0.0    0.00028   17.6   0.0    1.1  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
  ------ inclusion threshold ------
      0.026   10.6   0.0      0.033   10.3   0.0    1.1  1  TIGR00580 mfd: transcription-repair coupling factor
      0.041   10.4   0.0      0.057    9.9   0.0    1.1  1  TIGR00643 recG: ATP-dependent DNA helicase RecG


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   5.6e-10   4.6e-07     250     346 ..      70     176 ..      54     195 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 5.6e-10
   TIGR04121 250 ttlvFtNtRsqaEllfqaLleaneelaleialh....H.....gsldkeqRekveaalkagk...lravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHr 346
                  tlvF+ tR  aE+l  +L  + +e  + i       H     +sl + +R+  ++   +g+    r++v+T     G+D  +v++v+q   +k+    + RiGR++  
  MMETSP1061-20121228|9231_1  70 RTLVFVATRVSAETLAAQLRMVLPE--TAIETIhgdkHqadrtASLRAFARTGSDNDSDSGNdrfPRVLVATDVAGRGLDIPNVERVVQFDPAKNWDTHVHRIGRAGRL 176
                 59***********************..44444402222222224677777777777666666332478**************************************864 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0   9.6e-08   7.9e-05     275     323 ..     133     181 ..      67     206 .. 0.71

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 9.6e-08
   TIGR01389 275 vkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkae 323
                  +v+vat   G G+d ++v  v+ +d  kn +++    GRaGR   ++e
  MMETSP1061-20121228|9231_1 133 PRVLVATDVAGRGLDIPNVERVVQFDPAKNWDTHVHRIGRAGRLSSATE 181
                 379****************************************777666 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   3.4e-07   0.00028     278     322 ..     134     178 ..      70     210 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3.4e-07
   TIGR00614 278 qvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDgl 322
                 +v+vat   G G++ p+v  v+ ++ +k+ +++   +GRaGR   
  MMETSP1061-20121228|9231_1 134 RVLVATDVAGRGLDIPNVERVVQFDPAKNWDTHVHRIGRAGRLSS 178
                 699***999*********************************654 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0     4e-05     0.033     663     736 ..      74     158 ..      71     197 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 4e-05
   TIGR00580 663 yvhnriesieklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefd............vLvcTtiiEsGidipnaNTiiier 736
                 +v+ r++  e+l++qlr++ Pe  i  +Hg  ++ +    + +F++  +d            vLv+T +   G+dipn+  ++  +
  MMETSP1061-20121228|9231_1  74 FVATRVS-AETLAAQLRMVLPETAIETIHGDKHQADRTASLRAFARTGSDndsdsgndrfprVLVATDVAGRGLDIPNVERVVQFD 158
                 5666664.58999*******************9999999999*9875443334455555556****************99877544 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   6.9e-05     0.057     468     552 ..      80     175 ..      75     193 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 6.9e-05
   TIGR00643 468 aaealleelkkafpklnvallhgrlksdekeevleeFrekevd............iLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgR 552
                 +ae+l  +l+ ++p+ +++ +hg  +++++ + l++F     d            +LvaT v   G+d+Pn+  +v  d+ +   +  H + GR gR
  MMETSP1061-20121228|9231_1  80 SAETLAAQLRMVLPETAIETIHGDKHQADRTASLRAFARTGSDndsdsgndrfprVLVATDVAGRGLDIPNVERVVQFDPAKNWDTHVHRI-GRAGR 175
                 578899999999*************************754322223334444555*****************9999888777666666665.55555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 1435.38
//
Query:       MMETSP1061-20121228|9230_1  [L=1391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-85  286.0  11.3    1.6e-58  196.4   0.7    3.1  3  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    1.3e-31  107.7   5.8    7.4e-16   55.9   1.5    2.2  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    1.3e-23   81.6   2.5    3.9e-13   47.0   1.4    2.7  3  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    7.2e-22   75.9   3.9    5.5e-11   40.4   0.3    2.8  3  TIGR01387 cztR_silR_copR: heavy metal response regulator
    9.4e-22   75.3   8.2    9.7e-11   39.2   1.9    2.5  2  TIGR02875 spore_0_A: sporulation transcription factor Spo0A
    4.5e-19   66.5   6.0    4.7e-10   37.0   0.6    2.3  2  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    8.3e-19   65.5   5.5    1.8e-10   38.0   0.2    2.5  2  TIGR01818 ntrC: nitrogen regulation protein NR(I)
    7.2e-11   38.9   1.0    2.5e-08   30.5   0.7    2.1  2  TIGR03785 marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
    1.3e-07   28.4   4.4    7.5e-07   25.9   3.0    1.9  1  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    2.2e-06   24.6   3.3    0.00033   17.4   0.1    2.3  2  TIGR02915 PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
    4.4e-05   20.0   0.3    0.00012   18.6   0.0    1.7  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.4   0.7   4.4e-61   1.6e-58     418     693 ..     588     884 ..     564     895 .. 0.87
   2 !   44.2   0.1   4.2e-15   1.6e-12     701     818 ..    1098    1214 ..    1080    1247 .. 0.82
   3 !   51.3   0.3     3e-17   1.1e-14     700     825 ..    1256    1382 ..    1235    1390 .. 0.85

  Alignments for each domain:
  == domain 1    score: 196.4 bits;  conditional E-value: 4.4e-61
   TIGR02956 418 LkehkesLeelvaqrTqeLketnerLneEvlnHakAraeAeeAnrAKSaFLAtmSHEiRTPlnGvlGTleLLadt.kLtseqqkylqvinrSGesLldiLnDiLDySkiEaGhlsiserafdlskLledvlhlmes..raqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdrGs.vvlrvslndds......................llfeVeDtGvGiaeeeqetlFkaftqae..grkksgGTGLGLAiskrlveamdgelsveSelgkGScFafelplergkkaeksat 693
                 Lk   + +e  +++rT+eL+  n++L++   +        ++A++      A mSHEiRTPln ++G  +LL +t +L++e  ++++++ +S +  + + nD+LDy kiE Gh ++  +++dl++ l+ v+h ++   r q+k+++ +++  ++l +++++D +r++Qvl+N++gNa+KF  +G  + l+vs+   s                      + f+++D G Gi+ +  e++F++f+qa    +   gGTGLGL i+k++v+ ++g++s++Se gk  +F  +lp e g k+ +  +
  MMETSP1061-20121228|9230_1 588 LKTMTDRMESEIKERTTELADANRKLEAANAE------ISQHASKQ-LEHFACMSHEIRTPLNCIVGMSSLLLETdNLNEELLDMINMVYNSADLVQGVVNDVLDYAKIESGHFELDIQPIDLQATLNGVVHSISNklRTQDKNVEVRTHYCGHLGKTMTTDGRRLQQVLYNILGNAAKFSREGTtIDLKVSILAASggdndkpddpndpellsraphkIQFSIKDYGKGIDAKDFEKIFQPFSQASkeTQTIYGGTGLGLSITKKIVSRLGGTISIKSEVGKYTEFIVDLPYEDGLKEISRYQ 884
                 7888999*******************652221......22334443.3456*****************998766538*****************************************************99997544899*******************************************54899999977666788999******************************************974555679**************************************99977665554 PP

  == domain 2    score: 44.2 bits;  conditional E-value: 4.2e-15
   TIGR02956  701 parvLlvEDNevnamvaqglleklGhk.vtlaesgksAlecleekaFDlallDinLpDtdGvtLlkqLkeleeakeelkfiavsAhvfnedvekylaagFdgflaKPlsekqLvatlak 818 
                  ++++L+v+DN +n++v   +l++lG+  + ++++gk+A    e  +FD +l+D+++p + G++  +++   +  ke+ ++i v+ h +++  ek  aag   ++ KPl + ++ ++l +
  MMETSP1061-20121228|9230_1 1098 ALKMLIVDDNVINQKVLDRILKRLGVTdIHIVDNGKKAVDITETTSFDCILMDVEMPVMGGLEACRRIV--ARDKEAARVIFVTGHDIEDIKEKADAAGAFDYISKPLRMTEINSILTT 1214
                  4599*********************9725689*****************************98887654..444456899******9988778888999999*********99888764 PP

  == domain 3    score: 51.3 bits;  conditional E-value: 3e-17
   TIGR02956  700 pparvLlvEDNevnamvaqglleklGhk.vtlaesgksAlecleekaFDlallDinLpDtdGvtLlkqLkeleeakee.lkfiavsAhvfnedvekylaagFdgflaKPlsekqLvatlakilegkks 825 
                     +vL+ EDN +n++v   +l++ G+  +t++++gk+A    e  +FD +l+D+++p + G++  k + e  + k++  k+i v+Ah + e  ek +aag d f+ KP +++++ ++++++ e++k+
  MMETSP1061-20121228|9230_1 1256 REIKVLVAEDNVINQKVLDRILKRVGVTdITIVDNGKKAVDISETTKFDCILMDMQMPIMGGLEACKIIVERDKGKKDpPKVIFVTAHALVEFKEKAIAAGGDDFITKPFKMQDIDNVMKTV-EDAKR 1382
                  3459**********************8637899*********999**********************9999999999879*********************************998777654.45544 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.9   1.5     2e-18   7.4e-16      57     256 ..     572     772 ..     563     778 .. 0.76
   2 !   53.2   0.1   1.3e-17     5e-15     257     332 ..     795     870 ..     792     871 .. 0.95

  Alignments for each domain:
  == domain 1    score: 55.9 bits;  conditional E-value: 2e-18
   TIGR02966  57 spelkeylaekkaeeplelksplneervlevrivpygeeelllvarDvtklkrleqmRrdFvanvsHELrtPLtvlkGyletleeepeeddeaaekalelmeeqskrmqsLvedLltLsrlEsaakekeeekvdvaelleelkkeaeals..eekehqielev..daavkvkgdeeeLrsalsNLveNAikytpeggeitvrwe 256
                 +p l+ +++ ++++  l+++ + + e+ ++ r++++++ ++ l a    ++++  +   + +a +sHE+rtPL  + G   +l e+ ++ +e+   +++++ + +  +q +v+d+l  +++Es + e + +++d+++ l+ + ++++ +   ++k+++++++   +   +++ d ++L+++l N++ NA k+++eg++i+++++
  MMETSP1061-20121228|9230_1 572 HPALTTIMRLHTNDLVLKTM-TDRMESEIKERTTELADANRKLEAAN-AEISQHASKQLEHFACMSHEIRTPLNCIVGMSSLLLET-DNLNEELLDMINMVYNSADLVQGVVNDVLDYAKIESGHFELDIQPIDLQATLNGVVHSISNKLrtQDKNVEVRTHYcgHLGKTMTTDGRRLQQVLYNILGNAAKFSREGTTIDLKVS 772
                 55555555554444434333.44555556666666555554444443.34555555666788*********************988.6777888899********************************************99998776501455555666654445667899999***********************99865 PP

  == domain 2    score: 53.2 bits;  conditional E-value: 1.3e-17
   TIGR02966 257 eeeegaelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkGstFsvk 332
                 ++ +++++s+kD G+GI+a++ ++++  F   +k+     gGtGLGL+I k +++r  ++++i+Se+gk ++F v+
  MMETSP1061-20121228|9230_1 795 RAPHKIQFSIKDYGKGIDAKDFEKIFQPFSQASKETQTIYGGTGLGLSITKKIVSRLGGTISIKSEVGKYTEFIVD 870
                 667899*******************************************************************875 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   1.4     1e-15   3.9e-13     200     379 ..     579     771 ..     572     777 .. 0.78
   2 !   32.0   0.0   3.6e-11   1.3e-08     383     457 .]     797     872 ..     792     872 .. 0.91
   3 ?   -3.8   0.0       2.7     1e+03     132     171 ..    1246    1285 ..    1218    1288 .. 0.72

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 1e-15
   TIGR01386 200 arissesLdqrldesrlpaElrelaqsfNamldrLedafqrlsqFs.......adlAHelRtPltnLltqtqvaLsreRsgeeyrevlesnleEleRlsrmvedmLfLaradnaqlalereeldlaaelekvaelf.evl.aeergvslkve..ge..aevegdaqlfrRalsNLlsNAlrytpegstievrv 379
                  r++ ++L  +  ++r+  E++e   ++  +  +Le a   +sq         a + He+RtPl+ +++ + ++L  +  +ee+ ++++   +  + ++ +v+d+L  a+ ++++ +l+++ +dl+a l+ v++   + l  ++++v+++ +  g+   +++ d   ++ +l N+l NA++++ eg+ti+++v
  MMETSP1061-20121228|9230_1 579 MRLHTNDLVLKTMTDRMESEIKERTTELADANRKLEAANAEISQHAskqlehfACMSHEIRTPLNCIVGMSSLLLETDNLNEELLDMINMVYNSADLVQGVVNDVLDYAKIESGHFELDIQPIDLQATLNGVVHSIsNKLrTQDKNVEVRTHycGHlgKTMTTDGRRLQQVLYNILGNAAKFSREGTTIDLKV 771
                 556666666666666666666666666666666666555444443311111115699*************************************************************************888877455524666666665522554446889***************************987 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 3.6e-11
   TIGR01386 383 adevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaes.adgktrfklkfp 457
                   +++ s+++ gkgi ++  +++F  F  + +  +    gtGLGL+I++ iv+  gG+++++s   + t+f++++p
  MMETSP1061-20121228|9230_1 797 PHKIQFSIKDYGKGIDAKDFEKIFQPFSQASKETQTIYGGTGLGLSITKKIVSRLGGTISIKSeVGKYTEFIVDLP 872
                 5678899********************************************************6667799999886 PP

  == domain 3    score: -3.8 bits;  conditional E-value: 2.7
   TIGR01386  132 svaallegkkrrvtilvaldikaekelldalrktllliav 171 
                  +     +   r++++lva d   ++++ld+++k++ ++ +
  MMETSP1061-20121228|9230_1 1246 KKRCAKQYPAREIKVLVAEDNVINQKVLDRILKRVGVTDI 1285
                  444555555679999**************99999877765 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.4   1.6e+03      50      76 ..     869     895 ..     862     900 .. 0.82
   2 !   35.7   0.1   4.1e-12   1.5e-09       1     108 [.    1101    1210 ..    1101    1230 .. 0.87
   3 !   40.4   0.3   1.5e-13   5.5e-11       1     108 [.    1260    1372 ..    1260    1389 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 4.4
   TIGR01387  50 vmlpgldGwevlkalresaketpvlll 76 
                 v lp+ dG + ++  +e  ++t +++l
  MMETSP1061-20121228|9230_1 869 VDLPYEDGLKEISRYQEMMTDTSIVIL 895
                 669999**9999999999999988887 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 4.1e-12
   TIGR01387    1 ilvvedeqktaeylqqGlsesGyv.vdivsnGrdGlhlaekddydliildvmlpgldGwevlkalr.esaketpvllltardevadkvkGlelGaddylvkpfefaella 108 
                  +l+v+d+   ++ l++ l   G   + iv+nG+  + ++e +++d i++dv +p + G e  + +  + ++   v+++t +d  + k k    Ga dy+ kp+ ++e+ +
  MMETSP1061-20121228|9230_1 1101 MLIVDDNVINQKVLDRILKRLGVTdIHIVDNGKKAVDITETTSFDCILMDVEMPVMGGLEACRRIVaRDKEAARVIFVTGHDIEDIKEKADAAGAFDYISKPLRMTEINS 1210
                  599*****************9975499*********************************99987514555667999999998888999999**************9865 PP

  == domain 3    score: 40.4 bits;  conditional E-value: 1.5e-13
   TIGR01387    1 ilvvedeqktaeylqqGlsesGyv.vdivsnGrdGlhlaekddydliildvmlpgldGwevlkal..resaketp..vllltardevadkvkGlelGaddylvkpfefaella 108 
                  +lv ed+   ++ l++ l   G   + iv+nG+  + ++e +++d i++d+++p + G e  k +  r+++k++p  v+++ta+  v+ k k +  G dd++ kpf+++++  
  MMETSP1061-20121228|9230_1 1260 VLVAEDNVINQKVLDRILKRVGVTdITIVDNGKKAVDISETTKFDCILMDMQMPIMGGLEACKIIveRDKGKKDPpkVIFVTAHALVEFKEKAIAAGGDDFITKPFKMQDIDN 1372
                  7999*****************9754999******************************99888774455666665579****************************9988644 PP

>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.2   3.7e-13   1.4e-10       3     138 ..    1099    1231 ..    1097    1242 .. 0.85
   2 !   39.2   1.9   2.6e-13   9.7e-11       2     122 ..    1257    1378 ..    1256    1390 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 3.7e-13
   TIGR02875    3 irivivddnkefvellkeylaaqedlevvGvaknGvealelikekkpdvvvldiimpyldGlgvleklaeielkakpkvlllsavGqekitkravelGadyyvlkpfdleilaarirqlaektvkdikassstvls 138 
                  ++++ivddn    ++l+  l +   +  + +  nG++a+++ +  + d +++d+ mp + Gl    ++   +++   +v++++    e+i ++a + Ga  y+ kp+ +  + + +  l +  ++ i  s++t ++
  MMETSP1061-20121228|9230_1 1099 LKMLIVDDNVINQKVLDRILKR-LGVTDIHIVDNGKKAVDITETTSFDCILMDVEMPVMGGLEACRRIVARDKE-AARVIFVTGHDIEDIKEKADAAGAFDYISKPLRMTEINSILTTLED-LNNRIPSSEPTKMK 1231
                  6899*****9999999988765.5566778899**********************************9988777.89********************************999876665544.47777777766554 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 2.6e-13
   TIGR02875    2 kirivivddnkefvellkeylaaqedlevvGvaknGvealelikekkpdvvvldiimpyldGlgvleklaeiel..kakpkvlllsavGqekitkravelGadyyvlkpfdleilaarirqla 122 
                  +i++++++dn    ++l+  l +   +  + +  nG++a+++ +  k d +++d+ mp + Gl   + + e ++  k  pkv++++a    +  ++a++ G d ++ kpf ++ + + ++ + 
  MMETSP1061-20121228|9230_1 1257 EIKVLVAEDNVINQKVLDRILKR-VGVTDITIVDNGKKAVDISETTKFDCILMDMQMPIMGGLEACKIIVERDKgkKDPPKVIFVTAHALVEFKEKAIAAGGDDFITKPFKMQDIDNVMKTVE 1378
                  699*******9999999887765.567778899******************************99988877654114569******************************9998766555544 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.2   4.9e-11   1.8e-08       3     112 ..    1099    1208 ..    1097    1229 .. 0.87
   2 !   37.0   0.6   1.3e-12   4.7e-10       4     119 ..    1259    1377 ..    1256    1389 .. 0.84

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 4.9e-11
   TIGR02154    3 krilvvedeeairellaynlekegyevvea.edaeealalikeelPdlilldWmlpgtsGielarrlrkeeetreiPiimltargeeedrvrgletGaddyvvkPfspkel 112 
                   ++l+v+d+   +++l   l++ g + ++   ++++a+ + + +  d il+d  +p + G+e +rr+  +++  +  +i +t +  e+ + ++  +Ga dy+ kP  ++e+
  MMETSP1061-20121228|9230_1 1099 LKMLIVDDNVINQKVLDRILKRLGVTDIHIvDNGKKAVDITETTSFDCILMDVEMPVMGGLEACRRIVARDKE-AARVIFVTGHDIEDIKEKADAAGAFDYISKPLRMTEI 1208
                  579*******************998877761567778888888889*********************988765.5689***************************999886 PP

  == domain 2    score: 37.0 bits;  conditional E-value: 1.3e-12
   TIGR02154    4 rilvvedeeairellaynlekegyevve.aedaeealalikeelPdlilldWmlpgtsGielarrlrkeeetreiP..iimltargeeedrvrgletGaddyvvkPfspkellarikav 119 
                  ++lv ed+   +++l   l++ g + ++ + ++++a+ + + ++ d il+d  +p + G+e ++ + ++++ ++ P  +i +ta++  e + +++ +G dd+++kPf ++++   +k+v
  MMETSP1061-20121228|9230_1 1259 KVLVAEDNVINQKVLDRILKRVGVTDITiVDNGKKAVDISETTKFDCILMDMQMPIMGGLEACKIIVERDKGKKDPpkVIFVTAHALVEFKEKAIAAGGDDFITKPFKMQDIDNVMKTV 1377
                  79******************9998766615667788888888899*******************998888776665579*****************************99865555544 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.2   4.9e-13   1.8e-10       2     111 ..    1102    1213 ..    1101    1238 .. 0.86
   2 !   29.1   0.7   2.5e-10   9.2e-08       1     115 [.    1260    1382 ..    1260    1391 .] 0.79

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 4.9e-13
   TIGR01818    2 lvvdddrsirtvlekalaeagle.vrtfdnaasvlralareqpdllitdvrmPgedgldllkkikkr.rPklpvivmsahsdldaavkayqrGafeylpkPfdldeavalve 111 
                  l+vdd+   + vl++ l++ g++ ++ +dn+++++   ++   d ++ dv mP + gl+  ++i  r +   +vi ++ h   d   ka   Gaf+y++kP+ + e+ ++  
  MMETSP1061-20121228|9230_1 1102 LIVDDNVINQKVLDRILKRLGVTdIHIVDNGKKAVDITETTSFDCILMDVEMPVMGGLEACRRIVARdKEAARVIFVTGHDIEDIKEKADAAGAFDYISKPLRMTEINSILT 1213
                  7999999999**********98548999***********************************9776155679999999998888999999*************99888764 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 2.5e-10
   TIGR01818    1 vlvvdddrsirtvlekalaeagle.vrtfdnaasvlralareqpdllitdvrmPgedgldllkki....kkrrPklpvivmsahsdldaavkayqrGafeylpkPf...dldeavalverala 115 
                  vlv++d+   + vl++ l++ g++ ++ +dn+++++   ++ + d ++ d++mP + gl+  k i    k ++   +vi ++ah+ ++   ka+  G  ++++kPf   d+d+++  ve a  
  MMETSP1061-20121228|9230_1 1260 VLVAEDNVINQKVLDRILKRVGVTdITIVDNGKKAVDISETTKFDCILMDMQMPIMGGLEACKIIverdKGKKDPPKVIFVTAHALVEFKEKAIAAGGDDFITKPFkmqDIDNVMKTVEDAKR 1382
                  678888888899*********986378899***************************99866555221155556668*****************************33344444555555444 PP

>> TIGR03785  marine_sort_HK: proteobacterial dedicated sortase system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.7   6.7e-11   2.5e-08     462     624 ..     604     772 ..     590     777 .. 0.88
   2 !    6.3   0.0    0.0014      0.54     624     690 ..     794     860 ..     791     872 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 6.7e-11
   TIGR03785 462 DEiGdLsrsFaeivarLreY.teYLenlssrLsHElrTPv.AvVrsSLenLelqklekekqkYleRAqegverlsaiLnsmseAtRlEqalqsaekedfdlsevlselvqgYqqlyeeqrfeleieeedl.....vlrgspellaQllDKlvdNaieFskedglIevslk 624
                  E+ d +r+   + a +++  ++ Le ++  +sHE+rTP+  +V  S   Le+ +l++e  + ++   ++++ ++ ++n   + +++E    + +++++dl++ l+++v++  +  ++q+ ++e++++ +     +++  +  l Q+l  ++ Na+ Fs+e+++I+++++
  MMETSP1061-20121228|9230_1 604 TELADANRKLEAANAEISQHaSKQLEHFAC-MSHEIRTPLnCIVGMSSLLLETDNLNEELLDMINMVYNSADLVQGVVNDVLDYAKIESGHFELDIQPIDLQATLNGVVHSISNKLRTQDKNVEVRTHYCghlgkTMTTDGRRLQQVLYNILGNAAKFSREGTTIDLKVS 772
                 567777777777777776662467888875.8********4477767679*****************************************************************************99999999********************************987 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0014
   TIGR03785 624 kekkkealltveNeGpplPedlkeklFdsmvSvRaqkaqeqpHLGlGLyIvrliadfHqgeikaeNr 690
                 ++  +++  +++ +G+ + +++ ek+F+++    +++++     GlGL I++ i+   +g i+++ +
  MMETSP1061-20121228|9230_1 794 SRAPHKIQFSIKDYGKGIDAKDFEKIFQPFSQASKETQTIYGGTGLGLSITKKIVSRLGGTISIKSE 860
                 5566788999********************88887888888899************99999998865 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   3.0     2e-09   7.5e-07     606     679 .]     794     872 ..     599     872 .. 0.67

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 2e-09
   TIGR02916 606 erekeaavieieDsGqGms.eeFirerLFkPFd.ttKka.....GmGiGvyesreyveelGGeieveStpgkGtiftlvlP 679
                 +r  ++++ +i+D G+G++ ++F  e++F+PF+ ++K++     G G+G+  ++++v  lGG+i+++S++gk t f + lP
  MMETSP1061-20121228|9230_1 794 SRAPHKIQFSIKDYGKGIDaKDF--EKIFQPFSqASKETqtiygGTGLGLSITKKIVSRLGGTISIKSEVGKYTEFIVDLP 872
                 4555778899********83568..*******6245543345559********************************9998 PP

>> TIGR02915  PEP_resp_reg: PEP-CTERM-box response regulator transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.1   8.9e-07   0.00033       1     113 [.    1101    1212 ..    1101    1228 .. 0.86
   2 !    7.6   0.3   0.00083      0.31       2     112 ..    1261    1373 ..    1260    1390 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 8.9e-07
   TIGR02915    1 lliveddlglqkqlkwslad...yelvvaadresaialvrrhePavvtldlGlPPdadsaseGlaaleqilaia.PdtkvivitGnddrenalkaielGaydfyqkPldadvlkliv 113 
                  +liv+d+   qk l   l+     ++ +  + ++a+++        +++d+ +P     +  Gl+a ++i+a     ++vi +tG+d ++   ka  +Ga+d+ +kPl + +++ i+
  MMETSP1061-20121228|9230_1 1101 MLIVDDNVINQKVLDRILKRlgvTDIHIVDNGKKAVDITETTSFDCILMDVEMP-----VMGGLEACRRIVARDkEAARVIFVTGHDIEDIKEKADAAGAFDYISKPLRMTEINSIL 1212
                  699***999999998877651114677889999******************999.....6789*****99987615689*****************************999988775 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00083
   TIGR02915    2 liveddlglqkqlkwslady...elvvaadresaialvrrhePavvtldlGlPPdadsaseGlaaleqila....iaPdtkvivitGnddrenalkaielGaydfyqkPldadvlkli 112 
                  l+ ed+   qk l   l+ +   ++ +  + ++a+++    +   +++d+ +P        Gl+a + i++     +   kvi +t +   e   kai +G  df +kP++++ ++ +
  MMETSP1061-20121228|9230_1 1261 LVAEDNVINQKVLDRILKRVgvtDITIVDNGKKAVDISETTKFDCILMDMQMPIM-----GGLEACKIIVErdkgKKDPPKVIFVTAHALVEFKEKAIAAGGDDFITKPFKMQDIDNV 1373
                  6777777777777766655311156777888999999999999999999999854.....344444444331111344569*****************************88766544 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1      0.52     2e+02     261     320 ..     611     669 ..     585     695 .. 0.67
   2 !   18.6   0.0   3.2e-07   0.00012     422     490 ..     798     869 ..     792     873 .. 0.81

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.52
   TIGR02938 261 salkallaeeeklealr.etlsaaihrlqgPlnlisaaisvlerrgddagndavaallqqa 320
                 + l+a  ae  + ++ + e +    h ++ Pln i    s+l     d  n+ ++++++ +
  MMETSP1061-20121228|9230_1 611 RKLEAANAEISQHASKQlEHFACMSHEIRTPLNCIVGMSSLLLET--DNLNEELLDMINMV 669
                 456677777666666542566666788888888887777766554..44455556665544 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 3.2e-07
   TIGR02938 422 dlirveiedsGPGiPadlrlkvfePffttkass...rkhvGmGlavaqeivakhaGlidvdddyreGcrivv 490
                 + i+ +i+d G Gi a    k+f+Pf  +   +     + G+Gl+++++iv++ +G i++ ++  +    +v
  MMETSP1061-20121228|9230_1 798 HKIQFSIKDYGKGIDAKDFEKIFQPFSQASKETqtiYGGTGLGLSITKKIVSRLGGTISIKSEVGKYTEFIV 869
                 67999*********************87654441334578999****************9988766665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.74u 0.14s 00:00:00.88 Elapsed: 00:00:00.42
# Mc/sec: 4371.35
//
Query:       MMETSP1061-20121228|9233_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 1366.73
//
Query:       MMETSP1061-20121228|9232_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   11.5   0.0      0.031   10.9   0.0    1.2  1  TIGR02658 TTQ_MADH_Hv: methylamine dehydrogenase heavy chain


Domain annotation for each model (and alignments):
>> TIGR02658  TTQ_MADH_Hv: methylamine dehydrogenase heavy chain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.7e-06     0.031     311     350 ..     188     227 ..     147     234 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.7e-06
   TIGR02658 311 avsqdekpllyalstedktlyifdavtGkelssvdelGra 350
                  ++ d++ + ya+st+dk++ i d+ tG+e+  +++   +
  MMETSP1061-20121228|9232_1 188 DIAWDARGEHYAISTKDKCIRIIDPRTGEETLVIEKAHDG 227
                 3567999***********************9999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1988.35
//
Query:       MMETSP1061-20121228|9237_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 2087.08
//
Query:       MMETSP1061-20121228|9236_1  [L=945]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (945 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.40
# Mc/sec: 3118.24
//
Query:       MMETSP1061-20121228|9238_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 2867.76
//
Query:       MMETSP1061-20121228|9239_1  [L=1015]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1015 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 3940.26
//
Query:       MMETSP1061-20121228|9235_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-37  126.4   0.1    1.4e-37  126.2   0.1    1.0  1  TIGR00037 eIF_5A: translation initiation factor eIF-5A
    4.8e-08   30.7   0.0    5.2e-08   30.6   0.0    1.1  1  TIGR00038 efp: translation elongation factor P
    0.00087   17.3   0.0      0.001   17.1   0.0    1.1  1  TIGR02178 yeiP: elongation factor P-like protein YeiP
  ------ inclusion threshold ------
      0.026   12.1   0.0       0.05   11.2   0.0    1.5  1  TIGR00149 TIGR00149_YbjQ: secondary thiamine-phosphate synthase enzyme


Domain annotation for each model (and alignments):
>> TIGR00037  eIF_5A: translation initiation factor eIF-5A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.2   0.1   1.4e-40   1.4e-37       3     122 ..      17     146 ..      15     154 .. 0.87

  Alignments for each domain:
  == domain 1    score: 126.2 bits;  conditional E-value: 1.4e-40
   TIGR00037   3 akkqvevkaLrkggyvvidgepckivdisvskpGkhGaakarvvaigifdkkkrefvsPvtskvevPivdrkeaqvlaidggvvqlmdleteetlevkiP...eelkdsleegv.e......veyiealG 122
                  + ++e  +++kggy++i+g+pck+++isvsk+GkhG+ak    a++if++kk+e++ P+t+  evPiv+r    +++i+g+ + lmd  ++++ ++++P   +e+ ++++e+  e      v++  a+ 
  MMETSP1061-20121228|9235_1  17 LTIPMEAGQIKKGGYMMIKGKPCKVLSISVSKTGKHGHAKCNFTAVDIFTGKKLEDMIPSTHGTEVPIVNRADWEIIDIEGDELTLMDEGGNQKTDLNLPtypDEMAEQIREAWdEgnntvmVTVQGAVA 146
                 5789*********************************************************************************************986222699999999985577755444444444 PP

>> TIGR00038  efp: translation elongation factor P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   5.1e-11   5.2e-08       2      85 ..      22     106 ..      21     148 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 5.1e-11
   TIGR00038   2 sandlrkGlvieldgelyvvlefehvkpGk.gqafvrvklknlktgkvlektfksgekvekaeveekemqylYkdgdsyvfmdke 85 
                 +a +++kG  ++++g++++vl+++++k+Gk g+a  ++   ++ tgk+le  + s++  e   v++ + + +  +gd++++md+ 
  MMETSP1061-20121228|9235_1  22 EAGQIKKGGYMMIKGKPCKVLSISVSKTGKhGHAKCNFTAVDIFTGKKLEDMIPSTHGTEVPIVNRADWEIIDIEGDELTLMDEG 106
                 6789*************************74789*************************************************85 PP

>> TIGR02178  yeiP: elongation factor P-like protein YeiP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.8e-07     0.001       2      94 ..      23     114 ..      22     153 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 9.8e-07
   TIGR02178   2 aselkkGlvveyngktllikdievssPqgrGgaklyklrlsdvrtGakveerfkaddvldtvellrrevsfsyvdGeeyvfldeedytlytlk 94 
                 a ++kkG  +  +gk  ++  i vs  +g+ g  + ++   d+ tG k+e+   + +  +   ++r + +   ++G+e  ++de       l+
  MMETSP1061-20121228|9235_1  23 AGQIKKGGYMMIKGKPCKVLSISVSK-TGKHGHAKCNFTAVDIFTGKKLEDMIPSTHGTEVPIVNRADWEIIDIEGDELTLMDEGGNQKTDLN 114
                 779*******************9976.5666667789******************99999999999999**************9655444444 PP

>> TIGR00149  TIGR00149_YbjQ: secondary thiamine-phosphate synthase enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.9e-05      0.05      81     109 ..       3      31 ..       1      35 [. 0.89

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.9e-05
   TIGR00149  81 nadaHlkssllgtsqvvpvenGrlalGtW 109
                 + d H+ s+  g+s ++p+e G+++ G +
  MMETSP1061-20121228|9235_1   3 DDDYHIESTDAGASLTIPMEAGQIKKGGY 31 
                 7799********************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 986.78
//
Query:       MMETSP1061-20121228|9240_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1666.36
//
Query:       MMETSP1061-20121228|9241_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-29   99.7   1.9      1e-28   98.1   0.3    2.2  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.3e-28   98.1   0.4    4.8e-28   96.3   0.3    1.9  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    9.6e-26   88.7   0.4    1.5e-25   88.1   0.3    1.4  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
      1e-25   88.5   1.8    8.9e-25   85.4   0.9    2.3  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.4e-24   84.8   1.9    2.2e-24   84.2   1.3    1.3  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
      2e-19   67.7   2.6    9.6e-19   65.5   1.6    2.1  2  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    2.5e-19   67.5   1.8      5e-19   66.5   0.4    2.0  2  TIGR02415 23BDH: acetoin reductases
    3.2e-18   63.3   2.5    4.4e-18   62.8   1.7    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    4.2e-18   63.4   3.1    6.1e-18   62.9   2.2    1.2  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    1.5e-12   45.3   0.1    2.5e-12   44.6   0.0    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase
    1.4e-05   22.3   0.5    0.00083   16.5   0.1    2.1  2  TIGR01746 Thioester-redct: thioester reductase domain
    0.00031   18.0   0.5     0.0019   15.4   0.2    2.2  2  TIGR04058 AcACP_reductase: long-chain fatty acyl-ACP reductase (aldehyde-forming)
  ------ inclusion threshold ------
      0.023   11.4   0.0      0.041   10.6   0.0    1.4  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
      0.035   10.9   0.0      0.057   10.2   0.0    1.3  1  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.1   0.3   3.5e-31     1e-28       2     192 ..     118     325 ..     117     336 .. 0.85
   2 ?   -0.7   0.0       0.5   1.5e+02     163     198 ..     366     401 ..     365     412 .. 0.77

  Alignments for each domain:
  == domain 1    score: 98.1 bits;  conditional E-value: 3.5e-31
   TIGR01963   2 kvalvtGaasGiglaiakelaaaG..akvvvndleeeaaeaaakele.....eagge........vlalkadvtkeeeiadlieavaaefgs.ldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwG.riiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqi 192
                 k++l+tGa++G+g+++a ++a++    ++v+++ +++a+e++a+e++     ++gg+        v+ l+ad++++++++ l e ++++ g+ +d+Lvn  G+   +   +   e  e+++++n  s + + +a++p+m ++g G  i+ i+sv+gl++ + +++Y a+K ++ G+  +l  EvA++g+ ++++ Pgy+rt L +  +
  MMETSP1061-20121228|9241_1 118 KSILLTGASGGLGAQLALQIANHCkpKTLVLSGRKQDALEQIAAECKagwiqNSGGKsletadavVKILTADLSDKDSVRALGESAVSACGGvIDVLVNCGGVSSRSDFVDTRLEVDERVMQINFFSGASLAKAVVPTMIQSGNGgTILWISSVQGLMGIPSRTSYAASKFAVQGYCEALRAEVATSGVEVHCVSPGYIRTNLSRSAV 325
                 899******************97622689999999888888777654112112333211111111667899*********99998887776527***********************************************999879*******************************************************988765 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.5
   TIGR01963 163 vlAlEvAetgitanaicPgyvrtpLvekqiadqakt 198
                 v+A   A+  i   a++Pg  r  Lv++  + + k+
  MMETSP1061-20121228|9241_1 366 VAATASAKIAIWLRALAPGLLRKLLVQRFEKAKRKQ 401
                 5678889999999************99865544444 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.3   0.3   1.6e-30   4.8e-28       2     188 ..     121     323 ..     120     369 .. 0.82
   2 ?   -2.2   0.0         2   5.8e+02     166     196 ..     371     401 ..     364     411 .. 0.72

  Alignments for each domain:
  == domain 1    score: 96.3 bits;  conditional E-value: 1.6e-30
   TIGR01830   2 lvtGasrgiGkaiakklakega..kvviterskeekaeelaee.....lkeagvk........aaavkldvsdeeevkelveeveeelg.eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkr.sGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmtek 188
                 l+tGas g+G+++a+++a++    ++v++  +k++++e++a+e     ++++g+k        ++++++d+sd+++v++l e+++++ g  id+lvn  G++  + ++  + e  ++v+++n  +   ++kav+ +mi++   G i+ issv gl+G +  + YaasK  + g  ++l  E+a+ +++v +v+PG+i+t++ ++
  MMETSP1061-20121228|9241_1 121 LLTGASGGLGAQLALQIANHCKpkTLVLS-GRKQDALEQIAAEckagwIQNSGGKsletadavVKILTADLSDKDSVRALGESAVSACGgVIDVLVNCGGVSSRSDFVDTRLEVDERVMQINFFSGASLAKAVVPTMIQSGnGGTILWISSVQGLMGIPSRTSYAASKFAVQGYCEALRAEVATSGVEVHCVSPGYIRTNLSRS 323
                 89****************98753155555.556666777777622222344565422222221456789************99998876379*****************999999***********************986267999*****************************************************9865 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2
   TIGR01830 166 lasrnitvnavaPGfietdmteklsekvkkk 196
                  a+ +i + a+aPG+++  + +++++  +k+
  MMETSP1061-20121228|9241_1 371 SAKIAIWLRALAPGLLRKLLVQRFEKAKRKQ 401
                 5677788899999999998888876655544 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.3   5.2e-28   1.5e-25       4     232 ..     121     368 ..     118     391 .. 0.77

  Alignments for each domain:
  == domain 1    score: 88.1 bits;  conditional E-value: 5.2e-28
   TIGR01829   4 lvtGglgGiGtaickrlakd.........Gykvvanvapneerakewlqek.....evegfdvavvkadvssfeeakaavak.veaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfG.riinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvk.avredvlkkivaqiPvkrlgkpeeiaaava..flaseeagyvtGa 232
                 l+tG++gG+G++++ ++a++         G k  a  +  +e+++ w q++     e  +  v++++ad+s+ ++ +a  ++ v+a  G +dvlvn+ G+   + f     e  e v+++n+ s  ++++ v+ +m++ g G  i+ issv Gl G   ++ y+a+k  + G+  al +e+a++gv v  ++PGyi t++ + av  d  +    +  +   + p e+a  +    l++ ea +v  a
  MMETSP1061-20121228|9241_1 121 LLTGASGGLGAQLALQIANHckpktlvlsGRKQDALEQIAAECKAGWIQNSggkslETADAVVKILTADLSDKDSVRALGESaVSACGGVIDVLVNCGGVSSRSDFVDTRLEVDERVMQINFFSGASLAKAVVPTMIQSGNGgTILWISSVQGLMGIPSRTSYAASKFAVQGYCEALRAEVATSGVEVHCVSPGYIRTNLSRsAVTGDGSAYDQMDATTANGADPREVAVEILdrSLSGGEADFVVAA 368
                 89********99987776651110000003333333344567777888876221113456668999**********998776155666789**********9999*99999999************************998527999****************************************************9752666666655555556666677777776553225666666666655 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.9     3e-27   8.9e-25       3     191 ..     115     321 ..     113     331 .. 0.81
   2 ?   -3.7   0.0       4.9   1.4e+03     168     188 ..     368     388 ..     366     405 .. 0.71

  Alignments for each domain:
  == domain 1    score: 85.4 bits;  conditional E-value: 3e-27
   TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGa..divgvg.iselsetqek......vealGrk........flslkadladeeaakalvdeaveeag.kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnnt 191
                 leGk +l+tGa+ GlG  +a+ +a+      +v  g ++++ e +++      +++ G k        ++ l+adl+d+++++al ++av ++g  id+lvn  G+  r+d v+   +  + v+++n+ +   l++av   ++++G+ g i+ i+s+  + G    +sy+ask av G   +l +e a++g++v  ++PGy+ tn +
  MMETSP1061-20121228|9241_1 115 LEGKSILLTGASGGLGAQLALQIANHCKpkTLVLSGrKQDALEQIAAeckagwIQNSGGKsletadavVKILTADLSDKDSVRALGESAVSACGgVIDVLVNCGGVSSRSDFVDTRLEVDERVMQINFFSGASLAKAVVPTMIQSGNGGTILWISSVQGLMGIPSRTSYAASKFAVQGYCEALRAEVATSGVEVHCVSPGYIRTNLS 321
                 9***********************8754113333331333333222111112244445431222121156799****************99987589*****************99999999***********************************9999988999*************************************965 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.9
   TIGR01832 168 anewakkginvnaiaPGylet 188
                 a+  ak +i + a+aPG l  
  MMETSP1061-20121228|9241_1 368 ATASAKIAIWLRALAPGLLRK 388
                 556678888999999998765 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.2   1.3   7.3e-27   2.2e-24       1     207 [.     115     324 ..     115     370 .. 0.89

  Alignments for each domain:
  == domain 1    score: 84.2 bits;  conditional E-value: 7.3e-27
   TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredl..detaklvealGrkvlarkadvrkleelravveegveefG.rldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepe 207
                 leGk  l+tGa+ G G   a+++a++      +   ++ +   + +a  ++    +   k +e++   v + +ad+ + + +ra  e++v+  G  +dv+v+  Gv s +   + + e  + v+++n+       kavvP++i+ +nGG+i+ +ssv gl ++p  + yaa+k+ + g  ++l  e+a  g+ v  ++P  ++t++ ++ 
  MMETSP1061-20121228|9241_1 115 LEGKSILLTGASGGLGAQLALQIANHCKPKTLVLSGRKQDALEQIAAECKAGWiqNSGGKSLETADAVVKILTADLSDKDSVRALGESAVSACGgVIDVLVNCGGVSSRSDFVDTRLEVDERVMQINFFSGASLAKAVVPTMIQSGNGGTILWISSVQGLMGIPSRTSYAASKFAVQGYCEALRAEVATSGVEVHCVSPGYIRTNLSRSA 324
                 89***********************99877766666666666666666666641145678999999999999******************9986279*******************************999999**********************************************************************997744 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   1.6   3.3e-21   9.6e-19       1     187 [.     120     321 ..     120     349 .. 0.84
   2 ?   -0.5   0.0      0.46   1.4e+02     168     199 ..     372     403 ..     358     410 .. 0.77

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 3.3e-21
   TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdra......daeesvaairaqggn........arllkfdvadrvavrevleadiaehgayygv.vlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemv 187
                 +l+tgas g+g  +al++a      ++     +       +ae  +  i+  gg+        +++l  d++d+ +vr++ e+ +++ g    v v + g++  + f     e  + v++ n+ +   + + +v  mi+  +gg i+ ++sv g+mg   +  y+a+k  + g   al  e+a   + v c++pg i t++ 
  MMETSP1061-20121228|9241_1 120 ILLTGASGGLGAQLALQIANHCKPKTLVLSGRKQdaleqiAAECKAGWIQNSGGKsletadavVKILTADLSDKDSVRALGESAVSACGGVIDVlVNCGGVSSRSDFVDTRLEVDERVMQINFFSGASLAKAVVPTMIQSGNGGTILWISSVQGLMGIPSRTSYAASKFAVQGYCEALRAEVATSGVEVHCVSPGYIRTNLS 321
                 689****************99876555444333300111145555555777776423333333688999*****************9998887626778999999999988888899*********************************************************************************9975 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.46
   TIGR01831 168 akrkitvnciapglidtemvaevekdlkealk 199
                 ak  i +  +apgl+   +v+  ek+ +++ +
  MMETSP1061-20121228|9241_1 372 AKIAIWLRALAPGLLRKLLVQRFEKAKRKQQE 403
                 5556677899******9999999998776655 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.4   1.7e-21     5e-19       3     190 ..     120     323 ..     118     349 .. 0.82
   2 ?   -2.1   0.0       1.5   4.3e+02     164     200 ..     367     403 ..     364     414 .. 0.74

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 1.7e-21
   TIGR02415   3 alvtGaaqGiGkaiaerLakdGf..avav....adlneetaketa.........kelkekgtkavavkldvsdkseveeaveqaveklGe.ldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemree 190
                  l+tGa+ G+G ++a ++a+      +++    +d  e+ a+e +         k l+ ++   +++++d+sdk++v ++ e+av+  G+ +dvlvn  Gv+  + + +   e  e++ ++n ++     +a +  + + +++G i+  +s+ g  g p  + y+++kfav+g+  +   e+a++g+ v + +PG ++t++ ++
  MMETSP1061-20121228|9241_1 120 ILLTGASGGLGAQLALQIANHCKpkTLVLsgrkQDALEQIAAECKagwiqnsggKSLETADAVVKILTADLSDKDSVRALGESAVSACGGvIDVLVNCGGVSSRSDFVDTRLEVDERVMQINFFSGASLAKAVVPTMIQSGNGGTILWISSVQGLMGIPSRTSYAASKFAVQGYCEALRAEVATSGVEVHCVSPGYIRTNLSRS 323
                 688999999999999999987642134442222333355554443111111111445555555667899******************98747***********************************************************************************************************99875 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.5
   TIGR02415 164 aakeLakkgitvnayaPGivktemreeideklaelag 200
                 aa   ak  i + a aPG+ +  + ++ ++++ + ++
  MMETSP1061-20121228|9241_1 367 AATASAKIAIWLRALAPGLLRKLLVQRFEKAKRKQQE 403
                 7777788889999999999999999888877666554 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   1.7   1.5e-20   4.4e-18     411     597 ..     114     314 ..     103     331 .. 0.89

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 1.5e-20
   TIGR02632 411 elarrvalvtGgasGiGrevarrlvdeG..ahvvladldaeaaeavaaelvdkfGadkava...........lkldvtdeeavkaafaevalayGGv.divvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPd 597
                  l ++ +l+tG+++G+G ++a++++++     +vl   +++a+e++aae +  + ++ +             l++d+ d+++v+a  + ++ a GGv d++vn  G+++ +++ +t le  ++ ++i+      +a+  +  + + g gg +++i+s+ +++  ++ ++y+a+k a +     l +e a+ g+ v  v P 
  MMETSP1061-20121228|9241_1 114 ALEGKSILLTGASGGLGAQLALQIANHCkpKTLVLSGRKQDALEQIAAECKAGWIQNSGGKsletadavvkiLTADLSDKDSVRALGESAVSACGGViDVLVNCGGVSSRSDFVDTRLEVDERVMQINFFSGASLAKAVVPTMIQSGNGGTILWISSVQGLMGIPSRTSYAASKFAVQGYCEALRAEVATSGVEVHCVSPG 314
                 688999********************8622689**************99875544433322355668999999**********************966*****************************98877788999999**********************************************************96 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   2.2   2.1e-20   6.1e-18       2     206 ..     116     337 ..     115     345 .. 0.82

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 2.1e-20
   TIGR03206   2 kdkvaivtgggggiggaicrrfaeega.kvavld......lnaeaaekvaaairekggk....aea....vavditdrasvda.avaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverka.grivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpekliea 206
                 ++k +++tg +gg+g+ + +++a+    k  vl       l++ aae  a+ i+++ggk    a+a    +++d++d++sv a   +a+  + g +dvlvn  g     +f++t     er++ in+     + +av++ m++ ++ g i+ i+s  +  g    + yaa k  +  +  +l  e a  g+ v  v pg   t l    +++ + +   ++a
  MMETSP1061-20121228|9241_1 116 EGKSILLTGASGGLGAQLALQIANHCKpKTLVLSgrkqdaLEQIAAECKAGWIQNSGGKsletADAvvkiLTADLSDKDSVRAlGESAVSACGGVIDVLVNCGGVSSRSDFVDTRLEVDERVMQINFFSGASLAKAVVPTMIQSGNgGTILWISSVQGLMGIPSRTSYAASKFAVQGYCEALRAEVATSGVEVHCVSPGYIRTNLSRSAVTGDGSAYDQMDA 337
                 7899******************998642666764212222444566666777999***833334442222468********862567778888899********************************999***********998725899*****************************************************988766666555555555 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   8.6e-15   2.5e-12       3     202 ..     120     322 ..     118     337 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 8.6e-15
   TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeie...........aevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsk..nvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqs 202
                 +l+tGas G+G +la ++a+  + +  +lvL++R ++aL +  ae +            e+++ +v+  ++dl+ +      ++al es+       i ++ n G +   s     + D+     ++  + n +s  +l+  ++ ++    g   t+  +ss+  +  ++s + Y ask a + +  +L  e     v v   +pG + t++  
  MMETSP1061-20121228|9241_1 120 ILLTGASGGLGAQLALQIAN--HCKPKTLVLSGRKQDALEQIAAECKagwiqnsggksLETADAVVKILTADLSDKD----SVRALGESAVSACGGVIDVLVNCGGVSSRSD----FVDTRleVDERVMQINFFSGASLAKAVVPTMI-QSGNGGTILWISSVQGLMGIPSRTSYAASKFAVQGYCEALRAEVAtSGVEVHCVSPGYIRTNLSR 322
                 69*****************9..5566789***************998444433222222344444555555555444....4556666665555556667777777655544....55554204468899**************9998.448899**************************************9999*************9865 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.1   2.8e-06   0.00083       2      74 ..     120     194 ..     119     221 .. 0.76
   2 ?    4.4   0.0     0.014         4     162     203 ..     279     324 ..     230     371 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.8e-06
   TIGR01746   2 vlLTGAtGfLGaylleeLlrrsteakviClVRakseehaleRLrealr........syrleeeklaa.erievvaGdlsepr 74 
                 +lLTGA+G LGa+l+ ++ +     k  +lV +  +++ale +   ++         ++l   + +a   ++++++dls ++
  MMETSP1061-20121228|9241_1 120 ILLTGASGGLGAQLALQIANHC---KPKTLVLSGRKQDALEQIAAECKagwiqnsgGKSL---E-TAdAVVKILTADLSDKD 194
                 9****************99995...6689999999999**********666542222222...2.22356899999988765 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.014
   TIGR01746 162 latGYaqSKwv....aEllvreasdrglpvtivRpGrilgdsetGa 203
                  +t Ya+SK++     E l +e +  g++v  v pG+i  +    a
  MMETSP1061-20121228|9241_1 279 SRTSYAASKFAvqgyCEALRAEVATSGVEVHCVSPGYIRTNLSRSA 324
                 5789******7222256666777777************98855444 PP

>> TIGR04058  AcACP_reductase: long-chain fatty acyl-ACP reductase (aldehyde-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.2   6.5e-06    0.0019     156     222 ..     118     185 ..     103     210 .. 0.88
   2 ?   -0.5   0.0      0.44   1.3e+02      24      53 ..     299     328 ..     265     336 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.5e-06
   TIGR04058 156 atvavvGatGdiGsavcrwleaktdvkelllvarekerleelqeelgrGkilsl.eealpeadivvwv 222
                  ++ + Ga+G +G+ ++  ++++ + k l+l  r+++ le++ +e + G i +   ++l +ad vv +
  MMETSP1061-20121228|9241_1 118 KSILLTGASGGLGAQLALQIANHCKPKTLVLSGRKQDALEQIAAECKAGWIQNSgGKSLETADAVVKI 185
                 567889*********************************************875268999***99976 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.44
   TIGR04058  24 deyadqdldlwcsappqivdeievtsvtGk 53 
                  e+a +++++ c++p  i  +++ ++vtG 
  MMETSP1061-20121228|9241_1 299 AEVATSGVEVHCVSPGYIRTNLSRSAVTGD 328
                 478899999999999999999988888885 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00014     0.041       3      55 ..     120     171 ..     118     195 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00014
   TIGR03466   3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkde 55 
                  l+tGa+G +G++++ +++++ ++ ++lv ++ ++  le++ +E+ +G ++++
  MMETSP1061-20121228|9241_1 120 ILLTGASGGLGAQLALQIANH-CKPKTLVLSGRKQDALEQIAAECKAGWIQNS 171
                 799************998776.678***********************99765 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00019     0.057       2      40 ..     115     153 ..     114     170 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00019
   TIGR03589   2 lnnksilitGgtGsfGkkfikkllekykvkkiiiysrde 40 
                 l++ksil+tG++G +G +   ++ ++ k+k +++  r +
  MMETSP1061-20121228|9241_1 115 LEGKSILLTGASGGLGAQLALQIANHCKPKTLVLSGRKQ 153
                 678*****************************9988743 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 1667.86
//
Query:       MMETSP1061-20121228|9242_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1106.19
//
Query:       MMETSP1061-20121228|9301_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 442.16
//
Query:       MMETSP1061-20121228|9322_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 257.98
//
Query:       MMETSP1061-20121228|9333_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|9341_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 872.28
//
Query:       MMETSP1061-20121228|9369_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-39  134.0   0.0    1.9e-39  133.4   0.0    1.1  1  TIGR00717 rpsA: ribosomal protein S1
    4.2e-12   43.1   0.1    7.7e-12   42.3   0.0    1.4  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    7.9e-05   20.1   0.1     0.0042   14.5   0.0    2.4  2  TIGR00448 rpoE: DNA-directed RNA polymerase
  ------ inclusion threshold ------
      0.015   13.2   0.0      0.041   11.8   0.0    1.7  1  TIGR00637 ModE_repress: ModE molybdate transport repressor domain


Domain annotation for each model (and alignments):
>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.4   0.0   1.9e-42   1.9e-39      16     267 ..      56     305 ..      43     311 .. 0.88

  Alignments for each domain:
  == domain 1    score: 133.4 bits;  conditional E-value: 1.9e-42
   TIGR00717  16 tkegsvvkGtVveinkdtvlVdvGlKsEgripveefedaq.lelqvgdevev......vlervedregetvlsrekaqrkeakiklekaeeeksiveGkivrkvKgGfiVdleGveaFLpgSqvdvkkvkdleeligkelkfkilkldkkrenivvsrralleeerskkreelleklkegeevkGvVknitdfgafvdlggvdgllhitdlswkrvkhPseivevgdevkvkvikvDkekkrislslkqlkedPWeeie 267
                  ++ s+vkG+ +e  +  v+Vd+G K+ + +p +e    q +  +v+d v+        +   ed++g+ + s ++ q + a+++++k++ e++i+e ++v  ++gG i  +eG++aFLpgS+   k   ++e+lig+ l++k l ++++++++vvs r+ + e         +  l+ g+ v GvV+ + ++gaf+++gg+ gllhi+++s+ r++  +++++ g  vk ++i  Dk ++ri+ls k ++++P + ++
  MMETSP1061-20121228|9369_1  56 FERHSIVKGQCIEYGAKGVIVDIGAKASAFLPEAEAALIQpVGSTVDDLVNLnedydfQIISDEDENGQLLVSIRRIQYRSAWETILKMQAEDAILEAEVVSVNRGGAICLVEGLRAFLPGSHLAGKM--ATEDLIGQILPLKFLEVNQENNKLVVSNRKAVVE-------TQMADLSRGDLVDGVVQALKPYGAFIEVGGMSGLLHISQISYDRIEDLEQVLQPGMPVKCMIIDHDKVNGRIALSTKTIEPNPGDMLK 305
                 34489******************************9888775555555554311111167788999*************************************************************5..999***********************96655433.......3356899****************************************************************************87665 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.17   1.8e+02     578     678 ..     109     202 ..      88     214 .. 0.57
   2 !   42.3   0.0   7.5e-15   7.7e-12     602     688 ..     209     295 ..     197     296 .. 0.91

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.17
   TIGR03591 578 eetgakidiedd..GtvkiaaadkeaaekakklieeitaevevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvleidk 678
                 e+++ +i  ++d  G++ +++  + + ++a ++i ++ ae   +++ e++vv++   ga + l++g  +++  S+la +     ed   +g+ +  k le+++
  MMETSP1061-20121228|9369_1 109 EDYDFQIISDEDenGQL-LVSIRRIQYRSAWETILKMQAE---DAILEAEVVSVNRGGA-ICLVEGLRAFLPGSHLAGKMA--TEDL--IGQILPLKFLEVNQ 202
                 45555553332222544.3455566666777766666554...6788888888887776.457777777777777775532..3444..36666666666665 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 7.5e-15
   TIGR03591 602 aekakklieeitaevevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvleidk.kgrvklsrka 688
                 +++ k+++e+ +a+   g+  +g v+ ++++gaf+e+ +g  gl+hiS+++ +r+e++e+vl+ g  vk  +++ dk +gr+ ls+k+
  MMETSP1061-20121228|9369_1 209 VSNRKAVVETQMADLSRGDLVDGVVQALKPYGAFIEV-GGMSGLLHISQISYDRIEDLEQVLQPGMPVKCMIIDHDKvNGRIALSTKT 295
                 556678899999************************7.799***********************************989******996 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.014        14      77     103 ..      54      80 ..      40      89 .. 0.85
   2 !   14.5   0.0   4.1e-06    0.0042      82     119 ..     226     263 ..     210     303 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.014
   TIGR00448  77 fkPelqeiveGevieivefGafvslGp 103
                 +  e + iv+G+ ie  + G+ v +G 
  MMETSP1061-20121228|9369_1  54 YSFERHSIVKGQCIEYGAKGVIVDIGA 80 
                 6667899******************97 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 4.1e-06
   TIGR00448  82 qeiveGevieivefGafvslGplddllhvsqvlddyvv 119
                 +++v+G v  +  +Gaf+ +G + +llh+sq+ +d + 
  MMETSP1061-20121228|9369_1 226 GDLVDGVVQALKPYGAFIEVGGMSGLLHISQISYDRIE 263
                 689******************************99875 PP

>> TIGR00637  ModE_repress: ModE molybdate transport repressor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0     4e-05     0.041      28      55 ..     132     162 ..     114     165 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4e-05
   TIGR00637  28 lsYksawdaikal...nellekplveaakGG 55 
                 + Y+saw++i ++   + +le+++v  ++GG
  MMETSP1061-20121228|9369_1 132 IQYRSAWETILKMqaeDAILEAEVVSVNRGG 162
                 89********99944347************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1467.41
//
Query:       MMETSP1061-20121228|9383_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.20
# Mc/sec: 2250.41
//
Query:       MMETSP1061-20121228|9412_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.2e-145  480.3   0.5    1.4e-72  242.5   0.1    2.1  2  TIGR01034 metK: methionine adenosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01034  metK: methionine adenosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  242.5   0.1   3.4e-76   1.4e-72       1     193 [.      19     225 ..      19     231 .. 0.93
   2 !  236.0   0.0   3.3e-74   1.4e-70     190     364 ..     247     434 ..     240     450 .. 0.88

  Alignments for each domain:
  == domain 1    score: 242.5 bits;  conditional E-value: 3.4e-76
   TIGR01034   1 lftsesvseGhPdkiadqisdavLdailkqdkkskvacevlvktglvligGeittsayvdieevarkvikdiGyteae........lGfdaktiavleaieeqspdiaqgvekeke.eelgaGdqgimfGyatketeellPlpillahkllkklaelrkegklpfLrpdaksqvtleyednk.....pvkvdtvvlstqhdeeislk 193
                 lf sesv eGhPdk+adq+sdavLda+lk d+ skvace+++k+++v+++Geitt  ++d+e ++r+ +++iG+++ e        +G+  +t+ vl  i++qspdia gv+  k+  ++gaGdqgimfGya +ete+l+Pl+ ++a +l kkl+++rk+g+l +Lrpd+k+qvt+ey+++      p+k++tvv+stqh+e +  k
  MMETSP1061-20121228|9412_1  19 LFSSESVNEGHPDKLADQVSDAVLDACLKADPFSKVACETATKDNMVMVFGEITTAGKIDYEAIVREQVREIGFDSFEddlgsvnsKGLSCDTCEVLVRINKQSPDIAGGVHVGKSdLDVGAGDQGIMFGYASDETEQLMPLTHMMATQLGKKLTDVRKDGTLWWLRPDGKTQVTIEYKQHTdgsvtPIKIHTVVISTQHAEPLKAK 225
                 699***********************************************************************97532233333389************************877658**************************************************************9999999*************9987665 PP

  == domain 2    score: 236.0 bits;  conditional E-value: 3.3e-74
   TIGR01034 190 islkelreaiieeiikpvlp.ke..........lldektkilinPtGrfviGGPlgdtGltGrkiivdtyGglarhGGgafsGkdpskvdrsaaylaryiaknlvaaglaervevqlsyaigvaePvsisvetfgtekk..seeellkvvkevfdlrpakiiekLdLlkpiyrktaayGhfgreefpW 364
                  s+++++e i e++ik++l+  +          +  e  +++inP+G+f+iGGP+gd+GltGrkii+dtyGg+++hGGgafsGkdp+kvdrsaay+ r+iak++v+agl++r++vqlsyaigva+P+si vet+gtek+  ++++++++vk +fd rp ++ ++L L++p y+ taay hfgre f+ 
  MMETSP1061-20121228|9412_1 247 PSMADMNELIHEKVIKATLEsIKlkngesalsiYNRETCNLHINPSGKFIIGGPQGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYACRWIAKSVVKAGLCKRALVQLSYAIGVAKPLSIFVETYGTEKEglTAAQITELVKINFDCRPGALARDLALREPKYNATAAYCHFGREPFEK 434
                 57889999999999999987433112222233355677889***********************************************************************************************99744799***************************************97764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2416.42
//
Query:       MMETSP1061-20121228|9461_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00024   18.2   0.1    0.00028   18.0   0.1    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23
  ------ inclusion threshold ------
       0.04   11.6   0.0      0.042   11.6   0.0    1.2  1  TIGR03793 TOMM_pelo: NHLP leader peptide domain


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   1.4e-07   0.00028      16      69 ..       5      56 ..       2      59 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.4e-07
   TIGR00601 16 dlepdetvkelKekiesekgkdayevaqqkLiyaGkiLs.Ddktvkeykikekdf 69
                 ++p++ +k +K ++e +     ++ ++q+L + G++L  D++t+ke +ik +d 
  MMETSP1061-20121228|9461_1  5 TVSPSTIIKSVKSQVEYDTK---VKRKHQRLSFKGRLLDnDKSTLKENGIKHRDT 56
                589*************9999...99*************736679*******9886 PP

>> TIGR03793  TOMM_pelo: NHLP leader peptide domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.1e-05     0.042      11      38 ..      26      53 ..      11      60 .] 0.81

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.1e-05
   TIGR03793 11 akawedeeFkqaLltnPkeilereGvel 38
                ++  +  +Fk +Ll+n k++l++ G++ 
  MMETSP1061-20121228|9461_1 26 KRKHQRLSFKGRLLDNDKSTLKENGIKH 53
                45556679*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 359.97
//
Query:       MMETSP1061-20121228|9487_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.4  73.9     0.0038   14.3  51.2    1.0  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3  51.2   9.3e-07    0.0038     157     233 ..       2      63 ..       1      64 [] 0.45

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.3e-07
   TIGR02794 157 AakkaEeeakakaaaeakkkaEaeeakkkaeaeak.KakaeaeaKakae.eakaKaeaeAkaKAeaeAkaKaeaeakak 233
                 A+kkaEeea+akaa                 aea+ Ka+aeaeaK+kae ea+aKaeaeAka AeaeAk+Kae ea+ak
  MMETSP1061-20121228|9487_1   2 AKKKAEEEAAAKAA-----------------AEAEaKAAAEAEAKKKAEeEAAAKAEAEAKAAAEAEAKKKAEEEAAAK 63 
                 45555555555555.................444445555555555555555555555554445555555554444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       582  (0.141882); expected 82.0 (0.02)
Passed bias filter:                      280  (0.0682594); expected 82.0 (0.02)
Passed Vit filter:                        62  (0.0151146); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 324.90
//
Query:       MMETSP1061-20121228|9491_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 514.06
//
Query:       MMETSP1061-20121228|9522_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 435.56
//
Query:       MMETSP1061-20121228|9531_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1061-20121228|9551_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 416.81
//
Query:       MMETSP1061-20121228|9559_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.48
# Mc/sec: 164.99
//
Query:       MMETSP1061-20121228|9589_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.30
# Mc/sec: 228.78
//
Query:       MMETSP1061-20121228|9617_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|9626_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 876.41
//
Query:       MMETSP1061-20121228|9693_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|9696_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 534.56
//
Query:       MMETSP1061-20121228|9705_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 224.38
//
Query:       MMETSP1061-20121228|9707_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 431.96
//
Query:       MMETSP1061-20121228|9777_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       252  (0.0614334); expected 82.0 (0.02)
Passed bias filter:                      191  (0.0465627); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1061-20121228|9772_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 815.93
//
Query:       MMETSP1061-20121228|9792_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1759.85
//
Query:       MMETSP1061-20121228|9797_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.0   0.2      0.026   11.6   0.1    1.2  1  TIGR01620 hyp_HI0043: TIGR01620 family protein


Domain annotation for each model (and alignments):
>> TIGR01620  hyp_HI0043: TIGR01620 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.1   6.3e-06     0.026     205     248 ..       6      48 ..       2      52 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.3e-06
   TIGR01620 205 rLlrlvlvniafaGaievadevgmdvlsqdlaakLstrlaqGig 248
                 rL +    ++a   a  +a+++++  l++ la +L+ rlaq + 
  MMETSP1061-20121228|9797_1   6 RLAQHLAHHLAHRLAHRLAQHLAQ-HLAHHLAHRLAHRLAQHLA 48 
                 566667778888888889999885.68999*********99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|9795_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    7.1  11.5        2.6    6.5   0.6    3.0  3  TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family


Domain annotation for each model (and alignments):
>> TIGR01726  HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.1     0.068   2.8e+02       7      30 ..      35      58 ..      31      72 .. 0.66
   2 ?    5.9   1.1   0.00095       3.9       2      35 ..      79     112 ..      78     121 .. 0.84
   3 ?    6.5   0.6   0.00063       2.6      10      85 ..     120     195 ..     112     202 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 0.068
   TIGR01726  7 kGlllTllisvlalllglvlglll 30
                +++l T  ++++++l  + +++ +
  MMETSP1061-20121228|9795_1 35 RAALSTGILTIISILCTIYTTIAV 58
                566677777777777766655544 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00095
   TIGR01726   2 lpallkGlllTllisvlalllglvlglllallrl 35 
                 lp++  G+++ l++s++ +++g+ lgl+l  + +
  MMETSP1061-20121228|9795_1  79 LPMFKIGIFFDLVVSIVDVVIGVTLGLILVGAGV 112
                 688999*********************9976665 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.00063
   TIGR01726  10 llTllisvlalllglvlglllallrlsknrllrrlatvyveliRgtPllvqlfliyfgLpligirlsaltaavlal 85 
                 ++T++i   a+  + ++ l+++ l l +++++  +++ y +     P+  q+ ++++ + ++g+ ++++  +v  +
  MMETSP1061-20121228|9795_1 120 ICTFKIVQQAISAANIIFLVATSLLLDSSSPIYDIVQKYFYSDNMPPIGTQISYMFLLMNQYGHYMQQIFGGVYMF 195
                 679999999*********************************9999********************9998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 1110.26
//
Query:       MMETSP1061-20121228|9820_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|9866_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1564.07
//
Query:       MMETSP1061-20121228|9897_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 473.96
//
Query:       MMETSP1061-20121228|9910_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-19   68.3   0.0    1.5e-19   68.2   0.0    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    1.2e-12   45.6   0.0    1.3e-12   45.5   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   7.3e-23   1.5e-19     242     318 ..       2      77 ..       1      78 [] 0.97

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 7.3e-23
   TIGR01534 242 dvSlvdlvlnlekevtkeevnaalkeaseg.lkgvlgysedelVSsDiigspkssivdakatkvtelkeklvkvvaWY 318
                 +vS+vdl+ +l+k +++e +  a+++a++g ++g+lgy+++++VSsD+i++p+ssivdaka ++  l++++vk+v+WY
  MMETSP1061-20121228|9910_1   2 NVSVVDLTARLDKGASYETIMGAIQDAANGpMNGILGYTDEDIVSSDFISDPRSSIVDAKAGIA--LSDDFVKLVSWY 77 
                 8***************************************************************..5567******** PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   6.1e-16   1.3e-12     237     313 ..       1      77 [.       1      78 [] 0.97

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 6.1e-16
   TIGR01532 237 vnvtaldlsvtvkkdvkanevnrvlreaaesalrgivdytelplvsvdfnhdphsaivdgtqtrvsgarlvkllvwc 313
                 +nv+ +dl+ +++k  + + +   +++aa+++++gi+ yt+   vs df  dp s+ivd       +  +vkl+ w+
  MMETSP1061-20121228|9910_1   1 INVSVVDLTARLDKGASYETIMGAIQDAANGPMNGILGYTDEDIVSSDFISDPRSSIVDAKAGIALSDDFVKLVSWY 77 
                 8***********************************************************999999999*****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 467.96
//
Query:       MMETSP1061-20121228|9945_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 681.94
//
Query:       MMETSP1061-20121228|10001_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 822.39
//
Query:       MMETSP1061-20121228|10003_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1724.37
//
Query:       MMETSP1061-20121228|10004_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1402.38
//
Query:       MMETSP1061-20121228|10005_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-41  138.8   0.0    2.5e-41  138.6   0.0    1.0  1  TIGR01101 V_ATP_synt_F: V-type ATPase, F subunit


Domain annotation for each model (and alignments):
>> TIGR01101  V_ATP_synt_F: V-type ATPase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6   0.0   6.1e-45   2.5e-41       7     113 ..       4     109 ..       1     114 [. 0.95

  Alignments for each domain:
  == domain 1    score: 138.6 bits;  conditional E-value: 6.1e-45
    TIGR01101   7 gkliavigdedtvvGfllgGiGeinknrepnflvvdkdttveeiedafkrflkrddidiilinqniaelirhavdahtasipavleipskdhpydaskdsilrrarg 113
                  gkl+avigdedtv+Gfll+G+G+ + +   nfl+v++dt++ ++e+afk +  r+d++iilinq+ia  irh++  ++++ip+vleipsk+hpyd+++d i++r++ 
  MMETSP1061-20121228|10005_1   4 GKLVAVIGDEDTVTGFLLAGVGHRT-AEGSNFLIVKQDTPLTQVEEAFKSLSSREDVGIILINQHIASEIRHVLKDYNQTIPTVLEIPSKEHPYDPEQDYIMQRVNM 109
                  89********************966.6789**************************************************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 542.10
//
Query:       MMETSP1061-20121228|10006_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1471.68
//
Query:       MMETSP1061-20121228|10007_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 490.25
//
Query:       MMETSP1061-20121228|10009_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 929.92
//
Query:       MMETSP1061-20121228|10008_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.07s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 1891.84
//
Query:       MMETSP1061-20121228|10016_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-42  143.0   0.0    1.6e-42  142.6   0.0    1.1  1  TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
    6.2e-10   37.1   0.0    7.6e-10   36.8   0.0    1.2  1  TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA


Domain annotation for each model (and alignments):
>> TIGR01750  fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  142.6   0.0   7.7e-46   1.6e-42       4     135 ..      79     210 ..      76     217 .. 0.89

  Alignments for each domain:
  == domain 1    score: 142.6 bits;  conditional E-value: 7.7e-46
    TIGR01750   4 keikellPhRyPlllvDrileleeekkivalknvtinepffqGhfPekPimPGvlivealaqaaGvlailslekekekgklvlfagidkakfrkpvvPGdqLklevellkk..krkiakvkaeakvdgkvvaea 135
                  +++ ++lPhRyP+ l+D+++e+ ++kk+v++k+v+ ne+ff+GhfP++P+mPGv+ +ealaq +Gv++ +  +   e+g++ +f + d +k++kpvvPGd L++eve++k+  +  i+k++++   dg++++e 
  MMETSP1061-20121228|10016_1  79 TDVDSILPHRYPFALIDKVVEIVPNKKAVGVKAVSKNEDFFNGHFPGQPVMPGVMQLEALAQLTGVILNTADG--IEDGTVGFFGSADGVKWKKPVVPGDLLVMEVEIKKMnlRFGIIKASGKGYTDGDLAVEV 210
                  68999************************************************************99977777..67779**************************9997611556788888999999999874 PP

>> TIGR01749  fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   3.7e-13   7.6e-10      58     160 ..     112     215 ..      70     222 .] 0.72

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 3.7e-13
    TIGR01749  58 irpdlwffechfigdpvmpgclgldamwqlvgfflgwlgep..gr.gralgvgevkftgqvlptakkvtykidlkrvinrklvlaladgelkvdgrliyeakdlrv 160
                  +  +  ff+ hf g+pvmpg + l+a+ ql+g  l    +   g  g   ++  vk++  v+p   +++ ++++k++ n ++ + +a g+  +dg l  e  ++ +
  MMETSP1061-20121228|10016_1 112 VSKNEDFFNGHFPGQPVMPGVMQLEALAQLTGVILNTADGIedGTvGFFGSADGVKWKKPVVPGD-LLVMEVEIKKM-NLRFGIIKASGKGYTDGDLAVEVGEMTL 215
                  4456679****************************8876540143133445567*********75.67789***986.5555555677777888877766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1331.89
//
Query:       MMETSP1061-20121228|10017_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-28   97.8   0.0    1.4e-28   97.6   0.0    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    1.3e-10   39.0   0.0    1.6e-10   38.7   0.0    1.0  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    1.1e-06   26.4   0.0    1.5e-06   25.9   0.0    1.2  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
  ------ inclusion threshold ------
      0.017   12.8   0.0      0.026   12.2   0.0    1.2  1  TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   1.4e-31   1.4e-28       1     184 [.      13     207 ..      13     208 .. 0.91

  Alignments for each domain:
  == domain 1    score: 97.6 bits;  conditional E-value: 1.4e-31
    TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllka.......eaklyelrrkkkisvkalatllsnllkss..kflpflvqllvgGvde..egpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdg 184
                  gt ++Gi+ + gv+lAad+ +s+g++ +s ++ ++++i+d+i l  +G ++d+q++v  +ka         ++ +++ ++kis+k+l + l  +++++  ++ p+   ++v+G d+  ++p l ++D lG +++++ +atG G+ +a+ +L d++++dls  ea  l    +k    RD  +   i++++ t+dg
  MMETSP1061-20121228|10017_1  13 GTSVIGIVYDGGVMLAADTLLSYGSMAKSFDTPRIYSIEDRILLGASGEYSDLQEIVTRVKAlaleestTNSIESIYVDRKISAKSLWNYLRAVMYQKrsRMNPYWNDVVVAGWDDqtSKPFLGTVDRLGTTLQENLVATGFGAYLAMPLLRDKWKPDLSEGEARALMEDCMKVLFYRDCRASSRIQLAKCTSDG 207
                  799*****************************************************9887762222111235678899****************998745799************944457789********************************************************************998 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.0   1.5e-13   1.6e-10      26     196 ..      10     188 ..       4     212 .. 0.82

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 1.5e-13
    TIGR03633  26 vkrgttavGiktkegvvlivdkrit.sklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYd.epieve..vlakkvadlkq..qytqvGGvrPfGvalliaGvddkearlf..etdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakal 196
                  +  gt+ +Gi ++ gv+l++d      ++ ++ +  +i+ i+d++   ++G  +D + ++ r +  a+ +  t   e i v+    ak++ ++ +  +y +   + P+   +++aG dd++ + f  + d  G++l+ + va G g   ++ ll +++k dls  ea  l  + ++   
  MMETSP1061-20121228|10017_1  10 ITTGTSVIGIVYDGGVMLAADTLLSyGSMAKSFDTPRIYSIEDRILLGASGEYSDLQEIVTRVKALALEESTTNSiESIYVDrkISAKSLWNYLRavMYQKRSRMNPYWNDVVVAGWDDQTSKPFlgTVDRLGTTLQENLVATGFGAYLAMPLLRDKWKPDLSEGEARALMEDCMKVLF 188
                  567999***************987625777788999***************************9999988776543667665215678888876533799999****************9877663378*************************************9988776666554 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.5e-09   1.5e-06       3     165 ..      11     178 ..       9     188 .. 0.82

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.5e-09
    TIGR03690   3 phgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavel...vklfqvelehyekieGvplslegkanrlaamvrsnlaa...alqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavr 165
                  + gt+++ ++y gGv+la d   + G +  s d  +++  ++   +g +G  +   e+   vk  ++e    + ie   +  +  a+ l + +r  + +    ++      +++G+d +++k  + + d  g++ +e +  ++G G+  a   l+  +k+dlse +a  
  MMETSP1061-20121228|10017_1  11 TTGTSVIGIVYDGGVMLAADTLLSYGSMAKSFDTPRIYSIEDRILLGASGEYSDLQEIvtrVKALALEESTTNSIESIYVDRKISAKSLWNYLRAVMYQkrsRMNPYWNDVVVAGWDDQTSKPFLGTVDRLGTTLQE-NLVATGFGAYLAMPLLRDKWKPDLSEGEARA 178
                  579***********************************************876555541114555566666788999888777777777777777665411157777777899*****************9987755.6789*********************999865 PP

>> TIGR02158  PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   2.5e-05     0.026      75     129 ..     167     222 ..     139     225 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 2.5e-05
    TIGR02158  75 kngdfaqtivRqflydaykvlllealtessdaeLAaia.akalkEakyHlqhaktW 129
                   + d ++  +R ++ d  kvl++    +ss  +LA+ +    +  ++y l+h++ W
  MMETSP1061-20121228|10017_1 167 WKPDLSEGEARALMEDCMKVLFYRDCRASSRIQLAKCTsDGCIISEPYDLDHSNGW 222
                  556777788999************************86157899************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1348.58
//
Query:       MMETSP1061-20121228|10019_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|10015_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-20   68.6   0.0    1.2e-19   68.2   0.0    1.2  1  TIGR01068 thioredoxin: thioredoxin
    1.6e-11   42.2   0.0    2.1e-11   41.9   0.0    1.1  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    2.9e-08   31.5   0.0    3.4e-08   31.3   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    0.00016   20.0   0.1    0.00034   18.9   0.1    1.6  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
  ------ inclusion threshold ------
      0.024   12.1   0.0      0.028   11.8   0.0    1.2  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   1.5e-22   1.2e-19       5     100 ..      50     147 ..      47     148 .] 0.83

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 1.5e-22
    TIGR01068   5 nfeetvass.dklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeia...akygirsiPtlllfkngkevkrvvGakpkaalkeliekl 100
                   f++t+++s   lv+vD+  +WCgpCk++aP +ee+++++  ++ ++K+  d++++ +   ++ g+rs+P    fk+g++v+ v Ga+  +a++  i+k+
  MMETSP1061-20121228|10015_1  50 AFDKTISNSgGSLVVVDYSTTWCGPCKVIAPKFEEFSDKYP-DAVFLKVVGDASPDASklmKREGVRSVPSFHYFKDGEKVDVVNGANA-EAIEASITKH 147
                  5777776541679************************9998.5889***9999887662226789*********************998.6777777765 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   2.6e-14   2.1e-11       4     102 ..      49     145 ..      47     148 .] 0.74

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 2.6e-14
    TIGR01126   4 enfdelvlden.kdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdat.aekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefve 102
                  + fd++++++  + v+v++   WCG Ck +aP++e+ ++++ ++   +k+   da    ++l+++ +v++ P  ++fk+g+k  vd   + +ae++++ ++
  MMETSP1061-20121228|10015_1  49 AAFDKTISNSGgSLVVVDYSTTWCGPCKVIAPKFEEFSDKYPDAVF-LKVVG-DASpDASKLMKREGVRSVPSFHYFKDGEK--VDVVNGANAEAIEASIT 145
                  679999987651568899999********************97643.33333.44314478899****************97..44444445666666655 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.3   0.0   4.1e-11   3.4e-08       8      93 ..      48     134 ..      14     147 .. 0.52

  Alignments for each domain:
  == domain 1    score: 31.3 bits;  conditional E-value: 4.1e-11
    TIGR01130   8 kenfddliken..elvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakv..Datee.kelaqkygvsGyPtLkifrngesssdYnG 93 
                  + +fd++i+++   lv+v +   WCG Ck +aP++e+  ++     p+ +  kv  Da  + ++l ++ gv+  P+  +f++ge++   nG
  MMETSP1061-20121228|10015_1  48 EAAFDKTISNSggSLVVVDYSTTWCGPCKVIAPKFEEFSDKY----PDAVFLKVvgDASPDaSKLMKREGVRSVPSFHYFKDGEKVDVVNG 134
                  344555555542245555566666666666666665443333....333333332344333355666666666666666666655444444 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.1   4.2e-07   0.00034       4      55 ..      66     121 ..      63     145 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 4.2e-07
    TIGR02196   4 vYttpwCppCkkakeyLkskgiafee...id.vekdsaaaeellkklgqrsvPviv 55 
                   Y+t+wC+pCk +  ++++   ++ +   +  v + s +a +l+k+ g rsvP   
  MMETSP1061-20121228|10015_1  66 DYSTTWCGPCKVIAPKFEEFSDKYPDavfLKvVGDASPDASKLMKREGVRSVPSFH 121
                  5**********************98733334255667799*************876 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   3.4e-05     0.028      61      92 ..      58      89 ..       4     121 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.4e-05
    TIGR00385 61 kkgklvLlnvwasWCptCraehplLkelakeg 92
                   g lv+++  ++WC++C+   p  +e++ + 
  MMETSP1061-20121228|10015_1 58 SGGSLVVVDYSTTWCGPCKVIAPKFEEFSDKY 89
                 34678889999********9999999999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 930.21
//
Query:       MMETSP1061-20121228|10018_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1909.13
//
Query:       MMETSP1061-20121228|10050_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    4.3  13.8        3.1    4.1   9.6    1.0  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   9.6   0.00076       3.1     223     288 ..       4      69 ..       1      75 [. 0.77

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.00076
    TIGR01651 223 deqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaetpgeakrpdrpft 288
                  ++++ + e ee+   + + ee e+ + +ee  e  ++ea+++d ++e +e++ + g+ k  +  ++
  MMETSP1061-20121228|10050_1   4 NDEDAQEEAEESPVVEGNIEEVETIDAQEEAVESPVVEANNEDAQEEAEESPVVKGNIKEVEAIDA 69 
                  333344444555555677899999********************************9998776555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 423.47
//
Query:       MMETSP1061-20121228|10053_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   12.6   0.4      0.057   11.6   0.1    1.6  2  TIGR03642 cas_csx14: CRISPR-associated protein, Csx14 family


Domain annotation for each model (and alignments):
>> TIGR03642  cas_csx14: CRISPR-associated protein, Csx14 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.49     2e+03       3      33 ..     108     138 ..     107     142 .. 0.63
   2 ?   11.6   0.1   1.4e-05     0.057       6      58 ..     177     229 ..     173     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.49
    TIGR03642   3 sPaVitealdeLkkkgeeisdviliytkdek 33 
                  sPa     l+ L+    + ++ ++ +t+ ++
  MMETSP1061-20121228|10053_1 108 SPAFLKRKLEVLESDIANTEEELVAATERKE 138
                  5666666677777666666666666666655 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1.4e-05
    TIGR03642   6 VitealdeLkkkgeeisdviliytkdekVls.alevlkkelkkkfekaevhkik 58 
                  V+   ld+L+ + +  s+vi+  t+ e+V++ a + + +++ ++fek+ v++++
  MMETSP1061-20121228|10053_1 177 VVKGILDLLD-NFDRASGVIVAETEAEQVIEtAYKQAYQDILDQFEKMGVTEVE 229
                  6666778888.78999*************972668999************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1606.82
//
Query:       MMETSP1061-20121228|10087_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2117.33
//
Query:       MMETSP1061-20121228|10098_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 806.08
//
Query:       MMETSP1061-20121228|10105_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    6.1   7.7          2    5.9   5.3    1.2  1  TIGR00267 TIGR00267: TIGR00267 family protein
        8.4    4.1  19.0        8.6    4.0  13.2    1.1  1  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR00267  TIGR00267: TIGR00267 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   5.3   0.00096         2     100     129 ..      13      42 ..       4      47 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00096
    TIGR00267 100 ilGsvvPvlPflvfdvktalivavsltlia 129
                  ++  vvPv+P + + v +a+ vav++ ++a
  MMETSP1061-20121228|10105_1  13 VVVVVVPVVPVVAAAVVAAVAVAVAVPVAA 42 
                  456799**************9999987765 PP

>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  13.2    0.0042       8.6     108     143 ..       9      44 ..       1      53 [. 0.45

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0042
    TIGR04032 108 tgeanlvavvavaavlavvvvaaVAvatvalaavav 143
                    ++ +v+vv v+ v+a++vvaaVAva+ + +a+a+
  MMETSP1061-20121228|10105_1   9 VVVVVVVVVVPVVPVVAAAVVAAVAVAVAVPVAAAA 44 
                  233333444444444444444444444444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       497  (0.12116); expected 82.0 (0.02)
Passed bias filter:                      243  (0.0592394); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 274.13
//
Query:       MMETSP1061-20121228|10112_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-46  157.0   0.0    1.7e-46  156.6   0.0    1.2  1  TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS
  ------ inclusion threshold ------
      0.035   11.0   0.0      0.057   10.3   0.0    1.2  1  TIGR02029 AcsF: magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase


Domain annotation for each model (and alignments):
>> TIGR00975  3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.6   0.0   8.2e-50   1.7e-46       2     313 ..      28     357 ..      27     359 .. 0.87

  Alignments for each domain:
  == domain 1    score: 156.6 bits;  conditional E-value: 8.2e-50
    TIGR00975   2 tgaGstfpapliskwvedyeksnpakvtvnyqskGSgaGikqiaak.tvd...fgasDaplseaalkkeg.eqllqlplvigavvvayNlpgvskeeLkLdgdvlakiflGkikkWndpaiaalNPevklPe.tkitvvhRsDgSGttavftkyLskvske.wkekvgaGktvnwpag.vgakgNdGvaavvketpgaigYvelsyakenklsvaalknsaGkfvkpdaes....ikaaaagvkista...kedaksltdapgdeayPivaatylivlkkqkd...eekakalkaflewalt..egqkaaddldyiplPesvvkkvkkavnt 313
                  +g+G+t p + + +++++ + + ++  +++y+++GS++Gi+++  + tv    fg+ D p+s++++ + + ++ ++lp+ +ga+      p  + e+L+L+  +laki + +i+ W+d++i+ +NP++k+P+  +itv+hR  gS  ta  t+yL +v +  w e+   Gkt++w  + +g +g +G+++++k++pg+igY+++++ +++ l++ +l n+a k++  ++ +    i aaa+ + ++++      a+ l+++ g +++Pi+a+ty+ v k+      ++    +kafl+         +  ++ +++ +  ++ +k+ k ++ 
  MMETSP1061-20121228|10112_1  28 HGSGTTNPSKCYWTIMDQMQIQSKNPIRMTYRAVGSSTGIAEFIGNgTVSenmFGSGDIPMSQEQFDEFPqGTFFHLPVLLGAITFFHSAPTGD-EKLNLSPCTLAKILKREITDWGDDEIKLANPNLKVPKpSPITVAHRVKGSSSTASITQYLHQVCPSeWPEE-LVGKTIEWKQDtIGCEGSGGMSSCIKDIPGTIGYIDMGHGHAEGLPEIELLNAAQKYISTKEAAelggIMAAAENADLPETlegSFAAVNLLNQGGVNTWPITAMTYIYVKKDLTFiedPASQSLIKAFLNALYSdeYITQCEKEFGFVRIGGELRDKALKSIEE 357
                  799****************9999999****************986526645559************999977899***************9988.66**********************************7479********************9998766*966.58*******9989*********************************************98776522225666666666665776667889*********************997544339999999***996665213345778889999999998888887765 PP

>> TIGR02029  AcsF: magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.8e-05     0.057     209     318 ..     302     408 ..     296     418 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.8e-05
    TIGR02029 209 lksdPkllndskaklwirffllavystmylrdherskfyealGldatefdlqvvrktseiskrifPvvldvedPrfrrkldrlvvlsekieaikakgdakliklikrlgl 318
                  +k d  +++d  ++  i+ fl a+ys  y++++e+   +  +G + ++  l+ +++   +s+ +    ++++  ++    +r  v+s+k ++  + ++ kl+++i++l+l
  MMETSP1061-20121228|10112_1 302 VKKDLTFIEDPASQSLIKAFLNALYSDEYITQCEKEFGFVRIGGELRDKALKSIEEIV-TSAAAPEWSFEIDTEKYAG--QRNYVISKKRQSYSEIEQDKLVEMINKLSL 408
                  6778889999999999********************99*******9999999888764.4555556788999999986..67777888888888888889*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.44
# Mc/sec: 1556.87
//
Query:       MMETSP1061-20121228|10117_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.38
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|10131_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1061-20121228|10130_1  [L=1551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1481.0   1.1          0 1480.7   0.8    1.0  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   4.8e-132  438.1   0.0     3e-131  435.5   0.0    2.1  2  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
    1.5e-19   66.8   0.6    4.7e-11   38.7   0.1    2.2  2  TIGR01235 pyruv_carbox: pyruvate carboxylase
    1.5e-17   61.4   0.5      2e-09   34.6   0.0    2.6  3  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    1.8e-17   61.2   0.1    4.9e-08   30.1   0.0    2.3  2  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
      2e-16   57.7   0.5    9.2e-08   29.2   0.0    2.4  2  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    4.6e-16   55.5   0.1    1.3e-07   27.5   0.0    2.6  3  TIGR02712 urea_carbox: urea carboxylase
    3.1e-10   37.6   0.1    2.4e-08   31.4   0.0    3.1  2  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    3.6e-10   36.6   0.0    7.4e-10   35.5   0.0    1.4  1  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
    1.6e-09   35.1   0.0    0.00018   18.5   0.0    2.4  2  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
    4.7e-09   33.2   0.1    4.5e-05   20.2   0.0    2.5  2  TIGR03909 pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
    8.3e-09   33.3   0.0    2.1e-08   32.0   0.0    1.7  1  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
    1.3e-08   32.3   0.0    8.9e-05   19.8   0.0    2.4  2  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    4.5e-07   27.3   0.0    0.00052   17.2   0.0    2.3  2  TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
    7.4e-07   25.3   0.0    3.2e-06   23.2   0.0    1.9  2  TIGR01815 TrpE-clade3: anthranilate synthase
      2e-06   24.7   0.5      0.001   15.8   0.0    2.3  2  TIGR00877 purD: phosphoribosylamine--glycine ligase
    6.5e-06   22.2   0.1     0.0029   13.5   0.0    2.1  2  TIGR02068 cya_phycin_syn: cyanophycin synthetase
     0.0068   14.1   0.0      0.055   11.1   0.0    2.2  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit


Domain annotation for each model (and alignments):
>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1480.7   0.8         0         0       3    1051 ..     462    1516 ..     460    1517 .. 0.97

  Alignments for each domain:
  == domain 1    score: 1480.7 bits;  conditional E-value: 0
    TIGR01369    3 redikkvlviGsGpivigqAaEFDYsGsqalkalkeegievvLvnsniAtvmtdeel.....adkvYiePltveavekiiekErpDailltlGGqtaLnlaveleekGvLekygvkllGtkveaikkaedRekFkealkeineevakseivesveealeaaeeigyPvivRaaftlgGtGsgiaeneeelkelvekalkaspikqvlvekslagwkEiEyEvvRDskdnciivcniEnlDplGvHtGdsivvaPsqtLtdkeyqllRdaslkiirelgvegecnvqfaldPeskryvviEvnpRvsRssALAskAtGyPiAkvaaklavGysLdelkndvtketvAsfEPslDYvvvkiPrwdldkfekvdrklgtqmksvGEvmaigrtfeealqkalrsleekllglklkekeaesdeeleealkkpndrRlfaiaealrrg.vsveevyeltkidrffleklkklvelekeleeeklkelkkellkkakklGfsdeqiaklvkvseaevrklrkelgivpvvkrvDtvaaEfeaktpYlYstyeeekddvevtekkkvlvlGsGpiRigqgvEFDycavhavlalreagyktilinynPEtvstDydiadrLyFeeltvedvldiiekekvegvivqlgGqtalnlakeleeagvkilGtsaesidraEdRekFsklldelgikqpkgkeatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryleeavevskekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniqfvvkdeevyviEvnvRasRtvPfvskalgvplvklavkvllgkkleele..kgvkkekksklvavkaavfsfsklagvdvvlgpemkstGEvmgigrdleeallkallaskakikkkgsvllsvkdkdkeellelakklaekglkvyategtakvleeagikaevvlkvseea...ekilellkeeeielvinltskkkkaaekgykirreaveykvplvteletaeallea 1051
                   r d++kvl++GsG+ +igqA+EFDYsG qa+kalkeeg evvL+n+niA v+t+ +      ad+++++P+t+e+ve++i+kE+pD+i++++GGqtaLn+ave+ e+G+ ekygv++lGt+++++ ++edR++F++ l+eine++aks ++++v+ea+eaa++igyP+++R+af+lgG Gsg++++e+ l+ +++kal++s  +q+lveks++gwkE+EyEvvRD++dnc++vcn+En+DplG+HtGds+v+aPsqtL+d+ey++lR+++++ +r+lg++gecn+q+al+Pes +y +iEvn+R+sRssALAskAtGyP+A vaakl +G+ ++e+ n vtk+t A+fEPslDY+v+kiPrwd+ kfe+v+r++g+ mksvGEvm+igrt+ee++qka+r+++ ++ g++ + +  e+ e+l+++l  p+drR+faia+a++++ +sv+e++++tkid++fl++l+++v++ +++e+++l+ l+ el+  akk+Gfsd+qia+++k se++vr+ r  lgi pvvk++Dt+aaE++a+t+YlY ty+++++dve ++   v vlGsG++Rig+++EFD+c+v+a+++lr++gyk+ +inynPEtvstDyd++dr+yFeel+ e+vldi+e+++++gv+v++gGq+++ la  l++agvk+lGtsa+ id+aEdR+kFs+++de+g++qp++ e+t+  +a ++a+++gyPvlvRpsyvl+G+am+++ n+e+l+++l+ea++vsk++Pv+i+ ++e a+E++ D v +++e+++a+i eHiE+aGvHsGD+tlvlppq+ls+ +k+++++++kki+k+l+++G++niqfv+k+ +v  iE nvRasR++Pfvsk++gv++++ a++++++++ ++++  +  +++  s +v+vka++fsf++l+g+d+vlg+em+stGEv+++g++ eea+lk++l++++k++kk ++l+sv+++ ++e+++ a +l e+g+++yate+takvle++++ ++ v   ++++   +++ el+k+++i +vin++++++k+ e++y++rr+av+y+vpl+t++++++++++a
  MMETSP1061-20121228|10130_1  462 RPDVHKVLLLGSGGTSIGQAGEFDYSGGQAIKALKEEGKEVVLMNPNIASVQTNMDSksefkADHTFFLPVTPEFVEEVIKKEKPDGIVVSMGGQTALNCAVEMYEAGIFEKYGVEVLGTPIDVVINTEDRQLFSDRLHEINEKIAKSYTADTVDEAVEAAKDIGYPLMIRSAFALGGLGSGMCYDEDHLRDMANKALSTS--PQILVEKSMKGWKEVEYEVVRDAYDNCVTVCNMENFDPLGIHTGDSMVMAPSQTLSDEEYHMLRNTAIRTVRHLGIIGECNIQYALHPESLEYCIIEVNARLSRSSALASKATGYPLAFVAAKLCLGIPMTEVINAVTKKTQAAFEPSLDYIVTKIPRWDMTKFEHVSREIGSAMKSVGEVMSIGRTMEESFQKAMRMVDPAIAGFEPH-DRFETMEDLKQELAVPTDRRIFAIAQAMHEKsLSVQEIHDITKIDHWFLRRLEHIVQIRNRMEDVTLDTLDPELMLDAKKVGFSDSQIANIYKCSEDDVRSKRIGLGIEPVVKQIDTLAAEYPAATNYLYMTYHGTENDVEAESG-GVAVLGSGAYRIGSSIEFDWCGVSAIRSLRKMGYKATMINYNPETVSTDYDECDRMYFEELNRERVLDIYERDNMNGVVVSVGGQIPNGLAIPLADAGVKLLGTSAKMIDNAEDRNKFSAMIDEIGVQQPRWLELTDSGSAIDFANDVGYPVLVRPSYVLSGAAMNVAWNDEQLKAFLNEAATVSKDHPVVISDFIEGATEIEFDGVGKDGEIIAAAIHEHIENAGVHSGDATLVLPPQTLSDYTKHRVRDAAKKIVKRLNITGPVNIQFVAKGTDVMCIETNVRASRSFPFVSKTMGVDFIEAATRAMVDEDTSDMNlpTLETRDRPSGYVGVKAPMFSFTRLRGSDPVLGVEMASTGEVACFGKTREEAFLKSMLSTGFKMPKK-NILVSVQESLQDEFTHSAWQLIEQGYTLYATENTAKVLEKNKVPCTIVAYPTDTEsdkPNARELIKSGDIGMVINIPTHESKKLEDNYSMRRTAVDYGVPLLTNTQLVKVFANA 1516
                   779**************************************************6432222249******************************************************************************************************************************************..9*************************************************************************************************************************************************************************************************************998.55666778899****************986549*******************************************************************************************************999999999.*************************************************************************************************************************************************************************************************************************************************************************************************************************999984222345566789****************************************************999.57788889999*************************************987766556699**************************************************9987 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.5   0.0  1.3e-133    3e-131       2     360 ..      83     445 ..      82     446 .. 0.96
   2 ?   -0.5   0.0      0.43        97     205     225 ..     534     554 ..     489     562 .. 0.73

  Alignments for each domain:
  == domain 1    score: 435.5 bits;  conditional E-value: 1.3e-133
    TIGR01368   2 tlvledGtvfegksfgaekevvGevvFnTsmtGYqEiltDpsYkgqivvltyplignygvneeda..........eskkikvkglvvkelskevsnyrakesLeeflkeegivaiegvDTRalvkklRekgsmkavisteksekeelvekakespkvkevnlvkevstkeayeleqkakkegkklrvvvidlGvKenilreLvkrgvevtvvpadtsaeeikklnpdgillsnGPGdPaaveeaietvkkllea....kiPifGIclGhqllalalgaktyklkfGhrGaNhpvkdlktgrveitsqNHgyavdeeslkeeelevthvnlnDgtveglehkelpvfsvQyHPeaspGphdteylFdefvelik 360
                  ++ ledGt++ gksfg+++++ GevvF+T+m+GY+E +tDpsY+gqi++lt+p++gnygv++ ++          es+ki+v+gl+v+++s+++s+++a +sL +++ke+g++++ g+DTR+l+kk+Re+g+++++i+ +    +  v + ++ ++++  +lv+evs+ke++ + +     g+ ++v+++d+G+K+ni+r+Lvkrgve+tvvp+d+++++ ++l+ dg++lsnGPGdP++++e+ie+++k+++      +Pi+GIclG+ql++la+g++  kl fGhrG+N+pv +++tg+++it qNHg+++d ++l+ + ++  ++n nDg++eg++h++ p+f+ Q+HPea++Gp+dte++Fd+f+e+ k
  MMETSP1061-20121228|10130_1  83 KIHLEDGTTIIGKSFGSHESAEGEVVFATGMVGYPENMTDPSYQGQILTLTTPMVGNYGVPDPKTldeyglpkyfESDKIHVNGLIVQDYSHHYSHWNAASSLGDWMKEQGVPGLSGIDTRMLTKKIRESGALMGRIEVDL---DAPVPDFSTIQNANLRHLVDEVSIKEKVVYGK-----GNATKVIAVDCGMKNNIIRHLVKRGVELTVVPWDYPFASEMHLY-DGLFLSNGPGDPTMCKETIEELEKVISCpddqVKPIYGICLGNQLMGLAAGGQAQKLPFGHRGQNQPVLNHQTGECYITPQNHGFVIDCSTLRPG-WKTLFTNANDGSNEGIAHTSRPYFTAQFHPEAASGPTDTEFMFDTFLEACK 445
                  689***********************************************************9999************************************************************************999...56666666667777779***********9994.....56678*********************************999999.**************************86666689********************************************************98877.**********************************************99876 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.43
    TIGR01368 205 adtsaeeikklnpdgillsnG 225
                   ++  e ikk +pdgi++s G
  MMETSP1061-20121228|10130_1 534 PEFVEEVIKKEKPDGIVVSMG 554
                  344557799**********88 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.7   0.1   2.1e-13   4.7e-11     136     308 ..     610     779 ..     537     804 .. 0.84
   2 !   26.3   0.0   1.2e-09   2.7e-07      95     314 ..    1110    1323 ..    1101    1340 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.7 bits;  conditional E-value: 2.1e-13
    TIGR01235 136 gpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferdc..svqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedt.kfyfievnpriqvehtvteeitGidi 308
                    ++t++e+++ ak+iGyP+++++a+  GG G  +  +e++++d  ++a s +       ++ vek ++  k +e  ++ d   n v + + +    +       + +aP+++ls+e  + l ++a++  ++ + i+   +++ +  ++ ++  ievn+r+    +++ + tG  +
  MMETSP1061-20121228|10130_1 610 YTADTVDEAVEAAKDIGYPLMIRSAFALGGLGSGMCYDEDHLRDMANKALSTS------PQILVEKSMKGWKEVEYEVVRDAYDNCVTVCNMENfdPLGIHTGDSMVMAPSQTLSDEEYHMLRNTAIRTVRHLGIIGECNIQYALHPESlEYCIIEVNARLSRSSALASKATGYPL 779
                  4689***************************9999*********999988764......689***********************99886554311556666777889***********************************8887776999********999999999998654 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 1.2e-09
    TIGR01235   95 vekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnv....vhlferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedtkfyfievnpriqvehtvteeitGidivkaqik 314 
                     +aG+  +G +a+++d+  d+ +   +  ++gv   P      ++   + dfa++ GyPv+++ +y   G  m v  ++e+++  ++    ea +   +  v +  +ie +  ie   +g  +G++    +h +  +  v   +     v P ++ls+  ++++ +aa k+ k+ n ++   ++f+  + t+   ie n r         +  G+d ++a  +
  MMETSP1061-20121228|10130_1 1110 LADAGVKLLGTSAKMIDNAEDRNKFSAMIDEIGVQQ-PRW-LELTDSGSAIDFANDVGYPVLVRPSYVLSGAAMNVAWNDEQLKAFLN----EAATVSKDHPVVISDFIEGATEIEFDGVGK-DGEIiaaaIHEHIENAGVHSGDA--TLVLPPQTLSDYTKHRVRDAAKKIVKRLNITGPVNIQFVA-KGTDVMCIETNVRASRSFPFVSKTMGVDFIEAATR 1323
                   5799****************9999888888888764.444.4467788999**************************99999887665....5556666789***************99985.45441111566666666766555..5568***************************999999965.55699*************999999****9988655 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   8.6e-12     2e-09     138     309 ..     612     780 ..     567     805 .. 0.82
   2 ?   -0.0   0.0      0.28        64     264     349 ..    1053    1135 ..    1045    1146 .. 0.80
   3 !   24.2   0.0   1.3e-08   2.9e-06      96     314 ..    1111    1323 ..    1103    1331 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 8.6e-12
    TIGR00514 138 vedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdc..siqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflld.kegefyflemntriqvehpvtemvtgvdli 309
                   ++v+eave ak+iGyp++i+++   GG G  +  +ed+l ++ +      ka  + +++ +ek ++  + ve +v+ d y n v +++ +    +   +   +  aps +l++e  + + ++a+++++++g +g   +++ l+ ++ e+  +e+n+r+    +++ + tg  l 
  MMETSP1061-20121228|10130_1 612 ADTVDEAVEAAKDIGYPLMIRSAFALGGLGSGMCYDEDHLRDMAN------KALSTSPQILVEKSMKGWKEVEYEVVRDAYDNCVTVCNMENfdPLGIHTGDSMVMAPSQTLSDEEYHMLRNTAIRTVRHLGIIGECNIQYALHpESLEYCIIEVNARLSRSSALASKATGYPLA 780
                  67899****************999999999999999999976543......34446799*************************9987655322566777777888**********************************98772556799*******99888888877776665 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.28
    TIGR00514  264 ksigytgaGtveflldkegefyflemntriqvehpvtemvtgvdlikeqirvakGeklslkqedvklkGhaiecrinaedpsknfl 349 
                   + i+y    tv   +d+ +++yf e+n    ++    + + gv ++    ++ +G  ++l    vkl G + +   naed  ++f 
  MMETSP1061-20121228|10130_1 1053 TMINYNP-ETVSTDYDECDRMYFEELNRERVLDIYERDNMNGV-VVSVGGQIPNGLAIPLADAGVKLLGTSAKMIDNAEDR-NKFS 1135
                   5666654.6888899999*********8776776677777787.4555667899*******************999**998.6665 PP

  == domain 3    score: 24.2 bits;  conditional E-value: 1.3e-08
    TIGR00514   96 eesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladk...yGnvvylgerdcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkegefyflemntriqvehpvtemvtgvdlikeqir 314 
                   +++g++++G sa+ i    d++   +++ ++gv   p    l  d   a++ a+++Gypv+++ +    G  + v+ ++++l   l    +ea++  +++ v +  fie    +e+  ++ +      +++    +  +      l+   p  +l++  ++++ +aa k++k ++ tg   ++f+ +   +   +e n r     p   + +gvd+i++  r
  MMETSP1061-20121228|10130_1 1111 ADAGVKLLGTSAKMIDNAEDRNKFSAMIDEIGVQQ-PRWLEL-TDSGSAIDFANDVGYPVLVRPSYVLSGAAMNVAWNDEQLKAFL----NEAATVSKDHPVVISDFIEGATEIEFDGVGKDgeiIAAAIHEHIENAGVHSGDATLV--LPPQTLSDYTKHRVRDAAKKIVKRLNITGPVNIQFVAK-GTDVMCIETNVRASRSFPFVSKTMGVDFIEAATR 1323
                   57788999999999999999999999999999875.544444.566789***************************9998876555....699999999*****************9886431113456666667788888888777..68899999***************************988.778999***********************98766 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   6.7e-10   1.5e-07      83     285 ..     568     762 ..     474     763 .. 0.76
   2 !   30.1   0.0   2.1e-10   4.9e-08     103     284 ..    1127    1299 ..    1106    1322 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 6.7e-10
    TIGR01205  83 qglLellgipyvGsgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafeydeevlveeaikg.relevsvlekeealpiieiveekekedFydYeaKYldgsaelvipaelseeeeekikelalkaykalgcrglaRvDffleke.geiylnEiNt 285
                  +g++e +g+  +G  +   + + d+ l+   l++ + ++a+  +    +e      +e+++++g+p++++ a +   +G   + +e++l++++++a++ + ++lve+ +kg +e+e  v++ +   +++ +++ ++    +d     + +s  ++ +  ls+ee++ +++ a++++++lg  g   + + l+ e  e+ + E+N 
  MMETSP1061-20121228|10130_1 568 AGIFEKYGVEVLGTPIDVVINTEDRQLFSDRLHEINEKIAKSYTADTVDE-----AVEAAKDIGYPLMIRSAFALGGLGSGMCYDEDHLRDMANKALSTSPQILVEKSMKGwKEVEYEVVR-DAYDNCVTVCNMEN----FDPLGIHTGDSMVMAPSQTLSDEEYHMLRNTAIRTVRHLGIIGECNIQYALHPEsLEYCIIEVNA 762
                  58888888888888888888888888888888888888888776632222.....3457899**********99999*******************************88768*******9.77778888888888....5555555655566666666**********************************999*******95 PP

  == domain 2    score: 30.1 bits;  conditional E-value: 2.1e-10
    TIGR01205  103 lsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafey..deevlveeaikg.relevsvlekeealpiieiveekekedFydYeaKYldgsaelvipae.lseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiN 284 
                    + d+  +  ++++ g++++++  l+  + +        ++++g+pv+v+p+   S   ++++ ++e+l+++l+ea+ +  d+ v++  +i+g  e+e   ++k+  + +++i e++e       +a   +g+a lv+p + ls+  ++++++ a+k++k l+  g + + f+ + +  ++  E N
  MMETSP1061-20121228|10130_1 1127 NAEDRNKFSAMIDEIGVQQPRWLELT-DSGSAI----DFANDVGYPVLVRPSYVLSGAAMNVAWNDEQLKAFLNEAATVskDHPVVISDFIEGaTEIEFDGVGKDGEIIAAAIHEHIE-------NAGVHSGDATLVLPPQtLSDYTKHRVRDAAKKIVKRLNITGPVNIQFVAKGT-DVMCIETN 1299
                   5567777778999************4.333323....47789*********************************986522677******98747********9**999999999999.......77788888766666656******************************99855.77777766 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0     4e-10   9.2e-08      52     254 ..     535     744 ..     524     811 .. 0.75
   2 !   26.3   0.1   3.1e-09     7e-07      92     272 ..    1122    1302 ..    1074    1326 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 4e-10
    TIGR01142  52 dalravierekPdfivpeie.......aiatdaLlelekegyevvPnaratkltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvrav.dgvvefc.....aPiGhrqedgdykesWqPqelsekaleeakeiakrvvdaLGGlGlfGv 254
                  +++++vi++ekPd iv  +        a+++ +   +ek g+ev+ +   + +  +  +l     +e++ + ak   ad+++e  ea+++iG+P+++++  +  G G+ ++  ++++++      ++a +++++++ve+ ++   e+   +vr + d+ v+ c     +P+G +   gd +     q+ls++  +  ++ a r v  LG  G   +
  MMETSP1061-20121228|10130_1 535 EFVEEVIKKEKPDGIVVSMGgqtalncAVEMYEAGIFEKYGVEVLGTPIDVVINTEDRQLFSDRLHEINEKIAKSYTADTVDEAVEAAKDIGYPLMIRSAFALGGLGSGMCYDEDHLRDMA----NKALSTSPQILVEKSMKGWKEVEYEVVRDAyDNCVTVCnmenfDPLGIHT--GDSMVMAPSQTLSDEEYHMLRNTAIRTVRHLGIIGECNI 744
                  7899**********998764222222244555555689999****99988888766666666777888999999999**************************************998764....56678899999999998888888777776415555555222226888654..444444455778888888888888888888887775555 PP

  == domain 2    score: 26.3 bits;  conditional E-value: 3.1e-09
    TIGR01142   92 aratkltmnreglrrlaaeelglptakyefadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargsaerviveefidfdveitlltvravdg..vvefcaPiGhrq.edgdykesWqPqelsekaleeakeiakrvvdaLGGlGlfGvelfvkgdevifsevsprP 272 
                   a+ +  + +r++    +++e+g++  ++   +  ++  + ++++G+P++v+p    sG    v  ++e++++  +ea++   ++++ v++ +fi+  +ei    v + ++    +  + i     + gd +    Pq+ls+ +++++++ ak++v+ L  +G   ++++ kg +v+  e  +r 
  MMETSP1061-20121228|10130_1 1122 AKMIDNAEDRNKFSA-MIDEIGVQQPRWLELTDSGSAIDFANDVGYPVLVRPSYVLSGAAMNVAWNDEQLKAFLNEAATV--SKDHPVVISDFIEGATEIEFDGVGKDGEiiAAAIHEHIENAGvHSGDATLVLPPQTLSDYTKHRVRDAAKKIVKRLNITGPVNIQFVAKGTDVMCIETNVRA 1302
                   555666667777654.578999999999888888999999********************************99999865..67789***************999998883222233444333313578888999****************************************999988876 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   5.7e-10   1.3e-07     137     305 ..     613     777 ..     607     806 .. 0.84
   2 !   24.6   0.0   4.4e-09     1e-06      17     323 ..    1042    1333 ..    1037    1370 .. 0.80
   3 ?   -1.6   0.0      0.35        80     110     145 ..    1484    1519 ..    1465    1522 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 5.7e-10
    TIGR02712 137 esleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvvalgerdC..slqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgl 305
                  ++++ea+eaa++igyP+m++s+   GG+G   + ++++l++  ++      +  ++  + +ek ++  + ve  ++ d   + v++ + +    l       +  +P+  l++e  + l+++a + ++++   +   +++   ++  e+  +evn+rl    +++ + tg 
  MMETSP1061-20121228|10130_1 613 DTVDEAVEAAKDIGYPLMIRSAFALGGLGSGMCYDEDHLRDMANK------ALSTSPQILVEKSMKGWKEVEYEVVRDAYDNCVTVCNMENfdPLGIHTGDSMVMAPSQTLSDEEYHMLRNTAIRTVRHLGIIGECNIQYALHPESLEYCIIEVNARLSRSSALASKATGY 777
                  679**********************************99876443......33356789********************999888765443124666666666679****************************************************8877777777665 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 4.4e-09
    TIGR02712   17 irtlkklgirsvavysdadkasqhvkdadeavalgeataaesylkidkileiakktgaeaiiPGyGflsenaafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllpGtgllesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilG.dgkGkvvalger..dCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaageapdld 323 
                   ir l+k+g ++  +  +++  s+  ++ d+ +           l+ +++l+i ++ + + ++   G    n  +a  +++ag+ ++G +++ +++   + +  ++  + gv   +  + l++   a++ a+++gyPv+++ +    G  ++   + e+l++  ++    +++  +d  v +  f+e a  +e   +G dg+  + a+ e   +  +   +  +    P   l++ +++++++aa+k+++ +n    G v+  + +k  ++  +e n r     p   + +g+d++e   r   +e+ +  
  MMETSP1061-20121228|10130_1 1042 IRSLRKMGYKATMINYNPETVSTDYDECDRMYF--------EELNRERVLDIYERDNMNGVVVSVGGQIPN-GLAIPLADAGVKLLGTSAKMIDNAEDRNKFSAMIDEIGVQQPRWLE-LTDSGSAIDFANDVGYPVLVRPSYVLSGAAMNVAWNDEQLKAFLNE----AATVSKDHPVVISDFIEGATEIEFDGVGkDGEIIAAAIHEHieNAGVHSGDATL--VLPPQTLSDYTKHRVRDAAKKIVKRLNIT--GPVNIQFVAKGTDVMCIETNVRASRSFPFVSKTMGVDFIEAATRAMVDEDTSDM 1333
                   677777777777777777777766666665543........227788999999999988888888776655.57889999***************99999999999999998766555.5666889********************************9877665....55666799****************988857887788888872244555555555..57999*********************976..5666666689999***************************99888777765544 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.35
    TIGR02712  110 rklGlkhtarelaeaagvPllpGtgllesleealea 145 
                   +kl   ++ r  a   gvPll  t+l++   +a+++
  MMETSP1061-20121228|10130_1 1484 KKLEDNYSMRRTAVDYGVPLLTNTQLVKVFANAVQE 1519
                   55666788999*****************99999886 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.0   1.1e-10   2.4e-08      11     185 ..     269     444 ..     261     447 .. 0.68
   2 ?    1.6   0.0      0.15        33      34      75 ..     538     580 ..     530     584 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 1.1e-10
    TIGR00888  11 aqliaRrlrelgvyselvpatttleeikevepkgiilsGgPes..vkaenaekvdeki...felgvPvlGiCyGmqllakalGgeveraekreygkaelevldedelfkglekelkvWmshgDkvkelPegfkvl.aksencpvaalkkeekklyGvqfhPevthtekGke.llenfvkdvc 185
                  ++ i R l + gv+  +vp++ +     +    g+ ls gP      +e  e++++ i    +   P+ GiC+G ql+  a Gg+ ++      g+ +  + +++     +  + + ++   D + +l  g+k+l ++++    + +++++++ +  qfhPe +   + +e +++ f++  c
  MMETSP1061-20121228|10130_1 269 KNNIIRHLVKRGVELTVVPWDYPFASEMH-LYDGLFLSNGPGDptMCKETIEELEKVIscpDDQVKPIYGICLGNQLMGLAAGGQAQKLPFGHRGQNQPVLNHQTG-ECYITPQNHGFV--ID-CSTLRPGWKTLfTNANDGSNEGIAHTSRPYFTAQFHPEAASGPTDTEfMFDTFLE-AC 444
                  56799*****************9865443.447*****9997421334444444444422256778******************9988887777776644444332.222222222222..34.4455556665516677799*******************99877665525666666.55 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.15
    TIGR00888  34 leeikevepkgiilsGgPesvkaenaekvdekife.lgvPvlG 75 
                  +e ik+ +p gi++s g +   +   e +++ ife  gv vlG
  MMETSP1061-20121228|10130_1 538 EEVIKKEKPDGIVVSMGGQTALNCAVEMYEAGIFEkYGVEVLG 580
                  567999*********9999999998888888888636888887 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   3.2e-12   7.4e-10      32     204 ..     280     444 ..     262     452 .. 0.77

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 3.2e-12
    TIGR01823  32 rvsvitvhsDkldddllellqlfdaivvGPGPGdPnv.akdvgilsevfelanldevPvlGiCLGfqslcLaqGadierlplplhGqvsevktsdaaifegvssvkstryhsLyankesidsllalilledeedqilmsvkakkkPifGvqyhPesvksekesvkllknflkla 204
                   v  ++v +D +   +  +++l+d + +  GPGdP    + +  l++v    + +  P+ GiCLG q + La G + ++lp+   Gq + v    ++  + ++     + h + +   +        l  + +d     + ++ +P+f  q+hPe+ +   ++  ++  fl+ +
  MMETSP1061-20121228|10130_1 280 GVELTVVPWDYP---FASEMHLYDGLFLSNGPGDPTMcKETIEELEKVISCPDDQVKPIYGICLGNQLMGLAAGGQAQKLPFGHRGQNQPVLNH-QTGECYITP----QNHGFVIDCSTLRPGW-KTLFTNANDGSNEGIAHTSRPYFTAQFHPEAASGPTDTEFMFDTFLEAC 444
                  477788888876...5667899*************9956678899999999988888******************************9988554.444555544....4455555555554422.2333344444556899***************999988889999998765 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.1e-05    0.0048      62     129 ..     565     633 ..     550     644 .. 0.91
   2 !   18.5   0.0   7.8e-07   0.00018      68     159 ..    1110    1202 ..    1094    1231 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.1e-05
    TIGR02144  62 lasaalleelGvkvin.sseviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKP 129
                  ++ a ++e+ Gv+v+  + +v+i+++d+ + + +L + +  + k+++a   ++a+++a+++GyP++++ 
  MMETSP1061-20121228|10130_1 565 MYEAGIFEKYGVEVLGtPIDVVINTEDRQLFSDRLHEINEKIAKSYTADTVDEAVEAAKDIGYPLMIRS 633
                  688999********972579*********************************************9875 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 7.8e-07
    TIGR02144   68 leelGvkvin.sseviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKPveGsWGrlvskvkdkdeaeallehkevlkg 159 
                   l ++Gvk +  s+++i +++d+   ++ + + gv +P++   +d  +a+  a+++GyPv+++P     G  ++ + + ++++a+l+   ++++
  MMETSP1061-20121228|10130_1 1110 LADAGVKLLGtSAKMIDNAEDRNKFSAMIDEIGVQQPRWLELTDSGSAIDFANDVGYPVLVRPSYVLSGAAMNVAWNDEQLKAFLNEAATVSK 1202
                   5667788776145678899***99999*************************************99999999999999999987765544443 PP

>> TIGR03909  pyrrolys_PylC: pyrrolysine biosynthesis protein PylC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00022     0.049     121     269 ..     623     779 ..     596     810 .. 0.78
   2 !   20.2   0.0     2e-07   4.5e-05     122     279 ..    1163    1327 ..    1157    1340 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00022
    TIGR03909 121 pdsefPvlvkPscesssegvriindrkeleel..lklesednlvveeyleG.esvsleviGdkgnyavvkiteleid....atydCkrvlaPae.ldlekkdefrelalklaaelnlkGimdvevilheeklk..vleidarlPsqtPivvykssGinl 269
                   d ++P++++ + + +  g  + +d+++l+++    l + ++++ve  ++G + v  ev+ d  +  v      ++d     t d   v+aP + l+ e  + +r+ a++  ++l + G  +++  lh+e l   ++e++arl         k++G  l
  MMETSP1061-20121228|10130_1 623 KDIGYPLMIRSAFALGGLGSGMCYDEDHLRDManKALSTSPQILVEKSMKGwKEVEYEVVRDAYDNCVTVCNMENFDplgiHTGDS-MVMAPSQtLSDEEYHMLRNTAIRTVRHLGIIGECNIQYALHPESLEycIIEVNARLSR-SSALASKATGYPL 779
                  46889**************************954456789***********66799****99988766555555566333335566.78899873677888999************************99885559******954.4445567777655 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 2e-07
    TIGR03909  122 dsefPvlvkPscesssegvriindrkeleellkle....sednlvveeyleGesvsleviGdkgnyavvkit.eleidat..y..dCkrvlaPaeldlekkdefrelalklaaelnlkGimdvevilheeklkvleidarlPsqtPivvykssGinlvelllkafte 279 
                   d ++Pvlv+Ps   s   +++  ++++l+ +l+      +   +v+ +++eG +  +e  G++++ +++  + + +i+++  +  d   vl P  l+   k++ r+ a k+ + ln+ G ++++ + + +++  +e + r     P  v k+ G++++e  ++a ++
  MMETSP1061-20121228|10130_1 1163 DVGYPVLVRPSYVLSGAAMNVAWNDEQLKAFLNEAatvsKDHPVVISDFIEGAT-EIEFDGVGKDGEIIAAAiHEHIENAgvHsgDATLVLPPQTLSDYTKHRVRDAAKKIVKRLNITGPVNIQFVAKGTDVMCIETNVRASRSFPF-VSKTMGVDFIEAATRAMVD 1327
                   6789***********9************999876412213456899******75.67777777776666543144566542234489999*******99*****************************************8777775.6899*******99999876 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   9.1e-11   2.1e-08      14     178 ..     271     428 ..     263     443 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 9.1e-11
    TIGR00566  14 nlvqlleelgaevvvkrndsltlqeieallpllsivisPGPctPdeaaiss...leliehlaGkl.PilGvClGhqalaqafGadvvraekvkhGkvseiehngaavfaglfnPdalkatryhslvveaetldtllevtaleeeeieimairhrdlpleGvqfhPesil 178
                  n++++l ++g e++v   d    +e+     l    +s GP+ P      +    ++i     ++ Pi+G+ClG q +++a G++  ++     G+ + +  ++    +    P      + h +v++  tl    +   ++ ++    +i h   p +  qfhPe+  
  MMETSP1061-20121228|10130_1 271 NIIRHLVKRGVELTVVPWDYPFASEMHLYDGL---FLSNGPGDPTMCKETIeelEKVISCPDDQVkPIYGICLGNQLMGLAAGGQAQKLPFGHRGQNQPVLNHQ--TGECYITP------QNHGFVIDCSTLRPGWKTLFTNANDGSNEGIAHTSRPYFTAQFHPEAAS 428
                  77777788888888777777777777655554...5778888776544332222678888888999*******************9999888888888875554..33445566......89**********99988888888887889*****************865 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00043     0.097      56     152 ..     559     656 ..     492     669 .. 0.83
   2 !   19.8   0.0   3.9e-07   8.9e-05      70     174 ..    1112    1216 ..    1103    1244 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00043
    TIGR00768  56 vssdrglavlraleslGveviNss.qaienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaeklle 152
                  ++   +++ + ++e+ Gvev+  + +++ n +d+ l s +L + +  + k+++a   +ea +++  ig+P+ ++++f   G +   + d+++++++ +
  MMETSP1061-20121228|10130_1 559 LNCAVEMYEAGIFEKYGVEVLGTPiDVVINTEDRQLFSDRLHEINEKIAKSYTADTVDEAVEAAKDIGYPLMIRSAFALGGLGSGMCYDEDHLRDMAN 656
                  555667788999*********87637999************************************************999999999999999988765 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 3.9e-07
    TIGR00768   70 slGveviN.ssqaienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaekllealeqlkekykvflvQeyikksg 174 
                    +Gv+++  s ++i+na+d+ + sa++ + g+ +p++l +++  +a ++++ +g+Pv ++p     G ++  + + +++++ l+    + +++  +++ ++i+ + 
  MMETSP1061-20121228|10130_1 1112 DAGVKLLGtSAKMIDNAEDRNKFSAMIDEIGVQQPRWLELTDSGSAIDFANDVGYPVLVRPSYVLSGAAMNVAWNDEQLKAFLNEAATVSKDHP-VVISDFIEGAT 1216
                   5677777514579******************************************************999999999999999888888885554.56678887655 PP

>> TIGR01161  purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0     0.002      0.46      93     247 ..     586     744 ..     566     764 .. 0.81
   2 !   17.2   0.0   2.3e-06   0.00052      88     296 ..    1120    1332 ..    1109    1339 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.002
    TIGR01161  93 lallqdkltqkqllqklglavpeflvelkeeeelekaleelglpvvlKarkggYDGrGqfvikseeeleqalkalgdk..elivEefvkfekElsvivaRskeGevafyPvvenlqkdgilr...lvvapa.alpeklqkkaeelarklveeldlvGvlav 247
                  +  ++d+     +l++ + ++++ ++ +++ +e  +a++++g+p+++++   +  G G  +  +e +l++++++   +  +++vE+ +k  kE+   v+R++  ++++   +en    gi +   +v+ap  +l ++  +  ++ a + v++l+++G   +
  MMETSP1061-20121228|10130_1 586 VINTEDRQLFSDRLHEINEKIAKSYT-ADTVDEAVEAAKDIGYPLMIRS-AFALGGLGSGMCYDEDHLRDMANKALSTspQILVEKSMKGWKEVEYEVVRDAYDNCVTVCNMENFDPLGIHTgdsMVMAPSqTLSDEEYHMLRNTAIRTVRHLGIIGECNI 744
                  55667888888899999999999997.4566666667789*****9975.6789999999*******99998877666689************************99999999999999974333778887556666677788888888888888886655 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 2.3e-06
    TIGR01161   88 pspealallqdkltqkqllqklglavpeflvelkeeeelekaleelglpvvlKarkggYDGrGqfvikseeeleqalka....lgdkelivEefvkfekElsvivaRskeGevafyPvvenlqkdgi....lrlvvapaalpeklqkkaeelarklveeldlvGvlavElFlledgelLvNElApRvHNsGHytldacetSQFeqhlraildlplgs 296 
                    s++++  ++d+ +  +++++ g++ p++l  l+++ +  ++++++g+pv+++ +     G    v  ++e+l+ +l++     +d+++++ +f++  +E+   ++  k+Ge+++  + e +++ g+     +lv+ p +l + +++++++ a+k+v++l++ G + +  F+ + ++++  E   R   s  +  +   +   e+  ra++d ++++
  MMETSP1061-20121228|10130_1 1120 TSAKMIDNAEDRNKFSAMIDEIGVQQPRWLE-LTDSGSAIDFANDVGYPVLVRPS-YVLSGAAMNVAWNDEQLKAFLNEaatvSKDHPVVISDFIEGATEIEFDGV-GKDGEIIAAAIHEHIENAGVhsgdATLVLPPQTLSDYTKHRVRDAAKKIVKRLNITGPVNIQ-FVAKGTDVMCIETNVRASRSFPFVSKTMGVDFIEAATRAMVDEDTSD 1332
                   567889999*********************5.7788888888899****999765.5578999999999999877665511115667****************999.689*************99993333467888999****************************7.56777788888888887777777777777777777777777666665 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   1.4e-08   3.2e-06     561     688 ..     300     426 ..     242     432 .. 0.81
   2 ?   -1.5   0.0      0.41        93     515     572 ..     498     558 ..     483     568 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.4e-08
    TIGR01815 561 dlvvlspGpGrpkdfdvketika......alardl.pvfGvclGlqglveafGGeldvlaepvhGkasrirvlepdvlfaglpeeltvGryhslfarsdrl.pkelkvtaesedgvimaiehrklpvaavqfhpes 688
                  d + ls GpG p+   +keti++      +   ++ p++G+clG q +  a GG+ ++l+    G++         vl ++ +e     + h ++ + + l p   ++ ++++dg   +i h   p  + qfhpe+
  MMETSP1061-20121228|10130_1 300 DGLFLSNGPGDPTM--CKETIEElekvisCPDDQVkPIYGICLGNQLMGLAAGGQAQKLPFGHRGQNQP-------VLNHQTGECYITPQNHGFVIDCSTLrPGWKTLFTNANDGSNEGIAHTSRPYFTAQFHPEA 426
                  66789*******85..55555431111114444444*************************99999764.......55556799999999******9999934455678999**********************97 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.41
    TIGR01815 515 eGkrillvdhedsfvhtlanylrqtGasvt...tlrhsvaeelldeerpdlvvlspGpGrp 572
                  eGk+++l++ + + v t  +   +  a  t    +   + ee++++e+pd +v+s G  + 
  MMETSP1061-20121228|10130_1 498 EGKEVVLMNPNIASVQTNMDSKSEFKADHTfflPVTPEFVEEVIKKEKPDGIVVSMGGQTA 558
                  6777777777777777777665555555541114667899***************997665 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0023      0.51      83     206 ..     570     687 ..     490     731 .. 0.81
   2 !   15.8   0.0   4.6e-06     0.001      40     197 ..    1066    1219 ..    1045    1239 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0023
    TIGR00877  83 aleeaGikvfGpkkeAaklEasKafakdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefleG.eEvsllalvdgkt 206
                   +e+ G++v+G   +  +   +++   d l++++ ++a+  + + ++ea e  ++ g p ++++     +G g  +++de+   ++++++l++        ++++E+ ++G +Ev + ++ d ++
  MMETSP1061-20121228|10130_1 570 IFEKYGVEVLGTPIDVVINTEDRQLFSDRLHEINEKIAKSYTADTVDEAVEAAKDIGYP-LMIRSAFALGGLGSGMCYDEDHLRDMANKALSTS------PQILVEKSMKGwKEVEYEVVRDAYD 687
                  58999999999888887776677777788999999***********************9.55666556699**********9999999999995......89*********66998888888654 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 4.6e-06
    TIGR00877   40 lekekeveievtdleevvefakkkkidlavigpEapLvlGlvdaleeaGikvfGpkkeAak.lEasKafakdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkfgeagekvviEefleGe.Evs 197 
                    +++ ++  e+ + e+v ++ +  +++ +v++    + +Gl+  l +aG+k +G +++     E   +f  ++++++g++++++ ++t+   a ++ +++g p ++v+++ + +G    v+ + e+ ++ ++e+ +        ++vvi +f+eG  E+ 
  MMETSP1061-20121228|10130_1 1066 YDECDRMYFEELNRERVLDIYERDNMNGVVVSVGGQIPNGLAIPLADAGVKLLGTSAKMIDnAEDRNKF-SAMIDEIGVQQPRWLELTDSGSAIDFANDVGYP-VLVRPSYVLSGAAMNVAWNDEQLKAFLNEAATV----SKDHPVVISDFIEGAtEIE 1219
                   55666777777788999999999999999999999*******************998876515555555.589*****************************9.9****************9988877777776555....4678*********953555 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0017      0.38     230     297 ..     608     674 ..     585     690 .. 0.79
   2 !   13.5   0.0   1.3e-05    0.0029     203     297 ..    1120    1215 ..    1117    1245 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0017
    TIGR02068 230 eGtvvqsaeeaeeaaeelGyPvvikPl..dGnhGrGvtiniesreeiesayeaakeesseviverfikGr 297
                  +  ++++++ea+eaa+++GyP++i+     G  G G+  +    +++    + a  +s +++ve+ +kG 
  MMETSP1061-20121228|10130_1 608 KSYTADTVDEAVEAAKDIGYPLMIRSAfaLGGLGSGMCYD---EDHLRDMANKALSTSPQILVEKSMKGW 674
                  56678999****************9862257777887766...4556666678899999******99994 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.3e-05
    TIGR02068  203 tsiiaveiasDkeltkklLkaaGvPvPeGtvvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesay.eaakees..seviverfikGr 297 
                   ts+  ++ a+D++    ++++ Gv  P+   +     a++ a+++GyPv ++P       G ++n+   +e  +a+ + a+ +s  + v++  fi+G 
  MMETSP1061-20121228|10130_1 1120 TSAKMIDNAEDRNKFSAMIDEIGVQQPRWLELTDSGSAIDFANDVGYPVLVRPSYVLS--GAAMNVAWNDEQLKAFlNEAATVSkdHPVVISDFIEGA 1215
                   5666678899*******************************************98766..56778888888888884567777754679999999996 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00024     0.055       4      87 ..     262     348 ..     259     369 .. 0.72
   2 ?   -0.1   0.0      0.66   1.5e+02     173     184 ..     416     427 ..     393     436 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00024
    TIGR01855   4 idygvgNlksvkkalervgaesevvkds....kelekadklvlP.GVGafkeamkklrelelellaekvvkkkkpvlgiClGmQllfek 87 
                  i +++g  +++ + l + g+e +vv  +    +e++ +d l+l  G G  + + ++++ele +++ +    + kp+ giClG Ql+   
  MMETSP1061-20121228|10130_1 262 IAVDCGMKNNIIRHLVKRGVELTVVPWDypfaSEMHLYDGLFLSnGPGDPTMCKETIEELE-KVI-SCPDDQVKPIYGICLGNQLMGLA 348
                  5555555556666666666666655432223267788899988448999999999999988.555.67778889***********9765 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.66
    TIGR01855 173 nivgvQFHPEkS 184
                   ++++QFHPE  
  MMETSP1061-20121228|10130_1 416 PYFTAQFHPEAA 427
                  568899999964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.07u 0.17s 00:00:01.24 Elapsed: 00:00:01.02
# Mc/sec: 2007.01
//
Query:       MMETSP1061-20121228|10157_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 280.48
//
Query:       MMETSP1061-20121228|10179_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-92  306.7   2.7    3.2e-92  306.4   1.9    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.5e-76  255.1   3.3    1.8e-76  254.8   2.3    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.5e-57  192.5   1.9    1.9e-57  192.2   1.3    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    3.4e-55  185.0   4.1    4.6e-55  184.6   2.8    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    7.9e-53  177.1   1.8    6.4e-52  174.2   1.2    1.9  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.2e-52  175.8   5.4    7.1e-52  174.2   3.7    1.7  1  TIGR02415 23BDH: acetoin reductases
    1.3e-49  166.7   4.8    1.6e-49  166.4   3.3    1.1  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    3.2e-47  159.0   0.9    5.3e-47  158.3   0.6    1.3  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    3.5e-29   99.5   4.6    5.1e-28   95.6   3.2    2.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
      1e-25   88.2   0.2    1.4e-24   84.4   0.1    2.0  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    1.9e-20   71.1   3.3    4.4e-20   69.8   2.3    1.5  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    9.2e-11   39.4   0.0    1.3e-10   39.0   0.0    1.1  1  TIGR01500 sepiapter_red: sepiapterin reductase
      1e-06   23.5   0.6    1.7e-06   22.9   0.2    1.3  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
  ------ inclusion threshold ------
      0.017   12.4   0.1      0.024   12.0   0.1    1.3  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
      0.018   12.3   0.1       0.03   11.5   0.1    1.3  1  TIGR03620 F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family
      0.018   11.7   0.1       0.03   11.0   0.0    1.4  1  TIGR01179 galE: UDP-glucose 4-epimerase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.4   1.9   1.2e-94   3.2e-92       2     239 .]      54     294 ..      53     294 .. 0.97

  Alignments for each domain:
  == domain 1    score: 306.4 bits;  conditional E-value: 1.2e-94
    TIGR01830   2 lvtGasrgiGkaiakklakegakvviters..keekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkrlgkpeevaaavafLasdea.syitGqvlkvdGGlv 239
                  lvtG+srg+Gk+ia +l ++g+kvvi+ +s  ++e+ae++++e+keag++a+a+++d sd +++kel+++ +e++g++d+l+nnAGitrD+l++rmk ++w++vi++nL+gvf +t+a  k   kkr+Griinissvvg  Gn+gqanYaa+K+G+i+lt s akE+a+r+i+vn+++PGfietdm +kl+e+  +ki eqiplkrlgkp+e+a ++ fLa d+a +yitG++++vdGG++
  MMETSP1061-20121228|10179_1  54 LVTGSSRGLGKSIAINLGNAGQKVVINFVSdgSKEAAEATVAEIKEAGGDAVAIQADSSDPDAIKELFAKSVEAFGTVDVLINNAGITRDGLVMRMKPKQWQDVIDTNLSGVFYCTQAFFKIAAKKRTGRIINISSVVGQFGNPGQANYAAAKGGVIALTMSNAKEFAARGIKVNCICPGFIETDMVDKLDESYLEKISEQIPLKRLGKPSEIAGMCNFLALDDAvEYITGHTFNVDGGMA 294
                  8************************997652256789999*************************************************************************************************************************************************************************************976648************95 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.8   2.3     7e-79   1.8e-76       1     240 [.      51     293 ..      51     295 .. 0.96

  Alignments for each domain:
  == domain 1    score: 254.8 bits;  conditional E-value: 7e-79
    TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvap..neerakewlqekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrlgkpeeiaaavaflaseea.gyvtGatlsvnGGl 240
                  +v lvtG+++G+G++i+ +l ++G kvv n+++   +e+a++   e +  g d + ++ad s+ ++ k+ +ak  ++ G+vdvl+nnaGitrd ++ +m+ +qW++vidtnl++vf  t+  ++  +++  Griinissv G+ G  Gqany+aak G+i +t++ a+e a++g+ vn i+PG+i+t+mv ++ e  l+ki +qiP+krlgkp eia ++ fla ++a  y+tG+t++v+GG+
  MMETSP1061-20121228|10179_1  51 KVILVTGSSRGLGKSIAINLGNAGQKVVINFVSdgSKEAAEATVAEIKEAGGDAVAIQADSSDPDAIKELFAKSVEAFGTVDVLINNAGITRDGLVMRMKPKQWQDVIDTNLSGVFYCTQAFFKIAAKKRTGRIINISSVVGQFGNPGQANYAAAKGGVIALTMSNAKEFAARGIKVNCICPGFIETDMVDKLDESYLEKISEQIPLKRLGKPSEIAGMCNFLALDDAvEYITGHTFNVDGGM 293
                  799****************************9855677888888888888899999************************************************************************************************************************************************************************988737************7 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.2   1.3   7.5e-60   1.9e-57       1     238 [.      53     293 ..      53     294 .. 0.93

  Alignments for each domain:
  == domain 1    score: 192.2 bits;  conditional E-value: 7.5e-60
    TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsd..radaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdlkeal.klvpmkrvgkaeevaalaaflmsdda.ayvtrqvisvnggm 238
                  +lvtg+srg+g++ia++l  +g ++ + + sd  + +ae++va+i+  gg+a  ++ d +d  a++e++ + +++ g+   ++ nagi+rd     +  ++w+ vi+tnl g +   +     +   ++ grii ++sv g  gn gq ny+aak g+i  t + a e+a r i vnci pg+i+t+mv++ +++  e++ + +p+kr+gk++e+a++++fl  dda  y+t    +v+ggm
  MMETSP1061-20121228|10179_1  53 ILVTGSSRGLGKSIAINLGNAGQKVVINFVSDgsKEAAEATVAEIKEAGGDAVAIQADSSDPDAIKELFAKSVEAFGTVDVLINNAGITRDGLVMRMKPKQWQDVIDTNLSGVFYCTQAFF-KIAAKKRTGRIINISSVVGQFGNPGQANYAAAKGGVIALTMSNAKEFAARGIKVNCICPGFIETDMVDKLDESYLEKIsEQIPLKRLGKPSEIAGMCNFLALDDAvEYITGHTFNVDGGM 293
                  69**************************9998335589**************************************************************************999888765.566677899************************************************************987766665168*******************8777637************9 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.6   2.8   1.8e-57   4.6e-55       5     245 ..      50     293 ..      47     295 .. 0.93

  Alignments for each domain:
  == domain 1    score: 184.6 bits;  conditional E-value: 1.8e-57
    TIGR01832   5 GkvalvtGantGlGqgiavglaeaGadivgv....g.iselsetqekvealGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavfla.ssasdyvnGailavdGGw 245
                   kv+lvtG+++GlG++ia+ l +aG ++v      g + +++ t +++++ G  + +++ad +d++a+k+l ++ ve++g +d+l+nnaGi r    + +  k+w+dv+++nl  vf+ +qa+ k + k+ r+g+iini+s++   G    + y+a+k +v+ lt + a+e+a++gi+vn i PG++et+  ++l  de+  ++i e+iP  r G+p+++ag   fla  +a +y++G++++vdGG 
  MMETSP1061-20121228|10179_1  50 AKVILVTGSSRGLGKSIAINLGNAGQKVVINfvsdGsKEAAEATVAEIKEAGGDAVAIQADSSDPDAIKELFAKSVEAFGTVDVLINNAGITRDGLVMRMKPKQWQDVIDTNLSGVFYCTQAFFKIAAKK-RTGRIINISSVVGQFGNPGQANYAAAKGGVIALTMSNAKEFAARGIKVNCICPGFIETDMVDKL--DESYLEKISEQIPLKRLGKPSEIAGMCNFLAlDDAVEYITGHTFNVDGGM 293
                  699***********************998651111313345568999****************************************************************************9987776.59***********99**********************************************988..99999*************************945799************95 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   1.2   2.5e-54   6.4e-52       2     252 ..      51     293 ..      50     295 .. 0.93

  Alignments for each domain:
  == domain 1    score: 174.2 bits;  conditional E-value: 2.5e-54
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle...eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaq.itGqalsldgGw 252
                  kv+lvtG++ G+g+ ia +l +aG kvv+n ++   +eaaea+ +e++eagg+++a++ad ++ ++i++l ++ +++fg++d+L+nnAGi     +    +++++ +i+ nl++ f  ++a ++i  k+  Griini+sv g  + + ++ Y aaK g++ lt + A+E A+ gi++n+icPg+++t +v+k   d++  ++i           ++ p kr+ ++ e+a++  fla d+a + itG ++++dgG 
  MMETSP1061-20121228|10179_1  51 KVILVTGSSRGLGKSIAINLGNAGQKVVINFVSdgsKEAAEATVAEIKEAGGDAVAIQADSSDPDAIKELFAKSVEAFGTVDVLINNAGITRDGLVMRMKPKQWQDVIDTNLSGVFYCTQAFFKIAAKKRTGRIINISSVVGQFGNPGQANYAAAKGGVIALTMSNAKEFAARGIKVNCICPGFIETDMVDKL--DESYLEKI----------SEQIPLKRLGKPSEIAGMCNFLALDDAVEyITGHTFNVDGGM 293
                  89**************************987765558899999999************************************************************************************************************************************************983..44444444..........456799*****************98886449**********6 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.2   3.7   2.8e-54   7.1e-52       1     252 [.      51     294 ..      51     295 .. 0.94

  Alignments for each domain:
  == domain 1    score: 174.2 bits;  conditional E-value: 2.8e-54
    TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadln...eetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflaseds.dyitGqsilvdGGlv 252
                  kv lvtG+++G+Gk+ia  L + G +v++  +    +e+a +t+ e+ke+g++ava+++d sd ++++e+  ++ve +G++dvl+nnaG++    ++ +++++ + + + n+ gv++  qa   k   +k  G+iin +s+ g+ g+p ++ y+++k  v +lt + ake+a++gi vn+ +PG ++t+m +++de             le++s++i l r  +P+++a++  fla +d+ +yitG +  vdGG+ 
  MMETSP1061-20121228|10179_1  51 KVILVTGSSRGLGKSIAINLGNAGQKVVINFVSdgsKEAAEATVAEIKEAGGDAVAIQADSSDPDAIKELFAKSVEAFGTVDVLINNAGITRDGLVMRMKPKQWQDVIDTNLSGVFYCTQAFF-KIAAKKRTGRIINISSVVGQFGNPGQANYAAAKGGVIALTMSNAKEFAARGIKVNCICPGFIETDMVDKLDESY-----------LEKISEQIPLKRLGKPSEIAGMCNFLALDDAvEYITGHTFNVDGGMA 294
                  799************************986444333999*********************************************************************************875.56777889*************************************************************99865...........567899*********************987659************95 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.4   3.3   6.2e-52   1.6e-49       3     249 ..      50     294 ..      48     295 .. 0.95

  Alignments for each domain:
  == domain 1    score: 166.4 bits;  conditional E-value: 6.2e-52
    TIGR03206   3 dkvaivtgggggiggaicrrfaeegakva...vldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasdda.afitgqvlsvsgglt 249
                   kv++vtg + g+g +i   +++ g kv    v d ++eaae   a+i+e+gg+a a+++d +d ++++   a + ea+g vdvl+nnag    +  ++ ++ +w+ +i  nl g +y   a  k   ++++gri+ni+s  ++ g  g+a yaa kgg++a++ + a+e+a +gi vn +cpg  +t +++ +       e  +e ++  ipl rlgkp ++ag   fla dda  +itg  + v gg++
  MMETSP1061-20121228|10179_1  50 AKVILVTGSSRGLGKSIAINLGNAGQKVVinfVSDGSKEAAEATVAEIKEAGGDAVAIQADSSDPDAIKELFAKSVEAFGTVDVLINNAGITRDGLVMRMKPKQWQDVIDTNLSGVFYCTQAFFKIAAKKRTGRIINISSVVGQFGNPGQANYAAAKGGVIALTMSNAKEFAARGIKVNCICPGFIETDMVDKLD------ESYLEKISEQIPLKRLGKPSEIAGMCNFLALDDAvEYITGHTFNVDGGMA 294
                  5999***********************9733356889*******************************************************************************************************************************************************9998764......5567778889***********************946************86 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.3   0.6   2.1e-49   5.3e-47       2     264 ..      49     293 ..      48     294 .. 0.92

  Alignments for each domain:
  == domain 1    score: 158.3 bits;  conditional E-value: 2.1e-49
    TIGR03971   2 eGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdes.ryitGaqlavdaGa 264
                  + kv l+tG++rG G++ a++l + G  ++    +         + +++e  + t++ ++++G  ++a +ad  + +++++  +++ve fG +dv+++naG+   g +  ++++qW++v+d+nl Gv+ + +a   ++  +k  G ii +ssv g  + pg+a yaaak G+++lt + a+e a  gi+vn i P  ++t m++           e+++++  ++ p++ l +p ++a++  +la d++ +yitG+  +vd G+
  MMETSP1061-20121228|10179_1  49 DAKVILVTGSSRGLGKSIAINLGNAGQKVVIN-FV---------SDGSKEAAEATVAEIKEAGGDAVAIQADSSDPDAIKELFAKSVEAFGTVDVLINNAGITRDGLVMRMKPKQWQDVIDTNLSGVFYCTQAFF-KIAAKKRTGRIINISSVVGQFGNPGQANYAAAKGGVIALTMSNAKEFAARGIKVNCICPGFIETDMVD--------KLDESYLEKISEQIPLKRLGKPSEIAGMCNFLALDDAvEYITGHTFNVDGGM 293
                  579***********************988642.22.........3457888899****************************************************************************99987.56667779************************************************************........33566777777888999999*************988748***********97 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   3.2     2e-30   5.1e-28     414     597 ..      50     233 ..      44     296 .. 0.87

  Alignments for each domain:
  == domain 1    score: 95.6 bits;  conditional E-value: 2e-30
    TIGR02632 414 rrvalvtGgasGiGrevarrlvdeGahvv...ladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPd 597
                   +v+lvtG++ G+G+ +a++l + G  vv   + d  +eaaea+ ae+++    + ava+++d  d +a+k+ fa+ + a+G vd+++nnaGi+    +   + ++W+  +d +  G f  ++  +++  +++  g ++ i+s+ + + ++++  y+aak   + l    a e a  gi+vn + P 
  MMETSP1061-20121228|10179_1  50 AKVILVTGSSRGLGKSIAINLGNAGQKVVinfVSDGSKEAAEATVAEIKEA--GGDAVAIQADSSDPDAIKELFAKSVEAFGTVDVLINNAGITRDGLVMRMKPKQWQDVIDTNLSGVFYCTQAFFKI-AAKKRTGRIINISSVVGQFGNPGQANYAAAKGGVIALTMSNAKEFAARGIKVNCICPG 233
                  59**************************9444479999**********954..35689***************************************99999*****************987655555.55666789***********************************************995 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.4   0.1   5.5e-27   1.4e-24       2     263 ..      51     294 ..      50     296 .. 0.81

  Alignments for each domain:
  == domain 1    score: 84.4 bits;  conditional E-value: 5.5e-27
    TIGR02685   2 paalvtGaakriGrsiavklhqeGyrvvlhyrr..saeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnasafyptpllrgdaeegaaekkslevqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdampeevkeey....rrkvplgqreasaeqiadvviflvskka.kyitGtiikvdGGls 263
                   + lvtG+++ +G+sia++l + G +vv+ +    s+eaa++ +ae+  e  + av ++ad s     +++ +e+   +  afG  dvl+nna       ++r          k+   q  +++ +n    ++ ++af +  +        ++  i+n+   + +   +g + y+ ak  +  lt s a e+a+++i+vn+++pG+  + ++m ++  e y      ++pl +      +ia +  fl  ++a +yitG +  vdGG++
  MMETSP1061-20121228|10179_1  51 KVILVTGSSRGLGKSIAINLGNAGQKVVINFVSdgSKEAAEATVAEIK-EAGGDAVAIQADSSD----PDAIKELFAKSVEAFGTVDVLINNAGITRDGLVMR---------MKP--KQWQDVIDTNLSGVFYCTQAFFKIAAK------KRTGRIINISSVVGQFGNPGQANYAAAKGGVIALTMSNAKEFAARGIKVNCICPGF--IETDMVDKLDESYlekiSEQIPLKRL-GKPSEIAGMCNFLALDDAvEYITGHTFNVDGGMA 294
                  5789**************************964348999******996.56789*******776....6778999999***************8654433333.........232..356788999999999******988733......334468999999999999*************************************7..45555555555551000566788765.66789********9888758************97 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.8   2.3   1.7e-22   4.4e-20       5     257 ..      50     295 ..      46     297 .] 0.83

  Alignments for each domain:
  == domain 1    score: 69.8 bits;  conditional E-value: 1.7e-22
    TIGR03325   5 devvlvtggasglgralvdrfvaegarva...vldksa....agleeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsn.agfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrglksldladksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavlnydgglgv 257
                   +v+lvtg + glg+++       g +v    v d s+    a + e+++a gd+ v+++ d    d  ke  a+ veafg +d+li+nagi      +   p     + +++v + n+ g +++ +a +    + r + i+ +s   g + n g a y+aak  v+ l    a e+a + ++vn + pg + td+       l++       l++ + + +p+ r+ +  e +g   f+a       +tg  +n dgg+ +
  MMETSP1061-20121228|10179_1  50 AKVILVTGSSRGLGKSIAINLGNAGQKVVinfVSDGSKeaaeATVAEIKEAGGDA-VAIQADSSDPDAIKELFAKSVEAFGTVDVLINNAGITRDGLVMRMKP-----KQWQDVIDTNLSGVFYCTQAFFKIAAKKRTGRIINISSvVGQFGNPGQANYAAAKGGVIALTMSNAKEFAARgIKVNCICPGFIETDMVDK----LDES-----YLEK-ISEQIPLKRLGKPSEIAGMCNFLALDDAVEYITGHTFNVDGGMAI 295
                  589***************999999*999733345665411114566777766665.79**********************************87665555445.....4688999***************999999988888876527*****************************9866*************98543....2233.....3433.34557999999*************9999999************86 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   4.9e-13   1.3e-10       2     207 ..      52     246 ..      51     261 .. 0.86

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 4.9e-13
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeie.aevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgd.vskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapGvlDtdmqsqvree 207
                  ++lvtG+srG+G+++a +l +  +   +   ++  ++ea   + aei+ a  +a  ++  s d +a+k  e++ k++e+ +  +     +linnaG   d +  r+      k+ q   d+n+  +   t  ++k     +     ++n+ss+      ++ a Y a+k     +    a e     +kv    pG ++tdm  +  e 
  MMETSP1061-20121228|10179_1  52 VILVTGSSRGLGKSIAINLGNAGQKVVIN-FVSDGSKEAAEATVAEIKeAGGDAVAIQADSSDPDAIK--ELFAKSVEAFGTVD-----VLINNAGITRDgLVMRM----KPKQWQDVIDTNLSGVFYCTQAFFKIAA--KKRTGRIINISSVVGQFGNPGQANYAAAKGGVIALTMSNAKEFAaRGIKVNCICPGFIETDMVDKLDES 246
                  789****************9944333333.44667899999******9899999**************..99******999876.....89*****8877333344....479**************99999999877..4556679***********************99999999999999999***************9877665 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.2   6.4e-09   1.7e-06    2079    2193 ..      86     206 ..      72     223 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 6.4e-09
    TIGR02813 2079 sleia.qalaaikavGasaeylsvdvsdsasvaatvap.lnkllditGiihGaGvladkfiedktleelnavygtkvdGl....esllaalnaekvkllalfssaaGfyGntGqsdyaisn 2193
                   s+e a  ++a ik +G++a  + +d sd++++ +  a+ + +   +  +i  aG+  d  +     ++++ v  t ++G+    +++++    ++   ++  ss  G +Gn+Gq++ya + 
  MMETSP1061-20121228|10179_1   86 SKEAAeATVAEIKEAGGDAVAIQADSSDPDAIKELFAKsVEAFGTVDVLINNAGITRDGLVMRMKPKQWQDVIDTNLSGVfyctQAFFKIAAKKRTGRIINISSVVGQFGNPGQANYAAAK 206 
                   45555156899*********************998876255666999********************************8333345566667778889*******************9875 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   9.2e-05     0.024       5     146 ..      52     192 ..      48     242 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 9.2e-05
    TIGR01289   5 tviitgassglglaaakalvekgkwhvvmacrdlek..aekaakslglpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvta 146
                   +++tg+s glg   a  l + g+  v+    d  k  ae +  ++  + ++   ++ d +  d+++++ ++  e+  ++d+l+ na +    l   ++ +++++  + tn  g f  ++ +++   +++++  r+i + sv +
  MMETSP1061-20121228|10179_1  52 VILVTGSSRGLGKSIAINLGNAGQKVVINFVSDGSKeaAEATVAEIKEAGGDAVAIQADSSDPDAIKELFAKSVEAFGTVDVLINNAGITRDGLVM-RMKPKQWQDVIDTNLSGVFYCTQAFFKI--AAKKRTGRIINISSVVG 192
                  5789*******************99999888887772245555566666677888999**********99999999999********998776654.5677888888899988888888877653..45566677777777765 PP

>> TIGR03620  F420_MSMEG_4141: probable F420-dependent oxidoreductase, MSMEG_4141 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   0.00012      0.03     227     268 ..      76     117 ..      68     126 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 0.00012
    TIGR03620 227 rLvdalvawGdadtvaarvkehleAGAdhVavqvltedeeel 268
                  + v + v+ G++++  a v+e +eAG d Va+q  ++d++++
  MMETSP1061-20121228|10179_1  76 KVVINFVSDGSKEAAEATVAEIKEAGGDAVAIQADSSDPDAI 117
                  566778999************************988876655 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00012      0.03       2      69 ..      53     124 ..      52     178 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00012
    TIGR01179   2 iLvtGgaGyiGshvvrqllekgkevvv...lDnlskgskealkalekit.evklvegdladkekleavleee 69 
                  iLvtG++  +G +++ +l ++g++vv+    D   ++ + ++ ++++   + + +++d +d  +++++++++
  MMETSP1061-20121228|10179_1  53 ILVTGSSRGLGKSIAINLGNAGQKVVInfvSDGSKEAAEATVAEIKEAGgDAVAIQADSSDPDAIKELFAKS 124
                  9**********************9886221344444555556666666689999***************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.39
# Mc/sec: 1005.15
//
Query:       MMETSP1061-20121228|10182_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-135  447.9   1.1   5.5e-135  447.7   0.8    1.0  1  TIGR00033 aroC: chorismate synthase


Domain annotation for each model (and alignments):
>> TIGR00033  aroC: chorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  447.7   0.8  1.3e-138  5.5e-135       1     349 [.      13     366 ..      13     368 .. 0.98

  Alignments for each domain:
  == domain 1    score: 447.7 bits;  conditional E-value: 1.3e-138
    TIGR00033   1 lrlttfGeSHgkalgaiidGlPaglelteediqkelkrRrpgqsrltrmrkEeDeveilsGvf.eGkTtGaPiallikNkdvrskdyed..ikelpRPgHadytylkKYgikdregggrsSaReTaarvaaGavakklLketagieivayvvklgeveleeesakeiskerldkspvrcpdaeaekemeeeidkakkdgdsvGgvvevvvsnvpvglGeplfdkldaelasallsinAvKgveiGdGFeaasvrGseanDelvle..ddkirrktnnsGGieGGitnGedirvriavKpiptikkplktvdletkekakatkgRhDpcvvpravpvvEamvalvladallekra 349
                  +r+ t+GeSHg  +g+++dG+P+ +++t ed+qk+l+rRrpgqsr t++r+E+D+vei+sG+  e  T G+Pia+l++Nkd+rs+dy +  ++  +RP+Had ty  KYg+++  gggrsSaReT++rvaaGava+k Lk  ++ie++ayv+k+ ++e+e+   ++ + e +d++ vrcpd+  +++m + id+++k+g+s+Ggvv++v++nvp+glG+p+fdkl+a la+a +si+A+Kg+e GdGFe +   G ++nDe++++  ++  r+ktn+sGGi+GGi+nGe+i+vr+a+Kp++ti++++ tv+ ++ke   + kgRhDpcv+pravp+vEamval+l+dal+ ++a
  MMETSP1061-20121228|10182_1  13 FRISTWGESHGGGVGVTLDGCPPRIHVTREDVQKDLDRRRPGQSRITTPRNEADAVEIMSGLNpEDITLGTPIAMLVRNKDQRSQDYLEndMNVAYRPSHADATYDSKYGVRAIAGGGRSSARETIGRVAAGAVARKILKMYNDIEVLAYVSKVQDIEAENVDHDTFTMEDVDSNMVRCPDEASAEKMLARIDEIRKAGNSIGGVVTCVARNVPAGLGSPVFDKLEADLAKACMSIPAAKGFESGDGFEGTLLSGKDHNDEFYIDpeTGATRTKTNRSGGIQGGISNGENIVVRVAFKPTSTIGQAQSTVTRDGKEVELRGKGRHDPCVLPRAVPMVEAMVALTLTDALMMQKA 366
                  7999**********************************************************85789********************65449999**********************************************************************99*************************************************************************************************98678899*****************************************************************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 2009.17
//
Query:       MMETSP1061-20121228|10222_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00039   17.2   0.0      0.056   10.1   0.0    2.1  2  TIGR02730 carot_isom: carotene isomerase
    0.00079   16.3   0.0     0.0012   15.7   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase


Domain annotation for each model (and alignments):
>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   2.7e-05     0.056       1      43 [.      23      65 ..      23     115 .. 0.79
   2 !    5.1   0.0   0.00085       1.7     222     277 ..     242     299 ..     217     312 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.7e-05
    TIGR02730  1 ydaivigsgigglvtatqlaakgakvlvlekylipggsagyfe 43
                 ydaiv+g+g+   v +  l++kg +vl +++    gg +   +
  MMETSP1061-20121228|10222_1 23 YDAIVLGTGLKECVISGLLSVKGKRVLQVDRNGYYGGDGASLN 65
                 9****************************99888888766554 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00085
    TIGR02730 222 nypkggvgeiaeklvkglekaggkirykarvtkiile.ndkavgvkla.dgekirakr 277
                   yp+ g+g + e + +    +gg    +  v +i+ +  +ka+g+  + dg+k+ ak 
  MMETSP1061-20121228|10222_1 242 IYPVYGLGGLPEGFSRICAIHGGTFMLNRDVDEILFDdSGKAIGITSSeDGKKMMAKA 299
                  59********************************976268****98764799999985 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   5.8e-07    0.0012       2      62 ..      23      81 ..      22      98 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 5.8e-07
    TIGR00031  2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdekgllvhkyGphifhtd 62
                 +d i++G+Gl   v++  l+ ++krvl v++    GG+       +  l+ k+G+    t+
  MMETSP1061-20121228|10222_1 23 YDAIVLGTGLKECVISGLLSVKGKRVLQVDRNGYYGGDGASLNLTN--LFEKFGAGAAPTN 81
                 9************************************987666666..7777777665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2273.15
//
Query:       MMETSP1061-20121228|10233_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1765.35
//
Query:       MMETSP1061-20121228|10244_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 868.35
//
Query:       MMETSP1061-20121228|10248_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|10257_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 384.49
//
Query:       MMETSP1061-20121228|10243_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-35  117.8   0.0    1.4e-11   42.3   0.0    4.3  3  TIGR02246 TIGR02246: conserved hypothetical protein
  ------ inclusion threshold ------
      0.028   12.9   3.5        5.8    5.4   0.1    3.5  3  TIGR03769 P_ac_wall_RPT: actinobacterial surface-anchored protein domain


Domain annotation for each model (and alignments):
>> TIGR02246  TIGR02246: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   9.9e-13     2e-09       3     127 ..      73     193 ..      72     194 .. 0.89
   2 !   42.3   0.0   6.8e-15   1.4e-11       3     127 ..     204     322 ..     203     323 .. 0.86
   3 !   33.3   0.0   4.2e-12   8.6e-09       3     127 ..     334     454 ..     333     455 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 9.9e-13
    TIGR02246   3 eeairaLvarleaAwaagDaeafAnlFteD..gvfvtvpGq.klkGreaIaaaleaflekpvkgtkvevdvievrvlgpdlaivhaeatitatgkkraaaraavrltlvavkadgrWllaadqntpvr 127
                  ++++raL+  +++A+a+gD   +A+ ++    +v+++++++ ++   + I+ +++afl k ++g   e+   ++r +g+  a ++ ++ +t+   + +  ++++r+++v+v + g+W + ++++++++
  MMETSP1061-20121228|10243_1  73 KDEVRALFSLWNNALATGDSRLVASRYATKsgAVLLPTVSDtPRTDFDSIKDYFDAFLLKEPQG---EILSGDIR-IGDGWAQDAGIYEFTM---GATGDKVKARYSYVYVYEKGQWKISHHHSSVMP 193
                  589************************96433899999999888889****************6...66667776.7******999999986...567788999*********************997 PP

  == domain 2    score: 42.3 bits;  conditional E-value: 6.8e-15
    TIGR02246   3 eeairaLvarleaAwaagDaeafAnlFteDgvfvtvpGq.klkGreaIaaaleaflekpvkgtkvevdvievrvlgpdlaivhaeatitatgkkraaaraavrltlvavkadgrWllaadqntpvr 127
                  +e++++L+  +++A+a+ D + +A+ +++ gv+++++++ ++    +I  +++afl+k+++g ++        ++g +   +  ++ +t+   + +  ++++r+++v+v +dg+W +a+++++ ++
  MMETSP1061-20121228|10243_1 204 KEEVQNLFHLWNDALATLDSSLVASRYAKNGVLLPTVSDvPRDNAAKITDYFDAFLQKKPQG-EIL---ESFVTIGTNWCQDVGIYEFTL---GATGDKVKARYSFVYVYEDGQWKIAHHHSSQMP 322
                  689************************************77777889**************6.333...333356777777777777766...56778899*********************9987 PP

  == domain 3    score: 33.3 bits;  conditional E-value: 4.2e-12
    TIGR02246   3 eeairaLvarleaAwaagDaeafAnlFteDg..vfvtvpGq.klkGreaIaaaleaflekpvkgtkvevdvievrvlgpdlaivhaeatitatgkkraaaraavrltlvavkadgrWllaadqntpvr 127
                  e++++aL+ ++++A+a+ D++ +A+ +       +++++++ ++   + I+a+++ f +k+++g ++  ++++   +g + a++  ++ +t+   + +  ++++r+++v+  +dg+W +a+++++ ++
  MMETSP1061-20121228|10243_1 334 EAEVKALFYKWNDALATLDPDTVAKRYSSKTapCLLPTVSDvPRTDYDSIKAYFVDFTKKQPQG-EILESYVT---VGHNWAMDDGIYEFTM---GATGDKVKARYSFVYTFEDGEWKIAHHHSSQMP 454
                  689************************87652247778888678889****************6.55555554...5899999999999886...56778899*********************9987 PP

>> TIGR03769  P_ac_wall_RPT: actinobacterial surface-anchored protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1    0.0036       7.3      12      25 ..     153     166 ..     151     171 .. 0.85
   2 ?    0.8   0.0     0.081   1.7e+02      13      25 ..     283     295 ..     280     303 .. 0.86
   3 ?    5.4   0.1    0.0028       5.8      13      39 ..     415     438 ..     409     439 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0036
    TIGR03769  12 PGtYtltvratatl 25 
                  +G+Y++t+ at+++
  MMETSP1061-20121228|10243_1 153 AGIYEFTMGATGDK 166
                  8**********955 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.081
    TIGR03769  13 GtYtltvratatl 25 
                  G+Y++t  at+++
  MMETSP1061-20121228|10243_1 283 GIYEFTLGATGDK 295
                  9*********955 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0028
    TIGR03769  13 GtYtltvratatltdGkvssdpqtltf 39 
                  G+Y++t+ at+   d  ++  ++++tf
  MMETSP1061-20121228|10243_1 415 GIYEFTMGATG---DKVKARYSFVYTF 438
                  9**********...5556777777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1824.56
//
Query:       MMETSP1061-20121228|10264_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-08   29.5   1.4    0.00056   17.5   0.3    2.6  2  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   2.1e-05     0.086      14      25 ..      22      33 ..      21      34 .. 0.87
   2 !   17.5   0.3   1.4e-07   0.00056       1      25 [.      35      58 ..      35      59 .. 0.96

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.1e-05
    TIGR02167 14 SnfdTsnVTnMs 25
                  +++T++V +M 
  MMETSP1061-20121228|10264_1 22 GSWNTAKVYDME 33
                 69******9995 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 1.4e-07
    TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                 MF++ + +++ +l+ +d+s VTnM+
  MMETSP1061-20121228|10264_1 35 MFRNATIFNQ-PLDDWDVSLVTNMD 58
                 9*********.*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|10272_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|10277_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.64
# Mc/sec: 991.98
//
Query:       MMETSP1061-20121228|10285_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-65  214.9   0.3    7.3e-65  214.5   0.2    1.1  1  TIGR01999 iscU: FeS cluster assembly scaffold IscU
    3.8e-43  144.6   0.3      5e-43  144.2   0.2    1.1  1  TIGR03419 NifU_clost: FeS cluster assembly scaffold protein NifU
    1.9e-37  127.1   0.2    2.8e-37  126.5   0.1    1.1  1  TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU
    1.3e-15   55.5   0.2    4.5e-15   53.7   0.0    1.8  2  TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family
     0.0026   15.2   0.2     0.0058   14.1   0.0    1.7  2  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit


Domain annotation for each model (and alignments):
>> TIGR01999  iscU: FeS cluster assembly scaffold IscU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.5   0.2   8.9e-68   7.3e-65       1     124 []      50     173 ..      50     173 .. 0.99

  Alignments for each domain:
  == domain 1    score: 214.5 bits;  conditional E-value: 8.9e-68
    TIGR01999   1 ysekvldhyenprnvGsldkedknvGtglvGapacGdvlklqikvnddgiiedakfktfGcGsaiassslvtelikGksleeakkiknteiaeelslppvklhcsllaedaikaaikdykkkre 124
                  y+e++++hyenprnvGs+dk++++vGtglvGapacGdv+klqi+v+ddg i ++kfktfGcGsaia+ss++te++kGk ++ea ++kn++ia +l+lppvklhcs+laedaikaa+kd+k+k+e
  MMETSP1061-20121228|10285_1  50 YHENIVEHYENPRNVGSMDKNEESVGTGLVGAPACGDVMKLQIRVDDDGNIIESKFKTFGCGSAIAASSVATEWVKGKNVDEALAVKNSDIAAHLKLPPVKLHCSMLAEDAIKAAVKDWKTKQE 173
                  99************************************************************************************************************************95 PP

>> TIGR03419  NifU_clost: FeS cluster assembly scaffold protein NifU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.2   0.2     6e-46     5e-43       1     120 [.      50     172 ..      50     173 .. 0.94

  Alignments for each domain:
  == domain 1    score: 144.2 bits;  conditional E-value: 6e-46
    TIGR03419   1 ysekvldhftnprnvGeie...dadGvGevgnakcGdimkiylkvedd.iikdvkfktfGcgaaiasssmatelikGktleealeltnkavaealdGlppvklhcsvlaeeaikkaiedyrekk 120
                  y e +++h+ nprnvG+++   ++ G+G vg ++cGd+mk+ ++v+dd  i + kfktfGcg+aia+ss+ate +kGk+++eal + n+++a  l+ lppvklhcs+lae+aik+a++d+++k+
  MMETSP1061-20121228|10285_1  50 YHENIVEHYENPRNVGSMDkneESVGTGLVGAPACGDVMKLQIRVDDDgNIIESKFKTFGCGSAIAASSVATEWVKGKNVDEALAVKNSDIAAHLK-LPPVKLHCSMLAEDAIKAAVKDWKTKQ 172
                  8899************9962114569999*****************998999*****************************************997.************************998 PP

>> TIGR02000  NifU_proper: Fe-S cluster assembly protein NifU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.5   0.1   3.4e-40   2.8e-37       4     125 ..      50     172 ..      48     178 .. 0.94

  Alignments for each domain:
  == domain 1    score: 126.5 bits;  conditional E-value: 3.4e-40
    TIGR02000   4 ysdkvkehfynPknagvveeane...vGevGslscGdalrlmlkvdpesdkiedagfqtfGcgsaiasssaltelikGktldealkvsnkdiadyldGlPpekmhcsvmGqealeaaianyrGes 125
                  y + + eh+ nP+n g +++++e   +G vG+ +cGd ++l+++vd + ++  +++f+tfGcgsaia+ss  te +kGk +deal v n dia +l  lPp k+hcs++ ++a++aa+ +++ ++
  MMETSP1061-20121228|10285_1  50 YHENIVEHYENPRNVGSMDKNEEsvgTGLVGAPACGDVMKLQIRVDDDGNI-IESKFKTFGCGSAIAASSVATEWVKGKNVDEALAVKNSDIAAHLK-LPPVKLHCSMLAEDAIKAAVKDWKTKQ 172
                  99*******************99988899*****************88765.689*****************************************7.**********************99765 PP

>> TIGR01994  SUF_scaf_2: SUF system FeS assembly protein, NifU family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   5.5e-18   4.5e-15       5      87 ..      50     136 ..      46     145 .. 0.88
   2 ?   -0.3   0.0      0.26   2.2e+02     115     136 ..     144     165 ..     135     166 .. 0.79

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 5.5e-18
    TIGR01994   5 Yrevildhakkkrhrgkledaevq...eegkNpsCGDeitltvklegd.riediafegeGCsisqAsaslmteaikGktveealklv 87 
                  Y+e i++h++++r+ g ++++e       +  p CGD+++l++++++d  i + +f+  GC  + A++s+ te +kGk+v+eal++ 
  MMETSP1061-20121228|10285_1  50 YHENIVEHYENPRNVGSMDKNEESvgtGLVGAPACGDVMKLQIRVDDDgNIIESKFKTFGCGSAIAASSVATEWVKGKNVDEALAVK 136
                  99**************9988776522134579**************9999*********************************9876 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.26
    TIGR01994 115 vaklpaRikCalLaWkaleeal 136
                  ++  p++++C +La  a+++a+
  MMETSP1061-20121228|10285_1 144 LKLPPVKLHCSMLAEDAIKAAV 165
                  55568999******99999887 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     7e-06    0.0058     114     162 ..      93     141 ..      78     145 .. 0.89
   2 ?   -3.8   0.0       2.1   1.7e+03     156     166 ..     156     166 ..     153     169 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7e-06
    TIGR03634 114 slDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaik 162
                   +D  G+iie k+ + G Gs +a + + +e+ ++ +++ea  +    i 
  MMETSP1061-20121228|10285_1  93 RVDDDGNIIESKFKTFGCGSAIAASSVATEWVKGKNVDEALAVKNSDIA 141
                  68999***********************************988766665 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 2.1
    TIGR03634 156 lavkaiksaie 166
                  la  aik+a++
  MMETSP1061-20121228|10285_1 156 LAEDAIKAAVK 166
                  66777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1032.96
//
Query:       MMETSP1061-20121228|10282_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.3   0.1      0.018   11.8   0.1    1.2  1  TIGR03246 arg_catab_astC: succinylornithine transaminase family


Domain annotation for each model (and alignments):
>> TIGR03246  arg_catab_astC: succinylornithine transaminase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   4.5e-06     0.018     296     367 ..      52     134 ..      47     153 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.5e-06
    TIGR03246 296 ntaelleGvkqrhelf..vdelekinarykvfseirGkGlliGavlteeya.....G....kakdlvnaaaeeGvlvliaGpd 367
                  n+++ll+G ++ ++++  +++ + +n++y+v +++r   ll  +v +  ++     G       +l+ +a+e+G+l l a ++
  MMETSP1061-20121228|10282_1  52 NQPDLLKGEQEYKQYVnrINDKNMLNRKYNVVQRVRELDLLQATVDNGILSkleknGldlaTVEKLLPLAEEYGLLSLAANNQ 134
                  89******76655543224556789***************9877654433300001211112345566677777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1273.98
//
Query:       MMETSP1061-20121228|10318_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1649.86
//
Query:       MMETSP1061-20121228|10350_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 305.97
//
Query:       MMETSP1061-20121228|10379_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.0   0.6      0.012   12.8   0.4    1.0  1  TIGR02415 23BDH: acetoin reductases


Domain annotation for each model (and alignments):
>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.4     3e-06     0.012      53     120 ..       6      72 ..       2      73 .] 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3e-06
    TIGR02415  53 avkldvsdkseveeaveqaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaa 120
                  a k + ++++e ++ v+ a++ +G  +    na     ++ +e + ++ e++ nvn+++  fG+  aa
  MMETSP1061-20121228|10379_1   6 AWKEEKRNQKETQKNVNMAAAGFGV-EQAARNADFEREKAWKEAQRNQKETQKNVNMAAAGFGVEQAA 72 
                  6677789999*************95.667899********************************7776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 437.96
//
Query:       MMETSP1061-20121228|10390_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2594.09
//
Query:       MMETSP1061-20121228|10415_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 290.38
//
Query:       MMETSP1061-20121228|10505_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 954.72
//
Query:       MMETSP1061-20121228|10534_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|10551_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|10556_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|10562_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.17
# Mc/sec: 333.85
//
Query:       MMETSP1061-20121228|10587_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-12   43.4   0.2    9.3e-12   43.2   0.1    1.1  1  TIGR02052 MerP: mercuric transport protein periplasmic component
    1.2e-11   42.5   1.4    7.2e-11   40.0   0.1    2.0  2  TIGR00003 TIGR00003: copper ion binding protein


Domain annotation for each model (and alignments):
>> TIGR02052  MerP: mercuric transport protein periplasmic component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.1   4.5e-15   9.3e-12      22      87 ..      26      92 ..      15      94 .] 0.92

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 4.5e-15
    TIGR02052 22 tktvtlevPgmtcaacPitvktalkkvdGvekaevsfkqklavvtfddekt.nvkaltkatkdaGyP 87
                  ktv  +v gmtc+ c  ++++al+ + G++ + +s +++ a vt+ ++kt +++ +++  +d Gy 
  MMETSP1061-20121228|10587_1 26 LKTVEYAVGGMTCSMCSSAIHKALTSIAGIQSVTISLATNIARVTYIESKTlTAEIIAEEIEDIGYD 92
                 69************************************************96788899999***995 PP

>> TIGR00003  TIGR00003: copper ion binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.1     0.028        58      56      65 ..       3      12 ..       1      13 [. 0.85
   2 !   40.0   0.1   3.5e-14   7.2e-11       3      65 ..      30      93 ..      28      94 .] 0.92

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.028
    TIGR00003 56 eAildaGyev 65
                 e i+d Gy+v
  MMETSP1061-20121228|10587_1  3 EEIEDIGYDV 12
                 779******9 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 3.5e-14
    TIGR00003  3 tlqVkgmsCnHCVdkiEkfVGeleGVsavkvdlekekvvVeFdapk.vsaeeIkeAildaGyev 65
                 +  V gm+C  C  +i k+   + G++ v ++l  + + V + + k  +ae I+e i+d Gy+v
  MMETSP1061-20121228|10587_1 30 EYAVGGMTCSMCSSAIHKALTSIAGIQSVTISLATNIARVTYIESKtLTAEIIAEEIEDIGYDV 93
                 7789*************************************97766268999***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 477.19
//
Query:       MMETSP1061-20121228|10595_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|10617_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 355.80
//
Query:       MMETSP1061-20121228|10623_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.49    8.1   4.9         21    2.9   0.1    3.5  3  TIGR03068 srtB_sig_NPQTN: sortase B signal domain, NPQTN class


Domain annotation for each model (and alignments):
>> TIGR03068  srtB_sig_NPQTN: sortase B signal domain, NPQTN class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.1    0.0051        21       6      12 ..      28      34 ..      25      36 .. 0.85
   2 ?    2.7   0.1    0.0057        23       6      11 ..      82      87 ..      79      89 .. 0.85
   3 ?    2.4   0.1    0.0074        30       6      11 ..     139     144 ..     137     146 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0051
    TIGR03068  6 AGTPAYI 12
                 AGTPA++
  MMETSP1061-20121228|10623_1 28 AGTPAFL 34
                 9****85 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.0057
    TIGR03068  6 AGTPAY 11
                 AGTPA+
  MMETSP1061-20121228|10623_1 82 AGTPAF 87
                 9****8 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.0074
    TIGR03068   6 AGTPAY 11 
                  AGTPA+
  MMETSP1061-20121228|10623_1 139 AGTPAF 144
                  9****8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 1292.10
//
Query:       MMETSP1061-20121228|10651_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 766.79
//
Query:       MMETSP1061-20121228|10688_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.92    6.8   5.7       0.88    6.9   4.0    1.0  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   4.0   0.00021      0.88      31      53 ..       4      28 ..       1      39 [. 0.38

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00021
    TIGR03593 31 kppaaaqqaesqsaa....aaaaasaa 53
                 ++++++qq+++q+++    a  +a+a 
  MMETSP1061-20121228|10688_1  4 QQQQQQQQQQQQQQQpgggA--SAPAP 28
                 23333333333333323321..22222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 239.98
//
Query:       MMETSP1061-20121228|10721_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 547.75
//
Query:       MMETSP1061-20121228|10732_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   11.1   3.9      0.039   10.9   2.7    1.0  1  TIGR00776 RhaT: RhaT L-rhamnose-proton symporter family protein


Domain annotation for each model (and alignments):
>> TIGR00776  RhaT: RhaT L-rhamnose-proton symporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   2.7   9.5e-06     0.039      66      96 ..       9      40 ..       6      43 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 9.5e-06
    TIGR00776 66 Galwalgqin..qlksmrllGvSktmpistGlq 96
                 G +w+l q    q+++m  +G+S++m++s+G+ 
  MMETSP1061-20121228|10732_1  9 GPVWSLEQCSavQGQAM-GMGMSMGMGMSMGMG 40
                 789***99761155555.59***********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 388.63
//
Query:       MMETSP1061-20121228|10736_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-15   52.7   0.2    9.9e-15   52.4   0.1    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.4   0.1   2.4e-18   9.9e-15       1      69 [.       1      66 [.       1      75 [. 0.94

  Alignments for each domain:
  == domain 1    score: 52.4 bits;  conditional E-value: 2.4e-18
    TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikekdf 69
                 +++ +Ktl ++++++++ep++t+ ++K ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +  
  MMETSP1061-20121228|10736_1  1 MQIFVKTLTGKTITLEVEPSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66
                 8999*******************************...**************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 582.57
//
Query:       MMETSP1061-20121228|10750_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.75
# Mc/sec: 557.87
//
Query:       MMETSP1061-20121228|10790_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 555.74
//
Query:       MMETSP1061-20121228|10789_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1074.77
//
Query:       MMETSP1061-20121228|10793_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-44  148.6  12.4    1.9e-42  143.3   8.6    2.0  1  TIGR01310 L7: 60S ribosomal protein L7
    3.7e-11   41.2   0.0    5.5e-11   40.7   0.0    1.2  1  TIGR01309 L30P_arch: ribosomal protein L30P


Domain annotation for each model (and alignments):
>> TIGR01310  L7: 60S ribosomal protein L7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.3   8.6   9.1e-46   1.9e-42      27     235 ..      38     279 ..      15     280 .] 0.75

  Alignments for each domain:
  == domain 1    score: 143.3 bits;  conditional E-value: 9.1e-46
    TIGR01310  27 kenkkkkkkkfkRaekfvkeyekaerekirlkr..............................eakkkgklyv...eaekklvFviRikginkldpk.vrkvlklLrLkkvnngvFvkvnkatlelLrivePyVayGyPnlksvreLiyKrGfakidgkrvpltdnalieqaLg.kfgvicieDliheiatvGphFkevnnfLwpfkLssPskgfkkkkkkksfkeggdaGnreekINeLikkm 235
                  k+ + +k +++++ ++f  + +++++e+ir +r                              ++++++ ++       +  vFviRi+   + +p+ v ++l +LrLk+ n+gvFv+ ++ t++ L++veP+V+yG P+   v +L+ ++ f+ ++g++vpl+dn++ie+aLg ++g+ic+eDl+he++t G+ F +v nfL pf Ls  + +f+k     s k+g ++G+++e+I e ik+m
  MMETSP1061-20121228|10793_1  38 KKSSVRKGTYVRKPATFLAKAKQRRHEQIRYRRvkkkgmqkraskkteiktkeivvggnsdsdDEEQTQVIQYkanSVGSPYVFVIRIREDAGHPPRcVLNILLQLRLKEANTGVFVRYTEITKRHLHLVEPWVVYGKPSDGLVGDLMERKSFGTVKGEKVPLSDNTIIENALGnEHGMICMEDLVHELTTFGKSFDDVANFLRPFPLSATRSRFEK--NLLSLKQGKEYGDQGEEIDEYIKQM 279
                  2222222333333444444444444444433333334444444444444445599999999874444444433000345789********99999873679************************************************************************9459********************************99999998..99999*******************9 PP

>> TIGR01309  L30P_arch: ribosomal protein L30P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.7e-14   5.5e-11       3     151 .]     122     280 .]     120     280 .] 0.84

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 2.7e-14
    TIGR01309   3 viriRGtvdvk.rdiedtlelLrlrkvnhavlvpeteslkgmlqkvkdyvtyGeidedtLeellrkRgr..lkGdk.kvtdeyvkek.t....glesveelakalvegeikleeag.lkpviRLhPPrkGfesikkaykegGelGyrgekineLlkkml 151
                  viriR  ++ + r + + l  Lrl++ n+ v v+ te +k  l+ v+++v yG  ++  + +l+++++   +kG+k  ++d+ + e+ +    g+  +e+l+++l     ++++++ +   + L   r  fe    + k+g e G +ge+i+e +k+ml
  MMETSP1061-20121228|10793_1 122 VIRIREDAGHPpRCVLNILLQLRLKEANTGVFVRYTEITKRHLHLVEPWVVYGKPSDGLVGDLMERKSFgtVKGEKvPLSDNTIIENaLgnehGMICMEDLVHELTTFGKSFDDVAnFLRPFPLSATRSRFEKNLLSLKQGKEYGDQGEEIDEYIKQML 280
                  89***9998762678899999*******************************************9875444***9855788766554141111455688888888888888999877999999*********99999********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1421.42
//
Query:       MMETSP1061-20121228|10788_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   12.6  74.2      0.016   10.7  34.9    2.3  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.28    6.6  76.9      0.029    9.8  11.1    2.7  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9  11.1   0.00011      0.23     295     490 ..      36     225 ..      21     245 .. 0.51
   2 !   10.7  34.9     8e-06     0.016     669     927 ..     298     561 ..     263     584 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00011
    TIGR02168 295 aeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlq 490
                  +e+s++++e  +lk++l ++++e eel ++ + +++k  el++ +++++   +++++  +sl a+ +e  +e +el+ ++++le el + + ++ el+ q++++n+ l ++ + + +l++   + + +      +  ++ ++l   q+++++ + + + +++++e+l+e+ +ele e   ++ +++ +e++++ ++
  MMETSP1061-20121228|10788_1  36 EELSAVKNENSRLKQSLTRVQTECEELRDESNFNRAKILELSDLVSSSN-SPKQMTAMKDSLIAKKKE--KENAELTLAVNKLEVELYQSELKLEELQLQKKANNKLLLEMGDVIRALNAIDIECDPSLM---LNSGNNPENLTPQQMSINNIKLKVDAMKKDREQLVERCKELEGECVDQQLKVDVLESRFQFVN 225
                  3344444444444444444444444444333333333333333332222.222222223333332222..344455556666666666666666666666666666666666666666666433333322...223334556666666666666666666666666666666666666666666666555555444 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 8e-06
    TIGR02168 669 k.tessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel..keaeeeieeleaeieqlkeelkalrealseleaelt..elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelrekla 927
                     ++++++ +k+ +  + +i++le++ +++ ++l++l++el + + e +++  + +el+ +l++  +++++l+ e+ ++++++++l++++ +le+e e+ +++ ee+e+e     +e+e+e++++++   +e+++ ++++ ++ e++++  +l  ++ ++++r+++le ++ +++++   ++ +  + e ++  + ++ +++e+e++e+e++l+++l+e + ++ ++++ re+ +e++++l ++ ++++ l+++ +   ++  
  MMETSP1061-20121228|10788_1 298 AdHAKELFAVRKSQQIQKDKIQRLEKQNENTYNQLTNLREELVNSRLENRNIAIKRDELKSNLNDIMNHYKSLNIEHDAAKDTIKELQSHIDRLEAELESSKRDQEENEKEEeqGPQEQEQEQEQEQVGGGEEKATIEKSSSASSEDAISveDLTLAYGRAKKRIKELELRLIQVAEMSLIVKGTDGNGERQLHPAINRYKTIERERNEFEQQLKKALEETRLARLEVEKEREASKEVRRRLAAAYTQQQMLKADDDTSSTRSV 561
                  334444455555555555566666666666666666666666666666666666666666666666666666666666666666666666666666666655555555444411345666666666666666666655555555555554447788888888888888888888888888888888888888888888888888888888888888888888888888888888888888777776666655554444433333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  11.1   1.4e-05     0.029     702     888 ..      35     224 ..      18     234 .. 0.85
   2 ?    1.0  36.5    0.0067        14     685     943 ..     291     556 ..     271     576 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 1.4e-05
    TIGR02169 702 ekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklsele..eeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnkle.lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdL 888
                  +++l++++++ s+ ++++ +++ e e+l++e + +++++ el + +s+ +  +++++ k++l + ++e e+ e +la  k ++e  + el+ e+++  ++  +kl  e+ ++  +l++i+ e + +  l+     e+   +q +i++++ + ++++k  e+l  + +ele e   ++ +v  Le++ + +
  MMETSP1061-20121228|10788_1  35 NEELSAVKNENSRLKQSLTRVQTECEELRDESNFNRAKILELSDLVSSSNspKQMTAMKDSLIAKKKEKENAELTLAVNKLEVELYQSELKLEELQLQKKANNKLLLEMGDVIRALNAIDIECDPSLmLNSGNNPENLTPQQMSINNIKLKVDAMKKDREQLVERCKELEGECVDQQLKVDVLESRFQFV 224
                  678889999999*****************************999887765225678888888888888888888888888888888888888888888888999999999999999999999998875777778888889999999*********************************99999987655 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.0067
    TIGR02169 685 eeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeele.kleeevsriearleeieaelnkleleke.lleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleel....eaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev.ke 943
                     ++++++ ++el  ++k  +  ++k+++ ek+ e+  ++l +l+ee  +++ +  +++ k +el+ +l++  ++ k+l+ e ++ + ++++l+ +++ leael+++k ++ e+e+e ++  + +++e+  e++    +k ++ek  ++++e +  +e+   +  + k++ ke+e   ++++e++  ++ +    e +++   +++k +++er+e e++l+++ ++ + + +e+ek+r+  ke + +l+a+  + + l++   ++
  MMETSP1061-20121228|10788_1 291 SLYKEKQADHAKELFAVRKSQQIQKDKIQRLEKQNENTYNQLTNLREELVNSRLENRNIAIKRDELKSNLNDIMNHYKSLNIEHDAAKDTIKELQSHIDRLEAELESSKRDQEENEKEeEQGPQEQEQEQEQEQVGGGEEKATIEKSsSASSEDAISVEDLTLAYGRAKKRIKELELRLIQVAEMSLIVKGTdgngERQLHPAINRYKTIERERNEFEQQLKKALEETRLARLEVEKEREASKEVRRRLAAAYTQQQMLKADDdTS 556
                  44455566667777777777777788888888888888888888888888888888888888888888888888888899999999999999999999999999998888777666541566788888888899999888888666514555566667777777788888889999999999999999987621113444445689999999999999999999999999999999999999999999988888877777643222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       539  (0.131399); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.14s 00:00:00.67 Elapsed: 00:00:00.47
# Mc/sec: 1645.65
//
Query:       MMETSP1061-20121228|10795_1  [L=838]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (838 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 3253.14
//
Query:       MMETSP1061-20121228|10797_1  [L=793]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (793 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       280  (0.0682594); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.94u 0.17s 00:00:01.10 Elapsed: 00:00:00.82
# Mc/sec: 1276.43
//
Query:       MMETSP1061-20121228|10799_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2396.11
//
Query:       MMETSP1061-20121228|10798_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1377.28
//
Query:       MMETSP1061-20121228|10803_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 424.66
//
Query:       MMETSP1061-20121228|10804_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   12.4   0.4      0.041   12.2   0.3    1.2  1  TIGR03894 chp_P_marinus_1: conserved hypothetical protein, TIGR03894 family


Domain annotation for each model (and alignments):
>> TIGR03894  chp_P_marinus_1: conserved hypothetical protein, TIGR03894 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.3   9.9e-06     0.041      50      77 ..       7      34 ..       2      52 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.9e-06
    TIGR03894 50 amvvgviaeqepddeenegeeketkees 77
                 ++v+g+++ +e +++e+e+e++++ +++
  MMETSP1061-20121228|10804_1  7 SVVLGTCTGMEVNENEDENENGDEMTVT 34
                 69**************999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1061-20121228|10802_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-63  209.8   0.0    9.9e-63  209.4   0.0    1.1  1  TIGR01351 adk: adenylate kinases
    8.1e-32  108.5   0.0    2.9e-23   80.6   0.0    2.1  2  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    6.3e-30  102.1   0.0    2.3e-22   77.4   0.0    2.1  2  TIGR01360 aden_kin_iso1: adenylate kinase
     0.0086   13.9   0.1      0.026   12.3   0.0    1.9  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.4   0.0   9.6e-66   9.9e-63       3     209 ..      87     289 ..      85     292 .. 0.93

  Alignments for each domain:
  == domain 1    score: 209.4 bits;  conditional E-value: 9.6e-66
    TIGR01351   3 vllGpPGsGKGTqakrlaekl.glvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRricpkcgkvynlkfkkpkv.ecddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkieevlkeile 209
                  ++lG PG GKGT++ ++ + + ++ h+stGdllR++v+++telg +a+ y+++Gklvpd+++i+lv e+ +   ++ ++++LDGfPRt+ QaeaL++ +     ++d v++l++p+e+++er+s+R+i++ +g++y  ++k+pkv   dd+t+e l+qR+DD++e+v++Rle Y+e t+pl++yY+k+++l +++++ + + ++ e+++
  MMETSP1061-20121228|10802_1  87 LILGKPGGGKGTISGKILKDFpQFHHVSTGDLLRSHVREETELGLEAAGYMKEGKLVPDQLMIDLVVEESTPFLEKGESLLLDGFPRTVGQAEALENSV-----HVDIVVNLDIPNETIIERLSDRWIHEPSGRIYSYSYKPPKVeGFDDETGEALVQRHDDKPETVQARLELYDEATSPLVQYYEKNEVLKTFQGT-QSDVIYPEVKK 289
                  89************99988874799*****************************************9999998999999*****************976.....59***************************************99**********************************************9654.55677777666 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   2.8e-26   2.9e-23       3     132 ..      87     215 ..      85     219 .. 0.88
   2 !   25.8   0.0   1.8e-09   1.8e-06     131     184 ..     239     291 ..     232     292 .. 0.91

  Alignments for each domain:
  == domain 1    score: 80.6 bits;  conditional E-value: 2.8e-26
    TIGR01359   3 fvlGgPGsGkGtqCakiveef.kfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaike.seeskkflidGfPrneenleaweklidekvevkfvlfldcseevmvkrllkr..gqssGr 132
                  ++lG PG GkGt+  ki ++f +f h+s+Gdllr+ ++ e+ e g   + ++keGk+vP ++ ++l+ ++ +   e+ +++l+dGfPr     ea e    ++v+v++v+ ld+++e++++rl +r   + sGr
  MMETSP1061-20121228|10802_1  87 LILGKPGGGKGTISGKILKDFpQFHHVSTGDLLRSHVR-EETELGLEAAGYMKEGKLVPDQLMIDLVVEESTPfLEKGESLLLDGFPRTVGQAEALE----NSVHVDIVVNLDIPNETIIERLSDRwiHEPSGR 215
                  69*******************6699**********998.889************************87765541567899*********99998877....7899********************933345777 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 1.8e-09
    TIGR01359 131 Grvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeevekif 184
                   r dd  e+++ rle y+e t p+++y+ek++ +k+ ++++s + ++ ev+k +
  MMETSP1061-20121228|10802_1 239 QRHDDKPETVQARLELYDEATSPLVQYYEKNEVLKTFQGTQS-DVIYPEVKKWL 291
                  599*****************************9999999876.99*****9976 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.4   0.0   2.2e-25   2.3e-22       5     127 ..      85     207 ..      81     216 .. 0.94
   2 !   22.6   0.0   1.5e-08   1.5e-05     132     178 ..     239     284 ..     232     293 .. 0.77

  Alignments for each domain:
  == domain 1    score: 77.4 bits;  conditional E-value: 2.2e-25
    TIGR01360   5 iifivGGpGsGkGtqcekiveky.GfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekriaeaklvlyldvsedtlvkrllkr 127
                     i+G pG GkGt   ki++ +  f h+s+Gdllr  v  ++e g +    m++G+lvp + ++dl+ e  +  lek   +l+dG+pr v q e +e+ +   ++v+ ld+ ++t+++rl +r
  MMETSP1061-20121228|10802_1  85 FALILGKPGGGKGTISGKILKDFpQFHHVSTGDLLRSHVREETELGLEAAGYMKEGKLVPDQLMIDLVVEESTPFLEKGESLLLDGFPRTVGQAEALENSVH-VDIVVNLDIPNETIIERLSDR 207
                  5679*****************995699***********************************************************************9985.79***************9887 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.5e-08
    TIGR01360 132 arvddnektikkrletykkatepvieyyeskgkllkinaegtvddvf 178
                   r dd+ +t+++rle y +at+p+++yye +  l++     + d ++
  MMETSP1061-20121228|10802_1 239 QRHDDKPETVQARLELYDEATSPLVQYYEKNEVLKTFQ-GTQSDVIY 284
                  599**************************966555543.34445555 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.53   5.4e+02      29      49 ..      63      83 ..      53      87 .. 0.83
   2 !   12.3   0.0   2.6e-05     0.026       5      55 ..      88     141 ..      84     208 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.53
    TIGR02173 29 isaGkirelaekkgldlaesk 49
                 +s+G+ r ++  ++++ +e+ 
  MMETSP1061-20121228|10802_1 63 MSTGDDRPMSTAMEMEAEEES 83
                 799999999999999998865 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.6e-05
    TIGR02173   5 isGpPGsGkttvakilaekl.slklisaGki.r.elaekkgldlaeskkaeeek 55 
                  i G+PG Gk t++ ++ +++ +++++s+G++ r ++ e+ +l l+   + +e k
  MMETSP1061-20121228|10802_1  88 ILGKPGGGKGTISGKILKDFpQFHHVSTGDLlRsHVREETELGLEAAGYMKEGK 141
                  78**********97777666389******9634245667777777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.34
# Mc/sec: 1152.96
//
Query:       MMETSP1061-20121228|10809_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-28   96.2   0.0    2.8e-28   95.8   0.0    1.2  1  TIGR02180 GRX_euk: glutaredoxin
      3e-17   60.3   0.0    3.6e-17   60.0   0.0    1.1  1  TIGR02189 GlrX-like_plant: glutaredoxin-like family
    2.5e-15   54.4   0.0    3.2e-15   54.0   0.0    1.1  1  TIGR02181 GRX_bact: glutaredoxin 3
    1.4e-12   45.3   0.0    2.2e-12   44.6   0.0    1.3  1  TIGR02190 GlrX-dom: glutaredoxin-family domain
    2.9e-08   31.6   0.0    5.2e-08   30.8   0.0    1.4  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    1.3e-07   29.9   0.1    2.6e-07   28.9   0.1    1.5  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    6.3e-06   24.4   0.0      1e-05   23.7   0.0    1.3  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
    0.00014   19.8   0.0    0.00032   18.7   0.0    1.6  1  TIGR02183 GRXA: glutaredoxin, GrxA family
     0.0062   14.1   0.0     0.0073   13.8   0.0    1.2  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
  ------ inclusion threshold ------
      0.014   13.4   0.1      0.022   12.8   0.1    1.4  1  TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.8   0.0   6.9e-31   2.8e-28       1      84 []      31     114 ..      31     114 .. 0.94

  Alignments for each domain:
  == domain 1    score: 95.8 bits;  conditional E-value: 6.9e-31
    TIGR02180   1 VvvfsKsyCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkleell 84 
                  VvvfsK+yCpYc+ +k+l+  ++ + ++ + eldk ++g+++q+ L +++gqrtVP+++i+gkf+GG++++++++k+g+le++l
  MMETSP1061-20121228|10809_1  31 VVVFSKTYCPYCTSTKKLFGTQYSSVDVVTHELDKRDDGAAIQATLASMSGQRTVPSVWIGGKFVGGNSETQAAHKSGELETML 114
                  8******************988755449****************************************************9875 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.0   0.0   8.8e-20   3.6e-17       3      91 ..      24     114 ..      22     116 .. 0.92

  Alignments for each domain:
  == domain 1    score: 60.0 bits;  conditional E-value: 8.8e-20
    TIGR02189   3 rlvsekavvifskssCClshvvkrLlle..lGvnPavveldkeaeakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpll 91 
                  + +  + vv+fsk+ C  + + k+L+ +    v+ + +eldk+++++ i++ l++++++ +vP v++GGk+vGg  e  a+h sg+L  +l
  MMETSP1061-20121228|10809_1  24 EQINAHKVVVFSKTYCPYCTSTKKLFGTqySSVDVVTHELDKRDDGAAIQATLASMSGQRTVPSVWIGGKFVGGNSETQAAHKSGELETML 114
                  5678899*******************76225899999**************************************************9887 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   7.8e-18   3.2e-15       1      80 []      31     114 ..      31     114 .. 0.80

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 7.8e-18
    TIGR02181   1 vviYtkksCpycsrAkalLeek..gvefeeievdkdk..eareemierskgrrtvPQifigdvhvGGcddLlaleregkLdkLL 80 
                  vv+++k++Cpyc++ k+l  ++  +v++  +e+dk +  +a +  ++  +g+rtvP ++ig + vGG+++ +a +++g+L+++L
  MMETSP1061-20121228|10809_1  31 VVVFSKTYCPYCTSTKKLFGTQysSVDVVTHELDKRDdgAAIQATLASMSGQRTVPSVWIGGKFVGGNSETQAAHKSGELETML 114
                  799***************976522555556666654433566665555558******************************998 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   5.3e-15   2.2e-12       7      75 ..      28     102 ..      23     105 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 5.3e-15
    TIGR02190   7 kesvsvftkpGCPfCakakavLkek..GldfeeivLgkdirtrslra....vtGattvPqvfinGkliGgsdele 75 
                   ++v+vf+k  CP+C   k++   +   +d +   L+k   + +++a    ++G+ tvP v+i+Gk++Gg  e +
  MMETSP1061-20121228|10809_1  28 AHKVVVFSKTYCPYCTSTKKLFGTQysSVDVVTHELDKRDDGAAIQAtlasMSGQRTVPSVWIGGKFVGGNSETQ 102
                  568****************976443114555555699987777666533338******************98865 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.3e-10   5.2e-08       3      97 ..      20     114 ..      18     116 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.3e-10
    TIGR00365   3 ekikeqvkenkvvlymkGtpelpqCGfsakavqi.lkalgvefatvnvled.eeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkll 97 
                  + i+eq++ +kvv++ k    +p C  ++k      ++++v  ++++  +d ++i+++l ++s   t+P +++ g++vGG    +  ++sgel+++l
  MMETSP1061-20121228|10809_1  20 SFINEQINAHKVVVFSKT--YCPYCTSTKKLFGTqYSSVDVVTHELDKRDDgAAIQATLASMSGQRTVPSVWIGGKFVGGNSETQAAHKSGELETML 114
                  5799***********985..578887666554321334444444444444435799**************************************987 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.1   6.2e-10   2.6e-07       1      64 [.      30      98 ..      30     104 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 6.2e-10
    TIGR02196  1 kvkvYttpwCppCkkakeyLksk....giafeeidvekdsaaae.ellkklgqrsvPvivigekivvGF 64
                 kv v++++ Cp+C  +k+ + ++     +  +e+d ++d aa +  l + +gqr vP + ig+k v G 
  MMETSP1061-20121228|10809_1 30 KVVVFSKTYCPYCTSTKKLFGTQyssvDVVTHELDKRDDGAAIQaTLASMSGQRTVPSVWIGGKFVGGN 98
                 799***************9954312114455556666677776525778899************88775 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   2.5e-08     1e-05       2      57 ..      31      90 ..      30     106 .. 0.64

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 2.5e-08
    TIGR02200  2 vtvYatswCgyCaslkrtL..dkdgaeYevvdiek.deeaa..dyvksvndGnktvPtVkf 57
                 v v+ +++C+yC s k+    +   ++  +++++k d++aa  +   s++ G++tvP V +
  MMETSP1061-20121228|10809_1 31 VVVFSKTYCPYCTSTKKLFgtQYSSVDVVTHELDKrDDGAAiqATLASMS-GQRTVPSVWI 90
                 7899**********998764344445555555665244554223345777.*******944 PP

>> TIGR02183  GRXA: glutaredoxin, GrxA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   7.7e-07   0.00032       2      79 ..      31     106 ..      30     112 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 7.7e-07
    TIGR02183   2 vvifGrpgcpycvrakqlaeklakeladfefryvdihaeGis.kadlektvGkpvetvpqifvdekavGGctdfealvk 79 
                  vv+f +  cpyc  +k+l     + ++    + +d   +G + +a l+   G+   tvp +++  k vGG ++ +a  k
  MMETSP1061-20121228|10809_1  31 VVVFSKTYCPYCTSTKKLFGTQYSSVDVVT-HELDKRDDGAAiQATLASMSGQ--RTVPSVWIGGKFVGGNSETQAAHK 106
                  89****************988777766555.5579999987725667777776..6***************99988766 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.8e-05    0.0073      46      89 ..      23      64 ..       3      79 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.8e-05
    TIGR02738 46 kvlledyklvlfyqstCpyChqfapvLkqlsqqtglevlayslD 89
                 +   + +k+v f +  CpyC      +   +q   ++v+   lD
  MMETSP1061-20121228|10809_1 23 NEQINAHKVVVFSKTYCPYCTSTKKLFG--TQYSSVDVVTHELD 64
                 456789**************87654433..23334555555555 PP

>> TIGR02194  GlrX_NrdH: glutaredoxin-like protein NrdH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1   5.4e-05     0.022       1      29 [.      31      59 ..      31      99 .. 0.65

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 5.4e-05
    TIGR02194  1 itvysknnCvqCkatkkaleeqniafeei 29
                 ++v+sk  C  C  tkk + +q  + + +
  MMETSP1061-20121228|10809_1 31 VVVFSKTYCPYCTSTKKLFGTQYSSVDVV 59
                 78****************98765444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 643.45
//
Query:       MMETSP1061-20121228|10807_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1766.95
//
Query:       MMETSP1061-20121228|10812_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 715.52
//
Query:       MMETSP1061-20121228|10811_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 1103.91
//
Query:       MMETSP1061-20121228|10813_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1263.32
//
Query:       MMETSP1061-20121228|10814_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 803.93
//
Query:       MMETSP1061-20121228|10816_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-21   74.6   0.0      6e-21   72.8   0.0    1.8  2  TIGR00160 MGSA: methylglyoxal synthase


Domain annotation for each model (and alignments):
>> TIGR00160  MGSA: methylglyoxal synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.12   4.9e+02     108     138 ..      79     109 ..      64     113 .. 0.77
   2 !   72.8   0.0   1.5e-24     6e-21       5     119 ..     238     359 ..     234     376 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.12
    TIGR00160 108 ainlataeiliksllfekaveilvfdyegyl 138
                   in    e +i    ++ + ei++ +y+ ++
  MMETSP1061-20121228|10816_1  79 NINTDHVERVIDEFDKDGDGEIDFCEYKTMV 109
                  5788889999999999999999999998876 PP

  == domain 2    score: 72.8 bits;  conditional E-value: 1.5e-24
    TIGR00160   5 ialiahdkkkedlvnfvkkhkellkkyklyatGttGelier.......atglaiekllsGPlGGdqqigaliaegkidlviflrdPltaqPhePdvkallrladvyniPlainlataeilik 119
                  +al++h++ k ++ +fv ++k+llkk+ l  t  t +++++        t l   +  sGPlGGd  + +l++ g+i  ++f+rdP+ a Ph  d+ +l+r a v+n  +a   ++a ++ +
  MMETSP1061-20121228|10816_1 238 LALVSHNEMKTTMREFVMANKNLLKKFRLTGTNSTMTMLKEvfkdeekGTVLFGPACASGPLGGDAELVSLMVSGRIGGILFFRDPMSAHPHRADIDCLVRQALVHNTMMAETPTSALMMAH 359
                  79*********************************9988642222211466666799***************************************************99988777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2152.44
//
Query:       MMETSP1061-20121228|10817_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.9    5.8   6.0        1.8    6.5   0.3    2.9  3  TIGR03063 srtB_target: sortase B cell surface sorting signal


Domain annotation for each model (and alignments):
>> TIGR03063  srtB_target: sortase B cell surface sorting signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.11   4.7e+02       9      16 ..       6      13 ..       6      19 .. 0.74
   2 ?    0.4   0.3     0.034   1.4e+02      14      25 ..      31      43 ..      30      44 .. 0.81
   3 ?    6.5   0.3   0.00043       1.8       3      10 ..     128     135 ..     128     136 .. 0.96

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.11
    TIGR03063  9 qigLYavL 16
                 +i+L+a+ 
  MMETSP1061-20121228|10817_1  6 SIALFAAV 13
                 68999875 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.034
    TIGR03063 14 avLf.lgSglvLi 25
                 + L+ +g+g++L+
  MMETSP1061-20121228|10817_1 31 GKLLgAGAGAFLA 43
                 568889*****96 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.00043
    TIGR03063   3 KTgDsAqi 10 
                  KT+DsA+i
  MMETSP1061-20121228|10817_1 128 KTNDSAMI 135
                  9******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 934.08
//
Query:       MMETSP1061-20121228|10815_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-08   31.8   0.0    3.3e-08   31.0   0.0    1.4  1  TIGR00065 ftsZ: cell division protein FtsZ


Domain annotation for each model (and alignments):
>> TIGR00065  ftsZ: cell division protein FtsZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   8.2e-12   3.3e-08      84     216 ..     109     250 ..      91     257 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 8.2e-12
    TIGR00065  84 GrkaAeeskdeikkllegadlv...fitaGlGgGTGTGa.aPvvakiakel...giLtvavvtkPfkfEgkkrrkkAeeGleeLkkavDslivipNdkllevvpk..lplkeafkvadevlvkavkgiselItkpglinvDF 216
                  G+++ ++  + ++k+ eg ++     it  +GgGTG G  +  v+ki +e     i t +v+  P   +      +A+  +++L + +D    ++N+ l +++ +  +  +  ++  ++++++a+ g +  +  pg++n D 
  MMETSP1061-20121228|10815_1 109 GAELVDSIMECVRKEAEGCEVLqgfQITHSMGGGTGSGMgTLLVSKIKEEYpdrIISTYSVIPSPKVSDTVVEPYNATLSIHQLVENADQSFALDNEALYDICFRtlKLANPTYSDLNNLIANAITGTTCSLRFPGQLNCDL 250
                  56666777777888888887753325999*********626678999887533146689*******************************************99884445779**************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2553.70
//
Query:       MMETSP1061-20121228|10835_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.5e-119  395.9   0.8   5.6e-119  395.6   0.5    1.1  1  TIGR01035 hemA: glutamyl-tRNA reductase
    3.3e-07   27.6   0.0    6.8e-07   26.5   0.0    1.4  1  TIGR00507 aroE: shikimate 5-dehydrogenase
    4.1e-05   20.7   0.1    0.00012   19.1   0.0    1.7  2  TIGR01809 Shik-DH-AROM: shikimate-5-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  395.6   0.5  4.1e-122  5.6e-119       2     415 ..     150     575 ..     149     576 .. 0.96

  Alignments for each domain:
  == domain 1    score: 395.6 bits;  conditional E-value: 4.1e-122
    TIGR01035   2 lvlgvshksapvevrEklsideeelkkaleslkaepsieeaivlsTCNRvEiyavvenleelksallkilaetkklseedlekyllilldesaveHlfrVasgLdSlvvGEeQilgQvkeaykvakeektv.gkvLerlfkkalkvgkrvrteTdIsksavSvssaAvelaeki.lgs....LkgkkvlliGaGemaeLvakhLkekgvkkvlilnRtyekaekLakeleeeavkle...kleealaeadivissTgapepivskedleralkerkrplllvDiavPRdvdpevaelegvflydvDdlkevveenlaerkeeaekaeaiveeeveefkqwlrsleveptikelrekaeevrekelekalkkleak...keekevleklakklvnkllheptvklkelaekeeseellealkelfdl 415
                   ++g+s  +a+vevrEkl++ e + + a +++     + ea+vlsTCNR+Eiy  + +    + +++k+la+ + l +++l+k l++l +++av H++rVa gLdSl+vGE Qil+Qv++++  + ee  + gkvL rl+++a+ +gkrvr+eT+Isk++vSvssaAvel e   +++     ++++  ++GaG m  L++ hL+ +g++k++i+nR++++ ++La+++ +  ++++   +l +++   div ++T+++++++ ++++e    +  rp++lvDi+vPR++ ++ ++l+++ +y+vDdlk vv++n a r++e+ +ae +++ee  +f +w +sl++ pti++l+e+a+++re+el+ka++kl +    ++e e +e+l++ +vnkllh p+ +l++++  e ++++l++l+++f l
  MMETSP1061-20121228|10835_1 150 HCVGLSIHHADVEVREKLAVAECDWNTASNEICDGGDVAEAAVLSTCNRFEIYYAASDPRAAMASVTKFLAKRSGLPVTELRKNLFMLSGDDAVWHIMRVAGGLDSLIVGEGQILSQVRQCHLHSIEEDGCgGKVLSRLLNNAVAAGKRVRSETGISKGSVSVSSAAVELTEMLsVQDlnlpFSEARLAVVGAGTMTRLLVTHLASRGLEKITIVNRSMQRPQELAEQFPDVDIEIKlmdDLWDVVGRSDIVYTATSSVDYVIDQQKMEANGLAGGRPMMLVDISVPRNIGEDCKNLPNAHVYNVDDLKAVVAKNTAMRQKEMIEAENLLKEEAFQFGAWRESLSAIPTINQLQERANSFREEELAKATRKLANAnltDKEMEAVERLSRGIVNKLLHGPMAHLRKTETIEGKQQTLKELNSMFRL 575
                  6899***********************************************************************************************************************99887776369************************************997524445556799**********************************************9999888889****************************999989**************************************************************************************************9899888999***************************************9976 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     5e-10   6.8e-07     109     205 ..     326     423 ..     318     437 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 5e-10
    TIGR00507 109 eklsklksekrvliiGAGGaakavaleLlka.dkeviiaNRtvekaeelaerlqelgeilalsleevelkk.vdliinatsaglsgeideaevkaellk 205
                  + l+ + se r++++GAG  ++ ++++L++   ++++i+NR++++ +elae+++ +  +++l  +  +     d++  ats ++   id+++++a+ l+
  MMETSP1061-20121228|10835_1 326 QDLNLPFSEARLAVVGAGTMTRLLVTHLASRgLEKITIVNRSMQRPQELAEQFPDVDIEIKLMDDLWDVVGrSDIVYTATS-SVDYVIDQQKMEANGLA 423
                  45666778999******************994578********************99888887677776664777777776.56666666666666665 PP

>> TIGR01809  Shik-DH-AROM: shikimate-5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.36     5e+02     227     247 ..      65      85 ..      58     113 .. 0.69
   2 !   19.1   0.0   8.8e-08   0.00012     127     180 ..     336     389 ..     322     420 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.36
    TIGR01809 227 lldaaYdpsvtplviiakaan 247
                  +l + Y++  t l +++ a  
  MMETSP1061-20121228|10835_1  65 ILAMKYQSAITSLAAVVLASS 85 
                  567777777777777765543 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 8.8e-08
    TIGR01809 127 aglviGaGGtsraavyaLasLGvkkifvinRskdklkkLvellvsefviirles 180
                  +  v+GaG  +r  v  Las G++ki+++nRs ++ ++L e ++ + + i+l  
  MMETSP1061-20121228|10835_1 336 RLAVVGAGTMTRLLVTHLASRGLEKITIVNRSMQRPQELAEQFPDVDIEIKLMD 389
                  5569****************************************9999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2771.77
//
Query:       MMETSP1061-20121228|10833_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-41  140.8   0.0    1.6e-41  140.3   0.0    1.2  1  TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family


Domain annotation for each model (and alignments):
>> TIGR03592  yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.3   0.0   3.9e-45   1.6e-41       1     190 [.     174     399 ..     174     400 .. 0.85

  Alignments for each domain:
  == domain 1    score: 140.3 bits;  conditional E-value: 3.9e-45
    TIGR03592   1 syglaIilltlvirllllplsakqiksmrkmqelqpklkeiqekykedrqklqqemmklykeegvnplaGcLPlLiQmPillaLyavllrsielr...kapflwiedlsspdptveatialla........................iyilpvlaglttflqqkls....apkpadpa............qqkimlyimpvmflfmflffpaglllYwvvsnlftilqqliin 190
                  ++g++I ++t  +r ll+pls++q ++++ +++l+p ++ei+ k+k+++++ +q + kly + + npl+GcL  L+Q+Pi+l+Ly+ + r  +l     +pflwi +l+ p + +e+ + +l                         + i+pv+++l + l+++      +     p+             +k++l+++p+++ f++l++pagl++Yw++sn+ft+ q l+++
  MMETSP1061-20121228|10833_1 174 TWGFSIAIFTAGVRSLLVPLSFQQSRTTELTKALKPYVDEINTKFKDNENRKNQLVGKLYEDADQNPLSGCLLSLLQLPIFLGLYRGV-RLLALDgklDEPFLWIPSLQGPVT-AETDFRGLDwltqgwteidglwtpslgwettlaFCIMPVVLVLGQKLTMEALappeQ-----PDdtmdaeakesmeRTKTVLKFLPLLIGFFSLQVPAGLTIYWFTSNFFTLSQALVVR 399
                  5**************************************************************************************9.7777633459*****999998877.777777777889999999999988888775443446666666655555555433220.....224567788888999*************************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 2120.07
//
Query:       MMETSP1061-20121228|10830_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-99  329.3   0.0    6.3e-99  329.1   0.0    1.1  1  TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase
    6.1e-36  122.0   0.4    3.3e-25   86.7   0.0    3.1  2  TIGR00978 asd_EA: aspartate-semialdehyde dehydrogenase
    2.4e-35  120.0   0.0    1.8e-32  110.6   0.0    2.1  1  TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase
    7.3e-16   56.1   0.1    7.6e-14   49.5   0.1    2.6  2  TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase
    5.2e-06   23.8   0.1    9.5e-06   22.9   0.0    1.5  1  TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase
     0.0009   16.3   0.0     0.0039   14.3   0.0    1.9  2  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I


Domain annotation for each model (and alignments):
>> TIGR01296  asd_B: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.1   0.0  9.3e-102   6.3e-99       2     338 ..      76     413 ..      75     414 .. 0.94

  Alignments for each domain:
  == domain 1    score: 329.1 bits;  conditional E-value: 9.3e-102
    TIGR01296   2 vaivGatGavGqellkvLeern.fpidklvllasersaGkkvkfkgk.eleveeaekesfegidialfsaGgsvskefapkaa..kagviviDntsafrldedvPLvvpevnaeelkeakkkgiianPnCstiqlvvvLkplkdeaklkrvvvstYqavsGaGkkgveeLknqtkavlegkekepeidalkakkfakqiafnaiplidklkedGytkeelkllfetrkilgi.edlkvsatcvrvPvftghsesvsiefekelsveevkelLkeapgvvviddpsenlyptPleavgkdevfvgrirkDl.skekglalfvvaDnlrkGaalnavqiaellik 338
                  ++ivGatGavG+e+++ Le+r   ++dkl+++ s+rsaGkkv  k+  e+e+e  + +  ++ d+ + +  g  s + a  ++   +g++viDn+safr ++d+PLvvpe+n +  k+ k   +ianPnC+t   +++L pl +++++krv++stYqa sGaG+ g++eL++ tk  leg  k+   d ++ k fa+++ fn+ip+idk+ e+Gytkee+k+++etrki +  ed+++s  +vr+P +++hse + +e+ +++++e ++++L+eapgvvv ddp+  +yp+Pl+a+g+ +v vgrir+ l + ++g++ fv +D+l++Gaalnav +ae + k
  MMETSP1061-20121228|10830_1  76 IGIVGATGAVGKEIRNCLEDRGvLKVDKLRFFGSARSAGKKVPTKNSgEVEIELFDVAAARECDVVFLAVDGDFSLAHAKAISegDDGAVVIDNSSAFRYEPDIPLVVPEINGQCTKDSK---LIANPNCTTAIGLMALWPLIKQFGVKRVLMSTYQASSGAGQPGMDELTDGTKKYLEGDMKS--HDGIENKIFAYPLPFNVIPQIDKFLENGYTKEEMKVTWETRKICDLgEDIPISCSAVRIPTIRAHSEVIVLETTEKVDLELARKVLEEAPGVVVKDDPETLTYPMPLTATGSYDVEVGRIRESLaFGDHGIEFFVCGDQLLRGAALNAVLVAEEMDK 413
                  89*******************6379*****************9987549***********************9998887766522689*****************************999...**********99*******************************************998777..478999*************************************76439***************************************************************************615689************************9877 PP

>> TIGR00978  asd_EA: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   4.9e-28   3.3e-25       3     187 ..      76     242 ..      74     255 .. 0.84
   2 !   31.4   0.1   3.3e-11   2.2e-08     192     340 ..     272     411 ..     259     413 .. 0.76

  Alignments for each domain:
  == domain 1    score: 86.7 bits;  conditional E-value: 4.9e-28
    TIGR00978   3 vavLGatGlvGqklvkllekhpyfelakv..vaserkaGkkygevvkwilsgdipeevrdleiketepaaeekdvdlvfsalpsevaeevEkklae..eGlevfsnasalRldpdvplivpEvnsdhlellkvqkergwkGvivtnpnCstailtlalkPlidaasikkvivatlqavsGAGypGvssl 187
                  ++++GatG vG+++ + le    +++ k+    s r+aGkk      ++ sg       ++ei+  + a  +++ d+vf a++ + +    k++ e  +G +v+ n+sa+R++pd+pl+vpE+n +  +          + ++++npnC+tai  +al Pli+++++k+v ++t qa sGAG pG+  l
  MMETSP1061-20121228|10830_1  76 IGIVGATGAVGKEIRNCLEDRGVLKVDKLrfFGSARSAGKKVP----TKNSG-------EVEIELFDVA-AARECDVVFLAVDGDFSLAHAKAISEgdDGAVVIDNSSAFRYEPDIPLVVPEINGQCTK----------DSKLIANPNCTTAIGLMALWPLIKQFGVKRVLMSTYQASSGAGQPGMDEL 242
                  899***********************9974468******9853....33233.......3455555533.44679********99876666666543379************************96532..........4579******************************************9765 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 3.3e-11
    TIGR00978 192 nviPyik........gEEekiekEtkkilGkleegkvepaelevsatttRvPvleGHtesvfveldkkldieeirealkefkklpqklglpsaPekpivlldeedrPqprldldaekgmavtvGrlreese....slklvvlghnlvRGAAGaallnaEll 340
                  nviP i+        +EE k+  Et+ki    e       ++ +s ++ R+P+   H e++ +e+ +k+d+e +r+ l+e  +               v++d+++     + l+a +   v+vGr+re+ +     +++ v g+ l+RGAA  a+l aE +
  MMETSP1061-20121228|10830_1 272 NVIPQIDkflengytKEEMKVTWETRKICDLGE-------DIPISCSAVRIPTIRAHSEVIVLETTEKVDLELARKVLEEAPGV--------------VVKDDPETLTYPMPLTATGSYDVEVGRIRESLAfgdhGIEFFVCGDQLLRGAALNAVLVAEEM 411
                  777776511111111577777777777764333.......58899999***********************9999888877666..............344444444444557778899********997766779********************99977 PP

>> TIGR01745  asd_gamma: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   2.6e-35   1.8e-32       2     355 ..      75     401 ..      74     407 .. 0.85

  Alignments for each domain:
  == domain 1    score: 110.6 bits;  conditional E-value: 2.6e-35
    TIGR01745   2 kvglvgwrgmvgsvllkrmqeekdfdaikpv.ff.stsqlgqkapslakisailedaydidalkeldiiitcqggdytkeiypklrkagwkgywidaasslrmkddaviildpvnldvikdavnkgirtfvggnctvslllmslgglfrdelvewvsvatyqaasgggarhmrellkqmgvlykeveeelakpssaileierkvtklsrseelpvenfsvplagslipwidkqldngqsreewkgqaetnkilgtkdtilvdglcvrigalrchsqaltiklkkdvsleeieeiirahnkwvkvvpnereitlreltpaavtgtldipvgrlrk.lnmgkeylsaftvgdqllwgaa 355
                  ++g+vg  g vg  +     e++   +++ + ff s+  +g+k p+ ++ +  + + +d+ a +e+d++     gd++      + +       id +s++r + d  +++  +n +  kd+     + +   nct+++ lm+l  l+++  v+ v ++tyqa+sg+g   m el ++               ++  le + k         +  + f+ pl  ++ip idk l+ng ++ee k   et ki +  + i++    vri ++r hs  +++     v le   +++ +      vv ++   tl    p + tg+ d+ vgr+r  l +g++ +  f+ gdqll gaa
  MMETSP1061-20121228|10830_1  75 TIGIVGATGAVGKEIR-NCLEDRGVLKVDKLrFFgSARSAGKKVPTKNSGEVEI-ELFDVAAARECDVVFLAVDGDFSLAHAKAISEGDDGAVVIDNSSAFRYEPDIPLVVPEINGQCTKDS-----KLIANPNCTTAIGLMALWPLIKQFGVKRVLMSTYQASSGAGQPGMDELTDG---------------TKKYLEGDMKSHD-----GIENKIFAYPLPFNVIPQIDKFLENGYTKEEMKVTWETRKICDLGEDIPISCSAVRIPTIRAHSEVIVLETTEKVDLELARKVLEEAP---GVVVKDDPETLTYPMPLTATGSYDVEVGRIREsLAFGDHGIEFFVCGDQLLRGAA 401
                  589*********9765.5567777766665426635667899999877766655.68********************987655555554555789********************9999997.....667789***********************************9999877654...............4444555544333.....334567999*********************************************************************9999997654...466778888999999***************9659********************8 PP

>> TIGR01850  argC: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.1   1.1e-16   7.6e-14       2     186 ..      75     237 ..      74     247 .. 0.84
   2 ?   -2.0   0.0      0.49   3.3e+02     307     323 ..     389     405 ..     303     407 .. 0.52

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 1.1e-16
    TIGR01850   2 kvaivGasGYtGaeLlrllakHpevevtk...lvssreagkklsevhphlkglvdlkleeleeeeileeadvvflAlphgvsaelvpelle..kgvkvidlSadfRlkdaevYekwYgkkhekeelleeavYGlpElnreeikkaklianPGCyaTaalLalaPllkekliepksiivdaksGvSgAGrk 186
                  +++ivGa+G  G+e+ + l++   ++v k   + s r+agkk+ + +   +g+v+ +l   +++ +++e+dvvflA++  +s + ++++ e   g++vid S++fR +                     +   +pE+n +  k++klianP C +   l+al Pl+k+  +++  +++    ++SgAG+ 
  MMETSP1061-20121228|10830_1  75 TIGIVGATGAVGKEIRNCLEDRGVLKVDKlrfFGSARSAGKKVPTKN---SGEVEIELF--DVA-AARECDVVFLAVDGDFSLAHAKAISEgdDGAVVIDNSSAFRYEPD-------------------IPLVVPEINGQCTKDSKLIANPNCTTAIGLMALWPLIKQFGVKR--VLMSTYQASSGAGQP 237
                  689*******************9999887443445555999988666...566654444..444.3579******************99997677***********9944...................67789*******************9999999******9997775..899**********85 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.49
    TIGR01850 307 vvsaiDNLvKGaagqAv 323
                   +   D L++Gaa +Av
  MMETSP1061-20121228|10830_1 389 FFVCGDQLLRGAALNAV 405
                  33444666666666665 PP

>> TIGR01851  argC_other: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.0   1.4e-08   9.5e-06      50     151 ..     138     238 ..      74     280 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 1.4e-08
    TIGR01851  50 advailclpdd...aareavslvdnpntkildastayrtaedwvyGfpelaaeqrekianakrvanPGcyatgaiallrPlveaGilPadfPvtinavsGysGGG 151
                   dv++l +  d   a  +a+s  d+  ++++d s+a+r ++d    +pe++  q    +++k +anP c ++  ++ l Pl+++  +   +  t++a sG    G
  MMETSP1061-20121228|10830_1 138 CDVVFLAVDGDfslAHAKAISEGDDG-AVVIDNSSAFRYEPDIPLVVPEING-QC--TKDSKLIANPNCTTAIGLMALWPLIKQFGVKRVLMSTYQASSGAGQPG 238
                  58888888766222444566655544.6789*******************86.44..469*********9999999999***99877777777888877765544 PP

>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   5.7e-06    0.0039     125     194 ..     174     242 ..     114     251 .. 0.75
   2 ?   -0.8   0.0      0.21   1.5e+02     231     268 ..     308     345 ..     299     353 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 5.7e-06
    TIGR01534 125 skdeaaitlVygvNeeeldeseekiiSaASCTTnclapllkvleeefgiksglmtTvHayT.adQkllDav 194
                    + +++ +V  +N ++ +  ++k+i++  CTT      l +l ++fg+k+ lm+T  a   a Q  +D+ 
  MMETSP1061-20121228|10830_1 174 RYEPDIPLVVPEINGQCTK--DSKLIANPNCTTAIGLMALWPLIKQFGVKRVLMSTYQASSgAGQPGMDEL 242
                  44456788999****9998..69**********988888999**************887651456666665 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.21
    TIGR01534 231 ltgeavRvPtpdvSlvdlvlnlekevtkeevnaalkea 268
                  ++ +avR+Pt  +    +vl+++++v+ e   ++l+ea
  MMETSP1061-20121228|10830_1 308 ISCSAVRIPTIRAHSEVIVLETTEKVDLELARKVLEEA 345
                  56789*****9999888999999998887777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1414.65
//
Query:       MMETSP1061-20121228|10842_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1503.53
//
Query:       MMETSP1061-20121228|10859_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 955.60
//
Query:       MMETSP1061-20121228|10871_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1315.18
//
Query:       MMETSP1061-20121228|10877_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1566.65
//
Query:       MMETSP1061-20121228|10891_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2565.87
//
Query:       MMETSP1061-20121228|10894_1  [L=1235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-17   59.2   0.0    5.6e-17   58.7   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      1e-05   22.9   0.0    2.4e-05   21.7   0.0    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   2.7e-20   5.6e-17      22     187 ..     773     931 ..     752     980 .. 0.79

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 2.7e-20
    TIGR03903  22 vaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLa...adGa....LpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkr 187
                      r+ei++ ++L+h +iv L+ s e +d  +     +v+   l +++     +G     Lp  +     l ++D+l   h++G+++RDLkP+n+++ a++      ++DFG +   p+              +lG+P+Y aPe + +      +D++a+G+ v e +tG++
  MMETSP1061-20121228|10894_1 773 AVNIRKEIEVMQQLRHSQIVDLVTSYEDDD-HIHMLMRLVPHGELWDRIHvedDQGNwssgLPEDHAKFYALSIVDTLNFMHSRGIIYRDLKPENVLIDAQGY---PVIVDFGFAKFCPDKLY----------TFLGTPNYVAPEIITNAGHNRCADFWAFGVTVYEMITGEN 931
                  45689******************9988655.99********99999988622245652233666677777899*************************87775...689**********9765..........58************************************96 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.2e-08   2.4e-05      46     138 ..     778     885 ..     773     909 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.2e-08
    TIGR03724  46 kEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel..............ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                  kE+ ++++++++ +   v    d+++ +++m  +   +l d ++ + +               ++ ++ ++++ +H+ gi++ Dl ++N+++  ++  +++DfG +k+
  MMETSP1061-20121228|10894_1 778 KEIEVMQQLRHSQIVDLVTSYEDDDHIHMLMRLVPHGELWDRIHVEDDqgnwssglpedhakFYALSIVDTLNFMHSRGIIYRDLKPENVLIdAQGYPVIVDFGFAKF 885
                  6666666666666555555555555666666666666666666655445666666666555455667889999*******************4467789******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.15s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 3975.77
//
Query:       MMETSP1061-20121228|10923_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 1442.10
//
Query:       MMETSP1061-20121228|10925_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-15   53.1   0.0    2.6e-13   47.8   0.0    2.2  2  TIGR02923 AhaC: ATP synthase A1, C subunit


Domain annotation for each model (and alignments):
>> TIGR02923  AhaC: ATP synthase A1, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   6.3e-17   2.6e-13       7     217 ..      22     246 ..      17     255 .. 0.76
   2 !    3.0   0.0    0.0026        11     305     331 ..     334     360 ..     314     374 .. 0.76

  Alignments for each domain:
  == domain 1    score: 47.8 bits;  conditional E-value: 6.3e-17
    TIGR02923   7 YvvaRvramksrLlkeekfrellemegldeivrfleeteYkkeldelgskyegvelvekALdanLAktyekllrispgalrdliraylkkfDvrNiktliraklanlsaeevedllieaGevsekklkeL....aeaksieEiv.eaLegTeyegvlsealaeyee...s........gklstlEneLdkvyyeeLlkavgspsdkekklfaefiklevDikNlkti 217
                  ++ a vr m+s+ l+++++++l++ e+l+++   l et+Y++ + ++  +   + +++kA   +L   ++ l   + + l  ++  +  ++ + Ni  l+++ l++ + +e+  +  ++G +++++++ +      ak + ++  + L +T+  + +s++l+e  +   s         ++  + ++L k + e+ ++      ++  +++ + +k++ D + + ++
  MMETSP1061-20121228|10925_1  22 FAEALVRGMRSSFLSDQDYNHLIQCETLEDVRLNLTETDYADAIADF--NTLTPAMLQKAAVDKLVSEFKYLRTQTVEPLSTFLDFITYEYMIENIMLLLKGALSGRDINELLAQCHPLGMFKDSTMRSIptfeNSAKGYSDLYtTVLVDTPVGPYFSKFLQENAQhrgSssrnvleeVEIEIIKSSLIKFWIEDFYQFCSTLGGDTGEIMCDILKVRADTNAINIT 246
                  67899******************************************..8899***********************************************************************9999873322235556665414577777777777777654321111111000002223333455566666666666555566666666666666666655555 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0026
    TIGR02923 305 rkPlsvvpvlsyilkKevEvknlrvia 331
                  ++ +  +   +y+  Ke+Ev+nl  i+
  MMETSP1061-20121228|10925_1 334 ENQFHFGCFYAYVKLKEQEVRNLVWIT 360
                  55666777889***********97776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1756.82
//
Query:       MMETSP1061-20121228|10958_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 547.51
//
Query:       MMETSP1061-20121228|10960_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.8e-277  918.3  15.8   4.7e-277  918.0  11.0    1.1  1  TIGR02350 prok_dnaK: chaperone protein DnaK
   9.8e-186  616.6   9.6   1.2e-185  616.3   6.7    1.0  1  TIGR01991 HscA: Fe-S protein assembly chaperone HscA
    3.1e-13   47.3   1.8    1.7e-10   38.3   1.3    2.4  1  TIGR00904 mreB: cell shape determining protein, MreB/Mrl family
    4.4e-12   43.8   7.9    2.8e-10   37.9   0.7    3.2  4  TIGR02529 EutJ: ethanolamine utilization protein EutJ family protein
    7.1e-05   19.9   9.4    0.00017   18.6   0.0    3.5  4  TIGR01174 ftsA: cell division protein FtsA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  918.0  11.0  5.7e-280  4.7e-277       2     595 ..      44     644 ..      43     645 .. 0.97

  Alignments for each domain:
  == domain 1    score: 918.0 bits;  conditional E-value: 5.7e-280
    TIGR02350   2 iiGidLGttnsvvavleggepvvianaeGarttPsvvafkk....dgerlvGelakrqavtnpentivsikrliGrkle..eveeeakkvpykvveaen..evkv.evedkeytpeeisaeiLqklkkdaeaylGekvteavitvPayfndaqrqatkdaGkiaGlevlriinePtaaaLayGldkekkdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvgkepnksvnPdevvaiGaaiqggvlkgevkdvlLldvtPLsLgietlGgvltkliernttiPtkksqvfstaednqpaveihvlqGerelaadnkslgrfeLtgippaPrGvpqievtfdidanGilsvsakdkatgkeqsititassglseeeiermvkeaeanaeedkkkkeevearneadsliyqaektlkeagdkleeeekekiekaveelkealkeedveekikakteelekaleklaealy 595
                  +iGidLGttns+v+++eg  ++vi+n+eGarttPsvvaf +    + erlvG +akrqavtnpent++++krliGr+++  ev++ +  vpy++v++++  +++v ++++ +y+p +i++++L k+k++ae +lG++v++av+tvPayfnd+qrqatkdaGkiaGl+vlriinePtaa+LayG+dk  + ++i+vfdlGGGtfdvs+le+++gvfevk+t+Gdt+LGG+dfde+++ +l+ efkk++gidL  d+ a+qrl+eaaekak eL + ++t+++lpfitada+gpkh++ k++ra+fe++v++lv+r++ep+k+ +kda++ +s+i+e+ilvGG+tr+P+vqe+v++++gk+p+++vnPdevva+Gaaiqggvlkg+vkd+lLldvtPLsLgietlGgv+tkli rnttiPtkk+q+fsta+dnqp v+i+v+qGere+aadnkslg+f+L gippaPrGvpqiev+fdida+Gil+vsakdk+tgkeq+i i++s+glsee+ie+mv++ae+nae+d k+++ +e +ne dsliy++ek++ ++gdkl++e+k+++ekav+e+ke+ ++ed++  i++k+e+l++a+ k+++a+y
  MMETSP1061-20121228|10960_1  44 VIGIDLGTTNSCVSIMEGRTARVIENSEGARTTPSVVAFVHgdgsEPERLVGMAAKRQAVTNPENTMYAVKRLIGRSYNdaEVKTIQGLVPYQIVKSDHndDAWVaDTKGTKYSPSQIGSMVLGKMKETAEGFLGRTVSKAVVTVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAASLAYGMDK-ADGKTIVVFDLGGGTFDVSVLEIQGGVFEVKATNGDTMLGGEDFDEELLSHLLGEFKKDSGIDLGGDNLAMQRLREAAEKAKRELDGLAQTDVSLPFITADATGPKHMNSKISRAQFENMVQPLVDRSIEPCKACIKDADVDKSDIHEIILVGGMTRMPKVQETVEQFFGKKPSRGVNPDEVVAMGAAIQGGVLKGDVKDILLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKQQTFSTAADNQPQVQIKVMQGEREMAADNKSLGEFDLVGIPPAPRGVPQIEVSFDIDADGILNVSAKDKGTGKEQNIVIKSSGGLSEEDIEQMVRDAESNAENDAKRRQLIESKNEIDSLIYSTEKSVVDNGDKLDAETKAEVEKAVAEAKEVKDGEDLDL-INSKKEALNQASMKIGQAMY 644
                  8**************************************752222569******************************96667777889******987645555526889****************************************************************************.7799****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************977.*****************998 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  616.3   6.7  1.5e-188  1.2e-185       1     580 [.      44     639 ..      44     651 .. 0.93

  Alignments for each domain:
  == domain 1    score: 616.3 bits;  conditional E-value: 1.5e-188
    TIGR01991   1 avGiDlGttnslvaavregkaevlkdeegrvllpsvvryleeg....kvevGkeakeaaaedpkntiisvkRlmGrsled..vkkeaeelpyeledak..gemvrlktaqgevtPvevsaeiLkklkkraeealgkelkgavitvPAYFddaqrqatkdAarlaglnvlRLlnePtaAAvAYGldkaseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklil....kkagleaelskeekkellkaaraakeaLtdaeevevevkl......egkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepltdldPdevvAlGAalqadlLaknkrkedllLlDviPLsLGletmGGlvekiipRnttiPvakaqeFttykDgqtalaihvvqGeRelvedcrsLarFeLrgippmaAGaarirvtfqvDadGllsvsaqekltgveakievkpsygLsdeeiekmlkdslknaeeDmeaRalaekkveaerilealekalkadkdLlseeelkaikaaleklekaleeddaeaikaaiealeeaskef 580
                  ++GiDlGttns v+ ++  +a+v++++eg  + psvv + + +    +  vG +ak++a+++p+nt+ +vkRl+Grs +d  vk+ +   py++++++  ++    +t+  + +P ++ + +L k+k+ ae  lg+ +++av+tvPAYF+d qrqatkdA+++agl+vlR++nePtaA +AYG+dka  ++++v+DLGGGtFDvs+L ++ GvFev+at Gd+ LGG+DfD+ l +++l    k++g++   ++  ++ l +aa++ak++L   ++++v++          k+++ k+sr+++e+++++lv++++e++++ ++da++++++i+e++lvGG tr+p+v+++v+++F+k+p   ++PdevvA+GAa+q  +L ++ +  d+lLlDv+PLsLG+et+GG++ k+ipRnttiP++k+q F t  D+q  ++i+v+qGeRe+++d++sL+ F+L gipp + G+ +i+v f++DadG+l+vsa++k tg+e++i +k s gLs+e+ie+m++d+ +nae+D+++R+l e+k e + ++ ++ek++ +++d l++e ++++++a+++++++ +++d + i+++ eal++as ++
  MMETSP1061-20121228|10960_1  44 VIGIDLGTTNSCVSIMEGRTARVIENSEGARTTPSVVAFVHGDgsepERLVGMAAKRQAVTNPENTMYAVKRLIGRSYNDaeVKTIQGLVPYQIVKSDhnDDAWVADTKGTKYSPSQIGSMVLGKMKETAEGFLGRTVSKAVVTVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAASLAYGMDKADGKTIVVFDLGGGTFDVSVLEIQGGVFEVKATNGDTMLGGEDFDEELLSHLLgefkKDSGIDLGGDNLAMQRLREAAEKAKRELDGLAQTDVSLPFitadatGPKHMNSKISRAQFENMVQPLVDRSIEPCKACIKDADVDKSDIHEIILVGGMTRMPKVQETVEQFFGKKPSRGVNPDEVVAMGAAIQGGVLKGDVK--DILLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKQQTFSTAADNQPQVQIKVMQGEREMAADNKSLGEFDLVGIPPAPRGVPQIEVSFDIDADGILNVSAKDKGTGKEQNIVIKSSGGLSEEDIEQMVRDAESNAENDAKRRQLIESKNEIDSLIYSTEKSVVDNGDKLDAETKAEVEKAVAEAKEVKDGEDLDLINSKKEALNQASMKI 639
                  59*************************************87541222567***************************9873356777889****7654104456666777799***************************************************************************************************************************999777777888888899999999999********9988887765332222123478999************************************************************************************97765..59***********************************************************************************************************************************************************************************************************999765 PP

>> TIGR00904  mreB: cell shape determining protein, MreB/Mrl family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   1.3   2.1e-13   1.7e-10      96     320 ..     176     414 ..      41     423 .. 0.68

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 2.1e-13
    TIGR00904  96 llkpk...vlicvPsgiteverravkesaksaGarevylieeplaaaiGadlPveeptgsmvvdiGGGttevavislgGiv.vsks....irvaGdeldeaiikyirrkynl.....liGerta.ekikieiGsayaeendeeeklevk....GrdlvtG.lprtleldskevlealkepvseiveavkstlektpPelaadiverGivltGGGallknldkllsketklpvivaedpllaval 320
                  +l ++    +++vP+   + +r+a k++ k aG     +i+ep aa++  ++   + ++ +v d+GGGt +v+v+ ++G v   k+      ++G+++de +++++  +++      l G++ a ++++     a+ e  d   + +v+      d +tG    + +++  +  + ++  v++ +e  k  +++++ +  +di e  i+l GG + +  +++++++  + +   + +p + va+
  MMETSP1061-20121228|10960_1 176 FLGRTvskAVVTVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAASLAYGMDKADGKTIVVFDLGGGTFDVSVLEIQGGVfEVKAtngdTMLGGEDFDEELLSHLLGEFKKdsgidLGGDNLAmQRLREAAEKAKRE-LDGLAQTDVSlpfiTAD-ATGpKHMNSKISRAQFENMVQPLVDRSIEPCKACIKDADVDK-SDIHE--IILVGGMTRMPKVQETVEQFFGKKPSRGVNPDEVVAM 414
                  5554434489******************************************************************987652444411225689*******9999876665311112334444412333333333333.33444444441111223.333022334555555555555556666666666666665554.45654..6666766666666666666555555555555555555 PP

>> TIGR02529  EutJ: ethanolamine utilization protein EutJ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       1.8   1.5e+03       1      15 [.      46      60 ..      46      72 .. 0.77
   2 !   37.9   0.7   3.5e-13   2.8e-10      44     134 ..     164     259 ..     159     270 .. 0.85
   3 !    8.5   0.0   0.00033      0.27     173     237 ..     348     417 ..     322     419 .. 0.70
   4 ?   -1.3   0.1      0.33   2.7e+02     128     170 ..     523     565 ..     517     580 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.8
    TIGR02529  1 GvdlGtanivivvld 15
                 G+dlGt+n  + +++
  MMETSP1061-20121228|10960_1 46 GIDLGTTNSCVSIME 60
                 789999998887775 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 3.5e-13
    TIGR02529  44 eivkrlkdklekklGieltkaaiavPPGveegdkkvivnvvesaGlevlkvldePtaaaavlqlkng.....avvdvGGGttGisilkkGkviysa 134
                   ++ ++k+++e  lG++++ka ++vP   ++++ +++ +    aGl+vl++++ePtaa+ +  ++++     +v d+GGGt  +s+l+    ++  
  MMETSP1061-20121228|10960_1 164 MVLGKMKETAEGFLGRTVSKAVVTVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAASLAYGMDKAdgktiVVFDLGGGTFDVSVLEIQGGVFEV 259
                  577899****************************************************99998876444555788************965555554 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.00033
    TIGR02529 173 svvkPvvekmaeivkkh.....iekqkvkdlylvGGassfsefedvfekelglevikpaepllvtPlgia 237
                  ++v+P+v++  e  k       ++k++++++ lvGG + ++++++++e+ +g++  +  +p  v  +g a
  MMETSP1061-20121228|10960_1 348 NMVQPLVDRSIEPCKACikdadVDKSDIHEIILVGGMTRMPKVQETVEQFFGKKPSRGVNPDEVVAMGAA 417
                  467777777655444440000056677889*******************999988888877777666655 PP

  == domain 4    score: -1.3 bits;  conditional E-value: 0.33
    TIGR02529 128 GkviysadeatGGthlslvlaGaykisleeaeekkkekkkeee 170
                  G +  sa +   G++ ++v+  + ++s e+ e++ ++ ++++e
  MMETSP1061-20121228|10960_1 523 GILNVSAKDKGTGKEQNIVIKSSGGLSEEDIEQMVRDAESNAE 565
                  55566777777888999*****************999777665 PP

>> TIGR01174  ftsA: cell division protein FtsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1      0.38   3.1e+02       2      18 ..      44      60 ..      43      68 .. 0.80
   2 !    4.6   0.0    0.0037       3.1     164     212 ..     201     249 ..     177     259 .. 0.87
   3 !   18.6   0.0   2.1e-07   0.00017     244     354 ..     305     415 ..     291     421 .. 0.82
   4 ?   -0.9   1.1      0.17   1.4e+02      51     117 ..     551     622 ..     524     628 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.38
    TIGR01174  2 ivgldiGtskivaivae 18
                 ++g+d+Gt++ ++ + e
  MMETSP1061-20121228|10960_1 44 VIGIDLGTTNSCVSIME 60
                 79********9997766 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0037
    TIGR01174 164 ekaveraglevdnivlsslAsakavLtedEkelGvvlidiGggttdiav 212
                  ++a + agl+v +i+ ++ A++ a   +      +v+ d+Gggt d++v
  MMETSP1061-20121228|10960_1 201 KDAGKIAGLDVLRIINEPTAASLAYGMDKADGKTIVVFDLGGGTFDVSV 249
                  55667799****************99988888999***********998 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 2.1e-07
    TIGR01174 244 eeAEkiKikygsalieleseeesveipsvg.ereerelskkelaeiieaRveEileivkqkelkksgl.keelaagivltGGaaqlkgikelaekvfdkk.vrigapqnitGlt 354
                  e+AEk K +   + +    +   ++   +g ++ + ++s+++  ++++  v   +e  k + +k++ + k+++ + i+l GG++++  ++e  e+ f kk +r   p++++ + 
  MMETSP1061-20121228|10960_1 305 EAAEKAKRELDGLAQTD-VSLPFITADATGpKHMNSKISRAQFENMVQPLVDRSIEPCK-ACIKDADVdKSDIHE-IILVGGMTRMPKVQETVEQFFGKKpSRGVNPDEVVAMG 415
                  67788887764444433.33357778888889999***********************8.999**9995666666.*********************99979988899998776 PP

  == domain 4    score: -0.9 bits;  conditional E-value: 0.17
    TIGR01174  51 ksikeaieeaelmagleirevvvslsgahiksqnskgvvaikdk.....evtqediervleaakavalpedk 117
                  + i++ +++ae+ a+ ++++  +  s ++i+s   ++  ++ d+       t+ ++e+++++ak v+  ed 
  MMETSP1061-20121228|10960_1 551 EDIEQMVRDAESNAENDAKRRQLIESKNEIDSLIYSTEKSVVDNgdkldAETKAEVEKAVAEAKEVKDGEDL 622
                  568889999999999999988888888888886555444444444448766788999999999988766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.32
# Mc/sec: 2804.77
//
Query:       MMETSP1061-20121228|10980_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1893.54
//
Query:       MMETSP1061-20121228|10992_1  [L=31]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (31 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.13s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 215.35
//
Query:       MMETSP1061-20121228|10993_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       337  (0.082155); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.48
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|10997_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.40
# Mc/sec: 178.19
//
Query:       MMETSP1061-20121228|11010_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.94    6.9  12.9       0.14    9.6   6.6    1.3  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
        6.9    4.6   9.1         71    1.3   6.3    2.3  1  TIGR02808 short_TIGR02808: TIGR02808 family protein


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   6.6   6.9e-05      0.14      56      77 ..       3      24 ..       1      29 [. 0.74

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 6.9e-05
    TIGR03789 56 vVgGPvGaiiggitGgligqav 77
                  VgG vG+++gg++Gg++g av
  MMETSP1061-20121228|11010_1  3 FVGGFVGGFVGGFVGGFVGVAV 24
                 5788888888888888888766 PP

>> TIGR02808  short_TIGR02808: TIGR02808 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   6.3     0.035        71      21      31 ..      15      25 ..       2      29 .. 0.93

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.035
    TIGR02808 21 iLaGFvaVaVv 31
                 + +GFv+VaV+
  MMETSP1061-20121228|11010_1 15 FVGGFVGVAVM 25
                 789*******7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 232.12
//
Query:       MMETSP1061-20121228|11035_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   14.7   0.0     0.0042   14.0   0.0    1.2  1  TIGR00541 hisDCase_pyru: histidine decarboxylase, pyruvoyl type
     0.0086   13.7   0.1      0.013   13.0   0.1    1.3  1  TIGR00960 3a0501s02: type II secretory pathway family protein


Domain annotation for each model (and alignments):
>> TIGR00541  hisDCase_pyru: histidine decarboxylase, pyruvoyl type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0     2e-06    0.0042     136     210 ..      10      88 ..       3      98 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2e-06
    TIGR00541 136 ekdrrfttapgafvvcanksvtaerp...kedadlkegeaygvw.saialslakdrdkdadlfvedaglweknneeelk 210
                   ++rrf + p + vv  +k+    r    ke  +     +y v  +ai+ sl++d++ + +l + +  + + +  eelk
  MMETSP1061-20121228|11035_1  10 SQKRRFSSLPSSSVVKRKKGDGIFRSssaKESMNKNAATSYPVIeTAITYSLSEDEESCNNLALPNIDVEHSKSTEELK 88 
                  578*****************998885222666666677889886379****************9999999988888887 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   6.5e-06     0.013      49     125 ..     145     222 ..     131     234 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 6.5e-06
    TIGR00960  49 ilgiekpsaGkirvsgqdltklrd.revpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalek 125
                  i+  e +   +i  ++ +++ l+   ev +lr+  G+  +d+++l  ++v+ ++ lal     k + +e++ s+++e 
  MMETSP1061-20121228|11035_1 145 IMRNELAHLMQIAEKDREISALKTaAEVMKLRHAQGMESKDNEILRINNVVTELELALSATEEKLDSMEQVHSKTIEA 222
                  677788888889999999*99986369********************************9999999999998888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       294  (0.0716724); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 894.59
//
Query:       MMETSP1061-20121228|11080_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   12.1   3.6      0.075   10.7   2.3    1.8  2  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.057   2.3e+02     176     186 ..      57      68 ..      55      78 .. 0.77
   2 ?   10.7   2.3   1.8e-05     0.075     154     228 ..      77     145 ..      64     147 .] 0.71

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.057
    TIGR03296 176 H.dlglPDlYdt 186
                  H ++++PD Y  
  MMETSP1061-20121228|11080_1  57 HvLFCWPDGYAF 68 
                  9899******86 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 1.8e-05
    TIGR03296 154 lvgdytiqpedagvgVlaHElGHdlglPDlYdtsydgggetpvGdWs.lMssGswagkgstppdmkawlkeklgWl 228
                  +   y + +e + + +l HE+GH+lgl +       g++e   Gd s  M++G  +g+    + +++ + ++lgW 
  MMETSP1061-20121228|11080_1  77 WYSVYPH-GECSNLSTLMHEIGHNLGLSHSSL----GNQE--YGDLSgYMGAGLSGGDDVPLMCFNPVKNWQLGWY 145
                  4444444.4555599************98766....3333..4444327999999999777777888888999996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 843.58
//
Query:       MMETSP1061-20121228|11071_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 935.92
//
Query:       MMETSP1061-20121228|11101_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 2326.92
//
Query:       MMETSP1061-20121228|11102_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 1344.64
//
Query:       MMETSP1061-20121228|11141_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 895.23
//
Query:       MMETSP1061-20121228|11152_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.0   0.1      0.017   12.9   0.1    1.1  1  TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein


Domain annotation for each model (and alignments):
>> TIGR02953  penta_MxKDx: pentapeptide MXKDX repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.1e-06     0.017      33      58 ..      23      48 ..      10      53 .] 0.51

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.1e-06
    TIGR02953 33 mkkDaMkkdamakdaMskDamkkdam 58
                  ++D+ ++d++++d+ s D  ++d+ 
  MMETSP1061-20121228|11152_1 23 TSEDSVSEDSVSEDSVSEDSVSEDSG 48
                 33455555555555555555554443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|11149_1  [L=903]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (903 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.39
# Mc/sec: 3056.06
//
Query:       MMETSP1061-20121228|11174_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-34  117.7   0.0    3.6e-34  116.0   0.0    1.7  1  TIGR04181 NHT_00031: aminotransferase, LLPSF_NHT_00031 family
    1.8e-33  113.8   0.0    2.5e-33  113.3   0.0    1.1  1  TIGR03588 PseC: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
    1.7e-14   51.2   0.0    2.3e-14   50.8   0.0    1.2  1  TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase
    3.3e-07   27.2   0.1    4.9e-07   26.6   0.1    1.2  1  TIGR00858 bioF: 8-amino-7-oxononanoate synthase
    4.8e-07   26.8   0.1    6.6e-07   26.4   0.0    1.2  1  TIGR01822 2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
    1.1e-06   25.4   0.2    1.7e-06   24.8   0.2    1.2  1  TIGR01825 gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase
      2e-05   21.6   0.0    2.8e-05   21.1   0.0    1.2  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
    6.2e-05   20.3   0.1    0.00018   18.8   0.1    1.8  1  TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
    9.8e-05   19.2   0.0    0.00014   18.7   0.0    1.1  1  TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase
  ------ inclusion threshold ------
      0.032   11.2   0.0      0.048   10.6   0.0    1.2  1  TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
       0.04   10.2   0.3       0.06    9.6   0.2    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR04181  NHT_00031: aminotransferase, LLPSF_NHT_00031 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.0   9.7e-37   3.6e-34      32     277 ..      77     318 ..      73     330 .. 0.88

  Alignments for each domain:
  == domain 1    score: 116.0 bits;  conditional E-value: 9.7e-37
    TIGR04181  32 vdefEeklaeytgakkavavvnGtaaLhlalkllgvkegdeVivpaltFvAtanaisylgaePvfvdvdeetlgldpealeefleeeaekkegklinketgrrikavvpvHvfGnpadleeileiakeynlklvEDaaesLGslykgkhtGtfgklgvlSFNgNKiiTtggGGaivtndeelakrakh.......lsttAkkphelefeH....devgyNyRlpnlnAalgvaqlekleeflekKrelaeaYkellk 277
                  v+  E+++++ytg k++v +++  +aL l lk++g+k+g +V+ +a+tF A   ai++++ + v+v++d +   +d++ le+ l+e+                 k v++ H+ G+ ad++++++++++y+  l+EDaa sLG +++g+h G  g + ++S  + K+i +g GG ++t+d ++a+++         lst+  +  +le++     ++  y  R++nl A++ + q+++lee++ek  + ++   e l+
  MMETSP1061-20121228|11174_1  77 VSLCEKEICDYTGFKYCVGLNSCGSALMLLLKTTGLKPGGKVLSNAFTFGAVPSAIEHANGKAVYVESD-KDHVMDTADLEKKLKENP--------------DCKHVLISHMRGKLADMDTVKDLCDKYDAILLEDAAHSLGVFWQGEHSGHKGVACAISSQSYKMINSGEGGFLLTDDPDIAAQTATiagayegLSTKHLTVPPLEYFKglsvQHPNYSLRMSNLAASVILPQVSTLEERIEKYNRRYNYVVEKLE 318
                  66679****************************************************************.56789**********965..............5677999***********************************************************************998876542222233788888888999976333367789***********************987665555444444 PP

>> TIGR03588  PseC: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.3   0.0   6.8e-36   2.5e-33      31     280 ..      76     321 ..      72     340 .. 0.88

  Alignments for each domain:
  == domain 1    score: 113.3 bits;  conditional E-value: 6.8e-36
    TIGR03588  31 kveafEealaeavgakyavavnsaTsaLhlavlalgvkegdevlttpitFvAtancalyaGakvvfvdvdkkdgnldekalekklaaaekkkikvivpVdfaGksvdleaiaalakkhglklieDasHalGaeykgkkvGkcryaditvfSFHpvKiittaEGGavttndeelaerlkllrs..Hgitkdseklekqeeglw.yyevqelGfNyRlsdiqaALglsqlkkldefvekRreiaalYdealkela 280
                  +v+  E+ +++++g ky v +ns  saL l++   g+k+g +vl  + tF A   ++ +a  k v+v+   kd  +d+ +lekkl++++    k ++  +++Gk +d++++++l++k+ + l+eDa+H+lG   +g++ G+   + ++  S  + K+i ++EGG ++t+d+ +a++   +     g++ ++  l+ +    +    vq+  +  R+s+++a + l q++ l+e +ek ++  +   e+l++++
  MMETSP1061-20121228|11174_1  76 AVSLCEKEICDYTGFKYCVGLNSCGSALMLLLKTTGLKPGGKVLSNAFTFGAVPSAIEHANGKAVYVES-DKDHVMDTADLEKKLKENP--DCKHVLISHMRGKLADMDTVKDLCDKYDAILLEDAAHSLGVFWQGEHSGH--KGVACAISSQSYKMINSGEGGFLLTDDPDIAAQTATIAGayEGLSTKH--LTVPPLEYFkGLSVQHPNYSLRMSNLAASVILPQVSTLEERIEKYNRRYNYVVEKLESSS 321
                  57788***************************************************************9.67899***********665..78889999******************************************..9999999**************************999975225777666..434444444146899999999*********************998877666666666555 PP

>> TIGR02379  ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   6.2e-17   2.3e-14      33     205 ..      77     249 ..      47     341 .. 0.84

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 6.2e-17
    TIGR02379  33 srkceawleerlgakkalltpsctaalelaallldiqeGdevimpsytfvstanafvlrGakivfvdiredtlnidekkieaaite..rtkaivpvhyaGvacdmdtimalankyelfviedaaqGlmstykgralGsiGhlgafsfhetknytsGgeGGallindkalieraei 205
                     ce+ + + +g k ++  +sc +al l    + +++G +v+  ++tf +   a     +k v+v+  +d + +d   +e  ++e    k +   h  G   dmdt+  l++ky+ +++edaa  l   ++g   G  G  +a s    k + sG eGG ll +d ++  ++  
  MMETSP1061-20121228|11174_1  77 VSLCEKEICDYTGFKYCVGLNSCGSALMLLLKTTGLKPGGKVLSNAFTFGAVPSAIEHANGKAVYVESDKDHV-MDTADLEKKLKEnpDCKHVLISHMRGKLADMDTVKDLCDKYDAILLEDAAHSLGVFWQGEHSGHKGVACAISSQSYKMINSG-EGGFLLTDDPDIAAQTAT 249
                  4579999999999999999**********9999*********************************9988865.688888887765116899********************************************************99999999.*********999765544 PP

>> TIGR00858  bioF: 8-amino-7-oxononanoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   1.3e-09   4.9e-07      72     197 ..      81     207 ..      69     227 .. 0.69

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.3e-09
    TIGR00858  72 EeelaefkgteaallfssGylaNlgvisal.vekedlvlsDklnHAslidgarLskakvlry....kH.ndvealerlLekergerrklivtdgvFSmDGdvaplkelvalaeryealllvDdAHgtGvlGe 197
                  E+e+++++g + ++ ++s   a + ++++  ++ +  vls ++   ++  +++ ++ k +      +H +d+++le++L+++ + ++ li       m G +a+++ ++ l+++y+a+ll D AH++Gv+ +
  MMETSP1061-20121228|11174_1  81 EKEICDYTGFKYCVGLNSCGSALMLLLKTTgLKPGGKVLSNAFTFGAVPSAIEHANGKAVYVesdkDHvMDTADLEKKLKENPDCKHVLIS-----HMRGKLADMDTVKDLCDKYDAILLEDAAHSLGVFWQ 207
                  6666666666666655555555554444332455666666666666666666666555443311113535999*********966666664.....5********************************854 PP

>> TIGR01822  2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.8e-09   6.6e-07      87     216 ..      79     207 ..      52     234 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.8e-09
    TIGR01822  87 elekklaeflgtedailyascfdangGlfeal.lgeedaiisdalnhasiidGvrlckakry.....ryenadledleaklkearaagarlrliatdGvfsmdGtiapldeicalaekydalvlvdechatGflGa 216
                    ek+++++ g + ++  +sc  a   l+++  l +   ++s+a+   ++   +     k       + + +d +dle+klke  +  ++++li       m G++a++d +++l++kyda++l d +h+ G+  +
  MMETSP1061-20121228|11174_1  79 LCEKEICDYTGFKYCVGLNSCGSALMLLLKTTgLKPGGKVLSNAFTFGAVPSAIEHANGKAVyvesdKDHVMDTADLEKKLKENPD--CKHVLIS-----HMRGKLADMDTVKDLCDKYDAILLEDAAHSLGVFWQ 207
                  556666666666666666666666666555432666666777777776666666665554430111123346889*******9764..69*9997.....6*******************************8744 PP

>> TIGR01825  gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.2   4.4e-09   1.7e-06     147     208 ..     150     206 ..     116     219 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4.4e-09
    TIGR01825 147 vdmddlerklrenkekkkklivtdGvfsmdGdvaplpeivelaekydalvyvddahgsGvlG 208
                  +d +dle+kl+en++ k +li       m G++a ++ + +l +kyda+ + d ah+ Gv+ 
  MMETSP1061-20121228|11174_1 150 MDTADLEKKLKENPDCKHVLI-----SHMRGKLADMDTVKDLCDKYDAILLEDAAHSLGVFW 206
                  699*************99987.....47********************************84 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   7.6e-08   2.8e-05      71     182 ..      99     206 ..      76     266 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 7.6e-08
    TIGR01977  71 attalNialkG.ilkegkhvittslEHnaVlRpleklkeelgvevtivkaeeeglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvle 182
                     al ++lk   lk g +v++ ++   aV   +e+ + +      +v+++++ ++d+ +++k++k++++   + + S + G + +++ +  l+ +++ ++l Daa ++Gv  
  MMETSP1061-20121228|11174_1  99 CGSALMLLLKTtGLKPGGKVLSNAFTFGAVPSAIEHANGK----AVYVESDKDHVMDTADLEKKLKENPDCKHV-LISHMRGKLADMDTVKDLCDKYDAILLEDAAHSLGVFW 206
                  5667888888877999999999999999999999988777....779********************9765433.345589*****************************974 PP

>> TIGR03301  PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   4.9e-07   0.00018      97     318 ..     136     359 ..      83     373 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 4.9e-07
    TIGR03301  97 glphtalkfseeeevdlseieelLaedpdithvavvHhEtttgiLnpleaiakvarshgavlivDavSslgai..pidieeldvdalias.anKclegvpGlsFviarrdlleasagnarSlyldLydqwaym...ekegkwrftppthvv.aAlaqAleeleaeggvearlerykrnaellvdglralGlep.lleeeiqspiivsfkspddpdfdFdklyqelkergf 318
                  +   + ++ ++++ +d +++e+ L+e+pd +hv + H     g L++++ +  ++ ++ a l+ Da  slg    +    + +v+  i+s + K +++  G +F++++   ++a        y  L +++ ++   e  +     +p   + +    A   l +++ +e r+e+y+r  +++v++l++  + + l  +++  ++ + ++  d ++f+  ++++e   ++f
  MMETSP1061-20121228|11174_1 136 NGKAVYVESDKDHVMDTADLEKKLKENPDCKHVLISHM---RGKLADMDTVKDLCDKYDAILLEDAAHSLGVFwqGEHSGHKGVACAISSqSYKMINSGEG-GFLLTDDPDIAAQTATIAGAYEGLSTKHLTVpplEYFKGLSVQHPNYSLrMSNLAASVILPQVSTLEERIEKYNRRYNYVVEKLESSSVGKhLYIPQLTPGVTRMVH--DSIQFNLGEIFTEEMTQDF 359
                  556678899999*************************8...599*************************99752255566666766665524566666665.78888877777777777777777777665541113333334444433330333344445666666777777777777777777765443331222333334333333..3356666666666666666 PP

>> TIGR01821  5aminolev_synth: 5-aminolevulinic acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.7e-07   0.00014      74     222 ..      58     206 ..      45     229 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.7e-07
    TIGR01821  74 kvGaGaGGtrnisGtnkslvel.eaeladlhkkesalvfssgyvandatlatlakilpdlvifsdelnhasmieGikkskaekvifrhndvae......lekllesadkkaPkliafesvysmdGdiapikeicdladkygaltyldevhavGlyG 222
                   + +G     ni+  ++s v+l e+e+ d  + +  + + s+  a    l t + + p+  ++s++    ++ + i ++++ k ++   d ++      lek+l++++  +  l     +  m G++a+++ + dl+dky+a+   d  h++G++ 
  MMETSP1061-20121228|11174_1  58 LMQTGRLYRYNIGPGEQSAVSLcEKEICDYTGFKYCVGLNSCGSALMLLLKTTG-LKPGGKVLSNAFTFGAVPSAIEHANG-KAVYVESDKDHvmdtadLEKKLKENPDCKHVL-----ISHMRGKLADMDTVKDLCDKYDAILLEDAAHSLGVFW 206
                  555555556677655555554448888888888777777777666555555544.45888999999999999999999987.56676555555100000555555544444433.....457*******************************983 PP

>> TIGR02326  transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013     0.048     101     172 ..     136     204 ..      85     233 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
    TIGR02326 101 eipvvvveteekeatnvaevekilaadpeithvalvhsetttGilnPieavakvakryGkvlivdamssfGg 172
                  + + v ve ++++  ++a++ek l+++p+  hv + h     G l  ++ v  + ++y  +l+ da  s+G 
  MMETSP1061-20121228|11174_1 136 NGKAVYVESDKDHVMDTADLEKKLKENPDCKHVLISHM---RGKLADMDTVKDLCDKYDAILLEDAAHSLGV 204
                  555667888899999********************997...58999***********************995 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00016      0.06     360     403 ..     132     175 ..     127     194 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00016
    TIGR03319 360 lLHDiGkavdhevegsHveiGaelakkykeskevvnaiaaHHed 403
                  + H  Gkav  e ++ Hv+  a+l kk+ke+++  + + +H   
  MMETSP1061-20121228|11174_1 132 IEHANGKAVYVESDKDHVMDTADLEKKLKENPDCKHVLISHMRG 175
                  56889******************************999999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 1877.65
//
Query:       MMETSP1061-20121228|11198_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 521.01
//
Query:       MMETSP1061-20121228|11224_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.4e-14   49.6   0.1    1.1e-13   49.4   0.1    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    6.2e-11   40.4   0.0    1.3e-10   39.3   0.0    1.6  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.1   5.2e-17   1.1e-13      36     174 ..       1     136 [.       1     169 [. 0.67

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 5.2e-17
    TIGR01130  36 LaPeYekAAeelkkkspkvklakvDatee.kelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqsgPaskeletvedlekllekkevvvvgvfkd.ldselvetflevaeklrdkfkavasssdeaalkkle 174
                  ++P+++k  ++ ++++ +  +a vD+t+  k+l++++g++GyP+Lk+     + ++Y+G+R+ + + k+ ++  +P  +  ++v+  e+ ++++  + +g   + ld+ +++  +++a+++++  k v    + a+++++ 
  MMETSP1061-20121228|11224_1   1 MKPDWDKLMDAFADSE-TALVADVDCTAAgKDLCTEHGIRGYPSLKYGDPA-NLEEYSGGRDFKSLEKFATENLKPMCS-PSNVDLCEADKKADIEKFLGLAGAeLDKMIADGEKKIAQAETEFKKGVEG-LQ-AKYQEMM 136
                  6899999999998888.7889******999****************97755.79**********************984.55555555444444444444443314444455555555554444442222.22.2222222 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0   6.4e-14   1.3e-10      33     104 ..       2      71 ..       1      72 [. 0.92

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 6.4e-14
    TIGR01126  33 aPeyeklakelkkeeekvkiakvdatae.kelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefveek 104
                   P ++kl ++++++e +  +a+vd+ta  k+l+++ +++g+P lk+ +  +   ++y+G+R+ ++l++f +e+
  MMETSP1061-20121228|11224_1   2 KPDWDKLMDAFADSE-TALVADVDCTAAgKDLCTEHGIRGYPSLKYGDPAN--LEEYSGGRDFKSLEKFATEN 71 
                  7***********865.799*******98799***************99988..69**************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 897.53
//
Query:       MMETSP1061-20121228|11233_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-10   39.1   0.1    5.9e-05   20.7   0.0    2.2  2  TIGR03553 F420_FbiB_CTERM: F420 biosynthesis protein FbiB, C-terminal domain
    9.9e-08   29.4   0.1    0.00072   16.8   0.0    2.3  2  TIGR02476 BluB: cob(II)yrinic acid a,c-diamide reductase


Domain annotation for each model (and alignments):
>> TIGR03553  F420_FbiB_CTERM: F420 biosynthesis protein FbiB, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.9e-08   5.9e-05       5      49 ..      63     107 ..      59     123 .. 0.86
   2 !   16.3   0.0   6.6e-07    0.0014     122     181 ..     156     216 ..     145     231 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2.9e-08
    TIGR03553   5 lrrsvrefsadpvdpdavraavaealtapaphhtrpvrfvlveda 49 
                   rrsv +f++d v+++av +a  +al ap    + p+r+  + ++
  MMETSP1061-20121228|11233_1  63 IRRSVVKFTDDKVPEEAVTKAAEAALMAPNHFLSEPTRMYDLGSE 107
                  7*****************************999****98776554 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 6.6e-07
    TIGR03553 122 avGaavqallvalaveglGscwvgstifa.advvreeldlpadweplGavavGypaeplkp 181
                  +v  a q+++ +la +g+Gs w++ ++   +  + ++   p+d + +G +  G pa+p ++
  MMETSP1061-20121228|11233_1 156 TVACAAQNFMQSLAEDGVGSKWMTGALGIdPTEIMKVAGAPEDEKMIGVIWYGMPAKPIGE 216
                  466789*****************999865256688999******************99765 PP

>> TIGR02476  BluB: cob(II)yrinic acid a,c-diamide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.5e-07   0.00072       7      62 ..      55     110 ..      50     141 .. 0.85
   2 !   10.6   0.0   2.8e-05     0.058     126     181 ..     153     211 ..     131     218 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.5e-07
    TIGR02476   7 aavyrllkeRRDvRrfrsdPvdeevlerlleaahlAPsvGlsqPWrivrveeeakr 62 
                    +++ l  RR v +f+ d v+ee++++  eaa +AP   ls+P r+  + +ea+ 
  MMETSP1061-20121228|11233_1  55 FSIAQGLPIRRSVVKFTDDKVPEEAVTKAAEAALMAPNHFLSEPTRMYDLGSEAVG 110
                  567788899***********************************999998887754 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 2.8e-05
    TIGR02476 126 leysvalaiqnlwlaaRaeGlGvGwvs...ildpealarllevPeslrlvaylClGyvd 181
                  +++ va+a qn+   +  +G+G  w+     +dp++++++ ++Pe+ ++++++  G + 
  MMETSP1061-20121228|11233_1 153 DHATVACAAQNFMQSLAEDGVGSKWMTgalGIDPTEIMKVAGAPEDEKMIGVIWYGMPA 211
                  67899********************9743348*******************99999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 834.74
//
Query:       MMETSP1061-20121228|11298_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.37
# Mc/sec: 634.97
//
Query:       MMETSP1061-20121228|11309_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1330.45
//
Query:       MMETSP1061-20121228|11306_1  [L=714]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-253  841.1   0.0   1.4e-253  840.9   0.0    1.0  1  TIGR00232 tktlase_bact: transketolase
      3e-19   66.8   0.1    4.4e-11   39.8   0.0    2.2  2  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
    0.00074   16.3   0.0      0.002   14.9   0.1    1.6  2  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
     0.0017   15.2   0.0     0.0029   14.4   0.0    1.3  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
     0.0018   14.1   0.0     0.0045   12.8   0.0    1.6  2  TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type
     0.0048   13.0   0.0      0.013   11.6   0.0    1.6  2  TIGR03186 AKGDH_not_PDH: alpha-ketoglutarate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  840.9   0.0    2e-256  1.4e-253       2     650 ..      35     686 ..      34     690 .. 0.97

  Alignments for each domain:
  == domain 1    score: 840.9 bits;  conditional E-value: 2e-256
    TIGR00232   2 klvnairlLavdaiekaksGhpGaplGlapiaevlwkkflklnPtnpkWinRDRfvlsaGhgsmllYsllhllGyd.lsiedlkqfrqlesktpghPelaetagvevttGPLGqGianavGlalaektlaaefnkesaeivdhytyvlvGDGdlqeGisseaaslaGhlkLgkLivlyDsnkisidgeveksfsedvkkRfeaygWevlevedgedleeikkaiekakkskdkPtlikvktiigfgspnkegteevhgaplkeeevkllkkklglnyee..Fevpqevydffkkevkergekaeeewneklakykkkypelakeferrlsgelpadyekklkefka.kkkalatRkaskevlnalakelpellggsaDlarsnltklkesk.elkenalgnyiryGvRefamgaimngialhGglkpygatFlvFvdYakpaiRlaaLmklkviyvythDsigvGeDGpthqpveqlaslRaipnlsvwRPaDeketaaayklalesqdaptvlilsRqnlpqleesslekvlkGgYvlkdskn.PdiiliatGsevelaveaakkLakenikvrvvslpsidlldkqdeeYresvlpanvtllaieasaaleWykyaklegavlgids.fGesakgdkvfekfgFtvenvvakak 650
                  + +n+ir+ a+d+++ a+sGhpGap+Glap+a+vlwk+ +k++ +np+WinRDRfvls+Gh+++l+Y++lhl+Gy+   +edlk frql s tpghPe++ tagvev+tGPLGqGi+navG+a+ae ++aa +n e+++i+d++tyv++GDG+lqeG+s ea+slaGhl+LgkLivlyD+n+i+idg++  sf+edv+kR+eay+W+v +v dg+ +e+++kai++a++++dkP++i vkt+ig gsp+k+g+++ hg+pl++eev ++kk++gl + e  Fe+++ v+ +f +e+ ++ge+a+ ew++   +y+++ pe+ake++rr  gelp+d  + +++f + ++k+ atRk s+ +lna+ ++lpel+ggsaDl++sn t  k+++   ++++ g+yir+GvRe+amga++ng+ ++G ++py+atF++Fv Y ++++Rl+aL+++ viyv+ hDsig+GeDGpthqp+eq  ++R++pn+++wRPaD  e  a+y+ a++++++p+ +i sR n++    ss ek++kG+Y+l +s++ P +i+i+tG e+ ++ +a +kL + +i + +vs+p+ d++ +q++eY+ svlp ++  l++eas+   W+++ + +   +gid+ fG+s++g+ +fe++gFt en+++k  
  MMETSP1061-20121228|11306_1  35 ECINTIRATAIDMVQAANSGHPGAPMGLAPVAYVLWKEIMKYSSSNPDWINRDRFVLSNGHACALQYTMLHLTGYEnSKLEDLKAFRQLGSTTPGHPENFVTAGVEVSTGPLGQGISNAVGMAMAETQMAALYNTEEHKIFDNFTYVVCGDGCLQEGVSCEASSLAGHLQLGKLIVLYDDNNITIDGDTTLSFTEDVAKRYEAYNWHVQKVADGTKTEDLRKAIAEAQSVTDKPSMICVKTVIGEGSPSKAGSASCHGSPLGAEEVVATKKAYGLPHPEktFEISDAVKGVF-EEAAKKGEAARTEWQAVWDAYATANPEKAKEIKRRFAGELPDDVFELMPKFVVgEDKDQATRKHSQACLNAIFPKLPELVGGSADLTPSNCTFAKGASdYQHSSPEGRYIRFGVREHAMGAVCNGLFAYGAFRPYCATFVTFVGYCMGSVRLSALSRMGVIYVFSHDSIGIGEDGPTHQPIEQFEQIRSMPNIHLWRPADMDEMVASYQCAVQHRHTPSFIICSRSNVKGQFGSSAEKAMKGAYTLIESAEtPALIIISTGQEIGFCADAVEKLVAAGIPTALVSMPCQDVFLQQSQEYQASVLPGHIPTLSVEASSVHGWHRFSHAQ---VGIDNmFGASGNGNALFEHYGFTPENIANKGM 686
                  679************************************************************************94457**************************************************************************************************************************************************************************************************9765559********766.567789*************************************999999998736778*************************************9995678999********************************************************************************************************************************************9999999**************************************************************************99...9*9854*********************99865 PP

>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.1e-09   1.4e-06      17     176 ..      31     220 ..      21     276 .. 0.75
   2 !   39.8   0.0   6.4e-14   4.4e-11     348     528 ..     428     612 ..     412     686 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.1e-09
    TIGR00204  17 elekls.delrekllesv.sasgGhlasglGvveltvalhkv...fd......tdkdkliwdvghqa...yahklltG....rreelstlrqkkGla.gfpkrseseydvlsaGhsstsisaglGiavaael....kga......dekvvaviGdGaltaGmalealnhaGdlk.kdllvilndnemsis 176
                  +le+ + +++r++ ++ v +a++Gh ++ +G   +   l+k+   +       +++d+++   gh +   y+   ltG    + e+l+++rq    + g+p    ++   +s+G     is ++G+a+a ++     ++      d+ +  v GdG+l  G+  ea   aG+l+  +l+v+ +dn+++i 
  MMETSP1061-20121228|11306_1  31 DLEQECiNTIRATAIDMVqAANSGHPGAPMGLAPVAYVLWKEimkYSssnpdwINRDRFVLSNGHACalqYTMLHLTGyensKLEDLKAFRQLGSTTpGHPENFVTAGVEVSTGPLGQGISNAVGMAMAETQmaalYNTeehkifDNFTYVVCGDGCLQEGVSCEASSLAGHLQlGKLIVLYDDNNITID 220
                  566655489*******994679*******9999988888765222332222234689********743337777789944444578899999877652577777777788999**************99754111212211111144566899********************62578888899*99986 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 6.4e-14
    TIGR00204 348 kkfPk.ryfdvaiaeqhavtlaaal.aieGlkPvvaiystflqraydqv.vhdvaiqklpvllaidraGivGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrGnavgvelteeekleiGksellrkged..illlgfGtlveealevaeelkekgieatvvdl 528
                  +  P+ ry+  ++ e    +++ +l a + ++P  a + tf+  +  +v +  +++  +  +++ d  Gi G+dG+thq +     +rs+Pn+ l  P d +e+    + a+++ ++p+ +   r n  g      ek   G  +l+ + e   +++++ G+ +   +++ e+l   gi +++v +
  MMETSP1061-20121228|11306_1 428 HSSPEgRYIRFGVREHAMGAVCNGLfAYGAFRPYCATFVTFVGYCMGSVrLSALSRMGVIYVFSHDSIGI-GEDGPTHQPIEQFEQIRSMPNIHLWRPADMDEMVASYQCAVQHRHTPSFIICSRSNVKGQFGSSAEKAMKGAYTLIESAETpaLIIISTGQEIGFCADAVEKLVAAGIPTALVSM 612
                  555544788888877554456666538899*************999998333344444445677788886.****************************************************************999999*****9987743378999**********************99987 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   2.9e-06     0.002     112     219 ..     146     264 ..     141     277 .. 0.75
   2 ?   -3.6   0.0       1.3   8.9e+02     152     176 ..     475     499 ..     470     509 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.9e-06
    TIGR03182 112 vgaqvplatGlafaekyk..........kedevtlaffGdgavnqGqvyEslnlaalwklPvifvi.ennkyamGtaverssaekdlakkgesfgikglev.dGmdvlavreaakeaver 219
                  +g++++ a+G+a+ae+              d+ t++++Gdg  ++G   E+  la   +l  + v+ ++n+ ++   ++  s ++d+ak+ e+++ + ++v dG+   + r+a++ea   
  MMETSP1061-20121228|11306_1 146 LGQGISNAVGMAMAETQMaalynteehkIFDNFTYVVCGDGCLQEGVSCEASSLAGHLQLGKLIVLyDDNNITIDGDTT-LSFTEDVAKRYEAYNWHVQKVaDGTKTEDLRKAIAEAQSV 264
                  68889999999998865556666654323368899********************999997655542678888866554.567899***********99976899888888887777554 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.3
    TIGR03182 152 slnlaalwklPvifviennkyamGt 176
                  s+ l+al ++ vi+v    + ++G 
  MMETSP1061-20121228|11306_1 475 SVRLSALSRMGVIYVFSHDSIGIGE 499
                  67799999999****9999999985 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   4.2e-06    0.0029     123     218 ..     145     251 ..     104     275 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.2e-06
    TIGR03181 123 pigtqvlhAaGvAlalklkg..........ekevavayiGdGgtsegdfyealnfAavfkap.vvfvvqNNqwAISvprskqtaaktlaqkavaagipgvqv.DGnDv 218
                  p+g+ ++ A+G+A+a ++             ++ +++++GdG   eg   ea  +A+  ++  ++++   N+  I   ++      ++a++  a++ +  +v DG   
  MMETSP1061-20121228|11306_1 145 PLGQGISNAVGMAMAETQMAalynteehkiFDNFTYVVCGDGCLQEGVSCEASSLAGHLQLGkLIVLYDDNNITIDGDTTLSFTE-DVAKRYEAYNWHVQKVaDGTKT 251
                  78999**********9887778887766444899**************************9615666778999998888776655.5999999999888877677654 PP

>> TIGR00759  aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   6.6e-06    0.0045      72     300 ..      30     256 ..      16     281 .. 0.77
   2 ?   -2.6   0.0       0.3     2e+02     362     397 ..     526     563 ..     523     599 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.6e-06
    TIGR00759  72 lelerrirsiirwnaiamvlrankkdldlGGhissyasaaelyevgfnhffraksekeg...gd.lvffqghaaPGvyarafleGrlte..eqldnfrqevagdGlssyPhPklmPdfwqfptvsmGlGPinaiyqarf...lkylenrglkdtsdqkvyaflGdGemdepeskgaitlaarekldnlvfvincnlqrldGPvrgngkiiqeleslfrGagwnvikvlwgsewdella 300
                   +le+   ++ir  ai mv  an       Gh  +    a +  v ++  ++ +s++ +   +d  v   gha+   y+   l G  +   e l+ frq   g   + +P   ++    + +t+ +G G  na+  a     +  l n   ++  d+  y + GdG + e  s  a +la++ +l  l+ + + n   +dG  +      +++   ++  +w+v kv  g++ ++l +
  MMETSP1061-20121228|11306_1  30 MDLEQECINTIRATAIDMVQAAN------SGHPGAPMGLAPVAYVLWKEIMKYSSSNPDwinRDrFVLSNGHACALQYTMLHLTGYENSklEDLKAFRQL--GSTTPGHPEN-FVTAGVEVSTGPLGQGISNAVGMAMAetqMAALYNTEEHKIFDNFTYVVCGDGCLQEGVSCEASSLAGHLQLGKLIVLYDDNNITIDGDTTL--SFTEDVAKRYEAYNWHVQKVADGTKTEDLRK 256
                  68889999999999999999988......45555555556666666666666555554444455268899*************99643322566667764..4444444443.5566789*************9888541115556666666777778899****************************************8764..5788999999999*******99998887755 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.3
    TIGR00759 362 dvkkvyaaykaakeakGkptvilak..tikGyglgeaa 397
                  d+  + a+y+ a++++  p  i+    ++kG   ++a 
  MMETSP1061-20121228|11306_1 526 DMDEMVASYQCAVQHRHTPSFIICSrsNVKGQFGSSAE 563
                  788899*************9988742257775444444 PP

>> TIGR03186  AKGDH_not_PDH: alpha-ketoglutarate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   1.9e-05     0.013      73     298 ..      31     254 ..      21     268 .. 0.70
   2 ?   -2.2   0.0      0.28   1.9e+02     362     387 ..     526     551 ..     522     567 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1.9e-05
    TIGR03186  73 eleerlaavlrwnalamvvranraygelgghiasyasaadlfevgfnhffraaedaeg.gdlvyfqphsapgvyaraflegflsda..qlehyrqeiageglcsyphpwlmpdfwqfptgsmgigpinaiyqarfmrylqnrglartegrkvwglf.....gdgemdepesiaalslaarerldnlvfvincnlqrldgpvrgngriideleslfagagwnvikvlwgsdwdal 298
                  +le+     +r  a+ mv  an  +    g   + a  a ++   + ++  ++ d  +   +v  + h++   y+  +l g+ +    +l+ +rq   g+    +p  ++     +  tg +g g  na+  a  m   q  +l  te++k++  f     gdg ++e  s  a sla   +l  l+ + + n   +dg         +++  ++    w v kv  g++ + l
  MMETSP1061-20121228|11306_1  31 DLEQECINTIRATAIDMVQAANSGHP---GAPMGLAPVAYVLWKEIMKYSSSNPDWINrDRFVLSNGHACALQYTMLHLTGYENSKleDLKAFRQL--GSTTPGHPENFVT-AGVEVSTGPLGQGISNAVGMA--MAETQMAALYNTEEHKIFDNFtyvvcGDGCLQEGVSCEASSLAGHLQLGKLIVLYDDNNITIDGDTT--LSFTEDVAKRYEAYNWHVQKVADGTKTEDL 254
                  66666666666667777666666543...2223344444444444444444444443314466677777777888888888765422256666663..3334445555544.456899************887..778888889999999887654444449*************************************865..567899999999999999999988876655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.28
    TIGR03186 362 dvrklyaayerakkhkgrptvilakt 387
                  d+  + a+y+ a++h+  p+ i+   
  MMETSP1061-20121228|11306_1 526 DMDEMVASYQCAVQHRHTPSFIICSR 551
                  889999*************9998653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (714 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.45
# Mc/sec: 2094.23
//
Query:       MMETSP1061-20121228|11312_1  [L=235]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-69  230.5   0.0    4.4e-69  230.3   0.0    1.0  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    2.2e-26   90.4   0.0    2.6e-26   90.2   0.0    1.1  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    1.7e-06   25.5   0.0    7.5e-06   23.4   0.0    1.8  1  TIGR03691 20S_bact_alpha: proteasome, alpha subunit
    3.6e-05   21.4   0.0      8e-05   20.3   0.0    1.5  1  TIGR03690 20S_bact_beta: proteasome, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  230.3   0.0   4.3e-72   4.4e-69       2     229 ..       5     231 ..       4     232 .. 0.98

  Alignments for each domain:
  == domain 1    score: 230.3 bits;  conditional E-value: 4.3e-72
    TIGR03633   2 aYDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakaleeelkaeevevavveveekkfrklskeevekll 229
                  aY  ++t fs  G+l+q+eYa +av  g t++Gi +k+gvv+++dk+ ts+l+++ ++ k+  +    g++ aG+  D rvl+ +ar+++qv+  +Y+e   v++l+k+ a ++q+ytq GGvrPfG++lli+Gvd + ++rl++ dPsG ++++ka+aiG+++ +++++lek+y+ed++l++ai+ al +l +  e e+++e++ev+vv +   kf  l+ e+++++l
  MMETSP1061-20121228|11312_1   5 AYSFSLTTFSRTGKLLQIEYALNAVANGRTSLGICAKDGVVIATDKKLTSELVDVANVHKVELLTPSCGVCYAGVGPDFRVLVHQARKSSQVYLRQYGEVQPVSQLVKRSAGVMQEYTQRGGVRPFGISLLIGGVDGDgSPRLYQVDPSGSYFSWKATAIGKNHVNAKNFLEKRYTEDMELEDAIHTALLTLREGFEGEMNSENIEVGVVRN--GKFSVLTPEQIQDYL 231
                  89999***********************************************************************************************************************************8769*********************************************************************987..89*********9998 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.2   0.0   2.5e-29   2.6e-26       1     180 [.      32     214 ..      32     219 .. 0.90

  Alignments for each domain:
  == domain 1    score: 90.2 bits;  conditional E-value: 2.5e-29
    TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllkss....kflpflvqllvgGvdeeg.pklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvi 180
                  g T +Gi +kdgvv+A+dk+++  +lv   nv+Kv+ +++ +++  aG   d + lv+  ++  ++y  + ++  +v++l +  + +++++     + pf ++ll+gGvd +g p+ly++Dp+Gs+ + k ta G     a   Le++Y+ed++le+a++ a+ +++   e ++ s ++i+v v+
  MMETSP1061-20121228|11312_1  32 GRTSLGICAKDGVVIATDKKLTS-ELVDVANVHKVELLTPSCGVCYAGVGPDFRVLVHQARKSSQVYLRQYGEVQPVSQLVKRSAGVMQEYtqrgGVRPFGISLLIGGVDGDGsPRLYQVDPSGSYFSWKATAIGKNHVNAKNFLEKRYTEDMELEDAIHTALLTLREGFEGEMNS-ENIEVGVV 214
                  5699*****************96.699****************************************9999999999988888888877663333689************97769************************************************9999999887766.55666665 PP

>> TIGR03691  20S_bact_alpha: proteasome, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   7.3e-09   7.5e-06      18     209 ..      23     216 ..      18     231 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 7.3e-09
    TIGR03691  18 elarkGiargrsvvvlsyadGilfvaenp..s.....aslhkiselydriafaavGkynefenlrraGvryadvrGysydrrdvtaralanvyaqtlGav..fte..qekPyevelvvaevgeeteedqlyrltfdGsivderefvvlGGtaeqiaaalkesyeeelsladalrvavqalaaesekekrelkaaslevavldr 209
                  e+a   +a gr+ + +  +dG+++ ++    s     a +hk+  l    +   +G   +f  l     ++a      y r+    + +++   ++ G +  +t+    +P+ + l +  v  +  +++ly++   Gs    +   ++G +  + ++ l+++y+e+++l+da++ a+ +l+++    + e++ +++ev+v+ +
  MMETSP1061-20121228|11312_1  23 EYALNAVANGRTSLGICAKDGVVIATDKKltSelvdvANVHKVELLTPSCGVCYAGVGPDFRVLV----HQARKSSQVYLRQYGEVQPVSQLVKRSAGVMqeYTQrgGVRPFGISLLIGGVDGD-GSPRLYQVDPSGSYFSWK-ATAIGKNHVNAKNFLEKRYTEDMELEDAIHTALLTLREG---FEGEMNSENIEVGVVRN 216
                  78888889999888888899988887764211111113467777777776666666667777664....44444444555555555555555555555542244434579********999765.6799*********98765.6799********************************997...45568889999998765 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   7.8e-08     8e-05       3     171 ..      30     196 ..      28     203 .. 0.71

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 7.8e-08
    TIGR03690   3 phgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtag...lav.elvklfqvelehyekieGvplslegkanrlaamvrsnlaa.alqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvaveal 171
                  ++g t + +  k+Gv++a d++ t+ +l+   +v+kv        v +aG+     + v +  k  qv l  y  ++ v+      ++r a ++++      ++ +  + ll+G    +++ r++  d +g+ +   + +++G   v ak  l k+y+ed++ eda++ a+ +l
  MMETSP1061-20121228|11312_1  30 ANGRTSLGICAKDGVVIATDKKLTS-ELVDVANVHKVELLTPSCGVCYAGVGPdfrVLVhQARKSSQVYLRQYGEVQPVS----QLVKRSAGVMQEYTQRgGVRPFG-ISLLIGGVDGDGSPRLYQVDPSGS-YFSWKATAIGKNHVNAKNFLEKRYTEDMELEDAIHTALLTL 196
                  67888999999***********996.788888888888888888888888753111333033445666666666555443....34445555554444331444554.45555555567789******9876.5567889****************************999776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (235 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.47
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|11342_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 839.60
//
Query:       MMETSP1061-20121228|11348_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 1105.41
//
Query:       MMETSP1061-20121228|11362_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 842.22
//
Query:       MMETSP1061-20121228|11373_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-15   54.1   1.1    4.3e-15   53.5   0.0    1.8  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    7.5e-14   49.9   0.0      1e-13   49.5   0.0    1.3  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.4e-12   45.4   0.0    2.8e-12   44.4   0.0    1.4  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    5.1e-10   37.3   0.1    1.1e-09   36.2   0.1    1.5  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    8.5e-09   32.2   0.0    1.4e-08   31.5   0.0    1.3  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    2.4e-05   21.1   0.0    4.3e-05   20.3   0.0    1.4  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    3.9e-05   20.5   0.0    6.4e-05   19.7   0.0    1.3  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0031   14.4   0.0     0.0055   13.5   0.0    1.3  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
  ------ inclusion threshold ------
      0.011   12.9   0.6      0.017   12.3   0.4    1.2  1  TIGR00310 ZPR1_znf: ZPR1 zinc finger domain


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1      0.35   1.6e+02     293     340 ..     105     149 ..      90     190 .. 0.58
   2 !   53.5   0.0   9.5e-18   4.3e-15     223     293 ..     209     279 ..     185     321 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.35
    TIGR01622 293 vglasDvteesdaslaskfedsfdeseqsgldlnteereqldekldrd 340
                  ++   D +  +d ++++  +++ d  ++ +++ln+  ++q +++l+r 
  MMETSP1061-20121228|11373_1 105 ISK--DDIMIEDPNADNDLQEE-DAAKELSTNLNAFWTKQQERQLQRK 149
                  444..44445555557766664.6677777777776666655555543 PP

  == domain 2    score: 53.5 bits;  conditional E-value: 9.5e-18
    TIGR01622 223 YvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikv 293
                   v n+  n tE +L+++F+pFG+i  v + kD+et +s+G+ F+ F++ + a +A+ekl G       +k 
  MMETSP1061-20121228|11373_1 209 RVTNISENTTESDLQDLFKPFGRISRVFVAKDKETMQSRGFAFVSFVNKDDAARAMEKLQGYGYDHLILKL 279
                  588999******************************************************97655555555 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   2.2e-16     1e-13     247     342 ..     183     279 ..     122     288 .. 0.85

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 2.2e-16
    TIGR01661 247 laadgavaglaagaqiaasdgagycifvynlspdtdeavlq.lfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqv 342
                  + a +a+ag  +g++   ++     i v n+s +t e+ lq lf pfG +  v + +d +t + +G++fvs  n d+aa a++ l Gy   + +l++
  MMETSP1061-20121228|11373_1 183 PGARAAMAGGGVGMKPERRTDDLNTIRVTNISENTTESDLQdLFKPFGRISRVFVAKDKETMQSRGFAFVSFVNKDDAARAMEKLQGYGYDHLILKL 279
                  444444445555666555555667899**********99955**********************************************988887776 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   6.1e-15   2.8e-12     181     242 ..     208     270 ..     195     296 .. 0.82

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 6.1e-15
    TIGR01628 181 lYvKnlddsvtedklrelFakfGeitSaivkkdekn.rkrgfafvnyekaedAkkAveelngk 242
                  + v n+ ++ te  l++lF +fG+i+ + v+kd++  ++rgfafv++ +++dA++A+e+l+g 
  MMETSP1061-20121228|11373_1 208 IRVTNISENTTESDLQDLFKPFGRISRVFVAKDKETmQSRGFAFVSFVNKDDAARAMEKLQGY 270
                  668899999999999999999999999999888764278999999999999999999999885 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   2.5e-12   1.1e-09      71     187 ..     170     285 ..     124     289 .. 0.72

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 2.5e-12
    TIGR01659  71 saatlgsvgnlanaastnslnslgsggsddndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyarpg 187
                  ++++  s g+ ++  +  ++  +g g + ++ t+  +t   v  + ++ t+ +l  lf+  g i    + +d  t  s g+afv f  + d+ ra+++l+g       lk+ +arp 
  MMETSP1061-20121228|11373_1 170 AGGGTASGGKYVPPGARAAMAGGGVGMKPERRTDDLNTIR-VTNISENTTESDLQDLFKPFGRISRVFVAKDKETMQSRGFAFVSFVNKDDAARAMEKLQGYGYDHLILKLEWARPN 285
                  2222333344444455555555555555555555555544.6678999*******************************************************************96 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   3.1e-11   1.4e-08     293     373 ..     202     282 ..     189     296 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 3.1e-11
    TIGR01642 293 ldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                  +d+ + + + n+  + ++  +++L ++FG +    + Kd +t +s+G+aF+ +++  ++  A++ L+G      +L+   A
  MMETSP1061-20121228|11373_1 202 TDDLNTIRVTNISENTTESDLQDLFKPFGRISRVFVAKDKETMQSRGFAFVSFVNKDDAARAMEKLQGYGYDHLILKLEWA 282
                  68889999************************************************************9888877776665 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   9.5e-08   4.3e-05     201     259 ..     205     264 ..     198     295 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 9.5e-08
    TIGR01645 201 fnri.vasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseai 259
                  +n i v+ + ++ +e dl+ +f  fG+i +  +a++  + + +Gf f+ f n+     a+
  MMETSP1061-20121228|11373_1 205 LNTIrVTNISENTTESDLQDLFKPFGRISRVFVAKDKETMQSRGFAFVSFVNKDDAARAM 264
                  677778999999999999999999999999999999999999999999999987666555 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.4e-07   6.4e-05     238     306 ..     210     284 ..     193     318 .. 0.57

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.4e-07
    TIGR01648 238 vrnlmletteeiieksfsefkpGavervkkird........yafvhfedredavkamdelnGkeleGseievtlakP 306
                  v n+  +tte  ++  f+ f  G + rv   +d        +afv f +++da +am++l G   +   + +  a+P
  MMETSP1061-20121228|11373_1 210 VTNISENTTESDLQDLFKPF--GRISRVFVAKDketmqsrgFAFVSFVNKDDAARAMEKLQGYGYDHLILKLEWARP 284
                  45555555555555555555..5555543222222222222566666666666666666666665555555555555 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.2e-05    0.0055       5      52 ..     208     261 ..     206     268 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.2e-05
    TIGR01649   5 vHvRnlpeevveadlvelliefGkvsyvlvlkgkrq......AlvEfedeesAk 52 
                  + v n+ e+ +e+dl +l ++fG++s v v k k+       A+v f + + A+
  MMETSP1061-20121228|11373_1 208 IRVTNISENTTESDLQDLFKPFGRISRVFVAKDKETmqsrgfAFVSFVNKDDAA 261
                  7899*************************9988863233334888887766665 PP

>> TIGR00310  ZPR1_znf: ZPR1 zinc finger domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.4   3.8e-05     0.017     111     176 ..      70     132 ..      54     150 .. 0.68

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.8e-05
    TIGR00310 111 talrlqsedeekkkkaeellerlkevieGkekltvi......leDPlgqslivseealkeklseeeieklkt 176
                  t    +s+d ek+++++++ + l +  eG ++ t+i      +eDP ++  +++e a k         +l t
  MMETSP1061-20121228|11373_1  70 TEKVRESKDVEKRRQWKKFGNALSDGAEGAQRSTIIskddimIEDPNADNDLQEEDAAK---------ELST 132
                  33333499**************************9933333344555555555555544.........4444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 1639.71
//
Query:       MMETSP1061-20121228|11389_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 425.30
//
Query:       MMETSP1061-20121228|11406_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1697.00
//
Query:       MMETSP1061-20121228|11448_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   14.5  16.8     0.0015   14.1  11.6    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0069   11.9  16.1     0.0095   11.4  11.1    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.013   12.8   0.0      0.023   12.0   0.0    1.3  1  TIGR01378 thi_PPkinase: thiamine pyrophosphokinase


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1  11.6   1.1e-06    0.0015     217     355 ..     256     394 ..     225     401 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-06
    TIGR02168 217 elkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeeles 355
                  e+++++++l++++l  +l++++  +e+l+e+lk+ +ee++ l+++l+ ++e++e l + +s+l + +e+++  l++++++ ++ eq  +  +++l++l + +ee + +  el++++ +++ ++++++++++++ e  e+
  MMETSP1061-20121228|11448_1 256 EIEKKEDKLQISMLQYELKQRNVMIENLKETLKQISEECNGLRKTLADVTEQHEGLASMNSSLLTMVEHQEIVLKATRTREEKWEQVAQLRRAKLQELVQMEEEDTFREVELKNTLARQAHQMSAIKANISTTLEAREN 394
                  6778888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888777777777777777777777777776666555444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4  11.1   6.9e-06    0.0095     371     511 ..     242     383 ..     209     399 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.9e-06
    TIGR02169 371 raeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeelek...lekelselerelaeleaqakaseeesresk 511
                    ++ ++d +   +  e ke k ++++l+ el++ +  ++ l+e+lk+++ee + l++ l+++ e+++ l++   +l   ++++e  l+ ++   ek e+  + ++++l++   +e+e +  e el++  a++  +++ s  ++
  MMETSP1061-20121228|11448_1 242 AGKIRDMDDHISVMEIEKKEDKLQISMLQYELKQRNVMIENLKETLKQISEECNGLRKTLADVTEQHEGLASMNSSLLTMVEHQEIVLKATRTREEKWEQVAQLRRAKLQElvqMEEEDTFREVELKNTLARQ--AHQMSAIKA 383
                  4567788888888888888888889999999998888899999999999999999999999999999999999999999999999888888888877777666666555542004444444444555544444..443333333 PP

>> TIGR01378  thi_PPkinase: thiamine pyrophosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.7e-05     0.023     132     183 ..     234     284 ..     225     295 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.7e-05
    TIGR01378 132 itllrpgkhtiekeakgeyiSllpfgesaanlttkglkYpLnnaelkfggll 183
                   t l+p +    ++++ ++iS++ +++++++l+++ l+Y+L+++++ +++l 
  MMETSP1061-20121228|11448_1 234 STCLSPATAGKIRDMD-DHISVMEIEKKEDKLQISMLQYELKQRNVMIENLK 284
                  5666666666677777.89************************999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       411  (0.100195); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1527.30
//
Query:       MMETSP1061-20121228|11469_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|11464_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 752.34
//
Query:       MMETSP1061-20121228|11492_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-85  284.2   0.2    4.1e-85  283.8   0.1    1.1  1  TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00120  ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.8   0.1     1e-88   4.1e-85      37     405 .]     113     488 .]      81     488 .] 0.84

  Alignments for each domain:
  == domain 1    score: 283.8 bits;  conditional E-value: 1e-88
    TIGR00120  37 vaaavfttnkvraapvkvskevlkdkasikaivvnsgnanavtGeqGlkDakemarlvaeklgieee.evlvastGviGrrldmekikkki.ekvieelkessnssekvakailttDtvpkevavelelegkkvriggvakGaGmiaPnmatlLgFittdveieskalqkmLrkatdksFnqitvDGdtstnDtvlvlangasetkaitedskeaeklkeallavcqelakaiarDGeGatkllevqvkgak.needakviaraiagslLvktavfGaDpnWGRivaaiGys....gadvdkeevsvilsdeke..evvlvdngeplefe..eeserae...eilk...sdeieivvdla.tGdeeataygCDLsydYvkinaeYtt 405
                    aa ft+nk+  ap+kv +++l+++  i+a+v+n    n + G +G  Da+ +++ va+ l++e +  vl +stGviG rl  +++ +++  ++i++++++  s  ++a+ai+ttD++pk  ++ l   ++ +r+ g+akGaGmi Pnmat+L++i+td+ + +++lq mL  +++ +Fn+++vDGd+st Dtv+ la++++++      + + +++++al  v + la  i+r+GeG+  ++ v +++   ++++a+ + r i++s L k av G+Dpn GR+++aiG        + d+ ++s++l++     e ++v +g+  e+e  +++++ae   +      +  +ei vd++ +G e+ ++ g DL+ +Yv ina+Y++
  MMETSP1061-20121228|11492_1 113 NWAACFTSNKFPGAPIKVGRKRLAAGGPIEALVINNKVSNVCSGGDGEADAELVCEAVAKALNLESKdMVLPSSTGVIGWRLPAKELAEEVvPEAIKKMQTE--SVLNAAEAIMTTDRFPKVRSITL---SNGARVVGIAKGAGMIEPNMATMLSYILTDATVPKEKLQSMLGSVVNDTFNCMSVDGDESTSDTVVCLASNKISE------EVNLDEFESALKRVSKGLAADIVRNGEGTSHVMRVAISNFPgTKKEARFLGRHIVNSPLFKCAVAGNDPNTGRLAGAIGSYmgkyMPESDTSKMSLTLGGRCIftEGKFVLEGDRVEKElsNHMKNAEygeDTHFpphQRFVEIGVDFGfEGMEDVVVLGSDLTKEYVVINADYRS 488
                  4699***********************************************************98751577799*********9999776515566655555..999**************965544...5889**************************************************************999988877......34799*********************************9753899*********************************9664444456678889999998543345666666666655554444444311122212336679******86799999******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 2385.58
//
Query:       MMETSP1061-20121228|11495_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2248.21
//
Query:       MMETSP1061-20121228|11499_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00063   17.1   0.0      0.033   11.5   0.0    2.4  2  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN
  ------ inclusion threshold ------
      0.017   13.4   0.4      0.046   12.0   0.1    1.8  2  TIGR00855 L12: ribosomal protein L7/L12


Domain annotation for each model (and alignments):
>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   1.6e-05     0.033      65     105 ..     157     196 ..     101     214 .. 0.88
   2 !    3.2   0.0    0.0053        11     204     223 ..     347     366 ..     338     379 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.6e-05
    TIGR02067  65 fgeeeedaeyvWvlDPiDGTksFirGvPvwgtLiaLlekgk 105
                   +  +e+++yv v DP+DG ++  +G+P  gt+i+++e+++
  MMETSP1061-20121228|11499_1 157 DAVFTETNKYVAVFDPLDGSSNVDAGIPT-GTIIGIYEHDE 196
                  555678999*******************7.******99876 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.0053
    TIGR02067 204 pyDiaalipiieeAggvitd 223
                  +y  a++  i+e+Aggv t+
  MMETSP1061-20121228|11499_1 347 LYEGAPMSFIMEQAGGVSTT 366
                  58999***********9986 PP

>> TIGR00855  L12: ribosomal protein L7/L12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   2.3e-05     0.046      31      87 ..       2      59 ..       1      77 [. 0.81
   2 ?   -1.8   0.0      0.43   8.8e+02      40      74 ..      88     122 ..      61     126 .. 0.63

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 2.3e-05
    TIGR00855 31 kfgvsAaaavaaaaaaaaaaeaaeektEfdvilkaaadk..kiavikvvreitGlgLkE 87
                 kf +sA ++v+ a++ + a  + ++k+ +   l++a++   ki v+ +v e tG+ Lk 
  MMETSP1061-20121228|11499_1  2 KFSISALVTVSLAGV-SHAFVTRQQKAHVPTALNVATEPrvKIPVLDEVCETTGVTLKR 59
                 799999999987777.45577788888888888877776679***************96 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 0.43
    TIGR00855  40 vaaaaaaaaaaeaaeektEfdvilkaaadkkiavi 74 
                  ++ + + +   +  +   E +v +++  +kk++vi
  MMETSP1061-20121228|11499_1  88 ITNMVKRSQLPSSETLGLEGEVNVQGEDQKKLDVI 122
                  44444433333334444566777788888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1777.45
//
Query:       MMETSP1061-20121228|11505_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-108  360.6   0.1     2e-108  360.4   0.0    1.0  1  TIGR01245 trpD: anthranilate phosphoribosyltransferase
    4.8e-16   56.0   2.2    5.7e-14   49.2   0.7    2.1  2  TIGR02645 ARCH_P_rylase: putative thymidine phosphorylase
      2e-14   50.8   0.7      5e-13   46.2   0.3    2.1  2  TIGR03327 AMP_phos: AMP phosphorylase
    7.3e-11   39.3   0.5    1.9e-09   34.7   0.2    2.1  2  TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase
    0.00011   19.0   0.9    0.00057   16.7   0.5    1.9  2  TIGR02643 T_phosphoryl: thymidine phosphorylase


Domain annotation for each model (and alignments):
>> TIGR01245  trpD: anthranilate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  360.4   0.0  2.5e-111    2e-108       6     329 ..      17     348 ..      11     349 .. 0.95

  Alignments for each domain:
  == domain 1    score: 360.4 bits;  conditional E-value: 2.5e-111
    TIGR01245   6 dnkdLseeeaeqlmkeimsgeasdaqiaAilvalrvkgeteeeiaglakalrekakkvekeeseelvDivGTGGDglktiNiSTasalvaaaaGvkvaKhGnrsvssksGsaDvLealgvnlelspekvarsleevgigFlfAPkyhpalkevapvRkeLgvrtvfNlLGPLlnParaklqvlGvyskdlvevlaevlknlg.vkralvvhgedglDEisltgetkvaelkdg.........eieeytlspedfglkraeleelkggsaeenaellkevlegke.kkakrdivvlNaaaalyvagkakdlkegvelakeaiksgkalekleelva 329
                    ++L+++e +++++ei++g a+++q++++l++lr kget++eiag+++a+ +  + v+    ++l+DivGTGGDg++tiNiSTas ++aaa+G  vaK Gnrsvss++GsaDvLealgv+++lspe+v +++++vg++F++AP  hpa++ vapvRk+Lgvrt fN+LGP++n a a+++v+Gv++++l+e++a +l+++g v++a+++hg  glDEis+ g+++++e+k+          e ++++++pe+ g++r+el +lkgg ++enae++++vl+g+  ++akrd +vlNa++   v g ++++++g+ela+e++ksgka e+l+++++
  MMETSP1061-20121228|11505_1  17 GDRSLTTDETKEAFSEILKG-ADEVQVGSLLTLLRQKGETPDEIAGMVQAMNDACNSVDL-GGQKLLDIVGTGGDGADTINISTASVVLAAACGCTVAKAGNRSVSSACGSADVLEALGVKIDLSPEQVVKCVNKVGVAFMMAPVNHPAMRFVAPVRKKLGVRTCFNILGPMTNAAGAQRAVIGVFHPELLELMAGALQKVGrVDHAVIIHG-VGLDEISPLGPATILEIKNTaaegepklyETRQFEFDPESVGIPRCELIDLKGGGPKENAEKFEAVLQGGDhTDAKRDSIVLNAGVGCWVYGLTDSIEDGCELARETLKSGKASELLQSWIS 348
                  5689***************9.*************************************99.5*****************************************************************************************************************************************997479*******.*****************986333333333567899*********************************98747899******************************************9986 PP

>> TIGR02645  ARCH_P_rylase: putative thymidine phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.7     7e-17   5.7e-14      90     231 ..      11     155 ..       6     199 .. 0.86
   2 !    6.1   0.0    0.0008      0.65     371     396 ..     324     349 ..     281     355 .. 0.83

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 7e-17
    TIGR02645  90 irkklrg.kklkkeeikaivsdivdeklsdveisafltalaingldvdeiealtiamvetGetlewdrevivDkhsiGGvPGnktsl..lvvpivaaaGLliPktssraitsaaGtaDvvevlt.rvelsveelkrivekvggclv 231
                  i   + g ++l+++e k+  s+i +    +v++ ++lt l  +g + dei+ + +am ++ + +++  ++++D    GG   + +++    v ++aa G ++ k+  r++ sa G aDv+e l  +++ls e + + v+kvg +++
  MMETSP1061-20121228|11505_1  11 IETLIAGdRSLTTDETKEAFSEILKG-ADEVQVGSLLTLLRQKGETPDEIAGMVQAMNDACNSVDLGGQKLLDIVGTGGDGADTINIstASVVLAAACGCTVAKAGNRSVSSACGSADVLEALGvKIDLSPEQVVKCVNKVGVAFM 155
                  55555552579999999999999987.589************************************************9877765541166788899**************************649***************98875 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0008
    TIGR02645 371 gaGkelarelLdsGkaleklkeiiea 396
                  + G elare+L+sGka e l+  i a
  MMETSP1061-20121228|11505_1 324 EDGCELARETLKSGKASELLQSWISA 349
                  689***************99988876 PP

>> TIGR03327  AMP_phos: AMP phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.3     6e-16     5e-13      98     231 ..      19     154 ..       6     199 .. 0.88
   2 !    2.9   0.0    0.0081       6.7     369     395 ..     322     348 ..     280     352 .. 0.80

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 6e-16
    TIGR03327  98 eklkkeeieaivedivdekLsdielsafvtasyingldldeiealtramietGdklefdkkpivDkhsiGGvpGnkisl..lvvpivaaaGlliPktssraitsaaGtaDvmevl.anvelsadeikeivekvggvl 231
                  + l+ +e ++  ++i + +  ++++ + +t +  +g + dei+ + +am ++ + +++  + ++D+   GG   + i++    v + aa G ++ k+  r++ sa+G aDv+e l  +++ls +++ + v+kvg ++
  MMETSP1061-20121228|11505_1  19 RSLTTDETKEAFSEILKGA-DEVQVGSLLTLLRQKGETPDEIAGMVQAMNDACNSVDLGGQKLLDIVGTGGDGADTINIstASVVLAAACGCTVAKAGNRSVSSACGSADVLEALgVKIDLSPEQVVKCVNKVGVAF 154
                  5799999999999998765.89************************************************99888777611556666899************************9458***************9765 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0081
    TIGR03327 369 ekgegkelakeilesGkalekfkeiia 395
                  +++ g ela+e+l+sGka e ++  i 
  MMETSP1061-20121228|11505_1 322 SIEDGCELARETLKSGKASELLQSWIS 348
                  567899************998887665 PP

>> TIGR02644  Y_phosphoryl: pyrimidine-nucleoside phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.2   2.3e-12   1.9e-09      32     150 ..      38     156 ..      17     173 .. 0.86
   2 ?    2.6   0.0     0.012       9.8     281     313 ..     317     349 ..     284     354 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 2.3e-12
    TIGR02644  32 adyQisallmaiyfkgldkeEtlalTkamvesGevldlselkkikvDKHStGGvG.DkvsLvlaPlv..aalgvkvaklSGRgLghTGGTlDKLesipGfktelseeefieivkkvglaiig 150
                   + Q+ +ll+    kg + +E++ + +am ++ + +dl   k    D   tGG G D++ +  a +v  aa+g++vak   R+     G  D Le++ G+k++ls e+++++v+kvg+a++ 
  MMETSP1061-20121228|11505_1  38 DEVQVGSLLTLLRQKGETPDEIAGMVQAMNDACNSVDLGGQKL--LDIVGTGGDGaDTINISTASVVlaAACGCTVAKAGNRSVSSACGSADVLEAL-GVKIDLSPEQVVKCVNKVGVAFMM 156
                  67899999999999************************98765..5999****98687777666544339**************************9.5******************99875 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.012
    TIGR02644 281 aklakteeeakekleevlesgkalekfkefvea 313
                   +l+++ e++ e ++e+l+sgka e ++++++a
  MMETSP1061-20121228|11505_1 317 YGLTDSIEDGCELARETLKSGKASELLQSWISA 349
                  56777789999*******************987 PP

>> TIGR02643  T_phosphoryl: thymidine phosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.5   6.9e-07   0.00057      46     153 ..      50     155 ..      17     172 .. 0.80
   2 ?   -0.1   0.0     0.087        71     287     316 ..     318     347 ..     289     352 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.9e-07
    TIGR02643  46 yfngleldekvaltlamrdsGdvldwkdldlngPvvdkhstGGvG.dvvslmlaPiv..aacGgyvPmisGrGlGhtGGtldkleaiPGydvaPdeelfrkvvkdvGvaii 153
                    +g + de   +  am d+ + +d       + ++d   tGG G d++ +  a +v  aacG  v     r +  + G+ d lea+ G ++  ++e + k v++vGva +
  MMETSP1061-20121228|11505_1  50 RQKGETPDEIAGMVQAMNDACNSVDLG----GQKLLDIVGTGGDGaDTINISTASVVlaAACGCTVAKAGNRSVSSACGSADVLEAL-GVKIDLSPEQVVKCVNKVGVAFM 155
                  555666677777888999999999888....455688889999986777777777665599*************************8.89999999999*********976 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.087
    TIGR02643 287 klaadeaeaeakleavlesGraaerfarmv 316
                  +l+ + +++   ++++l+sG+a e +   +
  MMETSP1061-20121228|11505_1 318 GLTDSIEDGCELARETLKSGKASELLQSWI 347
                  467788999999**********99876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1520.00
//
Query:       MMETSP1061-20121228|11521_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    4.9   6.6          1    4.9   4.5    1.2  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   4.5   0.00026         1      44      82 ..      49      87 ..      22      91 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.00026
    TIGR01299 44 rsysrfeeeeddddyyapaetysrgeaaddeeegeasse 82
                 r+   + +++dddd     ++y+ ge ++d+++ +   +
  MMETSP1061-20121228|11521_1 49 RADDEIVDDDDDDDEIVDDDGYTDGEDDEDDDDDDDDDD 87
                 555667789999999**********99999877766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|11533_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.34
# Mc/sec: 298.92
//
Query:       MMETSP1061-20121228|11550_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-51  171.2   2.9      3e-51  171.2   2.0    1.6  2  TIGR00168 infC: translation initiation factor IF-3


Domain annotation for each model (and alignments):
>> TIGR00168  infC: translation initiation factor IF-3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   2.0   7.4e-55     3e-51       2     163 ..      17     182 ..      16     184 .. 0.92
   2 ?   -0.8   0.1     0.056   2.3e+02      48      73 ..     183     209 ..     180     219 .. 0.56

  Alignments for each domain:
  == domain 1    score: 171.2 bits;  conditional E-value: 7.4e-55
    TIGR00168   2 nekirakevrliden..G..eqlgivsleealkiAeea.glDLvlisanakpPvckildygkykyekekkkkeakKkqkviqvKEvklkpkidehDlevklkqakrflekgdkvKvtvrfrGRelahkelgeevldrvkekvaevaevekaptksegrsmvlllaPk 163
                  ne++   ++r++  n  G  + lgi+s++eal +A+e  glDL+l+ an++pPvcki dy ky+y kekk+ke kK+ k  ++KEvk+++kid hD++v+ k+a +fl++g++vK +v frGRe++h +lg+e+ld+++e+++++ + e  p k+egr+++++++P+
  MMETSP1061-20121228|11550_1  17 NEEVPRGDIRVTTPNakGkdDLLGIMSRDEALAKAKEMgGLDLILVNANSDPPVCKIADYSKYRYMKEKKAKEVKKNSKATEIKEVKMSYKIDVHDYQVRKKNALKFLKQGNRVKCSVMFRGREVQHDKLGYELLDKLAEEMEDICTREGRP-KREGRNLSMIVTPR 182
                  66666667777765522222579************99746****************************************************************************************************************.*************8 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.056
    TIGR00168  48 pPvckildygkykyeke.kkkkeakKk 73 
                  p v+k ++ ++   ek+ kk+ke++ +
  MMETSP1061-20121228|11550_1 183 PEVVKQVNADRRAVEKQkKKNKEERIR 209
                  556666666666555540445555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       317  (0.0772794); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1649.86
//
Query:       MMETSP1061-20121228|11572_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 1245.10
//
Query:       MMETSP1061-20121228|11583_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.1   0.0      0.021   11.9   0.0    1.1  1  TIGR02875 spore_0_A: sporulation transcription factor Spo0A


Domain annotation for each model (and alignments):
>> TIGR02875  spore_0_A: sporulation transcription factor Spo0A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   5.1e-06     0.021      99     166 ..      54     122 ..      43     130 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 5.1e-06
    TIGR02875  99 lGadyyvlkpfdleilaarirqlaektvkdikassstvlsaskae.ktldleaeiteiihelGvpahik 166
                  +Ga   v     le l+a + +la ++ kd+k+++ t ++   a   + +l+a i++ i   Gv +hi 
  MMETSP1061-20121228|11583_1  54 VGATAAVYTSAILEYLTAEVLELAGNACKDLKVKRITPRHLQLAIrGDEELDALIKATIAGGGVIPHIH 122
                  6777778888889******************9998877765544438999*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 904.13
//
Query:       MMETSP1061-20121228|11596_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035    9.6  70.5    0.00089   14.9  28.2    2.6  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        5.4    2.3  68.3      0.021   10.3  22.1    2.4  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.9     0.097     2e+02     309     330 ..      56      77 ..      12     112 .. 0.52
   2 ?    7.7  21.1   6.3e-05      0.13     233     405 ..     238     410 ..     218     413 .. 0.58
   3 ?   14.9  28.2   4.4e-07   0.00089     264     590 ..     349     674 ..     335     687 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.097
    TIGR02168 309 erleqlekeleeleeqleeles 330
                  e+ e++ ++ ++ e+q +e+e 
  MMETSP1061-20121228|11596_1  56 EKNEDAVDDTQAEETQEDENET 77 
                  1111111111111111111111 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 6.3e-05
    TIGR02168 233 rleelkeeleeleeelkeaeeeleeleaelke.leeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeela.eleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerl 405
                  r++++++e+   e++l++a++ +e + ae++e +e+  e l+++++e+e+el+++ ++ q l   +s le++++  ++ ++ l +++++le ++++le +k e e++ + +++ +  el++  + +e++   +e++++e++ ++e+   +l+e+++++a+++e+la+ ++++e++
  MMETSP1061-20121228|11596_1 238 RIQAEQKEIF--ESKLAQARQFHECALAEMEEnAEKMQEALNEKIAEKENELTKIHENSQVLVDHVSSLEAQMNTRSDTERFLATKIAKLEGTIKQLEDEKVENEASWNiDIAGKAGELEKATKLMEEKELGFEKDKNEFNIEKENIISKLDEAEKKLASTQEELAEKKKTFEKQ 410
                  3333333332..2333333333333333333303333445666777777777777777777777777777777777777777777777777777777776666666655456666666666666666666666667777777777777777777777777777776666666554 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 4.4e-07
    TIGR02168 264 eleeeleelrlekseleeeleelqkelq.elkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlq.arlesleslqen..leglsegvkallknksklagilgvlselieve...ekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeiea 590
                   +  ele+  + ++e+e  +e+ ++e++ e ++ is+l++  ++l + +e+l ++++  e+q +++ +k+ + +++++++e e ++++++++ l+++l+++ ++   l s++++l+++l++ +++  + ++ +++l+ae  +l+ ++++l+ r+e+ +   e+ +      ++++  l+  + ++e++ +++e++   + eal + +e le++ q l+ +e+++  l+ +r+e l +   +  +  + ++ ++ + ++ k   +++ + +++++e   e+ e+ ++ +++e+ ++ vve e + ++++e+  + ++  v+++p dv+++++ e+
  MMETSP1061-20121228|11596_1 349 GKAGELEKATKLMEEKELGFEKDKNEFNiEKENIISKLDEAEKKLASTQEELAEKKKTFEKQSRDWLNKERHIAAKVNQIEIEWASAQANCAILDSQLKKRMENESLLASQVNTLTQRLTDSADNAMKFTKFIKELEAEKLNLQHTVQSLTTRLEKVTGVMEDTR------KHQMTILDDAIVQEEMMAKSMETHAGMVSEALTHEKELLETKAQLLTMVEQSFTVLNeKRIERLSTASAQgqYLANMNSCRQNMLSSVK--AVTSNVMSVLTTElnlESVESEVDHMISEETEDEVVEAEVETEETVELVVSPKKTLVSVVPDDVATDEDDEG 674
                  455556666666666666666666665534455566776666666666677778888888888888888888888888888888888888888888888877777778888888888888888888888888888888888888888888888777777776664......56677788888888888888888888888888888888888888888888777766524566555444430033344444444444433..334444444444411134567788888888888888888888888888877776777777777666665555 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.3      0.16   3.2e+02     172     191 ..      57      76 ..      36      97 .. 0.48
   2 ?   10.3  22.1     1e-05     0.021     753     924 ..     238     411 ..     225     421 .. 0.83
   3 ?    1.3  17.3    0.0055        11     233     915 ..     418     646 ..     408     690 .. 0.44

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.16
    TIGR02169 172 kkekaleeLeeveerierve 191
                  k e+a ++ ++ e + +++e
  MMETSP1061-20121228|11596_1  57 KNEDAVDDTQAEETQEDENE 76 
                  11111111111111111111 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 1e-05
    TIGR02169 753 eleekkeel..keleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeie.elkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelk 924
                   ++++++e+   +l++  +  e +la+++e+ e++++ l +eki e+e+el k++e+ + +   ++++ea++n ++  + +l  +i++l+  i++le+ k e+e+  + ++ +k  ele+  + +e ++  +e+ +++ + e e++ ++l e+ekk    ++e+ +k+k  +++ 
  MMETSP1061-20121228|11596_1 238 RIQAEQKEIfeSKLAQARQFHECALAEMEENAEKMQEAL-NEKIAEKENELTKIHENSQVLVDHVSSLEAQMNTRSDTERFLATKIAKLEGTIKQLEDEKVENEASWNiDIAGKAGELEKATKLMEEKELGFEKDKNEFNIEKENIISKLDEAEKKLASTQEELAEKKKTFEKQS 411
                  444444444223455566667778888888888887665.5789999*******************************************************9999873566788899999999999******************************999999999999887765 PP

  == domain 3    score: 1.3 bits;  conditional E-value: 0.0055
    TIGR02169 233 lealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasieGvlGtvaqLgkveerYalAiEvAaGnrlnnvVVeddavAkeaIellkerkagratFLPLnkmrskerdlsilaedGvidfavdlvefdekyepvvkyvlgdTlvvedleaarrlmgkfRlVtLeGellekSGaitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaels...eekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelr.elekkkeeleaeiek 915
                   ++                                                                                                                                                                                                                                                                                                                                                                                                                                                                          +++++++ie +  +++++      ++++++++ + l+++ ++l +rl++++++  +  + ++e ++e+ +l++ +++l+ +l+k+   +ed  +++    ++ i + e  ++++e++   ++++l +  + l+ + +   + e++   l+e+++e  +  +++ + +++++   +++ + ++    +v        +L++  +e+++ ++ e e+++ e+e+e e+
  MMETSP1061-20121228|11596_1 418 ERH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IAAKVNQIEIEWASAQANCAILDSQLKKRMENESLLASQVNTLTQRLTDSADNAMKFTKFIKELEAEKLNLQHTVQSLTTRLEKVTGVMEDTRKHQMtilDDAIVQEEMMAKSMETHAGMVSEALTHEKELLETKAQLLTMVEQSFTVLNEKRIERLSTASAQGQYLANMNSCRQNMLSSVKAVTSNVMSVLTTELNLESVESEVDHMISeETEDEVVEAEVETEE 646
                  333..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................4444455555555555555555555555555555555555555555555555555554444444444444444444444444444444444433322000223333333333333333333333333333333333444455555555555555555555555555555555555555555544444444333333333333333333220222333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       499  (0.121648); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2479.25
//
Query:       MMETSP1061-20121228|11611_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 767.49
//
Query:       MMETSP1061-20121228|11623_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.2    6.6   6.7        1.4    6.4   4.6    1.1  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   4.6   0.00035       1.4     127     210 ..      43     124 ..      18     141 .. 0.40

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00035
    TIGR03354 127 qqvsseaseedlddslteagegaaprpapqaa...sldPl.kaldqepasaadlddgalsaelaeevaealpadlasidaestlepel 210
                  q+   +++ e  +   t++ +++ap++ap +a   ++ P  +a d++p  a         a++a++ a+ + a+ as++a++t +p++
  MMETSP1061-20121228|11623_1  43 QGEILDRPRELKKSKKTSKDTTKAPTKAPTKApkkTKSPKkSATDDAPTAAP------SAAPSASPTASPTAAPTASPTASPTASPTP 124
                  3333333333333333444444444444332111122222122333333332......223333333333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 559.01
//
Query:       MMETSP1061-20121228|11652_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-10   38.5   0.0    2.9e-10   38.3   0.0    1.1  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   7.1e-14   2.9e-10     138     216 ..      81     158 ..      32     163 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 7.1e-14
    TIGR02933 138 reavrerieallrrlrakreafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLfqlaegeLsavieselGwhlLl 216
                   +a+  +++ l+  +++++e+fae a+++s C ++ +gG L   ++G++  + d+  f+ + g +  +i +  G hl++
  MMETSP1061-20121228|11652_1  81 DDAI-AKLKELKAEINDDPEKFAEYAKQYSSCRSSAKGGDLETFGPGMMVKQFDKVCFEDEVGVVHGPISTAYGEHLIF 158
                  3444.5799999*****************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 964.09
//
Query:       MMETSP1061-20121228|11654_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00091   17.6   0.2     0.0014   17.0   0.1    1.3  1  TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family


Domain annotation for each model (and alignments):
>> TIGR00253  RNA_bind_YhbY: putative RNA-binding protein, YhbY family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   3.3e-07    0.0014      17      61 ..      68     115 ..      54     134 .. 0.80

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 3.3e-07
    TIGR00253  17 ePvvlvGkeGlsekvikeidraleerelikvkvrkea...eedkteia 61 
                  +P+v vG +G +ek  + + + l+++  +kvkv +++    e+ +e  
  MMETSP1061-20121228|11654_1  68 KPLVSVGAKGANEKHGNSLRQLLNDHTAVKVKVNTKSfgtLEKAYERL 115
                  8*********************************99855444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 831.04
//
Query:       MMETSP1061-20121228|11683_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 646.75
//
Query:       MMETSP1061-20121228|11690_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 467.96
//
Query:       MMETSP1061-20121228|11688_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1193.64
//
Query:       MMETSP1061-20121228|11699_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1355.43
//
Query:       MMETSP1061-20121228|11718_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   13.8   3.0       0.19   10.5   2.3    2.1  2  TIGR01870 cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2


Domain annotation for each model (and alignments):
>> TIGR01870  cas_TM1810_Csm2: CRISPR type III-A/MTUBE-associated protein Csm2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.3   4.6e-05      0.19      17      85 ..      44     111 ..      30     119 .. 0.74
   2 ?    0.7   0.0     0.053   2.2e+02      27      45 ..     158     176 ..     146     180 .] 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.6e-05
    TIGR01870  17 eekirrsekkneeivaelellkvklaYavgreg..refeelvelleelldkidkiddderrafekfvkfle 85 
                  +e+++++e ++ee + +le l ++ a +++re    e +  +++l+e++++ d+i     ++ ++  ++++
  MMETSP1061-20121228|11718_1  44 DEEAIQAEIREEEEKLRLERLEIEAAEQAQREAalHEESMAEDVLREAQQQEDEIS---AQEYQERSEHVQ 111
                  456666688999999*****************987777777888888888888883...333444444444 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.053
    TIGR01870  27 neeivaelellkvklaYav 45 
                    ++++++++ +v+ aY  
  MMETSP1061-20121228|11718_1 158 RPDYEDDVQMVRVQGAYDN 176
                  568899**********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       433  (0.105558); expected 82.0 (0.02)
Passed bias filter:                      210  (0.0511945); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 913.77
//
Query:       MMETSP1061-20121228|11732_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.5  31.3     0.0037   14.4  21.7    1.0  1  TIGR02794 tolA_full: protein TolA
  ------ inclusion threshold ------
        1.1    4.5   9.8        1.1    4.6   6.8    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4  21.7   1.8e-06    0.0037     177     229 ..       3      53 ..       1      54 [] 0.42

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.8e-06
    TIGR02794 177 aEaeeakkkaeaeak.KakaeaeaKakaeeakaKaeaeAkaKAeaeAkaKaeae 229
                  aE  ea+ k e+ea+ Ka++ea+ +a++e  + Kae+eA aKAe+eA+ +a+ e
  MMETSP1061-20121228|11732_1   3 AE--EARLKSEEEARlKAEEEARIQAQEE-TRLKAEEEAIAKAEEEARIQAAEE 53 
                  22..4455555555555555555555333.444444444445555544444433 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   6.8   0.00054       1.1     876     924 ..       5      52 ..       1      54 [] 0.62

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00054
    TIGR00927 876 eteieaeeeaevkededeGeieaeedgevkGdegeeqkveaeeeeeede 924
                  e+  ++eeea  k +e+e  i+a+e++ +k +e+++ k+e+e   ++ e
  MMETSP1061-20121228|11732_1   5 EARLKSEEEARLK-AEEEARIQAQEETRLKAEEEAIAKAEEEARIQAAE 52 
                  4555566665554.56677777777777777777777777776655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|11740_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   12.4   4.5       0.65    8.1   0.3    3.1  3  TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family


Domain annotation for each model (and alignments):
>> TIGR01617  arsC_related: transcriptional regulator, Spx/MgsR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.1     0.016        67      17      58 ..      92     133 ..      89     152 .. 0.79
   2 ?    2.4   0.0    0.0093        38      49      80 ..     153     183 ..     150     189 .. 0.83
   3 ?    8.1   0.3   0.00016      0.65      35      77 ..     199     242 ..     194     255 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.016
    TIGR01617  17 rwLeangieyeeidlkedtitreelkeilslledgidkllnt 58 
                  + ++++ ++y  ++ ++d  + e+l+  l+ l+ +  + + t
  MMETSP1061-20121228|11740_1  92 KVMKDQDLSYVRMQKQKDMKKAEKLQASLHMLDSENAESVKT 133
                  568899999*99**************9999988655444444 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.0093
    TIGR01617  49 edgidkllntrgesyraLdtkeklkelsdkea 80 
                   d ++++  ++g+++ +L  ++ +++l+++ +
  MMETSP1061-20121228|11740_1 153 ADHFETIPEFSGRAFNRLRKSD-IEKLTKQRM 183
                  578999*************555.999998765 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00016
    TIGR01617  35 titreelkeilslledgidkllntrgesyraLd.tkeklkelsd 77 
                  +it e+l++i +  +++ +kl   r+ +yr+++   e+ +++++
  MMETSP1061-20121228|11740_1 199 KITVEQLLKIKKAEKKQAKKLAKARSSAYREMEsRRERAEKMQT 242
                  7999*****************************43444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       494  (0.120429); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 1280.78
//
Query:       MMETSP1061-20121228|11752_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1294.75
//
Query:       MMETSP1061-20121228|11761_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00028   18.1   0.0    0.00036   17.8   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   8.8e-08   0.00036     112     174 ..     182     245 ..     151     248 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 8.8e-08
    TIGR03516 112 lgpktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGded.kigsnlpikstvtlln 174
                  lg +  k    ++i G r+g+  m++ge++++ +P  +ayG  G  d +i    ++  +++l++
  MMETSP1061-20121228|11761_1 182 LGGEPVKFPLAQVIPGWREGVLNMHKGETAMLGIPPEQAYGAEGTPDgRIPGGSTLFFKIQLVE 245
                  5555566666799*****************************9986547777777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1421.42
//
Query:       MMETSP1061-20121228|11797_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.4e-215  712.4   0.9   8.8e-215  712.2   0.6    1.0  1  TIGR00110 ilvD: dihydroxy-acid dehydratase
    6.8e-64  214.0   0.0    9.2e-64  213.5   0.0    1.1  1  TIGR01196 edd: phosphogluconate dehydratase
    1.4e-62  209.5   3.4    3.1e-61  205.0   2.3    2.0  1  TIGR03432 yjhG_yagF: putative dehydratase, YjhG/YagF family


Domain annotation for each model (and alignments):
>> TIGR00110  ilvD: dihydroxy-acid dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  712.2   0.6  6.4e-218  8.8e-215       2     542 ..      68     614 ..      67     615 .. 0.97

  Alignments for each domain:
  == domain 1    score: 712.2 bits;  conditional E-value: 6.4e-218
    TIGR00110   2 arallkatGlkdedlekPiiavvnsyteivPghvhlkdlaklvkeeieaaGgvakefntiavsDGiamgheGmkysLpsreiiaDsvetvvkahalDalvvissCDkivPGmlmaalrlniPaivvsGGpmeagktkl.sekidlvdvfeavgeyaagklseeeleeiersacPtagsCsGlftansmacltealGlslPgsstllatsaekkelakksgkrivelvkknikPrdiltkeafenaitldlalGGstntvLhllaiakeag...vklslddfdrlsrkvPllaklkPsgkkviedlhraGGvsavlkeldkegllhkdaltvtGktlaetlekvkv..lrvdqdvirsldnpvkkegglavLkGnlaeeGavvkiagveedilkfeGpakvfeseeealeailggkvkeGdvvviryeGPkGgPGmremLaPtsalvglGLgkkvaLitDGrfsGgtrGlsiGhvsPeaaegGaialvedGDkikiDien..rkldlevseeelaerrakakkkearevkgaLakyaklvssadkGavld 542
                  ++a+l+atG+++ed++kP++++++ + e +P+++hl +l++ vke++  a  v ++fnt++vsDGi+mg++Gm++sL+sr++iaDs+et ++a+++D+l++++ CDk++PG +ma+ rln+P i+v+GG++ ag+    +e +d+v++f+++g++  +k+seee++ei+r++cP+ g+C+G++tan+ma++ ealG+slP+ss+++a saek++ ++ +g+ ++ l+  ++kPrdi+tk afenai +++++GGstn+vLhl+a++++       ++l+df+r+s+ +P la+lkPsgk v+ed+++ GG+++v+k +  +g+++ d +tvtGkt +++l++++   l+ +q++ir+ld+p+kk+g+l +++Gnl + G v+ki+g+e    +f+G+a+v++se  ++e++ ++++k+Gdvv+iryeGP GgPG++emL+Ptsa++g+GLg++vaL+tDGrfsGgt+G++iGh++Pea +gG+ialv++GD i+iD++n  r++d+ + +ee+++rr++++++  r   g+L ky + v++a +G+v+d
  MMETSP1061-20121228|11797_1  68 SQAMLYATGMTEEDMDKPQVGICSVWYEGNPCNMHLLELSEYVKEGVVGADCVGMRFNTVGVSDGISMGTSGMRFSLQSRDLIADSIETTMSAQWYDGLIALPGCDKNMPGCIMAMGRLNRPGIMVYGGTIRAGHQPSsGESLDIVSAFQSYGQALYNKISEEERQEIVRHSCPGQGACGGMYTANTMATAIEALGMSLPYSSSSPADSAEKRDECRAAGEAMKTLLAMDLKPRDIMTKGAFENAIRIVMVTGGSTNAVLHLIAMSRSTRnpdAYVTLEDFQRISDVTPFLADLKPSGKFVMEDVQNIGGTPGVIKFMIDNGMFDGDQMTVTGKTWNQNLADMEHpgLTPGQEIIRPLDDPIKKTGHLLMMYGNLCPGGGVAKITGKEG--ETFTGTARVYDSEPLMMEGLKNKEIKKGDVVIIRYEGPTGGPGLPEMLTPTSAIMGAGLGNDVALLTDGRFSGGTHGFCIGHITPEAQVGGPIALVKNGDPIRIDAQNdkRTIDVLIPDEEWEKRRQEWTPPPLRANAGILFKYIQCVATATEGCVTD 614
                  69************************************************************************************************************************************9754389****************************************************************************************************************************98875333889****************************************************************99876224579*************************************9..89*******************************************************************************************************9753389********************************************97 PP

>> TIGR01196  edd: phosphogluconate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.5   0.0   6.7e-67   9.2e-64     109     568 ..     128     585 ..      68     613 .. 0.83

  Alignments for each domain:
  == domain 1    score: 213.5 bits;  conditional E-value: 6.7e-67
    TIGR01196 109 amcdGvtqGedGmelsllsrdvialstaiglshnmfdgalflGvcdkivpGlliaalsfGhlpavfvpaGpmasGlenk.....ekakvrqlfae...GkvdreellksemasyhapGtctfyGtansnqmlvelmGlhlpgasfvnpntplrdaltreaakrlarltakngevlplaelideksivnalvgllatGGstnhtlhlvaiaraa...GiilnwddlselsdlvpllarvypnGkadvnhfeaaGGlsflirellkeGllhedvetvagkGlrrytkepfledgkleyreaaeksldedilrkvdkpfsaeGGlkllkGnl..GravikvsavkeesrvieapaivfkdqaellaafkagelerdlvavvrfqGpka.nGmpelhklttvlGvl.qdrgfkvalvtdGrlsGasGkvpaaihvtpealegGalakirdGdlirldavnge..levlvddaelkarelee 568
                   + dG++ G +Gm +sl srd+ia s   ++s + +dg + l  cdk +pG  i a+   + p+++v +G + +G + +     + + + q + +    k++ ee  +   +s  + G+c    tan+    +e +G+ lp +s    ++  +   +r+a + + +l   + +++p  +++++ ++ na+  ++ tGGstn  lhl+a++r++      ++ +d++ +sd+ p la + p Gk  ++  +  GG + +i+ ++++G++  d  tv+gk            +++l   e +  +  ++i+r++d+p +++G l ++ Gnl  G +v k++   +e +     a+v++++  +++ +k++e+++  v+++r++Gp    G+pe+  lt++  ++    g  val+tdGr+sG +    +  h+tpea+ gG++a +++Gd ir+da+n++  ++vl+ d e++ r  e 
  MMETSP1061-20121228|11797_1 128 GVSDGISMGTSGMRFSLQSRDLIADSIETTMSAQWYDGLIALPGCDKNMPGC-IMAMGRLNRPGIMVYGGTIRAGHQPSsgeslDIVSAFQSYGQalyNKISEEERQEIVRHSCPGQGACGGMYTANTMATAIEALGMSLPYSSSSPADSAEKRDECRAAGEAMKTL--LAMDLKPR-DIMTKGAFENAIRIVMVTGGSTNAVLHLIAMSRSTrnpDAYVTLEDFQRISDVTPFLADLKPSGKFVMEDVQNIGGTPGVIKFMIDNGMFDGDQMTVTGKTW----------NQNLADMEHPGLTPGQEIIRPLDDPIKKTGHLLMMYGNLcpGGGVAKITG--KEGETFTGTARVYDSEPLMMEGLKNKEIKKGDVVIIRYEGPTGgPGLPEM--LTPTSAIMgAGLGNDVALLTDGRFSGGTHGF-CIGHITPEAQVGGPIALVKNGDPIRIDAQNDKrtIDVLIPDEEWEKRRQEW 585
                  578************************************************9.556667788********9999986431211145666777765223588889999999999999*****999*****************99986666555444455555555444..56788885.788999*************************9987333689********************************************************99854..........4456667788899999***********************77788999986..667778999********************************862699997..66666666246899***********977554.455**************************98644899*******9998654 PP

>> TIGR03432  yjhG_yagF: putative dehydratase, YjhG/YagF family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   2.3   2.3e-64   3.1e-61     113     581 ..     130     576 ..     116     592 .. 0.86

  Alignments for each domain:
  == domain 1    score: 205.0 bits;  conditional E-value: 2.3e-64
    TIGR03432 113 cdGrtqGttGmfdslpyrndaaivlrrlirslptrkgvlGvatcdkGlpamlmalaatkdlatvlvpGGvtllpeegedaGkvqtiGaryak.....geitleeaaeagckacaspGGGcqflGtaatsqvvaealGlalphsalapsGqpiwldlarrsaraalelekkGlstkdiltdkaienalvvhaafGGstnlllhipaiahaagl..rrptvddwkrinkkvprlvdalpnGpvghptvkvflaGgvpevmlhlrklGlldedvktvtGetldelldwwekserreslkkrlrerdgvdpddvilspakakergltstvtfpkGnlapeGsvikstaidpsvvdedGvyrkkGkakvfvseksaikaikhekieaGdvlvligrGplG.sGmeetyqvtsalkylsfgkhvalitdarfsGvstGaciGhvspealaGGpiGklrdGdlieividrnkleGtvnlvgded 581
                   dG + Gt Gm  sl  r+  a  +   + s     g++ +  cdk +p  +ma+ ++ + + ++v GG + ++++      +  + a  +      ++i+ ee +e+  ++c    G c  + ta t     ealG++lp+s+ +p+     +d  r++  a+ +l +  l+ +di+t+ a+ena+ +    GGstn +lh+ a++ ++       t++d++ri    p l d  p G      v+    Gg p v+  + + G++d d++tvtG+t++++l   e+               g+ p + i+ p     +  t  + +  Gnl+p G v k t        ++G    +G+a+v+ se   ++ +k+++i++Gdv+++  +Gp+G  G+ e+   tsa+     g +val+td rfsG + G ciGh++pea  GGpi  +++Gd i  +id+++ + t++++  ++
  MMETSP1061-20121228|11797_1 130 SDGISMGTSGMRFSLQSRDLIADSIETTM-SAQWYDGLIALPGCDKNMPGCIMAM-GRLNRPGIMVYGGTIRAGHQPSSGESLDIVSAFQSYgqalyNKISEEERQEIVRHSCPGQ-GACGGMYTANTMATAIEALGMSLPYSSSSPADSAEKRDECRAAGEAMKTLLAMDLKPRDIMTKGAFENAIRIVMVTGGSTNAVLHLIAMSRSTRNpdAYVTLEDFQRISDVTPFLADLKPSGKFVMEDVQN--IGGTPGVIKFMIDNGMFDGDQMTVTGKTWNQNLADMEH--------------PGLTPGQEIIRPLDDPIKK-TGHLLMMYGNLCPGGGVAKITG-------KEGE-TFTGTARVYDSEPLMMEGLKNKEIKKGDVVIIRYEGPTGgPGLPEMLTPTSAIMGAGLGNDVALLTDGRFSGGTHGFCIGHITPEAQVGGPIALVKNGDPI--RIDAQNDKRTIDVLIPDE 576
                  69*****************9999999887.556789******************8.56789********99887766444444444443332002226799999999999999765.679999********************************************************************************9888766541145699********************999988886..6*******************************986554..............5777888888888776665.45567789**********9885.......5554.568**********************************9636**********************************************************86..567777778888665443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 2209.97
//
Query:       MMETSP1061-20121228|11818_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.24
# Mc/sec: 236.48
//
Query:       MMETSP1061-20121228|11833_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1570.67
//
Query:       MMETSP1061-20121228|11834_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1979.84
//
Query:       MMETSP1061-20121228|11841_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.6e-117  389.2   0.0   7.9e-117  388.1   0.0    1.6  1  TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase
    3.3e-05   21.2   0.0    7.6e-05   20.0   0.0    1.5  1  TIGR03611 RutD: pyrimidine utilization protein D
    0.00049   17.4   0.0     0.0009   16.5   0.0    1.4  1  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
     0.0013   16.0   0.1     0.0053   14.0   0.0    2.0  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
     0.0079   13.6   0.0       0.69    7.2   0.0    2.2  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases


Domain annotation for each model (and alignments):
>> TIGR01392  homoserO_Ac_trn: homoserine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  388.1   0.0  9.6e-120  7.9e-117       2     350 ..     125     475 ..     124     476 .. 0.93

  Alignments for each domain:
  == domain 1    score: 388.1 bits;  conditional E-value: 9.6e-120
    TIGR01392   2 eeeltlesGevlsevevayktyGtlnaerdNavlvcHaltgsahvagkadeedkGWWdellGpgraldtsryfvvclNvlGsckGstgPlsinpetgkpygaefPlvtirDlvkaqkall.dsLgveklaavvGgSlGGmqalewalsy............pervkkivvlatsarasaqaiafnevqrqailsDpeyndGeyaeeeqPekGLalARmlalltYrseesleerfgreakseeslassl...eeefsvesylryqgkkfverFdAnsYllltkaldthdlargrrdslkealkkikapvlvvgiesDllftleeqeelakalkaakleyaeieseeGHDaFllekekveelirefl 350
                  ++++ le+G vl+++e++y+tyG ln+++dN+++vcHaltg+a ++   +     WW  llG+++a+dts+yf+vc N lGsc+Gst P s+npet+ pyg++fP v+++D+vk q +l+ ++Lg +++++v+GgS+GGmq++e+a+++              +v++++++a +a ++a++ia++evqrqai++Dpe+++  ++     +kGL++AR++++++Yr+ + ++++fgr+ +++++ +s+    ++  +v+syl+yqg kf++rFd  +Y+ +t+++d+hd++rgr  s++e+l+++++p++v+gi+sD+l++l+eqee++++++++kl    i+s+eGHD+Flle+e+v++ i +fl
  MMETSP1061-20121228|11841_1 125 KNDFILENGVVLPKAELRYQTYGVLNEAKDNVIVVCHALTGNASLH---S-----WWGGLLGDNKAFDTSKYFIVCCNILGSCYGSTNPQSTNPETNAPYGKNFPDVSVKDTVKLQLHLVkEKLGASSIKCVIGGSFGGMQTMEFAVQGgipggefvaangSPFVRSVIPIACGASHTAWQIAISEVQRQAIYADPEWKNDPFNA----TKGLEVARQMGMISYRTAHGYRSKFGRDIRNDDDNKSTNygsNALWQVKSYLEYQGIKFIDRFDPITYVKMTEQMDSHDVSRGRGPSVAEVLQRVEIPACVLGIDSDVLYPLSEQEEIVQHMPNSKLV--IIRSDEGHDGFLLEQEQVNRCIVDFL 475
                  5789**************************************9999...5.....*************************************************************8887368**********************986422222222111145799**********************************99988....79*************************999887666653455999*********************************************************************************99..**********************9997 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   9.3e-08   7.6e-05     192     257 ..     411     477 ..     406     478 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 9.3e-08
    TIGR03611 192 arldriklpvlliaakDDlLvPytqsseLaekLPdaelklley.GghasnvtdpetfnellldfLas 257
                    l+r++ p +++    D+L P+++ +e+ +++P+++l+++    gh   + + e++n+ ++dfLa+
  MMETSP1061-20121228|11841_1 411 EVLQRVEIPACVLGIDSDVLYPLSEQEEIVQHMPNSKLVIIRSdEGHDGFLLEQEQVNRCIVDFLAK 477
                  56899**********************************9975269*******************75 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.1e-06    0.0009     194     265 ..     404     477 ..     390     479 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.1e-06
    TIGR02240 194 glgwtsihwlhkirqptlvlagdddpliplinmrllawripnaelhvi..ddghlflvtraeavapiimkflae 265
                  g g +    l++++ p+ vl  d d l pl +   +  ++pn++l +i  d+gh  ++   e v   i+ fla+
  MMETSP1061-20121228|11841_1 404 GRGPSVAEVLQRVEIPACVLGIDSDVLYPLSEQEEIVQHMPNSKLVIIrsDEGHDGFLLEQEQVNRCIVDFLAK 477
                  55666677899************************************98889**9999999**********986 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.44   3.6e+02      62      99 ..     225     264 ..     221     267 .. 0.64
   2 !   14.0   0.0   6.4e-06    0.0053     186     250 ..     410     475 ..     405     476 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.44
    TIGR02427  62 iedladdvlall.Dalgiekaa.vcGlSlGGliaqaLaar 99 
                  ++d ++  l l+ ++lg+++++ v+G S GG+ ++  a++
  MMETSP1061-20121228|11841_1 225 VKDTVKLQLHLVkEKLGASSIKcVIGGSFGGMQTMEFAVQ 264
                  55555544444324566666542789******99888765 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 6.4e-06
    TIGR02427 186 rerleeiavPtlviaGdeDgstPpelvreiadlvpgarfaeiee.aaHlpnleqpeafaallrdfl 250
                   e l+++++P+ v+  d D+  P ++ +ei++++p+++++ i++  +H   l + e++++ ++dfl
  MMETSP1061-20121228|11841_1 410 AEVLQRVEIPACVLGIDSDVLYPLSEQEEIVQHMPNSKLVIIRSdEGHDGFLLEQEQVNRCIVDFL 475
                  567899************************************97799**999999*********98 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00084      0.69      78     116 ..     225     264 ..     143     268 .. 0.77
   2 !    4.1   0.0    0.0075       6.2     226     287 ..     412     475 ..     408     476 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00084
    TIGR01250  78 tidrfvdEleevrekLaldk.fyllgqSwGglLaqeYalk 116
                   +d++   l  v+ekL++     ++g S+Gg+ ++e+a++
  MMETSP1061-20121228|11841_1 225 VKDTVKLQLHLVKEKLGASSiKCVIGGSFGGMQTMEFAVQ 264
                  4455555688899*****996689**************97 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0075
    TIGR01250 226 klkeIkvPtLltvgefdem.tpeaaremqekiaksrlvvfe.dgshltmieepeeylkllkdfl 287
                   l+ +++P+ +     d + +++  +e+ +++++s+lv+++ d +h  ++ e+e+ ++ + dfl
  MMETSP1061-20121228|11841_1 412 VLQRVEIPACVLGIDSDVLyPLSEQEEIVQHMPNSKLVIIRsDEGHDGFLLEQEQVNRCIVDFL 475
                  577888888887777776427789999***********9873789****************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1919.84
//
Query:       MMETSP1061-20121228|11850_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 490.83
//
Query:       MMETSP1061-20121228|11886_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 452.53
//
Query:       MMETSP1061-20121228|11888_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1777.14
//
Query:       MMETSP1061-20121228|11891_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.7e-249  824.3   2.7   6.5e-249  824.1   1.9    1.0  1  TIGR01039 atpD: ATP synthase F1, beta subunit
   2.1e-171  568.4   0.4   2.5e-171  568.1   0.3    1.0  1  TIGR03305 alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
    5.1e-67  224.2   1.0    6.7e-67  223.8   0.7    1.1  1  TIGR03498 FliI_clade3: flagellar protein export ATPase FliI
    1.6e-66  222.7   1.4    2.2e-66  222.3   1.0    1.1  1  TIGR01026 fliI_yscN: ATPase FliI/YscN family
    2.5e-66  222.0   0.3    3.2e-66  221.6   0.2    1.1  1  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
      3e-65  218.5   0.5      4e-65  218.0   0.4    1.1  1  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
      2e-61  206.0   0.2    2.7e-61  205.6   0.2    1.1  1  TIGR03497 FliI_clade2: flagellar protein export ATPase FliI
    5.5e-40  135.2   1.5    9.2e-34  114.6   0.0    2.0  2  TIGR01043 ATP_syn_A_arch: ATP synthase archaeal, A subunit
    1.7e-35  120.2   1.9    2.4e-35  119.7   1.3    1.1  1  TIGR01041 ATP_syn_B_arch: ATP synthase archaeal, B subunit
      6e-32  108.8   1.9    5.9e-29   98.9   0.0    2.0  2  TIGR01042 V-ATPase_V1_A: V-type ATPase, A subunit
    3.3e-30  102.8   1.1    3.2e-29   99.6   0.7    2.0  1  TIGR01040 V-ATPase_V1_B: V-type ATPase, B subunit
    4.4e-30  102.6   2.4      6e-30  102.2   1.7    1.1  1  TIGR00962 atpA: ATP synthase F1, alpha subunit
    9.5e-27   91.6   2.0    1.3e-26   91.2   1.4    1.2  1  TIGR03324 alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
    8.2e-08   29.3   0.0    1.7e-06   25.0   0.0    2.2  1  TIGR00767 rho: transcription termination factor Rho


Domain annotation for each model (and alignments):
>> TIGR01039  atpD: ATP synthase F1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  824.1   1.9  2.2e-251  6.5e-249       2     462 .]      52     526 .]      51     526 .] 0.98

  Alignments for each domain:
  == domain 1    score: 824.1 bits;  conditional E-value: 2.2e-251
    TIGR01039   2 kGkvvqvigavvdvefeesklpkiydalkvklekeseelvlevaqhlGddlvraialdstdGlvrglevkdtgkpievpvGkevlGrilnvlGepidekgevkkkek....lsihrkapsfeeqstkveiletGikvidllapyakGGkiglfGGaGvGktvliqelinniakehsGlsvfaGvGertreGndlylelkesgvld...........kvalvyGqmneppGarlrvaltgltlaeyfrdeegqdvllfidnifrftqaGsevsallGrlpsavGyqptlatemGelqeritstkkgsitsvqavyvpaddltdpapattfahldattvlsrkiaelGiypavdpldstsrlldpevvGeehyevarevqeilqrykelqdiiailGldelseedklvverarkierflsqpffvaevftGspGkyvklkdtiegfkeileGkyddlpeqafylvGsieevvekakkl 462
                  +Gk++ vigavvdv+f+++ lpki++al+v+    se+lvlevaqhlG+++vr+ia++stdGlvrg++ +dtg+pi+vpvG  +lGri+nv+Gep+dekg++ ++ek     ++hr+ap+f+eq  +++il tGikv+dllapyakGGkiglfGGaGvGktv+i+elinnia +h+G+svfaGvGertreGndly+e++e+gv++           k alvyGqmneppGar+rvaltgl++aeyfrdeegqdvllf+dnifrftqaGsevsallGr+psavGyqptlat+mG lqeritst kgsitsvqavyvpaddltdpapattfahldattvlsr+iaelGiypavdpldstsr+ldp+v+G+ehyevar  q++lq yk lqdiiailG+delse+dkl+v+rark+++f+sqpf+vaevftG++Gk+v l+d+i+gfk+i++G+yd+lpe afy+vG ieev eka +l
  MMETSP1061-20121228|11891_1  52 AGKITTVIGAVVDVQFPDK-LPKILNALEVEVPDGSERLVLEVAQHLGENTVRTIAMESTDGLVRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVDEKGPIFADEKdakyAPLHRSAPTFTEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAMNHGGYSVFAGVGERTREGNDLYHEMIEGGVIKideatgstegsKAALVYGQMNEPPGARARVALTGLAIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRVIGDEHYEVARSTQKLLQDYKGLQDIIAILGMDELSEDDKLTVSRARKVQKFMSQPFHVAEVFTGTAGKFVALEDSIKGFKAIINGEYDHLPEVAFYMVGGIEEVKEKAASL 526
                  69***************86.*********************************************************************************966554223379************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************875 PP

>> TIGR03305  alt_F1F0_F1_bet: alternate F1F0 ATPase, F1 subunit beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  568.1   0.3  8.5e-174  2.5e-171       1     448 [.      53     518 ..      53     519 .. 0.96

  Alignments for each domain:
  == domain 1    score: 568.1 bits;  conditional E-value: 8.5e-174
    TIGR03305   1 gkvvavrgsivdvrfeeelpalysvlkagr...ekevvvevlaqldakkvrgialtateglargmavkdsgaplkapvgkeilsrvfdvfgntidrres....lkdvkwrsvhqappaltrrssksevfetgikaidvlvplerggkaglfggagvgktvlltelihnlvsqeegvslfcgigercregeelyremkeagvl..d.........ntvmvfgqmneppgarfrvglaaltmaeyfrddekkdvlllidnifrfiqagsevsgllgqlpsrlgyqptlgtelaeleeriattedaaitsiqavyvpaddftdpaavhtfshlsaslvlsrkraseglypaidplkstsklatpsivgerhyklarevrrvlaqyeelkdiiamlgleelskedrrvvararrlerfltqpfftteqftglkgktvsledaldgcerilkdefedypekalymigeide 448
                  gk+++v g++vdv+f+++lp + + l+++    ++ +v+ev+++l +++vr+ia+ +t+gl rg++  d+gap+++pvg  +l+r+++v+g+++d++ +    +kd+k+  +h++ p++t++  +++++ tgik++d+l+p  +ggk glfggagvgktv++ eli n+  ++ g s+f g+ger reg++ly em e gv+  d         +  +v+gqmneppgar rv l+ l++aeyfrd+e +dvll++dnifrf qagsevs llg++ps +gyqptl+t++ +l+eri++t +++its+qavyvpadd+tdpa   tf+hl a+ vlsr  a  g+ypa+dpl+sts+++ p+++g+ hy++ar  +++l +y+ l+diia+lg++els++d+ +v+rar++++f++qpf+ +e ftg++gk+v+led+++g ++i+++e+++ pe a+ym+g i+e
  MMETSP1061-20121228|11891_1  53 GKITTVIGAVVDVQFPDKLPKILNALEVEVpdgSERLVLEVAQHLGENTVRTIAMESTDGLVRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVDEKGPifadEKDAKYAPLHRSAPTFTEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAMNHGGYSVFAGVGERTREGNDLYHEMIEGGVIkiDeatgstegsKAALVYGQMNEPPGARARVALTGLAIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRVIGDEHYEVARSTQKLLQDYKGLQDIIAILGMDELSEDDKLTVSRARKVQKFMSQPFHVAEVFTGTAGKFVALEDSIKGFKAIINGEYDHLPEVAFYMVGGIEE 518
                  7899********************999876656899************************************************************9873333689**********************************************************************************************973323333333335689******************************************************************************************************************************************************************************************************************************************************98 PP

>> TIGR03498  FliI_clade3: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.8   0.7   2.3e-69   6.7e-67       1     400 [.      53     470 ..      53     485 .. 0.88

  Alignments for each domain:
  == domain 1    score: 223.8 bits;  conditional E-value: 2.3e-69
    TIGR03498   1 GrvsevkgllvevaGlsaavrlGdlveieaeeg.kkvlaevvg.leedevllmpfeslegvelgaavvveeealevrpeeswlGRvidalgepiDgkgalaege...aavpvkaeppaalsRkrveeklktGvrvidlfltlcrGqRlGifaGsGvGkstllsmlaraaaaD...vvvialvGeRGRevref...........leddlgeeglkrsvvvvatsDesplmRrkaayvalaiaeyfRd.qgkdvllllDsvtRfakaqReialaageppvarGYtpsvfselPrLLeRaGpGaegkGsitglftvLvdgDdhnePvaDavrgilDGhivldRaiaergryPainvlksvsRla.kkvlspeekklvkrlrallaryeetedlirlGayrk.GsdaevDeavklvpkieeflkqe 400
                  G++++v g +v+v+ + +  ++ + +e+e+ +g ++++ ev + l e++v  +++es++g   g++ v + ++ +v + +  lGR+i+ +gep+D+kg++ + e   +  p++ ++p+ +++ r ++ l tG++v+dl+++ ++G ++G+f G+GvGk++++  l+++ a++    +v a vGeR Re +++           +++  g+   +++ +v    +e+p +R + a + laiaeyfRd +g+dvll++D + Rf++a  e++   g  p a GY p+  +++  L eR    ++gkGsit++ +v v +Dd ++P   ++ + lD   vl+R+iae g yPa+++l s+sR+  ++v+ +e+ ++ + +++ll++y+  +d+i + +  +  +d +    v+   k+++f++q 
  MMETSP1061-20121228|11891_1  53 GKITTVIGAVVDVQFPDKLPKILNALEVEVPDGsERLVLEVAQhLGENTVRTIAMESTDGLVRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVDEKGPIFADEkdaKYAPLHRSAPTFTEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAMNhggYSVFAGVGERTREGNDLyhemieggvikIDEATGSTEGSKAALVYGQMNEPPGARARVALTGLAIAEYFRDeEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERIT--STGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLdPRVIGDEHYEVARSTQKLLQDYKGLQDIIAILGMDElSEDDK--LTVSRARKVQKFMSQP 470
                  8999999***********99********9998856778899863788999**************************************************7665111456889999999*****************************************99999988777622369***********876422222222222335557777899******************************9459***********************************************98..689********************************************************87369999***********************98755544044444..4688888888888885 PP

>> TIGR01026  fliI_yscN: ATPase FliI/YscN family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.3   1.0   7.4e-69   2.2e-66      22     428 ..      50     477 ..      32     487 .. 0.86

  Alignments for each domain:
  == domain 1    score: 222.3 bits;  conditional E-value: 7.4e-69
    TIGR01026  22 kvvGrvkkvkgllieakgpq..asvGevclierkgsekkevvaevvg.fegekvllmpyeevegveagskvlaknealsvkvgegllGrvldalGkplDekgk.aldnveke...litapinPlkrakieevlstGvrsidalltvgkGqrlGifaGsGvGkst.LlGmiar..ateadvnvialiGerGrevkef...........iekdLgeeglkrsvvvvatsDespllrlkgayvataiaeyfrd.qGkdvlllmDsvtrfakaqreigLaaGepPatkGytPsvfsllpklleraGasekGsitafytvLveGDDlnePiaDevrailDGhivLsralaerglyPaidvlasisrllk.aivseekkkavrkfrellskykenedLiri.GaYkkGsdkelDkaikkleklerflkqdieekvnf 428
                     G+++ v+g +++ + p+   ++ +  ++e  + ++ ++v ev   + +++v   ++e++ g+  g+k + ++++++v+vg   lGr+++ +G+p+Dekg  + d+++++   l ++ +   ++ + +++l tG++++d l + +kG ++G+f G+GvGk + ++ +i     ++   +v a +Ger re ++            i++  g+   +++ +v    +e+p +r + a+++ aiaeyfrd +G+dvll++D + rf +a  e++  +G  P++ Gy P+  + + +l er  +++kGsit++ +v v  DDl++P   ++ a lD   vLsr++ae g+yPa+d l+s+sr+l  +++++e+++++r  ++ll  yk  +d+i i G+ +   d +l  +++   k+++f++q  +    f
  MMETSP1061-20121228|11891_1  50 LSAGKITTVIGAVVDVQFPDklPKILNALEVEVPDGSE-RLVLEVAQhLGENTVRTIAMESTDGLVRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVDEKGPiFADEKDAKyapLHRSAPTFTEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVvIMELINNiaMNHGGYSVFAGVGERTREGNDLyhemieggvikIDEATGSTEGSKAALVYGQMNEPPGARARVALTGLAIAEYFRDeEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDpRVIGDEHYEVARSTQKLLQDYKGLQDIIAIlGMDELSEDDKL--TVSRARKVQKFMSQPFHVAEVF 477
                  568**************998335899999999876555.5777776516778899**********************************************9856666666565666677777788999*********************************962577887754567889************876522222222222334456666688999***************************846*************************************************************************************************************99549***************************98455555556555..6889999*****9987766555 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.6   0.2   1.1e-68   3.2e-66       6     415 ..      52     481 ..      48     489 .. 0.88

  Alignments for each domain:
  == domain 1    score: 221.6 bits;  conditional E-value: 1.1e-68
    TIGR02546   6 lgrvtevsgtllkavlpea..rvgelclikekekeseleaevvgfeedeal.LsplgelsglslgseviplgrplsikvgeelLGrvldglGrpldgkkelkakeik..krpldaepPdplsRqkieqplalGvraiDglltvgeGqRiGifaeaGvGkstLlsmiarg...akadvivlaLiGeRGRevr....ef.......iekelgeekrkrsvlvvstsdrsslerlkaayvataiaeyfRd.qgkkvllllDsltRfaralreigLaaGepparrgyppsvfsslprlleRaGasekGsitalYtvLvegddmndpiadevrsilDGhivLsrklaernhyPaiDvlaslsRvlk.kvvskehkkaaaklrellakykevellirl.GeYkkGsdkeaDkaikkldeikkflrqsldekssyeetl 415
                   g++t v+g ++ ++ p+   ++ +  +++ +  +++l  ev     ++++   ++++++gl +g++ + +g p ++ vg   LGr+++ +G+p+d+k+++ a+e +    pl++++P  ++  + +++l +G++++D l   ++G +iG+f++aGvGk+ ++ +++++   ++    v+a +GeR Re +    e        i++++g+ + +++ lv    +++   r++ a+++ aiaeyfRd +g++vll++D + Rf++a  e++   G  p++ gy p++ + +  l eR  ++ kGsit++ +v v  dd +dp    + + lD   vLsr++ae + yPa+D l s sR+l+ +v+  eh++ a + ++ll+ yk ++++i + G  +  +d +    +++  +++kf++q  + +  +  t+
  MMETSP1061-20121228|11891_1  52 AGKITTVIGAVVDVQFPDKlpKILNALEVEVPDGSERLVLEVAQHLGENTVrTIAMESTDGLVRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVDEKGPIFADEKDakYAPLHRSAPTFTEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNiamNHGGYSVFAGVGERTREGNdlyhEMieggvikIDEATGSTEGSKAALVYGQMNEPPGARARVALTGLAIAEYFRDeEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDpRVIGDEHYEVARSTQKLLQDYKGLQDIIAIlGMDELSEDDK--LTVSRARKVQKFMSQPFHVAEVFTGTA 481
                  79***************963356666778878899999999997665555516799*******************************************988777666578********************************************************99433445689***********75222255233333345677888999*******************************9459*************************************************************************************************************964899*************************9725444444444..4799***********998777776665 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  218.0   0.4   1.4e-67     4e-65       1     400 [.      53     473 ..      53     485 .. 0.86

  Alignments for each domain:
  == domain 1    score: 218.0 bits;  conditional E-value: 1.4e-67
    TIGR03496   1 Gkltkvaglvleavgl..kasvgelveieeeeg.esveaevvg.feeeklllmpleeveglalgakvvlleeekklpvgeellGrvidalgepldgkgaleaeee....vsleaepinplkrerieevldvGvrainalltvgkGqrlglfagsGvGKsvLlgmlaratead...vvvvaLiGERgREvkef...........ieknLgeeglkrsvvvaatadespllrlraaalataiaeyfrdq.gkdvLllmDSltRfAmAqReialaiGEppatkgYppsvfaklpkLvEraGngkegkGsitafytvLvegddqqdpiadaaraiLDGHivLsRelaeaghyPaidieaSiSRvm.kkvvseehlkaarklkqllsryeenrdlisigaYkk.GsdpelDeaiklvpklekflqqevee 400
                  Gk+t+v g v++++ +    ++ +++e+e  +g e++  ev + + e+++  +++e+++gl+ g+k v + +  ++pvg   lGr+i+  gep+d+kg++ a+e+    ++l+++++   ++ r ++ l +G+++++ l + +kG ++glf g+GvGK+v++  l+ + +++     v a +GER+RE +++           i+++ g++  +++ +v    +e+p  r r a +  aiaeyfrd+ g+dvLl++D + Rf +A  e++  +G  p + gY p+  + + +L Er  +  +gkGsit++ +v v  dd +dp   ++ a LD   vLsR++ae g+yPa+d ++S SR++ ++v+ +eh+++ar+ ++ll  y+  +d+i+i +  + ++d +l  ++++  k++kf++q ++ 
  MMETSP1061-20121228|11891_1  53 GKITTVIGAVVDVQFPdkLPKILNALEVEVPDGsERLVLEVAQhLGENTVRTIAMESTDGLVRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVDEKGPIFADEKdakyAPLHRSAPTFTEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAMNhggYSVFAGVGERTREGNDLyhemieggvikIDEATGSTEGSKAALVYGQMNEPPGARARVALTGLAIAEYFRDEeGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITS--TGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLdPRVIGDEHYEVARSTQKLLQDYKGLQDIIAILGMDElSEDDKL--TVSRARKVQKFMSQPFHV 473
                  788888888888887743356777888877666455666776525667778999*********************************************97665544448899999999****************************************998888877665522279***********8776222222222222344566667899*****************************9659***********************************************988..6*********************************************************983689**************************99666551556655..799999*******98765 PP

>> TIGR03497  FliI_clade2: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.6   0.2   9.1e-64   2.7e-61       1     400 [.      53     475 ..      53     486 .. 0.86

  Alignments for each domain:
  == domain 1    score: 205.6 bits;  conditional E-value: 9.1e-64
    TIGR03497   1 Gkvkkvvglvieakgpka..kiGelcsikk.keekkvlaevvgfkeek.vlLmPleevegiapgslveatgkklavkvgkellGkvldglGepldekelvkkkek....lpleaeppnplkrkrikdvlevgvkaidglltvGkGqrvGifagsGvGkstl.lgmiarna..kadinviaLvGerGrevref...........iekdLge.eGlkksvvvvatsdqpallrlkaalvataiaeyfrd.qGkkvllmmDsvtrfamaqrevglavgepPttkGytpsvfsllpklleraGksekGsitglytvLvdgDdlnePiaDavrgilDGhivLsreLaeknhyPaidvlksvsrvme.eivseehkelaeklrellavykeaedlikigaykkgsnkkideaiekkekinkfLkqkidekv 400
                  Gk+++v+g v+  + p+   ki + ++++   ++++++ ev     e+ v  + +e ++g+  g++ + tg +++v+vg   lG++++ +Gep+dek+++   ek     pl++++p   ++ r +d l +g+k++d l    kG ++G+f g+GvGk+++ + +i   a  +    v a vGer re +++           i++  g  eG  k+ +v    ++p   r + al++ aiaeyfrd +G++vll +D + rf +a  ev+   g  P++ Gy p++ + +  l er  ++ kGsit++ +v v +Ddl +P + +  + lD   vLsr++ae + yPa+d l+s sr+++ +++ +eh e+a + ++ll+ yk  +d+i i  + + s+   + +++   k++kf+ q  + + 
  MMETSP1061-20121228|11891_1  53 GKITTVIGAVVDVQFPDKlpKILNALEVEVpDGSERLVLEVAQHLGENtVRTIAMESTDGLVRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVDEKGPIFADEKdakyAPLHRSAPTFTEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVViMELINNIAmnHGGYSVFAGVGERTREGNDLyhemieggvikIDEATGStEG-SKAALVYGQMNEPPGARARVALTGLAIAEYFRDeEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDpRVIGDEHYEVARSTQKLLQDYKGLQDIIAILGMDELSEDD-KLTVSRARKVQKFMSQPFHVAE 475
                  89************9964339999999998678889*****98665551567899*****************************************999865443222267889999999**************************************9761455555441146789***********8875222222222111222333144.577889999999********************945**************************************************************************************************************96489****************************9998888654.4567888999***999776555 PP

>> TIGR01043  ATP_syn_A_arch: ATP synthase archaeal, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.5   2.2e-07   6.6e-05      27      91 ..      82     147 ..      51     151 .. 0.74
   2 !  114.6   0.0   3.2e-36   9.2e-34     198     512 ..     171     478 ..     155     499 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.2e-07
    TIGR01043  27 vkvgeekliGeiiriegdkaviqv.yeetsGikpgepvestGaplsvelGpGllesiydGvqrpld 91 
                  v  g e+l+ e+ +  g+++v  +  e+t+G+  g+++++tGap+ v +Gp  l++i + +  p+d
  MMETSP1061-20121228|11891_1  82 VPDGSERLVLEVAQHLGENTVRTIaMESTDGLVRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVD 147
                  333889***********9999765379******************************999999886 PP

  == domain 2    score: 114.6 bits;  conditional E-value: 3.2e-36
    TIGR01043 198 vkeklepeeplvtGqrildtlfpiakGGtaaipGpfGsGktvtqqslak...wsdaeivvyiGcGerGnemtevleefpe...le.dpktGkpllertvliantsnmpvaareasiytGitiaeyfrd.mGydvalvadstsrwaealreisgrleempgeeGypaylasrlaefyeraGrvktlgseeregsvtvvgavsppGGdfsepvtqntlrivkvfwaldaklaerrhfpainwlqsyslyvdsvedwfaenvdeewrelrdealellqkeaelqeivrlvGsdalpekeklvlevarlireaflkqnafdevdtys 512
                  + e+   +  lvtG++++d l p akGG   + G+ G Gktv   +l +   + +    v+ G Ger  e  +  +e+ e   ++ d  tG    +++ l+    n p  ar     tG++iaeyfrd  G dv+l  d   r+++a  e+s+ l  +p+  Gy   la+ +    er        s+  +gs+t v av  p  d+++p    t   +     l  ++ae   +pa++ l+s s   d       + + +e+ e+ +++ +llq  + lq+i+ ++G d+l+e++kl++  ar +++ f+ q  f+  + ++
  MMETSP1061-20121228|11891_1 171 FTEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINniaMNHGGYSVFAGVGERTREGNDLYHEMIEggvIKiDEATGSTEGSKAALVYGQMNEPPGARARVALTGLAIAEYFRDeEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERIT------ST-GKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDP------RVIGDEHYEVARSTQKLLQDYKGLQDIIAILGMDELSEDDKLTVSRARKVQK-FMSQ-PFHVAEVFT 478
                  4566677888*********************************9999762224456689********6665555555443222444999**************************************945*********************************************99953......22.359*****************************************************99885......567888888888999********************************99975.5554.455555555 PP

>> TIGR01041  ATP_syn_B_arch: ATP synthase archaeal, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   1.3   8.1e-38   2.4e-35       5     414 ..      55     471 ..      52     480 .. 0.81

  Alignments for each domain:
  == domain 1    score: 119.7 bits;  conditional E-value: 8.1e-38
    TIGR01041   5 iteikGplvlvekveeva.ydeiveielpdGekrrGqvldsseglvvvq..vfegttgldkeatkvrflGetlklkvsedllGrilngsGepidgGpeivpderrdinGaalnpaa.....reypeefiqtGisaidGlntlvrGqklpifsgsGlphnelalqiarqakvrgeesefavvfaalGitaeeanffkkdf.........ektGale..ravvflnladdpaverivtprlaltvaeylafekdlhvlviltdltnycealreisaareevpGrrGypGylytdlatlyeraGrvkGkkGsitqipiltmpdddithpipdltGyiteGqivlsrelhrkGiyppinvlpslsrlmkdGiGeGktredhkdvsdqlyaayaegrdlrdlvaivGeealserdrkylkfadefekkfvkqgr 414
                  it++ G +v v+  +++    + +e+e+pdG++r    +  + g   v+   +e+t gl + +   + +G  ++++v    lGri+n +Gep+d+   i +de+ d + a+l   a     +   ++ + tGi  +d l    +G k+  f g+G+ +  + +++ ++ +++  +  +  vfa +G ++ e n + +++         e tG+ e  +a+++    ++p+  r     + l++aey+  e++  vl  + ++  +++a  e+sa    +p   Gy   l td+ +l er       kGsit +  + +p dd+t p p  t    +   vlsr++ + Giyp ++ l s sr+++  +      ++h +v+        + + l+d++ai+G + lse d+  ++ a +  +kf++q +
  MMETSP1061-20121228|11891_1  55 ITTVIGAVVDVQFPDKLPkILNALEVEVPDGSERLVLEVAQHLGENTVRtiAMESTDGLVRGQK-CVDTGAPIQVPVGPLTLGRIINVIGEPVDEKGPIFADEK-DAKYAPLHRSAptfteQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAMNHGG--Y-SVFAGVGERTREGNDLYHEMieggvikidEATGSTEgsKAALVYGQMNEPPGARARVALTGLAIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITS--TGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRV----IGDEHYEVARSTQKLLQDYKGLQDIIAILGMDELSEDDKLTVSRARKV-QKFMSQPF 471
                  7777777777777666541457789*******99654443333333343115799999988776.778**************************9888998875.66666665444111114456899*******************************9999887776655443..3.36888888877777655554122222222567777644678889999*******99999*************************************************************864..568*************************9*****************************998654....336677777777777777789*****************9999888775.67888765 PP

>> TIGR01042  V-ATPase_V1_A: V-type ATPase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.3   0.00023     0.068      27      91 ..      82     147 ..      51     163 .. 0.76
   2 !   98.9   0.0     2e-31   5.9e-29     196     500 ..     167     465 ..     155     499 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00023
    TIGR01042  27 vrvgheelvgeiirlegdk.atiqvyeetagltvgdpvlrtgkplsvelgpgilgnifdgiqrplk 91 
                  v  g+e lv e+ +  g++ +     e t gl  g++ + tg p+ v +gp  lg i + i  p++
  MMETSP1061-20121228|11891_1  82 VPDGSERLVLEVAQHLGENtVRTIAMESTDGLVRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVD 147
                  5569999999999765554044556899*******************************9999986 PP

  == domain 2    score: 98.9 bits;  conditional E-value: 2e-31
    TIGR01042 196 sprpvaeklaadtplltgqrvldalfpsvqggttaipgafgcgktvisqslsk...ysnsdvivyvgcgergnemaevlrdfpel.tveldgreesi.mkrttlvantsnmpvaareasiytgitlaeyfrd.mgynvsmladstsrwaealreisgrlaempadsgypaylgarlasfyeragrvkclgsperegsvsivgavsppggdfsdpvtsatlgivqvfwgldkklaqrkhfpsvnwlisyskylkaleefyekeypefvelrtkvkeilqeeeeleeivqlvgkdalaesdkitlevaklike 500
                  s+   +e+  ++  l+tg +v+d l p  +gg + + g  g gktv+   l            v+ g ger  e  ++ +++ e  ++++d  + s    +++lv    n p  ar     tg+++aeyfrd  g++v ++ d   r+++a  e+s  l+ +p+  gy   l++ + ++ er    ++ g    +gs++ v av  p  d++dp  ++t++  +    l + +a+   +p+v+ l s s+    l++       e  e+ + ++++lq+ + l++i+ ++g d l+e dk+t+  a+ +++
  MMETSP1061-20121228|11891_1 167 SAPTFTEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINniaMNHGGYSVFAGVGERTREGNDLYHEMIEGgVIKIDEATGSTeGSKAALVYGQMNEPPGARARVALTGLAIAEYFRDeEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERI---TSTG----KGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRM---LDPR--VIGDEHYEVARSTQKLLQDYKGLQDIIAILGMDELSEDDKLTVSRARKVQK 465
                  44445788889999*******************************988777541213445678**************9999988526788766666515789*****************************9459********************************************9984...4444....7**************************************************999976...4543..233455667778899****************************99887653 PP

>> TIGR01040  V-ATPase_V1_B: V-type ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.7   1.1e-31   3.2e-29       8     423 ..      58     471 ..      53     481 .. 0.79

  Alignments for each domain:
  == domain 1    score: 99.6 bits;  conditional E-value: 1.1e-31
    TIGR01040   8 vngplvild.evkfpkfaeivnlkladgtvrkgqvlevs...gekavvqv.fegtsgidakkttveftgdilrlpvsedmlgrvfngsgkpidkgpkvlaedyldingqpinpkariype.....emiqtgisaidvmnsiargqkiplfsaaglphneiaaqicrqaglvkksekdvkdekeenfaivfaamgvnletarffkqdfeengsle..rvtlflnlandptieriitprlalttaeylayekekhvlviltdmssyadalrevsaareevpgrrgfpgymytdlatiyeragrvegrngsitqipiltmpnddithpipdltgyitegqiyvdrqlhnrqiyppinvlpslsrlmks.aigegmtrkdhsdvsnqlyakyaigkdvaamkavvgeealssedllyleflekfekkfiaqga 423
                  v g +v ++   k pk  + ++++++dg++r   vlev+   ge++v  + +e t g+ ++  ++  tg  +++pv    lgr++n  g+p+d+  +++a++  d +  p+  +a ++ e     +++ tgi  +d +   a+g ki lf +ag+ +  +  +++ + ++ +    +v  +  e        +  ++     +k d e +gs e  +++l     n+p   r       l+ aey+  e ++ vl+ + ++  +++a  evsa    +p+  g+   + td+ ++ er       +gsit +  + +p dd+t p p  t    +    + r++ +  iyp ++ l s sr++    ig+     +h +v+          k ++ + a++g + ls++d+l +    k + kf++q  
  MMETSP1061-20121228|11891_1  58 VIGAVVDVQfPDKLPKILNALEVEVPDGSERL--VLEVAqhlGENTVRTIaMESTDGL-VRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVDEKGPIFADE-KDAKYAPLHRSAPTFTEqgrtqDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAMNHGG-YSVFAGVGERTRE-GNDLYHEMIEGGVIKID-EATGSTEgsKAALVYGQMNEPPGARARVALTGLAIAEYFRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITS--TGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPrVIGD-----EHYEVARSTQKLLQDYKGLQDIIAILGMDELSEDDKLTVSRARKVQ-KFMSQPF 471
                  555555444234789999999********996..677651115666665537999999.56667778********************************987.6888888877777665422222799*****************************99999998888887753.3344333332222.22233333334445554.44555543388999999*****9999888889999********************************************************864..568************************99999**************************998614565.....4555555444444445666677789**************9998875.5887754 PP

>> TIGR00962  atpA: ATP synthase F1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.2   1.7     2e-32     6e-30      15     424 ..      40     470 ..      27     491 .. 0.83

  Alignments for each domain:
  == domain 1    score: 102.2 bits;  conditional E-value: 2e-32
    TIGR00962  15 ikkfekeieaeevGtvvsvadGiakve...Glenvlskeliefeggvk....gialnleedsvGvvilGdyseikeGsevkrtgevlevpvGdallGrvvnalGepidGkGdiesee....fsavekkaPgvierksvkePlqtGikaidaliPiGrGqreliiGdrqtGktavaidtiinqkdskkdvkcvyvaiGqkestvaqvvekleekgaleytivvaasasdsaslqy...........laPyagvalaeyfrd.kgkdaliiyddlskqavayrqlslllrrPPGreayPGdvfylhsrlleraaklsdekGaGsltalPiietqagdvsayiPtnvisitdGqiflesdlfnsGirPainvGlsvsrvGgaaqi.kaikkvaGslrlelaqyreleafsqf.a.sdldeatkkqlerGkrlvellkqe 424
                  ++ +++++ a   G++ +v   ++ v+    l ++l+   +e+++g +     +a+ l e++v  + + ++  +  G++   tg  ++vpvG   lGr++n +Gep+d kG+i ++e    + ++ + aP+  e+   ++ l tGik +d l P  +G +  + G    Gkt v ++ i n    ++  + v+  +G ++    ++ +++ e g ++      ++    a+l y               +g a+aeyfrd +g+d+l+  d++ + ++a  ++s ll r P    y   +      l er +      G+Gs+t++  +   a+d++   P+   +  d    l+ ++   Gi Pa++   s sr+     i     +va s +  l +y+ l+   +  +  +l e  k +++r +++ +++ q+
  MMETSP1061-20121228|11891_1  40 VRAYSSSAGALSAGKITTVIGAVVDVQfpdKLPKILNALEVEVPDGSErlvlEVAQHLGENTVRTIAMESTDGLVRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVDEKGPIFADEkdakYAPLHRSAPTFTEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAM-NHGGYSVFAGVGERTREGNDLYHEMIEGGVIKIDEATGSTEGSKAALVYgqmneppgaraRVALTGLAIAEYFRDeEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERIT----STGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDPRVIgDEHYEVARSTQKLLQDYKGLQDIIAIlGmDELSEDDKLTVSRARKVQKFMSQP 470
                  666777777777788877777777775333577777777788887765111156778999*****************************************************876512226689***********************************************998887766665.5689**********999999888888888887766666666666666663322221111145689*********8369*********************************9999988999999986....58*********************************************************9887777245678999999999999999876554252468999999999999999988886 PP

>> TIGR03324  alt_F1F0_F1_al: alternate F1F0 ATPase, F1 subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   1.4   4.5e-29   1.3e-26      59     422 ..      90     469 ..      30     508 .. 0.79

  Alignments for each domain:
  == domain 1    score: 91.2 bits;  conditional E-value: 4.5e-29
    TIGR03324  59 llGiafnvdedevGvvllgeysklqaGdevertgrvldvpvGdellGrvvdplGrpldgkkel....asskrlpierpapeimdrapvtvplqtGlkvvdalipiGrGqrelilGdrqtGktaiaidtilnq.kdknvlcvycaiGqrasavakvvaelrekgaldy......t.....ivvvtegndppGlqyiapyaatsiaeyfm.eqGrdvlivyddltkharayrelslllrrppGreafpGdifyvhsrllersthlrkerGGGsltalpiieteaqnisayiptnlisitdGqiylspelfelGvlpavdvGksvsrvGG.kaqlaayravaGdlklayaqfeelea.farfga.rldeetrkvierGrrirailkq 422
                  +l +a ++ e+ v ++ +++ + l  G++   tg  ++vpvG   lGr+++ +G p+d+k+++    +++k  p+ r ap+  ++      l tG+kvvd l p  +G +  ++G    Gkt + ++ i n   ++    v+  +G+r+     +  e+ e g ++       t       v ++ n+ppG +     +  +iaeyf  e+G+dvl+  d++ + ++a  e+s ll r p    +   +      l er t    ++G Gs+t++  +   a +++   p+   +  d    ls ++ elG+ pavd   s sr+   +     +  va + +     ++ l+   a +g   l e+ + +++r r++++ + q
  MMETSP1061-20121228|11891_1  90 VLEVAQHLGENTVRTIAMESTDGLVRGQKCVDTGAPIQVPVGPLTLGRIINVIGEPVDEKGPIfadeKDAKYAPLHRSAPTFTEQGRTQDILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIaMNHGGYSVFAGVGERTREGNDLYHEMIEGGVIKIdeatgsTegskaALVYGQMNEPPGARARVALTGLAIAEYFRdEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERIT----STGKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSIAELGIYPAVDPLDSTSRMLDpRVIGDEHYEVARSTQKLLQDYKGLQDiIAILGMdELSEDDKLTVSRARKVQKFMSQ 469
                  46678888999**************************************************9833223456689************************************************99999888852567789*********99877776666555444321111112222225788999*******99999999******7478**********************************9999999999****87....689******************************************************99643133333444444444444444555543134444325677777777777777766666 PP

>> TIGR00767  rho: transcription termination factor Rho
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   5.9e-09   1.7e-06     156     387 ..     185     434 ..     155     454 .. 0.72

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 5.9e-09
    TIGR00767 156 trvldliaPiGkGqralivaPPkaGktvllqeianaitrnnpevelivlliderPeevtdmqrs.vkgevv......ast...........fdepasrhvqvaelviekakr.lvekkkdvvilldsitrlarayntvsPasGkilsGGvdatalhkPkrflGaarnieeGGsltiiatalvetGskmdevifeefkgtGnaelkldrklaerrvfPaidikksGtrk.eelllskeelekvwvlrkvlsgl 387
                   +v+dl+aP  kG +  +      Gktv++ e+ n i++n+    +    + er  e  d+  + ++g v+       st           ++ep+    +va   +  a+  + e+++dv++++d i r+++a  +vs   G+i s    + +l      l         Gs+t + +  v +   +d      f    +a  +l+r++ae  ++Pa+d   s +r  +  ++ +e++e     +k+l++ 
  MMETSP1061-20121228|11891_1 185 IKVVDLLAPYAKGGKIGLFGGAGVGKTVVIMELINNIAMNHGGYSV-FAGVGERTREGNDLYHEmIEGGVIkideatGSTegskaalvygqMNEPPGARARVALTGLAIAEYfRDEEGQDVLLFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTGKGSITSVQAVYVPADDLTDPAPATTFAHL-DATTVLSRSIAELGIYPAVDPLDSTSRMlDPRVIGDEHYEVARSTQKLLQDY 434
                  589***********9999999********************98775.56899**9999998654145655532222212222222222222788888877777655555544135899**************************9987555556666555554444445669*****************9999988765.56678***************99999996244555566666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.58u 0.18s 00:00:00.76 Elapsed: 00:00:00.67
# Mc/sec: 1036.21
//
Query:       MMETSP1061-20121228|11910_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1989.99
//
Query:       MMETSP1061-20121228|11922_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    9.0  14.0      0.018   12.7   4.5    2.3  3  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA


Domain annotation for each model (and alignments):
>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   4.5   4.5e-06     0.018       2     115 ..       7     120 ..       6     131 .. 0.84
   2 ?   -4.0   0.2      0.65   2.7e+03      66      73 ..     189     196 ..     180     204 .. 0.44
   3 ?    0.9   0.0      0.02        82      38     129 ..     244     264 ..     226     274 .. 0.53

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.5e-06
    TIGR03927   2 llfLllflflpsadsaaenngkldvkpnryekkdiEkntellqgeetelekelftpeeqkkikkkkkkekkeqeelkdqLfs.enatesntvkktkkqLFsseyeqtsssseste 115
                   ++L+l+l+++sa ++ ++  +  +++++ + ++++++  +  ++  + +k + +++++ k+k++ +  ++  + ++  ++s +++  ++ +kk+k ++  +++e +++s ++++
  MMETSP1061-20121228|11922_1   7 FFLLVLVLLATSATAFRGDKRDNALQTDEEDLSPEDIDALRYLQDVQKNKKNKMNKKMKMKMKATSSPTVST-APTETPSKSpTKSPTKKMKKKMKMKMKMKNKELPTASPTAAP 120
                  57788888888999999999999***************97555455555779***************99997.8888889997888888888899999*****999999988764 PP

  == domain 2    score: -4.0 bits;  conditional E-value: 0.65
    TIGR03927  66 kkkkekke 73 
                  k++k k+ 
  MMETSP1061-20121228|11922_1 189 KQSKAKET 196
                  33333322 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.02
    TIGR03927  38 kntellqgeetelekelftpeeqkkikkkkkkekkeqeelkdqLfsenatesntvkktkkqLFsseyeqtsssseste...eeetektssilllv 129
                   +                                                                           +   +++t+k+s i+l+ 
  MMETSP1061-20121228|11922_1 244 QED--------------------------------------------------------------------------RrrrKDKTDKNSTIFLPR 264
                  222..........................................................................123356666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1517.87
//
Query:       MMETSP1061-20121228|11943_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 618.26
//
Query:       MMETSP1061-20121228|11958_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1340.20
//
Query:       MMETSP1061-20121228|11969_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 241.98
//
Query:       MMETSP1061-20121228|11972_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1079.48
//
Query:       MMETSP1061-20121228|11989_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.8    4.9  10.8        7.8    4.7   7.5    1.2  1  TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family


Domain annotation for each model (and alignments):
>> TIGR02898  spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   7.5    0.0019       7.8      14      50 ..       2      38 ..       1      54 [. 0.70

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0019
    TIGR02898 14 gCtnaekkskdnnnveeknveekaangentakdtnqg 50
                 gC   ++   ++nn++++n+ ++++n++n  +++n++
  MMETSP1061-20121228|11989_1  2 GCPSRNSGAAEPNNNKNTNYYNNKNNNTNYYNNNNKN 38
                 8888888888889999999888776666655555553 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 350.06
//
Query:       MMETSP1061-20121228|12003_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 455.96
//
Query:       MMETSP1061-20121228|12039_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 666.23
//
Query:       MMETSP1061-20121228|12095_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   11.1   0.1       0.12    8.9   0.0    1.9  2  TIGR00858 bioF: 8-amino-7-oxononanoate synthase


Domain annotation for each model (and alignments):
>> TIGR00858  bioF: 8-amino-7-oxononanoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.024        98     248     295 ..     187     234 ..     182     250 .. 0.83
   2 ?    8.9   0.0   2.9e-05      0.12      28      82 ..     305     360 ..     282     368 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.024
    TIGR00858 248 fifsTalpPavvaaalaaleliqeeperreklakliarlrkeleklgf 295
                  ++++ a    ++aa++ a   ++++++++e l++ i+ l++++ +l++
  MMETSP1061-20121228|12095_1 187 LLWDRACTLWNIAALRSASAALETDDKTKEGLKSAISHLQQAASHLSL 234
                  56666667778999999999999999*******999999999988874 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 2.9e-05
    TIGR00858  28 sNdYLgLakhpelieaaqealekygagstaSrlvsGnsk.lheelEeelaefkgte 82 
                   N+ L Lak+p+l +++ +  +++ga  +a  lv+  +   h+++E +l++  g e
  MMETSP1061-20121228|12095_1 305 YNEALTLAKDPRLQSELPNRCKEWGAHCKARSLVCQARAyFHSSIELRLTKDIGPE 360
                  5999******************************9776526889999998866655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 2015.03
//
Query:       MMETSP1061-20121228|12109_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 841.43
//
Query:       MMETSP1061-20121228|12124_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 433.68
//
Query:       MMETSP1061-20121228|12132_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1927.04
//
Query:       MMETSP1061-20121228|12169_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-06   25.0   0.3     0.0035   14.9   0.0    2.9  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0   0.00066       2.7      13      24 ..       2      13 ..       1      14 [. 0.85
   2 !   14.9   0.0   8.5e-07    0.0035       1      25 [.      16      39 ..      16      40 .. 0.95
   3 ?    1.4   0.1     0.014        58       1       9 [.      41      49 ..      41      50 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00066
    TIGR02167 13 lSnfdTsnVTnM 24
                 + ++ T++VT M
  MMETSP1061-20121228|12169_1  2 IGSWSTGKVTLM 13
                 789*******77 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 8.5e-07
    TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                 MF + +++++ +++ +  s+VTn+ 
  MMETSP1061-20121228|12169_1 16 MFKDATAFNQ-PIDPWELSSVTNLQ 39
                 9*********.************86 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.014
    TIGR02167  1 MFsgCssLt 9 
                 MF g s+++
  MMETSP1061-20121228|12169_1 41 MFKGASAFN 49
                 9***99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.17
# Mc/sec: 403.73
//
Query:       MMETSP1061-20121228|12213_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.2    4.3   9.5        4.3    4.3   6.6    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   6.6    0.0011       4.3      87     126 ..       4      40 ..       1      69 [. 0.49

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0011
    TIGR00601  87 PaatpesaptptpsatpasvaekksaaPasaveeessaee 126
                  P+a+p++ pt++p    as++++++a+P+  ++ee++++ 
  MMETSP1061-20121228|12213_1   4 PTASPSASPTASP---SASPTQSPTASPTPGASEETTSST 40 
                  3333333333333...333333333333333333332222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       313  (0.0763042); expected 82.0 (0.02)
Passed bias filter:                      196  (0.0477816); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 562.39
//
Query:       MMETSP1061-20121228|12207_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1235.04
//
Query:       MMETSP1061-20121228|12226_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-19   65.2  25.6    8.5e-05   20.1   0.4    7.8  8  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0045        18      12      26 .]       5      19 ..       3      19 .. 0.86
   2 !   15.7   0.1     5e-07    0.0021      12      25 ..      30      43 ..      29      44 .. 0.90
   3 !   20.1   0.4   2.1e-08   8.5e-05       4      26 .]      47      68 ..      45      68 .. 0.90
   4 ?   -3.6   0.2      0.54   2.2e+03       1       4 [.      69      72 ..      69      72 .. 0.88
   5 !   19.7   0.1   2.7e-08   0.00011      12      26 .]      78      92 ..      75      92 .. 0.91
   6 !    7.7   0.3   0.00015      0.63      10      24 ..     101     114 ..      93     115 .. 0.81
   7 !    8.5   0.0   8.7e-05      0.36      14      25 ..     129     140 ..     128     141 .. 0.87
   8 !    4.2   0.0     0.002       8.3       1      19 [.     142     159 ..     142     161 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0045
    TIGR02167 12 DlSnfdTsnVTnMss 26
                 +l+ +d+s V  M +
  MMETSP1061-20121228|12226_1  5 PLDDWDVSLVIKMGY 19
                 5899****9999975 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 5e-07
    TIGR02167 12 DlSnfdTsnVTnMs 25
                 +l+ +d+s+VT+M 
  MMETSP1061-20121228|12226_1 30 PLDDWDVSQVTDME 43
                 5899*********6 PP

  == domain 3    score: 20.1 bits;  conditional E-value: 2.1e-08
    TIGR02167  4 gCssLtsLDlSnfdTsnVTnMss 26
                  +s++++ +l +++T++VT M++
  MMETSP1061-20121228|12226_1 47 MNSNFNQ-PLGSWNTAKVTEMDY 68
                 5899999.9************87 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 0.54
    TIGR02167  1 MFsg 4 
                 MF+g
  MMETSP1061-20121228|12226_1 69 MFYG 72
                 9*97 PP

  == domain 5    score: 19.7 bits;  conditional E-value: 2.7e-08
    TIGR02167 12 DlSnfdTsnVTnMss 26
                 +lS++d+s+VT M++
  MMETSP1061-20121228|12226_1 78 PLSSWDVSKVTEMDG 92
                 69***********85 PP

  == domain 6    score: 7.7 bits;  conditional E-value: 0.00015
    TIGR02167  10 sLDlSnfdTsnVTnM 24 
                  + +l+ +d+snV  M
  MMETSP1061-20121228|12226_1 101 Q-PLDDWDVSNVKYM 114
                  5.799*******887 PP

  == domain 7    score: 8.5 bits;  conditional E-value: 8.7e-05
    TIGR02167  14 SnfdTsnVTnMs 25 
                   +++T++V +M 
  MMETSP1061-20121228|12226_1 129 GSWNTAKVYDME 140
                  69******9995 PP

  == domain 8    score: 4.2 bits;  conditional E-value: 0.002
    TIGR02167   1 MFsgCssLtsLDlSnfdTs 19 
                  MF++ + +++ +l+ +d+s
  MMETSP1061-20121228|12226_1 142 MFRNATIFNQ-PLDDWDVS 159
                  9999999999.******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1069.11
//
Query:       MMETSP1061-20121228|12230_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1997.84
//
Query:       MMETSP1061-20121228|12245_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 694.38
//
Query:       MMETSP1061-20121228|12244_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 803.93
//
Query:       MMETSP1061-20121228|12248_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 575.95
//
Query:       MMETSP1061-20121228|12246_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-12   45.4   0.1    1.5e-10   39.3   0.1    3.1  1  TIGR00347 bioD: dethiobiotin synthase
    5.7e-06   22.9   0.0    8.1e-06   22.4   0.0    1.1  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> TIGR00347  bioD: dethiobiotin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1   7.2e-14   1.5e-10       1     165 [.      23     232 ..      23     233 .. 0.78

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 7.2e-14
    TIGR00347   1 fvtGtDTevGKtvvssalakklkkagysvallKpvqtgiekta........eDaetlknlkateedldevtpyafkePlsPllaakeEgrkidleelekklk...................eleekedfllvEgaGglavPlt.eeltvadlikll....................qlevilVarvkLGtinhtlltvealrqkglklagvil 165
                  f+ G  T++GKtv + al+++  +a++s++      +g++++         +D + ++++    ++    t +  ++P sP++aa+ E++++  ee+  +l+                     +++   + +E aGg+ +P +      a++ + +                    +  ++l+   +LG i  tl+++ea+ ++  ++ g+++
  MMETSP1061-20121228|12246_1  23 FIFGANTDIGKTVLTAALIRASCEANCSSGGSGS-GSGSDTHYikplqcggSDESFIRKNAPNLSS--SKTLFDWDTPASPHIAARIENKPVSDEEVLMSLDnhlqslgntptvaaneiqvVSTSNPSSIWIETAGGVLSPSSsSPRNRAEYHARNhsrgnwgwvtqadlykalrdRSSIVLIGDGRLGGISATLASLEAMLHRNYNVSGIMM 232
                  899******************9999987765432.2222222234444544476777765444444..3456899*****************998887766666669999999998877544456677899**********985455666666655678889999999****9999999*******************************986 PP

>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     4e-09   8.1e-06     132     204 ..     194     270 ..     179     280 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4e-09
    TIGR00204 132 adekvvaviGdG...altaGma.lealnhaGdlkkdllvilndnemsisenvGalskalarllsgslyqslrdelkk 204
                  +d+  + +iGdG    ++a +a lea+ h   +   ++++ +dn  s+ +nv al++++a  +s+s ++sl ++ ++
  MMETSP1061-20121228|12246_1 194 RDRSSIVLIGDGrlgGISATLAsLEAMLHRNYNVSGIMMLRDDNSPSVDTNVEALKEYVASYRSSSSLSSLDSDENR 270
                  57889******8222467777659**********************************************9887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1622.98
//
Query:       MMETSP1061-20121228|12247_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.3e-133  441.2   4.2   7.4e-133  441.0   2.9    1.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    5.5e-81  270.6   0.7    7.7e-81  270.1   0.5    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    4.7e-80  267.6   0.8    6.1e-80  267.3   0.5    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
      3e-59  198.9   5.3    1.2e-58  196.9   3.4    1.8  1  TIGR03689 pup_AAA: proteasome ATPase
    1.2e-08   32.1   0.0    2.3e-08   31.2   0.0    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
    3.8e-08   30.2   0.0    5.6e-08   29.6   0.0    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    3.1e-06   23.8   1.3    3.7e-06   23.5   0.0    1.7  2  TIGR00763 lon: ATP-dependent protease La
    3.7e-06   24.0   0.0    6.2e-06   23.3   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    3.8e-06   24.0   0.0    6.4e-06   23.2   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    6.6e-06   23.0   0.3    0.00053   16.8   0.0    2.4  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    8.8e-06   22.7   0.8    0.00081   16.2   0.0    2.6  3  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
     0.0012   15.3   0.0     0.0016   14.8   0.0    1.3  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
     0.0013   16.2   0.1     0.0032   14.9   0.0    1.6  2  TIGR00678 holB: DNA polymerase III, delta' subunit
     0.0017   15.7   0.0      0.004   14.5   0.0    1.6  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0028   15.2   0.1      0.083   10.5   0.0    2.4  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
     0.0029   14.1   0.0     0.0059   13.1   0.0    1.4  1  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0037   13.7   0.5      0.013   12.0   0.0    1.9  2  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0078   12.3   0.1      0.061    9.3   0.0    2.2  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
  ------ inclusion threshold ------
      0.014   12.9   0.1      0.038   11.4   0.0    1.8  2  TIGR01351 adk: adenylate kinases
      0.015   12.7   0.0       0.97    6.7   0.0    2.9  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
      0.017   12.5   0.0      0.058   10.7   0.0    1.9  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.026   11.6   0.2      0.065   10.3   0.0    1.7  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  441.0   2.9    4e-135  7.4e-133       6     364 .]      28     385 ..      23     385 .. 0.97

  Alignments for each domain:
  == domain 1    score: 441.0 bits;  conditional E-value: 4e-135
    TIGR01242   6 ekirkledekkllekekirlereverlrselerlrsppllvavvvevlddervvvksstGpkfvvnvsk.fidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekvl 364
                  e +++   + + l++ + +l+ +v++lr+el++l++p   v+ vv+ +++++v+vk     k+vv++ k  +d k+l p +rval + ++++ ++lpt+ dplv  ++ve  p+ +y+ iGGlekq+ ei+e++elp+k+pelfe +G+  pkGvllyGppGtGktlla+ava++t+ tfirv g+elv+kyiGeG+r+vre+f +a+e apsiif+deid+i++ r     +Gd evqrt+l+ll +ldGf+p +n+kv+ atnr+dild allrpGr+dr ie p p+++ r+ i+kih+rkm+l  ++dl+ +a+    asGa+ ka++teaGmfa+re+r +vt+edf  av kv+
  MMETSP1061-20121228|12247_1  28 ETVQERLADLQRLKARRNELNAKVRMLREELHHLQEPGSYVGEVVKQMGQNKVLVKIHPEGKYVVDLDKsQVDIKDLVPNTRVALRNDSYTLHKILPTKVDPLVSLMKVEAVPDSTYDMIGGLEKQVMEIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRELFVMAREAAPSIIFMDEIDSIGSSRG--GGGGDSEVQRTMLELLNQLDGFEPAQNIKVVMATNRIDILDSALLRPGRIDRKIEFPNPNVDNRMAIMKIHSRKMNLLRNIDLKVIAEKMPNASGAECKAVCTEAGMFALRERRVHVTQEDFEMAVAKVM 385
                  5555555677889999**************************************************97537**********************************************************************************************************************************************************995..689*****************************************************************************************************************************97 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.1   0.5   4.1e-83   7.7e-81      51     298 ..     140     386 ..     131     396 .. 0.96

  Alignments for each domain:
  == domain 1    score: 270.1 bits;  conditional E-value: 4.1e-83
    TIGR01241  51 vkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrvia 298
                  +  t++ + G++++  e++e+++  +k+p+ f++lG   PkGvll+GpPGtGktLla+ava   +  f+++sG+++v+ ++G G+  vr+lf  a+++aP+iif+DeiD++G++rg   ggg +e+++t+  lL ++DGfe ++++ v+ atnr d+LD+aLlrPGr Dr++   +P++ +r +i+k+h++k++l +++dlk +a++ p +sGa+ + ++ ea ++a r+++ +vt++++e av +v+ 
  MMETSP1061-20121228|12247_1 140 PDSTYDMIGGLEKQVMEIKEVIELpIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRELFVMAREAAPSIIFMDEIDSIGSSRGG--GGGDSEVQRTMLELLNQLDGFEPAQNIKVVMATNRIDILDSALLRPGRIDRKIEFPNPNVDNRMAIMKIHSRKMNLLRNIDLKVIAEKMPNASGAECKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMK 386
                  56688999***************879*****************************************************************************************98..7999***************************************************************************************************************************985 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  267.3   0.5   3.3e-82   6.1e-80     396     694 ..      80     386 ..      49     394 .. 0.91

  Alignments for each domain:
  == domain 1    score: 267.3 bits;  conditional E-value: 3.3e-82
    TIGR01243 396 alrrllregk..idleaeeip.kevleelkvtkkdfkealkmvepsalrev....lve.vpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekeilk 694
                  +l ++ +egk  +dl+  ++  k+++ + +v+ ++   +l+++ p+ +  +     ve vp+  ++ iggle+   e++e +e p+k++e+fe lg+  pkgvll+gppgtgktlla+ava  ++  fi v g e++ k++ge  + +re+f  ar+aap+iif+deid+i  +rg   +++  +r + +ll +ldg+e+ +++ v+ atnr dild allrpgr+dr i  p p+ + r+ i+kih+r+++l  ++dl+ +a+k    +ga+ +av+ ea + alre    v++e +e    +++k
  MMETSP1061-20121228|12247_1  80 VLVKIHPEGKyvVDLDKSQVDiKDLVPNTRVALRNDSYTLHKILPTKVDPLvslmKVEaVPDSTYDMIGGLEKQVMEIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGSRMVRELFVMAREAAPSIIFMDEIDSIGSSRGGGGGDSEVQRTMLELLNQLDGFEPAQNIKVVMATNRIDILDSALLRPGRIDRKIEFPNPNVDNRMAIMKIHSRKMNLLRNIDLKVIAEKMPNASGAECKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMK 386
                  666777777643466655554367778899999988889999999876543111146559*************************************************************************************************************************9999****************************************************************************************************************9987666655 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.9   3.4   6.6e-61   1.2e-58     109     380 ..      68     329 ..      29     393 .. 0.84

  Alignments for each domain:
  == domain 1    score: 196.9 bits;  conditional E-value: 6.6e-61
    TIGR03689 109 ivtlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavpkseveelv....leevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsG.vssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylte 380
                  + ++++ ++++++lv  + + ++vv l ++ ++ k  + ++ ++ ++  + l+++  ++v+ lv    +e vPd ty+ iGGl++q+ +i++ +elP +h+el++  ++  PkGvllyGPPG+Gktl+a+ava           ++   f+ + G el++ky+Ge  r +r +f  are+a    P ++f+de+ds+   rG G   s+v+ t++  ll +ldG e  +n+ v+ a+nr d++d a+lrPGr+d ki    P+ ++  +i++ +  +
  MMETSP1061-20121228|12247_1  68 VGEVVKQMGQNKVLVKIHPEGKYVVDLDKSQVDIKDLVPNTRVALRNDSYTLHKILPTKVDPLVslmkVEAVPDSTYDMIGGLEKQVMEIKEVIELPIKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVAH----------HTDCTFIRVSGAELVQKYIGEGSRMVRELFVMAREAA----PSIIFMDEIDSIGSSRGGGgGDSEVQRTML-ELLNQLDGFEPAQNIKVVMATNRIDILDSALLRPGRIDRKIEFPNPNVDNRMAIMKIHSRK 329
                  34567788999******************99999888888888889999***********9998766689**************************************************************95..........46789*****************************987....99**************87516799999987.7*********************************************999999988776543 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   1.3e-10   2.3e-08      44     195 ..     181     329 ..     144     358 .. 0.71

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 1.3e-10
    TIGR02881  44 hmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideaysl..ar...GGekdfGkeaidtlvkeme..dkreelvlilaGysdemdyflslnPGlksrfpisldfpdytveelleiakkmveere 195
                   +++ G PGtGkt +ar +a+        +   +i v  a+lv +yiG+ ++ +re+    ++a   ++f+de  s+  +r   GG+ +  +  ++ l + ++  +  +++ +++a  + ++     l PG   r+  +++fp+ +v++ ++i+k  ++ r+
  MMETSP1061-20121228|12247_1 181 GVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGAELVQKYIGEGSRMVRELFvmaREAAPSIIFMDEIDSIgsSRgggGGDSEVQRTMLELLNQ-LDgfEPAQNIKVVMATNRIDILDSALLRPG---RIDRKIEFPNPNVDNRMAIMK--IHSRK 329
                  45778*************9985.......56789**********************7533378899*******999854673223567777777766644.331245567777777766555444446777...88889**********999987..34444 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     3e-10   5.6e-08     287     397 ..     153     261 ..     145     332 .. 0.71

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 3e-10
    TIGR03922 287 qvaalkssvevalvRae..rGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktneli...dkaLggvlFlDEayaLvek.rdgakdd 397
                  qv  +k+ +e+ +   e    l vaq  k +ll GPPGtGkt +Ar+va+           + + vs a+l+ +yige      el     +a   ++F+DE+ ++ +  + g +d 
  MMETSP1061-20121228|12247_1 153 QVMEIKEVIELPIKHPElfESLGVAQ-PKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGAELVQKYIGEGSRMVRELFvmaREAAPSIIFMDEIDSIGSSrGGGGGDS 261
                  55555555555554443224566765.57899*****************864.......4466779**************9999976222567789*******99988723344444 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1       1.2   2.2e+02     210     266 ..      24      79 ..      15     111 .. 0.62
   2 !   23.5   0.0     2e-08   3.7e-06     354     438 ..     180     256 ..     147     284 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 1.2
    TIGR00763 210 aklqekiakkveeklekeqreylLkeqlkaikkElGeekdkkdelieklkekleelk 266
                  ++l+e++++++ +  + + r+  L+ +++++++El + ++  + +  ++ +++ ++k
  MMETSP1061-20121228|12247_1  24 SELSETVQERLADLQRLKARRNELNAKVRMLREELHHLQEPGSYV-GEVVKQMGQNK 79 
                  444455555544444445556667777777777776654444333.55555555544 PP

  == domain 2    score: 23.5 bits;  conditional E-value: 2e-08
    TIGR00763 354 kilclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqgl.kkvktenP.lillDEiDKlgssvrG 438
                  k + l+GPPG GKt la+++A+ ++ +f+r+s  G    ae+    + Y+G    +++  l   ++ + P +i++DEiD +gss  G
  MMETSP1061-20121228|12247_1 180 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS--G----AELV---QKYIGE-GSRMVRELfVMAREAAPsIIFMDEIDSIGSSRGG 256
                  55789*************************99..3....4443...579997.5688887724556666747789999999966544 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   3.3e-08   6.2e-06     119     195 ..     181     251 ..     172     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 3.3e-08
    TIGR00382 119 nilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkia 195
                   +ll Gp G+Gktlla+++a++ d  f     + l +  y+Ge    ++ +l+       ++a   ii++deid i 
  MMETSP1061-20121228|12247_1 181 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQ-KYIGEGSR-MVRELFVM----AREAAPSIIFMDEIDSIG 251
                  589***********************99888888876.6****864.44555544....578999*********996 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   3.4e-08   6.4e-06      29      93 ..     178     250 ..     153     254 .. 0.67

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 3.4e-08
    TIGR00635  29 aldhvllyGPPGlGkttlakiiakelgvklkitsgpal.ekp....gDlaailtal...eegdvlfiDeihrl 93 
                  +   vllyGPPG Gkt la+ +a+  + +   +sg +l +k     + ++  l  +    + +++f+Dei  +
  MMETSP1061-20121228|12247_1 178 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELvQKYigegSRMVRELFVMareAAPSIIFMDEIDSI 250
                  56789********************998765555555415533222445544444411134579999998765 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.9e-06   0.00053      37      62 ..     176     201 ..     140     212 .. 0.88
   2 ?    3.9   0.1     0.023       4.3     131     277 ..     240     386 ..     224     396 .. 0.70

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.9e-06
    TIGR02928  37 gsrpsnvliyGktGtGKtavtkkvlk 62 
                    +p+ vl+yG++GtGKt+ +++v +
  MMETSP1061-20121228|12247_1 176 VAQPKGVLLYGPPGTGKTLLARAVAH 201
                  579******************99976 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.023
    TIGR02928 131 liivLDEiDklvkkeade........lLyeLsraeengdlekakvsvigisndlkfleeldervksslseeeivFppYdaeeLrdILeeRaekafkdgvlddeviplvaalaaqehGdaRkAidlLreageiAeeegsekvteehvekAqekiek 277
                   ii +DEiD++ ++ +          ++ eL+    +g    +++ v+  +n +++l++     +   ++++i+Fp+ + ++  +I++  ++   k + l +  ++ +a+   + +G   kA+    eag  A +e + +vt+e+ e+A  k+ k
  MMETSP1061-20121228|12247_1 240 SIIFMDEIDSIGSSRGGGggdsevqrTMLELLNQL-DGFEPAQNIKVVMATNRIDILDSAL--LRPGRIDRKIEFPNPNVDNRMAIMKIHSR---KMNLLRNIDLKVIAEKMPNASGAECKAVC--TEAGMFALRERRVHVTQEDFEMAVAKVMK 386
                  56778888888533322255566666555554442.3333335778888888887777543..34555788888888888888888887776...66788888888888888888898888874..699999************99999999855 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.6     3e+02     182     237 ..      15      67 ..       7     101 .. 0.62
   2 !   16.2   0.0   4.4e-06   0.00081      46     101 ..     178     231 ..     170     237 .. 0.86
   3 ?    4.3   0.0     0.018       3.3     249     282 ..     240     270 ..     232     276 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.6
    TIGR00390 182 ieilappeleevdenlqsllqnllsdkkkkrklkvkeakkvlieeeaeklvdseei 237
                  +  + ++++ e++e +q+ l +l   k ++ +l   +ak  ++ ee+++l ++   
  MMETSP1061-20121228|12247_1  15 MATYYASKVSELSETVQERLADLQRLKARRNEL---NAKVRMLREELHHLQEPGSY 67 
                  555667788888888888888885444444444...34444555566666655544 PP

  == domain 2    score: 16.2 bits;  conditional E-value: 4.4e-06
    TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlv 101
                   Pk +l+ G+ G Gkt +ar +a  ++  fi+v  +   +  y+G     +vr+l 
  MMETSP1061-20121228|12247_1 178 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQ-KYIGE-GSRMVRELF 231
                  69*******************************9998875.58885.456888775 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.018
    TIGR00390 249 GiifideidkiakkgessgadvsreGvqrdllPi 282
                   iif+deid i  +    g d     vqr +l +
  MMETSP1061-20121228|12247_1 240 SIIFMDEIDSIGSSRGGGGGDS---EVQRTMLEL 270
                  69*********99886666664...478877766 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   8.5e-06    0.0016     161     196 ..     165     200 ..      19     213 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 8.5e-06
    TIGR02903 161 raikallaklaspfpqhiilyGppGvGkttaarlal 196
                  +    l+  l    p+ ++lyGppG Gkt  ar + 
  MMETSP1061-20121228|12247_1 165 IKHPELFESLGVAQPKGVLLYGPPGTGKTLLARAVA 200
                  44456777788889******************9875 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       6.8   1.3e+03     126     151 ..      13      38 ..       8      59 .. 0.58
   2 !   14.9   0.0   1.7e-05    0.0032      14      41 ..     179     206 ..     175     225 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 6.8
    TIGR00678 126 ktlflLisespekllpTirSRcqrls 151
                  ++++   ++++++l +T++ R   l+
  MMETSP1061-20121228|12247_1  13 SSMATYYASKVSELSETVQERLADLQ 38 
                  44555566666777777776655444 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 1.7e-05
    TIGR00678  14 ahAlLfaGpeGvGkealaealakallCe 41 
                  ++ +L++Gp+G+Gk+ la+a+a+++ C+
  MMETSP1061-20121228|12247_1 179 PKGVLLYGPPGTGKTLLARAVAHHTDCT 206
                  5789**********************98 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.1e-05     0.004      24      56 ..     182     214 ..     174     232 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.1e-05
    TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                  v l GP GtGkt la++va++ d   + + G +
  MMETSP1061-20121228|12247_1 182 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAE 214
                  7799*******************9999999965 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.16        29     109     142 ..      37      71 ..      28      91 .. 0.78
   2 !   10.5   0.0   0.00044     0.083       2      27 ..     183     208 ..     182     218 .. 0.89

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.16
    TIGR01313 109 lkRlksRkghf.mkadllesqfeaLeeptadekdv 142
                  l+Rlk+R++    k+ +l   ++ L+ep++   +v
  MMETSP1061-20121228|12247_1  37 LQRLKARRNELnAKVRMLREELHHLQEPGSYVGEV 71 
                  78999988875379**************8754444 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00044
    TIGR01313   2 vlmGvaGsGkstiakelakklgakfi 27 
                  +l G+ G+Gk+ +a+++a++ +++fi
  MMETSP1061-20121228|12247_1 183 LLYGPPGTGKTLLARAVAHHTDCTFI 208
                  578*********************98 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.2e-05    0.0059      81     108 ..     174     201 ..     159     208 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.2e-05
    TIGR02902  81 lcGpnpqhviiyGppGvGktaaarlvle 108
                  l    p+ v++yGppG Gkt  ar v +
  MMETSP1061-20121228|12247_1 174 LGVAQPKGVLLYGPPGTGKTLLARAVAH 201
                  556789******************9865 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.79   1.5e+02     402     430 ..      24      52 ..      10      75 .. 0.75
   2 !   12.0   0.0   6.7e-05     0.013     209     231 ..     177     199 ..     170     203 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.79
    TIGR00368 402 gessaevkqrvlkareiqikraekdakis 430
                   e s++v++r++  + ++ +r e +ak+ 
  MMETSP1061-20121228|12247_1  24 SELSETVQERLADLQRLKARRNELNAKVR 52 
                  57788888888888888888887777765 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 6.7e-05
    TIGR00368 209 aGghnllllGPPGsGktllakrl 231
                  a    +ll GPPG+Gktlla+ +
  MMETSP1061-20121228|12247_1 177 AQPKGVLLYGPPGTGKTLLARAV 199
                  5566799*************986 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00032     0.061     486     526 ..     179     218 ..     174     228 .. 0.85
   2 ?    1.0   0.0      0.11        20     257     302 ..     218     263 ..     216     330 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00032
    TIGR02639 486 PvgsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                  P g+ l +Gp G Gkt la+++a++   +++r   +e   k
  MMETSP1061-20121228|12247_1 179 PKGV-LLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQK 218
                  6665.557************************998888777 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.11
    TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivgagatsggslda 302
                  ky G+  + ++e+    ++    i+f+Dei  i ++  ++gg  ++
  MMETSP1061-20121228|12247_1 218 KYIGEGSRMVRELFVMAREAAPSIIFMDEIDSIGSSRGGGGGDSEV 263
                  66666666677777777778888********998777777776554 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       7.7   1.4e+03     102     122 ..     152     172 ..     149     174 .. 0.78
   2 ?   11.4   0.0    0.0002     0.038       2      44 ..     182     226 ..     181     234 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 7.7
    TIGR01351 102 elglkldavielkvpdevlve 122
                  ++ ++++ viel +++ +l+e
  MMETSP1061-20121228|12247_1 152 KQVMEIKEVIELPIKHPELFE 172
                  456789999999999988876 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.0002
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklg..lvhistGdllRaevkkktel 44 
                  ++l GpPG+GK   a+ +a++++  + ++s  +l+ + + +++ +
  MMETSP1061-20121228|12247_1 182 VLLYGPPGTGKTLLARAVAHHTDctFIRVSGAELVQKYIGEGSRM 226
                  6899**************988762266788888888888877766 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       2.4   4.4e+02     109     139 ..     125     155 ..     115     163 .. 0.81
   2 ?    6.7   0.0    0.0052      0.97      22      64 ..     175     215 ..     170     232 .. 0.80
   3 ?    2.2   0.0      0.13        24     103     167 ..     321     386 ..     305     391 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 2.4
    TIGR00968 109 akveellelvqleklgdrypsqlsGGqrqrv 139
                   kv+ l++l+++e + d+  + + G ++q +
  MMETSP1061-20121228|12247_1 125 TKVDPLVSLMKVEAVPDSTYDMIGGLEKQVM 155
                  6899999999999999998888888788766 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0052
    TIGR00968  22 evktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdv 64 
                   v + + v l Gp G+Gk+ l r++a  ++ d   i+++G + 
  MMETSP1061-20121228|12247_1 175 GVAQPKGVLLYGPPGTGKTLLARAVA--HHTDCTFIRVSGAEL 215
                  5666677889*************999..467777777777765 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.13
    TIGR00968 103 dkakikakveellelvqleklgdrypsqlsGGqrqrvalaralav.epqvllldepfgaldakvrk 167
                    +ki+ +  +ll+ ++l+ ++++ p+      +   + a  +a+ e +v + +e f    akv k
  MMETSP1061-20121228|12247_1 321 AIMKIHSRKMNLLRNIDLKVIAEKMPNASGAECKAVCTEAGMFALrERRVHVTQEDFEMAVAKVMK 386
                  5578899999****************9754444555556777777356788888888888888766 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       4.4   8.3e+02       8      32 ..       9      33 ..       5      45 .. 0.69
   2 ?   10.7   0.0   0.00031     0.058      36     102 ..     177     250 ..     168     291 .. 0.63

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 4.4
    TIGR03420  8 lkedatldnFlagenaellaalrel 32
                 +++++++++++a++ +el ++++e 
  MMETSP1061-20121228|12247_1  9 PPQNSSMATYYASKVSELSETVQER 33
                 5667778888888888777777764 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00031
    TIGR03420  36 kaerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaqll..........vevlegleqaelvalDdveal 102
                   + + + l+G++g+Gk+ L +A+++++    ++ i ++ +el+q            + v++   + +++ +D+++++
  MMETSP1061-20121228|12247_1 177 AQPKGVLLYGPPGTGKTLLARAVAHHTD---CTFIRVSGAELVQKYigegsrmvreLFVMAREAAPSIIFMDEIDSI 250
                  6677899****************99764...3333333333333221111111111233444455556666666666 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       5.2   9.7e+02     257     262 ..      45      50 ..      14      98 .. 0.53
   2 ?   10.3   0.0   0.00035     0.065      39      63 ..     182     206 ..     177     212 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 5.2
    TIGR02397 257 kdleea 262
                  ++l++ 
  MMETSP1061-20121228|12247_1  45 NELNAK 50 
                  222222 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00035
    TIGR02397  39 yLfsGprGvGKTsiArilAkalNCe 63 
                   L++Gp G+GKT +Ar +A+   C+
  MMETSP1061-20121228|12247_1 182 VLLYGPPGTGKTLLARAVAHHTDCT 206
                  699*****************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       316  (0.0770356); expected 82.0 (0.02)
Passed bias filter:                      239  (0.0582643); expected 82.0 (0.02)
Passed Vit filter:                        62  (0.0151146); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.49
# Mc/sec: 1077.46
//
Query:       MMETSP1061-20121228|12251_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-09   32.8   0.0    1.4e-08   32.1   0.0    1.3  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
    5.1e-06   24.6   0.7    1.2e-05   23.4   0.0    1.8  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0002   18.8   0.1    0.00037   17.8   0.0    1.5  2  TIGR00406 prmA: ribosomal protein L11 methyltransferase
     0.0011   16.4   0.1     0.0018   15.7   0.0    1.4  1  TIGR02081 metW: methionine biosynthesis protein MetW
     0.0011   16.3   0.0     0.0017   15.7   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0074   13.4   0.0      0.011   12.9   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0084   14.4   0.0      0.014   13.7   0.0    1.4  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
     0.0088   14.0   0.0      0.013   13.4   0.0    1.3  1  TIGR03587 Pse_Me-ase: pseudaminic acid biosynthesis-associated methylase
  ------ inclusion threshold ------
      0.032   10.5   0.0      0.043   10.1   0.0    1.2  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
      0.033   11.4   0.0      0.052   10.8   0.0    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   3.5e-11   1.4e-08      15      78 ..      97     161 ..      83     172 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 3.5e-11
    TIGR00091  15 nkkplvleiGcGkGrfliklAkqnpeknflGiEiekpivlkainkaeklglk.Nlkvlcgdakkl 78 
                   k  ++ ++GcG Gr l   A + p   ++GiEie++ v ka + +++++l+  + +   da+k 
  MMETSP1061-20121228|12251_1  97 GKDDILFDLGCGDGRVLCFAATNTPGLRCVGIEIEEQYVTKARELVKHNNLEsRIDIRLEDATKA 161
                  577899******************************************99987788888888765 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.1       1.2   4.9e+02      55      88 ..      11      43 ..       7      56 .. 0.66
   2 !   23.4   0.0   2.9e-08   1.2e-05       5      81 ..      84     161 ..      80     179 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 1.2
    TIGR02469 55 alelieeNlrrfgvsnieivegdap..kaeedslee 88
                 ++eli+ N ++  + +  iv  +++  ++    +++
  MMETSP1061-20121228|12251_1 11 SVELIQTNQNKILLFHLSIVVHSFEasSMR---VDD 43
                 688999999999887777777666533222...223 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 2.9e-08
    TIGR02469   5 eevRaltLakLrlkkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrf.gvsnieivegdapka 81 
                   +++ l++a + l k+d l D G+G G v   aa   p +r ++ie +e++++  +e ++++   s+i+i  +da ka
  MMETSP1061-20121228|12251_1  84 YQIQQLAVAMMDLGKDDILFDLGCGDGRVLCFAATNTPGLRCVGIEIEEQYVTKARELVKHNnLESRIDIRLEDATKA 161
                  67899999************************************************9999986788999999988743 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0         3   1.2e+03     173     201 ..      27      55 ..      26      61 .. 0.72
   2 !   17.8   0.0   9.1e-07   0.00037     157     220 ..      95     160 ..      80     170 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3
    TIGR00406 173 LsiaalklgaakvvavDiDplavesarkN 201
                  Lsi +   +a+++   D D + v++  + 
  MMETSP1061-20121228|12251_1  27 LSIVVHSFEASSMRVDDDDEVDVKNNCDE 55 
                  67888888888888888888877766555 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 9.1e-07
    TIGR00406 157 dl.kdkkviDvGcGSG.iLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklenleq 220
                  dl kd+ + D+GcG G +L  aa+     + v+++i+ + v +ar+ ++ N+++ ++ + le+ ++
  MMETSP1061-20121228|12251_1  95 DLgKDDILFDLGCGDGrVLCFAATNTPGLRCVGIEIEEQYVTKARELVKHNNLESRIDIRLEDATK 160
                  442678899*******89************************************999998886555 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   4.4e-06    0.0018      17      52 ..     102     138 ..      90     176 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4.4e-06
    TIGR02081  17 vLDlGcGdGeLLall.rdekqvegaGleideenvlac 52 
                    DlGcGdG++L    +++  ++  G+ei+e++v+++
  MMETSP1061-20121228|12251_1 102 LFDLGCGDGRVLCFAaTNTPGLRCVGIEIEEQYVTKA 138
                  57********99765157789999*********9876 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     4e-06    0.0017      91     151 ..     101     162 ..      84     172 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 4e-06
    TIGR03534  91 kvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdlleal 151
                   ++Dlg+G G + +  a + p ++ ++++i+e+ ++ ar+ +k+++l++ +++   d ++a+
  MMETSP1061-20121228|12251_1 101 ILFDLGCGDGRVLCFAATNTPGLRCVGIEIEEQYVTKARELVKHNNLESrIDIRLEDATKAV 162
                  578********************************************999999988888877 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.6e-05     0.011      52     108 ..     101     160 ..      68     169 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.6e-05
    TIGR01983  52 kvlDvGcGgG.llsesla.rlgaevtgiDlseelievAklhakkdplk.kieyelksvee 108
                   + D+GcG G +l+ + +   g+  +gi++ e+ ++ A++  k+++l+ +i+ +l+++ +
  MMETSP1061-20121228|12251_1 101 ILFDLGCGDGrVLCFAATnTPGLRCVGIEIEEQYVTKARELVKHNNLEsRIDIRLEDATK 160
                  467*****8867776655156899***********************9888888777655 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   3.5e-05     0.014       2      51 ..     102     152 ..     101     194 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 3.5e-05
    TIGR01444   2 viDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlkn.vk 51 
                  ++D G+  G v +++a ++++ r + +E + + ++k++e vk nnl+  ++
  MMETSP1061-20121228|12251_1 102 LFDLGCGDGRVLCFAATNTPGLRCVGIEIEEQYVTKARELVKHNNLESrID 152
                  79********************************************86644 PP

>> TIGR03587  Pse_Me-ase: pseudaminic acid biosynthesis-associated methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.2e-05     0.013      31      96 ..      86     151 ..      67     201 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.2e-05
    TIGR03587  31 lalfaralkrlskiasilelGaniGlnlkalkrllpkkelyaveinesaveklkaylkeinviqgs 96 
                  ++  a a+  l+k++ + +lG+  G  l    +  p ++  ++ei+e+ v+k+++ +k+ n+ +  
  MMETSP1061-20121228|12251_1  86 IQQLAVAMMDLGKDDILFDLGCGDGRVLCFAATNTPGLRCVGIEIEEQYVTKARELVKHNNLESRI 151
                  555677888999****************9999999********************99999875443 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0001     0.043     284     340 ..     100     156 ..      54     170 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0001
    TIGR04074 284 rsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqrerve 340
                    + DlGcG+g++l   ++++   + vg+++  + ++ka++ +k ++l+ +   r+e
  MMETSP1061-20121228|12251_1 100 DILFDLGCGDGRVLCFAATNTPGLRCVGIEIEEQYVTKARELVKHNNLESRIDIRLE 156
                  3467*************************************9999988877666655 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00013     0.052      56     111 ..     100     157 ..      85     167 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
    TIGR02021  56 kkvlDAGCGtGllsielAkr..GaivkavDiseklvelarkraekedeaenveFevnd 111
                    + D GCG G +    A +  G + ++++i e+ v +ar+  ++++   +++   +d
  MMETSP1061-20121228|12251_1 100 DILFDLGCGDGRVLCFAATNtpGLRCVGIEIEEQYVTKARELVKHNNLESRIDIRLED 157
                  5688*******87655554334*******************99999888888776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.19u 0.10s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|12252_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.8    5.9   8.6       0.22    9.8   0.1    3.0  3  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.39   1.6e+03      12      20 ..      31      39 ..      28      46 .. 0.57
   2 ?    9.8   0.1   5.4e-05      0.22       3      29 .]      90     117 ..      89     117 .. 0.88
   3 ?   -0.3   1.3     0.088   3.6e+02      11      20 ..     117     126 ..     113     131 .. 0.63

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.39
    TIGR01409 12 aagaaaglg 20
                 ++++++++ 
  MMETSP1061-20121228|12252_1 31 TTTVLLACL 39
                 555555553 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 5.4e-05
    TIGR01409   3 RRdFLkaaaaagaaaglgl.llpsparA 29 
                  RR+FL+++a+   aa ++l  lp  a A
  MMETSP1061-20121228|12252_1  90 RRSFLGKLAMIQIAALPSLsTLPTTAQA 117
                  ***********99999999988888776 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.088
    TIGR01409  11 aaagaaaglg 20 
                  a +ga+ag++
  MMETSP1061-20121228|12252_1 117 ASGGATAGGA 126
                  6666666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1039.41
//
Query:       MMETSP1061-20121228|12253_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-10   37.3   1.9    3.6e-06   24.5   0.0    3.0  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.2   3.1e-05      0.13      12      25 ..       5      18 ..       2      19 .. 0.88
   2 !   24.5   0.0   8.8e-10   3.6e-06       1      25 [.      20      43 ..      20      44 .. 0.97
   3 ?    1.5   0.0     0.014        55       1      10 [.      45      54 ..      45      58 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.1e-05
    TIGR02167 12 DlSnfdTsnVTnMs 25
                 ++ +++T nV +M+
  MMETSP1061-20121228|12253_1  5 PIGSWNTQNVLDMN 18
                 688*******9996 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 8.8e-10
    TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                 MF+g  s+++ ++ +++T +VT M+
  MMETSP1061-20121228|12253_1 20 MFQGAPSFNQ-PIGSWNTQSVTSMR 43
                 **********.*************6 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.014
    TIGR02167  1 MFsgCssLts 10
                 MF+  ss+++
  MMETSP1061-20121228|12253_1 45 MFYQASSFNQ 54
                 9999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.07u 0.16s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 409.86
//
Query:       MMETSP1061-20121228|12249_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.15s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 207.41
//
Query:       MMETSP1061-20121228|12256_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 755.52
//
Query:       MMETSP1061-20121228|12255_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-10   35.7   0.0    6.4e-10   35.3   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.4e-05   20.9   0.0    8.6e-05   19.9   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
  ------ inclusion threshold ------
      0.037   11.6   0.4      0.071   10.6   0.3    1.4  1  TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   4.7e-13   6.4e-10       7     162 ..     349     490 ..     343     524 .. 0.81

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 4.7e-13
    TIGR03903   7 aikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGiga.LlpgvedadeatltrttevlGsPaYaaPeqLR 162
                  a+k++ ++  + ++       e ++ a+++ P +v+L  s ++ +  +F v +++ G  l   L+++G+ p  e     + ++ +l a hd+G v+RDLkP+n++++  +     k+ D G+++ + p+ +            + G+  Y aPe LR
  MMETSP1061-20121228|12255_1 349 AMKVMNKKRIKIKKSESSALNERKALAAVESPFVVNLKYSFQSTE-EIFLVLDLMTGGDLSYHLQQKGSFPLRECRYYAARIMLGLQALHDKGYVYRDLKPENLLLAEDGR---VKITDLGLATkITPDLKG-----------LAGTRGYWAPEMLR 490
                  7788887777777777777788899999*********99999887.89**********************************************************98774...7999***99835566665...........34555555555555 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.3e-08   8.6e-05      44     138 ..     361     469 ..     331     477 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 6.3e-08
    TIGR03724  44 trkEarllseakk.agvntPvvydvd.....peekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                   ++E+ +l+e k  a v++P v++++     +ee  +v++ + g +l++ l++k          ++ ++   +  lH++g v+ Dl ++N+++ +d+++ + D+GL+ k
  MMETSP1061-20121228|12255_1 361 KKSESSALNERKAlAAVESPFVVNLKysfqsTEEIFLVLDLMTGGDLSYHLQQKGSfplrecrYYAARIMLGLQALHDKGYVYRDLKPENLLLaEDGRVKITDLGLATK 469
                  45566666554442568888887665222224677899**************9988999987777788888899******************95688999******975 PP

>> TIGR01491  HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.3   5.2e-05     0.071      48      95 ..     103     158 ..      92     165 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 5.2e-05
    TIGR01491  48 sYeewlrl....DvelWlrasgrlkreevaei....lkeiklrdeaeevvrlLkek 95 
                  s+ +w+r+    Dv  W r++gr +re+ + i    lkei++ d +   +  Lk+k
  MMETSP1061-20121228|12255_1 103 SFDDWMRInfieDVIKWRRMRGRQRRERAKRIaekyLKEIPVDDASGKRIYPLKKK 158
                  68889986555599************987665444589******999988888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.25s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 2678.60
//
Query:       MMETSP1061-20121228|12257_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-33  110.9   0.0    1.1e-32  110.6   0.0    1.1  1  TIGR00283 arch_pth2: peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> TIGR00283  arch_pth2: peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.6   0.0   2.6e-36   1.1e-32       2     114 ..      71     182 ..      70     183 .] 0.94

  Alignments for each domain:
  == domain 1    score: 110.6 bits;  conditional E-value: 2.6e-36
    TIGR00283   2 kqvivvrddlklgkGklaaqaahaaisafkkaatkneslvrkWleeGqkkvvlkvkskeelleiyakakslGlsaalvrdaGrtqiaaGtitalgi.GPdedekidkitGdlkl 114
                  k+v+vv ++l++gkGk+aaq++ha++ ++k+a++  ++  r W+  G +k+ lk++ +ee+  i+ ka + Gl+ +lv+daGrtqiaaG+ t+lgi GP    + + +t +lkl
  MMETSP1061-20121228|12257_1  71 KMVLVVNQELGMGKGKIAAQCGHASVGCYKRASKMCPKGLRAWEYTGCAKIALKCPTEEEMRRIFDKAVERGLPLYLVEDAGRTQIAAGSRTVLGIlGPT--YVFEGLTSQLKL 182
                  9*********************************************************************************************974775..567777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1271.26
//
Query:       MMETSP1061-20121228|12261_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                      247  (0.0602145); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|12262_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 1257.04
//
Query:       MMETSP1061-20121228|12254_1  [L=1354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   34.4 184.8     0.0003   16.5  28.8    3.8  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      9e-05   18.1  52.5      9e-05   18.1  36.4    4.2  4  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0  46.0   5.1e-05       0.1     216     519 ..     310     618 ..     303     628 .. 0.85
   2 !   13.9  40.8   8.8e-07    0.0018     239     491 ..     583     828 ..     581     837 .. 0.71
   3 !   13.2  24.8   1.4e-06    0.0028     306     503 ..     769     962 ..     765     972 .. 0.75
   4 !   16.5  28.8   1.4e-07    0.0003     670     928 ..     920    1176 ..     906    1227 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 5.1e-05
    TIGR02168 216 kelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleelesk..keeleeelaeleeeleelkeelesleaeleeaeaeleelesrleele....eeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeel.eeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksk 519
                  k++++elr+++++l     +el e+ ++++ ++ +++++ ++l+++ ++le+e  + r  ++e  ++++ lq+e+++lka +++ +q++ +l e+ e+le+e+ ++ + +++l+++   + ++e +a++ e+  + k+ l+ ++ +++++e++++e+e +++ ++    +e+e++ s++ el+ + ++l+ +l r e e e++++  ++++++  + +k++e+ +++++ l++++++++  le  ++++ +le+ l+e    e e+ e+  ++++e+++q+q+r+e+  + +e+le+ + ++++ lk++ +
  MMETSP1061-20121228|12254_1 310 KQIQRELRSTKAKLDK-ATTELSERERKFTLQYGAEQSKASALQKQKDMLENECLNARIIQEEQTQKIQLLQQEVKTLKALQDTHNQKKTMLIEKIEALEQEKINARNAIDDLDQEssAKIKKELTAAMIEQEIKYKAMLQGEQRKIDNLEKQAREAELTQRHYTmallQEHETEVSKFEELTARFKTLEGQL-RREIENERTKRIMAQQDSQGAAYKKAVEDEKEKVAFLEAHITKVNDLLEAEQKRFIELEAILKETlAIENEQREEMETEFREKESQYQSRIEIEGQKREQLENAYTDIAEKLKAEIE 618
                  7888999998888764.56778888889999**********************************************************************99999888876554410445556666666677778999999999999999999999888776542222788899999999999999999999.668899999999999999999999***********************************998765155666666667899***********************99999998887755 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 8.8e-07
    TIGR02168 239 eeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqa 491
                  e+ +++++ ++ + +++e+le++ + + e+l+   ++ + l++   el+kel++ +++i++l++    + e++++leke+e+++    +  +++ +++  l++ e +++el+e+l+++++ l+++++ +++l+++le+l++ ++++ ++++++ee +++++++le+l a+++ le  ++  k++  e+++kl+++e e ++l++ le ++ + e+l++++e+l+  le  +++++ +e+  +  +++++q+++
  MMETSP1061-20121228|12254_1 583 EKESQYQSRIEIEGQKREQLENAYTDIAEKLKAEIEKTAGLQAYELELKKELKSDQEKIAELQK---LQVESEKSLEKEKERVK----KMAETEANSRLLLKTEELKVKELEEKLNDMQKLLDSERKSVQDLKDELESLQALYDKEVEKIKNVEEAERAARSDLESLTAKVSTLEVVESTIKTKADEESSKLKATEDECRDLKAMLEAEKDQVEKLTKSQEELRDLLEAEKKKVQSLEEMDEMNSQDMSQASS 828
                  4444555555555555555555555555555555555555555555555555555555555543...23333334555555555....444444444555555556677999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988888877777666777777665 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 1.4e-06
    TIGR02168 306 ilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenl 503
                   ++++ ++l++ le+ ++q+e+l +++eel++ l++ ++++++l+e  e  ++++++    +   e++l e+++ ++  + +v ele + + l++ele  +++ ++le+++ + ++e ee+++k+e + +e  e+q  l++++ ++ e++ + +++ e+l   +e++ e+++ +++a+ +++++ ++++sle+ +e+ 
  MMETSP1061-20121228|12254_1 769 ATEDECRDLKAMLEAEKDQVEKLTKSQEELRDLLEAEKKKVQSLEEMDEMNSQDMSQ----ASSIEEKLMEQQAIIDHHKYRVTELEGEHDVLTKELEAEKESSTRLEHTVVEKEAELEEEREKFEVLLKEHGEIQLALSTERSKILEAQGRANAFGEQLYFEKESISEMQRMVDQAKIDFESKVEEVASLEEEEEQG 962
                  445555566666666666666666666666666666666666665544444444444....67888888888888899999999999999999999999999999999999999999999999999889999999999999999999999999999999999999999999999999999998888888888877764 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 1.4e-07
    TIGR02168  670 tessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaq 928 
                     +++  +k++i+e+++ +++++ +++++ +e+++le+e e+ + +l+   kel+ +++++++l  ele+++++v ++++ l++ ++ +++ +++  e+++ l+ +++   + +++i +le++ie++ e+l   +++  +le++lte+k+ ++e+++++++l +  ++ e    ++++ +e++++++ +le++ e+l + l+  ++ + +l++++++l+ + ++ +eel+++++ l+e +kkv +l++el++ + + ++
  MMETSP1061-20121228|12254_1  920 FGEQLYFEKESISEMQRMVDQAKIDFESKVEEVASLEEEEEQGRYALDASLKELNLSNDEVARLTDELETEKEKVIEMAAALKEVQDLVQDEKNRVIEYKRLLDAQKHLSLADQTKIRQLEQKIEEQLEALGLGKAENVKLEKDLTETKTLLDEESKKVTELLHSGHNFEG--ARASSLLETEQNKVRALEHSCEQLMSLLDWEKKHVISLEEKQHELKDQAESSSEELNATRTALEESQKKVLKLTHELDNFEVMRNE 1176
                   334444555677777777777777777777777777777777777777777777777777777777777777777777777777777777777776666666666665557777777777777777777777777777777777777777777766666666665555543..45556666666666777777777777777777777777777777777777777777777777777777777777776665544444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.2  17.7    0.0057        12     663     803 ..     299     439 ..     291     444 .. 0.77
   2 ?   -2.6  39.8      0.08   1.6e+02     689     946 ..     431     688 ..     427     698 .. 0.73
   3 !   18.1  36.4   4.4e-08     9e-05     671     929 ..     698     961 ..     691     968 .. 0.82
   4 !    6.0  25.3   0.00021      0.42     672     894 ..     947    1176 ..     943    1189 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.0057
    TIGR02169 663 ersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelek 803
                  ++ g  vs++ k+  ++lr  + +L++   +l ++ r+   +  + +sk+s+ +k+   +e+e  +++  +e++ ++++ l+++++ l+     ++++++ l ++ie+le+++ + ++a++dl++e s +  +e+++ + +
  MMETSP1061-20121228|12254_1 299 ASLGDAVSEASKQIQRELRSTKAKLDKATTELSERERKFTLQYGAEQSKASALQKQKDMLENECLNARIIQEEQTQKIQLLQQEVKTLKALQDTHNQKKTMLIEKIEALEQEKINARNAIDDLDQESSAKIKKELTAAMIE 439
                  455566666677777788888888888888888888888888888888888888888888888877777778888888888888888888888888888889999999999999999999999998888887777776644 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.08
    TIGR02169 689 releslqselr.riekrldelssklsdaekkieeiekele....qleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnkle.lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeee 946
                  +el +++ e++ + +  l+  ++k+++ ek+ +e+e  +     +l +e+e++  + eel ++ + le +l  +  e ++ +  ++++  + a++k+a+ed     ++ek+  +e+++ k+++ ++  ++r  e+ea l++   +e+e+ ee   e +e+  + +++++ + ++ e+l+    +++e+l+    + + L++   +Lkke +  ++++ el+k + e e ++ek+++r+k+++++ ++    l++ e +vke ee
  MMETSP1061-20121228|12254_1 431 KELTAAMIEQEiKYKAMLQGEQRKIDNLEKQAREAELTQRhytmALLQEHETEVSKFEELTARFKTLEGQLRREI-ENERTKRIMAQQDSQGAAYKKAVED-----EKEKVAFLEAHITKVNDLLEAEQKRFIELEAILKETLaIENEQREEMETEFREKESQYQSRIEIEGQKREQLENAYTDIAEKLKAEIEKTAGLQAYELELKKELKSDQEKIAELQKLQVESEKSLEKEKERVKKMAETEANSRLLLKTEELKVKELEE 688
                  555544444441344444555566666666666555433211125778888888888888888888887776544.4455566667777777788888775.....56788889999999999999999999999999999887888888888899999999999999999999999999999999999999999999999999999999999999999999999999999999999999888776655544444433344444 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 4.4e-08
    TIGR02169 671 asekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelse.....ekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklea 929
                   se+++++ l+++le+L++  ++  ++++++e++  +++s l+  ++k++++e   ++++ ++++++ +l++ e++ + l+  le++k+++++l +  eel+  l++ k+++++le+++++     ++   iee+l ++++ + + + r+ e+e e + l+ e e ++e++  l++ + e e+  +e++++ e l ++  e++  l   + ++ e + + +   ++    ++ ++e+++ +++++++ e+k +++++l+++ e+
  MMETSP1061-20121228|12254_1 698 DSERKSVQDLKDELESLQALYDKEVEKIKNVEEAERAARSDLESLTAKVSTLEVVESTIKTKADEESSKLKATEDECRDLKAMLEAEKDQVEKLTKSQEELRDLLEAEKKKVQSLEEMDEMnsqdmSQASSIEEKLMEQQAIIDHHKYRVTELEGEHDVLTKELEAEKESSTRLEHTVVEKEAELEEEREKFEVLLKEHGEIQLALSTERSKILEAQGRANAFGEQLYFEKESISEMQRMVDQAKIDFESKVEEVASLEEEEEQ 961
                  578999*************************************************************************************************************98765411111556666777777777777777777777777777777777777777777777777777777777777777777777777777777888888888888888888888889999999999999999988888888877665 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.00021
    TIGR02169  672 sekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseek..ieeieeelekleeevsriea.rlee.ieaelnkle...lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkeree 894 
                   s+ e++++l+e++e+    l++  +el+  + ++  l+++l+ +++k+ e+ + l+++++  + +k+r+ e ++ l++ ++   ++++++ +le++iee+ e+l   k++  +le++l e k  ++e ++++ +l +  ++ e+ r+++ +e e nk +    + e+l +  + ++++++ lee+++e++++ e++  +l+++++ lee +++v +L +el + +  r+e
  MMETSP1061-20121228|12254_1  947 SKVEEVASLEEEEEQGRYALDASLKELNLSNDEVARLTDELETEKEKVIEMAAALKEVQDLVQDEKNRVIEYKRLLDAQKHLSLADQTKIRQLEQKIEEQLEALGLGKAENVKLEKDLTETKtlLDEESKKVTELLHSGHNFEGaRASSlLETEQNKVRaleHSCEQLMSLLDWEKKHVISLEEKQHELKDQAESSSEELNATRTALEESQKKVLKLTHELDNFEVMRNE 1176
                   567899999999999999999999******************************************************************************99999999999999987766224455555555444444444312222245555544410155566777778889999999999999999999999999999999999999999999999998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       748  (0.18235); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.69u 0.22s 00:00:01.91 Elapsed: 00:00:00.89
# Mc/sec: 2008.01
//
Query:       MMETSP1061-20121228|12260_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2475.93
//
Query:       MMETSP1061-20121228|12263_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-54  181.3   0.1    3.6e-54  181.0   0.0    1.1  1  TIGR01383 not_thiJ: DJ-1 family protein
    1.4e-17   61.6   0.0    1.8e-17   61.2   0.0    1.2  1  TIGR01382 PfpI: intracellular protease, PfpI family


Domain annotation for each model (and alignments):
>> TIGR01383  not_thiJ: DJ-1 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.0   0.0   1.8e-57   3.6e-54       1     179 [.      41     218 ..      41     219 .. 0.95

  Alignments for each domain:
  == domain 1    score: 181.0 bits;  conditional E-value: 1.8e-57
    TIGR01383   1 kvlillaeGaEevEavivvdvLrRagikvtvavvsledklavkgsrgvklladksledveeeefDvivLpGGlpGaenlkdsklleellkkqeskgklvAAICaaPivllaaevllgkkkatcyps..lkekllneeysvekavvvdgkliTsrGpgtaieFalelvelLaGkevaeevak 179
                  +vl+++a+G+Ee+E+  + d+L R g++vt+a+v  e++l  + srg+k++ad s+ed+++ee+D++v pGG+pGae+++dsk+l ++l+kq+s+gk +AA+Ca+P+v+la ++ll+   atcyp   + ekl++     + av v+g ++Ts+Gpgt+++Falel e+L+Gke+ +e++k
  MMETSP1061-20121228|12263_1  41 RVLVPIADGSEEIETTCITDTLTRFGADVTIASVMPEGQLLCNMSRGIKVMADMSIEDAAKEEYDLVVCPGGMPGAEHMRDSKTLVSILEKQKSTGKRYAAVCASPAVVLASNGLLEDPGATCYPAppFREKLTDP---IDDAVAVTGMVTTSQGPGTSLAFALELGEQLFGKEKRDEIQK 218
                  599*************************************************************************************************************************953366666654...4688**********************************9986 PP

>> TIGR01382  PfpI: intracellular protease, PfpI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.2   0.0     9e-21   1.8e-17       2     163 ..      42     202 ..      41     207 .. 0.83

  Alignments for each domain:
  == domain 1    score: 61.2 bits;  conditional E-value: 9e-21
    TIGR01382   2 llvlaedefedeEllePlkalkeaGheVtvvsgkekgeivk.ekkgakvtvdatlddvdaeeydalvipGGra.peylrldekvielvrefaekgKpvaaIChgp.qlLisAdvlrGkkltaypa..iaedvknAGaeyvdirevvvvdanlvtakvpadlpafvse 163
                  +lv ++d+ e++E++   ++l + G++Vt++s   +g+      +g kv  d +++d  +eeyd++v pGG   +e++r  + ++++  + ++ gK  aa+C +p ++L+s ++l    +t+ypa   +e ++       d  ++v v + + t++ p+   af  e
  MMETSP1061-20121228|12263_1  42 VLVPIADGSEEIETTCITDTLTRFGADVTIASVMPEGQLLCnMSRGIKVMADMSIEDAAKEEYDLVVCPGGMPgAEHMRDSKTLVSILEKQKSTGKRYAAVCASPaVVLASNGLLEDPGATCYPAppFREKLTD----PID--DAVAVTGMVTTSQGPGTSLAFALE 202
                  678899**************************7777666553789***************************98*****************************983579**************99555555543....334..345555666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.43
# Mc/sec: 681.43
//
Query:       MMETSP1061-20121228|12258_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.44
# Mc/sec: 1175.90
//
Query:       MMETSP1061-20121228|12265_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-15   54.2   0.1    3.3e-15   53.9   0.1    1.3  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.8e-09   34.5   0.0    4.4e-09   33.8   0.0    1.3  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.2e-06   26.3   0.2    2.4e-06   25.2   0.0    1.6  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    4.6e-06   23.2   0.1      7e-06   22.6   0.0    1.4  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    6.7e-06   23.0   0.2    1.6e-05   21.7   0.0    1.6  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    1.7e-05   22.4   0.0    2.2e-05   22.0   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    0.00094   15.8   0.0     0.0017   15.0   0.0    1.3  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
  ------ inclusion threshold ------
       0.16    8.9  14.6      0.013   12.4   4.8    2.1  2  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.9   0.1   6.4e-18   3.3e-15      71     194 ..      36     161 ..      13     234 .. 0.70

  Alignments for each domain:
  == domain 1    score: 53.9 bits;  conditional E-value: 6.4e-18
    TIGR01622  71 esererereker.rredevrrkrk.eredrrerrekeerlkeelteeeRDartvfvlqlalklreRdlkEFFskvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqa 194
                  e+er   +  +  ++ d  ++k++ e +    ++ k  + +  +  e+RD   ++v q++   ++ +l   F+  g v  v ++ D+  ++ kG aY+EF+ + sv+ A++l G  ++g+ ++v a
  MMETSP1061-20121228|12265_1  36 EIERMEAEAARItKETDDLEKKKEgEVGGSGGGDTKSGGGEASVPSENRDGASIYVGQVDYGTTPEELLGHFEACGTVERVTIVCDKYTGKPKGYAYLEFQSEASVENAIKLDGSEFKGRNLKVTA 161
                  222222222221223333332222022222233333444667777888899999999999999999999999999999999999999999999999999999999999999999988888888865 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.0   8.7e-12   4.4e-09       1      74 [.      87     159 ..      87     165 .. 0.89

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 8.7e-12
    TIGR01628   1 aSlyvGdLdedvtEavLyelFkevgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRl 74 
                  aS+yvG++d   t + L  +F+  g+v  v +  D+ t +  gYaY  fq++a+ e A+   + ++ kg+ +++
  MMETSP1061-20121228|12265_1  87 ASIYVGQVDYGTTPEELLGHFEACGTVERVTIVCDKYTGKPKGYAYLEFQSEASVENAIKLDG-SEFKGRNLKV 159
                  8*********************************************************96544.4466766665 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.7e-09   2.4e-06      95     185 ..      73     163 ..      54     173 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4.7e-09
    TIGR01659  95 sggsdd.ndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkvsyar 185
                  +gg+ +  + + +g+ + v  +    t  el   f + g ++   i+ d  tg   gya+++f sea    aik l+g   + + lkv+  r
  MMETSP1061-20121228|12265_1  73 GGGEASvPSENRDGASIYVGQVDYGTTPEELLGHFEACGTVERVTIVCDKYTGKPKGYAYLEFQSEASVENAIK-LDGSEFKGRNLKVTAKR 163
                  22222225566778889999999999***********************************************8.89999999999997655 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.4e-08     7e-06     298     376 ..      88     165 ..      32     178 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.4e-08
    TIGR01642 298 klyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvg 376
                   +y+g + +  + + +    e  G +    ++ d  tG+ KGya+ e++     + Ai+ L+G +  ++ L+v    v+
  MMETSP1061-20121228|12265_1  88 SIYVGQVDYGTTPEELLGHFEACGTVERVTIVCDKYTGKPKGYAYLEFQSEASVENAIK-LDGSEFKGRNLKVTAKRVN 165
                  48888888888888888888888***********************************7.***********99876665 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   3.1e-08   1.6e-05      55     133 ..      83     160 ..      65     170 .. 0.83
   2 !    5.7   0.0    0.0022       1.1     280     328 ..     138     184 ..     135     212 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 3.1e-08
    TIGR01648  55 PerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGvc 133
                     G+ ++vG++      +el+  fe  G +  + ++ d + Gk +Gya++ f      ++a+k l+  e + Gr l v 
  MMETSP1061-20121228|12265_1  83 NRDGASIYVGQVDYGTTPEELLGHFEACGTVERVTIVCDkYTGKPKGYAYLEFQSEASVENAIK-LDGSEFK-GRNLKVT 160
                  45699**********************************************************9.4666653.6666665 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0022
    TIGR01648 280 edavkamdelnGkeleGseievtlakPvdkesyvrytkaakgrgkeaqa 328
                  e++v+   +l+G e++G ++ vt ak v+   y  y++aa g g+e  +
  MMETSP1061-20121228|12265_1 138 EASVENAIKLDGSEFKGRNLKVT-AKRVNVAGY-HYQQAASGAGGEDGG 184
                  788999999************98.999999977.688888888776544 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   4.2e-08   2.2e-05     268     345 ..      85     162 ..      36     170 .. 0.70

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 4.2e-08
    TIGR01661 268 agycifvynlsp.dtdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfk 345
                   g  i+v  +    t e +l  f   G+v+ v i+ d  t k kGy+++         +ai+ l+G ++ +r l+v++k
  MMETSP1061-20121228|12265_1  85 DGASIYVGQVDYgTTPEELLGHFEACGTVERVTIVCDKYTGKPKGYAYLEFQSEASVENAIK-LDGSEFKGRNLKVTAK 162
                  45555555554313456666777777777777777777777777777777666666666664.6777777777777665 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   3.4e-06    0.0017     110     179 ..      91     160 ..      86     173 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 3.4e-06
    TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafveevPeaallaleqmngallGGrnlkvg 179
                  vG + +    + l   f+  G +  + +  d  t+k kg+a++e   ea+     +++g  + Grnlkv 
  MMETSP1061-20121228|12265_1  91 VGQVDYGTTPEELLGHFEACGTVERVTIVCDKYTGKPKGYAYLEFQSEASVENAIKLDGSEFKGRNLKVT 160
                  7777777777777778888888888888888888888888888888888888888888888888888886 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   4.8   2.6e-05     0.013      14      77 ..      12      73 ..       2      91 .. 0.65
   2 ?    1.3   0.6     0.063        32      68     119 ..     186     233 ..     135     236 .. 0.51

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.6e-05
    TIGR01554 14 elkkltedekeeeaeeekkekdalkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeee 77
                 +++ +++d  ++++++++++ ++l++ei+++eae +r+ ++++++e+k++ + +++++  +++ 
  MMETSP1061-20121228|12265_1 12 AAEGENND--NNNDDDDEEDLEKLQKEIERMEAEAARITKETDDLEKKKEGEVGGSGGGDTKSG 73
                 33333333..333333334556688888888888888888888888888888777777766655 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.063
    TIGR01554  68 agkeeeeeeeakeeaaeafraylrrgddalaee..akalstgtdsdgGylvPee 119
                  ++++ +e++   +e+       + ++  + a++   ++   g + dgG ++P++
  MMETSP1061-20121228|12265_1 186 EDGAVAEDSTVVDEE------DVAGEVTMVAAAiaGATVEDGEAGDGGTTIPTT 233
                  222222222222222......222222222222222223344456999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       300  (0.0731351); expected 82.0 (0.02)
Passed bias filter:                      227  (0.0553389); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 1143.91
//
Query:       MMETSP1061-20121228|12266_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 760.51
//
Query:       MMETSP1061-20121228|12270_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 423.28
//
Query:       MMETSP1061-20121228|12271_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-30  101.9   0.0    7.5e-30  101.5   0.0    1.1  1  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
    1.9e-09   35.6   0.1    5.2e-09   34.2   0.0    1.7  1  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    5.4e-06   23.9   0.0    8.1e-06   23.3   0.0    1.2  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
     0.0023   15.6   0.0       0.91    7.1   0.0    2.3  2  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
  ------ inclusion threshold ------
      0.027   12.1   0.1      0.056   11.0   0.0    1.5  2  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA


Domain annotation for each model (and alignments):
>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.0   9.1e-33   7.5e-30       3     144 ..      33     183 ..      31     201 .. 0.91

  Alignments for each domain:
  == domain 1    score: 101.5 bits;  conditional E-value: 9.1e-33
    TIGR01668   3 llPdaivkdlaeltiellkk.kdikgvvlDkDntlvepdsnevapalkewieelkaa.G.lkllivSNnag......eqrvkalekelgitvlshavKkpgkafrralkemglt.seqvvvvGDrlfTDvllgnrnGsltilveplvhpdea 144
                  + P+++v+++ el+   +k+ ++i+++++DkDntl++p+  +v   +   +e++k+  G  +++i+SN+ag       + +k +e++lgi v++h vKkpg+ + ++l+++++  +  + ++GDrl+TDv+ gn   +lt+ + pl +  e 
  MMETSP1061-20121228|12271_1  33 IIPHVSVTNVSELNYKAMKEyAGIRAIIFDKDNTLTAPYGMAVHCDAASGLENAKEIfGaDNVAIMSNSAGtkddpgYEDAKRIEEALGIAVIRHDVKKPGG-LDEVLTHFDMDdPAALCMIGDRLLTDVVFGNLYSMLTVHTLPLCKGAEN 183
                  68**************9887479***********************************6257***********9998889*******************997.899********99****************************99987764 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   6.3e-12   5.2e-09       1     137 [.      57     173 ..      57     177 .. 0.71

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 6.3e-12
    TIGR01662   1 klvvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqsgigrgk.esveevsekveslleelgvpidvliacphskceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGlatvl 137
                  +++++D+D+tL+  + +    d a+      +  +e+ ++  +v+i++N+   g+++           ++++ee      ++++++   ++++Kp  g l+e+l+++   d++  +++GD++ltD+ +++   + tv 
  MMETSP1061-20121228|12271_1  57 RAIIFDKDNTLTAPYGMAVHCDAAS----GLENAKEIFGA-DNVAIMSNSA--GTKDdP-----GYEDAKRIEE----ALGIAVIR---HDVKKP--GGLDEVLTHFDMDDPAALCMIGDRLLTDVVFGNLYSMLTVH 173
                  689*********4333333333333....23334444444.69********..665531.....2233566777....56667776...78****..**********877899****************999888765 PP

>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   9.9e-09   8.1e-06     212     259 ..     139     187 ..     114     193 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 9.9e-09
    TIGR01452 212 keklsi.dPartlmvGdrletdilfGkdgGlktvlvlsGvsrleeiqev 259
                    ++++ dPa   m+Gdrl td++fG+   + tv +l  ++  e+ q++
  MMETSP1061-20121228|12271_1 139 LTHFDMdDPAALCMIGDRLLTDVVFGNLYSMLTVHTLPLCKGAENRQDN 187
                  556666369****************************999988887776 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0018       1.5       2      17 ..      56      71 ..      55      97 .. 0.87
   2 !    7.1   0.0    0.0011      0.91     169     194 ..     149     174 ..     137     194 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0018
    TIGR02253  2 ikavfFDlddTLidts 17
                 i+a+ FD d+TL    
  MMETSP1061-20121228|12271_1 56 IRAIIFDKDNTLTAPY 71
                 9***********8655 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.0011
    TIGR02253 169 eavmvGDrlekDikGaknlglktvwi 194
                     m+GDrl +D+  ++   + tv +
  MMETSP1061-20121228|12271_1 149 ALCMIGDRLLTDVVFGNLYSMLTVHT 174
                  557******************99875 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       1.5   1.2e+03      20      46 ..      20      49 ..      16      63 .. 0.65
   2 ?   11.0   0.0   6.8e-05     0.056     218     241 ..     149     172 ..     123     175 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.5
    TIGR01460 20 lealnrlrakg...kpvvfvTNnsgrseed 46
                 l++l+ + + +   +p v vTN s  + ++
  MMETSP1061-20121228|12271_1 20 LATLAYVLRHPtiiIPHVSVTNVSELNYKA 49
                 555666666666667777777777554443 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 6.8e-05
    TIGR01460 218 kvlmvGDnlrtDvlgAkeaGldsl 241
                  ++ m+GD+l tDv +++ + + ++
  MMETSP1061-20121228|12271_1 149 ALCMIGDRLLTDVVFGNLYSMLTV 172
                  478*************98888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1330.89
//
Query:       MMETSP1061-20121228|12273_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   14.3   0.1     0.0035   14.2   0.1    1.1  1  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein


Domain annotation for each model (and alignments):
>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   8.6e-07    0.0035      32      77 ..      47      95 ..      32     125 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 8.6e-07
    TIGR03056 32 lllhGagasshsfrklvpllaarf..rv.vapdlPGhGftratarfrfs 77
                  + hG gass s+  ++p+la+r   rv +  d  G Gft  +   r  
  MMETSP1061-20121228|12273_1 47 YFQHGFGASSLSWLPVMPSLAKRLgaRVaLGHDAVGFGFTDRPRDLRWY 95
                 567*******************975466345799*****9988887753 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 761.94
//
Query:       MMETSP1061-20121228|12274_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|12268_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   11.0   0.1       0.44    7.8   0.0    2.2  2  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN


Domain annotation for each model (and alignments):
>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0   0.00011      0.44      68     101 ..     200     232 ..     187     243 .. 0.80
   2 ?    0.2   0.0     0.022        92     204     221 ..     385     402 ..     379     411 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00011
    TIGR02067  68 eeedaeyvWvlDPiDGTksFirGvPvwgtLiaLl 101
                  +e++ +yv v DP+DG ++  +G+Pv gt+ ++ 
  MMETSP1061-20121228|12268_1 200 IENSGRYVAVFDPLDGSSNVDAGIPV-GTIFGIF 232
                  467788*******************9.7776665 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.022
    TIGR02067 204 pyDiaalipiieeAggvi 221
                  +y  a+++ ++e+Agg  
  MMETSP1061-20121228|12268_1 385 LYEAAPMAFLVEQAGGLA 402
                  5999************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2338.09
//
Query:       MMETSP1061-20121228|12267_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-06   22.1   0.7    0.00014   18.3   0.0    2.0  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.5   0.8    0.0042        17     337     385 ..     265     311 ..     155     371 .. 0.62
   2 !   18.3   0.0   3.4e-08   0.00014     480     606 ..     445     569 ..     418     581 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.0042
    TIGR02442 337 eekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeeval 385
                  +++++    + +++s++++++++++dd+++++++e  +++++++++  +
  MMETSP1061-20121228|12267_1 265 NKNKHA--SDGQTTSNNDNDNDNDNDDATDPNPSEWRSGSKRRYRKDVS 311
                  111111..22222233333556777777777777777777766554444 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 3.4e-08
    TIGR02442 480 DASgSMaarkrmkaakgavls...LLrdaYqkrdkvaliaFrgeeaevllpptssvelakreLeelptggrtPLaagLkkaaevlknellkdkderplvvvitDGraNva.slgedpledartlaeklaae 606
                  D SgSM  + +m+ + ++ +    + + a+++     +++F+ +     l+  +s+    + Le+ p gg+t + a+ ++  ev+++++l  + + p+++v +D + Nva   g+d ++   t+ +k+aa+
  MMETSP1061-20121228|12267_1 445 DVSGSMSGK-PMEVSIAMGIGiseITHPAFRN----IVLTFQTQPQWHKLNEGDSIVKKVQSLERAPWGGGTNFEAAYEQILEVCREHRLARE-DVPTLIVFSDMQFNVAqGYGSDMVAMHDTIRKKFAAT 569
                  777777654.6665444433300133344433....3568888888888889999999999*************************7777655.89**************77************9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 2590.76
//
Query:       MMETSP1061-20121228|12276_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.17
# Mc/sec: 442.55
//
Query:       MMETSP1061-20121228|12277_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|12275_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 2073.01
//
Query:       MMETSP1061-20121228|12282_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 418.92
//
Query:       MMETSP1061-20121228|12281_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1764.49
//
Query:       MMETSP1061-20121228|12284_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.63    5.4  13.5       0.72    5.2   9.3    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   9.3   0.00018      0.72     798     871 ..      10      80 ..       5      96 .. 0.58

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00018
    TIGR00927 798 ieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeeveve 871
                  ++++r+g   g+g+ ++     +G e ee   a+e+++ e ++++++ e +++G+  +de+e+++eak ++ ++
  MMETSP1061-20121228|12284_1  10 MKSDRNGSGSGDGDGDEPM---NGYESEEFYSAKEDSNGEDQDEDEDEEKDSDGDDYDDESESDAEAKVNTAKD 80 
                  5566666666666665555...5665555555666666555444444566788999999988888885333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 502.57
//
Query:       MMETSP1061-20121228|12283_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-11   42.5   5.7    1.7e-11   41.8   4.0    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    4.3e-08   30.4   0.0    4.3e-08   30.4   0.0    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    6.1e-08   30.4   1.4    7.4e-07   26.9   0.0    2.0  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    3.1e-07   27.4   0.0    3.1e-07   27.4   0.0    2.9  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    2.1e-06   24.7   0.3    5.6e-06   23.2   0.1    1.7  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0012   15.2   0.0     0.0012   15.2   0.0    2.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
     0.0045   14.5   5.1      0.012   13.0   3.6    1.7  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
  ------ inclusion threshold ------
      0.094   10.5   7.5       0.13   10.1   5.2    1.2  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
        0.3    8.1  12.7       0.41    7.6   8.8    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
        1.3    5.5   7.3        1.9    4.9   5.0    1.2  1  TIGR00860 LIC: cation transporter family protein
        1.3    5.2  13.9        1.6    4.9   9.7    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        1.5    6.3  23.6         13    3.2   0.0    2.1  2  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   4.0   4.9e-14   1.7e-11     276     449 ..      69     247 ..      51     287 .. 0.67

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 4.9e-14
    TIGR01628 276 kqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyval.AqrkeqRkarLqqqfmqasaesrql....sigspvigaanisgrh..qaaqqqavvtqavkqqlasqplnfkinqmmlstqnpskpeapnalaql 449
                  + +    a+ + lY+ N+  +  + +++ +F+++G +    + +d  +++  gFGFV + + e+A  A+++l  + l+g+ + v l A  +  R+    +   q +   r+     +  + +++    ++++  q +qqq+ ++q+++q  ++q+ +++ +q++  +q++++   pn la++
  MMETSP1061-20121228|12283_1  69 ESQMRALAKSSTLYIGNMAFSTRSYNVHSHFSQIGPVRRIVMGMDrFQKTPCGFGFVEYVHREDALLAISNLTSTKLDGRIIRVELdAGFQPGRQYGRGASGGQVRDDKRRGridpARNKRNKTLNWTPAEQvkQEEQQQQQQQQHQHQHQHQQQHQHQQQQHQHHQQQQQQ---PNHLANQ 247
                  55556678999***************************998878845677789********************************944445555555555555544444443344333333333333333332366666666666666666666666665555555554444...4444433 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   1.3e-10   4.3e-08     217     295 ..      76     154 ..      61     163 .. 0.90
   2 ?   -5.4   9.1         9   3.1e+03      47     106 ..     176     232 ..     159     247 .. 0.40

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 1.3e-10
    TIGR01622 217 iadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                  +    LY+Gn+ f+    +++  F   G++  + + +D       G+GF+++++ e a  A+ +l    l GR i+v l
  MMETSP1061-20121228|12283_1  76 AKSSTLYIGNMAFSTRSYNVHSHFSQIGPVRRIVMGMDRFQKTPCGFGFVEYVHREDALLAISNLTSTKLDGRIIRVEL 154
                  55678*********************************9998899********************************87 PP

  == domain 2    score: -5.4 bits;  conditional E-value: 9
    TIGR01622  47 rdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrekee 106
                     +r     d+ r+++ +  +  + e+ +++e++++++++ ++++++++++++++++++
  MMETSP1061-20121228|12283_1 176 D--KR-RGRIDPARNKRNKTLNWTPAEQVKQEEQQQQQQQQHQHQHQHQQQHQHQQQQHQ 232
                  1..11.122344444444444444444444444443333333323333333333322222 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.2e-09   7.4e-07      19      78 ..      94     153 ..      78     161 .. 0.92
   2 ?    1.6   0.9      0.11        36     207     249 ..     205     247 ..     180     266 .. 0.58

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.2e-09
    TIGR01661  19 eirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvs 78 
                  ++ s f+ iG +  + +  d+ +    G+Gfv+yv++eda+ a++ l   +l  + i+v 
  MMETSP1061-20121228|12283_1  94 NVHSHFSQIGPVRRIVMGMDRFQKTPCGFGFVEYVHREDALLAISNLTSTKLDGRIIRVE 153
                  789******************************************************996 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.11
    TIGR01661 207 plhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaa 249
                    +++ ++ ++++ ++++   +++qqh   qq+  q++ +   
  MMETSP1061-20121228|12283_1 205 EQQQQQQQQHQHQHQHQQQHQHQQQQHQHHQQQQQQPNHLANQ 247
                  3333344444455555555567777777777766666655544 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   8.9e-10   3.1e-07     100     180 ..      72     154 ..      60     163 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 8.9e-10
    TIGR01645 100 qqalaimsrv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafveev.PeaallaleqmngallGGrnlkvgr 180
                   +ala  s + +G + f  +   +   f+  GP++ i m  d   +   gf fve v  e alla  ++ ++ l Gr ++v++
  MMETSP1061-20121228|12283_1  72 MRALAKSSTLyIGNMAFSTRSYNVHSHFSQIGPVRRIVMGMDRFQKTPCGFGFVEYVhREDALLAISNLTSTKLDGRIIRVEL 154
                  58999999999********************************************87369********************986 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   1.6e-08   5.6e-06     229     325 ..      74     174 ..      59     266 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 1.6e-08
    TIGR01648 229 vmakvkilyvrnlmletteeiieksfsefkpGa.....vervkki.rdyafvhfedredavkamdelnGkeleGseievtlakPvdkesyvrytkaakgrgke 325
                   +ak   ly+ n++ +t    ++  fs++ p       ++r +k    + fv + +reda+ a+ +l  ++l+G  i v l          +y ++a g++  
  MMETSP1061-20121228|12283_1  74 ALAKSSTLYIGNMAFSTRSYNVHSHFSQIGPVRrivmgMDRFQKTpCGFGFVEYVHREDALLAISNLTSTKLDGRIIRVELDAGFQPG--RQYGRGASGGQVR 174
                  5677889**********************66422222246666652479*******************************97765544..4455555554433 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.5e-06    0.0012     291     371 ..      73     153 ..      40     160 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.5e-06
    TIGR01642 291 tvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvk 371
                   +l +   lyign+ +  +   v+    + G+++   +  d+ +    G++F+ey+   ++ lAi+ L   kl ++++ v 
  MMETSP1061-20121228|12283_1  73 RALAKSSTLYIGNMAFSTRSYNVHSHFSQIGPVRRIVMGMDRFQKTPCGFGFVEYVHREDALLAISNLTSTKLDGRIIRVE 153
                  45667789***************************************************************9999998875 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   3.6   3.7e-05     0.012     192     341 ..      77     235 ..      71     240 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.7e-05
    TIGR01659 192 kdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnvipeggsqpltvrlaeehgkakaahyms...........klglikygeygtgn..ggvaggsaanlpqppafmgannmvhrgrqkksrfqkihpyfd 341
                  k + ly+ n++ +    ++++ f + g + +  +  d++  +p g  fv + +re+a  ais l     +g      +r+  + g   +++y             + g i+ + +   +    ++++  ++ +q++ ++   +  h+ +q++++ q+ h +++
  MMETSP1061-20121228|12283_1  77 KSSTLYIGNMAFSTRSYNVHSHFSQIGPVRRIVMGMDRFQKTPCGFGFVEYVHREDALLAISNLTSTKLDGRI----IRVELDAGFQPGRQYGRgasggqvrddkRRGRIDPARNKRNKtlNWTPAEQVKQEEQQQQQQQQHQHQHQHQQQHQHQQQQHQHHQ 235
                  66789***********************99999999****************************998888865....45555555555555544333455555555566654443322200334555555555666666666677777777766666776665 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   5.2   0.00037      0.13      62     105 ..     198     241 ..     172     281 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00037
    TIGR03499  62 eeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekk 105
                  +e+ ++++++++++++++++ + +++ +++++++++ +q+++++
  MMETSP1061-20121228|12283_1 198 AEQVKQEEQQQQQQQQHQHQHQHQQQHQHQQQQHQHHQQQQQQP 241
                  33333333333333333333333333333333333333333322 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   8.8    0.0012      0.41      93     163 ..     187     256 ..     173     287 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0012
    TIGR03752  93 kkreesvderiqqaleaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegd 163
                  +kr++ ++ + ++++++e+++ ++++++++++q++ +++++++q++ +++++++ ++ +++p+g G    +
  MMETSP1061-20121228|12283_1 187 NKRNKTLNWTPAEQVKQEEQQQQQQQQHQHQHQHQQQHQHQQQQHQHHQQQQQQPNHLANQPLG-GNGMVG 256
                  4667778888888888888888888888888888888888888888888888888888888876.443333 PP

>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   5.0    0.0056       1.9     334     390 ..     183     240 ..     177     268 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0056
    TIGR00860 334 ksakkkrklllerlarllkkkeegeekrrpaleakelsslelrakkgg.edlesktee 390
                  ++a++kr+++l++++ ++ k+ee+++++++++++++ ++ + + ++++ ++ ++++++
  MMETSP1061-20121228|12283_1 183 DPARNKRNKTLNWTPAEQVKQEEQQQQQQQQHQHQHQHQQQHQHQQQQhQHHQQQQQQ 240
                  5677889999999999999999988888777777664433333333321222222222 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   9.7    0.0046       1.6     323     378 ..     190     242 ..     172     282 .. 0.50

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0046
    TIGR02442 323 ekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeae 378
                  +k l+ +++e+ ++ee++++++++++++++   +++++++++++++++++++++++
  MMETSP1061-20121228|12283_1 190 NKTLNWTPAEQVKQEEQQQQQQQQHQHQHQ---HQQQHQHQQQQHQHHQQQQQQPN 242
                  222222222222222222222222222222...22222233333333333333333 PP

>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.038        13     127     156 ..      71     101 ..      49     116 .. 0.71
   2 ?    2.1  15.6     0.083        28      86     129 ..     199     242 ..     183     252 .. 0.46

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.038
    TIGR03789 127 eqeqllee.lalemnvqFrTGSseiephfqe 156
                  +   l ++ +    n+ F+T S ++ +hf +
  MMETSP1061-20121228|12283_1  71 QMRALAKSsTLYIGNMAFSTRSYNVHSHFSQ 101
                  444444442444559**************64 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.083
    TIGR03789  86 aqseiakqeqqlvaltekqqaleqleaeyqqaqkeletlqqeqe 129
                  +q ++++q+qq ++++++q++ +q+++++qq++++++++qq+ +
  MMETSP1061-20121228|12283_1 199 EQVKQEEQQQQQQQQHQHQHQHQQQHQHQQQQHQHHQQQQQQPN 242
                  33333344444444444444444444444444444444333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       654  (0.159434); expected 82.0 (0.02)
Passed bias filter:                      294  (0.0716724); expected 82.0 (0.02)
Passed Vit filter:                        70  (0.0170648); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.41u 0.15s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1063.25
//
Query:       MMETSP1061-20121228|12278_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-56  188.3   0.0    4.2e-56  187.6   0.0    1.3  1  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    2.1e-36  123.2   0.0    6.9e-36  121.5   0.0    1.8  1  TIGR01360 aden_kin_iso1: adenylate kinase
    1.5e-26   91.2   0.0    1.8e-20   71.3   0.0    2.2  2  TIGR01351 adk: adenylate kinases
     0.0033   15.3   0.0     0.0078   14.1   0.0    1.6  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.6   0.0   4.1e-59   4.2e-56       1     184 [.     163     367 ..     163     368 .. 0.84

  Alignments for each domain:
  == domain 1    score: 187.6 bits;  conditional E-value: 4.1e-59
    TIGR01359   1 vvfvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikre..gseegelieslikeGkivPsevtvellekaikese..eskkflidGfPrneenleawekli...dek..vevkf.....vlfldcseevmvkrllkrgqssGrvddnieslkkrletykeetlpvieyfe.......kknkvkkidaeksveevfeevekif 184
                  vvf+lGgPG+GkGtqC+ ++e++   hlsaG+llr+e +++  +se+ +lie+++  GkivP+e+ + ll++a++e e  es  flidGfPrn +nle+w++ +   +++   ++++     vl +dc+ +++ +r+++r++ sGr+ddn esl++r++t+++et+pv++  +       ++ kv +i+++ks+eev++e ++++
  MMETSP1061-20121228|12278_1 163 VVFILGGPGAGKGTQCELLIENYPCHHLSAGQLLRDEAEKKdgSSEHAALIEECLVAGKIVPVEISLALLQNAMREVEgnESLIFLIDGFPRNFDNLEGWTRCMtrdEDNgnSNLDAaavwgVLSFDCPLSILEERVMQRSKDSGRSDDNLESLRRRFKTFRSETVPVVDTLKiidektsSALKVVEIEGHKSLEEVWKETQTSM 367
                  89*********************************9876542247999***************************988445568******************995421112222222445569*******************************************99987752222111345899*************988765 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.5   0.0   6.7e-39   6.9e-36       4     183 ..     162     365 ..     159     370 .. 0.78

  Alignments for each domain:
  == domain 1    score: 121.5 bits;  conditional E-value: 6.7e-39
    TIGR01360   4 kiifivGGpGsGkGtqcekivekyGfthlssGdllreevas...gsergkklqaimekGelvpldvvldllkeallkalek.skGflidGyprevkqGeefekri......aeakl.......vlyldvsedtlvkrllkraetsarvddnektikkrletykkatepvieyye...skg....kllkinaegtvddvflevva 183
                  +++fi+GGpG+GkGtqce ++e y   hls+G+llr+e +     se+++ +++ +  G++vp ++ l ll++a+ +  ++ s  flidG+pr+ ++ e + + +      ++++l       vl +d+    l +r+++r++ s+r ddn +++++r++t+  +t pv++  +    k+    k+++i+  ++ ++v++e  +
  MMETSP1061-20121228|12278_1 162 RVVFILGGPGAGKGTQCELLIENYPCHHLSAGQLLRDEAEKkdgSSEHAALIEECLVAGKIVPVEISLALLQNAMREVEGNeSLIFLIDGFPRNFDNLEGWTRCMtrdednGNSNLdaaavwgVLSFDCPLSILEERVMQRSKDSGRSDDNLESLRRRFKTFRSETVPVVDTLKiidEKTssalKVVEIEGHKSLEEVWKETQT 365
                  799**********************************9864222589999*************************999887699*********98776555433211111122222223335589********************************************99764222333222256667777777888776655 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.3   0.0   1.7e-23   1.8e-20       2     101 ..     164     267 ..     162     306 .. 0.77
   2 !   18.5   0.0   2.6e-07   0.00026     154     211 ..     303     367 ..     286     368 .. 0.78

  Alignments for each domain:
  == domain 1    score: 71.3 bits;  conditional E-value: 1.7e-23
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkk...telgkkakeylekGklvpdeiviklvkerleeeedeek.gfiLDGfPRtleQaeaLdelle 101
                  + +lG PG+GKGTq++ l e++ + h+s+G+llR+e +kk   +e +  ++e+l +Gk+vp ei ++l++++++e e +e+  f++DGfPR+ +  e   ++++
  MMETSP1061-20121228|12278_1 164 VFILGGPGAGKGTQCELLIENYPCHHLSAGQLLRDEAEKKdgsSEHAALIEECLVAGKIVPVEISLALLQNAMREVEGNESlIFLIDGFPRNFDNLEGWTRCMT 267
                  5689******************************9998875557888999************************988765426889******998876655544 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 2.6e-07
    TIGR01351 154 ellkqReDDteevvkkRlevYkeqteplieyYkkkgklve.......idaekkieevlkeileal 211
                  ++   R+DD+ e +++R+++++++t p++++ k     ++       i+++k++eev+ke ++ +
  MMETSP1061-20121228|12278_1 303 SKDSGRSDDNLESLRRRFKTFRSETVPVVDTLKIIDEKTSsalkvveIEGHKSLEEVWKETQTSM 367
                  44556************************998754444333444555************998765 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.6e-06    0.0078       2      43 ..     163     205 ..     162     218 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.6e-06
    TIGR02173   2 iivisGpPGsGkttvakilaeklslklisaGk.irelaekkgl 43 
                  ++ i G PG+Gk t  + l e++  +++saG+ +r+ aekk+ 
  MMETSP1061-20121228|12278_1 163 VVFILGGPGAGKGTQCELLIENYPCHHLSAGQlLRDEAEKKDG 205
                  67899**************************846999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 1333.93
//
Query:       MMETSP1061-20121228|12286_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.0   0.5      0.023   11.7   0.3    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23
      0.028   11.4   0.1      0.033   11.2   0.1    1.2  1  TIGR02261 benz_CoA_red_D: benzoyl-CoA reductase, subunit D


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   1.1e-05     0.023     216     258 ..       5      55 ..       1      61 [. 0.68

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.1e-05
    TIGR00601 216 astetpqeddvaaaaaqae........teeaateaasGedpleflrnqpqf 258
                  +s+   + d+vaaaaa a         t+++ ++ a+G dp+e+ r++p+ 
  MMETSP1061-20121228|12286_1   5 VSNALDERDAVAAAAAVAAsektttttTTTTSSNKANGTDPMEYVRSNPEN 55 
                  55566677788888877666777764333444444559*********9975 PP

>> TIGR02261  benz_CoA_red_D: benzoyl-CoA reductase, subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   1.6e-05     0.033      65     126 ..      22      83 ..       2     101 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.6e-05
    TIGR02261  65 vattgegeslafhtghfysmtthargavylnpearavldigalhgrairndergkveaykmt 126
                  +a+     + +  t    +  t     v  npe rav  ig+  g   +n er k+   +m 
  MMETSP1061-20121228|12286_1  22 AASEKTTTTTTTTTSSNKANGTDPMEYVRSNPENRAVAAIGCAPGLEAKNRERQKLRKQRMR 83 
                  333333333444455555566777778899**************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       288  (0.0702097); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 751.76
//
Query:       MMETSP1061-20121228|12287_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 580.75
//
Query:       MMETSP1061-20121228|12289_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1210.53
//
Query:       MMETSP1061-20121228|12285_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-69  231.5   0.9    1.9e-25   87.6   0.1    3.2  3  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    6.1e-17   59.6   0.1      7e-16   56.1   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    1.6e-12   45.4   0.0      7e-11   40.0   0.0    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
    2.3e-09   35.0   0.7    4.6e-08   30.8   0.0    3.1  4  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    7.7e-07   26.6   0.0    2.2e-06   25.1   0.0    1.8  1  TIGR00436 era: GTP-binding protein Era
    7.7e-06   23.1   0.0    0.00017   18.7   0.0    2.8  3  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    9.2e-06   22.5   0.5    0.00056   16.7   0.0    3.1  4  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    1.4e-05   22.0   0.1    3.3e-05   20.8   0.1    1.7  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
      2e-05   21.7   0.0    3.4e-05   20.9   0.0    1.3  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
     0.0016   15.3   0.0     0.0037   14.2   0.0    1.6  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
     0.0023   14.9   0.0      0.004   14.1   0.0    1.3  1  TIGR00092 TIGR00092: GTP-binding protein YchF
     0.0055   13.7   0.2      0.019   11.9   0.0    1.8  2  TIGR00750 lao: LAO/AO transport system ATPase
     0.0067   13.0   0.2      0.014   12.0   0.0    1.6  2  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.9   0.1     2e-27   6.2e-25       1     114 [.     159     274 ..     159     282 .. 0.79
   2 !   87.6   0.1     6e-28   1.9e-25      78     163 ..     295     380 ..     284     383 .. 0.96
   3 !   55.1   0.0   4.9e-18   1.5e-15     148     275 ..     392     539 ..     382     540 .. 0.81

  Alignments for each domain:
  == domain 1    score: 85.9 bits;  conditional E-value: 2e-27
    TIGR03596   1 iqWfPGHmakakkeikeklklvDvvievlDARiplssknpeleelvknkprlivlnkaDladpektkkwlkyfeekgkkal...avnakkkkkvkkilkaikkllkekkeklkakgl 114
                  +qW+PGH+aka+++++e+lk vDvv+ev+DAR+  ++++p++ e+++ +pr++vl+  D++ +++  +w k +e+ g + +    +n +  +++k+  + +++ +++ ++k+++k  
  MMETSP1061-20121228|12285_1 159 VQWYPGHIAKAERQLSETLKAVDVVVEVRDARACKATAHPRVGEWCAGRPRIVVLTHLDMVPKAASGSWRKAYETLGAERWdeaPINRQVANQAKQARD-LRSKFDDSNSKNSKKRK 274
                  69************************************************************************7776554111555555555555443.33444444444444443 PP

  == domain 2    score: 87.6 bits;  conditional E-value: 6e-28
    TIGR03596  78 kkalavnakkkkkvkkilkaikkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklsk 163
                  +++l+vnak++++++++ +ai k+ ++ +e+++++gl+++a+r+ ++G PNvGKS+liN+++++k ak++nkpgvT+s qwi++++
  MMETSP1061-20121228|12285_1 295 EQVLFVNAKQGQGIHALHRAIFKAGAHVQERRERRGLNPRALRVGIIGYPNVGKSALINKILGRKRAKTENKPGVTRSLQWIRVRT 380
                  5899******************************************************************************9975 PP

  == domain 3    score: 55.1 bits;  conditional E-value: 4.9e-18
    TIGR03596 148 nkpgvTksqqwiklskeleLlDtPGilwpkledeevglkLaltgaikdeildkeevalfllellkek............ypeelkerykleeeee...eeeell.eeiakkrglllkg....geldleraaeillkelrkgklgkisl 275
                    +  T s++   +++e+eLlD+PGi++ k+ d++++l La++++i+++++d++ va+fl+e lk               +++ kery+++  ++   e+ +++ ee+   +++l k      + d e a++ +l+++r+g++g isl
  MMETSP1061-20121228|12285_1 392 TSASPTSSTHSNAMKREFELLDSPGIIPAKMVDQSDALLLAACNCIGEAAYDNQAVAAFLCEWLKAIhimekqglaapdWQKKCKERYGFDPLKKikrEDYDIVqEEYMTGEDMLFKVadnlCRGDAEDASRKILQDFRSGRMGPISL 539
                  345568888889999************************************************9998899999***9998899999999998888766444544134444444443321223789*********************98 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.13        40     253     352 ..     175     272 ..     168     281 .. 0.75
   2 !   56.1   0.0   2.2e-18     7e-16     135     221 ..     294     381 ..     277     388 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.13
    TIGR03594 253 kaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlvkdekeleelkkelee.klkflkfapivfiSAltgkgveklleaikevyeslskr 352
                  ++++ +dvv+ v Da++       ++ + +  +g++ ++v+   D+v  ++   +++k +e+   +  + api    A++ k+ ++l ++ ++  ++ sk+
  MMETSP1061-20121228|12285_1 175 ETLKAVDVVVEVRDARACKATAHPRVGEWC--AGRPRIVVLTHLDMV-PKAASGSWRKAYETlGAERWDEAPINRQVANQAKQARDLRSKFDDSNSKNSKK 272
                  567888999999999999999999999886..69999**********.66666666666664135566778888877887777777777777666665555 PP

  == domain 2    score: 56.1 bits;  conditional E-value: 2.2e-18
    TIGR03594 135 lgevlaiSaehgrgikdLldeileelpeeee.eeeeeeeeepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevk 221
                  +++vl++ a++g+gi++L  +i+++  + +e +e++  + ++++++iiG pNvGKS L+N++lg++r+ +++ +G+Tr    i+v+++
  MMETSP1061-20121228|12285_1 294 VEQVLFVNAKQGQGIHALHRAIFKAGAHVQErRERRGLNPRALRVGIIGYPNVGKSALINKILGRKRAKTENKPGVTRSLQWIRVRTE 381
                  6899*******************8876654414444455789************************************8766666555 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.065        20      75     127 ..     171     226 ..     162     260 .. 0.75
   2 !   40.0   0.0   2.2e-13     7e-11       5      65 ..     337     419 ..     334     432 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.065
    TIGR00231  75 reverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.....d 127
                  r+ +  l+ vd+v+ v d++  +    + + + +   g p+i+v++  D +      +
  MMETSP1061-20121228|12285_1 171 RQLSETLKAVDVVVEVRDARACKATAHPRVGEWCA--GRPRIVVLTHLDMVPkaasgS 226
                  66778899***************************..**********99987644443 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 2.2e-13
    TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskpgvtrdy.vteqieedGkt.....................ykvnllDTaGqed 65 
                  +++i+G ++vGKs+L+n++l++k+++te kpgvtr++ + ++ +ed+ +                      +++llD +G + 
  MMETSP1061-20121228|12285_1 337 RVGIIGYPNVGKSALINKILGRKRAKTENKPGVTRSLqWIRVRTEDSRKayasgktsasptssthsnamkREFELLDSPGIIP 419
                  79*********************************983555666777669999999999999999999999999999999654 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.85   2.7e+02     101     156 ..     180     233 ..     171     263 .. 0.65
   2 ?   -0.0   0.1      0.41   1.3e+02     135     185 ..     258     315 ..     240     316 .. 0.60
   3 !   30.8   0.0   1.5e-10   4.6e-08      18      63 ..     335     379 ..     324     386 .. 0.88
   4 ?   -2.7   0.0       2.8   8.7e+02      74     104 ..     479     509 ..     479     511 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.85
    TIGR03598 101 LkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkkselkkalkkvkk 156
                  +  vv + D+r    +   ++ e+++  ++p +vvlt +D + k++  +  k++++
  MMETSP1061-20121228|12285_1 180 VDVVVEVRDARACKATAHPRVGEWCA--GRPRIVVLTHLDMVPKAASGSWRKAYET 233
                  44555666666666667777777775..6788999999999988877665555554 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.41
    TIGR03598 135 vltKaDklkkselkkalkkvkkelkke.......eekvevllfSslkkegieelkael 185
                  + +K D  ++++ kk++k+  +  +++       +   +vl++ +++++gi+ l++++
  MMETSP1061-20121228|12285_1 258 LRSKFDDSNSKNSKKRKKNAPNGNRNDndndnniTPVEQVLFVNAKQGQGIHALHRAI 315
                  6667777766666666665544332221111112334578888999999999998776 PP

  == domain 3    score: 30.8 bits;  conditional E-value: 1.5e-10
    TIGR03598  18 lpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevn 63 
                  +  + ++G+ NvGKS+liN++++rk  a+t ++PG T+++ + +v+
  MMETSP1061-20121228|12285_1 335 ALRVGIIGYPNVGKSALINKILGRK-RAKTENKPGVTRSLQWIRVR 379
                  667999*****************99.8************9887765 PP

  == domain 4    score: -2.7 bits;  conditional E-value: 2.8
    TIGR03598  74 YGyakvskeekekwqklieeYLekrenLkgv 104
                  YG+   +k ++e++  + eeY++  + L +v
  MMETSP1061-20121228|12285_1 479 YGFDPLKKIKREDYDIVQEEYMTGEDMLFKV 509
                  999999999************9998887665 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     7e-09   2.2e-06       2      37 ..     337     372 ..     336     387 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 7e-09
    TIGR00436   2 fvailGrpnvGKSTLlNkllgqkisivSpkaqTTrn 37 
                  +v+i+G pnvGKS L+Nk+lg k + + +k+  Tr 
  MMETSP1061-20121228|12285_1 337 RVGIIGYPNVGKSALINKILGRKRAKTENKPGVTRS 372
                  79*************************999999985 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.39   1.2e+02      55     108 ..     170     223 ..     166     263 .. 0.90
   2 !   18.7   0.0   5.4e-07   0.00017     123     183 ..     288     363 ..     265     382 .. 0.68
   3 ?   -0.2   0.0       0.3        96     203     261 ..     405     459 ..     392     467 .. 0.68

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.39
    TIGR03597  55 lnllnslsekkalvvavvDifdlegslikelkrfvkenkvllvvNKidllpksv 108
                  +++l++  +   +vv v D    + +  + + + +   + ++v   +d++pk+ 
  MMETSP1061-20121228|12285_1 170 ERQLSETLKAVDVVVEVRDARACKATAHPRVGEWCAGRPRIVVLTHLDMVPKAA 223
                  56788888899999999999999****************************986 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 5.4e-07
    TIGR03597 123 eeglkp.vdillvsakkkkglkellelikka....rekk..........dvyvvGvtNVGKSsliNkllklnkgkk 183
                  +++++p +++l+v+ak+++g++ l ++i ka    +e++           v ++G  NVGKS+liNk+l  ++ k+
  MMETSP1061-20121228|12285_1 288 DNNITPvEQVLFVNAKQGQGIHALHRAIFKAgahvQERRerrglnpralRVGIIGYPNVGKSALINKILGRKRAKT 363
                  55555415788888888888888888875431111221111122222224679****************7766554 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.3
    TIGR03597 203 ldkesvllDtpGiineeqianllskkdlkkivpkkeikpktyqlkeeqtlflgglarld 261
                  +++e  llD+pGii +    +++++ d+  ++  + i ++ y  +   +++++ l  ++
  MMETSP1061-20121228|12285_1 405 MKREFELLDSPGIIPA----KMVDQSDALLLAACNCIGEAAYDNQAVAAFLCEWLKAIH 459
                  556789********85....456666666666666666666666666666666655555 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.51   1.6e+02      81     133 ..     174     224 ..     167     272 .. 0.75
   2 ?    1.3   0.0     0.083        26     134     168 ..     286     320 ..     272     331 .. 0.74
   3 !   16.7   0.0   1.8e-06   0.00056       8      42 ..     336     370 ..     330     373 .. 0.92
   4 ?   -1.4   0.0      0.56   1.8e+02      82     141 ..     421     479 ..     419     497 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.51
    TIGR03918  81 revlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke 133
                   e+l+ +d+++ v da+a + ++  ++ e +  +  p ivvl++ d++ ++++
  MMETSP1061-20121228|12285_1 174 SETLKAVDVVVEVRDARACKATAHPRVGEWCAGR--PRIVVLTHLDMVPKAAS 224
                  5789999999999999987777777777777766..99999999999887655 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.083
    TIGR03918 134 keklekkkeeevvlvsakekegieelkealiellp 168
                  +++++ +  e+v++v+ak+++gi++l++a++++  
  MMETSP1061-20121228|12285_1 286 DNDNNITPVEQVLFVNAKQGQGIHALHRAIFKAGA 320
                  4444455567899*****************98754 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 1.8e-06
    TIGR03918   8 lhialfGrrNaGKSsliNaltgqdvaivsdvpGtT 42 
                  l+++++G  N+GKS+liN+++g++ a + + pG T
  MMETSP1061-20121228|12285_1 336 LRVGIIGYPNVGKSALINKILGRKRAKTENKPGVT 370
                  689*************************9999988 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 0.56
    TIGR03918  82 evlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeekekeklekkk 141
                  +++++ d  ll   + ++  +++++ ++++  + ++ i +++k  l+  +  ++k +++ 
  MMETSP1061-20121228|12285_1 421 KMVDQSDALLLAACNCIGEAAYDNQAVAAFLCEWLKAIHIMEKQGLAAPD-WQKKCKERY 479
                  678999999999999999*************************9998875.444444444 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1     1e-07   3.3e-05     162     214 ..     307     360 ..     285     387 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1e-07
    TIGR03156 162 rikklkkelekvekqreeqrkkrkks.evptvalvGYTNaGKstllnaltkaev 214
                   i++l++ + k  ++ +e+r++r  + ++ +v+++GY N GKs+l+n++ + + 
  MMETSP1061-20121228|12285_1 307 GIHALHRAIFKAGAHVQERRERRGLNpRALRVGIIGYPNVGKSALINKILGRKR 360
                  588899999999999999999997652689******************988643 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   1.1e-07   3.4e-05     208     246 ..     334     372 ..     289     374 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 1.1e-07
    TIGR00450 208 dglklaivGktNvGKSSLlNallkkdraiVsdikGttRD 246
                    l++ i+G +NvGKS+L+N +l + ra   + +G tR 
  MMETSP1061-20121228|12285_1 334 RALRVGIIGYPNVGKSALINKILGRKRAKTENKPGVTRS 372
                  467899*******************************95 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0       4.3   1.4e+03     273     291 ..     206     224 ..     204     236 .. 0.77
   2 !   14.2   0.0   1.2e-05    0.0037     159     178 ..     337     356 ..     296     382 .. 0.86

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 4.3
    TIGR02729 273 ekpelvvlnkidlleeeel 291
                   +p++vvl+ +d++ ++  
  MMETSP1061-20121228|12285_1 206 GRPRIVVLTHLDMVPKAAS 224
                  5899********9986554 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.2e-05
    TIGR02729 159 dvglvGlpnaGkStllsavs 178
                   vg++G+pn+GkS+l++++ 
  MMETSP1061-20121228|12285_1 337 RVGIIGYPNVGKSALINKIL 356
                  59**************9974 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.3e-05     0.004       3      46 ..     336     379 ..     334     387 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.3e-05
    TIGR00092   3 lkaGivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvn 46 
                  l+ Gi+G pnvGks l + i   k +++ n P  t   +  +v 
  MMETSP1061-20121228|12285_1 336 LRVGIIGYPNVGKSALINKILGRKRAKTENKPGVTRSLQWIRVR 379
                  789*****************999999999999887666555555 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0       0.6   1.9e+02     214     235 ..     296     317 ..     257     332 .. 0.75
   2 !   11.9   0.0   6.1e-05     0.019      33      57 ..     334     358 ..     329     369 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.6
    TIGR00750 214 kvlktsavegrGikelvdaiee 235
                  +vl + a++g+Gi+ l  ai +
  MMETSP1061-20121228|12285_1 296 QVLFVNAKQGQGIHALHRAIFK 317
                  6788889999999999887754 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 6.1e-05
    TIGR00750  33 rahvvGltGvPGaGkstlvekliee 57 
                  ra +vG+ G P +Gks+l++k+  +
  MMETSP1061-20121228|12285_1 334 RALRVGIIGYPNVGKSALINKILGR 358
                  899*****************98654 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.4   4.5e+02     132     151 ..     297     316 ..     243     329 .. 0.64
   2 !   12.0   0.0   4.4e-05     0.014       1      29 [.     342     371 ..     342     384 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.4
    TIGR00437 132 vvplsatkgrgieelkkaid 151
                  v+ + a++g+gi++l++ai 
  MMETSP1061-20121228|12285_1 297 VLFVNAKQGQGIHALHRAIF 316
                  44556666666666666665 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 4.4e-05
    TIGR00437   1 GnpNvGKstlfnaLtg.snqkvgNwpGvTV 29 
                  G pNvGKs+l+n++ g +++k  N pGvT 
  MMETSP1061-20121228|12285_1 342 GYPNVGKSALINKILGrKRAKTENKPGVTR 371
                  78**********9766268999******95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 2495.79
//
Query:       MMETSP1061-20121228|12288_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-19   66.5   0.0    7.2e-19   65.5   0.0    1.4  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.5e-17   60.6   0.0    8.9e-17   58.8   0.0    1.7  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
      7e-14   48.3   0.0    1.7e-13   47.0   0.0    1.5  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      2e-10   37.4   0.0    2.2e-07   27.4   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
      5e-07   26.6   0.3    2.8e-06   24.2   0.2    2.2  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    8.2e-07   25.5   0.0    1.2e-06   24.9   0.0    1.2  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    1.9e-06   25.1   0.0      4e-06   24.0   0.0    1.5  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    3.6e-05   20.1   0.0    6.8e-05   19.2   0.0    1.4  1  TIGR00580 mfd: transcription-repair coupling factor
    0.00094   15.3   0.0    0.00094   15.3   0.0    1.9  1  TIGR00631 uvrb: excinuclease ABC subunit B
     0.0013   14.8   0.0     0.0013   14.8   0.0    2.0  2  TIGR00603 rad25: DNA repair helicase rad25
     0.0042   13.9   0.0      0.037   10.8   0.0    2.2  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
  ------ inclusion threshold ------
        4.8    3.3  11.7        6.6    2.8   8.1    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   2.1e-21   7.2e-19       9     338 ..      92     429 ..      88     445 .. 0.81

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 2.1e-21
    TIGR01389   9 FGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvP...aLllkg.....ltvvisPLisL...mkDqvdqL.raaGveaaalnstlsakeaqeilkalaagelklLYvaPerleqdkfl.ellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadaevredivekLelkdaaefvssfdRen..l.afsvvkkenkkkqlleylkkere.ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkr 338
                   G+ +  + qe+++ + l+grd++++  tG Gk   + +P   aLl +       +vv++P   L   ++  v+ L  ++G ++ ++  ++  ++++         + ++L  +P rl+ +    + ++  +++ l +Dea  +     DF  e ++l +++ +  k+  + + at +++v++  ++ L+   + e+ + f+ ++  l ++  +   + k+  l+yl +e   +s +i+ ++ ++v++la +L++ g++a+  h+ +s+ +R  a++kF+     +++ t     G+d + v  vi +dlP++   y   +GR  R G+  +ai + ++ D+++ +r
  MMETSP1061-20121228|12288_1  92 LGWTSATRIQEKVLVDALKGRDIIGLAETGSGKTGAFCIPmlqALLENPvrgavFGVVLAPTRELafqIHAVVEGLgTTMGATSLCIVGGVPITQQSIA----LGRNPHILVATPGRLLDHLTNtKGFHLRSLQYLVLDEADRML--SLDFEQELNELLQVIPE--KRKTLLFSATMTSKVQKLQRACLKDPVKVEVSTKFQTPKklLqSYLFIPA-KYKDCYLTYLVNEYAgQSMLIFGATCNNVQRLALMLRNLGFPAICLHGQMSQPKRLGALHKFTSGSRSILICTDVAARGLDIPSVDLVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDVEVYQR 429
                  688888899*************************99999944445554322233589****76662225667788844688888888888888776533....33455789999****98765514567778999******9764..57**9887777666543..444889999******99999999988888899999887622313444455.5555556666655544******************************************************************************************************999999988765 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.8   0.0   2.6e-19   8.9e-17       8     341 ..      93     430 ..      89     467 .. 0.74

  Alignments for each domain:
  == domain 1    score: 58.8 bits;  conditional E-value: 2.6e-19
    TIGR00614   8 glesfrpvqlevinavlegrdalvvmatGgGksLCyqlp...avvs.....dgltlvisPLisLmeDqvlqLkasdisatlLnsaqskeeakevladl.kdg.klkllYvtPekvsksksllqkleerkkltliavDeahCisqWGhDfRsdykalgsLkqklPsv.pviaLtatasssvreDilklLklkkpqvtitsfdRpnlkyeveekkskiledl.lkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrl 341
                  g+ s    q++v+  +l+grd + +  tG Gk   + +p   a++        +++v++P + L   q++ +   ++ +t+ +++        ++++    g + ++l  tP ++  + +  + + + + l  +++Dea  +     Df ++   l+ L q +P+    +  +at +s+v++    +Lk      ++t f+ p   ++     +   +d+ l ++v+e+ g+s +i+  + ++v+++a  L+++g  a   h  +++ +r    +kf+     +++ t     G++ p v  vi ++lp +   Y   +GR  R g   +++++ ++ Dv + +rl
  MMETSP1061-20121228|12288_1  93 GWTSATRIQEKVLVDALKGRDIIGLAETGSGKTGAFCIPmlqALLEnpvrgAVFGVVLAPTRELAF-QIHAV-VEGLGTTMGATSLCIVGGVPITQQSiALGrNPHILVATPGRLLDHLTNTKGF-HLRSLQYLVLDEADRML--SLDFEQE---LNELLQVIPEKrKTLLFSATMTSKVQKLQRACLKDPVKVEVSTKFQTPKKLLQSYLFIPAKYKDCyLTYLVNEYAGQSMLIFGATCNNVQRLALMLRNLGFPAICLHGQMSQPKRLGALHKFTSGSRSILICTDVAARGLDIPSVDLVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDVEVYQRL 430
                  66777889************************99888873333333111114589*****999864.33332.2233333332222222222333332233313467778999998886655555.7788999******9875..5799986...788889999762577889********966666655555567888999986666665556455555279*******************************************************999999999988899***************************99999999999999999999888876 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   5.1e-16   1.7e-13      11     358 ..      93     421 ..      85     433 .. 0.77

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 5.1e-16
    TIGR04121  11 gwep.rafQkevleaaeegesglliapTGaGKTlavflpslielaakekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelr.vvglsATvg.nleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskillvpt 358
                  gw+  ++ Q++vl  a +g++ +  a TG+GKT a  +p+l +l+ ++  + ++  + ++P + La +i+  +e   + +g +       G  + ++++    + p+iL+ Tp  l   l++++    +++l+ +v+DE   +l+      +e  L  L ++ pe r ++  sAT+  +++++++++l++   + ++  k +++k+l  + l+        ++       l  +++e  + ++ l+F  t +   +l      +  +l  +    Hg +++ +R    +++++g+  +++cT     G+D   vdlvi+   p   +  + R+GR++ +  +   i +v  
  MMETSP1061-20121228|12288_1  93 GWTSaTRIQEKVLVDALKGRDIIGLAETGSGKTGAFCIPMLQALL-ENPVRGAVFGVVLAPTRELAFQIHAVVEGLGTTMGATSL--CIVGGVPITQQSIALGRNPHILVATPGRLLDHLTNTK-GFHLRSLQYLVLDEADRMLSL----DFEQELNELLQVIPEKRkTLLFSATMTsKVQKLQRACLKDPV-KVEVSTKFQTPKKLLQSYLFIP----AKYK----DCYLTYLVNE-YAGQSMLIFGATCNNVQRL----ALMLRNLGFPAICLHGQMSQPKRLGALHKFTSGSRSILICTDVAARGLDIPSVDLVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQ 421
                  78651679************************************9.5555567888999*********99888888888876544..346999*********************9877776655.45689*************996....4677788888888776516677***97256778888887766.3444444444555444444444....1222....2234444444.356899******9987555....444444445555568***********************************************************9865444444445544 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   6.3e-10   2.2e-07      24     168 ..      84     230 ..      78     296 .. 0.83
   2 !    8.0   0.0   0.00045      0.15     324     388 ..     360     424 ..     349     463 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 6.3e-10
    TIGR03817  24 dvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp...ratalylaPtkalaadqlravkelee.rdvraatydGdtpaeerewirekaryv.ltnPdmlhlgilpsharWakflralryvvvdechs 168
                   +v+a+++ G ++  + q ++   a +G++++  + t sGk+ a+ +P+l+al e+p       + laPt+ la    ++v+ l +  +  + +  G  p  +++ +  +  ++ ++ P  l   +  +       lr+l+y+v+de+ +
  MMETSP1061-20121228|12288_1  84 AIVEACDNLGWTSATRIQEKVLVDALKGRDIIGLAETGSGKTGAFCIPMLQALLENPvrgAVFGVVLAPTRELAFQIHAVVEGLGTtMGATSLCIVGGVPITQQSIALGRNPHIlVATPGRLLDHLTNTK---GFHLRSLQYLVLDEADR 230
                  578888999999999999999999********************************8432223467*********9999999998845677778889999888887766554440566766654443332...3469**********975 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00045
    TIGR03817 324 alkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvarddPl 388
                  ++++G+   + +t+    G+di  +d v+    PG    +  ++Gr+ r+g+   ++ + ++  +
  MMETSP1061-20121228|12288_1 360 KFTSGSRSILICTDVAARGLDIPSVDLVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDV 424
                  566777777888999999****************************9999998877766655444 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.2   8.1e-09   2.8e-06     487     577 ..     344     433 ..     111     439 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 8.1e-09
    TIGR00643 487 llhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLvaepkseeakkRLrvl 577
                   lhg++++ ++  +l++F +++ +iL++T v   G+d+P + +++  d    G   +H + GR +R  + ++++ ++++ + e  +RL+ l
  MMETSP1061-20121228|12288_1 344 CLHGQMSQPKRLGALHKFTSGSRSILICTDVAARGLDIPSVDLVINFDLPGHGKDYIHRV-GRTARAGRSGKAIAMVTQYDVEVYQRLEGL 433
                  69********************************************************98.9***********999999999999999855 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   3.6e-09   1.2e-06      13     288 ..     108     389 ..     103     419 .. 0.74

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 3.6e-09
    TIGR01970  13 alaakpqvvLeappGaGkstalPL....alLdapwligrkiilLePrrlaaravaerlaselgeevGet....v.Gyrvrlen.kvsaktrlevvteGiltrmlqdDP..eLegvdllifDefhersldaDlaLalaldvqsalreDLkilimsatLdg..erlsel.ldeapvveseGrsfPveirylplredealedrvaraveealaee.s.gsvLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviD 288
                  al+ + +++  a +G+Gk+ a+ +    alL++p       ++L P r  a ++ + + + lg ++G t    v G  +  ++   +++ ++ v t G l   l +    +L  ++ l++De  +r l+ D    l  +  +++ e  k l+ sat+    ++l++  l++   ve     f  ++  + l++  ++  + +++ +  l +e + +s+L+f    ++++r++ +L  +l+ ++   + L+G+++  ++  a++  ++G r + ++t++a   l i+ v +vi+
  MMETSP1061-20121228|12288_1 108 ALKGR-DIIGLAETGSGKTGAFCIpmlqALLENPVRGAVFGVVLAPTRELAFQIHA-VVEGLGTTMGATslciVgGVPITQQSiALGRNPHILVATPGRLLDHLTNTKgfHLRSLQYLVLDEA-DRMLSLDFEQELN-ELLQVIPEKRKTLLFSATMTSkvQKLQRAcLKDPVKVEVS-TKF--QTPKKLLQSYLFIPAKYKDCYLTYLVNEyAgQSMLIFGATCNNVQRLALMLR-NLGFPA---ICLHGQMSQPKRLGALHKFTSGSRSILICTDVAARGLDIPSVDLVIN 389
                  55554.4666799******9986611334566664444445899998866665543.445666666665333353577877773579***********999999876422799*********6.7999999988875.6677899999********9752245554313333333332.223..233334667777888999998888766524157****************999.899554...469******************************************97 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   1.2e-08     4e-06     126     335 ..     221     422 ..     184     450 .. 0.72

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 1.2e-08
    TIGR01587 126 SvliiDEvhayeeytkal.llallevlkdvdvkillmsAtlpkllkeylekielveenealdlke..ekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDi.svdvlitelapi..dsLiQRlGRlaRygrkirenrevyvltel 335
                    l++DE++ + +   +  l  ll+v+ ++  k ll sAt+   ++++ +    +  +  + +k+  +k+  +  + + +k k+  ++ l   + +  +++++li+  t ++ q l   l++ +     i lH+++++  r       l+++ +    +++ T v+  +lDi svd++i    p      i R+GR aR gr  +    + ++t+ 
  MMETSP1061-20121228|12288_1 221 QYLVLDEADRMLSLDFEQeLNELLQVIPEK-RKTLLFSATMTSKVQKLQRACLKDPVKVEVSTKFqtPKKLLQSYLFIPAKYKDCYLTYL---V-NEYAGQSMLIFGATCNNVQRLALMLRNLGFP--AICLHGQMSQPKRLGA----LHKFTSGSRSILICTDVAARGLDIpSVDLVINFDLPGhgKDYIHRVGRTARAGRSGK---AIAMVTQY 422
                  369******988877666588888888775.6899*******776666666554444444444442234443444334444444444443...3.4556788999988888888888888876654..799*******988777....************************899****97777522579*********998877...55555554 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0     2e-07   6.8e-05     670     736 ..     327     391 ..     311     426 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2e-07
    TIGR00580 670 sieklkeqlrel.vPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiier 736
                  ++++l+ +lr+l  P       Hgqm++ +    +++F++++  +L+cT +   G+dip++  +i  +
  MMETSP1061-20121228|12288_1 327 NVQRLALMLRNLgFP---AICLHGQMSQPKRLGALHKFTSGSRSILICTDVAARGLDIPSVDLVINFD 391
                  555666666666223...2468**************************************99887555 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.8e-06   0.00094     445     548 ..     317     416 ..     307     431 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.8e-06
    TIGR00631 445 rvlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarn.veGkvi 548
                   +l+   t    + l+  l++lg  +  lh ++   +r+  ++++  g+  +l+  ++   GlD+P v lv  +D   +G     +  i  +Gr ar   +Gk+i
  MMETSP1061-20121228|12288_1 317 SMLIFGATCNNVQRLALMLRNLGFPAICLHGQMSQPKRLGALHKFTSGSRSILICTDVAARGLDIPSVDLVINFDLPGHG-----KDYIHRVGRTARAgRSGKAI 416
                  56777788888888999999**************************************************9888754444.....56799999999972457766 PP

>> TIGR00603  rad25: DNA repair helicase rad25
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.4   5.6       5.1   1.7e+03     145     199 ..       7      61 ..       1      92 [. 0.42
   2 !   14.8   0.0   3.8e-06    0.0013     471     593 ..     288     413 ..     264     428 .. 0.78

  Alignments for each domain:
  == domain 1    score: -5.4 bits;  conditional E-value: 5.1
    TIGR00603 145 eedaelveetltskedllkdkeevtaaksageveaaqseeavskdiadfaekeee 199
                  +++++l+++++ + ed +k++ee + a+s+++ ++++ +++   + +d  + ++ 
  MMETSP1061-20121228|12288_1   7 NKKKKLKKRSQKKAEDDMKKREEDDDARSENDSSDEKEKTKEEPQATDADADADG 61 
                  3333445555554555555554444444444443333332222222222222222 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 3.8e-06
    TIGR00603 471 rkklllyvmnpnkfracqflikfherrgdkiivfsdnvfalkeyaiklgk...p..fiyGptsqqerlkilenfkynekvntiflskvgdtsidlpeanvliqisshaGsrrqeaqrlGrilrakkks 593
                  +k l  y+  p k++ c       e  g  +++f      +++ a+ l++   p   ++G  sq +rl  l++f   ++   +  + v+   +d+p  +++i+     G  +    r+Gr  ra +  
  MMETSP1061-20121228|12288_1 288 KKLLQSYLFIPAKYKDCYLTYLVNEYAGQSMLIFGATCNNVQRLALMLRNlgfPaiCLHGQMSQPKRLGALHKFTSGSR-SILICTDVAARGLDIPSVDLVINFD-LPGHGKDYIHRVGRTARAGRSG 413
                  33344699*********887888899********8877777777776654222422569***************98765.3445679***************986.4677788999999999997755 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.19        64      24      72 ..     110     162 ..     105     172 .. 0.69
   2 !   10.8   0.0   0.00011     0.037     311     432 ..     337     462 ..     300     470 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.19
    TIGR04095  24 ngrGilkma.tGtGktlta.Lalvskl..aekikslvvvvvvPykhLveqWak 72 
                  +gr i+ +a tG+Gkt    + + ++l  +   + +  vv++P ++L+ q  +
  MMETSP1061-20121228|12288_1 110 KGRDIIGLAeTGSGKTGAFcIPMLQALleNPVRGAVFGVVLAPTRELAFQIHA 162
                  68899999879*****7541444555543334455666899999999888665 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00011
    TIGR04095 311 elglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLRk.spGkeraei..yDfivvPp...keadeledkefeversllkrelkRvvefaela 432
                  +lg+ +     + s+ +R   l++f+sg+   l+       G+D+P++   +        +++i R GR  R    Gk  a +  yD+ v  +      ++l +   +++ + +   l+Rv e  +la
  MMETSP1061-20121228|12288_1 337 NLGFPAICLHGQMSQPKRLGALHKFTSGSRSILICTDVAARGLDIPSVDLVINFDLPGHGKDYIHRVGRTARAgRSGKAIAMVtqYDVEVYQRlegLLGKKLPE--HKLDEETVLVLLERVGEAQRLA 462
                  566666666667788999999*****************************999999****************8468***9988446666666632222233333..3444444444566666666666 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   8.1     0.019       6.6     316     377 ..       5      68 ..       1     103 [. 0.55

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.019
    TIGR02442 316 eeeqekeekkleekkeeakpdeekedes..eekekeeskkqeeeepgkddekeedekeeaeeea 377
                  e++++k+ kk+++kk+e+++++ +ed++  +e++++++k++++eep++ d++ +   + aee++
  MMETSP1061-20121228|12288_1   5 EKNKKKKLKKRSQKKAEDDMKKREEDDDarSENDSSDEKEKTKEEPQATDADADADGDGAEEQQ 68 
                  4445566666666666666665555555333333333333335555555544444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      187  (0.0455875); expected 82.0 (0.02)
Passed Vit filter:                        40  (0.00975134); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.56u 0.15s 00:00:00.71 Elapsed: 00:00:00.43
# Mc/sec: 1580.80
//
Query:       MMETSP1061-20121228|12290_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1565.87
//
Query:       MMETSP1061-20121228|12292_1  [L=183]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (183 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1207.70
//
Query:       MMETSP1061-20121228|12291_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-08   29.6   5.2    6.2e-08   29.6   3.6    1.9  2  TIGR00846 caca2: calcium/proton exchanger
    2.6e-06   24.7   2.6    2.6e-06   24.7   1.8    1.8  2  TIGR00378 cax: calcium/proton exchanger


Domain annotation for each model (and alignments):
>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0      0.19   3.8e+02     334     354 ..     103     123 ..      79     125 .. 0.78
   2 !   29.6   3.6     3e-11   6.2e-08     219     351 ..     401     533 ..     384     556 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.19
    TIGR00846 334 valvlsvlltaitlqdGrsny 354
                  v  +lsv++  + ++dG+ +y
  MMETSP1061-20121228|12291_1 103 VPWALSVFVGRVEIEDGKLTY 123
                  455788888888888888776 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 3e-11
    TIGR00846 219 eeptvlsslsaailLvvativvallaellvstlesvveslglskafiglilipivgnaaEhvtavivalkn...kldialgvalGSalqiallvvplvvlvawilgieldLnlealelvalvlsvlltaitlqdGr 351
                  ee +v   l a+ +L + t++v++ ++ +v+ +++++ + g++  +++++l+p+  n++E +++v  a k     + ++l    G a      +  l++ +++i  + l+ +++  e++a+v+  +++a+++q+ +
  MMETSP1061-20121228|12291_1 401 EEQQVAIKLKAFKMLAIGTVMVVYFSDPMVDVMQEIAVKAGIPPFYVSFVLAPLASNSSEVLASVFYAAKKtrkTMTVSLSALEGAACMNN--TFCLCIFMGLIYMRGLAWQYT-AETAAIVIVQFIMAYLVQNDT 533
                  3333777889999****************************************************99987411134444444445544444..556778888888888888876.588888888888888887543 PP

>> TIGR00378  cax: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.4      0.24   4.9e+02      69     105 ..      78     114 ..      22     133 .. 0.62
   2 !   24.7   1.8   1.3e-09   2.6e-06     184     327 ..     386     532 ..     370     552 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.24
    TIGR00378  69 lialkeGlveivkasltGsvlgnlllvlGlafflGGl 105
                   i l +  + +   +l Gs +  l +   l++f+G +
  MMETSP1061-20121228|12291_1  78 SIELAQESLSVGIGALAGSTIMLLTVPWALSVFVGRV 114
                  3444455555555566666666666666666666655 PP

  == domain 2    score: 24.7 bits;  conditional E-value: 1.3e-09
    TIGR00378 184 aeqtevmeeied.ePehs.lsvkvatv.vllavtvvvavisellvgtlesvveslGlsklfiGvivvpivGnaaehatavlvalkd...kmdlalevavGsslqialfvaPvlvivgilidvpmdlnfslfelvallvavllvnaissdG 327
                  ae +e++e  +d  Pe++ +++k+    +l   tv+v + s+ +v+ ++ ++ + G+   ++  ++ p+  n++e  ++v  a k+    m ++l+   G++     f   + + +g+++   +  +++  e++a+++  +++ +++++ 
  MMETSP1061-20121228|12291_1 386 AEVEEIPEDLHDlSPEEQqVAIKLKAFkMLAIGTVMVVYFSDPMVDVMQEIAVKAGIPPFYVSFVLAPLASNSSEVLASVFYAAKKtrkTMTVSLSALEGAACMNNTFC--LCIFMGLIYMRGLAWQYT-AETAAIVIVQFIMAYLVQND 532
                  5667788877777787654677776551555679***********************************************9988522146666666666655555554..334556677777777765.799**********9998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 2392.83
//
Query:       MMETSP1061-20121228|12293_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 359.97
//
Query:       MMETSP1061-20121228|12294_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 1842.11
//
Query:       MMETSP1061-20121228|12295_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     6e-105  347.9   0.0   8.7e-105  347.3   0.0    1.2  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    4.2e-17   60.0   0.0    7.2e-09   33.2   0.0    2.1  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    6.8e-08   30.0   0.0    1.4e-06   25.8   0.0    2.0  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  347.3   0.0  6.4e-108  8.7e-105       2     245 .]      31     283 .]      30     283 .] 0.96

  Alignments for each domain:
  == domain 1    score: 347.3 bits;  conditional E-value: 6.4e-108
    TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpeldekderspkkdrryaklkkkelPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtgiPlvyeldeelkpv.........kkkylgdeeavaaaaeavanqGk 245
                   lvlvrhGes Wn  n+ftGW+d  ls+ G+ ea+e+gkl+ e++++ +va+ts+ krai+tl+ vl+++d++w+pv+ksW++nerhyG lqGldk++t++k+G++qv +wrrs+dv+Pp +d+ +e++p +d+rya+l+     +tesl+ t+erv+Pywe++iapel++g++v+i+ahGnslralvkhl++++++ei elniPtg Plvyeld++lkp+         + +ylgd++a++a+ e v nq k
  MMETSP1061-20121228|12295_1  31 TLVLVRHGESTWNLANKFTGWYDCPLSDAGHVEAAEGGKLISEAGIKANVAFTSMQKRAIRTLWHVLEQTDRMWIPVTKSWKINERHYGGLQGLDKQQTVDKFGKDQVLVWRRSYDVPPPTVDKTSEHHPANDERYADLEDWPEEFTESLATTLERVVPYWEESIAPELTDGRTVVIAAHGNSLRALVKHLDGIDESEIAELNIPTGTPLVYELDDDLKPIpqegafaplQGRYLGDQDAIRARIEGVKNQTK 283
                  69*******************************************************************************************************************************************9999************************************************************************99873332222224579****************976 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   5.3e-12   7.2e-09       1      99 [.      32     138 ..      32     151 .. 0.82
   2 !   25.0   0.0   1.7e-09   2.3e-06      91     172 ..     154     238 ..     149     241 .. 0.90

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 5.3e-12
    TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrelAellaeklk...lpiekddrLrEmdfGdwEgksydeisekyp..el 99 
                  l+L+RHge  +n  +++ G  D+pL++ g+ +aa+  + +  +  k++  ++S  +R+ ++  ++ e+++   +p++k+ +++E ++G  +g + ++ ++k+   ++
  MMETSP1061-20121228|12295_1  32 LVLVRHGESTWNLANKFtGWYDCPLSDAGHVEAAEGGKLIseAGIKANVAFTSMQKRAIRTLWHVLEQTDrmwIPVTKSWKINERHYGGLQGLDKQQTVDKFGkdQV 138
                  78*********************************999994455677778********9988777755542225779999************999999888875444 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 1.7e-09
    TIGR03162  91 eisekypeldawakdlaharvpgGEsvadfsqRveefleelake...ekenvlivtHgGvirallahllglpleqllsieveygs 172
                  + se++p+ d+ ++dl +      Es+a+  +Rv   +ee ++    ++++v+i +Hg  +ral+ hl g++ +++ ++++++g+
  MMETSP1061-20121228|12295_1 154 KTSEHHPANDERYADLEDWPEEFTESLATTLERVVPYWEESIAPeltDGRTVVIAAHGNSLRALVKHLDGIDESEIAELNIPTGT 238
                  6678889999****************************998776687899999**********************9999998885 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   9.9e-10   1.4e-06       1      91 [.      31     125 ..      31     140 .. 0.85
   2 ?    2.1   0.0     0.017        24     117     165 ..     178     223 ..     167     235 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 9.9e-10
    TIGR03848   1 tvllvrhgrstantaktLaGrtpGveLderGreqaaalaerladlpiaaiv..ssPlercretveaiaear...glevavderltevdYGdWtGre 91 
                  t++lvrhg st n a++++G+ +   L++ G+  aa+  + +++  i+a v  +s  +r+ +t+ +++e++    ++v+   +++e +YG  +G +
  MMETSP1061-20121228|12295_1  31 TLVLVRHGESTWNLANKFTGWYD-CPLSDAGHVEAAEGGKLISEAGIKANVafTSMQKRAIRTLWHVLEQTdrmWIPVTKSWKINERHYGGLQGLD 125
                  89********************7.89**************999877776442279999**********998654567777889*******999965 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.017
    TIGR03848 117 ealaevqaravaavreldarleeehgpdavwvavshgDviksvladalG 165
                  e+la++  r+v     +++ ++ e  ++ + v+ +hg+ +++++ +  G
  MMETSP1061-20121228|12295_1 178 ESLATTLERVV---PYWEESIAPELTDGRTVVIAAHGNSLRALVKHLDG 223
                  67777777765...578999999999**************999876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 1383.44
//
Query:       MMETSP1061-20121228|12297_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-10   36.6   0.0    3.6e-10   36.1   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0   8.8e-14   3.6e-10      53     254 ..     234     430 ..     202     460 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 8.8e-14
    TIGR03903  53 llFavFeyveGrtlrevLa.adGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdv...slPsaiaghpLg..evLRkalnkdvrqRaasaealaerfralelaalvG 254
                  +++ + e+ +G  + + +   +  L + e +r+  q L a+ +  ++ ++ RD+kP+nim   +  +s+ +++DFG g+    v  +d       t + G+  Y +Pe   + + t k+D+++ G+ +   + G +  + ++  ++++k ++P +     lP++ + +p +  ++L++ l+ + ++R++++ ++ er+  +++     
  MMETSP1061-20121228|12297_1 234 VIYLITELCAGGDMIQYMSrREEDLRTDEVSRISYQLLSAIDHCAKNNIINRDIKPENIMFVSSASDSELRLIDFGSGTD--RV--ID----GMHTTFAGTAFYISPEMFQN-TYTQKTDVWSAGVCLYVLVAGYPSDKLQTAFNIMHK-ITPGERnlkNLPNMPENLPESyyKMLKELLEYKHKKRKTAS-QILERSDFVRFHKFAS 430
                  677778888877766665416788999*************************************************8873..22..22....4455678*********9876.78**********999999999988888888888765.77776512257999898885433899999999999997655.5559999999887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.37
# Mc/sec: 2347.27
//
Query:       MMETSP1061-20121228|12296_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 3016.20
//
Query:       MMETSP1061-20121228|12300_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 780.46
//
Query:       MMETSP1061-20121228|12298_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 897.53
//
Query:       MMETSP1061-20121228|12302_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 476.31
//
Query:       MMETSP1061-20121228|12305_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.56
# Mc/sec: 148.20
//
Query:       MMETSP1061-20121228|12299_1  [L=1288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.13s 00:00:00.68 Elapsed: 00:00:00.28
# Mc/sec: 5862.14
//
Query:       MMETSP1061-20121228|12304_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-29   99.4   0.1    5.9e-29   98.5   0.1    1.5  1  TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit
    4.9e-13   46.9   0.0    8.9e-13   46.0   0.0    1.4  1  TIGR02222 chap_CsaA: export-related chaperone CsaA
    2.3e-05   20.7   0.0    4.2e-05   19.8   0.0    1.3  1  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00399  metG_C_term: methionine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.5   0.1   4.4e-32   5.9e-29       8     138 ..     251     381 ..     223     382 .. 0.82

  Alignments for each domain:
  == domain 1    score: 98.5 bits;  conditional E-value: 4.4e-32
    TIGR00399   8 kllseeakkkekkkeeekaeeekkeeitiddfekvdlrvakvkkaerveksdkLlkLklDlGeek.rqvvsGiaeaYtpeeLvgkkvivvaNLkPaKlfGvkSeGmilaaeddgk.dlallspdkevkaGerv 138
                  k + +++++++++k ++k++++++      + + +d+rv+k+ ka + ++s+kL+  ++DlGee  rq+ sG+++ Y+ eeL+g+ v+v++NLk +Kl+G  S+Gm+l a + ++  +  ++p +++  G+r+
  MMETSP1061-20121228|12304_1 251 K-K-SKKEANAASKGKQKQQQQQAAAAAGFNVSALDIRVGKIVKAWHHPDSEKLFCEEIDLGEEApRQIASGLRAFYKTEELEGRRVLVLCNLKSRKLVGFPSHGMVLCASNADHtAVECMEPPEDAPIGTRI 381
                  2.1.223333333444444444445555556789**************************************************************************9887765489999999*******99 PP

>> TIGR02222  chap_CsaA: export-related chaperone CsaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   6.5e-16   8.9e-13       5     106 ..     281     381 ..     278     382 .. 0.89

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 6.5e-16
    TIGR02222   5 ekvdlrvGriveaedfpkarkPayklkvdlGeelGvkkssaqitklykkeelvgrlvvavvnfppkriaglksevlvlGvidee.gevvllqpdrevklGtkv 106
                  + +d+rvG+iv+a ++p++ k  +  ++dlG e   ++ ++ + + yk+eel gr+v++ +n+ ++++ g+ s  +vl + +++   v  ++p ++ + Gt++
  MMETSP1061-20121228|12304_1 281 SALDIRVGKIVKAWHHPDSEKL-FCEEIDLG-EEAPRQIASGLRAFYKTEELEGRRVLVLCNLKSRKLVGFPSHGMVLCASNADhTAVECMEPPEDAPIGTRI 381
                  679****************996.6779****.55678888899***********************************9988651568889999******998 PP

>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0     3e-08   4.2e-05      44     149 ..     283     380 ..     272     386 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3e-08
    TIGR00472  44 kgvvvGkvlevekhPnadkLkvckVdigekellqivcgaknveagkkVvvAlegAkLpnglkIkksklrGveSeGMlCSleELgleeeklsdgiivLdedaelgkd 149
                    + vGk+++   hP+++kL   ++d+ge++++qi +g + + + +     leg  +     +k++kl G +S+GM+  ++    +      + ++ +eda++g++
  MMETSP1061-20121228|12304_1 283 LDIRVGKIVKAWHHPDSEKLFCEEIDLGEEAPRQIASGLRAFYKTEE----LEGRRVLVLCNLKSRKLVGFPSHGMVLCASNADHTAV----ECMEPPEDAPIGTR 380
                  4599***********************************99998876....68888887788**************755554333332....46666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       326  (0.0794734); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2074.11
//
Query:       MMETSP1061-20121228|12307_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     7e-156  516.1   1.7   8.3e-156  515.9   1.2    1.0  1  TIGR00425 CBF5: putative rRNA pseudouridine synthase
    6.3e-30  102.3   0.2    4.8e-18   63.5   0.0    3.0  2  TIGR00431 TruB: tRNA pseudouridine synthase B
    2.4e-09   35.0   0.9      5e-09   34.0   0.7    1.5  1  TIGR03684 arCOG00985: arCOG04150 universal archaeal PUA-domain protein
    2.8e-09   35.0   0.5    5.9e-09   34.0   0.4    1.5  1  TIGR00451 unchar_dom_2: uncharacterized domain 2
    1.2e-05   22.1   0.0      2e-05   21.3   0.0    1.3  1  TIGR01213 TIGR01213: TIGR01213 family protein


Domain annotation for each model (and alignments):
>> TIGR00425  CBF5: putative rRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  515.9   1.2    1e-158  8.3e-156       1     322 []      44     368 ..      44     368 .. 0.99

  Alignments for each domain:
  == domain 1    score: 515.9 bits;  conditional E-value: 1e-158
    TIGR00425   1 lkkleklivkeeaetnidyGsnPlkrdieeyikkGvvnldkPsgPsshevvawvrrilrvektGhsGtldPkvtGvlivaieratrlvkllqeagkeyvclvrlhrdvkeedlervleeltGklfqrPPlksavkrqlrvrtiyelellevdgkd..vlfrvsceaGtyirklcedlGellGvgahmqelrrvrsGalee.delvtlhdlldayvlykedgdesylrevikPlevalaelkrvvvkdsavdaicyGadlavrGlakledgiekedtvvvitlkgeavavgkalmstkdiaaadkGvvvdvkrvlmergvyPrkwk 322
                  lk+ ++l v+++++t+ ++Gs+Pl r++++++++Gv+nldkP +Psshevv+w+++ilrvektGhsGtldPkvtG+liv+i+ratrlvk +q+agk yv++ rlh + + ++++r++e+ltG+lfqrPPl+savkrqlr+rtiy+l+l+++d+ +  ++++v ceaGtyir+lc++lG+l  +g+hmqelrrvrsGal+e d+lvt+hd+lda+++y+ ++desylr+v++Plev+l+++kr+vvkdsav+aicyGa+ +++Gl+++ dgie++d+vv++t+kgea+av++a+m+t  +a++d+Gvv+++krv+mer+vyPr+w+
  MMETSP1061-20121228|12307_1  44 LKNYHQLHVRTSHYTPLPCGSSPLARPLDQHLSYGVINLDKPANPSSHEVVSWIKKILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKTYVAVARLHAACDVTKVQRSVETLTGALFQRPPLISAVKRQLRIRTIYKLKLVQYDEDRnlGILWVDCEAGTYIRTLCVHLGLLTAAGGHMQELRRVRSGALTEnDNLVTMHDVLDAQYVYDTTKDESYLRRVVMPLEVLLTNYKRIVVKDSAVNAICYGAKFMIPGLLRFADGIELNDEVVLMTTKGEAIAVAIAQMTTSVMATVDHGVVAKIKRVIMERDVYPRRWG 368
                  57899***************************************************************************************************************************************************9998999*****************************************99**************************************************************************************************************************5 PP

>> TIGR00431  TruB: tRNA pseudouridine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   5.8e-21   4.8e-18       3      78 ..      78     153 ..      76     160 .. 0.95
   2 !   34.7   0.1   3.8e-12   3.1e-09     135     200 ..     176     242 ..     148     252 .. 0.86

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 5.8e-21
    TIGR00431   3 gvllldkpqgltsfdalakvkrllkvkkvGHtGtLDplaeGvlvllvGkatklseylteldkeYeaeirlGvrtdt 78 
                  gv++ldkp   +s++++  +k++l+v+k GH+GtLDp ++G l++++ +at+l++   ++ k+Y a++rl    d 
  MMETSP1061-20121228|12307_1  78 GVINLDKPANPSSHEVVSWIKKILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKAQQSAGKTYVAVARLHAACDV 153
                  99*******************************************************************9887775 PP

  == domain 2    score: 34.7 bits;  conditional E-value: 3.8e-12
    TIGR00431 135 everkarkvtvfdlkllgkkeqe.el.elevkCskGtYiRalardlgeklgsgAyvseLrRtrvgkfs 200
                  +v+r+ r  t+++lkl+  ++++ +l  l v C +GtYiR+l  +lg    +g +++eLrR r+g ++
  MMETSP1061-20121228|12307_1 176 AVKRQLRIRTIYKLKLVQ-YDEDrNLgILWVDCEAGTYIRTLCVHLGLLTAAGGHMQELRRVRSGALT 242
                  578889999********6.44333552689**********************************9875 PP

>> TIGR03684  arCOG00985: arCOG04150 universal archaeal PUA-domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.7   6.1e-12     5e-09      70     142 ..     281     352 ..     242     358 .. 0.88

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 6.1e-12
    TIGR03684  70 lekkvvvVDeGAvkfiinGAdvmapGivevdeeikegdivvvveekhrkplavgvalmdaeeiveekkGkavk 142
                   + k++vV + Av++i  GA  m+pG + + + i+ +d vv ++ k ++ +av +a m  + +   + G ++k
  MMETSP1061-20121228|12307_1 281 TNYKRIVVKDSAVNAICYGAKFMIPGLLRFADGIELNDEVVLMTTK-GEAIAVAIAQMTTSVMATVDHGVVAK 352
                  455999*************************************999.*****************999998876 PP

>> TIGR00451  unchar_dom_2: uncharacterized domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.4   7.2e-12   5.9e-09      25     102 ..     278     354 ..     256     359 .. 0.87

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 7.2e-12
    TIGR00451  25 klkeekklvkvdegavkFllngadvlkPGiveadedikekdvvvvvdenkdralavGialvsgeeikevekGkavkvi 102
                   l  ++k+++v+  av+ +  ga+ + PG+  + + i+ +d vv++  +  +a+av ia +++  +  v++G + k+ 
  MMETSP1061-20121228|12307_1 278 VLLTNYKRIVVKDSAVNAICYGAKFMIPGLLRFADGIELNDEVVLMTTK-GEAIAVAIAQMTTSVMATVDHGVVAKIK 354
                  456789***********************************99998876.99********************988765 PP

>> TIGR01213  TIGR01213: TIGR01213 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   2.5e-08     2e-05     267     354 ..     129     216 ..     109     219 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 2.5e-08
    TIGR01213 267 eevkeekar.kvYrAlvevddkvsdedleelvkeLegatikqrtPkRvlhrRadlvReRrvyevdlskvddn..hleliieaegGlYikeL 354
                    vk ++   k+Y A   +++  +  ++++ v+ L+ga + qr P   + +R   +R+R +y+++l + d++     l + +e+G+Yi+ L
  MMETSP1061-20121228|12307_1 129 RLVKAQQSAgKTYVAVARLHAACDVTKVQRSVETLTGA-LFQRPPLISAVKRQ--LRIRTIYKLKLVQYDEDrnLGILWVDCEAGTYIRTL 216
                  3444444436**************************86.689***99888885..899********999886424456799*******987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1715.86
//
Query:       MMETSP1061-20121228|12308_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 2335.47
//
Query:       MMETSP1061-20121228|12303_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2347.52
//
Query:       MMETSP1061-20121228|12310_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1736.16
//
Query:       MMETSP1061-20121228|12311_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 1440.88
//
Query:       MMETSP1061-20121228|12312_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1625.12
//
Query:       MMETSP1061-20121228|12313_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.3   0.0      0.033   12.0   0.0    1.2  1  TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerases, RpiB/LacA/LacB family


Domain annotation for each model (and alignments):
>> TIGR00689  rpiB_lacA_lacB: sugar-phosphate isomerases, RpiB/LacA/LacB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0     8e-06     0.033      33     100 ..      45     118 ..      22     134 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8e-06
    TIGR00689  33 leldesvdYPdyakkvaekvveneaslG..ilicgtGiGvsia....AnkvkgiraalvvdektAklareHnda 100
                  ++++++  Y dya +   k v+++a  G   ++ gtGiG  ++    A + +  +  l ++e+ A  ++ +nd 
  MMETSP1061-20121228|12313_1  45 QDYSQDSLYADYARQQQAKEVAGKAPFGwsKILIGTGIGWVVGgkvhAQRKEKKLNILHKKEQKALYSQYYNDV 118
                  45677888******999999999999885535668999876532222888888888888889999888888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       255  (0.0621648); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 839.93
//
Query:       MMETSP1061-20121228|12314_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-21   74.0   0.0      1e-20   71.8   0.0    2.1  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
     0.0034   14.6   0.0        3.6    4.7   0.0    3.3  3  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
  ------ inclusion threshold ------
      0.029   10.5   0.0      0.042    9.9   0.0    1.2  1  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.24   3.3e+02       2      17 ..     269     284 ..     268     301 .. 0.78
   2 !   71.8   0.0   7.3e-24     1e-20      44     173 ..     337     480 ..     318     483 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.24
    TIGR03162   2 yLiRHgevevnkgkcY 17 
                  yL RHg+ e n   + 
  MMETSP1061-20121228|12314_1 269 YLTRHGQSEYNLLGKI 284
                  899****999877766 PP

  == domain 2    score: 71.8 bits;  conditional E-value: 7.3e-24
    TIGR03162  44 fdavvsSplsRcrelAella..............eklklpiekddrLrEmdfGdwEgksydeisekyp.eldawakdlaharvpgGEsvadfsqRveefleelakeekenvlivtHgGvirallahllglpleqllsieveygsi 173
                    ++++S l+R+re+A++l+              e  + + +   +L E+  G  +g++y+ei+e +p e+++  +d  ++r p GEs++d++ R e +++e+ +   e +liv+H+G++r+l+a++ gl+ +++  ++++  ++
  MMETSP1061-20121228|12314_1 337 PCRLWTSTLRRTRETAQFLKhstfnhtfdngdhlEWVQFRPKPRRNLDELYAGTCDGMTYKEIEEVFPeEFSRRQADKLSYRYPRGESYMDVTLRLEPLAQEMERI-REPLLIVGHQGILRILYAYFMGLDRKEAPYVSIPLNNV 480
                  4589************************998755555666677889********************************************************9998.9**********************999998888777666 PP

>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0026       3.6       4      44 ..     269     307 ..     266     312 .. 0.82
   2 ?    1.5   0.0     0.025        35      33      68 ..     321     356 ..     316     407 .. 0.80
   3 !    4.2   0.0    0.0039       5.4     144     208 ..     418     478 ..     393     505 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0026
    TIGR01258   4 vlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllke 44 
                   l rhG+se+n + +  G  d  l+  G e a++ +   ke
  MMETSP1061-20121228|12314_1 269 YLTRHGQSEYNLLGKIGG--DSGLTPAGLEYARRLSIFAKE 307
                  589************999..889999999988877666555 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.025
    TIGR01258  33 eeakeagkllkeeklefdvaytsllkraiktlnivl 68 
                   eak++ +l  e+  ++  ++ts l+r+ +t++++ 
  MMETSP1061-20121228|12314_1 321 GEAKSGDELNSENSERPCRLWTSTLRRTRETAQFLK 356
                  58888888888888888899**********998764 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0039
    TIGR01258 144 elPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtg 208
                    P +es  d+  r+ P  +++  +++   + +liv h   lr l+ ++ +l+ +e   + iP  
  MMETSP1061-20121228|12314_1 418 RYPRGESYMDVTLRLEPLAQEM--ERI--REPLLIVGHQGILRILYAYFMGLDRKEAPYVSIPLN 478
                  5677777777777777765543..233..3569**********************9999999965 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   3.1e-05     0.042     360     436 ..      55     137 ..      35     157 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 3.1e-05
    TIGR03925 360 eephllvlGdsesGktallraiaeevvernspeearlvvvDyrrsllga......vpeeylagyaassaaveeliaelaelle 436
                  ++  ++++G   +Gkt + + i++ +   ++  +  + v Dyrr+l ga       + e   g a  + a+++++a+l+e+++
  MMETSP1061-20121228|12314_1  55 DKLVIVMVGLPATGKTHIAKRICRFLSFFHDIPSQIFNVGDYRRQLCGAqqpasfYNPENADGVAQRKVACDAALADLMEYMS 137
                  44456778******************998888888999**********95444433344555666666667777777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 2696.35
//
Query:       MMETSP1061-20121228|12316_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1776.35
//
Query:       MMETSP1061-20121228|12317_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1866.18
//
Query:       MMETSP1061-20121228|12315_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 2326.31
//
Query:       MMETSP1061-20121228|12318_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1579.16
//
Query:       MMETSP1061-20121228|12321_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 805.83
//
Query:       MMETSP1061-20121228|12319_1  [L=1721]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-07   27.4   0.4      0.049   11.0   0.0    3.8  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    1.3e-06   24.5   0.0    0.00072   15.3   0.0    2.1  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.2   3.8e-05     0.079     134     230 ..    1031    1127 ..    1006    1130 .. 0.88
   2 ?   -2.6   0.0      0.33   6.8e+02     138     194 ..    1138    1194 ..    1129    1199 .. 0.81
   3 !   11.0   0.0   2.4e-05     0.049     132     223 ..    1292    1385 ..    1274    1413 .. 0.82
   4 ?    0.7   0.0     0.033        68     103     128 ..    1584    1611 ..    1575    1655 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.8e-05
    TIGR02521  134 parsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaakeyeaqLq 230 
                    +r+y  ++  a++ +++e+a+k  ++  k++p  ++  le  +l+ + g++ +  ++l    +  e +   L+ +i+ +++ g+   a+e+ ++L+
  MMETSP1061-20121228|12319_1 1031 HWRVYLELADLAKRSNRFEEARKLYQQVYKLQPYASQGWLEFSKLEEECGNMNACAKILSAGLEYCEYSESLLTRAIKHEEKRGNLGRAREFLSRLK 1127
                   578999999999****************************************************99***999**************99999999987 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.33
    TIGR02521  138 yeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAraller 194 
                       ++  ++ag++  a+  l+ +++  p + +  le  +l+ + g+ +eA a++er
  MMETSP1061-20121228|12319_1 1138 VLEGAMLEARAGNDVMARRVLKYLMHHVPWYGPLYLEAYKLEKDLGRSKEALAVVER 1194
                   555566778899999999999999999999999999999999999999999888776 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 2.4e-05
    TIGR02521  132 eqparsyeNaglcalkagdtekaekyltralki..dpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgdaaaak 223 
                   + +++++  ag    +ag+ + a+  + ra ++  d++r+++lle a+l+   g++  A a+l r  ++ + + +  +  + +a ++g++ +a 
  MMETSP1061-20121228|12319_1 1292 NLRWKVWLAAGRMEVAAGNSDTARRLFLRAHRVvpDKGRAVALLECARLEEFVGDVELASAILCRSRNVGGSDWKVWLESVMLAIRNGNYPKAI 1385
                   568999************************887447789999*********************9988887766554444566777777766665 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.033
    TIGR02521  103 NNYG..tFLcqqkkyeeAeqqfeaAied 128 
                    NYG  +F c+ + +e A + + +A++ 
  MMETSP1061-20121228|12319_1 1584 PNYGplWFHCRSGPTETARNVLARAVNF 1611
                   5999999******************975 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.5e-07   0.00072     503     664 ..    1036    1198 ..    1028    1223 .. 0.92
   2 !    6.8   0.0   0.00013      0.27     602     700 ..    1296    1396 ..    1288    1435 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.5e-07
    TIGR02917  503 anLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspellellgraq.laakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLel 664 
                    +LA+l+   ++ ++A++ +++v + +p   +  l++++l+++ gn ++ +++l++  e  +  +++    +++ ++ g+l +a + l  +  +  +++    l g ++   a++   a++++k l+   p  ++ +l++ +  +    +++Al +++++L+ 
  MMETSP1061-20121228|12319_1 1036 LELADLAKRSNRFEEARKLYQQVYKLQPYASQGWLEFSKLEEECGNMNACAKILSAGLEYCEYSESLLTRAIKHEEKRGNLGRAREFLSRLKHVGIEKVWRTVLEGAMLeARAGNDVMARRVLKYLMHHVPWYGPLYLEAYKLEKDLGRSKEALAVVERGLAA 1198
                   68*******************************************************999999999999**********************999888887777777665145788889****************************************99986 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00013
    TIGR02917  602 ellellgraqlaakdlkkavesfkkllelqpdsala..lllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllkelekqkp 700 
                   +++++ gr+  aa++++ a++ f  +  + pd++ a  ll+ a   +++ +++ A   l ++ +  +  ++  l  + L++ +++  +A+ l+++  +q+ 
  MMETSP1061-20121228|12319_1 1296 KVWLAAGRMEVAAGNSDTARRLFLRAHRVVPDKGRAvaLLECARLEEFVGDVELASAILCRSRNVGGSDWKVWLESVMLAIRNGNYPKAIALSQKALQQHS 1396
                   57888899999999999999999999999999875511566788999999999999999999999999899999999999999999999999988777664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1721 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.76u 0.15s 00:00:00.91 Elapsed: 00:00:00.70
# Mc/sec: 3245.05
//
Query:       MMETSP1061-20121228|12320_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.2e-116  385.1  22.4     1e-115  384.7  15.5    1.0  1  TIGR00836 amt: ammonium transporter
    1.7e-69  232.4  21.6    3.2e-67  224.9  15.0    2.7  1  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  384.7  15.5  5.1e-119    1e-115       3     402 ..      44     469 ..      42     471 .. 0.92

  Alignments for each domain:
  == domain 1    score: 384.7 bits;  conditional E-value: 5.1e-119
    TIGR00836   3 awllvaaalVflmqpGlalLeaGlvrsknvlnillknlldlavvillyvllGyslafgeeaetvngfiGtskfglknkvlkesskeelpelvfflfqlvFaaiaaaivsgavaeRikfsayllfsvllltlvyppvahwvwgtgGwlal.........klgvlDFAGstvVHlvgGvagLvaalvlGpRigrf.........eseaikphnvplvvlGtflLwfGWfgFNaGSalaang.....laalaavnTtlaaaagaltallieylkeg......kptvlgaingilaglvaitagagvvepwaalviGvvagvlvllavsklkkklkiDDpldvfavHgvaGiwGlilvglfaaekvvasagtagss.........llggnakqllvqligilvilvysfvvtliillilkkvigLRvseeeEklGlDlaehg 402
                  ++l+ +aalVf+mq+G+a+++aG+vr+knv n +lknlld++   ++y+++Gy++afg+  ++ ngfiGt++f+l +          + +++f++f+++F+a++a+iv+g +aeR+++ ayl +s++l++lvyp+v+h +w++ G+l +           gv+DFAG++vVHlvgG+ +L a+++lGpR+grf         +++ +++h+++l +lGtf+LwfGW+gFN+GSal a++     l++l avnTtl++ +g+l+al+++ +  +        ++ +a+ng l+glvaitag+gvvepwaa++iG ++g+  +++ s l  +l++DD++d+++vH ++GiwGl++vg++a++ +  +++ ++ +           +g a +l +ql+gil+il +++v+++++++ l+  +  R ++ eE++GlD++ hg
  MMETSP1061-20121228|12320_1  44 IFLVYSAALVFFMQAGFAMICAGSVRKKNVGNSMLKNLLDACGAAVAYYSFGYAFAFGDG-SNPNGFIGTTHFFLIG----------VDNYAFWMFEYAFSAASATIVAGTLAERCQMAAYLCYSFVLAGLVYPVVSHAIWSPHGFLTSnvaqenklfGSGVVDFAGGGVVHLVGGCTALFATMILGPRRGRFhddegrkldKPNTFPGHSIALQMLGTFILWFGWYGFNSGSALIATSddpgrLVSLSAVNTTLSGGMGGLVALFVNLFILErrlgepIFDLRMAMNGSLSGLVAITAGCGVVEPWAAVLIGGISGL-LYIGGSSLLIRLRLDDAVDAIPVHMINGIWGLLAVGFVASPRYLDMTYGTKVAhvgwfyslaRENGDARLLAAQLVGILFILSWCLVIMMPFFIWLDWKGWFRSDPLEEIVGLDTSYHG 469
                  79********************************************************87.669***********99..........44689**************************************************88887777777777779****************************************************************************666667899********************99986533211222256999********************************65.5666668***********************************9988777766689998874444455699***********************************************98 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  224.9  15.0   1.6e-70   3.2e-67       6     345 ..      44     408 ..      40     472 .. 0.81

  Alignments for each domain:
  == domain 1    score: 224.9 bits;  conditional E-value: 1.6e-70
    TIGR03644   6 flflvsgalvmwmaaGfamleaGlvrskntteiltknvalfaiaaimyllvgynlmypgdalllegileafllaalesvadleagseedaayssasdfffqvvfvatamsivsGavaerlklwaflvfavvltaliyPvegswkwgg.Gll..........selgfsdfaGsgivhlaGaaaalagvlllGarkGkygkd.ge....vkaipgsnlplatlGtfilwlGwfGfnGgsqlalsdvedanavakifvntnaaaaaGaiaalllakllfgk......adltmvlnGalaGlvaitaePlaPsllaatliGavgGvlvvlsivlldklkiddpvGaisvhgvaGifGllvvpltn..................a 345
                  ++++ s+alv++m aGfam+ aG vr+kn+ + + kn+   + aa+ y+ +gy+ ++ gd+   +g++     ++++ +     g +   +y   + ++f   f a++++iv+G++aer ++ a+l ++ vl++l+yPv ++  w+  G+l             g +dfaG g+vhl+G+ +al + ++lG+r G++++d g+     +++pg +++l  lGtfilw+Gw+Gfn gs l  ++ +    v+   vnt ++  +G + al++   + ++       dl m +nG+l+Glvaita     +++aa+liG ++G+l + +  ll +l++dd+v ai+vh++ Gi+Gll+v +                     
  MMETSP1061-20121228|12320_1  44 IFLVYSAALVFFMQAGFAMICAGSVRKKNVGNSMLKNLLDACGAAVAYYSFGYAFAF-GDGSNPNGFI-----GTTHFFL---IGVD---NY---AFWMFEYAFSAASATIVAGTLAERCQMAAYLCYSFVLAGLVYPVVSHAIWSPhGFLtsnvaqenklFGSGVVDFAGGGVVHLVGGCTALFATMILGPRRGRFHDDeGRkldkPNTFPGHSIALQMLGTFILWFGWYGFNSGSALIATSDDPGRLVSLSAVNTTLSGGMGGLVALFVNLFILERrlgepiFDLRMAMNGSLSGLVAITAGCGVVEPWAAVLIGGISGLLYIGGSSLLIRLRLDDAVDAIPVHMINGIWGLLAVGFVAspryldmtygtkvahvgwF 408
                  34556899*******************************999***************.5555889999.....2222222...2322...34...569******************************************999998768876544432111235899******************************7662334443789******************************99999999*************999999999887777553333336************************************************************************99874455444444444444440 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 2181.94
//
Query:       MMETSP1061-20121228|12322_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.7    4.2   8.9          4    3.6   6.2    1.3  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   6.2   0.00098         4      62     125 ..     106     171 ..      84     187 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.00098
    TIGR03490  62 snnksnseekdeeepkskkpekkpdps.knkeeiekpkkepkkpd.kkpqadepnndhadqknnnk 125
                  +++ s+s ++++++ +s++++++ d   +++e+  kp   p+ +d   ++ad++++  ad ++ n 
  MMETSP1061-20121228|12322_1 106 TTEISESRNDSQSKSSSSSSKSNSDDKeEEEEDHPKPGTVPESIDlLSSDADDNDGMFADATEANP 171
                  444456666666666666555554444044444556788899999889999999888888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 971.06
//
Query:       MMETSP1061-20121228|12324_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2011.70
//
Query:       MMETSP1061-20121228|12364_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.31
# Mc/sec: 293.78
//
Query:       MMETSP1061-20121228|12350_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1333.09
//
Query:       MMETSP1061-20121228|12379_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 763.24
//
Query:       MMETSP1061-20121228|12384_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 1561.87
//
Query:       MMETSP1061-20121228|12388_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 989.92
//
Query:       MMETSP1061-20121228|12404_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|12439_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.33
# Mc/sec: 203.98
//
Query:       MMETSP1061-20121228|12456_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00044   17.9   0.8       0.11   10.1   0.1    2.5  2  TIGR00336 pyrE: orotate phosphoribosyltransferase
  ------ inclusion threshold ------
       0.02   11.7   1.1      0.056   10.2   0.1    2.0  2  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
       0.17    8.7   6.6        3.4    4.4   0.8    3.7  4  TIGR03418 chol_sulf_TF: putative choline sulfate-utilization transcription factor


Domain annotation for each model (and alignments):
>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   8.3e-05      0.11     107     163 ..      38      94 ..      34     101 .. 0.89
   2 !    5.7   0.0    0.0017       2.4     104     143 ..     171     209 ..     165     234 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 8.3e-05
    TIGR00336 107 egkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsaeeevekeyelk 163
                  +++k +v+  v+  G++++ a  ++++ + +v +++   dr    a ++++ ++++ 
  MMETSP1061-20121228|12456_1  38 KNNKRLVMTAVTKNGGALRYASDELRNTEPIVLAAVTQNDRALSLASDQMKNNQKVV 94 
                  4568899999*********************************99999999987775 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0017
    TIGR00336 104 elkegkkvvvveDvittGtsileaveaiqeagaevagviv 143
                  el+++++v v+  v+  G +++ a ea+++++ +v ++++
  MMETSP1061-20121228|12456_1 171 ELQNNERV-VMAAVTRDGCALRWASEALRNNDQIVMAAVA 209
                  56777776.5678*********************999876 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1   4.1e-05     0.056      62     104 ..      85     126 ..      72     130 .. 0.72
   2 ?   -1.4   0.0      0.15     2e+02      70     100 ..     178     208 ..     158     247 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 4.1e-05
    TIGR02991  62 sdaeraaGvvaastGnhGralayaakkegvravicmselvpqn 104
                  ++ ++++ vv a++ +hGral ya k+ + +    +s+lv +n
  MMETSP1061-20121228|12456_1  85 DQMKNNQKVVMAAAAQHGRALVYAKKELKNN-ERFLSALVAEN 126
                  334456789**************98887654.44577777776 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.15
    TIGR02991  70 vvaastGnhGralayaakkegvravicmsel 100
                  vv a+    G al +a+++   +  i m+++
  MMETSP1061-20121228|12456_1 178 VVMAAVTRDGCALRWASEALRNNDQIVMAAV 208
                  4555555556666666665555555555543 PP

>> TIGR03418  chol_sulf_TF: putative choline sulfate-utilization transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1     0.046        63      17      46 ..      54      83 ..      41     114 .. 0.76
   2 ?    1.5   0.0     0.019        26     222     242 ..     174     194 ..     156     204 .. 0.82
   3 ?    3.6   0.1    0.0044       6.1     226     242 ..     203     219 ..     196     230 .. 0.80
   4 ?    4.4   0.8    0.0025       3.4     216     242 ..     220     244 ..     206     251 .. 0.74

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.046
    TIGR03418 17 sltaaarelgstqPavsqqvkrleeelgva 46
                 +l  a+ el+ t P v   v++ + +l+ a
  MMETSP1061-20121228|12456_1 54 ALRYASDELRNTEPIVLAAVTQNDRALSLA 83
                 577789999999999999999988887654 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.019
    TIGR03418 222 nytlviqaaiagqGvalGWag 242
                  n   v+ aa++ +G al Wa+
  MMETSP1061-20121228|12456_1 174 NNERVVMAAVTRDGCALRWAS 194
                  5556999************95 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.0044
    TIGR03418 226 viqaaiagqGvalGWag 242
                  ++ aa+a++G+al Wa+
  MMETSP1061-20121228|12456_1 203 IVMAAVAENGLALEWAS 219
                  789************96 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.0025
    TIGR03418 216 gdlrfnnytlviqaaiagqGvalGWag 242
                  ++lr n+   +++aa+a++G+al Wa+
  MMETSP1061-20121228|12456_1 220 QKLRANE--QIVRAALANDGLALEWAS 244
                  5555554..489999999999999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1539.87
//
Query:       MMETSP1061-20121228|12469_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-11   40.7   0.0    5.9e-11   38.7   0.0    1.7  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00071   16.9   0.0     0.0014   15.9   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0     0.028        57      26      47 ..     196     215 ..     185     222 .. 0.83
   2 !   38.7   0.0   2.9e-14   5.9e-11      89     184 ..     328     411 ..     322     417 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.028
    TIGR03903  26 rReialCarLshPnivaLlDsG 47 
                   Re ++  +L hPni++L  +G
  MMETSP1061-20121228|12469_1 196 AREAKILSELDHPNIIKL--QG 215
                  699*************99..45 PP

  == domain 2    score: 38.7 bits;  conditional E-value: 2.9e-14
    TIGR03903  89 LDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLt 184
                  + ++   h++G+v RDLkP n+     d++++ ++ DFG++  ++++            e+ GsP Y aPe +  e  t k D+Y++G++++e  t
  MMETSP1061-20121228|12469_1 328 VSGMQYLHSQGIVLRDLKPGNVG---FDNNKNIRLFDFGMARRVSECV---------PDEMCGSPRYMAPEIMNQEGYTLKVDVYSFGVLLFEFCT 411
                  5678899**************96...58999********987666554.........48*******************************999766 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     7e-07    0.0014      94     140 ..     322     369 ..     306     375 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7e-07
    TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkksk 140
                  +++  +   +  lH++giv  Dl + N+ + +++++ l DfG++++ +
  MMETSP1061-20121228|12469_1 322 DVIPGIVSGMQYLHSQGIVLRDLKPGNVGFdNNKNIRLFDFGMARRVS 369
                  566666677789******************5578899*******9755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1968.84
//
Query:       MMETSP1061-20121228|12492_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.09s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 672.52
//
Query:       MMETSP1061-20121228|12473_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 2196.15
//
Query:       MMETSP1061-20121228|12506_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1061-20121228|12513_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-05   20.3  72.1    6.3e-05   20.2  49.9    1.0  1  TIGR02794 tolA_full: protein TolA
  ------ inclusion threshold ------
        7.6    1.8  21.0        7.7    1.8  14.6    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2  49.9   3.1e-08   6.3e-05     162     237 ..       4      80 .]       1      80 [] 0.87

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 3.1e-08
    TIGR02794 162 EeeakakaaaeakkkaEaeeakkkaeaeak.KakaeaeaKakae.eakaKaeae..AkaKAeaeAkaKaeaeakakakae 237
                  +   kak++aeak++aE +ea+++ae+ea+ Kak+eaeaKa ae eak+Kae+e  A +KA++eA+aKaeaea+a+ kae
  MMETSP1061-20121228|12513_1   4 A--MKAKEEAEAKAAAE-AEARRRAEEEAAmKAKEEAEAKAVAEaEAKKKAEEEalAVKKAKEEAEAKAEAEAEARRKAE 80 
                  3..34577788888888.47********************************999*9*************9999887765 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8  14.6    0.0037       7.7     892     958 ..       9      75 ..       1      80 [] 0.25

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.0037
    TIGR00927 892 deGeieaeedgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgea 958
                  +e e +a  ++e +   +ee + +a+ee e++   e e +++  ++   vk+ ++e+e++ae ++ea
  MMETSP1061-20121228|12513_1   9 EEAEAKAAAEAEARRRAEEEAAMKAKEEAEAKAVAEAEAKKKAEEEALAVKKAKEEAEAKAEAEAEA 75 
                  2222222222222222222222222222222222222222222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       701  (0.170892); expected 82.0 (0.02)
Passed bias filter:                      290  (0.0706972); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 391.08
//
Query:       MMETSP1061-20121228|12511_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1401.60
//
Query:       MMETSP1061-20121228|12542_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|12590_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 476.63
//
Query:       MMETSP1061-20121228|12612_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1435.38
//
Query:       MMETSP1061-20121228|12640_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 1233.59
//
Query:       MMETSP1061-20121228|12648_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 2291.33
//
Query:       MMETSP1061-20121228|12679_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 563.95
//
Query:       MMETSP1061-20121228|12689_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.16s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 338.58
//
Query:       MMETSP1061-20121228|12693_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.8   0.1       0.02   12.1   0.0    1.2  1  TIGR03028 EpsE: polysaccharide export protein EpsE


Domain annotation for each model (and alignments):
>> TIGR03028  EpsE: polysaccharide export protein EpsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.8e-06      0.02     124     198 ..     152     226 ..     143     232 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.8e-06
    TIGR03028 124 kreGkavrkeidvaalfsegesnenillagGdiiyvdrapvfyiyGevqrpGayrlernmtvlqalaqGGGlslr 198
                  k e k v+ ++   + ++ +  + +i  +gG i++ +++ + y    vq pG  r+    tv   +a+G G + +
  MMETSP1061-20121228|12693_1 152 KTEKKFVNSKVMTRQTYTLDGVEGDIENSGGAIVFKEKEGIDYAATTVQLPGGERVPFLFTVKDLVAKGSGDTFK 226
                  334444444455555566677899999*******************************************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1439.11
//
Query:       MMETSP1061-20121228|12712_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1794.07
//
Query:       MMETSP1061-20121228|12713_1  [L=873]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (873 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.30
# Mc/sec: 3840.88
//
Query:       MMETSP1061-20121228|12746_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|12740_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1660.86
//
Query:       MMETSP1061-20121228|12762_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 541.16
//
Query:       MMETSP1061-20121228|12751_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 2265.81
//
Query:       MMETSP1061-20121228|12807_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 413.97
//
Query:       MMETSP1061-20121228|12810_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-46  156.3   0.2    4.6e-46  155.2   0.1    1.5  1  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN
    4.5e-22   76.7   0.0    6.8e-22   76.1   0.0    1.2  1  TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
    6.6e-12   42.7   0.3      8e-06   22.7   0.0    2.9  3  TIGR01330 bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase


Domain annotation for each model (and alignments):
>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.2   0.1   3.3e-49   4.6e-46       3     251 ..     105     366 ..     103     367 .. 0.89

  Alignments for each domain:
  == domain 1    score: 155.2 bits;  conditional E-value: 3.3e-49
    TIGR02067   3 alalelaeaageailkyfrasdlkvdkksdktpVteADraaEeaireliaakfPddgilGEEfg.............eeeedaeyvWvlDPiDGTksFirGvPvwgtLiaLlekgkpvlGvisqPalgerfvaakgegallnggerelrvsevaklsdAvlvttspk.aledeeereafeklrrkarltryggd.cyayalvAsGrvdlvveaelspyDiaalipiieeAggvitdwkGkeaeeggeavaaanaalhdevlell 251
                  ++a + a++ag++il   +  ++++ k + ++  t  D   E++ire++ ++fPd+++lGEE               + ++++++ W++DPiDGT +F++G+P+    ia ++kg++v+Gvi+ P  +e+f a+kg+g++lng  +++rv e+++l dAv++++sp  ++  + +    ++l  k+r  r+ g+ ++  a +A+Gr     e +ls++D+aa ++i++eAgg +td++G+++   ++  +a+n ++h+e+l +l
  MMETSP1061-20121228|12810_1 105 EVARKAAKKAGDIILGNAGGAEVTERKANSRDLLTLIDPLCEATIRETVLETFPDHDFLGEEDVdpgaeasaaaiddKLNSKNDWLWIVDPIDGTTNFVHGMPLNMPSIAAAYKGEVVVGVIYDPHRDELFSATKGGGSTLNG--EPIRVGEQSELGDAVVAMGSPPaEISMKMSLVGAQALMPKVRTIRMLGSaAIMLAWIANGRLTAYWEYDLSSWDVAAGALIVQEAGGNFTDLAGNPFSLRTRKTVASNGKIHEELLTTL 366
                  789999**************99999999999******************************9632222222222222345678999********************************************************7..8*****************99851556666779999*********998872578899******************************************999999************988 PP

>> TIGR01331  bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   0.0     5e-25   6.8e-22       5     243 ..     107     355 ..      99     359 .. 0.78

  Alignments for each domain:
  == domain 1    score: 76.1 bits;  conditional E-value: 5e-25
    TIGR01331   5 vikiakeAgeeilevyq.kelaveekeDesPvteADlaaeklilekLraltPdiPvlsEEeaeiglke.........retwkrfwLvDPlDGtkeFikrngeFtvniaLveegkPvlGvvyaPvlgvlyfaeagkaakkevddqal..kkkikvreadsealavvisrshaeekvkelleelgaelvvsvgsslkiclvAegsadiYpRlgptseWDtaAgeavlkeaGgeildldgkplaynkreqslrn 243
                    k+ak+Ag+ il     +e++ ++ + +   t  D   e  i e + +++Pd   l EE+ + g +          +++    w+vDP+DGt +F++  +     ia   +g+ v+Gv+y P  ++l++a++g + + + + + +  + ++ +  ++ ++    is +++   +++l+ +   + ++++++++ ++ +A+g    Y  +   s WD aAg  +++eaGg+++dl g+p++   r+    n
  MMETSP1061-20121228|12810_1 107 ARKAAKKAGDIILGNAGgAEVTERKANSRDLLTLIDPLCEATIRETVLETFPDHDFLGEEDVDPGAEAsaaaiddklNSKNDWLWIVDPIDGTTNFVHGMPLNMPSIAAAYKGEVVVGVIYDPHRDELFSATKGGGSTLNGEPIRVgeQSELGDAVVAMGSPPAEISMKMSLVGAQALMPKVR-TIRMLGSAAIMLAWIANGRLTAYWEYDL-SSWDVAAGALIVQEAGGNFTDLAGNPFSLRTRKTVASN 355
                  34667777777776554455555555556679****************************9765443311111111145666789****************************************************9998875440044455555667777778888888888777777764.5678899*****************9976.68**************************9998865555 PP

>> TIGR01330  bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.032        44      32      88 ..     124     180 ..      98     188 .. 0.66
   2 !   15.7   0.0   7.8e-07    0.0011     133     174 ..     187     229 ..     180     244 .. 0.87
   3 !   22.7   0.0   5.9e-09     8e-06     291     332 ..     315     355 ..     293     368 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.032
    TIGR01330  32 aadvkskdDksP..vtvaDygaqaivilvlkeefpddklsivaeedsetLseddsaqvl 88 
                  +a+v+ ++ +s    t+ D    a +   + e+fpd++    +eed +   e+++a + 
  MMETSP1061-20121228|12810_1 124 GAEVTERKANSRdlLTLIDPLCEATIRETVLETFPDHD--FLGEEDVDPGAEASAAAID 180
                  45555555555323788888888999999999999999..8999999988887665555 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 7.8e-07
    TIGR01330 133 kGrhWvLDPiDGtkGflrGdqyav.aLaLienGkvvlgvlgCP 174
                  +   W++DPiDGt  f+ G    + ++a   +G vv+gv+  P
  MMETSP1061-20121228|12810_1 187 NDWLWIVDPIDGTTNFVHGMPLNMpSIAAAYKGEVVVGVIYDP 229
                  5668***************998875799999********9766 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 5.9e-09
    TIGR01330 291 ykekiWDhaaGaviveeaGGvvtDaagkpLDfskGrtLeldk 332
                  y    WD aaGa+iv+eaGG  tD ag+p+     +t++  +
  MMETSP1061-20121228|12810_1 315 YDLSSWDVAAGALIVQEAGGNFTDLAGNPFSLRTRKTVAS-N 355
                  66678************************99888888776.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1534.37
//
Query:       MMETSP1061-20121228|12815_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 389.68
//
Query:       MMETSP1061-20121228|12831_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.32
# Mc/sec: 379.47
//
Query:       MMETSP1061-20121228|12833_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-33  112.3   0.2    1.3e-32  111.1   0.0    1.6  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    2.5e-16   57.6   0.0    3.9e-16   57.0   0.0    1.2  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    8.5e-16   55.8   0.0    1.4e-15   55.0   0.0    1.3  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    6.6e-12   43.3   0.2    5.8e-11   40.3   0.0    2.4  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    2.5e-10   37.8   0.2    2.2e-06   24.8   0.0    2.2  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    2.2e-08   31.9   0.3    0.00019   19.1   0.1    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain
    7.1e-08   29.7   0.0    0.00048   17.1   0.0    2.3  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    3.6e-07   27.7   0.1      5e-06   23.9   0.1    2.4  2  TIGR00436 era: GTP-binding protein Era
    7.7e-07   26.1   0.0    1.1e-05   22.3   0.0    2.2  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    8.2e-06   22.8   0.2     0.0041   13.9   0.0    2.4  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0002   18.8   0.0    0.00044   17.7   0.0    1.5  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
    0.00084   16.0   0.0    0.00084   16.0   0.0    2.1  2  TIGR00437 feoB: ferrous iron transport protein B
     0.0026   14.7   0.1     0.0042   14.0   0.0    1.2  1  TIGR00991 3a0901s02IAP34: GTP-binding protein


Domain annotation for each model (and alignments):
>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.1   0.0   4.2e-35   1.3e-32      21     271 ..     274     520 ..     263     523 .. 0.89
   2 ?   -3.0   0.2       2.4   7.7e+02     188     232 ..     540     584 ..     531     587 .. 0.81

  Alignments for each domain:
  == domain 1    score: 111.1 bits;  conditional E-value: 4.2e-35
    TIGR03596  21 lvDvvievlDARiplssknpeleelvk....nkprlivlnkaDladpektkkwlkyfe.ekgkkalavnakkkkkvkkilkaikkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklskeleLlDtPGilwpkledeevglkLaltgaikdeildkeevalfllellkekypeelkerykleeeee...eeeelleeiakkrglllkggeldleraaeillkelrkgklg 271
                    Dv++ ++DAR    ++  ++e+ ++    +k+ ++vlnk Dl+ + + k+w+  +  ++ + a+  + ++  +  ++++++++  k  ++k        k+i + v+G PNvGKS++iN+l++kk+ kv+  pg Tk  q i+l k+++L+D PG+++    d e+   L   g ++ e l++ e ++++  ++ + ++e+++ +yk+++ee+   +  +lle+ia k g llkgg   ++ aa ++++++++g+l 
  MMETSP1061-20121228|12833_1 274 CSDVILHIIDARNVPGTRCTMIERHIRdnasHKHLVFVLNKIDLVPNWVAKRWMGELAkDRPTIAFHASLTHAFGKGALISLLRQFGKLHEDK--------KQISVGVIGYPNVGKSSVINTLISKKSCKVAPIPGETKIWQYITLFKRISLIDCPGVVVDTAGDTETESVL--KGVVRAERLENPEDFIQA--IVDKVKREHIAGQYKFTKEESkwkDVLQLLETIATKAGRLLKGGDPCIRSAAITIIHDFQRGRLP 520
                  569***************9999988765555899***********************945555666677778888899******999998887........89*************************************************************99987765..799******998876655..67888889999999999999878788999********************************9985 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 2.4
    TIGR03596 188 altgaikdeildkeevalfllellkekypeelkerykleeeeeee 232
                  a++++i+ e  + ++v  + +++ +++ +ee+ e  k+e+ ++++
  MMETSP1061-20121228|12833_1 540 AVVESIEPETQNLDDVGEENMKTDQTEEEEEIDEDEKTESAKNKQ 584
                  678889999999999999999999999999999888888877654 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   1.2e-18   3.9e-16      60     218 ..     270     426 ..     257     442 .. 0.86

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 1.2e-18
    TIGR03597  60 slsekkalvvavvDifdlegslikelkrfvken....kvllvvNKidllpksvklekikewlkkeakeeglkpvdillvsakkkkglkellelikkarekkdvy...vvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipldkesvllDtpGiine 218
                  ++++ + ++++++D  ++ g++ ++++r +++n    ++++v NKidl+p+ v     k+w+ + ak+  + +    l+ a  k  l +ll+   k +e+k+++   v+G  NVGKSs+iN l+++++       + ++pg T     i l k+ +l+D pG++ +
  MMETSP1061-20121228|12833_1 270 KVVDCSDVILHIIDARNVPGTRCTMIERHIRDNashkHLVFVLNKIDLVPNWVA----KRWMGELAKDRPTIAFHASLTHAFGKGALISLLRQFGKLHEDKKQIsvgVIGYPNVGKSSVINTLISKKS-----CKVAPIPGETKIWQYITLFKRISLIDCPGVVVD 426
                  56677889********************998762222689**********9876....78********************************99999986666533378899************5444.....4688*************************9866 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   4.6e-18   1.4e-15      68     232 ..     263     429 ..     255     451 .. 0.74

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 4.6e-18
    TIGR03594  68 eireqaelaieeadvilfvvdareglteeDeeiaklLrksk..kpvilvvNKvdnkkeeaeaaefyslGlgev...laiSaehgrgikdLldeileelpeeeeeeeeeeeeepikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevk....gkkylliDTAG 232
                  +i  +  + ++ +dvil ++dar+   ++ + i +++r ++  k++++v+NK+d   +  ++  + +l  +++   +  S +h  g ++L++ + +++ + +e    +  +++i +++iG pNvGKS+ +N+l+ ++ + v +i+G T+   +i++  +    +   +++DTAG
  MMETSP1061-20121228|12833_1 263 RIWGEFFKVVDCSDVILHIIDARNVPGTRCTMIERHIRDNAshKHLVFVLNKIDLVPNWVAKRWMGELAKDRPtiaFHASLTHAFGKGALISLL-RQFGKLHE----D--KKQISVGVIGYPNVGKSSVINTLISKKSCKVAPIPGETKIWQYITLFKRisliDCPGVVVDTAG 429
                  566666778999*************************9877669**********9987777666777766665211566778888888877644.44444333....2..23599*********************************85444433222111133445566665 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.53   1.7e+02      92     145 ..     266     321 ..     257     342 .. 0.70
   2 !   40.3   0.0   1.8e-13   5.8e-11      15      74 ..     365     423 ..     353     442 .. 0.88
   3 ?   -3.6   0.0       5.3   1.7e+03     137     159 ..     455     477 ..     443     489 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.53
    TIGR03598  92 eeYLekrenLkgvvllvDirhelkelDlellellkea..kipvlvvltKaDklkks 145
                   e+++  ++   ++ ++D+r  + +  +++ + ++++  + +++ vl+K+D + + 
  MMETSP1061-20121228|12833_1 266 GEFFKVVDCSDVILHIIDARNVPGTRCTMIERHIRDNasHKHLVFVLNKIDLVPNW 321
                  56666666777788999999987777777777776652234566789999987765 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 1.8e-13
    TIGR03598  15 edklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTqlinffevneelrlvDlPGY 74 
                  ++k++ + ++G+ NvGKSs+iN+L+++k   +++  PG T+   + ++ +++ l+D PG 
  MMETSP1061-20121228|12833_1 365 DKKQISVGVIGYPNVGKSSVINTLISKK-SCKVAPIPGETKIWQYITLFKRISLIDCPGV 423
                  45678999*****************988.89****************************5 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 5.3
    TIGR03598 137 tKaDklkkselkkalkkvkkelk 159
                    +Dk+k+++++ + k +k+e k
  MMETSP1061-20121228|12833_1 455 AIVDKVKREHIAGQYKFTKEESK 477
                  55789998888888887777655 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   0.00013     0.042     284     333 ..     270     322 ..     267     339 .. 0.77
   2 !   24.8   0.0   7.1e-09   2.2e-06     201     300 ..     360     461 ..     343     488 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00013
    TIGR00450 284 kaikeadlvlyvlDaskpltkddeli...itlkkkkkdlllvlNKiDLaelei 333
                  k ++ +d++l ++Da++      ++i   i+ + ++k+l++vlNKiDL+ + +
  MMETSP1061-20121228|12833_1 270 KVVDCSDVILHIIDARNVPGTRCTMIerhIRDNASHKHLVFVLNKIDLVPNWV 322
                  6778899********986655555652225678899************95544 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 7.1e-09
    TIGR00450 201 kkleklkdglklaivGktNvGKSSLlNallkkdraiVsdikGttR..DvvE..edleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDask 300
                   kl++ k+ + + ++G +NvGKSS++N l++k    V+ i+G t+   ++   + + l   +  ++DtAG  e+++ +   G+ ++ ++ +  d++  ++D  k
  MMETSP1061-20121228|12833_1 360 GKLHEDKKQISVGVIGYPNVGKSSVINTLISKKSCKVAPIPGETKiwQYITlfKRISLIDCPGVVVDTAGDTETESVLK--GVVRAERLENPEDFIQAIVDKVK 461
                  46777788999*********************************84444432277888888888999999888888774..77777766666666666666554 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00033       0.1      79     125 ..     270     318 ..     263     339 .. 0.84
   2 !   19.1   0.1   6.1e-07   0.00019       2      68 ..     367     435 ..     366     446 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00033
    TIGR00231  79 rslevvdivilvldveeglekqtkeiiheak..kkgvpiilvvnKiDlk 125
                  +++++ d++++++d+++++      i+++ +  ++ + +++v+nKiDl+
  MMETSP1061-20121228|12833_1 270 KVVDCSDVILHIIDARNVPGTRCTMIERHIRdnASHKHLVFVLNKIDLV 318
                  678999*************98888999987712345689********97 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 6.1e-07
    TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtr..dyvteqieedGktykvnllDTaGqedfda 68 
                  k+i ++++G ++vGKs+ +n l+ +k  +++  pg t+  +y+t   ++  + +   ++DTaG  + + 
  MMETSP1061-20121228|12833_1 367 KQISVGVIGYPNVGKSSVINTLISKKSCKVAPIPGETKiwQYITLFKRISLIDCPGVVVDTAGDTETES 435
                  7899**********************7777777754432255555444444555556666666555444 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   0.00017     0.053     228     316 ..     267     348 ..     258     361 .. 0.82
   2 !   17.1   0.0   1.5e-06   0.00048     159     217 ..     370     425 ..     365     476 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00017
    TIGR02729 228 eFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkidlleeeeleellkelkeelekkvlaisaltkeg 316
                  eF k ++ + v+lh+id+++     p +++++ie+ ++      ++k+ + vlnkidl+ +  +++ + el+++  +  ++ s ++  g
  MMETSP1061-20121228|12833_1 267 EFFKVVDCSDVILHIIDARNV----PGTRCTMIERHIRDNA---SHKHLVFVLNKIDLVPNWVAKRWMGELAKDRPTIAFHASLTHAFG 348
                  79999**************99....8899999999988655...599*************99999999999998877667766666555 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 1.5e-06
    TIGR02729 159 dvglvGlpnaGkStllsa.vsaakpkiadYpFtTlvPnLGvveveeeksfvlaDiPglie 217
                   vg++G+pn+GkS+++++ +s+   k+a  p  T   +   +++   k++ l D Pg++ 
  MMETSP1061-20121228|12833_1 370 SVGVIGYPNVGKSSVINTlISKKSCKVAPIPGETKIWQY--ITL--FKRISLIDCPGVVV 425
                  59**************973688999***98887766543..222..23566666666665 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.17        54      81     120 ..     276     318 ..     263     359 .. 0.78
   2 !   23.9   0.1   1.6e-08     5e-06       2      59 ..     370     424 ..     369     491 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.17
    TIGR00436  81 dlilfvvdsdeknke.dellleklqklkap..vvlalnkldnk 120
                  d+il ++d+ +  ++   ++  ++++   +   v +lnk+d  
  MMETSP1061-20121228|12833_1 276 DVILHIIDARNVPGTrCTMIERHIRDNASHkhLVFVLNKIDLV 318
                  9************997889999999765540145567888876 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 1.6e-08
    TIGR00436   2 fvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlh 59 
                   v+++G pnvGKS ++N+l+ +k+  v p++  T+     + ++  ++i +iD PG+ 
  MMETSP1061-20121228|12833_1 370 SVGVIGYPNVGKSSVINTLISKKSCKVAPIPGETKI---WQYITLFKRISLIDCPGVV 424
                  69*****************************99975...3677888999******986 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.097        31      82     135 ..     270     325 ..     263     349 .. 0.70
   2 !   22.3   0.0   3.4e-08   1.1e-05       6      71 ..     367     435 ..     363     491 .. 0.73

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.097
    TIGR03918  82 evlektdlallvvdaeaeleeleeelleelkek..kipvivvlnkidlkeeekeke 135
                  +v++  d++l ++da++ + +  + + ++++++  +  ++ vlnkidl+ +  +k+
  MMETSP1061-20121228|12833_1 270 KVVDCSDVILHIIDARNVPGTRCTMIERHIRDNasHKHLVFVLNKIDLVPNWVAKR 325
                  57788899999999997666655555555554311457999******998765444 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 3.4e-08
    TIGR03918   6 erlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtD....pvekamEllplGpvvliDTaGldDege 71 
                  +++ ++++G  N+GKSs+iN+l+ ++   v+ +pG T      +  k + l +  p v++DTaG  ++ +
  MMETSP1061-20121228|12833_1 367 KQISVGVIGYPNVGKSSVINTLISKKSCKVAPIPGETKIwqyiTLFKRISLIDC-PGVVVDTAGDTETES 435
                  67889*******************************974222256788888886.667789999444333 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0022      0.68     267     318 ..     273     322 ..     269     358 .. 0.75
   2 !   13.9   0.0   1.3e-05    0.0041     185     214 ..     364     393 ..     351     398 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0022
    TIGR03156 267 aeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeee 318
                    +d++lh++Da +    ++ + +e+ +++ +a++++ + vlNkid++++  
  MMETSP1061-20121228|12833_1 273 DCSDVILHIIDARNVP-GTRCTMIERHIRD-NASHKHLVFVLNKIDLVPNWV 322
                  568********87655.5567777887877.678899**********98443 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.3e-05
    TIGR03156 185 kksevptvalvGYTNaGKstllnaltkaev 214
                  ++++ ++v+++GY N GKs+++n+l++++ 
  MMETSP1061-20121228|12833_1 364 EDKKQISVGVIGYPNVGKSSVINTLISKKS 393
                  5677889******************98865 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.4e-06   0.00044      67     183 ..     303     430 ..     229     436 .. 0.67

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.4e-06
    TIGR00157  67 akniepiivlnkkdlleeedae...keqleelknlgYkvllvsvkneegleelkekl......kkrisv.faGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhl.qgGliiDtPGf 183
                  a++ + + vlnk+dl+ +  a+    e +++   + ++  l+ +  +  l +l  ++      kk+isv ++G   VGKSS+iN+l ++ + kv  + +++k  +  T   ++  +   G+++Dt G 
  MMETSP1061-20121228|12833_1 303 ASHKHLVFVLNKIDLVPNWVAKrwmGELAKDRPTIAFHASLTHAFGKGALISLLRQFgklhedKKQISVgVIGYPNVGKSSVINTLISKKSCKVAPIPGETKIWQYITLFKRISLIdCPGVVVDTAGD 430
                  5555556666666666655555222233333334455444444433333333333222222223455554678888******************************99988887776789****9985 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.7e-06   0.00084       1      56 [.     375     428 ..     375     463 .. 0.70
   2 ?   -1.9   1.0      0.69   2.2e+02     167     227 ..     530     592 ..     522     600 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.7e-06
    TIGR00437   1 GnpNvGKstlfnaL.tgsnqkvgNwpGvTVekkegklelkgedieivDlPGiYsLtt 56 
                  G pNvGKs+++n L +++  kv+  pG T   k  +  +  ++i ++D PG+   t+
  MMETSP1061-20121228|12833_1 375 GYPNVGKSSVINTLiSKKSCKVAPIPGET---KIWQYITLFKRISLIDCPGVVVDTA 428
                  78**********97478899*******88...44455555699********864333 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.69
    TIGR00437 167 eilkeaeslaevkeklkelkqkl.kkglevleglleeraleiekiek.elaevvkkeseskls 227
                   +++e +s ++v+e++++ +q+l   g+e ++++  e+  ei++ ek e a+  + e+ +k++
  MMETSP1061-20121228|12833_1 530 DDVEENKSGNAVVESIEPETQNLdDVGEENMKTDQTEEEEEIDEDEKtESAKNKQVEEGEKDE 592
                  566777777888888888888887777777777666666666655441344444445555555 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.3e-05    0.0042      23      96 ..     354     423 ..     342     438 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.3e-05
    TIGR00991  23 kllellgklkeedvssltilvmgkggvgksstvnsiigervaavsafqseglrpvlvsrtragftlniidtpgl 96 
                   ll  +gkl+ ed + +++ v+g   vgkss +n++i ++ + v+++  e      +        + +id pg+
  MMETSP1061-20121228|12833_1 354 SLLRQFGKLH-EDKKQISVGVIGYPNVGKSSVINTLISKKSCKVAPIPGETKI---WQYITLFKRISLIDCPGV 423
                  5666778875.78999****************************999887643...333333334555666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 2210.82
//
Query:       MMETSP1061-20121228|12839_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 365.97
//
Query:       MMETSP1061-20121228|12875_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-144  479.6   1.2   2.4e-144  479.3   0.8    1.0  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    9.9e-30  101.6   2.1    1.7e-17   61.1   0.0    3.1  3  TIGR00475 selB: selenocysteine-specific translation elongation factor
    1.6e-24   84.2   2.8    8.4e-19   65.4   0.1    2.1  2  TIGR00485 EF-Tu: translation elongation factor Tu
    5.7e-15   52.5   4.4    6.5e-14   49.0   3.0    2.4  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
    3.2e-09   34.1   3.4    3.5e-08   30.7   0.1    2.9  3  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    8.2e-09   33.3   0.0    1.7e-08   32.3   0.0    1.5  1  TIGR00231 small_GTP: small GTP-binding protein domain
    2.2e-08   31.1   0.9    5.3e-07   26.6   0.1    2.2  2  TIGR00487 IF-2: translation initiation factor IF-2
    1.5e-07   28.0   1.7    2.9e-06   23.7   0.2    2.1  2  TIGR01393 lepA: GTP-binding protein LepA
    1.8e-06   24.5   0.3    9.9e-05   18.7   0.0    2.2  2  TIGR00491 aIF-2: translation initiation factor aIF-2
      8e-05   19.6   0.2      0.006   13.5   0.0    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00038   16.6   4.9      0.026   10.6   0.1    3.5  3  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
  ------ inclusion threshold ------
      0.015   12.8   0.1       0.16    9.5   0.0    2.5  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
      0.018   11.4   0.0       0.03   10.7   0.0    1.2  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family


Domain annotation for each model (and alignments):
>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  479.3   0.8  7.6e-147  2.4e-144       2     407 .]      34     457 ..      33     457 .. 0.91

  Alignments for each domain:
  == domain 1    score: 479.3 bits;  conditional E-value: 7.6e-147
    TIGR03680   2 kqpevniglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceep.eaytteekcee.......cgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvskekalenyeeikefvkgtvaenapiiPvsalkkvnidvllealekeiptperdldkdalllvarsfdvnkPGteieklkGGviGGslvqGklkvgdeieirPGikvek...egkte..yepiltevtsleagkkkveeakPgGlvavgtkLDPaltkaDalaGqvvgkpgklppvreklelevkllervvGte.....eeekvepikkkevllltvgtattvgvvtsakkdeievkLkkpvvaeegdrvaisrrvksrWrligyGvik 407
                  +q+++nig++Ghv hGk+t+vka++Gv t ++++el r i+iklGya+a+i+k + + e+   yt + + +e        g + +l+r+vsfvD+PGh++Lmatml Gaa+md+a L +a ne++Pqpqt ehl+a+ei+  k+i+i qnk+dlv+ + al + e+i++fv gtva+ apiiP+sa  k nidv+ e++ ++ip p rd ++d++l+v+rsfdvn+PG ++e+l+GGv GGs+++G+lkvgdeie+rPGi  ++   +g+t+   +pi+++++sl + +++++ a PgGl++vgt++DP+lt+aD+l+Gqv+g  gklp+v  ++e+++ ll r +G++     +++kv+++ ++e l++++g++ t g v ++k +  +++L +pv+++eg+++a+srrv++ Wrlig+G i+
  MMETSP1061-20121228|12875_1  34 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKGDPKGEKgGFYTSRGSNHEdefvdsvTGVNFRLRRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNETCPQPQTSEHLAAVEIMRLKEILILQNKVDLVKPDAALAQQEQIRKFVAGTVADSAPIIPISAVLKYNIDVVCEYIVRKIPLPIRDFTSDPQLIVIRSFDVNRPGQDVEDLQGGVAGGSILKGVLKVGDEIEVRPGIVKKQdgeDGQTTmvCSPIYSKISSLATENNELQYAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGKLPDVFCEIEISYYLLRRLLGVKtsdggKQAKVQKLSRGEILMVNIGSTATGGRVIAVKGELSKIALTQPVCTTEGEKIALSRRVDKHWRLIGWGQIR 457
                  699**************************************************8655555055555443322111111134455699****************************************************************************************************************************************************************************988773333444412579**********************************************************************9833333478****************************************************************985 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.1   3.2e-12     1e-09       1      45 [.      38      82 ..      38      88 .. 0.95
   2 !   61.1   0.0   5.5e-20   1.7e-17      50     213 ..     121     291 ..     115     297 .. 0.87
   3 ?    3.0   0.0     0.023       7.2     276     323 ..     394     441 ..     387     452 .. 0.88

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 3.2e-12
    TIGR00475  1 viiataGHvDHGKttLlkaltgidadrlPeEkKRGltiDlGyayl 45
                 ++i+t GHv HGK t++ka+ g+++ r  +E  R +ti lGya  
  MMETSP1061-20121228|12875_1 38 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANA 82
                 68****************************************975 PP

  == domain 2    score: 61.1 bits;  conditional E-value: 5.5e-20
    TIGR00475  50 kvlgliDvPGHekflknalagvggidaalLvvdadeG.vkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGieeLkkelknLlesldakdkqkplrlaiDraFkvK..G......aGtvvtGtafsGevkvgDelvlep 213
                  + + ++D PGH+ ++ ++l g + +daa+L+v+ +e  +++qt EHLa ++ + +ke+++  +K+D v  + +    e+++++   +     a i+ +sA+    i+ + +++ +   +  ++d  +  +l + r F v   G       G v  G++++G  kvgDe+ + p
  MMETSP1061-20121228|12875_1 121 RHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNETcPQPQTSEHLAAVEIMRLKEILILQNKVDLVKPDAALAQQEQIRKFVAGTVAD-SAPIIPISAVLKYNIDVVCEYIVRKIPL-PIRDFTSDPQLIVIRSFDVNrpGqdvedlQGGVAGGSILKGVLKVGDEIEVRP 291
                  6789******************************996379****************************99989999999****9999888.9********************9876654.45578999999999****98333333333477999**************9987 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.023
    TIGR00475 276 klkelqklhifhgaketvgkvslledklallvldeplilakgdklvlr 323
                  kl  +++l +  g   t g+v  ++++l ++ l +p+   +g+k+ l 
  MMETSP1061-20121228|12875_1 394 KLSRGEILMVNIGSTATGGRVIAVKGELSKIALTQPVCTTEGEKIALS 441
                  688899999999********************************9875 PP

>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   2.3e-07   7.1e-05      10      42 ..      35      67 ..      30      80 .. 0.84
   2 !   65.4   0.1   2.6e-21   8.4e-19      74     246 ..     120     290 ..     106     442 .. 0.90

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.3e-07
    TIGR00485 10 kphvnvgtighvdhgkttltaaittvlakegka 42
                 ++ +n+gtighv hgk+t+  ai+ v + + k 
  MMETSP1061-20121228|12875_1 35 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKN 67
                 5679*******************9887766555 PP

  == domain 2    score: 65.4 bits;  conditional E-value: 2.6e-21
    TIGR00485  74 krhyahvdcpghadyvknmitgaaqmdgailvvsaad.gpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseydfpgddvpivrgsalkalegdaeweekilelmeavdeyiptperevdkpfll..aiedvfsitgrgtvvtgrvergevkvgeeveiv 246
                  +rh + vdcpgh   +  m+ gaa md a l+v++ +  p pqt eh+     + + +++++ nkvdlv+ +  l   ++++r++++      d  pi+  sa+   + d   e  ++++   + ++  +p+  v ++f +  + +dv  ++  g v+ g + +g++kvg+e+e+ 
  MMETSP1061-20121228|12875_1 120 RRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEtCPQPQTSEHLAAVEIMRLKEILILQNKVDLVKPDAALAQ-QEQIRKFVAG--TVADSAPIIPISAVLKYNIDVVCEYIVRKIPLPIRDFTSDPQLIVIRSFDVnrPGQDVEDLQ--GGVAGGSILKGVLKVGDEIEVR 290
                  69*****************************9999872689****************************98876654.5579998875..56788*******************************************98733567777765..68*****************984 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   3.0   2.1e-16   6.5e-14       5     267 ..      35     294 ..      32     336 .. 0.78

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 2.1e-16
    TIGR00483   5 kehlnvafighvdsgkstlvgrl.....lyeagaiderlleklkkeaeekgka...sfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvvkksenapwykgktllealdkleapekpvdkplri..piqdvysitgvgtvpvgrvetgvlkkgekvvfepagv 267
                  +  +n+  ighv +gkst+v  +     +    ++++++  kl    ++  k+   + +  +   + + + e      v+   f+  + +v+ vd+pgh  ++  m+ ga+  daa l+va++++    qpqt eh+     + +k++++  nk+d v+ d    +  ++++ +++   g  +d+ ++ip+sa    n+   +e       k  l   d   +p+  v + + +  p qdv ++ g   v  g +  gvlk+g+++   p  v
  MMETSP1061-20121228|12875_1  35 QATINIGTIGHVAHGKSTVVKAIsgvqtVRFKNELERNITIKLGYANAKIYKGdpkGEKGGFYTSRGS-NHEDEFVDSVTGVNFRLRR-HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNET--CPQPQTSEHLAAVEIMRLKEILILQNKVDLVKPDAALAQ--QEQIRKFV--AGTVADSAPIIPISAVLKYNIDVVCEY---IVRKIPLPIRDFTSDPQLIVIRSFDVnrPGQDVEDLQG--GVAGGSILKGVLKVGDEIEVRPGIV 294
                  5689**************99765211112333456666666776555544443111233445555544.4455556678889998866.79*******************************988..89******************************9986543..56677775..5888999********999998766553...34556677777788888887666544338999999975..7889999999999999998888655 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       3.3   1.1e+03       5      17 ..      42      54 ..      40      58 .. 0.87
   2 !   30.7   0.1   1.1e-10   3.5e-08      79     185 ..     120     225 ..     115     234 .. 0.88
   3 ?    3.2   0.1     0.025       7.8     225     255 ..     257     292 ..     242     353 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 3.3
    TIGR02034  5 tcGsvddGkstli 17
                 t G v  Gkst++
  MMETSP1061-20121228|12875_1 42 TIGHVAHGKSTVV 54
                 8899*******97 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 1.1e-10
    TIGR02034  79 krkfivadtPGheqytrnmatgastadlavllvdarkGv.leqtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdylalaeklgvsdvtviPlsalkGdnv 185
                  +r+    d+PGh+     m  ga+ +d a llv   +   + qt  h   + ++ +k++++  nk+dlv+ d++  +  +++ +++ +     +  +iP+sa+   n+
  MMETSP1061-20121228|12875_1 120 RRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNETCpQPQTSEHLAAVEIMRLKEILILQNKVDLVKPDAALAQ--QEQIRKFVAGTVADSAPIIPISAVLKYNI 225
                  5677788**************************988776367****************************9998765..477788888888889999****9877766 PP

  == domain 3    score: 3.2 bits;  conditional E-value: 0.025
    TIGR02034 225 vnrpnldfrGyaGtiasGsv.....kvGdevvvlps 255
                  vnrp +d   ++G +a+Gs+     kvGde+ v p 
  MMETSP1061-20121228|12875_1 257 VNRPGQDVEDLQGGVAGGSIlkgvlKVGDEIEVRPG 292
                  889998888777776666542222288888888774 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3   0.0   5.4e-11   1.7e-08       2     162 ..      36     232 ..      35     234 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 5.4e-11
    TIGR00231   2 keikivivGhvdvGKstLlnsllknk..isiteskp..gvtrdyvteqieedGkt...............................ykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheak..kkg.vpiilvvnKiDlkd.....dlktkvkslfaklna..epiielsaetgknidklfklv 162
                  ++i+i+ +Ghv++GKst  + +++ +  +++ e +   ++   y+ ++i ++G +                                 v ++D +G++         +++    + v+d ++l+++ +e+  +q ++ +h a    +  + i++  nK+Dl++     + +++ ++++a + a  +pii++sa    nid + +++
  MMETSP1061-20121228|12875_1  36 ATINIGTIGHVAHGKSTVVKAISGVQtvRFKNELERniTIKLGYANAKI-YKGDPkgekggfytsrgsnhedefvdsvtgvnfrlrRHVSFVDCPGHDIL-------MATMLNGAAVMDAAFLLVAGNETC-PQPQTSEHLAAveIMRlKEILILQNKVDLVKpdaalAQQEQIRKFVAGTVAdsAPIIPISAVLKYNIDVVCEYI 232
                  589********************98822455555556677777777755.455446788***************************9*************.......9*************9977777665.555555554441144415688889********99775555555555554431145***********99888876 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.024       7.4      90     110 ..      40      60 ..      11      84 .. 0.78
   2 !   26.6   0.1   1.7e-09   5.3e-07     134     294 ..     120     287 ..     113     318 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.024
    TIGR00487  90 vtimGhvDhGktsLLdsirkt 110
                  +  +Ghv hGk +++  i  +
  MMETSP1061-20121228|12875_1  40 IGTIGHVAHGKSTVVKAISGV 60 
                  4457*********99988654 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 1.7e-09
    TIGR00487 134 kkkitflDtPGheaftsmrarGakvtDivvlvvaadDGv.kpqtieaiehakaanv.PiivainkiDkpeanpDrvkqelseyglvpeewGGetifvpvsalkgkgideLldaiLlqs..eveelkanknkqa.kgvvie...akldkgrGpvatvlvqeGtLkvGDiv 294
                  +++++f+D PGh+ + +    Ga v D + l va ++   +pqt e +          i++  nk+D  + +    +qe +   +v+      + ++p+sa    +id + + i+ +    + ++++ ++    ++  ++     ++  +G va   + +G LkvGD +
  MMETSP1061-20121228|12875_1 120 RRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNETCpQPQTSEHLAAVEIMRLkEILILQNKVDLVKPDAALAQQE-QIRKFVAGTVADSAPIIPISAVLKYNIDVVCEYIVRKIplPIRDFTSDPQLIViRSFDVNrpgQDVEDLQGGVAGGSILKGVLKVGDEI 287
                  5689**********9999999*************99876489****99988877762577888****866555444443.34467899999999***************999997543114555555555332122222211145667777777777777777777776 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.012       3.7       5      23 ..      39      57 ..      35      78 .. 0.75
   2 !   23.7   0.2   9.3e-09   2.9e-06      72     222 ..     123     287 ..     114     308 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.012
    TIGR01393  5 nfsiiahidhGkstladrl 23
                 n+  i h+ hGkst++  +
  MMETSP1061-20121228|12875_1 39 NIGTIGHVAHGKSTVVKAI 57
                 8999**********98654 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 9.3e-09
    TIGR01393  72 lnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylale.kdl.eiiPvinkidlPsadverv.kkeieevi.G..ldaeeailvsaktGigieelleaivkkvpaPkgdkeaplkalifdsv........ydayrGvvvyvrvveGkikkgdki 222
                  + ++d PGh  +   +    a  + a+llv           ++   a+e + l ei+ + nk+dl + d     +++i++++ G   d++ +i +sa    +i+ + e iv+k+p P  d +++ + +++ s+         +  +G v+   +++G +k+gd+i
  MMETSP1061-20121228|12875_1 123 VSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNETCPQPQTSEHLAAVEiMRLkEILILQNKVDLVKPDAALAqQEQIRKFVaGtvADSAPIIPISAVLKYNIDVVCEYIVRKIPLPIRDFTSDPQLIVIRSFdvnrpgqdVEDLQGGVAGGSILKGVLKVGDEI 287
                  679******99999999999999******9998887655556666777634452677778*****76655543145677766243247778999**************************999999888776522222222345566666666666666666666 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.012       3.9       9      30 ..      42      63 ..      35      83 .. 0.79
   2 !   18.7   0.0   3.1e-07   9.9e-05      73     135 ..     125     189 ..     117     205 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.012
    TIGR00491  9 vlGhvdhGkttlldkirktrva 30
                  +Ghv hGk+t++  i + + +
  MMETSP1061-20121228|12875_1 42 TIGHVAHGKSTVVKAISGVQTV 63
                 68************99987765 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 3.1e-07
    TIGR00491  73 vidtPGheaftslrkrGGaladiailvvdineGf.kpqtveavnilrqlkt.Pfvvaankidrip 135
                  ++d PGh+++ +    G a+ d a l+v  ne   +pqt e +  +  ++    ++  nk+d+++
  MMETSP1061-20121228|12875_1 125 FVDCPGHDILMATMLNGAAVMDAAFLLVAGNETCpQPQTSEHLAAVEIMRLkEILILQNKVDLVK 189
                  89******************************8659****966655555541356789****986 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.013       4.1     172     199 ..      34      61 ..       7      68 .. 0.81
   2 !   13.5   0.0   1.9e-05     0.006     273     342 ..     162     232 ..     137     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.013
    TIGR03594 172 eeepikiaiiGrpNvGKStLvNallgee 199
                  ++++i+i+ iG    GKSt v a+ g +
  MMETSP1061-20121228|12875_1  34 RQATINIGTIGHVAHGKSTVVKAISGVQ 61 
                  35679****************9998865 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.9e-05
    TIGR03594 273 eqDlkiaglileegkalvivvNKwDlvkdekeleelkkeleekl..kflkfapivfiSAltgkgveklleai 342
                  +  +++a + + + k ++i+ NK+Dlv + +   + ++++++ +  + ++ api+ iSA  + +++ ++e i
  MMETSP1061-20121228|12875_1 162 QTSEHLAAVEIMRLKEILILQNKVDLV-KPDAALAQQEQIRKFVagTVADSAPIIPISAVLKYNIDVVCEYI 232
                  566788888899999************.55555555666776541146699***************999877 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.0    0.0031      0.96       3      21 ..      39      57 ..      37      87 .. 0.83
   2 !   10.6   0.1   8.1e-05     0.026      58     140 ..     114     199 ..     107     336 .. 0.83
   3 ?   -0.9   0.1      0.24        75     240     291 ..     385     437 ..     377     446 .. 0.80

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0031
    TIGR01394  3 niaiiahvDhGkttlvDkl 21
                 ni  i hv hGk t+v ++
  MMETSP1061-20121228|12875_1 39 NIGTIGHVAHGKSTVVKAI 57
                 9999************876 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 8.1e-05
    TIGR01394  58 avkykd.tkinivDtPGhaDfGGevervlsmvdgvlllvDase.Gplpqtrfvlkkalelglkpivvi.nkiDrpdarpeevvdev 140
                   v+++   ++  vD PGh      +     ++d++ llv  +e  p pqt   l     ++lk i+++ nk+D  + + +  ++e 
  MMETSP1061-20121228|12875_1 114 GVNFRLrRHVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEtCPQPQTSEHLAAVEIMRLKEILILqNKVDLVKPDAALAQQEQ 199
                  555553367999**************************998883699****9999888899999987669***7776666655554 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.24
    TIGR01394 240 gkiekariskllafeglerveideaeaGdivavaG.ledieigetiadaeeae 291
                  +  ++a+++kl   e l       a+ G ++av G l++i +++ ++++e ++
  MMETSP1061-20121228|12875_1 385 DGGKQAKVQKLSRGEILMVNIGSTATGGRVIAVKGeLSKIALTQPVCTTEGEK 437
                  5567899999999998888888889999*****99889999999999887554 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.53   1.7e+02      13      40 ..      32      59 ..      24      66 .. 0.80
   2 ?    9.5   0.0    0.0005      0.16     123     184 ..     169     231 ..     115     233 .. 0.77

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.53
    TIGR03598 13 lpedklpeiafaGrSNvGKSsliNaLtn 40
                 + ++ +++i  +G    GKS+++ a+ +
  MMETSP1061-20121228|12875_1 32 ISRQATINIGTIGHVAHGKSTVVKAISG 59
                 56677889999***********999876 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.0005
    TIGR03598 123 ellkeakipvlvvltKaDklkkselkkalkkvkkelkke.eekvevllfSslkkegieelkae 184
                  ++   +  ++l++ +K+D +k  ++ +++++++k ++ + ++++ ++ +S++ k +i+ + + 
  MMETSP1061-20121228|12875_1 169 AVEIMRLKEILILQNKVDLVKPDAALAQQEQIRKFVAGTvADSAPIIPISAVLKYNIDVVCEY 231
                  3333445578999**********************999989999************9988766 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.4e-05      0.03      27      74 ..      33      81 ..      14      92 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.4e-05
    TIGR03719 27 sffpgakiGvlGlnGaGkstllkimaGvdk.efeGealaaegikvGyle 74
                 s      iG +G    Gkst++k ++Gv++  f+ e   + +ik+Gy +
  MMETSP1061-20121228|12875_1 33 SRQATINIGTIGHVAHGKSTVVKAISGVQTvRFKNELERNITIKLGYAN 81
                 5556778*********************974799999999999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.42
# Mc/sec: 1467.59
//
Query:       MMETSP1061-20121228|12890_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-244  809.9  14.5     2e-244  809.7  10.1    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
   2.9e-147  489.4  15.1   3.8e-147  489.0  10.5    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   2.4e-124  413.7  12.2     3e-124  413.4   8.4    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
   3.1e-106  353.7  11.2   4.1e-106  353.4   7.8    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
   8.1e-106  352.7  15.6   9.8e-106  352.4  10.8    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
   6.9e-105  349.1  10.6   8.2e-105  348.9   7.4    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   2.3e-102  340.9  10.5   2.8e-102  340.7   7.3    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
      1e-87  292.8  14.5    1.2e-87  292.5  10.0    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    4.5e-76  254.3  11.5    4.5e-76  254.3   8.0    1.4  2  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    2.1e-25   87.0   7.7    2.6e-16   57.0   1.9    2.2  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  809.7  10.1  4.9e-247    2e-244       2     515 ..      21     537 ..      20     539 .. 0.99

  Alignments for each domain:
  == domain 1    score: 809.7 bits;  conditional E-value: 4.9e-247
    TIGR02342   2 kekekpedvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdlsdrealiksattslsskvvsqyssllaplavdavlkvid.sekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevks..ddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivl 515
                  +e+ k +dvrtsnivaaka+a+a+rtslGp+Gmdkl+q ++Ge++i+ndGatilk+++v+hpaak+lv+ls++qdieaGdGtt+vvvlaGall+a+++ll+kgihp+ i+ sf +aad+a++ l+++s+pvdl+dr++l+++++t+lsskvv+q+s+llap+avd+vl ++d  e+++nvdl+di++v +lGgt+ddtel++G+vl++ a+k+agg+t +++aki+liq++lsapktdm+n+vvvsdy++mdr+l+eerk+il  +k+ikk+ganvlliqksilrda n+l+lhflak++ilvv di r+++efi++tlGc+pva+ d+++adklG+ae v +v +  +++k+vk tGv+n+gkt++vl+rGsn++v++eaerslhda cv+r++vkkr++iaGGGa e e +l+l k+++el G+++y+++afadale+ipytlaenaG+ pi+vvtelr++ha+G k aGi+v+kg+++d++e +v+qpllv++sa++la+e+v +i+kidd+v+
  MMETSP1061-20121228|12890_1  21 QERSKGKDVRTSNIVAAKAIANAVRTSLGPRGMDKLMQLENGEILISNDGATILKNMKVIHPAAKMLVDLSQSQDIEAGDGTTTVVVLAGALLNASSSLLAKGIHPMAIASSFLRAADKAVEFLEDISKPVDLADRDSLLNAVETCLSSKVVAQNSDLLAPMAVDSVLGIVDdVETSTNVDLNDIRLVTQLGGTVDDTELVKGLVLNKGANKTAGGATNMKNAKIALIQYCLSAPKTDMDNNVVVSDYSAMDRILREERKFILGQCKAIKKSGANVLLIQKSILRDAYNELSLHFLAKMGILVVTDIARNDIEFICRTLGCQPVAHPDQMKADKLGFAENVSDVLMegGSTKVVKFTGVQNPGKTMTVLLRGSNQFVLGEAERSLHDAQCVVRAFVKKRCMIAGGGAAETEASLRLHKYSQELAGMDAYCFQAFADALELIPYTLAENAGMRPIDVVTELRKQHAEGVKGAGINVKKGKVSDMYEMNVVQPLLVSTSAIQLATECVSMIMKIDDLVV 537
                  8999********************************************************************************************************************************************************************987626899***********************************************************************************************************************************************************************88556789******************************************************************************************************************************************************************997 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.0  10.5  9.2e-150  3.8e-147       9     519 ..      21     537 ..      18     539 .. 0.96

  Alignments for each domain:
  == domain 1    score: 489.0 bits;  conditional E-value: 9.2e-150
    TIGR02339   9 tqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidvedkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvh.egmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgi.....DdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkv..gedklvfvegakna.kavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                  ++r+kg+d+++sni aaka+a+av+++lGPrG+Dk++    G++ i nDGatilk+m + hPaak+lv+ +++qd e+gDGttt+vvlaG+Ll+ +  Ll ++ihP  i++ + +aa+ka+e +++i++ +d+ d++ l + +et l+sk+va ++ d+la ++v++v  +v+   + +++vdl++i+++++ Gg+++dtelv+G+v++k + +  g  ++++nakial++  l   kt++d ++ +++ + + + l +e + +    ++i+++Ganv++ qk+i     ++l  h+lak Gil v  + ++Die + r  G + v++ +++++++LG ae v+   +  g  k+v  +g++n+ k++t+llrG+++ v+ e+eR+l+Da  vv++ +++  ++aGgGa e+e ++rl++y++++ G +   ++afadale ip +laenaG+ pid+++elR++h+ eg k ag++v++g+++dm+e +v++pl v + ai+ ate   +i++iDd++ 
  MMETSP1061-20121228|12890_1  21 QERSKGKDVRTSNIVAAKAIANAVRTSLGPRGMDKLMQLENGEILISNDGATILKNMKVIHPAAKMLVDLSQSQDIEAGDGTTTVVVLAGALLNASSSLLAKGIHPMAIASSFLRAADKAVEFLEDISKPVDLADRDSLLNAVETCLSSKVVA-QNSDLLAPMAVDSVLGIVDDV-ETSTNVDLNDIRLVTQLGGTVDDTELVKGLVLNKGANKtAGGATNMKNAKIALIQYCLSAPKTDMDNNVVVSDYSAMDRILREERKFILGQCKAIKKSGANVLLIQKSIlrdayNELSLHFLAKMGILVVTDIARNDIEFICRTLGCQPVAHPDQMKADKLGFAENVSDVLMegGSTKVVKFTGVQNPgKTMTVLLRGSNQFVLGEAERSLHDAQCVVRAFVKKRCMIAGGGAAETEASLRLHKYSQELAGMDAYCFQAFADALELIPYTLAENAGMRPIDVVTELRKQHA-EGVKGAGINVKKGKVSDMYEMNVVQPLLVSTSAIQLATECVSMIMKIDDLVV 537
                  689*****************************************************************************************************************************************************6.99****************997.889*******************************87661578899***************************************************************97755568899************************************************99766115667777788888669*****************************************************************************************************.59***********************************************985 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  413.4   8.4  7.3e-127    3e-124      20     529 ..      21     536 ..      13     539 .. 0.94

  Alignments for each domain:
  == domain 1    score: 413.4 bits;  conditional E-value: 7.3e-127
    TIGR02343  20 kkrlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavad.le.rkdvdfdlikvegkvGgsledtklikGilidkdlshpq.mkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGf.ddean....hlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqske.skavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvi 529
                  + r kG ++  sni+aaka+a+ +rtslGp+G+dk+++ ++g+i ++ndGatil++m++ ++ ak+lv+ls+sqd e GdGtt+vvvla+all+ ++ ll kGihp+ ia  f +aa+ ave le+i++ ++    ++++ll+a+ t+l+sk+v ++ + la +avd+vl ++d +e   +vd++ i++  + Gg+++dt+l+kG++++k   +      ++k+akia++   +  pk     ++++s     +++ + e++      + ikksGan+++ q     d  n    h+l + ++  v  ++ +++e+i  + g + v+  ++++++klG a+ v +  +     +++     ++  k++t+l+rG+n++++ ea+rslhda cvvr ++k++ ++ GGGaae   sl +++ +++l+g++ y ++afa+ale ip +laen+G+ pi++++e+++ q  e +   G++ ++    dm e++v+++l+     i+lat+ v mi+kidd++
  MMETSP1061-20121228|12890_1  21 QERSKGKDVRTSNIVAAKAIANAVRTSLGPRGMDKLMQLENGEILISNDGATILKNMKVIHPAAKMLVDLSQSQDIEAGDGTTTVVVLAGALLNASSSLLAKGIHPMAIASSFLRAADKAVEFLEDISKPVDL--ADRDSLLNAVETCLSSKVVAQNSDLLAPMAVDSVLGIVDdVEtSTNVDLNDIRLVTQLGGTVDDTELVKGLVLNKGANKTAgGATNMKNAKIALIQYCLSAPKTDMDNNVVVSDYSAMDRILREERKFILGQCKAIKKSGANVLLIQKSIlRDAYNelslHFLAKMGILVVTDIARNDIEFICRTLGCQPVAHPDQMKADKLGFAENVSDVLMEGGSTKVVKFTGVQNpGKTMTVLLRGSNQFVLGEAERSLHDAQCVVRAFVKKRCMIAGGGAAETEASLRLHKYSQELAGMDAYCFQAFADALELIPYTLAENAGMRPIDVVTELRK-QHAEGVKGAGINVKKGKVSDMYEMNVVQPLLVSTSAIQLATECVSMIMKIDDLV 536
                  6899*****************************************************************************************************************************9988..899********************************8776255246899999************************99876526789************************************************************98752444452222667789999*****************************************99988888888777665538*************************************************************************************************97.566788899******99***********************************87 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.4   7.8    1e-108  4.1e-106       9     521 ..      21     537 ..      18     540 .. 0.95

  Alignments for each domain:
  == domain 1    score: 353.4 bits;  conditional E-value: 1e-108
    TIGR02344   9 tkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthp.kmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGv.....sdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGd.eyftflteckdp.kactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddivs 521
                  ++r++G+ +++sni aaka+a+ +rt+lGp+ m k++    G i+++ndG +il++++v hpaak l++ls++qd e GdGtt+v++laG ll+a++++l k ihp  i +++ +a ++a+++le++s pvd+ d+++ll++v++++++k+v++ sdl++ +a+d+v  +  +  ++++ +vd+     v ++ GG+++d+ ++kG++lnk   ++     +++n +i l++  l   k++   nv +++   ++r+l+ e++++   c+ i ++ +++++ +k +      +l+ h+l+k +i ++  + + d + i r  G + v+ ++++k + +G    + +v + G       +t  ++p k+ t+llrG+ + vl e er l+da  v+r  + +  +++GGGa+e ++s +l+k +++l g++ + ++a adale+ip tl++n+G+ +i  +telr +ha++  k  Gi+ ++Gk+ dm e+++ +pl v + +i+ a e+ +++++idd+v 
  MMETSP1061-20121228|12890_1  21 QERSKGKDVRTSNIVAAKAIANAVRTSLGPRGMDKLMQLENGEILISNDGATILKNMKVIHPAAKMLVDLSQSQDIEAGDGTTTVVVLAGALLNASSSLLAKGIHPMAIASSFLRAADKAVEFLEDISKPVDLADRDSLLNAVETCLSSKVVAQNSDLLAPMAVDSVLGIVDDV-ETST-NVDLNDIRLVTQL-GGTVDDTELVKGLVLNKGANKTaGGATNMKNAKIALIQYCLSAPKTDMDNNVVVSDYSAMDRILREERKFILGQCKAIKKSGANVLLIQKSIlrdayNELSLHFLAKMGILVVTDIARNDIEFICRTLGCQPVAHPDQMKADKLGFAENVSDVLMEGGsTKVVKFTGVQNPgKTMTVLLRGSNQFVLGEAERSLHDAQCVVRAFVKKRCMIAGGGAAETEASLRLHKYSQELAGMDAYCFQAFADALELIPYTLAENAGMRPIDVVTELRKQHAEG-VKGAGINVKKGKVSDMYEMNVVQPLLVSTSAIQLATECVSMIMKIDDLVV 537
                  79***********************************************************************************************************************************************************************99998.4444.7999886666665.99***************99887356789***********************************************************9998754444689************************************************999998876515566789999997899***************************************************************************************************99.799********************************************985 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  352.4  10.8  2.4e-108  9.8e-106       6     529 ..      22     538 ..      16     541 .] 0.94

  Alignments for each domain:
  == domain 1    score: 352.4 bits;  conditional E-value: 2.4e-108
    TIGR02340   6 erksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyikeklavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqq.mpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGi.....ddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeri..addelilikgtkk.kksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddlikl 529
                  er++G+dvr+ n++a+ a+an+v+tslGP G+dk++  + G++ i ndGatilk+++v hPaak+lv+l+q qd e GdGtt+vv+la +ll+ +  l+++ +hP ++ s +  a+ +av++++  +++ v+   +++l+n+++t lssk+++++sdl++ ++vd+vl +   + + +t+  ++++ ++ + G+++ ++ lvkG +ln  + + +   +++k+akial+ + l   k ++  ++vv+d + +++i ++e + +  ++k i k+Ganv+l  k i     ++l+l  l   g++ v  + ++d+  i ++ G++ v+        + ++a +lG+ae+v+++ +  +  +++ + g ++  k+ +++lrG+n+++l e erslhda cvv+  +    ++aGgGa e+  s+ l ++++ l   +    ++fa+al  iP +la na+    ++v++lr  ha+         +k +G+++++gk+ d  e+ v++P +     ++ ate    i++iddl+ +
  MMETSP1061-20121228|12890_1  22 ERSKGKDVRTSNIVAAKAIANAVRTSLGPRGMDKLMQLENGEILISNDGATILKNMKVIHPAAKMLVDLSQSQDIEAGDGTTTVVVLAGALLNASSSLLAKGIHPMAIASSFLRAADKAVEFLE-DISKPVDLADRDSLLNAVETCLSSKVVAQNSDLLAPMAVDSVLGIV-DDVETSTNVDLNDIRLVTQLGGTVDDTELVKGLVLNKGANKTAgGATNMKNAKIALIQYCLSAPKTDMDNNVVVSDYSAMDRILREERKFILGQCKAIKKSGANVLLIQKSIlrdayNELSLHFLAKMGILVVTDIARNDIEFICRTLGCQPVAH------PDQMKADKLGFAENVSDVLMegGSTKVVKFTGVQNpGKTMTVLLRGSNQFVLGEAERSLHDAQCVVRAFVKKRCMIAGGGAAETEASLRLHKYSQELAGMDAYCFQAFADALELIPYTLAENAGMRPIDVVTELRKQHAEG--------VKGAGINVKKGKVSDMYEMNVVQPLLVSTSAIQLATECVSMIMKIDDLVVV 538
                  899***********************************************************************************************************************96.5999***************************************995.5667889999**************************988765516789************************************************************999876555689*****************************997754......56788899*******99988324566777777665257889**********************************************************************************************999764........5678********************************************987 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.9   7.4    2e-107  8.2e-105      12     520 ..      22     538 ..      17     541 .] 0.92

  Alignments for each domain:
  == domain 1    score: 348.9 bits;  conditional E-value: 2e-107
    TIGR02345  12 dtsqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkk.....liGvkkvkGGaledsvlvkGvafkktfs.yaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsi.....GdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqi..Gserynlftggek.akactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetika 520
                  + s+Gk    sni a++aia++++t lGPrGmdkl++ ++   ++sndGatilk++ ++hPaak+lvd+++sqd e GdGtt+vvvlag ll+++  l+ +g+hp  i  ++ +a   a+e+l++i+  +d      r+ l +  +t+lssk++a++ + ++ m vd+vl + +d   ++     +i +    GG+++d+ lvkG+ ++k     aG      +++n ki+l+   l       + ++ v+d     +i+  e k il + + i++sGanv+l ++si      +l+  ++a+  i+    +  +d++ + ++ G++ ++  ++++ad+lG  +   +  +  Gs++   ftg+++ +k+ t++lrG+ + +l eaerslhda ++vr  +k++ ++aGGGa e e s  l+++s++++g     ++a+a+ale iP++laenaG+  i+++ +lrk+ha+ g k aG+++++ ++ d+ e  v +Pllv   a++ ate  ++i+++d+ +++
  MMETSP1061-20121228|12890_1  22 ERSKGKDVRTSNIVAAKAIANAVRTSLGPRGMDKLMQLENGeILISNDGATILKNMKVIHPAAKMLVDLSQSQDIEAGDGTTTVVVLAGALLNASSSLLAKGIHPMAIASSFLRAADKAVEFLEDISKPVD---LADRDSLLNAVETCLSSKVVAQNSDLLAPMAVDSVLGIVDDVETSTnvdlnDIRLVTQLGGTVDDTELVKGLVLNKGANkTAGG---ATNMKNAKIALIQYCLSAPKTDMDNNVVVSDYSAMDRILREERKFILGQCKAIKKSGANVLLIQKSIlrdayNELSLHFLAKMGILVVTDIARNDIEFICRTLGCQPVAHPDQMKADKLGFAENVSDVLMegGSTKVVKFTGVQNpGKTMTVLLRGSNQFVLGEAERSLHDAQCVVRAFVKKRCMIAGGGAAETEASLRLHKYSQELAGMDAYCFQAFADALELIPYTLAENAGMRPIDVVTELRKQHAE-GVKGAGINVKKGKVSDMYEMNVVQPLLVSTSAIQLATECVSMIMKIDDLVVV 538
                  578999999***************************98888689***********************************************************************************9999...566899******************************99977665554442244444456***************9976515664...45789*********99885555556799*************************************9954444568899*******************************************99999876655999*******976479*****************************************************************************************************9.999********************************************98875 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.7   7.3  6.9e-105  2.8e-102      18     519 ..      28     538 ..      14     541 .] 0.94

  Alignments for each domain:
  == domain 1    score: 340.7 bits;  conditional E-value: 6.9e-105
    TIGR02346  18 eavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsek..fnvdnirvvkllGgslsdsevlkGlvlkreae...gsvkrvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsv.....sdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvk..veeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiima 519
                  +    ni a k +++ +rtslGP+gm+kl+     +++++nD atil++++v hPaak+lv++s+ q+ e GDgt  v+vlag+lL+ +++l+  G++p+ i + +  a++ka+e Le+++  +  dl++++ l++a++++lssk +++  d+la +  ++++ ++ + +++   +++ ir v  lGg++ d e++kGlvl++ a+   g  +++k+ak+a  +  l + +t+    v++ +   +    + e k i  + k+i++sg++v++ + s+     ++l lh++ k +ilv+   ++ ++  +c+++g +++++ ++ + ++lG+ ++v+  ++e gs+kv+ +   ++ +k+ t++LrGs + +l + er+++D   vv+a vk+  +++G+ga+e e + +l+ky+++l g++ y+++ fa a e+iP tlaenaG+ + +v+++L  +h +g k +gi+++k+++   d+ e ++   l   ++ai+late++  ++k+D +++ 
  MMETSP1061-20121228|12890_1  28 DVRTSNIVAAKAIANAVRTSLGPRGMDKLMQLENGEILISNDGATILKNMKVIHPAAKMLVDLSQSQDIEAGDGTTTVVVLAGALLNASSSLLAKGIHPMAIASSFLRAADKAVEFLEDIS--KPVDLADRDSLLNAVETCLSSKVVAQnSDLLAPMAVDSVLGIVDDVETStnVDLNDIRLVTQLGGTVDDTELVKGLVLNKGANktaGGATNMKNAKIALIQYCLSAPKTDMDNNVVVSDYSAMDRILREERKFILGQCKAIKKSGANVLLIQKSIlrdayNELSLHFLAKMGILVVTDIARNDIEFICRTLGCQPVAHPDQMKADKLGFAENVSdvLMEGGSTKVVKFTGVQNPGKTMTVLLRGSNQFVLGEAERSLHDAQCVVRAFVKKRCMIAGGGAAETEASLRLHKYSQELAGMDAYCFQAFADALELIPYTLAENAGMRPIDVVTELRKQHAEGVKGAGINVKKGKV--SDMYEMNVVQPLLVSTSAIQLATECVSMIMKIDDLVVV 538
                  455679************************9999*************************************************************************************96..6789******************998769**************98766551166669***********************97762226778**********************************************************99888776665589*************************************************9975579**********************************************************************************************************************************9987..7********************************99875 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.5  10.0     3e-90   1.2e-87       9     513 ..      23     537 ..      17     541 .] 0.91

  Alignments for each domain:
  == domain 1    score: 292.5 bits;  conditional E-value: 3e-90
    TIGR02341   9 eeraenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrl....kgstn..leaiqiikklggklddsyldegfllekkigvnq..pkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvf.inrqliyn.ype...qlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeili..gedkllkfsgvkl.geactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniik 513
                  + ++++ r s +v a a+ + v+++lgp+gmdk+++ ++   +i+++ndgatilk++ +  paak+lvd+s+ qd e gdgtt+v+vla  ll+ + +l++k ihp +i + + +a++ a e l+  +  +  d    r+ ll+  +t lssk+++q+ d +a +avd+vl +      stn  l++i+++ +lgg +dd+ l +g++l+k           ++naki + +  l + k  +   +v v   + + ++ + e++ +  + + i+k + nv+ i++ ++ + y e    ++a++g+  +     + +e ++  +g + v+  d+ +  klg  + + ++l+  g  k++kf+gv+  g++ t++lrg+ q +l eaerslhda +v+   vk+  +++ggg+ae   +  +++ +q+ ag +a   +afa al+ +p  la+nag+   ++v++lr +haeg + ag+++++g+++d+ ++ +v+ + +  + +  a+e+  +++++d+++ 
  MMETSP1061-20121228|12890_1  23 RSKGKDVRTSNIVAAKAIANAVRTSLGPRGMDKLMQLENG--EILISNDGATILKNMKVIHPAAKMLVDLSQSQDIEAGDGTTTVVVLAGALLNASSSLLAKGIHPMAIASSFLRAADKAVEFLEDIS--KPVD-LADRDSLLNAVETCLSSKVVAQNSDLLAPMAVDSVLGIvddvETSTNvdLNDIRLVTQLGGTVDDTELVKGLVLNKGANKTAggATNMKNAKIALIQYCLSAPKTDMD-NNVVVSDYSAMDRILREERKFILGQCKAIKKSGANVLlIQKSILRDaYNElslHFLAKMGILVVTDIARNDIEFICRTLGCQPVAHPDQMKADKLGFAENVSDVLMegGSTKVVKFTGVQNpGKTMTVLLRGSNQFVLGEAERSLHDAQCVVRAFVKKRCMIAGGGAAETEASLRLHKYSQELAGMDAYCFQAFADALELIPYTLAENAGMRPIDVVTELRKQHAEGVKGAGINVKKGKVSDMYEMNVVQPLLVSTSAIQLATECVSMIMKIDDLVV 537
                  4467899****************************99877..9*********************************************************************************8754..5555.4459*******************************97522227899833568***********************987665422689*****************9975.566677778899***********************972455544432555322567999***9999999***********************************9877899********8559*******************************************************************************************************************************************************985 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.35   1.4e+02     315     334 ..       1      20 [.       1      29 [. 0.90
   2 !  254.3   8.0   1.1e-78   4.5e-76      12     523 ..      24     536 ..      18     541 .] 0.94

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.35
    TIGR02347 315 rrakrrnlerltlacGGeal 334
                  rr kr+n++  t+a+GGe  
  MMETSP1061-20121228|12890_1   1 RRYKRKNIDPGTMATGGERY 20 
                  8****************975 PP

  == domain 2    score: 254.3 bits;  conditional E-value: 1.1e-78
    TIGR02347  12 lrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeee...idlfmveilemkhklevdtklirGlvldhGarh.PdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvi..geekytfieevknP.ksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevl 523
                  ++ +++ + n+ aak++++ ++t lGP+G  k++    G+i +  dG ++lk+++++hP+a+++   + +qd  +GdGtt++v+l+g+ll+ + +l++ g+hP  ++  +  a ++a+efle++  k  +  dr+ ll+++ t+l  k+ a+  d l+ + vd+vl i +d e+   +dl  +  ++    +  dt+l++Glvl+ Ga    +  +++kn+ i  +   l   kt++  ++v s+    +++++ erkf+  + k i +   +v+  ++      i +   ++lsl  lak gil +  + r ++e +  + G +++   ++++ ++lG+a  v +  +  g  k    + v+nP k++t+l++g+n++ l   + +++d    v+  ++ +c++aG ga e  ++ +l+++ +++ G +    +afa+al  iP +l+en+G+  ++v+++l++++ e+ +  g+++++g+  +  + ++   + v   +++ at   s ++ +d+++
  MMETSP1061-20121228|12890_1  24 SKGKDVRTSNIVAAKAIANAVRTSLGPRGMDKLMQLENGEILISNDGATILKNMKVIHPAAKMLVDLSQSQDIEAGDGTTTVVVLAGALLNASSSLLAKGIHPMAIASSFLRAADKAVEFLEDI-SKPVDLADRDSLLNAVETCLSSKVVAQNSDLLAPMAVDSVLGIVDDVETstnVDLNDIRLVTQLGGTVDDTELVKGLVLNKGANKtAGGATNMKNAKIALIQYCLSAPKTDMDNNVVVSDYSAMDRILREERKFILGQCKAIKKSGANVLLIQKS-----ILRDAYNELSLHFLAKMGILVVTDIARNDIEFICRTLGCQPVAHPDQMKADKLGFAENVSDVLMegGSTKVVKFTGVQNPgKTMTVLLRGSNQFVLGEAERSLHDAQCVVRAFVKKRCMIAGGGAAETEASLRLHKYSQELAGMDAYCFQAFADALELIPYTLAENAGMRPIDVVTELRKQHAEGVKGAGINVKKGKVSDMYEMNVVQPLLVSTSAIQLATECVSMIMKIDDLV 536
                  555667788*******************************************************************************************************************.678889************************************998755333499999999999999999*************976156799************************************************9998777776665533.....55778899***************************************************999884456677777889999789****************************************************************************************************************************************************986 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   1.9   6.4e-19   2.6e-16      18     185 ..      37     200 ..      25     207 .. 0.84
   2 !   32.4   0.1   1.8e-11   7.3e-09     391     520 ..     402     536 ..     388     540 .. 0.85

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 6.4e-19
    TIGR02348  18 vdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkeeiaqvatisanndeeiGeliaeamekvgkdGvitveesksletel 185
                   +++a+av++ lGP+g + +++ + G   i +dG t+ k++++ ++     ak++ + ++  +  aGdGttt +vla a+++     +a G  p+++     +a++k+ve l++ sk+v+ ++  + + ++ +  ++++    ++ ++ ++ d v+ + +  +++t++
  MMETSP1061-20121228|12890_1  37 AKAIANAVRTSLGPRGMDKLMQLENGEILISNDGATILKNMKVIHPA----AKMLVDLSQSQDIEAGDGTTTVVVLAGALLNASSSLLAKGIHPMAIASSFLRAADKAVEFLEDISKPVDLADRDSLLNAVETCLSSKVVAQNSDLLAPMAVDSVLGIVDDVETSTNV 200
                  5789***********************************99887775....77777888888889******************************************************9888777777777776677766667777777777776666655555555 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 1.8e-11
    TIGR02348 391 karvedalnatraavee.GivaGGGvallraaekleelkekse.dekvGveivkraleaPlrqiaenaGkdgavvvekvkekkd...eevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavv 520
                     + da    ra v++  ++aGGG+a  +a+ +l++ +++    ++  ++    ale    ++aenaG+ +  vv ++++++    +  G n ++++ +d++e+ ++ p  v  sa+q a+   ++++  + +v
  MMETSP1061-20121228|12890_1 402 ERSLHDAQCVVRAFVKKrCMIAGGGAAETEASLRLHKYSQELAgMDAYCFQAFADALELIPYTLAENAGMRPIDVVTELRKQHAegvKGAGINVKKGKVSDMYEMNVVQPLLVSTSAIQLATECVSMIMKIDDLV 536
                  556789999999999763789****************76666547788999999***999999********9988888887755122468*************************************99877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.47
# Mc/sec: 1519.28
//
Query:       MMETSP1061-20121228|12891_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-15   54.9   0.0    1.4e-15   54.9   0.0    2.0  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    1.1e-14   52.1   0.0    1.1e-14   52.1   0.0    2.1  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.1e-13   48.3   0.0    2.5e-13   47.0   0.0    1.5  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    3.3e-06   24.2   2.8    1.6e-05   21.9   0.0    2.9  3  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    4.5e-06   24.0  25.0    6.3e-06   23.5  17.3    1.2  1  TIGR02794 tolA_full: protein TolA
  ------ inclusion threshold ------
      0.012   13.3   0.0       0.03   12.0   0.0    1.6  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
        2.4    3.5  33.9        3.5    3.0  23.5    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   2.8       1.8     1e+03     409     470 ..      86     147 ..      43     208 .. 0.58
   2 !   54.9   0.0   2.3e-18   1.4e-15      90     269 ..     336     507 ..     328     540 .. 0.80

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.8
    TIGR01241 409 lGmseklgavayeeeeeevllgkelkkekeyseetak.eiDeevkriieeaykkakeilkekk 470
                  + m ++ ++++ e ee+   l  ++++e++ +e + + e  ++v ++  ++y + ++ lk+++
  MMETSP1061-20121228|12891_1  86 YTMQQRSQNIEREAEEARKTLDAQTQHERHRAEYMDElERKRQVDMLNAQKYMQEEQ-LKKQE 147
                  445555555555544433333333344433333332211122333333333333222.22222 PP

  == domain 2    score: 54.9 bits;  conditional E-value: 2.3e-18
    TIGR01241  90 kGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGa.srvrDlfeqakknaPc.iifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlv 269
                  + +ll G+PGtGkt++a+ +a  +g  f  ++G d   +  G  a + +  lf+ ak +  + ++fiDe Da  ++r+++  + +d+r ++Ln +L    G e+ ++ +++ a n+p+ +D+a+l   r D  v  d+P +++r+e++++++ k  +++   +k+v   t G+  a+++  v
  MMETSP1061-20121228|12891_1 336 RHLLLHGAPGTGKTMFARGLAHHSGLDFAILTGGDIAPL--GRDAvTELHKLFDWAKTSRKGlLLFIDEADAFLQNRETTRIS-EDQR-NALNAFLFRT-GTES-NQFMMVYASNQPNQFDPAML--DRVDEMVEFDLPGIEERREMIAMYIDKYLIKPPGYAKTV--ITDGIGPAEIEEAV 507
                  6689*******************************9875..55442578999*****87765268************997444.4555.79*****875.6555.566677789**********9..5**********************9999888865555554..34555555555444 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   1.7       1.5   8.9e+02      14      46 ..     101     133 ..      74     161 .. 0.60
   2 !   52.1   0.0   1.9e-17   1.1e-14     155     359 ..     334     545 ..     323     549 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.5
    TIGR01242  14 ekkllekekirlereverlrselerlrsppllv 46 
                  e ++  + +++ er    + +eler r+  +l 
  MMETSP1061-20121228|12891_1 101 EARKTLDAQTQHERHRAEYMDELERKRQVDMLN 133
                  333333344555555666666666665555444 PP

  == domain 2    score: 52.1 bits;  conditional E-value: 1.9e-17
    TIGR01242 155 ppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGa.rlvrevfklakeka.psiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklae.....dv........dleelaklteGasGadlkaivteaGmfaireerdkvtmedflka 359
                  p + +ll+G pGtGkt++a+ +a+++   f  + g ++    +G  a   ++++f+ ak      ++fide da   +r  +  s d   qr  l+ +    G ++  +  ++ a+n+++ +dpa+l   r d ++e  lp +e r+e++ ++  k  +++      v        ++ee  k+teG+sG  +  +++     a   e +++ +e f k+
  MMETSP1061-20121228|12891_1 334 PFRHLLLHGAPGTGKTMFARGLAHHSGLDFAILTGGDIAP--LGRDAvTELHKLFDWAKTSRkGLLLFIDEADAFLQNRETTRISED---QRNALNAFLFRTGTESN-QFMMVYASNQPNQFDPAML--DRVDEMVEFDLPGIEERREMIAMYIDKYLIKPpgyakTVitdgigpaEIEEAVKMTEGFSGRSISKLAIAWQAAAYGTEGAVLDKETFFKT 545
                  67889**************************999999865..56554166899*****976515679********999977777655...78888777777888875.5678899***********9..59*******************9999887665411111112222233378888889999998888776666555566666666666666655 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   4.3e-16   2.5e-13     211     389 ..     334     522 ..     324     547 .. 0.73

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 4.3e-16
    TIGR01243 211 ppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenaps.iifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvd.............ldklaevthgfvgadlaala 389
                  p + +ll g pgtgkt++a+ +a   g  f  + g +i      ++  +l ++f+ a+      ++fide da    re +    ++r   + + +  g  +  + +++ a+n+p+ +dpa+    r d  +e   p  e r+e++ ++  +  +++                +++  ++t gf g  ++ la
  MMETSP1061-20121228|12891_1 334 PFRHLLLHGAPGTGKTMFARGLAHHSGLDFAILTGGDIAP-LGRDAVTELHKLFDWAKTSRKGlLLFIDEADAFLQNRETTRISEDQRNALNAFLFRTG-TESNQFMMVYASNQPNQFDPAML--DRVDEMVEFDLPGIEERREMIAMYIDKYLIKPPGYaktvitdgigpaeIEEAVKMTEGFSGRSISKLA 522
                  6677888888888888888888888888888888888865.3446677888888888876654167888888888888876555555544444334444.56678888888888888888875..68888888888888888888888887777766544467777777777788888888888887766554 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.6      0.26   1.5e+02     209     275 ..     196     265 ..     125     277 .. 0.56
   2 !   21.9   0.0   2.8e-08   1.6e-05      15      91 ..     320     404 ..     305     418 .. 0.75
   3 ?    0.2   0.0      0.11        64      34      63 ..     482     512 ..     455     522 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.26
    TIGR00635 209 aqvkeekvinkkiakealek.lkvdelGldel..DrklLkaliekfeggPvGletlaaalgedaetledv 275
                   ++k+e++ +++ ++++++   k+  +Gl++   D++ L+    ++ g  vG+ t  +++g++ + +e  
  MMETSP1061-20121228|12891_1 196 DKLKQEAIEKRDTVLKGIQDaGKMIGEGLQSYldDTTKLRNTALTVTGIAVGVYTARTSIGITGRFVEAR 265
                  2344444555667777776645677788887444778888888888888888888888888888877764 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 2.8e-08
    TIGR00635  15 klqlfikaakkrkealdhvllyGPPGlGkttlakiiakelgvklkitsgpalek.pgDlaailtal.......eegdvlfiDeih 91 
                  k+ ++   +kk+k+   h+ll G PG Gkt +a+ +a+  g +  i +g+ +    +D ++ l +l       ++g +lfiDe  
  MMETSP1061-20121228|12891_1 320 KIAVSTANTKKNKAPFRHLLLHGAPGTGKTMFARGLAHHSGLDFAILTGGDIAPlGRDAVTELHKLfdwaktsRKGLLLFIDEAD 404
                  4566667778999999******************************999988641456655555543332222456677888765 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.11
    TIGR00635  34 llyGPPGlGkttlakii.akelgvklkitsg 63 
                  +l+ PPG  kt ++  i  +e++  +k+t+g
  MMETSP1061-20121228|12891_1 482 YLIKPPGYAKTVITDGIgPAEIEEAVKMTEG 512
                  5778********9975526899999999876 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5  17.3   1.1e-08   6.3e-06      78     227 ..      48     207 ..      11     289 .. 0.47

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.1e-08
    TIGR02794  78 kleqqaeeakkkqaaeqarqkelekqraaaekaak.kaeeaakekeekkkqaeeakakqaaEakakaeaeaKa......ekkakee...AakkaEeeakakaaaeakkkaEaeeakkkaeaeak.Kakae.aeaKakae.eakaKaeae..AkaKAeaeAkaKae 227
                  ++++  + ++++ a e  +++e  kq  a +k a  +a + +++ ++ +++aeea+ k  + +++++     a      e+k++ +   A+k   ee+  k+++e  +++E e  +k ae ea+ K k e a+a+a+a+   +++ e       K ++eA +K +
  MMETSP1061-20121228|12891_1  48 AARELDASKNAASAIELIKTQEVTKQHEASAKRAEmEAYTMQQRSQNIEREAEEAR-KTLDAQTQHERHR--AeymdelERKRQVDmlnAQKYMQEEQ-LKKQEEMVARQE-EMRRKTAEHEAAlKTKMElAKAQAQADgRIRQERENHdlILDKLKQEAIEKRD 207
                  11111111122222222222222222222222111122222222222334443332.3222222222222..22344444444444443333333333.334444444443.12233344444444332213333333332222222224444555555555544 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   5.1e-05      0.03      24      50 ..     337     363 ..     314     367 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.1e-05
    TIGR00150  24 vvlLkGdlGaGKttlvkgllkglGiqg 50 
                   +lL+G  G+GKt + +gl+++ G++ 
  MMETSP1061-20121228|12891_1 337 HLLLHGAPGTGKTMFARGLAHHSGLDF 363
                  479*******************99985 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0  23.5     0.006       3.5     330     519 ..      48     233 ..      40     246 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.006
    TIGR02168 330 skkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksk 519
                  + +e ++ + a+++ el +++e  ++ ea++++ae+e+  +++r+++ e+e+ee+r+ +++ ++ ++  ++ + +le++ +   ++++ +k  +ee+ kk+ee+ a+ +e++++ +e+e++l+++ e  ++  +a  ++++e e+    l+k+++e   +++r ++l+ +q++ + + eg++  l+   k
  MMETSP1061-20121228|12891_1  48 AARELDASKNAASAIELIKTQEVTKQHEASAKRAEMEAYTMQQRSQNIEREAEEARKTLDAQTQHERHRAEYMDELERKRQ--VDMLNAQKYMQEEQLKKQEEMVARQEEMRRKTAEHEAALKTKMELAKAQAQADGRIRQERENHDLILDKLKQEA--IEKRDTVLKGIQDAGKMIGEGLQSYLDDTTK 233
                  333344444444444566667777777777777777788888888888888888877777666666555555555544322..22223334445555566666777777777777777777777777777777777777777777777777776654..5566677777777777777777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       542  (0.132131); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.17s 00:00:00.60 Elapsed: 00:00:00.36
# Mc/sec: 2104.49
//
Query:       MMETSP1061-20121228|12905_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 2025.53
//
Query:       MMETSP1061-20121228|12924_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-05   23.8   0.0    1.3e-05   23.5   0.0    1.2  1  TIGR01410 tatB: twin arginine-targeting protein translocase TatB
      5e-05   20.7   2.5    7.6e-05   20.1   0.2    2.0  2  TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family


Domain annotation for each model (and alignments):
>> TIGR01410  tatB: twin arginine-targeting protein translocase TatB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   6.5e-09   1.3e-05       1      74 [.       4      75 ..       4      81 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 6.5e-09
    TIGR01410  1 fdiGfsELlviavValvvlGPerLPkairavgklvralrklasdvkneldeelk.leelkeelkeveklrilnlt 74
                 f++G  E+++i+ V+  v+GP++L  ++   g++ ++l++ + d+ +el++  + ++   ee+ e  k+r+ ++ 
  MMETSP1061-20121228|12924_1  4 FGLGAPEIVIILAVGAFVIGPQQLGSMA---GNFAGTLKDEYADLPDELRKIPEeFQKGYEETTENAKARNAKPM 75
                 78999*******************9875...77778889999999999987544334433444444445555554 PP

>> TIGR01411  tatAE: twin arginine-targeting protein translocase, TatA/E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.2   3.7e-08   7.6e-05       1      35 [.       5      39 ..       5      40 .. 0.96
   2 ?    0.3   0.1     0.055   1.1e+02      36      45 ..      55      64 ..      54      66 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 3.7e-08
    TIGR01411  1 glsatelliilvvilLlFGakKLpelgrdlGkaik 35
                 gl+a+e++iil v + + G+ +L +++++++ ++k
  MMETSP1061-20121228|12924_1  5 GLGAPEIVIILAVGAFVIGPQQLGSMAGNFAGTLK 39
                 69*****************************9998 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.055
    TIGR01411 36 eFKkalkeee 45
                 eF+k+ +e +
  MMETSP1061-20121228|12924_1 55 EFQKGYEETT 64
                 8****99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 534.24
//
Query:       MMETSP1061-20121228|12951_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.2e-113  376.8   0.0   2.5e-113  376.6   0.0    1.0  1  TIGR01357 aroB: 3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> TIGR01357  aroB: 3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  376.6   0.0  6.2e-117  2.5e-113       1     341 [.      88     434 ..      88     437 .. 0.95

  Alignments for each domain:
  == domain 1    score: 376.6 bits;  conditional E-value: 6.2e-117
    TIGR01357   1 ykvkvgegllk.klveelae..kasklvvitdeeveklv.aekleealkslgvevlvlvvpdgeesKsletvaklldqlleeklerksvlvaiGGGvvgDlaGFvAatylRGirlvqvPTtllamvDssvGGKtginlplgkNliGafyqPkaVlidlkvletlperelreGmaEviKhgliadaelfeelekneklllklaelealeelikrsievKaevVeeDekesglRalLNfGHtlgHaiEallkyk.lsHGeaVaiGmvveaklseklgllkaellerlvallkklglptklkk..klsveellkallkDKKnegskiklvlle.eiGkaalasevteeelle 341
                  y++++g+++++ +++e+l+   + ++++vit+++++ +   ek e +l+    ev++lv+pdge++K+++ ++++ld+ leekl+rk + va+GGGv+gD++GF+Aa+y+RG+++vq+PTt++am DssvGGKtg+n+plgkN++Gaf+qP+ V+id++ l+tlp+rel++G+aE+iK+gli d+elfe+le+n ++ll+++  ea++ ++krs+e KaevV++De+e+g+Ra+LN+GHt+gHaiE+ ++y+ + HGeaVaiG ++++ +s ++g +++el++r+ +ll+k++lpt+l+    ++ + +l+++  DKK  +++++l+lle ++G+++ + +++e+++++
  MMETSP1061-20121228|12951_1  88 YPIYIGTSFTDeQISETLTAhiHGKQALVITNDRIAPMGfLEKYETLLAP-HKEVHTLVLPDGESHKTMDILQRILDKALEEKLDRKCTFVALGGGVIGDMVGFAAAIYQRGVDFVQIPTTVMAMTDSSVGGKTGVNHPLGKNMVGAFHQPQCVFIDTDSLTTLPDRELQSGIAEIIKYGLIRDRELFEWLEDNMDKLLQRDP-EATRYAVKRSCENKAEVVKADEREAGVRATLNLGHTFGHAIESGSGYGtWLHGEAVAIGTAMATTMSARMGWIDRELVDRTYRLLEKANLPTDLPVdsPMNRDLFLRYMAADKKVANGQLRLILLEgALGNCVFTGDFDEQAMID 434
                  6899*******99999999875559**********998548888888876.99***********************************************************************************************************************************************9998655.************************************************9********************************************9986789999**********************9569***9999998877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1868.47
//
Query:       MMETSP1061-20121228|12957_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   13.0   7.0     0.0069   14.6   3.0    1.6  2  TIGR02473 flagell_FliJ: flagellar export protein FliJ
      0.038   11.6   0.9      0.042   11.5   0.6    1.1  1  TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
      0.085    8.3   6.9      0.087    8.3   4.8    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.09    8.2   6.6      0.092    8.2   4.6    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02473  flagell_FliJ: flagellar export protein FliJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   14.6   3.0   6.7e-06    0.0069      72     113 ..       3      44 ..       1      61 [. 0.89
   2 ?   -0.6   0.0      0.33   3.4e+02      11      23 ..      57      69 ..      47      70 .] 0.49

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.7e-06
    TIGR02473  72 qldeaieqqqqelaelekeleakrerlleaakelkalekLke 113
                  + +e+i+ +q++l+++ ++le+k + l++++++lk le +  
  MMETSP1061-20121228|12957_1   3 KSKEEIQALQETLSNTHATLEQKETVLVQMREDLKELEDINT 44 
                  6689*********************************97765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.33
    TIGR02473 11 rekeeeqaksela 23
                 +e+  e+++++la
  MMETSP1061-20121228|12957_1 57 KERVAEELEEQLA 69
                 4444445555444 PP

>> TIGR02463  MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.6   4.1e-05     0.042      74     128 ..       7      61 ..       1      68 [. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.1e-05
    TIGR02463  74 eee.prlilGksyeilrlkLeklseelsfklktlddlsdaeiaeltGLsgeqlela 128
                  e++  ++ l + + +l++k  ++  ++++ lk l+d+++a+i+ l GL+  + + a
  MMETSP1061-20121228|12957_1   7 EIQaLQETLSNTHATLEQKE-TVLVQMREDLKELEDINTAKISTLEGLHAGKERVA 61 
                  44447888889999998874.555667799******************98766655 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.8   8.5e-05     0.087     888     949 ..       5      66 ..       1      70 [] 0.31

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 8.5e-05
    TIGR02168 888 eealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlse 949
                  +e++++l+e l+++ ++l++ e+ + +++++l+el++ +++   +le+l +  ++++e+l+e
  MMETSP1061-20121228|12957_1   5 KEEIQALQETLSNTHATLEQKETVLVQMREDLKELEDINTAKISTLEGLHAGKERVAEELEE 66 
                  33333333333333333333333333333333333333333333333333333333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   4.6     9e-05     0.092     433     495 ..       4      66 ..       1      70 [] 0.41

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 9e-05
    TIGR02169 433 ieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelae 495
                   +e+i++l+e+l + ++ ++++e+ l q++edl+++e+   ++ ++le l    + +++el+e
  MMETSP1061-20121228|12957_1   4 SKEEIQALQETLSNTHATLEQKETVLVQMREDLKELEDINTAKISTLEGLHAGKERVAEELEE 66 
                  344444444444444444444444444444444444444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       311  (0.0758167); expected 82.0 (0.02)
Passed bias filter:                      235  (0.0572891); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 355.36
//
Query:       MMETSP1061-20121228|12965_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-51  170.8   0.0    7.3e-51  170.5   0.0    1.1  1  TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
    0.00036   17.7   0.0    0.00053   17.1   0.0    1.2  1  TIGR02088 LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
    0.00082   17.1   0.0     0.0013   16.4   0.0    1.3  1  TIGR02694 arsenite_ox_S: arsenite oxidase, small subunit


Domain annotation for each model (and alignments):
>> TIGR01416  Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.5   0.0   5.3e-54   7.3e-51       2     172 ..      88     249 ..      87     255 .] 0.87

  Alignments for each domain:
  == domain 1    score: 170.5 bits;  conditional E-value: 5.3e-54
    TIGR01416   2 sRRdflvlataav...gavgaaavavplikslnpsakvkaagasvevdvskleegqlltvewrgkpvfilrrtkeeleelkalkkkeLkdpnseaeqtdearelrsgkeewlvvigiCtHLGCiPtlkpeegdkggffCpCHgskydlagrvvkgvPaPenlavPpykfesdtk 172
                  +RR f +l +++v    a +a +++v l++sl+ sa+++a+ a+ + d+s++e g++ltv+wrgkp+fi++rt+ e++e +a+ +++L+dp     +tde+r+l    +ew++v++iC HLGC+P ++ ++g+++g+fCpCHgs+yd +gr++kg PaP nl+vPpykf + ++
  MMETSP1061-20121228|12965_1  88 ERRAFAYLMLTTVrfaYASAARLLVVKLVASLSISASAAAL-ATADFDLSAVEFGETLTVKWRGKPIFIRKRTQPEIDEVRAVPMSSLRDP-----ETDEDRVL---TDEWVIVLAICPHLGCVP-VS-NSGEYNGWFCPCHGSHYDISGRIRKG-PAPLNLEVPPYKFMNSEN 249
                  68887554443331115777888999***************.99***********************************************.....78888777...59****************.55.7999**********************.*************86443 PP

>> TIGR02088  LEU3_arch: isopropylmalate/isohomocitrate dehydrogenases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.9e-07   0.00053     233     265 ..     195     227 ..     182     239 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.9e-07
    TIGR02088 233 lvGslGlaPsaniGdkkalfePvhGsapdiaGk 265
                  +   lG +P +n G+ +  f P hGs +di+G+
  MMETSP1061-20121228|12965_1 195 ICPHLGCVPVSNSGEYNGWFCPCHGSHYDISGR 227
                  45679**************************97 PP

>> TIGR02694  arsenite_ox_S: arsenite oxidase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   9.8e-07    0.0013      53      90 ..     191     227 ..     182     251 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 9.8e-07
    TIGR02694  53 afsilcthkGc.pvsyeadaktfkcpchfsvfdpekaGq 90 
                     ++c+h Gc pvs + + + + cpch s +d    G+
  MMETSP1061-20121228|12965_1 191 IVLAICPHLGCvPVSNSGEYNGWFCPCHGSHYDIS--GR 227
                  45689*****98******************99953..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.32
# Mc/sec: 1051.79
//
Query:       MMETSP1061-20121228|12987_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-64  215.1   0.0    1.3e-64  214.9   0.0    1.0  1  TIGR03263 guanyl_kin: guanylate kinase
    2.5e-12   44.7   0.0    3.7e-12   44.1   0.0    1.2  1  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
     0.0048   13.8   0.0      0.018   11.9   0.0    1.8  2  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
     0.0057   14.1   0.1       0.28    8.6   0.0    2.3  2  TIGR01351 adk: adenylate kinases
  ------ inclusion threshold ------
      0.011   13.3   0.1       0.15    9.5   0.0    2.2  2  TIGR00041 DTMP_kinase: thymidylate kinase
      0.017   11.5   0.0      0.026   10.9   0.0    1.3  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
      0.017   12.8   0.1        2.3    6.0   0.0    2.2  2  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
      0.027   11.8   0.0      0.073   10.3   0.0    1.6  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
      0.029   10.8   0.0      0.042   10.3   0.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
      0.033   11.0   0.0      0.046   10.5   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
      0.034   10.6   0.0      0.047   10.1   0.0    1.1  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit


Domain annotation for each model (and alignments):
>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.0   3.6e-67   1.3e-64       3     179 ..       9     190 ..       7     191 .. 0.96

  Alignments for each domain:
  == domain 1    score: 214.9 bits;  conditional E-value: 3.6e-67
    TIGR03263   3 livisgpsGvGKstlvkklle..ekeelklsvSattRkpRegEvdgkdYfFvskeefeekikeeeflEwaevvgnyyGtskkeveealkegkdvlleidvqGakqvkkklpeavsifilppsleeLeeRlkkRgtdseeviekRlekAkkelkaaee...fdyvivNddlekaveelksiik 179
                   ivi+gpsGvGK+tl+++l++   ++++ +svS+ttRkpRegEvdgk+Y+F++ e+++++i++++f+E+aev+gnyyGts ++ve+++k+++ ++l+id+qG+++vkk+  e ++ f+ ppsleeLe+Rl++Rgt++ee+i+kRl+++k+e+++ +e   fd + vN dl++++eel+s+++
  MMETSP1061-20121228|12987_1   9 PIVICGPSGVGKGTLIEMLFKrfPNDQFGFSVSHTTRKPREGEVDGKHYNFTTVEDIKKEISDGKFVEYAEVHGNYYGTSVAAVESVQKQNRICILDIDIQGVMEVKKSSLEPLYFFVSPPSLEELEKRLRGRGTETEESIKKRLANSKQEMDYGHEagnFDRIFVNADLKETFEELASVVR 190
                  69*******************555667*****************************************************************************************************************************98776666******************9986 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0     1e-14   3.7e-12       4     178 ..      10     191 ..       8     192 .. 0.75

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 1e-14
    TIGR02322   4 ilvvGpsGaGKDtlldlararladeprvlfarRvitRe...adaggEdhealseeeFeeredegafalsWqahGlkYgipveidewleaGkvv.vvngsRavlpeararyanllvvaitasp...dvLaqRLaaRgResaeeieeRLarsaela...aeeadvttidnsgsleqagetllrllrk 178
                  i++ GpsG GK tl++++ +r+ ++ ++ f     tR+    ++ g   +  + e+ +++ ++g+f    + hG +Yg  v+  e++++ + + ++    + + e+++  ++l ++   +sp   + L +RL+ Rg e++e+i++RLa s++      e  +   i  +++l+++ e+l +++r+
  MMETSP1061-20121228|12987_1  10 IVICGPSGVGKGTLIEMLFKRFPND-QFGFSVSHTTRKpreGEVDGKHYNFTTVEDIKKEISDGKFVEYAEVHGNYYGTSVAAVESVQKQNRIcILDIDIQGVMEVKK--SSLEPLYFFVSPpslEELEKRLRGRGTETEESIKKRLANSKQEMdygHEAGNFDRIFVNADLKETFEELASVVRE 191
                  7899******************999.4888877778751115556666667788999***********************9988888877766155665555544444..45555555554422278999*******************999874444455566677788888888888888775 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   4.9e-05     0.018     145     172 ..       8      35 ..       5      49 .. 0.90
   2 ?   -1.1   0.0      0.43   1.6e+02      87     129 ..     148     190 ..     142     196 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.9e-05
    TIGR02788 145 kniiisGgtgsgKTTflkalvkliPkee 172
                  k i+i+G +g gK T++++l k +P+++
  MMETSP1061-20121228|12987_1   8 KPIVICGPSGVGKGTLIEMLFKRFPNDQ 35 
                  67***********************997 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.43
    TIGR02788  87 tiRkpslkdlslddy.eekGffdeaveestelsdadeellellk 129
                  +i+k   ++++ +dy +e G fd+ +  +++l+++ eel ++ +
  MMETSP1061-20121228|12987_1 148 SIKKRLANSKQEMDYgHEAGNFDR-IFVNADLKETFEELASVVR 190
                  677777777777888345699986.3344456666666666655 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00075      0.28       2      23 ..      10      31 ..       9      46 .. 0.90
   2 ?    3.4   0.0      0.03        11     152     204 ..     134     186 ..     108     193 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00075
    TIGR01351  2 lvllGpPGsGKGTqakrlaekl 23
                 +v+ Gp G+GKGT  + l +++
  MMETSP1061-20121228|12987_1 10 IVICGPSGVGKGTLIEMLFKRF 31
                 79************99998876 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.03
    TIGR01351 152 taellkqReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkieevl 204
                    ++l+ R   tee +kkRl   k++++  +e  +   ++v+ d ++++ee+ 
  MMETSP1061-20121228|12987_1 134 LEKRLRGRGTETEESIKKRLANSKQEMDYGHEAGNFDRIFVNADLKETFEELA 186
                  55678889999*********999999887777766666677766666666655 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00041      0.15       7      46 ..      10      52 ..       6      75 .. 0.79
   2 ?    1.6   0.0      0.11        42     112     171 ..     106     163 ..      94     189 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00041
    TIGR00041  7 iviEGidGaGKTtqlellkkllke..egl.kvlltrEPggtkl 46
                 ivi G  G GK t++e+l k++++   g+   + tr P+++++
  MMETSP1061-20121228|12987_1 10 IVICGPSGVGKGTLIEMLFKRFPNdqFGFsVSHTTRKPREGEV 52
                 89********************995423313467788888776 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.11
    TIGR00041 112 ididlvlelnekalqlkPdlvilLdidpevalerlskrgeldreelekldflekvrekyl 171
                  idi+ v+e++++ l+  P   +      e+  +rl++rg++ +e  +k+    k    y 
  MMETSP1061-20121228|12987_1 106 IDIQGVMEVKKSSLE--PLYFFVSPPSLEELEKRLRGRGTETEESIKKRLANSKQEMDYG 163
                  566666666666666..6555555556688889999999966666666655555555555 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.1e-05     0.026     352     411 ..      11      73 ..       2     100 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.1e-05
    TIGR03719 352 GviGpnGaGkstlfklitgkekpdsGelkiGetvkl...ayvdqsrdalddnktvweeisdGl 411
                   + Gp G+Gk tl++++ ++  +d+  +++ +t +    + vd ++ ++++ + + +eisdG+
  MMETSP1061-20121228|12987_1  11 VICGPSGVGKGTLIEMLFKRFPNDQFGFSVSHTTRKpreGEVDGKHYNFTTVEDIKKEISDGK 73 
                  489**********************99999999864222789999999999999999999996 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.0     0.012       4.4       4      24 ..      12      32 ..      10      81 .. 0.74
   2 ?    6.0   0.0    0.0061       2.3     123     183 ..     134     188 ..     109     190 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.012
    TIGR01359  4 vlGgPGsGkGtqCakiveefk 24
                 + G+ G GkGt  + + ++f 
  MMETSP1061-20121228|12987_1 12 ICGPSGVGKGTLIEMLFKRFP 32
                 77999**********999986 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0061
    TIGR01359 123 llkrgqssGrvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeeveki 183
                  l kr +  Gr  + +es+kkrl   k+e    ++y +++++  +i  + +++e fee+ ++
  MMETSP1061-20121228|12987_1 134 LEKRLR--GRGTETEESIKKRLANSKQE----MDYGHEAGNFDRIFVNADLKETFEELASV 188
                  555555..89999*********876665....67888888888888888888888887765 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0    0.0002     0.073      37      69 ..      10      42 ..       7      46 .. 0.84
   2 ?   -1.7   0.0      0.97   3.6e+02      66      94 ..      94     121 ..      62     153 .. 0.60

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0002
    TIGR02324 37 valsGksGaGkstllkslyanYlpesgrilvrh 69
                 +++ G+sG Gk tl+ +l++ +  ++  + v h
  MMETSP1061-20121228|12987_1 10 IVICGPSGVGKGTLIEMLFKRFPNDQFGFSVSH 42
                 6899****************9988776666665 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.97
    TIGR02324  66 lvrhegeivdlvkaserevlevRrktigy 94 
                   v++++ i  ++ +  + v+ev+++ +  
  MMETSP1061-20121228|12987_1  94 SVQKQNRI-CILDIDIQGVMEVKKSSLEP 121
                  23333333.37777777777777776654 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00011     0.042     369     389 ..      10      31 ..       7      41 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00011
    TIGR02204 369 valvGPsGaGkstllelll.rf 389
                  + + GPsG Gk tl+e+l  rf
  MMETSP1061-20121228|12987_1  10 IVICGPSGVGKGTLIEMLFkRF 31 
                  7899************986155 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00012     0.046     351     372 ..      10      31 ..       7      46 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00012
    TIGR02857 351 valvGaSGaGKstllklllgfv 372
                  ++++G+SG+GK tl+++l    
  MMETSP1061-20121228|12987_1  10 IVICGPSGVGKGTLIEMLFKRF 31 
                  689**************97655 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00013     0.047     364     388 ..      10      34 ..       7      51 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00013
    TIGR02868 364 vavvGasGaGKstLlallaglldpl 388
                  + + G+sG+GK tL+++l++ ++ +
  MMETSP1061-20121228|12987_1  10 IVICGPSGVGKGTLIEMLFKRFPND 34 
                  789**************99877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       269  (0.0655778); expected 82.0 (0.02)
Passed bias filter:                      252  (0.0614334); expected 82.0 (0.02)
Passed Vit filter:                        89  (0.0216967); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.26u 0.18s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 1091.45
//
Query:       MMETSP1061-20121228|12998_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 905.07
//
Query:       MMETSP1061-20121228|13014_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|13027_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.37
# Mc/sec: 2054.75
//
Query:       MMETSP1061-20121228|13042_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.2   1.8      0.023   10.7   1.3    1.2  1  TIGR01702 CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit


Domain annotation for each model (and alignments):
>> TIGR01702  CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.3   5.6e-06     0.023      19      50 ..      56      87 ..      47      95 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.6e-06
    TIGR01702 19 etavdRfeaqekkCkfgkeGlsCrlCanGPCR 50
                 +    R+++ +k C  +++G++Cr C n  CR
  MMETSP1061-20121228|13042_1 56 TRKASRVAEDTKSCSNTEDGITCRACGNFACR 87
                 556789*************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 892.50
//
Query:       MMETSP1061-20121228|13050_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   11.0   0.0      0.041   10.7   0.0    1.1  1  TIGR03470 HpnH: hopanoid biosynthesis associated radical SAM protein HpnH


Domain annotation for each model (and alignments):
>> TIGR03470  HpnH: hopanoid biosynthesis associated radical SAM protein HpnH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0     1e-05     0.041     192     254 ..      11      78 ..       5      91 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1e-05
    TIGR03470 192 vdgilisPgyayekapdqdhflkrektkklfrevfkkgk.....kkkwrfnhsplfldflaGekeyec 254
                  + +  isPg +ye+  +qd++l  +++ +++++ + ++      +k+   +  + f+ f++ e++ +c
  MMETSP1061-20121228|13050_1  11 IADAKISPGDDYEEIREQDRYLPIANIARIMKNTLPENAkiakdSKETVQECVSEFISFITSEASDKC 78 
                  56678************************999987654312111222333334567777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 839.93
//
Query:       MMETSP1061-20121228|13055_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       338  (0.0823988); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 878.24
//
Query:       MMETSP1061-20121228|13058_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1530.10
//
Query:       MMETSP1061-20121228|13064_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.049   11.3   0.0        0.1   10.3   0.0    1.5  1  TIGR03775 RPE3: rickettsial palindromic element RPE3 domain


Domain annotation for each model (and alignments):
>> TIGR03775  RPE3: rickettsial palindromic element RPE3 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   2.5e-05       0.1       5      40 ..     404     442 ..     403     444 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 2.5e-05
    TIGR03775   5 sksFRQDEFqgkpaer..ilvr.ehRqdlqNSlvSSlln 40 
                  ++sF QDEFq+  ++   +l++  h ++  N +vSS ln
  MMETSP1061-20121228|13064_1 404 LESFLQDEFQEVQLQVlgNLHKlSHLLNGMNGVVSSILN 442
                  79*********9999888776536778888888888888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 2798.17
//
Query:       MMETSP1061-20121228|13083_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   12.6   0.0     0.0078   12.5   0.0    1.0  1  TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase


Domain annotation for each model (and alignments):
>> TIGR01417  PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.9e-06    0.0078     499     545 ..      20      70 ..      11      83 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.9e-06
    TIGR01417 499 gvCGElagD.elaillllGlGlrelsmsassilkikm...llkkltikeae 545
                   +C  l  D +++ +l+lGlG++e  +s+ss++ +k    +l++l+++  +
  MMETSP1061-20121228|13083_1  20 ELCAKLPCDgNASKPLILGLGVTEAGLSSSSTTAMKDlydVLAALSKRKRK 70 
                  689999999345679*********999998888877511145555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 485.72
//
Query:       MMETSP1061-20121228|13089_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-12   44.4  10.9    9.9e-12   43.4   7.6    1.5  1  TIGR01571 A_thal_Cys_rich: uncharacterized Cys-rich domain


Domain annotation for each model (and alignments):
>> TIGR01571  A_thal_Cys_rich: uncharacterized Cys-rich domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   7.6   2.4e-15   9.9e-12       2     102 ..      79     226 ..      78     229 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 2.4e-15
    TIGR01571   2 eWetglldcleDislcllglfcpc....vlfgkiaerlg.........tfaeecllaglllililallge................................igllytgavRkklrkkyklqgaice...DflvhlfcclCalcQevre 102
                   W+ gl+dc++   +c  +l+c c    + +++i++r++         ++a++   + ++l+l+++ +++                                 ++++++++R ++r++y ++++ c    D    +fc++C++ Q++r 
  MMETSP1061-20121228|13089_1  79 RWKDGLCDCFS-LGICHPSLCCACwcdkISMAQIMTRMSltwlgkpgpKVATKNTFKVVVLLLAAYTMFStsmeiasvdytpettptpiavmkvigstlfglWSIYSLCKTRESVRRQYSIPEQNCSgceDLCCAVFCTCCTVSQMARH 226
                  7*********7.555555555555222278999999999*****99994444444444333333333333468899***********************998778999**************97666666****************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1227.01
//
Query:       MMETSP1061-20121228|13123_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1382.74
//
Query:       MMETSP1061-20121228|13133_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 541.16
//
Query:       MMETSP1061-20121228|13153_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 1066.07
//
Query:       MMETSP1061-20121228|13164_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 851.10
//
Query:       MMETSP1061-20121228|13165_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-07   27.2   0.0    1.4e-06   26.4   0.0    1.4  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    3.4e-06   25.0   0.1    6.1e-06   24.2   0.1    1.6  1  TIGR01068 thioredoxin: thioredoxin
     0.0001   19.8   0.0    0.00014   19.4   0.0    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
  ------ inclusion threshold ------
      0.027   11.9   0.0      0.037   11.4   0.0    1.3  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
      0.043   10.2   0.0      0.057    9.8   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.7e-09   1.4e-06       6      79 ..      78     160 ..      74     173 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.7e-09
    TIGR01126   6 fdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkke....e...ekvkiakvdataeke..laskfkvsgfPtlkffk 79 
                  ++ ++ ++++ v+++fya WC  C+kl  ++++la ++ ++    +    +v  a v+ t +++  ++++++++g P ++++ 
  MMETSP1061-20121228|13165_1  78 LKWFLEEDERPVVIKFYAKWCKKCQKLGLQFNRLALDMGDHildqQmiyGDVRFAAVEYTPQSQafITEDLQIKGVPDMQVYV 160
                  6667889999************************9776543111111223678888888766441257888889988888765 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   7.4e-09   6.1e-06       5      47 ..      77     119 ..      73     164 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 7.4e-09
    TIGR01068   5 nfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekv 47 
                  +++  +++++++v++ f+A+WC  C+ l   ++ la ++ +++
  MMETSP1061-20121228|13165_1  77 ELKWFLEEDERPVVIKFYAKWCKKCQKLGLQFNRLALDMGDHI 119
                  5666788999******************999999988776655 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.6e-07   0.00014     361     391 ..      84     114 ..      56     130 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.6e-07
    TIGR01130 361 detKdVLvefYApWCGHCkkLapiYeelaek 391
                  ++++ V ++fYA WC  C+kL   +++la  
  MMETSP1061-20121228|13165_1  84 EDERPVVIKFYAKWCKKCQKLGLQFNRLALD 114
                  56788*********************99965 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   4.6e-05     0.037      16      89 ..      38     112 ..      30     143 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 4.6e-05
    TIGR00385  16 llllkrnaegedikelesal.igkpvpaekeaelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkela 89 
                   l++k ++   + +++e  l + k  p+++  e   +++ l+  + +  ++v++ ++a WC +C++     ++la
  MMETSP1061-20121228|13165_1  38 DLQYKSDTTLGETTKIETPLpVRKTKPSKPMVEEIFSLDELKWFLEEDERPVVIKFYAKWCKKCQKLGLQFNRLA 112
                  556666666666666666664455556665555444444444444566789*************98776666666 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   6.9e-05     0.057     368     402 ..      82     116 ..      64     166 .. 0.69

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 6.9e-05
    TIGR00424 368 leerkeawlvvlyapwcpfcqameasyvelaekla 402
                  lee + + ++ +ya wc+ cq +   +  la  + 
  MMETSP1061-20121228|13165_1  82 LEEDERPVVIKFYAKWCKKCQKLGLQFNRLALDMG 116
                  78888899999***********9999999886543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1325.89
//
Query:       MMETSP1061-20121228|13179_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 1010.00
//
Query:       MMETSP1061-20121228|13184_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-21   72.9   0.1    7.3e-20   68.7   0.1    2.2  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    8.1e-17   59.0   0.0    2.1e-14   51.0   0.0    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    4.5e-15   52.2   0.0    7.6e-15   51.5   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    3.2e-11   40.0   0.0    1.8e-06   24.3   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    7.9e-09   32.1   0.1      2e-08   30.8   0.0    1.6  2  TIGR00631 uvrb: excinuclease ABC subunit B
    2.6e-07   27.6   0.0    3.8e-05   20.4   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    1.3e-05   22.3   0.0      3e-05   21.1   0.0    1.5  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    5.3e-05   19.5   0.0    9.8e-05   18.6   0.0    1.3  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
     0.0024   14.7   0.0       0.33    7.7   0.0    2.3  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
  ------ inclusion threshold ------
      0.015   11.4   1.0      0.027   10.6   0.0    1.9  2  TIGR00580 mfd: transcription-repair coupling factor


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.7   0.1   1.8e-22   7.3e-20      27     338 ..     179     519 ..     158     561 .. 0.75

  Alignments for each domain:
  == domain 1    score: 68.7 bits;  conditional E-value: 1.8e-22
    TIGR01389  27 dgrdvlavlPtGGGkslCYqvPaL..llkg.lt........vvisPLisLmkDqvd.qLraaG....veaaalnstlsakeaqeilkalaagelklLYvaPerleqdkflellerlkiallavDeahCvsqWGhDFRpeY...........krlgelaerfpkap.vialta.tadaevredivekLelkdaaef...vssfdRenlafsvvkkenkkkqlleylkkereksGi.iYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkr 338
                  ++rd++++  tG Gk l + +PaL  + k+ ++        +v+sP   L   qv+  Lr+ G    +++ +l  ++ +      +++l++g+++ L  +P rl+        + +k++ l +Dea  +   G +  ++Y           ++ +++  ++p     ia+   t  ++        +  + ++++    s+ +R   + +v++++ +++ l e l+k+++k  i ++a  +k+ e+l+ +L+ +g+++   h+  +++ R +a+ +F     +++vat     G+d +dv  v+ +  P  +e y    GR GR G+   +i++++++D + + +
  MMETSP1061-20121228|13184_1 179 KKRDIVGIAETGSGKTLAFSIPALssMAKNpVAskrrlprmLVLSPTRELA-MQVEvVLREYGavvgMRSLCLYGGVPK---YTQTSELKKGNIDCLVATPGRLKDLINEGSCDLSKVQHLVLDEADRMLDMGFEEDVKYiisncmpkedgRQTAMFSATWPAIIqEIAMNYmTNPVRLYVGFEGIVGSNGENNIddsLSANKRVTQTIEVIEDRPRENRLREILRKHKSKGRIlVFALYKKEAERLEYNLKRDGFDVCSIHGNKHQAARTQALSDFKDGTCQMMVATDVAARGLDIPDVELVLNYTFPLTIEDYVHRIGRTGRAGKSGLSITFFQPSDKSHAGE 519
                  678999999999999999999999432222222333333338999988874.355524776651111455555555443...34456789999999999999999999999999999999999**9999999998877774444444333355666666777766666665413333333333333344445555110556678888999********************877648******************************************************************************************************9765543 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0028       1.1      14      50 ..     167     204 ..     157     228 .. 0.82
   2 !   51.0   0.0   5.2e-17   2.1e-14     216     347 ..     395     526 ..     374     547 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0028
    TIGR00614  14 pvqlevinavlegr.dalvvmatGgGksLCyqlpavvs 50 
                  p q +     ++++ d + +  tG Gk L + +pa+ s
  MMETSP1061-20121228|13184_1 167 PIQAQSWPILMHKKrDIVGIAETGSGKTLAFSIPALSS 204
                  55555555666665599999***************976 PP

  == domain 2    score: 51.0 bits;  conditional E-value: 5.2e-17
    TIGR00614 216 llkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekd 347
                  l++ ++k+      +++ l +k++e++  +L+++g    + h + +++ar++   +f    +q++vat     G++ pdv  v+ y  p  ie Y   +GR GR g    ++ f++p+D +   +l    k+
  MMETSP1061-20121228|13184_1 395 LREILRKHKSKGRILVFALYKKEAERLEYNLKRDGFDVCSIHGNKHQAARTQALSDFKDGTCQMMVATDVAARGLDIPDVELVLNYTFPLTIEDYVHRIGRTGRAGKSGLSITFFQPSDKSHAGELQQVMKQ 526
                  555666444444447999**************************************************9999***********************************************9887776554444 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   1.8e-17   7.6e-15      13     348 ..     164     501 ..     152     529 .. 0.80

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 1.8e-17
    TIGR04121  13 eprafQkevleaaeegesgll.iapTGaGKTlavflpsliela..akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnl.ee.aaevllgeek.eekaklvkakekkalevesllpeeeeklP...waGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrld 348
                  +p + Q + +  + +++  ++ ia TG+GKTla  +p+l+++a    +++++  ++l ++P + La ++e  l++  + +g++ +  l  G  + ++ ++ +k   d L+ Tp  l+ l+ + +    +++++ +v+DE   +l     + ++  ++     + + ++   sAT   + +e a++++++  +     + + +++ ++  ++sl  ++  +            + l e+l++ k++   lvF   ++ aE+l  +L +   +    +   Hg  ++++R++  + +k+g+ +++v+T     G+D  dv+lv++   p  +   + RiGR++ + +
  MMETSP1061-20121228|13184_1 164 KPSPIQAQSWPILMHKKRDIVgIAETGSGKTLAFSIPALSSMAknPVASKRRLPRMLVLSPTRELAMQVEVVLREYGAVVGMR-SLCLYGGVPKYTQTSELKKGNIDCLVATPGRLKDLINEGSC--DLSKVQHLVLDEADRMLDMGFEEDVKYIISNCMPKEDGRQTAMFSATWPAIiQEiAMNYMTNPVRlYVGFEGIVGSNGENNIDDSLSANKRVTQTievIEDRPRENRLREILRKHKSKGRILVFALYKKEAERLEYNLKRDGFD----VCSIHGNKHQAARTQALSDFKDGTCQMMVATDVAARGLDIPDVELVLNYTFPLTIEDYVHRIGRTGRAGK 501
                  478899999998777666655489*******************532334446669999***************9988877776.46677888888999999999***************987655..599********************************************87652331445555554565555556664555555555555433333301133444566788888888888899************99999877766....77779***********************************************************987654 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   4.3e-09   1.8e-06      25     106 ..     153     241 ..     142     300 .. 0.80
   2 !   13.6   0.0   7.6e-06    0.0031     323     380 ..     449     506 ..     417     513 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 4.3e-09
    TIGR03817  25 vvaaleaaGieapwqhqaraae.lahaGehvvvatgtasGkslayllPvlsalaedp......ratalylaPtkalaadqlravkelee 106
                  +++ ++a+G e+p   qa+    l h+ +++v  + t sGk+la+ +P+ls++a++p        + l l+Pt+ la     +++e   
  MMETSP1061-20121228|13184_1 153 IRQCTDANGFEKPSPIQAQSWPiLMHKKRDIVGIAETGSGKTLAFSIPALSSMAKNPvaskrrLPRMLVLSPTRELAMQVEVVLREYGA 241
                  456678999***999999986526788888888999********************65544435689**********988777777655 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 7.6e-06
    TIGR03817 323 ralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvv 380
                  + +kdG+ + ++at+    G+di  ++ v+   fP t+  +  ++Gr+Gr+g+  l +
  MMETSP1061-20121228|13184_1 449 SDFKDGTCQMMVATDVAARGLDIPDVELVLNYTFPLTIEDYVHRIGRTGRAGKSGLSI 506
                  56799************************************************99876 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0      0.58   2.4e+02      58      69 ..     220     231 ..     177     298 .. 0.57
   2 !   30.8   0.0   4.8e-11     2e-08     431     515 ..     393     477 ..     378     503 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.58
    TIGR00631  58 lvlahnktLaaq 69 
                  lvl++ + La q
  MMETSP1061-20121228|13184_1 220 LVLSPTRELAMQ 231
                  233333333333 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 4.8e-11
    TIGR00631 431 dlleeirervaknervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslv 515
                  + l ei ++ + + r+lv +l kk ae l   lk+ g  v  +h + +   r++ ++d+++g+++++v  ++   GlD+P+v lv
  MMETSP1061-20121228|13184_1 393 NRLREILRKHKSKGRILVFALYKKEAERLEYNLKRDGFDVCSIHGNKHQAARTQALSDFKDGTCQMMVATDVAARGLDIPDVELV 477
                  5578999999*************************************************************************99 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0     0.005       2.1     264     368 ..     188     302 ..     178     304 .. 0.70
   2 !   20.4   0.0   9.2e-08   3.8e-05     482     575 ..     429     521 ..     409     528 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.005
    TIGR00643 264 dVGsGKTvVavlallaviesG....y....qvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGT....hallqe.kvefkeLalviiDEQhr 368
                  + GsGKT+   + +l+ +++     +    +++++ PT  LA Q    lre  + +g++   L g + k    +++ e+++G+i+ +v T    + l++e + ++++++  + DE  r
  MMETSP1061-20121228|13184_1 188 ETGSGKTLAFSIPALSSMAKNpvasKrrlpRMLVLSPTRELAMQVEVVLREYGAVVGMRSLCLYGGVPK---YTQTSELKKGNIDCLVATpgrlKDLINEgSCDLSKVQHLVLDEADR 302
                  67999999765544443332211111222257899*********9999999989889988889888865...4567899**********93333345555456788888888888766 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 9.2e-08
    TIGR00643 482 klnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsq.LHQLRGRvgRgekksyclLvaepkseeakkRLr 575
                   + v  +hg  +++ + ++l++F++++++++vaT v   G+d+P++ +++      + +    H + GR gR  k +  +   +p++++    L+
  MMETSP1061-20121228|13184_1 429 GFDVCSIHGNKHQAARTQALSDFKDGTCQMMVATDVAARGLDIPDVELVL-NYTFPLTIEDyVHRI-GRTGRAGKSGLSITFFQPSDKSHAGELQ 521
                  5667779**************************************98754.444455555424554.7778777777777777666666655555 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0         3   1.2e+03       6      17 ..     187     198 ..     186     226 .. 0.72
   2 !   21.1   0.0   7.4e-08     3e-05     128     321 ..     295     501 ..     286     525 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 3
    TIGR01587   6 APtGyGKteaal 17 
                  A tG+GKt a  
  MMETSP1061-20121228|13184_1 187 AETGSGKTLAFS 198
                  669****96543 PP

  == domain 2    score: 21.1 bits;  conditional E-value: 7.4e-08
    TIGR01587 128 liiDEvhayeeytkal.llallevlk..dvdvkillmsAtlpkllkeylekielveenealdlke..............ekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDi.svdvl..itelapidsLiQRlGRlaRygr 321
                  l++DE++ + +   +  +  ++      + + +  + sAt p  ++e + ++       ++   e               +  ++   ++++ ++ + ++ l ++l++ k+++++l+++   ++A  l  +lk ++ +  +  +H+    k+++ +  + l+++k+    ++vaT v+  +lDi +v+++  +t   +i+  + R+GR  R g+
  MMETSP1061-20121228|13184_1 295 LVLDEADRMLDMGFEEdVKYIISNCMpkEDGRQTAMFSATWPAIIQEIAMNYMTNP-VRLYVGFEgivgsngenniddsLSANKRVTQTIEVIEDRPRENRLREILRKHKSKGRILVFALYKKEAERLEYNLKRDGFD--VCSIHGN---KHQAAR-TQALSDFKDGTCQMMVATDVAARGLDIpDVELVlnYTFPLTIEDYVHRIGRTGRAGK 501
                  67777776555444333666665543336677778889999977666665543331.1222211234455578888877444445555667788899999****************************99***77776..999**95...777777.688***********************98888773357778899*********99776 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   2.4e-07   9.8e-05     202     288 ..     395     479 ..     375     483 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 2.4e-07
    TIGR01970 202 veealaee..sgsvLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviD 288
                  ++e+l+++   g +Lvf   ++e +r+e +L+    +   ++c ++G+ + +a+ +a++   +G  ++++at++a   l i+ v +v++
  MMETSP1061-20121228|13184_1 395 LREILRKHksKGRILVFALYKKEAERLEYNLK----RDGFDVCSIHGNKHQAARTQALSDFKDGTCQMMVATDVAARGLDIPDVELVLN 479
                  4455554411577****999999999888777....57899*********************************************986 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0064       2.6      24      91 ..     179     257 ..     169     274 .. 0.70
   2 !    7.7   0.0   0.00081      0.33     320     381 ..     436     497 ..     377     516 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0064
    TIGR04095  24 ngrGilkma.tGtGktlt....aLalvskl..aekikslvvvvvvPykhLveqWakeaekFg....lepilayesvsrW 91 
                  + r i+ +a tG+Gktl     aL+ ++k   a k +   ++v+ P ++L+ q    ++++g    ++ +  y++v ++
  MMETSP1061-20121228|13184_1 179 KKRDIVGIAeTGSGKTLAfsipALSSMAKNpvASKRRLPRMLVLSPTRELAMQVEVVLREYGavvgMRSLCLYGGVPKY 257
                  55666666659*****7544448888877676888888899***********988777776511115555555555555 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00081
    TIGR04095 320 taeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvL 381
                    +++++ R++ l +f++g+ q +va      G+D+P+++  +  +      +++ R GR  
  MMETSP1061-20121228|13184_1 436 HGNKHQAARTQALSDFKDGTCQMMVATDVAARGLDIPDVELVLNYTFPLTIEDYVHRIGRTG 497
                  55678899******************************987666666666667777777665 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.3       1.1   4.5e+02     158     199 ..      33      74 ..       7     150 .. 0.48
   2 ?   10.6   0.0   6.5e-05     0.027     686     735 ..     431     479 ..     391     515 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.1
    TIGR00580 158 eaaleakklisaerlsleveelvleakalslsevelesalsl 199
                  e+  +++++++a++l ++ ++  ++ k +sls+++++++   
  MMETSP1061-20121228|13184_1  33 EKLGDKENFKNAKKLITKNNKFCVDGKEVSLSKKTKRDNSDS 74 
                  333333333333344444444444444444444444433322 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 6.5e-05
    TIGR00580 686 riaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiie 735
                   ++ +Hg+ ++    + +++F++++ +++v+T +   G+dip++  ++++
  MMETSP1061-20121228|13184_1 431 DVCSIHGNKHQAARTQALSDFKDGTCQMMVATDVAARGLDIPDVE-LVLN 479
                  57889*************************************996.4445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.47
# Mc/sec: 1600.72
//
Query:       MMETSP1061-20121228|13201_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-221  733.0   5.5   1.6e-221  732.8   3.8    1.0  1  TIGR00485 EF-Tu: translation elongation factor Tu
    1.2e-64  216.2   7.0    1.7e-62  209.1   4.8    2.8  1  TIGR00483 EF-1_alpha: translation elongation factor EF-1, subunit alpha
      1e-52  177.5   4.2    2.8e-52  176.0   2.9    1.6  1  TIGR00475 selB: selenocysteine-specific translation elongation factor
    6.7e-37  125.5   7.0    1.2e-35  121.4   4.9    2.6  1  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit
    7.4e-32  108.1   1.2    9.1e-32  107.8   0.8    1.0  1  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
      4e-31  106.3   0.4    1.1e-30  104.8   0.3    1.7  1  TIGR02034 CysN: sulfate adenylyltransferase, large subunit
    3.4e-20   69.6   2.0    1.1e-19   67.8   0.2    2.0  2  TIGR00490 aEF-2: translation elongation factor aEF-2
    7.8e-20   68.9   4.0    3.5e-19   66.8   2.7    1.9  1  TIGR00487 IF-2: translation initiation factor IF-2
    4.9e-19   65.9   2.5    1.7e-17   60.9   1.7    2.0  1  TIGR01393 lepA: GTP-binding protein LepA
    5.2e-16   56.7   0.8    4.8e-15   53.6   0.5    2.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.1e-15   54.7   0.1    2.5e-15   53.5   0.0    1.6  2  TIGR00484 EF-G: translation elongation factor G
    9.7e-12   41.9   0.0    1.8e-11   41.0   0.0    1.4  1  TIGR00503 prfC: peptide chain release factor 3
    3.3e-10   36.8   0.3    7.5e-10   35.7   0.2    1.5  1  TIGR00491 aIF-2: translation initiation factor aIF-2


Domain annotation for each model (and alignments):
>> TIGR00485  EF-Tu: translation elongation factor Tu
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  732.8   3.8    5e-224  1.6e-221       1     393 [.       1     408 [.       1     409 [] 0.99

  Alignments for each domain:
  == domain 1    score: 732.8 bits;  conditional E-value: 5e-224
    TIGR00485   1 makekferskphvnvgtighvdhgkttltaaittvlakegkaaakkydeidkapeekargitintahveyetekrhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehillarqvgvpklvvflnkvdlvddeellelvelevrellseydfpgddvpivrgsalkale..........gdaeweekilelmeavdeyiptperevdkpfllaiedvfsitgrgtvvtgrvergevkvgeeveivglketkkttvtgvemfkklldeakagdnvgvllrgvkkeeiergqvlakpgsikphkkfeaevyvlkkeeggrhtpffsgyrpqfylrttdvtgkielpeg.....vemvlpgdnvkltvelispvaleeglrfaireggrtvgagvvskil 393
                  ma+ekfer+kphvn+gtighvdhgkttltaait++l+ eg++a+k+y +id apee+argitintahveyet++rhyahvdcpghadyvknmitgaaqmdgailvvsaadgpmpqtrehill++qvgvp +vvflnk+d+vddeellelvelevrells+ydfpgdd+pi  gsal+a+e          gd+ew +ki+ lm+avdeyiptper+++k+fl+aiedvfsitgrgtv+tgr+erg+vkvge veivg+ +t+ tt+tg+emf+k+lde+ agdnvg+llrgv++e+ierg+vl++pg+i+ph+ fe+evyvl+ +eggr tpff+gyrpqfy+rttdvtg+i+  ++     vemvlpgd++k+t eli pva+e+g+rfaireggrt+gagvvski+
  MMETSP1061-20121228|13201_1   1 MAREKFERTKPHVNIGTIGHVDHGKTTLTAAITATLSLEGGSAIKDYADIDGAPEERARGITINTAHVEYETQTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPDIVVFLNKQDQVDDEELLELVELEVRELLSAYDFPGDDIPICPGSALQAIEaitanpdlkrGDNEWVDKIFALMDAVDEYIPTPERDTEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGESVEIVGVGDTQTTTITGIEMFQKTLDEGFAGDNVGILLRGVTREDIERGMVLSQPGTITPHTVFESEVYVLTNDEGGRSTPFFTGYRPQFYVRTTDVTGAITAFTAddgsaVEMVLPGDRIKMTAELIYPVAIEDGMRFAIREGGRTIGAGVVSKII 408
                  89**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************9988777888*********************************************8 PP

>> TIGR00483  EF-1_alpha: translation elongation factor EF-1, subunit alpha
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.1   4.8   5.5e-65   1.7e-62       3     420 ..       8     405 ..       6     409 .] 0.80

  Alignments for each domain:
  == domain 1    score: 209.1 bits;  conditional E-value: 5.5e-65
    TIGR00483   3 kekehlnvafighvdsgkstlvgrllyeagaiderlleklkkeaeekgkasfefayvldklkeerergvtidvahkkfetdkyevtivdapghrdfiknmitgasqadaavlvvavddgelevqpqtrehvllartlgikqlivainkmdsvnydeekfeelkkevsellkkvgykpdevefipvsaykgdnvv......kksenapwykgktllealdk.leapekpvdkplripiqdvysitgvgtvpvgrvetgvlkkgekvvfepag..vsgevksiemhheqieqaepgdnigfnvrgvskkdirrgdvagdadn.ppkvakeftaqivvlqhp...gaitvgytpvldahtaqvacrfvellkkldprtgkvkeenpkflktgdaaivklkptkplviekvkeipklgrfairdmgqtvaagvvi 420
                  + k+h+n+  ighvd+gk+tl+  +          +l        e g a  ++a  +d   eer rg+ti+ ah  +et+  + + vd+pgh d++knmitga+q d a+lvv++ dg    +pqtreh+ll++ +g+ +++v +nk d+v+ dee  e +  ev ell    +  d++++ p sa++  + +      k+ +n    k  +l++a+d+ + +pe+ ++k + + i+dv+sitg gtv  gr+e gv+k+ge v +   g   ++ +  iem  ++++++  gdn+g+ +rgv+++di rg v  ++    p+++ e +  ++  +     +   +gy p + + t++v+  ++ +        g       +++  gd   +  +   p+ ie         rfair+ g+t++agvv 
  MMETSP1061-20121228|13201_1   8 RTKPHVNIGTIGHVDHGKTTLTAAI-------TA-TLS------LEGGSAIKDYA-DIDGAPEERARGITINTAHVEYETQTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG---PMPQTREHILLSKQVGVPDIVVFLNKQDQVD-DEELLELVELEVRELLSAYDFPGDDIPICPGSALQAIEAItanpdlKRGDNEWVDKIFALMDAVDEyIPTPERDTEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGESVEIVGVGdtQTTTITGIEMFQKTLDEGFAGDNVGILLRGVTREDIERGMVLSQPGTiTPHTVFESEVYVLTNDEGgrsTPFFTGYRPQFYVRTTDVTGAITAFTAD----DGSAV----EMVLPGDRIKMTAELIYPVAIEDG------MRFAIREGGRTIGAGVVS 405
                  679*****************98654.......32.222......34455566777.579***********************************************************9...99****************************7.77888889999*********************999865551222113444444456789******84688****************************************99888873246889**************************************998877777655444444444441114455799999999999888766554432....22222....344456655555555566666542......367777777777777765 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   2.9   8.8e-55   2.8e-52       1     266 [.      13     312 ..      13     324 .. 0.85

  Alignments for each domain:
  == domain 1    score: 176.0 bits;  conditional E-value: 8.8e-55
    TIGR00475   1 viiataGHvDHGKttLlkaltgid.............adrlPeEkKRGltiDlGyaylpledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeee.vkevEeelkeileeeeflkn.......akivkvsAktG.....qGieeLkkelknLleslda......kdkqkplrlaiDraFkvKGaGtvvtGtafsGevkvgDelvlepin..kkvrvkalqaqnqsvekavAGqRialnladvdkeklkRGllilkpeepkkr 266
                  v+i+t GHvDHGKttL  a+t +               d  PeE+ RG+ti+  +  ++ + +    +D PGH  ++kn+++g + +d+a+Lvv a +G+++qt+EH+++ k++g++ ++v l+K D+vd+ee ++ vE e++e+l  + f  +       + +  + A t      +G +e  +++  L++ +d       +d +k++ +ai+ +F++ G Gtv tG + +G vkvg+++ + +++  ++  +  ++ ++++ +++ AG+ +++ l +v +e+++RG++  +p   + +
  MMETSP1061-20121228|13201_1  13 VNIGTIGHVDHGKTTLTAAITATLsleggsaikdyadIDGAPEERARGITINTAHVEYETQTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPDIVVFLNKQDQVDDEElLELVELEVRELLSAYDFPGDdipicpgSALQAIEAITAnpdlkRGDNEWVDKIFALMDAVDEyiptpeRDTEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGESVEIVGVGdtQTTTITGIEMFQKTLDEGFAGDNVGILLRGVTREDIERGMVLSQPGTITPH 312
                  689******************98778888888888777889****************************************************************************************987626889***********99633111111123333333332222227888888999999999985334332589*****************************************9445689***********************************999888766655 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.4   4.9   3.7e-38   1.2e-35       3     319 ..      10     312 ..       8     393 .. 0.84

  Alignments for each domain:
  == domain 1    score: 121.4 bits;  conditional E-value: 3.7e-38
    TIGR03680   3 qpevniglvGhvDhGkttlvkaltGvwtdthseelkrgisiklGyadaeikkceeceepeaytteekceecgsetellrkvsfvDaPGhetLmatmlsGaalmdgalLviaaneevPqpqtkehlvaleiigiknivivqnkidlvskekalenye.eikefvkgtv..aenapiiPvsalkkv.....n.............idvllealekeiptperdldkdalllvarsfdvnkPGteieklkGGviGGslvqGklkvgdeieirPGikvekegkteyepiltevtsleagkkkveeakPgGlvavgtkLDPaltkaDalaGqvvgkpgklppv 319
                  +p+vnig++GhvDhGkttl+ a+t       s     g +ik  yad+     e+++    +t ++   + + e  ++r+ + vD+PGh   +  m++Gaa mdga+Lv++a++  P+pqt+eh+   + +g+ +iv+  nk d v+ e+ le  e e++e++  +    ++ pi P sal+ +     n             i +l++a++++iptperd++k +l+ +   f +           G v  G + +G++kvg+ +ei  G+  ++         +t++t +e+ +k+++e   g  v++       +t++D   G v+++pg+++p 
  MMETSP1061-20121228|13201_1  10 KPHVNIGTIGHVDHGKTTLTAAITATL----SL--EGGSAIK-DYADIDGAPEERAR---GITINTA--HVEYE-TQTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLSKQVGVPDIVVFLNKQDQVDDEELLELVElEVRELLSAYDfpGDDIPICPGSALQAIeaitaNpdlkrgdnewvdkIFALMDAVDEYIPTPERDTEKTFLMAIEDVFSITGR--------GTVATGRIERGVVKVGESVEIV-GVGDTQ---------TTTITGIEMFQKTLDEGFAGDNVGIL---LRGVTREDIERGMVLSQPGTITPH 312
                  799*******************98654....43..4566666.7*998765555544...4444442..23333.467999*******************************986.8************************************98769*****98754589*********99763334423333444444444679*****************************9865........56889****************7.776666.........799*****************999995...4589***************99875 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.8   0.8   2.9e-34   9.1e-32       3     269 ..      14     284 ..      12     314 .. 0.80

  Alignments for each domain:
  == domain 1    score: 107.8 bits;  conditional E-value: 2.9e-34
    TIGR01394   3 niaiiahvDhGkttlvDklLkqsgvlrekeeveerv.mDsndlererGitilakntavkykdtkinivDtPGhaDfGGevervlsmvdgvlllvDaseGplpqtrfvlkkalelglkpivv.inkiDrpdar..peevvdevfdLfvelgaddeqldfpvvyasakeGvasle........eedesedleplfdailehvpaPkadkdeplqllvttldydeylGriaigrverGkvkkgqqvallkkdgkiekariskllafeglerveideaeaGdi 269
                  ni  i hvDhGkttl  ++   +  l+  +++++ + +D    er rGiti +  +  + +  +   vD PGhaD+  ++      +dg++l+v a++Gp+pqtr  +  + ++g   ivv +nk D+ d +   e v  ev +L+ + +   +  d+p+  +sa + +   +         ++  +++  l+da+ e++p+P+ d+++++ + +  + + +  G +a+gr+erG+vk g++v+++   g ++++ i+ + +f++    ++de  aGd 
  MMETSP1061-20121228|13201_1  14 NIGTIGHVDHGKTTLTAAITA-TLSLEGGSAIKDYAdIDGAPEERARGITINTAHVEYETQTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPDIVVfLNKQDQVDDEelLELVELEVRELLSAYDFPGD--DIPICPGSALQAIEAITanpdlkrgDNEWVDKIFALMDAVDEYIPTPERDTEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGESVEIVGV-GDTQTTTITGIEMFQK----TLDEGFAGDN 284
                  999************988765.5567777777775549*************9999999999999****************************************9766656666766555439****976542257788899****99999887..5677778887777666655666544555667788899***************************************************9975.4455666666655543....4555555555 PP

>> TIGR02034  CysN: sulfate adenylyltransferase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.8   0.3   3.5e-33   1.1e-30      55     316 ..      50     322 ..      14     356 .. 0.84

  Alignments for each domain:
  == domain 1    score: 104.8 bits;  conditional E-value: 3.5e-33
    TIGR02034  55 vdGlqaereqgitidvayryfstdkrkfivadtPGheqytrnmatgastadlavllvdarkGvleqtrrhsiiasllGikhvvlavnkidlvdydeevfeeikkdylalaekl..gvsdvtviPlsalkG.dnvve....ksesmpWyeGp.tllevlet.veveesaeeeelrlpvqyvnrpnldfrGyaGtiasGsvkvGdevvvlpsg..resrvarivtfdgelekaeaGeavtlvle..deidisrGdllaaadeapevadqfaaelvwl 316
                  +dG   er +giti+ a+  ++t+ r++   d+PGh  y +nm+tga+ +d a+l+v a  G + qtr h +++  +G+  +v+ +nk d vd dee +e ++ + ++l ++      d+ + P sal+  + ++     k+   +W +    l++ ++  + + e+ +e+ + + ++ v          +G i  G vkvG++v ++  g  +++ ++ i  f++ l++  aG+ v + l+     di+rG +l++  +++   + f+ e+  l
  MMETSP1061-20121228|13201_1  50 IDGAPEERARGITINTAHVEYETQTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPDIVVFLNKQDQVD-DEELLELVELEVRELLSAYdfPGDDIPICPGSALQAiEAITAnpdlKRGDNEWVDKIfALMDAVDEyIPTPERDTEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGESVEIVGVGdtQTTTITGIEMFQKTLDEGFAGDNVGILLRgvTREDIERGMVLSQPGTIT-PHTVFESEVYVL 322
                  79******************************************************************************************9.67899*******9997776225589*********974555541222566789*9875268888754277778889999999**999987776666789*************998765227899*********************999833467******999987743.344555555444 PP

>> TIGR00490  aEF-2: translation elongation factor aEF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.2   3.5e-22   1.1e-19      13     163 ..       6     153 ..       2     160 .. 0.84
   2 ?    0.9   0.1     0.062        20     294     332 ..     225     263 ..     214     289 .. 0.72

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 3.5e-22
    TIGR00490  13 mekpefirnigivahidhgkttlsdnllagagmiseelageqlfldfdeqeqergitidaanvsmvheyegneylinlidtpghvdfggdvtramravdgaivvvcavegvmpqtetvlrqalkenv.kpvlfinkvdrlinelkltaeelq 163
                  +e+ +   nig + h+dhgkttl+  + a   +       +   +d   +e++rgiti++a v    eye +      +d pgh d+  ++      +dgai+vv+a +g mpqt   +  + +  v   v+f+nk d++ +e  l+  el+
  MMETSP1061-20121228|13201_1   6 FERTKPHVNIGTIGHVDHGKTTLTAAITATLSLEGGSAIKDYADIDGAPEERARGITINTAHV----EYETQTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVpDIVVFLNKQDQVDDEELLELVELE 153
                  55666677*******************9999998888888888889999************98....79****999**************9999999******************66555555555525699******99888666655555 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.062
    TIGR00490 294 itkivvdkhagevavgrlysgaikkgsevylvdskakar 332
                  i ++      g va+gr+  g +k g+ v +v+  + + 
  MMETSP1061-20121228|13201_1 225 IEDVFSITGRGTVATGRIERGVVKVGESVEIVGVGDTQT 263
                  55666666779***************9999987544433 PP

>> TIGR00487  IF-2: translation initiation factor IF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   2.7   1.1e-21   3.5e-19      86     294 ..      10     253 ..       2     264 .. 0.71

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 1.1e-21
    TIGR00487  86 rpPv.vtimGhvDhGktsLLdsirkt.............kva...egeaGGitqhiGayqvekedkk.kitflDtPGheaftsmrarGakvtDivvlvvaadDGvkpqtieaiehakaanvP.iivainkiDkpean..pDrvkqelseyglvpeewGGeti.fvpvsalkg...........kgideLldaiL.lqseveelkanknkqakgvvi...eakld.kgrGpvatvlvqeGtLkvGDiv 294
                  +p v +  +GhvDhGkt+L   i  t             ++    e+ a Git  i   +ve+e +  + + +D PGh+ + +    Ga   D ++lvv+a DG +pqt e i  +k+ +vP i+v++nk D+ + +   + v+ e+ e+ l + ++ G+ i + p sal+            +g +e +d+i+ l+  v e+   +++ ++ + +   e   +  grG+vat  +++G +kvG++v
  MMETSP1061-20121228|13201_1  10 KPHVnIGTIGHVDHGKTTLTAAITATlsleggsaikdyaDIDgapEERARGIT--INTAHVEYETQTrHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPdIVVFLNKQDQVDDEelLELVELEVREL-LSAYDFPGDDIpICPGSALQAieaitanpdlkRGDNEWVDKIFaLMDAVDEYIPTPERDTEKTFLmaiEDVFSiTGRGTVATGRIERGVVKVGESV 253
                  333324458**********9888765222222211111112111134467888..6667787776543799************999************************************8999******976652256677777766.56778988876366899987522222222222456899***984677899****9999988765411144443479*****************998 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   1.7   5.2e-20   1.7e-17       5     262 ..      14     293 ..      10     308 .. 0.79

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 5.2e-20
    TIGR01393   5 nfsiiahidhGkstladrllektkavserelkeql.ldsldlererGitikaqavrlkykakdgeeyvlnlidtPGhvdfsyevsrslaaceGalllvdaaqGveaqtlanvylalekdl.eiiPvinkidlPsad..vervkkeieevi..............G..ldaeeailvsa..ktGig.....ieelleaivkkvpaPkgdkeaplkalifdsvydayrGvvvyvrvveGkikkgdkikllstgkeyeveevgvltpklvkeeelkaGevGyliagik 262
                  n+  i h+dhGk+tl+  +  + +      +k+   +d    er rGiti +  v  +y+++   +y    +d PGh+d+  ++    a  +Ga+l+v aa G   qt  ++ l+ +  + +i+  +nk d    +   e v+ e++e++              G  l+a eai++    k G +     i  l++a+ + +p+P+ d+e+     i d +  + rG v+  r+  G +k+g+ ++++  g + + + +g+ +++++ +e +   +vG+l  g+ 
  MMETSP1061-20121228|13201_1  14 NIGTIGHVDHGKTTLTAAITATLSLEGGSAIKDYAdIDGAPEERARGITINTAHV--EYETQ-TRHY--AHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVpDIVVFLNKQDQVDDEelLELVELEVRELLsaydfpgddipicpGsaLQAIEAITANPdlKRGDNewvdkIFALMDAVDEYIPTPERDTEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGESVEIVGVGDTQTTTITGIEMFQKTLDEGFAGDNVGILLRGVT 293
                  8899************98877666555556665433788899********88765..67433.3444..579***************************************999998887579999****987655336889999999883333332222222211133444444432447776555223556789999*************9999****999**********************************9*****9999999999999***999885 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.5   1.5e-17   4.8e-15       4     130 ..      13     148 ..      10     162 .. 0.78

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 1.5e-17
    TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskp................gvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvp.iilvvnKiDlkd..dlkt 130
                  ++i+ +Ghvd+GK+tL+  ++ +   +  s +                g+t +++   +e++ +t     +D +G++d+       v++    +  +d++ilv+++ +g+++qt+e i   k+ gvp i++++nK+D++d  +l++
  MMETSP1061-20121228|13201_1  13 VNIGTIGHVDHGKTTLTAAITATLSLEGGS-AikdyadidgapeerarGITINTAH--VEYETQTRHYAHVDCPGHADY-------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPdIVVFLNKQDQVDdeELLE 148
                  79***************9998876433322.1233334666666665566666555..56666668999**********.......************************************9***9788999*******554444 PP

>> TIGR00484  EF-G: translation elongation factor G
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.5   0.0   7.8e-18   2.5e-15      10     143 ..      12     144 ..       1     171 [. 0.85
   2 ?   -2.3   0.0      0.61   1.9e+02     268     282 ..     200     214 ..     197     223 .. 0.84

  Alignments for each domain:
  == domain 1    score: 53.5 bits;  conditional E-value: 7.8e-18
    TIGR00484  10 lrniGisahidaGktttterilfytgkihkigevhdGaatmdwmeqekerGititsaattvewkdfrinlidtPGhvdftveverslrvldGavavldavaGvepqsetvwrqakkyevPri.vfvnkmdkiGan 143
                    niG   h+d Gktt+t  i      + + g      a +d    e+ rGiti +a  + e +  +   +d PGh d+  ++      +dGa++v+ a  G  pq+       k+ +vP i vf+nk d++  +
  MMETSP1061-20121228|13201_1  12 HVNIGTIGHVDHGKTTLTAAITA--TLSLEGGSAIKDYADIDGAPEERARGITINTAHVEYETQTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPDIvVFLNKQDQVDDE 144
                  56****************99964..445555666667899**********************9*9*******************************************************9736******99765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.61
    TIGR00484 268 qllldavvdylPsPv 282
                   +l+dav +y+P+P 
  MMETSP1061-20121228|13201_1 200 FALMDAVDEYIPTPE 214
                  579**********96 PP

>> TIGR00503  prfC: peptide chain release factor 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   5.7e-14   1.8e-11      13     161 ..      14     155 ..       4     179 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 5.7e-14
    TIGR00503  13 tfaiishpdaGkttltekvllyGnaiqeaGavka.rgsqrsaksdwmemekqrGisittsvlqfdyrdklvnlldtpGhedfsedtyrtltavdsalmvidaakGveertrkllevtrlrdlp.iltflnkldrdirdplelldevenelk 161
                  ++  i h d Gkttlt  +         + ++ +    +  a  d    e+ rGi+i t+ ++++ + +    +d pGh d+ ++     + +d a++v+ aa G   +tr  + +++   +p i+ flnk d+   d  ell+ ve e++
  MMETSP1061-20121228|13201_1  14 NIGTIGHVDHGKTTLTAAI-------TATLSLEGgSAIKDYADIDGAPEERARGITINTAHVEYETQTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPdIVVFLNKQDQ--VDDEELLELVELEVR 155
                  667899*********9754.......4444444303345679999999****************************************************************999999999887999****986..444555555555444 PP

>> TIGR00491  aIF-2: translation initiation factor aIF-2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.2   2.4e-12   7.5e-10       9     135 ..      17     142 ..      10     149 .. 0.87

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2.4e-12
    TIGR00491   9 vlGhvdhGkttlldkirktrvakreaGg.itqhiGaseiPidvikrlcgdllkklkidlkiPGllvidtPGheaftslrkrGGaladiailvvdineGfkpqtveavnilrqlktP.fvvaankidrip 135
                   +GhvdhGkttl   i  t   + e G  i         P +  + ++ +   +++ + +      +d PGh  + +    G a  d ailvv   +G  pqt e + + +q+ +P  vv  nk d+++
  MMETSP1061-20121228|13201_1  17 TIGHVDHGKTTLTAAITAT--LSLEGGSaIKDYADIDGAPEERARGITINTA-HVEYETQTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPdIVVFLNKQDQVD 142
                  68************99655..5677776255566677899999999999987.7899999999*****************************************************4456789999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.31
# Mc/sec: 1741.40
//
Query:       MMETSP1061-20121228|13230_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 863.93
//
Query:       MMETSP1061-20121228|13228_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1567.37
//
Query:       MMETSP1061-20121228|13247_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-11   42.3   0.0    3.4e-11   41.3   0.0    1.4  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    1.7e-08   31.9   0.0      3e-08   31.1   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    5.2e-08   30.3   0.0      1e-07   29.3   0.0    1.4  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    9.4e-07   26.4   0.2    3.4e-06   24.6   0.0    1.8  2  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    4.8e-06   24.1   0.0    2.8e-05   21.6   0.0    2.0  2  TIGR02081 metW: methionine biosynthesis protein MetW
    6.3e-06   23.6   0.0    1.3e-05   22.6   0.0    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00012   20.2   0.0    0.00063   17.9   0.0    2.2  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0016   15.8   0.0     0.0039   14.5   0.0    1.6  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0067   13.6   0.0     0.0096   13.1   0.0    1.3  1  TIGR00478 tly: hemolysin TlyA family protein
     0.0074   13.6   0.0      0.014   12.6   0.0    1.4  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   8.2e-14   3.4e-11      19     135 ..      71     194 ..      64     202 .. 0.89

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 8.2e-14
    TIGR02072  19 iakkLlellkekr.kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.......nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafstf 135
                   +++Ll  l+ ++  ++++ vLd+G+G G ++ +++ rf  + ++   is+e+ ++  ++ +        + ++c+  e lp++++sf  i+S+ +l  + d+s++++el+rvlkpgG ++f+++
  MMETSP1061-20121228|13247_1  71 TNERLLTCLDWTQpVTKDSVVLDLGSGHGGISHEIAGRFGCK-VMGANISPEQNNMNMEEAEklgvgdlVDVTLCNFNEGLPFADNSFTHIISCEVLCHAADKSTLFEELKRVLKPGGAFVFTDI 194
                  67899999999888778899*******************999.888889998888776666669999987778888899*******************************************986 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   7.3e-11     3e-08      48     154 ..      86     194 ..      61     197 .. 0.85

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 7.3e-11
    TIGR01983  48 leglkvlDvGcGgGllsesla.rlgaevtgiDlseelievAklhakkdplk.kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilflsti 154
                   ++  vlD+G+G G +s  +a r g++v+g ++s e+ ++  + a+k ++   ++ +l++ +e    +++sf  +++ Evl H ad +++ +e+ ++lkpgg+ +++ i
  MMETSP1061-20121228|13247_1  86 TKDSVVLDLGSGHGGISHEIAgRFGCKVMGANISPEQNNMNMEEAEKLGVGdLVDVTLCNFNEGLPFADNSFTHIISCEVLCHAADKSTLFEELKRVLKPGGAFVFTDI 194
                  457789******777776665499***********999999999999999878999999999888888999********************************999866 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.5e-10     1e-07      38     146 ..      86     196 ..      75     219 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.5e-10
    TIGR01934  38 ekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.eeanve.fieadaeeLpfednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilefsk 146
                  +k++ vlD+ +G G ++ e+a + + kv+g+ +s+e  ++  + a++      v+  +++  e Lpf+dnsf  +     l   +d++   +el RVlkpgg +v  +++ 
  MMETSP1061-20121228|13247_1  86 TKDSVVLDLGSGHGGISHEIAGRFGCKVMGANISPEQNNMNMEEAEKLgVGDLVDvTLCNFNEGLPFADNSFTHIISCEVLCHAADKSTLFEELKRVLKPGGAFVFTDIMG 196
                  478899****************************998888888887776544555145677899********9988888899**********************9988775 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   8.3e-09   3.4e-06      44     150 ..      86     192 ..      79     198 .. 0.81
   2 ?   -1.1   0.0      0.59   2.4e+02      10      49 ..     251     291 ..     235     299 .. 0.68

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 8.3e-09
    TIGR02752  44 qkgkkaldvccgtadwaialaeavgkegevkgldfs...enmlsvgkekvkdaklenvelvhgnamelpyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvcl 150
                   k + +ld+  g +  +  +a   g   +v+g ++s   +nm     ek+   +l +v+l   n   lp++dnsf ++     l    d  ++++e++rv+kpgg  v  
  MMETSP1061-20121228|13247_1  86 TKDSVVLDLGSGHGGISHEIAGRFGC--KVMGANISpeqNNMNMEEAEKLGVGDLVDVTLCNFNE-GLPFADNSFTHIISCEVLCHAADKSTLFEELKRVLKPGGAFVFT 192
                  56667788888888777777766664..6888888744345666667888889999999998885.7**************************************98865 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.59
    TIGR02752  10 vfekiykkydrm.nsvisfkrhkkwrkdtmkrmnvqkgkka 49 
                  + ++i k+ d m +   s +   kw +    r+++qk +k+
  MMETSP1061-20121228|13247_1 251 MVDQIVKHKDAMlDEGCSEQYLAKWMESLTSRVSIQKEHKV 291
                  45667777776623456666667777777777777776665 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   6.9e-08   2.8e-05      11     102 ..      85     183 ..      78     188 .. 0.82
   2 ?   -0.4   0.0      0.37   1.5e+02       6      31 ..     251     276 ..     248     295 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 6.9e-08
    TIGR02081  11 ipagsrvLDlGcGdGeLLallrdekqvegaGleid..ee..nvlacvarG....veviqqdldegLeafedksfDvvvlsqtlqavrnteeiLdellRvg 102
                  + + s vLDlG+G+G + + ++ +  ++ +G +i+  ++  n+ ++ + G    v+v   + +egL+ f+d+sf  ++  + l      +++ +el Rv 
  MMETSP1061-20121228|13247_1  85 VTKDSVVLDLGSGHGGISHEIAGRFGCKVMGANISpeQNnmNMEEAEKLGvgdlVDVTLCNFNEGLP-FADNSFTHIISCEVLCHAADKSTLFEELKRVL 183
                  6789********************999999988762233114556666673344589999******7.9**************************99995 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.37
    TIGR02081   6 ailelipagsrvLDlGcGdGeLLall 31 
                  ++ ++++++  +LD Gc +  L + +
  MMETSP1061-20121228|13247_1 251 MVDQIVKHKDAMLDEGCSEQYLAKWM 276
                  567889999999*****997776554 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.1e-08   1.3e-05      32     135 ..      63     173 ..      57     192 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 3.1e-08
    TIGR02021  32 tvreGreamrekllewlpkd..slkGkkvlDAGCGtGllsielAkr.GaivkavDiseklvelarkraekedeaenveFevndles....legkfDavvalDvlihYpaed 135
                  tv e  +a+ e+ll+ l  +    k + vlD G G G +s e+A r G +v++++is++  ++  ++aek  + + v+    ++++    +++ f ++++ +vl h +++ 
  MMETSP1061-20121228|13247_1  63 TVYEASKATNERLLTCLDWTqpVTKDSVVLDLGSGHGGISHEIAGRfGCKVMGANISPEQNNMNMEEAEKLGVGDLVDVTLCNFNEglpfADNSFTHIISCEVLCHAADKS 173
                  6777788888888888877654578899****************877***********************99988887766554432222779************987764 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.4   9.9e+02      70     102 ..      21      53 ..       9      65 .. 0.63
   2 !   17.9   0.0   1.5e-06   0.00063      18     121 ..      86     192 ..      74     195 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.4
    TIGR02469  70 nieivegdapkaeedsleeadavfvgGsgkklk 102
                  + e+ ++ +++ +e+  + + + ++gG+g  ++
  MMETSP1061-20121228|13247_1  21 ESEVADKVVEQYDEKHARVFYKYVMGGGGFDIH 53 
                  444444434455555566777778888887666 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.5e-06
    TIGR02469  18 kkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnie.ivegdap...kaeedsleeadavfvgGsgkklkeileaverrlrpggrivln 121
                   k++v+lD G+G G ++ e+a +++  +v++ + ++e+ ++ +e ++++gv + + +   +++     +++s + +    v    +    ++e+++r+l+pgg+ v +
  MMETSP1061-20121228|13247_1  86 TKDSVVLDLGSGHGGISHEIAGRFGC-KVMGANISPEQNNMNMEEAEKLGVGDLVdVTLCNFNeglPFADNSFTHIISCEVLCHAADKSTLFEELKRVLKPGGAFVFT 192
                  4567*******************985.9*********************99876513333344433233333333333334444445567888888888888887765 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   9.5e-06    0.0039      87     162 ..      86     162 ..      62     164 .. 0.84
   2 ?   -3.1   0.0       2.2   9.1e+02     200     217 ..     174     191 ..     169     198 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 9.5e-06
    TIGR03534  87 keklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdlleal.eekgkfdlivs 162
                  ++   vlDlg+G G I   +a +   +kv++++is+e  ++  + a++lg+ + v++   ++ e l  ++++f  i+s
  MMETSP1061-20121228|13247_1  86 TKDSVVLDLGSGHGGISHEIAGR-FGCKVMGANISPEQNNMNMEEAEKLGVGDlVDVTLCNFNEGLpFADNSFTHIIS 162
                  33458****************98.69**************************99999999998888667777777776 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.2
    TIGR03534 200 riaeeaakllkeggllll 217
                  +++ee++++lk+gg +++
  MMETSP1061-20121228|13247_1 174 TLFEELKRVLKPGGAFVF 191
                  68899999****999876 PP

>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.3e-05    0.0096      74     161 ..      86     169 ..      68     218 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.3e-05
    TIGR00478  74 vknkivlDvGsStGGFtdcalqkGAkkvygvdvgknqleekLrqdeRvkvlertniryvtpadivPelavvDvSfislikileellsl 161
                   k+ +vlD+Gs  GG ++ +  +   kv g +++ +q + ++ + e++ v    ++ +vt  ++   l   D Sf   i  +e+l + 
  MMETSP1061-20121228|13247_1  86 TKDSVVLDLGSGHGGISHEIAGRFGCKVMGANISPEQNNMNMEEAEKLGVG---DLVDVTLCNFNEGLPFADNSFT-HIISCEVLCHA 169
                  699**************9998888899*******************96665...5555566666666778888887.33334555444 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   3.5e-05     0.014     148     263 ..      77     197 ..      69     218 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.5e-05
    TIGR00406 148 lClellesldlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklen...leqkiegka.DvivaNilAevi..kellsqivrLvkegGllilSGilee 263
                   Cl++ +  + kd +v+D+G+G G +s  ++     kv++ +i p   +   + +e+ +v dl+ v+l n        ++ +  +i + +l        l  ++ r++k+gG ++   i++ 
  MMETSP1061-20121228|13247_1  77 TCLDWTQ-PVTKDSVVLDLGSGHGGISHEIAGRFGCKVMGANISPEQNNMNMEEAEKLGVGDLVDVTLCNfneGLPFADNSFtHIISCEVLCHAAdkSTLFEELKRVLKPGGAFVFTDIMGA 197
                  5999976.5789************9999988888899****************************99988543222345555155568999766522579999***********99999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1495.88
//
Query:       MMETSP1061-20121228|13298_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-22   77.8   0.0    1.9e-22   77.6   0.0    1.1  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.3e-06   25.5   0.0    1.8e-06   25.0   0.0    1.2  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    0.00072   16.8   0.1     0.0026   15.0   0.0    1.7  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0014   15.5   0.1       0.27    7.9   0.0    2.0  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
     0.0058   13.9   0.1       0.33    8.1   0.0    2.1  2  TIGR00436 era: GTP-binding protein Era
  ------ inclusion threshold ------
      0.022   11.7   0.1      0.036   11.0   0.0    1.3  1  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
      0.035   10.9   0.0        1.9    5.3   0.0    2.0  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.6   0.0   3.2e-25   1.9e-22       2     159 ..      16     172 ..      15     174 .] 0.83

  Alignments for each domain:
  == domain 1    score: 77.6 bits;  conditional E-value: 3.2e-25
    TIGR00231   2 keikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvksl...faklnaep..iielsaetgknidklf 159
                  ke++i+i+G +++GK+t+l++l  ++   +++ p+++++++t   ++++  +k++++D++Gq   ++ +r y+++++++++vvd +   +++  ++  +     +e + k++ +++++nK+D+k+++  ++ s+   +++  + +  i e+sa +gk++ + f
  MMETSP1061-20121228|13298_1  16 KEVRILILGLDNAGKTTILYRLQNESDEAVQTIPTIGFNVET--LQYKN--IKFQVWDLGGQTSIRPYWRCYYPNTDAIIFVVDSADS-ERMPVAK-GELAAMLEEDELKESILLVFANKQDQKGAMNAQQISDalgLPEIRNRQwsIQETSALKGKGLFEGF 172
                  789**********************999999999******99..6****..88***********************************.9999999.8888888888889***************55555544300033333333247778888888876665 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   3.1e-09   1.8e-06       2     137 ..      19     149 ..      18     168 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 3.1e-09
    TIGR03594   2 vvaivGrpNVGKStLfNrlvkkrkAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdare..glteeDeeiaklLrksk..kpvilv.vNKvdnkkeeaeaaefyslGlge 137
                   + i+G  N GK t++ rl ++ +  v+  p +    + ++ ++k+ +f++ D gG         ++ir   +    + d+i+fvvd  +  ++  +  e+a++L++ +  + ++lv +NK d+k + ++ +   +lGl e
  MMETSP1061-20121228|13298_1  19 RILILGLDNAGKTTILYRLQNESDEAVQTIPTIG--FNVETLQYKNIKFQVWDLGGQ--------TSIRPYWRCYYPNTDAIIFVVDSADseRMPVAKGELAAMLEEDElkESILLVfANKQDQKGAMNAQQISDALGLPE 149
                  589****************************775..7889999*************7........6789999999************875225667899******98766455655548*****98777766667777766 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.5e-06    0.0026     116     165 ..      15      65 ..       6      74 .. 0.83
   2 ?   -0.5   0.0      0.24   1.4e+02      47      71 ..     119     143 ..      83     164 .. 0.48

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.5e-06
    TIGR03596 116 kkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTksqqwiklsk.el 165
                  +k++r+l++G+ N GK t++ rl +++   v   p +  + +++++++ ++
  MMETSP1061-20121228|13298_1  15 SKEVRILILGLDNAGKTTILYRLQNESDEAVQTIPTIGFNVETLQYKNiKF 65 
                  689************************999999999887777777755445 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.24
    TIGR03596  47 knkprlivlnkaDladpektkkwlk 71 
                  k+   l+  nk+D     + +++ +
  MMETSP1061-20121228|13298_1 119 KESILLVFANKQDQKGAMNAQQISD 143
                  2222222335555544444444444 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0019       1.1     190     213 ..      18      41 ..      14      64 .. 0.84
   2 !    7.9   0.0   0.00046      0.27     269     322 ..      87     141 ..      84     166 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0019
    TIGR03156 190 ptvalvGYTNaGKstllnaltkae 213
                  +++ + G  NaGK+t+l +l +++
  MMETSP1061-20121228|13298_1  18 VRILILGLDNAGKTTILYRLQNES 41 
                  578899*************99864 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.00046
    TIGR03156 269 adlllhvvDasdeeaeeqie.aveevLeelgaeeipvllvlNkidkleeeeleel 322
                  +d ++ vvD++d+e++  ++ + +++Lee +++e   l+  Nk d+    ++++ 
  MMETSP1061-20121228|13298_1  87 TDAIIFVVDSADSERMPVAKgELAAMLEEDELKESILLVFANKQDQKGAMNAQQI 141
                  799********9988765543899**********9999999****9986666655 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00057      0.33       2      27 ..      19      44 ..      18      62 .. 0.84
   2 ?    3.9   0.0      0.01       6.1      81     150 ..      88     166 ..      85     170 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00057
    TIGR00436  2 fvailGrpnvGKSTLlNkllgqkisi 27
                 ++ ilG  n+GK T+l +l ++    
  MMETSP1061-20121228|13298_1 19 RILILGLDNAGKTTILYRLQNESDEA 44
                 688***************99886655 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.01
    TIGR00436  81 dlilfvvdsdeknke...dellleklqklkap...vvlalnkldnk..ekdkllelidkeasllefk.eiveisalkge 150
                  d i+fvvds +++        l   l + + +    ++  nk+d+k   ++++++    +  + + + +i e+salkg+
  MMETSP1061-20121228|13298_1  88 DAIIFVVDSADSERMpvaKGELAAMLEEDELKesiLLVFANKQDQKgaMNAQQISDALGLPEIRNRQwSIQETSALKGK 166
                  889****998876552223445555655444400134456777777555555566555555555555688888888876 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   6.1e-05     0.036     155     203 ..      17      65 ..       4      73 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 6.1e-05
    TIGR03597 155 kkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieipl 203
                  +  ++++G  N GK +++ +l +++++  + i t  f   Tl+  +i++
  MMETSP1061-20121228|13298_1  17 EVRILILGLDNAGKTTILYRLQNESDEAVQTIPTIGFNVETLQYKNIKF 65 
                  467899*******************999999****************98 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0    0.0087       5.1     161     179 ..      21      39 ..      18      67 .. 0.87
   2 ?    5.3   0.0    0.0032       1.9     236     317 ..      87     168 ..      83     172 .. 0.69

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0087
    TIGR02729 161 glvGlpnaGkStllsavsa 179
                   ++Gl naGk t+l ++ +
  MMETSP1061-20121228|13298_1  21 LILGLDNAGKTTILYRLQN 39 
                  589**********988765 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0032
    TIGR02729 236 trvllhlidlseedekdpvedleviekeLkky..seeLaekpelvvlnkidlleeeeleellkelkeel....ekkvlaisaltkegl 317
                  t  +++++d +++++      + v + eL++   ++eL+e   lv +nk d+  + +++++ ++l        + ++ ++sal+++gl
  MMETSP1061-20121228|13298_1  87 TDAIIFVVDSADSER------MPVAKGELAAMleEDELKESILLVFANKQDQKGAMNAQQISDALGLPEirnrQWSIQETSALKGKGL 168
                  778999999998833......3344444444411467899999999******999999999887753332334677777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1043.91
//
Query:       MMETSP1061-20121228|13316_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|13313_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1732.36
//
Query:       MMETSP1061-20121228|13309_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.3   0.1     0.0025   14.7   0.1    1.1  1  TIGR02092 glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit


Domain annotation for each model (and alignments):
>> TIGR02092  glgD: glucose-1-phosphate adenylyltransferase, GlgD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1     6e-07    0.0025     244     356 ..     347     457 ..     344     462 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6e-07
    TIGR02092 244 ksyykanmdlleekifkslfylsqskiytKvkdeePtkyaetsevenSlvanGciieGkvensilsR..gvlvekdal.iknsiilqeteigegaklekviiDKdvvieeneklag 356
                  k y k ++ ll++k+ +s++ l++   +  +k e+ +    + + e S      ++ G v++s+ls   +  ++ d   i n+ + ++ + g+ga l ++i DK++v ee++++++
  MMETSP1061-20121228|13309_1 347 KLYSKNSLLLLDDKNPESML-LRK---FLDIKTEPQSGSDGDVTYEHSYSFDCKVLTGSVKDSLLSYvtAKEINADGAiIVNC-VAPKITAGKGAILYNIIGDKEIVAEEGKVMVA 457
                  66888899999999999999.777...999999999999999999999999999***********962244577665505566.679999*******************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 2670.24
//
Query:       MMETSP1061-20121228|13319_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00079   15.0  19.9    0.00086   14.9  13.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.014   12.2  22.5      0.018   11.9  15.6    1.0  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
      0.046    9.2  26.7      0.053    9.0  18.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        1.4    5.9  13.0        1.7    5.6   9.0    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9  13.8   8.4e-07   0.00086     781     945 ..       7     173 ..       1     185 [. 0.80

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 8.4e-07
    TIGR02169 781 aledleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeel.eeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev.keee 945
                  + ++ e + + +++ e++ + e l++e+ r++++ ++  a+l++++le++ll+++ + l++  + l +  +  ++  +   ++le +++e  ++l a + +L+ +  +L++e +++  + ++ e +  ++ +++ k+   l+ +++++ea++e  ++  +++ ++e 
  MMETSP1061-20121228|13319_1   7 HSNSFELQAKADEWMEVTPKEELLQAELDRLQEAFRKCSAQLERSQLENNLLRDRAASLEHTGASLRASLDGANAGHQTVATELERVKRETsAKLSALESDLSRRTTELEREHSDRATDRKRHEIELGTATTKASKEALALELRTVQAEAQAEAQAQAAQQThEREL 173
                  55777888888999999999999999999999999999999999999999999999999999999999999999999999999999887762566777789999999999999999999999999999999999999888888888888888888877776633333 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9  15.6   1.7e-05     0.018      99     253 ..      12     170 ..       2     185 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.7e-05
    TIGR01843  99 rlraeanseeaiefpdillsae.davaelvkeqeslfes...rksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqar 253
                   l+a a+++     +++ll+ae d+++e+  +  +++e+   +++ lr+  +sle++ ++l+a+l+g++a  q++ ++le +++e  a+ +  e+ l +r + Le+e + +++ ++  e e   + +ka  ++l+++l+++++++++e+++++ + + +
  MMETSP1061-20121228|13319_1  12 ELQAKADEWMEVTPKEELLQAElDRLQEAFRKCSAQLERsqlENNLLRDRAASLEHTGASLRASLDGANAGHQTVATELERVKRETSAKLSALESDLSRRTTELEREHSDRATDRKRHEIELGTATTKASKEALALELRTVQAEAQAEAQAQAAQQTHE 170
                  57899999999888999999998866666666666665511256779****************************************************************************************************999887664433 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  18.5   5.2e-05     0.053     226     387 ..      12     176 ..       2     186 .] 0.30

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 5.2e-05
    TIGR02168 226 elallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeis....rleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrse 387
                  el+  ++++ e   + e l++el++++e +++ +a+l++++ e + lr++ ++le + ++l++ l+ ++a  +    +le+ +++++++l++le++l++ +++le++ s++ ++++  +e+e  ++++k++ e+l+ el + +ae+++  +++++++++ +elrs+
  MMETSP1061-20121228|13319_1  12 ELQAKADEWMEVTPKEELLQAELDRLQEAFRKCSAQLERSQLENNLLRDRAASLEHTGASLRASLDGANAGHQtvatELERVKRETSAKLSALESDLSRRTTELEREHSDRATDRK-RHEIELGTATTKASKEALALELRTVQAEAQAEAQAQAAQQTHERELRSA 176
                  33333333333333333333333333333333333333333333333333333333333333333332222220000222223333333333333333333333333333222221.1222222222233333333333332222222222222222222222222 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   9.0    0.0016       1.7      36     192 ..      17     168 ..       1     185 [. 0.49

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0016
    TIGR03752  36 dkalaelspeelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqaleaekk...elkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegdkaqseskdevvwvepsdakatdregkksa 192
                  +++ +e++p+e + l +e d        l  + +++  +l++ + eN+ l+++  +l+++  s++  ++ a +++++   el++ k++++++   le++l+  +++le   + +++ ++   + lG+ +++ ++++ + e++ v+ + +++ +++  +++
  MMETSP1061-20121228|13319_1  17 ADEWMEVTPKE-ELLQAELDR-------LQEAFRKCSAQLERSQLENNLLRDRAASLEHTGASLRASLDGANAGHQTvatELERVKRETSAKLSALESDLSRRTTELEREHSDRATDRKRHEIELGTATTKASKEALALELRTVQAEAQAEAQAQAAQQT 168
                  33344444444.444444444.......444555566666666666666666666666666666666665554433300023333333333333344444444444445556666666667788999888888887766666666555444444433211 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 1115.91
//
Query:       MMETSP1061-20121228|13314_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 1063.91
//
Query:       MMETSP1061-20121228|13317_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 1719.08
//
Query:       MMETSP1061-20121228|13321_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   14.7   0.0      0.014   13.6   0.0    1.6  1  TIGR02558 HrpB2: type III secretion protein HrpB2


Domain annotation for each model (and alignments):
>> TIGR02558  HrpB2: type III secretion protein HrpB2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.5e-06     0.014      23      89 ..      13      82 ..      10     103 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.5e-06
    TIGR02558 23 aelverFqALmskaavekp..alarskepsaisrlvaaqdaevravvddvealeerak.klsleeilvee 89
                 a  v+ FqAL ++ a+ +      ++   +ai+ l   q++ +r++ + + +le++ + +   +e++v++
  MMETSP1061-20121228|13321_1 13 ATTVSGFQALPQSPATSRSvsTRLHVTPAEAIATLSTSQENIIRKIQSTISDLEHKPDfTWNGSEVVVDS 82
                 677999*****986655541144589999***********************987633133445666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1484.88
//
Query:       MMETSP1061-20121228|13320_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 412.47
//
Query:       MMETSP1061-20121228|13324_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 295.40
//
Query:       MMETSP1061-20121228|13322_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-18   64.0   0.0    4.4e-18   63.2   0.0    1.4  1  TIGR01068 thioredoxin: thioredoxin
    2.9e-08   31.8   0.0    5.5e-08   30.9   0.0    1.4  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    1.1e-06   26.3   0.0    1.6e-06   25.7   0.0    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    9.5e-06   23.1   0.0    0.00014   19.3   0.0    2.2  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.2   0.0   4.3e-21   4.4e-18      10      98 ..     223     314 ..     215     317 .. 0.84

  Alignments for each domain:
  == domain 1    score: 63.2 bits;  conditional E-value: 4.3e-21
    TIGR01068  10 vassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqe..iaakygirsiPtlllfkngk.evkrvvGakpkaalkelie 98 
                  + +++k+ ++DfwA+WC  C+++aP+l ++++++++kv++v +n d+ ++  + ++ g+ +iP l +++++  + +  +Ga+pk+ l++ i+
  MMETSP1061-20121228|13322_1 223 IGRNSKPTVIDFWAPWCENCRYMAPTLFQVEESYKDKVNFVMVNGDDPNNwpLIEALGVDAIPHLAMIESDGtVDTALIGAVPKEWLSRDID 314
                  556778****************************************9887225689*********88876550556689*****99988765 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   5.4e-11   5.5e-08      10      84 ..     223     296 ..     217     311 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 5.4e-11
    TIGR01126  10 vldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkke 84 
                  +  ++k ++++f+aPWC  C+ +aP+  ++ +++k++  + ++ + d  ++  l + ++v++ P l +++++ + 
  MMETSP1061-20121228|13322_1 223 IGRNSKPTVIDFWAPWCENCRYMAPTLFQVEESYKDKV-NFVMVNGDDPNNWPLIEALGVDAIPHLAMIESDGTV 296
                  55678999***************************865.45555556666778999**********999988765 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.6e-09   1.6e-06     361     408 ..     225     272 ..     221     297 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.6e-09
    TIGR01130 361 detKdVLvefYApWCGHCkkLapiYeelaekykkeedvviakldataN 408
                  +++K + + f+ApWC  C+ +ap+  ++ e yk++ + v+++ d ++N
  MMETSP1061-20121228|13322_1 225 RNSKPTVIDFWAPWCENCRYMAPTLFQVEESYKDKVNFVMVNGDDPNN 272
                  578999****************************99***999998887 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   1.4e-07   0.00014      57     105 ..     221     272 ..     201     318 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.4e-07
    TIGR00385  57 aevlkkgklvLlnvwasWCptCraehplLkela...keglrivgvdykDesq 105
                  +e+ +++k++++++wa WC  Cr   p+L ++    k+ ++ v v+  D+++
  MMETSP1061-20121228|13322_1 221 SEIGRNSKPTVIDFWAPWCENCRYMAPTLFQVEesyKDKVNFVMVNGDDPNN 272
                  4888999**********************98852224558888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1929.07
//
Query:       MMETSP1061-20121228|13327_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 551.95
//
Query:       MMETSP1061-20121228|13325_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.5    5.4  26.7        1.4    6.7   4.3    2.1  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   4.3   0.00034       1.4      62     164 ..      45     146 ..      25     174 .. 0.60
   2 ?    4.0   9.6    0.0023       9.3      70     131 ..     172     245 ..     146     274 .. 0.51

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00034
    TIGR03499  62 eeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrkelkalkellekqlselaleeedperakllkklleagvseelarellekl 164
                  + ++ +++++ ++++ +++++ + +  ++ +e+++e ++ ++k++ +a+++  k+ k+ +  le++ ++++  e+++++a++l+k   a++  +++ +l +  
  MMETSP1061-20121228|13325_1  45 DTDKQQQQQQHSQKQGKKRQRGSGSGGSNDNENENEDESGVSKETTKASASGTKQSKKRRGPLETLGAKIR-LESTESKAEILSKFAGADFCGSHIAKLSSAN 146
                  11122222222222222222222222333333444444444555555558889999999999999999986.9999****************99999987654 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.0023
    TIGR03499  70 leeaepkklskaeekeekekeaeekaaeaaqeaekkleeae..............eelrkelkalkellekqlsel 131
                  l+++++++++++++ ++k+k++++++++++q++++++++ +               ++ k+l+ +k  + k++ + 
  MMETSP1061-20121228|13325_1 172 LKNNNNNNKQNKKS-KQKQKQQQRQQQRQQQQQQQQQQQ-RspraiicclsarrsVAVLKDLAPMKLRVAKLFPKQ 245
                  22222222222222.222222222222222222222222.234567888666666667777777777666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       686  (0.167235); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                        44  (0.0107265); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.49
# Mc/sec: 1026.28
//
Query:       MMETSP1061-20121228|13328_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 2336.21
//
Query:       MMETSP1061-20121228|13329_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2343.94
//
Query:       MMETSP1061-20121228|13332_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.09s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 767.94
//
Query:       MMETSP1061-20121228|13331_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-08   31.6   0.2    2.1e-08   31.2   0.1    1.2  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   5.1e-12   2.1e-08       5     102 ..      90     192 ..      86     224 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 5.1e-12
    TIGR00115   5 ltvevpaeevkeevdkalkelakkvkipGFRkGKvPrsvvkkrygkevlqealnellqesfkeavkeekikpl..gqpeieeke........lekgkdleftaefevy 102
                  l+ +v+ + v+e     lke akk++ pGFRkG+vP         ++++  a++e++ +++++av+   +k +  +  e+e+ e        ++ g+dl+fta+f   
  MMETSP1061-20121228|13331_1  90 LQATVEGKLVQELHRTVLKESAKKANFPGFRKGQVPPFAM-----PQIRGFAVQEAIVQTCQSAVDAYGLKSVsgSDGEVEVLEdipevakaYKLGDDLQFTATFNAI 192
                  678999******************************9876.....455666666666667777777777777653333355555666788889**********99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.43
# Mc/sec: 693.71
//
Query:       MMETSP1061-20121228|13330_1  [L=977]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (977 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.59
# Mc/sec: 2185.65
//
Query:       MMETSP1061-20121228|13334_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-32  109.2   0.0    8.7e-32  108.2   0.0    1.5  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.2e-29  101.5   0.9    7.1e-29   99.0   0.6    1.9  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    4.5e-28   96.2   0.5    7.2e-27   92.2   0.1    2.2  2  TIGR02415 23BDH: acetoin reductases
      1e-27   94.7   0.1    1.3e-27   94.3   0.1    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    3.2e-23   80.5   0.3    7.2e-23   79.3   0.2    1.6  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    8.2e-23   79.0   0.5    2.9e-22   77.2   0.3    1.9  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    2.9e-21   73.9   1.9      6e-20   69.6   1.3    2.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      6e-13   46.5   1.9    1.3e-12   45.5   1.3    1.5  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
      8e-12   42.8   1.0    1.7e-10   38.5   0.7    2.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.4e-11   41.8   0.3    3.8e-11   40.4   0.2    1.6  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    2.5e-11   41.1   1.4    3.9e-09   34.0   1.0    2.1  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    1.5e-08   32.2   0.2    2.2e-08   31.6   0.1    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
    7.4e-05   20.2   0.1    0.00084   16.8   0.0    2.1  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
     0.0032   14.9   0.1     0.0061   14.0   0.1    1.5  2  TIGR01777 yfcH: TIGR01777 family protein
     0.0033   14.5   0.0     0.0053   13.8   0.0    1.3  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
  ------ inclusion threshold ------
      0.017   11.8   0.7      0.025   11.3   0.5    1.5  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
      0.019   12.0   0.4      0.045   10.7   0.2    1.7  1  TIGR00507 aroE: shikimate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.2   0.0   3.6e-34   8.7e-32       2     211 ..       9     249 ..       8     264 .. 0.81

  Alignments for each domain:
  == domain 1    score: 108.2 bits;  conditional E-value: 3.6e-34
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle............eeaaeaaakeleeaggevlalkadvtkeeeiadlieav..........aaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkq.......gwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLve.kqiadqaktrgi.seeqvvkevl 211
                  k al+tG ++ ig+aiak+l  + ++vv+++ +            ++  ++ +k+ +++ ++v a++ dvtke+++ +l +a+          +++ +s+d+LvnnAGi   a +ee    + e ++ vn+ +af   r+a+  mk++       g Griini+s+ ++   +  +aY ++K ++ Gl+++lAl+v  +gi + +i Pg +   L   + i+ + +t+g    e+v + v+
  MMETSP1061-20121228|13334_1   9 KLALITGGGGTIGKAIAKALLTENFSVVLTGRRlsrleevresllSDRSSSNNKSNSNSNATVYAIPSDVTKEDSVVKLFRAIdalphrgtntKTKTSSIDLLVNNAGINSTATLEELTASELESVLGVNVVGAFLCAREAIVRMKQAsstsgsgGGGRIINIGSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRGHGISVGTIHPGNIVSELLTpEEIERRGRTEGFlRPEDVANCVV 249
                  789***************************988656544433333333344455666777889999*********998877652222222211568899***********************************************863333332457***************************************************98887764289999999999614566666554 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.6   2.9e-31   7.1e-29       1     219 [.      11     251 ..      11     261 .. 0.76

  Alignments for each domain:
  == domain 1    score: 99.0 bits;  conditional E-value: 2.9e-31
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeel............keagvkaaavkldvsdeeevkelveev..........eeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrs.......GriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkrlgkpeevaaavafL 219
                  al+tG++  iGkaiak+l +e ++vv+t r+  +++ee++e+l            +++ +++ a+  dv++e++v +l++++          ++++++id+lvnnAGi   + l +++ ++ ++v+ vn+ g+f ++++++ +m ++ s       Griini+s+ +++  ++ + Y++sK  + gl++sla ++  ++i v ++ PG i +++    +    ++i+++   + + +pe+va++v+ +
  MMETSP1061-20121228|13334_1  11 ALITGGGGTIGKAIAKALLTENFSVVLTGRRL-SRLEEVRESLlsdrsssnnksnSNSNATVYAIPSDVTKEDSVVKLFRAIdalphrgtntKTKTSSIDLLVNNAGINSTATLEELTASELESVLGVNVVGAFLCAREAIVRMKQASStsgsgggGRIINIGSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRGHGISVGTIHPGNIVSELLT--P----EEIERRGRTEGFLRPEDVANCVVTM 251
                  79*************************97754.4455554443111111111100223345566789********99987652222222221567889**********************************************9986444444448*****************************************************999743..2....3333334445556677777766655 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.2   0.1     3e-29   7.2e-27       1     187 [.       9     223 ..       9     236 .. 0.77
   2 ?    2.2   0.0     0.092        22     220     234 ..     239     253 ..     225     261 .. 0.79

  Alignments for each domain:
  == domain 1    score: 92.2 bits;  conditional E-value: 3e-29
    TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadln........eetaket....akelkekgtkavavkldvsdksev...eeave.......qaveklGeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkh......kGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktem 187
                  k+al+tG++  iGkaia+ L  + f+v+++  +        e  + +      k  ++++    a+ +dv++ ++v   ++a++       ++++k  ++d+lvnnaG++ + +++e+t  ele +  vnv g +   + a  ++k+  +      +G+iin  si++    p+ +ay+++kfa+ gl ++ a ++  +gi v +  PG +  e+
  MMETSP1061-20121228|13334_1   9 KLALITGGGGTIGKAIAKALLTENFSVVLTGRRlsrleevrESLLSDRsssnNKSNSNSNATVYAIPSDVTKEDSVvklFRAIDalphrgtNTKTKTSSIDLLVNNAGINSTATLEELTASELESVLGVNVVGAFLCAREAIVRMKQASStsgsggGGRIINIGSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRGHGISVGTIHPGNIVSEL 223
                  79**************************9876633332332222222200002222223334457789*****9872224556544444435788999***************************************999988888754322222259***************************************************776665 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.092
    TIGR02415 220 sePedvaelvsflas 234
                   +Pedva++v  +a+
  MMETSP1061-20121228|13334_1 239 LRPEDVANCVVTMAA 253
                  48********98886 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.1   5.5e-30   1.3e-27     411     600 ..       5     220 ..       2     238 .. 0.85

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 5.5e-30
    TIGR02632 411 elarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava..........lkldvtdeeavkaafaev..........alayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkq......glggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavl 600
                   l++++al+tGg++ iG+++a+ l  e   vvl+     ++e+v + l +   + +  +          +  dvt+e++v + f+++            +   +d++vnnaGi +++ lee +++e +  l +++ G fl area+  +++       g gg ++ i+s  a   ++n++ay+++k a + l r la++   +gi v t+ P  ++
  MMETSP1061-20121228|13334_1   5 ALTSKLALITGGGGTIGKAIAKALLTENFSVVLTGRRLSRLEEVRESLLSDRSSSNNKSnsnsnatvyaIPSDVTKEDSVVKLFRAIdalphrgtntKTKTSSIDLLVNNAGINSTATLEELTASELESVLGVNVVGAFLCAREAIVRMKQAsstsgsGGGGRIINIGSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRGHGISVGTIHPGNIV 220
                  6899*****************************************99876555544444568888888899***********9987631111111113345679******************************************99987522222245789*************************************************9988 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.2     3e-25   7.2e-23       1     221 [.       9     251 ..       9     260 .. 0.75

  Alignments for each domain:
  == domain 1    score: 79.3 bits;  conditional E-value: 3e-25
    TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvap...neerakew........lqekevegfdvavvkadvssfeeakaavakvea..........elGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergf.......GriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPvkrlgkpeeiaaavafl 221
                  ++al+tGg g iG+ai+k+l ++ + vv + +     ee ++++        +++++ ++  v+ +  dv++ ++  + ++ + a          +  ++d+lvnnaGi   a+++ +t+ + e v+ +n+ + f  +r+ i  m++ +        Griini s+     +   + y+++k  + G++++la ++  +g++v +i PG i  e+ +  +e++         ++ + +pe++a++v+ +
  MMETSP1061-20121228|13334_1   9 KLALITGGGGTIGKAIAKALLTENFSVVLTGRRlsrLEEVRESLlsdrsssnNKSNSNSNATVYAIPSDVTKEDSVVKLFRAIDAlphrgtntktKTSSIDLLVNNAGINSTATLEELTASELESVLGVNVVGAFLCAREAIVRMKQASStsgsgggGRIINIGSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRGHGISVGTIHPGNIVSELLT--PEEI----ERRGRTEGFLRPEDVANCVVTM 251
                  78************************997754322222333322111111003344445567888899******9999888765433222222226788*******************************************9998764333333349*****************************************************999875..3433....3334445555666666666655 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.3   1.2e-24   2.9e-22       2     212 ..       7     232 ..       6     265 .. 0.74

  Alignments for each domain:
  == domain 1    score: 77.2 bits;  conditional E-value: 1.2e-24
    TIGR03971   2 eGkvalitGaarGqGraeavrlaaeGadiiai........dlcep.lsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalier......knGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamiepeamrel 212
                    k+alitG     G+a a +l +e   ++          ++ e+ lsd  +    ++ + + t+ ++ +   k  + +   r +++l +   ++ ++   +d++v+naG+ s +++ el++ + + vl vn+ G++ + + ++  + ++      ++GG ii ++s ++    p+++ y+++k+ + gl ++la+++  +gi v +ihP  +  ++++pe + + 
  MMETSP1061-20121228|13334_1   7 TSKLALITGGGGTIGKAIAKALLTENFSVVLTgrrlsrleEVRESlLSDRSSSNNKSNSNSNATVYAIPSDVTKEDSVVKLFRAIDALPHRGTNTKTKTSSIDLLVNNAGINSTATLEELTASELESVLGVNVVGAFLCAREAIVRMKQAsstsgsGGGGRIINIGSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRGHGISVGTIHPGNIVSELLTPEEIERR 232
                  56888888888888888888888888777754211111111111112333333334444445555555555444444444555666666666666677889********************************************998753333336799*******************************************************99999887654 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.6   1.3   2.5e-22     6e-20       3     188 ..       6     221 ..       4     260 .. 0.77

  Alignments for each domain:
  == domain 1    score: 69.6 bits;  conditional E-value: 2.5e-22
    TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGadivgvg..iselsetqekv............ealGrkflslkadladeeaakalvd..........eaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllk......qGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGylet 188
                  l  k al+tG    +G++ia +l +    +v +g   s l+e +e +            ++  ++++++  d+++e+++ +l            ++  ++  id lvnnaGi   +  +e++ ++ + vl vn+   fl ++++  ++ +      +G  g+iini s+ +f    + ++yt+sk a+ Gl+++la +   +gi v +i PG + +
  MMETSP1061-20121228|13334_1   6 LTSKLALITGGGGTIGKAIAKALLTENFSVVLTGrrLSRLEEVRESLlsdrsssnnksnSNSNATVYAIPSDVTKEDSVVKLFRaidalphrgtNTKTKTSSIDLLVNNAGINSTATLEELTASELESVLGVNVVGAFLCAREAIVRMKQasstsgSGGGGRIINIGSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRGHGISVGTIHPGNIVS 221
                  7889*******************9999999887733466777766552222111111112234566788889999988877653111111111123345569*************************************9998765554311121256899***************************************************9875 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   1.3   5.3e-15   1.3e-12       2     191 ..       7     225 ..       6     240 .. 0.73

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 5.3e-15
    TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaai..........rek..ggkaeavavditdrasvda...avaa.......aeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmver.......kagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalle 191
                   +k a++tgggg ig ai + +  e   v +    +   e+v +++           ++    +  a+  d+t+++sv     a+ a       +++    +d+lvnnag +   ++ +   +e e ++ +n++ga+      +  m +        + gri+ni s +a +     + y++ k  +  +s++la +   hgi+v  + pg   + ll 
  MMETSP1061-20121228|13334_1   7 TSKLALITGGGGTIGKAIAKALLTENFSVVLTGRRLSRLEEVRESLlsdrsssnnkSNSnsNATVYAIPSDVTKEDSVVKlfrAIDAlphrgtnTKTKTSSIDLLVNNAGINSTATLEELTASELESVLGVNVVGAFLCAREAIVRMKQAsstsgsgGGGRIINIGSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRGHGISVGTIHPGNIVSELLT 225
                  6799*****************9999888877655444444443332111111111123300344568889*******9752335543222222256667899**********************************776554444444321111111569***************************************************98888774 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.7   7.2e-13   1.7e-10       2     191 ..      12     228 ..      11     250 .. 0.73

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 7.2e-13
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrs........dradaeesvaairaq.ggnarl..lkfdvadrvavrevlea.........dia.ehgayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirark......ggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaeve 191
                  l+tg    ig+aia  l ++ f + +  r+        +   ++ s ++ +++  +na +  +  dv++  +v +++ a         + + +  +   +v nagi+  a++  l+  + ++v+  n+ g +   +  ++ m +a        ggrii + s+s          y+++k  + g +++la+++    i+v  i pg i +e+++ +e
  MMETSP1061-20121228|13334_1  12 LITGGGGTIGKAIAKALLTENFSVVLTGRRlsrleevrESLLSDRSSSNNKSNsNSNATVyaIPSDVTKEDSVVKLFRAidalphrgtNTKtKTSSIDLLVNNAGINSTATLEELTASELESVLGVNVVGAFLCAREAIVRMKQASStsgsggGGRIINIGSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRGHGISVGTIHPGNIVSELLTPEE 228
                  789999999999999999999999987664211111111112222222222221333433115678887777665544321111111122202234455799****************************************9986434444489*****************************************************999997655 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.2   1.6e-13   3.8e-11       3     213 ..      10     226 ..       8     257 .. 0.69

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 1.6e-13
    TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeii..dacfrafGrcdvl....vnnasafyptpllrgdae.egaaekkslev.qvaelfGsnaiaplllikafaqrqkgtrae.lrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllpdamp 213
                   al+tG+   iG++ia++l +e + vvl  rr +   +++ + l ++r++s    +      a++++  +++   d+  + f   d l     n  +      ll ++a+ + +a  + l + +   ++G n +  +l  +    r+k+ ++    +    i+n+    +  p +  + yt +k a++Gl+rs al++  ++i v ++ pG  +     p
  MMETSP1061-20121228|13334_1  10 LALITGGGGTIGKAIAKALLTENFSVVLTGRRLSR-LEEVRESLLSDRSSSNNKSN--SNSNATVYAIPSDVTkeDSVVKLFRAIDALphrgTNTKTKTSSIDLLVNNAGiNSTATLEELTAsELESVLGVNVVGAFLCAREAIVRMKQASSTsGSGGGGRIINIGSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRGHGISVGTIHPGNIVSELLTP 226
                  69**************************9887543.44555666666666654332..23333445555555433566666666666622212222333333444444331333333333331344579*********99987777766555404556789******9999****************************************655444444 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   1.0   1.6e-11   3.9e-09       3     217 ..       6     249 ..       4     266 .. 0.68

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 1.6e-11
    TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvavldksaagleele...............aahgdkvvgvegdvrllddhke...ava.......rcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasr.......gsviftv.snagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdlrglksldladksissvplgdllksvl 217
                  l+ +++l+tgg+  +g+a+ +  ++e   v +  +   +lee++               ++  + v ++  dv   d+  +   a++       +   +   +d l++nagi   +t l    ++     ++ v  +nv g +l+++ a+  + ++        g+ i+ + s + f p    + yt++k a+ gl + la ++  + + v  + pg + ++l  ++ ++   ++   +  +d+ + v+
  MMETSP1061-20121228|13334_1   6 LTSKLALITGGGGTIGKAIAKALLTENFSVVLTGRRLSRLEEVResllsdrsssnnksnSNSNATVYAIPSDVTKEDSVVKlfrAIDalphrgtNTKTKTSSIDLLVNNAGINSTAT-L----EELTASELESVLGVNVVGAFLCAREAIVRMKQASstsgsggGGRIINIgSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRGHgISVGTIHPGNIVSELLTPEEIERRGRTEGFLRPEDVANCVV 249
                  78899******************9999999999999999988762222222211111112234567788888866555433111221111100023334556888999999865443.3....56667778999******99998888877665432123233334555553778999*************************966559**************99998887777666655555555555 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   9.3e-11   2.2e-08       2     194 ..      10     217 ..       9     226 .. 0.73

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 9.3e-11
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeie..........aevsalsvdlvsldleaakdvedllkaleesik......keeyerillinnaGtlgdvskrekelsDsknvqkyydsnvt.slvvltsellkklkel....qglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapG 194
                  l+l+tG    +G+++a+ l      e   +vL +R +  L e ++++              s+ +v   + d+ ++  v +l++a+ ++++       +  +  ll+nnaG    ++  e+ l+ + +++     nv+ ++++    +++  + +     g    ++n+ s++a  p +  + Y +sk a + + + Lal+ + + + v    pG
  MMETSP1061-20121228|13334_1  10 LALITGGGGTIGKAIAKALLT----ENFSVVLTGRRLSRLEEVRESLLsdrsssnnksNSNSNATVYAIPSDVTKEDSVVKLFRAIDALPHrgtntkTKTSSIDLLVNNAGI-NSTATLEE-LT-ASELESVLGVNVVgAFLCAREAIVRMKQASstsgSGGGGRIINIGSISAFSPRPNSTAYTTSKFAINGLSRSLALDVRgHGISVGTIHPG 217
                  689999999999988877766....8899*****************9845543222211123456888999***************98765111110334444588899985.55555444.55.4568888889987256777777777655555543355679**********************************9987666666666666 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.5e-06   0.00084       6     147 ..      11     177 ..       7     185 .. 0.71

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.5e-06
    TIGR01289   6 viitgassglglaaakalvekgkwhvvmacrdlekaekaaksl..........glpkdsytilkl..dlasldsvrkfv..........eqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekd.....krliilgsvtan 147
                  ++itg    +g a akal+ +  + vv++ r l + e++ +sl            ++ + t+  +  d+++ dsv k+           ++ +    s+d lv na +          +a + e  ++ n +g fl ++  +  +k++++++      r+i +gs++a 
  MMETSP1061-20121228|13334_1  11 ALITGGGGTIGKAIAKALLTEN-FSVVLTGRRLSRLEEVRESLlsdrsssnnkSNSNSNATVYAIpsDVTKEDSVVKLFraidalphrgTNTKTKTSSIDLLVNNAGINSTAT-LEELTASELESVLGVNVVGAFLCAREAIVRMKQASSTSgsgggGRIINIGSISAF 177
                  789****************998.**********999988766522221111112333445554444499999*998876122222222234566677899***9999986544.44578999*****************999999988776522333599999999875 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   2.5e-05    0.0061       2      59 ..      12      68 ..      11      81 .. 0.75
   2 ?   -2.9   0.0       3.6   8.8e+02      51      68 ..     101     118 ..      78     129 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.5e-05
    TIGR01777  2 litGgtGliGralveelekkghevviltrskekekeekkesakevaeeaeeealegvd 59
                 litGg G iG+a++++l +++ +vv+  r+ ++ +e  +   ++ ++ +++++ ++ +
  MMETSP1061-20121228|13334_1 12 LITGGGGTIGKAIAKALLTENFSVVLTGRRLSRLEEVRESLLSDRSS-SNNKSNSNSN 68
                 8*************************999999766666555544443.3444444444 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 3.6
    TIGR01777  51 eeealegvdavinLaGep 68 
                   +++++++d ++n aG +
  MMETSP1061-20121228|13334_1 101 TKTKTSSIDLLVNNAGIN 118
                  445678889999988865 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.2e-05    0.0053       2      99 ..      12     124 ..      11     137 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.2e-05
    TIGR02197   2 ivTGgaGfiGsnlvaalnekgetdilvvDklrk..................gekllnlkdeeiadyidkeellerlekeelkkveavfHegAisdTteldgellmenN.yeyskell 99 
                  ++TGg G iG ++++al  ++ + +l   +l++                  ++   n +  +i  ++ ke+ + +     ++ ++a+ H+g  ++T +   +ll++n  ++++ +l 
  MMETSP1061-20121228|13334_1  12 LITGGGGTIGKAIAKALLTENFSVVLTGRRLSRleevresllsdrsssnnkSNSNSNATVYAIPSDVTKEDSVVK----LFRAIDALPHRGTNTKTKTSSIDLLVNNAgINSTATLE 124
                  79*******************999999999999999******999874432223334444444444444444444....5678*************999999999875134444444 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5    0.0001     0.025       3      41 ..      11      49 ..       9     155 .. 0.94

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0001
    TIGR03466  3 vlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnle 41
                 +l+tG++G +G+a++++ll+e  +v +  r+ s+ ++++
  MMETSP1061-20121228|13334_1 11 ALITGGGGTIGKAIAKALLTENFSVVLTGRRLSRLEEVR 49
                 89**********************998888888877765 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.2   0.00019     0.045     117     162 ..       8      54 ..       3      79 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00019
    TIGR00507 117 ekrvliiGAGGa.akavaleLlkadkeviiaNRtvekaeelaerlqe 162
                   k +li G GG  +ka+a +Ll ++ +v+++ R +++ ee+ e l +
  MMETSP1061-20121228|13334_1   8 SKLALITGGGGTiGKAIAKALLTENFSVVLTGRRLSRLEEVRESLLS 54 
                  56789999999768************************999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.45
# Mc/sec: 809.53
//
Query:       MMETSP1061-20121228|13335_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-60  202.3   0.0    3.5e-60  201.8   0.0    1.1  1  TIGR01357 aroB: 3-dehydroquinate synthase


Domain annotation for each model (and alignments):
>> TIGR01357  aroB: 3-dehydroquinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   0.0   8.6e-64   3.5e-60      21     342 ..     223     556 ..     207     558 .. 0.93

  Alignments for each domain:
  == domain 1    score: 201.8 bits;  conditional E-value: 8.6e-64
    TIGR01357  21 asklvvitdeeveklvaekleealkslgvevlvlvvpdgeesKsletvaklldqlleeklerksvlvaiGGGvvgDlaGFvAatylRGirlvqvPTtllamvDssvGGKtginl......plgkNliGafyqPkaVlidlkvletlperelreGmaEviKhgliadaelfeelekneklllkl.......aelealeelikrsievKaevVeeDekesglRalLNfGHtlgHaiEallkyklsHGeaVaiGmvveaklseklgllkaellerlvallkklglptklkkklsveellkallkDKKnegskiklvlleeiGkaalasevteeellea 342
                   ++ ++++de+v++ +++k+++  +++ ++++++v+p ge  K  + v k+ld+++  kl r++  +aiGGGvv+D+aG +A  y RG+++v vPTtlla vD+svG K+gi+       ++ kN++G+fy P+  l+d+++++t+++r++++G++E++K +l+   +lfe le++ k+l+++       + + ++++++  si++  e       e  l ++  +GHt+   +E++ + +++HGeaV i   +   ls   g+++ + ++r+ +++++l+lpt+ ++ ++ e + ++++    ++++  +++l+++iG+ +  s++t eel +a
  MMETSP1061-20121228|13335_1 223 YNTRFAVIDEAVNEFYGDKILKYFEAQNIKLHTIVIPGGEPDKRNDAVDKILDAMCVYKLRRREPFLAIGGGVVLDIAGMAACLYRRGVPFVRVPTTLLAIVDASVGVKNGIDYccsstaDTYKNRVGSFYAPSSCLLDTSFIATQDSRNISNGFGEILKLALVRSVDLFELLETHGKALVDSrfadtssVPEGVAQRIVDVSIQIMLEELGPNLWEYNLERCVDYGHTFSKLLEMVPGVDIMHGEAVNIDGFFCCLLSYLRGFISMDTVNRVFRCMQSLELPTTSSH-FQSELAWQSCKDAVEHRHGAQRIPLITDIGESVCVSDITPEELDRA 556
                  367799***************999999*************************************************************************************95333333789*******************************************************98888899998866689999****************************************************8888899****************************997.999999999999999*****************99999998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 2149.54
//
Query:       MMETSP1061-20121228|13336_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-15   52.6  17.4    0.00015   18.8   6.8    3.3  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    5.9e-12   43.6   0.1    1.3e-05   22.7   0.0    3.1  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.1e-10   39.1  14.4    9.2e-07   26.2   0.0    4.3  4  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.3e-07   29.4   1.5    0.00011   19.8   0.4    2.2  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    2.6e-05   20.7  16.9    3.3e-05   20.4   0.0    3.3  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
  ------ inclusion threshold ------
       0.96    5.6  29.6        3.1    3.9  20.5    1.8  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
        1.1    4.6  14.5        1.6    4.1  10.0    1.2  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   6.8   2.5e-07   0.00015      49     151 ..      48     150 ..      11     153 .. 0.56
   2 !    8.5   0.0   0.00032      0.19     264     296 ..     191     223 ..     180     230 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.5e-07
    TIGR01622  49 fdrrdrdrdky...rdrerrsrkrreserererekerrredevrrkrkeredrrerrekeerlkeelteeeRDartvfvlqlalklreRdlkEFFskvgkvrdvrl 151
                   d+ +++ d +   ++ ++r++k+r+s+ + ++++++ ++ e+++  +e+++  e +++     +++ +++ ++rt+fv +l+l ++ + l   F + g+++  r+
  MMETSP1061-20121228|13336_1  48 PDEGESNNDGPtelSESKKRKKKKRKSNSNDDNNDNKTEGGETQNNANENDNDNENDNE---DSKNEPDQKDEERTIFVGNLPLTITRKALAALFRDCGPIASSRI 150
                  22223333333001334444444444444444444444444444444444444444444...355566666678**************************998765 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00032
    TIGR01622 264 GFiqFsdaeeakeAleklNGlelAGReikvgla 296
                  G++ F++ae   +Al   N lel G +i+v  a
  MMETSP1061-20121228|13336_1 191 GYVVFKNAEDVEKALALNNQLELDGTKIRVDRA 223
                  779999999999999888889999999999765 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.6e-05     0.021      91     128 ..     120     157 ..     110     166 .. 0.89
   2 !   22.7   0.0   2.3e-08   1.3e-05      48     143 ..     191     289 ..     178     295 .. 0.63
   3 !   20.3   0.0   1.2e-07   7.3e-05     271     322 ..     232     289 ..     228     314 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.6e-05
    TIGR01661  91 nlyvsGlPktmtqkeleslfspfGkiitsrilsdnvtd 128
                   ++v  lP t+t+k l +lf++ G i +sri s  vt+
  MMETSP1061-20121228|13336_1 120 TIFVGNLPLTITRKALAALFRDCGPIASSRIRSVPVTG 157
                  6899***************************9988887 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 2.3e-08
    TIGR01661  48 GfvnyvreedaekavnslnGlrlqnktikvsyarPssdsikganlyvsGlPktmtqkeleslfs.....pfGkiitsrilsdnvtdlskGvGfirfdkree 143
                  G+v + + ed eka++  n l l    i+v  a P+ d  +   ++v  lP +     l++ f+     + G ++  ri+ d+ t + kG G++ f +++ 
  MMETSP1061-20121228|13336_1 191 GYVVFKNAEDVEKALALNNQLELDGTKIRVDRATPTVDPSR--SVFVGNLPYASNETTLQEHFEegcvlEPGDVLGVRIVRDKETFQCKGFGYVLFREKNM 289
                  66777777777777777777777777777777777777655..3566666655444444433331111145777777777777777777777777766655 PP

  == domain 3    score: 20.3 bits;  conditional E-value: 1.2e-07
    TIGR01661 271 cifvynlspdtdeavlqlfgpf......GavqsvkiirdlttnkckGygfvsmtnyde 322
                   +fv nl   ++e+ lq   +       G v  v+i+rd +t +ckG+g+v   + + 
  MMETSP1061-20121228|13336_1 232 SVFVGNLPYASNETTLQEHFEEgcvlepGDVLGVRIVRDKETFQCKGFGYVLFREKNM 289
                  589*************86544301122267789******************8766555 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -7.3   9.0         7   4.1e+03     438     513 ..      28     104 ..       8     118 .. 0.30
   2 !    8.8   0.0   0.00028      0.16     275     317 ..     108     150 ..      99     155 .. 0.73
   3 !    8.7   0.0    0.0003      0.18      44      75 ..     190     221 ..     173     231 .. 0.82
   4 !   26.2   0.0   1.6e-09   9.2e-07       2      77 ..     232     311 ..     230     323 .. 0.87

  Alignments for each domain:
  == domain 1    score: -7.3 bits;  conditional E-value: 7
    TIGR01628 438 skpeapnalaqlaqqrlqaqgr.rnlnnr.nrnvlgnmnkkqqnaaskanqanvkaqpq.aqsknqmqqvvqdnnlpqk 513
                    pe+p+   q a +r+++++   + nn   +++ +++++k++++ s++n  n  ++ +  +++n+ ++  +d   +++
  MMETSP1061-20121228|13336_1  28 ALPERPQHKPQAASKRKKTKPDeGESNNDgPTELSESKKRKKKKRKSNSNDDNNDNKTEgGETQNNANENDND--NEND 104
                  3333344333333333333222122222223333222222222222222222211111111111111111111..1111 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00028
    TIGR01628 275 lkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakv 317
                   k+e  +k +   ++v Nl  t++ + L  lF ++G i S+++
  MMETSP1061-20121228|13336_1 108 SKNEPDQKDEERTIFVGNLPLTITRKALAALFRDCGPIASSRI 150
                  4455556677777888888888888888888888888888776 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0003
    TIGR01628  44 YaYvNfqnladAerAldtlnyknlkgkpiRlm 75 
                   +Yv f+n +d e+Al   n  +l g +iR+ 
  MMETSP1061-20121228|13336_1 190 QGYVVFKNAEDVEKALALNNQLELDGTKIRVD 221
                  48****************************95 PP

  == domain 4    score: 26.2 bits;  conditional E-value: 1.6e-09
    TIGR01628   2 SlyvGdLdedvtEavLyelFke.....vgsvlsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnyknlkgkpiRlmws 77 
                  S++vG+L    +E++L e+F+e      g+vl vR+ rD+ t +  g++Yv f++++    Al   + k +  k+iR+m  
  MMETSP1061-20121228|13336_1 232 SVFVGNLPYASNETTLQEHFEEgcvlePGDVLGVRIVRDKETFQCKGFGYVLFREKNMVPTALKLHESKYM-KKKIRVMVC 311
                  99******************9633322599*********************************98888855.6789**976 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.4   1.8e-07   0.00011      54     141 ..      67     152 ..      43     161 .. 0.68
   2 !    8.3   0.0   0.00058      0.34     152     246 ..     191     288 ..     176     297 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.8e-07
    TIGR01659  54 srsrrrgyndfsgaggssaatlgsvgnlanaastnslnslgsggsddndtrasgtnlivnylpqdmtdrelyalfrtigpintcrimr 141
                   ++++r++n   ++++ + ++ g  +n an   ++  n      +++ d++ ++  + v  lp  +t + l alfr  gpi + ri  
  MMETSP1061-20121228|13336_1  67 RKKKKRKSNSNDDNND-NKTEGGETQNNANENDNDNEN-DNEDSKNEPDQKDEERTIFVGNLPLTITRKALAALFRDCGPIASSRIRS 152
                  1223333333333333.444445566777755555555.4455577788899999999***************************965 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00058
    TIGR01659 152 afvdfaseadsqraikslngitvrnkrlkvsyarpggesikdtnlyvtnlprtitddqldtifg.....kygsivqknilrdkltgkprgvafvrfnkre 246
                  ++v f    d  +a+   n + +   +++v  a p  +  +   ++v nlp +  +  l+  f        g ++   i+rdk t + +g  +v f  ++
  MMETSP1061-20121228|13336_1 191 GYVVFKNAEDVEKALALNNQLELDGTKIRVDRATPTVDPSR--SVFVGNLPYASNETTLQEHFEegcvlEPGDVLGVRIVRDKETFQCKGFGYVLFREKN 288
                  678999999******999*****************999876..589999999888888888775112225699999******************998765 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.8  10.9         7   4.1e+03      43     109 ..      43     109 ..      11     114 .. 0.45
   2 !    9.4   0.1   0.00012     0.069     271     325 ..      93     147 ..      88     151 .. 0.82
   3 !   20.4   0.0   5.7e-08   3.3e-05     279     356 ..     212     295 ..     186     315 .. 0.76

  Alignments for each domain:
  == domain 1    score: -8.8 bits;  conditional E-value: 7
    TIGR01642  43 rrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddk 109
                  r+  + d+ + ++    + s s+ +++++r+S +++++++ +++ ++++++ + +    ++   d+k
  MMETSP1061-20121228|13336_1  43 RKKTKPDEGESNNDGPTELSESKKRKKKKRKSNSNDDNNDNKTEGGETQNNANENDNDNENDNEDSK 109
                  2222334444444444444444444455555555555555554444444444444444444333333 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00012
    TIGR01642 271 vsqknsdinlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLka 325
                   +++n ++n +  e + n     d+e  +++gnLPl ++ + +  L ++ G++ +
  MMETSP1061-20121228|13336_1  93 NANENDNDNENDNEDSKNEPDQKDEERTIFVGNLPLTITRKALAALFRDCGPIAS 147
                  4566777777777788888899999999***********9999999999999865 PP

  == domain 3    score: 20.4 bits;  conditional E-value: 5.7e-08
    TIGR01642 279 nlkavekl.vnsktvldsedklyignLPldlkddqvkeLLes.....FGdLkaFnliKdlatGlsKGyaFceykdssvtdlAia 356
                   l++ +     ++ + d    +++gnLP+  ++  ++e  e+      Gd+++  +++d +t + KG++++ +++ ++   A++
  MMETSP1061-20121228|13336_1 212 ELDGTKIRvDRATPTVDPSRSVFVGNLPYASNETTLQEHFEEgcvlePGDVLGVRIVRDKETFQCKGFGYVLFREKNMVPTALK 295
                  445543332345677899999****************98875222226***************************999888875 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9  20.5    0.0053       3.1      26     128 ..      15     122 ..       2     126 .. 0.77

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0053
    TIGR03490  26 ttssnsk...qpekkpeakpeenkPkkpkkpdnkeksensnnks...nseekdeeepkskkpekkpdpsknkeeiekpkkepkkpd.kkpqadepnndhadqknnnkvdf 128
                  +++sn+    + e  pe +p+  kP+ ++k++++++ e ++n++   + +e+++++ k+ k+++++d+ +nk e  +++++ ++ d ++++ +e+ ++++dqk++++  f
  MMETSP1061-20121228|13336_1  15 KEASNQSlfeKSEALPE-RPQH-KPQAASKRKKTKPDEGESNNDgptELSESKKRKKKKRKSNSNDDNNDNKTEGGETQNNANENDnDNENDNEDSKNEPDQKDEERTIF 122
                  44455546656666777.7777.899999999999998877766566667888888999999*********999988888888888678888888888999999888777 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1  10.0    0.0027       1.6     926    1004 ..      37     118 ..       6     139 .. 0.40

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0027
    TIGR00927  926 degeedeeeiaddeevkdetgeqelnaenqgea...kedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeene 1004
                    +  ++ ++ + de+  +++g  el+  ++ +    k + +  +++++++GG+++++ +e+++++e+++e+ ++e +++++e
  MMETSP1061-20121228|13336_1   37 PQAASKRKKTKPDEGESNNDGPTELSESKKRKKkkrKSNSNDDNNDNKTEGGETQNNANENDNDNENDNEDSKNEPDQKDEE 118 
                   2222222222333333333344444333322220002222222333445566665555555553333333333332222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       304  (0.0741102); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.37
# Mc/sec: 1459.01
//
Query:       MMETSP1061-20121228|13337_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2439.52
//
Query:       MMETSP1061-20121228|13340_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1071.14
//
Query:       MMETSP1061-20121228|13342_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 647.95
//
Query:       MMETSP1061-20121228|13338_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-121  404.7   0.4   1.6e-121  404.2   0.3    1.1  1  TIGR00551 nadB: L-aspartate oxidase
    8.6e-82  273.2   0.0    1.1e-81  272.8   0.0    1.1  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
    5.8e-60  200.8   0.0    8.3e-60  200.3   0.0    1.1  1  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
    1.7e-52  176.6   0.1    2.6e-52  176.0   0.1    1.2  1  TIGR01176 fum_red_Fp: fumarate reductase, flavoprotein subunit
      2e-43  146.8   0.0    4.6e-43  145.6   0.0    1.5  1  TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
    1.3e-32  110.9   0.0    1.4e-18   64.7   0.0    2.5  2  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00045   16.7   0.1       0.17    8.2   0.0    2.2  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0058   13.3   0.8       0.44    7.1   0.0    2.3  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase


Domain annotation for each model (and alignments):
>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  404.2   0.3  3.1e-124  1.6e-121       4     484 ..      58     583 ..      55     586 .. 0.85

  Alignments for each domain:
  == domain 1    score: 404.2 bits;  conditional E-value: 3.1e-124
    TIGR00551   4 dvvviGsGaagLsaalalaekyr..vvvlska.evkesasvyaqgGiaaa.l..aetDsidahveDtlaaGaglcdeeavesvvsdakeavqeLve......aGvsfdrneqgslaltregghsrrRilhaadatGrevistLlkkakaepkveilerevaldllietgrvvGvlvves...etvevlhakavvlatGGlgklyaattnpk..vstGdgialalraGvevrdleFvqFhPtalvkkrvrrfLiteavRGeGaiLvdrdGkrfvadvhprGeLapRDivaraideelkktekd...cvflDlsaiea..iksrFPtitaklrkaGidierepiPvvPaahytiGGisvdaygrtevkGLYaiGevastGlhGanRlasnsLLeclvfGasaaraisrkklaa.........sdesssavede..vrleteddraelqrkvs...elrsllweaagivrlaesLeealaklkelkeevdel......lelrnLlqva...klvvasallReesRGahy 484
                  +++v+GsG+ag +aal +ae+yr  v++l      ++ +s +aqgGi    +  a +Ds ++  +D   aGaglc  +av +v ++++  v+eL+       a v+fd+ + g+l+l +e++h+ +Rilh ad tG+ +++ ++k+a  +p + +  ++ ++d++ e+  +vGv + ++   ++     ++  vla+GGlg +y++ tnp+  ++ G  iala raGv+++dle+vqFhPt l+ ++  rfL+tea+RGeGaiL d +G+ f++d+hp GeLapRDivar +++e  k++++     flD+ + +a  ++ rFPti ++l k G+d+ r+++Pv+Paahyt+GG+s+d+ grt+++GLYa+Ge+a+tGlhG nRlas sLLe+lvfGas+a  i +++  +          d+  s+  d+   +l++++ +++ +r+v+   + r+++w+++g+vr+ + L +a+  l +++ e  el      le++   + a   + v ++  + + s G+hy
  MMETSP1061-20121228|13338_1  58 RLLVVGSGVAGSAAALVAAETYRipVTLLFAGgVPQDCNSWWAQGGIIYRnYdpASGDSAESLAKDIHRAGAGLCADDAVRKVSEEGPDRVKELLLnakeafANVPFDKTQDGELSLCLEASHAAPRILHYADHTGAIITDHITKAAARHPLITMQPNTLVTDIVREEDLCVGVATLDRstgQRNIEYATRGTVLASGGLGGIYEHSTNPAgfNALGSSIALAKRAGVQMQDLEYVQFHPTSLCIPNEARFLLTEALRGEGAILRDANGRAFAKDFHPDGELAPRDIVARGVFAENLKSDDPsvhNAFLDITHRDAdwLHARFPTIQSHLSKRGLDLGRDHLPVTPAAHYTCGGVSTDMQGRTSLEGLYAAGEAARTGLHGGNRLASTSLLEGLVFGASVADFIGASERGRelqeislrrLDSRRSPEFDNnmAMLDAKKKETVTNRAVQllgQVRRIMWNHVGLVRTPSGLATAVEALSDIQAEATELheiypsLETSGARDAAcagEGVAIASAANHQSAGTHY 583
                  689********************88898887736689*********986523225689*********************************999751222224699**********************************************************************99966433333567889*****************84457899*****************************************************************************9999999444569*****99999*********************************************************************************9987765544332212222223333333333310344444445556666543337899***************************999997777876666555554222567777777788888888 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  272.8   0.0   2.2e-84   1.1e-81       3     479 ..      60     545 ..      58     583 .. 0.87

  Alignments for each domain:
  == domain 1    score: 272.8 bits;  conditional E-value: 2.2e-84
    TIGR01812   3 vivGaGlAGlraAveaakkg..lkvaviskvyptRsHsvaAqGGiaaalanvddddsvelhayDtvkGsDyladqdavellvkeapeavlel.....ek.mGvpfsRledgriaqRpFGgaskeRtcyaaDktGhallhtlyeellkl.gveifeeyfvldliledkevkGvvaidlktgev.vvlrakavvlatGGagrvyktttnavivt..GdGlaialragvplkdmEfvqfHPtgla...ksgiLitEgaRGeGgyLvnkeGeRfmeryaPeklelapRDvvsralvteireGrgveseakdyvyldlrhlgeekieerlpqirelakkfagvDpvkeliPvrPtaHYsmGGietdkkGevilenesivkGlfaaGEaacvsvHGanRLGsnsllelvvfGriagealaeavkkakvdea...kleeeavkkeekllellkee..ekgeeevakireelketmednvgvfRdeellkkavkeleelkekkkk 479
                  ++vG+G+AG  aA+ aa++     + + +   p+ + s  AqGGi     + +++ds e  a D  + +  l+ +dav+ + +e+p+ v el     e+   vpf +++dg+++     ++  +R  + aD+tG  +   + +++ ++  ++++ ++ v+d+++e++ + Gv  +d +tg+  + + ++++vla+GG g +y+++tn +  +  G  +a+a ragv ++d+E+vqfHPt+l    ++  L+tE+ RGeG++L++++G  f +++ P+  elapRD+v+r +  e ++    +    +  +ld++h  ++ +++r+p+i+   +k  g+D  ++ +Pv P+aHY+ GG++td++G++       ++Gl+aaGEaa   +HG nRL s slle +vfG +++  +    + ++ +e+   +l+++   + ++++++l  +  e+ +++  ++  +++++m+++vg+ R+++ l +av+ l++++ + ++
  MMETSP1061-20121228|13338_1  60 LVVGSGVAGSAAALVAAETYriPVTLLFAGGVPQDCNSWWAQGGIIYRNYDPASGDSAESLAKDIHRAGAGLCADDAVRKVSEEGPDRVKELllnakEAfANVPFDKTQDGELSLCLEASHAAPRILHYADHTGAIITDHITKAAARHpLITMQPNTLVTDIVREEDLCVGVATLDRSTGQRnIEYATRGTVLASGGLGGIYEHSTNPAGFNalGSSIALAKRAGVQMQDLEYVQFHPTSLCipnEARFLLTEALRGEGAILRDANGRAFAKDFHPD-GELAPRDIVARGVFAENLKSDDPS---VHNAFLDITHRDADWLHARFPTIQSHLSK-RGLDLGRDHLPVTPAAHYTCGGVSTDMQGRTS------LEGLYAAGEAARTGLHGGNRLASTSLLEGLVFGASVADFIGASERGRELQEIslrRLDSRRSPEFDNNMAMLDAKkkETVTNRAVQLLGQVRRIMWNHVGLVRTPSGLATAVEALSDIQAEATE 545
                  89***********9999987633345567889**************99999999***********************************99866554332479*********************************************99******************************872568889*****************9776542278888999*******************63336889***************************8.59**************99876544...5789*******************987655.8*************************988877......89*********************************99988766655555544000444555555555565555440044567788999******************************987654 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.3   0.0   1.6e-62   8.3e-60       6     488 ..      60     545 ..      55     556 .. 0.84

  Alignments for each domain:
  == domain 1    score: 200.3 bits;  conditional E-value: 1.6e-62
    TIGR01816   6 vvvGaGGaGlraalelakeglktavvtklf....PtrshtvaaqGGisa.algnveeddwewhlydtvkGsdylgdqdaieymckeapeavlel.....ek.mGlPfsrteeGkiyqrkfGGqtkdfGkaaveracaaadrtGhallhtlyqqslkadtsffv.eyfaldliledgevrGvialeletGeihv.frakavvlatGGaGriyasttn..altltGdgvgivlraGlPlqdlefvqfhPtGia...gaGvlitegvrGeGGillnaeGerfmeryaPtikdlasrdvvarsmvleireGrGvGkekdhvylkldhlgeevleeklpgiselaktfagvdpvkdpipvlPtvhylmGGiptnlkGqvlrdadgndsiveGlyavGeaacvsvhGanrlGtnslldlvvfGraaglslaelikegsdvkelkenae........eesvkrldklraaegkervaelrkelqksmqnhvavfrteevlkkgvekiselkerlkr 488
                  +vvG+G aG  aal +a++ +++  vt lf    P    +  aqGGi       +  d+ e    d  + +  l+  da+  +++e+p+ v el     e    +Pf++t++G +               a+ r    ad tG  + + + +++ ++    ++ +  ++d+++e+  ++Gv +l+  tG+  + + ++ +vla+GG G iy  +tn   + + G  ++++ raG+ +qdle+vqfhPt +    +a  l+te++rGeG il++a+G  f   + P   +la+rd+var +  e ++     ++  + +l+++h  ++ l++++p i+       g+d  +d +pv+P++hy+ GG++t+++G++         ++eGlya+Geaa   +hG nrl + sll+  vfG + ++ +  + + g +++e++            ++ + +ld  ++++ ++r+ +l  ++++ m nhv++ rt + l+ +ve +s+++ + ++
  MMETSP1061-20121228|13338_1  60 LVVGSGVAGSAAALVAAET-YRIP-VTLLFaggvPQDCNSWWAQGGIIYrNYDPASGDSAESLAKDIHRAGAGLCADDAVRKVSEEGPDRVKELllnakEAfANVPFDKTQDGELSLCLEA-------SHAAPRILHYADHTGAIITDHITKAAARHPLITMQpNTLVTDIVREEDLCVGVATLDRSTGQRNIeYATRGTVLASGGLGGIYEHSTNpaGFNALGSSIALAKRAGVQMQDLEYVQFHPTSLCipnEARFLLTEALRGEGAILRDANGRAFAKDFHPD-GELAPRDIVARGVFAENLKSD--DPSVHNAFLDITHRDADWLHARFPTIQSHL-SKRGLDLGRDHLPVTPAAHYTCGGVSTDMQGRT---------SLEGLYAAGEAARTGLHGGNRLASTSLLEGLVFGASVADFIGASER-GRELQEISLRRLdsrrspefDNNMAMLDAKKKETVTNRAVQLLGQVRRIMWNHVGLVRTPSGLATAVEALSDIQAEATE 545
                  79************99988.5543.45555444489999999****97516677889**********************************99855544432469********99754332.......237899***********************976665277899********************9876266789*************99984336778**************************95344799****************************8.58************9988766..5777889*******************7643.3469***************************75.........569*********************************9998877666.56655554333200001111345566777777788889999********************************987665 PP

>> TIGR01176  fum_red_Fp: fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  176.0   0.1   5.1e-55   2.6e-52       5     483 ..      58     541 ..      54     550 .. 0.86

  Alignments for each domain:
  == domain 1    score: 176.0 bits;  conditional E-value: 5.1e-55
    TIGR01176   5 diavigaggaglraaiaaaeanphlevaliskvypmrshtvaaeggsaavikd...edsldehfhdtvaggdwlceqdvveyfvaeapkelvql.....ekw.gcpwsrkedgevnvrrfggmkvertwfaadktgfhllhtlfqtslkysqikrldeyfvvdllvddgrvrglvaielaegelv.tikadavvlatggagrvyrfntn.ggi.vtgdgmalalragvplrdmefvqyhptgl..p.gtgilltegargeggilvnkdgyrylqdyglgketplgepknkymelgprdkvsqafvheqrkgntidtplgdvvyldlrhlgeellderlpfice.lakayvnvdpvkelipvrpvvhytmggietdincetrikglfavgecasvglhganrlgsnslaelvvfgrlage..kaaeraaeakksnesaieaqakavedrleallsqeg....geniakiraemgatleegagiyrdeellqktidklaelke 483
                   + v+g+g ag  aa+ aae+       l +   p    +  a+gg      d    ds +  ++d    g  lc +d+v    +e p  + +l     e +   p+ + +dge+++         r    ad+tg  +   + + + +++ i+   + +v+d++ ++    g+ +++ ++g+   +  +   vla+gg g +y+++tn +g    g  +ala ragv ++d+e+vq+hpt l  p  +  llte+ rgeg il + +g  + +d+      p         el prd v++  + e+ k    d p  +  +ld+ h  ++ l++r+p i+  l+k   ++d  ++ +pv p++hyt gg+ td+++ t ++gl+a+ge+a  glhg nrl s sl e +vfg+   +   a+er  e ++   + ++++   + d   a+l+ +      ++  ++  ++   + + +g+ r++  l  +++ l++++ 
  MMETSP1061-20121228|13338_1  58 RLLVVGSGVAGSAAALVAAETYRIPVTLLFAGGVPQDCNSWWAQGGIIYRNYDpasGDSAESLAKDIHRAGAGLCADDAVRKVSEEGPDRVKELllnakEAFaNVPFDKTQDGELSLCLEASHAAPRILHYADHTGAIITDHITKAAARHPLITMQPNTLVTDIVREEDLCVGVATLDRSTGQRNiEYATRGTVLASGGLGGIYEHSTNpAGFnALGSSIALAKRAGVQMQDLEYVQFHPTSLciPnEARFLLTEALRGEGAILRDANGRAFAKDFH-----P-------DGELAPRDIVARGVFAENLKS---DDPSVHNAFLDITHRDADWLHARFPTIQShLSK--RGLDLGRDHLPVTPAAHYTCGGVSTDMQGRTSLEGLYAAGEAARTGLHGGNRLASTSLLEGLVFGASVADfiGASERGRELQEISLRRLDSRRSPEFDNNMAMLDAKKketvTNRAVQLLGQVRRIMWNHVGLVRTPSGLATAVEALSDIQA 541
                  578*****************98766666778899************99888773336999999*********************999865544422223444268*****************************************************************************86515667899***************95344156999**********************9833323679************************95.....5.......348**************9997...689999********************9861544..68999************************************************************9877633689999999999988887776665554444444333111366777888999999*******************9999885 PP

>> TIGR01811  sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.6   0.0     9e-46   4.6e-43       1     507 [.      59     547 ..      59     600 .. 0.82

  Alignments for each domain:
  == domain 1    score: 145.6 bits;  conditional E-value: 9e-46
    TIGR01811   1 vivvGtGlaGlsaaiklael.GydvklfsyqdavrrahsiaaqGGinaaknkkndgdsvyrlfddtvkGGdfraresnvkrlaeasveiidll..da....lGvpfareygGlldtrsfGGvqvsrtfyargqtGqqlllaldealrrqiaaGlvelyerrelldiivvdedrarGivarnlvtgele.tfsadavilatGGygnvfylstnamnsn..asavarayekGayfanpefiqihPt..aiPvdgefqskltlmseslrndGriWvpkeksddrdankipedkrdyflerkyPafGnlvPrdiasraikevcdegkgvgngenavyldlsdaierlgrkeleakygnlfeiyekivgddPykvPmkifPavhytmGGlwvdydemttvpGlfaaGeadfs.dhGanrlGansllsalvdGlvvlPatienylgleksaedldedapvfekalaeeqerldkllkvdGkenadklhrelGeiltesvgvsreeekllkalekieelreefkkri 507
                  ++vvG+G+aG++aa  +ae+  ++v+l+     ++ + s  aqGGi   +   + gds+  l +d  + G  ++ +  v++++e+ ++ ++ l  +a      vpf ++++G l           r  +   +tG  +   +++a      + l+++  ++ + di+  +ed + G+ + +  tg+ + ++++   +la+GG g ++  stn    n  +s++a a ++G+   + e++q+hPt  +iP +        l++e+lr++G i                  +   f    +P+ G+l Prdi +r ++   ++ k   ++ + ++ld+++++     + l+a++  + +   k  g d  +  + + Pa hyt GG+ +d +  t+++Gl+aaGea  +  hG+nrl + sll++lv G  v  +      g+e +  +l         +  ++ + ld  +k   ++ a +l  ++  i++++vg++r+ ++l  a+e ++++++e ++  
  MMETSP1061-20121228|13338_1  59 LLVVGSGVAGSAAALVAAETyRIPVTLLFAGGVPQDCNSWWAQGGIIYRNYDPASGDSAESLAKDIHRAGAGLCADDAVRKVSEEGPDRVKELllNAkeafANVPFDKTQDGELSLCLEASHAAPRILHYADHTGAIITDHITKA---AARHPLITMQPNTLVTDIVR-EEDLCVGVATLDRSTGQRNiEYATRGTVLASGGLGGIYEHSTNPAGFNalGSSIALAKRAGVQMQDLEYVQFHPTslCIPNE-----ARFLLTEALRGEGAILRDA--------------NGRAFAKDFHPD-GELAPRDIVARGVFA--ENLKSDDPSVHNAFLDITHRDA----DWLHARFPTIQSHLSK-RGLDLGRDHLPVTPAAHYTCGGVSTDMQGRTSLEGLYAAGEAARTgLHGGNRLASTSLLEGLVFGASVADFIGASERGRELQEISLRRLDSRRSPEFDNNMAMLDAKKKETVTNRAVQLLGQVRRIMWNHVGLVRTPSGLATAVEALSDIQAEATELH 547
                  58***********99999873578999999999*************99888899*******************************9986664322332222479************99999999***99999***8765555555...55557888877776666655.556*************9773688899*****************87665126899999******************4455655.....56799********997544..............445566777787.*************96..678888999999*********9....9******998766555.4667777788899****************************987637******************99998887777787777666665555566666666777888888888888999999999*************************999877644 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.7   0.0   2.8e-21   1.4e-18       3     293 ..      60     356 ..      58     379 .. 0.76
   2 !   43.1   0.3   9.4e-15   4.8e-12     380     444 .]     401     459 ..     398     459 .. 0.89

  Alignments for each domain:
  == domain 1    score: 64.7 bits;  conditional E-value: 2.8e-21
    TIGR01813   3 vvvGsGlAGlsaaleakkaglaevvvleKapviGGNsaiaaggmnaaktkiQkk.kgieDskelfikdtlkggrgindpelvkklaeesadavd.wlkd......evklkldk.....laqlGGhsvkRahrpkggaasGaeivqklskkakkeg.velrlnskvedlikddqgqvtGvkvke.kgkkiki.kaakaVvlatGGfgsnkelikkydPelkelestnqkgatgdglkvlekigaalvdldeiQahpt..aspdegkfliaealrglgailvnpkdGeRFvn......ElatRdtvsdailaqrgke 293
                  +vvGsG+AG +aal a ++++++v +l    ++GG    + ++ +  +    +      Ds+e + kd  ++g g    + v+k++ee+ d v+ +l +      +v +++++     l     h ++R +  ++  ++Ga i+++++k+a     ++++ n+ v+d++++++   +Gv   + ++++++i  a ++ vla+GG g      ++++P        +   a g  + +++++g ++ dl+++Q hpt  + p+e +fl++ealrg gail +  +G+ F +      Ela Rd v+    a++ k+
  MMETSP1061-20121228|13338_1  60 LVVGSGVAGSAAALVAAETYRIPVTLL----FAGGVPQDCNSWWAQGGIIYRNYdPASGDSAESLAKDIHRAGAGLCADDAVRKVSEEGPDRVKeLLLNakeafaNVPFDKTQdgelsLCLEASHAAPRILHYAD--HTGAIITDHITKAAARHPlITMQPNTLVTDIVREED-LCVGVATLDrSTGQRNIeYATRGTVLASGGLGG--IYEHSTNP--------AGFNALGSSIALAKRAGVQMQDLEYVQFHPTslCIPNEARFLLTEALRGEGAILRD-ANGRAFAKdfhpdgELAPRDIVARGVFAENLKS 356
                  8***********************999....6677666666666555554444303457******************************9988633322222222333444331111133346799999999999..**********99876665489999*********998.8889987664555566525889**********9..23333444........4567999***********************955678999*****************.9*****964444457888888888777766655 PP

  == domain 2    score: 43.1 bits;  conditional E-value: 9.4e-15
    TIGR01813 380 vtPkvHytmGGvkintkaeVldensekpikgLfAaGEvt.GgvHGanRLggnaildiivfGriaae 444
                  vtP+ Hyt GGv ++ +       + + ++gL+AaGE++  g+HG nRL+++++l+ +vfG  +a+
  MMETSP1061-20121228|13338_1 401 VTPAAHYTCGGVSTDMQ-------GRTSLEGLYAAGEAArTGLHGGNRLASTSLLEGLVFGASVAD 459
                  89***********9865.......4568*********86479*******************99885 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00034      0.17     204     233 ..      48      77 ..      28      96 .. 0.77
   2 !    6.3   0.0    0.0013      0.66     464     488 ..     409     433 ..     404     437 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00034
    TIGR03140 204 eeaeeekekydvlvvGgGPagaaaaiyaar 233
                   +++++ ++  +lvvG+G ag+aaa+ aa 
  MMETSP1061-20121228|13338_1  48 PSNDTQEKNDRLLVVGSGVAGSAAALVAAE 77 
                  3445555566699************99884 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0013
    TIGR03140 464 rGeividergrtsvkGifaaGdvtt 488
                   G + +d +grts++G++aaG+++ 
  MMETSP1061-20121228|13338_1 409 CGGVSTDMQGRTSLEGLYAAGEAAR 433
                  68899****************9875 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.3   0.2     0.006       3.1       3      22 ..      59      78 ..      57      92 .. 0.82
   2 !    7.1   0.0   0.00086      0.44     253     277 ..     410     434 ..     402     461 .. 0.78

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.006
    TIGR01292  3 viiiGaGpaGltaaiYaara 22
                 ++++G+G aG +aa+ aa +
  MMETSP1061-20121228|13338_1 59 LLVVGSGVAGSAAALVAAET 78
                 78************988765 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00086
    TIGR01292 253 gyivvdeemrTsveGvfaaGDvrdk 277
                  g + +d++ rTs+eG++aaG+  ++
  MMETSP1061-20121228|13338_1 410 GGVSTDMQGRTSLEGLYAAGEAART 434
                  66899***************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.68
# Mc/sec: 1168.49
//
Query:       MMETSP1061-20121228|13343_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|13341_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-104  345.8   0.0   3.6e-104  345.3   0.0    1.2  1  TIGR01258 pgm_1: phosphoglycerate mutase 1 family
    5.9e-19   66.0   0.0    8.1e-13   46.0   0.0    2.1  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    6.6e-10   36.6   0.0    1.7e-08   32.0   0.0    2.1  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
      1e-05   23.3   0.0    2.1e-05   22.2   0.0    1.4  1  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR01258  pgm_1: phosphoglycerate mutase 1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  345.3   0.0  3.5e-107  3.6e-104       2     245 .]      44     296 .]      43     296 .] 0.96

  Alignments for each domain:
  == domain 1    score: 345.3 bits;  conditional E-value: 3.5e-107
    TIGR01258   2 klvlvrhGeseWnkenlftGWvdvelsekGkeeakeagkllkeeklefdvaytsllkraiktlnivldeldqlwlpvkksWrlnerhyGalqGldkaetaekyGeeqvkiwrrsfdvsPpeldekderspkkdrryaklkkkelPlteslkdtvervlPywedeiapelksgkrvlivahGnslralvkhleklsdeeilelniPtgiPlvyeldeelkpvkk.........kylgdeeavaaaaeavanqGk 245
                   lvlvrhGes Wn++n+ftGW+d  lsekG +ea+ +++llk+++++fdvayts l+raiktl+i+l+e++ +++p++ +WrlnerhyG lqGl+k+et++k+G++qv +wrrs+d++Ppe d ++e++p +d+ ya++ k++lP+teslk t +r++  w+++++p +ksgk+v+i+ahGn+lralvkhl+++s+++i  lniPtg+Plvyeld+++kp+ +         +ylgd e+v+++  ava+q k
  MMETSP1061-20121228|13341_1  44 TLVLVRHGESTWNDQNRFTGWYDCPLSEKGLKEAHDGATLLKDAGYTFDVAYTSTLQRAIKTLWIILEEMHLMYIPIVNTWRLNERHYGGLQGLNKQETVDKHGKDQVLVWRRSYDIPPPECDDDSEYYPANDPMYADVPKEDLPKTESLKLTEDRFMVEWDEKLVPLIKSGKKVIIAAHGNTLRALVKHLDGISKDDITGLNIPTGVPLVYELDDDMKPIAQadaiapltgMYLGDLEKVKERIGAVAAQTK 296
                  59************************************************************************************************************************************************************************************************************************9986444444444379****************986 PP

>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   7.9e-16   8.1e-13       1     102 [.      45     154 ..      45     166 .. 0.84
   2 !   18.0   0.0   3.1e-07   0.00032      95     171 ..     171     250 ..     165     254 .. 0.87

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 7.9e-16
    TIGR03162   1 lyLiRHgevevnkgkcY.GqtDvpLaekgeeqaaalrekl..edvkfdavvsSplsRcrelAellaeklkl...piekddrLrEmdfGdwEgksydeisekyp..eldaw 102
                  l+L+RHge  +n ++++ G  D+pL+ekg ++a+  ++ l  + ++fd  ++S l+R+ ++  ++ e+ +l   pi    rL+E ++G  +g + +e ++k+   ++  w
  MMETSP1061-20121228|13341_1  45 LVLVRHGESTWNDQNRFtGWYDCPLSEKGLKEAHDGATLLkdAGYTFDVAYTSTLQRAIKTLWIILEEMHLmyiPIVNTWRLNERHYGGLQGLNKQETVDKHGkdQVLVW 154
                  78*******************************9999998556789****************999987765222668889*************99999998876344444 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 3.1e-07
    TIGR03162  95 kypeldawakdlaharvpgGEsvadfsqRveefleelake...ekenvlivtHgGvirallahllglpleqllsieveyg 171
                   yp+ d  ++d+ +  +p+ Es++  + R +  ++e +     ++++v+i +Hg ++ral+ hl g++ ++++ +++++g
  MMETSP1061-20121228|13341_1 171 YYPANDPMYADVPKEDLPKTESLKLTEDRFMVEWDEKLVPlikSGKKVIIAAHGNTLRALVKHLDGISKDDITGLNIPTG 250
                  5667888899999****************998888776666878999*********************999998888776 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.0   0.0   1.7e-11   1.7e-08       1      94 [.      44     141 ..      44     154 .. 0.85
   2 ?    2.5   0.0     0.018        18     114     173 ..     188     244 ..     181     256 .. 0.80

  Alignments for each domain:
  == domain 1    score: 32.0 bits;  conditional E-value: 1.7e-11
    TIGR03848   1 tvllvrhgrstantaktLaGrtpGveLderGreqaaalaerladl..piaaivssPlercretveaiaear...glevavderltevdYGdWtGrelke 94 
                  t++lvrhg st n +++++G+ +   L+e+G + a++ a+ l+d   + +  ++s l+r+ +t+  i+e++    ++++   rl+e +YG  +G + +e
  MMETSP1061-20121228|13341_1  44 TLVLVRHGESTWNDQNRFTGWYD-CPLSEKGLKEAHDGATLLKDAgyTFDVAYTSTLQRAIKTLWIILEEMhlmYIPIVNTWRLNERHYGGLQGLNKQE 141
                  89********************7.89*************99987522678899****************99444445556779********99977655 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.018
    TIGR03848 114 PgGealaevqaravaavreldarleeehgpdavwvavshgDviksvladalGlhlDlfqr 173
                  P+ e+l+ ++ r +    e+d++l    ++++  ++ +hg+ +++++ +  G+  D    
  MMETSP1061-20121228|13341_1 188 PKTESLKLTEDRFM---VEWDEKLVPLIKSGKKVIIAAHGNTLRALVKHLDGISKDDITG 244
                  77777777777764...58999999999999999999********999888887776655 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.1e-08   2.1e-05       3      67 ..      45     113 ..      43     124 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.1e-08
    TIGR00249   3 lylmrHGeAkekaa....sDkeRqLtkkGkdeaervaqwLkkagveldrilvSplvRAeqtaeivadal 67 
                  l l+rHGe   +++       + +L++kG +ea+  a  Lk+ag  +d  ++S l RA +t+ i+ +++
  MMETSP1061-20121228|13341_1  45 LVLVRHGESTWNDQnrftGWYDCPLSEKGLKEAHDGATLLKDAGYTFDVAYTSTLQRAIKTLWIILEEM 113
                  67999**9987665455455789**************************************99987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1698.64
//
Query:       MMETSP1061-20121228|13344_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.3e-129  428.7   0.0   1.2e-128  427.5   0.0    1.5  1  TIGR00414 serS: serine--tRNA ligase
    8.5e-08   29.3   0.1    2.3e-07   27.9   0.0    1.6  2  TIGR00408 proS_fam_I: proline--tRNA ligase
    1.6e-06   25.1   0.0    6.8e-06   23.0   0.0    1.8  2  TIGR00409 proS_fam_II: proline--tRNA ligase
    1.1e-05   22.4   0.0      2e-05   21.5   0.0    1.3  1  TIGR00418 thrS: threonine--tRNA ligase
    0.00011   18.6   0.0    0.00056   16.3   0.0    1.9  2  TIGR00415 serS_MJ: serine--tRNA ligase
    0.00048   15.7   3.8    0.00064   15.3   2.6    1.0  1  TIGR00606 rad50: rad50
  ------ inclusion threshold ------
      0.014   10.9   8.4      0.019   10.5   5.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  427.5   0.0    2e-131  1.2e-128       3     411 ..      61     517 ..      59     518 .] 0.83

  Alignments for each domain:
  == domain 1    score: 427.5 bits;  conditional E-value: 2e-131
    TIGR00414   3 dlkllrenlelvkeklkarglsvei..dleklselddklkkllskieelqkkrnelskeigk.......kkaekkdkieelkkelkelk.......eeleeleaelkeleeeleekllkipnlvaesvpvgkdeednlevkkegek........ksfdfkpkdHvellekldlldferavkvagsrfvvlknkgaklerALinfmLdlle.kkgysevvvPvlvnkellsgtgqlpkfeedifkveded.......lyLiaTaEvplanlhaneileeeelpikyaavspcFRkEAGsaGkdtkGliRvHqFeKvElvkfvkpeesaeeleeliedaekilkeLelPyrvvnlcsgdlgfsaakkyDlEvWlpaqnkYrEisScSnctdfQarrlkiryk............ekkkkk.....kkyvhtlNgtalavgRvlvailEnyqeedGkvevP 411
                  d++++ ++ e+v +++k+r++s e    ++ + +l++k+++l+++ ++  ++r+e s ++g+       k++++++  ee  +e++++k       e  +++++el+ +++ ++++l  ipnl++++vp g de++n  v+++g+          + df+pk H +++  l+++  e+avk++g+rfv+l + +a+lerAL++f Ldl++ k+gy+ev+vP++v ++ l+gt+qlpkf+ed+f+v  e         +Li+TaEvp++nlha+ il+e++lp+ y+a +pcFR+EAGs G+dtkGliR HqF+KvElvk++ ++ s ee+e l+++ae+ l++LelPyr+v lcsgd+gfsa  +yDlEvWlp++ +YrEisScSn+ dfQarr+  ry+            + kkkk      ++ ht+Ng++lavgR+lva+lEnyq++dG+v vP
  MMETSP1061-20121228|13344_1  61 DIRTIVSDTEMVLSHMKSRRASDEAleAVNTIASLQSKRVALIQERDNFLNQRKEASAQVGQlmrklnsKNEDDEADKEEAAAEVEKQKelsaaaaEGAQKADEELDSIQKVMDDMLAGIPNLLDDKVPDGDDETENEVVSEWGDVgalpkkleWTEDFEPKWHDDVASGLNGYQSEAAVKMSGTRFVALSGPIARLERALAMFFLDLHTgKHGYTEVSVPYIVGRSALEGTSQLPKFQEDLFAVTPEShtcngedAFLIPTAEVPVTNLHADSILDEKDLPLSYVAWTPCFRAEAGSSGRDTKGLIRTHQFQKVELVKITTADASDEEHELLTSHAEACLQALELPYRKVRLCSGDIGFSARHCYDLEVWLPGAGEYREISSCSNTGDFQARRMALRYRpepppapeggdgK-KKKKpkkmkPELCHTINGSGLAVGRTLVAVLENYQRADGSVVVP 517
                  6666667777777777777776553114556666777777777777777777777777776655444322222222233344444443311111114567788999999999**************************88888876666655656889****************************************************9*********************************998877888888***********************************************************************************************************************************************84444333333221.222233344689*******************************9 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.3      0.48   2.8e+02     396     396 ..     120     120 ..      51     187 .. 0.49
   2 !   27.9   0.0   3.9e-10   2.3e-07      53     191 ..     271     410 ..     253     437 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.48
    TIGR00408 396 v 396
                  v
  MMETSP1061-20121228|13344_1 120 V 120
                  2 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 3.9e-10
    TIGR00408  53 deieveevyfPllipeselekEkeHikGFepEvylitqaGkkkLeeklalRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEk....khtrPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPvlv 191
                   + +  ev +P ++  s le   + +  F+++++ +t   ++   e   l Pt+E+ + nl++  +   +dLPl +  ++  fR+E     + t+ l+Rt  f  +    +  t+ +a +e  ++l   +e   + L +P+ +
  MMETSP1061-20121228|13344_1 271 GKHGYTEVSVPYIVGRSALEGT-SQLPKFQEDLFAVTPESHTCNGEDAFLIPTAEVPVTNLHADSILDEKDLPLSYVAWTPCFRAEAgssgRDTKGLIRTHQF--QKVELVKITTADASDEEHELLTSHAEACLQALELPYRK 410
                  5568899999999999999875.56788**********************************************************7555578*******975..77778888889999988888888888888888888865 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.6      0.28   1.7e+02     292     334 ..     100     144 ..      41     199 .. 0.52
   2 !   23.0   0.0   1.2e-08   6.8e-06      63     240 ..     272     462 ..     268     511 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.28
    TIGR00409 292 vallvrgddelnevkaknelevaevlelat...eeeleakiaakkd 334
                  val+   d+ ln++k   + +v +++ + +   e+    k++a  +
  MMETSP1061-20121228|13344_1 100 VALIQERDNFLNQRKEASA-QVGQLMRKLNsknEDDEADKEEAAAE 144
                  3333333333333333333.22222222110001112222211111 PP

  == domain 2    score: 23.0 bits;  conditional E-value: 1.2e-08
    TIGR00409  63 kagaievllpalqsaelWqesgRwdkygeellrlkDr....kerefvLgpthEEvitdlvkneiksYkqlPvnlYqiqtKfRDEi....RPRfGllRgREFimKDaYsFhsdeeslkatyqkldeaYkkifsrlgldfraveADsGaiGGskskEFvv...laesGED.tivvse.esdyaa.nielaealk 240
                  k+g  ev++p ++  +  + +  + k+ e+l+++       ++ +  L pt E  +t+l ++ i   k+lP+     +  fR E     R   Gl+R+  F   +     ++++  +++++ l +  +  ++ l l++r v+  sG+iG s+ + + +   l  +GE  +i +++ ++d+ a  + l ++ +
  MMETSP1061-20121228|13344_1 272 KHGYTEVSVPYIVGRSALEGTSQLPKFQEDLFAVTPEshtcNGEDAFLIPTAEVPVTNLHADSILDEKDLPLSYVAWTPCFRAEAgssgRDTKGLIRTHQFQKVE-LVKITTADASDEEHELLTSHAEACLQALELPYRKVRLCSGDIGFSARHCYDLevwLPGAGEYrEISSCSnTGDFQArRMALRYRPE 462
                  68889999999999999999999999999999986431222578999*************************************766668889********7555.55556677779999********************************9988644458899995378888768899884454444433 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   3.5e-08     2e-05     203     351 ..     257     413 ..     243     420 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.5e-08
    TIGR00418 203 irklledfvrek.llkrgyeevetPiladlelweisghldkykermfrfkeee....ekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEk..sGe.LvGLkRvRgftldDaHifctedQikeEiknalrliqkvlkklglseekvel 351
                  + + l+ f+ +  + k gy ev+ P ++ ++  e +  l k++e+ f ++ e+     ++ +l p + +    +  +s++  +dLPl+ +  + ++R E+  sG   +GL R  +f+      + t+d  +eE +   + +   l++l+l   kv+l
  MMETSP1061-20121228|13344_1 257 LERALAMFFLDLhTGKHGYTEVSVPYIVGRSALEGTSQLPKFQEDLFAVTPEShtcnGEDAFLIPTAEVPVTNLHADSILDEKDLPLSYVAWTPCFRAEAgsSGRdTKGLIRTHQFQKVELVKITTADASDEEHELLTSHAEACLQALELPYRKVRL 413
                  55666666555505589******************************998776666556777888888888999*************************744774489*************99999**99999999999999899988887777766 PP

>> TIGR00415  serS_MJ: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.07        41     217     279 ..     250     312 ..     238     332 .. 0.79
   2 !   16.3   0.0   9.5e-07   0.00056     315     396 ..     323     408 ..     314     439 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.07
    TIGR00415 217 ytpkitalfraleeliveevvkklgfveclfpklipleimykmryleglpegmyyvsapkrep 279
                   + +i+ l ral  ++++    k g+ e+  p ++    ++    l  + e ++ v++ +   
  MMETSP1061-20121228|13344_1 250 LSGPIARLERALAMFFLDLHTGKHGYTEVSVPYIVGRSALEGTSQLPKFQEDLFAVTPESHTC 312
                  467899***************************999999998888888888888888766554 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 9.5e-07
    TIGR00415 315 qcepfyqflegevvd.vdkpvkffdrsgwt..yrweagga....kgldrvneflrvelvwlaepeeveeirdktlklaedlaekleley 396
                     p  ++  + ++d +d+p+ +     wt  +r eag +    kgl r ++f++velv ++  +  +e  +    +ae   + lel y
  MMETSP1061-20121228|13344_1 323 AEVPVTNLHADSILDeKDLPLSYVA---WTpcFRAEAGSSgrdtKGLIRTHQFQKVELVKITTADASDEEHELLTSHAEACLQALELPY 408
                  5556677777788887899999875...54339999997544459************************99999999999999999987 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.6   1.1e-06   0.00064     837     974 ..      61     198 ..      49     232 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.1e-06
    TIGR00606 837 kldkvvskielnrkliedrqeqiqhlks..klnelkseklqlsealqrrqqleeqlvelskevqslireikdakeevsPlettlekllqekeeliskkeeskkiaedkvndikekvkniigyr.kdlekkiqdGkddylkd 974
                   ++++vs+ e+    ++ r+   + l++  ++  l+s+++ l   +q r+++ +q +e s +v +l+r+++ + e++  +++      ++++el     e  ++a+++++ i++ ++++       l +k+ dG d+   +
  MMETSP1061-20121228|13344_1  61 DIRTIVSDTEMVLSHMKSRRASDEALEAvnTIASLQSKRVAL---IQERDNFLNQRKEASAQVGQLMRKLNSKNEDDEADKEEAAAEVEKQKELSAAAAEGAQKADEELDSIQKVMDDMLAGIpNLLDDKVPDGDDETENE 198
                  578899999987777777766666665322677888888877...799****************************9999888888888888************************99876551557889*9*97776554 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.8   3.2e-05     0.019     853     965 ..      67     177 ..      34     186 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.2e-05
    TIGR02169 853 iekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkkelekve 965
                     e+  +++k +  + e+ e+ + ++ L++++  L +er++  ++ +e+  ++ +l  ++++k++  +  k++++a  e+ +el ++ +e+ +++  + +l+ ++k ++ + 
  MMETSP1061-20121228|13344_1  67 SDTEMVLSHMKSRRASDEALEAVNTIASLQSKRVALIQERDNFLNQRKEASAQVGQLMRKLNSKNEDDEADKEEAAAEVEKQKELSAAAAEGAQKA--DEELDSIQKVMDDML 177
                  555555566666667777777777888888888888888888888888888888888888888888888888888888888888887655555543..444555666655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       317  (0.0772794); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.31
# Mc/sec: 2205.50
//
Query:       MMETSP1061-20121228|13347_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|13345_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.048    9.1  36.0      0.064    8.7  25.0    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.049    9.1  40.6       0.16    7.4  26.8    1.8  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7  25.0   3.1e-05     0.064     687     927 ..      91     325 ..      81     338 .. 0.57

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 3.1e-05
    TIGR02169 687 LereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkere...eleaelrelekkkeeleaeiekkrkrlkelkakl 927
                   e+ +e+lq+e++r e + ++l+  l++++k++e++e+++ ++e + +++ +++  + ++ + + +  + ++  +++++++ ++ ++k  +++e+++d ++ +   +++++e+ l++  +e   +e+ ++++ ++ ++ + e++l e+e++e+q+  + + +  +++++  e   ++ + le+ lee + +vreLe+el  L+ + e   + + +  + e+++++++a++++++++++++k ++
  MMETSP1061-20121228|13345_1  91 VEEAEEALQRERARYEGERSKLEWLLENQRKQLEDLENDRREIEINGDQTLANAGRSIASRRIVIRG-AHAHVDINAMNSRKKRNKAKRVNVREKINDTDETYI--RMKRLESLLRDAIDE---NEKLTSQLLEQQHQYNAERNLYENEMREEQRMLDSFRDELHMERAYFE---TSRRMLERMLEEEQHKVRELEQELFMLHTQGEvfgHQQPQCDQHEEQRRQQQAQLQRQKEQQRQKKRQR 325
                  5566666777777777777777777777777777777777666555444333333333332222222.233445666667777777777777777776654443..333444444333333...333333333333333335566666666666666555555555555555...455578888999999999999999999887662223445666666677777777777666666666554 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   2.3   0.00091       1.9     893     945 ..      90     142 ..      80     149 .. 0.82
   2 ?    7.4  26.8   7.7e-05      0.16     681     900 ..     116     331 ..      97     340 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.00091
    TIGR02168 893 elreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqe 945
                  +++e+ e+l++e  ++e ++++le  le++r++l++le++  e+e++ +++++
  MMETSP1061-20121228|13345_1  90 SVEEAEEALQRERARYEGERSKLEWLLENQRKQLEDLENDRREIEINGDQTLA 142
                  56777788999999999999999999999999999999999999998888765 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 7.7e-05
    TIGR02168 681 ieeleeeieeleekiaelekelkelekel.eeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreelee 900
                  +e+ ++++e+le++ +e+e + +++  +  ++++   + +  +  +++ ++++++++ +r +++  +++e++++++++  +++  ++ l+++++e+e+ +++  e++ + +ae + +++e+ +++++l+++++el+ +++ +++    +++le+ +++ +++++ele+++  l  + e   +++ ++++ +e+ +++ ++l+ +k++++++ +++  +++ 
  MMETSP1061-20121228|13345_1 116 LENQRKQLEDLENDRREIEINGDQTLANAgRSIA--SRRIVIRGAHAHVDINAMNSRKKRNKAKRVNVREKINDTDETYIRMKRLESLLRDAIDENEKLTSQLLEQQHQYNAERNLYENEMREEQRMLDSFRDELHMERAYFET---SRRMLERMLEEEQHKVRELEQELFMLHTQGEVFGHQQPQCDQHEEQRRQQQAQLQRQKEQQRQKKRQRGGQYSG 331
                  3444555555555555555554433332202222..3333333444478999999999999999999*****************************9999***********************************999999996...45678889999999999999999999999999999999999988888888888888887777766666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       338  (0.0823988); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1084.20
//
Query:       MMETSP1061-20121228|13350_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   11.4   0.0       0.06   10.8   0.0    1.2  1  TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03061  pip_yhgE_Nterm: YhgE/Pip N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   1.5e-05      0.06      14      40 ..      85     111 ..      75     119 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.5e-05
    TIGR03061  14 ialiallliPllygglfLaalwdpygn 40 
                  + l +++++P+ly  +fL   +d+yg 
  MMETSP1061-20121228|13350_1  85 FGLNFIAFVPILYCQTFLGTEQDSYGS 111
                  45789********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 765.54
//
Query:       MMETSP1061-20121228|13351_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 514.76
//
Query:       MMETSP1061-20121228|13348_1  [L=902]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-66  222.3  22.3    1.8e-66  222.3  15.5    2.2  2  TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
  ------ inclusion threshold ------
      0.021   11.7   0.7      0.039   10.8   0.5    1.3  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00932  2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.3  15.5   8.8e-70   1.8e-66       1     275 []     236     507 ..     236     507 .. 0.98
   2 ?    1.3   0.8     0.021        42      56     116 ..     504     565 ..     504     576 .. 0.62

  Alignments for each domain:
  == domain 1    score: 222.3 bits;  conditional E-value: 8.8e-70
    TIGR00932   1 llaavlivllarrlripsvvgeliaGvilGpsglglisnselvnllaelGvilLlFliGLeldlerlkkllkkalgvgvlqvlvsfvllalllshllglklelavvigiilslsstavvvqvLkelnllktraGqlvlgalivqDlavvllLallillasvsaekekvalvllllkvllaflllvllvkyllrpvlrltaeadrselatalsLllvlgsalladllGlsmalGAFlAGvvlseseyrhkleeklepikygvliplFFisvGlsld 275
                  lla+++i +l++ ++ ++++g l++G++lGp g+gli++ + ++ laelG++++lF +G+el+lerl ++++ ++g+g+ q l s+v++a  ++ +lgl +++ vv+g +l+lss a+v+q+Lk+++ l +r+G++++g+l++qDlavv+lL++ ++la+ + ++ ++al  ++lk+ +a+  + ++++yll+p+++++a a+++e +  ++Ll vl ++ +++ lGls  lGAFlAGv+lse++yr ++e++++p++ g+l++lFF++vG ++d
  MMETSP1061-20121228|13348_1 236 LLATAVITPLCKMMGTSPILGFLASGMLLGPNGFGLINDLHTTEVLAELGIVFFLFEMGIELSLERLVSMKRDVFGLGLSQFLCSAVAIAG-VGKVLGLPANALVVLGGGLALSSSAFVLQLLKDKSQLASRFGKASFGVLLFQDLAVVPLLVVTPILAG-GGSGLAAALGSAVLKAGIALGSIAVAGRYLLNPLFKKVAGAQSQEAFLGVILLTVLSMSFMTEGLGLSNTLGAFLAGVLLSETKYRYQVEADIAPFR-GILLGLFFVTVGFEID 507
                  68999********************************************************************************665555.*******************************************************************8.89***********************************************************************************************.*************998 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.021
    TIGR00932  56 FliGLeldlerlkkllkkalgvgvlqvlvsf.vllalllshllglklelavvigiilslsst 116
                  F i L l +++l ++ + ++g+ +++ lv     la++ls  ++++++l +  g  ++ +++
  MMETSP1061-20121228|13348_1 504 FEIDLALIFSKLPAVSAIVFGIMIIKTLVLTlLSLAFGLSLSVSQQTGLILSQGGEFAFVAF 565
                  55777888889999999999999888777621344444444444444444444445555555 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.5   1.9e-05     0.039     165     229 ..     628     690 ..     619     701 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.9e-05
    TIGR03201 165 kkgdlviviGvGGvGgyavqvakalGaavvaidideeklemvkkaGadlilnpkdisarevkkai 229
                  + +d+++viG G vG  + ++ +      v+idid++k   +++  a l +   di  +ev +a+
  MMETSP1061-20121228|13348_1 628 ESDDFAVVIGYGAVGKVVCDLLDRKLVKYVGIDIDPKKA--IQARNAGLPVFYGDIGRQEVADAF 690
                  5699********************99***********95..555566666666777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (902 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.23s 00:00:00.57 Elapsed: 00:00:00.50
# Mc/sec: 2381.08
//
Query:       MMETSP1061-20121228|13352_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-19   67.4   0.0    3.2e-19   66.8   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    5.8e-13   46.3   0.0    4.4e-12   43.4   0.0    1.9  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    1.3e-12   45.2   0.0    2.4e-12   44.4   0.0    1.5  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B
    2.9e-05   21.0   0.1    5.2e-05   20.1   0.0    1.3  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.0   3.1e-22   3.2e-19      15     234 ..      53     303 ..      44     305 .. 0.77

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 3.1e-22
    TIGR02160  15 daveisfevPeelaedyrfepGqhltlka.eld...Ge..elrrsys.icdavadgeirvavkkieGGlfstw........aneeiraGdtlevmaPqGrftskldaer..............akhyvavaaGsGitPilaivktvla.aepkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsreerea..ellsGrldgeklkalldslie.vdevdeaflcGPaalvd.daedalkalGvdse 234
                  d++e  f +P +  +      Gqh++l+  e d   G+  ++ rsy+ + d ++ ge+ v vk+ + G+  ++          + ++ Gdt+++  P+G++++  +  +               ++++++a G+GitP+l +++ ++  +++  +++l+yan+++++++ ++el+ l   +p rf+l+  + r + +   +  +G + +e +++    l +   +  ++ lcGP  +++  +  +l+alG  ++
  MMETSP1061-20121228|13352_1  53 DTAEFVFGLPTP-DSVLGLPTGQHISLRFfETDketGKktQVMRSYTpVSDNTTLGEVAVVVKVYKAGVHPKFpdggkmsqHLDSLKIGDTVDIKGPKGHMEYLGNGGNywmkpigkpkvtkqCDQFIMIAGGTGITPMLQVANFMFRrSNDSVKVNLLYANQTEDDILVRKELEALATDFPDRFKLHYTVDRLPTDGswKYSEGFISKEMIENH--CLFNgSSKNTQVLLCGPPPMLKfACYPNLEALGFTKK 303
                  555555555555.33455667999999852333112332257899974778888999****999887766555222221112478*****************99888888999999***9998899******************99862577889**************************************9887622567899*99999874..4555145667899******998457889999998765 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   4.3e-15   4.4e-12     201     393 ..      89     300 ..      75     306 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 4.3e-15
    TIGR01941 201 veeetvrayslanypeekgiiklnvriatppfanaeippGkmssyifslkpGdkvtvsGpf.........Geffvk........dtdaelvfigGGaGmaplrshildllkrlkskrkisfwyGarskrevfyeedfdeleaendn.fkyhvalsdplped.nwtGytgfihnvlyenylkdhdapediefymcGpplm.naaviklledlGv 393
                   + +++r+y+  +     g + + v++    ++ +  + Gkms ++ slk Gd v ++Gp          G++++k         +  ++++i+GG+G++p+      +++r +   k+++ y  +++ +++ +++ + l++++++ fk h ++ d lp d  w+   gfi + + en+     + ++++  +cGpp m + a    le lG 
  MMETSP1061-20121228|13352_1  89 KKTQVMRSYTPVSDNTTLGEVAVVVKVYKAGVHPKFPDGGKMSQHLDSLKIGDTVDIKGPKghmeylgngGNYWMKpigkpkvtKQCDQFIMIAGGTGITPMLQVANFMFRRSNDSVKVNLLYANQTEDDILVRKELEALATDFPDrFKLHYTV-DRLPTDgSWKYSEGFISKEMIENHCLFNGSSKNTQVLLCGPPPMlKFACYPNLEALGF 300
                  4567788888888888888888888888777776555679********************72222233334577772222221122346899**********99999999**********************************7549***987.6677663799999***********99999***********986615577777777776 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   2.3e-15   2.4e-12      98     210 ..     174     295 ..     105     307 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 2.3e-15
    TIGR02911  98 kdkelvvvaggtgvapvkgvveyfaknskevkeldlivgfktredilfkedla....ewkekinlvltlde..aeeddkykvglvtkyiae.lklkd..ieevqvivvgppimlkftvkell 210
                  +  +++++aggtg++p+  v +++ + s++  +++l+   +t++dil +++l+    ++ ++++l  t+d   +++  ky +g ++k + e   l +   ++ qv++ gpp mlkf+    l
  MMETSP1061-20121228|13352_1 174 QCDQFIMIAGGTGITPMLQVANFMFRRSNDSVKVNLLYANQTEDDILVRKELEalatDFPDRFKLHYTVDRlpTDGSWKYSEGFISKEMIEnHCLFNgsSKNTQVLLCGPPPMLKFACYPNL 295
                  3457899********************************************9822224667899******844677789******997655144544227899*************986544 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   5.1e-08   5.2e-05     213     370 ..     105     282 ..      64     289 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 5.1e-08
    TIGR03224 213 rynnlaltvkrvted.hegnavrgvasnylcdlkkgdkvqvigpfgs........tflm.....p..nhpessilmictgtgsapmramterrrrrrakgeggklllffgartkeelpyfgplqklpkdfid...infafsrtpee.pkryvqdaireraadvaallk..ddntyiyvcg 370
                  +  ++a+ vk  +   h   +  g  s++l  lk+gd v++ gp g          + m     p   ++  + +mi  gtg +pm  +++++ rr ++  + k+ l++  +t++++     l+ l  df d   ++++  r p +   +y +  i +   +   l++  ++nt + +cg
  MMETSP1061-20121228|13352_1 105 TLGEVAVVVKVYKAGvHPKFPDGGKMSQHLDSLKIGDTVDIKGPKGHmeylgnggNYWMkpigkPkvTKQCDQFIMIAGGTGITPMLQVANFMFRRSND--SVKVNLLYANQTEDDILVRKELEALATDFPDrfkLHYTVDRLPTDgSWKYSEGFISKEMIENHCLFNgsSKNTQVLLCG 282
                  455677777776665144445667899*****************7652111111145553222221122345789******************998766..8899999*********************977433677777877651456777666666666555554224566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1401.82
//
Query:       MMETSP1061-20121228|13346_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.5e-206  681.9   0.0   1.1e-205  681.5   0.0    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase
    3.8e-74  248.1   0.0    3.6e-73  244.9   0.0    2.3  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    9.1e-58  194.4   0.0    1.4e-57  193.8   0.0    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    3.4e-13   46.8   0.0    2.3e-12   44.0   0.0    2.0  2  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
      5e-08   29.9   0.0    1.9e-07   27.9   0.0    1.8  2  TIGR02734 crtI_fam: phytoene desaturase
    2.3e-07   27.9   0.1    3.6e-07   27.2   0.1    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    1.3e-06   25.3   0.1    2.2e-06   24.5   0.0    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    1.6e-06   24.8   0.0    2.5e-06   24.2   0.0    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    1.9e-06   24.4   0.0    2.8e-06   23.8   0.0    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    3.9e-06   23.6   0.0    0.00074   16.1   0.0    2.1  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    2.2e-05   19.9   0.0    3.1e-05   19.4   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    7.8e-05   19.7   0.2    0.00012   19.1   0.1    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0001   19.3   0.1    0.00021   18.2   0.0    1.6  2  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    0.00037   17.6   0.5      0.001   16.2   0.1    1.8  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0018   15.0   0.1     0.0029   14.3   0.1    1.3  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
  ------ inclusion threshold ------
      0.014   12.3   0.4      0.033   11.1   0.1    1.6  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.018   11.7   0.1      0.039   10.6   0.0    1.5  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      0.041   10.7   0.0      0.068   10.0   0.0    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.046   10.5   0.0      0.068    9.9   0.0    1.2  1  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
      0.059   10.2   0.0      0.086    9.7   0.0    1.2  1  TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase


Domain annotation for each model (and alignments):
>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  681.5   0.0  5.4e-208  1.1e-205       1     452 [.      83     551 ..      83     552 .. 0.95

  Alignments for each domain:
  == domain 1    score: 681.5 bits;  conditional E-value: 5.4e-208
    TIGR02731   1 rvaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffgaypnllqllkelniedrlqwkehslifaqpdkpgelsrfdv.pdlpaplnvvlailrnndmltweekikfalgllpaivrgqkyveeldkltlsewlkkqgvpervndevfiaaskalnfidpdelsatvvltalnrflqerygsklafldgapperlcqpivdyitsrggevrlnarlkeivlned..gsvkafaladlegkesfevtadayvsalavdilklllpkpwkeleffkkleglegvpvinvhlwfdrklttvdhllfsrsellsvyadmsetckeyadpdksmlelvlapa.......kdwigrsdeeiieatlkeleklfpdelkadek............akllkskvvktprsvykatpgreklrpaqktpienfflagdytkqkylasmegavlsgklaaqai 452
                  +vai g+gl+gl++akyl+dagh p+v eardvlggkv+aw+dedgdw+etglhiffgaypn+++l++el+i+drlqwk h +ifa+++ pge++ fd+ p +pap+n  lail n++mlt  eki+ a  llp +++gq++++++d+l+++++++k g+per+n evfia++kal+fidpd+ls+tvvlta+nrfl+e +g ++afldg+ p+rlc p+ ++i++rgg+v ++++++eiv++e   +s+k++ l+ +e     +v ad yvsa++vdi+k ++p++w+++++f++ ++leg+pvin+h+wfdrkl+ vdhl fsrs+llsvyadms+tckey+dpd+smlelv+ap        ++wi+++de+ii+at+ el++lfp+e++ad+k            a+l+k+ vvk prsvy a+pgr+k+rp q++pi+n+ +agd+t qk+l+smegavl gklaa+ +
  MMETSP1061-20121228|13346_1  83 KVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKVSAWQDEDGDWIETGLHIFFGAYPNMMNLFDELDIHDRLQWKIHQMIFAMQELPGEFTTFDFiPGIPAPFNFGLAILLNQKMLTLGEKIQTAPPLLPMLIEGQSFIDAQDELSVTDFMRKYGMPERINTEVFIAMAKALDFIDPDKLSMTVVLTAMNRFLNEDNGLQMAFLDGNQPDRLCAPMQEHIEARGGKVIMESPIQEIVIDEAdgKSIKHLLLRSGE-----KVVADEYVSAMPVDIMKRMVPQEWQQMPYFRQFDELEGIPVINLHMWFDRKLKAVDHLCFSRSPLLSVYADMSVTCKEYYDPDQSMLELVFAPCspiaggnTNWISKTDEQIIDATMGELARLFPTEIAADDKwpstknqgpngqARLRKYSVVKVPRSVYAAIPGRNKYRPGQRSPIPNLTMAGDWTSQKFLGSMEGAVLGGKLAAEVV 551
                  69************************************************************************************************7699********************************************************************************************************************************************97423689999999998.....9*******************************************************************************************96333333359**************************996433444444445599************************************************************976 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  244.9   0.0   1.7e-75   3.6e-73       1     473 [.      83     551 ..      83     552 .. 0.90

  Alignments for each domain:
  == domain 1    score: 244.9 bits;  conditional E-value: 1.7e-75
    TIGR02732   1 kvaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemglhvffgcyanlfkllkkvgaldnlllkehthlfvnkg..geikeldfrfavgapfn.glkafftteqlklvdklrnalalatspivrglvdydgalktirdldkisfaewflskggseaslkrmwdpiayalgfidcenisarcmltifalfaakteasvlrllkgspdkyltkpileyleakgtklylrhkvkeikfekssdgetrvteliiskaeekkvikadayvaacdvpgikkllpkewrkfeefdkikkleavpvatvqlrydgwvtelkdeekrkqlkeaagldnllytadadfscfadlalaspedyykegqgsllqlvltpgdp.......flkksneeivkrvdkqvkelfp..........sske......lkllwssvvklaqslyreapgmdlfrpdqktpianfflagsytkqdyidsmegatlsgrkaaaai 473
                  kvai+g gl+gla+a  l daghe  +ye+r  lggkv +w+d+dg+ ie glh+ffg+y n+++l++ +  +d+l+ k h  +f  +   ge  ++df   + apfn gl  ++  + l+l +k++ a      p++  l++ +     i + d++s ++++++ g  e+    ++  +a al fid +++s   +lt ++ f    +  ++ +l+g   + l  p++e++ea+g+k+ ++  ++ei ++++ dg++ + +l + ++e    + ad+yv+a  v  +k+++p+ew+++ +f + ++le++pv+ + + +d             +l     +d l ++    +s +ad++++  e yy     s+l+lv++p  p       +++k++e+i+  +  ++ +lfp          s+k+       +l  +svvk+++s+y   pg++ +rp q++pi n+ +ag +t q ++ smega l g++aa+++
  MMETSP1061-20121228|13346_1  83 KVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKVSAWQDEDGDWIETGLHIFFGAYPNMMNLFDELDIHDRLQWKIHQMIFAMQElpGEFTTFDFIPGIPAPFNfGLAILLNQKMLTLGEKIQTA-----PPLLPMLIEGQ---SFIDAQDELSVTDFMRKYGMPERINTEVFIAMAKALDFIDPDKLSMTVVLTAMNRFLNEDNGLQMAFLDGNQPDRLCAPMQEHIEARGGKVIMESPIQEIVIDEA-DGKS-IKHLLLRSGE---KVVADEYVSAMPVDIMKRMVPQEWQQMPYFRQFDELEGIPVINLHMWFDR------------KL---KAVDHLCFSRSPLLSVYADMSVTCKE-YYDP-DQSMLELVFAPCSPiaggntnWISKTDEQIIDATMGELARLFPteiaaddkwpSTKNqgpngqARLRKYSVVKVPRSVYAAIPGRNKYRPGQRSPIPNLTMAGDWTSQKFLGSMEGAVLGGKLAAEVV 551
                  79***********************************************************************************987444****************989****************976.....67888888755...578899**********9999999999*********************************************9999***************************887.9998.9999999876...478******************************************99973............33...35899****************99865.6555.4699****99965444444459*******************983332222222444422222246888*********************************************************986 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.8   0.0   6.6e-60   1.4e-57       1     429 [.      84     552 ..      84     553 .. 0.88

  Alignments for each domain:
  == domain 1    score: 193.8 bits;  conditional E-value: 6.6e-60
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiDngqHvllgaytellallarvgaedrlql..erleltfldpegresrLrlsrl.paPlhlakg.llrakglsladklalarlllalkrerl...raaadetvaewLkakgqserlierlwepllvsaLNedperasaklaakVlrdsllakreasdlllprvdLselfvepaarylesrggevrlgtrvrel...easaggiralveaaeetlaadavvlAvpperaasllpe....edlaaklaalesspIttvhlrldrevklpaplvglvgglaqWlfdrgelagee.............gllavvvSaardledlereeladrivaelrrllpkv................aeakllkakvikekrAtFaatpglerlRPgartplpnlfLAGDwtatgyPATlEgAvrSGvqAAeavl 429
                  v+++GgGl+GLa+A  L++aG +  ++Ear  lGG++++ +d++ +  i  g H+  gay ++++l + ++ +drlq    +  +++ +  g++ +++  ++ paP+++  + ll+ k l+l +k+++a  ll +  e      a+++ +v++ +++ g +er+ ++++  ++ +    dp++ s+ ++   + + +l++ +  ++ +   +  + + +p+ + +e+rgg+v ++  ++e+   ea++++i+ l+  ++e++ ad++v A+p + +++++p+      ++ + ++le  p++++h+++dr++  +  ++    ++   ++++  ++ +e                +    ++ ++ + ++e+++d+ + el+rl+p++                 +a+l k  v+k  r ++aa pg +  RPg+r+p+pnl +AGDwt+  +   +EgAv  G+ AAe v 
  MMETSP1061-20121228|13346_1  84 VAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKVSAWQDEDGD-WIETGLHIFFGAYPNMMNLFDELDIHDRLQWkiHQMIFAMQELPGEFTTFDFIPGiPAPFNFGLAiLLNQKMLTLGEKIQTAPPLLPMLIEGQsfiDAQDELSVTDFMRKYGMPERINTEVFIAMAKALDFIDPDKLSMTVVLTAMNR-FLNEDNGLQMAFLDGNQPDRLCAPMQEHIEARGGKVIMESPIQEIvidEADGKSIKHLLLRSGEKVVADEYVSAMPVDIMKRMVPQewqqMPYFRQFDELEGIPVINLHMWFDRKL-KAVDHLCFSRSPLLSVYADMSVTCKEyydpdqsmlelvfAPCSPIAGGNTNWISKTDEQIIDATMGELARLFPTEiaaddkwpstknqgpnGQARLRKYSVVKVPRSVYAAIPGRNKYRPGQRSPIPNLTMAGDWTSQKFLGSMEGAVLGGKLAAEVVS 552
                  89***********************************999999999.******************************766677888899999999**997777******8773679999*********98776665554447899***********************99999887789************9975.888999999999999999**************************9333345567777777899999********************988778899*********************.66666666666666666666666665666666444333333344456889999***********************************99999**************************************************************9885 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.0   0.0   1.1e-14   2.3e-12       2     176 ..      81     270 ..      80     285 .. 0.84
   2 ?    0.3   0.0      0.21        42     265     319 ..     335     391 ..     303     465 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.0 bits;  conditional E-value: 1.1e-14
    TIGR00562   2 kkkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy.TrkesGyllEkGprtlleskegildllkdlGleavlvsidktdkrfvlkn.......kgklvpvPs....kiselvkflLlslgkklraglmle..eirkks..pgkd.eSveefvrrrlGdevlen.liepllsGiYagDvskLSlkr 176
                  kkkv+++GgG+sGL+ a +l+    + e v++Ea+d  GGk+   ++e+G  +E G + + +  + +++l  +l + + l+  +  +  f +++        + + ++P      ++ l++ ++l+lg+k++++  l    i  +s    +d  Sv +f+r+    e ++  +  ++ + +   D++kLS+  
  MMETSP1061-20121228|13346_1  81 KKKVAIIGGGLSGLACAKYLSDA--GHEPVVYEARDVLGGKVSaWQDEDGDWIETGLHIFFGAYPNMMNLFDELDIHDRLQW-KIHQMIFAMQElpgefttFDFIPGIPApfnfGLAILLNQKMLTLGEKIQTAPPLLpmLIEGQSfiDAQDeLSVTDFMRKYGMPERINTeVFIAMAKALDFIDPDKLSMTV 270
                  79*******************99..9999*************96799**********************************9.667788888889888887666766775222257788999999********965551145555588566658******998778888887999999999999999999975 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.21
    TIGR00562 265 leakdGvkvetdsvvltvpakkaaklLke..lsesaskeldkiqsppvilVnlglPe 319
                  l + +G+kv +d  v ++p   + +++++   + +  +++d+++  pvi+  + + +
  MMETSP1061-20121228|13346_1 335 LLLRSGEKVVADEYVSAMPVDIMKRMVPQewQQMPYFRQFDELEGIPVINLHMWFDR 391
                  778999999999999999999999999873347889999999999999999888654 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   9.5e-10   1.9e-07       2      50 ..      85     134 ..      84     149 .. 0.88
   2 ?   -1.0   0.0      0.56   1.2e+02     219     282 ..     297     362 ..     295     398 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 9.5e-10
    TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleed.GfrfDtG 50 
                   +iG+Gl+GLA+A  L  aG+e  v e+rd +GG+ ++++++ G  + tG
  MMETSP1061-20121228|13346_1  85 AIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKVSAWQDEdGDWIETG 134
                  79*************************************98646666665 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.56
    TIGR02734 219 alvealaklaedlggelrlnaeveeieteg...erataveledgerleadavvsnaDlvhtykkllr 282
                  +l + +++++e  gg++ ++++ +ei  ++   ++++++ l++ge++ ad  vs+  +   +k++++
  MMETSP1061-20121228|13346_1 297 RLCAPMQEHIEARGGKVIMESPIQEIVIDEadgKSIKHLLLRSGEKVVADEYVSAMPVD-IMKRMVP 362
                  57788999999999999999999999877666688999999999999999999987653.4444444 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.1   1.7e-09   3.6e-07     143     182 ..      81     120 ..      72     122 .. 0.92

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.7e-09
    TIGR01317 143 GkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182
                   kkva++G G +Gla+a+ l+ aGh+  v+e  d  GG +
  MMETSP1061-20121228|13346_1  81 KKKVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKV 120
                  589**********************************976 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.1e-08   2.2e-06     128     172 ..      76     120 ..      65     123 .. 0.89

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.1e-08
    TIGR01316 128 kapstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGvl 172
                    +s kkkva+iG G +Gla+a+ l+ +Ghe  v+ea +  GG +
  MMETSP1061-20121228|13346_1  76 SGDSEKKKVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKV 120
                  56899********************************99888865 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   1.2e-08   2.5e-06     138     179 ..      78     119 ..      51     122 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.2e-08
    TIGR01318 138 kktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGl 179
                    ++k+va+iG+G +Glaca  l+ aG + vv++  + +GG 
  MMETSP1061-20121228|13346_1  78 DSEKKKVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGK 119
                  346789*****************************9999995 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.4e-08   2.8e-06     372     420 ..      74     122 ..      64     128 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.4e-08
    TIGR03997 372 tlkkarrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvkl 420
                  +++  +++kkv ++GgG +Gl+ a+  +  Gh+ +++e  + lGG+v +
  MMETSP1061-20121228|13346_1  74 KVSGDSEKKKVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKVSA 122
                  55666788**************************************975 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   3.6e-06   0.00074       2      44 ..      82     124 ..      81     130 .. 0.93
   2 !    5.4   0.0    0.0063       1.3     234     315 ..     298     377 ..     231     400 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 3.6e-06
    TIGR02733   2 ksvvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfk 44 
                  k+v +iG+G++Gl++a  l+  G e  ++ea  ++GG  s+++
  MMETSP1061-20121228|13346_1  82 KKVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKVSAWQ 124
                  789**********************************988876 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0063
    TIGR02733 234 lsdrlvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvanlpaqsllelleeaalskgyrkrlkkl 315
                  l   ++e ++ +gg+++++  +++i  +e  a +k +++   ++ e+v ad+ v ++p+  + ++++++ ++  y ++ ++l
  MMETSP1061-20121228|13346_1 298 LCAPMQEHIEARGGKVIMESPIQEIVIDE--ADGKSIKHLLLRSGEKVVADEYVSAMPVDIMKRMVPQEWQQMPYFRQFDEL 377
                  5566789999****************955..455555555567788999*****************9887887787776665 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.5e-07   3.1e-05     530     577 ..      74     121 ..      56     124 .. 0.86

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.5e-07
    TIGR03315 530 kpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvk 577
                  k +++sek+kva+iG+G +Gl+ + +l+ aG++  v+e ++  gG v+
  MMETSP1061-20121228|13346_1  74 KVSGDSEKKKVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKVS 121
                  456788889********************************9999886 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   5.7e-07   0.00012       1      39 [.      83     121 ..      83     124 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 5.7e-07
    TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgAS 39 
                  kva+IG+G++g+a+a+ L+ +G++  ++e+++ l+ + S
  MMETSP1061-20121228|13346_1  83 KVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKVS 121
                  69****************************998887766 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.1       4.6   9.5e+02     324     347 ..      48      71 ..      46      76 .. 0.87
   2 !   18.2   0.0     1e-06   0.00021       4      86 ..      84     165 ..      81     187 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 4.6
    TIGR00031 324 yPvnddknkalfkkylelasklen 347
                  yP  +++n++ ++ y el+s + n
  MMETSP1061-20121228|13346_1  48 YPKPNVENTDNYRLYNELSSSFRN 71 
                  8999999**********9998865 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 1e-06
    TIGR00031   4 yiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdekgllvhkyGphifhtdnkkvldyisdfvelneyqhrvlkl 86 
                  + i+G GlsG  +a+ l++ +++ +v e r+ +GG +   +de+g  + + G hif     ++++  +++   ++ q ++ ++
  MMETSP1061-20121228|13346_1  84 VAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKVSAWQDEDGDWI-ETGLHIFFGAYPNMMNLFDELDIHDRLQWKIHQM 165
                  679*********************************999999997665.67*****999999999988887777777666554 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1     5e-06     0.001      21      59 ..      81     119 ..      69     124 .. 0.89
   2 ?   -2.0   0.0       1.7   3.5e+02     233     253 ..     536     555 ..     519     556 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5e-06
    TIGR00292  21 esDviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59 
                  +  v+i+G+G sGL++a+yl+ +g   vv e +  +GG 
  MMETSP1061-20121228|13346_1  81 KKKVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGK 119
                  5679***************************99999985 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.7
    TIGR00292 233 pifGgmllsGkkvaelilekl 253
                  ++ G  +l Gk +ae++ +k 
  MMETSP1061-20121228|13346_1 536 SMEG-AVLGGKLAAEVVSKKA 555
                  4444.4689999999999875 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.4e-05    0.0029       1      38 [.      84     121 ..      84     123 .. 0.95

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.4e-05
    TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkkigkKll 38 
                  v+iiGgG +Gl +A  ++ +g++ +++E+++ +g K++
  MMETSP1061-20121228|13346_1  84 VAIIGGGLSGLACAKYLSDAGHEPVVYEARDVLGGKVS 121
                  79*********************************996 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00016     0.033       1      31 [.      84     114 ..      84     123 .. 0.84
   2 ?   -2.1   0.0       1.6   3.3e+02     150     202 ..     295     351 ..     294     361 .. 0.70

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00016
    TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekde 31 
                  v++iGgG+ Gl+ A +L+++gh+  + e ++
  MMETSP1061-20121228|13346_1  84 VAIIGGGLSGLACAKYLSDAGHEPVVYEARD 114
                  79********************988888764 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.6
    TIGR02352 150 prellkaLvkaleklGveiieevevqeieargekvtavk....tssekvqadqvvla 202
                  p +l++ + +++e  G+++i e + qei +++    ++k     s ekv ad++v a
  MMETSP1061-20121228|13346_1 295 PDRLCAPMQEHIEARGGKVIMESPIQEIVIDEADGKSIKhlllRSGEKVVADEYVSA 351
                  678888899999999999999999998876654433332111135557888888876 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00019     0.039       2      37 ..      83     119 ..      82     126 .. 0.84
   2 ?   -3.7   0.0       4.2   8.6e+02      59      83 ..     298     323 ..     294     361 .. 0.61

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00019
    TIGR01292   2 dviiiGaGpaGltaaiYaaranlktlliegkea.ggq 37 
                  +v+iiG+G +Gl+ a Y + a+ +++++e  +  gg+
  MMETSP1061-20121228|13346_1  83 KVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVlGGK 119
                  799*************************987651455 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 4.2
    TIGR01292  59 lmekmkeqakkfgaeiil.eevkkvd 83 
                  l   m+e++++ g ++i+ + ++++ 
  MMETSP1061-20121228|13346_1 298 LCAPMQEHIEARGGKVIMeSPIQEIV 323
                  66778888888888888733455543 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00033     0.068       3      28 ..      84     109 ..      83     114 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00033
    TIGR03378   3 viiiGgGlaGlscalrlaeaGkktai 28 
                  v+iiGgGl+Gl+ca  l +aG+  ++
  MMETSP1061-20121228|13346_1  84 VAIIGGGLSGLACAKYLSDAGHEPVV 109
                  79*******************98776 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00033     0.068       2      35 ..      83     116 ..      82     132 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00033
    TIGR04046   2 pvviiGaGqaGlsvsyllkkkgvdhvvlekktva 35 
                  +v iiG+G +Gl+ + +l+ +g ++vv e + v 
  MMETSP1061-20121228|13346_1  83 KVAIIGGGLSGLACAKYLSDAGHEPVVYEARDVL 116
                  689**************************98763 PP

>> TIGR01087  murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00042     0.086       1      33 [.      83     115 ..      83     133 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00042
    TIGR01087   1 kvlilGlgktGravaefLaekgaevtvtdlkke 33 
                  kv i+G g +G a+a++L ++g+e +v+  ++ 
  MMETSP1061-20121228|13346_1  83 KVAIIGGGLSGLACAKYLSDAGHEPVVYEARDV 115
                  699***********************9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        60  (0.014627); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.40u 0.29s 00:00:00.69 Elapsed: 00:00:00.41
# Mc/sec: 1983.06
//
Query:       MMETSP1061-20121228|13354_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037    9.7   0.5      0.047    9.3   0.4    1.0  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.4   1.1e-05     0.047     256     293 ..      34      71 ..      20      85 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 1.1e-05
    TIGR02917 256 kapnspkaaylkAlvdfqkkkfedAretlqaalksape 293
                     + + a+yl  lvdf++ ++++A+++++++l+  p 
  MMETSP1061-20121228|13354_1  34 VSASASHAQYLSRLVDFKQMDIQSALDQMKTLLSTRPH 71 
                  4456789**************************99987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1637.86
//
Query:       MMETSP1061-20121228|13357_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1488.84
//
Query:       MMETSP1061-20121228|13355_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-76  252.6   0.3    1.3e-74  248.5   0.2    2.0  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    1.2e-59  200.2   1.7    9.6e-59  197.2   1.2    1.9  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    3.9e-43  145.6   0.5    2.2e-42  143.1   0.4    1.8  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    6.6e-13   44.8   0.1    9.9e-13   44.2   0.1    1.2  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    3.9e-12   43.4   0.6    7.7e-10   35.9   0.3    2.9  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    5.5e-11   39.5   0.4    1.6e-06   24.8   0.0    2.3  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    7.1e-11   39.3   0.3    9.7e-05   19.1   0.0    2.9  3  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    1.3e-09   35.3   0.1    0.00024   17.9   0.0    2.2  2  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    1.3e-09   34.2   0.0      2e-09   33.7   0.0    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    8.3e-09   33.4   0.5      3e-07   28.3   0.2    2.5  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    8.4e-09   32.7   0.4    1.7e-07   28.4   0.0    2.5  2  TIGR02053 MerA: mercuric reductase
    3.5e-08   30.5   1.0    5.8e-05   19.9   0.2    2.1  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    1.6e-07   28.3   0.4    1.7e-05   21.7   0.2    3.0  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    6.4e-07   26.7   0.0    1.2e-06   25.8   0.0    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    6.5e-07   26.7   0.0    2.3e-05   21.6   0.0    2.2  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    1.9e-05   21.9   0.1    4.7e-05   20.6   0.0    1.8  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    3.4e-05   20.6   0.1     0.0038   13.8   0.1    2.4  2  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00013   19.0   0.1    0.00043   17.3   0.1    1.8  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
    0.00016   18.4   0.5     0.0012   15.5   0.0    2.0  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
     0.0007   16.8   0.2     0.0011   16.2   0.1    1.2  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0011   15.9   0.2      0.004   14.0   0.2    1.8  2  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0013   15.6   0.1     0.0025   14.7   0.0    1.4  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0016   15.4   0.0     0.0025   14.8   0.0    1.4  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0019   14.9   0.1     0.0026   14.5   0.0    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.002   14.5   2.8       0.11    8.8   0.1    2.5  3  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
     0.0021   14.7   0.5       0.47    6.9   0.1    3.1  3  TIGR00551 nadB: L-aspartate oxidase
     0.0035   13.8   1.7      0.011   12.1   0.1    2.3  2  TIGR01176 fum_red_Fp: fumarate reductase, flavoprotein subunit
      0.004   13.9   0.6       0.14    8.8   0.0    2.5  3  TIGR01438 TGR: thioredoxin and glutathione reductase
  ------ inclusion threshold ------
      0.013   11.7   0.0      0.032   10.4   0.0    1.6  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
      0.014   12.1   0.0      0.022   11.4   0.0    1.3  1  TIGR03452 mycothione_red: mycothione reductase
      0.036   10.7   0.0      0.048   10.3   0.0    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.037   10.2   0.3      0.056    9.6   0.2    1.2  1  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA


Domain annotation for each model (and alignments):
>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.5   0.2     1e-76   1.3e-74       2     300 .]     107     437 ..     106     437 .. 0.87

  Alignments for each domain:
  == domain 1    score: 248.5 bits;  conditional E-value: 1e-76
    TIGR01292   2 dviiiGaGpaGltaaiYaaranlktlliegkeaggqlttttevenyPGfkegisgselmekmkeqakkfgaeiil.eevkkvdkker.......pfkvltedekeykakaviiAtGakarklg.ikgeeeflgrGvsyCavCDgalfknkevavvGggdsAveealyLskiakkVtlvhrrd.........klraekillerlkkne..............kievllnstveeikGde.kvesvkikntktkeeeelkvdgvFia...iGhepntellkel.leldeegyivvdee.mrTsveGvfaaGDvrdkslrQvvtaagdGaiAalsvekyl 300
                  dv+iiG+GpaG+t a+Y++ra+l+t++++++ea g+l++t+++ nyPG+  ++ g el+++mk+qa+++g++i    +v  ++ +++       +++v+  d  ++ka+++++AtGa+ r +  ++gee++lg+GvsyCa+CDga++++ evav+G   +Aveea++L+k+a++V+ ++ +d            a+++ ++     +              +++ + +++++e++Gd   v++v+i  ++  ++  + v+g Fi+    G++p t++l ++ ++lde+g +v+d+   +Ts +Gvfa GD+r++ ++Qvv+aa+dG++Aa+s+ek+l
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGALAVTSHIANYPGVDRNMPGLELLQQMKKQAVEYGTRICDrAQVFMIEIQDDggdenpyNKVVYCPD-YTVKARSLVLATGAMGRSMPyLPGEEKYLGQGVSYCATCDGAFYRGSEVAVYGATGEAVEEAMFLTKFASTVHWITPTDikgylerldDGTATSAETN-----SlfdpsslrdlldkpNVKHHNKARLREVEGDVsGVTGVRILPVEAADDIGIPVEGAFIYgagGGSKPITDFLGGTgIALDESGGVVTDDAmESTSHKGVFAIGDIRNTPFKQVVVAASDGCVAAMSIEKFL 437
                  89**********************************************************************987689999988887788887556666665.*****************996378***************************************************997762222111112234333333.....122222333333333****************989************************843347*************************9557***********************************997 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.2   1.2   7.5e-61   9.6e-59       6     312 ..     107     441 ..     101     445 .. 0.82

  Alignments for each domain:
  == domain 1    score: 197.2 bits;  conditional E-value: 7.5e-61
    TIGR03143   6 dlvviGgGpaglsaGiyagraklkvliiekdelGGqititsevvnyPgi.reitGeelmqemrkqaqdfgvkflq.aevldvdlegd.......iktvktakgdlkalavliatGasprklGf.eGeeeftGrGvaycatcdGefftGldvlviGgGfaaaeeavfltkyakkvtviv.........repdftcakaiae.........kvkanPkievkfnvelkevtGdd.vlreakfvnnatGeeteykakkdegtfGvfvfvGyvPsselfkgk.velderGyvvtnedle.tnveGvyaaGdlrvkelrqvvtavadGaiaateleryvkelk 312
                  d+ +iGgGpag +  +y++ra l+++i++k+e+ G + +ts++ nyPg+ r++ G el q+m+kqa ++g +  + a+v  +++++d        k v   + ++ka+++++atGa  r + + +Gee + G+Gv+ycatcdG f++G +v v G+   a eea+fltk+a+ v  i          r +d t + a ++         + + +P ++ + +  l+ev+Gd+  ++  +++  ++ +         eg+f      G +P ++ + g+ ++lde G vvt++ +e t+ +Gv+a+Gd+r   ++qvv a +dG++aa+++e+++k +k
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGALAVTSHIANYPGVdRNMPGLELLQQMKKQAVEYGTRICDrAQVFMIEIQDDggdenpyNKVVYCPDYTVKARSLVLATGAMGRSMPYlPGEEKYLGQGVSYCATCDGAFYRGSEVAVYGATGEAVEEAMFLTKFASTVHWITptdikgyleRLDDGTATSAETNslfdpsslrDLLDKPNVKHHNKARLREVEGDVsGVTGVRILPVEAADDIGIP--V-EGAFIYGAGGGSKPITDFLGGTgIALDESGGVVTDDAMEsTSHKGVFAIGDIRNTPFKQVVVAASDGCVAAMSIEKFLKGRK 441
                  999*********************************************955789*****************998626788888887633444445889999********************8658*************************************************877522222222255666655443331111111114567788888888889999988625777788887777776655..3.33565556679******998755***************75899***********************************9876 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   0.4   1.7e-44   2.2e-42     206     507 ..      99     432 ..      87     438 .. 0.82

  Alignments for each domain:
  == domain 1    score: 143.1 bits;  conditional E-value: 1.7e-44
    TIGR03140 206 aeeekekydvlvvGgGPagaaaaiyaarkGlkvalvae.riGGqvkdtvgienlisvke.ttGsklaanleehikeynidvleeqkvkkie......teeeakevelesGevlkaksvivatGakWrelg.vpGekeylgkGvayCphCdGPlfkgkkvaviGGGnsGieaaidlaGivehv...t......vlefadelka.........dkvlveklkslsnvdiltsaktkeivgdgdkvtglkykdrsseeekkleldGvfvq...iGlvpnteflkda.velnrrGeivider.grtsvkGifaaGdvttvpykqiiiamGeGakaals 507
                  +e e+ + dv ++GgGPag + a+y++r  l++ ++ +    G    t  i n+ +v +   G +l +++++   ey   + ++ +v  ie       e+  ++v      ++ka+s+++atGa  r +  +pGe++ylg+Gv+yC+ CdG +++g +vav G     +e a+ l+   + v   t       le +d+  a         d   ++ l +++nv+   +a+ +e+ gd + vtg+++   ++ +   + ++G f+     G  p t+fl ++ + l++ G +v+d    +ts kG+fa Gd+ ++p+kq+++a  +G+ aa+s
  MMETSP1061-20121228|13355_1  99 KEMEIIECDVAIIGGGPAGCTCALYTSRADLSTVILDKnEAIGALAVTSHIANYPGVDRnMPGLELLQQMKKQAVEYGTRICDRAQVFMIEiqddggDENPYNKVVYCPDYTVKARSLVLATGAMGRSMPyLPGEEKYLGQGVSYCATCDGAFYRGSEVAVYGATGEAVEEAMFLTKFASTVhwiTptdikgYLERLDDGTAtsaetnslfDPSSLRDLLDKPNVKHHNKARLREVEGDVSGVTGVRILPVEAADDIGIPVEGAFIYgagGGSKPITDFLGGTgIALDESGGVVTDDAmESTSHKGVFAIGDIRNTPFKQVVVAASDGCVAAMS 432
                  55667789*************************99964145578899**********75268*************************9999655544344456788888899*****************648****************************************98876666552214333222345455444422221111122234566789*******************************************973335899*******999*********998761579******************************97 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.1   7.7e-15   9.9e-13     538     835 ..     106     433 ..      92     446 .. 0.76

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 7.7e-15
    TIGR03315 538 hkvaviGaGPaGlsagyflaraGlpvtvfekkekagG..vvkniiPefrisaeviqkd.lelvkkkGvefklGvsedltvdelkkeg.......ykyvvlaiG.adkssklklkegnervlksleflkefkedk...........tklklGkrvvvvGgGnt....amdaaraalrvpGvekvtvv.yrrtkkemPaskeeleealedGvefkell.sPekfedgklvcekmklgekdasGrrr.pvetgelvelead.aviaav..GeqvdtellkklgieldekgkvvvneetketsvtnvfviGdakkGP.ativeaiadgrkaakai 835
                    va+iG+GPaG + +++ +ra l+  +++k+e +g   v ++i     +  ++   + l+ +kk+ ve+ + + +  +v  +  ++       y+ vv+++  + k ++l l++g   +  s+++l   ++              +   G +v+v G+       am  ++ a +v+ +    +  y   +++  a+  e +  l d  +++ ll +P   +++k ++++++ +     G r  pve+ + + ++++ a i     G +  t++l  +gi+lde+g vv +++ + ts ++vf iGd+++ P   +v a +dg  aa +i
  MMETSP1061-20121228|13355_1 106 CDVAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGAlaVTSHIANYPGVDRNMPGLElLQQMKKQAVEYGTRICDRAQVFMIEIQDdggdenpYNKVVYCPDyTVKARSLVLATG--AMGRSMPYLPGEEKYLgqgvsycatcdGAFYRGSEVAVYGATGEaveeAMFLTKFASTVHWITPTDIKgYLERLDDGTATSAETNS-LFDPSSLRDLLdKPNVKHHNKARLREVEGDVSGVTGVRIlPVEAADDIGIPVEgAFIYGAggGSKPITDFLGGTGIALDESGGVVTDDAMESTSHKGVFAIGDIRNTPfKQVVVAASDGCVAAMSI 433
                  469******************************999632445555444566666544425777888899888887776665443222224444499***9986478999*****99..44467777765555444568999988888999********8655011156666788888888888885488888888898888765.5566677766615666669999******999999998877************8456655511466679***************************************9446899999*99999887 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.3     6e-12   7.7e-10       1     181 [.     107     283 ..     107     289 .. 0.75
   2 ?    3.3   0.0     0.051       6.5     246     290 ..     370     413 ..     318     435 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 6e-12
    TIGR04018   1 dviiiGaGPiGlaaaieakkaglsyliiekgalvnsiykyPtnmtffstsekleigeiPfisenekptrkealeYYrrvaekkklniklyeevekvkkkeekf..evktekeeyeakkvvvatGyydipnllnvpGedl..pkvshyyk..eahpyvkqkvvvvGgknsavdaalelyrkgaevtlv 181
                  dv iiG+GP G ++a+ + +a+ls++i++k+  + ++    + +  +   ++ ++ ++ +     +  +k+a+eY  r++++ ++ +    e+++   +e+ +   v     +++a+++v+atG  ++ +   +pGe++   +   y    +   y + +v+v G++  av+ a+ l++  ++v  +
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGALAVTSH-IANYPGVDR-NMPGLELL----QQMKKQAVEYGTRICDRAQVFMI---EIQDDGGDENPYnkVVYCPDYTVKARSLVLATGAMGRSMP-YLPGEEKylGQGVSYCAtcDGAFYRGSEVAVYGATGEAVEEAMFLTKFASTVHWI 283
                  899***************************988887765443.333444443.23333333....446789***********998654...455555555444115777999**************98765.69***973334445543247899********************999998888655 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.051
    TIGR04018 246 GyrpdlelleklgveleedekipvydeetmEtnveglylaGvvaa 290
                  G +p +++l  +g++l+e+ +  v+d+    t+ +g++  G + +
  MMETSP1061-20121228|13355_1 370 GSKPITDFLGGTGIALDES-GGVVTDDAMESTSHKGVFAIGDIRN 413
                  678999***********99.455666665567899****998865 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.2e-08   1.6e-06     128     179 ..      92     143 ..      84     153 .. 0.88
   2 !   12.6   0.0   6.2e-05    0.0079     399     466 ..     373     438 ..     335     439 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.2e-08
    TIGR01318 128 kgwrpdlskvkktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGl 179
                  +g   d+ +++  +  va+iG+GpaG +ca   +ra   +v+ d+ ++iG l
  MMETSP1061-20121228|13355_1  92 QGPPADVKEMEIIECDVAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGAL 143
                  555679999999999***********************************98 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 6.2e-05
    TIGR01318 399 hamewlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGa.dlvvtavaeGrkaaegildyle 466
                    +++l   gi ld+ G +v++   ++   ts++ +fa Gdi++     vv a ++G  aa +i ++l+
  MMETSP1061-20121228|13355_1 373 PITDFLGGTGIALDESGGVVTD---DAMESTSHKGVFAIGDIRNTPfKQVVVAASDGCVAAMSIEKFLK 438
                  456899999**********999...667789***********987537899999*********999885 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   5.5e-06   0.00071       2      35 ..     106     139 ..     105     145 .. 0.89
   2 ?    0.2   0.0       0.4        51     128     150 ..     209     230 ..     159     251 .. 0.83
   3 !   19.1   0.0   7.6e-07   9.7e-05     267     331 ..     371     435 ..     312     447 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.5e-06
    TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvekekl 35 
                   dv +iGgGp+G ++A  ++++ l++++++k++ 
  MMETSP1061-20121228|13355_1 106 CDVAIIGGGPAGCTCALYTSRADLSTVILDKNEA 139
                  79*****************************654 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.4
    TIGR01350 128 kkleakniiiAtGseprelplkl 150
                   +++a ++++AtG++ r++p  l
  MMETSP1061-20121228|13355_1 209 YTVKARSLVLATGAMGRSMPY-L 230
                  478999*********999997.4 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 7.6e-07
    TIGR01350 267 rkpnleelgleklgveldergaikvdeelr.tnvpgiyaiGDvigkl.mLAhvAskegvvaaekiag 331
                   kp ++   l  +g+ lde g +++d+ ++ t+ +g++aiGD+ +++ +   vA ++g vaa  i +
  MMETSP1061-20121228|13355_1 371 SKPITD--FLGGTGIALDESGGVVTDDAMEsTSHKGVFAIGDIRNTPfKQVVVAASDGCVAAMSIEK 435
                  445555..68899*************9997478889*******99872456789999*999998865 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.1e-05    0.0014     143     236 ..     105     207 ..      83     237 .. 0.67
   2 !   17.9   0.0   1.9e-06   0.00024     411     483 ..     369     442 ..     339     444 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.1e-05
    TIGR01317 143 GkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGl.lryGiPnl.kldkeiv.erridlleaeGvdfvtnveiGkdisaeelked......fdavvlat 236
                     va++G GPaG ++a   +ra  +  + ++++ +G l ++  i n+  +d+++     +++++++ v++ t +    ++ + e+++d      ++ vv++ 
  MMETSP1061-20121228|13355_1 105 ECDVAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGALaVTSHIANYpGVDRNMPgLELLQQMKKQAVEYGTRICDRAQVFMIEIQDDggdenpYNKVVYCP 207
                  4579**********************************94566788773366664313456777777777766655554444444443222222366666665 PP

  == domain 2    score: 17.9 bits;  conditional E-value: 1.9e-06
    TIGR01317 411 GfvgpeqallddlgvdkdergnikaeldesetsidGvfaaGdarrG.qslivwaineGreaaravdkylmgesv 483
                  G   p +  l  +g+  de g + +++  ++ts +Gvfa Gd+r      +v a ++G  aa +++k+l g  v
  MMETSP1061-20121228|13355_1 369 GGSKPITDFLGGTGIALDESGGVVTDDAMESTSHKGVFAIGDIRNTpFKQVVVAASDGCVAAMSIEKFLKGRKV 442
                  556677777888899999*****99999999*************873468999****************99765 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   1.5e-11     2e-09     165     296 ..     102     229 ..      91     238 .. 0.78

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 1.5e-11
    TIGR01372 165 vnahcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllseaetidGkpaaewiaetvaeLealdevtlltrttvfgyydenllgllervtdhldepa.kgvprerlwrvrakrvvlAtGAlErplvf 296
                    + cDv ++G+GpaG + A+  +ra ++ +++d+++++G      +++i   p+++     ++ L++++  + ++  t +   d+  + ++e + d+ de + ++v+    + v+a+++vlAtGA+ r +++
  MMETSP1061-20121228|13355_1 102 EIIECDVAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGAL-A-VTSHIANYPGVDRNMPGLELLQQMK-KQAVEYGTRI--CDRAQVFMIEIQDDGGDENPyNKVVYCPDYTVKARSLVLATGAMGRSMPY 229
                  4568*******************************9999854.3.4467888888888888888788777.4555555554..46666777777777665544388888999******************998 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.2   2.3e-09     3e-07       2      39 ..     107     144 ..     106     153 .. 0.91
   2 ?    2.4   0.0      0.18        23      96     172 ..     167     247 ..     155     266 .. 0.74
   3 ?   -3.0   0.0       7.9     1e+03     252     270 ..     392     410 ..     386     432 .. 0.64

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 2.3e-09
    TIGR02032   2 DvvvvGaGpaGssaAlrlakkGlrVlllekkelpreke 39 
                  Dv ++G+GpaG++ Al+++++ l++++l+k+e++++++
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGALA 144
                  9*******************************999865 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.18
    TIGR02032  96 lLaekAqeagaelllettvlsveied......ekvkvevredekkevtakivigAdGakskvakklglkkekrelavalraev 172
                  ++ ++A e g ++   ++v  +ei+d       + kv +      +v+a+ ++ A+Ga ++    l+ ++++  ++v++ a +
  MMETSP1061-20121228|13355_1 167 QMKKQAVEYGTRICDRAQVFMIEIQDdggdenPYNKVVYCP--DYTVKARSLVLATGAMGRSMPYLPGEEKYLGQGVSYCATC 247
                  66778889999999999999999998888877444444444..379************8877777666666666666665554 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 7.9
    TIGR02032 252 PirradektvtgnvllvGD 270
                   +++a e+t++++v+++GD
  MMETSP1061-20121228|13355_1 392 VTDDAMESTSHKGVFAIGD 410
                  4455555566666666665 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.1      0.13        17     169     202 ..     107     140 ..      98     224 .. 0.61
   2 !   28.4   0.0   1.3e-09   1.7e-07     168     327 ..     255     432 ..     201     444 .. 0.62

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.13
    TIGR02053 169 slvviGggaiavElaqlfarlGsevtllqrserl 202
                   +++iGgg  +   a    r  + +++l + e++
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDKNEAI 140
                  3555555555555555555555555555554443 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 1.3e-09
    TIGR02053 168 eslvviGggaiavElaqlfarlGsevtllqrser..llkeeepeis...........aaveellaeeGvevvksakvkavskrnggkk...lvtvekn.dskkeveadellvAtG.RkpnvdgLnLekvgvklderGeilvdeklr.tsnpkiyAAGDvikg.lqlesvAakeGvvaAen 327
                  ++++v G+   avE a  + +  s v+ ++ +++   l++ ++  +            ++++ll +  v+ +++a++++v+    g +   ++ ve   d    ve   ++ A G  kp +d   L  +g+ lde+G+++ d+ ++ ts ++++A GD+ +   + + vAa +G vaA  
  MMETSP1061-20121228|13355_1 255 SEVAVYGATGEAVEEAMFLTKFASTVHWITPTDIkgYLERLDDGTAtsaetnslfdpSSLRDLLDKPNVKHHNKARLREVEGDVSGVTgvrILPVEAAdDIGIPVEGAFIYGAGGgSKPITD--FLGGTGIALDESGGVVTDDAMEsTSHKGVFAIGDIRNTpFKQVVVAASDGCVAAMS 432
                  56677777777777777777777777766655421133333332220111111111134667888888999999999999875544440004445554134556788888888652688888..56799***************97478899*******999678999*********975 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00072     0.093     133     161 ..     105     133 ..      87     154 .. 0.83
   2 !   19.9   0.2   4.6e-07   5.8e-05     378     449 .]     362     437 ..     321     437 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00072
    TIGR01316 133 kkkvaviGaGpaGlavaselakkGhevtv 161
                  +  va+iG GpaG ++a  ++++  +  +
  MMETSP1061-20121228|13355_1 105 ECDVAIIGGGPAGCTCALYTSRADLSTVI 133
                  568**************999998877666 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 4.6e-07
    TIGR01316 378 avivaiGqeankii..aedsslktskrGtivvdedle.tsieGvfaGGdvirGe.atvilalgdGkraakaideyl 449
                  a i   G ++ +i     +++++  ++G +v d+ +e ts +Gvfa Gd+ +   ++v++a +dG  aa +i+++l
  MMETSP1061-20121228|13355_1 362 AFIYGAGGGSKPITdfLGGTGIALDESGGVVTDDAMEsTSHKGVFAIGDIRNTPfKQVVVAASDGCVAAMSIEKFL 437
                  556677778888862245779**********999864399**********9875378***************9986 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.2   1.3e-07   1.7e-05       1      35 [.     108     142 ..     108     147 .. 0.95
   2 ?    1.0   0.0      0.25        32     109     165 ..     165     230 ..     158     238 .. 0.65
   3 ?    1.5   0.0      0.17        22     358     377 ..     392     411 ..     380     414 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.3e-07
    TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkkigk 35 
                  v+iiGgG+aG ++A+  ++++++ ++l+kn+ ig+
  MMETSP1061-20121228|13355_1 108 VAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGA 142
                  79******************************996 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.25
    TIGR00275 109 ldaLlkelkelgvevlteskvksikkeeek.......fevetekkeleakkvilatG..gksypkl 165
                  l+ ++k++ e+g +++ +++v  i+ ++++         v + + +++a +++latG  g s+p l
  MMETSP1061-20121228|13355_1 165 LQQMKKQAVEYGTRICDRAQVFMIEIQDDGgdenpynKVVYCPDYTVKARSLVLATGamGRSMPYL 230
                  56666777777777777777777644333324444423344588999**********555577766 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.17
    TIGR00275 358 inpktmesklvkglYfaGEv 377
                  + +  mes+ +kg++ +G +
  MMETSP1061-20121228|13355_1 392 VTDDAMESTSHKGVFAIGDI 411
                  56789*************87 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   9.5e-09   1.2e-06      17      59 ..     101     143 ..      96     188 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 9.5e-09
    TIGR00292  17 ldyaesDviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59 
                  ++++e Dv+i+G+Gp+G t+a y +++ l +v+l+++ aiG  
  MMETSP1061-20121228|13355_1 101 MEIIECDVAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGAL 143
                  5899*********************************999964 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.079        10     147     164 ..     107     124 ..      95     227 .. 0.72
   2 !   21.6   0.0   1.8e-07   2.3e-05     197     282 ..     314     413 ..     255     423 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.079
    TIGR03169 147 slavvGgGaagvElalal 164
                  ++a++GgG ag   al  
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYT 124
                  79*********9888863 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 1.8e-07
    TIGR03169 197 vkrllakrgievlekeevtevede..........alllaegetlead..avllatgakap..awLaesglsldedGflavkktLqslshpevFaaGDcav 282
                  ++ ll+k +++ ++k++  eve +           ++ a++  ++++  ++  a g + p   +L  +g++lde+G + +++ ++s+sh+ vFa GD+ +
  MMETSP1061-20121228|13355_1 314 LRDLLDKPNVKHHNKARLREVEGDvsgvtgvrilPVEAADDIGIPVEgaFIYGAGGGSKPitDFLGGTGIALDESGGVVTDDAMESTSHKGVFAIGDIRN 413
                  5677888899999999999999888888888888666666666666511455565555542358*********************************965 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.6e-07   4.7e-05     126     305 ..     209     412 ..     105     446 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.6e-07
    TIGR01421 126 keytakhiliatGgkpsipeniPGae........lgldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrer..vlrsfdelisek...........vveelekaglevhklskvvkvektvegklvitledg.....keiedvdeliwaiG..rkpntkdlglekvgvkldekgyikvd.eyqntnvegiyalGdvv 305
                   +++a+ +++atG++ + +  +PG+e        +  + dg f       +v++ Ga   ave a  l  + s  +++   +    l ++d+  +++           + + l+k +++ h+++++ +ve  v+g + + +  +       i+   + i++ G   kp t+ l    +g++lde g +  d     t+ +g++a+Gd+ 
  MMETSP1061-20121228|13355_1 209 YTVKARSLVLATGAMGRSMPYLPGEEkylgqgvsYCATCDGAFY---RGSEVAVYGATGEAVEEAMFLTKFASTVHWITPTDIkgYLERLDDGTATSaetnslfdpssLRDLLDKPNVKHHNKARLREVEGDVSGVTGVRILPVeaaddIGIPVEGAFIYGAGggSKPITDFL--GGTGIALDESGGVVTDdAMESTSHKGVFAIGDIR 412
                  4578999*******998887899876432222225667777775...45789**************************98885225888887654321111111111255678999*****************9966665544411122344555789999862256666665..579******9877765168899**********85 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1     3e-05    0.0038       1      37 [.     107     142 ..     107     156 .. 0.90
   2 ?    4.1   0.0     0.025       3.3     126     193 ..     158     225 ..     150     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3e-05
    TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGG 37 
                  dv ++G G AG + al   +a   + v+l+K ++iG 
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRAD-LSTVILDKNEAIGA 142
                  799******************9.999*********96 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.025
    TIGR01813 126 aasGaeivqklskkakkegvelrlnskvedlikddqgqvtGvkvkekgkkikikaakaVvlatGGfgs 193
                  + +G e+ q+++k+a ++g ++  +++v  +  +d+g       k  +   ++++a++ vlatG  g+
  MMETSP1061-20121228|13355_1 158 NMPGLELLQQMKKQAVEYGTRICDRAQVFMIEIQDDGGDENPYNKVVYCPDYTVKARSLVLATGAMGR 225
                  5789***************************9999987776666777778889999999999998776 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.1   3.4e-06   0.00043       1      34 [.     107     140 ..     107     147 .. 0.91
   2 ?   -1.6   0.0       1.9   2.4e+02      86     140 ..     163     224 ..     141     241 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 3.4e-06
    TIGR01790   1 DliviGgGlAglaiAlelakpglrvqlieaapkl 34 
                  D+++iGgG+Ag+  Al  ++++l+ ++++ ++ +
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDKNEAI 140
                  9**************************9977665 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 1.9
    TIGR01790  86 qlkeellqkleea.vlwleak...aikveadavsls...lvecaggqriqarlVidargfka 140
                  +l ++++++++e  + + +++    i+++ d+ +++    v + ++ +++ar+ + a+g+  
  MMETSP1061-20121228|13355_1 163 ELLQQMKKQAVEYgTRICDRAqvfMIEIQDDGGDENpynKVVYCPDYTVKARSLVLATGAMG 224
                  45566666666555555554422235666665554411157788999999999999999765 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.27        35       2      21 ..     108     127 ..     107     141 .. 0.79
   2 !   15.5   0.0   9.4e-06    0.0012     241     285 ..     369     414 ..     349     433 .. 0.88

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.27
    TIGR03385   2 ivivGgvaaGasaAsrvrRL 21 
                  + i+Gg+ aG ++A    R 
  MMETSP1061-20121228|13355_1 108 VAIIGGGPAGCTCALYTSRA 127
                  679***********877775 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 9.4e-06
    TIGR03385 241 vGvkPnselikssqlklgkkGaikvnekfq.tsveniyaiGDvaes 285
                   G kP ++++  ++++l++ G +++++ ++ ts + ++aiGD+ ++
  MMETSP1061-20121228|13355_1 369 GGSKPITDFLGGTGIALDESGGVVTDDAMEsTSHKGVFAIGDIRNT 414
                  4889***********************997699*********9765 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   8.2e-06    0.0011       1      40 [.     108     147 ..     108     156 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.2e-06
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsf 40 
                  v+++GgG AG+++A+  +ra + + +l+  +++G  a   
  MMETSP1061-20121228|13355_1 108 VAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGALAVTS 147
                  89*******************************9888655 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.2   3.1e-05     0.004       2      66 ..     107     166 ..     106     174 .. 0.77
   2 ?    0.3   0.0      0.47        60     254     320 ..     153     222 ..     141     224 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.1e-05
    TIGR03378   2 DviiiGgGlaGlscalrlaeaGkktaiiaaGqsalhFssGslDllsklpdgkaveqpldaleala 66 
                  Dv+iiGgG aG +cal   +a   t+i+ +  +      G+l + s++ +   v++ + +le l+
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDKNEA-----IGALAVTSHIANYPGVDRNMPGLELLQ 166
                  9*************************9987653.....366666666666666666666666555 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.47
    TIGR03378 254 ptlPPsllGiRleealkrrFeklGGvllkgdevlraeleen...rvariftr..nhedipleakqfvlasGs 320
                  p +   + G+ l +++k++ ++ G  +    +v   e++++   +  + + +     d +++a+++vla+G+
  MMETSP1061-20121228|13355_1 153 PGVDRNMPGLELLQQMKKQAVEYGTRICDRAQVFMIEIQDDggdE--NPYNKvvYCPDYTVKARSLVLATGA 222
                  555556678899999999999999999999999999988873331..2333311467999**********96 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     2e-05    0.0025       2      32 ..     107     137 ..     106     143 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2e-05
    TIGR02023   2 dvlviGggpsGaaaaetLakagievillere 32 
                  dv++iGggp+G + a    +a+ ++++l+++
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDKN 137
                  8****************************98 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0     2e-05    0.0025       1      38 [.     107     144 ..     107     194 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2e-05
    TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgA 38 
                  +va+IG+G Ag+++al  +r+ ++  +l+k+e++++ A
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGALA 144
                  69*****************************9999876 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.1e-05    0.0026       1      34 [.     107     139 ..     107     174 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.1e-05
    TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalveakaa 34 
                  d++I+GgG++G ++Al  ++ adl++ ++++++a
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSR-ADLSTVILDKNEA 139
                  9***************9995.56******99865 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   0.00084      0.11       1      30 [.     107     136 ..     107     149 .. 0.91
   2 !    5.6   0.0    0.0076      0.97     128     208 ..     161     241 ..     154     269 .. 0.81
   3 ?   -3.1   0.1       3.3   4.2e+02     348     369 ..     386     410 ..     377     412 .. 0.62

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00084
    TIGR01812   1 DvvivGaGlAGlraAveaakkglkvavisk 30 
                  Dv i+G+G AG+  A+ + +++l+++++ k
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDK 136
                  89************************9987 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0076
    TIGR01812 128 GhallhtlyeellklgveifeeyfvldliledkevkGvvaidlktgevvvlrakavvlatGGagrvyktttnavivtGdGl 208
                  G  ll+++ ++++++g++i ++ +v+ + ++d+        ++      +++a++ vlatG +gr   +   +    G+G+
  MMETSP1061-20121228|13355_1 161 GLELLQQMKKQAVEYGTRICDRAQVFMIEIQDDGGDENPYNKVVYCPDYTVKARSLVLATGAMGRSMPYLPGEEKYLGQGV 241
                  88999***************999999888887766667777888888899**************98766666666666665 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 3.3
    TIGR01812 348 dkkGevile...nesivkGlfaaGE 369
                  d +G v+++   +++  kG+fa+G+
  MMETSP1061-20121228|13355_1 386 DESGGVVTDdamESTSHKGVFAIGD 410
                  555554444333344579****997 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.1    0.0037      0.47       2      34 ..     105     138 ..     104     194 .. 0.68
   2 ?    2.1   0.0      0.11        14     175     210 ..     210     245 ..     159     263 .. 0.84
   3 ?    2.4   0.0     0.083        11     334     358 ..     389     414 ..     384     432 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0037
    TIGR00551   2 eadvvviGsGaagLsaalalaekyr.vvvlskae 34 
                  e+dv++iG+G ag + al  +++    v+l k+e
  MMETSP1061-20121228|13355_1 105 ECDVAIIGGGPAGCTCALYTSRADLsTVILDKNE 138
                  69*****************999988455555554 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.11
    TIGR00551 175 vlhakavvlatGGlgklyaattnpkvstGdgialal 210
                  +++a++ vlatG +g+   +  ++++  G+g++  +
  MMETSP1061-20121228|13355_1 210 TVKARSLVLATGAMGRSMPYLPGEEKYLGQGVSYCA 245
                  789**************9999999999999998654 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.083
    TIGR00551 334 GGisvdayg.rtevkGLYaiGevast 358
                  GG+++d+ +  t+ kG++aiG+   t
  MMETSP1061-20121228|13355_1 389 GGVVTDDAMeSTSHKGVFAIGDIRNT 414
                  99999876516899*******98776 PP

>> TIGR01176  fum_red_Fp: fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1      0.29        37       2      26 ..     104     128 ..     103     185 .. 0.86
   2 !   12.1   0.1   8.8e-05     0.011     181     379 ..     210     411 ..     157     426 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.29
    TIGR01176   2 lqadiavigaggaglraaiaaaean 26 
                  ++ d+a+ig+g ag  +a+  ++a+
  MMETSP1061-20121228|13355_1 104 IECDVAIIGGGPAGCTCALYTSRAD 128
                  6789**********99998777664 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 8.8e-05
    TIGR01176 181 tikadavvlatggagrvyrfntnggivtgdgmal.alragvplrdmefvqyhptglpgtgilltegargeggilvnkdgyrylqdyglgketplgepknkymelgprdkvsqafvheqrkgntidtplgdvvyl.dlrhlgeellde.rlpficela.kayvnvdpvkelipvrpvvhytmggietdince.trikglfavgec 379
                  t+ka ++vlatg  gr  ++    +   g+g++  a   g+  r  e   y  tg      ++     +   ++   d   yl+  + g  t  +e +  +     rd + +  v+ ++k + + +  gdv  +  +r l  e  d+  +p    +   a  +  p+ + +    ++    gg+ td   e t  kg+fa+g++
  MMETSP1061-20121228|13355_1 210 TVKARSLVLATGAMGRSMPYLPGEEKYLGQGVSYcATCDGAFYRGSEVAVYGATGEAVEEAMFLTKFASTVHWITPTDIKGYLERLDDGTATS-AETNSLFDPSSLRDLLDKPNVKHHNKAR-LREVEGDVSGVtGVRILPVEAADDiGIPVEGAFIyGAGGGSKPITDFLGGTGIALDESGGVVTDDAMEsTSHKGVFAIGDI 411
                  89*****************************99637889****************99887666666667789999999999999999999998.6777777777889999999999999987.456678876541577777666554134433322212334567777777777777777788777766652556788887765 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.1     0.088        11       3      33 ..     106     136 ..     104     144 .. 0.88
   2 ?   -2.0   0.0         2   2.6e+02     141     207 ..     210     280 ..     198     288 .. 0.66
   3 !    8.8   0.0    0.0011      0.14     287     339 ..     378     430 ..     345     448 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.088
    TIGR01438   3 ydliviGgGsGGlaaakeaaklgakvllldf 33 
                   d+ +iGgG+ G ++a  ++  +   ++ld 
  MMETSP1061-20121228|13355_1 106 CDVAIIGGGPAGCTCALYTSRADLSTVILDK 136
                  6899************999999999998886 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 2
    TIGR01438 141 ilsakrvliatGlrpkypddieGake.......lsitsddlfslkkvpGktlvvGasyvalecaGflaalgldv 207
                  ++ a+ +++atG   + +  ++G+ +       ++ t d  f          v Ga+  a+e a fl+ ++  v
  MMETSP1061-20121228|13355_1 210 TVKARSLVLATGAMGRSMPYLPGEEKylgqgvsYCATCDGAFY---RGSEVAVYGATGEAVEEAMFLTKFASTV 280
                  6778888999998888777788875411111114555555553...3344567777777788777777776665 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.0011
    TIGR01438 287 lenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklla 339
                  l   g+ ++++ g +  d +e t+ ++++a+Gdi +   +   va   G + a
  MMETSP1061-20121228|13355_1 378 LGGTGIALDESGGVVTDDAMESTSHKGVFAIGDIRNTPFKQVVVAASDGCVAA 430
                  56679999**************************9988777777777776655 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00025     0.032     381     426 ..     107     151 ..      96     196 .. 0.74
   2 ?   -2.5   0.0         2   2.6e+02     466     535 ..     215     285 ..     209     289 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00025
    TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpg 426
                   v ++GgGPaG + a   +r   + ++l+++e++G  ++++++++ 
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDKNEAIGA-LAVTSHIAN 151
                  699*******************9*99****999975.444444433 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2
    TIGR03997 466 avvlatGsrparpd.lagadse..rvvtvrevltgeaevggrvlvvDelGfhqatsvaellaargkkveiits 535
                   +vlatG+  + ++ l+g+++   + v+     +g+   g++v v+  +G +     a +l + + +v+ it+
  MMETSP1061-20121228|13355_1 215 SLVLATGAMGRSMPyLPGEEKYlgQGVSYCATCDGAFYRGSEVAVYGATGEAV--EEAMFLTKFASTVHWITP 285
                  57999999987655167744431134667777888888999999999999754..556788888888888876 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00017     0.022     274     316 ..     380     424 ..     326     443 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00017
    TIGR03452 274 aaGvevdedgrvkvde.yqrtsaegvfalGdvss.pyqlkhvana 316
                   +G+++de g v  d+  + ts +gvfa+Gd+ + p++   va +
  MMETSP1061-20121228|13355_1 380 GTGIALDESGGVVTDDaMESTSHKGVFAIGDIRNtPFKQVVVAAS 424
                  47999999887777662677***********97537777777665 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00037     0.048       1      35 [.     107     140 ..     107     206 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00037
    TIGR01984   1 dviivGgglvGlslAlaLsrksklkialieaksae 35 
                  dv+i+Ggg++G + Al  sr   l++ ++++++a 
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRAD-LSTVILDKNEAI 140
                  89**************998887.*******99864 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.2   0.00043     0.056       2      34 ..     107     138 ..     106     151 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00043
    TIGR00136   2 dviviGaGhaGieaalaaarlgaktllltlnld 34 
                  dv +iG+G aG+  al ++r ++ t +l +n +
  MMETSP1061-20121228|13355_1 107 DVAIIGGGPAGCTCALYTSRADLSTVILDKN-E 138
                  899*********************9988765.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        56  (0.0136519); expected 4.1 (0.001)
Passed Fwd filter:                        32  (0.00780107); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              32  [number of targets reported over threshold]
# CPU time: 0.60u 0.16s 00:00:00.76 Elapsed: 00:00:00.51
# Mc/sec: 1164.61
//
Query:       MMETSP1061-20121228|13358_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 607.15
//
Query:       MMETSP1061-20121228|13360_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 936.49
//
Query:       MMETSP1061-20121228|13359_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.057   11.1   1.6       0.22    9.2   1.1    2.0  1  TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family


Domain annotation for each model (and alignments):
>> TIGR01168  YSIRK_signal: gram-positive signal peptide, YSIRK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   1.1   5.4e-05      0.22      21      34 ..      50      66 ..      50      70 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 5.4e-05
    TIGR01168 21 vaSVlvaslffgg...q 34
                 +aSVl+a+l++g+   +
  MMETSP1061-20121228|13359_1 50 AASVLAATLVLGAaveP 66
                 79**********95544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       384  (0.0936129); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1267.10
//
Query:       MMETSP1061-20121228|13369_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 323.97
//
Query:       MMETSP1061-20121228|13361_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-22   77.4   0.0    1.8e-22   76.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    9.6e-06   23.0   0.0    1.9e-05   22.0   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.9   0.0   8.6e-26   1.8e-22       3     201 ..     239     427 ..     237     432 .. 0.90

  Alignments for each domain:
  == domain 1    score: 76.9 bits;  conditional E-value: 8.6e-26
    TIGR03903   3 ghkvaik.llRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykq 201
                  g+kvaik +lR+d + +    a    e+++   +shP++v L+D  e +d   F v e++ G  l +++  + + +  +   L +++L a+a  h++ v h D+kP+n+++  ++++s  kv DFG +a         e+ lt+     G+P + +Pe L   p   ++D+++ G i++  L G+    G s +e++ k 
  MMETSP1061-20121228|13361_1 239 GKKVAIKcVLRKDLPPN--DDAAIYDEVSIMSSMSHPHVVPLIDFFEEKD-CYFLVMELMSGGDLFDRIGKKKSYTEDDARDLSVKMLKAMAYCHAHKVAHCDMKPKNLLLMSEEDHSYIKVADFGFAAHCHT-----EKCLTK---QCGTPFFVSPEILMRQPYDQQTDMWSVGCIIFLLLSGNLPFMGRSQKELFRKI 427
                  789***96689996643..3466778*******************99888.99*************************************************************************9985432.....445665...57******************************************999987665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   9.3e-09   1.9e-05      47     138 ..     263     365 ..     259     393 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 9.3e-09
    TIGR03724  47 EarllseakkagvntPvvydvdpee.kkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv..kddkly..liDfGLgkk 138
                  E+ ++s++ +  v +P++ ++++++ + +vme ++g +l d + +k+        +l  ++ ++++ +H ++++h D+ ++N+++  ++d+ y  + DfG + +
  MMETSP1061-20121228|13361_1 263 EVSIMSSMSHPHV-VPLIDFFEEKDcYFLVMELMSGGDLFDRIGKKKSyteddarDLSVKMLKAMAYCHAHKVAHCDMKPKNLLLmsEEDHSYikVADFGFAAH 365
                  7888888888764.899988876652789**********99999887789999999999************************995334444411579999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 2062.80
//
Query:       MMETSP1061-20121228|13362_1  [L=986]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-05   20.4   0.0       0.12    9.2   0.0    2.6  2  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   2.9e-05      0.12      22     113 ..      53     144 ..      42     164 .. 0.78
   2 !    8.2   0.0     6e-05      0.25      55     136 ..     216     298 ..     201     312 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 2.9e-05
    TIGR03866  22 tisvidletlevvktlkvGerPrGitlskdgkllyvcasdsdavqvldaeteevlkelpsGedPelfv.lepdgkllyianeddalvtvvdie 113
                  ++ + d+e+ ++vk ++v e P   +     k+ +v+asd+ + ++++ +t e +ke+ +  d  +   ++p+     ++  dd  + + d +
  MMETSP1061-20121228|13362_1  53 NVMIWDTESGSLVKSFEVSELPVRCAKFVARKQWFVAASDDMRFRIFNYNTMEKIKEFEAHADYIRCLeVHPS-LPYVLSSSDDMCIKLWDWD 144
                  78899*****************888888889999***********************9999886543303333.2333455566666666655 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 6e-05
    TIGR03866  55 lyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianeddalvtvvdiekrkvlaeidvGvePe.GlavsPdg 136
                   +++ sd+++v++ d +t++++++l    +    v+   +  +  +  +d +v +   ++ ++ + ++ G+e    la sP +
  MMETSP1061-20121228|13362_1 216 YILSGSDDQTVKIWDYQTKSIVHSLDGHTNNVCSVMFHPKLPIIASASEDGTVRIWQSTTYRAETTLNYGMERAwALAASPQS 298
                  4467899******************9877766666555556667777788999999999999999999999864367888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (986 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 3827.68
//
Query:       MMETSP1061-20121228|13374_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1827.54
//
Query:       MMETSP1061-20121228|13403_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1313.29
//
Query:       MMETSP1061-20121228|13411_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2292.21
//
Query:       MMETSP1061-20121228|13427_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       406  (0.0989761); expected 82.0 (0.02)
Passed bias filter:                      262  (0.0638713); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 691.80
//
Query:       MMETSP1061-20121228|13453_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|13449_1  [L=792]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-09   34.8   8.8       0.17    9.2   0.0    5.6  5  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    2.2e-07   29.3   7.4       0.15   10.5   0.0    6.3  6  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
      5e-06   24.1   5.0        1.5    6.4   0.0    5.2  6  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00013      0.17     122     199 ..     383     468 ..     376     477 .. 0.81
   2 !    7.1   1.1   0.00054      0.74      29      88 ..     478     545 ..     473     556 .. 0.75
   3 !    5.4   0.0    0.0019       2.6      28      92 ..     561     628 ..     552     642 .. 0.59
   4 !    7.9   0.1   0.00033      0.44     127     168 ..     642     683 ..     627     693 .. 0.86
   5 !    4.7   0.0    0.0029         4      65      99 ..     703     737 ..     695     741 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00013
    TIGR02521 122 feaAiedpkYeqparsyeNaglcalkagdtekaekyltralki........dpkrpesllelaelklkkgqyaeAralleryqqtv 199
                  +++A++ +k ++  + ++ ++ c++k+g++e   k l+ralk          p+ + ++ ++a l++  g+y +A a+le + ++ 
  MMETSP1061-20121228|13449_1 383 MRKALKGEKDPSVVEIFTRIAGCLRKKGKHELSIKILKRALKTyrevlgdtHPTVSITVDSIASLYITVGEYGKASAILEEVVKLK 468
                  5788888888999999*************************86333333225667788999*****************99877654 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00054
    TIGR02521  29 kaakirvqLaleYleqgdlekAkenlekAleldpk........dadanlalAlyyqqlgelekAeesf 88 
                  ++a+   +La++Y  ++++ kA +nl+kA ++ ++        +  +   +Al+yq +g+ +kA+ ++
  MMETSP1061-20121228|13449_1 478 EVAASLSELATSYECAEHYSKAMKNLKKAYKIYADivgeygekSILTLERIALIYQATGQFKKAAIAY 545
                  56667779*********************987665222111114455667799999999999998777 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0019
    TIGR02521  28 ekaakirvqLaleYleqgdlekAkenlekAlel...dpkdadanlalAlyyqqlgelekAeesfrkAl 92 
                   ++a+++  L+++  ++++ +kA + +++Al++   + k+ +  +++A +  +l   +kA+++  +A+
  MMETSP1061-20121228|13449_1 561 PTIADTYFHLGVSLRQSNQRDKAFKCIKQALNIyvgEGKEIHDVQMIAEVMHELAVIHKANHNMGDAV 628
                  45566666677776667777777777777766522222333333455555555555555555555555 PP

  == domain 4    score: 7.9 bits;  conditional E-value: 0.00033
    TIGR02521 127 edpkYeqparsyeNaglcalkagdtekaekyltralkidpkr 168
                   +p+Y+  a++++ +g++  + +++++a +y+ +al+i +k+
  MMETSP1061-20121228|13449_1 642 GQPEYPYIAQALNHLGVTEFEVKNHNRALNYFMEALAIYEKK 683
                  589*********************************975544 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.0029
    TIGR02521  65 adanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                  a++    +l++++l+++++A ++f +A ++ ++ng
  MMETSP1061-20121228|13449_1 703 AEVLYNTGLVFESLRNNKRARNAFAEAARIFKENG 737
                  45555567888888888888888888888877776 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00011      0.15      45     104 ..     318     382 ..     297     384 .. 0.88
   2 ?    1.0   0.0     0.098   1.3e+02      54     104 ..     418     466 ..     404     472 .. 0.82
   3 ?    1.6   0.2     0.062        85      71     107 ..     475     511 ..     443     527 .. 0.60
   4 !    8.8   0.0   0.00038      0.51      49     106 ..     532     594 ..     527     602 .. 0.86
   5 !    4.3   0.0    0.0095        13      74     107 ..     562     595 ..     559     638 .. 0.53
   6 !    4.2   0.2      0.01        14      33      74 ..     644     685 ..     641     736 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00011
    TIGR02795  45 lGealyakkkykdAakaflevvkkyp.....ksekapdallklgeslqelgqkekAkktlqevik 104
                  lG ++ ++++y+++ +  ++vv+ y+     +++k+ da l+l++++++ g+++ A  t++ v++
  MMETSP1061-20121228|13449_1 318 LGDLYEENHEYRQSLRLHKDVVSVYSanlgdDNQKTLDARLRLAKVQENAGDMDGAIITYHYVMN 382
                  899********************99733333689**************************99986 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.098
    TIGR02795  54 kykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevik 104
                   +k+A k+++ev+    +++ ++     +++++ + g+  kA ++l+ev+k
  MMETSP1061-20121228|13449_1 418 ILKRALKTYREVLG--DTHPTVSITVDSIASLYITVGEYGKASAILEEVVK 466
                  56778888888887..67888888888899999999999999999999987 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.062
    TIGR02795  71 ksekapdallklgeslqelgqkekAkktlqevikrYP 107
                  +s+ ++ +l +l++s++  ++ +kA k l++  k Y+
  MMETSP1061-20121228|13449_1 475 TSKEVAASLSELATSYECAEHYSKAMKNLKKAYKIYA 511
                  4566666677777776666666666666666555554 PP

  == domain 4    score: 8.8 bits;  conditional E-value: 0.00038
    TIGR02795  49 lyakkkykdAakaflevvkkyp.....ksekapdallklgeslqelgqkekAkktlqevikrY 106
                  + a++++k+Aa a+l v++  +     +++  +d  + lg+sl +++q +kA k +++  + Y
  MMETSP1061-20121228|13449_1 532 YQATGQFKKAAIAYLGVLRGKKralggNHPTIADTYFHLGVSLRQSNQRDKAFKCIKQALNIY 594
                  778999***********9987533333799**************************9988887 PP

  == domain 5    score: 4.3 bits;  conditional E-value: 0.0095
    TIGR02795  74 kapdallklgeslqelgqkekAkktlqevikrYP 107
                    +d  + lg+sl +++q +kA k +++  + Y 
  MMETSP1061-20121228|13449_1 562 TIADTYFHLGVSLRQSNQRDKAFKCIKQALNIYV 595
                  4445555555555555555555555555444443 PP

  == domain 6    score: 4.2 bits;  conditional E-value: 0.01
    TIGR02795  33 PkstlapnAqYwlGealyakkkykdAakaflevvkkypksek 74 
                  P+ ++ ++A   lG + ++ k+ ++A ++f e+++ y+k+  
  MMETSP1061-20121228|13449_1 644 PEYPYIAQALNHLGVTEFEVKNHNRALNYFMEALAIYEKKRA 685
                  667778888888888888888888888888888887776543 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0015       2.1      54     117 ..     356     427 ..     350     440 .. 0.81
   2 ?    1.2   0.0     0.044        60      57     117 ..     401     427 ..     391     472 .. 0.57
   3 ?   -2.1   0.1      0.45   6.1e+02      58      82 ..     486     510 ..     474     517 .. 0.67
   4 !    6.4   0.0    0.0011       1.5      84     133 ..     562     612 ..     525     615 .. 0.66
   5 !    4.3   0.1    0.0047       6.4      57     122 ..     613     686 ..     605     695 .. 0.64
   6 !    5.6   0.0    0.0019       2.6      83     120 ..     700     737 ..     683     749 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0015
    TIGR02552  54 ywlgLaaclqalkeyeeAiaaYalaaald.....lddprpv...yhaaecllalgekeeAlkaLklaieiae 117
                    l+La +   ++++++Ai +Y + + ++     ++dp++v    ++a cl ++g+ e + k Lk+a+++ +
  MMETSP1061-20121228|13449_1 356 ARLRLAKVQENAGDMDGAIITYHYVMNMRkalkgEKDPSVVeifTRIAGCLRKKGKHELSIKILKRALKTYR 427
                  56899*****************9998876333245788764332789*******************998765 PP

  == domain 2    score: 1.2 bits;  conditional E-value: 0.044
    TIGR02552  57 gLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae 117
                  +                                  +a cl ++g+ e + k Lk+a+++ +
  MMETSP1061-20121228|13449_1 401 R----------------------------------IAGCLRKKGKHELSIKILKRALKTYR 427
                  3..................................44555555555555555555554433 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.45
    TIGR02552  58 LaaclqalkeyeeAiaaYalaaald 82 
                  La ++  +++y++A+++ + a++++
  MMETSP1061-20121228|13449_1 486 LATSYECAEHYSKAMKNLKKAYKIY 510
                  5555566666666666555555554 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.0011
    TIGR02552  84 ddprpvyhaaecllalgekeeAlkaLklaieiae.ekeeyselkeraeaml 133
                    ++ ++h++++l + +++ +A k++k a++i   e +e ++++  ae m 
  MMETSP1061-20121228|13449_1 562 TIADTYFHLGVSLRQSNQRDKAFKCIKQALNIYVgEGKEIHDVQMIAEVMH 612
                  33468*************************997657777777777666665 PP

  == domain 5    score: 4.3 bits;  conditional E-value: 0.0047
    TIGR02552  57 gLaaclqalkeyeeAiaaYalaaald..lddprpvy......haaecllalgekeeAlkaLklaieiaeekeey 122
                   La+ ++a +++ +A+++++   a++  l +p+ +y      h+++  +++++ ++Al+ +  a++i e+k++ 
  MMETSP1061-20121228|13449_1 613 ELAVIHKANHNMGDAVKTFKQEIAVRrkLGQPEYPYiaqalnHLGVTEFEVKNHNRALNYFMEALAIYEKKRAD 686
                  57777777777777777776544444114555544444444466777778888888888888888887777655 PP

  == domain 6    score: 5.6 bits;  conditional E-value: 0.0019
    TIGR02552  83 lddprpvyhaaecllalgekeeAlkaLklaieiaeeke 120
                   d+++++y ++ ++  l ++++A++a++ a++i +e+ 
  MMETSP1061-20121228|13449_1 700 TDQAEVLYNTGLVFESLRNNKRARNAFAEAARIFKENG 737
                  5788999*************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (792 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.10s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 3074.57
//
Query:       MMETSP1061-20121228|13465_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1715.86
//
Query:       MMETSP1061-20121228|13502_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|13514_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|13504_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-79  264.1   6.3    3.9e-79  263.8   4.3    1.1  1  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family
    1.3e-11   42.6   0.3    2.7e-11   41.5   0.2    1.5  1  TIGR03127 RuMP_HxlB: 6-phospho 3-hexuloisomerase
    1.1e-07   29.8   0.2    2.3e-07   28.8   0.2    1.6  1  TIGR00441 gmhA: phosphoheptose isomerase
    5.3e-06   23.5   2.8    9.9e-06   22.6   0.2    2.3  3  TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase
    1.7e-05   21.3   0.0    2.1e-05   21.0   0.0    1.1  1  TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
     0.0066   13.2   0.1      0.011   12.5   0.0    1.3  1  TIGR02128 G6PI_arch: bifunctional phosphoglucose/phosphomannose isomerase
  ------ inclusion threshold ------
      0.016   11.9   1.5      0.018   11.7   0.2    1.7  2  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.8   4.3   6.7e-82   3.9e-79       1     267 [.      87     355 ..      87     356 .. 0.97

  Alignments for each domain:
  == domain 1    score: 263.8 bits;  conditional E-value: 6.7e-82
    TIGR00393   1 GklvvvGiGksgligkkivatlastGtpsfflhPtealhGdlGmvekrdvvllisysGeskeldklipslkrlsvklialtgkpnsslaraadvvldikvekeacPlnlaPtsstvvtlvlGdalavallkarnfseedfakshPgGalGrkllvkvkdllqtdd.lPlvaktaslkdallelsekrlGlavvvdeneqlkGvltdGdlrr..allgggalkkevkdvmtlggktlksdallveakellkkrkitslvvvddenkllGvl 267
                  Gk+vv+G+Gksg++g ki+atlas Gtp++flh +ealhGdlGmv+++d+vl+i+++Ge++e+  +    +r + k+i +tgk  ssla ++dv l+ ++  ea  l+laPtsst v l+lGdalaval+kar f+ee+fa++hPgG lGr l++  ++l++++d l  v   a ++ ++  ++  ++G+++v +e+  ++G ++d d+r   ++ gg+al+++++++m   +kt+ ++  +ve  +++++ k++s++v d++++llG+l
  MMETSP1061-20121228|13504_1  87 GKVVVTGLGKSGHVGAKIAATLASVGTPALFLHAAEALHGDLGMVTSNDIVLAIAFGGETREVLGVCKFARRTGLKVIGMTGKLGSSLAELTDVTLNASITGEADSLGLAPTSSTSVCLALGDALAVALMKARRFKEENFAQFHPGGRLGRNLILA-EELMHKKDdLNVVSAEAGFHTVMEAVTSPNFGIVAVTNEEGIVQGSVSDEDIRGalLKHGGEALTMKAAELMNDCPKTVTPGVKAVEVGHMMEQFKMKSVLVTDEKDQLLGLL 355
                  9*******************************************************************************************************************************************************9885.788888777********************************************965667899*************************************************98 PP

>> TIGR03127  RuMP_HxlB: 6-phospho 3-hexuloisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.5   0.2   4.6e-14   2.7e-11      15     175 ..      71     230 ..      58     232 .. 0.81

  Alignments for each domain:
  == domain 1    score: 41.5 bits;  conditional E-value: 4.6e-14
    TIGR03127  15 ikeeevaklvdkitkakrifvaGaGRSglvgkafamRLmhlGlkvyvv..Getit...paikegDlliiiSgSGetksvvkvakkakelgakviaittekestlgkladvvvelpaatkkdkeeekksiqplgslFeqsllifldavilelmkkkkldeeelkkrH 175
                  ++ + ++++   ++   ++ v+G G+Sg vg  +a  L  +G  + ++   e +      ++ +D++++i   Get++v+ v k a+  g kvi +t + +s+l++l+dv+++   + ++d+      ++p +s+  +  l + da+ + lmk+ + +ee+  + H
  MMETSP1061-20121228|13504_1  71 LDLSFASAVKMILDCPGKVVVTGLGKSGHVGAKIAATLASVGTPALFLhaAEALHgdlGMVTSNDIVLAIAFGGETREVLGVCKFARRTGLKVIGMTGKLGSSLAELTDVTLNASITGEADSL----GLAPTSST--SVCLALGDALAVALMKARRFKEENFAQFH 230
                  55555555555566678**************************99886335666511145789**********************************************99876666555444....46776665..7888999************9999998887 PP

>> TIGR00441  gmhA: phosphoheptose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.2     4e-10   2.3e-07      78     131 ..     132     185 ..      86     194 .. 0.90

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 4e-10
    TIGR00441  78 qkgdvllGlstsGnsknvlkaleaakdkglkvialaGkdGGklkeladvelivp 131
                  + +d++l ++  G++++vl   + a+  glkvi+++Gk G  l+el+dv+l  +
  MMETSP1061-20121228|13504_1 132 TSNDIVLAIAFGGETREVLGVCKFARRTGLKVIGMTGKLGSSLAELTDVTLNAS 185
                  579**********************************************99765 PP

>> TIGR00274  TIGR00274: N-acetylmuramic acid 6-phosphate etherase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.0      0.12        69      28      73 ..      60     102 ..      54     129 .. 0.71
   2 !   22.6   0.2   1.7e-08   9.9e-06     123     179 ..     130     186 ..      83     194 .. 0.85
   3 ?   -2.0   0.0      0.55   3.2e+02      84     120 ..     288     326 ..     259     333 .. 0.63

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.12
    TIGR00274  28 edklvalaveevlpdiaaavevisealqkGGrliyiGaGtsGrlGv 73 
                  e + v  a e+     a av++i    +  G+++ +G G sG +G 
  MMETSP1061-20121228|13504_1  60 ESEAVRNAGERLDLSFASAVKMIL---DCPGKVVVTGLGKSGHVGA 102
                  555555555555555666666664...4579999********9995 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1.7e-08
    TIGR00274 123 rltkndvvvgiaasGrtPyviaaleyarklGaktiaiacnpesavskqadvaieviv 179
                   +t+nd+v++ia +G t  v +  ++ar+ G k i+++ + +s +++ +dv+++  +
  MMETSP1061-20121228|13504_1 130 MVTSNDIVLAIAFGGETREVLGVCKFARRTGLKVIGMTGKLGSSLAELTDVTLNASI 186
                  589***********************************************9987644 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.55
    TIGR00274  84 gvsselvkGil..aGGeeallraveGledseeagvedlk 120
                  +vs e ++G l   GGe   ++a+e ++d  +++   +k
  MMETSP1061-20121228|13504_1 288 SVSDEDIRGALlkHGGEALTMKAAELMNDCPKTVTPGVK 326
                  566666666442246666667788887777776655555 PP

>> TIGR01135  glmS: glutamine-fructose-6-phosphate transaminase (isomerizing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.7e-08   2.1e-05     293     428 ..      88     225 ..      55     259 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 3.7e-08
    TIGR01135 293 ritivacGtsyhaglvakylleslakipvevevaSEfryrkpvvkkktlviaisQSGETaDtlealrlakekgakvlaivNvkeSalareadavlltrAGpE...igVAsTKaftaqlvvlllLalalakargalkaee 428
                  ++ + + G s h g      l s+ +     + a   +    +v+++++v+ai+  GET + l   + a++ g+kv++++   +S+la  +d++l      E    g A T +    l++  +La+al kar+ + +e+
  MMETSP1061-20121228|13504_1  88 KVVVTGLGKSGHVGAKIAATLASVGTPALFLHAAEALHGDLGMVTSNDIVLAIAFGGETREVLGVCKFARRTGLKVIGMTGKLGSSLAELTDVTLNASITGEadsLGLAPTSSTSVCLALGDALAVALMKARRFK-EEN 225
                  66677777777766666666666665555556666667777899***************************************************9876555233689999888888888888998887777543.333 PP

>> TIGR02128  G6PI_arch: bifunctional phosphoglucose/phosphomannose isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.8e-05     0.011      20     101 ..      85     168 ..      63     183 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.8e-05
    TIGR02128  20 iveeivisGmGGSgiagdlleelllekslevpvf.vvkdyrlp...akvdektlliavSYSGnTeETlsaveeakkkgakviaiTs 101
                     ++v++G+G Sg +g  + + l ++   +p + +     l      v+++  ++a+ + G T E l  ++ a + g kvi +T 
  MMETSP1061-20121228|13504_1  85 CPGKVVVTGLGKSGHVGAKIAATLASVG--TPALfLHAAEALHgdlGMVTSNDIVLAIAFGGETREVLGVCKFARRTGLKVIGMTG 168
                  3569**********99987777777763..45442444444441125789999****************************99984 PP

>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.52   3.1e+02     333     352 ..     127     146 ..     118     165 .. 0.72
   2 ?   11.7   0.2   3.1e-05     0.018      92     199 ..     254     363 ..     242     366 .] 0.73

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.52
    TIGR01302 333 DGGirysGdivKalalGada 352
                  D G+  s div a+a G+++
  MMETSP1061-20121228|13504_1 127 DLGMVTSNDIVLAIAFGGET 146
                  55667777777777777654 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 3.1e-05
    TIGR01302  92 tvsPettvedvlelkekkgisgvpvvedgkeegklvGivtkkdlrfvkdk......skkvsevmtkeevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdieka 199
                  +vs e+  ++v e  ++ ++  v v+++   eg + G v+++d+r +  k      ++k  e+m  +   tv+ ++++ e+ +++e+ k++ ++v d++++l+gl+   d++ a
  MMETSP1061-20121228|13504_1 254 VVSAEAGFHTVMEAVTSPNFGIVAVTNE---EGIVQGSVSDEDIRGALLKhggealTMKAAELMN-DCPKTVTPGVKAVEVGHMMEQFKMKSVLVTDEKDQLLGLLRLYDLQVA 363
                  5566666666777777777766666666...5689999999999865432111111455666666.66678889999999*************************999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1610.27
//
Query:       MMETSP1061-20121228|13529_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|13538_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 2060.50
//
Query:       MMETSP1061-20121228|13551_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 591.08
//
Query:       MMETSP1061-20121228|13550_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2002.59
//
Query:       MMETSP1061-20121228|13549_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-11   41.5   0.0      4e-11   40.6   0.0    1.5  1  TIGR02381 cspD: cold shock domain protein CspD
    7.5e-05   19.9   0.1    9.6e-05   19.5   0.1    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    0.00015   18.7   0.0    0.00033   17.6   0.0    1.4  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
    0.00031   17.7   0.0    0.00042   17.3   0.0    1.2  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
     0.0008   16.9   0.0     0.0029   15.1   0.0    1.7  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor


Domain annotation for each model (and alignments):
>> TIGR02381  cspD: cold shock domain protein CspD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0   4.9e-14     4e-11       3      58 ..      11      73 ..       9      83 .. 0.82

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 4.9e-14
    TIGR02381  3 iGiv.kWfnnakGfGfisaegkd....eDifahystiqm...DGYrtLkaGqkvqfevvqgekG 58
                 +G+v kW  n +G Gfi+++g++    +D   hys+i++   DG+++L  G kv+fe ++++k 
  MMETSP1061-20121228|13549_1 11 TGVVaKWL-NHRGIGFITPDGQEaevgKDFLVHYSNIKQepaDGFKSLAEGTKVEFETTEDPKN 73
                 67763776.579*********8733335889******976669***************999985 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.2e-07   9.6e-05     163     252 ..      99     180 ..      61     190 .] 0.58

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.2e-07
    TIGR01628 163 kfikksere.atkekkftNlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgki 252
                  +f++k ++e   +    t l++  l ++ +   l++ F + G++  a v k   n +     + y k+edA +A+e ln+ +++    gk 
  MMETSP1061-20121228|13549_1  99 NFQSKDKKEdEEPFVPGTQLFIGGLAEECNWRDLKDHFKQCGDVKRADVFKKGGNGT-----IRYFKKEDADSAIELLNNSEFQ----GKT 180
                  344444443222223336666666666666666666666666666666665555544.....6666666666666666666665....333 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     4e-07   0.00033     311     373 ..     127     188 ..      89     190 .] 0.84

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 4e-07
    TIGR01649 311 vtpdalFnlfgvYGdvervkilknkketalvemadpqqaqlalthLdkvklfgkklrvavSkq 373
                   +   l   f + Gdv+r  ++ +k +++ + + ++++a+ a++ L+++++ gk+++v v k+
  MMETSP1061-20121228|13549_1 127 CNWRDLKDHFKQCGDVKRADVF-KKGGNGTIRYFKKEDADSAIELLNNSEFQGKTIEVRVDKK 188
                  4566666778999******986.589********************************99987 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.1e-07   0.00042     206     295 ..     102     185 ..      90     190 .] 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 5.1e-07
    TIGR01622 206 atelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                  +++++ d    ++ ++L++G+l  +    +L++ F+  G+++  ++ k   +    G G i++ + e a  A+e lN  e  G++i v  
  MMETSP1061-20121228|13549_1 102 SKDKKEDEEPFVPGTQLFIGGLAEECNWRDLKDHFKQCGDVKRADVFKK--G----GNGTIRYFKKEDADSAIELLNNSEFQGKTIEVRV 185
                  33444444448999***************************99888763..3....789***************************9965 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   3.5e-06    0.0029      46      78 ..     152     184 ..     116     189 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 3.5e-06
    TIGR01661  46 GyGfvnyvreedaekavnslnGlrlqnktikvs 78 
                  G G + y ++eda+ a++ ln   +q kti v 
  MMETSP1061-20121228|13549_1 152 GNGTIRYFKKEDADSAIELLNNSEFQGKTIEVR 184
                  778889999999999999999999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1194.19
//
Query:       MMETSP1061-20121228|13576_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 402.91
//
Query:       MMETSP1061-20121228|13605_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      193  (0.0470502); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|13617_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1396.04
//
Query:       MMETSP1061-20121228|13626_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 975.25
//
Query:       MMETSP1061-20121228|13692_1  [L=933]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-42  142.4   0.0    1.3e-38  130.6   0.0    2.4  2  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
    2.9e-30  103.6   0.0    1.3e-27   94.8   0.0    2.2  2  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B


Domain annotation for each model (and alignments):
>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.6   0.0   6.1e-42   1.3e-38      50     225 ..     236     433 ..     227     477 .. 0.90
   2 !    9.2   0.0   6.7e-05      0.14     238     264 .]     593     619 ..     574     619 .. 0.88

  Alignments for each domain:
  == domain 1    score: 130.6 bits;  conditional E-value: 6.1e-42
    TIGR00446  50 lGlyllqeassmlPvlalepeekervlDlaaaPGgkttqisallk.........neGaivanevsksRvkvLianinRlGvlnvavinvDgRkfgavvlk.............fDriLlDaPCsgeGvirkdksrkknrseedikeisklqkeLllaaidalkkgGvlvYstCsleveeneevvdyllrkrkdvvevl 225
                  +G++  qea sm+P+++l+p+++++vlD+aaaPG+kt q+ ++++          +G++van+ + +R  +L    +R+    + ++  D+R f+ +++              fDr+L D PC+g+G  rk++   k+++  + + +  lq  + l + ++ k gG l YstCs++++ene+vv  llr  +++ e +
  MMETSP1061-20121228|13692_1 236 AGFVTRQEAVSMIPPVVLDPKPHHVVLDMAAAPGSKTSQLLEIVNlptdeechePKGCVVANDSDVKRAYMLTHQTRRINSPAIFITSCDARFFPLLRNSkddvknddspegiFDRVLCDVPCTGDGTARKNPGIWKSWTALNGYALHPLQLAIALRGAQSTKVGGYLCYSTCSMNPIENEAVVAELLRSSEGALELV 433
                  79999**********************************98776433322222269***************************************998877888899**********************************************************************************999988774 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 6.7e-05
    TIGR00446 238 keevkkalrvyPqsedveGFFvaklrk 264
                  k + ++++r+ Pq  ++ GFFva l+k
  MMETSP1061-20121228|13692_1 593 KFHLERCMRILPQDMNTGGFFVALLKK 619
                  456789*****************9998 PP

>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.8   0.0   6.2e-31   1.3e-27     222     405 ..     234     438 ..     213     457 .. 0.82
   2 !    6.4   0.0   0.00044       0.9     403     435 ..     587     619 ..     573     621 .. 0.91

  Alignments for each domain:
  == domain 1    score: 94.8 bits;  conditional E-value: 6.2e-31
    TIGR00563 222 feeGwvtvqDasaqlvatlLePkneetilDvCaaPGGktthilelak...d......qaqvvalDleehrlkrvkenleRLgltiikveekdad......kageke.....evekfDRiLlDaPCsalGvirRkPDlkwlrkeadiaeLvelqkeiLkaiaplvkkgGtLvYstCtllpeeneeqikaFlaeled.lplekrlpe 405
                   e G+vt q+a +++   +L+Pk+   +lD+ aaPG kt+ +le+++   d      ++ vva D + +r   ++++  R++  +i + + da+      +++ +      + + fDR+L D+PC + G+ r++P +    +  +   L +lq +i    a+  k gG L YstC+++p ene+++   l   e  l+l  r pe
  MMETSP1061-20121228|13692_1 234 TEAGFVTRQEAVSMIPPVVLDPKPHHVVLDMAAAPGSKTSQLLEIVNlptDeechepKGCVVANDSDVKRAYMLTHQTRRINSPAIFITSCDARffpllrNSKDDVknddsPEGIFDRVLCDVPCTGDGTARKNPGIWKSWTALNGYALHPLQLAIALRGAQSTKVGGYLCYSTCSMNPIENEAVVAELLRSSEGaLELVDRKPE 438
                  478****************************************99743331223333899************************9999877765332221333333334444459**********************8888999999***************************************9997776654577677766 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.00044
    TIGR00563 403 lpekvsesvssgglqilPhaeegDGFfiaklkk 435
                  +pe+ s++  +  ++ilP+  ++ GFf+a lkk
  MMETSP1061-20121228|13692_1 587 TPEEISKFHLERCMRILPQDMNTGGFFVALLKK 619
                  5889999999999*****************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.13s 00:00:00.62 Elapsed: 00:00:00.35
# Mc/sec: 3518.45
//
Query:       MMETSP1061-20121228|13705_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|13739_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|13761_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   26.0   1.8      0.061   11.0   0.0    3.1  3  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0002      0.84      16      26 .]       2      12 ..       1      12 [. 0.91
   2 !   11.0   0.0   1.5e-05     0.061       1      25 [.      13      36 ..      13      37 .. 0.83
   3 !    6.4   0.1   0.00039       1.6       1      19 [.      38      55 .]      38      55 .] 0.96

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0002
    TIGR02167 16 fdTsnVTnMss 26
                 +d+s+V +M s
  MMETSP1061-20121228|13761_1  2 WDVSQVHDMES 12
                 *********75 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 1.5e-05
    TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMs 25
                 MF    ++++ ++  +d+s+V++ s
  MMETSP1061-20121228|13761_1 13 MFHRAHAFNQ-PINEWDVSKVNDTS 36
                 7777777788.8999*******976 PP

  == domain 3    score: 6.4 bits;  conditional E-value: 0.00039
    TIGR02167  1 MFsgCssLtsLDlSnfdTs 19
                 MF + s++++ ++  +d+s
  MMETSP1061-20121228|13761_1 38 MFTDASAFNQ-PINEWDVS 55
                 9*********.******98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|13808_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.24    8.6   4.2       0.49    7.5   0.1    2.0  2  TIGR03953 rplD_bact: 50S ribosomal protein L4


Domain annotation for each model (and alignments):
>> TIGR03953  rplD_bact: 50S ribosomal protein L4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.5     0.004        16      28      50 ..       2      24 ..       1      26 [. 0.93
   2 ?    7.5   0.1   0.00012      0.49      28      50 ..      33      55 ..      28      56 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.004
    TIGR03953 28 rrqgtaktktrseVsgggkKpyr 50
                 +rq t+ +k+ s    + kK ++
  MMETSP1061-20121228|13808_1  2 SRQDTKTSKSTSSADNTSKKWWN 24
                 599*****************996 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.00012
    TIGR03953 28 rrqgtaktktrseVsgggkKpyr 50
                 +rq t+ +k+ s V  + kK ++
  MMETSP1061-20121228|13808_1 33 SRQDTRTSKSTSSVDNTSKKWWN 55
                 79*******************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|13833_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|13823_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.34
# Mc/sec: 873.46
//
Query:       MMETSP1061-20121228|13852_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.33
# Mc/sec: 211.98
//
Query:       MMETSP1061-20121228|13839_1  [L=1182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00067   15.3  59.5     0.0013   14.4  41.2    1.4  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.037    9.5  60.1      0.053    9.0  41.7    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4  41.2   6.1e-07    0.0013     673     964 ..     850    1143 ..     807    1177 .. 0.50

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6.1e-07
    TIGR02168  673 silerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelka....lrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleek 964 
                   +  +r+k+++++ +  +++ ++ia++e+ +k+ ++ +++ ee+ +k+r+++e + +k +++++  e++e+e++ ++e+++++e+e++e e+e + l++e e a++  k +++++++ ++ei+  ++el++    ++++++ele++ +  +++ +e+ e++++ e+++a++ +  ++ ++++++ +e i+ l++e ++l+++ ++l+++ + + ++ ++l ea a + ++ e+++e+ ++  +++++l ++l++ ++++ +l++++ +++      +++++ +y+ ++ e++e+ ++
  MMETSP1061-20121228|13839_1  850 GDSKRRKAVAKIHKWYKNVVQQIADAERSAKASAE-QKAKEERERKAREKAEAKAKKAADERMAKESAEREARLAREKAEEEERERKEREKELKRLKAEEEAASKFEKDKDKKVKKFKKEIKSKEKELDEkgesWNAEINELERNCEVAESARDEALEEIAKAEAKLASIPTLSDKDQKKLSDSSEIISYLRKENKKLRKSTTQLRKDYDTMVENNKRLLEANAYAGASFEAMNEQSKKKTSNNSKLLQNLDQYKKQNMKLKEDM-RMRSAYYDAEAKIRTNYQKSMAEIMEMIQD 1143
                   33444444444444444444444444444333332.3333334444444444444444444444444444444444444444444444444444444444444433344444444444444444433332000022223333333333333333333445555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555554.344445555566666666666666666553 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0  41.7   2.6e-05     0.053     693     970 ..     853    1139 ..     825    1149 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 2.6e-05
    TIGR02169  693 slqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaels.eeki.....eeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeel....slekvkkelekveeelea 970 
                   + ++ +++i+k  +++ +++ dae++ ++ ++e+++ ee+e+k++e++e++++k      ++e +++e    +++ ee e++ ++ +++l+ l+ae++  +k+     +++++ +++++ + ++++++ e+ +ae+n+le + e++e++++e+ eei+++e++ ++i    +++++kl + +e +  l+++ ++L+++  +L+k+ + + ++ ++l +++  + a+ e  +++ k+++ + ++l ++l++++++  + +e+            k++ + +k  +e+++
  MMETSP1061-20121228|13839_1  853 KRRKAVAKIHKWYKNVVQQIADAERSAKA-SAEQKAKEERERKAREKAEAKAKKAADERMAKESAEREARLAREKAEEEERERKEREKELKRLKAEEEaASKFekdkdKKVKKFKKEIKSKEKELDEKGESWNAEINELERNCEVAESARDEALEEIAKAEAKLASIPTLSDKDQKKLSDSSEIISYLRKENKKLRKSTTQLRKDYDTMVENNKRLLEANAYAGASFEAMNEQSKKKTSNNSKLLQNLDQYKKQNMKLKEDMRMRSayydAEAKIRTNYQKSMAEIME 1139
                   44555666777777777777777776554.344445555666666666666666555555555555555555555556666666666666666654331333310000344444455555555566666778999********************************************************************************************************************9976444443333220000344666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       595  (0.145051); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.88u 0.18s 00:00:01.06 Elapsed: 00:00:00.66
# Mc/sec: 2363.80
//
Query:       MMETSP1061-20121228|13875_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 326.83
//
Query:       MMETSP1061-20121228|13870_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-09   33.3   1.3    3.6e-08   30.8   0.6    2.0  2  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    1.5e-08   31.8   2.4    1.9e-08   31.4   0.8    1.8  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    1.5e-05   22.6   0.3    5.5e-05   20.7   0.1    1.8  2  TIGR01777 yfcH: TIGR01777 family protein
      2e-05   22.2   0.5    3.1e-05   21.6   0.4    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    3.9e-05   21.3   0.3    6.6e-05   20.5   0.2    1.4  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    6.9e-05   20.1   0.3    0.00011   19.5   0.2    1.4  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
     0.0001   19.1   1.3    0.00017   18.4   0.9    1.3  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
     0.0023   14.8   0.5     0.0031   14.4   0.3    1.2  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
     0.0049   14.1   0.6     0.0076   13.5   0.4    1.4  1  TIGR02415 23BDH: acetoin reductases
     0.0052   14.1   0.6      0.027   11.8   0.2    2.0  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
  ------ inclusion threshold ------
      0.012   12.6   0.1      0.025   11.5   0.1    1.5  2  TIGR02685 pter_reduc_Leis: pteridine reductase


Domain annotation for each model (and alignments):
>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.6   9.7e-11   3.6e-08       7      87 ..      63     141 ..      58     153 .. 0.90
   2 ?    0.8   0.0      0.14        52     182     220 ..     212     251 ..     197     264 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 9.7e-11
    TIGR03325   7 vvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipna 87 
                   v+v+gg+ g+g a++++  a g+ v  l +s++ + el+++ g  v ++ gd+   +d ++a++ c +a+  l   +++ 
  MMETSP1061-20121228|13870_1  63 KVFVAGGSRGVGHAIIEKLSARGTEVVALVRSEESVAELNSMSG--VTAILGDAFHQKDVENAMDGCDAAITTLGGTVGDR 141
                  689**************************************988..8899*****************99998888777765 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.14
    TIGR03325 182 vapggls.tdlrglksldladksissvplgdllksvlpig 220
                  + pggl    + g + l  + k+i s+  +d+ + v+   
  MMETSP1061-20121228|13870_1 212 IRPGGLVsEPMTGKAVLTEDTKAIGSIHREDVADLVIKAM 251
                  78***9945689999999999******9999888776654 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.4   0.8   5.2e-11   1.9e-08       2     116 ..      63     171 ..      62     184 .. 0.84
   2 ?   -3.9   0.0       2.7     1e+03     204     225 ..     238     258 ..     229     267 .. 0.61

  Alignments for each domain:
  == domain 1    score: 31.4 bits;  conditional E-value: 5.2e-11
    TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeld.vEiveGdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvytssvat 116
                  kv+v G++  vG a++++l ++G+ev +lvr++ + ++l++++ v  + Gd   ++ +++a+ Gc+a +     + l  +  +   + ++eg ++v+e A   gv+r++   s+++
  MMETSP1061-20121228|13870_1  63 KVFVAGGSRGVGHAIIEKLSARGTEVVALVRSEESVAELNSMSgVTAILGDAFHQKDVENAMDGCDAAI-----TTLGGTVGD--RRVDYEGNNNVIESAGILGVQRILLVTSIGC 171
                  89*************************************9996378899****************9655.....444333333..3567888899999999999999988888765 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2.7
    TIGR03466 204 vdvddvaegHllAlerGriGer 225
                  ++ +dva+  ++A++  ++ er
  MMETSP1061-20121228|13870_1 238 IHREDVADLVIKAMDSAKT-ER 258
                  5556666666666655443.34 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.1   1.5e-07   5.5e-05       2      85 ..      65     154 ..      64     163 .. 0.83
   2 ?   -0.7   0.0       0.5   1.9e+02     197     220 ..     237     260 ..     228     276 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.5e-07
    TIGR01777   2 litGgtGliGralveelekkghevviltrskekekeekkesakevaee......aeeealegvdavinLaGepiadkrwteerkkeileS 85 
                   ++Gg+  +G+a++e+l+++g evv+l+rs+e+ +e  ++s  +++        + e+a++g+da i   G ++ d+r   e  ++++eS
  MMETSP1061-20121228|13870_1  65 FVAGGSRGVGHAIIEKLSARGTEVVALVRSEESVAELNSMSGVTAILGdafhqkDVENAMDGCDAAITTLGGTVGDRRVDYEGNNNVIES 154
                  678888889***********************888887666655443356655455669******************9999988888887 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.5
    TIGR01777 197 WihleDlvklilfaleneevsGvv 220
                   ih eD+++l+  a+++++++ vv
  MMETSP1061-20121228|13870_1 237 SIHREDVADLVIKAMDSAKTERVV 260
                  599*******99999998876543 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.4   8.3e-08   3.1e-05       3      78 ..      64     140 ..      62     159 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 8.3e-08
    TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvapneerakewlqekeveg.fdvavvkadvss.feeakaavakveaelGp 78 
                   +v+Gg++G+G ai ++l + G +vva v+++e+ a+  +  ++v+     a+ ++dv + ++ + aa++ +   +G+
  MMETSP1061-20121228|13870_1  64 VFVAGGSRGVGHAIIEKLSARGTEVVALVRSEESVAEL-NSMSGVTAiLGDAFHQKDVENaMDGCDAAITTLGGTVGD 140
                  589***************************87776654.333333320344567788865268899999988888874 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2   1.8e-07   6.6e-05       1      69 [.      64     126 ..      64     157 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.8e-07
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagvkaaavkldvsdeeevkelvee 69 
                  ++v G+srg+G+ai +kl ++g++vv   r +ee+++el+    ++   ++a+  d  ++++v+++++ 
  MMETSP1061-20121228|13870_1  64 VFVAGGSRGVGHAIIEKLSARGTEVVALVR-SEESVAELN----SM-SGVTAILGDAFHQKDVENAMDG 126
                  689***********************9955.445444443....32.2234455566666666666554 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.2   2.9e-07   0.00011       1      48 [.      64     112 ..      64     159 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 2.9e-07
    TIGR01831   1 vlvtgasrgigraialklaadgfeiavhyrsdradae.esvaairaqgg 48 
                  v+v+g srg+g+ai  kl+a g e+   +rs+++ ae +s++ ++a  g
  MMETSP1061-20121228|13870_1  64 VFVAGGSRGVGHAIIEKLSARGTEVVALVRSEESVAElNSMSGVTAILG 112
                  789****************************999998445666666544 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.9   4.4e-07   0.00017     132     231 ..      47     145 ..      43     164 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.4e-07
    TIGR02823 132 LsvealekagltpeegevlVtGAtGgVgslavalLsklGyevvavtgkkeeeeylkel.GakevisreeleeekkkplekerwagavDtvGgkvlanvlkq 231
                  Ls+   +++  t + ++v V G + gVg   ++ Ls++G evva +  +e+ + l+++ G+++++  +  +++ + ++  +  ++a+ t+Gg+v ++ +  
  MMETSP1061-20121228|13870_1  47 LSMSSESESSSTSKYKKVFVAGGSRGVGHAIIEKLSARGTEVVALVRSEESVAELNSMsGVTAILGDAFHQKDVENAM--DGCDAAITTLGGTVGDRRVDY 145
                  5666666777889999*****************************999999999988858888888776666555555..457889999999876665555 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3   8.3e-06    0.0031     138     223 ..      59     141 ..      35     163 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 8.3e-06
    TIGR02824 138 kagetvLihggasGiGttaiqlakalgakvlvtagsdekleaaekLGadvainyreedFvevvkeetegkGvdvilDivggsylek 223
                  ++ ++v + gg+ G+G + i   +a g++v++ ++s+e ++  +++   +ai      F +    e++  G d  + ++gg   ++
  MMETSP1061-20121228|13870_1  59 SKYKKVFVAGGSRGVGHAIIEKLSARGTEVVALVRSEESVAELNSMSGVTAILGD--AFHQKDV-ENAMDGCDAAITTLGGTVGDR 141
                  556899***********************************99999877777533..3443333.334457777777777766555 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.4     2e-05    0.0076       3      69 ..      64     125 ..      62     167 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2e-05
    TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkekgtkavavkldvsdkseveeave 69 
                   +v+G+++G+G+ai e+L + G +v+     ee+++e  +    +g  a  +  d  ++++ve+a++
  MMETSP1061-20121228|13870_1  64 VFVAGGSRGVGHAIIEKLSARGTEVVALVRSEESVAELNS---MSGVTA--ILGDAFHQKDVENAMD 125
                  679*********************9876555555443322...223333..3344444444444443 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.2   7.2e-05     0.027       6      49 ..      62     103 ..      58     134 .. 0.73
   2 ?    0.6   0.0      0.18        69      98     153 ..     114     169 ..     111     180 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.2e-05
    TIGR01832   6 kvalvtGantGlGqgiavglaeaGadivgvgiselsetqekvea 49 
                  k+++v+G ++G+G +i+  l++ G+++v+  +se s   +++++
  MMETSP1061-20121228|13870_1  62 KKVFVAGGSRGVGHAIIEKLSARGTEVVALVRSEES--VAELNS 103
                  8899************************99887643..334433 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.18
    TIGR01832  98 efsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsy 153
                  +f +kd ++ ++    a+  l  +v+ + ++   + ++i+ a +l  q  + v+s 
  MMETSP1061-20121228|13870_1 114 AFHQKDVENAMDGCDAAITTLGGTVGDRRVDYEGNNNVIESAGILGVQRILLVTSI 169
                  5889999999999999999999999999999888999**********999999886 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   6.7e-05     0.025       5      75 ..      65     131 ..      62     149 .. 0.77
   2 ?   -3.4   0.0       2.3   8.5e+02     150     186 ..     206     241 ..     189     252 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.7e-05
    TIGR02685   5 lvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadl.snsasllssceeii 75 
                   v+G+++ +G++i +kl ++G  vv    rs+e+    +aeln+    +a++  a     ++  ++ c++ i
  MMETSP1061-20121228|13870_1  65 FVAGGSRGVGHAIIEKLSARGTEVVALV-RSEES----VAELNSMSGVTAILGDAFHqKDVENAMDGCDAAI 131
                  699******************9998655.55554....6788988888888877643134556666666655 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 2.3
    TIGR02685 150 ssnlsivnlvdamtdqpllgfslytmakealeGltrs 186
                  +sn+si+     +++ p+ g ++ t   +a++ + r 
  MMETSP1061-20121228|13870_1 206 NSNWSIIRP-GGLVSEPMTGKAVLTEDTKAIGSIHRE 241
                  556666653.456777777777777777777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 1494.12
//
Query:       MMETSP1061-20121228|13877_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|13885_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-32  107.8   0.0    1.1e-31  107.2   0.0    1.3  1  TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
    5.7e-06   22.9   0.0    7.5e-06   22.5   0.0    1.1  1  TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase


Domain annotation for each model (and alignments):
>> TIGR00530  AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   5.3e-35   1.1e-31      16     129 ..     197     312 ..     186     313 .. 0.93

  Alignments for each domain:
  == domain 1    score: 107.2 bits;  conditional E-value: 5.3e-35
    TIGR00530  16 kavlvvanHqsnlDiltlsaafa.pplvfiAKkeLkeipflgilllltgavfidRen.kraiasllkaakkllkegravgvFpeGtrskgrkilefKkGalkiAikakvpilPvvl 129
                   +++ vanH s++Di +l+a+++ ++  ++ KkeL  +p+lg +l+  g +++dR + + ai++l++  + l+k+g  ++ FpeGtrs+++++  fK+Ga+k+A ka++p+ P+++
  MMETSP1061-20121228|13885_1 197 PKAMFVANHCSWMDIPFLGAVMGwRNYKIVSKKELGIVPILGTALRSGGHIMVDRADrRSAIKTLKQGIQYLKKDGLTLATFPEGTRSRSGRMMDFKAGAFKMAHKAGAPVFPISI 312
                  46899******************9*********************************66689999999999******************************************997 PP

>> TIGR03703  plsB: glycerol-3-phosphate O-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   3.7e-09   7.5e-06     296     401 ..     201     302 ..     184     309 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 3.7e-09
    TIGR03703 296 YvPcHRSHmDYLLLsYvlykeGlvpPhiaAGiNLnl.fpvGpilRrgGAFFirRsfkgnkLYsavfrEYlaelfakgysveyfvEGgRSRtGRllepktGmlamTlq 401
                  +v  H S mD   L  v+   G    +i+    L + ++ G+ lR gG   + R+ +   + +  ++  ++ l + g ++  f EG RSR+GR+++ k+G + m  +
  MMETSP1061-20121228|13885_1 201 FVANHCSWMDIPFLGAVM---GWRNYKIVSKKELGIvPILGTALRSGGHIMVDRADRRSAIKT--LKQGIQYLKKDGLTLATFPEGTRSRSGRMMDFKAGAFKMAHK 302
                  555566666655555555...4444556666666651567**************988877754..899**********************************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1883.38
//
Query:       MMETSP1061-20121228|13911_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 425.30
//
Query:       MMETSP1061-20121228|13898_1  [L=442]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    4.6   7.4        2.3    4.2   5.2    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   5.2   0.00056       2.3     219     318 ..      26     133 ..       3     257 .. 0.45

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.00056
    TIGR00934 219 adesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdees.sesrriqekikrrlstssiekns........q 318
                   +++      de+++++++     e+f++++ +++ + + +++s++ + +++ a ++ +  +  ans++++s+ +  + +rr +    +r s +s+ k +         
  MMETSP1061-20121228|13898_1  26 MHDNTD-GGNDENHNHNEEDTEDDEEFQSHSYQQETTEAAMESSSAVHTSQNAAISNPNPTSYTANSTNKTSRTSDiARARREKRLAMNRQSARSRRKRKkvlleslnA 133
                  222222.334444555555555555555555555555555555555555333333322222333333333222221111111111111111111111111222333330 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (442 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1881.91
//
Query:       MMETSP1061-20121228|13923_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 447.62
//
Query:       MMETSP1061-20121228|13931_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1946.84
//
Query:       MMETSP1061-20121228|13941_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00075   16.7   0.3    0.00075   16.7   0.2    1.5  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1      0.11   4.5e+02      29      40 ..      55      66 ..      50      79 .. 0.64
   2 !   16.7   0.2   1.8e-07   0.00075      43      69 ..      87     113 ..      81     121 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.11
    TIGR00599 29 ChvCkdffkaPv 40
                 C +C++ ++ P 
  MMETSP1061-20121228|13941_1 55 CAICRNSLNEPS 66
                 445544444443 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 1.8e-07
    TIGR00599  43 sCsHtFCslCiRrcLseepkCPlCrae 69 
                   C+H F   Ci r+L++ + CPlC  e
  MMETSP1061-20121228|13941_1  87 NCGHVFHLDCIQRWLKTRSVCPLCNKE 113
                  7***********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 903.08
//
Query:       MMETSP1061-20121228|13967_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 488.36
//
Query:       MMETSP1061-20121228|13962_1  [L=781]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-10   38.7   1.4    7.8e-08   29.1   0.1    2.2  2  TIGR02289 M3_not_pepF: oligoendopeptidase, M3 family
    3.7e-05   20.6   1.6      0.075    9.7   0.0    2.9  2  TIGR00181 pepF: oligoendopeptidase F


Domain annotation for each model (and alignments):
>> TIGR02289  M3_not_pepF: oligoendopeptidase, M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   3.8e-11   7.8e-08      59     241 ..     212     397 ..     206     439 .. 0.76
   2 !    8.3   0.0   7.7e-05      0.16     334     385 ..     550     603 ..     547     614 .. 0.78

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 3.8e-11
    TIGR02289  59 eeeefqdeikpllkryetklskklveskfreeleervyellfklikvklklfseknielli...kenklstkYekiianikidfeGeektlsqlkpyLqdsdRstRkkAkealseflaeveeeldr..iydeLvkvRtkiAknlgfeNyvdlayklleRtdYsaedvakyresvlkyvvPlltklrkr 241
                  +e+e ++eik +l ++ +k+s+++++   +     +    l  + + +  ++ +  ++++    ke +   k +   a     ++      s + ++ + +dR +R+k ++a+++  +e+ ee ++  ++ e+  +++++A+ lgf Ny +l  +++     + e+v  + + + ++ vP ++k  ++
  MMETSP1061-20121228|13962_1 212 AEKERFNEIKLKLATLSNKFSNNVLDDTKNFSYTIEDPAVLEGVPESAKAMWANSHVQYMKsqaKEGEEQPKVDMSAATEAGPWRITLDIPSYIPVMSHLPDRGIREKVYKAYVQKASEKSEEKNNvpLIYEILSLKQEMAELLGFANYAELSLAKKMA--STVEEVTALSNLIADKAVPAAKKELEE 397
                  6788899999999999999999999886666666666778888888888888888888765111444444555555556666777777777777777788*****************99999999844478999******************9888766..799****************99876544 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 7.7e-05
    TIGR02289 334 tsgdidvliHEvGHafqvyeslk..qllpeyrwltaeaaElaSmslEllsleyl 385
                  t++++++l+HE GH +q   +      +   + ++ +a El S  +E   ++  
  MMETSP1061-20121228|13962_1 550 TFQEVETLFHETGHGLQHMLTEAqvGDVAGINGIEWDAVELPSQFMENWCYDRP 603
                  7899************98544432356777888999999999999997777765 PP

>> TIGR00181  pepF: oligoendopeptidase F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.7   0.0   3.7e-05     0.075     189     299 ..     299     424 ..     280     441 .. 0.66
   2 !    8.6   0.2   7.8e-05      0.16     374     526 ..     550     718 ..     547     761 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 3.7e-05
    TIGR00181 189 lknstyekvleknkdreiRkkayesfykaykks...kntlaallaaevkknkalaklrnyesvieaslfsde...vdk.evydnll.dt.vkknakvlqrYlklrkkvlk.......ldklepyDlk 299
                  l+  +y  v+++ +dr iR+k y++++++ +++   kn +  l+++ ++ ++++a+l +++++ e sl+++    v++   + nl+ d+ v + +k l++ ++l +k  +       l+klep+D++
  MMETSP1061-20121228|13962_1 299 LDIPSYIPVMSHLPDRGIREKVYKAYVQKASEKseeKNNVP-LIYEILSLKQEMAELLGFANYAELSLAKKMastVEEvTALSNLIaDKaVPAAKKELEEVTALARKEGGdeysvdnLEKLEPWDVT 424
                  5666788889999************9987765411145544.455677788899***********99988641113321223333313213333556666666666655567777777777777775 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 7.8e-05
    TIGR00181 374 tlndvftLvHElGHsvhslfsskeqpys..lseysiflaEvaStfNelllad........yllkkskndkemkl.yileealsnfvatfvrqtlfaefekevyelie..egepltaekLteiyanllkkyfgdavkidee...seltwlripHfYagfYvYkYaiglva 526
                  t ++v tL HE GH ++ ++++ +   +   +  +   +E +S f e    d           ++ +  +e k+  + ++++ n   ++ rq+ f++ + ++++  +  +ge+ + + + ++ +++++ y  +++ ++e+    +   +    + ag+Y+Yk+a  ++a
  MMETSP1061-20121228|13962_1 550 TFQEVETLFHETGHGLQHMLTEAQVGDVagINGIEWDAVELPSQFMENWCYDrptvfgfaKHWETGEPLPEDKFeKLCAQKIFNSGMQTCRQLYFGQLDLNLHSNFDatAGEKEEGKGIFDLQREIASIYTPHSMPLEEDrflCSFSHIFAGGYAAGYYSYKWAEVMSA 718
                  56789***************98765443114555666788888888876544222211111112222223333313456778888888888888888888887765411577778888888888888888888888887755555555555666666888888766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (781 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 3123.74
//
Query:       MMETSP1061-20121228|13986_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1061-20121228|14005_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 647.95
//
Query:       MMETSP1061-20121228|14008_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-61  207.4  19.5    1.7e-61  206.7  13.5    1.3  1  TIGR00937 2A51: chromate transporter, chromate ion transporter (CHR) family


Domain annotation for each model (and alignments):
>> TIGR00937  2A51: chromate transporter, chromate ion transporter (CHR) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.7  13.5   4.1e-65   1.7e-61       1     368 []      44     443 ..      44     443 .. 0.83

  Alignments for each domain:
  == domain 1    score: 206.7 bits;  conditional E-value: 4.1e-65
    TIGR00937   1 fLkLGllsfGGPvAllgylreelVeerkWlseksykdlvalaqllPGpaasqvaiylGyllkgilGailaglafvLPsfllllalailyvrveslgavgavleglkaavvaliaqavlkltkklvk..ldrllvvialvtavl...tilkeseviqlllailvlvllvrlkr............................adalkvklsqkklvallalalaalallllladlsllsvlaiflk...kagalvfGggyvvvpfleaevVekyelltakqfldgialaqitPgPlvitatfiGylvagllGaivatvaiFlPafllvllvlplfkklkknkiikafldgvnaavvGllvaavidlartsavdiptllvavvlllallkfkklsellvvllaaliG 368
                  f  LG ++fGGP+A+++ lr +lV  +  ++e  +++l al q lPGp+++q+ i    +++g++ ++la + + LP+f +l + ++++  + + ++   +l g++ a+++li +a +k+ +kl k  +++  v  a+++++     i  +s+ ++ +++++++++l +l+                                 k  ls  +  ++l l+l +l+  +l++++    +++++++   ++g l+fGgg vv+p+l+ e+V ++ ++t++qf++g+++aq +PgP++ +a+f+G++ ag++G++ a+v++F P+ +l+  +lp+++++++   +ka+l+g+na++vGl+v+  + l  +s+++ +  +v++++  ++     +++++v+  + + G
  MMETSP1061-20121228|14008_1  44 FWYLGFIAFGGPTAHVAILRDHLVSVNNFIDEDVFTELFALGQGLPGPSSTQLVISTASTHGGAISGVLALIFWCLPGFTVLTLSGMFLYSFIDPSSPPIWLLGIGPAAMSLIFKASFKFVQKLDKfgTGIGMVACAVAVMISgdeHIPSNSSQVVYPILLVSGAILCLLDFlmgpdrsigtyyrsagestepsdkdrmlV--EKIGLSIFQGFGYLFLWLGLLIGSVLVVNMGNSNLFVDIFElyfRIGSLIFGGGIVVLPMLQSELVPRG-WITNEQFFQGLGIAQSMPGPMFNFAAFLGAVTAGFPGSVTAAVGLFGPGVILIFAMLPFWSRFRHLAWFKAVLKGLNASAVGLIVSGCVTLYPKSVHTYADTMVFILAGGLATIY-SFQAPFVIFWGCVFG 443
                  5679*************************************************************************************99999999999***********************9873333444433333333222245566666655555555555555544556899***************99876333..44456666667777777776666666555555555555544445************************8.************************************************************************************************9999999998865444433.367788887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1738.49
//
Query:       MMETSP1061-20121228|14021_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.26
# Mc/sec: 2624.55
//
Query:       MMETSP1061-20121228|14031_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1564.07
//
Query:       MMETSP1061-20121228|14084_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   39.0   0.0    1.8e-10   38.9   0.0    1.1  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.9   0.0   4.5e-14   1.8e-10     143     216 ..      37     112 ..       6     115 .] 0.88

  Alignments for each domain:
  == domain 1    score: 38.9 bits;  conditional E-value: 4.5e-14
    TIGR02933 143 erieallrrlrakr..eafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLfqlaegeLsavieselGwhlLl 216
                    ++   r++r++     fa+ a   s+C +  + G LG  +rG +    ++a f l+++e+s ++ ++ G+hl++
  MMETSP1061-20121228|14084_1  37 AELQEYERKIRGDGivLVFARYAAARSDCGSFRNHGDLGFFGRGAMQEPFENAAFALQKDEMSGIVSTDSGYHLIY 112
                  556677888888752257********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 798.88
//
Query:       MMETSP1061-20121228|14081_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       415  (0.10117); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 2027.83
//
Query:       MMETSP1061-20121228|14082_1  [L=937]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.3e-211  699.9   0.6   4.9e-210  697.4   0.0    1.9  2  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
   1.3e-146  486.2   0.1    3.6e-75  251.2   0.0    2.2  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
   2.8e-132  439.8   0.2      2e-70  235.8   0.0    2.1  2  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
   8.5e-110  365.7   2.4    1.4e-62  209.9   0.0    3.5  4  TIGR03689 pup_AAA: proteasome ATPase
    2.8e-16   57.0   0.0    1.2e-07   28.5   0.0    2.2  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
      3e-16   57.2   0.0    3.2e-08   30.8   0.0    2.6  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    1.4e-08   32.4   0.1     0.0028   15.0   0.0    2.6  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
      2e-08   31.5   0.0     0.0019   15.1   0.0    2.4  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    3.2e-08   30.6   0.2      0.031   10.9   0.0    3.3  3  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    9.9e-06   23.2   1.2      0.015   12.7   0.0    2.8  3  TIGR01351 adk: adenylate kinases
    1.1e-05   22.9   0.0      0.012   13.0   0.0    2.6  2  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    1.9e-05   21.2   0.0      0.052    9.9   0.0    2.5  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
    2.3e-05   20.9   0.2     0.0042   13.4   0.0    2.3  2  TIGR00763 lon: ATP-dependent protease La
      4e-05   21.1   0.2       0.14    9.6   0.0    2.7  3  TIGR00678 holB: DNA polymerase III, delta' subunit
    4.8e-05   21.0   0.1      0.096   10.3   0.0    2.6  2  TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
    6.7e-05   19.9   0.0      0.052   10.4   0.0    2.6  3  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
    9.1e-05   18.7   0.5       0.15    8.0   0.0    4.0  4  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
    0.00012   18.9   2.4       0.57    6.8   0.0    4.3  5  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    0.00024   17.6   0.0       0.12    8.6   0.0    2.2  2  TIGR00602 rad24: checkpoint protein rad24
    0.00027   18.8   0.1      0.091   10.6   0.0    2.5  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase
    0.00029   17.8   0.1     0.0025   14.7   0.0    2.3  2  TIGR02881 spore_V_K: stage V sporulation protein K
    0.00042   16.9   0.2       0.17    8.2   0.1    2.3  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
    0.00051   16.5   0.5       0.18    8.2   0.0    2.3  2  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0049   13.8   0.0        2.3    5.0   0.0    3.2  3  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
  ------ inclusion threshold ------
      0.016   12.2   0.1        1.3    6.0   0.0    2.4  2  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
      0.028   11.5   0.0       0.28    8.2   0.0    2.1  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
      0.046   11.0   1.0        1.7    5.9   0.0    3.0  3  TIGR03877 thermo_KaiC_1: KaiC domain protein, Ph0284 family
      0.054   11.2   0.2        7.2    4.3   0.0    2.9  3  TIGR00150 HI0065_YjeE: ATPase, YjeE family


Domain annotation for each model (and alignments):
>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.1      0.19        28      18      83 ..     111     178 ..      96     188 .. 0.75
   2 !  697.4   0.0  3.4e-212  4.9e-210     175     730 ..     319     884 ..     297     886 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.19
    TIGR01243  18 ivridrrtaeelgvepgdvveiekgerka.va.ivyrsflddkgkgiirldgylrknagvaigdrvkv 83 
                   v +  ++a+elgv  g+vv + +  r+a +  ++++ + +        +   l kn+ +  gd+vk+
  MMETSP1061-20121228|14082_1 111 AVSLSFKKAKELGVSNGEVVAVIGRRRTAtYGrVLVERKKNKVSSSTCVVSENLAKNLRLRKGDKVKI 178
                  5667778999***********99766654133244555555666677788889999999999999987 PP

  == domain 2    score: 697.4 bits;  conditional E-value: 3.4e-212
    TIGR01243 175 vtyedigglkeavkkirelvelplkhpelfeklgieppkgvllygppgtgktllakavaneagayfiaingpeimskyygeseerlreifkeaeenapsiifideidaiapkreevtgevekrvvaqlltlmdglkgrgkvivigatnrpdaldpalrrpgrfdreieigvpdkegrkeilqihtrnmplaedvdldklaevthgfvgadlaalakeaamaalrrllregkidleaeeipkevleelkvtkkdfkealkmvepsalrevlvevpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargad..lseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresv........ksvakekleaeekeilkdl.kvkkkdflealkkvkpsvskedlrvyeklakelk 730
                    y+ +ggl++a   +rel+e+pl+ pel+   g+  pkgvll gppg gktlla a+ +e+ga+ + ingpeim++  gese +lr+ f+ea e apsiif+de+d+iapkr+e+ ge ekrvv+qlltlmd lk   +v+vigatnrp+ ++ alrrpgrfdre+ei +pd +gr+eil+i+t++m l+ +vdl ++a  thgfvgadl  l+ eaa++++r  l++ +id e e ip+e l+ lkvt + f+ al + +ps+lr+  +evp+ kw diggle+ k+el+e v +p+ ++++fe++g++  +gvl++gppg gktl+aka+a+e ganfi+v+gpe+l  w g se ++r++f kar a+p+i+f+de+d+ia arg+    ++  +dr++nq+l+e+dg+   + + +i+atnrpdildp ++rpgrld+li++p pd e+r+ ifk   r+ p+a+d+ le+la+ t+g++gadi  +++ aa +a+r+++        +  a e  ++e + + + +  ++k +f+ ++ k + sv  e + +y++++ ++k
  MMETSP1061-20121228|14082_1 319 AGYDSVGGLDKATTLMRELIEMPLRFPELWTTAGVPTPKGVLLHGPPGCGKTLLANALVEETGAHVVIINGPEIMARKGGESEANLRQAFEEAAEKAPSIIFMDELDSIAPKRDEAQGETEKRVVSQLLTLMDSLKTNSNVMVIGATNRPNVIESALRRPGRFDRELEIAMPDEDGRHEILKIKTKDMQLDVNVDLFQIARDTHGFVGADLQQLTLEAALQCIRSNLQHLDIDSE-EPIPEEHLDILKVTNDHFTHALSQCDPSTLRDNKIEVPDTKWADIGGLEQTKRELQEMVRYPIEHRHLFERFGMQASRGVLFYGPPGCGKTLMAKAIANECGANFISVKGPELLNAWFGGSEANVRNLFDKARAASPCILFFDEMDSIARARGSGgaGGSDTSDRVINQILSEIDGMGSGKTLFIIGATNRPDILDPGIMRPGRLDQLIYIPLPDFESRVSIFKANLRKSPIADDISLEQLAEATDGFSGADITEICQRAAKNAIRDCItadierqkRVEAGEVTQEEADALPDPVsAITKAHFEASMSKARRSVGPEIIAQYDEFTAKQK 884
                  5699********************************************************************************************************************************************************************************************************************************8888776.67******************************************************************************************************************************************************98521567799**********************************************************************************************************444444422222222222222233333369*************************9987655 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.6   0.1   1.1e-71   1.6e-69     120     350 ..     320     547 ..     305     554 .. 0.95
   2 !  251.2   0.0   2.5e-77   3.6e-75     105     347 ..     579     821 ..     572     835 .. 0.96

  Alignments for each domain:
  == domain 1    score: 232.6 bits;  conditional E-value: 1.1e-71
    TIGR01242 120 syediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdk 350
                   y+ +GGl+k    +re +e+pl+ pel+   G+  pkGvll+GppG+Gktlla a+ eet a  + + g e++ +  Ge    +r+ f+ a ekapsiif+de+d+ia kr +++  G+ e +r + qll+ +d +++  nv vi+atnr+++++ al rpGrfdr +e+ +pd++Gr eilki+t+ m+l  +vdl ++a+ t+G++Gadl+ ++ ea +  ir + ++
  MMETSP1061-20121228|14082_1 320 GYDSVGGLDKATTLMRELIEMPLRFPELWTTAGVPTPKGVLLHGPPGCGKTLLANALVEETGAHVVIINGPEIMARKGGESEANLRQAFEEAAEKAPSIIFMDELDSIAPKRDEAQ--GETE-KRVVSQLLTLMDSLKTNSNVMVIGATNRPNVIESALRRPGRFDRELEIAMPDEDGRHEILKIKTKDMQLDVNVDLFQIARDTHGFVGADLQQLTLEAALQCIRSNLQH 547
                  59**************************************************************************************************************8765..5655.68899**************************************************************************************************98766 PP

  == domain 2    score: 251.2 bits;  conditional E-value: 2.5e-77
    TIGR01242 105 dplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfairee 347
                  dp     +  e p+ ++ diGGle+  re++e v  p+ + +lfe+ G++  +Gvl+yGppG+Gktl+aka+a+e  a fi v g el++ + G     vr++f+ a+  +p+i+f de+d+ia  r    ++G    +r + q+l+e+dG+ +   + +i+atnr+dildp ++rpGr+d+li +plpd+e r+ i+k   rk  +a+d+ le+la+ t+G+sGad+  i+  a  +air+ 
  MMETSP1061-20121228|14082_1 579 DPSTLRDNKIEVPDTKWADIGGLEQTKRELQEMVRYPIEHRHLFERFGMQASRGVLFYGPPGCGKTLMAKAIANECGANFISVKGPELLNAWFGGSEANVRNLFDKARAASPCILFFDEMDSIARARGSGGAGGSDTSDRVINQILSEIDGMGSGKTLFIIGATNRPDILDPGIMRPGRLDQLIYIPLPDFESRVSIFKANLRKSPIADDISLEQLAEATDGFSGADITEICQRAAKNAIRDC 821
                  555555566799*************************************************************************************************************************************************************************************************************************************85 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.9   0.0   2.5e-62   3.7e-60      55     286 ..     321     550 ..     314     559 .. 0.95
   2 !  235.8   0.0   1.3e-72     2e-70      47     280 ..     587     821 ..     565     841 .. 0.93

  Alignments for each domain:
  == domain 1    score: 201.9 bits;  conditional E-value: 2.5e-62
    TIGR01241  55 fkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtl 286
                  ++ v G+d+a   + e+++  L+ p+ +t  G  +PkGvll GpPG GktLla a+  e g   + i G + +    G   + +r  fe+a ++aP+iif+De+D++  kr ++ g+      + + qlL+ mD ++tn +v+v+ atnrp+v+++aL rPGrfDr++ +  Pd  gr+eilk+ +k+++l+ +vdl ++ar t Gf Gadl+ l  eaal + r+n +++++
  MMETSP1061-20121228|14082_1 321 YDSVGGLDKATTLMRELIEMpLRFPELWTTAGVPTPKGVLLHGPPGCGKTLLANALVEETGAHVVIINGPEIMARKGGESEANLRQAFEEAAEKAPSIIFMDELDSIAPKRDEAQGE---TEKRVVSQLLTLMDSLKTNSNVMVIGATNRPNVIESALRRPGRFDRELEIAMPDEDGRHEILKIKTKDMQLDVNVDLFQIARDTHGFVGADLQQLTLEAALQCIRSNLQHLDI 550
                  7889**************987*******************************************************************************************95544...345789****************************************************************************************************9988766 PP

  == domain 2    score: 235.8 bits;  conditional E-value: 1.3e-72
    TIGR01241  47 eeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarkn 280
                  + e + ++++d+ G++++k+el+e+v + + + + f+++G +  +Gvl++GpPG GktL+aka+a e g  f+s+ G ++++ + G   + vr+lf++a+ ++Pci+f De+D++ r+rg g +gg d  ++ +nq+L e+DG+++ + + ++ atnrpd+LD+ ++rPGr+D+ + + +Pd++ r +i+k  ++k  +a++++l+++a++t GfsGad+  ++  aa  a r+ 
  MMETSP1061-20121228|14082_1 587 KIEVPDTKWADIGGLEQTKRELQEMVRYpIEHRHLFERFGMQASRGVLFYGPPGCGKTLMAKAIANECGANFISVKGPELLNAWFGGSEANVRNLFDKARAASPCILFFDEMDSIARARGSGGAGGSDTSDRVINQILSEIDGMGSGKTLFIIGATNRPDILDPGIMRPGRLDQLIYIPLPDFESRVSIFKANLRKSPIADDISLEQLAEATDGFSGADITEICQRAAKNAIRDC 821
                  44556789********************6677788*************************************************************************************************************************************************************************************************9998874 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.8   4.1e+02      64      99 ..     145     180 ..     125     215 .. 0.49
   2 !  148.9   0.0     3e-46   4.4e-44     180     399 ..     320     525 ..     314     554 .. 0.86
   3 !  209.9   0.0   9.7e-65   1.4e-62     175     389 ..     589     790 ..     566     800 .. 0.93
   4 ?    5.0   0.0     0.012       1.7     435     462 ..     798     825 ..     790     847 .. 0.80

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.8
    TIGR03689  64 ftagrkmrvavspeveaaelkaGaevrlneallvve 99 
                  +++ +k +v+ s+ v +++l++  ++r ++++++v 
  MMETSP1061-20121228|14082_1 145 LVERKKNKVSSSTCVVSENLAKNLRLRKGDKVKIVP 180
                  333333333333333333333333333333333333 PP

  == domain 2    score: 148.9 bits;  conditional E-value: 3e-46
    TIGR03689 180 tyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvssdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylte.dlPleedlaeadgdreaav 399
                  +y+ +GGld+  + +r+ +e+P+ ++el++  ++ +PkGvll+GPPGcGktl+a     +l e++       +  + i GPe++ +  Ge+e ++r  fe a    ae  P ++f+de+ds+   r      + e  vv qll+ +d +++ +nv+viGa+nr ++i+ a+ rPGr+d  + i+ Pd+++ ++il+   ++ +l ++ dl +   d++  v
  MMETSP1061-20121228|14082_1 320 GYDSVGGLDKATTLMRELIEMPLRFPELWTTAGVPTPKGVLLHGPPGCGKTLLAN----ALVEET------GAHVVIINGPEIMARKGGESEANLRQAFEEA----AEKAPSIIFMDELDSIAPKRDEA-QGETEKRVVSQLLTLMDSLKTNSNVMVIGATNRPNVIESALRRPGRFDRELEIAMPDEDGRHEILKIKTKDmQLDVNVDLFQIARDTHGFV 525
                  79**************************************************975....566643......34667899*****************888765....55669************999875.6789************************************************************985544326677778877776666555 PP

  == domain 3    score: 209.9 bits;  conditional E-value: 9.7e-65
    TIGR03689 175 evPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGsGvs..sdvettvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakyltedlPleedla 389
                  evPd  +adiGGl++   ++++ v  P  h++l++++++++ +Gvl+yGPPGcGktl+aka+an  ++           f+++kGPelln + G +e ++r +f++ar +    +P ++ffdemds+ r+rGsG +  sd    v+ q+l+e+dG+ s + + +iGa+nr d++dP i+rPGrld  i i  Pd e+   i++  l ++ P+++d++
  MMETSP1061-20121228|14082_1 589 EVPDTKWADIGGLEQTKRELQEMVRYPIEHRHLFERFGMQASRGVLFYGPPGCGKTLMAKAIANECGA----------NFISVKGPELLNAWFGGSEANVRNLFDKARAA----SPCILFFDEMDSIARARGSGGAggSDTSDRVINQILSEIDGMGSGKTLFIIGATNRPDILDPGIMRPGRLDQLIYIPLPDFESRVSIFKANLRKS-PIADDIS 790
                  9**************************************************************97655..........6****************************964....7******************9754499***************************************************************999876.8877765 PP

  == domain 4    score: 5.0 bits;  conditional E-value: 0.012
    TIGR03689 435 kdlvsGamlanivdrakkaaikdelegg 462
                   d  sGa + +i +ra k+ai+d +++ 
  MMETSP1061-20121228|14082_1 798 TDGFSGADITEICQRAAKNAIRDCITAD 825
                  5778********************9763 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   4.4e-09   6.4e-07     313     424 ..     357     464 ..     348     493 .. 0.78
   2 !   28.5   0.0   8.3e-10   1.2e-07     280     411 ..     600     728 ..     589     748 .. 0.75

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 4.4e-09
    TIGR03922 313 kHlllaGPPGtGkttiArvvakiy.aGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdgakddfGleaidtLLarlEndRdrlvviiAGY 424
                  k +ll GPPG Gkt +A+++ +   a + +++ pe+        +++  gesea+  +  ++a ++   ++F+DE+ ++  krd+a+ +    ++ +LL  +++ + +  v++ G 
  MMETSP1061-20121228|14082_1 357 KGVLLHGPPGCGKTLLANALVEETgAHVVIINGPEI--------MARKGGESEANLRQAFEEAAEKapsIIFMDELDSIAPKRDEAQGETEKRVVSQLLTLMDSLKTNSNVMVIGA 464
                  66899*************988764155666666665........56777888888888888887643339********************************98776544444443 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 8.3e-10
    TIGR03922 280 Glervkeqvaa.lkssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLg...gvlFlDEayaLvek.rdg.a.kddfGleaidtLLarlE 411
                  Gle+ k++++  ++  +e + + ++ G+   q s+ +l+ GPPG Gkt +A+++a+  +G       + + v+  +l+  + g sea+  +l dka      +lF+DE+ ++    + g a + d    +i+++L  ++
  MMETSP1061-20121228|14082_1 600 GLEQTKRELQEmVRYPIEHRHLFERFGM---QASRGVLFYGPPGCGKTLMAKAIANE-CGA------NFISVKGPELLNAWFGGSEANVRNLFDKARAaspCILFFDEMDSIARArGSGgAgGSDTSDRVINQILSEID 728
                  7888888775415667777777777787...67999*******************96.886......5667999********************986522269********9877322212134556677787777665 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   2.2e-10   3.2e-08      32     192 ..     358     522 ..     353     532 .. 0.75
   2 !   23.4   0.0     4e-08   5.8e-06      32      69 ..     632     669 ..     604     705 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 2.2e-10
    TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpal..ekpg....Dlaailtaleeg..dvlfiDeihrlskaveellypamedfkldivigkgpaaksvrldlapftlvGattraGkltsPLrd..rfgiverlefYseeeleeivkrsaklleleieeeaaleiarrsr 192
                   vll GPPG Gkt la+ + +e g+++ i++gp++  +k g    +l +++ +  e+  +++f+De+  ++++ +e    + e   +  ++    + k+     ++  ++Gat r   + s Lr   rf    ++   +e+  +ei+k+++k ++l+++ +  ++iar ++
  MMETSP1061-20121228|14082_1 358 GVLLHGPPGCGKTLLANALVEETGAHVVIINGPEImaRKGGeseaNLRQAFEEAAEKapSIIFMDELDSIAPKRDEAQGET-EKRVVSQLLTLMDSLKTN----SNVMVIGATNRPNVIESALRRpgRFDRELEIAMPDEDGRHEILKIKTKDMQLDVNVD-LFQIARDTH 522
                  58*******************************983324341111444444443333338***************987655.444444444443333332....345689*************965599999999999999999***********999865.677887766 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 4e-08
    TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpalekp 69 
                   vl+yGPPG Gkt +ak ia+e g++   ++gp+l  +
  MMETSP1061-20121228|14082_1 632 GVLFYGPPGCGKTLMAKAIANECGANFISVKGPELLNA 669
                  58*******************************99754 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.9e-05    0.0028      24      56 ..     359     391 ..     346     403 .. 0.89
   2 !   14.4   0.0     3e-05    0.0044      18      59 ..     627     668 ..     616     680 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.9e-05
    TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnGda 56 
                  v l GP G+Gkt la ++ ++ +  vv++nG +
  MMETSP1061-20121228|14082_1 359 VLLHGPPGCGKTLLANALVEETGAHVVIINGPE 391
                  7899**************************976 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 3e-05
    TIGR02640  18 lksgypvhlrGPaGtGktslalhvakkrdrPvvllnGdaelk 59 
                  +++ + v + GP G+Gkt +a ++a++ +   + ++G + l+
  MMETSP1061-20121228|14082_1 627 MQASRGVLFYGPPGCGKTLMAKAIANECGANFISVKGPELLN 668
                  5788999*********************99999999976554 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.2e-05    0.0048     120     200 ..     359     433 ..     355     446 .. 0.79
   2 !   15.1   0.0   1.3e-05    0.0019     120     199 ..     633     706 ..     616     730 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.2e-05
    TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarksen 200
                  +ll Gp G Gktlla++l +e    + i +   +  a   Ge   n+     qa +   eka   ii++de+d ia k ++
  MMETSP1061-20121228|14082_1 359 VLLHGPPGCGKTLLANALVEETGAHVVIINGPEIM-ARKGGESEANL----RQAFEEAAEKA-PSIIFMDELDSIAPKRDE 433
                  7999********************99999887764.55567766654....45555556666.57***********88765 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.3e-05
    TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidkiarkse 199
                  +l+ Gp G Gktl+a+++a+e    f       l +a + G +    + +l+++a    + a   i++ de+d iar   
  MMETSP1061-20121228|14082_1 633 VLFYGPPGCGKTLMAKAIANECGANFISVKGPELLNAWFGGSE--ANVRNLFDKA----RAASPCILFFDEMDSIARARG 706
                  7889*********************************999875..4467788776....468899***********9754 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00042     0.061      39      64 ..     355     380 ..     347     386 .. 0.89
   2 !    5.6   0.0    0.0088       1.3     114     181 ..     401     473 ..     385     477 .. 0.76
   3 !   10.9   0.0   0.00021     0.031      39      63 ..     629     653 ..     616     660 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00042
    TIGR02928  39 rpsnvliyGktGtGKtavtkkvlkel 64 
                  +p+ vl+ G++G+GKt+ ++++++e 
  MMETSP1061-20121228|14082_1 355 TPKGVLLHGPPGCGKTLLANALVEET 380
                  7999****************999875 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0088
    TIGR02928 114 kevfeelvkeleeredsliivLDEiDklv.kkeade......lLyeLsraeengdlekakvsvigisndlkflee 181
                  +   ++ ++e  e+  s ii +DE+D++  k+++ +      ++ +L+ + +  +++ ++v vig +n  +++e+
  MMETSP1061-20121228|14082_1 401 EANLRQAFEEAAEKAPS-IIFMDELDSIApKRDEAQgetekrVVSQLLTLMDSLKTN-SNVMVIGATNRPNVIES 473
                  55566666666666555.6679******8544443389999999*****98888888.9*********9998875 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00021
    TIGR02928  39 rpsnvliyGktGtGKtavtkkvlke 63 
                   ++ vl yG++G+GKt+++k++ +e
  MMETSP1061-20121228|14082_1 629 ASRGVLFYGPPGCGKTLMAKAIANE 653
                  45679****************9987 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0       2.8   4.1e+02     105     166 ..     114     178 ..     102     180 .. 0.69
   2 !    8.1   0.0    0.0028      0.41       2      26 ..     359     383 ..     358     414 .. 0.85
   3 !   12.7   0.0    0.0001     0.015       2      29 ..     633     660 ..     632     667 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 2.8
    TIGR01351 105 lkldavielkvpdevlverisgRricpkcgkvynlkfkkpkv...ecddctaellkqReDDteev 166
                  l++++  el v++ ++v  i +Rr+ +      + k +k       + +  a++l+ R+ D+ ++
  MMETSP1061-20121228|14082_1 114 LSFKKAKELGVSNGEVVAVIGRRRTATYGRVLVERKKNKVSSstcVVSENLAKNLRLRKGDKVKI 178
                  56677788999999999988888877666666666666555565655667778888888887665 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0028
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklglv 26 
                  ++l GpPG+GK   a+ l+e++g  
  MMETSP1061-20121228|14082_1 359 VLLHGPPGCGKTLLANALVEETGAH 383
                  6899****************99854 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 0.0001
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhis 29 
                  +++ GpPG+GK  +ak +a+++g   is
  MMETSP1061-20121228|14082_1 633 VLFYGPPGCGKTLMAKAIANECGANFIS 660
                  789********************99998 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     8e-05     0.012      37     182 ..     355     513 ..     343     522 .. 0.67
   2 !    6.9   0.0     0.006      0.88      35      64 ..     627     656 ..     615     669 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8e-05
    TIGR03420  37 aerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaqll........vevle.gleq.aelvalDdvealagerewee.........alfdlynrlresgrkllvageaaPaelklrlpDLrtRlawglvfqlkplsdeeklaaLqeraaerGleLpde 182
                  + + + l G++g+Gk+ L +A+++++ ++   ++ ++  e+   +         +++e ++e+  +++ +D+++++a +r+  +         +l+ l+ +l+++ + +++ +++ P+ ++ +   Lr        ++++  ++++++++L+ + ++ +l+++ +
  MMETSP1061-20121228|14082_1 355 TPKGVLLHGPPGCGKTLLANALVEETGAH---VVIINGPEIMARKggeseanlRQAFEeAAEKaPSIIFMDELDSIAPKRDEAQgetekrvvsQLLTLMDSLKTNSNVMVIGATNRPNVIESA---LRRPGRFDRELEIAMPDEDGRHEILKIKTKDMQLDVNVD 513
                  5667899***************9987554...4444433322222111112223444413444157899*******9776432211122222268889999999999**********999999...777777777778888889999999988877777666554 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.006
    TIGR03420  35 akaerllylwGesgsGksHLLqAacaaaee 64 
                   +a+r + ++G++g+Gk+ + +A+++++ +
  MMETSP1061-20121228|14082_1 627 MQASRGVLFYGPPGCGKTLMAKAIANECGA 656
                  56788899****************999865 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00035     0.052     170     199 ..     351     380 ..     334     385 .. 0.86
   2 !    8.5   0.0   0.00091      0.13     151     198 ..     606     653 ..     596     659 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00035
    TIGR02903 170 laspfpqhiilyGppGvGkttaarlaleea 199
                     p p+ ++l+GppG Gkt  a   +ee+
  MMETSP1061-20121228|14082_1 351 AGVPTPKGVLLHGPPGCGKTLLANALVEET 380
                  56799****************999888875 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00091
    TIGR02903 151 ralseivGqeraikallaklaspfpqhiilyGppGvGkttaarlalee 198
                  r+l+e+v   +  + l+ +      + +++yGppG Gkt +a+ + +e
  MMETSP1061-20121228|14082_1 606 RELQEMVRYPIEHRHLFERFGMQASRGVLFYGPPGCGKTLMAKAIANE 653
                  678888888888899999999999999*************99876555 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1      0.01       1.5     356     375 ..     359     378 ..     353     387 .. 0.84
   2 !   13.4   0.0   2.9e-05    0.0042     356     383 ..     633     660 ..     601     663 .. 0.87

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.01
    TIGR00763 356 lclvGPPGVGKtSlaksiAk 375
                  + l+GPPG GKt la+++ +
  MMETSP1061-20121228|14082_1 359 VLLHGPPGCGKTLLANALVE 378
                  579************98765 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 2.9e-05
    TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvr 383
                  + ++GPPG GKt +ak+iA+  + +f+ 
  MMETSP1061-20121228|14082_1 633 VLFYGPPGCGKTLMAKAIANECGANFIS 660
                  689*****************99999975 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0025      0.37      14      37 ..     356     379 ..     349     383 .. 0.88
   2 ?   -1.7   0.0       2.7     4e+02      95     140 ..     380     428 ..     378     429 .. 0.75
   3 !    9.6   0.0   0.00092      0.14      14      37 ..     630     653 ..     622     661 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0025
    TIGR00678  14 ahAlLfaGpeGvGkealaealaka 37 
                  ++ +L++Gp+G+Gk+ la+al+++
  MMETSP1061-20121228|14082_1 356 PKGVLLHGPPGCGKTLLANALVEE 379
                  6789****************9986 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 2.7
    TIGR00678  95 sgrrvviiedaealne...aaaNaLLKtLEEPpektlflLisespekll 140
                   g  vvii+  e + +   +++  L   +EE+ ek+  ++  ++ +++ 
  MMETSP1061-20121228|14082_1 380 TGAHVVIINGPEIMARkggESEANLRQAFEEAAEKAPSIIFMDELDSIA 428
                  6788999999999987333467778888999998888888877777765 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 0.00092
    TIGR00678  14 ahAlLfaGpeGvGkealaealaka 37 
                  +  +Lf+Gp+G+Gk+ +a+a+a++
  MMETSP1061-20121228|14082_1 630 SRGVLFYGPPGCGKTLMAKAIANE 653
                  6789*****************976 PP

>> TIGR01313  therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0033      0.48       2      29 ..     360     389 ..     359     399 .. 0.78
   2 !   10.3   0.0   0.00065     0.096       4      28 ..     636     660 ..     633     667 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0033
    TIGR01313   2 vlmGvaGsGkstiakelakklgakf..ieG 29 
                  +l G+ G+Gk+ +a++l+++ ga+   i+G
  MMETSP1061-20121228|14082_1 360 LLHGPPGCGKTLLANALVEETGAHVviING 389
                  5789****************9966411566 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00065
    TIGR01313   4 mGvaGsGkstiakelakklgakfie 28 
                   G+ G+Gk+ +ak++a++ ga+fi 
  MMETSP1061-20121228|14082_1 636 YGPPGCGKTLMAKAIANECGANFIS 660
                  6999******************984 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00035     0.052     140     295 ..     359     516 ..     351     544 .. 0.82
   2 !    6.5   0.0    0.0055       0.8     138     163 ..     631     656 ..     619     662 .. 0.83
   3 ?   -3.6   0.0       6.5   9.5e+02     266     286 ..     764     784 ..     762     796 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00035
    TIGR00362 140 lfiyGgvGlGKTHLlqAigneilkknpnakvvYvsaekFvndfvkalrekkieefkekyrsv.DlLLiDDiqflagke.........ktqeeffhtfnalleknkqivltsDrapkelegleeRLkSRfewGLvvdieppdletrlaILkkkaeeeklelpeevle 295
                  ++++G  G GKT L +A+  e     + a vv ++  + +++     + +  ++f+e  +++  ++ +D +  +a k+         ++  +++ ++++l  ++  +v+ + + p+ +e+   R   Rf+  L  +i  pd + r +ILk k++ ++l+++ + ++
  MMETSP1061-20121228|14082_1 359 VLLHGPPGCGKTLLANALVEE-----TGAHVVIINGPEIMARKGGESEANLRQAFEEAAEKApSIIFMDELDSIAPKRdeaqgetekRVVSQLLTLMDSLKTNSNVMVIGATNRPNVIESALRR-PGRFDREL--EIAMPDEDGRHEILKIKTKDMQLDVNVDLFQ 516
                  7899********998876553.....4777999*******99999999999999*999997636788899999998753333322224445789999**********************86655.89***977..7889*****************9999877654 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0055
    TIGR00362 138 nPlfiyGgvGlGKTHLlqAigneilk 163
                    +++yG  G GKT + +Ai+ne+ +
  MMETSP1061-20121228|14082_1 631 RGVLFYGPPGCGKTLMAKAIANECGA 656
                  56899*****************9765 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 6.5
    TIGR00362 266 ieppdletrlaILkkkaeeek 286
                  i  pd+e+r++I+k +++++ 
  MMETSP1061-20121228|14082_1 764 IPLPDFESRVSIFKANLRKSP 784
                  6679*********99988765 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0      0.05       7.3     488     518 ..     358     387 ..     351     397 .. 0.80
   2 ?    2.1   0.0     0.063       9.3     260     322 ..     398     466 ..     393     505 .. 0.67
   3 !    8.0   0.0    0.0011      0.15     490     516 ..     633     659 ..     626     668 .. 0.90
   4 ?    0.5   0.0      0.19        28     260     304 ..     672     717 ..     666     742 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.05
    TIGR02639 488 gsflfvGptGvGktelakqLaeelgvellrf 518
                  g  l  Gp G Gkt la +L ee g +++ +
  MMETSP1061-20121228|14082_1 358 G-VLLHGPPGCGKTLLANALVEETGAHVVII 387
                  4.4678*****************99988755 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.063
    TIGR02639 260 GdfeerlkevveeiekeedailfiDeihtivgagatsggsld...asnlLk...PalasGkirciGstt 322
                  G+ e+ l++  ee  ++   i+f+De+  i      ++g+++   +s+lL       ++ ++ +iG+t 
  MMETSP1061-20121228|14082_1 398 GESEANLRQAFEEAAEKAPSIIFMDELDSIAPKRDEAQGETEkrvVSQLLTlmdSLKTNSNVMVIGATN 466
                  89999*************************987766666665233456553111444677888888885 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0011
    TIGR02639 490 flfvGptGvGktelakqLaeelgvell 516
                   lf+Gp G Gkt +ak++a+e g +++
  MMETSP1061-20121228|14082_1 633 VLFYGPPGCGKTLMAKAIANECGANFI 659
                  69*********************9987 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.19
    TIGR02639 260 GdfeerlkevveeiekeedailfiDeihtivga.gatsggsldasn 304
                  G  e+ ++++ ++ ++ +  ilf De+  i  a g+++ g  d s+
  MMETSP1061-20121228|14082_1 672 GGSEANVRNLFDKARAASPCILFFDEMDSIARArGSGGAGGSDTSD 717
                  56688889999999999999**********9985666667778776 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.15        22      46      69 ..     355     378 ..     352     393 .. 0.84
   2 ?    5.4   0.0     0.011       1.6     237     283 ..     404     450 ..     393     466 .. 0.70
   3 !    6.8   0.0    0.0039      0.57      49     103 ..     632     684 ..     627     688 .. 0.84
   4 ?    0.5   0.0      0.32        47     244     268 ..     686     710 ..     678     732 .. 0.66
   5 ?   -1.6   0.0       1.4   2.1e+02      56     162 ..     802     910 ..     799     922 .. 0.64

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.15
    TIGR00390  46 vPknilmiGstGvGkteiarrlak 69 
                  +Pk +l+ G+ G Gkt +a  l  
  MMETSP1061-20121228|14082_1 355 TPKGVLLHGPPGCGKTLLANALVE 378
                  7***************99988765 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.011
    TIGR00390 237 ikqeavdrvees.GiifideidkiakkgessgadvsreGvqrdllPiv 283
                  ++q   +++e+   iif+de+d ia k ++++ +  +  v   ll ++
  MMETSP1061-20121228|14082_1 404 LRQAFEEAAEKApSIIFMDELDSIAPKRDEAQGETEKRVV-SQLLTLM 450
                  55555566666437***********999766666555443.4566655 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0039
    TIGR00390  49 nilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvGrdveslvrdlvda 103
                   +l  G+ G Gkt +a+ +a   +a fi v      +  + G +    vr+l d+
  MMETSP1061-20121228|14082_1 632 GVLFYGPPGCGKTLMAKAIANECGANFISVKGPELLNAWFGGSEA--NVRNLFDK 684
                  68999*************************999888888888654..46777665 PP

  == domain 4    score: 0.5 bits;  conditional E-value: 0.32
    TIGR00390 244 rveesGiifideidkiakkgessga 268
                  r+ +  i+f de+d ia+   s ga
  MMETSP1061-20121228|14082_1 686 RAASPCILFFDEMDSIARARGSGGA 710
                  667789***********87643333 PP

  == domain 5    score: -1.6 bits;  conditional E-value: 1.4
    TIGR00390  56 tGvGkteiarrlaklaeaPfi..kveatkftevGyvGrdveslvrdlvdaavklvkeekiekvkekaeeaaeerivdkllppaknqfgeee.ekdeeesakealrkklre 162
                  +G   tei +r ak a    i   +e  k  e G v ++    + d v+a  k   e +++k + ++  +++ +  d +   +k ++g    e d++ +  ea +++ re
  MMETSP1061-20121228|14082_1 802 SGADITEICQRAAKNAIRDCItaDIERQKRVEAGEVTQEEADALPDPVSAITKAHFEASMSKARRSVGPEIIAQY-DEFTAKQKASWGAGGgEDDSAYDIDEAAKDQSRE 910
                  577779999999996554444227999999999999999888888877777776666666666666655555443.4555556666666553444444555555555555 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0    0.0032      0.47     113     138 ..     359     384 ..     349     417 .. 0.83
   2 !    8.6   0.0   0.00085      0.12     112     143 ..     632     663 ..     623     705 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0032
    TIGR00602 113 LLitGPsGCgKsTvikiLsKelgikv 138
                   L+ GP+GCgK+     L  e g +v
  MMETSP1061-20121228|14082_1 359 VLLHGPPGCGKTLLANALVEETGAHV 384
                  4789********99999999988876 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00085
    TIGR00602 112 iLLitGPsGCgKsTvikiLsKelgikvqewlN 143
                    L  GP+GCgK+   k ++ e g +++    
  MMETSP1061-20121228|14082_1 632 GVLFYGPPGCGKTLMAKAIANECGANFISVKG 663
                  56889*****************9998876555 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0     0.021       3.1       4      29 ..     360     385 ..     358     415 .. 0.77
   2 !   10.6   0.0   0.00062     0.091       6      30 ..     636     660 ..     632     664 .. 0.90

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.021
    TIGR02173   4 visGpPGsGkttvakilaeklslkli 29 
                   + GpPG Gkt +a+ l e+ + + +
  MMETSP1061-20121228|14082_1 360 LLHGPPGCGKTLLANALVEETGAHVV 385
                  678**************999987755 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00062
    TIGR02173   6 sGpPGsGkttvakilaeklslklis 30 
                   GpPG Gkt +ak +a++ + ++is
  MMETSP1061-20121228|14082_1 636 YGPPGCGKTLMAKAIANECGANFIS 660
                  69******************99998 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.53        78      46      66 ..     360     380 ..     351     506 .. 0.60
   2 !   14.7   0.0   1.7e-05    0.0025       9     134 ..     599     720 ..     592     743 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.53
    TIGR02881  46 ifkGnPGtGkttvarllaklf 66 
                  +++G PG Gkt +a  l +  
  MMETSP1061-20121228|14082_1 360 LLHGPPGCGKTLLANALVEET 380
                  667888888888887655433 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.7e-05
    TIGR02881   9 vGleevkelikeiyalilinekr.keeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikka...lGGvlfideayslar..GGekdfGkeaidtlv 134
                   Gle+ k+ ++e+  + + +++  ++ g++a++    ++f G PG Gkt +a+ +a+   e +     ++i v+  +l+  + G +  ++r++  ka   +  +lf de  s+ar  G     G ++ d ++
  MMETSP1061-20121228|14082_1 599 GGLEQTKRELQEMVRYPIEHRHLfERFGMQASR---GVLFYGPPGCGKTLMAKAIAN---ECG----ANFISVKGPELLNAWFGGSEANVRNLFDKAraaSPCILFFDEMDSIARarGSGGAGGSDTSDRVI 720
                  589999999999988865444431334555555...5679*************9996...443....5788999999********999999988776111568******99998622444444555555554 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.1    0.0012      0.17      83     110 ..     353     380 ..     346     386 .. 0.83
   2 !    6.2   0.0    0.0049      0.71      88     111 ..     632     655 ..     626     693 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0012
    TIGR02902  83 GpnpqhviiyGppGvGktaaarlvleea 110
                   p p+ v+++GppG Gkt  a   +ee+
  MMETSP1061-20121228|14082_1 353 VPTPKGVLLHGPPGCGKTLLANALVEET 380
                  599***************9888777765 PP

  == domain 2    score: 6.2 bits;  conditional E-value: 0.0049
    TIGR02902  88 hviiyGppGvGktaaarlvleeak 111
                   v+ yGppG Gkt  a+ + +e  
  MMETSP1061-20121228|14082_1 632 GVLFYGPPGCGKTLMAKAIANECG 655
                  5899**********9998887765 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.1    0.0051      0.74     214     231 ..     359     376 ..     350     379 .. 0.87
   2 !    8.2   0.0    0.0012      0.18     213     231 ..     632     650 ..     624     654 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0051
    TIGR00368 214 llllGPPGsGktllakrl 231
                  +ll GPPG Gktlla+ l
  MMETSP1061-20121228|14082_1 359 VLLHGPPGCGKTLLANAL 376
                  799***********9875 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0012
    TIGR00368 213 nllllGPPGsGktllakrl 231
                   +l+ GPPG Gktl+ak +
  MMETSP1061-20121228|14082_1 632 GVLFYGPPGCGKTLMAKAI 650
                  589*************987 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.39        56      39      71 ..     138     170 ..     121     180 .. 0.86
   2 ?    3.5   0.0     0.044       6.4     143     171 ..     355     383 ..     342     395 .. 0.84
   3 ?    5.0   0.0     0.016       2.3     117     167 ..     601     653 ..     591     658 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.39
    TIGR02788  39 lkrlaravasaskqsiseekPilsaeLpngeRv 71 
                    +  r++++ +k+++s+++ ++s +L+++ R+
  MMETSP1061-20121228|14082_1 138 TATYGRVLVERKKNKVSSSTCVVSENLAKNLRL 170
                  55667889999******************9986 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.044
    TIGR02788 143 akkniiisGgtgsgKTTflkalvkliPke 171
                  + k +++ G +g gKT + +alv++  ++
  MMETSP1061-20121228|14082_1 355 TPKGVLLHGPPGCGKTLLANALVEETGAH 383
                  66899******************987666 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.016
    TIGR02788 117 lsdadeellellka..gdikeFlklaiaakkniiisGgtgsgKTTflkalvkl 167
                  l+++++el+e+ +   ++ + F +  ++a + ++  G +g gKT + ka+ ++
  MMETSP1061-20121228|14082_1 601 LEQTKRELQEMVRYpiEHRHLFERFGMQASRGVLFYGPPGCGKTLMAKAIANE 653
                  6677888888776422567789999************************9876 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.0      0.05       7.4      33      67 ..     359     391 ..     353     401 .. 0.72
   2 ?    6.0   0.0    0.0085       1.3      30      51 ..     630     651 ..     608     659 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.05
    TIGR03265  33 vclLGPsGCGkttLLriiaGLekqdaGaillggrd 67 
                  v l GP GCGkt L  ++  +e++ a  ++++g +
  MMETSP1061-20121228|14082_1 359 VLLHGPPGCGKTLLANAL--VEETGAHVVIINGPE 391
                  5678*******9886654..455555555556555 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0085
    TIGR03265  30 gelvclLGPsGCGkttLLriia 51 
                  +  v + GP GCGkt + ++ia
  MMETSP1061-20121228|14082_1 630 SRGVLFYGPPGCGKTLMAKAIA 651
                  4457899*********999998 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.49        72      39      56 ..     359     376 ..     355     379 .. 0.84
   2 ?    8.2   0.0    0.0019      0.28      37      58 ..     631     652 ..     613     657 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.49
    TIGR02397  39 yLfsGprGvGKTsiAril 56 
                   L+ Gp G+GKT +A  l
  MMETSP1061-20121228|14082_1 359 VLLHGPPGCGKTLLANAL 376
                  699*********998765 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0019
    TIGR02397  37 hayLfsGprGvGKTsiArilAk 58 
                     Lf+Gp G+GKT +A+ +A+
  MMETSP1061-20121228|14082_1 631 RGVLFYGPPGCGKTLMAKAIAN 652
                  5679**************9996 PP

>> TIGR03877  thermo_KaiC_1: KaiC domain protein, Ph0284 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.012       1.7      17      42 ..     351     376 ..     344     392 .. 0.88
   2 ?    0.3   0.0      0.61        89      23      41 ..     631     649 ..     623     655 .. 0.83
   3 ?    0.7   0.0      0.44        65     174     201 ..     703     730 ..     688     739 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.012
    TIGR03877  17 ggipernvvllsggpgtgksilsqqf 42 
                   g+p  + vll g pg gk++l++  
  MMETSP1061-20121228|14082_1 351 AGVPTPKGVLLHGPPGCGKTLLANAL 376
                  799******************99765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.61
    TIGR03877  23 nvvllsggpgtgksilsqq 41 
                  + vl+ g pg gk+++++ 
  MMETSP1061-20121228|14082_1 631 RGVLFYGPPGCGKTLMAKA 649
                  568999**********985 PP

  == domain 3    score: 0.7 bits;  conditional E-value: 0.44
    TIGR03877 174 aergfggpgvehavdgiirldldeidge 201
                    rg gg g   + d +i   l eidg 
  MMETSP1061-20121228|14082_1 703 RARGSGGAGGSDTSDRVINQILSEIDGM 730
                  579***********************95 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.049       7.2      24      50 ..     358     384 ..     348     391 .. 0.84
   2 ?    3.1   0.0      0.12        17      25      49 ..     633     657 ..     619     666 .. 0.82
   3 ?   -1.5   0.0       3.1   4.5e+02      31      42 ..     730     741 ..     720     744 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.049
    TIGR00150  24 vvlLkGdlGaGKttlvkgllkglGiqg 50 
                   vlL+G  G GKt l  +l+++ G + 
  MMETSP1061-20121228|14082_1 358 GVLLHGPPGCGKTLLANALVEETGAHV 384
                  589******************999764 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.12
    TIGR00150  25 vlLkGdlGaGKttlvkgllkglGiq 49 
                  vl +G  G GKt + k+++++ G +
  MMETSP1061-20121228|14082_1 633 VLFYGPPGCGKTLMAKAIANECGAN 657
                  6789999**************9986 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 3.1
    TIGR00150  31 lGaGKttlvkgl 42 
                  +G+GKt ++ g 
  MMETSP1061-20121228|14082_1 730 MGSGKTLFIIGA 741
                  9*****998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (937 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      184  (0.0448562); expected 82.0 (0.02)
Passed Vit filter:                        58  (0.0141394); expected 4.1 (0.001)
Passed Fwd filter:                        28  (0.00682594); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              28  [number of targets reported over threshold]
# CPU time: 0.82u 0.16s 00:00:00.98 Elapsed: 00:00:00.56
# Mc/sec: 2169.72
//
Query:       MMETSP1061-20121228|14089_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 905.93
//
Query:       MMETSP1061-20121228|14086_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-10   38.2   0.2    3.9e-10   37.5   0.1    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    1.8e-06   26.3   0.0    4.5e-06   25.0   0.0    1.6  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
    4.4e-06   24.0   0.2    1.4e-05   22.3   0.1    1.7  2  TIGR00478 tly: hemolysin TlyA family protein
    1.4e-05   22.3   0.2    2.3e-05   21.6   0.1    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0001   20.4   0.1    0.00023   19.3   0.0    1.5  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    0.00081   16.7   0.0     0.0013   16.0   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    0.00085   16.6   0.1     0.0014   15.9   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
     0.0015   16.1   0.1     0.0034   14.9   0.1    1.6  1  TIGR00537 hemK_rel_arch: putative methylase
     0.0084   13.3   0.1      0.013   12.6   0.1    1.3  1  TIGR00477 tehB: tellurite resistance protein TehB
     0.0098   13.1   0.1      0.016   12.4   0.0    1.2  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
  ------ inclusion threshold ------
      0.028   11.5   0.0      0.044   10.9   0.0    1.2  1  TIGR00755 ksgA: dimethyladenosine transferase
      0.029   11.3   0.2      0.048   10.5   0.1    1.3  1  TIGR00536 hemK_fam: methyltransferase, HemK family
       0.03   12.0   0.1      0.047   11.3   0.0    1.2  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.1   1.2e-12   3.9e-10     157     217 ..      72     131 ..      67     144 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 1.2e-12
    TIGR00406 157 dlkdkkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklen 217
                  + kdk v+DvG+GSGiLs+ a++ ga+kv+a++   +a + ar+ ++ N+v+d++ v++  
  MMETSP1061-20121228|14086_1  72 VFKDKIVMDVGTGSGILSVWAAQAGARKVYAIEYTDMA-KHARQVMKANGVEDIVTVIQGA 131
                  6799*****************************99988.889**************99875 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   1.4e-08   4.5e-06       2      60 ..      78     135 ..      77     151 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 1.4e-08
    TIGR01444   2 viDiGAniGdvslvfaravaegrviafEPlpdllekleenvklnnlkn.vkllnaAvgdr 60 
                  v+D+G   G +s+++a+a+a+ +v+a+E   d+++++++ +k n++++ v++++ Av d 
  MMETSP1061-20121228|14086_1  78 VMDVGTGSGILSVWAAQAGAR-KVYAIE-YTDMAKHARQVMKANGVEDiVTVIQGAVEDI 135
                  89******************9.******.89************************99875 PP

>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.1   4.5e-08   1.4e-05      74     111 ..      73     108 ..      65     124 .. 0.88
   2 ?   -1.6   0.0      0.93   2.9e+02      95     108 ..     228     241 ..     217     252 .. 0.73

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4.5e-08
    TIGR00478  74 vknkivlDvGsStGGFtdcalqkGAkkvygvdvgknql 111
                  +k+kiv+DvG+  G  +  a q GA+kvy++++    +
  MMETSP1061-20121228|14086_1  73 FKDKIVMDVGTGSGILSVWAAQAGARKVYAIEYTD--M 108
                  79******************************987..3 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.93
    TIGR00478  95 qkGAkkvygvdvgk 108
                  q+  k+vygvd+  
  MMETSP1061-20121228|14086_1 228 QETTKQVYGVDMEV 241
                  67789*****9765 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.1   7.3e-08   2.3e-05      44     109 ..      69     135 ..      41     142 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 7.3e-08
    TIGR01983  44 nekkleglkvlDvGcGgGllseslarlgae.vtgiDlseelievAklhakkdplk.kieyelksveel 109
                  n++ ++++ v+DvG+G+G+ls   a+ ga  v +i+ + ++ ++A++  k+++++  +   + +ve++
  MMETSP1061-20121228|14086_1  69 NSDVFKDKIVMDVGTGSGILSVWAAQAGARkVYAIEYT-DMAKHARQVMKANGVEdIVTVIQGAVEDI 135
                  336678999********************98****986.67899*******99996667777788877 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.3e-07   0.00023      19      79 ..      74     132 ..      64     156 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 7.3e-07
    TIGR02469  19 kgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdap 79 
                  k++ ++D+G G+G +++ aa++  + +vyaie +   ++  ++ ++++gv++i++v ++a 
  MMETSP1061-20121228|14086_1  74 KDKIVMDVGTGSGILSVWAAQAGAR-KVYAIEYTDM-AKHARQVMKANGVEDIVTVIQGAV 132
                  67899************87776655.9*****8765.556788888888988887776554 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   4.3e-06    0.0013      90     147 ..      76     132 ..      61     161 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.3e-06
    TIGR03534  90 lkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdl 147
                    v+D+gtGsG++ +  a+     kv+a++ ++ A k ar+ +k++g+++ v+++++ +
  MMETSP1061-20121228|14086_1  76 KIVMDVGTGSGILSVWAAQA-GARKVYAIEYTDMA-KHARQVMKANGVEDiVTVIQGAV 132
                  3699********99977665.66677777777665.56777777777877788888766 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.6e-06    0.0014      30     107 ..      49     127 ..      39     138 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.6e-06
    TIGR02021  30 rqtvreGreamrekllewlpkd.slkGkkvlDAGCGtGllsielAkrGai.vkavDiseklvelarkraekedeaenveF 107
                  ++++ + ++ m +    +l++    k k v+D G G+G+ls+  A+ Ga+ v a++ + ++ + ar+ ++++ + + v+ 
  MMETSP1061-20121228|14086_1  49 QKQMLADHNRMAAYHSAILGNSdVFKDKIVMDVGTGSGILSVWAAQAGARkVYAIEYT-DMAKHARQVMKANGVEDIVTV 127
                  56777788888888888898876999**********************9648888875.699999999999887766554 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.1   1.1e-05    0.0034      14      67 ..      69     122 ..      61     139 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.1e-05
    TIGR00537  14 nlrelknddvleiGaGtGlvairlkekgk.kivatdinPfavkllkenaklnnve 67 
                  n ++ k++ v+++G+G+G++++ +++ g+ k+ a++   +a k +++  k n+ve
  MMETSP1061-20121228|14086_1  69 NSDVFKDKIVMDVGTGSGILSVWAAQAGArKVYAIEYTDMA-KHARQVMKANGVE 122
                  567788888*************9999998888888777665.4555556667765 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   4.3e-05     0.013      37     116 ..      39     118 ..      16     142 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.3e-05
    TIGR00477  37 dlevtlelyikkedyfskkyeltathsevleavkvvapcktldlGcGqGrnslylslaGy.dvdavdkneasiasveeike 116
                   +    +l  ++++ +++   ++a hs++l    v +   ++d+G G G  s++ + aG   v a++ ++++  + + +k+
  MMETSP1061-20121228|14086_1  39 YFCSYAQL-YHQKQMLADHNRMAAYHSAILGNSDVFKDKIVMDVGTGSGILSVWAAQAGArKVYAIEYTDMAKHARQVMKA 118
                  44333344.455677889999***********************************9995267777777776554444444 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     5e-05     0.016     123     174 ..      76     125 ..      62     136 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5e-05
    TIGR03533 123 krvldlctGsGClaiaaaeaf..peaevdavDisedaLevaeenieeyeledrv 174
                  k v+d+ tGsG l++ aa+a   +   ++ +D++++a +v ++n    ++ed v
  MMETSP1061-20121228|14086_1  76 KIVMDVGTGSGILSVWAAQAGarKVYAIEYTDMAKHARQVMKAN----GVEDIV 125
                  669************99987511557899999*99999999888....444445 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00014     0.044      19      84 ..      64     132 ..      50     149 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00014
    TIGR00755  19 qkiveaaeveesdvvlEiGpGlGaLTeellekakk.vvaiEiDkrlaekLrkkle...leekleviegDa 84 
                  + i+ +++v +++ v+ +G G G L+   ++  ++ v+aiE   ++a++ r+ ++   +e  ++vi+g +
  MMETSP1061-20121228|14086_1  64 SAILGNSDVFKDKIVMDVGTGSGILSVWAAQAGARkVYAIEYT-DMAKHARQVMKangVEDIVTVIQGAV 132
                  56888899999****************999987655*****84.45555555544333777777777655 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   0.00015     0.048     117     172 ..      77     130 ..      59     137 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00015
    TIGR00536 117 hilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqs 172
                   ++D+gtGsG  ++  A + +  +v+a+     a + a++ ++ +++e+ v +iq+
  MMETSP1061-20121228|14086_1  77 IVMDVGTGSGILSVWAAQAGA-RKVYAIEYTDMA-KHARQVMKANGVEDIVTVIQG 130
                  478***********8888877.788888765444.667777888888888888887 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015     0.047      74     133 ..      71     128 ..      34     133 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00015
    TIGR00080  74 elkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLeldn.vivk 133
                  ++ + + v+++GtGsG +++  a+   r   v +ie   +++++a++ +k  + ++ v+v+
  MMETSP1061-20121228|14086_1  71 DVFKDKIVMDVGTGSGILSVWAAQAGAR--KVYAIEY-TDMAKHARQVMKANGVEDiVTVI 128
                  56777889****************9999..8****97.57899999999998876614444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.24
# Mc/sec: 2568.29
//
Query:       MMETSP1061-20121228|14112_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.9   0.0      0.022   11.4   0.0    1.1  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.4e-06     0.022     169     204 ..     135     170 ..     124     181 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.4e-06
    TIGR00115 169 eggkaedfelelgsgqfipgfeeqlvGmkaGeekei 204
                  +g  a    ++lg+g+ ipg+e ++vGm ++ ++ i
  MMETSP1061-20121228|14112_1 135 DGFGAIPLTVTLGKGEAIPGLESGIVGMRKNGVRRI 170
                  5556666789*******************9977655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 1116.83
//
Query:       MMETSP1061-20121228|14144_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.55    8.1   4.4        3.8    5.4   0.5    2.3  2  TIGR03493 cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT


Domain annotation for each model (and alignments):
>> TIGR03493  cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.7    0.0028        11       9      18 ..      33      42 ..      22      44 .. 0.64
   2 ?    5.4   0.5   0.00092       3.8       8      19 ..      44      55 ..      38      56 .] 0.89

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0028
    TIGR03493  9 lvllcAliff 18
                 lv + Al+ff
  MMETSP1061-20121228|14144_1 33 LVFFGALVFF 42
                 5556666666 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.00092
    TIGR03493  8 qlvllcAliffp 19
                 +lv+l Al+ff+
  MMETSP1061-20121228|14144_1 44 DLVGLGALVFFG 55
                 69*********7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.33
# Mc/sec: 223.98
//
Query:       MMETSP1061-20121228|14149_1  [L=850]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-08   30.9   3.3     0.0067   14.3   0.0    4.4  4  TIGR00405 L26e_arch: ribosomal protein L24
    0.00021   19.5  20.9       0.27    9.6   0.0    6.5  6  TIGR01079 rplX_bact: ribosomal protein L24
    0.00058   17.6   4.8       0.52    8.0   0.5    3.8  4  TIGR00922 nusG: transcription termination/antitermination factor NusG
     0.0035   15.6  14.9       0.13   10.4   0.1    5.7  6  TIGR01080 rplX_A_E: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR00405  L26e_arch: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   6.6e-06    0.0067      21     114 ..      26     118 ..       4     144 .. 0.79
   2 ?    3.2   0.1     0.017        18      86     113 ..     267     294 ..     252     301 .. 0.87
   3 ?    2.3   0.2     0.033        34      82     116 ..     319     353 ..     309     378 .. 0.71
   4 !    7.8   0.0   0.00066      0.67      85     113 ..     456     484 ..     449     488 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 6.6e-06
    TIGR00405  21 arkenlevysilapeslkGyilveaetkddlreaikglprvrGvvegeidfeeierlltpkkiiesikkGdvveiisGpfkGerakvirvdeak 114
                   + + l +  ++a +s kG i +e+  +  + eai g+  +       i ++++  ++t  +    +kk + v +  G +kG+ a vi v e+ 
  MMETSP1061-20121228|14149_1  26 RQGRPLGICGVIAGQS-KGRIYLESYNEPAVVEAITGVRGLLQYTMRLIPIQDMTTVMTVVPKKRPVKKNEWVRMTRGHYKGDLALVIAVRESG 118
                  4445677777777765.9**********99999999975555555577888888888888888899***********************99875 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.017
    TIGR00405  86 sikkGdvveiisGpfkGerakvirvdea 113
                   i  Gd++e++ G + G + kv+ +d +
  MMETSP1061-20121228|14149_1 267 GIMTGDKIEVVEGDLIGMKGKVMSMDGT 294
                  5889******************999965 PP

  == domain 3    score: 2.3 bits;  conditional E-value: 0.033
    TIGR00405  82 kiiesikkGdvveiisGpfkGerakvirvdeakee 116
                  ++ ++i  G  v+++ G +  e   v+ v+e   e
  MMETSP1061-20121228|14149_1 319 QVRKHIAVGAHVKVVDGRYTNETGTVVAVEEVDGE 353
                  56678999************999999988776544 PP

  == domain 4    score: 7.8 bits;  conditional E-value: 0.00066
    TIGR00405  85 esikkGdvveiisGpfkGerakvirvdea 113
                  ++++ Gd v +  Gp kG+ a ++r+ ++
  MMETSP1061-20121228|14149_1 456 NQMRCGDQVTVAEGPQKGKTATIKRMSRS 484
                  58899********************9876 PP

>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0022       2.3       3      39 ..      90     126 ..      88     130 .. 0.92
   2 !    4.7   1.1    0.0083       8.5       4      27 ..     268     291 ..     266     298 .. 0.88
   3 ?    3.4   0.2     0.021        21       2      38 ..     322     363 ..     321     387 .. 0.74
   4 !    9.6   0.0   0.00026      0.27       3      30 ..     457     484 ..     455     496 .. 0.90
   5 ?   -1.3   0.3      0.64   6.6e+02       7      34 ..     552     579 ..     551     602 .. 0.73
   6 ?    4.2   0.2     0.012        12       5      27 ..     800     822 ..     796     838 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0022
    TIGR01079   3 kikkgDtVlvisGkdkGkkGkvlkvlpkkdkviVegv 39 
                   +kk+  V + +G  kG  + v++v ++  k iV+ v
  MMETSP1061-20121228|14149_1  90 PVKKNEWVRMTRGHYKGDLALVIAVRESGLKCIVQCV 126
                  59*******************************9976 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0083
    TIGR01079   4 ikkgDtVlvisGkdkGkkGkvlkv 27 
                  i  gD++ v+ G+  G kGkv+++
  MMETSP1061-20121228|14149_1 268 IMTGDKIEVVEGDLIGMKGKVMSM 291
                  678******************975 PP

  == domain 3    score: 3.4 bits;  conditional E-value: 0.021
    TIGR01079   2 akikkgDtVlvisGkdkGkkGkvlkvlpkkdk.....viVeg 38 
                  ++i  g +V+v+ G    ++G+v++v + +       v+  +
  MMETSP1061-20121228|14149_1 322 KHIAVGAHVKVVDGRYTNETGTVVAVEEVDGEkdftaVVLTD 363
                  589999******************998765322444455554 PP

  == domain 4    score: 9.6 bits;  conditional E-value: 0.00026
    TIGR01079   3 kikkgDtVlvisGkdkGkkGkvlkvlpk 30 
                  +++ gD+V+v  G +kGk++++ ++ ++
  MMETSP1061-20121228|14149_1 457 QMRCGDQVTVAEGPQKGKTATIKRMSRS 484
                  6789******************998765 PP

  == domain 5    score: -1.3 bits;  conditional E-value: 0.64
    TIGR01079   7 gDtVlvisGkdkGkkGkvlkvlpkkdkv 34 
                  g tV + +G+ kG  G v  ++ ++ +v
  MMETSP1061-20121228|14149_1 552 GKTVRIQAGQWKGYLGGVCDATATHVQV 579
                  5688999999999999999988875443 PP

  == domain 6    score: 4.2 bits;  conditional E-value: 0.012
    TIGR01079   5 kkgDtVlvisGkdkGkkGkvlkv 27 
                  k+ D+Vlvi G d G +G+++ +
  MMETSP1061-20121228|14149_1 800 KEKDMVLVIGGADVGVEGELVCI 822
                  789***************98755 PP

>> TIGR00922  nusG: transcription termination/antitermination factor NusG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.021        22     118     150 ..     267     299 ..     236     323 .. 0.73
   2 !    8.0   0.5    0.0005      0.52     115     147 ..     320     355 ..     311     362 .. 0.77
   3 !    6.3   0.0    0.0017       1.7     111     144 ..     450     483 ..     409     488 .. 0.75
   4 ?   -3.2   0.0       1.4   1.4e+03     121     145 ..     551     575 ..     546     585 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.021
    TIGR00922 118 efekgeqvrvieGpFanftgtveevdkekkklk 150
                     +g++++v+eG    ++g+v ++d    k+k
  MMETSP1061-20121228|14149_1 267 GIMTGDKIEVVEGDLIGMKGKVMSMDGTTIKIK 299
                  5678*******************9998887776 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0005
    TIGR00922 115 skvefekgeqvrvieGpFanftgtv...eevdkekk 147
                  ++++  +g +v+v++G ++n tgtv   eevd ek 
  MMETSP1061-20121228|14149_1 320 VRKHIAVGAHVKVVDGRYTNETGTVvavEEVDGEKD 355
                  4567789****************9722266666665 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0017
    TIGR00922 111 ekpkskvefekgeqvrvieGpFanftgtveevdk 144
                     ++ +++  g+qv+v eGp +  t+t++ ++ 
  MMETSP1061-20121228|14149_1 450 ALDVQGNQMRCGDQVTVAEGPQKGKTATIKRMSR 483
                  455678999**************99999998765 PP

  == domain 4    score: -3.2 bits;  conditional E-value: 1.4
    TIGR00922 121 kgeqvrvieGpFanftgtveevdke 145
                   g++vr+  G ++ + g v + ++ 
  MMETSP1061-20121228|14149_1 551 IGKTVRIQAGQWKGYLGGVCDATAT 575
                  6899******999999988766555 PP

>> TIGR01080  rplX_A_E: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.0    0.0058       5.9      40      68 ..      89     117 ..      83     129 .. 0.81
   2 !   10.4   0.1   0.00013      0.13      42      72 ..     268     298 ..     252     304 .. 0.87
   3 ?   -0.2   0.2      0.27   2.8e+02      42      66 ..     324     348 ..     318     373 .. 0.77
   4 ?    3.2   0.0     0.023        24      40      70 ..     456     486 ..     443     501 .. 0.83
   5 ?    0.4   0.1      0.17   1.7e+02      46      74 ..     553     581 ..     550     596 .. 0.80
   6 ?    0.3   0.1      0.18   1.9e+02      43      66 ..     800     823 ..     792     829 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0058
    TIGR01080  40 lpvrkgdkvrilrGdfkGkeGkvlkvdlk 68 
                   pv+k++ vr+ rG++kG    v+ v   
  MMETSP1061-20121228|14149_1  89 RPVKKNEWVRMTRGHYKGDLALVIAVRES 117
                  59****************99999988765 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00013
    TIGR01080  42 vrkgdkvrilrGdfkGkeGkvlkvdlkryri 72 
                  +  gdk++++ Gd  G  Gkv+++d   ++i
  MMETSP1061-20121228|14149_1 268 IMTGDKIEVVEGDLIGMKGKVMSMDGTTIKI 298
                  7789*******************99776665 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.27
    TIGR01080  42 vrkgdkvrilrGdfkGkeGkvlkvd 66 
                  +  g +v+++ G +  + G v+ v+
  MMETSP1061-20121228|14149_1 324 IAVGAHVKVVDGRYTNETGTVVAVE 348
                  5568899*******99999998875 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.023
    TIGR01080  40 lpvrkgdkvrilrGdfkGkeGkvlkvdlkry 70 
                   ++r gd+v +  G  kGk   + ++ + + 
  MMETSP1061-20121228|14149_1 456 NQMRCGDQVTVAEGPQKGKTATIKRMSRSQL 486
                  5789***************999998877665 PP

  == domain 5    score: 0.4 bits;  conditional E-value: 0.17
    TIGR01080  46 dkvrilrGdfkGkeGkvlkvdlkryriyv 74 
                    vri  G+ kG+ G v +    ++++++
  MMETSP1061-20121228|14149_1 553 KTVRIQAGQWKGYLGGVCDATATHVQVEL 581
                  67999**********99987777666654 PP

  == domain 6    score: 0.3 bits;  conditional E-value: 0.18
    TIGR01080  43 rkgdkvrilrGdfkGkeGkvlkvd 66 
                  ++ d v ++ G   G eG+++ +d
  MMETSP1061-20121228|14149_1 800 KEKDMVLVIGGADVGVEGELVCID 823
                  6789***************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.37u 0.12s 00:00:00.49 Elapsed: 00:00:00.41
# Mc/sec: 2736.36
//
Query:       MMETSP1061-20121228|14160_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-69  230.2   0.0    7.2e-69  229.5   0.0    1.3  1  TIGR01351 adk: adenylate kinases
    7.1e-33  111.7   0.0    7.7e-23   79.0   0.0    2.3  2  TIGR01360 aden_kin_iso1: adenylate kinase
    2.2e-32  110.3   0.0    2.6e-22   77.5   0.0    2.3  2  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
  ------ inclusion threshold ------
      0.011   13.6   0.2      0.043   11.6   0.0    2.0  2  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.5   0.0     7e-72   7.2e-69       2     211 ..     131     352 ..     130     353 .. 0.98

  Alignments for each domain:
  == domain 1    score: 229.5 bits;  conditional E-value: 7e-72
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklglvhistGdllRaevkkktelgkkakeylekGklvpdeiviklvkerleeeedeekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRricpkcgkvynlkfkkpkv.............ecddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgklveidaekkieevlkeileal 211
                  ++l+GpPG+GKGT + ++ + lg++ +stGd+lRa+v+++te+gkkak+++++G lv+d+iv+ ++++r++e +d++ gfiLDGfPRtl+Q++aLd++l+e g+ +++viel+vpd+vl eri+gR+i++k+g++y++k+++pk              ++dd t+e l+qR+DDt++++ kRl  Y+ +t p++++Y+ +g++  ++a++ ++ v++eil+al
  MMETSP1061-20121228|14160_1 131 MILFGPPGAGKGTHGPKIEDLLGIPALSTGDMLRAAVSAGTEVGKKAKAVMDAGGLVSDDIVVGIIRDRIKE-DDCKFGFILDGFPRTLAQTKALDKMLSEEGAAVTKVIELEVPDSVLEERITGRWIHKKSGRSYHVKYAPPKSmkkdasgapiaesMTDDLTGEPLMQRKDDTAKALTKRLAGYHGETVPILKHYQPNGIVKGVNANQGMDGVWAEILAAL 352
                  79********************************************************************88.88********************************************************************999999***9999998999*********************************************************9987 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.0   0.0   7.5e-26   7.7e-23       4     126 ..     129     254 ..     127     266 .. 0.85
   2 !   30.8   0.0   4.3e-11   4.4e-08     132     186 ..     299     353 ..     252     355 .] 0.85

  Alignments for each domain:
  == domain 1    score: 79.0 bits;  conditional E-value: 7.5e-26
    TIGR01360   4 kiifivGGpGsGkGtqcekivekyGfthlssGdllreevasgsergkklqaimekGelvpldvvldllkeallkalekskGflidGyprevkqGeefekriaea....klvlyldvsedtlvkrllk 126
                  +i+ + G pG+GkGt   ki +  G+  ls+Gd+lr+ v++g+e gkk +a+m+ G+lv+ d+v+ ++++ + k+ +   Gf++dG+pr  +q + ++k ++e     + v+ l+v +  l +r+  
  MMETSP1061-20121228|14160_1 129 NIMILFGPPGAGKGTHGPKIEDLLGIPALSTGDMLRAAVSAGTEVGKKAKAVMDAGGLVSDDIVVGIIRDRI-KEDDCKFGFILDGFPRTLAQTKALDKMLSEEgaavTKVIELEVPDSVLEERITG 254
                  57888899**************************************************************97.4556678****************9998876411115566777777777777665 PP

  == domain 2    score: 30.8 bits;  conditional E-value: 4.3e-11
    TIGR01360 132 arvddnektikkrletykkatepvieyyeskgkllkinaegtvddvflevvaald 186
                   r+dd++k++ krl  y+ +t p++++y+++g+++ +na++ +d v++e+ aal 
  MMETSP1061-20121228|14160_1 299 QRKDDTAKALTKRLAGYHGETVPILKHYQPNGIVKGVNANQGMDGVWAEILAALK 353
                  599***********************************************99985 PP

>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.5   0.0   2.6e-25   2.6e-22       2     133 ..     131     264 ..     130     277 .. 0.93
   2 !   30.7   0.0   5.6e-11   5.7e-08     131     184 ..     299     352 ..     285     353 .. 0.93

  Alignments for each domain:
  == domain 1    score: 77.5 bits;  conditional E-value: 2.6e-25
    TIGR01359   2 vfvlGgPGsGkGtqCakiveefkfvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikeseeskkflidGfPrneenleawekli.dekvevkfvlfldcseevmvkrllkr..gqssGrv 133
                  + ++G+PG+GkGt   ki + +++  ls+Gd+lr++++  g e g+  + ++  G +v  ++ v +++++ike++ +  f++dGfPr    ++a  k++ +e + v+ v+ l+++++v+ +r++ r   ++sGr+
  MMETSP1061-20121228|14160_1 131 MILFGPPGAGKGTHGPKIEDLLGIPALSTGDMLRAAVS-AGTEVGKKAKAVMDAGGLVSDDIVVGIIRDRIKEDDCKFGFILDGFPRTLAQTKALDKMLsEEGAAVTKVIELEVPDSVLEERITGRwiHKKSGRS 264
                  5678**********************************.9***********************************9********************998566799999*****************9555679997 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 5.6e-11
    TIGR01359 131 Grvddnieslkkrletykeetlpvieyfekknkvkkidaeksveevfeevekif 184
                   r+dd  ++l+krl  y+ et+p++++++ ++ vk ++a++ ++ v++e+ + +
  MMETSP1061-20121228|14160_1 299 QRKDDTAKALTKRLAGYHGETVPILKHYQPNGIVKGVNANQGMDGVWAEILAAL 352
                  599**********************************************98765 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   4.2e-05     0.043       2      50 ..     130     178 ..     129     184 .. 0.88
   2 ?   -1.1   0.0      0.35   3.5e+02      71      86 ..     242     258 ..     194     263 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.2e-05
    TIGR02173   2 iivisGpPGsGkttvakilaeklslklisaGkirelaekkgldlaeskk 50 
                  i+++ GpPG+Gk t   ++ + l++  +s+G++   a + g ++ ++ k
  MMETSP1061-20121228|14160_1 130 IMILFGPPGAGKGTHGPKIEDLLGIPALSTGDMLRAAVSAGTEVGKKAK 178
                  56788****************************9999999988866555 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.35
    TIGR02173  71 keknvvlesrlag.Wll 86 
                  +  + vle r++g W++
  MMETSP1061-20121228|14160_1 242 EVPDSVLEERITGrWIH 258
                  23455777777765665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 1561.87
//
Query:       MMETSP1061-20121228|14173_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 548.26
//
Query:       MMETSP1061-20121228|14168_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.28
# Mc/sec: 2932.04
//
Query:       MMETSP1061-20121228|14181_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-51  173.8   3.8    1.1e-51  173.7   2.6    1.0  1  TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family


Domain annotation for each model (and alignments):
>> TIGR01033  TIGR01033: DNA-binding regulatory protein, YebC/PmpR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.7   2.6   2.8e-55   1.1e-51      34     237 ..       1     207 [.       1     208 [. 0.95

  Alignments for each domain:
  == domain 1    score: 173.7 bits;  conditional E-value: 2.8e-55
    TIGR01033  34 vAakeGggdp.esNprLrtaiekAkaanlpkdnieraikkgageadeenyeeitYEgyapgGvavlvealtDNknRtaselrsalnkkggsLgesgsvsylFsrkgvievekeeieeeellealieagaed..ieeedde..ievitepeelekvkeaLekkglkieeaeiklipettveldeeqaekllklidalEdldDvqevyhNl 237
                  +A+k+Gg+   +sN +L  ++++Aka+n+p dni raik++++ a+++++ e t+E+y+ gG  +++++l+DN+nR+ ++++s++nk+ ++++esgsv ++++rkg +ev+   i+ee ll a+iea++ed  +ee d+e    v+ ep++  k+ ++++  g + ++  ++++ +  ve+ +e+ e+++++idalE+ldDv++v hN+
  MMETSP1061-20121228|14181_1   1 MAVKQGGSAStDSNRQLAEVVKQAKANNVPVDNISRAIKRATE-ASTADFAESTFEAYGFGGASLVINVLSDNPNRANADVKSTVNKRNAKIAESGSVLFMYDRKGQVEVDA-VIDEEILLDAAIEADIEDflLEEGDEEgsSVVFVEPSDSGKMFDVIKGLGHENAKMSLRWVSKAPVECSDEDFEHNMQIIDALEELDDVDSVEHNM 207
                  59***9987559******************************9.99*****************************************************************9.59***************943344444488899***************************************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1313.61
//
Query:       MMETSP1061-20121228|14207_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 2014.06
//
Query:       MMETSP1061-20121228|14213_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1528.03
//
Query:       MMETSP1061-20121228|14240_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   11.5   0.5      0.019   11.4   0.3    1.1  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
       0.03   10.6   0.6      0.036   10.4   0.4    1.1  1  TIGR01804 BADH: betaine aldehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.3   9.3e-06     0.019      35      92 ..      62     119 ..      31     125 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.3e-06
    TIGR02299  35 GgaedvdkavkaakkafkkwaelkaaerkklllkladliekhadeiavlesldtGqal 92 
                    a+++  a kaa++a k+  + k ae kk  +k +dl++++ +        dtG + 
  MMETSP1061-20121228|14240_1  62 SAADELTDAQKAAAEAAKERMRQKIAESKKNYRKASDLVKQRKETTDYSCVADTGSPC 119
                  46789999**********************************9999888889999875 PP

>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   1.7e-05     0.036      31      94 ..      61     124 ..      45     126 .] 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.7e-05
    TIGR01804  31 eatredvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlv 94 
                  ++++++   a +aa  a +e    +  e  +  r++++l+++++e        dtG +  e  +
  MMETSP1061-20121228|14240_1  61 ASAADELTDAQKAAAEAAKERMRQKIAESKKNYRKASDLVKQRKETTDYSCVADTGSPCPEEKK 124
                  5567888899999999**************************9999888888999998877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       404  (0.0984885); expected 82.0 (0.02)
Passed bias filter:                      282  (0.068747); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|14290_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-87  291.3   0.0    1.4e-87  291.0   0.0    1.0  1  TIGR00018 panC: pantoate--beta-alanine ligase
      2e-07   28.9   0.0    5.4e-07   27.6   0.0    1.7  2  TIGR00125 cyt_tran_rel: cytidyltransferase-related domain
      0.005   14.7   0.0      0.012   13.5   0.0    1.6  1  TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase


Domain annotation for each model (and alignments):
>> TIGR00018  panC: pantoate--beta-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.0   0.0   1.1e-90   1.4e-87       7     282 ..      17     293 ..      12     294 .. 0.92

  Alignments for each domain:
  == domain 1    score: 291.0 bits;  conditional E-value: 1.1e-90
    TIGR00018   7 ieelreyikqleregktvglvPtmGaLheGhasLidravkendlvvvsifvnPlqfgpneDlekYPrdleeDlklleklkvdvlfaPkvkelypegaeqkttvvvpkalsevLeGasrpghfrGvativtklfnlvkpdvayfGkkDaqqlavieklvkdllldielvsveivreedgLalssrnkYLtaeerkqaeklyraLkaaeea.iraGerdvdavikiakdildtk..slkvdyveladadtLeelsevekks..vviavaayvgdarLiDnlvv 282
                  +++ r ++++l   + +vg+vPtmGaLheGh sL+++a+ +ndlvv sifvnP+qfg +eDl+kYPr+l++D++ll +l+vd lf+P++ ++y ++ ++  +v+ +    +  eG  rpghfrGvativtklfn+++p+ ayfG+kDa q ++i+++v+dl +d+++v  e+vre+dgLa+ssrn YL+ +er  a  + ++L aa++a i++   + +++i i++ +l+++    +++y+++ ++ t++ +s+ ++ +  + i++  +vg++rLiDn+v+
  MMETSP1061-20121228|14290_1  17 VSAYRAFRRSLL-PSLKVGFVPTMGALHEGHLSLVKKAMTQNDLVVASIFVNPTQFGEGEDLDKYPRQLDRDTELLSDLGVDHLFVPNIDDMYSKDFGT--YVDCKS-FDDIPEGIVRPGHFRGVATIVTKLFNIIQPNNAYFGQKDAGQCVLIRRIVEDLDMDVNIVVGETVREHDGLAKSSRNAYLSDIERPAAAIINQSLLAAKDAwIKNPLIESSELIAITRGVLESEplVSEIQYISVESMATMKAVSKPSDCKdgTTISLGCVVGSVRLIDNIVL 293
                  556666666666.7789*****************************************************************************96655..444444.6799********************************************************************************************999983566677899************966679****************98876667******************97 PP

>> TIGR00125  cyt_tran_rel: cytidyltransferase-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0     4e-10   5.4e-07       4      50 ..      35      85 ..      32      95 .. 0.78
   2 ?   -3.1   0.0       1.5   2.1e+03      39      60 ..     220     241 ..     216     245 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 4e-10
    TIGR00125  4 fvGtFdplHlGHlklleeakelfdelivgvgsde....fvnpekgpvtsae 50
                 fv+t+  lH+GHl+l+++a  ++d ++ ++++++    + +  ++ +  ++
  MMETSP1061-20121228|14290_1 35 FVPTMGALHEGHLSLVKKAMTQNDLVVASIFVNPtqfgEGEDLDKYPRQLD 85
                 89****************************999977555555555445555 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 1.5
    TIGR00125  39 vnpekgpvtsaeerlemlkalk 60 
                  ++++k+p++   e +++++ + 
  MMETSP1061-20121228|14290_1 220 DAWIKNPLIESSELIAITRGVL 241
                  6678999999999888887665 PP

>> TIGR01510  coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   8.8e-06     0.012      11      39 ..      42      70 ..      35      98 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 8.8e-06
    TIGR01510 11 vtlGHldiikralklfdevivavainpsK 39
                 ++ GHl ++k+a+++ d v+  +++np+ 
  MMETSP1061-20121228|14290_1 42 LHEGHLSLVKKAMTQNDLVVASIFVNPTQ 70
                 799***********************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.20
# Mc/sec: 1953.44
//
Query:       MMETSP1061-20121228|14330_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.18s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 446.25
//
Query:       MMETSP1061-20121228|14343_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.16s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 284.82
//
Query:       MMETSP1061-20121228|14348_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   14.2   1.8      0.015   13.6   0.0    2.2  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.3      0.27   1.1e+03       9      20 ..      51      62 ..      49      67 .. 0.64
   2 !   13.6   0.0   3.6e-06     0.015       2      29 .]      95     119 ..      95     122 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.27
    TIGR01409  9 aaaaagaaaglg 20
                  +a+ + a+ ++
  MMETSP1061-20121228|14348_1 51 LSAMLTIALLFA 62
                 567777777775 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.6e-06
    TIGR01409   2 sRRdFLkaaaaagaaaglglllpsparA 29 
                  sRRdF+ +++a  +a+ l++    pa A
  MMETSP1061-20121228|14348_1  95 SRRDFMERTCALIVAVPLFS---DPAQA 119
                  9***************9965...55444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1440.40
//
Query:       MMETSP1061-20121228|14356_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 761.94
//
Query:       MMETSP1061-20121228|14362_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    5.3   9.6        1.7    5.3   6.6    1.0  1  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.6   0.00041       1.7     112     160 ..       7      55 ..       2      56 .] 0.87

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00041
    TIGR03794 112 lekvrnfqvrekearekkflkskeaLeetigklreeeaaLsqevakqrq 160
                  +++ ++ ++r+  +re ++lk+kea +e +++l+e++a+  +e+a++++
  MMETSP1061-20121228|14362_1   7 DRRRKEQEARQARVREEEELKRKEAVREEARRLKEARAVAREEEARKKE 55 
                  4555667889999***************************999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 335.97
//
Query:       MMETSP1061-20121228|14372_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-05   21.5   1.3      5e-05   20.1   0.9    1.6  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    0.00048   17.6   0.1    0.00075   17.0   0.1    1.3  1  TIGR01777 yfcH: TIGR01777 family protein
    0.00059   16.6   0.3     0.0013   15.5   0.1    1.6  2  TIGR01179 galE: UDP-glucose 4-epimerase
     0.0025   15.2   0.3     0.0051   14.2   0.2    1.7  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
      0.006   13.5   0.2     0.0096   12.8   0.2    1.4  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
  ------ inclusion threshold ------
      0.028   11.4   0.2       0.04   10.9   0.1    1.2  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.9   7.3e-08     5e-05       2     115 ..      95     198 ..      94     212 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 7.3e-08
    TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykanvegtravleaAleagvervvytssva 115
                  kvlv G++GFvGs vv+ l+++G +v     +t  r    ++  +  +  ++ ++ +++  kGc+a++       + +k  + + +a    t    + A++agver vy s   
  MMETSP1061-20121228|14372_1  95 KVLVLGGSGFVGSRVVENLKSQGVDVIS--TSTNGRD--GTIAFDATKDGIDVAKEIESLCKGCTAVISCIGS--IGTKSDNVV-NA---ATGLAAKGAKNAGVERFVYISVAP 198
                  89*********************88744..4444433..4566677777788889999999***999877654..344433333.22...344455789999999999998655 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.1   1.1e-06   0.00075       1      66 [.      96     162 ..      96     168 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.1e-06
    TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaeeaeee.alegvdavinLaG 66 
                  vl+ Gg+G++G+++ve+l+++g +v+  + + ++ + + + +++ +   +e e   +g++avi   G
  MMETSP1061-20121228|14372_1  96 VLVLGGSGFVGSRVVENLKSQGVDVISTSTNGRDGTIAFDATKDGIDVAKEIEsLCKGCTAVISCIG 162
                  7899**********************99999998888875555444333333326788999997666 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.1   1.8e-06    0.0013       1      27 [.      95     121 ..      95     138 .. 0.91
   2 ?   -3.0   0.0      0.76   5.2e+02     255     277 ..     299     321 ..     284     322 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.8e-06
    TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevv 27 
                  k+Lv Gg+G++Gs vv +l+++g +v+
  MMETSP1061-20121228|14372_1  95 KVLVLGGSGFVGSRVVENLKSQGVDVI 121
                  69*********************9987 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.76
    TIGR01179 255 nlGagqgfsvkevieavkkvsgk 277
                   + a +g  v ev+++ +k+ g+
  MMETSP1061-20121228|14372_1 299 ACNAATGKVVSEVLDTYDKIKGA 321
                  45667888999999999999885 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   7.5e-06    0.0051       2     107 ..      96     196 ..      95     310 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.5e-06
    TIGR03649   2 iLllgGtGkvasriarllaaasvpllvasrssssaaledekavkFdwldedtyenvfssddemekeelisavylvappvldlasllikFidvavkk.gvkrfvllsa 107
                  +L+lgG+G v+sr+++ l++++v+++ +s ++   +++     + d +d    +++ s  ++ +   +is +  + +++ + +++++       k+ gv+rfv++s 
  MMETSP1061-20121228|14372_1  96 VLVLGGSGFVGSRVVENLKSQGVDVISTSTNG--RDGTIAFDATKDGIDVA--KEIESLCKGCTA--VISCIGSIGTKSDNVVNAATGLAAKGAKNaGVERFVYISV 196
                  8*************************999777..33333333333333322..222233444444..6777777777776666666666544444447777777774 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.2   1.4e-05    0.0096       1      28 [.      96     123 ..      96     180 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.4e-05
    TIGR04180   1 vlvtGadGfiGshlvealvekGaevral 28 
                  vlv G  Gf+Gs +ve+l ++G++v + 
  MMETSP1061-20121228|14372_1  96 VLVLGGSGFVGSRVVENLKSQGVDVIST 123
                  79**********************9765 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   5.8e-05      0.04       1      26 [.      96     121 ..      96     165 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 5.8e-05
    TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdi 26 
                  ++v Gg+Gf+Gs +v +l+++g + i
  MMETSP1061-20121228|14372_1  96 VLVLGGSGFVGSRVVENLKSQGVDVI 121
                  6899***************9996554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1474.64
//
Query:       MMETSP1061-20121228|14376_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00024   18.4   3.8    0.00036   17.9   2.6    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
  ------ inclusion threshold ------
        4.3    4.7  10.4        4.1    4.8   3.5    2.4  2  TIGR02642 phage_xxxx: uncharacterized phage protein


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   2.6   1.7e-07   0.00036      87     200 ..      36     146 ..      15     151 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.7e-07
    TIGR02349  87 sefgdigdifeeffggggg..sgrr....rskarrgedlevelelsleeavkGvekeielerkekCetCkGsGakkgsklktCktCgGtGqvrkqqg..tllgffqsqqtCseCkGeGkiik 200
                  ++fg  ++ +ee+ ++ ++     +    r+ +r+ e  +++le++ + a   v+k+        C++C GsG+        C+ C+GtG +    +  +++      + C++C G+G+i++
  MMETSP1061-20121228|14376_1  36 QNFGPAEEEYEEINEKLNEleP--KevyvRQVPRSIEKSRTHLEMNWQIADCAVDKDT---CADICSECAGSGKV------PCQFCNGTGMIAFLDEfrSCILCKDGLTDCKSCVGTGSIAS 146
                  4566666666666555544321..2234567777777777777777766666666654...4567*******987......6********99765540044555555699********9975 PP

>> TIGR02642  phage_xxxx: uncharacterized phage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   3.5     0.002       4.1     170     209 ..      82     116 ..      43     131 .. 0.66
   2 ?    2.3   0.5     0.012        24     198     210 ..     133     145 ..     123     151 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.002
    TIGR02642 170 lrdyavakaaesqkCPrCrgtgltlrrqeeCdkCaGtGrl 209
                  + d av k +    C  C g+g+ +     C+ C+GtG +
  MMETSP1061-20121228|14376_1  82 IADCAVDKDTCADICSECAGSGKVP-----CQFCNGTGMI 116
                  5666666777777777777777664.....7777777766 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.012
    TIGR02642 198 eeCdkCaGtGrlv 210
                    C+ C GtG + 
  MMETSP1061-20121228|14376_1 133 TDCKSCVGTGSIA 145
                  68********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 883.75
//
Query:       MMETSP1061-20121228|14389_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-25   84.9   0.0    1.1e-24   84.7   0.0    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB
    1.1e-24   84.6   0.1    1.1e-24   84.5   0.1    1.0  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
    5.8e-19   65.6   0.0      6e-19   65.5   0.0    1.0  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA


Domain annotation for each model (and alignments):
>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   0.0   7.7e-28   1.1e-24     268     318 ..       4      54 ..       2      55 .] 0.97

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 7.7e-28
    TIGR03346 268 iilfidelhtlvGaGkaeGaldagnllkPalarGelhciGattldeyrkyi 318
                   ilfide+h lvGaG+aeG +da+nllkPalar +l+ +Gatt+ eyrkyi
  MMETSP1061-20121228|14389_1   4 TILFIDEIHNLVGAGAAEGGMDAANLLKPALARSQLQLVGATTIAEYRKYI 54 
                  59************************************************9 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.1   8.3e-28   1.1e-24     281     332 ..       3      54 ..       1      55 [] 0.97

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 8.3e-28
    TIGR03345 281 piilFiDeaHtliGaGgqaGqgDaanllkPaLARGelrtiaAttWaeykkyi 332
                  p ilFiDe+H l+GaG+++G+ DaanllkPaLAR +l+ ++Att aey+kyi
  MMETSP1061-20121228|14389_1   3 PTILFIDEIHNLVGAGAAEGGMDAANLLKPALARSQLQLVGATTIAEYRKYI 54 
                  99*************************************************8 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.5   0.0   4.4e-22     6e-19     278     330 ..       3      54 ..       1      55 [] 0.94

  Alignments for each domain:
  == domain 1    score: 65.5 bits;  conditional E-value: 4.4e-22
    TIGR02639 278 dailfiDeihtivgagatsggsldasnlLkPalasGkirciGsttyeeykkif 330
                   +ilfiDeih +vgaga+ gg +da+nlLkPala  +++++G+tt  ey+k++
  MMETSP1061-20121228|14389_1   3 PTILFIDEIHNLVGAGAAEGG-MDAANLLKPALARSQLQLVGATTIAEYRKYI 54 
                  57***************9988.****************************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|14391_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1262.50
//
Query:       MMETSP1061-20121228|14388_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-31  107.1   0.0    3.2e-31  106.5   0.0    1.2  1  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN
    7.3e-25   85.8   0.0    1.8e-24   84.6   0.0    1.6  2  TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
      2e-07   28.0   1.1      0.004   13.8   0.1    3.1  3  TIGR01330 bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase


Domain annotation for each model (and alignments):
>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5   0.0   2.3e-34   3.2e-31       2     227 ..     102     352 ..     101     369 .. 0.79

  Alignments for each domain:
  == domain 1    score: 106.5 bits;  conditional E-value: 2.3e-34
    TIGR02067   2 lalalelaeaageailkyfrasdlkvdkksdk.........tpVteADraaEeaireliaakfPddgilGEEfg....eeeedae.yvWvlDPiDGTksFirGvP.vwgtLiaLlekgkpvlGvisqPalgerfvaakgegallngge......relrvsevaklsdAvlvttspkaledeeereafeklrrkarltr.yggdcyayalvAsGrvdl....vveaelspyDiaalipiieeAggvitdwkGk 227
                  l+la +la+ ag+++++y +a+ +  +++ d          ++ t+ D + E+++ + i++ fPd+ i+GEE        e d +  +W++DPiDGT +F +G+  +  + i+   +g+pv+Gv+++P ++e++v++ g ga++ng+       r++++ + + + + + +t +p++l+  +  ++ + + + ++ +r +g+ c   + vAsGr d+    +  ++ +p+D+aa  +i  eAg ++ +++ +
  MMETSP1061-20121228|14388_1 102 LKLAVQLAREAGSNMVEYMEAKGTDAESSLDLgietksgfaDICTKVDVENERLVIDGIRSVFPDHQIIGEESVgtgaLPELDPDvPTWIIDPIDGTTNFSSGLHsLTCVSIGFCVGGRPVVGVVYAPGTNELYVGVDGCGAYRNGRRlwqdpeRSIKTISGSVVCNEMGYTRDPEHLAILQG-AQTRVMLEGCKAMRqIGSGCLDLCFVASGRLDVvyagLCTEGWKPWDYAASLVICREAGCTMESIEAQ 352
                  68999***************998888877776788889999*******************************8623232233333159***************96266677**********************************96665444445555555555555555666655554444.4555555666666615667**************5555567889****************999887655 PP

>> TIGR01331  bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.3       1.4   1.9e+03     173     194 ..      42      63 ..      19      67 .. 0.61
   2 !   84.6   0.0   1.3e-27   1.8e-24       7     232 ..     107     354 ..     102     360 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 1.4
    TIGR01331 173 elgaelvvsvgsslkiclvAeg 194
                  +l+ +++ s +ss  +++vA +
  MMETSP1061-20121228|14388_1  42 ALALAMTSSSSSSSTSTVVAAA 63 
                  5666666777777777777765 PP

  == domain 2    score: 84.6 bits;  conditional E-value: 1.3e-27
    TIGR01331   7 kiakeAgeeilevyq.kela........veekeDesP.vteADlaaeklilekLraltPdiPvlsEEeaeiglker.etwkrfwLvDPlDGtkeFikrngeFt.vniaLveegkPvlGvvyaPvlgvlyfaeagkaakkevdd..qalkkkikvreadsealavvisrshaeekvkelle........elgaelvvsvgsslkiclvAegsadiYpRlgpts...eWDtaAgeavlkeaGgeildldgkpl 232
                  ++a+eAg++++e  + k+++        +e+k+  +   t+ D++ e+l+++++r ++Pd  ++ EE   +g  ++ +     w++DP+DGt +F       t v i+    g+Pv+GvvyaP +++ly + +g +a+++     q  ++ ik++  + + +   ++ + ++++  ++l+        e  ++++  ++  l +c vA+g  d+     +t+    WD aA+ ++ +eaG+++ +++ + +
  MMETSP1061-20121228|14388_1 107 QLAREAGSNMVEYMEaKGTDaessldlgIETKSGFADiCTKVDVENERLVIDGIRSVFPDHQIIGEESVGTGALPElDPDVPTWIIDPIDGTTNFSSGLHSLTcVSIGFCVGGRPVVGVVYAPGTNELYVGVDGCGAYRNGRRlwQDPERSIKTI--SGSVVCNEMGYT-RDPEHLAILQgaqtrvmlEGCKAMRQIGSGCLDLCFVASGRLDVVYAGLCTEgwkPWDYAASLVICREAGCTMESIEAQTI 354
                  566666666666655443330011111134455444315999*************************9998877662556679**************999987589**********************************999333334444433..443333333433.3344444444443444335556666777778************86555566412268****************99998865 PP

>> TIGR01330  bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.2   0.0    0.0025       3.4       2      77 ..      98     176 ..      97     186 .. 0.74
   2 !   13.8   0.1   2.9e-06     0.004     136     174 ..     189     229 ..     184     244 .. 0.85
   3 !    7.2   0.0    0.0003      0.41     283     334 ..     319     367 ..     301     382 .. 0.74

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0025
    TIGR01330   2 lekeldvavkavrka.slLtkkvqeklikekaa...dvkskdDksPv.tvaDygaqaivilvlkeefpddklsivaeedse 77 
                  + +el++av+ +r a s +++ +  k    +++   ++ +k+  + + t  D     +vi  ++++fpd++  i++ee+ +
  MMETSP1061-20121228|14388_1  98 YGRELKLAVQLAREAgSNMVEYMEAKGTDAESSldlGIETKSGFADIcTKVDVENERLVIDGIRSVFPDHQ--IIGEESVG 176
                  568999999999888345556665555555433222577888766653778999*****************..*****965 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 2.9e-06
    TIGR01330 136 hWvLDPiDGtkGflrGdq..yavaLaLienGkvvlgvlgCP 174
                   W++DPiDGt  f  G      v++++ + G++v+gv+  P
  MMETSP1061-20121228|14388_1 189 TWIIDPIDGTTNFSSGLHslTCVSIGFCVGGRPVVGVVYAP 229
                  6***************76225678899**********9888 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0003
    TIGR01330 283 ylrlptklykekiWDhaaGaviveeaGGvvtDaagkpLDfskGrtLeldkGv 334
                  y  l t+ +  k WD+aa  vi +eaG  +  +  + +D   G  L   + +
  MMETSP1061-20121228|14388_1 319 YAGLCTEGW--KPWDYAASLVICREAGCTMESIEAQTIDGCDGFDLYS-TSI 367
                  666666666..67**************999999999999998887765.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.17s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 1592.12
//
Query:       MMETSP1061-20121228|14392_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.36
# Mc/sec: 1008.25
//
Query:       MMETSP1061-20121228|14387_1  [L=1539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.15s 00:00:00.74 Elapsed: 00:00:00.51
# Mc/sec: 3982.97
//
Query:       MMETSP1061-20121228|14393_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 2527.35
//
Query:       MMETSP1061-20121228|14390_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1916.12
//
Query:       MMETSP1061-20121228|14396_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-31  107.0   0.0    1.9e-31  106.2   0.0    1.4  1  TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein
    1.8e-31  106.4   0.0    3.2e-31  105.5   0.0    1.4  1  TIGR01997 sufA_proteo: FeS assembly scaffold SufA
    5.6e-26   88.7   0.5    1.8e-25   87.1   0.0    1.8  2  TIGR02011 IscA: iron-sulfur cluster assembly protein IscA
    2.8e-05   21.8   0.0    4.4e-05   21.2   0.0    1.2  1  TIGR03341 YhgI_GntY: IscR-regulated protein YhgI
     0.0038   14.3   2.6     0.0064   13.5   1.5    1.6  2  TIGR00732 dprA: DNA protecting protein DprA


Domain annotation for each model (and alignments):
>> TIGR00049  TIGR00049: iron-sulfur cluster assembly accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.2   0.0   2.3e-34   1.9e-31       1     106 []     125     231 .]     125     231 .] 0.97

  Alignments for each domain:
  == domain 1    score: 106.2 bits;  conditional E-value: 2.3e-34
    TIGR00049   1 itltdkaakkikelleeekee.nkglrvgvkegGCsGlkykleleeekeedDevvekdgvkvvvdskslellegleidyveellgsgFkfsNPnakssCgCgkSFsv 106
                  i+lt++ a++ik++l++e+ + + g+r+gvk++GC+Gl+y+l+++ ek ++D+ ++++gvk++v++++l  + g+++d+ e+ l+s+F+f+NPn+k++CgCg+SF+v
  MMETSP1061-20121228|14396_1 125 IELTERGAERIKQILQGENAKgAIGIRLGVKRRGCNGLSYTLNYAFEKPKKDMEMQAHGVKIFVEPMALFNVVGTVMDWEETELSSEFTFKNPNSKGECGCGESFTV 231
                  79**************998886899********************************************************************************85 PP

>> TIGR01997  sufA_proteo: FeS assembly scaffold SufA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.5   0.0   3.9e-34   3.2e-31       3     107 .]     125     231 .]     123     231 .] 0.95

  Alignments for each domain:
  == domain 1    score: 105.5 bits;  conditional E-value: 3.9e-34
    TIGR01997   3 leltdaaatrvrelvk..kreeavgirlsvkktGcaGleyalelvsepkeddvllekdGakvfvapeallflkGtevdfvkktlrqglkfnnPnatsacGcGesvel 107
                  +elt+  a r++++++  ++++a girl+vk+ Gc Gl+y+l+   e  ++d+ ++++G+k+fv+p al  + Gt++d+++++l ++++f+nPn++++cGcGes+ +
  MMETSP1061-20121228|14396_1 125 IELTERGAERIKQILQgeNAKGAIGIRLGVKRRGCNGLSYTLNYAFEKPKKDMEMQAHGVKIFVEPMALFNVVGTVMDWEETELSSEFTFKNPNSKGECGCGESFTV 231
                  89*************7225599**********************************************************************************975 PP

>> TIGR02011  IscA: iron-sulfur cluster assembly protein IscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.44   3.6e+02       8      38 ..      45      74 ..      39      79 .. 0.75
   2 !   87.1   0.0   2.1e-28   1.8e-25       1     105 []     125     231 .]     125     231 .] 0.95

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.44
    TIGR02011  8 akrvnsflanrgkglglrlgvktsgcsgmay 38
                 ++r+++  ++r   +g r+   ts  +g+a 
  MMETSP1061-20121228|14396_1 45 TRRIQT-ATQRSGAFGGRVTPTTSQTAGLAG 74
                 445544.5678889999**999999999985 PP

  == domain 2    score: 87.1 bits;  conditional E-value: 2.1e-28
    TIGR02011   1 itlteaaakrvnsfla.nrgkg.lglrlgvktsgcsgmayvlefvdeaddddlvfedkgvkividakslvyldgiqldfvkeglnegfkfenpnvkdecgcgesfhv 105
                  i lte  a+r+++ l  +  kg +g+rlgvk  gc g++y+l++  e+ ++d+ ++ +gvki++++ +l  + g+ +d+    l   f f+npn k+ecgcgesf+v
  MMETSP1061-20121228|14396_1 125 IELTERGAERIKQILQgENAKGaIGIRLGVKRRGCNGLSYTLNYAFEKPKKDMEMQAHGVKIFVEPMALFNVVGTVMDWEETELSSEFTFKNPNSKGECGCGESFTV 231
                  6799*********99635667659*********************************************************************************97 PP

>> TIGR03341  YhgI_GntY: IscR-regulated protein YhgI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   5.3e-08   4.4e-05       1      96 [.     125     220 ..     125     224 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 5.3e-08
    TIGR03341   1 ititeaaqeylakllekqe..egikirvfvvnPGtpkaecgvayckpdeveeediklefdefsayvdaksvpfledaeidfvtdklGgqltlkaPnak 96 
                  i++te   e ++++l+  +    i+ir+ v++ G +    ++ y+ +  + ++d++++ ++++++v+  ++  +  +++d+++ +l + +t+k Pn+k
  MMETSP1061-20121228|14396_1 125 IELTERGAERIKQILQGENakGAIGIRLGVKRRGCNGLSYTLNYAFE--KPKKDMEMQAHGVKIFVEPMALFNVVGTVMDWEETELSSEFTFKNPNSK 220
                  6788899999999998777535699*********9988888888764..5689*******************************************98 PP

>> TIGR00732  dprA: DNA protecting protein DprA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   1.5   7.8e-06    0.0064     141     180 ..       3      42 ..       1      58 [. 0.91
   2 ?   -3.1   0.0      0.93   7.6e+02     194     211 ..     119     136 ..     101     140 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.8e-06
    TIGR00732 141 akyrFpkRNRlisglskavlvveAklkSGalitAelalel 180
                  ++ +F + NR++++++++ + + A+ k Ga   A+ a+e 
  MMETSP1061-20121228|14396_1   3 SQSSFVAANRMVAAVARTRVSTLATAKAGAQAIARSAHES 42 
                  5779*********************************985 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.93
    TIGR00732 194 eeseGclkLieeGaelvt 211
                   e++ +++L e+Gae ++
  MMETSP1061-20121228|14396_1 119 LETKDPIELTERGAERIK 136
                  345556667777776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1172.67
//
Query:       MMETSP1061-20121228|14394_1  [L=758]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-17   60.1   0.0    1.2e-16   58.7   0.0    1.7  2  TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD


Domain annotation for each model (and alignments):
>> TIGR00326  eubact_ribD: riboflavin biosynthesis protein RibD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   2.9e-20   1.2e-16       1     141 [.     147     317 ..     147     324 .. 0.85
   2 ?   -3.0   0.0      0.17   7.2e+02     240     282 ..     592     635 ..     575     662 .. 0.72

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 2.9e-20
    TIGR00326   1 mkraldlakk...aqftTepNPaVGaVivk.ngeivgegahekaGeaHaEvvAlaqAgeka........................kgatlyVtLEP.CsHqGrT.pPCaealieaGikkvvvsmkDpnplvaGkGiell.kkaGievevg.ilkeeaeklnkaflkrkktglp 141
                  m++a++ ak    +    +p P+VG+ ++  +g+++g g         a   Al+q g  +                          +tlyVtLEP  s  G T pP ++++  +G+ +vv++  Dp p  aGkG + l ++ G++v++g il++++++l k++  r + +l+
  MMETSP1061-20121228|14394_1 147 MRLAIEYAKSqtmGSNSAYPMPTVGCALIAsDGRVLGLGCSSYK--KDAIQDALEQTGLDVmplrewcvtwpaqsaacwklrddlASSTLYVTLEPlASRRGETlPPMTQLIELSGVSRVVIGTPDPVPERAGKGSQSLhRQSGLDVSMGrILEDDCRELVKPYTDRANSKLQ 317
                  6777777775111445789*******99998*******998764..4455667777777779*********************9999*********55789**978888888899*********************9994567*****96599************99887765 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.17
    TIGR00326 240 adkkeflealeveilvlekltlkevlkqlakre.iksvlvEgGe 282
                   ++k+ l+++ v + +l+  +  +v+++l+kr+   s+++ +G 
  MMETSP1061-20121228|14394_1 592 LERKQKLQSFGVVVETLNGRKPIDVMEHLGKRNgYGSIVWRAGC 635
                  45677888888888888888899999999998625677777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (758 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       315  (0.0767918); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.32
# Mc/sec: 3126.49
//
Query:       MMETSP1061-20121228|14400_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|14397_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   10.2   0.0       0.05    9.8   0.0    1.2  1  TIGR00575 dnlj: DNA ligase, NAD-dependent


Domain annotation for each model (and alignments):
>> TIGR00575  dnlj: DNA ligase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   1.2e-05      0.05     596     650 ..      58     111 ..      18     113 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 1.2e-05
    TIGR00575 596 leklsrkeakeklealggkvassVskktdyvvagekagsKlkkAkelgikilsee 650
                  l++l +++ ++k  + g  va s  k+t++++ ge++   ++kA+el ik ls+ 
  MMETSP1061-20121228|14397_1  58 LQELEKDRLEKKAAEEGQPVAPSNEKTTKFMISGEAPVL-MSKACELMIKDLSFR 111
                  689999********************************9.*********988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1542.91
//
Query:       MMETSP1061-20121228|14399_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-13   46.4   0.0     0.0022   15.0   0.0    3.3  3  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family
    9.1e-09   32.7   0.1    3.6e-07   27.4   0.1    2.6  1  TIGR03548 mutarot_permut: cyclically-permuted mutatrotase family protein


Domain annotation for each model (and alignments):
>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.5e-06    0.0031     252     330 ..      42     120 ..      10     127 .. 0.79
   2 !   13.2   0.0   3.8e-06    0.0078      82     132 ..     126     178 ..     120     184 .. 0.84
   3 !   15.0   0.0   1.1e-06    0.0022     291     333 ..     245     287 ..     228     295 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.5e-06
    TIGR03547 252 fagksdgkllvaGGAnFkGakenykkGklyaHeGlekayskevyalkekkWkvvgklpqglaYGvsvsaeekllliGGe 330
                   ++ sd  + +aGG n +  +    +  l     l  +ys++++a++ k++++++++p++    ++vsa +kl liGG 
  MMETSP1061-20121228|14399_1  42 ASSSSDAAIYIAGGCNSPNGNTYVDANGLELDYFLCESYSDQLFAFDTKSFETKAQMPRPRYRHAAVSATGKLWLIGGR 120
                  4667788899999999886666665555556667999*****************************************6 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 3.8e-06
    TIGR03547  82 qvlddvykydpkknsWekletrsPvgllGasav..eleegkililGGvnkeiF 132
                   ++ +v +ydp++++W+ + t +   l+   ++  + ++++i+++GG+n ++F
  MMETSP1061-20121228|14399_1 126 SIIAEVDVYDPSTDTWSTVGTLPEAYLTSDNGAfaNADGSTIYVVGGYNPQYF 178
                  57788999************999999987665422478899*********999 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 1.1e-06
    TIGR03547 291 skevyalkekkWkvvgklpqglaYGvsvsaeekllliGGeksd 333
                  s evy l++++W+ +g+l ++ + G+ v+a+++++ iGGe ++
  MMETSP1061-20121228|14399_1 245 SAEVYDLENDTWTSSGNLLKARGDGALVEASGTIFSIGGEVNH 287
                  679*************************************765 PP

>> TIGR03548  mutarot_permut: cyclically-permuted mutatrotase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.1   1.8e-10   3.6e-07     123     314 ..      47     286 ..       9     289 .. 0.75

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.8e-10
    TIGR03548 123 dgklyvalgna..ngkp.................snklyllnletkeleelpdfPgeaRvqpvavalknelYvfgggd...aeaytdgyayslkknkWekvaavlsdeepisllGaasvklneskllviGGvnkkvfe.dAvkrleqlkde..............................slksekkeYllkeae.wyrfNdkvliydvrsnkwksigeseavAraGaallltgdnlfvinGEik 314
                  d  +y+a+g    ng+                  s++l+ ++  tk +e ++++P ++R    av+ +++l+++gg++   +++  ++  y++++++W +v +    e  ++   +a  +   s++ v+GG+n + f  dA+ +   ++++                              s  +  k Y+  +   + +  ++  +yd+++++w+s g+    Ar   al+    ++f+i+GE++
  MMETSP1061-20121228|14399_1  47 DAAIYIAGGCNspNGNTyvdangleldyflcesySDQLFAFD--TKSFETKAQMP-RPRYRHAAVSATGKLWLIGGRSipeDSIIAEVDVYDPSTDTWSTVGT--LPEAYLTSDNGAFANADGSTIYVVGGYNPQYFApDALATTFSFQTAaalasssasaplaitrradlksqrgdihavSSGDGTKAYVAGGFSgMCQPLTSAEVYDLENDTWTSSGNL-LKARGDGALVEASGTIFSIGGEVN 286
                  666776666421133335666666666776664455555555..66666777778.7999999************875333678889999***********99..4455555566666788899*************76999999988888899******************9999999885555566677666541556678999************987.5789888999999*********85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.36
# Mc/sec: 1598.53
//
Query:       MMETSP1061-20121228|14398_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.36
# Mc/sec: 1957.84
//
Query:       MMETSP1061-20121228|14401_1  [L=688]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (688 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 2929.31
//
Query:       MMETSP1061-20121228|14403_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 854.46
//
Query:       MMETSP1061-20121228|14404_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 2418.04
//
Query:       MMETSP1061-20121228|14406_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 1192.79
//
Query:       MMETSP1061-20121228|14408_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-31  105.7   0.0    6.1e-31  105.4   0.0    1.1  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    2.7e-29  100.4   0.1    3.6e-29  100.0   0.0    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.1e-28   97.2   0.1    2.5e-28   97.0   0.0    1.0  1  TIGR02415 23BDH: acetoin reductases
    3.6e-25   86.7   0.3    7.3e-25   85.7   0.2    1.5  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    9.7e-25   84.8   0.0    1.2e-24   84.5   0.0    1.0  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    4.4e-22   76.7   0.3    5.4e-22   76.5   0.2    1.1  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.1e-21   75.2   1.0    1.3e-21   74.9   0.7    1.0  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    3.4e-17   60.6   0.1    3.9e-17   60.4   0.1    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    7.7e-16   56.0   0.5      1e-15   55.6   0.3    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.2e-10   38.9   0.1    1.5e-10   38.6   0.1    1.1  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
      5e-07   27.3   0.1    8.2e-06   23.4   0.1    2.0  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    0.00029   18.2   0.1      0.001   16.3   0.1    1.9  1  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0012   15.9   0.2      0.042   10.8   0.1    2.1  2  TIGR02685 pter_reduc_Leis: pteridine reductase


Domain annotation for each model (and alignments):
>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.4   0.0   1.9e-33   6.1e-31       2     202 ..      18     226 ..      17     263 .. 0.87

  Alignments for each domain:
  == domain 1    score: 105.4 bits;  conditional E-value: 1.9e-33
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle....eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaef..gsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvr.tpLvekqiadqa.ktrgis 202
                  +v+ + Ga+sGig+ ia+ l + Ga+v +   +    ee a+a + +  ++ g++l ++ dvt+ e++++l +++ +++  +s+d ++   G+ + +++ +  ++++++ i+vn  ++   + a++p+m +++ G+ii i+s  g + ++  + Y a+K  +  lt v+  E   tg+t +++ Pg v+ t L+ k  +++a  + g++
  MMETSP1061-20121228|14408_1  18 QVICLIGASSGIGASIAEGLFRSGANVCIGARRlgklEEVAQACKDKYPDSEGNILPIQCDVTSRESVQNLCDKACEHYscASVDAMICCSGVMFWTKMKNVMMDQWDQTIDVNCRGPTNCMGAVIPKMIEAKKGKIITISSDAGVRDFPNLAVYCASKRFVETLTEVTRRELVGTGVTLHTVQPGDVKgTELIMKNTDNEAaDAFGVA 226
                  789999***********************98886677788888888888999**********************999873368999******************************************************************************************************879999998876551344554 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.0   0.0   1.1e-31   3.6e-29       4     183 ..      23     207 ..      20     255 .. 0.87

  Alignments for each domain:
  == domain 1    score: 100.0 bits;  conditional E-value: 1.1e-31
    TIGR01830   4 tGasrgiGkaiakklakegakvviters...keekaeelaeelkeagvkaaavkldvsdeeevkelveeveeelg..eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfiet 183
                   Gas giG++ia+ l ++ga+v+i  r+    ee a++++++  ++ ++ + +++dv+++e+v++l++++ e+++  ++d +++  G+   + + ++  ++wd+ i+vn +g  n++ av+ kmi++++G+ii+iss +g+   ++ a Y+asK  + +lt+ + +El   ++t+ +v PG ++ 
  MMETSP1061-20121228|14408_1  23 IGASSGIGASIAEGLFRSGANVCIGARRlgkLEEVAQACKDKYPDSEGNILPIQCDVTSRESVQNLCDKACEHYScaSVDAMICCSGVMFWTKMKNVMMDQWDQTIDVNCRGPTNCMGAVIPKMIEAKKGKIITISSDAGVRDFPNLAVYCASKRFVETLTEVTRRELVGTGVTLHTVQPGDVKG 207
                  69**********************97642214666777778888889999*********************9986559***********9999999999**********************************************************************************8874 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.0   0.0   7.8e-31   2.5e-28       4     230 ..      21     251 ..      18     269 .. 0.90

  Alignments for each domain:
  == domain 1    score: 97.0 bits;  conditional E-value: 7.8e-31
    TIGR02415   4 lvtGaaqGiGkaiaerLakdGfavavadln....eetaketakelkekgtkavavkldvsdkseveeaveqavekl..GeldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivk.te.mreeideklaelagkeigekleefsseiklGresePedvaelvs 230
                   + Ga+ GiG +iae L + G +v +   +    ee a++ + +  +++++ + ++ dv+++++v+++ ++a e++   ++d ++  +Gv + t ++++  ++ ++  +vn  g    + a   k+ +  +kGkii  +s agv+ +p+l++y+++k  v +lt +  +eL   g+t+ +  PG vk te ++++ d++ a++ g  ig+ + e  ++ +l     Pedva+ v 
  MMETSP1061-20121228|14408_1  21 CLIGASSGIGASIAEGLFRSGANVCIGARRlgklEEVAQACKDKYPDSEGNILPIQCDVTSRESVQNLCDKACEHYscASVDAMICCSGVMFWTKMKNVMMDQWDQTIDVNCRGPTNCMGAVIPKMIEA-KKGKIITISSDAGVRDFPNLAVYCASKRFVETLTEVTRRELVGTGVTLHTVQPGDVKgTElIMKNTDNEAADAFGVAIGQPVGEGFKREQL---LDPEDVANAVL 251
                  5679**********************9877667788999999999999*************************9983357999******************************************9986.58****************************************************997466357889999999999****999888777766...89*****9873 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   0.2   2.3e-27   7.3e-25      67     244 ..      72     252 ..      15     267 .. 0.84

  Alignments for each domain:
  == domain 1    score: 85.7 bits;  conditional E-value: 2.3e-27
    TIGR03971  67 vlarkadvrkleelravveegveef..GrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvd.tamiepeamrelfakreeaaraflpalpvs......glvepedvadvvaw 244
                  +l  ++dv + e +++  +++ e++    +d ++  +Gv+ ++++ ++  +qWd+++dvn +G  +++ av+P++ie+k  G ii +ss ag++ +p+la y+a+k  + +lt+   +el   g+ + +++P  v+ t++i +++ +e+      a+ +      v        l++pedva++v+ 
  MMETSP1061-20121228|14408_1  72 ILPIQCDVTSRESVQNLCDKACEHYscASVDAMICCSGVMFWTKMKNVMMDQWDQTIDVNCRGPTNCMGAVIPKMIEAK-KGKIITISSDAGVRDFPNLAVYCASKRFVETLTEVTRRELVGTGVTLHTVQPGDVKgTELIMKNTDNEAADAFGVAIGQP-----VGegfkreQLLDPEDVANAVLA 252
                  56678999999***********99833579*************************************************.689****************************************************8567777655555555555444444.....3333334489********9974 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.5   0.0     4e-27   1.2e-24     412     653 ..      15     255 ..      10     268 .. 0.90

  Alignments for each domain:
  == domain 1    score: 84.5 bits;  conditional E-value: 4e-27
    TIGR02632 412 larrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGa..dkavalkldvtdeeavkaafaevalayG..GvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadk.leefykkrsllkrevlpediaeavfllas 653
                  l+++v+ ++G++sGiG  +a  l   Ga v +      ++e+va++ +dk+ +  ++ + ++ dvt++e+v++  ++++  y    vd+++  +G++  +++++ + ++Wd ++d++ +G        +  + + +  g+++ i+s  +v   +n   y+a+k     l  +   el  +g+ + tv+P   ++G+++  ++  ++ a a+g++  + ++e +k+  ll     ped+a+av+++++
  MMETSP1061-20121228|14408_1  15 LTNQVICLIGASSGIGASIAEGLFRSGANVCIGARRLGKLEEVAQACKDKYPDseGNILPIQCDVTSRESVQNLCDKACEHYScaSVDAMICCSGVMFWTKMKNVMMDQWDQTIDVNCRGPTNCMGAVIPKMIE-AKKGKIITISSDAGVRDFPNLAVYCASKRFVETLTEVTRRELVGTGVTLHTVQPGD-VKGTELIMKNTDNEAADAFGVAIGQpVGEGFKREQLLD----PEDVANAVLAILT 255
                  789************************************************76115567799*****************9996337**********************************98887777776665.56789*************************************************76.69*******************97543888888888875....9*******98865 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.5   0.2   1.7e-24   5.4e-22       3     194 ..      20     217 ..      18     256 .. 0.86

  Alignments for each domain:
  == domain 1    score: 76.5 bits;  conditional E-value: 1.7e-24
    TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvap...neerakewlqekevegfdvavvkadvssfeeakaavakveae..lGpvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyia.temvkavred 194
                    + G++ GiG++i++ l + G +v  + +     ee a++++++   ++ ++  ++ dv+s e+ ++  +k  ++    +vd ++ ++G+   + +k +  +qW++ id+n  +  n    vi +m+e + G+ii iss  G++     a y a+k  +  +t    +e   +gvt+ ++ PG ++ te++++  ++
  MMETSP1061-20121228|14408_1  20 ICLIGASSGIGASIAEGLFRSGANVCIGARRlgkLEEVAQACKDKYPDSEGNILPIQCDVTSRESVQNLCDKACEHysCASVDAMICCSGVMFWTKMKNVMMDQWDQTIDVNCRGPTNCMGAVIPKMIEAKKGKIITISSDAGVRDFPNLAVYCASKRFVETLTEVTRRELVGTGVTLHTVQPGDVKgTELIMKNTDN 217
                  5678********************987665433467889999999999999*********************988622579*******************************************************************************************************99648888765544 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.7   4.3e-24   1.3e-21       2     226 ..      16     250 ..      15     258 .. 0.81

  Alignments for each domain:
  == domain 1    score: 74.9 bits;  conditional E-value: 4.3e-24
    TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaair....ekggkaeavavditdrasvdaavaaa..eealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraiplg....rlgkpddlagai 226
                   ++v+ + g + gig++i   + + ga+v++    +   e+va+a +    ++ g+   +++d+t+r+sv+     a  + +   vd ++  +g     ++ +    +w++ i +n  g      av++ m+e k+g+i+ i+sda+       avy+a k  + +++    rel   g+t+  v pg  + + l    ++ e ++ +  a+ + +  g    +l +p+d+a a+
  MMETSP1061-20121228|14408_1  16 TNQVICLIGASSGIGASIAEGLFRSGANVCIGARRLGKLEEVAQACKdkypDSEGNILPIQCDVTSRESVQNLCDKAceHYSCASVDAMICCSGVMFWTKMKNVMMDQWDQTIDVNCRGPTNCMGAVIPKMIEAKKGKIITISSDAGVRDFPNLAVYCASKRFVETLTEVTRRELVGTGVTLHTVQPGDVKGTELIMKNTDNEAADAFGVAIGQPVGEGfkreQLLDPEDVANAV 250
                  67899999**********************987777666666666651111568999*************987755411557789*********999999999999**********************************************************************************98866554445555556666666655554332222455666666665 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.4   0.1   1.2e-19   3.9e-17       3     190 ..      15     209 ..      13     250 .. 0.86

  Alignments for each domain:
  == domain 1    score: 60.4 bits;  conditional E-value: 1.2e-19
    TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGadi.vgvg.iselsetqekvea....lGrkflslkadladeeaakalvdeaveeag..kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnn 190
                  l  +v+ + Ga++G+G +ia gl ++Ga++ +g+    +l+e +++ ++       ++l ++ d+++ e++++l d+a+e+     +d ++  +G++   +  ++   +wd+ ++vn +       av  k+++   kgkii i+s    +   +++ y ask+ v  lt +   e+  +g+ + ++ PG ++  +
  MMETSP1061-20121228|14408_1  15 LTNQVICLIGASSGIGASIAEGLFRSGANVcIGARrLGKLEEVAQACKDkypdSEGNILPIQCDVTSRESVQNLCDKACEHYScaSVDAMICCSGVMFWTKMKNVMMDQWDQTIDVNCRGPTNCMGAVIPKMIEAK-KGKIITISSDAGVRDFPNLAVYCASKRFVETLTEVTRRELVGTGVTLHTVQPGDVKGTE 209
                  567889999*******************98455553346677666655411115678899********************876559**********************************9999999999999876.9********999999999***********************************987543 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.3   3.3e-18     1e-15       3     190 ..      22     214 ..      20     232 .. 0.86

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 3.3e-18
    TIGR01831   3 vtgasrgigraialklaadgfeiavhyrsd...radaeesvaairaqggnarllkfdvadrvavrevleadiaehg..ayygvvlnagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglid.temvaev 190
                  + gas gig +ia  l  +g ++++  r+    +  a+++ ++     gn   ++ dv+ r++v+++ ++  ++    +   ++ ++g+   + +  +  ++wd  i+ n  g  n +  ++  mi+a+k g+iit++s +gv        y a+k  +   t     el    +t+  + pg ++ te++ + 
  MMETSP1061-20121228|14408_1  22 LIGASSGIGASIAEGLFRSGANVCIGARRLgklEEVAQACKDKYPDSEGNILPIQCDVTSRESVQNLCDKACEHYScaSVDAMICCSGVMFWTKMKNVMMDQWDQTIDVNCRGPTNCMGAVIPKMIEAKK-GKIITISSDAGVRDFPNLAVYCASKRFVETLTEVTRRELVGTGVTLHTVQPGDVKgTELIMKN 214
                  579**********************99874111345677777777788999999**************99998765214678999*************************************99***988.69**************************************************88636666543 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.1   4.9e-13   1.5e-10       2     191 ..      14     210 ..      13     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 4.9e-13
    TIGR03325   2 klkdevvlvtggasglgralvdrfvaegarvavldksaagleeleaahgdk.......vvgvegdvrllddhkeavarcveaf..gkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvs.nagfypngggalytaakhavvglvkelayel.apyvrvngvapggls.tdl 191
                   l+++v+ + g +sg+g ++ +     ga+v++  +   +lee+ +a  dk       ++ ++ dv + ++ ++  ++  e +    +d++i  +g+  + t++ ++  d+    +d+  ++n +g   ++ a++p +++++ + i+t+s +ag       a+y a+k  v  l      el +  v +  v pg ++ t+l
  MMETSP1061-20121228|14408_1  14 MLTNQVICLIGASSGIGASIAEGLFRSGANVCIGARRLGKLEEVAQACKDKypdsegnILPIQCDVTSRESVQNLCDKACEHYscASVDAMICCSGVM-FWTKMKNVMMDQ----WDQTIDVNCRGPTNCMGAVIPKMIEAKKGKIITISsDAGVRDFPNLAVYCASKRFVETLTEVTRRELvGTGVTLHTVQPGDVKgTEL 210
                  5899****************************999998888888765544322223339999************99999998733579********97.456666665555....666778******************99888888885389**999999*******9998888877788735678888999988765555 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.1   2.6e-08   8.2e-06       4      98 ..      18     117 ..      15     143 .. 0.76
   2 ?    2.1   0.0     0.078        25     199     231 ..     180     212 ..     150     217 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 2.6e-08
    TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaaksl..glpkdsyti..lkldlasldsvrkfveqfre..sgrsldalvcnaavylpllke 98 
                  + + + gassg+g   a  l   g   v +  r l k e++a+     +p  +  i  ++ d++s +sv+++ ++  e  s  s+da++c + v + +  +
  MMETSP1061-20121228|14408_1  18 QVICLIGASSGIGASIAEGLFRSG-ANVCIGARRLGKLEEVAQACkdKYPDSEGNIlpIQCDVTSRESVQNLCDKACEhySCASVDAMICCSGVMFWTKMK 117
                  566789******************.899999******9999876522466655566226789**********998755237889*******9999876443 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.078
    TIGR01289 199 ltvrelhrryhdetgivfaslypgcvadtglfr 231
                   t  e+ rr    tg+++ ++ pg v  t l+ 
  MMETSP1061-20121228|14408_1 180 ETLTEVTRRELVGTGVTLHTVQPGDVKGTELIM 212
                  477899999999**************9999875 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1   3.3e-06     0.001       3     177 ..      20     185 ..      18     256 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 3.3e-06
    TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsals..vdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcaikpfkswalYCaskaaRdmffqv 177
                  + + Gas G+G ++a+ l +     g  + + aR +  L e  +  + + ++    +     d+ + + v++l     e       + ++     G +  +  +++    +++ ++  d n          ++ k+   ++ +  ++ +ss + ++ f+ +a YCask   + +  v
  MMETSP1061-20121228|14408_1  20 ICLIGASSGIGASIAEGLFR----SGANVCIGARRLGKLEEVAQACKDKYPDSEgnILPIQCDVTSRESVQNLCDKACEHYSCASVDAMI--CCSGVMFWTKMKNV---MMDQWDQTIDVNCRGPTNCMGAVIPKMI--EAKKGKIITISSDAGVRDFPNLAVYCASKRFVETLTEV 185
                  5577************9999....899999999999999999999997776665115556678888889999998888888888877655..55787776655555...3556777888888776655555655555..36677899*********************887776665 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00013     0.042       5      74 ..      21      92 ..      17     115 .. 0.75
   2 ?    3.2   0.0     0.028       8.8     167     204 ..     166     203 ..     148     224 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00013
    TIGR02685  5 lvtGaakriGrsiavklhqeGyrvvlhyrrs...aeaasslaaelnaeransavvvkadlsnsasllssceei 74
                  + Ga+  iG sia+ l + G +v++  rr    +e a++  ++      +  + +++d++  +s+ + c++ 
  MMETSP1061-20121228|14408_1 21 CLIGASSGIGASIAEGLFRSGANVCIGARRLgklEEVAQACKDKYPD-SEGNILPIQCDVTSRESVQNLCDKA 92
                 5679**********************998751114444444444433.3445677999999999999888865 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.028
    TIGR02685 167 llgfslytmakealeGltrsaalelaslqirvngvapG 204
                   +  ++y  +k+ +e lt+ +  el   ++ + +v pG
  MMETSP1061-20121228|14408_1 166 FPNLAVYCASKRFVETLTEVTRRELVGTGVTLHTVQPG 203
                  456789*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1126.03
//
Query:       MMETSP1061-20121228|14405_1  [L=744]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.26
# Mc/sec: 3776.92
//
Query:       MMETSP1061-20121228|14409_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 2229.15
//
Query:       MMETSP1061-20121228|14407_1  [L=912]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-172  571.5   0.0   4.3e-172  571.1   0.0    1.1  1  TIGR00408 proS_fam_I: proline--tRNA ligase
    1.1e-23   81.8   0.2    1.7e-13   48.1   0.0    2.1  2  TIGR00409 proS_fam_II: proline--tRNA ligase
    2.1e-12   44.6   0.0      3e-06   24.2   0.0    2.2  2  TIGR00418 thrS: threonine--tRNA ligase
    4.6e-05   20.0   0.0    7.4e-05   19.3   0.0    1.3  1  TIGR00389 glyS_dimeric: glycine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  571.1   0.0  4.2e-175  4.3e-172       3     475 .]     416     912 .]     414     912 .] 0.98

  Alignments for each domain:
  == domain 1    score: 571.1 bits;  conditional E-value: 4.2e-175
    TIGR00408   3 ekeedfseWydqilekaelldyydvkGlvvllpnsfkiwekiqkllddkldeieveevyfPllipeselekEkeHikGFepEvylitqaGkkkLeeklalRPtsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkhtrPllRtrEflfkEaHtlhataeeaeeevlkildlYkelieelLaiPvlvgrksekekFaGaeytvaieaimp.dgralqiatsHdLgqnFaktFeikfenkegekayayqtsyGlstRvigaliliHsDdkGLvlPpkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdn.rpGkkfskaElkGiPlrlevgpkdieknavvvlrRdekkKvevsldeleekvkelleelkedlfkkAkelveekvkeveeleeikqalnekkgvvlvalkg..eeeleeelkekvk.....................atircieedldvldlgqkCikcerkakkyvllakay 475
                  +k+e+f+ Wy++++  +e+++yyd++G+++l+p s+kiwe iq+++++++ e +ve+ yfPl+++ + lekEk+H++GF+pEv+++t+ G  +L++++a+RPtsEt++y+ ++ w+ks+rdLPlklnq+ nv+R+E+k + P+lR rEfl++E+Ht+hat eea+e v+++ldlYk+ +++lL++Pv+ g k+++ekFaG+++t+++ea++p  gra+q atsH+LgqnF k+F+ikf++++g+ ++a+qts+Gl tR ig+++++H+DdkGLv+Pp+v+p+q v++pi+ kk   k   +++ +v ++L++ ++R + d+r   +pG+k++++E kG+P+r+e+gp diek++v v+ R++ +K+ ++++ l +++ke le++++++f+kA + ++ +v++v++++e+++ l++ + +vl++++g  +e+ ee +k+ ++                     a+ +ci+++++ l  g+kCi ++  a+  vl +++y
  MMETSP1061-20121228|14407_1 416 KKAENFPMWYSNVIVLSEMISYYDISGCYILRPWSYKIWELIQQWFNKQILELGVENCYFPLFVSMDRLEKEKDHVEGFAPEVAWVTRSGDGELAKPIAVRPTSETIMYPAFSDWIKSHRDLPLKLNQWSNVVRWEFKDPTPFLRSREFLWQEGHTAHATFEEADEMVMAALDLYKQAYQDLLCVPVIPGYKTKHEKFAGGHQTTTVEAYIPiSGRAIQGATSHNLGQNFGKMFDIKFQDEKGDSKVAWQTSWGLTTRTIGVMVMVHGDDKGLVMPPRVSPVQAVIVPIVSKKLCMKDANQYCLSVLQNLEANGLRSKYDDRSMyNPGWKYNHWEQKGVPIRIEIGPMDIEKKQVRVVVRHNGEKIDLPVEGLGAHLKEKLEDIHKAMFEKALAERDGHVVKVTDWNEFVPNLEKNN-LVLTPWCGpeHEDWEEWVKKTSReeslanlgeevedertatsvaAKTLCIPFEQPELPDGSKCIASGMPATCWVLWGRSY 912
                  799*****************************************************************************************************************************************************************************************************************456*************************************************************************99999999***************************99*****************************************************************************************999.*******94356799999999999*****************************************************998 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   1.6e-11   1.7e-08      36     188 ..     440     597 ..     427     603 .. 0.90
   2 !   48.1   0.0   1.7e-16   1.7e-13     415     559 ..     639     786 ..     629     795 .. 0.91

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 1.6e-11
    TIGR00409  36 asGlynylPlalrvlekvenivreemnkagaievllpalqs.aelWqesgRwdkygeellrlkDrke....refvLgpthEEvitdlvkneiksYkqlPvnlYqiqtKfRDEiRPRfGllRgREFimKDaYsFhsdeeslkatyqkldeaYkkifsrl 188
                   sG y   P ++++ e +++  ++++ + g  ++ +p ++s   l +e +  + +++e+  +  +++    +  ++ pt E  +     + iks ++lP++l q  +  R E +     lR+REF+ +++   h++ e++++   +  + Yk+ +++l
  MMETSP1061-20121228|14407_1 440 ISGCYILRPWSYKIWELIQQWFNKQILELGVENCYFPLFVSmDRLEKEKDHVEGFAPEVAWVTRSGDgelaKPIAVRPTSETIMYPAFSDWIKSHRDLPLKLNQWSNVVRWEFKDPTPFLRSREFLWQEGHTAHATFEEADEMVMAALDLYKQAYQDL 597
                  5999**************************99*****99886789999*********99888777662222667899***************************************************************999999999999988876 PP

  == domain 2    score: 48.1 bits;  conditional E-value: 1.7e-16
    TIGR00409 415 FkLGtkYskalkatfldeegkeqvlemGCYGiGvsRlvsaivEqkrDekGiiWpkaiAPyevvivvsnvkd...eeqkklaeevyselkakgvdvllDdrne.raGvkfrdseliGiplavvvGkksldnkeiEvkkrrngekqlikka 559
                   +LG+++ k ++++f+de+g  +v     +G+  +R+++ +v  + D+kG++ p  + P + viv+   k+   ++ +++   v ++l+a+g    +Ddr    +G k +  e  G+p+++ +G   +++k++ v+ r+ngek  + ++
  MMETSP1061-20121228|14407_1 639 HNLGQNFGKMFDIKFQDEKGDSKVAWQTSWGL-TTRTIGVMVMVHGDDKGLVMPPRVSPVQAVIVPIVSKKlcmKDANQYCLSVLQNLEANGLRSKYDDRSMyNPGWKYNHWEQKGVPIRIEIGPMDIEKKQVRVVVRHNGEKIDLPVE 786
                  57*****************************9.59*****************************9998888665778899999*****************86379*************************************9776655 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.1e-07   0.00021     192     342 ..     442     597 ..     427     611 .. 0.86
   2 !   24.2   0.0   2.9e-09     3e-06     421     562 ..     644     793 ..     628     796 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.1e-07
    TIGR00418 192 GlvlwlpkGalirklledfvrekllkrgyeevetPiladle.lweisghldkyk.ermfrfkeee...ekelvlkpmnCpghilifksslrsyrdLPlrlaelgvvhRyEksGeLvGLkRvRgftldDaHifct.edQikeEiknalrliqkvlkkl 342
                  G  +  p   +i +l++++++++ l+ g e+ + P  ++++ l + + h++ +  e  + +++ +    k ++++p         f++ ++s+rdLPl+l + + v R E +   + + R R+f  +  H+  +  + ++e + +al+l ++ +++l
  MMETSP1061-20121228|14407_1 442 GCYILRPWSYKIWELIQQWFNKQILELGVENCYFPLFVSMDrLEKEKDHVEGFApEVAWVTRSGDgelAKPIAVRPTSETIMYPAFSDWIKSHRDLPLKLNQWSNVVRWEFKDP-TPFLRSREFLWQEGHTAHAtFEEADEMVMAALDLYKQAYQDL 597
                  66666677778999*********************9988762667789*****73556766666655567789999999999999**************************976.6788************8766999*999*******99999987 PP

  == domain 2    score: 24.2 bits;  conditional E-value: 2.9e-09
    TIGR00418 421 elperfdltyvdedekekrPviiHrailGsieRfiaiLl....EkaagelPlwLaPvQvrvipvsek......hldyakkvaeklkkegirvdvddrne.klgkkiReaqkekipyvlvvGdkEveeeavtvRerkeekkekmsleellekvr 562
                  + ++ fd+++ de+++ k          G   R i++++    +  +  +P  ++PvQ++++p+  k        +y+ +v ++l+++g+r + ddr+  + g k  + +++ +p+ + +G  ++e+++v v  r++++k  +++e l  +++
  MMETSP1061-20121228|14407_1 644 NFGKMFDIKFQDEKGDSKVAWQTS---WGLTTRTIGVMVmvhgDDKGLVMPPRVSPVQAVIVPIVSKklcmkdANQYCLSVLQNLEANGLRSKYDDRSMyNPGWKYNHWEQKGVPIRIEIGPMDIEKKQVRVVVRHNGEKIDLPVEGLGAHLK 793
                  556778888888877777554444...44444444444411114455667*************9755122222468********************9863689************************99999999999999999887766665 PP

>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.2e-08   7.4e-05     463     563 ..     688     794 ..     668     796 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 7.2e-08
    TIGR00389 463 lrlkpkvaPikvlvlplvnke....elkeiakeiakaLrkeeiiikyddsgs..iGkrYaraDeiGtpfavtiDfetleDetvtlReRdslkqvRvkieelvsalkk 563
                  l ++p+v+P++ +++p+v+k+    + ++   ++ ++L  ++++ kydd      G +Y + ++ G+p  + i    +e + v +  R + ++    +e l + lk+
  MMETSP1061-20121228|14407_1 688 LVMPPRVSPVQAVIVPIVSKKlcmkDANQYCLSVLQNLEANGLRSKYDDRSMynPGWKYNHWEQKGVPIRIEIGPMDIEKKQVRVVVRHNGEKIDLPVEGLGAHLKE 794
                  779***************9962222445556789***************988678*************************999999998888888888887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (912 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.46
# Mc/sec: 2616.83
//
Query:       MMETSP1061-20121228|14410_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   11.7   1.4      0.026   11.1   1.0    1.2  1  TIGR02677 TIGR02677: TIGR02677 family protein


Domain annotation for each model (and alignments):
>> TIGR02677  TIGR02677: TIGR02677 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.0   6.3e-06     0.026     377     420 ..      92     140 ..      87     143 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.3e-06
    TIGR02677 377 rpekvrdrteeraekaerareEraraeqalaeL.....vtdgevrLsdl 420
                  r ek r+ ++er+e+++++ +Era +e+ +++L     +  +ev+L++l
  MMETSP1061-20121228|14410_1  92 RVEKLREINNEREELMKQYLAERAAMEAKFQKLseplyERRKEVVLGNL 140
                  789****************************996554445566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.43
# Mc/sec: 1089.68
//
Query:       MMETSP1061-20121228|14414_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 725.94
//
Query:       MMETSP1061-20121228|14411_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 2033.46
//
Query:       MMETSP1061-20121228|14412_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 2569.39
//
Query:       MMETSP1061-20121228|14416_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 439.96
//
Query:       MMETSP1061-20121228|14415_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       416  (0.101414); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1578.79
//
Query:       MMETSP1061-20121228|14418_1  [L=698]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 2559.12
//
Query:       MMETSP1061-20121228|14419_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-08   30.2   0.0    1.4e-07   29.5   0.0    1.3  1  TIGR01068 thioredoxin: thioredoxin
    2.2e-05   22.5   0.0    3.3e-05   22.0   0.0    1.3  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    4.4e-05   21.0   0.0    5.1e-05   20.8   0.0    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
  ------ inclusion threshold ------
      0.022   12.2   0.0      0.033   11.6   0.0    1.2  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   1.3e-10   1.4e-07       9      76 ..     134     201 ..     124     218 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.3e-10
    TIGR01068   9 tvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnv.deeqeiaakygirsiPtlllfk 76 
                  ++ ++dk++ v ++ +WC +Ck++ P +  la +++ +v+++++ v  e+ ++ +  ++ s+P l l+ 
  MMETSP1061-20121228|14419_1 134 DTGENDKMMAVLWYSPWCKACKAVIPGIRTLA-KRHPDVQFIQVPVlGENANLHQGLDVPSVPFLHLYT 201
                  455789999***********************.55668******98579999***********997765 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.3e-08   3.3e-05      11      78 ..     136     200 ..     124     220 .. 0.70

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.3e-08
    TIGR01126  11 ldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkff 78 
                   +++k++ v +y+PWC  Ck++ P    lak+  + +  +++  +   ++ +l + ++v + P l+++
  MMETSP1061-20121228|14419_1 136 GENDKMMAVLWYSPWCKACKAVIPGIRTLAKRHPDVQ-FIQVPVLG--ENANLHQGLDVPSVPFLHLY 200
                  34789999********************999877533.34444332..33445555666666666655 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0     5e-08   5.1e-05     354     475 ..     127     249 ..      89     250 .. 0.74

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 5e-08
    TIGR01130 354 nfdeivld...etKdVLvefYApWCGHCkkLapiYeelaekykkeedvviakldataNdvpefevegFPTilfvpagkksepvkyegdR.tledlvkFikknatielegkkeeeeekdeekekkde 475
                   f+ei  d   ++K   v  Y pWC  Ck+  p    la++  + + + +  l   aN ++  +v + P + +++ ++ + + + + +R  l+ + k +      ++  ++   e k+ e+++++e
  MMETSP1061-20121228|14419_1 127 DFKEILDDtgeNDKMMAVLWYSPWCKACKAVIPGIRTLAKRHPDVQFIQVPVLGENANLHQGLDVPSVPFLHLYTPEDPRLVEELKMTRkRLSGFQKLLMDYERGSCTLEH---EVKEGEDHQHTE 249
                  5666665522257888999*************************66999999999***9999*********9998887753333333331466666666655555444433...445555555555 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.2e-05     0.033      18      92 ..      97     168 ..      89     185 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.2e-05
    TIGR00385  18 llkrnaegedikelesaligkpvpaekeaelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelakeg 92 
                  +l+rn+    +++ + +   k vp++++  l++  ++l+ ++ ++ k++ +  ++ WC  C+a  p ++ lak+ 
  MMETSP1061-20121228|14419_1  97 QLRRNQSSTSPAAPKESARSKLVPDVRT--LQDFKEILD-DTGENDKMMAVLWYSPWCKACKAVIPGIRTLAKRH 168
                  6777777777777766667788888764..555556888.88899999999999*****************9984 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1673.86
//
Query:       MMETSP1061-20121228|14420_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    5.9   9.4        1.9    5.8   6.5    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
        2.5    4.3  23.1        3.1    4.0  16.0    1.1  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   6.5   0.00092       1.9     174     259 ..      17      99 ..      11     149 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00092
    TIGR01661 174 snskallsdleavlnaqltrvprstiltaaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaag 259
                  s+s+al + l+a + a  + ++ + +++aa+ a++++aa +    a    a  a      + a   aa  a++ a+++a+++la  
  MMETSP1061-20121228|14420_1  17 SDSHALAAALHAATGATAAAAAAAALASAASAAAAAAAALASAAAAA---AAAASAAAATTAAAALAAAAATLHATAAATTSLARP 99 
                  55556666666665555555333333333332222222222111111...112222333334444455555566666666666443 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  16.0    0.0015       3.1     233     316 ..      34     122 ..      17     134 .. 0.55

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0015
    TIGR01348 233 aapaaaea.pakaeaaaaapaaeaeeaaaapaaakaeakap.vdantendakvdhaaPavrrlar.elGv..dlskvkgtgkkGrilre 316
                  aa aaa+a   +a+aaaaa aa a++aaaa+aaa a a+++   a +   a+++ +a a   lar e+    d++ v+g+ +   ilre
  MMETSP1061-20121228|14420_1  34 AAAAAAAAlASAASAAAAAAAALASAAAAAAAAASAAAATTaAAALAAAAATLHATAAATTSLARpEMSAnrDIAVVEGSAQGIAILRE 122
                  22222222033333333334444444444444444333333034455666677444556778998655442278899998888888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       762  (0.185763); expected 82.0 (0.02)
Passed bias filter:                      190  (0.0463189); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|14422_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|14421_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 2946.34
//
Query:       MMETSP1061-20121228|14423_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1598.14
//
Query:       MMETSP1061-20121228|14426_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-26   89.7   0.0    3.8e-26   89.1   0.0    1.4  1  TIGR01068 thioredoxin: thioredoxin
    2.1e-15   54.7   0.0    3.6e-15   54.0   0.0    1.4  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    3.1e-12   44.6   0.0      5e-12   43.9   0.0    1.3  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    1.9e-07   28.7   0.0    3.3e-07   27.9   0.0    1.4  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
    5.7e-05   21.0   0.0    0.00015   19.6   0.0    1.7  2  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
     0.0013   15.2   0.0     0.0024   14.3   0.0    1.4  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
     0.0026   15.4   0.0     0.0044   14.6   0.0    1.3  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   6.5e-29   3.8e-26       4     100 ..     265     361 ..     262     362 .] 0.94

  Alignments for each domain:
  == domain 1    score: 89.1 bits;  conditional E-value: 6.5e-29
    TIGR01068   4 enfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeliekl 100
                  e++++++ +   l l+D +A+WCgpC+m+aP l+e+a+e+ ++++++K++ d+ ++++++ +++ +Ptl+lf+ g+e++r+ Ga +k++l  +i+++
  MMETSP1061-20121228|14426_1 265 EDVRKEIDHPGSLLLLDVYATWCGPCQMIAPFLKEIAAEQGDQLRIIKMDSDKYPKLSSELKVQGLPTLVLFQGGNEINRIEGAPTKEQLMGWIDSH 361
                  56777788878899*****************************************************************************999875 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   6.1e-18   3.6e-15       4     104 ..     265     361 ..     262     362 .] 0.91

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 6.1e-18
    TIGR01126   4 enfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefveek 104
                  e++ + + +  + +l++ ya WCG C+ +aP  +++a+e     +++ i k+d+++  +l+s++kv+g Ptl +f+ g++  ++ eG+ ++e+l+ +++++
  MMETSP1061-20121228|14426_1 265 EDVRKEIDHPGSLLLLDVYATWCGPCQMIAPFLKEIAAEQG---DQLRIIKMDSDKYPKLSSELKVQGLPTLVLFQGGNE-INRIEGAPTKEQLMGWIDSH 361
                  56677788888999***********************8765...5799*****************************995.9***************9875 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0   8.6e-15     5e-12      19     105 ..     276     359 ..     257     362 .] 0.83

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 8.6e-15
    TIGR01130  19 elvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivkylk 105
                   l+L   YA WCG C+ +aP  ++ A+e   ++ ++ + k+D+ +  +l+++ +v+G PtL +f+ g++++  +G+ ++e+++ ++ 
  MMETSP1061-20121228|14426_1 276 SLLLLDVYATWCGPCQMIAPFLKEIAAE---QGDQLRIIKMDSDKYPKLSSELKVQGLPTLVLFQGGNEINRIEGAPTKEQLMGWID 359
                  5788999*************99998864...6667899***************************99999************99986 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   5.7e-10   3.3e-07      56     106 ..     268     320 ..     241     341 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5.7e-10
    TIGR00385  56 taevlkkgklvLlnvwasWCptCraehplLkelake.g..lrivgvdykDesqk 106
                   +e+ + g l Ll+v+a+WC++C+   p+Lke+a+e g  lri+ +d  D+ +k
  MMETSP1061-20121228|14426_1 268 RKEIDHPGSLLLLDVYATWCGPCQMIAPFLKEIAAEqGdqLRIIKMDS-DKYPK 320
                  4467778999***********************986257899*99994.55555 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       4.6   2.7e+03      13      22 ..      59      68 ..      50      73 .. 0.76
   2 !   19.6   0.0   2.6e-07   0.00015      11      79 ..     287     359 ..     280     362 .] 0.91

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 4.6
    TIGR00411 13 yCPkakkvve 22
                 +CP a  v +
  MMETSP1061-20121228|14426_1 59 FCPCAYVVSD 68
                 7998876655 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 2.6e-07
    TIGR00411  11 CPyCPkakkvveevakeegdkvevekinvmedlkkaleyGimavPaivi....ngkvefvGaPdkeeLveaik 79 
                  C  C +     +e+a e+gd++ + k++ ++ +k + e  +++ P++v+    n+  ++ GaP+ke+L+  i 
  MMETSP1061-20121228|14426_1 287 CGPCQMIAPFLKEIAAEQGDQLRIIKMDSDKYPKLSSELKVQGLPTLVLfqggNEINRIEGAPTKEQLMGWID 359
                  8889999999**************************************8777788999**********98775 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.1e-06    0.0024     375     437 ..     278     337 ..     226     353 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.1e-06
    TIGR00424 375 wlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillfp 437
                   l+ +ya wc  cq +    +e+a   a +g+++  ++ d d+      el+++  pt++lf 
  MMETSP1061-20121228|14426_1 278 LLLDVYATWCGPCQMIAPFLKEIA---AEQGDQLRIIKMDSDKYPKLSSELKVQGLPTLVLFQ 337
                  45668*********9988888887...568999999999999999999************996 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   7.6e-06    0.0044      14     104 ..     268     354 ..     258     360 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 7.6e-06
    TIGR02187  14 lkelknpvelvvFtdeskekCeyCeetkqlleelsevs.dklkleiydldteedkekvekykvervPtvileeegskdieirytGiPaGeEf 104
                   ke+ +p +l +      + C  C+ +  +l+e+++ + d  +l+i ++d+++  +  ++ kv+  Pt++l + g ++i+ r  G+P+ e +
  MMETSP1061-20121228|14426_1 268 RKEIDHPGSLLLLDV-YATWCGPCQMIAPFLKEIAAEQgD--QLRIIKMDSDKYPKLSSELKVQGLPTLVLFQGG-NEIN-RIEGAPTKEQL 354
                  566666666655444.6678*************9987734..67899999999999****************966.4443.66788876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1911.20
//
Query:       MMETSP1061-20121228|14428_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.30
# Mc/sec: 928.32
//
Query:       MMETSP1061-20121228|14424_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-63  213.3   0.0    1.5e-50  170.3   0.0    2.0  2  TIGR02730 carot_isom: carotene isomerase
    7.3e-27   92.0   0.0    1.2e-12   45.1   0.0    2.2  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    5.9e-24   82.4   0.0    7.2e-15   52.4   0.0    2.6  2  TIGR02734 crtI_fam: phytoene desaturase
    2.3e-09   34.9   0.1    4.1e-05   20.9   0.4    2.2  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    9.9e-07   26.1   1.8    1.7e-06   25.3   1.2    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    1.7e-06   25.1   0.0    3.4e-06   24.1   0.0    1.5  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    6.6e-05   19.5   0.5    0.00011   18.8   0.4    1.2  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    6.7e-05   19.6   1.6    6.7e-05   19.6   1.1    1.5  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00013   18.7   0.1    0.00075   16.2   0.1    2.1  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    0.00016   18.5   0.4    0.00026   17.8   0.3    1.3  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    0.00022   18.4   0.9    0.00035   17.7   0.6    1.3  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    0.00024   17.7   0.1    0.00047   16.7   0.1    1.4  1  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    0.00027   16.7   0.3     0.0004   16.1   0.2    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00061   16.7   0.3    0.00092   16.1   0.2    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0013   15.3   1.4     0.0018   14.9   0.3    1.7  2  TIGR01377 soxA_mon: sarcosine oxidase, monomeric form
     0.0015   15.2   1.0      0.033   10.8   0.1    2.2  2  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
     0.0022   14.4   0.3       0.32    7.3   0.0    2.1  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0025   14.1   1.7     0.0046   13.2   0.2    1.9  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0027   14.3   0.0        0.4    7.2   0.0    2.1  2  TIGR02731 phytoene_desat: phytoene desaturase
     0.0029   14.3   2.2      0.013   12.2   0.8    2.2  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0032   14.1   0.7      0.006   13.2   0.5    1.3  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0034   14.0   0.9     0.0034   14.0   0.7    1.8  2  TIGR01813 flavo_cyto_c: flavocytochrome c
     0.0056   14.2   0.8     0.0056   14.2   0.6    3.1  4  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0079   13.1   0.8      0.015   12.2   0.3    1.6  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
  ------ inclusion threshold ------
      0.016   11.4   0.8       0.23    7.6   0.2    2.1  2  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
      0.026   10.9   0.3      0.044   10.2   0.2    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
       0.05   10.0   0.5       0.11    8.9   0.0    1.6  2  TIGR01810 betA: choline dehydrogenase
       0.12    7.5   0.2       0.17    7.0   0.2    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
       0.86    6.2   4.1        0.7    6.5   0.1    2.3  3  TIGR01373 soxB: sarcosine oxidase, beta subunit family


Domain annotation for each model (and alignments):
>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.0   0.0   1.6e-13   2.3e-11       1      67 [.      92     161 ..      92     187 .. 0.86
   2 !  170.3   0.0   1.1e-52   1.5e-50     185     488 ..     288     613 ..     268     617 .. 0.81

  Alignments for each domain:
  == domain 1    score: 41.0 bits;  conditional E-value: 1.6e-13
    TIGR02730   1 ydaivigsgigglvtatqlaakgakvlvlekylipggsagyfer....egykfdvgaslifgfgdkgttnl 67 
                  yd+ivigsg+ggl + +  a  g kvlvle+++  ggsa  f r    e y f+vg s++ g+ dk ++n 
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGSAHTFTRvhngEKYSFEVGPSIFEGL-DKPSLNP 161
                  9************999999999*******************998665577********99888.4555555 PP

  == domain 2    score: 170.3 bits;  conditional E-value: 1.1e-52
    TIGR02730 185 llkfidiecfiwsvvpadltpminagmvlsdrhy...gginypkggvgeiaeklvkglekaggkirykarvtkiilendkavgvkladgekirakr.ivsnatrwdtfgkllkeenlpkkekkfrkaykkspsf...lslhlgvkadllp..egtechhllledwen.lekeegtifvsiptlldpelapegyhiihtftp..ssledweglsp..kdyeakkeadaarlidrlekilpgldealdykevgtprshrrflgredgtygpi.......prrklkg.llsmpfn..rtaidglycvgdstfpgqglnavafsgfacahrv 488
                  + +fid+ c  +   pa+   m    + + +r +        p gg  ++ e + +glek+ggk++ +a+v +i+ e+++avgv+l +g+ ++a++ +vsnat +dt + + ++e+ pkk  k+r++    p       l lgv a+ l      +  hl+++dw++ +++ +      ip+lld +++peg h+ih++++  +  e we l p   +yea ke+  + l   +e+ +p + + l++  +g+p +h  fl r+ gtyg         p+  l g +l++pf   +t idgl   gds+fpg g  + a sg + a  +
  MMETSP1061-20121228|14424_1 288 VRNFIDLMCI-FCGFPAK-GAMTAHILYILERFFeedAAFSVPIGGTSQLGETIQRGLEKFGGKLQLNAHVDEILIEDGRAVGVRLKNGNVVKARKaVVSNATPFDTVKLMPEKEDEPKKLTKWRNDLGTLPRHgaiSHLFLGVDAKDLDlsFIDDPAHLVIQDWDRsMQDSQNLCSFFIPSLLDKSVCPEGKHVIHVYSSggEPYEPWEKLKPgtPEYEAYKEERVEVLFGAVERCIPDIRDRLEFSIIGSPLAHEAFLRRDRGTYGMAwaagssaPQAGLLGkVLPFPFPnlKTPIDGLLRCGDSCFPGIGTPSAAASGAIAANTM 613
                  5578998884.3344543.33444445555665522256889**************************************************9965399**********999**************99888864111557899998765511557899*******96478888888899********************9732579******983359**************************************************7522221114444333356777743489*************************9988765 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.1   0.0   8.4e-15   1.2e-12       3      64 ..      93     158 ..      91     178 .. 0.85
   2 !   44.6   0.0   1.2e-14   1.7e-12     233     485 ..     334     610 ..     329     616 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.1 bits;  conditional E-value: 8.4e-15
    TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfkr....rgfifdvGatqvaGlepGG 64 
                  +v+viG+G++Glt++al ak G +v +le++ +vGG a tf r    +++ f+vG     Gl++  
  MMETSP1061-20121228|14424_1  93 DVIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGSAHTFTRvhngEKYSFEVGPSIFEGLDKPS 158
                  69***************************************99555558******99999998765 PP

  == domain 2    score: 44.6 bits;  conditional E-value: 1.2e-14
    TIGR02733 233 vlsdrlvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvanlpaqsllelle....eaalskgyrkrlkklpepsGalvlylavkkaalpv...dcpphlqflsdeqG........slfvsvskegdgraPkGeatl..iassftdvdeWssle..eedytakkkeytktilerleekfdleeeelvhkelatPrtferytarpeGivG...GlgqrlstfG......pfglas.rtPlkglWlvGdsiyPGeGtaGvsysalavv 485
                   l+++++ +l+k gg+l l+ +v++i  ++++a++++ ++ +       + + vv n ++ + ++l++    e ++ +++r+ l  lp+      l+l+v++++l     d p+hl + + ++         s+f+  s  +    P+G++ +   +s     ++W +l+  + +y+a k+e ++ +  ++e+ +   +++l+   ++ P + e +  r++G  G     g    + G      pf + + +tP++gl  +Gds +PG Gt   + s   ++
  MMETSP1061-20121228|14424_1 334 QLGETIQRGLEKFGGKLQLNAHVDEILIEDGRAVGVRLKNGNV----VKARKAVVSNATPFDTVKLMPekedEPKKLTKWRNDLGTLPRHGAISHLFLGVDAKDLDLsfiDDPAHLVIQDWDRSmqdsqnlcSFFIP-SLLDKSVCPEGKHVIhvYSSGGEPYEPWEKLKpgTPEYEAYKEERVEVLFGAVERCIPDIRDRLEFSIIGSPLAHEAFLRRDRGTYGmawAAGSSAPQAGllgkvlPFPFPNlKTPIDGLLRCGDSCFPGIGTPSAAASGAIAA 610
                  6899999*********************999999888776632....23334578888888887777754446778899*********9877778********9986222568998654433334566669788886.7888899****9876314566677899*999744689**********************************************9988433345555554422244478887659*******************98887766555 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.1   2.8e-09     4e-07       1      54 [.      94     151 ..      94     158 .. 0.89
   2 !   52.4   0.0   5.1e-17   7.2e-15     160     493 ..     272     618 ..     256     629 .. 0.73

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.8e-09
    TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleed....GfrfDtGPtvi 54 
                  ++ViG+G+gGL + ++ a+ G +v vle + k+GG a ++++      + f +GP+++
  MMETSP1061-20121228|14424_1  94 VIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGSAHTFTRVhngeKYSFEVGPSIF 151
                  69***********************************99876444336*******986 PP

  == domain 2    score: 52.4 bits;  conditional E-value: 5.1e-17
    TIGR02734 160 lrsldkkvarfikderLrqilsfhalfvggnP...fkassiYalisaleleaGVwfprGGtsalvealaklaedlggelrlnaeveeietegerataveledgerlea.davvsnaDlvhtykkllreeerrrksekklskkrlslslvvlyfGlkGvegelpqlaHHt..llfgerykelieeifkkselaedfsly..lvsptvtdpslAPegkeslyvLvPvphlga..aadvdwskegerlrdrilael...eeralpdlrerivverlltPadfedelna.........alGsafslehtltQsaffRprnrsekvdnlylvGagThPGvGvPgvliSaklvakliledla 493
                  +  l k+v++ +  +  r+ +    +f g      ++a  +Y+l   +e +a    p+GGts+l e +++  e+ gg+l+lna+v+ei  e++ra +v+l++g+ ++a +avvsna   +t k + ++e+    + kkl+k r  l+++  + G   +++ +  ++     l+f  +  +l   i + ++ ++d++ +  +  p+  d s+ Pegk+  +v +   +     ++   ++ e e ++++ ++ l    er +pd+r+r++++ + +P  +e+ l           a+Gs    +  l    +f   n +  +d+l   G    PG+G P+   S+ ++a+ +++ ++
  MMETSP1061-20121228|14424_1 272 FDDLSKTVDEIVTVPFVRNFIDLMCIFCGFPAkgaMTAHILYILERFFEEDAAFSVPIGGTSQLGETIQRGLEKFGGKLQLNAHVDEILIEDGRAVGVRLKNGNVVKArKAVVSNATPFDTVKLMPEKED----EPKKLTKWRNDLGTLPRH-GA--ISHLFLGVDAKDldLSFIDDPAHL--VIQDWDRSMQDSQNLcsFFIPSLLDKSVCPEGKHVIHVYSSGGEPYEpwEKLKPGTPEYEAYKEERVEVLfgaVERCIPDIRDRLEFSIIGSPLAHEAFLRRdrgtygmawAAGSSAPQAGLLGKVLPFPFPNLKTPIDGLLRCGDSCFPGIGTPSAAASGAIAANTMTHVDN 618
                  6678888999999999999999999999976511145667899**************************************************************998469*****99999865544444....444455555555555444.21..223333333333003343433333..34444444555554411345688889************986543322446777888888999888888874434677****************9887654431111111113456666677899999999************************************9987554 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.4   2.9e-07   4.1e-05       1      44 [.      94     137 ..      94     142 .. 0.93
   2 !   11.3   0.0   0.00023     0.033     198     282 ..     327     409 ..     283     414 .. 0.66

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 2.9e-07
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgs 44 
                  v+v+G G+ GL++++  a+ G +v +lE+  ++GG a  f++ +
  MMETSP1061-20121228|14424_1  94 VIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGSAHTFTRVH 137
                  89************************************998765 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00023
    TIGR03467 198 dlllprvdLselfvepaarylesrggevrlgtrvreleasaggiralveaaeet.laadavvl.Avpperaasllpe.edlaaklaal 282
                   +   ++ L    +e + r le+ gg+++l+++v e+ +++g++      +++   a +avv  A+p++ + +l+pe ed  +kl+++
  MMETSP1061-20121228|14424_1 327 VPIGGTSQL----GETIQRGLEKFGGKLQLNAHVDEILIEDGRAVGVRLKNGNVvKARKAVVSnATPFDTV-KLMPEkEDEPKKLTKW 409
                  333334444....4556679********************9995543334555524555555446666665.5777657777777766 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   1.2   1.2e-08   1.7e-06      21      59 ..      91     129 ..      84     136 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.2e-08
    TIGR00292  21 esDviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59 
                  + Dvi++G+G  GLt++   ak g kv+vle+++ +GG 
  MMETSP1061-20121228|14424_1  91 VYDVIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGS 129
                  68***********************************97 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   2.4e-08   3.4e-06       2      63 ..      92     155 ..      91     172 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.4e-08
    TIGR00031   2 fdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGnc..ydevdekgllvhkyGphifhtdn 63 
                  +d+i++G+G+ G  +    ak++ +vlv+e   ++GG +  +++v +++    + Gp if   +
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGSAhtFTRVHNGEKYSFEVGPSIFEGLD 155
                  9************************************873356788877777888888887655 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.4   7.7e-07   0.00011       3      39 ..      92     129 ..      91     135 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 7.7e-07
    TIGR01424   3 ydlfviGaGsGGvraarlaaalGakvaiaeedl.vGGt 39 
                  yd+ viG+G GG+ ++ l+a++G+kv + e ++ vGG+
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLESHIkVGGS 129
                  9****************************987548885 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   1.1   4.7e-07   6.7e-05       2      37 ..      92     128 ..      91     131 .. 0.93
   2 ?   -3.8   0.0       5.9   8.3e+02     216     258 ..     338     379 ..     334     388 .. 0.53

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 4.7e-07
    TIGR01350   2 ydvvviGgGpgGYvaAiraaqlglkvalvek.eklGG 37 
                  ydv+viG+G gG ++   +a+ g kv+++e   k+GG
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLEShIKVGG 128
                  9*****************************9678888 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 5.9
    TIGR01350 216 vlkkklkkkgvkiltnakvtevekeedevv.veakkkevetlea 258
                  ++++ l+k g k+  na+v e+  e+ + v v+ k++  ++++a
  MMETSP1061-20121228|14424_1 338 TIQRGLEKFGGKLQLNAHVDEILIEDGRAVgVRLKNG--NVVKA 379
                  5666666666677777777655544444333555544..23333 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.1   5.3e-06   0.00075       1      46 [.      92     138 ..      92     144 .. 0.87
   2 ?   -0.7   0.0      0.73     1e+02     261     297 ..     579     614 ..     577     616 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.3e-06
    TIGR01292   1 ydviiiGaGpaGltaaiYaaranlktlliegk.eaggqltttteven 46 
                  ydvi+iG+G +Glt +  +a+++ k+l++e++ + gg   t t v n
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLESHiKVGGSAHTFTRVHN 138
                  79***************************986255677777788876 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.73
    TIGR01292 261 mrTsveGvfaaGDvrdkslrQvvtaagdGaiAalsve 297
                   +T ++G+  +GD +         aa++GaiAa++++
  MMETSP1061-20121228|14424_1 579 LKTPIDGLLRCGDSCFPG-IGTPSAAASGAIAANTMT 614
                  589999999999987744.45678999*****99876 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.3   1.9e-06   0.00026       3      32 ..      92     121 ..      90     132 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.9e-06
    TIGR01438   3 ydliviGgGsGGlaaakeaaklgakvllld 32 
                  yd+iviG+G GGl++   +ak+g+kvl+l+
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLE 121
                  9***************************97 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.6   2.4e-06   0.00035       3      39 ..      92     129 ..      90     137 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 2.4e-06
    TIGR01421   3 ydylviGGGsGGiasarraaeyGakallveek.klGGt 39 
                  yd++viG G GG++    +a+yG+k+l++e++ k+GG+
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLESHiKVGGS 129
                  ******************************98678886 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   3.3e-06   0.00047       4      50 ..      91     138 ..      89     152 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 3.3e-06
    TIGR03143   4 lydlvviGgGpaglsaGiyagraklkvliiekd.elGGqititsevvn 50 
                  +yd++viG+G  gl+ G  +++   kvl++e + ++GG  ++ + v n
  MMETSP1061-20121228|14424_1  91 VYDVIVIGSGMGGLTCGALSAKYGSKVLVLESHiKVGGSAHTFTRVHN 138
                  8******************************87478888877777766 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   2.9e-06    0.0004     170     210 ..      93     133 ..      86     143 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.9e-06
    TIGR01372 170 DvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllse 210
                  Dv+v+G+G  GL+     a+ G +v++++ + ++GGs ++ 
  MMETSP1061-20121228|14424_1  93 DVIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGSAHTF 133
                  9***********************************98765 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.2   6.5e-06   0.00092       1      31 [.      92     122 ..      92     135 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 6.5e-06
    TIGR03378   1 fDviiiGgGlaGlscalrlaeaGkktaiiaa 31 
                  +Dvi+iG+G+ Gl+c+   a+ G k++++ +
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLES 122
                  9*************************99754 PP

>> TIGR01377  soxA_mon: sarcosine oxidase, monomeric form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.3   1.3e-05    0.0018       1      47 [.      92     136 ..      92     142 .. 0.90
   2 ?   -2.6   0.0       2.7   3.8e+02     117     148 ..     351     383 ..     339     388 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.3e-05
    TIGR01377   1 fDvivvGaGvmGsaaayqLakrgkkvLLleqfdlphsrGsshGesri 47 
                  +Dviv+G+G+ G +++   ak g kvL+le+       Gs h  +r+
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLESHI--KVGGSAHTFTRV 136
                  8*****************************975..567999988886 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.7
    TIGR01377 117 elkerfanielpen.evglldelgGvlyaekal 148
                  +l+ +  +i + ++  vg+  ++g v++a ka+
  MMETSP1061-20121228|14424_1 351 QLNAHVDEILIEDGrAVGVRLKNGNVVKARKAV 383
                  455566666666652467777777777777776 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.1   0.00023     0.033       2      44 ..      92     131 ..      91     141 .. 0.75
   2 ?    2.8   0.0     0.059       8.4     123     183 ..     328     385 ..     321     393 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00023
    TIGR02485   2 vdvlviGgGlagl.CaaiearraGasvllleaaPrdlrGGnarh 44 
                   dv+viG+G+ gl C a+ a + G+ vl+le+     + G ++h
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLtCGALSA-KYGSKVLVLESHI---KVGGSAH 131
                  59**********96667665.6799******953...3333445 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.059
    TIGR02485 123 llGGGkalvnalyasaerlGveiryeaeveriereedgratiaarlaaaderiatkavvla 183
                  ++GG   l  ++ +  e++G +++ +a+v+ i+   ++++ +++rl  +++ ++++  v++
  MMETSP1061-20121228|14424_1 328 PIGGTSQLGETIQRGLEKFGGKLQLNAHVDEILI--EDGRAVGVRL-KNGNVVKARKAVVS 385
                  679999999999999*******************..7888899999.78888888766664 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.1     0.011       1.5     209     250 ..      88     131 ..      70     150 .. 0.83
   2 !    7.3   0.0    0.0022      0.32     259     334 ..     325     401 ..     320     407 .. 0.87

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.011
    TIGR03140 209 ekekydvlvvGgGPagaaaaiyaarkGlkvalvae..riGGqvk 250
                  +   ydv+v+G+G  g +    +a+ G kv ++ +  ++GG  +
  MMETSP1061-20121228|14424_1  88 DAGVYDVIVIGSGMGGLTCGALSAKYGSKVLVLEShiKVGGSAH 131
                  5668**************************99987334577665 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.0022
    TIGR03140 259 isvkettGsklaanleehikeynidvleeqkvkkie.teeeakevelesGevlkaksvivatGakWrelgvpGekey 334
                   sv+    s+l++ +++ ++++  ++  + +v +i  +++ a  v+l++G+v+ka+  +v+    +  + +  eke 
  MMETSP1061-20121228|14424_1 325 FSVPIGGTSQLGETIQRGLEKFGGKLQLNAHVDEILiEDGRAVGVRLKNGNVVKARKAVVSNATPFDTVKLMPEKED 401
                  578888899*************************9945566788*****************9998888888888775 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.1      0.49        69     513     572 ..       3      60 ..       2      75 .. 0.84
   2 !   13.2   0.2   3.2e-05    0.0046     381     427 ..      93     139 ..      84     146 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.49
    TIGR03997 513 fhqatsvaellaargkkveiitsalvvgqdLgltldlelwnrralekgielitdlvviev 572
                  f+qat+   +laa g++ +  t+++ v++  +++  l +    + +k++e++ d++  +v
  MMETSP1061-20121228|14424_1   3 FRQATALLGFLAAVGTTTTAFTPSFGVAPRTATS--LRSTAEDVQQKNVEQTEDTSREKV 60 
                  6899999*********************987765..667788899999999999876555 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 3.2e-05
    TIGR03997 381 kvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgr 427
                   v+v+G+G +Gl+  a +a+ G +v++le + ++GG  ++ +++   
  MMETSP1061-20121228|14424_1  93 DVIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGSAHTFTRVHNG 139
                  69***********************************9999888655 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.0     0.013       1.9       2      56 ..      94     151 ..      93     165 .. 0.79
   2 !    7.2   0.0    0.0028       0.4     189     286 ..     312     402 ..     302     435 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.013
    TIGR02731   2 vaiagaglaglsaakyladaghtpivleardvlggkvaaw.kdedgdwy..etglhif 56 
                  v++ g+g+ gl++    a  g + +vle++  +gg   ++ + ++g+ y  e g  if
  MMETSP1061-20121228|14424_1  94 VIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGSAHTFtRVHNGEKYsfEVGPSIF 151
                  8999*************************99999987766234556554225565555 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0028
    TIGR02731 189 ltalnrflqerygsklafldgapperlcqpivdyitsrggevrlnarlkeivlnedgsvkafaladlegkesfevtadayvsalavdilklllpkpwk 286
                  l  l+rf++e     + +     + +l + i   +++ gg+++lna++ ei ++ dg      l++++    ++    +   a++ d++kl+  k+ +
  MMETSP1061-20121228|14424_1 312 LYILERFFEEDAAFSVPI---GGTSQLGETIQRGLEKFGGKLQLNAHVDEILIE-DGRAVGVRLKNGN---VVKARKAVVSNATPFDTVKLMPEKEDE 402
                  556667766665444432...34568999999999****************775.6666678888888...233333344458999999987555544 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.8   9.1e-05     0.013       1      34 [.      94     127 ..      94     129 .. 0.95
   2 ?    0.3   0.0      0.36        50     110     156 ..     337     385 ..     330     388 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.1e-05
    TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkkig 34 
                  vi+iG G  Gl++ +  a+ g kVl+lE++ k+g
  MMETSP1061-20121228|14424_1  94 VIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVG 127
                  79**************************998887 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.36
    TIGR00275 110 daLlkelkelgvevlteskvksi.kkeeekfevet.ekkeleakkvila 156
                  ++ ++ l++ g +++++++v +i  ++ + ++v++ +++ ++a k +++
  MMETSP1061-20121228|14424_1 337 ETIQRGLEKFGGKLQLNAHVDEIlIEDGRAVGVRLkNGNVVKARKAVVS 385
                  56778899***************99**********88899999998876 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.5   4.3e-05     0.006     134     171 ..      92     129 ..      80     133 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 4.3e-05
    TIGR01316 134 kkvaviGaGpaGlavaselakkGhevtvfealhkpGGv 171
                    v viG+G  Gl++ +  ak G +v v e+  k GG 
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGS 129
                  6799******************************9995 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.7   2.4e-05    0.0034       1      39 [.      93     130 ..      93     139 .. 0.90
   2 ?   -1.3   0.0         1   1.5e+02     135     185 ..     338     384 ..     331     400 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.4e-05
    TIGR01813   1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNs 39 
                  dv+v+GsG+ Gl+ +    k g  +v+vle    +GG +
  MMETSP1061-20121228|14424_1  93 DVIVIGSGMGGLTCGALSAKYG-SKVLVLESHIKVGGSA 130
                  8************998888888.9********9999976 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1
    TIGR01813 135 klskkakkegvelrlnskvedlikddqgqvtGvkvkekgkkikikaakaVv 185
                  ++++ ++k g +l+ln++v +++  ++g+ +Gv  k+ +    +ka+kaVv
  MMETSP1061-20121228|14424_1 338 TIQRGLEKFGGKLQLNAHVDEILI-EDGRAVGVRLKNGN---VVKARKAVV 384
                  55666778888999*****99999.66799999987632...345555555 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.6     4e-05    0.0056       1      32 [.      92     123 ..      92     129 .. 0.94
   2 ?   -1.3   0.0       2.2   3.1e+02     195     209 ..     186     199 ..     164     238 .. 0.77
   3 ?   -1.2   0.0         2   2.9e+02      93     139 ..     335     380 ..     333     387 .. 0.76
   4 ?   -0.7   0.1       1.4   1.9e+02     248     296 ..     569     612 ..     546     613 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4e-05
    TIGR02032   1 yDvvvvGaGpaGssaAlrlakkGlrVlllekk 32 
                  yDv+v+G G  G + ++  ak G +Vl+le +
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLESH 123
                  9*****************************87 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 2.2
    TIGR02032 195 pggYgWvfPkgdgta 209
                  p+gY W+fP gd++a
  MMETSP1061-20121228|14424_1 186 PEGY-WRFPIGDKKA 199
                  6666.9*****9865 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 2
    TIGR02032  93 fDelLaekAqeagaelllettvlsveied.ekvkvevredekkevtak 139
                  ++e +++  ++ g +l l+++v ++ ied ++v v+++++  + v+a+
  MMETSP1061-20121228|14424_1 335 LGETIQRGLEKFGGKLQLNAHVDEILIEDgRAVGVRLKNG--NVVKAR 380
                  677888888999999999****999999988888888775..445554 PP

  == domain 4    score: -0.7 bits;  conditional E-value: 1.4
    TIGR02032 248 galiPirradektvtgnvllvGDAAglVkPltGeGIayamvagklAaev 296
                  g+++P+  ++ kt  +++l +GD+      + G G + a+ +g++Aa++
  MMETSP1061-20121228|14424_1 569 GKVLPFPFPNLKTPIDGLLRCGDS-----CFPGIGTPSAAASGAIAANT 612
                  678999999999999999999997.....47899999999999999986 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.3    0.0001     0.015       1      38 [.      92     129 ..      92     137 .. 0.90
   2 ?   -2.9   0.0       4.1   5.7e+02     172     203 ..     364     398 ..     348     403 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.0001
    TIGR03364   1 tdvvvvGaGivGlahAlaaarrGlkVtvierssraaGA 38 
                  +dv+v+G+G+ Gl   +  a+ G kV v+e + ++ G+
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGS 129
                  79****************************98877664 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 4.1
    TIGR03364 172 vetstvrtsrGevh.aeqvlVcsgadfet..Lfpe 203
                   ++  vr ++G+v+ a++ +V + + f+t  L+pe
  MMETSP1061-20121228|14424_1 364 GRAVGVRLKNGNVVkARKAVVSNATPFDTvkLMPE 398
                  44557899999999999999999886665225665 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.2    0.0016      0.23       1      34 [.      92     125 ..      92     132 .. 0.90
   2 ?    1.9   0.0      0.08        11     116     152 ..     353     388 ..     337     404 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0016
    TIGR00136   1 fdviviGaGhaGieaalaaarlgaktllltlnld 34 
                  +dviviG+G  G+   + +a+ g k+l+l  +++
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLESHIK 125
                  69**************************988775 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.08
    TIGR00136 116 qeevedliledndevkGvvtkdgaklrakavilttGt 152
                  + +v ++++e + +  Gv +k+g+ ++a++ ++   t
  MMETSP1061-20121228|14424_1 353 NAHVDEILIE-DGRAVGVRLKNGNVVKARKAVVSNAT 388
                  4567788888.55999************999998777 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.2   0.00031     0.044     144     178 ..      94     128 ..      88     136 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00031
    TIGR01318 144 vaviGaGpaGlacadvlaraGvkvvvfdrypeiGG 178
                  v viG+G  Gl+c  + a+ G kv v + + ++GG
  MMETSP1061-20121228|14424_1  94 VIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGG 128
                  89********************************9 PP

>> TIGR01810  betA: choline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1       1.4   1.9e+02       1      31 [.      93     122 ..      93     135 .. 0.79
   2 ?    8.9   0.0    0.0008      0.11     211     260 ..     350     396 ..     338     400 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 1.4
    TIGR01810   1 dyiiiGaGsaGsvlatrlsedvsnsvlvlea 31 
                  d i+iG+G  G   ++ ls    ++vlvle 
  MMETSP1061-20121228|14424_1  93 DVIVIGSGMGGL-TCGALSAKYGSKVLVLES 122
                  789*****8775.566799999999***995 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.0008
    TIGR01810 211 vrtralvdkivfegkratGvefkkggikervkankevilsagainspkll 260
                  ++ +a vd+i +e++ra+Gv +k+g+   +vka k v+  a+ +++ kl+
  MMETSP1061-20121228|14424_1 350 LQLNAHVDEILIEDGRAVGVRLKNGN---VVKARKAVVSNATPFDTVKLM 396
                  677899****************9998...899999999999998887775 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.2    0.0012      0.17     538     576 ..      92     130 ..      74     135 .. 0.89

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0012
    TIGR03315 538 hkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvv 576
                    v viG+G  Gl+ g + a+ G +v v+e + k+gG  
  MMETSP1061-20121228|14424_1  92 YDVIVIGSGMGGLTCGALSAKYGSKVLVLESHIKVGGSA 130
                  5799*******************************9975 PP

>> TIGR01373  soxB: sarcosine oxidase, beta subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0049       0.7      30      74 ..      91     133 ..      86     160 .. 0.73
   2 ?    0.5   0.1      0.32        45     191     236 ..     341     385 ..     336     396 .. 0.77
   3 ?   -4.0   0.0       7.4     1e+03     351     387 ..     580     618 ..     580     621 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0049
    TIGR01373  30 eydviivGgGGhGlatayylakehGitnvavlekgwlGgGnvgrn 74 
                  +ydvi++G+G  Gl+    l+ ++G ++v vle     gG +   
  MMETSP1061-20121228|14424_1  91 VYDVIVIGSGMGGLTC-GALSAKYG-SKVLVLESHIKVGGSAHTF 133
                  7********9999965.56788899.7999999876555554443 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.32
    TIGR01373 191 raadarGvdiiqncevtglikredgrviGvetsrGfigakkvgvav 236
                  r+ ++ G ++  n+ v ++  + dgr +Gv  + G++  ++ +v++
  MMETSP1061-20121228|14424_1 341 RGLEKFGGKLQLNAHVDEILIE-DGRAVGVRLKNGNVVKARKAVVS 385
                  7788888899999999996665.9**********987655555554 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 7.4
    TIGR01373 351 ktpldnlylncG.wgtGGf..katpasGtvfaallakdep 387
                  ktp+d+l   cG  ++ G    +  asG + a+++++ ++
  MMETSP1061-20121228|14424_1 580 KTPIDGLL-RCGdSCFPGIgtPSAAASGAIAANTMTHVDN 618
                  68888885.5552566554114567899999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        63  (0.0153584); expected 4.1 (0.001)
Passed Fwd filter:                        29  (0.00706972); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              29  [number of targets reported over threshold]
# CPU time: 0.58u 0.17s 00:00:00.75 Elapsed: 00:00:00.48
# Mc/sec: 1886.34
//
Query:       MMETSP1061-20121228|14427_1  [L=1022]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1022 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.38
# Mc/sec: 3549.81
//
Query:       MMETSP1061-20121228|14429_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-14   50.2   0.0    1.2e-13   49.0   0.0    1.5  1  TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE


Domain annotation for each model (and alignments):
>> TIGR03391  FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0     3e-17   1.2e-13      13     138 ..      61     193 ..      52     194 .. 0.84

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 3e-17
    TIGR03391  13 aeliatfaalrqwedryrqlillak...klpalpeelkkedtelsGcenrvwlgyq.....lledGklhfygdseGrivrGllavlltaveGktaeqllaadplalfdelGlraqlsasradGlkalaeavkai 138
                  + +++ fa+++q + ry+ql+ +a+   ++  lpe+ k ++ ++ Gc + v++  +     ++ d  + f gds+G + +Gl+a+l+    G tae++++ dp  +++   +++ l+  r +G+  + +++k+ 
  MMETSP1061-20121228|14429_1  61 KRVTEAFASIEQEQVRYKQLLYMAQttaEVNNLPESSKVPENKVPGCLSTVFVDGEaifndEIGDFVINFQGDSDGLMTKGLVALLVRCLSGNTAEAIQKVDPQ-FIKLARIDQSLTPGRNNGFLNMLQSMKNK 193
                  567899*****************983334789********************96541111144566789*********************************95.5566679***********99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1574.09
//
Query:       MMETSP1061-20121228|14430_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1957.84
//
Query:       MMETSP1061-20121228|14431_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 1111.75
//
Query:       MMETSP1061-20121228|14434_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1237.40
//
Query:       MMETSP1061-20121228|14432_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.3e-172  570.4   9.4   3.8e-172  570.2   6.5    1.0  1  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
    5.7e-74  247.4   8.8    6.5e-74  247.2   6.1    1.0  1  TIGR03989 Rxyl_3153: oxidoreductase, Rxyl_3153 family
    4.4e-65  217.7   7.6    5.3e-65  217.4   5.3    1.1  1  TIGR03451 mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
    5.5e-24   82.6   7.5    1.5e-22   77.9   5.2    2.0  1  TIGR00692 tdh: L-threonine 3-dehydrogenase
    4.6e-23   79.7  14.1    1.3e-22   78.2   9.8    1.6  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
    9.2e-21   72.1  12.2    4.4e-20   69.9   8.4    1.8  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
    5.6e-13   46.1  10.1    3.3e-12   43.5   7.0    1.9  1  TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
    2.6e-10   37.6   2.1    6.7e-06   23.1   0.3    2.1  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    1.8e-06   24.7   0.8     0.0073   12.9   0.0    2.1  2  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    2.2e-06   24.8   7.4      2e-05   21.6   5.1    2.0  1  TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein
    4.5e-05   20.9   0.2     0.0085   13.4   0.0    2.1  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
     0.0037   14.2   1.3       0.23    8.4   0.3    2.8  2  TIGR01202 bchC: chlorophyll synthesis pathway protein BchC


Domain annotation for each model (and alignments):
>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  570.2   6.5  1.1e-174  3.8e-172       1     368 []       9     382 .]       9     382 .] 0.97

  Alignments for each domain:
  == domain 1    score: 570.2 bits;  conditional E-value: 1.1e-174
    TIGR02818   1 ksraavawaageplkieevdvelpkkgevlvrivatgvchtdaftlsgadpegvfpvilghegagiveavgegvtslkvgdhviplytaecge..ckfcksgktnlcvavretqgkglmpdgtsrfs.kdgqpiyhymgtstfseytvvaeislakinkeaalekvcllgcgvttgigavlntakveegatvavfglggiglsviqgaklakasriiaidineakfelakklgatdlvnpkdy.dkpiqeviv.eltdggvdysfecignvnvmraalesahkgwgesiiigvagagqeistrpfqlvtgrvwkgsafggvkgrtelpglveqylkgeiklddfvtetm.pledineafdlmhegksirtvikl 368
                  k +a va a++ p+  ee+ v+ pk+gev v++v+  +chtd++tl g+dpeg+fp+ilghe + ive+vgegvts++ gdhvip yt++c e  c fc+s ktnlc ++r+tqg+glmpdgtsrf   +g+pi+h+mg+st+seytv+aeis akink+a+l+k cl+gcgv+tg+gav nt+kve  +tvavfglg++gl+v+qga++a+asriia+d+n++kfe+ak+lgatd+vnpk   d p+q+ i   +td+gvdysf+c gnv+vmr+ale+ah+gwg s iigva++g+eistrpfqlvtgr+wkg+afgg k rt++p+lve++l+g+ik+d+f+t+t  +++  n+a d +h gk++r+v+k+
  MMETSP1061-20121228|14432_1   9 KCKALVARAPKVPMVEEEITVMPPKAGEVRVKVVSNALCHTDIYTLDGHDPEGLFPCILGHEAGCIVESVGEGVTSVQPGDHVIPCYTPQCCEtsCVFCQSPKTNLCPKIRSTQGQGLMPDGTSRFVdSEGKPIFHFMGCSTMSEYTVIAEISCAKINKKADLHKACLFGCGVSTGLGAVWNTCKVETNSTVAVFGLGAVGLAVVQGAQMAGASRIIAVDVNPDKFEMAKQLGATDCVNPKTLgDVPVQKHIAgTMTDWGVDYSFDCTGNVEVMRSALECAHRGWGTSCIIGVAASGHEISTRPFQLVTGRIWKGTAFGGFKSRTDVPKLVERMLNGKIKIDHFITHTFcGVAGTNQAVDALHSGKCLRAVVKY 382
                  789****************************************************************************************76559******************************7368***************************************************************************************************************96589**99887479********************************************************************************************63799******************997 PP

>> TIGR03989  Rxyl_3153: oxidoreductase, Rxyl_3153 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.2   6.1   1.9e-76   6.5e-74       2     370 .]      10     382 .]       9     382 .] 0.90

  Alignments for each domain:
  == domain 1    score: 247.2 bits;  conditional E-value: 1.9e-76
    TIGR03989   2 tkaavlrelgkkfeveeielddPkegevkvklaasGlChsdehlvtGdlplekyPvvgGheGaGvvekvGpgvtelkeGdhvvlsfipaCG..rCrlCakGlqnlCdlGaallaGk.qlsdgtyrlhaadgedvgqmcllgtfseytvveeasvvkidkdipldkaalvgCgvttGfGsavkaadvkaGdtvvvvGiGGvGinavqGaavaGarkvvavdpvefkrekalklGathavasieealelvaeltnGkgadkaiitvgeveg..elieealklvakg.GrvvvtglakladedvklnlleltllqkelkGalfGeanpradiprllelykaGklkldelvtktyk.ldeinegyqdlleGknirGvivy 370
                   ka v r+++ ++  eei++ +Pk+gev+vk+++  lCh+d +  +G+ p   +P + Ghe   +ve vG+gvt++++Gdhv+  + p+C    C +C++ ++nlC +     +G+  + dgt r+  ++g+++ ++   +t+seytv+ e s+ ki+k+ +l+ka+l gCgv+tG G+  ++ +v++  tv+v+G+G vG++ vqGa++aGa++++avd+ + k e+a++lGat  v+  +     v++   G+++d  +      +g  e++ +al+   +g G+  ++g+a+   ++++  +++l+ + +  kG+ fG+ ++r+d+p+l+e   +Gk+k+d+++t+t+  +   n++ + l++Gk +r v++y
  MMETSP1061-20121228|14432_1  10 CKALVARAPKVPMVEEEITVMPPKAGEVRVKVVSNALCHTDIYTLDGHDPEGLFPCILGHEAGCIVESVGEGVTSVQPGDHVIPCYTPQCCetSCVFCQSPKTNLCPKIRST-QGQgLMPDGTSRFVDSEGKPIFHFMGCSTMSEYTVIAEISCAKINKKADLHKACLFGCGVSTGLGAVWNTCKVETNSTVAVFGLGAVGLAVVQGAQMAGASRIIAVDVNPDKFEMAKQLGATDCVNPKTLGDVPVQKHIAGTMTDWGVDYSFDCTGnvEVMRSALECAHRGwGTSCIIGVAASG-HEISTRPFQLV-TGRIWKGTAFGGFKSRTDVPKLVERMLNGKIKIDHFITHTFCgVAGTNQAVDALHSGKCLRAVVKY 382
                  6777778888888889**************************************************************************7336************986544.44413459*********************************************************************************************************************88888888888899999999988655444441267888888877766999999*99765.45777777765.456679**********************************964899******************98 PP

>> TIGR03451  mycoS_dep_FDH: mycothiol-dependent formaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.4   5.3   1.5e-67   5.3e-65       2     357 ..      10     381 ..       9     382 .] 0.88

  Alignments for each domain:
  == domain 1    score: 217.4 bits;  conditional E-value: 1.5e-67
    TIGR03451   2 vkaviarskgapveledivvpdpgpgevvvkiqacgvchtdlayreggi.sdefpfllgheaagvveavgegvtdvepgdyvvlnwravcge..crackrgrpkycfdthnaekkmtl.........edgtelsaalgigafaektlvaagqctkvdpaadpavagllgcgvmaglgaavntgevkrgdsvavigvggvgeaaiagaalagakkiiavdiddkklerarelgathtvnsse..edvv.eaireltggfgadvvidavgrpetykqafyardl.agtvvlvgvptpemklelplldvfsrggalksswygdclperdfpvlvdlylqgrldldkfvseri.slddveeafekmkagevlrsvvv 357
                   ka++ar+ + p+  e+i v  p +gev vk+ + ++chtd+   +g   +  fp +lghea  +ve+vgegvt+v+pgd+v+  +   c e  c  c+  +++ c + + ++ +  +         ++g+++   +g  ++ e t++a+  c+k++ +ad   a l+gcgv +glga  nt++v+ + +vav+g+g+vg a++ ga++aga++iiavd++  k+e+a++lgat+ vn ++  + +v ++i      +g+d   d  g  e  + a+       gt  ++gv     ++     ++   g   k + +g      d p lv+  l+g++++d+f++++  ++   ++a + +++g+ lr+vv+
  MMETSP1061-20121228|14432_1  10 CKALVARAPKVPMVEEEITVMPPKAGEVRVKVVSNALCHTDIYTLDGHDpEGLFPCILGHEAGCIVESVGEGVTSVQPGDHVIPCYTPQCCEtsCVFCQSPKTNLCPKIRSTQGQGLMpdgtsrfvdSEGKPIFHFMGCSTMSEYTVIAEISCAKINKKADLHKACLFGCGVSTGLGAVWNTCKVETNSTVAVFGLGAVGLAVVQGAQMAGASRIIAVDVNPDKFEMAKQLGATDCVNPKTlgDVPVqKHIAGTMTDWGVDYSFDCTGNVEVMRSALECAHRgWGTSCIIGVAASGHEISTRPFQLV-TGRIWKGTAFGGFKSRTDVPKLVERMLNGKIKIDHFITHTFcGVAGTNQAVDALHSGKCLRAVVK 381
                  5899**************************************99999761456*********************************99996434999*********9888776554440000011114566778889*****************************************************************************************************9974234451457777888********************87655269***********99998766664.577899********************************99638********************97 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   5.2   4.4e-25   1.5e-22      11     338 ..      22     380 ..      12     382 .] 0.75

  Alignments for each domain:
  == domain 1    score: 77.9 bits;  conditional E-value: 4.4e-25
    TIGR00692  11 avltevpvpelgknevlikvkatsicGtdvhiynwdewaqkrikvpqvlGhevaGevvgiGeevegvkvGdyvsa.ethivc.GkcvacrrGkshvc...rntkivG.........vdtaG........v..faeyvvvpadnifknpkdidpelaaiqeplGnavdtvl....es..dlaGesvlvsGaGpiGllavavakaaGasqvivsdkneyrlelakkvGatrvvnvaked...lvkvvaeltsgeGvdvvlelsGapkaleqgldavang.Grvallglpeskvtidltnkv.....ifkgltikGitGrklfetwykvsrliqsnkldlapiithkfk.ldefekgfelmrsGksGkvil 338
                  +v  e+ v  +  +ev +kv + ++c td  iy  d    + +  p +lGhe   +v+ +Ge+v +v+ Gd+v    t   c   cv c++ k+ +c   r t++ G         vd +G        +  ++ey v+      k+ k+ d + a+++      v t l    ++    +  +v+v G G +Gl  v  a+ aGas++i++d+n  + e+ak++Gat +vn++      ++k +a   +  Gvd   + +G+ + ++ +l+ + +g G   ++g+  s   i           i+kg    G   r   +  + v r+++  k++++  ith f  +   +++ +++ sGk+ + ++
  MMETSP1061-20121228|14432_1  22 MVEEEITVMPPKAGEVRVKVVSNALCHTD--IYTLDGHDPEGL-FPCILGHEAGCIVESVGEGVTSVQPGDHVIPcYTPQCCeTSCVFCQSPKTNLCpkiRSTQGQGlmpdgtsrfVDSEGkpifhfmgCstMSEYTVIAEISCAKINKKADLHKACLFG---CGVSTGLgavwNTckVETNSTVAVFGLGAVGLAVVQGAQMAGASRIIAVDVNPDKFEMAKQLGATDCVNPKTLGdvpVQKHIAGTMTDWGVDYSFDCTGNVEVMRSALECAHRGwGTSCIIGVAASGHEISTRPFQlvtgrIWKGTAFGGFKSRT--DVPKLVERMLNG-KIKIDHFITHTFCgVAGTNQAVDALHSGKCLRAVV 380
                  55567888888999**************9..577777776665.79*************************99751555566346************666568877733333444455554443322223335799999999999999999999999874...3344333111122102345789***********************************************98754111344454444456*********************999868888999998776666544330022266666666666664..445556666665.************99****************88765 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   9.8   3.8e-25   1.3e-22       3     270 ..      32     317 ..      30     322 .. 0.75

  Alignments for each domain:
  == domain 1    score: 78.2 bits;  conditional E-value: 3.8e-25
    TIGR03366   3 laeGevlvrvllatvCGsdlhtvaGrreg.klpsvlGheavGevvalgseeaaavdgeklavGqRvvwsvavsC..grCerCrrgltqkC...eslrkyGhes......lasgwel....sG..glaehvvllaGvaivavpddlpdavaapaaCatatvaaaleaagd.legrrvlvlGaGmLGLtaaaaaeerGasrviavDpsaeRrelaaafGaealaeeeelaevr.....keatdgravdvalelsGasaaveaalesldvg.GvvvlvGsvaPadevaldpeqvvR 270
                  +++Gev v+v   ++C +d +t+ G  ++   p++lGhea   v+ +g+++      + ++ G+ v+   + +C    C +C+   t+ C   +s +  G         ++s+ ++     G  +++e++v +a ++ +++  +     a+  +C ++t   a+ ++ +  ++++v v+G+G +GL+ +  a+ +Gasr+iavD+++++ e+a+++Ga++ +++++l +v        +    +vd  ++ +G+ + +++ale  + g G+  ++G  a + e++ +p q+v 
  MMETSP1061-20121228|14432_1  32 PKAGEVRVKVVSNALCHTDIYTLDGHDPEgLFPCILGHEAGCIVESVGEGV------TSVQPGDHVIPCYTPQCceTSCVFCQSPKTNLCpkiRSTQGQGLMPdgtsrfVDSEGKPifhfMGcsTMSEYTV-IAEISCAKINKKADLHKACLFGCGVSTGLGAVWNTCKvETNSTVAVFGLGAVGLAVVQGAQMAGASRIIAVDVNPDKFEMAKQLGATDCVNPKTLGDVPvqkhiAGTMTDWGVDYSFDCTGNVEVMRSALECAHRGwGTSCIIGVAASGHEISTRPFQLVT 317
                  579**********************9865168*******977777777775......78999999999988776333588888766666611155555554321111113344433111133213444444.445666667666666778999****9977665555554889*****************************************************99987643333334456899999**************9988879*******************9995 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.9   8.4   1.3e-22   4.4e-20       7     346 ..      18     380 ..      13     381 .. 0.77

  Alignments for each domain:
  == domain 1    score: 69.9 bits;  conditional E-value: 1.3e-22
    TIGR03201   7 pGkplvkeeleiaelgagevvvkvaGcGvchtdldyyydgvrtnhalplalGheisGrviqagagaaslvGkavivpavip.cG..ecelcksGkGticra.qkmpGndlq.GGfashivvpakgl.....c.......avdearlk..aagleleevsvvadavttpyqaavq.aglkkgdlviviGvGGvGgyavqvakalGa.avvaidideeklemvkkaGadlilnpkdisarevkkaikafakarGlrstewkilevsGskpGqesaldllsfg.atlvvvGytmdkve.....vrlsklmafdaralGnwGcppdlyaaaldlvldgkidlasfverr..pldqieevfaaahdhklkrrai 346
                  p  p+v ee+ +  + agev vkv    +chtd+ y  dg       p  lGhe    v   g g  s+   + ++p   p c    c +c+s k + c + +   G+ l   G +  +  + k +     c       ++ e   +  +   +l++ ++    v+t   a+ +   ++ +  v v G G vG  +vq a+  Ga  ++a+d+++ k+em k+ Ga   +npk +    v+k+i +   + G+  +    ++++G +   +sal+    g +t +++G + +  e     ++l     ++  a+G +    d  +   + +l+gki+++ f+ +    +   ++  +a h++k  r ++
  MMETSP1061-20121228|14432_1  18 PKVPMVEEEITVMPPKAGEVRVKVVSNALCHTDI-YTLDGHDPEGLFPCILGHEAGCIVESVGEGVTSVQPGDHVIPCYTPqCCetSCVFCQSPKTNLCPKiRSTQGQGLMpDGTSRFVDSEGKPIfhfmgCstmseytVIAEISCAkiNKKADLHKACLFGCGVSTGLGAVWNtCKVETNSTVAVFGLGAVGLAVVQGAQMAGAsRIIAVDVNPDKFEMAKQLGATDCVNPKTLGDVPVQKHIAGTMTDWGVDYS----FDCTGNVEVMRSALECAHRGwGTSCIIGVAASGHEistrpFQLVTGRIWKGTAFGGFKSRTDV-PKLVERMLNGKIKIDHFITHTfcGVAGTNQAVDALHSGKCLRAVV 380
                  6679*****************************8.999****************87777778999999988888888888765422599**********6524455655544555555544444321222231000000233322220123456777777788899*99999862689***************************779******************************************999864....9**************988765688888877655441111155566667888888888888876.7778889***********87622567889999******9988776 PP

>> TIGR02819  fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   7.0   9.6e-15   3.3e-12      38     266 ..      36     277 ..      17     290 .. 0.73

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 9.6e-15
    TIGR02819  38 gvilkvvttnicgsdqhmvrgrtta.eaglvlgheitgevievgrdveflkigdivsvpfniacg..rcrsckekktgvclnvnpar.....agaaygyvdmgg.....wvggq..seyvlvpyadfnllkfpdrdqalekirdltmlsdilptgyhgav..tagvktgstvyiagagpvglaaaasarllgaavvivgdlneerlaqarsfgc.etvdlkk..datlaeqieqilgepevdaavdavg 266
                   v +kvv+  +c +d + + g         +lghe    v  vg+ v  ++ gd v   +   c    c+ c+  kt++c ++  ++     + ++  +vd  g     ++g    sey ++  a+    k+ ++   l+k    +++   + tg  gav  t  v+t stv + g g vgla+ + a++ ga+ +i  d+n++++  a+ +g  + v+ k+  d  ++++i+  +    vd + d+ g
  MMETSP1061-20121228|14432_1  36 EVRVKVVSNALCHTDIYTLDGHDPEgLFPCILGHEAGCIVESVGEGVTSVQPGDHVIPCYTPQCCetSCVFCQSPKTNLCPKIRSTQgqglmPDGTSRFVDSEGkpifhFMGCStmSEYTVI--AEISCAKINKK-ADLHK---ACLFGCGVSTGL-GAVwnTCKVETNSTVAVFGLGAVGLAVVQGAQMAGASRIIAVDVNPDKFEMAKQLGAtDCVNPKTlgDVPVQKHIAGTMTDWGVDYSFDCTG 277
                  4779*****************8643134569****87777779***********99888887775237*************99877621222345556777654222223333211333332..33333333322.22333...233444567886.55434789***********************************************9636888776336778889999999999*******98 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.1e-05    0.0038      18      86 ..      25      92 ..      11      99 .. 0.85
   2 !   23.1   0.3     2e-08   6.7e-06      81     223 ..     138     283 ..     127     325 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-05
    TIGR02824 18 seaplpelkagevlikvaAaGvNrpDvlQraGkYppppgaseilGLEvaGevvavgeevskfkvGdrvc 86
                 +e ++  +kagev++kv    +   D+    G+ p       ilG E   +v +vge+v++++ Gd+v+
  MMETSP1061-20121228|14432_1 25 EEITVMPPKAGEVRVKVVSNALCHTDIYTLDGHDPE-GLFPCILGHEAGCIVESVGEGVTSVQPGDHVI 92
                 455566799***********************8543.34678*****999999**************97 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 2e-08
    TIGR02824  81 vGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTvwsnlfelaklkagetvLihggasGiGttaiqlakalgakvlvtag.sdekleaaekLGadvainyreedFvevvke...etegkGvdvilDivggsylek 223
                   G  ++  +    ++ey+v+ +  + ++ ++ +l +a      + T   ++ ++ k+++++tv + g  + +G + +q a+ +ga+ ++++  + +k e+a++LGa+  +n ++   v v k+   ++++ Gvd  +D+ g   + +
  MMETSP1061-20121228|14432_1 138 EGKPIFHFMGCSTMSEYTVIAEISCAKINKKADLHKACLFGCGVSTGLGAVWNTCKVETNSTVAVFG-LGAVGLAVVQGAQMAGASRIIAVDvNPDKFEMAKQLGATDCVNPKTLGDVPVQKHiagTMTDWGVDYSFDCTGNVEVMR 283
                  6777888888899****************************************************97.567999**********87777665278****************998776666554111455679999999888644433 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   2.1e-05    0.0073      80     106 ..      66      92 ..      34     111 .. 0.88
   2 !   10.5   0.1   0.00011     0.038     182     245 ..     189     252 ..     149     276 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.1e-05
    TIGR01751  80 iiGsdasGvvlrvGegvkrvkvGDevv 106
                  i G +a  +v  vGegv+ v+ GD+v+
  MMETSP1061-20121228|14432_1  66 ILGHEAGCIVESVGEGVTSVQPGDHVI 92 
                  8899*********************97 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00011
    TIGR01751 182 kkpaelkpGdavLiWGaaGGLGsyaiqlaraaGgip.vavvssedkaeiarelGaeavidrqdfd 245
                  ++  ++    +v ++G  G +G   +q a+ aG+   +av  ++dk e+a++lGa+ +++ +  +
  MMETSP1061-20121228|14432_1 189 WNTCKVETNSTVAVFG-LGAVGLAVVQGAQMAGASRiIAVDVNPDKFEMAKQLGATDCVNPKTLG 252
                  5666777777888887.47888889999999999762577789*************999877655 PP

>> TIGR02822  adh_fam_2: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   5.1   5.9e-08     2e-05      17     164 ..      24     177 ..      17     261 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 5.9e-08
    TIGR02822  17 lveeevprpgegellvrvracgvcrtdlhvsegdlpvhrervipghevvgevveagaaegefavgdrvgiawlrrtcgv.crycrrgaenlcpasryt...gwdadgg..yaeyttvpaafayrlptgyadeelapllcagiigyrallraelp 164
                   +e +v  p  ge+ v+v +  +c td++  +g  p      i ghe  + v ++g +    + gd v  ++  + c + c +c+    nlcp+ r t   g   dg   + +    p  + +   t  + + +a + ca i     l +a l 
  MMETSP1061-20121228|14432_1  24 EEEITVMPPKAGEVRVKVVSNALCHTDIYTLDGHDPEGLFPCILGHEAGCIVESVGEGVTSVQPGDHVIPCYTPQCCETsCVFCQSPKTNLCPKIRSTqgqGLMPDGTsrFVDSEGKPIFHFMGCSTMSEYTVIAEISCAKINKKADLHKACLF 177
                  45556777999*********************************************************999999988644**************998733344444431133333334333333333444445566666665555555555554 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   2.5e-05    0.0085      25      86 ..      32      91 ..      18      99 .. 0.76
   2 !    5.5   0.1    0.0062       2.1     147     200 ..     194     247 ..     150     268 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 2.5e-05
    TIGR02817 25 PkpkgrdllvevkavsvnPvdtkvrkkvapeaeelkilGwdaaGvvkavGeevtlfkvGdev 86
                 Pk++  +++v+v + +    d+       pe   + ilG++a  +v++vGe vt  ++Gd+v
  MMETSP1061-20121228|14432_1 32 PKAG--EVRVKVVSNALCHTDIYTLDGHDPEGLFPCILGHEAGCIVESVGEGVTSVQPGDHV 91
                 4333..444555444555666667778888888999************************99 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0062
    TIGR02817 147 gekralliiGaaGGvgsiliqlarqlteltviatasraesqewvkelGahavid 200
                   e+++ + + + G vg  ++q a+     ++ia    ++  e +k+lGa   ++
  MMETSP1061-20121228|14432_1 194 VETNSTVAVFGLGAVGLAVVQGAQMAGASRIIAVDVNPDKFEMAKQLGATDCVN 247
                  4556666777899************************************98776 PP

>> TIGR01202  bchC: chlorophyll synthesis pathway protein BchC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.043        15       3      86 ..      11      92 ..       9     127 .. 0.68
   2 !    8.4   0.3   0.00066      0.23     133     307 ..     183     380 ..     145     381 .. 0.64

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.043
    TIGR01202  3 kaivlsgpkq.lelrevelkepssedlvveiaysgistGteklllsGllPsfPglgyPlvPGyesvGrvvea.addvnf.rvGdrvf 86
                 ka+v   pk  ++ +e+++ +p  +++ v++   ++   t+   l G+ P      +P + G+e+ G +ve+ ++ v   ++Gd+v 
  MMETSP1061-20121228|14432_1 11 KALVARAPKVpMVEEEITVMPPKAGEVRVKVVSNAL-CHTDIYTLDGHDPEG---LFPCILGHEA-GCIVESvGEGVTSvQPGDHVI 92
                 566666665425567889999999999998875554.578888889987765...49******97.666665266666569999985 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00066
    TIGR01202 133 talhavaga..eekvlkdlivGhGalGrllarltvaaGaelpvvwetkaerrdiat...gyevldPekd.............arrdy..raiydasGdsslidtlverlakg.GeivlaGfyteplafdfvpafmkelrlriaaeW....qkedllavreliesGklsldklithkatasdaaeayatafsdpdclkmil 307
                  t l av  +  +e++  + + G Ga+G  + + + +aGa+  +  + ++ + ++a+   +   ++P++              +  d+  +  +d++G+ +++ + +e  ++g G   + G      +++  p      r+   + +     ++d+ +  e +  Gk+++d++ith+      ++    a+    cl+ ++
  MMETSP1061-20121228|14432_1 183 TGLGAVWNTckVETNSTVAVFGLGAVGLAVVQGAQMAGASRIIAVDVNPDKFEMAKqlgATDCVNPKTLgdvpvqkhiagtmT--DWgvDYSFDCTGNVEVMRSALECAHRGwGTSCIIGVAASGHEISTRPFQLVTGRIWKGTAFggfkSRTDVPKLVERMLNGKIKIDHFITHTFCGVAGTNQAVDALHSGKCLRAVV 380
                  44555544333567788899999999999999999999999999999999988886332456788887677888888877442..4311445788888888888888776654666666666665555544433333333322222111246777777777778999999999998666555555567888888887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 1482.94
//
Query:       MMETSP1061-20121228|14433_1  [L=770]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-113  379.0  32.7    1.6e-63  212.7  11.3    2.7  2  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
    6.7e-86  286.0   0.0    1.8e-85  284.7   0.0    1.6  1  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
    1.1e-16   57.7  21.2    4.5e-09   32.4   3.1    3.0  2  TIGR00845 caca: sodium/calcium exchanger 1
    3.4e-05   20.6   8.1    0.00083   16.1   0.1    2.4  2  TIGR00846 caca2: calcium/proton exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.0   5.8   5.9e-57   6.1e-54     457     609 ..     126     282 ..     109     293 .. 0.90
   2 !  212.7  11.3   1.6e-66   1.6e-63    1020    1199 ..     584     763 ..     574     769 .. 0.98

  Alignments for each domain:
  == domain 1    score: 181.0 bits;  conditional E-value: 5.9e-57
    TIGR00927 457 vvlhifGmlyvfvalaivcdeyfvpalGvit..dklqisedvaGatfmaaGGsapelftsliGvfishsnvGiGtivGsavfnilfviGtcalfsreilnltwwplfrdvsfyildlimlilf...fldsliawweslllllayalyvftmkwnkqle 609
                   +l+ +G+ly+f+alaivcde+fvpal  ++   +l++s dvaGat+maaGGsapel tsliG f   s++G GtivGsavfnilfviG c+l++r++l ltwwplfrd  +y + l+ml +f        i  wes +l+  y  y + m  nk+l 
  MMETSP1061-20121228|14433_1 126 TLLYCMGILYMFLALAIVCDEFFVPALEELSgpRRLNMSMDVAGATLMAAGGSAPELATSLIGTF-RQSEIGFGTIVGSAVFNILFVIGMCSLLARDVLTLTWWPLFRDSLYYTIGLVMLAVFtgfHTKNEIDLWESCVLFAMYLGYCLLMWQNKNLY 282
                  46899***********************9973359*****************************9.57*****************************************************9744256789********************9999985 PP

  == domain 2    score: 212.7 bits;  conditional E-value: 1.6e-66
    TIGR00927 1020 iylfllpivfplwltvpdvrrlearkffvitflGsilwiamfsylmvwwahqvGetiGiseeimGltilaaGtsipdlitsvivarkGlGdmavsssvGsnifditvGlplpwllfslinglqpvpvssnGlfcaivllflmllfvissialckwrmnkilGftmfllyfvfliisvmle 1199
                    y+  lp+vf l +tvpdv+r    k+  +tf+ si wi  fs++mv wa  vG+t  i  e+mGltilaaGts+pdl++svivar+G GdmavsssvGsnifdi vGlp+pw+l+s i   +pv + s+Gl  ++++l  m+++vi s+    w++ k+lG  mfl+y +fl+ +v+le
  MMETSP1061-20121228|14433_1  584 WYIICLPLVFVLTFTVPDVQRPGYGKWCYLTFIISIGWIGGFSFFMVDWAEIVGNTFKIPSELMGLTILAAGTSVPDLLSSVIVARRGQGDMAVSSSVGSNIFDILVGLPVPWMLYSAIYNAEPVKIGSEGLVRSLLILVGMIILVIGSVHCQGWKLTKLLGGIMFLFYILFLVQAVVLE 763 
                   5999***************************************************************************************************************************************************99*************************99 PP

>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.7   0.0   1.7e-88   1.8e-85       2     312 .]     128     755 ..     127     755 .. 0.76

  Alignments for each domain:
  == domain 1    score: 284.7 bits;  conditional E-value: 1.7e-88
    TIGR00367   2 llvigllilglilvivsaellvksltvia..eklgisdlviGvTvvaagtSlPElftsliavliaksdigigtvvGSnifNillvlglcallsreilvltkl.lkrdvsfllvvlillliflldgv......lesllllvllflyvvylkflvkverkqain................................................................................................................................dtlteeqvdenerq...............................................................................................................................................................................rkqitfllvllivg.........................ltllvvgsrllVdsavqiaetlgiseeiiGltilAaGTSlpeLvvsviaarkglgdlavgsvvGsNifdIlvglglpallat..irvkpvavsldalvlvivllllllivvilsialkrw.....lglillalYiay 312
                  l  +g+l+++l+l+iv++e++v++l++++  + l++s +v+G+T++aag+S+PEl tsli+++  +s+ig gt+vGS++fNil+v+g+c+ll+r +l+lt++ l+rd + + + l++l++f+ + +      +es  l+ +++ y + ++ +    +  ai+                                                                                                                                             +                                                                                                                                                                                            +                         + ++  +s ++Vd+a  +++t++i+ e++GltilAaGTS+p+L+ svi+ar+g gd+av+s+vGsNifdIlvgl++p++l+    + +pv + +++lv  ++ l+ ++i+vi s++ + w     lg i++++Yi++
  MMETSP1061-20121228|14433_1 128 LYCMGILYMFLALAIVCDEFFVPALEELSgpRRLNMSMDVAGATLMAAGGSAPELATSLIGTFR-QSEIGFGTIVGSAVFNILFVIGMCSLLARDVLTLTWWpLFRDSLYYTIGLVMLAVFTGFHTkneidlWESCVLFAMYLGYCLLMWQNKNLYK--AITgkvlvypdedeepeedartasngssgigrnddninrsneagenaeerstesnmqrqsskgsvqsskshaslashrsqrsyrgsdrstashphflwqgtfragilkllkdgdswadtagagmvskimgdA------------DyvfeqvdkdgnghidrvelrqlfdllecnassneledvflqldsnkdgvisrkeftewyfrseerimsqvrhvfdqidvdksntldkeelktllatldphvcdedvesaltemyrhgdpdeisfdefsewykhsmiyerqkqmieedmggvcdnlypptaggfrdwvwyiiclplV------------FvltftvpdvqrpgygkwcyltfiisIGWIGGFSFFMVDWAEIVGNTFKIPSELMGLTILAAGTSVPDLLSSVIVARRGQGDMAVSSSVGSNIFDILVGLPVPWMLYSaiYNAEPVKIGSEGLVRSLLILVGMIILVIGSVHCQGWkltklLGGIMFLFYILF 755
                  56789***********************76689*****************************96.789*******************************************9999999999765554777778888888888888877777766666..555668899999999999999988888888888888888888877666666666665555555555555555555555555555555555555555555555555555555555555555555555555550............055555555555555555555555555555555555555555555555666666666666666666666666666666666666666666666666666666666666666666777777788888888888888888888889999999999999999999995555555555550............44444555555555555555555555**********************************************************************************8889999********99999999999999988877777777779*********87 PP

>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   6.2   1.5e-10   1.5e-07      77     239 ..     128     268 ..      70     283 .. 0.76
   2 !   32.4   3.1   4.4e-12   4.5e-09     723     843 ..     581     706 ..     561     756 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 1.5e-10
    TIGR00845  77 vyfvalvylflGvsiiadrfma.sievitskekeivvkkpngettvvtvriwnetvsnltlmalGssaPeillsvievvgknfeaGdlGPstivGsaafnlfiiiaicvvviPdGevrkikhlrvffvtaawsvfayvwlylilavfspGvvevweglltllff 239
                  +y + ++y+fl ++i+ d f   ++e +           p   ++ +        v+  tlma G saPe+  s+i      f+  ++G +tivGsa fn++ +i++c ++  d  v ++    +f   + +     v l +   + ++ ++++we+ + + ++
  MMETSP1061-20121228|14433_1 128 LYCMGILYMFLALAIVCDEFFVpALEEL---------SGPRRLNMSM-------DVAGATLMAAGGSAPELATSLIG----TFRQSEIGFGTIVGSAVFNILFVIGMCSLLARD--VLTLTWWPLFR-DSLYYTIGLVMLAVFTGFHTKNEIDLWESCVLFAMY 268
                  5666667777777777766542133333.........2333333333.......47899****************96....69999**********************987654..55555555554.556666678888899999999999999988777544 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 4.4e-12
    TIGR00845 723 dyvmhfltvfwkvlfaf.vPPtdy..lg..GwacfvvsilliGlltaliGdlashfGctiglkdsvtavvfvalGtsvPdtfaskvaavqdkyadasiGnvtGsnavnvflGiGvawsi.aaiyhaa 843
                  d+v ++++++   +++f vP  +   +g   + +f++si  iG ++ ++ d a   G t  +   +  ++ +a GtsvPd ++s + a + +  d ++    Gsn  ++++G+ v w + +aiy a 
  MMETSP1061-20121228|14433_1 581 DWVWYIICLPLVFVLTFtVPDVQRpgYGkwCYLTFIISIGWIGGFSFFMVDWAEIVGNTFKIPSELMGLTILAAGTSVPDLLSSVIVARRGQ-GDMAVSSSVGSNIFDILVGLPVPWMLySAIYNAE 706
                  7788888887665444415554431122114689*****************************************************99987.699*********************9846888764 PP

>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   8.1e-07   0.00083     232     317 ..     133     219 ..     110     276 .. 0.74
   2 !    6.9   2.3   0.00049       0.5     243     329 ..     625     711 ..     607     760 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 8.1e-07
    TIGR00846 232 lLvvativvallaellvstlesvv..eslglskafiglilipivgnaaEhvtavivalknkldialgvalGSalqiallvvplvvlva 317
                  +L + +   +++ e+ v +le+++   +l++s  + g +l++  g a+E +t++i  ++ + +i  g ++GSa+  +l+v+ ++ l+a
  MMETSP1061-20121228|14433_1 133 ILYMFLALAIVCDEFFVPALEELSgpRRLNMSMDVAGATLMAAGGSAPELATSLIGTFR-QSEIGFGTIVGSAVFNILFVIGMCSLLA 219
                  344444445667899********944589*****************************8.579*****************99876665 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00049
    TIGR00846 243 laellvstlesvveslglskafiglilipivgnaaEhvtavivalknkldialgvalGSalqiallvvplvvlvawilgieldLnle 329
                   + ++v+  e v +++ ++  ++gl++++     ++ +++viva + + d+a+   +GS +  +l+  p+  ++  ++ +   ++++
  MMETSP1061-20121228|14433_1 625 FSFFMVDWAEIVGNTFKIPSELMGLTILAAGTSVPDLLSSVIVARRGQGDMAVSSSVGSNIFDILVGLPVPWMLYSAIYNAEPVKIG 711
                  56788888999999****************999*****************************9999988855444444333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.52
# Mc/sec: 1954.45
//
Query:       MMETSP1061-20121228|14437_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 747.94
//
Query:       MMETSP1061-20121228|14435_1  [L=694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.39
# Mc/sec: 2348.73
//
Query:       MMETSP1061-20121228|14438_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.35
# Mc/sec: 1470.74
//
Query:       MMETSP1061-20121228|14436_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 541.16
//
Query:       MMETSP1061-20121228|14440_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 1216.19
//
Query:       MMETSP1061-20121228|14441_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 601.87
//
Query:       MMETSP1061-20121228|14439_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.32
# Mc/sec: 1942.71
//
Query:       MMETSP1061-20121228|14443_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1338.75
//
Query:       MMETSP1061-20121228|14442_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2475.93
//
Query:       MMETSP1061-20121228|14444_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 2030.60
//
Query:       MMETSP1061-20121228|14446_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1891.84
//
Query:       MMETSP1061-20121228|14518_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 501.56
//
Query:       MMETSP1061-20121228|14527_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1541.29
//
Query:       MMETSP1061-20121228|14537_1  [L=671]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.7e-148  491.4   0.0   6.1e-148  491.0   0.0    1.1  1  TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   4.3e-131  435.7   0.0   5.4e-131  435.4   0.0    1.1  1  TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
    1.5e-94  315.4   0.0    2.1e-94  315.0   0.0    1.2  1  TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme
    3.4e-89  297.7   0.1    5.6e-89  297.0   0.1    1.3  1  TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO
    9.2e-80  266.3   0.1    1.2e-79  265.9   0.1    1.1  1  TIGR01578 MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
    5.5e-27   92.4   0.1    4.6e-26   89.4   0.0    1.9  2  TIGR04014 B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
    3.4e-22   76.6   0.0    5.2e-22   76.0   0.0    1.3  1  TIGR04013 B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
    7.7e-09   32.7   0.1    5.5e-06   23.3   0.0    2.2  2  TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW
    5.1e-08   30.0   0.0    1.3e-07   28.7   0.0    1.6  2  TIGR03471 HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
    3.4e-07   27.6   0.1    1.8e-06   25.2   0.0    1.9  2  TIGR03994 rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
    1.8e-06   24.6   0.2      0.002   14.5   0.1    2.1  2  TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ
    1.3e-05   22.3   0.0    1.9e-05   21.7   0.0    1.3  1  TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family
    1.9e-05   21.8   0.0    3.1e-05   21.1   0.0    1.2  1  TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase
  ------ inclusion threshold ------
      0.028   11.0   0.0      0.051   10.2   0.0    1.4  1  TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase
      0.029   11.6   0.1       0.26    8.4   0.1    2.1  2  TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme


Domain annotation for each model (and alignments):
>> TIGR00089  TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  491.0   0.0  2.2e-150  6.1e-148       1     423 [.     242     669 ..     242     671 .] 0.96

  Alignments for each domain:
  == domain 1    score: 491.0 bits;  conditional E-value: 2.2e-150
    TIGR00089   1 kvyietyGCqmNeadsevmaglLkeagyevtedee....eADvviiNTCavrekaeekviselkelaklkkk...akivvaGClaqkekeellkekpevdivlgtqeverllelieeaeekekevveelekekleelprsrseeklrafikiqeGCdkkCtyCivpsaRGrerSrslekileevkelvskgvkEivLlgqnvnaYGkdlegkskladLlkelekiegierirvtslhpkdvtdelieliaeeekvlkflhlplQsgsdeiLkrMrRkytreeyleiveklrakvpdvalstdiIVGFPgEteedFeetldlveevkfdklhvfkYspregtpaaelkdqvpeevkkeRlerLkelqkeiskeknkkyvGktlevLveeeekkkegelsgrtennklvvvegkeekeligkfvkvkikeak 423
                  ++++et+GCqmN adse+++g+L++ g++  +  +    + Dvvi+NTC++re+ae+kv+s+l+ +ak+k++     ivvaGC+aq+e+e ll+++pevd+v+g+q ++rl + +e + ++ ++v+ ++  + +e+  ++r+++k++a++++++GC+++C++Civp++RG e+Sr+le+i+ee+++lv++g+kE++Llgqn++aYG+d+  k+ ++dLlk   +++g +r+r++++hp+ ++  +++ i +++ v++++h+p+Qsgsd iL  M+R+++r++yl+iv+++r+k+pd+++s+d+IVGFPgEteedF++tl+l+eevkfd+++++ Yspr++tpaa++++q+p+evk++Rl+r++ l ke +ke++++++G+t+evLvee++ + + +++grt++n +v++eg+  + l g++v+v+i++ +
  MMETSP1061-20121228|14537_1 242 TYKLETMGCQMNLADSERIEGQLQSMGIRPLDADSdkgvDPDVVILNTCSIREHAESKVYSYLGPYAKRKRDgedVAIVVAGCVAQQESEALLRRVPEVDLVMGPQYANRLSDFFEDIANG-NQVIATEATHIMEDSSKPRRQSKVCAWVNVIYGCNERCAFCIVPTTRGVEQSRPLESIVEEIESLVAEGYKEVTLLGQNIDAYGRDMAPKKRFSDLLKTAGSVPGLKRLRFVTSHPRYMSLSVVDEILNTPTVCESIHIPFQSGSDAILASMGRGHNRKKYLHIVNRIRSKIPDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVNTAAYSPRPNTPAATWENQIPDEVKSDRLQRINVLVKEHAKERRARMMGRTVEVLVEERNVRIPTQVMGRTRHNYIVYFEGD-IDALRGELVNVEIDNCE 669
                  689**********************9999776544222268*****************************99999********************************************96.677777777899999****9********************************************************************9999****************************************************************************************************************************************************************************************************97.5789*********9876 PP

>> TIGR01574  miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  435.4   0.0    2e-133  5.4e-131       2     428 ..     243     669 ..     242     671 .] 0.94

  Alignments for each domain:
  == domain 1    score: 435.4 bits;  conditional E-value: 2e-133
    TIGR01574   2 lfiktyGCqmnvadsekmadlllakgye....ltedveeadvlllntCsvrekaeekvfgelGrfkklkkknadliiGvcGCvaselgekilkrapyvdlvlGtrniarleelieekltdkemvveisseesevaerlaevrnegkiksfvnimeGCdkfCtyCivPytrGeeisrdlddilqevaklaekGvkeitLLGqnvnayrGkdfegktvsfadLleelavkddierirftsshPkdldddlievlakesklvkllhlPvqsGssevLklmkrsytreeylelvrklkeavPnvslstdiivgfPgeteedfeetldllrevefdsafsfkyskregtpaadmkddvpeevkkerLqrlqalvneialkkvkkregktlkvLveeesrnnpeelaGrteknklvnleGkkd.liGkfvdvkikevk 428
                  + ++t+GCqmn adse++++ l++ g +     +++  + dv++lntCs+re+ae+kv++ lG + k k+++ d+ i v+GCva+++ e +l+r p vdlv+G++  +rl++  e+       v  i  e ++++e  +++r ++k+ ++vn+++GC++ C++CivP trG e sr+l+ i++e++ l+++G+ke+tLLGqn++ay G+d+  k   f+dLl+   ++ +++r+rf++shP+ ++  +++ + +++ +++++h+P qsGs+ +L  m r+++r++yl++v++++  +P++s+s+d+ivgfPgeteedf++tl+l++ev+fd++ +  ys+r+ tpaa+ ++++p+evk++rLqr++ lv+e a+++  +++g+t++vLvee++ + p++++Grt +n +v +eG  d l G +v+v+i + +
  MMETSP1061-20121228|14537_1 243 YKLETMGCQMNLADSERIEGQLQSMGIRpldaDSDKGVDPDVVILNTCSIREHAESKVYSYLGPYAKRKRDGEDVAIVVAGCVAQQESEALLRRVPEVDLVMGPQYANRLSDFFEDIANGN-QV--IATEATHIMEDSSKPRRQSKVCAWVNVIYGCNERCAFCIVPTTRGVEQSRPLESIVEEIESLVAEGYKEVTLLGQNIDAY-GRDMAPK-KRFSDLLKTAGSVPGLKRLRFVTSHPRYMSLSVVDEILNTPTVCESIHIPFQSGSDAILASMGRGHNRKKYLHIVNRIRSKIPDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVNTAAYSPRPNTPAATWENQIPDEVKSDRLQRINVLVKEHAKERRARMMGRTVEVLVEERNVRIPTQVMGRTRHNYIVYFEGDIDaLRGELVNVEIDNCE 669
                  7799********************99862211334445789************************************************************************99983332.22..5566677888899*******************************************************************.***9876.58********************************************************************************************************************************************************************************************************556********9976 PP

>> TIGR01579  MiaB-like-C: MiaB-like tRNA modifying enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.0   0.0   7.6e-97   2.1e-94       1     416 []     245     665 ..     245     665 .. 0.91

  Alignments for each domain:
  == domain 1    score: 315.0 bits;  conditional E-value: 7.6e-97
    TIGR01579   1 ietlGCrvNqyeseslkaeliqkgyevvrddek....adviiiNtCtVTakadskarkli...rrlkrenpkakiivtGCyaqlepkel.aelkevvlvlgnkeKdkiskllsallesavrvkekslveekeveefeevaprfeektrafvkvqdGCnkaCsyCiIpfaRGrsrSvelekvleqvkalvakgykEvvltGvnlssYgedlenglslakLlekilkieglkriRlsSlepeevdeelleliasekklcphlHlslQsgsdkvLkrmrRkytrddilklveklrsvrpelalgtDiIvgfPgEteedfqetlrlvkelelsklHiFpySaRegTkaaamdakveetiakeRvkalkelaekvkqevlkkllgkelevlvekskaee..vltgkseeylkvkvesekkvaagellkvri 416
                  +et+GC++N  +se ++ +l+ +g   + +d+      dv+i+NtC++ ++a+sk+ +++    + kr   ++ i+v+GC+aq+e++ l   ++ev+lv+g ++ +++s++ + +     ++ ++++++e +    ++ +pr + k+ a+v v  GCn++C++Ci+p +RG  +S++le+++e++++lva+gykEv l G n+ +Yg+d+  ++++ +Ll++  +++glkr+R    +p  +  ++++ i +++ +c+++H+  Qsgsd +L  m R+++r+++l++v+++rs+ p+ ++++D+IvgfPgEteedfq+tl l++e+++ ++    yS+R++T+aa+ +++++++++ +R+++++ l ++  +e + +++g++ evlve+++ +    ++g++ +   v +e++ ++  gel++v+i
  MMETSP1061-20121228|14537_1 245 LETMGCQMNLADSERIEGQLQSMGIRPLDADSDkgvdPDVVILNTCSIREHAESKVYSYLgpyAKRKRDGEDVAIVVAGCVAQQESEALlRRVPEVDLVMGPQYANRLSDFFEDI-----ANGNQVIATEATHIMEDSSKPRRQSKVCAWVNVIYGCNERCAFCIVPTTRGVEQSRPLESIVEEIESLVAEGYKEVTLLGQNIDAYGRDMAPKKRFSDLLKTAGSVPGLKRLRFVTSHPRYMSLSVVDEILNTPTVCESIHIPFQSGSDAILASMGRGHNRKKYLHIVNRIRSKIPDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVNTAAYSPRPNTPAATWENQIPDEVKSDRLQRINVLVKEHAKERRARMMGRTVEVLVEERNVRIptQVMGRTRHNYIVYFEGDIDALRGELVNVEI 665
                  68************************9999887788889********************93323456667899**********9988751689******************9733.....3444455555555555666899999*****************************************************************99*********************************************************************************************************************************************************************************9987544566776666667788877788888888875 PP

>> TIGR01125  TIGR01125: ribosomal protein S12 methylthiotransferase RimO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.0   0.1     2e-91   5.6e-89       4     424 ..     245     667 ..     242     670 .. 0.94

  Alignments for each domain:
  == domain 1    score: 297.0 bits;  conditional E-value: 2e-91
    TIGR01125   4 ivsLGCpknlvDsevllgkLreaGye.vvaeve...daDvvivntCafiedakeesleailellda.....kkkvivtGClverykeelkeeipevkallGsedveeileaieelesgkdkvaekslieeeevkrvkltprhyaYlkvaeGCnkrCafCiiPklrGklrsrkieeilkeakrLvdegvkeiiliaqdttaYGvDlktdreaklaeLlekLekle.ikWirllYlyPdelvdevielmaesekvlpYlDiPlqhasdkiLklmrrpksaekqldlieklrekvpelvlrstfivGfPgeteedfqeLldfveearldklGvftysdeegtdaaeLpdavpeevkeerlerlmalqqrisakkleelvGkklevlidekeeetdleligrtlaeaPevDgvvyvkgakelvkigdilkvkiee 424
                  + ++GC+ nl+Dse++ g+L++ G   ++a+ +   d Dvvi+ntC+  e+a++   ++++  ++      +  ++v GC++++ +e l +++pev+ ++G++  + + +  e+  +g++ +a++ +  +e+  + + + +  a++ v  GCn+rCafCi+P  rG ++sr++e+i++e+++Lv+eg ke+ l+ q++ aYG D+    ++++++Ll++ ++++  k +r++  +P  ++ +v++ + +++ v + + iP+q  sd iL  m r+++++k l++++++r+k+p++ + + +ivGfPgeteedfq+ l  +ee ++d +    ys+  +t aa  ++++p+evk +rl+r+  l ++ ++++ ++++G+++evl++e +    ++++grt ++      +vy +g +  +  g++++v+i++
  MMETSP1061-20121228|14537_1 245 LETMGCQMNLADSERIEGQLQSMGIRpLDADSDkgvDPDVVILNTCSIREHAESKVYSYLGPYAKRkrdgeDVAIVVAGCVAQQESEALLRRVPEVDLVMGPQYANRLSDFFEDIANGNQVIATEATHIMEDSSKPRRQSKVCAWVNVIYGCNERCAFCIVPTTRGVEQSRPLESIVEEIESLVAEGYKEVTLLGQNIDAYGRDMA--PKKRFSDLLKTAGSVPgLKRLRFVTSHPRYMSLSVVDEILNTPTVCESIHIPFQSGSDAILASMGRGHNRKKYLHIVNRIRSKIPDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVNTAAYSPRPNTPAATWENQIPDEVKSDRLQRINVLVKEHAKERRARMMGRTVEVLVEERNVRIPTQVMGRTRHN-----YIVYFEG-DIDALRGELVNVEIDN 667
                  5689********************85345555423368************************9998777667789***************************************99998888888888888889999999******************************************************************..9999***********999999999**********************************************************************************************************************************************************************9875.....4777777.4466778888887765 PP

>> TIGR01578  MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.9   0.1   4.2e-82   1.2e-79       4     411 ..     245     668 ..     242     671 .] 0.87

  Alignments for each domain:
  == domain 1    score: 265.9 bits;  conditional E-value: 4.2e-82
    TIGR01578   4 vetyGCalnkadseiiknklkkaGyelve....kaeeAdlailntCtVkkktEdkllari...kelarkgke..vvvagcvpkaqkekvkdaesele.vlgvkaierlvelveetlk.kkvlersvaktllkevkvlkne.lieiipinqGClskCsyCitkiArGklaSyppEkivekarelvaeGakeikltsqDtaaYGkDiGer..LpeLlrliteiegefrlRVGmmnpknvl.eildelievfqsekvykfLHlPvqSgsdsvLkemkReytvddfedivekfrerledltlstDiivGfptEtdddfeetlellrklrpekinvtkfspRpgteaaklk.rldakikkkrskaltklkeevllekkenliGkrekVlvte...egvGevlkdeddatvqvviseke..leigefakveitga 411
                  +et GC +n adse i+++l+++G + ++    k  + d++ilntC +++++E k+   +    + +r g +  +vvagcv++++ e+    ++e++ v+g +  +rl ++ e++ + ++v+ ++ ++ + ++ k+++++ +   +++  GC+++C++Ci+   rG  +S+p E ive++ +lvaeG ke+ l +q+  aYG+D+  +   ++Ll+++  ++g  rlR    +p ++   ++de   +++ + v + +H+P qSgsd +L++m R ++++++ +iv+++r +++d ++s D+ivGfp+Et++df++tl l+++++++++n + +spRp+t+aa  + +++ ++k +r ++++ l +e  +e +  ++G++++Vlv e       +v+ ++++ +  +v +e +     ge  +vei + 
  MMETSP1061-20121228|14537_1 245 LETMGCQMNLADSERIEGQLQSMGIRPLDadsdKGVDPDVVILNTCSIREHAESKVYSYLgpyAKRKRDGEDvaIVVAGCVAQQESEALLRRVPEVDlVMGPQYANRLSDFFEDIANgNQVIATEATHIMEDSSKPRRQSkVCAWVNVIYGCNERCAFCIVPTTRGVEQSRPLESIVEEIESLVAEGYKEVTLLGQNIDAYGRDMAPKkrFSDLLKTAGSVPGLKRLRFVTSHPRYMSlSVVDE---ILNTPTVCESIHIPFQSGSDAILASMGRGHNRKKYLHIVNRIRSKIPDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVNTAAYSPRPNTPAATWEnQIPDEVKSDRLQRINVLVKEHAKERRARMMGRTVEVLVEErnvRIPTQVMGRTRHNY--IVYFEGDidALRGELVNVEIDNC 668
                  89***********************9887444466789*****************987652224555666541179***************99998736788999**********9966777766666666777777665166789***********************************************************86545*************************986145555...5778*******************************************************************************************9975279**************************************65444578888888888..66666553377888889888665 PP

>> TIGR04014  B12_SAM_MJ_0865: B12-binding domain/radical SAM domain protein, MJ_0865 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.15        42      18      96 ..     261     345 ..     256     381 .. 0.63
   2 !   89.4   0.0   1.7e-28   4.6e-26     163     369 ..     390     598 ..     382     648 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.15
    TIGR04014  18 gGilrdkGhsvelrrkldklksdvvllslfstlhlldeair....elvkkvre.kggkvivgGpvsaa.Pelvleeldvdlvvvg 96 
                   G l+  G ++  + + + ++ dvv+l   s  +  + ++       +k++r+ ++  ++v+G+v+++  e +l+++    +v+g
  MMETSP1061-20121228|14537_1 261 EGQLQSMGIRPLDADSDKGVDPDVVILNTCSIREHAESKVYsylgPYAKRKRDgEDVAIVVAGCVAQQeSEALLRRVPEVDLVMG 345
                  5566666666544444445777888888877777766666623323344433313446789****87527999999875555554 PP

  == domain 2    score: 89.4 bits;  conditional E-value: 1.7e-28
    TIGR04014 163 iethrGclGactfcqvPrffGrrirsreleeiveevkelkrkGarrlaisGGtgslygskeaidkeafiellkklsevlGkknl....svPdirvdlvddeileaireytiGWvffGiesGsdrilrlmkkGitvdkvleavelarev..gvkvaGsfivgyPgeteedyeatkdlleelelddvfvsiaePiPgtelaelvlelpedenpvf 369
                  ++   Gc  +c+fc vP   G + +sr+le+ivee+  l ++G + +++ G     yg +    k+ f +llk+  +v G k l    s P      v deil++        +    +sGsd il  m +G +++k l+ v++ r+   +  ++   ivg+Pgeteed++ t  l+ee+++d v  +   P P t+ a    ++p++ +   
  MMETSP1061-20121228|14537_1 390 VNVIYGCNERCAFCIVPTTRGVE-QSRPLESIVEEIESLVAEGYKEVTLLGQNIDAYGRDM-APKKRFSDLLKTAGSVPGLKRLrfvtSHPRYMSLSVVDEILNTP--TVCESIHIPFQSGSDAILASMGRGHNRKKYLHIVNRIRSKipDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVNTAAYSPRPNTPAATWENQIPDEVKSDR 598
                  56667*************99976.8*********************************988.78999*************99983333445555555556666543..3345789999**************************9986336788899****************************************9999888887755433 PP

>> TIGR04013  B12_SAM_MJ_1487: B12-binding domain/radical SAM domain protein, MJ_1487 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   1.9e-24   5.2e-22     138     373 ..     375     606 ..     280     612 .. 0.78

  Alignments for each domain:
  == domain 1    score: 76.0 bits;  conditional E-value: 1.9e-24
    TIGR04013 138 ldkyppfseklklfgpiEitRGCpygCayCqtprlfgkkvRHRsiesivkyakelvdkgrkdiRfitpnalaYGskdgvkpnlekveeLLsslkk..kkkkriffGtFPsevRPefvteealelikkyvanrrlviGaQsgsdrvLkaikRgHtvedvveavelalea..gltpvvDfIlGlPgeteedqeatlelikklvkkgakvhaHtfmpLPgtp...lenakpsklseevkkelgkla 373
                   d+ +p   + k+ + + +  GC  +Ca+C +p+  g     R++esiv+  ++lv++g k++ ++  n  aYG   ++ p+ ++   LL++  +    k+  f+ + P  +   +v +   e++++ +  ++++i  Qsgsd++L ++ RgH+ ++  + v+ +++   +   + D+I+G+Pgeteed + tl+l++++   + +v    + p P tp   +en+ p +++++  + ++ l+
  MMETSP1061-20121228|14537_1 375 EDSSKPRR-QSKVCAWVNVIYGCNERCAFCIVPTTRGV-EQSRPLESIVEEIESLVAEGYKEVTLLGQNIDAYGR--DMAPK-KRFSDLLKTAGSvpGLKRLRFVTSHPRYMSLSVV-D---EILNTPTVCESIHIPFQSGSDAILASMGRGHNRKKYLHIVNRIRSKipDASISADVIVGFPGETEEDFQDTLSLMEEVKF-D-TVNTAAYSPRPNTPaatWENQIPDEVKSDRLQRINVLV 606
                  34555544.5688999999***************9998.578*********************************..44554.6788999998886445666788888765544333.2...46777888899*************************999999887544888899***********************865.4.69999999999998444666667777766666666555 PP

>> TIGR04107  rSAM_HutW: putative heme utilization radical SAM enzyme HutW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.1    0.0015       0.4      17      56 ..     363     403 ..     353     425 .. 0.87
   2 !   23.3   0.0     2e-08   5.5e-06     157     240 ..     501     585 ..     492     648 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0015
    TIGR04107  17 rpveeeelqevwqellaeaekakrllYihiPF.CrkrClfC 56 
                  ++v ++e+++++++ ++  +++k ++++++ + C++rC+fC
  MMETSP1061-20121228|14537_1 363 NQVIATEATHIMEDSSKPRRQSKVCAWVNVIYgCNERCAFC 403
                  5666778888888888888999*******9999******** PP

  == domain 2    score: 23.3 bits;  conditional E-value: 2e-08
    TIGR04107 157 iGvQsfdtevRrrlgRlddreevlerleeLs.aldraavviDLlyGLpgqteeiweeDleivaelgldGvdlYaLnllpgtplak 240
                  i  Qs ++++  ++gR ++r++ l+ ++++  +  +a++ +D + G+pg tee++++ l+ ++e++ d v++ a    p+tp a+
  MMETSP1061-20121228|14537_1 501 IPFQSGSDAILASMGRGHNRKKYLHIVNRIRsKIPDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVNTAAYSPRPNTPAAT 585
                  5579999**********************9626789**********************************999988888887654 PP

>> TIGR03471  HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       3.3   8.9e+02      94     132 ..     313     351 ..     283     365 .. 0.75
   2 !   28.7   0.0   4.7e-10   1.3e-07     205     381 ..     395     581 ..     389     597 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 3.3
    TIGR03471  94 anPkvkiglvGakvavepekslkeaeaidfvareefdyt 132
                     +v i++ G     e+e  l+  +++d+v+  ++   
  MMETSP1061-20121228|14537_1 313 DGEDVAIVVAGCVAQQESEALLRRVPEVDLVMGPQYANR 351
                  445677888888888888888999999999987666554 PP

  == domain 2    score: 28.7 bits;  conditional E-value: 4.7e-10
    TIGR03471 205 GckskctfclwPqtvgGhkyrtrsaesvieevkl.akelfpevkelffdddtftdd...keraeeiak......klkklgvtwscnakanvdyetlkvlke.....nGlrlllvGyesGdqqilknikkGlkvevarkftkdckk.l.GlkvhGtfilGlPgetretirktiefakeldpetiqvslaapyPGt 381
                  Gc+ +c+fc+ P t g ++   r  es++ee++  + e + ev  l  + d++  d   k+r  ++ k      +lk+l +  s        y +l v+ e     + +  + + ++sG++ il ++ +G + ++  + ++  +  +   ++  + i+G+Pget+e  + t++   e++ +t++ +  +p P t
  MMETSP1061-20121228|14537_1 395 GCNERCAFCIVPTTRGVEQS--RPLESIVEEIESlVAEGYKEVTLLGQNIDAYGRDmapKKRFSDLLKtagsvpGLKRLRFVTS-----HPRYMSLSVVDEilntpTVCESIHIPFQSGSDAILASMGRGHNRKKYLHIVNRIRSkIpDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVNTAAYSPRPNT 581
                  9*************998875..578999***98625677899999999999998872224555555441111112333333333.....334555555443222225689999*****************98887777766655313367899********************************999999988 PP

>> TIGR03994  rSAM_HemZ: coproporphyrinogen dehydrogenase HemZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.38     1e+02      81     130 ..     382     439 ..     357     449 .. 0.61
   2 !   25.2   0.0   6.4e-09   1.8e-06     200     271 ..     498     570 ..     488     614 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.38
    TIGR03994  81 yeeeyslYvgiPF.CptrClYCsFt.......sapiekakkkveeyldallkeleava 130
                   +++++ +v + + C  rC++C          s+p+e++ +++e+ + + +ke++ ++
  MMETSP1061-20121228|14537_1 382 RQSKVCAWVNVIYgCNERCAFCIVPttrgveqSRPLESIVEEIESLVAEGYKEVTLLG 439
                  3667888888665599******875111122245555555666666666666666555 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 6.4e-09
    TIGR03994 200 RisinPqtmndktLkliGRkHtvedvveafklarel.GfdninmDlivGLpgetleeveetleevkklaPesl 271
                   i i  q+ +d +L  +GR H+ ++  ++ + +r+     +i  D+ivG pget+e++++tl+ +++++ + +
  MMETSP1061-20121228|14537_1 498 SIHIPFQSGSDAILASMGRGHNRKKYLHIVNRIRSKiPDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTV 570
                  577888999*********************99997615568*********************99999887766 PP

>> TIGR03904  SAM_YgiQ: uncharacterized radical SAM protein YgiQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1   7.4e-06     0.002     279     337 ..     372     429 ..     285     436 .. 0.83
   2 !    8.1   0.0   0.00064      0.18     392     550 ..     457     613 ..     449     619 .. 0.59

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 7.4e-06
    TIGR03904 279 HpsykkkkipaleeikfsvtshrGCfGgCsFCaiteHqgriiqsRseesileEvekltk 337
                  H + +++k +  +++   v++  GC   C+FC + + +g   qsR  esi+eE+e+l++
  MMETSP1061-20121228|14537_1 372 HIMEDSSKPRRQSKVCAWVNVIYGCNERCAFCIVPTTRGV-EQSRPLESIVEEIESLVA 429
                  5555555556667778889999************999995.59************9975 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.00064
    TIGR03904 392 ellrkvrklkgvkkv.fiasGiRyDllledkeeeylkelvkhhvsGqlkvAPEhvedkvlklmkKpgievyekfkekfeklskkagkkqylvpylisahPgctledmvelaeylkklklkpeqvqdftPtPmtlstamyytgldp.....ltkekvyvaksekek 550
                  +ll+++ +++g+k++ f++s  Ry  l   +e      l +  v   +++     +d++l+ m++ +++  +k+ +  +++  k+  +  + + +i ++Pg t+ed ++  +++++ k+++ +  ++ P P t +++      d      l++ +v v++++ke+
  MMETSP1061-20121228|14537_1 457 DLLKTAGSVPGLKRLrFVTSHPRYMSLSVVDE-----ILNTPTVCESIHIPFQSGSDAILASMGRGHNR--KKYLHIVNRIRSKIP-DASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVNTAAYSPRPNTPAATWENQIPDEvksdrLQRINVLVKEHAKER 613
                  55555666666655435555555544333322.....23334555566666666667777777665543..344444444433333.3445566799************************************98765433323322222344444444444444 PP

>> TIGR01212  TIGR01212: radical SAM protein, TIGR01212 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   7.1e-08   1.9e-05     140     211 ..     498     571 ..     397     575 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 7.1e-08
    TIGR01212 140 wvelGlqtahektlkkinRghdladyveavkkvkkr..gikvcshlivgLPgedreevletakivaeldvdgik 211
                  ++ +  q+  +  l  + Rgh+  +y ++v++++ +  +  + + +ivg Pge+ e++ +t+ ++ e++ d++ 
  MMETSP1061-20121228|14537_1 498 SIHIPFQSGSDAILASMGRGHNRKKYLHIVNRIRSKipDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVN 571
                  6777889999**********************998755789***************************999885 PP

>> TIGR00539  hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.1e-07   3.1e-05     116     209 ..     501     595 ..     494     611 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.1e-07
    TIGR00539 116 lGvqsfedDkLeklgrvhkakevasavelak.ksGlenislDLmyglPlqtleelkeelklaleLdaehlsvYaLivepntvlekrakklpddea 209
                  +  qs  d  L  +gr h++k+    v++++ k+   +is D++ g P++t+e+ ++ l l  e++ + + + a +  pnt  +   +++pd+ +
  MMETSP1061-20121228|14537_1 501 IPFQSGSDAILASMGRGHNRKKYLHIVNRIRsKIPDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVNTAAYSPRPNTPAATWENQIPDEVK 595
                  55799999**********************94577789*****************************9999999999999999988888887644 PP

>> TIGR00538  hemN: oxygen-independent coproporphyrinogen III oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00019     0.051     192     247 ..     526     582 ..     477     617 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00019
    TIGR00538 192 kleklre.agfesinldliyGlPkqtkesfektlekvlelnPdrlavfnyayvPtvk 247
                   ++++r  +   si  d+i G+P  t+e f+ tl  + e++ d + + +y+  P   
  MMETSP1061-20121228|14537_1 526 IVNRIRSkIPDASISADVIVGFPGETEEDFQDTLSLMEEVKFDTVNTAAYSPRPNTP 582
                  45666641445699*****************************99999888777654 PP

>> TIGR02493  PFLA: pyruvate formate-lyase 1-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.29        79     179     229 ..     192     242 ..     190     248 .. 0.89
   2 ?    8.4   0.1   0.00096      0.26      19      58 ..     390     427 ..     387     436 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.29
    TIGR02493 179 laelvkklknvervelLpyhklgvnkweelgieYkledvkepekeelekvk 229
                  l ++++ + +v+r+  L   k +++ + ++g +  l ++++ ++ee ++++
  MMETSP1061-20121228|14537_1 192 LVQICDVMADVRRMSTLKQRKQSKHGYGKSGARVALAGINPGSDEEKKDLT 242
                  67899999********************************99999887765 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00096
    TIGR02493  19 vvflqGcalrCqyChnpDtwklkggtevtveellkevkky 58 
                  v ++ Gc+ rC++C  p t   ++  +  +e++++e++++
  MMETSP1061-20121228|14537_1 390 VNVIYGCNERCAFCIVPTTRGVEQ--SRPLESIVEEIESL 427
                  55789************9998887..67889999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.45
# Mc/sec: 1968.10
//
Query:       MMETSP1061-20121228|14559_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1811.85
//
Query:       MMETSP1061-20121228|14581_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0074   12.6   0.0       0.01   12.1   0.0    1.2  1  TIGR02477 PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase


Domain annotation for each model (and alignments):
>> TIGR02477  PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.5e-06      0.01     220     253 ..     167     200 ..     145     204 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.5e-06
    TIGR02477 220 kvyseligniarDalsakkyyhFiklmGrsashi 253
                   +y +++g ++r +lsa+ yyh   +mG  a ++
  MMETSP1061-20121228|14581_1 167 NLYQQVLGRVCRKSLSAEVYYHLNSMMGSDALFV 200
                  68**************************999766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 1227.01
//
Query:       MMETSP1061-20121228|14602_1  [L=679]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.44
# Mc/sec: 2036.83
//
Query:       MMETSP1061-20121228|14609_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       257  (0.0626524); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.51
# Mc/sec: 1327.66
//
Query:       MMETSP1061-20121228|14613_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 2435.41
//
Query:       MMETSP1061-20121228|14620_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1684.18
//
Query:       MMETSP1061-20121228|14641_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 269.26
//
Query:       MMETSP1061-20121228|14647_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-16   58.7   0.1    2.4e-16   57.8   0.0    1.4  1  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
  ------ inclusion threshold ------
        4.3    3.5  11.4        1.4    5.1   0.0    2.1  2  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.8   0.0   1.2e-19   2.4e-16      27     143 ..      89     206 ..      80     214 .. 0.91

  Alignments for each domain:
  == domain 1    score: 57.8 bits;  conditional E-value: 1.2e-19
    TIGR03665  27 tkvkleidseegevkveeeeedplkvlkarevvkAigrGfspekAlkLldddkvLevidlkelaksknelkrikgriIGeeGktrkiieeltgvkisvygktvsiiGeieq.vkiare 143
                  + ++l++ + + +v+ +++++dp+ +lkar+++k ++r   + +Alk+l+d+ v +++++  l ++k+++ + + r++G+eG t k +e +tg  i v+g+tvsi+G++ q +k ar+
  MMETSP1061-20121228|14647_1  89 IACELNLVEGSMTVRTTSKTSDPYIILKARDLLKLLSRSIPVAQALKILNDEWVCDIVKIGGLVRNKERFVKRRQRLLGQEGSTLKALELVTGCFILVQGNTVSIMGQTYQgLKQARN 206
                  56788888888899999******************************************************************************************86442666665 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   0.0   0.00067       1.4     217     241 ..     163     187 ..     152     209 .. 0.86
   2 ?   -1.2   6.3     0.058   1.2e+02      57     126 ..     291     360 ..     223     372 .. 0.64

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.00067
    TIGR03319 217 GRiiGreGRniralEtltGvdliiD 241
                   R++G+eG  ++alE +tG  +++ 
  MMETSP1061-20121228|14647_1 163 QRLLGQEGSTLKALELVTGCFILVQ 187
                  599****************988876 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.058
    TIGR03319  57 keevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeee 126
                   ee++k ++ + k+ +++ + l+k+++rl++ e++  rk+e+ ++k+e +++   +l++ +k+++++++ 
  MMETSP1061-20121228|14647_1 291 SEEQRKSQKLAVKKEQAKLTSLEKRKRRLEEDETAPLRKTENKRNKKEPTTNDYVDLQAFKKKIKNRSKA 360
                  3333333333334444444555555566666666655666666666666666666777777777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.09s 00:00:00.31 Elapsed: 00:00:00.30
# Mc/sec: 1645.46
//
Query:       MMETSP1061-20121228|14659_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1528.87
//
Query:       MMETSP1061-20121228|14651_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-52  174.8   0.0    8.2e-52  174.4   0.0    1.1  1  TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
    5.6e-10   36.4   0.0    3.6e-09   33.7   0.0    1.9  1  TIGR00191 thrB: homoserine kinase
     0.0031   14.8   0.0     0.0068   13.7   0.0    1.5  2  TIGR00549 mevalon_kin: mevalonate kinase
  ------ inclusion threshold ------
      0.012   12.8   0.0       0.11    9.7   0.0    2.0  2  TIGR01920 Shik_kin_archae: shikimate kinase


Domain annotation for each model (and alignments):
>> TIGR00154  ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.4   0.0     8e-55   8.2e-52       4     259 ..     126     391 ..     123     412 .. 0.85

  Alignments for each domain:
  == domain 1    score: 174.4 bits;  conditional E-value: 8e-55
    TIGR00154   4 vleapaKiNlfLeilgkrpdgyHelqtllqlidlgdkieisvke......dddirllkgdedvenee.NliyrAakllknklksklkskkgvnIeldKniPmaaGlgGGSsdAaavLvgLnqlwnlnLsleeLaelgaelGaDvpffvsgkaalAtgrGEiienle..epaekwvvlakpsvsvsTavvyqayk...Lpentskrakllkk.ieekllkklks.elkNdlekvvlkahqevaqvlkvlkea.gaakellsGsGaavFalvd 259
                   l +p KiNlfL i +kr+dg+H+l +l+q i +gd +e++  e      ++    +++ + v+ +  Nl+ rA+ l+++k      +k   + +l K++P +aGlgGGS++Aa+++ g n+l     sle++ e +  lG+D+ ff+s+++a+ tgrGEi+++++   p+ +++ ++kp++ +sT+ v++a+    L +  + ++ ll +  + +  +++++  + Ndle ++    +   ++++ l+++ g + +++sGsG+++F   +
  MMETSP1061-20121228|14651_1 126 ELFSPCKINLFLRIIRKREDGFHDLASLFQAIGFGDSLELTPLEetsedeEGSDEFTCNMPGVPVDStNLVLRALDLMREKTG----VKMYFKTNLVKQVPAQAGLGGGSANAATAMWGANELMGRPASLEQMIEWSGALGSDITFFLSQGTAYCTGRGEILTPIDppLPTGTKICIVKPDIGLSTPSVFKALDydeLSKMDPDDV-LLPAfLDTEGVENVSEdCYVNDLEPPAFRCVPRLGELKESLQKVaGFQHVMMSGSGTSIFCIGE 391
                  5679**********************************98644321111134457899***********************99....777888899*********************************************************************744456789******************99444555556666.66552456666666551589*********************9872557778*********8654 PP

>> TIGR00191  thrB: homoserine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   3.5e-12   3.6e-09      44     270 ..     178     395 ..     153     410 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 3.5e-12
    TIGR00191  44 leaegegvekipkesdkNliyqvakkvlkklgkrvkpvkltvekeiplgrGLGSSaaaivaaviaanelaglklskeelldlalllEgHpDNvapallGGlqlavkeddllevlkvPsgsklkvvlviPnievsTaeaRavLPkaysrqdlvfnlshlavlvtAlvskd.kadllaiamkDrvhqpyRekliPelteik.qaakekgalgitlSGaGptilalaeeeke 270
                    + + ++ ++p + + Nl+ +++  + +k+g +   +k ++ k++p+  GLG  +a  + a+  anel+g + s e++++  ++l      ++  l  G    + + ++l  ++ P  +  k+ +v P i +sT        ka ++ + + ++    vl  A+   +  +++ + +    + +p   + +P l e+k    k +g   + +SG+G +i+ + e e+ 
  MMETSP1061-20121228|14651_1 178 SDEFTCNMPGVPVD-STNLVLRALDLMREKTGVK-MYFKTNLVKQVPAQAGLGGGSANAATAMWGANELMGRPASLEQMIEWSGALGS---DITFFLSQGTAYCTGRGEILTPIDPPLPTGTKICIVKPDIGLSTPSVF----KALDYDE-LSKMDPDDVLLPAFLDTEgVENVSEDCYVNDL-EPPAFRCVPRLGELKeSLQKVAGFQHVMMSGSGTSIFCIGEPEDR 395
                  33334445679999.89*****************.89**********************************************99975...79****************999999999999**************8755....5555554.57788888999999988767777776665555.6667889********445567899999***********9987773 PP

>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0         1   1.1e+03     168     190 ..      18      40 ..      12      48 .. 0.76
   2 !   13.7   0.0   6.6e-06    0.0068      63     126 ..     180     258 ..     149     263 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1
    TIGR00549 168 alslviadtgvsrsTkelVakVr 190
                  +l + +  ++ s++T +lV++++
  MMETSP1061-20121228|14651_1  18 ELIFYVETSKHSENTDHLVQELK 40 
                  46678888899999999998876 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 6.6e-06
    TIGR00549  63 e.............syiaavlskleekkeaa..lkveieseipigaGLGSSAavavaliaalaalfgselskeelakla 126
                  e             ++++++l+ ++ek+  +  +k ++  ++p++aGLG   a a+  +   ++l+g+++s e++++++
  MMETSP1061-20121228|14651_1 180 EftcnmpgvpvdstNLVLRALDLMREKTGVKmyFKTNLVKQVPAQAGLGGGSANAATAMWGANELMGRPASLEQMIEWS 258
                  2444455555555589999*********99999***************9888888888888999**********99996 PP

>> TIGR01920  Shik_kin_archae: shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0    0.0001      0.11      48      94 ..     191     237 ..     162     258 .. 0.84
   2 ?    0.6   0.0     0.062        64     229     256 ..     373     401 ..     365     410 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.0001
    TIGR01920  48 ldpelierilealieklgikegleveveseiPagsGLksSsAlvnAl 94 
                    ++l+ r+l+ ++ek g+k   + +   ++Pa++GL + sA ++  
  MMETSP1061-20121228|14651_1 191 DSTNLVLRALDLMREKTGVKMYFKTNLVKQVPAQAGLGGGSANAATA 237
                  5689999*************99999999************9987654 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.062
    TIGR01920 229 GAavaglsGkGPsyvalteepe.eevaea 256
                  G   + +sG G s + ++e ++ e+   +
  MMETSP1061-20121228|14651_1 373 GFQHVMMSGSGTSIFCIGEPEDrEAFLDE 401
                  5566789***********99874433333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.24
# Mc/sec: 2348.31
//
Query:       MMETSP1061-20121228|14667_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-10   37.4  13.6    3.8e-06   24.3   5.0    2.4  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   5.0   9.2e-10   3.8e-06      10     173 ..     228     394 ..     220     404 .. 0.87
   2 !   16.8   0.3   1.8e-07   0.00075     217     263 ..     467     513 ..     438     514 .. 0.93

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 9.2e-10
    TIGR00950  10 ellesqlplyfavlrrlifallllLpllrlrnslkrllrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrk....kkllAavlalaGivlllsdg..nlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvlliGall 173
                   l++ +lp+++a+ +r+++a+++l p+l+    +  l +++ l   + ++ y +  +a   +++a++  l++l+ +   +l  l+ k+++ +    ++++Aa++ l+G+ +l   g   l    +G ++++l ++ f   + ++ r+++ke+++ l++t+ ++ +++a++
  MMETSP1061-20121228|14667_1 228 RLMNDALPASAATSTRMMLASVALSPFLFQ--LKPSLRQTAALCGTFTALGYISQSIALVDTPAATVSFLGALVVIVCPALAVLVDKKKMGFadapQTWIAAITCLVGVGVLELGGdaGLGQVGWGDVWSVLQAVGFGTSFFITERMMAKEPSQALPITA-MQCAMSAAF 394
                  5678899********************999..46677778888888899999**********************999999******999975333379*************999998889999********************************99996.577776655 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.8e-07
    TIGR00950 217 lkevdasaasilalleplvallLgllilgetlslvqliggalilaav 263
                  l +++ s as+l   epl a++ + ++++e+lsl++ +ggali+aa 
  MMETSP1061-20121228|14667_1 467 LGKLSSSEASVLLATEPLWAAVFASFLINEQLSLWDGVGGALIVAAC 513
                  6678999*************************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 2761.62
//
Query:       MMETSP1061-20121228|14673_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-19   65.9   0.0    4.7e-19   65.6   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    8.9e-10   36.2   0.1    1.6e-09   35.4   0.1    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   2.3e-22   4.7e-19       1     240 [.     118     353 ..     118     364 .. 0.87

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 2.3e-22
    TIGR03903   1 etghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkr...vvqGasvaevlykqLsPvdvslPsai...aghpLgevLRkalnkdvrqRaasaeal 240
                  etg   a+k l +   e e  ++  r e+ +  +  hP+i++L +  e+++  ++ + ++ +G  + ++L  +   + a+ ++++ q+L ++   h++ +vhRDLk +n +   ++ + + +++DFG++       d d       ++ +G+P   aPe +Rge    k D++a G+i    L G++    ++G+++  v ++ L  + v  Ps i    +    + +R  l kd++qR  +aea 
  MMETSP1061-20121228|14673_1 118 ETGVDFAVKCLNIGLIESEAVIQALREEVFIMCQADHPDIIRLEEVYESDE-QIYLIMDLLKGGDMFDRLEDQPNYSEADCSHMVKQMLSSVKYLHANNIVHRDLKLENFLFDDKE-SINVQLIDFGLSKHF----DPDGC---NLNDAVGTPYTVAPEIIRGEY-NEKVDVWAIGVITYLLLCGDPpfgGLDGEAMTTVRQNILNCNLVFEPSEIwdsVSDSAKDFVRCLLTKDPQQRPSAAEAA 353
                  5888999*******99***************99*********977777655.9********************************************************9987654.56899*****98643....22333...35689***************7.579****************983335799*******************9994333567889*************9999876 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.1   7.7e-13   1.6e-09      45     138 ..     143     246 ..     133     258 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 7.7e-13
    TIGR03724  45 rkEarllseakkagv.ntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivkdd...klyliDfGLgkk 138
                  r+E+ ++ +a + ++ +   vy+ d++   ++m+ ++g ++ d le++ +       +++k++   v  lH ++ivh Dl  +N++++d+   ++ liDfGL+k+
  MMETSP1061-20121228|14673_1 143 REEVFIMCQADHPDIiRLEEVYESDEQ-IYLIMDLLKGGDMFDRLEDQPNyseadcsHMVKQMLSSVKYLHANNIVHRDLKLENFLFDDKesiNVQLIDFGLSKH 246
                  566777777766654155678888877.8999*************998778999999999***************************755222678*******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 2089.20
//
Query:       MMETSP1061-20121228|14696_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2680.39
//
Query:       MMETSP1061-20121228|14697_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-127  423.4  18.4   3.4e-127  423.1  12.8    1.1  1  TIGR00769 AAA: ADP/ATP carrier protein family


Domain annotation for each model (and alignments):
>> TIGR00769  AAA: ADP/ATP carrier protein family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  423.1  12.8  8.3e-131  3.4e-127       4     471 ..      89     550 ..      86     551 .. 0.91

  Alignments for each domain:
  == domain 1    score: 423.1 bits;  conditional E-value: 8.3e-131
    TIGR00769   4 selkkilPlfllffcilfnytilrdtkdtlvvtakgsgaevipflkvwvvvPsavivmliyaklsnvlskealfyaviapflvffalfavvlyPlsdllhpealadkll.ell...pprlkgfiailrkWsfalfyvlaelWgsvvlsllfWgfanqitkideakrfyalfglganvalivsgrvvkyfsklraslsegvdawavslkalmvivvvsgliiillyrwin......rnvllderlkkaa.lkekkakpklsakeslkflvsskyildlallviaygisinlvevvWksklkeqypskneysafmgefstltGvvsvllmlllgnvlrkygWlvaalvtPlvllltGvaffslilfakkaaslvavlgmtPlllavvvgaiqnvlsksvkyslfdatkemayiPldeeqkvkgkaaidvvaarlGksGGaliqqgllvifgslaastpylavilliivvvWlaaakkleke 471
                  +e++k+l ++ + f+i +  t+ rdtkdtlvvt+ g+  e+i+flk++ v+P+a  ++ +y+k+s++lsk++lfy+ + pf  ff  f  v+yP +  lhp   + ++   +    + +l+ +  i+ +W+ alfyv+ae+++sv + llfW+fan++  +d+akrfy+lf     +a +++g+ v+++++  a+        + sl+ l++ +  +g++i+++y+           v   + + + a    kk+kpk+s+ es+kfl+ss+y++ +a lv+ yg+sin+ ev+Wks +k+qyp++ ey+ fmg+fs ++G  + +++l+  +v+r  gW v+a+ tP ++ +  + ff+ il++          + + l +av++g+iq +lsk+ ky+lfd+t +m+yiPld+++kvkgkaaidv+++r+GksGG++iqq l++ fg + ++ p++avi++ i+ +Wl aa+kl   
  MMETSP1061-20121228|14697_1  89 EEVEKFLLIGAIKFFIIMALTLTRDTKDTLVVTQCGA--EAIAFLKIYGVLPAATAFIALYSKMSDLLSKKTLFYTTCIPFFLFFVFFDAVIYPNAARLHPSLASVESVlGITngsGGGLTVLANIIAHWTSALFYVVAEIYSSVSVGLLFWQFANDVVSVDQAKRFYPLFAQMSGLAPVLAGQYVVHYASRAATF-------STSLHRLTAAISFAGCMICFFYHASTsfiekkEGVKFGSSSGDDApATTKKKKPKMSMVESIKFLASSQYLRLIASLVLGYGLSINFTEVMWKSLVKKQYPNPLEYQRFMGNFSSAVGASTCIVILFGVHVIRILGWKVGAMATPAIMSVLAAPFFACILLGLD--------SPARLHIAVILGTIQSLLSKTSKYALFDPTTQMSYIPLDQDSKVKGKAAIDVLGSRIGKSGGSFIQQILVLSFGNIINAAPIVAVIFYSILFAWLSAASKLSTL 550
                  6899*****************************9876..**************************************************************9877665413331114578888999*********************************************************9887776665544.......4589999999999999999999988745554334554444545555778888***********************************************************************************************************98654........456799*********************************************************************************************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.25
# Mc/sec: 2951.28
//
Query:       MMETSP1061-20121228|14757_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1539.87
//
Query:       MMETSP1061-20121228|14763_1  [L=778]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (778 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 3020.22
//
Query:       MMETSP1061-20121228|14776_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1264.32
//
Query:       MMETSP1061-20121228|14786_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.21    7.7   7.2       0.25    7.4   1.4    2.1  2  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   1.4   6.1e-05      0.25     193     295 ..     100     206 ..      92     213 .. 0.78
   2 ?    3.1   0.2    0.0013       5.2     279     338 ..     257     315 ..     233     345 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 6.1e-05
    TIGR04154 193 yavlaGialalylltwppavl..fvlivgvfvlvqlvldllrgkspeylaivgavallvaavlvlpfieks....lelsltsysllqvlallgvalglvllallarlve 295
                  ++vl  i+ +l +   +p++l  f ++++v+v++   l   ++ s+++++ + +++l+   v+v++f++++    ++++++++s+ ++ ++l  + +++ l+ll+++++
  MMETSP1061-20121228|14786_1 100 MSVLNPICCVLAMNYASPSILapFSGLTLVWVILGSPLINSEQPSSQQVLACCLIILG--EVIVAIFGDHTndegVTVKAVQISYTKPAFVLYFVGLVLYLILLSYWIN 206
                  5777788899999999999886678899999998877777777777777666666655..5555555655556889***************************999776 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0013
    TIGR04154 279 gvalglvllallarlverkdldrayypaavlglallgllvlalvlpslfsllisnllrff 338
                  ++a+g+++  ll   +  k++d  y  a+++g +++++ ++a v  + f+  +  +++++
  MMETSP1061-20121228|14786_1 257 ALAAGTAFAGLLMLTACMKRYDATYSSASFVGSFVVSASIMAAVHYNTFQ-QLDGIVNYV 315
                  34444444444444445666777777777777777777777777777777.666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1734.06
//
Query:       MMETSP1061-20121228|14792_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-07   28.1   2.1       0.26    8.6   0.1    4.6  5  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      0.004   15.1   0.3      0.079   11.0   0.0    3.3  4  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.032        65     135     164 ..     148     177 ..     117     181 .. 0.57
   2 !    8.6   0.0   0.00013      0.26      96     128 ..     187     219 ..     180     228 .. 0.88
   3 !    3.8   0.4    0.0037       7.6      22      62 ..     232     272 ..     221     283 .. 0.62
   4 !    3.6   0.0    0.0043       8.8     128     166 ..     291     329 ..     281     339 .. 0.84
   5 !    8.6   0.1   0.00013      0.26     111     167 ..     310     372 ..     299     380 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.032
    TIGR02521 135 arsyeNaglcalkagdtekaekyltralki 164
                   +++ N+++  l+ g  + a+ ++++a++i
  MMETSP1061-20121228|14792_1 148 GSALHNVAVANLRSGLLDDARDAIEEAVRI 177
                  346666666666666666666666666665 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00013
    TIGR02521  96 pnngdvlNNYGtFLcqqkkyeeAeqqfeaAied 128
                  p+ +d l  YG  L ++kky++ +q fe A+e 
  MMETSP1061-20121228|14792_1 187 PKVADSLVEYGIILLSMKKYKKSIQVFEDALEL 219
                  667788889*********************986 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.0037
    TIGR02521  22 skkkdrekaakirvqLaleYleqgdlekAkenlekAleldp 62 
                  +k +++ k aki+ + +   +e +++++A+++  +A++ ++
  MMETSP1061-20121228|14792_1 232 TKREAKLKKAKIQHNIGCVNFEIKNYDEARRKYMQAIQEQK 272
                  44445555566666666666666666666666666666554 PP

  == domain 4    score: 3.6 bits;  conditional E-value: 0.0043
    TIGR02521 128 dpkYeqparsyeNaglcalkagdtekaekyltralkidp 166
                  +p   + a++  N+g++ l++++ + a  ++ ++lki++
  MMETSP1061-20121228|14792_1 291 KPGHLTMASTMCNKGYIDLEQEKYKDAIDTFMESLKIQK 329
                  56667788999999****************999999987 PP

  == domain 5    score: 8.6 bits;  conditional E-value: 0.00013
    TIGR02521 111 qqkkyeeAeqqfeaAiedpkYeqpar......syeNaglcalkagdtekaekyltralkidpk 167
                  +q ky++A+  f++ ++ +k+  +a+      + +N+++c+ k+++ eka+   + ++k++ +
  MMETSP1061-20121228|14792_1 310 EQEKYKDAIDTFMESLKIQKVLLEADnklilsTMTNIAYCYCKLQEPEKARVVYKDLVKLQSE 372
                  678999999999999998887655432222228999999999999999999999998887765 PP

>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.66   1.4e+03      14      27 ..     120     133 ..     120     135 .. 0.82
   2 ?   -2.2   0.0      0.64   1.3e+03      12      25 ..     160     173 ..     159     176 .. 0.81
   3 ?   -1.6   0.0       0.4   8.2e+02      13      27 ..     203     217 ..     200     220 .. 0.75
   4 !   11.0   0.0   3.8e-05     0.079       6      28 ..     346     368 ..     341     370 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.66
    TIGR00756  14 grveeAlelfdeMk 27 
                  g++  A+++f++++
  MMETSP1061-20121228|14792_1 120 GKYARAIKIFESIL 133
                  77889*****9876 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.64
    TIGR00756  12 kagrveeAlelfde 25 
                  ++g +++A++  +e
  MMETSP1061-20121228|14792_1 160 RSGLLDDARDAIEE 173
                  78999***998877 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.4
    TIGR00756  13 agrveeAlelfdeMk 27 
                   +++++ +++f++ +
  MMETSP1061-20121228|14792_1 203 MKKYKKSIQVFEDAL 217
                  678899999998755 PP

  == domain 4    score: 11.0 bits;  conditional E-value: 3.8e-05
    TIGR00756   6 lisglckagrveeAlelfdeMke 28 
                  +  ++ck  ++e+A+ +++++++
  MMETSP1061-20121228|14792_1 346 IAYCYCKLQEPEKARVVYKDLVK 368
                  568***************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 2414.91
//
Query:       MMETSP1061-20121228|14835_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 423.75
//
Query:       MMETSP1061-20121228|14834_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|14831_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-23   79.0   0.0    1.2e-22   78.3   0.0    1.2  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family


Domain annotation for each model (and alignments):
>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.3   0.0     3e-26   1.2e-22      11     191 ..     131     326 ..     126     328 .. 0.77

  Alignments for each domain:
  == domain 1    score: 78.3 bits;  conditional E-value: 3e-26
    TIGR00095  11 klkiiggkykgrklkvvnsestRPttdrVreslFnilrk...eivgakvLdlfaGsgalglEALsRgakkvvfveqdkkvaktlkeNlstlk.....lskeqatvlndaeralav......lakketvfdiiylDPPfevklleailelllenkilnekalivveeeee..eelptspetlel....lkqkkyGktklely 191
                  +lki gg  +gr+l  + s  +RP +++Vre+++++l     +    + Ldlf+Gsg++glE +sRgak+++f +  +  ++ + +N+   +           ++++ ++++l         +++e +f+i+ + PP+e+  + ++l++  +  +++e++++  e++ e   +lp++ ++ ++    ++++kyG+t +++y
  MMETSP1061-20121228|14831_1 131 NLKIFGGTARGRRLDSP-SVYLRPMMGKVREAVYSTLISfgvYDYPVRHLDLFSGSGSVGLESMSRGAKHCTFCDLAEDCCAAISRNIPWCQfdgpeY---STRIVHADVLKLLRepvavgIPEGE-TFNIVTICPPYEEVTYADLLDATANSPLVEEDTIVLLEYPVElwGDLPHVYSGDSVtmigIRNRKYGRTVIAMY 326
                  68999*********987.568**************76542113345899**************************************98877544331...3344444444332211111134445.5****************************************996688887765443223379999999987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1816.17
//
Query:       MMETSP1061-20121228|14836_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1859.85
//
Query:       MMETSP1061-20121228|14851_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   14.0   0.1     0.0052   13.5   0.1    1.2  1  TIGR01179 galE: UDP-glucose 4-epimerase
  ------ inclusion threshold ------
      0.021   11.6   0.6       0.11    9.2   0.4    1.9  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
      0.022   11.6   0.3      0.074    9.9   0.2    1.7  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family


Domain annotation for each model (and alignments):
>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   3.8e-06    0.0052       2      99 ..      52     154 ..      51     181 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.8e-06
    TIGR01179   2 iLvtGgaGyiGshvvrqllekgkevvvl.Dnlsk.......gskealkalekitevklvegdladkekleavleeekidaviHfaali.avgEsvkePlkYYennvv 99 
                  i v G++G  Gs  v q l++g +v+ l  n s+       g  +a k le  ++++++ gd++ k+ +++v+e++    ++ +++++ +vgE + +     +nnv 
  MMETSP1061-20121228|14851_1  52 IAVFGASGLTGSEAVFQALNEGDKVIGLtRNPSNlkvpagsGGDDAGKSLE-NENLTMIAGDVTKKSDVDKVFESDVDGVIVALGGKTaEVGETMLTDG---TNNVI 154
                  6799*********99999999999886624555511111113333444444.349******************99888888899997527999996543...34444 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.4   7.9e-05      0.11       4     113 ..      53     170 ..      50     220 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 7.9e-05
    TIGR03466   4 lvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdea..slkkal...kGcealfHvAAdyrlwa...kdpeelykanvegtravleaAleagvervvytss 113
                   v Ga+G  Gs+ v + l+eG +v  l+r+ s+ +  ++   + +  +l++e+  +++  +   + ++++f    d  + a   k+ e   ++  +gt++v++a +e+gv+r+    s
  MMETSP1061-20121228|14851_1  53 AVFGASGLTGSEAVFQALNEGDKVIGLTRNPSNLKVPAGSGGDDAGKSLENENltMIAGDVtkkSDVDKVFESDVDGVIVAlggKTAEVGETMLTDGTNNVIAAMKEKGVKRLAVVTS 170
                  588***************************9997654444444333333333210111111111234444444444333331102223333344567777777777777777644444 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.2   5.4e-05     0.074       2     119 ..      53     169 ..      52     175 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 5.4e-05
    TIGR04180   2 lvtGadGfiGshlvealvekGaevralvlynsfnsw....GwldevekevkkeievvlGdirdaesvkkavk.gvdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekv.vht 119
                   v Ga G+ Gs  v + +++G +v  l++  s+ +     G  d+ ++  ++++ +++Gd+ +++ v k+ + +vd v+   al +     +++e        Gt nv+ a ++++v+++ v t
  MMETSP1061-20121228|14851_1  53 AVFGASGLTGSEAVFQALNEGDKVIGLTRNPSNLKVpagsGGDDAGKSLENENLTMIAGDVTKKSDVDKVFEsDVDGVI--VALGG-----KTAEVGETMLTDGTNNVIAAMKEKGVKRLaVVT 169
                  588************************99877644322226777778788899*********99999988752566553..34433.....222222222346899999999999998873444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1275.89
//
Query:       MMETSP1061-20121228|14854_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   12.6   2.3       0.21    9.9   0.0    3.2  5  TIGR02220 phg_TIGR02220: phage conserved hypothetical protein, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR02220  phg_TIGR02220: phage conserved hypothetical protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.68   2.8e+03       9      31 ..      21      43 ..      20      46 .. 0.70
   2 ?    0.3   0.0     0.051   2.1e+02      32      49 ..     116     133 ..     103     139 .. 0.85
   3 ?    9.9   0.0   5.1e-05      0.21      24      54 ..     134     164 ..     125     172 .. 0.81
   4 ?   -1.7   0.0       0.2   8.2e+02      32      49 ..     193     210 ..     191     223 .. 0.72
   5 ?   -1.0   0.0      0.13   5.1e+02      32      53 ..     219     240 ..     202     251 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.68
    TIGR02220  9 NekagksfkltaekhkklikaRl 31
                 N+ +  sf + + k +++ + R+
  MMETSP1061-20121228|14854_1 21 NSDTTVSFSVVSTKSRTFSNHRF 43
                 66777788888888777776665 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.051
    TIGR02220  32 kegykledFkkViDnkvs 49 
                  ke+yk+ d  k iD  v+
  MMETSP1061-20121228|14854_1 116 KEEYKVGDITKEIDSRVK 133
                  799***********9887 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 5.1e-05
    TIGR02220  24 kklikaRlkegykledFkkViDnkvseWlgt 54 
                   ++ + R +e+y+l d   V+Dn++++ ++ 
  MMETSP1061-20121228|14854_1 134 SEIASMRGNEEYQLGDLIVVVDNMAKDMTEE 164
                  56667899*****************987655 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.2
    TIGR02220  32 kegykledFkkViDnkvs 49 
                  k++y+  d  + iD+ v+
  MMETSP1061-20121228|14854_1 193 KDEYEFGDLSQAIDQRVK 210
                  577888889999998765 PP

  == domain 5    score: -1.0 bits;  conditional E-value: 0.13
    TIGR02220  32 kegykledFkkViDnkvseWlg 53 
                  k++y+  d  + i+n   eW++
  MMETSP1061-20121228|14854_1 219 KDEYEFGDISREIENRRREWVK 240
                  5678888888889999999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1324.44
//
Query:       MMETSP1061-20121228|14891_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.45
# Mc/sec: 170.12
//
Query:       MMETSP1061-20121228|14927_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.23
# Mc/sec: 338.58
//
Query:       MMETSP1061-20121228|14922_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       240  (0.058508); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1371.74
//
Query:       MMETSP1061-20121228|14934_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1704.38
//
Query:       MMETSP1061-20121228|14949_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.11s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2667.09
//
Query:       MMETSP1061-20121228|14959_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.37
# Mc/sec: 934.63
//
Query:       MMETSP1061-20121228|14962_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1328.41
//
Query:       MMETSP1061-20121228|14998_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|14995_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-17   59.7   0.0      1e-16   59.4   0.0    1.1  1  TIGR01682 moaD: molybdopterin converting factor, subunit 1
    8.2e-10   36.9   0.0    1.1e-09   36.5   0.0    1.1  1  TIGR01687 moaD_arch: MoaD family protein


Domain annotation for each model (and alignments):
>> TIGR01682  moaD: molybdopterin converting factor, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.4   0.0     5e-20     1e-16       1      80 []      38     123 .]      38     123 .] 0.93

  Alignments for each domain:
  == domain 1    score: 59.4 bits;  conditional E-value: 5e-20
    TIGR01682   1 ikvlyFAkvrekagt.deetlelpdevttveelkellakegp...ellesrkqvrvAvneeyve..deallkegdevAfiPPvsGG 80 
                  ++vl+FA+ re ag  ++e lel  + ++++ l++ la+ +p    ++++ +++ +A neeyv+  +  +l++gd++A+iPP+sGG
  MMETSP1061-20121228|14995_1  38 VEVLFFASAREAAGNlSKELLELTRDEANTQFLRQKLASLYPglaPMVQDEDNLTLARNEEYVTkgQVLTLENGDTIALIPPISGG 123
                  79***********962666789***99***************99999999**************88888999*************9 PP

>> TIGR01687  moaD_arch: MoaD family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   5.3e-13   1.1e-09       1      88 []      38     123 .]      38     123 .] 0.86

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 5.3e-13
    TIGR01687   1 vrvkyfatlrditgkkeee.iele..gktvedlleelkarypkekkelfkegaelvkeviilvNgrnvdsgleteLkdgDevailPpvsGG 88 
                  v+v +fa  r+++g+ + e +el    ++ + l ++l + yp     +  e     +++++++N  +v +g    L++gD +a++Pp+sGG
  MMETSP1061-20121228|14995_1  38 VEVLFFASAREAAGNLSKElLELTrdEANTQFLRQKLASLYPGLAPMVQDE-----DNLTLARNEEYVTKGQVLTLENGDTIALIPPISGG 123
                  7899*********986655246554477889999********888866555.....79********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 676.44
//
Query:       MMETSP1061-20121228|15006_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.2e-104  344.8   0.0   9.6e-104  344.5   0.0    1.0  1  TIGR01452 PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
    5.1e-59  197.8   0.0    6.1e-59  197.6   0.0    1.1  1  TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA
      2e-41  140.0   0.0    9.1e-27   92.0   0.0    2.1  2  TIGR01457 HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
    2.8e-16   57.5   0.1      1e-08   32.7   0.0    2.1  2  TIGR01459 HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
    6.8e-13   46.4   0.0    8.3e-06   23.1   0.0    2.1  2  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
    9.2e-12   42.6   0.0    1.6e-07   28.9   0.0    2.2  2  TIGR01668 YqeG_hyp_ppase: HAD phosphatase, family IIIA
    2.4e-11   41.7   0.1    2.5e-06   25.5   0.0    2.6  3  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    1.9e-07   28.9   0.0    2.8e-05   21.8   0.0    2.1  2  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    2.2e-05   22.2   0.0    0.00019   19.2   0.0    2.2  2  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain
    3.7e-05   20.6   0.0     0.0032   14.2   0.0    2.5  2  TIGR01456 CECR5: HAD hydrolase, TIGR01456 family
    7.5e-05   21.0   0.2      0.051   11.8   0.0    2.8  2  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
     0.0012   16.3   0.0       0.34    8.3   0.0    2.3  2  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
     0.0019   15.8   0.0      0.056   10.9   0.0    2.2  2  TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase
     0.0029   14.9   0.0       0.02   12.2   0.0    2.0  2  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
     0.0058   13.6   0.0      0.014   12.3   0.0    1.6  2  TIGR02244 HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
  ------ inclusion threshold ------
      0.017   12.4   0.0       0.94    6.8   0.0    2.3  2  TIGR01261 hisB_Nterm: histidinol-phosphatase
      0.052   11.6   0.2        3.1    5.8   0.2    2.8  2  TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3


Domain annotation for each model (and alignments):
>> TIGR01452  PGP_euk: phosphoglycolate/pyridoxal phosphate phosphatase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.5   0.0    4e-106  9.6e-104       2     278 ..      65     341 ..      64     342 .. 0.98

  Alignments for each domain:
  == domain 1    score: 344.5 bits;  conditional E-value: 4e-106
    TIGR01452   2 vetfifdcdGvlWlGekvvpGaPelldrlakagkkvlfvtnnstksraeyakklaklGlnsv.aeelvssalvaaaller...aidankkvyviGeeGlreeldekGiryvGdpsekdkkaarksgefmkleedvgavvvGydkhfdyvklrkasaylrepgvllvatnrdevtplsdeseipgaGslvaaiktasgreplvvGkPsdfmleyikeklsidPartlmvGdrletdilfGkdgGlktvlvlsGvsrleeiqevlaaedddlvPdyvveslad 278
                  v+ fifdcdGv+W G++ ++G Pe+l +l+kagkk++fvtnnstksra+y kk+  lGl  v aee++ss+++aaa+le+   ++d +kkvy+iGe G+ eeld+ Gi ++G+p+++dk+   + g  ++ + dvgav+vG+d+ ++y+k+++a +++ e+g  ++atn d+vt+l+d++e++g+Gs+v+aik+++g+ep  vGkPs+ m++yi+ k+++d +r+ mvGdrl+td+lfG d Gl+ +lvlsGv+     +e+l  +d+ + Pdy+++ + +
  MMETSP1061-20121228|15006_1  65 VDVFIFDCDGVIWRGDSLIDGIPETLAKLRKAGKKMFFVTNNSTKSRAGYKKKFDGLGLTEVpAEEIFSSSFAAAAYLEQskfPTDGSKKVYIIGEVGIGEELDLIGIPHIGGPADSDKAPDMGPGGRLEVDPDVGAVIVGFDRNVNYYKIQYAQLCINEEGAEFIATNLDAVTHLTDAQEWAGNGSMVGAIKGCTGQEPTLVGKPSPLMIDYIESKYGVDRKRICMVGDRLDTDVLFGTDNGLQSLLVLSGVT----SEEKLLGPDNTITPDYYADDINA 341
                  899********************************************************98769****************9999999***********************************************************************************************************************************************************************....8999**************98865 PP

>> TIGR01460  HAD-SF-IIA: HAD hydrolase, family IIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.6   0.0   2.5e-61   6.1e-59       1     246 []      68     316 ..      68     316 .. 0.97

  Alignments for each domain:
  == domain 1    score: 197.6 bits;  conditional E-value: 2.5e-61
    TIGR01460   1 flfDidGVlvrgkkpipgalealnrlrakgkpvvfvTNnsgrseedlaeklssllgvdvspeqiitshsvtkellk.....kfenervlligegelreslenlgfknvvtvddlrkivedidvedleaekiqaavlvgepsdlsydelakaakllsegkvpfiaaneeklerlgdgafrlglgsilekikeksgreeivvGKPspalykaaeellkarakrrkvlmvGDnlrtDvlgAkeaGldslLvltG 246
                  f+fD+dGV++rg++ i g +e+l++lr++gk+++fvTNns++s++++ +k+  l+  +v +e+i +s+ +++++l+     +   ++v++ige  + e+l+  g+ + +   d +k+ +     +le +  ++av+vg++++++y+++++a  +++e+  +fia+n +++++l+d++ ++g+gs++ +ik+ +g+e+++vGKPsp++++++e++ + ++kr+   mvGD+l+tDvl++ ++Gl+slLvl+G
  MMETSP1061-20121228|15006_1  68 FIFDCDGVIWRGDSLIDGIPETLAKLRKAGKKMFFVTNNSTKSRAGYKKKFDGLGLTEVPAEEIFSSSFAAAAYLEqskfpTDGSKKVYIIGEVGIGEELDLIGIPHIGGPADSDKAPDMGPGGRLEVDPDVGAVIVGFDRNVNYYKIQYAQLCINEEGAEFIATNLDAVTHLTDAQEWAGNGSMVGAIKGCTGQEPTLVGKPSPLMIDYIESKYGVDRKRI--CMVGDRLDTDVLFGTDNGLQSLLVLSG 316
                  9****************************************************999*********************978777889******************************99966679999*********************************************************************************************96..6*************************9 PP

>> TIGR01457  HAD-SF-IIA-hyp2: HAD hydrolase, TIGR01457 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   3.6e-15   8.7e-13       4     102 ..      68     171 ..      65     181 .. 0.89
   2 !   92.0   0.0   3.8e-29   9.1e-27     110     243 ..     199     336 ..     187     342 .. 0.89

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 3.6e-15
    TIGR01457   4 ylidldGtlykGkekieeavefvkelkkrdvpylfvtnnstrtpesvaellasldi.patkeqvftaslatadyladlk....keksvyviGeeGlkeaikeaG 102
                  ++ d dG +++G   i+   e + +l+k +   +fvtnnst++    ++++  l + + + e++f++s+a a yl++ k     +k+vy+iGe G+ e ++  G
  MMETSP1061-20121228|15006_1  68 FIFDCDGVIWRGDSLIDGIPETLAKLRKAGKKMFFVTNNSTKSRAGYKKKFDGLGLtEVPAEEIFSSSFAAAAYLEQSKfptdGSKKVYIIGEVGIGEELDLIG 171
                  899************************************************9988636789***************98733224799*********99987666 PP

  == domain 2    score: 92.0 bits;  conditional E-value: 3.8e-29
    TIGR01457 110 pdyvvvGldraisyeklakaalair.kGakfistngdlai.pterGllpGnGsliavlevatgvkpvviGkpeaiilekalkrlGtekeetllvGdnyatdilaGidaGidtllvhtGvtkkeelk..dkeakptyvv 243
                     v+vG+dr+++y k+  a l i+ +Ga+fi+tn d+    t+     GnGs++  ++ +tg +p ++Gkp++++++    + G++++ + +vGd  +td+l G d+G+++llv +Gvt +e+l   d+++ p y  
  MMETSP1061-20121228|15006_1 199 VGAVIVGFDRNVNYYKIQYAQLCINeEGAEFIATNLDAVThLTDAQEWAGNGSMVGAIKGCTGQEPTLVGKPSPLMIDYIESKYGVDRKRICMVGDRLDTDVLFGTDNGLQSLLVLSGVTSEEKLLgpDNTITPDYYA 336
                  5569*******************9637*********97551699999*****************************************************************************96224566776655 PP

>> TIGR01459  HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   4.2e-11     1e-08       4      87 ..      61     145 ..      59     165 .. 0.85
   2 !   22.9   0.0   4.3e-08     1e-05     154     241 ..     226     314 ..     192     315 .. 0.81

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 4.2e-11
    TIGR01459   4 liedYdvFLlDlwGvvidGqeayPGavealaklkaegktvylvsn.ssksvaeleatlkklGiaadlfegivssGevavrsidel 87 
                  l ++ dvF++D  Gv+  G+    G+ e+lakl+++gk +++v+n s+ks a  ++++  lG+     e i ss   a   ++++
  MMETSP1061-20121228|15006_1  61 LLDNVDVFIFDCDGVIWRGDSLIDGIPETLAKLRKAGKKMFFVTNnSTKSRAGYKKKFDGLGLTEVPAEEIFSSSFAAAAYLEQS 145
                  78899**************************************97266778889**********888889999985555555544 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 4.3e-08
    TIGR01459 154 kvpflCanPDrvv.vsagrtrygaGelaelfeelGGk.viyvGkPypaifdkalkeleerekrrvllvGDslvtDiaganavgidtalvl 241
                     f+ +n D v  ++ ++   g G +   ++   G+    vGkP p + d +  + +  +++r+ +vGD l tD++ +   g++++lvl
  MMETSP1061-20121228|15006_1 226 GAEFIATNLDAVThLTDAQEWAGNGSMVGAIKGCTGQePTLVGKPSPLMIDYIESKYG-VDRKRICMVGDRLDTDVLFGTDNGLQSLLVL 314
                  55688899998872466666778999999999987762588************99987.68999************************98 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.3e-07   3.1e-05       3      85 ..      67     146 ..      65     149 .. 0.90
   2 !   23.1   0.0   3.5e-08   8.3e-06     158     248 ..     248     336 ..     200     344 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.3e-07
    TIGR01458   3 gvlldisGvlydsdaksgvavpgsaeavkrlkraslkvrfvtnekkeskrelverlqrlgf.diseeevitpapaaaqllkekk 85 
                   ++ d  Gv++  d      + g  e++++l++a  k+ fvtn++ +s++   +++  lg+ ++  ee++++  aaa +l++ k
  MMETSP1061-20121228|15006_1  67 VFIFDCDGVIWRGDS----LIDGIPETLAKLRKAGKKMFFVTNNSTKSRAGYKKKFDGLGLtEVPAEEIFSSSFAAAAYLEQSK 146
                  577888888887777....899999***********************************8579****************9876 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 3.5e-08
    TIGR01458 158 dvGpfvkaleyatdikaevvGkPskeffkealralGvepeeavmiGddlvddvGGaqavGmrgvqvrtGkyrpsdeekievkpdltvdsla 248
                  + G+ v a++ +t+ + + vGkPs+          Gv+ +++ m+Gd l  dv    + G+++++v +G   +s+e+ + +    t d +a
  MMETSP1061-20121228|15006_1 248 GNGSMVGAIKGCTGQEPTLVGKPSPLMIDYIESKYGVDRKRICMVGDRLDTDVLFGTDNGLQSLLVLSGV--TSEEKLLGPDNTITPDYYA 336
                  67999************************9999*********************************9996..3445555554444444444 PP

>> TIGR01668  YqeG_hyp_ppase: HAD phosphatase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   0.00012      0.03      28      79 ..      68     117 ..      47     159 .. 0.80
   2 !   28.9   0.0   6.6e-10   1.6e-07      91     144 ..     269     322 ..     247     326 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00012
    TIGR01668  28 vvlDkDntlvepdsnevapalkewieelkaaGlkllivSNnageqrvkalek 79 
                   ++D D  +  +   ++++ + e +++l++aG+k++ v Nn  ++r+++ +k
  MMETSP1061-20121228|15006_1  68 FIFDCDGVI--WRGDSLIDGIPETLAKLRKAGKKMFFVTNNSTKSRAGYKKK 117
                  678888766..45557899999************************998766 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 6.6e-10
    TIGR01668  91 KkpgkafrralkemgltseqvvvvGDrlfTDvllgnrnGsltilveplvhpdea 144
                  K+++  +  ++ + g+  + + +vGDrl TDvl g  nG+ ++lv ++v ++e 
  MMETSP1061-20121228|15006_1 269 KPSPLMIDYIESKYGVDRKRICMVGDRLDTDVLFGTDNGLQSLLVLSGVTSEEK 322
                  888889999999************************************999985 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.6e-05     0.011       3      51 ..      68     107 ..      66     120 .. 0.83
   2 !   25.5   0.0   1.1e-08   2.5e-06      89     138 ..     265     313 ..     229     316 .. 0.86
   3 ?   -3.4   0.0       8.2     2e+03       8      23 ..     327     341 ..     326     347 .. 0.63

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.6e-05
    TIGR01662   3 vvlDlDgtLiddvdyvteedeaelypevidalaelkkeGykvvivtNqs 51 
                  +++D Dg++          +  +l++++++ la+l+k+G+k + vtN+s
  MMETSP1061-20121228|15006_1  68 FIFDCDGVIW---------RGDSLIDGIPETLAKLRKAGKKMFFVTNNS 107
                  799*****99.........333457***********************9 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 1.1e-08
    TIGR01662  89 ceyrKpktgmleealkrlneidakesvvvGDavltDleaakrvGlatvlv 138
                    + Kp++ m++++ +++  +d k++++vGD++ tD+ ++  +Gl+  lv
  MMETSP1061-20121228|15006_1 265 TLVGKPSPLMIDYIESKY-GVDRKRICMVGDRLDTDVLFGTDNGLQSLLV 313
                  4567**************.8************************997666 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 8.2
    TIGR01662   8 DgtLiddvdyvteede 23 
                  D+t++  ++y ++++ 
  MMETSP1061-20121228|15006_1 327 DNTIT-PDYYADDINA 341
                  99**9.4455555544 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.019       4.5      99     122 ..      86     109 ..      80     125 .. 0.84
   2 !   21.8   0.0   1.2e-07   2.8e-05     148     217 ..     267     339 ..     260     342 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.019
    TIGR02253  99 vvkvLleLresGyrlgliTdglte 122
                  + ++L +Lr++G ++  +T+  t+
  MMETSP1061-20121228|15006_1  86 IPETLAKLRKAGKKMFFVTNNSTK 109
                  5689****************7765 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 1.2e-07
    TIGR02253 148 veKPhpkiFkaalkrlgvkpeeavmvGDrlekDikGaknlglktvwinrgkskkee...ddvvekpdfeissl 217
                  v KP p +  +   + gv+ +   mvGDrl++D+  +   gl+++++  g  ++e+    d++ +pd+  +++
  MMETSP1061-20121228|15006_1 267 VGKPSPLMIDYIESKYGVDRKRICMVGDRLDTDVLFGTDNGLQSLLVLSGVTSEEKllgPDNTITPDYYADDI 339
                  78******************************************88888877776667867777799977665 PP

>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.61   1.5e+02      34      53 ..      87     106 ..      66     135 .. 0.63
   2 !   19.2   0.0   7.9e-07   0.00019      97     142 ..     264     310 ..     223     316 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.61
    TIGR01656  34 vdallklkaaaytlvvvtnQ 53 
                   + l+kl++a+ ++  vtn 
  MMETSP1061-20121228|15006_1  87 PETLAKLRKAGKKMFFVTNN 106
                  34566677777777777776 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 7.9e-07
    TIGR01656  97 lcdcrKPkpglilealkrlgvdasrslvvGDr.ldDvqaarkaGaaa 142
                     + KP+p +i+ + +++gvd +r ++vGDr ++Dv  +   G++ 
  MMETSP1061-20121228|15006_1 264 PTLVGKPSPLMIDYIESKYGVDRKRICMVGDRlDTDVLFGTDNGLQS 310
                  35567***************************778*99999999886 PP

>> TIGR01456  CECR5: HAD hydrolase, TIGR01456 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.3e-05    0.0032       3      46 ..      68     107 ..      67     135 .. 0.85
   2 ?    3.7   0.0     0.021         5     263     298 ..     286     321 ..     255     337 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.3e-05
    TIGR01456   3 falDiDGvllrGkkpiagaskalrrLvddsgalkiPvllltngG 46 
                  f++D DGv+ rG + i g ++ l +L +  g+    ++++tn  
  MMETSP1061-20121228|15006_1  68 FIFDCDGVIWRGDSLIDGIPETLAKLRKA-GK---KMFFVTNNS 107
                  89************************998.54...468999875 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.021
    TIGR01456 263 fkklymvGDnPksDiiGarqaglfsilvktgvydgk 298
                   k++ mvGD   +D+    + gl s lv  gv  ++
  MMETSP1061-20121228|15006_1 286 RKRICMVGDRLDTDVLFGTDNGLQSLLVLSGVTSEE 321
                  47899*********9988889*******99998776 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.013       3.1       2      34 ..      68     100 ..      67     125 .. 0.80
   2 !   11.8   0.0   0.00021     0.051     109     143 ..     264     301 ..     259     307 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.013
    TIGR01549   2 ilfDidGTLvdseakeealeqtleefsasfkrl 34 
                  ++fD+dG+++  ++   ++++tl++++++ k++
  MMETSP1061-20121228|15006_1  68 FIFDCDGVIWRGDSLIDGIPETLAKLRKAGKKM 100
                  789999999999999999999999988776654 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 0.00021
    TIGR01549 109 epg.sKpepeiflaaleslgle.pevlhvGDn.lsDie 143
                   +  +Kp+p +++++  ++g++ +++++vGD+  +D+ 
  MMETSP1061-20121228|15006_1 264 PTLvGKPSPLMIDYIESKYGVDrKRICMVGDRlDTDVL 301
                  55668***************97357*******999986 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0093       2.3      77     118 ..      83     127 ..      68     139 .. 0.78
   2 !    8.3   0.0    0.0014      0.34     128     186 ..     266     325 ..     251     339 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0093
    TIGR01454  77 fegvpellaelradglgtaiatgksg.pra..rsllealgllell 118
                   +g+pe la+lr+ g ++  +t  s  +ra  +  ++ lgl e+ 
  MMETSP1061-20121228|15006_1  83 IDGIPETLAKLRKAGKKMFFVTNNSTkSRAgyKKKFDGLGLTEVP 127
                  699***************999987752555335677888888765 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0014
    TIGR01454 128 arpkpapdivrealdlldvaaeaavmvgdal.idlasaraagvaavaalwgetdeaella 186
                     kp+p ++    ++ +v  +++ mvgd l +d+  +   g  ++  l g t+e +ll 
  MMETSP1061-20121228|15006_1 266 LVGKPSPLMIDYIESKYGVDRKRICMVGDRLdTDVLFGTDNGLQSLLVLSGVTSEEKLLG 325
                  5679*************************8769***************999999999875 PP

>> TIGR00213  GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.0   0.00023     0.056      27      62 ..      82     117 ..      65     134 .. 0.86
   2 ?    2.5   0.0     0.092        22     105     139 ..     268     303 ..     260     337 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00023
    TIGR00213  27 fidGvidalrelkklGyklvlvtnqsGiarGyftek 62 
                  +idG+ + l +l+k G k+ +vtn+s  +r  + +k
  MMETSP1061-20121228|15006_1  82 LIDGIPETLAKLRKAGKKMFFVTNNSTKSRAGYKKK 117
                  69***************************9888654 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.092
    TIGR00213 105 rkpkpglllqaakelkidleqsfmvGdkle.dlkag 139
                   kp p ++     ++ +d ++  mvGd+l+ d++ g
  MMETSP1061-20121228|15006_1 268 GKPSPLMIDYIESKYGVDRKRICMVGDRLDtDVLFG 303
                  59999999999999*************985355555 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0       0.4        97      94     123 ..      78     108 ..      66     133 .. 0.81
   2 !   12.2   0.0   8.3e-05      0.02     147     198 ..     264     315 ..     248     341 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.4
    TIGR02254  94 ekarllpgAlelleaLkkk.lrlyivtnGvr 123
                  +   l++g  e l +L+k   ++  vtn  +
  MMETSP1061-20121228|15006_1  78 RGDSLIDGIPETLAKLRKAgKKMFFVTNNST 108
                  5567999999999999999889999999765 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 8.3e-05
    TIGR02254 147 daGiekPdkkiFafaleriklkkeevlmvGDsleaDikGaanaGldtvwlnp 198
                   + + kP + + +++  +  + +++  mvGD l++D+  ++  Gl++ ++ +
  MMETSP1061-20121228|15006_1 264 PTLVGKPSPLMIDYIESKYGVDRKRICMVGDRLDTDVLFGTDNGLQSLLVLS 315
                  56688*****************************************988654 PP

>> TIGR02244  HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     6e-05     0.014     189     210 ..      86     107 ..      62     114 .. 0.91
   2 ?   -2.5   0.0       1.9   4.5e+02     289     331 ..     281     322 ..     275     328 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6e-05
    TIGR02244 189 lvklLeklkesGkklfLlTnsd 210
                  ++++L kl+++Gkk+f +Tn++
  MMETSP1061-20121228|15006_1  86 IPETLAKLRKAGKKMFFVTNNS 107
                  7899****************86 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.9
    TIGR02244 289 llkvrgkevLYvGDhiysDvlkskkkrgwrtaliieELeeEvk 331
                     v  k++  vGD + +Dvl  + ++g ++ l+ +  ++E k
  MMETSP1061-20121228|15006_1 281 KYGVDRKRICMVGDRLDTDVLFGT-DNGLQSLLVLSGVTSEEK 322
                  55667789999********99776.777777777777766655 PP

>> TIGR01261  hisB_Nterm: histidinol-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0      0.05        12      34      62 ..      86     114 ..      79     135 .. 0.78
   2 ?    6.8   0.0    0.0039      0.94     102     143 ..     268     310 ..     256     319 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.05
    TIGR01261  34 vipallklkeagyklvlvtnqdGlGtesf 62 
                  +  +l kl++ag k+ +vtn+       +
  MMETSP1061-20121228|15006_1  86 IPETLAKLRKAGKKMFFVTNNSTKSRAGY 114
                  556899**************876555444 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0039
    TIGR01261 102 rkPkiklleeylk.kekidkersyviGdr.etdlqlaenlgirg 143
                   kP   ++ +y++ k  +d++r  ++Gdr +td+ +  + g+++
  MMETSP1061-20121228|15006_1 268 GKPSPLMI-DYIEsKYGVDRKRICMVGDRlDTDVLFGTDNGLQS 310
                  56665555.566515679***********889*99987766665 PP

>> TIGR01509  HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.2     0.013       3.1      59     103 ..      75     121 ..      70     140 .. 0.81
   2 ?    0.2   0.0      0.69   1.7e+02     109     136 ..     267     294 ..     258     297 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.013
    TIGR01509  59 ieeeelkllpgleellealrarg..lallTnspravrlgledkfdkv 103
                  ++++  +l +g+ e+l++lr+ g  +  +Tn++ + r g  +kfd++
  MMETSP1061-20121228|15006_1  75 VIWRGDSLIDGIPETLAKLRKAGkkMFFVTNNSTKSRAGYKKKFDGL 121
                  56778889999999999999987225668***************987 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.69
    TIGR01509 109 sgKPdpdiylqalkklglkpeeclfvdD 136
                  +gKP p +  + + k+g++ +++  v D
  MMETSP1061-20121228|15006_1 267 VGKPSPLMIDYIESKYGVDRKRICMVGD 294
                  79****************9888777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 1957.84
//
Query:       MMETSP1061-20121228|15009_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 1905.23
//
Query:       MMETSP1061-20121228|15023_1  [L=737]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (737 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 2629.08
//
Query:       MMETSP1061-20121228|15066_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|15067_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.17
# Mc/sec: 675.47
//
Query:       MMETSP1061-20121228|15075_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 2043.39
//
Query:       MMETSP1061-20121228|15112_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1277.89
//
Query:       MMETSP1061-20121228|15125_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-133  443.3   0.0   2.4e-133  442.9   0.0    1.1  1  TIGR01064 pyruv_kin: pyruvate kinase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  442.9   0.0  5.9e-137  2.4e-133       1     473 [.     121     599 ..     121     601 .. 0.95

  Alignments for each domain:
  == domain 1    score: 442.9 bits;  conditional E-value: 5.9e-137
    TIGR01064   1 rrtkIvaTiGPateskevlkklldaGvnvvRlNfSHgsheehkkvienvrevaeklgkpvaillDtkGpeiRvgeikk.eevklkkgekvilttdekkeegseekvsvdykslvkdvkeGdkilvdDGkislkVveveedkvivevknggelkskkgvnlpgaevslpalsekDkkdlkfgveqgvdlvaaSFvrkaedvkevrevleekg...akdvkiiaKiEnqegvkn..ideIikasdgimvARGDLGveipaeevpllQkklikkcreagkpvitATqmLdSmiknprPTRAEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekalekktelkerknskakkssieeavalaaveaaekakakaivvltesgrtarllskyrpkapiiavtrnervarqlalsrGvfpvlvd....eeeeelekalkkalellkekgilkkgdlvvviqagavlekeketntikv 473
                  ++tk +aT+GPa++  e+++kl  aG +v RlNfSHg+h ++k+ ++++r v++k ++p+a+l D++Gp++Rvg++++ e   l +g+ + ++ de    g++e+v +  +++++  + Gd++l+dDGk++++Vv +    + +ev++ g++k+kkgvn+p+  +++  l+ kD++dl++ +  gvd+va+SFv++ ed++e+ ++++ ++   a++ +++aKiE+++  +   + +I++  dgimvARGDLGve   e+vp+lQk+++ +cre+gkpv++ATqmL+Smi+ p PTRAE+sDva A++dG+da+MLS+E+a+G+YP e+V ++++i++++e+  ++   l++   + ++ +s ++a++ aa ++a +++akaiv +t  g+ta   s+ rp +pi+a+++  ++ rql ls+G+++ +        +++++++l+ a+e++++kg++++ + ++v++ag ++++ + +n+i+v
  MMETSP1061-20121228|15125_1 121 KKTKQLATLGPASSDFEMIEKLFLAGADVFRLNFSHGEHPQKKELLDIIRAVEQKHDHPIAVLGDLQGPKLRVGQFANpEGEMLVQGQLFRFDLDE--ILGTNERVLLPHPEIIDASEIGDNLLIDDGKVKVRVVGKGPGYLDTEVEVAGRIKDKKGVNTPDSILQISCLTPKDRADLEYMLGIGVDWVALSFVQRPEDIEEIISLITMHNppgAHRPHVMAKIEKPSCFEGdaLAKIVHLCDGIMVARGDLGVECAPEDVPILQKQIVDECREQGKPVVVATQMLESMIESPTPTRAEASDVATAIYDGADAIMLSAESAAGAYPEESVLMQQRIINRVESDPHYDRYLQSF--EPHQDNSAASAIIVAARQIARTVNAKAIVNFTCGGTTALKASQSRPGTPILAISPVMETSRQLSLSWGIYSEFATdyedYDPDNFRDMLRAACEIANDKGLVDSPNDLLVVTAGFPFGTPGASNIIRV 599
                  69****************************************************************************8889999********876..88**********************************************************************************************************9998622256678**********97666***************************************************************************************************************99999995..678999*****************************************************************8876455445678899***************99888888888899**********99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.38
# Mc/sec: 2125.72
//
Query:       MMETSP1061-20121228|15138_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 230.98
//
Query:       MMETSP1061-20121228|15143_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 703.94
//
Query:       MMETSP1061-20121228|15148_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   10.3   1.3      0.038   10.1   0.9    1.0  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.9   9.4e-06     0.038     214     332 ..      32     145 ..      15     159 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 9.4e-06
    TIGR04154 214 fvlivgvfvlvqlvldllrgkspeylaivgavallvaavlvlpfiekslelsltsysllqvlallgvalglvllallarlverkdldrayypaavlglallgllvlalvlpslfsllis 332
                  +++++gv +l+  ++  +rg s+  ++i +a++ll+ ++  ++++ k  +  ++ + ++ v+a+  + ++l+l+++  +   rkd ++  +p++  +++++  l+  ++l  +++ ++ 
  MMETSP1061-20121228|15148_1  32 ILGLTGVLALMCCAVMSTRGLSESFTSIWSAIMLLTLSIGGTMIMRKFHNSMAVGFFMGGVVAMSQMFFFLMLIYI-GY---RKDQKNDGLPVVTETVMAFFCLLQCVLLGTFAA-ILG 145
                  5789999999999999************************999999955555556666665555555444444443.33...699999999999999999888888887777766.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 951.42
//
Query:       MMETSP1061-20121228|15161_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1325.39
//
Query:       MMETSP1061-20121228|15182_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-06   24.9   0.1     0.0019   15.5   0.1    3.1  3  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    0.00035   18.3   0.1     0.0026   15.5   0.0    2.3  3  TIGR00249 sixA: phosphohistidine phosphatase SixA
     0.0061   11.8   0.6     0.0079   11.4   0.4    1.0  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
  ------ inclusion threshold ------
      0.015   12.6   0.2      0.038   11.2   0.0    1.8  2  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.08        82       1      14 [.      31      44 ..      31      47 .. 0.84
   2 !   15.5   0.1   1.9e-06    0.0019      19      78 ..      78     142 ..      67     147 .. 0.83
   3 !    4.9   0.0    0.0034       3.5     118     168 ..     171     221 ..     169     228 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.08
    TIGR03162  1 lyLiRHgevevnkg 14
                 ++L+RH+e e n++
  MMETSP1061-20121228|15182_1 31 IFLVRHAESEENRR 44
                 68******998865 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 1.9e-06
    TIGR03162  19 qtDvpLaekgeeqaaalrekl......edvkfdavvsSplsRcrelAellaeklklpiekddrLrE 78 
                  q D  ++e g++q+a++ ekl      e+  ++ vv Spl+R+r+++e +   + +  + d+ L+E
  MMETSP1061-20121228|15182_1  78 QVDSDVSEIGANQIAHMGEKLrkekfvESSGISLVVHSPLQRARQTSEGML-GCMTASSSDNSLKE 142
                  789999***************66555555667889*************988.56666678888888 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0034
    TIGR03162 118 adfsqRveefleelakeekenvlivtHgGvirallahllglpleqllsiev 168
                  ++f +R+++f   l ++ +e++++v+H+  ++a+l    ++   +++++++
  MMETSP1061-20121228|15182_1 171 KTFLKRISDFERWLGEQPEETIALVGHSQFFKAMLGLDYKFGNCEVWKVDF 221
                  5799*****99999999**************99998888888888887766 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.6   6.1e+02       3      14 ..      31      42 ..      30      47 .. 0.83
   2 !   15.5   0.0   2.5e-06    0.0026      22      70 ..      82     134 ..      73     160 .. 0.85
   3 ?   -0.9   0.0      0.27   2.7e+02      84     107 ..     174     197 ..     138     204 .. 0.70

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.6
    TIGR00249  3 lylmrHGeAkek 14
                 ++l+rH e +e+
  MMETSP1061-20121228|15182_1 31 IFLVRHAESEEN 42
                 8*****998876 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 2.5e-06
    TIGR00249  22 qLtkkGkdeaervaqwLkkag....veldrilvSplvRAeqtaeivadaldes 70 
                  ++++ G ++   +++ L+k++      + ++++Spl RA qt e +  ++ +s
  MMETSP1061-20121228|15182_1  82 DVSEIGANQIAHMGEKLRKEKfvesSGISLVVHSPLQRARQTSEGMLGCMTAS 134
                  57899**************9987777799**************9988887754 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.27
    TIGR00249  84 iglvadyleelkeegvksvllvsH 107
                  ++ ++d+   l e+  ++++lv+H
  MMETSP1061-20121228|15182_1 174 LKRISDFERWLGEQPEETIALVGH 197
                  345788888888888889999999 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.4   7.7e-06    0.0079     676     798 ..      19     150 ..       5     164 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.7e-06
    TIGR01271 676 aalvsysetkkqsfkqpppefaekrksslilnpiasarkfslvqkapskaqa......teiedavselserklslvpedeqgeeslprsn...vfksglqlqarrrqsvlallthssrgenkreklrasvrk 798
                  a ++  s +kk+ f     e +e r+ s +   ++s +kfsl ++a   + +      ++++  vse +  +++ + e+ + e+ +  s    v++s lq   +  + +l  +t ss  ++ +ek+  +v +
  MMETSP1061-20121228|15182_1  19 ADIAGSSPPKKTIFLVRHAESEENRRISALCRTFQSLKKFSLPKTADVSTSTellnvsAQVDSDVSEIGANQIAHMGEKLRKEKFVESSGislVVHSPLQRARQTSEGMLGCMTASSSDNSLKEKRADTVSR 150
                  4456667788999999999***********************99998888887888778899999************99888876655431114555566666667789*****996666666665555544 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.38   3.9e+02       1      14 [.      30      43 ..      30      52 .. 0.79
   2 ?   11.2   0.0   3.7e-05     0.038      26      69 ..      82     131 ..      62     154 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.38
    TIGR03848  1 tvllvrhgrstant 14
                 t+ lvrh+ s +n 
  MMETSP1061-20121228|15182_1 30 TIFLVRHAESEENR 43
                 789*****887764 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 3.7e-05
    TIGR03848  26 eLderGreqaaalaerlad......lpiaaivssPlercretveaiaear 69 
                  +++e G++q a++ e+l++        i+ +v+sPl+r+r+t e ++  +
  MMETSP1061-20121228|15182_1  82 DVSEIGANQIAHMGEKLRKekfvesSGISLVVHSPLQRARQTSEGMLGCM 131
                  466889999999988886522211145889************99988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1534.37
//
Query:       MMETSP1061-20121228|15180_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 2671.78
//
Query:       MMETSP1061-20121228|15204_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00077   17.3   2.6    0.00092   17.0   1.8    1.1  1  TIGR02338 gimC_beta: prefoldin, beta subunit
     0.0054   14.7   5.6       0.82    7.6   3.9    2.2  1  TIGR00293 TIGR00293: prefoldin, alpha subunit
  ------ inclusion threshold ------
      0.026   11.2   0.1      0.044   10.5   0.1    1.2  1  TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit
      0.057    9.5   5.7      0.064    9.4   4.0    1.0  1  TIGR00600 rad2: DNA excision repair protein (rad2)


Domain annotation for each model (and alignments):
>> TIGR02338  gimC_beta: prefoldin, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   1.8     9e-07   0.00092       6     103 ..      19     116 ..      14     123 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 9e-07
    TIGR02338   6 qeqlaqlqqlqqqlqavltqkqqveaelkevekaLeelekleddtkvYksvGnllvktdkeevleeLeekketlelrvktlekQeerlrekleelqek 103
                  q++++++  l+++l +v  +++ + ++l+  + a  el   +d  +v   +G+    t+ e+++e  e  +e +   ++ l+  e+ + e  +el++ 
  MMETSP1061-20121228|15204_1  19 QNNINKFARLNARLREVQEERKIIKQSLERLDDASTELMMSADGDNVMLLIGESFFDTSEEDATEYCEAEVERMTEVLEKLDGEESTILEEQAELKKI 116
                  99******************************************************************999999988999999999999988888875 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   3.9    0.0008      0.82      17     121 ..      24     115 ..       9     120 .. 0.67

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0008
    TIGR00293  17 alqaeiaalraliaeleeaietleslkkaegkevLVpvgaglyvkakvkdadkvlVsiGagyyvekdleeAieilkkkieelekaieklqeelqelaseaqeieq 121
                   + +  a+lr++++e +  ++ le l  a + e++++        a   d d+v+  iG +++   + e+A e++++++e +++ +ekl  e  ++ +e +e+++
  MMETSP1061-20121228|15204_1  24 KFARLNARLREVQEERKIIKQSLERLDDA-STELMMS--------A---DGDNVMLLIGESFF-DTSEEDATEYCEAEVERMTEVLEKLDGEESTILEEQAELKK 115
                  44444444444444444444444444444.4444443........3...56889999999887.67779999999999999999999999998888888888776 PP

>> TIGR01962  NuoD: NADH dehydrogenase (quinone), D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   4.3e-05     0.044     244     279 ..      19      54 ..       7      63 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.3e-05
    TIGR01962 244 geegDsydrylvrveelreslkiieqcleklregpv 279
                  +++ + ++r + r++e++e  kii+q le+l ++ +
  MMETSP1061-20121228|15204_1  19 QNNINKFARLNARLREVQEERKIIKQSLERLDDAST 54 
                  4567899***********************996543 PP

>> TIGR00600  rad2: DNA excision repair protein (rad2)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   4.0   6.3e-05     0.064     646     751 ..       6     109 ..       1     118 [. 0.81

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 6.3e-05
    TIGR00600 646 akeveelesekeesesddkfievdsvlseleeqseslsestdeseeaaeekvevaekeksk.evvellldeeeeeeieemaeeekdlddvknelqdisleelealea 751
                  a e + +e+ +e++++ +kf  +++ l e +e+ ++ ++s +   +a++e   +a+++++   + e  +d +ee++ e     e +++++++ l++ + ee + le 
  MMETSP1061-20121228|15204_1   6 AEEENIMEVRREDQNNINKFARLNARLREVQEERKIIKQSLERLDDASTELMMSADGDNVMlLIGESFFDTSEEDATEY---CEAEVERMTEVLEKLDGEESTILEE 109
                  455667999****************************************************788889999999999887...4556777776666655555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       370  (0.0901999); expected 82.0 (0.02)
Passed bias filter:                      264  (0.0643588); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.33
# Mc/sec: 523.96
//
Query:       MMETSP1061-20121228|15248_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-11   40.2   0.4    3.7e-10   36.0   0.0    2.0  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    3.1e-11   40.1   0.1    4.5e-10   36.2   0.0    2.0  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    0.00035   16.9   0.2      0.019   11.2   0.0    2.7  3  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
     0.0018   15.0   0.1       0.71    6.4   0.0    2.4  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
     0.0028   13.8   0.0     0.0048   13.0   0.0    1.3  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
  ------ inclusion threshold ------
      0.032   10.5   0.0      0.049    9.9   0.0    1.2  1  TIGR03117 cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0   5.4e-13   3.7e-10      24     150 ..      48     184 ..      35     234 .. 0.78
   2 !    2.2   0.0    0.0087       5.9     315     345 ..     382     412 ..     379     439 .. 0.86

  Alignments for each domain:
  == domain 1    score: 36.0 bits;  conditional E-value: 5.4e-13
    TIGR04121  24 aaeegesglliapTGaGKTlavflpsliela...akekpkkglkvlyitPLkaLakdieraleapi....eelgleirvelr.tGDtssserarqr...kkppdiLltTpEslaLllsskdaeklfkdlravvvDElH 150
                  a+++g++ l+ a TG+GKTla  lp l +++   +++++  g++++ + P + L +++ + l++ +    e ++l +  ++r  G+  ++e arq+   +++pd+++ Tp  l   + +    +l ++++++vvDE  
  MMETSP1061-20121228|15248_1  48 AITSGRDLLVRAKTGSGKTLAYCLPLLQKILrssESSNHAPGVRAVVLVPTRELCSQVFKTLQSLVyycdEVISLAVLSATRgRGEKAHQELARQKamlRDRPDVIVATPAGLLTHIRN-GDVNLKESMETLVVDEAD 184
                  67899*************************97655555569**********************998333223455555556634888888878887333579********998655544.445677899******975 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.0087
    TIGR04121 315 GvDfgdvdlviqvGspkgvaRllQRiGRsnH 345
                  G+Df++v  v++v  p ++     R+GR++ 
  MMETSP1061-20121228|15248_1 382 GLDFRNVSFVVNVDFPPSARSYAHRVGRTAR 412
                  99**************************875 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   6.6e-13   4.5e-10      23     191 ..      23     209 ..      18     228 .. 0.81
   2 ?    1.6   0.0      0.02        13     342     390 ..     382     430 ..     377     436 .. 0.88

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 6.6e-13
    TIGR03817  23 pdvvaaleaaGieapwqhqaraaelah.aGehvvvatgtasGkslayllPvlsalaed.......pratalylaPtkalaadqlravkelee.......rdvraatydGdtpaeerewirekaryvltnPdmlhlg..ilpsharWa..kflralryvvvdechsyrG.vfGshvalvlrrlrrlcary 191
                  + +++a+++ G  +p   q +   la  +G++  v + t sGk+lay lP+l+++ ++       p+ +a+ l Pt+ l++   +++++l              ++  G  +++++e +r+ka  +   Pd++  +   l +h r    ++ ++++ +vvde+       +  ++++++r l r+c+ +
  MMETSP1061-20121228|15248_1  23 NRLRKAVQRLGHIRPTLVQSKCLPLAItSGRDLLVRAKTGSGKTLAYCLPLLQKILRSsessnhaPGVRAVVLVPTRELCSQVFKTLQSLVYycdevisL-AVLSATRGRGEKAHQELARQKAM-LRDRPDVIVATpaGLLTHIRNGdvNLKESMETLVVDEADLVLSyGYKDDISEIIRSLPRICQGF 209
                  67899999***99********999996269************************999878888888************************9988766422.22345578899999999999874.6788999875322355666654114556899*******87544147789************865 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.02
    TIGR03817 342 GvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvarddPldt 390
                  G+d   +  vv   fP    s+  ++Gr+ r g + +++ +   d  d+
  MMETSP1061-20121228|15248_1 382 GLDFRNVSFVVNVDFPPSARSYAHRVGRTARGGAKGVALSLVEKDSYDE 430
                  889999999**************************99998888777776 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.014       9.4      25      50 ..      49      74 ..      39      80 .. 0.89
   2 ?   -1.7   0.0      0.22   1.5e+02     187     281 ..     238     332 ..     129     333 .. 0.58
   3 !   11.2   0.0   2.7e-05     0.019     287     330 ..     382     425 ..     377     449 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.014
    TIGR01389 25 vldgrdvlavlPtGGGkslCYqvPaL 50
                 + +grd+l+   tG Gk l Y +P L
  MMETSP1061-20121228|15248_1 49 ITSGRDLLVRAKTGSGKTLAYCLPLL 74
                 7899********************76 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.22
    TIGR01389 187 kdaaefvssfdRenlafsvvkkenkkkqlleylkkere.ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvat 281
                  +da++   s +  + ++++ +k +k+  l  +lk       Gi + +s +   +l+ +Le+  i +    a l  + R +  e+F   +   ++at
  MMETSP1061-20121228|15248_1 238 DDANKNDGSGHLTQFYLELPRK-DKNLVLYVFLKLGLLkGKGIFFVNSTDGGYRLKLFLEQFHIRSSVLNAELPFRSRLNIIEQFNVGNFDYLIAT 332
                  3444433344444443333333.3333445555554433567777777777777777777777777777777777777777777777777777666 PP

  == domain 3    score: 11.2 bits;  conditional E-value: 2.7e-05
    TIGR01389 287 GidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyse 330
                  G+d  +v fv+ +d P +  sy   +GR  R G k  a+ l ++
  MMETSP1061-20121228|15248_1 382 GLDFRNVSFVVNVDFPPSARSYAHRVGRTARGGAKGVALSLVEK 425
                  89999****************************99988776554 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0011      0.75      16      48 ..      41      74 ..      29     332 .. 0.71
   2 !    6.4   0.0     0.001      0.71     289     333 ..     382     426 ..     377     450 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0011
    TIGR00614 16 qlevin.avlegrdalvvmatGgGksLCyqlpav 48
                 q + +  a+ +grd lv   tG Gk L y lp +
  MMETSP1061-20121228|15248_1 41 QSKCLPlAITSGRDLLVRAKTGSGKTLAYCLPLL 74
                 5565551345799*****************9965 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.001
    TIGR00614 289 GinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapa 333
                  G++  +v fv+  + p s  sY   +GR  R g k  ++ + ++ 
  MMETSP1061-20121228|15248_1 382 GLDFRNVSFVVNVDFPPSARSYAHRVGRTARGGAKGVALSLVEKD 426
                  88999****************************999888776543 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     7e-06    0.0048     260     287 ..      48      75 ..      26     129 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 7e-06
    TIGR01407 260 elteeekslIeAatGtGKtlgYLLpaly 287
                  ++t  +++l+ A tG+GKtl+Y Lp+l 
  MMETSP1061-20121228|15248_1  48 AITSGRDLLVRAKTGSGKTLAYCLPLLQ 75 
                  56777899*****************985 PP

>> TIGR03117  cas_csf4: CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   7.2e-05     0.049      13      69 ..      49     112 ..      43     142 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.2e-05
    TIGR03117  13 lelkrialveaatGvGktlamllaaea.llke......rpdakvaiavPtlalldqlleeyerl 69 
                  +  +r +lv a tG Gktla+ l  ++ +l++       p+ + ++ vPt  l  q+++ ++ l
  MMETSP1061-20121228|15248_1  49 ITSGRDLLVRAKTGSGKTLAYCLPLLQkILRSsessnhAPGVRAVVLVPTRELCSQVFKTLQSL 112
                  5677889**************998654267752222224678999***********99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.41
# Mc/sec: 2182.65
//
Query:       MMETSP1061-20121228|15279_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 507.12
//
Query:       MMETSP1061-20121228|15281_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 1094.23
//
Query:       MMETSP1061-20121228|15292_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|15308_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|15307_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-09   35.5   0.0    3.8e-09   34.4   0.0    1.5  1  TIGR02909 spore_YkwD: uncharacterized protein, YkwD family


Domain annotation for each model (and alignments):
>> TIGR02909  spore_YkwD: uncharacterized protein, YkwD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   9.3e-13   3.8e-09      11     125 ..     222     340 ..     218     342 .] 0.87

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 9.3e-13
    TIGR02909  11 LvnaerakngLkpLkvdeelskvarlksedma.dknyfshtsPtyGspfdmlkkfGi......syraaGeniaagnstvekvvealmnseghraniLspeyteiGvglvksgsygklwvqlf 125
                  +vnaer+ + + pL+ + ++ ++ar  ++ ma d++ f+ ++P       +lk+  +      +++  G ni    +t ++v++ +m + + r+ni +++++++G+g+ + +++  ++ q+f
  MMETSP1061-20121228|15307_1 222 MVNAERTTRVVPPLRRERHMDRIARDHAKLMAeDRDLFQIETPR--DLQRLLKEMDVdsnelpDFTRLGMNIG-RGKTIAEVHRFMMAALAERNNIRDKRFSHMGMGTHQDKNGYLYMCQIF 340
                  79****************************973689*****997..4556666666532222568999*****.778999*********************************999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.44
# Mc/sec: 1025.92
//
Query:       MMETSP1061-20121228|15356_1  [L=989]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-25   85.9  11.8    2.1e-22   77.1   1.8    2.9  2  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   1.3   4.9e-06      0.02      24     111 ..      50     137 ..      28     152 .. 0.81
   2 !   77.1   1.8   5.1e-26   2.1e-22     125     554 ..     206     674 ..     204     677 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.9e-06
    TIGR04154  24 segevlfsgnDpwYhlReieytvenfpn..tlwFDpytnyPyGtevgfgpLfdllvAtlalivGlgapsqetietvalllpvvlgalvvi 111
                  +e  +++ + Dp++++R  ey+ ++  +    wFD +  yP G+ vg  ++++ +  t  +i  +    + +i+ ++ ++p+ +g+l+ +
  MMETSP1061-20121228|15356_1  50 KEYGLVIHEFDPYFNYRAAEYLWQHGSSkfFKWFDYMSWYPLGRPVG-TTIYPGMQFTSVWIK-MFILPNMSINDICCYVPAWFGVLATM 137
                  445578899**************997762257**************9.899999999999997.66666677888888999999988654 PP

  == domain 2    score: 77.1 bits;  conditional E-value: 5.1e-26
    TIGR04154 125 tGllaalllavlpgqflsrslvGflDHhiaEvlfstlavlalllalkvaeeeklskerdldalkkplayavlaGialalylltwppavlfvlivgvfvlvqlvldllrgkspeylaivgavallvaavlvlpfiekslelsltsysllqvlallgvalglvllallarlverkdldrayypaavlglallgllvlalvlpslfsllisnllrfffgatataltiaEaqpllleegelslaralsefglafllalaglllllyrllkkkskaeelfvlvWsvfilvatltqvRFeYylavnvavlsAylls..wll.........................................................leelkkelkkskkskkeketkkask...............ivvvvllilllvllvpsv....................aaaaaqssgpggankdWedsleWlkenTPdtgldyygiYeekddfdypeesYGVlSWWDYGhwItvigeRipna 554
                  ++ + a+++a +p+++l rs+ G +D   + +  + l+  + + +l+ ++            +k +++++ ++G++++ ++ +w + v+++ ++g+ +l+ l+l  +     e+l +  +   +v + l +++      + l s++ l ++ +++ + gl+l+ + ++ + + d+++    ++++ +++++ +vl+l +  +f  + s + + f+++t+t +      +   e+++ s ++ ++ +++   la +g+ ++ + ++     +e  f++v+ ++  ++ l+ vR   + a +++++ +++l+  w++                                                         +e +kk+++k+k+           +               + v++ +  +++ ++p                      ++ +++++g+   + d +++  Wl++nTP+                       ++ WWDYG  It i++R  +a
  MMETSP1061-20121228|15356_1 206 AATFTAIIMATIPAHLL-RSVGGGYDNESVATTAMQLTFWTWICTLSAST------------TKMAVILGTVSGFMYFYMVAAWGGYVFVINLIGLHALFVLLLRKMP---FEQLYFSYTTFYFVGTFLAMQVPVV-GWTPLKSLEQLGPFGVFVGMQGLMLMRFCEKKFPKVDKRKVRGGVILAFVLAAIPVVLVLYSRGYFGPISSRVRGLFVKHTKTGNPLVDSVA---EHQKASSEAYFQYLHVVCHLAPIGFGIVSLIACT----PESSFLIVYGIASYFFSLKMVRLILLAAPIASICGGIVLGyaWAWsvggifgenrpslesvlfpqepesgasavvpieedpdfdffdddskkkskhtngksgKEGKKKKSSKKKS-----------AvqestsksepswvrcVRVAIGIYCIIFKVIPQKsefvkmchaiaqqishptiiVKGQNRETGEVVVVDDYREAYFWLRDNTPTDA--------------------RIMAWWDYGYQITGIANRTTIA 674
                  57789************.********999999999999999999988554............44567******************************99888776554...4455554444444433333322222.34567788999999999999***********888888888888888888888888899999999***8888888888777777666555555...5677999*******************99988877....************************99999999*******96655599****************************************9999877777665542222222222222...........12233333455676775555555555555556557888888888888888887888888888889999***************988....................39****************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (989 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.40
# Mc/sec: 3263.43
//
Query:       MMETSP1061-20121228|15371_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.6   0.3    0.00023   18.9   0.2    1.3  1  TIGR02820 formald_GSH: S-(hydroxymethyl)glutathione synthase


Domain annotation for each model (and alignments):
>> TIGR02820  formald_GSH: S-(hydroxymethyl)glutathione synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.2   5.7e-08   0.00023      24     101 ..       7      87 ..       3     102 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 5.7e-08
    TIGR02820  24 ckckskkvkvkvkaqsahnhacGcskcwkpegaifsv..vavvprdnvevvanaeklkvvdesatiqryackecGvh.lyG 101
                   kck   ++ ++++  + n  c c  c    g+  s+     ++ dn ++++ +e++k+ +   +++ + c+ecG   + G
  MMETSP1061-20121228|15371_1   7 GKCKCGCIEFELNGAPMMNVLCHCNNCTTGLGCGCSIhlYLAATSDNWSITKGEEHVKMFEGGGALRFWRCTECGSPvMQG 87 
                  567778899*******************998876665114567899*****************************852555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 912.45
//
Query:       MMETSP1061-20121228|15379_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 444.59
//
Query:       MMETSP1061-20121228|15393_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   13.3   0.8       0.15    9.0   0.1    2.1  2  TIGR03723 bact_gcp: putative glycoprotease GCP


Domain annotation for each model (and alignments):
>> TIGR03723  bact_gcp: putative glycoprotease GCP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.0    0.0028        11     233     285 ..      51     100 ..      32     115 .. 0.66
   2 !    9.0   0.1   3.7e-05      0.15     191     274 ..     172     255 ..     163     275 .. 0.88

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0028
    TIGR03723 233 adiaasfqeavvdvlveklkralkktklktlvvaGGvaaNsalrekleelaek 285
                   d+++ f++  +++   +++ a  +++++++ ++G v   ++lr+ l ++ ++
  MMETSP1061-20121228|15393_1  51 DDVCKVFDRLFMEM---QAVLAQLSHTVQQIQMSGQVIPEQQLRQLLITEYQR 100
                  55555555544432...333444456899***************999877543 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 3.7e-05
    TIGR03723 191 kafklprpllekkeldfSFsGLKtavlnlveklkeeeeelekadiaasfqeavvdvlveklkralkktklktlvvaGGvaaNsa 274
                  + +++  p+++ ++ ++ F  L  a+++lv++ k+++++l+   +a+++q   + v  +k ++alk+ +++++     + aNs+
  MMETSP1061-20121228|15393_1 172 EPIEILSPQKTIETAEIYFDSLTGAMRELVKNFKDAGKNLSDPSVAQQLQMEFAGVANDKGEEALKEIGITQMQFQKSIEANST 255
                  556677777777889999******************************************************999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.36
# Mc/sec: 1030.25
//
Query:       MMETSP1061-20121228|15403_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   11.0   8.7      0.045   10.6   6.1    1.2  1  TIGR00237 xseA: exodeoxyribonuclease VII, large subunit


Domain annotation for each model (and alignments):
>> TIGR00237  xseA: exodeoxyribonuclease VII, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   6.1   1.1e-05     0.045     321     429 ..      48     160 ..      26     163 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.1e-05
    TIGR00237 321 ekqlertrqkktrltkrleqlnpspklkraqtrleqlerrlnkllnaqlkekrekfgtlvgklnalspLevlaRGys.ial....neegkaiksvkqveegdlltiklkdGvie 429
                  + +le+   k t+  k+ ++     k      ++++l++r+ ++++aql +  + ++t+ +k n++  L +++ G   ++     ++ +++++ + +++e++ l+ +++d  + 
  MMETSP1061-20121228|15403_1  48 KVRLEQDDAKITARAKKAKAEGN-TKAALNLLKIRKLKTREVETVEAQLLNVLQMVQTIDSKQNEVKVLAAMKEGKDtLQRmheeTTVDHVLNLMDEIQEQHELEQEMNDILVG 160
                  44677777777777777776432.233334789******************************************751443211233455666677899999999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       450  (0.109703); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1403.88
//
Query:       MMETSP1061-20121228|15410_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 533.46
//
Query:       MMETSP1061-20121228|15413_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|15431_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 2065.92
//
Query:       MMETSP1061-20121228|15471_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1979.84
//
Query:       MMETSP1061-20121228|15467_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1176.42
//
Query:       MMETSP1061-20121228|15519_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1367.03
//
Query:       MMETSP1061-20121228|15546_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   13.9   0.0     0.0029   13.7   0.0    1.0  1  TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB
  ------ inclusion threshold ------
      0.021   10.2   0.1      0.021   10.2   0.1    1.0  1  TIGR03928 T7_EssCb_Firm: type VII secretion protein EssC


Domain annotation for each model (and alignments):
>> TIGR03938  deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.4e-06    0.0029     179     251 ..       4      75 ..       3      85 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.4e-06
    TIGR03938 179 kRirkDlkksaelikkktgkaprvlvWPYgaynekaleiakklGmkvaltLedgvntvdkslaelrRlLvene 251
                  kR++k ++  ++ i  +++k+ rv +W Y+ ++++ +         +++tL+d v+  +    e+ R+L++ +
  MMETSP1061-20121228|15546_1   4 KRVKKVMTLPINVIFGHLQKKTRVRIWLYEDTKTQIEGQIIGFDEYMNMTLDDAVEIGK-TRIEVGRILLKGD 75 
                  79999999999******************9988877766666666799******99888.999******9987 PP

>> TIGR03928  T7_EssCb_Firm: type VII secretion protein EssC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.1     1e-05     0.021     948    1022 ..      11      89 .]       4      89 .] 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1e-05
    TIGR03928  948 slgiylvlt.agrqnavrakllnniktkialylidksevrsivGrekleleeik...GRalikkdeltlfqtalpvkge 1022
                   +l i +++  +++++ vr  l+++ kt+i  ++i   e+++++    +e+ +     GR+l+k d  tl+q a p k+e
  MMETSP1061-20121228|15546_1   11 TLPINVIFGhLQKKTRVRIWLYEDTKTQIEGQIIGFDEYMNMTLDDAVEIGKTRievGRILLKGDAITLIQEAHPEKKE 89  
                   5666666642577899**************************999988876643337******************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 559.38
//
Query:       MMETSP1061-20121228|15560_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.22
# Mc/sec: 2189.82
//
Query:       MMETSP1061-20121228|15571_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-13   48.3   0.0    4.6e-13   47.1   0.0    1.6  1  TIGR01068 thioredoxin: thioredoxin
    3.9e-10   37.8   0.0    1.4e-09   36.1   0.0    1.9  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    8.7e-08   29.9   0.1    8.7e-08   29.9   0.1    2.3  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    4.5e-05   20.9   0.0    0.00013   19.5   0.0    1.7  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0053   14.3   0.0      0.014   13.0   0.0    1.7  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
  ------ inclusion threshold ------
       0.48    6.5  12.6       0.62    6.1   8.7    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   6.7e-16   4.6e-13       4      97 ..      10     100 ..       7     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 6.7e-16
    TIGR01068   4 enfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGakpkaalkeli 97 
                  +++++ v+++ ++ lv f A+WCgpC +  P le++ake  +kv v  +   +  e  +++++r+ Pt +lf +g e++rv G++  + +k++i
  MMETSP1061-20121228|15571_1  10 DELKSFVEKN-TVGLVTFSAHWCGPCNASKPQLEQIAKES-GKVPVSIVYESDIGEYLHTFNVRAFPTYILFFKGTEAQRVEGVNL-QGVKNMI 100
                  5667777775.699***********************765.5899999999999999**************************986.4455555 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.1   0.0     2e-12   1.4e-09       3      90 ..       9      90 ..       7     106 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.1 bits;  conditional E-value: 2e-12
    TIGR01126  3 aenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeG 90
                 a++++++v  +n + lv f a WCG C +  P+ e++ake  k    v ++ v      e  ++f+v++fPt  +f kg++ +++ eG
  MMETSP1061-20121228|15571_1  9 ADELKSFVE-KNTVGLVTFSAHWCGPCNASKPQLEQIAKESGK----VPVSIVYESDIGEYLHTFNVRAFPTYILFFKGTE-AQRVEG 90
                 678899998.8999************************98764....67777766666677789********988888875.555555 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.1   1.3e-10   8.7e-08       7     112 ..       8     111 ..       3     205 .. 0.71
   2 ?   -3.9   4.0       2.4   1.6e+03     142     207 ..     306     366 ..     275     394 .. 0.40

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.3e-10
    TIGR01130   7 tkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpRea..egivkylkkqsgPas 112
                  t++++++++++n + Lv+F A WCG C + +P+ e+ A+    +s kv +  v   +  e  + ++v+ +Pt  +f +g++++  +G   +  +++++   +++gP+ 
  MMETSP1061-20121228|15571_1   8 TADELKSFVEKNTVGLVTFSAHWCGPCNASKPQLEQIAK----ESGKVPVSIVYESDIGEYLHTFNVRAFPTYILFFKGTEAQRVEGVNLQgvKNMIEAYADKAGPSI 111
                  578999***************************998665....55578888888888899999*********888888998888888542211444444455566655 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 2.4
    TIGR01130 142 elvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkkkkeeekeekveeeletdveale 207
                   + ++ l++ +++r+++++v ++++e++ ++++++  ++   +++ e  +++k + ++++  e+le
  MMETSP1061-20121228|15571_1 306 VQLKALLKAKRAEREEAEKVDHTEREKQRRFMGKEMAQT---REEME-IEKRKRDAQMRK-REKLE 366
                  223334444444444444444444444333333322111...11111.111112222221.12222 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.9e-07   0.00013      58      94 ..      14      52 ..       3      80 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.9e-07
    TIGR00385 58 evlkkgklvLlnvwasWCptCraehplLkelakeg..lr 94
                   ++k  + L+ + a WC++C+a  p L+++ake   ++
  MMETSP1061-20121228|15571_1 14 SFVEKNTVGLVTFSAHWCGPCNASKPQLEQIAKESgkVP 52
                 467899999************************963444 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.1e-05     0.014      18      93 ..      18      88 ..       5      98 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.1e-05
    TIGR02187 18 knpvelvvFtdeskekCeyCeetkqlleelsevsdklkleiydldteedkekvekykvervPtvileeegskdiei 93
                 kn v lv F+    + C  C+  k  le++++ s k+ ++i++    +  e  + ++v + Pt il  +g+++ ++
  MMETSP1061-20121228|15571_1 18 KNTVGLVTFSA---HWCGPCNASKPQLEQIAKESGKVPVSIVYES--DIGEYLHTFNVRAFPTYILFFKGTEAQRV 88
                 56788888877...67*************************9988..57789**************9999988776 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   8.7   0.00091      0.62     210     415 ..     176     386 ..     127     413 .. 0.68

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00091
    TIGR00934 210 sedvksdtsadesis.slrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdees..........sesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksn 415
                  ++dv   t a e+ s   ++d    k+ ++++ +    + +++  ++  +  +s  + + +h+ +a i d is+  + ++ ++ +s          s+ + + e + +++++s+ e+ +q ++  +a++k+ +  + + l ++k  +r ea  +++++r+k+ + m +    a++r++ +++kr+++ +++++ + ++k +r++   + +kd+ +++
  MMETSP1061-20121228|15571_1 176 KDDVM--TDAPEQKSpVENLDPVAIKTLTEEMGFTLI-RAQKGLLYSSGKTVESAVEWLMEHQDDADIDDPISDDSTGESGDKAQSykcnecgkilSNMANL-ELHANKTGHSDFEESTQAAKCLTAEEKAAKIVQLKALLKAKRAEREEAEKVDHTEREKQRRFMGK--EMAQTREEMEIEKRKRDAQMRKREKLEQKRERERIRAELEKDKRERM 386
                  22222..333344442234555555555555555444.3444455555566666666666777778888888777777777777766666666655554444.45567789999999999999999999999988888888888888888888888888885555544..578889999999***********999999999988887766665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       412  (0.100439); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.18s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 1979.84
//
Query:       MMETSP1061-20121228|15587_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   15.4   0.0     0.0013   15.2   0.0    1.1  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103


Domain annotation for each model (and alignments):
>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.2e-07    0.0013     401     456 ..      24      81 ..      11     109 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.2e-07
    TIGR03103 401 evlGdgkssvreliekqsrrr..aaatgGesriPldeeterclreaGleledvleega 456
                    +G+g++ +reli+k+s     aa  + es+ Pl +ete   +    ++++v++++a
  MMETSP1061-20121228|15587_1  24 ARIGEGRTIIRELIAKESPANnhAAKDDSESKTPLPDETENENAVPLPTFNEVMHHDA 81 
                  558**************975411555679**********9877766666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 947.92
//
Query:       MMETSP1061-20121228|15588_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1319.89
//
Query:       MMETSP1061-20121228|15585_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-68  229.4   0.6      2e-68  228.7   0.4    1.2  1  TIGR00225 prc: C-terminal processing peptidase
    7.8e-42  141.1   1.1    1.1e-41  140.6   0.8    1.1  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
    1.1e-05   22.4   0.1    2.1e-05   21.4   0.1    1.5  1  TIGR02037 degP_htrA_DO: peptidase Do
      0.001   15.9   0.2     0.0016   15.2   0.1    1.2  1  TIGR00054 TIGR00054: RIP metalloprotease RseP


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  228.7   0.4     2e-71     2e-68      14     312 ..     263     579 ..     252     588 .. 0.90

  Alignments for each domain:
  == domain 1    score: 228.7 bits;  conditional E-value: 2e-71
    TIGR00225  14 evetaikeilaslndpytrylskeeakelsettsgeleGiGiqvqmedd.eivivs.plegsPAekagikpgDkIikvdgksvagmelddavelirGkkgtk.vkleierag............kkktlelelkrekiele.tvkaevkkve..gkkvgyirissFsehtaedvkkalkklekkkikglilDLRgNpGGllqeavelarlflkkgkivsvkdrngekeveykangkqkl....klplvvlvdrgsASAsEilagAlkdnkravivGektfGKGtvQqvrelndgsglkvTiakyytpngksiqkkGiepdi 312
                  + +++++e+++sl d ytr l+k++++ +++    +l G+G+++  + + +i++ + p++gs   kag+k+gD +++v+g ++ g +  d++++i  ++++k v+ +i+r +             ++t+ ++++r+++e++ +v+ ++ +++  g+kvgy+r+s+F++ +  ++++al++l+k++++++++DLRgN+GG++q+a+e++ lfl +    +v+d n+ +   +++ + q l    ++plvv +d++sASAsE+lag l+dn rav +Gek+fGKG++Q v  l++g+gl vT+aky tp+g++iq kGi+pd+
  MMETSP1061-20121228|15585_1 263 KSMKIVTEMVQSLGDKYTRILDKDQYAAIQK---FDLIGVGVTLMPNAQkDIIVGApPIAGSASDKAGLKVGDFVTAVNGIPTRGRNAFDIIDQIGENPNAKqVSFSILRDKgpstidsignpqASETFVVTMERQTMEVKdPVQFKISETRsdGTKVGYVRVSEFNTLVNSSLQRALSELKKQGANAYVMDLRGNTGGAFQSAIEISSLFLRDRVATYVVDSNQVEL-PFRTPKLQDLsidpETPLVVWIDGMSASASEVLAGSLHDNCRAVTMGEKSFGKGLIQAVYGLKNGAGLVVTVAKYITPDGSEIQGKGITPDV 579
                  568899***********************96...79********98776355554438*************************************87776644*******9989999999988889999**********9647877665544339*************************************************************999999998776.5655555444366799***************************************************************************8 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   0.8     1e-44   1.1e-41     157     405 ..     316     582 ..     280     627 .. 0.85

  Alignments for each domain:
  == domain 1    score: 140.6 bits;  conditional E-value: 1e-44
    TIGR03900 157 rvlpetPAaraGlkakDrivkideestvnmdlndavdrlRGpvdt.kvtitvrRe............GldeakrleleRavikve.sVeaklLegn.....vGyvrlktFsantteeleaalqdlrskaqlkGlVlDlRgNpGGLLeqAievsdkFlsqGtiVstvgaserr..eekkakedtseeakvPvvvlVdegSASAsEiVaGalknlDRaviiGrqtFGKGsVqvlrdatsadksaLKLtiAqYltpGDvsiqevGvvPDielv 405
                   ++ ++  ++aGlk  D +++++   t   +  d +d++  ++++ +v+  + R+              +e+  +++eR+ ++v+  V+ k+ e       vGyvr+++F+    + l+ al++l++++ ++  V+DlRgN GG  + Aie+s +Fl + +   +v  ++ +   +  + +d s   ++P+vv +d  SASAsE+ aG+l+++ Rav +G ++FGKG +q ++    ++ + L +t+A+Y+tp   +iq+ G++PD+  +
  MMETSP1061-20121228|15585_1 316 PPIAGSASDKAGLKVGDFVTAVNGIPTRGRNAFDIIDQIGENPNAkQVSFSILRDkgpstidsignpQASETFVVTMERQTMEVKdPVQFKISETRsdgtkVGYVRVSEFNTLVNSSLQRALSELKKQG-ANAYVMDLRGNTGGAFQSAIEISSLFLRDRVATYVVDSNQVElpFRTPKLQDLSIDPETPLVVWIDGMSASASEVLAGSLHDNCRAVTMGEKSFGKGLIQAVYG--LKNGAGLVVTVAKYITPDGSEIQGKGITPDVLPL 582
                  578999999*****************************98888763799***9999899888884333456667899******962589999887677888****************************.9****************************99888887776655456677899999************************************************9..9999**************************9433 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.1   2.1e-08   2.1e-05     268     327 ..     319     380 ..     306     443 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.1e-08
    TIGR02037 268 kgspAekaGlkaGDvilkvngkkik..saadlreaigtlkpgkkvklkilRkgkekeikvtl 327
                   gs+++kaGlk+GD +++vng + +  +a d+  +ig+ +  k+v+++ilR+  + +i+   
  MMETSP1061-20121228|15585_1 319 AGSASDKAGLKVGDFVTAVNGIPTRgrNAFDIIDQIGENPNAKQVSFSILRDKGPSTIDSIG 380
                  689******************9886225667889******************9999997543 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.5e-06    0.0016     164     272 ..     266     385 ..     243     440 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.5e-06
    TIGR00054 164 dvrkqlaekagevsveilaerenitleeeke.......lkelgpkielvlsdvvdnspaekaGlkeGDkilkidgeklk..swrdlvklvkenp.eksleikveRng..etlslklvpeak 272
                  ++ + +++  g+  + il  +++++  ++ +       l++   k  +v +     s+ +kaGlk GD +  ++g + +  +  d++ ++ enp  k+++  + R+   +t+++   p+a 
  MMETSP1061-20121228|15585_1 266 KIVTEMVQSLGDKYTRILD-KDQYAAIQKFDligvgvtLMPNAQKDIIVGAPPIAGSASDKAGLKVGDFVTAVNGIPTRgrNAFDIIDQIGENPnAKQVSFSILRDKgpSTIDSIGNPQAS 385
                  4666677778888888855.555554444455667766888888777777778889999****************9886226679999999986258899999998612344444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 2402.20
//
Query:       MMETSP1061-20121228|15591_1  [L=533]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (533 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.48
# Mc/sec: 1465.63
//
Query:       MMETSP1061-20121228|15590_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-18   64.0   0.5    4.3e-18   63.4   0.3    1.2  1  TIGR02840 spore_YtaF: putative sporulation protein YtaF


Domain annotation for each model (and alignments):
>> TIGR02840  spore_YtaF: putative sporulation protein YtaF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.3     1e-21   4.3e-18       3     182 ..       5     190 ..       3     198 .. 0.81

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 1e-21
    TIGR02840   3 llllalavslDslgvglaYglrkikipflslliiavisallllvsmllGkllakilpvkvaeilgaiiLiaiGlwiilqalrkkkeekkrssekklkk...elkslglvieilrepevadlD....kSgeisvkEallLgiaLsldalgaGigasllglsplalsilvavislifvslGlklGkkva 182
                    llala+s D+++vgl+ g+ +  ++f  +++i+++ a    v+ + G++l + lp+ v   l++i    + l+  +++l+   ++ k+  ++k+++   + ++ ++ ++ l+++++  +D    +S ++++  a+ L++ ++l++l+ G+  + +g+spl   +  +v s++++ lG ++G ++a
  MMETSP1061-20121228|15590_1   5 AFLLALASSTDNFMVGLSVGVANKSLSFGVNALISICNATGAWVAGFGGSTLGQNLPPYVSPLLSTITFGGLALREFVDFLETVRKKLKSMRKEKVDHqssDYNKRDTTKH-LETDTSSFIDtsrsSSSNLDISRAIQLAFPMTLNNLAGGVAGGAIGVSPLEAGLYGLVASFLTMALGHRIGIRLA 190
                  579***************************************************************999888888877776544433333333333331114555555555.666666555511214579****************************************************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 1759.85
//
Query:       MMETSP1061-20121228|15589_1  [L=547]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-18   62.6   0.0    4.9e-18   62.2   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00073   16.9   1.5     0.0018   15.6   0.1    2.3  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   2.4e-21   4.9e-18       3     183 ..     280     461 ..     278     499 .. 0.89

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 2.4e-21
    TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshak.....vLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRge.pvtaksDlYaWGLivleCL 183
                  +++ aik+l++ + ++ +  +    e+ +  + +hPn+v+L +  ++ d  ++ v e+     l     ++  L+ +   +++  +L  +++ h++G+ h DLkP+ni+++++ ++++ak     + DFG+  +    ++  ++ + r++   G+P + aPe +  +      +D+++ G i+le  
  MMETSP1061-20121228|15589_1 280 QERFAIKILKKSNIKRFKDLKQIATEVHVLTAYRHPNVVHLQEVIHTVD-NIYMVTELCF-MDLH-KYHNEIGLSIESARQVIFGILQPISHLHSHGICHLDLKPENILLTKSLDSHNAKyefvrICDFGLVNMAKRSDK--NKDIIREGYACGTPGFYAPEMILQDrFEGRSADMWSLGCIILEIT 461
                  6789*************************************99999998.8999999875.4454.4678888****************************************99999976666699****998776555..899*****************865540556778**********975 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.14   2.9e+02      43      92 ..     127     176 ..     120     217 .. 0.73
   2 !   15.6   0.1     9e-07    0.0018      95     141 ..     358     413 ..     339     421 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.14
    TIGR03724  43 RtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleeke 92 
                  R r+E r   ++ ++  n  + ++ + +++k  ++ ++g++ kdl+ ++ 
  MMETSP1061-20121228|15589_1 127 RLRNELRKSCRLLDMERNKNLALKCKLDDTKSRLQSVQGSQSKDLILKEY 176
                  66777777777777777777777777777777778888877777776643 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 9e-07
    TIGR03724  95 llkevGelvgklHkagivhgDlttsNiivk.........ddklyliDfGLgkkske 141
                  ++  + + +++lH++gi+h Dl ++Ni+++          + + + DfGL ++ k+
  MMETSP1061-20121228|15589_1 358 VIFGILQPISHLHSHGICHLDLKPENILLTksldshnakYEFVRICDFGLVNMAKR 413
                  55556677999******************756666543333455778988776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (547 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 2256.19
//
Query:       MMETSP1061-20121228|15593_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 933.70
//
Query:       MMETSP1061-20121228|15595_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.31
# Mc/sec: 2388.58
//
Query:       MMETSP1061-20121228|15594_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   14.9   0.3      0.013   12.7   0.2    2.1  1  TIGR00383 corA: magnesium and cobalt transport protein CorA


Domain annotation for each model (and alignments):
>> TIGR00383  corA: magnesium and cobalt transport protein CorA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   3.1e-06     0.013     228     295 ..     558     631 ..     479     649 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 3.1e-06
    TIGR00383 228 lqlleiietyrellsslmdlylslvsikmNeimkiltvvstifipltfiagvYGMN....FkfmPe..lewkyG 295
                  ++ l+ i+ + e +s+l d+ + +  +k       ++++s  +  +t ++gv+GMN    F++ P   l+  yG
  MMETSP1061-20121228|15594_1 558 SNALDLIQGQVETASDLIDARMDATRNKFLLASLCMSIASLSLTAMTCVGGVFGMNlrtgFEETPAmfLKVTYG 631
                  445789999********************99999**********************555555777622444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 2449.13
//
Query:       MMETSP1061-20121228|15592_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 1051.02
//
Query:       MMETSP1061-20121228|15596_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1639.86
//
Query:       MMETSP1061-20121228|15599_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   15.1   0.2        1.1    7.7   0.0    3.3  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.38   1.6e+03      97     113 ..     188     204 ..     168     207 .. 0.74
   2 !    3.0   0.0    0.0078        32      41      86 ..     242     287 ..     233     291 .. 0.79
   3 !    7.7   0.0   0.00027       1.1      47     111 ..     320     385 ..     317     390 .. 0.90

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.38
    TIGR02795  97 ktlqevikrYPkssaak 113
                  k ++e++++Y++++ a 
  MMETSP1061-20121228|15599_1 188 KEIDEIVQNYANADPAT 204
                  45677888888877765 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0078
    TIGR02795  41 AqYwlGealyakkkykdAakaflevvkkypksekapdallklgesl 86 
                   +Y lG + +++++  dA  +f+ +++    +  ++  l k ++ +
  MMETSP1061-20121228|15599_1 242 LYYALGMVRMSQEDHVDALMEFRRAIQVAALGLGVAHDLTKAATYM 287
                  4799*******************99997777777777766666655 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.00027
    TIGR02795  47 ealyakkkykdAakaflev.vkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssa 111
                   +ly+ +++++A +++ e+ + ++p+s+  +    k++++++e g++ kA ++  ++   Y ++++
  MMETSP1061-20121228|15599_1 320 DVLYESGNINQALAEYTELnFLHDPDSQVQARIRTKIASIFEERGEHIKAIQVWADLLVLYDDTPS 385
                  578999**********98746789*******************************99999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2086.44
//
Query:       MMETSP1061-20121228|15600_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1472.19
//
Query:       MMETSP1061-20121228|15598_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.6e-154  512.7   0.7    2.8e-85  284.8   0.0    3.1  3  TIGR00389 glyS_dimeric: glycine--tRNA ligase
    2.4e-13   47.7   0.1    2.1e-06   24.7   0.0    3.2  3  TIGR00409 proS_fam_II: proline--tRNA ligase
      3e-11   40.7   0.0    1.1e-05   22.4   0.0    3.2  3  TIGR00418 thrS: threonine--tRNA ligase
    8.9e-11   39.2   0.0    9.5e-08   29.2   0.0    2.2  2  TIGR00408 proS_fam_I: proline--tRNA ligase
    7.8e-07   26.2   0.0     0.0038   14.1   0.0    2.3  2  TIGR00442 hisS: histidine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00389  glyS_dimeric: glycine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.8   0.0   3.4e-88   2.8e-85       3     230 ..      60     334 ..      58     340 .. 0.92
   2 !   57.4   0.0   2.6e-19   2.2e-16     274     342 ..     340     409 ..     333     417 .. 0.88
   3 !  169.0   0.0   4.1e-53   3.4e-50     422     564 ..     414     559 ..     409     560 .. 0.95

  Alignments for each domain:
  == domain 1    score: 284.8 bits;  conditional E-value: 3.4e-88
    TIGR00389   3 reklvsllkrrgflfqsfeiYgGlaglvDygPlGaelknnikkawrkffileee.vlevdspiltpeevlkasGHvdkFtDalveckkckevfRaDhlveevlekeleg..........................................lsgkelkellek..ydincPkckgenleevrsfnLlFeteiGvsg..kkkgylRPEtAqGiFinFkkllefkreklPFgvaqiGksfRnEisprqgllRvrEFeqaEiefFvdPeekshekFee 230
                  +e++vsl krrg +f+s+eiY+G ag++DygPlGaelk+n+k+ w+k+f++++e v+ +ds+i+ +   +k+sGH+d F+D++v+ck++k ++RaD+l  + +  + ++                                          +s ke+ +  e+  ++i  P  +  +l+++r+fnL+Fet++G++   ++ +ylRPEtAqGiFinFk++l+++r+k+PFg+aq+Gk+fRnEi+pr++++R rEFeq+E+e+F+ P ++  ++F++
  MMETSP1061-20121228|15598_1  60 MEEIVSLCKRRGIIFPSSEIYNGYAGFFDYGPLGAELKKNLKDVWWKHFVTQREdVVGLDSSIIHNPTTWKSSGHLDGFSDPMVDCKETKLRYRADQLFFSPVILQGDEnkeiigyvcvqegnddemvkaaktmakkllkekdlkgsrieaFSFKEVVDATEEelTQIPSPASGKPTLTAPRDFNLMFETRVGAAVdsENIAYLRPETAQGIFINFKNVLNSSRQKIPFGIAQMGKAFRNEITPRNFIFRSREFEQMEVEYFIPPGDDVWPEFHQ 334
                  89************************************************98877******************************************988765544444579************************************99977777766666522589999999999****************976567889******************************************************************9999974 PP

  == domain 2    score: 57.4 bits;  conditional E-value: 2.6e-19
    TIGR00389 274 vkrFll.eigidedklrfrqhlknelAHYAkdcwDaelktsyGwiEvvGiadRtdyDLkqHskkskkels 342
                   + Fl+ ++g+ ed +    h+   lAHYA +c+D+ +++++G +E++Gia R++yDL+qH++ s+k+l 
  MMETSP1061-20121228|15598_1 340 SRDFLVeKVGLREDLMGWDVHEGDGLAHYARACTDVTFTFPFGTQELMGIAARGNYDLTQHTEGSGKNLG 409
                  5678862699********************************************************9874 PP

  == domain 3    score: 169.0 bits;  conditional E-value: 4.1e-53
    TIGR00389 422 vvkvekyiPsviEpsfGidRiiyallehsyqkev.deeeRevlrlkpkvaPikvlvlplv.nkeelkeiakeiakaLrkeeiiikyddsgsiGkrYaraDeiGtpfavtiDfetleDet.vtlReRdslkqvRvkieelvsalkkl 564
                  ++++e+yiP+viEps+G+dR+++a+++++y +++  +e+R++l++ p +aPik +vlpl+ nk +l+e+a++++++L+ +++ + yd +g++G+rY+raDe+G+pfa+t+Dfet+eD++ vt+R+Rd+++q R  i+e++ +l+k+
  MMETSP1061-20121228|15598_1 414 EETKERYIPHVIEPSLGVDRLMLAVICSAYAEDEvGGEKRNFLKFAPCIAPIKAVVLPLLkNKPQLVEVARDLFEKLQARGYNVMYDAAGAVGRRYRRADEVGIPFAITVDFETVEDDAgVTIRDRDTTEQIRLPIDEVIPYLSKK 559
                  6789***************************9998***********************9725668**************************************************98755**********************9875 PP

>> TIGR00409  proS_fam_II: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.028        23      32     100 ..      79     149 ..      53     156 .. 0.84
   2 !   17.3   0.1   4.4e-07   0.00036     119     155 ..     276     313 ..     256     322 .. 0.86
   3 !   24.7   0.0   2.6e-09   2.1e-06     446     567 ..     429     558 ..     406     559 .. 0.78

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.028
    TIGR00409  32 irrlasGlynylPlalrvlekvenivreem..nkagaievllpalqsaelWqesgRwdkygeellrlkDrk 100
                  i++  +G ++y Pl+    ++++ +  ++   ++++ +    + + +  +W++sg +d +++ ++  k+ k
  MMETSP1061-20121228|15598_1  79 IYNGYAGFFDYGPLGAELKKNLKDVWWKHFvtQREDVVGLDSSIIHNPTTWKSSGHLDGFSDPMVDCKETK 149
                  677779*********99999999998777533667777788888999***********9999888777655 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 4.4e-07
    TIGR00409 119 kneiksYk.qlPvnlYqiqtKfRDEiRPRfGllRgREF 155
                  kn+++s + ++P  + q+ + fR+Ei PR  ++R+REF
  MMETSP1061-20121228|15598_1 276 KNVLNSSRqKIPFGIAQMGKAFRNEITPRNFIFRSREF 313
                  67776655169**************************9 PP

  == domain 3    score: 24.7 bits;  conditional E-value: 2.6e-09
    TIGR00409 446 iGvsRlvsaivEqkr..DekG......iiWpkaiAPyevvivvsnvkdeeqkklaeevyselkakgvdvllDdrneraGvkfrdseliGiplavvvGkksldnk.eiEvkkrrngekqlikkaelkevlek 567
                  +Gv Rl+ a++   +  De G      + ++  iAP + v+++   ++ +  ++a +++++l+a+g++v++D     +G + r  + +Gip+a++v  ++++++  + ++ r + e+  + ++e+ ++l+k
  MMETSP1061-20121228|15598_1 429 LGVDRLMLAVICSAYaeDEVGgekrnfLKFAPCIAPIKAVVLPLLKNKPQLVEVARDLFEKLQARGYNVMYDAA-GAVGRRYRRADEVGIPFAITVDFETVEDDaGVTIRDRDTTEQIRLPIDEVIPYLSK 558
                  678887777775443114444333333567789**********999999**********************975.669******************99988665168999999999988888888887765 PP

>> TIGR00418  thrS: threonine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0   6.3e-05     0.052     176     254 ..      66     149 ..      49     162 .. 0.77
   2 !    4.6   0.0    0.0033       2.7     240     298 ..     244     302 ..     178     348 .. 0.77
   3 !   22.4   0.0   1.3e-08   1.1e-05     469     564 ..     461     559 ..     410     560 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.3e-05
    TIGR00418 176 lgkeleLfsfeeevg...pGlvlwlpkGalirklledfvrekllkr..gyeevetPiladlelweisghldkykermfrfkeee 254
                  l k+++++  + e+    +G++ + p Ga ++k l+d + ++ +++  +   + + i+ + + w+ sghld +++ m   ke++
  MMETSP1061-20121228|15598_1  66 LCKRRGIIFPSSEIYngyAGFFDYGPLGAELKKNLKDVWWKHFVTQreDVVGLDSSIIHNPTTWKSSGHLDGFSDPMVDCKETK 149
                  55666665555555411167888999***********887776554115666789**********************9877765 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0033
    TIGR00418 240 ldkykermfrfkeeeekelvlkpmnCpghilifksslrsyr.dLPlrlaelgvvhRyEks 298
                     ++ r   +  + e+  +l+p +  g +  fk+ l s r ++P+ +a++g  +R+E  
  MMETSP1061-20121228|15598_1 244 NLMFETRVGAAVDS-ENIAYLRPETAQGIFINFKNVLNSSRqKIPFGIAQMGKAFRNEIT 302
                  55555555544443.47788***************99988736***************75 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 1.3e-08
    TIGR00418 469 wLaPvQvrvipvs...ekhldyakkvaeklkkegirvdvddrneklgkkiReaqkekipyvlvvGdkEvee.eavtvRerkeekkekmsleellekvrke 564
                   +aP+ ++v+p      + ++ a+++ ekl+++g  v  d  +  +g + R a    ip+ + v  + ve+   vt+R+r+  ++ +++++e++  + k+
  MMETSP1061-20121228|15598_1 461 CIAPIKAVVLPLLknkPQLVEVARDLFEKLQARGYNVMYDAAG-AVGRRYRRADEVGIPFAITVDFETVEDdAGVTIRDRDTTEQIRLPIDEVIPYLSKK 559
                  48*********97322357899***************999765.7*******************9999999899*******************9887765 PP

>> TIGR00408  proS_fam_I: proline--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.7   0.0   0.00037       0.3      96     152 ..     256     314 ..     243     320 .. 0.77
   2 !   29.2   0.0   1.2e-10   9.5e-08     241     380 ..     414     559 ..     398     563 .] 0.77

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00037
    TIGR00408  96 Leekla.lRP.tsEtvlynlykkwvksyrdLPlklnqivnvfRyEkkhtrPll.RtrEfl 152
                   +e++a lRP t+  ++ n+ +    s + +P+ + q+ + fR E   +r ++ R rEf 
  MMETSP1061-20121228|15598_1 256 DSENIAyLRPeTAQGIFINFKNVLNSSRQKIPFGIAQMGKAFRNEIT-PRNFIfRSREFE 314
                  555555489956666777777777888999*****************.888866999996 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 1.2e-10
    TIGR00408 241 nkegekayay..qtsyGlstRvigaliliHs.DdkG......LvlPpkvapiqvvvipiifkkkenkkvlelarkveekLkkleiRvelderdnrpGkkfskaElkGiPlrlevgpkdiekna.vvvlrRdekkKvevsldeleekvkel 380
                  +++ e+++++  + s G+   +++++ +  + D+ G      L + p +api+ vv+p+  k+k   +++e+ar + ekL++ ++ v  d      G+++ +a+  GiP+ + v+ + +e +a v++  Rd+++++ +++de+   + + 
  MMETSP1061-20121228|15598_1 414 EETKERYIPHviEPSLGVDRLMLAVICSAYAeDEVGgekrnfLKFAPCIAPIKAVVLPL-LKNK--PQLVEVARDLFEKLQARGYNVMYDAA-GAVGRRYRRADEVGIPFAITVDFETVEDDAgVTIRDRDTTEQIRLPIDEVIPYLSKK 559
                  445555555422357777777777777665425566566666778899**********4.4433..47***************999988865.579********************9999876377888***********9998776665 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.1   8.6e-05     0.071      74     128 ..     262     321 ..     244     346 .. 0.78
   2 !   14.1   0.0   4.6e-06    0.0038     333     405 ..     476     548 ..     428     549 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 8.6e-05
    TIGR00442  74 aLRpelTapvvRavve..nklelkkpfklyyigpvFRyErpqkG...RyRqFhQldvevv 128
                   LRpe   ++   + +  n++++k pf + ++g+ FR+E   +    R R+F Q++ve +
  MMETSP1061-20121228|15598_1 262 YLRPETAQGIFINFKNvlNSSRQKIPFGIAQMGKAFRNEITPRNfifRSREFEQMEVEYF 321
                  58999888887665441144445559*************55544444**********986 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 4.6e-06
    TIGR00442 333 deeaeaealklaeklrkagirvevdlegkklkkqlkyadkkgakfvvilgedelekg.kvtlkdletgeqeeva 405
                  + +  + a +l ekl+++g++v +d +g+ +++++++ad+ g++f+++++ + +e++  vt++d +t eq +++
  MMETSP1061-20121228|15598_1 476 KPQLVEVARDLFEKLQARGYNVMYDAAGA-VGRRYRRADEVGIPFAITVDFETVEDDaGVTIRDRDTTEQIRLP 548
                  3445667889999**********999996.**********************99986469********998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.16s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 1857.75
//
Query:       MMETSP1061-20121228|15602_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2639.78
//
Query:       MMETSP1061-20121228|15603_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       508  (0.123842); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 2503.39
//
Query:       MMETSP1061-20121228|15608_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 534.24
//
Query:       MMETSP1061-20121228|15606_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 2309.81
//
Query:       MMETSP1061-20121228|15605_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 1934.47
//
Query:       MMETSP1061-20121228|15607_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1853.13
//
Query:       MMETSP1061-20121228|15610_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1562.75
//
Query:       MMETSP1061-20121228|15612_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 491.96
//
Query:       MMETSP1061-20121228|15609_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 1279.04
//
Query:       MMETSP1061-20121228|15611_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.39
# Mc/sec: 1814.00
//
Query:       MMETSP1061-20121228|15613_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.8   0.1       0.14    9.5   0.0    2.1  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   3.4e-05      0.14     100     149 ..     120     167 ..      74     179 .. 0.56
   2 ?   -0.8   0.0     0.049     2e+02      49      65 ..     184     200 ..     177     212 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 3.4e-05
    TIGR02521 100 dvlNNYGtFLcqqk.kyeeAeqqfeaAiedpkYeqparsyeNaglcalkag 149
                  +v+ N G+  ++   + + A+++fe Ai   +Y     +y N++l+al++g
  MMETSP1061-20121228|15613_1 120 EVHVNIGAVYFKDIeNEDLAKHHFELAI---QYRPIGTAYVNLALIALRKG 167
                  4444555444444434444555555555...34444555555555555555 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.049
    TIGR02521  49 kAkenlekAleldpkda 65 
                  +A+ nlekA+ l+ +++
  MMETSP1061-20121228|15613_1 184 EARSNLEKAIGLNDSEQ 200
                  68888888887765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.85
# Mc/sec: 346.28
//
Query:       MMETSP1061-20121228|15615_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1651.86
//
Query:       MMETSP1061-20121228|15616_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 691.37
//
Query:       MMETSP1061-20121228|15614_1  [L=897]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-12   42.5  14.7     0.0032   13.4   0.3    8.1  8  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0   0.00071       2.9     132     160 ..     209     237 ..     141     239 .. 0.91
   2 !    5.3   0.0   0.00022      0.91     130     163 ..     240     273 ..     237     278 .. 0.89
   3 !    3.7   0.0   0.00065       2.6     120     156 ..     296     332 ..     277     340 .. 0.87
   4 !    5.7   0.1   0.00016      0.67     129     157 ..     374     402 ..     309     420 .. 0.68
   5 !    7.2   0.1   5.7e-05      0.23      23     158 ..     346     470 ..     334     550 .. 0.65
   6 !   11.5   0.1     3e-06     0.012      46     156 ..     467     602 ..     437     607 .. 0.81
   7 !   13.4   0.3   7.8e-07    0.0032      57     160 ..     651     751 ..     606     782 .. 0.72
   8 !    2.0   0.1    0.0022       8.9      58     156 ..     758     855 ..     750     861 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.00071
    TIGR00870 132 italilAihkqnyeivklLlekgasvear 160
                   tali A+    + i klL++ g +v+a+
  MMETSP1061-20121228|15614_1 209 LTALIPAASSGHLDICKLLVKEGIDVNAK 237
                  69***********************9985 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.00022
    TIGR00870 130 kgitalilAihkqnyeivklLlekgasvearakg 163
                   gital+ A +    ++v+ L+e+ga+v+a a  
  MMETSP1061-20121228|15614_1 240 DGITALMEASIMGHEKVVEFLIENGADVNAVASS 273
                  699**************************98865 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.00065
    TIGR00870 120 andestseftkgitalilAihkqnyeivklLlekgas 156
                   n+e++++   gi+ l+ A++    + v++Lle+ga+
  MMETSP1061-20121228|15614_1 296 NNAEASNTRVDGISTLMTAAIGGHSQAVEILLENGAD 332
                  57888999999************************98 PP

  == domain 4    score: 5.7 bits;  conditional E-value: 0.00016
    TIGR00870 129 tkgitalilAihkqnyeivklLlekgasv 157
                    g + li+A+ +  + +v+ Ll++ga+ 
  MMETSP1061-20121228|15614_1 374 NTGFSSLIIAAAHGHVDTVEYLLDNGAQA 402
                  3578999******************9975 PP

  == domain 5    score: 7.2 bits;  conditional E-value: 5.7e-05
    TIGR00870  23 kaiergdlalvkrkleeaklveklnincvdrlgrsallsaaieneneelteLllkke.egevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasve 158
                  +a+e+g +a++k  l++    ++++in + + g s+l+ aa+ + ++ ++ Ll +      v d+ + a++     +  +++++l  + +               + t+g tal  A     ye + lL+e+g ++ 
  MMETSP1061-20121228|15614_1 346 SAAENGTVATLKAILDN--VDDPDYINLISNTGFSSLIIAAAHGHVDTVEYLLDNGAqADVVHDNKVTALMYAAAAGHLDAMKMLIGKGKA----------DLEFKHTNGGTALLEASTAGMYEAIVLLVESGSNID 470
                  67777777777777777..337777777777777777777777777777777777664233444444444443333333333333333322..........223345677777777777777777777777777776 PP

  == domain 6    score: 11.5 bits;  conditional E-value: 3e-06
    TIGR00870  46 lnincvdrlgrsallsaaieneneelteLllkke...............egevGdalLhaiskelvdaveailllllkaarksltls..........elandestseftkgitalilAihkqnyeivklLlekgas 156
                  +ni+ +d  g ++l+ +a++++ + l+ +l +++                 + G a+++a++ +  +   +++ l ++++    +            e    ++ +    g tal++A +   +e+vk+Ll  g++
  MMETSP1061-20121228|15614_1 467 SNIDFMDDDGVNPLMAIAAQGNAKALKFMLDQLRkmksdaelkdyinlfAHSGGSAVMFAAAGGHTECAKQLMDLGAEINAVARNKDgyleklqkmiEEGQVQEEDPHVDGVTALHVASEGGHLEMVKALLSAGVE 602
                  78889999999999999*********9999999999999***999999888889999999998888888888887776665544444566677644444444555566789********************99975 PP

  == domain 7    score: 13.4 bits;  conditional E-value: 7.8e-07
    TIGR00870  57 sallsaaieneneelteLllkke......egevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasvear 160
                  + l+ +ai  enee + Ll +k       + +   +lL     +l d+v a+l+  + + ++      ++          git+l  A  +    +vklL++ +a+++a+
  MMETSP1061-20121228|15614_1 651 NLLF-DAIMVENEEFALLLIEKGadiyhsDEKKVTTLLQTSHRGLTDVVKALLEKHASNGSN----GDYV----DAASEDGITPLTAASSEGHTDCVKLLVDAKADINAK 751
                  4455.888899999988888888875544333334555555555555555554444444422....2233....2334569**************************965 PP

  == domain 8    score: 2.0 bits;  conditional E-value: 0.0022
    TIGR00870  58 allsaaieneneelteLllkke.....egevGdalLhaiskelvdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgas 156
                  +l+ aa+   +++++++ l        +   G ++L+ + +  ++ ve + +  ++  ++ +       +++ +   ++  ++i  + k+   +v lL+++ga+
  MMETSP1061-20121228|15614_1 758 SLM-AASARGHFDVVSIILAAGanvneQNVDGHTALMFAYN-GKNQVETLWERYNQFVEEAK----SNSESKEDVDDNDTGPIIQEALKNHTALVDLLIKSGAD 855
                  555.6666667777777777666777667779999999998.56666666665555555534....33455555566788899999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (897 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.57
# Mc/sec: 2041.28
//
Query:       MMETSP1061-20121228|15617_1  [L=782]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 3559.15
//
Query:       MMETSP1061-20121228|15618_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 2206.86
//
Query:       MMETSP1061-20121228|15621_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-08   30.4   9.1    7.1e-08   29.9   6.3    1.1  1  TIGR01297 CDF: cation diffusion facilitator family transporter


Domain annotation for each model (and alignments):
>> TIGR01297  CDF: cation diffusion facilitator family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   6.3   1.7e-11   7.1e-08       6     188 ..      20     203 ..      18     208 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.7e-11
    TIGR01297   6 lialllnlllmvveivggllagSlAllaDaaHslsDvaaliiallalrisrkpa.derhpfGygraeiLaallnalflvvvalfilyeAierlin.peeeiegslmlivaivglivnlilalllkraGkkesslalraaalhvlsDllsSvgvligvlliyfg.gwkiaDpiaslvisvlilktaf 188
                  + + +l+++++ + i  +l++gS   l  ++++ +D+++++++l+ +++       ++++   +r e  a+++++++l+++++ ++  +   +++ pe  +e++ +l++++++++v  +l +++ +     ss  l  + + +l  ++   + l  +l+i    +++++Dp+++++ ++  l++++
  MMETSP1061-20121228|15621_1  20 WWSTALTVVFASAGIGLYLTTGSAMCLVFGLENCVDFLSSVVVLWRFWATGTMTkEKEKS--LKRRELRASMAISIILMILGFGVIATSSFDIVSgPETKKEMDFVLVMSGISILVFGVLCIFKFHYSDVLSSESLYKDGVCSLIGTMLASALLANTLIIEKRpDVWWLDPCVAMICGFSALFIGI 203
                  77999*******************************************988765245555..9******************99999888888888799999*************************99999999999988888877777777777777777668************9998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1649.86
//
Query:       MMETSP1061-20121228|15620_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.24    8.0   5.0       0.15    8.7   0.4    1.9  2  TIGR03998 thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC


Domain annotation for each model (and alignments):
>> TIGR03998  thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.4   3.7e-05      0.15     373     451 ..      21     100 ..      18     113 .. 0.90
   2 ?    1.5   0.3    0.0054        22     395     476 ..     122     203 ..     102     212 .. 0.63

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 3.7e-05
    TIGR03998 373 vtlierkveklLeklqlsvee.laegveelkervleeqaeeeidalfeeakeqikaalkelkeelakvdatleklaekne 451
                  + l++r+ ++  + l +++++ ++e+ ++l+ ++++++++e++ ++ e + + +++  +++ e l+++ ++++kl+e n+
  MMETSP1061-20121228|15620_1  21 IALLDRESKQRQKFLGVELYDlIEEQHQALRDEAAKHENPEQLVENCESVLAVFRNVERAISEPLEACRRDVQKLVEGNA 100
                  5667777777778889999**99****************************************************99886 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.0054
    TIGR03998 395 aegveelkervleeqaeeeidalfeeakeqikaalkelkeelakvdatleklaekneakitkqvefLekrlerairrkedee 476
                    + + l er++e+++ e++  + ++  +++++  ++l+e ++++  +  ++++ +e  +++ ve+ +k +    ++++++e
  MMETSP1061-20121228|15620_1 122 VSEPQWLHERLMEDTKGENFSLNEKAIGSTMNKMARSLAEGAKTTITKAIGMLSPEERAVESCVERAKKDVATLKAEQDQKE 203
                  5556666677777777777766666666677777777777666666666666666666777777766666654444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.35
# Mc/sec: 837.19
//
Query:       MMETSP1061-20121228|15619_1  [L=610]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (610 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2776.32
//
Query:       MMETSP1061-20121228|15623_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 1425.48
//
Query:       MMETSP1061-20121228|15624_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.41
# Mc/sec: 1307.01
//
Query:       MMETSP1061-20121228|15622_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2922.62
//
Query:       MMETSP1061-20121228|15625_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 3188.04
//
Query:       MMETSP1061-20121228|15626_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.3   0.0     0.0011   16.2   0.0    1.0  1  TIGR02872 spore_ytvI: sporulation integral membrane protein YtvI
  ------ inclusion threshold ------
       0.05   11.7   1.0      0.064   11.4   0.7    1.2  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR02872  spore_ytvI: sporulation integral membrane protein YtvI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   5.5e-07    0.0011      58     152 ..       7     104 ..       1     106 [] 0.74

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 5.5e-07
    TIGR02872  58 vlllfliiivllltilvtelvkelialakklpq...ylseikeaikkllkeleslleslpeevqktikenietlleklanqvaelakklitsilsfla 152
                   ll fl++i +ll+    +      +l +  ++   +l+++ ++i+k l++ ++  ++l+++ +k++k+++++ + ++ ++ +el +k i+++l + +
  MMETSP1061-20121228|15626_1   7 KLLSFLLVIAGLLSAEAGSSNMTREKLLEDRKKkvvHLEHAMKQIQKQLDDYHKGHKRLDQNRVKSLKNRLASYKGQIYDYSKELSEKEIEELLGYHS 104
                  567777777777777766655555555555444011566667777777777777889*******************************9999988765 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.7   3.1e-05     0.064       6      89 ..       8      89 ..       4      99 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.1e-05
    TIGR03495  6 llvllllalglqsqrlrearaslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqql.aqaeallaqrekrierLlr 89
                 ll++ll+ +gl s +   a  s+ + ek l+  ++++ + + ++++++++++  ++  ++L+q++ ++++++la+++ +i +  +
  MMETSP1061-20121228|15626_1  8 LLSFLLVIAGLLSAE---AGSSNMTREKLLEDRKKKVVHLEHAMKQIQKQLDDYHKGHKRLDQNRvKSLKNRLASYKGQIYDYSK 89
                 777888888888777...5556666677888888888888889999999999999999999987526788888888888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       335  (0.0816675); expected 82.0 (0.02)
Passed bias filter:                      239  (0.0582643); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 608.30
//
Query:       MMETSP1061-20121228|15629_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1245.29
//
Query:       MMETSP1061-20121228|15628_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       391  (0.0953194); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.71u 0.13s 00:00:00.84 Elapsed: 00:00:00.75
# Mc/sec: 1145.67
//
Query:       MMETSP1061-20121228|15627_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1370.17
//
Query:       MMETSP1061-20121228|15632_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 958.36
//
Query:       MMETSP1061-20121228|15631_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-14   50.1   0.9    4.7e-14   50.1   0.6    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.2e-07   27.3   0.1    4.2e-07   27.3   0.0    3.3  3  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
     0.0008   16.9   0.0      0.039   11.3   0.0    2.2  2  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
     0.0022   15.5   0.5     0.0022   15.5   0.3    1.8  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
     0.0032   13.8   0.0      0.045   10.1   0.0    3.7  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
  ------ inclusion threshold ------
      0.017   12.2  35.0      0.027   11.5  24.2    1.2  1  TIGR02794 tolA_full: protein TolA
       0.05    9.7   7.2      0.062    9.4   5.0    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
       0.19    8.5   0.0       0.19    8.5   0.0    2.7  3  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
        7.3    1.9  26.5        9.4    1.5  18.4    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   8.1      0.06        27      76     118 ..      41      84 ..      17      90 .. 0.37
   2 !   50.1   0.6     1e-16   4.7e-14      67     295 ..     140     389 ..     112     409 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.06
    TIGR01622  76 rereker.rredevrrkrkeredrrerrek.eer.lkeelteeeRD 118
                  ++++ke+ +++++++  +ke+++++e++ek e++  ++++  +e D
  MMETSP1061-20121228|15631_1  41 KKEKKEKkEKKEQKE--QKEKKEKKEKKEKkEKKaKRQKVDHDEDD 84 
                  222222111111222..22222222222221111133333333333 PP

  == domain 2    score: 50.1 bits;  conditional E-value: 1e-16
    TIGR01622  67 rkrresererereker.rredevrrkrkeredrrerrekeerlkeelteeeRDartvfvlqlalklreRdlkEFFskvg.....kvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqase.........AEKNraakaatelsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFGe....i..elvqlqkDpetGrskGyGFiqFsdaeeak...eAleklNGlelAGReikvgl 295
                   ++     +r+r+++r r+ +  +     ++d  + +++ ++++++  +    + t+fv  ++   ++  ++EFF +       +v + rl   +  +r +G + v F  ++s ++Al+l+G+ l  + + +qa++            Nr  +  ++ + + p   +   +Yv nl ++ tE ++  +     +    i  ++v++ +++ t +skG+ +i F+ ++ a+   +A +k N + + GR ++  +
  MMETSP1061-20121228|15631_1 140 PTDATATTKRKRKRKRkRKAEAAEANGSDNDDDDDENNNGDNTEQDGGDGALVQDTIFVEGIPFDSNHEAVREFFVQTHgipdsEVLELRLPTWQDTGRLRGFGHVRFGSKSSYETALGLSGKYLGRRYLTIQAANrpgsaggsgSSGNRSGRSVEDPGLECP--EGCCTIYVNNLPYEATESSIASVVSKHTKpnlsIdeDNVRIARNSVTRQSKGFAYIDFESSKDAQrfmKAATKKN-VTVGGRIVRLDY 389
                  44555555555555553455555655555555555555567899999999999**********************88632333378889999999******************************99999999865222211111567888885555555777..78899*****************9976653221143257********************99988872224555544.788888888776 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -8.3   8.3         9   4.1e+03     262     283 ..      45      66 ..      14     165 .. 0.58
   2 !    4.8   0.0    0.0061       2.8     320     363 ..     234     276 ..     196     279 .. 0.84
   3 !   27.3   0.0   9.3e-10   4.2e-07      28      75 ..     339     388 ..     306     401 .. 0.71

  Alignments for each domain:
  == domain 1    score: -8.3 bits;  conditional E-value: 9
    TIGR01628 262 aeReaelkakfeelkqerkeka 283
                  +e+++  ++k +++k+e+kek+
  MMETSP1061-20121228|15631_1  45 KEKKEKKEQKEQKEKKEKKEKK 66 
                  1111111111111111111111 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0061
    TIGR01628 320 dekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqr 363
                  +++++ +gFG V f s++    A+  l gk l+++ L +  A+r
  MMETSP1061-20121228|15631_1 234 QDTGRLRGFGHVRFGSKSSYETAL-GLSGKYLGRRYLTIQAANR 276
                  578999************999998.599*********9999987 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 9.3e-10
    TIGR01628  28 lsvRvCrDsvtrrSLgYaYvNfqnladAerAldtlnykn..lkgkpiRlm 75 
                   +vR+ r+svtr+S g+aY+ f++ +dA+r + ++  kn  ++g+ +Rl 
  MMETSP1061-20121228|15631_1 339 DNVRIARNSVTRQSKGFAYIDFESSKDAQRFMKAATKKNvtVGGRIVRLD 388
                  379**************************988755444311789999985 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.023        11      91     171 ..     195     277 ..     186     286 .. 0.70
   2 !   11.3   0.0   8.6e-05     0.039      92     150 ..     308     372 ..     294     395 .. 0.58

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.023
    TIGR01661  91 nlyvsGlPktmtqkeleslfspfGkiitsrils.....dnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfannP 171
                   ++v G+P     + + ++f +   i  s +l       + t+  +G G +rf  ++  ++a+ +l G+        +t++ an P
  MMETSP1061-20121228|15631_1 195 TIFVEGIPFDSNHEAVREFFVQTHGIPDSEVLElrlptWQDTGRLRGFGHVRFGSKSSYETAL-GLSGKYL--GRRYLTIQAANRP 277
                  5788999999888888888888777777777651111145677999*******9999988886.5666543..2344555555555 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 8.6e-05
    TIGR01661  92 lyvsGlPktmtqkeleslfspfGkiits......rilsdnvtdlskGvGfirfdkreeadraika 150
                  +yv  lP + t + + s+ s++ k   s      ri  ++vt +skG  +i f+  ++a+r +ka
  MMETSP1061-20121228|15631_1 308 IYVNNLPYEATESSIASVVSKHTKPNLSidednvRIARNSVTRQSKGFAYIDFESSKDAQRFMKA 372
                  45555555555555555555555432222222225666666666666666666666666555543 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.3   4.8e-06    0.0022     107     181 ..     305     387 ..     248     400 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.8e-06
    TIGR01659 107 gtnlivnylpqdmtdrelyalfrtig.p...i..ntcrimrdyktgysfgyafvdfaseadsqraiksl..ngitvrnkrlkv 181
                     + vn lp + t+  + ++      p   i  +  ri r+  t  s g+a++df s  d+qr +k+     +tv  + +++
  MMETSP1061-20121228|15631_1 305 CCTIYVNNLPYEATESSIASVVSKHTkPnlsIdeDNVRIARNSVTRQSKGFAYIDFESSKDAQRFMKAAtkKNVTVGGRIVRL 387
                  4556788888888888887776443313222222468***************************9987511456665555554 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -14.6  19.3         9   4.1e+03       4     120 ..      46     168 ..      40     186 .. 0.59
   2 !    9.6   0.0   0.00014     0.062     296     373 ..     193     274 ..     174     279 .. 0.85
   3 !   10.1   0.0   9.8e-05     0.045     298     354 ..     307     369 ..     299     388 .. 0.66

  Alignments for each domain:
  == domain 1    score: -14.6 bits;  conditional E-value: 9
    TIGR01642   4 ekdrerEksrerdrdkskeRsRkRsrdrsrdRdRdrrdrr......rsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkppk 120
                  ek+ ++E++ +++++  ke++ k+++  +r++  + +d +       + ++++   ++  +    ++ + ++   +  d + +++  + ++++e      +++++ k+k ++k    + + ++
  MMETSP1061-20121228|15631_1  46 EKKEKKEQKEQKEKKEKKEKKEKKEKKAKRQKVDHDEDDElvsglpPAFYEEKSANEKHAEPPSPPKADADSNADAVADVDASDEPATGKGETEPTDATATTKRKRKRKRKRKAEAAEANGSD 168
                  333334444444444444444444444444443333333311111134666666666666666667777778888889999999999999999999999998888888666665555544444 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00014
    TIGR01642 296 edklyignLPldlkddqvkeLLes.FG....dLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                  +d ++++++P+d + + v+e   +  G    +++   l   ++tG  +G++ + +   s  + A+ +L G+ lg + L+++ A
  MMETSP1061-20121228|15631_1 193 QDTIFVEGIPFDSNHEAVREFFVQtHGipdsEVLELRLPTWQDTGRLRGFGHVRFGSKSSYETAL-GLSGKYLGRRYLTIQAA 274
                  689*****************87552554433567778888899*******************997.9*************998 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 9.8e-05
    TIGR01642 298 klyignLPldlkddqvkeLLesFG......dLkaFnliKdlatGlsKGyaFceykdssvtdlA 354
                   +y++nLP++ ++  +  ++ +        d     + +++ t +sKG+a+++++ s +++  
  MMETSP1061-20121228|15631_1 307 TIYVNNLPYEATESSIASVVSKHTkpnlsiDEDNVRIARNSVTRQSKGFAYIDFESSKDAQRF 369
                  577777777777777777776654221111223456777777777777777777777777654 PP

>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5  24.2   5.9e-05     0.027     114     242 ..      42     165 ..      26     208 .. 0.40

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.9e-05
    TIGR02794 114 aeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEa................e..eakkkaeaeak.KakaeaeaKakae......eakaKaeaeAkaKAeaeAkaKaeaeakakakaeaerka 242
                  +e++ k++++++k++ e+k+k  +E+k k+e++a                    k ++                        e  + +k ae     Ka a+  a a a+       a  K e+e     +a A  K ++++k+k kaea ++ 
  MMETSP1061-20121228|15631_1  42 KEKKEKKEKKEQKEQKEKKEK--KEKKEKKEKKA--------------------KRQKVD-----HdeddelvsglppafyeEksANEKHAEPPSPpKADADSNADAVADvdasdePATGKGETE---PTDATATTKRKRKRKRKRKAEAAEAN 165
                  222222222222222222222..22222222222....................222222.....122232444444444421222233333333334444444333333333332344444433...23333334444333433333333333 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   5.0   0.00014     0.062     169     298 ..      30     208 ..      11     390 .. 0.42

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00014
    TIGR00934 169 rtrtqvslprksakrddfqekl.fsGelvkrdeq.dsvhsdqnsedvksdtsadesis...slrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheata.............kirdk.....iseanslaaesdeesses.............................r 298
                   +rt    +  ++++++ +ek   + + +k++++ ++ + +++++ +k+d  +d+++    +  f e k+ ++++  p++  +   +s+   ++d++ s++ + +k e+++             k   +       ean ++ ++d+++ +                               
  MMETSP1061-20121228|15631_1  30 SSRTSAFAMGSKKEKKEKKEKKeQKEQKEKKEKKeKKEKKEKKAKRQKVDHDEDDELVsglPPAFYEEKSANEKHAEPPSPPKADADSNADAVADVDASDEPATGKGETEPtdatattkrkrkrK---RkrkaeAAEANGSDNDDDDDENNNgdnteqdggdgalvqdtifvegipfdsnhE 208
                  23322212211111111111110111111111110122222333333344433333333453344444444444444444444444444444555555555555555544455555554443221...022333333443333333333222333344444444444444444444444440 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.6      0.18        82     243     284 ..      80     121 ..      38     138 .. 0.59
   2 ?   -0.4   0.1       0.2        93     415     441 ..     305     331 ..     299     338 .. 0.81
   3 ?    8.5   0.0   0.00041      0.19      36      78 ..     351     393 ..     341     397 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.18
    TIGR01649 243 avdglssrtgalaplalgdraglaaglapsreslalasaala 284
                    +  +  +g  ++++++++a+  ++ +ps +++++ s a a
  MMETSP1061-20121228|15631_1  80 HDEDDELVSGLPPAFYEEKSANEKHAEPPSPPKADADSNADA 121
                  222222333888999999999999999999999888877766 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.2
    TIGR01649 415 satLHlsNiPlsvsEedlkelfaekgv 441
                  ++t+   N+P + +E ++  ++++++ 
  MMETSP1061-20121228|15631_1 305 CCTIYVNNLPYEATESSIASVVSKHTK 331
                  889999999999999999999888876 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.00041
    TIGR01649  36 kgkrqAlvEfedeesAkalVnfatsvpiqirGrtvfvqyStsk 78 
                  + k  A+++fe  + A+ + + at+ +++++Gr v ++y t +
  MMETSP1061-20121228|15631_1 351 QSKGFAYIDFESSKDAQRFMKAATKKNVTVGGRIVRLDYDTGR 393
                  56889**********************************9876 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5  18.4     0.021       9.4     759     992 ..      43     185 ..       9     212 .. 0.39

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.021
    TIGR00927 759 geeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieae..edgevkGdegeeqkveaeeeeeedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeee 992
                  ++++++e + e ++++e+++++e+++++e+ka                                                                                            +  +v++ded+  +        e k  +++  +  +  + ++d++ +   d +  ++   +k+et+  +++a ++ + k   k   +  +++G d +++++e+++ ++ e++
  MMETSP1061-20121228|15631_1  43 EKKEKKE-KKEQKEQKEKKEKKEKKEKKEKKA--------------------------------------------------------------------------------------------KRQKVDHDEDDELVSGLppAFYEEKSANEKHAEPPSPPKADADSNADAVADVDASDEPATGKGETEPTDATATTKRKRKRKRKRKAEAAEANGSDNDDDDDENNNGDNTEQD 185
                  1111111.111111111111111111111111............................................................................................1111222222111111100112222222222222222333333333333333333333444444444444444444444444444444444444444444444433322222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       552  (0.134569); expected 82.0 (0.02)
Passed bias filter:                      254  (0.061921); expected 82.0 (0.02)
Passed Vit filter:                        65  (0.0158459); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.60u 0.17s 00:00:00.77 Elapsed: 00:00:00.44
# Mc/sec: 1235.90
//
Query:       MMETSP1061-20121228|15630_1  [L=1034]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1034 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.11s 00:00:00.56 Elapsed: 00:00:00.52
# Mc/sec: 2624.55
//
Query:       MMETSP1061-20121228|15633_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 2001.83
//
Query:       MMETSP1061-20121228|15634_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.36
# Mc/sec: 1224.57
//
Query:       MMETSP1061-20121228|15635_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 2164.62
//
Query:       MMETSP1061-20121228|15637_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1633.37
//
Query:       MMETSP1061-20121228|15636_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.3e-215  713.8   0.2   2.9e-215  713.5   0.1    1.0  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    1.3e-93  311.9   1.4    1.7e-92  308.3   1.0    1.9  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    8.3e-76  253.4   0.1    4.8e-59  198.1   0.0    2.0  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    3.4e-48  161.6   0.1    3.9e-42  141.5   0.0    2.0  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    5.9e-14   49.2   0.4    1.9e-13   47.5   0.1    1.9  3  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    5.4e-13   46.3   0.2    8.9e-06   22.5   0.0    3.0  3  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    7.1e-12   42.5   0.3    4.4e-07   26.8   0.0    3.1  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    5.5e-10   36.4   0.0    0.00058   16.6   0.0    2.8  3  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    4.5e-09   33.4   0.7    0.00038   17.2   0.0    2.7  3  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    1.5e-08   32.2   0.0    3.5e-08   31.0   0.0    1.6  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    2.6e-08   30.7   0.1    4.6e-08   29.8   0.0    1.5  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
    2.8e-08   30.7   0.3    4.5e-08   30.0   0.2    1.2  1  TIGR02734 crtI_fam: phytoene desaturase
    3.3e-08   30.9   0.2    1.3e-06   25.7   0.0    2.6  3  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    8.1e-08   29.5   0.2     0.0011   15.9   0.0    2.2  2  TIGR02053 MerA: mercuric reductase
    2.3e-07   27.6   0.1      0.037   10.4   0.0    3.1  3  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    3.2e-07   27.3   0.1    6.8e-06   23.0   0.1    2.7  3  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    2.3e-06   24.3   0.1     0.0015   15.0   0.0    2.2  2  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    1.3e-05   22.3   0.0    9.2e-05   19.5   0.1    2.0  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    1.5e-05   22.1   0.0      6e-05   20.2   0.0    1.8  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
      2e-05   21.8   0.0      0.066   10.2   0.0    2.9  3  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    5.2e-05   19.0   0.2    0.00015   17.5   0.0    1.7  2  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    6.9e-05   19.6   0.0    0.00014   18.6   0.0    1.5  1  TIGR02028 ChlP: geranylgeranyl reductase
    7.6e-05   19.4   0.1    0.00012   18.8   0.1    1.2  1  TIGR02731 phytoene_desat: phytoene desaturase
    8.1e-05   19.6   0.2    0.00024   18.0   0.0    1.9  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      9e-05   19.3   0.0      9e-05   19.3   0.0    2.1  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    0.00011   18.8   0.8     0.0002   17.9   0.1    1.7  2  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    0.00011   19.2   0.1    0.00036   17.5   0.1    1.7  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
    0.00017   18.6   0.3     0.0022   15.0   0.1    2.3  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
    0.00031   17.4   0.0    0.00063   16.4   0.0    1.5  1  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00047   17.8   0.0    0.00047   17.8   0.0    2.8  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00056   16.7   0.1       0.52    6.9   0.0    2.6  3  TIGR01438 TGR: thioredoxin and glutathione reductase
    0.00059   16.3   2.6     0.0053   13.2   0.0    2.6  3  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
     0.0009   16.1   0.0     0.0014   15.5   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0011   15.5   0.3     0.0018   14.8   0.2    1.3  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0014   14.9   0.2       0.42    6.7   0.1    2.5  3  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
     0.0015   15.3   0.1     0.0022   14.8   0.1    1.2  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
     0.0015   15.1   0.1     0.0021   14.7   0.1    1.2  1  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
     0.0072   13.4   1.6       0.21    8.5   0.0    2.5  3  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
  ------ inclusion threshold ------
      0.012   12.0   0.0      0.019   11.3   0.0    1.3  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
      0.016   12.2   0.0       0.21    8.5   0.0    2.1  2  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
      0.018   11.7   0.0      0.036   10.7   0.0    1.4  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
      0.019   12.0   0.2        1.3    5.9   0.0    2.3  2  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  713.5   0.1    3e-217  2.9e-215       1     480 [.      65     554 ..      65     557 .. 0.94

  Alignments for each domain:
  == domain 1    score: 713.5 bits;  conditional E-value: 3e-217
    TIGR01317   1 kptGfleykrrkkeerdPltrlkdwkefs........epldeksaklqaarcmdcGiPfcknasGcPlnnliPefndlvfrgrwkealdrllktnnfPeftGrvcPaPcegacvlgisedpvtiksielaiidkgfeeGwvkPrppkkrtGkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGllryGiPnlkldkeiverridlleaeGvdfvtnveiGkdisaeelkedfdavvlatGatkprdlpieGrelegihyamefleaatkall.......dddlkdkekikakgkkvvviGGGdtGadcvgtslrhgaasvlqfeilPkpPeerakdnpwPewPkvlrvdyaheeakakygrdpreysiatkelvgddeGkvkavrtvevelkkdedGkyeleevpgseevleadlvllalGfvgpeqallddlgvdkdergnikaeldesetsidGvfaaGdarrGqslivwaineGreaaravdkylmg 480
                  k +Gf++y+r+ +  r Pl+rlkdw+e++        +  +  + k qaarcmdcG+Pfc++ +GcP+nnliPe+n+lvf++ w ea++rl+ tnnfPeftGrvcPaPceg+cv g+ ++pvtik+ie++i+d++f++G ++Pr+p++r+G +vavvGsGPaGla+adqln+ Gh+vtvfer+dr+GGll+yGiPn+kl+ke+v+rr++ll++eG++fvtn+++Gk++ ++el+ +fda+ l+ G+tkprdlp++Grel+g+h+amefl+a++k ll       +++  + + i+a+gk+v+viGGGdtG+dc+gts+rh ++sv++fe++P+pP era dnpwP+wP+v+ vdy+h+e++a  g+dpr+ys+ tkelvgd++G+vka+ t +ve++    G    + ++gse++++adlv+l++Gf +pe  + ++lg++ d+r+ni+a +++ +ts++Gvfa Gd+rrGqsl+vwaineGr +a a+++yl +
  MMETSP1061-20121228|15636_1  65 KLRGFVNYERNPEPYRPPLERLKDWEEINpvpdrdvdVAHTALERKVQAARCMDCGTPFCQTYTGCPVNNLIPEWNNLVFQDAWDEAIERLHSTNNFPEFTGRVCPAPCEGSCVAGLVDNPVTIKNIEYSIVDRAFRDGKITPRIPEERSGMTVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMYGIPNMKLEKETVDRRVNLLREEGIEFVTNADVGKNVDVNELNSQFDALCLTLGSTKPRDLPVSGRELKGVHFAMEFLTANQKKLLltkegklESQWEKDNWITAEGKDVIVIGGGDTGTDCIGTSMRHRCKSVTNFELMPQPPMERASDNPWPQWPRVFGVDYGHAEVRAATGKDPRVYSVMTKELVGDENGNVKALVTQDVEMT--ATGP---KAIEGSEREWPADLVVLSMGFLSPEAYVTEELGLNVDQRNNIQAVYGDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTADACNQYLQQ 554
                  579***********************985222211101222335689*******************************************************************************************************************************************************************************************************************************99886532111111444555569*******************************************************************************************************9..5665...89************************************************************************************965 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  308.3   1.0   1.7e-94   1.7e-92      33     466 ..     107     553 ..      73     554 .. 0.84

  Alignments for each domain:
  == domain 1    score: 308.3 bits;  conditional E-value: 1.7e-94
    TIGR01318  33 dqaqleadrclkcgepycew..kcpvhnaipdwlklvkegrieeaaelshqtntlpeicGrvcpqdrlceGactlkdesgavtiGnleryitdkalakgw.rpdlskvkktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGlltfGipsfkldkavlarrreileamGiefklnvevGrdvslddlledydavflGvGtyrskkadlpnedlkgvlkalpfliantrqlmglee......eeeeplidveGkrvvvlGGGdtamdcvrtairlgakkvtcvyrrdeanmpGsrre..vanareeGvefkfnvqpleievdedgk...vsgvklvrtklgepda.......kGrrraeivaGseavleadvviiafGfephamewlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeGrkaaegildyle 466
                   + +++a rc++cg p+c+    cpv n ip+w +lv ++  +ea+e  h tn++pe +Grvcp    ceG+c        vti n+e  i+d+a++ g   p +++ +++g  vav+G+GpaGlacad l++ G kv+vf+r ++iGGll +Gip++kl+k+ + rr ++l++ Gief  n++vG++v +++l +++da+ l +G+ +  +  + +++lkgv  a+ fl+an ++l   +e       e+ ++i  eGk v+v+GGGdt+ dc+ t++r+  k+vt      +  m  +  +   +  r  Gv++      +  ++++d +   v++ +lv ++ g+  a            ++ ++Gse + +ad v++++Gf + ++   +e g+++d++  i+a    +  ++ts + +faGGd++rG  lvv a++eGr +a+   +yl+
  MMETSP1061-20121228|15636_1 107 LERKVQAARCMDCGTPFCQTytGCPVNNLIPEWNNLVFQDAWDEAIERLHSTNNFPEFTGRVCPA--PCEGSCVAGLVDNPVTIKNIEYSIVDRAFRDGKiTPRIPE-ERSGMTVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMYGIPNMKLEKETVDRRVNLLREEGIEFVTNADVGKNVDVNELNSQFDALCLTLGSTKPRDLPVSGRELKGVHFAMEFLTANQKKLLLTKEgklesqWEKDNWITAEGKDVIVIGGGDTGTDCIGTSMRHRCKSVTNFELMPQPPMERASDNpwPQWPRVFGVDYGHAE--VRAATGKDPRvysVMTKELVGDENGNVKAlvtqdveMTATGPKAIEGSEREWPADLVVLSMGFLSPEAYVTEELGLNVDQRNNIQAV---YGDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTADACNQYLQ 553
                  46789*************85236*****************************************7..5******9999999****************9962688877.7899****************************************************************************************************************************998888778776677889*********************************876555555543333211233455565554332..22222222220002333344444444333111111112334889********************9999999*************998...6789********************************9998886 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.1   0.0   4.9e-61   4.8e-59      10     294 ..      98     384 ..      81     392 .. 0.91
   2 !   53.4   0.0     4e-17   3.9e-15     330     449 .]     437     552 ..     431     552 .. 0.87

  Alignments for each domain:
  == domain 1    score: 198.1 bits;  conditional E-value: 4.9e-61
    TIGR01316  10 kevelGytvelalkeaqrclqckdeekpcikGcpvhvdipefiakikeGdlkgalkiikqsdllpaicGrvcpqerqcegacvvgknrkdvgkpvaiGalerfvadyarehGieeeeekapstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGvlayGipefrlpkeivetevkklkklGvkfrldylvGktvtleellekydavfigtGaGlpkllnieGeelkgvysandflt....rvnlmka...yefpkkdtpvev.gkkvvviGgGntavdaartalrl 294
                  ++v++ +t    +++a rc+ c     +   Gcpv+  ipe+ + + + +  +a++ +++++ +p  +Grvcp    ceg+cv g     v +pv+i ++e  + d a ++G+++    ++ +++ vav+G+GpaGla+a++l ++Gh+vtvfe  ++ GG+l+yGip+++l+ke v+  v+ l+  G++f ++  vGk+v ++el +++da+ ++ G+ +p+ l + G elkgv+ a++flt    ++ l k        +kd  +++ gk v+viGgG t  d+  t++r 
  MMETSP1061-20121228|15636_1  98 RDVDVAHTALERKVQAARCMDCGTPFCQTYTGCPVNNLIPEWNNLVFQDAWDEAIERLHSTNNFPEFTGRVCPA--PCEGSCVAG----LVDNPVTIKNIEYSIVDRAFRDGKITPRIPEERSGMTVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMYGIPNMKLEKETVDRRVNLLREEGIEFVTNADVGKNVDVNELNSQFDALCLTLGSTKPRDLPVSGRELKGVHFAMEFLTanqkKLLLTKEgklESQWEKDNWITAeGKDVIVIGGGDTGTDCIGTSMRH 384
                  56778888888999*********999999********************************************6..7********....899******************************************************************************************************************************************************94322233555411133457787776549***************9999885 PP

  == domain 2    score: 53.4 bits;  conditional E-value: 4e-17
    TIGR01316 330 lqpveviGdeeGevkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGq.eankiiaedsslktskrGtiv.vdedletsieGvfaGGdvirGeatvilalgdGkraakaideyl 449
                  + + e++Gde+G+vka++ + +    e  + +++ + ++  e    ad v++++G   ++  ++e+ +l++ +r  i+ v  d++ts+eGvfaGGd  rG++ v+ a+ +G+ +a a ++yl
  MMETSP1061-20121228|15636_1 437 VMTKELVGDENGNVKALVTQDV----EMTATGPKAIEGS--EREWPADLVVLSMGFlSPEAYVTEELGLNVDQRNNIQaVYGDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTADACNQYL 552
                  56789*************9944....4456777777665..56678*********626778899999*******99964899**************************************97 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.5   0.0     4e-44   3.9e-42     438     687 ..     115     383 ..      97     392 .. 0.91
   2 !   18.1   0.0   7.9e-07   7.8e-05     754     835 ..     467     548 ..     436     568 .. 0.80

  Alignments for each domain:
  == domain 1    score: 141.5 bits;  conditional E-value: 4e-44
    TIGR03315 438 PltdcyvaPcvt..gcpinqdiPeyirlvgekkyaealeviveknalPaitGticdhqcqykctrldydeavkirelkkvalekaydeykeklekpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvkniiPefrisaeviqkdlelvkkkGvefklG..vsedltvdelkkegykyvvlaiGadkssklklkegner.vlksleflkefkedk................tklklGkrvvvvGgGntamdaaraalr 687
                    +dc    c+t  gcp+n  iPe+ +lv ++ ++ea+e + + n  P  tG +c  +c+  c     d++v+i+++    + +a+++ k + + p+ +s    vav+G+GPaGl+ +  l + G++vtvfe+ +++gG + + iP++++ +e++++ ++l +++G+ef +   v ++++v+el ++ ++ ++l+ G++k++ l +++ + + v  ++efl +++++                  ++  Gk v+v+GgG+t  d+  +++r
  MMETSP1061-20121228|15636_1 115 RCMDCGTPFCQTytGCPVNNLIPEWNNLVFQDAWDEAIERLHSTNNFPEFTGRVCPAPCEGSCVAGLVDNPVTIKNIEYSIVDRAFRDGKITPRIPEERSGM-TVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMYGIPNMKLEKETVDRRVNLLREEGIEFVTNadVGKNVDVNELNSQ-FDALCLTLGSTKPRDLPVSGRELKgVHFAMEFLTANQKKLlltkegklesqwekdnWITAEGKDVIVIGGGDTGTDCIGTSMR 383
                  45799999998777***********************************************************************************99998.9*****************************************************************76522678999****998.******************99886625569*****999988899999******988767789****************876655 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 7.9e-07
    TIGR03315 754 pvetgelveleadaviaavGeqv.dtellkklgieldekgkvvvneetketsvtnvfviGdakkGPativeaiadgrkaakai 835
                  ++e  e  e +ad v++++G  + +  + ++lg+++d+++ ++       tsv++vf  Gd ++G + +v ai +gr +a+a 
  MMETSP1061-20121228|15636_1 467 AIEGSE-REWPADLVVLSMGFLSpEAYVTEELGLNVDQRNNIQAVYGDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTADAC 548
                  555444.3789999999999866155667899*******9999998889****************************998875 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.5   0.1     2e-15   1.9e-13     372     500 ..     208     338 ..     165     371 .. 0.72
   2 ?   -1.0   0.0      0.94        92     378     406 ..     361     390 ..     344     396 .. 0.73
   3 ?   -3.7   0.0         6   5.9e+02     605     639 ..     507     542 ..     499     545 .. 0.72

  Alignments for each domain:
  == domain 1    score: 47.5 bits;  conditional E-value: 2e-15
    TIGR03997 372 tlkkarrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgreelaelvrdlaselkelgvevkl....GveadaelvlaekPDavvlatGs.rparpdlagadservvtvrevltgeae 500
                   +++ r   +v vvG+GPaGl+ a +  + Gh+vt++er++++GG +     +p  +  +e v+  ++ l+e g+e  +    G+++d ++++  + Da+ l  Gs +p+  +++g++ + v  ++e lt +++
  MMETSP1061-20121228|15636_1 208 RIPEERSGMTVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMY--GIPNMKLEKETVDRRVNLLREEGIEFVTnadvGKNVDVNELN-SQFDALCLTLGStKPRDLPVSGRELKGVHFAMEFLTANQK 338
                  3444444489***********************************8765..678888888999999999999999976422227778887775.578********94577889999999999888888887654 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.94
    TIGR03997 378 rrkkvlvvGgGPaGleaaataar.rGhrvt 406
                  + k v+v+GgG +G     t+ r r  +vt
  MMETSP1061-20121228|15636_1 361 EGKDVIVIGGGDTGTDCIGTSMRhRCKSVT 390
                  3499*********99887766532455555 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 6
    TIGR03997 605 edelylslkdkvlevyriGDclaPRr.veaaileGe 639
                   + +y +++ +v+ v+  GDc      v  ai eG+
  MMETSP1061-20121228|15636_1 507 IQAVYGDFRTSVEGVFAGGDCRRGQSlVVWAINEGR 542
                  5778999999999*******9765542455777775 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   6.6e-07   6.5e-05       4      38 ..     218     253 ..     210     310 .. 0.57
   2 ?   -0.1   0.0      0.64        63       3      14 ..     364     375 ..     357     397 .. 0.72
   3 !   22.5   0.0   9.1e-08   8.9e-06     210     330 ..     431     549 ..     424     563 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 6.6e-07
    TIGR01350   4 vvviGgGpgGYvaAiraaqlglkvalvek.eklGGt 38 
                  v v+G+Gp+G  +A +  q+g kv++ e+ +++GG 
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERaDRIGGL 253
                  455555555555555555555555555554445553 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.64
    TIGR01350   3 dvvviGgGpgGY 14 
                  dv+viGgG  G 
  MMETSP1061-20121228|15636_1 364 DVIVIGGGDTGT 375
                  778888887774 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 9.1e-08
    TIGR01350 210 daevskvlkkkl...kkkgvkiltnakvtevekeedevvveakkkevetleaekvLvavGrkpnleelgleklgveldergaik.vdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekia 330
                  d  v +v++k+l   ++ +vk l  + v+ + +  ++++    ++e ++  a+ v++++G+ +       e+lg+++d+r+ i+ v  ++rt+v+g++a GD+ ++  L   A +eg  +a++  
  MMETSP1061-20121228|15636_1 431 DPRVYSVMTKELvgdENGNVKALVTQDVEMTATGPKAIE----GSE-REWPADLVVLSMGFLSPEA-YVTEELGLNVDQRNNIQaVYGDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTADACN 549
                  555666666666222223366666666664444444443....343.67899********976555.799************97478******************************99888765 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00039     0.038       3      39 ..     218     254 ..     216     311 .. 0.91
   2 ?    1.4   0.0      0.25        25     141     153 ..     362     374 ..     360     390 .. 0.77
   3 !   26.8   0.0   4.5e-09   4.4e-07     219     300 .]     469     552 ..     432     552 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00039
    TIGR01292   3 viiiGaGpaGltaaiYaaranlktlliegkeaggqlt 39 
                  v+++G+GpaGl+ a    +++ k+ ++e+++  g l 
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLL 254
                  8899*******99999999999999999988877665 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.25
    TIGR01292 141 nkevavvGggdsA 153
                  +k+v+v+Gggd+ 
  MMETSP1061-20121228|15636_1 362 GKDVIVIGGGDTG 374
                  6788888888864 PP

  == domain 3    score: 26.8 bits;  conditional E-value: 4.5e-09
    TIGR01292 219 tkeeeelkvdgvFiaiGhepntellkel..leldeegyivvdee.mrTsveGvfaaGDvrdkslrQvvtaagdGaiAalsvekyl 300
                  +++e+e  +d v + +G+ + ++ ++e+  l++d+++ i+   +  rTsveGvfa GD+r+     vv a+++G   a + ++yl
  MMETSP1061-20121228|15636_1 469 EGSEREWPADLVVLSMGFLSPEAYVTEElgLNVDQRNNIQAVYGdFRTSVEGVFAGGDCRR-GQSLVVWAINEGRGTADACNQYL 552
                  56788999999******87777766666599********977766***************9.8889999*999998888877776 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.1e-06   0.00069     140     243 ..     206     310 ..     181     327 .. 0.78
   2 ?   -1.0   0.0       1.3   1.3e+02     149     176 ..     362     390 ..     347     396 .. 0.68
   3 !   16.6   0.0   5.9e-06   0.00058     228     288 ..     471     533 ..     439     539 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 7.1e-06
    TIGR03385 140 ikkyldkkkvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiaki.veeelekkeielrlneevksvegeekve.vltsgkvyqaDlvilavGv 243
                    ++ ++++  +v+v+G+G  gl  ++ l++ g +vt+ er+++i   ll + i ++ +e e  ++ ++l  +e ++ v + ++ + v  ++ + q+D++ l++G 
  MMETSP1061-20121228|15636_1 206 TPRIPEERSGMTVAVVGSGPAGLACADQLNQMGHKVTVFERADRI-GGLLMYGIPNMkLEKETVDRRVNLLREEGIEFVTNADVGKnVDVNELNSQFDALCLTLGS 310
                  4444456677899********************************.778878886541555555666*************99998845567778999999999984 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 1.3
    TIGR03385 149 vekvvviGgGyiglemve.alkergkevt 176
                   ++v+viGgG  g + +  ++++r k vt
  MMETSP1061-20121228|15636_1 362 GKDVIVIGGGDTGTDCIGtSMRHRCKSVT 390
                  56777777777777766414666666665 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 5.9e-06
    TIGR03385 228 sgkvyqaDlvilavG.vkPnselikssqlklgkkGaik.vnekfqtsveniyaiGDvaeskni 288
                  s+++  aDlv+l++G + P+  + ++++l+++++  i+ v   f+tsve ++a GD+   + +
  MMETSP1061-20121228|15636_1 471 SEREWPADLVVLSMGfLSPEAYVTEELGLNVDQRNNIQaVYGDFRTSVEGVFAGGDCRRGQSL 533
                  4556779********559*****************99736899*************9876655 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.1e-05     0.004       2      40 ..     218     256 ..     217     269 .. 0.88
   2 ?   -2.2   0.1       3.1     3e+02       1      14 [.     364     377 ..     364     386 .. 0.83
   3 !   17.2   0.0   3.9e-06   0.00038     227     315 ..     466     554 ..     436     555 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.1e-05
    TIGR04018   2 viiiGaGPiGlaaaieakkaglsyliiekgalvnsiyky 40 
                  v ++G+GP Gla+a ++++ g +++++e+   +  + +y
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMY 256
                  789*************************98877777776 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 3.1
    TIGR04018   1 dviiiGaGPiGlaa 14 
                  dvi+iG+G +G  +
  MMETSP1061-20121228|15636_1 364 DVIVIGGGDTGTDC 377
                  89999999999765 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 3.9e-06
    TIGR04018 227 etpegeveeiendfvlaltGy.rpdlelleklgveleedekipvydeetmEtnveglylaGvvaagletnkifiEngrlhakaiiesias 315
                  +  eg+++e ++d v++ +G+  p+  + e+lg++++++++i ++    + t+veg++  G +  g +   + i++gr  a+a  + +++
  MMETSP1061-20121228|15636_1 466 KAIEGSEREWPADLVVLSMGFlSPEAYVTEELGLNVDQRNNIQAVY-GDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTADACNQYLQQ 554
                  3346788899*****99999856999999*********98655554.569****************************999988777765 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   3.6e-10   3.5e-08       1      36 [.     218     253 ..     218     269 .. 0.96
   2 ?   -3.3   0.0       9.1   8.9e+02     232     298 ..     456     518 ..     445     552 .. 0.66

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 3.6e-10
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGR 36 
                  v+vvG G AGLa+A +L + G +vt++E++ ++GG 
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGL 253
                  89*********************************6 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 9.1
    TIGR03467 232 releasaggiralveaaeetlaadavvlAvpperaasllpeedlaaklaalesspIttvhlrldrev 298
                  + +e++a+g++a    +e + +ad vvl + + + ++ + e      l+  + + I +v+  +  +v
  MMETSP1061-20121228|15636_1 456 QDVEMTATGPKAIEG-SEREWPADLVVLSMGFLSPEAYVTE---ELGLNVDQRNNIQAVYGDFRTSV 518
                  456777778777444.5666789999988888777777776...44556666666777777666666 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   4.7e-10   4.6e-08     373     478 ..     216     319 ..     173     371 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 4.7e-10
    TIGR03996 373 gdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargdGlsrlaaladwledecrrlGvelrlgaavdae.eldaaraaGevvvlatGsvarplpapvd 478
                   +v vvG GpaGl  a  l   Gh+vt+ e++ r+GG++   +  + ++  +   d   +  r  G+e+ ++a+v+++ ++++ +++ + + l+ Gs+ +p   pv 
  MMETSP1061-20121228|15636_1 216 MTVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMYGI--PNMKLEKETVDRRVNLLREEGIEFVTNADVGKNvDVNELNSQFDALCLTLGST-KPRDLPVS 319
                  5688**********************************98877..55555566778889999999*******99986536777788888888888886.56666664 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.2   4.6e-10   4.5e-08       1      35 [.     218     252 ..     218     255 .. 0.97

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 4.6e-10
    TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdkpGG 35 
                  + V+G+G +GLA+A +L++ G++vtv+e+ d++GG
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERADRIGG 252
                  57********************************9 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   1.3e-08   1.3e-06      22     100 ..     216     295 ..     204     312 .. 0.79
   2 ?    2.2   0.0       0.2        19      14      37 ..     355     378 ..     348     392 .. 0.79
   3 ?   -2.8   0.0       6.4   6.3e+02     163     185 ..     425     447 ..     421     474 .. 0.70

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1.3e-08
    TIGR00292  22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGGGswgG..GmlfskivvekeakelLdelgiryedegdgyvvadsv 100
                  + v++vG+Gp+GL++a  l + g kv v+er   iGG    G   m  +k  v++   +lL+e gi++  + d     d  
  MMETSP1061-20121228|15636_1 216 MTVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMYGipNMKLEKETVDRRV-NLLREEGIEFVTNADVGKNVDVN 295
                  789*********************************988777335777777776654.68899999988877755444555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.2
    TIGR00292  14 edlldyaesDviivGaGpsGLtaa 37 
                  ++++     Dvi++G+G +G  + 
  MMETSP1061-20121228|15636_1 355 DNWITAEGKDVIVIGGGDTGTDCI 378
                  678888889**********98875 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 6.4
    TIGR00292 163 vdatGhdaeivavvakkiklead 185
                    atG d  + +v++k  +  ++
  MMETSP1061-20121228|15636_1 425 RAATGKDPRVYSVMTKELVGDEN 447
                  56899999999999988654433 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-05    0.0011     166     235 ..     214     293 ..     203     303 .. 0.76
   2 !   11.3   0.0   0.00026     0.026     254     326 ..     474     546 ..     425     561 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.1e-05
    TIGR02053 166 ipeslvviGggaiavElaqlfarlGsevtllqrserl.......l..keeepeisaaveellaeeGvevvksakv.kavs 235
                      ++v+G+g  ++  a  ++++G +vt+ +r++r+       +   + e+e      +ll+eeG+e+v++a v k+v+
  MMETSP1061-20121228|15636_1 214 SGMTVAVVGSGPAGLACADQLNQMGHKVTVFERADRIggllmygIpnMKLEKETVDRRVNLLREEGIEFVTNADVgKNVD 293
                  55679******************************96554333322224466666666789***********97624444 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00026
    TIGR02053 254 eveadellvAtGRkpnvdgLnLekvgvklderGeil.vdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAe 326
                  e  ad +++  G  +  +    e++g ++d+r +i+ v    rts  +++A GD+  g +l+  A +eG   A+
  MMETSP1061-20121228|15636_1 474 EWPADLVVLSMGFLSPEA-YVTEELGLNVDQRNNIQaVYGDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTAD 546
                  555555555555544333.4567889999999999658999************************999876654 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   0.00038     0.037     212     247 ..     215     252 ..     199     309 .. 0.76
   2 ?    3.4   0.0     0.048       4.7     351     367 ..     361     377 ..     341     398 .. 0.74
   3 !   10.0   0.0   0.00049     0.048     408     490 ..     436     531 ..     432     554 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00038
    TIGR03140 212 kydvlvvGgGPagaaaaiyaarkGlkvalv..aeriGG 247
                   + v vvG+GPag a a    + G kv++   a+riGG
  MMETSP1061-20121228|15636_1 215 GMTVAVVGSGPAGLACADQLNQMGHKVTVFerADRIGG 252
                  45566677777777777666666666666544666666 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.048
    TIGR03140 351 kgkkvaviGGGnsGiea 367
                  +gk+v viGGG++G + 
  MMETSP1061-20121228|15636_1 361 EGKDVIVIGGGDTGTDC 377
                  68889999999888764 PP

  == domain 3    score: 10.0 bits;  conditional E-value: 0.00049
    TIGR03140 408 saktkeivgdg.dkvtglkykdrsseeekkleldG.........vfvqiGlvpnteflkda..velnrrGeiv.idergrtsvkGifaaGdvttvp 490
                  s++tke+vgd+  +v++l  +d +  ++   +++G         v + +G+++  +++ +   +++++r +i  +    rtsv+G+fa Gd+   +
  MMETSP1061-20121228|15636_1 436 SVMTKELVGDEnGNVKALVTQDVEMTATGPKAIEGserewpadlVVLSMGFLSPEAYVTEElgLNVDQRNNIQaVYGDFRTSVEGVFAGGDCRRGQ 531
                  6789999987515799988888765544333333322223333289999*99999999887345666888885367889*************8654 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   6.9e-08   6.8e-06       1      34 [.     218     251 ..     218     257 .. 0.94
   2 ?   -0.4   0.0       0.9        88     112     161 ..     263     312 ..     261     334 .. 0.79
   3 ?   -0.0   0.0      0.67        65       1      28 [.     365     393 ..     365     398 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 6.9e-08
    TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkkig 34 
                  v+++G G+aGl +A ++ + g+kV+++E++++ig
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERADRIG 251
                  78*****************************998 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.9
    TIGR00275 112 LlkelkelgvevlteskvksikkeeekfevetekkeleakkvilatGgks 161
                  L+ke  + +v++l e+ ++ +++ + + +v++++ + +++++ l+ G+  
  MMETSP1061-20121228|15636_1 263 LEKETVDRRVNLLREEGIEFVTNADVGKNVDVNELNSQFDALCLTLGSTK 312
                  778888999999999****99999***********************953 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.67
    TIGR00275   1 viiiGgGaaGlmaAitaae.egakVlllE 28 
                  vi+iGgG  G  +  t  + + ++V+ +E
  MMETSP1061-20121228|15636_1 365 VIVIGGGDTGTDCIGTSMRhRCKSVTNFE 393
                  79********9998777765777777776 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.004       0.4     168     244 ..     217     294 ..     209     327 .. 0.76
   2 !   15.0   0.0   1.5e-05    0.0015     228     323 ..     453     548 ..     429     570 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.004
    TIGR01424 168 silvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddv.raelaeeleerGirillktvlksiekvddGlkvtl 244
                  +++vvG+G  +   a+ ++ +G kvt + r ++i   +   +  ++l++e  +r +++l ++ ++ +++ d G  v +
  MMETSP1061-20121228|15636_1 217 TVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMYGIpNMKLEKETVDRRVNLLREEGIEFVTNADVGKNVDV 294
                  578899999999999999999999999999998876666666357788888888888888888888888888865544 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 1.5e-05
    TIGR01424 228 tvlksiekvddGlkvtlskdeeivadvvllatGrvPnvkglgleaaGvelndagai.avdeysrtsvpsiyavGdvtdrinltPvaikeaaafaete 323
                   v++ +e ++ G k++  ++ e  ad v+l++G     +    e+ G+++++++ i av    rtsv++++a Gd      l   ai+e++  a++ 
  MMETSP1061-20121228|15636_1 453 LVTQDVEMTATGPKAIEGSEREWPADLVVLSMGFLS-PEAYVTEELGLNVDQRNNIqAVYGDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTADAC 548
                  4678999**************************764.35667899********9983477778***************************9988763 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   9.5e-07   9.2e-05       1      35 [.     217     251 ..     217     255 .. 0.94
   2 ?    0.1   0.0      0.71        70       1      42 [.     364     407 ..     364     408 .. 0.79

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 9.5e-07
    TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdekla 35 
                  +vav+G G Ag+a+a +L + G++vt++e++++++
  MMETSP1061-20121228|15636_1 217 TVAVVGSGPAGLACADQLNQMGHKVTVFERADRIG 251
                  69****************************98775 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.71
    TIGR03197   1 kvavIGaGiAga.alalsLarrGvqvtllekdekl.aqgASgnr 42 
                  +v+vIG+G  g+ ++ +s+  r  +vt +e  +++  + AS n+
  MMETSP1061-20121228|15636_1 364 DVIVIGGGDTGTdCIGTSMRHRCKSVTNFELMPQPpMERASDNP 407
                  69******999845668999999999999988776155688775 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   6.1e-07     6e-05       2      52 ..     218     268 ..     217     287 .. 0.88
   2 ?   -0.9   0.0       1.6   1.6e+02       1      12 [.     364     375 ..     364     398 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 6.1e-07
    TIGR01790   2 liviGgGlAglaiAlelakpglrvqlieaapklpfnntygvweddlsdlgl 52 
                  ++v+G+G+Agla A +l++ g +v + e a+++++   yg+ +  l++  +
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMYGIPNMKLEKETV 268
                  79**************************************98888887665 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 1.6
    TIGR01790   1 DliviGgGlAgl 12 
                  D+iviGgG  g+
  MMETSP1061-20121228|15636_1 364 DVIVIGGGDTGT 375
                  9*******9986 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0    0.0061       0.6     141     247 ..     211     316 ..     186     336 .. 0.63
   2 ?    0.4   0.0      0.63        62     144     170 ..     361     388 ..     345     401 .. 0.77
   3 !   10.2   0.0   0.00067     0.066     210     281 ..     454     528 ..     424     556 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0061
    TIGR03169 141 aseetkslavvGgGaagvElalalrkrlkkrg...lkaevs.laseakllqalsakvrklvkrllakrgievlekeevtevedealllaegetleadavllatgakapawL 247
                  ++++  ++avvG+G ag+  a  l++  +k     +++++  l   +    +l++++ ++  +ll+++gie ++++ v +      ++ ++ + ++da  l+ g+  p  L
  MMETSP1061-20121228|15636_1 211 EERSGMTVAVVGSGPAGLACADQLNQMGHKVTvfeRADRIGgLLMYGIPNMKLEKETVDRRVNLLREEGIEFVTNADVGKNV----DV-NELNSQFDALCLTLGSTKPRDL 316
                  5566679**********87776655544444300033333212233333333444444444567888888888888776544....33.2233466666666666666555 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.63
    TIGR03169 144 etkslavvGgGaagvElala.lrkrlkk 170
                  e k+++v+GgG  g   ++  +r+r k+
  MMETSP1061-20121228|15636_1 361 EGKDVIVIGGGDTGTDCIGTsMRHRCKS 388
                  45799*********99887647777765 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00067
    TIGR03169 210 ekeevtevede.alllaegetleadavllatgakap..awLaesglsldedGfla.vkktLqslshpevFaaGDca 281
                   ++ v+  +++ + + +++++ +ad v+l++g  +p  ++ +e gl++d++  ++ v   +++ s + vFa+GDc 
  MMETSP1061-20121228|15636_1 454 VTQDVEMTATGpKAIEGSEREWPADLVVLSMGFLSPeaYVTEELGLNVDQRNNIQaVYGDFRT-SVEGVFAGGDCR 528
                  3333333333335555688999**********766511456889*******999736677777.99*********5 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06   0.00015     171     209 ..     218     256 ..     211     271 .. 0.92
   2 ?   -1.7   0.0         1        97     372     458 ..     436     527 ..     421     562 .. 0.65

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.5e-06
    TIGR01372 171 vLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGslls 209
                  v vvG+GpaGLa A +  + G +v++ +   ++GG l +
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMY 256
                  78*********************************9865 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1
    TIGR01372 372 evikgsavaategkk.rvesvkvarvdlst.aesgaeeeleaDallvsgGw.sPvvhLasqakgklawdeeraaFlpde..avqelllaGAv 458
                  +v++++ v + +g+  ++ +  v+ + ++  a  g+e+e  aD++++s G+ sP   ++ + +  +  +++++a   d   +v+++ + G +
  MMETSP1061-20121228|15636_1 436 SVMTKELVGDENGNVkALVTQDVEMTATGPkAIEGSEREWPADLVVLSMGFlSPEAYVTEELGLNVDQRNNIQAVYGDFrtSVEGVFAGGDC 527
                  56777777777877436666667666665556778899999999999999867877777777777777777777665532245555555544 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.4e-06   0.00014       2      66 ..     217     276 ..     216     296 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.4e-06
    TIGR02028   2 rvavvgggpagasaaetlakagiqtfllerkldnakpcggaiplcmvdefdlprdiidrrvtkmk 66 
                   vavvg gpag ++a+ l + g +  ++er        gg + +  + +++l ++ +drrv+ ++
  MMETSP1061-20121228|15636_1 217 TVAVVGSGPAGLACADQLNQMGHKVTVFERA----DRIGGLL-MYGIPNMKLEKETVDRRVNLLR 276
                  69***************************95....5677765.5567899**********98766 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   1.2e-06   0.00012       2      38 ..     218     254 ..     217     256 .. 0.95

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.2e-06
    TIGR02731   2 vaiagaglaglsaakyladaghtpivleardvlggkv 38 
                  va+ g+g agl++a  l + gh+  v+e++d +gg++
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLL 254
                  89*********************************75 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.5e-06   0.00024       2      63 ..     217     273 ..     216     293 .. 0.83
   2 ?   -2.6   0.0       4.5   4.4e+02       2      14 ..     364     376 ..     363     388 .. 0.83
   3 ?   -3.7   0.0       9.6   9.4e+02     285     305 ..     535     555 ..     533     564 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.5e-06
    TIGR02023   2 dvlviGggpsGaaaaetLakagievillerelarikPCGGaiPlalieefdlPedlidrrvr 63 
                   v+v+G+gp+G a a++L ++g++v ++er+ +ri   GG + +  i + +l ++ +drrv+
  MMETSP1061-20121228|15636_1 217 TVAVVGSGPAGLACADQLNQMGHKVTVFERA-DRI---GGLL-MYGIPNMKLEKETVDRRVN 273
                  69****************************9.776...5544.4456677777777777775 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 4.5
    TIGR02023   2 dvlviGggpsGaa 14 
                  dv+viGgg +G+ 
  MMETSP1061-20121228|15636_1 364 DVIVIGGGDTGTD 376
                  8*******99975 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 9.6
    TIGR02023 285 yyamksGklaaeaivealksg 305
                   +a++ G+ +a+a+ ++l++ 
  MMETSP1061-20121228|15636_1 535 VWAINEGRGTADACNQYLQQK 555
                  69999**********999965 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       2.5   2.4e+02     158     178 ..      36      56 ..      20      59 .. 0.88
   2 !   19.3   0.0   9.2e-07     9e-05       2      69 ..     218     295 ..     217     309 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.5
    TIGR01988 158 vgADGanSkvrqaagikttew 178
                  ++ADG++  v +  +ik++++
  MMETSP1061-20121228|15636_1  36 IAADGRHAHVENFDEIKVQRR 56 
                  89********99999999876 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 9.2e-07
    TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaaek...........akspafdnRvsAlsaasiellekigvwdklekk 69 
                  +++vG+G++Gla+A +L++++  kv+++e+++               +++++d Rv  l ++ ie+  + +v ++++ +
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMG-HKVTVFERADRIGgllmygipnmkLEKETVDRRVNLLREEGIEFVTNADVGKNVDVN 295
                  89****************988.9******99877799999999999788899*******************99998765 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   2.1e-06    0.0002       4      44 ..     217     255 ..     214     290 .. 0.86
   2 ?   -1.7   0.0       1.8   1.7e+02       3      24 ..     363     385 ..     361     394 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.1e-06
    TIGR00562   4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy 44 
                   v+vvG+G +GL+ a  l++   +  ++++E  dR+GG ++
  MMETSP1061-20121228|15636_1 217 TVAVVGSGPAGLACADQLNQM--GHKVTVFERADRIGGLLM 255
                  69*****************99..99*************765 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.8
    TIGR00562   3 kkvvvvGgGisGL.ciayaleke 24 
                  k+v+v+GgG +G  ci   ++ +
  MMETSP1061-20121228|15636_1 363 KDVIVIGGGDTGTdCIGTSMRHR 385
                  79*******99964666666655 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   3.7e-06   0.00036       2      35 ..     217     250 ..     216     253 .. 0.92
   2 ?   -1.6   0.0       2.4   2.4e+02       2      32 ..     364     395 ..     363     399 .. 0.74

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.7e-06
    TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvierssra 35 
                   v+vvG+G  Gla A +  + G+kVtv+er++r 
  MMETSP1061-20121228|15636_1 217 TVAVVGSGPAGLACADQLNQMGHKVTVFERADRI 250
                  699***************************9886 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 2.4
    TIGR03364   2 dvvvvGaGivGla.hAlaaarrGlkVtviers 32 
                  dv+v+G+G  G+  +    ++r ++Vt +e  
  MMETSP1061-20121228|15636_1 364 DVIVIGGGDTGTDcIGTSMRHRCKSVTNFELM 395
                  9*******999961456666788888877755 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   2.3e-05    0.0022       1      30 [.     218     247 ..     218     252 .. 0.92
   2 ?    0.9   0.0      0.42        41     175     210 ..     456     491 ..     433     504 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.3e-05
    TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekd 30 
                  v+v+G G  Gl+ A +L + ghkvt++e++
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERA 247
                  79**************************98 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.42
    TIGR02352 175 qeieargekvtavktssekvqadqvvlaaGawakel 210
                  q++e       a+++s+ ++ ad vvl+ G  + e 
  MMETSP1061-20121228|15636_1 456 QDVEMTATGPKAIEGSEREWPADLVVLSMGFLSPEA 491
                  556666666689999***************998875 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   6.5e-06   0.00063       2      38 ..     218     253 ..     217     274 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 6.5e-06
    TIGR01813   2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGGN 38 
                  v vvGsG AGl+ a ++++ g ++v v e+a+ iGG 
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMG-HKVTVFERADRIGGL 253
                  78*******************.*************95 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.8e-06   0.00047       3      36 ..     218     251 ..     216     280 .. 0.93
   2 ?   -1.7   1.0       4.1     4e+02       2      12 ..     364     374 ..     363     380 .. 0.89
   3 ?   -1.3   0.0         3     3e+02     115     167 ..     455     509 ..     445     521 .. 0.62

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.8e-06
    TIGR02032   3 vvvvGaGpaGssaAlrlakkGlrVlllekkelpr 36 
                  v vvG GpaG + A +l + G++V ++e+++ ++
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERADRIG 251
                  67***************************98765 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 4.1
    TIGR02032   2 DvvvvGaGpaG 12 
                  Dv+v+G+G  G
  MMETSP1061-20121228|15636_1 364 DVIVIGGGDTG 374
                  ********988 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 3
    TIGR02032 115 lsveiedekvkvevredekkevtakivigAdGakskvak...klglkkekrelava 167
                  ++  ++  ++  ++ e++++e  a++v+ + G  s+ a    +lgl+ ++r+   a
  MMETSP1061-20121228|15636_1 455 TQDVEMT-ATGPKAIEGSEREWPADLVVLSMGFLSPEAYvteELGLNVDQRNNIQA 509
                  4444443.3333344457999***********999855421155566666655554 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0053      0.52       6      33 ..     219     246 ..     214     295 .. 0.85
   2 ?   -2.4   0.0       3.5   3.4e+02       4      21 ..     364     381 ..     363     395 .. 0.79
   3 !    6.9   0.0    0.0054      0.53     287     355 ..     494     560 ..     455     571 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0053
    TIGR01438   6 iviGgGsGGlaaakeaaklgakvllldf 33 
                   v+G+G+ Gla+a +  ++g kv +++ 
  MMETSP1061-20121228|15636_1 219 AVVGSGPAGLACADQLNQMGHKVTVFER 246
                  5788888888888888888888888764 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 3.5
    TIGR01438   4 dliviGgGsGGlaaakea 21 
                  d+iviGgG  G  +   +
  MMETSP1061-20121228|15636_1 364 DVIVIGGGDTGTDCIGTS 381
                  89*******999886655 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.0054
    TIGR01438 287 lenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdskeivdyenv 355
                   e++g++v+++++   +    rt+v++++a Gd  ++ + l   ai+ G+  ad   +   ++ ++++v
  MMETSP1061-20121228|15636_1 494 TEELGLNVDQRNNIQAVYGDFRTSVEGVFAGGDCRRG-QSLVVWAINEGRGTADACNQY-LQQKRFDDV 560
                  5899********999999999************9876.579999999999888765433.333455555 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.084       8.2     143     177 ..     215     249 ..     211     298 .. 0.72
   2 ?   -2.2   0.1       2.5   2.4e+02     143     152 ..     362     371 ..     360     382 .. 0.67
   3 !   13.2   0.0   5.4e-05    0.0053     255     312 ..     499     556 ..     423     568 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.084
    TIGR03143 143 GldvlviGgGfaaaeeavfltkyakkvtvivrepd 177
                  G+ v v+G+G a    a  l + ++kvtv  r + 
  MMETSP1061-20121228|15636_1 215 GMTVAVVGSGPAGLACADQLNQMGHKVTVFERADR 249
                  66667777666666666667777777776666554 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.5
    TIGR03143 143 GldvlviGgG 152
                  G+dv+viGgG
  MMETSP1061-20121228|15636_1 362 GKDVIVIGGG 371
                  5666666665 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 5.4e-05
    TIGR03143 255 velderGyvvt.nedletnveGvyaaGdlrvkelrqvvtavadGaiaateleryvkelk 312
                  +++d+r  + +   d++t+veGv+a Gd r  +   vv a+ +G  +a   ++y+++++
  MMETSP1061-20121228|15636_1 499 LNVDQRNNIQAvYGDFRTSVEGVFAGGDCRRGQ-SLVVWAINEGRGTADACNQYLQQKR 556
                  577888887652579**************9765.569******************9986 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-05    0.0014       5      38 ..     219     252 ..     216     260 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.4e-05
    TIGR00031   5 iivGaGlsGivlaeilaklnkrvlvvekrnhiGG 38 
                   +vG+G +G  +a+ l++++++v v e+ ++iGG
  MMETSP1061-20121228|15636_1 219 AVVGSGPAGLACADQLNQMGHKVTVFERADRIGG 252
                  69*******************************9 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   1.9e-05    0.0018       3      38 ..     217     252 ..     215     255 .. 0.95

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.9e-05
    TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaaaqvGG 38 
                  +v v+G+G aGl++a  l + G +vt++e a  +GG
  MMETSP1061-20121228|15636_1 217 TVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGG 252
                  699*******************************99 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.1    0.0043      0.42     142     178 ..     217     253 ..     198     316 .. 0.73
   2 ?   -1.5   0.0       1.4   1.3e+02      92     123 ..     296     328 ..     264     371 .. 0.80
   3 ?    5.4   0.0     0.011         1     227     282 ..     475     532 ..     449     566 .. 0.81

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0043
    TIGR02374 142 kaaviGgGLLGLeaaraLknlGldvsvielapllmak 178
                    av+G+G  GL  a  L+++G +v v e a ++   
  MMETSP1061-20121228|15636_1 217 TVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGL 253
                  459*************************998876444 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.4
    TIGR02374  92 grtlsyDkLilatGsy.pfilPipGaDkkgvfv 123
                  +   ++D L l  Gs+ p  lP+ G + kgv+ 
  MMETSP1061-20121228|15636_1 296 ELNSQFDALCLTLGSTkPRDLPVSGRELKGVHF 328
                  445789********964899*********9984 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.011
    TIGR02374 227 leadlvvlaaG.irPrdeLaaeaGlkvndrrGi.ivndsmqtsdPdiyavGecaehng 282
                    adlvvl+ G + P+  ++ e Gl+v++r  i  v    +ts   ++a G+c   ++
  MMETSP1061-20121228|15636_1 475 WPADLVVLSMGfLSPEAYVTEELGLNVDQRNNIqAVYGDFRTSVEGVFAGGDCRRGQS 532
                  459********558***************999954667789***********976655 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.1   2.2e-05    0.0022       2      36 ..     218     252 ..     217     257 .. 0.94

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.2e-05
    TIGR02732   2 vaivgaglaglatavelvdaghevelyesrsflgg 36 
                  va+vg+g agla+a +l + gh+v ++e    +gg
  MMETSP1061-20121228|15636_1 218 VAVVGSGPAGLACADQLNQMGHKVTVFERADRIGG 252
                  9***************************9999998 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.1   2.2e-05    0.0021       1      46 [.     216     261 ..     216     295 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.2e-05
    TIGR03026   1 mkiavvGlGYvGlplaallaekgheVvgvDidkekveklnkgkspi 46 
                  m++avvG G  Gl++a  l+++gh+V++++  ++    l  g  ++
  MMETSP1061-20121228|15636_1 216 MTVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMYGIPNM 261
                  89***************************98777666666665444 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.079       7.7       6      38 ..     219     252 ..     214     310 .. 0.84
   2 ?   -2.3   0.1       4.4   4.2e+02       4      18 ..     364     378 ..     362     389 .. 0.76
   3 !    8.5   0.0    0.0022      0.21     231     333 ..     456     556 ..     429     567 .. 0.75

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.079
    TIGR01421   6 lviGGGsGGiasarraaeyGakallvee.kklGG 38 
                   v+G G  G+a a +  ++G k+ + e  +++GG
  MMETSP1061-20121228|15636_1 219 AVVGSGPAGLACADQLNQMGHKVTVFERaDRIGG 252
                  5899999999999999999999999996256777 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 4.4
    TIGR01421   4 dylviGGGsGGiasa 18 
                  d++viGGG  G   +
  MMETSP1061-20121228|15636_1 364 DVIVIGGGDTGTDCI 378
                  99******9997654 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0022
    TIGR01421 231 vkvektvegklvitledgkeiedvdeliwaiGrkpntkdlglekvgvkldekgyikvd.eyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegkedak 333
                  ++ve t+ g     +e ++    +d ++ ++G   + +    e++g+++d+++ i++      t+veg++a Gd    + l   ai+ Gr  ++   ++ ++++
  MMETSP1061-20121228|15636_1 456 QDVEMTATGPK--AIEGSEREWPADLVVLSMGFL-SPEAYVTEELGLNVDQRNNIQAVyGDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTADACNQYLQQKR 556
                  45666665533..345555567789999999988.77788899************9741334699***********99************98876655555444 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0002     0.019     254     347 ..     455     547 ..     417     569 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0002
    TIGR01423 254 pakveknadgskhvvfesgkeldvdvvmlaigrlprsqtlqldkvgveladkgaik.vdeysktnvdniyaigdvtdrvmltpvainegaavvdt 347
                     ve+ a g k +   s +e   d+v+l++g l    ++  ++ g+++ ++  i+ v    +t v+ ++a gd      l   aineg    d+
  MMETSP1061-20121228|15636_1 455 TQDVEMTATGPKAI-EGSEREWPADLVVLSMGFLSPEAYV-TEELGLNVDQRNNIQaVYGDFRTSVEGVFAGGDCRRGQSLVVWAINEGRGTADA 547
                  45677777777765.467889999**********988887.5889*******99984556679**************************988886 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0    0.0021      0.21     147     194 ..     217     264 ..     210     274 .. 0.82
   2 ?    1.0   0.0      0.41        40     139     159 ..     358     376 ..     350     392 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0021
    TIGR03911 147 dvlviGlGkvGtaaavalvkkGakvyvydkekelleklvkdlpevgie 194
                   v v+G G+ G a a +l + G kv v++    +   l+  +p++++e
  MMETSP1061-20121228|15636_1 217 TVAVVGSGPAGLACADQLNQMGHKVTVFERADRIGGLLMYGIPNMKLE 264
                  589************************998877766666666666655 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.41
    TIGR03911 139 lkaglkekdvlviGlGkvGta 159
                  ++a+   kdv+viG G  Gt 
  MMETSP1061-20121228|15636_1 358 ITAE--GKDVIVIGGGDTGTD 376
                  6666..8**********9986 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00037     0.036       4      36 ..     217     249 ..     215     311 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00037
    TIGR02360   4 qvaiigaGpsGlllgqllhkaGidavilerksr 36 
                   va++g+Gp+Gl  ++ l++ G ++ ++er +r
  MMETSP1061-20121228|15636_1 217 TVAVVGSGPAGLACADQLNQMGHKVTVFERADR 249
                  69****************************876 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.014       1.3     154     213 ..     213     270 ..     205     297 .. 0.78
   2 ?    3.6   0.0     0.071         7      58      88 ..     524     555 ..     506     563 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.014
    TIGR03366 154 legrrvlvlGaGmLGLtaaaaaeerGasrviavDpsaeRrelaaafGaealaeeeelaev 213
                  ++g +v v+G G  GL+ a +++++G  +v++++  a+R    + +G+ ++  e+e+ ++
  MMETSP1061-20121228|15636_1 213 RSGMTVAVVGSGPAGLACADQLNQMGH-KVTVFER-ADRIGGLLMYGIPNMKLEKETVDR 270
                  6899**********************9.7999875.566666667776666655555555 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.071
    TIGR03366  58 geklavGqR.vvwsvavsCgrCerCrrgltqk 88 
                  g   + Gq  vvw++  + g+ + C++ l+qk
  MMETSP1061-20121228|15636_1 524 GGDCRRGQSlVVWAINEGRGTADACNQYLQQK 555
                  556677775489*****************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        74  (0.01804); expected 4.1 (0.001)
Passed Fwd filter:                        42  (0.0102389); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              42  [number of targets reported over threshold]
# CPU time: 0.68u 0.14s 00:00:00.82 Elapsed: 00:00:00.56
# Mc/sec: 1340.73
//
Query:       MMETSP1061-20121228|15638_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       305  (0.074354); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.15s 00:00:00.74 Elapsed: 00:00:00.53
# Mc/sec: 2208.95
//
Query:       MMETSP1061-20121228|15640_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 2667.78
//
Query:       MMETSP1061-20121228|15639_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.40
# Mc/sec: 2323.01
//
Query:       MMETSP1061-20121228|15643_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   12.8   4.5        1.1    7.5   0.0    3.1  3  TIGR02976 phageshock_pspB: phage shock protein B
      0.027   11.5   1.4      0.039   10.9   0.1    1.7  2  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein
       0.96    4.9  24.0        2.1    3.7  16.6    1.4  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        6.2    2.1  23.2         13    1.0  16.1    1.4  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.3    0.0066       6.8      37      63 ..      49      75 ..      39      85 .. 0.84
   2 ?    7.5   0.0     0.001       1.1      20      61 ..     169     210 ..     167     213 .. 0.90
   3 ?   -0.2   0.1      0.26   2.7e+02      46      64 ..     233     252 ..     225     258 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0066
    TIGR02976 37 stddlalLeelsekakrleeRidtLEr 63
                  ++  + +++l+++a++le+ i+ L r
  MMETSP1061-20121228|15643_1 49 KENGNETMAQLEHQAEKLENIIESLDR 75
                 566677899999******999999865 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.001
    TIGR02976  20 lwlllhyrskrktaaslstddlalLeelsekakrleeRidtL 61 
                  +  +lh  + ++ +  l++ + + L+e++ek +r +e  d L
  MMETSP1061-20121228|15643_1 169 TAHILHFGKSKGSGPHLTEAERKDLTEIAEKDRRVDEKLDEL 210
                  566899998889999**********************99987 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.26
    TIGR02976  46 elseka.krleeRidtLEri 64 
                  +l++ a +++e+  d+LE++
  MMETSP1061-20121228|15643_1 233 KLYSVAkNKMENNEDQLEEL 252
                  55555525788888888876 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   3.8e-05     0.039     199     248 ..      33      82 ..      20      90 .. 0.82
   2 ?   -1.1   0.1      0.18   1.9e+02     193     206 ..     227     240 ..     184     260 .. 0.41

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.8e-05
    TIGR00996 199 rvldvladasdqldrlldnlatliaqladrsdaLddalaalsalsaqvrd 248
                    l++l++a++ ++++ +n ++++aql+++ ++L ++++ l++  ++++d
  MMETSP1061-20121228|15643_1  33 EMLESLDRAGQCVNEIKENGNETMAQLEHQAEKLENIIESLDRQEEVMND 82 
                  46788999999999999999999999999999999999999887666665 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.18
    TIGR00996 193 lidnlnrvldvlad 206
                   +++ n++ +v  +
  MMETSP1061-20121228|15643_1 227 QVEKQNKLYSVAKN 240
                  22222222222222 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7  16.6     0.002       2.1     273     494 ..      28     257 ..      16     260 .. 0.62

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.002
    TIGR02168 273 rlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsev....aeleeqlaslnael.....erleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarle 494
                  ++ + e+ e+l+++ + ++e+k++ ++  +++e++ e+le+  ++l++ ee ++++e+++++l+  + +   + +  k + ++ +++ ++++++  +++s++++ +++ +++ ++      e ++++a+l+ el     er  a++ +  +++    + +e+++k+l+e+ ++ ++++e+l+el +e   +  +   + +++e++++ +  a++++++ e++l++l++r +
  MMETSP1061-20121228|15643_1  28 KDLQDEMLESLDRAGQCVNEIKENGNETMAQLEHQAEKLENIIESLDRQEEVMNDAEKEQDRLAFWTCNFFYKCKANKGKKKK-RNKNKNKNKDSSNSNSNSNNNNNNNTTAPRRRgplpGEKQNRIAALRDELlatkgERPTAHILHFGKSKGSGPHLTEAERKDLTEIAEKDRRVDEKLDELGQETRCMLDQAMFFGQQVEKQNKLYSVAKNKMENNEDQLEELNQRTQ 257
                  45556666777777777777777777777777777777777777777777777777777777666555555444443333222.222222233333333333333222222222221111233444444444431111134556677777777777788888889999999999999999999999999999999999999999999999999999999999999999876 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0  16.1     0.013        13     702     928 ..      28     257 ..      18     262 .. 0.49

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.013
    TIGR02169 702 ekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeiee...leeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkakle 928
                  +   de+ ++l++a + ++ei+++ ++  ++ e+++e+le++ e+l+  ee ++++++e+++l+    +   + ++ +  k++ ++ +++ +++   +++++ ++ +++ +  +      e++     l+ ell  + +   ++i ++ + k +  +  e+ +++l e++e+ ++   ++ eL +e   +  +     +++++++k +  ++ ++e+++++l+el+++ +
  MMETSP1061-20121228|15643_1  28 KDLQDEMLESLDRAGQCVNEIKENGNETMAQLEHQAEKLENIIESLDRQEEVMNDAEKEQDRLAFWTCNffyKCKANKGKKKKRNKNKNKNKDSSNSNSNSNNNNNNNTTAPRRRGPLPGEKQNRIAALRDELLATKGERPTAHILHFGKSKGSGPHLTEAERKDLTEIAEKDRRVDEKLDELGQETRCMLDQAMFFGQQVEKQNKLYSVAKNKMENNEDQLEELNQRTQ 257
                  44555555666666666666666666666666666666666666666666666666666666554332211022222222222233333333333333222222222222222222222233333333556666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       478  (0.116529); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.17s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 1239.75
//
Query:       MMETSP1061-20121228|15642_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-06   21.3  57.0    4.1e-05   19.3  15.4    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      1e-05   21.3  34.3      1e-05   21.3  23.8    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
          1    4.8  44.0      0.032    9.8  20.9    2.1  2  TIGR02680 TIGR02680: TIGR02680 family protein
        4.8    3.1   9.8        8.1    2.3   6.6    1.5  1  TIGR00833 actII: transport protein


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3  15.4     4e-08   4.1e-05     211     473 ..      65     329 ..      61     360 .. 0.75
   2 !    5.9  21.8   0.00044      0.45     269     513 ..     322     566 ..     311     580 .. 0.37

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 4e-08
    TIGR02169 211 aerYkeLkkekreleltlllkelealekqkekiekelaeleeele.kleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeae...idklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlke...dlekaekelr 473
                  a++  +L+k  r+le++ +    +++ ++ ++i++++ ++ +  + +  e + el + ++    + +e   +i+++++e q+++k  +e+  + +e     i+e++e+ +d ++ +    +e     +++  + e e+++ + +  +++     +el++ l e ++el++ +  ++e+re  ++++ kl +l e l++    l + ++el   eeel+++ +el ++++++ eleee+ +la+e+  a  k+ ql++    + +++k+l+
  MMETSP1061-20121228|15642_1  65 ALKSSNLRKLIRNLEYYCHEDLQKDAAESFQEISSNVGKISRTGDsDAIETLVELVAAVAVTCPQKSEFVGRIMSMSSESQIQMKGIIESSLGRLEDYV--IDEEHEDFNDEDDPEMIFSEEtgdAAATETGKGESEESLFHANHLKRSSDGDAEELEQALIEAKRELAAQKSVMNEVREDADKAQSKLRALVEDLQDR---LAKRQDELITSEEELRDATNELDDLKSRVGELEEERAQLADELDLASAKATQLHKaeaTVMAYKKKLE 329
                  677789999******************************9998652455677888888888888999999***************99998888777665..44555555555555544444400045556666788888888888888888888899999989999999999999999999998888888887666555...58999*************************************98777666666550004445555544 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.00044
    TIGR02169 269 eeiekkleel...nkkieklgeeeqlavkekleelkaeiek...leraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleel..raeleevdkeaa.elreelkelkekle..klkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelae...eikkaeqkleq.lkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskav 513
                   + +kkle +   n+++ +  e++++   +++ +l++e++k   l+r+++  +++l  +e+++      +++  +e+ +l+  ++e +k ++  ++elkel+++++    + ++e  d  a+  + ++ k ++ ++e  klk+e+++ k        ++ ++ e +   +a++ +++ +i++l+e l+++ +   +i  ++ kle  +k  l+k ++++      l++ + +l+e++ +++ le +  + ++++   k+ 
  MMETSP1061-20121228|15642_1 322 MAYKKKLEGVgvmNQQMTD-LEDQAAGYLRQIMDLEGEVKKtatLQRQVDSLQKKLGILEKEKVVSSDSLKSSTAEVSKLKDTLAEAEKAKKLYMDELKELRAKQAVAneVVDVEGFDSPAHvSTDQREKTMRLEIEntKLKSEIENFK--------KAVKTGEPVGPSQAKVDEMQGQINALKELLQKKIAenkKIVSDKDKLEAyTKRTLAKFQDKYLV---ALQECKAKLKEKQDKIEVLESRSATEKSAQ---KRE 566
                  4444444433111233333.233334444455555555443111445555555555555555555555555555555566666666655555556666555544433200233333333222012222222222222112333333333........2333333333333444444433333333333332200022222333322122222333333322...233444444444444444444442222222...222 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3  23.8     1e-08     1e-05     700     930 ..     200     429 ..     181     436 .. 0.75
   2 !    9.7  20.6   3.3e-05     0.034     233     468 ..     337     566 ..     325     578 .. 0.46

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1e-08
    TIGR02168 700 kelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeiee...leeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqle 930
                  + l  +++  ++ + ++e+l+++l e++r+l+++k+ ++++++ + +++   ++l++ +e+l+++ ++ ++el  +eeel  a +e+++l++++ +l+ee ++l ++l+ ++a++t+l+++ a+   ++++  + +  +++++++le+q++    +i +le e+++   l+++ + l+++l  l+kek  ++  l++  +e ++l+++l e+ek++k   +el+elr+k+a ++
  MMETSP1061-20121228|15642_1 200 ESLFHANHLKRSSDGDAEELEQALIEAKRELAAQKSVMNEVREDADKAQ---SKLRALVEDLQDRLAKRQDELITSEEELRDATNELDDLKSRVGELEEERAQLADELDLASAKATQLHKAEAT-VMAYKKKLEGVGVMNQQMTDLEDQAAGYLRQIMDLEGEVKKtatLQRQVDSLQKKLGILEKEKVVSSDSLKSSTAEVSKLKDTLAEAEKAKKLYMDELKELRAKQAVAN 429
                  4444555555555666778888888888888888888888877777776...445566777888888888888888888888888888899999998888888888888888888877776664.4577777788888888888888888888888888888876611145566678888888888888888888888888888888888888888888888888888876555 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 3.3e-05
    TIGR02168 233 rleelkeeleeleee...lkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaele..elesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeel 468
                  ++++l+++ + + ++   l+ + ++ ++l+++++ l+++l  l++ek   +++l++ ++e+ +lk ++++ e+ ++ + ++l++l+++++ ++e ++ +  +    +   ++++e++ +l+ e ++l++e+e+++++++  e    ++++ +e++ + ++++el +++ + n+++ + +++le+ ++r   l + + +          +l+e++++l+e++ ++e le++ ++ + a+++ 
  MMETSP1061-20121228|15642_1 337 QMTDLEDQAAGYLRQimdLEGEVKKTATLQRQVDSLQKKLGILEKEKVVSSDSLKSSTAEVSKLKDTLAEAEKAKKLYMDELKELRAKQAVANEVVDVEGFD--SPAHVSTDQREKTMRLEIENTKLKSEIENFKKAVKtgEPVGPSQAKVDEMQGQINALKELLQKKIAENKKIVSDKDKLEAYTKRT--LAKFQDKY-------LVALQECKAKLKEKQDKIEVLESRSATEKSAQKRE 566
                  333344443333333000344444555567777777777777777777777777777777777777777777777777777777777777766554433322..2222222222333333333333333333332222200222333333344444444444444444444444444444444444442..22222222.......33344444444444444444433333333332222 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8  20.9   3.1e-05     0.032     873    1110 ..     202     448 ..     196     449 .. 0.76
   2 ?   -3.1  11.5      0.24   2.4e+02     273     470 ..     371     569 ..     358     573 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.1e-05
    TIGR02680  873 lreaaeeaaeqreraeraeseareaaedaaearaeaeeaslrlraleesvgaevdeirarlaevraaleslkrelrrlaeelataeeararaeekeaeaeaeld.eraeardhak......tllrelaltglledalrdtevpeleakstieaaLkvarrteaallqvaeddeald..raanriseevlelrrtlaalgadaeleeaDdikvvslvykgrretpaallarleqeiaerrelltereR 1110
                   l +a++  + +  +ae++e+++ ea+ + a+++   +e+++   + +  + a v+++++rla+ + +l   + elr + +el +++ + +++ee++a+ ++eld + a+a +  k         ++l  +g++++  +d+e +++    +i     + ++t+    qv+  +++l+  + ++ +s + l+   +  ++ +d+ +e++  +k+    +k+ r++ a+  ++++ e  ++   +++  R
  MMETSP1061-20121228|15642_1  202 LFHANHLKRSSDGDAEELEQALIEAKRELAAQKSVMNEVREDADKAQSKLRALVEDLQDRLAKRQDELITSEEELRDATNELDDLKSRVGELEEERAQLADELDlASAKATQLHKaeatvmAYKKKLEGVGVMNQQMTDLEDQAAGYLRQIMDLEGEVKKTATLQRQVDSLQKKLGilEKEKVVSSDSLKSSTAEVSKLKDTLAEAEKAKKLYMDELKELRAKQAVANEVVDVEGFDSPAHVSTDQR 448 
                   45666677777778888888888888888888888888888888888888888999999999999999999999999999999999999999999988777766233344443330000004457777899999999999999888766555555577888899999******99832345669999999999999999999999999999998889999999888888888887777777666666 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 0.24
    TIGR02680 273 sAqkqldelsrdlgeakdelekareeereldartealeaeaealrtrleaLqeseayq....kakeleraraeaealqkaaaeaekavaeaesreeeerrrldeeaarleeaeeelraareelareAeraglseahtaeplaalaaqelqelgalaldarrqdadrviaerselvallrrrvdeadeaeaesaaaraardel 470
                  s qk+l  l+++   + d l+   +e  +l++ + ++e++++   ++l++L++++a++    +++ ++   + +++++++  + e + ++ +s+ e++++++++  + ++  + ++ + +++++  A + +l++   +++ ++ ++ +l++ ++ +l+  ++    + +e ++++++ + ++++ +   a+++ a+++ ++l
  MMETSP1061-20121228|15642_1 371 SLQKKLGILEKEKVVSSDSLKSSTAEVSKLKDTLAEAEKAKKLYMDELKELRAKQAVAnevvDVEGFDSPAHVSTDQREKTMRLEIENTKLKSEIENFKKAVKT-GEPVGPSQAKVDEMQGQIN--ALKELLQKKIAENKKIVSDKDKLEAYTKRTLAKFQDKYLVALQECKAKLKEKQDKIEVLESRSATEKSAQKREERL 569
                  4466666778888889999999999999999999999999999999999**99998763333578888888888999999999999999999999999988876.5678888999999999986..88999********************998888888877777778888888888888887777777777777777765 PP

>> TIGR00833  actII: transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   6.6    0.0079       8.1     473     662 ..     249     440 ..     224     473 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0079
    TIGR00833 473 gelgdkldeatklleerldqllqdaeklaeaiaalrllqalmdllgenasqvvlavralqdalsklrdeaedvadiasPl..rsalaaepeCrsdPvCrtareivqaaddvvevaakladevgdlartvatldsalkqvssllkaldglrtklaqmresaagvadllneLsDyvktlgkvlgeaagvd....lyip 662
                  ++l +  ++  + l +r+d+l   +e+l++a ++l+ l+  +  l e+  q+  ++ +   + ++l++  + v  + + l  + +++ +     d +    r+i++   +v + +a l+ +v+ l++    l++   +v+s  ++l +  +++ +++++ a          D++k+l + +  a++v     +  p
  MMETSP1061-20121228|15642_1 249 SKLRALVEDLQDRLAKRQDELITSEEELRDATNELDDLKSRVGELEEERAQLADELDLASAKATQLHKAEATVMAYKKKLegVGVMNQQMTDLEDQAAGYLRQIMDLEGEVKK-TATLQRQVDSLQKKLGILEKE--KVVS-SDSLKSSTAEVSKLKDTLAEAEKAKKLYMDELKELRAKQAVANEVVdvegFDSP 440
                  44555566677888888*******************99999999999999999999999999999999999999999988333567777777888899999999999999888.667777788887777766643..2322.344555555555555555544444445566666665544444444333355555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       491  (0.119698); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.59u 0.15s 00:00:00.74 Elapsed: 00:00:00.54
# Mc/sec: 1439.66
//
Query:       MMETSP1061-20121228|15644_1  [L=342]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-09   34.5   0.0    3.4e-06   24.9   0.0    2.2  2  TIGR02072 BioC: biotin biosynthesis protein BioC
    4.1e-07   27.5   0.0    8.4e-07   26.5   0.0    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    2.1e-06   25.0   0.0    4.2e-06   24.1   0.0    1.5  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    4.7e-05   20.6   0.0      8e-05   19.9   0.0    1.3  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00027   17.4   0.0    0.00041   16.8   0.0    1.2  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
     0.0014   16.0   0.0     0.0026   15.2   0.0    1.4  1  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
     0.0039   15.3   0.1      0.011   13.9   0.0    1.7  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
  ------ inclusion threshold ------
      0.017   12.4   0.0      0.028   11.7   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
      0.044   11.3   0.0       0.17    9.4   0.0    1.8  2  TIGR00537 hemK_rel_arch: putative methylase
      0.049   10.9   0.0      0.083   10.1   0.0    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   8.2e-09   3.4e-06       6      79 ..      19      92 ..      16     102 .. 0.78
   2 !    7.4   0.0    0.0018      0.72      90     111 ..     147     168 ..     128     203 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 8.2e-09
    TIGR02072  6 aktYdqha...kvQreiakkLlellkekrkfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls 79
                 a +Y++++   +vQrei+ + +ell      e++ vLdiGcG+G+  + l+++     ++  D+s  ml++a ++ +
  MMETSP1061-20121228|15644_1 19 ARKYNSSSrmiNVQREITVRAIELLLLP-PDETSLVLDIGCGSGLSGQVLEEQGHV--WVGCDVSRDMLQVAHERME 92
                 5556665533379***********9996.57889**********666666666655..5************999876 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.0018
    TIGR02072  90 klplekksfDlivSnlalQWld 111
                   lp++ ++fD  vS +alQWl 
  MMETSP1061-20121228|15644_1 147 GLPFRPATFDACVSISALQWLC 168
                  4899****************85 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     2e-09   8.4e-07      40     100 ..      37      95 ..      17     108 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 2e-09
    TIGR02021  40 mrekllewlpkdslkGkkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraeked 100
                  +r+  l  lp d  + + vlD GCG+Gl    l ++G   ++ D+s +++++a++r+e++ 
  MMETSP1061-20121228|15644_1  37 VRAIELLLLPPD--ETSLVLDIGCGSGLSGQVLEEQGHVWVGCDVSRDMLQVAHERMEESY 95 
                  445567777766..7889**************************************99865 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0     1e-08   4.2e-06      50      94 ..      50      94 ..      13     102 .. 0.80
   2 ?   -3.7   0.0       3.1   1.3e+03      56      64 ..     220     228 ..     210     246 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1e-08
    TIGR01983 50 glkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkd 94
                    vlD+GcG+Gl  + l ++g + +g D+s+++++vA++  +++
  MMETSP1061-20121228|15644_1 50 TSLVLDIGCGSGLSGQVLEEQGHVWVGCDVSRDMLQVAHERMEES 94
                 5569**********************************9987765 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3.1
    TIGR01983  56 vGcGgGlls 64 
                  vG GgG++ 
  MMETSP1061-20121228|15644_1 220 VGFGGGIVV 228
                  889999875 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   1.9e-07     8e-05      33      86 ..      43      96 ..      16     103 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.9e-07
    TIGR01934 33 kkieeekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek.e 86
                   + + +++ vlD+ +G+G     l+++     +g+D+s +mL+va+++++e+ +
  MMETSP1061-20121228|15644_1 43 LLLPPDETSLVLDIGCGSGLSGQVLEEQG-HVWVGCDVSRDMLQVAHERMEESyK 96
                 4444558889*********9887777766.5578***************988733 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0     1e-06   0.00041     255     328 ..      18      93 ..       5     103 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1e-06
    TIGR04074 255 eeeeekekkvslaeqRleavva....alresgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkl 328
                  e+++ ++++  ++ qR  +v a     l   ++  vlD+GcG+g  l+  + e+q +  vg+dvs   L++a++r++ 
  MMETSP1061-20121228|15644_1  18 EARKYNSSSRMINVQREITVRAiellLLPPDETSLVLDIGCGSG--LSGQVLEEQGHVWVGCDVSRDMLQVAHERMEE 93 
                  33344444455566666555442111345567889********9..44444466677889***************974 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.2e-06    0.0026      12      93 ..      16      94 ..       9     107 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.2e-06
    TIGR02752 12 ekiykkydrmnsvisfkrhkkwrkdtmkrmnvqkgkkaldvccgtadwaialaeavgkegev.kgldfsenmlsvgkekvkda 93
                 ek  +ky++   +i ++r  + r   +  +  ++ + +ld+ cg++      ++ + ++g+v +g d s++ml+v++e+++++
  MMETSP1061-20121228|15644_1 16 EKEARKYNSSSRMINVQREITVRAIELLLLPPDETSLVLDIGCGSGLS----GQVLEEQGHVwVGCDVSRDMLQVAHERMEES 94
                 56678999************************************9854....455567899956**************99875 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.6e-05     0.011       6      31 ..      36      61 ..      32      88 .. 0.91
   2 ?   -2.8   0.0       3.8   1.6e+03     102     121 ..     210     229 ..     206     230 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.6e-05
    TIGR02469  6 evRaltLakLrlkkgdvllDiGaGtG 31
                  vRa+ L  L + +++ +lDiG+G+G
  MMETSP1061-20121228|15644_1 36 TVRAIELLLLPPDETSLVLDIGCGSG 61
                 5899999999999999*********9 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 3.8
    TIGR02469 102 keileaverrlrpggrivln 121
                  +++++++ + +  gg iv++
  MMETSP1061-20121228|15644_1 210 AVLISECATAVGFGGGIVVD 229
                  57899999999999999885 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   6.7e-05     0.028      85     134 ..      46      93 ..      33     101 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.7e-05
    TIGR03534  85 kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakr 134
                  + +e+  vlD+g+GsG  +  l ++      +++D+s++ l+va++ +++
  MMETSP1061-20121228|15644_1  46 PPDETSLVLDIGCGSGLSGQVLEEQ--GHVWVGCDVSRDMLQVAHERMEE 93 
                  5566679*********999888776..6667899**********987766 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00041      0.17      21      59 ..      51      89 ..      41      99 .. 0.83
   2 ?   -1.3   0.0      0.79   3.2e+02     119     147 ..     181     209 ..     174     228 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00041
    TIGR00537 21 ddvleiGaGtGlvairlkekgkkivatdinPfavkllke 59
                   vl+iG G+Gl    l+e+g+  v+ d++    ++++e
  MMETSP1061-20121228|15644_1 51 SLVLDIGCGSGLSGQVLEEQGHVWVGCDVSRDMLQVAHE 89
                 459**************************9776666655 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.79
    TIGR00537 119 idrfldelpeilkegGrvqlvqsslsdek 147
                  + rf+ +l  ilk+  r++l     + e+
  MMETSP1061-20121228|15644_1 181 LVRFFSSLYSILKKSARAVLQFYPETAEQ 209
                  56999999999999999987655555555 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0    0.0002     0.083     160     211 ..      50     102 ..      34     106 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.0002
    TIGR00406 160 dkkviDvGcGSGiLsiaalklgaakvvavDi..DplavesarkNlelNqvsdll 211
                     v+D+GcGSG+ +  +  +g +  v++D+  D l v   r   +  +v+d++
  MMETSP1061-20121228|15644_1  50 TSLVLDIGCGSGLSGQVLEEQG-HVWVGCDVsrDMLQVAHERMEESYKKVKDEN 102
                  4679********8777777776.5667888644888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (342 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1805.61
//
Query:       MMETSP1061-20121228|15645_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1267.10
//
Query:       MMETSP1061-20121228|15663_1  [L=419]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (419 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 2048.28
//
Query:       MMETSP1061-20121228|15671_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   14.7   1.1     0.0024   14.5   0.8    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.8   5.9e-07    0.0024     277     399 ..      66     192 ..      47     296 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 5.9e-07
    TIGR01645 277 avtPPdallqPatvsalPaaaavaaaaatakitaaeavagaavlglraqspatassslvtdieakavvssakkeae.evpa..lpqaapavlkdeviteekP.vaPsllaiPslvaplglvaPtein 399
                   +t P++ ++ +t++ +         a+ a ++++++   +++  +r+qs a   + l++   ++   s++kk  + ++p   +p+   +  ++++i   +  vaP  la+ +l+ +l+ ++    n
  MMETSP1061-20121228|15671_1  66 PITIPESRATTTTSAPMSQEDKELQRAIQASLQTQQSTNKNTTKQPRQQSAASRNAGLAAASRNQNKNSPPKKSLAtTHPKvqMPKRLSQHDQEDIIMRCTSrVAPYSLAVDTLLRSLKTIQANPSN 192
                  57888888888888888888888999*******************************************9988655366651156666666666677766655****************99764444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 1775.47
//
Query:       MMETSP1061-20121228|15685_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 826.37
//
Query:       MMETSP1061-20121228|15711_1  [L=765]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.26
# Mc/sec: 3883.53
//
Query:       MMETSP1061-20121228|15741_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-07   27.1   0.5    7.1e-07   27.0   0.3    1.2  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.3   1.7e-10   7.1e-07      42      80 ..      42      80 ..      21     127 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.7e-10
    TIGR03789 42 ealiGlgsGallGavVgGPvGaiiggitGgligqavand 80
                 ++ +  gsGa+ G++  GPvG+++ggi+G l+g   ++d
  MMETSP1061-20121228|15741_1 42 KQSLWAGSGAMAGGMMFGPVGGLVGGIAGSLVGFVRTSD 80
                 5556679*************************9765555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 824.93
//
Query:       MMETSP1061-20121228|15763_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 813.93
//
Query:       MMETSP1061-20121228|15775_1  [L=666]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (666 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 2585.43
//
Query:       MMETSP1061-20121228|15786_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       191  (0.0465627); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2322.03
//
Query:       MMETSP1061-20121228|15789_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2653.92
//
Query:       MMETSP1061-20121228|15824_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|15836_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-91  303.5   0.0    9.9e-91  302.3   0.0    1.5  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    1.4e-13   49.0   0.0    2.7e-13   48.0   0.0    1.5  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    7.2e-12   42.9   0.0    1.2e-11   42.2   0.0    1.3  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    4.7e-11   40.6   0.0      8e-11   39.9   0.0    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    2.2e-09   35.0   0.0    4.3e-09   34.0   0.0    1.4  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    3.8e-06   23.4   0.0    5.8e-06   22.8   0.0    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    0.00063   17.1   0.0       0.02   12.1   0.0    2.3  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
  ------ inclusion threshold ------
      0.027   11.7   0.0      0.041   11.1   0.0    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  302.3   0.0   1.9e-93   9.9e-91       4     285 ..      50     357 ..      48     386 .. 0.88

  Alignments for each domain:
  == domain 1    score: 302.3 bits;  conditional E-value: 1.9e-93
    TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkdsytilkldlasldsvrkfveqfre..sgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvtanskelag.kvpikadlgdlsgleaglkaaniamidgkefkaakaykdsklcnmltvrelhrryhdetgivfaslypgcvadtglfrehlplfrtlfppfqkyitkgyvseeeagkrlaqvvadpklkksgvywswgkrq..........................e 285
                  + v++tg+ssglg +aa al+  g++hv+ a rdl+k e +a+  g+  d +t l+ +l s+ svr+f ++++e   ++++d l+cna vy p+l+  ++sad++e ++  n l hfl+   ll  + +  ++d+r+i++gsvt+n ++++g  v + adl +l+g+e g+k++ i+m dg  f +akaykdsklc m+ ++ lh +yh+ tg++f s+ypgc+a+++lfre+   frt fp f k+it+g+v e+eag+rl qv  dp+  ksgvywsw+                             +
  MMETSP1061-20121228|15836_1  50 KLVVVTGTSSGLGRKAALALLRSGEYHVIGAVRDLDKMEAVAEIDGFDMDHFTPLECELNSFASVRQFCDNLNEfrMEKPIDRLICNAGVYQPTLDYAKWSADNHEQTMQINFLSHFLMISKLLPSMMD--SSDPRVIMVGSVTGNDNTVGGgGVYPIADLHELEGFENGFKNP-IPMADGYGFIGAKAYKDSKLCLMMMANFLHYKYHKLTGVTFCSMYPGCIAESPLFREKREWFRTYFPIFMKFITGGFVGEHEAGQRLFQVAHDPRCAKSGVYWSWNGGPregrgsealekggqisggggagggwdS 357
                  5699*****************************************************************998863379******************************************999998865..5789**************975279999****************.9********************************************************************************************************9644334555555555555555555555544 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   5.3e-16   2.7e-13       1     140 [.      52     194 ..      52     202 .. 0.86

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 5.3e-16
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagv.kaaavkldvsdeeevkelveevee..elgeidilvnnAGitrDkl.llrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgll 140
                  ++vtG+s g+G+  a++l ++g   vi  +++ +k+ e+++e+    + + + +++++++ ++v++++++++e    + id l++nAG+ + +l   + + +++++ +++n  + f ++ + l +m+ +   r+i ++sv g  
  MMETSP1061-20121228|15836_1  52 VVVTGTSSGLGRKAALALLRSGEYHVIGAVRDLDKM-EAVAEIDGFDMdHFTPLECELNSFASVRQFCDNLNEfrMEKPIDRLICNAGVYQPTLdYAKWSADNHEQTMQINFLSHFLMISKLLPSMMDSSDPRVIMVGSVTGND 194
                  68********************98888767666665.55566776554156789***************9987324579************9995679999***************************************9965 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   2.4e-14   1.2e-11       2     141 ..      50     193 ..      49     215 .. 0.86

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 2.4e-14
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle.eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaa..efgsldiLvnnAGi.qhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhgl 141
                  k ++vtG++sG+g++ a +l + G   v+  ++  +++ea+a+       + + l+ ++ + +++++  +++++      +d L+ nAG+ q      ++  +++e+ +++n  s f +i + lp m ++   r+i ++sv g 
  MMETSP1061-20121228|15836_1  50 KLVVVTGTSSGLGRKAALALLRSGEYHVIGAVRdLDKMEAVAEIDGFDMDHFTPLECELNSFASVRQFCDNLNEfrMEKPIDRLICNAGVyQPTLDYAKWSADNHEQTMQINFLSHFLMISKLLPSMMDSSDPRVIMVGSVTGN 193
                  789*********************9888888873566666666666667778999*************999876213455899******96778889999*****************************************986 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   1.6e-13     8e-11       2     146 ..      51     198 ..      50     209 .. 0.90

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 1.6e-13
    TIGR01829   2 valvtGglgGiGtaickrlakdG.ykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakvea..elGpvdvlvnnaGitrdav.fkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfG 146
                  + +vtG++ G+G++ + +l + G y+v+ +v  + ++ +++++  ++  ++++ ++ +++sf + ++  +++++   + p+d l+ naG+ + ++ ++k ++++ e+ +++n+ s f +  +++ +m++ +  r+i + sv G    +G
  MMETSP1061-20121228|15836_1  51 LVVVTGTSSGLGRKAALALLRSGeYHVIGAV-RDLDKMEAVAEIDGFDMDHFTPLECELNSFASVRQFCDNLNEfrMEKPIDRLICNAGVYQPTLdYAKWSADNHEQTMQINFLSHFLMISKLLPSMMDSSDPRVIMVGSVTGNDNTVG 198
                  678***************9999945566555.599999******************************999987335789**********99876599*********************************************877666 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   8.5e-12   4.3e-09       6     141 ..      50     190 ..      47     199 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 8.5e-12
    TIGR01832   6 kvalvtGantGlGqgiavglaeaGa.divgvg.iselsetqekvealG.rkflslkadladeeaakalvdeave..eagkidilvnnaGiirre.davefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasl 141
                  k ++vtG+++GlG+  a++l ++G  +++g+    +  e+ ++++     +f+ l+ +l + ++++++ d+  e    + id l+ naG+ +   d  ++s  + ++ +++n+ + fl+  ++   ++++    ++i + s+
  MMETSP1061-20121228|15836_1  50 KLVVVTGTSSGLGRKAALALLRSGEyHVIGAVrDLDKMEAVAEIDGFDmDHFTPLECELNSFASVRQFCDNLNEfrMEKPIDRLICNAGVYQPTlDYAKWSADNHEQTMQINFLSHFLMISKLLPSMMDSS-DPRVIMVGSV 190
                  7899*******************9725666541345556666666543268999****************9887313458**********996549999********************999999888877.7788877776 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.1e-08   5.8e-06     412     536 ..      47     173 ..      38     196 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.1e-08
    TIGR02632 412 larrvalvtGgasGiGrevarrlvdeGa.hvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaeva..layGGvdivvnnaGiav.skpleeteleeWdlnldilatGyflvareaa 536
                    r++++vtG++sG+Gr+ a+ l   G  hv+ a  d +++eava+  +d f +d+   l+ ++ +  +v++  ++    +    +d ++ naG+   + ++ + ++++ + +++i+   +fl+  +  
  MMETSP1061-20121228|15836_1  47 GDRKLVVVTGTSSGLGRKAALALLRSGEyHVIGAVRDLDKMEAVAE--IDGFDMDHFTPLECELNSFASVRQFCDNLNefRMEKPIDRLICNAGVYQpTLDYAKWSADNHEQTMQINFLSHFLMISKLL 173
                  56899*********************96478888999999999987..568*******************997666541133468**********8724577888899**************9876655 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0     4e-05      0.02       5     157 ..      51     193 ..      48     209 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4e-05
    TIGR03971   5 valitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravvee..gveefGrldvvvanaGvlsygraf.elseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvagl 157
                  + ++tG++ G Gr +a++l + G    +i  +++l+++ + +     d+d+ +             ++++ +++ +r+  ++     +   +d ++ naGv + +  +   s+++ ++++++n+   +  +   +P +++      +i+v+sv+g 
  MMETSP1061-20121228|15836_1  51 LVVVTGTSSGLGRKAALALLRSGEY-HVIGAVRDLDKMEAVAEIDGFDMDHFTP-----------LECELNSFASVRQFCDNlnEFRMEKPIDRLICNAGVYQPTLDYaKWSADNHEQTMQINFLSHFLMISKLLPSMMDSS-DPRVIMVGSVTGN 193
                  5667777777777777777777743.3355556665555444444445554333...........23333444444443322002223346999*******998776636899***************************99.5678889999875 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     8e-05     0.041       2     144 ..      51     184 ..      50     192 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8e-05
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglek 144
                  l++vtG s G+Gr+ a  l +   +    ++   R+++ +  + aei+   +         +l++ + v ++   l+e   ++  +r+  i naG    +   +k    ++n ++  + n  s   + s+ll  + ++    +
  MMETSP1061-20121228|15836_1  51 LVVVTGTSSGLGRKAALALLR---SGEYHVIGAVRDLDKME-AVAEIDG-FDMDHFTPLECELNSFASVRQFCDNLNEFRMEKPIDRL--ICNAGVYQPTLDYAK--WSADNHEQTMQINFLSHFLMISKLLPSMMDSSDPRV 184
                  689************988877...66777777889999875.5688998.556667778899*************************7..569998887777777..345677888999999999999999988887654444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 2000.68
//
Query:       MMETSP1061-20121228|15851_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 446.25
//
Query:       MMETSP1061-20121228|15859_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1942.71
//
Query:       MMETSP1061-20121228|15885_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-11   39.4   0.1    8.8e-11   38.8   0.0    1.2  1  TIGR00717 rpsA: ribosomal protein S1
    1.2e-07   28.3   0.0    1.9e-07   27.7   0.0    1.3  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   4.3e-14   8.8e-11     186     284 ..      45     146 ..      23     154 .. 0.84

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 4.3e-14
    TIGR00717 186 kegeevkGvVknitdfgafv...dlggvdgllhitdlswkrvkhPseivevgdevkvkvikvDkekkrislslkqlkedPWeeiekkfkvgkkikgkvtnla 284
                  +++++v   V+ni d ga+v   + + ++g++ +++ls +r++  ++++ v+ +  v+v++vDkek++i ls ++++++  ++ e++f++ k ++g++ +la
  MMETSP1061-20121228|15885_1  45 EIESVVMVNVRNIADMGAYVsllEYDNIEGMILLSELSRRRIRSIHKLIRVNRNEVVMVLRVDKEKGYIDLSKRRVSPEDVQACEERFNKAKTVHGVLRHLA 146
                  4667788889*****998762225699*************************9999**************************************99988776 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.0   9.3e-11   1.9e-07     615     688 ..      43     119 ..       7     120 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 9.3e-11
    TIGR03591 615 evevgkvyegkvvkiadfgafvellp..gkdglvhiSelaeervekvedvlkegdevkvkvleidk.kgrvklsrka 688
                   +e+++v   +v +iad+ga+v+ll+  + +g++ +Sel+++r++++++ ++++ +  v vl +dk kg ++ls+++
  MMETSP1061-20121228|15885_1  43 YPEIESVVMVNVRNIADMGAYVSLLEydNIEGMILLSELSRRRIRSIHKLIRVNRNEVVMVLRVDKeKGYIDLSKRR 119
                  5899999*****************9633789**********************************87899**99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 1836.85
//
Query:       MMETSP1061-20121228|15879_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.7e-143  475.9   0.0   5.4e-143  474.9   0.0    1.4  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    3.4e-40  135.9   0.0    2.7e-23   80.2   0.0    2.1  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
      4e-40  136.0   0.0    3.5e-26   90.1   0.0    2.1  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    4.4e-38  128.5   0.0    2.1e-22   77.5   0.0    2.2  2  TIGR00231 small_GTP: small GTP-binding protein domain
    7.5e-37  125.0   0.0    1.1e-22   78.5   0.0    2.1  2  TIGR00436 era: GTP-binding protein Era
    2.2e-24   84.0   0.0    9.7e-13   46.0   0.0    3.1  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
    1.9e-22   77.7   0.3    3.7e-09   34.2   0.0    3.4  3  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
    4.6e-16   56.5   0.0    5.7e-09   33.0   0.1    2.1  2  TIGR00437 feoB: ferrous iron transport protein B
    3.9e-13   46.9   0.0    5.4e-06   23.4   0.0    2.4  2  TIGR03156 GTP_HflX: GTP-binding protein HflX
    5.5e-13   46.6   0.0    1.8e-05   21.9   0.0    3.1  3  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    1.5e-06   25.3   0.1     0.0094   12.8   0.0    3.0  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    1.9e-06   25.3   0.0      0.035   11.4   0.0    2.6  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.4e-05   22.6   0.0      0.029   11.7   0.0    2.7  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
    2.7e-05   20.4   0.5     0.0068   12.5   0.0    2.2  2  TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA
    2.9e-05   20.8   0.1    7.4e-05   19.4   0.0    1.6  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
      8e-05   18.8   0.1     0.0089   12.0   0.0    2.3  2  TIGR00993 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
     0.0001   19.3   0.1      0.053   10.4   0.0    2.4  2  TIGR00991 3a0901s02IAP34: GTP-binding protein
    0.00015   18.1   0.2       0.14    8.2   0.0    2.1  2  TIGR01393 lepA: GTP-binding protein LepA
     0.0015   14.0   0.0      0.031    9.6   0.0    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
     0.0025   14.8   0.1       0.26    8.2   0.0    2.4  2  TIGR00092 TIGR00092: GTP-binding protein YchF
      0.006   14.0   0.0        1.6    6.1   0.0    2.4  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
  ------ inclusion threshold ------
      0.025   11.7   0.0      0.054   10.6   0.0    1.5  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
      0.028   11.4   0.0          1    6.3   0.0    2.6  3  TIGR03680 eif2g_arch: translation initiation factor 2, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.9   0.0    3e-145  5.4e-143       1     432 []      99     608 ..      99     608 .. 0.90

  Alignments for each domain:
  == domain 1    score: 474.9 bits;  conditional E-value: 3e-145
    TIGR03594   1 pvvaivGrpNVGKStLfNrlvkkrk..AivedtpgvTRDrkygeaelkgkefiliDTgGl...eeeedelekeireqaelaieeadvilfvvdareglteeDeeiaklLrksk....kpvilvvNKvdnkke.eaeaaefyslGlgevlaiSaehgrgikdLldeileelpeeee.........................................................eeeeeeeee.......pikiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevkgkk.......ylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDategiseqDlkiaglileegkalvivvNKwDlv..kdekeleelkkeleeklkflkfapivfiSAltgkgveklleaikevyeslskristsklnrvleeavekhppplvk.gkrlklkYatqvktnpptfvlfvnrpeklkesYkrYLenklreefk.legvpirlefk 432
                  p vai+GrpNVGKS+++Nr++++++  Aiv+d++g+TRDr+y++a++ g++f+++DTgGl   ++e++ ++keireqa +ai+e++ +++vvd++ g+t  D +ia++Lrk+      pvil+vNK++++k  + +aaef++lGlge++++Sa hg g++++l++++ee++e+++                                                                         +i++ai+GrpNvGKS+L+N++ g++r+ivsd+aGtTrDsid  +e+  +        y+++DTAGirrk+kve + e + v+r+l+ai+radv+llv+Dat+g++eqD  +a+ i+++g+a+ i+ NKwD+v  kd++++++  k ++++++++++api+fiSA+tg++v k+++ ++e+  +++kr+sts ln+vl++a+  +ppp+ + g + k++Y+ qv+t+ppt+v+f+n+p+ ++++Y+rYL +k+re+++ +e +pir  f+
  MMETSP1061-20121228|15879_1  99 PLVAILGRPNVGKSAFVNRICGTQSggAIVADEEGITRDRTYRNANFLGENFQVVDTGGLvfdDNERTLFAKEIREQAMVAIDESSGVILVVDGQVGMTGMDLQIAEFLRKEVlsrnLPVILAVNKCESEKVgALNAAEFWNLGLGEPIPVSALHGVGTAEVLEHLFEEIKEKQSaalpefgtkvarlkeaklrknskkqlpgedeidfkmrkygigdiaqkiesdyeaalaA-------LdemerpeEINVAIVGRPNVGKSSLLNSIFGDQRAIVSDMAGTTRDSIDAIMERPPDVegdlptiYRFVDTAGIRRKGKVEFGPEFFMVNRALRAIRRADVALLVMDATAGVTEQDRILAQKIADDGRACAIICNKWDAVvdKDSSTYDKSVKYIRAEMPQIRWAPILFISAETGQRVGKIYSVVDEAIGAHRKRVSTSILNEVLRDAILWQPPPARRnGAQAKIYYCNQVSTRPPTIVVFCNDPKLVNDNYRRYLDRKFRESLDgFEATPIRWIFR 608
                  57*******************998544*********************************8844444459****************************************97444449***********9761556**********************************999888999999999999888877777777777766666666666666666665555555541.......044444448*******************************************9874333445666***************************************************************************99999*********************************************************************9976599******************************************9659*****98875 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   1.9e-17   3.3e-15       9     171 ..     100     272 ..      93     281 .. 0.82
   2 !   80.2   0.0   1.5e-25   2.7e-23       5     167 ..     338     520 ..     334     539 .. 0.75

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 1.9e-17
    TIGR03918   9 hialfGrrNaGKSsliNaltgqdv..aivsdvpGtTtDpvekamEllplGpvvliDTaGl..dD.egeL.GelRvektrevlektdlallvvdaeaeleeleeelleelke....kkipvivvlnkidlkeeeke.keklekkkeeevvlvsakekegieelkealiellpeea 171
                   +a++Gr N+GKS+++N ++g++   aiv+d +G T D  +++   l      ++DT Gl  dD e +L  +   e+++ ++++   ++lvvd +++++ ++ +++e l++    +++pvi+++nk+++++  +  +++  +    e++ vsa ++ g  e+ e+l+e+++e++
  MMETSP1061-20121228|15879_1 100 LVAILGRPNVGKSAFVNRICGTQSggAIVADEEGITRDRTYRNANFLGE-NFQVVDTGGLvfDDnERTLfAKEIREQAMVAIDESSGVILVVDGQVGMTGMDLQIAEFLRKevlsRNLPVILAVNKCESEKVGALnAAEFWNLGLGEPIPVSALHGVGTAEVLEHLFEEIKEKQ 272
                  589****************99875459****************998653.57899****7667734455155566889999*******************99998875554222289***********99987764555566666799*******************9998874 PP

  == domain 2    score: 80.2 bits;  conditional E-value: 1.5e-25
    TIGR03918   5 aerlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllp.....lGpv.vliDTaGldDegeL..Ge..lRvektrevlektdlallvvdaeaeleeleeelleelkekkipvivvlnkidlkeeeke..........keklekkkeeevvlvsakekegieelkealiell 167
                   e +++a++Gr N+GKSsl+N ++g++ aivsd++GtT D++   mE  p     l  +  ++DTaG+  +g++  G     v+++ ++++++d+allv+da+a+++e+++ l++++ +    + +++nk d++ ++++           +++ + +  +++++sa++++ + ++ + + e++
  MMETSP1061-20121228|15879_1 338 PEEINVAIVGRPNVGKSSLLNSIFGDQRAIVSDMAGTTRDSIDAIMERPPdvegdLPTIyRFVDTAGIRRKGKVefGPefFMVNRALRAIRRADVALLVMDATAGVTEQDRILAQKIADDGRACAIICNKWDAVVDKDSstydksvkyiRAEMPQIRWAPILFISAETGQRVGKIYSVVDEAI 520
                  56789******************************************876432223333269*******99876335422579*************************************************988765533322222212222333445556666666666666666665555 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.9   0.0     2e-14   3.5e-12     186     327 ..      74     226 ..      47     300 .. 0.77
   2 !   90.1   0.0     2e-28   3.5e-26     202     349 ..     334     492 ..     301     519 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.9 bits;  conditional E-value: 2e-14
    TIGR00450 186 lkkiiaelkdllnsr.kkleklkdglklaivGktNvGKSSLlNallkkd..raiVsdikGttRDvvEedleleGilvkllDtAGiReaadk..vEklGi.ekslkaikeadlvlyvlDaskpltkddeliitlkkk.....kkdlllvlNKiD 327
                  +++ + ++ ++     ++++ lk+   +ai+G++NvGKS+ +N +  ++   aiV+d +G tRD    + +  G  ++++Dt G+   +++  +    i e+++ ai+e++ v++v+D + ++t  d +i+++ +k     + +++l +NK +
  MMETSP1061-20121228|15879_1  74 IETPTSTMPKISSQPiRRYKALKKEPLVAILGRPNVGKSAFVNRICGTQsgGAIVADEEGITRDRTYRNANFLGENFQVVDTGGLVFDDNErtLFAKEIrEQAMVAIDESSGVILVVDGQVGMTGMDLQIAEFLRKevlsrNLPVILAVNKCE 226
                  555555666666542347999***9******************997655227********************************975444312444444378999*******************99977776554412222567888888865 PP

  == domain 2    score: 90.1 bits;  conditional E-value: 2e-28
    TIGR00450 202 kleklkdglklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedle....leGil...vkllDtAGiReaadkv....EklGiekslkaikeadlvlyvlDaskpltkddeliitl.kkkkkdlllvlNKiDLa.eleilkselkltvsllsakq 349
                  +  ++ + +++aivG++NvGKSSLlN +  ++raiVsd+ GttRD +++ +e    +eG l    + +DtAGiR +  kv    E   ++++l+ai++ad+ l+v+Da+ + t++d++++++     + + ++ NK D + ++++ + ++ +++  +++ q
  MMETSP1061-20121228|15879_1 334 E-MERPEEINVAIVGRPNVGKSSLLNSIFGDQRAIVSDMAGTTRDSIDAIMErppdVEGDLptiYRFVDTAGIRRKG-KVefgpEFFMVNRALRAIRRADVALLVMDATAGVTEQDRILAQKiADDGRACAIICNKWDAVvDKDSSTYDKSVKYIRAEMPQ 492
                  2.24566789***********************************99988865555999652226889******764.3412226789****************************8887651566799*********99866666666777777777665 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   6.7e-16   1.2e-13       2     151 ..      97     253 ..      96     265 .. 0.80
   2 !   77.5   0.0   1.2e-24   2.1e-22       3     162 ..     340     516 ..     338     518 .. 0.87

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 6.7e-16
    TIGR00231   2 keikivivGhvdvGKstLlnsllknk..isiteskpgvtrdyvteqieedGktykvnllDTaG....qedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkk....gvpiilvvnKiDlkddlktkvkslfaklnaepiielsaet 151
                  ke  ++i+G+++vGKs+  n++ +++  ++i+++++g+trd   +     G++  ++++DT+G      ++    +   +++ + +++ ++vilv+d + g +  + +i++ ++k+    + p+il+vnK+  ++ +    + +f +l+    i++sa +
  MMETSP1061-20121228|15879_1  97 KEPLVAILGRPNVGKSAFVNRICGTQsgGAIVADEEGITRDRTYRNANFLGEN--FQVVDTGGlvfdDNERTLFAKEIREQAMVAIDESSGVILVVDGQVGMTGMDLQIAEFLRKEvlsrNLPVILAVNKCESEK-VGALNAAEFWNLGLGEPIPVSALH 253
                  567799****************99885579999999***************66..********998744444556667899999********************999999888763333399*********9988.555555555555555555555555 PP

  == domain 2    score: 77.5 bits;  conditional E-value: 1.2e-24
    TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGkt......ykvnllDTaGqedfdair....rlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd.....dlktkvkslfaklnaep...iielsaetgknidklfklv 162
                  ei+++ivG+++vGKs+Llns+ +++++i+++ +g+trd + + i+e++        +   ++DTaG  ++ +++      +v+++ r ++ +d+++lv d+  g+++q++++++    +g    +  nK+D +      + +++vk ++a++ + +   i  +saetg+++ k++  v
  MMETSP1061-20121228|15879_1 340 EINVAIVGRPNVGKSSLLNSIFGDQRAIVSDMAGTTRDSIDA-IMERPPDvegdlpTIYRFVDTAGIRRKGKVEfgpeFFMVNRALRAIRRADVALLVMDATAGVTEQDRILAQKIADDGRACAIICNKWDAVVdkdssTYDKSVKYIRAEMPQIRwapILFISAETGQRVGKIYSVV 516
                  79***************************************8.888885689999988999*****666666652221357**********************************999*************99889899888888888888877542227779999999999998766 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.0   1.4e-14   2.6e-12       3     166 ..     101     271 ..      99     283 .. 0.81
   2 !   78.5   0.0   6.4e-25   1.1e-22       2     163 ..     342     520 ..     341     534 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 1.4e-14
    TIGR00436   3 vailGrpnvGKSTLlNkllgqki..sivSpkaqTTrnrisgiltegasqiifiDtPGlhek...khklnellvkeirkalsevdlilfvvdsdeknke.dellleklqklkapvvlalnkldnkekdkllelidk.easllefkeiveisalkgenveelkaiveaklreg 166
                  vailGrpnvGKS ++N+++g ++  +iv +    Tr r   +     ++   +Dt Gl  +   +  + + +  ++  a++e   +++vvd++      d  + e l+k    ++l +++  nk + +++ +++  e   l   e +++sal+g  + e+ + + ++++e 
  MMETSP1061-20121228|15879_1 101 VAILGRPNVGKSAFVNRICGTQSggAIVADEEGITRDRTYRNANFLGENFQVVDTGGLVFDdneRTLFAKEIREQAMVAIDESSGVILVVDGQVGMTGmDLQIAEFLRKEVLSRNLPVILAVNKCESEKVGALNAaEFWNLGLGEPIPVSALHGVGTAEVLEHLFEEIKEK 271
                  9*******************987559************988777767777789****9765222555677788888889999999********988777**********************9995555555555405555566699********99999888877777765 PP

  == domain 2    score: 78.5 bits;  conditional E-value: 6.4e-25
    TIGR00436   2 fvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgil.....tegasqii..fiDtPGlhek.khkln..ellvkeirkalsevdlilfvvdsdeknke.dellleklqklkapvvlalnkldnk.ek.....dkllelidkeasllefkeiveisalkgenveelkaiveakl 163
                   vai+GrpnvGKS LlN++ g++ +ivS++a TTr +i +i+     +eg   +i  f+Dt G+  k k +++   ++v  + +a++  d+ l+v+d+++   e d++l +k+ +  +   ++ nk d    k     dk+++ i+ e  ++  + i+ isa++g+ v ++ ++v + +
  MMETSP1061-20121228|15879_1 342 NVAIVGRPNVGKSSLLNSIFGDQRAIVSDMAGTTRDSIDAIMerppdVEGDLPTIyrFVDTAGIRRKgKVEFGpeFFMVNRALRAIRRADVALLVMDATAGVTEqDRILAQKIADDGRACAIICNKWDAVvDKdsstyDKSVKYIRAEMPQIRWAPILFISAETGQRVGKIYSVVDEAI 520
                  69**************************************984333345555566447*******99888886325899*********************99999*********************887644411111445555555555556669**********9999988887765 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   4.6e-11   8.2e-09      16     142 ..      96     228 ..      83     264 .. 0.76
   2 !   46.0   0.0   5.5e-15   9.7e-13       5     184 ..     327     515 ..     323     517 .. 0.77

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 4.6e-11
    TIGR03598  16 dklpeiafaGrSNvGKSsliNaLtnrk.klartSktPGrTqlinffev...neelrlvDlPGYGyakvskeekekwq.klieeYLekrenLkgvvllvDirhelkelDlellellkea....kipvlvvltKaDkl 142
                  +k p +a++Gr NvGKS+++N +++ +   a ++ + G T+   + +     e++ +vD  G  +      e++ ++ ++ e+ +   ++ +gv+l+vD +++++ +Dl++ e+l+++    ++pv++ ++K+   
  MMETSP1061-20121228|15879_1  96 KKEPLVAILGRPNVGKSAFVNRICGTQsGGAIVADEEGITRDRTYRNAnflGENFQVVDTGGLVFDDN---ERTLFAkEIREQAMVAIDESSGVILVVDGQVGMTGMDLQIAEFLRKEvlsrNLPVILAVNKCESE 228
                  45788******************986516899********9876655533378********9988654...4444440555678999999************************9986333366666666666544 PP

  == domain 2    score: 46.0 bits;  conditional E-value: 5.5e-15
    TIGR03598   5 ksaaklkqlpedklpeiafaGrSNvGKSsliNaLtnrkklartSktPGrTql.inffevneelrlvDlPG.YGyakvskeekekwqklieeYLekrenLkgv......vllvDirhelkelDlellellkeakipvlvvltKaDklkkse...lkkalkkvkkelkkeeekvevllfSslkkegieelkae 184
                  ++ a+l+++ + + +++a++Gr NvGKSsl+N++++ +  a +S   G T+  i     +   +  DlP  Y +  +   +++   ++  e++   ++L+++      +l++D+  +++e+D+ l + +++ ++ + ++++K D +  ++   ++k++k +++e+ + +  + +l++S+++++ + ++ ++
  MMETSP1061-20121228|15879_1 327 AALAALDEMERPEEINVAIVGRPNVGKSSLLNSIFGDQ-RAIVSDMAGTTRDsIDAIMERPPDVEGDLPTiYRFVDTAGIRRKGKVEFGPEFFMVNRALRAIrradvaLLVMDATAGVTEQDRILAQKIADDGRACAIICNKWDAVVDKDsstYDKSVKYIRAEMPQIRW-APILFISAETGQRVGKIYSV 515
                  56778899999999**********************88.89*********9537776666677778999768887776666665555555555555555543222322899*********************************99765511156677777777777755.599999***99998887765 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   7.2e-11   1.3e-08     111     180 ..      92     165 ..      73     183 .. 0.79
   2 !   34.2   0.0   2.1e-11   3.7e-09      95     155 ..     318     377 ..     290     384 .. 0.80
   3 !    7.2   0.1    0.0035      0.62      19     118 ..     427     535 ..     420     544 .. 0.73

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 7.2e-11
    TIGR03596 111 akglkkkairalvvGiPNvGKStliNrlakkkv..akvgnkpgvTksqqwik...lskeleLlDtPGilwpkled 180
                   k lkk+++ + ++G PNvGKS+++Nr+++ ++  a v+++ g+T+  +  +   l+++++++Dt G+++   e 
  MMETSP1061-20121228|15879_1  92 YKALKKEPL-VAILGRPNVGKSAFVNRICGTQSggAIVADEEGITRDRTYRNanfLGENFQVVDTGGLVFDDNER 165
                  455555554.789***************998865589*********987766222679*********99876555 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 2.1e-11
    TIGR03596  95 lkaikkllkekkeklkakglkkkairalvvGiPNvGKStliNrlakkkvakvgnkpgvTks 155
                  +++i++ +++  ++  +   ++++i++ +vG PNvGKS+l+N++ + + a v +++g T+ 
  MMETSP1061-20121228|15879_1 318 AQKIESDYEAALAA-LDEMERPEEINVAIVGRPNVGKSSLLNSIFGDQRAIVSDMAGTTRD 377
                  44444444444444.233456889***********************************97 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0035
    TIGR03596  19 lklvDvvievlDARiplssknpeleelvk..nkprlivlnkaDla...dpektkkwlkyfeekgk.....kalavnakkkkkvkkilkaikkllkekkeklkakglkkka 118
                  ++++Dv + v+DA + ++ ++  l++ ++   + + i+ nk D +   d+++++k +ky + +        +l+++a+++++v ki++ +++++ + +++  +  + ++ 
  MMETSP1061-20121228|15879_1 427 IRRADVALLVMDATAGVTEQDRILAQKIAddGRACAIICNKWDAVvdkDSSTYDKSVKYIRAEMPqirwaPILFISAETGQRVGKIYSVVDEAIGAHRKR-VSTSILNEV 535
                  6789***************999998877645799*********97322444555556666633222233367999****************999888877.444455555 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.1   3.2e-11   5.7e-09       1     200 [.     105     311 ..     105     345 .. 0.67
   2 !   21.5   0.0     1e-07   1.8e-05       1     111 [.     347     470 ..     347     484 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 3.2e-11
    TIGR00437   1 GnpNvGKstlfnaLtgsn...qkvgNwpGvTVekkegklelkgedieivDlPG.iYsLttvs..ldEkvardyllnekadLvvnvvdasn......leRnLyltlQllelgiplilalNlvdeAekkgirideekLeerLGvpvvplsatkgrgieelkkaideekaiklvekkkraieilkeaeslaevkeklkelkqkl.kkglevlegll 200
                  G pNvGKs+++n++ g++   + v+   G+T ++   + ++ ge++++vD+ G +++ ++ +    E+ +++ ++ ++   v+ vvd +       l+ + +l   +l  ++p+ila+N++ e+ek g    +e  +  LG p +p+sa +g g+ e+ +++ e    + +ek++ a++++       ++++  k+ k++l  +++ + ++ +
  MMETSP1061-20121228|15879_1 105 GRPNVGKSAFVNRICGTQsggAIVADEEGITRDRTYRNANFLGENFQVVDTGGlVFDDNERTlfAKEIREQAMVAIDESSGVILVVDGQVgmtgmdLQIAEFLRKEVLSRNLPVILAVNKC-ESEKVGALNAAEFWNLGLGEP-IPVSALHGVGTAEVLEHLFE----EIKEKQSAALPEFGTKVARLKEAKLRKNSKKQLpGEDEIDFKMRK 311
                  89*************98744469******************************568888888777899999999999999999999976433221145555688899*************8.689999877777788889988.7*********9998887773....333444444443332222222222222222222222222222222 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 1e-07
    TIGR00437   1 GnpNvGKstlfnaLtg.snqkvgNwpGvTVekkegklelkgedieivDlPGiYsLttvs...........ldE..kvardyllnekadLvvnvvdasn..leRnLyltlQllelgiplilalNlvde 111
                  G pNvGKs+l+n + g +++ v+  +G+T +   + +e +  d+e  DlP iY +++++             E   v r+  +  +ad+ + v+da++   e +  l   + + g  + ++ N++d 
  MMETSP1061-20121228|15879_1 347 GRPNVGKSSLLNSIFGdQRAIVSDMAGTTRDSIDAIME-RPPDVE-GDLPTIYRFVDTAgirrkgkvefgP-EffMVNRALRAIRRADVALLVMDATAgvTEQDRILAQKIADDGRACAIICNKWDA 470
                  89***********987256889*************999.889999.5********9998888888777641.3124556666667888888888887533677777777788888888888888875 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.6e-07   2.9e-05     181     349 ..      90     266 ..      78     268 .. 0.79
   2 !   23.4   0.0     3e-08   5.4e-06     147     349 ..     300     518 ..     280     520 .. 0.72

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.6e-07
    TIGR03156 181 rkkrkksevptvalvGYTNaGKstllnaltka...evlaedklFATLdpttrrlklpeeeevlltDTVGFirkLPheLvea..F.kaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkleeeeleeleekk...eeavlvsAkkgegleeLleaiee 349
                  r+ ++ ++ p va+ G  N GKs+++n+++++    ++++d+   T d t r+ ++  e ++ + DT G + +  ++ + a       +  + e+  ++ vvD     +   ++  e + +e+  ++ pv+l++Nk++  +  +l+++e  +    e + vsA +g g+ e+le++ e
  MMETSP1061-20121228|15879_1  90 RRYKALKKEPLVAILGRPNVGKSAFVNRICGTqsgGAIVADEEGITRDRTYRNANFLGE-NFQVVDTGGLVFDDNERTLFAkeIrEQAMVAIDESSGVILVVDGQVGMTGMDLQIAEFLRKEVLSRNLPVILAVNKCESEKVGALNAAEFWNlglGEPIPVSALHGVGTAEVLEHLFE 266
                  6667778899********************975557899****************9765.89999*****977655444331231345666778888999***9888888888888888899***************9998555555444333337899*****99999998887755 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 3e-08
    TIGR03156 147 pGEtklEtdrRlirerikklkkelekvekqreeqrkkrkksevptvalvGYTNaGKstllnaltk.aevlaedklFATLdpttrrlklpeee......evlltDTVGFirkLPheLveaF...kaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeeipvllvlNkidkle.......eeeleeleekkee.....avlvsAkkgegleeLleaiee 349
                  pGE +++ + R  +  i ++ +++e+  +      ++ ++ e ++va+vG  N GKs+lln++ + +++++ d+  +T d+    ++ p          + + DT G  rk   e+   F      L  +++ad+ l v+Da+   +e+         +++  +   + +++Nk+d++        +++++  ++++++      +++sA++g+ + ++ + ++e
  MMETSP1061-20121228|15879_1 300 PGEDEIDFKMR--KYGIGDIAQKIESDYEAALAALDEMERPEEINVAIVGRPNVGKSSLLNSIFGdQRAIVSDMAGTTRDSIDAIMERPPDVegdlptIYRFVDTAGIRRKGKVEFGPEFfmvNRALRAIRRADVALLVMDATAGVTEQDRILA----QKIADDGRACAIICNKWDAVVdkdsstyDKSVKYIRAEMPQirwapILFISAETGQRVGKIYSVVDE 518
                  77776666655..4568888888888777777888888899999*******************98367899******98876554443322212233255699****9999888887665344467***************9987666554333....4455666778899*****9984433333333333333333366666889999999999888887776 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.0     7e-07   0.00012     153     229 ..      96     172 ..      78     224 .. 0.78
   2 !   21.9   0.0     1e-07   1.8e-05     152     202 ..     335     382 ..     308     412 .. 0.76
   3 ?    1.7   0.0      0.14        25      93     152 ..     460     519 ..     445     528 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 7e-07
    TIGR03597 153 rekkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTld...lieipldkesvllDtpGiineeqianllskkd 229
                  +++  v ++G  NVGKS+++N+++ +++g      +    g T d    +   l ++ +++Dt G++ +++   l  k+ 
  MMETSP1061-20121228|15879_1  96 KKEPLVAILGRPNVGKSAFVNRICGTQSGGAI---VADEEGITRDrtyRNANFLGENFQVVDTGGLVFDDNERTLFAKEI 172
                  33445789****************99988777...455566666633144455699**********99988777666654 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 1e-07
    TIGR03597 152 are..kkdvyvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTldlieip 202
                  +++  + +v +vG  NVGKSsl+N++     g+++   +S   gTT d i+  
  MMETSP1061-20121228|15879_1 335 MERpeEINVAIVGRPNVGKSSLLNSIF----GDQR-AIVSDMAGTTRDSIDAI 382
                  3332357999****************9....5666.679*******9987654 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.14
    TIGR03597  93 kvllvvNKidllpk..svklekikewlkkeakeeglkpvdillvsakkkkglkellelikka 152
                   + ++ NK d + +  s++ +k  ++++ e+ +  +    il++sa++++ + ++ +++++a
  MMETSP1061-20121228|15879_1 460 ACAIICNKWDAVVDkdSSTYDKSVKYIRAEMPQIRWA--PILFISAETGQRVGKIYSVVDEA 519
                  567899***9886511456678888888888887777..8***************9998876 PP

>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00084      0.15     160     182 ..     101     123 ..      93     269 .. 0.59
   2 !   12.8   0.0   5.3e-05    0.0094     159     198 ..     342     382 ..     340     520 .. 0.55

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00084
    TIGR02729 160 vglvGlpnaGkStllsavsaakp 182
                  v+++G pn+GkS++++++  +++
  MMETSP1061-20121228|15879_1 101 VAILGRPNVGKSAFVNRICGTQS 123
                  89***************987664 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 5.3e-05
    TIGR02729 159 dvglvGlpnaGkStllsav.saakpkiadYpFtTlvPnLGv 198
                  +v++vG pn+GkS+ll+++  + ++ ++d   tT      +
  MMETSP1061-20121228|15879_1 342 NVAIVGRPNVGKSSLLNSIfGDQRAIVSDMAGTTRDSIDAI 382
                  69**************9982456666777777776554444 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   0.00019     0.035      24      73 ..      96     143 ..      92     147 .. 0.89
   2 ?   -1.7   0.0       1.9   3.4e+02     195     227 ..     143     175 ..     137     178 .. 0.84
   3 !   11.0   0.0   0.00026     0.046      20      52 ..     334     366 ..     317     388 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00019
    TIGR03410  24 ekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeerv 73 
                  +k+ +va+lGr  vGk++++  ++g+  ++ G+i  ++e it+ ++++ +
  MMETSP1061-20121228|15879_1  96 KKEPLVAILGRPNVGKSAFVNRICGT--QSGGAIVADEEGITRDRTYRNA 143
                  677899*******************7..579***********99998776 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 1.9
    TIGR03410 195 aleladrylvlerGevvaegekeeldeekvkkl 227
                  a  l++++ v++ G +v ++++++l +++++++
  MMETSP1061-20121228|15879_1 143 ANFLGENFQVVDTGGLVFDDNERTLFAKEIREQ 175
                  5667899**************999999999876 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00026
    TIGR03410  20 slevekgevvavlGrngvGkttllkalvgllkv 52 
                  ++e +++  va++Gr  vGk++ll ++ g +++
  MMETSP1061-20121228|15879_1 334 EMERPEEINVAIVGRPNVGKSSLLNSIFGDQRA 366
                  5777888889*****************997665 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0026      0.47     124     183 ..     100     158 ..      76     175 .. 0.86
   2 !   11.7   0.0   0.00016     0.029     126     156 ..     344     374 ..     303     379 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0026
    TIGR00157 124 isvfaGqSGVGKSSLiNlldpevkqkvkevseklklGkhTTtsvelfhlqgGliiDtPGf 183
                  +  + G+  VGKS+ +N++ ++++     v ++ +  ++ T +   f  ++  ++Dt G+
  MMETSP1061-20121228|15879_1 100 LVAILGRPNVGKSAFVNRICGTQSGGAI-VADEEGITRDRTYRNANFLGENFQVVDTGGL 158
                  556789999************9998887.99999*****999999999999999999997 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 0.00016
    TIGR00157 126 vfaGqSGVGKSSLiNlldpevkqkvkevsek 156
                   ++G+  VGKSSL+N + + +++ v+++ ++
  MMETSP1061-20121228|15879_1 344 AIVGRPNVGKSSLLNSIFGDQRAIVSDMAGT 374
                  478999******************9998776 PP

>> TIGR01394  TypA_BipA: GTP-binding protein TypA/BipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0     0.003      0.53      89     129 ..     184     228 ..     129     238 .. 0.76
   2 !   12.5   0.0   3.8e-05    0.0068       4     140 ..     343     482 ..     341     520 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.003
    TIGR01394  89 dgvlllvDaseGp....lpqtrfvlkkalelglkpivvinkiDrp 129
                   gv+l+vD + G     l  + f  k  l+ +l +i+ +nk + +
  MMETSP1061-20121228|15879_1 184 SGVILVVDGQVGMtgmdLQIAEFLRKEVLSRNLPVILAVNKCESE 228
                  49*******998633234568999999**************9866 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 3.8e-05
    TIGR01394   4 iaiiahvDhGkttlvDklLkqsgvlrekeeveervmDsndlererGitilakntavkykdtkinivDtPGhaDfGGe...vervlsmv...dgvlllvDaseGplpqtrfvlkkalelglkpivvinkiDrpdarpeevvdev 140
                  +ai+   + Gk  l+++++ + +++ +  +++ +  Ds d   er   +     ++ y+ +    +   G  +fG e   v+r l  +   d +ll++Da+ G+  q r   +k  + g +  ++ nk D    + ++  d++
  MMETSP1061-20121228|15879_1 343 VAIVGRPNVGKSSLLNSIFGDQRAIVS--DMAGTTRDSIDAIMERPPDVEGDLPTI-YRFVDTAGIRRKGKVEFGPEffmVNRALRAIrraDVALLVMDATAGVTEQDRILAQKIADDGRACAIICNKWDAVVDKDSSTYDKS 482
                  555555555555555555555444332..334444455555555555555554443.444444555666788888886667777765433399***********************************987666655555554 PP

>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.3     4e+02      66     112 ..     175     224 ..     168     233 .. 0.66
   2 !   19.4   0.0   4.1e-07   7.4e-05      64     157 ..     420     512 ..     413     525 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.3
    TIGR00475  66 nalagvggidaalLvvdadeGv...kaqtkEHLavlkllgikelivvltK 112
                  +a+ ++   ++++Lvvd + G+     q  E L+   l  +  +i +++K
  MMETSP1061-20121228|15879_1 175 QAMVAIDESSGVILVVDGQVGMtgmDLQIAEFLRKEVLSRNLPVILAVNK 224
                  56677888889999999886541115688888775544444446666666 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 4.1e-07
    TIGR00475  64 lknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeeevkevEeelkeileeeeflknakivkvsAktGqGieeL 157
                  ++ al ++  +d alLv+da  Gv  q +   + +   + +   ++ +K D v ++     ++ +k i+ e    + a i+ +sA+tGq ++++
  MMETSP1061-20121228|15879_1 420 VNRALRAIRRADVALLVMDATAGVTEQDRILAQKIAD-DGRACAIICNKWDAVVDKDSSTYDKSVKYIRAEMPQIRWAPILFISAETGQRVGKI 512
                  456999*******************998743322222.334467788******************************************88765 PP

>> TIGR00993  3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0      0.01       1.9     121     190 ..     101     172 ..      93     211 .. 0.73
   2 !   12.0   0.0     5e-05    0.0089     118     155 ..     340     377 ..     314     411 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.01
    TIGR00993 121 ilvlGkaGvGksatinsilgevka.sidafglattsvrei.eGlvdGvkirvidtpGlkssaldqsknekvl 190
                  + +lG+  vGksa +n i g +   +i a + + t+ r   +    G + +v+dt Gl     +++  +k +
  MMETSP1061-20121228|15879_1 101 VAILGRPNVGKSAFVNRICGTQSGgAIVADEEGITRDRTYrNANFLGENFQVVDTGGLVFDDNERTLFAKEI 172
                  5689***************99874267777777777665514567799999999999987777766666655 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 5e-05
    TIGR00993 118 slnilvlGkaGvGksatinsilgevkasidafglatts 155
                   +n+ ++G+  vGks+ +nsi+g+++a ++ +  +t+ 
  MMETSP1061-20121228|15879_1 340 EINVAIVGRPNVGKSSLLNSIFGDQRAIVSDMAGTTRD 377
                  579999********************998876655542 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0054      0.96      41      97 ..     101     159 ..      90     193 .. 0.81
   2 !   10.4   0.0    0.0003     0.053      34      69 ..     336     371 ..     308     382 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0054
    TIGR00991  41 ilvmgkggvgksstvnsiigervaavsafqseglrpvlvsrtra..gftlniidtpgli 97 
                  + ++g+  vgks+ vn i g +       + eg+      r     g  ++++dt gl+
  MMETSP1061-20121228|15879_1 101 VAILGRPNVGKSAFVNRICGTQSGGAIVADEEGITRDRTYRNANflGENFQVVDTGGLV 159
                  6689*****************99988888999986655555443227778899999997 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.0003
    TIGR00991  34 edvssltilvmgkggvgksstvnsiigervaavsaf 69 
                  e  + + + ++g+  vgkss +nsi g++ a vs +
  MMETSP1061-20121228|15879_1 336 ERPEEINVAIVGRPNVGKSSLLNSIFGDQRAIVSDM 371
                  4456788999*******************9999976 PP

>> TIGR01393  lepA: GTP-binding protein LepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0   0.00094      0.17      90     183 ..     179     272 ..     139     279 .. 0.77
   2 !    8.2   0.0   0.00081      0.14      79     180 ..     409     521 ..     342     539 .. 0.74

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00094
    TIGR01393  90 slaaceGalllvdaaqGveaqt..lanvyl..alekdleiiPvinkidlPsadvervkkeieeviGldaeeailvsaktGigieelleaivkkvpaPk 183
                  ++  + G++l+vd   G+      +a++    +l ++l +i  +nk +    +v +   + +e+  l   e i vsa +G+g  e+le++ +++ + +
  MMETSP1061-20121228|15879_1 179 AIDESSGVILVVDGQVGMTGMDlqIAEFLRkeVLSRNLPVILAVNKCESE--KVGA--LNAAEFWNLGLGEPIPVSALHGVGTAEVLEHLFEEIKEKQ 272
                  567789********999887651155554233799999999999998643..3333..35567777777899******************99998765 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00081
    TIGR01393  79 Ghvdfsye...vsrslaa...ceGalllvdaaqGveaqtlanvylalekdleiiPvink....idlPsadvervkkeie.eviGldaeeailvsaktGigieelleaivkkvp 180
                  G v+f  e   v r+l a   ++ all++da+ Gv  q    +    +       + nk    +d  s+  ++  k i+ e+  +  + ++ +sa tG+ + ++   + + + 
  MMETSP1061-20121228|15879_1 409 GKVEFGPEffmVNRALRAirrADVALLVMDATAGVTEQDRILAQKIADDGRACAIICNKwdavVDKDSSTYDKSVKYIRaEMPQIRWAPILFISAETGQRVGKIYSVVDEAIG 521
                  5677764333377777662226889**********9998776666667666777778993333445566666666666524456788889999*****999999877766665 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.032       5.7      85     115 ..      96     126 ..      83     143 .. 0.80
   2 !    9.6   0.0   0.00017     0.031      37     117 ..     289     370 ..     257     385 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.032
    TIGR00956  85 kpgelvvvLGrPgsGcstlLksiasktegfk 115
                  k   lv +LGrP  G+s+++  i ++ +g +
  MMETSP1061-20121228|15879_1  96 KKEPLVAILGRPNVGKSAFVNRICGTQSGGA 126
                  5567999***************999877654 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00017
    TIGR00956  37 vegvaadaeyqstlvnillklleeilrklkkekeskkfdilkdvdglikpgelvv.vLGrPgsGcstlLksiasktegfkkg 117
                  ++  ++++++++   +i +k+ + ++  + ++ es++ + l  +d + +p e+ v ++GrP  G+s+lL si ++ +    +
  MMETSP1061-20121228|15879_1 289 AKLRKNSKKQLPGEDEIDFKMRKYGIGDIAQKIESDYEAALAALDEMERPEEINVaIVGRPNVGKSSLLNSIFGDQRAIVSD 370
                  4446667777788888999999999***************************976489**************9987766554 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.024       4.2       6      27 ..     102     123 ..      98     128 .. 0.84
   2 !    8.2   0.0    0.0014      0.26       5      26 ..     343     364 ..     340     409 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.024
    TIGR00092   6 GivGLpnvGkstlfqaitkakl 27 
                   i G pnvGks + + i  ++ 
  MMETSP1061-20121228|15879_1 102 AILGRPNVGKSAFVNRICGTQS 123
                  699***********99987665 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0014
    TIGR00092   5 aGivGLpnvGkstlfqaitkak 26 
                    ivG pnvGks l ++i   +
  MMETSP1061-20121228|15879_1 343 VAIVGRPNVGKSSLLNSIFGDQ 364
                  67**************997555 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0089       1.6      24      69 ..      98     141 ..      84     151 .. 0.81
   2 ?    5.4   0.0     0.015       2.7      26      48 ..     342     364 ..     319     386 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0089
    TIGR01277  24 GervailGesGaGkstllnliaGflepasGeikvndkdhtrsapye 69 
                     vailG    Gks+++n i G      G+i  +++  tr   y+
  MMETSP1061-20121228|15879_1  98 EPLVAILGRPNVGKSAFVNRICGTQ--SGGAIVADEEGITRDRTYR 141
                  5679*******************65..5688888887777766665 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.015
    TIGR01277  26 rvailGesGaGkstllnliaGfl 48 
                  +vai+G    Gks+lln i G  
  MMETSP1061-20121228|15879_1 342 NVAIVGRPNVGKSSLLNSIFGDQ 364
                  69***************998865 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0003     0.054      32      97 ..     170     235 ..     157     237 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0003
    TIGR02154  32 aedaeealalikeelPdlilldWmlpgtsG..ielarrlrkeeetreiPiimltargeeedrvrglet 97 
                   e  e+a+++i+e+   ++++d  +  ++G  +++a  lrke   r++P+i+   +  e+++v +l++
  MMETSP1061-20121228|15879_1 170 KEIREQAMVAIDESSGVILVVDGQVG-MTGmdLQIAEFLRKEVLSRNLPVILAVNKC-ESEKVGALNA 235
                  44568999999999999999998874.55512678999************9766665.7889999986 PP

>> TIGR03680  eif2g_arch: translation initiation factor 2, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.18        31     175     203 ..     247     275 ..     243     290 .. 0.84
   2 ?   -1.2   0.0       1.1     2e+02       4      28 ..     339     363 ..     336     370 .. 0.87
   3 ?    6.3   0.0    0.0058         1     106     213 ..     431     537 ..     416     546 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.18
    TIGR03680 175 iPvsalkkvnidvllealekeiptperdl 203
                  iPvsal+ v    +le l +ei++++   
  MMETSP1061-20121228|15879_1 247 IPVSALHGVGTAEVLEHLFEEIKEKQSAA 275
                  9*********************9988765 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.1
    TIGR03680   4 pevniglvGhvDhGkttlvkaltGv 28 
                   e+n+++vG  + Gk++l +++ G 
  MMETSP1061-20121228|15879_1 339 EEINVAIVGRPNVGKSSLLNSIFGD 363
                  589****************999885 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0058
    TIGR03680 106 dgalLviaaneevPqpqtkehlvaleiig.iknivivqnkidlvskekalenyeeikefvkgtvae..napiiPvsalkkvnidvllealekeiptperdldkdalllvar 213
                  d alLv++a+  v     ++ + a +i    +   i+ nk d v  +     y++  ++++ ++++   api+ +sa     +  + + +++ i   ++ ++++ l  v+r
  MMETSP1061-20121228|15879_1 431 DVALLVMDATAGV---TEQDRILAQKIADdGRACAIICNKWDAVVDKD-SSTYDKSVKYIRAEMPQirWAPILFISAETGQRVGKIYSVVDEAIGAHRKRVSTSILNEVLR 537
                  8899999999999...345678888888625778999*****887654.578999999**999975327*****************9999999999888888777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                      202  (0.0492443); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.63u 0.18s 00:00:00.81 Elapsed: 00:00:00.66
# Mc/sec: 1279.89
//
Query:       MMETSP1061-20121228|15886_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.1e-144  478.2  10.1   2.5e-144  477.9   7.0    1.0  1  TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
    1.6e-07   28.7   2.1     0.0017   15.4   0.1    2.2  2  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    1.5e-05   22.3   5.7     0.0042   14.2   0.1    2.2  2  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
      2e-05   21.9   0.4       0.01   13.0   0.0    2.2  2  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
    3.7e-05   21.0   1.3      0.077   10.1   0.1    2.2  2  TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit
    0.00091   16.4   0.2     0.0024   15.0   0.0    1.8  2  TIGR00693 thiE: thiamine-phosphate pyrophosphorylase
      0.002   15.6   2.5      0.013   12.9   0.0    2.7  3  TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
      0.005   14.5   0.1      0.012   13.3   0.1    1.6  1  TIGR00419 tim: triose-phosphate isomerase
     0.0087   13.5   0.1     0.0087   13.5   0.1    2.3  3  TIGR03128 RuMP_HxlA: 3-hexulose-6-phosphate synthase
     0.0097   12.6   0.1      0.024   11.4   0.0    1.6  1  TIGR00262 trpA: tryptophan synthase, alpha subunit
  ------ inclusion threshold ------
      0.011   13.2   0.6       0.32    8.5   0.0    2.5  3  TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase


Domain annotation for each model (and alignments):
>> TIGR00343  TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  477.9   7.0  6.7e-147  2.5e-144       1     271 [.      21     290 ..      21     301 .. 0.98

  Alignments for each domain:
  == domain 1    score: 477.9 bits;  conditional E-value: 6.7e-147
    TIGR00343   1 lkkglakmlkgGvimdvvnaeqakiaeeaGavavmalervpadiraaGgvarmsdpklikeildavsipvmakvriGhiveaqvlealevdyidesevltpadetfhiekkkfkvpfvcGardlGealrriaeGaamirtkGeaGtGdvveavkhlrlikeeikklqkkleeeelaaeakelevlvellkevkkeGklpvvnfaaGGvatpadaallmqlGadGvfvGsGifksenpeklakaiveatthydepevlaevskdlGeamkGi 271
                  +k+gla+mlkgGvimdv+n+eqakiae+aGavavmaler+padir+ Ggvarm+dp+li+ei +av+ipvmak+riGh+veaq+lea e+dyidesevlt ad  +hi+k++f+vpfvcG+r+lGealrriaeGa+m+rtkGeaGtG+vveav+h r+++ +i++lq+++++e l ++akel++++el+k+v++ GklpvvnfaaGGvatpadaal+mqlG dGvfvGsGifks npe +a+aiv+atthy++p+vl++vs +lG am Gi
  MMETSP1061-20121228|15886_1  21 VKQGLAQMLKGGVIMDVMNVEQAKIAEAAGAVAVMALERIPADIRRDGGVARMTDPSLIQEIKNAVTIPVMAKARIGHFVEAQILEACEIDYIDESEVLTMADDVHHIDKTQFSVPFVCGCRNLGEALRRIAEGASMLRTKGEAGTGNVVEAVRHARQVQGDIRRLQTMSKDE-LFVAAKELRAPYELVKQVADAGKLPVVNFAAGGVATPADAALMMQLGVDGVFVGSGIFKSANPEARARAIVQATTHYKDPKVLMDVSTGLGPAMVGI 290
                  79**********************************************************************************************************************************************************************98877.9999********************************************************************************************8 PP

>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.2   2.6e-05    0.0096     149     208 ..      39     103 ..      27     113 .. 0.77
   2 !   15.4   0.1   4.7e-06    0.0017     178     225 ..     202     250 ..     158     276 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.6e-05
    TIGR00737 149 veeaariaedaGaqavalHgRTraqlye..Geanw...diiarvkqavkiPVignGDitspedAk 208
                   +e a+iae+aGa av+   R  a + +  G a++     i+++k+av+iPV++   i ++ +A+
  MMETSP1061-20121228|15886_1  39 NVEQAKIAEAAGAVAVMALERIPADIRRdgGVARMtdpSLIQEIKNAVTIPVMAKARIGHFVEAQ 103
                  467899**********999999887643326666532268**************99999888886 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 4.7e-06
    TIGR00737 178 eanwdiiarvkqavkiPV..ignGDitspedAkamLeetgadgvligRga 225
                  +a ++ +++v +a k+PV  ++ G + +p+dA  m++ + +dgv++g g 
  MMETSP1061-20121228|15886_1 202 RAPYELVKQVADAGKLPVvnFAAGGVATPADAALMMQLG-VDGVFVGSGI 250
                  5889*************96669***********999976.******9886 PP

>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   1.0   0.00025     0.092     112     170 ..      33      96 ..      17     108 .. 0.83
   2 !   14.2   0.1   1.1e-05    0.0042     151     197 ..     206     254 ..     200     273 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00025
    TIGR03151 112 viPvvasvalakrleklGadavia.e....GmeaGGhiGelttlalvpqvvdavsiPviaaGGi 170
                  vi  v  v  ak  e +Ga av+a e     +   G + ++t  +l++++ +av+iPv+a   i
  MMETSP1061-20121228|15886_1  33 VIMDVMNVEQAKIAEAAGAVAVMAlEripaDIRRDGGVARMTDPSLIQEIKNAVTIPVMAKARI 96 
                  6777889999*********99986441111455679999********************98766 PP

  == domain 2    score: 14.2 bits;  conditional E-value: 1.1e-05
    TIGR03151 151 alvpqvvdavsiPvi..aaGGiadgrGlaaalalGaeavqlGtrflvak 197
                   lv+qv+da ++Pv+  aaGG+a    +a  + lG ++v +G+  + + 
  MMETSP1061-20121228|15886_1 206 ELVKQVADAGKLPVVnfAAGGVATPADAALMMQLGVDGVFVGSGIFKSA 254
                  69************8779************************8766555 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.1    0.0019       0.7     175     211 ..      64     101 ..      14     119 .. 0.73
   2 !   13.0   0.0   2.7e-05      0.01      45     109 ..     192     253 ..     158     263 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.0019
    TIGR03572 175 iDrd.GtrkGydlelvktvskavkiPvialGGagsldd 211
                  i rd G+++  d  l++++++av+iPv+a   +g++ +
  MMETSP1061-20121228|15886_1  64 IRRDgGVARMTDPSLIQEIKNAVTIPVMAKARIGHFVE 101
                  4444245666799****************988887754 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2.7e-05
    TIGR03572  45 DELivlDidaskeerekllelieklaeevfvPlt..vgGGiksledvkkllkaGadKvsintaalen 109
                  DEL+v      ++e    +el++++a+   +P+   ++GG+ +  d+  +++ G+d v + + ++++
  MMETSP1061-20121228|15886_1 192 DELFVA-----AKELRAPYELVKQVADAGKLPVVnfAAGGVATPADAALMMQLGVDGVFVGSGIFKS 253
                  555542.....344456799************964479*********************99998875 PP

>> TIGR00735  hisF: imidazoleglycerol phosphate synthase, cyclase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00021      0.08     158     217 ..      40     102 ..      20     131 .. 0.69
   2 !   10.1   0.1   0.00021     0.077      62     111 ..     204     255 ..     167     279 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00021
    TIGR00735 158 vewakeveelGaGeil.ltsmdkdGtksG.....ydlellkkvkeavkiPviasgGaGkaehleea 217
                  ve ak +e+ Ga  ++ l+ + +d  ++G      d +l++++k+av+iPv+a + +G+   + ea
  MMETSP1061-20121228|15886_1  40 VEQAKIAEAAGAVAVMaLERIPADIRRDGgvarmTDPSLIQEIKNAVTIPVMAKARIGH---FVEA 102
                  4555556666655443244444443333322222799****************998884...4444 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00021
    TIGR00735  62 mlevvervaekvfiPlt..vgGGiksiedvkkllraGadkvsintaavkape 111
                    e+v++va+   +P++   +GG+ + +d++ +++ G d v +++   k+++
  MMETSP1061-20121228|15886_1 204 PYELVKQVADAGKLPVVnfAAGGVATPADAALMMQLGVDGVFVGSGIFKSAN 255
                  46899****999999864479**********************998887765 PP

>> TIGR00693  thiE: thiamine-phosphate pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.9   3.4e+02     135     158 ..      70      92 ..      18     113 .. 0.58
   2 !   15.0   0.0   6.6e-06    0.0024     141     196 ..     205     262 ..     181     263 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.9
    TIGR00693 135 kkavvglelleeiaakaleipvva 158
                   + +++ +l++ei++++ +ipv+a
  MMETSP1061-20121228|15886_1  70 VARMTDPSLIQEIKNAV-TIPVMA 92 
                  34445566666666555.366655 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 6.6e-06
    TIGR00693 141 lelleeiaakaleipvv..aIGGit.lenveevlkagvdgvavvsaimaaadvaaaake 196
                   el++++a++  ++pvv  a GG+  +  ++ +++ gvdgv v s i+++a+++a a++
  MMETSP1061-20121228|15886_1 205 YELVKQVADAG-KLPVVnfAAGGVAtPADAALMMQLGVDGVFVGSGIFKSANPEARARA 262
                  68999998777.588754499**9615778889999*****************998875 PP

>> TIGR00007  TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.6      0.21        79     171     221 ..       8      57 ..       1      60 [. 0.67
   2 ?    0.3   0.1      0.26        97     145     200 ..      43      98 ..      35     113 .. 0.66
   3 !   12.9   0.0   3.5e-05     0.013     179     223 ..     206     252 ..     199     258 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.21
    TIGR00007 171 GtlsGvnveltkelvkeaeveviasGGvssiedvkalkklgvkgvivGkAl 221
                  G  +G  v  t+  vk+   +++  G + ++ +v+++k ++++g++  +Al
  MMETSP1061-20121228|15886_1   8 GNGNGSAVVGTS-TVKQGLAQMLKGGVIMDVMNVEQAKIAEAAGAVAVMAL 57 
                  444444333333.33335556677888899************999987776 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.26
    TIGR00007 145 lslvelakkleelgleeiilTdiekdGtlsG.vnveltkelvkeaeveviasGGvss 200
                  ++++e+a  ++ + le  i  di +dG ++  ++ +l++e++++++++v+a   + +
  MMETSP1061-20121228|15886_1  43 AKIAEAAGAVAVMALE-RIPADIRRDGGVARmTDPSLIQEIKNAVTIPVMAKARIGH 98 
                  5555555555555444.5788999998765515778889998889998887666655 PP

  == domain 3    score: 12.9 bits;  conditional E-value: 3.5e-05
    TIGR00007 179 eltkelvke..aeveviasGGvssiedvkalkklgvkgvivGkAlye 223
                  el+k+++++    v+ +a+GGv++ +d   + +lgv+gv vG+ +++
  MMETSP1061-20121228|15886_1 206 ELVKQVADAgkLPVVNFAAGGVATPADAALMMQLGVDGVFVGSGIFK 252
                  667777776323344579*************************9987 PP

>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   3.1e-05     0.012     197     227 ..     223     253 ..     196     254 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 3.1e-05
    TIGR00419 197 yGasvtaaedaelaaqldvdGvLlasavlka 227
                    ++v++  da l++ql+vdGv ++s++ k+
  MMETSP1061-20121228|15886_1 223 AAGGVATPADAALMMQLGVDGVFVGSGIFKS 253
                  46899***********************985 PP

>> TIGR03128  RuMP_HxlA: 3-hexulose-6-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.1      0.41   1.5e+02     102     128 ..      30      52 ..      14      85 .. 0.67
   2 ?   -2.5   0.0       1.9     7e+02      73     102 ..     151     180 ..     146     202 .. 0.69
   3 !   13.5   0.1   2.3e-05    0.0087     151     205 ..     210     266 ..     196     267 .. 0.74

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.41
    TIGR03128 102 gkevlvDlinvkDkakrakelkelGvd 128
                  +  v++D++nv    ++ak ++++G+ 
  MMETSP1061-20121228|15886_1  30 KGGVIMDVMNV----EQAKIAEAAGAV 52 
                  44455566665....444444444443 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.9
    TIGR03128  73 faaGadivtvlgvaddatikeavkaAkkeg 102
                  +a Ga ++   g a++  + eav++A++ +
  MMETSP1061-20121228|15886_1 151 IAEGASMLRTKGEAGTGNVVEAVRHARQVQ 180
                  556666666666677777777777776644 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 2.3e-05
    TIGR03128 151 tllkvvkevkv.avAGGikl.dtikeviklgadvvivGsaitkAedpaeaakkikkl 205
                  +++ + k   v   AGG+ +   +  +++lg d v vGs+i k ++p+  a+ i+++
  MMETSP1061-20121228|15886_1 210 QVADAGKLPVVnFAAGGVATpADAALMMQLGVDGVFVGSGIFKSANPEARARAIVQA 266
                  44444444344456899976256778899************************9875 PP

>> TIGR00262  trpA: tryptophan synthase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   6.3e-05     0.024     187     236 ..     205     256 ..     196     271 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.3e-05
    TIGR00262 187 kelikkvkalskkPvl..vGFGiskkeqvkelkelgadgvivGsAlvkiiee 236
                  +el+k+v +  k Pv+     G++ +  +  + +lg dgv vGs + k  + 
  MMETSP1061-20121228|15886_1 205 YELVKQVADAGKLPVVnfAAGGVATPADAALMMQLGVDGVFVGSGIFKSANP 256
                  799***********9622356************************9997665 PP

>> TIGR01740  pyrF: orotidine 5'-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       3.4   1.3e+03     129     154 ..      40      65 ..      27      73 .. 0.68
   2 ?    2.5   0.0     0.056        21      71     113 ..     149     190 ..     143     223 .. 0.75
   3 ?    8.5   0.0   0.00086      0.32     186     215 ..     234     263 ..     217     264 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 3.4
    TIGR01740 129 velakeakefgldGvvcsaeeakeir 154
                  ve ak a+++g ++v++ ++  ++ir
  MMETSP1061-20121228|15886_1  40 VEQAKIAEAAGAVAVMALERIPADIR 65 
                  56667777777777766666555555 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.056
    TIGR01740  71 slikegvdmvnvhgvaGkksvealveaaseeserkllavaelt 113
                  ++i+eg++m+  +g aG + v ++v+ a++ ++ ++  +  ++
  MMETSP1061-20121228|15886_1 149 RRIAEGASMLRTKGEAGTGNVVEAVRHARQVQG-DIRRLQTMS 190
                  57899**************99999999998753.444455554 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.00086
    TIGR01740 186 eealekgadviivGRgIyaaedPkeaakki 215
                  + +++ g d + vG gI+++++P++ a++i
  MMETSP1061-20121228|15886_1 234 ALMMQLGVDGVFVGSGIFKSANPEARARAI 263
                  55677899*******************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.27u 0.17s 00:00:00.44 Elapsed: 00:00:00.42
# Mc/sec: 1052.77
//
Query:       MMETSP1061-20121228|15904_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-180  598.5   0.0   2.2e-180  598.2   0.0    1.0  1  TIGR00457 asnS: asparagine--tRNA ligase
      7e-67  224.1   0.1    1.1e-45  154.3   0.1    2.0  2  TIGR00458 aspS_arch: aspartate--tRNA ligase
    2.8e-30  103.0   0.0    1.6e-13   47.6   0.0    3.0  3  TIGR00459 aspS_bact: aspartate--tRNA ligase
    1.4e-27   94.4   0.0    4.3e-15   53.1   0.1    2.5  2  TIGR00499 lysS_bact: lysine--tRNA ligase
    4.6e-13   47.1   0.1    1.7e-09   35.4   0.0    2.7  2  TIGR00462 genX: EF-P lysine aminoacylase GenX
    3.7e-06   24.3   0.1     0.0079   13.4   0.0    3.2  3  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region


Domain annotation for each model (and alignments):
>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  598.2   0.0  3.2e-183  2.2e-180      10     455 .]      81     553 .]      73     553 .] 0.97

  Alignments for each domain:
  == domain 1    score: 598.2 bits;  conditional E-value: 3.2e-183
    TIGR00457  10 qvkkavdeevkvsgWvktkRsskkiaFlelrDGsslkalqavikke.leeeleqelkklttgssvsvsgkvvespkkkqelElkvkkievvgeaeeedyplqkkehsleflrelahLrlRtktlsAvlkvRsalskaiheyfqkegfvkvstPiltssdcEGagelFkvkt.....................egvdfskdffgkeayLtvsgqlelEalalalskvytlgptFRAEksntkRHlsEfwmiEpElaFvnledllqlieelikyiikavleeakqelkfleknvekkkikkleeiisskfaritYtdAieiLkesda..kkkfeledl.wGvdlktehErflaeeyfksPvfvtdyPkeikaFYmkqn..ddektvaavDllvPkiGEiiGGseReddldkLeerlkeegldteelkWyldlRkyGsvphsGfGlGleRlvayltglenirdaipfpRtaesikf 455
                   ++   ++ v ++gWv+t R +k +aF+e++DGs +k +q+v++ + ++e++++el k+ttg+sv+v+g +ves++ kq++E++++k+ vvge   ++ypl+kk+hsle+lr++ahLr+Rt+t+ Av++vRs+l+ aih +fq+ gf++v+tP++t+sdcEGagelF+v+t                     + vd s dffgk+ayLtvsgql +E++a a++++yt+gptFRAE+s+t+RHl+Ef m+EpE+aF++l+  ++ +e+++k+++k+vl++++++l+f+ k  +k  ik+le+++s+ f ++ Y dAi++L+e+ a   +k++++d+ +G+dl+tehEr lae+ f+s vfv +yPk+ikaFYm+ n  d+++tv+a+DllvP++GE++GGs+Re++ld+L e++ +++ld e+++WyldlR++GsvphsG+GlG+eRlv+y++g+enir+ai fpR +++++f
  MMETSP1061-20121228|15904_1  81 ATEASDGKPVLIKGWVRTVRKQKTLAFVEVNDGSNMKGIQCVLSFDsVDEDTTKELAKITTGCSVVVEGPLVESQGGKQAVEVAATKLRVVGECPGDTYPLAKKRHSLEYLRTIAHLRPRTNTIAAVARVRSQLAGAIHAFFQQSGFLYVQTPLITASDCEGAGELFRVTTldidkksslpmvktedgkgttDVVDSSLDFFGKPAYLTVSGQLGGETYASAMGDIYTFGPTFRAENSQTTRHLAEFHMVEPEMAFADLDSAMENAEQMLKFVVKHVLDNCQEDLNFFGKFYDKGLIKRLEKLVSQPFVKVSYRDAIKYLQEEIAkdPSKWQFPDVeFGTDLSTEHERWLAETKFESAVFVYNYPKSIKAFYMRDNddDNGETVNAMDLLVPGVGELVGGSQREERLDTLLEKMTDQDLDPEDYWWYLDLRRFGSVPHSGYGLGFERLVTYVCGVENIREAIAFPRYPGHAEF 553
                  456778999**********************************977589999****************************************************************************************************************************************9985569******************************************************************************************************************************986645789**********************************************644468*************************************************************************************998876 PP

>> TIGR00458  aspS_arch: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.9   0.0   2.6e-22   1.8e-19       1     177 [.      76     252 ..      76     260 .. 0.91
   2 !  154.3   0.1   1.5e-48   1.1e-45     166     422 ..     269     547 ..     259     550 .. 0.85

  Alignments for each domain:
  == domain 1    score: 67.9 bits;  conditional E-value: 2.6e-22
    TIGR00458   1 vysadikeekdgkevllrgwvheirdlGalifvllrdregl..iqilvkkkkvskelfklikklkkesvvavkGkvkekekapqgleiipeklevlneak.eplPldleekveaeldtrldarfldlrrpkvqaifkirsevlesvreflaeegfievntPklvasateGGtelfeityf 177
                  v+++d  e+ dgk vl++gwv  +r++ +l+fv + d   +  iq ++  + v+++  k   k+ +   v+v+G + e++   q++e+  +kl+v+ e++ ++ Pl  + ++   l t      l  r+ ++ a+ ++rs++  ++  f+++ gf+ v+tP + as  eG  elf +t +
  MMETSP1061-20121228|15904_1  76 VKTVDATEASDGKPVLIKGWVRTVRKQKTLAFVEVNDGSNMkgIQCVLSFDSVDEDTTKELAKITTGCSVVVEGPLVESQGGKQAVEVAATKLRVVGECPgDTYPLAKKRHSLEYLRTIA---HLRPRTNTIAAVARVRSQLAGAIHAFFQQSGFLYVQTPLITASDCEGAGELFRVTTL 252
                  5899********************************98876669*****************************************************99736789987777766666654...45679*************************************************975 PP

  == domain 2    score: 154.3 bits;  conditional E-value: 1.5e-48
    TIGR00458 166 eGGtelfe..ityfereaflaqsPqlykqvllaaglervyeiaPifraeehntkrhlnevisidiemafedhkdvldileelvvrvfedvaeklkk.........elevlevkle.vpeeklerltydeaieilrakGk.........eikdgedlsteaekllG.ekmdglyfitdfPteikPfytmP.dednPeisksfdllyrdl.eissGaqrihdydllvekikakGlePeslksyleafkyGmPPhaGwGlGaerlvmvlldlknireavlfPrd 422
                   G t++ +  + +f + a+l+ s ql      a+ +  +y  +P frae+++t+rhl+e+  ++ emaf+d + +++  e+++++v+++v +++++         + + l  +le +  ++++++ y +ai+ l+ +           +++ g dlste e+ l   k+++  f+ ++P  ik fy+   d+dn e+ ++ dll+ +  e+  G+qr    d l ek+  + l+Pe +  yl+  ++G  Ph+G+GlG erlv  + +++nirea+ fPr 
  MMETSP1061-20121228|15904_1 269 KGTTDVVDssLDFFGKPAYLTVSGQLGGETY-ASAMGDIYTFGPTFRAENSQTTRHLAEFHMVEPEMAFADLDSAMENAEQMLKFVVKHVLDNCQEdlnffgkfyD-KGLIKRLEkLVSQPFVKVSYRDAIKYLQEEIAkdpskwqfpDVEFGTDLSTEHERWLAeTKFESAVFVYNYPKSIKAFYMRDnDDDNGETVNAMDLLVPGVgELVGGSQREERLDTLLEKMTDQDLDPEDYWWYLDLRRFGSVPHSGYGLGFERLVTYVCGVENIREAIAFPRY 547
                  5667776522569*************99876.566899**********************************************************6777776532.22233454146899*********976654321111113333688999**********94589*****************99878899*********9876449*********************************************************************96 PP

>> TIGR00459  aspS_bact: aspartate--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   2.4e-16   1.6e-13      11     176 ..      82     245 ..      75     255 .. 0.82
   2 !    8.2   0.1   0.00021      0.14     210     262 ..     306     359 ..     298     374 .. 0.86
   3 !   43.4   0.0   4.8e-15   3.3e-12     440     556 ..     431     546 ..     408     552 .. 0.82

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 2.4e-16
    TIGR00459  11 kekslgkkvtlaGWverrkdlGeliFidlrDkeg..ivqvvsdkk...kealelakelrnedvvqvkgkvslreeesknrnldtgeievlaeeitvln..kskkkPleiekkeaeeevrlkyRYLdLRrpkmqqrlklRskvtkavRnflddkgFleietPiLtkatPeGard 176
                  +e s gk v ++GWv++ ++   l F+ + D ++   +q v + +   +++ + ++++++   v+v+g ++       +++   +++ev a +++v+     ++ Pl  ++++ e+  r    +L  R ++++   + Rs+++ a+  f++++gFl + tP++t +  eGa +
  MMETSP1061-20121228|15904_1  82 TEASDGKPVLIKGWVRTVRKQKTLAFVEVNDGSNmkGIQCVLSFDsvdEDTTKELAKITTGCSVVVEGPLV-------ESQGGKQAVEVAATKLRVVGecPGDTYPLAKKRHSLEYL-R-TIAHLRPRTNTIAAVARVRSQLAGAIHAFFQQSGFLYVQTPLITASDCEGAGE 245
                  5677899************************9984448877665544567777888888899999999984.......33445567999*****99983346888988776666665.5.5788999********************************************77 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00021
    TIGR00459 210 YyqiarcfRDeDlRaDRq.PeftqiDlemsFlnqedvmelveklvsevfkevkk 262
                   y     fR e++   R   ef  ++ em+F++ ++ me +e++++ v k+v +
  MMETSP1061-20121228|15904_1 306 IYTFGPTFRAENSQTTRHlAEFHMVEPEMAFADLDSAMENAEQMLKFVVKHVLD 359
                  5777778********99758****************************999865 PP

  == domain 3    score: 43.4 bits;  conditional E-value: 4.8e-15
    TIGR00459 440 eekrlvaahhpFtspkeedleklekapee..alaeayDlvlnGv.elGgGsiRihdkelqekvfeilgideeearekFgflleafeyGaPphaGlalGlDRlvmllaetdsiRdviaFPk 556
                   e ++++a  ++  pk+ ++  ++++ ++   + +a Dl + Gv el gGs R   ++l ++++e++  d++ + e + + l+   +G+ ph+G +lG++Rlv  +++ ++iR+ iaFP+
  MMETSP1061-20121228|15904_1 431 AETKFESAVFVYNYPKSIKAFYMRDNDDDngETVNAMDLLVPGVgELVGGSQRE--ERL-DTLLEKMT-DQDLDPEDYWWYLDLRRFGSVPHSGYGLGFERLVTYVCGVENIREAIAFPR 546
                  578899999999999999888887765541156799*******989*****994..444.45555553.333345689*****************************************7 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0     2e-13   1.4e-10      47     202 ..      82     238 ..      54     253 .. 0.79
   2 !   53.1   0.1   6.3e-18   4.3e-15     242     491 ..     305     546 ..     300     549 .. 0.76

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 2e-13
    TIGR00499  47 eeleekelevsiaGRikakRsmgkatFitlqdes..gklqlyvnkdklsedveeleeklldlGDiigvkGkl..kktktgelsvkveelklltka...lrplPekfhGlkdqEtryrkRylDlivnkesrqtflkRskiikaiRkfldergflEvEtPilqsi 202
                  + + +  + v i G + + R ++ ++F++++d s    +q +++ d++ ed++++  k+  +G  ++v+G l  +++ ++ + v++++l+++ ++     pl +k h l+   t      l   +n +   + ++Rs++  ai  f+++ gfl v tP++ + 
  MMETSP1061-20121228|15904_1  82 T-EASDGKPVLIKGWVRTVRKQKTLAFVEVNDGSnmKGIQCVLSFDSVDEDTTKELAKI-TTGCSVVVEGPLveSQGGKQAVEVAATKLRVVGECpgdTYPLAKKRHSLEYLRT---IAHLRPRTN-TIAAVARVRSQLAGAIHAFFQQSGFLYVQTPLITAS 238
                  3.334478899*********9999*********97667***********9999888888.9**********9666677888999999*****9994444577778887733322...334455666.7788999************************99764 PP

  == domain 2    score: 53.1 bits;  conditional E-value: 6.3e-18
    TIGR00499 242 kvyEigrvFRnEGvd.ttHnpEFttiElYqayadyedllelteellktlvkellgtlkikykeeeldlkkpvkkitmleaikkidketgislddlkdsetakalakklaievaeks...lslgkilnklfeefv.EetliqPtfiteyPaeisPLAkr..ddenpelteRFElFikgkEianaysElndpldqrerfeeqvaekeagddeasllDe.dfvealeyGlpptgGlGiGiDRlvmlltdsksirdvllFpa 491
                   +y  g +FR E  + t+H +EF ++E  +a+ad++  +e++e++lk++vk++l +++     e+l++  ++    ++ +++k+  +    + +++  ++ k l++++a++ ++ +   +  g  l +  e+ + E ++    f+++yP+ i     r  dd+n e ++  +l + g        El    + +er++  +++  ++d++    D+  +++  ++G +p +G+G+G +Rlv  ++  ++ir+ ++Fp 
  MMETSP1061-20121228|15904_1 305 DIYTFGPTFRAENSQtTRHLAEFHMVEPEMAFADLDSAMENAEQMLKFVVKHVLDNCQ-----EDLNFFGKFYDKGLIKRLEKLVSQP---FVKVSYRDAIKYLQEEIAKDPSKWQfpdVEFGTDLSTEHERWLaETKFESAVFVYNYPKSIKAFYMRdnDDDNGETVNAMDLLVPG------VGELVGGSQREERLDTLLEK--MTDQDLDPEDYwWYLDLRRFGSVPHSGYGLGFERLVTYVCGVENIREAIAFPR 546
                  68999******9876268************************************5554.....5566666776666666666554444...5678888899999999988666666334555555655566655155555599*********9876541156788999999999987......56888888888888876654..4555555556515777779********************************96 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00037      0.25       2      31 ..     209     238 ..     208     259 .. 0.87
   2 !   35.4   0.0   2.5e-12   1.7e-09      70     304 .]     300     544 ..     297     544 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00037
    TIGR00462   2 kkrakllaaiRafFaergvlEvetpllsea 31 
                  + r++l+ ai afF+++g+l v+tpl++++
  MMETSP1061-20121228|15904_1 209 RVRSQLAGAIHAFFQQSGFLYVQTPLITAS 238
                  5699*********************99865 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 2.5e-12
    TIGR00462  70 aagsgkifqlakvfRneer.grlHnpEFtmLEwYrvgadleelmeeveellqevle..........deeaeverlsyaeaferylgidplta..........sleelkeaaekageaaseeedredlldlllvekvepklgk...erptflydyPasqaaLarikkdder..vAeRfElYikglElaNgfeELtdaaeqrkRfeednaerkalgleevpldekllaaleaglpecsGvAlGlDRLlmlalgaesieevlaf 304
                  a+  g+i+ ++ +fR e++  ++H  EF+m+E   + adl++ me+ e++l++v++          +         +   f +   i+ l++           ++++k + e+  +  s+ +  +  + + l+++ e+ l++   e+ +f+y+yP+s  a    ++dd++  + + ++l +       g  EL   +++++R+++  ++ +++ l+  +    +l+  + g  + sG  lG++RL+  ++g e+i+e +af
  MMETSP1061-20121228|15904_1 300 ASAMGDIYTFGPTFRAENSqTTRHLAEFHMVEPEMAFADLDSAMENAEQMLKFVVKhvldncqedlN---------FFGKFYDKGLIKRLEKlvsqpfvkvsYRDAIKYLQEEIAKDPSKWQFPDVEFGTDLSTEHERWLAEtkfESAVFVYNYPKSIKAFYMRDNDDDNgeTVNAMDLLVP------GVGELVGGSQREERLDTLLEKMTDQDLDPEDYW-WYLDLRRFGSVPHSGYGLGFERLVTYVCGVENIREAIAF 544
                  67889**********99875899*********************************76666654442.........3333333333333333333333323333344444444445555555556667778888888877651115789*******98777655554444256666666555......568***********9998887777766654443.3455555566678*********************99886 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0     0.005       3.4      30      54 ..     213     237 ..     185     254 .. 0.85
   2 !   13.4   0.0   1.2e-05    0.0079     107     156 ..     306     360 ..     300     367 .. 0.81
   3 ?    2.0   0.0     0.035        24     202     228 ..     515     541 ..     505     547 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.005
    TIGR02367  30 klerelakalvdrGfvevkspilis 54 
                  +l   + +++++ Gf+ v++p++ +
  MMETSP1061-20121228|15904_1 213 QLAGAIHAFFQQSGFLYVQTPLITA 237
                  57778999*************9976 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.2e-05
    TIGR02367 107 ifeiGscyrke.sdGsehleeftmln....lvelGspeeerrerleelikevlee 156
                  i+  G+ +r e s+ ++hl ef m++    +++l s +e+ ++ l+ ++k+vl++
  MMETSP1061-20121228|15904_1 306 IYTFGPTFRAEnSQTTRHLAEFHMVEpemaFADLDSAMENAEQMLKFVVKHVLDN 360
                  8999*****875899*********8533337888888888888888888888876 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.035
    TIGR02367 202 vkpwvGlGfGlerllkvredtknvrsa 228
                  + p  G G+G+erl+    +++n+r+a
  MMETSP1061-20121228|15904_1 515 SVPHSGYGLGFERLVTYVCGVENIREA 541
                  45899************99***99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 2146.76
//
Query:       MMETSP1061-20121228|15907_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-44  146.6   0.0    1.2e-43  146.3   0.0    1.1  1  TIGR00079 pept_deformyl: peptide deformylase


Domain annotation for each model (and alignments):
>> TIGR00079  pept_deformyl: peptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3   0.0     3e-47   1.2e-43       3     157 ..      90     248 ..      88     252 .. 0.93

  Alignments for each domain:
  == domain 1    score: 146.3 bits;  conditional E-value: 3e-47
    TIGR00079   3 evvtypddalreiakpvekvdd..kiekllddmietmiaeeGiGlAApQvgikkrllvvdledek..kekklvliNPkiiekseeksvleEGCLSvpevkgdviRaekvkikaldregkeitleakgllaiviQHEiDHLnGvlfvdkisklkreklkk 157
                  ++v+yp++ lr  + +v+  d+  +i kl+++m++ m+a+eG+GlAApQvg++krl+v + + ++    ++ +l+NP+i+e s  k    EGCLS+p+++g+viR++++k++al+ +g++i+ ++kg  a+++QHE DHL+G +++d++s++ +ek++ 
  MMETSP1061-20121228|15907_1  90 RIVKYPHPSLRAENAEVSLPDEqeSITKLAKEMLKVMYAAEGVGLAAPQVGVNKRLMVYNPSGDSkrWLEETMLVNPRIVEYSDAKDEEIEGCLSFPDMQGEVIRSKWIKVEALTPKGRKIKKKFKGWEARIFQHEYDHLDGTVYTDRLSEETKEKVQP 248
                  79***************9987522699*********************************999884456999*********999999888************************************************************999888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1659.29
//
Query:       MMETSP1061-20121228|15926_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-95  316.6   4.5    8.1e-95  315.3   3.1    1.6  1  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
    2.1e-83  277.4   1.0    6.2e-83  275.9   0.1    2.2  2  TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
    2.2e-71  238.5   4.7    3.7e-69  231.2   0.5    2.6  2  TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS
      3e-38  129.8   0.4    6.5e-37  125.4   0.0    2.2  2  TIGR02392 rpoH_proteo: alternative sigma factor RpoH
    1.5e-34  116.9   0.4    3.1e-34  115.8   0.0    1.7  2  TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
    1.3e-32  111.1   1.6    7.3e-32  108.7   0.1    2.2  2  TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
    2.6e-28   96.9   0.0    1.2e-13   48.9   0.0    2.5  2  TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor
    2.6e-28   97.1   0.5    4.6e-27   93.0   0.0    2.3  2  TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
      5e-25   86.5   0.1    2.6e-23   80.9   0.0    2.5  2  TIGR02885 spore_sigF: RNA polymerase sigma-F factor
    1.2e-22   78.3   0.1    1.5e-12   45.3   0.0    2.7  3  TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor
    1.2e-19   68.6   0.1    3.5e-19   67.1   0.0    1.8  1  TIGR02850 spore_sigG: RNA polymerase sigma-G factor
    2.7e-17   60.9   0.0    5.4e-17   59.9   0.0    1.5  1  TIGR02941 Sigma_B: RNA polymerase sigma-B factor
    1.8e-05   22.1   0.0    9.8e-05   19.7   0.0    2.1  2  TIGR02859 spore_sigH: RNA polymerase sigma-H factor
    0.00049   17.6   0.3     0.0084   13.5   0.0    2.4  2  TIGR02984 Sig-70_plancto1: RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1
     0.0013   16.5   0.0     0.0046   14.7   0.0    1.9  2  TIGR02952 Sig70_famx2: RNA polymerase sigma-70 factor, TIGR02952 family


Domain annotation for each model (and alignments):
>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  315.3   3.1     3e-97   8.1e-95       1     298 []     116     429 ..     116     429 .. 0.93

  Alignments for each domain:
  == domain 1    score: 315.3 bits;  conditional E-value: 3e-97
    TIGR02997   1 Dlvrlylqeigrvplltaeeeielarqvqellaleekkeeleeqlekepskeelakav..dlsekelkkalkqgrrAkeklikanLRLvvsvAkkYqkrglellDLiqeGslGleravekFdptkGykfstyAyWWirqgitraiaeqsrtiRlPiHiteklnklkkvqrelsqklgrepseaelaealeleveqvrellkaarkpvsLdak.....v.Gk........eedtelgdlledeeeePeeeveeellkedleellaeLkererevlrlrfGledeeeltlaeigeelnlsrervrqiekkalkklr 298
                  D++++y++++   +ll+++eei lar++q ll+ e+++e+lee+l + p+ +e+a++v  ++++ elkk+++++ rAk+ l ++n+RLvvs+ k+Yq+rg+ + DL qeG lGl+ra ekFdp++G++fstyA+WWi+q+i raia+q rtiRlP+Hi ++l+ l+k++rel ++lgr ++++e++e+ +++ ++++ l ++++++vs++++     v G+         +  ++gd++ d +++P ++ + ++lk+dl++l+ +L++re++v+r+rfGl+d++++tl+eig++++++rer+rqie++al+klr
  MMETSP1061-20121228|15926_1 116 DSMKHYIKSMCNHELLNKNEEIILAREIQILLKWEKQREKLEEELLRPPTYAEWATSVraNMTVPELKKQIRRSLRAKTALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQLSALRKAERELRSDLGRPATTSEVTERTGFTSDRIDFLNRVSQQSVSMEQEltsskVkGSgagmggagGNSLTIGDMMGDPDQKPVDQASYQMLKDDLSRLICTLNSREQAVIRMRFGLDDGRPKTLEEIGKRFSVTRERIRQIEARALHKLR 429
                  8899***************************************************9862368889************************************************************************************************************************************************98622222343211222221245689******************************************************************************8 PP

>> TIGR02393  RpoD_Cterm: RNA polymerase sigma factor RpoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.4   3.8e+02     159     188 ..     111     141 ..      55     174 .. 0.64
   2 !  275.9   0.1   2.3e-85   6.2e-83       1     237 [.     192     441 ..     192     442 .. 0.93

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.4
    TIGR02393 159 daaakellkeeleevle.tlsereekvlklr 188
                   ++ + ++k+ ++++ + +l +++e+++  r
  MMETSP1061-20121228|15926_1 111 RETGTDSMKHYIKSMCNhELLNKNEEIILAR 141
                  3344444444444444443333333332222 PP

  == domain 2    score: 275.9 bits;  conditional E-value: 2.3e-85
    TIGR02393   1 akkklvesnlrlvvsiakkylnrGlsfldliqeGniGllkavekfdykkgykfstyatWWirqaitraiadqartiriPvhlvetinklakaerkllqelgrepteeelaeklgleaekvkeikklakepvslekpige..............eedselgdfiedeevespedaaakellkeeleevletlsereekvlklryGledgkektleevgkefnvtrerirqieskalrklrhpskskklkdfl 237
                  ak+ l esn+rlvvsi+k+y+nrG+ f+dl qeG +Gl +a ekfd ++g++fstyatWWi+q+i raiadq rtir+Pvh+ ++++ l kaer+l  +lgr +t+ e++e+ g++ +++  ++++++++vs+e+++ +               +  ++gd++ d + ++p d+a++++lk++l++++ tl+ re++v+++r+Gl+dg++ktlee+gk+f+vtrerirqie++al+klr+p +++ +k ++
  MMETSP1061-20121228|15926_1 192 AKTALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQLSALRKAERELRSDLGRPATTSEVTERTGFTSDRIDFLNRVSQQSVSMEQELTSskvkgsgagmggagGNSLTIGDMMGDPD-QKPVDQASYQMLKDDLSRLICTLNSREQAVIRMRFGLDDGRPKTLEEIGKRFSVTRERIRQIEARALHKLRQPYRNHAVKCYV 441
                  7899**********************************************************************************************************************************98765222222333333323445789**99977.78****************************************************************************99987 PP

>> TIGR02394  rpoS_proteo: RNA polymerase sigma factor RpoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.1    0.0013      0.35       5      41 ..     108     144 ..     104     162 .. 0.81
   2 !  231.2   0.5   1.4e-71   3.7e-69      43     279 ..     188     437 ..     171     440 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0013
    TIGR02394   5 aeaeekaadaiqlylreiglkplltaeeelalarral 41 
                  a+ +e+ +d++++y++ + ++ ll+++ee+ lar  +
  MMETSP1061-20121228|15926_1 108 AKVRETGTDSMKHYIKSMCNHELLNKNEEIILAREIQ 144
                  56677889*************************9865 PP

  == domain 2    score: 231.2 bits;  conditional E-value: 1.4e-71
    TIGR02394  43 GdvearkkmiesnlrlvvkiakkyvnrGlplldlieeGnlGllkavekfdPerGfrfstyatWWirqtieraimnqartirlPvhvvkelnvvlraarklekkldreasveevaelldkpvedvskllklnekiasldapldedsek............s..lldlladekseePeelvqnedlkelieallaelnekerevlarrfGlreyekatleevakelgltrervrqiqvealkklkrileregv 279
                     +a+ ++ esn+rlvv+i+k+y nrG+++ dl +eG lGl +a ekfdPerGfrfstyatWWi+q+i rai +q rtirlPvh+  +l  + +a+r+l + l+r+a++ ev+e ++ + + +  l ++ ++ +s+++ l + + k            s  + d++  + +++P ++ + + lk+ +++l+  ln +e+ v+  rfGl +  ++tlee++k+  +trer+rqi   al+kl++  ++++v
  MMETSP1061-20121228|15926_1 188 RSLRAKTALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQLSALRKAERELRSDLGRPATTSEVTERTGFTSDRIDFLNRVSQQSVSMEQELTSSKVKgsgagmggaggnSltIGDMMG-DPDQKPVDQASYQMLKDDLSRLICTLNSREQAVIRMRFGLDDGRPKTLEEIGKRFSVTRERIRQIEARALHKLRQPYRNHAV 437
                  4568999************************************************************************************************************************************99876543212211221111211445555.567899********************************************************************98777665 PP

>> TIGR02392  rpoH_proteo: alternative sigma factor RpoH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.1     0.087        24       2      29 ..     117     144 ..     116     153 .. 0.91
   2 !  125.4   0.0   2.4e-39   6.5e-37      32     266 ..     188     430 ..     178     434 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.087
    TIGR02392   2 sleaYiravnklplLeaeeekelakrlr 29 
                  s+++Yi+++ + +lL+++ee  la++++
  MMETSP1061-20121228|15926_1 117 SMKHYIKSMCNHELLNKNEEIILAREIQ 144
                  789*********************9865 PP

  == domain 2    score: 125.4 bits;  conditional E-value: 2.4e-39
    TIGR02392  32 kdleaakkLvlshLrlvvkiargYrgYGLpqadliqegniGLmkavkrfdPergvRlvsfavhWikaeiheyilrnWrlvkvattkaqrkLFFnlrkakkklkgal.seeeveavaeeLgvseeevlemesRlsgkDlsleaeseededese........elieyLadkeseaeeeleeeeeeekqkeklkealekldersrriieaRwlede..kltLeelaaeygvsaeRvRqiekkalkklka 266
                  + l a ++L  s++rlvv+i+++Y+  G+   dl qeg +GL +a  +fdPerg+R++++a +Wik +i   i  + r +++      +     lrka+++l+++l ++   ++v e+ g ++ + ++  +R+s + +s+e+e ++++ ++             ++ d   +++++  ++++ +  k+ l++ + +l++r++ +i+ R   d+  ++tLee+ ++++v +eR+Rqie++al+kl++
  MMETSP1061-20121228|15926_1 188 RSLRAKTALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQ--LSALRKAERELRSDLgRPATTSEVTERTGFTS-DRIDFLNRVSQQSVSMEQELTSSKVKGSgagmggagGNSLTIGDMMGDPDQKPVDQASYQMLKDDLSRLICTLNSREQAVIRMRFGLDDgrPKTLEEIGKRFSVTRERIRQIEARALHKLRQ 430
                  67889999*************************************************************************99865543..5689**99999988724566677777777665.566778899999***99999887766544555665455667789999*************************************86655479****************************97 PP

>> TIGR02937  sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       2.8   7.6e+02      41      47 ..     151     157 ..     103     186 .. 0.57
   2 !  115.8   0.0   1.1e-36   3.1e-34       4     163 ..     194     430 ..     191     432 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 2.8
    TIGR02937  41 kaldkfd 47 
                  k  +k +
  MMETSP1061-20121228|15926_1 151 KQREKLE 157
                  2223333 PP

  == domain 2    score: 115.8 bits;  conditional E-value: 1.1e-36
    TIGR02937   4 eqliesylplvykvarkylgdsldaeDlvqegflglikaldkfdpessfk..tyaysvirnsiidalrrkrelkvtneveiske...........................keeeeledeed......................................................rpeeqeeaeelrerleqalekLperereilklry....leglslkeiAeelgisqetvsrilkraikkLkk 163
                    l es+ +lv+++ ++y ++++ ++Dl qeg+lgl +a++kfdpe++f+  tya+++i++si +a+ ++  ++++++v+i++                                                                                             +p +q+  + l+++l+  + +L+ re+ ++++r+       ++l+ei++++ +++e++++i++ra+ kL++
  MMETSP1061-20121228|15926_1 194 TALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRfsTYATWWIKQSIMRAIADQG-RTIRLPVHIHDQlsalrkaerelrsdlgrpattsevterT---------GftsdridflnrvsqqsvsmeqeltsskvkgsgagmggaggnsltigdmmgdpdqKPVDQASYQMLKDDLSRLICTLNSREQAVIRMRFglddGRPKTLEEIGKRFSVTRERIRQIEARALHKLRQ 430
                  67899*****************************************777777****************887.999******8776666666666655555555555555550.........0555555555555556666666666777788888888888888888888889999**********************************65555699***************************98 PP

>> TIGR02980  SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.19        52      82     117 ..     140     174 ..     130     186 .. 0.80
   2 !  108.7   0.1   2.7e-34   7.3e-32       3     224 ..     191     430 ..     189     433 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.19
    TIGR02980  82 pRrlkelaakikkateeLtqklgrePtveeiaeele 117
                  +R+++    k +k++e+L ++l r Pt +e a  ++
  MMETSP1061-20121228|15926_1 140 AREIQI-LLKWEKQREKLEEELLRPPTYAEWATSVR 174
                  555554.4678999****************998765 PP

  == domain 2    score: 108.7 bits;  conditional E-value: 2.7e-34
    TIGR02980   3 eareklvelnlkLvesiarrfrsrgeeleDlvQvgtiGLlkaidrfdlsrgvkFstyavPtivGEikrflRDktwavrvpRrlkelaakikkateeLtqklgrePtveeiaeelevseeev.......vealeaaksysassldasve...dddgdeialldtlgeedeeleeveeklalke....llakLdererrilllrffed....ktQseiaeelGiSQmqvSRlekralkklre 224
                  +a++ l e n +Lv si +r+++rg +++Dl Q g +GL +a ++fd++rg +Fstya   i   i r + D+++++r+p ++++  + ++ka+ eL + lgr  t++e+ e+ + +++ +        + ++++++ ++s ++ s        g++ ++ d++g+ d++  +  + ++lk+    l+ +L++re+ ++ +rf  d    kt +ei+++  +   ++  +e+ral+klr+
  MMETSP1061-20121228|15926_1 191 RAKTALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQLSALRKAERELRSDLGRPATTSEVTERTGFTSDRIdflnrvsQQSVSMEQELTSSKVKGSGAgmgGAGGNSLTIGDMMGDPDQKPVDQASYQMLKDdlsrLICTLNSREQAVIRMRFGLDdgrpKTLEEIGKRFSVTRERIRQIEARALHKLRQ 430
                  57889****************************************************************************************************************99982222211233444455555555544332224567899********9998766666666655111167789************7543444899**************************8 PP

>> TIGR02846  spore_sigmaK: RNA polymerase sigma-K factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.9   0.0   4.5e-16   1.2e-13      47     132 ..     190     276 ..     176     287 .. 0.88
   2 !   45.3   0.0   5.9e-15   1.6e-12     139     225 ..     345     431 ..     338     433 .. 0.95

  Alignments for each domain:
  == domain 1    score: 48.9 bits;  conditional E-value: 4.5e-16
    TIGR02846  47 eearnvliernlrlvahivkkfentgkdvddlisiGtiGlikaidsfdtekGtklatyaarcieneilmllralkkt.kgevslqdp 132
                   +a+  l e n+rlv  i k+++n g + +dl   G +Gl +a + fd+e+G +++tya+  i+  i+  +  + +t +  v+++d 
  MMETSP1061-20121228|15926_1 190 LRAKTALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTiRLPVHIHDQ 276
                  579****************************************************************99998775542667777775 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 5.9e-15
    TIGR02846 139 GneislldilssdedsvleavekklevkklkkklkvlkerekevielryGlkdgeektqreiakklgisrsyvsriekkalkkllke 225
                  Gn +++ d+++  +++ +++ + ++  ++l + + +l++re++vi++r+Gl dg+ kt  ei k ++++r  + +ie +al+kl + 
  MMETSP1061-20121228|15926_1 345 GNSLTIGDMMGDPDQKPVDQASYQMLKDDLSRLICTLNSREQAVIRMRFGLDDGRPKTLEEIGKRFSVTRERIRQIEARALHKLRQP 431
                  999*********999********************************************************************9875 PP

>> TIGR02479  FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.1      0.12        32      84     118 ..     148     184 ..     137     200 .. 0.77
   2 !   93.0   0.0   1.7e-29   4.6e-27      20     221 ..     212     430 ..     197     433 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.12
    TIGR02479  84 kleeaieelearlgrepteeeiaeel..gldlkevrk 118
                  k e+++e+le++l r pt +e a+++  ++++ e++k
  MMETSP1061-20121228|15926_1 148 KWEKQREKLEEELLRPPTYAEWATSVraNMTVPELKK 184
                  678999***************9987622556666554 PP

  == domain 2    score: 93.0 bits;  conditional E-value: 1.7e-29
    TIGR02479  20 lpssveleDliqaGmlgLldaierydeekgvkFetyavlRirGail....DeLRkldwvprslrkkakkleeaieelearlgrepteeeiaeelgldlkevrkaleeinaeslvsldellesedee.............lsladliedkksedpeeelereelkeklaeaiekLsereklvlsLyYeee....LnlkEigevLelsesRvsQlhskalkkLra 221
                    + + ++Dl q G+lgL  a e++d+e+g++F+tya+ +i+ +i+    D+ R +  +p + +++ + l++a +el+  lgr +t +e++e +g + + +   l+ ++++s vs+++ l s++ +             l++ d++ d ++ +p +++  ++lk+ l++ i +L+ re+ v+ + +  +     +l Eig+ + ++  R+ Q+  +al kLr+
  MMETSP1061-20121228|15926_1 212 QNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMraiaDQGRTI-RLPVHIHDQLSALRKAERELRSDLGRPATTSEVTERTGFTSDRIDF-LNRVSQQS-VSMEQELTSSKVKgsgagmggaggnsLTIGDMMGDPDQ-KPVDQASYQMLKDDLSRLICTLNSREQAVIRMRFGLDdgrpKTLEEIGKRFSVTRERIRQIEARALHKLRQ 430
                  45678899**********************************98761111444444.5788999*********************************999865.55555555.56665555555444899999999876556666666665.999*******************************744233379***************************8 PP

>> TIGR02885  spore_sigF: RNA polymerase sigma-F factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.062        17      89     123 ..     140     173 ..     128     183 .. 0.77
   2 !   80.9   0.0   9.3e-26   2.6e-23      11     229 ..     191     430 ..     181     432 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.062
    TIGR02885  89 srslkelakkirkekeelakklerePtieelaeal 123
                  +r ++ l  k  k++e+l ++l r Pt +e a  +
  MMETSP1061-20121228|15926_1 140 AREIQIL-LKWEKQREKLEEELLRPPTYAEWATSV 173
                  5555443.57899****************988765 PP

  == domain 2    score: 80.9 bits;  conditional E-value: 9.3e-26
    TIGR02885  11 eardklveenlrlvssivkrflnrGyeledlfqiGciGlvkaidkfdlsydvkfstyavPliiGeikrflrddg.iikvsrslkelakkirkekeelakklerePtieelaealglekeev....vaalesakslqslydtvhedd........gdpillldkiadegeeesdllekia....lkealkkldererqiillryfkd....ktqtevakilGisqvqvsrlekkvlkklke 229
                  +a+  l e+n+rlv+si+kr+ nrG+  +dl q G +Gl +a +kfd +   +fstya   i   i r + d g +i++   + +  + +rk   el ++l+r  t  e++e++g++ + +     ++++s++  q l  +  +          g+ +++ d++ d  ++  d          l + +  l++re+ +i +r+  d    kt  e+ k++ +++ ++ ++e ++l+kl++
  MMETSP1061-20121228|15926_1 191 RAKTALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGrTIRLPVHIHDQLSALRKAERELRSDLGRPATTSEVTERTGFTSDRIdflnRVSQQSVSMEQELTSSKVKGSgagmggagGNSLTIGDMMGDPDQKPVDQASYQMlkddLSRLICTLNSREQAVIRMRFGLDdgrpKTLEEIGKRFSVTRERIRQIEARALHKLRQ 430
                  678899******************************************************************98569*****************************************9993322245566666666666555443122222226789999***998776555554444001155677789************7553444899************************996 PP

>> TIGR02835  spore_sigmaE: RNA polymerase sigma-E factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0         1   2.7e+02     151     187 ..     110     146 ..     105     161 .. 0.82
   2 !   45.3   0.0   5.4e-15   1.5e-12      51     138 ..     190     278 ..     157     304 .. 0.83
   3 !   29.9   0.0   2.8e-10   7.5e-08     143     228 ..     345     430 ..     341     435 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1
    TIGR02835 151 vlgtdsdivykeleeevdrellkkalkklndrekkil 187
                  v  t +d + ++++   ++ell+k  + +  re +il
  MMETSP1061-20121228|15926_1 110 VRETGTDSMKHYIKSMCNHELLNKNEEIILAREIQIL 146
                  5568889999999999999999999999999999886 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 5.4e-15
    TIGR02835  51 eavksiliernlrlvvyiarkfentginiedlvsigtiglikavntfdpekkiklatyasrcieneilmylrrnnk.irsevsfdepln 138
                    +k+ l e n+rlvv i+++++n g+  +dl   g +gl +a + fdpe+  +++tya+  i++ i+  +  + + ir+ v +++ l 
  MMETSP1061-20121228|15926_1 190 LRAKTALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRtIRLPVHIHDQLS 278
                  468999***********************************************************999877655442567776666665 PP

  == domain 3    score: 29.9 bits;  conditional E-value: 2.8e-10
    TIGR02835 143 gnelllsdvlgtdsdivykeleeevdrellkkalkklndrekkilelrfgladgeektqkevadllgisqsyisrlekrilkrlkk 228
                  gn l + d++g  ++   ++   ++ ++ l + +  ln+re+ ++++rfgl dg+ kt  e+   + +++  i ++e r l++l++
  MMETSP1061-20121228|15926_1 345 GNSLTIGDMMGDPDQKPVDQASYQMLKDDLSRLICTLNSREQAVIRMRFGLDDGRPKTLEEIGKRFSVTRERIRQIEARALHKLRQ 430
                  99*********9999999999999999999999**************************************************996 PP

>> TIGR02850  spore_sigG: RNA polymerase sigma-G factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   1.3e-21   3.5e-19      32     252 ..     189     430 ..     171     432 .. 0.81

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 1.3e-21
    TIGR02850  32 dkeareklingnlrlvlsviqrfnnrgeyvddlfqvgcigllksidnfdlsqnvkfstyavpmiigeirrylrdn.npirvsrslrdiaykalqvrdklvskkskeptvseiakelevpkeevvfaldaiqdpvslfepiynd............ggdpiyvmdqisdeknkdeswleeialkealkr....lnereklilklrff..eg..ktqmevaeeigisqaqvsrlekaalkqlkk 252
                    +a+  l ++n+rlv+s+ +r++nrg   +dl q g +gl ++ ++fd ++  +fstya   i   i r + d+  +ir+   + d      +   +l s+  +  t+se+++  + +++ + f     q+ vs+ + +               gg+++ + d + d  +k  +      lk+ l+r    ln re+ ++++rf   +g  kt  e+ +   +++ ++ ++e  al++l++
  MMETSP1061-20121228|15926_1 189 SLRAKTALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQgRTIRLPVHIHDQLSALRKAERELRSDLGRPATTSEVTERTGFTSDRIDFLNRVSQQSVSMEQELTSSkvkgsgagmggaGGNSLTIGDMMGDPDQKPVDQASYQMLKDDLSRlictLNSREQAVIRMRFGldDGrpKTLEEIGKRFSVTRERIRQIEARALHKLRQ 430
                  4689999*****************************************************************997368*********76555556667889999999******************99999*****98766532122222222222789999*9**9988777666666666777776633337************5334533677788888889999999999999999875 PP

>> TIGR02941  Sigma_B: RNA polymerase sigma-B factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0     2e-19   5.4e-17      30     251 ..     192     430 ..     172     434 .. 0.81

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 2e-19
    TIGR02941  30 aqeklvkkykdlvesiaykyskgsaihedlvqvGmvGllgairrydlsigkafeafaiptiiGeikrylrdktwsvhvprrikelGpkikkavdeltaelqrspkiaeiadrlgvseeev..l.....eimemgqsykalsvddkie..adsdGstvalldlvGesedg.ydqtekrlv...lekilpilserekeiiecifien....lsqketGerlGisqmhvsrlkrraikklke 251
                  a+  l +    lv si+++y   +   +dl q G++Gl  a +++d+  g +f ++a   i   i r + d+  ++ +p  i +  + ++ka  el ++l r  + +e+++r g + + +  l     + + m+q+   + v  +        G ++++ d++G+ +++  dq+  +++   l +++  l+ re+ +i++ f  +     +  e G+r+ +++  + +++ ra++kl++
  MMETSP1061-20121228|15926_1 192 AKTALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVHIHDQLSALRKAERELRSDLGRPATTSEVTERTGFTSDRIdfLnrvsqQSVSMEQELTSSKVKGSGAgmGGAGGNSLTIGDMMGDPDQKpVDQASYQMLkddLSRLICTLNSREQAVIRMRFGLDdgrpKTLEEIGKRFSVTRERIRQIEARALHKLRQ 430
                  55667777789*****************************************************************************************************99887754224111113456666666666665433113467899*********9987478888888833334467889***********96541111344678889999999*************98 PP

>> TIGR02859  spore_sigH: RNA polymerase sigma-H factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   3.6e-07   9.8e-05      19     100 ..     191     272 ..     175     289 .. 0.87
   2 ?   -1.0   0.0      0.82   2.2e+02     132     185 ..     359     384 ..     349     399 .. 0.58

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 3.6e-07
    TIGR02859  19 kaleyliekyknfvkakarsyflvgadkediiqegmiglykairdykedklssfkafaelcvtrqiitaiktatrqkhipln 100
                  +a+  l e   ++v + ++ y   g   +d+ qeg++gl +a   +++++   f ++a   + + i+ ai    r   +p+ 
  MMETSP1061-20121228|15926_1 191 RAKTALTESNIRLVVSITKRYQNRGMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMRAIADQGRTIRLPVH 272
                  56677778888899999999**************************************************999998888875 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.82
    TIGR02859 132 eliiskeelakieskleellselelkvlvlyldgksyqeiaedlnrhvksidna 185
                  +  + +                             syq +  dl r + +++  
  MMETSP1061-20121228|15926_1 359 QKPVDQ----------------------------ASYQMLKDDLSRLICTLNSR 384
                  444445............................55555555555554444443 PP

>> TIGR02984  Sig-70_plancto1: RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.1      0.13        36      27     100 ..     206     276 ..     194     324 .. 0.68
   2 !   13.5   0.0   3.1e-05    0.0084     106     186 ..     346     430 ..     312     433 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.13
    TIGR02984  27 qldarlrrr.vdpsDvvQealleAhrrldefrgkteeefaaWLRkilankladalrrhllaqkRdirrEqsleaa 100
                   + +r+++r +   D+ Qe +l  +r+ ++f  +    f ++    +++ +++     +  q R ir  +++  +
  MMETSP1061-20121228|15926_1 206 SITKRYQNRgMAFQDLAQEGILGLTRACEKFDPERGFRFSTYATWWIKQSIMR----AIADQGRTIRLPVHIHDQ 276
                  56677777657889999999999999999997776666665444444444433....333445555555555554 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 3.1e-05
    TIGR02984 106 ssvrleallaaeessPseeaarrEaavrlaealakLpedqrevillrhl....eglslaevaerldkseaavsklylRalkrLre 186
                   s ++  ++ ++++ P+++a+ +   + l++ +  L+ +++ vi++r+         l+e+++r+ ++++ +++   Ral++Lr+
  MMETSP1061-20121228|15926_1 346 NSLTIGDMMGDPDQKPVDQASYQMLKDDLSRLICTLNSREQAVIRMRFGlddgRPKTLEEIGKRFSVTRERIRQIEARALHKLRQ 430
                  566677889999***********************************85221133689**************************8 PP

>> TIGR02952  Sig70_famx2: RNA polymerase sigma-70 factor, TIGR02952 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       4.2   1.2e+03     125     153 ..      40      69 ..      26      73 .. 0.73
   2 !   14.7   0.0   1.7e-05    0.0046      99     168 ..     357     430 ..     347     431 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 4.2
    TIGR02952 125 pkqqeviaLrFaqnLkiaeva.rilgkteg 153
                  ++ q++++    ++  +ae+   +l k++ 
  MMETSP1061-20121228|15926_1  40 QQSQHILSSSVVNEFDVAETElSLLKKKSK 69 
                  467899999999999999886245666655 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.7e-05
    TIGR02952  99 aepsPeeavlkelaneklleavkkLtpkqqeviaLrFaqn....LkiaevarilgktegavkalqfravkkLkr 168
                   +++P++ +  ++ +++l + +  L+ ++q vi +rF+ +       +e+ + +  t + ++++ +ra++kL++
  MMETSP1061-20121228|15926_1 357 PDQKPVDQASYQMLKDDLSRLICTLNSREQAVIRMRFGLDdgrpKTLEEIGKRFSVTRERIRQIEARALHKLRQ 430
                  4789*********************************97633334689***********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.45
# Mc/sec: 1305.23
//
Query:       MMETSP1061-20121228|15947_1  [L=1211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.12s 00:00:00.63 Elapsed: 00:00:00.45
# Mc/sec: 3551.97
//
Query:       MMETSP1061-20121228|15958_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.5   0.0      0.049   11.3   0.0    1.6  1  TIGR03653 arch_L6P: archaeal ribosomal protein L6P


Domain annotation for each model (and alignments):
>> TIGR03653  arch_L6P: archaeal ribosomal protein L6P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.2e-05     0.049      22      78 ..     175     231 ..     160     236 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.2e-05
    TIGR03653  22 kgpkgeverelkypkieisveddkvvletekarkkekalvgtykshiknmikGvteg 78 
                  k +kg ++r ++ ++ + ++++d++vle + a++k+ + ++ty+sh++  ++  +e 
  MMETSP1061-20121228|15958_1 175 KEKKGAMRRWFSEKRTKWALQNDNLVLEETPAEAKKFSDMKTYASHLEVCVRILSED 231
                  678999*****************************************9887766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.25
# Mc/sec: 2829.85
//
Query:       MMETSP1061-20121228|15957_1  [L=1371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-09   34.0 117.1    1.4e-08   30.8  34.8    3.9  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    4.8e-08   29.0  44.0    4.8e-08   29.0  30.5    3.4  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8  34.8   6.8e-12   1.4e-08     239     463 ..     169     403 ..     145     420 .. 0.34
   2 !   11.4  24.2   5.1e-06      0.01     704     976 ..     442     665 ..     428     693 .. 0.40
   3 ?   -3.0   1.7      0.11   2.2e+02     330     356 ..     730     756 ..     708     771 .. 0.38
   4 !   12.2   4.0   2.7e-06    0.0056     673     794 ..    1048    1169 ..    1012    1230 .. 0.51

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 6.8e-12
    TIGR02168 239 eeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleele..........eeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerlee 463
                  e  ++le++++e++ e+++ ++el+++++e +e  +++++le++l++++++    k+  ++ e+e +++ ++ ++  + ++++e+  ++l+++++e++ + +el++++++ + +l++++a+l+ +e+el++  +++e++           +e  +l+++va+l++++++l+ + ++le ++e+l+  +e+l +e+e+le++lee++ + ++  +elee+++ lee++++ e   +
  MMETSP1061-20121228|15957_1 169 EATSALEQQVQELKAEVRSVQEELSRSQAETAEQTNQVKNLEKDLKAAKAASTPKKQVPQTPESEANEAAASDAEIAQLQKQVEDLSRQLDESQKESKLAHDELQTKFQQSEVNLAAAKAQLTGLEEELANRDREAEDQAqsrtseanhyKERAKLQADVASLNRRVEQLELDKQELEHNVEDLALDKEQLAEEKEALEDRLEEIKLDYETATMELEETKMVLEEARTRIEVNAA 403
                  3333333333333333333333333333333333333333333333333333333333333333333333333222222222222222222222222222333333333333333333333333222222222222222200000000003333333334444444444444444444444444444444444444444444444444444444444444444444333333333 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 5.1e-06
    TIGR02168 704 elekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeel 976
                  +l+ ++ +++e+l  lr+++  ++ +l+++  ++e++ +e+  l+ ++++l+++++elee++  l++++e+ +    + e  +e+l++++  l+eel+++ + ++e+e++++ + e  + ++e+l+ +++++++ e+ +++lee+i+ ++++ e+ ++ +++++++ e+l                                          ++e ++l e ++  e +++ l  + ++ ++r+++ +++ +e+ +++ +   +  +++e ++
  MMETSP1061-20121228|15957_1 442 NLSIQNARMREALIRLREQSSIEKMDLTRQLRSAEKFVEEASDLATQVESLRETNKELEEQILDLKDMVEQGS----AYEIMVEDLSDRVLSLEEELSSSLQIIREMEEAAEITAEMEEVQAEELKAVNRDMEDRETLIRNLEEAIKMQRKREEDFQRTVSNYRKSVETL------------------------------------------KQEKSALYELHQGGEGEKSDLASTSQKALARAAQLVQDAAEMRKREAQ---AAVDRIESQV 665
                  2233333333333333333333333444444444444444444444444444444444444444444443332....444444444444444444444444444444444443333333344444444444444444444444444444444444444444444444444..........................................444444444444444444444444444444444444444443333333...1122222222 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 0.11
    TIGR02168 330 skkeeleeelaeleeeleelkeelesl 356
                  +++ee+eee ++ ee++ el+ + ++l
  MMETSP1061-20121228|15957_1 730 ADSEEKEEEEETEEEKILELTDDQQQL 756
                  111111111111111111111111111 PP

  == domain 4    score: 12.2 bits;  conditional E-value: 2.7e-06
    TIGR02168  673 silerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeie 794 
                   + l r k+ie++ e+  e   +++ +++++++lek+l    +e++  +++l +le+ l++ +++ ++    +++ +e++++l++e+  l+e +  l++++ee e+e+ + +++  + +++ +
  MMETSP1061-20121228|15957_1 1048 NYLVRAKSIENNLEDAVESVPELSLANAKVASLEKSLALRSKEISMQNARLSDLEKMLARSNSQPSARLVASQASTEEVRSLKEENRVLTEAMDVLHRQVEEYENEIRARDSKTPTKSRRSR 1169
                   44444444444444444444445555555555555555555555555555555555555555554444444445555555555555555555555555555554444444443333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0  30.5   2.4e-11   4.8e-08     697     935 ..     163     399 ..     141     416 .. 0.60
   2 !    1.7  28.3    0.0039       8.1     220     491 ..     476     758 ..     427     774 .. 0.60
   3 !    9.4   3.3     2e-05      0.04     332     436 ..    1056    1160 ..     986    1225 .. 0.61

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 2.4e-11
    TIGR02169 697 elrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleae...ieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeels 935
                    ++  ++ ++l++++++ +++++ +++el++ ++e +++ +++++le++l++ + + + kk+  ++ e+e    ++  +++a+l++++edl ++l+e++  e++   ++l+++ ++ e  l+++ a+l  le  +el++  ++ + + +      +++  ke ++l+a++++l++++e+le   +eLe++ +dL+ + e+l +e+++le++ ee+++++e++  +l+e+k  le++  +++
  MMETSP1061-20121228|15957_1 163 PSDSSSEATSALEQQVQELKAEVRSVQEELSRSQAETAEQTNQVKNLEKDLKAAKAASTPKKQVPQTPESEaneAAASDAEIAQLQKQVEDLSRQLDESQK-ESKLAHDELQTKFQQSEVNLAAAKAQLTGLE--EELANRDREAEDQAQS--RTSEANHYKERAKLQADVASLNRRVEQLELDKQELEHNVEDLALDKEQLAEEKEALEDRLEEIKLDYETATMELEETKMVLEEARTRIE 399
                  45566667778888888888888888888888888888888888888888888888888777766655544000455677888888888888888887764.4444455666666666666666666665555..4444333332222222..22223333444455555566666666666666666666666666666666666666666666666666655555555555544444432 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.0039
    TIGR02169 220 ekreleltlllkelealekqkekiekelaeleeelek...leeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkae.iekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkek.leklkeelnelkr.eldrlleel...krleeelaelkael...erieekiaeleeeleelaeeikkaeqkleql.kedlekaekelrklkeeleklekelseler 491
                  ek   e++ l+ ++e+l++  +++e+++ +l+  +e+    e  +e+l +++ ++e++l+   + i++   ee++++++++ee++ae ++ ++r +++ e  ++++ee ++ + ++ +  ++++ + ++++e+ k+e+ +l e  +  + e ++l +  ++  ++aa+l++  +e++++  +++ +++++  r +l+  le l     + +e+a +k el   + + ++   l+  + + a+ i++  ++ +++ k+d e+ e+e +  +e++ +l + +++l+ 
  MMETSP1061-20121228|15957_1 476 EKFVEEASDLATQVESLRETNKELEEQILDLKDMVEQgsaYEIMVEDLSDRVLSLEEELSSSLQIIRE--MEEAAEITAEMEEVQAEeLKAVNRDMEDRETLIRNLEEAIKMQRKREEDFQRTVSNYRKSVETLKQEKSALYELHQGGEGEKSDLASTSQKALARAAQLVQDAAEMRKReAQAAVDRIESQVRmHLSNRLESLlpvSVTAAEVASIKGELllsKVVGKSSLSLDGIARSFAKTIRARAWEWRSNnKADSEEKEEEEETEEEKILELTDDQQQLAA 758
                  22223445566666666666666666666665555542224556777777777777777777777777..57778888888888775256667777777777788888877777777778888888888888888888888887777777777777777777777666666665555440334444444433212222223321112345666667766533344455666777778888888888888765541444555555555556666666666666554 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 2e-05
    TIGR02169  332 idklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieek 436 
                   i++  e++ e   e+   +++ ++l++ l+ + +e +   a+l +++k  a++  + +++  + ++ +ee  +lk e++ l+e    l+ +++e ++e+ +  +k
  MMETSP1061-20121228|15957_1 1056 IENNLEDAVESVPELSLANAKVASLEKSLALRSKEISMQNARLSDLEKMLARSNSQPSARLVASQASTEEVRSLKEENRVLTEAMDVLHRQVEEYENEIRARDSK 1160
                   222223333333344444555555555555555555555555555555555555555555555555555555555555555555555555555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       471  (0.114822); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.26u 0.18s 00:00:01.44 Elapsed: 00:00:00.65
# Mc/sec: 2783.95
//
Query:       MMETSP1061-20121228|15988_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0099   13.5   0.1      0.018   12.6   0.0    1.4  1  TIGR02540 gpx7: putative glutathione peroxidase Gpx7


Domain annotation for each model (and alignments):
>> TIGR02540  gpx7: putative glutathione peroxidase Gpx7
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   4.4e-06     0.018      23      80 ..      83     141 ..      69     151 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 4.4e-06
    TIGR02540  23 kvslvvnvaseceftdknyralqelqrelgpshf.nvlafpcnqfgesepksskeiesf 80 
                  +vs+ v v+   + +d++ +a++e+ +++ ++ f +vla+p  ++  s  k+s+e+ +f
  MMETSP1061-20121228|15988_1  83 DVSINVGVTQRIDGSDAEKQAVREVLKHMDNYFFhEVLALPEYEYARSRCKNSNELCAF 141
                  68999999***********************99856******************99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1049.91
//
Query:       MMETSP1061-20121228|15997_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-25   86.6   0.5    9.8e-15   52.5   0.0    2.2  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    4.2e-21   73.2   0.1    1.1e-20   71.8   0.1    1.6  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.4e-20   70.9   0.2    7.3e-20   69.3   0.2    1.6  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    2.1e-19   67.8   0.2    6.1e-19   66.3   0.2    1.7  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    5.6e-19   66.4   0.0    3.7e-18   63.7   0.0    1.9  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      8e-19   65.9   1.4    3.8e-18   63.7   1.0    1.9  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.3e-18   64.8   0.1    9.8e-09   32.2   0.0    2.0  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    6.2e-18   63.1   0.1    2.6e-17   61.0   0.1    1.8  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    6.2e-18   63.0   1.0    5.8e-17   59.9   0.7    2.0  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    8.2e-18   62.5   0.0    1.7e-17   61.5   0.0    1.4  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    9.3e-18   61.6   0.0    2.4e-10   37.1   0.0    2.0  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.3e-17   61.7   0.0    2.9e-17   60.6   0.0    1.5  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.7e-17   60.7   0.2    9.9e-08   29.5   0.1    2.2  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.7e-17   60.4   0.1    1.1e-16   58.9   0.1    1.6  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    4.7e-17   60.2   0.1    4.9e-16   56.9   0.0    2.0  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      5e-17   59.8   0.1    5.4e-10   36.7   0.0    2.2  2  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    5.5e-17   59.8   0.1    7.5e-16   56.1   0.1    2.0  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    8.2e-17   58.8   1.9    1.6e-08   31.4   0.5    2.0  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.1e-16   58.2   1.1      2e-08   30.8   0.0    2.5  3  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.6e-16   58.5   0.1    5.7e-16   56.7   0.1    1.7  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    6.6e-16   56.3   0.0    1.4e-07   29.1   0.0    2.1  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.5e-15   54.2   0.2      4e-14   50.3   0.1    2.0  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
      6e-15   52.4   0.0    3.2e-07   26.8   0.0    2.1  2  TIGR00958 3a01208: antigen peptide transporter 2
    2.8e-14   51.1   0.0    4.4e-14   50.4   0.0    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    9.3e-14   49.2   0.2    3.4e-12   44.1   0.2    2.1  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.2e-13   49.0   0.0    3.2e-07   27.9   0.0    2.1  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.8e-13   47.8   0.0      2e-12   44.3   0.0    1.9  1  TIGR00955 3a01204: pigment precursor permease
    3.1e-13   47.5   0.0    1.2e-12   45.6   0.0    1.7  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.5e-13   46.8   0.0    7.6e-13   45.6   0.0    1.5  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    3.9e-13   47.2   1.0    2.5e-12   44.5   0.7    1.9  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    7.4e-13   46.1   0.1    1.3e-05   22.3   0.0    2.1  2  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    8.5e-13   46.2   0.0    1.4e-12   45.5   0.0    1.3  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    8.9e-13   46.0   0.1    4.4e-09   33.9   0.0    2.2  2  TIGR01978 sufC: FeS assembly ATPase SufC
      1e-12   45.2   0.0      5e-07   26.4   0.0    2.1  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.6e-12   44.9   0.1    4.6e-12   43.4   0.0    1.6  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.8e-12   44.8   1.2    9.6e-12   42.4   0.8    1.8  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    3.9e-12   43.4   0.0    1.6e-05   21.5   0.0    2.1  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    4.4e-12   43.4   0.3    3.6e-11   40.4   0.2    1.9  1  TIGR01288 nodI: nodulation ABC transporter NodI
    4.6e-12   43.5   0.9    4.3e-11   40.3   0.6    1.9  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    6.3e-12   42.4   0.0    3.1e-05   20.3   0.0    2.0  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.2e-11   41.7   0.0    7.2e-07   25.9   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.3e-11   41.5   0.0    7.2e-06   22.6   0.0    2.0  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.4e-11   42.3   0.1    1.2e-10   39.3   0.1    1.9  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    4.5e-11   40.7   0.0    8.1e-07   26.8   0.0    2.1  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.2e-10   38.9   0.0     0.0001   19.5   0.0    2.1  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    7.7e-10   35.6   0.1    4.4e-05   19.9   0.0    2.0  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
      8e-10   36.0   2.3    3.8e-05   20.6   0.1    2.2  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.3e-09   34.2   0.0    8.6e-05   19.1   0.0    2.1  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.4e-08   30.8   0.3    0.00046   16.7   0.0    2.0  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    4.2e-08   30.8   0.0    6.8e-08   30.1   0.0    1.3  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    3.1e-07   26.2   0.0    0.00063   15.3   0.0    2.0  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    5.8e-07   25.2   0.1    1.7e-05   20.3   0.0    1.9  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    8.9e-07   23.9   0.0    1.1e-06   23.6   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    1.3e-06   25.0   0.4      1e-05   22.0   0.0    1.9  2  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      2e-05   21.3   0.0     0.0054   13.2   0.0    2.0  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    5.1e-05   18.7   0.1    0.00062   15.1   0.1    1.9  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
     0.0028   14.7   0.3       0.17    8.8   0.0    2.2  2  TIGR00611 recf: DNA replication and repair protein RecF
     0.0051   13.4   0.2       0.01   12.4   0.1    1.4  1  TIGR03924 T7SS_EccC_a: type VII secretion protein EccCa
  ------ inclusion threshold ------
      0.015   11.3   0.6       0.11    8.4   0.1    1.9  2  TIGR00630 uvra: excinuclease ABC subunit A
      0.017   11.2   0.0      0.028   10.5   0.0    1.3  1  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
      0.025   11.2   0.0      0.041   10.5   0.0    1.3  1  TIGR03496 FliI_clade1: flagellar protein export ATPase FliI
      0.037   10.5   0.0      0.053   10.0   0.0    1.1  1  TIGR02546 III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
       0.14    8.4   2.9      0.047    9.9   0.1    1.5  2  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD


Domain annotation for each model (and alignments):
>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.1   1.9e-10   1.2e-08      10      68 ..      41      98 ..      24     106 .. 0.86
   2 !   52.5   0.0   1.5e-16   9.8e-15     129     223 ..     161     257 ..     141     265 .. 0.87

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.9e-10
    TIGR03864 10 aygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrra 68
                 ++ +r++l++++lt+++g+ + L+G nG+GkstL+ ++++    ++ e+kv+Gl+  r+
  MMETSP1061-20121228|15997_1 41 QHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRH-LTQQEVKVLGLNSFRE 98
                 567899*********************************965.5567899999875554 PP

  == domain 2    score: 52.5 bits;  conditional E-value: 1.5e-16
    TIGR03864 129 kvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedr.lvvl.hkGkvlaqGaaaelaaea 223
                  ++++L+ G+rrrv i+  l+   k+LLlDe t  LD+  r++l++ + + + e+g ++L+ath++d +++  + l  l +kGk   qG +++l + +
  MMETSP1061-20121228|15997_1 161 HMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFDGLDDWAThLFYLnNKGKCGWQGEMNALEKYQ 257
                  6799****************************************************************9865415555368***9999999998765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.8   0.1   1.7e-22   1.1e-20       7     192 ..      41     223 ..      36     227 .. 0.78

  Alignments for each domain:
  == domain 1    score: 71.8 bits;  conditional E-value: 1.7e-22
    TIGR03608   7 kfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalk..lkkkskkekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellk.elkeegktiiivtH 192
                  +  ++++l++l+l++++G+   ++G  GsGKstlL i++    ++ ++v + g ++    ++++ ++ r   +yl  ++++     v   + l     + k+ +k +++  ++  e v++   +l+ ++++ls+G++ Rv ++  l+++++++l DE t+sLD   r+ +l+ l  e  e+g ti+ +tH
  MMETSP1061-20121228|15997_1  41 QHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQ-QEVKVLGLNSF---RETKLNFHR---AYLNCDWGMTSIAFVGASVPLCADipVYKMMEKLQNSYPERRDELVRMlGIDLNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVkESDERGATILYATH 223
                  56789**********************************976555.67777777733...355566666...68899999988888877766654300333333333333344444455546678999********************************************886156678********* PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.2   1.1e-21   7.3e-20      10     205 ..      42     239 ..      37     257 .. 0.76

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 1.1e-21
    TIGR00968  10 fGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir.....kkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvle 205
                  + + ++l++++l++ktGs   l+G  GsGkstllr+iaG +  ++ ++ + G +  r +  + +  ++  ++ +     v   + +  +i       k ++   ++ +el+++++++   + +  qls Gqr+rv +   l    ++lllde  ++ld  vr++l +wl k  de   t ++ th  +   + a ++  l+
  MMETSP1061-20121228|15997_1  42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRH-LTQQEVKVLGLNSFRETKLNFHRAYLNCDWGMTSIAFVGASVPLCADIPvykmmEKLQNSYPERRDELVRMLGIDL--NWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFDGLDDWATHLFYLN 239
                  5567899********************************53.3444555555555555555555556666666666555666665555443322113333445567777777777753..56789****************9999****************************************9888888887776664 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.2   9.4e-21   6.1e-19      15     200 ..      42     223 ..      23     240 .. 0.73

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 9.4e-21
    TIGR02982  15 elrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkek..ls..akeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvth 200
                  + +++vl+++nl++++g   +l G+ GsGk tll +i+g r++ + e+kvlg +  + ++ +  +      y+   + + ++  +   v + +++     ++  ++   ++ +el++++g+   l+ + ++ls+Gq++rv i  +lv   k++l de t++ld    +++++ l k + e+g+til  th
  MMETSP1061-20121228|15997_1  42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAG-RHLTQQEVKVLGLNSFRETKLNFHR-----AYLNCDWGMTSIAFVGASVPLCADIPVYkmMEklQNSYPERRDELVRMLGI--DLNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATH 223
                  34689********************************99.6677779****96644433333322.....344444444444444444444444432210210012233444556666666..5888899***********************************************************9 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   5.7e-20   3.7e-18      13     211 ..      47     248 ..      39     250 .. 0.86

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 5.7e-20
    TIGR01277  13 lplefdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlk.pgl....klnavqkekvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvved.Gkikvls 211
                  +  +++l++++G r  ++G  G+Gkstll +iaG    ++ e+kv + +  r +  +   + l  +  + +   v   + l  + p      kl+    e+ +++ r +Gi+  l+   ++ls Gqr+rv +   lvr+  illlde  ++ld  +r+++l  + k +de+  t+l  th  + +   a++  ++++ Gk  +++
  MMETSP1061-20121228|15997_1  47 VLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHL-TQQEVKVLGLNSFRETKLNFHRAYLNCDWGMTSIAFVGASVPLCADiPVYkmmeKLQNSYPERRDELVRMLGID--LNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFDGLDDWATHLFYLNNkGKCGWQG 248
                  556789****************************765.6779999999999999888888899999999998889888888765355411125666667889999******8..778889*****************************************************************99999998886437877765 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   1.0   5.9e-20   3.8e-18       9     187 ..      41     225 ..      35     235 .. 0.76

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 5.9e-20
    TIGR01189   9 eRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKa......eLsalEnLkfyaallqseqktveealekvgLsgle.dlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkeg.vellaellaaHlargGivllathqd 187
                  + +er++l++l+++l++G    + G nG+GK+tLLRi+aG    ++ ev++ + ++ +++ +l+ + +yl    g+ +      ++    ++  y+ + + ++   e   e v + g++ +  ++qLs Gq+rR+ +   l+   ++ +LDE tt+lD+   ++ll+ l+++  +rg ++l ath+ 
  MMETSP1061-20121228|15997_1  41 QHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRH-LTQQEVKVLGLNSFRET-KLNFHRAYLNCDWGMTSiafvgaSVPLCADIPVYKMMEKLQNSYPERRDELVRMLGIDlNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVrQDLLKWLVKESDERGATILYATHIF 225
                  5799************************************54.44556665554444444.344566777777776651111113344455666666666555566666677777777547889**********************************988588899999999999*9*******85 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   4.2e-10   2.8e-08     345     388 ..      42      85 ..       7     110 .. 0.77
   2 !   32.2   0.0   1.5e-10   9.8e-09     465     528 ..     158     223 ..     127     224 .. 0.86

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 4.2e-10
    TIGR02868 345 pgaeevlkgvsldlepGervavvGasGaGKstLlallaglldpl 388
                   ++ +vl++++l+l+ G+r  ++Ga G+GKstLl ++ag   ++
  MMETSP1061-20121228|15997_1  42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQ 85 
                  23445*********************************966543 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 1.5e-10
    TIGR02868 465 lgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt..vvlvth 528
                  l+ + ++lS G+r+R+ +   L+ ++++llLDE t +LD+ ++++ll+ L++ +++r   ++  th
  MMETSP1061-20121228|15997_1 158 LNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGatILYATH 223
                  5566789********************************************666555433777887 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.1     4e-19   2.6e-17      14     201 ..      44     229 ..      38     242 .. 0.82

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 4e-19
    TIGR02673  14 gveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalal.....evrgkkeeeiqkrveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserild.llkelnkrGttvivathdeelve 201
                  + ++L++++l+++ g+ + l+Ga G+Gk+tll+++ g++  ++ ev+v g  ++++re +l + R  +     D+ + +   v   v l       ++  k ++++ +r +e+++++g++       ++ls G + Rv i   +v+  ++ll De t  lD  + +++l+ l+ke  +rG+t++ ath  + ++
  MMETSP1061-20121228|15997_1  44 ERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHL-TQQEVKVLG--LNSFRETKLNFHRAYLNC---DWGMTSIAFVGASVPLCAdipvyKMMEKLQNSYPERRDELVRMLGIDLN--WHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKwLVKESDERGATILYATHIFDGLD 229
                  6789*******************************99876.556899988..678999999999987765...77777777777777665411111455666788999**********9865..55689****************************************95668999***********766555 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.7   8.9e-19   5.8e-17       3     222 ..      24     236 ..      22     244 .. 0.80

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 8.9e-19
    TIGR02769   3 levsdvshtyrtggllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhl.tsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvl 222
                  ++v+d++  y ++g l +++ ++vl+n++l+l++G    l+G  G+Gkstl r++ G    ++ ev+  G +     r+++  f+r         +s      sv      P+ ++ ++l++s   +r  el+++++++    +   +qls Gq +r+ i   l    k+++lde  ++ld+  +  +l+ l k  +e G ++l+ th +   +  a ++ 
  MMETSP1061-20121228|15997_1  24 IDVKDLTFGYSSTGALDQHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHL-TQQEVKVLGLNSF---RETKLNFHRAYLNCDWGMTSIAFVGASVPLCADIPVYKMmEKLQNSY-PERRDELVRMLGIDL---NWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFDGLDDWATHLF 236
                  789******************************************************765.6668988886543...34444555544333333333334456777777778866515566665.566789******975...55678****************9999****************************************8776666666655 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   2.6e-19   1.7e-17       4     213 ..      43     255 ..      40     307 .. 0.74

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 2.6e-19
    TIGR01188   4 gefkAvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellge..lyglpkkeae...eraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwd.lieelkkegvtilltthyleeadkladrvaii.dkGkiiaedtpeeLKe 213
                  +e + ++++nl ++ g+   l+G nG GK+t+++++++  + ++ +++v G +  re +   ++  +  +      +  +   + l+++  +y + +k ++   er +el+ ++ +    + +++++s G+rrr+++  +l+   ++l LDE t+ LD+  r+ + + l++e  + g til +th ++  d  a ++  + +kGk   ++ ++ L +
  MMETSP1061-20121228|15997_1  43 DERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGR-HLTQQEVKVLGLNSFRETKLNFHRAYLNCDWGMTSIAFVGA-SVPLCADipVYKMMEKLQNsypERRDELVRMLGID--LNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKwLVKESDERGATILYATHIFDGLDDWATHLFYLnNKGKCGWQGEMNALEK 255
                  66678899****************************995.557889************97777777777766666666665.57888873358888887763336888888887775..577899*************************************98765267777777*****************999876625777666666666653 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   3.6e-12   2.4e-10     477     529 ..      23      82 ..      10     109 .. 0.86
   2 !   22.6   0.0   9.1e-08   5.9e-06     614     677 ..     163     230 ..     150     259 .. 0.79

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 3.6e-12
    TIGR03796 477 kvelrnvtfgysal.......eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGly 529
                  +++++++tfgys +       e++++++++l+lk G+r  l+G+ GsGkst+ +++aG +
  MMETSP1061-20121228|15997_1  23 AIDVKDLTFGYSSTgaldqhdERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRH 82 
                  5899*******8643333333789**********************************66 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 9.1e-08
    TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl....rrRgctciivaHRLstiRd 677
                  + ls Gqr R++i   Lv+   iL+lDE t++LD  + + + + l     +Rg t++  +H    + d
  MMETSP1061-20121228|15997_1 163 HQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLvkesDERGATILYATHIFDGLDD 230
                  579********************************999988776622225699999988887666555 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.6   0.0   4.5e-19   2.9e-17     332     515 ..      42     223 ..      10     233 .. 0.85

  Alignments for each domain:
  == domain 1    score: 60.6 bits;  conditional E-value: 4.5e-19
    TIGR02857 332 egrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegt.vaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaH 515
                  ++++++l++++lt++ g++  l+Ga G+GKstll++++g    t+ +++v g   +++++ +++ + a++     +++ + v + + l ++d    ++ e l++   ++  ++l ++l   +  + ++LS Gqr+R+ +   l+r+ ++lllDE t +LD    +++l+ l + +  +g+t+l ++H
  MMETSP1061-20121228|15997_1  42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHL-TQQEVKVLGL--NSFRETKLNFHRAYLNCDWGMTSIAfVGASVPL-CADIPVYKMMEKLQNSYPER-RDELVRMLGIDLNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESdeRGATILYATH 223
                  56668**********************************996.7778888664..788888888888999888888876514445555.56667777778888877755.788889999************************************************99988776567889999999 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   1.5e-09   9.9e-08       3      41 ..      43      81 ..      41     106 .. 0.87
   2 !   29.0   0.0   2.1e-09   1.4e-07     124     186 ..     161     224 ..     139     227 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 1.5e-09
    TIGR01166  3 deaevlkglnlavergevlallGanGaGkstlllhlnGl 41
                 de +vl++lnl+++ g++  l+GanG+Gkstll+ ++G 
  MMETSP1061-20121228|15997_1 43 DERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGR 81
                 6889********************************995 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 2.1e-09
    TIGR01166 124 pthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleil.rklreeGktvvisthd 186
                   +h+ls G+++rv i   ++   ++lllde t++ld   ++ ll+ l ++  e G t++ +th 
  MMETSP1061-20121228|15997_1 161 HMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLvKESDERGATILYATHI 224
                  589****************9999***************9999988651677889*********5 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.9   0.1   1.7e-18   1.1e-16      15     227 ..      50     261 ..      40     289 .. 0.77

  Alignments for each domain:
  == domain 1    score: 58.9 bits;  conditional E-value: 1.7e-18
    TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaG..Ltrpdegeivldg...evlqdsrkkiilppekRrvgyvFqeAr..LFpHlsvrenLrYGlkraraeerriseekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvle.dGrvkaagkleevlaskdlsl 227
                  +++l+l++  ++ l G+ GsGk++l+r+iaG  Lt+ +   + l+    + l+    +  l  +    ++ F  A+  L + + v + ++  l+++ +e    + ++++++Lgi+  l+ + ++Ls G + Rv i   l+   ++Ll+De  ++LD   ++++l +L + s+e    ily  H +d +   a ++  l+ +G+   +g+++++ + ++l+ 
  MMETSP1061-20121228|15997_1  50 NLNLTLKTGSRCLLIGANGSGKSTLLRIIAGrhLTQQEVKVLGLNSfreTKLNFH--RAYLNCDWGMTSIAFVGASvpLCADIPVYKMME-KLQNSYPE----RRDELVRMLGID--LNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFDGLDDWATHLFYLNnKGKCGWQGEMNALEKYQQLKR 261
                  56788888889********************555555555555554211333333..445555555555555555511566666655443.34444444....57*********9..8999********************9*****************************************************9886269*999999999998887764 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.9   0.0   7.6e-18   4.9e-16       9     217 ..      41     259 ..      36     263 .. 0.78

  Alignments for each domain:
  == domain 1    score: 56.9 bits;  conditional E-value: 7.6e-18
    TIGR03740   9 kfkkqavvnnvslkvkknsvygllGpnGaGkstllklltG.llrktsGeil.ldgre.....wtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdle.ntekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelre.liksfpekGitvilsshilsevelladhiGiise.Gklkyekkidkdedleel 217
                  ++ +++v++n++l++k  s   l+G nG+Gkstll++++G  l++++ ++l l++ +     + r  l+    +     +   +    ++ v  ++++l++s  e   ++v +   +   + +q+s G ++r+ i + l++  k+l+lde t  ld    q+l + l+k   e+G t++ ++hi+  ++  a h+  +++ Gk +++++++  e+ ++l
  MMETSP1061-20121228|15997_1  41 QHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGrHLTQQEVKVLgLNSFRetklnFHRAYLNCDWGMTSIAFVGASVPLCADIPVYKMMEKLQNSYPERRDELVRMLgIDLNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKwLVKESDERGATILYATHIFDGLDDWATHLFYLNNkGKCGWQGEMNALEKYQQL 259
                  67899***********************************53555554443244444000113444454333444444555666677889999999999998766666666544034567899***********************************99997553999*************************98876449*******9987776665 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   5.4e-07   3.5e-05      10      48 ..      42      80 ..      35     101 .. 0.85
   2 !   36.7   0.0   8.3e-12   5.4e-10     126     235 ..     146     254 ..     129     269 .. 0.85

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 5.4e-07
    TIGR03005 10 fgeltvldglelevaaGekvaliGpsGsGkstilrilmt 48
                 ++e +vl++l+l++++G +  liG  GsGkst+lri+  
  MMETSP1061-20121228|15997_1 42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAG 80
                 66778*******************************864 PP

  == domain 2    score: 36.7 bits;  conditional E-value: 8.3e-12
    TIGR03005 126 ravelldmvGladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlff.dkGkiveeGkpdeif 235
                  r  el+ m+G+    +    qls Gq++rv i   l    k+ll+de+t++ld  + +++l+ l + + e+  t+l  th +    + a  + ++ +kGk   +G+ + + 
  MMETSP1061-20121228|15997_1 146 RRDELVRMLGIDL--NWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFDGLDDWATHLFYLnNKGKCGWQGEMNALE 254
                  6668999999853..44457****************9999*************************************************9988873699999999877664 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.1   1.1e-17   7.5e-16      13     235 ..      43     255 ..      35     261 .. 0.83

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 1.1e-17
    TIGR02315  13 ngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenv.LsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglka.geivfdgasseldd 235
                  +++++l+n+nl++k G    +iG  G+Gkstllr i + +  ++ ++++ g  +++ ++ +l+ +r   +++  ++ + +   v + v L + + + +++++l + ++e+      el++ +g++     ++ qLs Gq+ Rv i   l++  k++l DE ++sLD    + +++ l + + e+g t++   H  d    +a+++  l++ g+  ++g+ ++l++
  MMETSP1061-20121228|15997_1  43 DERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHL-TQQEVKVLG--LNSFRETKLNFHR---AYLNCDWGMTSIAFVGASVpLCADIPVYKMMEKLQNSYPERRD----ELVRMLGIDLN--WHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFDGLDDWATHLFYLNNkGKCGWQGEMNALEK 255
                  57899******************************987543.334444443..4455666666555...7888999999998888888688888888888888888876654....45667777654..45789************************************************************************9975388888888888776 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0     7e-09   4.6e-07      16      53 ..      43      80 ..      31      93 .. 0.83
   2 !   31.4   0.5   2.5e-10   1.6e-08     156     298 ..     159     299 ..     145     317 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 7e-09
    TIGR03719 16 pkkeilkdislsffpgakiGvlGlnGaGkstllkimaG 53
                 +++++l++++l+  +g++  ++G nG+Gkstll+i+aG
  MMETSP1061-20121228|15997_1 43 DERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAG 80
                 47899999999999999999999999999999999998 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 2.5e-10
    TIGR03719 156 dakveklsGGekrrvalcrlllekPdlllldePtnhlda....esvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarqakskarlaryeelas 298
                  ++++++ls G++rrv +   l+    +lllde t  ld     + ++Wl k   e   t++  th    ld+ a  +  l+    + ++g+  + le+  +    + k++++ +k l+   +W+r++ +  +ak++   a+y  ++ 
  MMETSP1061-20121228|15997_1 159 NWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVcvrqDLLKWLVKESDERGATILYATHIFDGLDDWATHLFYLNNKGKCGWQGEMNA-LEK-YQ----QLKRDNHPAKMLAVADHWLRKELEEARAKNQYEKATYAAMEL 299
                  67899************99999999*************744436789****9999999**********************999999****9865.443.33....346677788899999999999988888888888888877765 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0     3e-10     2e-08     466     517 ..      24      82 ..      17     100 .. 0.79
   2 !   25.6   0.1   1.2e-08   7.7e-07     602     661 ..     163     224 ..     154     261 .. 0.90
   3 ?   -1.7   0.0       2.1   1.4e+02     121     158 ..     258     296 ..     239     298 .. 0.66

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 3e-10
    TIGR03375 466 ielknvsfkY.......peeekaaLknvslkikpGekvaiiGriGsGKstllklllgly 517
                  i++k+++f Y       + +e+++L+n++l++k G++  +iG +GsGKstll++++g  
  MMETSP1061-20121228|15997_1  24 IDVKDLTFGYsstgaldQHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRH 82 
                  56666666663322222357899********************************9954 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 1.2e-08
    TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHr 661
                  ++LS GQr+ v +   l++  +illLDE t++lD    ++ll+ L + +   + T++ +tH 
  MMETSP1061-20121228|15997_1 163 HQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDerGATILYATHI 224
                  68*******************************************999886688*******5 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 2.1
    TIGR03375 121 eakldkraeelekakkkhWfwstlkes..krlyrdvlias 158
                  + k d++  ++  a  +hW+++ l+e   k++y +++ a+
  MMETSP1061-20121228|15997_1 258 QLKRDNHPAKM-LAVADHWLRKELEEAraKNQYEKATYAA 296
                  34444444444.4678999999998751156788888777 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.7   0.1   8.8e-18   5.7e-16      16     209 ..      45     236 ..      33     243 .. 0.82

  Alignments for each domain:
  == domain 1    score: 56.7 bits;  conditional E-value: 8.8e-18
    TIGR00960  16 elaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsd.rtvydnvalal.riiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdile.lleevnraGttvlvathdenlveskrkrvl 209
                  +  l+n+++ +++G+   l+G  G+Gkstll++i g++ + + +++v g  l+ +r+ ++ f r  + + +    +     +v     +++ +++ +  + ++er  + ++ +G+    +    qls G+++rv+i   +v+  ++ll de t+ ld  + +d+l+ l++e +++G t+l ath  + +++   +++
  MMETSP1061-20121228|15997_1  45 RNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLT-QQEVKVLG--LNSFRETKLNFHRAYLNCDWGMTSIAFVgASVPLCADIPVyKMMEKLQNSYPERRDELVRMLGIDLNWHM--HQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKwLVKESDERGATILYATHIFDGLDDWATHLF 236
                  5689*******************************99875.56888876..899**********999986665555433033333333443256667778889999999999999876664..79****************************************957799*************8877777666555 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   3.1e-08     2e-06      16      61 ..      42      85 ..      24     104 .. 0.86
   2 !   29.1   0.0   2.1e-09   1.4e-07     129     207 ..     147     223 ..     127     235 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 3.1e-08
    TIGR02324 16 qgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpe 61
                 +   +++vl++++l++++G    l+G+ G+Gkstll+ + + +l++
  MMETSP1061-20121228|15997_1 42 H--DERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQ 85
                 3..4789*******************************99888776 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 2.1e-09
    TIGR02324 129 akellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvve.likeakargaaligifh 207
                   +el++ l i +  W++     s G ++Rv i  +l+ +  iLLLde t+sLd   r+  ++ l+ke  +rga+++   h
  MMETSP1061-20121228|15997_1 147 RDELVRMLGI-DLNWHMH--QLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKwLVKESDERGATILYATH 223
                  5566677777.6779988..89********************************9998776548999*******997777 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.3   0.1   6.2e-16     4e-14      11     210 ..      42     238 ..      35     253 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.3 bits;  conditional E-value: 6.2e-16
    TIGR03873  11 aggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdae.vplsvrdvvalGriPhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlella.lvrelaaegvtvvvalhdlnlaasvcdhvvvl 210
                   ++r ++ ++++t  +G+   l+G nGsGkstllr++aG   ++  ev++ g  l++++  +   + a ++ d     + +    v +   iP   ++    ++  e  d+++ + +++   + +++ ls G+r+rv++   l +  k+lllde t  ldv  + +ll+ lv+e  + g+t++ a h ++     + h+  l
  MMETSP1061-20121228|15997_1  42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQ-QEVKVLG--LNSFRETKLNFHRAYLNCDWGMTsIAFVGASVPLCADIPVYKMMEKLQNSYPERRDELVRMLGIDL--NWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKwLVKESDERGATILYATHIFDGLDDWATHLFYL 238
                  68999**********************************87654.5676666..5677777778888888888765505555555666789**999999988888999999988888763..67899****************************************98356666677899999*99887777777776665 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   4.9e-08   3.2e-06     480     527 ..      25      78 ..      17      83 .. 0.79
   2 !   26.8   0.0   4.9e-09   3.2e-07     616     701 ..     163     254 ..     154     262 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 4.9e-08
    TIGR00958 480 eFqdVsFsYPs......rpdkpvlkdLtftlepGevvalVGPsGsGKStvaall 527
                  + +d +F Y s      + +++vl++L++tl+ G+   l+G +GsGKSt   ++
  MMETSP1061-20121228|15997_1  25 DVKDLTFGYSStgaldqHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRII 78 
                  5666667665422222267899***************************87665 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 4.9e-09
    TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe....sksaksrtvlliahrLstvek.adkilvlk.kgsvvelGthkqLm 701
                  +qls Gq+ r+ i   Lvr   +L+LDe t  LD+ v q l +       +++ t+l  +h        a + + l+ kg+   +G+ + L 
  MMETSP1061-20121228|15997_1 163 HQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKwlvkESDERGATILYATHIFDGLDDwATHLFYLNnKGKCGWQGEMNALE 254
                  79*********************************887776663422344455688888887765543266777665245666666666665 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   6.8e-16   4.4e-14       1     176 [.      48     226 ..      48     245 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 6.8e-16
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliag..lekptsgavilegkeitepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvgl.reaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvd 176
                  l++++l++k g    lig  g gkstll +iag  l +     + l+  + t+   +r  +  ++ +     v   + l  d  + ++ ++ +++  e + elv +     + +++qls g ++rv i  +l    k+lllde   +ld   r++l + l+k  +e+ +t+l  th  d
  MMETSP1061-20121228|15997_1  48 LHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGrhLTQQEVKVLGLNSFRETKLNFHRAYLNCDWGMTSIAFVGASVPLCADIPVYKMMEKLQNSYPERRDELVRMlGIDLNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFD 226
                  6799*****************************3344444455556666667778889999999999999999*********999999999999999999888875145668899*****************8777****************************************877 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.2   5.2e-14   3.4e-12       2     197 ..      48     236 ..      47     258 .. 0.80

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 5.2e-14
    TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailg.lldkeltktsGeilldgkelaal.alrgreialilqnPrsafnPllt.i.keqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladeva 197
                   +++nl+lk+g  + l+G+ GsGks+    i g  l ++ +k+ G   +++ +l+   a+ + + ++     + a  Pl + i   +++e l      +++  e+  e ++  g++     l+ + ++ls G   Rv i l l+    +l+ De tt lDv v+  +Lk l +  ++rg +il+ th +  +   a ++ 
  MMETSP1061-20121228|15997_1  48 LHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGrHLTQQEVKVLGLNSFRETKLNFHrAYLNCDWGMTSIAFVGASVPLCAdIpVYKMMEKL------QNSYPERRDELVRMLGID-----LNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFDGLDDWATHLF 236
                  689**********************99888887358889999********999997766667777776666666666665411112333333......322223334455666888.....89****************************************************************8877777776665 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   4.9e-09   3.2e-07      15      66 ..      42      92 ..      28     119 .. 0.86
   2 !   19.1   0.0   2.5e-06   0.00016     135     200 ..     158     223 ..     125     241 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 4.9e-09
    TIGR02211 15 kleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkG 66
                 + e +vl++++l +++g    ++G+ GsGkstll +++g    t+ ev++ G
  MMETSP1061-20121228|15997_1 42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRH-LTQQEVKVLG 92
                 56789*********************************965.5777888877 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 2.5e-06
    TIGR02211 135 inkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvth 200
                  +n +  +ls G+r+rv i   lv   k++l de t+ ld    + +++ l +   e++ ++l +th
  MMETSP1061-20121228|15997_1 158 LNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATH 223
                  5667789*****************************************999999999999999999 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   3.1e-14     2e-12      33     279 ..      40     279 ..      22     306 .. 0.72

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 3.1e-14
    TIGR00955  33 rkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahl...rlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkkla.qkgktviltiHQPsselfelfdkii.llaeGrvvylGspeeavkffselglpcPen.ynpadFvlkvl 279
                   +++e+++l+n   ++k+G    ++G+ G+GK+TLl ++a r+ ++ +v+    ln  +  +++++   ay++ d  +     v  ++ + a +   ++ ++l++ +  er +e++++lg+          + +++ lS G+r+R+ +   l+   ++L++DE T++LD    + ++k L k + ++g t++   H     l +  ++++ l ++G++ ++G+ + + k+ +    + P++    ad+ l++ 
  MMETSP1061-20121228|15997_1  40 DQHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQQEVKV-LGLNSFR--ETKLNFHRAYLNCDWGMTSIAFVGASVPLCADIpvyKMMEKLQN-SYPERRDELVRMLGIDL--------NWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESdERGATILYATHIF-DGLDDWATHLFyLNNKGKCGWQGEMNALEKYQQLKRDNHPAKmLAVADHWLRKE 279
                  4567999***********************************999988833.5566555..55788888999876544444445556666666522255554433.44577799999998654........344667*****************************************99666616788888877732.334444445651557899999999999998877777777765146677766543 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.8e-14   1.2e-12      10     221 ..      42     255 ..      36     261 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.8e-14
    TIGR03410  10 YgesevlrdvslevekgevvavlGrngvGkttllkalvgllkvks.....GeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladr.ylvlerGevvaegekeelde 221
                  ++e +vl++++l++++g+   ++G ng Gk+tll+ + g + +++     G  ++++++++ ++++   + G++ +     ++p l     +   +e+l+   ++ pe+  el  +l   l+ +  +Ls Gq+  + i   Lv   k+llLDe t  +   + +++ k + + ++e++ +il   + +d   + a + +++ ++G+   +ge+++l++
  MMETSP1061-20121228|15997_1  42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQQevkvlGLNSFRETKLNFHRAYLNCDWGMTSIAFVGASVP-LCADIPVYKMMEKLQ---NSYPERRDELVRMLGIDLNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFDGLDDWATHlFYLNNKGKCGWQGEMNALEK 255
                  57889**********************************876554233336667888999999999998888655554444444.222323333344444...455556666666666677778889**************************************************************99998877256667999999998888765 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   1.2e-14   7.6e-13     487     668 ..      45     224 ..      18     257 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 1.2e-14
    TIGR01193 487 sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilen.lllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdk...tiifvahr 668
                  ++vl++++l++k+ ++  l+G  GsGkstl +++ + + +++         l+ + +++l  + +yl  +  + s + +   + l a   v + + k   +  e +d++ ++   +  +l  +  ++s Gq++r+ +   l+ + k+l+lde t++ld+ + + +++ l+k +d    ti++ +h 
  MMETSP1061-20121228|15997_1  45 RNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQQEVKV---LGLNSFRETKLNFHRAYLNCDWGMTSIAFVGAsVPLCADIPVYKMMEKLQNSYPERRDELVRM---LGIDLNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDErgaTILYATHI 224
                  79********************************998765554333...446667777777777777777777666655441446676666665555566788999998887...4567888999********************************************99876434377777775 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.5   0.7   3.8e-14   2.5e-12      13     193 ..      41     223 ..      36     235 .. 0.78

  Alignments for each domain:
  == domain 1    score: 44.5 bits;  conditional E-value: 3.8e-14
    TIGR03265  13 efeaftalkdislsvkkgelvclLGPsGCGkttLLriiaG..LekqdaGaillggrditrlppq....krdyGivfqsYaLfPnltvaenia.yGLknkklkreevaerveelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvth 193
                  + ++ ++l++++l++k g    l+G  G Gk+tLLriiaG  L +q+   + l+    t+l  +    + d+G+   +++   ++ + ++i  y + +k   ++   er +el+ ++g++ +   +  qls Gq++rv +   l+   ++LLLDe   +LD  vr+ L + l k   + g t +  th
  MMETSP1061-20121228|15997_1  41 QHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGrhLTQQEVKVLGLNSFRETKLNFHraylNCDWGMTSIAFVG-ASVPLCADIPvYKMMEKL--QNSYPERRDELVRMLGIDLN--WHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATH 223
                  5677899*********************************44455555555555555555544311115799997666654.455556666514444444..6678889999****999865..5667***************************************999888888888999888888 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     2e-07   1.3e-05      19      56 ..      43      80 ..      38      94 .. 0.92
   2 !   21.8   0.0   2.7e-07   1.7e-05     135     202 ..     161     227 ..     142     282 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2e-07
    TIGR03258 19 garvvlddlsleieaGellallGksGsGkttllravaG 56
                 + r vl++l l++++G    l+G  GsGk+tllr++aG
  MMETSP1061-20121228|15997_1 43 DERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAG 80
                 5689*********************************9 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 2.7e-07
    TIGR03258 135 lpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrde 202
                    +qls Gq++rv +   lv   ++lllde  ++ld  +r+++ + l +  +e    t+ly th  d 
  MMETSP1061-20121228|15997_1 161 HMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDER-GATILYATHIFDG 227
                  469****************9888*******************998887765554.579*****96544 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   2.2e-14   1.4e-12      12     226 ..      42     260 ..      26     305 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 2.2e-14
    TIGR03522  12 ygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaal..yklkgrklk...krveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlvei.revikeia.kdktvilsthimqevealcdrviii.nkGkivadkkleelkaaekkk 226
                  + ++++l ++ ++ + G+   ++G nG+Gkstl++i++g   +    v+v g +  ++++  + +  yl     +    +v   + + a++  yk+ +++++   +r +el+++ G+  + h  + +ls G r+rv +   l+   k+l+lde tt ld     ++ + ++ke   +  t++++thi   ++    ++  + nkGk   + +++ l++ ++ k
  MMETSP1061-20121228|15997_1  42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLT-QQEVKVLGLNSFRETK-LNFHRAYLNCDWGMTSIAFVGASVPLCADIpvYKMMEKLQNsypERRDELVRMLGIDLNWH--MHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLlKWLVKESDeRGATILYATHIFDGLDDWATHLFYLnNKGKCGWQGEMNALEKYQQLK 260
                  5678999*******************************97654.5689****99998865.556668**********9****99999998544***99887733368889999999988877..78*********************************87655541446665541568************99999887652799999999999998887733 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   6.7e-11   4.4e-09      11      52 ..      43      84 ..      38     104 .. 0.89
   2 !   10.1   0.0    0.0013     0.082     145     231 ..     165     252 ..     130     262 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 6.7e-11
    TIGR01978 11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlagheky 52
                 +++++L++lnl++k+G    ++G+nGsGkstL +++ag++ +
  MMETSP1061-20121228|15997_1 43 DERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLT 84
                 789***********************************8754 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0013
    TIGR01978 145 fsGGekkrneilqlalleP.klaiLDeiDsGlDvDalkivaegv.nklreeekalliithyerllelikPdvvhvlldGrivksGdvel 231
                   s G ++r +i+   l++P k+ +LDei   lDv   + + + + ++  e+  ++l  th    l+  +    ++  +G+   +G+++ 
  MMETSP1061-20121228|15997_1 165 LSDGQRRRVQIML-GLVRPfKILLLDEITTSLDVCVRQDLLKWLvKESDERGATILYATHIFDGLDDWATHLFYLNNKGKCGWQGEMNA 252
                  6899******985.5556559*************8888777755055555577777788887777777777777777777777777665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   7.7e-09     5e-07     451     501 ..      23      80 ..      19      86 .. 0.84
   2 !   16.6   0.0   6.9e-06   0.00045     588     621 ..     164     197 ..     160     211 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 7.7e-09
    TIGR03797 451 aievdrvtFrY.......ekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLg 501
                  ai+v+ +tF Y       ++d + vL++++l+ + G    ++Ga GsGKStllr++ g
  MMETSP1061-20121228|15997_1  23 AIDVKDLTFGYsstgaldQHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAG 80 
                  689999999993333333357789******************************9876 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 6.9e-06
    TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDN 621
                  +lS GQr R+ i   lvr  +ill+DE T  LD 
  MMETSP1061-20121228|15997_1 164 QLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDV 197
                  79******************************95 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0     7e-14   4.6e-12      19     204 ..      46     228 ..      37     250 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 7e-14
    TIGR02314  19 kaldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqi....gmifqhfnllssrtvfgnvalplelentpkekikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvv 204
                  + l+n++l +  g  + +iga g+gkstl+r +    + t+ +v v g  l ++++++l   r  +    gm    f   +s  +  ++ +  ++ ++ ++   ++ +el+ ++g+    + +  +ls gq++rv i   l    k+ll de t++ld    q +l+ l +   + g til  th +d +
  MMETSP1061-20121228|15997_1  46 NVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAG-RHLTQQEVKVLG--LNSFRETKLNFHRAYLncdwGMTSIAFV-GASVPLCADIPVY-KMMEKLQNSYPERRDELVRMLGIDL--NWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFDGL 228
                  5799***************************9975.566778888877..5566777776666544111155554443.3344445555443.56667788889999*******9975..456779****************************************9887777888*********98865 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.8   1.5e-13   9.6e-12       1     159 [.      63     223 ..      63     228 .. 0.81

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 1.5e-13
    TIGR01187   1 lLGpsGsGkttlLrllaG..leeldsGkilldgedvtevpaekrsvnvvfq..syaLfPhmtv..eenvafgLkmrkvpkaeikervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvth 159
                  l+G+ GsGk+tlLr++aG  l + +   + l+    t+   ++ ++n  +   s a f   +v   +++    km +  ++   er  e++++  ++   + +++qls Gqr+rv +   +v   kiLLlDe  ++LD  +r+ + + l++  ++ G t+++ th
  MMETSP1061-20121228|15997_1  63 LIGANGSGKSTLLRIIAGrhLTQQEVKVLGLNSFRETKLNFHRAYLNCDWGmtSIA-FVGASVplCADIPVY-KMMEKLQNSYPERRDELVRMLGIDL--NWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATH 223
                  78****************55556666666788888899999999999876511444.555555115555544.5555556667788899999987764..6789************************************************************9 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   7.7e-07     5e-05     337     387 ..      23      79 ..       4     106 .. 0.76
   2 !   21.5   0.0   2.5e-07   1.6e-05     474     527 ..     162     215 ..     138     233 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 7.7e-07
    TIGR02204 337 eiefeevkfayP......arpdqkaldgldltvrpGetvalvGPsGaGkstllelll 387
                  +i +++++f y       ++ ++++l++l+lt+++G +  l+G  G+Gkstll+++ 
  MMETSP1061-20121228|15997_1  23 AIDVKDLTFGYSstgaldQHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIA 79 
                  566666677665222221456789******************************986 PP

  == domain 2    score: 21.5 bits;  conditional E-value: 2.5e-07
    TIGR02204 474 gvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrt 527
                    +Ls Gq++r+ i   +++  +iLLLde t++Ld    q + + l + +++r 
  MMETSP1061-20121228|15997_1 162 MHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERG 215
                  568********************************9888877776666666654 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.2   5.5e-13   3.6e-11      14     211 ..      42     241 ..      34     257 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 5.5e-13
    TIGR01288  14 ygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgr.yfglstreieevipsll.efar.leskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwe.rlrsllargktilltthlmeeaerlcdrlcvleag 211
                  + ++ v+++l +t+ +g    l+g ng+gkst+ r++ g     + ++ vlg +   +++l   +  +  ++      f      l      +++   ++++  p    e+ r l    + ++ +ls g +rr+ +   l+   ++l+lde tt ld   r+ + +  ++    rg til +th+++  +     l  l++ 
  MMETSP1061-20121228|15997_1  42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLT-QQEVKVLGLNSFRETKLNFHRAYLNCDWGMTSIAFVGASVPLCADIpVYKM-MEKLQNSYPERRdELVRmLGIDLNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKwLVKESDERGATILYATHIFDGLDDWATHLFYLNNK 241
                  56678999*********9999******************8654.457788888888888888888888888988889998777666655414455.4567888887651677735678999**************************************997555404577789************9999888888777654 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.3   0.6   6.6e-13   4.3e-11       9     191 ..      48     226 ..      42     233 .. 0.79

  Alignments for each domain:
  == domain 1    score: 40.3 bits;  conditional E-value: 6.6e-13
    TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrlln.rliePtaGkilidGediaeisdaelrevrrk..kiamviqkialfPhmtildnislglellkideqerkekalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdld 191
                  +++++l ++ G    +iG  GsGkstl+r++  r +  t+ ++ + G +     + ++   +r      + + +ia++     l     + ++++  ++   e+  e++++++++   +   ++ls G+++rv ++  l    ++ll+de  ++ld  +r++l + lvk  ++   ti++ th +d
  MMETSP1061-20121228|15997_1  48 LHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAgRHL--TQQEVKVLGLNSFRETKLNF---HRAylNCDWGMTSIAFVGASVPLCADIPVYKMMEKLQNSYPERRDELVRMLGIDLNWH--MHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFD 226
                  57899*************************973554..66667777877666666555...3330144566777777766554444444555555555667778889999999975444..69************************************************************877 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   5.5e-07   3.6e-05     466     514 ..      41      90 ..      20      93 .. 0.79
   2 !   20.3   0.0   4.7e-07   3.1e-05     592     677 ..     163     252 ..     152     263 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 5.5e-07
    TIGR01846 466 kedspevlsnlsldikaGeviGivGpsGsGkstltkllq.rlyvPekGrv 514
                  ++d+ +vl+nl+l +k+G    ++G  GsGkstl +++  r  + ++ +v
  MMETSP1061-20121228|15997_1  41 QHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAgRHLTQQEVKV 90 
                  468899*****************************998535555555555 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 4.7e-07
    TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreic..kgrtviiiahrlstvra.adrilvl.ekGkivesGkhee 677
                   +ls Gqr+r+ +   lv   +il+lde t++ld    + + + l + +  +g t++  +h ++ + + a +++ l +kGk   +G+ + 
  MMETSP1061-20121228|15997_1 163 HQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESdeRGATILYATHIFDGLDDwATHLFYLnNKGKCGWQGEMNA 252
                  68*********************************9999998888776622555788888888877653444444424677766666665 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.1e-08   7.2e-07     328     372 ..      42      86 ..      29     109 .. 0.85
   2 !   13.7   0.0   5.4e-05    0.0035     453     513 ..     163     224 ..     156     253 .. 0.85

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.1e-08
    TIGR01842 328 eekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpas 372
                  ++++++l++++++lk+G+   +iG+ gsGks+L r++ G  l+++
  MMETSP1061-20121228|15997_1  42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQQ 86 
                  67789**********************************987765 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 5.4e-05
    TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalk.elkarkitvvvithr 513
                  ++Ls Gqr R+ +   l +  k+++LDe  ++LD    q l+k l+ e  +r++t++  th 
  MMETSP1061-20121228|15997_1 163 HQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVkESDERGATILYATHI 224
                  58*************************************99998751567788888888885 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.1e-07   7.2e-06     343     386 ..      42      86 ..      18     121 .. 0.77
   2 !   17.1   0.0     5e-06   0.00032     469     503 ..     163     197 ..     141     221 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.1e-07
    TIGR02203 343 gddrealdsislkveaGevvalvGrsGsGkstlvnllp.RFyepd 386
                   d+r++l++++l++++G +  l+G  GsGkstl+++++ R + ++
  MMETSP1061-20121228|15997_1  42 HDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAgRHLTQQ 86 
                  4789*******************************9973554444 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 5e-06
    TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDn 503
                   +Ls GqR R+ i   l++   iL+LDe t++LD 
  MMETSP1061-20121228|15997_1 163 HQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDV 197
                  68*******************************96 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.1   1.9e-12   1.2e-10      15     230 ..      45     254 ..      36     261 .. 0.75

  Alignments for each domain:
  == domain 1    score: 39.3 bits;  conditional E-value: 1.9e-12
    TIGR03411  15 fkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelaker..svvvvehDmefvrelaekvtvlh.eGkvlaeGsldevq 230
                   + l++l+l++++g+  ++iG+nG+Gk+tll +i+G+   ++ +v++ g     l+  + ++l   R + +     +   +   ++ l ad  v++++ ++l+++  er +e+++++g++   +++  +Ls Gq+ +++i + lv+  k+lllDe ++ +    ++   ++l + ++er  +++   h  + +++ a+++  l+ +Gk   +G+++ ++
  MMETSP1061-20121228|15997_1  45 RNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRH-LTQQEVKVLG-----LNSFRETKLNFHRAYLNCDWGMTSIAFVGASVPLCADIPVYKMM-EKLQNSYPERRDELVRMLGID--LNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERgaTILYATHIFDGLDDWATHLFYLNnKGKCGWQGEMNALE 254
                  56799*******************************98.4444555555.....44555555555566666555555555666677788888888876.89999999999***9998876..6778899**************************9999988888877777665554432256666777777777777776664257777777776665 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00046      0.03       3      42 ..      55      93 ..      53     112 .. 0.80
   2 !   26.8   0.0   1.2e-08   8.1e-07     111     175 ..     162     227 ..     143     245 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00046
    TIGR03771  3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagk 42
                 +++G    l+G nG+Gk+tllr i g    ++ +vkv g 
  MMETSP1061-20121228|15997_1 55 LKTGSRCLLIGANGSGKSTLLRIIAGRHL-TQQEVKVLGL 93
                 567777889*************9988655.7778887765 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 1.2e-08
    TIGR03771 111 vGelsGGqrqrvlvaralavkpslllldepftGldlpsq.ellvelfeelagegtailmtthdlae 175
                  + +ls Gqr+rv +   l    ++lllde  t ld+  + +ll  l++e  + g +il +th +  
  MMETSP1061-20121228|15997_1 162 MHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRqDLLKWLVKESDERGATILYATHIFDG 227
                  679***************9999*************9876155666788888899********6655 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.6e-06    0.0001      12      68 ..      43      99 ..      34     109 .. 0.86
   2 !   17.3   0.0   7.8e-06   0.00051     138     203 ..     158     225 ..     147     259 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.6e-06
    TIGR00972 12 gekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegk 68
                  e+++l+++nl +k+ +   liG  G+Gkstllr +   + + +ev++ G   ++++
  MMETSP1061-20121228|15997_1 43 DERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQQEVKVLGLNSFRET 99
                 6789*******************************9988888888888776666655 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 7.8e-06
    TIGR00972 138 lkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekiee.liqeLkkk.ytivivthnm 203
                  l+ +  +Ls Gq++r+ i  +l    ++lLlDe t +LD    + + + l++e  ++  ti+  th +
  MMETSP1061-20121228|15997_1 158 LNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKwLVKESDERgATILYATHIF 225
                  5566789***************9999*************99998877625556555568898888865 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   6.8e-07   4.4e-05      10      51 ..      41      82 ..      35      92 .. 0.90
   2 !   13.8   0.0   4.9e-05    0.0032     119     203 ..     145     227 ..     115     244 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 6.8e-07
    TIGR02633 10 kfggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvy 51
                 + ++ + l+n++l+l++G    l G nG+Gkstl+++++g +
  MMETSP1061-20121228|15997_1 41 QHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRH 82
                 5677789*******************************9865 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 4.9e-05
    TIGR02633 119 lrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilld.iirdlkakgvacvyishklee 203
                   r +el+r l +d + +     +l  Gq++ v+i   l +  ++l+lde ++sl     + ll+ ++++  ++g + +y +h ++ 
  MMETSP1061-20121228|15997_1 145 ERRDELVRMLGIDLNWHM---HQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKwLVKESDERGATILYATHIFDG 227
                  567778888877766554...59999****************************9988777776489************9998775 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.1   5.8e-07   3.8e-05      40      72 ..      48      80 ..      32      96 .. 0.89
   2 !   15.0   0.2   2.9e-05    0.0019     159     226 ..     159     226 ..     134     231 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 5.8e-07
    TIGR03415 40 vadasldveeGeilvlmGlsGsGkssllravng 72
                  ++ +l+++ G  ++l+G  GsGks+llr + g
  MMETSP1061-20121228|15997_1 48 LHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAG 80
                 5899**************************987 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 2.9e-05
    TIGR03415 159 dkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdld 226
                  + ++++ls G ++rv +   +    +ill+de  ++ld  +r+ l   l++  ++   ti++ +h +d
  MMETSP1061-20121228|15997_1 159 NWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFD 226
                  446899********************************************************999665 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   8.8e-05    0.0057       9      50 ..      41      82 ..      36     100 .. 0.87
   2 !   19.1   0.0   1.3e-06   8.6e-05     422     489 ..     159     226 ..     152     250 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8.8e-05
    TIGR03269  9 kfdglevlknisleleeGevlGilGksGaGksvllhllrGld 50
                 + d+ +vl+n++l+l+ G    ++G  G+Gks ll+++ G +
  MMETSP1061-20121228|15997_1 41 QHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRH 82
                 568899*******************************99965 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 1.3e-06
    TIGR03269 422 dklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmd 489
                  +   ++ls+G+r rv +   l++  +i++lde t ++d   ++++ + ++k  +e + t +  +h  d
  MMETSP1061-20121228|15997_1 159 NWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATHIFD 226
                  56679**************************************************9999999999777 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0     7e-06   0.00046     337     395 ..      24      86 ..      15     104 .. 0.77
   2 !   12.4   0.1   0.00014     0.009     461     528 ..     157     223 ..     143     240 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 7e-06
    TIGR01194 337 lelkdvrysykdv....essegfalGpidlriasGelvyivGenGcGkstliklllGlyipqe 395
                  +++kd+ + y ++    +  e   l  ++l+++ G    ++G nG Gkstl++++ G +  q+
  MMETSP1061-20121228|15997_1  24 IDVKDLTFGYSSTgaldQHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQQ 86 
                  666666665554411224456677999******************************988775 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 0.00014
    TIGR01194 461 dlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvish 528
                  dln+    +ls Gqr+r+ ++   +    +lllde ++  d   ++ + + l+ +   rG til  +h
  MMETSP1061-20121228|15997_1 157 DLNWH-MHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDERGATILYATH 223
                  67777.789*******************************************************9999 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0     1e-09   6.8e-08      23     197 ..      53     223 ..      37     242 .. 0.74

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 1e-09
    TIGR02323  23 f.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsrelellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavgarhyGkiraaakwlekveidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth 197
                  + l  G    ++G  GsGkstll  +a+r l+++  v+    + ++e  +l     r  l ++wG+      G  + + a   +  +++   +  y ++r++    + + id    + +++s G ++r+qi   lv   +++++ e t  l v v+  ll  l +   e g +++  th
  MMETSP1061-20121228|15997_1  53 LtLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQQE-VKVLGLNSFRET-KL--NFHRAYLNCDWGMTSIAFVGASVPLCADIPVY-KMMEKLQNSYPERRDELV--RMLGIDL-NWHMHQLSDGQRRRVQIMLGLVRPFKILLLdEITTSLdVCVRQDLLkWLVKESDERGATILYATH 223
                  556777778899****************9877664.444444434442.23..345678899*****999999887777776665.566667889999998765..5556666.45889*****************9999999978888887777766654333333344555555666 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   9.6e-06   0.00063      69     813 ..      40      82 ..      14     110 .. 0.60
   2 !    9.1   0.0   0.00071     0.046     211     956 ..     166     219 ..     158     251 .. 0.65

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 9.6e-06
    TIGR00956  69 keskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiasktegfkkgkeskitYdglskeeikkhyrgdvvYsaetdvHlpsltvketLdfaarlktpqnRvkgvsreeyakkladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadkakeyFekmGfkCpdRqttadFLtsltspkereikkgyekkvprtakefekywrnspeyaelekeideylerveeekekeaikesavakkskrtrkkskytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyvrggalffallfnafsslleiaslyearpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesllvnefharefecsqlvPsgsgyenlsseekvCalvgaepgedyvdgdeylklsfdyknkhkWrnlgiilafvvffvvvvilllefnkgakkkgeilvfkkgelkkakkkeeeseskkndieagevlkstdltdeseevneeveeekesgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv 813
                  +++                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ++r++L++++  +k G+   L+Ga G Gk tLl ++a+R 
  MMETSP1061-20121228|15997_1  40 DQH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRH 82 
                  344..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................5555555555555555555555555555555555555553 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.00071
    TIGR00956 211 sGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGkadkakeyFekmGfkCpdRqttadFLtsltspkereikkgyekkvprtakefekywrnspeyaelekeideylerveeekekeaikesavakkskrtrkkskytvsfsqqvkyilaRellrlkgdasvtlikvvgniimalilssvfynlekntsdfyvrggalffallfnafsslleiaslyearpivekhrkyalyhPsadalasilselPvkliesvvfniilyflvnlrreagrFffylLilflatlvmshlFrsigavtktlseAmtlaallllalslytgfviprkeilkWskWiayvnPlayafesllvnefharefecsqlvPsgsgyenlsseekvCalvgaepgedyvdgdeylklsfdyknkhkWrnlgiilafvvffvvvvilllefnkgakkkgeilvfkkgelkkakkkeeeseskkndieagevlkstdltdeseevneeveeekesgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkldssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqail 956
                  s G+r+Rv i   lv + ki+++D++t+ LD     +++k l +  +                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      G +il
  MMETSP1061-20121228|15997_1 166 SDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESDER--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATIL 219
                  5566666666666666666666666666666655555555544443333....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................44444 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.5e-07   1.7e-05    1217    1280 ..      23      93 ..      13     124 .. 0.84
   2 ?    3.2   0.0     0.037       2.4     549    1397 ..     165     209 ..     126     272 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.5e-07
    TIGR01271 1217 qmtvkdltakyteag.......ravlqdlsfsveagqrvgllgrtgsgkstllsallrllstegeiqidgv 1280
                    ++vkdlt  y+++g       r vl++l +++++g r  l+g  gsgkstll  +     t+ e+++ g+
  MMETSP1061-20121228|15997_1   23 AIDVKDLTFGYSSTGaldqhdeRNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQQEVKVLGL 93  
                   478999999998876555555589******************************99999999999999887 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.037
    TIGR01271  549 lsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehlkkadkilllhegscyfygtfselqakkpdfsskllgleafdslsaerrnsiltetlrrvsvesdaalvsysetkkqsfkqpppefaekrksslilnpiasarkfslvqkapskaqateiedavselserklslvpedeqgeeslprsnvfksglqlqarrrqsvlallthssrgenkreklrasvrkvslisqanelaseldiysrrlskdssleiseeineedlkecfadeeesvnatttwntylryittnrnlvfvlililviflaevaaslvglflisdlasatnsdkqdsanasspdsskaviitstsayyilyiyvgvadsllalgflrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdliqlllivlgaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridiifvlffiavvfiaiatndegegevgiiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrllstegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlk 1397
                   ls gqr r+ +   + +   + lld   + ldv   +++++                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      +k
  MMETSP1061-20121228|15997_1  165 LSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKW------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LVK 209 
                   455555555555555555555555555555555555544432....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................333 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   1.7e-08   1.1e-06     943    1124 ..      45     229 ..      38     243 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 1.7e-08
    TIGR01257  943 rpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkd.ietnldavrqslgmc.pqhnilfhhltv..aehilfyaqlk..grsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyr..sgrtiimsthhmdead 1124
                   r  +  ln+t+       ++g ng+gk+t l i++g         ++g +   et+l+  r  l        i f   +v  +  i +y  +    +s+ e + e+  ml    +    n   ++ls g +r++ + + +v   k+++lde t+ +d   r+ +   l+k     g ti+ +th +d  d
  MMETSP1061-20121228|15997_1   45 RNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGRHLTQQEVKVLGLNSfRETKLNFHRAYLNCDwGMTSIAFVGASVplCADIPVYKMMEklQNSYPERRDELVRMLG---I--DLNWHMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKWLVKESdeRGATILYATHIFDGLD 229 
                   6778899*****************************866555555555444169****99998864314566777655542267788887664224688899999888884...3..34666789****************************************9999975125889******999766 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   1.5e-07     1e-05     467     501 ..      46      80 ..      41      88 .. 0.92
   2 ?    0.9   0.0      0.38        25     579     638 ..     159     223 ..     145     247 .. 0.64

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 1.5e-07
    TIGR00954 467 vlieeLsfevksGnhlLiiGPnGcGKsslfRilge 501
                   ++++L++ +k G+  L+iG nG GKs l Ri+++
  MMETSP1061-20121228|15997_1  46 NVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAG 80 
                  57899****************************97 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.38
    TIGR00954 579 dW.kdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklye....lakevgitllsvsh 638
                  +W +  Ls G++ R+ +   +    k  +LDE t  + v v + l +    +  e g t+l  +h
  MMETSP1061-20121228|15997_1 159 NWhMHQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVRQDLLKwlvkESDERGATILYATH 223
                  564789*********986555444488999****9999888877765100033344555555555 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.011      0.71     335     382 ..      24      79 ..       4     104 .. 0.74
   2 !   13.2   0.0   8.3e-05    0.0054     470     506 ..     163     199 ..     154     241 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.011
    TIGR01192 335 vefrdisfefans........sqgvrdvsfeakagqtvaivgptgagkttlinllq 382
                  ++ +d++f+++ +        ++ ++++ ++ k+g    ++g  g+gk+tl+ ++ 
  MMETSP1061-20121228|15997_1  24 IDVKDLTFGYSSTgaldqhdeRNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIA 79 
                  6666666666544222111113457999***********************98875 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 8.3e-05
    TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvet 506
                   +ls g+r+r+ i   +++   il+lde t++ldv  
  MMETSP1061-20121228|15997_1 163 HQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCV 199
                  69********************************965 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0    0.0041      0.27     629     684 ..      16      78 ..       3      97 .. 0.66
   2 !   15.1   0.1   9.5e-06   0.00062    1300    1486 ..      46     231 ..      40     245 .. 0.70

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0041
    TIGR00957 629 ikdgegnsitvknatftwa.......rdepptlngltlsipegalvavvgqvgcgkssllsal 684
                  ikd + n+i vk+ tf ++       +de   l++l+l++  g+   ++g  g gks+ll  +
  MMETSP1061-20121228|15997_1  16 IKDYGPNAIDVKDLTFGYSstgaldqHDERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRII 78 
                  666666777777777766422222223566777778888888888888888888888777654 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 9.5e-06
    TIGR00957 1300 lvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglnia.kiglhdlrfklti.ipqdpvlfsgslrmnldpfsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdlet.dnliqstirtqfed.ctvltiahrlntimdy 1486
                    vl++ln+t++ g +  ++g  g+gks+l l ++     ++ e+++ gln   +  l   r  l        + f g+       +  y   e           ++v  l  +l+++      +ls gqr+ v +   l+r  kil+lde t+++d+   ++l++  ++   e   t+l  +h ++ + d+
  MMETSP1061-20121228|15997_1   46 NVLHNLNLTLKTGSRCLLIGANGSGKSTL-LRIIAGRHLTQQEVKVLGLNSFrETKLNFHRAYLNCdWGMTSIAFVGASVPLCADIPVYKMMEKLQNSYPERRDELVRMLGIDLNWHM----HQLSDGQRRRVQIMLGLVRPFKILLLDEITTSLDVCVrQDLLKWLVKESDERgATILYATHIFDGLDDW 231 
                   589999*******************9987.5566667788999999999964133333334333331334566666654333333444544444444444566777888877777765....68********************************97526788887776655426777777777777766 PP

>> TIGR00611  recf: DNA replication and repair protein RecF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0026      0.17      14      43 ..      48      78 ..      37      86 .. 0.79
   2 ?    3.8   0.0     0.085       5.5     305     330 ..     185     210 ..     172     242 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0026
    TIGR00611 14 yeevdlelspgvn.vlvGeNgqGKtnlleai 43
                 +++++l+l+ g   +l+G Ng+GK  ll+ i
  MMETSP1061-20121228|15997_1 48 LHNLNLTLKTGSRcLLIGANGSGKSTLLRII 78
                 3678899988877699**********99876 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.085
    TIGR00611 305 illlDDvaseLDeqrreaLaelleek 330
                  illlD +   LD   r++L++ l ++
  MMETSP1061-20121228|15997_1 185 ILLLDEITTSLDVCVRQDLLKWLVKE 210
                  9************9999998866544 PP

>> TIGR03924  T7SS_EccC_a: type VII secretion protein EccCa
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   0.00016      0.01     450     470 ..      58      78 ..      55      87 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00016
    TIGR03924 450 GpHGLliGaTGSGKSelLrtl 470
                  G   LliGa GSGKS+lLr +
  MMETSP1061-20121228|15997_1  58 GSRCLLIGANGSGKSTLLRII 78 
                  7788**************954 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0018      0.11     619     655 ..      44      80 ..      34     100 .. 0.83
   2 ?    1.1   0.0      0.27        18     822     892 ..     158     226 ..     149     240 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0018
    TIGR00630 619 kennlkdidvsiplglltvitGvsgsGkstLindiLv 655
                  ++n l++++++++ g   ++ G  gsGkstL+  i  
  MMETSP1061-20121228|15997_1  44 ERNVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAG 80 
                  467799*************************986654 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.27
    TIGR00630 822 lGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLle.vlqrlvdkGntvvviehnld 892
                  l   +  Ls G  +rv++   L +  +   + +lDe tt L +   + Ll+ ++++  ++G t++   h +d
  MMETSP1061-20121228|15997_1 158 LNWHMHQLSDGQRRRVQIMLGLVRPFK---ILLLDEITTSLDVCVRQDLLKwLVKESDERGATILYATHIFD 226
                  555678899999999999999998865...889********9998889998345666778999998888666 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00042     0.028     349     384 ..      46      81 ..       5     115 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00042
    TIGR03925 349 sdlapvaldfaeephllvlGdsesGktallraiaee 384
                  + l+ + l +++ +  l +G+++sGk++llr ia +
  MMETSP1061-20121228|15997_1  46 NVLHNLNLTLKTGSRCLLIGANGSGKSTLLRIIAGR 81 
                  356677777888888999999999999999999854 PP

>> TIGR03496  FliI_clade1: flagellar protein export ATPase FliI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00063     0.041     130     170 ..      51      93 ..      46     109 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00063
    TIGR03496 130 alltvgkGqrlglfagsGvGKsvLlgmla..rateadvvvvaL 170
                    lt+ +G r  l+ + G GKs+Ll ++a  + t+ +v+v++L
  MMETSP1061-20121228|15997_1  51 LNLTLKTGSRCLLIGANGSGKSTLLRIIAgrHLTQQEVKVLGL 93 
                  5589999*********************943358999999998 PP

>> TIGR02546  III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00082     0.053     141     179 ..      53      93 ..      47     104 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00082
    TIGR02546 141 ltvgeGqRiGifaeaGvGkstLlsmiarg..akadvivlaL 179
                  lt+ +G R  + ++ G+GkstLl  ia    ++ +v vl+L
  MMETSP1061-20121228|15997_1  53 LTLKTGSRCLLIGANGSGKSTLLRIIAGRhlTQQEVKVLGL 93 
                  8999*********************9976456778888877 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.1   0.00072     0.047      18      46 ..      49      76 ..      39      79 .. 0.85
   2 ?   -3.4   0.2       7.7     5e+02     323     338 ..     267     282 ..     247     300 .. 0.37

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00072
    TIGR03185 18 qevdLsvssekpiiLlgglNGaGKTTlLd 46
                 ++++L+ ++    +L+g+ NG+GK TlL 
  MMETSP1061-20121228|15997_1 49 HNLNLTLKTGSRCLLIGA-NGSGKSTLLR 76
                 899*******99999986.********96 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 7.7
    TIGR03185 323 evleerdkellelLpk 338
                  ++l+  d++l + L++
  MMETSP1061-20121228|15997_1 267 KMLAVADHWLRKELEE 282
                  2222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      228  (0.0555826); expected 82.0 (0.02)
Passed Vit filter:                        98  (0.0238908); expected 4.1 (0.001)
Passed Fwd filter:                        63  (0.0153584); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              63  [number of targets reported over threshold]
# CPU time: 0.92u 0.21s 00:00:01.13 Elapsed: 00:00:00.70
# Mc/sec: 648.63
//
Query:       MMETSP1061-20121228|15993_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   26.7   0.0    2.4e-06   25.5   0.0    1.6  1  TIGR00229 sensory_box: PAS domain S-box protein
  ------ inclusion threshold ------
      0.027   10.4   0.0      0.042    9.8   0.0    1.2  1  TIGR01702 CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   1.2e-09   2.4e-06      15     105 ..     247     338 ..     240     358 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 1.2e-09
    TIGR00229  15 pdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedre.evrerierrlegerepvseerrvkrkdGseiwvevsvspird.agg 105
                  p+ +  + +  ++++vN a+e + GY+++e+iGrn+  l+   + + e++  + r l+ e+   +   + ++k+G+e+  +++++ i+  ++g
  MMETSP1061-20121228|15993_1 247 PVIVTSAESPFRVVDVNGAWEGLCGYRRDEAIGRNLGSLLQGSETDiETANNAVRSLR-EIGFSEAVLTNYTKNGREFQNHLKLGKIPAtDSG 338
                  5566666777899*************************66444333144444444444.555555544447********99999999876555 PP

>> TIGR01702  CO_DH_cata: carbon-monoxide dehydrogenase, catalytic subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   2.1e-05     0.042      47     104 ..     255     311 ..     250     336 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 2.1e-05
    TIGR01702  47 GPCRikikekkerGvCGadadtivaRnllrkvlaGtaayvehaeeaaralkalaegkt 104
                   P R+   ++  +G+CG  +d  + Rnl    l G+++ +e+a++a r+l++++  ++
  MMETSP1061-20121228|15993_1 255 SPFRVVDVNGAWEGLCGYRRDEAIGRNLGS-LLQGSETDIETANNAVRSLREIGFSEA 311
                  6778777788899**************985.789******************987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.18s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1794.07
//
Query:       MMETSP1061-20121228|16001_1  [L=537]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-13   46.4   0.0    1.2e-12   45.8   0.0    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    4.7e-10   36.3   1.7    7.8e-10   35.6   1.2    1.3  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.8   0.0   5.7e-16   1.2e-12       2     125 ..     185     308 ..     184     315 .. 0.76

  Alignments for each domain:
  == domain 1    score: 45.8 bits;  conditional E-value: 5.7e-16
    TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdife.effgggggsgrr.rskarrgedlevelel 125
                  +Y+ L ++ d ++++i++ Y  +a+ky P r+ ++++a + f+ei++A+ +L+++  r++YD++g+a+l ++  + +++ e++ +        +f+ e f++++g+  + +s+ar g+++e++l+l
  MMETSP1061-20121228|16001_1 185 FYDKLNLDCDVDTDTIQRRYFVVARKYAPTRCGANRKAAAEFREIKQAHSILTNPILREKYDRVGRAHLWDEDDS-DDESEDEVD-PRMLYTLLFGsEKFHDHIGALAKvTSSARTGNEVETNLTL 308
                  8*******************************************************************9986544.333332222.1112223333123444444444457788888888887766 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   1.2   3.8e-13   7.8e-10       4      78 ..     185     260 ..     181     266 .. 0.93

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 3.8e-13
    TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkraryDkyGhDGvDreddld 78 
                  +y+ L++d D d + i++ +  +a+ky P r  a   aa  f+ei  a+ +L+nP  r++yD+ G   + +edd d
  MMETSP1061-20121228|16001_1 185 FYDKLNLDCDVDTDTIQRRYFVVARKYAPTRCGAnRKAAAEFREIKQAHSILTNPILREKYDRVGRAHLWDEDDSD 260
                  799****************************999899****************************99998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (537 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.19s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 2362.60
//
Query:       MMETSP1061-20121228|16028_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.18s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 2218.43
//
Query:       MMETSP1061-20121228|16033_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 2010.89
//
Query:       MMETSP1061-20121228|16040_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-51  172.1  17.3    4.1e-51  171.8  12.0    1.1  1  TIGR00861 MIP: MIP family channel proteins


Domain annotation for each model (and alignments):
>> TIGR00861  MIP: MIP family channel proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.8  12.0   9.9e-55   4.1e-51       1     224 []       9     249 ..       9     249 .. 0.83

  Alignments for each domain:
  == domain 1    score: 171.8 bits;  conditional E-value: 9.9e-55
    TIGR00861   1 aeflgtlllvffgvgvvlvvnvakavsavgg.....gtllevalafglavallvyavggiSGahlNPAvTlallvlrkfplkkvvvYivaQliGailgaallylltkkal.......egdlavaes..........aaaGalavfpk......lssvqalvvefiltaiLvlvilaltdkrealssgglaplaiGllvvlivlslgpltgtamNpARslGpalvaal...vgfesyfwvylvgPivGailgalvY 224
                  aefl+t l+v+ g+g++++  +     +vgg     g l+++a+afg+++ +l+y +g+iSG+h+NPAvT a+++l+++++   +vYivaQ+iGai+ga++l +++ + +        ++l +  +           + G             +s + a++ e+++t +Lv+++l ++ ++  +  g  ap+aiG +v+l++++l+p+tg+++NpARslGp +v+ +     ++  +wv+  +P+vG++l+a  Y
  MMETSP1061-20121228|16040_1   9 AEFLATALFVWSGCGAAVSSFK-----WVGGgttdpGALISIAIAFGFTISVLAYGIGHISGGHINPAVTTAMMALGEIDIVSGIVYIVAQCIGAIFGALILWGCVTSLTdncadtpDSNLCA--TslvgdkygpaFQLG------AnslgddVSQGCAFLLELVGTYLLVITVLNSAVHKGSA-AGNAAPIAIGWSVMLAHIVLIPYTGCGINPARSLGPMIVDLFggvNVWKRGVWVFYTAPFVGGLLAAATY 249
                  8****************98644.....3333344569*********************************************************************99998888865223222..224553333322333......1345667***********************99855554.6669*********************************998862213455579***************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1446.60
//
Query:       MMETSP1061-20121228|16076_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.7    3.7   9.7        4.7    3.7   6.7    1.0  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase


Domain annotation for each model (and alignments):
>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   6.7    0.0011       4.7     209     247 ..      10      48 ..       1      55 [. 0.33

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0011
    TIGR02927 209 epkeeekpekseakseekpeaaepkaekkeepkpepkae 247
                  e +e e+ +++++k + + + ++pka +k  pkp+++++
  MMETSP1061-20121228|16076_1  10 EKAETETEADADTKKKTTKAKPKPKATPKATPKPKSAED 48 
                  111222222222222222222333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.07u 0.17s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 389.02
//
Query:       MMETSP1061-20121228|16083_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1729.75
//
Query:       MMETSP1061-20121228|16100_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.9    5.1  23.7        4.4    5.5   0.1    6.1  7  TIGR02976 phageshock_pspB: phage shock protein B


Domain annotation for each model (and alignments):
>> TIGR02976  phageshock_pspB: phage shock protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   0.1    0.0016       6.7      36      65 ..      96     124 ..      89     133 .. 0.78
   2 ?   -3.6   0.1      0.78   3.2e+03      32      49 ..     152     169 ..     146     173 .. 0.65
   3 ?    0.9   0.1     0.031   1.3e+02      50      66 ..     208     224 ..     194     233 .. 0.80
   4 ?    0.7   0.0     0.036   1.5e+02      28      59 ..     235     266 ..     228     275 .. 0.66
   5 ?    4.7   0.2    0.0019         8      28      54 ..     290     316 ..     284     318 .. 0.84
   6 ?    5.5   0.1    0.0011       4.4      41      63 ..     330     352 ..     326     359 .. 0.93
   7 ?    1.2   0.1     0.024     1e+02      34      61 ..     369     396 .]     361     396 .] 0.85

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0016
    TIGR02976  36 lstddlalLeelsekakrleeRidtLEriL 65 
                  + ++d + L  l++ a rl++ ++tLE+ L
  MMETSP1061-20121228|16100_1  96 AKDSDRSSLPPLERLA-RLQQEVETLETEL 124
                  5677888888888776.9*********855 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.78
    TIGR02976  32 taaslstddlalLeelse 49 
                  ta+s+   ++  L+ + +
  MMETSP1061-20121228|16100_1 152 TASSAHVTEQDDLTRMIQ 169
                  566666677777776665 PP

  == domain 3    score: 0.9 bits;  conditional E-value: 0.031
    TIGR02976  50 kakrleeRidtLEriLd 66 
                    + leeR   LEr+L 
  MMETSP1061-20121228|16100_1 208 PTTTLEERLLNLERVLG 224
                  45679*********996 PP

  == domain 4    score: 0.7 bits;  conditional E-value: 0.036
    TIGR02976  28 skrktaaslstddlalLeelsekakrleeRid 59 
                  s+++t++s+s+++ + L +  e++++l + +d
  MMETSP1061-20121228|16100_1 235 SQSGTSSSVSSNNYKSLLHRLEDMEQLVATVD 266
                  56677777777666666555566666655554 PP

  == domain 5    score: 4.7 bits;  conditional E-value: 0.0019
    TIGR02976  28 skrktaaslstddlalLeelsekakrl 54 
                   ++k  a+  ++d +++++l++++  l
  MMETSP1061-20121228|16100_1 290 ARNKLTATYKKEDSKMIQQLYQQMIDL 316
                  5778888999*************9666 PP

  == domain 6    score: 5.5 bits;  conditional E-value: 0.0011
    TIGR02976  41 lalLeelsekakrleeRidtLEr 63 
                  l++L++l+++a     R + LEr
  MMETSP1061-20121228|16100_1 330 LQQLSNLHQQASTFGTRLQELER 352
                  799*******************8 PP

  == domain 7    score: 1.2 bits;  conditional E-value: 0.024
    TIGR02976  34 aslstddlalLeelsekakrleeRidtL 61 
                  a+l+t  ++ +  ++ ++k+l+e   +L
  MMETSP1061-20121228|16100_1 369 ATLQTTVAQNIVAMETNMKKLDEKLGAL 396
                  678889999999**********987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       372  (0.0906875); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2177.82
//
Query:       MMETSP1061-20121228|16150_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|16171_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1061-20121228|16160_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.4e-133  441.0   1.3     9e-133  440.7   0.9    1.0  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    2.2e-80  268.6   0.5      3e-80  268.2   0.3    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
    2.1e-74  249.0   0.2    2.9e-74  248.5   0.1    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.1e-58  197.0   1.2    1.4e-58  196.7   0.8    1.1  1  TIGR03689 pup_AAA: proteasome ATPase
    1.2e-07   28.9   0.0    1.8e-07   28.4   0.0    1.2  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    3.7e-07   26.9   0.0      6e-07   26.2   0.0    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    1.3e-06   25.4   3.2    9.1e-05   19.4   0.0    2.5  3  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    1.6e-06   25.2   0.0    2.7e-06   24.5   0.0    1.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    3.9e-06   23.4   0.0    6.2e-06   22.8   0.0    1.5  1  TIGR00763 lon: ATP-dependent protease La
    8.9e-06   22.6   0.5    0.00045   17.0   0.0    2.6  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
    0.00024   18.1   0.1    0.00074   16.5   0.0    1.8  2  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0011   15.4   0.0      0.002   14.5   0.0    1.3  1  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
     0.0015   14.6   0.3      0.033   10.2   0.0    2.4  2  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
     0.0025   15.2   0.0     0.0057   14.0   0.0    1.6  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
     0.0031   15.0   0.0      0.006   14.0   0.0    1.4  1  TIGR00678 holB: DNA polymerase III, delta' subunit
     0.0046   13.4   0.0     0.0069   12.8   0.0    1.2  1  TIGR00368 TIGR00368: Mg chelatase-like protein
     0.0047   14.0   0.1     0.0095   13.0   0.1    1.4  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0086   12.5   0.1      0.082    9.3   0.0    2.0  2  TIGR00764 lon_rel: putative ATP-dependent protease
  ------ inclusion threshold ------
      0.011   12.2   0.0      0.018   11.4   0.0    1.3  1  TIGR02902 spore_lonB: ATP-dependent protease LonB
      0.021   11.9   0.0      0.035   11.1   0.0    1.3  1  TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
      0.024   12.5   7.0        1.6    6.5   0.0    2.2  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
          2    4.6   9.2        0.4    6.9   0.0    2.5  3  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.7   0.9  4.8e-135    9e-133       6     364 .]      53     413 ..      48     413 .. 0.97

  Alignments for each domain:
  == domain 1    score: 440.7 bits;  conditional E-value: 4.8e-135
    TIGR01242   6 ekirkledekkllekekirlereverlrselerlrsppllvavvvevlddervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkalev.eerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakekapsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdpr.gnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavekvl 364
                  ++ r++e+  k + ++   l +  ++  ++l+ l+s   +++ v++ ld+er +vk+s+Gp++vv + + + + +lkpG+rval+  tl+i+ vlp e dp+v  ++  ee   vs+ diGGl++q+re+re++elpl +pelf +vGi+ pkGvllyGppGtGktlla+a+a+++natf++vv+s +v kyiGe ar++re+f +ak+  p++if+deidai+  r  + ts dre+qrtll+ll ++dGfd   g+vk++ atnr+dildpallrpGr+dr ie+p p++  rleilkih+ ++  ++d+d e + kl++G  Gad++ ++teaG+fair +rd+v  edf+ka  k+l
  MMETSP1061-20121228|16160_1  53 REHREIETRLKRMREDVKGLGKRYQKTEDDLSALQSVGQIIGDVLKRLDNERFIVKASSGPRYVVGCRTRLSHGKLKPGTRVALDMTTLTIMRVLPREVDPTVFHMQAsEEDGGVSFADIGGLNEQIRELREVIELPLTNPELFTRVGIKAPKGVLLYGPPGTGKTLLARALASNINATFLKVVASAIVDKYIGESARVIREMFGFAKDHEPCVIFMDEIDAIGGSRFSEGTSADREIQRTLLELLNQMDGFDDTgGQVKMVMATNRPDILDPALLRPGRLDRKIEIPEPNETQRLEILKIHAANITKRGDIDYESVVKLADGLNGADMRNVCTEAGLFAIRSDRDYVLEEDFMKAARKIL 413
                  567899999999999*9*****************************************************************************************97255679******************************************************************************************************************************************876279***************************************************************************************************9985 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  268.2   0.3   1.6e-82     3e-80      46     302 ..     160     418 ..     155     426 .. 0.96

  Alignments for each domain:
  == domain 1    score: 268.2 bits;  conditional E-value: 1.6e-82
    TIGR01241  46 leeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakknaPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetneg.vivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrviaGlek 302
                  ++ee+  v+f+d+ G++e+ +el e+++  L np+ ft++G k PkGvll+GpPGtGktLla+a+a + +  f+++  s  v+ ++G  a  +r++f  ak + Pc+if+DeiDa+G +r    +++  e ++tL  lL +mDGf+++ g v ++ atnrpd+LD+aLlrPGr+Dr++ + +P+ ++r eilk+ha +++   ++d ++v + + G+ Gad+ n++ ea l+a r++++ v  +++ +a  +++  ++ 
  MMETSP1061-20121228|16160_1 160 ASEEDGGVSFADIGGLNEQIRELREVIELpLTNPELFTRVGIKAPKGVLLYGPPGTGKTLLARALASNINATFLKVVASAIVDKYIGESARVIREMFGFAKDHEPCVIFMDEIDAIGGSRFSEGTSADREIQRTLLELLNQMDGFDDTGGqVKMVMATNRPDILDPALLRPGRLDRKIEIPEPNETQRLEILKIHAANITKRGDIDYESVVKLADGLNGADMRNVCTEAGLFAIRSDRDYVLEEDFMKAARKILENKKL 418
                  4677889*********************879******************************************************************************************99999999****************99877477999************************************************************************************************9977655 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.5   0.1   1.5e-76   2.9e-74     446     700 ..     163     420 ..     133     426 .. 0.89

  Alignments for each domain:
  == domain 1    score: 248.5 bits;  conditional E-value: 1.5e-76
    TIGR01243 446 evpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarqaapaiifldeidaiapargadlsea..vtdrivnqllteldgleens.dvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekeilkdlkvkk 700
                  e   v + diggl+e  +elre +e pl ++e+f ++gi+ pkgvll+gppgtgktlla+a+a++ +a f+ v    i+ k++ges + ire+f  a++  p++if+deidai  +r ++ ++a    +r + +ll ++dg++++  +v ++ atnrpdildpallrpgrldr i +p p+e  rlei+kih+ +++   d+d e + k ++g  gad+  v+ ea l a+r     v +e + +  ++il++ k++ 
  MMETSP1061-20121228|16160_1 163 EDGGVSFADIGGLNEQIRELREVIELPLTNPELFTRVGIKAPKGVLLYGPPGTGKTLLARALASNINATFLKVVASAIVDKYIGESARVIREMFGFAKDHEPCVIFMDEIDAIGGSRFSEGTSAdrEIQRTLLELLNQMDGFDDTGgQVKMVMATNRPDILDPALLRPGRLDRKIEIPEPNETQRLEILKIHAANITKRGDIDYESVVKLADGLNGADMRNVCTEAGLFAIRSDRDYVLEEDFMKAARKILENKKLES 420
                  456799************************************************************************************************************99955544432345788889********99862577899*******************************************************************************99988888888888888888877765 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  196.7   0.8   7.5e-61   1.4e-58     104     379 ..      87     356 ..      37     420 .. 0.86

  Alignments for each domain:
  == domain 1    score: 196.7 bits;  conditional E-value: 7.5e-61
    TIGR03689 104 ervGeiv.tlkevlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavpkseveel....vleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrPvvvffdemdslfrtrGs.Gvssdvet.tvvPqllaeldGvesle.nviviGasnredlidPailrPGrldvkirierPdaeaaadilakylt 379
                  ++vG+i   + + ld++r +v + ++  +vv     l++ kl++G ++++d+ +   ++ +p++   ++    + ee   v++adiGGl++qi ++r+ +elP++++el+++ ++k+PkGvllyGPPG+Gktl+a+a+a+ +          ++ fl++    +++ky+Ge+ r ir +f  a    ++ +P v+f+de+d++   r s G s+d e    +  ll ++dG ++    v ++ a+nr d++dPa+lrPGrld ki i  P++++  +il+ + +
  MMETSP1061-20121228|16160_1  87 QSVGQIIgDVLKRLDNERFIVKASSGPRYVVGCRTRLSHGKLKPGTRVALDMTTLTIMRVLPREVDPTVfhmqASEEDGGVSFADIGGLNEQIRELREVIELPLTNPELFTRVGIKAPKGVLLYGPPGTGKTLLARALASNI----------NATFLKVVASAIVDKYIGESARVIREMFGFA----KDHEPCVIFMDEIDAIGGSRFSeGTSADREIqRTLLELLNQMDGFDDTGgQVKMVMATNRPDILDPALLRPGRLDRKIEIPEPNETQRLEILKIHAA 356
                  6778865378999****************************************999999999875544311125689999*******************************************************9988654..........468*************************865....6889***************965599999985246779********987527889************************************9988754 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   0.0   9.5e-10   1.8e-07     119     207 ..     206     290 ..     192     301 .. 0.83

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 9.5e-10
    TIGR00382 119 nilliGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvekaekGiiyideidki..arksenasitrdv 207
                   +ll Gp G+Gktlla++la +++  f    a+++ +  y+Ge    ++ +++       +  e  +i++deid i  +r se++s  r++
  MMETSP1061-20121228|16160_1 206 GVLLYGPPGTGKTLLARALASNINATFLKVVASAIVD-KYIGESAR-VIREMFGF----AKDHEPCVIFMDEIDAIggSRFSEGTSADREI 290
                  4899***********************9999988887.6****864.45555544....4567889**********77799*****99986 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   3.2e-09     6e-07     285     400 ..     176     288 ..     162     304 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 3.2e-09
    TIGR03922 285 keqvaalkssvevalvRaerGlavaqrs.kHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLgg...vlFlDEayaLvekrdgakddfGl 400
                   eq++ l++ +e+ l+  e    v  ++ k +ll GPPGtGkt +Ar++a  +         +   v  + ++ +yiges+    e+   a +    v+F+DE+ a+   r  ++     
  MMETSP1061-20121228|16160_1 176 NEQIRELREVIELPLTNPELFTRVGIKApKGVLLYGPPGTGKTLLARALASNIN-------ATFLKVVASAIVDKYIGESARVIREMFGFAKDHepcVIFMDEIDAIGGSRFSEGTSADR 288
                  56788888888888888887778876653678999**************98653.......45566788999****************999985555******99887665555554444 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.2       6.2   1.2e+03     155     172 ..      35      52 ..      20      70 .. 0.47
   2 !   19.4   0.0   4.9e-07   9.1e-05      46      90 ..     203     246 ..     198     261 .. 0.85
   3 !    6.5   0.0    0.0039      0.73     246     283 ..     262     298 ..     253     312 .. 0.81

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 6.2
    TIGR00390 155 alrkklreGelddkeiei 172
                  + ++  re  ldd+  +i
  MMETSP1061-20121228|16160_1  35 QREQTEREQVLDDYRAKI 52 
                  222222333333333333 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 4.9e-07
    TIGR00390  46 vPknilmiGstGvGkteiarrlaklaeaPfikveatkftevGyvG 90 
                   Pk +l+ G+ G Gkt +ar la  ++a f+kv a+   +  y+G
  MMETSP1061-20121228|16160_1 203 APKGVLLYGPPGTGKTLLARALASNINATFLKVVASAIVD-KYIG 246
                  59********************************997765.3666 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0039
    TIGR00390 246 eesGiifideidkiakkgessgadvsreGvqrdllPiv 283
                   e  +if+deid i  +  s g+   re +qr ll ++
  MMETSP1061-20121228|16160_1 262 HEPCVIFMDEIDAIGGSRFSEGTSADRE-IQRTLLELL 298
                  56789*********99986666666666.999999886 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   1.4e-08   2.7e-06      30      93 ..     204     275 ..     182     280 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.4e-08
    TIGR00635  30 ldhvllyGPPGlGkttlakiiakelgvk.lkitsgpalekp.gDlaailtal....eegd..vlfiDeihrl 93 
                     vllyGPPG Gkt la+ +a++++++ lk++++  ++k  g+ a ++ ++    ++++  v+f+Dei ++
  MMETSP1061-20121228|16160_1 204 PKGVLLYGPPGTGKTLLARALASNINATfLKVVASAIVDKYiGESARVIREMfgfaKDHEpcVIFMDEIDAI 275
                  5679*********************97648999999998852444445444322223332448999999776 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.3e-08   6.2e-06     356     448 ..     207     298 ..     197     417 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.3e-08
    TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrlslGGlkDvaeikGHRrtYvGalPGkiiqglk.kvktenP.lillDEiDKlg.......ssvrGdPasaLLEvL 448
                  + l+GPPG GKt la+++A+ +n +f+++    + D          Y+G    ++i  +   +k ++P +i++DEiD +g       +s   +   +LLE+L
  MMETSP1061-20121228|16160_1 207 VLLYGPPGTGKTLLARALASNINATFLKVVASAIVDK---------YIGES-ARVIREMFgFAKDHEPcVIFMDEIDAIGgsrfsegTSADREIQRTLLELL 298
                  679***************************9999995.........99985.677777751567777756789****9996555433333333345677776 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.4e-06   0.00045      38      66 ..     202     230 ..     171     242 .. 0.83
   2 ?    3.3   0.1     0.036       6.8     248     281 ..     385     419 ..     246     425 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.4e-06
    TIGR02928  38 srpsnvliyGktGtGKtavtkkvlkelee 66 
                  + p+ vl+yG++GtGKt+ ++++  ++++
  MMETSP1061-20121228|16160_1 202 KAPKGVLLYGPPGTGKTLLARALASNINA 230
                  5799******************9999876 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.036
    TIGR02928 248 LreageiAeeegsekvteehvekAqeki.ekerll 281
                    eag  A + +++ v ee+  kA +ki e ++l+
  MMETSP1061-20121228|16160_1 385 CTEAGLFAIRSDRDYVLEEDFMKAARKIlENKKLE 419
                  46899999999999999999999988885665554 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     4e-06   0.00074      37     116 ..     202     274 ..     168     316 .. 0.76
   2 ?   -1.8   0.0       1.5   2.9e+02     192     219 ..     395     422 ..     389     426 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4e-06
    TIGR02881  37 kaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevi...kkalGGvlfideays 116
                  ka k    +++ G PGtGkt +ar la+    +n      +++v  + +v +yiG++a+ +re+    k     v+f+de  +
  MMETSP1061-20121228|16160_1 202 KAPKG---VLLYGPPGTGKTLLARALASN---IN----ATFLKVVASAIVDKYIGESARVIREMFgfaKDHEPCVIFMDEIDA 274
                  44443...4678*************9974...44....4688899999***************97332555678999999755 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.5
    TIGR02881 192 eereyklteeakaklreklakvksasek 219
                   +r+y l e+  ++ r++l ++k +s+ 
  MMETSP1061-20121228|16160_1 395 SDRDYVLEEDFMKAARKILENKKLESKL 422
                  6899999999999999988888776665 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   1.1e-05     0.002     152     194 ..     181     223 ..     176     235 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1.1e-05
    TIGR02903 152 alseivGqeraikallaklaspfpqhiilyGppGvGkttaarl 194
                  +l e++    +   l++++    p+ ++lyGppG Gkt  ar 
  MMETSP1061-20121228|16160_1 181 ELREVIELPLTNPELFTRVGIKAPKGVLLYGPPGTGKTLLARA 223
                  56666666667777899999999*****************995 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00018     0.033     486     526 ..     204     243 ..     197     258 .. 0.83
   2 ?    2.5   0.1     0.038       7.1     257     359 ..     243     353 ..     239     374 .. 0.52

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00018
    TIGR02639 486 PvgsflfvGptGvGktelakqLaeelgvellrfDmseymek 526
                  P g+ l +Gp G Gkt la++La++++ ++l+   s   +k
  MMETSP1061-20121228|16160_1 204 PKGV-LLYGPPGTGKTLLARALASNINATFLKVVASAIVDK 243
                  5555.567********************9999877766655 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.038
    TIGR02639 257 kyrGdfeerlkevveeiekeedailfiDeihtivgagatsggsldasnlLkPala...s........GkirciGsttyeeykkifekdkaLsr..rf.qkidveePskeetvkilkg 359
                  ky G+  + ++e+    +++e  ++f+Dei +i g+  + g+s d  ++ +  l+   +        G+++++ +t   +       d aL r  r  +ki+++eP++ + ++ilk 
  MMETSP1061-20121228|16160_1 243 KYIGESARVIREMFGFAKDHEPCVIFMDEIDAIGGSRFSEGTSADR-EIQRTLLEllnQmdgfddtgGQVKMVMATNRPDI-----LDPALLRpgRLdRKIEIPEPNETQRLEILKI 353
                  5666666666666666667777788888888876665554444442.2222221100011111112245555555443332.....2333433222214788888888888888875 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.1e-05    0.0057      37     174 ..     203     357 ..     189     361 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.1e-05
    TIGR03420  37 aerllylwGesgsGksHLLqAacaaaeeagksai...ylp..lkelaqllvev..legleqaelvalDdvealag.........ereweealfdlynrlres....gr.kllvageaaPaelklrlpDLrtRlawglvfqlkplsdeeklaaLqeraae 174
                  a + + l+G++g+Gk+ L +A++++++++  +++    ++  + e a++  e+  ++++++  ++ +D+++a+ g         +re +++l++l+n++       g+ k+++a ++ P  l+ +   L         +++++ +++++l++L+ +aa+
  MMETSP1061-20121228|16160_1 203 APKGVLLYGPPGTGKTLLARALASNINATFLKVVasaIVDkyIGESARVIREMfgFAKDHEPCVIFMDEIDAIGGsrfsegtsaDREIQRTLLELLNQMDGFddtgGQvKMVMA-TNRPDILDPA---LLRPGRLDRKIEIPEPNETQRLEILKIHAAN 357
                  566789*****************99998766554111344112333333347733455566678999****9976222222222457788888888887532222244455555.4455555555...4333344456777777777777777777765 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.2e-05     0.006      13      41 ..     203     231 ..     197     240 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.2e-05
    TIGR00678  13 lahAlLfaGpeGvGkealaealakallCe 41 
                   ++ +L++Gp+G+Gk+ la+ala++++++
  MMETSP1061-20121228|16160_1 203 APKGVLLYGPPGTGKTLLARALASNINAT 231
                  67899*******************99875 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.7e-05    0.0069     213     233 ..     206     226 ..     197     246 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.7e-05
    TIGR00368 213 nllllGPPGsGktllakrlqg 233
                   +ll GPPG+Gktlla+ l +
  MMETSP1061-20121228|16160_1 206 GVLLYGPPGTGKTLLARALAS 226
                  689**************9876 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   5.1e-05    0.0095      37      62 ..     205     230 ..     199     237 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.1e-05
    TIGR02397  37 hayLfsGprGvGKTsiArilAkalNC 62 
                  +  L++Gp G+GKT +Ar lA  +N 
  MMETSP1061-20121228|16160_1 205 KGVLLYGPPGTGKTLLARALASNINA 230
                  6679*******************996 PP

>> TIGR00764  lon_rel: putative ATP-dependent protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00044     0.082      35      61 ..     202     228 ..     196     247 .. 0.84
   2 ?    0.7   0.0      0.17        31     359     389 ..     380     410 ..     368     425 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00044
    TIGR00764  35 kqkrnvlliGePGvGksmlakamaell 61 
                  k  + vll G PG+Gk++la+a+a  +
  MMETSP1061-20121228|16160_1 202 KAPKGVLLYGPPGTGKTLLARALASNI 228
                  56678******************9755 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.17
    TIGR00764 359 elggvvraagdiavkkgkkyvtredvlealk 389
                  ++ +v   ag  a++++++yv +ed ++a +
  MMETSP1061-20121228|16160_1 380 DMRNVCTEAGLFAIRSDRDYVLEEDFMKAAR 410
                  67899999******************99864 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   9.9e-05     0.018      85     106 ..     203     224 ..     153     239 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 9.9e-05
    TIGR02902  85 npqhviiyGppGvGktaaarlv 106
                   p+ v++yGppG Gkt  ar  
  MMETSP1061-20121228|16160_1 203 APKGVLLYGPPGTGKTLLARAL 224
                  5899************999954 PP

>> TIGR01526  nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00019     0.035     163     203 ..     205     245 ..     197     257 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00019
    TIGR01526 163 ktvailGgestGkstLvrklaeklnttsaeeyareyeeakl 203
                  k v + G+  tGk+ L+r+la+ +n+t+ +  a   + +  
  MMETSP1061-20121228|16160_1 205 KGVLLYGPPGTGKTLLARALASNINATFLKVVASAIVDKYI 245
                  667889**********************9887777666555 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   3.3     0.012       2.2      58     137 ..       8      87 ..       1     110 [. 0.32
   2 ?    6.5   0.0    0.0085       1.6     193     212 ..     199     218 ..     172     232 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.012
    TIGR03499  58 saaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae...................eelrkelkalkellekqlselaleeed 137
                  +++++++e+++a  +a+p+++++++++++                 +++e+++                   +++r+++k l +  +k+ + l+    +
  MMETSP1061-20121228|16160_1   8 NNDEAAAENNPAPAAAAPEPSAEETQRQR-----------------EQTEREQvlddyrakirehreietrlKRMREDVKGLGKRYQKTEDDLS--ALQ 87 
                  22222222222222222222222221111.................111111133333333334411222334444444444444444444443..233 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0085
    TIGR03499 193 eilekggviaLvGptGvGKT 212
                     + ++ ++L Gp+G GKT
  MMETSP1061-20121228|16160_1 199 VGIKAPKGVLLYGPPGTGKT 218
                  445677889**********9 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   2.4      0.17        32     341     414 ..       8      78 ..       1     109 [. 0.43
   2 ?    6.9   0.0    0.0021       0.4      27      47 ..     206     226 ..     201     241 .. 0.89
   3 ?   -2.3   0.0       1.2   2.3e+02     287     310 ..     394     417 ..     379     423 .. 0.77

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.17
    TIGR02442 341 deseekekeeskkqe...eeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavska...rargasGrrskt 414
                  +++ e+ +    +++   +    +++++e++ ++e++e+++    v  + ++ki + +++++  +   +  ++ G+r + 
  MMETSP1061-20121228|16160_1   8 NND-EAAA----ENNpapAAAAPEPSAEETQRQREQTEREQ----VLDDYRAKIREHREIETRLKrmrEDVKGLGKRYQK 78 
                  111.1111....11111122222223333333333333332....22233333333333333222111345666776554 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0021
    TIGR02442  27 gvlirGekGtaKstaaRaLaa 47 
                  gvl+ G  Gt+K+ +aRaLa+
  MMETSP1061-20121228|16160_1 206 GVLLYGPPGTGKTLLARALAS 226
                  9******************86 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 1.2
    TIGR02442 287 ldgrrevteedvreaaeLvlkhRr 310
                   + r++v eed+++aa+ +l+ ++
  MMETSP1061-20121228|16160_1 394 RSDRDYVLEEDFMKAARKILENKK 417
                  457999**********98888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       370  (0.0901999); expected 82.0 (0.02)
Passed bias filter:                      296  (0.0721599); expected 82.0 (0.02)
Passed Vit filter:                        78  (0.0190151); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.48u 0.17s 00:00:00.65 Elapsed: 00:00:00.50
# Mc/sec: 1127.19
//
Query:       MMETSP1061-20121228|16175_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 739.14
//
Query:       MMETSP1061-20121228|16182_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1113.99
//
Query:       MMETSP1061-20121228|16194_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1247.90
//
Query:       MMETSP1061-20121228|16190_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-29  101.0   0.0    1.8e-29  100.6   0.0    1.1  1  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase


Domain annotation for each model (and alignments):
>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.0   4.5e-33   1.8e-29      10     173 ..      43     212 ..      36     258 .. 0.82

  Alignments for each domain:
  == domain 1    score: 100.6 bits;  conditional E-value: 4.5e-33
    TIGR03413  10 Nyiwllkdeks.eavvvDpgeaepv..lealeekglkleaillTHhHaDHvggvaellekfp..vkvvgpaeeripgltkevkegdevellelevevlevpGHtlgHiayyleeekvlFcgDtLfsaGCGrl.fe.gtaeqmleslq.klaaLpeetkvycaHEYtlsNlrF 173
                   y +ll d+++ +a++vDp + +    le +++ gl++   l+TH HaDH+ g+  l+++++   +v+++a+   ++ + ++ +gd++ ++++ vev ++pGHt+g ++y++++ +++ +gD+L+  GCGr  f+ g+a+++++s++ +l +L ++t vy+aH+Y  +  + 
  MMETSP1061-20121228|16190_1  43 TYTYLLWDKSTkDAILVDPVDVQVDrdLEEINSLGLNVVYALNTHAHADHITGTGILKQRIDqlQSVISAAS--GAKSDIQILHGDKIVFGGRYVEVRSTPGHTEGCVSYVADDGSFVLTGDALLVSGCGRTdFQgGSADTLYDSVHgQLFTLGDATVVYPAHDYKSRTHTT 212
                  6999999999889******99876512667888888888999*******************98666776665..4556899**************************************************7666268999****9759****************8765554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1577.87
//
Query:       MMETSP1061-20121228|16210_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.17
# Mc/sec: 753.11
//
Query:       MMETSP1061-20121228|16224_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    5.5  11.0        1.6    5.0   7.6    1.2  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   7.6   0.00038       1.6      16     114 ..       5     104 ..       1     120 [. 0.77

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.00038
    TIGR03319  16 yllakkiaekkleeaeeeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlk.qkeekldrkkeklekk.eeelekkekele 114
                  +  ++++++++ ++a++ea++ ++  ++   ++++++l   +e+ + +++++ ++l+  r +l+++e rl+ +++e+l +++ +l+++  ++   + ++l+
  MMETSP1061-20121228|16224_1   5 WEAQQRAMKEQERKAKQEATQALHGYRRSGLSEEETKLAALREQDRIQKQNAAEQLRGYRGQLSEKEARLAaERQEELRKRQ-ALDEQlRTNGVVSAQDLA 104
                  5567788888999999999999999999999999999999999999999999999999999999999999626788888887.454430344444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1593.30
//
Query:       MMETSP1061-20121228|16217_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2564.36
//
Query:       MMETSP1061-20121228|16258_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 2026.03
//
Query:       MMETSP1061-20121228|16261_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1127.91
//
Query:       MMETSP1061-20121228|16281_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 423.75
//
Query:       MMETSP1061-20121228|16328_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 2009.17
//
Query:       MMETSP1061-20121228|16343_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1515.60
//
Query:       MMETSP1061-20121228|16337_1  [L=745]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-06   26.2   0.0    0.00076   16.8   0.0    2.2  2  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein


Domain annotation for each model (and alignments):
>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.8e-07   0.00076      12     110 ..     522     627 ..     513     635 .. 0.77
   2 !    7.0   0.0   0.00017       0.7      15      99 ..     658     736 ..     646     743 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.8e-07
    TIGR03896  12 eiaaettLieeGkaaddLfilldGaitvtikqe..eddaltrav......elaeLsrGelvGemslleerppvatikaveksrllsipveeLaaklqsdvalaaslY 110
                   ++++  +i++G+a d ++i+ +Ga+ v+i  e  edd +   v        a+       Ge +l+   p  a+i+a+ +  l  + ++++  +l++ ++  + l 
  MMETSP1061-20121228|16337_1 522 RVKKGDWVIKQGSAGDRFYIIDEGAFDVRILGEgeEDDGSGG-VlthvyeGSASKHLHPCFGELALMYSAPRSASIIATSDGTLWALHRSAFRQVLAQSQGTRKELM 627
                  67888899*********************9654114444433.335555534555556789**********************999*99999999999887666655 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00017
    TIGR03896  15 aettLieeGkaaddLfilldGait.vtikqeeddaltravelaeLsrGelvGemslleerppvatikaveksrllsipveeLaakl 99 
                   +  ++e+G+  + +f++ +G+   v++++ + +++        L+ G+  G   +++ +   at+ + +     +i++e+L+ ++
  MMETSP1061-20121228|16337_1 658 RGENIVEQGHIGETMFVITSGTCErVRVTKGDPKSV-------TLKAGQHFGQEVIVDRQKYTATVVSLQTITGWKIKREDLVKIV 736
                  567899***************985255555444444.......79************999999***9999999999*999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (745 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 3511.85
//
Query:       MMETSP1061-20121228|16364_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1556.37
//
Query:       MMETSP1061-20121228|16380_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|16389_1  [L=679]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.5e-282  935.6   0.0   2.9e-282  935.4   0.0    1.0  1  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
   8.6e-156  518.0   0.0     1e-155  517.7   0.0    1.0  1  TIGR02316 propion_prpE: propionate--CoA ligase
    1.2e-78  262.7   0.0    1.5e-78  262.4   0.0    1.0  1  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
    1.1e-42  144.3   0.0    1.6e-42  143.7   0.0    1.2  1  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    1.9e-41  140.3   0.0    1.2e-40  137.6   0.0    1.9  1  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    1.1e-39  134.3   0.3    4.7e-38  128.9   0.2    2.7  1  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    1.2e-37  127.4   0.0    8.3e-23   78.4   0.0    2.4  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    3.6e-30  102.5   0.0    2.1e-19   67.0   0.0    2.4  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    3.2e-28   96.2   0.1    5.2e-28   95.6   0.0    1.3  1  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    1.8e-26   90.8   0.0    7.6e-26   88.7   0.0    1.9  1  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    8.8e-21   71.8   0.0    8.4e-12   42.2   0.0    3.1  3  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    4.1e-12   42.1   0.0    1.4e-09   33.7   0.0    2.4  3  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    5.3e-12   42.9   0.0    2.3e-09   34.2   0.0    2.4  2  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  935.4   0.0  9.1e-285  2.9e-282       3     628 ..      41     676 ..      39     677 .. 0.96

  Alignments for each domain:
  == domain 1    score: 935.4 bits;  conditional E-value: 9.1e-285
    TIGR02188   3 eleeykelyeeaiedpekfwaklakeelewlkpfekvldeslep.kvkWfedgelnvsyncvdrhvek.rkdkvaiiwegdeegedsrkltYaellrevcrlanvlkelGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaee..svekvlvvkrtg....eevaewkegrDvwweelvekeasaecepekldsedplfiLYtsGstGkPkGvlhttgGylllaaltvkyvfdikdedifwCtaDvGWvtGhsYivygPLanGattllfegvptypdasrfweviekykvtifYtaPtaiRalmklgeelvkkhdlsslrvlgsvGepinpeaweWyyevvGkekcpivdtwWqtetGgilitplpgvatelkpgsatlPlfGieaevvd.eegkeveeeeeg....gvLvikkpwPsmlrtiygdeerfvetYfkklkglyftGDgarrdkdGyiwilGRvDdvinvsGhrlgtaeiesalvsheavaeaavvgvpdeikgeaivafvvlkegveedeeelekelkklvrkeigpiakpdkilvveelPktRsGkimRRllrkiaege.ellgdvstledpsvveelke 628
                  + e+yk+l++++ie+p+ fw+k ake+++w++pf+kvld  +e+ +v+Wfe+g+ln+syn++drhv++ +++ va+iwegde++ d+rk+tY ++lr+vc++an++ ++Gv+kgd v+iY+pmipe++++mlacaRiGavhsvvfaGfsaeal +Ri  a++k +itad g Rggk+i+lk+iv++al+k ++   ve+v+v +r      ++     ++rDv +++lv+  ++ +c+p+++d+ed lfiLYtsGstG+PkG++httgGy l+a++t++++fd+ ++dif+C+aD+GW+tGh+Y+vygPL+nG t+++fe++p ypd++r+w++++++k+t+fYtaPtaiR+lm+ g+e vkk+dlssl+vlgsvGepinpeaw+WyyevvGk++c++vdt+WqtetGg++it+lpg +t++kpgs+tlP++G++++v+  ++gke++e +++    gv+++k+pwP+m+rt  gd+erf ++Y+k ++g+yftGD++ rd+dGy +i+GR+Ddv+nvsGhr+gtae+esalv h ava aavvg+p++ikg++i+afv+l++g+ee+ e l kel+++vr+eig + +pd i v ++lP tRsGkimRR+lrki+ ge ++lgd+stl+dps+ve l+e
  MMETSP1061-20121228|16389_1  41 SFEQYKTLHQQSIENPTDFWGKAAKEHIDWFRPFDKVLDGGFEHgDVRWFEGGQLNLSYNALDRHVNSkNANDVALIWEGDEPS-DVRKITYDQVLRKVCQIANAMVRMGVQKGDIVTIYMPMIPELAMTMLACARIGAVHSVVFAGFSAEALGQRISAAKSKHLITADIGRRGGKTIALKDIVNDALTKLDCdsIVEHVMVWERFYggaeSPAPYEMKERDVRMDSLVAV-QRPYCPPTHMDAEDNLFILYTSGSTGNPKGLVHTTGGYTLYAKMTTQITFDLAPGDIFACVADCGWITGHTYVVYGPLLNGSTSFMFESTPVYPDEGRYWDMVQRHKITQFYTAPTAIRLLMRSGDEPVKKYDLSSLKVLGSVGEPINPEAWRWYYEVVGKSNCTVVDTYWQTETGGHIITNLPG-ITPMKPGSCTLPFYGVDTAVLCpTTGKELTEPDGNgnfhGVMALKQPWPGMARTCLGDHERFLTVYYKPYPGYYFTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVVGKPHDIKGQSICAFVMLTAGYEESPE-LMKELRMAVRSEIGGFCSPDMIVVSPSLPMTRSGKIMRRILRKIVCGEtDSLGDTSTLADPSIVELLIE 676
                  579****************************************99*********************9989*************9.5*******************************************************************************************************9877669********9741221343445689**********5.*****************************************************************************************************************************************************************************************.5****************99998799**9995444434669**************************************************************************************************************95.************************************************99***************9886 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  517.7   0.0  3.3e-158    1e-155       2     620 ..      44     672 ..      43     678 .. 0.91

  Alignments for each domain:
  == domain 1    score: 517.7 bits;  conditional E-value: 3.3e-158
    TIGR02316   2 ayeelyqrsieepeafwaeqar.ridwqtpfarvldds.nlpfarwfvggrtnlcynavdrhlekr.geqlalvavssetgeertltyrqlhrevnalasalralgvrrgdrvliylpmiaeaalallacarigaihsvvfggfashslaariddatpklivsadagarggkvieykklldaaiae..aqhkpahvllvdrglak.....lrrvpgrdvdyaalrrqhedadvevewlesnepsyilytsgttgkpkgvqrdvggyavalaasmdaifgakagdvlfsasdvgwvvghsyivyapllaglatvlyeglptrpdggvwwsivekyrvsvmfsaptairvlkkqdaallrkhdlsslevlflagepldeptarwisdalgk...pvidnywqtetgwpvlaiarglddkpvklgspglpvygyrldvldeatgedvgp.....nekgllvvaaplppgclstvwgddarflktyfsafkrllyssldwgirdedgytfilgrtddvinvaghrlgtreieesvsshaavaevavvgvkdelkgqvavafailkeadsvedaddahalekelmalvesqlgavarparvyvvaalpktrsgkllrraiqava..egrdpgdlttiddpaale 620
                  +y+ l+q+sie+p  fw++ a+ +idw  pf +vld   +    rwf gg+ nl yna+drh++ + ++++al+    e  + r++ty q+ r+v ++a a+  +gv++gd v iy+pmi+e a+++lacariga+hsvvf gf++++l  ri  a+ k +++ad g rggk i  k+++++a+++  + +  +hv++ +r           ++  rdv + +l         +   ++++++ +ilytsg+tg pkg+   +ggy++   ++ ++ f+   gd++ + +d gw+ gh+y+vy+pll g ++ ++e +p+ pd g +w +v++++++++++aptair+l +     ++k+dlssl+vl   gep++  + rw  + +gk   +v+d ywqtetg  +++  +g+   p+k gs  lp+yg +  vl  +tg++ +      n +g+++++ p  pg  +t  gd  rfl+ y+  ++   y + d   rd dgy+fi+gr ddv+nv+ghr+gt e+e ++  haava++avvg   ++kgq   af++l      +  +++  l kel  +v s++g ++ p  + v  +lp trsgk++rr ++ ++  e+   gd +t+ dp+ +e
  MMETSP1061-20121228|16389_1  44 QYKTLHQQSIENPTDFWGKAAKeHIDWFRPFDKVLDGGfEHGDVRWFEGGQLNLSYNALDRHVNSKnANDVALIWEGDEPSDVRKITYDQVLRKVCQIANAMVRMGVQKGDIVTIYMPMIPELAMTMLACARIGAVHSVVFAGFSAEALGQRISAAKSKHLITADIGRRGGKTIALKDIVNDALTKldCDSIVEHVMVWERFYGGaespaPYEMKERDVRMDSLVAVQ-RPYCPPTHMDAEDNLFILYTSGSTGNPKGLVHTTGGYTLYAKMTTQITFDLAPGDIFACVADCGWITGHTYVVYGPLLNGSTSFMFESTPVYPDEGRYWDMVQRHKITQFYTAPTAIRLLMRSGDEPVKKYDLSSLKVLGSVGEPINPEAWRWYYEVVGKsncTVVDTYWQTETGGHIITNLPGIT--PMKPGSCTLPFYGVDTAVLCPTTGKELTEpdgngNFHGVMALKQPW-PGMARTCLGDHERFLTVYYKPYPG-YYFTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVVGKPHDIKGQSICAFVMLT-----AGYEESPELMKELRMAVRSEIGGFCSPDMIVVSPSLPMTRSGKIMRRILRKIVcgETDSLGDTSTLADPSIVE 672
                  79*****************99846************87356789*******************8652789*****************************************************************************************************************99722456679******96543101123356679****9998754.56788999*******************************999999******************************************************************************************************9999***9999975557********************96..7899***************9999998753222226689******97.6999*****************996.57788*****************************************************************99.....344455567899*************************************87642345567*********9776 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  262.4   0.0   4.8e-81   1.5e-78      16     643 ..      24     673 ..      11     677 .. 0.86

  Alignments for each domain:
  == domain 1    score: 262.4 bits;  conditional E-value: 4.8e-81
    TIGR01217  16 darlarfraavgerfGaalgdydalyrwsvdeldafwkav.wefsdvvfssaekevvddskmlaar.ffpgarlnyaenll.rkkgs....edallyvdee.kesakvtfeelrrqvaslaaalralGvkkGdrvagylpnipeavaallatasvGaiwsscspdfGargvldrfsqiepkllfsvdgyvynGkehdrrekvrevakelpd..lravvli..pyvgdreklap..kvegaltledllaaaqaaelvfeqlpfdhplyilfssGttGvpkaivhsaGGtlvqhlkehvlhcdltdgdrllyyttvGwmm.wnflvsg.latGatlvlydGsplvpatnvlfdlaeregitvlGtsakyvsavrkkglkparthdlsalrlvastGsplkpegfeyvyeei.kadvllasi....sGGtdivscfvganpslpvykGeiqapglGlaveawd.eeGkpvtgekGe......lvvtkplpsmpvrfwndedGskyrkayfdkypgvwahGdyieltprGgivihGrsdatlnpnGvrlGsaeiynaverldeveeslvigqeqedgeervvlfvklasGatldealvkeikdairaglsprhvpskiievagiprtlsGkkvevavkdvvaGkpve..nkgalsnpealdl 643
                   + ++   ++   +   ++ +y+ l++ s+++  +fw +   e+  +   ++ ++v+d+    +++ +f g +ln + n+l r+ +s    + al++ ++e  ++ k+t++++ r+v+++a+a+ ++Gv+kGd v+ y+p ipe  + +la+a +Ga+ s +   f a+++  r s  + k l++ d  + +Gk    ++ v++   +l    + + v++   + g +e+ ap    e  + ++ l+a  q +     ++  +  l+il++sG+tG pk +vh++GG  +      ++  dl++gd++   + +Gw+    ++v g l+ G+t  +++ +p+ p+    +d+++r +it + t+   +  + ++g +p++++dls+l+++ s G p++pe++++ ye + k++  +         G  i++ + g +p++p   G    p  G++  +     Gk +t+  G+      +   +p p m  +   d +  ++   y++ ypg +  Gd +   + G   i Gr d  +n +G r+G+ae+  a+     v+++ v+g+ ++  ++ +  fv l++G + +++l+ke++ a+r+++     p+ i+  + +p t sGk++   ++++v G++    +  +l++p  ++l
  MMETSP1061-20121228|16389_1  24 GSLVDSVTDVFPAKADISFEQYKTLHQQSIENPTDFWGKAaKEH--IDWFRPFDKVLDGGFEHGDVrWFEGGQLNLSYNALdRHVNSknanDVALIWEGDEpSDVRKITYDQVLRKVCQIANAMVRMGVQKGDIVTIYMPMIPELAMTMLACARIGAVHSVVFAGFSAEALGQRISAAKSKHLITADIGRRGGKTIALKDIVNDALTKLDCdsIVEHVMVweRFYGGAESPAPyeMKERDVRMDSLVAV-QRPYCPPTHMDAEDNLFILYTSGSTGNPKGLVHTTGGYTLYAKMTTQITFDLAPGDIFACVADCGWITgHTYVVYGpLLNGSTSFMFESTPVYPDEGRYWDMVQRHKITQFYTAPTAIRLLMRSGDEPVKKYDLSSLKVLGSVGEPINPEAWRWYYEVVgKSNCTVVDTywqtETGGHIITNLPGITPMKP---GSCTLPFYGVDTAVLCpTTGKELTEPDGNgnfhgvMALKQPWPGMARTCLGDHE--RFLTVYYKPYPGYYFTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVVGKPHDIKGQSICAFVMLTAGYEESPELMKELRMAVRSEIGGFCSPDMIVVSPSLPMTRSGKIMRRILRKIVCGETDSlgDTSTLADPSIVEL 673
                  556677777777888899*******************7650555..55679*******998887766**********99994444445665778889887778999************************************************************************************************99888886411333334422466778888887445678999999987.999999999****************************9999999999*******************9835688876599******************************************************************************9944555554440011344456666655555554...777778788777775414688887654432222227788999999999998875..9*********************************************************************999******************************************************************8744337777877777666 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.7   0.0     5e-45   1.6e-42       9     507 ..     101     650 ..      93     651 .. 0.77

  Alignments for each domain:
  == domain 1    score: 143.7 bits;  conditional E-value: 5e-45
    TIGR02262   9 lldrnvvegrgdklafi......ddvsslsygeleaevrrvaaalrrlGvkreervllvlldtvdfpivflGairaGivpv.........alntlltaddyaylledsrarvvlvseellpvlkevlaklpd...leklvvvgak......p......agekqlaellateseqekaaatkaddpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlglreddvvfsaaklffayGlGnalifplsvGatavlmaerpt...pdavfdrlrrvkptifygvptlyaamla..dpelkaedekrlrlctsaGealpeevGkrwkarfGv...dildGvGstellhiflsnlpd..dvkyGtsGkpvpGyrlrlvd.dggedvadgevGellvsg........pssaagywnnreksratfeGe...wtrsGdkyvrnddGsytyaGrtddllkvsGiyvspfevesaliaheavleaavvgaededglikpkafvvlrsgadidealeeelkehvkdklapykyprwievvddlpktatGkiqrfklre 507
                   ldr v     + +a i       dv++++y+++ ++v ++a+a+ r+Gv++ + v + +    +  +++l   r G v           al  +++a + ++l++    r    + +l  +++++l+kl+    +e+++v  +       p      + ++ +  l+a + +   ++   a+d+ f ly+sGstG pkG vh+    +  a++ ++ +++l  +d+    a   +  G    +  pl  G+t+ ++   p      + +d+++r+k t fy++pt    ++   d+ +k+ d ++l++  s Ge++  e  + + +  G     ++d    te +   ++nlp+   +k G++  p  G    ++   +g++ ++   G+   +g        p  a +  +++e+  + +  +   +  +Gd   r++dG++   Gr dd++ vsG  +   evesal+ h+av +aavvg+  + +     afv+l  g++ +  l +el+  v+++++ +  p +i v  +lp t +Gki r  lr+
  MMETSP1061-20121228|16389_1 101 ALDRHVNSKNANDVALIwegdepSDVRKITYDQVLRKVCQIANAMVRMGVQKGDIVTIYMPMIPELAMTMLACARIGAVHSvvfagfsaeALGQRISAAKSKHLITADIGRRGGKTIALKDIVNDALTKLDCdsiVEHVMVWERFyggaesPapyemkERDVRMDSLVAVQRPYCPPTHMDAEDNLFILYTSGSTGNPKGLVHTTGGYTLYAKMTTQITFDLAPGDIFACVADCGWITGHTYVVYGPLLNGSTSFMFESTPVypdEGRYWDMVQRHKITQFYTAPTAIRLLMRsgDEPVKKYDLSSLKVLGSVGEPINPEAWRWYYEVVGKsncTVVDTYWQTETGGHIITNLPGitPMKPGSCTLPFYGVDTAVLCpTTGKELTE-PDGNGNFHGvmalkqpwPGMARTCLGDHERFLTVYYKPypgYYFTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVVGKPHDIKGQSICAFVMLTAGYEESPELMKELRMAVRSEIGGFCSPDMIVVSPSLPMTRSGKIMRRILRK 650
                  5555555555555555433322247899****************************99998777777777665555555440000111115666666666666666666666666779**********997422235555543223222342223332445678999****************************************************************************************99887653115689******************998876225556667789************99999999888886222699********99899****8335799*******999887665366666654.333333444000111114455566666666666665541115679***************************************************98877778889************99**************************************99996 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.6   0.0   3.8e-43   1.2e-40      34     537 ..     109     649 ..      98     650 .. 0.80

  Alignments for each domain:
  == domain 1    score: 137.6 bits;  conditional E-value: 3.8e-43
    TIGR03208  34 rapdkpalvalrvesgavrrlsyreldalvdriavglarlgvgrgdvvslqlpnrwefvalylacarigavlnplmpifrerelsfmlkfadskvlvvpksfrgfdhaamare.lqsklpal......rqvvvvdg..dgdddfdallvtaerdddpdaaailrgdrlsp.....ddvtqliytsgttgepkgvmhta..ntllsnilayaerlelgegdvilmaspmahqtgfmyglmlplvlrasavlqdiw....naakaaeliretgvtftmastafltdlaravkesge..pvsslktflcagapipgalverarealgak...ivsawgmtengavtvtkpddaeekasvtdglplpgvevkvid.adgaklsage.....vgrllvr......aasnfggylkrphlnavdaegwfdtgdlafldaegyiriagrskdviirggenipvveieallykhpavaqvaivaypderlgeracavvvlktgasldfaalveflk..aqkvalqyiperlvvrdalpatpagkiqkfrlr 537
                  +  +++al+   +e ++vr+++y ++  +v +ia  + r+gv++gd+v++ +p   e+++ +lacarigav   ++  f  + l   ++ a+sk l+  +  r+  +   +++ +++ l +l       +v+v +   +g+++     +  erd   d+   ++++   p     +d   ++ytsg+tg+pkg++ht+   tl + +++ +  ++l  gd+    +     tg++y +  pl+ ++++ + +      +  +  ++++ +++t   ++ + +  l r+ +e  +   +sslk +   g pi +   +   e++g +   +v ++  te+g   +t++         +  lp+ gv+  v+  + g++l++ +      g + ++      a + +g + +   +      g++ tgd    d++gy  i gr  dv+   g  i   e+e+ l  h avaq a+v+ p +  g+ +ca+v+l  g   +   + e     + ++     p+ +vv  +lp t +gki +  lr
  MMETSP1061-20121228|16389_1 109 KNANDVALIWEGDEPSDVRKITYDQVLRKVCQIANAMVRMGVQKGDIVTIYMPMIPELAMTMLACARIGAVHSVVFAGFSAEALGQRISAAKSKHLITADIGRRGGKTIALKDiVNDALTKLdcdsivEHVMVWERfyGGAESPAPYEM-KERDVRMDSLVAVQRPYCPPthmdaEDNLFILYTSGSTGNPKGLVHTTggYTLYAKMTTQIT-FDLAPGDIFACVADCGWITGHTYVVYGPLLNGSTSFMFESTpvypDEGRYWDMVQRHKITQFYTAPTAIRLLMRSGDEPVKkyDLSSLKVLGSVGEPINPEAWRWYYEVVGKSnctVVDTYWQTETGGHIITNLPGITPMKPGSCTLPFYGVDTAVLCpTTGKELTEPDgngnfHGVMALKqpwpgmARTCLGDHERFLTVYYKPYPGYYFTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVVGKPHDIKGQSICAFVMLTAGYEESPELMKELRMavRSEIGGFCSPDMIVVSPSLPMTRSGKIMRRILR 649
                  456779999999999***********************************************************************************999877666555554155666665222222566666644367777666666.99******999999987766333225667899**************9733699999999885.8*********************************99988532223667999********988888888999999999976522689*******************9**999753337888999***99999999998888888999*******999852677877653311111233333311111111122222222334445678***************************************************************************986655555543311567888899******************987776 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.2   1.5e-40   4.7e-38       1     409 []     130     580 ..     130     580 .. 0.83

  Alignments for each domain:
  == domain 1    score: 128.9 bits;  conditional E-value: 1.5e-40
    TIGR01733   1 tYreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeelaeelaevaleailleeleekaaedasaeeaaeak....................................skpddlayviyTSGStGkPKgVlvehrslvnllaslar.ryelseedrvlqfsslaFDl.sveeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeea....see.lkslrlvllgGealtaelverlrarae..evrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldea..lrpvpvgvvGEL..yigGagvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKirGfRielgEieaalaelpgveeavv 409
                  tY +  +++ ++A+a+ ++g v++gd+V ++++  +el +++la+ + Ga++ ++ +   ae l + +++ak k+l+t +  +   ++ al++i  + l++ + ++   e     +                                     +++d  +++yTSGStG+PKg + +  + + +++ +++  ++l+++d +++++   + +  ++ ++++ll+G t ++ +++   +++  + ++++++k+t + + p+ ++ll+ +     ++  l+sl+++  +Ge +++e+ + + + ++  +++++ +Y  TEt  ++ ++ ++       +p +   p+ +v++ vl +   +++  +   G    +++ ++   G         erF++  +++ +g   Y TGD v++++dG   ++GR+Dd + ++G+Ri  +E+e+al  + +v++a+v
  MMETSP1061-20121228|16389_1 130 TYDQVLRKVCQIANAMVRMG-VQKGDIVTIYMPMIPELAMTMLACARIGAVHSVVFAGFSAEALGQRISAAKSKHLITADIGRRGGKTIALKDIVNDALTKLDCDSI-VEHVMVWErfyggaespapyemkerdvrmdslvavqrpycppthMDAEDNLFILYTSGSTGNPKGLVHTTGGYTLYAKMTTQiTFDLAPGDIFACVADCGWITgHTYVVYGPLLNGSTSFMFESTPVYPDEGRYWDMVQRHKITQFYTAPTAIRLLMRSGdepvKKYdLSSLKVLGSVGEPINPEAWRWYYEVVGksNCTVVDTYWQTETGGHIITN-LPGITP-M-KPGSCTLPFYGVDTAVLCPTtgKELTEPDGNGNFhgVMALKQPWPGMARTCLGDHERFLTVYYKPYPG--YYFTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAV 580
                  9****************865.*********************************************************98877777777764444443333332222.22222222355555565666666667778888888888888777667777****************************999999999************996516777899*****99999999999966666666677777***************9997665444455****************999999998899************9988654.444433.3.4778999**********9997777777777887733466667778888889999*******9999876..***************************************************98 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   1.5e-15   4.9e-13      24     185 ..     127     305 ..     100     327 .. 0.74
   2 !   78.4   0.0   2.6e-25   8.3e-23     399     515 ..     530     649 ..     523     651 .. 0.92

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.5e-15
    TIGR03098  24 rtltyaaLseevkalasglkalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtsk......erldal...ed..alakchdlrtlilvdepekasekka.....gaevlsweklkaleeaa.akvdvidddlaailYtsGstGrPkgvvlsh 185
                  r++ty+++ ++v+++a+++  +g+++g+ v+iy++   e  ++++a++++g+v+  +     ae +   +  ++ k l+t+       + +++    +d  ++ +c ++++ ++v e     ++++     +   +++++l a +    +++++  +d   ilYtsGstG+Pkg+v + 
  MMETSP1061-20121228|16389_1 127 RKITYDQVLRKVCQIANAMVRMGVQKGDIVTIYMPMIPELAMTMLACARIGAVHSVVFAGFSAEALGQRISAAKSKHLITADigrrggKTIALKdivNDalTKLDCDSIVEHVMVWERFYGGAESPapyemKERDVRMDSLVAVQRPYcPPTHMDAEDNLFILYTSGSTGNPKGLVHTT 305
                  49*****************************************************************************9863322222233320013311233577776666655443332222223434566678888888887776777777889999*************99765 PP

  == domain 2    score: 78.4 bits;  conditional E-value: 2.6e-25
    TIGR03098 399 fsGDlvrrDeeGflyfvgRrdemiktsGyRvsPteveevllatglvaeavvlgvpdpelGqaivlvvvesdkeeld...kkellkelraelPaymvPakielrealprnanGkiDrkala 515
                  f GD+v+rD++G+ +++gR d+++  sG+R+   eve++l++   va+a+v+g p++  Gq+i + v+ + + e++    kel+ ++r e+  +  P +i ++ +lp + +Gki r++l+
  MMETSP1061-20121228|16389_1 530 FTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVVGKPHDIKGQSICAFVMLTAGYEESpelMKELRMAVRSEIGGFCSPDMIVVSPSLPMTRSGKIMRRILR 649
                  89***************************************************************9996665555411168999********************************9997 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.6e-11   5.1e-09      45     307 ..     125     414 ..      99     436 .. 0.70
   2 !   67.0   0.0   6.8e-22   2.1e-19     407     526 .]     527     649 ..     516     649 .. 0.93

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.6e-11
    TIGR02275  45 gerkfsyrelderadnlaasltklGikkgdtavvqlpniaefyivffallklGvaP..vlalfshrkselkayaeqiea..alliidrahslfdedalarelkakl...stlkvviva....g.k.e....veeelksaleslaee....vkleetkadevaffqlsGGstGtpkliPrthddyaysvrrsveic.eltqqtrylcalP....aahnyplssPGalGvfyaGGcvvlaad....pspteafpliekhkvtvtalvPpavalwldaae..ksradlsslkllqvGG 307
                  + rk++y ++ +++ ++a  + ++G++kgd + + +p i e+ ++++a  ++G++   v+a fs + +  +  a +++   ++ i  r  +++  ++++++  +kl   s ++ v+v     g + +      +e++  ++sl +        ++ +a++  f+  + GstG pk +  t   y+   + + +i   l     + c+      + h y +  P     ++ G +  + ++    p+  + ++++++hk+t     P+a+ l + +     +++dlsslk+l   G
  MMETSP1061-20121228|16389_1 125 DVRKITYDQVLRKVCQIANAMVRMGVQKGDIVTIYMPMIPELAMTMLACARIGAVHsvVFAGFSAEALGQRISAAKSKHliTADIGRRGGKTIALKDIVNDALTKLdcdSIVEHVMVWerfyGgAeSpapyEMKERDVRMDSLVAVqrpyCPPTHMDAEDNLFILYTSGSTGNPKGLVHTTGGYTLYAKMTTQITfDLAPGDIFACVADcgwiTGHTYVVYGP-----LLNGSTSFMFEStpvyPDEGRYWDMVQRHKITQFYTAPTAIRLLMRSGDepVKKYDLSSLKVLGSVG 414
                  5699*************************************************9752367777777665554444443311444666777889999999987766422245666776512222121111111233344444433221112334467899999**********************999999999863799999999886522225677776665.....55555544433211125566789**********************987733689********97655 PP

  == domain 2    score: 67.0 bits;  conditional E-value: 6.8e-22
    TIGR02275 407 GfyitGdlvkltkeGyivveGrakdqinrGGekiaaeeienlllkhpavidaalvsledellGekscafivvkdedlkavqlrrflrea...GlaeyklPdrvelidslPltavGkidkkalr 526
                  G+y+tGd v+++++Gy  + Gr  d +n  G +i + e+e+ l+ h av +aa+v  + ++ G+  caf+++     ++ +l + lr a    +  +  Pd + +  slP+t  Gki ++ lr
  MMETSP1061-20121228|16389_1 527 GYYFTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVVGKPHDIKGQSICAFVMLTAGYEESPELMKELRMAvrsEIGGFCSPDMIVVSPSLPMTRSGKIMRRILR 649
                  9***********************************************************************999889999988888542227899**********************99998 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6   0.0   1.7e-30   5.2e-28      45     541 .]     127     649 ..     117     649 .. 0.78

  Alignments for each domain:
  == domain 1    score: 95.6 bits;  conditional E-value: 1.7e-30
    TIGR03205  45 raitytelealaetaaaallragygkdasvalylgntpdhpinffgalkagarvvhlspldgeralshklsdsgarllitsdla..allpmalkflekglldrl....ivcedeswgk...vgtpkaaipadprivtyadfvkgaakpaewpavkaddvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfdv...aavlrd.ieekratvfpgvptmwial..andpslekrdlsslatigsggaplpvevaklfer...kvglklksgwgmtetcsp.gtghplegpdkpgsiglmlpgieldvvslddpkkvlppgevge....lrirg..pnvtrgywnraeesaeafvg...drfltgdigyvdrdgyfflvdrkkdmiisggfnvypqmieqaiyelpavqevivigipdqyrgeaakafvklrega..kpfsldelraflagklgkhelpvavelvdelprtsvgklsrhelr 541
                  r+ity ++   + + a a++r g+ k   v++y+  +p+  + ++ + + ga    +       al +++s + ++ lit+d+   +   +alk + +  l +l    iv +   w +    ++  a+     r v++ ++v    +      + a+d  ++ yt g+tg pkg + t g  t    +y    ++   + +  +   cv     i   t ++   l +g    + +   v   +  + d ++ ++ t f   pt    l  + d  ++k dlssl ++gs g p+  e  + +     k +  +   +  tet     t+ p   p kpgs  l + g++  v++    k+   p   g+    + ++   p ++r      e     + +   + ++tgd    d dgy f++ r  d++   g  +    +e a+  + av +  v+g p + +g++  afv l  g    p  + elr  ++  +g    p  + +   lp t  gk+ r  lr
  MMETSP1061-20121228|16389_1 127 RKITYDQVLRKVCQIANAMVRMGVQKGDIVTIYMPMIPELAMTMLACARIGAVHSVVFAGFSAEALGQRISAAKSKHLITADIGrrGGKTIALKDIVNDALTKLdcdsIVEHVMVWERfygGAESPAPYEMKERDVRMDSLVAVQRPYCPPTHMDAEDNLFILYTSGSTGNPKGLVHTTGGYT----LYAKMTTQITFDLAPGDIFACVADCGWITGHTYVVYGPLLNGSTSFMFESTPVypdEGRYWDmVQRHKITQFYTAPTAIRLLmrSGDEPVKKYDLSSLKVLGSVGEPINPEAWRWYYEvvgKSNCTVVDTYWQTETGGHiITNLPGITPMKPGSCTLPFYGVDTAVLCPTTGKELTEPDGNGNfhgvMALKQpwPGMARTCLGDHERFLTVYYKpypGYYFTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVVGKPHDIKGQSICAFVMLTAGYeeSPELMKELRMAVRSEIGGFCSPDMIVVSPSLPMTRSGKIMRRILR 649
                  89******999**************************************9996555544455679****************97522334555555444443333222233334444431102334466777889999999987666656666789999999*************988877665....566666666666666677899999999*****9999999999987777665442224455552677899********86555124567799********************99987661225555677777789987652688999*******************9998877777666544431111445541156777666666665555543233789***********************************************************************96226999************************************99887 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.7   0.0   2.4e-28   7.6e-26       1     440 [.     130     646 ..     130     648 .. 0.83

  Alignments for each domain:
  == domain 1    score: 88.7 bits;  conditional E-value: 2.4e-28
    TIGR01923   1 tfaeldkeaarlAkalkaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslleekedlqaisldeleaeae...............................aeevs...............lsasfsldkiatlifTSgstGkpKavvqtfrnhyasav.gsaeklgftesdnWLlsLPlyHvsGls.ilfrallegatlkivdkf....aaeqllesianekvthiSlVptqLkrlleesss..epeslrki.LLG..Gsaipapl....ieeaqekglpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd...........keghgeilvkga..nlmkgYlekge.lteavee..qGwlktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeDsefGqvPvayikses.....eiskakltaylkeklaKyKvPiafekldelpkeasgKilRn 440
                  t+ ++  ++ ++A+a+   +v+kgd+v+++++   el++++la+ ++g++  ++   ++++ l + ++  k++ l+t++  ++ +  ++i+l+++   a                                +                     ++++ ++   +++TSgstG+pK+ v+t + +   a+ +++ ++ + + d    +     + G + +++  ll+g t  + +      ++    ++++++k+t     pt ++ l+++  +  + + l  +  LG  G+ i  +      e   + + ++  +y  TEt   ++t  + ++  k++s   p  +v+ ++  +             + hg + +k +   ++++ l  +e + ++  +   G++ tgD    d +g+ ++ +R dd++   G  i  +e+E++l  +++v++a+vv+k+ +  Gq   a++ + +     ++  ++l   ++++++ +  P ++++ + lp++ sgKi R+
  MMETSP1061-20121228|16389_1 130 TYDQVLRKVCQIANAMVRMGVQKGDIVTIYMPMIPELAMTMLACARIGAVHSVVFAGFSAEALGQRISAAKSKHLITADIGRR-G-GKTIALKDIVNDALtkldcdsivehvmvwerfyggaespapyemkE---RdvrmdslvavqrpycPPTHMDAEDNLFILYTSGSTGNPKGLVHTTGGYTLYAKmTTQITFDLAPGDIFACVADCGWITGHTyVVYGPLLNGSTSFMFESTpvypDEGRYWDMVQRHKITQFYTAPTAIRLLMRSGDEpvKKYDLSSLkVLGsvGEPINPEAwrwyYEVVGKSNCTVVDTYWQTETGGHIITNLPGITPMKPGSCTLPFYGVDTAVLCPTtgkeltepdgnGNFHGVMALKQPwpGMARTCLGDHErFLTVYYKpyPGYYFTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVVGKPHDIKGQSICAFVMLTAgyeesPELMKELRMAVRSEIGGFCSPDMIVVSPSLPMTRSGKIMRR 646
                  6888889999******************************************************************9999884.4.5888898888888766777777888888888887777777655551...0555666666666665889***************************998877761556699*******************8747899******99887765233366899***********************99987674444444324554489998775111145677899***************************************999777666777775554455888999985337899999885514444333226***************************999****************************************99876644355567889999****************************97 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00048      0.15      24     104 ..     127     207 ..     121     241 .. 0.89
   2 !   17.6   0.0   7.7e-07   0.00024     138     160 ..     279     301 ..     255     320 .. 0.86
   3 !   42.2   0.0   2.7e-14   8.4e-12     376     500 ..     528     650 ..     504     654 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00048
    TIGR01734  24 qeltykeLkeesdklaaalqerlleekePiivfGkqefemlvaflgsiksGhayiPvDtsipleriekikeaaepelviev 104
                   + ty ++ +++ ++a+a+ +  +++ + + ++  + +e+ +++l+  + G  +  v +  + e + + ++aa+++ +i++
  MMETSP1061-20121228|16389_1 127 RKITYDQVLRKVCQIANAMVRMGVQKGDIVTIYMPMIPELAMTMLACARIGAVHSVVFAGFSAEALGQRISAAKSKHLITA 207
                  689************************************************999999999999999999999999888865 PP

  == domain 2    score: 17.6 bits;  conditional E-value: 7.7e-07
    TIGR01734 138 avkeddnyyiiytsGstGkPkGv 160
                   ++ +dn +i+ytsGstG+PkG 
  MMETSP1061-20121228|16389_1 279 HMDAEDNLFILYTSGSTGNPKGL 301
                  56789*****************6 PP

  == domain 3    score: 42.2 bits;  conditional E-value: 2.7e-14
    TIGR01734 376 ayrtGDagtieddgllfyqGrlDfqiklnGyrieLedieanlkkskyikeavvvPkynkdekveaLiaavvakeedfekelkltkaikkeLkkilmeymiPrkfiykdklpltanGkiDrkalae 500
                   y tGD+++ + dg+ f+ Gr+D  + + G+ri   ++e+ l     + +a+vv k  +d k +++ a+v+ +   +e+  +l k+++  + + +  +  P  ++   +lp+t  Gki r+ l +
  MMETSP1061-20121228|16389_1 528 YYFTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVVGKP-HDIKGQSICAFVMLTAG-YEESPELMKELRMAVRSEIGGFCSPDMIVVSPSLPMTRSGKIMRRILRK 650
                  378*****************************************************9.99999999999998765.66667788**********************************9998866 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   0.0   4.5e-12   1.4e-09     265     459 ..     123     328 ..     105     396 .. 0.77
   2 !    5.7   0.0    0.0013      0.41     671     734 ..     520     583 ..     508     620 .. 0.77
   3 ?   -1.4   0.0      0.17        55     779     819 ..     605     645 ..     588     649 .. 0.87

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 4.5e-12
    TIGR03443 265 ssktreftykqideasnilahyllktGikrgdvvmvyasrgvdlvvavlGvlkaGatfsvidPayPParqtiylsvakPraliv..lekaGeldelvedyied...elelvteipalklqdd...GsleGgklekeetdvlasyeklkdkktgvvvGPds..nptlsftsGseGiPkGvkGrhfslayyfpWmak.rfglsekdkf 459
                   s++r++ty q+ +    +a+++++ G+++gd+v++y     +l +++l   + Ga+ sv+   +  +     +s ak + li+  + + G  +  ++d+++d   +l+  + + ++ + +    G+ + +  e +e dv  ++    +++       d+  n  + +tsGs+G PkG+       + y +  ++ +f+l+  d f
  MMETSP1061-20121228|16389_1 123 PSDVRKITYDQVLRKVCQIANAMVRMGVQKGDIVTIYMPMIPELAMTMLACARIGAVHSVVFAGFSAEALGQRISAAKSKHLITadIGRRGGKTIALKDIVNDaltKLDCDSIVEHVMVWERfygGAESPAPYEMKERDVRMDSLVAVQRPYCPPTHMDAedNLFILYTSGSTGNPKGLVHTTGGYTLYAKMTTQiTFDLAPGDIF 328
                  5789****************************************************************999999*********8224444544444555555411147888999999888752214444555667777876666555555554444444400445679**********9766666666655544435666666655 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0013
    TIGR03443 671 fwlgprdrlyrtGdlGrylPdGnvecsGraddqvkirGfrielGeidthlsrhPlvrenvtlvr 734
                   +++p    y tGd      dG     Gr dd + + G ri   e++  l  h  v +   + +
  MMETSP1061-20121228|16389_1 520 VYYKPYPGYYFTGDTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVVGK 583
                  57777777899999999999*********************************99987655444 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.17
    TIGR03443 779 yrklikdikeylkkklasyavPtvivplkklPlnPnGkvdk 819
                    +l+k+++  ++  +  ++ P +iv+   lP+   Gk+ +
  MMETSP1061-20121228|16389_1 605 SPELMKELRMAVRSEIGGFCSPDMIVVSPSLPMTRSGKIMR 645
                  4589**********************************965 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.0    0.0027      0.85      95     145 ..     283     331 ..     277     361 .. 0.65
   2 !   34.2   0.0   7.2e-12   2.3e-09     281     385 ..     533     643 ..     527     644 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0027
    TIGR02372  95 etarltfatsGstgtPkPvthswaaLlreaealakalgerpapvravialv 145
                  e   +++ tsGstg Pk + h+    +  a+   ++     ap+  + a+v
  MMETSP1061-20121228|16389_1 283 EDNLFILYTSGSTGNPKGLVHTTGGYTLYAKMTTQITF-DLAPG-DIFACV 331
                  55668899*************99887776664444433.33343.455555 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 7.2e-12
    TIGR02372 281 drlrWddervfvieGrldeilqvgGvnvspghvkdvLeaepavealav.....rldGerLkafivvaedadee.eleaeLrataaehLpaparPddlrfgteLPrtaaGkl 385
                  d +  d ++   i Gr+d+++ v+G  +  ++v++ L  + av+++av      ++G+ + af+   ++ +e+ el +eLr  +  ++     Pd + ++  LP t+ Gk+
  MMETSP1061-20121228|16389_1 533 DTVSRDSDGYHFIIGRMDDVMNVSGHRIGTAEVESALVGHAAVAQAAVvgkphDIKGQSICAFVMLTAGYEESpELMKELRMAVRSEIGGFCSPDMIVVSPSLPMTRSGKI 643
                  667778889999***********************************93333335688999***99988766439**********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.71u 0.18s 00:00:00.88 Elapsed: 00:00:00.57
# Mc/sec: 1545.18
//
Query:       MMETSP1061-20121228|16432_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1178.80
//
Query:       MMETSP1061-20121228|16441_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1151.90
//
Query:       MMETSP1061-20121228|16433_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2556.68
//
Query:       MMETSP1061-20121228|16438_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-14   48.8   0.0    7.6e-14   48.3   0.0    1.2  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    2.8e-05   21.5   0.0    7.2e-05   20.2   0.0    1.6  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    0.00035   17.1   0.0     0.0013   15.2   0.0    1.8  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.3   0.0   5.5e-17   7.6e-14       3     187 ..      35     215 ..      33     298 .. 0.79

  Alignments for each domain:
  == domain 1    score: 48.3 bits;  conditional E-value: 5.5e-17
    TIGR03903   3 ghkvaikllRedaaeeerlvaRFrReialCarLshPniva....LlDsGeaedgllFavFeyveGrtlrevLaad.G.aLpaaetgrLmlqvLDalaaahd.aGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkr 187
                  g+ va+k++ +  +  +    + + ei++  r   P iv      +    +++g ++ v ey eG  + ++L a+ G +Lp     ++ + ++ +l   h  a v hRD+k  n++++ ++   h k+ DFG++a l+++ +       + + v+GsP + aPe +R+     ++D+++ G+  +e   G +
  MMETSP1061-20121228|16438_1  35 GAVVAVKVIANA-SSSKSEEEKIKGEIEILSRCDSPYIVGyfecFIKPATSKPGEMWIVMEYCEGGSMTDILEANaGySLPEDCIRAVCASIVLGLEYLHGiANVCHRDIKCGNVLLTSEG---HVKLADFGVSAELSNTLN-------KRKTVVGSPYWMAPEVIRESHYDGRADVWSLGITCIEMAEGAP 215
                  677999*99877.6667778899****************722225678999*********************7762523555555567889999*****974789************9876...78999******9987666.......67779*******************************9888764 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   5.3e-08   7.2e-05      68     138 ..      85     166 ..      80     177 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 5.3e-08
    TIGR03724  68 dpeekkivmeyiegkklkdlleekel.........ellkevGelvgklHk.agivhgDlttsNiiv.kddklyliDfGLgkk 138
                  +p e+ ivmey eg  + d+le++            ++ ++   +  lH  a+++h D+   N+++ +++++ l DfG +  
  MMETSP1061-20121228|16438_1  85 KPGEMWIVMEYCEGGSMTDILEANAGyslpedcirAVCASIVLGLEYLHGiANVCHRDIKCGNVLLtSEGHVKLADFGVSAE 166
                  567899****************9776899998888888888888999**7579************94588999*****9865 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0      0.11   1.4e+02     127     148 ..      21      43 ..      16      59 .. 0.84
   2 !   15.2   0.0   9.5e-07    0.0013     231     309 ..      88     170 ..      82     179 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.11
    TIGR01982 127 ASiaQvhkAvlve.gkeVavKvl 148
                   S + v++A+ ++ g  VavKv+
  MMETSP1061-20121228|16438_1  21 GSFGAVYRATHKSsGAVVAVKVI 43 
                  68899****9876269999**97 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 9.5e-07
    TIGR01982 231 ervltlewidgipvsdleklkeaGldl..kalaenlvesflkqvlrdg...fFHaDlHpGNilvakdgkiialDfGivgrlsee 309
                  e  +++e+ +g +++d+ + + aG+ l    + +  ++++l   + +g   + H D+  GN+l++++g++ + DfG+ ++ls+ 
  MMETSP1061-20121228|16438_1  88 EMWIVMEYCEGGSMTDILEAN-AGYSLpeDCIRAVCASIVLGLEYLHGianVCHRDIKCGNVLLTSEGHVKLADFGVSAELSNT 170
                  55689***********98765.5655411557777777888888887722258************************9999874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2479.51
//
Query:       MMETSP1061-20121228|16461_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-55  186.5   0.0    1.5e-55  186.1   0.0    1.2  1  TIGR00755 ksgA: dimethyladenosine transferase
  ------ inclusion threshold ------
      0.019   12.2   0.0      0.029   11.6   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
      0.023   12.0   0.1      0.035   11.4   0.0    1.2  1  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific


Domain annotation for each model (and alignments):
>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.1   0.0   1.1e-58   1.5e-55       2     252 ..      91     387 ..      90     391 .. 0.84

  Alignments for each domain:
  == domain 1    score: 186.1 bits;  conditional E-value: 1.1e-58
    TIGR00755   2 rpkkslGQnflidesvlqkiveaaevee..........sdvvlEiGpGlGaLTeellekakk..vvaiEiDkrlaekLrkkleleekleviegDalkldleefakke....kvvsNlPYnissplvfkllk...kkklkeavlmvQkEvaerlvAkpgskeYgrlsvlvqllaevelvlkvppsaFyPkPkVeSavvrlekkeek....plavkdeellekllkaaFsqrrKtlrnnlkk.kllkkekleevleqekldek.........................kraeklsiedflkl 252
                  rpk+slGQnfl d +++ k+++a +  +           + ++E GpG+GaLT++l+ek+ +  +  iE+D+r +e+L +++     l v ++D+l++  +++a+++    ++++NlPY+i+s+++f l        ++ a++++Q+Ev++r+vA  + k+Yg lsv+ q++a+v+  +k+pp++FyP+PkV+Sa++ l+          la    + + +++++aF qrrKt+rn+lkk   + ke l e+++++ l+                           kr+e+l++ +++++
  MMETSP1061-20121228|16461_1  91 RPKQSLGQNFLRDGNTVAKMIKAFHEDAtkrgdrpgkpLTSIVELGPGAGALTDRLVEKYGTdvLQCIEVDPRAIEILAERYP---ALLVHHQDVLQVSYPDMADEQgeplVIIGNLPYYITSQILFALADashYGAVDCATVTMQWEVGQRMVAPTSCKDYGILSVVFQTYADVRCHFKIPPTVFYPQPKVDSALLGLHFLGPAklrqRLAGVRPRDFRTVVTTAFRQRRKTIRNSLKKlPGIDKEILLEKIDAAPLPLPdsvisarergdafalsqelpadwmrKRPEQLTPGQLVEV 387
                  89*********************998888899999998899******************8776699**************996...9**************777666778999*****************54545578999********************************************************99866554122245578899**********************7655555555555544444433556666777777777777777777777777777777766 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   2.1e-05     0.029      86     167 ..     126     207 ..     106     219 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 2.1e-05
    TIGR03534  86 kkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdllealeekgkfdlivsNPPYi 167
                   k+ +++++lg G Ga++  l +++ +  + +++++++A+++ ++   +l +++ ++l+ ++ +  +e+g+  +i+ N PY 
  MMETSP1061-20121228|16461_1 126 GKPLTSIVELGPGAGALTDRLVEKYGTDVLQCIEVDPRAIEILAERYPALLVHHQDVLQVSYPDMADEQGEPLVIIGNLPYY 207
                  445679*******************99999**********************99999999999999999***********84 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.6e-05     0.035      88     176 ..     130     219 ..     107     243 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.6e-05
    TIGR03704  88 lvvvdlccGsGavgaalaaaldavelhaadidpaavrcarrnladaGgrvyeGdlye.alpt..elrGrvdillanvpyvptdeiallppea 176
                  + +v+l  G+Ga++  l+++  +  l+ +++dp a++       +    v++ d+ + + p+  + +G+  +++ n py  t +i    ++a
  MMETSP1061-20121228|16461_1 130 TSIVELGPGAGALTDRLVEKYGTDVLQCIEVDPRAIEILAERYPALL--VHHQDVLQvSYPDmaDEQGEPLVIIGNLPYYITSQILFALADA 219
                  4799********************************99877776654..8999977625665224579999999*****9999997766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|16470_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-96  318.6   0.1    8.8e-96  318.3   0.1    1.1  1  TIGR01240 mevDPdecarb: diphosphomevalonate decarboxylase
    0.00015   19.2   0.2     0.0003   18.2   0.0    1.5  2  TIGR00549 mevalon_kin: mevalonate kinase
    0.00039   17.7   0.1    0.00057   17.1   0.0    1.3  1  TIGR01920 Shik_kin_archae: shikimate kinase


Domain annotation for each model (and alignments):
>> TIGR01240  mevDPdecarb: diphosphomevalonate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.3   0.1   6.4e-99   8.8e-96       1     304 [.      13     337 ..      13     338 .. 0.93

  Alignments for each domain:
  == domain 1    score: 318.3 bits;  conditional E-value: 6.4e-99
    TIGR01240   1 akvtayvnialikyWGkkneklilPtnssisltLea..lftltsvaladefesdelylnGvlqdeke.nekvsnilddlrqeakese.....kvkvvsqnnlPtaaGLassasGlaaLvsaidklyklqld.dkelsriarkgsGsacrslfGgyvaWekgka.........dlssaavkveddsdedklamvvlvvndakkevssreGmkltvetselfkewvesvvid.fevlkkaiktkdfeklgketeanalslhattlaaqPPfsylsdeskkaieavkelrq..egiavyftldaGPnvkvlvleedlsklaetltklf 304
                  a+v a++nia ikyWGk + k + Ptn+s+s+tL++  l++ t +a ++ fesd+l+lnG++++  +  ++   ++d ++ +a + +     kv+v s n +PtaaGLassa+G+aaLv a+++l++       +l+ +ar+gsGsacrsl+Gg+vaW  g             +s+av+++d++++++l++v+lvv+dakk+ ss+ Gm  +v+ts+l   ++  vv++ +e + ka   kdfe++g++t+++++++h+ + ++ PP++y++d s++++  v+  ++  +++  ++t+daGPn+++++le++  ++ + ++  f
  MMETSP1061-20121228|16470_1  13 ATVSAPTNIACIKYWGKADAKFNTPTNDSVSVTLDQsdLRAVTTAAASKRFESDRLWLNGTEEEGAAsSKRFRACVDGVKLLAADPAkwkdlKVHVSSYNTFPTAAGLASSAAGYAALVAALAELMDATEAyPGQLTTLARQGSGSACRSLYGGFVAWRAGTPegrsddeipWSDSLAVQIADETHWPELRAVILVVSDAKKDTSSTAGMSTSVATSTLLPHRISTVVPErMEAIEKAFLSKDFETFGELTMRDSNQFHSVCADTYPPIFYMNDVSRQIVRIVHAYNKwaGETRAAYTYDAGPNAVLYTLEKHSVEVGALMAHYF 337
                  5899*******************************999***********************99876526889******99988766677778**********************************976551689***********************99865444443333258*******************************************************9**********************************************************99************************9998887665 PP

>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   2.2e-07    0.0003      66     118 ..      87     144 ..      18     157 .. 0.61
   2 ?   -2.9   0.0      0.57   7.8e+02     204     229 ..     237     262 ..     199     269 .. 0.54

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 2.2e-07
    TIGR00549  66 iaavlskleekkeaa..lkveies..eipigaGLGSSAavavaliaalaalfg.sels 118
                   ++ ++ l++   +   lkv++ s  + p  aGL SSAa  +al+aala+l++  e+ 
  MMETSP1061-20121228|16470_1  87 CVDGVKLLAADPAKWkdLKVHVSSynTFPTAAGLASSAAGYAALVAALAELMDaTEAY 144
                  3333333322222222455555553389**********************99844444 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.57
    TIGR00549 204 leaigelvkeakaaledkdveqlgel 229
                     + e  ++ ++a+ +kd+e++gel
  MMETSP1061-20121228|16470_1 237 STVVPERMEAIEKAFLSKDFETFGEL 262
                  23333444445556666666666665 PP

>> TIGR01920  Shik_kin_archae: shikimate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   4.2e-07   0.00057      69     106 ..     103     143 ..      66     227 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 4.2e-07
    TIGR01920  69 gleveves..eiPagsGLksSsAlvnAlvlavlkakg.eei 106
                  +l+v+v s   +P+++GL sS+A  +Alv+a +++++  e+
  MMETSP1061-20121228|16470_1 103 DLKVHVSSynTFPTAAGLASSAAGYAALVAALAELMDaTEA 143
                  55666665337*********************999874445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1960.98
//
Query:       MMETSP1061-20121228|16478_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 1236.79
//
Query:       MMETSP1061-20121228|16485_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 332.84
//
Query:       MMETSP1061-20121228|16513_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|16515_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-46  155.4   0.1    7.2e-46  154.2   0.0    1.6  2  TIGR02881 spore_V_K: stage V sporulation protein K
    2.4e-35  120.0   0.1    8.3e-35  118.2   0.0    1.7  2  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    1.1e-31  108.0   0.0    1.9e-31  107.2   0.0    1.3  1  TIGR02880 cbbX_cfxQ: CbbX protein
    1.5e-05   22.0   0.1    9.2e-05   19.4   0.0    2.0  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
     0.0015   14.9   0.1       0.12    8.7   0.0    2.2  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
     0.0033   13.9   0.0      0.077    9.4   0.0    2.1  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0045   14.1   0.0     0.0079   13.3   0.0    1.3  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
     0.0094   12.9   0.0      0.016   12.2   0.0    1.3  1  TIGR01242 26Sp45: 26S proteasome subunit P45 family
  ------ inclusion threshold ------
      0.011   13.3   0.0      0.022   12.2   0.0    1.5  1  TIGR01351 adk: adenylate kinases
      0.015   13.1   0.0      0.041   11.7   0.0    1.8  1  TIGR02173 cyt_kin_arch: putative cytidylate kinase


Domain annotation for each model (and alignments):
>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.87   3.6e+02       3      23 ..     298     318 ..     296     326 .. 0.79
   2 !  154.2   0.0   1.8e-48   7.2e-46      41     231 ..     357     557 ..     350     589 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.87
    TIGR02881   3 keleklvGleevkelikeiya 23 
                  + l++++Gl+++k++++ +  
  MMETSP1061-20121228|16515_1 298 ELLSSIIGLDHIKSQLRGLRR 318
                  56899********99987765 PP

  == domain 2    score: 154.2 bits;  conditional E-value: 1.8e-48
    TIGR02881  41 qvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideaysl...arGGekdfGkeaidtlvkemedkr.....eel.vlilaGysdemdyflslnPGlksrfpisldfpdytveelleiakkmveereyklteeakak.lreklakvksasekefsnarlvrnli 231
                   + hm+f GnPG+Gkt+varllak ++el++l k +++ever dlvG     t  kt+evi +a GG+lfideay l   ++  + d G ++i+ ++++++d++     +++ ++ilaG++ em+ f+ +   l+ rfpi+++fpdy+  el +i   + + + + l+e+ ka+ + + l +++s++ +   n+r+   l+
  MMETSP1061-20121228|16515_1 357 RADHMVFMGNPGSGKTAVARLLAKAYHELGILRKPKFLEVERMDLVGRDKSTTVMKTKEVIDEARGGILFIDEAYNLgiaSKRNKLDTGVDSINEIIRSIDDSSkkrgdDNFpLIILAGFPVEMNTFMVFQGELRKRFPITFEFPDYSCVELAQIFMDLANAKGFDLAEDLKAStIARLLEEETSMQWRGERNGRISEMLL 557
                  677*************************************************************************93333444569**************986222223455789******************************************************9876155566666777888899999655444 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.29   1.2e+02     273     297 ..     298     322 ..     295     327 .. 0.86
   2 !  118.2   0.0     2e-37   8.3e-35     311     472 ..     357     524 ..     353     559 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.29
    TIGR03922 273 aeLakqiGlervkeqvaalkssvev 297
                    L  +iGl+++k+q++ l+ + e+
  MMETSP1061-20121228|16515_1 298 ELLSSIIGLDHIKSQLRGLRRTAEI 322
                  67999************99988765 PP

  == domain 2    score: 118.2 bits;  conditional E-value: 2e-37
    TIGR03922 311 rskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLggvlFlDEayaLvekrdgakddfGleaidtLLarlEnd...R..drl.vviiAGYekdlDklLevneGLrsRFtrkieFesYspdElveiakrmaeerdsvld 472
                  r+ H++++G PG Gkt++Ar +ak y  lg+lrkp+  Ev+R dl+g+  + +  kt+e+id+a gg+lF+DEay L    + +k d G+  i+ ++  +++    R  d++  +i AG+  +++ ++     Lr+RF  + eF+ Ys  El +i   +a+++   l 
  MMETSP1061-20121228|16515_1 357 RADHMVFMGNPGSGKTAVARLLAKAYHELGILRKPKFLEVERMDLVGRDKSTTVMKTKEVIDEARGGILFIDEAYNLGIASKRNKLDTGVDSINEIIRSIDDSskkRgdDNFpLIILAGFPVEMNTFMVFQGELRKRFPITFEFPDYSCVELAQIFMDLANAKGFDLA 524
                  789**************************************************************************999999999***********99986422234355635678***********99999**********************9999988753332 PP

>> TIGR02880  cbbX_cfxQ: CbbX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.2   0.0   4.6e-34   1.9e-31      58     221 ..     358     529 ..     348     569 .. 0.88

  Alignments for each domain:
  == domain 1    score: 107.2 bits;  conditional E-value: 4.6e-34
    TIGR02880  58 slhmsftgnpgtgkttvalrmakilhrlgyvrkghlvsvtrddlvgqyightapktkevlkramggvlfideayyl..yrpdnerdygqeaieillqvmen...qr.ddl..vvilagykdrmdsffesnpglssrvahhvdfpdyseeellaiaellleeqqyrlsaeaee 221
                  + hm f gnpg+gkt+va  +ak  h+lg +rk + + v r dlvg+    t  ktkev+  a gg+lfideay l      n+ d g ++i+ +++ +++   +r dd   ++ilag+   m++f+  +  l+ r     +fpdys  el +i   l +++ + l+++ ++
  MMETSP1061-20121228|16515_1 358 ADHMVFMGNPGSGKTAVARLLAKAYHELGILRKPKFLEVERMDLVGRDKSTTVMKTKEVIDEARGGILFIDEAYNLgiASKRNKLDTGVDSINEIIRSIDDsskKRgDDNfpLIILAGFPVEMNTFMVFQGELRKRFPITFEFPDYSCVELAQIFMDLANAKGFDLAEDLKA 529
                  56************************************************************************98334567999*******8777776642224423323479*****************************************99999999999877654 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.2e-07   9.2e-05      29     188 ..     357     533 ..     349     545 .. 0.63

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.2e-07
    TIGR00635  29 aldhvllyGPPGlGkttlakiiakelgvklkitsgpale..kpgDlaa.......ilta..le..egdvlfiDeihrlskave.ellypamedfkldivigkgpaaksv.rldlapftlvGattraG...kltsPLrdrfgiverlefYseeeleeivkrsaklleleieee.aaleia 188
                    dh++++G PG Gkt++a+++ak    +l i   p++      Dl++       + t+  ++  +g +lfiDe + l  a + + l + ++  + +i+   + ++k     + +   l G    +         Lr+rf i+ ++  Ys  el++i +  a+    ++ e+ +a++ia
  MMETSP1061-20121228|16515_1 357 RADHMVFMGNPGSGKTAVARLLAKAY-HELGILRKPKFLevERMDLVGrdksttvMKTKevIDeaRGGILFIDEAYNLGIASKrNKLDTGVDSIN-EIIRSIDDSSKKRgDDNFPLIILAGFPVEMNtfmVFQGELRKRFPITFEFPDYSCVELAQIFMDLANAKGFDLAEDlKASTIA 533
                  57*********************875.4566666666531123455542221110222222332246799****999987765145666666544.44444444444441455666667776655441113456899999999999999999999999888887777776542455565 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0   0.00028      0.12     172     203 ..     355     383 ..     346     409 .. 0.75
   2 !    3.9   0.0    0.0078       3.2     260     280 ..     416     436 ..     404     473 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00028
    TIGR02903 172 spfpqhiilyGppGvGkttaarlaleeakklk 203
                   p  +h+++ G pG Gkt++arl     k  +
  MMETSP1061-20121228|16515_1 355 RPRADHMVFMGNPGSGKTAVARLLA---KAYH 383
                  68889*****************964...3344 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0078
    TIGR02903 260 lvteahGGvlfideiGeldvl 280
                  ++ ea GG+lfide  +l + 
  MMETSP1061-20121228|16515_1 416 VIDEARGGILFIDEAYNLGIA 436
                  6789**********9887654 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00019     0.077      84     108 ..     356     380 ..     348     400 .. 0.82
   2 ?    2.2   0.0     0.028        12     171     188 ..     417     434 ..     408     450 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00019
    TIGR02902  84 pnpqhviiyGppGvGktaaarlvle 108
                  p   h++  G pG Gkta arl  +
  MMETSP1061-20121228|16515_1 356 PRADHMVFMGNPGSGKTAVARLLAK 380
                  8889*****************9754 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.028
    TIGR02902 171 vtkahGGvlfideiGelh 188
                  + +a GG+lfide  +l 
  MMETSP1061-20121228|16515_1 417 IDEARGGILFIDEAYNLG 434
                  6789*********87775 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.9e-05    0.0079      39      60 ..     361     382 ..     347     386 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.9e-05
    TIGR02397  39 yLfsGprGvGKTsiArilAkal 60 
                   +f+G+ G GKT++Ar+lAka 
  MMETSP1061-20121228|16515_1 361 MVFMGNPGSGKTAVARLLAKAY 382
                  58******************95 PP

>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   3.9e-05     0.016     142     239 ..     344     447 ..     339     457 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.9e-05
    TIGR01242 142 lkkpelfeevGieppkGvllyGppGtGktllakavaeet.......natfirvvgselvkkyiGeGarlvrevfklakekapsiifideid..aiaakrldsstsGd 239
                  +  p l e+ G      +++ G pG+Gkt +a+ +a+         +  f+ v   +lv +     +  v +  ++  e    i+fide     ia+kr + +t+ d
  MMETSP1061-20121228|16515_1 344 MIPPSLAEDTGRPRADHMVFMGNPGSGKTAVARLLAKAYhelgilrKPKFLEVERMDLVGRDK---STTVMKTKEVIDEARGGILFIDEAYnlGIASKRNKLDTGVD 447
                  55688889999888889999*********8888887654111111144566666666666544...45566666666777789******8623599*****999977 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   5.5e-05     0.022       2      24 ..     361     383 ..     360     388 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.5e-05
    TIGR01351   2 lvllGpPGsGKGTqakrlaeklg 24 
                  +v++G PGsGK  +a+ la+ ++
  MMETSP1061-20121228|16515_1 361 MVFMGNPGSGKTAVARLLAKAYH 383
                  89****************99875 PP

>> TIGR02173  cyt_kin_arch: putative cytidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   9.9e-05     0.041       4      25 ..     362     383 ..     360     420 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.9e-05
    TIGR02173   4 visGpPGsGkttvakilaekls 25 
                  v  G+PGsGkt+va+ la+ + 
  MMETSP1061-20121228|16515_1 362 VFMGNPGSGKTAVARLLAKAYH 383
                  5679**************9874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      181  (0.0441248); expected 82.0 (0.02)
Passed Vit filter:                        47  (0.0114578); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.49
# Mc/sec: 1610.81
//
Query:       MMETSP1061-20121228|16564_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 402.91
//
Query:       MMETSP1061-20121228|16555_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 2314.89
//
Query:       MMETSP1061-20121228|16571_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|16584_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 913.36
//
Query:       MMETSP1061-20121228|16587_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    7.5   6.9       0.32    7.2   4.8    1.0  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   4.8   7.7e-05      0.32     186     292 ..      67     175 ..      59     182 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 7.7e-05
    TIGR03591 186 elseeemleaiefgheeikevieaieelakevgkekleveak.eedeelkkkveelaeekelkealkie.ekqereealeevkeevleelaeeeeeeeeeeeekeikel 292
                   +see+++ea+e++++   +++ea +e  + + +++ e +a+  + +e ++   ++ +  ++++ +++    ++  ea++ v+e+++++ a+++ e+e+ee  k+ +++
  MMETSP1061-20121228|16587_1  67 LVSEEDVIEAVEIAEALWGKALEARKEANALIDRAEEEANASaGTAKEAENIFMDKSKPVSMEQLVQVDnAAKASLEATNLVNEAMKASDAADQLESEAEEALKRSEKI 175
                  589*****************************99888888774555666777778888888999999983444455556666666666666665555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.27
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|16614_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|16621_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.7   0.0      0.044   11.7   0.0    1.5  1  TIGR03504 FimV_Cterm: FimV C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03504  FimV_Cterm: FimV C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.1e-05     0.044      17      36 ..      29      48 ..      27      53 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.1e-05
    TIGR03504 17 gArelLeEVieeGdeaqkee 36
                 gA e Le V+eeGd+ +k e
  MMETSP1061-20121228|16621_1 29 GAGESLETVLEEGDAFMKTE 48
                 899***********999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|16624_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-05   20.9   0.0    0.00039   18.7   0.0    2.1  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       0.2   8.3e+02     118     128 ..     265     275 ..     224     290 .. 0.77
   2 !   18.7   0.0   9.5e-08   0.00039      89     125 ..     323     360 ..     292     368 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.2
    TIGR01444 118 GaEleVLrgla 128
                  G+E eVL++l 
  MMETSP1061-20121228|16624_1 265 GFEQEVLQKLP 275
                  88999998864 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 9.5e-08
    TIGR01444  89 eieVevvtlddlveeag.lekvdllKiDvEGaEleVLr 125
                  e++ e    ++l e+a+    +++lKiDvEG+E+ V+ 
  MMETSP1061-20121228|16624_1 323 ETAKEFLPYSKLWEHANiERAPKFLKIDVEGFEFGVIP 360
                  3334556677888888833469**************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1748.86
//
Query:       MMETSP1061-20121228|16633_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1087.34
//
Query:       MMETSP1061-20121228|16645_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.5e-158  523.0   0.0   8.8e-158  522.8   0.0    1.0  1  TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
    3.3e-99  329.7   0.0    3.9e-99  329.5   0.0    1.0  1  TIGR00167 cbbA: ketose-bisphosphate aldolases
    5.4e-40  135.7   0.0    2.2e-39  133.7   0.0    1.9  1  TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
    3.9e-22   76.5   0.0      3e-21   73.6   0.0    2.4  1  TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
    4.8e-15   53.3   2.1    3.7e-10   37.2   0.4    3.4  3  TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype


Domain annotation for each model (and alignments):
>> TIGR01520  FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  522.8   0.0  1.1e-160  8.8e-158       3     355 ..      58     412 ..      56     414 .. 0.98

  Alignments for each domain:
  == domain 1    score: 522.8 bits;  conditional E-value: 1.1e-160
    TIGR01520   3 dklktgvilgedvaklfevakeekfaiPainvvssetvnaaleaardakspiilqfsnggaafiaGkGvkdeaekaasiaGaiaaaeyvrsiaekygvpvvlhtdhCakkllpyvdglleadekyfkkegkPlfsshmldlseepieenieiakkylkrmakiklileieiGitGGeedGvdneeadkeelytkPedvekvyeelskispkfsiaaafGnvhGvykpGnvklrPdiladgqeyvaeklglke...akplsfvfhGGsGstkeeikealsyGvvkvnvdtdtqyaalegildyvlknedylqsqvGnpkgeekpnkkvydPrvwlreaeksmkarvekaleelnain 355
                  + +++gv  g+ + +l++ ake+ +aiPa+n+vs + +na leaar  ++pii+qfs gg++f+ GkG+ ++  +a +iaGa+++a ++r++ae+yg+pv+lhtdhC+k+llp+vdgl++a+e+y+k +g+Plfsshm+dlseep+een++i+ +yl rm ki l+le+e+GitGGeedGvdn ++  e+ly+kPe+++++yeel k+s  f++aaafGnvhGvy pGnvkl P+il + q+y++eklg ++   + p+sfvfhGGsGs +++i+ea+ yGv+k+n+dtdtq++++egi+++  k +dylq+q+Gnp+ge+kpnkk+ydPr  +r+ae+   +r+e+a+ +l++ n
  MMETSP1061-20121228|16645_1  58 ESIHPGVLSGKPMMDLLQHAKENGYAIPAVNCVSNSGINACLEAARANDAPIIIQFSSGGSQFYGGKGLDNSDYRA-AIAGAVSGAFHTRTMAEQYGIPVILHTDHCSKQLLPWVDGLIAASERYYKVHGEPLFSSHMIDLSEEPLEENLAICAEYLGRMEKIGLLLEMELGITGGEEDGVDNTDRPVEDLYSKPEEIYQTYEELMKVSEMFTVAAAFGNVHGVYSPGNVKLDPKILDKAQDYISEKLGDDApenKMPVSFVFHGGSGSDVSDIQEAIGYGVIKMNIDTDTQWSYWEGIKNFEAKYHDYLQGQIGNPDGEDKPNKKYYDPRECMRAAEVNTVKRLETAFADLKCQN 412
                  67899******************************************************************88888.9**************************************************************************************************************************************************************************976543477************************************************************************************************987 PP

>> TIGR00167  cbbA: ketose-bisphosphate aldolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  329.5   0.0  4.7e-102   3.9e-99       3     288 ..      67     412 ..      65     414 .. 0.99

  Alignments for each domain:
  == domain 1    score: 329.5 bits;  conditional E-value: 4.7e-102
    TIGR00167   3 lvdvkellekakeegyaipaiNvvnlesikavleaaeeaksPviiqasegaakyiaG............leaiaalvkalveaekytvPvvlHlDHga.............seesiaeavkagfsSvMiDaSeepfeeNieltkkvvelahkvgvsvEaElGilggeedgvdnskadesalytdpe....eakelvkksqvdalAaaiGnvHGvYkkepkkLkferleeiqklvs.............lplVlHGgsgipeeeikkaiklGvvKvNidTdlqlAfaeavreylkenkde..................ydprkylkeaekamkevvkekikelgsan 288
                  ++++  ll++ake+gyaipa+N+v+ + i+a leaa+  ++P+iiq+s+g++++++G             +a++++ +++++ae+y++Pv+lH+DH++             se +++ +++++fsS+MiD+Seep+eeN++++++++ +++k+g+ +E+ElGi+ggeedgvdn ++  ++ly++pe     ++el+k+s+++++Aaa+GnvHGvY+++++kL++++l++ q+++s             +++V+HGgsg+   +i++ai +Gv+K+NidTd+q++++e+++++ ++ +d+                  ydpr+ +++ae    +++++++++l+++n
  MMETSP1061-20121228|16645_1  67 GKPMMDLLQHAKENGYAIPAVNCVSNSGINACLEAARANDAPIIIQFSSGGSQFYGGkgldnsdyraaiAGAVSGAFHTRTMAEQYGIPVILHTDHCSkqllpwvdgliaaSERYYKVHGEPLFSSHMIDLSEEPLEENLAICAEYLGRMEKIGLLLEMELGITGGEEDGVDNTDRPVEDLYSKPEeiyqTYEELMKVSEMFTVAAAFGNVHGVYSPGNVKLDPKILDKAQDYISeklgddapenkmpVSFVFHGGSGSDVSDIQEAIGYGVIKMNIDTDTQWSYWEGIKNFEAKYHDYlqgqignpdgedkpnkkyYDPRECMRAAEVNTVKRLETAFADLKCQN 412
                  678999************************************************************************************************************************************************************************************99999********************************************************************************************************************************************************998 PP

>> TIGR01859  fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.7   0.0   2.7e-42   2.2e-39       4     263 ..      70     395 ..      68     411 .. 0.77

  Alignments for each domain:
  == domain 1    score: 133.7 bits;  conditional E-value: 2.7e-42
    TIGR01859   4 akellekakkekYavgafninnlellqaileaaeeeksPvivqvsegavkYlg........gikvvvalv......kalieklsivPvalhLDhGss.....yescikaika.....G...fssvmiDashlpleenlketkkvveiahakgvsveaelGklgGieddvveke....aeladideakk....lvketgvDaLaiaiGtshGkyk.gepkldferlkeikkll.............nlPlvlhGasGipeeqlkkaiklgiakvnidtdlrlaftaairkvle..................ekkdeydpRkilapare 263
                  + +ll++ak+++Ya++a+n      ++a leaa+++ +P+i+q s+g  ++ g         + +++++v      ++++e++  +Pv+lh Dh s+     ++  i+a +      G   fss miD s+ pleenl+   + +   ++ g+  e+elG  gG+ed+v++ +      +++++e+++    l+k +++ ++a+a G++hG y  g+ kld + l++ ++++             ++ +v hG+sG    ++++ai +g+ k+nidtd++ ++ + i+++ +                   +k+ ydpR  +  a+ 
  MMETSP1061-20121228|16645_1  70 MMDLLQHAKENGYAIPAVNCVSNSGINACLEAARANDAPIIIQFSSGGSQFYGgkgldnsdYRAAIAGAVsgafhtRTMAEQYG-IPVILHTDHCSKqllpwVDGLIAASERyykvhGeplFSSHMIDLSEEPLEENLAICAEYLGRMEKIGLLLEMELGITGGEEDGVDNTDrpveDLYSKPEEIYQtyeeLMKVSEMFTVAAAFGNVHGVYSpGNVKLDPKILDKAQDYIseklgddapenkmPVSFVFHGGSGSDVSDIQEAIGYGVIKMNIDTDTQWSYWEGIKNFEAkyhdylqgqignpdgedkPNKKYYDPRECMRAAEV 395
                  5799********************************************999988988888733344444411112145666666.*********9864433345566665432222235559***********************************************99752211568999*98762222666678999**********88516777777777664433222223333322104557***************************************99888999999*******9988677889***99987754 PP

>> TIGR01858  tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.6   0.0   3.6e-24     3e-21       6     246 ..      72     360 ..      65     370 .. 0.75

  Alignments for each domain:
  == domain 1    score: 73.6 bits;  conditional E-value: 3.6e-24
    TIGR01858   6 ellkeaqkgGyavpafnihnletlqvvvetaaelkspvilaGtpgtfkyag......teelvalv.........saaakkyelplalhldhhesl.....d.dikq.....kvaaG..vksvmidashlsfeenvklvkevvdfchrfdasveaelGrlgGveddlsvdee..dalytdpdea....kefveatGvdslavaiGtahGlyk.eapkldfdrlakirekvd.............vplvlhGasdvpdelvrrtielGiskvnvatelkiafsdalkayfi 246
                  +ll++a+++Gya+pa n      +++ +e+a   ++p+i+  + g  ++ g      +++  a++         +++a++y +p+ lh dh  +      d  i+      kv+    + s mid s  ++een+++  e +    +    +e elG  gG ed +   ++  + ly++p+e     +e+++ + + ++a a G  hG+y+    kld + l k ++ ++             v +v+hG+s+    +++++i  G+ k+n+ t+ + ++ + +k++ +
  MMETSP1061-20121228|16645_1  72 DLLQHAKENGYAIPAVNCVSNSGINACLEAARANDAPIIIQFSSGGSQFYGgkgldnSDYRAAIAgavsgafhtRTMAEQYGIPVILHTDHCSKQllpwvDgLIAAseryyKVHGEplFSSHMIDLSEEPLEENLAICAEYLGRMEKIGLLLEMELGITGGEEDGVDNTDRpvEDLYSKPEEIyqtyEELMKVSEMFTVAAAFGNVHGVYSpGNVKLDPKILDKAQDYISeklgddapenkmpVSFVFHGGSGSDVSDIQEAIGYGVIKMNIDTDTQWSYWEGIKNFEA 360
                  79**************************************988887776552222223455555422222222246899************98742323222232222222666434489********************************************98765543389*****9862222456667777889***********934568887777665433221111222222222778***************************************9865 PP

>> TIGR01521  FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       1.2     1e+03      66      79 ..      48      61 ..      47      62 .. 0.88
   2 !   37.2   0.4   4.5e-13   3.7e-10       3      85 ..      69     165 ..      68     287 .. 0.62
   3 !   12.5   0.0   1.5e-05     0.012     255     292 ..     324     361 ..     315     368 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 1.2
    TIGR01521 66 aaveeypdipvvlh 79
                 +a+e+yp++p  +h
  MMETSP1061-20121228|16645_1 48 CAIEKYPNLPESIH 61
                 689*******9998 PP

  == domain 2    score: 37.2 bits;  conditional E-value: 4.5e-13
    TIGR01521   3 slrqlldhaaergygvpafnvnnleqilaimeaadktdspvilqasrgars.yagevl....lrklvlaav..........eeypdipvvlhqdhgns 85 
                  ++  ll+ha e+gy +pa n      i a +eaa++ d+p+i+q s g  + y g+ l     r  + +av          e+y  ipv+lh dh ++
  MMETSP1061-20121228|16645_1  69 PMMDLLQHAKENGYAIPAVNCVSNSGINACLEAARANDAPIIIQFSSGGSQfYGGKGLdnsdYRAAIAGAVsgafhtrtmaEQY-GIPVILHTDHCSK 165
                  5889****************9999********************9987766154443311112334443331111111111233.5899999999765 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 1.5e-05
    TIGR01521 255 gvpveeivkgikfgvrkvnidtdlrlaataalrrvaak 292
                  g  v +i++ i +gv k+nidtd + +    ++++ ak
  MMETSP1061-20121228|16645_1 324 GSDVSDIQEAIGYGVIKMNIDTDTQWSYWEGIKNFEAK 361
                  77899******************998887777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 2208.28
//
Query:       MMETSP1061-20121228|16679_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1217.90
//
Query:       MMETSP1061-20121228|16689_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1820.67
//
Query:       MMETSP1061-20121228|16708_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 503.96
//
Query:       MMETSP1061-20121228|16720_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 401.71
//
Query:       MMETSP1061-20121228|16733_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1061-20121228|16728_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1793.85
//
Query:       MMETSP1061-20121228|16745_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1153.17
//
Query:       MMETSP1061-20121228|16739_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.4   0.0      0.018   12.7   0.0    1.3  1  TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase
        1.9    5.2   6.5        2.8    4.7   4.5    1.1  1  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01221  rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0     9e-06     0.018     124     159 ..      89     124 ..      85     139 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9e-06
    TIGR01221 124 eaevlykvtdvyapeaergilWndpeigidWpleda 159
                  +ae+ly+ t++ + ++++ i W d +i++++p + +
  MMETSP1061-20121228|16739_1  89 VAEFLYQLTKMLTDDNNEIIEWVDGRIKVHYPERLE 124
                  79*****************************98765 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   4.5    0.0013       2.8     307     419 ..     260     375 ..     240     387 .. 0.71

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0013
    TIGR01622 307 laskfedsfdeseqsgldlnteereqldekldrddekgsgalaiagtdskavqmaklsrdglvaklipsrelqaslsetsvlkalaea..sfvpse..vnlaseclvLsNmFdpate 419
                  ++++++ s+++ +q gl+  t++ eql+++++   ++   ++  +  +  a+++a+  + ++   +++ ++  ++ ++t +l+a a++  s +p++   n+ +   + +N+F++at+
  MMETSP1061-20121228|16739_1 260 MQNQQRPSLQDLQQLGLKSTTPSIEQLQAQIASLTKQQNEGGVNNAFNAAALNLASGGAASAAMGFSQFQQ-TTENPATAALNAAANPapSAMPATaaMNINAASGQSNNLFESATN 375
                  34556666************************987777755555666777788877666665554554333.455777777777765411556666667778888899999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2351.36
//
Query:       MMETSP1061-20121228|16754_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-07   28.7   0.0    0.00037   18.2   0.0    2.3  2  TIGR00372 cas4: CRISPR-associated protein Cas4
    8.4e-05   18.6   0.2    0.00034   16.6   0.1    1.8  1  TIGR02786 addB_alphas: double-strand break repair protein AddB
    0.00053   16.1   0.2     0.0031   13.6   0.0    2.0  2  TIGR03623 TIGR03623: probable DNA repair protein
    0.00094   15.4   0.1      0.003   13.8   0.0    1.6  1  TIGR02774 rexB_recomb: ATP-dependent nuclease subunit B
     0.0019   13.7   0.1     0.0047   12.4   0.0    1.5  2  TIGR02773 addB_Gpos: helicase-exonuclease AddAB, AddB subunit


Domain annotation for each model (and alignments):
>> TIGR00372  cas4: CRISPR-associated protein Cas4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00051      0.42       5      45 ..      95     136 ..      91     162 .. 0.81
   2 !   18.2   0.0   4.5e-07   0.00037      63     118 ..     251     319 ..     224     329 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00051
    TIGR00372   5 dvkeylyCprklwleklggseeeseesmeeGrliheeaek.f 45 
                      +  Cp+   +++l+++++++++ +++G++ h+ +e  f
  MMETSP1061-20121228|16754_1  95 SAMAFKECPQSFLFQYLYKIKQPTNKILAKGTMCHSALEHiF 136
                  5556667*****************************998752 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 4.5e-07
    TIGR00372  63 skklglkGviDvvleedg..elvpvEvksgkak..kre..........ahklQllayallleerygvevs 118
                  +k +g++ + D+v+e ++  +l ++++ksgka+  k            +  +Ql +yall++e+++++++
  MMETSP1061-20121228|16754_1 251 FKVRGIIDRLDIVKESPRsvALKVIDYKSGKAPhlK-YspamnqkifrEKFYQLKIYALLMREKTHASAN 319
                  567799999*******9999999*********8552.05777778998999*************987776 PP

>> TIGR02786  addB_alphas: double-strand break repair protein AddB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.1   4.1e-07   0.00034     789     952 ..     123     335 ..     109     382 .. 0.60

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.1e-07
    TIGR02786 789 erGtliHdilerfveevaerlaadaaealkki..........aakllee........lnlppeaealwlprlervadavlewerar...rleveeivaearakkelvaea...................gitLsgraDRidltedg....saeilDYKTgapPsek....qvr...allspQLaLeaalleegafkdigaetpaqlvyvrlkgkk 952
                  ++Gt+ H++le+    ++++ + ++++ + ++          ++ l+ee        +   +eae  w  ++ r+ ++  ++e  r   r + +++ + + a + ++  +                    ++ +g  DR+d+ ++      ++++DYK g++P  k      +      + QL + a+l++e      +++ + +l y +l+  +
  MMETSP1061-20121228|16754_1 123 AKGTMCHSALEHIFDLDPNDRTLENLQNMLRVewaenrleeeYRFLFEEavdsddagIRRDIEAEKEWGQSALRLLENYYQSEDPRtiqRPNPHKREVWVSADLAVD--SklgvtsasestpsaaaapeTFKVRGIIDRLDIVKESprsvALKVIDYKSGKAPHLKyspaMNQkifREKFYQLKIYALLMREKTHASANDRDSMDLRYLKLHFLD 335
                  56777777777777777666666666655443221111111122233331111111122345566667777777777777777665111223333333333333333..234666777778888888889***********997653323789*********9655222122200133457***********99999999999999999876544 PP

>> TIGR03623  TIGR03623: probable DNA repair protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.036        30     636     680 ..     122     166 ..     113     209 .. 0.77
   2 !   13.6   0.0   3.8e-06    0.0031     735     788 ..     251     316 ..     234     377 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.036
    TIGR03623 636 aerGtlvHevLelfWeriknqeaLkaldeaeleeliaeaveeala 680
                    +Gt+ H +Le +     n  +L++l+++ + e+ ++ +ee+ +
  MMETSP1061-20121228|16754_1 122 LAKGTMCHSALEHIFDLDPNDRTLENLQNMLRVEWAENRLEEEYR 166
                  579************988999999999998888887777776654 PP

  == domain 2    score: 13.6 bits;  conditional E-value: 3.8e-06
    TIGR03623 735 lelklriDRiDrlad....gsrliiDYKTga.asvk...dwage..rpeepQLplYall..aeeev 788
                   +++  iDR+D +++        +iDYK+g+ ++ k   +++++  r +  QL +Yall  +++++
  MMETSP1061-20121228|16754_1 251 FKVRGIIDRLDIVKEsprsVALKVIDYKSGKaPHLKyspAMNQKifREKFYQLKIYALLmrEKTHA 316
                  344556******999655444559*******65565667677762244557******996644444 PP

>> TIGR02774  rexB_recomb: ATP-dependent nuclease subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   3.6e-06     0.003     739     904 ..      85     281 ..      52     288 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.6e-06
    TIGR02774 739 edqplklsasalttfynnqykyflkyvlglee.eesihPdarshGtylhrvferllkdkgeesfdekleqainktsqeevfkalyeedaearyskeilldiarst...apilrensaiqvikeeea............................levkdnfqleldnqreikvrGkidridrlsdg...dslGvvdykssa 904
                    +p +ls s+   f +   +++++y+ ++++ +++i     +  + l ++f+   +d++ e++++ l+    +   ee+++ l+ee  ++     i  di        + lr  ++    +   +                             ++ +       +  + kvrG+idr+d ++++    +l v+dyks++
  MMETSP1061-20121228|16754_1  85 IPHPKHLSPSSAMAFKECPQSFLFQYLYKIKQpTNKILAKGTMCHSALEHIFDLDPNDRTLENLQNMLRVEWAENRLEEEYRFLFEEAVDSDD-AGIRRDIEAEKewgQSALRLLENYYQSE---DprtiqrpnphkrevwvsadlavdsklgvTSASESTPSAAAAPETFKVRGIIDRLDIVKESprsVALKVIDYKSGK 281
                  446778888888889888888999999888653566666655555667778888888888999999999999999999999999988776653.3455555332201022233222222111...1222455666888899999988888855322223333334447899***********9986322589*******86 PP

>> TIGR02773  addB_Gpos: helicase-exonuclease AddAB, AddB subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.1      0.14   1.2e+02     789     850 ..      96     153 ..      90     175 .. 0.73
   2 !   12.4   0.0   5.7e-06    0.0047     928     961 ..     247     281 ..     228     291 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.14
    TIGR02773 789 lEkyaaCpfkhfaqygLklkeRkiykleapDlGelfHealkeisdelkeeeldwkdltkekc 850
                     +++Cp ++  qy  k+k+ +   l     G++ H+al++i d l+ ++ + ++l++   
  MMETSP1061-20121228|16754_1  96 AMAFKECPQSFLFQYLYKIKQPTNKILA---KGTMCHSALEHIFD-LDPNDRTLENLQNMLR 153
                  5578999999999999999987764444...49999999999976.7777888888877554 PP

  == domain 2    score: 12.4 bits;  conditional E-value: 5.7e-06
    TIGR02773 928 ngeelklrGriDRvDkaekede.tylriiDYKsss 961
                  + e++k+rG iDR+D ++++ + + l++iDYKs+ 
  MMETSP1061-20121228|16754_1 247 APETFKVRGIIDRLDIVKESPRsVALKVIDYKSGK 281
                  56789**********9877765167********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.38
# Mc/sec: 1448.41
//
Query:       MMETSP1061-20121228|16781_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 1818.97
//
Query:       MMETSP1061-20121228|16793_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   15.6   1.0      0.011   13.0   0.0    2.0  2  TIGR01597 PYST-B: Plasmodium yoelii subtelomeric family PYST-B


Domain annotation for each model (and alignments):
>> TIGR01597  PYST-B: Plasmodium yoelii subtelomeric family PYST-B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.7e-06     0.011     134     231 ..      80     173 ..      69     184 .. 0.66
   2 ?    0.8   0.1     0.014        59      42     105 ..     460     520 ..     443     525 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.7e-06
    TIGR01597 134 ndeleiqpihdkiiikkdennsvseeedlkqleneknsvee.ehkefdlasednlkikrklkklvkklivrlvvlillvlsllvsGlvylllviisvli 231
                   ++ +i+ i d +i++k +n+s s   +  + +ne n +++ e k++d  ++d + i r      ++   + + +i+++   l+ G+v l++v  ++ +
  MMETSP1061-20121228|16793_1  80 GNQTNIEYIGDIKIVRKTQNQSRSTSAKRGNNRNEINLSQSyEEKKVDDYTVDRSCIPR-----WIRDAPTWLKMIIVASIALILGAVVLIVVGAKLTM 173
                  57789********************9999999999997765355566666666655444.....44444444444444444444455555555555555 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.014
    TIGR01597  42 frnnriladadnqfdlne.fyqstlslanqfnddndddkeiaylrni.idsyikkhkerntlldln 105
                  + +  +la ad   ++n+ f+q   sl     ++n d++ i   rn+ +d + k+    n + +l+
  MMETSP1061-20121228|16793_1 460 YTTMVVLAHADPTIEINDyFFQGFYSLV----ETNGDKRVIFVHRNLgVDNW-KREHGYNEISNLD 520
                  5556789**********95678888986....56766666666677634444.4444455566655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 2193.35
//
Query:       MMETSP1061-20121228|16826_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 2228.59
//
Query:       MMETSP1061-20121228|16832_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.44
# Mc/sec: 1895.84
//
Query:       MMETSP1061-20121228|16848_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1214.30
//
Query:       MMETSP1061-20121228|16871_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 692.94
//
Query:       MMETSP1061-20121228|16925_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|16944_1  [L=560]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (560 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2548.76
//
Query:       MMETSP1061-20121228|16954_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028    9.9   4.2       0.04    9.3   2.9    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   2.9   9.8e-06      0.04     959    1029 ..      38     111 ..       6     119 .. 0.59

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 9.8e-06
    TIGR00927  959 kedekGvdgeggsdGGdseeeeeee..eeeeeeeeeeeeeeeeeeeneeplslewpe.trqkqaiylfllpivf 1029
                   + +e+  + e + + G+ eeeee    +  ++ee++e  +++   +++e ls e p  + +k  i l+ll iv+
  MMETSP1061-20121228|16954_1   38 EAEEELDETEIDPEIGEEEEEEEVCppDATNNEEDDEPFNDDGSTDDNESLSDESPYvCYRKSVIGLMLLTIVL 111 
                   2223322233334444444444332112344455555555555666999*******725789999*******96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 1932.32
//
Query:       MMETSP1061-20121228|16981_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       287  (0.0699659); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 510.74
//
Query:       MMETSP1061-20121228|16978_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1803.85
//
Query:       MMETSP1061-20121228|16990_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-57  191.5   0.0    1.9e-57  191.2   0.0    1.1  1  TIGR03646 YtoQ_fam: YtoQ family protein


Domain annotation for each model (and alignments):
>> TIGR03646  YtoQ_fam: YtoQ family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.2   0.0   4.6e-61   1.9e-57       1     143 [.      49     191 ..      49     192 .. 0.99

  Alignments for each domain:
  == domain 1    score: 191.2 bits;  conditional E-value: 4.6e-61
    TIGR03646   1 ltvylaGeihsdWreeikklakekeldikfsspvtdheasddiGeeilGkeeekllkdekaakinairtkvllekadvvivrfGekykqWnaaldagyaaalgkpliilrdeelqhplkevdakaqvvvetveqvlevlkyil 143
                  ++vyl+GeihsdWre i  +  ek+l++++s+p t he sdd+G  ilG +ee+   d+ +a++nairt++ll++advv+vrfGeky+qWnaa+dagyaaalgkp++++++   +h lkev+a++++v+++++qv+++l+y++
  MMETSP1061-20121228|16990_1  49 WKVYLSGEIHSDWREVIAGGLAEKQLPVVLSAPNTSHEDSDDCGAMILGMQEERPNWDHIGASMNAIRTQTLLKEADVVVVRFGEKYRQWNAAFDAGYAAALGKPIVTIHPPAISHMLKEVNAASKAVCSDPQQVVDTLAYVI 191
                  68*******************************************************************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.36
# Mc/sec: 806.60
//
Query:       MMETSP1061-20121228|16999_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 847.51
//
Query:       MMETSP1061-20121228|16996_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 729.41
//
Query:       MMETSP1061-20121228|17013_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 345.69
//
Query:       MMETSP1061-20121228|17020_1  [L=960]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-05   19.1  39.1    8.6e-05   18.3  27.1    1.3  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0001   18.0  35.3    0.00017   17.2  24.5    1.2  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        2.2    5.0  38.5       0.86    6.3  16.8    2.5  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3  27.1   6.3e-08   8.6e-05     221     516 ..     225     511 ..     220     521 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 6.3e-08
    TIGR02168 221 elrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevae.leeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallkn 516
                  e +e++ all +r  +l +e+e++++  +  +++l+ l +el++++ + e+ ++e  ++++++e+ +++  +l +ei   e++ +   ++       ++++ ++le+ +++      +++ l + +  ++e++++  ++++++e++l+  ++  +++ +ele++ ++++e + +q+as + ++ +l+++l q+++  +  +++  +++++++      + ++++l +l+  ++ l++e  +l+++lee + el+  +++  + +++++q +++ ++le+  ++ e+   +v++ +++
  MMETSP1061-20121228|17020_1 225 EGEEWSQALLGQRHSSLVDEREAYKQVCDGFSQQLQILHTELDQAQRQAENQQEELYRVRSQMEDTRRNALRLVSEIMSSENSGNNSTRQA------KKAYYTDLETIQAQDLGVLPAVQLLGDYTRVVEESCKDSGQKISNLEEKLASKQDVDTTKVKELEAQIQKMKEgALQQQASFQTQIDTLSQKLLQSKKACQDVQKDLASQRMEMT---MYQSSTKTKLGSLQSHKKILKKEVIELRKKLEESNSELDLYRHRESANKHKVEQERQKSKLLERYVDKIESQV-KVQQNMME 511
                  5678889999999999999999999999999999999999999999999999999999999999999999999999888877665544443......3555556666666666666666666666666666666666666666555555555555555555555555544245667777777777777777777776666666655555554...5566677777777777777888888888888888888888888888888888888888888888888888754.33333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2  24.5   1.2e-07   0.00017     223     507 ..     228     510 ..     221     522 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.2e-07
    TIGR02169 223 eleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaae.lreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseees 507
                  e  + ll ++  +l  ++e+ ++  +   ++l+ l+ e+++ +++ e+ +++l  +  ++e+   +  + v e + + ++  +++++a +++  +le ++++       ++ l    + +e++ ++  ++  +l+e+l++++++  ++++ele+  ++++e + +++++ +++++ l ++l ++k   +  ++ +k l +++ e+ +   + + k+  l+++++ l++e+ + ++kle+ + +l+ ++++ ++ k+++e+  ++ + ler ++++e q k+ ++  
  MMETSP1061-20121228|17020_1 228 EWSQALLGQRHSSLVDEREAYKQVCDGFSQQLQILHTELDQAQRQAENQQEELYRVRSQMEDTRRNALRLVSEIMSSENSGNNSTRQAKKAYYTDLETIQAQDLGVLPAVQLLGDYTRVVEESCKDSGQKISNLEEKLASKQDVDTTKVKELEAQIQKMKEgALQQQASFQTQIDTLSQKLLQSK---KACQDVQKDLASQRMEMTMYQSSTKTKLGSLQSHKKILKKEVIELRKKLEESNSELDLYRHRESANKHKVEQERQKSKLLERYVDKIESQVKVQQNMM 510
                  55566666677777777778888888888888888888888888888888888888888888444444444444455555566667777777778888888877777777777777777788888888888888888888888888888888765444444266777778888888888877777...55667777777777777777777778888888888888888888888888888888888887777777777777777777777777777776665544 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   6.5     0.012        16     126     266 ..     233     370 ..     219     376 .. 0.56
   2 ?    6.3  16.8   0.00063      0.86     112     244 ..     367     500 ..     351     518 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.012
    TIGR01843 126 lvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleeelskard 266
                  l+ + +s + ++++a+++  + + +q++ l +el+++q+q+++ +++l  + +++e++r  ++  lvs  e++++e++ ++  ++ +++  +  ++ +++d   + + +l  ++++ v+e+ +++ +++++lee+l++ +d
  MMETSP1061-20121228|17020_1 233 LLGQRHSSLVDEREAYKQVCDGFSQQLQILHTELDQAQRQAENQQEELYRVRSQMEDTRR-NALRLVS--EIMSSENSGNNSTRQAKKAYYTDLETIQAQDLGVLPAVQLLGDYTRVVEESCKDSGQKISNLEEKLASKQD 370
                  444445555555555666666666666666666666666666555555555555555554.2233333..45666666666555555554444444444444445556666677777777777777777777777776665 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00063
    TIGR01843 112 fpdillsae.davaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseele.alrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevs 244
                   ++++ + + +++++++++ ++   +++++++ q++ l +++ q+++  +++q++l++ r +++++++  +  l +L++ + + + e++el ++++e ++el+ ++ + ++ k+++++ ++k + l ++++ +++
  MMETSP1061-20121228|17020_1 367 SKQDVDTTKvKELEAQIQKMKEGALQQQASFQTQIDTLSQKLLQSKKACQDVQKDLASQRMEMTMYQSSTKtKLGSLQSHKKILKKEVIELRKKLEESNSELDLYRHRESANKHKVEQERQKSKLL-ERYVDKIE 500
                  333444434348899999999999999**************************************9987762679***************************999998888888888877765544.33444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (960 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       392  (0.0955631); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.44
# Mc/sec: 2879.76
//
Query:       MMETSP1061-20121228|17034_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 2548.12
//
Query:       MMETSP1061-20121228|17050_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1640.44
//
Query:       MMETSP1061-20121228|17051_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 2618.49
//
Query:       MMETSP1061-20121228|17053_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 3178.30
//
Query:       MMETSP1061-20121228|17056_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-11   42.2   0.0    3.9e-11   41.4   0.0    1.4  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   9.4e-15   3.9e-11      21     143 .]     158     299 ..     153     299 .. 0.80

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 9.4e-15
    TIGR01444  21 ae.grviafEPlpdllekleenvklnnlkn..vkllnaAvgdregeleftvsddatgnsslaads................elaees.eieVevvtlddlveeaglekvdllKiDvEGaEleVLrgl.aetleekvpaivlevh 143
                  ++ ++v+ f+P+p   +  + + k+   +    +++ + +g  +ge+e++++d +++ s + + +                 + + + +++++v+t++ +++e++ ++v+llK+DvEG E+  L+++  +   +kv++++le h
  MMETSP1061-20121228|17056_1 158 TKqCDVVGFDPSPISKQWWKNKGKEIRKEHprYDFVDVGAGGIDGEIELKEYD-WGQVSIIEFPErvidlkrcfnhggckyNFHK-QeSFTIPVRTMKTIMRERKHDRVHLLKLDVEGSEYAFLEKMiDDLSCRKVDQLILEWH 299
                  44489999999998877666665554444455999*****************7.7777777776678988888877666643334.2699*************************************88888899999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1927.04
//
Query:       MMETSP1061-20121228|17055_1  [L=801]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-117  391.5   0.4   3.1e-114  380.4   0.1    2.5  3  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    1.1e-47  160.2   0.1      3e-17   60.6   0.0    4.1  3  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.2e-46  156.4   0.2    8.4e-18   62.3   0.0    4.1  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    5.2e-44  148.6   0.3    9.2e-19   65.7   0.0    3.4  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    1.6e-43  146.7   0.2    7.4e-18   62.7   0.0    4.1  3  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    4.9e-40  135.3   0.0    4.2e-16   57.1   0.0    3.9  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.2e-39  133.1   0.4    4.5e-16   56.7   0.0    3.4  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    5.8e-39  131.8   0.1    1.5e-20   71.5   0.0    3.7  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    6.3e-39  131.8   1.4    2.9e-11   40.5   0.1    4.1  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.8e-37  126.2   0.4    8.1e-12   42.0   0.0    4.1  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.1e-36  124.5   0.1    1.5e-13   48.9   0.0    3.9  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.3e-36  123.8   0.2    7.8e-16   56.0   0.0    3.9  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      2e-35  120.1   0.0    2.3e-13   47.9   0.0    3.8  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.4e-35  119.9   0.0    3.5e-14   50.7   0.0    4.1  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.3e-34  116.8   0.1    1.9e-14   51.6   0.0    3.3  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.5e-33  113.0   0.2    4.5e-10   37.3   0.0    4.2  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    2.4e-32  110.1   0.0    2.5e-13   47.8   0.0    3.9  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    4.2e-32  109.2   0.2    4.3e-10   37.2   0.0    4.2  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    8.4e-32  108.6   0.1    4.5e-12   44.0   0.0    4.2  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.2e-31  107.2   1.1    1.5e-15   55.3   0.0    4.1  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    3.8e-31  106.0   0.1    1.9e-14   51.3   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
      5e-31  105.8   0.1    1.9e-17   61.4   0.0    3.8  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    5.6e-31  105.6   0.4    1.5e-13   48.7   0.0    3.8  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    4.3e-30  102.6   0.0    2.5e-09   34.0   0.0    4.1  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      7e-30  101.6   0.1      2e-08   30.7   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    2.7e-29  100.1   0.3    1.6e-12   45.2   0.0    4.3  3  TIGR01978 sufC: FeS assembly ATPase SufC
    6.1e-29   99.2   0.3    2.8e-13   47.6   0.0    4.2  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    8.2e-29   98.3   0.1    7.3e-16   55.6   0.0    3.6  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
      2e-28   97.3   0.5    6.5e-13   46.6   0.0    4.2  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.3e-27   93.9   0.0    1.4e-11   42.0   0.0    3.5  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
      3e-27   93.7   0.0    1.4e-10   39.0   0.0    3.6  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      4e-27   93.1   0.2    4.1e-11   40.4   0.0    3.6  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.4e-26   90.4   0.1    1.1e-12   45.5   0.0    3.5  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
      4e-26   89.9   0.1    4.4e-10   37.4   0.0    3.7  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    8.9e-26   88.4   0.1    3.2e-13   47.2   0.0    3.2  3  TIGR01288 nodI: nodulation ABC transporter NodI
    1.3e-25   87.6   0.0    6.4e-10   35.7   0.0    4.0  4  TIGR00958 3a01208: antigen peptide transporter 2
    1.8e-25   87.7   0.3      4e-10   37.5   0.0    3.8  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    2.5e-24   83.7   0.0    1.4e-08   31.7   0.0    3.4  3  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    7.4e-24   82.2   0.1    2.3e-16   57.6   0.0    4.0  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.2e-23   81.6   0.0    1.1e-08   32.5   0.0    4.4  3  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.3e-23   80.2   0.0    2.2e-09   34.0   0.0    3.6  3  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    5.1e-23   79.2   0.1    5.3e-06   23.0   0.0    4.1  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.4e-21   73.7   0.0    3.3e-06   23.7   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.6e-21   73.4   0.2    1.3e-11   42.0   0.0    3.3  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    4.1e-20   69.7   0.1    1.5e-07   28.2   0.0    3.2  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    7.9e-20   68.7   0.0    2.9e-06   23.9   0.0    4.0  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    1.1e-19   68.2   0.6      9e-06   22.2   0.0    4.3  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.3e-17   61.4   2.8    7.5e-08   29.2   0.0    4.2  4  TIGR00955 3a01204: pigment precursor permease
    2.5e-17   61.0   0.0     0.0016   15.8   0.0    4.3  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    6.1e-15   52.6   0.1    5.1e-06   23.2   0.0    3.8  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    3.7e-14   49.9   0.3    3.5e-06   23.6   0.0    4.0  4  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    4.9e-14   49.9   0.1    7.2e-08   29.6   0.0    3.7  3  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.8e-13   45.5   0.0    1.9e-07   26.2   0.0    2.3  3  TIGR01257 rim_protein: rim ABC transporter
    1.4e-11   40.4   0.1    4.4e-06   22.2   0.0    3.2  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    2.6e-11   39.6   0.7     0.0071   11.6   0.1    4.0  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.2e-09   34.2   0.5    9.8e-06   21.2   0.1    3.1  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
      8e-08   28.7   2.1     0.0066   12.5   0.0    4.0  4  TIGR00630 uvra: excinuclease ABC subunit A
     0.0014   16.5   2.9        1.7    6.4   0.0    3.4  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0036   15.0   0.1       0.19    9.4   0.0    2.6  2  TIGR00152 TIGR00152: dephospho-CoA kinase
  ------ inclusion threshold ------
      0.042   11.5   4.4        1.4    6.5   0.0    3.2  3  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   2.6e-06   0.00018     333     375 ..     119     161 ..      63     173 .. 0.73
   2 !  380.4   0.1  4.6e-116  3.1e-114      18     530 ..     121     679 ..     103     695 .. 0.84
   3 ?    0.3   0.5      0.65        44      92     166 ..     715     792 ..     683     795 .. 0.65

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.6e-06
    TIGR03719 333 gdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpd 375
                  g+   + d++f+l +g+   +iG nG+Gkst++k++ ++  + 
  MMETSP1061-20121228|17055_1 119 GETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNS 161
                  4455566777777777777777777777777777776655554 PP

  == domain 2    score: 380.4 bits;  conditional E-value: 4.6e-116
    TIGR03719  18 keilkdislsffpgakiGvlGlnGaGkstllkim...............aGvdkefeGealaaegikvGyleqePkldeektvrenveegvaei....kealdrfeeisa.klaee....dadfdklleeqaklqekidaadawdldskleiamdalrlpe.edakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykG....tvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrsspkarqakskarlaryeelaseesekkee..taeivippg..erlGdkvievenlskaf.........gdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdq...srdalddnktvweeisd...GldllklgkvevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeye 530
                     l+d+ ++   gak  ++G nG+Gkst+lki+               +  + +++G++++ +++++ ++eqeP l  + tv +++    + +    ++  +r++ + + +l  +      +fd+  +   k  +++d  ++wd+ +k e  +  l++ + +d+++++lsGGe++rvalc  l+e+Pd+llldePtn l    v+Wl   l++ +     t+++vthdr fl++v++ i+eldrG+ + + g ys++le ke+rl+ e+ + a+ k + k eleW+r++p+ar++k kar+ ++ +l+++++ + ++   + ++i++g  +r+G k + +++++ +f         ++++++dd++++  +g  + + G+nG+Gk+t+ kl+tg+ +p +Ge++iGetv l+  dq   + d++ +++tv e + d   G+d   +g++  ++r  + +f+f  +  q +++ lsGGer r+++  +l  + n l+ldeP+ d d++tl+ale+ l++f G+ +vishdr f d++a h++ fegd+ v+ f+G+ +ey 
  MMETSP1061-20121228|17055_1 121 TWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILhesylnsngfvssysSSTNYKYTGKVQVPKTVRISMVEQEPPLPADITVGDAILGITETTtsagSSSNNRMDVVRKyRLVSQqaesGSNFDA--DVFMKASAEMDYLGGWDVLTKAEEIATKLKIHHlQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSnpklTILMVTHDRAFLEQVCNQIVELDRGSLYEHPGSYSAYLEGKEERLAAEDAAIANAKSKYKVELEWMRRQPQARESKGKARIDAFYKLEKSTKPRPRDpnLDLVQISNGdtRRIGTKTVSMNGVTLTFrvknengeaEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVYDQlglKFDEIAEKQTVLEYVVDqiqGNDAKAMGETPNEARKLLKQFEFPRSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKGVLLVISHDRAFADKVADHLFVFEGDGVVKDFQGSLSEYG 679
                  45699****************************944444432222221123456789*************************99987533332200013344555544321223331100344443..3445667889********************986489************************************************8764333349**************************************************************************************8877765444114457788763369*******99998776444444433689*********************************************************4444689999******99755559**********************************************************************************************************************96 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.65
    TIGR03719  92 gvaeikealdrfeeisaklaeedadfdklleeqaklqekidaad...awdldskleiamdalrlpeedakveklsGGe 166
                  + a+ +e+ +   + ++++++ +  ++kl  + a++q +id ++   +w++  +l   ++a++   ed+++  l  Ge
  MMETSP1061-20121228|17055_1 715 DRAKRNEVRNFVRQTKKEMTNIERSLEKLKPKAASVQSEIDGTStdaGWTILAELTDKLNAINEEIEDKEMRWLELGE 792
                  333333333444566677788888889999999999999986532237888888888888888888888887777776 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0   3.9e-10   2.6e-08       9     121 ..     116     231 ..     107     246 .. 0.83
   2 !   60.6   0.0   4.3e-19     3e-17     119     215 ..     269     366 ..     261     374 .. 0.88
   3 !   59.0   0.0   1.3e-18   8.9e-17       8     216 ..     472     668 ..     465     675 .. 0.72

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 3.9e-10
    TIGR03873   9 vraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagad....lkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdra 121
                   + g+ + + dvd +   Ga ++l+G nG+Gkst+l++l      ++G v+  ++      ++  +  +++r+++veq+    ++++v d++ lG +   +  +++s++  +vv+++
  MMETSP1061-20121228|17055_1 116 HNGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYSSStnykYTGKVQVPKTVRISMVEQEPPLPADITVGDAI-LGITETTTSAGSSSNNRMDVVRKY 231
                  344667899*****************************************65444333446777788899********************96.899999998899998888888875 PP

  == domain 2    score: 60.6 bits;  conditional E-value: 4.3e-19
    TIGR03873 119 dralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdlnlaasvcdhvvvldgGrv 215
                  +++ ++ ++++l d++ls lsGGer+rv l  al  eP +llldePtn l ++    l  l+ ++  +++ t+++  hd ++  +vc+++v ld G +
  MMETSP1061-20121228|17055_1 269 EEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNsNPKLTILMVTHDRAFLEQVCNQIVELDRGSL 366
                  56778999*******************************************97655555666665437899***********************9975 PP

  == domain 3    score: 59.0 bits;  conditional E-value: 1.3e-18
    TIGR03873   8 svraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaev...plsvrdvvalGriPhrslfaadsdedaevvdralarvels.sladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvv 216
                    +a++r+++dd + ++ +G    l G nG Gk+t+ +ll+G l+p++Gev+++ + + ++  +   +   ++e+++  e    +++  d+ a+G +P               ++++l + e   s  +  +s lsGGer+r ++   l+ +P++l+ldeP    d+ +  +l + + +    +   +v  hd ++a +v+dh+ v++g  vv
  MMETSP1061-20121228|17055_1 472 NGEAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVYDQLGLKFDEIAEKQTVLEYvvdQIQGNDAKAMGETPNE-------------ARKLLKQFEFPrSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQF---KGVLLVISHDRAFADKVADHLFVFEGDGVV 668
                  557889*********************************************9988887777665433332333322221110012344455555555533.............45666666653123355689****************************9777665544444555554...44455667***************9987776 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   6.9e-10   4.7e-08       7      77 ..     123     193 ..     118     216 .. 0.87
   2 !   57.1   0.0   5.1e-18   3.5e-16      67     187 ..     228     348 ..     212     351 .. 0.84
   3 !   62.3   0.0   1.2e-19   8.4e-18       6     186 ..     479     648 ..     475     652 .. 0.80

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 6.9e-10
    TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdp 77 
                   l++++++++rg + al+G+nG+Gkst+l+ l  +    +G v    ++++y+  g +++ k+v + + + 
  MMETSP1061-20121228|17055_1 123 QLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYSSSTNYKYTGKVQVPKTVRISMVEQ 193
                  699*************************************************9999999999886544333 PP

  == domain 2    score: 57.1 bits;  conditional E-value: 5.1e-18
    TIGR01166  67 rkkvalvlqdpdd.qlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklree.Gktvvisthdv 187
                   +k  lv q+++    f adv+   +     lG+   +v ++ +e  ++++i++l+++  + lsgGe+krva+ +a++ +pdvllldePt  l  aG+e l+++l   + +   t+++ thd 
  MMETSP1061-20121228|17055_1 228 VRKYRLVSQQAESgSNFDADVFMKASAEMDYLGGW--DVLTKAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpKLTILMVTHDR 348
                  55666777777652568888888888888888876..4778899************************************************************9877766156999****95 PP

  == domain 3    score: 62.3 bits;  conditional E-value: 1.2e-19
    TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeel..dysrkgll.elrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                   +l++ n ++ +g++++l GanG Gk+t+ + l+G l P++G+v ++ + +   y++ gl  +   + ++vl    dq+             + +G +++e+++ +++       s ++er +++lsgGe++r+ i ++++++p++l+ldeP+ + d +  + l + l++++  G  +vis hd
  MMETSP1061-20121228|17055_1 479 IMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVlgVYDQLGLKfDEIAEKQTVLEYVVDQIQGN--------DAKAMGETPNEARKLLKQF--EFPRSRWQER-ISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK--GVLLVIS-HD 648
                  4799*****************************************9877763347777775244455566666666666544........4578999999998876653..4455666666.789*************************************9999999874..6666664.55 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.1e-05    0.0021       5      40 ..     120     155 ..     117     200 .. 0.92
   2 !   63.6   0.0   5.7e-20   3.9e-18      63     205 ..     226     369 ..     217     465 .. 0.88
   3 !   65.7   0.0   1.3e-20   9.2e-19       9     287 ..     481     751 ..     476     759 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.1e-05
    TIGR01188   5 efkAvdgvnlkveegevfglLGPnGAGKtttikmLt 40 
                  e+  +++v++++++g   +l+G nG GK+t +k+L 
  MMETSP1061-20121228|17055_1 120 ETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILH 155
                  667799****************************95 PP

  == domain 2    score: 63.6 bits;  conditional E-value: 5.7e-20
    TIGR01188  63 evRrsigvvpqkasvdedLtarenlellgelyglpkkeaeeraeellelvelkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltthyleeadkladrvaiidkGkiiae 205
                  +v r+  +v q+a   ++  a   ++  +e+  l  +    +aee+   +++ + +d+ + ++sgG r+r+ l a+l+++P+vl LDEPt  L     + + dl+++ +++ + til+ th+    +++++++  +d+G +  +
  MMETSP1061-20121228|17055_1 226 DVVRKYRLVSQQAESGSNFDADVFMKASAEMDYLGGWDVLTKAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpKLTILMVTHDRAFLEQVCNQIVELDRGSLYEH 369
                  56677889999999999999999***************************************************************************************99***************************98754 PP

  == domain 3    score: 65.7 bits;  conditional E-value: 1.3e-20
    TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgelyglpkke...aeeraeellelvelkeaa.dkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelk.kevsllaaelteslleleavevdsdkvklkveeadetvkeileavkrnkikissis 287
                  +d+ n +  +g+ + l G nG GKtt  k+Lt+ l+P++G++ + G  vv     v  ++g+ +++ +     t  e   ++ +++g   k+   + + a++ll+++e+   + ++++  +sgG rrrl++   l ++P+ l LDEP +  D  t  a+ +++e++k     +l+ +h+   adk+ad++ + + G  + +d  + L  + g+  ve+e+++i++    e ++  ++ ++++++ ++ + + ++v+  v+++++++++i +++++ k k +s++
  MMETSP1061-20121228|17055_1 481 LDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEI-GETVVL---GVYDQLGLKFDEIAEK--QTVLEY--VVDQIQGNDAKAmgeTPNEARKLLKQFEFPRSRwQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKG---VLLVISHDRAFADKVADHLFVFE-GDGVVKDFQGSLS-EYGSCLVELENQKIQDSVaGELAQSNSSSNSKQTSYKEDRAKRNEVRNFVRQTKKEMTNIERSLEKLKPKAASVQ 751
                  678888888999999***************************98.666664...6899999999987755..455664..4566666665541114567889*******88774789**********************************************99986...58899**************9986.6666678888897.899999999999998755144444444444444477888888888888888888888888877777666666554 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.9e-06   0.00013      17      54 ..     120     157 ..     107     173 .. 0.84
   2 !   62.7   0.0   1.1e-19   7.4e-18     120     220 ..     266     367 ..     261     368 .. 0.92
   3 !   57.4   0.0   4.5e-18   3.1e-16      16     216 ..     476     663 ..     464     668 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.9e-06
    TIGR02211  17 eievlkgvsleiekgelvaivGssGsGkstllhllggl 54 
                  e+  l++v++++++g  +a++G  G+Gkst+l +l   
  MMETSP1061-20121228|17055_1 120 ETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHES 157
                  456699****************************9765 PP

  == domain 2    score: 62.7 bits;  conditional E-value: 1.1e-19
    TIGR02211 120 erakellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkl.drvlelkdgkla 220
                  ++a+e+  k+++++  ++  s+lsGGer+rva+  alv++P+++l dePt  l  +  + + +ll++ n++ + ++l+vthd+ + +++ ++ +el  g+l+
  MMETSP1061-20121228|17055_1 266 TKAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVcNQIVELDRGSLY 367
                  5799999*****************************************************************************998862566788888876 PP

  == domain 3    score: 57.4 bits;  conditional E-value: 4.5e-18
    TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPllisk.kskkeakerakellekvgl.ekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkd 216
                  +e  +l++ +++  +g+ + + G+ G Gk+t+  ll+g  +pt+Gev++    +  +           +lG+  +f  +    t+le v+  +  ++ k + e+ ++a +ll+++++   r +++ s lsGGer+r  i   l  kP+ ++ deP  + d +t +++ + l+++    +  llv++hd+ +a+k+  +l + +
  MMETSP1061-20121228|17055_1 476 EERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVY---------DQLGL--KFDEIAEKQTVLEYVVDQIQGNDaKAMGETPNEARKLLKQFEFpRSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQF----KGVLLVISHDRAFADKVADHLFVFE 663
                  4456799****************************************99554443332.........45775..79999*********986655433145678999**********94579***************************************99988776666554....56799***********988776655 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.5e-08   1.1e-06      13      99 ..     119     206 ..     106     239 .. 0.77
   2 !   57.1   0.0   6.2e-18   4.2e-16     116     213 ..     266     364 ..     253     365 .. 0.93
   3 !   46.5   0.0   1.1e-14   7.4e-13      15     206 ..     478     658 ..     464     665 .. 0.85

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.5e-08
    TIGR02673  13 agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedva..rlrerelpllRrkigvvfqDfkllkdrtvlen 99 
                  ++++ L+dv++++++g  + l+G+ G+Gk+t+lk+l++    s+G v+   ++++     + ++p+   +i++v q+  l  d tv + 
  MMETSP1061-20121228|17055_1 119 GETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYSSSTNykYTGKVQVPKT-VRISMVEQEPPLPADITVGDA 206
                  67899*****************************************987766554103334455554.457788777777777777665 PP

  == domain 2    score: 57.1 bits;  conditional E-value: 6.2e-18
    TIGR02673 116 krveevlelvgledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkr.Gttvivathdeelvervkkrvlelekg 213
                  ++ ee+ +++ +++ +++  ++lsgGe++Rva+  a+v++P++ll DePt  l  +  e + dll++ n++  +t++++thd++++e+v ++++el++g
  MMETSP1061-20121228|17055_1 266 TKAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpKLTILMVTHDRAFLEQVCNQIVELDRG 364
                  5678999999*******************************************************988876268**********************998 PP

  == domain 3    score: 46.5 bits;  conditional E-value: 1.1e-14
    TIGR02673  15 veaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkke.eeiqkrveevlelvgle.dkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkr 206
                    +L+d +  + +g+ + l Ga G Gktt+ kll+g ++p++Geve+  + v  +          ++g+ f +  + +++tvle v   ++ + +k+  e+ ++ +++l++ ++   + ++  + lsgGe+ R  i   +  kP+ l+ DeP  + D ++ + + + l++++  G+ ++v +hd++++++v+ +
  MMETSP1061-20121228|17055_1 478 RIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVY--------DQLGLKFDE--IAEKQTVLEYVVDQIQGNDAKAmGETPNEARKLLKQFEFPrSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK--GV-LLVISHDRAFADKVADH 658
                  5579999****************************************887776654........578999985..789*******9887776655441577889999******96268899999******************************999999888888888775..54.56779***999998765 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.1   1.5e-10     1e-08     296     409 ..      81     199 ..      64     232 .. 0.77
   2 !   40.0   0.1   7.7e-13   5.3e-11     442     527 ..     273     359 ..     262     361 .. 0.81
   3 !   56.7   0.0   6.6e-18   4.5e-16     323     523 ..     467     655 ..     413     661 .. 0.73

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 1.5e-10
    TIGR02857 296 alvevldaeeqpeaekapltaaassslelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv....ngaelaeldadswrkqiawvpQkPllfe 409
                  +l++v+++    +++++++ +a++  l++e++s++ +g +   l++v+++++ g ++al+G  G GKst lk+l       +G ++      + + +   +     +i+ v Q+P l +
  MMETSP1061-20121228|17055_1  81 ELFAVTSTDGSSSSSSSSSSSASAPVLTVEGLSCTHNGGEtWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSysssTNYKYTGKVQVPKTVRISMVEQEPPLPA 199
                  67888886677777777777777789**********887779********************************998888888887644332222333333344556777777777755 PP

  == domain 2    score: 40.0 bits;  conditional E-value: 7.7e-13
    TIGR02857 442 kalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrlalaela.dkiv 527
                   +l+  ++   +++ ++LSgG+r+R+aL  al+++ ++lllDEPt  L  +  + + + l +     + t+l+v+H++a +e++ ++iv
  MMETSP1061-20121228|17055_1 273 TKLK--IHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNsnPKLTILMVTHDRAFLEQVcNQIV 359
                  4444..66666788899**********************************99999999988772245699*******99887415565 PP

  == domain 3    score: 56.7 bits;  conditional E-value: 6.6e-18
    TIGR02857 323 elenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaela 523
                  +++n +   e+r  +l++++ ++  g ++ l+Ga G+GK+t  kll g +epteG+++++++ +  +  d++  +   ++ k +++e  v + i+  +++a  +  +ea +  +  e+         ++  er + LSgG+r+Rl +  +l  + + l+lDEP    D +t  ++++ l+++    ++l+++H++a a ++
  MMETSP1061-20121228|17055_1 467 RVKNENGEAEERI-MLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVY-DQLGLKFDEIAEKQTVLEY-VVDQIQGNDAKAMGETPNEARKLLKQFEFP-------RSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK--GVLLVISHDRAFADKV 655
                  2333333333333.799******************************************999777666.4566666667776666654.556777777777777666666665554444.......455678889*********************************************954..578999***9988764 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0   2.2e-22   1.5e-20       3     211 ..     108     367 ..     106     385 .. 0.90
   2 !   50.1   0.0   7.7e-16   5.3e-14      13     176 ..     477     636 ..     466     647 .. 0.79

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 2.2e-22
    TIGR03864   3 eveglsfay..gkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeak.................................................egeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdevea.edrlvvlhkGkvl 211
                  +vegls ++  g+   l+dv++++++g+ +aL+G nG Gkst +++l   y ++                                                 + + + aG+  ++++++++++  +v qq     ++     ++  a++  l+  ++ ++ ee+ ++l++++ +++ + +L+GG+r+rv +  al+ eP++LLlDe+t  L ++  + l + + +   + +l++L  th    +e+  +++v l++G + 
  MMETSP1061-20121228|17055_1 108 TVEGLSCTHngGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSngfvssyssstnykytgkvqvpktvrismveqepplpaditvgdailgiTETTTSAGS-SSNNRMDVVRKYRLVSQQAESGSNFDADVFMKASAEMDYLGGWDVLTKAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQvCNQIVELDRGSLY 367
                  6666654432288899*******************************999888889***************************************99999885445555555.5678999**************99999999**************************************************************************************************777666514678889999876 PP

  == domain 2    score: 50.1 bits;  conditional E-value: 7.7e-16
    TIGR03864  13 krralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryha.aLhGl...sraeaeerieealarlgl.aeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevr 176
                  +r  ldd +++  +g+ + L G nG Gk+t  +llt+ +e +ege+++  +        +  +lG+ f + +     +v   l+y   +++G    +  e+ ++ +++l+++++ + r +e++  L+GG+rrr+ i   l  +P+ L+lDe++v  D+++ +al ++++
  MMETSP1061-20121228|17055_1 477 ERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGET----VVLGVYDQLGLKFDEIAEK--QTV---LEYVVdQIQGNdakAMGETPNEARKLLKQFEFpRSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLE 636
                  57789******************************************9543....3466788999999876643..233...33332123343100334566777889999998457899*************************************999888877665 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1   8.4e-12   5.7e-10     305     393 ..      77     166 ..      46     214 .. 0.76
   2 !   40.5   0.1   4.3e-13   2.9e-11     470     529 ..     286     347 ..     279     348 .. 0.85
   3 !   27.3   0.0   4.2e-09   2.9e-07     327     397 ..     456     527 ..     422     540 .. 0.84
   4 !   23.7   0.0   5.3e-08   3.6e-06     466     517 ..     587     638 ..     579     649 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 8.4e-12
    TIGR02868 305 eRieevldakvevaeasapaaeaaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevt 393
                  +R +e+ +  +  + +s+   + +++ +p l++++ls+ ++g+e+  l++v+++l+ G++ a++G+ G+GKst l++l      ++G v+
  MMETSP1061-20121228|17055_1  77 SRRTELFAVTSTDGSSSSSSSSSSSASAPVLTVEGLSCTHNGGETwQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVS 166
                  33334444343445555555555666799************************************************9887776777665 PP

  == domain 2    score: 40.5 bits;  conditional E-value: 4.3e-13
    TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthr 529
                  + lSGGer+R+al  aL+++ +vllLDEPt  L  +  e l + L   + + + t+++vth+
  MMETSP1061-20121228|17055_1 286 SNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTdkNSNPKLTILMVTHD 347
                  579******************************99888777777775444556779*****7 PP

  == domain 3    score: 27.3 bits;  conditional E-value: 4.2e-09
    TIGR02868 327 aaasekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgv 397
                  +++ + +tl++r  + + + +e+  l++ + d  +G r+ + Ga G+GK+t  +ll+g l+p +Gev + ++
  MMETSP1061-20121228|17055_1 456 TVSMNGVTLTFRVKNENGEAEERiMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGET 527
                  45556777777766666666666799*****************************************98775 PP

  == domain 4    score: 23.7 bits;  conditional E-value: 5.3e-08
    TIGR02868 466 geggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaa 517
                  +e+ + lSGGer+Rl +  +L  + + l+LDEP+++ D +t ++l + L + 
  MMETSP1061-20121228|17055_1 587 QERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQF 638
                  677789***********************************99987777543 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0     4e-10   2.8e-08     466     525 ..     107     166 ..      64     197 .. 0.83
   2 !   42.0   0.0   1.2e-13   8.1e-12     602     679 ..     286     366 ..     270     374 .. 0.90
   3 !   25.7   0.0     1e-08   6.8e-07     478     528 ..     476     526 ..     449     536 .. 0.86
   4 !   22.8   0.0   7.7e-08   5.3e-06     599     682 ..     588     670 ..     584     674 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 4e-10
    TIGR03375 466 ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvl 525
                  + ++ +s ++++ e+  L++v ++++ G k a+iGr+G+GKst lk+l + y  ++G v+
  MMETSP1061-20121228|17055_1 107 LTVEGLSCTHNGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVS 166
                  577889999********************************************9999875 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 1.2e-13
    TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtHrtslLe.lvdriivldkGri 679
                  ++LSgG r+ val  al+++p++llLDEPt+ l  +  e l + L +  +  + T+++vtH  ++Le ++++i+ ld+G +
  MMETSP1061-20121228|17055_1 286 SNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSnpKLTILMVTHDRAFLEqVCNQIVELDRGSL 366
                  58*******************************************987776689**********99725688888999976 PP

  == domain 3    score: 25.7 bits;  conditional E-value: 1e-08
    TIGR03375 478 eekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldg 528
                  ee+  L++ + +   G+++ + G +G GK+t +kll+g +epteG+v + +
  MMETSP1061-20121228|17055_1 476 EERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGE 526
                  4566799999999**********************************9976 PP

  == domain 4    score: 22.8 bits;  conditional E-value: 7.7e-08
    TIGR03375 599 erGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslL.elvdriivldkGrivad 682
                  er + LSgG r+ + +  +l  +p+ l+LDEP+   D  + + l + L+++     l++++H  ++  +++d++ v++   +v d
  MMETSP1061-20121228|17055_1 588 ERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK--GVLLVISHDRAFAdKVADHLFVFEGDGVVKD 670
                  77788***********************************999999999984..578899998777725779*****99988876 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.3   0.0   4.3e-09   2.9e-07       3     101 ..     108     207 ..     106     238 .. 0.79
   2 !   48.9   0.0   2.2e-15   1.5e-13     122     216 .]     271     366 ..     260     366 .. 0.88
   3 !   41.7   0.0   3.2e-13   2.2e-11      12     206 ..     474     657 ..     463     665 .. 0.81

  Alignments for each domain:
  == domain 1    score: 28.3 bits;  conditional E-value: 4.3e-09
    TIGR00960   3 kfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgq.dltklr.drevpflrrqiGivfqdfkllsdrtvydnv 101
                  ++e +s +++g+++  l +v +++++G  + l+G  G+Gkst+lk++ +    s+G +         k+  + +vp+   +i +v q+  l  d tv d +
  MMETSP1061-20121228|17055_1 108 TVEGLSCTHNGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYSSsTNYKYTgKVQVPKTV-RISMVEQEPPLPADITVGDAI 207
                  6677889999**********************************************99754330333444145777765.489999998888888887765 PP

  == domain 2    score: 48.9 bits;  conditional E-value: 2.2e-15
    TIGR00960 122 alekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnra.GttvlvathdenlveskrkrvltlskGkl 216
                     k+ +++ + +   +lsgGe++rva+  a+v++P +ll dePt  l  +  + + +ll + n    +t+l+ thd+ ++e+  +++++l++G l
  MMETSP1061-20121228|17055_1 271 IATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpKLTILMVTHDRAFLEQVCNQIVELDRGSL 366
                  55566666777777889*******************************************988876268*************************87 PP

  == domain 3    score: 41.7 bits;  conditional E-value: 3.2e-13
    TIGR00960  12 kgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiGvkgrei...eervsaalekvGl.kdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrk 206
                  ++ ++  ld+ +++  +G+ + l+G  G Gk+t+ kl++g  +p++G++ + +  +          +  q+G+ f +  + +++tv++ v+   +i G  ++++   ++ +++ l++  + + + ++    lsgGe++r++i   +  kP+ l+ deP+ + d ++   + + le+++  G+ +lv +hd+ + ++   
  MMETSP1061-20121228|17055_1 474 EAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVL--------GVYDQLGLKFDE--IAEKQTVLEYVVD--QIQGNDAKAMgetPNEARKLLKQFEFpRSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK--GV-LLVISHDRAFADKVAD 657
                  5667889******************************************99766554........455689999975..7899*****9986..5667766655111566777888888735667777889******************************99999888888888886..44.5677899988777655 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0     1e-06     7e-05      14      61 ..     124     171 ..     114     241 .. 0.67
   2 !   56.0   0.0   1.1e-17   7.8e-16     113     206 .]     266     361 ..     260     361 .. 0.90
   3 !   42.6   0.0   1.4e-13   9.6e-12       7     201 ..     474     656 ..     468     661 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 1e-06
    TIGR03608  14 lkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegke 61 
                  l+++++++++G   a++G+ G+GKst+L il      ++g v    ++
  MMETSP1061-20121228|17055_1 124 LRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYSSS 171
                  899****************************98877777776544444 PP

  == domain 2    score: 56.0 bits;  conditional E-value: 1.1e-17
    TIGR03608 113 kkkkevlekvglekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegk.tiiivtHdpeva.ekadrviel 206
                  +k +e+  k+++++ +++ + +lsgGe++Rval  +l+ e++++l DEPt  L     e + +ll++ +++ k ti++vtHd +   + +++++el
  MMETSP1061-20121228|17055_1 266 TKAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKlTILMVTHDRAFLeQVCNQIVEL 361
                  56788999***********************************************************9988774899*****98651568888876 PP

  == domain 3    score: 42.6 bits;  conditional E-value: 1.4e-13
    TIGR03608   7 kfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkkks.kkekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekad 201
                  + +++ +l++++ ++ +G+ + + G  G GK+t+  +l+   ++ +g+v + ++             + ++lg  F + a  e++tv e +   ++ +  +   e+ ++  ++l+++++ +++ +++i  lsgGe+ R+ +  +l  +++ ++ DEP    D ++ +++ ++l++ k    +++++ Hd + a+k+ 
  MMETSP1061-20121228|17055_1 474 EAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETV---------VLGVYDQLGLKFDEIA--EKQTVLEYVVDQIQGNDAKaMGETPNEARKLLKQFEFpRSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK---GVLLVISHDRAFADKVA 656
                  678899******************************9977777778***998887.........3345689999999865..9****999988888776551558899999********999999***********************************99999888888887775...4788899**99988764 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   6.1e-08   4.2e-06      11      60 ..     119     168 ..     107     224 .. 0.82
   2 !   42.7   0.0   1.3e-13   9.2e-12     123     212 ..     279     368 ..     268     382 .. 0.93
   3 !   47.9   0.0   3.4e-15   2.3e-13      12     213 ..     477     670 ..     466     680 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 6.1e-08
    TIGR03410  11 gesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeiele 60 
                  ge+  lrdv++++++g  +a++Grng+Gk+t+lk l   + +++G ++  
  MMETSP1061-20121228|17055_1 119 GETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSY 168
                  67778*******************************99999999987654 PP

  == domain 2    score: 42.7 bits;  conditional E-value: 1.3e-13
    TIGR03410 123 emlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevva 212
                  ++++    +LsGG ++ +a+  aLv eP +llLDePt+ +  + ++ +++ +++ +++ +l+il+v +   f  ++ ++++ l+rG++ +
  MMETSP1061-20121228|17055_1 279 HLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSLYE 368
                  566667789*****************************************************************************9875 PP

  == domain 3    score: 47.9 bits;  conditional E-value: 3.4e-15
    TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk....ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvae 213
                  e  +l d + +  +g+ +++ G ngvGktt+ k l+g l+ ++Ge+e+ ++ +  +      + G+ +     ei  k tv e +   ++  ++k    + +   ++++ F   ++  + r   LsGG +  l i  +L  +P++l+LDeP+       ++ +e+ +++ +      +l++ +   fa ++ad+++v+e   vv++
  MMETSP1061-20121228|17055_1 477 ERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVYD----QLGLKFD----EIAEKQTVLEYVVDQIQGNDAKamgeTPNEARKLLKQFEFPRSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKG----VLLVISHDRAFADKVADHLFVFEGDGVVKD 670
                  5567899999999***********************************9988877654....4688774....5555555555554444433333211144555678888888899999999******************************99998888888887776654....4666778899***********998777765 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   6.9e-10   4.7e-08       2      87 ..     107     194 ..     106     216 .. 0.80
   2 !   50.7   0.0   5.1e-16   3.5e-14     125     224 ..     267     366 ..     260     375 .. 0.95
   3 !   31.7   0.0   3.1e-10   2.1e-08      14     217 ..     477     660 ..     466     677 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 6.9e-10
    TIGR02315   2 levenlskvypngkq.alknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklr.kkigmifqe 87 
                  l ve ls+++++g++  l++v++++++G   a+iG+ G+Gkst+l+ + +   +s+g +  + ++ +     +++  +  +i+m+ qe
  MMETSP1061-20121228|17055_1 107 LTVEGLSCTHNGGETwQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYSSSTNYKYTGKVQVPKtVRISMVEQE 194
                  899******99876538*******************************9999999998887776665544444444331467777776 PP

  == domain 2    score: 50.7 bits;  conditional E-value: 5.1e-16
    TIGR02315 125 kAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkagei 224
                  kA e+ +++ +++l+++  ++LsGG+++Rva++ al+++p+++l DEP+  L  +  + + dll + n + ++t+++  H+  + ++ +++iv l  g++
  MMETSP1061-20121228|17055_1 267 KAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSL 366
                  7888999****************************************************************************************99986 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 3.1e-10
    TIGR02315  14 gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglae.laakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadriv 217
                  ++ +l++ n ++ +G+ + + G  G Gk+t+ + + +  e+++g++++ ++ v          +  ++g+ f e  + e++tvle v+    g              e  ++A +lL+++++     ++r + LsGG++ R+ i   l  +p+ ++ DEP    D  + + + ++l +    kg+  ++  H+  +a k ad++ 
  MMETSP1061-20121228|17055_1 477 ERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVL--------GVYDQLGLKFDE--IAEKQTVLEYVVDQIQGNDAKA-------MGETPNEARKLLKQFEFPRsRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQ---FKGVLLVI-SHDRAFADKVADHLF 660
                  566899****************************************99887776........567889999987..5699*******98766655433.......457778999*******97615688*******************************887776665555554443...34444444.366666666666665 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.6e-05    0.0011      10      47 ..     118     155 ..     110     206 .. 0.91
   2 !   51.6   0.0   2.8e-16   1.9e-14     109     209 ..     266     366 ..     261     378 .. 0.93
   3 !   44.7   0.0   3.4e-14   2.4e-12      14     206 ..     479     664 ..     467     677 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.6e-05
    TIGR00968  10 fGdfqalddvdlevktGslvallGpsGsGkstllrvia 47 
                   G++  l dvd++++ G   al+G  G+Gkst+l+++ 
  MMETSP1061-20121228|17055_1 118 GGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILH 155
                  588899*****************************985 PP

  == domain 2    score: 51.6 bits;  conditional E-value: 2.8e-16
    TIGR00968 109 akveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGki 209
                   k ee+   +++++l+d+  s+lsGG+r+rval  al  ep+vllldep   l     + l   l     + k+t ++vthd++   +v ++iv l++G +
  MMETSP1061-20121228|17055_1 266 TKAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSL 366
                  57788889999******************************************9999999**************************************986 PP

  == domain 3    score: 44.7 bits;  conditional E-value: 3.4e-14
    TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdka...kikakveellelvql..eklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlek 206
                    ldd +++  +G+ ++l G  G Gk+t+ ++++G  +p++G++ +  + v  v     ++G+ f++ a  ++ tv + +   +  + +d++   ++ +   +ll+  ++  ++ ++r  s lsGG+r+r+ +   l+v+p+ l+ldep    d      l ++l +++  +    ++++hd++ a +vad++ v+e 
  MMETSP1061-20121228|17055_1 479 IMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGV---YDQLGLKFDEIA--EKQTVLEYVVDQI--QGNDAKamgETPNEARKLLKQFEFprSRWQER-ISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKGVL----LVISHDRAFADKVADHLFVFEG 664
                  579******************************************976655444...4579*****988..5679999998654..54444400144455566666655521334444.4789******************************************9887655....5689************999874 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.1e-05    0.0021      26      57 ..     123     154 ..     110     182 .. 0.89
   2 !   37.3   0.0   6.6e-12   4.5e-10      83     232 ..     224     369 ..     218     380 .. 0.91
   3 !   21.5   0.0   4.2e-07   2.9e-05       4      69 ..     458     523 ..     455     532 .. 0.93
   4 !   33.6   0.0     9e-11   6.1e-09     125     233 ..     567     671 ..     541     706 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.1e-05
    TIGR02769  26 vldnvslsleeGetvallGrsGaGkstlarll 57 
                   l +v+++l++G   al+Gr G+Gkst+ ++l
  MMETSP1061-20121228|17055_1 123 QLRDVDFNLQRGAKAALIGRNGTGKSTFLKIL 154
                  589*************************9998 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 6.6e-12
    TIGR02769  83 rkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqivee 232
                  r  + r+ +lv q + s  n    v    +  +  l   d   + + ia  l++ +l+++ l    ++lsGG  +r+++  al  eP +++lde    l l     + +ll++ + +  l++l++thd    ++++++++ ld+G + e+
  MMETSP1061-20121228|17055_1 224 RMDVVRKYRLVSQQAESGSNFDADVFMKASAEMDYLGGWDVLTKAEEIATKLKIHHLQDQSL----SNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSLYEH 369
                  55677889999999999999999999999999999999999999999999999999998877....579********************************9999999*************************************99886 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 4.2e-07
    TIGR02769   4 evsdvshtyrtggllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevs 69 
                  ++++v+ t+r +  +g+ + + +ld+ +    +G  + l G  G Gk+t+++ll G  +P++Gev 
  MMETSP1061-20121228|17055_1 458 SMNGVTLTFRVKNENGEAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVE 523
                  678899999999999999999*******************************************97 PP

  == domain 4    score: 33.6 bits;  conditional E-value: 9e-11
    TIGR02769 125 erkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveei 233
                  e  + + +ll++ e++ +  + + + lsGG  +r+ i   l+v+P++++lde   + dl      l+ l+   ++f    l+i+hd   ++k+a+++ v+++  +v + 
  MMETSP1061-20121228|17055_1 567 ETPNEARKLLKQFEFPRSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDL----DTLSALESYLEQFKGVLLVISHDRAFADKVADHLFVFEGDGVVKDF 671
                  44556779********************************************8766665....3466666666666667899*******************99888876 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   5.8e-06    0.0004      12      49 ..     119     156 ..     106     216 .. 0.80
   2 !   47.8   0.0   3.7e-15   2.5e-13     138     233 ..     281     378 ..     264     386 .. 0.86
   3 !   39.2   0.0   1.6e-12   1.1e-10      11     227 ..     475     681 ..     465     698 .. 0.82

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 5.8e-06
    TIGR00972  12 gekealkdvnleikknkvtaliGpsGcGkstllrslnr 49 
                  ge   l+dv++++++ + +aliG  G+Gkst+l+ l  
  MMETSP1061-20121228|17055_1 119 GETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHE 156
                  456689****************************9864 PP

  == domain 2    score: 47.8 bits;  conditional E-value: 3.7e-15
    TIGR00972 138 lkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthnmqqaarvsdktaffleGelveegeteqifek 233
                   ++s  +LsGG ++r+++  al  eP+vlLlDePt  L    +e + +l+++ +++  +ti++vth+ ++ ++v ++++ + +G+l e+  + + + +
  MMETSP1061-20121228|17055_1 281 QDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpkLTILMVTHDRAFLEQVCNQIVELDRGSLYEHPGSYSAYLE 378
                  3456678*******************************************99887666******************************9766665555 PP

  == domain 3    score: 39.2 bits;  conditional E-value: 1.6e-12
    TIGR00972  11 ygekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaff........leGelveeget 227
                    e+  l+d n ++ + + ++l G  G Gk+t+ + l    +      +eG+v + ++ +         +  ++G+ f +    ++++++ v+  ++ ++ k   e  + +++ Lk+  +    +++ ++    LsGG ++rl i   l+v+P+ l+lDeP+   D  + + +e+ +++ k    ++++ h+ ++a +v+d+  +f        ++G+l e+g+ 
  MMETSP1061-20121228|17055_1 475 AEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEP-----TEGEVEIGETVVL-------GVYDQLGLKFDEIAE-KQTVLEYVVDQIQGNDAKAMGETPNEARKLLKQFEFP---RSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKGV--LLVISHDRAFADKVADHLFVFegdgvvkdFQGSLSEYGSC 681
                  5667788999999999999999999999999999987643333.....4677766554443.......446678999999876.68999****9999999999999999999999998888...99*****************************************************9985..67789************99997777777777777777764 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   7.8e-09   5.3e-07      16      67 ..     116     167 ..     110     185 .. 0.89
   2 !   36.2   0.0   1.3e-11   9.1e-10     127     221 ..     266     360 ..     247     363 .. 0.91
   3 !   37.2   0.0   6.3e-12   4.3e-10       4     220 ..     459     660 ..     456     663 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 7.8e-09
    TIGR02324  16 qgGvklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilv 67 
                  ++G +   l++v+++++ G   al+G+ G+Gkst+lk l+ +Yl ++g + +
  MMETSP1061-20121228|17055_1 116 HNGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSS 167
                  567777889*************************************998765 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 1.3e-11
    TIGR02324 127 akakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakar.gaaligifhdeevrelvadrele 221
                  +ka+e+ ++l+i  +L   + +  sGGe++Rv +  al+ +  +LLLdePt  L  a  +   +l++++ ++   +++ + hd++  e+v+++ +e
  MMETSP1061-20121228|17055_1 266 TKAEEIATKLKI-HHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpKLTILMVTHDRAFLEQVCNQIVE 360
                  6899999*****.999999*********************999***********************9887653789*********99999998776 PP

  == domain 3    score: 37.2 bits;  conditional E-value: 6.3e-12
    TIGR02324   4 vedlsktfilhqqgGv..klpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGv.ereearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadrel 220
                  +++++ tf + +++G   ++ +l++ +++  +G+ ++l+G+ G Gk t+ k l ++  p  g++ +   ge+v         vl v   ++g   +f  +  + + le v + ++ + + +  e+ ++a++ll++++ p   W+   +  sGGe++R+ i   l ++   L+LdeP    d  +  +    +++ k     l+ i hd++  ++vad+ +
  MMETSP1061-20121228|17055_1 459 MNGVTLTFRVKNENGEaeERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEI---GETV---------VLGVY-DQLGL--KFDEIAEKQTVLEYVVDQIQGNDAkAMGETPNEARKLLKQFEFPRSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK---GVLLVISHDRAFADKVADHLF 660
                  56677788888888862245678999**********************************999976...5566.........55555.56664..57788888999998888888766514568899**********************************99999777899****99998888876666666655...457779999999999888765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.7e-06   0.00032       2      59 ..     106     165 ..     105     207 .. 0.84
   2 !   39.8   0.0   1.2e-12   8.5e-11     123     221 ..     267     367 ..     248     374 .. 0.91
   3 !   44.0   0.0   6.6e-14   4.5e-12      18     218 ..     481     665 ..     474     679 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.7e-06
    TIGR03411   2 iLevedvsvsfdgfka..lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsv 59 
                  +L+ve++s + +g +   l+d+++++++g   ++iG nG Gk+t+l ++      ++G v
  MMETSP1061-20121228|17055_1 106 VLTVEGLSCTHNGGETwqLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFV 165
                  68899999998886643389**************************99977666666655 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 1.2e-12
    TIGR03411 123 rieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelak..ersvvvvehDmefvrelaekvtvlheGkvl 221
                  + ee+++ +++++ +d+  ++Ls G+++++ +   lv+ep++lllDeP+  ++ +  e  a+ll++ ++  + ++++v hD  f++++ +++  l +G++ 
  MMETSP1061-20121228|17055_1 267 KAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSnpKLTILMVTHDRAFLEQVCNQIVELDRGSLY 367
                  66889999999999**************************************************8655412789*******************9*999875 PP

  == domain 3    score: 44.0 bits;  conditional E-value: 6.6e-14
    TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLe.ekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheG 218
                  l+d++++  +g+  ++ G+nG Gktt+  ++tG  +p+eG+v + ++ ++++ ++      +g kf   ++ e++tvle +   ++ +         ++  e+ ++ +++l++ +   ++ +++ ++Ls G++ +L+i  +l  +p++l+lDeP      +  +   + l++ ++  +++v+ hD  f +++a+++ v++  
  MMETSP1061-20121228|17055_1 481 LDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVYDQ------LGLKFD--EIAEKQTVLEYVVDQIQGND--A-----KAMGETPNEARKLLKQFEFPrSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKG--VLLVISHDRAFADKVADHLFVFEGD 665
                  67888889999999********************************999887664......678997..599*****987644333332..2.....33355566666777777775156688899****************************988777777777777776654..789**************99998654 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.017       1.1       2      42 ..     130     170 ..     129     187 .. 0.77
   2 !   55.3   0.0   2.2e-17   1.5e-15      97     188 ..     271     363 ..     206     369 .. 0.91
   3 !   39.6   0.1   1.4e-12   9.6e-11       5     191 ..     490     667 ..     486     678 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.017
    TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagk 42 
                  ++++G   +l+G nG+Gk+t+l+ +     +++G v   + 
  MMETSP1061-20121228|17055_1 130 NLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYSS 170
                  67899999**************9988777777777766554 PP

  == domain 2    score: 55.3 bits;  conditional E-value: 2.2e-17
    TIGR03771  97 alervklteladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeel.agegtailmtthdlaeavatcdrvvllng 188
                     + k+ +l+d+++ +lsGG+r+rv +  al  +p +llldep   l l   e l++l+++  ++ + +ilm+thd a   ++c+++v l++
  MMETSP1061-20121228|17055_1 271 IATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKnSNPKLTILMVTHDRAFLEQVCNQIVELDR 363
                  4467899*****************************************************987155678******************998765 PP

  == domain 3    score: 39.6 bits;  conditional E-value: 1.4e-12
    TIGR03771   5 kGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragli.Gllrrpkkadfaavadalervkltela.drpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvv 191
                  +G+ ++l G nG Gktt+ + + g +++++G+v+++        + +G v  +  + +d  i  +qtvl+    +i G   ++  +     ++ l++ ++ + + +  +  lsGG+r+r+ +   l+vkp+ l+ldep    dl +   l   +e++      +l+ +hd a a +++d + +++g  v
  MMETSP1061-20121228|17055_1 490 NGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGET------VVLG-VYDQLGLKFD-EIAEKQTVLEYVVDQIqGNDAKAMGETPNEARKLLKQFEFPRSRwQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK---GVLLVISHDRAFADKVADHLFVFEGDGV 667
                  6999*******************************995......3444.4444556667.588899999999888746667777777788899999999987653667***********************************999888887777664...5789999*************99998744 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.7e-05    0.0025      14      57 ..     122     165 ..     111     186 .. 0.80
   2 !   51.3   0.0   2.8e-16   1.9e-14     140     242 ..     281     383 ..     264     391 .. 0.91
   3 !   11.9   0.0    0.0003      0.02      11      62 ..     476     526 ..     466     538 .. 0.83
   4 !   22.6   0.0   1.7e-07   1.1e-05     142     223 ..     588     665 ..     532     674 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.7e-05
    TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsi 57 
                    l ++++++++G k+aliG  G+Gkst l+il      ++G++
  MMETSP1061-20121228|17055_1 122 WQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFV 165
                  5688899*************************987666666665 PP

  == domain 2    score: 51.3 bits;  conditional E-value: 2.8e-16
    TIGR03005 140 adalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrkpkeer 242
                  +d+  ++lsGG+++rva+  al  +p vll+de+t  l    ve + ++l +  s+ +lt+l+vth+  f ++++++++ +d+G + e+      + + keer
  MMETSP1061-20121228|17055_1 281 QDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSLYEHPGSYSAYLEGKEER 383
                  5666789*********************************************************************************988888888999998 PP

  == domain 3    score: 11.9 bits;  conditional E-value: 0.0003
    TIGR03005  11 geltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvege 62 
                  +e  +ld+++ +  +G+++ l+G  G Gk+t  ++l    +  eG++++ ge
  MMETSP1061-20121228|17055_1 476 EERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEI-GE 526
                  555689****************************998655557888888.54 PP

  == domain 4    score: 22.6 bits;  conditional E-value: 1.7e-07
    TIGR03005 142 alpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkG 223
                  +  + lsGG+++r+ i   l+++p+ l++de++   d +l  + l+ l    ++ +  +l+++h+  fa ++ad +  f+  
  MMETSP1061-20121228|17055_1 588 ERISVLSGGERRRLQILSVLSVKPNFLILDEPSV--DCDL--DTLSALESYLEQFKGVLLVISHDRAFADKVADHLFVFEGD 665
                  55678**************************975..5555..679999999999999******************9998754 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.0     0.031       2.1       7      52 ..     112     155 ..     106     197 .. 0.81
   2 !   61.4   0.0   2.7e-19   1.9e-17      72     219 ..     219     366 ..     199     367 .. 0.87
   3 !   33.5   0.0   9.9e-11   6.8e-09      14     212 ..     473     660 ..     466     668 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.031
    TIGR02982   7 lnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltlig 52 
                  l+  ++ ge+    l d++++++ g    l G  G+Gk t+l ++ 
  MMETSP1061-20121228|17055_1 112 LSCTHNGGET--WQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILH 155
                  5555555544..3489**************************9875 PP

  == domain 2    score: 61.4 bits;  conditional E-value: 2.7e-19
    TIGR02982  72 asekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavgleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.vadrivkmedGkl 219
                   s +++++v rk  ++ q+ +  + + a   ++ ++e+   l   +  +kaee+ +++ +++  d+  ++lsgG ++rva+  alv++P+++l dePt  l     + + +ll+++  +   til+vthd   l+ v+++iv++++G+l
  MMETSP1061-20121228|17055_1 219 SSSNNRMDVVRKYRLVSQQAESGSNFDADVFMKASAEMDY-LGGWDVLTKAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEqVCNQIVELDRGSL 366
                  5566677777777777777777777777777777777654.57788999*********************************************************************************9988549**********87 PP

  == domain 3    score: 33.5 bits;  conditional E-value: 9.9e-11
    TIGR02982  14 gelr.kqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakaeelleavglee.rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild.vadriv 212
                  ge++ + +l d n +  +g+ + l+G+ G Gktt+  l++g  +  eGe+++ ++ + g        v  ++G+ f +  + e  t+ + v   ++ +++ ++ e+ ++a++ll++  +   r + + + lsgG ++r+ i   l  +P++++ deP    d ++  ++ + l+    +    +l++ hd    d vad + 
  MMETSP1061-20121228|17055_1 473 GEAEeRIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLG--------VYDQLGLKFDE--IAEKQTVLEYVVDQIQGNDAKAMGETPNEARKLLKQFEFPRsRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLE----QFKGVLLVISHDRAFADkVADHLF 660
                  444404468899*****************************99*******987666655........55678888875..67788888999888899999899999***********9964399*********************************99888776555444443....334456777888776654677665 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.1e-06   0.00014       2      58 ..     108     166 ..     107     181 .. 0.79
   2 !   32.9   0.1   1.5e-10     1e-08     108     188 ..     268     349 ..     257     361 .. 0.85
   3 !   48.7   0.0   2.2e-15   1.5e-13      10     181 ..     475     643 ..     467     657 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.1e-06
    TIGR01189   2 eaeelaveR..gervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGeve 58 
                  ++e l+++   ge+  l++++f+l+ G   ++ G+nG+GK+t L+il      ++G v+
  MMETSP1061-20121228|17055_1 108 TVEGLSCTHngGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVS 166
                  667777765115677899****************************9876666666665 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1.5e-10
    TIGR01189 108 veealekvgLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGi.vllathqdl 188
                  +ee  +k+ +++l+d  +++Ls G ++R+al   l+++  + +LDEPt  l  +gve la+ll++  ++  + +l+ th   
  MMETSP1061-20121228|17055_1 268 AEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLtILMVTHDRA 349
                  56677889999****************************************************9988776551566777654 PP

  == domain 3    score: 48.7 bits;  conditional E-value: 2.2e-15
    TIGR01189  10 RgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfy.aallqseqktveealekvgL.sgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivl 181
                   +er +l + ++++  G+ + + G nG+GKtt  ++l+G l+p++Geve+ ++ +  + d+l  ++  ++ ++++ + +   + ++   a+ ++++ +++ + l++ +  +   +  ++ Ls G +rRl +  +l  k    iLDEP +  D ++ + l++ l++     G+ l
  MMETSP1061-20121228|17055_1 475 AEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVYDQLGLKFDEIAEKQTVLEYVV--DQIQGNdAKAMGETPNEARKLLKQFEFpRSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQF---KGVLL 643
                  57899999*******************************************99999999999888888888888776543..3444331444556777999*******9345678999*****************************************9999875...34555 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   2.1e-08   1.5e-06     316     375 ..     106     165 ..      97     173 .. 0.94
   2 !   34.0   0.0   3.6e-11   2.5e-09     453     532 ..     286     367 ..     280     373 .. 0.88
   3 !   16.1   0.0   9.9e-06   0.00068     329     378 ..     476     525 ..     456     538 .. 0.86
   4 !   21.9   0.0   1.8e-07   1.2e-05     453     534 ..     591     671 ..     584     677 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 2.1e-08
    TIGR01842 316 elevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsv 375
                   l+ve +s+++ ++++  l++++f+l+ G+  a+iG  g+Gks+  ++l  ++l+++G v
  MMETSP1061-20121228|17055_1 106 VLTVEGLSCTHNGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFV 165
                  689**********************************************99999999977 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 3.6e-11
    TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkar.kitvvvithrpsllelv.dkilvlkdGalk 532
                  ++LsgG r+R+aL  al  +P +++LDeP   L  +G   la+ l++   + k t++++th  + le+v ++i+ l+ G+l 
  MMETSP1061-20121228|17055_1 286 SNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpKLTILMVTHDRAFLEQVcNQIVELDRGSLY 367
                  68*******************************************987654389999****888887654899999999875 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 9.9e-06
    TIGR01842 329 ekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlD 378
                  e++ +l + ++   +G+ + + G+ g Gk++ ++ll+G  +p++G+v++ 
  MMETSP1061-20121228|17055_1 476 EERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIG 525
                  455789999**************************************985 PP

  == domain 4    score: 21.9 bits;  conditional E-value: 1.8e-07
    TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvith.rpsllelvdkilvlk.dGalkaf 534
                  + LsgG r R+ +   l  +P +++LDeP  + D +   al + l++ k    + +vi+h r+ + +++d+++v++ dG +k+f
  MMETSP1061-20121228|17055_1 591 SVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK---GVLLVISHdRAFADKVADHLFVFEgDGVVKDF 671
                  679*********************************99****9999876...45666666266677889999999757888877 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   5.2e-07   3.5e-05     477     561 ..     106     194 ..      58     207 .. 0.77
   2 !   30.7   0.0     3e-10     2e-08     611     691 ..     283     368 ..     267     382 .. 0.82
   3 !   25.2   0.0   1.4e-08   9.7e-07     490     538 ..     476     524 ..     443     532 .. 0.90
   4 !   20.3   0.0   4.3e-07   2.9e-05     611     690 ..     588     668 ..     576     677 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 5.2e-07
    TIGR03796 477 kvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDg.kpreeiprevl...anslalvdqd 561
                   +++++++ +++  e+  ++d++++l+ G++ Al+G  G+Gkst  k++   y +++G +   +  +  +++ +v    +  +++v+q+
  MMETSP1061-20121228|17055_1 106 VLTVEGLSCTHNGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYSsSTNYKYTGKVQvpkTVRISMVEQE 194
                  55677778888888888999*************************************99975440333344433321113446777776 PP

  == domain 2    score: 30.7 bits;  conditional E-value: 3e-10
    TIGR03796 611 egganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRg....ctciivaHRLstiRd.cdeiivlerGkvve 691
                  ++ +nlsGG+r+R+ +  aLv++P +L+lDE t  L  +  + + + l  ++     t+++v+H  + + + c++i+ l+rG + e
  MMETSP1061-20121228|17055_1 283 QSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNsnpkLTILMVTHDRAFLEQvCNQIVELDRGSLYE 368
                  4558********************************9887777777776665233379******777765449*********9876 PP

  == domain 3    score: 25.2 bits;  conditional E-value: 1.4e-08
    TIGR03796 490 leapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilf 538
                   e+ +++df+ +  +G r+ l G+ G Gk t +kl++G  ep++Ge+ +
  MMETSP1061-20121228|17055_1 476 EERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEI 524
                  567899****************************************976 PP

  == domain 4    score: 20.3 bits;  conditional E-value: 4.3e-07
    TIGR03796 611 egganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaH.RLstiRdcdeiivlerGkvv 690
                  e  + lsGG+r Rl+i   L  +P  LilDE     D  t  a+++ l +     ++++H R  + + +d++ v+e   vv
  MMETSP1061-20121228|17055_1 588 ERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKGVLLVISHdRAFADKVADHLFVFEGDGVV 668
                  556779*******************************************98888888888466666777888887765555 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   2.4e-06   0.00016      15      48 ..     123     156 ..     107     172 .. 0.84
   2 !   26.4   0.0   1.3e-08     9e-07     142     216 ..     285     360 ..     248     373 .. 0.82
   3 !   45.2   0.0   2.3e-14   1.6e-12       4     226 ..     469     670 ..     466     678 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 2.4e-06
    TIGR01978  15 iLkglnlevkkGevhaimGpnGsGkstLskvlag 48 
                   L++++ ++++G+  a++G+nG+Gkst  k+l  
  MMETSP1061-20121228|17055_1 123 QLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHE 156
                  599***************************9954 PP

  == domain 2    score: 26.4 bits;  conditional E-value: 1.3e-08
    TIGR01978 142 neGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyerllelikPdvvh 216
                   +  sGGe+kr  ++  ++ eP++ +LDe    l + ++  +a+ + + +++ + ++l++th + +le++  + v 
  MMETSP1061-20121228|17055_1 285 LSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpKLTILMVTHDRAFLEQVCNQIVE 360
                  3468*****************************************9887776699************999877665 PP

  == domain 3    score: 45.2 bits;  conditional E-value: 2.3e-14
    TIGR01978   4 kdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivks 226
                  k+   + e++ +L+++n +  +G+   + G+nG Gk t +k l+g+   e t+Ge+++ ++ +l +      + Gl   f    ei+  ++++ l  ++++++   g+++  + e  ++ ++ l+++e++++  +  +    sGGe++r +il ++ ++P++ iLDe     D+D+l ++ + +++++     ll+i+h + + ++++ d+++v+    +vk+
  MMETSP1061-20121228|17055_1 469 KNENGEAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGE--LEPTEGEVEIGETVVLGVYD----QLGL--KF---DEIA--EKQTVLEYVVDQIQ---GNDAKAMGETPNEARKLLKQFEFPRSRWQERIS-VLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK---GVLLVISHDRAFADKVA-DHLFVFEGDGVVKD 670
                  55566789999*********************************97..56799999999888766543....3444..33...3444..45667777777777...555446777788899999999999976666665.49***********************************99888888776...57999999999999986.78888877777765 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7   0.0     0.012      0.79      15      46 ..     126     157 ..     113     228 .. 0.73
   2 !   47.6   0.0   4.2e-15   2.8e-13     111     210 ..     267     366 ..     257     393 .. 0.93
   3 !   11.5   0.0   0.00039     0.027      23      61 ..     491     529 ..     473     553 .. 0.87
   4 !   28.1   0.0   3.7e-09   2.5e-07     129     212 ..     590     670 ..     584     735 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.012
    TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGL 46 
                  dvd++l+    +al Gr G+Gk+++++++   
  MMETSP1061-20121228|17055_1 126 DVDFNLQRGAKAALIGRNGTGKSTFLKILHES 157
                  799999988899***************98655 PP

  == domain 2    score: 47.6 bits;  conditional E-value: 4.2e-15
    TIGR02142 111 seekvielLgiehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrv 210
                  + e++   L i+hL +   ++LsGGe++Rva+  Al+ +P++Ll+DeP   L     + +   L   +++ k+ il+v H+   ++++ +++v l+ G +
  MMETSP1061-20121228|17055_1 267 KAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSL 366
                  56899999****************************************************************************************9987 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00039
    TIGR02142  23 kgvtalFGrsGsGktslirliaGLtrpdegeivldgevl 61 
                   +++ l G+ G Gkt++ +l++G + p+ege+++ ++v+
  MMETSP1061-20121228|17055_1 491 GDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVV 529
                  4788999***************************98876 PP

  == domain 4    score: 28.1 bits;  conditional E-value: 3.7e-09
    TIGR02142 129 pgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvle.dGrvka 212
                   + LsGGe+ R  i   l  +P+ L++DeP    D    + +  yLe+    +k  +l +sH+     ++ad++ v+e dG vk 
  MMETSP1061-20121228|17055_1 590 ISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQ----FKGVLLVISHDRAFADKVADHLFVFEgDGVVKD 670
                  5679**************************999998887777777776....5556799*****************985677764 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.0   1.1e-17   7.3e-16      12     250 ..     120     369 ..     107     389 .. 0.75
   2 !   36.3   0.0   7.6e-12   5.2e-10     301     503 ..     482     664 ..     478     691 .. 0.79

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 1.1e-17
    TIGR03269  12 glevlknisleleeGevlGilGksGaGksvllhllrGldeyeptsGkii.yhvalc.ekcgyverpskvG...........ekcpkcgeklekeevdf.wdlsdklkkrlkkriaimlqrtfalyeedtvlenvlealeeigyeak.eavkravelleevklehrithiardlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeivee 250
                  ++  l++++++l+ G    ++G+ G+Gks +l++l+  ++y +++G +  y  ++  +  g v++p++v             + ++ +  l  +e       s + + ++ ++  ++ q+  a  + +   +  ++a  e++y +  + +++a e+  + k++h       +lsGGe++rv l   l+ ep +ll dept  l     + + + l++   + ++++++ +h    +e+++++ + l+ G++ e 
  MMETSP1061-20121228|17055_1 120 ETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILH--ESYLNSNGFVSsYSSSTNyKYTGKVQVPKTVRismveqepplpADITVGDAILGITETTTsAGSSSNNRMDVVRKYRLVSQQ--AESGSNFDADVFMKASAEMDYLGGwDVLTKAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSLYEH 369
                  44569******************************7..6777888777424433321334556666544311110000000333333333333333320233356666677777766665..445666667889*********8643899***************************************************************************************************98765 PP

  == domain 2    score: 36.3 bits;  conditional E-value: 7.6e-12
    TIGR03269 301 dnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewvdmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdelakr..kavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrd 503
                  d+ +++  +++   l G  G Gktt +k+l G lept+Geve  +G+  v     g      +   +Gl + e a   ++tvle + + i  +  + +++    a   lk+  f   + +e      + ls Ger r+ +  vl  +p+ +ildep+   d  t  +++ s l   e+++   +++shd  f  +v d   +   
  MMETSP1061-20121228|17055_1 482 DDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVE--IGETVVL----G------VYDQLGLKFDEIA--EKQTVLEYVVDQIQGNDAKAMGETpnEARKLLKQFEFPRSRWQE----RISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALE-SYL---EQFKGVLLVISHDRAFADKVADHLFVFEG 664
                  777788888888999************************975..7987663....3......3445788887754..67788888888887777777765422678899999998777665....45789***************************999987776554.443...5678899***************8766655 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.8e-06   0.00046      17      95 ..     127     210 ..     119     231 .. 0.74
   2 !   46.6   0.0   9.6e-15   6.5e-13     108     206 ..     267     365 ..     264     369 .. 0.93
   3 !   18.6   0.0   3.6e-06   0.00024      16      62 ..     483     529 ..     471     535 .. 0.88
   4 !    9.1   0.0    0.0028      0.19     128     206 ..     592     667 ..     584     673 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 6.8e-06
    TIGR01277  17 fdlsveaGervailGesGaGkstllnli.......aGflepasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGl 95 
                   d+++++G + a++G  G+Gkst+l+++        Gf+   s + + +   ++ + p    +sm+ qe  l a +tv + i lG+
  MMETSP1061-20121228|17055_1 127 VDFNLQRGAKAALIGRNGTGKSTFLKILhesylnsNGFVSSYSSSTNYKYTGKV-QVPKTVRISMVEQEPPLPADITVGDAI-LGI 210
                  577899*******************99822222223555555555444444444.45777779***************9887.666 PP

  == domain 2    score: 46.6 bits;  conditional E-value: 9.6e-15
    TIGR01277 108 kvedvarqvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGk 206
                  k e++a+++ i ++ ++   +lsGG+r+rval   lv+e  +llldep   l  +  e +  l++   ++ klt+l+vth+   + ++ +q+v ++ G 
  MMETSP1061-20121228|17055_1 267 KAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGS 365
                  6789**********************************************9998877777779999***************************999886 PP

  == domain 3    score: 18.6 bits;  conditional E-value: 3.6e-06
    TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdh 62 
                   f+    +G+r+ + G  G Gk+t+ +l++G lep++Ge+ + +  +
  MMETSP1061-20121228|17055_1 483 DFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVV 529
                  5889999*********************************9987655 PP

  == domain 4    score: 9.1 bits;  conditional E-value: 0.0028
    TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvve.dGk 206
                   lsGG+r+r+ +   l  +   l+ldep    d  l  + l+ ++   ++ k  ll+++h+   a ++a++  v e dG 
  MMETSP1061-20121228|17055_1 592 VLSGGERRRLQILSVLSVKPNFLILDEPSV--DCDL--DTLSALESYLEQFKGVLLVISHDRAFADKVADHLFVFEgDGV 667
                  59*********9999887778999****65..5555..56777888888999999999**99999999998877652454 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00047     0.032      15      52 ..     119     156 ..     103     175 .. 0.82
   2 !   42.0   0.0   2.1e-13   1.4e-11     116     214 ..     269     367 ..     261     388 .. 0.87
   3 !   36.6   0.0   9.3e-12   6.4e-10       7     211 ..     468     665 ..     463     790 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00047
    TIGR03265  15 eaftalkdislsvkkgelvclLGPsGCGkttLLriiaG 52 
                  +++ +l+d+++++++g   +l+G  G Gk+t+L+i+  
  MMETSP1061-20121228|17055_1 119 GETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHE 156
                  57889*****************************9865 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 2.1e-13
    TIGR03265 116 eelLelvglsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkie 214
                  ee+   + +++ +++  + lsGG ++rvaL  al+  P++LLLDeP   L     e L   l +   + ++t +mvthd+    +++++iv +++g++ 
  MMETSP1061-20121228|17055_1 269 EEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSLY 367
                  4555555666667777899********************************9999*************************9999999999999998765 PP

  == domain 3    score: 36.6 bits;  conditional E-value: 9.3e-12
    TIGR03265   7 ieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLknkklkr.eevaerveelLelvglsgse.ekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkg 211
                  +++ + e e+  +l+d +++  +g+ +cl G  G Gktt+ ++++G  ++++G++ +g+  +  +     + G+ f   a     tv e +   ++++  k   e+ +  ++lL+  +++ s+ +   + lsGG ++r+ +   l ++P++L+LDeP    D      L + l++++  l    +++ hd+  a  +aD++ v +  
  MMETSP1061-20121228|17055_1 468 VKNENGEAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVY---DQLGLKFDEIA--EKQTVLEYVVDQIQGNDAKAmGETPNEARKLLKQFEFPRSRwQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKGVL----LVISHDRAFADKVADHLFVFEGD 665
                  6666777788899********************************************997776554...568*****988..68899999988888776654157889999********99873567799***************************99999998888888888776554....6789************9998853 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   6.4e-06   0.00044      11      57 ..     117     163 ..     107     203 .. 0.80
   2 !   39.0   0.0     2e-12   1.4e-10      97     211 ..     251     367 ..     244     462 .. 0.77
   3 !   32.6   0.0   1.7e-10   1.2e-08      15     272 ..     478     726 ..     464     746 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 6.4e-06
    TIGR03522  11 lygkqkaldevsfeaekGeivGflGPnGaGkstlmkilt.gylkadsG 57 
                    g+   l +v f+ ++G    ++G nG+Gkst +kil  +yl+++ G
  MMETSP1061-20121228|17055_1 117 NGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHeSYLNSN-G 163
                  4567778999***************************962566544.4 PP

  == domain 2    score: 39.0 bits;  conditional E-value: 2e-12
    TIGR03522  97 efsaalyklkgrklkkrveelielvGlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevi..keiakdktvilsthimqevealcdrviiinkGkiv 211
                  + sa++  l g  +  + ee+  +  +++ q + +++ls G r+rv l +al+ +P+vl+ldePt  l    +  + +++  k+   + t+++ th    +e +c++++ +++G + 
  MMETSP1061-20121228|17055_1 251 KASAEMDYLGGWDVLTKAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLtdKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSLY 367
                  55566666666666778888899999999999************************************9999999999883344555679************************875 PP

  == domain 3    score: 32.6 bits;  conditional E-value: 1.7e-10
    TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqh.kkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvil.sthimqevealcdrviiinkGkivadkkleelkaaekkkvievefeeeidlqllekleevsevkklkgntykltveteedvrkei 272
                  +  ld+  ++  +G+ + + G nG Gk+t  k+ltg l+++ G v++ ++ vl    +   +   + e   + +  yv + ++  ++  k  g+   ++ ++l+++  + + ++  +i+ ls G r+r  +   l  +P+ lildeP+   d + l ++   +++    k v+l  +h     + + d++ + + G  v+++   +l++      +    +++i+ ++  +l + ++  + k+++yk   +++++vr+ +
  MMETSP1061-20121228|17055_1 478 RIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVYDQLGLKFDEIAEKQTVLE--YVVDQIQ--GNDAKAMGE-TPNEARKLLKQFEFPRSRWqERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQ---FKGVLLvISHDRAFADKVADHLFVFE-GDGVVKDFQGSLSEYG--SCLVELENQKIQDSVAGELAQSNSSSNSKQTSYKEDRAKRNEVRNFV 726
                  5679999999*************************************999999877777766777777665543..5555444..333333333.3456788999999977765268********************************9999888777665554...45555413455555666666666555.4444444445563332..22222235567777777777777777777777777777777777655 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0    0.0003      0.02       4      87 ..     119     202 ..     116     231 .. 0.72
   2 !   36.3   0.0   1.1e-11   7.3e-10     109     207 ..     267     365 ..     256     368 .. 0.91
   3 !   40.4   0.0   5.9e-13   4.1e-11       9     209 ..     481     668 ..     474     673 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.0003
    TIGR01186   4 GlklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGki..lidGediaeisdaelrevrrkkiamviqkialfPhmt 87 
                  G +  ++dvd++++ G    +iG  G+Gkst +++l      ++G +  +    +     ++++   +  +i+mv q+  l    t
  MMETSP1061-20121228|17055_1 119 GETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVssYSSSTNYKYTGKVQV--PKTVRISMVEQEPPLPADIT 202
                  7778899****************************98877777776622233333333333333..44555666666655555555 PP

  == domain 2    score: 36.3 bits;  conditional E-value: 1.1e-11
    TIGR01186 109 kalealklvdleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGe 207
                  ka e   ++ +++ +d+   +lsGG ++rv l  al  ePd+ll+de+   l     + l d l + +++ + ti+++thd     +++++iv l  G 
  MMETSP1061-20121228|17055_1 267 KAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGS 365
                  777888888899999999********************************999999999**********************888888888888877775 PP

  == domain 3    score: 40.4 bits;  conditional E-value: 5.9e-13
    TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideq...erkekalealklvdleeye.dryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeiv 209
                  ++d +++  +G+ i++ G  G Gk+t  +ll   +ePt+G++ i Ge+++    ++l        ++ + +ia    +t+l+ +    ++++ d++   e  + a+++lk+ +++  + ++    lsGG ++r+ ++  l+++P+ l++de+    d  + + l   l    ++ +  ++ i+hd   a +++d + +++   +v
  MMETSP1061-20121228|17055_1 481 LDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEI-GETVVLGVYDQL--------GLKFDEIA--EKQTVLEYVVD--QIQGNDAKamgETPNEARKLLKQFEFPRSRwQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYL----EQFKGVLLVISHDRAFADKVADHLFVFEGDGVV 668
                  678899999**********************************9.666666666677........77788877..57888887644..44444443112667789999****9954431445678***************************8877765555555444....4566778999************99888765555 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   0.0     0.006      0.41      11      54 ..     109     154 ..      99     204 .. 0.82
   2 !   45.5   0.0   1.6e-14   1.1e-12     117     247 ..     269     396 ..     264     428 .. 0.82
   3 !   33.0   0.0   9.8e-11   6.7e-09      19     215 ..     476     664 ..     458     676 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.006
    TIGR03258  11 leslrvayga.rv.vlddlsleieaGellallGksGsGkttllrav 54 
                  +e l+ ++++ ++  l d+ ++++ G   al+G+ G+Gk+t l+++
  MMETSP1061-20121228|17055_1 109 VEGLSCTHNGgETwQLRDVDFNLQRGAKAALIGRNGTGKSTFLKIL 154
                  56666655431332589999***********************986 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 1.6e-14
    TIGR03258 117 ervadalklvqlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslial.GetralydapadrfvaeylGaanlls 247
                  e +a  lk+  l d +    ++lsGG ++rval  alv +pdvllldep   l      +   +l + ++  p+lt+l+vthdr     + ++i  +  Gsl ++ G   a  +   +r++ae    an  s
  MMETSP1061-20121228|17055_1 269 EEIATKLKIHHLQDQSL---SNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGV-EWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSLYEHpGSYSAYLEGKEERLAAEDAAIANAKS 396
                  66777788888877664...68****************************99986544.4556666778899*************9999*************999445555557778889998877777655 PP

  == domain 3    score: 33.0 bits;  conditional E-value: 9.8e-11
    TIGR03258  19 garvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlr...arkqskaliaervadalklvqlsdaa.arlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmke 215
                  + r++ldd+  +   G+ + l G  G Gktt  ++++G +++  G + ++++ +  +  y  +l+l + + a   + +v e v   ++   a+ + ++   +   + lk  ++     ++  + lsGG ++r+ +   l v+p+ l+ldep    d +  +++ + l++++       +l+++hdr  a  +ad++ ++  
  MMETSP1061-20121228|17055_1 476 EERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGV--Y-DQLGLKFDEIAE--KQTVLEYVVDQIQgndAKAMGETP--NEARKLLKQFEFPRSRwQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKG-----VLLVISHDRAFADKVADHLFVFEG 664
                  56899**********************************************988654..4.57*****99885..667777776655400044444433..333455666666443313344679**************************877776666666655555443.....467889***999999999887753 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.1e-05    0.0021      14      53 ..     122     161 ..     107     244 .. 0.82
   2 !   32.0   0.0   2.9e-10     2e-08     105     202 ..     268     366 ..     261     379 .. 0.88
   3 !   37.4   0.0   6.5e-12   4.4e-10      11     198 ..     476     663 ..     466     677 .. 0.77

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.1e-05
    TIGR03740  14 avvnnvslkvkknsvygllGpnGaGkstllklltGllrkt 53 
                    + +v++++++ +  +l+G nG+Gkst lk+l     ++
  MMETSP1061-20121228|17055_1 122 WQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNS 161
                  5678999*************************97555444 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 2.9e-10
    TIGR03740 105 ieevlkivdlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpek.GitvilsshilsevelladhiGiiseGkl 202
                   ee+ +++++++ + +  +++s G ++r+ +  al+++P++l+ldePtn l   G++ l +l++  +++  +t+++ +h  + +e+++++i  +  G l
  MMETSP1061-20121228|17055_1 268 AEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpKLTILMVTHDRAFLEQVCNQIVELDRGSL 366
                  567778888889999999********************************************9987665279********9999999999988888876 PP

  == domain 3    score: 37.4 bits;  conditional E-value: 6.5e-12
    TIGR03740  11 kkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGsliesPalyenlta..renlk.vrtlllglpesrieevlkivdlente.kkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiis 198
                  +++ ++++ +    + +   l G nG Gk+t  klltG l++t+Ge+ + +  +      ++G   ++ a  + +     + ++   ++ +g   ++  ++lk  ++   + + + + +s G ++rl i   l  kP++lildeP+   d   +  l   ++ f+  G+ +++ sh  +  +++adh+ + +
  MMETSP1061-20121228|17055_1 476 EERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGET-VVLGVYDQLGLKFDEIAEKQTVLEyvVDQIQgNDAKAMGETPNEARKLLKQFEFPRSRwQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK--GVLLVI-SHDRAFADKVADHLFVFE 663
                  67778888888888889999****************************9655.4555666666655554444333320023444134677777888999*******976652778999*****************************999999999999999985..776655.688899999999986654 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0    0.0024      0.17      18      97 ..     122     206 ..     107     214 .. 0.72
   2 !   28.5   0.0   2.2e-09   1.5e-07     129     212 ..     281     365 ..     267     380 .. 0.89
   3 !   47.2   0.0   4.6e-15   3.2e-13      16     210 ..     477     664 ..     464     681 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0024
    TIGR01288  18 vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlge....pvpararlar.akigvvpqfdnldreftvren 97 
                    + d+ f + +g    l+g ng+gkst  +++      ++g ++  ++    +  +++++ + ++i +v q   l  ++tv + 
  MMETSP1061-20121228|17055_1 122 WQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYSSstnyKYTGKVQVPKtVRISMVEQEPPLPADITVGDA 206
                  5577999***********************9998888888887766544111134556666542567777777777666666655 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 2.2e-09
    TIGR01288 129 advrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargk.tilltthlmeeaerlcdrlcvleagr 212
                   d  +++lsgg ++r++l++al+++p++l+ldept  l       + + l    +  k til+ th     e++c++++ l+ g 
  MMETSP1061-20121228|17055_1 281 QDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKlTILMVTHDRAFLEQVCNQIVELDRGS 365
                  577899*********************************999999999999988887769*******9999*****999998885 PP

  == domain 3    score: 47.2 bits;  conditional E-value: 4.6e-15
    TIGR01288  16 dkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenll..vfgryfglstreieevipsllefarleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktillt.thlmeeaerlcdrlcvlea 210
                  ++++++d+ +  ++g+ + l g ng gk+t ++l+ g   p eg++ + +  v +       ++g+  +fd++ ++ tv e ++  + g   +    + +e+   l +f    s+ + r++ lsgg +rrl + + l   p++lildep+   d  +       l s l + k +ll  +h    a+++ d l v+e 
  MMETSP1061-20121228|17055_1 477 ERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLG----VYDQLGL--KFDEIAEKQTVLEYVVdqIQGNDAKAMGETPNEARKLLKQFEFPRSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDT----LSALESYLEQFKGVLLViSHDRAFADKVADHLFVFEG 664
                  689******************************************9875554443....4567776..8************98644677777777777788888888999999************************************99888765....467899999999887752788999********99985 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.3e-06   0.00037     497     539 ..     124     166 ..     119     218 .. 0.78
   2 !   35.7   0.0   9.4e-12   6.4e-10     616     694 ..     286     369 ..     277     383 .. 0.86
   3 !   15.9   0.0   9.7e-06   0.00066     494     542 ..     478     526 ..     466     539 .. 0.90
   4 !   13.7   0.0   4.3e-05    0.0029     613     693 ..     588     669 ..     580     685 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.3e-06
    TIGR00958 497 lkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvl 539
                  l+d  f+l+ G   al+G +G GKSt   +l++ Y   +G v 
  MMETSP1061-20121228|17055_1 124 LRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVS 166
                  8999*****************************9998888775 PP

  == domain 2    score: 35.7 bits;  conditional E-value: 9.4e-12
    TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahrLstvek.adkilvlkkgsvvel 694
                  s lsgG ++r+A+  ALv +P vL+LDe t  L          ll +++s+ + t+l+++h     e+ +++i+ l +gs+ e 
  MMETSP1061-20121228|17055_1 286 SNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLagveWLADLLTDKNSNPKLTILMVTHDRAFLEQvCNQIVELDRGSLYEH 369
                  679******************************9866655667888899999*********8877766489*********9884 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 9.7e-06
    TIGR00958 494 kpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDg 542
                  + +l d ++    G+ ++l G +G GK t   ll    +Pt+G+v + +
  MMETSP1061-20121228|17055_1 478 RIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGE 526
                  557899***************************************8865 PP

  == domain 4    score: 13.7 bits;  conditional E-value: 4.3e-05
    TIGR00958 613 ekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek.adkilvlkkgsvve 693
                  e+ s lsgG + r+ i   L  kP  LiLDe     D ++  +l++  ++ +  +l+i h    + k ad+ +v + + vv+
  MMETSP1061-20121228|17055_1 588 ERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKGVLLVISHDRAFADKvADHLFVFEGDGVVK 669
                  55688****************************9999999999999888888899999999888877467888888777776 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0    0.0003      0.02       1      40 [.     124     163 ..     124     237 .. 0.89
   2 !   37.5   0.0   5.9e-12     4e-10     102     186 ..     275     359 ..     214     368 .. 0.85
   3 !   33.2   0.0   1.2e-10     8e-09       1     174 [.     481     648 ..     481     667 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.0003
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsg 40 
                  l+dvd+++++g   +lig  g gkst+l ++      ++g
  MMETSP1061-20121228|17055_1 124 LRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNG 163
                  689*************************998765555555 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 5.9e-12
    TIGR01184 102 vglreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvv 186
                  + +++ +d+  ++lsgg ++rva+  al   p++llldep   l     e l + l +   + ++t+lmvthd      +++++v
  MMETSP1061-20121228|17055_1 275 LKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIV 359
                  56788999*************************************9999***********************9654444555555 PP

  == domain 3    score: 33.2 bits;  conditional E-value: 1.2e-10
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrm.vvfqnysllpwltvrenialavdavlrdlskserreiveehielvgl.reaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                  l+d + +  +g+ i+l g  g gk+t+  l++g  +pt+g v + g+ +     d++ + f+   +   +tv e ++  ++   ++ +  e  +  ++ ++  ++ r+  + r++ lsgg ++r+ i   ls++p+ l+ldep    d  t + l+  l    e+ +   l+++hd
  MMETSP1061-20121228|17055_1 481 LDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEI-GETVVLGVYDQLgLKFD--EIAEKQTVLEYVVDQIQGNDAK-AMGETPNEARKLLKQFEFpRSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYL----EQFKGVLLVISHD 648
                  5788899999********************************99.55555555555513454..4556777777765555433322.233444444555555555144568899*****************************9887777776665544....3334445555555 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   8.4e-07   5.8e-05     352     398 ..     120     166 ..      73     217 .. 0.82
   2 !   27.9   0.0   2.8e-09   1.9e-07     476     555 ..     287     369 ..     264     384 .. 0.81
   3 !   31.7   0.0     2e-10   1.4e-08     349     554 ..     474     669 ..     454     677 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 8.4e-07
    TIGR02204 352 dqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGail 398
                  +++ l+++d++++ G + al+G  G Gkst l++l   y  ++G ++
  MMETSP1061-20121228|17055_1 120 ETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVS 166
                  6899***********************************99999886 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 2.8e-09
    TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLd.aeseqlvqqaleelmkgr.ttlviahrLatvlk.adrivvldkGriveq 555
                  +LsGG ++r+a+  a++++  +LLLde t+ L  a  e l     ++ ++ + t l++ h  a + + +++iv ld+G + e+
  MMETSP1061-20121228|17055_1 287 NLSGGERKRVALCAALVEEPDVLLLDEPTNFLSlAGVEWLADLLTDKNSNPKlTILMVTHDRAFLEQvCNQIVELDRGSLYEH 369
                  69******************************84556666666667777766256789998887754389********99775 PP

  == domain 3    score: 31.7 bits;  conditional E-value: 2e-10
    TIGR02204 349 arpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatv.lkadrivvldkGrive 554
                  +  ++  ld++++   +G+++ l G  G Gk+t  +ll    +P++G++ ++ + +  +  ++l  ++  ++ + +++   v++ i+    +a  e  ++a k  +  ef         +   er   LsGG ++r+ i   +  + + L+Lde     d ++  +++  le+       lvi+h  a   + ad++ v++   +v+
  MMETSP1061-20121228|17055_1 474 EAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGV-YDQLGLKFDEIAEKQTVLE-YVVDQIQGNDAKAMGETPNEARKLLKQFEFP-------RSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK--GVLLVISHDRAFAdKVADHLFVFEGDGVVK 669
                  5668899********************************************77766665.5778999999998888875.6889999877888877777766666666654.......47788*******************************999888888888888888764..467999997665515699999999777765 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.057       3.9      20      51 ..     123     154 ..     114     191 .. 0.89
   2 !   57.6   0.0   3.3e-18   2.3e-16     117     223 ..     264     370 ..     245     396 .. 0.90
   3 !   13.9   0.0   6.4e-05    0.0044      21     227 ..     481     677 ..     462     702 .. 0.69

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.057
    TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircv 51 
                   l +v++ + +g    +ig  g+gkst+++ +
  MMETSP1061-20121228|17055_1 123 QLRDVDFNLQRGAKAALIGRNGTGKSTFLKIL 154
                  5899***********************99865 PP

  == domain 2    score: 57.6 bits;  conditional E-value: 3.3e-18
    TIGR02314 117 ikrkvtellalvglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekg 223
                  + +k +e+ + + + + +d   snlsgg+++rva+  al  ep vll de t  l  a  + + +ll + n + +ltil++th+   + ++c+++  +d+g l e+ 
  MMETSP1061-20121228|17055_1 264 VLTKAEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSLYEHP 370
                  6678888888888899999999*********************************************************************************9974 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 6.4e-05
    TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalplel.entpkekikrkvtellalvglsdkk.dsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgelie..kgtvse 227
                  ld+ +    +g+ + + ga g gk+t+ + +    +pt+g+v +         ++ +     q+g+ f+   +   +tv++ v   ++  ++++  +  +   +ll    +   + +   s lsgg+++r+ i   l+ +p  l+ de +   d  t  ++   l     +++  +l+i+h+     ++ d++ v ++  +++  +g++se
  MMETSP1061-20121228|17055_1 481 LDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIG--------ETVVLGVYDQLGLKFDE--IAEKQTVLEYVVDQIQGnDAKAMGETPNEARKLLKQFEFPRSRwQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLE----QFKGVLLVISHDRAFADKVADHLFVFEGDGVVKdfQGSLSE 677
                  666666666777777777777777777777766666777776442........33333444566776664..44567777777666654133445566666666666666654332566799***************************99999887655555554....45556799***************999887777534566666 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0    0.0003     0.021       3      46 ..     125     164 ..     123     227 .. 0.77
   2 !   32.5   0.0   1.7e-10   1.1e-08     125     207 ..     287     369 ..     266     383 .. 0.92
   3 !   28.9   0.0   2.1e-09   1.4e-07     125     205 ..     592     668 ..     480     675 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.0003
    TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGe 46 
                  +dv+++l+rg   al+G  G+Gks+     l++l++   +++G 
  MMETSP1061-20121228|17055_1 125 RDVDFNLQRGAKAALIGRNGTGKSTF----LKILHESYLNSNGF 164
                  69*********************974....45555555555554 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.7e-10
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkiver 207
                  +lsGG  +Rv +  al+ e+ +l+ DePt  l ++    + +ll++ +++  l+il++thD + + ++ ++++ +++G + e+
  MMETSP1061-20121228|17055_1 287 NLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSLYEH 369
                  79********************************99999999************************************99886 PP

  == domain 3    score: 28.9 bits;  conditional E-value: 2.1e-09
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkiv 205
                   lsGG   R+ i   l +++ +li DeP+ d D++     L+ le+  e++   +l+i+hD +   ++ad++ v+e   +v
  MMETSP1061-20121228|17055_1 592 VLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLD----TLSALESYLEQFKGVLLVISHDRAFADKVADHLFVFEGDGVV 668
                  69***************************999976....699999999999999********************9866555 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0013     0.091     471     514 ..     122     165 ..      87     167 .. 0.83
   2 !   32.4   0.0   9.4e-11   6.4e-09     592     680 ..     286     378 ..     266     386 .. 0.85
   3 !   34.0   0.0   3.3e-11   2.2e-09     466     670 ..     474     668 ..     449     678 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0013
    TIGR01846 471 evlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrv 514
                    l+++ ++++ G    ++G+ G+Gkst+ k+l   y+  +G v
  MMETSP1061-20121228|17055_1 122 WQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFV 165
                  56899*****************************9999988865 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 9.4e-11
    TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickg..rtviiiahrlstvra.adrilvlekGkives.Gkheella 680
                  ++lsGG r+r+al  alv +P +l+lde t  l     + + + l++   +   t+++++h  + + + +++i+ l++G + e+ G+++  l+
  MMETSP1061-20121228|17055_1 286 SNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpkLTILMVTHDRAFLEQvCNQIVELDRGSLYEHpGSYSAYLE 378
                  79*********************************999999999977655422699999**877775449***********997578877665 PP

  == domain 3    score: 34.0 bits;  conditional E-value: 3.3e-11
    TIGR01846 466 kedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdg.vdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkiv 670
                  + ++  +l++++ d  +G+ i + G  G Gk+t+tkll     P +G+v + + v l++ d   l+ +   +  ++ +    + d i+  + ++  e   +a kl    +f  +       + +e+ + lsGG r+r+ +   l ++P  lilde     d ++ +++ + l++  kg  ++i   r  + + ad+++v+e   +v
  MMETSP1061-20121228|17055_1 474 EAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGEtVVLGVYDQLGLKFDE--IAEKQTV-LEYVVDQIQGNDAKAMGETPNEARKLLKQFEFPRS-------RWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQF-KGVLLVISHDRAFADKVADHLFVFEGDGVV 668
                  33445589*****************************************99762578999998887653..3333333.367999**999999999999999999988887543.......4568999************************************99999999886.677666666699999999999999855444 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   7.7e-08   5.3e-06     332     388 ..     107     163 ..      82     167 .. 0.91
   2 !   22.6   0.0     1e-07     7e-06     468     549 ..     285     369 ..     274     381 .. 0.81
   3 !   19.0   0.0   1.2e-06   8.4e-05     331     392 ..     463     524 ..     443     534 .. 0.82
   4 !    8.9   0.0    0.0015       0.1     469     543 ..     591     664 ..     585     675 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 7.7e-08
    TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsG 388
                  + ++ ++ +++g ++  l++++++++ G   al+Gr G Gkst +++l   y +++G
  MMETSP1061-20121228|17055_1 107 LTVEGLSCTHNGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNG 163
                  678899999***************************************999888877 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 1e-07
    TIGR02203 468 gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm..kgRttlviahRLstiek.aDrivvlddGkiver 549
                   s+LsGG R+R+a+  al+ +  +L+LDe t  L       + + L       + t l++ h  + +e+  ++iv ld G + e+
  MMETSP1061-20121228|17055_1 285 LSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNsnPKLTILMVTHDRAFLEQvCNQIVELDRGSLYEH 369
                  589*******************************988877777777654401456889999988888873689999999999987 PP

  == domain 3    score: 19.0 bits;  conditional E-value: 1.2e-06
    TIGR02203 331 kvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeill 392
                  ++ fr  + + + ++r +ld+++++  +G+++ l G  G Gk+t  +ll+  +ep++Ge+ +
  MMETSP1061-20121228|17055_1 463 TLTFRVKNENGEAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEI 524
                  455555555556678889****************************************9866 PP

  == domain 4    score: 8.9 bits;  conditional E-value: 0.0015
    TIGR02203 469 skLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviah.RLstiekaDrivvldd 543
                  s LsGG R Rl i   l      LiLDe     D +   ++   Le++      lvi+h R    + aD++ v++ 
  MMETSP1061-20121228|17055_1 591 SVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK--GVLLVISHdRAFADKVADHLFVFEG 664
                  78*************9999999******998888877777777777764..3568888844444556888888775 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   4.2e-05    0.0029     461     499 ..     116     154 ..     102     163 .. 0.86
   2 !   23.7   0.0   4.9e-08   3.3e-06     577     663 ..     276     367 ..     265     383 .. 0.68
   3 !   12.5   0.0   0.00012     0.008     463     510 ..     475     522 ..     455     528 .. 0.88
   4 !   17.9   0.0   2.7e-06   0.00018     587     664 ..     591     669 ..     587     680 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.2e-05
    TIGR03797 461 YekdgplvLddvslkiepGefvaivGaSGsGKStllrlL 499
                   +   +  L+dv ++ + G   a++G  G+GKSt+l++L
  MMETSP1061-20121228|17055_1 116 HNGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKIL 154
                  555566679****************************98 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 4.9e-08
    TIGR03797 577 glhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesl....eklkvtRiviAHRLSTirn.adrilvleeGrvv 663
                   +h + +++ ++lSGG r+R+ +  alv+ P +ll+DE T  L     +   + l    ++ k t +++ H    +++ +++i+ l+ G + 
  MMETSP1061-20121228|17055_1 276 KIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLtdknSNPKLTILMVTHDRAFLEQvCNQIVELDRGSLY 367
                  57888889999*****************************8876554443333331100344556666666444443225666666666655 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 0.00012
    TIGR03797 463 kdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsv 510
                  ++ + +Ldd +    +G+ + + Ga G GK t+ +lL g  +P++G+v
  MMETSP1061-20121228|17055_1 475 AEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEV 522
                  4567899***************************************98 PP

  == domain 4    score: 17.9 bits;  conditional E-value: 2.7e-06
    TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAH.RLSTirnadrilvleeGrvve 664
                  + lSGG r Rl i   l  kP+ l++DE     D  t ++    le++k   +vi H R    + ad+++v+e   vv+
  MMETSP1061-20121228|17055_1 591 SVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKGVLLVISHdRAFADKVADHLFVFEGDGVVK 669
                  579******************************************************6666677899999998555554 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0       1.5        99       1      17 [.     139     155 ..     139     170 .. 0.86
   2 !   42.0   0.0   1.9e-13   1.3e-11      83     193 ..     270     380 ..     256     493 .. 0.86
   3 !   27.0   0.0     7e-09   4.8e-07       2     174 ..     497     662 ..     496     675 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 1.5
    TIGR01187   1 lLGpsGsGkttlLrlla 17 
                  l+G  G+Gk+t L++l 
  MMETSP1061-20121228|17055_1 139 LIGRNGTGKSTFLKILH 155
                  6899**********985 PP

  == domain 2    score: 42.0 bits;  conditional E-value: 1.9e-13
    TIGR01187  83 eaLelvqleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePa 193
                  e+ +  +++++ ++  s+lsGG r+rval  a+v++P++LLlDep   L     + +   l + + +  +t+++vthD+     + ++i+ l +G +     +   y e +
  MMETSP1061-20121228|17055_1 270 EIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSLYEHPGSYSAYLEGK 380
                  45555667777788999**************************************************************999999999*9999999988777777666655 PP

  == domain 3    score: 27.0 bits;  conditional E-value: 7e-09
    TIGR01187   2 LGpsGsGkttlLrllaGleeldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvqleefa....krkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavl 174
                   G+ G Gktt  +ll G  e+ +G++ ++++ v  v     ++++ f + a     tv e v    ++++ +++ + e  +ea +l +  ef     + ++s lsGG r+r+ +   +  kP+ L+lDep    D  L     le  +  e++   ++++ hD+  a  ++d + v+
  MMETSP1061-20121228|17055_1 497 AGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVYD---QLGLKFDEIA--EKQTVLEYVVD--QIQGNDAKAMGETPNEARKLLKQFEFPrsrwQERISVLSGGERRRLQILSVLSVKPNFLILDEPSV--DCDLDTLSALE--SYLEQFKGVLLVISHDRAFADKVADHLFVF 662
                  699***************************99888764...6899***988..6899**99986..5666666666666666666665555541111668899**************************954..44454433333..333333333445677777777777766665 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00047     0.032     350     396 ..     117     163 ..     100     168 .. 0.90
   2 !   28.2   0.0   2.2e-09   1.5e-07     452     547 ..     270     366 ..     262     370 .. 0.86
   3 !   27.1   0.0   4.8e-09   3.3e-07     342     551 ..     466     671 ..     427     674 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00047
    TIGR01194 350 essegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeG 396
                  ++ e+++l  +d+++++G    ++G nG Gkst++k+l   y   +G
  MMETSP1061-20121228|17055_1 117 NGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNG 163
                  6789999*******************************999987776 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 2.2e-09
    TIGR01194 452 eledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGk.tilvishddryf.eladrlikladGkv 547
                  e++ k+k++ l+  + ++ls G+rkr+al +a +ee  vlllde +     a    +  +ll d   + k til+++hd  ++ ++ ++++ l  G +
  MMETSP1061-20121228|17055_1 270 EIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVE-WLADLLTDKNSNPKlTILMVTHDRAFLeQVCNQIVELDRGSL 366
                  899*******999999****************************98776665443.5688999999888879*******999845899****999875 PP

  == domain 3    score: 27.1 bits;  conditional E-value: 4.8e-09
    TIGR01194 342 vrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyrdlfsavfadyylfddlv....qpdekkqasl.dqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryf.eladrlikladGkvvkev 551
                   r++ ++ e+ e   l   +    +G+ + + G nG Gk+t+ kll G   p eGe+ + Ge+v     d+    f  +     +++ +v    + d k    + ++a++ l+++e+       +   s    ls G+r+rl +++    +   l+lde + d d        e  l ++k     +lvishd  +  ++ad+l  +    vvk+ 
  MMETSP1061-20121228|17055_1 466 FRVKNENGEAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEI-GETVVLGVYDQLGLKFDEIAEKQTVLEYVVdqiqGNDAKAMGETpNEARKLLKQFEFPRSR--WQERIS---VLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSA-LESYLEQFK---GVLLVISHDRAFAdKVADHLFVFEGDGVVKDF 671
                  46667788889999999***************************************987.8999988888888889988877655555440000555555544425677888888776533..334445...89********99887766666899*******99775443.344444444...578999**988863599999998888888886 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   3.4e-05    0.0023     447     532 ..      78     166 ..      67     217 .. 0.71
   2 !   23.8   0.0   4.6e-08   3.2e-06     608     696 ..     284     377 ..     265     381 .. 0.78
   3 !   23.9   0.0   4.3e-08   2.9e-06     489     688 ..     480     669 ..     425     678 .. 0.70

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.4e-05
    TIGR01193 447 rlnevylvdsefkekkkl..telenlngdievndvsysy.GygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeil 532
                  r  e++ v s   ++     ++++ +   ++v+ +s  + G  +  l d+++++++  k +l+G  G+Gkst+ k+l + + +++G ++
  MMETSP1061-20121228|17055_1  78 RRTELFAVTSTDGSSSSSssSSSSASAPVLTVEGLSCTHnGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVS 166
                  55666666665544443300334444455777878776514445579********************************9999988775 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 4.6e-08
    TIGR01193 608 eassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdk...tiifvah.rlsvakksdkiivldeGkiieq.Gshkell 696
                  + s++sgG ++r+al  al+ + +vl+lde t  l l   + + + l   +     ti++v+h r  + +  ++i+ ld+G + e+ Gs++  l
  MMETSP1061-20121228|17055_1 284 SLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpklTILMVTHdRAFLEQVCNQIVELDRGSLYEHpGSYSAYL 377
                  4579****************************9998776665555444433213359*****955666777899*********99658887766 PP

  == domain 3    score: 23.9 bits;  conditional E-value: 4.3e-08
    TIGR01193 489 vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsvakks.dkiivldeGkiie 688
                  +l+d + +  + ++i+l G  G Gk+t++kll +  ++++Ge++++++ +  +   +l    + +       + ++le ++ + + n  + + +   e   + ++ e     +q ++    s +sgG ++rl +   l ++ + lilde + + dl t   + e  l+  +  ++ ++h    a+k+ d++ v++  +++ 
  MMETSP1061-20121228|17055_1 480 MLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVYD-QLGLKFDEI-----AEKQTVLEYVVDQIQGNDAKAMGETPNEARKLLKQFEFPRSRWQERI----SVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSAL-ESYLEQFKGVLLVISHDRAFADKVaDHLFVFEGDGVVK 669
                  6899999***************************************998877643.343334444.....44556777665444444333333333333333344444444455555....589*************************9888777665554.55555546677888887777766526666666666665 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.3e-07     9e-06      12     126 ..     119     235 ..     107     248 .. 0.79
   2 !   19.8   0.0   6.9e-07   4.7e-05     117     212 ..     264     359 ..     247     368 .. 0.83
   3 !    6.1   0.0      0.01      0.68      17      49 ..     481     513 ..     466     529 .. 0.83
   4 !   14.6   0.0   2.6e-05    0.0018     394     477 ..     583     663 ..     548     674 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.3e-07
    TIGR02633  12 ggvkaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelk.assirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydam.vlrakellr 126
                  g+   l ++d++l+ G   +l G nG+Gkst++k+l   y   +     + + ++ k + +++  +   i+++ qe  l  +++v + i+   e t + g  +++ m v r  +l+ 
  MMETSP1061-20121228|17055_1 119 GETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYSSSTNYKyTGKVQVPKTVRISMVEQEPPLPADITVGDAILGITETTTSAGSSSNNRMdVVRKYRLVS 235
                  56667999****************************999976654334444444444156788888899********************9888998888888887773556666655 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 6.9e-07
    TIGR02633 117 mvlrakellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkak.gvacvyishkleevkavsdtis 212
                  ++ +a+e+  +lk++  ++   +s+l +G+++ v +  al  +  +l+ldep+  l+ + +e l d++ d + +  ++ + ++h    ++ v+++i 
  MMETSP1061-20121228|17055_1 264 VLTKAEEIATKLKIHHLQDQS-LSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpKLTILMVTHDRAFLEQVCNQIV 359
                  567889999999999988877.899999999999999999999999999999999999999999999999876526777888999888888888886 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.01
    TIGR02633  17 ldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                  ld+ +     G+ + l G nG Gk+t+ k+l+g
  MMETSP1061-20121228|17055_1 481 LDDFNYDFCNGDRICLAGANGVGKTTFTKLLTG 513
                  677777788999*******************98 PP

  == domain 4    score: 14.6 bits;  conditional E-value: 2.6e-05
    TIGR02633 394 taspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvig 477
                   +  +  i+ lsGG++++  +  +l+++p+ lildep+   d+ +   +   ++q+  +Gv ++v+s + a    ++d ++v++
  MMETSP1061-20121228|17055_1 583 RSRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQF--KGV-LLVISHDRAFADKVADHLFVFE 663
                  4555567999*******999999**************9999988776666666554..565.5667777777777777777764 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.1      0.01      0.71      33      73 ..     116     156 ..      87     179 .. 0.79
   2 !   29.2   0.0   1.1e-09   7.5e-08     163     197 ..     284     318 ..     267     366 .. 0.81
   3 ?    3.1   0.0     0.091       6.2      36      74 ..     476     514 ..     445     531 .. 0.75
   4 !   19.8   0.0   7.6e-07   5.2e-05     162     202 ..     588     630 ..     582     638 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.01
    TIGR00955  33 rkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalaf 73 
                  ++ +e   l++v   ++ G   A++G  G GK+T l++l +
  MMETSP1061-20121228|17055_1 116 HNGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHE 156
                  444666678888889999*******************9975 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 1.1e-09
    TIGR00955 163 rvkglSgGerkRlalaselltdPilLfcDEPTsGL 197
                   +  lSgGerkR+al   l+++P +L++DEPT  L
  MMETSP1061-20121228|17055_1 284 SLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFL 318
                  4567****************************866 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.091
    TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafr 74 
                  +e+ +l +    + +G+ + + G+ G GKtT  + l+  
  MMETSP1061-20121228|17055_1 476 EERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGE 514
                  677888888889999****************99888765 PP

  == domain 4    score: 19.8 bits;  conditional E-value: 7.6e-07
    TIGR00955 162 grvkglSgGerkRlalaselltdPilLfcDEPT..sGLDsfsa 202
                  +r+ +lSgGer+Rl + s l  +P +L++DEP     LD  sa
  MMETSP1061-20121228|17055_1 588 ERISVLSGGERRRLQILSVLSVKPNFLILDEPSvdCDLDTLSA 630
                  67889***************************83346777777 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   2.4e-05    0.0016       2      62 ..     105     169 ..     104     239 .. 0.83
   2 !   15.1   0.0     4e-05    0.0027     139     217 ..     285     367 ..     263     371 .. 0.79
   3 !    8.8   0.0    0.0031      0.22      25      59 ..     489     523 ..     473     531 .. 0.89
   4 !   15.4   0.0     3e-05    0.0021     117     212 ..     565     663 ..     552     673 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 2.4e-05
    TIGR02323   2 pllevselsksygskkgcr...vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyes 62 
                  p+l+v++ls ++ ++++ +   v+f l  G   +++G  G+Gkst+lk l +  l ++G v+  s
  MMETSP1061-20121228|17055_1 105 PVLTVEGLSCTHNGGETWQlrdVDFnLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYS 169
                  89******988877766544489*****************************9999999886433 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 4e-05
    TIGR02323 139 paafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth.lavarllaqrllvmkqGrvv 217
                   +++sGG ++r+ +  +lv +p ++++ ept  l       l  ll     + +l++++vth  a    ++++++ + +G + 
  MMETSP1061-20121228|17055_1 285 LSNLSGGERKRVALCAALVEEPDVLLLdEPTNFLSLAGVEWLadLLTDKNSNPKLTILMVTHdRAFLEQVCNQIVELDRGSLY 367
                  4689*******************99999***998444444444699999999**********888888888888777777665 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.0031
    TIGR02323  25 ypGevlgivGesGsGkstllkalaarlladaGevt 59 
                    G+ +++ G  G Gk+t+ k l+++l +++Gev+
  MMETSP1061-20121228|17055_1 489 CNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVE 523
                  57999***************************997 PP

  == domain 4    score: 15.4 bits;  conditional E-value: 3e-05
    TIGR02323 117 yGkiraaak.wlekveidaari..kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll.llrglvrelglaviivth.lavarllaqrllvmk 212
                   G+  ++a+  l++ e +++r   + + +sGG ++rlqi  +l  +p+++++ ep+      +   l  l + + +++   ++++h  a a  +a+ l+v++
  MMETSP1061-20121228|17055_1 565 MGETPNEARkLLKQFEFPRSRWqeRISVLSGGERRRLQILSVLSVKPNFLILdEPSV---DCDLDTLsALESYLEQFKGVLLVISHdRAFADKVADHLFVFE 663
                  566655555499*********95556789******************9888869963...333333335556666666666666666666777777766666 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0    0.0023      0.16     351     393 ..     124     166 ..     100     179 .. 0.90
   2 !   15.6   0.0   1.5e-05     0.001     470     506 ..     286     322 ..     268     386 .. 0.72
   3 !   23.2   0.0   7.5e-08   5.1e-06     302     510 ..     416     631 ..     407     689 .. 0.70

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0023
    TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqil 393
                  +rdv f+ + g   a++g  g+gk+t++ +l   y  ++g+++
  MMETSP1061-20121228|17055_1 124 LRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVS 166
                  68******************************99999888875 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.5e-05
    TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvet 506
                  ++lsgger+r+a+  a++ +  +l+lde t  l +  
  MMETSP1061-20121228|17055_1 286 SNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAG 322
                  78****************************9987654 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 7.5e-08
    TIGR01192 302 arakledffdledsvkereepa..darelknvkg......avefrdisfef..anssqg.......vrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearv 510
                   +a+++ f++le s+k r      d+ +++n         +v ++ ++  f   n + g       + d  ++   g+ + + g  g gktt+  ll    +p++g++ i  + +  v  + l   +  + +   +l+    ++i+    +a  e   ea k     +f  +r         er + lsgger+rl i   +      l+lde +   d++t   +
  MMETSP1061-20121228|17055_1 416 GKARIDAFYKLEKSTKPRPRDPnlDLVQISNGDTrrigtkTVSMNGVTLTFrvKNEN-GeaeerimLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLGVY-DQLGLKFDEIAEKQTVLEYV-VDQIQGNDAKAMGETPNEARKLLKQFEFPRSR-------WQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSAL 631
                  578888899999988877543302455555532111112256666666555223322.21112222568899999***********************************988888875.45666677777777777764.46777666666666666666666666665555.......5699**************9998888899*****9999999886554 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   5.1e-08   3.5e-06     470     654 ..     125     363 ..      66     369 .. 0.86
   2 ?    5.3   0.0     0.017       1.2     465     507 ..     477     520 ..     462     532 .. 0.86
   3 !   15.7   0.0   1.3e-05   0.00086     580     656 ..     589     666 ..     550     669 .. 0.89
   4 ?   -1.2   0.2       1.6   1.1e+02     266     313 ..     697     744 ..     688     776 .. 0.61

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 5.1e-08
    TIGR00954 470 eeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg...............glltkpeegklFyvPqrPYmslg.tlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg..................................wdavqdWk.dvLsgGekqRiamARlfyHkPkfavLDEctsAvsvd.vE...dklyelakevgitllsvshrks.LwkyHeylLkldg 654
                   ++ f+++ G +  +iG nG GKs + +il e +   +               g+ ++p+  ++  v q P +    t+ d i+    +e  ++ g s ++ ++++ + +L     + g+                                     +qd +   LsgGe++R+a+   +   P   +LDE t+ +s+  vE   d l ++  + ++t+l v+h ++ L +  + +++ld+
  MMETSP1061-20121228|17055_1 125 RDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNgfvssyssstnykytGKVQVPKTVRISMVEQEPPLPADiTVGDAILG--ITETTTSAGSSSNNRMDVVRKYRLVSQQAESGSnfdadvfmkasaemdylggwdvltkaeeiatklkIHHLQDQSlSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAgVEwlaDLLTDKNSNPKLTILMVTHDRAfLEQVCNQIVELDR 363
                  5789****************************99888899**********************************999****9984..455667778888888888888888877777777********************************9988888875489*****************************99975344333666677777889999999855414455666666665 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.017
    TIGR00954 465 gdvlieeLsfevksGnhlLiiGPnGcGKsslfRil.gelWPvyg 507
                    +++++ +++  +G  + + G nG GK  + ++l gel P+ g
  MMETSP1061-20121228|17055_1 477 ERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLtGELEPTEG 520
                  5688899999999*******************998578888876 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 1.3e-05
    TIGR00954 580 WkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrksLw.kyHeylLkldgkG 656
                     vLsgGe+ R+ +  ++  kP+f +LDE      +d   +l + + +++  ll +sh ++   k  ++l  ++g+G
  MMETSP1061-20121228|17055_1 589 RISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFKGVLLVISHDRAFAdKVADHLFVFEGDG 666
                  4569****************************99999999*******************8776537888888888887 PP

  == domain 4    score: -1.2 bits;  conditional E-value: 1.6
    TIGR00954 266 kltveeaalegeyrylhsrlisnsEEiAfyqGnkvEkekvkesfekLv 313
                  +l+  +++++++  +++    + +E   f + +k+E +++++s ekL 
  MMETSP1061-20121228|17055_1 697 ELAQSNSSSNSKQTSYKEDRAKRNEVRNFVRQTKKEMTNIERSLEKLK 744
                  555555555555555555555555555555555555555555555543 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0072      0.49      33      82 ..     117     166 ..     112     238 .. 0.69
   2 !   29.6   0.0     1e-09   7.2e-08     145     244 ..     268     367 ..     253     382 .. 0.85
   3 !    8.6   0.0    0.0026      0.18     155     244 ..     584     668 ..     557     756 .. 0.85

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0072
    TIGR03415  33 ktGlvlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvl 82 
                  + G++ + +d+ +++++G  + l+G  G+Gks++l+ +      s G v+
  MMETSP1061-20121228|17055_1 117 NGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVS 166
                  678899999**************************998776666666544 PP

  == domain 2    score: 29.6 bits;  conditional E-value: 1e-09
    TIGR03415 145 veeqlelvglaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGriv 244
                  +ee    + +++ +d+   +lsGG ++rv l  a+  e d+ll+deP   l     + l d l +  ++ k ti++v+hd     ++ n+i  ++ G + 
  MMETSP1061-20121228|17055_1 268 AEEIATKLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVCNQIVELDRGSLY 367
                  44444455567778999********************************999999999**********************98888999999888888775 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.0026
    TIGR03415 155 aeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGriv 244
                  + W+++ +  lsGG ++r+ +   ++++ + l++deP    d    + l   l    +++k  ++ +shd   a k+ +++ + eg  +v
  MMETSP1061-20121228|17055_1 584 SRWQER-ISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYL----EQFKGVLLVISHDRAFADKVADHLFVFEGDGVV 668
                  678876.568***************************8877755556665544....5567778999***99999999999999987776 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.6   1.8e+02     959     977 ..     137     155 ..     126     165 .. 0.71
   2 !   16.6   0.0     2e-06   0.00014    1048    1139 ..     274     367 ..     262     374 .. 0.89
   3 !   26.2   0.0   2.7e-09   1.9e-07     939    1125 ..     474     654 ..     457     668 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 2.6
    TIGR01257 959 taflghngagktttlsilt 977
                  +a++g ng+gk+t l il 
  MMETSP1061-20121228|17055_1 137 AALIGRNGTGKSTFLKILH 155
                  5677777777777777765 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 2e-06
    TIGR01257 1048 dtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsg..rtiimsthhmdeadllgdriaiisqgrly 1139
                      +hh +++   +lsgg +++++++ a+v +  v++ldept  +       + dll    s    ti+m th     + + ++i  + +g ly
  MMETSP1061-20121228|17055_1  274 KLKIHHLQDQSLSNLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNpkLTILMVTHDRAFLEQVCNQIVELDRGSLY 367 
                   5678*****************************************************9988863369******999999999999999999998 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 2.7e-09
    TIGR01257  939 epsgrpavdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietnldavrqslgmcpqhnilfhhltvaehilfyaql.kgrsweeaqlemeamledtglhhkr.neeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadl 1125
                   e   r  +d +n  f + +  ++ g ng gktt   +ltg l pt g v +g    et +  v + lg+    + +  + tv e+++   q    +++ e+  e   +l++  +   r +e    lsgg +r+l +   +    + ++ldep+   d  +  ++   l +++ g  +++s h    ad 
  MMETSP1061-20121228|17055_1  474 EAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIG----ETVVLGVYDQLGLK--FDEIAEKQTVLEYVVDQIQGnDAKAMGETPNEARKLLKQFEFPRSRwQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCDLDTLSALESYLEQFK-GVLLVIS-HDRAFADK 654 
                   5567888999********999******************************9....67777788889984..556778999999999877751568999*************9998882456788***********9999999*********99988766655555554444.4333333.44445555 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0027      0.19     631     686 ..     101     156 ..      67     176 .. 0.78
   2 !   22.2   0.0   6.4e-08   4.4e-06     760     877 ..     287     406 ..     279     427 .. 0.82
   3 !    7.5   0.0    0.0017      0.12     627     792 ..     455     624 ..     442     767 .. 0.72

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0027
    TIGR00957 631 dgegnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsalla 686
                  + ++  +tv+  + t   +e   l+ +++++ +ga  a++g+ g gks++l  l  
  MMETSP1061-20121228|17055_1 101 SASAPVLTVEGLSCTHNGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHE 156
                  44456678888888999999999999999999999999999999999999987755 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 6.4e-08
    TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpqv.dviivlsdgkisem.gsyqelld.rdgafaeflrtyasaedeldaeddgva 877
                  nlsgg+++rv+l+ a+  + d+ lld+p   + +  +   + +++  k    + t ++vth  ++l qv + i+ l  g + e  gsy + l+ ++  +a    + a+a+ + ++e +++ 
  MMETSP1061-20121228|17055_1 287 NLSGGERKRVALCAALVEEPDVLLLDEPTNFL-SLAGVEWLADLLTDKNSNPKLTILMVTHDRAFLEQVcNQIVELDRGSLYEHpGSYSAYLEgKEERLAAEDAAIANAKSKYKVELEWMR 406
                  9***************************8876.556777777888888888889999***********934566689999998559***99973567788888888888888888888765 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0017
    TIGR00957 627 rsikdgegnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsvay.vpqqawiqndslren..il..fgkaleekyykav....leacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiyllddplsavd 792
                  ++++   g ++t +        +e   l+ ++++  +g  +++ g  g gk+++   l +e++  eg+v++  +v   v +q  ++ d + e+  +l     +++ +  ka+     ea  ll ++e+      +   e+   lsgg+++r+ +   +  + +  +ld+p    d
  MMETSP1061-20121228|17055_1 455 KTVSMN-GVTLTFRVKNENGEAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVEIGETVVLgVYDQLGLKFDEIAEKqtVLeyVVDQIQGNDAKAMgetpNEARKLLKQFEFPR----SRWQERISVLSGGERRRLQILSVLSVKPNFLILDEPSVDCD 624
                  555443.555555555555566677788999999999999****************9*************987765438888888777766542143222345555555554111145666777777644....44555556789999999888877777778888888855444 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1    0.0001    0.0071    1217    1266 ..     106     155 ..      67     174 .. 0.83
   2 !   10.7   0.0    0.0002     0.014     548     626 ..     287     367 ..     266     387 .. 0.69
   3 !   11.0   0.0   0.00016     0.011     441     484 ..     480     523 ..     471     533 .. 0.91
   4 ?    1.0   0.0      0.16        11    1353    1428 ..     592     666 ..     578     730 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.0001
    TIGR01271 1217 qmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsall 1266
                    +tv++l++ +  +    l+d+ f ++ g +  l+gr g+gkst+l  l 
  MMETSP1061-20121228|17055_1  106 VLTVEGLSCTHNGGETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILH 155 
                   578888888888777889***************************99875 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.0002
    TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllank.trilvtsklehlkk.adkilllhegscy 626
                   lsgg+r r++l+ a+  + d+ lld p ++l +     + +    k    k t ++vt     l + +++i+ l  gs y
  MMETSP1061-20121228|17055_1 287 NLSGGERKRVALCAALVEEPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKlTILMVTHDRAFLEQvCNQIVELDRGSLY 367
                  59*****************************99876554444444444444523345666666666524566667777766 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00016
    TIGR01271 441 vlknislklekgqllavagstgsgkssllmmilgelepsegkik 484
                  +l + ++ + +g+ +++ag+ g gk+++  ++ gelep+eg + 
  MMETSP1061-20121228|17055_1 480 MLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELEPTEGEVE 523
                  5789999999*******************************986 PP

  == domain 4    score: 1.0 bits;  conditional E-value: 0.16
    TIGR01271 1353 vlsnghkqlmclarsils.kakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegss 1428
                   vls g ++ + +  s+ls k + l+ldeps   d  tl  +   l q f    +++s  r  a    ++++v eg  
  MMETSP1061-20121228|17055_1  592 VLSGGERRRLQIL-SVLSvKPNFLILDEPSVDCDLDTLSALESYLEQ-FKGVLLVISHDRAFADKVADHLFVFEGDG 666 
                   7888887766665.555449999********9999999999988876.77788888888877776677777777654 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   1.4e-07   9.8e-06      74     240 ..     121     318 ..      58     347 .. 0.81
   2 !    6.7   0.0    0.0036      0.25     755     825 ..     452     529 ..     390     539 .. 0.71
   3 ?    2.7   0.0     0.056       3.8     210     246 ..     593     631 ..     587     642 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 1.4e-07
    TIGR00956  74 fdilkdvdglikpgelvvvLGrPgsGcstlLksias...ktegfkkgkeskitYdglskeeikkhyrgdvvYsaetdvHlp.sltvketL.....dfaarlktpqnRvkgvsreeyakk..............................ladvvlaiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGL 240
                  +  l+dvd  ++ g    ++Gr g+G+st+Lk +     + +gf  + +s+++Y+  +k ++ k  r   + + e++  lp  +tv++ +      ++ +  + +nR++ v +   +++                               a+ +++ + ++h ++    n     +sGGerkRv++  +lv ++ ++++D+ t  L
  MMETSP1061-20121228|17055_1 121 TWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHEsylNSNGFVSSYSSSTNYKYTGKVQVPKTVR---ISMVEQEPPLPaDITVGDAIlgiteTTTSAGSSSNNRMDVVRKYRLVSQqaesgsnfdadvfmkasaemdylggwdvltKAEEIATKLKIHHLQDQSLSN-----LSGGERKRVALCAALVEEPDVLLLDEPTNFL 318
                  555899999999999999**************9975222678999999*******************...555566666652366666541111144555567899999999999888899**********************999998888889999999999888777.....9*************************99766 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0036
    TIGR00956 755 sgeeifewrdltyevkik.....kekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRv..ttGvitegdrlv 825
                  +g+++ ++  +t + ++k     +e+r +Ld+ +  +  G    L Ga G Gktt    L++ +  t G ++ g+ +v
  MMETSP1061-20121228|17055_1 452 IGTKTVSMNGVTLTFRVKnengeAEERIMLDDFNYDFCNGDRICLAGANGVGKTTFTKLLTGELepTEGEVEIGETVV 529
                  45666666666555555411222578*********9*********************999987533677777777766 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.056
    TIGR00956 210 vsGGerkRvsiaevlvakakiqcwDnatrG..LDsatal 246
                  +sGGer+R+ i  vl +k++++++D+ +    LD+  al
  MMETSP1061-20121228|17055_1 593 LSGGERRRLQILSVLSVKPNFLILDEPSVDcdLDTLSAL 631
                  799999999999999999999999997754115555555 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.18        12     618     683 ..     119     184 ..     103     196 .. 0.67
   2 !   12.5   0.0   9.6e-05    0.0066     824     891 ..     283     348 ..     271     363 .. 0.82
   3 !    6.2   0.0    0.0075      0.51     485     550 ..     590     650 ..     574     667 .. 0.53
   4 ?    4.4   0.2     0.027       1.8     211     290 ..     686     770 ..     681     794 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.18
    TIGR00630 618 akennlkdidvsiplglltvitGvsgsGkstLindiLvkaleerlnkaktekgkvkeieGlekldk 683
                   ++  l+d+d ++  g   ++ G  g Gkst+++ +   +l+++   +++++++  + +G  ++ k
  MMETSP1061-20121228|17055_1 119 GETWQLRDVDFNLQRGAKAALIGRNGTGKSTFLKILHESYLNSNGFVSSYSSSTNYKYTGKVQVPK 184
                  556679999999999999999999999999988644444454443334444444445555555555 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 9.6e-05
    TIGR00630 824 qpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGn.tvvviehnl 891
                  q+   LsGGe +rv L++ L +      + +lDePt  L ++ ++ L ++l    ++ + t++++ h+ 
  MMETSP1061-20121228|17055_1 283 QSLSNLSGGERKRVALCAALVE---EPDVLLLDEPTNFLSLAGVEWLADLLTDKNSNPKlTILMVTHDR 348
                  78899*************9976...56799*******************99877666543788888875 PP

  == domain 3    score: 6.2 bits;  conditional E-value: 0.0075
    TIGR00630 485 aetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDee 550
                  ++ lsGGe++r+++ + +  +    + +lDePs+       + L      l +    l+v+ hD  
  MMETSP1061-20121228|17055_1 590 ISVLSGGERRRLQILSVLSVK--PNFLILDEPSVDCD---LDTLSALESYLEQFKGVLLVISHDRA 650
                  445666666666555555433..34556666665432...22222222233333344555555554 PP

  == domain 4    score: 4.4 bits;  conditional E-value: 0.027
    TIGR00630 211 erkrlaesvetalklseGlleveledeeesa.kkeel....fskkaaleeaglsleeleprlfsfnsplgaCpeCkGlGvkleld 290
                  e++++++sv   l++s+   + + ++ +e+  k++e+     ++k+ +++ + sle+l+p+  s +s ++  ++ +G  +  el 
  MMETSP1061-20121228|17055_1 686 ENQKIQDSVAGELAQSNSSSNSKQTSYKEDRaKRNEVrnfvRQTKKEMTNIERSLEKLKPKAASVQSEIDGTSTDAGWTILAELT 770
                  6789999999999888887776666655544233333677667788899999*****************9999988888777764 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.92        63     195     213 ..     131     149 ..     123     154 .. 0.82
   2 ?    6.4   0.0     0.025       1.7     184     213 ..     478     506 ..     469     511 .. 0.81
   3 ?    4.2   2.1      0.12       8.1      88     148 ..     697     755 ..     676     797 .. 0.39

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.92
    TIGR03499 195 lekggviaLvGptGvGKTT 213
                  l++g   aL+G  G GK T
  MMETSP1061-20121228|17055_1 131 LQRGAKAALIGRNGTGKST 149
                  5667789**********99 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.025
    TIGR03499 184 klsvkkeedeilekggviaLvGptGvGKTT 213
                  ++  ++++ ++ +    i L G  GvGKTT
  MMETSP1061-20121228|17055_1 478 RIMLDDFNYDFCNGD-RICLAGANGVGKTT 506
                  555677777777777.799**********9 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.12
    TIGR03499  88 ekeaeekaaeaaqeaekkleeae.......eelrkelkalkellekqlselaleeedperakllkkll 148
                  e  +++++++++q+  k++ +++       ++ +ke+ +++++lek+           ++a++ ++ +
  MMETSP1061-20121228|17055_1 697 ELAQSNSSSNSKQTSYKEDRAKRnevrnfvRQTKKEMTNIERSLEKLKP---------KAASVQSEID 755
                  2222222222222222223323311222234444444444444444433.........3333333332 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0028      0.19       3      23 ..     138     158 ..     137     162 .. 0.93
   2 ?    2.6   0.0      0.32        22       2      20 ..     494     512 ..     493     517 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0028
    TIGR00152   3 gltGgigsGKstvakilkdky 23 
                  +l+G+ g+GKst +kil++ y
  MMETSP1061-20121228|17055_1 138 ALIGRNGTGKSTFLKILHESY 158
                  89*****************99 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.32
    TIGR00152   2 igltGgigsGKstvakilk 20 
                  i l G  g+GK+t +k+l+
  MMETSP1061-20121228|17055_1 494 ICLAGANGVGKTTFTKLLT 512
                  7899************997 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.1     0.086       5.9       4      39 ..     135     174 ..     132     191 .. 0.65
   2 ?    6.5   0.0      0.02       1.4       5      42 ..     493     529 ..     490     543 .. 0.75
   3 ?    0.0   0.1         2   1.4e+02      77     157 ..     655     738 ..     647     744 .. 0.66

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.086
    TIGR00231   4 ikivivGhvdvGKstLl....nsllknkisiteskpgvtr 39 
                  +k +++G+ + GKst l    +s+l  +++ +++ + +  
  MMETSP1061-20121228|17055_1 135 AKAALIGRNGTGKSTFLkilhESYLNSNGFVSSYSSSTNY 174
                  57789**********8822223455555566666555554 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.02
    TIGR00231   5 kivivGhvdvGKstLlnsllknkisiteskpgvtrdyv 42 
                  +i + G  +vGK+t ++ l+++   +te +  +++++v
  MMETSP1061-20121228|17055_1 493 RICLAGANGVGKTTFTKLLTGEL-EPTEGEVEIGETVV 529
                  68999***********9999876.66666556666665 PP

  == domain 3    score: 0.0 bits;  conditional E-value: 2
    TIGR00231  77 verslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd...dlktkvkslfaklnaep.iielsaetgknidk 157
                  v+  l+v+++   v+d++  l +++ +   e++++++   +++     ++   + +t++k+++ak n  + +++++ ++++ni+ 
  MMETSP1061-20121228|17055_1 655 VADHLFVFEGDGVVKDFQGSL-SEYGSCLVELENQKIQDSVAGELAQSNSssnSKQTSYKEDRAKRNEVRnFVRQTKKEMTNIER 738
                  566667777777777777777.333333333333555555555544444445667899999999999999899999999999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       329  (0.0802048); expected 82.0 (0.02)
Passed bias filter:                      206  (0.0502194); expected 82.0 (0.02)
Passed Vit filter:                        85  (0.0207216); expected 4.1 (0.001)
Passed Fwd filter:                        60  (0.014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              60  [number of targets reported over threshold]
# CPU time: 1.66u 0.18s 00:00:01.84 Elapsed: 00:00:00.96
# Mc/sec: 1101.28
//
Query:       MMETSP1061-20121228|17052_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 1079.91
//
Query:       MMETSP1061-20121228|17057_1  [L=529]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (529 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       332  (0.0809361); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 2115.83
//
Query:       MMETSP1061-20121228|17059_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.37
# Mc/sec: 1273.52
//
Query:       MMETSP1061-20121228|17062_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 1161.50
//
Query:       MMETSP1061-20121228|17058_1  [L=869]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (869 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.12s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 2867.46
//
Query:       MMETSP1061-20121228|17063_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.39
# Mc/sec: 998.38
//
Query:       MMETSP1061-20121228|17064_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 1139.02
//
Query:       MMETSP1061-20121228|17065_1  [L=226]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (226 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1355.89
//
Query:       MMETSP1061-20121228|17066_1  [L=1049]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-13   45.0   0.0    5.5e-06   22.5   0.0    2.4  3  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.3e-09   5.5e-06      96     163 ..     219     286 ..     147     289 .. 0.72
   2 ?   -4.4   0.0      0.18   7.5e+02     132     158 ..     328     354 ..     323     362 .. 0.82
   3 !   19.8   0.0   8.8e-09   3.6e-05     126     156 ..     451     481 ..     419     491 .. 0.78

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.3e-09
    TIGR00870  96 vdaveailllllkaarksltlselandestseftkgitalilAihkqnyeivklLlekgasvearakg 163
                   + v+++  ++ k+++  ++ + +   +  ++    it++++Aih+q++e vklL + gas++ +  g
  MMETSP1061-20121228|17066_1 219 EKSVQEVGHHQHKHNKVAKKKRYYCPLNLNERDEDEITPIHVAIHCQKLEHVKLLCKAGASLHKKSDG 286
                  455666666777766665555555555666666778*************************9977666 PP

  == domain 2    score: -4.4 bits;  conditional E-value: 0.18
    TIGR00870 132 italilAihkqnyeivklLlekgasve 158
                  +t+l +A + +  eiv+  l   a ++
  MMETSP1061-20121228|17066_1 328 HTPLSIACMYNLPEIVNFILSTDAGLS 354
                  79*******999999999999888776 PP

  == domain 3    score: 19.8 bits;  conditional E-value: 8.8e-09
    TIGR00870 126 seftkgitalilAihkqnyeivklLlekgas 156
                   + ++g+t+l++A  + n ++v+lLl++ga+
  MMETSP1061-20121228|17066_1 451 AQNSVGQTPLHIACSRGNWNVVRLLLKNGAN 481
                  35689************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1049 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.37
# Mc/sec: 3742.07
//
Query:       MMETSP1061-20121228|17069_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1495.88
//
Query:       MMETSP1061-20121228|17067_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.2e-104  345.0   0.0   9.2e-104  344.9   0.0    1.0  1  TIGR01141 hisC: histidinol-phosphate transaminase
    1.1e-54  183.6   0.0    1.4e-54  183.3   0.0    1.0  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    9.9e-29   98.2   0.0    1.3e-28   97.9   0.0    1.0  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    1.4e-25   87.8   0.0    1.6e-25   87.6   0.0    1.1  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    1.9e-22   77.5   0.0    2.4e-22   77.2   0.0    1.0  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    1.1e-21   75.1   0.1    1.7e-21   74.5   0.1    1.2  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    2.6e-19   67.3   0.0    3.5e-19   66.9   0.0    1.1  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    1.5e-17   61.4   0.0    1.9e-17   61.0   0.0    1.1  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    2.5e-15   54.0   0.1    3.4e-15   53.6   0.1    1.3  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    1.1e-12   45.4   0.1    2.2e-12   44.4   0.0    1.4  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    6.9e-09   32.9   0.0    9.2e-09   32.5   0.0    1.1  1  TIGR01822 2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
    3.9e-07   26.7   0.0    6.3e-07   26.0   0.0    1.2  1  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase
    7.6e-06   22.7   0.0    9.9e-06   22.3   0.0    1.1  1  TIGR00858 bioF: 8-amino-7-oxononanoate synthase
    0.00024   17.7   0.0    0.00036   17.2   0.0    1.2  1  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
    0.00027   17.7   0.0    0.00038   17.3   0.0    1.1  1  TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase
    0.00095   15.9   0.0     0.0025   14.6   0.0    1.7  2  TIGR01979 sufS: cysteine desulfurase, SufS family
     0.0019   14.9   0.1     0.0023   14.7   0.0    1.1  1  TIGR01328 met_gam_lyase: methionine gamma-lyase
     0.0021   14.6   0.0     0.0032   14.0   0.0    1.2  1  TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
     0.0061   13.6   0.0      0.033   11.2   0.0    1.9  2  TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
  ------ inclusion threshold ------
      0.029   10.9   0.0      0.036   10.6   0.0    1.3  1  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
      0.034   10.6   0.0      0.039   10.4   0.0    1.2  1  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase


Domain annotation for each model (and alignments):
>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.9   0.0  4.7e-106  9.2e-104       1     347 [.      12     369 ..      12     371 .. 0.93

  Alignments for each domain:
  == domain 1    score: 344.9 bits;  conditional E-value: 4.7e-106
    TIGR01141   1 rekikklepYqpgarelgekevvkLnsnEnPfgpse..kvkealkeelkklhrYpdpqalelkealakylg..veeenillgnGsdelielliraflepg...davlvleptysmYevsakiagaevkevplkedgqedleavleaakekvklvflasPnnPtGnllkreeiekvleev.e.dalVVvDeAYieFsee.asvlellaeypnlvvlrTlSKafgLAglRvGyaianaeiiealekvrapynvsslaleaavaalrdsdkiektveevkkererlleelkkleg..levyeSkaNFvlikvke..daeelleallekgiivRdlksaeglleeclRitvGtreenerllealk 347
                  r++i +l+pY++ ar++  +  v L++nEn+fgp+   +  ++  ++ ++l+rYpdp +++lke   ++ g  + ++n+++g+Gsde+i++l+r f++pg   d++l+++pty mY+v+ak++++e++++pl+ d+  d +++lea++ek+kl f++sP nPt + +  ++ie+++ ++ +  +l+VvDeAYi+F+++ as+++ll++y+n+vvl+TlSKafgLAg+R+G+ i+ +++i+ ++ v+apynv+sl++e+a++a+++ d+++k+v++  +er+ +  +l+ l++  ++vy+S+ NF+l++vk   +a+++++++ + g++ R  ++   ++++c+R+t+Gt+eene++l+ ++
  MMETSP1061-20121228|17067_1  12 RPNILELQPYRC-ARDDYSD-GVLLDANENAFGPTSlpTNSQDPYDNSNTLERYPDPYQSKLKELFCRERGndIVPANVFVGVGSDEAIDMLMRVFCTPGaggDNILITPPTYGMYKVCAKVNDVEIVSAPLTPDFDLDIPKTLEAVTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTeKyPGLIVVDEAYIDFAGDdASAISLLKKYNNIVVLQTLSKAFGLAGIRCGFCIGPPDVIQLMNNVKAPYNVNSLTSEVAINAMNSMDTLRKNVQSTLEERANVRVALESLTEivVKVYPSDSNFLLFRVKDdlKANDVYKRMADTGVVTRFRGNEL-HCNQCIRVTIGTPEENEKFLALFQ 369
                  7899********.6777775.9************941133344444556*******************9998999************************87789***************************************************************************7789*************9989********************************************************************************9988777766652267**************9999*******************997.58******************9886 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.3   0.0   7.1e-57   1.4e-54      32     328 ..      47     366 ..      26     369 .. 0.90

  Alignments for each domain:
  == domain 1    score: 183.3 bits;  conditional E-value: 7.1e-57
    TIGR01140  32 p...evleislealaryPdeeadelreaaaayygld..aesvlavnGaqeaiqllprl.....lapkrvlvlaptyseyaralraagaevvels........dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpae.slaalaealpglvVlrSltKffglaGlRlGfvvAepallerlkealgpWsvngpAqavgeaaladeawqkatrarlaaererlaallaalgll..evvggtalFllvrtedaa...alkeaLarrgilvRdfenfegldprllRvavrteeenerLle 328
                  p   + +  + ++l+ryPd+  ++l+e  ++  g d  +++v ++ G+ eai +l+r+     ++  + l+  pty+ y+  ++ +++e+v+ +         +++l+a +e+++ll+++ P NPt ++++ ++++++a++ ++  gl+vvDEA+idf  ++ s+++l ++++++vVl+ l K fglaG+R+Gf++++p++++ +++++ p +vn ++ +v+ +a++  +  +++ +   +er++++ +l++l  +  +v++++++Fll+r++d     ++++++a+ g+++R   n e   ++++Rv + t eene++l+
  MMETSP1061-20121228|17067_1  47 PtnsQDPYDNSNTLERYPDPYQSKLKELFCRERGNDivPANVFVGVGSDEAIDMLMRVfctpgAGGDNILITPPTYGMYKVCAKVNDVEIVSAPltpdfdldIPKTLEAVTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEKYPGLIVVDEAYIDFAGDDaSAISLLKKYNNIVVLQTLSKAFGLAGIRCGFCIGPPDVIQLMNNVKAPYNVNSLTSEVAINAMNSMDTLRKNVQSTLEERANVRVALESLTEIvvKVYPSDSNFLLFRVKDDLkanDVYKRMADTGVVTRFRGN-ELHCNQCIRVTIGTPEENEKFLA 366
                  3444556678899********************99999********************87775556667999********************9999*99996556666666*************************************************99999999999****************************************************************************9999988641167************9988888**************9999.44457789**********98876 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.9   0.0   6.5e-31   1.3e-28      90     348 ..      85     338 ..      59     363 .. 0.84

  Alignments for each domain:
  == domain 1    score: 97.9 bits;  conditional E-value: 6.5e-31
    TIGR03540  90 petevlsliGskeGiahlplafvnp...GdivlvpdPgyPvykistllaggepyelPlkeendflPdldaipedvlkkakilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfdeykalsflevdgakdvaielhslsktynmtGWrigfavGnkeliaalgkvksnvdsGvfqaiqeaaiaaleeeeevvkelrkvykkrrdl..lvealkkiGldvkkpkatfylWvkvPeGytsaefakklleeagvvv 348
                  p  +v   +Gs e i  l+  f  p   Gd +l++ P+y +yk+ +++ + e  + Pl+ +  f  d+ +  e v++k+k+lf+  P nPt+  ++ + ++++ + +++y  ++v d+ay + + d+ +a+s+l+  +  ++ + l++lsk++ ++G r gf +G  ++i+ +++vk   +    +   e+ai+a+++ +++ k++++  ++r ++   +e+l +i ++v  +++ f l  +v + +++ +  k++ + +gvv 
  MMETSP1061-20121228|17067_1  85 PA-NVFVGVGSDEAIDMLMRVFCTPgagGDNILITPPTYGMYKVCAKVNDVEIVSAPLTPD--FDLDIPKTLEAVTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEKYPGLIVVDEAYIDFAGDDASAISLLKKYN--NI-VVLQTLSKAFGLAGIRCGFCIGPPDVIQLMNNVKAPYNVN--SLTSEVAINAMNSMDTLRKNVQSTLEERANVrvALESLTEIVVKVYPSDSNFLL-FRVKDDLKANDVYKRMAD-TGVVT 338
                  54.566779*************9984446*****************************986..5569999999************************************************************98654..44.569*******************************866543..345699**********************986225799********988888766.689999999999998765.55543 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.6   0.0   8.4e-28   1.6e-25      69     280 ..      85     297 ..      68     364 .. 0.81

  Alignments for each domain:
  == domain 1    score: 87.6 bits;  conditional E-value: 8.4e-28
    TIGR03947  69 aekvlvthGsseaiylvltallrP...GdevvvvdpayhslselavalgakvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvydaeplpepsaaadrvisfgtlskafGlpGlrvGWcvaPkdllaelvrlrdyltlslsPlvellaevavehadalieprla..earanrrrlld 280
                  + +v+v +Gs eai + + +   P   Gd+++++ p+y   +  a+  ++++ + pl+   df  d+++  + vt++t+l+ +  P nPt  ++   + +++   +++    ++ d+a+ d++ d  +     ++++  +   tlskafGl+G+r G+c++P d++  + +++      +  l+  +a +a+++ d+l +  ++  e ran r +l+
  MMETSP1061-20121228|17067_1  85 PANVFVGVGSDEAIDMLMRVFCTPgagGDNILITPPTYGMYKVCAKVNDVEIVSAPLT--PDFDLDIPKTLEAVTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEKYPGLIVVDEAYIDFAGDDASAISLLKKYNNIVVLQTLSKAFGLAGIRCGFCIGPPDVIQLMNNVKA--PYNVNSLTSEVAINAMNSMDTLRKNVQStlEERANVRVALE 297
                  5789*******************95545*****************************9..68888999888999***************************************************9999999*************************************99986..45788999999999999999985432211134445444444 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.2   0.0   1.2e-24   2.4e-22      61     333 ..      86     355 ..      70     371 .. 0.86

  Alignments for each domain:
  == domain 1    score: 77.2 bits;  conditional E-value: 1.2e-24
    TIGR03537  61 aevlpsaGskeaifhlplafldpeeerkkviygtpgypvyerGalfaggealkvklkkedgflleldaveeailretkivwinyphnptGaeapasylkevaelareygiilasdecyaeiyseekpasvlevglenvlafhslskrsGmtGyrsgflaGdeelvsalrklrasvGvaspefvqaaataawsddahvaerrkifkrkrdl..fleflakkGlealasdatfylwvkvpegidaksyalrlleeGivvapGeafgageeeyvrval 333
                  a+v+   Gs eai  l  +f  p     +++++ p+y +y++ a+  + e ++  l++  +f l++ +  ea+ ++tk+++i  p npt    p s ++++a  + +y  +++ de y +   +++ a  l  + +n++++++lsk  G++G r gf  G +++++ +++++a   v s +  + a +a  s d   ++ + +++++ ++   le l++  +++ +sd+ f l  +v +  +a++  +r+ + G+v     +  +  ++ +rv++
  MMETSP1061-20121228|17067_1  86 ANVFVGVGSDEAIDMLMRVFCTPGAGGDNILITPPTYGMYKVCAKVNDVEIVSAPLTP--DFDLDIPKTLEAVTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEKYPGLIVVDEAYIDFAGDDASAISLLKKYNNIVVLQTLSKAFGLAGIRCGFCIGPPDVIQLMNNVKAPYNVNSLTS-EVAINAMNSMDTLRKNVQSTLEERANVrvALESLTEIVVKVYPSDSNFLL-FRVKDDLKANDVYKRMADTGVVTRFRGNELHC-NQCIRVTI 355
                  6788999*************************************************97..5999**9*99**************************************9999**********999988888889*******************************************99764.56677777888888888999999887611567788888888888888766.5888999999999*******998653333333.56777765 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.1   8.8e-24   1.7e-21      88     386 ..      77     360 ..      65     365 .. 0.79

  Alignments for each domain:
  == domain 1    score: 74.5 bits;  conditional E-value: 8.8e-24
    TIGR01265  88 keleakleaddvvltsGcsqaielviealana...ganiLvPrPgfplYetlakalglevrkydllpekdweidldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgdatfvplaklaskvPvlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAlpdilektpkeffekkikvlke..naelvyeelkeipgltcvkPegamyllvklelelleeikdDvdFceklvkEesvillPgsalelenylRitltveks 386
                  +e  +++ + +v++  G+ +ai++++++ +++   g+niL+  P++ +Y+  ak++++e+    l p+ d   d+ +  + + ekt++l +  P+nP+      + +e+++  +ek+  li+ DE Y +++ +da   +++ l++   +++l+++sk +   G r G+ i   p ++++   ++ +k+  ++    + ++ +A++++     +   +++ ++l+e  n+ ++ e+l+ei  ++ v P+ + +ll +++ +l     +D    +++++   v+   g+ l+ +  +R+t++++++
  MMETSP1061-20121228|17067_1  77 RERGNDIVPANVFVGVGSDEAIDMLMRVFCTPgagGDNILITPPTYGMYKVCAKVNDVEIVSAPLTPDFDL--DIPKTLEAVTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEKYPGLIVVDEAYIDFAGDDAS--AISLLKKYNNIVVLQTLSKAFGLAGIRCGFCIG--PPDVIQL--MNNVKAPYNVNSLTSEVAINAMNSM-----DTLRKNVQSTLEEraNVRVALESLTEI--VVKVYPSDSNFLLFRVKDDLKA---ND--VYKRMADTGVVTRFRGNELHCNQCIRVTIGTPEE 360
                  56678899**********************8723357******************************8665..55555555679*******************************************998777776..55668888999******************9885..5555554..4556665555555555666666543.....233344555555500555666666665..56777********999865544...55..5799999999999999999999999999999876 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.9   0.0   1.8e-21   3.5e-19      76     347 ..      81     360 ..      67     366 .. 0.75

  Alignments for each domain:
  == domain 1    score: 66.9 bits;  conditional E-value: 1.8e-21
    TIGR03539  76 kgldeeavlPviGtkelvallPtllGl..gagdtvviPevayPtyevgarlagaeavaa........ddlteldp..ekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWege.avsvldpevcggdlegllavhslskrsnlagyragfvaGdealvaellevrkhaGlmvpaPvqaamvaaladdehvaeqkeryaarrellkaa...lekaGfriehseaglylWatrge.daretvdrlaelGilvaPGdfyge..agkefvrvaltatde 347
                  + + +++v+  +G+ e++ +l +++      gd+++i   +y  y+v a++   e+v+a        d ++ l+   ek+kl+++ sP+nPt + + + +++++ + + +   +++ de y++++ ++  a+s+l+      ++++++ + +lsk   lag r gf  G +++++ + +v+      v   + +    a++  +  ++  +   + r++++ a   l++   ++  s++ + l+  +++ +a +  +r+a++G+++    f g+  + ++ +rv++ + +e
  MMETSP1061-20121228|17067_1  81 NDIVPANVFVGVGSDEAIDMLMRVFCTpgAGGDNILITPPTYGMYKVCAKVNDVEIVSApltpdfdlDIPKTLEAvtEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEKYPGLIVVDEAYIDFAGDDAsAISLLK------KYNNIVVLQTLSKAFGLAGIRCGFCIGPPDVIQLMNNVKAP--YNVNSLTSEVAINAMNSMDTLRKNVQSTLEERANVRVAlesLTEIVVKVYPSDSNFLLFRVKDDlKANDVYKRMADTGVVT---RFRGNelHCNQCIRVTIGTPEE 360
                  44668999999********999877542134789999999**************99976333322224455555466899*****************************999999*********887654899996......5899****************************988777643..333333333334445555555555555555556666550115567899999*********99997899999********96...4666522456788888766655 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   9.8e-20   1.9e-17      93     352 ..      87     334 ..      54     355 .. 0.75

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 9.8e-20
    TIGR03538  93 qvlPvnGtrealfafvqavidrae.kalvvlPnPfyqiyeGaallagaepyflnctaengfkpdfdavpeevWkrvqllfvcsPgnPtGavlsleelkklleladkydfiiasdecyselyldeaeaPvGlleaaaelGrddfkrllvfhslskrsnvPGlrsGfvaGdaellkeflryrt.yhGcampiavqlasiaaWedekhvrenraly...rekfaavleilgavldlelPdasfylWlkvpdgddeafaralyeeenvk 352
                  +v+   G+ ea+  ++++   +      +++  P y +y   a + + e++  + t   +f  d     e v ++++llf+csPgnPt + ++l +++++ + ++ky  +i  de y ++  d+a +       a++l  +++++++v+++lsk   + G+r Gf  G  ++++   + ++ y+  +++ +v   +i a +    +r+n ++    r+  + +le l++++    P+ s +l  +v   +d+  a+++y++ + +
  MMETSP1061-20121228|17067_1  87 NVFVGVGSDEAIDMLMRVFCTPGAgGDNILITPPTYGMYKVCAKVNDVEIVSAPLT--PDFDLDIPKTLEAVTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEKYPGLIVVDEAYIDFAGDDA-S-------AISLL-KKYNNIVVLQTLSKAFGLAGIRCGFCIGPPDVIQLMNNVKApYNVNSLTSEV---AINAMNSMDTLRKNVQSTleeRANVRVALESLTEIVVKVYPSDSNFLLFRV---KDDLKANDVYKRMADT 334
                  455557999999999998888876556677777************99999888875..568899999999************************************************9999887.3.......33443.479******************************9998887636555555554...455555555555554444000444444555555555445677777777777...3344455555544444 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.1   1.8e-17   3.4e-15      91     255 ..      79     242 ..      67     361 .. 0.87

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 1.8e-17
    TIGR01264  91 adgeleaddvvlasGcshalelaiealada...GenvlvPrPGfplyetlakaldievklynlladedweidlkelesliddktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkgatflalaslssevPilslgGlakrllvPGWrlGWli 255
                    + ++  +v +  G+ +a+++ + + + +   G+n+l+  P + +y+  ak  d+e+    l +d d  +d+ +  + + +ktk+l +  P+nP+      + +e++ + +e++   i+ de y d+  +     a++ l+    i++l+ l+k + + G r G+ i
  MMETSP1061-20121228|17067_1  79 RGNDIVPANVFVGVGSDEAIDMLMRVFCTPgagGDNILITPPTYGMYKVCAKVNDVEIVSAPLTPDFD--LDIPKTLEAVTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEKYPGLIVVDEAYIDFAGD--DASAISLLKKYNNIVVLQTLSKAFGLAGIRCGFCI 242
                  56788999********************8733369************************999999865..566666677889*******************************************996655..55678889999999******************988 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   1.1e-14   2.2e-12      91     361 ..      81     334 ..      56     345 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 1.1e-14
    TIGR03542  91 gridpeeifisdGakcdvarllelfgs....dktvavqdPvyPvyvdsavlaGragvldddgkykkivylpctkenef.iPelpe..ekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslPksiyeiegakecaieirsfsktlGftGvrlgytvvPkelkvedgeslkklWerllctkfnGaslivqraaeavlakeglqqikeaisyymenarilrkaleaaglkvyGGenaPylWvklpegissedffdkllke 361
                  + i p ++f+  G+   +  l+ +f +     +++ ++ P+y +y   a+++             +iv  p t + ++ iP+  e  ++k++++++CsP nPt  ++  ++++++   +++   li+ d ay  f  d++   s+    +     + ++++sk+ G++G+r+g+ + P ++         +l +  + + +n  sl    a +a+ +   l+++ ++    + n r+  ++l++   kvy  + + +l +++++ ++  d++ ++  +
  MMETSP1061-20121228|17067_1  81 NDIVPANVFVGVGSDEAIDMLMRVFCTpgagGDNILITPPTYGMYKVCAKVNDV-----------EIVSAPLTPDFDLdIPKTLEavTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEKYPGLIVVDEAYIDFAGDDASAISLLK--KYN-NIVVLQTLSKAFGLAGIRCGFCIGPPDVI--------QLMNN-VKAPYNVNSLTSEVAINAMNSMDTLRKNVQSTLEERANVRVALESLTEIVVKVYPSD-SNFLLFRVKDDLKANDVYKRMADT 334
                  3488999********999999999965333368999*********999988877...........89999998886654676543224679************************************************97766654..433.345699*******************9987........33333.3457899999999999999999999999999999999999*9************865.678999999999999999887655 PP

>> TIGR01822  2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   4.7e-11   9.2e-09     186     347 ..     178     337 ..     146     371 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 4.7e-11
    TIGR01822 186 iapldeicalaekydalvlvdechatGflGatGrGsaelldvldkvdiitgtlGkalG..GasGGfttakkevvellrqrsrpylfsnslapavvgasikvlelleasnelrdklventryfrekleaaGfdvkpaehaiipvmlydaklaqklaerlleeGiy 347
                  ++++++i++ +eky  l++vde++ + f G+     + ll  ++++ ++  tl ka+G  G   Gf  ++ +v++l+ +   py   nsl+ +v   +++ ++ l++  +   +  +n+r   e l+ +  +v p+++      + d  +a+++ +r+ + G+ 
  MMETSP1061-20121228|17067_1 178 LSDIEQIASNTEKYPGLIVVDEAY-IDFAGDDASAIS-LLKKYNNIVVL-QTLSKAFGlaGIRCGFCIGPPDVIQLMNNVKAPYN-VNSLTSEVAINAMNSMDTLRKNVQSTLEERANVRVALESLTEIVVKVYPSDSNFLLFRVKDDLKANDVYKRMADTGVV 337
                  67788999999***********98.689999887665.66667887655.69***998557799********************7.69*****************99887777778999*******************************************84 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   3.2e-09   6.3e-07     239     321 ..     158     240 ..     143     254 .. 0.84

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 3.2e-09
    TIGR03801 239 pkikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvygtfvddfrsllaelp.antilv.ysfskyfgatGWrlgv 321
                  +k k lf+  P nP+  ai  + ie++a+  e+  p L i+ D+ y  f+ d  s ++ l  +n i+v  + sk fg +G r g 
  MMETSP1061-20121228|17067_1 158 EKTKLLFICSPGNPTCKAIPLSDIEQIASNTEK-YPGL-IVVDEAYIDFAGDDASAISLLKkYNNIVVlQTLSKAFGLAGIRCGF 240
                  5789***********************987666.5665.677**********99999988635655551789**********985 PP

>> TIGR00858  bioF: 8-amino-7-oxononanoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     5e-08   9.9e-06     168     328 ..     179     337 ..     174     370 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 5e-08
    TIGR00858 168 aplkelvalaeryealllvDdAHgtGvlGedGrGlleefglkkeevdilvgTlsKalgslG...avvvgsealidyLlnrartfifsTalpPavvaaalaaleliqeeperreklakliarlrkeleklgfelkesetpivplligeeeealalaeelqeegil 328
                   +++++++ +e+y  l++vD+A  +   G+d     +   lkk ++++++ TlsKa+g +G   ++ +g   +i+++ n  +++  + +l   v+  a ++++ ++++ + + + +++++   ++l ++ +++ +s++  + + + ++ +a  + +++ + g++
  MMETSP1061-20121228|17067_1 179 SDIEQIASNTEKYPGLIVVDEAY-IDFAGDD---ASAISLLKKYNNIVVLQTLSKAFGLAGircGFCIGPPDVIQLMNNVKAPYNVN-SLTSEVAINAMNSMDTLRKNVQSTLEERANVRVALESLTEIVVKVYPSDSNFLLFRVKDDLKANDVYKRMADTGVV 337
                  46667777778999********8.5566664...34444455667899***********998889**********999999999765.67777777788899****999999999999999999999999************9999999999999999999875 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.8e-06   0.00036      89     176 ..     112     202 ..      71     208 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.8e-06
    TIGR02080  89 pddllvaPhdcyGGtyrllkalakkgklkvqlvdqsdee..alekalaekpklvlietPsnPllrvv...diaklcklakaagavvvvdntfl 176
                   d++l++P   y G y++  + ++ + +   l+   d +     +a++ek+kl++i +P nP  + +   di+++++ +++   ++vvd++++
  MMETSP1061-20121228|17067_1 112 GDNILITPP-TY-GMYKVCAKVNDVEIVSAPLTPDFDLDipKTLEAVTEKTKLLFICSPGNPTCKAIplsDIEQIASNTEKYPGLIVVDEAYI 202
                  456666664.45.578888888888888877777665541156789****************987543339******999999******9987 PP

>> TIGR01821  5aminolev_synth: 5-aminolevulinic acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.9e-06   0.00038     193     343 ..     178     327 ..     165     336 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.9e-06
    TIGR01821 193 iapikeicdladkygaltyldevhavGlyGprGaGiaerdgvmdridiieGtlakafGvlG...GyiaasaklidavrslapgfifttslpPavaagalasirhlkesqklreaqqekvkklkklleelglPvlkneshivPvliGdaakakkv 343
                  +++i++i   ++ky  l  +de + + + G+  + i+  +   ++i ++  tl+kafG  G   G+  +  ++i ++  + + +    sl+  va  a++s+  l+++ +   +++ +v+   ++l+e+ + v +++s  +   + d  ka+ v
  MMETSP1061-20121228|17067_1 178 LSDIEQIASNTEKYPGLIVVDEAY-IDFAGDDASAISLLKKY-NNIVVL-QTLSKAFGLAGircGFCIGPPDVIQLMNNVKAPYN-VNSLTSEVAINAMNSMDTLRKNVQSTLEERANVRVALESLTEIVVKVYPSDSNFLLFRVKDDLKANDV 327
                  6899******************87.7999*******988775.556566.59******9987779***********999988875.579*******************99999999999999999**********9999999999888887765 PP

>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.3e-05    0.0025     125     197 ..     125     200 ..      77     232 .. 0.81
   2 ?   -1.9   0.0       1.3   2.5e+02     304     364 ..     292     350 ..     255     367 .. 0.57

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.3e-05
    TIGR01979 125 wqllakrkgaklkvieldedgtldleeleelltektklvaithvsNvlGtvnpveeiiklahevg...alvlvDga 197
                  ++  ak +++++   +l++d  ld+ +  e +tektkl+ i   +N +    p+++i ++a +++    l++vD a
  MMETSP1061-20121228|17067_1 125 YKVCAKVNDVEIVSAPLTPDFDLDIPKTLEAVTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEkypGLIVVDEA 200
                  778889999*****************************************99998888887765511156777765 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.3
    TIGR01979 304 tayalerleeidglriygpkeeeeragiisfnve.gvhahDvatlldeeGiavRs.Gh..hCaqP 364
                  +++ale l+ei  +++y + +       + f v+ +++a Dv + + ++G+  R  G+  hC q 
  MMETSP1061-20121228|17067_1 292 VRVALESLTEI-VVKVYPSDS-----NFLLFRVKdDLKANDVYKRMADTGVVTRFrGNelHCNQC 350
                  33444444444.345554333.....355566642577777777777777777742333366665 PP

>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.2e-05    0.0023     130     287 ..     146     309 ..     108     341 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.2e-05
    TIGR01328 130 dmaspeevkaaikdntkivyfetpanptlklidleavvrvakekg...vkvivdntfatplltrpvalG.....vdvvvhsatkyigGhgdvvaGvliGdaellqrirlvgvkdltGavispfdaflvlrGlktlavrmkresenaekvaeklkehpavekvlypG 287
                  d+++p+++  a+ ++tk++++ +p npt k i l  + ++a + +    +++vd+++      +  a+       ++vv  +     G + + +G  iG  + +q++  v       ++ s   a   +  + tl   ++   e+  +v   l++  ++    yp 
  MMETSP1061-20121228|17067_1 146 DLDIPKTLE-AVTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEkypGLIVVDEAYIDFAGDDASAISllkkyNNIVVLQTLSKAFGLAGIRCGFCIGPPDVIQLMNNVKAPYNVNSLTS-EVAINAMNSMDTLRKNVQSTLEERANVRVALESLTEIVVKVYPS 309
                  667777765.6899****************9988888888877664447899***997654443322221111145666666555666667777777777777777666655443333333.34455555556665555555555555555555555555555555 PP

>> TIGR01329  cysta_beta_ly_E: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.6e-05    0.0032      71     173 ..      94     200 ..      39     204 .. 0.69

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.6e-05
    TIGR01329  71 Gmaaldvivrll....kagdeiiagddlyGGtdrlltqlksksgvvvvhvdttdlekvkavlgdlpktklvllesPtnPlikivdirkiaeaakalne.dalvvvdnt 173
                     a+d+++r++     +gd+i+ +   yG + ++ + +++   v +   +  dl+  k+    ++ktkl+++ sP nP +k + ++ i ++a  +++   l+vvd++
  MMETSP1061-20121228|17067_1  94 SDEAIDMLMRVFctpgAGGDNILITPPTYG-MYKVCAKVNDVEIVSAPLTPDFDLDIPKTLEAVTEKTKLLFICSPGNPTCKAIPLSDIEQIASNTEKyPGLIVVDEA 200
                  345777777765322246789999999996.67788888777766677778888888888777789***************976555555555443321367888875 PP

>> TIGR03392  FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00017     0.033      80     195 ..      87     200 ..      27     213 .. 0.78
   2 ?   -0.1   0.0      0.44        86     321     364 ..     309     356 ..     259     360 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00017
    TIGR03392  80 nivwtrGtteslnlvaqsyarprlqpedeiivseaehhanlipwlmvaeqtGakvvklplgadklpdiellpelltkktrllalsqmsnvtGGap...dlariialahkagavvvvdGa 195
                  n+    G+ e+++++++ +  p    +d+i+++   +      + + a+    ++v  pl++d   di +  e +t+kt+ll +    n t  a    d+++i + ++k+  ++vvd a
  MMETSP1061-20121228|17067_1  87 NVFVGVGSDEAIDMLMRVFCTPGA-GGDNILITPPTYGM----YKVCAKVNDVEIVSAPLTPDFDLDIPKTLEAVTEKTKLLFICSPGNPTCKAIplsDIEQIASNTEKYPGLIVVDEA 200
                  555667899999999999999975.68888888776654....5567999999**************************************9876112555666666778889999987 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.44
    TIGR03392 321 aessllafdf.advhhsdlvallaesgialr...aGqhcaqpllaalG 364
                  ++s++l f + +d++ +d+ + +a++g+  r      hc q +  ++G
  MMETSP1061-20121228|17067_1 309 SDSNFLLFRVkDDLKANDVYKRMADTGVVTRfrgNELHCNQCIRVTIG 356
                  46777777762679999**********998842223599998766665 PP

>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00018     0.036     127     179 ..     145     199 ..      69     242 .. 0.69

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00018
    TIGR01326 127 vdkddleelekaidentkavfletignPkldvlDiekvaeva...kkagvplivDn 179
                  +d d +++l +a+ e+tk +f+ + gnP+++ + ++ + ++a   +k    ++vD 
  MMETSP1061-20121228|17067_1 145 FDLDIPKTL-EAVTEKTKLLFICSPGNPTCKAIPLSDIEQIAsntEKYPGLIVVDE 199
                  344445555.56889*************9886655555555500044444456665 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0    0.0002     0.039     129     180 ..     149     203 ..     105     308 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.0002
    TIGR01325 129 lkaWeaalkantkllfletPsnPlae...lvdiaalaelahavGaklvvdnvfat 180
                  + +   a+  +tkllf+ +P nP  +   l di+ +a  +     ++vvd++++ 
  MMETSP1061-20121228|17067_1 149 IPKTLEAVTEKTKLLFICSPGNPTCKaipLSDIEQIASNTEKYPGLIVVDEAYID 203
                  5555579999*************97633367888888888888899999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        21  (0.00511945); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.37u 0.15s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 1393.22
//
Query:       MMETSP1061-20121228|17068_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 3025.19
//
Query:       MMETSP1061-20121228|17070_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.17s 00:00:00.62 Elapsed: 00:00:00.40
# Mc/sec: 844.73
//
Query:       MMETSP1061-20121228|17071_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-41  137.8   0.0    1.4e-40  137.1   0.0    1.3  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    1.5e-36  123.8   0.0    2.1e-36  123.3   0.0    1.2  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    3.3e-32  109.4   0.0    5.1e-32  108.8   0.0    1.2  1  TIGR01179 galE: UDP-glucose 4-epimerase
    4.1e-21   73.3   0.0    5.8e-21   72.8   0.0    1.2  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
      2e-17   61.2   0.0    4.2e-17   60.1   0.0    1.4  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
      2e-12   45.1   0.0    1.3e-05   22.7   0.0    2.2  2  TIGR01777 yfcH: TIGR01777 family protein
    1.6e-11   41.8   0.0    1.2e-09   35.7   0.0    2.2  2  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    3.9e-08   30.4   0.0    5.5e-07   26.6   0.0    2.1  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
    3.9e-08   30.6   0.0    1.2e-07   28.9   0.0    1.8  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    1.4e-05   22.0   0.0    5.6e-05   20.0   0.0    1.9  2  TIGR04130 FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
    7.4e-05   19.7   0.0    0.00027   17.8   0.0    1.9  2  TIGR03589 PseB: UDP-N-acetylglucosamine 4,6-dehydratase
    0.00023   18.3   0.1      0.014   12.4   0.1    2.2  2  TIGR01746 Thioester-redct: thioester reductase domain
     0.0038   14.3   0.0      0.006   13.7   0.0    1.2  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
  ------ inclusion threshold ------
      0.017   12.4   0.0      0.053   10.7   0.0    1.7  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
      0.022   12.0   0.0      0.035   11.3   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
      0.027   11.6   0.0      0.056   10.6   0.0    1.5  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
      0.032   11.3   0.0      0.053   10.6   0.0    1.3  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1   0.0     6e-43   1.4e-40       1     313 [.     148     451 ..     148     456 .. 0.91

  Alignments for each domain:
  == domain 1    score: 137.1 bits;  conditional E-value: 6e-43
    TIGR01181   1 klLvtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelkevrllhistDevyGdlekdd...aeftettplaPssPysaskaasdllvrayartyglpvlitrcsnnyGpyqfpe..kliPllitnalagkklpvyGdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldkdedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvkWyle 313
                  k+LvtGGaGf+Gs +v +++ e   +ev+v+D++ ++g+k+n+++  +++++s+   d+++  +v       +vd + ++a  +   +   +p + i+t  +Gt  +l  +++   + r+l  st e+yGd + +        + +p+ P+s y   k  +++++ +y+   +++v+++r  n +Gp  +p+  +++  +i++al+ k+l+vyG+G+q r + yv+D +++++++++   +g   n+g   e t +e  + + ++l k+++ i++ +  + +  +   d s+ k+eLgw+p+vt+eegl +t+k++ +
  MMETSP1061-20121228|17071_1 148 KILVTGGAGFVGSHLVDKLMMEG--HEVTVVDNF-FTGQKKNVAHWMHHPNFSLKVHDVTEPLTV-------EVDEIYHLACPASPPHYQFNPVKTIKTSTMGTLNMLGLAKR--VKARILLTSTSEIYGDPQVHPqseGYWGNVNPIGPRSCYDEGKRVAETMMYSYKDQSEVDVRVARIFNTFGPRMHPNdgRVVSNFIIQALQEKPLTVYGEGEQTRSFQYVDDLVNGLHALMNGNYDGP-VNLGNPDEYTMKEFAQYV-KKLTKSKSEIRFLDKTQDDPSKRKPDISRAKQELGWQPRVTVEEGLGNTIKYFAK 451
                  69**************9999876..5799***97.899*****************9999876554.......578999*****9999999********************999..5899999********9654321125578899********************************************975579*************************************9887666665.59***********99876.77899********99999999999***************************9875 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  123.3   0.0   8.7e-39   2.1e-36       1     295 [.     149     435 ..     149     437 .. 0.84

  Alignments for each domain:
  == domain 1    score: 123.3 bits;  conditional E-value: 8.7e-39
    TIGR04180   1 vlvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvdvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvvhtstsevyGtaqyvPidekh.....plqaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsar..aviPtiitqilsgkkkiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigsnfeisigdtvkliaeilgkeveivt.deerlrPekseverlladnskikeltgwkpk 295
                  +lvtG  Gf+Gshlv++l+ +G+ev+ + ++ + +++   + +    + ++ + + d+ ++ +v     +vd ++hla+  + P+    p   ++t  +Gtln+l  a+ ++  +++ tstse+yG  q+ P +e +     p+ ++s y   k  a+++ +s+    e+ v ++r fnt+GPr       v+   i q l+ k     G+ + tr f+yv d v+g+ a+++ +      +n+g+  e ++++ ++ ++++ +++ ei   d+++  P+k        d s++k+ +gw+p+
  MMETSP1061-20121228|17071_1 149 ILVTGGAGFVGSHLVDKLMMEGHEVTVVDNFFTGQKKNVAHWM---HHPNFSLKVHDVTEPLTV-----EVDEIYHLACPASPPHYQFNPVKTIKTSTMGTLNMLGLAKRVK-ARILLTSTSEIYGDPQVHPQSEGYwgnvnPIGPRSCYDEGKRVAETMMYSYKDQSEVDVRVARIFNTFGPRMHPNdgRVVSNFIIQALQEKPLTVYGEGEQTRSFQYVDDLVNGLHALMNGNY--DGPVNLGNPDEYTMKEFAQYVKKLTKSKSEIRFlDKTQDDPSKR-----KPDISRAKQELGWQPR 435
                  79**********************9987776554443332222...255678888899988776.....69**************99********************99987.699*****************996433333999***************************************86532269999999******999**********************9988764..5679************************9997525555555543.....3566666666677665 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.8   0.0   2.1e-34   5.1e-32       1     314 [.     148     438 ..     148     453 .. 0.89

  Alignments for each domain:
  == domain 1    score: 108.8 bits;  conditional E-value: 2.1e-34
    TIGR01179   1 kiLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYgesekvpisEe.....splnpinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyddL 314
                  kiLvtGgaG++Gsh v +l+ +g+ev v+Dn  +g+k+ + +  +  +++l   d+++  ++       ++d + H+a  ++ +    +P+k  +  +++tl++l + ++++  +++  s++ +Yg+++  p sE       p++p + Y + k+++E ++  +k+  +e +v + R Fn++G  ++ + G+  +n       +++ a+ +++ l+++G+      G   R + +v+Dl ++    l+al++g+     nlG+   + +ke  + vkk++  + ++++ d+ + Dp++   d s++k+elgw+p+ + +
  MMETSP1061-20121228|17071_1 148 KILVTGGAGFVGSHLVDKLMMEGHEVTVVDNFFTGQKKNVAHWMHHPNFSLKVHDVTEPLTV-------EVDEIYHLACPASPPHYQFNPVKTIKTSTMGTLNMLGLAKRVK-ARILLTSTSEIYGDPQVHPQSEGywgnvNPIGPRSCYDEGKRVAETMMYSYKDQ-SEVDVRVARIFNTFGPRMHPNDGRVVSN------FIIQ-AL-QEKPLTVYGE------GEQTRSFQYVDDLVNG----LHALMNGNYDGPVNLGNPDEYTMKEFAQYVKKLTKSKSEIRFLDKTQDDPSKRKPDISRAKQELGWQPRVT-V 438
                  79**************************************9999888999999998887766.......69**********************************9888775.68999****************963322257789999***************888.9**************9998766654433......3333.44.5789*****7......666799*******776....8899999999**********************************************************987.4 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.8   0.0   2.4e-23   5.8e-21       1     310 [.     149     446 ..     149     452 .. 0.81

  Alignments for each domain:
  == domain 1    score: 72.8 bits;  conditional E-value: 2.4e-23
    TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrkgekllnlkdeeiadyidkeellerleke...elkkveavfHegAisd..TteldgellmenNyeyskellelcaekevkliYASSAavYGdseeefreekele......rPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkLFksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgkarsfndlaaavvkalgkdekieyidmPealrgkyqkfTqadleklreagykkeflsleegvkdYv 310
                  i+vTGgaGf+Gs lv +l  +g +++ vvD++ +g+k      +++a++++++++  ++++     + +v+ + H +  ++   ++++  + +++ +  ++++l l++  +++++  S   +YGd + + + e  +        P  +Y   K + ++++     k++++  v   r FN +Gpr +  ++   vv +++ q+ +ek + ++ +      Geq+R F yv+D v+    l++  +  G  n+G     + ++ a+ v+k ++++++i+++d  ++      +  + d++++++++  ++ +++eeg+ + +
  MMETSP1061-20121228|17071_1 149 ILVTGGAGFVGSHLVDKLMMEG-HEVTVVDNFFTGQK------KNVAHWMHHPNFSLKVHDVtepLTVEVDEIYHLACPASppHYQFNPVKTIKTSTMGTLNMLGLAKRVKARILLTSTSEIYGDPQVHPQSEG-YWgnvnpiGPRSCYDEGKRVAETMMYS--YKDQSEVDVRVARIFNTFGPRMH-PND-GRVVSNFIIQALQEKPLTVYGE------GEQTRSFQYVDDLVNGLHALMNG-NYDGPVNLGNPDEYTMKEFAQYVKKLTKSKSEIRFLDKTQDD----PSKRKPDISRAKQELGWQPRVTVEEGLGNTI 446
                  89*****************999.89*******99875......4567777777776665543323457999****98655522688999999********************************7554333322.112344559************999983..367777789999********964.443.4588999999999999988765......5566***********99999988.69**************************999*****987773....3446789999999999999999999876655 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   1.7e-19   4.2e-17       3     336 ..     145     455 ..     144     462 .. 0.72

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 1.7e-19
    TIGR02622   3 kgkkvlvtGhtGfkGsWlslwLkelGaevaGysldpetkpnlfellklakklkdssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkavvlvtsDkvYenk....ewvwgyretdalGGhDpYsaskaaaelvvasyrksflkeankekikiasaRaGnviGGGDwaed.RlvpDviralssnkaveiR.npkavrPWqhvLepLsGYlllaeklledeaelaeafnfGPea.eenkkvvelvkkalellagkkaeiekksdkeapheaklLkLdsdkakkklgwkprlsleeaveatveWykeaylk 336
                  + kk+lvtG  Gf Gs l+  L + G ev+      + +++++     + +   s  + d+++  +       v+ + ++hla  +   +   +P++t++t ++Gt+n+l  ++ ++ ++++ l  +  +Y +     ++  ++ + +++G    Y   k  ae ++ sy++       ++++ + +aR  n  G   + +d R+v + i  + ++k +++  + + +r +q+v + ++G       l+++  ++++  n+G  +  + k+  ++vkk+++     k+ei+   d ++  + +  k d+++ak++lgw+pr ++ee + +t++++ ++  +
  MMETSP1061-20121228|17071_1 145 RRKKILVTGGAGFVGSHLVDKLMMEGHEVTVVDNFFTGQKKNVAHWMHHPNF--SLKVHDVTEPLT-------VEVDEIYHLACPASPPHYQFNPVKTIKTSTMGTLNMLGLAKRVK-ARIL-LTSTSEIYGDPqvhpQSEGYWGNVNPIGPRSCYDEGKRVAETMMYSYKD-------QSEVDVRVARIFNTFGPRMHPNDgRVVSNFIIQALQEKPLTVYgEGEQTRSFQYVDDLVNGLH----ALMNG--NYDGPVNLGNPDeYTMKEFAQYVKKLTKS----KSEIRF-LD-KTQDDPSKRKPDISRAKQELGWQPRVTVEEGLGNTIKYFAKVLDE 455
                  679*************************987665554444433333333333..335556555443.......345669***997777766679*****************999887.3333.3345567866412222333456889*************99988777754.......45789999********999887669***98888888888888626799*************75....56666..678999**955503344444444444433....333332.22.22334455678***************************9976554 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0     3e-07   7.3e-05       1      39 [.     149     187 ..     149     254 .. 0.78
   2 !   22.7   0.0   5.5e-08   1.3e-05     188     242 ..     348     401 ..     332     408 .. 0.87

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 3e-07
    TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeek 39 
                  +l+tGg G++G++lv +l  +ghev+++    + +k+++
  MMETSP1061-20121228|17071_1 149 ILVTGGAGFVGSHLVDKLMMEGHEVTVVDNFFTGQKKNV 187
                  79************************9876544433333 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 5.5e-08
    TIGR01777 188 lGsGrqwlsWihleDlvklilfaleneevsGvvNataPepvrnkefakalakalh 242
                   G+G+q  s+  ++Dlv+ ++ +++  ++ G+vN+  P+  ++kefa+ + k  +
  MMETSP1061-20121228|17071_1 348 YGEGEQTRSFQYVDDLVNGLHALMN-GNYDGPVNLGNPDEYTMKEFAQYVKKLTK 401
                  69*****************976665.59*******************99887665 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0     5e-12   1.2e-09       2     266 ..     148     398 ..     147     421 .. 0.79
   2 ?    4.3   0.0     0.017       4.2     310     331 ..     421     442 ..     405     452 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 5e-12
    TIGR01472   2 valitGitGqdGsylaelllekgyevhGlirrsssfnterlehlyeekhkeekalflhyGdltdsssllklieeikpteiynlaaq.shvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqke.....ktpfnprspyaaaklyayyivvnyreayglfavnGilfnhesprrGetfvtrkitravakialgleeklylGnldakrdwGyakdyveamwlmlqqdkpddyviatgettsvrefvevsfe 266
                  + l+tG +G  Gs+l + l+ +g+ev  +     +f t + +++ +  h+ + +l++   d+t+  +       ++ +eiy la   s  +  f+ p  t+++ ++Gtl++l   + +    k r   +stse+yG+ +  pq+e       p  prs y   k +a  ++  y++  ++      +fn   pr   +   r +++ + +   ++      G+ +  r + y  d v+ ++ +++ +      +   + ++++ef ++  +
  MMETSP1061-20121228|17071_1 148 KILVTGGAGFVGSHLVDKLMMEGHEVTVV----DNFFTGQKKNVAHWMHHPNFSLKV--HDVTEPLT-------VEVDEIYHLACPaSPPHYQFN-PVKTIKTSTMGTLNMLGLAKRV----KARILLTSTSEIYGDPQVHPQSEgywgnVNPIGPRSCYDEGKRVAETMMYSYKDQSEVDVRVARIFNTFGPRMHPN-DGRVVSNFIIQALQEK-PLTVYGEGEQTRSFQYVDDLVNGLHALMNGNYDGPVNLGNPDEYTMKEFAQYVKK 398
                  6799999****************999765....689999999998888887555555..59998764.......6779*****986155566675.999*************877765....578899****************94444347*****************************99999***999987665.4677776665544433.3445699999999999999999999998888877777888888888888776544 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.017
    TIGR01472 310 Gdatkakeklgwkrevslkelv 331
                   d ++ak++lgw+++v+++e +
  MMETSP1061-20121228|17071_1 421 PDISRAKQELGWQPRVTVEEGL 442
                  6889*************99855 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.3e-09   5.5e-07       2     118 ..     148     265 ..     147     339 .. 0.80
   2 ?    1.8   0.0     0.082        20     295     323 ..     422     451 ..     363     453 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.3e-09
    TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvr.ktsdrrnleeldvEiveGdlkdeaslkkalkGcealfHvA..AdyrlwakdpeelykanvegtravleaAleagvervvytssvatlg 118
                  k lvtG++GFvGs++v +l+ eG+ev v+    t +++n+++      + +lk +++ +     ++ ++H+A  A    ++ +p + +k+   gt ++l  A++ +  r++ ts+  + g
  MMETSP1061-20121228|17071_1 148 KILVTGGAGFVGSHLVDKLMMEGHEVTVVDNfFTGQKKNVAHWMH-HPNFSLKVHDVTEPLTVEVDEIYHLAcpASPPHYQFNPVKTIKTSTMGTLNMLGLAKRVK-ARILLTSTSEIYG 265
                  78**************************98625778888877543.44556777777788888999****9944555689999****************9998876.5888899877766 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.082
    TIGR03466 295 ssakAereLgyrqr.paeealkdaveWfra 323
                  + ++A++eLg++ r  +ee+l + +++f +
  MMETSP1061-20121228|17071_1 422 DISRAKQELGWQPRvTVEEGLGNTIKYFAK 451
                  6689*******98736899*******9975 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0     5e-10   1.2e-07       1     229 [.     148     403 ..     148     428 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 5e-10
    TIGR01214   1 rilitGakgqlgreLveqlskegsevvaltrs...............qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvgallvhiSTDYvFDG.....ekkrpYreedetnPlnvYgqsKlaGEvavraasekali.vRtswlygasgg......rnFvktmlrlakereelkvva..dQigsPTyakdlaevlaallereargvyHlanegqvSwyefaqaifevleee 229
                  +il+tG++g +g++Lv++l  eg ev+++++                ++ l+  +  e l  e   d + + a      +   ++ k  +  +++t n+  +a+rv+a+++  ST  ++       + +  + + ++ +P + Y + K + E+++ ++ +++ + vR++ ++++ g       +  v++ +  a ++++l v    +Q+ s  y++dl + l al++ +  g   l n  +    efaq + +  + +
  MMETSP1061-20121228|17071_1 148 KILVTGGAGFVGSHLVDKLMMEGHEVTVVDNFftgqkknvahwmhhpNFSLKVHDVTEPLTVE--VDEIYHLACPASPPHYQFNPVKTIKTSTMGTLNMLGLAKRVKARILLTSTSEIYGDpqvhpQSEGYWGNVNPIGPRSCYDEGKRVAETMMYSYKDQSEVdVRVARIFNTFGPrmhpndGRVVSNFIIQALQEKPLTVYGegEQTRSFQYVDDLVNGLHALMNGNYDGPVNLGNPDEYTMKEFAQYVKKLTKSK 403
                  79********************99999999888999999999999886666666654454444..5899*************************************************966566645555567889999*********************87777*******9998777776666788888899999****996337******************************************988766554 PP

>> TIGR04130  FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   2.3e-07   5.6e-05       4     125 ..     146     260 ..     144     269 .. 0.76
   2 ?   -1.5   0.0      0.82     2e+02     168     241 ..     325     399 ..     292     407 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 2.3e-07
    TIGR04130   4 dkillitggtgsfgnavlrrfld..tdikeirifsrdekkqddmrkkynnkklkfyigdvrdyrsilnatrgvdfiyhaaalkqvpscefhpleavktnvlgtenvleaaianevkrvvclstd 125
                   k +l+tgg+g  g  ++ +++    +++ +  f   +kk+     ++ n  lk  + dv +       t  vd iyh a+    p  +f p++++kt  +gt n+l   +a++vk  + l++ 
  MMETSP1061-20121228|17071_1 146 RKKILVTGGAGFVGSHLVDKLMMegHEVTVVDNFFTGQKKNVAHWMHHPNFSLK--VHDVTEP-----LTVEVDEIYHLACPASPPHYQFNPVKTIKTSTMGTLNMLG--LAKRVKARILLTST 260
                  577899********9999887641246777777888888887777777777776..4566654.....3568**********************************96..56677644444433 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.82
    TIGR04130 168 masrgsviplfvdlikagkpltit.dpnmtrfmmtledavdlvlyafehgn.ngdifvqkapaatietlaialkel 241
                      g v+  f+      kplt+  + + tr +  ++d v+  l+a+  gn +g + + +    t++ +a  +k+l
  MMETSP1061-20121228|17071_1 325 HPNDGRVVSNFIIQALQEKPLTVYgEGEQTRSFQYVDDLVNG-LHALMNGNyDGPVNLGNPDEYTMKEFAQYVKKL 399
                  346688899998888889999985377899999999998874.677777763466666555566666666666665 PP

>> TIGR03589  PseB: UDP-N-acetylglucosamine 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       1.3   3.1e+02     157     178 ..       8      29 ..       2      44 .. 0.80
   2 !   17.8   0.0   1.1e-06   0.00027       4     121 ..     146     255 ..     143     264 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 1.3
    TIGR03589 157 ktrfsvvryGnvvGsrGsvvPf 178
                  +++   vr Gn   s+ sv+P 
  MMETSP1061-20121228|17071_1   8 QLHHRTVRDGNADASKQSVLPK 29 
                  4566789************995 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 1.1e-06
    TIGR03589   4 nksilitGgtGsfGkkfikkllek.ykvkkiiiysrdelkqfelqqkfeedklrffiGdvrdkerleraledvdlvvhaaalkqvpaaeynPleciktnieGaenvidaaldkgvkkvv 121
                   k il+tGg+G  G + ++kl+ + ++v  +  +  ++ k  ++++ ++++++   + dv +         +vd + h a     p  ++nP+ +ikt  +G+ n++   l+k vk  +
  MMETSP1061-20121228|17071_1 146 RKKILVTGGAGFVGSHLVDKLMMEgHEVTVVDNFFTGQKK--NVAHWMHHPNFSLKVHDVTEP-----LTVEVDEIYHLACPASPPHYQFNPVKTIKTSTMGTLNMLG--LAKRVKARI 255
                  689***************9987541566666666665544..445556667777777788643.....3468*********************************985..556666544 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   5.9e-05     0.014       1      28 [.     148     175 ..     148     177 .. 0.90
   2 ?    3.8   0.0     0.024       5.8     110     193 ..     235     317 ..     191     416 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.9e-05
    TIGR01746   1 tvlLTGAtGfLGaylleeLlrrsteakv 28 
                  ++l+TG  Gf+G +l+++L+ + +e +v
  MMETSP1061-20121228|17071_1 148 KILVTGGAGFVGSHLVDKLMMEGHEVTV 175
                  69******************99988776 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.024
    TIGR01746 110 aaNVegtvevlrlaasgkakpliyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdr.glpvtivRpG 193
                  ++  +gt ++l la + ka+ +   St   + + +++++  +    + +++g ++ Y + K vaE ++   +d+  ++v++ R+ 
  MMETSP1061-20121228|17071_1 235 KTSTMGTLNMLGLAKRVKAR-ILLTSTSEIYGDPQVHPQ-SEGYWGNVNPIGPRSCYDEGKRVAETMMYSYKDQsEVDVRVARIF 317
                  5566899999**********.778888888888777763.566677788999999***************999999999999975 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   2.5e-05     0.006       7      41 ..     148     182 ..     143     200 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2.5e-05
    TIGR03325   7 vvlvtggasglgralvdrfvaegarvavldksaag 41 
                   +lvtgga  +g  lvd+ + eg  v+v+d+   g
  MMETSP1061-20121228|17071_1 148 KILVTGGAGFVGSHLVDKLMMEGHEVTVVDNFFTG 182
                  689***************************86655 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00022     0.053     147     212 ..     144     214 ..     135     222 .. 0.79
   2 ?   -1.9   0.0       1.6   3.9e+02     251     284 ..     334     367 ..     329     373 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00022
    TIGR02817 147 gekralliiGaaGGvgsili.qlarqlteltvia...tasraesqewvkelG.ahavidhskplkaqlekl 212
                  ++ +++l++G+aG vgs l+ +l+ +  e+tv+    t+ + + ++w+++   + +v d ++pl+ +++++
  MMETSP1061-20121228|17071_1 144 HRRKKILVTGGAGFVGSHLVdKLMMEGHEVTVVDnffTGQKKNVAHWMHHPNfSLKVHDVTEPLTVEVDEI 214
                  56789************98835788888888885444999999****987551667889999999999876 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.6
    TIGR02817 251 eldvsklkrkslslhwelmftrslfktedlieqh 284
                  ++ ++ l++k l+++ e   trs    +dl++  
  MMETSP1061-20121228|17071_1 334 NFIIQALQEKPLTVYGEGEQTRSFQYVDDLVNGL 367
                  5668899999999999999999999999998753 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00015     0.035       3      42 ..     149     189 ..     147     209 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00015
    TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadln.eetaketak 42 
                   lvtG+a  +G+ ++ +L  +G +v+v+d     + k++a+
  MMETSP1061-20121228|17071_1 149 ILVTGGAGFVGSHLVDKLMMEGHEVTVVDNFfTGQKKNVAH 189
                  69*************************99653555555555 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00023     0.056       3      35 ..     146     178 ..     144     196 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00023
    TIGR03206   3 dkvaivtgggggiggaicrrfaeegakvavldl 35 
                   k ++vtgg+g +g+ +  ++  eg +v+v+d 
  MMETSP1061-20121228|17071_1 146 RKKILVTGGAGFVGSHLVDKLMMEGHEVTVVDN 178
                  68899*************************995 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00022     0.053       2      39 ..     147     184 ..     146     216 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00022
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaae 39 
                  k +lvtG a+ +g ++ ++l  +G++v+v+d    +++
  MMETSP1061-20121228|17071_1 147 KKILVTGGAGFVGSHLVDKLMMEGHEVTVVDNFFTGQK 184
                  789*************************9996533332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.36
# Mc/sec: 1726.86
//
Query:       MMETSP1061-20121228|17072_1  [L=921]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.8   0.0     0.0031   14.7   0.0    1.5  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
     0.0066   12.8   0.0      0.014   11.7   0.0    1.4  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.5e-06    0.0031      38      93 ..     515     573 ..     497     582 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.5e-06
    TIGR01934  38 ekeekvlDvatGt.Gdlaielakkae.akvtgvDlseemLevakkkakek.eeanvefi 93 
                  +++ +vlD+a+G  Gdl+ ++ +k++ ++ +g+D++   L+ a+++a+   ++++++  
  MMETSP1061-20121228|17072_1 515 KQPLRVLDLACGKgGDLTKWTIHKRGmRNYVGIDVARGSLKDAAERARGLrKKNKLTKA 573
                  47889*******725888777777778*******************9987666666554 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.7e-06     0.014     284     329 ..     518     564 ..     502     576 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.7e-06
    TIGR04074 284 rsvlDlGcGeg.kLlkaLlaekqfekivgvdvsareLekakrrlkld 329
                   +vlDl cG+g  L k  ++++ +++ vg+dv+  +L+ a++r +  
  MMETSP1061-20121228|17072_1 518 LRVLDLACGKGgDLTKWTIHKRGMRNYVGIDVARGSLKDAAERARGL 564
                  58*******863799999***********************997644 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (921 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.11s 00:00:00.51 Elapsed: 00:00:00.40
# Mc/sec: 3039.05
//
Query:       MMETSP1061-20121228|17074_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1170.69
//
Query:       MMETSP1061-20121228|17073_1  [L=1059]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1041.5   0.0          0 1041.2   0.0    1.0  1  TIGR00422 valS: valine--tRNA ligase
   1.9e-109  364.9   0.0    7.3e-73  243.9   0.0    2.5  2  TIGR00392 ileS: isoleucine--tRNA ligase
    9.6e-56  187.1   3.8      6e-27   91.8   0.0    4.0  4  TIGR00395 leuS_arch: leucine--tRNA ligase
    4.8e-47  158.4   4.5    6.5e-19   65.3   0.0    5.2  5  TIGR00396 leuS_bact: leucine--tRNA ligase
    1.3e-29  101.1   0.0    6.9e-13   46.0   0.0    3.8  3  TIGR00398 metG: methionine--tRNA ligase
     0.0002   18.4   0.0    0.00056   16.9   0.0    1.6  2  TIGR00435 cysS: cysteine--tRNA ligase
     0.0063   13.2   0.0      0.029   11.0   0.0    2.0  2  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase


Domain annotation for each model (and alignments):
>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1041.2   0.0         0         0       4     861 ..     130    1039 ..     128    1041 .. 0.92

  Alignments for each domain:
  == domain 1    score: 1041.2 bits;  conditional E-value: 0
    TIGR00422    4 kYdpkevekklyekweesgvfkpdedeekes........fiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklkaegktkedlgreefvekilewkeesgetikeqlkrLGvsldwsrerfTldeelskavkeaFvrlyeeglIyrgkrlvnwdpkletaisdlEveykevkgklyyikyklangsgkdklvvATTRPEtllgdtavaVhPeDerykelvgkkvilPlvn.rkipiiaDeevdkefGtGvvkvtpahDknDyevgkrhklelinildedgklneeageyqglerfearkkvvedlkeegllvkieplkqnvgtceRsktvvEpllskQWfVkvekLadkaleaaekegeikfvPkrfekeylsWleelkdWcISRQliwghriPvwy..eketgevvvakeeaeekekt.klgs...keleqdeDVLDTWfsSslwplstlgWp....eekkdlkkfyptsllvtgfDIiffWvarmillslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkveaarkFlnKlwnasrfvlmnledk.............keleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkelyeee....eeekkeakstlaivLdkllrllhpfiPflteeiyqklkek.......adsimlasyPeveee...lvdekaekefelvkeiikevRnlkaesnialnaklevllkleeaeeeaerlkksaedlkkl..ikleevevvsekee......eeeava.kvvpevevlipvkelenkakelaklqkelekekkekeriekkleneafvkkapkevvekekek 861 
                   +Y p+e+e+k+y++we++g+f+pd +++ke+        +++ +PPPnvTG+lH+GHa+ v+lqD+l+R++rm+g  vl+lpG+Dhagiatq  vEk+l aeg ++e++greef+++++++k+e+g+ i++ql++LG+s+dw+rerfT+d++ls+av eaFvrl+++glIyrg+++vnw p l+ta+sdlEvey e++gkly++ky ++ ++g+  l vATTRPEt++gdtav VhP+Deryk+lvgk+ ++P+ n r+ipiiaDe+vd+efGtG++k+tp hD+nDy++gk++ l++ini+++dg+lne+ag y+gl+rf+ar+k+ +d+++e l  k+ p++q+v+ ++R+++v+Epl+s+QWfVk+e +  kal+a+e +g+i+++Pkrf+k  ++Wl++++dWcISRQl+wghriPvwy  e+ ++e +va++eae+++k+ ++g    + l+q+eDVLDTWfsS+lwp+ t+gWp    + ++dl++fyp + l+tg+DI+ffWvarm++++++ltg+ Pf+ +++hglvr ++g KmSK +gNv+dPld +++yGaD+lR+ l++ v++G+Di l+++k+ea+r+F+nKlwn ++fv  n  ++                +e+ +kl l +++i+sk + l+++v+e+++ky++ +a +++yeF+W++++dwyiE++K++lye++      e k+ +++l++vLd +lr+lhp +P++te+++++l+++       a+ +ml+++P+++ +   +++ ++ ++fe    +++++Rn +ae+n+++ +k+++++   +  + +++++ + ++l  l  ++ ++v+vv++ ++      ++e+v+  v+++vev++p+++l++ +ke a+l+k++ k + e ++  ++l++++fv kap++vv+k+k +
  MMETSP1061-20121228|17073_1  130 NYAPTEFENKIYQWWESAGCFEPDAKQTKEEsdandkkpYVLPMPPPNVTGRLHMGHAIFVALQDVLARFHRMRGRPVLWLPGTDHAGIATQLQVEKQLIAEGTSREEVGREEFLDRVWKYKAEQGGHITRQLRSLGASADWTRERFTMDNDLSEAVSEAFVRLHDKGLIYRGEYMVNWAPLLKTAVSDLEVEYTEEEGKLYFFKYMVEGTDGE-FLPVATTRPETIMGDTAVCVHPDDERYKDLVGKQAVVPMGNgRTIPIIADEYVDMEFGTGALKITPGHDPNDYAIGKKFDLPIINIMNKDGSLNENAGVYNGLDRFDARDKLWKDMENESLTIKVDPHTQRVPRSQRGGEVIEPLVSSQWFVKTEGMGAKALKAVE-DGDIEIIPKRFDKIWNNWLTDIHDWCISRQLWWGHRIPVWYvgETGESEFIVARNEAEARSKAvEKGHsedVVLRQEEDVLDTWFSSGLWPFATVGWPgsegDANSDLARFYPGTCLETGYDILFFWVARMVMMGIELTGESPFSVIYLHGLVRAADGSKMSKTKGNVLDPLDTVAEYGADSLRYSLVTGVTPGQDIPLNMEKIEANRNFCNKLWNSCKFVTGNALKDaddaemeelgvtgPMSQEEFDKLLLPEKYIVSKAHALVASVTEDIEKYQLGAAGSKIYEFMWDQYADWYIEISKTRLYEGNgggdVVEAKASRRVLVYVLDIILRVLHPYMPYVTEQLWHHLPRAkagenqaAHALMLSDWPQMNDSeplVTNDASVSSFECFQAVTRSIRNARAEYNVEQGKKISAIVVAPAG-NLKDEIEGELKSLVLLarLDPNDVNVVEAGSDeakaanNDESVQlVVQDGVEVFLPLSGLIDPEKERARLTKQQGKLEVEIQKLAGRLSSKGFVDKAPAAVVDKAKAE 1039
                   7***********************988874334455556***************************************************************************************************************************************************************************9965.***************************************75499**************************************************************************************************************************.7****************************************6656667899*******99997423336779**************************88776779*******************************************************************************************************************9886555567677776654433334445667789***************************************************99988878899999******************************998899999999*********9887333578888999***************************99988777.45666665555544440045578888865433122333344554156789*****************************************************99876 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0     1e-37     6e-35       8     247 ..     133     368 ..     129     384 .. 0.92
   2 !  243.9   0.0   1.2e-75   7.3e-73     312     844 ..     389     920 ..     369     934 .. 0.81

  Alignments for each domain:
  == domain 1    score: 118.4 bits;  conditional E-value: 1e-37
    TIGR00392   8 lskkeekilkkweekdifekvkkk......kedkkefvlhdGPPyanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgiekkeeiesleveefrekcrefalkaieeqkeqfqrlgvlvDfekpYltldkeyeesvlellkelaekgllkrdlkvvywspeletaLaeaEveykeykdvkdpsiyvkfkvkkeekteakvklslliWTtTPWTLpsNlaiavnpdle 247
                   ++ e+ki++ we+   fe  +k+       +dkk +vl   PP  +G++h+gha+  +l D++ r+++m+G  v   pG D  G+   l+vek+l +e++++ e    eef ++  ++ +++  + + q+++lg   D+  +  t+d++  e+v e++ +l++kgl++r+  +v+w+p l+ta ++ Evey+e   ++    + k+ v++  + e     +l + Tt P T++  +a++v+pd e
  MMETSP1061-20121228|17073_1 133 PTEFENKIYQWWESAGCFEPDAKQtkeesdANDKKPYVLPMPPPNVTGRLHMGHAIFVALQDVLARFHRMRGRPVLWLPGTDHAGIATQLQVEKQLIAEGTSREEVGR-EEFLDRVWKYKAEQGGHITRQLRSLGASADWTRERFTMDNDLSEAVSEAFVRLHDKGLIYRGEYMVNWAPLLKTAVSDLEVEYTE---EEGKLYFFKYMVEGT-DGE-----FLPVATTRPETIMGDTAVCVHPDDE 368
                  56789*************988877666777778999**************************************************************9888877777.9*********************************************************************************877...888888899999964.444.....58999*****************955 PP

  == domain 2    score: 243.9 bits;  conditional E-value: 1.2e-75
    TIGR00392 312 vvlggdhVttedGtGivHtAPghGeeDyevgkkygleevllpvdekgvyteevadlkgrfvkdadkdvlkankaiiekLkeknlllkaekikHsyPhcwRtkkPviyrateqwFikvkeikeelleeik..kvkwvpekgekRlkkmlenrkdWciSRqRyWGvPipvwvaekteelivvgsieeleekiekkgidawiedlhkdlldkitlkskeggeykreedvlDvWfdSGsspyavleyklen...ekkkevfpadlilE.GsDQtrGWFyssllisvalsdkapykkvithGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvass.dpaedlkfseeilkevaekllkilnntlrFlllyanLdkfkpeeks....lkveklkelD......rwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskdrlyaekk...dedkraaqttlyeiletlvkllapilpflaeeiyqnlkeek.....keesvhlnefpevdeeavdealeasmklvkeiveavlalrdk.vnkklrqpl 844
                   ++ +++V +e GtG+  + Pgh  +Dy++gkk +l ++++ ++++g  +e++  +       ++ d ++a +++ + ++++ l +k +  + + P   R  + +    ++qwF+k++ + +++l++++   ++ +p++  k  +++l + +dWciSRq  WG  ipvw+  +t+e+  +   +e+e         a       + ++k   ++     +++eedvlD Wf SG  p a++  + ++   +++ ++f    +lE G D    W     ++++ l++++p+  +  hG+v +++G KMSK +gNv dp +++ +yGaD+lR+ +++   p +d+ ++ e ++  ++++ + l+n+ +F++    L++ +++e +    +   +++e D      ++i+sk ++lv++v+e +eky++  + +++ +f+ ++ + wY++isk rly+ +      +++a   +l+++l+ ++++l p +p+++e+++++l++ k      ++   l+++p+++++    + +as++  + +  +++++r++ ++++++q +
  MMETSP1061-20121228|17073_1 389 PIIADEYVDMEFGTGALKITPGHDPNDYAIGKKFDL-PIINIMNKDGSLNENAGVY-------NGLDRFDARDKLWKDMENESLTIKVDPHTQRVPRSQRGGEVIEPLVSSQWFVKTEGMGAKALKAVEdgDIEIIPKRFDKIWNNWLTDIHDWCISRQLWWGHRIPVWYVGETGESEFIVARNEAE---------A-----RSKAVEKGHSED---VVLRQEEDVLDTWFSSGLWPFATVGWPGSEgdaNSDLARFYPGTCLEtGYDILFFWVARMVMMGIELTGESPFSVIYLHGLVRAADGSKMSKTKGNVLDPLDTVAEYGADSLRYSLVTGvTPGQDIPLNMEKIEA-NRNFCNKLWNSCKFVT-GNALKDADDAEMEelgvTGPMSQEEFDklllpeKYIVSKAHALVASVTEDIEKYQLGAAGSKIYEFMWDQYADWYIEISKTRLYEGNGggdVVEAKASRRVLVYVLDIILRVLHPYMPYVTEQLWHHLPRAKagenqAAHALMLSDWPQMNDSEPLVTNDASVSSFECFQAVTRSIRNArAEYNVEQGK 920
                  57888*******************************.5*********777776665.......445555555666667*************************999999*****************9984469**************************************9987764333333222.........1.....223344444444...468889*******************999888775555555555556559*****************************************************************999988***********9975.66699**********9.5557777753322111112233444442222228**************************************************9876111445558899******************************99987766677889999999888766666666665555555555555531334444444 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.8   0.0     1e-29     6e-27       2     235 ..     135     368 ..     134     371 .. 0.90
   2 !   11.8   0.0   1.6e-05    0.0092     272     318 ..     371     418 ..     367     425 .. 0.90
   3 !   23.4   0.3   5.1e-09     3e-06     386     500 ..     433     547 ..     426     565 .. 0.88
   4 !   58.8   0.0   9.5e-20   5.6e-17     616     828 ..     665     923 ..     649     947 .. 0.78

  Alignments for each domain:
  == domain 1    score: 91.8 bits;  conditional E-value: 1e-29
    TIGR00395   2 eiekkyqkrWeeekifead.........pddrekffltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplgfhvtGtPilglaekikrrdektikvytevhavPkeellkladpekiveyfsreaesalkslGysidWrrefkttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsGegvtiveyilikfkledgalylvaatlrPetvyGvtnvfvnPeie 235
                  e e+k  + We +  fe d          +d+  ++l ++ P + G lh+Gh+   +  +v arf+rm+g+ vL+       Gt   g+a +++ + +++    t  ++v +ee+l     ++  e    ++ ++l+slG+s dW re  t d+  ++ +   + +L+++Gli +Ge  v+++p  + +v d ++   e+     +    ++  dg  +l++at rPet+ G t+v v+P+ e
  MMETSP1061-20121228|17073_1 135 EFENKIYQWWESAGCFEPDakqtkeesdANDKKPYVLPMPPPNVTGRLHMGHAIFVALQDVLARFHRMRGRPVLWL-----PGTDHAGIATQLQVEKQLIA-EGTSREEVGREEFLDRV-WKYKAEQ-GGHITRQLRSLGASADWTRERFTMDNDLSEAVSEAFVRLHDKGLIYRGEYMVNWAPLLKTAVSDLEVEYTEEEGKLYFFKYMVEGTDG-EFLPVATTRPETIMGDTAVCVHPDDE 368
                  568999999********99988888877788889****************************************95.....67888899****99877655.5678899*****98643.3444444.5567889******************************************************************999999999999999.789********************865 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.6e-05
    TIGR00395 272 kqligkkvkaP.vvgkevpiLPaefvdaekatGvvlsvPahaPadyia 318
                  k+l+gk+  +P   g+ +pi+  e+vd e +tG +   P h P+dy+ 
  MMETSP1061-20121228|17073_1 371 KDLVGKQAVVPmGNGRTIPIIADEYVDMEFGTGALKITPGHDPNDYAI 418
                  799********667899*****************************85 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 5.1e-09
    TIGR00395 386 kGvlienildykGikveeakekvkedlidkGladvyyefsekkvicrcGdkCvvkvledqWflkysdeeWkekalkcle..kmrlipeevkeafeekidWlkdkavarrkGLGtrlP 500
                   G l+en  +y+G+   +a++k+ +d+ ++ l+  +   +++   ++ G++ +  ++  qWf+k        kalk +e  ++++ip+ + + +++ +  ++d+ ++r+   G r+P
  MMETSP1061-20121228|17073_1 433 DGSLNENAGVYNGLDRFDARDKLWKDMENESLTIKVDPHTQRVPRSQRGGEVIEPLVSSQWFVKTEGM--GAKALKAVEdgDIEIIPKRFDKIWNNWLTDIHDWCISRQLWWGHRIP 547
                  6999****************************9988888777778899***************97555..55666666622699********************************9 PP

  == domain 4    score: 58.8 bits;  conditional E-value: 9.5e-20
    TIGR00395 616 legkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaakkrlerlkefaeeiakksd...........levg....eelsfl...drwllsrlnkaikevkealenlelrkavkaalfelkkd..vdyyrrrsgenvkd...............vlaevleaiikLlaPfaPhlaeelyeev.....Gkeg...fvseakfPevse..eavdkevek.aeeylrnlvrdike.iakiaaskpkkvy 828
                   +g+k+sk+kGn+l   ++v ++Gad  r  l++   + +d+ ++ +++ea ++  ++l + ++ ++ +             + +g    ee++ l   +++++s+ ++++  v+e +e+++l  a    ++e++ d   d+y + s+++  +               vl  vl+ i+++l P++P+++e+l++++     G++     + +  +P++++  + v +++ + + e ++++ r+i++  a+ + ++ kk+ 
  MMETSP1061-20121228|17073_1 665 ADGSKMSKTKGNVLDPLDTVAEYGADSLRYSLVTGVTPGQDIPLNMEKIEANRNFCNKLWNSCKFVTGNALkdaddaemeelGVTGpmsqEEFDKLllpEKYIVSKAHALVASVTEDIEKYQLGAAG-SKIYEFMWDqyADWYIEISKTRLYEgngggdvveakasrrVLVYVLDIILRVLHPYMPYVTEQLWHHLprakaGENQaahALMLSDWPQMNDsePLVTNDASVsSFECFQAVTRSIRNaRAEYNVEQGKKIS 923
                  589***********************************************999988888877776665432345688887762333544555555444578999*******************9999.8899998773369****999998878889999999******************************976442223332111345678**9965116787777651679**********943455555666654 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.3   0.0   1.1e-21   6.5e-19       5     172 ..     135     328 ..     131     339 .. 0.75
   2 ?    1.4   0.0     0.024        14     231     262 ..     335     367 ..     331     377 .. 0.78
   3 !   31.2   0.0   2.3e-11   1.3e-08     302     381 ..     374     443 ..     365     471 .. 0.74
   4 !    8.5   1.3   0.00018       0.1     411     433 ..     531     553 ..     524     562 .. 0.87
   5 !   47.6   0.0   2.5e-16   1.5e-13     604     766 ..     668     867 ..     659     892 .. 0.83

  Alignments for each domain:
  == domain 1    score: 65.3 bits;  conditional E-value: 1.1e-21
    TIGR00396   5 eieekwqqkwkek.......kvkkveedsekkkyYiLsmfP.YPsgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFG....lPaenaaiergtaPakwteeni............akmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevi..dsdG 172
                  e e+k+ q w++        k++k e+d + kk Y+L m P    g+lH+GH    ++ Dvl+R++r++g  vl   G D  G    l  e+  i++gt+ ++  +e               ++ +ql++lg+s dw re  t+d++        F+ l++kgL+y+ e +vnw p +kt + + ev   + +G
  MMETSP1061-20121228|17073_1 135 EFENKIYQWWESAgcfepdaKQTKEESDANDKKPYVLPMPPpNVTGRLHMGHAIFVALQDVLARFHRMRGRPVLWLPGTDHAGiatqLQVEKQLIAEGTSREEVGREEFldrvwkykaeqgGHITRQLRSLGASADWTRERFTMDNDLSEAVSEAFVRLHDKGLIYRGEYMVNWAPLLKTAVSDLEVEytEEEG 328
                  56667666666541111111556677789999******976145788*********************************9993333456899999988876655443211111111111146889******************************************************99998886444455 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.024
    TIGR00396 231 Fkiede.kekiavfttrpdtlfgvtylalaaeh 262
                  + +e++  e + v ttrp+t++g t + + +++
  MMETSP1061-20121228|17073_1 335 YMVEGTdGEFLPVATTRPETIMGDTAVCVHPDD 367
                  5566663466889***********999998876 PP

  == domain 3    score: 31.2 bits;  conditional E-value: 2.3e-11
    TIGR00396 302 tglkainPl.tkekiPiyvanyvlaeYGtgavmgvpahderDfeFakkyklkikevikkaekdlkeealteegvlvnsgef 381
                  +g +a+ P+ ++  iPi + +yv +e+Gtga+   p+hd +D+   kk+ l+i+++++k+   l+e+a +          +
  MMETSP1061-20121228|17073_1 374 VGKQAVVPMgNGRTIPIIADEYVDMEFGTGALKITPGHDPNDYAIGKKFDLPIINIMNKD-GSLNENAGV----------Y 443
                  57789999945679*****************************************99965.333333333..........3 PP

  == domain 4    score: 8.5 bits;  conditional E-value: 0.00018
    TIGR00396 411 lrDWlvsRqRYWGePiPiihled 433
                  ++DW +sRq +WG  iP+ ++ +
  MMETSP1061-20121228|17073_1 531 IHDWCISRQLWWGHRIPVWYVGE 553
                  78***************987755 PP

  == domain 5    score: 47.6 bits;  conditional E-value: 2.5e-16
    TIGR00396 604 ekmskskkngidPqeivkkyGaDalRlyilFasPieksleWdesgleGaeRfldrvynlvkeilsekea...............ktelkeealeeaekelrrevhkalkkvtedlekkeslntviselmkllnallkakk.......................eelllealkalvtvlspiaPhlaeelaeklgeeeseik 766
                  +kmsk k+n++dP + v++yGaD+lR  ++    + +++  + +++e  + f ++++n  k ++++  +                ++ + ++l   ek + ++ h  +++vted+ek + l  + s++ +++   ++                          +++l+  l  +++vl+p++P+++e+l+++l + ++  +
  MMETSP1061-20121228|17073_1 668 SKMSKTKGNVLDPLDTVAEYGADSLRYSLVTGVTPGQDIPLNMEKIEANRNFCNKLWNSCKFVTGNALKdaddaemeelgvtgpMSQEEFDKLLLPEKYIVSKAHALVASVTEDIEKYQ-LGAAGSKIYEFMWDQYADWYieisktrlyegngggdvveakasRRVLVYVLDIILRVLHPYMPYVTEQLWHHLPRAKAGEN 867
                  7*************************9988888999**********************887666543333456788888877664555556666789999*****************99.999999999999776665444455678899********999855999999**********************985553333 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.0   1.2e-11   7.3e-09      10     124 ..     178     310 ..     172     331 .. 0.74
   2 !   16.8   0.0   8.3e-07   0.00048     152     241 ..     461     547 ..     449     553 .. 0.86
   3 !   46.0   0.0   1.2e-15   6.9e-13     314     504 ..     655     862 ..     633     885 .. 0.82

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.2e-11
    TIGR00398  10 angkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAese.........gltPkelvdklae.......efkklfkllnisfd..rFirTtdeehkeivqkifekllenGyiyekeikglYcv 124
                  + g +H+Gh++ + l Dvlar++r+rG  vl++ gtD  G +++l+ e++         ++  +e+ d++ +       ++ +++++l+ s d  r   T d++  e v ++f +l ++G+iy +e+   + +
  MMETSP1061-20121228|17073_1 178 VTGRLHMGHAIFVALQDVLARFHRMRGRPVLWLPGTDHAGIATQLQVEKQliaegtsreEVGREEFLDRVWKykaeqggHITRQLRSLGASADwtRERFTMDNDLSEAVSEAFVRLHDKGLIYRGEYMVNWAP 310
                  6799**************************************99998764222211111444567888764422233335778888888776511444599999999****************9998766655 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 8.3e-07
    TIGR00398 152 cekcgrllePlelieprcvvskakpelkeeehyFfrlskfekkleelikknpeskklasevknvlenflkegLkdlaitRdlvewGipvP 241
                   e ++   +P +   pr+   ++  e   ++++F++++ +  k  + ++  +  +  +++ +++ +n+l + ++d++i+R+l  wG ++P
  MMETSP1061-20121228|17073_1 461 NESLTIKVDPHTQRVPRSQRGGEVIEPLVSSQWFVKTEGMGAKALKAVEDGD-IEIIPKRFDKIWNNWLTD-IHDWCISRQLW-WGHRIP 547
                  4677888899999999999999999999999********9999999999554.455569999999*****9.***********.*****9 PP

  == domain 3    score: 46.0 bits;  conditional E-value: 1.2e-15
    TIGR00398 314 qlvahgyltve.gkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfe.gklksvkea...........seedekllkkieealekidealekfefkkaleeilklv..segnklideekPwelakee....ekekellavllelirvlsillkpilpklsekilkllnle 504
                   +  hg +    g kmSk kgnv+dp d +a+ygad lRY l+  v  ++D+ +++e++ +  N +  nkl N  + + g + k  + ++++   ++              ++ +++k+++ +  + e +ek+++ +a ++i + +  +++  +i+ +k    + +      ++k+ + vl++++ ++  +l+p++p ++e++ + l  +
  MMETSP1061-20121228|17073_1 655 VIYLHGLVRAAdGSKMSKTKGNVLDPLDTVAEYGADSLRYSLVTGVTPGQDIPLNMEKIEA--NRNFCNKLWNSCKFVTGNALKDADdAEMEELGVTgpmsqeefdklLLPEKYIVSKAHALVASVTEDIEKYQLGAAGSKIYEFMwdQYADWYIEISKTRLYEGNGggdvVEAKASRRVLVYVLDIILRVLHPYMPYVTEQLWHHLPRA 862
                  567788887655**********************************************976..6689******999999998887751567777777999976666553335678899************************9987446789999999988888776544456777778888899999999**********998887655 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.65   3.8e+02      31      57 ..     178     204 ..     175     209 .. 0.82
   2 !   16.9   0.0   9.5e-07   0.00056     248     331 ..     652     736 ..     630     796 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.65
    TIGR00435  31 vYdasHlGhaRtlvvfDvlrrilqylg 57 
                  v   +H+Gha  +   Dvl+r  ++ g
  MMETSP1061-20121228|17073_1 178 VTGRLHMGHAIFVALQDVLARFHRMRG 204
                  55679**************99877765 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 9.5e-07
    TIGR00435 248 qlvkyflHngflkiegeKmSKSlgNfitikdllkkfdpralRlllls.vhyrnqldfseelleeaknalerlakalralkedlas 331
                  ++  ++lH      +g KmSK  gN++   d + ++ +  lR+ l++ v   + + ++ e++e+ +n +++l +  + ++ ++ +
  MMETSP1061-20121228|17073_1 652 PFSVIYLHGLVRAADGSKMSKTKGNVLDPLDTVAEYGADSLRYSLVTgVTPGQDIPLNMEKIEANRNFCNKLWNSCKFVTGNALK 736
                  55668999999999*****************************98872566788******************9999877655543 PP

>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.52     3e+02      40      75 ..     169     207 ..     152     210 .. 0.72
   2 !   11.0   0.0   4.9e-05     0.029     265     296 ..     646     677 ..     627     698 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.52
    TIGR03447  40 yvcGitPydat...hlGhaatylafdlvnrvlldaghkv 75 
                  yv  + P + t   h+Gha+     d++ r  +  g+ v
  MMETSP1061-20121228|17073_1 169 YVLPMPPPNVTgrlHMGHAIFVALQDVLARFHRMRGRPV 207
                  55555555544444*****99999999999998887766 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 4.9e-05
    TIGR03447 265 aatgeerlarhyvhagmigldGekmskskGnl 296
                   +tge++++  y+h  + + dG+kmsk+kGn+
  MMETSP1061-20121228|17073_1 646 ELTGESPFSVIYLHGLVRAADGSKMSKTKGNV 677
                  578999********9999*************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1059 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.77u 0.15s 00:00:00.92 Elapsed: 00:00:00.69
# Mc/sec: 2025.75
//
Query:       MMETSP1061-20121228|17076_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|17075_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|17077_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.43
# Mc/sec: 979.17
//
Query:       MMETSP1061-20121228|17078_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1567.87
//
Query:       MMETSP1061-20121228|17084_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.51
# Mc/sec: 799.70
//
Query:       MMETSP1061-20121228|17081_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.49
# Mc/sec: 1344.13
//
Query:       MMETSP1061-20121228|17085_1  [L=559]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-225  748.0   0.0   1.3e-225  747.8   0.0    1.0  1  TIGR00337 PyrG: CTP synthase
    3.6e-06   24.3   0.1    0.00023   18.4   0.0    2.3  2  TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
    0.00016   17.9   0.0     0.0028   13.8   0.0    2.1  2  TIGR01823 PabB-fungal: aminodeoxychorismate synthase
     0.0089   13.6   0.1       0.24    9.0   0.0    2.3  2  TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
  ------ inclusion threshold ------
      0.016   11.0   0.0      0.023   10.5   0.0    1.1  1  TIGR01815 TrpE-clade3: anthranilate synthase
      0.017   11.9   0.1       0.86    6.3   0.0    2.2  2  TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
      0.023   12.3   0.1       0.25    9.0   0.0    2.2  2  TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit


Domain annotation for each model (and alignments):
>> TIGR00337  PyrG: CTP synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  747.8   0.0  2.2e-228  1.3e-225       3     525 ..       1     545 [.       1     546 [. 0.96

  Alignments for each domain:
  == domain 1    score: 747.8 bits;  conditional E-value: 2.2e-228
    TIGR00337   3 akyivvtGGvvsslGkGitaaslgrllkalglkvtiikidpylnidaGtlsPlehGevfvlddGaetdldlGhyerfldteltkennittGkiyskvlekerkGdylGktvqviPhitdeikdrikrvak.......seadvviveiGGtvGdieslpfleairqlkkevgkenvlfihvtlvPyikaagelktkPtqhsvkelrslGiqPdiiicrseeelkkelkekialfcdveeeavieakdvesiyevPlllkkeklddlllkrlkleek.eadlseweelveklaeskeevkialvGkyvelkdaylsvkealkhaalkldlkvnikwidsedleeee.......aelleevdgilvPGGfGerGveGkilaikyarenkiPflGiclGlqvaviefarnvlglkeanstefdeetkepvvallpeqkdkedlGgtmrlGayevklkee.........slakklygke.evkerhrhryevnnelleeleekGlivsgksedgklveiielkdhpffvatqfhPefksrveepsklflglvk 525
                  +kyivvtGGvvs+lGkG+t +s+grll+a+gl+vt+ikidpyln+daGt+sP+ehGevfvl+dG+etdldlG+yerfl+ +lt+++nittGk+y++v+ kerkGdylGktvqv+Phit+ei+d+i+r+a+       +eadv+++e+GGtvGdies +flea+rq+++ vg en+l+  v+lvP+++   e+ktkPtqh vk+lrslG++P +i cr++eel+ ++++ki+ fc+v+++ v++++dv+++y+vPlll+++kl++++ ++l++++  ++dl +w+++ +++++ +++v+i+l+Gky  l+d+yls+++al+haa++++ k+++ w++++dlee++        e +++  g++vPGGfG+rG +Gk+la+ky ren+ P+lG+clG+q  v+e++rnvlgl++ans+efde+ ++pvv ++pe++ ke++Gg mrlG++ +k+++          s ++klyg    v+erhrhryevn+++++++++ Gl+++g++e+g+++e+ e++ hp++v++q+hPefksr+  ps++f gl+ 
  MMETSP1061-20121228|17085_1   1 MKYIVVTGGVVSGLGKGVTISSMGRLLQACGLRVTAIKIDPYLNVDAGTMSPFEHGEVFVLNDGGETDLDLGNYERFLNLQLTQDHNITTGKVYRHVILKERKGDYLGKTVQVVPHITNEIQDWIERTARiptddsgEEADVCLIEVGGTVGDIESSVFLEALRQFQFRVGTENFLLCFVSLVPILSD--EQKTKPTQHGVKDLRSLGLTPSVIFCRCKEELEMATRQKISNFCHVPSDRVLSVHDVRNVYQVPLLLQQQKLHEMIYQHLRIQSPcKPDLGDWANVANQMESWTDTVQICLIGKYNGLQDSYLSIIKALRHAAIACEHKLDLLWVEATDLEENQdtmsgeaWEKVKKCQGVIVPGGFGNRGFDGKVLAAKYCRENNKPYLGVCLGFQAVVVEYSRNVLGLEGANSAEFDEKSPHPVVFFMPEID-KETMGGNMRLGSRVTKFTHPvideatgatSVLQKLYGGAeMVHERHRHRYEVNPDYVDQIHDGGLKLVGRDETGTRMEVAEIPGHPYYVGVQYHPEFKSRPLIPSPPFRGLLL 545
                  79*******************************************************************************************************************************9999999999**********************************************976..***********************************************************************************98899***************************************************************9885555444344555****************************************************************************8.9************99998755666788878999***86539*********************************************************************975 PP

>> TIGR00888  guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     4e-07   0.00023      37      91 ..     353     405 ..     336     421 .. 0.82
   2 ?    3.6   0.0     0.014       8.4     156     167 ..     517     529 ..     466     533 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4e-07
    TIGR00888  37 ikevepkgiilsGgPesvkaenaekvdekifelgvPvlGiCyGmqllakalGgev 91 
                  +  ++ +g+i+ Gg      ++   ++++  e + P lG+C+G+q+++  +  +v
  MMETSP1061-20121228|17085_1 353 V--KKCQGVIVPGGFGNRGFDGKVLAAKYCRENNKPYLGVCLGFQAVVVEYSRNV 405
                  3..4568****************************************99998887 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.014
    TIGR00888 156 kkly.GvqfhPev 167
                  ++ y Gvq+hPe 
  MMETSP1061-20121228|17085_1 517 HPYYvGVQYHPEF 529
                  44444*******6 PP

>> TIGR01823  PabB-fungal: aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.7e-06    0.0028      39     102 ..     341     400 ..     324     411 .. 0.85
   2 ?    1.6   0.0     0.023        14     135     185 ..     474     528 ..     443     532 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.7e-06
    TIGR01823  39 hsDkldddllellqlfdaivvGPGPGdPnvakdvgilsevfelanldevPvlGiCLGfqslcLa 102
                  + D+++++ +e++++ + ++v  G G+     d  +l   +     ++ P lG+CLGfq++++ 
  MMETSP1061-20121228|17085_1 341 NQDTMSGEAWEKVKKCQGVIVPGGFGNR--GFDGKVLAAKYCRE--NNKPYLGVCLGFQAVVVE 400
                  579******************9999988..77888888877776..568***********9876 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.023
    TIGR01823 135 vkstryhsLyankesidsll..alilledeedqilmsv.kakkkPif.GvqyhPe 185
                  v+    h   +n++ +d++    l l+  +e+   m v +   +P++ GvqyhPe
  MMETSP1061-20121228|17085_1 474 VHERHRHRYEVNPDYVDQIHdgGLKLVGRDETGTRMEVaEIPGHPYYvGVQYHPE 528
                  556666777788888888542224455566666666651456788776******9 PP

>> TIGR00566  trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00041      0.24      75      95 ..     385     405 ..     339     414 .. 0.76
   2 ?    2.2   0.0     0.049        29     167     175 ..     520     528 ..     447     531 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00041
    TIGR00566  75 lPilGvClGhqalaqafGadv 95 
                   P lGvClG+qa+      +v
  MMETSP1061-20121228|17085_1 385 KPYLGVCLGFQAVVVEYSRNV 405
                  399*********987665555 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.049
    TIGR00566 167 leGvqfhPe 175
                    Gvq+hPe
  MMETSP1061-20121228|17085_1 520 YVGVQYHPE 528
                  57******9 PP

>> TIGR01815  TrpE-clade3: anthranilate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0     4e-05     0.023     550     608 ..     345     404 ..     336     417 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4e-05
    TIGR01815 550 vaeelldeerpdlvvlspGpGrpkdfdvketi.kaalardlpvfGvclGlqglveafGGe 608
                  ++ e++++++    v+ pG    + fd k    k ++  + p +GvclG+q++v  +  +
  MMETSP1061-20121228|17085_1 345 MSGEAWEKVKKCQGVIVPGGFGNRGFDGKVLAaKYCRENNKPYLGVCLGFQAVVVEYSRN 404
                  5667777777777888999888899999875416699999*************9998765 PP

>> TIGR01368  CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0    0.0015      0.86     210     259 ..     351     397 ..     344     413 .. 0.80
   2 ?    3.3   0.0     0.012       7.1     295     345 ..     479     533 ..     468     541 .. 0.64

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.0015
    TIGR01368 210 eeikklnpdgillsnGPGdPaaveeaietvkklleakiPifGIclGhqll 259
                  e++kk +  g+++  G G+ +  +  +   k + e+++P +G+clG q +
  MMETSP1061-20121228|17085_1 351 EKVKKCQ--GVIVPGGFGN-RGFDGKVLAAKYCRENNKPYLGVCLGFQAV 397
                  5566655..9999999998.5677777788899999**********9976 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.012
    TIGR01368 295 NHgyavdeeslkeeelevthvnlnDgtveglehkelp....vfsvQyHPeaspGp 345
                   H y v+++ +++ +    +    D+t   +e  e+p    ++ vQyHPe ++ p
  MMETSP1061-20121228|17085_1 479 RHRYEVNPDYVDQIHDGGLKLVGRDETGTRMEVAEIPghpyYVGVQYHPEFKSRP 533
                  57888888775544433344444455544454444432223679******87755 PP

>> TIGR01855  IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00042      0.25      64      85 ..     377     398 ..     336     422 .. 0.69
   2 ?    0.7   0.0      0.15        86     174     182 ..     520     528 ..     511     533 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00042
    TIGR01855  64 aekvvkkkkpvlgiClGmQllf 85 
                  a+  ++++kp lg+ClG Q ++
  MMETSP1061-20121228|17085_1 377 AKYCRENNKPYLGVCLGFQAVV 398
                  34567899***********654 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.15
    TIGR01855 174 ivgvQFHPE 182
                  +vgvQ+HPE
  MMETSP1061-20121228|17085_1 520 YVGVQYHPE 528
                  79******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (559 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1941.63
//
Query:       MMETSP1061-20121228|17087_1  [L=694]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (694 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 2290.01
//
Query:       MMETSP1061-20121228|17086_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2357.60
//
Query:       MMETSP1061-20121228|17083_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 2357.60
//
Query:       MMETSP1061-20121228|17090_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 599.45
//
Query:       MMETSP1061-20121228|17091_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 339.40
//
Query:       MMETSP1061-20121228|17089_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.07s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 1457.38
//
Query:       MMETSP1061-20121228|17088_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-99  328.6   0.3    8.9e-99  328.4   0.2    1.0  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
    6.2e-17   59.7   0.7    3.2e-08   31.0   0.0    2.2  2  TIGR00748 HMG_CoA_syn_Arc: putative hydroxymethylglutaryl-CoA synthase
    0.00015   18.6   4.1    0.00054   16.8   0.2    2.8  3  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
     0.0011   15.5   0.3      0.059    9.8   0.1    2.5  3  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.4   0.2  8.7e-102   8.9e-99       3     322 .]      49     383 ..      47     383 .. 0.91

  Alignments for each domain:
  == domain 1    score: 328.4 bits;  conditional E-value: 8.7e-102
    TIGR00747   3 akilsvgsylPekvltnadlekmvdtsDeWivtRtGikeRriAaddetssslgveaakkAieaAklskddidliivattspdlafPsaaalvqakLgikdipafDlsAaCaGflYalsvakayvesGkyk..tvLvvgaeklsslvdlkDRgtcvlFgDGagavvvgeseeege......ilsvelgadgekgellrlpaaekr...aekek....eekskfivmeGkevFklAvrkleeaveevleaaglkkedidllvPHqAnlRiiealakklelkeekvvktvekygntsAasiplaldelleegkikkgdlllleafGgGltwgaalvrf 322
                  ++ ++vg+  P+ v+tn dle +v+t DeWi+tRtGi +Rr+ +  e+  +lgv+aak A+e+A+l++ddid++i at sp+ +f  a+a +++    ++++afDl+AaC+Gfl++ ++a  y+ s + k  ++Lv+ga+ ls++vd++DR+ c+lFgDGaga+vv + +++ +      +l  +++++g  +e l    + +    a+ ++    +++ + ++m+G++v+k+A r++ ++v+e+le+a+++ +d+d+l+ HqAn+Ri++ +ak+l++ +ek++++++ ygntsA sip+al+e++++g++kkgd++   +fG+Gl+wg+a++r+
  MMETSP1061-20121228|17088_1  49 CRPIGVGHAAPKTVITNTDLESVVETDDEWIRTRTGIAQRRVLTSGESLRELGVKAAKDALEMAGLTADDIDVVICATSSPEDMFGDATAIAAEIGCSTNTMAFDLTAACSGFLFGTVTAGMYLSSPNTKltNALVIGADALSRVVDWSDRNQCILFGDGAGAMVVTNQKDSDSdelvpgLLGYSAHSNGAGYEDLNCVYKGSPvevATPTPvtleNSDYNNLAMNGQNVYKFATREVPRVVKEALEEADMTADDVDWLLLHQANIRIMDIVAKRLKIPKEKIITNLADYGNTSAGSIPIALSEAVQSGQVKKGDVIACAGFGAGLSWGSAILRW 383
                  56689*******************************************************************************9987776666666789*************************976543289********************************99887655566666888999****999998877766663332222222235566789**************************************************************************************************************98 PP

>> TIGR00748  HMG_CoA_syn_Arc: putative hydroxymethylglutaryl-CoA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.2   5.4e-10   5.5e-07       5     141 ..      52     189 ..      49     218 .. 0.85
   2 !   31.0   0.0   3.1e-11   3.2e-08     210     298 ..     286     374 ..     267     381 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 5.4e-10
    TIGR00748   5 vgygayipkyrikveeiarvwgddpeaiskgllveekavpgldedtatiaveaarnalkrakidpkdigavyvgseskpyavkptativaeaieatpdltaadlefackagtagiqaalglvesgl..ikyglaigadt 141
                  +g g   pk  i + ++  v + d e i+    + ++ v +  e    ++v+aa++al  a +  +di  v + + s p  +   at +a  i+++ +  a dl  ac     g  +a  +++s    +  +l igad+
  MMETSP1061-20121228|17088_1  52 IGVGHAAPKTVITNTDLESVVETDDEWIRTRTGIAQRRVLTSGESLRELGVKAAKDALEMAGLTADDIDVV-ICATSSPEDMFGDATAIAAEIGCSTNTMAFDLTAACSGFLFGTVTAGMYLSSPNtkLTNALVIGADA 189
                  6889999*************************************************************977.667899******************************9765544333333334330134688899986 PP

  == domain 2    score: 31.0 bits;  conditional E-value: 3.1e-11
    TIGR00748 210 vvtaakglmeklglkaedfdyavfhqpngkfylkaarilglekekvkpglltpvigntysgatpvglsavld..vaepgerilavsygsga 298
                  v    k  +e+  ++a+d d+ ++hq n +++  +a+ l ++kek+ + l     gnt +g++p+ ls+ ++   ++ g+ i    +g+g 
  MMETSP1061-20121228|17088_1 286 VPRVVKEALEEADMTADDVDWLLLHQANIRIMDIVAKRLKIPKEKIITNLA--DYGNTSAGSIPIALSEAVQsgQVKKGDVIACAGFGAGL 374
                  556678899************************************998874..57*************99872257899999999999985 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.2   5.2e-07   0.00054       5     119 ..      81     196 ..      78     202 .. 0.78
   2 ?   -1.2   0.0      0.16   1.6e+02     243     265 ..     205     227 ..     186     246 .. 0.79
   3 ?    1.7   0.2      0.02        21     288     331 ..     288     330 ..     266     376 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 5.2e-07
    TIGR01930   5 vRtpigklggslkelsaedLlaavikelleragldpekidevilGnvlqageqaniaReaalaaglpesvpaltvnrvCaSglqAvalaaqkikaGead..vvvaGGvEsmSrvpil 119
                  +Rt i++ +   +  s  +L++++ k +le agl++++id vi++++ ++   +  a  +a + g+++++ a++++ +C+  l    +a + +++ + +   +++ G++ +Srv  +
  MMETSP1061-20121228|17088_1  81 TRTGIAQRRVLTSGESLRELGVKAAKDALEMAGLTADDIDVVICATSSPED-MFGDATAIAAEIGCSTNTMAFDLTAACSGFLFGTVTAGMYLSSPNTKltNALVIGADALSRVVDW 196
                  577777756667788899*************************98877765.4788999999*****************98877777777777665443114566677777776655 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.16
    TIGR01930 243 lnDGAaalllmseevakelgltp 265
                  + DGA+a+++++++  ++ +l p
  MMETSP1061-20121228|17088_1 205 FGDGAGAMVVTNQKDSDSDELVP 227
                  569********998877766665 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.02
    TIGR01930 288 pAiekaLkkaglsisdidlvEinEAFAaqvlavekelgsldlek 331
                    +++aL++a+++++d+d+  ++ A    + +v+k l+ + +ek
  MMETSP1061-20121228|17088_1 288 RVVKEALEEADMTADDVDWLLLHQANIRIMDIVAKRLK-IPKEK 330
                  56889999999999999999888887777777777777.43444 PP

>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.1   5.8e-05     0.059     277     344 ..     101     167 ..      89     174 .. 0.88
   2 ?   -3.0   0.0      0.45   4.6e+02     222     240 ..     198     216 ..     191     221 .. 0.74
   3 !    2.9   0.0    0.0076       7.8     278     308 ..     287     317 ..     280     324 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 5.8e-05
    TIGR03150 277 aaramkaalkdaglkpeevdyinaHgtstplgdkaEtkaikkvfgehakklavsstKsmtGHlLGaaG 344
                   ++a k al++agl+++++d + + +ts p +   +++ai + +g +++++a   t +  G l+G+  
  MMETSP1061-20121228|17088_1 101 GVKAAKDALEMAGLTADDIDVVIC-ATSSPEDMFGDATAIAAEIGCSTNTMAFDLTAACSGFLFGTVT 167
                  67899***************8765.8999999999****************************99754 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.45
    TIGR03150 222 kdrdGFvlgeGagvlvlEe 240
                   + +  ++g+Gag +v+ +
  MMETSP1061-20121228|17088_1 198 DRNQCILFGDGAGAMVVTN 216
                  4455667899**9999865 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.0076
    TIGR03150 278 aramkaalkdaglkpeevdyinaHgtstplg 308
                   r +k+al++a++++++vd++  H     + 
  MMETSP1061-20121228|17088_1 287 PRVVKEALEEADMTADDVDWLLLHQANIRIM 317
                  5789****************99998766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1877.18
//
Query:       MMETSP1061-20121228|17092_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.25
# Mc/sec: 3389.48
//
Query:       MMETSP1061-20121228|17093_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-37  127.6   2.3    1.4e-37  127.3   1.6    1.1  1  TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
    2.4e-36  123.4   4.5    3.3e-36  122.9   3.1    1.2  1  TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase
    3.9e-08   30.7   0.1    6.6e-08   30.0   0.1    1.3  1  TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
    4.7e-07   26.8   0.2    6.6e-07   26.3   0.1    1.2  1  TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
     0.0076   13.7   0.0      0.012   13.1   0.0    1.3  1  TIGR00112 proC: pyrroline-5-carboxylate reductase
  ------ inclusion threshold ------
       0.01   12.6   0.0      0.017   11.9   0.0    1.3  1  TIGR01035 hemA: glutamyl-tRNA reductase


Domain annotation for each model (and alignments):
>> TIGR01505  tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.3   1.6   2.1e-40   1.4e-37       2     285 ..      91     389 ..      90     395 .. 0.86

  Alignments for each domain:
  == domain 1    score: 127.3 bits;  conditional E-value: 2.1e-40
    TIGR01505   2 vgfiGlGimGkPmsknllkaGyq......lvvatleqealdel...laaGa.esaetakevvedadvivtmvPdsPqveevalGenGileaakkGkvlvdmssiaPleskelakavkekGidvldaPvsGGeagaiegtlsimvGGdkavfdkvkp.llealgksiv.lvGenGaGqtvkvanqvivalnieavsealvlaekaGvdpkavlqalrGGlagstvleakkerlldrdfkPGfridlhqkdlalaldaakavgaalPvtavvaellaalradGdgtl...dhsalvralek 285
                  vgfiGlGimG+ m+  ll  G        l v ++ + + + l    +    +  +t  evv d+ v   m+      + v   enG+l +  +Gk +vd +++a  + + + kav +kG+++l+aPvsG    a +g l  +  G +a f+++k+  l+a+gk+   +  + G G  +k+    ++   ++a  e l l e  G dpk++ +++  G   s +++ k+++++ +d  P f ++  +kd+ala d aka g++  v  +  +l++  r d + ++   d sa+ + + k
  MMETSP1061-20121228|17093_1  91 VGFIGLGIMGEGMAARLLSEGVAgtesapLIVWNRTKSKCEALkekYSDKNiVIKDTPSEVVADCGVTYSMLSTPEASKSVFEAENGVLAGVSDGKSIVDCATLAETDMVSMDKAVCDKGGRFLEAPVSGSKGPAHQGSLIFLCAGSEALFNEIKDdGLKAMGKASHfFSTDVGYGTRAKLVVNSLMGTMLAAFGEGLALSEGMGLDPKTMIEVIGQGAIQSPMFNLKGPKMIVKDHAPNFPLKHAHKDMALACDMAKAAGVEYSVMETAEKLFRGAREDSELNVadeDFSAVFEKVHK 389
                  8*****************87653222444677777666555551114444414557889*************98888899999**********************************************************************99637*****9765167899*******9988889999***************************************************************************************9998754312266776666555 PP

>> TIGR01692  HIBADH: 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   3.1   4.8e-39   3.3e-36       1     285 [.      93     385 ..      93     388 .. 0.89

  Alignments for each domain:
  == domain 1    score: 122.9 bits;  conditional E-value: 4.8e-39
    TIGR01692   1 fiGlGnmGgpmaanllkagh......avrvfdlsakaveelvea....GaqaaasaaeaveeadvvitmlPagkhvesvyagdegilakvkkksllidsstidvdsarkvaeeaaakGavfldaPvsGGvggaraGtltfmvGgeaeefarae.pvleamgkn.ivhaGdaGaGqaakiCnnlllgismiGvaealalgeklGldpkvlaeilskssGrcWsldtynPvPGvveqaPasngykgGfatalmlkdlglaqeaaksvkasvllGalarelyslfa...skgagkkdfsavik 285
                  fiGlG mG++maa ll  g       +++v++ + +++e l+e+     + + +++ e+v++  v  +ml + + ++sv+ +++g+la v+ +  ++d++t++     ++ +++ +kG +fl+aPvsG  g a+ G+l f+  g+++ f++ + + l+amgk   +++ d+G G  ak+  n l+g  ++   e lal+e +Gldpk++ e++ + + ++   ++  P   v ++aP        f  +   kd+ la + ak+++ +  +  +a++l++      + +  ++dfsav++
  MMETSP1061-20121228|17093_1  93 FIGLGIMGEGMAARLLSEGVagtesaPLIVWNRTKSKCEALKEKysdkNIVIKDTPSEVVADCGVTYSMLSTPEASKSVFEAENGVLAGVSDGKSIVDCATLAETDMVSMDKAVCDKGGRFLEAPVSGSKGPAHQGSLIFLCAGSEALFNEIKdDGLKAMGKAsHFFSTDVGYGTRAKLVVNSLMGTMLAAFGEGLALSEGMGLDPKTMIEVIGQGAIQSPMFNLKGPKMIVKDHAP-------NFPLKHAHKDMALACDMAKAAGVEYSVMETAEKLFRGARedsELNVADEDFSAVFE 385
                  9***************9875222222699***99999999987621115567899**********************************************************************************************9987258*****9626899***********************************************9999998888888877776666.......699999*****************************97653223467899*****97 PP

>> TIGR00872  gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   9.6e-11   6.6e-08       3     211 ..      91     308 ..      89     323 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 9.6e-11
    TIGR00872   3 lgliGlGrmGaniakrlakrghe......vvgydrdqdaveelkedraegvanlkellkrl.saprvvwvmvpag.ivdavleelapll...ekGdividgGnsyykdslrrekelkekgihlldvGtsGGvlGkerGy.clmiGGdeeafkkae.plfkdvaveekGylylGeaGsGhfvkmvhnGieyGlmaalaeGlevlknsqfdfdleevarvyrrG 211
                  +g+iGlG mG  +a rl   g        +++++r+++  e+lke+ + + + +k+  +++     v + m+ +  + ++v+e  + +l   + G  ++d+      d +  +k + +kg ++l++ +sG    +++G   ++  G e  f++ +   +k  a+ +  + +  + G G  +k+v n +   ++aa++eGl + +      d + + +v  +G
  MMETSP1061-20121228|17093_1  91 VGFIGLGIMGEGMAARLLSEGVAgtesapLIVWNRTKSKCEALKEKYSDKNIVIKDTPSEVvADCGVTYSMLSTPeASKSVFEAENGVLagvSDGKSIVDCATLAETDMVSMDKAVCDKGGRFLEAPVSGSKGPAHQGSlIFLCAGSEALFNEIKdDGLK--AMGKASHFFSTDVGYGTRAKLVVNSLMGTMLAAFGEGLALSEGM--GLDPKTMIEVIGQG 308
                  799*************998764322233389*************88888888888876665156778999998776778888765555422289************************************999899986256777888888755404444..555667999*****************************987654..34455555555555 PP

>> TIGR00873  gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.1   9.7e-10   6.6e-07       2     150 ..      91     245 ..      90     304 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 9.7e-10
    TIGR00873   2 iGliGlavmGknlvlniadkGfs......vavynrtkektdellkeeakgkklvgaesieefvkslekPrkilllvkaGaavdavieellpllekgdiiidGGnslykdterrekelkekgilfvGvGvsGGeeGarkGPslm.pGGskeayelve 150
                  +G+iGl++mG+ ++  + ++G        + v+nrtk+k ++ lke+ ++k++v   +  e+v+       +l   +a ++v ++ + +l  + +g  i+d      +d     k++ +kg +f+ + vsG    a +G  +    Gs++ +++++
  MMETSP1061-20121228|17093_1  91 VGFIGLGIMGEGMAARLLSEGVAgtesapLIVWNRTKSKCEA-LKEKYSDKNIVIKDTPSEVVADCGVTYSMLSTPEASKSVFEAENGVLAGVSDGKSIVDCATLAETDMVSMDKAVCDKGGRFLEAPVSGSKGPAHQGSLIFlCAGSEALFNEIK 245
                  8***************999987433333388*********97.57789*************************************************************************************99***998751567777777776 PP

>> TIGR00112  proC: pyrroline-5-carboxylate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.8e-05     0.012       1      57 [.      91     152 ..      91     193 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.8e-05
    TIGR00112   1 iaiiGaGnmgeallsgllkkg..akakkeilvierseeklaalakelg...vevtsdaeeav 57 
                  +++iG G mge +++ ll++g    ++++++v +r ++k +al ++++   +  + +  e+v
  MMETSP1061-20121228|17093_1  91 VGFIGLGIMGEGMAARLLSEGvaGTESAPLIVWNRTKSKCEALKEKYSdknIVIKDTPSEVV 152
                  68*****************9955456789999999999999998888754455555555555 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   2.5e-05     0.017     182     247 ..      90     161 ..      77     182 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.5e-05
    TIGR01035 182 kvlliGaGemaeLvakhLkekgv.....kkvlilnRtyekaekLakeleeeavkle.kleealaeadiviss 247
                   v  iG+G m+e +a  L+ +gv     + +++ nRt++k e L ++ +++++ ++   +e++a++ +  s 
  MMETSP1061-20121228|17093_1  90 SVGFIGLGIMGEGMAARLLSEGVagtesAPLIVWNRTKSKCEALKEKYSDKNIVIKdTPSEVVADCGVTYSM 161
                  56678888888888888877777222225699******************9999884456777777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.37
# Mc/sec: 1562.47
//
Query:       MMETSP1061-20121228|17094_1  [L=667]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-15   53.1   0.0    3.8e-15   52.6   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      1e-05   22.9   0.1    1.9e-05   22.0   0.1    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.6   0.0   1.9e-18   3.8e-15      90     197 ..     413     515 ..     404     518 .. 0.92

  Alignments for each domain:
  == domain 1    score: 52.6 bits;  conditional E-value: 1.9e-18
    TIGR03903  90 DalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaev 197
                   ala+ h++G++hRD+kP ni     +   +  + DFG +  lp ++d     + r t + GsP Y aPe  R  p  ak D+Y++G++  e L  ++  +G  +a++
  MMETSP1061-20121228|17094_1 413 SALAHLHRHGILHRDIKPSNIGFNGLG---NLTLFDFGFARELPFTGD--PIAIFRMTGFCGSPRYMAPEVGRKRPYNAKCDVYSFGVLAWEILALQKPFEGCGIADM 515
                  59******************9775544...5689************99..88999*****************************************999999999875 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.1   9.5e-09   1.9e-05      94     137 ..     406     450 ..     392     454 .. 0.87

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 9.5e-09
    TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgk 137
                   ++++++ ++++lH++gi+h D+ +sNi ++  ++l+l DfG ++
  MMETSP1061-20121228|17094_1 406 VACRDLASALAHLHRHGILHRDIKPSNIGFNgLGNLTLFDFGFAR 450
                  67999*************************73589*******986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (667 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 2445.46
//
Query:       MMETSP1061-20121228|17096_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-12   42.7   4.7    1.3e-11   41.8   3.2    1.4  1  TIGR00898 2A0119: cation transport protein
    1.1e-08   32.3   8.2    1.4e-08   31.9   5.4    1.5  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    2.9e-06   25.3   0.9    2.9e-06   25.3   0.6    2.5  2  TIGR00880 2_A_01_02: multidrug resistance protein
    8.4e-06   22.4   1.8    1.2e-05   21.9   1.2    1.2  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    1.1e-05   22.5   5.0    1.3e-05   22.3   3.0    1.5  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    0.00032   17.2   2.9    0.00053   16.5   2.0    1.4  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    0.00043   17.5   6.0    0.00043   17.5   4.2    2.1  2  TIGR00900 2A0121: H+ Antiporter protein
     0.0014   16.0   1.9     0.0014   16.0   1.3    1.6  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
     0.0018   15.1   5.2     0.0024   14.7   3.6    1.2  1  TIGR00890 2A0111: oxalate/formate antiporter
     0.0056   13.6   2.9     0.0073   13.2   2.0    1.2  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
  ------ inclusion threshold ------
      0.014   12.0   3.1      0.019   11.5   2.1    1.3  1  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
      0.018   11.8   0.8      0.023   11.4   0.6    1.1  1  TIGR00887 2A0109: phosphate:H+ symporter
       0.15    7.7   5.7       0.19    7.4   3.9    1.1  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   3.2   4.2e-14   1.3e-11     129     234 ..      78     184 ..      72     190 .. 0.81

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 4.2e-14
    TIGR00898 129 kltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRai...vgilievffalGllllall 234
                   l+  +++vG   +s+ +Gq+sD++GR  v+  s l +av+++l  +s n++  l++r++ G+  + i +v  vL+tE+  + +R +   +  l+  ++ lG+l+ + +
  MMETSP1061-20121228|17096_1  78 GLIACSFMVGRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSSNFYLALLWRGILGLCNGIIGPVK-VLVTEYN-RGDRNKeteMMGLVIGTWGLGFLINPAI 184
                  577889*********************************************************987766665.7889974.4444331113333556788888887765 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   5.4   4.5e-11   1.4e-08      37     165 ..      58     189 ..      19     218 .. 0.75

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 4.5e-11
    TIGR00895  37 gfaapalskewg..ldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEya.pkrfr.atvvglvavGyaiGaavggllaalli 165
                  gf+a +l   ++   + + +G +  + ++G  + ++  g ++D++gR+ v+  s+ll +vf+++ +l+ n+   l+ R + gl   g+++ + +Lv Ey  ++r + + ++glv+  + +G ++  +++++l 
  MMETSP1061-20121228|17096_1  58 GFMAMQLVPGLNeeTSGSYAGLIACSFMVGRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSSNFYLALLWRGILGLCN-GIIGPVKVLVTEYNrGDRNKeTEMMGLVIGTWGLGFLINPAITGFLA 189
                  55555555544411334578************************************************************99975.5788899******7467776345777777778888888888877764 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.4      0.33     1e+02      47      67 ..      72      92 ..      34      97 .. 0.74
   2 !   25.3   0.6   9.3e-09   2.9e-06      19     124 ..      96     203 ..      90     217 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.33
    TIGR00880 47 lssnitvliiarilqGfgaaa 67
                 +s ++++li + +++G +a+ 
  MMETSP1061-20121228|17096_1 72 TSGSYAGLIACSFMVGRTASS 92
                 568999999999999977764 PP

  == domain 2    score: 25.3 bits;  conditional E-value: 9.3e-09
    TIGR00880  19 glltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalva.gaaliadiikeeersvalgllsagialgpilGpllGavla.qalgwralflila 124
                  g ++d++Gr  v+  +l++ +++++lf lssn+ + ++ r + G+  +++ ++ +  +     ++++ + ++gl+     lg+++ p+++++la +a ++   fl+ +
  MMETSP1061-20121228|17096_1  96 GQISDKYGRVFVIRASLLLSAVFSILFGLSSNFYLALLWRGILGLCNGIIGPVkVLVTEYNRGDRNKETEMMGLVIGTWGLGFLINPAITGFLAePAKQFPESFLVRI 203
                  45788*****************************************9999876144444455666689999***********************77777766666655 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   1.2   3.8e-08   1.2e-05      77     201 ..      76     199 ..      69     230 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.8e-08
    TIGR00894  77 lqGlilssvfygslilqipvGylakkygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGlaeglvspaqhellakWi..PPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavf 201
                    Gli  s++ g        G +++kyg   vi a+llls v+s+l   +++   al  + R + Gl +g++ p +  l++ +     +  + ++++v++   lG li   i+G+++e    +p  f
  MMETSP1061-20121228|17096_1  76 YAGLIACSFMVGRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSSNFYLAL--LWRGILGLCNGIIGPVKV-LVTEYNrgDRNKETEMMGLVIGTWGLGFLINPAITGFLAEPAKQFPESF 199
                  5699**********************************************9987776..57************9875.555554113456678999*********************9877777655 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   3.0     4e-08   1.3e-05      28     110 ..      73     154 ..      58     190 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4e-08
    TIGR00881  28 sktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltk 110
                  s +  Gl++ +f++  + s f  g +sD+++ + ++ + L+l+a+ ++++g ss++ + ++ + + Gl +g+  p+   l+t+
  MMETSP1061-20121228|17096_1  73 SGSYAGLIACSFMVGRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSSNFYLALLWRGILGLCNGIIGPVKV-LVTE 154
                  555679***************************************************999999*********999876.5554 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   2.0   1.7e-06   0.00053      93     172 ..      69     145 ..      23     156 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.7e-06
    TIGR00879  93 lsdasssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGia 172
                  +++ s s+ gl++++++vG +  ++  g +sd++gr   + ++ ll+ + +il +l+++   + ++ + R +lG++ Gi+
  MMETSP1061-20121228|17096_1  69 NEETSGSYAGLIACSFMVGRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSSN---FYLALLWRGILGLCNGII 145
                  344788999**************************977777666666666666655555...4489**********9997 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   4.2   1.4e-06   0.00043     222     325 ..      43     153 ..      26     174 .. 0.69
   2 ?    2.1   0.2     0.068        21     245     317 ..     164     235 ..     147     240 .. 0.72

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.4e-06
    TIGR00900 222 nlvfapiisvllpy...vtskv.....lrrssvevgvvlaafglGallGalllgllgkylkraalitiavlviglailvlgllnpnlllllvlaaaiGvvvglinviigtll 325
                  +lv + +++ ++py   ++++       + s   +g++  +f++G ++ +++ g ++ +  r ++i ++ l+ +++ ++ gl++ n+ l l+   ++G+++g+i ++ + ++
  MMETSP1061-20121228|17096_1  43 MLVQSFLLVGVFPYsgfMAMQLvpglnEETSGSYAGLIACSFMVGRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSS-NFYLALLWRGILGLCNGIIGPVKVLVT 153
                  333333334444442212222233321123445679**********************************************99.6999999999******99977665544 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.068
    TIGR00900 245 svevgvvlaafglGallGalllg...llgkylkraalitiavlviglailvlgllnpnlllllvlaaaiGvvvgli 317
                     +g+v    glG l+   ++g    ++k++ + +l+ i      ++++  ++l pn++  l + +a+G+v +++
  MMETSP1061-20121228|17096_1 164 TEMMGLVIGTWGLGFLINPAITGflaEPAKQFPESFLVRI----FEPLLTAFPFLLPNVVGSLFCLIAAGLVHSFV 235
                  4457888888888888888888888888999999999996....55555555555556777777777777777665 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.3   4.4e-06    0.0014      38     105 ..      73     140 ..      68     190 .. 0.73
   2 ?   -3.3   0.0       3.2     1e+03     166     189 ..     221     244 ..     218     249 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4.4e-06
    TIGR00710  38 sasavqltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqaf 105
                  s+s   l   ++++g +++   +G +sD+yGR  v+   ll+ a+ s+   ls+n    l  R + ++
  MMETSP1061-20121228|17096_1  73 SGSYAGLIACSFMVGRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSSNFYLALLWRGILGL 140
                  56666677789*****************************************9998877777755544 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 3.2
    TIGR00710 166 sligillvaliflllpeTkakekr 189
                  sl  ++++ l+  ++ eT++ e+r
  MMETSP1061-20121228|17096_1 221 SLFCLIAAGLVHSFVEETLPLEQR 244
                  566788888999999999998876 PP

>> TIGR00890  2A0111: oxalate/formate antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   3.6   7.5e-06    0.0024      29     160 ..      64     200 ..      31     233 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.5e-06
    TIGR00890  29 lgrklrvkvtavaiaf..tlllivlalsqvvgGkladkfGpravallggillgiGfifaaladslallyltyglasvgegivY..gialstavkWfpdkrGLasgiiiggyGlGslilsplitsvie..legveaafi 160
                  l+  l+ + ++   ++    ++++ + s++  G++ dk+G   v  ++  l+++  i+ +l+ +  l +l  g+ ++ +gi+    + +   ++   +k   + g++ig +GlG l ++p it ++    +++++ f+
  MMETSP1061-20121228|17096_1  64 LVPGLNEETSGSYAGLiaCSFMVGRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSSNFYLALLWRGILGLCNGIIGpvKVLVTEYNRGDRNKETEMMGLVIGTWGLGFL-INPAITGFLAepAKQFPESFL 200
                  555555554333333210346789999************97777777777777777************************99621455677889999999999**********955.678888777544444555554 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   2.0   2.3e-05    0.0073      45     155 ..      72     184 ..      39     212 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.3e-05
    TIGR00891  45 ttkdvafllsaaliv.rsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvP..kklrsvlsGllisgyavGfvlaavv 155
                  t    a l++  ++v r++ +   G ++D++gr + +  s+ l +v ++l + + ++   l  r ++G+   G+ G    l+ e      ++ + + Gl+i ++ +Gf++   +
  MMETSP1061-20121228|17096_1  72 TSGSYAGLIACSFMVgRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSSNFYLALLWRGILGLC-NGIIGPVKVLVTEYNRgdRNKETEMMGLVIGTWGLGFLINPAI 184
                  55566677777766549999999*********************************************97.7999*999999997651144456789***********987555 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   2.1   6.1e-05     0.019      44     141 ..      82     184 ..      32     193 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 6.1e-05
    TIGR00711  44 TsymvanaivIpltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekr.......glalalvglavlvaPvl 141
                   s+mv  + +    g + ++ g++ +   s+l+ ++ s+l g+++n+ l ++ R i g+ +g++ p+   +l++ey    r       gl+++ +gl+ l+ P++
  MMETSP1061-20121228|17096_1  82 CSFMVGRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSSNFYLALLWRGILGLCNGIIGPVK--VLVTEYNRGDRnketemmGLVIGTWGLGFLINPAI 184
                  566666666666666777888888888889************************************86..45555555555001111144555555555555554 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.6   7.1e-05     0.023      55     170 ..      74     184 ..      30     199 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.1e-05
    TIGR00887  55 ssvsalvkasasvgtllgqllfglladllgrkrvygleliivivatvasalsakssalsvvatllfyrlllgvGiggdyplsaiits.efatkkrRGaliaavFamqgfGilagaiv 170
                   s  +l+  s +vg+ + ++++g ++d+ gr +v    l++  v +++ +ls +        + l +r +lg+  g   p+   +t  ++ ++ +   ++++v    g+G l    +
  MMETSP1061-20121228|17096_1  74 GSYAGLIACSFMVGRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSSN------FYLALLWRGILGLCNGIIGPVKVLVTEyNRGDRNKETEMMGLVIGTWGLGFLINPAI 184
                  45668999999****************************999999999888753......456678999999998888898877663234556667789999999999998876555 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   3.9    0.0006      0.19     201     302 ..      74     176 ..      38     188 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0006
    TIGR01299 201 dsnkgllglivylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgv..giggaipivfsyfaevlarekrgehlswlcmfwmi 302
                   s  gl+     +g    +f wg ++dk gr   +  sl + +vf++l  +   + + ll r + g+  gi g + ++ + +     r+k  e +  +   w +
  MMETSP1061-20121228|17096_1  74 GSYAGLIACSFMVGRTASSFGWGQISDKYGRVFVIRASLLLSAVFSILFGLSSNFYLALLWRGILGLcnGIIGPVKVLVTEYNR-GDRNKETEMMGLVIGTWGL 176
                  3445566666667777779******************************99999999999999888733555666555444432.3456666666655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.34
# Mc/sec: 1176.26
//
Query:       MMETSP1061-20121228|17097_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-05   22.4   0.1    0.00011   20.2   0.0    2.0  2  TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family


Domain annotation for each model (and alignments):
>> TIGR02281  clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   2.7e-08   0.00011      13      79 ..     314     381 ..     312     395 .. 0.82
   2 ?   -1.0   0.0       0.1   4.2e+02      93     108 ..     415     430 ..     387     434 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.7e-08
    TIGR02281  13 aaeakvngkkveflvDTGAtsvalteedAkrlGldlekleykvtvsTAnGeaka.arvkldrvkigei 79 
                  +++ak+n ++++++vD GA ++ ++++ Akr G+    +     v    G+ k   r+++ +++ig+ 
  MMETSP1061-20121228|17097_1 314 YINAKINHHSLQAFVDSGAQMTIMSKSCAKRCGILHLLDRRFRGVAVGVGTGKIlGRIHIVQLQIGDY 381
                  689******************************98766666666666666655424899999999986 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.1
    TIGR02281  93 alsesLlGmsfLkrle 108
                  +  + LlG+ +Lkr++
  MMETSP1061-20121228|17097_1 415 KDMDLLLGLDMLKRFN 430
                  3456799*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2385.23
//
Query:       MMETSP1061-20121228|17095_1  [L=811]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (811 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 2744.70
//
Query:       MMETSP1061-20121228|17098_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-28   94.7  11.0    3.2e-27   93.0   7.6    1.6  1  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    1.4e-18   64.9   6.9    4.1e-18   63.3   4.8    1.6  1  TIGR00893 2A0114: D-galactonate transporter
    2.6e-16   57.5   4.5    8.8e-16   55.7   3.1    1.8  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    1.4e-07   28.8   0.1    2.1e-07   28.2   0.1    1.3  1  TIGR00712 glpT: glycerol-3-phosphate transporter


Domain annotation for each model (and alignments):
>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   7.6   3.1e-30   3.2e-27      76     423 ..      17     415 ..      14     423 .] 0.79

  Alignments for each domain:
  == domain 1    score: 93.0 bits;  conditional E-value: 3.1e-30
    TIGR00894  76 klqGlilssvfygslilqipvGylakky..gtkkvigaalllssvlslliPiaaavgv.al....vivlRvlqGlaeglvspaqhellakWiPPkERsrlvs...avlsGaqlGt.livlpisGlicesd........lgWpavfYifgivgtvvlilwlvlvyddPseHpkisesEkkyiekslveevss...........srkslPiKailkSlpvwaivvasvghiwgleilltylPtfiksvlhlnirenGllSsLPyllafllavlassladyl....lsrkklsktav..........rKlftaiglllkgliv....vala.yls..snaisaiilltlanalaglvlsGvlinaldlaPryagiikgvttligslaglissllvgqllkqd 423
                  ++q  ++++ + g +++q  +G l +++  gtk  i+++l+     + l+P + +           +vl + qG+  g++ p++++ll kW+ P+ER+++++   + +s a++G+ ++v  i+ + + ++         gW   fY +g     +l +w++l  ++P    +is++E + i++  +e+v++           +  +lP++ il    +    + ++ +++    l  ++Pt+ ++vl++n +   +   LP l+afl+++ +s++a  +     ++k+ls+  v          r+++  +g+l  ++ +    +a++  l+  +   +  +l  +a a +g++   + +n ld++ +++g++ gv ++ +s+ ++ s+++vg+++k  
  MMETSP1061-20121228|17098_1  17 SQQAKLIAAPSVGNIFTQALGGSLINILpgGTKTAIAIGLAGLATGCTLLPLSIRPQSkSPllskAFVLLATQGALFGAMFPSHSVLLSKWLTPNERGSAMAygeIAMSAASMGVpVVVTSIAEYTAKLSttsptspiMGWRNGFYATGFACFSYLCVWVMLGRNEPDSCSYISKKELDLIHSVQTESVQAttngkqsdkgdTATPLPWQRILLHPSILSLFLVHMLYNFVALSLNSWMPTYYNDVLQMNPKDSKVHIVLPQLAAFLVKLCVSKVALIVrevrKKQKRLSHETVndersmilfsRRVMSCMGFLIMAIPLwllpMAVPsVLGssYSPWLSTVLFSVALAGTGFHAESFRANYLDVTEKHVGLVSGVGNCLSSVSAMCSPFVVGKIIKMT 415
                  688889999999999****9**99999944578888888887788899999876532202111236899999**************************9986444789999***6256667888888776899************************************************8755555554455577777777789*******************************************************************99966522113456777644322222112225666666666655533111123221233447777889999***************************************************9864 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   4.8     4e-21   4.1e-18      25     380 ..      13     422 ..       9     423 .] 0.79

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 4e-21
    TIGR00893  25 glsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafat.........alvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs.............WqlvFiieGvlaiilgvlilkvikdkpekak.vlkeeeksivvggllaeqa.......gkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkg................kslvlarktaiiaglvls....llliatnlva....skiaalalvalaffgkgl.aailwavisdvlskeiagltgGlinllGnlagivgPivigai.aattGsfaga 380
                  g+++ q    ++a s+g ++ q +gg l++ ++  +  a+ai l gl t+ + ++           l + +vl +  G+ ++++fP  + ++++W  ++er++a+++   a + +++ ++ +v +i+                 W+  F  +G  ++    +++++ +++p++   ++k+e + i + + ++ qa       + k  +a       +L ++ ++ l+l+ +l+n +   +++w+p+y ++ ++++++ + +  +lp++++f+  + +  ++ ++ + +                + l+++r + ++++l+++    ll++a+ +v     s+++  +l ++a  g g+ a    a+  dv  ++ +gl+ G+ n l  +++++ P v+g i + t G ++++
  MMETSP1061-20121228|17098_1  13 GMDTSQQAKLIAAPSVGNIFTQALGGSLINILPGGTKTAIAIGLAGLATGCTLLPLsirpqskspLLSKAFVLLATQGALFGAMFPSHSVLLSKWLTPNERGSAMAYGEIAMSAASMGVPVVVTSIAEYTAklsttsptspimgWRNGFYATGFACFSYLCVWVMLGRNEPDSCSyISKKELDLIHSVQTESVQAttngkqsD-KGDTATPLPWQRILLHPSILSLFLVHMLYNFVALSLNSWMPTYYNDVLQMNPKDSKVHIVLPQLAAFLVKLCVSKVALIVREVRkkqkrlshetvndersMILFSRRVMSCMGFLIMAiplwLLPMAVPSVLgssySPWLSTVLFSVALAGTGFhAESFRANYLDVT-EKHVGLVSGVGNCLSSVSAMCSPFVVGKIiKMTRGDWSPV 422
                  78888888889999999999999999999999877777888888888888888777778888554445556777777*******************************99999999877777777665555899********************************9999988652678888999998877776687644322.2224444456789*******************************************************9999999998875433347899**999999744444555555555444321111444444433344449***************995556666666655.6689**********************96516677877765 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   3.1   8.6e-19   8.8e-16      80     373 ..      76     415 ..      47     422 .. 0.80

  Alignments for each domain:
  == domain 1    score: 55.7 bits;  conditional E-value: 8.6e-19
    TIGR00881  80 ssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvv.............fivpgiiaiivslilllllrdspqsvg.lpkleelrnee.......keedkekkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDk.......................lfkgrrap.lavifma..liivsllvywlivaan.klvvlillfvlGflvyGpilligvaaselapkkaiGtaaglvglfaylggilaglplgyladlf 373
                  s+ l   ++lla +G + g+ +p    ll kw  ++erG+++a   i++  +   +p +v+++ia++  + ++             f+ +g+ +  +  ++++l+r++p s+  ++k e + +          +++ ++ +++ t+     q +l+++ +  + lv ++  +v + +++W+p+Y  ++++++ ++++v ++l+ la++   l    ++                         lf +r ++ +++++ma  l ++ ++v  +  + + +++   +lf++++ + G+ +    a    + +k +G+++g+ + ++++ ++ ++ ++g++++++
  MMETSP1061-20121228|17098_1  76 SPLLSKAFVLLATQGALFGAMFPSHSVLLSKWLTPNERGSAMAYGEIAMSAASMGVP-VVVTSIAEYTAKLSTtsptspimgwrngFYATGFACFSYLCVWVMLGRNEPDSCSyISKKELDLIHSvqtesvqATTNGKQSDKGDTATPLPWQRILLHPSILSLFLVHMLYNFVALSLNSWMPTYYNDVLQMNPKDSKVHIVLPQLAAFLVKLCVSKVALIvrevrkkqkrlshetvndersmiLFSRRVMScMGFLIMAipLWLLPMAVPSVLGS-SySPWLSTVLFSVALAGTGFHAESFRANYLDVTEKHVGLVSGVGNCLSSVSAMCSPFVVGKIIKMT 415
                  446777889999999999***************************************.6777777765444444455555555555********999999***********9746777777666666666666666677778888888999*********************************************************9999887766556688999*******76666666544444332244444442223333344444333.268999999***********99888777778999*****************************976 PP

>> TIGR00712  glpT: glycerol-3-phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.1   2.1e-10   2.1e-07     110     304 ..      68     283 ..      25     304 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.1e-10
    TIGR00712 110 lgllpwatss.iaimfvllflngwfqgmgwppcgrtmvhwfsksergtivsiwnvahnigggilaalvllgialfv.............vwkaalylpaiiaiivallvvllvrdtpqscglps......ieeyrndypdd.ynek.aekeltakeillqyvlknkllwyiaianvfvylvrygvldwspvylkevkhfaledsawayflyeyagip 304
                  l++ p + s  ++  fvll  +g + g  +p     + +w++ +erg+ ++  ++a     + ++ +v+ +ia ++              w++ +y  +++++    + v+l r+ p+sc   s      i   + +  +   n k  +k  ta  +  q +l    +  + +  ++  +v   +  w p+y ++v +++++ds+   +l ++a+  
  MMETSP1061-20121228|17098_1  68 LSIRPQSKSPlLSKAFVLLATQGALFGAMFPSHSVLLSKWLTPNERGSAMAYGEIAMSAASMGVP-VVVTSIAEYTaklsttsptspimGWRNGFYATGFACFSYLCVWVMLGRNEPDSCSYISkkeldlIHSVQTESVQAtTNGKqSDKGDTATPLPWQRILLHPSILSLFLVHMLYNFVALSLNSWMPTYYNDVLQMNPKDSKVHIVLPQLAAFL 283
                  455566666524668****************************************9998776554.455577777778999*******99**********9988877778888*******97661111114444444433313434367778899998998888887888888888889999999********************999999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.30
# Mc/sec: 1861.05
//
Query:       MMETSP1061-20121228|17100_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.8   2.1     0.0016   15.6   1.5    1.0  1  TIGR02794 tolA_full: protein TolA
     0.0036   12.8   1.1     0.0039   12.7   0.7    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   1.5   7.8e-07    0.0016      65     107 ..      38      88 ..      23      98 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7.8e-07
    TIGR02794  65 e..........pkpeepkqerqkkleqqaeeakkkqaaeqarqkelekqraaa 107
                  +          ++p+ + ++++++l++++ee+++++ a q++++el  qraa+
  MMETSP1061-20121228|17100_1  38 QadywrfieypENPNTNVKQKIQELAKEKEEQRAQRMAYQRQLQEL--QRAAK 88 
                  3344455545457888889999999999999999999999999999..44443 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.7   1.9e-06    0.0039     739     795 ..      37      93 ..      30     115 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.9e-06
    TIGR02169 739 rleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekie 795
                  ++++  + +++ e+  +++k++++el++e ee++++  +++ +l++l++  +++   
  MMETSP1061-20121228|17100_1  37 KQADYWRFIEYPENPNTNVKQKIQELAKEKEEQRAQRMAYQRQLQELQRAAKRSSSV 93 
                  6677888999999999*******************************9998887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       421  (0.102633); expected 82.0 (0.02)
Passed bias filter:                      318  (0.0775232); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 670.10
//
Query:       MMETSP1061-20121228|17099_1  [L=250]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-75  250.0   0.0    5.1e-75  249.7   0.0    1.1  1  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    1.5e-30  104.0   0.0    2.8e-30  103.1   0.0    1.4  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    1.3e-06   25.9   0.0    2.3e-06   25.0   0.0    1.3  1  TIGR03691 20S_bact_alpha: proteasome, alpha subunit
    1.7e-05   22.5   0.1    7.9e-05   20.3   0.1    1.8  1  TIGR03690 20S_bact_beta: proteasome, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.7   0.0     5e-78   5.1e-75       2     229 ..       7     240 ..       6     241 .. 0.93

  Alignments for each domain:
  == domain 1    score: 249.7 bits;  conditional E-value: 5e-78
    TIGR03633   2 aYDraitvfsPdGrlyqveYareavkrgttavGiktkegvvlivdkritsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvG.G......vrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakaleeelkaeevevavveveekkfrklskeevekll 229
                   YDr++  fsP+Grl+qveYa ea+k g+tavGi+tkeg vl+v+kr  s+ll+++s+eki +iD+h+gaa++GlvaDa++l+d arveaq + +tYdepi ve l+++v+dl   +     G       rPfGvall+aG dd  + +l+ +dPsG+++ yka aiGag+e +++ le++y+e ++l ea elal +l++++ee+++++++e+a v+ e   f+  ++eev+++l
  MMETSP1061-20121228|17099_1   7 EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAVGIQTKEGCVLAVEKRLSSPLLDPNSVEKIAEIDSHIGAAMSGLVADAKTLVDHARVEAQNHTFTYDEPIGVEPLTQAVCDLALSFGEGSdGdsskrmSRPFGVALLLAGYDDLeGSQLYFSDPSGTFVRYKAKAIGAGSEGAQSNLEESYSESMTLIEAEELALGTLKQVMEEKISMDNIELARVTPEG--FQIGKHEEVAAIL 240
                  5*****************************************************************************************************************9997532122333447************997589*********************************************************************9976..5555667776665 PP

>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   2.8e-33   2.8e-30       1     184 [.      34     227 ..      34     228 .. 0.90

  Alignments for each domain:
  == domain 1    score: 103.1 bits;  conditional E-value: 2.8e-33
    TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnll..........kss.kflpflvqllvgGvde.egpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdg 184
                  g+T+vGi++k+g vlA +kr+s   l+  ++v+K+ +id +i+ +++G+v+da++lv+  ++ea+   ++ +++i v+ l++ +  l           +s+    pf v ll++G+d+ eg++ly  Dp+G ++  k  a G+Gs+ a + Le++Y+e+++l ea++la+ ++k  +e + +s d+i+++ +t +g
  MMETSP1061-20121228|17099_1  34 GSTAVGIQTKEGCVLAVEKRLSS-PLLDPNSVEKIAEIDSHIGAAMSGLVADAKTLVDHARVEAQNHTFTYDEPIGVEPLTQAVCDLAlsfgegsdgdSSKrMSRPFGVALLLAGYDDlEGSQLYFSDPSGTFVRYKAKAIGAGSEGAQSNLEESYSESMTLIEAEELALGTLKQVME-EKISMDNIELARVTPEG 227
                  78*******************97.688999***********************************************9999888887622222222222231347************999*******************************************************998.57899********9988 PP

>> TIGR03691  20S_bact_alpha: proteasome, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   2.3e-09   2.3e-06      17     205 ..      24     221 ..      15     227 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 2.3e-09
    TIGR03691  17 aelarkGiargrsvvvlsyadGilfvaen.ps......aslhkiselydriafaavGkynefenlrraGvryadvrGysydr....rdvtar..alanvyaq.tlGavfteqekPyevelvvaevgeeteedqlyrltfdGsivderefvvlGGtaeqiaaalkesyeeelsladalrvavqalaaesekekrelkaasleva 205
                   e+a   i  g ++v +++++G ++  e   s      +s++ki+e+  +i+ a  G   + ++l       a  + ++yd     + +t     la  +   + G      ++P+ v l +a   ++ e +qly     G+ v  +   ++G  +e  ++ l+esy+e ++l +a ++a+ +l++     +++++++++e+a
  MMETSP1061-20121228|17099_1  24 VEYAIEAIKLGSTAVGIQTKEGCVLAVEKrLSsplldpNSVEKIAEIDSHIGAAMSGLVADAKTLVDHARVEAQNHTFTYDEpigvEPLTQAvcDLALSFGEgSDGDSSKRMSRPFGVALLLAGY-DDLEGSQLYFSDPSGTFVRYK-AKAIGAGSEGAQSNLEESYSESMTLIEAEELALGTLKQV---MEEKISMDNIELA 221
                  69999*****************98877762332222224789***********************9999999*********722222333321134444443134555666889********976.567899**********99765.5689999*****************************996...3445566666655 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.1   7.7e-08   7.9e-05       5     172 ..      34     206 ..      30     222 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 7.7e-08
    TIGR03690   5 gttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqveleh....yekieGv.plsleg..kanrlaamvrsnlaaal.qGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealy 172
                  g+t v ++ k+G +la ++r +   l+    vek+ + d +  ++++G ++ a  lv   +ve +     y+   Gv pl+ +    a  +++   ++ ++ + + + v  ll+Gyd  +++   + +   +g+  + + +++G+Gs  a++ l   y+e+++  +a ++a+ +l 
  MMETSP1061-20121228|17099_1  34 GSTAVGIQTKEGCVLAVEKRLS-SPLLDPNSVEKIAEIDSHIGAAMSGLVADAKTLVDHARVEAQNhtftYDEPIGVePLTQAVcdLALSFGEGSDGDSSKRMsRPFGVALLLAGYDDLEGS--QLYFSDPSGTFVRYKAKAIGAGSEGAQSNLEESYSESMTLIEAEELALGTLK 206
                  789999*************976.5789999****************************9999987513223332232144433200333344445566667772467888899****76544..4445555677889999***************************999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (250 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1374.89
//
Query:       MMETSP1061-20121228|17101_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1291.20
//
Query:       MMETSP1061-20121228|17102_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-38  130.6   0.0    1.2e-27   94.7   0.0    2.2  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    3.9e-30  102.8   0.0    5.9e-15   52.8   0.0    2.8  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
      1e-27   94.6   0.0    1.7e-16   57.6   0.0    2.3  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    6.9e-25   85.2   0.2    1.7e-15   54.3   0.1    2.1  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    6.2e-22   75.8   0.0    2.5e-14   50.7   0.0    2.2  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    3.2e-18   63.5   0.0    1.2e-13   48.5   0.0    2.4  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    1.3e-15   54.8   0.0    1.5e-08   31.5   0.0    2.2  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    8.9e-15   51.7   0.0    5.5e-13   45.8   0.0    2.2  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    1.3e-08   31.4   0.0    0.00025   17.2   0.0    2.1  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
  ------ inclusion threshold ------
      0.038   10.5   0.0        3.1    4.2   0.0    2.1  2  TIGR03335 F390_ftsA: coenzyme F390 synthetase


Domain annotation for each model (and alignments):
>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.1e-11   4.3e-09     111     217 ..     228     333 ..     183     339 .. 0.76
   2 !   94.7   0.0   2.9e-30   1.2e-27     240     381 ..     404     561 ..     374     565 .. 0.86

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.1e-11
    TIGR01923 111 sldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWLlsLPlyHvsGlsilfrallegatlkivdkfaaeqllesianekvthiSlVptqLkrlle 217
                  s  ++ t  +TSg+tG pK++  t++n      g+ + ++f ++d+ L+ LPl H+    +  ++ + g +++    +    l+e+++  + t   + p  L+++ +
  MMETSP1061-20121228|17102_1 228 SGRDVFTFCYTSGTTGDPKGALLTHENLISALAGIDQAFPFVSTDRHLSYLPLAHIFERIVQAQIYMAGSSIAFFRGDP-LLLIEDMQACRPTVFAAAPRVLNKIYD 333
                  45678899************************************************88777777777777777766644.556666666666777777777666655 PP

  == domain 2    score: 94.7 bits;  conditional E-value: 2.9e-30
    TIGR01923 240 lieeaqekglpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd................keghgeilvkganlmkgYlek.gelteaveeqGwlktgDlgeldgegfllvldRrddli.ISGGENiypeeiEkvlkslpevqeavvvp 381
                  +i   +  g+p+ ++yG TE a+  +t++ ++++   + vG p++  e+ ++                    +g geil++g++++kgY+++ ++ +ea++++Gwl++gD+g + ++g+l + dR+++++ +S GE + pe+iE+vl ++  + +a+v +
  MMETSP1061-20121228|17102_1 404 MIFYRIMLGIPVVEGYGQTENAAC-CTISLPTDMMTCGHVGIPMPASEVVLED-VpemgyfhtdtdhkgqpCQGRGEILIRGPTIFKGYYKQpDKTREAIDDEGWLHSGDIGLWTTDGNLQIIDRKKNIFkLSQGEYVAPEKIENVLIQSLLIGQAFVYG 561
                  56666789************9875.55666666667899************53.2469999999999999889******************98999*********************************988*************************987 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   1.6e-15   6.5e-13       1     197 [.      77     307 ..      77     342 .. 0.74
   2 !   52.8   0.0   1.4e-17   5.9e-15     207     409 .]     361     559 ..     340     559 .. 0.74

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.6e-15
    TIGR01733   1 tYreLderanrlAraLkeaggvrp...gdrV..avllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeelaeelaeval........eailleeleekaaedasaeeaaeak..........................skpddlayviyTSGStGkPKgVlvehrslvnllaslarryelseedrvlqfsslaFDlsveeiflallaGatlvvvpeeee 197
                  +Y e  +r n++A+ L++ + v p   +++V  +++++ ++e  ++  a++   +a vp+  +  +e +++il+++++k ++ +++   +l +v++         +il++   +k+a++ +ae+                               ++++d+ +  yTSG+tG+PKg l++h++l++ la   + + + ++dr l+  +la+ +  +      +aG ++++ + +  
  MMETSP1061-20121228|17102_1  77 SYTEVLARINAFAAGLETLNLVPPtkeDNMVllGLYMKNCMEWFIGEQAIFCVSGATVPFYDTLGPESVSFILQQTSTKTVVSTRAELGRLCAVKKsgkcpnfeVVILVN-GVTKEAASMAAEA----GlevmsfakveavgahridtqghkhrpPSGRDVFTFCYTSGTTGDPKGALLTHENLISALAGIDQAFPFVSTDRHLSYLPLAHIFERIVQAQIYMAGSSIAFFRGDPL 307
                  799999999999999998776544111445533789************************99999999***************999999988888777777664222222.2222222222222....133345666777888888888888888889999********************************999989******9999986666666666666666666655554 PP

  == domain 2    score: 52.8 bits;  conditional E-value: 1.4e-17
    TIGR01733 207 llaerkvtvlsltpsllellaeeaseelkslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeesee.e.pvpiG....rplanvrlyvldealrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKi.rGfRielgEieaalaelpgveeavv 409
                  l+a++++t+      l++ +++     ++ +r+v+ g   l a+ v  + + + ++ ++ +YG TE++ ++t+   ++ ++  +   p+p      + ++++ ++  d +++ +p +  GE++i+G+++ +GY+++p++t+e   + +        + ++GD++ ++ dG+l+++ R+ +  K+ +G  + ++ ie++l +   + +a v
  MMETSP1061-20121228|17102_1 361 LQATGQMTHGFYDRLLFHKIKKGLG--MDCVRQVVSGSAPL-AKNVMIFYRIMLGIPVVEGYGQTENAACCTISLPTDMMTCGHvGiPMPASevvlEDVPEMGYFHTDTDHKGQPCQGRGEILIRGPTIFKGYYKQPDKTREAIDD-EG-------WLHSGDIGLWTTDGNLQIIDRKKNIFKLsQGEYVAPEKIENVLIQSLLIGQAFV 559
                  4444444444444444555554442..45788888655555.55555555566679****************98877777766532544444111134566777778888999*****************************9733.33.......5679***********************956**************9999998876 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.6   0.0   4.1e-19   1.7e-16      27     215 ..      77     282 ..      63     312 .. 0.80
   2 !   34.5   0.0   4.3e-12   1.7e-09     348     469 ..     470     576 ..     461     585 .. 0.86

  Alignments for each domain:
  == domain 1    score: 57.6 bits;  conditional E-value: 4.1e-19
    TIGR03098  27 tyaaLseevkalasglkalglkrgeR......vaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledala..kchdlrtlilvdepekasekka...gaevlsweklkaleeaa......akvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredDrllavLPlsf 215
                  +y ++ ++++a+a+gl++l l    +       ++y++  +e  +   a   ++g+ vp    L  e v++il+ ++ k +v++++ l  l  +++  kc++++ +ilv+  +k+ ++ a   g+ev+s++k++a + +       ++ + +  d+ ++ YtsG tG Pkg +l+h+nl+     + q     + Dr l+ LPl+ 
  MMETSP1061-20121228|17102_1  77 SYTEVLARINAFAAGLETLNLVPPTKednmvlLGLYMKNCMEWFIGEQAIFCVSGATVPFYDTLGPESVSFILQQTSTKTVVSTRAELGRLCAVKKsgKCPNFEVVILVNGVTKEAASMAaeaGLEVMSFAKVEAVGAHRidtqghKHRPPSGRDVFTFCYTSGTTGDPKGALLTHENLISALAGIDQAFPFVSTDRHLSYLPLAH 282
                  788888999999999999887543321112223566666666666666788899********************************9999877654228********998766655544434599********9998776566343333456689*************************************************85 PP

  == domain 2    score: 34.5 bits;  conditional E-value: 4.3e-12
    TIGR03098 348 GsecapeeeGelvhrGalvakGYWndpektaerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemikts.GyRvsPteveevllatglvaeavvlgvpdpelGqaivlvvvesd 469
                  G+ c+    Ge+  rG+ + kGY+++p+kt e   +           e   +sGD++    +G l ++ R+ ++ k s G  v+P  +e+vl+++ l+ +a v g   ++l  a+v+++v+ +
  MMETSP1061-20121228|17102_1 470 GQPCQ--GRGEILIRGPTIFKGYYKQPDKTREAIDD-----------EGWLHSGDIGLWTTDGNLQIIDRKKNIFKLSqGEYVAPEKIENVLIQSLLIGQAFVYG---DSLQSALVAIIVPDE 576
                  55554..57*********************876644...........44589************************88799************************...778888888888544 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   2.1e-10   8.7e-08     193     297 ..     231     328 ..     224     389 .. 0.82
   2 !   54.3   0.1   4.1e-18   1.7e-15     315     465 ..     390     550 ..     382     561 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 2.1e-10
    TIGR03205 193 dvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfdvaavlrdieekratvfpgvptmw 297
                  dv  + yt gttg pkga+lth nl sa++  d           + +r +  lpl hi+   ++  +    g  i++  r d   ++ d++  r tvf   p + 
  MMETSP1061-20121228|17102_1 231 DVFTFCYTSGTTGDPKGALLTHENLISALAGIDQ-----AFPFVSTDRHLSYLPLAHIFER-IVQAQIYMAGSSIAFF-RGDPLLLIEDMQACRPTVFAAAPRVL 328
                  888899**********************986654.....3345567899**********86.5667888899999875.78999999***********9999764 PP

  == domain 2    score: 54.3 bits;  conditional E-value: 4.1e-18
    TIGR03205 315 atigsggaplpvevaklferkvglklksgwgmtetcspgtghplegpdkpgsiglmlpgiel...dv.....vslddpkkvlppgevgelrirgpnvtrgywnraeesaeafvgdrfl.tgdigyvdrdgyfflvdrkkdmi.isggfnvypqmieqaiye 465
                    + sg apl  +v  ++    g  +  g+g te ++  t   ++     g +g+ +p  e+   dv        d  +k  p    ge+ irgp + +gy+++++++ ea+ ++ +l +gdig   +dg + ++drkk++  +s g  v p+ ie+ + +
  MMETSP1061-20121228|17102_1 390 RQVVSGSAPLAKNVMIFYRIMLGIPVVEGYGQTENAACCTISLPTDMMTCGHVGIPMPASEVvleDVpemgyFHTDTDHKGQPCQGRGEILIRGPTIFKGYYKQPDKTREAIDDEGWLhSGDIGLWTTDGNLQIIDRKKNIFkLSQGEYVAPEKIENVLIQ 550
                  5688**************************************9***************9875334442211134577789999999*************************999888747********************864899*********998765 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.5e-08   6.2e-06     189     248 ..     224     283 ..      58     297 .. 0.68
   2 !   50.7   0.0   6.1e-17   2.5e-14     304     470 ..     381     559 ..     331     577 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.5e-08
    TIGR03208 189 gdrlspddvtqliytsgttgepkgvmhtantllsnilayaerlelgegdvilmaspmahq 248
                     +s  dv  + ytsgttg+pkg + t + l+s +    + + + ++d  l   p+ah 
  MMETSP1061-20121228|17102_1 224 HRPPSGRDVFTFCYTSGTTGDPKGALLTHENLISALAGIDQAFPFVSTDRHLSYLPLAHI 283
                  3346789*************************************************9996 PP

  == domain 2    score: 50.7 bits;  conditional E-value: 6.1e-17
    TIGR03208 304 esgepvsslktflcagapipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevkv..........idadgaklsagevgrllvraasnfggylkrphl..navdaegwfdtgdlafldaegyiriagrskdvi.irggenipvveieallykhpavaqvai 470
                  + g  +   +  +   ap+   ++   r +lg+ +v  +g ten a  ++ +  +   ++   g+p+p  ev +           d+d +  + +  g++l+r+ + f gy k+p+   +a+d egw+ +gd+   +++g ++i  r+k++  +  ge +   +ie++l +   + q  +
  MMETSP1061-20121228|17102_1 381 KKGLGMDCVRQVVSGSAPLAKNVMIFYRIMLGIPVVEGYGQTENAACCTISLPTDMMTCG-HVGIPMPASEVVLedvpemgyfhTDTDHKGQPCQGRGEILIRGPTIFKGYYKQPDKtrEAIDDEGWLHSGDIGLWTTDGNLQIIDRKKNIFkLSQGEYVAPEKIENVLIQSLLIGQAFV 559
                  45666677777888899******999********************99998887766555.67********9872222222222355666667777899****************853379*****************************974788****999*****999887777554 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.1e-05    0.0086      32     188 ..      77     257 ..      70     326 .. 0.65
   2 !   48.5   0.0   2.9e-16   1.2e-13     277     440 ..     386     562 ..     365     576 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.1e-05
    TIGR02262  32 sygeleaevrrvaaalrrlGv....kreervl..lvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvseellpvlk..evlaklpdleklvvvgakpagekqlaellateseqe................kaaatkaddpafwlyssGstGapkGvvhvhsnlrv 188
                  sy+e+ a+++  aa l +l +    k+++ vl  l +++ +++ i            v+    l  +   ++l+++ ++ v+ + + l  l   +  +k p+ e +++v    +   ++a++ + e+  +                k  +    d   + y+sG+tG pkG + +h nl+ 
  MMETSP1061-20121228|17102_1  77 SYTEVLARINAFAAGLETLNLvpptKEDNMVLlgLYMKNCMEWFIGEQAIFCVSGATVPFYDTLGPESVSFILQQTSTKTVVSTRAELGRLCavKKSGKCPNFEVVILVNGVTKEAASMAAEAGLEVMSFakveavgahridtqghKHRPPSGRDVFTFCYTSGTTGDPKGALLTHENLIS 257
                  6777777777777777777653331333334322346777777665443333333445556677888888888888888877776555444301346888888888877665544444444433333222000000000000000022333345666789****************99875 PP

  == domain 2    score: 48.5 bits;  conditional E-value: 2.9e-16
    TIGR02262 277 ekrlrlctsaGealpeevGkrwkarfGvdildGvGstellhiflsnlpdd.vkyGtsGkpvpGyrlrlvd..dggedvadge........vGellvsgpssaagywnnreksratfeGe.wtrsGdkyvrnddGsytyaGrtddllkvs.Giyvspfevesaliaheavleaavvga 440
                   + +r ++s   +l ++v   ++  +G+ +++G G te        lp d +  G  G p+p  ++ l d  + g   +d +         Ge+l+ gp+  +gy+++++k+r++   e w +sGd  +   dG+     r  +++k+s G yv+p ++e+ li+   + +a v g 
  MMETSP1061-20121228|17102_1 386 MDCVRQVVSGSAPLAKNVMIFYRIMLGIPVVEGYGQTENAACCTISLPTDmMTCGHVGIPMPASEVVLEDvpEMGYFHTDTDhkgqpcqgRGEILIRGPTIFKGYYKQPDKTREAIDDEgWLHSGDIGLWTTDGNLQIIDRKKNIFKLSqGEYVAPEKIENVLIQSLLIGQAFVYGD 562
                  67789999******************************9988777776551689***********999877677765554321122222269**********************997644***************************9879*************9887777777665 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   4.7e-08   1.9e-05     114     188 ..     201     276 ..     133     285 .. 0.75
   2 !   31.5   0.0   3.6e-11   1.5e-08     324     450 ..     457     577 ..     414     597 .. 0.80

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 4.7e-08
    TIGR01734 114 tevitlealeeieeekaeav.elekavkeddnyyiiytsGstGkPkGvqishdnLvsftnWiledfklseekqlln 188
                   ev++ +++e + +++ +++ ++++  ++ d +   ytsG+tG+PkG  + h+nL+s    i + f   +  + l+
  MMETSP1061-20121228|17102_1 201 LEVMSFAKVEAVGAHRIDTQgHKHRPPSGRDVFTFCYTSGTTGDPKGALLTHENLISALAGIDQAFPFVSTDRHLS 276
                  3477777777777766654414556779999*************************98888888887777776666 PP

  == domain 2    score: 31.5 bits;  conditional E-value: 3.6e-11
    TIGR01734 324 pdvnlfivdeeGeklsegekGeivivGdsvskGylnnpekteeaffeaegkrayrtGDagtieddgllfyqGrlDfqikl.nGyrieLedieanlkkskyikeavvvPkynkdekveaLiaavvakee 450
                  p++  f  d + +  +   +Gei+i G+++ kGy ++p+kt ea    +++   ++GD g  + dg l +  r     kl +G  +  e ie+ l +s  i +a v      d   +aL+a +v++ee
  MMETSP1061-20121228|17102_1 457 PEMGYFHTDTDHKGQPCQGRGEILIRGPTIFKGYYKQPDKTREAI---DDEGWLHSGDIGLWTTDGNLQIIDRKKNIFKLsQGEYVAPEKIENVLIQSLLIGQAFVYG----DSLQSALVAIIVPDEE 577
                  66667777777777788899***********************96...566678********************999999569999******************9854....4466789999998876 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.8   0.0    0.0075       3.1     178     237 ..     226     285 ..     168     315 .. 0.86
   2 !   45.8   0.0   1.4e-15   5.5e-13     368     453 ..     466     552 ..     386     585 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0075
    TIGR02275 178 etkadevaffqlsGGstGtpkliPrthddyaysvrrsveiceltqqtrylcalPaahnyp 237
                  + +  +v  f  + G+tG pk    th++ + ++    +   +    r+l+ lP ah + 
  MMETSP1061-20121228|17102_1 226 PPSGRDVFTFCYTSGTTGDPKGALLTHENLISALAGIDQAFPFVSTDRHLSYLPLAHIFE 285
                  45567888899999****************999999999999***************885 PP

  == domain 2    score: 45.8 bits;  conditional E-value: 1.4e-15
    TIGR02275 368 eegepvaeGeaGrlltrGPytirGyykaeehnakafdaeGfyitGdlvkltkeGyivveGrakdqin.rGGekiaaeeienlllkhp 453
                   + + ++    G +l+rGP  ++Gyyk+++   +a d+eG+  +Gd+   t++G + +  r+k+      Ge +a e+ien l++  
  MMETSP1061-20121228|17102_1 466 TDHKGQPCQGRGEILIRGPTIFKGYYKQPDKTREAIDDEGWLHSGDIGLWTTDGNLQIIDRKKNIFKlSQGEYVAPEKIENVLIQSL 552
                  444444445589***************************************************98773579**********998754 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.2e-05     0.009      91     261 ..      77     252 ..      72     275 .. 0.59
   2 !   17.2   0.0   6.2e-07   0.00025     361     534 ..     387     561 ..     376     579 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.2e-05
    TIGR02188  91 tYaellrevcrlanvlkelGv...kkgdr.va..iYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaeesvekvlvvkrtgeevaewkegrDvwweelvek.......easaecepekldsedplfiLYtsGstGkPkGvlhtt 261
                  +Y+e+l++++ +a+ l++l +    k d+ v   +Y+   +e  i  +a+  +   +   +    +e++   ++++++k+v+++  +l  g+ +++kk       k++ + e v++v+ + +e a++  +  + + +  +          ++ ++ ++ +  d+  + YtsG+tG PkG l t 
  MMETSP1061-20121228|17102_1  77 SYTEVLARINAFAAGLETLNLvppTKEDNmVLlgLYMKNCMEWFIGEQAIFCVSGATVPFYDTLGPESVSFILQQTSTKTVVSTRAEL--GRLCAVKKSG-----KCP-NFEVVILVNGVTKEAASMAAEAGLEVMSFAKVeavgahrIDTQGHKHRPPSGRDVFTFCYTSGTTGDPKGALLTH 252
                  6778888888888877776653333444413222577778888888888888877777777888888888888888888888765544..5555555442.....344.34555555555444444444333322222211001100111233444445567777789***********98665 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 6.2e-07
    TIGR02188 361 sslrvlgsvGepinpeaweWyyevvGkekcpivdtwWqtetGgilitplpgvatelkpgsatlPlfGieaevvd..eegkeveeeeeg.....gvLvikkpwPsmlrtiygdeerfvetYfkklkglyftGDgarrdkdGyiwilGRvDdvinvs.Ghrlgtaeiesalvsheavaeaavvg 534
                  + +r + s   p++ +   +y+ ++G   +p+v+ + qte  + +  +lp+    +  g    P++  e+++ d  e g   ++++++     g   i    P+++++ y+++++  e+  +  +g  ++GD     +dG ++i+ R  ++ ++s G  ++   ie+ l++   +  a v g
  MMETSP1061-20121228|17102_1 387 DCVRQVVSGSAPLAKNVMIFYRIMLG---IPVVEGYGQTENAACCTISLPTD--MMTCGHVGIPMPASEVVLEDvpEMGYFHTDTDHKgqpcqGRGEILIRGPTIFKGYYKQPDKTREAIDD--EGWLHSGDIGLWTTDGNLQIIDRKKNIFKLSqGEYVAPEKIENVLIQSLLIGQAFVYG 561
                  55666666677777777778887777...79*******************95..8899********99988877667776655333331334433335555699**********99998766..899***************************978999999********99999998876 PP

>> TIGR03335  F390_ftsA: coenzyme F390 synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0088       3.6      85     110 ..     229     254 ..     214     270 .. 0.88
   2 ?    4.2   0.0    0.0075       3.1     198     246 ..     385     429 ..     354     460 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0088
    TIGR03335  85 wkdiytihetsgtsgvpksffltwdd 110
                   +d++t   tsgt+g pk  +lt ++
  MMETSP1061-20121228|17102_1 229 GRDVFTFCYTSGTTGDPKGALLTHEN 254
                  579******************99876 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0075
    TIGR03335 198 gidpkessikrlvvggesfadesrayveelygvevyntygstegtmcge 246
                  g+d     ++++v g   +a++   + + + g++v + yg te + c  
  MMETSP1061-20121228|17102_1 385 GMD----CVRQVVSGSAPLAKNVMIFYRIMLGIPVVEGYGQTENAACCT 429
                  444....58999999999**************************99965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.40
# Mc/sec: 2217.42
//
Query:       MMETSP1061-20121228|17105_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-05   20.6  10.7    0.00035   17.5   0.0    2.1  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
      5e-05   19.8  12.1    5.6e-05   19.6   0.1    2.1  2  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    0.00085   16.4   0.0    0.00092   16.3   0.0    1.2  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
     0.0038   13.9   0.0      0.006   13.2   0.0    1.2  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0067   13.0   0.0     0.0097   12.5   0.0    1.2  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
  ------ inclusion threshold ------
      0.028   11.8   0.0      0.038   11.4   0.0    1.2  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   5.1e-07   0.00035     431     486 ..     101     159 ..      86     172 .. 0.77
   2 !    3.7   5.6    0.0079       5.4      25      75 ..     203     253 ..     198     310 .. 0.57

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 5.1e-07
    TIGR01622 431 DvkeEcskkggvvhiyvdkk...nsaGkvYlkfdsveaalaavkalngRyFagklitAa 486
                  D+  E sk g + + +v ++    + G+vY kf + e+a +a++a+ngR++ g+ +   
  MMETSP1061-20121228|17105_1 101 DMFLELSKFGRIDELHVCDNlgdHMIGHVYCKFFNEEDASDAMQAMNGRFYDGRKMEVE 159
                  56666677777666666544121567*************************99876655 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0079
    TIGR01622  25 ksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrresere 75 
                  +++e +R+r++d +r+r+++ d + ++   +  + +dr  +sr    +e e
  MMETSP1061-20121228|17105_1 203 AESELERRREEDDRRDRERDDDGHERGNAENAGNESDRDEKSRPAVTTEIE 253
                  455556666666666555555543333444444455555555544444443 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.1   8.2e-08   5.6e-05     433     504 ..      98     165 ..      83     170 .. 0.86
   2 !    3.3   4.7    0.0074       5.1      20      63 ..     204     245 ..     198     305 .. 0.63

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 8.2e-08
    TIGR01642 433 iledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedk 504
                   +ed+  e sk+G + ++++    +d+     +G v+ ++ ++++a+ A++ +nGr +++r + + f +   
  MMETSP1061-20121228|17105_1  98 FYEDMFLELSKFGRIDELHVCDNLGDHM----IGHVYCKFFNEEDASDAMQAMNGRFYDGRKMEVEFSPVTD 165
                  68999***************99988886....89***************************99888876555 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.0074
    TIGR01642  20 skeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsi 63 
                   +e +R+R+ d  rdR+Rd    +r   ++  +  ++ +d++s+
  MMETSP1061-20121228|17105_1 204 ESELERRREEDDRRDRERDDDGHERGNAENAGN--ESDRDEKSR 245
                  456667777666666666666666665554333..333333322 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.4e-06   0.00092     199     245 ..     106     152 ..      89     296 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.4e-06
    TIGR01628 199 FakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit 245
                   +kfG+i  + v+++  ++  g+ ++ + ++edA  A++++ng+  +
  MMETSP1061-20121228|17105_1 106 LSKFGRIDELHVCDNLGDHMIGHVYCKFFNEEDASDAMQAMNGRFYD 152
                  58999999999999999999999999999999999999999998776 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   8.8e-06     0.006     272     304 ..     129     161 ..     119     175 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.8e-06
    TIGR01648 272 afvhfedredavkamdelnGkeleGseievtla 304
                   +  f + eda +am+++nG+  +G ++ev ++
  MMETSP1061-20121228|17105_1 129 VYCKFFNEEDASDAMQAMNGRFYDGRKMEVEFS 161
                  577899***********************9875 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.4e-05    0.0097     535     595 ..     105     160 ..      93     169 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.4e-05
    TIGR01645 535 ecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvvaev 595
                  e +kfg +d + +  +  g      ++  ++ +f +  +++ a +a++Grf+ Grk+  e 
  MMETSP1061-20121228|17105_1 105 ELSKFGRIDELHVCDNL-G----DHMIGHVYCKFFNEEDASDAMQAMNGRFYDGRKMEVEF 160
                  56677777666554433.3....47889999999999*******************98875 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.5e-05     0.038     282     345 ..     100     161 ..      21     167 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.5e-05
    TIGR01661 282 deavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsfk 345
                  ++  l l ++fG + ++ +  +l  ++  G+ +    n ++a  a++++nG    +r + v f 
  MMETSP1061-20121228|17105_1 100 EDMFLEL-SKFGRIDELHVCDNL-GDHMIGHVYCKFFNEEDASDAMQAMNGRFYDGRKMEVEFS 161
                  4555554.89********99999.99999**********************9999999999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 1820.35
//
Query:       MMETSP1061-20121228|17104_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 2086.44
//
Query:       MMETSP1061-20121228|17103_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     6e-106  352.1   0.1   8.2e-106  351.7   0.0    1.1  1  TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit
    6.3e-20   68.9   0.0    3.1e-19   66.6   0.0    1.8  2  TIGR00470 sepS: O-phosphoseryl-tRNA(Cys) synthetase
    8.2e-17   58.8   0.0    6.6e-07   26.1   0.0    3.2  3  TIGR00469 pheS_mito: phenylalanine--tRNA ligase
    1.9e-05   21.3   0.0    3.8e-05   20.3   0.0    1.4  1  TIGR00499 lysS_bact: lysine--tRNA ligase
    0.00024   18.0   0.0    0.00049   17.0   0.0    1.4  1  TIGR00442 hisS: histidine--tRNA ligase
  ------ inclusion threshold ------
      0.016   12.4   0.0      0.034   11.3   0.0    1.6  1  TIGR02367 PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
      0.031   11.5   0.0      0.056   10.7   0.0    1.4  1  TIGR00462 genX: EF-P lysine aminoacylase GenX


Domain annotation for each model (and alignments):
>> TIGR00468  pheS: phenylalanine--tRNA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.7   0.0  1.4e-108  8.2e-106       4     321 ..     154     485 ..     149     488 .. 0.92

  Alignments for each domain:
  == domain 1    score: 351.7 bits;  conditional E-value: 1.4e-108
    TIGR00468   4 ellkklkkvkkeeekekliklikevkeeleeeltklkkellkaeaekklkfrkydvklpakkiasgklhpltkvieeikeiflelgftvekgpe.vetefynfdaLfiPqdHpaRdmqDtFylkdvad..........avkkaveegketgsrgwryefdeevarkllLRThtta...vqlraleeee..nppirifsigrvfRrdavdatHlpeFhQveglvvdknvslknLkglleeflkklfgetevrfrpsyfPfTepSvEvdvklvegkgWlEvlgaGivrpevlealGiekelkvlafGlgieRlamlkygikdiRdlyendlkflkq 321
                  ++lk+ k ++    k+++ +   ++  +  +++++l+ke+l ++++++ +f++y++ + ++k+  g lhpl kv+ e+++i++e+gf+++  ++ ve+ f+nfd+Lf+Pq+HpaRd +DtF++k+ a+          +vk+++e+g   gs+g+ry+f++e+a k lLRThtta    +l +l++++   +p r+fsi+rvfR++++datHl eFhQveg v+d+n+sl +L+g++e fl+k++  te+rf+p+++P+TepS+E++ +++  k+W E++++G++rpe+l+++G+ ++++v+a+Gl++eR +m+ky i++iRdl+ +++++ ++
  MMETSP1061-20121228|17103_1 154 KDLKRRKLISLVTLKSHKVTRGPQYAPQRVKKAADLTKEMLDSGSWQTTEFKPYNFLVLGEKVGGGYLHPLLKVRAEFRKILMEMGFQEMPTNKwVESSFWNFDSLFQPQSHPARDAHDTFFIKNPAEtisvpeeyyeRVKEMHEKG-GHGSIGYRYDFKKEEAFKNLLRTHTTAvssQMLYKLANQPggFKPARYFSIDRVFRNETMDATHLCEFHQVEGWVADYNLSLGDLIGTIETFLNKIGI-TELRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPENVRVIAWGLSLERPTMIKYRINNIRDLFGHKVEMART 485
                  456666666777778899999999999999999*********************************************************99988******************************6667889999996666666655.57*************************544455566666688799*****************************************************.6************************999*****************************************************998665 PP

>> TIGR00470  sepS: O-phosphoseryl-tRNA(Cys) synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.13        75      44      69 ..     219     244 ..     209     253 .. 0.86
   2 !   66.6   0.0   5.3e-22   3.1e-19     182     340 ..     318     475 ..     309     483 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.13
    TIGR00470  44 GkehplfetierlreaylrlGfsevv 69 
                  G  hpl++    +r+  +++Gf+e+ 
  MMETSP1061-20121228|17103_1 219 GYLHPLLKVRAEFRKILMEMGFQEMP 244
                  667*********************95 PP

  == domain 2    score: 66.6 bits;  conditional E-value: 5.3e-22
    TIGR00470 182 tltlrshmtsGwfitlssiadklk..lplklfsidrcfrreqkedasrlmtyfsascvvvdeevsvddGkavaeglleqlGfekfrfrkdekkskyyipetqtevyayhpklkewievatfGvyspialakydidve..vmnlGlGverlamilygyedvrkm 340
                  +  lr+h t+     l ++a++     p + fsidr fr e   da++l  ++     v d ++s+ d     e++l+++G++++rf++      y  p    e++ yhp lk+w e+   G++ p  l   +++ +  v+  Gl +er +mi y  +++r++
  MMETSP1061-20121228|17103_1 318 KNLLRTHTTAVSSQMLYKLANQPGgfKPARYFSIDRVFRNET-MDATHLCEFHQVEGWVADYNLSLGDLIGTIETFLNKIGITELRFKPAFN--PYTEP--SMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPENvrVIAWGLSLERPTMIKYRINNIRDL 475
                  55688888888777788887775322699*********9986.69*******************************************9754..45444..68******************************9865127899******************87 PP

>> TIGR00469  pheS_mito: phenylalanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00013     0.076      69     100 ..     247     278 ..     220     282 .. 0.80
   2 !   19.4   0.0   1.3e-07   7.3e-05     101     156 ..     318     374 ..     309     396 .. 0.88
   3 !   26.1   0.0   1.1e-09   6.6e-07     259     336 ..     401     479 ..     388     493 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00013
    TIGR00469  69 kpvvtvqenfdsllipkdhvsrsksdtyyine 100
                  k v +   nfdsl  p+ h++r+  dt++i +
  MMETSP1061-20121228|17103_1 247 KWVESSFWNFDSLFQPQSHPARDAHDTFFIKN 278
                  55667778*********************975 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1.3e-07
    TIGR00469 101 thllrahtsaheleliskilddsdniksg.flvsaevyrrdeidkthypvfhqaega 156
                  + llr+ht+a   +++ k  ++    k + ++ +  v+r + +d th   fhq+eg 
  MMETSP1061-20121228|17103_1 318 KNLLRTHTTAVSSQMLYKLANQPGGFKPArYFSIDRVFRNETMDATHLCEFHQVEGW 374
                  579*******************99999762566677*******************84 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 1.1e-09
    TIGR00469 259 vrwvdayfpftapswelevyfkd..ewlellGcGlirqevllraGvkqsetiGyafGlGlerlamllfeipdirllwsrd 336
                  +r+  a+ p+t+ps e+  y+ d  +w e+   G++r e+l+  G+ +  +   a+Gl ler +m+ + i +ir l+ + 
  MMETSP1061-20121228|17103_1 401 LRFKPAFNPYTEPSMEIFGYHPDlkKWTEIGNSGMFRPEMLRPMGLPEN-VRVIAWGLSLERPTMIKYRINNIRDLFGHK 479
                  6778899*************987558*******************9877.666899******************888665 PP

>> TIGR00499  lysS_bact: lysine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   6.5e-08   3.8e-05     242     289 ..     347     396 ..     339     417 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 6.5e-08
    TIGR00499 242 kvyEigrvFRnEGvdttHnpEFttiElYqa..yadyedllelteellktl 289
                  + + i+rvFRnE +d tH  EF  +E + a  + ++ dl+ + e++l+++
  MMETSP1061-20121228|17103_1 347 RYFSIDRVFRNETMDATHLCEFHQVEGWVAdyNLSLGDLIGTIETFLNKI 396
                  789***********************999832346779999999988776 PP

>> TIGR00442  hisS: histidine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.3e-07   0.00049      62     155 ..     308     401 ..     281     406 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 8.3e-07
    TIGR00442  62 mYsfedkggrslaLRpelTapvvRavvenklelkk..pfklyyigpvFRyErpqkGRyRqFhQldvevvGsespladaeiialaaelleelglkev 155
                   Y+f++++  +  LR   Ta    ++ +  ++     p ++++i++vFR+E   +  +++FhQ++  v   +  l   ++i  + ++l+++g++e+
  MMETSP1061-20121228|17103_1 308 RYDFKKEEAFKNLLRTHTTAVSSQMLYKLANQPGGfkPARYFSIDRVFRNETMDATHLCEFHQVEGWVADYNLSL--GDLIGTIETFLNKIGITEL 401
                  58899999999999999999888877665555444459*************************875444444333..4467777777777777765 PP

>> TIGR02367  PylS_Cterm: pyrrolysine--tRNA ligase, C-terminal region
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.8e-05     0.034     103     226 ..     344     473 ..     321     481 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.8e-05
    TIGR02367 103 kpirifeiGscyrkesdGsehleeftmlnlvelGspeeerrerleelikevleelGideyele......adesv.vyGdtvdvmkgdlel.ssavlGpifldrkwgvvk..pwvGlGfGlerllkvredtknvr 226
                  kp r f i   +r e+  + hl ef  ++   + +  +     l   i+++l+++Gi e +++      ++ s+ ++G   d+ k   e+  s+++ p +l    g+ +    +  G+ ler  +++  ++n+r
  MMETSP1061-20121228|17103_1 344 KPARYFSIDRVFRNETMDATHLCEFHQVE--GWVADYNLSLGDLIGTIETFLNKIGITELRFKpafnpyTEPSMeIFGYHPDLKKWT-EIgNSGMFRPEMLR-PMGLPEnvRVIAWGLSLERPTMIKYRINNIR 473
                  899**********************9886..455555777888889999********997765111111333333555555544433.33145666666663.3344331134566666777777777777766 PP

>> TIGR00462  genX: EF-P lysine aminoacylase GenX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.5e-05     0.056      75     123 ..     347     397 ..     343     435 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.5e-05
    TIGR00462  75 kifqlakvfRneergrlHnpEFtmLEwYrvga..dleelmeeveellqevl 123
                  + f++ +vfRne + ++H  EF+ +E + +++  +l +l+  +e++l+++ 
  MMETSP1061-20121228|17103_1 347 RYFSIDRVFRNETMDATHLCEFHQVEGWVADYnlSLGDLIGTIETFLNKIG 397
                  5699**********************6665541156688888888887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1712.47
//
Query:       MMETSP1061-20121228|17108_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2001.83
//
Query:       MMETSP1061-20121228|17107_1  [L=766]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-05   20.3   0.0    6.6e-05   19.6   0.0    1.2  1  TIGR01268 Phe4hydrox_tetr: phenylalanine-4-hydroxylase
     0.0027   14.8   0.0     0.0041   14.2   0.0    1.2  1  TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
      0.008   12.8   0.0      0.013   12.1   0.0    1.2  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
  ------ inclusion threshold ------
      0.012   12.2   0.0       0.03   10.9   0.0    1.6  2  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01268  Phe4hydrox_tetr: phenylalanine-4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   6.4e-08   6.6e-05      15      67 ..     272     324 ..     262     343 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 6.4e-08
    TIGR01268  15 aklslifslkeeagalaevlklfkekdvnlthiesrpskskegeyeffvelde 67 
                  +k+s++f+l + agal ++l+ f  +d+++++iesrp+ +   +y  f + ++
  MMETSP1061-20121228|17107_1 272 SKTSVVFTLPNTAGALYKALACFSLRDIDFSKIESRPTSAALLNYLKFRKSQQ 324
                  689**********************************9887777766655544 PP

>> TIGR00872  gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     4e-06    0.0041       2      91 ..     425     510 ..     424     525 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 4e-06
    TIGR00872   2 klgliGlGrmGaniakrlakrghevvgydrdqdaveelkedraegvanlkellkrlsaprvvwvmvpagivdavleelapllekGdivid 91 
                  ++gl+G+G  G  +a r+++ +hev   d ++++ e++k     gv   ++ ++ +    vv + vp    ++ ++ l     +G +v+d
  MMETSP1061-20121228|17107_1 425 RIGLVGFGSFGQVLAARMIDDNHEVSCLDMNDKSEEAAK----LGVDFHYDATNFFRGLDVVVISVPLIRLQEAVDSLPIHELRGKLVVD 510
                  79****************************998887765....45666666666667777777777776666666666555555666655 PP

>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.2e-05     0.013     140     203 ..     425     488 ..     418     496 .. 0.95

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.2e-05
    TIGR01327 140 tlGviGlGriGsevakrakalgmkvlayDPyiseekaeklgvellkdldellaeaDvitvHvPl 203
                   +G++G+G  G+ +a r+   + +v   D    +e a+klgv+   d  ++++  Dv+ + vPl
  MMETSP1061-20121228|17107_1 425 RIGLVGFGSFGQVLAARMIDDNHEVSCLDMNDKSEEAAKLGVDFHYDATNFFRGLDVVVISVPL 488
                  58*************************************************************8 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.38   3.9e+02     195     222 ..      41      68 ..      35      77 .. 0.83
   2 ?   10.9   0.0   2.9e-05      0.03       2      35 ..     425     458 ..     424     472 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.38
    TIGR03026 195 vvlvtsietAeliKlaeNtfravkiafi 222
                  + ++t  +t+  +K ++Nt +++++a+ 
  MMETSP1061-20121228|17107_1  41 PRPFTTRTTTSNAKTTSNTALHLRVAYQ 68 
                  5677888899999************985 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 2.9e-05
    TIGR03026   2 kiavvGlGYvGlplaallaekgheVvgvDidkek 35 
                  +i  vG G  G +laa + +  heV ++D++++ 
  MMETSP1061-20121228|17107_1 425 RIGLVGFGSFGQVLAARMIDDNHEVSCLDMNDKS 458
                  6999**************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (766 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 2973.64
//
Query:       MMETSP1061-20121228|17110_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-21   74.3   0.0    1.5e-17   61.4   0.0    2.3  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.3e-19   67.9   0.0    2.2e-18   63.8   0.0    2.0  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    1.7e-16   57.0   0.0    2.9e-16   56.2   0.0    1.3  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    9.3e-13   45.1   0.0    1.3e-10   38.0   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    4.3e-09   33.4   0.0    8.7e-09   32.4   0.0    1.4  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    1.8e-07   28.4   0.0    6.2e-07   26.7   0.0    1.8  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    0.00089   15.4   0.0     0.0017   14.4   0.0    1.4  1  TIGR00631 uvrb: excinuclease ABC subunit B
     0.0026   14.8   0.2       0.06   10.3   0.0    2.2  2  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
      0.007   12.5   0.0      0.012   11.8   0.0    1.3  1  TIGR00580 mfd: transcription-repair coupling factor
     0.0083   13.0   0.0        0.7    6.6   0.0    2.2  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
  ------ inclusion threshold ------
      0.036   10.1   0.0      0.055    9.6   0.0    1.2  1  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
      0.038   10.0   0.0       0.38    6.7   0.0    2.1  2  TIGR00963 secA: preprotein translocase, SecA subunit
      0.044    9.8   0.0      0.044    9.8   0.0    2.6  4  TIGR03714 secA2: accessory Sec system translocase SecA2


Domain annotation for each model (and alignments):
>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00013      0.04      13      46 ..      86     119 ..      74     125 .. 0.87
   2 !   61.4   0.0   4.8e-20   1.5e-17      52     333 ..     147     438 ..     139     483 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00013
    TIGR00614  13 rpvqlevinavlegrdalvvmatGgGksLCyqlp 46 
                   +vq ++  a+++g+d++ v  tG Gk L + lp
  MMETSP1061-20121228|17110_1  86 SQVQSKAWPAAISGKDVIAVAKTGSGKTLGFLLP 119
                  578999*************************998 PP

  == domain 2    score: 61.4 bits;  conditional E-value: 4.8e-20
    TIGR00614  52 gltlvisPLisL...m.eDqvlqLkasdisatlLnsaqskeeakevladlkdgklkllYvtPekvsksksllqkle....erkkltliavDeahCisqWGhDfRsdykalgsLkqklPsvpviaLtatasssvreDilklLklkkpqvtitsfdRpnlkyeveekkskiledllkfiv..........kefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapa 333
                   ++lv+sP + L   + ++ ++     +i++t+L +    +e     ++l++   +++  tP +++     l++ +      k   ++++Dea  + + G  f ++ k++      + s   +  tat  ++vr+ + k ++ ++++ +  +    +  +  ++   +i  + +  ++           +++ +s +i+ +++++v+ va+   ++g ++ + h + ++++r+   +kf+  e+ ++vat     G++   v +vi ++++++ +sY   +GR GR g+  e++ f++p 
  MMETSP1061-20121228|17110_1 147 PIGLVVSPTRELaiqIhKECIKFGSPIGITSTCLYGGTNANE---QIQELRKLSPQIVIATPGRLCDL---LDRTNpcclTLKSCHFVVLDEADRMLDMG--FEPQLKQITAALPPISSRQTLFFTATWPKAVRKVAAKFMRSEETMEIFLGEGTADGELVANKSIKQIFIEAQDDVKderlynllctLDYDKASVVIFANTKRRVDYVAKLFWQEGFSTCSVHGDKQQHERDAALRKFISKECSILVATDVAARGLDIKGVTHVINFDMARDCDSYVHRIGRTGRAGEVGEAITFWNPD 438
                  588999998777222213344444567899999987776663...34577777888999999999864...55555555566677778889999999988..77877777666666666678889999999999999999988877666555544444443333333444444444444444555667899999********************************************************9999*******************************************985 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.043        14      18      49 ..      89     120 ..      76     126 .. 0.81
   2 !   63.8   0.0     7e-21   2.2e-18      55     330 ..     148     437 ..     143     485 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.043
    TIGR01389  18 qeeiieevldgrdvlavlPtGGGkslCYqvPa 49 
                  q +   + ++g+dv+av  tG Gk l + +P 
  MMETSP1061-20121228|17110_1  89 QSKAWPAAISGKDVIAVAKTGSGKTLGFLLPI 120
                  5555566789****************999985 PP

  == domain 2    score: 63.8 bits;  conditional E-value: 7e-21
    TIGR01389  55 ltvvisPL....isLmkDqvdqLraaGveaaalnstlsakeaqeilkalaagelklLYvaPerleq...dkflellerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadaevredivekLelkdaaefv..ssfdRenla........fsvvkkenkkkqlleylkkere..ksGiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyse 330
                  +++v+sP     i + k+ ++     G+++++l  +++a+e+ + l++l   + +++  +P rl     ++    l+  + +++ +Dea  +   G  F p+ k+++       ++  + +tat  ++vr+  ++ ++ +++ e+   ++++  +l+        f   ++  k++ l + l + +    s +i+a+++++v+ +a+   ++g+++   h+  ++++R+ a++kF+ ++  ++vat     G+d   v +vi +d+ ++ +sy    GR GR G+  eai+++++
  MMETSP1061-20121228|17110_1 148 IGLVVSPTrelaIQIHKECIKFGSPIGITSTCLYGGTNANEQIQELRKL---SPQIVIATPGRLCDlldRTNPCCLTLKSCHFVVLDEADRMLDMG--FEPQLKQITAALPPISSRQTLFFTATWPKAVRKVAAKFMRSEETMEIFlgEGTADGELVanksikqiFIEAQDDVKDERLYNLLCTLDYdkASVVIFANTKRRVDYVAKLFWQEGFSTCSVHGDKQQHERDAALRKFISKECSILVATDVAARGLDIKGVTHVINFDMARDCDSYVHRIGRTGRAGEVGEAITFWNP 437
                  5677777422235556666666777888888888887777765555544...5567788899986411144445788899999*******999998..89*****************************9999999999998887623344443332111111112223344455556666654332238899**************************************************************************************************9976 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0     9e-19   2.9e-16       9     346 ..      79     425 ..      71     435 .. 0.76

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 9e-19
    TIGR04121   9 argwe.prafQkevleaaeegesglliapTGaGKTlavflpsliela.............akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssser.arqrkkppdiLltTpEslaLllsskd.aeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeek.eekaklvkakekkalevesllpeeeeklPwa..Ghlglkaleevleeikk.arttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHr 346
                  + g++ p + Q +++ aa +g++ + +a TG+GKTl   lp+  ++              ++++++ +   l ++P + La +i++   +  + +g++ +     G t+++e+ ++ rk  p+i++ Tp  l  ll +++    ++k+++ vv+DE   +l      +l+   a L  ++ + +++  +AT   ++++++v ++  + ee+ ++  +  +++++ e + +++ +++       +  + l ++l +++  + ++++F Nt+ + +++ + +++            Hg  ++++R+   +++ + +  ++v+T     G+D + v  vi+   ++     + RiGR++ +
  MMETSP1061-20121228|17110_1  79 TAGFKvPSQVQSKAWPAAISGKDVIAVAKTGSGKTLGFLLPIFHRISkgdlpdgattetlKTRASTPSPIGLVVSPTRELAIQIHKECIKFGSPIGITSTC--LYGGTNANEQiQELRKLSPQIVIATPGRLCDLLDRTNpCCLTLKSCHFVVLDEADRMLDMGFEPQLKQITAALPPISSR-QTLFFTATW--PKAVRKVAAKFMRsEETMEIFLG--EGTADGELVANKSIKQIFIEaqDDVKDERLYNLLCTLDYdKASVVIFANTKRRVDYVAKLFWQEGFS----TCSVHGDKQQHERDAALRKFISKECSILVATDVAARGLDIKGVTHVINFDMARDCDSYVHRIGRTGRA 425
                  5566535789************************************999999988776543333334555699*************999999998887665..446666665526778889***********98887766156789***************998888888777777777654.555566665..56666666665552233344433..4444444555555555544400445666777888888761567789***********9999987665....45569***********************************************************9854 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.0   4.1e-13   1.3e-10      22     167 ..      70     234 ..      54     240 .. 0.85
   2 !    5.0   0.0    0.0041       1.3     316     375 ..     368     427 ..     318     439 .. 0.81

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 4.1e-13
    TIGR03817  22 epdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.................pratalylaPtkalaadqlravkelee.rdvra.atydGdtpaeerewireka.ryvltnPdmlhlgilpsharWakflralryvvvdech 167
                  ++ +++al++aG + p q q +a  +a +G++v+  + t sGk+l++llP++ ++++                  p    l ++Pt+ la    + + ++ +  ++ + + y G  ++e+ + +r+ + ++v++ P  l   +l   +  +  l++ ++vv+de+ 
  MMETSP1061-20121228|17110_1  70 DKPIKTALSTAGFKVPSQVQSKAWPAAISGKDVIAVAKTGSGKTLGFLLPIFHRISKGdlpdgattetlktrastPSPIGLVVSPTRELAIQIHKECIKFGSpIGITStCLYGGTNANEQIQELRKLSpQIVIATPGRLC-DLLDRTNPCCLTLKSCHFVVLDEAD 234
                  5668899*************************************************998888888887777777668899************9999999988656655156777777777788888663789999*9996.688888999999***********96 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.0041
    TIGR03817 316 edrreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgq 375
                   +r +  r++ + e   ++at+    G+di G+  v+         s+  ++Gr+Gr+g+
  MMETSP1061-20121228|17110_1 368 HERDAALRKFISKECSILVATDVAARGLDIKGVTHVINFDMARDCDSYVHRIGRTGRAGE 427
                  455555666667778889999999**********************************97 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   2.8e-11   8.7e-09     289     556 ..     151     428 ..     145     442 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 2.8e-11
    TIGR00643 289 lmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqekve........fkeLalviiDEQhrF...Gve.QRkkLrekgkekiaphvLvmsATPIPRtlAltvygdldvsiidelPlGrkpittklikekekdkvyevveeeikkgrqvyvvypl.ieeseklelkaaealleelkkaf..pklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekk 556
                  ++ PT  LA Q  +++ ++ +p+gi+ + L g ++++++ + l +++    ++v+ T   l +  +        +k+  +v+ DE  r    G e Q k++++      + ++L+++AT  P+++   +  ++      e+ lG      +l+ +k+ ++++   ++++k++r   ++++l  ++   +  ++ +  + ++ k f  + ++   +hg  +++e++++l++F +ke++iLvaT v   G+d+  +t ++  d  R   s  H + GR gR  + 
  MMETSP1061-20121228|17110_1 151 VVSPTRELAIQIHKECIKFGSPIGITSTCLYGGTNANEQIQELRKLS---PQIVIATPGRLCDLLDrtnpccltLKSCHFVVLDEADRMldmGFEpQLKQITAALPPISSRQTLFFTAT-WPKAVRKVAAKFMRSEETMEIFLGEGTADGELVANKSIKQIFIEAQDDVKDERLYNLLCTLdYDKASVVIFANTKRRVDYVAKLFwqEGFSTCSVHGDKQQHERDAALRKFISKECSILVATDVAARGLDIKGVTHVINFDMARDCDSYVHRI-GRTGRAGEV 428
                  678*******************************9999988888888...899999988776654422233333788899*******964336654667777777766999********.5999988888889999999******************************9988888888873345555678899999*******99445777889*************************************************999999998.999998665 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.93   2.9e+02       2      22 ..     102     122 ..     101     129 .. 0.74
   2 !   26.7   0.0     2e-09   6.2e-07     127     321 ..     227     427 ..     181     449 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.93
    TIGR01587   2 lvieAPtGyGKteaallwalk 22 
                  ++ +A tG+GKt   ll   +
  MMETSP1061-20121228|17110_1 102 VIAVAKTGSGKTLGFLLPIFH 122
                  567899******776665555 PP

  == domain 2    score: 26.7 bits;  conditional E-value: 2e-09
    TIGR01587 127 vliiDEvhayeeytkalllallevlk..dvdvkillmsAtlpkllkeylekielveenealdlke.......ekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDis..vdvlitela.pidsLiQRlGRlaRygr 321
                   +++DE++ + +   +  l+ + ++       + l  +At pk +++ + k    ee     l e          +++++i ++++d++++++  + l     ++++v+i++Nt +r  ++ + +  ++       +H+  ++++r       l+++ ++e  ++vaT v+  +lDi     v+  ++a   ds + R+GR  R g+
  MMETSP1061-20121228|17110_1 227 FVVLDEADRMLDMGFEPQLKQITAALppISSRQTLFFTATWPKAVRKVAAKFMRSEETMEIFLGEgtadgelVANKSIKQIFIEAQDDVKDERLYNLLCTLDYDKASVVIFANTKRRVDYVAKLFWQEGFS--TCSVHGDKQQHER----DAALRKFISKECSILVATDVAARGLDIKgvTHVINFDMArDCDSYVHRIGRTGRAGE 427
                  588999988777655553333333333445667899******9999888888777766666666678888886677799999**************7788888999***********99999999866665..6778885444444....456************************8434566668773589********999665 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   5.5e-06    0.0017     442     548 ..     330     432 ..     306     439 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.5e-06
    TIGR00631 442 knervlvttltkkmaedltdylkelgikvkylhseidtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailDadkeGflrsersLiqtiGraarnve.Gkvi 548
                   +  v++ + tk+  + +++ + + g  +  +h + +  er   +r++  +e+ +lv  ++   GlD+  v+ v  +D     + r+  s +  iGr  r  e G++i
  MMETSP1061-20121228|17110_1 330 DKASVVIFANTKRRVDYVAKLFWQEGFSTCSVHGDKQQHERDAALRKFISKECSILVATDVAARGLDIKGVTHVINFD-----MARDCDSYVHRIGRTGRAGEvGEAI 432
                  4567889999****************************************************************9999.....5799999999999999964326655 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.051        16      17      37 ..     102     122 ..      96     129 .. 0.86
   2 !   10.3   0.0   0.00019      0.06     272     356 ..     331     422 ..     292     423 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.051
    TIGR03158  17 llntAptGaGKtlaalvevls 37 
                  ++  A tG+GKtl  l+++ +
  MMETSP1061-20121228|17110_1 102 VIAVAKTGSGKTLGFLLPIFH 122
                  5678************99877 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00019
    TIGR03158 272 gergaiildslaevkrlsellreqelglqvgritGlakkkekeral......sfdillgtsavdvGvdFktd.fli.Fs.asdaaeFlqRlGRl 356
                  +   +i  ++   v+ + +l+ +++ +   +   G ++++e++ al      ++ il++t     G+d k+  ++i F+ a+d  +++ R+GR 
  MMETSP1061-20121228|17110_1 331 KASVVIFANTKRRVDYVAKLFWQEGFS--TCSVHGDKQQHERDAALrkfiskECSILVATDVAARGLDIKGVtHVInFDmARDCDSYVHRIGRT 422
                  3344455577889********966555..8999999999988876422222279***************9755555475599***********6 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   3.8e-05     0.012     688     734 ..     359     405 ..     355     434 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.8e-05
    TIGR00580 688 aiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiii 734
                  + +Hg  +++e +  + +F++ke  +Lv+T +   G+di  +  +i 
  MMETSP1061-20121228|17110_1 359 CSVHGDKQQHERDAALRKFISKECSILVATDVAARGLDIKGVTHVIN 405
                  668************************************98876664 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0022       0.7      23     119 ..      97     208 ..      85     251 .. 0.71
   2 ?    4.0   0.0     0.014       4.3     296     382 ..     339     424 ..     299     432 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0022
    TIGR04095  23 nngrGilkma.tGtGktltaLalvskl.................aekikslvvvvvvPykhLveqWakeaekFglepilayesvsrWqkelsekleelsskakkllliittnatl 119
                   +g+ ++++a tG+Gktl  L  + +                    ++ s + +vv P ++L+ q  ke+ kFg +pi   +      ++++e+++el+  +    ++i+t   l
  MMETSP1061-20121228|17110_1  97 ISGKDVIAVAkTGSGKTLGFLLPIFHRiskgdlpdgattetlktRASTPSPIGLVVSPTRELAIQIHKECIKFG-SPIGITSTCLYGGTNANEQIQELRKLS--PQIVIATPGRL 208
                  4788888887799999999988776655888999988877665333334455699******************9.688888887777788888888865544..44556655554 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.014
    TIGR04095 296 eeerqidevvkllgeelglrvktftaeeskeeReellkqfesgelqalvairCLDeGvDvPairtayiLasssnPrqFiqRRGRvLR 382
                  +++r++d v kl  +e   +++     ++++eR+  l++f s+e   lva      G+D+  + + +    + +   ++ R GR  R
  MMETSP1061-20121228|17110_1 339 NTKRRVDYVAKLFWQEGFSTCSV-HGDKQQHERDAALRKFISKECSILVATDVAARGLDIKGVTHVINFDMARDCDSYVHRIGRTGR 424
                  56777888877777665555544.45677899****************************999999888888889999999888765 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00017     0.055     206     295 ..     327     412 ..     304     423 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00017
    TIGR01970 206 laeesgsvLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdraikpaaaGrrkvvLatniaetsltieGvrvviDsglarva 295
                  l  +  sv++f   ++ +  v++       +   + c ++G+ + +++d+a++   +    + +at++a   l i+Gv  vi+  +ar  
  MMETSP1061-20121228|17110_1 327 LDYDKASVVIFANTKRRVDYVAKLFW----QEGFSTCSVHGDKQQHERDAALRKFISKECSILVATDVAARGLDIKGVTHVINFDMARDC 412
                  55566677777776666666665544....345679**********************************************99999964 PP

>> TIGR00963  secA: preprotein translocase, SecA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.073        23      67      91 ..      97     121 ..      83     126 .. 0.85
   2 ?    6.7   0.0    0.0012      0.38     438     471 ..     364     398 ..     329     486 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.073
    TIGR00963  67 vlhkgkiaEmktGEGktLvavlpay 91 
                  +  k+ ia  ktG GktL  +lp +
  MMETSP1061-20121228|17110_1  97 ISGKDVIAVAKTGSGKTLGFLLPIF 121
                  556788999*********9999875 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.0012
    TIGR00963 438 ak.nherEaeiiaqaGkkgavtiatnmAGRGtDik 471
                   k +her+a + +   k+ ++ +at++A RG Dik
  MMETSP1061-20121228|17110_1 364 DKqQHERDAALRKFISKECSILVATDVAARGLDIK 398
                  45599*****************************8 PP

>> TIGR03714  secA2: accessory Sec system translocase SecA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.0   1.8       4.3   1.3e+03     562     584 ..       5      27 ..       1      49 [. 0.39
   2 ?   -1.7   0.0      0.41   1.3e+02      87     105 ..     103     121 ..      95     127 .. 0.85
   3 ?   -1.2   0.0      0.31        97     193     213 ..     222     241 ..     211     298 .. 0.75
   4 ?    9.8   0.0   0.00014     0.044     422     529 ..     329     430 ..     301     438 .. 0.72

  Alignments for each domain:
  == domain 1    score: -5.0 bits;  conditional E-value: 4.3
    TIGR03714 562 kekekallkrrvrkivekaqras 584
                  k+kek+ +k+++++ ve a ++s
  MMETSP1061-20121228|17110_1   5 KKKEKKEKKKKYKSKVETAVEKS 27 
                  22222223333333333332222 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.41
    TIGR03714  87 iaemktGeGktLtatmplY 105
                  ia  ktG GktL   +p++
  MMETSP1061-20121228|17110_1 103 IAVAKTGSGKTLGFLLPIF 121
                  8889********9999886 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.31
    TIGR03714 193 lrklnyvivDevDsvlLDaaq 213
                  l++ ++v++De+D + LD+  
  MMETSP1061-20121228|17110_1 222 LKSCHFVVLDEADRM-LDMGF 241
                  7899*********96.56654 PP

  == domain 4    score: 9.8 bits;  conditional E-value: 0.00014
    TIGR03714 422 ekgqPvLlitgsvelselysklLlkegiphnvLna..qnvakeaqiiaeaGqkgavtvatslaGrGtDikLgkgvkelGGLavigtermensrvdlqlrGrsGrqGDpGl 529
                    +  v++++ + +  ++ +kl  +eg +   +    q+  ++a + +   ++ ++ vat +a rG Dik            vi  ++  +        Gr+Gr G+ G 
  MMETSP1061-20121228|17110_1 329 YDKASVVIFANTKRRVDYVAKLFWQEGFSTCSVHGdkQQHERDAALRKFISKECSILVATDVAARGLDIKGVTH--------VINFDMARDCDSYVHRIGRTGRAGEVGE 430
                  5667899999999999***********9998887611455677999999********************93333........3444433332222333466666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.33
# Mc/sec: 1955.84
//
Query:       MMETSP1061-20121228|17109_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.1e-260  860.8   9.6   9.9e-260  860.5   6.7    1.1  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
   3.6e-152  505.6  13.2   4.4e-152  505.3   9.2    1.1  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   6.6e-130  431.9  10.5     9e-130  431.4   7.3    1.1  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
   2.3e-109  364.1   8.1   2.8e-109  363.8   5.6    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
   2.5e-105  350.6   7.1   3.4e-105  350.1   4.9    1.1  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   4.5e-103  343.6   9.8     6e-103  343.2   6.8    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    5.8e-95  316.7   9.8    7.1e-95  316.4   6.8    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    6.4e-92  306.6   9.0      8e-92  306.3   6.2    1.1  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    2.1e-90  301.5   7.8    2.8e-90  301.1   5.4    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    9.8e-19   65.0  13.4    6.4e-17   59.0   1.7    3.3  3  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  860.5   6.7  2.4e-262  9.9e-260       2     531 ..       3     549 ..       2     550 .. 0.96

  Alignments for each domain:
  == domain 1    score: 860.5 bits;  conditional E-value: 2.4e-262
    TIGR02343   2 lafdelGrpfiiikdqdkkkrlkGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttk....drllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcl.........eeGt....ndmkelkvletligkkqqillatqlvkmilkiddvisd 531
                  +++de+Grpf+i+k+q+ k+r+kG+ea+ksni+aa++++silrtslGpkG+dk+l+s+dgd+t+tndGatil++m++++++a+l+vels sqd+eiGdGttgvvvla++lleqae ll+kGihp++ia Gfe a++va+e+l +i+e+++++++n e+ll +akt+l ski++  k+++a+iav+a+l vadler+dv+fd+i++egk+Ggsl dtkl++G+++dk++shpqm+  v++ak+ iltcp+eppkpktkhkl+i+s+e y++l+++e+e+f++mi++ik+sGanlvicqwGfddeanhlllq++lpavrwvgG+e+e+iaiatgGriv+r eel+ +klG+a++v+++s+Gt++    dr+lv+e++++ kavt+lvrGgnk+i++eakrslhda+cvvrnl+kd+r+vyGGG+ae++csla++++ad ++gv+qyairafa+al++iplalaen+Gl pi  ++++k++q+ke np++G+  l         e+Gt     dmkel v+etligk+qq++la+q+vkmilkiddvis+
  MMETSP1061-20121228|17109_1   3 MVYDEYGRPFVILKEQQAKNRVKGVEATKSNILAARSISSILRTSLGPKGMDKLLVSPDGDVTITNDGATILSQMEIHQQVARLMVELSSSQDDEIGDGTTGVVVLAGSLLEQAEILLNKGIHPVRIARGFEAASQVAIEQLAKISEKVEFSKENLEPLLTTAKTTLNSKILQPYKEEMAQIAVQAILDVADLERHDVNFDMIRMEGKTGGSLADTKLVNGLVLDKEFSHPQMPTIVENAKLCILTCPLEPPKPKTKHKLQIDSAEAYEELYNQEQEYFRDMIQKIKDSGANLVICQWGFDDEANHLLLQQELPAVRWVGGVEIEHIAIATGGRIVARVEELTPDKLGTAGKVKQISMGTNNsrqqDRILVLEDCANQKAVTVLVRGGNKMIVDEAKRSLHDAMCVVRNLVKDNRVVYGGGSAEVSCSLAIKKHADTVTGVDQYAIRAFADALDDIPLALAENAGLAPIAEVTAIKSRQVKEGNPTIGLGLLpldqgetnvENGTgdhaMDMKELGVFETLIGKQQQMQLAAQVVKMILKIDDVISH 549
                  689*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************75444489**********************************************************************************************************************9985422211111112232223369*********************************985 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  505.3   9.2  1.1e-154  4.4e-152       1     519 [.      11     548 ..      11     550 .. 0.94

  Alignments for each domain:
  == domain 1    score: 505.3 bits;  conditional E-value: 1.1e-154
    TIGR02339   1 pvlilkeg..tqrtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidve..dkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvg......edklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagv..........dvftg...eiedmlelgvieplkvkeqaiksateaatlilriDdvia 519
                  p +ilke+  ++r+kg +a+ksni aa+ ++ +++++lGP+G+Dk+Lv + GdvtitnDGatil +m+i++  a+l+ve + +qd+e+gDGtt +vvlaG+Lle+ae Ll+++ihP  i++G++ a++ a e + +i+ek++ +  + e l  +a+t+l+sk   + +k+ +a+++v+a+  v++ +   +++v++d i++e k+Ggs++dt+lv+G+v+Dke  h++mP+ venak+ +l  ple  k++++ kl+i+s +  ++  +qe++++++m++ki+d+Gan+vicq g Dd a+h+l ++ + avr v   +ie++a atG++iv+ ++e+++++LG+a+ v++ ++g      +d+++ +e+++n kavt+l+rGg++++vde+ R+l+Da+ vv+++++d++vv GgG+ ev  ++ ++++a++++G +q a++afadal+ ip +laenaGl pi  ++ ++++  kegn ++g+          +v +g   +  dm elgv+e+l  k+q ++ a+ +  +il+iDdvi+
  MMETSP1061-20121228|17109_1  11 PFVILKEQqaKNRVKGVEATKSNILAARSISSILRTSLGPKGMDKLLVSPDGDVTITNDGATILSQMEIHQQVARLMVELSSSQDDEIGDGTTGVVVLAGSLLEQAEILLNKGIHPVRIARGFEAASQVAIEQLAKISEKVEFSkeNLEPLLTTAKTTLNSKIL-QPYKEEMAQIAVQAILDVADLE---RHDVNFDMIRMEGKTGGSLADTKLVNGLVLDKEFSHPQMPTIVENAKLCILTCPLEPPKPKTKHKLQIDSAEAYEELYNQEQEYFRDMIQKIKDSGANLVICQWGFDDEANHLLLQQELPAVRWVGGVEIEHIAIATGGRIVARVEELTPDKLGTAGKVKQISMGtnnsrqQDRILVLEDCANQKAVTVLVRGGNKMIVDEAKRSLHDAMCVVRNLVKDNRVVYGGGSAEVSCSLAIKKHADTVTGVDQYAIRAFADALDDIPLALAENAGLAPIAEVTAIKSRQVKEGNPTIGLgllpldqgetNVENGtgdHAMDMKELGVFETLIGKQQQMQLAAQVVKMILKIDDVIS 548
                  56789886336899*******************************************************************************************************************************87611556799************.8******************998...778************************************************************************************************************************************************************9977662222225678999****************************************************************************************************************999864444444444566552235789*********************************96 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  431.4   7.3  2.2e-132    9e-130       3     514 ..      22     547 ..      18     549 .. 0.92

  Alignments for each domain:
  == domain 1    score: 431.4 bits;  conditional E-value: 2.2e-132
    TIGR02342   3 ekekpedvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdls..drealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevks..ddsk.ivkitGvkn..agktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrh.aqGektaGi..........svrkgg...itdileeevlqpllvtksavtlasetvrsilkiddiv 514
                  ++ k  +  +sni+aa++++ ++rtslGpkGmdkl+ +  G+v+itndGatil+q+e++  +a+l+vels +qd e GdGtt vvvlaG+ll+ ae ll+kgihp+ i+ +f+ a + a++ l ++s++v+ s  + e l+++a+t+l+sk++  y + +a +av+a+l v d  + ++v++ +i++  k Gg + dt+l++G+vl++++s+    pt +e+ak++++   l +pk++++ ++ ++  ++ + + ++e++y  ++++kik +gan+++ q        +d a h+l ++++  v+ +   e+e i+ + G + va +++lt+dklG+a  v+++++  ++s+   +i  +++  ++k+v+vlvrG nk+++dea+rslhda+cv+r lvk+  ++ GGG+ e+  +l+++k+a++++Gv++y +rafadal+ ip +laenaGl+pi+ vt +++r  ++G+ t G+          +v++g+     d++e  v   l+ ++  ++la+++v++ilkidd++
  MMETSP1061-20121228|17109_1  22 NRVKGVEATKSNILAARSISSILRTSLGPKGMDKLLVSPDGDVTITNDGATILSQMEIHQQVARLMVELSSSQDDEIGDGTTGVVVLAGSLLEQAEILLNKGIHPVRIARGFEAASQVAIEQLAKISEKVEFSkeNLEPLLTTAKTTLNSKILQPYKEEMAQIAVQAILDVADL-ERHDVNFDMIRMEGKTGGSLADTKLVNGLVLDKEFSH-PQMPTIVENAKLCILTCPLEPPKPKTKHKLQIDSAEAYEELYNQEQEYFRDMIQKIKDSGANLVICQWG-----FDDEANHLLLQQELPAVRWVGGVEIEHIAIATGGRIVARVEELTPDKLGTAGKVKQISMgtNNSRqQDRILVLEDcaNQKAVTVLVRGGNKMIVDEAKRSLHDAMCVVRNLVKDNRVVYGGGSAEVSCSLAIKKHADTVTGVDQYAIRAFADALDDIPLALAENAGLAPIAEVTAIKSRQvKEGNPTIGLgllpldqgetNVENGTgdhAMDMKELGVFETLIGKQQQMQLAAQVVKMILKIDDVI 547
                  4455566789************************************************************************************************************************998446688**********************************6.7789*******************************97.789*************************************************************99975.....689999**************************************************986544444133555555433679*************************************************************************************************9873679999886334333333366666522246799999***************************98 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  363.8   5.6  6.7e-112  2.8e-109       6     521 ..      18     548 ..      11     552 .. 0.93

  Alignments for each domain:
  == domain 1    score: 363.8 bits;  conditional E-value: 6.7e-112
    TIGR02344   6 nqntkresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvdvede..akllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiG.....deyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqe............ekkalGidGetG.kivdmkekgiweplavklqtiktaiesavlllriddivs 521
                  +q ++r +G +a  sni aa++++ i+rt+lGpk m k+l+ p G + +tndG +il +++++   a+ ++els +qd+e+GdGtt v++laG ll++ae +l+k ihp+ i r+++ a + a+++l ++s +v+ ++e  + ll+  k+++ +k+ + +++ ++++a++a+  v+  er+    + d    +++e   GG++ d+++++G++l+k+  hp+m   +en ++ +l cple  k +++ +++i + e +++l ++e+e+ + + ++i ++ ++lvi + G  d a+h ll++++ a+r v   + + ia ++G +iv+rveel+ + +Gt   + ++ +       ++    l++c + ka t+l+rG+ k +++e +r l+da+ v+rn++ + ++v+GGG++e++ s ++kk+a +++gv+q+ ++a adal+ ip  l++n+G  +i  +t+++++  +e            ++ ++ ++  tG + +dmke g++e+l  k+q ++ a +   ++l+idd++s
  MMETSP1061-20121228|17109_1  18 QQAKNRVKGVEATKSNILAARSISSILRTSLGPKGMDKLLVSPDGDVTITNDGATILSQMEIHQQVARLMVELSSSQDDEIGDGTTGVVVLAGSLLEQAEILLNKGIHPVRIARGFEAASQVAIEQLAKISEKVEFSKEnlEPLLTTAKTTLNSKILQPYKEEMAQIAVQAILDVADLERHDV--NFD---MIRMEGKTGGSLADTKLVNGLVLDKEFSHPQMPTIVENAKLCILTCPLEPPKPKTKHKLQIDSAEAYEELYNQEQEYFRDMIQKIKDSGANLVICQWGFDDEANHLLLQQELPAVRWVGGVEIEHIAIATGGRIVARVEELTPDKLGTAGKVKQISMGTnnsrqQDRILVLEDCANQKAVTVLVRGGNKMIVDEAKRSLHDAMCVVRNLVKDNRVVYGGGSAEVSCSLAIKKHADTVTGVDQYAIRAFADALDDIPLALAENAGLAPIAEVTAIKSRQVKEgnptiglgllplDQGETNVENGTGdHAMDMKELGVFETLIGKQQQMQLAAQVVKMILKIDDVIS 548
                  4567899*******************************************************************************************************************************9976522578999999**********************99987774433..455...4899************************************************************************************************************************************************88777776543212224567899**********************************************************************************************************99998899999999997777777666662689**********************************99 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  350.1   4.9  8.3e-108  3.4e-105       5     519 ..      13     548 ..      10     551 .. 0.91

  Alignments for each domain:
  == domain 1    score: 350.1 bits;  conditional E-value: 8.3e-108
    TIGR02345   5 vllke..gtdtsqGkgqlisninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavl...sldkddldkkliGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGse......rynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGv..........dietee...ildaleafvwePllvkknalkaateaaatilsvdetik 519
                  v+lke  + +  +G     sni a+++i+ il+t lGP+Gmdkl+vs +   +++ndGatil +++i   +a+l+v+++ sqd+e+GdGtt vvvlag+ll++a  l+++g+hp  i r+++ a ++aie+l +i+ +++  ++e+ e l + a+t+l+sk+++ +ke ++++ v+a+l    l+++d++ ++i +   +GG+l d+ lv+G+ ++k fs   + q P  ++n k+++l   le    k+   ++++++e y+e+ + e +  ++ ++ki++sGan+v+ +    d a   + ++++ +   v   +++ ++ atG++i++ v++l+ d+lG+ +   +  +G++      r  +++++ + ka+t+++rGg + +++ea+rslhda+++vr  +k++++v GGG+ e+  s  +++++ ++ g  q  i+a+a+al+ iP  laenaG+  i  +  ++++  k+g+ + G+          ++e+ +    +d+ e  v+e l+ k+  ++ a++  ++il++d+ i 
  MMETSP1061-20121228|17109_1  13 VILKEqqAKNRVKGVEATKSNILAARSISSILRTSLGPKGMDKLLVSPDGdVTITNDGATILSQMEIHQQVARLMVELSSSQDDEIGDGTTGVVVLAGSLLEQAEILLNKGIHPVRIARGFEAASQVAIEQLAKISEKVE-FSKENLEPLLTTAKTTLNSKILQPYKEEMAQIAVQAILdvaDLERHDVNFDMIRMEGKTGGSLADTKLVNGLVLDKEFS---HPQMPTIVENAKLCILTCPLEPPKPKTKHKLQIDSAEAYEELYNQEQEYFRDMIQKIKDSGANLVICQWGFDDEANHLLLQQELPAVRWVGGVEIEHIAIATGGRIVARVEELTPDKLGTAGKVKQISMGTNnsrqqdRILVLEDCANQKAVTVLVRGGNKMIVDEAKRSLHDAMCVVRNLVKDNRVVYGGGSAEVSCSLAIKKHADTVTGVDQYAIRAFADALDDIPLALAENAGLAPIAEVTAIKSRQVKEGNPTIGLgllpldqgetNVENGTgdhAMDMKELGVFETLIGKQQQMQLAAQVVKMILKIDDVIS 548
                  444441145667899999****************************998879***************************************************************************************9.5566689999**************************761115667788888***************************9...68***********************************************************************************9999****************************************9643333338889**************************************************************************************************************88877765222222221123332222478999******************************986 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  343.2   6.8  1.5e-105    6e-103       6     528 ..      22     548 ..      18     551 .. 0.90

  Alignments for each domain:
  == domain 1    score: 343.2 bits;  conditional E-value: 1.5e-105
    TIGR02340   6 erksGedvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavky...ikeklavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlke...ekkklkflGldlsngk...irdnveaGvlePavskvkslkfateaaitilriddlik 528
                  +r +G ++ k n+la+ +++ i++tslGP G+dk+lv   GdvtitndGatil+++e+++  a+++vel++ qd e+GdGtt vv+la +ll++a+ l+++ +hP  +  G+  a + a++    i+ek+++s e+l  e l+  akt+l ski+++  + +++++v+a+l v   +++ +++   + + +  + G+s  ++ lv+G +l+ + +  qmp+ v++ak+ +l   l+  k k   ++ ++ +e  e++ ++e++  ++ i+ki ++Gan+v+   G dd a   l+++++ avr v   ++ +ia atG+++v+ + +l  ++   a ++ +    +++   +d ++++++  ++k++++++rG n++++de +rslhda+cvv+  +  ++vv GgG+ e++ s+ +++ a t+   +q ai +fa+al  iP  la na+      v+ +++ + ++   +       l +   +++ng+    +d +e+Gv+e  + k ++++ a +    il+idd+i 
  MMETSP1061-20121228|17109_1  22 NRVKGVEATKSNILAARSISSILRTSLGPKGMDKLLVSPDGDVTITNDGATILSQMEIHQQVARLMVELSSSQDDEIGDGTTGVVVLAGSLLEQAEILLNKGIHPVRIARGFEAASQVAIEQlakISEKVEFSKENL--EPLLTTAKTTLNSKILQPYKEEMAQIAVQAILDVADLERH-DVN--FDMIRMEGKTGGSLADTKLVNGLVLDKEFSHPQMPTIVENAKLCILTCPLEPPKPKTKHKLQIDSAEAYEELYNQEQEYFRDMIQKIKDSGANLVICQWGFDDEANHLLLQQELPAVRWVGGVEIEHIAIATGGRIVARVEELTPDKLGTAGKVKQISMGTNNSRQQDRILVLEDCANQKAVTVLVRGGNKMIVDEAKRSLHDAMCVVRNLVKDNRVVYGGGSAEVSCSLAIKKHADTVTGVDQYAIRAFADALDDIPLALAENAGLAPIAEVTAIKSRQVKEGNPTiglGLLPLDQGETNVENGTgdhAMDMKELGVFETLIGKQQQMQLAAQVVKMILKIDDVIS 548
                  6789999*************************************************************************************************************999875222667777777776..79*******************************9988744.444..467888999********************************************************************************************************************************9997776665555545444444445555677899999*********************************************************************************************98877777777776665555444223333333345555322268999*******************************96 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  316.4   6.8   1.7e-97   7.1e-95       2     513 ..      14     548 ..      13     551 .. 0.91

  Alignments for each domain:
  == domain 1    score: 316.4 bits;  conditional E-value: 1.7e-97
    TIGR02341   2 ilkdsaeeer..aenarlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksa..vdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrl....kgstnleaiqiikklggklddsyldegfllekkigvnq.pkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeilig......edkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraa.haegnstagldl...eege..........iadlrklgivesyklkravvssaaeaaevllrvdniik 513
                  ilk++  ++r  + +a  s ++ a ++  +++++lgpkgmdk+l+s   ++++++tndgatil ++ + +  a+++v++s  qdde+gdgtt v+vla  ll +ae+l+nk ihp  i  g+  a+++a+e l k +  v+ s++     e ll  a+ttl+skil   k+ +a++av+a+l +    +   n++ i++  k gg+l+d+ l +g++l+k++   q p  +enak+ i   +l+  k k    ++++ds+    el + e+e +++ ++ki+  + n  i +    +  + l+ + ++ a+       +e +a+ tgg iv+  +e    klg   ++++i +g      +d++l +  ++  +a t+++rg  + i+dea+rslhda++v+ + vk+ r+v+ggg+ae+  + a++++a+ v+g +  a+ afa al  +p  la+nag+     v+ +++   +egn t+gl l   ++ge            d+++lg+ e++  k++ +  aa+  +++l++d++i 
  MMETSP1061-20121228|17109_1  14 ILKEQQAKNRvkGVEATKSNILAARSISSILRTSLGPKGMDKLLVSP--DGDVTITNDGATILSQMEIHQQVARLMVELSSSQDDEIGDGTTGVVVLAGSLLEQAEILLNKGIHPVRIARGFEAASQVAIEQLAKISekVEFSKE---NLEPLLTTAKTTLNSKILQPYKEEMAQIAVQAILDVadleRHDVNFDMIRMEGKTGGSLADTKLVNGLVLDKEFSHPQmPTIVENAKLCILTCPLEPPKPKT-KHKLQIDSAEAYEELYNQEQEYFRDMIQKIKDSGANLVICQWGFDDEANHLLLQQELPAVRWVGGVEIEHIAIATGGRIVARVEELTPDKLGTAGKVKQISMGtnnsrqQDRILVLEDCANQKAVTVLVRGGNKMIVDEAKRSLHDAMCVVRNLVKDNRVVYGGGSAEVSCSLAIKKHADTVTGVDQYAIRAFADALDDIPLALAENAGLAPIAEVTAIKSRqVKEGNPTIGLGLlplDQGEtnvengtgdhAMDMKELGVFETLIGKQQQMQLAAQVVKMILKIDDVIS 548
                  67777777662256789999************************986..569*********************************************************************************997722444444...45899*****************************8733334678******************************985449*******************997.689*************************************99999*********************************************************9554444589***************************************************************************************************998899999861679*****985323255541111111332469********************************995 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  306.3   6.2   1.9e-94     8e-92      12     527 ..      24     551 ..      13     553 .] 0.90

  Alignments for each domain:
  == domain 1    score: 306.3 bits;  conditional E-value: 1.9e-94
    TIGR02347  12 lrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklkikkee.evdrelllevartslrtkleaeladklteivvdavlaikkdeee.idlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvig......eekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadear.evvgvdl...etge..........sivaelkgiwdnysvkkqllssatviasqlllvdevlraGk 527
                  ++  +a k n+ aa++++++l+t lGPkG  k+lvs  Gd+ +t dG ++l +++i +  a l+   +++qdd +GdGtt +v+l+g+ll+qae l++ g+hP  ++ G+e+a + a+e l k+  k+e  + + e ll+ a+t+l  k+ + + +++++i v+a+l + + e++ +++ m+ +      +  dtkl++Glvld  + hP+m++ v+n+ + +l   le  k     ++  +sae  e+l ++e+++  d ++ki +       + a+   +vi q G d  +  ll ++++ a+r +   ++e + +a+GG+ +  ve+ltp++lG aG v ++++g      +++   +e++ n k+vt+l++g n+  ++  k +++d +  v+n ++d+ vv G g+ e+ ++ ++k+++ +v G ++ ++ afa+al  iP  l+en+G+  +  ++++++++ +++  ++g+ l   ++ge          +++ ++ g+++++  k+q+++ a+ + + +l +d+v+  G+
  MMETSP1061-20121228|17109_1  24 VKGVEATKSNILAARSISSILRTSLGPKGMDKLLVSPDGDVTITNDGATILSQMEIHQQVARLMVELSSSQDDEIGDGTTGVVVLAGSLLEQAEILLNKGIHPVRIARGFEAASQVAIEQLAKISEKVEFsKENLEPLLTTAKTTLNSKILQPYKEEMAQIAVQAILDVADLERHdVNFDMIRMEGKTGGSLADTKLVNGLVLDKEFSHPQMPTIVENAKLCILTCPLEPPKPKTKHKLQIDSAEAYEELYNQEQEYFRDMIQKIKD-------SGAN---LVICQWGFDDEANHLLLQQELPAVRWVGGVEIEHIAIATGGRIVARVEELTPDKLGTAGKVKQISMGtnnsrqQDRILVLEDCANQKAVTVLVRGGNKMIVDEAKRSLHDAMCVVRNLVKDNRVVYGGGSAEVSCSLAIKKHADTVTGVDQYAIRAFADALDDIPLALAENAGLAPIAEVTAIKSRQVKEGnPTIGLGLlplDQGEtnvengtgdhAMDMKELGVFETLIGKQQQMQLAAQVVKMILKIDDVISHGN 551
                  455678899******************************************************************************************************************97766641445678999***************************999866544******9999999999***********************************************************************9954.......2323...7899*************************************************************983333334678899**************************************************************************************************999999876655545555543222444311111112224678899*****************************98885 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.1   5.4   6.8e-93   2.8e-90      11     517 ..      22     547 ..      13     550 .. 0.91

  Alignments for each domain:
  == domain 1    score: 301.1 bits;  conditional E-value: 6.8e-93
    TIGR02346  11 rhlsgleeavlknieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkreaeg.sv.krvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeig......skkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaah.kkgnkslgi..........diekesd.avkdvkeekiyDllaakkfaiklateaavtvLkvDqii 517
                  + ++g+ ea   ni a + +s i+rtslGP+gm+kl++     + +tnD atil ++e++  +a+l+v++s  q+ e+GDgt  v+vlag lLe+ae l++ G++p+ i +G+e a + a+e L +++      +e+ e l+++ k++l sk l+  ++ +a++  +ai+ v   + ++ n d ir+    Ggsl d ++++Glvl++e    ++ + v++ak+ +++cpl+  +  tk    + +ae   +    e +   ++i++i+dsg+++++ +    d a h + + ++  ++     e+  ++ + g   ++r++  +p++lG+  +vk   +g      ++++ v+++  + +k  t+++rG  k ++d+  r+++D + vv++lvkd+r++ G+g++e+  + ++kk a++++g++qyai+ fa a + iP +laenaGl +   ++++ + + k+gn ++g+          ++e+++     d+ke  ++++l +k+  ++la++ +  +Lk+D +i
  MMETSP1061-20121228|17109_1  22 NRVKGV-EATKSNILAARSISSILRTSLGPKGMDKLLVSPDGDVTITNDGATILSQMEIHQQVARLMVELSSSQDDEIGDGTTGVVVLAGSLLEQAEILLNKGIHPVRIARGFEAASQVAIEQLAKISEKVEFSKENLEPLLTTAKTTLNSKILQPyKEEMAQIAVQAILDVADLERHDVNFDMIRMEGKTGGSLADTKLVNGLVLDKEFSHpQMpTIVENAKLCILTCPLEPPKPKTKHKLQIDSAEAYEELYNQEQEYFRDMIQKIKDSGANLVICQWGFDDEANHLLLQQELPAVRWVGGVEIEHIAIATGGRIVARVEELTPDKLGTAGKVKQISMGtnnsrqQDRILVLEDCAN-QKAVTVLVRGGNKMIVDEAKRSLHDAMCVVRNLVKDNRVVYGGGSAEVSCSLAIKKHADTVTGVDQYAIRAFADALDDIPLALAENAGLAPIAEVTAIKSRQvKEGNPTIGLgllpldqgetNVENGTGdHAMDMKELGVFETLIGKQQQMQLAAQVVKMILKIDDVI 547
                  455665.46678********************************************************************************************************************99888999*****************9986789************************************************97641332689***************************************************************************************************************99999999888333322356777776665.7888**************************************************************************************98888888777668888888863333333322455554445789********************************98 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   1.7   1.6e-19   6.4e-17      20     187 ..      39     204 ..      21     213 .. 0.86
   2 ?    1.5   0.0     0.042        17     287     322 ..     326     356 ..     284     383 .. 0.88
   3 !   10.2   0.8   9.6e-05     0.039     386     471 ..     394     481 ..     366     551 .. 0.74

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 1.6e-19
    TIGR02348  20 kladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkee.iaq.vatisanndeeiGeliaeamekvgkdGvitveesksletelev 187
                  +++  +++ lGPkg + +l    G  +it+dG t+  ++e+++++    a+l+ e +s  +d  GdGtt  +vla +++++    +  G  p+++ rG e a + ++e+l+k s++v+ ++e ++  ++t  ++ +++i +   e m++++ + +++v + +  + + ++
  MMETSP1061-20121228|17109_1  39 SISSILRTSLGPKGMDKLLVSPDGDVTITNDGATILSQMEIHQQV----ARLMVELSSSQDDEIGDGTTGVVVLAGSLLEQAEILLNKGIHPVRIARGFEAASQVAIEQLAKISEKVEFSKEnLEPlLTTAKTTLNSKILQPYKEEMAQIAVQAILDVADLERHDVNFDM 204
                  57778899********************************99987....7899999*************************************************************97654155423445556678888888999999999999998887777776665 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.042
    TIGR02348 287 lediailtggqviseelglkleevtleklGkakkvt 322
                  +e iai tgg++++     ++ee+t +klG+a kv+
  MMETSP1061-20121228|17109_1 326 IEHIAIATGGRIVA-----RVEELTPDKLGTAGKVK 356
                  789********997.....68899999999998886 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 9.6e-05
    TIGR02348 386 elkekkarvedalnatraavee.GivaGGGvallraaeklee.lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkekk 471
                   + e k  + da+   r  v++  +v GGG a ++++ ++++ +++ +  ++  ++    al++    +aenaG  +   v ++k+++
  MMETSP1061-20121228|17109_1 394 IVDEAKRSLHDAMCVVRNLVKDnRVVYGGGSAEVSCSLAIKKhADTVTGVDQYAIRAFADALDDIPLALAENAGLAPIAEVTAIKSRQ 481
                  56789999***********97626999*************99566666678889999999999988899*****98866666666543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.46
# Mc/sec: 1586.74
//
Query:       MMETSP1061-20121228|17111_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2422.94
//
Query:       MMETSP1061-20121228|17113_1  [L=1093]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-06   23.4   0.0    1.5e-05   22.4   0.0    1.5  1  TIGR00500 met_pdase_I: methionine aminopeptidase, type I
    9.9e-06   22.7   0.0    2.7e-05   21.3   0.0    1.6  1  TIGR02993 ectoine_eutD: ectoine utilization protein EutD


Domain annotation for each model (and alignments):
>> TIGR00500  met_pdase_I: methionine aminopeptidase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   7.5e-09   1.5e-05      88     246 ..     289     449 ..     284     450 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 7.5e-09
    TIGR00500  88 DivniDvgveldGyygDtaktllvg...kvseeaeklleatkealkkaieeikvgkrikeiskaiektaeekgfsvvkeyt....GHGiGrklHeepeilnyakketnvrlkeGmviai....EPmvnekteeiviaadgWtvltkdkklsaqfEhtvvvtengveiLte 246
                  Di+ + +g++++ y +  a+t+lv    kvs++ e lle+ +++    ++ +k+g+ +k + ka  ++++++g   + e      G   G  +  +       ++++ v++++Gmv+++      +v ++++   + +d    + k ++++  +  +v +t++g e+Lt+
  MMETSP1061-20121228|17113_1 289 DIIVVSLGARYKLYCSNIARTFLVDppkKVSKNYEILLEVQEAC----LDAMKPGNPLKAVYKAAVSYLKKNGHEKLIEKLpknlGFAQGLDFRDSTL---LLSPKNSVVFRKGMVFCLavgfQNLVLTESHLNNTPKDS--PVKKLRNYALMVSDMVNITDKGGEVLTK 449
                  9***********************72223555555566655555....6789*********************9876655501115555555555444...4578889**********9333345666666666666664..45566778889999***********997 PP

>> TIGR02993  ectoine_eutD: ectoine utilization protein EutD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.3e-08   2.7e-05     251     357 ..     298     404 ..     290     417 .. 0.89

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.3e-08
    TIGR02993 251 vykryhvplsrtvflgkptqafldaekavlegleaglevakpgntcediakaffavlkkygiekd.srtgypiglsyppdwgertmslrpgdktvlkpgmtfhfmtgl 357
                   yk y   ++rt fl  p+++        le  ea l++ kpgn  + + ka  + lkk g ek  ++    +g +   d+ + t+ l p +  v+++gm f +  g+
  MMETSP1061-20121228|17113_1 298 RYKLYCSNIART-FLVDPPKKVSKNYEILLEVQEACLDAMKPGNPLKAVYKAAVSYLKKNGHEKLiEKLPKNLGFAQGLDFRDSTLLLSPKNSVVFRKGMVFCLAVGF 404
                  577787888887.88899999999999**********************************999637889999*****************************988774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1093 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.51u 0.14s 00:00:00.65 Elapsed: 00:00:00.42
# Mc/sec: 3434.86
//
Query:       MMETSP1061-20121228|17112_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 2318.06
//
Query:       MMETSP1061-20121228|17131_1  [L=581]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (581 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2556.19
//
Query:       MMETSP1061-20121228|17144_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1462.03
//
Query:       MMETSP1061-20121228|17142_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.27
# Mc/sec: 2923.31
//
Query:       MMETSP1061-20121228|17141_1  [L=695]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-05   20.1   0.0    0.00012   18.7   0.0    1.6  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    0.00018   18.3   0.1     0.0015   15.2   0.0    2.0  2  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    0.00041   17.1   0.1     0.0012   15.6   0.0    1.7  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    0.00063   16.5   0.2     0.0077   12.9   0.0    2.3  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0037   14.3   0.0       0.45    7.4   0.0    2.2  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
  ------ inclusion threshold ------
      0.022   11.5   0.1       0.16    8.7   0.0    2.1  2  TIGR04046 MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family


Domain annotation for each model (and alignments):
>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.43   2.9e+02     143     154 ..      41      52 ..      36      60 .. 0.79
   2 !   18.7   0.0   1.7e-07   0.00012     277     323 ..     300     346 ..     278     362 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.43
    TIGR01318 143 rvaviGaGpaGl 154
                   +a+iG+Gpa +
  MMETSP1061-20121228|17141_1  41 TIAIIGGGPAAM 52 
                  689******986 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.7e-07
    TIGR01318 277 lidveGkrvvvlGGGdtamdcvrtairlgakkvtcvyrrdeanmpGs 323
                    dve k v+++GGG +a d    ai++g ++v c +r d+a+m   
  MMETSP1061-20121228|17141_1 300 KQDVENKTVLIVGGGLSAEDLALMAIKEGVSHVHCTFRPDDAEMADV 346
                  3689***************************************9765 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.065        44       2      23 ..      42      65 ..      41      76 .. 0.82
   2 !   15.2   0.0   2.2e-06    0.0015     152     257 ..     305     417 ..     297     427 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.065
    TIGR04018  2 viiiGaGPiGl..aaaieakkagl 23
                 + iiG+GP  +  + a+e++k++l
  MMETSP1061-20121228|17141_1 42 IAIIGGGPAAMffCHALEIQKKEL 65
                 68******9874478999999987 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 2.2e-06
    TIGR04018 152 kqkvvvvGgknsavdaalelyrkgae.vtlvvrgeels.ekvkyWvkpdlenrikegkikalfes....evk.eieeesvtletpegeveeiendfvlaltGyrpdlellekl 257
                  ++ v++vGg  sa d al   ++g + v   +r ++ + + v  W   ++++  ++   k++ ++     vk +++e++ +  + ++e++  + d v+  tGy+p++++l++ 
  MMETSP1061-20121228|17141_1 305 NKTVLIVGGGLSAEDLALMAIKEGVShVHCTFRPDDAEmADVTRWPYDKVNSYAETTVKKVEGNTvtlgYVKlNVRENEYEDWECDEEITLKNIDTVIFCTGYEPNFNMLDES 417
                  5789***************999996438888997776526899**8887776654444344333310003332455555554455666755566****************875 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.46   3.1e+02       3      12 ..      42      51 ..      40      69 .. 0.82
   2 !   15.6   0.0   1.7e-06    0.0012     140     247 ..     304     418 ..     301     424 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.46
    TIGR01292  3 viiiGaGpaG 12
                 ++iiG+Gpa 
  MMETSP1061-20121228|17141_1 42 IAIIGGGPAA 51
                 6789999985 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.7e-06
    TIGR01292 140 knkevavvGggdsAveealyLskiakkVtlvhrrdklraekillerlkkne..kievllnstveeikGde.kvesvkikntk........tkeeeelkvdgvFiaiGhepntellkell 247
                   nk+v++vGgg sA + a  L  i + V  vh   ++r +++ +  ++  +  k++   ++tv++++G++ ++  vk++ ++        ++e +  ++d+v +  G+epn ++l e+l
  MMETSP1061-20121228|17141_1 304 ENKTVLIVGGGLSAEDLA--LMAIKEGVSHVHC--TFRPDDAEMADVTRWPydKVNSYAETTVKKVEGNTvTLGYVKLNVREneyedwecDEEITLKNIDTVIFCTGYEPNFNMLDESL 418
                  59***********96655..5556666665554..4555555555554443339****************8888888764441111111133455567999999*******99998874 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0     0.058        40     127     152 ..      33      58 ..      22      92 .. 0.60
   2 !   12.9   0.0   1.1e-05    0.0077     272     387 ..     305     409 ..     293     423 .. 0.61

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.058
    TIGR01316 127 ekapstkkkvaviGaGpaGlavasel 152
                  + ++  +  +a+iG Gpa +   + l
  MMETSP1061-20121228|17141_1  33 QDNDDPRSTIAIIGGGPAAMFFCHAL 58 
                  4556677899********98655432 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.1e-05
    TIGR01316 272 gkkvvviGgGntavdaartalrlGae.vhvvyrrtredmtaree.eikhaeeeGvkfefllqpveviGdeeGevkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGqea 387
                   k v+++GgG  a d a  a + G+  vh+ +r   ++m+  +   +++++       +   +   + + eG+ +++ + k++++e++         + +e +  + d+vi+  G e+
  MMETSP1061-20121228|17141_1 305 NKTVLIVGGGLSAEDLALMAIKEGVShVHCTFRPDDAEMADVTRwPYDKVNS------YAETT---VKKVEGNTVTLGYVKLNVRENEYE----DWECDEEITLKNIDTVIFCTGYEP 409
                  58999********************99******9999886543212222222......22222...223344445555554444443322....223333333334455555555555 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0054       3.7     138     163 ..      32      57 ..      18      72 .. 0.69
   2 !    7.4   0.0   0.00066      0.45     138     244 ..     298     410 ..     289     421 .. 0.64

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0054
    TIGR03169 138 kakaseetkslavvGgGaagvElala 163
                  +++++    ++a++GgG a++    a
  MMETSP1061-20121228|17141_1  32 SQDNDDPRSTIAIIGGGPAAMFFCHA 57 
                  3334444559*********9855554 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00066
    TIGR03169 138 kakaseetkslavvGgGaagvElala.lrkrlkkrglk...aevslaseakllqalsakvrklvkrllakrgiev.lekeevtevedealllaegetl.eadavllatgakap 244
                  + k++ e k++++vGgG+ +  lal  +++ + +       ++ ++a+ ++   ++ ++  ++  + ++ + +++   k +v e e e  +++e+ tl ++d+v+ +tg ++ 
  MMETSP1061-20121228|17141_1 298 NFKQDVENKTVLIVGGGLSAEDLALMaIKEGVSHVHCTfrpDDAEMADVTRWPYDKVNSYAETTVKKVEGNTVTLgYVKLNVRENEYEDWECDEEITLkNIDTVIFCTGYEPN 410
                  456778889**************986455544444433112455566555555555555555555555666666623456677777778888877776258999999998875 PP

>> TIGR04046  MSMEG_0569_nitr: flavin-dependent oxidoreductase, MSMEG_0569 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.052        35     121     183 ..     260     323 ..     208     371 .. 0.59
   2 ?    8.7   0.0   0.00023      0.16     266     350 ..     330     417 ..     316     427 .. 0.63

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.052
    TIGR04046 121 qvvvatggyhtpaipklaerlpad....vkqlhseeyrna.eqlpdGavlvvGsGqsGaqiaedlhla 183
                  + + a g    p +pk   +l ++       +hs++  n  +++ + +vl+vG G s    aedl l 
  MMETSP1061-20121228|17141_1 260 KCIWAGGVNGIPYVPKKLVQLFRKggfkGPIVHSSNTTNFkQDVENKTVLIVGGGLS----AEDLALM 323
                  445555555566666555554433111123578887777515678889999999988....5666554 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00023
    TIGR04046 266 keeklrfapdlkenldkadavyerikasidkyiakngiea.pkesvyePvwePeeekteld..lkaaeitsviwaiGfkadyswvelp 350
                  ++ + +f+pd +e  d +   y ++++  ++ ++k + ++ + + v   v e e e+ e d  ++ ++i +vi+++G+++++++++ +
  MMETSP1061-20121228|17141_1 330 SHVHCTFRPDDAEMADVTRWPYDKVNSYAETTVKKVEGNTvTLGYVKLNVRENEYEDWECDeeITLKNIDTVIFCTGYEPNFNMLDES 417
                  55556666666666666666666666666666555443331344444556666666555541155689***************99865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (695 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 2698.01
//
Query:       MMETSP1061-20121228|17149_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1001.92
//
Query:       MMETSP1061-20121228|17159_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   15.2   0.0     0.0037   14.7   0.0    1.2  1  TIGR02907 spore_VI_D: stage VI sporulation protein D


Domain annotation for each model (and alignments):
>> TIGR02907  spore_VI_D: stage VI sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     9e-07    0.0037      95     139 ..     156     202 ..     114     209 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9e-07
    TIGR02907  95 isiPknRvkslddvyveiesF..DYdLkeegrlklladisisGlkqe 139
                    iP+  + +l+dv+++ +    DY+++eeg l+l+ad +++ +k +
  MMETSP1061-20121228|17159_1 156 SRIPRRQLPNLQDVTIDKNAVpkDYEVTEEGGLQLVADCELEPMKFN 202
                  569*************9776555******************999654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2058.05
//
Query:       MMETSP1061-20121228|17163_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 934.48
//
Query:       MMETSP1061-20121228|17164_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 2181.70
//
Query:       MMETSP1061-20121228|17176_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 878.55
//
Query:       MMETSP1061-20121228|17181_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.2e-165  548.2   0.0   2.7e-165  547.9   0.0    1.0  1  TIGR01979 sufS: cysteine desulfurase, SufS family
   4.2e-107  356.6   0.0   5.4e-107  356.2   0.0    1.0  1  TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
      1e-65  220.0   0.0    1.3e-65  219.7   0.0    1.1  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
    6.9e-65  217.7   0.0    2.4e-64  215.9   0.0    1.8  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
    5.6e-46  154.8   0.0    1.5e-45  153.5   0.0    1.5  1  TIGR03402 FeS_nifS: cysteine desulfurase NifS
      3e-36  123.1   0.0    8.5e-36  121.6   0.0    1.7  1  TIGR02006 IscS: cysteine desulfurase IscS
    3.4e-35  119.8   0.0    1.5e-34  117.7   0.0    1.9  2  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
      8e-31  105.0   0.0    1.6e-30  104.0   0.0    1.5  1  TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family
    2.9e-12   44.5   0.0      6e-12   43.4   0.0    1.5  1  TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
    6.3e-09   33.2   0.0    9.5e-09   32.6   0.0    1.3  1  TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
    1.2e-06   25.6   0.0    2.1e-06   24.9   0.0    1.3  1  TIGR02539 SepCysS: Sep-tRNA:Cys-tRNA synthase
    2.9e-06   24.2   0.1    4.3e-06   23.7   0.0    1.2  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    0.00022   18.1   0.1    0.00042   17.2   0.0    1.4  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    0.00024   17.9   0.0    0.00056   16.7   0.0    1.5  1  TIGR01364 serC_1: phosphoserine transaminase
    0.00075   16.2   0.1     0.0012   15.5   0.0    1.3  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase


Domain annotation for each model (and alignments):
>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  547.9   0.0    1e-167  2.7e-165      14     402 ..     131     526 ..     128     527 .. 0.97

  Alignments for each domain:
  == domain 1    score: 547.9 bits;  conditional E-value: 1e-167
    TIGR01979  14 vngkplvYLDsaatsqkPkaVidaveeyyeksnanvhRgvhtlseeateayeeaRekvakfinAksaeeivftkgateslNlvaaslges.slkegdeivvseleHHanivpwqllakrkgaklkvield..edgtldleeleelltektklvaithvsNvlGtvnpveeiiklahev...galvlvDgaqavphlkvdvkeldvDflvfsgHKllgptGiGvLygkkelLeklpPfegGGemieevsleestyaelPlkfEaGtpniagvvglgaaieyle.kiglekieakekeltayalerleeidglriygpkeeeeragiisfnvegvhahDvatlldeeGiavRsGhhCaqPlmkrldveataRaslalYnteedvdalvealkkvrklf 402
                   ++k+l+YLDs+atsqkP++Vi  +++yye++n+nvhRg+htls+ at+a+e+ R++va+f+nA+s++eivft+gate++Nlva s++++ +lkegdei+++e+eHH+nivpwq++a+++ga l+++++d  + g ldl+++e+ll+e+tk+v+++hvsNv+ ++npvee++++++e+   +a+v++D++q+vph+kvdv++l+vDfl+ sgHK++gptGiG+L+g++elL+k+pPf+gGGemi++v+le st+a++P++fEaGtp+ia+vvgl++ai+yle ++g++++ea+e+e++ay+++rl+e++ ++++gp +  +ra++++f v+gvh++D++t+ld eGia+R+GhhC+qPl++  +++++aRasl++Ynt++dvd ++e l+++ ++f
  MMETSP1061-20121228|17181_1 131 SKKKKLIYLDSGATSQKPTQVIRDTSKYYERTNSNVHRGAHTLSRLATAAFEDGRDTVASFVNAHSRNEIVFTSGATEAINLVASSYSRAiKLKEGDEILLTEMEHHSNIVPWQIIAQETGALLRFVKIDfeKTGCLDLSHMESLLNENTKIVSFQHVSNVMACINPVEEMVSMVREKaspDAVVVLDACQSVPHMKVDVQTLGVDFLAASGHKMCGPTGIGFLWGREELLNKMPPFMGGGEMIDQVTLEGSTFAPAPARFEAGTPPIAEVVGLASAIRYLEtEVGMDNVEAYEHEIAAYLYNRLSEVERVTVLGPPKGVQRAALCAFYVDGVHPSDLSTFLDMEGIAIRAGHHCCQPLHQACGISHSARASLYIYNTKNDVDFFIEHLENTIQFF 526
                  5779************************************************************************************9979**********************************998765889**************************************9996534489**************************************************************************************************747************************************************************************************************************9998 PP

>> TIGR03392  FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.2   0.0    2e-109  5.4e-107      14     396 ..     133     526 ..     127     528 .. 0.95

  Alignments for each domain:
  == domain 1    score: 356.2 bits;  conditional E-value: 2e-109
    TIGR03392  14 qdktvyldsaatalkpqavieatqdfyrlesatvhrsqykealsltaryeaareqvaellnasdaenivwtrGtteslnlvaqsyarp.rlqpedeiivseaehhanlipwlmvaeqtGa..kvvklplgadklpdiellpelltkktrllalsqmsnvtGGapdlariialahka...gavvvvdGaqGvvhlpadvqaldidfyafsghklygptGiGvlyGktelleamppwqGGGkmlsevsfdgfipqavpfrfeaGtpniaGviGlsaalewlk.dldlekaeaysvsladlaeeklaklpGfrsf....riaessllafdfadvhhsdlvallaesgialraGqhcaqpllaalGvsGtlrasfapyntkqdvdalveavkkalell 396
                  ++k +ylds at+ kp  vi  t+++y++ +++vhr  ++ ++  ta +e+ r+ va+++na + ++iv+t G+te++nlva sy r  +l+ +dei+++e ehh+n++pw ++a++tGa  + vk+ +++    d++ +  ll+++t+++++  +snv   +  +++++++++++   +avvv+d  q v h+++dvq+l +df a sghk+ gptGiG l+G+ ell++mpp+ GGG m+ +v+++g +  ++p rfeaGtp ia v+Gl +a+ +l+ ++ +++ eay +++a +  ++l+++           ++ ++l af +++vh sdl + l  +gia+raG+hc qpl +a G+s + ras+  yntk+dvd ++e ++++++++
  MMETSP1061-20121228|17181_1 133 KKKLIYLDSGATSQKPTQVIRDTSKYYERTNSNVHRGAHTLSRLATAAFEDGRDTVASFVNAHSRNEIVFTSGATEAINLVASSYSRAiKLKEGDEILLTEMEHHSNIVPWQIIAQETGAllRFVKIDFEKTGCLDLSHMESLLNENTKIVSFQHVSNVMACINPVEEMVSMVREKaspDAVVVLDACQSVPHMKVDVQTLGVDFLAASGHKMCGPTGIGFLWGREELLNKMPPFMGGGEMIDQVTLEGSTFAPAPARFEAGTPPIAEVVGLASAIRYLEtEVGMDNVEAYEHEIAAYLYNRLSEVERVTVLgppkGVQRAALCAFYVDGVHPSDLSTFLDMEGIAIRAGHHCCQPLHQACGISHSARASLYIYNTKNDVDFFIEHLENTIQFF 526
                  56899**********************************************************************************769*****************************966689999999999****************************9999999999987533379**************************************************************************************************72689*********************9998876222257889*****************************************************************99998876 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.7   0.0   4.8e-68   1.3e-65       1     374 [.     137     520 ..     137     522 .. 0.93

  Alignments for each domain:
  == domain 1    score: 219.7 bits;  conditional E-value: 4.8e-68
    TIGR01977   1 iYldnAattypKpdeviealadllkeeggsagrgserlalrasreveetReelaklfnveekakvvFtnnattalNialkG.....ilkegkhvittslEHnaVlRpleklkeelgvevtivka..eeeglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgi...lflvDaaqtaGvleidveklaidllaftGHKgLlgpqGiggllikekik..lkpllsGGtGsnSasleqpsel..PdrfeaGtlNtlgiagLkagikfie.kigianikkkelkltekllegLkeikkvkiyGakdaakrvgvvSltlegldseevaaildekfdivvRaGlHCaPlaHktigtlatGtiRlslgyfnteeeieklvealk 374
                  iYld  at+ +Kp +vi+   ++++ +++++ rg ++l   a+ + e+ R+++a+++n+++++++vFt+ at+a+N++         lkeg++++ t +EH++ + p + +++e+g  + +vk   e++g +d+ ++++ ++++tk++  +h+SNv+  i p+ee+ ++ +ek +   ++++Da q++  +++dv+ l +d+la +GHK + gp+Gig l  +e++   + p++ GG   +   le  ++   P rfeaGt  +  ++gL ++i+++e ++g+ n+++ e +   +l + L+e+++v+++G+ +  +r +++++ ++g++++++++ ld +  i++RaG HC    H+  g  +  + R sl  +nt+++++ ++e l+
  MMETSP1061-20121228|17181_1 137 IYLDSGATS-QKPTQVIRDTSKYYERTNSNVHRGAHTLSRLATAAFEDGRDTVASFVNAHSRNEIVFTSGATEAINLVASSysraiKLKEGDEILLTEMEHHSNIVPWQIIAQETGALLRFVKIdfEKTGCLDLSHMESLLNENTKIVSFQHVSNVMACINPVEEMVSMVREKASpdaVVVLDACQSVPHMKVDVQTLGVDFLAASGHK-MCGPTGIGFLWGREELLnkMPPFMGGGEMIDQVTLEGSTFApaPARFEAGTPPIAEVVGLASAIRYLEtEVGMDNVEAYEHEIAAYLYNRLSEVERVTVLGPPKGVQRAALCAFYVDGVHPSDLSTFLDMEG-IAIRAGHHCCQPLHQACGISH--SARASLYIYNTKNDVDFFIEHLE 520
                  7*****999.89*****************************************************************986532223477***************************9999998622699******************************************997533389*****************************.79************97545999******99999999988762268**********************8468************************************************************9.********99888*****876..57*****************9886 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.9   0.0   8.9e-67   2.4e-64      17     400 ..     134     518 ..     129     519 .. 0.89

  Alignments for each domain:
  == domain 1    score: 215.9 bits;  conditional E-value: 8.9e-67
    TIGR01976  17 edvvflDnpaGtqvPqsvldavsaaltrsnanrgg.ayessrkadqvvddAreavadllnaespeevvlGanatslafllsralar..tlgpgdEvivtrldheaNispWlqaaedagakvkwaevd.eadgeleeadlaallsdrTRLVAvtaasnllGsivdlaaltelvhaaG...alvvvDavhyaphaliDvqalgaDllvcsaykffgPh.lGilvvraellkslkpsk........le...fsedegperlElGtlqyellaGvvaavdylaelgaseegsrRerlvasfeaieayeerlaerllagLsdlplvtvyglqdekleervptvaftvaklapervvkrlaeqnvlvaaghfyavellrqLgleaeeGvvrvglahYntaeevdkllea 400
                  +++++lD+ a +q P++v+   s++  r+n n  + a++ sr a++  +d r++va ++na+s +e+v+   at+ + l++ + +r  +l++gdE+++t+++h++Ni pW+  a+++ga ++++++d e++g l+  ++++ll++ T++V     sn++  i+ ++ ++++v++     a+vv+Da +  ph  +Dvq lg D+l+ s++k+ gP  +G+l++r+ell++++p+         ++    + +  p+r+E+Gt+ +  + G+ +a+ yl++              ++++++eaye+++a +l + Ls++  vtv g+   k  +r    af v++++p+++   l  +++ ++agh     l +  g++     +r++l  Ynt+++vd ++e 
  MMETSP1061-20121228|17181_1 134 KKLIYLDSGATSQKPTQVIRDTSKYYERTNSNVHRgAHTLSRLATAAFEDGRDTVASFVNAHSRNEIVFTSGATEAINLVASSYSRaiKLKEGDEILLTEMEHHSNIVPWQIIAQETGALLRFVKIDfEKTGCLDLSHMESLLNENTKIVSFQHVSNVMACINPVEEMVSMVREKAspdAVVVLDACQSVPHMKVDVQTLGVDFLAASGHKMCGPTgIGFLWGREELLNKMPPFMgggemidqVTlegSTFAPAPARFEAGTPPIAEVVGLASAIRYLETE-------------VGMDNVEAYEHEIAAYLYNRLSEVERVTVLGPP--KGVQRAALCAFYVDGVHPSDLSTFLDMEGIAIRAGHHCCQPLHQACGIS---HSARASLYIYNTKNDVDFFIEH 518
                  579**************************9997651555568899999**********************************9999334689**********************************9557899***************************************986434499**********************************66**************997422222111221112335579**********************9752.............58999**************************85..8999*********************************99999999***9...579**************99876 PP

>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.5   0.0   5.3e-48   1.5e-45       1     371 [.     137     524 ..     137     527 .. 0.85

  Alignments for each domain:
  == domain 1    score: 153.5 bits;  conditional E-value: 5.3e-48
    TIGR03402   1 vYlDnnattkvdpevleamlpyltekfGnpss.lhsfgkevkkaveeaRekvakllgae.eeeiiftsggtesdntaiksalaakkek..khiittavehpavlslceyLek.eg..ykvtylpvdeeGrldleelkkaltdetilvsvmyanneiGtifpieeiaklakek...gvlfhtDavqavGkvpidlkeleidllslsghklhaPkgvgalyirkgv..klepllrGGhq......e........rgrRagtenvpgivglgkaielaaee..leeenekvkalRdrlekgllekipkarvnGdkek.RlpntvnisfefiegeailllldkegiaassGsaCtsgslepshvlramgvpaevahGslRlslsrenteedvdkvlevlpeive 371
                  +YlD  at++   +v+     y++ +  n     h++++ +++a e+ R+ va++++a+  +ei+ftsg+te+ n    s  +a k k  ++i+ t++eh++ +   + +++ +g  ++  +++ +++G+ldl ++++ l+++t +vs+ +  n +  i+p+ee+ ++++ek   +++   Da q+v ++++d+++l +d+l+ sghk+ +P g+g l+ r+ +  k+ p++ GG+       e         +  agt  ++ +vgl++ai   ++e  +++ ++  +++   l ++l e +++++v G ++  + +  +++ ++ +    + ++ld+egia  +G  C     +p h  +a+g+++     s R sl  +nt++dvd  +e+l++ ++
  MMETSP1061-20121228|17181_1 137 IYLDSGATSQKPTQVIRDTSKYYERTNSNVHRgAHTLSRLATAAFEDGRDTVASFVNAHsRNEIVFTSGATEAINLVASSYSRAIKLKegDEILLTEMEHHSNIVPWQIIAQeTGalLRFVKIDFEKTGCLDLSHMESLLNENTKIVSFQHVSNVMACINPVEEMVSMVREKaspDAVVVLDACQSVPHMKVDVQTLGVDFLAASGHKMCGPTGIGFLWGREELlnKMPPFMGGGEMidqvtlEgstfapapARFEAGTPPIAEVVGLASAIRYLETEvgMDNVEAYEHEIAAYLYNRLSE-VERVTVLGPPKGvQRAALCAFYVDGVHPSDLSTFLDMEGIAIRAGHHCC----QPLH--QACGISH-----SARASLYIYNTKNDVDFFIEHLENTIQ 524
                  8**************************9986449*************************99**************9999988877766569**********99999999887455446777888899********************************************8444578999****************************************986558999999997422222221111111123469***************99887712445555677888999988876.9*******9964133444566677888899*****************96....7888..7999998.....5699******************99876 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.6   0.0   3.1e-38   8.5e-36       3     375 ..     135     523 ..     133     530 .. 0.80

  Alignments for each domain:
  == domain 1    score: 121.6 bits;  conditional E-value: 3.1e-38
    TIGR02006   3 lpiyldyaattpvdkrvaekmleyltvkfGnpasrshkfGweaeeavenarkevaeligadsr.eivftsGatesdnlaikGvakfyk.skgkhiitsktehkavldtcrelere.Gfevty..levkedGlidleelkaairddtilvsvmavnneiGviqdiaaigelcrer...kvlfhvdaaqsvGkvpidleelkvdllslsahkiyGpkGiGalyvrrkprvrlealihGGGh......erG.........lrsGtlpthqivGlGeafriakeelakdtar..vlklrdkllngiesieevylngdleqrvksnlnvsfnyveGe.....slilalkdlavssGsactsaslepsyvlralGlndelahssirftlGrftteeeidyavklvkeav 375
                  + iyld  at+   ++v++  ++y+  +  n +  +h+    a  a e  r++va+ ++a sr eivftsGate+ nl+    ++  k + g+ i+ + +eh + +   + + +e G  + +  ++ ++ G +dl+++++ ++++t +vs  +v n +  i++++++  ++re+   + +   da+qsv  +++d++ l vd+l+ s+hk+ Gp GiG l+ r     ++ + + GG        e G         + +Gt p+  +vGl  a+r  + e+  d+ +   +++   l+n ++++e+v + g  +      l  +f yv+G      s +l +  +a+ +G  c         + +a G++    h s r +l  + t++++d+ ++ +++++
  MMETSP1061-20121228|17181_1 135 KLIYLDSGATSQKPTQVIRDTSKYYERTNSNVHRGAHTLSRLATAAFEDGRDTVASFVNAHSRnEIVFTSGATEAINLVASSYSRAIKlKEGDEILLTEMEHHSNIVPWQIIAQEtGALLRFvkIDFEKTGCLDLSHMESLLNENTKIVSFQHVSNVMACINPVEEMVSMVREKaspDAVVVLDACQSVPHMKVDVQTLGVDFLAASGHKMCGPTGIGFLWGREELLNKMPPFMGGGEMidqvtlE-GstfapaparFEAGTPPIAEVVGLASAIRYLETEVGMDNVEayEHEIAAYLYNRLSEVERVTVLGPPKGVQRAALC-AF-YVDGVhpsdlSTFLDMEGIAIRAGHHCCQP------LHQACGIS----H-SARASLYIYNTKNDVDFFIEHLENTI 523
                  569**********************************************************9868***************99988776255889999999999988888777665255555511677899******************************************98555689999****************************************99999999998887532222211.1222222323789*****************99998877655115679999*************9987655555543.22.444422223367888999999999988643......23455543....3.34666666666666666666666665 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.0       4.3   1.2e+03     102     128 ..      17      43 ..       3      93 .. 0.65
   2 !  117.7   0.0   5.5e-37   1.5e-34       1     326 [.     138     487 ..     138     503 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 4.3
    TIGR03235 102 lepikfLeenGftvtylevdesGridv 128
                  l   +  ++nGft ++le + +G    
  MMETSP1061-20121228|17181_1  17 LAISAPAASNGFTGSILESQTKGLTRR 43 
                  444455567888888888888887654 PP

  == domain 2    score: 117.7 bits;  conditional E-value: 5.5e-37
    TIGR03235   1 YLDvnattpvdpevaevvrpflleefGnassrthefgakakkavekarkqvaealgad.keeviftsgatesnnlallGlaeygeqkgkkhiitsaiehkavlepikfLeen.Gftvtyl..evdesGridveelkeairedtllvslmavnnevGslqpireiaevleer...evflhvDaaqvvgkiavdlsakridlisvsghkiygPkGiGalvirkrrkkkaplkPllfGGGq......e........rgLrpGtLpvalivGlgeaaeiarknaeak..ekklralknklldaLkt.levklngdpaeki.pnvlnlsidgvnsealivaLk.avvavstgsaCss 326
                  YLD  at++   +v+    ++      n     h +++ a  a e  r  va+ ++a+ ++e++ftsgate+ nl+    +++ + k  + i+ +++eh++ + p + ++++ G    ++  + +++G +d+ ++++ ++e+t +vs  +v n +  ++p++e+ ++++e+   ++ +  Da q+v +++vd+++  +d+++ sghk+ gP GiG l  r++  +k  + P + GG        e            +Gt p+a +vGl +a++  +++   +  e   +++   l ++L++ ++v++ g p+ +  +    + +dgv++  l   L  + +a+ +g  C  
  MMETSP1061-20121228|17181_1 138 YLDSGATSQKPTQVIRDTSKYYERTNSNVHRGAHTLSRLATAAFEDGRDTVASFVNAHsRNEIVFTSGATEAINLVASSYSRAIKLKEGDEILLTEMEHHSNIVPWQIIAQEtGALLRFVkiDFEKTGCLDLSHMESLLNENTKIVSFQHVSNVMACINPVEEMVSMVREKaspDAVVVLDACQSVPHMKVDVQTLGVDFLAASGHKMCGPTGIGFLWGREELLNK--MPPFMGGGEMidqvtlEgstfapapARFEAGTPPIAEVVGLASAIRYLETEVGMDnvEAYEHEIAAYLYNRLSEvERVTVLGPPKGVQrAALCAFYVDGVHPSDLSTFLDmEGIAIRAGHHCCQ 487
                  9*******************************************************97368********************99999988*******************9998897776651166799****************************************998744468999**************************************999966655..4576655532221222111111111345689*************999887765540045557788899999988899999999886541667799******99999988625699999998875 PP

>> TIGR03403  nifS_epsilon: cysteine desulfurase, NifS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.0   0.0     6e-33   1.6e-30       1     374 [.     137     524 ..     137     532 .. 0.83

  Alignments for each domain:
  == domain 1    score: 104.0 bits;  conditional E-value: 6e-33
    TIGR03403   1 vyldnnattlldpkvkelmepflkdiygnpn.slhkfgtethpaiaealdklykginardeddivitscatesnnwvlkgvyfdeilkkeknhiittevehpavraacafl.eslg..vevtylpvneqgvitaeqvreaitektalvsvmwannetglifpikeigelckekg...vlfhtdavqavgkipvdvqkvkvdflsfsahkfhgpkgvgalyikkgv..eltpllhggehm.....sg........r.rsgtlnvpyivamgealklaveyldfek..ssvrklrdkledallelpdvlvvgdrehrv.pntilisikgvegeamlwdlnkagiaastgsacasedleanpvmvaigadkelahtairlslsrftteeeidyaievfkkave 374
                  +yld  at+    +v    + +++ +  n     h     + +a ++  d +   +na+  ++iv+ts ate++n v  + y   i  ke ++i+ te+eh +     +++ ++ g  ++ +++  ++ g ++  ++ + ++e+t +vs    +n    i+p++e+ ++++ek+   ++   da q+v +++vdvq + vdfl+ s hk+ gp g+g l+ ++ +  ++ p++ gge +     +g        r  +gt  ++ +v++  a++   + + +++  +  +++   l + l e+  v+v+g  +           + gv    +   l+ +gia  +g  c       +p+  a g +    h+  r sl  ++t++++d+ ie+++++++
  MMETSP1061-20121228|17181_1 137 IYLDSGATSQKPTQVIRDTSKYYERTNSNVHrGAHTLSRLATAAFEDGRDTVASFVNAHSRNEIVFTSGATEAINLVA-SSYSRAIKLKEGDEILLTEMEHHSNIVPWQIIaQETGalLRFVKIDFEKTGCLDLSHMESLLNENTKIVSFQHVSNVMACINPVEEMVSMVREKAspdAVVVLDACQSVPHMKVDVQTLGVDFLAASGHKMCGPTGIGFLWGREELlnKMPPFMGGGEMIdqvtlEGstfapapaRfEAGTPPIAEVVGLASAIRYLETEVGMDNveAYEHEIAAYLYNRLSEVERVTVLGPPKGVQrAALCAFYVDGVHPSDLSTFLDMEGIAIRAGHHCC------QPLHQACGIS----HS-ARASLYIYNTKNDVDFFIEHLENTIQ 524
                  7*********99999999999999998886526899999999*********************************986.669999999************99877766655156662245667777899*******************************************9533378999****************************************986447888888888752222234222222222347999*************9888776655104456778899**************865433033344579*************************7......5788888865....54.4999****************999887 PP

>> TIGR03301  PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.0   2.2e-14     6e-12      99     298 ..     255     460 ..     245     501 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 2.2e-14
    TIGR03301  99 phtalkfseeeevdlseieelLaedpdithvavvHhEtttgiLnpleaiakvarsh...gavlivDavSslgaipidieeldvdaliasanKclegvpGlsFviarrdlleasagnarSlyldLydqwaymeke...gkwrf...tppthvvaAlaqAleeleaeggvearlerykrnaellvdglralGlepll..eeeiqspiivsfks 298
                   +++++f+++   dls++e+lL e+++i +  + H     + +np+e++++++r++    av+++Da  s+  + +d++ l+vd+l+as  K + g +G++F+ +r++ll++          ++ dq +    +      rf   tpp+  v  la A++ le e g++   +  ++ a++l ++l ++   ++l  ++ +q + + +f+ 
  MMETSP1061-20121228|17181_1 255 RFVKIDFEKTGCLDLSHMESLLNENTKIVS--FQHVSNVMACINPVEEMVSMVREKaspDAVVVLDACQSVPHMKVDVQTLGVDFLAASGHK-MCGPTGIGFLWGREELLNKMPPFMG--GGEMIDQVTLEGSTfapAPARFeagTPPIAEVVGLASAIRYLETEVGMDNVEAYEHEIAAYLYNRLSEVERVTVLgpPKGVQRAALCAFYV 460
                  578999********************9955..668889999************987333589***************************999.6799**************9985332..2344444444333322345566666999999999999999999999998776666677889999998887666553334566666666655 PP

>> TIGR02326  transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   3.5e-11   9.5e-09     104     213 ..     256     365 ..     244     468 .. 0.77

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 3.5e-11
    TIGR02326 104 vvvveteekeatnvaevekilaadpeithvalvhsetttGilnPieavakvakryG...kvlivdamssfGgieidiaeleidylissankciqGvPGfgfviakeaelekck 213
                  +v++++e++   +++++e +l+++ +i   +  h       +nP+e++++++++      v+++da  s+  +++d++ l +d+l +s  k + G  G+gf+  +e+ l+k  
  MMETSP1061-20121228|17181_1 256 FVKIDFEKTGCLDLSHMESLLNENTKIV--SFQHVSNVMACINPVEEMVSMVREKAspdAVVVLDACQSVPHMKVDVQTLGVDFLAASGHK-MCGPTGIGFLWGREELLNKMP 365
                  66788889999999**********9996..55688889999*********9998762336999**********************999888.56999*********9998865 PP

>> TIGR02539  SepCysS: Sep-tRNA:Cys-tRNA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   7.6e-09   2.1e-06      49     224 ..     177     359 ..     159     367 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 7.6e-09
    TIGR02539  49 kkppikdfledlaeflgm...dvvrvtaGareakfavmhalc.....keGdvvvldglahytsyv....aaeraglevkevpetgspeykvkleeykevieevedesgkevalallthvdgeyGnladakkvakvcrkkgvp...lllncaytvGrlpvsakevkadfivgsGhksmaasapvGvlalkee 224
                     + +d  + +a f+++   +++  t+Ga ea   v ++ +     keGd ++l ++ h++  v     a+ +g+ ++ v  + + +  ++l   +  ++e       +++++ + hv      ++  +++++++r+k  p   ++l++  +v  ++v+ + +++df+ +sGhk m   + +G l  +ee
  MMETSP1061-20121228|17181_1 177 ATAAFEDGRDTVASFVNAhsrNEIVFTSGATEAINLVASSYSraiklKEGDEILLTEMEHHSNIVpwqiIAQETGALLRFVKIDFEKTGCLDLSHMESLLNE-------NTKIVSFQHVSNVMACINPVEEMVSMVREKASPdavVVLDACQSVPHMKVDVQTLGVDFLAASGHK-MCGPTGIGFLWGREE 359
                  555666667778888876222456789999999999988765333347999999999999998762222566777777777766666666666665555544.......56778899**********************988665789**************************9.555555666766666 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.6e-08   4.3e-06      57     183 ..     185     320 ..     177     346 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.6e-08
    TIGR03947  57 raaladrlagGdaekvlvthGsseaiylvlt.....allrPGdevvvvdpayhs....lselavalgakvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvde.relsellelaaesgavllWdaa 183
                  r+ +a+ ++    ++++ t G++eai lv +     + l+ Gde+++++  +hs     + +a+ +ga +r  ++++e+    dl +++ l+++ t++v      n   a++++ +e   ++   a+ +av++ da 
  MMETSP1061-20121228|17181_1 185 RDTVASFVNAHSRNEIVFTSGATEAINLVASsysraIKLKEGDEILLTEMEHHSnivpWQIIAQETGALLRFVKIDFEKTGCLDLSHMESLLNENTKIVSFQHVSNVM-ACINPvEEMVSMVREKASPDAVVVLDAC 320
                  788999999999999*************9862222246899************9433336799**********************************76665555655.4555526677899999999999999975 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.6e-06   0.00042      27     175 ..     130     285 ..     115     309 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.6e-06
    TIGR01265  27 peeekpviklslGdPsvfgn..lrtaeeaeeavadav.rsgkfngYapsvGvlaareavaeylskeleakleaddvvltsGcsqaielvieala.....naganiLvP....rPgfplYetlakalglevrkydllpekdweidldelealaDektvalvv 175
                   +++k++i l  G  s +++  +r +++  e   + v r  +  +  +++  +  r+ va++++       + +++v tsG+++ai+lv ++ +     + g++iL+     +     ++ +a+ +g  +r  ++  ek   +dl+++e+l +e+t+++  
  MMETSP1061-20121228|17181_1 130 NSKKKKLIYLDSGATSQKPTqvIRDTSKYYERTNSNVhRGAHTLSRLATAAFEDGRDTVASFVN-----AHSRNEIVFTSGATEAINLVASSYSraiklKEGDEILLTemehHSNIVPWQIIAQETGALLRFVKIDFEKTGCLDLSHMESLLNENTKIVSF 285
                  3344999999999999876422665555566655555155667788999999***********9.....557899**************9876522225679*****82222344566999***********************************98755 PP

>> TIGR01364  serC_1: phosphoserine transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   2.1e-06   0.00056     132     279 ..     280     438 ..     243     445 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.1e-06
    TIGR01364 132 eelelkedaayvylcanetieGvefkelpevkkaplvaDlssdilsrkidvskygl..iyaGaqKniGpaGvtvvivrkdllerakk.......elpsvldYkilaendslyn..tpptfaiyvlglvlkwlkekGGvkklekknqeKakllYeaides 279
                   ++   ++++ v  c n   e v++ ++  + +a++v D   ++   k+dv+  g+  + a   K  Gp+G+ ++  r++ll+++         +    l+ ++ a   + +   tpp++ +  l+  +++l  + G++++e+ ++e a+ lY+ + e 
  MMETSP1061-20121228|17181_1 280 TKIVSFQHVSNVMACINPVEEMVSMVREKASPDAVVVLDACQSVPHMKVDVQTLGVdfLAASGHKMCGPTGIGFLWGREELLNKMPPfmgggemIDQVTLEGSTFAPAPARFEagTPPIAEVVGLASAIRYLETEVGMDNVEAYEHEIAAYLYNRLSEV 438
                  333344788888899998888888888888889*******************998732557779*******************999989888854455567777777777775449*************************************998765 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.5e-06    0.0012      75     184 ..     181     293 ..     121     317 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.5e-06
    TIGR01264  75 aleareaiaeyyankradgeleaddvvlasGcshalelaieala.....daGenvlvP....rPGfplyetlakaldievklynlladedweidlkelesliddktkalivnnPsnPcG 184
                   +  r+ +a++ +        +++++v +sG+++a++l+  + +     ++G+++l+     +     ++ +a+ ++   ++ ++  ++   +dl+++esl +++tk++  +  sn   
  MMETSP1061-20121228|17181_1 181 FEDGRDTVASFVN------AHSRNEIVFTSGATEAINLVASSYSraiklKEGDEILLTemehHSNIVPWQIIAQETGALLRFVKIDFEKTGCLDLSHMESLLNENTKIVSFQHVSNVMA 293
                  4455555555554......55789************998765431111278****99623225667789***************************************99888888654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.13s 00:00:00.64 Elapsed: 00:00:00.45
# Mc/sec: 1595.60
//
Query:       MMETSP1061-20121228|17239_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-05   21.6   0.0    7.1e-05   20.8   0.0    1.4  1  TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein


Domain annotation for each model (and alignments):
>> TIGR02968  succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   1.7e-08   7.1e-05      52      83 ..      92     123 ..      83     144 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 1.7e-08
    TIGR02968  52 ltllallalllHawiGlrdvleDYvksealrl 83 
                  + +l+   + +H+wiG+  v +DYv ++   l
  MMETSP1061-20121228|17239_1  92 FGVLLAGNISAHSWIGMNYVATDYVPKVSKAL 123
                  6677888899***************5544333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1049.63
//
Query:       MMETSP1061-20121228|17248_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1498.08
//
Query:       MMETSP1061-20121228|17267_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 823.36
//
Query:       MMETSP1061-20121228|17265_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 2238.74
//
Query:       MMETSP1061-20121228|17273_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2542.01
//
Query:       MMETSP1061-20121228|17316_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.31
# Mc/sec: 221.40
//
Query:       MMETSP1061-20121228|17338_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 1076.22
//
Query:       MMETSP1061-20121228|17347_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0018   14.7   0.0     0.0027   14.2   0.0    1.2  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.6e-07    0.0027     364     425 ..      32      95 ..       2     102 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.6e-07
    TIGR01982 364 lkeisigklLaklfkitek..felevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkkl 425
                  + +++++kl a+l  i+++   e +++p +++++++l ++EGv+ ++dp++ l++ + p+v + 
  MMETSP1061-20121228|17347_1  32 AADVNFAKLQAELDAISREnlLEFSTPPFFTVIIRSLTILEGVALSVDPRFRLVRGSYPYVLRS 95 
                  678999999999999998722567799****************************999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1781.85
//
Query:       MMETSP1061-20121228|17350_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1363.89
//
Query:       MMETSP1061-20121228|17368_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 384.49
//
Query:       MMETSP1061-20121228|17362_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.47
# Mc/sec: 1769.22
//
Query:       MMETSP1061-20121228|17379_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.54
# Mc/sec: 1249.01
//
Query:       MMETSP1061-20121228|17372_1  [L=871]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 3381.25
//
Query:       MMETSP1061-20121228|17381_1  [L=574]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-13   48.4   0.1    4.7e-13   46.7   0.0    1.8  2  TIGR01678 FAD_lactone_ox: sugar 1,4-lactone oxidases
    2.8e-11   40.7   0.0    4.6e-11   40.0   0.0    1.2  1  TIGR00387 glcD: glycolate oxidase, subunit GlcD
      6e-08   29.8   0.0    1.2e-07   28.9   0.0    1.4  1  TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase
    5.2e-06   23.0   0.0    8.4e-06   22.3   0.0    1.2  1  TIGR01677 pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase
     0.0067   13.1   0.0     0.0096   12.6   0.0    1.2  1  TIGR01676 GLDHase: galactonolactone dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01678  FAD_lactone_ox: sugar 1,4-lactone oxidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   5.7e-16   4.7e-13      69     181 ..     152     266 ..     144     281 .. 0.92
   2 ?   -2.6   0.0       0.5   4.1e+02     210     265 ..     342     398 ..     320     405 .. 0.76

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 5.7e-16
    TIGR01678  69 vlkfdeekaditveaGirlyqlneildekGyslsnlGsisevsvaGii.stgthgsslkhgllssqvvaltivladGellelseerd.kdvfkaarvslGalGiivsvtirvvPa 181
                  +l++d +++ + ve  + + ql + l+ kGy+l+++  + + +v G+i +tg  +ss k+gl+ + + +l ++l+dG ++   ++++ kd+f+a   s G+l +++s+ ++++P 
  MMETSP1061-20121228|17381_1 152 ILEVDTDSMIVRVEPFVSIGQLTHALNPKGYTLPVVPEMDDLTVGGLInGTGIESSSHKYGLFHEIITELELLLGDGTVVVATADNEyKDLFHAVPWSYGTLALLLSAKLKMIPC 266
                  78999*****************************************98579999************************99988877649************************96 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 0.5
    TIGR01678 210 irvlwfPyt.ekvvlwranktekapsspakslwdlklgsflyetllwvskilarltp 265
                  + ++w P+  ++v  + + k e+++  p   +++ + +s ++e+ l +    +++  
  MMETSP1061-20121228|17381_1 342 LSLWWKPWFyKHVETILDSKQETVEYIPLTDYYHRHTQSLFWEMELMIPIGNNPIFR 398
                  567888865145667888899999999999999999999999998888665555555 PP

>> TIGR00387  glcD: glycolate oxidase, subunit GlcD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.0   0.0   5.6e-14   4.6e-11      51     173 ..     149     266 ..     141     281 .. 0.87

  Alignments for each domain:
  == domain 1    score: 40.0 bits;  conditional E-value: 5.6e-14
    TIGR00387  51 lnkileideenltavvqPGvinkeleeaveeknlfyppDPssqkastiGGniaenaGGlrglkYGvtvdyvlglevvladGeilriggktvkdvaGydltkLlvgsEGtLgivteiilkllpk 173
                  l +ile+d++  +++v+P v + +l++a+++k+++ p+ P  +   t+GG i+       + kYG+ ++ + +le+ l dG ++        d +  dl + +  s GtL++   + lk++p 
  MMETSP1061-20121228|17381_1 149 LYDILEVDTDSMIVRVEPFVSIGQLTHALNPKGYTLPVVPE-MDDLTVGGLINGTGIESSSHKYGLFHEIITELELLLGDGTVVV----ATADNEYKDLFHAVPWSYGTLALLLSAKLKMIPC 266
                  678*************************************7.6778******9887788899*********************99....3445555688899999999999999999999885 PP

>> TIGR01679  bact_FAD_ox: FAD-linked oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.4e-10   1.2e-07      60     176 ..     149     267 ..     143     300 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.4e-10
    TIGR01679  60 legvvdvdqqkdeatvkaGtrlgalgpllaekgrglenlgdidkqsigGal.gtathGtGvklqalharvvslrlvtasGkvldlseadd.qeiflaarvslGalGvisqvtlrtvalf 176
                  l  +++vd ++  ++v+    +g l++ l+ kg +l+ ++++d  ++gG + gt    +  k + +h  ++ l l+ + G v+ +++ ++ +++f+a+  s G+l ++   +l+ ++  
  MMETSP1061-20121228|17381_1 149 LYDILEVDTDSMIVRVEPFVSIGQLTHALNPKGYTLPVVPEMDDLTVGGLInGTGIESSSHKYGLFHEIITELELLLGDGTVVVATADNEyKDLFHAVPWSYGTLALLLSAKLKMIPCK 267
                  567999**9999*************************************7648999**************************99988776479***************99999998864 PP

>> TIGR01677  pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0     1e-08   8.4e-06      93     213 ..     151     265 ..     144     286 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 1e-08
    TIGR01677  93 svvavdaealtvtvesGvslrelieeaekaGlalpaapyweGlsvGGll.stGahGsslwGkGsavhdyvvelrlvvpasaaeGfakvvvleeadddaelnaakvslGvlGviskvtlalep 213
                   +++vd++ + v ve  vs+ +l ++ +  G +lp+ p    l+vGGl+ +tG   ss   k +  h+ ++el l+      +G   vv+  + + + +++a+  s G l ++   +l++ p
  MMETSP1061-20121228|17381_1 151 DILEVDTDSMIVRVEPFVSIGQLTHALNPKGYTLPVVPEMDDLTVGGLInGTGIESSS--HKYGLFHEIITELELLL----GDGTV-VVATADNEYKDLFHAVPWSYGTLALLLSAKLKMIP 265
                  4699********************************************9456766665..58899*********986....46654.44445555678999999999999988888887765 PP

>> TIGR01676  GLDHase: galactonolactone dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.2e-05    0.0096     106     237 ..     143     275 ..      88     291 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
    TIGR01676 106 gmvnlalmdkvlevdkekkrvrvqagirvqqlvdaikeygltlqnfasireqqiggivq.vgahgtgaklppideqviamklvtpakgtieis..kekdpelfylarcglgglgvvaevtlqcverqelvehtyl 237
                    +++ l d +levd +   vrv+  + + ql  a++  g tl  +  + +  +gg+++  g   +  k     e +  + l+    gt+ ++  ++   +lf+      g l ++    l+ +  +  v+ ty 
  MMETSP1061-20121228|17381_1 143 NAIEMPLYD-ILEVDTDSMIVRVEPFVSIGQLTHALNPKGYTLPVVPEMDDLTVGGLINgTGIESSSHKYGLFHEIITELELLLG-DGTVVVAtaDNEYKDLFHAVPWSYGTLALLLSAKLKMIPCKSYVKLTYT 275
                  556777777.79********************************************99746888899999999999999998765.5665554114556789999999999999999999999999988888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (574 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.56
# Mc/sec: 1352.89
//
Query:       MMETSP1061-20121228|17392_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-12   43.2   0.0    9.3e-12   42.8   0.0    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.2e-09   33.6   0.2    4.1e-09   33.2   0.1    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0078   14.2   0.7      0.027   12.4   0.0    1.9  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0   6.8e-15   9.3e-12       2      84 ..      25     109 ..      24     140 .. 0.73

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 6.8e-15
    TIGR02349   2 YYeiLgvsk....dAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggagg....ggagfegf 84 
                  YY  L ++k    d +++ ik+ Yr+l+ ++HPD+  g+    + f+  ++A  vLs+++ r+qYD +g +  +++  +    g   +eg+
  MMETSP1061-20121228|17392_1  25 YYTYLNITKvpgeDPDADVIKRNYRRLSIRHHPDKPGGD---ADTFQTLKRAQTVLSNPKLRQQYDILGLDLDDEEVEQnttdG---AEGN 109
                  9999999985555678899****************9955...578************************998887655422221...2222 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.1     3e-12   4.1e-09       4      74 ..      25      97 ..      23     104 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 3e-12
    TIGR03835  4 yyevLgidr....DadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDre 74
                 yy  L+i++    D d + ik+ +r+L+ ++hPD+    d a+ f+ +  a+ vLsnPk r++yD  G D  D+e
  MMETSP1061-20121228|17392_1 25 YYTYLNITKvpgeDPDADVIKRNYRRLSIRHHPDKPG-GD-ADTFQTLKRAQTVLSNPKLRQQYDILGLDLDDEE 97
                 8888888754444888889***************754.34.4579************************966665 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0     2e-05     0.027       4      71 ..      40      98 ..      39     107 .. 0.76
   2 ?   -0.6   0.0      0.21   2.8e+02      96     126 ..     292     322 ..     288     327 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2e-05
    TIGR00714  4 DekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaeyllkLqrnidLasEqk 71
                 D ++++++yr+l  ++HPD  +  ++      +  +l  A   L +p +R +y ++   ++dL++E+ 
  MMETSP1061-20121228|17392_1 40 DADVIKRNYRRLSIRHHPDKPGGDAD------TFQTLKRAQTVLSNPKLRQQYDIL---GLDLDDEEV 98
                 778999*************6666666......566788888899999999999553...557888873 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.21
    TIGR00714  96 kdeaaleklkkkvkkeiqsllaalvealkeq 126
                   +ea l++  kkv ++i s++ ++   +++q
  MMETSP1061-20121228|17392_1 292 ILEAILNEKLKKVGEKIRSQHRLMERYYQQQ 322
                  5678888888999999999999888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1627.87
//
Query:       MMETSP1061-20121228|17388_1  [L=784]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.9   4.3       0.38    9.1   3.0    2.0  1  TIGR03901 Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain
        4.5    5.6   8.1          9    4.6   5.6    1.5  1  TIGR04174 IPTL_CTERM: IPTL-CTERM protein sorting domain


Domain annotation for each model (and alignments):
>> TIGR03901  Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   3.0   0.00019      0.38      15      32 ..     624     641 ..     618     642 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00019
    TIGR03901  15 galgLlgLgllalrRRRR 32 
                  +++ Ll+ +++a rRRRR
  MMETSP1061-20121228|17388_1 624 AGFVLLLILMAASRRRRR 641
                  8999*************9 PP

>> TIGR04174  IPTL_CTERM: IPTL-CTERM protein sorting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   5.6    0.0044         9       9      27 .]     623     641 ..     623     641 .. 0.93

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0044
    TIGR04174   9 LlLLslLlgllgarrrRRr 27 
                  L+ ++lLl l++a rrRRr
  MMETSP1061-20121228|17388_1 623 LAGFVLLLILMAASRRRRR 641
                  67899*************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.20s 00:00:00.57 Elapsed: 00:00:00.46
# Mc/sec: 2249.55
//
Query:       MMETSP1061-20121228|17408_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1136.05
//
Query:       MMETSP1061-20121228|17407_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   12.6   0.0      0.008   11.8   0.0    1.3  1  TIGR00845 caca: sodium/calcium exchanger 1
  ------ inclusion threshold ------
       0.19    7.9  16.0       0.28    7.4  11.1    1.3  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
          6    2.1  20.2        8.2    1.7  14.0    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00845  caca: sodium/calcium exchanger 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   5.9e-06     0.008     705     744 ..      20      59 ..      16      62 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.9e-06
    TIGR00845 705 gddddddedgeeklPscfdyvmhfltvfwkvlfafvPPtd 744
                  + d ddd+++ +++Ps + y+  fl v w +l a++ P++
  MMETSP1061-20121228|17407_1  20 SPDRDDDKKKRKRMPSSVAYILGFLIVAWFLLPAILSPSQ 59 
                  45788899999************************99975 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4  11.1   0.00021      0.28      33     127 ..      77     170 ..      43     205 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00021
    TIGR03490  33 qpekkpeakpeenkPkkpkkpdnkeksensnnksnseekdeeepkskkpekkpdpsknkeeiekpkkepkkpdkkpqadepnndhadqknnnkvd 127
                  ++ +k +++ ++++P + +k+++    +n   + n+  + ++ p+  ++e k++ +++  +++  ++++   d  +qa  + ++++d  +++++d
  MMETSP1061-20121228|17407_1  77 PQTQKAAQRENKQQPPTEEKKKDD-DDDNPVTSANAMVDGDSPPSGDEVEGKKQDGNDGAKDDDDDDDKADADADEQAGADADVDPDVAKDDDDD 170
                  345666778888888877777744.566666777*******************999776666655555555555566655555555544444443 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7  14.0     0.006       8.2     785     907 ..      65     191 ..      55     230 .. 0.41

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.006
    TIGR00927 785 eseekaeee.seGeieaerkgedegegeieakeaevkGee..eeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedete..ieaeeeaevkededeGeieaeedgevkGd 907
                  ++e+k e+  ++ +++   + e++++  +e+k+ + + ++   + +   ++++ + Gde eg+ + +++G + +d+d+++++a+ + e+ g + + +  +  +++ + ++ +   e++ + d +++ +
  MMETSP1061-20121228|17407_1  65 KAEHKVEDYlRQPQTQKAAQRENKQQPPTEEKKKDDDDDNpvTSANAMVDGDSPPSGDEVEGKKQDGNDGAKDDDDDDDKADAD-ADEQAGADADVDpdVAKDDDDDERGRKYAPELQKGADKKTNPN 191
                  333333322122233333333333333333333333333200233444556666777777777777777777776666666663.2222222211110011122222222222223333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|17430_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 237.58
//
Query:       MMETSP1061-20121228|17431_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-10   36.6   0.4    4.7e-08   30.1   0.3    2.0  1  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    5.2e-08   30.6   0.2    9.1e-05   20.0   0.2    2.1  2  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family
    2.7e-05   20.9   0.2      0.031   10.8   0.2    2.0  2  TIGR01137 cysta_beta: cystathionine beta-synthase
     0.0004   17.4   0.4     0.0079   13.2   0.3    2.0  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
     0.0019   14.8   0.3     0.0043   13.7   0.1    1.6  2  TIGR00400 mgtE: magnesium transporter
     0.0087   12.9   0.1       0.01   12.6   0.1    1.1  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
     0.0088   12.8   0.2      0.017   11.9   0.1    1.4  1  TIGR01303 IMP_DH_rel_1: IMP dehydrogenase family protein


Domain annotation for each model (and alignments):
>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.3     8e-11   4.7e-08      87     199 ..      43     177 ..      27     190 .. 0.72

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 8e-11
    TIGR01302  87 isdpvtvsPettvedvlelkekkgisgvpvvedgkeegklvGivtk.......................kdlrfvkd..kskkvsevmtkeevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdieka 199
                    +p+t++ + tv+++     + gi+g+pvv+  +  ++lvG v++                       k+++   +   +++v e+ t e  +t ++++++++a e+l++k++++l vvd+ ++lvg+++++d++++
  MMETSP1061-20121228|17431_1  43 TPNPKTLKTTDTVDEAIFALLSAGINGAPVVDPIT--NNLVGCVSAfdfiqkeetgallpfdmedpekqKEMSISARkiVATTVGELAT-EPALTIHVNTNMKDAAEMLTKKQKHRLCVVDDGNNLVGILSTSDVMRN 177
                  44666666677777777777777888888887733..3688888776666666666666644433333322222222003445677777.88899999*************************************997 PP

>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00042      0.24     220     267 ..      36      84 ..      23      85 .. 0.85
   2 !   20.0   0.2   1.5e-07   9.1e-05     218     267 ..     120     169 ..     106     183 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00042
    TIGR00393 220 kevkdvmtlggktlksdallveakellkkrkitslvvvdd.enkllGvl 267
                  + v+d mt+++ktlk+   + ea   l +  i+ ++vvd   n+l+G +
  MMETSP1061-20121228|17431_1  36 RLVRDCMTPNPKTLKTTDTVDEAIFALLSAGINGAPVVDPiTNNLVGCV 84 
                  569***********************************96467888876 PP

  == domain 2    score: 20.0 bits;  conditional E-value: 1.5e-07
    TIGR00393 218 lkkevkdvmtlggktlksdallveakellkkrkitslvvvddenkllGvl 267
                  + ++v +++t  + t++ ++ + +a e+l+k++ + l vvdd n+l+G+l
  MMETSP1061-20121228|17431_1 120 VATTVGELATEPALTIHVNTNMKDAAEMLTKKQKHRLCVVDDGNNLVGIL 169
                  567899999999************************************97 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00029      0.17     340     392 ..      38      91 ..      17     103 .. 0.86
   2 !   10.8   0.2   5.2e-05     0.031     330     395 ..     114     179 ..      98     192 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00029
    TIGR01137 340 vkdlalkalvtvketetvadaieilrekGfdqlPvvk.eagkvlgsvtlrells 392
                  v+d   +++ t+k t tv +ai  l   G++ +Pvv+  +++++g v+  + ++
  MMETSP1061-20121228|17431_1  38 VRDCMTPNPKTLKTTDTVDEAIFALLSAGINGAPVVDpITNNLVGCVSAFDFIQ 91 
                  6788889999**************************977889999998877766 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 5.2e-05
    TIGR01137 330 dvlkvfgnarvkdlalkalvtvketetvadaieilrekGfdqlPvvkeagkvlgsvtlrellsall 395
                   + ++   ++v +la ++ +t++ +++++da e+l +k   +l vv+  ++++g  + ++++++++
  MMETSP1061-20121228|17431_1 114 ISARKIVATTVGELATEPALTIHVNTNMKDAAEMLTKKQKHRLCVVDDGNNLVGILSTSDVMRNII 179
                  2344788999*********************************************99999988765 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.028        16     301     353 ..      35      89 ..      25      97 .. 0.84
   2 !   13.2   0.3   1.4e-05    0.0079     300     358 ..     120     179 ..     107     184 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.028
    TIGR01186 301 aqlledvlkediltvdeqtllsellskvlkagik.vpvvde.dqrlvGivsrasl 353
                   +l+ d ++ ++ t+++  ++ e +  +l agi+  pvvd   ++lvG vs   +
  MMETSP1061-20121228|17431_1  35 PRLVRDCMTPNPKTLKTTDTVDEAIFALLSAGINgAPVVDPiTNNLVGCVSAFDF 89 
                  56788999999999999999999999*******99*****647889999986555 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1.4e-05
    TIGR01186 300 kaqlledvlkediltvdeqtllsellskvlkagik.vpvvdedqrlvGivsraslvdald 358
                   a+++ ++ +e  lt++ +t +++  + ++k++ + + vvd+ ++lvGi+s + +++ + 
  MMETSP1061-20121228|17431_1 120 VATTVGELATEPALTIHVNTNMKDAAEMLTKKQKHrLCVVDDGNNLVGILSTSDVMRNII 179
                  467788888889999999999999999998877666999999999999999887776655 PP

>> TIGR00400  mgtE: magnesium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.26   1.5e+02     199     248 ..      40      90 ..      34     115 .. 0.72
   2 !   13.7   0.1   7.4e-06    0.0043     196     252 ..     123     179 ..      98     192 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.26
    TIGR00400 199 dimvssvvsvdavqdqeevarliqkydflavPvvde.enrlvGivtvddii 248
                  d m ++   +++ +  +e    +    +   Pvvd   n lvG v   d i
  MMETSP1061-20121228|17431_1  40 DCMTPNPKTLKTTDTVDEAIFALLSAGINGAPVVDPiTNNLVGCVSAFDFI 90 
                  556666656666555556555555667888899996478899999876665 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 7.4e-06
    TIGR00400 196 kvsdimvssvvsvdavqdqeevarliqkydflavPvvdeenrlvGivtvddiidvve 252
                  +v+++    ++ ++ +++ ++ a ++ k     + vvd+ n lvGi+   d++  ++
  MMETSP1061-20121228|17431_1 123 TVGELATEPALTIHVNTNMKDAAEMLTKKQKHRLCVVDDGNNLVGILSTSDVMRNII 179
                  67888889999************************************9999765443 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   1.7e-05      0.01     320     380 ..     117     179 ..      79     181 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.7e-05
    TIGR03415 320 aataaeqeveslekasllvkpdtslrevleilkk.taeav.llvenerivGviaaeeiveall 380
                   +  a +  e   + +l ++ +t+++++ e+l+k +++ + ++++ +++vG++++++++++++
  MMETSP1061-20121228|17431_1 117 RKIVATTVGELATEPALTIHVNTNMKDAAEMLTKkQKHRLcVVDDGNNLVGILSTSDVMRNII 179
                  2233333445555666777********988765524455515666789**********99887 PP

>> TIGR01303  IMP_DH_rel_1: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.1   2.8e-05     0.017     146     202 ..     122     178 ..      85     185 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.8e-05
    TIGR01303 146 tqveevmstdlvtlpadlepreafdlleeasrklapvvdadgslagiltrtgalrat 202
                  t v+e++++  +t+  +++ ++a ++l +++++   vvd   +l gil+    +r  
  MMETSP1061-20121228|17431_1 122 TTVGELATEPALTIHVNTNMKDAAEMLTKKQKHRLCVVDDGNNLVGILSTSDVMRNI 178
                  8899***********************************999*******99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.18u 0.21s 00:00:00.39 Elapsed: 00:00:00.23
# Mc/sec: 1147.73
//
Query:       MMETSP1061-20121228|17442_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 315.63
//
Query:       MMETSP1061-20121228|17449_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2414.91
//
Query:       MMETSP1061-20121228|17470_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       275  (0.0670405); expected 82.0 (0.02)
Passed bias filter:                      214  (0.0521697); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 323.97
//
Query:       MMETSP1061-20121228|17464_1  [L=917]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    9.9   6.1       0.97    7.4   0.0    4.2  4  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family


Domain annotation for each model (and alignments):
>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.2     0.024        99      18      34 ..      51      65 ..      42      73 .. 0.72
   2 ?    7.4   0.0   0.00024      0.97       2      17 ..     115     130 ..     114     140 .. 0.84
   3 ?    0.5   0.1     0.035   1.5e+02       6      14 ..     264     272 ..     257     287 .. 0.81
   4 ?   -1.4   0.0      0.13   5.5e+02      26      41 ..     733     746 ..     731     751 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.024
    TIGR02605 18 lqkmsddplasCPeCgs 34
                 l+ ++d   ++CP C++
  MMETSP1061-20121228|17464_1 51 LRFLHD--DKKCPICKQ 65
                 455555..899****97 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00024
    TIGR02605   2 PiYeYrCtaCghefev 17 
                  P++e++C++C+   ++
  MMETSP1061-20121228|17464_1 115 PLFEFSCRKCKFAVDE 130
                  9*********987776 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.035
    TIGR02605   6 YrCtaCghe 14 
                  Y+C  C+++
  MMETSP1061-20121228|17464_1 264 YKCHVCEKQ 272
                  899999876 PP

  == domain 4    score: -1.4 bits;  conditional E-value: 0.13
    TIGR02605  26 lasCPeCgseelerll 41 
                  l+sCP+++s  ++r +
  MMETSP1061-20121228|17464_1 733 LKSCPNSSS--AQRAI 746
                  689**7776..77766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (917 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 3025.85
//
Query:       MMETSP1061-20121228|17461_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          2    3.7  22.5        3.5    2.9  15.6    1.3  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9  15.6   0.00085       3.5     959    1006 ..      75     121 ..      47     129 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.00085
    TIGR00927  959 kedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeeeeeneep 1006
                   +e+e   d+ +  d  + ++ eeee eeeeeeeeeeeee +  ene+ 
  MMETSP1061-20121228|17461_1   75 EEEEYEYDEYEYVDDYNNNDAEEEEAEEEEEEEEEEEEE-QVYENEDD 121 
                   445555566666666666666666655444444443333.33444554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.25
# Mc/sec: 2803.45
//
Query:       MMETSP1061-20121228|17475_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.21
# Mc/sec: 2243.81
//
Query:       MMETSP1061-20121228|17474_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1541.87
//
Query:       MMETSP1061-20121228|17490_1  [L=1124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 4120.99
//
Query:       MMETSP1061-20121228|17518_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 364.54
//
Query:       MMETSP1061-20121228|17508_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.1   0.1     0.0051   13.6   0.1    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase


Domain annotation for each model (and alignments):
>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.2e-06    0.0051      13      89 ..     105     184 ..      94     193 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.2e-06
    TIGR03466  13 GsavvrllleeGeevrvlvrk..tsdrrnleel.dvEiveGdlkdeaslkkalkGcealfHvAAdyrlwakdpeelykan 89 
                  Gs++vr+l e+G +v + vr   + +++ l +l  v + + d +deasl k  +Gc++ f v   ++ +  + ee +++n
  MMETSP1061-20121228|17508_1 105 GSTMVRVLSEKGLRVVAAVRVftSKNTKALIKLrGVTVKVADWNDEASLLKVASGCSRAFLVTKYWEKFDSKIEEQMAIN 184
                  99***********9988887521333445666624677789*****************9999877666666666666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1499.40
//
Query:       MMETSP1061-20121228|17528_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 867.36
//
Query:       MMETSP1061-20121228|17540_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 493.22
//
Query:       MMETSP1061-20121228|17568_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 842.70
//
Query:       MMETSP1061-20121228|17578_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.0   1.4      0.035   10.8   0.9    1.0  1  TIGR02718 sider_RhtX_FptX: siderophore transporter, RhtX/FptX family


Domain annotation for each model (and alignments):
>> TIGR02718  sider_RhtX_FptX: siderophore transporter, RhtX/FptX family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.9   8.5e-06     0.035     252     293 ..       5      49 ..       2      58 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.5e-06
    TIGR02718 252 gglvtvllGagggallvrrlGltralilgvs...lagslallafa 293
                  g+ v + lG+ +gall  ++Gl+ ++ lgv    l gs a l +a
  MMETSP1061-20121228|17578_1   5 GAGVGIELGVEVGALLGLKVGLWVGVELGVEvgaLLGSEAALEWA 49 
                  6667788********************998611145666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1061-20121228|17583_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 549.95
//
Query:       MMETSP1061-20121228|17585_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 207.41
//
Query:       MMETSP1061-20121228|17608_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 2050.91
//
Query:       MMETSP1061-20121228|17623_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-46  152.6   0.1      1e-45  152.3   0.1    1.1  1  TIGR03047 PS_II_psb28: photosystem II reaction center protein Psb28


Domain annotation for each model (and alignments):
>> TIGR03047  PS_II_psb28: photosystem II reaction center protein Psb28
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.3   0.1   2.5e-49     1e-45       1     108 [.      39     146 ..      39     147 .. 0.99

  Alignments for each domain:
  == domain 1    score: 152.3 bits;  conditional E-value: 2.5e-49
    TIGR03047   1 iqfiegidEevvpdvrltrsrdgstgtallrfeepkalekeksktkeitglyliDeEGeletrevkakfvnGklkaveavyelkseeewdRfmRFmeryaeanglgys 108
                  iqfi+g dE+v+pdvrltr +dgs+g a+++f++p+++++++++++e+tg+++iD+EGe++t++v+a+f nGk++++e +y+++s e+wdRfmRFme+y+eanglg++
  MMETSP1061-20121228|17623_1  39 IQFIRGFDEKVIPDVRLTRAKDGSSGIATFIFDNPNVFDASTTSEGEVTGMFMIDDEGEMSTTQVNARFANGKPQSIESTYVMNSPEKWDRFMRFMEKYGEANGLGFK 146
                  9*********************************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 824.93
//
Query:       MMETSP1061-20121228|17619_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 741.65
//
Query:       MMETSP1061-20121228|17667_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 415.77
//
Query:       MMETSP1061-20121228|17660_1  [L=780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 2639.78
//
Query:       MMETSP1061-20121228|17666_1  [L=935]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (935 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       277  (0.067528); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.43
# Mc/sec: 2870.00
//
Query:       MMETSP1061-20121228|17720_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1498.08
//
Query:       MMETSP1061-20121228|17736_1  [L=199]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (199 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 1313.29
//
Query:       MMETSP1061-20121228|17744_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-22   75.8   0.0      4e-21   73.2   0.0    2.1  2  TIGR03990 Arch_GlmM: phosphoglucosamine mutase
    3.6e-21   73.0   0.3    5.7e-20   69.0   0.2    2.0  1  TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific
    7.6e-11   39.2   0.0      4e-07   26.9   0.0    2.6  3  TIGR01455 glmM: phosphoglucosamine mutase


Domain annotation for each model (and alignments):
>> TIGR03990  Arch_GlmM: phosphoglucosamine mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.2   0.0   2.9e-24     4e-21       5     404 ..      18     494 ..      15     502 .. 0.71
   2 ?   -2.0   0.0       0.2   2.7e+02     410     441 ..     525     559 ..     510     561 .. 0.79

  Alignments for each domain:
  == domain 1    score: 73.2 bits;  conditional E-value: 2.9e-24
    TIGR03990   5 gtsGiRgvvgeeltpelalkvakalgtvl.......ekkkvvvgrDtRtsge.llenaviagllstGvd...VvdlglvptPtlqyavkee.....gadaGimiTASHNP...peyNgiKllnsdGvelsre.......eeeeieeilekeefelaewdevg..kvkeee........dalekyieailkkvdveaik....kkklkVvvDcgngagslvtpe.llrelgvk.vitlnaepdGtFpgrnpEPteenLkelsklv...ketgad.........lgiahDgDaDRlvlvdekgefieedktlallakal....lekkk.ggkvvtnvssSravedvleeagvevirtkvGevnvaeklkeega.........vfGgEgnGgvifpelqlvrDgllaaalllella...........eegkklsellaelpkyallkekvel.eeekleevleaveeelseaevdtiDGvrid 404
                  gtsG R+ ++e +tp+++ ++ +a+   +       ++++ ++g D R   + ++++++  g ++ Gv+   V + gl++tP++++ ++e+     +a ++ ++TASHNP   +e+ giK   ++G    +e       ++ +ie+    ++f + +  + g  +v+e +        +++e++++ + + +d +aik    + ++++++D+ +g+ +  + e ++++l  +  +++na+p+  F g +++P+    kel +++   ++ ++          +g a DgD+DR +++  k  +   d + +++a+a     +++++  ++v+ ++ +S av+ v++e+g  +  t+ G  +  + + ++           ++G E  G     ++   +Dg+ a++  l++la           + ++      +++ + ++ +  +e  +++k+e++++++++e++ ++ ++i  + i+
  MMETSP1061-20121228|17744_1  18 GTSGLRKKTKEFMTPNYLENFVQAAYDSIkesgtdvSQGSLLIGGDGRYFNPeAIQTIIKMG-VANGVKriwVGENGLMSTPAVSATIREKgpvwqKAFGAFILTASHNPggpEEDFGIKYNCENGGPAPDEmtdaiyeKTTKIESYSICKDFPEIDLTKPGitTVEEGSevvsveviSTTESHVNLLKTIFDFDAIKalldRPDFSMIYDSMHGVNGPYAKEvFINQLSQSpDVCMNADPKDDFNGGHADPNLTYAKELVAIMglnRKGEVIdtgdkavpsFGAAADGDGDRNMILGTKFFVSPSDSLAIIAANANlipfFKAQGgLKAVARSMPTSGAVDLVAKEMGFDLFETPTGWKYFGNLMDSKAIykgkdytpfICGEESFG--TGSDHVREKDGIWAVLAWLAILAgmnpdadkplvTVEEITTAHWKKYGRNYYCRWDFEGvDKSKAEAMMDKMRSEFEANTGKKIGSYEIS 494
                  9**********************998888898988899**********97651566655555.56677633355669**********99752222268889999*****644489******999997665551111111456667777778888888877663333333311111111456788888877778777762222589**********97766665156888888789*****************855444444444111443332688889999******************9999999999998887634434545424588899***************************988888755333344555345555556..46899999************9996665433222211222222234444445556666657888888999999999988877766666665 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.2
    TIGR03990 410 vlvRpSgT...EpivRiyaEakteeeaeelleevl 441
                  v +R SgT      +R+y+E  + e++ ++++e+l
  MMETSP1061-20121228|17744_1 525 VIFRLSGTagsGATIRMYIEQYEAEKIGAVASEAL 559
                  78899999655689******999999999888765 PP

>> TIGR01132  pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.0   0.2   4.2e-23   5.7e-20      43     459 ..      18     468 ..      12     488 .. 0.71

  Alignments for each domain:
  == domain 1    score: 69.0 bits;  conditional E-value: 4.2e-23
    TIGR01132  43 GtsGhrGsalkgtfneahilaiaqavvevraaqGi...tGplyiGkdthalsepafvsvlevlaanqvevivqennrytptpavshailtynkgkkealadG.ivitpshnp...pedGGikynppnGGpaetevtkaiedranellkdr.lkgvkrldlek........alksetvkekdlvkpyvddladvvdlaair....kaglrlGvdplGGagvdywkeiaekynldltlvneavdatfrfmtldkdGkirmdcsspyamagllk......lkdky..dlafgndadadrhGivtpdkGllnpnhylav..aieylykhrqqwaaevavGktlvssalidrvvadlgrklvevpvGfkwfvdGlldgslGfGGeesa....G.asflrkdGtvwstdkdGiilallaaeitavt...Gknpqqrydela....akyGdpiyaridaaatsaqk 459
                  GtsG r  +++  +  +++    qa  +  ++ G+    G l iG d   +   a ++++++ +an+v+ i   +n+   tpavs +i   +kg   ++a G  ++t shnp    ed Gikyn  nGGpa  e+t+ai +++ ++ +    k    +dl k          +   v+     + +v+ l  + d++ai+    + ++ +  d + G +  y ke+  +   +   v  + d+   f     d ++       +a+ gl +        dk    +  + d d+dr  i+   k ++ p   la+  a   l    +  ++  av +++ +s  +d v+ ++g +l+e p G+k+f + l+d++  + G++ +    G  sf    G+    +kdGi   l    i+a       +p    +e++    +kyG  +y r d     + k
  MMETSP1061-20121228|17744_1  18 GTSGLRKKTKE-FMTPNYLENFVQAAYDSIKESGTdvsQGSLLIGGDGRYFNPEAIQTIIKMGVANGVKRIWVGENGLMSTPAVSATIR--EKGPVWQKAFGaFILTASHNPggpEEDFGIKYNCENGGPAPDEMTDAIYEKTTKIESYSiCKDFPEIDLTKpgittveeGSEVVSVEVISTTESHVNLLKTIFDFDAIKalldRPDFSMIYDSMHGVNGPYAKEVFINQLSQSPDVCMNADPKDDFNGGHADPNLTYA-KELVAIMGLNRkgevidTGDKAvpSFGAAADGDGDRNMILGT-KFFVSPSDSLAIiaANANLIPFFKAQGGLKAVARSMPTSGAVDLVAKEMGFDLFETPTGWKYFGN-LMDSKAIYKGKDYTpficGeESF--GTGSDHVREKDGIWAVLAWLAILAGMnpdADKPLVTVEEITtahwKKYGRNYYCRWDFEGVDKSK 468
                  88888865433.3344455567777777777777633369*********************************************9985..677788888773688*****74425899**********************999886544134455555554111100002233333444455789*************8333245788999*************9877666666788888998888888888887664.44566667766455333444441134456799999*999988.99********98323457888999999************************************65.78888777777654111121223..35888899999997766666666644111334555666665333368899999998765444433 PP

>> TIGR01455  glmM: phosphoglucosamine mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   2.9e-10     4e-07       2     128 ..      18     156 ..      17     171 .. 0.79
   2 !    9.3   0.0   6.6e-05      0.09     232     321 ..     298     390 ..     287     429 .. 0.80
   3 ?   -2.0   0.0      0.17   2.4e+02     402     434 ..     521     556 ..     514     563 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 2.9e-10
    TIGR01455   2 GtDGvRgkankeeltaelalklGaaagrvlkkrestk..kkvviGkDtRl.sgemlesalvaGLtsaGvevlkl...GvlptPavayltral.....radaGvvisashnP...yeDnGiklFgaeGlklddeleeeieal 128
                  Gt G+R k+  e +t+++  ++ +aa  ++k++++       +iG D R    e +++ +  G+ ++Gv+ + +   G+++tPav+  +r+      +a    ++ ashnP    eD Gik+  ++G   +de+ ++i ++
  MMETSP1061-20121228|17744_1  18 GTSGLRKKTK-EFMTPNYLENFVQAAYDSIKESGTDVsqGSLLIGGDGRYfNPEAIQTIIKMGV-ANGVKRIWVgenGLMSTPAVSATIREKgpvwqKAFGAFILTASHNPggpEEDFGIKYNCENGGPAPDEMTDAIYEK 156
                  9*****9998.99******************99887534579*******725688888888885.78888665522279******999997522222466667789****644479*****************99999654 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 6.6e-05
    TIGR01455 232 dlGlafDGDaDRvlavDekGdivdGDkillllaka.....lkesgeLkentvvatvmsnlglekaleklglklartavGDryvleellekglnlG 321
                   +G a DGD+DR ++   k  +   D++ ++ a+a      k++g Lk   v   + +  +++   +++g +l+ t  G +y  + +  k +  G
  MMETSP1061-20121228|17744_1 298 SFGAAADGDGDRNMILGTKFFVSPSDSLAIIAANAnlipfFKAQGGLKA--VARSMPTSGAVDLVAKEMGFDLFETPTGWKYFGNLMDSKAIYKG 390
                  5799***************999999*99999998733333478888885..666666888899999****************9888877766555 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 0.17
    TIGR01455 402 kkGRillRpsGte...pliRvmveaedeelveqlad 434
                     R++ R sGt      iR+ +e  ++e++ ++a+
  MMETSP1061-20121228|17744_1 521 CGSRVIFRLSGTAgsgATIRMYIEQYEAEKIGAVAS 556
                  55799*****99633368999999999988877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 2270.99
//
Query:       MMETSP1061-20121228|17775_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   12.2   0.7      0.012   12.1   0.5    1.0  1  TIGR00398 metG: methionine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.5     3e-06     0.012      79     126 ..      11      62 ..       3      64 .] 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3e-06
    TIGR00398  79 kllnisfdrFirTtdeehkeivqkifekllenG..yiye..keikglYcvec 126
                  kll  +fd++ + td+e+ +i ++i  +l++ G  ++++  ++ +++Y  ++
  MMETSP1061-20121228|17775_1  11 KLLSKHFDNYNKATDKEKGKIQKEILDQLWDTGvrFMRKdkEQKEKWYEERD 62 
                  667779**************************93333321134556777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|17771_1  [L=1069]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.058    9.4   0.0      0.088    8.9   0.0    1.2  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ


Domain annotation for each model (and alignments):
>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0   2.1e-05     0.088     648     686 ..     581     619 ..     575     633 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 2.1e-05
    TIGR02440 648 fppflggpfryldslgadkvvkilkrlatqygerfepce 686
                  +p +l   fr ++ +g d+vv +l+ l +++ge +ep  
  MMETSP1061-20121228|17771_1 581 LPQLLTEYFRIMNEIGNDEVVSALQVLLDKFGEHIEPHA 619
                  57889999****************************953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1069 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 3441.37
//
Query:       MMETSP1061-20121228|17796_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1214.30
//
Query:       MMETSP1061-20121228|17803_1  [L=1146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     7e-208  690.9   0.2   2.5e-205  682.5   0.1    2.5  1  TIGR00580 mfd: transcription-repair coupling factor
   3.4e-110  367.4   0.0   7.3e-110  366.3   0.0    1.4  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
    2.2e-20   70.5   1.1    2.9e-12   43.7   0.0    3.5  4  TIGR00595 priA: primosomal protein N'
    2.2e-12   43.2   0.0    1.3e-08   30.7   0.0    2.7  3  TIGR01054 rgy: reverse gyrase
    1.7e-05   21.3   0.1    3.7e-05   20.2   0.1    1.5  1  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    6.2e-05   19.8   1.2    7.2e-05   19.6   0.0    1.6  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    9.4e-05   19.4   0.0     0.0017   15.3   0.0    2.3  2  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme
     0.0011   15.1   0.1     0.0018   14.4   0.0    1.2  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase


Domain annotation for each model (and alignments):
>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  682.5   0.1  4.9e-208  2.5e-205     325     920 ..     286     958 ..     102     961 .. 0.94

  Alignments for each domain:
  == domain 1    score: 682.5 bits;  conditional E-value: 4.9e-208
    TIGR00580 325 elkegdlvVHkdhGiGkflgleklkvagierdyleleYagedk..................................................lyvPveqlelisryvgsee.kkpeldklggkswektkakvkkkvkeiaekLielyakRkaskghafskdeee.qaefedafpfeeTeDQlkaieevkkDle.kekpmDRlvcGDvGfGKTEvamrAafkavldgkQvavlvPTTlLaeQHfetlkeRf...knfpvkiellsrfrk..akekkeilkelaeGkidiliGThkllqkdvkfkdlgLliiDEEqrFGVkqKeklKelktsvdvLtlsATPIPRtLemslsgirdlSiiatPPedRlpvktfvkeyddelvkeairrEllRgGqvfyvhnriesieklkeqlrelvPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfGlaqLyQLrGRvGRskkkayayllvpsqkkltekalkRLeaiqefselGaGfkiAlkDleiRGaGnlLGeeQsGeieevGfdlYvelleeaieelk....................qkpkkleeeveielplsaf.ipedyiaddelklelYkriasaeseeEvekikeelidrfGklpeeveeLlevaklkllakklgie 920
                  e+ +gd+vVH ++GiG+f + +++   +++rd ++ + a +++                                                  + vPv++++ +sry++++   kp+l+k+ g++w+++++kv+ +  e+a++++ lya R++ + + f++d+e  ++efe+ f fe T+DQ+k+ e+v++D+  +++pmDRl+cGDvGfGKTEva+rA +  v +g+Q a+l+PT +La+QH++++ +R+   ++f +k++ll    +  +k  ke+  ++++G+ di++GTh+ll++++kfkdlgLl++DEEqrFGVkqKe+lK +   +dvLtlsATPIPRtL+mslsgird S+i  PP  R+  ktfv+++++ +vk+ai +El+RgGqvfyv++ri+ +++++e++re  P++++  aHg+m  +  e+ +++F+++++d+L++Tt+iE+G+dip++NTiii++ ++fG++ LyQLrGRvGRs++++yay+l  +++++te++  RL+ai e +elG+Gf +A +DleiRGaG lLG+eQsG+ + vGfdlY+++l++ i +l+                     +++k+ e+ +i + ++af ipedyi+d++++  +   ++ a+s++ + ++ + ++ ++G+lp  +++ l+ ++l+  ++ lgi 
  MMETSP1061-20121228|17803_1 286 EVFPGDFVVHRKYGIGRFEKTTTTPRLKLTRDEVKARDARRKEiiteklrsakggvpqemiqqiqaqfgtekdtdpisnpqvtvleityadgiVHVPVDRAYRLSRYRAGDAaVKPRLSKVRGDQWRNARKKVEASTLELAQDVLALYATRETLQRQPFNPDNEHkVKEFEKTFKFEPTKDQTKCFEDVENDMVwRSRPMDRLICGDVGFGKTEVAIRALYRTVANGRQAAMLAPTGVLASQHYKNILNRVgeeSGFNLKVGLLRGGLSpkSKPGKEMRGKIENGDYDIIVGTHALLSNSLKFKDLGLLVVDEEQRFGVKQKERLKLICDGIDVLTLSATPIPRTLQMSLSGIRDTSTIRSPPPMRKSTKTFVQSFNKDIVKHAIAQELERGGQVFYVVPRIALLDEAEETIRECFPDIKVIQAHGRMGRNVAEDNVSRFAEGDIDILLATTVIENGVDIPSVNTIIIQDSQNFGMSTLYQLRGRVGRSDQQGYAYFLH-NEDAITEQSVMRLQAIGELNELGSGFDVANRDLEIRGAGSLLGTEQSGAAARVGFDLYMRMLKKSIRQLRgldvphvprtnvllprgqgsVEIRKKDESGKI-IAVHAFqIPEDYIPDESERRLAETAVRLADSSNTLVELTNKWKGDYGPLPAILQRKLKTMHLHASTRRLGID 958
                  6779*******************************999999889***************************************************************977651689*********************************************99852799************************74789****************************************************955568********976541155679*****************************************************************************************************************************************************************************************************************************96.5689*********************************************************************************99754344444445566.5567766************9999***************************************9999999986 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.3   0.0  1.4e-112  7.3e-110     209     608 ..     435     834 ..     394     845 .. 0.89

  Alignments for each domain:
  == domain 1    score: 366.3 bits;  conditional E-value: 1.4e-112
    TIGR00643 209 ekkqqsaksvavse.ellekllasLPfelTeaQkravkeileD.lksdvpmnRLlqGdVGsGKTvVavlallaviesGyqvalmaPTeiLAeQhyeklrellep...lgievalLtgslkkkkk..kelleeiasGeielvvGThallqekvefkeLalviiDEQhrFGveQRkkLrekgkekiaphvLvmsATPIPRtlAltvygdldvsiidelPlGrkpittklikekekdkvyevveeeikkgrqvyvvyplieeseklelkaaealleelkkafpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLva..epkseeakkRLrvlaetld...GFviaeeDLklRgpGdllgkkQsGla 608
                  +++  + +++++++ ++++++ ++  fe+T++Q++  +++++D + +++pm RL+ GdVG GKT Va+ al++++++G q+a++aPT +LA+Qhy+++ + + +   ++++v+lL g l  k+k  ke++ +i++G+ +++vGThall+++ +fk+L+l ++DE +rFGv+Q+++L+   +     +vL++sATPIPRtl ++++g  d+s+i++ P+ rk  +t +  + +kd+v + + +e+++g qv++v+p+i   ++ e        e++++ fp+++v   hgr+  +  e+ +++F e+++diL+aTtviE Gvd+P ++ ++i+d++ fG+s+L QLRGRvgR+++++y+  ++  +  +e++  RL+++ e ++   GF +a+ DL++Rg G llg++QsG+a
  MMETSP1061-20121228|17803_1 435 TRETLQRQPFNPDNeHKVKEFEKTFKFEPTKDQTKCFEDVENDmVWRSRPMDRLICGDVGFGKTEVAIRALYRTVANGRQAAMLAPTGVLASQHYKNILNRVGEesgFNLKVGLLRGGLSPKSKpgKEMRGKIENGDYDIIVGTHALLSNSLKFKDLGLLVVDEEQRFGVKQKERLKLICD---GIDVLTLSATPIPRTLQMSLSGIRDTSTIRSPPPMRKSTKTFVQ-SFNKDIVKHAIAQELERGGQVFYVVPRIALLDEAE--------ETIRECFPDIKVIQAHGRMGRNVAEDNVSRFAEGDIDILLATTVIENGVDIPSVNTIIIQDSQNFGMSTLYQLRGRVGRSDQQGYAYFLHneDAITEQSVMRLQAIGELNElgsGFDVANRDLEIRGAGSLLGTEQSGAA 834
                  23344568899999677788888********************44699**************************************************99987634479********9987776559**************************************************9998...46***********************************9998765.55678***********************9777666........78999********************************************************************************988886677889999****9987664444************************64 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.0   5.7e-15   2.9e-12       1     112 [.     488     609 ..     488     628 .. 0.86
   2 !    4.7   0.0    0.0038       1.9      16      49 ..     668     701 ..     660     703 .. 0.87
   3 !   20.9   0.1   4.6e-08   2.4e-05     277     375 ..     693     778 ..     690     782 .. 0.82
   4 ?   -3.6   0.0       1.2   6.3e+02     267     299 ..    1077    1109 ..    1075    1119 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 5.7e-15
    TIGR00595   1 lleGvtGSGKtEvylkviekvlakgksvlvLvPEiaLtaqllkrlker......fgsevavlhsklsasek..kqawrkvklgeakvviGarSalf..lPlknLgliivDEEHdssyKqeel 112
                  l+ G  G GKtEv ++++ ++ a+g+++ +L P   L+ q  k++ +r      f+ +v++l  +ls   k  k++  k+++g   +++G+++ l   l +k+Lgl++vDEE  +  Kq+e 
  MMETSP1061-20121228|17803_1 488 LICGDVGFGKTEVAIRALYRTVANGRQAAMLAPTGVLASQHYKNILNRvgeesgFNLKVGLLRGGLSPKSKpgKEMRGKIENGDYDIIVGTHALLSnsLKFKDLGLLVVDEEQRFGVKQKER 609
                  67899***********************************9998877633333366778999999*9888744566779*************9986336789*****************986 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0038
    TIGR00595  16 kviekvlakgksvlvLvPEiaLtaqllkrlkerf 49 
                  ++i++ l++g +v ++vP iaL     + ++e f
  MMETSP1061-20121228|17803_1 668 HAIAQELERGGQVFYVVPRIALLDEAEETIRECF 701
                  79********************999888888776 PP

  == domain 3    score: 20.9 bits;  conditional E-value: 4.6e-08
    TIGR00595 277 veeelkkllpkariarldsDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpdfRaaErtfqlltqvaGRagRaekpg 375
                   ee++++ +p+++++++   +   ++ +e+ +++fa+g+idil+ t +i  G+d p+v+++ + +                +++l+q+ GR gR++++g
  MMETSP1061-20121228|17803_1 693 AEETIRECFPDIKVIQAHGRM--GRNVAEDNVSRFAEGDIDILLATTVIENGVDIPSVNTIIIQDS-----------QNFGMSTLYQLRGRVGRSDQQG 778
                  58999******9998876654..455679*****************************98766543...........3346788899999999988887 PP

  == domain 4    score: -3.6 bits;  conditional E-value: 1.2
    TIGR00595  267 lkykglGtekveeelkkllpkariarldsDttr 299 
                   ++ +g+G + v + lk llp ar+   ++++ +
  MMETSP1061-20121228|17803_1 1077 MRNFGTGKQAVDRLLKVLLPIARTVYQQQEKEK 1109
                   678999**************9998766655444 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   2.6e-11   1.3e-08     104     207 ..     493     597 ..     482     603 .. 0.84
   2 !    9.3   0.0   7.5e-05     0.038     122     187 ..     676     737 ..     665     749 .. 0.90
   3 ?   -3.5   0.0      0.55   2.8e+02     393     444 ..     854     905 ..     852     942 .. 0.69

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 2.6e-11
    TIGR01054 104 tGvGkttfglvmslflakk.gkrvyiilPttlLvkqvaekl.sslaekeglnirvvayhsklstkek..kevkeriengdfdilittsaflsknleklkykFdlvfvD 207
                   G Gkt + +  +l+     g+++ ++ Pt +L++q ++++ +++ e++g+n +v+ + + ls k+k  ke++ +iengd+di+++t a ls  l+    +  l++vD
  MMETSP1061-20121228|17803_1 493 VGFGKTEVAIR-ALYRTVAnGRQAAMLAPTGVLASQHYKNIlNRVGEESGFNLKVGLLRGGLSPKSKpgKEMRGKIENGDYDIIVGTHALLSNSLKFK--DLGLLVVD 597
                  69999998875.5666555499999*************98637899*****************9998779*******************998765432..46666666 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 7.5e-05
    TIGR01054 122 kgkrvyiilPttlLvkqvaeklsslaekeglnirvvayhsklstkekkevkeriengdfdilitts 187
                  +g +v++++P   L  ++ e++++   +    i+v   h+++ ++  ++   r+++gd dil++t+
  MMETSP1061-20121228|17803_1 676 RGGQVFYVVPRIALLDEAEETIRECFPD----IKVIQAHGRMGRNVAEDNVSRFAEGDIDILLATT 737
                  5899*********************994....556678**************************98 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 0.55
    TIGR01054 393 RGlDlPervryavFlgvPkfkvrlkvalsspsrllallsllaeekieslkek 444
                  RGlD+P++ r  v l   +  v+++ +++s + +      + e++i  ++e+
  MMETSP1061-20121228|17803_1 854 RGLDVPHVPRTNVLLPRGQGSVEIRKKDESGKIIAVHAFQIPEDYIPDESER 905
                  9***********9997777777776555555544444444457777655554 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   7.2e-08   3.7e-05     229     334 ..     681     790 ..     650     803 .. 0.76

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 7.2e-08
    TIGR01389 229 iYassRkk.veelaeaLes..kgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPk.nlesyyqeaGRaGRDGlkaeaillyseaDla 334
                   Y   R    +e +e++++    i++++ h+ + ++v +++  +F e d  +++at     G+d + v  +i  d  +  + + yq  GR GR  ++  a +l++e+ ++
  MMETSP1061-20121228|17803_1 681 FYVVPRIAlLDEAEETIREcfPDIKVIQAHGRMGRNVAEDNVSRFAEGDIDILLATTVIENGVDIPSVNTIIIQDSQNfGMSTLYQLRGRVGRSDQQGYAYFLHNEDAIT 790
                  455555431344444444322579999******************************************99988865536999***********9999999888776554 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.3       1.1   5.7e+02     377     442 ..     126     187 ..     111     189 .. 0.64
   2 !   19.6   0.0   1.4e-07   7.2e-05     250     339 ..     703     792 ..     629     805 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 1.1
    TIGR00614 377 syfeekqlkkasskkgteksCdnCkkrldyktkdvedkvkdlikqaqkllsavdklnekfgigllv 442
                  +  ee   +k++ ++ + k+ +     +   ++d+e  ++dl +++ k  + + +l +k g+++ v
  MMETSP1061-20121228|17803_1 126 KALEE--QDKEFKEERRRKVWGEFADAKT--AEDIERVKQDLKEKIDKENEYKATLAKKQGVDMEV 187
                  44444..3455555555555555544444..67888888888888888888888888888887766 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 1.4e-07
    TIGR00614 250 glaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihys.lpksiesYYqesGRaGRDglksecvlfyapaDvallr 339
                  +++    h  +  +  ++   +f + +i++++at     G++ p v  +i  +     + + Yq  GR GR + +  +  +++   ++  +
  MMETSP1061-20121228|17803_1 703 DIKVIQAHGRMGRNVAEDNVSRFAEGDIDILLATTVIENGVDIPSVNTIIIQDsQNFGMSTLYQLRGRVGRSDQQGYAYFLHNEDAITE-Q 792
                  5777788999*999999999**************************998766515568*****************99988876655444.3 PP

>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.06        31     130     168 ..     587     626 ..     575     631 .. 0.75
   2 !   15.3   0.0   3.2e-06    0.0017     332     383 ..     722     774 ..     710     782 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.06
    TIGR04095 130 llkkkllliaDeahnlGakrlke.alpdsiklRLgLsatP 168
                  ++k+  ll++De   +G k+ +  +l  +    L+LsatP
  MMETSP1061-20121228|17803_1 587 KFKDLGLLVVDEEQRFGVKQKERlKLICDGIDVLTLSATP 626
                  567778***********98765424544444569*****9 PP

  == domain 2    score: 15.3 bits;  conditional E-value: 3.2e-06
    TIGR04095 332 lkqfesgelqalvairCLDeGvDvPairtayiLasssn.PrqFiqRRGRvLRk 383
                  + +f++g+++ l+a   +++GvD+P+++t +i  s +       q RGRv R 
  MMETSP1061-20121228|17803_1 722 VSRFAEGDIDILLATTVIENGVDIPSVNTIIIQDSQNFgMSTLYQLRGRVGRS 774
                  679************************98766655543246788******986 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   3.5e-06    0.0018     324     389 ..     724     790 ..     708     801 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 3.5e-06
    TIGR03817 324 alkdGellgvaatnalelGvdisGldavviaGfP.GtvaslwqqaGraGrrgqdalvvlvarddPld 389
                  ++++G++  + at  +e Gvdi  +++++i       +++l+q  Gr Gr+ q+  + ++ ++d + 
  MMETSP1061-20121228|17803_1 724 RFAEGDIDILLATTVIENGVDIPSVNTIIIQDSQnFGMSTLYQLRGRVGRSDQQGYAYFLHNEDAIT 790
                  57899************************98755146899*****************9999999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.70u 0.15s 00:00:00.85 Elapsed: 00:00:00.57
# Mc/sec: 2607.92
//
Query:       MMETSP1061-20121228|17818_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|17843_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.38
# Mc/sec: 2028.46
//
Query:       MMETSP1061-20121228|17858_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00034   18.0   3.7      0.039   11.3   0.1    2.5  3  TIGR01768 GGGP-family: geranylgeranylglyceryl phosphate synthase family protein
     0.0034   14.8   0.2      0.016   12.5   0.0    2.0  2  TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
     0.0035   13.9   0.1     0.0059   13.2   0.1    1.3  1  TIGR03966 actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
     0.0087   12.8   0.2      0.019   11.7   0.1    1.6  1  TIGR00262 trpA: tryptophan synthase, alpha subunit
  ------ inclusion threshold ------
      0.015   12.8   0.1      0.053   10.9   0.1    1.9  1  TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
      0.019   12.6   0.5       0.15    9.7   0.1    2.1  2  TIGR00734 hisAF_rel: hisA/hisF family protein


Domain annotation for each model (and alignments):
>> TIGR01768  GGGP-family: geranylgeranylglyceryl phosphate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       1.3     9e+02     195     207 ..     180     192 ..     174     223 .. 0.69
   2 !    7.4   0.0   0.00085      0.58      23      77 ..     237     289 ..     225     303 .. 0.81
   3 !   11.3   0.1   5.7e-05     0.039     183     215 ..     325     357 ..     318     367 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 1.3
    TIGR01768 195 rklaeagADvvvv 207
                  + +++ gADvv v
  MMETSP1061-20121228|17858_1 180 EAMVRLGADVVFV 192
                  4566666666654 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00085
    TIGR01768  23 vaeaGtDailvgGsqgvtlekldtvikklkryevpiilfpsnlenvsrkaDallf 77 
                  + eaG D++l+  s       ld+ ++ +  +++  i++   +++v r +Da+  
  MMETSP1061-20121228|17858_1 237 AKEAGCDGVLLIASVLG--PALDNFLDLATTIGLETIVECHTHNEVQRALDAMAT 289
                  569*****998766433..368889999999********************9865 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 5.7e-05
    TIGR01768 183 ivGGGirsvEkArklaeagADvvvvGnvieedd 215
                  + GGGi+++E+ ++ +  g D vvvG  +  + 
  MMETSP1061-20121228|17858_1 325 LAGGGIETPEQMKRHLAVGYDGVVVGKAVMGSA 357
                  68***********99999********9887664 PP

>> TIGR00343  TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.19   1.3e+02     217     231 ..     182     196 ..     132     247 .. 0.75
   2 !   12.5   0.0   2.4e-05     0.016     199     243 ..     321     365 ..     269     371 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.19
    TIGR00343 217 lmqlGadGvfvGsGi 231
                  +++lGad vfv    
  MMETSP1061-20121228|17858_1 182 MVRLGADVVFVNVDY 196
                  788888888886554 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2.4e-05
    TIGR00343 199 pvvnfaaGGvatpadaallmqlGadGvfvGsGifksenpeklaka 243
                  p++ +a GG+ tp +    + +G dGv vG  ++ s +  ++ + 
  MMETSP1061-20121228|17858_1 321 PIICLAGGGIETPEQMKRHLAVGYDGVVVGKAVMGSAKAPEFIRV 365
                  899******************************999988777665 PP

>> TIGR03966  actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   8.6e-06    0.0059     258     335 ..     277     354 ..     261     367 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 8.6e-06
    TIGR03966 258 vddarravdvGvtaisvsnhGGnnldgtpaairalpaiaeavGdqvevlldGGirrGsdvvkalalGaravliGrayl 335
                   ++ +ra+d+ +t i vsn+     +  p     l ++    G  +  l  GGi    ++ + la+G   v++G+a +
  MMETSP1061-20121228|17858_1 277 HNEVQRALDAMATNILVSNYDRVAQQMFPEQAIKLAGMFPGSGGPIICLAGGGIETPEQMKRHLAVGYDGVVVGKAVM 354
                  5789**************************9999*****************************************975 PP

>> TIGR00262  trpA: tryptophan synthase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.1   2.8e-05     0.019     201     231 ..     324     354 ..     230     360 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 2.8e-05
    TIGR00262 201 vlvGFGiskkeqvkelkelgadgvivGsAlv 231
                   l G Gi  +eq+k+  ++g dgv+vG A++
  MMETSP1061-20121228|17858_1 324 CLAGGGIETPEQMKRHLAVGYDGVVVGKAVM 354
                  35799***********************986 PP

>> TIGR00007  TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   7.8e-05     0.053     193     221 ..     325     353 ..     318     365 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.8e-05
    TIGR00007 193 iasGGvssiedvkalkklgvkgvivGkAl 221
                  +a GG+++ e +k+  ++g +gv+vGkA+
  MMETSP1061-20121228|17858_1 325 LAGGGIETPEQMKRHLAVGYDGVVVGKAV 353
                  57788888888888888888888888886 PP

>> TIGR00734  hisAF_rel: hisA/hisF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.12        84     164     213 ..     198     248 ..     143     253 .. 0.69
   2 ?    9.7   0.1   0.00021      0.15     179     216 ..     314     353 ..     266     356 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.12
    TIGR00734 164 svGtskgvnlellkkvlelserpvilGGGikgve.dlellkelGvsavLva 213
                  + G      ++ ++ v++ se   ++   i   e +l l ke G+++vL+ 
  MMETSP1061-20121228|17858_1 198 AYGGDISELKSSVNAVRKASETAAVVMKDIVVDEiQLGLAKEAGCDGVLLI 248
                  5555544445566777777777655555555444168999999**999864 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00021
    TIGR00734 179 vlelserpvi..lGGGikgvedlellkelGvsavLvatav 216
                  + + s  p+i   GGGi+  e++ +   +G ++v+v++av
  MMETSP1061-20121228|17858_1 314 MFPGSGGPIIclAGGGIETPEQMKRHLAVGYDGVVVGKAV 353
                  5555666664227**************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1812.65
//
Query:       MMETSP1061-20121228|17859_1  [L=799]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 3013.12
//
Query:       MMETSP1061-20121228|17896_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 381.30
//
Query:       MMETSP1061-20121228|17909_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   11.2   3.7      0.056   11.1   2.5    1.0  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   2.5   1.4e-05     0.056     101     225 ..      16     144 ..       6     167 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.4e-05
    TIGR03354 101 vslaagaapafdelaptpetlvtaalqqvsseaseedlddslteagegaaprpapqaasldPl...kaldqepasaadlddga....lsaelaeevaealpadlasidaestlepelaplpaaqpapapqeq 225
                  v+l+a+aa+a +e   +p+    ++l+ ++  +se+  + + + ++e+++  p p++   +P     ++++++  +   ++++    + a+++ + a+ ++a+ a++++++t++p++ p + + pa++++++
  MMETSP1061-20121228|17909_1  16 VALSASAADAAEEIERHPQAPILRILKAGKGGKSEKSGKSEKSGKSEKSTKAPTPSP---APTkkkGKVGKKSYVPPGTTAPIvvlpTMAPSDAPTAAPTTAPTAAPTMSPTMSPTMSPTAPPVPASTNSPT 144
                  778999999999999999998888888888877777766665555444444444443...333111345555555655666556777777777777776666666666666666666665444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 886.97
//
Query:       MMETSP1061-20121228|17917_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1060.46
//
Query:       MMETSP1061-20121228|17922_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1702.66
//
Query:       MMETSP1061-20121228|17939_1  [L=847]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    5.4  64.3     0.0014   15.5  26.6    3.4  3  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
        7.1    2.6  24.7         14    1.6  17.1    1.6  1  TIGR00580 mfd: transcription-repair coupling factor


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.4   8.4      0.75   1.5e+03     148     260 ..     396     512 ..     357     521 .. 0.46
   2 ?   15.5  26.6   6.8e-07    0.0014      81     284 ..     504     708 ..     498     710 .. 0.88
   3 ?    2.4   2.7    0.0064        13     183     248 ..     709     773 ..     707     786 .. 0.78

  Alignments for each domain:
  == domain 1    score: -4.4 bits;  conditional E-value: 0.75
    TIGR01843 148 leaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkf.....reevseelreaqarlaeleee 260
                   +a+ + l +el++++a+  al++++++ +eel+ ++  ++  +v+ l + ++   + ++ +++ +l+ el +  +el++l++kl+ + +        ++  e+ ++ q+++++l+ +
  MMETSP1061-20121228|17939_1 396 KDAEKEGLLEELDQARAERDALQKTVQMQAEELKKASLVAKPSAVAPLPVDDS-ADEGSADAAIHRLKVELFEKDSELAALRAKLEDVHEAEddedeNQNQNENEKQHQQEIERLTRA 512
                  44444444555555555555555555555555555555555555444443222.2233334444444444444444444444444433222100000122222222333344444333 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 6.8e-07
    TIGR01843  81 adaaelesqvl..aleaevarlraeanseeaiefpdillsae.d.avaelvkeqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelreaqarlaeleee..lskardrlqrliirsPvdGtvqsl 284
                  +++++l+  ++   le+e  r ++e++s  + +++d+ ++++ + ++++ +k   +l++++ ++lr++ +++  + +ql+a+   lq+++++l+++l  +s++ +a+ + +ek+     ++ ++  e a+l +ela++ +++++lk++l++ +++l+e  ++ ++++s+ + + q+++++l+e   +++ + r++++++++  ++ vq+l
  MMETSP1061-20121228|17939_1 504 QEIERLTRALAdkDLELESLRTSTELESLRNSSANDQFAEQQkQvQAEQEIKAMSDLHNEETAKLRDECQKILLEKNQLQAN---LQSRIEELERTL--ASQQEQAAASVQEKETSTPKATADAATETAALTEELASKDQDIASLKTQLEDCQRQLAESAEQGTRDLSALRAKLQSQIDSLSELgsRREEEHRNELQQLTAEYNAAVQTL 708
                  55555555554115788889999*************999999679***************************9998888865...688899888765..67777888999************************************************************************96225667789999************98 PP

  == domain 3    score: 2.4 bits;  conditional E-value: 0.0064
    TIGR01843 183 lrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevseelr 248
                  ++ L+++++v  +   +  +e  elq +la++++el+ +++ +d++++ ++ l++++ +  s+ l 
  MMETSP1061-20121228|17939_1 709 QDRLNDNQAVLSVLQVATPEEASELQFQLASSRSELQMARRGADKARRTAEALQAELDKCKSQ-LA 773
                  567889999999999999999999999999999999999999999999998888877654443.33 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6  17.1    0.0067        14      51     316 ..     495     759 ..     385     782 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0067
    TIGR00580  51 fdvadqrsleeleeiellpakeilleeetrarakkkaaaveeaektekealkegkkkaglekllpllfeelsslldelkdetlilldepekvekaaeelereleefleaaleakklisaerlsleveelvleakalslsevelesal.slkaseaieaaqeaeraela..eilalkeellralkagfkvvllaesesqaerlksllkesdiaakvtaesskllkeavkavlegelsegfalveaelaviteselfgervkakkkkkkkk 316
                   + +++++++e+e ++   a + l  e++r++++ ++ ++++a+++ +e++k+ +++++++++  l  ee++ l de+++  l  ++ + + ++++eeler+l+  +e+a +  + +++   +   ++  +e+ al+ +  ++ + + slk++ + +++q ae+ae+   +++al  +l +++ +  ++     +e+++++l++l +e++ a+++ +      ++av +vl+ +  e+ +  +++la  + sel  +r+ a k+++ ++
  MMETSP1061-20121228|17939_1 495 QNENEKQHQQEIERLTRALADKDLELESLRTSTELESLRNSSANDQFAEQQKQVQAEQEIKAMSDLHNEETAKLRDECQKILLEKNQLQANLQSRIEELERTLASQQEQAAASVQEKETSTPKATADAA-TETAALTEELASKDQDIaSLKTQLEDCQRQLAESAEQGtrDLSALRAKLQSQIDSLSELGSR-REEEHRNELQQLTAEYNAAVQTLQ-DRLNDNQAVLSVLQVATPEEASELQFQLA-SSRSELQMARRGADKARRTAE 759
                  4556667777777777777777666677777777777777888777779999999999999999999999********998886666666666777777776666555554444333332222222222.23445555555555444477766666666655555544004444444444444443333333.338888999999***999999555.45566777888888888888888888766.456777776665555444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (847 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       586  (0.142857); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.95u 0.18s 00:00:01.12 Elapsed: 00:00:00.77
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|17952_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   11.0   0.0      0.045   10.5   0.0    1.1  1  TIGR03266 methan_mark_1: putative methanogenesis marker protein 1


Domain annotation for each model (and alignments):
>> TIGR03266  methan_mark_1: putative methanogenesis marker protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   1.1e-05     0.045      27     113 ..      33     115 ..      14     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.1e-05
    TIGR03266  27 aditnLDrigiPvfsaiRpsaaegaisiyaGkGateiqArvsaimEavERysAevkeeekkiltareeeneldpeslilpqeyeeks 113
                  ++ + LD   iPv  a R++ ++  is+   k  +  +  +++im +v+R+ A  +++   il +r++++ + + sl l +++++++
  MMETSP1061-20121228|17952_1  33 KSANALDANAIPVDPACRKVMTKWCISL--CKFCNYDRDMIASIMSCVDRFVATPQGSR--ILWNRDDYQLVVMASLYLVTKIQQRQ 115
                  344689******************9997..689999*****************997654..55556677766667776666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1684.18
//
Query:       MMETSP1061-20121228|17971_1  [L=681]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (681 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 3099.47
//
Query:       MMETSP1061-20121228|17967_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.0   0.0      0.028   11.2   0.0    1.3  1  TIGR04093 cas1_CYANO: CRISPR-associated endonuclease Cas1, subtype CYANO


Domain annotation for each model (and alignments):
>> TIGR04093  cas1_CYANO: CRISPR-associated endonuclease Cas1, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   6.9e-06     0.028      22     140 ..     156     279 ..     149     314 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.9e-06
    TIGR04093  22 veipedgeekivsvPlekvetivvlGeitlttsalaellekkivihflsk.....lGkykGslvPeltrntllrlaqyraaeekeqrleiareivkgklknsrtlllRrsrkesedtlidsisd 140
                  +e + d ++++  vPl k+  i v+  ++l ++ +     +++++  +       + +++ +l+   +  ++l     ra+ + +++ +++r++++++++ +r+ ++R+++++s d++ +s ++
  MMETSP1061-20121228|17967_1 156 QEGSSDTDSTVLVVPLLKMAAIDVFAAVALRSNGVDFGCTRNLELSPIASafdglTMEFTRRLKRPWDPFSFLYGMPTRANRNYNKQRKLIRTFISTQISQTRARIARKQENRSRDDVGESSDQ 279
                  4445577788888999999999999999999998888888887776554311111345666665556667888888999*********************************999999888733 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.24
# Mc/sec: 3376.72
//
Query:       MMETSP1061-20121228|17992_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.3   0.0        1.1    6.1   0.0    2.3  2  TIGR02130 dapB_plant: dihydrodipicolinate reductase


Domain annotation for each model (and alignments):
>> TIGR02130  dapB_plant: dihydrodipicolinate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   0.0   0.00027       1.1      62     109 ..      62     112 ..      10     123 .. 0.79
   2 ?    2.9   0.0    0.0025        10      94     123 ..     163     192 ..     156     210 .. 0.87

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.00027
    TIGR02130  62 sevlekypel.ivvdytipsavndnaelyvkvkvpfvmgttg..gdreala 109
                  s+ l k   + ++ d t  sav+dn e + k+++  v    g    re+ +
  MMETSP1061-20121228|17992_1  62 SSYLLKQDGIpVIADVTASSAVQDNYEGWLKQGISVVAANKGifAGRESKY 112
                  455555554425679********************9988776333455544 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0025
    TIGR02130  94 vpfvmgttggdrealaklveeakiyaviap 123
                  + fv+g   g +++l + v+eak      p
  MMETSP1061-20121228|17992_1 163 LAFVLGQVAGGKTSLSQAVQEAKELGYTEP 192
                  68********************98766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.37
# Mc/sec: 1216.44
//
Query:       MMETSP1061-20121228|18009_1  [L=601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (601 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2644.18
//
Query:       MMETSP1061-20121228|18033_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.8e-170  562.4   0.0   1.2e-169  562.2   0.0    1.0  1  TIGR01365 serC_2: phosphoserine aminotransferase
    1.8e-22   77.9   0.0      2e-22   77.7   0.0    1.0  1  TIGR01366 serC_3: putative phosphoserine aminotransferase
    3.9e-13   46.8   0.0      5e-13   46.5   0.0    1.1  1  TIGR01364 serC_1: phosphoserine transaminase


Domain annotation for each model (and alignments):
>> TIGR01365  serC_2: phosphoserine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  562.2   0.0  8.6e-173  1.2e-169       1     372 [.      41     407 ..      41     409 .. 0.97

  Alignments for each domain:
  == domain 1    score: 562.2 bits;  conditional E-value: 8.6e-173
    TIGR01365   1 rpanpefssgpcakrpgysveelknaalgrshrsklgkeklkeaiektrevlevpadyligivaasdtgavemalwsllgargvdllafesfgkgwvtdvtkqlklkd...vrvleaeygklpdlkkvdfkkdvvftwngttsgvrvpng.dfipadreglticdatsaafaqdldyekldvvtfswqkvlggegahgvlilspravarlesytpa.wplpkifrltkggklskdifegetintpsmlavedaldalkwaesigglkalvaraddnlavleafvaksswvdflaatkeirsntsvclkvvdpdvaaldedaqadfakelvsalekegvaydigsyrdapaglriwcgatveksdleallewldwafa 372
                  +p+npefssgpc krpgy v +l   + grshrsk+gke+l  ai+kt+e+l++p+dyl+giv+asdtga+ema+w +lg+r+vd++ +esfgkgw  d +  l+l+d   v+ + a+yg lpd+++ ++++d+ ft+ngttsgvrvp g dfi++dr g+t+cdatsa fa+++++ekld+ t+swqkvlggegahg+lilsp+av+rlesytp   plpkifr+ k gk+  +if+g+tintpsmlaved++dal+w++siggl  lva++++nlav+e+fv+ ++wvdfla+ +++rs tsvcl +     +       ad +k++vs+l+ e+vaydig+yrdap+ +riwcgatvek+dleal++w++wa++
  MMETSP1061-20121228|18033_1  41 KPTNPEFSSGPCKKRPGYDVSKLDSRTAGRSHRSKIGKERLGYAIDKTKEILGIPEDYLVGIVPASDTGAYEMAMWNVLGQRNVDIFHWESFGKGWFGDAVSHLNLRDsveVNEYTADYGLLPDMSQANPDHDICFTFNGTTSGVRVPAGcDFISDDRTGITMCDATSACFAMNMPWEKLDITTYSWQKVLGGEGAHGMLILSPKAVERLESYTPEgRPLPKIFRMVKKGKIDGGIFKGSTINTPSMLAVEDYIDALEWSDSIGGLPGLVAKSESNLAVMEKFVEENDWVDFLAKDPATRSCTSVCLTL-----D-----LTADEIKKFVSVLDSEDVAYDIGGYRDAPPSIRIWCGATVEKEDLEALVPWMKWAYE 407
                  599*******************************************************************************************************9865567789********************************866****************************************************************637*****************************************************************************************99.....2.....3355699************************************************96 PP

>> TIGR01366  serC_3: putative phosphoserine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   1.5e-25     2e-22       1     357 [.      41     405 ..      41     409 .. 0.84

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 1.5e-25
    TIGR01366   1 kpadgrfgagpskvrleqlqalvataasllgtshrqaavknlvgkvreglaelfslpdgyevilgnggatafwdaatfgliekkslhlsfgefssk..fakaaklapfldepei..vtadpgsapea.qaeegvdvialahnetstgvavavrrpegsde..alvvidatsgagglpvdiketdvyyfapqksfasdgglwlavlspaaleriekiaasgrfvpeflsl..ptavdns.lknqtyntpavatlllldeqvdwlngnggldfavartkdsssrlyswaeereyatpfvadaakrs..qvvgtidfsddidaavvakilrangi.vdtepyrklgrnqlrvamfpaidpadvealteavdfv 357
                  kp++  f +gp k r+      ++  +   g shr    k+ +g   +  +e++ +p+ y v +     t  +++a + ++ ++   + + e   k  f +a++     d  e+   tad g  p+  qa++  d i+++ n t++gv v+      sd+   + + dats +  + +  ++ d+  ++ qk +  +g   + +lsp a+er+e  +  gr +p+++ +  +  +d    k  t ntp++ ++    + ++w  + ggl + va++++    + ++ ee++       d+a rs   v  t+d++ d     v  +l ++ +  d   yr      +r+    +++ +d+eal   + + 
  MMETSP1061-20121228|18033_1  41 KPTNPEFSSGPCKKRPGYDV--SKLDSRTAGRSHRSKIGKERLGYAIDKTKEILGIPEDYLVGIVPASDTGAYEMAMWNVLGQRNVDIFHWESFGKgwFGDAVSHLNLRDSVEVneYTADYGLLPDMsQANPDHD-ICFTFNGTTSGVRVPAGCDFISDDrtGITMCDATSACFAMNMPWEKLDITTYSWQKVLGGEGAHGMLILSPKAVERLESYTPEGRPLPKIFRMvkKGKIDGGiFKGSTINTPSMLAVEDYIDALEWSDSIGGLPGLVAKSESNLAVMEKFVEENDWVDFLAKDPATRSctSVCLTLDLTADEIKKFV-SVLDSEDVaYDIGGYRDAP-PSIRIWCGATVEKEDLEALVPWMKWA 405
                  688999*********97533..34444556********************************999999*************9999988666644443499999999988877663379*******9615566555.78**************99999998767899***********************************************************99873245788762699*********999999********************9999*************99*******94347788998755434444.4555554427889998864.67899999999999999988777665 PP

>> TIGR01364  serC_1: phosphoserine transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.5   0.0   3.6e-16     5e-13      37     351 ..      71     402 ..      58     407 .. 0.81

  Alignments for each domain:
  == domain 1    score: 46.5 bits;  conditional E-value: 3.6e-16
    TIGR01364  37 sHRskefekvveeaesdlreLlnipdnyevlflqGGattqfaavplnllkekkvadyivtGawskkalkeakkltk.evkvvaseeekkyskipdeeelelkedaayvylcanetieGvefkelpevkk....aplvaDlssdilsrkidvskygliyaGaqKniGpaGvt.vvivrkdllerakk......elpsvldYkilae......ndslyntpptfaiyvlglvlkwlkekGGvkklekknqeKakllYeaidesegfyknkvekkaRslmnvvFtlkke.elekeFlkeaeekgl.vslkGhrsv.GGiRasiYnalpleevqaLvdfm 351
                  sHRsk  ++ +  a ++ +e+l ip++y v  +    t+ + +   n+l ++ ++d     +++k  + +a    + + +v ++e + +y  +pd ++ + ++d   + ++ n t +Gv +    ++ +     + ++D  s  ++ ++  +k ++     qK +G  G   ++i+  + +er ++       lp++++   + +      + s +ntp++ a+      l+w  + GG+  l +k+++  +++ + ++e++ +   + ++++Rs   v+ tl+ + +  k+F++   ++++   + G+r     iR     ++  e+ +aLv +m
  MMETSP1061-20121228|18033_1  71 SHRSKIGKERLGYAIDKTKEILGIPEDYLVGIVPASDTGAYEMAMWNVLGQR-NVDIFHWESFGKGWFGDAVSHLNlRDSVEVNEYTADYGLLPDMSQANPDHD---ICFTFNGTTSGVRVPAGCDFISddrtGITMCDATSACFAMNMPWEKLDITTYSWQKVLGGEGAHgMLILSPKAVERLESytpegrPLPKIFRMVKKGKidggifKGSTINTPSMLAVEDYIDALEWSDSIGGLPGLVAKSESNLAVMEKFVEENDWVDFLAKDPATRSCTSVCLTLDLTaDEIKKFVSVLDSEDVaYDIGGYRDApPSIRIWCGATVEKEDLEALVPWM 402
                  9************************************************988.778888888888888888777664445555566789*****9998888888...77899********9976665554555899********************************9962566677888888888889997888887655433222333789***********************************************9999999**************998745557898876666552467777754134555555555555566666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 1762.69
//
Query:       MMETSP1061-20121228|18041_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1380.39
//
Query:       MMETSP1061-20121228|18052_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         7  (0.00170648); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.13s 00:00:00.20 Elapsed: 00:00:00.23
# Mc/sec: 189.38
//
Query:       MMETSP1061-20121228|18050_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-11   40.2   0.0    4.5e-11   40.2   0.0    1.4  2  TIGR01622 SF-CC1: splicing factor, CC1-like family
    9.3e-11   38.7   0.0    1.2e-10   38.3   0.0    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
      3e-09   34.4   0.0    3.9e-09   34.0   0.0    1.1  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    2.6e-08   31.6   0.0    2.6e-08   31.6   0.0    1.1  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    1.4e-07   28.5   0.0    1.7e-07   28.2   0.0    1.0  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    2.1e-06   25.4   0.0    2.7e-06   25.1   0.0    1.1  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
    1.1e-05   22.3   0.0    1.2e-05   22.1   0.0    1.1  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
     0.0013   15.6   0.0     0.0018   15.2   0.0    1.2  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   1.0       1.9   9.9e+02      38      50 ..       8      17 ..       2      20 .. 0.42
   2 !   40.2   0.0   8.8e-14   4.5e-11     222     294 ..      45     117 ..      28     120 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 1.9
    TIGR01622 38 ersrskerdrdfd 50
                 +rs    rdr++d
  MMETSP1061-20121228|18050_1  8 RRST---RDRQHD 17
                 2222...344443 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 8.8e-14
    TIGR01622 222 LYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvg 294
                   +v ++h +  E+++r+ F  +G+i+++ l+ D ++G +kGy  ++F + +ea++A+++l G  l G +i v 
  MMETSP1061-20121228|18050_1  45 TFVTGIHEEAHEDDIREAFSDYGRIKSIVLNADRKSGLAKGYALVEFLERNEAQDAINALHGKPLLGQKIGVH 117
                  58999**************************************************************999885 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   2.4e-13   1.2e-10     300     373 ..      46     119 ..      31     122 .] 0.94

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 2.4e-13
    TIGR01642 300 yignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                  ++ ++  + ++d ++e   ++G +k+  l  d++ Gl KGya +e+ + + ++ Ai+aL G+ l ++k+ v+ A
  MMETSP1061-20121228|18050_1  46 FVTGIHEEAHEDDIREAFSDYGRIKSIVLNADRKSGLAKGYALVEFLERNEAQDAINALHGKPLLGQKIGVHWA 119
                  899999999******************************************************99999988877 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.0   0.0   7.5e-12   3.9e-09     183     244 ..      47     109 ..      44     118 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.0 bits;  conditional E-value: 7.5e-12
    TIGR01628 183 vKnlddsvtedklrelFakfGeitSaivkkde.knrkrgfafvnyekaedAkkAveelngkki 244
                  v  ++++ +ed +re F+++G+i S++   d+ ++ ++g+a v++ + ++A+ A+++l+gk +
  MMETSP1061-20121228|18050_1  47 VTGIHEEAHEDDIREAFSDYGRIKSIVLNADRkSGLAKGYALVEFLERNEAQDAINALHGKPL 109
                  566778889999999999999999999988851578899999999999999999999999854 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0   5.1e-11   2.6e-08      15      77 ..      54     116 ..       9     121 .. 0.61

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 5.1e-11
    TIGR01661  15 mtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikv 77 
                    +++ir  f+  G i s+ l  d+  G + Gy +v+++++++a+ a+n+l G  l  + i v
  MMETSP1061-20121228|18050_1  54 AHEDDIREAFSDYGRIKSIVLNADRKSGLAKGYALVEFLERNEAQDAINALHGKPLLGQKIGV 116
                  345555555555555555555555555555555555555555555555555555555555544 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   3.3e-10   1.7e-07     110     176 ..      47     114 ..      38     119 .. 0.56

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 3.3e-10
    TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve..evPeaallaleqmngallGGrnl 176
                  v  i  e +ed +r+af+ +G iksi +  d   +  kg+a+ve  e  + a+ a + + g+ l G+ +
  MMETSP1061-20121228|18050_1  47 VTGIHEEAHEDDIREAFSDYGRIKSIVLNADRKSGLAKGYALVEflE-RNEAQDAINALHGKPLLGQKI 114
                  44455566666666666666666666666666666666666666322.233555555555555545444 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   5.2e-09   2.7e-06     197     256 ..      46     105 ..      36     111 .. 0.92

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 5.2e-09
    TIGR01659 197 yvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisaln 256
                  +vt +     +d++   f  yg+i    +  d+++g  +g a+v f  r+eaq+ai al 
  MMETSP1061-20121228|18050_1  46 FVTGIHEEAHEDDIREAFSDYGRIKSIVLNADRKSGLAKGYALVEFLERNEAQDAINALH 105
                  7899999999999***********9999999***************************96 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   2.4e-08   1.2e-05      58     120 ..      42     105 ..      19     119 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 2.4e-08
    TIGR01648  58 GcevfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkeln 120
                  G   fv  i  + +ed++   f   G+i  + l  d  +G  +Gya+v f +++ea++a+  l+
  MMETSP1061-20121228|18050_1  42 GWVTFVTGIHEEAHEDDIREAFSDYGRIKSIVLNADrKSGLAKGYALVEFLERNEAQDAINALH 105
                  55579999999*************************999*********************9886 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.5e-06    0.0018     292     368 ..      36     116 ..       2     119 .. 0.69

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.5e-06
    TIGR01649 292 paasglgsVllvsnLeeekvtpdalFnlfgvYGdvervkilknk.....ketalvemadpqqaqlalthLdkvklfgkklrv 368
                  p  s  g V +v +++ee    d +   f+ YG ++ + +   +     k+ alve+ + ++aq a++ L ++ l g+k+ v
  MMETSP1061-20121228|18050_1  36 PLRSVEGWVTFVTGIHEEA-HEDDIREAFSDYGRIKSIVLNADRksglaKGYALVEFLERNEAQDAINALHGKPLLGQKIGV 116
                  3334456789999999876.56788999999999999988776522223578999999999999999999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 644.11
//
Query:       MMETSP1061-20121228|18080_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 2303.81
//
Query:       MMETSP1061-20121228|18086_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.09s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 711.27
//
Query:       MMETSP1061-20121228|18082_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2749.01
//
Query:       MMETSP1061-20121228|18096_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   10.4   5.4      0.049   10.2   3.7    1.0  1  TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family


Domain annotation for each model (and alignments):
>> TIGR01845  outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   3.7   1.2e-05     0.049      70     119 ..      10      59 ..       3      70 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.2e-05
    TIGR01845  70 npdlqvAearlraaranlraaradlfPslslsasatrsklsesasgttss 119
                     l +Aea l a+ a+l+aa+a   P   ++a  t   ++++ ++tt++
  MMETSP1061-20121228|18096_1  10 TATLTAAEATLTASEATLTAAEATTTPLTPAEATTTTTLTPAEQATTTQK 59 
                  56799*****************************9999999666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 490.25
//
Query:       MMETSP1061-20121228|18114_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.039   11.1   0.0      0.056   10.6   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.4e-05     0.056     135     175 ..     140     180 ..     132     182 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.4e-05
    TIGR03516 135 mkegeevtfllPsykayGyyGdedkigsnlpikstvtllni 175
                  mk g +  +++P+  ayG  G  d i +n+ ++ +v +ln 
  MMETSP1061-20121228|18114_1 140 MKIGGDRKLIIPAELAYGERGAGDVIPPNTVLEFQVAVLNA 180
                  788888899***************************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1268.24
//
Query:       MMETSP1061-20121228|18115_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1265.90
//
Query:       MMETSP1061-20121228|18132_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   13.4   0.0     0.0056   12.9   0.0    1.1  1  TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific
  ------ inclusion threshold ------
       0.01   13.4   0.1       0.01   13.4   0.0    1.9  2  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain
      0.052   11.3   1.3        5.2    4.9   0.0    3.1  3  TIGR02443 TIGR02443: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR03396  PC_PLC: phospholipase C, phosphocholine-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.1e-06    0.0056      60      91 ..     289     320 ..     284     327 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.1e-06
    TIGR03396  60 yfGtlkGvRGfgDrraiklkdgksvwlqknkk 91 
                  yfG++ Gv GfgD   +k ++ ks+++ ++k+
  MMETSP1061-20121228|18132_1 289 YFGNILGVEGFGDEGSVKCPNCKSIFTVQRKT 320
                  9*************************866655 PP

>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   1.6       1.6   2.1e+03       5       8 ..     279     282 ..     278     283 .. 0.80
   2 ?   13.4   0.0   7.5e-06      0.01       3      19 ..     305     321 ..     300     324 .. 0.67

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.6
    TIGR02098   5 CPnC 8  
                  CP+C
  MMETSP1061-20121228|18132_1 279 CPSC 282
                  9999 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 7.5e-06
    TIGR02098   3 iqCPnCktsyrVddsql 19 
                  ++CPnCk+ + V+   l
  MMETSP1061-20121228|18132_1 305 VKCPNCKSIFTVQRKTL 321
                  56777777777766655 PP

>> TIGR02443  TIGR02443: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.024        33      19      35 ..      68      84 ..      63     109 .. 0.81
   2 ?    4.9   0.0    0.0038       5.2       5      21 ..     272     288 ..     269     292 .. 0.85
   3 ?    1.0   0.1     0.063        86      11      17 ..     306     312 ..     303     317 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.024
    TIGR02443 19 DtlalwkEndielvECv 35
                 D+   + E di+l EC+
  MMETSP1061-20121228|18132_1 68 DKTGRFFETDIDLGECI 84
                 6777799*********8 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0038
    TIGR02443   5 RFiAGAkCPaCseqDtl 21 
                  +F+A   CP C+ +  l
  MMETSP1061-20121228|18132_1 272 KFVAYGPCPSCEYENRL 288
                  79*********988776 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.063
    TIGR02443  11 kCPaCse 17 
                  kCP+C++
  MMETSP1061-20121228|18132_1 306 KCPNCKS 312
                  8****97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      144  (0.0351048); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1603.42
//
Query:       MMETSP1061-20121228|18127_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 2237.22
//
Query:       MMETSP1061-20121228|18142_1  [L=439]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-60  201.9   0.5    4.7e-52  174.2   0.1    2.2  2  TIGR02245 HAD_IIID1: HAD hydrolase, family IIID
    5.1e-11   40.5   0.0    2.4e-06   25.3   0.0    2.3  2  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain
    7.6e-06   24.0   0.0    1.8e-05   22.8   0.0    1.6  1  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain


Domain annotation for each model (and alignments):
>> TIGR02245  HAD_IIID1: HAD hydrolase, family IIID
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.1e-09   1.4e-06       2      37 ..     186     221 ..     185     233 .. 0.81
   2 !  174.2   0.1   3.4e-55   4.7e-52      37     193 ..     252     412 ..     249     414 .. 0.94

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.1e-09
    TIGR02245   2 lkrrveeykikllnppregkkllvldidytlldhrs 37 
                  lk+  e+  ++++ +pregk l+vld+d+tlld+  
  MMETSP1061-20121228|18142_1 186 LKKFTESTAVNIIHQPREGKPLMVLDLDHTLLDFSR 221
                  566677788************************953 PP

  == domain 2    score: 174.2 bits;  conditional E-value: 3.4e-55
    TIGR02245  37 saaedvvelmrpylhefltaayeeydiviwsatsmkwielklkelGvltnpnykitflldslamitvqterrg....vvdvkplgviwaklkefyskkntimfddlrrnfvmnpknGlkikpfkkahanrdtdkellkltkylkkiae.ledlssldhkewe 193
                  s+ e+ ++++rp++++fl++aye yd+v+ws+ts++w+e+kl elG+l+np+y+ +f+ld++ m+ ++++ r+    ++ vkpl++iw+k+++ +  +nt+++ddl+rnf++np nGl++  f +++  +  d ell l++yl+++a  +ed+++++ k+w+
  MMETSP1061-20121228|18142_1 252 STRETIEKMKRPFMDNFLAKAYESYDLVVWSQTSWRWLETKLIELGMLANPRYRFCFVLDKTSMFAIKSTARSgrqvKHYVKPLQIIWNKFPNAWGPHNTVHLDDLSRNFALNPGNGLTVTAFYRKKQGK-RDVELLGLARYLERLASeVEDFTTIQLKHWQ 412
                  788999**************************************************************99888888899*******************************************98887654.699**********998659***********7 PP

>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.7e-09   2.4e-06       3      66 ..     207     283 ..     205     296 .. 0.85
   2 !   12.9   0.0   1.1e-05     0.015     102     163 ..     331     402 ..     312     406 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.7e-09
    TIGR02251   3 tlvLDLDeTLvhsslkkakaieadlklevliek.............kiilvyVlkRPyvdeFlerlsklyelvvfTa 66 
                   +vLDLD TL+  s k ++++++  ++   +++             +  ++  +kRP++d+Fl + ++ y+lvv+  
  MMETSP1061-20121228|18142_1 207 LMVLDLDHTLLDFSRKSIEQASTAERIAEATNGnsggggvgassssTRETIEKMKRPFMDNFLAKAYESYDLVVWSQ 283
                  68*********998888886666666666666679999****99998899999*********************964 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 1.1e-05
    TIGR02251 102 yvKdlslvkkdl......skvviiDnsplsyslqpeNaipiksfis...denDeeLlklipflea.lrkedd 163
                  yvK l+++ + +       ++v +D+ + +++l+p N++ + +f      ++D eLl l ++le  +++ +d
  MMETSP1061-20121228|18142_1 331 YVKPLQIIWNKFpnawgpHNTVHLDDLSRNFALNPGNGLTVTAFYRkkqGKRDVELLGLARYLERlASEVED 402
                  66666666555422222247899*********************87333678************95555565 PP

>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.3e-08   1.8e-05       6      82 ..     205     283 ..     201     295 .. 0.71

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.3e-08
    TIGR02250   6 kLvLvlDlDqtlihttkeselseeekkkkeekesek.lkdlkkfkleekleylvk.lRPfvkeflkkvsklyelhvytm 82 
                  k  +vlDlD+tl++ +++s  + +++ ++ e+++ +   +    + +++ e++ k  RPf+++fl+k+ + y+l v+  
  MMETSP1061-20121228|18142_1 205 KPLMVLDLDHTLLDFSRKSIEQASTAERIAEATNGNsGGGGVGASSSSTRETIEKmKRPFMDNFLAKAYESYDLVVWSQ 283
                  5678**********98888777666656666655552333333333334455555269****************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (439 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 2519.27
//
Query:       MMETSP1061-20121228|18150_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1554.54
//
Query:       MMETSP1061-20121228|18176_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 993.06
//
Query:       MMETSP1061-20121228|18191_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 436.14
//
Query:       MMETSP1061-20121228|18197_1  [L=957]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.47
# Mc/sec: 2687.52
//
Query:       MMETSP1061-20121228|18225_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1001.92
//
Query:       MMETSP1061-20121228|18254_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|18246_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-21   71.8   0.0    8.2e-21   71.2   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    7.4e-19   65.4   2.4    3.2e-18   63.3   0.0    2.2  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    5.2e-14   49.7   0.0    8.7e-14   49.0   0.0    1.2  1  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    7.7e-09   32.6   0.0     0.0011   15.6   0.0    2.3  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    8.8e-09   32.0   0.0    3.7e-08   29.9   0.0    1.8  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
      0.002   14.3   4.7     0.0026   13.9   0.0    2.8  3  TIGR00580 mfd: transcription-repair coupling factor


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   1.2e-23   8.2e-21      17     351 ..       4     336 ..       1     361 [. 0.79

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 1.2e-23
    TIGR04121  17 fQkevleaaeegesglliapTGaGKTlavflpsliela.akekpkkglkvlyitPLkaLakdieraleapiee..lgleirvelr.....tGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvglsATvgnleeaaevllgeekeekaklvkakekkalevesllpeeeeklPwaGhlglkaleevleeikka..rttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldeps 351
                   Q   + +a +g++ l  a TG+GKTla  +p l  l  ++ +p++g+ ++ ++P + La +i   l+++ ++  ++l + ++ r     + +++   r++q+  + +iL+ Tp  l   l ++ +   + +l+++v+DE   +l     d+l   L  L + + + +++  sAT  +  +  ++l+ ++k  +++ v ++++ a++    l++    +P       ++l+ +++ +k++    t+vF  t sq    +  + ++++     +a+ Hg l++++R +v +++++    ++ +T     G+Df  vd v+qv +p      + R+GR++   ++  
  MMETSP1061-20121228|18246_1   4 IQAGSVPHALAGRDILGAAKTGSGKTLAFLIPLLELLYrQRWTPQDGVGAIVLSPTRELAGQIFAVLRKVGQQhtFSLGLLMGGRhknkqNIESNDFIREQQSIPTTNILICTPGRLLQHLEQTPYF-NVDSLQMLVLDEADRILDMGFRDQLVRILDYLPQGQAR-QTLLFSATQTKDVKHLATLSINRK--TVEYVGVHDEDAATTPDRLKQAYVLVPVE-----HKLNCLYSFLKTHlkCKTIVFFATCSQVRHAWDLFCRLRPG-LSVLAI-HGKLSQTKRLQVYDKFTTTPHSVMFATDVASRGLDFPSVDWVVQVDAPEDYDMYVHRVGRTAR-FQQDG 336
                  5777888999******************98888877776677899******************99998876541234444444441110134455556899999999*******9975555444333.3579*************999889999999999987765.78889**97665555555555555..68888888888888888888877777765.....556666666666522579***********************.677777.7***********************************************************863.33333 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   4.6e-21   3.2e-18      18     339 ..       5     353 ..       2     390 .. 0.76
   2 ?    0.8   0.8     0.041        28     459     542 ..     444     527 ..     436     530 .. 0.83

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 4.6e-21
    TIGR01389  18 qeeiieevldgrdvlavlPtGGGkslCYqvPaL...ll......kgl.tvvisPLisLmkDqvdqLraaGveaaa....lnstlsakeaqeil......kalaagelklLYvaPerleqdkfle.llerlkiallavDeahCvsqWGhDFRpeYkrlgelaerfpkapvialtatadaevre........divekLelkdaaefvssfdRenlafsvvkkenkkkqlleylkkereksGiiYassRkkveelaeaLes..kgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyseaDlallkrl 339
                  q+  + + l+grd+l+   tG Gk l + +P L   ++      +g+ ++v+sP   L     + Lr++G + ++    l  +  +k++q+i+      ++ +    ++L  +P rl+q+  +   ++  ++++l +Dea  +   G  FR +  r+     + + +  + + at +++v++          ve++ ++d++   ++ dR + a+ +v  e+k + l ++lk++ +   i++ ++ ++v +  +  +    g+++la h+ ls+ +R +  +kF++    v+ at     G+d + v +v+ +d P++ + y   +GR  R  +  +a+ll ++a+     r 
  MMETSP1061-20121228|18246_1   5 QAGSVPHALAGRDILGAAKTGSGKTLAFLIPLLellYRqrwtpqDGVgAIVLSPTRELAGQIFAVLRKVGQQHTFslglLM-GGRHKNKQNIEsndfirEQQSIPTTNILICTPGRLLQHLEQTpYFNVDSLQMLVLDEADRILDMG--FRDQLVRILDYLPQGQARQTLLFSATQTKDVKHlatlsinrKTVEYVGVHDEDA-ATTPDRLKQAYVLVPVEHKLNCLYSFLKTHLKCKTIVFFATCSQVRHAWDLFCRlrPGLSVLAIHGKLSQTKRLQVYDKFTTTPHSVMFATDVASRGLDFPSVDWVVQVDAPEDYDMYVHRVGRTARFQQDGQALLLLDPAEEDSFVRN 353
                  67778899***********************86322333333335774599*******99999*******99875333222.22233333332100000333445679*********998665526778899************999..9*9999999988888888899999998887765222211114556667777665.57789****************************************9988887742279*******************************************************************************987654322222 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.041
    TIGR01389 459 rslidqliaeglleeddeeysalqleeavkkvlkeevevllrekkvvkkekkakkkalsvevdeaLfeaLrelRkelaeeenvp 542
                  +++++++ ++  l++ ++    lq+ +   ++ kee++  +r++++ +++++  ++  +   d+ L  + r+  +++aee+ vp
  MMETSP1061-20121228|18246_1 444 EKVLENVSSRDDLRTTKNVNRKLQKLKEQIRLEKEEKKKKKRKRQEEENHETGRDEGEEDGDDDLLVVKARHEATDIAEEHAVP 527
                  567777777777888888888888888888899988888888888888888888888888889999999999999999999998 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   0.0   1.3e-16   8.7e-14      16     357 ..       5     366 ..       2     387 .. 0.73

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 1.3e-16
    TIGR00614  16 qlevinavlegrdalvvmatGgGksLCyqlpav...v......sdglt.lvisPLisLmeDqvlqLkasdisatl....LnsaqskeeakevladlkdgklkllYvtPekvsksksllqkle.....erkkltliavDeahCisqWGhDfRsdy.kalgsLkqklPsvpviaLtatasssvre........DilklLklkkpqvtitsfdRpnlkyeveekkskiledllkfivkefkgksGiiYClsrkkveqvaaeLq..kkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDvallrrllveekdekkreyklkl 357
                  q   +  +l+grd l    tG Gk L + +p +   +       dg++ +v+sP + L       L++ + + t+    L + + k++++   +d    + + +  t   +++  +llq+le     +   l ++++Dea  i + G  fR++  + l+ L q   + ++   +at ++ v++          ++ + +++    +t+ dR    y + + + + l+ l  f++++ k k+ i++  +  +v +  +     + gl+ +a h  l++ +r +v  kf+     v+ at     G++ p v  v+  ++p + + Y   +GR  R +   +++l+ +pa+     +++ ++k+ek+++ k +l
  MMETSP1061-20121228|18246_1   5 QAGSVPHALAGRDILGAAKTGSGKTLAFLIPLLellYrqrwtpQDGVGaIVLSPTRELAGQIFAVLRKVGQQHTFslglLMGGRHKNKQNIESNDFI-REQQSIPTTNILICTPGRLLQHLEqtpyfNVDSLQMLVLDEADRILDMG--FRDQLvRILDYLPQGQARQTL-LFSATQTKDVKHlatlsinrKTVEYVGVHDEDA-ATTPDRLKQAYVLVPVE-HKLNCLYSFLKTHLKCKT-IVFFATCSQVRHAWDLFCrlRPGLSVLAIHGKLSQTKRLQVYDKFTTTPHSVMFATDVASRGLDFPSVDWVVQVDAPEDYDMYVHRVGRTARFQQDGQALLLLDPAEED---SFVRNNKNEKEQRLKANL 366
                  66678889**********************9763222333322478855999******998888998777665543332888888885544445554.44566788888999999999999988888888999************99..898862556777766555544.366776666665000000003334444444333.34557777777777766.66788999**********.9986666666655554431146**********************************999*******************************************9998754...444444444444444333 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     3e-06    0.0021     265     395 ..      24     176 ..      16     179 .. 0.66
   2 !   15.6   0.0   1.6e-06    0.0011     480     573 ..     260     352 ..     210     363 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3e-06
    TIGR00643 265 VGsGKTvVavlallavi.......esGyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkk.elleeiasGe....ielvvGTha.llq..ekvef...keLalviiDEQhrF.GveQRkkLrekgkek...iaphvLvmsAT 395
                   GsGKT+  ++ ll+++       ++G  + ++ PT  LA Q +  lr++ ++ +++++lL g  +k+k++ e ++ i++ +     ++++ T   llq  e++ +   ++L++ + DE  r      R++L +  +     +a ++L++sAT
  MMETSP1061-20121228|18246_1  24 TGSGKTLAFLIPLLELLyrqrwtpQDGVGAIVLSPTRELAGQIFAVLRKVGQQHTFSLGLLMGGRHKNKQNiESNDFIREQQsiptTNILICTPGrLLQhlEQTPYfnvDSLQMLVLDEADRIlDMGFRDQLVRILDYLpqgQARQTLLFSAT 176
                  69*****99999999874444444689**********************************99876665551434444443311116788888652444223333322256888888888774244455555544432222255556666665 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 1.6e-06
    TIGR00643 480 fpklnvallhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmv.iedaeRfGlsqLHQLRGRvgRgekksyclLvaepkseeakkR 573
                   p l+v  +hg+l++ ++ +v  +F     +++ aT v   G+d P +  +v + ++e + +   H + GR +R ++++ +lL+ +p +e++  R
  MMETSP1061-20121228|18246_1 260 RPGLSVLAIHGKLSQTKRLQVYDKFTTTPHSVMFATDVASRGLDFPSVDWVVqVDAPEDYDM-YVHRV-GRTARFQQDGQALLLLDPAEEDSFVR 352
                  46778899****************************************98883555677776.68987.99999999999999999988877665 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   5.4e-11   3.7e-08      41     168 ..       5     145 ..       2     210 .. 0.79
   2 ?   -0.9   0.0      0.11        74     334     386 ..     293     345 ..     272     399 .. 0.77

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 5.4e-11
    TIGR03817  41 qaraaelahaGehvvvatgtasGkslayllPvlsalaedp.....ratalylaPtkalaadqlravkelee......rdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflr..alryvvvdechs 168
                  qa    +a aG+++  a+ t sGk+la+l+P+l+ l +++     +  a+ l+Pt+ la    ++++++ +        +    +    + e+ ++ire+  +  tn  +   g l +h   + +++  +l+ +v+de+ +
  MMETSP1061-20121228|18246_1   5 QAGSVPHALAGRDILGAAKTGSGKTLAFLIPLLELLYRQRwtpqdGVGAIVLSPTRELAGQIFAVLRKVGQqhtfslGLLMGGRHKNKQNIESNDFIREQQSIPTTNILICTPGRLLQHLEQTPYFNvdSLQMLVLDEADR 145
                  566677899****************************995445558899********************9954444323344456666778899*************************99999885338********976 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.11
    TIGR03817 334 aatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvardd 386
                   at+    G+d   +d vv    P     +  ++Gr+ r  qd  ++l+    
  MMETSP1061-20121228|18246_1 293 FATDVASRGLDFPSVDWVVQVDAPEDYDMYVHRVGRTARFQQDGQALLLLDPA 345
                  56777788999999*************9999********99998888875443 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0     0.085        58     498     582 ..      50     145 ..      47     146 .. 0.64
   2 !   13.9   0.0   3.8e-06    0.0026     679     765 ..     257     342 ..     240     364 .. 0.80
   3 ?   -4.2   3.4       1.2     8e+02     137     175 ..     454     491 ..     346     646 .. 0.43

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.085
    TIGR00580 498 gkQvavlvPTTlLaeQHfetlkeRfknfpvkiellsrfrkak....ekkeilke.laeGkidiliGT.hkllqk..dvkfkd...lgLliiDEEqr 582
                  g   +vl+PT  La Q f  l++  +++   ++ll   r+++    e+++ ++e     + +ili T  +llq+  ++ +++   l +l++DE  r
  MMETSP1061-20121228|18246_1  50 GVGAIVLSPTRELAGQIFAVLRKVGQQHTFSLGLLMGGRHKNkqniESNDFIREqQSIPTTNILICTpGRLLQHleQTPYFNvdsLQMLVLDEADR 145
                  56679*****************99999999888886555444111145554444044467888888844777742233344322277888888665 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 3.8e-06
    TIGR00580 679 relvPeariaiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTii.ierAdkfGlaqLyQLr.GRvGRskkkayayllv 765
                   +l P +++  +Hg++++ +  +v  +F++  + v+ +T +   G+d p++  ++ ++  + +   ++y  r GR  R ++ + a ll+
  MMETSP1061-20121228|18246_1 257 CRLRPGLSVLAIHGKLSQTKRLQVYDKFTTTPHSVMFATDVASRGLDFPSVDWVVqVDAPEDY---DMYVHRvGRTARFQQDGQALLLL 342
                  5788***********************************************987724444444...44444446777777777776665 PP

  == domain 3    score: -4.2 bits;  conditional E-value: 1.2
    TIGR00580 137 depekvekaaeelereleefleaaleakklisaerlsle 175
                  d+ +++++ +++l++  e++  +++e+kk +  +r++ e
  MMETSP1061-20121228|18246_1 454 DDLRTTKNVNRKLQKLKEQIRLEKEEKKKKKR-KRQEEE 491
                  22222222222222211111111111111111.111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.51u 0.17s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 2221.82
//
Query:       MMETSP1061-20121228|18276_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 1801.94
//
Query:       MMETSP1061-20121228|18272_1  [L=955]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (955 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.34
# Mc/sec: 3707.34
//
Query:       MMETSP1061-20121228|18288_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.17s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|18284_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 2196.30
//
Query:       MMETSP1061-20121228|18294_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1872.29
//
Query:       MMETSP1061-20121228|18302_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-12   42.8   0.0    7.6e-12   42.5   0.0    1.2  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
    1.2e-09   35.5   0.0    1.5e-09   35.1   0.0    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
    1.2e-05   22.4   0.0    1.6e-05   21.9   0.0    1.1  1  TIGR02911 sulfite_red_B: sulfite reductase, subunit B
    0.00019   18.2   0.0    0.00025   17.9   0.0    1.1  1  TIGR03224 benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein


Domain annotation for each model (and alignments):
>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   7.4e-15   7.6e-12      34     178 ..      63     211 ..      41     264 .. 0.82

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 7.4e-15
    TIGR02160  34 epGqhltlkaeldGeelrrsys.icdavadgeirvavkkieGGlfstwaneeiraGdtlevmaPqGrftskldaerakhyvavaaGsGitPilaivktvlaae....pkstftlvyanrrsasvmfaeeladlkdkypqrfallhvlsre 178
                       +  ka++  e++ r y+ i +    g   + vk   G  +s+++ + +++Gdt++    + + +++   + +k+ +++  G+GitP++  ++++l  +    ++ ++ l+y+ r++++++ +  ++     yp +++++hvls  
  MMETSP1061-20121228|18302_1  63 STCACILAKASIASEDVVRPYTpISTNELVGCFDLLVKDYGGNGMSNHMCKILKVGDTVDFKHIEFNVKKQAPFP-QKKIIMLVGGTGITPMIQALHAILGGDetetNHNEVVLFYGSRTEDDILGRTLVDSWASDYPDQLKVVHVLSDV 211
                  55556667999999*****9975777888999****************************987765555555444.89999999*************9997541112678899**********************************975 PP

>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   1.5e-12   1.5e-09     249     385 ..     115     261 ..     100     284 .. 0.73

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 1.5e-12
    TIGR01941 249 lkpGdkvtvsGpfGeffvkdt....daelvfigGGaGmaplrshildll...krlkskrkisfwyGarskrevfyeedfdeleaendn.fkyhvalsdplpedn..wtGytgfihnvlyenylkdh..dapediefymcGpplmnaavi 385
                  lk Gd v     + ef vk +    ++++++++GG+G++p+   +   l   ++   + ++ ++yG+r++ +++ +   d+ ++++++ +k   +lsd  p+    w+G+tg+i + + e+  +    +  +d+  ++cGpp m +a+ 
  MMETSP1061-20121228|18302_1 115 LKVGDTVDF--KHIEFNVKKQapfpQKKIIMLVGGTGITPMIQALHAILggdETETNHNEVVLFYGSRTEDDILGRTLVDSWASDYPDqLKVVHVLSDVSPDGTtgWKGRTGYITKEVIEEEAEGCgpECGDDVIVFVCGPPPMYSALC 261
                  667775544..355666666433336899************8876666622245566789*************************9752677778***999754349*******998888776653226788************99864 PP

>> TIGR02911  sulfite_red_B: sulfite reductase, subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.6e-08   1.6e-05      48     202 ..      85     257 ..      81     284 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.6e-08
    TIGR02911  48 pisvseigegyvdltirkvgk..vtdev.felkegdklflrgpygngfdvdnykdkelvvvaggtgvapvkgvve.yfa..knskevkeldlivgfktredilfkedlaewkeki....nlvltl.de...aeeddkykvglvtkyiaelklkdi.....eevqvivvgppiml 202
                  pis  e+  g  dl+++  g   +++++   lk+gd++ ++    n  +   + +k++++  ggtg++p+   ++  +   +   + +e+ l  g +t++dil +  ++ w +++    ++v  l d+   + ++ k+++g +tk + e + +       ++v v v gpp m 
  MMETSP1061-20121228|18302_1  85 PISTNELV-GCFDLLVKDYGGngMSNHMcKILKVGDTVDFKHIEFNVKKQAPFPQKKIIMLVGGTGITPMIQALHaILGgdETETNHNEVVLFYGSRTEDDILGRTLVDSWASDYpdqlKVVHVLsDVspdGTTGWKGRTGYITKEVIEEEAEGCgpecgDDVIVFVCGPPPMY 257
                  56655553.456777777654113333303467888888888888888888899***************765555045421444556677888899***************8654221155544424311145567999******99888876543333378889999999886 PP

>> TIGR03224  benzo_boxA: benzoyl-CoA oxygenase/reductase, BoxA protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   2.4e-07   0.00025     237     312 ..     107     184 ..      69     198 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 2.4e-07
    TIGR03224 237 asnylcd.lkkgdkvqvigp.fgstflmpnhpessilmictgtgsapm.ramterrrrrrakgeggklllffgartkee 312
                   sn++c  lk gd v+     f         p+ +i+m+  gtg +pm +a+        ++++  +++lf+g+rt+++
  MMETSP1061-20121228|18302_1 107 MSNHMCKiLKVGDTVDFKHIeFNVKK-QAPFPQKKIIMLVGGTGITPMiQALHAILGGDETETNHNEVVLFYGSRTEDD 184
                  59****85799****98765155555.5558999*************956888888889999999***********986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1509.96
//
Query:       MMETSP1061-20121228|18309_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.4   0.5       0.04   11.4   0.4    1.7  2  TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family
        7.3    4.3  11.5        2.3    5.9   2.8    2.1  2  TIGR03949 bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family


Domain annotation for each model (and alignments):
>> TIGR01411  tatAE: twin arginine-targeting protein translocase, TatA/E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.4   1.9e-05      0.04       7      21 ..       3      17 ..       1      18 [. 0.89
   2 ?   -2.0   0.1      0.29   5.9e+02       9      17 ..      30      38 ..      27      41 .. 0.63

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.9e-05
    TIGR01411  7 lliilvvilLlFGak 21
                  ++++vv++L FG++
  MMETSP1061-20121228|18309_1  3 VVVVVVVVALAFGTN 17
                 69***********95 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.29
    TIGR01411  9 iilvvilLl 17
                  i++v+ L+
  MMETSP1061-20121228|18309_1 30 AIACVVDLV 38
                 477777666 PP

>> TIGR03949  bact_IIb_cerein: class IIb bacteriocin, lactobin A/cerein 7B family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.6    0.0059        12      24      38 ..       4      18 ..       1      23 [. 0.63
   2 ?    5.9   2.8    0.0011       2.3      20      43 ..      28      52 ..      24      54 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0059
    TIGR03949 24 cvgggaaaaagagft 38
                 +v+++++a+a+++ +
  MMETSP1061-20121228|18309_1  4 VVVVVVVALAFGTNS 18
                 456677777766655 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0011
    TIGR03949 20 gvAi.cvgggaaaaagagftaGaaa 43
                 +vAi cv+ ++ + +++ +++Gaa+
  MMETSP1061-20121228|18309_1 28 VVAIaCVVDLVCGRVAGFAAGGAAS 52
                 7999999999999999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 345.69
//
Query:       MMETSP1061-20121228|18319_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   14.2   2.4       0.93    8.0   0.2    3.0  3  TIGR00106 TIGR00106: uncharacterized protein, MTH1187 family


Domain annotation for each model (and alignments):
>> TIGR00106  TIGR00106: uncharacterized protein, MTH1187 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.26   1.1e+03      47      57 ..      89      99 ..      64     123 .. 0.53
   2 ?    8.0   0.2   0.00023      0.93      16      51 ..     147     182 ..     143     201 .. 0.87
   3 ?    4.9   0.0    0.0022       8.9      28      79 ..     199     249 ..     186     266 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.26
    TIGR00106 47 dldellevika 57
                 d+d + e++++
  MMETSP1061-20121228|18319_1 89 DMDAVREMVQQ 99
                 33333333333 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00023
    TIGR00106  16 SvssyVakvqkvlkeeklkyelsamgTllEgdldel 51 
                   +s y ++vqk+l+ e++k++ +  +   E++ +++
  MMETSP1061-20121228|18319_1 147 TLSLYMKSVQKMLETEGIKVQEEETNGRSEAETSKI 182
                  6899*****************999999999988776 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0022
    TIGR00106  28 lkeeklkyelsamgTllEgdldellevikaiheavfekgsdrvqsslkidtr 79 
                  +   +++  ++  g    ++++++l  ++a+h+a  e+g++ + +   ++ +
  MMETSP1061-20121228|18319_1 199 FDMGEIRACVDQPGSRSLSEMQNMLTQLEAVHNACTEEGCQTNAE-CDVEVK 249
                  555566666666666666789999***************987643.334444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       316  (0.0770356); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1765.35
//
Query:       MMETSP1061-20121228|18344_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1494.12
//
Query:       MMETSP1061-20121228|18340_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 1691.86
//
Query:       MMETSP1061-20121228|18347_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1669.95
//
Query:       MMETSP1061-20121228|18357_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1228.07
//
Query:       MMETSP1061-20121228|18368_1  [L=584]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (584 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 2408.80
//
Query:       MMETSP1061-20121228|18392_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|18453_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|18452_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1017.42
//
Query:       MMETSP1061-20121228|18459_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.22
# Mc/sec: 2501.79
//
Query:       MMETSP1061-20121228|18463_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   15.6   0.0     0.0036   15.0   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.7e-07    0.0036      35     131 ..     135     236 ..     127     264 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8.7e-07
    TIGR02072  35 pakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls....nvqficgdieklplekks.....fDlivSnlalQWlddlsevlaelarvlkpgGlla 131
                  p ++Ld+G+G G+ t+ + +++   ++ alD s e  ++   + +    +v+f++ d e+++ + k+     +D+i  n a+      +++   ++++lkp+Gll+
  MMETSP1061-20121228|18463_1 135 PPRALDVGAGAGVSTQVIYEQLGYTNIDALDWSGEAWRINVVEGGycppTVHFYELDDERFVEQWKKenlgkYDVIAFNFAVN----REKAQYFCKNLLKPDGLLL 236
                  6799*****************************99998887777788999999999999988655556688899999888874....3334444667777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1904.41
//
Query:       MMETSP1061-20121228|18460_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-05   20.4   0.1     0.0076   12.8   0.0    2.2  2  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00039   17.2   0.1      0.051   10.2   0.0    2.3  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00092   15.8   0.1      0.051   10.1   0.0    2.1  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
     0.0011   16.1   0.1        0.2    8.7   0.0    2.2  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0019   15.1   1.4        0.1    9.4   0.1    2.3  2  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0055   13.1   0.0      0.012   11.9   0.0    1.5  1  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
     0.0055   13.4   0.0      0.017   11.8   0.0    1.7  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0077   13.3   0.0      0.054   10.5   0.0    1.9  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
     0.0078   12.7   0.1      0.025   11.0   0.0    1.7  2  TIGR01176 fum_red_Fp: fumarate reductase, flavoprotein subunit
     0.0079   12.5   0.2      0.039   10.2   0.0    1.9  2  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
  ------ inclusion threshold ------
      0.011   12.7   0.6      0.023   11.6   0.0    1.8  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.019   11.4   0.0       0.12    8.8   0.0    1.9  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
      0.027   10.7   0.0       0.11    8.6   0.0    1.8  2  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2


Domain annotation for each model (and alignments):
>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0048       1.5       2      31 ..     240     271 ..     239     275 .. 0.84
   2 !   12.8   0.0   2.4e-05    0.0076     132     193 ..     355     415 ..     344     420 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0048
    TIGR01813   2 vvvvGsGlAGlsaalea..kkaglaevvvleK 31 
                  vvvvG G AGl  al++   ++g+++ +++++
  MMETSP1061-20121228|18460_1 240 VVVVGMGPAGLFCALQLalGSNGRIQPILIDR 271
                  9***********99875226999999999997 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 2.4e-05
    TIGR01813 132 ivqklskkakkegvelrlnskvedlikddqgqvtGvkvkekgkkikikaakaVvlatGGfgs 193
                  + +k++  + + g +++  +k+++l +d + qv Gv +++ g++ ++ + ++VvlatG  ++
  MMETSP1061-20121228|18460_1 355 LLRKMRFRLAELGGQIHFGTKMTNLKMDGN-QVCGVFAEDVGGNQHYFEGDHVVLATGHSAR 415
                  56788888999999*************999.**************************96655 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00016     0.051       1      19 [.     240     258 ..     240     277 .. 0.86
   2 !    4.7   0.0    0.0075       2.4     111     173 ..     358     419 ..     349     450 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00016
    TIGR00275   1 viiiGgGaaGlmaAitaae 19 
                  v+++G G+aGl++A+++a 
  MMETSP1061-20121228|18460_1 240 VVVVGMGPAGLFCALQLAL 258
                  79*************9985 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0075
    TIGR00275 111 aLlkelkelgvevlteskvksi.kkeeekfevet.....ekkeleakkvilatGgksypklGstgsgye 173
                   +  +l+elg +++  +k++++  + ++ ++v +     +++ +e ++v+latG        s  + ye
  MMETSP1061-20121228|18460_1 358 KMRFRLAELGGQIHFGTKMTNLkMDGNQVCGVFAedvggNQHYFEGDHVVLATGH-------SARDVYE 419
                  5567899***************5555555666554446689999**********8.......4445555 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.016       5.2       3      21 ..     239     257 ..     237     264 .. 0.89
   2 !   10.1   0.0   0.00016     0.051     216     288 ..     358     433 ..     348     453 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.016
    TIGR01350   3 dvvviGgGpgGYvaAiraa 21 
                   vvv+G Gp+G  +A + a
  MMETSP1061-20121228|18460_1 239 TVVVVGMGPAGLFCALQLA 257
                  59*************9987 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00016
    TIGR01350 216 vlkkklkkkgvkiltnakvtevekeedevv...veakkkevetleaekvLvavGrkpnleelgleklgvelderga 288
                   ++ +l + g +i++++k+t+++ + ++v    +e  +++++  e+++v++a G +++    +l++ gv+l+ +g+
  MMETSP1061-20121228|18460_1 358 KMRFRLAELGGQIHFGTKMTNLKMDGNQVCgvfAEDVGGNQHYFEGDHVVLATGHSARDVYEDLHRAGVKLEPKGF 433
                  566678888999***************99887667677799*****************9999*********99874 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.1   0.1    0.0079       2.5       1      18 [.     240     257 ..     240     275 .. 0.84
   2 !    8.7   0.0   0.00065       0.2     202     264 ..     348     413 ..     342     430 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0079
    TIGR03467   1 vvvvGgGlAGLaAAveLa 18 
                  vvvvG G AGL +A++La
  MMETSP1061-20121228|18460_1 240 VVVVGMGPAGLFCALQLA 257
                  89*************997 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00065
    TIGR03467 202 prvdLselfvepaarylesrggevrlgtrvreleasaggiralve..aaeet..laadavvlAvppe 264
                   +++L +l+ + ++ +l++ gg++++gt++++l+++++++       +++++  ++ d+vvlA+ + 
  MMETSP1061-20121228|18460_1 348 GTDNLVRLLRK-MRFRLAELGGQIHFGTKMTNLKMDGNQVCGVFAedVGGNQhyFEGDHVVLATGHS 413
                  55666666665.78899********************9986533324333335899*******9764 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.1     0.012       3.7       3      33 ..     240     273 ..     239     275 .. 0.74
   2 !    9.4   0.1   0.00032       0.1     263     319 ..     353     411 ..     350     414 .. 0.90

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.012
    TIGR03378   3 viiiGgGlaGlscalrla..eaGk.ktaiiaaGq 33 
                  v+++G G aGl cal+la   +G+ + ++i +Gq
  MMETSP1061-20121228|18460_1 240 VVVVGMGPAGLFCALQLAlgSNGRiQPILIDRGQ 273
                  79*************9873344532556777776 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00032
    TIGR03378 263 iRleealkrrFeklGGvllkgdevlraeleenrvariftrnh..edipleakqfvlasG 319
                  +Rl ++++ r  +lGG +  g ++++ ++++n+v  +f++    ++  +e +++vla+G
  MMETSP1061-20121228|18460_1 353 VRLLRKMRFRLAELGGQIHFGTKMTNLKMDGNQVCGVFAEDVggNQHYFEGDHVVLATG 411
                  699999*********************************9872246679*********9 PP

>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   3.9e-05     0.012     150     240 ..     361     450 ..     348     457 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.9e-05
    TIGR03377 150 ldakehGariltytkvvgliregdrvtgvkvedlktgeeeeieaevvvnaaGaWaqeiae.ladlkielvpakGvllvlnhRlnnkvinRlr 240
                  +   e G++i   tk+++l ++g++v+gv +ed+  g+++ +e ++vv a+G  a ++ e l    ++l p kG  + +     +k+in+++
  MMETSP1061-20121228|18460_1 361 FRLAELGGQIHFGTKMTNLKMDGNQVCGVFAEDVG-GNQHYFEGDHVVLATGHSARDVYEdLHRAGVKLEP-KGFAVGFRIEHPQKIINKIQ 450
                  556799***********************999875.677789****************8723445677665.89999999889999999886 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   5.3e-05     0.017     121     153 ..     226     257 ..     201     265 .. 0.81
   2 ?   -2.1   0.0      0.87   2.8e+02     367     393 ..     394     420 ..     378     435 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.3e-05
    TIGR01316 121 GieeeeekapstkkkvaviGaGpaGlavasela 153
                    ee++e +++t k v v+G GpaGl +a +la
  MMETSP1061-20121228|18460_1 226 ANEENTENQDQT-KTVVVVGMGPAGLFCALQLA 257
                  445556666666.5689************9998 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.87
    TIGR01316 367 vtdeevkleadavivaiGqeankiiae 393
                  v+++++ +e d v++a G+ a  +  +
  MMETSP1061-20121228|18460_1 394 VGGNQHYFEGDHVVLATGHSARDVYED 420
                  567788899999999999988877654 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00017     0.054     133     204 ..     225     293 ..     205     320 .. 0.76
   2 ?    0.1   0.0      0.25        79     201     259 ..     363     433 ..     344     438 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00017
    TIGR03169 133 eellekakaseetkslavvGgGaagvElalalrkrlkkrglkaevslaseakllqalsakvrklvkrllakr 204
                  ++ +e+++++ +tk+++vvG G ag+  al l+  l ++g+  +  l+++++ ++++ + + kl++r+l ++
  MMETSP1061-20121228|18460_1 225 SANEENTENQDQTKTVVVVGMGPAGLFCALQLA--LGSNGRI-QPILIDRGQPVEKRGQDIGKLIHRRLLNE 293
                  45667778899999***********87766665..5555544.23566777778888888888888777655 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.25
    TIGR03169 201 lakrgievlekeevtevede.........alllaegetleadavllatgakapaw...LaesglsldedGf 259
                  la+ g +++  +++t+ + +         + + ++++  e d+v+latg +a  +   L++ g++l+++Gf
  MMETSP1061-20121228|18460_1 363 LAELGGQIHFGTKMTNLKMDgnqvcgvfaEDVGGNQHYFEGDHVVLATGHSARDVyedLHRAGVKLEPKGF 433
                  55555566666666666655544444443222357888999*********998764447888999999998 PP

>> TIGR01176  fum_red_Fp: fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.51   1.6e+02       4      34 ..     238     269 ..     236     277 .. 0.73
   2 !   11.0   0.0   7.9e-05     0.025     157     247 ..     377     470 ..     367     475 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.51
    TIGR01176   4 adiavigaggaglraaiaaa.eanphlevali 34 
                  + ++v+g g agl +a+  a  +n +++  li
  MMETSP1061-20121228|18460_1 238 KTVVVVGMGPAGLFCALQLAlGSNGRIQPILI 269
                  6799***********99877245666665555 PP

  == domain 2    score: 11.0 bits;  conditional E-value: 7.9e-05
    TIGR01176 157 vdllvddgrvrglvaielaegelvtikadavvlatggagr.vyrfntnggivt.gdgmalalragvplrdmefvqyhptglpg..tgilltegar 247
                  ++l +d  +v+g+ a ++  g+    + d vvlatg + r vy+    +g++    g+a+ +r   p + ++ +qy     p   tg llt+ a 
  MMETSP1061-20121228|18460_1 377 TNLKMDGNQVCGVFAEDV-GGNQHYFEGDHVVLATGHSARdVYEDLHRAGVKLePKGFAVGFRIEHPQKIINKIQYGDEWGPSvkTGKLLTDRAN 470
                  678889999***999775.699999***********988779*9999999986268********************8876664338888888765 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.1       0.2        62       2      19 ..     240     257 ..     239     270 .. 0.87
   2 !   10.2   0.0   0.00012     0.039     144     226 ..     368     451 ..     350     471 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.2
    TIGR01812   2 vvivGaGlAGlraAveaa 19 
                  vv+vG G AGl  A+++a
  MMETSP1061-20121228|18460_1 240 VVVVGMGPAGLFCALQLA 257
                  89************9987 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00012
    TIGR01812 144 veifeeyfvldliledkevkGvvaidlktgevvvlrakavvlatGGagr.vyk.tttnavivtGdGlaialragvplkdmEfvqf 226
                   +i+  + +++l +++++v Gv a d+  g+ ++++   vvlatG ++r vy+      v  +  G a+ +r   p k ++ +q+
  MMETSP1061-20121228|18460_1 368 GQIHFGTKMTNLKMDGNQVCGVFAEDV-GGNQHYFEGDHVVLATGHSARdVYEdLHRAGVKLEPKGFAVGFRIEHPQKIINKIQY 451
                  56666778899*************997.6999*************9998799934445567888999999988888777777776 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.3         4   1.3e+03       1      18 [.     240     257 ..     240     258 .. 0.93
   2 ?   11.6   0.0   7.3e-05     0.023     153     216 ..     355     423 ..     342     451 .. 0.81

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 4
    TIGR02352   1 vlviGgGviGlsvAveLa 18 
                  v+v+G G  Gl  A++La
  MMETSP1061-20121228|18460_1 240 VVVVGMGPAGLFCALQLA 257
                  79**************97 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 7.3e-05
    TIGR02352 153 llkaLvkaleklGveiieevevqeieargekvtavk.....tssekvqadqvvlaaGawakellplalr 216
                  ll+ ++ +l++lG++i+  +++++++ +g++v +v      +++  ++ d+vvla+G  a+ + ++ +r
  MMETSP1061-20121228|18460_1 355 LLRKMRFRLAELGGQIHFGTKMTNLKMDGNQVCGVFaedvgGNQHYFEGDHVVLATGHSARDVYEDLHR 423
                  4555566899*********************9876511221677899**************99996655 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   0.00037      0.12     138     161 ..     234     257 ..     225     275 .. 0.82
   2 ?   -0.2   0.0      0.19        60     375     416 ..     391     433 ..     366     449 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00037
    TIGR01318 138 kktgkrvaviGaGpaGlacadvla 161
                  ++++k v v+G GpaGl ca  la
  MMETSP1061-20121228|18460_1 234 QDQTKTVVVVGMGPAGLFCALQLA 257
                  667899**************8876 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.19
    TIGR01318 375 aeivaGseavleadvviiafGfepha.mewlaehgikldskGr 416
                  ae v G ++ +e d v++a G +++   e l++ g+kl+ kG 
  MMETSP1061-20121228|18460_1 391 AEDVGGNQHYFEGDHVVLATGHSARDvYEDLHRAGVKLEPKGF 433
                  678999****************997625889999999998885 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0   0.00036      0.11     368     399 ..     226     257 ..     207     276 .. 0.76
   2 ?   -0.9   0.0      0.27        86     559     619 ..     368     428 ..     347     445 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00036
    TIGR03997 368 keavtlkkarrrkkvlvvGgGPaGleaaataa 399
                   ++ + ++  ++k+v+vvG GPaGl  a + a
  MMETSP1061-20121228|18460_1 226 ANEENTENQDQTKTVVVVGMGPAGLFCALQLA 257
                  445555666778*************9997655 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.27
    TIGR03997 559 kgielitdlvvievdgatvk.vv.hrytgeveelaevDtvvlalaqrpedelylslkdkvlev 619
                    i++ t+++ +++dg++v  v+ +  +g+++ ++  D vvla+ + ++ ++y +l+  ++++
  MMETSP1061-20121228|18460_1 368 GQIHFGTKMTNLKMDGNQVCgVFaEDVGGNQHYFE-GDHVVLATGHSAR-DVYEDLHRAGVKL 428
                  34667777777788888664133144445555554.8889888888776.4788887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        39  (0.00950756); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.48u 0.14s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2618.38
//
Query:       MMETSP1061-20121228|18482_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   11.9   0.0        2.7    5.2   0.0    2.0  2  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0   0.00089       3.6      37      72 ..      34      69 ..      30      85 .. 0.86
   2 ?    5.2   0.0   0.00066       2.7     162     195 ..     104     137 ..      96     144 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00089
    TIGR03633 37 tkegvvlivdkritsklleaesiekifkiDdhvgaa 72
                 t++++ l ++  ++sk++++ s  +i+ +Dd+   +
  MMETSP1061-20121228|18482_1 34 TRKTLFLSSESSFRSKMVKSPSGRRIYIVDDQRDSV 69
                 667888999*********************985554 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.00066
    TIGR03633 162 agrekvlellekeykedlsldeaielalkalaka 195
                  +++ ++ ++le ey+ed +++  ++l l++++k 
  MMETSP1061-20121228|18482_1 104 EESWAADQYLEGEYREDSNIEVEVDLLLTTIEKD 137
                  56667889******************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 1049.91
//
Query:       MMETSP1061-20121228|18505_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00083   17.0   0.0       0.17    9.5   0.0    2.4  2  TIGR02182 GRXB: glutaredoxin, GrxB family
    0.00092   16.7   0.0       0.14    9.6   0.0    2.3  2  TIGR01262 maiA: maleylacetoacetate isomerase
     0.0017   16.4   0.0      0.047   11.8   0.0    2.3  2  TIGR02181 GRX_bact: glutaredoxin 3
  ------ inclusion threshold ------
      0.012   14.0   0.0          1    7.8   0.0    2.3  2  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
      0.048   11.7   0.0       0.18    9.9   0.0    2.0  2  TIGR02180 GRX_euk: glutaredoxin


Domain annotation for each model (and alignments):
>> TIGR02182  GRXB: glutaredoxin, GrxB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0    0.0002      0.17       2      73 ..     130     206 ..     129     217 .. 0.73
   2 !    5.2   0.0    0.0043       3.5       2      73 ..     261     335 ..     260     339 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.0002
    TIGR02182   2 LyiYdhCPfCvrarmifGlkniplekivLlnDde....etpirliGkkqvPiLqk.eDgralaeslDivkyidelag 73 
                  Ly Yd  P+C r+r    l+++ +e        +    ++     G++ vP L   + g+ l es D ++y+ +++g
  MMETSP1061-20121228|18505_1 130 LYEYDASPYCKRVREFLNLLDLTVEYRPCPGARQggfsDELFAATGRRTVPYLYDpNTGEGLFESGDQIEYLLRHYG 206
                  899*******************9998765433321111334456788888887643678888888888888887766 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0043
    TIGR02182   2 LyiYdhCPfCvrarmifGlkniplekivLlnD..deetpirliGkkqvPiLqk.eDgralaeslDivkyidelag 73 
                  L+ Y+  Pf   +r++ G + +p   +       + ++ +   G+ qvP L+  + g  l es Di +y++e ++
  MMETSP1061-20121228|18505_1 261 LWGYESSPFVRCVRVLLGELCLPHTLVSCSRGsrNRDELVARTGRFQVPYLVDpNTGIELFESEDICRYLEEVYT 335
                  6668888887777778888887766665544311444455667999***9985377899***********98765 PP

>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00017      0.14       2      77 ..     130     205 ..     129     215 .. 0.87
   2 !    4.8   0.0    0.0051       4.2      32      78 ..     289     335 ..     262     340 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00017
    TIGR01262   2 lYsyfrSsasyRvRiaLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLki.degevltqSlAiieyLeety 77 
                  lY+y  S    RvR  L+L +++ e++p    ++G  +++e  a    ++vP L + + ge l +S   ieyL ++y
  MMETSP1061-20121228|18505_1 130 LYEYDASPYCKRVREFLNLLDLTVEYRPCPGARQG-GFSDELFAATGRRTVPYLYDpNTGEGLFESGDQIEYLLRHY 205
                  9******************************9985.4666777778899****987255899**********98877 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0051
    TIGR01262  32 LlkdGeqkkeefkalNPqelvPtLkide.gevltqSlAiieyLeetyp 78 
                    + G ++++e  a+    +vP L++ + g+ l +S  i  yLee y 
  MMETSP1061-20121228|18505_1 289 CSR-GSRNRDELVARTGRFQVPYLVDPNtGIELFESEDICRYLEEVYT 335
                  455.8888899999999999***998543899*************996 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   5.8e-05     0.047       2      55 ..     129     183 ..     128     190 .. 0.81
   2 ?    2.2   0.0     0.055        45       7      53 ..     265     310 ..     259     316 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.8e-05
    TIGR02181   2 viYtkksCpycsrAkalLeekgv..efeeievdkdkeareemierskgrrtvPQif 55 
                  v+Y  +  pyc+r +++L+  ++  e++ +   ++    +e+++ + grrtvP ++
  MMETSP1061-20121228|18505_1 129 VLYEYDASPYCKRVREFLNLLDLtvEYRPCPGARQGGFSDELFAAT-GRRTVPYLY 183
                  789999************9877622566666677778899999999.7*****876 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.055
    TIGR02181   7 ksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQ 53 
                  +s p+ +  + lL e  +  + ++ ++ +++r+e+++r+ gr  vP 
  MMETSP1061-20121228|18505_1 265 ESSPFVRCVRVLLGELCLPHTLVSCSRGSRNRDELVART-GRFQVPY 310
                  56688888888899999999999999999**********.6999995 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.0    0.0012         1       3      53 ..     129     181 ..     127     192 .. 0.82
   2 ?    3.9   0.0      0.02        17      30      73 ..     287     330 ..     263     331 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0012
    TIGR02196   3 kvYttpwCppCkkakeyLk..skgiafeeidvekdsaaaeellkklgqrsvPv 53 
                   +Y  +  p+Ck+++e+L+     ++++ +  +++    +el   +g+r vP 
  MMETSP1061-20121228|18505_1 129 VLYEYDASPYCKRVREFLNllDLTVEYRPCPGARQGGFSDELFAATGRRTVPY 181
                  6899999**********983345688888888888888888888888888886 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.02
    TIGR02196  30 idvekdsaaaeellkklgqrsvPvivigekivvGFdkekldkll 73 
                  +   ++s++++el+ ++g+  vP +v  ++ +  F+ e + ++l
  MMETSP1061-20121228|18505_1 287 VSCSRGSRNRDELVARTGRFQVPYLVDPNTGIELFESEDICRYL 330
                  566778999**************998657767777777766665 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   0.00023      0.18       3      59 ..     130     183 ..     128     190 .. 0.76
   2 ?   -2.8   0.0       2.1   1.7e+03      37      56 ..     290     309 ..     285     311 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00023
    TIGR02180   3 vfsKsyCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrif 59 
                  +++    pYck+++e+L+ l +   +e+        +  + d L   tg+rtVP ++
  MMETSP1061-20121228|18505_1 130 LYEYDASPYCKRVREFLNLLDLT--VEYRPCPGA-RQGGFSDELFAATGRRTVPYLY 183
                  5666678***********66555..444444444.56679999999********887 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.1
    TIGR02180  37 engselqdyLkeltgqrtVP 56 
                  + gs+ +d L   tg+  VP
  MMETSP1061-20121228|18505_1 290 SRGSRNRDELVARTGRFQVP 309
                  67788899999999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1875.35
//
Query:       MMETSP1061-20121228|18514_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-205  680.6   0.0   1.8e-205  680.4   0.0    1.0  1  TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase


Domain annotation for each model (and alignments):
>> TIGR01358  DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  680.4   0.0  4.4e-209  1.8e-205       1     441 [.      44     485 ..      44     487 .. 1.00

  Alignments for each domain:
  == domain 1    score: 680.4 bits;  conditional E-value: 4.4e-209
    TIGR01358   1 wsleswrskpaaqlPeyPdaealeavldtleslPPlvlageilklkeklaevakGeafllqgGdcaesfkeveadnirdklrvllqmavvltygaslPvvkvgriaGqyakPrsepieakdgvtlpsyrGdvingaafdeaarvpdperlvrayaksaatlnllraltsgGyadlkkvheWnlefvkkspagaryeklaeeidealrfmsavgvaeae.alkrvelytsheallldyeealtrvdskegqlfdlsahllWiGertrqldgahveflrgvknPigikvgpsmeadellklievldPenePGrltlisrlGaekiaeklPelleavkaaGravvWvtdpmhGntleaasGyktrrfddilsevkeffevhkaeGthpGGvhleltGedvteclGGareitetdlasryetacdPrlnaeqslelaflvaeklre 441
                  ws+ sw+sk+  q P+y d+++ ++++++le++ Plv+age+++l+e+la++ +G++fll gGdcae+f+e++ d+ird +rv+lqma+vlt+g+ +P++kvgr+aGq+akPrsep e++dgvtlpsyrGd+in ++f+ ++r++ p  ++ ay++sa tln+lra+ +gGyad++++h+Wnl+fv+++++g+ry+ +a+++de+lrfm+a+gv++++ ++++++++t+he+lll+ye++ltr+ds++g+++d+sah+lW+Gertrqldgah+ef rgv+nP+g+k++++ +++ell +i+ ++P+n PGrlt+++r+Gaek++++lP l++av+++G++v+W++dp+hGnt+++ +Gyktr f++i++e+++ff+vh++ G+hpGGvhle+tGedvtec+GG  ++te  l +ry+t cdPrln +q+lelafl+ae++r+
  MMETSP1061-20121228|18514_1  44 WSPTSWKSKTVSQPPKYEDEDEYNETIKQLERCSPLVFAGEVRTLHEQLARACSGQGFLLMGGDCAEAFNEFNVDHIRDSFRVMLQMALVLTFGSAMPIIKVGRMAGQFAKPRSEPDETRDGVTLPSYRGDIINNEDFTPESRRHKPGNMIDAYHQSAQTLNILRAFSTGGYADISRLHAWNLDFVEQTDEGSRYRTFATKVDESLRFMKAIGVDTSSpSFTKTDFFTAHECLLLPYEQSLTRKDSTTGRWYDCSAHMLWVGERTRQLDGAHLEFCRGVNNPLGVKISDKCTPEELLSIIDTMNPDNIPGRLTIVVRMGAEKLRKNLPGLIRAVQREGKSVLWISDPVHGNTYKTENGYKTRDFEKIRDELRAFFDVHDEMGSHPGGVHLEMTGEDVTECVGGLSSVTEASLGERYNTFCDPRLNGAQALELAFLIAERMRS 485
                  89**********************************************************************************************************************************************************************************************************************999****************************************************************************************************************************************************************************************************************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2323.95
//
Query:       MMETSP1061-20121228|18539_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 1033.91
//
Query:       MMETSP1061-20121228|18568_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.27    8.0  11.6       0.28    7.9   8.0    1.0  1  TIGR00998 8a0101: efflux pump membrane protein


Domain annotation for each model (and alignments):
>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   8.0   6.9e-05      0.28     136     199 ..       7      70 ..       2      72 .] 0.86

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 6.9e-05
    TIGR00998 136 sllkkgliskEeldrarkallsakaaLeaaiqeaeaAnqalvrveelkkqpavkeakerlkkAl 199
                   l ++ ++ +Ee  r ++a + +++a +  ++e+ea +  +   eelk++ av+e + rlk+A 
  MMETSP1061-20121228|18568_1   7 RLKEARAVAREEEARKKEARRLEEEAEDRRRKEQEARQARVREEEELKRKEAVREEARRLKEAR 70 
                  5788899*******************99999966655556777899***************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       377  (0.0919064); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 452.53
//
Query:       MMETSP1061-20121228|18578_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.42    6.5   3.7       0.42    6.5   2.5    1.0  1  TIGR00844 c_cpa1: sodium/hydrogen antiporter


Domain annotation for each model (and alignments):
>> TIGR00844  c_cpa1: sodium/hydrogen antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.5    0.0001      0.42     748     801 ..      32      85 ..      16      87 .] 0.70

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0001
    TIGR00844 748 kkdsvvsvdeekaiekpsrvperk.vqdlldsedesaddeaeseneedyedsddn 801
                  +k   vs+d+ +a      v++r+  +d l  ed  +dd+ + +n++d +d dd 
  MMETSP1061-20121228|18578_1  32 RKPRTVSLDDWVAARLL-VVSNRTfDRDPLTQEDINDDDDDDDDNDDDDDDDDDD 85 
                  44444555555555444.46676526789*****999999999999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 604.37
//
Query:       MMETSP1061-20121228|18582_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 963.52
//
Query:       MMETSP1061-20121228|18631_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.4    5.4  14.1        4.4    5.0   9.8    1.2  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA


Domain annotation for each model (and alignments):
>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   9.8    0.0011       4.4      39     122 ..      25     108 ..       9     116 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0011
    TIGR03927  39 ntellqgeetelek.elftpeeqkkikkkkkkekkeqeelkdqLfsenatesntvkktkkqLFsseyeqtssssesteeeetekt 122
                  +++ + +ee + ++ +  t e++ + +++++++++  +  +++  +  +++ ++v+++++q  s+e e++ ++ ++te+  t++t
  MMETSP1061-20121228|18631_1  25 TETQEPEEEPQETQvQEGTEESKDEEAETEHSDVAL-DNAASSALEATTESDTNVEEKEEQIASDETETANANATETETAATTET 108
                  444455556666664445666666667777777776.888888888999*********************999998886555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 694.16
//
Query:       MMETSP1061-20121228|18630_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0089   12.9   0.0      0.013   12.3   0.0    1.2  1  TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent


Domain annotation for each model (and alignments):
>> TIGR03565  alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   3.3e-06     0.013     208     281 ..      96     170 ..      88     188 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.3e-06
    TIGR03565 208 vrkkaakkGrkvkfGirlhvivreteeeaweaadrlisklddetiakaqkafarmdsvGqrrmaalh.gGkrdkl 281
                  v   a +k  + +f i+  ++v e++e   ++ +rli ++d +++++  +++a+   +  rr+++l+ +G+ d++
  MMETSP1061-20121228|18630_1  96 VAYFAVTKSPTQEFYIKSGLVVEEAQETQTQQVERLIGQIDLNDVKDPTDTLANCKEQATRRLSELDdNGNEDAI 170
                  555677777788999***************************************************856777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.25
# Mc/sec: 2655.62
//
Query:       MMETSP1061-20121228|18629_1  [L=580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-19   66.8  32.4    5.5e-18   63.0  22.4    2.2  1  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family


Domain annotation for each model (and alignments):
>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0  22.4   1.3e-21   5.5e-18       1     347 [.      60     390 ..      59     453 .. 0.74

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 1.3e-21
    TIGR00813   1 yflagrslgglvvaaslvasnisasqllGlpgeayasG...laiiflelaalvllivlgll..fvpvyikagvltmpeylekRFgkrilrilsvlililviflkisvdlfsgalllelvlGldlyl....sllllalitilYtviGGlkAvvwtDtlqavimivgvlilpvvafsevgglesvvekakqaaptvvsvddllkleldpltsdlpwgalvfGliivallywcldqvivqRllaaksaksakkgvlisgvlkllpmllavlpGliaralytdvdpalagavqqasdqaypllvvellp..pglaglflavllaAvlStlssilnsastvfteDlYkkiirkaaekekkivs 347
                  ++ a  s g + +a+s +as ++a+ + G   ++++     l +++++ a+++ +iv+ ll  +v+ +  +++ ++ ++ +kR+g+ +  + ++ + i+++f+++++ l+s + ++ l++G+d          +++++t+ Yt i Gl A ++tD +q++im + v++l++ + s            +q ++     ++ +  +  ++ + +++++lv+ ++ +      ++q+ +qR+ aa+s+ +++kg  ++ v++++ m++  ++G+ia  + +  dp    ++ + s  a+      llp  +g   ++l  + a + S+l+s+ n + ++f+ D  ++  + +      +v+
  MMETSP1061-20121228|18629_1  60 FLSARNSAGYWSIALSFFASGMGAWVVYGTTEMGANPAlswLGVLGYSGASAFPAIVVCLLgpYVKEKTGENAFSTTDFGRKRYGR-LMQLSISAVSIFYMFIYMVAELTSISNVFGLLTGIDKNSfgigVTCVIGIFTLSYTGIAGLPASIVTDRFQGLIMAFLVIVLTIAVCSFDE---------NQVTR-----EEFKLASSWTVEGLMAMVTLVIAILCA----ELFNQATWQRVWAAESVPALRKGFALGSVFVFMLMMFFGIMGMIA--YSK--DPVSYDTFEKFSFLAFFD---LLLPlgNGWHIIVLIFITALAASSLDSLQNGLNSIFYRDALRAGYNAHVT-ASVLVT 390
                  3446668899*********************999987777799**********9999999955667777777**************.555555666689***********************9765111134466899999************************9999987766544.........23333.....455666677777778887777777777....679********************9999888777766666666654..444..466665655445555555...5555558889999999999999*****************98865555544.233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 2944.37
//
Query:       MMETSP1061-20121228|18633_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   10.0  10.6      0.052    9.6   7.4    1.1  1  TIGR01069 mutS2: MutS2 family protein


Domain annotation for each model (and alignments):
>> TIGR01069  mutS2: MutS2 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   7.4   1.3e-05     0.052     515     583 ..     225     293 ..     200     344 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 1.3e-05
    TIGR01069 515 kviekleekekeleekaeelekllkeleklkkeleqkakelkererklkkelekeaqealkaakkevee 583
                    ++kl+e++ e ee+ ee+e+  ke ekl+k l++ka+   e++++ +ke+   ++ +lk  +k++ e
  MMETSP1061-20121228|18633_1 225 GDLAKLKEEVEEIEEEIEEIEEREKEEEKLEKMLSEKAEPAVEKQDEGQKEKAATQNSKLKRKRKNMLE 293
                  4589*********************************************************99987755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       426  (0.103852); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 1665.92
//
Query:       MMETSP1061-20121228|18632_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 1968.84
//
Query:       MMETSP1061-20121228|18638_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 245.98
//
Query:       MMETSP1061-20121228|18639_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 406.53
//
Query:       MMETSP1061-20121228|18635_1  [L=800]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 3641.08
//
Query:       MMETSP1061-20121228|18640_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-16   58.0  13.5    0.00012   19.7   0.2    5.0  4  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.8   2.3e-05     0.092      16      26 .]      17      27 ..      14      27 .. 0.93
   2 !   16.3   0.0   3.1e-07    0.0013      12      26 .]      38      52 ..      37      52 .. 0.90
   3 !   17.5   0.1   1.3e-07   0.00055       6      25 ..      57      75 ..      53      76 .. 0.85
   4 !   19.7   0.2   2.8e-08   0.00012       1      21 [.      77      96 ..      77      96 .. 0.99

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.3e-05
    TIGR02167 16 fdTsnVTnMss 26
                 +d+s+VT M++
  MMETSP1061-20121228|18640_1 17 WDVSSVTSMNN 27
                 *********86 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 3.1e-07
    TIGR02167 12 DlSnfdTsnVTnMss 26
                 +l++++T++VT M++
  MMETSP1061-20121228|18640_1 38 PLTGWNTGKVTSMDG 52
                 5899*********85 PP

  == domain 3    score: 17.5 bits;  conditional E-value: 1.3e-07
    TIGR02167  6 ssLtsLDlSnfdTsnVTnMs 25
                 s++++ ++  +d+s VTnMs
  MMETSP1061-20121228|18640_1 57 SAFNQ-NINHWDVSRVTNMS 75
                 56777.99***********8 PP

  == domain 4    score: 19.7 bits;  conditional E-value: 2.8e-08
    TIGR02167  1 MFsgCssLtsLDlSnfdTsnV 21
                 MF+g  ++++ +lS++d+snV
  MMETSP1061-20121228|18640_1 77 MFYGAYNFNT-PLSSWDVSNV 96
                 **********.*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1194.50
//
Query:       MMETSP1061-20121228|18637_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-16   56.8   0.0    1.6e-14   51.7   0.0    2.8  2  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    2.3e-07   27.8   0.0    0.00065   16.4   0.0    3.3  3  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    2.5e-05   20.7   0.0    5.7e-05   19.5   0.0    1.5  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit


Domain annotation for each model (and alignments):
>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0      0.16   2.1e+02     190     221 ..      53      94 ..      38     135 .. 0.69
   2 !   51.7   0.0   1.2e-17   1.6e-14       2     304 ..     156     513 ..     155     522 .. 0.71

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.16
    TIGR03169 190 sakvrklvkrllakrgievlekeevtevede..........a 221
                   ++++k++++ l++r+++v ++ + + v  +          +
  MMETSP1061-20121228|18637_1  53 TKEIEKALRQELTERNLKVEDEGKYAVVDGSgmdtdkekptT 94 
                  567788888888888888888877777776633333333333 PP

  == domain 2    score: 51.7 bits;  conditional E-value: 1.2e-17
    TIGR03169   2 LvLvGgGHahalvLkklamkpkagvrvtlispssttlYSGMlPgliaghysedeiridlrrlaekagaelvedeatgldleerkvlla...........ereeisydvlsldvGsttalsevegaadkavpvKPleellaaweellekaka........seetk..slavvGgGaagvElalalrkrlkkrglkaevsla.........seakllqalsakvrklvkrllakrgievlekeevtevede...................alllaegetleadavllatgakapaw.......Laesgl..sldedGflavkktLqsl.shpevFaaGDcavik...eaprpkaGVyAVrqakiLaa 304
                  +v +G G   a  Lk +     ++++vt+isp+++ +++ Ml g   g+ +++ i   +r++ +   ae+ e+ at++d e++ ++++           +  ++syd l++ +G++t++  + g +++    K +e++ + + ++ ++ ++        +e+ +  ++av+G+G  g+Ela  lr  +++ g k   +l          +++++l+ + +++++ + +++++ ++e  +       + e                   ++ll++g+ ++    ++a g  + ++       L e +   +  ++G++a+++ ++ + s+ +++a GDc   +   + p+p+ G  A +q+++La+
  MMETSP1061-20121228|18637_1 156 IVVLGTGWGGAAFLKGID---TNRYDVTVISPRNYFVFTPMLAGASVGTVDYRSITQPIREINR--DAEFLEGLATDVDHENKILTCEsvvcdgnsceiNDFSVSYDRLVVTIGAQTNTFGIPGVREYCNFLKQVEDARRIRTAIVNCFERanlpgltdEERINnlTFAVIGAGPTGIELAAELRDFVEQDGPKYYPKLLkyvrikvieASSTVLAPFDKSLQEEAIKRMNR-NVEFNDPDIYRLLP-EkfklvellldsavkevtakQILLNDGNAIDYGLCVWAGGIGPLPLtlqivesLGEKQAteQNVARGRIATDAWMRAKgSNGSILAFGDCSCTTtgpDGPLPATGQVAAQQGEFLAK 513
                  788999999999999985...46799***********************************976..579***************99983333332222234579*******************999999999999998888877776654311111111333333699***************9999999886633333222222255766667777776666666555543.22222222222222.13455555555555555555********************99987632221112222221122357**********9834679*******98872225689*************997 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.019        26     147     184 ..     151     188 ..     142     203 .. 0.86
   2 !   16.4   0.0   4.8e-07   0.00065      92     167 ..     244     333 ..     219     340 .. 0.68
   3 !    5.5   0.0   0.00099       1.4     177     283 ..     376     487 ..     350     492 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.019
    TIGR03385 147 kkvekvvviGgGyiglemvealkergkevtlierseki 184
                  +k ek+vv+G+G+ g   +  + + + +vt+i   ++ 
  MMETSP1061-20121228|18637_1 151 EKREKIVVLGTGWGGAAFLKGIDTNRYDVTVISPRNYF 188
                  68899*************************99876664 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 4.8e-07
    TIGR03385  92 knnktnekyeesyDkLilstGAkpkileiegieldavftlrnledaeaikkyl.............dkkkvekv..vviGgGyiglemvea 167
                   n+ + + +  syD L+++ GA++++  i+g+  + +  l+++eda +i++ +             d+++++++  +viG+G  g+e++  
  MMETSP1061-20121228|18637_1 244 GNSCEINDFSVSYDRLVVTIGAQTNTFGIPGVR-EYCNFLKQVEDARRIRTAIvncferanlpgltDEERINNLtfAVIGAGPTGIELAAE 333
                  4666778999*********************64.667779*********998733333222232223445554322467777777776655 PP

  == domain 3    score: 5.5 bits;  conditional E-value: 0.00099
    TIGR03385 177 liersekilnkllDeeiakiveeelekkeielrlneevksvegeekvevltsgkvyqaDlvilavGvkP...nselikssqlklgk.....kGaikvnekfqt..sveniyaiGDva 283
                   i+r ++   +  D +i + + e+++   +el l+  vk+v  +++   l++g+ +++ l + a G+ P     ++++s++ k  +     +G i ++  ++   s   i a GD+ 
  MMETSP1061-20121228|18637_1 376 AIKRMNRN-VEFNDPDIYRLLPEKFKL--VELLLDSAVKEVTAKQI--LLNDGNAIDYGLCVWAGGIGPlplTLQIVESLGEKQATeqnvaRGRIATDAWMRAkgSNGSILAFGDCS 487
                  55555444.477789999999999865..69***********9999..7******************99555578888765543211122379999998887622555699999986 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   4.1e-08   5.7e-05      94     279 ..     253     488 ..     225     508 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 4.1e-08
    TIGR02374  94 tlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaa.akrtkka................aviGgGLLGLeaaraLknl....G..........ldvsvielapllma...kqlDqtagrlLqrelekkG..ltvll.ek.etveivkes...vekaerlrfkDGssleadlvvlaaGirP.......rdeLaaeaGlkvnd.rrGiivndsmqt..sdPdiyavGecae 279
                   +syD+L++  G+ +    ipG  ++ +   +++eD   +++a  + +++a                aviG+G  G+e a  L+++    G          + ++vie +++++a   k l + a + ++r++e +   +  ll ek + ve   +s     +a+++ ++DG+ ++ +l v a Gi P        + L+ +   + n  r+ i ++ +m++  s+  i a G+c+ 
  MMETSP1061-20121228|18637_1 253 SVSYDRLVVTIGAQTNTFGIPGV-REYCNFLKQVEDARRIRTAiVNCFERAnlpgltdeerinnltfAVIGAGPTGIELAAELRDFveqdGpkyypkllkyVRIKVIEASSTVLApfdKSLQEEAIKRMNRNVEFNDpdIYRLLpEKfKLVELLLDSavkEVTAKQILLNDGNAIDYGLCVWAGGIGPlpltlqiVESLGEKQATEQNVaRGRIATDAWMRAkgSNGSILAFGDCSC 488
                  689*******************8.5789999******988755155667778889*****************************984444244444444446799*****9997544499**********9998654115444455525566665653212357899*******************994443322245665544444331666888889976336788999999975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                      152  (0.0370551); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.32
# Mc/sec: 2631.53
//
Query:       MMETSP1061-20121228|18636_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 2365.24
//
Query:       MMETSP1061-20121228|18642_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1895.84
//
Query:       MMETSP1061-20121228|18641_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 1579.74
//
Query:       MMETSP1061-20121228|18643_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-53  177.7   0.0    6.4e-53  177.2   0.0    1.2  1  TIGR00070 hisG: ATP phosphoribosyltransferase
    6.9e-25   85.0   0.3    1.4e-24   84.0   0.2    1.5  1  TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00070  hisG: ATP phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.2   0.0   3.1e-56   6.4e-53       1     182 [.      12     196 ..      12     197 .. 0.97

  Alignments for each domain:
  == domain 1    score: 177.2 bits;  conditional E-value: 3.1e-56
    TIGR00070   1 lriAlp.KGrleeetlkllekaglklskkeerkliasaedeevevlllrakdiptyvekgaadlGitGkDlleEseadvvelldlgfgkcklvlAvpeesdvesledlkegkriATkypnltreyl....ekkgvkveivkleGavElapllgladaIvDivetGttLrengLkiieeilessarli 182
                  l++A+p KGrl e+++++l+ ag++++++  r  +a     ++++++l+a+di+++v +g++dlGitG+D+++E++ +v  +ldlgfgkc+l++ +p   ++e++e+l+ gkriAT++pnlt++y+    ek gv+ +i  ++G+vE+a+ lglada+vD+vetGtt+r+ gL+++ +il+++a+l+
  MMETSP1061-20121228|18643_1  12 LKFAIPkKGRLHEKVVEMLKGAGIEFRREP-RLDVALCVGLPITLIFLSASDIAKFVGEGNVDLGITGQDMVQENGVEVDGILDLGFGKCRLSVQAPVVDKIENVEALA-GKRIATSFPNLTKKYFdpidEKLGVSTSIKYVSGSVEAACGLGLADAVVDLVETGTTMRAAGLEVVHDILSTQATLF 196
                  799**************************9.999999999*********************************************************************.9***************555457889*************************************************996 PP

>> TIGR03455  HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.2     7e-28   1.4e-24       7      99 ..     201     293 ..     197     294 .. 0.95

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 7e-28
    TIGR03455   7 dekkekieelltrlegvlearkkvllklnvpkdsLdeilavlPglegPTvskladedwvaVeavvdekevneliekLkevGAedIlvlpiekv 99 
                  +e+k++i++l +rleg ++a k+v++++nv kd ++e+++++Pg ++PT+++l+  +  +V+a+v +kevn+ ++ L+ vGA+dIlvl+++++
  MMETSP1061-20121228|18643_1 201 TEHKDLINKLQKRLEGYITAIKYVMIMYNVSKDLMAEAIKITPGKKSPTITNLECGSTKSVSALVLKKEVNDKMDALHDVGATDILVLELKNS 293
                  46799*************************************************99*********************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 1497.57
//
Query:       MMETSP1061-20121228|18644_1  [L=698]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-59  198.7   4.2    2.7e-59  198.7   2.9    1.9  2  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
    1.7e-42  143.5   1.7    1.7e-42  143.5   1.2    2.6  3  TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
    5.3e-38  129.0   2.7    1.3e-37  127.7   1.9    1.6  1  TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS
    1.1e-27   95.1   1.4    1.1e-27   95.1   1.0    3.5  4  TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
    1.1e-27   95.0   1.8    1.1e-27   95.0   1.2    3.1  4  TIGR02980 SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
    5.5e-26   89.0   0.8    1.4e-25   87.7   0.6    1.8  1  TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
    6.7e-25   86.1   3.6    4.2e-23   80.2   2.2    2.6  2  TIGR02885 spore_sigF: RNA polymerase sigma-F factor
    2.2e-24   84.4   1.5    2.2e-24   84.4   1.1    2.1  3  TIGR02392 rpoH_proteo: alternative sigma factor RpoH
    4.8e-18   63.4   1.8    9.3e-18   62.4   1.2    1.4  1  TIGR02941 Sigma_B: RNA polymerase sigma-B factor
    5.7e-18   63.1   1.0    1.6e-17   61.7   0.7    1.8  1  TIGR02850 spore_sigG: RNA polymerase sigma-G factor
    1.8e-13   48.4   2.2    1.7e-08   32.1   0.0    3.1  3  TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor
    2.9e-10   37.8   7.2    6.2e-05   20.4   0.0    3.6  4  TIGR02835 spore_sigmaE: RNA polymerase sigma-E factor
      6e-06   24.1   0.5    0.00043   18.1   0.1    2.8  2  TIGR02952 Sig70_famx2: RNA polymerase sigma-70 factor, TIGR02952 family
    1.3e-05   22.7   2.9       0.04   11.3   0.0    3.1  3  TIGR02984 Sig-70_plancto1: RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1
  ------ inclusion threshold ------
       0.01   13.6   0.1      0.052   11.3   0.0    2.2  2  TIGR02989 Sig-70_gvs1: RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family


Domain annotation for each model (and alignments):
>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       2.1   5.7e+02      27      34 ..     165     172 ..     121     226 .. 0.49
   2 !  198.7   2.9     1e-61   2.7e-59       1     298 []     363     682 ..     363     682 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.1
    TIGR02997  27 qvqellal 34 
                  ++++l++l
  MMETSP1061-20121228|18644_1 165 EIKSLKKL 172
                  12222222 PP

  == domain 2    score: 198.7 bits;  conditional E-value: 1e-61
    TIGR02997   1 Dlvrlylqeigrvplltaeeeielarqvqellaleekkeeleeqlekepskeelakav.dlsekelkkalkqgrrAkeklikanLRLvvsvAkkYqkrgle....llDLiqeGslGleravekFdptkGykfstyAyWWirqgitraiaeqsrtiRlPiHiteklnklkkvqrelsqklgrepseaelaealeleveqvrellka.arkpvsLdakvGkeed........telgdlled.eeeePeeeveeellkedleellae.LkererevlrlrfGledeee......ltlaeigeelnlsrervrqiekkalkklr 298
                  D++ ++ +ei  v+ +t++eei l+++ qe ++l++  + l ++le+ep+++e+ +a+ + +++++ +++++g +Ak++l+++nLR+v  v   Y k+gl+      DL+qeG + l ra+ekFdptkG++fstyA++Wir ++ r    qsr+i +P  + e+ +++   ++el+++l+r p+++e++eal++++ q++++ +a a++ vsLd+++ ++++         +l+ ++++  ++  +e+++   l+edl ++l++ L+++e ++l+lrfG++de +      +t++e+g+ ++l+ ++vr+i  +alkklr
  MMETSP1061-20121228|18644_1 363 DSLVQFANEIHDVDRITPKEEIMLGEKTQEAVRLQRIYDGLVTKLEREPTDDEWCAAAgKFNMESIAQTIEEGLEAKNRLVTSNLRMVQGVVNVYIKNGLKgqynAGDLMQEGIVALIRAAEKFDPTKGFRFSTYAMYWIRAAVKRDQLYQSRVIQVPQRLHENSKRIEVCRKELTETLDRPPTVSEISEALGMTKAQIDRCDTAiAQRIVSLDQQIVNKNKpmvttrgvESLHSIISSqVDDDETEKLDLIHLREDLLKALSSnLTKEEASILTLRFGMDDEYAsskkagRTISEVGDIMGLKPDKVRRIILRALKKLR 682
                  67778999**********************************************77662678999********************************9996222267*********************************************************************************************99776156789****99554432332222246899999955667789999999****99999755****************98652222226899************************8 PP

>> TIGR02393  RpoD_Cterm: RNA polymerase sigma factor RpoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.3       1.4   3.7e+02     197     233 ..     145     181 ..     132     190 .. 0.76
   2 ?   -1.3   0.0       1.1     3e+02      88     119 ..     395     427 ..     374     433 .. 0.79
   3 !  143.5   1.2   6.1e-45   1.7e-42       1     226 [.     438     683 ..     438     689 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.4
    TIGR02393 197 ktleevgkefnvtrerirqieskalrklrhpskskkl 233
                  + +  v+   +++  r + +e k l+kl +++++++ 
  MMETSP1061-20121228|18644_1 145 RKIATVAAVTSTADARSKTLEIKSLKKLTDKANDTRT 181
                  4556677777777889999999999999887766554 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.1
    TIGR02393  88 klakaerkllqelgrepteeelaeklg.leaek 119
                  +l+++   l+ +l+rept++e + + g +++e 
  MMETSP1061-20121228|18644_1 395 RLQRIYDGLVTKLEREPTDDEWCAAAGkFNMES 427
                  7888999999********999766655455555 PP

  == domain 3    score: 143.5 bits;  conditional E-value: 6.1e-45
    TIGR02393   1 akkklvesnlrlvvsiakkylnrGlsfl....dliqeGniGllkavekfdykkgykfstyatWWirqaitraiadqartiriPvhlvetinklakaerkllqelgrepteeelaeklgleaekvkeik.klakepvslekpigeeed........selgdfiedeevespedaaakellkeeleevle.tlsereekvlklryGledg......kektleevgkefnvtrerirqieskalrklrh 226
                  ak++lv+snlr+v  +   y++ Gl+ +    dl+qeG + l++a ekfd +kg++fstya +Wir a+ r    q+r i++P  l e+ ++++ ++++l++ l+r pt  e++e+lg+++ ++ +    +a+  vsl+++i +++          +l+  i+++  ++ +++     l+e+l + l+ +l+++e+++l lr+G++d+        +t+ evg  +++  +++r+i  +al+klr 
  MMETSP1061-20121228|18644_1 438 AKNRLVTSNLRMVQGVVNVYIKNGLKGQynagDLMQEGIVALIRAAEKFDPTKGFRFSTYAMYWIRAAVKRDQLYQSRVIQVPQRLHENSKRIEVCRKELTETLDRPPTVSEISEALGMTKAQIDRCDtAIAQRIVSLDQQIVNKNKpmvttrgvESLHSIISSQVDDDETEKLDLIHLREDLLKALSsNLTKEEASILTLRFGMDDEyasskkAGRTISEVGDIMGLKPDKVRRIILRALKKLRI 683
                  89***********************7433344********************************************************************************************9986268999*******998876222211112455666666666667777778899999999998*****************99887765568***************************96 PP

>> TIGR02394  rpoS_proteo: RNA polymerase sigma factor RpoS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  127.7   1.9   4.8e-40   1.3e-37      44     272 ..     435     683 ..     422     690 .. 0.82

  Alignments for each domain:
  == domain 1    score: 127.7 bits;  conditional E-value: 4.8e-40
    TIGR02394  44 dvearkkmiesnlrlvvkiakkyvnrGlp....lldlieeGnlGllkavekfdPerGfrfstyatWWirqtieraimnqartirlPvhvvkelnvvlraarklekkldreasveevaelldkpvedvskl.lklnekiasldapldeds........ekslldlladekseePeelvqnedlkeli.eallaelnekerevlarrfGlreyek......atleevakelgltrervrqiqvealkklkr 272
                    ea+++++ snlr+v  +   y+ +Gl+      dl++eG + l++a ekfdP++Gfrfstya +Wir ++ r    q+r+i++P  +  +   +  ++++l++ ldr+++v e++e+l+ +  ++ +   +++++i+sld+ + + +         +sl  +++ + +++ +e+++  +l+e + +al ++l+++e  +l+ rfG+ +  +       t+ ev++ +gl  ++vr+i + alkkl+ 
  MMETSP1061-20121228|18644_1 435 GLEAKNRLVTSNLRMVQGVVNVYIKNGLKgqynAGDLMQEGIVALIRAAEKFDPTKGFRFSTYAMYWIRAAVKRDQLYQSRVIQVPQRLHENSKRIEVCRKELTETLDRPPTVSEISEALGMTKAQIDRCdTAIAQRIVSLDQQIVNKNkpmvttrgVESLHSIISSQVDDDETEKLDLIHLREDLlKALSSNLTKEEASILTLRFGMDDEYAsskkagRTISEVGDIMGLKPDKVRRIILRALKKLRI 683
                  479************************96333367*****************************************************99999999999********************99999998876456777888888766433211111112578888888888888888888777776550555579***************8753312222269**************************96 PP

>> TIGR02479  FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.8         1   2.8e+02      80     151 ..     123     194 ..      85     220 .. 0.48
   2 ?   -0.6   0.2      0.73     2e+02      91     140 ..     305     353 ..     286     395 .. 0.54
   3 ?   -0.3   0.0      0.57   1.6e+02      80     119 ..     391     431 ..     381     440 .. 0.74
   4 !   95.1   1.0     4e-30   1.1e-27       3     221 ..     444     683 ..     442     686 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 1
    TIGR02479  80 kkakkleeaieelearlgrepteeeiaeelgldlkevrkaleeinaeslvsldellesedee..lsladliedk 151
                  +++k+++ a+   + + + ++te +ia+   ++      + + ++ +sl  l ++ ++   +   +l+d+i + 
  MMETSP1061-20121228|18644_1 123 ETTKEIRPATTIAK-KKKPRATERKIATVAAVTST-ADARSKTLEIKSLKKLTDKANDTRTKsqPKLKDVIVAA 194
                  34444444433322.33333444444443333221.12222223333344443333333332233344444444 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.73
    TIGR02479  91 elearlgrepteeeiaeelgldlkevrkaleeinaeslvsldellesede 140
                  ++   ++r+ t+ +ia + g++  e +  + e + +s + ++  + s+++
  MMETSP1061-20121228|18644_1 305 TMPGFHQRRNTDRQIAYKAGIKKAEGHAGM-EFKETSTAKMKRRQTSGQS 353
                  555556677777777777776666655544.3344444444443333333 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.57
    TIGR02479  80 kkakkleeaieelearlgrepteeeiaee.lgldlkevrka 119
                  ++a +l++ ++ l  +l+rept+ e  ++  + +++ + ++
  MMETSP1061-20121228|18644_1 391 QEAVRLQRIYDGLVTKLEREPTDDEWCAAaGKFNMESIAQT 431
                  67778899999999********9996544044566666555 PP

  == domain 4    score: 95.1 bits;  conditional E-value: 4e-30
    TIGR02479   3 kkylplVkrvae.rlkvklpssveleDliqaGmlgLldaierydeekgvkFetyavlRirGai.lDeLRkldw..vprslrkkakkleeaieelearlgrepteeeiaeelgldlkevrkaleeinaeslvsldellesedee.......lsladliedkksedpeeelereelkeklaeaie.kLsereklvlsLyY..........eeeLnlkEigevLelsesRvsQlhskalkkLra 221
                  ++ l +V+ v++  +k +l  + + +Dl+q G+++L+ a+e++d++kg++F+tya+++ir a+  D+L +  +  vp++l++++k++e  ++el+++l r pt +ei+e+lg++  ++ +    + a+++vsld+ + ++++        +sl+++i+++ ++d +e+l+  +l+e l +a+  +L++ e  +l+L +          + + ++ E+g++++l   +v  +  +alkkLr 
  MMETSP1061-20121228|18644_1 444 TSNLRMVQGVVNvYIKNGLKGQYNAGDLMQEGIVALIRAAEKFDPTKGFRFSTYAMYWIRAAVkRDQLYQSRViqVPQRLHENSKRIEVCRKELTETLDRPPTVSEISEALGMTKAQIDRCD-TAIAQRIVSLDQQIVNKNKPmvttrgvESLHSIISSQVDDDETEKLDLIHLREDLLKALSsNLTKEEASILTLRFgmddeyasskKAGRTISEVGDIMGLKPDKVRRIILRALKKLRI 683
                  556667777665258899999*****************************************95599987665338******************************************9988.667899******9999888789999998999************************9999636***********9944433333333456889***********************995 PP

>> TIGR02980  SigBFG: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       4.5   1.2e+03     135     156 ..     169     191 ..     125     218 .. 0.51
   2 ?   -1.1   0.0      0.98   2.7e+02     115     146 ..     270     302 ..     240     377 .. 0.60
   3 ?    0.6   0.0       0.3        81      89     128 ..     393     433 ..     383     439 .. 0.78
   4 !   95.0   1.2   4.2e-30   1.1e-27       3     224 ..     437     683 ..     436     686 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 4.5
    TIGR02980 135 assldasve.dddgdeialldtl 156
                   + l ++++   ++++ +l d +
  MMETSP1061-20121228|18644_1 169 LKKLTDKANdTRTKSQPKLKDVI 191
                  22222222212333444444444 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.98
    TIGR02980 115 elevseeevvealeaaksysassldasve.ddd 146
                  +le s+ + +   + ++++++ sl++++  +++
  MMETSP1061-20121228|18644_1 270 ALEASSTDYALESTNTNTFKPRSLHNTMVfNSK 302
                  455555555544555556666666665552222 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.3
    TIGR02980  89 aakikkateeLtqklgrePtveei.aeelevseeevveale 128
                  a+++++  + L +kl+rePt  e  a++ + + e++++++e
  MMETSP1061-20121228|18644_1 393 AVRLQRIYDGLVTKLEREPTDDEWcAAAGKFNMESIAQTIE 433
                  57899999************999625555677777777766 PP

  == domain 4    score: 95.0 bits;  conditional E-value: 4.2e-30
    TIGR02980   3 eareklvelnlkLvesiarrfrsrg...ee.leDlvQvgtiGLlkaidrfdlsrgvkFstyavPtivGEikrflRDktwavrvpRrlkelaakikkateeLtqklgrePtveeiaeelevseeevvealeaaksysassldasvedddgdeial..ldtlge......edeeleev....eeklalkellakLdererrilllrffed..........ktQseiaeelGiSQmqvSRlekralkklre 224
                  ea+++lv+ nl++v+ +++ + + g   +  + Dl+Q g + L++a ++fd+++g +Fstya+  i   +kr    +++ ++vp rl+e +++i+  ++eLt++l+r Ptv+ei+e+l++++ ++ ++ +a  + +  sld+++ ++++  ++   +++l +      +d+e+e++     ++ +lk l ++L + e +il+lrf  d          +t se+++ +G+   +v R+  ralkklr 
  MMETSP1061-20121228|18644_1 437 EAKNRLVTSNLRMVQGVVNVYIKNGlkgQYnAGDLMQEGIVALIRAAEKFDPTKGFRFSTYAMYWIRAAVKRDQLYQSRVIQVPQRLHENSKRIEVCRKELTETLDRPPTVSEISEALGMTKAQIDRCDTAIAQ-RIVSLDQQIVNKNKPMVTTrgVESLHSiissqvDDDETEKLdlihLREDLLKALSSNLTKEEASILTLRFGMDdeyasskkagRTISEVGDIMGLKPDKVRRIILRALKKLRI 683
                  6899*****************886633333489***************************************9999999*************************************************999999.9*******996554433221123332222234445555544222335667777778999***********64322222222336889************************95 PP

>> TIGR02937  sigma70-ECF: RNA polymerase sigma factor, sigma-70 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.6     5e-28   1.4e-25       2     162 ..     438     682 ..     437     685 .. 0.78

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 5e-28
    TIGR02937   2 aleqliesylplvykvarkylgds....ldaeDlvqegflglikaldkfdpessfk..tyaysvirnsiidalrrkrelkvtneveiske................keeeeledeed............................................................rpeeqeeaeelrerleqale.kLperereilklry..........leglslkeiAeelgisqetvsrilkraikkLk 162
                  a ++l++s+l++v  v++ y +++    ++a+Dl+qeg+++li+a +kfdp+++f+  tya+++ir ++++ +  +++  +++++  ++                           +                                                            +++e+++  +lre+l +al+ +L+++e  il lr+           +g + +e+++++g+++  v+ri+ ra+kkL+
  MMETSP1061-20121228|18644_1 438 AKNRLVTSNLRMVQGVVNVYIKNGlkgqYNAGDLMQEGIVALIRAAEKFDPTKGFRfsTYAMYWIRAAVKRDQLYQSRVIQVPQRLHENSkrievcrkeltetldrP---------PtvseisealgmtkaqidrcdtaiaqrivsldqqivnknkpmvttrgveslhsiissqvddDETEKLDLIHLREDLLKALSsNLTKEEASILTLRFgmddeyasskKAGRTISEVGDIMGLKPDKVRRIILRALKKLR 682
                  7789***************98888888899**********************888888*********9999766444333333333333367888885555555550.........334444445555555555555666666666666666666677777777777777777778899*********************************777776666666*****************************8 PP

>> TIGR02885  spore_sigF: RNA polymerase sigma-F factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.024       6.4      96     135 ..     393     433 ..     383     436 .. 0.79
   2 !   80.2   2.2   1.5e-25   4.2e-23       7     228 ..     433     682 ..     428     685 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.024
    TIGR02885  96 akkirkekeelakklerePtieelaea.lglekeevvaale 135
                  a ++++  + l++klerePt +e  +a  +++ e +++++e
  MMETSP1061-20121228|18644_1 393 AVRLQRIYDGLVTKLEREPTDDEWCAAaGKFNMESIAQTIE 433
                  678889999**************765505678888887766 PP

  == domain 2    score: 80.2 bits;  conditional E-value: 1.5e-25
    TIGR02885   7 egdkeardklveenlrlvssivkrflnrG....yeledlfqiGciGlvkaidkfdlsydvkfstyavPliiGeikr.flrddgiikvsrslkelakkirkekeelakklerePtieelaealglekeevvaales.akslqslydtvheddgdpil.....lldki.ade.geeesdllekialkeal.....kkldererqiillryfkd..........ktqtevakilGisqvqvsrlekkvlkklk 228
                  e   ea+++lv +nlr+v+ +v+ ++++G    y+  dl q G + l++a +kfd     +fstya+  i   +kr  l    +i+v + l e +k+i   ++el++ l+r Pt+ e++ealg++k ++     + a+ + sl + + +++   ++      l  i + +  ++e++ l+ i l+e l     ++l++ e  i+ lr+  d          +t +ev +i+G+   +v r+  ++lkkl+
  MMETSP1061-20121228|18644_1 433 EEGLEAKNRLVTSNLRMVQGVVNVYIKNGlkgqYNAGDLMQEGIVALIRAAEKFDPTKGFRFSTYAMYWIRAAVKRdQLYQSRVIQVPQRLHENSKRIEVCRKELTETLDRPPTVSEISEALGMTKAQIDRCDTAiAQRIVSLDQQIVNKNKPMVTtrgveSLHSIiSSQvDDDETEKLDLIHLREDLlkalsSNLTKEEASILTLRFGMDdeyasskkagRTISEVGDIMGLKPDKVRRIILRALKKLR 682
                  55679********************999866678999**************************************956999***********************************************9887655367789999999888776654222223444444441456678899999988653333356899999******9655333333333458899********************9998 PP

>> TIGR02392  rpoH_proteo: alternative sigma factor RpoH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3       2.6   7.2e+02     242     264 ..     150     172 ..      79     228 .. 0.66
   2 ?   -2.3   0.0       2.1   5.7e+02       2      32 ..     364     394 ..     363     405 .. 0.85
   3 !   84.4   1.1   8.1e-27   2.2e-24      31     267 ..     433     684 ..     424     687 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.6
    TIGR02392 242 laaeygvsaeRvRqiekkalkkl 264
                  +aa  + +  R + +e k+lkkl
  MMETSP1061-20121228|18644_1 150 VAAVTSTADARSKTLEIKSLKKL 172
                  33333333333334444444433 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.1
    TIGR02392   2 sleaYiravnklplLeaeeekelakrlreek 32 
                  sl ++ ++++ ++ ++++ee +l ++ +e  
  MMETSP1061-20121228|18644_1 364 SLVQFANEIHDVDRITPKEEIMLGEKTQEAV 394
                  67889999***************99998865 PP

  == domain 3    score: 84.4 bits;  conditional E-value: 8.1e-27
    TIGR02392  31 ekdleaakkLvlshLrlvvkiargYrgYGLp....qadliqegniGLmkavkrfdPergvRlvsfavhWikaeiheyilrnWrlvkvattkaqr.kLFFnlrkakkklkgalseeeveavaeeLgvseeevlemesRlsgkDlsleaeseededese..elieyLadkeseaeeeleeeeeee....kqkeklkeal.ekldersrriieaRwlede........kltLeelaaeygvsaeRvRqiekkalkklkaa 267
                  e+ lea ++Lv+s+Lr+v  + + Y   GL+     +dl+qeg + L++a  +fdP +g+R++++a++Wi+a+++   l + r+++v        k     rk+ ++  +  ++  v++++e Lg++++++   ++ ++ + +sl++++ ++++     + +e L+     ++++++++e+e+    + +e l +al ++l + + +i++ R   d+          t++e+ + +g+  ++vR i  +alkkl+  
  MMETSP1061-20121228|18644_1 433 EEGLEAKNRLVTSNLRMVQGVVNVYIKNGLKgqynAGDLMQEGIVALIRAAEKFDPTKGFRFSTYAMYWIRAAVKRDQLYQSRVIQVPQRLHENsKRIEVCRKELTE--TLDRPPTVSEISEALGMTKAQIDRCDTAIAQRIVSLDQQIVNKNKPMVttRGVESLHS---IISSQVDDDETEKldliHLREDLLKALsSNLTKEEASILTLRFGMDDeyasskkaGRTISEVGDIMGLKPDKVRRIILRALKKLRIS 684
                  56799************************97433368**************************************************87544330333333333333..3346889********************************9997655332233444444...44444444444441111445566666625799**********8765435544444579**************************976 PP

>> TIGR02941  Sigma_B: RNA polymerase sigma-B factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   1.2   3.4e-20   9.3e-18      27     250 ..     435     682 ..     418     686 .. 0.77

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 3.4e-20
    TIGR02941  27 neeaqeklvkkykdlvesiaykyskg....saihedlvqvGmvGllgairrydlsigkafeafaiptiiGeikrylrdktwsvhvprrikelGpkikkavdeltaelqrspkiaeiadrlgvseeevleimemgqsykalsvddkieadsd....GstvalldlvGesedgydqtekr...lvlekilpils....erekeiiecif...ienlsqk.......etGerlGisqmhvsrlkrraikklk 250
                    ea+++lv+    +v+ +   y k+    +    dl+q G+v l+ a +++d++ g +f ++a+  i   +kr    ++  + vp+r+ e   +i  + +elt+ l+r p+++ei++ lg+++ ++ +  +   + +++s+d++i +++        v  l+++  s+ + d+tek     + e++l+ ls    + e +i+   f    e  s k       e G+ +G+   +v r+  ra+kkl+
  MMETSP1061-20121228|18644_1 435 GLEAKNRLVTSNLRMVQGVVNVYIKNglkgQYNAGDLMQEGIVALIRAAEKFDPTKGFRFSTYAMYWIRAAVKRDQLYQSRVIQVPQRLHENSKRIEVCRKELTETLDRPPTVSEISEALGMTKAQI-DRCDTAIAQRIVSLDQQIVNKNKpmvtTRGVESLHSIISSQVDDDETEKLdliHLREDLLKALSsnltKEEASILTLRFgmdDEYASSKkagrtisEVGDIMGLKPDKVRRIILRALKKLR 682
                  45788899988888888888888765111166788***************************************9999999*****************************************99875.78899999*********98876511113346667777777767777777421123467777665222167899999988433233444413333336788899999999999999999998 PP

>> TIGR02850  spore_sigG: RNA polymerase sigma-G factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.7   0.7   5.7e-20   1.6e-17      28     251 ..     432     682 ..     420     685 .. 0.75

  Alignments for each domain:
  == domain 1    score: 61.7 bits;  conditional E-value: 5.7e-20
    TIGR02850  28 lkegdkeareklingnlrlvlsviqrfnn...rgey.vddlfqvgcigllksidnfdlsqnvkfstyavpmiigeirr.ylrdnnpirvsrslrdiaykalqvrdklvskkskeptvseiakelevpkeevvfaldai.qdpvslfepiyndggdpiy..........vmdqisdeknkdeswleeialkeal.....krlnereklilklrf.....f.....egktqmevaeeigisqaqvsrlekaalkqlk 251
                  ++e   ea+++l+++nlr+v  v++ + +   +g+y + dl+q g + l+++ ++fd  +  +fstya+  i   ++r  l +   i+v + l + + +    r++l +  ++ ptvsei++ l+++k ++  +  ai q  vsl + i n +   +           +  q++d++    + l+ i l+e l     ++l++ e  il+lrf     +      g+t  ev + +g+   +v r+   alk+l+
  MMETSP1061-20121228|18644_1 432 IEE-GLEAKNRLVTSNLRMVQGVVNVYIKnglKGQYnAGDLMQEGIVALIRAAEKFDPTKGFRFSTYAMYWIRAAVKRdQLYQSRVIQVPQRLHENSKRIEVCRKELTETLDRPPTVSEISEALGMTKAQIDRCDTAIaQRIVSLDQQIVNKNKPMVTtrgveslhsiISSQVDDDET---EKLDLIHLREDLlkalsSNLTKEEASILTLRFgmddeYasskkAGRTISEVGDIMGLKPDKVRRIILRALKKLR 682
                  444.4789***************9988651235565378**********************************99988469999*************999999****************************99988884566888888877654433211111100113344544432...3455566655541111156889999******9655552333335899999999999999999999999999987 PP

>> TIGR02846  spore_sigmaK: RNA polymerase sigma-K factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   6.4e-11   1.7e-08      46     109 ..     435     502 ..     423     516 .. 0.85
   2 ?   -1.9   0.0       1.6   4.3e+02     170     216 ..     518     566 ..     501     574 .. 0.72
   3 !   14.4   0.2   1.7e-05    0.0046     153     222 ..     605     681 ..     583     685 .. 0.70

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 6.4e-11
    TIGR02846  46 deearnvliernlrlvahivkkfentg....kdvddlisiGtiGlikaidsfdtekGtklatyaarci 109
                    ea+n+l+  nlr+v  +v  + ++g     +  dl+  G + li+a + fd+ kG +++tya   i
  MMETSP1061-20121228|18644_1 435 GLEAKNRLVTSNLRMVQGVVNVYIKNGlkgqYNAGDLMQEGIVALIRAAEKFDPTKGFRFSTYAMYWI 502
                  368********************987632224689****************************97655 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.6
    TIGR02846 170 kklkvlkerekevielryGlkdg..eektqreiakklgisrsyvsriek 216
                  +  + l+e  k++   r  l+++  +  t  ei++ lg++++ + r + 
  MMETSP1061-20121228|18644_1 518 QVPQRLHENSKRIEVCRKELTETldRPPTVSEISEALGMTKAQIDRCDT 566
                  44467888888888888888876225568999*****999999998765 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 1.7e-05
    TIGR02846 153 dsvleavekklevkklkkkl.kvlkerekevielryGlkdg...ee...ktqreiakklgisrsyvsriekkalkkl 222
                  d+ +e+++     ++l k l + l++ e ++++lr+G+ d+   ++   +t  e+  ++g+    v ri  +alkkl
  MMETSP1061-20121228|18644_1 605 DDETEKLDLIHLREDLLKALsSNLTKEEASILTLRFGMDDEyasSKkagRTISEVGDIMGLKPDKVRRIILRALKKL 681
                  3334444443334556666668999*************98622223112556688899******************9 PP

>> TIGR02835  spore_sigmaE: RNA polymerase sigma-E factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.3   8.9e+02     148     187 ..     187     226 ..     183     228 .. 0.87
   2 !   20.4   0.0   2.3e-07   6.2e-05      44     114 ..     430     503 ..     421     516 .. 0.79
   3 ?    2.6   0.0     0.063        17     176     226 ..     520     572 ..     502     582 .. 0.84
   4 !   16.4   0.8   3.6e-06   0.00099     161     228 ..     609     683 ..     578     687 .. 0.71

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.3
    TIGR02835 148 lsdvlgtdsdivykeleeevdrellkkalkklndrekkil 187
                  l dv+ + + i    l e v+ + l +  ++ n+r+k+ l
  MMETSP1061-20121228|18644_1 187 LKDVIVAADSIQKTRLSERVQFRGLSTVPNRRNQRKKRTL 226
                  7799999999999999999999999999999999999876 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 2.3e-07
    TIGR02835  44 eklekgdeavksiliernlrlvvyiarkfentgi....niedlvsigtiglikavntfdpekkiklatyasrcie 114
                  + +e+g  ++k+ l+  nlr+v  + + +   g+    n  dl+  g + li+a + fdp+k  +++tya   i 
  MMETSP1061-20121228|18644_1 430 QTIEEGL-EAKNRLVTSNLRMVQGVVNVYIKNGLkgqyNAGDLMQEGIVALIRAAEKFDPTKGFRFSTYAMYWIR 503
                  4555554.5899*********97776666666652222789*****************************87665 PP

  == domain 3    score: 2.6 bits;  conditional E-value: 0.063
    TIGR02835 176 lkklndrekkilelrfgladgeek..tqkevadllgisqsyisrlekrilkrl 226
                   ++l++  k+i   r  l++  ++  t  e+++ lg++++ i r +  i +r+
  MMETSP1061-20121228|18644_1 520 PQRLHENSKRIEVCRKELTETLDRppTVSEISEALGMTKAQIDRCDTAIAQRI 572
                  57899999999999999999988766899*****************9999886 PP

  == domain 4    score: 16.4 bits;  conditional E-value: 3.6e-06
    TIGR02835 161 keleeevdre.llkkalkklndrekkilelrfgladgee......ktqkevadllgisqsyisrlekrilkrlkk 228
                  ++l+    re llk   ++l++ e  il lrfg+ d++       +t  ev d++g+    + r+  r lk+l+ 
  MMETSP1061-20121228|18644_1 609 EKLDLIHLREdLLKALSSNLTKEEASILTLRFGMDDEYAsskkagRTISEVGDIMGLKPDKVRRIILRALKKLRI 683
                  4444433344055555578***************986541122227788*********************99985 PP

>> TIGR02952  Sig70_famx2: RNA polymerase sigma-70 factor, TIGR02952 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.051        14      26      78 ..     456     510 ..     450     563 .. 0.80
   2 !   18.1   0.1   1.6e-06   0.00043     105     167 ..     609     682 ..     566     685 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.051
    TIGR02952  26 rYiyyrvgdkytaeDLvsevFlrvlrkissfkekkn.dfeaW.LftiArnvvaDy 78 
                   Yi   + ++y+a DL++e  + ++r  ++f   k   f+++ ++ i + v  D 
  MMETSP1061-20121228|18644_1 456 VYIKNGLKGQYNAGDLMQEGIVALIRAAEKFDPTKGfRFSTYaMYWIRAAVKRDQ 510
                  59999999****************9999999876665777763455555555555 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 1.6e-06
    TIGR02952 105 eavlkelaneklleav.kkLtpkqqeviaLrFaqn..........LkiaevarilgktegavkalqfravkkLk 167
                  e        e+ll+a+ ++Lt+++  +++LrF+ +            i ev  i+g +++ v+ +  ra+kkL+
  MMETSP1061-20121228|18644_1 609 EKLDLIHLREDLLKALsSNLTKEEASILTLRFGMDdeyasskkagRTISEVGDIMGLKPDKVRRIILRALKKLR 682
                  3333334456777775268*************86522222222225689***********************98 PP

>> TIGR02984  Sig-70_plancto1: RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.1       3.6   9.8e+02      87     132 ..     345     391 ..     337     397 .. 0.66
   2 !   10.5   0.0   0.00026     0.071       7      73 ..     437     507 ..     433     543 .. 0.75
   3 !   11.3   0.0   0.00015      0.04     158     186 ..     655     683 ..     642     686 .. 0.92

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.6
    TIGR02984  87 qkRdirrEqsleaakrvdessvrleallaa.eessPseeaarrEaav 132
                  ++R++      +a+k v +s v++++ + + ++ +P ee++  E+++
  MMETSP1061-20121228|18644_1 345 KRRQTSGQSMYKASKAVPDSLVQFANEIHDvDRITPKEEIMLGEKTQ 391
                  44444444444455888889999988888734568888888877654 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00026
    TIGR02984   7 ealgelldryreylrlLarvqldarlrrrvdpsDvvQealleAhrrldefrgkteeefaa....WLRkila 73 
                  ea ++l+ +   +++ +++v++++ l+++ ++ D++Qe +++  r+ ++f  +    f +    W+R+ ++
  MMETSP1061-20121228|18644_1 437 EAKNRLVTSNLRMVQGVVNVYIKNGLKGQYNAGDLMQEGIVALIRAAEKFDPTKGFRFSTyamyWIRAAVK 507
                  788899999999999***********************877766666666555555443211227776554 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00015
    TIGR02984 158 slaevaerldkseaavsklylRalkrLre 186
                   ++ev++ ++ +++ v+   lRalk+Lr 
  MMETSP1061-20121228|18644_1 655 TISEVGDIMGLKPDKVRRIILRALKKLRI 683
                  689************************95 PP

>> TIGR02989  Sig-70_gvs1: RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00019     0.052       7      68 ..     447     506 ..     442     543 .. 0.71
   2 ?   -2.3   0.0       2.9   7.9e+02      85     124 ..     602     641 ..     587     663 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00019
    TIGR02989   7 ltrhqrsvrafvrslvadlddadDvlQetfvtawekldefeeetdfvaWargiArnkvlnar 68 
                  l+  q  v  +++  ++    a D++Qe  v++++ +++f++ + f     + A++ ++ a+
  MMETSP1061-20121228|18644_1 447 LRMVQGVVNVYIKNGLKGQYNAGDLMQEGIVALIRAAEKFDPTKGFRF--STYAMYWIRAAV 506
                  55667888999999999999***********************99753..333333333333 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 2.9
    TIGR02989  85 alaaeeaeeaersedeleaLekClekLperqrellelrYe 124
                  ++++ e e+ + ++ + + L++   +L++++ ++l lr+ 
  MMETSP1061-20121228|18644_1 602 QVDDDETEKLDLIHLREDLLKALSSNLTKEEASILTLRFG 641
                  5555566666666666666777777777777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.34
# Mc/sec: 2709.66
//
Query:       MMETSP1061-20121228|18645_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 2016.79
//
Query:       MMETSP1061-20121228|18646_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    6.2   6.7        1.4    5.8   4.6    1.1  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   4.6   0.00034       1.4      14     102 ..      95     191 ..      90     200 .. 0.54

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.00034
    TIGR01554  14 elkkltedekeeeaeeekkekda....lkaeidkleaeierleeaaaeeeakeaasgeagkeeeeeeeakeeaaeafraylrrgddalaee....ak 102
                  +l+++++++++e+++e+  +++     ++++ ++l++e +++e+  +e+e+ +++++ ++++ ee+e+++ +++ ++ ++ + + +++ +      +
  MMETSP1061-20121228|18646_1  95 ALEEQQQEDEDEDEDEDSYSHEDvcdaATNDCAALNQEEDDEEDYYNEDEQVQNQDQVQDENFEEDEDEEYRTDLYVHHWTQAQIEEMHSVyqryLR 191
                  4443333333333333333333356669999999999999999996666666666666666666655554444433444555555444444555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1367.89
//
Query:       MMETSP1061-20121228|18649_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1853.85
//
Query:       MMETSP1061-20121228|18648_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1989.99
//
Query:       MMETSP1061-20121228|18647_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       548  (0.133593); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        55  (0.0134081); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.63u 0.18s 00:00:00.81 Elapsed: 00:00:00.46
# Mc/sec: 1328.50
//
Query:       MMETSP1061-20121228|18652_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1852.25
//
Query:       MMETSP1061-20121228|18650_1  [L=685]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 3229.02
//
Query:       MMETSP1061-20121228|18651_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.25
# Mc/sec: 3009.35
//
Query:       MMETSP1061-20121228|18653_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.1    6.5   6.1         11    4.2   0.2    2.6  3  TIGR00823 EIIA-LAC: PTS system, lactose-specific IIa component


Domain annotation for each model (and alignments):
>> TIGR00823  EIIA-LAC: PTS system, lactose-specific IIa component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.6    0.0028        11      23      42 ..      11      30 ..       5      48 .. 0.79
   2 ?   -1.7   0.0      0.18   7.2e+02      13      22 ..      38      47 ..      30      56 .. 0.73
   3 ?    4.2   0.2    0.0027        11      19      62 ..      87     130 ..      84     141 .. 0.73

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0028
    TIGR00823 23 ealkaakaGdfakakellee 42
                 +a++aak+G+++ a +l  +
  MMETSP1061-20121228|18653_1 11 QAIEAAKQGEADLAAQLGYN 30
                 79**********99987555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.18
    TIGR00823 13 yaGdaRskal 22
                  aG+aRs+  
  MMETSP1061-20121228|18653_1 38 TAGQARSATT 47
                 5899999764 PP

  == domain 3    score: 4.2 bits;  conditional E-value: 0.0027
    TIGR00823  19 skalealka.akaGdfakakelleeaeeelaeahkaqtkllakea 62 
                  s++ eal+  a  Gd+++ak+ l+ a++ +++a ++  +  ++ea
  MMETSP1061-20121228|18653_1  87 SEFREALTEvAAFGDAEAAKSGLKIARTLVKNATTK-GQQTDDEA 130
                  5667888753788*************9999998653.23334555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1606.82
//
Query:       MMETSP1061-20121228|18654_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 1081.58
//
Query:       MMETSP1061-20121228|18658_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 421.11
//
Query:       MMETSP1061-20121228|18657_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1974.34
//
Query:       MMETSP1061-20121228|18659_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2381.08
//
Query:       MMETSP1061-20121228|18656_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1235.90
//
Query:       MMETSP1061-20121228|18655_1  [L=773]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.2e-231  766.5   1.8   8.1e-231  765.9   1.2    1.2  1  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   2.2e-205  681.8   0.3   2.7e-205  681.5   0.2    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
   1.2e-152  507.6   2.4   1.5e-152  507.3   1.7    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
    1.5e-56  190.1   0.0    9.6e-53  177.5   0.0    2.1  2  TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
    3.3e-18   63.9   0.0    6.6e-18   63.0   0.0    1.4  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    3.5e-14   50.2   0.0    5.1e-14   49.7   0.0    1.2  1  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase
    1.9e-13   48.4   0.0    3.4e-13   47.6   0.0    1.4  1  TIGR01929 menB: naphthoate synthase
      4e-12   43.8   0.0    6.5e-12   43.1   0.0    1.2  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    3.6e-10   37.4   0.0    7.9e-10   36.3   0.0    1.5  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    4.1e-05   20.7   0.0    7.7e-05   19.7   0.0    1.5  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
    0.00089   15.9   0.3     0.0026   14.4   0.0    1.8  2  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
     0.0087   12.9   0.0      0.014   12.2   0.0    1.2  1  TIGR02053 MerA: mercuric reductase
  ------ inclusion threshold ------
      0.022   11.7   0.4      0.039   10.8   0.3    1.4  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  765.9   1.2  2.6e-233  8.1e-231      21     737 .]      68     771 ..      48     771 .. 0.95

  Alignments for each domain:
  == domain 1    score: 765.9 bits;  conditional E-value: 2.6e-233
    TIGR02441  21 gdvavvkidspnskvntlskelsaefkevl.deletneavksavlisskpgsfvaGadidmlkacktaeevtqlsreaqklleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvdplGpGlkpaeertieyleevavkvakelankklkvkrd.kGlvekitsyvmtldlvkdkvyktvkekvlkqtkGlypaplkildvvkagldkgsdaGyeaeskafGelsatkeskaliglfdGqveckknkf.GkperevkelavlGaGlmGaGiaqvsvdkGlktvlkdateagldrGqqqvakglnkkvkkkkltslerdsilsnltatldysa.....fkkadvvieavfedlklkhkvlkeveavvpehciiasntsalpikeiaavssrpekviGmhyfspvdkmqlleiittdktskdtlasavavGlkqGkvvivvkdgpGfyttrilgpmlaevirllqeGvdpkeldklttkfGfpvGaatlvdevGvdvaehvaedlgka.lGerlgGGslellkelvkkGflGrksGkGifiydegkkgskkvnsdadeilkklkllakaevssde.dlqlrlvsrfvneavlcleegilaspleGdigavfGlGfppflGGpfrfvdlyGadklvdklkkyeavygaqfkpcqllldhakspgkkfy 737
                  ++va++++d p  kvn++s +ls+e ++   +e+e+n  vk++v+ s+kpg f+aGadi  +k  +  ++   l +e+ + ++++ + k p+vaai G  lGGGle a+ c+yr+  + +kt+lglpev lGllpG Ggtq l  lv++++a+d++ltGk+i+ d+akk+Glvd +v p               +e+ a++ a ++ n+klk k + k l++++ +   ++++ ++ +++++++ v+k+t+G+ypap  i+  v+ g+++ + + +e e+++f +l+atkes alig+fdG ++ kkn f G++  +v+++av+GaGlmGaGiaq++ +kG+ ++lkd ++++++rG + +  + +kk+k+++lt+++++   sn+++  d sa     f kad+vieavfedl+lk+k++ +ve++ pehc++a+ntsa+pi  ia +s+rpe +iGmhyfspv  m lleii +d ts+ t a+a  vG kqGk  ivvkd pGfy+ r+lgp+l ev  l+ +Gv   +ldk  ++fG+pvG  tl+devG+d+++hva +l+ a lG r+ GG+++++k+++ kG+lG+ksG+G++ yd++kk  k++  d++  l+++     ++ + de ++q r++srfvnea+ cle++i+++p+ Gdig vfG Gf pf GGpfr+ d+ G +  vd ++++++ yg qf+pcqll+d+a + +kkfy
  MMETSP1061-20121228|18655_1  68 EGVAIIRFDCPK-KVNSISFALSEEAQKLWgEEIESNADVKAVVFSSAKPGMFIAGADIFDIKKIENKQDLVGLIEEGINFFKHMREKKIPLVAAIDGPALGGGLEWAMWCDYRVCSNSSKTKLGLPEVKLGLLPGFGGTQNLRELVGLQNAMDMMLTGKDIRPDKAKKMGLVDMVVAPQ-------------SVEKDAIQSAIDMMNGKLKPKTKpKSLMNRLLE---DTSIGRKLMWNQIEKMVQKNTNGNYPAPNAIIRCVQHGISN-PATKFENEREEFAKLAATKESEALIGIFDGMTQMKKNPFnGNAAAPVETVAVMGAGLMGAGIAQITAEKGVSVLLKDRNDEAIERGESYMRDNWDKKLKRRRLTKFQHNLNTSNVVGLTDDSAnlgrhFGKADMVIEAVFEDLDLKKKIVADVETLTPEHCVFATNTSAIPIGAIAEGSQRPENIIGMHYFSPVPSMPLLEIIPHDSTSETTKATAFDVGTKQGKTCIVVKDVPGFYVNRCLGPFLVEVSALVCDGVSLDKLDKAVKNFGMPVGPVTLADEVGIDITSHVASFLSDAdLGVRMDGGNIDVMKNMIGKGWLGKKSGQGFYTYDKKKK-GKTISPDVKAYLQEFV---TQDLNLDEaEIQNRIISRFVNEAAKCLEDEIIENPVVGDIGLVFGTGFAPFRGGPFRYLDQVGVSDYVDMMNSFADKYGPQFEPCQLLKDYAMK-DKKFY 771
                  68*********6.9************9987478************************************************************************************************************************************************994.............47999**************985438***99865...788899999999999*************************9.8999**********************************978899************************************************************************99997643334499********************************************************************************************************************************************************************99879************************************9.689******9999874...44555555379*********************************************************************************99.9***9 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  681.5   0.2  8.4e-208  2.7e-205       4     699 .]      63     771 ..      60     771 .. 0.94

  Alignments for each domain:
  == domain 1    score: 681.5 bits;  conditional E-value: 8.4e-208
    TIGR02440   4 ltvredniailtidvpgeklntlkaefadqvaeil.kqlkekkelrglvlvsgkpdsfiagadismlaacktadeakalaqkgqellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvv.pksil...ldvavelak.kgklkrkalslqerllegtalgrallfdlvakktekktrgnypaaerildvvrkglakgmkkgleaearafgelvlskesaalrsiffattelkketgsdatpaaikkvgvlggglmgggiasvtatkaglpvrikdineqgiknalkyaydlldkkvkrrrlkkaerdkklalisgttdy.....rgfkevdivveavfedlelkqqmvkdieretaehtifasntsslpigqiaaaaerpeqviglhyfspvekmplveviphaktseetiattvalakkqgktpivvadkagfyvnrilapyineaarlllegesvehidkalvdfgfpvgpitlldevgidvgakispile.aelgerfkapa..vfdkllsddrkgrkngkgfylygaktkkkevdesvykllg..vkpeakleasavaercvllmlneavrcldegvirsardgdigavfgigfppflggpfryldslgadkvvkilkrlatqygerfepcerlvamaaeeesfy 699
                  +++ ++++ai+++d p +k+n++  +++++ +++  ++++++ +++ +v+ s+kp  fiagadi  ++  +  ++   l ++g + + +++  +i++vaai g+ lgggle a+ c  rvcs+ +kt lglpev+lgllpg ggtq l  lvg+ +a+dm+ltgk++r+ +a+k+glvd vv p+s+    ++ a+++   k k+k+k++sl +rlle t++gr+l++++++k ++k t+gnypa+++i+ +v++g+++ ++k +e+e ++f++l+ +kes+al  if   t++kk++    ++a+++ v+v+g glmg gia++ta k g+ v +kd n++ i++  +y  d  dkk krrrl+k +++ +   + g td      r f ++d+v+eavfedl+lk+++v+d+e  t eh +fa+nts++pig ia+ ++rpe++ig+hyfspv  mpl+e+iph+ tse t at+  +  kqgkt ivv+d  gfyvnr l p++ e  +l+ +g s++++dka+ +fg+pvgp+tl devgid+++++   l  a+lg r+   +  v+++++  +  g+k+g+gfy y +k k k++ + v + l   v+ + +l+ +++ +r +  ++nea++cl++++i+++  gdig vfg gf pf ggpfryld +g  + v++++++a++yg +fepc+ l++ a ++++fy
  MMETSP1061-20121228|18655_1  63 VEFTPEGVAIIRFDCP-KKVNSISFALSEEAQKLWgEEIESNADVKAVVFSSAKPGMFIAGADIFDIKKIENKQDLVGLIEEGINFFKHMREKKIPLVAAIDGPALGGGLEWAMWCDYRVCSNSSKTKLGLPEVKLGLLPGFGGTQNLRELVGLQNAMDMMLTGKDIRPDKAKKMGLVDMVVaPQSVEkdaIQSAIDMMNgKLKPKTKPKSLMNRLLEDTSIGRKLMWNQIEKMVQKNTNGNYPAPNAIIRCVQHGISNPATK-FENEREEFAKLAATKESEALIGIFDGMTQMKKNPFNGNAAAPVETVAVMGAGLMGAGIAQITAEK-GVSVLLKDRNDEAIERGESYMRDNWDKKLKRRRLTKFQHNLNTSNVVGLTDDsanlgRHFGKADMVIEAVFEDLDLKKKIVADVETLTPEHCVFATNTSAIPIGAIAEGSQRPENIIGMHYFSPVPSMPLLEIIPHDSTSETTKATAFDVGTKQGKTCIVVKDVPGFYVNRCLGPFLVEVSALVCDGVSLDKLDKAVKNFGMPVGPVTLADEVGIDITSHVASFLSdADLGVRMDGGNidVMKNMIGKGWLGKKSGQGFYTYDKKKKGKTISPDVKAYLQefVTQDLNLDEAEIQNRIISRFVNEAAKCLEDEIIENPVVGDIGLVFGTGFAPFRGGPFRYLDQVGVSDYVDMMNSFADKYGPQFEPCQLLKDYAMKDKKFY 771
                  678899********99.58*************9984689********************************************************************************************************************************************99856766411144455543326689999**************************************************98776.9*************************************************************987.89**********************************9998887777777764222336799****************************************************************************************************************************************************************99996368*****98755599********************999999999888877775337888899999*****************************************************************************************9 PP

>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  507.3   1.7  4.8e-155  1.5e-152      10     714 .]      63     771 ..      58     771 .. 0.92

  Alignments for each domain:
  == domain 1    score: 507.3 bits;  conditional E-value: 4.8e-155
    TIGR02437  10 velledgiaelvfdapgsvnkldratlasldkal.dalkaqsdlkgllltsdk.dafivGaditeflelfakpeeellqwleeansvfnkledlpvptvaavkGfalGGGlevvlatdfriadkt..akiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkaekleaaalqllkdainekldykakrqrklekl.klskleammsftiakGlvaqvaGkhypapvtavktiekaarfgreealeiekkafvklakteeakalvGlflndqyvkgkakkaaklakkvkqaavlGaGimGGGiayqsaskGvpvvmkdiaeksldlGlteaakllnkqlerGkidglkl....aevlnsitptleya.dvdnvdivveavvenpkvkkavlaeveekvredavlasntstisisllakalkrpenfvGmhffnpvhrmplvevirGekssdetiakvvayaskmGktpivvndcpGflvnrvlfpyfaGfskllrdGadfakidkvmekkfGwpmGpaylldvvGidtahhaqavma.eGfpdrmkkdrrdaidalfeakrlGqknGkGfyayevdkkGkpkkevdaevlellkevvaeqrdfddeeiiarmmiplilevvrcleeGivasaaeadmalvyGlGfppfrGGvlryldslGvaefvaladqyae.lGalyevteklrelakknesyy 714
                  ve   +g+a + fd p  vn +  a   + +k   + +++++d+k+++++s k  +fi Gadi ++ ++  +++++l+  +ee  + f+++ + ++p vaa++G alGGGle  + +d+r+ +++  +k+Glpe+klG+lpGfGGt  l  l+G ++a++++ +Gk+ r ++a k+glvd vv+++ +e+ a+q   d +n+kl  k+k +  +++l + + +   + ++    +v + +  +ypap + ++ ++++        +e e+++f+kla t+e++al+G+f    ++k++    +  a  v+  av+GaG+mG Gia  +a kGv v++kd ++++++ G +       k+l+r +++ ++     ++v+     + + + +++++d+v+eav e+  +kk+++a+ve    e++v+a+nts+i+i  +a+  +rpen++Gmh+f pv  mpl+e+i  + +s+ t a+     +k Gkt ivv d pGf+vnr l p++   s l+ dG+ + k+dk +++ fG p+Gp  l d vGid + h  + ++ + +  rm+  + d +  +     lG+k G+Gfy+y++ kkGk   +++++v+  l+e v+++ ++d+ ei +r++  +++e+ +cle+ i++ +   d++lv+G Gf pfrGG +ryld +Gv+++v++ + +a+  G+ +e+ + l++ a k++ +y
  MMETSP1061-20121228|18655_1  63 VEFTPEGVAIIRFDCPKKVNSISFALSEEAQKLWgEEIESNADVKAVVFSSAKpGMFIAGADIFDIKKI--ENKQDLVGLIEEGINFFKHMREKKIPLVAAIDGPALGGGLEWAMWCDYRVCSNSskTKLGLPEVKLGLLPGFGGTQNLRELVGLQNAMDMMLTGKDIRPDKAKKMGLVDMVVAPQSVEKDAIQSAIDMMNGKLKPKTKPKSLMNRLlEDTSIGRKLMWNQIEKMVQKNTNGNYPAPNAIIRCVQHGISNPAT-KFENEREEFAKLAATKESEALIGIFDGMTQMKKNP-FNGNAAAPVETVAVMGAGLMGAGIAQITAEKGVSVLLKDRNDEAIERGESYMRDNWDKKLKRRRLTKFQHnlntSNVVGLTDDSANLGrHFGKADMVIEAVFEDLDLKKKIVADVETLTPEHCVFATNTSAIPIGAIAEGSQRPENIIGMHYFSPVPSMPLLEIIPHDSTSETTKATAFDVGTKQGKTCIVVKDVPGFYVNRCLGPFLVEVSALVCDGVSLDKLDKAVKN-FGMPVGPVTLADEVGIDITSHVASFLSdADLGVRMDGGNIDVMKNMIGKGWLGKKSGQGFYTYDKKKKGK---TISPDVKAYLQEFVTQDLNLDEAEIQNRIISRFVNEAAKCLEDEIIENPVVGDIGLVFGTGFAPFRGGPFRYLDQVGVSDYVDMMNSFADkYGPQFEPCQLLKDYAMKDKKFY 771
                  677789****************998888887776368**************99458*******987665..556679999*****************************************976522789*******************************************************************************9998887626678999999999999**********************9987655.5789*********************8888888765.55677888999*****************************************999*******9999876511114555555555555436899*************************************************************************************************************************************9966.*****************7766666555167999******************************9999986...6899***********************************************************************************98538******************998 PP

>> TIGR02279  PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.5   0.0   3.1e-55   9.6e-53       5     290 ..     367     656 ..     363     675 .. 0.90
   2 !   10.6   0.0   0.00012     0.039     419     501 ..     685     770 ..     665     772 .. 0.80

  Alignments for each domain:
  == domain 1    score: 177.5 bits;  conditional E-value: 3.1e-55
    TIGR02279   5 vvkvaviGaGamGaGiaqvaaraGhtvllydiraealaravagiekdlkslvekgkldaaeaeatlkrlvPvaalea.....ladaglvieaivenlevkkalfaqleelltadaiiasntsslsitalaaglarPervaGlhffnPaPlmalvevvsGlateaevaetlyetarawGkqPvrarstPGfivnrvarPyyaealrvleeqaaepasldallrdgaGfamGpleltdliGhdvnfavtcsvfeafyqdrrfa.PslvqkelvaaGrlGrksGrGvyeyaeeae 290
                  v +vav+GaG mGaGiaq++a++G +vll d + ea+ r+ + ++ + ++++++ +l+  + +     +v +++  a       +a++viea+ e+l++kk++ a++e+l + +++ a+nts++ i a+a g +rPe+++G+h+f P P m l+e++   +t +   +t +++    Gk  + ++  PGf vnr   P+  e   ++ +++   + ld ++++  G+++Gp+ l d +G d+   v+  + +a  + r       v k+++  G lG+ksG+G+y y ++++
  MMETSP1061-20121228|18655_1 367 VETVAVMGAGLMGAGIAQITAEKGVSVLLKDRNDEAIERGESYMRDNWDKKLKRRRLTKFQHNLNTSNVVGLTDDSAnlgrhFGKADMVIEAVFEDLDLKKKIVADVETLTPEHCVFATNTSAIPIGAIAEGSQRPENIIGMHYFSPVPSMPLLEIIPHDSTSETTKATAFDVGTKQGKTCIVVKDVPGFYVNRCLGPFLVEVSALVCDGV-SLDKLDKAVKN-FGMPVGPVTLADEVGIDITSHVASFLSDADLGVRMDGgNIDVMKNMIGKGWLGKKSGQGFYTYDKKKK 656
                  679************************************************************9999999987654311212579*********************************************************************************************************************887776665.57889999876.799********************99999998765544134689********************88754 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00012
    TIGR02279 419 lrtvamlaneaadavlkgvasar...didtamraGvn.yPkGPlawaaqlGiarvlrvlenlqehyGeeryrpssllrrkalkgeal 501
                   r ++ ++neaa  +   +  +    di +   +G   +  GP+ + +q+G++  + +++ + ++yG  ++ p++ll+  a+k++ +
  MMETSP1061-20121228|18655_1 685 NRIISRFVNEAAKCLEDEIIENPvvgDIGLVFGTGFApFRGGPFRYLDQVGVSDYVDMMNSFADKYGP-QFEPCQLLKDYAMKDKKF 770
                  58888999****999999877641115666666665414456*************************7.69********99998765 PP

>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.0   0.0   2.1e-20   6.6e-18       7     194 ..      68     258 ..      63     288 .. 0.85

  Alignments for each domain:
  == domain 1    score: 63.0 bits;  conditional E-value: 2.1e-20
    TIGR02280   7 kgvlrltlnrpdklnsfteemhaelaeal.erverdd.vrallltGaGrG.fcaGqdlsernvtkgaapdlGetvekfynplvrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqaf..aklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvddealadevqalaah 194
                  +gv+ + ++ p+k+ns +  + +e ++   e++e++  v+a++++ a  G f aG d+ + +   ++  dl  ++e+  n + +++++ + p+v+a++G a G G + a+ +d  + ++s+k    +  +klGl+p  GGt  l  lvG   a+ + l+g+++  ++a++ Gl+  vv+ + +++++ + a  
  MMETSP1061-20121228|18655_1  68 EGVAIIRFDCPKKVNSISFALSEEAQKLWgEEIESNAdVKAVVFSSAKPGmFIAGADIFDIKKI-ENKQDLVGLIEEGIN-FFKHMREKKIPLVAAIDGPALGGGLEWAMWCDYRVCSNSSKTKLGLpeVKLGLLPGFGGTQNLRELVGLQNAMDMMLTGKDIRPDKAKKMGLVDMVVAPQSVEKDAIQSAID 258
                  689999**************999998877467999877*********999789******99765.46789999****999.6799*****************************9999998766554339********************************************9998877665554444433 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   1.6e-16   5.1e-14      65     233 ..     104     266 ..      80     313 .. 0.81

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 1.6e-16
    TIGR03222  65 pevrvvvltsakdkvfcaGanikmlglsthahkvnfckftnetrngiedaseesglkflaavnGtaaGGGyelalacdeivlvddrssavslpevpllavlpGtGGltrvtdkrrvrrdladifctieeGvkGkrakewrlvdevvksskfdaavaeraaelaaksdrp 233
                   +v++vv++sak+ +f aGa+i+ + + +   k ++  + +e  n ++   +e +   +aa++G a GGG e a+ cd+ v  + +++ + lpev  l++lpG GG   + +   + ++  d++ t  + ++ ++ak+  lvd vv+++ +++   + a ++   + +p
  MMETSP1061-20121228|18655_1 104 ADVKAVVFSSAKPGMFIAGADIFDIKKIE--NKQDLVGLIEEGINFFKHM-REKKIPLVAAIDGPALGGGLEWAMWCDYRVCSNSSKTKLGLPEVK-LGLLPGFGGTQNLRELVGL-QNAMDMMLT-GKDIRPDKAKKMGLVDMVVAPQSVEKDAIQSAIDMMNGKLKP 266
                  58********************9887665..6889999******998875.667899**************************************7.69*******8877655443.455677665.667*******************99988777777766554444 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.6   0.0   1.1e-15   3.4e-13       6     203 ..      65     263 ..      60     298 .. 0.84

  Alignments for each domain:
  == domain 1    score: 47.6 bits;  conditional E-value: 1.1e-15
    TIGR01929   6 yeksedaiakiaidrpkvrnafrpktvdelleal.ddaredsdiGvviltGaGdkafcsGGdq.kvrgksGykdesGesrlnvlevqrlirtlpkpvialvnGyaiGGGhvlhvvcdltias..enarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelaeleketvewareilaks 203
                  ++   +++a i +d pk  n+      +e  +   ++   + d+  v+++ a    f +G d   ++  +  +d  G  +   +++ + +r    p++a ++G a+GGG    + cd  + s   ++++g  + k+G + g  G+  l  +vG + a ++++++++    +a+kmGlv++vv  + +ek++++ a ++++  
  MMETSP1061-20121228|18655_1  65 FTP--EGVAIIRFDCPKKVNSISFALSEEAQKLWgEEIESNADVKAVVFSSAKPGMFIAGADIfDIKKIENKQDLVGLIEEG-INFFKHMREKKIPLVAAIDGPALGGGLEWAMWCDYRVCSnsSKTKLGLPEVKLGLLPGFGGTQNLRELVGLQNAMDMMLTGKDIRPDKAKKMGLVDMVVAPQSVEKDAIQSAIDMMNGK 263
                  444..88999999999999999999999988877245667789******************963799999999999987755.689999*******************************993345677888888898877667888999*********************************************9998755 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   2.1e-14   6.5e-12      10     186 ..      68     249 ..      60     263 .. 0.87

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 2.1e-14
    TIGR03210  10 ngvatiiinraeklnafrgrtcdelikal.kkagydreigvivlagagdkafctggdqsthdgnydgrgviglpveelh..sairdvakpviarvqgyaigggnvlvticdltiase..kavlgqvgpkvgsvdpgyg.tallarvvgekkareiwylcrrysakealamglvnavvphdqld 186
                  +gva+i  + ++k+n++     +e  k   ++ + + ++ ++v++ a    f +g d    +   + +  +gl  e ++  + +r+   p++a ++g a+ggg   +  cd+ ++s+  k+ lg    k+g + pg+g t  l  +vg ++a ++    +    ++a+ mglv++vv  + ++
  MMETSP1061-20121228|18655_1  68 EGVAIIRFDCPKKVNSISFALSEEAQKLWgEEIESNADVKAVVFSSAKPGMFIAGADIFDIKKIENKQDLVGLIEEGINffKHMREKKIPLVAAIDGPALGGGLEWAMWCDYRVCSNssKTKLGLPEVKLGLL-PGFGgTQNLRELVGLQNAMDMMLTGKDIRPDKAKKMGLVDMVVAPQSVE 249
                  79****************9999999887635789999********************999888888999999988866422789******************************9863378899999999965.99963788999*******************************9876655 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.5e-12   7.9e-10      43     175 ..     104     244 ..      70     264 .. 0.71

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 2.5e-12
    TIGR03189  43 aalravlldaegp.hfsfgasveehmp....dqcaamlkslhklviemldspvpilvavrgqclggglevaaagn..llfaapdaklgqpeiklgvfapa.ascllpervgkvaaedllysgrsidgaegariglvdavae 175
                  a ++av++ +  p  f  ga + +       ++   +++   ++ ++m +  +p++ a+ g  lgggle a+  +  +   + ++klg pe+klg++     +  l e vg   a d++ +g+ i  ++++++glvd+v+ 
  MMETSP1061-20121228|18655_1 104 ADVKAVVFSSAKPgMFIAGADIFDIKKienkQDLVGLIEEGINFFKHMREKKIPLVAAIDGPALGGGLEWAMWCDyrVCSNSSKTKLGLPEVKLGLLPGFgGTQNLRELVGLQNAMDMMLTGKDIRPDKAKKMGLVDMVVA 244
                  456666665555524555666543322000022233444445677899**********************9987611455667899*********99765156789*******************************9974 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   2.4e-07   7.7e-05      41     216 ..      73     249 ..      68     353 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 2.4e-07
    TIGR03200  41 iildnpkqynsyttdmvk.aiilafrrassdrdvaavvftavgdkafctggntkeyaeyyagnpqeyrqymrlfndmvsailgcdkpvicrvngmrigggqeigmaadlsvaqdl..akfgqagpkhgsaaiggatdflplmigceqamvsgtlcepfsahkakrlgiivdvvpalkvd 216
                  i +d pk+ ns +  +   a  l  ++  s+ dv+avvf+++    f +g +  +  +   +n q+    ++   ++ + + + + p ++ ++g  +ggg e  m +d+ v+++   +k+g    k g  +  g t+ l  ++g+++am    + +     kak++g++  vv    v+
  MMETSP1061-20121228|18655_1  73 IRFDCPKKVNSISFALSEeAQKLWGEEIESNADVKAVVFSSAKPGMFIAGADIFDIKK--IENKQDLVGLIEEGINFFKHMREKKIPLVAAIDGPALGGGLEWAMWCDYRVCSNSskTKLGLPEVKLGLLPGFGGTQNLRELVGLQNAMDMMLTGKDIRPDKAKKMGLVDMVVAPQSVE 249
                  6677777777777766651334445667788999999999999999999998876654..456666655555555555666677889************************98761157899999************************999999999999999999998888655555 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.1      0.55   1.7e+02     141     189 ..      51      98 ..      24     114 .. 0.70
   2 !   14.4   0.0   8.2e-06    0.0026       2      58 ..     369     422 ..     368     440 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.55
    TIGR03026 141 lklgedfevavnPEflreGnavedllnpdriviGeteeaseavaelYes 189
                   +++ ++e   n Ef+ eG a+ ++  p+++  + + + se +++l+ +
  MMETSP1061-20121228|18655_1  51 PTAERKYEFFTNVEFTPEGVAIIRFDCPKKV-NSISFALSEEAQKLWGE 98 
                  4678889999999***********9999775.55666666777777665 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 8.2e-06
    TIGR03026   2 kiavvGlGYvGlplaallaekgheVvgvDidkekveklnkgkspikepgleellkka 58 
                  ++av+G+G +G+ +a + aekg++V++ D ++e +e   +g+s++ ++  ++l +++
  MMETSP1061-20121228|18655_1 369 TVAVMGAGLMGAGIAQITAEKGVSVLLKDRNDEAIE---RGESYMRDNWDKKLKRRR 422
                  79******************************8775...677777655544444444 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   4.3e-05     0.014     166     211 ..     366     411 ..     334     435 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.3e-05
    TIGR02053 166 ipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeis 211
                    e ++v+G+g +++ +aq+ a  G+ v l  r ++ +++ e  + 
  MMETSP1061-20121228|18655_1 366 PVETVAVMGAGLMGAGIAQITAEKGVSVLLKDRNDEAIERGESYMR 411
                  3499******************************999988887665 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.3   0.00012     0.039       3      35 ..     370     402 ..     368     406 .. 0.94

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00012
    TIGR03364   3 vvvvGaGivGlahAlaaarrGlkVtvierssra 35 
                  v+v+GaG++G  +A   a++G++V + +r+++a
  MMETSP1061-20121228|18655_1 370 VAVMGAGLMGAGIAQITAEKGVSVLLKDRNDEA 402
                  89****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        49  (0.0119454); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.63u 0.16s 00:00:00.79 Elapsed: 00:00:00.46
# Mc/sec: 2217.99
//
Query:       MMETSP1061-20121228|18663_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.34    7.9   6.9       0.63    7.0   4.8    1.4  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   4.8   0.00015      0.63      87     158 ..     122     207 ..      99     215 .. 0.63

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00015
    TIGR00601  87 Paatpesaptptp.satpasvaekksaaPasa...veeessaeeeatatalesedtsaesegdsdre...........tlvvGsere 158
                  P+++pes p +tp sa+ +++ +++ +aP sa   ++ + + + +a+a+ +++  t +e  +dsd++            +v+G+e++
  MMETSP1061-20121228|18663_1 122 PSPAPESTPGSTPgSAPGSAPGSAPGSAPGSApgsAPGSAPGSSPAAAPCFTTDGTFGE-ISDSDAQksiplfyfyemKVVTGTEKQ 207
                  44444444444444444444444444444333111445556666777777777777766.455555566999999999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1916.12
//
Query:       MMETSP1061-20121228|18664_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-06   22.8  60.0    3.7e-06   22.8  41.6    3.0  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
       0.23    6.9 144.5    0.00095   14.7  28.8    3.3  4  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.1  19.7      0.48   9.8e+02     197     369 ..       3     176 ..       1     190 [. 0.67
   2 !   22.8  41.6   1.8e-09   3.7e-06     228     493 ..     199     468 ..     184     470 .. 0.78
   3 !    9.8  30.3   1.5e-05     0.031     241     415 ..     465     638 ..     457     639 .] 0.58

  Alignments for each domain:
  == domain 1    score: -5.1 bits;  conditional E-value: 0.48
    TIGR02168 197 ElerqlksLerQaekAekykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlek...seleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaelee 369
                   l+++ k+ + +a+ Aek   ++++ ++++l+ ++++  + k++ ++ ++ + +  e+  +  +e ++++   + +++ k   ++++e++ ++++   ++++e +  +++++  +e+ +++ ++ ++ +++  +++s+ e +++++++le e + l+ee  +++ +l+ ae++++e
  MMETSP1061-20121228|18664_1   3 KLKEKTKKTKIEAQDAEKTPPKSSRGEKVNLKSYLEEKSASKSSNNNNNNRVPAIDEKSVKSGTEKSAISGTSKSVKTSKvkkKKKKESQPDIDE--ISVQSETKSTKKKKKTDDESVRESPSTASKQSKKSSKKKSNTESYQRRMKALELENAVLMEETVAVRRQLNMAERKIRE 176
                  57778888888888888888888888888888888888888887777777766666655555555555444444444333000333333333333..3556666666667777777777777777777777888888888888888888888888888888888888887777665 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 1.8e-09
    TIGR02168 228 allvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqle.eleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerre....rlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarl 493
                  + +   + e++e +++l+e+++++ +++e lea+l+++eee+ e+++e++e+e++l++++k+    ++ +s+le++ ++ k+++e le+++++l+e +e ++e +k+ +  +++e ++e+ +lk++++++ea  +e+ +e e l++++++++e++++ ++e  ++e+ ++s++a++ +l+ae ++l + +e    r+ +++ +++++  + +a+ +e+++e++el ++  ++++e+e+l+++ e+l++e ++++++ +++ +e a+l++++
  MMETSP1061-20121228|18664_1 199 EEYEYAVIEKDELIQKLTEAVDAQLDKVELLEAKLTRAEEEFCEMEEEMAEMEDNLDDYKKRRGGSEISLSELEERERQVKQKEEYLEEKEKALSEVQEsDDEDDKDGDGSQKKEKSAEVGKLKTKITKMEAFNDELLEENETLRKQNTSMKEKMKDMATEGTSAEQ-EKSAEAKIAELQAENKHLWKANEslrkRTVATNGNNNDAPGQDTAQYQEMATEVQELMAKVSKMRTENEELQKQNESLRQEDNAMKEKENDKTQEDASLAQQM 468
                  3334445577788999999**************************************************************************99866514566778888899999999999999999999888888888888888888888888888877766554.4455555556655555555544400004555566666777778889999999999999999999999999999999999988888888888888877777765 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 1.5e-05
    TIGR02168 241 leeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleer 415
                   +++ +e++e++++++++e e +el++e + lr+++s ++e+++e++ ++++ ++++ +l +++e++  + +++++++eel+++ + l+++  e++ee +++ e+  +  +el+++ +el e++++++  +++l+++ + l +  s+ ++l +++++ +++++++++  e+l+++
  MMETSP1061-20121228|18664_1 465 AQQMANEVQELKSKVSKIEIEKEELHKETDVLRQQDSAMKEKMKEMEMKVNDGSKDQ-ELVKQVEETHTKINEMQTKNEELQKENDMLRQRVAESKEEEKDVGEQNGSKDQELANEVQELREENMDMQTRNEALQKAIASLCQSPSKERKLVNEIEQFKEKVSKMQSLTEELQKE 638
                  345556666666666666666666666666666666666666666666666655443.455555666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666554 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -6.6  19.7       1.3   2.6e+03     264     432 ..       4     176 ..       1     181 [. 0.64
   2 ?   14.7  28.8   4.6e-07   0.00095     735     939 ..     186     392 ..     181     408 .. 0.85
   3 ?    7.0  43.6   9.8e-05       0.2     658     923 ..     262     524 ..     262     531 .. 0.83
   4 ?    6.0  46.8   0.00021      0.42     698     969 ..     366     633 ..     359     639 .] 0.53

  Alignments for each domain:
  == domain 1    score: -6.6 bits;  conditional E-value: 1.3
    TIGR02169 264 lekeleeiekkleelnkkieklgeeeqlavkekleelkaeieklerai....aekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaeler 432
                  l+++ ++ + + ++++k   k + +e++++k+ lee +a+ ++ +++     a  e+ ++   e++a      + + +++++ +++  +  ++  ++++e k+ k++ ++  + + e   +a +  ++++++k + e+++++++ l+ e+  l+ee   ++ +l+ ++ ++ +
  MMETSP1061-20121228|18664_1   4 LKEKTKKTKIEAQDAEKTPPKSSRGEKVNLKSYLEEKSASKSSNNNNNnrvpAIDEKSVKSGTEKSAISGTSKSVKTSKVKKKKKKESQPDIDEISVQSETKSTKKKKKTDDESVRESPSTASKQSKKSSKKKSNTESYQRRMKALELENAVLMEETVAVRRQLNMAERKIRE 176
                  44555555556666666666667777777777777766665544433311113345555555555555555555566666666666666667777778888888888888888888887778888888888888888888888888888888888777777777777777654 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 4.6e-07
    TIGR02169 735 klkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleae..lseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqe.eieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelselee 939
                  +++ +le+l+ +l+e e ++ ek+e +++l + ++++  k++ l+++l   e+e  + ee++ e+e++l++ ++ +   e +l+e+e++  + ++++e+lee+ + l e +  + e+ k+    + +e  a++ +l++++ ++ea   eL ee + L+k+   ++++++ +  +   +e e    + +++el+a+ + l + +++l +
  MMETSP1061-20121228|18664_1 186 TAQIELEDLKMELEEYEYAVIEKDELIQKLTEAVDAQLDKVELLEAKLTRAEEEfcEMEEEMAEMEDNLDDYKKRRGGSEISLSELEERERQVKQKEEYLEEKEKALSEvQESDDEDDKDGDGSQKKEKSAEVGKLKTKITKMEAFNDELLEENETLRKQNTSMKEKMKDMATEGTSAEQEKSA-EAKIAELQAENKHLWKANESLRK 392
                  567799******************************************9999883357899***************************************99988876614556667777778888889999**************************************99888777766554.66777777777777666666655 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 9.8e-05
    TIGR02169 658 GGs.raersgelvsasekeklerlrerleeLerelesl.qselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkel 923
                  GGs  + +  e ++++ k+k+e l+e++++L + +es   ++++   ++ +e+s+++ + + ki ++e+  ++l ee+e+l+++ + ++ek++ +  e + +++e+ + ea+i+el+++ ++l +a e+l ++    + ++ ++  ++  ++ +++   ++e+ a+++k ++e+e l+++ + l++e ++++e++++  +e ++l +   ++++e++el+ +v ++e e+++L+ke + l+++ +++++k +e+e+++++  k ++  
  MMETSP1061-20121228|18664_1 262 GGSeISLSELEERERQVKQKEEYLEEKEKALSEVQESDdEDDKDGDGSQKKEKSAEVGKLKTKITKMEAFNDELLEENETLRKQNTSMKEKMKDMATEGTSAEQEK-SAEAKIAELQAENKHLWKANESLRKRTVATNGNNNDAPGQDT-AQYQEMATEVQELMAKVSKMRTENEELQKQNESLRQEDNAMKEKENDKTQEDASLAQ---QMANEVQELKSKVSKIEIEKEELHKETDVLRQQDSAMKEKMKEMEMKVNDGSKDQELV 524
                  5664445566777888888888999999999776555405556666788899999*******************************************99999885.67999******************9999999988888777775.567889999999999999999999999999999999999999988888777777666...7889999999999999999999999999999999999999999999999865554443 PP

  == domain 4    score: 6.0 bits;  conditional E-value: 0.00021
    TIGR02169 698 lrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrel....ekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkkelekveeele 969
                   +++e ++ el+++ ++  k  e ++k++ + + +++ +  + ++   + +e+  e++e  +++ +++ e eel+++ + l+++ ++++++++ +k +e  + ++++ +ev+++++++++ie e ++l+ e ++l+++   ++e+++e+e + ++  k +e  k+ +ee++++++e++ + +eL++e   L++ + e ++e + +     +k +el+ e+++ r++  +++++ eal++ +++l +++++e +    + ++e+ k+++ k++   e
  MMETSP1061-20121228|18664_1 366 EKSAEAKIAELQAENKHLWKANESLRKRTVATNGNNNDAPGQDTA---QYQEMATEVQELMAKVSKMRTENEELQKQNESLRQEDNAMKEKEN-DKTQEDASLAQQMANEVQELKSKVSKIEIEKEELHKETDVLRQQDSAMKEKMKEMEMKVNDGSKDQELVKQ-VEETHTKINEMQTKNEELQKENDMLRQRVAESKEEEKDVgeqnGSKDQELANEVQELREENMDMQTRNEALQKAIASLCQSPSKERK---LVNEIEQFKEKVSKMQSLTE 633
                  334444445555555555444444444443333333333333332...333333333333333344444444444444444444444443333.33444455566666677777777777777777777777777777777777777777777777776666655.777777777777777777777777777666655554443110134667777788888888888888888888888887775533333...33444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       985  (0.240127); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                        27  (0.00658216); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 2.08u 0.16s 00:00:02.24 Elapsed: 00:00:00.97
# Mc/sec: 869.50
//
Query:       MMETSP1061-20121228|18662_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1913.84
//
Query:       MMETSP1061-20121228|18661_1  [L=805]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       391  (0.0953194); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.31
# Mc/sec: 3427.46
//
Query:       MMETSP1061-20121228|18665_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-23   81.0   0.1    5.6e-22   76.0   0.0    2.1  2  TIGR00448 rpoE: DNA-directed RNA polymerase
  ------ inclusion threshold ------
        2.8    4.3  10.4        3.8    3.9   7.2    1.2  1  TIGR01651 CobT: cobaltochelatase, CobT subunit
        3.8    3.6   9.0          5    3.2   6.3    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.0   0.0   4.1e-25   5.6e-22       1     130 [.       1     132 [.       1     147 [. 0.94
   2 !    3.1   0.1    0.0098        13     134     164 ..     199     229 ..     167     245 .. 0.71

  Alignments for each domain:
  == domain 1    score: 76.0 bits;  conditional E-value: 4.1e-25
    TIGR00448   1 lyillkiadlvrvPPdkfekdleevikklLnekfegrldknvGlvitik.diedigeGkvieGdGsayievvfealvfkPelqeiveGevieivefGafvslGpl.ddllhvsqvlddyvvydpkkealigk 130
                  ++il+ ++d +rvP + +  ++  ++++ +  k+ +r+  nvGlvi  +    +i +G  ++GdG++++e  f+ +vf+P++ e+  G++++ + +G+ vslG +  d++++   +     y +k   +++ 
  MMETSP1061-20121228|18665_1   1 MFILTTVTDRIRVPAHMLSLPTLTALHNEIDLKYPNRVLMNVGLVICRYgTCLKITNGSCVPGDGGSHHECLFRLVVFRPFVDEVCVGKIVKSTPEGIQVSLGNFyYDIFIPAYWMLRPSRYSEKLGLWVWS 132
                  9*********************************************9873579**************************************************98459******************999994 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0098
    TIGR00448 134 kvldvgdkvrarivalslkerkpekskieLt 164
                    ++ g  +r++i ++ + ++ +  + ++ t
  MMETSP1061-20121228|18665_1 199 FEMELGAEIRFKIKSIHFTQVTNTAKGVQAT 229
                  3467899***********9999866665544 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   7.2    0.0028       3.8     204     303 ..     136     235 ..     116     246 .. 0.40

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0028
    TIGR01651 204 gddeesedeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaetpgeakrpd.rpftdlneevdykvftsaf 303
                  g+++e+e+ +d++ d+  ed+ + + + e++   +++ +e+e  e+ +++++++  e ++++++ e +  ae   + k  +    t++++ v+    t+a+
  MMETSP1061-20121228|18665_1 136 GNEDEDEEGDDNNGDNAMEDNPHTNIKMEDDAASGTNVKEEE-KESLSDETKMDEEEEEEEGEHFEMELGAEIRFKIKSIHfTQVTNTAKGVQATTTTTAH 235
                  333333333333333333333333333332222222222211.1111222222222222333333333333333333322212334444555555555555 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   6.3    0.0037         5     323     429 ..     143     245 ..     131     266 .. 0.47

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0037
    TIGR02442 323 ekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalep.agkifrvkllavskarargasGrrsktrsdkrgryvkaernr 429
                  e + ++ + +a +d+ +++ + e+++  s+++ +  ++++++ ++++k ++eee+e+ e++++e  a+  f++k++ +++  +++a G +  t+++++++ +++e ++
  MMETSP1061-20121228|18665_1 143 EGDDNNGD-NAMEDNPHTNIKMEDDA-ASGTNVK--EEEKESLSDETKMDEEEEEEEGEHFEMELgAEIRFKIKSIHFTQV-TNTAKGVQATTTTTAHSQPIRKESEE 245
                  11111111.11111111111112222.2222222..222222222222222222222334444441444578888888876.78888888777777777777666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1461.31
//
Query:       MMETSP1061-20121228|18666_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 538.96
//
Query:       MMETSP1061-20121228|18667_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.52
# Mc/sec: 606.64
//
Query:       MMETSP1061-20121228|18668_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-73  243.6   1.2      3e-42  142.8   0.0    2.2  2  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    6.3e-25   85.8   0.6      9e-24   82.0   0.1    2.5  2  TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
    1.2e-24   84.8   0.0    1.7e-24   84.3   0.0    1.2  1  TIGR02143 trmA_only: tRNA (uracil-5-)-methyltransferase
    1.2e-05   22.8   0.1      2e-05   22.0   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    4.6e-05   20.7   0.0      0.017   12.2   0.0    2.4  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00014   19.1   0.0    0.00024   18.3   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    0.00018   18.8   0.0    0.00045   17.5   0.0    1.6  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
    0.00033   18.0   0.0    0.00059   17.2   0.0    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
      0.003   14.5   0.0     0.0053   13.7   0.0    1.3  1  TIGR00536 hemK_fam: methyltransferase, HemK family
     0.0036   15.4   0.0     0.0082   14.3   0.0    1.5  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0091   13.3   0.1      0.016   12.5   0.1    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
  ------ inclusion threshold ------
      0.032   11.7   0.0       0.06   10.8   0.0    1.4  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family
      0.041   11.4   0.0       0.08   10.5   0.0    1.4  1  TIGR00537 hemK_rel_arch: putative methylase


Domain annotation for each model (and alignments):
>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.1   1.2e-31   3.7e-29      10     168 ..     187     354 ..     179     375 .. 0.87
   2 !  142.8   0.0   9.4e-45     3e-42     252     432 .]     409     609 ..     399     609 .. 0.84

  Alignments for each domain:
  == domain 1    score: 99.7 bits;  conditional E-value: 1.2e-31
    TIGR00479  10 kvngkvvFvpnalPeekvevrvtkvkkqyaearvvkireespeRtepkCpvfekCGGCqlqHlayelqlrskqeqvidller..lgklks.ekievkpti.medawnYRnka....rlslsrsksgkqlqa.GfykkgshdivdvkqClvqepklnkllpkvkailen 168
                  k ++ v+ vp +l +e v+v + +  k ++ea +v++ ++speR++pkC  +  CGGCq qH++++ q++ k + v ++l +  ++++++ e ++v pt+  ++ ++YR k     + ++++ +++ +lqa Gf++    ++vdv +C ++ p++n+  +++++ l +
  MMETSP1061-20121228|18668_1 187 KERQWVIMVPHVLVGETVRVSIFRNMKGHSEADLVQVVDPSPERVQPKCSLAGTCGGCQYQHMSIKAQRKWKTKHVEEVLMQqnIEGYNTpELLDVLPTSgTDEVYGYRSKItphyQAPIEKPDGTYELQAvGFQRSSNRNLVDVPECFIAMPAINEKYKEIRERLHD 354
                  5667899***********************************************************************986522566655277899999999********973433689999999*9999669******************************99876 PP

  == domain 2    score: 142.8 bits;  conditional E-value: 9.4e-45
    TIGR00479 252 eviyellgdvklelsardFfqvnseqteklvdraleale....l..qgeekvvDaycGvGtftlplAkqaksvvgvevvkesvekakrnAelngianveflageleevlpklsk...ek......isad....kvllDPpRkGcaaevlreiiklkpkrivYvsCnPatLarDlevLlkeG.YkiekvqvvDmFPhtaHvE 432
                  +++  +++ +k++  a +Ffq n  +   +vd + ea+        ++  k++D ycG G f+l  A+q    vg+e + +++e+a  nA  ngi+n +f+a+ +e  ++  ++   ++      +++d    +v++DPpRkGc +e+l+++    p+rivY+sC Pat arD++ +++ G Y+i+ vq+ D+FP+t H+E
  MMETSP1061-20121228|18668_1 409 QYMTTTIKRLKFRYIAGNFFQNNNYVVPLMVDAVVEAATkpvaAtgKPPSKLIDCYCGSGLFALSAASQFDLCVGIELNDKAIEEATENAVSNGITNCQFMAASAEAIFTSPPEitiAGfkqqrvQTFDrqetVVIVDPPRKGCSEEFLKQLYDYSPQRIVYMSCGPATQARDAKGIVEVGgYEITSVQPFDLFPQTKHIE 609
                  567778999***********************9999875222121145589*******************************************************99875432111331111113454444479****************************************8887766*****************98 PP

>> TIGR02085  meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.12        37       7      38 ..     238     269 ..     234     309 .. 0.81
   2 !   82.0   0.1   2.9e-26     9e-24     209     373 ..     426     615 ..     403     616 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.12
    TIGR02085   7 akrcrscqllekpiseqltekqadlkellasd 38 
                  a+ c  cq+ +  i  q   k+++++e+l+++
  MMETSP1061-20121228|18668_1 238 AGTCGGCQYQHMSIKAQRKWKTKHVEEVLMQQ 269
                  688***********************999852 PP

  == domain 2    score: 82.0 bits;  conditional E-value: 2.9e-26
    TIGR02085 209 sffqtnpkva....aqlyatarqwvre..levkelwdlfcGvGGfglhcaapdikltGieieseaiaaakrsakelGlenlsfaalds............akfaeaka....dvpelvlvnpprrGiGkelsdyleqlapkfilysscnaqtmakd...iaelasykilrvqlfdmfphtshyevltllv 373
                  +ffq n  v     + +  +a + v+    ++ +l d +cG G f+l  a++     Gie++ +ai  a + a   G++n +f a  +            a f +++      +  +v+v+ppr+G  +e+ ++l   +p+ i+y sc + t a+d   i e+ +y+i  vq fd+fp+t+h e l++++
  MMETSP1061-20121228|18668_1 426 NFFQNNNYVVplmvDAVVEAATKPVAAtgKPPSKLIDCYCGSGLFALSAASQFDLCVGIELNDKAIEEATENAVSNGITNCQFMAASAeaiftsppeitiAGFKQQRVqtfdRQETVVIVDPPRKGCSEEFLKQLYDYSPQRIVYMSCGPATQARDakgIVEVGGYEITSVQPFDLFPQTKHIESLVIFE 615
                  688877555311114444455555544126899***************999988899**************************98766212211211111233344331121234589**********************************987744478999**********************9976 PP

>> TIGR02143  trmA_only: tRNA (uracil-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   5.5e-27   1.7e-24     161     352 .]     414     617 ..     403     617 .. 0.83

  Alignments for each domain:
  == domain 1    score: 84.3 bits;  conditional E-value: 5.5e-27
    TIGR02143 161 agrelvyrqvensftqPnaavnekmleWalevlee.......skgdllelycGnGnfslalaekfekvlateiakssveaaqanieankidnvqiirlsaeel.tealkkkrefrrlkgidlksyefetifvdPPraGldketvklvkky..erilyiscnPetlkenleelset..hrverlalfdqfpythhlesGvllekk 352
                  + ++l++r++ + f q n  v   m++ ++e++ +         + l++ ycG G f+l+ a++f+  +  e+   ++e a  n  +n i+n q++  sae + t+  +   + ++ + ++  + +   ++vdPPr G  +e +k + +y  +ri+y+sc P t + + + ++e   ++++ +  fd fp t+h+es v++ekk
  MMETSP1061-20121228|18668_1 414 TIKRLKFRYIAGNFFQNNNYVVPLMVDAVVEAATKpvaatgkPPSKLIDCYCGSGLFALSAASQFDLCVGIELNDKAIEEATENAVSNGITNCQFMAASAEAIfTSPPEITIAGFKQQRVQTFDRQETVVIVDPPRKGCSEEFLKQLYDYspQRIVYMSCGPATQARDAKGIVEVggYEITSVQPFDLFPQTKHIESLVIFEKK 617
                  568899*********************9999765422111104459*******************************************************861444444444444445555555667899****************9995569****************998853389********************99986 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   6.5e-08     2e-05      75     147 ..     441     513 ..     434     545 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 6.5e-08
    TIGR03534  75 lLveaaleel..kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdl 147
                  ++veaa + +  + k++ k++D  +GsG  al+ a++++ +  ++++++++A++ a +Na ++g+++++f+ ++ 
  MMETSP1061-20121228|18668_1 441 AVVEAATKPVaaTGKPPSKLIDCYCGSGLFALSAASQFDLC--VGIELNDKAIEEATENAVSNGITNCQFMAASA 513
                  466666666666666689*******************9876..789*********************99999875 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0047       1.5      18      81 ..     248     322 ..     245     337 .. 0.72
   2 !   12.2   0.0   5.4e-05     0.017      38     100 ..     455     516 ..     420     524 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0047
    TIGR01934  18 llSlGldrlWkkkavkkieee......keekvlDv..atGtGdlaielakkae...akvtgvDlseemLevakkk 81 
                   +S+  +r+Wk+k v+++  +      ++ ++lDv   +Gt ++    +k ++   a +   D + e+ +v+ ++
  MMETSP1061-20121228|18668_1 248 HMSIKAQRKWKTKHVEEVLMQqniegyNTPELLDVlpTSGTDEVYGYRSKITPhyqAPIEKPDGTYELQAVGFQR 322
                  69**************99888788888888999994446776666555555445555555555555555555555 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 5.4e-05
    TIGR01934  38 ekeekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakekeeanvefieadaeeL 100
                  + ++k++D  +G+G +a++ a +    ++g+ l+ + +e a++ a ++  +n +f++a+ae++
  MMETSP1061-20121228|18668_1 455 KPPSKLIDCYCGSGLFALSAASQF-DLCVGIELNDKAIEEATENAVSNGITNCQFMAASAEAI 516
                  3789*************9999988.56*****************99997789********976 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   7.5e-07   0.00024      50     110 ..     457     517 ..     408     524 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 7.5e-07
    TIGR01983  50 glkvlDvGcGgGllseslarlgaevtgiDlseelievAklhakkdplkkieyelksveela 110
                    k++D  cG+Gl++ s a +    +gi+l +++ie A++ a ++++++ ++ ++s+e + 
  MMETSP1061-20121228|18668_1 457 PSKLIDCYCGSGLFALSAASQFDLCVGIELNDKAIEEATENAVSNGITNCQFMAASAEAIF 517
                  5799*************9999989******************************9999875 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.4e-06   0.00045      20      77 ..     460     515 ..     450     527 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.4e-06
    TIGR00091  20 vleiGcGkGrfliklAkqnpeknflGiEiekpivlkainkaeklglkNlkvlcgdakk 77 
                  +++  cG+G f +  A q+  ++++GiE++++ + +a ++a  +g++N + +   a+ 
  MMETSP1061-20121228|18668_1 460 LIDCYCGSGLFALSAASQF--DLCVGIELNDKAIEEATENAVSNGITNCQFMAASAEA 515
                  5788899999999999998..69***************************99988865 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.9e-06   0.00059     161     210 ..     458     506 ..     450     523 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.9e-06
    TIGR00406 161 kkviDvGcGSGiLsiaalklgaakvvavDiDplavesarkNlelNqvsdl 210
                   k+iD  cGSG+ +++a+ +  +  v+++++  a+e+a +N+  N++++ 
  MMETSP1061-20121228|18668_1 458 SKLIDCYCGSGLFALSAASQ-FDLCVGIELNDKAIEEATENAVSNGITNC 506
                  689************99986.68899*********************975 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.7e-05    0.0053      98     169 ..     439     508 ..     418     522 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.7e-05
    TIGR00536  98 teelvekaleslisqepl.khilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleervel 169
                  ++++ve+a + +    +   +++D  +GsG  al+ A+++      ++ +  +a++ a eNa  +++ +  ++
  MMETSP1061-20121228|18668_1 439 VDAVVEAATKPVAATGKPpSKLIDCYCGSGLFALSAASQFD--LCVGIELNDKAIEEATENAVSNGITN-CQF 508
                  566777766666655433399*******************9..6689******************9996.555 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   2.6e-05    0.0082      20      96 ..     457     527 ..     451     544 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.6e-05
    TIGR02469  20 gdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdapkaeedsleeadavfvgG 96 
                   ++l+D  +G+G  +++aa ++  +   +ie n +a+e  +eN+  +g+ n + + ++a+       + +  + + G
  MMETSP1061-20121228|18668_1 457 PSKLIDCYCGSGLFALSAASQFDLCV--GIELNDKAIEEATENAVSNGITNCQFMAASAEA----IFTSPPEITIAG 527
                  56899******************965..*************************99986652....233444455555 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1     5e-05     0.016      56     112 ..     458     513 ..     437     518 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 5e-05
    TIGR02021  56 kkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenveFevndl 112
                  +k++D  CG+Gl++ + A +    +++++ +k +e+a ++a ++    n +F   + 
  MMETSP1061-20121228|18668_1 458 SKLIDCYCGSGLFALSAASQFDLCVGIELNDKAIEEATENAVSNG-ITNCQFMAASA 513
                  69*************************************999988.58999987765 PP

>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00019      0.06      54      96 ..     458     499 ..     455     562 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00019
    TIGR00095  54 akvLdlfaGsgalglEALsRgakkvvfveqdkkvaktlkeNls 96 
                  +k++d++ Gsg ++l A s +++ +v +e + k+++   eN  
  MMETSP1061-20121228|18668_1 458 SKLIDCYCGSGLFALSAAS-QFDLCVGIELNDKAIEEATENAV 499
                  689**************98.8**************99998864 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00025      0.08      21      69 ..     458     506 ..     451     519 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00025
    TIGR00537  21 ddvleiGaGtGlvairlkekgkkivatdinPfavkllkenaklnnveld 69 
                   ++++   G+Gl a  ++ + +  v++++n  a+ ++ ena+ n++   
  MMETSP1061-20121228|18668_1 458 SKLIDCYCGSGLFALSAASQFDLCVGIELNDKAIEEATENAVSNGITNC 506
                  55788889**********************************9997544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 2483.79
//
Query:       MMETSP1061-20121228|18670_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 486.99
//
Query:       MMETSP1061-20121228|18671_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-67  224.8   1.4      3e-67  223.9   1.0    1.4  1  TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase
    8.3e-57  189.6   0.1    1.5e-56  188.8   0.0    1.4  1  TIGR00505 ribA: GTP cyclohydrolase II


Domain annotation for each model (and alignments):
>> TIGR00506  ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.9   1.0   1.4e-70     3e-67       4     204 .]     440     638 ..     438     638 .. 0.95

  Alignments for each domain:
  == domain 1    score: 223.9 bits;  conditional E-value: 1.4e-70
    TIGR00506   4 rveealealkkgeivlvlDdedREnEgDlivaaekvtpekiallakdasGliCvalteeiaekldlplmvdvlesaseadikydeksavsievakr..tttGisaadRaltiraladvvkegkdfrrPGHvflLrAadggvlkRaGhtEasvdLaelaglkpvavicEllnd..dGtmlrkeelveyakkhdlkllsiedlieyr 204
                  +ve+a++a+k g++v+v+Dd +REnEgDli+aa+ +tpe +a++++++sG+iCva+  +++++l lp m +++e+ ++      ++++v++++ ++  +ttGis +dRa t++ lad+++++ df+rPGH+f+LrA +ggvl+R GhtEa+vdLa lag + ++++cE++ +    +m+r +e++++ak+h+l l si dli+yr
  MMETSP1061-20121228|18671_1 440 SVEDAIAAVKDGKMVVVVDDMNRENEGDLIMAADACTPEDMAFIVRYSSGVICVAMDGDRMDQLKLPQMITNNEDPKN------TAFTVTVDATAEhgITTGISSVDRAKTMNLLADMSTTAADFNRPGHIFPLRAVEGGVLARDGHTEAGVDLAYLAGRSRAGILCEIVSEekPTEMMRLPEMKRFAKEHGLVLTSIVDLIQYR 638
                  79**********************************************************************999998......57888887643335************************************************************************9976689***************************7 PP

>> TIGR00505  ribA: GTP cyclohydrolase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.8   0.0   7.2e-60   1.5e-56       2     189 ..     176     377 ..     175     378 .. 0.90

  Alignments for each domain:
  == domain 1    score: 188.8 bits;  conditional E-value: 7.2e-60
    TIGR00505   2 tvaeaklptkyGklkivgfkekedd................keelllvkadisaeedvlvrihseCltGdalfslrCdCGeqleralkliakegkGviiylrqeGrgiGlinklkayalqdkGadtveanlelgfkaderdfslaaeiledlgvkkvrlltnnPekieelkkaglkvvervpl.iveenkenekyletkkekmGh 189
                   vae+ lpt+ G+++  +++ k++                  +    v++ +  ++ v vrih +Clt +++ s+rCdC +ql++alk++a+ g G iiy++qeGrgiGl nk+ ayalqd G dtv+anl+lgf++d r+++   +il+d+++++++l+tnnP+k+++l + g+kv + vp+ + ++n++n++y+e+k e+m h
  MMETSP1061-20121228|18671_1 176 FVAETALPTDMGQFRLRAYRIKAESvpneytgrepsviyaaDKSPFGVEGAL--KQGVHVRIHDQCLTSEVFGSKRCDCSDQLKMALKHVAEHG-GAIIYMQQEGRGIGLANKVAAYALQDVGLDTVDANLHLGFPEDCRNYGSIPAILHDMKIGSIQLMTNNPRKVNRLRELGVKVDDTVPMvVATTNRYNHRYMEAKHERMAH 377
                  578999**************99999999999965544444222223333333..48899*******************************9988.****************************************************************************************445679**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 3040.46
//
Query:       MMETSP1061-20121228|18675_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-25   88.0   1.8    3.2e-25   87.1   1.2    1.3  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   1.2   7.9e-29   3.2e-25      13     148 ..     111     241 ..     104     243 .. 0.84

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 7.9e-29
    TIGR00401  13 veklfrkidgvektkvGyln...gktenPtyee.vCsgdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqesakykkkivteiekaenfyeaeeyhqqylkkn 148
                   ++ f++ +g+ +t+vGy +    +t+nP+ ++    +  ++ae++++++++++ ++e++l++ffe++ P++        Gtqyrs+i++++++++ +ae+  ++  + ++y      ++e+a+nfy aeeyhq+y++k 
  MMETSP1061-20121228|18675_1 111 PQRDFDREEGILDTVVGYSGstsRNTDNPASQNpTYRNVQDYAEAIRISFNKDKWTYEQILELFFEMHYPSDPR----FAGTQYRSAIFYHTEDQKIMAEHACKKRGALGQYV-----SVEEASNFYRAEEYHQKYVEKQ 241
                  5789**************99444244555533312334479*****************************9864....479**************999999988888877776.....7899***************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1695.02
//
Query:       MMETSP1061-20121228|18674_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.0   5.6      0.023   11.4   3.9    1.3  1  TIGR03998 thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC
       0.17    8.2   1.2       0.23    7.8   0.9    1.1  1  TIGR00831 a_cpa1: Na+/H+ antiporter


Domain annotation for each model (and alignments):
>> TIGR03998  thiol_BshC: bacillithiol biosynthesis cysteine-adding enzyme BshC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   3.9   1.1e-05     0.023     384     470 ..     198     285 ..     182     321 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.1e-05
    TIGR03998 384 Leklqlsvee.laegveelkervleeqaeeeidalfeeakeqikaalkelkeelakvdatleklaekneakitkqvefLekrlerair 470
                  L++ + ++++ ++ +  ++k+++++e ++++++++ +  +e++k+ l ++ ++l++++a+le++   n+ k  +++++++++le++ +
  MMETSP1061-20121228|18674_1 198 LDDNEQTLYDtVSIDDLKEKHAIVKEAMQKQVETDGNITAEEQKQLLTQVSDRLETINADLEDAKAGNKPKKAEKLNNMKTKLEQRKA 285
                  555566777779999999*****************************************************************99865 PP

>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   0.9   0.00011      0.23     431     498 ..     222     290 ..     200     311 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00011
    TIGR00831 431 lvalqkveerla.veedvakellkeleervvelradgeekvesdlaeknlerrvrlavldakraavvdl 498
                  + a+qk +e  + ++ + +k+ll+++++r++ + ad+e+   ++  +k  +    ++ l++++a ++++
  MMETSP1061-20121228|18674_1 222 KEAMQKQVETDGnITAEEQKQLLTQVSDRLETINADLEDAKAGNKPKKAEKLNNMKTKLEQRKAMLTKI 290
                  567888777655599999*******************99888887777755566777788887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1651.75
//
Query:       MMETSP1061-20121228|18677_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1595.35
//
Query:       MMETSP1061-20121228|18673_1  [L=1078]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-42  142.3   0.0    6.2e-42  141.1   0.0    1.7  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J
      4e-06   24.1   0.0    1.2e-05   22.6   0.0    1.8  1  TIGR00478 tly: hemolysin TlyA family protein


Domain annotation for each model (and alignments):
>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.1   0.0     3e-45   6.2e-42       1     188 []      17     220 ..      17     220 .. 0.90

  Alignments for each domain:
  == domain 1    score: 141.1 bits;  conditional E-value: 3e-45
    TIGR00438   1 dkyykkakkekyrsrasfkllqlnekfklik.kGklvldlGaaPGGWsqvavekvgekGlviavdlqpvk..pienvdfirGdftdeevlekilervgdd.............kvdvvisdaaPnlsGirdidhlrsidlvelaldiakevlkekGnfvvkvfqGeeldeylkelrklfekvkvrkPeasrkrsaevyivakrf 188
                  dkyyk ak +++rsra+fkl q+n+++ l++ k ++vldl aaPGGW+qva+++ g +  +iavd++p+      n++ i Gd+t ++ +  i + + ++              vdvv+ d aPn+    d d     +l+  al  a++ l++ G+fv k+++ ++  ++   +++lf+ v + kP+asr++sae++ +++++
  MMETSP1061-20121228|18673_1  17 DKYYKLAKEQGLRSRAAFKLSQINRHYPLMHsKTNVVLDLCAAPGGWTQVAQRTCGPQTSIIAVDILPIRslGKRNITTIVGDITTDKCKADINRAIIEStangngrnnknegTVDVVLHDGAPNIGASYDKDAYMQTELAVHALRCATQHLRHMGSFVTKIYRSKDSASFQWVVKQLFREVSTFKPKASRQQSAEIFYICQGY 220
                  89**************************997367899*********************************66679**********999887766555333233345555555679***********************************************************************************999876 PP

>> TIGR00478  tly: hemolysin TlyA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   5.8e-09   1.2e-05      29      96 ..       2      70 ..       1      84 [. 0.86

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 5.8e-09
    TIGR00478 29 vnkkkvdkPsalvdkdakielvqeelfvsRggeKLkealeefev.dvknkivlDvGsStGGFtdcalqk 96
                 vn+ k +k +   dkd+  +l++e+   sR+ +KL ++ +++++ ++k ++vlD+ +  GG+t++a + 
  MMETSP1061-20121228|18673_1  2 VNDGKNNKRKKFHDKDKYYKLAKEQGLRSRAAFKLSQINRHYPLmHSKTNVVLDLCAAPGGWTQVAQRT 70
                 8889999999999*****************************9736899****************9764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1078 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       375  (0.0914188); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.13s 00:00:00.63 Elapsed: 00:00:00.51
# Mc/sec: 2789.89
//
Query:       MMETSP1061-20121228|18676_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-46  157.2   0.0    1.9e-26   90.6   0.0    2.2  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    8.7e-40  134.4   0.0      5e-23   79.1   0.0    2.1  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    9.6e-37  124.7   0.0    1.8e-19   67.8   0.0    2.5  3  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    7.6e-34  115.1   0.0    3.5e-18   63.4   0.0    2.1  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    8.6e-29   98.2   0.1    2.3e-20   70.4   0.0    2.7  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    1.7e-28   97.5   0.0    7.3e-14   49.2   0.1    2.2  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
      4e-28   95.9   0.1    1.2e-19   67.9   0.3    2.3  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    2.7e-25   86.5   0.0    1.5e-12   44.4   0.0    2.1  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    5.9e-20   68.8   0.1    1.1e-12   44.8   0.0    2.1  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    4.7e-10   36.5   0.0    5.9e-05   19.7   0.0    3.0  3  TIGR02316 propion_prpE: propionate--CoA ligase
  ------ inclusion threshold ------
      0.013   10.6   0.0       0.58    5.2   0.0    2.0  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.6   0.0     4e-21   1.5e-18       2     227 ..      85     329 ..      84     353 .. 0.75
   2 !   90.6   0.0   5.1e-29   1.9e-26     234     409 .]     392     558 ..     361     558 .. 0.87

  Alignments for each domain:
  == domain 1    score: 64.6 bits;  conditional E-value: 4e-21
    TIGR01733   2 YreLderanrlAraLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltdeel.aeelaeval.......eailleeleekaaedasaeeaaeak.................skpddlayviyTSGStGkPKgVlvehrslvnllaslarryel.....seedrvlqfsslaFDl.sveeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllella 227
                  Y+++ +++ +  + Lk+  gv++ d V+++ +  +e  +   a+    a+ vp+  ++ a  +++i++d+++++++++++   +++++++l       ++++l+ ++ ++   ++   +a  +                 ++++dla +iyTSG+tGkPKgV+++hr++v+ ++  +++ ++     +e++++l+f + a+    + e+++a+  G + ++ +       + ll++l+  +  tvl ++p+l++ + 
  MMETSP1061-20121228|18676_1  85 YEDFGNKVHECCALLKD-LGVKKFDKVGIISNNRYEWAMIAAATYSLNATLVPMYEAQLATDWRYIINDSSVSVIFCSTKEvFQRFSSEVLhttpsihSTLCLDAVDGEEYGYQE---TA--NrtidnllsppqssmltpPDEEDLANLIYTSGTTGKPKGVELTHRNIVSNIEGGRSMSQNpfdllDESSKTLAFLPWAHSYgQTVELWMAMSFGSSCAICRGI-----PFLLEDLQLVK-PTVLFAVPTLYNKIY 329
                  77777888888899998.56********************************************************986641445554444555555523333322222222211...11..13344567777778899989999****************************9888766656677899**********9987257899****999555544332.....23555555555.666666666666655 PP

  == domain 2    score: 90.6 bits;  conditional E-value: 5.1e-29
    TIGR01733 234 lkslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldealrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKi.rGfRielgEieaalaelpgveeavv 409
                    +lr+ +++G a++ ++++ +  +++ + ++ +YG TEt+ ++t+++ s+ +       ++G pl++v++y++d++++ +p+g  GE++ +G+ v+rGY+n+ e t e     p  ks   r+++TGDl+ ++ +G ++  GR+ +q K+ +G  + ++ ie+a+   + ++++vv
  MMETSP1061-20121228|18676_1 392 GGNLRYGCVAGAACPIDVLQFMD-SIG-IPVLEGYGLTETSPIITLNSPSKRS-----IGSVGLPLEGVEVYIIDKDGNILPPGNEGEICCAGPNVMRGYYNNMEATDEVISVAPDGKS---RMFHTGDLGMMDTEGWIKVTGRIKEQYKLeNGKYVVPAPIENAIGVSRFISQVVV 558
                  4489999*******988887766.565.89************99987655543.....3469************************************************988886654...9***************************966999*******99999988888887 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.1   0.0   1.4e-25     5e-23      24     262 ..      81     325 ..      53     343 .. 0.83
   2 !   53.2   0.0     1e-17   3.8e-15     278     456 ..     395     565 ..     380     588 .. 0.82

  Alignments for each domain:
  == domain 1    score: 79.1 bits;  conditional E-value: 1.4e-25
    TIGR03098  24 rtltyaaLseevkalasglkalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllv.tskerld.aledalakchdlrtlilvdepekasekkagaevlsweklkaleeaaakvdvidddlaailYtsGstGrPkgvvlshrnlv...aGaksvaqy..LelredDrllavLPlsfDyGln.qlttaflvGatvvlldyllpkDvlkavekekitglaavPPlW 262
                    l+y+   ++v+++ ++lk lg+k+ ++v+i+ + r e  +   a+  + +  vp+     a+   yi++D++v ++  ++ke ++ + +++l + +++++ + +d+ + ++    ++   + ++l +  ++   ++  ++dla ++YtsG tG+Pkgv l+hrn+v   +G +s++q     l e  + la LP +  yG+   l  a++ G+++ +   +    +l+ ++  k t l avP l+
  MMETSP1061-20121228|18676_1  81 DYLNYEDFGNKVHECCALLKDLGVKKFDKVGIISNNRYEWAMIAAATYSLNATLVPMYEAQLATDWRYIINDSSVSVIFcSTKEVFQrFSSEVLHTTPSIHSTLCLDAVDGEEYGYQETANRTIDNLLSPPQSSMLTPPDEEDLANLIYTSGTTGKPKGVELTHRNIVsniEGGRSMSQNpfDLLDESSKTLAFLPWAHSYGQTvELWMAMSFGSSCAICRGIP--FLLEDLQLVKPTVLFAVPTLY 325
                  4799***********************************988888888999********999*************987615667776145788999999*********9999999888999999*******999999******************************73336999999853134678889************9747889999999987654332..244444555555666666665 PP

  == domain 2    score: 53.2 bits;  conditional E-value: 1e-17
    TIGR03098 278 lRyltnsGGalpkavlarlRkllpeaklylmYGLteafRstyLd.PeevdrrPdsiGkaipnaevlvlredGsecapeeeGelvhrGalvakGYWndpektaerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemikt.sGyRvsPteveevllatglvaeavvlgvpdpe 456
                  lRy   +G a p  vl+ + +      +   YGLte     +L+ P    r  +s+G  +  +ev ++ +dG+   p++eGe+  +G+ v +GY+n+ e+t e+   +p        + +  + GDl+ +D eG++ + gR  e  k   G  v P  +e+++  +  ++++vv g ++p 
  MMETSP1061-20121228|18676_1 395 LRYGCVAGAACPIDVLQFMDSI--GIPVLEGYGLTETSPIITLNsPS--KRSIGSVGLPLEGVEVYIIDKDGNILPPGNEGEICCAGPNVMRGYYNNMEATDEVISVAPD------GKSRMFHTGDLGMMDTEGWIKVTGRIKEQYKLeNGKYVVPAPIENAIGVSRFISQVVVCGANKPY 565
                  6666666666666655555443..22345569****98877775144..57889**************************************************999988......55667899******************999996379*************************87764 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   6.5e-18   2.4e-15       2     223 ..      85     336 ..      84     354 .. 0.79
   2 !   67.8   0.0   4.7e-22   1.8e-19     225     382 ..     394     561 ..     378     565 .. 0.84
   3 ?   -2.6   0.0       1.1     4e+02      31     427 ..     602     626 ..     581     650 .. 0.60

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 6.5e-18
    TIGR01923   2 faeldkeaarlAkalkaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslleekedlqaisldeleaeae.....................aeevs.........lsasfsldkiatlifTSgstGkpKavvqtfrnhyasavg....saeklg.ftesdnWLlsLPlyHvsGlsi.lfrallegatlkivdkfaaeqllesianekvthiSlVptqLkrlleesssep 223
                  + ++ ++++ +   lk  +v+k d v+++++n+ e +++  a + l+++ +++ ++  + +   ++++++v++++++++   +  + +  l+ +   +                          +         + +  + +++a li+TSg+tGkpK+v  t+rn++ +  g    s++ +  ++es + L  LP  H  G+++ l+ a+  g + +i        lle+++  k t + +Vpt+ +++ +  ++++
  MMETSP1061-20121228|18676_1  85 YEDFGNKVHECCALLKDLGVKKFDKVGIISNNRYEWAMIAAATYSLNATLVPMYEAQLATDWRYIINDSSVSVIFCSTKEVFQR-FSSEVLHTTPSIHStlcldavdgeeygyqetanrtI---DnllsppqssMLTPPDEEDLANLIYTSGTTGKPKGVELTHRNIVSNIEGgrsmSQNPFDlLDESSKTLAFLPWAHSYGQTVeLWMAMSFGSSCAICRGIP--FLLEDLQLVKPTVLFAVPTLYNKIYDTVQNKM 336
                  7788899999999**************************************9998888888999***********987654222.444444444333334556667777777666555550...05555554448888899****************************9987443233445424688899************99899*************966..9*********************9998877653 PP

  == domain 2    score: 67.8 bits;  conditional E-value: 4.7e-22
    TIGR01923 225 slrkiLLGGsaipaplieeaqekglpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd.....keghgeilvkganlmkgYlekgelteav...eeqG...wlktgDlgeldgegfllvldRrddli.ISGGENiypeeiEkvlkslpevqeavvvpk 382
                  +lr     G+a p ++++     g+p+ ++yG TEt s ++tl+ + ++   +svG pl++ve+ i  +d     + + gei  +g+n+m+gY+++ e+t+ v     +G    ++tgDlg +d+eg + v++R ++ + +  G  + p+ iE+++  +  ++++vv ++
  MMETSP1061-20121228|18676_1 394 NLRYGCVAGAACPIDVLQFMDSIGIPVLEGYGLTET-SPIITLNSPSKRS-IGSVGLPLEGVEVYIIDKDgnilpPGNEGEICCAGPNVMRGYYNNMEATDEVisvAPDGksrMFHTGDLGMMDTEGWIKVTGRIKEQYkLENGKYVVPAPIENAIGVSRFISQVVVCGA 561
                  566666789**************************8.5677787777764.899***********96666789988899*****************777654312233343338********************87654399*************************987 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 1.1
    TIGR01923  31 aenslelvllllallllgveiallntrLtekelttqlkelkvellltdslleekedlqaisldeleaeaeaeevslsasfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWLlsLPlyHvsGlsilfrallegatlkivdkfaaeqllesianekvthiSlVptqLkrlleesssepeslrkiLLGGsaipaplieeaqekglpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvddkeghgeilvkganlmkgYlekgelteaveeqGwlktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeDsefGqvPvayikseseiskakltaylkeklaKyKvPiafekld 427
                  ++n+++                                                                                                                                                                                                                                                                                                                                                                                     + + l+Ky +P  + ++ 
  MMETSP1061-20121228|18676_1 602 IDNEIR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCCSDLKKYEIPHRWAFVA 626
                  444444....................................................................................................................................................................................................................................................................................................................................................................................4555566666665555543 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.4   0.0   9.5e-21   3.5e-18      29     274 ..      81     336 ..      65     357 .. 0.72
   2 !   49.6   0.0   1.4e-16   5.4e-14     273     439 ..     388     560 ..     379     594 .. 0.86

  Alignments for each domain:
  == domain 1    score: 63.4 bits;  conditional E-value: 9.5e-21
    TIGR02262  29 sslsygeleaevrrvaaalrrlGvkreervllvlldtvdfpivflG..airaGivpvalntlltaddyaylledsrarvvlvse.e.llpvlkevlaklpdleklvvvgak...pagekqlaellate..seqekaaatkad..dpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlglreddvvfsaak.lff.....ayGlGnalifplsvGatavlmaerptpdavfdrlrrvkptifygvptlyaamladpelka 274
                    l y+++ ++v+ ++a+l+ lGvk+ ++v ++  +  ++ ++     +++a +vp+    l  a d++y+++ds   v++ s  e +     evl  +p+++  +   a    + g ++ a+   ++  s+ +++  t +d  d a  +y+sG+tG+pkGv  +h n+    e   ++ +     d+   ++k l f     +yG    l + +s G+++ +    p    +++ l+ vkpt++++vptly  +    + k 
  MMETSP1061-20121228|18676_1  81 DYLNYEDFGNKVHECCALLKDLGVKKFDKVGIISNNRYEWAMIAAAtySLNATLVPMYEAQL--ATDWRYIINDSSVSVIFCSTkEvFQRFSSEVLHTTPSIHSTLCLDAVdgeEYGYQETANRTIDNllSPPQSSMLTPPDeeDLANLIYTSGTTGKPKGVELTHRNIVSNIEG--GRSMSQNPFDLLDESSKtLAFlpwahSYGQTVELWMAMSFGSSCAICRGIP---FLLEDLQLVKPTVLFAVPTLYNKIYDTVQNKM 336
                  457899999*******************************9987651257888888765544..668**************9952425566678889999888777544432224566666665544422344445555555226899******************998776664..555555555544333331222222225777777888888898888776655...58999****************99877655554 PP

  == domain 2    score: 49.6 bits;  conditional E-value: 1.4e-16
    TIGR02262 273 kaedekrlrlctsaGealpeevGkrwkarfGvdildGvGstellhiflsnlpddvkyGtsGkpvpGyrlrlvddggedvadgevGellvsgpssaagywnnreksratfe....G..ewtrsGdkyvrnddGsytyaGrtddllkv.sGiyvspfevesaliaheavleaavvg 439
                  + +   +lr  + aG a p +v  ++    G+ +l+G G te   i   n p +   G+ G p++G ++ ++d+ g++   g+ Ge+   gp    gy+nn e + +       G     ++Gd  + + +G    +Gr  + +k+  G yv p  +e+a+     + +  v g
  MMETSP1061-20121228|18676_1 388 RDRFGGNLRYGCVAGAACPIDV-LQFMDSIGIPVLEGYGLTETSPIITLNSPSKRSIGSVGLPLEGVEVYIIDKDGNILPPGNEGEICCAGPNVMRGYYNNMEATDEVISvapdGksRMFHTGDLGMMDTEGWIKVTGRIKEQYKLeNGKYVVPAPIENAIGVSRFISQVVVCG 560
                  55557789*************9.57999****************************************************************************998774222231146789***********************8569**********986555555555544 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   4.3e-09   1.6e-06     140     170 ..     220     250 ..      58     260 .. 0.89
   2 !   70.4   0.0   6.2e-23   2.3e-20     319     485 ..     446     628 ..     421     643 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4.3e-09
    TIGR01734 140 keddnyyiiytsGstGkPkGvqishdnLvsf 170
                  +e+d   +iytsG+tGkPkGv++ h n+vs 
  MMETSP1061-20121228|18676_1 220 DEEDLANLIYTSGTTGKPKGVELTHRNIVSN 250
                  57888899********************985 PP

  == domain 2    score: 70.4 bits;  conditional E-value: 6.2e-23
    TIGR01734 319 iGfakpdvnlfivdeeGeklsegekGeivivGdsvskGylnnpekteeaffea..egkrayrtGDagtieddgllfyqGrlDfqikl.nGyrieLedieanlkkskyikeavvvPkynkdekveaLiaavvake...........edfekelkltkaikkeLk...kilmeymiPrkfiykdkl 485
                  +G+   +v+++i+d++G+ l+ g++Gei  +G+ v +Gy nn e t+e+   a   + r ++tGD g+++ +g + + Gr+  q kl nG  +    ie+ +  s++i + vv    nk  +v+ ++    + +            ++++e ++   i +e+    + l +y iP+++ +   +
  MMETSP1061-20121228|18676_1 446 VGLPLEGVEVYIIDKDGNILPPGNEGEICCAGPNVMRGYYNNMEATDEVISVApdGKSRMFHTGDLGMMDTEGWIKVTGRIKEQYKLeNGKYVVPAPIENAIGVSRFISQVVVCGA-NKPYNVALIVPDWATIRqelecddkvsdIEIANEKRVKVLIDNEIRmccSDLKKYEIPHRWAFVAPF 628
                  67777899*****************************************97652145689***************************6688888899***********99777665.5999999888543333211344322211122233333333445554222346677777777776655 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.0   0.0   1.8e-15   6.8e-13      17     264 ..      46     296 ..      34     323 .. 0.77
   2 !   49.2   0.1     2e-16   7.3e-14     317     442 ..     400     529 ..     392     563 .. 0.77

  Alignments for each domain:
  == domain 1    score: 46.0 bits;  conditional E-value: 1.8e-15
    TIGR03208  17 glwrdrtinddldaavarapdkpalvalrvesgavrrlsyreldalvdriavglarlgvgrgdvvslqlpnrwefvalylacarigavlnplmpifrerelsfmlkfadskvlvvp..ksfrgfdhaamarelqsklpalrqvvvvdg...dgdddfdallvtaerdddpdaaailrgdrlspddvtqliytsgttgepkgvmhtantllsnilayaer....le.lgegdvilmaspmahqtgfmyglmlplvlras 264
                  gl + +t+ +   +a +    +p   +++  +++   l y ++  +v+     l+ lgv++ d v +   nr+e ++++ a   + a+l p+       +  ++++ +   v+     ++f++f  + +     +  p++   + +d+   +     ++   t +   +p+ +++l+   +  +d++ liytsgttg+pkgv  t   ++sni          ++ l e+   l+  p ah  g +  l + + +++s
  MMETSP1061-20121228|18676_1  46 GLLEFKTLYELQSRACEVYSKNPIYGTYNETTSKFDYLNYEDFGNKVHECCALLKDLGVKKFDKVGIISNNRYEWAMIAAATYSLNATLVPMYEAQLATDWRYIINDSSVSVIFCStkEVFQRFSSEVL-----HTTPSIHSTLCLDAvdgEEYGYQETANRTIDNLLSPPQSSMLTP--PDEEDLANLIYTSGTTGKPKGVELTHRNIVSNIEGGRSMsqnpFDlLDESSKTLAFLPWAHSYGQTVELWMAMSFGSS 296
                  55666666666667777777778888888899999999********************************************************9999******9987777665431146777765544.....45566666555554200444445666677788889998999875..6679*****************************754322001133256777788888888888888888777766655 PP

  == domain 2    score: 49.2 bits;  conditional E-value: 2e-16
    TIGR03208 317 cagapipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevkvidadgaklsagevgrllvraasnfggylkrph....lnavdaeg...wfdtgdlafldaegyiriagrskdv 442
                   aga  p  ++ +  +++g+ ++  +g+te+  +  + ++  ++++  + glpl gvev +id dg+ l++g+ g++   +   + gy    +    + +v  +g    f tgdl ++d+eg+i+++gr k+ 
  MMETSP1061-20121228|18676_1 400 VAGAACPIDVL-QFMDSIGIPVLEGYGLTETSPI--ITLNSPSKRSIGSVGLPLEGVEVYIIDKDGNILPPGNEGEICCAGPNVMRGYYNNMEatdeVISVAPDGksrMFHTGDLGMMDTEGWIKVTGRIKEQ 529
                  47887776665.67899*************9875..55667788999999**************************************986541111556767774457********************9974 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   2.8e-09   1.1e-06     191     300 ..     221     328 ..     201     339 .. 0.88
   2 !   67.9   0.3   3.3e-22   1.2e-19     319     481 ..     400     565 ..     386     569 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 2.8e-09
    TIGR03205 191 addvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfdvaavlrdieekratvfpgvptmwial 300
                   +d+a l yt gttg pkg  lth n+ s +       ++     ++  + ++ lp  h y  tv l  ++  g   ++ +   +  +l d++  + tv+  vpt++  +
  MMETSP1061-20121228|18676_1 221 EEDLANLIYTSGTTGKPKGVELTHRNIVSNIEGGRSMSQNPFDLLDESSKTLAFLPWAHSYGQTVELWMAMSFGSSCAICRG--IPFLLEDLQLVKPTVLFAVPTLYNKI 328
                  4699**************************9998888887778888899**************************9999875..67899****************98665 PP

  == domain 2    score: 67.9 bits;  conditional E-value: 3.3e-22
    TIGR03205 319 sggaplpvevaklferkvglklksgwgmtetcspgtghplegpdkpgsiglmlpgieldvvslddpkkvlppgevgelrirgpnvtrgywnraeesaeafv......gdrfltgdigyvdrdgyfflvdrkkd.miisggfnvypqmieqaiyelpavqevivigipdqy 481
                    ga  p++v ++++  +g  +  g+g+tet  p  +         gs+gl l g+e+ ++  d   ++lppg+ ge+   gpnv rgy+n+ e + e +       +  f tgd+g++d++g++ +  r k+   +  g  v p  ie+ai     + +v+v g    y
  MMETSP1061-20121228|18676_1 400 VAGAACPIDVLQFMD-SIGIPVLEGYGLTETS-PIITLNSPSKRSIGSVGLPLEGVEVYII--DKDGNILPPGNEGEICCAGPNVMRGYYNNMEATDEVISvapdgkSRMFHTGDLGMMDTEGWIKVTGRIKEqYKLENGKYVVPAPIENAIGVSRFISQVVVCGANKPY 565
                  57999*****99876.6899999*******95.5555444455678**********98775..666789***********************99998865323322123599*****************977615689999**********************9987766 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   9.5e-14   3.5e-11      34     259 ..      26     242 ..      18     255 .. 0.81
   2 !   44.4   0.0     4e-15   1.5e-12     390     559 ..     418     586 ..     411     613 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 9.5e-14
    TIGR02188  34 kpfekvldeslepkvkWfedgelnvs..yncvdrhvekrkdkvaiiwegdeegedsrkltYaellrevcrlanvlkelGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaeesvekvlvvkrtgeevaewkegrDvwweelvekeasaecepekldsedplfiLYtsGstGkPkGvlh 259
                  k f++v+++s++++    +dg l+    y+ ++ ++ +   k  i    +e++++   l Y+++ ++v ++ ++lk+lGvkk d+v i      e +++  a   + a+   ++    a   +  i+d++  ++ ++ +++        ++   e l++++ s++++l +  ++ e   ++e  + ++++l++   +++   ++ d ed+  ++YtsG+tGkPkGv  
  MMETSP1061-20121228|18676_1  26 KSFSSVVSQSNKNNELHRKDGLLEFKtlYE-LQSRACEVYSKNPIYGTYNETTSKFDYLNYEDFGNKVHECCALLKDLGVKKFDKVGIISNNRYEWAMIAAATYSLNATLVPMYEAQLATDWRYIINDSSVSVIFCSTKEV-------FQRFSSEVLHTTP-SIHSTLCLDAVDGEEYGYQETANRTIDNLLSP--PQSSMLTPPDEEDLANLIYTSGTTGKPKGVEL 242
                  567888888888877777888776531133.444444433444444334445556899*************************************999999999999999999*9999999***********999987665.......3456677888887.8**********999999*************96..55566667799******************965 PP

  == domain 2    score: 44.4 bits;  conditional E-value: 4e-15
    TIGR02188 390 cpivdtwWqtetGgilitplpgvatelkpgsatlPlfGieaevvdeegkeveeeeeggvLvikkpwPsmlrtiygdeerfvetYfkklkg....lyftGDgarrdkdGyiwilGRvDdvinv.sGhrlgtaeiesalvsheavaeaavvgvpdeikgeaiv.afvvlkegveedee 559
                  +p+ + +  tet  i+  + p+   +   gs  lPl G+e+ ++d++g+ + +++e g ++   + P ++r+ y++ e   e+ ++ +++    +++tGD  ++d++G i ++GR+ +  ++  G  +  a ie+a+     ++   v g+++  +   iv  + +++++ e+d++
  MMETSP1061-20121228|18676_1 418 IPVLEGYGLTETSPIITLNSPS---KRSIGSVGLPLEGVEVYIIDKDGNILPPGNE-GEICC--AGPNVMRGYYNNMEATDEV-ISVAPDgksrMFHTGDLGMMDTEGWIKVTGRIKEQYKLeNGKYVVPAPIENAIGVSRFISQVVVCGANKPYNVALIVpDWATIRQELECDDK 586
                  578899999***9999999999...5889***********************9999.56666..5699*******99966555.4444444677*************************999469999**********************99999887766358888888888886 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   2.6e-08   9.7e-06      11     237 ..      39     282 ..      32     299 .. 0.75
   2 !   44.8   0.0     3e-15   1.1e-12     342     448 ..     435     546 ..     409     558 .. 0.82

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 2.6e-08
    TIGR02275  11 aeryrekGywldktltdileeqaakkpdaiaiic.ge..rk...fsyrelderadnlaasltklGikkgdtavvqlpniaefyivffallklGvaPvlalfshrkselkayaeqieaalliidrahslfd..edalarelkaklstlkvvivagk..eveeelksale...slaeevkleetkadevaffqlsGGstGtpkliPrthddyaysvrrsveice.....ltqqtrylcalPaahnyp 237
                  +e +r+ G    ktl ++ ++ ++ ++++    + +e   k   ++y+++ +++++  a l+ lG+kk d++ +   n  e+ ++  a   l ++ v    +   ++ ++  + +  +++  ++ ++ f+  +++++++  + +stl    v+g+   ++e  + +++   s+ +++ l++ + +++a +  + G+tG pk +  th + +  ++    + +     l+++++ l+ lP ah y 
  MMETSP1061-20121228|18676_1  39 NELHRKDGLLEFKTLYELQSRACEVYSKNPIYGTyNEttSKfdyLNYEDFGNKVHECCALLKDLGVKKFDKVGIISNNRYEWAMIAAATYSLNATLVPMYEAQLATDWRYIINDSSVSVIFCST-KEVFQrfSSEVLHTTPSIHSTLCLDAVDGEeyGYQETANRTIDnllSPPQSSMLTPPDEEDLANLIYTSGTTGKPKGVELTHRNIVSNIEGGRSMSQnpfdlLDESSKTLAFLPWAHSYG 282
                  567888899999999988888888776655432202211341114678888999999**************************99999999998888888889999999999998888777665.45554113456667777778888888888523334444445550005566678889999**************************999975444443333338999***********996 PP

  == domain 2    score: 44.8 bits;  conditional E-value: 3e-15
    TIGR02275 342 lddsdeiivttqGkPispddevrvvdeegepvaeGeaGrlltrGPytirGyykaeehnakafd..aeG...fyitGdlvkltkeGyivveGrakdqin.rGGekiaaeeienl 448
                  l+ + ++ + + G P+ +  ev+++d++g+++++G++G +   GP  +rGyy + e   ++     +G   ++ tGdl  +++eG+i v+Gr k+q     G+ +    ien 
  MMETSP1061-20121228|18676_1 435 LNSPSKRSIGSVGLPLEGV-EVYIIDKDGNILPPGNEGEICCAGPNVMRGYYNNMEATDEVISvaPDGksrMFHTGDLGMMDTEGWIKVTGRIKEQYKlENGKYVVPAPIENA 546
                  6677777778888888765.8*********************************9998887652234433389***********************87235666666677776 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.033        12      80     128 ..      79     125 ..      69     163 .. 0.71
   2 !   10.8   0.0   7.7e-05     0.029     235     251 ..     225     241 ..     219     250 .. 0.86
   3 !   19.7   0.0   1.6e-07   5.9e-05     374     569 ..     412     605 ..     373     620 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.033
    TIGR02316  80 eertltyrqlhrevnalasalralgvrrgdrvliylpmiaeaalallac 128
                  +   l y ++ ++v   +++l+ lgv++ d+v i   +  e a  ++a 
  MMETSP1061-20121228|18676_1  79 KFDYLNYEDFGNKVHECCALLKDLGVKKFDKVGIISNNRYEWA--MIAA 125
                  3344678999999*******************98776655543..3333 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 7.7e-05
    TIGR02316 235 syilytsgttgkpkgvq 251
                  + ++ytsgttgkpkgv+
  MMETSP1061-20121228|18676_1 225 ANLIYTSGTTGKPKGVE 241
                  6799***********96 PP

  == domain 3    score: 19.7 bits;  conditional E-value: 1.6e-07
    TIGR02316 374 isdalgkpvidnywqtetgwpvlaiarglddkpvklgspglpvygyrldvldeatgedvgpnekgllvvaap.lppgclstvwgddarflktyfsafkrllyssldwgirdedgytfilgrtddvinv.aghrlgtreieesvsshaavaevavvgvkdelkgqvav.afailkeadsveda..ddahalekelmalvesq 569
                    d++g pv++ y  tet  p++++     ++   +gs glp+ g ++ ++d+  g+   p++ g ++ a+p +  g  + + + d   + +     k  ++ + d g+ d +g++ + gr  +  ++  g+ +    ie+++     +++v v g + +    + v  +a++++  + +d+  d + a ek ++ l++++
  MMETSP1061-20121228|18676_1 412 FMDSIGIPVLEGYGLTETS-PIITLNS---PSKRSIGSVGLPLEGVEVYIIDK-DGNILPPGNEGEICCAGPnVMRGYYNNMEATDE--VISVAPDGKSRMFHTGDLGMMDTEGWIKVTGRIKEQYKLeNGKYVVPAPIENAIGVSRFISQVVVCGANKPYNVALIVpDWATIRQELECDDKvsDIEIANEKRVKVLIDNE 605
                  4699*************96.9999975...677789***************97.699999999999999887345566666655554..556677778999*********************9998873688889999*******************99988766553578888777777652133456666666666655 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0    0.0054         2     411     437 ..     216     244 ..     173     264 .. 0.82
   2 ?    5.2   0.0    0.0016      0.58     676     706 ..     502     532 ..     486     618 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.0054
    TIGR03443 411 vvGPdsn..ptlsftsGseGiPkGvkGrh 437
                  +  Pd +  + l +tsG++G PkGv   h
  MMETSP1061-20121228|18676_1 216 LTPPDEEdlANLIYTSGTTGKPKGVELTH 244
                  5556654226899************8777 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0016
    TIGR03443 676 rdrlyrtGdlGrylPdGnvecsGraddqvki 706
                  + r+++tGdlG    +G +  +Gr  +q k+
  MMETSP1061-20121228|18676_1 502 KSRMFHTGDLGMMDTEGWIKVTGRIKEQYKL 532
                  67**************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.13s 00:00:00.64 Elapsed: 00:00:00.51
# Mc/sec: 1754.68
//
Query:       MMETSP1061-20121228|18678_1  [L=1286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       295  (0.0719161); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.15s 00:00:00.73 Elapsed: 00:00:00.56
# Mc/sec: 3031.04
//
Query:       MMETSP1061-20121228|18679_1  [L=157]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (157 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                      1018  (0.248172); expected 82.0 (0.02)
Passed bias filter:                      240  (0.058508); expected 82.0 (0.02)
Passed Vit filter:                        50  (0.0121892); expected 4.1 (0.001)
Passed Fwd filter:                        24  (0.0058508); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.20s 00:00:00.62 Elapsed: 00:00:00.42
# Mc/sec: 493.39
//
Query:       MMETSP1061-20121228|18680_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1624.48
//
Query:       MMETSP1061-20121228|18683_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00079   16.3   0.1      0.001   15.9   0.1    1.1  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit


Domain annotation for each model (and alignments):
>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   2.4e-07     0.001      36     115 ..     167     252 ..     156     258 .] 0.67

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.4e-07
    TIGR01941  36 inddeeksltveaGdkllntlaskgifis.......sacGGggscgqcrvrvvegggeilptekshiskreakegwrlscqvkvked 115
                   n   e  +++  Gd+l +tl++++i +          cGGgg c+ c  + ve+ g    ++ +   +  +    rl+c  +++  
  MMETSP1061-20121228|18683_1 167 NNGVPETIVEARVGDNLRTTLQQNNIEVYqglkqklGNCGGGGQCTFCAAEFVESEGWAERSDYED-QRLAKSPTARLTCLNNIQGP 252
                  244468889999**************996222223358*************999877543333322.23333456789998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1261.23
//
Query:       MMETSP1061-20121228|18682_1  [L=1209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.47u 0.12s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 4199.34
//
Query:       MMETSP1061-20121228|18681_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-07   27.4   0.0    2.2e-07   26.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0018   15.6   0.0     0.0052   14.1   0.0    1.8  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.1e-10   2.2e-07      89     184 ..     209     292 ..     196     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.1e-10
    TIGR03903  89 LDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLt 184
                   ++l   h++Gv+ RDLkP+n+       + +  + D G +  l  v++         +ev Gs  Y aPe       t +sD+Y++G+++ e  t
  MMETSP1061-20121228|18681_1 209 ANGLEYLHENGVILRDLKPDNVGFD---ANDNPVIFDLGFARELHTVHK---------SEVAGSLRYMAPEMGLSQGATLASDVYSFGVLLYELCT 292
                  5678889**************9775...556789*****9876666665.........9******************************9999666 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.6e-06    0.0052      93     143 ..     202     253 ..     179     264 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.6e-06
    TIGR03724  93 lellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskeve 143
                  +++++ +++ +  lH++g++  Dl + N+ +  +d+ ++ D+G ++  ++v 
  MMETSP1061-20121228|18681_1 202 QNVATGIANGLEYLHENGVILRDLKPDNVGFdANDNPVIFDLGFARELHTVH 253
                  3788889999999******************559999*******99876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 2635.66
//
Query:       MMETSP1061-20121228|18686_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-10   37.5   0.1    0.00052   17.8   0.1    2.5  2  TIGR02909 spore_YkwD: uncharacterized protein, YkwD family


Domain annotation for each model (and alignments):
>> TIGR02909  spore_YkwD: uncharacterized protein, YkwD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   1.3e-07   0.00052      11      54 ..     549     592 ..     543     598 .. 0.90
   2 !   17.3   0.0   1.8e-07   0.00074      83     126 ..     603     648 ..     594     649 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 1.3e-07
    TIGR02909  11 LvnaerakngLkpLkvdeelskvarlksedmadknyfshtsPty 54 
                  L+n+er+k+gL+pL  +  + + ar  +e+ma+ n ++    ty
  MMETSP1061-20121228|18686_1 549 LINRERMKRGLRPLTRNIAMDELARKTAEEMAKSNGLNSLQTTY 592
                  89*******************************99877766666 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 1.8e-07
    TIGR02909  83 ekvvealm.nseg.hraniLspeyteiGvglvksgsygklwvqlfi 126
                  +++++++m   +g  ran+L+p++++ Gvg+ k+++++ ++ qlf 
  MMETSP1061-20121228|18686_1 603 RSIHRSVMlEKQGrERANVLNPYFQDFGVGTCKGEDGQLYMCQLFS 648
                  5566666623344269***************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 3338.84
//
Query:       MMETSP1061-20121228|18690_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.8   0.4      0.013   12.6   0.3    1.1  1  TIGR00159 TIGR00159: TIGR00159 family protein


Domain annotation for each model (and alignments):
>> TIGR00159  TIGR00159: TIGR00159 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.3   3.2e-06     0.013      34      91 ..      37      93 ..      14     105 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 3.2e-06
    TIGR00159 34 skavqllkGllvivvvqlislvllllllkfllekivlilavaivvllnkelrrilerl 91
                 s + + l+G++v +v+ +++l ++l  ++++ + +v+ l +   +++  e+r+ ++  
  MMETSP1061-20121228|18690_1 37 SAMNWRLNGMIVSTVAFVAILAFHLIKFEWI-DFLVTALILYPQIVFTMEMRSGVMSP 93
                 5667889***********************6.7999999999**********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 831.53
//
Query:       MMETSP1061-20121228|18687_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 2390.89
//
Query:       MMETSP1061-20121228|18689_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2301.20
//
Query:       MMETSP1061-20121228|18703_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1998.69
//
Query:       MMETSP1061-20121228|18705_1  [L=556]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.7   0.0      0.024   11.8   0.0    1.3  1  TIGR03854 F420_MSMEG_3544: probable F420-dependent oxidoreductase, MSMEG_3544 family


Domain annotation for each model (and alignments):
>> TIGR03854  F420_MSMEG_3544: probable F420-dependent oxidoreductase, MSMEG_3544 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.7e-06     0.024      43     122 ..     322     404 ..     314     418 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.7e-06
    TIGR03854  43 plvGmafalgrtsrlk.vGtsvavlpGrhpvlvakqlaslaalapkrvlpvlGlrsalpaerevfvvpa....Grrgavfdesle 122
                   l+ m+  l rt r   + ts+ vl Gr p lv+ +l s   +    +l +l l+  lp++r++ v        +rga+ d  le
  MMETSP1061-20121228|18705_1 322 YLLAMT-DLKRTLRTTaISTSLIVLQGRIPDLVSSELNSEVKMIQSTLLKIL-LTRELPGDRDALVEDCtkdkRNRGAIDDMDLE 404
                  555554.588999875279************************999999887.8889******9875432222567777777666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (556 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.30
# Mc/sec: 2446.20
//
Query:       MMETSP1061-20121228|18718_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2834.90
//
Query:       MMETSP1061-20121228|18734_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 402.91
//
Query:       MMETSP1061-20121228|18742_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.85    6.0   5.5       0.88    6.0   3.8    1.0  1  TIGR02031 BchD-ChlD: magnesium chelatase ATPase subunit D


Domain annotation for each model (and alignments):
>> TIGR02031  BchD-ChlD: magnesium chelatase ATPase subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   3.8   0.00021      0.88     285     314 ..       9      36 ..       2      48 .. 0.46

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.00021
    TIGR02031 285 pppPpPpepesegeeeedeeeeeeeekeee 314
                  +  Pp  +++++ ++++d+++++++++eee
  MMETSP1061-20121228|18742_1   9 QR-PP-HHNNNNDNNNDDDDDNNDDDNEEE 36 
                  33.33.333333333333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|18744_1  [L=938]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.092    8.2  45.2     0.0075   11.8  10.4    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        2.1    6.1   8.7       0.12   10.1   0.9    2.7  3  TIGR02978 phageshock_pspC: phage shock protein C


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8  10.4   3.7e-06    0.0075     711     942 ..     348     573 ..     336     589 .. 0.68
   2 ?    2.3  15.3    0.0028       5.8     726     937 ..     678     882 ..     669     911 .. 0.51

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 3.7e-06
    TIGR02168 711 eleeeleklrkeleelerklselkkelerle.keveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeei...eeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrele.kkvkelereleelreklaqlelrleeleveiae 942
                  +l+e +++lr +++  + k +++++ +++l+ +e+ +l+++ + l ++++el++ +++     +e +++  ++   +    ++++  +  ++ ++++++++++le+e+++lk+  +++     ++++ +a  + el el+++i+eleee++ +++ +e+ +    el+++++el+++ +s++ a ++++    + +e+l++l+ +++++++ + ++ + + a ++  ++ le ++++
  MMETSP1061-20121228|18744_1 348 NLDETITTLRYATNARNIKNTATRNVIKTLSpEEAAKLQRQNQLLVAQVKELQATIRKMGVVSSEDSTASTATTVSSgdeSDESDAGAPGETTMSQQKARIKDLEEEVQRLKIGGSTNG---VNITESMATDAIELSELKKRIAELEEEVS-IKKDLETEN---MELQSQVQELTADADSARLAANQMS----KIMEQLKNLKgDEIDKKRMAFDHIKVEEAWVSFVYQVLETNRQH 573
                  5677888888889999999999999999987345567777777788899999998887765555554444433333300033333344568899999**************99999644...56888889999999999999999999998.665555544...4789999999888876555555444....44444444431344555555555555555555555555555555 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.0028
    TIGR02168 726 lerklselkkelerl.ekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealsele.aeltelkeeaaekeerleslekeiaa..lekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleele 937
                  ++++++e+k++l++  +    ++ + + +l++el+ ++e +++++ ++e a +e+++ e+e  + +a++++ ++ +++ +++ls+++ +e+++lk++++++e ++   e ++++  +++ l+  ++  + ++++i   +   e++e+++ee+++++e+       ++++++++ ++l+  +e++ ++e++v++   +l+e +++l   +l+++e+e
  MMETSP1061-20121228|18744_1 678 QQQASEETKEDLSAPpQDDPTNIMKVIVNLKDELKAAHEVIRQQRVQVECAMQEKEKRENENGTATADVDEVSDPTSSDNTSLSAVSlDEYQKLKSRYTQLEIDRCWAEFQLRDriTNDALKFHRRIRAVMQKKIN--TPGDEDAEAREEEMKTRVEAE------IKKRMRTVTDNLKCFEERMVQMENHVTAEMSSLKEIQHSL---RLQQDEME 882
                  3455566666666541334566777778888888888888888888888888888888888888888888888888888888888774667788888887664443333333321112222222222222222222..222233333333333333322......2233444444444444444444444433333332222222...22222222 PP

>> TIGR02978  phageshock_pspC: phage shock protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.33   6.7e+02      72     103 ..     427     458 ..     411     460 .. 0.70
   2 ?   -2.4   0.1      0.43   8.9e+02      92     108 ..     479     495 ..     465     514 .. 0.60
   3 ?   10.1   0.9     6e-05      0.12      67     115 ..     820     868 ..     804     873 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.33
    TIGR02978  72 kkkfwqagetpkealrevkeelrrleerlrev 103
                  ++   +ag + ++++++ k+++++lee ++++
  MMETSP1061-20121228|18744_1 427 ESDESDAGAPGETTMSQQKARIKDLEEEVQRL 458
                  55666677777788888888888888887765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.43
    TIGR02978  92 elrrleerlrevEryvt 108
                  el++l +r++e+E+ v 
  MMETSP1061-20121228|18744_1 479 ELSELKKRIAELEEEVS 495
                  45555566666665543 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 6e-05
    TIGR02978  67 eeeevkkkfwqaget.pkealrevkeelrrleerlrevEryvtssefkle 115
                  +e++ ++++  ++e   k+ +r+v  +l+  eer+ ++E++vt +  +l+
  MMETSP1061-20121228|18744_1 820 AEAR-EEEMKTRVEAeIKKRMRTVTDNLKCFEERMVQMENHVTAEMSSLK 868
                  3333.556666666668999***********************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (938 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       347  (0.0845929); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.12s 00:00:00.58 Elapsed: 00:00:00.38
# Mc/sec: 3258.05
//
Query:       MMETSP1061-20121228|18752_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   13.7   0.1      0.011   13.1   0.1    1.2  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   2.7e-06     0.011     210     244 ..     102     137 ..      88     145 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.7e-06
    TIGR01289 210 detgivfaslypgcvadtglf.rehlplfrtlfppf 244
                    tgi +++ly g +a tgl+ r+ ++++  +fp  
  MMETSP1061-20121228|18752_1 102 GITGISLTTLYAGTLAATGLWiRKTMSVILSVFPSG 137
                  569****************965999*********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1351.57
//
Query:       MMETSP1061-20121228|18763_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 2307.17
//
Query:       MMETSP1061-20121228|18794_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1037.91
//
Query:       MMETSP1061-20121228|18803_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   13.7   2.0      0.013   13.7   1.4    1.9  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       0.8   3.3e+03       6      12 ..      29      35 ..      29      37 .. 0.80
   2 ?   13.7   1.4   3.2e-06     0.013       1      29 []      55      87 ..      55      87 .. 0.91

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.8
    TIGR01409  6 FLkaaaa 12
                 FL ++a+
  MMETSP1061-20121228|18803_1 29 FLAGSAV 35
                 8888886 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 3.2e-06
    TIGR01409  1 lsRRdFLkaa..aaagaaaglgl..llpsparA 29
                 +sRRd  ++a  ++ag+a++l++  l p pa+A
  MMETSP1061-20121228|18803_1 55 TSRRDLFQKAvtSVAGVAGALAVsgLAPEPAFA 87
                 79**********999999999989999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 1495.88
//
Query:       MMETSP1061-20121228|18816_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-18   62.5   0.0    6.6e-10   36.7   0.0    3.1  3  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.8   0.0   7.2e-06      0.03      10      67 ..      52     109 ..      44     115 .. 0.91
   2 !   10.6   0.0   1.6e-05     0.066      70     110 ..     129     167 ..     120     191 .. 0.84
   3 !   36.7   0.0   1.6e-13   6.6e-10     110     184 ..     192     267 ..     184     268 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.2e-06
    TIGR03634  10 kdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeakly 67 
                  ++ v lA dkr   g  + + + ++v   + ++ ++++G+ gd+ sl + l+ae+  +
  MMETSP1061-20121228|18816_1  52 ENCVALAVDKRFGSGPQLVNISPRRVWAPNSRLLVAFSGLEGDVVSLSEELRAEVVAK 109
                  67899**********999999********************************98665 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 1.6e-05
    TIGR03634  70 rrkkkisvkalatllsnllksskflpflvqllvgGvdeegp 110
                  ++++ is  ala l+s++l++++   ++v+ lv G+ e+ +
  MMETSP1061-20121228|18816_1 129 KHHRIISPPALACLVSHVLYQKRG--YYVEPLVVGLRETTE 167
                  567789999*************99..*********998654 PP

  == domain 3    score: 36.7 bits;  conditional E-value: 1.6e-13
    TIGR03634 110 pklyslDplGsiiedk.ytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdg 184
                  p l  +D++G+    + ++  G+ s+  +g+ e+ ++++++ +e  +   +  +sa+eRD  sG gi v+ itk+g
  MMETSP1061-20121228|18816_1 192 PFLCAMDMIGAQSFSQsFVCSGAASTSLYGIAEALWRPGMNPDELLECCGRVFQSALERDCLSGYGILVYLITKNG 267
                  66889*****9876666*********************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1310.46
//
Query:       MMETSP1061-20121228|18844_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 918.19
//
Query:       MMETSP1061-20121228|18853_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 1124.35
//
Query:       MMETSP1061-20121228|18870_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1595.35
//
Query:       MMETSP1061-20121228|18875_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1302.68
//
Query:       MMETSP1061-20121228|18894_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.53    6.5  18.7       0.94    5.7  13.0    1.4  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7  13.0   0.00023      0.94      22     111 ..      63     151 ..      56     185 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00023
    TIGR01642  22 eRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrry.dsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkr 111
                   ++R+Rsr++s +R R  +  +r  ++d+  R+++   + ++++  e+ s+  S     + s ss s   +r+ + k  +s++k ++ +++
  MMETSP1061-20121228|18894_1  63 KKERQRSRSKSPSRVRTLK--KRNPKDDKNARNKSILqHVQNPKFTEDASVSSSSYSSSSISSSSASTDDKREVGEKAKRSRSKVRSRRNS 151
                  4566777777776666655..7888999999999865144555556666655555554555555554444444444444444433333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1368.29
//
Query:       MMETSP1061-20121228|18898_1  [L=561]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-38  130.8  23.8    1.7e-38  130.4  16.5    1.1  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.4  16.5     4e-42   1.7e-38       1     395 [.     110     514 ..     110     515 .. 0.91

  Alignments for each domain:
  == domain 1    score: 130.4 bits;  conditional E-value: 4e-42
    TIGR00797   1 PailaniaqpllslvDtafvGhlgpveLaavglgslvlmvliiil..lglltattalvaqavGagnqqrlsrsasqslllalllgllvavvlifaakpllslmgadeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilifkfg......lGivGaAlAtvisqylmflllllyilk.akkvdlknegl..lkpdwealkrllklglplllrvilvsflvtllallvarlGstalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpkrakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpllfllglvtglglkgl 395
                  P++++n++    + +Dta +Ghlg+ +Laa +l+ l ++++ ++l  ++l+  + +l++ avGagn + ++++++ + ++   +g  v+v++  +++ +  ++g d+e+  +a +Y r+l+l+ip++  +++l++++ +++  ++  +++ +g+v+n +L   l++ +       +G++ + l t+ ++y+ +++++l+ ++ ++ ++  + gl  + + +e ++++  l +p++l   +  +  +++ +++a++G++++A++  a ++  ++  +  + a+A+ + v+ +lG  dp  ak++a v++ l +++ +vl+ +++  +  +  +ft+d+e l+l +   +  alt+++  la+ ++ +   +g++k ++++ +v  w+ ++p +++l ++++ +l+gl
  MMETSP1061-20121228|18898_1 110 PIFVSNVSWVGKKTTDTALLGHLGQEALAASALSDLWTSTTAVFLsgHILGIVSGSLIGGAVGAGNPKLAGIYIQVACVVVSAVGCGVVVLWN-LTETVWLWFGSDPEISAMAGTYSRLLSLAIPGIIAFNLLTQFFSAQKILRPEATASAMGLVANLVLGLTLVLGWPipgfggFGFAFCPLVTTAVTYVQVAFVVLVCVGmQRLHEPCWPGLvpHEITRERIRTFSGLYFPAALSGSSDFWRAAVIGSVAASMGEIDVAVFNTAYRIMWIALIFVNSNAAAAAINVSLRLGNMDPHGAKQAACVGIGLAVAVVGVLGWLVLWKSRWFGKIFTNDEEFLDLFVECSVPFALTLCFMNLAVAIERIPYSMGRSKEVFWMSLVGSWFGQVPAVLILTTYWRNDLVGL 514
                  8899999999999*********************6666665555511667777789*******************************987665.55566667778*************************************************************776677668888889999999999999998888888544444455544116788999*****************************************************************************************************************************************************************************9999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (561 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 2243.81
//
Query:       MMETSP1061-20121228|18910_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0071   14.6   0.5      0.015   13.5   0.3    1.6  1  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   3.7e-06     0.015       3      20 ..      83     100 ..      83     107 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.7e-06
    TIGR01409   3 RRdFLkaaaaagaaaglg 20 
                  RRdFL ++++++a++ + 
  MMETSP1061-20121228|18910_1  83 RRDFLATSGLTAASVLFH 100
                  9*************9983 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1629.78
//
Query:       MMETSP1061-20121228|18943_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.52
# Mc/sec: 743.71
//
Query:       MMETSP1061-20121228|18958_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-09   33.5   0.7    7.4e-08   29.9   0.1    2.9  3  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
    0.00017   18.9   0.1    0.00072   16.9   0.1    1.9  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family
     0.0046   14.7   0.0      0.012   13.3   0.0    1.7  1  TIGR00249 sixA: phosphohistidine phosphatase SixA
  ------ inclusion threshold ------
      0.013   12.5   0.0        1.6    5.7   0.1    2.8  3  TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.57   5.8e+02     131     153 ..      31      53 ..      24      62 .. 0.75
   2 ?    0.1   0.0       0.1     1e+02      23      51 ..      77     105 ..      73     117 .. 0.77
   3 !   29.9   0.1   7.3e-11   7.4e-08      31     174 ..     127     290 ..      86     292 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.57
    TIGR03162 131 lakeekenvlivtHgGviralla 153
                  + +++ ++++ v+H+ ++ +++a
  MMETSP1061-20121228|18958_1  31 MRRDAMKTTWSVGHATTTTTCMA 53 
                  44557899999999998877665 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.1
    TIGR03162  23 pLaekgeeqaaalrekledvkfdavvsSp 51 
                  pL e  ++q+ +lr+  + +++ +++sS 
  MMETSP1061-20121228|18958_1  77 PLPEVLKNQYYMLRHGQSTANIAEIISSS 105
                  66777778888888888888888888875 PP

  == domain 3    score: 29.9 bits;  conditional E-value: 7.3e-11
    TIGR03162  31 qaaalrekl...edvkfdav..vsSplsRcrelAella.................eklklpiekddrLrEmdfGdwEgksydeisekyp.eldawakdlaharvpgGEsvadfsqRveefleelake.ekenvlivtHgGvirallahllgl.pleqllsieveygsit 174
                   a++l + l    + + ++v  vsSp  R+r++Ae++                   + +++i +++rL+E  fG+ +  s  + s  +p ++     + +++++ + Esva++ +R  e++++  k  ++ +++ v+H+ v+++  +++ ++ ++ ++ s ++++g++ 
  MMETSP1061-20121228|18958_1 127 SANQLLDILekeGANPGQKVlfVSSPFARARQTAEACMdglvdnegnqerikrmgIEIENEIAIENRLMERYFGRLDDDSIYTYSYVWPmDA----IN-VTHTAFDVESVAAVCTRLLEVVKRCEKLyNDMHIVWVSHADVLQIGQLYAANAeNVGKFSSYRFKNGEVR 290
                  44444444432245556666569**************99********99998877677788899*************999888777755332....23.34556689********************9999**************999998857778888999999886 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.1     7e-07   0.00072       4     157 ..      88     264 ..      86     277 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 7e-07
    TIGR03848   4 lvrhgrstantaktLaG.....rtpGveLderGreqaaalaerladl.......piaai..vssPlercretveaiaear.................glevavderltevdYGdWtGrelkeLakeeLwkvvqahpsaavfPgGealaevqaravaavreldarleeehgpdavwvavshgDvik 157
                  ++rhg+stan a++++      +++   L+  G eq ++ a++l d+       p +++  vssP+ r+r+t+ea ++ +                 + e+a+++rl+e  +G  +  ++ +     +w++   +   ++f + e++a+v +r  + v++ ++       +d+ +v vsh+Dv++
  MMETSP1061-20121228|18958_1  88 MLRHGQSTANIAEIISSsrslaYSEKHGLTAFGYEQGKESANQLLDIlekeganPGQKVlfVSSPFARARQTAEACMDGLvdnegnqerikrmgieiENEIAIENRLMERYFGRLDDDSIYTY--SYVWPMDAINVTHTAF-DVESVAAVCTRLLEVVKRCEKL-----YNDMHIVWVSHADVLQ 264
                  79999999999888764111112334456655666666666655555222222233443338************9988777777888999999887777788999999999999999998765..5688887777777888.57**************999877.....466778889*****86 PP

>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.2e-05     0.012       3      70 ..      86     170 ..      84     198 .. 0.64

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.2e-05
    TIGR00249   3 lylmrHGeAkekaa..........sDkeRqLtkkGkdeaervaqwLkkag.....veldril..vSplvRAeqtaeivadaldes 70 
                   y++rHG+   + a            ++  Lt  G ++ +  a+ L +++     +  +++l   Sp+ RA qtae  +d l ++
  MMETSP1061-20121228|18958_1  86 YYMLRHGQSTANIAeiisssrslaYSEKHGLTAFGYEQGKESANQLLDILekegaNPGQKVLfvSSPFARARQTAEACMDGLVDN 170
                  588888875554433432222222223334676677776666665544444444744555543279*************988644 PP

>> TIGR00760  araD: L-ribulose-5-phosphate 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.085        88     198     223 ..      69      94 ..      40      98 .. 0.72
   2 ?    2.8   0.0     0.012        13     163     222 ..     146     205 ..     102     210 .. 0.75
   3 ?    5.7   0.1    0.0015       1.6     171     211 ..     212     252 ..     207     260 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.085
    TIGR00760 198 lqlakelkplqkelldkhylrkhgan 223
                    ++k   pl ++l++++y+ +hg++
  MMETSP1061-20121228|18958_1  69 EIVEKMPGPLPEVLKNQYYMLRHGQS 94 
                  3344555689999***********96 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.012
    TIGR00760 163 vlvhshgpfawgkdaadavhnavvleevakmalkslqla.kelkplqkelldkhylrkhga 222
                  vl    +pfa  +++a+a  + +v +e  +  +k + ++ ++  ++++ l+++++ r    
  MMETSP1061-20121228|18958_1 146 VL-FVSSPFARARQTAEACMDGLVDNEGNQERIKRMGIEiENEIAIENRLMERYFGRLDDD 205
                  33.3458*****************9999888777776652456689*******99886655 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0015
    TIGR00760 171 fawgkdaadavhnavvleevakmalkslqlakelkplqkel 211
                  ++w  da +  h a  +e va + ++ l++ k+ ++l +++
  MMETSP1061-20121228|18958_1 212 YVWPMDAINVTHTAFDVESVAAVCTRLLEVVKRCEKLYNDM 252
                  89*******************99998888888777766654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1483.74
//
Query:       MMETSP1061-20121228|18962_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-09   34.4   0.0    5.2e-09   33.6   0.0    1.3  1  TIGR03100 hydr1_PEP: exosortase A system-associated hydrolase 1
    0.00035   18.0   0.0    0.00056   17.3   0.0    1.3  1  TIGR03101 hydr2_PEP: exosortase A system-associated hydrolase 2
    0.00058   16.8   0.0    0.00087   16.2   0.0    1.2  1  TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
      0.001   16.5   0.0     0.0031   14.9   0.0    1.7  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases


Domain annotation for each model (and alignments):
>> TIGR03100  hydr1_PEP: exosortase A system-associated hydrolase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0     5e-12   5.2e-09      53     142 ..     207     295 ..     190     343 .. 0.82

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 5e-12
    TIGR03100  53 lAeaGlpvlRfDyrGmGDsegelstFedieaDiaAAidafleaapeleeivlwGlCDaAsAvllyatadervaglvllnPWvrqeatlak 142
                  l + G++v+ fD  G G s+ge  +    e +    + a l a+  ++ i+lwG   +A+ +l++++ d  +a ++l  P+     +la+
  MMETSP1061-20121228|18962_1 207 LLSMGVAVFSFDFAGSGKSDGEYVSLGYYEREDLSCVVAHLRATGVVSTIALWGRSMGAATSLMFGSRDPSIACMILDSPFAD-LTQLAE 295
                  5678*********************988765545555666678899**********************************943.333444 PP

>> TIGR03101  hydr2_PEP: exosortase A system-associated hydrolase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   5.4e-07   0.00056      40     114 ..     195     269 ..     158     292 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 5.4e-07
    TIGR03101  40 ksRrmvalqakalaaeGfgvlqiDlyGtGDSaGdfaeaswdvWkeDvaaalrwlkekga.qavtLwglrlgalLal 114
                   +R  v  q + l  +G  v  +D  G G S G+++   +   +eD++  ++ l++ g  +++ Lwg  +ga+  l
  MMETSP1061-20121228|18962_1 195 SARVEVLPQLSYLLSMGVAVFSFDFAGSGKSDGEYVSLGYY-EREDLSCVVAHLRATGVvSTIALWGRSMGAATSL 269
                  467777788888999*********************98875.49************9963689******9998665 PP

>> TIGR01836  PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.4e-07   0.00087      52     157 ..     173     275 ..     163     307 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.4e-07
    TIGR01836  52 rykpvkekllktPlLivyaLvnrpyilDlqedrslvknLLeeGldvyliDWgyPdkad.ryltldDyvngyikkavdkikrtseldkisllGiCqGGtfsliyaaLe 157
                  +++pv++   k+P+ +vy   n +  +++ ++     +LL+ G+ v+  D+   +k+d +y++l  y  + ++  v ++++t  +  i l G  +G + sl++ +  
  MMETSP1061-20121228|18962_1 173 HWEPVERIADKIPI-VVYMHGNSSARVEVLPQL---SYLLSMGVAVFSFDFAGSGKSDgEYVSLGYYEREDLSCVVAHLRATGVVSTIALWGRSMGAATSLMFGSRD 275
                  67777777888886.678888888888887765...589************9999888579******************************************9865 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.1e-06    0.0031      16     140 ..     174     297 ..     166     305 .. 0.82
   2 ?   -2.4   0.0      0.58     6e+02     232     269 ..     346     384 ..     328     400 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.1e-06
    TIGR01250  16 ftkvkeegekikl.lvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldkfyllgqSwGglLaqeYalkyqqhlkgliissmlasipeyvkel 140
                  ++ v+   +ki++ + +HG  +   e l +l+ ll  gv v+++D  GsgkSd        +++ +     ++++r    +  + l g+S G++  + +  +  + +  +i+ s+ a++ +  +e+
  MMETSP1061-20121228|18962_1 174 WEPVERIADKIPIvVYMHGNSSARVEVLPQLSYLLSMGVAVFSFDFAGSGKSDGEYV-SLGYYEREDLSCVVAHLRATGVVSTIALWGRSMGAATSLMFGSR-DPSIACMILDSPFADLTQLAEEM 297
                  55555556677761569************************************9855.56899999999999999999999999999999999988877654.56688888888888877776665 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.58
    TIGR01250 232 vPtLltvgefde.mtpeaaremqekiaksrlvvfedgsh 269
                  +P+ ++ ge+d  ++ ++a+ + +k a+ +  ++ +g h
  MMETSP1061-20121228|18962_1 346 IPAFFVAGEHDDfIKKHHAEAIYKKYAGDKNIIIVEGDH 384
                  788888888776245556777777777666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                      208  (0.050707); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.38u 0.17s 00:00:00.55 Elapsed: 00:00:00.40
# Mc/sec: 1778.55
//
Query:       MMETSP1061-20121228|18970_1  [L=404]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.1    4.4   8.4        3.1    3.8   5.8    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        5.3    3.4   7.1        3.9    3.9   3.9    1.5  2  TIGR00437 feoB: ferrous iron transport protein B


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   5.8    0.0015       3.1     130     260 ..     283     398 ..     263     403 .. 0.48

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0015
    TIGR00934 130 YWFeryfdgirdssrrnfklrrtktllereledrtetkvrtrtqvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedly 260
                  YW  + +    + ++r++k+ r+ ++ e++   ++ +k++ r        ++++++ q++ ++ e+++r+e  +  s++    v+s+ +a ++++       +e+++++r+p +++ + + + + d+ed++
  MMETSP1061-20121228|18970_1 283 YWTGKALS---KAAKRRRKQARSGETEEEKKARKAARKAAKR------AAAEEKEKNQQETWQKEMERRKEMAQKASEHLYGGVNSNRNAGQQHE------ESEEQNESRIPDNDYDDAKREFEADMEDME 398
                  55554443...3344444444443333333333332333222......23333444445555556666666666666666666665555555554......334444455666666666666666666654 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.18   3.7e+02     236     303 ..     129     145 ..      78     178 .. 0.51
   2 ?    3.9   3.9    0.0019       3.9     142     227 ..     288     376 ..     260     399 .. 0.54

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.18
    TIGR00437 236 kvlveksigtkvldrflglliilsvvfllllltflvgealsdlletvfealseavksaianealasll 303
                  + +v++++++k                                                   + ++ll
  MMETSP1061-20121228|18970_1 129 ESKVKNKYQSK---------------------------------------------------KRRKLL 145
                  22222222222...................................................222222 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0019
    TIGR00437 142 gieelkkaideekaiklvekkkraiei....lkeaeslaevkeklkelkqklkkglevleglleeraleiekiekelaevvkkeseskls 227
                   ++++ k  +++ +   +e++k+a +      k a   +++k++ ++ ++++++ +e++++ +e++ +   ++++++ + ++ ++e++ s
  MMETSP1061-20121228|18970_1 288 ALSKAAKRRRKQARSGETEEEKKARKAarkaAKRAAAEEKEKNQQETWQKEMERRKEMAQKASEHL-YGGVNSNRNAGQQHEESEEQNES 376
                  444444444444444445555555555000055555555555555555555566666666655555.55555556666666655555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (404 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       505  (0.123111); expected 82.0 (0.02)
Passed bias filter:                      229  (0.0558264); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.18s 00:00:00.51 Elapsed: 00:00:00.30
# Mc/sec: 1777.45
//
Query:       MMETSP1061-20121228|18978_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1372.69
//
Query:       MMETSP1061-20121228|19013_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 481.76
//
Query:       MMETSP1061-20121228|19027_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       306  (0.0745978); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.30
# Mc/sec: 2652.98
//
Query:       MMETSP1061-20121228|19039_1  [L=871]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-32  108.5  31.9    5.2e-22   76.3  12.1    3.3  4  TIGR00813 sss: transporter, solute:sodium symporter (SSS) family
    1.7e-07   28.4  10.2    1.7e-07   28.4   7.1    3.0  3  TIGR02119 panF: sodium/pantothenate symporter
    2.3e-05   21.1  29.0    4.8e-05   20.1   4.1    2.9  3  TIGR02121 Na_Pro_sym: sodium/proline symporter
      5e-05   20.0  30.6      0.011   12.3   6.2    3.4  3  TIGR02711 symport_actP: cation/acetate symporter ActP
     0.0014   15.0  24.2     0.0016   14.8   2.5    2.9  2  TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily


Domain annotation for each model (and alignments):
>> TIGR00813  sss: transporter, solute:sodium symporter (SSS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3  12.1   6.3e-25   5.2e-22       3     223 ..     158     404 ..     157     407 .. 0.84
   2 !   47.0   4.5   4.8e-16   3.9e-13     246     364 ..     472     585 ..     468     602 .. 0.89
   3 ?   -0.2   0.4      0.11        88     364     408 ..     618     662 ..     605     665 .. 0.85
   4 ?   -4.8   0.7       2.7   2.2e+03      24      50 ..     772     804 ..     768     813 .. 0.53

  Alignments for each domain:
  == domain 1    score: 76.3 bits;  conditional E-value: 6.3e-25
    TIGR00813   3 lagrslgglvvaaslvasnisasqllGlpgeayasGlai.iflelaalvllivlgllfvpvyikag.vltmpeylekRFgkrilrilsvlililviflkisvdlfsgalllelvlGldlylsllllalitilYtviGGlkAvvwtDtlqavimivgvlilpvvafsevgglesvvekakqaap.tvvs..........................vddllkleldpltsdlpwgalvfGliivallywcld 223
                  +agr +++ ++a  +v+ + +a++ll ++  a+++G+++ ++++ +a ++++++g+l++  +  a+ ++t+ e +++R+gk  +++  +++ + ++++++s+ l +ga+  e ++G+d+ l+ +l+ + +ilYt+ GGl+A++++ ++++vi+++ ++++  ++ ++v   +++++ + q +  t+ +                          v ++ + ++ +++s   + +++++++ + ++++++d
  MMETSP1061-20121228|19039_1 158 TAGRMIKTGLTASVIVSQWTWAATLLQSSNVAWQYGVSGpFWYASGATIQVLLFGVLAINLKKVAPsAHTVCEIVKARWGK-TAHLTFLFFCFSANIIVTSMLLLGGAATVEALTGVDYRLASFLIPWGVILYTASGGLQATFLASYIHTVIIFIVLILMVFIVYIKVYSSDQIFDYLAQTISyTE-EecqqiystgnsvettyydsstyacgeVPANRDGSYLTMISGGGLMFGIINIVGN-FGTVFVD 404
                  79**********************************7762667889*************99888877**************.9999999999999*************************************************************999999**************9999988433.3477777777777777777777755554445555555555544444444444444.6666666 PP

  == domain 2    score: 47.0 bits;  conditional E-value: 4.8e-16
    TIGR00813 246 sgvlkllpmllavlpGliaralytdvdpalagavqqasdqaypllvvellppglaglflavllaAvlStlssilnsastvfteDlYkkiirkaaekekkivsrgrvavlvaiviaivva 364
                  s  ++++p  la+ +Gl ++al+  +      a  + s  + p+ +  l+++   +l+l +l++A++St s+  +++s+++++D+Y+++++++a +e+ + ++++v+v+ ++ ++ +++
  MMETSP1061-20121228|19039_1 472 SICWFAIPFSLATSLGLTSTALMLPIT-----ASEAGSGLVPPAVATHLMGDTGSALILIMLFMAIVSTGSAESIAVSSLVSYDIYREYMNPEATGEQILFVSRVVIVVYGLFMGALAI 585
                  678********************6433.....3346899*************************************************************9999999999888877744 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.11
    TIGR00813 364 aaaqsgqvlqlvqsafgilgapllavfvLglfwkrvnakGAlvgl 408
                  ++  sg  l++v+  +gi+ ++++ ++   + w+++   GA+++ 
  MMETSP1061-20121228|19039_1 618 ISTTSGLNLGWVYLFMGIMIGSAVIPLWNLMTWDKASGTGAIISA 662
                  5667778899************99999999***********9985 PP

  == domain 4    score: -4.8 bits;  conditional E-value: 2.7
    TIGR00813  24 asqllGlpgeayasG......laiiflelaalv 50 
                  a+ +l++p+ ++++G      l  i++ ++a++
  MMETSP1061-20121228|19039_1 772 AWPILSVPAGVFTKGyfslwvLLAIAWGFGAAI 804
                  677788888888888644333222233333333 PP

>> TIGR02119  panF: sodium/pantothenate symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.4   7.1   2.1e-10   1.7e-07      39     208 ..     160     326 ..     145     363 .. 0.73
   2 !   10.2   0.7   7.3e-05      0.06     320     384 ..     521     585 ..     492     590 .. 0.84
   3 ?   -2.6   1.7      0.54   4.5e+02     392     432 ..     628     667 ..     616     702 .. 0.74

  Alignments for each domain:
  == domain 1    score: 28.4 bits;  conditional E-value: 2.1e-10
    TIGR02119  39 nrslgGfvlamtlvatyvsassfigGpGiayklGlGwvllamiqvptvylvlgvlGkkfailarklnavtlvdllkaryknkllvllsslsllvfllsa....ivaqfiGGarllesltGlsyltalllfslsvliyvliGGfravvltdalqgivmllgtiilliavikaggG 208
                  +r +   + a  +v+ ++ a++++    +a+++G+   +  +   ++  l +gvl  ++  +a    a t+ +++kar+ + +      l++l f +sa    +++  +GGa  +e+ltG+ y  a +l    v++y+  GG++a+ l+  ++++++++  i+++  v +    
  MMETSP1061-20121228|19039_1 160 GRMIKTGLTASVIVSQWTWAATLLQSSNVAWQYGVSGPFWYASGATIQVLLFGVLAINLKKVAP--SAHTVCEIVKARWGKTAH-----LTFLFFCFSAniivTSMLLLGGAATVEALTGVDYRLASFLIPWGVILYTASGGLQATFLASYIHTVIIFIVLILMVFIVYIKVYS 326
                  5666556678889999999999999999999999976666555566666677777766666664..688999******977543.....33444444432111456789*********************************************99998766554444333333 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 7.3e-05
    TIGR02119 320 aGiflaaplaaimstvdsllllssstlikdlylnylekeakekkvkkisllitlllgllvllaal 384
                  + ++l   + ai+st  +  + +ss +  d+y +y++ ea+ +++  +s ++ ++ gl++ ++a+
  MMETSP1061-20121228|19039_1 521 SALILIMLFMAIVSTGSAESIAVSSLVSYDIYREYMNPEATGEQILFVSRVVIVVYGLFMGALAI 585
                  45566666789***************************************999999988766665 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 0.54
    TIGR02119 392 wlnlfalGGleaaflwplvlGlywekanatGalasilvGva 432
                  w+ lf +G +    ++pl   + w+ka  tGa+ s   G+ 
  MMETSP1061-20121228|19039_1 628 WVYLF-MGIMIGSAVIPLWNLMTWDKASGTGAIISAWSGLI 667
                  66666.34333344445555578999999999998877764 PP

>> TIGR02121  Na_Pro_sym: sodium/proline symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   4.1   5.8e-08   4.8e-05     134     216 ..     253     335 ..     189     350 .. 0.84
   2 !   12.8   5.3   9.5e-06    0.0078     271     452 ..     473     660 ..     466     693 .. 0.63
   3 ?   -1.8   0.6      0.26   2.1e+02      54      81 ..     772     799 ..     770     825 .. 0.79

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 5.8e-08
    TIGR02121 134 tlytssGlvaGgklfesafGldyklalligalivviytflGGflavswtdlvqgllmlvalvlvPivallklgglseileave 216
                  ++ ts  l++G+  +e+  G+dy+la ++    v++yt  GG  a  ++  + ++++++ l+l+  +++ k+    +i++ ++
  MMETSP1061-20121228|19039_1 253 IIVTSMLLLGGAATVEALTGVDYRLASFLIPWGVILYTASGGLQATFLASYIHTVIIFIVLILMVFIVYIKVYSSDQIFDYLA 335
                  3567778899****************************************************999999999888777776655 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 9.5e-06
    TIGR02121 271 isWmilsllGavlvglvGiayvekvpgvevadkekifillskvlfnPliaGlllaailaaimstissqllvsssalaedlykallkkeasekelvlvgrlsvlvvaiiaivla.....lnpdssvlelvsyaWa.GfG..aafgpvvllslywkrltragalagmvigavtvivwkeaklaeilelyeiv 452
                  i W ++ +  a+ +gl+ +a +   + ++ a +  +   ++  l+    + l+l  ++ ai+st s+  +  ss +  d+y++ ++ ea+ ++++ v+r+ ++v  +   +la     + + ss l   +   a Gf   + f + +  +    +l +    +g++ig++++ +w+ ++  +  +   i+
  MMETSP1061-20121228|19039_1 473 ICWFAIPFSLATSLGLTSTALMLPIT-ASEAGSGLVPPAVATHLMGDTGSALILIMLFMAIVSTGSAESIAVSSLVSYDIYREYMNPEATGEQILFVSRVVIVVYGLFMGALAilldfMGKSSSALRTNAQHEAyGFXtrSMFYSSIS-TTSGLNLGWVYLFMGIMIGSAVIPLWNLMTWDKASGTGAII 660
                  55666666666666666666665553.333444555556666666677788999999*********************************************9988766666511112345555555444332224431122333222.22233455566666777777777777665555555544444 PP

  == domain 3    score: -1.8 bits;  conditional E-value: 0.26
    TIGR02121  54 gWlllGlPGalyvtGlselwiaiGlliG 81 
                  +W +l +P  +++ G  +lw+ + ++ G
  MMETSP1061-20121228|19039_1 772 AWPILSVPAGVFTKGYFSLWVLLAIAWG 799
                  6889999999999999999987766554 PP

>> TIGR02711  symport_actP: cation/acetate symporter ActP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   6.2   1.4e-05     0.011      58     238 ..     152     332 ..     125     361 .. 0.74
   2 !   10.8   2.9   3.8e-05     0.032     351     474 ..     520     636 ..     499     646 .. 0.77
   3 !    7.2   2.3   0.00047      0.39     451     494 ..     648     696 ..     636     722 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.4e-05
    TIGR02711  58 srsdyytaggritgfqnglaiagdymsaasflgisalvytsgydg.liyslgflvgwpiilf.liaerlrnlg..rytfadvasyrl.kqrpirilsaigslvvvalyliaqmvgagkliellfglnyhvavvlvgilmvlyvlfggmlattwvqiikavlllagatfmalmvmksvnfsfntlfk 238
                    sd  tag  i        i  ++  aa++l  s + +  g  g + y+ g  +   ++lf ++a  l+++    +t +++   r  k   +  l  + s  ++   ++  ++g    +e l g++y +a  l+   ++ly   gg+ at     i++v++++   +m ++v  +v  s +++f+
  MMETSP1061-20121228|19039_1 152 ILSDNSTAGRMIKTGLTASVIVSQWTWAATLLQSSNVAWQYGVSGpFWYASGATIQ--VLLFgVLAINLKKVApsAHTVCEIVKARWgKTAHLTFLFFCFSANIIVTSML--LLGGAATVEALTGVDYRLASFLIPWGVILYTASGGLQATFLASYIHTVIIFIVLILMVFIVYIKVY-SSDQIFD 332
                  456889999999665666678899*******************9945688888775..4555366778887752268899998888725566778888877655444333..56788899*******************************************999999999987763.4444443 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 3.8e-05
    TIGR02711 351 ggnlflgfisavafatilavvagltlagasavshdlyanvikkgkaterdelrvskitvlilgvvaislgilfenqniafmvglafs.iaascnfpiillsmywsklttrgaliggwlglitavv 474
                  g      +i  + f +i++  +  ++a +s vs+d+y + ++   at  + l vs++ +++ g+   +l il++    +     a+   a    +     sm++s ++t   l  gw+ l   ++
  MMETSP1061-20121228|19039_1 520 GS----ALILIMLFMAIVSTGSAESIAVSSLVSYDIYREYMNPE-ATGEQILFVSRVVIVVYGLFMGALAILLDFMGKS---SSALRtNAQHEAYGFXTRSMFYSSISTTSGLNLGWVYLFMGIM 636
                  33....3455667888999999999*************999876.99999**********************8754433...2233303445568888999*99999999999999998877654 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.00047
    TIGR02711 451 mywsklttrgaliggwlglitavvlmilgpti.....wvkilghekpiy 494
                  m w+k +  ga+i  w gli a++  i+g  +      v  lg ++ + 
  MMETSP1061-20121228|19039_1 648 MTWDKASGTGAIISAWSGLILALIGWIVGAQVqsgsvSVATLGTNEVML 696
                  89************************99986511111455566655555 PP

>> TIGR03648  Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   9.0    0.0028       2.3      25     192 ..     154     322 ..     137     390 .. 0.77
   2 !   14.8   2.5     2e-06    0.0016     372     427 ..     530     585 ..     516     709 .. 0.88

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0028
    TIGR03648  25 kefyvagrkvpavanGmAtaadWmsaAsfismagliallGydglaylmGWtgGyvllalllApylRkfg..kftvpdfvgdRyysktaRlvaviaailisftYvvgqirgvGvvfsrflevdielgvliglavvlvyavlgGmkgvtytqvaqyvvlivaylvpvvflsl 192
                  ++   agr +++ +    + ++W  aA  +  + +    G++g  +     +  vll  +lA  l+k +   +tv + v +R+  kta l  ++  + + ++     + g +  +  +++vd++l+ ++   +v++y+  gG+++   +  +  v++ +  ++ v+++ +
  MMETSP1061-20121228|19039_1 154 SDNSTAGRMIKTGLTASVIVSQWTWAATLLQSSNVAWQYGVSGPFWYASGATIQVLLFGVLAINLKKVApsAHTVCEIVKARWG-KTAHLTFLFFCFSANIIVTSMLLLGGAATVEALTGVDYRLASFLIPWGVILYTASGGLQATFLASYIHTVIIFIVLILMVFIVYI 322
                  566789999999999999****************9999****9887766677789999*********964489*********95.677776666666555555555566777788899**************************97666555544444443333333322 PP

  == domain 2    score: 14.8 bits;  conditional E-value: 2e-06
    TIGR03648 372 aAAlstaaGLllvissaisHDllkkllnpkasekkrllvarvallvviviaaylal 427
                   A +st +   +++ss +s+D++++ +np+a+ ++ l+v+rv+++v  ++ ++la+
  MMETSP1061-20121228|19039_1 530 MAIVSTGSAESIAVSSLVSYDIYREYMNPEATGEQILFVSRVVIVVYGLFMGALAI 585
                  57889999999***********************************9999888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (871 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.16s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 2673.55
//
Query:       MMETSP1061-20121228|19114_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-15   54.5   0.3      3e-15   54.3   0.2    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    8.8e-09   32.1   0.6    1.2e-08   31.6   0.4    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.2   1.5e-18     3e-15       3      80 ..      79     164 ..      77     203 .] 0.69

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 1.5e-18
    TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkg..........ekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggag 80 
                  Y +L v+++A++++i++AYrkl+k+yHPD+ ++          +++ e+ + +i+  y++Ls+++ r qYD+  h+ + + a+  ++ 
  MMETSP1061-20121228|19114_1  79 YRVLKVPRSAERKQIREAYRKLSKRYHPDIVRHkeilpgncnnHQDVEDEWERIQISYNILSEKKSRMQYDR--HEVIADPAAAMQRA 164
                  99***************************865545777777768899*************************..44444333221221 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.4   5.9e-12   1.2e-08       5      66 ..      79     151 ..      77     154 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 5.9e-12
    TIGR03835   5 yevLgidrDadeqeikkafrkLakkyhPD...........rnkaadaakifaeineandvLsnPkkraryDky 66 
                  y vL++ r a+ ++i+ a+rkL+k+yhPD            n+  d ++ +  i  ++++Ls  k r +yD++
  MMETSP1061-20121228|19114_1  79 YRVLKVPRSAERKQIREAYRKLSKRYHPDivrhkeilpgnCNNHQDVEDEWERIQISYNILSEKKSRMQYDRH 151
                  99**************************9654444444333778999999*********************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 956.92
//
Query:       MMETSP1061-20121228|19115_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.30
# Mc/sec: 378.37
//
Query:       MMETSP1061-20121228|19118_1  [L=867]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 3269.56
//
Query:       MMETSP1061-20121228|19132_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.007   14.6   0.8      0.015   13.5   0.6    1.6  1  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.6   3.8e-06     0.015       2      29 .]      65      93 ..      64      93 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.8e-06
    TIGR01409  2 sRRdFLkaaaaagaaaglgl.llpsparA 29
                 +RRd L+  ++++a+a++g+ + p  a A
  MMETSP1061-20121228|19132_1 65 TRRDILRQGCITAALATIGTvAGPKAALA 93
                 9******************9887777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.31
# Mc/sec: 1038.88
//
Query:       MMETSP1061-20121228|19138_1  [L=319]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (319 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1754.36
//
Query:       MMETSP1061-20121228|19171_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.09s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 707.94
//
Query:       MMETSP1061-20121228|19163_1  [L=906]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (906 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       309  (0.0753291); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.11s 00:00:00.50 Elapsed: 00:00:00.57
# Mc/sec: 2061.76
//
Query:       MMETSP1061-20121228|19174_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1270.40
//
Query:       MMETSP1061-20121228|19185_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 2025.75
//
Query:       MMETSP1061-20121228|19186_1  [L=697]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (697 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.24
# Mc/sec: 3833.18
//
Query:       MMETSP1061-20121228|19213_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   10.6   0.0      0.026   10.1   0.0    1.1  1  TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase


Domain annotation for each model (and alignments):
>> TIGR02176  pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   6.3e-06     0.026     834     932 ..     195     291 ..     189     310 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.3e-06
    TIGR02176 834 natGcssiygasapstpyakneqGkGPawsnslfedaaefgyGmrlavkkrrerlaelaekalesdiasdelkelleewlekkedaeeskelaaklkkl 932
                  +  G ssi++ sa     +    G GPa  + ++ +aae  y   l  + r+++l ++ ++  + +ia  +++e  e+  e  +++ + ++la +l ++
  MMETSP1061-20121228|19213_1 195 DMVGASSIFAKSAMHFEKKFGPMGMGPASEERIWRNAAELKYLQSLKRSDRKQFLLDKEKNKNNLPIA--QIREDDENSHEMGSETRKIHRLARELFDA 291
                  5689****************************************************999888887777..66666666666666666666666555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2451.23
//
Query:       MMETSP1061-20121228|19228_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1382.74
//
Query:       MMETSP1061-20121228|19245_1  [L=827]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (827 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 3307.73
//
Query:       MMETSP1061-20121228|19258_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-34  116.9   0.0    2.9e-34  116.0   0.0    1.5  1  TIGR00093 TIGR00093: pseudouridine synthase
    1.1e-05   22.7   0.0      2e-05   21.8   0.0    1.4  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family


Domain annotation for each model (and alignments):
>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.0   0.0   1.4e-37   2.9e-34       1     160 [.     102     297 ..     102     298 .. 0.89

  Alignments for each domain:
  == domain 1    score: 116.0 bits;  conditional E-value: 1.4e-37
    TIGR00093   1 nKPkgvlsskdDpekrkvvkdlleklrgkklaavGRLDrdseGlllltddgelqhrlthpekevektYlvqvegsv.tdedlealrkGvkledektkpaklklikepel..................................kt.klrvtlteGrnrqvrRltaavglevlrLvRvrigdvsl.egLeeGewreLt 160
                  +KPk vls ++D ++rk + dl+ekl  +++++vGRLD ds+Glll+++dg+l+++l+hp++ev+k+Y++ v g+v +d+  e+l++Gv+ + ++  +  + + + p++                                  +  ++r+++ eG+ r vrR++a+ g++v+ L+R+r+g ++l ++L +G+ r+Lt
  MMETSP1061-20121228|19258_1 102 HKPKWVLSVMNDSKGRKNLGDLDEKL-FSNMHPVGRLDYDSSGLLLFSSDGKLTQKLLHPSNEVQKEYVALVVGKViEDDLREKLSQGVETSMGTFPADLIGTKQIPQDdvkslikeiidnlppeydlekleknghlffktasELsEVRLVVEEGKHRMVRRILANSGYPVIGLKRYRLGCITLnDELLPGSTRDLT 297
                  7************************6.59****************************************999888725556689*****988776654443333333335699*****************************96669*************************************556********98 PP

>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   9.9e-09     2e-05     116     168 ..     127     177 ..     103     192 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 9.9e-09
    TIGR00005 116 lvsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefk 168
                  l s +++v RLD d SGll+++   k  ++L +   +++v+keYvalv g++ 
  MMETSP1061-20121228|19258_1 127 LFSNMHPVGRLDYDSSGLLLFSSDGKLTQKLLH--PSNEVQKEYVALVVGKVI 177
                  367899***************998887777765..589************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1594.02
//
Query:       MMETSP1061-20121228|19280_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 829.65
//
Query:       MMETSP1061-20121228|19275_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1687.57
//
Query:       MMETSP1061-20121228|19284_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   20.3   0.1     0.0012   16.8   0.1    2.2  1  TIGR01685 MDP-1: magnesium-dependent phosphatase-1
     0.0021   16.8   0.0     0.0059   15.3   0.0    1.8  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC


Domain annotation for each model (and alignments):
>> TIGR01685  MDP-1: magnesium-dependent phosphatase-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     6e-07    0.0012       1      91 [.      87     190 ..      87     286 .. 0.62

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6e-07
    TIGR01685   1 lpkvivfDlDgTlWdhynisllkgPfKpvksens......iiidkeG.aeltlikevrdvLqslkd....agvilaiasrndvp...evareiLkifkikyaGkv 91 
                  +p+++vfDlD   Wd++++++   P K v    +      +    +G +++ + + +   Lq+ +      g+++  as +d p   ++ r  Lk++++   G +
  MMETSP1061-20121228|19284_1  87 YPELVVFDLDACFWDQEMYEMPALPSKTVTGPLGdsgkegVTGAYSGrNKISMHPGSMVALQEHASgdkyPGMKVCFASSADTPfaeKIGRATLKLLEVL-PGLT 190
                  799*****************99999999874322223333333344424566666666666665555555566666666665543334555666666665.5555 PP

>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.9e-06    0.0059       2     120 ..      90     241 ..      89     247 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.9e-06
    TIGR01681   2 vivfDlDnTLwtdeed.........................vvkedpiedieltevtikeirdvLqelkknGvllalaSknddeevakellkikedYfd.........vilpkaelfldltigkrlp....KskrlveilkklnsvlklksilfvDD 120
                  ++vfDlD   w++e++                         + ++++i    ++   + ++++  +  k  G+ ++ aS+  d   a+++ ++ +++ +          +l++++  +  +ig ++p    K++ +   ++kl   + ++++lf+DD
  MMETSP1061-20121228|19284_1  90 LVVFDLDACFWDQEMYempalpsktvtgplgdsgkegvtgaYSGRNKISMHPGS---MVALQEHASGDKYPGMKVCFASSA-DTPFAEKIGRATLKLLEvlpgltvwdLVLKDWDGQDVNQIGRQPPlssnKAQTHFPFIRKLT-GISYDKMLFFDD 241
                  79***********************99987776666666665556653333333...44466666666666**********.899999999999986668999****97777999999999997764444499999999***99.67899******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1594.87
//
Query:       MMETSP1061-20121228|19328_1  [L=993]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.4e-269  894.5   0.0   1.7e-269  894.2   0.0    1.1  1  TIGR00963 secA: preprotein translocase, SecA subunit
   2.1e-190  632.6   0.2     3e-150  499.8   0.0    2.0  2  TIGR03714 secA2: accessory Sec system translocase SecA2
  ------ inclusion threshold ------
      0.026   12.3   0.2      0.057   11.2   0.1    1.5  1  TIGR01874 cas_cas5a: CRISPR-associated protein Cas5, subtype I-A/APERN


Domain annotation for each model (and alignments):
>> TIGR00963  secA: preprotein translocase, SecA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  894.2   0.0  1.2e-272  1.7e-269       1     783 [.      99     975 ..      99     979 .. 0.92

  Alignments for each domain:
  == domain 1    score: 894.2 bits;  conditional E-value: 1.2e-272
    TIGR00963   1 vnaleekveklsdeelrkkteelkerlekdeesldellpeafavvreaskRvlglrpfdvqllggivlhkgkiaEmktGEGktLvavlpaylnaLtgkgvhvvtvndYLakrdaeevgkvlrflglsvGvilssmskeerkeayacDitYgtnsElGFDyLrDnlalsleekvqre....fa.faiiDEvDsiLiDEArtPLiisgpaeketelYlkakkvaealkekdvdyevdekkravlltekGlkkaekllkvdnlydlen..kalvhyilnalkAkelfekdvdY.ivrdge.....vvivDeftGRilegRryseGlhqAieakEkveiqkesqtlAtityqnfFrlyeklagmtGtAkteeeEfkkiYklevvevPtnkpvlRkdesDlvykteeekfkAvveeiaea...hkkgrPvLvGttsveksEllskllkekrikhevLnak..nherEaeiiaqaGkkgavtiatnmAGRGtDikLggnadflark...........................................................................kkdevelklkealkevlkeekkelkkekeevvelGGLyviGterhesrRiDnqLRGRsgRqGDpgssrFflsleDellrlFgsdrlekllkklrleedepieskllskalesaqkrvEernfdiRkqlleYDdvlnkqReviYaeRkevleaedlkelilealekvleeivdalikkekkeeelklekleeklkklllleeeleee.elenaealeeeelkelllekvkaayeekeeeles......eapgllrelersvllqsiDekwkehlekmdllresvglRsygqkdPlieykkegfelFeel 783
                  +n lee++e l d+el++kte++++rl++ e+    ll+eafavvrea++Rvl+lr++dvqllgg++lh+g++aEm tGEGktLv++lp+ylnaLtg++ +vvtvndYLakrd+e +g+v+rflglsvG+i+s+m++e+r+ ay+ D++Y+tnsElGFDyLrD lal+ e++v  +    f+ f+++DE Ds+LiDEArtPLiis+++ +  ++Y +a ++aealk  d++y+vd k++a++lte G+++ e++l++d+l+d++   +a+v  + +a+ AkelfekdvdY +++d+      v i+D+ftGRil gRr+s+Glhq ie+kE++++ ++sq++A +tyq++Fr + +l+gmtGtA  ++ E++  Y l+vv vPt+ p++R+d +D+ +kt+++  +A+v+ei+++   +k grP LvGttsv +sEl+ + l e++ik e+Lna   n+ rE+ei+aqaG+ gavt+atn+AGRGtDi Lgg ++ +ar                                                                            ++ ++ +kl++  + +++  ++ ++++++ v+++GGLyv+Gt+rhes RiDnqLRGR+gRqGDpg+srFfls+eD+++ +Fg+d l+++lk++r++ed+p+e++ +  al++ q+ vE+++ +iR +++++DdvlnkqR++iYa R++vl+  d  e  +++++++ +++++a++k ++k  +++  k++ek  ++++l +++ +  ++e    ++ ++ +e+l   v + + +k ++l++      +ap+ + +  r+++l ++D++w +hl+ +++l+e+v +R ++ kdPl+ey  e+fe F+ l
  MMETSP1061-20121228|19328_1  99 INGLEETIEDLGDDELQAKTESFRQRLKNGEDINGPLLEEAFAVVREAAWRVLELRHYDVQLLGGLILHDGRLAEMATGEGKTLVSTLPVYLNALTGETSFVVTVNDYLAKRDMEIMGQVHRFLGLSVGLIQSEMTEEQRRVAYENDVVYVTNSELGFDYLRDHLALTPEQTVLPKgageFNgFCVVDEADSVLIDEARTPLIISKQVPSPATKYQTAYQLAEALK-PDIHYTVDLKNKACTLTEVGYRDSERALGIDSLFDIQAdgEAWVPFVDKAVNAKELFEKDVDYaMITDDSgkeigVGIIDSFTGRILDGRRWSDGLHQSIETKEGIAVSEQSQVIAKVTYQSLFRQFTRLSGMTGTAMSDADELELTYGLKVVPVPTALPIARRDYPDVAFKTRAAADEALVKEIKNVgggQKGGRPCLVGTTSVAQSELIVSKLAEAGIKAELLNASpkNAPRESEIVAQAGRTGAVTVATNIAGRGTDILLGGCPKTMARIklrsvliengvlsadetsalppsppeeyypcelnddvqymlkdaaaslrntfgseltalglneiltiaidtteaeDDPDHVVKLRNSAAVIREIFSEITDADRDLVQDAGGLYVMGTNRHESCRIDNQLRGRAGRQGDPGTSRFFLSFEDDMFVIFGGDGLQNILKTFRVSEDMPVEAPQVAEALDKVQQAVETKYQEIRGEIFKFDDVLNKQRQIIYARRRKVLNMPD--EESTAMMKEYNTNVINAIVKGQTKGGKIDAGKIIEKFGQFFPLVASIVQAgDIEG---MSDSKAAEYLSIAVDEVFTKKAAVLDEqaiaagKAPNSIGRSARYIMLVTMDNAWSDHLQLLENLKEAVVIRRFEGKDPLKEYIAEAFETFDGL 975
                  7999**********************9965555568***************************************************************************************************************************************997532222656******************************************6.***********************************9762368*********************54555533444589*************************************************************************************************************975547899********************************666******************************************99***********************************************************************997666778999**********************************************************************************************************************************************999..556677778888899999999999999**************97666654403333...33333444444444433333333333300000033446667788***********************************************876 PP

>> TIGR03714  secA2: accessory Sec system translocase SecA2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  499.8   0.0  2.2e-153    3e-150       2     491 ..      85     588 ..      84     595 .. 0.93
   2 !  130.8   0.1   8.3e-42   1.1e-38     494     761 ..     703     979 ..     698     980 .. 0.85

  Alignments for each domain:
  == domain 1    score: 499.8 bits;  conditional E-value: 2.2e-153
    TIGR03714   2 nklrlkklrkilkkinalkekmaslsdeeLkaktaefkkrLkegesLd.dilveayavvreadkrvLGlfPydvqvlGaivlheGniaemktGeGktLtatmplYLnalegkgallvttndYLakrDaeelgkvYrflGltvsvgvvddedeeldakekrkiYesDivYttnsaLgfDYLidnLadnkeekflrk....ln.yvivDevDsvlLDaaqtPlvisgaPrvqsnlykivdelvetlkededykfkkekkevwltekGiekaekylkieelyseea..aelvrhlnlalrakklfkkdkDYvvk......dgevvLlDretGrllegtklqsGlhqaieakekvelskesramasityqnlfklfeklsGmtgtgkvaekeflevYslsvvkiPtnkpikriDkadkvyatldekleatleevkel...hekgqPvLlitgsvelselysklLlkegiphnvLna..qnvakeaqiiaeaGqkgavtvatslaGrGtDikLg 491
                  n+  l +l+  +++in l+e+++ l d+eL+akt++f++rLk+ge ++  +l ea+avvrea +rvL l  ydvq+lG+++lh+G +aem+tGeGktL++t+p+YLnal+g+++++vt+ndYLakrD+e +g+v+rflGl+v++        e++++++r  Ye+D+vY tns+LgfDYL d La   e+  l+k    +n + +vDe+Dsvl+D+a+tPl+is +    +  y+++ +l e+lk+d +y+++ ++k   lte G +  e+ l i++l+  +a     v  +  a++ak lf+kd+DY +       +  v ++D+ tGr+l+g + + Glhq+ie+ke +++s++s+++a +tyq+lf++f++lsGmtgt+ + ++e+  +Y l+vv +Pt  pi r D++d  ++t     ea ++e+k++    + g+P L+ t sv  sel+ + L + gi  ++Lna  +n+ +e+ i+a+aG++gavtvat++aGrGtDi Lg
  MMETSP1061-20121228|19328_1  85 NEKYLAQLQERVNRINGLEETIEDLGDDELQAKTESFRQRLKNGEDINgPLLEEAFAVVREAAWRVLELRHYDVQLLGGLILHDGRLAEMATGEGKTLVSTLPVYLNALTGETSFVVTVNDYLAKRDMEIMGQVHRFLGLSVGLIQ-----SEMTEEQRRVAYENDVVYVTNSELGFDYLRDHLALTPEQTVLPKgageFNgFCVVDEADSVLIDEARTPLIISKQVPSPATKYQTAYQLAEALKPDIHYTVDLKNKACTLTEVGYRDSERALGIDSLFDIQAdgEAWVPFVDKAVNAKELFEKDVDYAMItddsgkEIGVGIIDSFTGRILDGRRWSDGLHQSIETKEGIAVSEQSQVIAKVTYQSLFRQFTRLSGMTGTAMSDADELELTYGLKVVPVPTALPIARRDYPDVAFKTRAAADEALVKEIKNVgggQKGGRPCLVGTTSVAQSELIVSKLAEAGIKAELLNAspKNAPRESEIVAQAGRTGAVTVATNIAGRGTDILLG 588
                  5667899**************************************88736999***************************************************************************************998754.....5699999*********************************99854444878**********************998889999*********************************************9766522678999*****************765344433334889***********************************************************************************************9999999998888874436889*******************************965699*****************************998 PP

  == domain 2    score: 130.8 bits;  conditional E-value: 8.3e-42
    TIGR03714 494 vkelGGLavigtermensrvdlqlrGrsGrqGDpGlsqffvsleDdlvkknspsklkkykkkkekkeskekekallkrrvrkivekaqraseekaesareqtiefeeslkiqrekvYeernklleaedk.leeevkkiiedvlekvveekkleekedlvrfilenlsyk..lkevpkeldlk..skeeikeylkeiaekeleekkkllkskkka........eefvrlsilkaiDeaWieqvDklqqlktvvtqrqagqrnaiveyekealesyekmkkei 761
                  v++ GGL v+gt+r e+ r+d+qlrGr+GrqGDpG+s+ff+s+eDd+ + ++ + l++  k  +++e+    + +   +v + + k+q+a e k ++ r +  +f+++l+ qr+++Y++r k+l+  d+ ++ ++k+  ++v++++v+ +    k d  + i +  ++   + ++++  d++  s+++ +eyl   +++ +++k ++l+++  a         +  r  +l ++D+aW ++   l++lk +v  r+   ++++ ey  ea+e+++ +++++
  MMETSP1061-20121228|19328_1 703 VQDAGGLYVMGTNRHESCRIDNQLRGRAGRQGDPGTSRFFLSFEDDMFVIFGGDGLQNILKTFRVSED----MPVEAPQVAEALDKVQQAVETKYQEIRGEIFKFDDVLNKQRQIIYARRRKVLNMPDEeSTAMMKEYNTNVINAIVKGQTKGGKIDAGKIIEKFGQFFplVASIVQAGDIEgmSDSKAAEYLSIAVDEVFTKKAAVLDEQAIAagkapnsiGRSARYIMLVTMDNAWSDHLQLLENLKEAVVIRRFEGKDPLKEYIAEAFETFDGLEDDM 979
                  89********************************************************9999887654....5777888999******************************************986651566788899999*****99988888887665554444544477888877776325678899*************99998875431111111145677889********************************************9998876 PP

>> TIGR01874  cas_cas5a: CRISPR-associated protein Cas5, subtype I-A/APERN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   4.2e-05     0.057      53     127 ..     780     856 ..     777     898 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.2e-05
    TIGR01874  53 salkkveklvkkaadvsapg.vkfevvlrrvrkvleenrklereelkeksdallreyiy.aaekvvlvvvaraeeek 127
                  +al+kv+++v+   ++  +  +kf++vl + r+++   r+++ + + e s a+++ey + + + +v+   + ++ ++
  MMETSP1061-20121228|19328_1 780 EALDKVQQAVETKYQEIRGEiFKFDDVLNKQRQIIYARRRKVLNMPDEESTAMMKEYNTnVINAIVKGQTKGGKIDA 856
                  5788888877665555555559**************9999****************976244555554444455555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.47
# Mc/sec: 2788.62
//
Query:       MMETSP1061-20121228|19340_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   12.3   0.1      0.041   11.8   0.1    1.3  1  TIGR01765 tspaseT_teng_N: transposase, putative, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR01765  tspaseT_teng_N: transposase, putative, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   9.9e-06     0.041      37      65 ..      93     121 ..      83     126 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.9e-06
    TIGR01765  37 gkskkelkkelqrllyknyredallqAqs 65 
                   ks + lkkel     k+++e++  qA +
  MMETSP1061-20121228|19340_1  93 SKSSSSLKKELRTIKAKDFLEKYEHQAEM 121
                  689999*********************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 728.81
//
Query:       MMETSP1061-20121228|19346_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 769.94
//
Query:       MMETSP1061-20121228|19353_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1061-20121228|19368_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1138.41
//
Query:       MMETSP1061-20121228|19369_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 1213.28
//
Query:       MMETSP1061-20121228|19375_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|19385_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 580.75
//
Query:       MMETSP1061-20121228|19400_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1554.54
//
Query:       MMETSP1061-20121228|19393_1  [L=946]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-18   61.1   0.0    1.6e-17   60.3   0.0    1.2  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    2.5e-12   43.8   0.0    5.9e-11   39.3   0.0    2.4  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    9.3e-10   35.7   0.0    2.4e-06   24.4   0.0    2.3  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.7e-08   31.0   0.0    1.3e-06   24.8   0.0    2.4  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    1.3e-05   22.3   0.0     0.0003   17.8   0.0    2.3  2  TIGR01587 cas3_core: CRISPR-associated helicase Cas3


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0     2e-20   1.6e-17      13     343 ..      37     364 ..      32     372 .. 0.78

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 2e-20
    TIGR04121  13 eprafQkevleaaeegesglliapTGaGKTlavflpsliela.....akekpk...kglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlap.elrvvglsATvgnl.eeaaevllgeek..eekaklvkakekkalevesllpee.eeklPwaGhlglkaleevleeikkarttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRs 343
                  +p++ Q+++l  + +g +++++a TG+GKT a  +p +  l+      +   +   kg++ + ++P + L+ ++ r l+++ ++++   ++++  G+  + ++    +++pd+++ Tp  la +ls+      ++++++ ++DE   Ll+    ++    L  ++r+ p + + + lsAT+ ++  e+++    ++    +  + v +  +++l+v+ +  ++ e+       +g+ + ++ +++ +++  tl+F+ tR   E++   + +  +e      +  g+ld ++R+   aa+++g+  ++v T     GvD    d vi+   p + + ++ R GR 
  MMETSP1061-20121228|19393_1  37 TPTPVQRKALPVVMSGADTIVMARTGSGKTAAFLIPLMETLLasedeMS---RsfsKGVRGVVLSPTRELSLQTLRVLKKM-SHFTEIKSIGIHGGERME-QQFDDLSSKPDVIIATPGRLAHILSEIPD-FNLRECQICILDEADRLLEMGFAQQ----LREINRTVPeRCQKLLLSATMPKMlIEFTKGGFTTDPqmVRLDAEVCV--SEELRVSFITCRSlEKDAGLLQIMGAIQDDKEANQGTRTGLTLIFCATRHHVEYVTALIRASGQE----ATMIYGTLDPDARNSNLAAFRNGRKPIMVVTDVAARGVDIPMCDHVIHYHFPPSPKLFVHRSGRV 364
                  57889*************************9888888877776643333...2456********************99876.566666789999998655.566788899**************998654.5689**************9754444....45666655526899******9764234444333333312233333333..344444444443314456666778888889999999999**************997666655555....66779********************************************9999999999999996 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0     0.021        17      10      48 ..      34      72 ..      31      79 .. 0.89
   2 !   39.3   0.0   7.2e-14   5.9e-11     227     328 ..     276     377 ..     239     387 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.021
    TIGR01389 10 GyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvP 48
                 G+ +  + q + +  v++g d++++  tG Gk   + +P
  MMETSP1061-20121228|19393_1 34 GFRTPTPVQRKALPVVMSGADTIVMARTGSGKTAAFLIP 72
                 77777899999**********************999999 PP

  == domain 2    score: 39.3 bits;  conditional E-value: 7.2e-14
    TIGR01389 227 GiiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeailly 328
                   +i++++R++ve +++ +++ g ea++ ++ l+ + R+ ++ +F + ++ ++v t     G+d +   +vih++ P +   +   +GR  R G+   ++ l 
  MMETSP1061-20121228|19393_1 276 TLIFCATRHHVEYVTALIRASGQEATMIYGTLDPDARNSNLAAFRNGRKPIMVVTDVAARGVDIPMCDHVIHYHFPPSPKLFVHRSGRVARAGRIGFCFALV 377
                  379*************************************************************************************99999877776665 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00016      0.13       9      47 ..      35      73 ..      31     113 .. 0.91
   2 !   24.4   0.0   2.9e-09   2.4e-06     224     335 ..     272     382 ..     221     392 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00016
    TIGR00614  9 lesfrpvqlevinavlegrdalvvmatGgGksLCyqlpa 47
                 ++   pvq +++ +v++g d++v+  tG Gk   + +p 
  MMETSP1061-20121228|19393_1 35 FRTPTPVQRKALPVVMSGADTIVMARTGSGKTAAFLIPL 73
                 5556799*************************9998885 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 2.9e-09
    TIGR00614 224 fkgksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyapaDv 335
                    g + +i+C +r++ve v+a ++  g +a+  +  l+ +ar++    f +    ++v t     G++ p   +vihy  p s   +   sGR  R g +  c ++ +p ++
  MMETSP1061-20121228|19393_1 272 RTGLT-LIFCATRHHVEYVTALIRASGQEATMIYGTLDPDARNSNLAAFRNGRKPIMVVTDVAARGVDIPMCDHVIHYHFPPSPKLFVHRSGRVARAGRIGFCFALVEPDEL 382
                  34445.8******************************************976666666666667889999999******************************999887765 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.5e-09   1.3e-06      24     142 ..      25     154 ..      18     198 .. 0.81
   2 !    3.5   0.0    0.0044       3.6     311     379 ..     304     373 ..     269     390 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.5e-09
    TIGR03817  24 dvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed.........pratalylaPtkalaadqlravkelee.rdvraa.tydGdtpaeerewirekaryvltnPdmlhl 142
                   v + + + G ++p   q +a  + ++G + +v + t sGk+ a+l+P++++l ++         ++ + + l+Pt+ l+   lr++k++++ +++++  ++ G+  +++ + +  k +++++ P  l +
  MMETSP1061-20121228|19393_1  25 PVYRGIVRMGFRTPTPVQRKALPVVMSGADTIVMARTGSGKTAAFLIPLMETLLASedemsrsfsKGVRGVVLSPTRELSLQTLRVLKKMSHfTEIKSIgIHGGERMEQQFDDLSSKPDVIIATPGRLAH 154
                  5677788999999***************************************999866776666559999********************9987777651556666666677778888888888877654 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0044
    TIGR03817 311 aGylaedrrele.ralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalv 379
                   G l  d r+ + +a+++G+   ++ t+    Gvdi   d v+   fP     +  ++Gr  r+g+  + 
  MMETSP1061-20121228|19393_1 304 YGTLDPDARNSNlAAFRNGRKPIMVVTDVAARGVDIPMCDHVIHYHFPPSPKLFVHRSGRVARAGRIGFC 373
                  5566555554432678999999999999999********************************9986655 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.028        23       2      22 ..      55      75 ..      54     147 .. 0.73
   2 !   17.8   0.0   3.7e-07    0.0003     128     321 ..     170     369 ..     153     375 .. 0.71

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.028
    TIGR01587  2 lvieAPtGyGKteaallwalk 22
                 +++ A tG+GKt a l+ +++
  MMETSP1061-20121228|19393_1 55 TIVMARTGSGKTAAFLIPLME 75
                 7999********987765554 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 3.7e-07
    TIGR01587 128 liiDEvhayeeytkalllallevlkdvdvkillmsAtlpkllkeylekielveenealdlkeekrfenq.risliek....dkleeisslerllealkkekk......vliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellkelkknekfvivaTQviEvslDisv.dvlitelapid..sLiQRlGRlaRygr 321
                   i+DE++ + e   a  l  +++    + + ll+sAt+pk+l e+ +      +++++ l+ e + +++ r+s i      ++ + ++++   ++  k++++       li++ t ++  ++   ++ +++  e  ++ +   +  r+      l+ +++  k ++v T v+  ++Di + d +i  + p++  + + R GR+aR gr
  MMETSP1061-20121228|19393_1 170 CILDEADRLLEMGFAQQLREINRTVPERCQKLLLSATMPKMLIEFTKGG-FTTDPQMVRLDAEVCVSEElRVSFITCrsleKDAGLLQIMG-AIQDDKEANQgtrtglTLIFCATRHHVEYVTALIRASGQ--EATMIYGTLDPDARNSN----LAAFRNGRKPIMVVTDVAARGVDIPMcDHVIHYHFPPSpkLFVHRSGRVARAGR 369
                  4899999999999999888899999889999************998764.55588888888855543321343333300103333334433.344333333222233256777777777777777776666..58889899888888766....************************74499999999875436789*******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (946 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.47u 0.14s 00:00:00.61 Elapsed: 00:00:00.45
# Mc/sec: 2774.70
//
Query:       MMETSP1061-20121228|19422_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.38
# Mc/sec: 1708.91
//
Query:       MMETSP1061-20121228|19430_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 2052.43
//
Query:       MMETSP1061-20121228|19437_1  [L=424]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (424 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1865.45
//
Query:       MMETSP1061-20121228|19460_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 777.27
//
Query:       MMETSP1061-20121228|19462_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-107  357.2   1.1     4e-107  356.9   0.7    1.0  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   4.6e-106  353.6   1.8   2.2e-105  351.3   1.3    1.8  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    2.1e-90  301.8   0.8    2.8e-90  301.4   0.6    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    3.8e-90  300.9   0.3    5.3e-90  300.5   0.2    1.2  1  TIGR00958 3a01208: antigen peptide transporter 2
    1.3e-87  292.5   0.3    1.8e-87  292.0   0.2    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.4e-77  258.2   1.2    4.6e-77  257.8   0.8    1.2  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    4.9e-76  254.3   0.1    6.6e-76  253.9   0.1    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.7e-74  249.4   1.0    1.7e-74  249.4   0.7    1.4  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    2.3e-71  239.1   0.1      3e-71  238.8   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.2e-64  216.0   0.1      3e-64  215.6   0.1    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    3.6e-59  198.5   0.0    4.8e-59  198.1   0.0    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.8e-59  198.2   0.0    6.3e-59  197.8   0.0    1.2  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    2.3e-37  126.5   0.0      5e-36  122.1   0.0    2.3  2  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.7e-35  120.2   0.0    2.9e-35  119.4   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    3.7e-35  118.6   0.1    1.8e-34  116.3   0.0    2.0  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.6e-34  117.3   0.0    3.3e-34  116.2   0.0    1.5  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    7.1e-34  115.2   0.0    1.4e-33  114.2   0.0    1.5  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    3.4e-32  109.8   0.0    8.6e-32  108.5   0.0    1.7  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    9.2e-32  108.2   0.0    1.7e-31  107.4   0.0    1.4  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.6e-30  103.2   0.0    2.5e-30  102.6   0.0    1.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    3.7e-30  103.1   0.0      6e-30  102.4   0.0    1.2  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    7.3e-30  101.9   0.0    1.5e-29  100.8   0.0    1.5  1  TIGR00955 3a01204: pigment precursor permease
    7.7e-30  101.9   0.0      8e-29   98.6   0.0    2.2  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    3.9e-29   99.8   0.0    6.4e-29   99.1   0.0    1.2  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.2e-28   98.2   0.0      2e-28   97.5   0.0    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.6e-28   97.5   0.0    3.3e-28   96.5   0.0    1.4  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    6.1e-28   95.7   0.1    5.1e-27   92.7   0.0    2.1  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    2.6e-27   93.8   0.0    4.4e-27   93.0   0.0    1.2  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    4.7e-27   92.7   0.0    1.9e-26   90.7   0.0    1.8  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    4.7e-27   92.9   0.0    8.1e-27   92.1   0.0    1.3  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.3e-26   90.5   0.0    3.8e-26   89.8   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.7e-26   90.4   0.0    6.8e-26   89.0   0.0    1.6  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    6.2e-26   89.2   0.0    1.6e-25   87.9   0.0    1.6  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    7.8e-25   85.8   0.0    1.4e-24   85.0   0.0    1.3  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.1e-24   85.0   0.0    2.5e-24   83.7   0.0    1.6  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.6e-24   84.5   0.0    2.3e-13   48.0   0.0    2.6  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.1e-24   84.1   0.0    3.2e-24   83.5   0.0    1.2  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.1e-24   83.5   0.0    4.9e-24   82.8   0.0    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
      1e-23   81.6   0.0    2.2e-23   80.6   0.0    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    7.8e-21   72.2   0.0    1.7e-19   67.8   0.0    2.4  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    6.9e-20   69.4   0.0    1.3e-19   68.5   0.0    1.4  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.9e-18   62.6   0.1    2.2e-18   62.4   0.0    1.0  1  TIGR01257 rim_protein: rim ABC transporter
    2.9e-18   63.5   0.0    9.2e-14   48.7   0.0    2.2  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    3.4e-17   60.6   0.0    8.9e-17   59.2   0.0    1.6  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.7e-17   60.6   0.0    1.2e-16   59.0   0.0    1.7  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    4.8e-17   59.5   0.3    6.5e-17   59.1   0.2    1.1  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    5.2e-17   59.3   0.0    8.3e-17   58.6   0.0    1.2  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.9e-16   57.6   0.0    9.8e-09   32.1   0.0    2.2  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    4.7e-16   56.5   0.0    1.4e-15   55.0   0.0    1.7  1  TIGR01288 nodI: nodulation ABC transporter NodI
      1e-15   55.9   0.2    5.6e-14   50.2   0.0    2.8  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.2e-15   55.4   0.1    3.4e-07   27.8   0.1    2.2  2  TIGR01978 sufC: FeS assembly ATPase SufC
    2.1e-15   54.4   0.0    6.1e-15   52.9   0.0    1.6  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    3.5e-15   54.1   0.1    1.7e-14   51.9   0.0    2.0  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.4e-13   47.2   0.0    4.6e-13   45.5   0.0    1.6  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.2e-12   45.0   0.0    1.2e-11   41.6   0.0    2.0  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.6e-10   38.7   0.0    1.2e-06   26.1   0.0    2.3  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    5.2e-09   32.7   0.1    2.8e-06   23.6   0.1    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
     0.0049   12.5   0.3      0.013   11.1   0.0    1.6  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  356.9   0.7  5.7e-109    4e-107      11     570 ..     137     725 ..     133     727 .. 0.90

  Alignments for each domain:
  == domain 1    score: 356.9 bits;  conditional E-value: 5.7e-109
    TIGR02203  11 pykallvlalvalvlvaatesllaallkplldegfse.................lekeevllavPllvvgl..vvlrGias.f..vsdyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlall..vrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDspp..ekdeGtr..alervrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepds..GeillDgvdladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLlarnGlYasLhkiqf 570
                  + k+++vlal  ++   a    ++ ++k l+d    +                 l++++++  +P++v +l   + r  as f  + + ++a v+++ +r++ +++f+++ tl  +++  +++g++ sr++   ++++s + ++++  v  t   +gl+  l+y+++ l+ + vvl+ + a+   +  +++   k  +++ ++ +++   v ++l +y  v+ f+  ++e  R+++  +  ++ a++ +++ sl +     i sv+++ +++++  q  +g+ tvG+lv +   + +l  pl     v  ++ + l+  e+ f+l+D+++   +d  +    +e ++ ++ f+ v+f ypg+ dr++l+++s+++ +G++va+vG sG Gkst+++ll RFy+p++  G++ + g+dl+dl+L+s R+ va++ qd vLF ++i  n++Yg+l   + ++v +a+++a ++d + + p+G dt vGe+g kLsGG +qR+aiaRa+lkdaPiL+ De ts+LD+  e  +   ++++ ++Rtt+++ahRLsti++ D+i+vl +G++verGtheeL +  G Y++L ++q 
  MMETSP1061-20121228|19462_1 137 KRKQRVVLALSLMLAGKAVTIQVPYIFKILVDTLQMDgtgaieaaasltpgtldLTTATTAAGIPIIVALLgyGMSRAAASgFqeLRNAVFANVTQEAIRNVGRSVFHHVHTLDMQFHLTKNTGRV-SRILDRGNRSISFVLNAMVFHVAPTTFEVGLVTGLVYYQFGLSHAGVVLATIGAYTgfTMGITQWRTKFRRDMNRLENQASGRVVDSLVNYETVQFFNNINYEVGRYEESLKGYQKAAIQAQQSLSLLNFGQAAILSVGMTGIMMLTAQQILDGTATVGDLVLVNGLLFQLSVPLNFFGSVYREVSQSLLDMEHTFELIDTTTpiYNDPTRLryDPETMTTDIAFNRVDFAYPGKmDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNL-GSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQDCDEIIVLHNGQVVERGTHEELSKFAGRYTELLTVQT 725
                  5677888888877776666677788888888887777788899999999999998888888889987766522455655541322457899*********************************96.9******************************************99888888866531133344444568899999******9999*******************************************************************************************************************8752134444331156779**************8659**************************************986444*********************************************.788999******************************************************************************************************************************99885 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  351.3   1.3  3.1e-107  2.2e-105      17     575 ..     139     724 ..     132     725 .. 0.81

  Alignments for each domain:
  == domain 1    score: 351.3 bits;  conditional E-value: 3.1e-107
    TIGR02204  17 rarvlaalvaLviaaavtLslplavrklideGfskeesellneafalll.vvvlvlalatalrfylvsslGervv...a....dlrkavfahlle.....lspaffdknrsgevlsrltadttllksvv..G.aslsialrnllll.......iGalamlvitsvklt..slvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdi.kaPaqpkalpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqs..GailldGvdlreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakggLyarlarLq 575
                  ++rv+ al  ++++ avt+++p+ ++ l+d+ ++ + +++++ a +l   ++ l+ a+++a    +v  lG  ++   a    +lr+avfa++ +     +  + f+++++ +++  lt +t  +  ++  G  s+s  l  ++         +G ++ lv+ ++ l+  ++vl+++       + ++++  k  r+      +as+ + ++l + +tvq +++ ++e  r+++++    +aa ++ +  +ll      +   ++++++ + a+++l g+ + G+L     +    +  l  ++ v+ e++++   +e  +el+++++ i + P++ +  p+ ++++i+f++v fayP + d++ l++l++++ +G+tva+vG sG Gkst+l+ll rfydP++  G+++++G dl++l+ + +r+++a++pqd++lf +s+  ni+yG++ +s e+v +aak+a+ ++ i ++p+Gydt +Gerg++LsGG kqr+aiarailkdapiLL de ts+Ld+++e  + + ++++ ++rtt+++ahrL+t++++d i+vl +G++ve+Gth+eL + +g y +l ++q
  MMETSP1061-20121228|19462_1 139 KQRVVLALSLMLAGKAVTIQVPYIFKILVDT-LQMDGTGAIEAAASLTPgTLDLTTATTAAGIPIIVALLGYGMSraaAsgfqELRNAVFANVTQeairnVGRSVFHHVHTLDMQFHLTKNTGRVSRILdrGnRSISFVLNAMVFHvapttfeVGLVTGLVYYQFGLShaGVVLATIGAYTGFTMGITQWRTKFRRDMNRLENQASGRVVDSLVNYETVQFFNNINYEVGRYEESLKGYQKAAIQAQQSLSLLNFGQAAILSVGMTGIMMLTAQQILDGTATVGDLVLVNGLLFQLSVPLNFFGSVYREVSQSLLDMEHTFELIDTTTPIyNDPTRLRYDPETMTTDIAFNRVDFAYPGKMDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQDCDEIIVLHNGQVVERGTHEELSKFAGRYTELLTVQ 724
                  5666777777777788888888888888887.7777777777666554313333333333333344445553322111222225666666655432211245566666666666666666666666666332235666666555431111112788888999888886226777777777776666667666666666555678899*****************************99999999999999999999999999999********************975544444445567889**********************999984579999999**************************************************************86669********************************************************************************************************************************************************************************9988 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  301.4   0.6   3.9e-92   2.8e-90     194     693 ..     218     725 ..     202     726 .. 0.91

  Alignments for each domain:
  == domain 1    score: 301.4 bits;  conditional E-value: 3.9e-92
    TIGR01846 194 alsllrtylfahltsridvelgaklyrhllalPlsyfesrrvGdtvarv.releqirefltgsaltvvldllfvvvflavmffyspkl..tlvvlvslviylllsvivspilrkrvedkfek.saeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdildsPteass..agkaalpe.lkGaiefenirfryked.spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPek..GrvlvdgvdlaladPawlrrqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellakeglyaklyqqqs 693
                   +  lr+ +fa++t+    ++g  +++h+ +l + +  ++++G  v+r+    ++  +f+ ++ +  v    f v +++ + +y   l   +vvl ++ +y  + + ++   r++   + ++ + +a+  +v+s+   et++     +    r+e+ l  y +a+ +++++  l + + + i  + +  ++++ a+ +l+G  +vG+lv +n l  ++s P+  +  ++++  q  + +e   +++d+ t  ++  + +   pe ++ +i f+++ f y      ++l+nls++i++G+++  vG+sG+Gkst+ +ll r+y P +  G+v + g+dl  ++  ++r+ v+v+ q+ vlf+ si  ni+ ++ + s e v++aak a  hd i++ ++Gy+t vge+G +lsGG +qr+a+ara++++  il+ de ts+ld ++e+ im +++++ ++rt ii+ahrlst++++d+i+vl++G++ve+G+heel +  g+y++l + q+
  MMETSP1061-20121228|19462_1 218 GFQELRNAVFANVTQEAIRNVGRSVFHHVHTLDMQFHLTKNTGR-VSRIlDRGNRSISFVLNAMVFHVAPTTFEVGLVTGLVYYQFGLshAGVVLATIGAYTGFTMGITQ-WRTKFRRDMNRlENQASGRVVDSLVNYETVQFFNNINYEVGRYEESLKGYQKAAIQAQQSLSLLNFGQAAILSVGMTGIMMLTAQQILDGTATVGDLVLVNGLLFQLSVPLNFFGSVYREVSQSLLDMEHTFELIDTTTPIYNdpTRLRYDPEtMTTDIAFNRVDFAYPGKmDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQDCDEIIVLHNGQVVERGTHEELSKFAGRYTELLTVQT 725
                  5678***************************************7.5666144556679*****999*************9999988773358***************986.67887777766367778899***********99888888899****************999999888888999999999999*****************************************************98665544314455556527899**********7551467*************************************96544*********************************************************************************************************************************************************************************99986 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.5   0.2   7.4e-92   5.3e-90     211     710 ..     213     720 ..      74     721 .. 0.81

  Alignments for each domain:
  == domain 1    score: 300.5 bits;  conditional E-value: 7.4e-92
    TIGR00958 211 slaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvl.lrnlvkllgllifmlslSprLt..lvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLv..sFlLYqlqlgeavreLsevysellkavGasekvFeyldRk.Pqlelsg..tlapknleGkveFqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtg..GqvllDgkplkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmekedvykql 710
                   +a s ++ lr+ +f +++++  +++ + +f+ +   d++F+ +++tG +   l      +s  l   + v+ +   +  +gl++ ++   + L+   v l ++      +  + ++  k  +++     +a+  + + l   +TV+ F + ++E+ r++e l+  ++ + +++    l+   +  + ++ +++++++ +q++l+g+ + g+Lv    lL+ql++   ++ +++vy e+ ++    e+ Fe++d + P  + +    + p++++  + F+ V F+YP + d+p+l++L+f +  G++va VG sG GKSt+  ll ++Y+P +  G+v + g++lk+++  ++++ va++ q+ vlf  s+  Ni YG      e+v  aak+a++hd i+ +++gydt vge+G  lsgG kqr+AiARA++++  +L+ De tS LD+++e  + +  ++  ++rt +++ahrLst++ +d+i+vl++g+vve Gth++L +  + y++l
  MMETSP1061-20121228|19462_1 213 RAAASGFQELRNAVFANVTQEAIRNVGRSVFHHVHTLDMQFHLTKNTGRVSRILDRGNRSISFVLN--AMVFhVAPTTFEVGLVTGLVYYQFGLShaGVVLATIGAYTGFTMGITQWRTKFRRDMNRLENQASGRVVDSLVNYETVQFFNNINYEVGRYEESLKGYQKAAIQAQQSLSLLNFGQAAILSVGMTGIMMLTAQQILDGTATVGDLVlvNGLLFQLSVP--LNFFGSVYREVSQSLLDMEHTFELIDTTtPIYNDPTrlRYDPETMTTDIAFNRVDFAYPGKMDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMThiKQVGRDRTTIIVAHRLSTIQDCDEIIVLHNGQVVERGTHEELSKFAGRYTEL 720
                  3344445556666699999999999***********************975444444444443333..33321333444455554444444444311466777777777777888899999999998888888888899999**********************98876655544444444444444444557999999************986226689888775..67789*********************86265555541157799************************************************************6545*******************************************************************************************************************9999888754566689*************************************999999887 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  292.0   0.2   2.5e-89   1.8e-87     197     709 ..     206     721 ..     193     722 .. 0.84

  Alignments for each domain:
  == domain 1    score: 292.0 bits;  conditional E-value: 2.5e-89
    TIGR03796 197 llgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvla..lqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsgl...esdff.srwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgys.aleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepws..GeilfDgkpreeiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrr..RgctciivaHRLstiRdcdeiivlerGkvverGtHeellakegaYarLi 709
                  llg  ++    + ++ l++a+ ++++++   ++  ++++h+  l ++f+  + +g +++ ++  ++  +++ + ++  v  ++  v  +  ++ y+  l+  +++la+i + +     +++ r++  r +++ + +++g ++ +l + et++       e   + + ++Gyq  +++a+q+l + +       +++ s+  + i+++++ ++l+g+ t+G lv  + ll +++ p++ + ++  e+ +   d+e+  +++++++   ++    +  + ++ e ++  + ++ v f+y  ++++p+++++s+++ +G+ vA+vG+sG+Gksti +l+  +y+p++  G++ + g+++++++ + +++s+a++ qd vlf+ ++  n+   +   + ed+v+Aak A ihd+i++ p+gy++ + e g  lsGG++qR+ iARa+ k+  iL+ DE ts+LD++tE  i+ ++++  R  t+iivaHRLsti dcdeiivl +G+vverGtHeel + +g Y++L+
  MMETSP1061-20121228|19462_1 206 LLGYGMSRAAASGFQELRNAVFANVTQEAIRNVGRSVFHHVHTLDMQFHLTKNTGRVSRILDRGNRSISFVLNAMVFHVAPTTFEVGLVTGLVYYQFGLSHAGVVLATIGAYTgfTMGITQWRTKFRRDMNRLENQASGRVVDSLVNYETVQFFNNinyEVGRYeESLKGYQKAAIQAQQSLSLLN----FGQAAILSVGMTGIMMLTAQQILDGTATVGDLVLVNGLLFQLSVPLNFFGSVYREVSQSLLDMEHTFELIDTTTPIYNDP---TRLRYDP-ETMTTDIAFNRVDFAYPgKMDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQvgRDRTTIIVAHRLSTIQDCDEIIVLHNGQVVERGTHEELSKFAGRYTELL 721
                  5666777778889999******************************************9998766555555555555555555555555556667777777777766666554113445666677777777777777778888888888877554400044433145689*********9998655....456677889999**********************************9887777766666666666666655555444444...3444555.7899************6389*****************************************9767******************************************************************************************************************************966778********************************************98 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.8   0.8   6.5e-79   4.6e-77      90     570 ..     237     724 ..     176     734 .] 0.83

  Alignments for each domain:
  == domain 1    score: 257.8 bits;  conditional E-value: 6.5e-79
    TIGR01192  90 tllteafgriismplswhsqrgtsnalhtllrasetlfglwlefmrqhlatfvallllipvalamdlrlslvlvvlgiv..yvliaklvms.rtkegqaaveeyyhsvfkhvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldwwalasgln...riastislviilvigtvlvkkgelsvgeviafigfanlligrldqlkafvtqivearakledffdledsvke.reepadarelk.nvkgavefrdisfefanssqg..vrdvsfeakagqtvaivgptgagkttlinllqrvydp..ksgqilidgvdiatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliqkdgrfakllras 570
                   +    f  + ++ + +h  + t +    l r   ++ ++ l+ m  h+a     + l+   +  ++ ls   vvl+ +  y   +  + + rtk  +  +++   +    v ds+ n   v+ +n i+ e     ++ e l   q   ++     s ln       ++ +  i+++ +  +  g  +vg+++   g+   l   l+ + +    + ++   +e+ f+l d+++   ++p+ +r  +  ++ ++ f+ + f ++   +   + ++sf++  g+tva vg +g gk+t++ ll r ydp  + g+++i g d++ ++ +s+rks+a + qd+ l++ si+ ni+ g+ +++ e+vv+aak a  +d i +  +gydt+vgerg +lsgge+qr+aiarailk+apil+ de ts+ld +te  +   i  + ++rtt+i+ahrlst+++ d ++ l +g+++e+g+ +el++  gr+++ll   
  MMETSP1061-20121228|19462_1 237 NVGRSVFHHVHTLDMQFHLTKNTGRVSRILDRGNRSI-SFVLNAMVFHVAPTTFEVGLVTGLVYYQFGLSHAGVVLATIgaYTGFTMGITQwRTK-FRRDMNRLENQASGRVVDSLVNYETVQFFNNINYEVG---RYEESLKGYQKAAIQAQQSLSLLNfgqAAILSVGMTGIMMLTAQQILDGTATVGDLVLVNGLLFQLSVPLNFFGSVYREVSQSLLDMEHTFELIDTTTPiYNDPTRLRYDPeTMTTDIAFNRVDFAYPGKMDRpiLNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPsnDIGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQDCDEIIVLHNGQVVERGTHEELSKFAGRYTELLTVQ 724
                  4556678888999999999999999999999988876.577999*****9999999999999999999998888877652244344444441555.56677888888999******************99864...3444444444444444444444441102233578999************************99999999************************9998763799***99665167889**********98765322789**********************************4447*********************************************************************************************************************************************************************************9654 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  253.9   0.1   9.3e-78   6.6e-76     206     688 ..     220     710 ..     201     715 .. 0.93

  Alignments for each domain:
  == domain 1    score: 253.9 bits;  conditional E-value: 9.3e-78
    TIGR03375 206 kllRsylldvagkkvdlilsaklfervlglrlear.pasvGsfasqlrefesvrdfltsatltalvDLpfvllfl..lvialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmkl..pvereeekrllsreklkGeielknvsfkYpee.ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepte..GsvlldgvdirqidpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGrivadGpkdev 688
                  + lR  +   + +++  ++ +++f++v  l+++ +  + +G +++ l   +    f+ +a +++++   f + ++  lv +  g   + v+l+++ +   +++ + +  +k  +   r  +q  + +v+sl + et++  n  +    ++e++++  +k+++++++  +ll    a++  + + +++++ + +i++g+ t+G L+ ++ L      Pl+ + ++   ++q+   +e++ el+++  p  ++  +   + e++  +i++++v+f+Yp++ +++ L+n+s++i  G  va +G  G+GKst+l+ll ++y+p++  G+v++ g+d++ ++    r++++++pqd++Lf+ ++  Ni++g+   + e++++aa++a +++ + + p+G+d+ +gerG +LSgG +q va+aRa+lkd pill DEPts+lD+++e+++++++k++ +d+T ++v+Hr s ++ +d iivl +G++v  G+++e+
  MMETSP1061-20121228|19462_1 220 QELRNAVFANVTQEAIRNVGRSVFHHVHTLDMQFHlTKNTGRVSRILDRGNRSISFVLNAMVFHVAPTTFEVGLVtgLVYYQFGLSHAGVVLATIGAYTGFTMGITQWRTKFRRDMNRLENQASGRVVDSLVNYETVQFFNNINYEVGRYEESLKGYQKAAIQAQQSLSLLNFGQAAILSVGMTGIMMLTAQQILDGTATVGDLVLVNGLLFQLSVPLNFFGSVYREVSQSLLDMEHTFELIDTttPIYNDPTRLRYDPETMTTDIAFNRVDFAYPGKmDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQDCDEIIVLHNGQVVERGTHEEL 710
                  67888888889999999999************98736889*******99999999**********9999987665336778899999999999999999999999998899999999**************************************************9999999999****************************************************************98611555666777778899**************98637899************************************98667******************************************************************************************************************************************************************99876 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.2   4.4e+02     133     165 ..     137     169 ..     134     174 .. 0.81
   2 !  249.4   0.7   2.4e-76   1.7e-74     188     685 ..     215     724 ..     196     725 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 6.2
    TIGR03797 133 gaerdllavllvgllgtllglvvPlatgillde 165
                  ++++ ++  l ++l+g  +++ vP++ +il+d+
  MMETSP1061-20121228|19462_1 137 KRKQRVVLALSLMLAGKAVTIQVPYIFKILVDT 169
                  5566677777888999999999*****999997 PP

  == domain 2    score: 249.4 bits;  conditional E-value: 2.4e-76
    TIGR03797 188 gallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasram.gvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvai..avtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsfla.....fn..tafgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgkLsGaievdrvtFrYe.kdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPe..sGsvlyDGqdlekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklk..vtRiviAHRLSTirnadrilvleeGrvveqGsyeeLlakeGlfaelarRQ 685
                  +a+ fq  ++ +   + +++  ++  +v+ ++  l ++f  + ++g ++   + g ++i  +l  a++ ++  ++f +  ++ l++y++ l+ ++v+la++ +  + t+ ++ ++++ +r + +le++ sg +v+ +   + ++     +    ++ ++ +  +k +++aq+  +ll+  +a++  + ++ +++l+++++   + ++g+++      f+  + +  f +   +++++l+++ +   l + + Pi++  +   + + dp++++ +i+ +rv F+Y  k  + +L+++s++i +G+ va+vG+SG+GKSt+lrlL  F  P+   G+v+  G+dl++l++++ R+ + v+ Q++ l+ +si  ni  g+   + +++ +aa++a + + i + P g  Tv+ e g +lSGG +QR+ iAra+ +   ill DE TS LD +t + ++  ++++    t i++AHRLSTi+++d i+vl++G+vve+G++eeL +  G ++el++ Q
  MMETSP1061-20121228|19462_1 215 AASGFQELRNAVFANVTQEAIRNVGRSVFHHVHTLDMQFHLTKNTGRVSRILDrGNRSISFVLN-AMVFHVAPTTFEVGLVTGLVYYQFGLSHAGVVLATIGAytGFTMGITQWRTKFRRDMNRLENQASGRVVDSLVNYETVQFFNNINYEVGRYEESLKGYQKAAIQAQQSLSLLNFGQAAILSVGMTGIMMLTAQQILDGTATVGDLVLvngllFQlsVPLNFFGSVYREVSQSLLDMEHTFELIDTTTPIYNDPT---RLRYDPETMTTDIAFNRVDFAYPgKMDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSndIGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLgSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGrdRTTIIVAHRLSTIQDCDEIIVLHNGQVVERGTHEELSKFAGRYTELLTVQ 724
                  5667788888888888888888888899999999999999999999877655425556665555.556667778899999999**************999876115566666777888999**************************************************************9999999999999998866666666555411111331033444555567899*******************98765...66899*****************6255789**************************************6336****************************************9999989********************************************************************************96225779*****************************************98766 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.8   0.0   4.2e-73     3e-71      41     529 .]     197     696 ..     150     696 .. 0.85

  Alignments for each domain:
  == domain 1    score: 238.8 bits;  conditional E-value: 4.2e-73
    TIGR02857  41 aelltalaalalvlllRallawlkeaaaaraaaevksqlr...erllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlavi.vplvilaavltadwisalillltlPlipiF.miLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfLSslvLellatlsvAlvAVyiGlrll...........agkldlaegLlvLlLaPevylPlRqlgaqyHakaegvaaaealvevldaeeqpeaekapltaaass...slelenvsvayegrk..palkevsltvepgelvalvGaSGaGKstllklllgfvepte..GailvngaelaeldadswrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529
                  a+  + ++al++  + Ra+ + ++e   a +a  +++++r   ++++++v  l  +   +k++g+++ +l +g +++   +   + +++ +++ v lv+ ++  +  +  a ++l t+     F m ++ ++++ + r   +  ++ sg ++d +   +t++ f+  + e+ + +++ + y+++ ++  +   LS l     a lsv +  +++    l            g+l l++gLl  l +     Pl  +g+ y +  +    +e+ +e++d+++ + ++ + l+ ++++    + ++ v++ay+g++  p+l+++s+++++g++va vG SG+GKst+l+ll +f +p +  G+++++g++l++l+ ds+rk++a +pQ  +lf++++  ni+ ++ + s ++v +a+++a++++ + + p+g++t +Gerg +LSgG++qR+a+Ara+l+dap+ll DEPt++LD++te +++ +++++ + rt+++vaHrl++++++d+i+vl
  MMETSP1061-20121228|19462_1 197 AAGIPIIVALLGYGMSRAAASGFQELRNAVFANVTQEAIRnvgRSVFHHVHTLDMQFHLTKNTGRVSRILDRGNRSISFVLNAMVFHVAPTTFeVGLVTGLVYYQFGLSHAGVVLATIGAYTGFtMGITQWRTKFR-RDMNRLENQASGRVVDSLVNYETVQFFNNINYEVGRYEESLKGYQKAAIQAQQ--SLSLLNFGQAAILSVGMTGIMM----LtaqqildgtatVGDLVLVNGLLFQLSV-----PLNFFGSVYREVSQSLLDMEHTFELIDTTTPIYNDPTRLRYDPETmttDIAFNRVDFAYPGKMdrPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQDCDEIIVL 696
                  33345689999*********9999987777766666666622268******************************9987776666555544433778888888899999999999999888777366677777654.4455667899***************************************9865..4777777778999999987654....2233456777777799999998887766.....5677899999999999999999999996666666666666666557779************98899*************************************976559*****************************************************************************************************************************************************986 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.6   0.1   4.2e-66     3e-64     216     707 ..     223     722 ..     200     723 .. 0.87

  Alignments for each domain:
  == domain 1    score: 215.6 bits;  conditional E-value: 4.2e-66
    TIGR01193 216 kafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftda.s.kiidalastilslf.ldlsilvivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvirekltlGqlltfnallsyflnPleniinlqpklqaarvannrlnevylvdsefkek.kk.ltelenlngdievndvsysy.G.ygsevledislkikknekitlvGlsGsGkstlakllvkffqaes..GeillngkslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllkl.kdktiifvahrlsvakksdkiivldeGkiieqGshkellkenGfyaslih 707
                  ++ ++  ++q+  +++  s  +h+  l m+f  t+++G  vsr  d  + +i   l ++++ +    + + +++glv      +   ++l +i +y+   +  ++   k  +d+ + +   +  ++++l   et++ ++  + +  + ++ ++ y + +++ +++    +  +a++  +    i+ + a++++ +  t+G l+  n ll  +  Pl+    +   + ++ +  +   e+    +   ++  + + + e++ +di +n+v++ y G + +++l+++s++i + ++++ vG sG Gkst+ +ll +f+++++  G+++++g++lkd++  ++r++++ +Pq+ ++f+ si  n+  g+  + s e++ ka + a i+d i  +p Gy+t + e + ++sgG kqr+a+ara+l d+ +l+ de ts+ld  te  i+ ++ ++ +d+t i vahrls  +  d+iivl++G+++e G+h+el k  G y++l++
  MMETSP1061-20121228|19462_1 223 RNAVFANVTQEAIRNVGRSVFHHVHTLDMQFHLTKNTGR-VSRILDRgNrSISFVLNAMVFHVApTTFEVGLVTGLVYYQFGLSHAGVVLATIGAYTGFTMGITQWRTKFRRDMNRLENQASGRVVDSLVNYETVQFFNNINYEVGRYEESLKGYQKAAIQAQQSLSLLNFGQAAILSVGMTGIMMLTAQQILDGTATVGDLVLVNGLLFQLSVPLNFFGSVYREVSQSLLDMEHTFELIDTTTPIYNDpTRlRYDPETMTTDIAFNRVDFAYpGkMDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGN-LGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVgRDRTTIIVAHRLSTIQDCDEIIVLHNGQVVERGTHEELSKFAGRYTELLT 722
                  55666778899999999999******************8.578877422133333344444433123344466788888888888999*********99999998888888888888888899**********************************999999988887777777666666679999****************************************9999999999987666655443133145668999************5336789************************************765333***************************************99987.57788999999**********************************************************************998679********************************************9986 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  198.1   0.0   6.9e-61   4.8e-59     151     540 ..     316     710 ..     201     713 .. 0.84

  Alignments for each domain:
  == domain 1    score: 198.1 bits;  conditional E-value: 6.9e-61
    TIGR01842 151 avvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikgeitaGmiiagsilvgraLaPidqaievWkqfsaarkaykrlkelleel.pareealkl...Pep.egelevenvslvppee.kkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpas..GsvrlDgadlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereev 540
                  a   ++++ ++++ tk + ++ ++++ +a+  +  +l n e ++ +  ++  + r+e++ + + +a  +a++  + l+    ++  v  + ++ l a   ++g +t G ++    l+ +   P++   +v++++s++    ++  el++++ p  ++  +l   Pe     ++ ++v+++ p++  +++l+++sf + +G+++a +G+sg Gks++ rll   + p++  G+v + g dlk  + +++ ks+  +Pqd  Lf+ ++  ni   +     e+v++aak a++h+ i+++p+GYdt++ge+G +LsgG +qR+a+aRa+  d  +++ DeP ++LD++ e  +++ +k++  r +t+++++hr s ++  d+i+vl++G++ + G++ee+
  MMETSP1061-20121228|19462_1 316 AYTGFTMG-ITQWRTKFR-RDMNRLENQASGRVVDSLVNYETVQFFNNINYEVGRYEESLKGYQKAAIQAQQSLSLLNFGQAAILSVGMTGIMMLTAQQILDGTATVGDLVLVNGLLFQLSVPLNFFGSVYREVSQSLLDMEHTFELIDTTtPIYNDPTRLrydPETmTTDIAFNRVDFAYPGKmDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVG-RDRTTIIVAHRLSTIQDCDEIIVLHNGQVVERGTHEEL 710
                  33333333.234444433.4555566666667777899*********************************99999998888899999999***********************************************999999999987514455555553345542567999****9988762679***********************************9887555****************************************988888899******************************************************************************96.6678899**************************99986 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.8   0.0   8.9e-61   6.3e-59     121     530 .]     274     684 ..     181     684 .. 0.81

  Alignments for each domain:
  == domain 1    score: 197.8 bits;  conditional E-value: 8.9e-61
    TIGR02868 121 dalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRie...evldakvevaeasapaaeaaas..ekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplk..GevtldgvsvaslsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530
                    + + +v  + P    + ++   v   + l + a++vla + + +++ + + + r +    + ++rl ++ + +++d l + ++ +++   +  + ++ee  + + +a+ +a++   l +  +++++ + +++ +++  ++++dg+    ++  lvL++  +f+   +l      +++v +++  +e   e++d+   ++  ++p+   + +   + ++ ++++ ++ypg+    +l+++s+++++G+ va vG sG+GKst+l ll ++ dp++  G+v++ g ++++l+ +  r+ v+v++qd  lF+ ++  N+  ++   + e++ +a ++++++d + ++pdG+dt++ge+g  lSGGe+qR+a+ARa+l+dap+ll DEPt +LD +te+++++ + ++ ++rt+++v+hrl
  MMETSP1061-20121228|19462_1 274 SFVLNAMVFHVAPTTFEVGLVTGLVYYQFGL-SHAGVVLATIGAYTGFTMGITQWRTK--FRRDMNRLENQASGRVVDSLVNYETVQFFNNINYEVGRYEESLKGYQKAAIQAQQSLSLLNFGQAAILSVGMTGIMMLTAQQILDGTA---TVGDLVLVNGLLFQLSVPLNFFGSVYREVSQSLLDMEhtfELIDTT--TPIYNDPTRLRYDPetMTTDIAFNRVDFAYPGKMDrpILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRL 684
                  4455555555555555444444444444444.45778888888888888876655543..3456778899999999999999999999999999999999999999888888888888877777777777777777777778888864...5667888888888888888888888888888888777444777777..66777777776666335778999********987667**************************************8766*******************************************************************************************************************************************96 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0      0.49        34      50     105 ..     393     450 ..     383     458 .. 0.81
   2 !  122.1   0.0   7.1e-38     5e-36      15     230 ..     501     710 ..     485     719 .. 0.91

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.49
    TIGR00972  50 lndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp..msiydnvayg 105
                   + ++ +v ++G ++l+ ++i d +  v  l    G++fq   p +   s+y  v+ +
  MMETSP1061-20121228|19462_1 393 GQAAILSVGMTGIMMLTAQQILDGTATVGDLVLVNGLLFQLSVPLNffGSVYREVSQS 450
                  55666778899*****************************987755327999988765 PP

  == domain 2    score: 122.1 bits;  conditional E-value: 7.1e-38
    TIGR00972  15 ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqi 230
                    l++++++i++ k +a++G sGcGkst+lr l r+ d  ++    G+v + g+d+ d +l   ++rk+v ++ q    f  si  n+ yg   +  +d  +  + ++   +  ++ d   + + + +l+LsGG +qr++iara+  +  +lL DePts+LD+++ + i   i+++ ++ t +iv h ++  +   d+++++++G++ve g+ e++
  MMETSP1061-20121228|19462_1 501 PILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSND---IGNVSIGGHDLKDLNL--DSFRKSVAVIPQDTVLFHESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQD-CDEIIVLHNGQVVERGTHEEL 710
                  4799**********************************9966...5**********98755..579*************************9999999988888888888889999*************************************************************************87655.699*************99987 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0   4.1e-37   2.9e-35      10     206 .]     499     696 ..     495     696 .. 0.84

  Alignments for each domain:
  == domain 1    score: 119.4 bits;  conditional E-value: 4.1e-37
    TIGR03608  10 dkeilkklslkiekGelvaivGesGsGKstlLnilgllekk..dsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenle...lalklkkkskkekekkkkevlekv..glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrviel 206
                  d+ il++ls++i +G++va vG+sG+GKst+L +l ++ ++  d g+v + g++   lk+ +  + +r++++ + q+  L  +e++ +n++   l+   +   k  k+ k+ +++ ++  g ++   ++  +lsgGekqRva+ar++lk+++++l DEPt+sLD+++++ +++ +k++ + ++t iiv H  +  + +d++i l
  MMETSP1061-20121228|19462_1 499 DRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPsnDIGNVSIGGHD---LKDLN-LDSFRKSVAVIPQDTVLF-HESIGYNIQygnLGSSWEDVVKAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGR-DRTTIIVAHRLSTIQDCDEIIVL 696
                  789********************************99876511679*******9...55554.45568899******9988.589*****82224445556667777888888888774456788889999********************************************99865.67778899************975 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0      0.51        36    1256    1310 ..     104     158 ..      94     171 .. 0.89
   2 !  116.3   0.0   2.5e-36   1.8e-34    1287    1511 ..     487     715 ..     406     731 .. 0.88

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.51
    TIGR00957 1256 lkeysetekeapwqieetappsswpksgrvefrnyslryredldlvlrdlnvtie 1310
                   + e  + ek++p +i  t     wp+ g  e r+   r    l l+l   +vti+
  MMETSP1061-20121228|19462_1  104 VTEEQNKEKKSPLRIPRTLAKYVWPNDGSPESRKRKQRVVLALSLMLAGKAVTIQ 158 
                   6677889****************************99999999999988888876 PP

  == domain 2    score: 116.3 bits;  conditional E-value: 2.5e-36
    TIGR00957 1287 frnyslryredldl.vlrdlnvtieggekvgivgrtgagkssltlglfrinesae..geiiidglniakiglhdlrfkltiipqdpvlfsgslrmnldpfsq.ysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqqrg 1511
                   f    + y  ++d  +l++l+ +i  g+ v  vg +g+gks++   l+r  + ++  g++ i g ++ ++ l  +r  +++ipqd vlf  s+  n++  +   s e+v  a + a+++d + + pd+ d    e g +ls g++q v +ara+l+ + il+ de t+++d +t+  i + i+    d t + +ahrl ti d   ++vl +g+v e ++  el +  g
  MMETSP1061-20121228|19462_1  487 FNRVDFAYPGKMDRpILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLgSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQDCDEIIVLHNGQVVERGTHEELSKFAG 715 
                   555555666666643899*******************************998765459**************************************98654314679*****************************************************************************99*******************************999998876655 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   4.7e-36   3.3e-34       3     234 ..     486     711 ..     484     716 .. 0.88

  Alignments for each domain:
  == domain 1    score: 116.2 bits;  conditional E-value: 4.7e-36
    TIGR02315   3 evenlskvypn..gkqalknvnleikkGelvaviGlsGaGkstllrsinrlveiss..gsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasseld 234
                   +++++  yp+  ++ +l+n++++i +G+ va +G sG Gkst+lr + r+ ++s+  g++ + g+++++    +l ++rk++++i q+  l +  ++  n+  g lg+   ++ +++  ++++ +  + +    g + +  +r  +LsGG++qRvaiaRa+++++ ++l+DEP++sLD ++ + +m  +k++ +++  t+i+  H+++  +  +d i+ l++g++v +g+ +el+
  MMETSP1061-20121228|19462_1 486 AFNRVDFAYPGkmDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKD---LNLDSFRKSVAVIPQDTVLFH-ESIGYNIQYGNLGS--SWEDVVKAAKQAKIHDTIMSFPD-GYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDR--TTIIVAHRLSTIQD-CDEIIVLHNGQVVERGTHEELS 711
                  67788888886224569************************************87634799999999985...578999**********88776.57889*******96..69999999888888887777765.89999*****************************************************9865..666778***99876.9************999999886 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  114.2   0.0     2e-35   1.4e-33       2     203 ..     485     690 ..     484     700 .. 0.79

  Alignments for each domain:
  == domain 1    score: 114.2 bits;  conditional E-value: 2e-35
    TIGR02673   2 ielekvskeyaagv..eaLkdvslkiekgeflfltGasGaGkttllklllgaekpsr..GevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenva...lalevrgkkeeeiqkrveevlelv..gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelverv 203
                  i +++v ++y++++   +L+++s++i +g+ +  +G sG Gk+t+l+ll+    ps+  G+v++ g+d+++l   +l ++R++++v+ qD  l++  ++  n+    l  + +   +++ q ++++++     g +  + +   +lsgGe+qRvaiaRai+++ ++ll DePt  lD++++++i++ +k++ +  tt+iva h  + ++  
  MMETSP1061-20121228|19462_1 485 IAFNRVDFAYPGKMdrPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDL---NLDSFRKSVAVIPQDTVLFH-ESIGYNIQygnLGSSWEDVVKAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVA-HRLSTIQDC 690
                  6899******96551169*********************************99997656********98877...6899***********87665.5666677511133334444455555556555544333555666777889*************************************************9999987.666666655 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.5   0.0   1.2e-33   8.6e-32       2     214 ..     485     699 ..     484     701 .. 0.79

  Alignments for each domain:
  == domain 1    score: 108.5 bits;  conditional E-value: 1.2e-33
    TIGR00960   2 ikfeqvskaykgaa.elaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsa..GkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvyd....nvalalriiGvkgreieervsaalekvGlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskG 214
                  i f++v  ay+g + ++ l+n++++i++G+ v +vG sG+Gkst+l+l+     ps+  G++ + g+dl+ l   ++  +r+ + ++ qd  l+++   y+    n+  + + + + +++++   ++     G      +   +lsgGe+qrvaiara++++ ++ll dePt+ ld+++  di+  +++v r  tt++va h  + +++    +++l++G
  MMETSP1061-20121228|19462_1 485 IAFNRVDFAYPGKMdRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDL---NLDSFRKSVAVIPQDTVLFHESIGYNiqygNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVA-HRLSTIQDCD-EIIVLHNG 699
                  789********9863799**********************************99986559*******98655...68899**********98877765443111133333333333333333332232333477888888899*****************************************************9997.6666666654.45566666 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.4   0.0   2.4e-33   1.7e-31       5     222 ..     488     713 ..     484     723 .. 0.87

  Alignments for each domain:
  == domain 1    score: 107.4 bits;  conditional E-value: 2.4e-33
    TIGR03864   5 eglsfayg...krralddvsltvakgefvaLLGpnGaGkstLfslltrLyeak..egeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryh...aaLhGlsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaae 222
                  ++++fay    +r +l+++s+++++g+ va +G  G Gkst++ ll r y+ +   g++++ G+dl++ + + +++   v  q t+    s+  n++y    ++ + + +a+ +++i++++  +  g      e+  +L+GG+++rv iara+l +  +LL De+t  LD ++ ++++++++++ r++   +    h +  +++ d+++vlh+G+v+ +G+ +el++ 
  MMETSP1061-20121228|19462_1 488 NRVDFAYPgkmDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSndIGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGnlgSSWEDVVKAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTII--VAHRLSTIQDCDEIIVLHNGQVVERGTHEELSKF 713
                  566667741224679***********************************8652279*******************99999999**9***********633357788999999999999888764466777889999***********************************************97765444..57999*************************9874 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.6   0.0   3.5e-32   2.5e-30    1231    1429 ..     499     701 ..     482     723 .. 0.92

  Alignments for each domain:
  == domain 1    score: 102.6 bits;  conditional E-value: 3.5e-32
    TIGR01271 1231 gravlqdlsfsveagqrvgllgrtgsgkstllsallrll...stegeiqidgvswnsvtlqkwrkafgvipqkvfilsgtfrknldpyeq.ysdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssv 1429
                    r +l++lsf +  g++v ++g +g+gkst+l  l r+    +  g+++i g   + + l+ +rk+  vipq   ++  ++  n++  +   s e++ k a++  ++  i  fpd  d v+ + g  ls g kq + +ar+il  a ill dep++ ld  t   i   +kq   + t i+  hr+ ++ +c++++v+ + +v
  MMETSP1061-20121228|19462_1  499 DRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYdpsNDIGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYGNLgSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQDCDEIIVLHNGQV 701 
                   588**********************************97221445999*************************************86654156799****************************************************************************************************9988776 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.4   0.0   8.4e-32     6e-30       9     217 ..     503     710 ..     499     722 .. 0.84

  Alignments for each domain:
  == domain 1    score: 102.4 bits;  conditional E-value: 8.4e-32
    TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrliePta..GkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkide...qerkekalealklv..dleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdei 217
                  +n+++++i +G  + ++G sG+Gkst++rll r+ +P++  G++ i G+d+ +++ + +    rk +a++ q+  lf h +i  ni++g     +++     ++ k  +++     + +  + +   +lsGG +qrv +ara+  + ++ll de+ s+ld  + +++   ++++    ++t + ++h l  +++ +d i++l++G++v  Gt +e+
  MMETSP1061-20121228|19462_1 503 LNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSF----RKSVAVIPQDTVLF-HESIGYNIQYGNLGSSWEDvvkAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVG--RDRTTIIVAHRLS-TIQDCDEIIVLHNGQVVERGTHEEL 710
                  5899*********************************96669*********99998888....99999888888777.9********99876666651104555555555543321234445556668*****************************************999876..5799999*****6.7999*****************9996 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.8   0.0   2.2e-31   1.5e-29      36     257 ..     498     713 ..     466     720 .. 0.85

  Alignments for each domain:
  == domain 1    score: 100.8 bits;  conditional E-value: 2.2e-31
    TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekv...eakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavkf 257
                    + +l+n s ++ +G+ +A +GsSG GK+T+l  l        ++ g+v + G+ +   + + +r+  a + qd +++   ++  ++++       +++ k  k++++++ +  ++  +  dt++g  g    lSgGe++R+a+a  +l+d ++L+cDEPTs+LDs + + ++  +k++ + ++t+i+  H  s    +  d+ii+l +G+vv +G+ ee+ kf
  MMETSP1061-20121228|19462_1 498 MDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNDI-GNVSIGGHDLkdlNLDSFRKSVAVIPQDTVLFHE-SIGYNIQYGNLGSSWEDVVKAAKQAKIHDTI--MSFPDGYDTVVGERGL--KLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVA-HRLST--IQDCDEIIVLHNGQVVERGTHEELSKF 713
                  46789******************************99888887788.89*****875222679999******999988876.455567777666777889999********88..7899********7775..8***********************************************999988765.87664..6889********************999 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0       1.1        80       6      51 ..     242     287 ..     239     295 .. 0.82
   2 !   98.6   0.0   1.1e-30     8e-29      17     209 ..     506     703 ..     487     707 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 1.1
    TIGR01277   6 viyeykhlplefdlsveaGervailGesGaGkstllnliaGflepa 51 
                  v ++ ++l ++f+l+ ++G    il       s +ln +   + p+
  MMETSP1061-20121228|19462_1 242 VFHHVHTLDMQFHLTKNTGRVSRILDRGNRSISFVLNAMVFHVAPT 287
                  6677899************999999988888888888877777666 PP

  == domain 2    score: 98.6 bits;  conditional E-value: 1.1e-30
    TIGR01277  17 fdlsveaGervailGesGaGkstllnliaGflepas..Geikvndkd..htrsapyerpvsmlfqennlfahltvrqniglG...lkpglklnavqkekvedvarqv..GiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                  +++ + +G+ va +G sG Gkst+l l+  f  p +  G++ + ++d   +++  +++ v+++ q+  lf h ++  ni  G         ++a ++ k++d   +   G +  +     +lsGG++qrva+ar ++++ pill dep s+ld +   ++++ +k++   +++t ++v+h+ls ++   ++++v+++G++  
  MMETSP1061-20121228|19462_1 506 LSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDlkDLNLDSFRKSVAVIPQDTVLF-HESIGYNIQYGnlgSSWEDVVKAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVG--RDRTTIIVAHRLSTIQ-DCDEIIVLHNGQVVE 703
                  4567889***************************965699999877611577889************999.7889999976520045556789*********998866699999999999**********************************************96..77899*******9765.6799********965 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.1   0.0     9e-31   6.4e-29      22     240 ..     498     712 ..     487     724 .. 0.87

  Alignments for each domain:
  == domain 1    score: 99.1 bits;  conditional E-value: 9e-31
    TIGR02769  22 qrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPak..GevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreii..gePlrhltsldeserkariae.llelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikvaells 240
                    +++l+n+s+++ +G+tva++G+sG+Gkst+ rll  +  P++  G+vs  G+dl+ l+ +   +fr+ v ++ qd++     ++s++  i  g+    ++++ +++++a+i++ +++  +  + v+  +  +lsGG  qr++iara+  +  +++ de  s+ld      i+  +k++ ++   + ++++h l+ +q  +++++vl++Gq+ve+ +  el  
  MMETSP1061-20121228|19462_1 498 MDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLD---SFRKSVAVIPQDTV---LFHESIGYNIqyGNLGSSWEDVVKAAKQAKIHDtIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDR--TTIIVAHRLSTIQD-CDEIIVLHNGQVVERGTHEELSK 712
                  56789************************************98666************9976...599*********75...45666666661145557899**********98725566688899999***********************************************99987765..56899******997.9*************977666554 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.5   0.0   2.8e-30     2e-28      16     220 ..     506     711 ..     502     727 .. 0.85

  Alignments for each domain:
  == domain 1    score: 97.5 bits;  conditional E-value: 2.8e-30
    TIGR02142  16 vdlelpgkgvtalFGrsGsGktslirliaGLtrpde..geivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee..rriseekvielL.....giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevl 220
                  +++++p    +a  G+sG+Gk++++rl+     p++  g++++ g+ l+d    + l   ++ v+++ q+  LF H s+  n++YG   ++ e+  + ++++k+ + +     g + ++  +  kLsGGekqRvai+RA+L +  +Ll DeP ++LD++  ++i+ +++++ ++ +   + v+H l+ ++   d+++vl++G+v   g+ ee+ 
  MMETSP1061-20121228|19462_1 506 LSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKD----LNLDSFRKSVAVIPQDTVLF-HESIGYNIQYGNLGSSWEDvvKAAKQAKIHDTImsfpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRT--TIIVAHRLSTIQD-CDEIIVLHNGQVVERGTHEELS 711
                  67888988899*******************99885433999999998865....78999**************9.99*********8655444311234444444433223348999******************************************************98865..6889*******98.699**************99986 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.5   0.0   4.7e-30   3.3e-28      20     228 ..     502     710 ..     489     724 .. 0.79

  Alignments for each domain:
  == domain 1    score: 96.5 bits;  conditional E-value: 4.7e-30
    TIGR02314  20 aldnvslfvpkgqifgvigasgagkstlircvnllekpts..gavivdgkdlttlsnaelvkarrqigmifqhfnllss....rtvfgnvalplelentpkekikrkvtel.lal.vglsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvsei 228
                   l+n+s+++p+g+ +  +g+sg gkst++r +  +  p++  g+v + g+dl  l   +l   r+ + +i q   l+         +gn+    e  +  k   + k+ +  +++  g           lsgg+kqrvaiara+  +  +llcde ts+ld  t   i++ +k++ r    t ++++h +  ++  cde+ v+++g+++e+gt  e+
  MMETSP1061-20121228|19462_1 502 ILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDL---NLDSFRKSVAVIPQDTVLFHEsigyNIQYGNLGSSWE--DVVKAAKQAKIHDTiMSFpDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDR--TTIIVAHRLSTIQD-CDEIIVLHNGQVVERGTHEEL 710
                  69**********************************99976699******98766...6888899999999998776541111344566555554..44444444444432022214555566667789***********************************************975..667899****9976.*****************9886 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.7   0.0   7.2e-29   5.1e-27      14     220 ..     496     702 ..     488     703 .. 0.84

  Alignments for each domain:
  == domain 1    score: 92.7 bits;  conditional E-value: 7.2e-29
    TIGR02211  14 gkleievlkgvsleiekgelvaivGssGsGkstllhllggldkpts..GevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamPlliskks.kkeakerak....ellekvglekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                  gk++  +l+++s++i +g++va vGssG Gkst+l ll  + +p++  G+v + G++l+ l+ +   ++r k++  i q   l+ + ++  n+    l s+ + + +a+++ak     +    g +  + ++  +lsGGe+qrvaiara++++  ++l+dePt+ ld++t + i++ ++++ +++ t  ++v+h l+ ++  d+ + l++g+++
  MMETSP1061-20121228|19462_1 496 GKMDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLD---SFR-KSVAVIPQDTVLFHE-SIGYNIQYGNLGSSWEdVVKAAKQAKihdtIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTT--IIVAHRLSTIQDCDEIIVLHNGQVV 702
                  788899***********************************99986669*********999755...566.578889887666655.78889999988776441444444443111033334478888999999***********************************************999876..899*******************986 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.0   0.0   6.2e-29   4.4e-27      19     222 ..     502     710 ..     492     715 .. 0.84

  Alignments for each domain:
  == domain 1    score: 93.0 bits;  conditional E-value: 6.2e-29
    TIGR03265  19 alkdislsvkkgelvclLGPsGCGkttLLriiaGLek..qdaGaillggrditrlp..pqkrdyGivfqsYaLfPnltvaeniayGLknkklkreevaerveelLelv.....glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeei 222
                  +l+++s+++ +g  v+++G sGCGk+t+Lr++  + +  +d G++ +gg+d+ +l   + ++   ++ q  +Lf +  +  ni+yG  ++  +    a++ +++ +++     g +++      +lsGG +qrva+ara+     +LL DeP s+LD++    + + +k++ r    tti+v+h     ++ +D i+v+ +g++   gt ee+
  MMETSP1061-20121228|19462_1 502 ILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDpsNDIGNVSIGGHDLKDLNldSFRKSVAVIPQDTVLFHE-SIGYNIQYGNLGSSWEDVVKAAKQAKIHDTImsfpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRD--RTTIIVAHRL-STIQDCDEIIVLHNGQVVERGTHEEL 710
                  799*****************************9986511578**********9765216688999*********87.899******887766655444444444444322233555666667779**********************************************995..69******86.578999****************9997 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   2.6e-28   1.9e-26      13     223 ..     499     709 ..     496     713 .. 0.85

  Alignments for each domain:
  == domain 1    score: 90.7 bits;  conditional E-value: 2.6e-28
    TIGR03873  13 grlivddvdvtaPaGaltgllGPnGsGkstllrllaGllap..daGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarve.lss.ladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppae 223
                   r+i++++    P+G+  + +G  G+Gkst+lrll     p  d G+v+++g+dlk l+  +  + va++ qd+      s+   +  G +        ++++ a++ d +++  +  ++ + +r    lsGGe+qrv +ara+ ++  +ll dePt  ld ++  ++++ +++   +++t++va h l+  ++ cd+++vl++G+vv  G+ +e
  MMETSP1061-20121228|19462_1 499 DRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPsnDIGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLF-HESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDgYDTvVGERG-LKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVA-HRLST-IQDCDEIIVLHNGQVVERGTHEE 709
                  5899**********************************9983356***************************98654.446677778888776655567888899999999987551444145555.57*********************************************96666666665.99985.688**************998765 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.1   0.0   1.1e-28   8.1e-27       9     217 ..     503     716 ..     498     732 .. 0.84

  Alignments for each domain:
  == domain 1    score: 92.1 bits;  conditional E-value: 1.1e-28
    TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPds..GtarvaGyDvvr.epdevRrsigvvpqkasvdedLtar..enlellgelyglpkkeaeeraeellelvelke..aadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgk 217
                  ++++++++++g+ ++++G  G GK+t++++L     P++  G++ + G+D+   + d+ R+s++v+pq++ + ++  ++  +  +l ++  ++ k+++++++++ +  +   +     ++  ++sgG ++r+ +a++++++  +l  DEPt+ LD++t   i   i+++ ++ +ti+  +h l  ++  +d+++++++G+++  +t eeL +  g 
  MMETSP1061-20121228|19462_1 503 LNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDlNLDSFRKSVAVIPQDTVLFHESIGYniQYGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYdtVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTII-VAHRLSTIQ-DCDEIIVLHNGQVVERGTHEELSKFAGR 716
                  6899*********************************86559999*****9764778*************999988886224556778888999*******99987766544311234455579*******************************************9988776666.579999886.5*********************876554 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.8   0.0   5.4e-28   3.8e-26       8     228 ..     484     711 ..     479     721 .. 0.81

  Alignments for each domain:
  == domain 1    score: 89.8 bits;  conditional E-value: 5.4e-28
    TIGR03258   8 Gvvleslrvaygarv...vlddlsleieaGellallGksGsGkttllravaGfvkadG..Grllvadrdlth..lppykrnlallvqnyalfphlkveenvafGlrark...qskaliaervadalklv..qlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetraly 228
                   + ++ +  ay +++   +l++ls++i  G+ +a +G sG+Gk+t+lr++  f  ++   G++ ++++dl    l  +++++a++ q+  lf h  +  n+ +G          ka  + ++ d++     +   +  +   +lsGG +qrva+ara+  +  +ll dep s+ld+q  ++++  +k++ r+    t ++v+h r  ++   d i ++++G++++ G+ ++l 
  MMETSP1061-20121228|19462_1 484 DIAFNRVDFAYPGKMdrpILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDlnLDSFRKSVAVIPQDTVLF-HESIGYNIQYGNLGSSwedVVKAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRD---RTTIIVAH-RLSTIQDCDEIIVLHNGQVVERGTHEELS 711
                  5666777777766433339************************************98888**********87225799***********999.889999**999665540114455555555565544411223334556789*********************************************9985...57778888.6678999*****************98885 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0   9.6e-28   6.8e-26      10     219 ..     493     701 ..     485     702 .. 0.81

  Alignments for each domain:
  == domain 1    score: 89.0 bits;  conditional E-value: 9.6e-28
    TIGR02982  10 yygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglr..svqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrma...lelkeklsakeakakaeelleav..gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                   y  g++ + +l++++++i +g  v + G+sG+Gk t+l l+  +   s   G++++ g++lk++   +l   r+++ +i q   l++      n++ +      ++   +++++ak ++ + +   g +  +  +  +lsgG kqrvaiara+ +   ++l dePt++ld+++  ++++ ++++ r+++   ++v+h    ++ +d i+ + +G++
  MMETSP1061-20121228|19462_1 493 AY-PGKMDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYdpSNDIGNVSIGGHDLKDL---NLDSFRKSVAVIPQDTVLFHES-IGYNIQYGnlgSSWEDV-VKAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRT--TIIVAHRLSTIQDCDEIIVLHNGQV 701
                  44.489999*********************************9987224567*********9887...57889************99864.45677765110444444.44444455555444433377889999999************************************************9985..5789999888888999999999986 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   2.2e-27   1.6e-25      15     220 ..     502     712 ..     495     720 .. 0.83

  Alignments for each domain:
  == domain 1    score: 87.9 bits;  conditional E-value: 2.2e-27
    TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaGlekp..dsGrilleGrdvtrvkvr..dreiGfvfqhyalfkhltvrdniafGleir...kkdkakikakveellelv..qleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220
                  +l+++++++++G+ va++G sG Gkst+lr++  + +p  d G++ + G+d   +++   ++++  + q+  lf h ++  ni +G          ka+++ak+++ +     + + +      +lsGG++qrva+ara+  +  +ll dep ++ld++   ++ + ++++  +   tt++v+h  +   +  d+i+vl++G++ + g+ ee+++
  MMETSP1061-20121228|19462_1 502 ILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPsnDIGNVSIGGHDLKDLNLDsfRKSVAVIPQDTVLF-HESIGYNIQYGNLGSsweDVVKAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRD--RTTIIVAHRLSTI-QDCDEIIVLHNGQVVERGTHEELSK 712
                  6999****************************9997653378**********9877652267888888888888.889*****998543312255666777777665433322456666667889*********************************************9875..69******98765.5589***************999875 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   1.9e-26   1.4e-24      17     224 ..     502     715 ..     494     729 .. 0.90

  Alignments for each domain:
  == domain 1    score: 85.0 bits;  conditional E-value: 1.9e-26
    TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylka..dsGsvavagedvlknsle.vrkniGylPehnPlyldl..yvreylefsaalyklkgrklkkrveelielv..GlkaeqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkivadkkleelkaaek 224
                  +l+++sf++ +G+ v f+G  G Gkst++++l  +  +  d G v + g+d  + +l+  rk++  +P+   l+ +   y  +y ++ ++  ++ + +++ ++++ i     G  +    +  +ls G +qrv +a+a+l d  +l+ dePt+ ld     +i   ik++++d+t i+ +h +  ++  cd++i++++G++v   + eel+++  
  MMETSP1061-20121228|19462_1 502 ILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPsnDIGNVSIGGHDLKDLNLDsFRKSVAVIPQDTVLFHESigYNIQYGNLGSSWEDVVKAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQD-CDEIIVLHNGQVVERGTHEELSKFAG 715
                  799********************************9873356*********99877652799************996569999***********9999*******9988644777777778889**************************************************************97.****************9999988754 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.7   0.0   3.6e-26   2.5e-24       3     213 ..     504     710 ..     502     721 .. 0.81

  Alignments for each domain:
  == domain 1    score: 83.7 bits;  conditional E-value: 3.6e-26
    TIGR02770   3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrg..reialilqnPrsafnPl.ltikeqlletlkaleklskqakelivealeavgLeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkel 213
                  +++++++ +gk +a+vG sG+Gks+    +  + d+  ++  G++ + g++l++l+l +  +++a+i q+ +   + + ++i+    +   + e + k ak+  ++    +  +  ++v+ +   +lsGG  qRv ia a+l +ap+l+ DePt+ lD +++  ++ +++++ ++r +  ++++h l+ +  + de++v+++G++vergt +el
  MMETSP1061-20121228|19462_1 504 NNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDP--SNDIGNVSIGGHDLKDLNLDSfrKSVAVIPQDTVLFHESIgYNIQ--YGNLGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTT--IIVAHRLSTIQDC-DEIIVLHNGQVVERGTHEEL 710
                  799**********************99999999996..5667**********9996654227788888887765555523444..333334444444444444444444444456799****************************************************99877655..789*******886.9**************99886 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0     8e-11   5.7e-09      19      65 ..     498     544 ..     491     575 .. 0.86
   2 !   48.0   0.0   3.2e-15   2.3e-13     150     206 ..     626     682 ..     623     698 .. 0.88

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 8e-11
    TIGR02324  19 vklpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgri 65 
                  + +p+l+++s+++ +G+ va+ G+sG Gkst+l+ ly+ Y p++   
  MMETSP1061-20121228|19462_1 498 MDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNDIG 544
                  6789*************************************987544 PP

  == domain 2    score: 48.0 bits;  conditional E-value: 3.2e-15
    TIGR02324 150 fsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligif 206
                   sGGekqRv iara+++d PiLL dePt+sLd+++   ++  ik++ ++++++i   
  MMETSP1061-20121228|19462_1 626 LSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAH 682
                  69**********************************999999999999999998654 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   4.5e-26   3.2e-24      14     221 ..     501     712 ..     487     723 .. 0.83

  Alignments for each domain:
  == domain 1    score: 83.5 bits;  conditional E-value: 4.5e-26
    TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvks..GeielegeditklkpeervkaGiayvpqGreifpkltveenlelglealkkk.......ekkipeeiyelFP.vlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeelde 221
                   +l+++s+++++g++va +G  g Gk+t+l+ l   ++ ++  G++++ g+d+++l+  +  ++ +a +pq   +f + ++  n++ g   ++ +       + ki+++i++ FP   +++   rg +LsGG +q +aiaRa++++  +ll DePt  +     ++i + ik++ ++   + ++v + l+  ++  d+++vl++G+vv++g++eel++
  MMETSP1061-20121228|19462_1 501 PILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNL-DSFRKSVAVIPQDTVLFHE-SIGYNIQYGNLGSSWEdvvkaakQAKIHDTIMS-FPdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRD--RTTIIVAHRLSTIQD-CDEIIVLHNGQVVERGTHEELSK 712
                  59********************************999876445**********99976.568999******9988876.788888877533222112222336667777765.66157788999*************************************************9875..456667788887777.8****************999875 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.8   0.0   6.9e-26   4.9e-24       2     188 ..     519     710 ..     518     717 .. 0.87

  Alignments for each domain:
  == domain 1    score: 82.8 bits;  conditional E-value: 6.9e-26
    TIGR01187   2 LGpsGsGkttlLrllaGleel..dsGkilldgedvt..evpaekrsvnvvfqsyaLfPhmtveenvafg.L..kmrkvpkaeikervkeaLelv..qleefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeei 188
                  +G+sG+Gk+t+Lrll  + ++  d G++ ++g+d+   +  + ++sv v+ q+  Lf h ++  n+ +g L    + v ka  ++++++ +       +++   +  +lsGG +qrva+ara+ k   iLL Dep s+LD +    + + +k++ +    t+++v+h     +   d i vl++G+++  g+ ee+
  MMETSP1061-20121228|19462_1 519 VGSSGCGKSTILRLLYRFYDPsnDIGNVSIGGHDLKdlNLDSFRKSVAVIPQDTVLF-HESIGYNIQYGnLgsSWEDVVKAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRD--RTTIIVAHRL-STIQDCDEIIVLHNGQVVERGTHEEL 710
                  79****************9873357**********8224568899***********9.99********842225678889999999999876652246778889999**********************************9999999999999886..59******76.57999*****************9997 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   0.0   3.1e-25   2.2e-23       6     183 ..     501     681 ..     495     686 .. 0.85

  Alignments for each domain:
  == domain 1    score: 80.6 bits;  conditional E-value: 3.1e-25
    TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPks..GkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdi....sglee...rpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvis 183
                   +l++l++++ +g+++a++G+ G+Gkst+l+ l     P +  G+v ++G++l+    +l + rk va++ qd    lf  ++  ++ +g  nlG s ++v +  ++a     i    +g++        +lsgGek+rvaia a+   + +ll dePt++ld++ ++ +++ ++++  + +t++++
  MMETSP1061-20121228|19462_1 501 PILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLK--DLNLDSFRKSVAVIPQD--TVLFHESIGYNIQYG--NLGSSWEDVVKAAKQAKIHDTImsfpDGYDTvvgERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVA 681
                  389************************************75559******9886..57899*********997..58************9..999999998888777765444411122333311144568*************************************************9999997 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.0   2.4e-21   1.7e-19      15     234 ..     502     710 ..     497     717 .. 0.78

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 2.4e-21
    TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmtlet..ideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapvlvkGvaraeaekravelldmv....GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdei 234
                  +l++l++++ +G+ va +G sG Gkstilr+l  +     d G++ + g+ l  ++             l   r+ + ++ q   lf h+++  n+    +        +a k+a     ++    G      +   +lsGG+kqrvaiara+     +ll de+ts+ld +   ++++ +++++   d t ++v+h++   ++ +d ++ +++G++ve+G  +e+
  MMETSP1061-20121228|19462_1 502 ILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDpsNDIGNVSIGGHDLKDLN-------------LDSFRKSVAVIPQDTVLF-HESIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIMsfpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGR--DRTTIIVAHRLSTIQD-CDEIIVLHNGQVVERGTHEEL 710
                  7999***************************9876541134477777666555544.............677788888888887777.77777777777665544444444444433333330011555555666789*********************************************986..67999*******9999.5889999**********9997 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   1.9e-21   1.3e-19       1     194 [.     503     702 ..     503     713 .. 0.83

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 1.9e-21
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekpts..gavilegkeitepgpdr....mvvfqnysllpwltvrenial.avdavlrdlskserreiveehielv..glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaa 194
                  l++++++i +g+ ++++g sgcgkst+l l+  +  p++  g v++ g+++++   d     + v+ + ++l   ++  ni    + +  +d+ k+ +++ ++++i     g  +    r  +lsgg kqrvaiara+     +ll dep  +ld+ t +++  ++ ++ +++  t+++v+h +  ++  +d +++l ng   
  MMETSP1061-20121228|19462_1 503 LNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSfrksVAVIPQDTVLFHESIGYNIQYgNLGSSWEDVVKAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDR--TTIIVAHRLS-TIQDCDEIIVLHNGQVV 702
                  678999*******************************96559*******9998877641122445556666777888888876257889999999999999999887643478899999*********************************************999998765..7788889875.56677888888887655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   3.2e-20   2.2e-18     941    1149 ..     498     712 ..     354     733 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 3.2e-20
    TIGR01257  941 sgrpavdrlnitfyenqitaflghngagktttlsiltgllppts..gtvlvggkdie.tnldavrqslgmcpqhnilfhhltvaehilfyaqlkgrsweea.qlemeamledt......glhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsgrtiimsthhmdeadllgdriaiisqgrlycsgtplflkn 1149
                   + rp ++ l   + + +  af+g  g+gk+t l +l  +  p+   g v +gg+d++  nld+ r+s+ + pq  +lfh      + + y +l g swe+  +   +a + dt      g      e    lsgg ++++++a a++ da +++ depts +d  +   i   + +    rt i+ +h +   +   d i ++ +g++   gt   l +
  MMETSP1061-20121228|19462_1  498 MDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKdLNLDSFRKSVAVIPQDTVLFHESI--GYNIQYGNL-GSSWEDVvKAAKQAKIHDTimsfpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQ-DCDEIIVLHNGQVVERGTHEELSK 712 
                   57999999999999999***********************99854599*******9627*******************9753..455678887.778876425666788888733333355666789999***********************************************99*********998765.468899999999988888766655 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00012    0.0087      14      57 ..     501     544 ..     492     552 .. 0.82
   2 !   48.7   0.0   1.3e-15   9.2e-14     168     258 ..     625     712 ..     619     725 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00012
    TIGR03269  14 evlknisleleeGevlGilGksGaGksvllhllrGldeyeptsG 57 
                   +l+n+s+++ +G+ +  +G sG+Gks +l+ll    +  ++ G
  MMETSP1061-20121228|19462_1 501 PILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNDIG 544
                  58999999999999999999999999999999876655555555 PP

  == domain 2    score: 48.7 bits;  conditional E-value: 1.3e-15
    TIGR03269 168 dlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwpeviedlsdkaillekGeiveeGepeevva 258
                  +lsGGekqrv +ar + k+  +ll dept +ld +t   +   +k+  +++  + ++ +h    i+d  d+ i+l++G++ve G+ ee+++
  MMETSP1061-20121228|19462_1 625 KLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDR--TTIIVAHRLSTIQDC-DEIIVLHNGQVVERGTHEELSK 712
                  69**********************************999999998876654..667778999999995.78999***********999753 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.2   0.0   1.3e-18   8.9e-17      12     186 ..     499     683 ..     495     695 .. 0.80

  Alignments for each domain:
  == domain 1    score: 59.2 bits;  conditional E-value: 1.3e-18
    TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpes..GevelndkelaeqrdelaeellylgHldglKaeLsalEnLkf......yaallqseqk.tveealekv..gLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                   r +l++lsf++  G++++ +G+ G GK+t+LR+l     p++  G+v++ +++l++ +    +++  +  +d++  + s+  n+++      ++++++++++ ++++++ +   g + +      +Ls G k+R+a+ar +l+ ap+ + DEPt +lD ++ + +++++++ + r+ ++++ +h 
  MMETSP1061-20121228|19462_1 499 DRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYgnlgssWEDVVKAAKQaKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQ-VGRDRTTIIVAHR 683
                  5789**********************************9986545*********9998866656666666777777777888888876666668888887776688888766533455555555568************************************999999987.4555555555555 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   1.7e-18   1.2e-16      18     230 ..     503     711 ..     499     714 .. 0.83

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 1.7e-18
    TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrp..deGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleli..gLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheGkvlaeGsldevq 230
                  ln+ls+++ +g+  + +G+ G Gk+t+l ++     p  d G+v + g+dl+ l+  +  r+ ++   q + +f+  ++  n++       s ++ +   ++++++++i++++     g ++ + ++  +Ls G+kq++ i+  +++++ +ll DeP++ + ++ ++ +   +k++ ++r+ ++v h ++ +++ +e + vlh+G+v+  G+ +e++
  MMETSP1061-20121228|19462_1 503 LNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPsnDIGNVSIGGHDLKDLNLDSF-RKSVAVIPQDTVLFH-ESIGYNIQYGN--LGSSWEDV---VKAAKQAKIHDTIMSFpdGYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQDCDE-IIVLHNGQVVERGTHEELS 711
                  89*****************************9887762256**********99987765.666777666655554.46777766543..23334433...566666777776665433677788899999***************************************************************9875.78***********999875 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.2   9.1e-19   6.5e-17     124     549 ..     272     703 ..     204     707 .. 0.76

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 9.1e-19
    TIGR01194 124 dtllilttllvelavtlfglaylaylsvvvflltvvlivlGvaayllarsrGl.kftykvrdeedelnkytt.alvsGlkel.klnrirrlsfarsaisesavrvadlniieilifilaktvGsl.llsllvGllltlaayfavidakaisasvlv...llyikGplvqlvsilpilararvaftrlaelserisepepelelseaenvllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqe..GellldGeavsdesrddyrdlfsavfadyylfddlvqpdekk...qasldqattylsrleledkvkvedlnysttt.....dlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrG..ktilvishddryfeladrlikladGkvvk 549
                  +++++l +++ ++a t f ++ ++ l +  f l+ + +vl +   +  ++ G+ +   k r  ++ l++     +v  l +   ++   +  +  ++ +es    ++  i  ++ + l  ++G+  +ls+ +  +++l+a      ++++   vlv   l+ +  pl+   s+   ++++ + ++      ++++  +    + ++   l  d++     + ++ v ++y+     +   l  + ++i +G+ v  vG  GcGkst+++ll  +y p +  G++ + G+ + d   d +r+  + +  d  lf++ ++ + +     +s ++  +  ++ +++d +     +y t       +ls G+++r+a+  a l++ p+ll de ++  d         +++  +k+ G  +t ++++h     +  d++i l +G+vv+
  MMETSP1061-20121228|19462_1 272 SISFVLNAMVFHVAPTTFEVGLVTGLVYYQFGLSHAGVVLATIGAYTGFTMGItQWRTKFRRDMNRLENQASgRVVDSLVNYeTVQFFNNINYEVGRYEESLKGYQKAAIQAQQSLSL-LNFGQAaILSVGMTGIMMLTAQQILDGTATVGDLVLVnglLFQLSVPLNFFGSVYREVSQSLLDME------HTFELIDTTTPIYNDPTRLRYDPETMTTDIAFNRVDFAYPGKM--DRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLDSFRKSVAVIPQDTVLFHESIGYNIQYgnlGSSWEDVVKAAKQAKIHDTIMSFPDGYDTVVgerglKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTES----DIMTHIKQVGrdRTTIIVAHRLSTIQDCDEIIVLHNGQVVE 703
                  4678888999999999999999999999999999999999887777766666514556666666666655441556565555146667788999999999999999988887777665.578886145665544555555555556677777777644233355666666666666666655554......44444444444555555788999999999******99998754..4457999**********************************76569***********************************976433111578899999999999***9999999999864333337*****************************99998765....666666765522699999*********************97 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.6   0.0   1.2e-18   8.3e-17      17     226 ..     503     708 ..     498     714 .. 0.81

  Alignments for each domain:
  == domain 1    score: 58.6 bits;  conditional E-value: 1.2e-18
    TIGR02633  17 ldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelkldasnvtr...pvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhvatkdae 226
                  l+n+++++  G+ v++ G  G+Gkst++++l   y   +  G++   g++lk  ++ d+ rk +++i q+ +l +e s+  ni  Gn  +    +++ ++  +  + ++   + ++  +t       +l +G++q v ia+a+ k + +l+ dep++sl  +  + ++  i+++ +   + + ++h+l  ++  +d+i v+ +Gq v     e
  MMETSP1061-20121228|19462_1 503 LNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNDIGNVSIGGHDLKDLNL-DSFRKSVAVIPQDTVLFHE-SIGYNIQYGNLGSSWEDVVKAAKQAKIHDTIM---SFPDGYDTVvgeRGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDR-TTIIVAHRLSTIQD-CDEIIVLHNGQVVERGTHE 708
                  89*********************************999999***********9998.78899*********99988.999******96555554444444443333343...3444444440003456778****************************9988877778888886654.67889******997.9**********99765555 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   6.2e-08   4.4e-06     334     383 ..     499     550 ..     483     582 .. 0.82
   2 !   32.1   0.0   1.4e-10   9.8e-09     161     229 ..     625     695 ..     593     734 .] 0.77

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 6.2e-08
    TIGR03719 334 dklliddlsfklpkggivGviGpnGaGkstlfklitgkekp..dsGelkiGe 383
                  d+ ++++lsf++p+g  v  +G+ G+Gkst+++l+    +p  d G+++iG 
  MMETSP1061-20121228|19462_1 499 DRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPsnDIGNVSIGG 550
                  7889*******************************97654422889999984 PP

  == domain 2    score: 32.1 bits;  conditional E-value: 1.4e-10
    TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkey..kGtvvavthdryfldnvaeWil 229
                  klsGGek+rva++r +l++  +ll dePt  ld+++ + +  ++k+   + t ++v+h    +++  e i+
  MMETSP1061-20121228|19462_1 625 KLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVgrDRTTIIVAHRLSTIQDCDEIIV 695
                  79**********************************99999999986335689999998777777666554 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   1.9e-17   1.4e-15      16     220 ..     499     708 ..     482     714 .. 0.78

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 1.9e-17
    TIGR01288  16 dkvvvndlsftiaagecfgllgpngagkstiarlvlglisp..degkitvlgepvpa.rarlarakigvvpqfdnldreftvrenl..lvfgryfg..lstreieevipsllefar.leskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpd 220
                  d+ ++n+lsf i +g+   ++g  g+gksti rl+  +  p  d g++++ g++    +    r  + v+pq   l +e     n+     g  ++  +++ +  ++  +++ f    ++    r  +lsgg k+r+++ara+++d  +l+ dept+ ld ++   i   ++ +  r +t ++ +h +   +  cd + vl +g+ +  g  +
  MMETSP1061-20121228|19462_1 499 DRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPsnDIGNVSIGGHDLKDlNLDSFRKSVAVIPQDTVLFHESIG-YNIqyGNLGSSWEdvVKAAKQAKIHDTIMSFPDgYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQV-GRDRTTIIVAHRLSTIQ-DCDEIIVLHNGQVVERGTHE 708
                  45599********************************99883356999999887654267889*********8888777433.33200223333331145555556667788886426778888999********************************************985.77888888888887665.6**********988877655 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       5.4   3.8e+02     164     196 ..     403     436 ..     391     442 .. 0.76
   2 !   50.2   0.0   7.9e-16   5.6e-14       3     201 ..     510     712 ..     508     728 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 5.4
    TIGR03771 164 tailm.tthdlaeavatcdrvvllngrvvadgap 196
                  t i+m t+ ++ +  at+  +vl+ng +   ++p
  MMETSP1061-20121228|19462_1 403 TGIMMlTAQQILDGTATVGDLVLVNGLLFQLSVP 436
                  5566615567899999*********988877777 PP

  == domain 2    score: 50.2 bits;  conditional E-value: 7.9e-16
    TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvak..Gsvkvagkssrk.....grreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalerv...klteladrpvGe....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvvadgapdqlqd 201
                  + +G+ ++++G  G Gk+t+lr +  +  +++  G+v ++g+  ++      r+ +  +pq   +   f  +       G   + G l  + ++  +a ++a  +    ++ +  d  vGe    lsGG++qrv +ara+  +  +ll dep + ld  ++  ++  ++++  + t+i+ ++h l+   ++ + +vl ng+vv  g+ ++l +
  MMETSP1061-20121228|19462_1 510 IPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDlnldsFRKSVAVIPQDTVL---FHES------IGYNIQYGNLGSSWEDVVKAAKQAKIHDtimSFPDGYDTVVGErglkLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTII-VAHRLSTIQDCDEIIVLHNGQVVERGTHEELSK 712
                  668999******************99998765449999999754321111134556666665332...2222......233333444444444444444443322200022333455555444449**********************************9999999999988877765.78***9877777778999*********999976 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.7e-08   1.9e-06      12      73 ..     499     560 ..     496     573 .. 0.93
   2 !   27.8   0.1   4.7e-09   3.4e-07     145     230 ..     626     708 ..     593     716 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2.7e-08
    TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdllelevee 73 
                  d++iL++l+ ++ +G+++a +G+ G Gkst+ + l    + +   G++++ g+dl +l+ + 
  MMETSP1061-20121228|19462_1 499 DRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNDIGNVSIGGHDLKDLNLDS 560
                  799**********************************99999999************99875 PP

  == domain 2    score: 27.8 bits;  conditional E-value: 4.7e-09
    TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdve 230
                   sGGek+r  i +  l +  + + De  s lD  +   ++++++++ + +++++i++h   l      d + vl++G++v+ G  e
  MMETSP1061-20121228|19462_1 626 LSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGR-DRTTIIVAHR--LSTIQDCDEIIVLHNGQVVERGTHE 708
                  69***********9999999***********************99865.5677899995..5556678***************876 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   8.6e-17   6.1e-15      41     252 ..     504     710 ..     502     718 .. 0.78

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 8.6e-17
    TIGR03415  41 adasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafG...lelsGvakaerrkrveeqlelvglaeWadkkvge....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeei 252
                  ++ s+++ +G  + ++G sG Gks++lr + ++   s    +v+ + + +     +  +l ++r k v+++ q   +l   ++  n+ +G      + v ka ++ ++++   ++++ +  d+ vge    lsGG +qrv +ara+  +a+ill deP s+ld    + +   + ++     +t + v+h l   ++  ++i ++++G++v  gt ee+
  MMETSP1061-20121228|19462_1 504 NNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNDIGNVSIGGHDL-----KDLNLDSFR-KSVAVIPQDT-VLFHESIGYNIQYGnlgSSWEDVVKAAKQAKIHDT--IMSFPDGYDTVVGErglkLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVG--RDRTTIIVAHRLS-TIQDCDEIIVLHNGQVVERGTHEEL 710
                  78899***************************988877555555444433.....333445555.4688877775.566899*****877211456667777777777765..456666666666655555********************************988887777766554..4799999*****7.5788899**************9986 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.0   2.4e-16   1.7e-14      13     206 ..     500     705 ..     496     720 .. 0.77

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 2.4e-16
    TIGR03740  13 qavvnnvslkvkknsvygllGpnGaGkstllklltGllrkts..Geilldgrewtrkdl...kkiGsliesPalyenltarenlkv.......rtlllglpesriee.vlkivd.lentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkyek 206
                  + ++nn+s+++++ +  +++G  G+Gkst+l+ll  +  +++  G++ + g+++   +l   +k  ++i + ++  + +   n++        + ++++ ++++i++ +++  d  ++    +  ++s G kqr+ ia a+l++  +l+ dePt  ld     ++   ik + ++ +t+i+ +h ls ++  +d+i ++++G++  ++
  MMETSP1061-20121228|19462_1 500 RPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdiGNVSIGGHDLKDLNLdsfRKSVAVIPQDTVLFHESIGYNIQYgnlgsswEDVVKAAKQAKIHDtIMSFPDgYDTVVGERGLKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIV-AHRLSTIQD-CDEIIVLHNGQVVERG 705
                  6799*********************************9875433********99877762223445666665555555555555541111111345566677788651445555145556788899*********************************************9999888776.79*****98.699999****987655 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.5   0.0   6.4e-15   4.6e-13     755     984 ..     481     703 ..     374     712 .. 0.78

  Alignments for each domain:
  == domain 1    score: 45.5 bits;  conditional E-value: 6.4e-15
    TIGR00956 755 sgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkld....ssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvY 984
                  ++++i + r + +  + k  +r +L++++ ++  Gk  A +G sG Gk t+l  L    +      g++ ++g++l+    +sF++s+  + q+ +  ++  +   +++       ++v k+ k+  + +   ++ + +  d vvG+ G  L+   ++r++i+  +  k + +l  DePts LDsqt   i+  ++++     +i+   H  s   +++ D++++l+ G ++v 
  MMETSP1061-20121228|19462_1 481 MTTDIAFNR-VDFAYPGK-MDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSND-IGNVSIGGHDLKdlnlDSFRKSVAVIPQDTVLFHE-SIGYNIQYGNLGSSWEDVVKAAKQAKIHDT--IMSFPDGYDTVVGERGLKLSGGEKQRVAIARAIL-KDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTII-VAHRLST--IQDCDEIIVLHNG-QVVE 703
                  445666655.55555544.4699*****************************999765554433.35666666665423335999999988887776655.578899**999999999***9999888775..46788999*********************97755.44469999*******************99987766666.5688876..5999999999987.7775 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   1.7e-13   1.2e-11     451     642 ..     483     686 ..     472     695 .. 0.81

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 1.7e-13
    TIGR00954 451 ngikfeniplvtP..egdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg............glltkpe.egklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLed.llereggwdavqdWkd.vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgi..tllsvshrksL 642
                    i f+ ++ + P   +  ++++Lsf++++G+ +  +G  GcGKs + R+l  ++   +              l  ++ ++ +  +Pq   +      + i Y     ++ + g s +d+++  ++ k++d ++    g+d+v   +   LsgGekqR+a+AR +       + DE ts +  + E  +  ++k+vg   t + v+hr s 
  MMETSP1061-20121228|19462_1 483 TDIAFNRVDFAYPgkMDRPILNNLSFHIPQGKTVAFVGSSGCGKSTILRLLYRFYDPSNdignvsigghdlKDLNLDSfRKSVAVIPQDTVLF----HESIGYNI---QYGNLGSSWEDVVKAAKQAKIHDtIMSFPDGYDTVVGERGlKLSGGEKQRVAIARAILKDAPILLCDEPTSSLDSQTESDIMTHIKQVGRdrTTIIVAHRLST 686
                  569999*******77678899********************************9977777988999966664444444256677888876664....45555543...3345588889999999999997637788999**987665527****************999999***********************9852267778888775 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0    0.0012     0.085      20      49 ..     505     535 ..     494     562 .. 0.83
   2 !   26.1   0.0   1.7e-08   1.2e-06     141     234 ..     625     721 ..     617     725 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0012
    TIGR02323  20 rvsf.lypGevlgivGesGsGkstllkalaa 49 
                  ++sf +  G+ ++ vG sG Gkst+l  l  
  MMETSP1061-20121228|19462_1 505 NLSFhIPQGKTVAFVGSSGCGKSTILRLLYR 535
                  478966779*****************98865 PP

  == domain 2    score: 26.1 bits;  conditional E-value: 1.7e-08
    TIGR02323 141 afsGGmqqrlqiarnlvtr.prlvfmeptGGlvsvqarllllrglvrelglaviivth.lavarllaqrllvmkqGrvvesGltrvlpk..hpytqll 234
                  ++sGG +qr+ iar+++   p l+  ept  l s     +++    +  + ++iiv+h l+ ++  ++ ++v+++G+vve G  + l k    yt+ll
  MMETSP1061-20121228|19462_1 625 KLSGGEKQRVAIARAILKDaPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHrLSTIQD-CDEIIVLHNGQVVERGTHEELSKfaGRYTELL 721
                  68************988761555556******665544444443333457789999997887775.679*************9988855114688877 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0044      0.31     623     650 ..     503     530 ..     497     540 .. 0.69
   2 !   23.6   0.1     4e-08   2.8e-06     822     922 ..     619     709 ..     597     711 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0044
    TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLi 650
                  l++++ +ip g+ ++  G sg Gkst++
  MMETSP1061-20121228|19462_1 503 LNNLSFHIPQGKTVAFVGSSGCGKSTIL 530
                  5566666777777777777777777654 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 4e-08
    TIGR00630 822 lGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiidlGPeGGekGGkvvasgtPee 922
                  +G+    LsGGe qrv +a+ + k +    + + DePt  L  +    +++ ++++     t +++ h l  i+ +D ii l      + G+vv +gt ee
  MMETSP1061-20121228|19462_1 619 VGERGLKLSGGEKQRVAIARAILKDA---PILLCDEPTSSLDSQTESDIMTHIKQVGR-DRTTIIVAHRLSTIQDCDEIIVL------HNGQVVERGTHEE 709
                  6888899*************999865...68999********9999999999998655.56778889************988......4567777777666 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.1       1.5     1e+02      23      39 ..     513     529 ..     505     530 .. 0.76
   2 !   11.1   0.0   0.00018     0.013    1092    1163 ..     626     693 ..     624     694 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.5
    TIGR02168  23 kgitgiVGPNGcGKSNi 39 
                  ++ ++ VG  GcGKS i
  MMETSP1061-20121228|19462_1 513 GKTVAFVGSSGCGKSTI 529
                  456899*********77 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00018
    TIGR02168 1092 LSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakllkefskktQFIviTHnkgTMeeadqL 1163
                   LSGGEK  +A+a   Ai+  k aP+ + DE  + LD +     ++ +k++ ++   I++ H+  T++ +d +
  MMETSP1061-20121228|19462_1  626 LSGGEKQRVAIA--RAIL--KDAPILLCDEPTSSLDSQTESDIMTHIKQVGRDRTTIIVAHRLSTIQDCDEI 693 
                   9**********9..5887..67999999******************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      191  (0.0465627); expected 82.0 (0.02)
Passed Vit filter:                        83  (0.020234); expected 4.1 (0.001)
Passed Fwd filter:                        58  (0.0141394); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              58  [number of targets reported over threshold]
# CPU time: 1.23u 0.17s 00:00:01.40 Elapsed: 00:00:00.85
# Mc/sec: 1139.76
//
Query:       MMETSP1061-20121228|19475_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1984.91
//
Query:       MMETSP1061-20121228|19483_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0045   14.7   0.1      0.011   13.4   0.0    1.5  1  TIGR03656 IsdC: heme uptake protein IsdC
     0.0048   15.4   0.8      0.011   14.3   0.6    1.7  1  TIGR01167 LPXTG_anchor: LPXTG-motif cell wall anchor domain
  ------ inclusion threshold ------
      0.019   13.3   0.1      0.044   12.1   0.1    1.7  1  TIGR03901 Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain
        4.6    5.9   9.9      0.072   11.7   1.1    2.5  2  TIGR03382 GC_trans_RRR: Myxococcales GC_trans_RRR domain


Domain annotation for each model (and alignments):
>> TIGR03656  IsdC: heme uptake protein IsdC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     1e-05     0.011       1      53 [.       5      57 ..       5      60 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1e-05
    TIGR03656  1 mkkvlvliafvvllafillsaglasaaaladGtydinYtvlkadndsasmanD 53
                 m  +l+ i f +lla+ l+++++as  a + Gt + n  +    + sas anD
  MMETSP1061-20121228|19483_1  5 MTMMLSNILFHCLLALYLIQTATASCPAFKLGTTTCNSGIFSRSKISASCAND 57
                 556788899*******************************************9 PP

>> TIGR01167  LPXTG_anchor: LPXTG-motif cell wall anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.6   1.1e-05     0.011       5      34 .]     158     189 ..     156     189 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-05
    TIGR01167   5 TGessnslllllGl..lllgl.aglllrkrkkk 34 
                  T  +s+s++++ G+  l++++ +gl++ +r+k+
  MMETSP1061-20121228|19483_1 158 TN-ASSSAFMATGMasLFAVGgLGLYFMRRRKR 189
                  66.677788888888*66666699999999985 PP

>> TIGR03901  Delta_Ctrm_sort: deltaproteobacterial GC-motif protein sorting domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.1   4.3e-05     0.044      15      33 .]     172     190 ..     157     190 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.3e-05
    TIGR03901  15 galgLlgLgllalrRRRRr 33 
                   +++  gLgl + rRR R+
  MMETSP1061-20121228|19483_1 172 SLFAVGGLGLYFMRRRKRP 190
                  79**************995 PP

>> TIGR03382  GC_trans_RRR: Myxococcales GC_trans_RRR domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   1.0         4   4.1e+03       2       7 ..     112     116 ..     112     117 .. 0.80
   2 ?   11.7   1.1     7e-05     0.072       4      25 ..     167     187 ..     159     189 .. 0.84

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 4
    TIGR03382   2 CsAagG 7  
                  C++a G
  MMETSP1061-20121228|19483_1 112 CGSA-G 116
                  9999.5 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 7e-05
    TIGR03382   4 AagGaggllalalLalaaLlRR 25 
                  A+ G ++l+a+++L+l  ++RR
  MMETSP1061-20121228|19483_1 167 AT-GMASLFAVGGLGLYFMRRR 187
                  45.9999999**9999999999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 1219.58
//
Query:       MMETSP1061-20121228|19480_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-190  632.1   5.8   1.2e-190  632.0   4.0    1.0  1  TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
    1.8e-57  193.1   2.3    2.4e-57  192.7   1.6    1.0  1  TIGR01303 IMP_DH_rel_1: IMP dehydrogenase family protein
    9.5e-36  121.3   4.0    7.3e-33  111.8   1.5    2.1  2  TIGR01305 GMP_reduct_1: guanosine monophosphate reductase
    5.6e-33  112.6   1.2    2.9e-30  103.7   0.4    2.2  2  TIGR01306 GMP_reduct_2: guanosine monophosphate reductase
    5.7e-24   82.9   8.0    2.6e-17   61.0   2.7    2.7  3  TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein
    5.8e-08   30.2   1.4     0.0023   15.1   0.0    2.4  2  TIGR03151 enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
    0.00024   18.6   0.0    0.00053   17.5   0.0    1.6  1  TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family
    0.00036   17.6   0.1      0.051   10.5   0.1    2.0  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    0.00049   17.6   3.8     0.0099   13.3   0.2    3.1  3  TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
    0.00092   16.0   0.7     0.0019   15.0   0.2    1.7  2  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
     0.0041   14.3   0.7      0.038   11.2   0.0    2.3  2  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ
  ------ inclusion threshold ------
      0.012   12.2   0.9      0.022   11.3   0.5    1.4  1  TIGR03966 actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system


Domain annotation for each model (and alignments):
>> TIGR01302  IMP_dehydrog: inosine-5'-monophosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  632.0   4.0  3.6e-193  1.2e-190       1     449 [.      34     484 ..      34     485 .. 0.99

  Alignments for each domain:
  == domain 1    score: 632.0 bits;  conditional E-value: 3.6e-193
    TIGR01302   1 gltfddvlllPakidvepkdvdlstrltkniklkiPvlssamDtvtesklaialAreGgiGviHknmsiekqveevkkvKraeegvisdpvtvsPettvedvlelkekkgisgvpvvedgkeegklvGivtkkdlrfvkdkskkvsevmt.keevitvkeeidleeaeevleekkieklpvvdkegelvglvtvkdiekakefpkaskd.eegrlivgaavgtreedkeRveelveagvdvlviDssqgnsikvlesikkikktypdldviaGnvataeaakalidagadglkvGiGsGsiCttrevaavGvpqitAvakvaeaaaksgipviADGGirysGdivKalalGadavmlGsllagteEspgevvlkngrrlKaYRGmGsleAmekgskdRYlkeekedekkvaeGvegavvdkGsvaellaqlvkglksglgdvGaksleelk 449
                  g+t+dd++++P++i +   dvd+s+ ltkni+l++P++ss+mDtvte+++ai++A++GgiG+iH nm+ e q++evk+vKr+++g+i dpv +sPe+t+ed+lelk+k ++s+ pv+++g++ gkl+Gi++ +d +f+ + + kvse+mt + e+++++ +i+leea+++l+++k++klpvv++++elvglv++ diek+ke+p+askd  +++l++ga++gtr +dk R+  l+eagv+v+v+Dssqg+s++++e+i+++k+t+p++dvi+Gnv+t ++a++li+ag+dgl+vG+G GsiCtt+ev+avG++q++Av++v+++a+k+g+p+iADGGi+ +G+i+Kal+lGa +vm+Gs+lagt+E+pge+++++g+rlK YRGmGsleAm++gs++RY+ +  ++++kva+Gv+gav+dkG++ + +++l++g+++gl+d G+ks++ ++
  MMETSP1061-20121228|19480_1  34 GMTYDDLIVMPGHIGFGVGDVDISSDLTKNIRLQVPLVSSPMDTVTEHQMAITMALQGGIGIIHSNMKAEDQAAEVKRVKRFKNGFILDPVCLSPENTLEDILELKTKLKFSSFPVTDTGNMGGKLLGIISGRDTAFIDNLAVKVSEFMTpRPELTCAQDGISLEEANDILKKSKKGKLPVVNENDELVGLVARADIEKNKENPRASKDkVNKQLLCGASIGTRPDDKIRAGLLAEAGVNVIVVDSSQGDSMYQIEMIQYLKATFPQVDVIGGNVVTPSQAHNLIKAGVDGLRVGMGIGSICTTQEVCAVGRAQASAVYHVSKYARKYGVPTIADGGIKSTGHITKALSLGAGCVMMGSMLAGTDEAPGEYFYQDGVRLKRYRGMGSLEAMKSGSEKRYVWDTASTHVKVAQGVSGAVTDKGTLRRYIPYLMQGIRHGLQDAGIKSVDIAR 484
                  68***************************************************************************************************************************************************************************************************************679*****************************************************************************************************************************************************************************************************************************************998666 PP

>> TIGR01303  IMP_DH_rel_1: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.7   1.6     7e-60   2.4e-57      10     457 ..      33     487 ..      26     504 .. 0.89

  Alignments for each domain:
  == domain 1    score: 192.7 bits;  conditional E-value: 7e-60
    TIGR01303  10 ydltyddvflvpsrsevgsrldvdlstadgt..gttiplvvanmtavagrrmaetvarrgglvilpqdvpievvketvafvksrd..lvldtpitlapddtvadalalihkrahgaavvveed....kpvgvvtdkdlegvdrft.qveevmst..dlvtlpadlepreafdlleeasrklapvvdadgslagiltrtgalratlytpav.d.aagrlrigaavgingdvegkakalldagvdvlvidtahghqekmisavkavraldlrvpivagnvvsaegvrdlveaganiikvgvgpgamcttrmmtgvgrpqfsavlecaaearklgahvwadggvrdprdvalalaagasnvmvgswfagtyespgdlrrdadgraykesfgmaskraveartskeeafdrarkal.feegistsrlfldkarggvedlidaiisgvrssctyagadsleeltera 457
                    +tydd++++p     g   dvd+s++        +plv + m +v+  +ma t+a +gg+ i+  ++ +e  +  v  vk+ +  ++l  p+ l+p++t+ d l+l  k   ++  v + +    k +g+++ +d   +d+++ +v e m+   +l  ++++++ +ea d+l+++++   pvv+++ +l g+++r    +      a  d  + +l  ga++g   d + +a  l++agv+v+v+d++ g     i+ ++ ++a  ++v ++ gnvv+     +l++ag + ++vg+g g++ctt+ +  vgr q sav   +  ark+g    adgg++    ++ al+ ga  vm+gs +agt e+pg+  + +dg   k   gm s  a+++ ++k   +d a   +   +g+s +      ++g +   i  ++ g+r  +  ag +s++   er 
  MMETSP1061-20121228|19480_1  33 IGMTYDDLIVMPGHIGFGV-GDVDISSDLTKniRLQVPLVSSPMDTVTEHQMAITMALQGGIGIIHSNMKAEDQAAEVKRVKRFKngFIL-DPVCLSPENTLEDILELKTKLKFSSFPVTDTGnmggKLLGIISGRDTAFIDNLAvKVSEFMTPrpELTCAQDGISLEEANDILKKSKKGKLPVVNENDELVGLVARADIEKNKENPRASkDkVNKQLLCGASIGTRPDDKIRAGLLAEAGVNVIVVDSSQGDSMYQIEMIQYLKATFPQVDVIGGNVVTPSQAHNLIKAGVDGLRVGMGIGSICTTQEVCAVGRAQASAVYHVSKYARKYGVPTIADGGIKSTGHITKALSLGAGCVMMGSMLAGTDEAPGEYFY-QDGVRLKRYRGMGSLEAMKSGSEKRYVWDTASTHVkVAQGVSGAV----TDKGTLRRYIPYLMQGIRHGLQDAGIKSVDIARERL 487
                  579*********9988875.58998886544115689***********************************999999999975411455.5*******************999888777653233499**************8549***99853378889999*********************************9877766554443232578899**********************************************************************************************************************************************************865.689999************************986542789999874....578999999999999999999999999999888875 PP

>> TIGR01305  GMP_reduct_1: guanosine monophosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00035      0.12      45     128 ..      67     148 ..      53     155 .. 0.81
   2 !  111.8   1.5   2.1e-35   7.3e-33      89     312 ..     239     469 ..     213     486 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00035
    TIGR01305  45 gvpiiaanmdtvgtfemaaalasfdiltaihkhysvdewkafaasasadvlknvavssgssdndleklksileevpqlkficld 128
                   vp++++ mdtv   +ma ++a    +  ih     ++  a ++  + + +kn  +   ++ +  + l++ile++ +lkf  + 
  MMETSP1061-20121228|19480_1  67 QVPLVSSPMDTVTEHQMAITMALQGGIGIIHSNMKAEDQAAEVK--RVKRFKNGFILDPVCLSPENTLEDILELKTKLKFSSFP 148
                  69******************************999999877665..66778887777777777777778888888888876655 PP

  == domain 2    score: 111.8 bits;  conditional E-value: 2.1e-35
    TIGR01305  89 sasadvlknvavssgssdndleklksileevpqlkficldvangysehfvefvkkvreaypkktimagnvvtgemveelilsgadivkvgigpgsvcttrkktgvgypqlsaviecadaahglkghivsdggcttpgdvakafgagadfvmlggllagheesggevveengkklklfygmssdtamk.....kha..ggvaeyrasegktvkvpyrgdventvrdilgglr 312
                  +++ +v k+++  + ++    +k+++ l +   ++ i++d ++g s   +e+++  ++++p+  ++ gnvvt     +li +g d ++vg+g gs+ctt+  + vg  q sav  ++  a   +   ++dgg  + g ++ka++ ga  vm+g +lag +e+ ge + ++g +lk + gm s  amk     +++   + +  + ++g +  v  +g +   +  ++ g+r
  MMETSP1061-20121228|19480_1 239 ASKDKVNKQLLCGASIGTRPDDKIRAGLLAEAGVNVIVVDSSQGDSMYQIEMIQYLKATFPQVDVIGGNVVTPSQAHNLIKAGVDGLRVGMGIGSICTTQEVCAVGRAQASAVYHVSKYARKYGVPTIADGGIKSTGHITKALSLGAGCVMMGSMLAGTDEAPGEYFYQDGVRLKRYRGMGSLEAMKsgsekRYVwdTASTHVKVAQGVSGAVTDKGTLRRYIPYLMQGIR 469
                  45556667777788888888899999999999**********************************************************************************************************************************************************822111222112223344555555555555555555555555555 PP

>> TIGR01306  GMP_reduct_2: guanosine monophosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0    0.0016      0.55      19      77 ..      51     111 ..      35     139 .. 0.72
   2 !  103.7   0.4   8.5e-33   2.9e-30      76     264 ..     241     430 ..     214     488 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0016
    TIGR01306  19 rseadtsvrlgkk.kfklpvvpanmqtiideklakslaengyfyimhr.fdeearidfikd 77 
                    ++d s  l k+ ++++p+v + m+t+ + ++a+++a +g + i+h  ++ e +   +k+
  MMETSP1061-20121228|19480_1  51 VGDVDISSDLTKNiRLQVPLVSSPMDTVTEHQMAITMALQGGIGIIHSnMKAEDQAAEVKR 111
                  45677787777643899************************99999952333433333333 PP

  == domain 2    score: 103.7 bits;  conditional E-value: 8.5e-33
    TIGR01306  76 kdmkergllasisvgvkkaeyefveklaeeklipeyitidiahghsnsviemikhiktelpdsfviagnvgtpeavrelenagadatkvgigpgkvcitkiktgfgtggwqlaalrlcakaark...piiadggirthgdiaksirfgasmvmigslfagheespgktveldgklykeyfgsas..efqkgekk 264
                  kd  ++ ll+  s+g +  +      lae     + i +d ++g s   iemi+++k  +p+  vi gnv tp    +l +ag d  +vg+g g +c t+       g  q +a+  ++k ark   p iadggi++ g i+k++ +ga  vm+gs++ag +e+pg+   +dg + k y g  s   ++ g +k
  MMETSP1061-20121228|19480_1 241 KDKVNKQLLCGASIGTRPDDKIRAGLLAEAG--VNVIVVDSSQGDSMYQIEMIQYLKATFPQVDVIGGNVVTPSQAHNLIKAGVDGLRVGMGIGSICTTQEVCA--VGRAQASAVYHVSKYARKygvPTIADGGIKSTGHITKALSLGAGCVMMGSMLAGTDEAPGEYFYQDGVRLKRYRGMGSleAMKSGSEK 430
                  5556677777777777766554444455544..67899************************************************************987665..567899***********98889***************************************************875542145555444 PP

>> TIGR01304  IMP_DH_rel_2: IMP dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     4e-08   1.4e-05      15      75 ..      37      98 ..      33     117 .. 0.85
   2 !   61.0   2.7   7.5e-20   2.6e-17     176     298 ..     289     406 ..     260     415 .. 0.81
   3 ?   -2.0   0.0         1   3.5e+02     293     324 ..     428     459 ..     414     462 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4e-08
    TIGR01304 15 ldeiavvpsrrtrdskdvdtawki.dayrfelPvlaspmdalvspelaielgelGglGvlnl 75
                  d++ v+p+       dvd++  +   +r ++P+++spmd++ + ++ai ++ +Gg+G++ +
  MMETSP1061-20121228|19480_1 37 YDDLIVMPGHIGFGVGDVDISSDLtKNIRLQVPLVSSPMDTVTEHQMAITMALQGGIGIIHS 98
                 5788888999899999999999873579*******************************976 PP

  == domain 2    score: 61.0 bits;  conditional E-value: 7.5e-20
    TIGR01304 176 nlkklisel..dvPvvvGgvvdyetalhlmrtGaagvlvGggtgaatttrevlGievpmataiadvaaarrdyldetGgryvhviadGgietsGdlakaiacGadavvlGsPlaraaeaaGrGff 298
                  ++ ++++    +v v+ G+vv+   a +l+++G  g+ vG+g g+ +tt+ev  ++ ++a+a+  v+   r y    G   v+ iadGgi+ +G+++ka++ Ga +v++Gs la ++ea+G+ f+
  MMETSP1061-20121228|19480_1 289 EMIQYLKATfpQVDVIGGNVVTPSQAHNLIKAGVDGLRVGMGIGSICTTQEVCAVGRAQASAVYHVSKYARKY----G---VPTIADGGIKSTGHITKALSLGAGCVMMGSMLAGTDEAPGEYFY 406
                  333333222225889*************************************************998655555....8...****************************************9887 PP

  == domain 3    score: -2.0 bits;  conditional E-value: 1
    TIGR01304 293 aGrGffwgaaaaspelPrGakvevgtvgtlee 324
                  + + + w  a+++ ++ +G+   v++ gtl++
  MMETSP1061-20121228|19480_1 428 SEKRYVWDTASTHVKVAQGVSGAVTDKGTLRR 459
                  457799*************9999999999987 PP

>> TIGR03151  enACPred_II: putative enoyl-[acyl-carrier-protein] reductase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.7e-06    0.0023       3      81 ..      59     137 ..      57     166 .. 0.80
   2 !   13.5   0.6     2e-05    0.0069     119     199 ..     311     400 ..     264     469 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.7e-06
    TIGR03151   3 kltelleieyPilqGgmawvataelaaavseaGGlGiigaGnapkdvvkkeikkvkeltdkPfGvnilllsp..fvdelvd 81 
                   lt+ + ++ P++   m  v++ ++a +++  GG+Gii + n++++   +e+k+vk+  +  f ++ + lsp    +++++
  MMETSP1061-20121228|19480_1  59 DLTKNIRLQVPLVSSPMDTVTEHQMAITMALQGGIGIIHS-NMKAEDQAAEVKRVKRFKN-GFILDPVCLSPenTLEDILE 137
                  5788899*******************************87.78888999******99765.56666666666223455555 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 2e-05
    TIGR03151 119 valakrleklGadavia.eGmeaGG......hiG..elttlalvpqvvdavsiPviaaGGiadgrGlaaalalGaeavqlGtrflvakes 199
                   + a+ l k+G+d + +  G+ +         +G  + +++  v++ ++   +P ia GGi+    +  al lGa +v +G+ +  ++e+
  MMETSP1061-20121228|19480_1 311 PSQAHNLIKAGVDGLRVgMGIGSICttqevcAVGraQASAVYHVSKYARKYGVPTIADGGIKSTGHITKALSLGAGCVMMGSMLAGTDEA 400
                  4556667777777653312222222001011223112345556777888899*****************************977666665 PP

>> TIGR00393  kpsF: sugar isomerase, KpsF/GutQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.5e-06   0.00053     215     267 ..     171     225 ..     127     226 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.5e-06
    TIGR00393 215 ggalkkevkdvmtlggk..tlksdallveakellkkrkitslvvvddenkllGvl 267
                   + l  +v ++mt+ ++    + ++ l ea+++lkk k   l+vv+++++l+G++
  MMETSP1061-20121228|19480_1 171 IDNLAVKVSEFMTPRPEltCAQDGISLEEANDILKKSKKGKLPVVNENDELVGLV 225
                  4678899*******997213456678899************************97 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0094       3.2      52      99 ..      96     143 ..      88     148 .. 0.87
   2 !   10.5   0.1   0.00015     0.051     250     342 ..     185     281 ..     162     288 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0094
    TIGR01186  52 idGediaeisdaelrevrrkkiamviqkialfPhmtildnislglell 99 
                  i  ++ ae + ae++ v+r k ++++  ++l P  t+ d ++l  +l+
  MMETSP1061-20121228|19480_1  96 IHSNMKAEDQAAEVKRVKRFKNGFILDPVCLSPENTLEDILELKTKLK 143
                  566677788899***************************999998885 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00015
    TIGR01186 250 tvlitkt.adkglrsalkllkdedveslyvvdrekklvGvvdvesikkarkkaqlledvlkedilt.vdeqtllsellsk..vlkagikvpvvdedq 342
                  +  +t +  + +l +a  +lk+ +   l vv+++  lvG v   +i+k++++ ++ +d +++++l   + +t   + ++   +++ag++v vvd  q
  MMETSP1061-20121228|19480_1 185 RPELTCAqDGISLEEANDILKKSKKGKLPVVNENDELVGLVARADIEKNKENPRASKDKVNKQLLCgASIGTRPDDKIRAglLAEAGVNVIVVDSSQ 281
                  4444443145788999999***********************9999999999988888887777651566888888887543778899999999765 PP

>> TIGR00343  TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.039        13     180     203 ..     195     217 ..     168     231 .. 0.70
   2 !   13.3   0.2   2.9e-05    0.0099     192     250 ..     292     353 ..     268     359 .. 0.70
   3 ?    1.0   0.1      0.16        54     105     230 ..     351     393 ..     335     404 .. 0.60

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.039
    TIGR00343 180 kelevlvellkevkkeGklpvvnf 203
                   +le   ++lk+  k+Gklpvvn 
  MMETSP1061-20121228|19480_1 195 ISLEEANDILKK-SKKGKLPVVNE 217
                  467777888877.578******96 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 2.9e-05
    TIGR00343 192 vkkeGklpvvnfaaGGvatpadaallmqlGadGvfvGsGifk...senpeklakaiveatth 250
                     +  +p v+   G v tp++a  l++ G dG+ vG Gi     +++   + +a   a++h
  MMETSP1061-20121228|19480_1 292 QYLKATFPQVDVIGGNVVTPSQAHNLIKAGVDGLRVGMGIGSictTQEVCAVGRAQASAVYH 353
                  3345679*******************************985311144444444555555555 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.16
    TIGR00343 105 tfhiekkkfkvpfvcGardlGealrriaeGaamirtkGeaGtGdvveavkhlrlikeeikklqkkleeeelaaeakelevlvellkevkkeGklpvvnfaaGGvatpadaallmqlGadGvfvGsG 230
                   +h++k                                                                                + +   k  v   a GG+ +    +  + lGa  v++Gs 
  MMETSP1061-20121228|19480_1 351 VYHVSK--------------------------------------------------------------------------------YAR---KYGVPTIADGGIKSTGHITKALSLGAGCVMMGSM 393
                  333333................................................................................222...2334456667777777777777777777777765 PP

>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   0.0       2.3   7.7e+02     200     226 ..     266     292 ..     262     302 .. 0.80
   2 !   15.0   0.2   5.6e-06    0.0019     240     289 ..     341     392 ..     306     403 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 2.3
    TIGR02151 200 eladagvkaidvaGaGGTsfakvEnar 226
                   la+agv++i v  + G s  ++E+ +
  MMETSP1061-20121228|19480_1 266 LLAEAGVNVIVVDSSQGDSMYQIEMIQ 292
                  688999999999999999999999866 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 5.6e-06
    TIGR02151 240 sdwGiptaasllevrs..aakkleliasGGlrsgldvakalaLGAdlvglar 289
                  +  G   a+++++v++   +  ++ ia GG++s   + kal+LGA +v +  
  MMETSP1061-20121228|19480_1 341 CAVGRAQASAVYHVSKyaRKYGVPTIADGGIKSTGHITKALSLGAGCVMMGS 392
                  5667777888888888545567899**********************98865 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1      0.16        53      58     100 ..     283     325 ..     271     333 .. 0.69
   2 !   11.2   0.0   0.00011     0.038      61     105 ..     349     393 ..     336     399 .. 0.76

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.16
    TIGR03572  58 erekllelieklaeevfvPltvgGGiksledvkkllkaGadKv 100
                  ++  ++e+i+ l         +gG + +  ++++l+kaG+d +
  MMETSP1061-20121228|19480_1 283 DSMYQIEMIQYLKATFPQVDVIGGNVVTPSQAHNLIKAGVDGL 325
                  44556666666654444444679999*************9965 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 0.00011
    TIGR03572  61 kllelieklaeevfvPltvgGGiksledvkkllkaGadKvsinta 105
                  + +  ++k a++  vP  + GGiks  ++ k l+ Ga  v++ + 
  MMETSP1061-20121228|19480_1 349 SAVYHVSKYARKYGVPTIADGGIKSTGHITKALSLGAGCVMMGSM 393
                  555667888888888888888888888888888888888887664 PP

>> TIGR03966  actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   6.6e-05     0.022     303     333 ..     363     393 ..     289     415 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 6.6e-05
    TIGR03966 303 vevlldGGirrGsdvvkalalGaravliGra 333
                  v  + dGGi+    + kal+lGa  v++G  
  MMETSP1061-20121228|19480_1 363 VPTIADGGIKSTGHITKALSLGAGCVMMGSM 393
                  56789***********************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.38
# Mc/sec: 1799.22
//
Query:       MMETSP1061-20121228|19482_1  [L=430]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (430 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 2102.05
//
Query:       MMETSP1061-20121228|19540_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1874.25
//
Query:       MMETSP1061-20121228|19561_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-173  575.0   0.0   1.3e-173  574.8   0.0    1.0  1  TIGR01472 gmd: GDP-mannose 4,6-dehydratase
    3.2e-31  106.3   0.0      3e-30  103.1   0.0    1.9  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
    8.6e-26   88.6   0.0    1.4e-25   87.9   0.0    1.3  1  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    1.2e-18   64.8   0.0    1.2e-15   55.0   0.0    2.7  2  TIGR01179 galE: UDP-glucose 4-epimerase
    3.9e-16   56.9   0.0    1.1e-14   52.1   0.0    2.2  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    0.00061   16.8   0.0     0.0011   16.0   0.0    1.3  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
     0.0012   15.6   0.0     0.0034   14.1   0.0    1.8  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase


Domain annotation for each model (and alignments):
>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  574.8   0.0  2.2e-176  1.3e-173       1     340 [.       7     349 ..       7     351 .. 0.98

  Alignments for each domain:
  == domain 1    score: 574.8 bits;  conditional E-value: 2.2e-176
    TIGR01472   1 kvalitGitGqdGsylaelllekgyevhGlirrsssfnterlehlyeekhkeekalflhyGdltdsssllklieeikpteiynlaaqshvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkektpfnprspyaaaklyayyivvnyreayglfavnGilfnhesprrGetfvtrkitravakialgleeklylGnldakrdwGyakdyveamwlmlqqdkpddyviatgettsvrefvevsfelvgitlewkdk..gikevglik.evgkvvveidkryfrptevdlllGdatkakeklgwkrevslkelvkemveedlk 340
                  kvalitGitGqdGsylaelllekgy vhG +rrsssfnt r++hly++kh++  +lflh+Gdl+d ++l+ l+++i+p+e+ynl+a shv+vsf++pey ad+dg+G lr+l+a+r ++l+k++rfyqastselyG +ke+pq+e+tpf+prspya+ak +a++i vnyreayg++ +nGilfnhesprrG tfvtrkit ava+i lgl++++ylGnldakrdwG+a+dyve mw mlqqd+pddyv+atget+svrefve +f++ git++wk+   +++e+g+ + +  ++ v+id+ yfrptevdlllGdatkak klgw+  ++++e+vkemve+dl 
  MMETSP1061-20121228|19561_1   7 KVALITGITGQDGSYLAELLLEKGYTVHGTVRRSSSFNTGRIDHLYRDKHETGVKLFLHFGDLCDPTNLISLLSKIRPQEVYNLGAMSHVRVSFDMPEYVADCDGVGVLRILQAIRACGLEKRVRFYQASTSELYGMAKEVPQSETTPFYPRSPYAVAKQFAFWILVNYREAYGMYLSNGILFNHESPRRGRTFVTRKITAAVAQIVLGLQKTVYLGNLDAKRDWGHARDYVEGMWRMLQQDEPDDYVLATGETHSVREFVERAFKHAGITIKWKGPagTVEEIGVEEgNEDRILVKIDPVYFRPTEVDLLLGDATKAKTKLGWEATTTFEEIVKEMVEHDLA 349
                  79***************************************************9*****************************************************************************************************************************************************************************************************************************85226899*998725689************************************************96 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.1   0.0   5.2e-33     3e-30       2     239 ..      10     259 ..       9     335 .. 0.77

  Alignments for each domain:
  == domain 1    score: 103.1 bits;  conditional E-value: 5.2e-33
    TIGR04180   2 lvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkk...eievvlGdirdaesvkkavkgv..dvvfhlaaliaiPysyvapesyvetnvkGtlnvlqaardlevekvv...htstsevyGtaqyvPidekhplqaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqsarav...iPtiitqilsg.kkkiklGslsPtrdfnyvkdtvegfiavaesdkavGevinigs 239
                  l+tG  G  Gs+l+e l+ekG++v+  v+  s  + G +d++ ++ ++   ++ +  Gd+ d++ + + ++++  + v+ l a+  +  s+  pe   + +  G l +lqa r  ++ek v   ++stse+yG a+ vP +e+ p  ++sPy+ +k  a  + + + +++ + ++    fn   Pr+    v   i + ++qi+ g +k++ lG+l   rd+ + +d veg+ ++ + d+    v+  g 
  MMETSP1061-20121228|19561_1  10 LITGITGQDGSYLAELLLEKGYTVHGTVRRSSSFNTGRIDHLYRDKHEtgvKLFLHFGDLCDPTNLISLLSKIrpQEVYNLGAMSHVRVSFDMPEYVADCDGVGVLRILQAIRACGLEKRVrfyQASTSELYGMAKEVPQSETTPFYPRSPYAVAKQFAFWILVNYREAYGMYLSNGILFNHESPRRGRTFVtrkITAAVAQIVLGlQKTVYLGNLDAKRDWGHARDYVEGMWRMLQQDEPDDYVLATGE 259
                  89*******************************9******99766554222556678********999998874469******************999*****************99875423389************************************************************986655333455567776663789*************************999875433333332 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.9   0.0   2.4e-28   1.4e-25      50     309 ..      60     345 ..       8     350 .. 0.82

  Alignments for each domain:
  == domain 1    score: 87.9 bits;  conditional E-value: 2.4e-28
    TIGR01181  50 erysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGtytlleavrkelk..evrllhistDevyGdlekddaeftettplaPssPysaskaasdllvrayartyglpvlitrcsnnyGpyq...fpekliPllitnalagkklpvy.GdGqqvrDwlyveDhcraielvlekgrvgevyniggeeertnlevvkiilelldk.......................dedlieyvedrpGhDrryaldaskikreLgwkpkvtfeeglrktvk 309
                   ++ +  gd++d  ++ +ll++ +++ v n+ a shv  s + pe   + + vG+ ++l+a+r++    +vr+ + st e yG  ++     +ettp+ P+sPy+ +k  +  ++  y ++yg+  +     n   p +   f+ + i   + +++ g + +vy G+    rDw +++D +++++ +l++ +  + y ++++e +++ e v+   ++ +                           +i+ v  rp +      da+k k++Lgw+ ++tfee +++ v+
  MMETSP1061-20121228|19561_1  60 VKLFLHFGDLCDPTNLISLLSKIRPQEVYNLGAMSHVRVSFDMPEYVADCDGVGVLRILQAIRACGLekRVRFYQASTSELYGMAKEV--PQSETTPFYPRSPYAVAKQFAFWILVNYREAYGMYLSNGILFNHESPRRgrtFVTRKITAAVAQIVLGLQKTVYlGNLDAKRDWGHARDYVEGMWRMLQQDEP-DDYVLATGETHSVREFVERAFKHAGItikwkgpagtveeigveegnedrILVKIDPVYFRPTEVDLLLGDATKAKTKLGWEATTTFEEIVKEMVE 345
                  3455667*******************************************************99743339*************99988..469*******************************98877777777775333399999****************98999999*****************99876.6799*******************998999***************9653333345668889999888888*********************99987 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.0   0.0   2.1e-18   1.2e-15       3     280 ..      10     279 ..       8     284 .. 0.84
   2 !    6.5   0.0    0.0011      0.67     287     321 ..     310     343 ..     288     351 .. 0.84

  Alignments for each domain:
  == domain 1    score: 55.0 bits;  conditional E-value: 2.1e-18
    TIGR01179   3 LvtGgaGyiGshvvrqllekgkevv..v..lDnlskgskealkalekit..evklvegdladkekleavleeekidaviHfaaliavgEsvkePlkYYennvvntleLleamqkagvkk...liFsssaavYgesekvpisEesplnpinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdik 280
                  L+tG +G  Gs  +  llekg+ v   v       +g  ++l + ++ t  ++ l  gdl d ++l ++l++ +++ v  ++a+ +v  s + P    + + v+ l++l+a+++ g++k   +  +s++ +Yg+ ++vp sE++p  p +pY  +k  + +il ++++a +++ +     Fn    +e+ + G++   + ++   va++++g +++  ++ ++ ++k     RD+ H  D  e+ ++ l++    +e + y l +g+ +sv+e +e++ k +g +ik
  MMETSP1061-20121228|19561_1  10 LITGITGQDGSYLAELLLEKGYTVHgtVrrSSSFNTGRIDHLYRDKHETgvKLFLHFGDLCDPTNLISLLSKIRPQEVYNLGAMSHVRVSFDMPEYVADCDGVGVLRILQAIRACGLEKrvrFYQASTSELYGMAKEVPQSETTPFYPRSPYAVAKQFAFWILVNYREA-YGMYLSNGILFN----HESPRRGRTF-VTRKITAAVAQIVLGLQKT--VYLGNLDAK-----RDWGHARDYVEGMWRMLQQ----DEPDDYVLATGETHSVREFVERAFKHAGITIK 279
                  9*********************97521311345668899999999988866777788*************************************9999999*************999762225569******************************************9.777777666788....4555666544.3457888999999999875..677788766.....9999999999998877664....5678899999***********99999888887 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0011
    TIGR01179 287 RaGDpaslvadaskikrelgwkpkyddLeeiiksa 321
                  R+ ++  l++da k+k++lgw+++ +  eei+k+ 
  MMETSP1061-20121228|19561_1 310 RPTEVDLLLGDATKAKTKLGWEATTT-FEEIVKEM 343
                  78888999***************999.99999976 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0     2e-17   1.1e-14       4     329 ..       6     346 ..       4     363 .. 0.75

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 2e-17
    TIGR02622   4 gkkvlvtGhtGfkGsWlslwLkelGaevaGysldpet.kpnlfellklakklkd...ssvlgdirdaeklekaieevkPeivfhlaaqplvrksYkdPletfetnvlGtvnlleavralesvkav..vlvtsDkvYenkewvwgyretdalGGhDpYsaskaaaelvvasyrksflkeankekiki..asaRaGnviGGGDwaedRlvpDvirals.snkaveiRnpkavrPWqhvLepLsGYlllaek.......lledeaelae.......afnfGPeaeenkkvvelvkkalellagkkaeiekksdk..eapheaklLkLdsdkakkklgwkprlsleeaveatveW 329
                  +k  l+tG tG  Gs+l+  L e G +v+G     ++ ++   + l  +k+ +      ++gd+ d ++l +++++++P+ v+ l a + vr s++ P    + + +G +++l+a+ra+   k v      +   Y   +      et ++    pY+ +k  a  ++  yr+++      + i +   s R G       + + ++ + v + +   +k+v + n +a r W h  + ++G  ++ ++       l ++e++  +       af     + + k +  +v+++     +++ +i  k+d+   +p e +lL  d++kak+klgw+++ ++ee v+ +ve 
  MMETSP1061-20121228|19561_1   6 DKVALITGITGQDGSYLAELLLEKGYTVHGTVRRSSSfNTGRIDHLYRDKHETGvklFLHFGDLCDPTNLISLLSKIRPQEVYNLGAMSHVRVSFDMPEYVADCDGVGVLRILQAIRACGLEKRVrfYQASTSELYGMAKE-VPQSETTPFYPRSPYAVAKQFAFWILVNYREAYGMYL-SNGILFnhESPRRGR-----TFVTRKITAAVAQIVLgLQKTVYLGNLDAKRDWGHARDYVEGMWRMLQQdepddyvLATGETH--SvrefverAFKHAGITIKWKGPAGTVEEIGVEEGNED-RILVKIDPvyFRPTEVDLLLGDATKAKTKLGWEATTTFEEIVKEMVEH 346
                  67789*************************865544312233444433333222333789**********************************************************98766552144566778876544.4568*****************************8865.455544114566655.....577777777777655415789*********************987766523333323333332..1334665688877777677888888887766665544.44444554115789*****************************99985 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.8e-06    0.0011       3     129 ..      10     166 ..       8     181 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.8e-06
    TIGR01214   3 litGakgqlgreLveqlsk.egsevvaltrs.........................qldledpealeellreikPdvvvntaAytdVDkaEseaekayavNalatenlAraaarvg....allvhiSTDYvFDGekkrpYreedetnPlnvYgqsKl 129
                  litG +gq g+ L+e l +  ++++ +++rs                           dl dp +l +ll +i+P+ v n +A+ +V  +   +e +      ++ ++ +a  ++g    +++   ST  ++  +k+ p +e+ +  P + Y+ +K+
  MMETSP1061-20121228|19561_1  10 LITGITGQDGSYLAELLLEkGYTVHGTVRRSssfntgridhlyrdkhetgvklflhFGDLCDPTNLISLLSKIRPQEVYNLGAMSHVRVSFDMPEYVADCDGVGVLRILQAIRACGlekrVRFYQASTSELYGMAKEVPQSETTPFYPRSPYAVAKQ 166
                  89**************9994555666777779*******************9999778***********************************************9999998888733335677889999999999999999999999999999886 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   5.9e-06    0.0034       2     130 ..       8     153 ..       7     175 .. 0.62
   2 ?   -1.4   0.0      0.32   1.9e+02     295     311 ..     320     336 ..     209     346 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 5.9e-06
    TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrr..nleel.........dvEiveGdlkdeaslkkalkGce..alfHvAA..dyrlwakdpeelykanvegtravleaAleagvervv..ytssvatlgvkedgkeadett 130
                   +l+tG tG  Gs +++llle+G++v+  vr++s+ +   +++l         +  +  Gdl d++ l + l+ ++   ++ + A  + r+    pe + + +  g  ++l+a +  g+e+ v  y +s + l   ++  +  ett
  MMETSP1061-20121228|19561_1   8 VALITGITGQDGSYLAELLLEKGYTVHGTVRRSSSFNtgRIDHLyrdkhetgvKLFLHFGDLCDPTNLISLLSKIRpqEVYNLGAmsHVRVSFDMPEYVADCDGVGVLRILQAIRACGLEKRVrfYQASTSELYGMAKEVPQSETT 153
                  589*************************9999886431122222111000000333456777777777666666532256666552244555556666666666666667777666666665544555555555555555555555 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.32
    TIGR03466 295 ssakAereLgyrqrpae 311
                  +++kA+++Lg++++ + 
  MMETSP1061-20121228|19561_1 320 DATKAKTKLGWEATTTF 336
                  56788888887776554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1661.24
//
Query:       MMETSP1061-20121228|19553_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 2166.82
//
Query:       MMETSP1061-20121228|19575_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.6   2.6      0.021   12.5   0.1    2.6  3  TIGR02983 SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family


Domain annotation for each model (and alignments):
>> TIGR02983  SigE-fam_strep: RNA polymerase sigma-70 factor, sigma-E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1     0.059   2.4e+02      83     115 ..      19      52 ..       7      56 .. 0.76
   2 ?   -2.4   0.0      0.21   8.4e+02      97     111 ..     128     142 ..     118     146 .. 0.76
   3 ?   12.5   0.1   5.2e-06     0.021      11      88 ..     148     227 ..     143     251 .. 0.66

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.059
    TIGR02983  83 teelPdae.aedaaadeaeraallealrrLparq 115
                   +  P+++ + +++a+ a   +l eal+ L+a +
  MMETSP1061-20121228|19575_1  19 IDLTPETDaKLEQSAQLARGGQLKEALAMLAALE 52 
                  5567999966677777888899999*99998765 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.21
    TIGR02983  97 deaeraallealrrL 111
                  +++ r++l+ealr++
  MMETSP1061-20121228|19575_1 128 EKKSRDKLVEALREI 142
                  467899999999986 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 5.2e-06
    TIGR02983  11 fvaarakrLlrtaalLt...gdpaeAeDlvqealvkaykrwdrirdadapeaYvrrvlvnlaisrwRrrrv.eelateelPd 88 
                  f++ +++rL+r  a++    gd+++A D++qe+ v++y   ++ ++ +     +r +l+++    +R   v  ++++++l +
  MMETSP1061-20121228|19575_1 148 FLEGERARLTRCMAMILeqeGDTSTAADVLQEVHVETYGSLSKREKVEYILEQMRLTLAKKDY--VRSAIVaGKVSRKHLQE 227
                  556667778876554443679*****************8765554444444444544444433..55555555555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 1941.52
//
Query:       MMETSP1061-20121228|19576_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 2701.89
//
Query:       MMETSP1061-20121228|19634_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|19649_1  [L=640]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (640 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 2484.50
//
Query:       MMETSP1061-20121228|19662_1  [L=904]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (904 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.35
# Mc/sec: 3409.09
//
Query:       MMETSP1061-20121228|19708_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.6   0.1      0.017   11.5   0.0    1.0  1  TIGR02361 dak_ATP: dihydroxyacetone kinase


Domain annotation for each model (and alignments):
>> TIGR02361  dak_ATP: dihydroxyacetone kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   4.2e-06     0.017     505     542 ..      13      49 ..       9      57 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.2e-06
    TIGR02361 505 kAraGdrTliDaLapfvealeaskdelekavkaaekga 542
                  +A + drT++D L++ v++l++ ++  +  +kaa++ a
  MMETSP1061-20121228|19708_1  13 EAVKDDRTVLDVLWSYVKNLQRARN-TKGDTKAAKSLA 49 
                  57889****************9999.777777777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 332.84
//
Query:       MMETSP1061-20121228|19716_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-07   26.1   9.8    2.3e-06   24.3   6.8    1.8  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0032   15.1   3.5     0.0078   13.8   1.1    2.5  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
  ------ inclusion threshold ------
      0.024   12.0   8.6      0.037   11.4   1.3    2.3  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
      0.037   11.2   3.3      0.041   11.0   0.5    2.1  2  TIGR00341 TIGR00341: TIGR00341 family protein


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   6.8   2.2e-09   2.3e-06      75     220 ..     390     548 ..     364     571 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 2.2e-09
    TIGR00990  75 rkrkdaekeaekkaeekkstapkaaavesadelpeidessvvnlseeerk...kyaaklkekGnkayrnkdfdkaielyskal....llkedP............vyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltas 220
                   k k+ +k+  kk  ++k++ pk+     +++  ei       +s+++ +   k   + k +Gn+a++  ++ +a+ lys al    +l +d             v  snraac+  l++ ek  +d+ +a  ++++ vka+ r   a   + +y+da+  l+a 
  MMETSP1061-20121228|19716_1 390 IKFKEVDKDGAKK--ANKTEVPKEEDTPVVEDVEEIYA----SMSKDDIDaivKECEQNKARGNEAFGTGEYAQAVLLYSLALdkadELPDDKsnktkkqlfardVTLSNRAACFLKLGQHEKAAADAKQAYGYNNQNVKAFFRHGLALHAMKQYKDAISILSAA 548
                  4556666666663..34444444444444444444432....23333333000334567899******************9993333232221223333333333889**************************************************9888775 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.28   2.9e+02      65      78 ..     452     465 ..     438     473 .. 0.71
   2 !   13.8   1.1   7.7e-06    0.0078      59     124 ..     495     560 ..     490     571 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.28
    TIGR02552  65 lkeyeeAiaaYala 78 
                  ++ey++A+  Y+la
  MMETSP1061-20121228|19716_1 452 TGEYAQAVLLYSLA 465
                  45666666666666 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 7.7e-06
    TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyse 124
                  aac+ +l+++e+A+a  + a+  + ++ +++++ +  l a++++++A + L +a ++  ++++ +e
  MMETSP1061-20121228|19716_1 495 AACFLKLGQHEKAAADAKQAYGYNNQNVKAFFRHGLALHAMKQYKDAISILSAAHKLEPKNKSIKE 560
                  788888888888888888888888888888888888888888888888888888888887776555 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.5    0.0055       5.6     147     200 ..      37      89 ..      23      99 .. 0.78
   2 ?   11.4   1.3   3.6e-05     0.037      70     127 ..     493     550 ..     479     568 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.0055
    TIGR02521 147 kagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtve 200
                   +++ e+  +  ++al +d k+++s  + a    k++++ +A+++l+ryq++  
  MMETSP1061-20121228|19716_1  37 TEQEEEQEIEENKKALGLDGKYAHSQAD-ADERKKAKDVLKAKKVLDRYQKRES 89 
                  45555666666799*********99986.55667999*************9865 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 3.6e-05
    TIGR02521  70 alAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAie 127
                   +A  + +lg++ekA++  ++A   +++n ++    G  L ++k+y++A+  ++aA +
  MMETSP1061-20121228|19716_1 493 NRAACFLKLGQHEKAAADAKQAYGYNNQNVKAFFRHGLALHAMKQYKDAISILSAAHK 550
                  4566666666666666666666666666666666666666666666666666666654 PP

>> TIGR00341  TIGR00341: TIGR00341 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.5     4e-05     0.041      18     119 ..      31     137 ..      25     143 .. 0.78
   2 ?   -0.6   0.1      0.14   1.4e+02      98     161 ..     169     232 ..     149     254 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4e-05
    TIGR00341  18 veeilkkedeeeiaiienvktsieddriellvadkdaE...kiVsklKell..lgekesrvvvykPefvisPiserEeaeektrlsveeLyeiaksiaklskerivv 119
                  +  +   e+eee  i+en k+ + d++    +ad+d     k V+k K++l  ++++es v       + +P s    +ee+ +  v + + i++++++  k ++v+
  MMETSP1061-20121228|19716_1  31 RTLVSETEQEEEQEIEENKKALGLDGKYAHSQADADERkkaKDVLKAKKVLdrYQKRESAVRAELKGLLGPPPSSDAGKEEESKSVVSKTVRITRDMIDAGKRVVVI 137
                  55566689999***********************965411145888889886666777777766667777887777777777778999*********9998887765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.14
    TIGR00341  98 sveeLyeiaksiaklskerivvvilasivavaGlikdnvalligamiiAPLlgpviglavslsv 161
                   +++  e a++ ++ ske+ v   + +++       +n ++li   ii   l+ ++ + v + v
  MMETSP1061-20121228|19716_1 169 VPKQYSEDAENDVDESKENGVHRKIYGLIKCFLTNVHNCTVLIKCKIISGTLEINHCSNVVVKV 232
                  5555566677777777888888888888887777789999999999999999999999887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       262  (0.0638713); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.24
# Mc/sec: 3178.74
//
Query:       MMETSP1061-20121228|19730_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1383.02
//
Query:       MMETSP1061-20121228|19742_1  [L=575]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (575 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.26
# Mc/sec: 2918.99
//
Query:       MMETSP1061-20121228|19741_1  [L=662]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (662 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       403  (0.0982448); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 2818.61
//
Query:       MMETSP1061-20121228|19785_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.4   0.1      0.059   10.6   0.1    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.1   1.4e-05     0.059      31      78 ..     218     267 ..     209     285 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.4e-05
    TIGR02021  31 qtvreGreamrek.llewlpkd.slkGkkvlDAGCGtGllsielAkrGai 78 
                  ++v+  r+++ ++ l+e  +kd + +G  vlD   G G lsi+lA +G  
  MMETSP1061-20121228|19785_1 218 NKVKGMRATIFATwLIETYGKDkLAEGGGVLDVAGGKGKLSIQLALQGKV 267
                  56666677776652557788997889*********************964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1647.86
//
Query:       MMETSP1061-20121228|19791_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       831  (0.202584); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1061-20121228|19805_1  [L=760]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (760 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.32
# Mc/sec: 3134.74
//
Query:       MMETSP1061-20121228|19814_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1873.23
//
Query:       MMETSP1061-20121228|19825_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1729.06
//
Query:       MMETSP1061-20121228|19852_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 2007.33
//
Query:       MMETSP1061-20121228|19858_1  [L=365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 2007.33
//
Query:       MMETSP1061-20121228|19874_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1371.54
//
Query:       MMETSP1061-20121228|19884_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|19896_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1767.51
//
Query:       MMETSP1061-20121228|19902_1  [L=519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00041   17.1   0.0       0.25    7.9   0.0    2.2  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    0.00049   17.0   0.0       0.12    9.2   0.0    2.1  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
     0.0044   14.5   0.0       0.17    9.4   0.0    2.4  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
  ------ inclusion threshold ------
      0.011   12.7   0.1       0.43    7.4   0.0    2.2  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
      0.017   12.7   0.0       0.11   10.1   0.0    2.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
      0.031   11.5   0.0       0.34    8.1   0.0    2.5  3  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
      0.053   10.5   0.0       0.41    7.6   0.0    2.2  3  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH


Domain annotation for each model (and alignments):
>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0   0.00043      0.25      12      32 ..     109     129 ..      99     145 .. 0.85
   2 !    7.0   0.0   0.00081      0.47      85     201 ..     225     339 ..     192     367 .. 0.74

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00043
    TIGR03918  12 lfGrrNaGKSsliNaltgqdv 32 
                  l+G+  +GKSs+iN+++++d+
  MMETSP1061-20121228|19902_1 109 LVGNHSSGKSSFINYIIQRDI 129
                  89***************9997 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.00081
    TIGR03918  85 ektdlallvvdaeae..leeleeelleelkekkipvivvlnkidlkeeekekeklekkkeeevvlvsakekegieel.kealiellpeeaeektlvgdLvkkgdlvvlvvPiDkaAPkgR 201
                  +++d++l+ +d ++   + e+ + ll++l+ ++ +++++lnk+d+ e+ ++ +++  +   ++ +  +  ++++  + + +l ++ +++++ ++ ++dL +++d vv +    ++APk R
  MMETSP1061-20121228|19902_1 225 HRADIVLVFFDPDKPgtTGETMSVLLNSLSGMDHKLLIILNKADQFEKIHDFARAYGSLCWNLSK--VIPRKDLPPIfTMSLKNEDSQTSQLPASLSDLAANKDDVVEL---CMKAPKRR 339
                  789******999864114455567899*******************9976544444333333333..334444544414455555555558888889998888877643...46777777 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0024       1.4     180     199 ..     109     128 ..      70     136 .. 0.78
   2 !    9.2   0.0    0.0002      0.12      48     131 ..     189     280 ..     178     291 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0024
    TIGR03594 180 iiGrpNvGKStLvNallgee 199
                  ++G   +GKS+++N++++++
  MMETSP1061-20121228|19902_1 109 LVGNHSSGKSSFINYIIQRD 128
                  68889999999999998765 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.0002
    TIGR03594  48 kefiliDTgGl....eeeedelek..eireqaelaieeadvilfvvdare.glteeDe.eiaklLrkskkpvilvvNKvdnkkeeaeaaefy 131
                   +f+l+D +G+      +++ +++  +    ++   + ad++l+ +d  + g+t e    + + L   ++++++++NK+d+ ++ ++ a++y
  MMETSP1061-20121228|19902_1 189 LNFMLVDSPGMidspGGNKEVMDRgyDFPGVVRWFAHRADIVLVFFDPDKpGTTGETMsVLLNSLSGMDHKLLIILNKADQFEKIHDFARAY 280
                  679999999995442112222222113445688899***********887344444441467999999*************98877766655 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0003      0.17      11      42 ..      97     128 ..      90     138 .. 0.81
   2 ?    2.7   0.0     0.033        19      97     144 ..     225     272 ..     181     310 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0003
    TIGR03598  11 kqlpedklpeiafaGrSNvGKSsliNaLtnrk 42 
                  k+ p+++lp   ++G   +GKSs+iN +++r 
  MMETSP1061-20121228|19902_1  97 KSSPHTSLPFCLLVGNHSSGKSSFINYIIQRD 128
                  5567777778889***************9985 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.033
    TIGR03598  97 krenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkk 144
                  +r+++  v++  D   ++ e+   ll+ l+  + ++l++l+KaD+++k
  MMETSP1061-20121228|19902_1 225 HRADIVLVFFDPDKPGTTGETMSVLLNSLSGMDHKLLIILNKADQFEK 272
                  5555544444444444444555567889999999**********9986 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.016       9.1     213     233 ..     108     128 ..      60     136 .. 0.76
   2 ?    7.4   0.0   0.00073      0.43     287     329 ..     225     270 ..     220     366 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.016
    TIGR00450 213 aivGktNvGKSSLlNallkkd 233
                   +vG+   GKSS +N ++++d
  MMETSP1061-20121228|19902_1 108 LLVGNHSSGKSSFINYIIQRD 128
                  489************999887 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.00073
    TIGR00450 287 keadlvlyvlDaskpltkdd...eliitlkkkkkdlllvlNKiDLa 329
                  ++ad+vl  +D  kp t  +    l++ l   +++ll++lNK+D  
  MMETSP1061-20121228|19902_1 225 HRADIVLVFFDPDKPGTTGEtmsVLLNSLSGMDHKLLIILNKADQF 270
                  689***********988765344688999999************76 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00018      0.11       4      38 ..     105     137 ..     102     294 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00018
    TIGR00231   4 ikivivGhvdvGKstLlnsllknkisiteskpgvt 38 
                    +++vG  ++GKs+ +n++++++  i++++   t
  MMETSP1061-20121228|19902_1 105 PFCLLVGNHSSGKSSFINYIIQRD--IQKAGVAPT 137
                  5799*******************9..444433333 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.0   0.00057      0.34     122     150 ..     108     136 ..      65     138 .. 0.85
   2 ?   -1.6   0.0       0.5   2.9e+02     164     174 ..     190     200 ..     180     208 .. 0.81
   3 ?   -0.9   0.0      0.32   1.9e+02      42      62 ..     250     271 ..     224     280 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00057
    TIGR03596 122 lvvGiPNvGKStliNrlakkkvakvgnkp 150
                  l vG    GKS++iN ++++ + k+g  p
  MMETSP1061-20121228|19902_1 108 LLVGNHSSGKSSFINYIIQRDIQKAGVAP 136
                  66777788***************999777 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.5
    TIGR03596 164 eleLlDtPGil 174
                  +++L+D+PG++
  MMETSP1061-20121228|19902_1 190 NFMLVDSPGMI 200
                  899******97 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.32
    TIGR03596  42 leelvk.nkprlivlnkaDlad 62 
                  l++l + + + li+lnkaD  +
  MMETSP1061-20121228|19902_1 250 LNSLSGmDHKLLIILNKADQFE 271
                  4455545788999*****9876 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   0.0    0.0007      0.41     159     182 ..     108     131 ..      61     142 .. 0.85
   2 ?   -0.2   0.0      0.15        91     199     219 ..     185     203 ..     170     214 .. 0.68
   3 ?   -4.2   0.0       2.6   1.5e+03      92     106 ..     258     272 ..     254     277 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0007
    TIGR03597 159 yvvGvtNVGKSsliNkllklnkgk 182
                  ++vG    GKSs+iN +++   +k
  MMETSP1061-20121228|19902_1 108 LLVGNHSSGKSSFINYIIQRDIQK 131
                  68999*************876555 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.15
    TIGR03597 199 ieipldkesvllDtpGiinee 219
                  ++ pl  + +l+D+pG+i++ 
  MMETSP1061-20121228|19902_1 185 RKSPL--NFMLVDSPGMIDSP 203
                  33334..799*******9875 PP

  == domain 3    score: -4.2 bits;  conditional E-value: 2.6
    TIGR03597  92 nkvllvvNKidllpk 106
                  +k+l++ NK d + k
  MMETSP1061-20121228|19902_1 258 HKLLIILNKADQFEK 272
                  6889999**998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.29u 0.17s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 2140.70
//
Query:       MMETSP1061-20121228|19939_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.34
# Mc/sec: 217.39
//
Query:       MMETSP1061-20121228|19943_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1021.48
//
Query:       MMETSP1061-20121228|20005_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.9e-104  344.9   0.0   6.6e-104  344.8   0.0    1.0  1  TIGR00417 speE: spermidine synthase
  ------ inclusion threshold ------
      0.045   10.1   0.0      0.081    9.2   0.0    1.4  2  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.8   0.0  3.2e-107  6.6e-104       1     271 []      13     285 ..      13     285 .. 0.96

  Alignments for each domain:
  == domain 1    score: 344.8 bits;  conditional E-value: 3.2e-107
    TIGR00417   1 Wfeelkdk..nvaltlkvdkvLyeeksefqdvlifeteefGkvlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpklsgalddervdlkidDGvkflrdtekkfDviivDstdPvGpaetlfekefyelvkkalnedGvivaqseslllqlelikdlkrkvkevfekvelylaaiPtypsgllsfivaskn.klsnleveeerikeeaedlktkyynkeihkaafvlPkf 271
                  Wf+e      ++a++lkv+kvL + +++fqd+l+fe+e++G+vlvlDgv+q+terDe +y+e+iah+pl+ah+npkkvlviGGGDGgvlrev++h  veei+ +eiDe vi +skk+lp+l+  +dd+rv +ki+DG kf+++ ++ fDvii+Ds+dPvGpa+ lfe  fy+ + ++l e+G++ +q e ++l+l+lik l ++++++f++ve+ +++iPtypsg+++fiva+k  k++++ ++e+ +   + ++++kyy++e+hka+fvlP f
  MMETSP1061-20121228|20005_1  13 WFHERGVLwpGQAMSLKVKKVLDHYRTDFQDLLVFESENHGNVLVLDGVIQVTERDEHAYQEMIAHIPLFAHPNPKKVLVIGGGDGGVLREVARHPGVEEIVECEIDEGVIIASKKHLPSLAKGYDDPRVSVKIMDGAKFMEENQEAFDVIITDSSDPVGPASVLFETPFYNAMYNSLREGGIVCTQGECMWLHLDLIKPLVESISRTFSSVEYAYTTIPTYPSGQIGFIVAGKGrKTCKVPEREADMT-PELQKQLKYYTPELHKASFVLPAF 285
                  666655545589*****************************************************************************************************************************************************************************************************************************9767888888888776.566889****************87 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   3.9e-05     0.081     281     357 ..      85     161 ..      63     166 .. 0.82
   2 ?   -3.7   0.0      0.33   6.8e+02     386     408 ..     173     193 ..     171     195 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 3.9e-05
    TIGR04074 281 sgarsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrl.kldrlsekqrervellqssltYrDkrlkgfd 357
                   + ++vl +G G+g +l++++++  +e+iv +++    + ++k++l +l +  +  r  v+++ ++    ++  + fd
  MMETSP1061-20121228|20005_1  85 PNPKKVLVIGGGDGGVLREVARHPGVEEIVECEIDEGVIIASKKHLpSLAKGYDDPRVSVKIMDGAKFM-EENQEAFD 161
                  56799*********************************9999999944677778899999999988544.44445555 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.33
    TIGR04074 386 PklvivttPnaeynvlfeeleag 408
                  P+ v+  tP   yn+++++l++g
  MMETSP1061-20121228|20005_1 173 PASVLFETPF--YNAMYNSLREG 193
                  8889999995..99999999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1502.65
//
Query:       MMETSP1061-20121228|20004_1  [L=416]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (416 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1960.98
//
Query:       MMETSP1061-20121228|20020_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 482.05
//
Query:       MMETSP1061-20121228|20030_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-30  101.5   7.5    1.7e-29  100.6   5.2    1.4  1  TIGR00855 L12: ribosomal protein L7/L12


Domain annotation for each model (and alignments):
>> TIGR00855  L12: ribosomal protein L7/L12
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   5.2   4.1e-33   1.7e-29       7     124 ..     139     265 ..     134     266 .] 0.84

  Alignments for each domain:
  == domain 1    score: 100.6 bits;  conditional E-value: 4.1e-33
    TIGR00855   7 eeiiealkeltvlelselvkalEekfgvsAaaav......aaaaaaaaa..aeaaeektEfdvilk.aaadkkiavikvvreitGlgLkEAkelvekaPkalkekvskeeAeelkkkleeaGakvev 124
                  +e+ +++ +l++lel+el +++ ++fg     +       ++aaa+a+a   ea eekt fd++l    a+ ki+vik++r i+GlgLkEAkelve+aPk++++++++++Aeelk+kle++Ga+ve+
  MMETSP1061-20121228|20030_1 139 HELAHQIVHLNLLELKELTEKIADHFGFDDEMMAaqygggGVAAAGAGApeEEAVEEKTIFDLKLVgFDAKAKIKVIKEIRAIAGLGLKEAKELVEGAPKVVQKDLKQDKAEELKEKLEAVGAQVEI 265
                  6788999*******************97543333222333333344444778899***********445666*****************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.30
# Mc/sec: 1170.30
//
Query:       MMETSP1061-20121228|20021_1  [L=805]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (805 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 2125.02
//
Query:       MMETSP1061-20121228|20033_1  [L=1044]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1059.5  15.4   1.1e-283  941.0   2.8    3.0  2  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   1.7e-184  612.8  11.5   3.5e-174  578.7   4.8    4.3  2  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   1.6e-138  461.2  15.0   6.1e-137  455.9   5.0    3.4  2  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   2.3e-130  434.1   7.8    1.5e-82  275.7   1.2    3.2  3  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   1.2e-127  424.8  10.1    7.7e-93  309.6   0.0    3.7  3  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   2.2e-112  374.5   3.2    1.3e-66  223.2   2.6    2.1  2  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   7.1e-102  339.6   8.2    2.1e-52  175.9   1.0    2.5  3  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
    1.9e-91  304.7  12.3    1.5e-37  126.9   2.7    6.1  5  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    2.2e-66  222.7  11.4    2.6e-30  103.6   4.3    3.4  3  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    5.6e-54  180.9   0.1    1.2e-37  126.8   0.1    2.3  2  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
      2e-48  163.2  16.3    2.5e-20   70.5   0.0    4.5  4  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    1.9e-47  160.2  14.1    4.3e-18   63.3   8.0    3.8  3  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
      6e-34  114.9  12.0    2.5e-16   56.7   0.0    3.1  3  TIGR01497 kdpB: K+-transporting ATPase, B subunit
    4.6e-25   85.4   5.0    1.8e-15   53.6   0.1    5.3  4  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
      1e-05   23.1   0.7    0.00037   18.0   0.4    2.3  2  TIGR00099 Cof-subfamily: Cof-like hydrolase
    4.4e-05   21.2   0.4      0.054   11.2   0.0    3.1  4  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
    0.00012   19.9   0.0    0.00056   17.8   0.0    2.2  2  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
    0.00014   19.4   0.2     0.0011   16.4   0.0    2.3  3  TIGR00338 serB: phosphoserine phosphatase SerB


Domain annotation for each model (and alignments):
>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  941.0   2.8  4.8e-286  1.1e-283       1     705 [.      53     850 ..      53     858 .. 0.88
   2 !  120.6   2.5   5.5e-38   1.3e-35     703     799 .]     929    1025 ..     922    1025 .. 0.97

  Alignments for each domain:
  == domain 1    score: 941.0 bits;  conditional E-value: 4.8e-286
    TIGR01116   1 vleqfedllvrilllaavvsfvl.........vaalvePlvillilvlnaivGvwqernaekaiealkeleseealvlrdark.....akdlvpGdivelavGdkvpadvrllel..kslkvdqsiltGesvsvekktesvkkekaavqdkknmlfsGtlvvaGkalgvvvrtGvnteiGkirkevkeaee..ektPlkkkldefGeklskvialicilvwvinikkfl..........aiyyfkiavalavaaiPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkmsvaklvale......kefkvegttyepveakik.......dleelakiaalcndsklavdkkkvekvGeateaalkvlveklglsaaknkkslksre.ala..cnslikkkatlefsrdrksmsvlvksn.....klfvkGapeellersthill.kgsavPltekakqkilaslkelssealrclalavke.....................esklifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGil........ssftGkefee............leekkalvfsrvePshklklve.lkeldqivamtGdGvndaPalkkadiGiamG.sGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifltaalgi.ealipvqllWvnlvtdGlPatalgfnppdkdilkkpprkedeplitgwlflrylviGvyvGlatvaaliwykqk 705
                  vleqf+d+lv+ill+aa++sfvl         v a+veP villil++naivGvwqe+nae+a+ealk+++s +a  lrd+ +     +++lvpGdiv++ vGd+ padvrl +l   +l++d+  ltGes++v k+ +++ +  +++ d+knm+f+Gt+++ Gka+gvv++tG+ teiGki+++v+ea+e  ektPl++kldefG++l++vi+ ic+lvwv+n ++f+          +iyy+kiaval vaaiPeGlPavit clalGt+km k+na+vrklPsvetlGc+tvicsdktGtlttn+m v  lv+ +      ke++v+gt y+p++++i+       +le++a+++alcn++++ + + ++ ++Ge+teaalk+lvek+gl++   + +  ++   ++   +  ++k+atlefsrdrksmsvl+k++     +l+vkGa+e ll+r+t ++  +gs+  +++ ++++++a ++++s+  lr+l++a+k+                     es l+f+G+ g+kdPPr+ev++ai+ c++aG+rvi+itGdnk taeaiar +Gi+        +sftG ef +            ++   ++vfsr+eP++k+ lv+ l++ +++ amtGdGvndaPalk+a+iGiamG sGtevakea+d++laddnfativ+a+eeGr+iy nmk+firy+issniGev siflt+a+g+ e+lipvqllWvnlvtdG+Patalgfnppd d++ kppr +d++lit+w+f+ry+viG+yvG+atv +++++ ++
  MMETSP1061-20121228|20033_1  53 VLEQFDDKLVQILLAAALLSFVLaffeevehwVEAFVEPAVILLILIINAIVGVWQEANAENALEALKQMQSLQAPCLRDGVWhdsmpTEELVPGDIVKISVGDRAPADVRLCKLvtATLRSDEGALTGESETVLKTCDAITSG-EKISDQKNMVFAGTTISGGKAIGVVTATGMATEIGKIQSAVTEASEdaEKTPLNQKLDEFGDMLTQVITGICVLVWVMNFNQFFdpvfggvfkgCIYYLKIAVALGVAAIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEALVVPDaeegaiKEYHVTGTEYAPTHGEIEnytsttgNLEQMANVCALCNEAAIRYLEGQYVRTGEPTEAALKCLVEKMGLPGQSAPANDIEKAdYFGrlIQGSFDKEATLEFSRDRKSMSVLCKNKatgdrVLLVKGAAELLLDRCTSLMRpDGSVKTMSATDREALTARITDMSKRPLRVLGMAIKTnmppkeelpsqllnleeyagvESGLTFVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGIFedgesvagKSFTGAEFFQgsisdeerarliMQGGGSRVFSRTEPRDKQLLVKiLRSCGEVPAMTGDGVNDAPALKQASIGIAMGiSGTEVAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFIRYMISSNIGEVFSIFLTSAIGCpEGLIPVQLLWVNLVTDGPPATALGFNPPDPDVMLKPPRGKDDALITNWVFFRYMVIGLYVGFATVGIFVFWYTE 850
                  78********************96555555555799***************************************9988876522222689*********************98733579*********************876.5678889**********************************987653389********************************9766666666779***************************************************************************97633333358**********9887652222223799*****************************************9877765544443033322567899******************9862333369**************987626778899**************************985333333444444444444444689***************************************************95554444449*****96534322233333344556789*************945789***************************99************************************************************9789*******************************************************************99765 PP

  == domain 2    score: 120.6 bits;  conditional E-value: 5.5e-38
    TIGR01116  703 kqkastlslsvlvviemlnalnalsedssllkippwenkwlvaaiasslalhllilyvpllsalfgvvplslteWllvlkvslPvilvdevlklvsr 799 
                   k+kastlslsvlv+iemlnalna+sed+sll+ippw+n++l++a+ass+ lh++ilyvp ++++f + p +  +W+lv+  s Pvi++devlk+++r
  MMETSP1061-20121228|20033_1  929 KMKASTLSLSVLVTIEMLNALNAVSEDGSLLTIPPWVNPYLLLAMASSFILHFMILYVPWMATIFSISPHDAVDWILVFLFSFPVIVIDEVLKYFGR 1025
                   7899******************************************************************************************998 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  578.7   4.8  1.5e-176  3.5e-174       6     746 ..       6     847 ..       2     858 .. 0.82
   2 !   27.2   0.1   7.5e-10   1.7e-07     757     852 ..     931    1026 ..     926    1028 .. 0.95

  Alignments for each domain:
  == domain 1    score: 578.7 bits;  conditional E-value: 1.5e-176
    TIGR01522   6 elsveetlskletdlenGlsssqevsrrrklhGsnelkveeeesllkkflsqfvkdplillllasavvsvllgnidda.......v..sitlail.ivvtvgfvqeyrsekslealnklvpaechliraGkeeh.vlasklvpGdlvelsvGdrvpadlriveav..dlsidesnltGettpvkksseaie...alaersniaymGtlvreGkgkGivvgtGsntefGavfemmqe..iekpktplqksmdklGkdlslvsfivigvivlvGllq......G...kdwlemftisvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtki............y.........tvdklaalslktvavekilkvgalcnnakvkneaasll..gkptdvaliellekfgled.................lretvkrvaevpfsserkymavkvltdsk..kivfvkGateqvleyctsylkkdGkteklteeqkekiqeeaaemaseGlrvlalaskte.....................kdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavk......sskeGekl..delddqqlsevvdk...vavfaraspehklkivkalqkrGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnniknfitfqlstsvaalslvalatvlklenplnamqilwinilmdGppaqslGvepvdkdvlkkpprkrkdkiltkdllkkvlvsaviivvgtl..lvfv 746
                  ++sve++l++ +  le Gls + evs+ rk+hGsnel++ee+ +l++  l+qf +d+l+ +lla+a +s++l  +++        v  ++ l il i   vg  qe  +e++leal+++   ++ ++r G  +  + + +lvpGd+v++svGdr pad+r+ + v   l  de +ltGe++ v k+++ai+   ++++++n+ + Gt +  Gk+ G+v +tG  te G++ + + e  +++ ktpl++ +d++G  l+ v  ++  ++ ++ + q      G   k  +  ++i+v+l vaaipeGlp ++t+ lalG  +m+k++aivrklpsvetlG++ vicsdktGtlt+n+m v  +            y         t ++++  +  t ++e++ +v+alcn+a ++  +++ +  g+pt+ al  l+ek+gl++                 ++ ++ + a + fs +rk m+v ++++ +  ++  vkGa e +l+ cts ++ dG  +++++  +e ++   ++m++  lrvl++a kt+                     + l+f Gl G++dpprp+v+ a++   ++GvrvimitGd ++ta +iar +G+         +s +G+++   +++d++ + ++ +     vf r+ p++k  +vk l++ G+v amtGdGvndapalk a iG+amG +Gt+vakeaadmil+dd+fati+saieeG+ i+ n+k fi++ +s+ +  +  + l+++++ ++ l ++q+lw+n++ dGppa +lG +p d+dv+ kppr ++d ++t+ ++ + +v  + +  +t+  +vf+
  MMETSP1061-20121228|20033_1   6 KVSVEDVLKEHNVTLERGLS-EAEVSELRKIHGSNELEQEEKTPLWQLVLEQF-DDKLVQILLAAALLSFVLAFFEEVehwveafVepAVILLILiINAIVGVWQEANAENALEALKQMQSLQAPCLRDGVWHDsMPTEELVPGDIVKISVGDRAPADVRLCKLVtaTLRSDEGALTGESETVLKTCDAITsgeKISDQKNMVFAGTTISGGKAIGVVTATGMATEIGKIQSAVTEasEDAEKTPLNQKLDEFGDMLTQVITGICVLVWVMNFNQffdpvfGgvfKGCIYYLKIAVALGVAAIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEALvvpdaeegaikeYhvtgteyapTHGEIENYTSTTGNLEQMANVCALCNEAAIRYLEGQYVrtGEPTEAALKCLVEKMGLPGqsapandiekadyfgrlIQGSFDKEATLEFSRDRKSMSVLCKNKATgdRVLLVKGAAELLLDRCTSLMRPDGSVKTMSATDREALTARITDMSKRPLRVLGMAIKTNmppkeelpsqllnleeyagveSGLTFVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGIFEDgesvagKSFTGAEFfqGSISDEERARLIMQgggSRVFSRTEPRDKQLLVKILRSCGEVPAMTGDGVNDAPALKQASIGIAMGISGTEVAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFIRYMISSNIGEVFSIFLTSAIGCPEGLIPVQLLWVNLVTDGPPATALGFNPPDPDVMLKPPRGKDDALITNWVFFRYMVIGLYVGFATVgiFVFW 847
                  789****************8.9*******************************.****************9876654322211122332344444045679999**************************8765155789*********************9977335889****************99963337************************************99987225678*************9998866655555544432222222223446778899*****************************************************************99876111111111111122222222234456667778889*****************98887764489***************8622222222111111111233456778899**********999886533899***************************************************97654222222222222222222222679*************************************************975411111123345655223577887777776533368*******************************************************************************************************************************************************************9999888766665115555 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 7.5e-10
    TIGR01522  757 rdttmtftcfvffdmfnalacrsetksvfeiGlfsnkmflyavgasllGqllvvyvpflqkvfqtealsikdllllllisssvlivdeirklferk 852 
                   + +t++++ +v  +m+nal + se  s++ i    n  +l+a+++s++   +++yvp +  +f        d +l++l s  v+++de+ k+f r+
  MMETSP1061-20121228|20033_1  931 KASTLSLSVLVTIEMLNALNAVSEDGSLLTIPPWVNPYLLLAMASSFILHFMILYVPWMATIFSISPHDAVDWILVFLFSFPVIVIDEVLKYFGRR 1026
                   567999999************************************************************************************997 PP

>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  455.9   5.0  2.7e-139  6.1e-137      42     768 ..      10     828 ..       3     855 .. 0.78
   2 ?   -0.6   0.6      0.25        57     824     877 ..     966    1021 ..     930    1024 .. 0.75

  Alignments for each domain:
  == domain 1    score: 455.9 bits;  conditional E-value: 2.7e-139
    TIGR01517  42 egiakklktdlneGvssselerRekvygknelpekkeksflqlvwealsDktlilLsvaavvslvvg..eekeeketgwieGvailvsvllvvlvtavnDykkelqfreLnekkeekkikviRggq.eiqisiadvvvGDivslstGdvvpaDgvlis..GlklkiDessltGesdpikkg.............kekLlsGtkvlegsgrmlvtavGvnsvtGkl...ltelreageeeplqlkLselasligkfGlgsavllllvlvlryviekivedteekaktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvv........kgyigeeavrnil.......veaivlnss...aeeekd...........kgkeefiGsktetalLelvklllkdvk....ekrkeekvv...........kiypfeserkkmsvvvkhs.eglRl.fikGaseivlkkcekkldsngeakeisekk.devedeienlasealRtislaykdelpekds.p............nkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltagel....alegkefrkdkilpk....l.......rvlaRssPlDkqlLve.lkklgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvnvvavilafvgalisstspLtavqlLWvnlimDtLaaLaLateePteelldRkPigrkaplisrsmwkn 768
                  e + k  ++ l+ G+s++e+ + +k++g+nel ++++ +++qlv+e ++Dk++++L  aa+ s+v    ee e+    ++e + il+ +++  +v   ++ + e     L++ ++ +    +R+g  +  ++  ++v GDiv++s+Gd  paD  l +     l+ De +ltGes+++ k+             k+ +++Gt++  g++ ++vta G+ ++ Gk+   +te +e+ e++pl +kL+e  ++++++  g+ vl+ ++ + ++ ++ +  +     k  + ++ iav + v a+PegLP  +tl La ++kk++k n++vR+L + et+G+ t iCsDktGtLt+n+m+v         +g i e++v++         +e+ +  +     + +++           +g+    G++te al  lv++++ + +    + +++   +           ++  f+ +rk+msv+ k++  g R+  +kGa+e  l +c++ +  +g +k +s+++ + +  +i +++ + lR + +a k ++p k++ p            ++gl+++++ GikdP r++vr a+k cq+aG+ v m+tGDn +ta+aiar+ gi + ge+    +  g ef + +i ++    l       rv++R +P DkqlLv+ l++ gev a+tGDG nDaPaLk+a +G+amgi+Gtevakea+D+il dDnfa+iv a+  GR++y ++k f+ + +  n+  v   f+++ i     L  vqlLWvnl+ D   a aL  ++P+++++ ++P+g++ +li+  ++  
  MMETSP1061-20121228|20033_1  10 EDVLKEHNVTLERGLSEAEVSELRKIHGSNELEQEEKTPLWQLVLEQFDDKLVQILLAAALLSFVLAffEEVEHWVEAFVEPAVILLILIINAIVGVWQEANAENALEALKQMQSLQ-APCLRDGVwHDSMPTEELVPGDIVKISVGDRAPADVRLCKlvTATLRSDEGALTGESETVLKTcdaitsgekisdqKNMVFAGTTISGGKAIGVVTATGMATEIGKIqsaVTEASEDAEKTPLNQKLDEFGDMLTQVITGICVLVWVMNFNQF-FDPVFGGV---FKGCIYYLKIAVALGVAAIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEalvvpdaeEGAIKEYHVTGTEyapthgeIENYTSTTGnleQMANVCalcneaairylEGQYVRTGEPTEAALKCLVEKMGLPGQsapaNDIEKADYFgrliqgsfdkeATLEFSRDRKSMSVLCKNKaTGDRVlLVKGAAELLLDRCTSLMRPDGSVKTMSATDrEALTARITDMSKRPLRVLGMAIKTNMPPKEElPsqllnleeyagvESGLTFVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGIFEDGESvagkSFTGAEFFQGSISDEerarLimqgggsRVFSRTEPRDKQLLVKiLRSCGEVPAMTGDGVNDAPALKQASIGIAMGISGTEVAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFIRYMISSNIGEVFSIFLTSAIGCPEGLIPVQLLWVNLVTDGPPATALGFNPPDPDVMLKPPRGKDDALITNWVFFR 828
                  66777788999*****************************************************98733555666778888888888888888888888888888777777665544.4678998626689**********************76544224599************9877611111111111113345678888999*****************933344555566779*******************9999887776665.66666654...45567778899**************************************************************9952222333357788888876531121111222222111000111222111111111225666778*********999998755431111334333322222222223325789************987346775268***********************998761567889****************999876653222222222233336799***************************************************98876222246789998888876433332333444479*************956899*****************************************************************************************************************************************877644 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.25
    TIGR01517  824 naifvaivl..itlavqviivefgGaalsvvslsieqWllcvllgalslilgvllr 877 
                   n + +  ++  ++l + ++ v    + +s+++     W+l  l ++  +++  +l+
  MMETSP1061-20121228|20033_1  966 NPYLLLAMAssFILHFMILYVPWMATIFSISPHDAVDWILVFLFSFPVIVIDEVLK 1021
                   54544444322788999**************************9999988887776 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.7   1.2   6.7e-85   1.5e-82      18     613 ..       5     633 ..       1     638 [. 0.78
   2 !  148.9   0.0   1.4e-46   3.2e-44     660     845 ..     663     848 ..     647     880 .. 0.82
   3 !   11.5   0.2   4.6e-05      0.01     925     986 ..     966    1027 ..     933    1037 .. 0.92

  Alignments for each domain:
  == domain 1    score: 275.7 bits;  conditional E-value: 6.7e-85
    TIGR01106  18 hklsleelerkyetdlskglsearaaellardgpnaltppkttpeyvkfarqlfgglslllwigailcflaygiqaaeeeepsednlylgvvlsavvivtgvfsyyqeaksskilesfknlvpqqalvirdge.klsinaeevvvgdlvevkggdripadlriis..akglkvdnssltgesepqtrspef..thenpletrniaffstncvegtargivvstgdrtvlgriasla..sglesgktpiaieiehfidiitgvavflgvsffilslileyt.....fleavifligii....vanvpegllatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmtvahlwfdn....qiheadttedqs....g..vsfdkssetwkalsriatlcnravfkagq........envpvlkrav..agdasesallkfielalgsvkelrerykkvveipfnstnkyqlsihekedasepryllvmkgaperilercssili.kgkeqpldeelkeafqnaylelgglgervlgfc.hlyl.peeqypegfkfdvddvnfpvenlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiisegne 613
                  +k+s+e++ +++++ l++glsea ++el +  g n l   ++tp +   ++q+   l  +l  +a+l f+   +   ee e   + +    v+ +++i+  + + +qea + + le++k++   qa  +rdg  + s+ +ee+v gd+v++  gdr pad+r+ +  +  l+ d+ +ltgese   ++ +   + e+  + +n++f  t++  g a g+v +tg  t +g+i s    +  +++ktp+  +++ f d++t v   + v  +++ +   ++     +++  i+++ i     va +pegl a +t+cl+l +k++ ++n +v++l +vetlg  +vicsdktgtlt n+m v  l + +     i e   t  +     g   ++  ++   + ++++ +lcn a+++  +           + lk  v  +g   +sa    ie a    + ++  + k + + f   ++  +s+  k++a+++r ll +kga e +l+rc+s++  +g  +++    +ea+     ++     rvlg++ +  + p+e+ p+   ++ ++     ++l+fvgl  + dppr  v  a++ c+ ag++vim+tgd   ta aia+ vgi  +g+ 
  MMETSP1061-20121228|20033_1   5 YKVSVEDVLKEHNVTLERGLSEAEVSELRKIHGSNELEQEEKTPLWQLVLEQFDDKLVQILLAAALLSFV---LAFFEEVEHWVEAFVEPAVILLILIINAIVGVWQEANAENALEALKQMQSLQAPCLRDGVwHDSMPTEELVPGDIVKISVGDRAPADVRLCKlvTATLRSDEGALTGESETVLKTCDAitSGEKISDQKNMVFAGTTISGGKAIGVVTATGMATEIGKIQSAVteASEDAEKTPLNQKLDEFGDMLTQVITGICVLVWVMNFNQFFDpvfggVFKGCIYYLKIAvalgVAAIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEALVVPDaeegAIKEYHVTGTEYapthGeiENYTSTTGNLEQMANVCALCNEAAIRYLEgqyvrtgePTEAALKCLVekMGLPGQSAPANDIEKADYFGRLIQGSFDKEATLEFSR-DRKSMSVLCKNKATGDRVLL-VKGAAELLLDRCTSLMRpDGSVKTMSATDREALTARITDMSKRPLRVLGMAiKTNMpPKEELPS-QLLNLEEYAGVESGLTFVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGIFEDGES 633
                  799***************************************************9999999889888775...4445555666666666777888999**********************************735689************************965227889*************99988852144667789*******************************876511456899*********997665555444444444444433222111125566677666551222689*********************************************************99987431222466655544332011121123455555678999********9987543001111102222233222113444444444445544444455566667777777754.44567888777777777666.5*************996489*****************************963445515666665.5789*************************************************************999865 PP

  == domain 2    score: 148.9 bits;  conditional E-value: 1.4e-46
    TIGR01106 660 teivfartspqqkliivegcqrqgaivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnipeitpflifiivniplp..lgtvtilcidlgtdlvpaislayekaesdimkrkprnpkkdklvnerlislaygqigliqala..gfltyfv 845
                     vf+rt p++k ++v+  +  g + a+tgdgvnd+palk+a ig+amgi+g++v+k+aadmil ddnfa+iv+ +eegr i+ n+k  i y ++sni e+    if++  i  p  l  v +l ++l td  pa +l ++  + d+m + pr  k d l+ +  + + y+ igl   +a  g+++++ 
  MMETSP1061-20121228|20033_1 663 GSRVFSRTEPRDKQLLVKILRSCGEVPAMTGDGVNDAPALKQASIGIAMGISGTEVAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFIRYMISSNIGEVF--SIFLTSAIGCPegLIPVQLLWVNLVTDGPPATALGFNPPDPDVMLKPPRG-KDDALITN-WVFFRYMVIGLYVGFAtvGIFVFWY 848
                  5679*************************************************************************************************95..5556555555500556789*************************999997.56777765.5778999999987655114444433 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 4.6e-05
    TIGR01106  925 nkililglveevalaaflsycpgmevalrllplkltwwlvalpysllifvydevrkliirrr 986 
                   n  l+l++ +  +l  ++ y+p m +++++ p  +  w+  + +s+ + v dev k++ rr+
  MMETSP1061-20121228|20033_1  966 NPYLLLAMASSFILHFMILYVPWMATIFSISPHDAVDWILVFLFSFPVIVIDEVLKYFGRRM 1027
                   667899999***********************************************998876 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.4   6.3e-37   1.4e-34       7     245 ..       5     252 ..       2     270 .. 0.87
   2 !  309.6   0.0   3.4e-95   7.7e-93     267     855 ..     247     845 ..     244     852 .. 0.81
   3 ?   -2.1   0.7      0.49   1.1e+02     929     994 ..     964    1029 ..     958    1032 .. 0.81

  Alignments for each domain:
  == domain 1    score: 116.7 bits;  conditional E-value: 6.3e-37
    TIGR01523   7 yfsdikeveaeflgtsltegltqeeavnrlkevgenrleddskvdakkvllrqvlnamivvlllaailsfa......ttdwieg....gvisavivlnvlvglvqeykaektmdslktlaspnahvirssk.seaidskdlvpgdvvllkvgdvvpadlrlve..tknfetdealltgeslpvikdanlvfqkeeevsvgdrlnlaysssivvkgrakgiviktalqseigkiakslrqdsklisrepskrr 245
                  y   +++v  e    +l  gl++ e+ +  k  g n le++ k   ++++l+q  + ++ +ll aa+lsf       ++ w+e      vi +++++n +vg+ qe  ae ++++lk++ s +a  +r++   +++ +++lvpgd+v + vgd  pad+rl +  t  + +de  ltges  v k  +++ + e    + d+ n+ ++ + +  g+a g+v +t++ +eigki  ++ + s+  ++ p +++
  MMETSP1061-20121228|20033_1   5 YKVSVEDVLKEHN-VTLERGLSEAEVSELRKIHGSNELEQEEKTPLWQLVLEQFDDKLVQILLAAALLSFVlaffeeVEHWVEAfvepAVILLILIINAIVGVWQEANAENALEALKQMQSLQAPCLRDGVwHDSMPTEELVPGDIVKISVGDRAPADVRLCKlvTATLRSDEGALTGESETVLKTCDAITSGE---KISDQKNMVFAGTTISGGKAIGVVTATGMATEIGKIQSAVTEASEDAEKTPLNQK 252
                  5566777777776.7899**********************************************99999962222224678765222278999999********************************996379***************************763378899*****************9987654...589*************************************999998888886654 PP

  == domain 2    score: 309.6 bits;  conditional E-value: 3.4e-95
    TIGR01523 267 tplqrklsklavllfci..avllaiivmaaqkf.d.....vdkevaiy....aislalsiipeslvvvlsitmavgakvmvkrrvivrklealealgavtdicsdktgtltqgkmlarrvwiprygtlsvdtsddafnptigtvslledadvdvlkekkdelkekdlpedidsdlfikllktaalanlatvfkddetdewkvkgepteialqvfakkldlgk.....kdllksnefva..........eypfdsevkrmavvyedqqnetytvyakgaverilercsssy...gs..tleepdveliikqveslaaeglrvlalaskvid..kd....dvnitlnrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptnlisdrdeivdsmvmtgsqf..dalseeevddlkvl...plviarcapqtkvkmiealhrrkkfvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfvlqllvenvaevlllvvglvfrdevgksvfplspvevlwiivvtssfpamglglekaapdlmerlphdskvgiftkelivdtlvygiiltvvslasfv 855
                  tpl++kl  +  +l  +   + + + vm  ++f d     v  + +iy    a++l+++ ipe l +v+++ +a+g+k+mvkr+ ivrkl ++e+lg+ t icsdktgtlt  +m+   + +p     ++++           v++ e a        + e+++        +  + ++ + +al+n a++      ++++  gepte al+ + +k+ l       +d+ k++ f +             f  + k m+v+ +++ +    +  kga e +l+rc+s     gs  t+  +d+e + +++  +++  lrvl++a k+    k+    +     + +  es l f++l gi dppr e + a+k + +ag+rv m+tgd   ta aiar+vgi+         e v    +tg++f   ++s+ee   l +    + v +r  p+ k  +++ l    +  amtgdgvnd+p+lkqa +giamgi g++vakea+d++l+ddnfa+i+ a+eegr ++ n++ f+  ++ +n++ev+ + +  ++          l pv++lw+++vt   pa  lg++  +pd+m ++p  ++  ++t  +    +v g++++ +++  fv
  MMETSP1061-20121228|20033_1 247 TPLNQKLDEFGDMLTQVitGICVLVWVMNFNQFfDpvfggV-FKGCIYylkiAVALGVAAIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEALVVPDAEEGAIKEY---------HVTGTEYAPT------HGEIENYT----STTGNLEQMANVCALCNEAAIR--YLEGQYVRTGEPTEAALKCLVEKMGLPGqsapaNDIEKADYFGRliqgsfdkeaTLEFSRDRKSMSVLCKNKATGDRVLLVKGAAELLLDRCTSLMrpdGSvkTMSATDREALTARITDMSKRPLRVLGMAIKTNMppKEelpsQLLNLEEYAGVESGLTFVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGIFED------GESVAGKSFTGAEFfqGSISDEERARLIMQgggSRVFSRTEPRDKQLLVKILRSCGEVPAMTGDGVNDAPALKQASIGIAMGISGTEVAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFIRYMISSNIGEVFSIFLTSAIGCPE-----GLIPVQLLWVNLVTDGPPATALGFNPPDPDVMLKPPRGKDDALITNWVFFRYMVIGLYVGFATVGIFV 845
                  78888888777666543113444455666555423322212.234565455577888999************************************************************9998766666554.........6666666543......23344433....334455678899********98..67899*******************9854122224666776653311111111112344555699*******99999999*************997433365337899************************997642244111133344567889******************************************************977......788999999**99854479*****99987533378***************************************************************************************************9988777766554.....478*******************************************************9988876665 PP

  == domain 3    score: -2.1 bits;  conditional E-value: 0.49
    TIGR01523  929 venkflawaiilaavsvfpvvyipvinddvfkhkyigaewglvivaviayfiyvelyksikrrltk 994 
                   + n +l+ a++ +++  f ++y+p +        +  ++w lv  + +   +  e+ k   rr+ +
  MMETSP1061-20121228|20033_1  964 WVNPYLLLAMASSFILHFMILYVPWMATIFSISPHDAVDWILVFLFSFPVIVIDEVLKYFGRRMNE 1029
                   77999999****************997644444455679999999999999999999988888766 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.2   2.6   5.5e-69   1.3e-66       1     309 [.      23     367 ..      23     405 .. 0.88
   2 !  148.6   0.0   1.9e-46   4.3e-44     359     639 ..     474     793 ..     458     848 .. 0.86

  Alignments for each domain:
  == domain 1    score: 223.2 bits;  conditional E-value: 5.5e-69
    TIGR01647   1 GLsseeakkrlkkyGpneleekkeskllk.FlsflwnPlswvleiAaiiaialen..........weDfviilallllnatigfieeskAgnaveaLkkslapkakvlRdgkwq.eleakelvpGDvvalklGdivpaDvklvegdk..lkvDqaaltGEslpvekklg............diaysgsvvkkGEveavvvatGvntffGkaakLveeaek..esghlqkilskigavlivlilvlvliellvellkrkeslres........lqfalvllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideeli 309
                  GLs++e+++++k++G nele++++++l +  l+++ + l  +l +Aa+++++l+           +++ ++il++l++na +g ++e +A+na+eaLk+   ++a +lRdg w+ +++++elvpGD+v++ +Gd  paDv+l++  +  l+ D+ altGEs  v k  +            +++++g ++  G + +vv+atG+ t +Gk  + v ea++  e + l++ l + g++l+ +i+ ++++++++++ ++ + +  +        l+ a++l va+iP +lp+v++  lA+G+kk+ k++aiv+kl ++E l   +++CsDktGtlt+n+++++  ++
  MMETSP1061-20121228|20033_1  23 GLSEAEVSELRKIHGSNELEQEEKTPLWQlVLEQFDDKLVQILLAAALLSFVLAFfeevehwveaFVEPAVILLILIINAIVGVWQEANAENALEALKQMQSLQAPCLRDGVWHdSMPTEELVPGDIVKISVGDRAPADVRLCKLVTatLRSDEGALTGESETVLKTCDaitsgekisdqkNMVFAGTTISGGKAIGVVTATGMATEIGKIQSAVTEASEdaEKTPLNQKLDEFGDMLTQVITGICVLVWVMNFNQFFDPVFGGvfkgciyyLKIAVALGVAAIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEALVV 367
                  9******************98888877662689********************878889997777777899******************************************8369**********************99987544349***********999876432222222222225799*************************99999887541156789***************************99888777767888888899*****************************************************************987655 PP

  == domain 2    score: 148.6 bits;  conditional E-value: 1.9e-46
    TIGR01647 359 vpfdpvekrteatledeetgkkfkvtkGapqvildlvkekkeieee...........veekveelAerGlRaLgvava....................dekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlgl..gtniltaekllkkkk.edklkseeleelvekadG...FAevfPeHkyeivealqkrghlvgmtGDGvnDaPaLkkAdvGiAva.gAtDAArsaaDivltepGlsviveAikesRkiFqRmksyviYrvaltlrivvflallililkfk.lpvllvvllallnDg 639
                  + f   +k   +  ++++tg+++ ++kGa++++ld +++  + + +           + ++++++ +r lR Lg+a +                      +   +++gl  + DPPr++ + +i+ +++ gv+v m+tGD+ + a  +ar +g+  + + +  ++++ ++  ++++++ee + l+ +  G   F    P  k  +v++l++ g + +mtGDGvnDaPaLk+A++GiA+    t+ A+ aaD++l +  +++iv+Ai e R i+  mk+++ Y ++  +  v+ ++l+ +i   + l ++ ++ + l+ Dg
  MMETSP1061-20121228|20033_1 474 LEFSRDRKSMSVLCKNKATGDRVLLVKGAAELLLDRCTSLMRPDGSvktmsatdreaLTARITDMSKRPLRVLGMAIKtnmppkeelpsqllnleeyaGVESGLTFVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGIfeDGESVAGKSFTGAEFfQGSISDEERARLIMQGGGsrvFSRTEPRDKQLLVKILRSCGEVPAMTGDGVNDAPALKQASIGIAMGiSGTEVAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFIRYMISSNIGEVFSIFLTSAIGCPEgLIPVQLLWVNLVTDG 793
                  567777899999999********************9987655444445567788889*******************999***************9988778889*************************************************9553455666777766651455555577777777666555666669**************************************96367**********************************************98888877766544444555566666666665 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   1.0   9.3e-55   2.1e-52      21     356 ..      10     364 ..       3     380 .. 0.86
   2 !  167.4   0.0   3.3e-52   7.6e-50     400     741 ..     462     827 ..     453     859 .. 0.84
   3 ?   -4.8   1.6       3.7   8.4e+02     258     295 ..     975    1015 ..     972    1016 .. 0.76

  Alignments for each domain:
  == domain 1    score: 175.9 bits;  conditional E-value: 9.3e-55
    TIGR01524  21 etllrkld.sheeGltaaevterlkkyGenevaeekkspalvqllrafnnpfiyvlailagvsylt..........edleavviialmvslsgllrfvqearaeraadalkkmvkntatvlrvinenieaal.eevpidelvpGdviklaaGdlipadvrvia..ardlliaqsaltGeslpvekvaatkeakdkellelenlllmGtnvvsGraqavvlatGsstffGslakavse...dreqtafdkGvksvskllirfmlvmvpvvllin..Glsk...GdwleaalfalavavGl....tpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivlek 356
                  e +l+  + + e+Gl+ aev+e +k +G ne+ +e+k+p + ++l+ f++ ++ +l + a +s++           e +    +i+l++ + ++++ +qea ae+a +alk+m + +a  lr      ++++ + +p +elvpGd++k++ Gd  padvr+ +  +  l   + altGes  v k      +  +++ +++n+++ Gt +  G+a  vv atG +t  G++  av+e   d e+t +++ +++   +l + +  +  +v ++n   +     G  ++  ++ l +av l     pe lp +++  la G+ k+ k+  iv++l +++ +G   ++c+dktGtlt +++v+e 
  MMETSP1061-20121228|20033_1  10 EDVLKEHNvTLERGLSEAEVSELRKIHGSNELEQEEKTPLWQLVLEQFDDKLVQILLAAALLSFVLaffeevehwvEAFVEPAVILLILIINAIVGVWQEANAENALEALKQMQSLQAPCLR------DGVWhDSMPTEELVPGDIVKISVGDRAPADVRLCKlvTATLRSDEGALTGESETVLKTCDAITS-GEKISDQKNMVFAGTTISGGKAIGVVTATGMATEIGKIQSAVTEaseDAEKTPLNQKLDEFGDMLTQVITGICVLVWVMNfnQFFDpvfGGVFKGCIYYLKIAVALgvaaIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEA 364
                  5555555515799***************************************************9999*9**999888888899999999********************************......455427899***********************96522667888999**********99877776.899***********************************999987443667899********99999888765555555541155433337778888887666655422336*****************************************************99886 PP

  == domain 2    score: 167.4 bits;  conditional E-value: 3.3e-52
    TIGR01524 400 rstkarfkkvdeipfdferrrlsvvveeaae.vrrlickGaveelltvathl.reggavvalsesekeelkavteelnrqGlrvvavatkklkasead.......lsked....eeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGi..d....andvllGadi..eelsdeelaaevek...ravfarltplqkerivtllkkeGhtvGflGdGindapalrkadvGisvd.saadiakeasdiillekslmvleegvieGretfgnilkylkmtassnfgnvfsvlvasafipflpmlalhlliqnllydvs.qlalpfdkvdkeflkkprkweakdlgrfllfi 741
                  r +++ f k   + f  +r+ +sv+ +++a  +r l++kGa e ll  +t l r +g+v ++s + +e l a   ++ ++ lrv+ +a k+    +++       l+  +    e+ l+  G+ + +dpp+   + ai+  +k+g+ v ++tGdn+  ++ i ++vGi  d    a+  ++Ga+    ++sdee a+++ +     vf+r  p +k+ +v++l+  G +  + GdG+ndapal++a +Gi++  s +++akea+d+il + ++  +  ++ eGr +++n+  +++   ssn g+vfs++++sa      ++++ ll  nl+ d     al f+  d + + kp + ++  l    +f+
  MMETSP1061-20121228|20033_1 462 RLIQGSFDKEATLEFSRDRKSMSVLCKNKATgDRVLLVKGAAELLLDRCTSLmRPDGSVKTMSATDREALTARITDMSKRPLRVLGMAIKTNMPPKEElpsqllnLE--EyagvESGLTFVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGIfeDgesvAGKSFTGAEFfqGSISDEERARLIMQgggSRVFSRTEPRDKQLLVKILRSCGEVPAMTGDGVNDAPALKQASIGIAMGiSGTEVAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFIRYMISSNIGEVFSIFLTSAIGCPEGLIPVQLLWVNLVTDGPpATALGFNPPDPDVMLKPPRGKDDALITNWVFF 827
                  667899***********************9989*****************8637899*******************************9987555444334432222..12233899**************************************************95422222445578888633479*******998744468*********************************************974779*********************************************************9999***************75267899*****9998888776655544333333 PP

  == domain 3    score: -4.8 bits;  conditional E-value: 3.7
    TIGR01524  258 skllirfmlvmvp...vvllinGlskGdwleaalfalavav 295 
                   s ++++fm++ vp    ++ i  +   dw+  +lf++ v v
  MMETSP1061-20121228|20033_1  975 SSFILHFMILYVPwmaTIFSISPHDAVDWILVFLFSFPVIV 1015
                   778999******93333566677778899999999988765 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.021       4.8     119     176 ..      41      99 ..      13      99 .. 0.81
   2 !  126.9   2.7   6.8e-40   1.5e-37       1     236 [.      93     369 ..      93     398 .. 0.80
   3 !    8.2   0.0    0.0007      0.16     256     295 ..     471     514 ..     457     531 .. 0.84
   4 !   55.1   0.0   4.1e-18   9.3e-16     312     366 ..     574     628 ..     567     630 .. 0.93
   5 !  107.5   0.0   5.1e-34   1.2e-31     363     466 ..     664     773 ..     658     783 .. 0.95

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.021
    TIGR01494 119 vktgsektplqrkldklalifllallllallvfl.lvlielktflkiilralillviai 176
                  +++ ++++ +q  l++++  ++ +ll +all f+ + + e+ ++++++++  ++l i+i
  MMETSP1061-20121228|20033_1  41 LEQEEKTPLWQLVLEQFDDKLVQILLAAALLSFVlAFFEEVEHWVEAFVEPAVILLILI 99 
                  5677778889999*****9999999888876665056678999**99999888888775 PP

  == domain 2    score: 126.9 bits;  conditional E-value: 6.8e-40
    TIGR01494   1 vililvllfallealakekaedalrslkdkelnskkvtvlrege..keisskdlvvGDivlvkkgekvpaDgvl...lsgsaevdessLtGEsnpvekk..............eavfagtinfegtlklkvs.........kiavvvktgs...ektplqrkldklalifllallllallvfllvlielkt.........flkiilralillviaiPiaLpvavtialavgdkrla...ilvrslnaleelgkvdvilsDKTGTLTenkmelkkvvigg 236
                  vil++++++a++ ++++ +ae+al++lk+  ++s ++ +lr+g+  ++ ++++lv+GDiv+++ g++ paD++l   +  ++  de +LtGEs++v+k+              ++vfagt++ +g+++++v+         ki+++v ++s   ektpl++kld+++ +++ ++  +++lv+++ ++++++         +++++ +a++l v+aiP++Lp+++t++la+g+k+++   ++vr+l ++e+lg+++vi+sDKTGTLT+n+m ++++v+ +
  MMETSP1061-20121228|20033_1  93 VILLILIINAIVGVWQEANAENALEALKQ--MQSLQAPCLRDGVwhDSMPTEELVPGDIVKISVGDRAPADVRLcklVTATLRSDEGALTGESETVLKTcdaitsgekisdqkNMVFAGTTISGGKAIGVVTatgmateigKIQSAVTEASedaEKTPLNQKLDEFGDMLTQVITGICVLVWVMNFNQFFDpvfggvfkgCIYYLKIAVALGVAAIPEGLPAVITLCLALGTKKMVkrnAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEALVVPD 369
                  6999*************************..99999999998742256789********************8752226778899************9972222222222222256788999999998888771111111113444444433222799**************************99998754222222222889999*****************************65569*********************************998866 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0007
    TIGR01494 256 lkvlefeserkrmsvivkkpkgk....yvkGapevilervkkle 295
                    +lef+++rk+msv++k++ +     +vkGa e++l+r+++l+
  MMETSP1061-20121228|20033_1 471 EATLEFSRDRKSMSVLCKNKATGdrvlLVKGAAELLLDRCTSLM 514
                  5689**************9876444449************9865 PP

  == domain 4    score: 55.1 bits;  conditional E-value: 4.1e-18
    TIGR01494 312 askeellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglf 366
                   s  +++Gl++++dp+r++v ++i+ ++kag++vim+TGDn+ tA+aia+ +g+f
  MMETSP1061-20121228|20033_1 574 ESGLTFVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGIF 628
                  566689***********************************************98 PP

  == domain 5    score: 107.5 bits;  conditional E-value: 5.1e-34
    TIGR01494 363 lglfarvsPeqKaeivellkkkgevvamiGDGvNDapALkaAdVGiais......AkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsvl 466
                   ++f r++P +K+ +v+ l++ gev am+GDGvNDapALk+A +Gia++      Ak+aad++l+ddn++++v++++eGr++y+++k++i y++++n+ ++++++++s++
  MMETSP1061-20121228|20033_1 664 SRVFSRTEPRDKQLLVKILRSCGEVPAMTGDGVNDAPALKQASIGIAMGisgtevAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFIRYMISSNIGEVFSIFLTSAI 773
                  5789********************************************8777888***************************************************9987 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.6   4.3   1.1e-32   2.6e-30      22     275 ..      82     371 ..      61     388 .. 0.85
   2 !   39.4   0.0   3.4e-13   7.6e-11     359     428 ..     560     629 ..     521     635 .. 0.84
   3 !   80.5   0.1   1.2e-25   2.7e-23     424     517 ..     662     753 ..     651     773 .. 0.88

  Alignments for each domain:
  == domain 1    score: 103.6 bits;  conditional E-value: 1.1e-32
    TIGR01525  22 a..........lllvllllgelLeelakskasealsellelapeealllkeddseeevaveelqvgDivkVkpGekipvD...GeviegesevDesllTGEslpvekkeg............deViaGtvnlegsleikvtkvgedstlaqivklveeaqe..skakiqrladklasyfvplvlaialltflvwlalga.......lk.a.ealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvevlkds 275
                             ++l++l +  ++  + + +a++al++l+++++ +a  l+++    ++++eel +gDivk++ G++ p+D   +++++ +   De +lTGEs +v k+++            + V+aGt+   g+    vt++g+++ + +i + v+ea+e  +k+++++ +d++ + ++ ++  i +l++++ +  ++       +k     l+ ava+ v+a P +L   +++ ++ +++++ k+  +++   ++E+l  +++++ DKTGTLT+ +++v+++ v + +
  MMETSP1061-20121228|20033_1  82 EhwveafvepaVILLILIINAIVGVWQEANAENALEALKQMQSLQAPCLRDGVWHDSMPTEELVPGDIVKISVGDRAPADvrlCKLVTATLRSDEGALTGESETVLKTCDaitsgekisdqkNMVFAGTTISGGKAIGVVTATGMATEIGKIQSAVTEASEdaEKTPLNQKLDEFGDMLTQVITGICVLVWVMNFNQFFdpvfggvFKgCiYYLKIAVALGVAAIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEALVVPDAE 371
                  144455556659**************************************9889**************************7777778888889************99754222222222222579*********************************9753389****************************98776699998874432488999******************************************************************99887644 PP

  == domain 2    score: 39.4 bits;  conditional E-value: 3.4e-13
    TIGR01525 359 leeeeeqgktvvlvavddellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgiid 428
                  l ++  + +  + v +  +++gl  ++D++rpe+++ai+  +k+g +v+++tGDn+++aea+A+++gi++
  MMETSP1061-20121228|20033_1 560 LPSQLLNLEEYAGVESGLTFVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGIFE 629
                  55555555566666666699***********************************************954 PP

  == domain 3    score: 80.5 bits;  conditional E-value: 1.2e-25
    TIGR01525 424 lgiidevvaellPedKlakvkklqeeegkkvamvGDGiNDApALaaAdvGiamg.sgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNl 517
                   g  + v++   P+dK   vk l+ + g++ am GDG+NDApAL++A +Giamg sg++va+eaAD++l +d+ +++++ai+  r++ +++k  +
  MMETSP1061-20121228|20033_1 662 GG--SRVFSRTEPRDKQLLVKILR-SCGEVPAMTGDGVNDAPALKQASIGIAMGiSGTEVAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFI 753
                  45..6899***************9.66778*********************************************************99999755 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.8   0.1   5.2e-40   1.2e-37     133     702 ..      17     632 ..       3     644 .. 0.71
   2 !   51.6   0.0   2.7e-17   6.2e-15     780     954 ..     664     847 ..     634     857 .. 0.78

  Alignments for each domain:
  == domain 1    score: 126.8 bits;  conditional E-value: 5.2e-40
    TIGR01657 133 aagesnGLtkgeiakrkelyGkneieikvks.fleLlveevlkPf....yvfqvfsvilWlld..eyyyya....llilvlsvlsivlsvkeirkqlkelrdmvaks.qsveViRekkee.tiasdelvpgDivlisrleekllpcDav...LlegscivnEsmltGEsvpvlKvpieeeedsdeklqlkekskkhvLfgGTkvlqirpdegdtkvlaiVvrTGFstskGqLvrsilypkprvfk..fykdslkfilfla.vlaligfiyvlielikne.rskkklilrsldii.......tivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgldllgvqglsnaee.................flkevtedssekksetlkalatch..sltkled..klvGDpldlkm...leavgwtlee..edesaleesilavvrtedktkelsiirrfeFssalkrmsvivkteeerkkellafvKGaPEtiaellsk........etvp.sd...ykevlksytreGfRvlAlaske.Lp.kltl.skaqdlsRda.vEsnleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekkk 702
                  +++ ++GL+++e++++++++G+ne+e + k+ + +L +e++   +        ++s +l   +  e ++ a    ++il+++++  +  v ++ ++++ l  + + +  +   +R++ +   + ++elvpgDiv is   +   p+D+    L+ ++   +E  ltGEs  vlK+      +s ek     +++k+++f+GT++       + +k++ +V+ TG  t  G++ +++  + +   k  ++++   f  +l  v+ +i +++ ++++++     ++ ++  ++  +       +  +P +LPa ++++ + + +++ k++    +  ++++ G+  v+c DKTGTLT ++++++++ +  ++e                   +++ t+ +  + ++++++ a c   +++ le+  +  G p + ++   +e++g+  +   +     e+             +++    +eFs   k+msv++k++     + ++ vKGa E + +++          +t+  +d     + +++++++  Rvl++a k+ +p k +l s++ +l+  a vEs l+f+Gl  ++ + +p+    ik  ++a +rv+mitGDn  Ta  +ar+vgi e  +
  MMETSP1061-20121228|20033_1  17 NVTLERGLSEAEVSELRKIHGSNELEQEEKTpLWQLVLEQFDDKLvqilLAAALLSFVLAFFEevEHWVEAfvepAVILLILIINAIVGVWQEANAENALEALKQMQsLQAPCLRDGVWHdSMPTEELVPGDIVKIS--VGDRAPADVRlckLVTATLRSDEGALTGESETVLKTCDA--ITSGEK----ISDQKNMVFAGTTI-------SGGKAIGVVTATGMATEIGKIQSAVTEASEDAEKtpLNQKLDEFGDMLTqVITGICVLVWVMNFNQFFdPVFGGVFKGCIYYLkiavalgVAAIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEALVVPDAEEGaikeyhvtgteyapthgEIENYTSTT-GNLEQMANVCALCNeaAIRYLEGqyVRTGEPTEAALkclVEKMGLPGQSapA--NDIEKADY---FGRLIQGSFDKEATLEFSRDRKSMSVLCKNKATG--DRVLLVKGAAELLLDRCTSlmrpdgsvKTMSaTDreaLTARITDMSKRPLRVLGMAIKTnMPpKEELpSQLLNLEEYAgVESGLTFVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGIFEDGE 632
                  455667********************998873557777766544411113333445444444411456665222246777777777777888888888888776544377889****88626899************..889999997512267899999**************9655..233342....3446789*****97.......3457899**************9999987765544125666677766664255666666666666655423344555555544411111123468****************999888877777779***************************99988888889999999999888655444444444.88889999999997225789***55567*****8752226666666555321..22222211...223334788888999**************99884..4689**********99974222221112222122111334567788999*******995377443332455566543359******************************************************88765 PP

  == domain 2    score: 51.6 bits;  conditional E-value: 2.7e-17
    TIGR01657 780 vkVfARvaPeqKeelvetlkkldytvlmcGDGaNDcgALkqAdvGisLsea..e.AsvaapFtSklasiscVtnvireGRaaLvtslqvFkylalysliqflsvliLylkgs..klgdgQfltidllliavvalllsrskplkkLskerpssn...ll.svylllsvllqfvlvilslvllvfe 954
                  ++Vf R+ P +K+ lv+ l+ ++ + +m GDG ND  ALkqA +Gi++  +  e A  aa  +    + + +++ i eGR+  ++  +  +y+    + + +s+++   +g    l  +Q+l+++l+   + a +l+ ++p   +  ++p  +   l+ +   +  +++++ + +++  + vf+
  MMETSP1061-20121228|20033_1 664 SRVFSRTEPRDKQLLVKILRSCGEVPAMTGDGVNDAPALKQASIGIAMGISgtEvAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFIRYMISSNIGEVFSIFLTSAIGCpeGLIPVQLLWVNLVTDGPPATALGFNPPDPDVMLKPPRGKddaLItNWVFFRYMVIGLYVGFATVGIFVFW 847
                  58*********************************************865511336778999999********************99999*************999999886225778999999999988888888888887777666664321123313444445556666666666666555 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.95   2.2e+02     136     183 ..      28      76 ..      23      83 .. 0.74
   2 !   62.5   8.5   2.9e-20   6.7e-18      15     257 ..      85     367 ..      71     376 .. 0.81
   3 !   26.6   0.0   2.2e-09   4.9e-07     308     364 ..     571     626 ..     562     630 .. 0.90
   4 !   70.5   0.0   1.1e-22   2.5e-20     354     450 ..     653     753 ..     650     781 .. 0.84

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.95
    TIGR01512 136 edstiakivklveeaqsekakt.qrlidrlaekytlvvlliallialvs 183
                  e s + ki    e +q+ek+++ q +++++ +k++ + l++all +++ 
  MMETSP1061-20121228|20033_1  28 EVSELRKIHGSNELEQEEKTPLwQLVLEQFDDKLVQILLAAALLSFVLA 76 
                  5577777777777777777776266789999999999998888877665 PP

  == domain 2    score: 62.5 bits;  conditional E-value: 2.9e-20
    TIGR01512  15 vgellegalllllfslgetLeelaskrakealkaLlelaPdtarrleeeV.....aveelkvgdvvvVkkGervPvD...GevlsgessldesalTGEsvpveka............kgdevlaGainldgvlkievtkeaedstiakivklveeaqs..ekaktqrlidrlaekytlvvlliallialvs..................sllvalvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvsdvea 257
                  v++ +e a++ll++ +  ++  + ++ a++al+aL++++  +a  l+  V     ++eel +gd+v ++ G+r P+D   +++++ +   de alTGEs +v k             +++ v+aG++  +g     vt++  ++ i ki + v+ea++  ek+++++ +d++++ +t v+  i +l++++                   +l +a++l v+a P +L + +++ l+ +  +  ++  +++    +e+l+ ++ +  DKTGTLT+++++v+++++
  MMETSP1061-20121228|20033_1  85 VEAFVEPAVILLILIINAIVGVWQEANAENALEALKQMQSLQAPCLRDGVwhdsmPTEELVPGDIVKISVGDRAPADvrlCKLVTATLRSDEGALTGESETVLKTcdaitsgekisdQKNMVFAGTTISGGKAIGVVTATGMATEIGKIQSAVTEASEdaEKTPLNQKLDEFGDMLTQVITGICVLVWVMNfnqffdpvfggvfkgciyYLKIAVALGVAAIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEALVV 367
                  6788999***********************************998876543333389********************5555677788888**********9976422222222221144569999988888888889******************975338999***********************997522111111111111111123356778899*********************************************************998765 PP

  == domain 3    score: 26.6 bits;  conditional E-value: 2.2e-09
    TIGR01512 308 vlvaldekllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelG 364
                  + v    +++gl  ++D +r+++ +ai+  +k+gv +++++tGD++ +ae++a+ +G
  MMETSP1061-20121228|20033_1 571 AGVESGLTFVGLTGIKDPPRPEVRSAIKCCQKAGV-RVIMITGDNKTTAEAIARDVG 626
                  5566677899************************7.88******************9 PP

  == domain 4    score: 70.5 bits;  conditional E-value: 1.1e-22
    TIGR01512 354 aaaekvaeelGdevhaellPedKveivkelkev....amvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnv 450
                  + a+ + +  G  v     P dK   vk l++     am GDG+NDapaL++A +giamG sg++va e+AD++l +d+ ++++ ai+ +r++ +++k+ +
  MMETSP1061-20121228|20033_1 653 ERARLIMQGGGSRVFSRTEPRDKQLLVKILRSCgevpAMTGDGVNDAPALKQASIGIAMGISGTEVAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFI 753
                  5677777888999**********777777665322249*****************************************************9988887655 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   8.0   1.9e-20   4.3e-18      25     284 ..      70     367 ..      53     379 .. 0.80
   2 !   31.9   0.0   6.1e-11   1.4e-08     360     408 ..     579     627 ..     559     637 .. 0.90
   3 !   62.0   0.0   4.6e-20   1.1e-17     398     500 ..     654     760 ..     648     778 .. 0.86

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 1.9e-20
    TIGR01511  25 algttvaylySlvaleafFdelallivllllGrlleelakskaskalekLaklkpeeatll.....kkdvdveelqvgdilkvkpgekipvD...GvvveGesevdeslltGEslpvkkkvg............deviaGtvngegsllvkvtkvgedtllaqivklveeAqq..skakiqrlAdkvaslfvpvviaiavltfvi................WllalevavtvliiaCPcalGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevtevke 284
                   l+  +a++  + +    F e a+++ +l++  ++      +a++ale+L +++  +a  l     ++ ++ eel +gdi+k+  g++ p+D   + +v+ + + de +ltGEs  v k+++            + v+aGt+ + g+ +  vt++g +t + +i + v+eA +  +k+++++  d+   +++ v+  i vl +v+                 ++ l++av+  + a P +l   i l ++ +t ++ k+  ++++  ++e++   ++++ DKTGTLT+ +++v +  +
  MMETSP1061-20121228|20033_1  70 LLSFVLAFFEEVEHWVEAFVEPAVILLILIINAIVGVWQEANAENALEALKQMQSLQAPCLrdgvwHDSMPTEELVPGDIVKISVGDRAPADvrlCKLVTATLRSDEGALTGESETVLKTCDaitsgekisdqkNMVFAGTTISGGKAIGVVTATGMATEIGKIQSAVTEASEdaEKTPLNQKLDEFGDMLTQVITGICVLVWVMnfnqffdpvfggvfkgCIYYLKIAVALGVAAIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEALVV 367
                  46778899999999999999999999999999999888888888888888888888887771111246789*********************5555678888899***********998764222222222222569**********************************7533799999999999999999998888888776222211111111111134567899999999*******99***********************************************9987655 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 6.1e-11
    TIGR01511 360 laavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgi 408
                   ++++ ++d ++pe++++i+  +k+g++v+++tGDn+++a+a+A+ +gi
  MMETSP1061-20121228|20033_1 579 FVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGI 627
                  5778899*****************************************9 PP

  == domain 3    score: 62.0 bits;  conditional E-value: 4.6e-20
    TIGR01511 398 aakavAkelgievlaevlPedKaakvkelqe..kkvamvGDGiNDapaLaaadvgiaig.agtdvaieaadvvllnd.lkdvataielsrktlkkikqNllwalgYN 500
                   a+ + +  g  v++   P+dK  +vk l++  ++ am GDG+NDapaL +a +gia+g +gt+va+eaad++l +d  + +++aie  r  ++++k  + + +  N
  MMETSP1061-20121228|20033_1 654 RARLIMQGGGSRVFSRTEPRDKQLLVKILRScgEVPAMTGDGVNDAPALKQASIGIAMGiSGTEVAKEAADMILADDnFATIVSAIEEGRSIYSNMKAFIRYMISSN 760
                  566677777889***************999755788**********************868*************9753899***************98766666555 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   4.4   1.1e-13   2.6e-11      67     323 ..      92     367 ..      61     384 .. 0.71
   2 !   19.7   0.0   1.8e-07   4.1e-05     438     485 ..     580     627 ..     572     633 .. 0.90
   3 !   56.7   0.0   1.1e-18   2.5e-16     488     589 ..     666     768 ..     653     785 .. 0.91

  Alignments for each domain:
  == domain 1    score: 40.2 bits;  conditional E-value: 1.1e-13
    TIGR01497  67 aivtgilfitvlfanfaeavaeGrgkaqadalkktkketlakllskdgaikkvpadelkkGdvvlveaGdvipadGev...ieGvasvdesaitGesapvlk.....esGgdfas....vtGGtrivsdwlvvevtadpGesfldrmialveGae..rrktpneialtvllvaltlvfllvvatlypl...........aayagvkisvsvlvallvalipttiGGllsaiGiaGmdrvarfnviatsGraveaaGdvdtlvldktGtitlGnrlaeefipv 323
                  a++  il i  +   + ea ae       +alk++++   a  l++    +++p++el  Gd+v +  Gd  pad  +   ++ +   de a+tGes  vlk      sG  ++     v  Gt i   + +  vta+   + + ++ + v  a+   +ktp +  l  +   lt v+  + + ++++            ++ g    + + val va ip  +  +++     G +++++ n i     +ve+ G   ++  dktGt+t  + +  e + v
  MMETSP1061-20121228|20033_1  92 AVILLILIINAIVGVWQEANAEN----ALEALKQMQS-LQAPCLRDGVWHDSMPTEELVPGDIVKISVGDRAPADVRLcklVTATLRSDEGALTGESETVLKtcdaiTSGEKISDqknmVFAGTTISGGKAIGVVTATGMATEIGKIQSAVTEASedAEKTPLNQKLDEFGDMLTQVITGICVLVWVMnfnqffdpvfgGVFKGCIYYLKIAVALGVAAIPEGLPAVITLCLALGTKKMVKRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQ-MVVEALVV 367
                  45555555666666666666554....4567887765.458899999999*************************8761115556668*************944433356555422333889**9999999999999999*******988877752258***988887655555544433333333321111122111224566677899***************999999999***********************************9754.44444444 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.8e-07
    TIGR01497 438 yGviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGv 485
                  +G+  +kd  ++ ++  ++  +k G++ im+tGdn+ ta +ia++ G+
  MMETSP1061-20121228|20033_1 580 VGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGI 627
                  67788999999999999****************************997 PP

  == domain 3    score: 56.7 bits;  conditional E-value: 1.1e-18
    TIGR01497 488 fiaeatpedkievikkeqaeGklvamtGdGtndapalaqadvgvamn.sGtqaakeaanmvdldsdptklievveiGkqllitrGalttfsiandvakyfaii 589
                   ++ ++p dk  ++k  ++ G + amtGdG ndapal qa +g+am  sGt+ akeaa+m+  d + + ++  +e G+ +     a+  + i+ ++   f+i 
  MMETSP1061-20121228|20033_1 666 VFSRTEPRDKQLLVKILRSCGEVPAMTGDGVNDAPALKQASIGIAMGiSGTEVAKEAADMILADDNFATIVSAIEEGRSIYSNMKAFIRYMISSNIGEVFSIF 768
                  567889****************************************659************************************************999985 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0   0.00037     0.083      21     126 ..      53     166 ..      46     212 .. 0.67
   2 ?   -0.9   0.0      0.23        52     202     270 ..     202     274 ..     181     278 .. 0.76
   3 !   53.6   0.1   7.9e-18   1.8e-15     343     667 ..     327     623 ..     318     635 .. 0.76
   4 !   15.1   0.0   3.3e-06   0.00074     750     843 ..     668     761 ..     662     775 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00037
    TIGR01652  21 lfeqfkrvaniyFLvvallqavpal..svtnrgtsivpLavvllvtaiKeaieDirrrksDkevNn.kkvevlee.....sakfkeikwkdlkVGdivkvkkdeeiPaDlllls 126
                  ++eqf        L  all++v a+  +v++ +  +v  av+ll+ +i  ++  ++ +++++++   k+++ l+           +++  +l  Gdivk+  +++ PaD+ l +
  MMETSP1061-20121228|20033_1  53 VLEQFDDKLVQILLAAALLSFVLAFfeEVEHWVEAFVEPAVILLILIINAIVGVWQEANAENALEAlKQMQSLQApclrdGVWHDSMPTEELVPGDIVKISVGDRAPADVRLCK 166
                  6677777777777888888888776445677778888888888888888888888888887776551333444432222134456778999******************97754 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.23
    TIGR01652 202 vdnvllrgctlrntkwvlgvVvytGhdt...klmkNatka..psKrskiekelnlliiilfllllvlclissva 270
                   +n++++g+t+     ++gvV  tG  t   k++   t+a  +  ++ ++++l+    +l  ++  +c++  v+
  MMETSP1061-20121228|20033_1 202 QKNMVFAGTTISG-GKAIGVVTATGMATeigKIQSAVTEAseDAEKTPLNQKLDEFGDMLTQVITGICVLVWVM 274
                  469999****988.6789*******9993334444445554467888899999999999999999999887765 PP

  == domain 3    score: 53.6 bits;  conditional E-value: 7.9e-18
    TIGR01652 343 dtpasvrtsnlneeLGqveyifSDKTGTLTqNkmefkkcsiagvsygkkleevkdalrkrkgskveeeeelleelkevtfvdeklvkklktkeeeaelieeflkaLAlChtvvpevedddeeeltyqaeSPDEaAlVkaardlGfsllertkksisllieerg..eekeyeiLnvleFnSsrKRmsvivrlpdd.ellLlcKGADsvifkrlse..........esekvlektkehlekyaseGlRTLviarrelseeeYeewnekyeeAstalkdreekleevaeliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigy 667
                  +++a vr +   e LG    i SDKTGTLT+N+m  + + +   + g          ++ + +   +e     +             ++++ ++++  +e++ ++ AlC+       +      + ++  P EaAl    +++G+   +   + i+   +  g   + +++    leF+ +rK msv+++++ +   +Ll+KGA   +++r  +           s + +e+++ ++ ++++  lR L +a ++                +  l  +  +lee    +E  L+ +g T+i D    +V+++i+  ++Ag+++ ++TGD   TA +i+ 
  MMETSP1061-20121228|20033_1 327 KRNAIVRKLPSVETLGCCTVICSDKTGTLTTNQMVVEALVVPDAEEGAI--------KEYHVT--GTE--YAPTH-----------GEIENYTSTTGNLEQMANVCALCNEAAIRYLEG----QYVRTGEPTEAALKCLVEKMGLPGQSAPANDIE-KADYFGrlIQGSFDKEATLEFSRDRKSMSVLCKNKATgDRVLLVKGAAELLLDRCTSlmrpdgsvktMSATDREALTARITDMSKRPLRVLGMAIKTNMP------------PKEELPSQLLNLEEY-AGVESGLTFVGLTGIKDPPRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIAR 623
                  567889999999**********************999888765443322........222221..111..11111...........23344556677788999999*****99998444....4678999***************99999999777.33333356899***********************9988999*************9986656554443233344555666777777777777777654222............233344444455555.569**********************************************9986 PP

  == domain 4    score: 15.1 bits;  conditional E-value: 3.3e-06
    TIGR01652 750 CRvsPsqKaavvklvkkslskvtlaigdGaNDVsmiqeAdvGv..GisGkEGkqAvmasDfaigqFrfLekLl.LvHGrwsYkRisklilyffyknl 843
                   R  P  K  +vk++++   +v    gdG ND   +++A +G+  GisG+E   A  a+D+ ++  +f + +  +  Gr  Y  +   i y++  n+
  MMETSP1061-20121228|20033_1 668 SRTEPRDKQLLVKILRSC-GEVPAMTGDGVNDAPALKQASIGIamGISGTE--VAKEAADMILADDNFATIVSaIEEGRSIYSNMKAFIRYMISSNI 761
                  6999***********996.6777888****************777999999..68999**9999888877664156899999999999999988886 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.071        16      19      51 ..     591     623 ..     589     629 .. 0.84
   2 !   18.0   0.4   1.6e-06   0.00037     209     248 ..     691     731 ..     687     739 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.071
    TIGR00099  19 petkealaklrekGikvvlaTGRsykevkeilk 51 
                  pe+++a++  ++ G++v+  TG ++  ++ i +
  MMETSP1061-20121228|20033_1 591 PEVRSAIKCCQKAGVRVIMITGDNKTTAEAIAR 623
                  8899******************88777776665 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 1.6e-06
    TIGR00099 209 aiGDseNDieMleaagvgvamg.naneelkaladyvtdsnd 248
                  + GD+ ND++ l+ a++g+amg +++e +k++ad++ ++ +
  MMETSP1061-20121228|20033_1 691 MTGDGVNDAPALKQASIGIAMGiSGTEVAKEAADMILADDN 731
                  67*******************94567888999999987744 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0       2.2     5e+02       3      25 ..     346     368 ..     345     386 .. 0.73
   2 ?   -3.9   0.0       9.6   2.2e+03      26      60 ..     485     519 ..     479     520 .. 0.79
   3 !    6.5   0.0    0.0061       1.4      23      57 ..     593     627 ..     589     640 .. 0.83
   4 !   11.2   0.0   0.00024     0.054     167     207 ..     690     731 ..     651     739 .. 0.83

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 2.2
    TIGR01487   3 lvavDiDgTltdknrlislraie 25 
                  ++ +D  gTlt ++++++  ++ 
  MMETSP1061-20121228|20033_1 346 VICSDKTGTLTTNQMVVEALVVP 368
                  5889999******9999887764 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 9.6
    TIGR01487  26 airklekkGikvvlvtGnevkfvealavligvsga 60 
                   + k +  G +v+lv G    +++  + l++++g+
  MMETSP1061-20121228|20033_1 485 VLCKNKATGDRVLLVKGAAELLLDRCTSLMRPDGS 519
                  56677778999999999999999999999888876 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0061
    TIGR01487  23 aieairklekkGikvvlvtGnevkfvealavligv 57 
                  +  ai+  +k G++v+++tG  +  +ea+a  +g+
  MMETSP1061-20121228|20033_1 593 VRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGI 627
                  667999********************999865554 PP

  == domain 4    score: 11.2 bits;  conditional E-value: 0.00024
    TIGR01487 167 aaiGDsenDldlFrvagfkvava.nAddelKeiaDlvtenes 207
                  a+ GD+ nD ++ ++a +++a++   ++  Ke+aD++   ++
  MMETSP1061-20121228|20033_1 690 AMTGDGVNDAPALKQASIGIAMGiSGTEVAKEAADMILADDN 731
                  678*******************93457888******977665 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       6.6   1.5e+03      80     104 ..     484     508 ..     456     511 .. 0.74
   2 !   17.8   0.0   2.4e-06   0.00056      74     176 ..     589     704 ..     555     705 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 6.6
    TIGR01488  80 elikwlkekGiklvivSggldflve 104
                   ++ + k+ G+++++v g++++l++
  MMETSP1061-20121228|20033_1 484 SVLCKNKATGDRVLLVKGAAELLLD 508
                  4444579999999999999999886 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 2.4e-06
    TIGR01488  74 irpgarelikwlkekGiklvivSggldflveklaeklgidk....vfanelelddnGlltgrieg.e..............vnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlpllkl 176
                  +rp +r +ik ++++G++++ ++g ++   e++a+  gi +    v +  ++  +   + g i++ e              ++++ ++K++ +k +l+  +e     ++ GD+vnD p+lk 
  MMETSP1061-20121228|20033_1 589 PRPEVRSAIKCCQKAGVRVIMITGDNKTTAEAIARDVGIFEdgesVAGKSFTGAE--FFQGSISDeErarlimqgggsrvfSRTEPRDKQLLVK-ILRSCGEV---PAMTGDGVNDAPALKQ 704
                  4599***********************************9989974444444322..566666663366677777789****************.77777773...379**********996 PP

>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       6.2   1.4e+03     126     146 ..     166     186 ..     158     204 .. 0.78
   2 ?   -0.3   0.0      0.62   1.4e+02      93     123 ..     596     626 ..     588     661 .. 0.70
   3 !   16.4   0.0     5e-06    0.0011     172     217 ..     690     737 ..     662     739 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 6.2
    TIGR00338 126 avfaNrLevedgkltGkvege 146
                   +++ +L+ ++g+ltG+ e+ 
  MMETSP1061-20121228|20033_1 166 KLVTATLRSDEGALTGESETV 186
                  56677899999*****98874 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.62
    TIGR00338  93 lvkkLkekgykvaviSGgFdlvaeklkekLg 123
                   +k  +++g++v++i G  ++ ae ++   g
  MMETSP1061-20121228|20033_1 596 AIKCCQKAGVRVIMITGDNKTTAEAIARDVG 626
                  5666777777777777777777777665544 PP

  == domain 3    score: 16.4 bits;  conditional E-value: 5e-06
    TIGR00338 172 vavGDGanDlsmikaAglgiaf..nakpvlkekadiviekkdltdile 217
                   + GDG nD +++k+A +gia    + +v ke+ad+ + + +++ i++
  MMETSP1061-20121228|20033_1 690 AMTGDGVNDAPALKQASIGIAMgiSGTEVAKEAADMILADDNFATIVS 737
                  589*****************9733689*************99999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1044 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 1.34u 0.14s 00:00:01.48 Elapsed: 00:00:01.10
# Mc/sec: 1252.70
//
Query:       MMETSP1061-20121228|20065_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 2898.48
//
Query:       MMETSP1061-20121228|20063_1  [L=521]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (521 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 2292.21
//
Query:       MMETSP1061-20121228|20072_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 596.40
//
Query:       MMETSP1061-20121228|20084_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 449.96
//
Query:       MMETSP1061-20121228|20098_1  [L=1004]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.63
# Mc/sec: 2103.45
//
Query:       MMETSP1061-20121228|20107_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.35
# Mc/sec: 1549.93
//
Query:       MMETSP1061-20121228|20112_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-06   25.6   0.0    3.2e-06   24.8   0.0    1.6  1  TIGR00011 YbaK_EbsC: YbaK/EbsC protein


Domain annotation for each model (and alignments):
>> TIGR00011  YbaK_EbsC: YbaK/EbsC protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   7.9e-10   3.2e-06      82     145 ..     139     202 ..      72     209 .. 0.92

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 7.9e-10
    TIGR00011  82 midlkdaekvtGYvrGGisPlGqkkklptyidesakqletilvsaGkrGlqielapedllklld 145
                  +++++d +++tGY+   ++PlG  +++p+++   +++l + ++ +G+  l++ l++++ ++ ++
  MMETSP1061-20121228|20112_1 139 VAEPEDNDRITGYKFNSVTPLGLNEEVPIVLSSAVSDLGYFWMGGGHVHLKLGLSASEFATKVK 202
                  6789999*************************************************99887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1473.88
//
Query:       MMETSP1061-20121228|20125_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 200.85
//
Query:       MMETSP1061-20121228|20103_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       227  (0.0553389); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2384.91
//
Query:       MMETSP1061-20121228|20143_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.4   0.0      0.032   12.1   0.0    1.1  1  TIGR01428 HAD_type_II: haloacid dehalogenase, type II


Domain annotation for each model (and alignments):
>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.9e-06     0.032     139     170 ..       3      34 ..       2      37 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.9e-06
    TIGR01428 139 sadavraYKPapkvYelalealgvkpeevllv 170
                  +ad++raYK++  +Y+ a ++ + ++ + llv
  MMETSP1061-20121228|20143_1   3 TADKLRAYKTRTSAYKTAGNSTRQQKGRLLLV 34 
                  79****************99999999888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 299.98
//
Query:       MMETSP1061-20121228|20144_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 324.47
//
Query:       MMETSP1061-20121228|20139_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0099   14.0   0.0       0.11   10.7   0.1    2.2  2  TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI


Domain annotation for each model (and alignments):
>> TIGR03142  cytochro_ccmI: cytochrome c-type biogenesis protein CcmI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.034   1.4e+02      67     108 ..      60     107 ..      46     112 .. 0.59
   2 !   10.7   0.1   2.6e-05      0.11      10      60 ..     130     183 ..     125     187 .. 0.65

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.034
    TIGR03142  67 aElerrLLadakeaeeeaas......qakrssrlaalvlvvllpvlal 108
                  +  + +LL++++++++++        + +r + +++ +++ +lp++++
  MMETSP1061-20121228|20139_1  60 RHSSSSLLMATEDNPKSSGGlpfwldPGTRGGAVVLSLILFILPLVGY 107
                  555667777777777776655565533344444444444555555544 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 2.6e-05
    TIGR03142  10 tlvalllvllPllrakrak...atadrdelnlavYrdrLaELerdeaeglldea 60 
                  t+va+ll + + + + ++k    +++ ++++ av ++rL+EL+ de + l++e 
  MMETSP1061-20121228|20139_1 130 TAVATLLWVSTYIFRVATKdmtYAKQLKDYENAVIQKRLEELDDDEIQALVEEI 183
                  4444444444443333333232345556999***************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      166  (0.0404681); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 954.38
//
Query:       MMETSP1061-20121228|20137_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-36  122.8   0.2    3.1e-36  122.5   0.2    1.0  1  TIGR03634 arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
    1.6e-16   58.5   0.5      2e-16   58.3   0.4    1.0  1  TIGR03690 20S_bact_beta: proteasome, beta subunit
    1.8e-10   38.5   0.0      8e-10   36.4   0.0    1.9  2  TIGR03633 arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
    7.3e-05   20.4   0.0    0.00011   19.8   0.0    1.3  1  TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit


Domain annotation for each model (and alignments):
>> TIGR03634  arc_protsome_B: proteasome endopeptidase complex, archaeal, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.5   0.2   3.1e-39   3.1e-36       1     184 [.      26     209 ..      26     210 .. 0.98

  Alignments for each domain:
  == domain 1    score: 122.5 bits;  conditional E-value: 3.1e-39
    TIGR03634   1 gtTtvGikvkdgvvlAadkraslgnlvasknvkKvfkiddkialtiaGsvgdaqslvrllkaeaklyelrrkkkisvkalatllsnllksskflpflvqllvgGvde.egpklyslDplGsiiedkytatGsGspvalgvLedeYeedlsleeakklavkaiksaieRDvasGdgidvvvitkdg 184
                  gtT++ +  + gvv+ ad+r s g++va++  +K+++i+++i +  +Gs +d q+l +++   ++  +l ++++ +vk++a+l+  l++++k     + ++v+G d  eg ++y++   Gs+++  +++ GsGs +  g+L++eY+++++ +ea +la ka + a++RD  sG  i+ v ++ +g
  MMETSP1061-20121228|20137_1  26 GTTILAVPYEGGVVVCADSRTSTGTYVANRVSDKLVQISEQIYVCRSGSAADTQALSDYVMYYLEQWSLDTGRQPTVKTAAHLMRRLIYNNKD-RLSAGVIVAGWDPvEGGSIYTITLGGSCLKLPFATGGSGSIFISGLLDSEYRHGMTKDEARTLAKKACSHAMARDGSSGGVIRTVAVDASG 209
                  89*****************************************************************************************98.8899********9999*********************************************************************999887 PP

>> TIGR03690  20S_bact_beta: proteasome, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.3   0.4   1.9e-19     2e-16       2     183 ..      23     198 ..      22     213 .. 0.92

  Alignments for each domain:
  == domain 1    score: 58.3 bits;  conditional E-value: 1.9e-19
    TIGR03690   2 aphgttivalaykgGvllaGdrratqGnliasrdvekvfkadeysavgiaGtaglavelvklfqvelehyekieGvplslegkanrlaamvrsnlaaalqGlavvpllvGydleaekGrifsydvvggkeeeeeyesvGsGsvfakgalkklykedlseedavrvavealydaadddsatGG 183
                  ++ gtti+a+ y+gGv++  d r+++G+ +a+r  +k+ +  e   v  +G+a+ +  l       le +    G++ ++++ a  +  ++ +n      G++    ++G+d   e G i++    gg+  +  +++ GsGs+f  g l   y++++++++a ++a +a   a   d ++GG
  MMETSP1061-20121228|20137_1  23 VSTGTTILAVPYEGGVVVCADSRTSTGTYVANRVSDKLVQISEQIYVCRSGSAADTQALSDYVMYYLEQWSLDTGRQPTVKTAAHLMRRLIYNNKDRLSAGVI----VAGWDPV-EGGSIYTIT-LGGSCLKLPFATGGSGSIFISGLLDSEYRHGMTKDEARTLAKKACSHAMARDGSSGG 198
                  688*********************************************************99999********************99*****99998888875....59***76.568998765.5778889****************************************9999999998 PP

>> TIGR03633  arc_protsome_A: proteasome endopeptidase complex, archaeal, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.94   9.7e+02     116     129 ..       5      18 ..       4      19 .. 0.81
   2 !   36.4   0.0   7.8e-13     8e-10      26     199 ..      23     193 ..      20     213 .. 0.86

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.94
    TIGR03633 116 qqytqvGGvrPfGv 129
                  q    +GG  P+G+
  MMETSP1061-20121228|20137_1   5 QVLHEHGGNNPYGL 18 
                  556689******96 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 7.8e-13
    TIGR03633  26 vkrgttavGiktkegvvlivdkri.tsklleaesiekifkiDdhvgaataGlvaDarvlidrarveaqvnrltYdepievevlakkvadlkqqytqvGGvrPfGvalliaGvddk.earlfetdPsGalleykavaiGagrekvlellekeykedlsldeaielalkalakaleee 199
                  v  gtt + + ++ gvv+ +d r+ t   + ++  +k+ +i +++ ++ +G +aD+++l d+      +  l  + + +v++ a  +  l+ +             +++aG d   +  +++   +G +l+   ++ G+g+  +  ll++ey++ ++ dea +la ka ++a+ ++
  MMETSP1061-20121228|20137_1  23 VSTGTTILAVPYEGGVVVCADSRTsTGTYVANRVSDKLVQISEQIYVCRSGSAADTQALSDYVMYYLEQWSLDTGRQPTVKTAAHLMRRLIYN--NK---DRLSAGVIVAGWDPVeGGSIYTITLGGSCLKLPFATGGSGSIFISGLLDSEYRHGMTKDEARTLAKKACSHAMARD 193
                  7789*****************99725678999999*******************************999999999999998877776655433..33...2356789******974789*************************************************99988644 PP

>> TIGR03692  ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-07   0.00011       1      70 [.      27      95 ..      27     129 .. 0.88

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.1e-07
    TIGR03692  1 ttilavrkngkvviagdGqvtlgetvlkenarkvrrlyegkvlaGfaGstadaltLferfeekleeykgn 70
                 ttilav  +g vv+ +d + + g+ v  + + k+ ++ e ++ +  +Gs+ad+ +L + +   le+ + +
  MMETSP1061-20121228|20137_1 27 TTILAVPYEGGVVVCADSRTSTGTYVANRVSDKLVQISE-QIYVCRSGSAADTQALSDYVMYYLEQWSLD 95
                 9**********************************9975.799999************999999887654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1314.15
//
Query:       MMETSP1061-20121228|20207_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1385.89
//
Query:       MMETSP1061-20121228|20206_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2272.10
//
Query:       MMETSP1061-20121228|20227_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.1e-102  339.0  15.5   8.9e-102  338.7  10.8    1.0  1  TIGR00378 cax: calcium/proton exchanger
    3.7e-94  313.4  13.2    4.7e-94  313.1   9.2    1.0  1  TIGR00846 caca2: calcium/proton exchanger
    2.7e-17   60.7  13.4    3.7e-17   60.2   9.3    1.1  1  TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
  ------ inclusion threshold ------
          3    3.2  11.7        1.3    4.4   1.9    2.2  2  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00378  cax: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.7  10.8  8.7e-105  8.9e-102       1     349 []     158     506 ..     158     506 .. 0.96

  Alignments for each domain:
  == domain 1    score: 338.7 bits;  conditional E-value: 8.7e-105
    TIGR00378   1 llvfvPlsliasllqlsetvvfllaflaiiplaaflgrateelavvaGpriGGllnatfGnavelivslialkeGlveivkasltGsvlgnlllvlGlafflGGlkykeqefnqlaarlnssllalavvalliPaal.evlsvGveeakllnlsvgvsivlilvyvlalyfklgthralyev.qeaeqtevmeeiedePehslsvkvatvvllavtvvvavisellvgtlesvveslGlsklfiGvivvpivGnaaehatavlvalkdkmdlalevavGsslqialfvaPvlvivgilidvpmdlnfslfelvallvavllvnaissdGesnwleGvlllaayvivalaff 349
                  ll f P++l+++ l+++   +f l+fl+++pla++lg  tee a    + +GGllna+fGnave++v++ al +  +++v+as++Gs+++nlllvlG +ff+GGl y eq fn l+a    +llal+ +a+++P+ + e++   ve+  +l +s+  +  ++l yv  l+f+l th++  e  ++ e + v ee +++ e+++ +++a+  l  +t  ++v s++lv++++  + + G+s++f+G+i++pivGna eh+tav va+k+kmdlal+va+Gs  qialfv Pv vi g++ ++pm+lnf ++e+   +++++ v      G+snwl G +l+++y++v ++f+
  MMETSP1061-20121228|20227_1 158 LLLFAPFALASHNLDWGPQWIFWLNFLTMVPLASILGDFTEEAALHTNDVVGGLLNASFGNAVEVVVAIQALLKDEIRVVQASMIGSIFSNLLLVLGCCFFFGGLYYHEQSFNALNAVAGMGLLALSSIAMILPTPFaEYFE--VEDVDVLTISRIAACFMLLSYVQLLIFQLCTHHGSLESpKDSEGSGVGEEDDEDEEPTIPMWMALLGLGMTTASITVFSDYLVESIDGFCIQSGISRTFVGLIILPIVGNAVEHITAVSVAMKNKMDLALGVAIGSCTQIALFVVPVTVIFGWAAGKPMTLNFPVYEITLYIISIFTVSVCLGTGKSNWLLGSVLVTTYIMVGIGFW 506
                  7899*************************************************************************************************************************************66665..79*******************************977751666777787776667778899*************************************************************************************************************************************************95 PP

>> TIGR00846  caca2: calcium/proton exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.1   9.2   4.5e-97   4.7e-94      12     372 .]     151     506 ..     142     506 .. 0.93

  Alignments for each domain:
  == domain 1    score: 313.1 bits;  conditional E-value: 4.5e-97
    TIGR00846  12 laskleilliavplaiilalvgvsqtlvfllallgiiplAavvsrateeLaarlGetlGgllnatvgnavelIisllalkegkvevvrasllgsilsnlllvlGlslllGGiknirveqefdlkaaqvnlallllailslvlPallkaaknseksaevqd.sklelsvgiaivllilYvvfLvfqlvtHrelFeaeeead.sevddevkeept.vlsslsaailLvvativvallaellvstlesvveslglskafiglilipivgnaaEhvtavivalknkldialgvalGSalqiallvvplvvlvawilgieldLnlealelvalvlsvlltaitlqdGrsnyleGavlLalyviialaff 372
                  +++ + +ll++ p a+   ++ +   ++f l++l+++plA++++  tee a ++ + +Ggllna +gnave+++++ al + +++vv+as++gsi+snlllvlG ++++GG+ +   eq+f+  +a + ++ll+l +++++lP+ +    +        d   l++s++ a  +l++Yv  L+fql tH+   e  ++ + s v +e +e+++ ++ +++a++ L ++t  + + +++lv++++    + g+s++f+gli++pivgna Eh+tav va+knk+d+algva+GS +qial+vvp++v+ +w+ g++++Ln+ + e+   ++s++ + + l +G+sn+l G vl++ y+++ + f+
  MMETSP1061-20121228|20227_1 151 IGKPISVLLLFAPFALASHNLDWGPQWIFWLNFLTMVPLASILGDFTEEAALHTNDVVGGLLNASFGNAVEVVVAIQALLKDEIRVVQASMIGSIFSNLLLVLGCCFFFGGLYY--HEQSFNALNAVAGMGLLALSSIAMILPTPFAEYFEV------EDvDVLTISRIAACFMLLSYVQLLIFQLCTHHGSLESPKDSEgSGVGEEDDEDEEpTIPMWMALLGLGMTTASITVFSDYLVESIDGFCIQSGISRTFVGLIILPIVGNAVEHITAVSVAMKNKMDLALGVAIGSCTQIALFVVPVTVIFGWAAGKPMTLNFPVYEITLYIISIFTVSVCLGTGKSNWLLGSVLVTTYIMVGIGFW 506
                  5678999**********************************************************************************************************9..48**************************99877664......3435799*************************988766554414444444444444999*********************************************************************************************************************************************999987 PP

>> TIGR00367  TIGR00367: K+-dependent Na+/Ca+ exchanger homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   9.3   3.6e-20   3.7e-17      37     311 ..     205     500 ..     190     501 .. 0.74

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 3.6e-20
    TIGR00367  37 dlviGvTvvaagtSlPElftsliavliaksdigigtvvGSnifNillvlglcallsreilvltkl.lkrdvsfllvvlillliflldgv...............lesllllvllflyvvylkflvkver.....kqaindtlteeqvdenerqrkqitfllvllivglt..llvvgsrllVdsavqiaetlgiseeiiGltilAaGTSlpeLvvsviaarkglgdlavgsvvGsNifdIlvglglpallatirvkpvavsldalvlvivllllllivvilsialkrw.lglillalYia 311
                  ++v+G  + a  + + E++++++a l+++  ++ + ++GS   N+llvlg c ++   +  +++    ++    +  l l  i ++  +               ++++++ ++l+ yv  l f + +++      + ++ + + e+ de e  +++i + ++ll +g+t   ++v+s  lV+s        gis   +Gl+il +     e +++v++a+k+  dla+g  +Gs +   l++++++ ++     kp+++++ +  + +  + ++ + v l +    w lg +l++ Yi+
  MMETSP1061-20121228|20227_1 205 NDVVGGLLNASFGNAVEVVVAIQALLKDEIRVVQASMIGSIFSNLLLVLGCCFFFGG-LYYHEQSfNALNAVAGMGLLALSSIAMILPTpfaeyfevedvdvltISRIAACFMLLSYVQLLIFQLCTHHgslesPKDSEGSGVGEEDDEDE--EPTIPMWMALLGLGMTtaSITVFSDYLVESIDGFCIQSGISRTFVGLIILPIVGNAVEHITAVSVAMKNKMDLALGVAIGSCTQIALFVVPVTVIFGWAAGKPMTLNFPVYEITLYIISIFTVSVCLGTGKSNWlLGSVLVTTYIM 500
                  5677777777778899************************************99995.544444424455555444444444433333334567776676777777777777777777777776666653332222222333333444444..68888888888887762269*******************************999999**************************999************999999988876554444444444444444555555699999999996 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   1.2    0.0018       1.9     493     548 ..     204     259 ..     186     263 .. 0.88
   2 ?    4.4   1.9    0.0012       1.3    1058    1120 ..     374     436 ..     362     477 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0018
    TIGR00927 493 sedvaGatfmaaGGsapelftsliGvfishsnvGiGtivGsavfnilfviGtcalf 548
                  ++dv G  + a+ G a e+  ++  ++     v   +++Gs   n+l+v+G c +f
  MMETSP1061-20121228|20227_1 204 TNDVVGGLLNASFGNAVEVVVAIQALLKDEIRVVQASMIGSIFSNLLLVLGCCFFF 259
                  68***************************************************988 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0012
    TIGR00927 1058 iamfsylmvwwahqvGetiGiseeimGltilaaGtsipdlitsvivarkGlGdmavsssvGsn 1120
                   i++fs  +v          Gis   +Gl il       + it+v va k   d+a+  ++Gs 
  MMETSP1061-20121228|20227_1  374 ITVFSDYLVESIDGFCIQSGISRTFVGLIILPIVGNAVEHITAVSVAMKNKMDLALGVAIGSC 436 
                   5566666666666666677************998888899*********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.47
# Mc/sec: 1440.65
//
Query:       MMETSP1061-20121228|20268_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 508.16
//
Query:       MMETSP1061-20121228|20264_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-35  120.0   2.3    2.2e-23   80.9   2.2    2.7  2  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    4.2e-11   40.6   0.0    8.2e-11   39.7   0.0    1.4  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    4.2e-06   23.9   0.0    7.1e-06   23.1   0.0    1.3  1  TIGR00536 hemK_fam: methyltransferase, HemK family
      8e-06   24.0   0.1      2e-05   22.7   0.0    1.6  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    9.4e-06   23.0   0.1    1.7e-05   22.1   0.0    1.4  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
    1.3e-05   22.9   0.0    2.5e-05   21.9   0.0    1.4  1  TIGR00537 hemK_rel_arch: putative methylase
    5.9e-05   20.3   0.0    0.00012   19.3   0.0    1.4  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0038   14.4   0.0     0.0068   13.6   0.0    1.4  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
     0.0065   13.7   0.8      0.016   12.4   0.2    1.7  2  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
  ------ inclusion threshold ------
      0.015   12.0   0.0      0.022   11.4   0.0    1.1  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.9   2.2   5.4e-26   2.2e-23      16     213 ..     103     327 ..      89     344 .. 0.65
   2 !   34.9   0.0   5.8e-12   2.4e-09     226     276 ..     376     427 ..     358     434 .. 0.88

  Alignments for each domain:
  == domain 1    score: 80.9 bits;  conditional E-value: 5.4e-26
    TIGR00406  16 lsdaLeeagavgvkiedkkdti............llepdlPdekalvedlkelalfraet..DllkvvipkleaklldlkrnhkseidenekdWeeawkeafhPvkvgerfiivPsWed.......kpe.dede......liimlD..PglAFGtGtHettslClellesldlkd.kkviDvGcGSGiLsiaalklg.aakvvavDiDplavesarkNlelNqvsdllqv 213
                  l ++L+e ga ++ i d                 +  +     ++ +++ ++ a f a    D + ++++       +l r  + +i e +kdW    ++ ++P+ +   f++   W+         +e ++++       +++lD   g+AFGtG H+tt+lCle   +++++    v+D G+GSG+L++aa kl+   ++v+vDiD  av+ a  N++ Nqv  ++ +
  MMETSP1061-20121228|20264_1 103 LCNFLMELGAASTCIVDADRGTtdekaifdefdeTSMTRTAVTTHSWNNCDVSAHFPASVslDWIMEIVQDT-FP--NLPRYNNVTIVE-DKDWVLHVQQSWKPIILPP-FVLRFPWHTdelvaeaLAEkNNNDgevsmdETVELDlqGGIAFGTGEHPTTQLCLEFIHDVVRRPkMLVMDYGAGSGVLGMAACKLEpTTRAVGVDIDVDAVHIANANARTNQVDMKNYL 327
                  567788888888887776554446667666555522233455666777777777777766223333333222.33..333333333333.78**999999999998888.8777778742222111122122221111112344443379****************99998887625689****************945689**********************876644 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 5.8e-12
    TIGR00406 226 aDvivaNilAevikellsqivrLvkegGllilSGileeqaqsvleayeqa.f 276
                   D + aNilA ++++l++ i++L+k+g  l+lSGi+++q++ +l+a +   f
  MMETSP1061-20121228|20264_1 376 YDALAANILAAPLVSLAPYISKLLKPGAPLGLSGIMTSQSEMILNAAYADyF 427
                  69999**************************************987554426 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0     2e-13   8.2e-11      77     152 ..     261     335 ..     255     344 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 2e-13
    TIGR03534  77 veaaleelkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglkeveflksdlleale 152
                    ++++ + +++k+ v+D g+GsG++++a  k  p+++ ++vDi+ +A+++a++Na++++++ ++ + sdl++ ++
  MMETSP1061-20121228|20264_1 261 CLEFIHDVVRRPKMLVMDYGAGSGVLGMAACKLEPTTRAVGVDIDVDAVHIANANARTNQVD-MKNYLSDLVQTIS 335
                  334444445556699***********************************************.********99982 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.7e-08   7.1e-06     112     178 ..     271     334 ..     256     342 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.7e-08
    TIGR00536 112 qeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsnllesl 178
                  ++ +  ++D g GsG  ++a     p     +vDi  da+++a++Na+ +++   ++ + s+l + +
  MMETSP1061-20121228|20264_1 271 RP-KMLVMDYGAGSGVLGMAACKLEPTTRAVGVDIDVDAVHIANANARTNQVD--MKNYLSDLVQTI 334
                  44.57799********************************************9..677777776665 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       7.7   3.2e+03      45      66 ..      44      65 ..      36      80 .. 0.62
   2 !   22.7   0.0   4.9e-08     2e-05      18      81 ..     271     334 ..     262     345 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 7.7
    TIGR02469 45 rvyaierneealelieeNlrrf 66
                 +   i  + ++++++++N+++ 
  MMETSP1061-20121228|20264_1 44 SFSNIAESGKKASSLRSNADDA 65
                 4455666667777777777654 PP

  == domain 2    score: 22.7 bits;  conditional E-value: 4.9e-08
    TIGR02469  18 kkgdvllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdapka 81 
                  ++++ ++D GaG+G +++ a +l p  r ++++ + +a++  ++N+r ++v+ ++ + + ++++
  MMETSP1061-20121228|20264_1 271 RPKMLVMDYGAGSGVLGMAACKLEPTTRAVGVDIDVDAVHIANANARTNQVDMKNYLSDLVQTI 334
                  677899********************************************99999888655544 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   4.2e-08   1.7e-05     120     186 ..     271     335 ..     256     342 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 4.2e-08
    TIGR03533 120 eevkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdlfeale 186
                  +    v+d  +GsG l++aa++  p+++   vDi  da+++a++n ++ +++  ++ + sdl ++++
  MMETSP1061-20121228|20264_1 271 RPKMLVMDYGAGSGVLGMAACKLEPTTRAVGVDIDVDAVHIANANARTNQVD--MKNYLSDLVQTIS 335
                  455569****************************************999876..4566677777665 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0     6e-08   2.5e-05      18      81 ..     270     336 ..     258     358 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6e-08
    TIGR00537  18 lkndd.vleiGaGtGlvairlke..kgkkivatdinPfavkllkenaklnnveldvlesdlfenveg 81 
                  ++++  v++ GaG+G++ +++ +   + + v++di+  av++++ na+ n+v+++   sdl++++ +
  MMETSP1061-20121228|20264_1 270 RRPKMlVMDYGAGSGVLGMAACKlePTTRAVGVDIDVDAVHIANANARTNQVDMKNYLSDLVQTISD 336
                  4566669*********98876541134589********************************99975 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     3e-07   0.00012      28     114 ..     260     339 ..     246     346 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 3e-07
    TIGR01983  28 vRleyikekikkklkknekkleglkvlDvGcGgGllseslarlgae..vtgiDlseelievAklhakkdplkkieyelksveelaeeek 114
                  + le+i++ +++          ++ v+D G+G+G+l  +  +l+ +   +g+D+  +++++A++ a+++++   +y    v++++++++
  MMETSP1061-20121228|20264_1 260 LCLEFIHDVVRR---------PKMLVMDYGAGSGVLGMAACKLEPTtrAVGVDIDVDAVHIANANARTNQVDMKNYLSDLVQTISDSDD 339
                  556666666664.........3688************9999998666699*********************999999999998887755 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.7e-05    0.0068      11      68 ..     267     326 ..     258     350 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.7e-05
    TIGR00091  11 tvegnkkplvleiGcGkGrfliklAkqnpeknflGiEi..ekpivlkainkaeklglkNl 68 
                  +v+ + k lv++ G G+G + ++  k +p+   +G+ i      +++a+++ ++ ++kN 
  MMETSP1061-20121228|20264_1 267 DVVRRPKMLVMDYGAGSGVLGMAACKLEPTTRAVGVDIdvDAVHIANANARTNQVDMKNY 326
                  566678999**************************9985466778999999999999983 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.2     4e-05     0.016      85     143 ..     272     331 ..     257     349 .. 0.78
   2 ?   -1.7   0.0      0.82   3.4e+02     144     165 ..     365     387 ..     353     394 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4e-05
    TIGR03704  85 sarlvvvdlccGsGavgaalaaaldavelhaadidpaavrcarrnladaG..grvyeGdly 143
                  + ++ v+d   GsG +g+a  +   ++    +did  av+ a  n  ++    + y  dl 
  MMETSP1061-20121228|20264_1 272 P-KMLVMDYGAGSGVLGMAACKLEPTTRAVGVDIDVDAVHIANANARTNQvdMKNYLSDLV 331
                  3.5799***********************************99987654300344555555 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.82
    TIGR03704 144 ealptelrGrv.dillanvpyvp 165
                  e+lp++l G + d l+an+   p
  MMETSP1061-20121228|20264_1 365 ESLPADLNGPIyDALAANILAAP 387
                  789******98799999986555 PP

>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   5.4e-05     0.022     294     351 ..     273     332 ..     257     343 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.4e-05
    TIGR00479 294 eekvvDaycGvGtftlplAk..qaksvvgvevvkesvekakrnAelngianveflagele 351
                  + +v+D  +G G +++   k     ++vgv++  ++v+ a+ nA+ n++   ++l + ++
  MMETSP1061-20121228|20264_1 273 KMLVMDYGAGSGVLGMAACKlePTTRAVGVDIDVDAVHIANANARTNQVDMKNYLSDLVQ 332
                  567899999999999988763257899*********************999888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2126.49
//
Query:       MMETSP1061-20121228|20288_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-11   42.0   0.0    2.1e-09   35.3   0.0    3.1  2  TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00675  dcm: DNA (cytosine-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.9   0.0    0.0073        30       2      19 ..      43      60 ..      42      69 .. 0.86
   2 !   35.3   0.0   5.2e-13   2.1e-09      95     325 ..     237     527 ..     233     529 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.0073
    TIGR00675  2 idLFaGiGGirlgleqag 19
                 +++++G+GG  ++le+a 
  MMETSP1061-20121228|20288_1 43 VEFYSGVGGWTMALEEAL 60
                 89*************986 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 5.2e-13
    TIGR00675  95 rilkekkPkvfllENVkgLvshdkgrtfkviletleelGYkveykvlnakdFgvpQnReRiyivGfrk............................................dendklafefpkpseksakkkrlkdlleesveleeklalteekknllnkllekrrkke.........kltkeqikslyksedkssilktlsakia.....................nlvkggksvevvklldk...........lsesdaekvav.vkkeriRrLtprEcarlqgFpddfefk..vsksqlykqvGNsvvvpvieai 325
                  ril e  P +++lENV g  s+     f+   ++l + GY++ +  l   +  +p +R R y v++r                                             d              +  ++ + kd + + ++   +l +t+e  +  ++ +++    +                   ++++++    k l++k a                      +v g+ s++++   d+             e +++ +    + +r+R  ++ E+arl+gF ++f f+   s +q+ k +GNs+ v v+ ++
  MMETSP1061-20121228|20288_1 237 RILDECLPSLIFLENVVGFESS---SSFQRWRSALRARGYQTGHFHLTPTQVRLPNDRPRYYSVAIRFpesggelrslhgerehgdvhastvpslpsarsllsyvagetkpgD--------------RDGTSVEGKDTVPQIWKAIPELRVTPEDHECATDSADEIPPISsfldpnsadP---------SRESSLRVPEKVLKNKSAwcfdivcpadrrsscfthsygRFVRGTGSILYE-HNDPkngslgllppeEREFSEDWM-SgLDPSRLRYFSGMELARLFGFSKNFSFPsdASPKQQWKLMGNSLNVGVASKL 527
                  8999************998665...6799999**********************************9999************9999999999999877633333333333330..............45666666666666666666666666666666666666665543333322220.........222222222222222222333444444444444444444677777777777.344456777765543334444444.359**********************9998889*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2611.50
//
Query:       MMETSP1061-20121228|20335_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.6    5.2   9.9        9.7    4.4   6.8    1.5  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   6.8    0.0024       9.7      72      87 ..      31      51 ..       5      64 .. 0.37

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0024
    TIGR03685 72 aeaaeeekeeee.....eeee 87
                 +e+  e+k++++     e+e+
  MMETSP1061-20121228|20335_1 31 NEQLXEDKDKDKdqdedEDED 51
                 222122222111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 327.53
//
Query:       MMETSP1061-20121228|20399_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 309.89
//
Query:       MMETSP1061-20121228|20427_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.1e-164  542.5   0.0   1.1e-163  542.2   0.0    1.0  1  TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   8.3e-100  331.7   0.0    1.1e-99  331.4   0.0    1.1  1  TIGR00167 cbbA: ketose-bisphosphate aldolases
    2.5e-41  140.1   0.0    6.4e-41  138.7   0.0    1.6  1  TIGR01859 fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
      3e-24   83.4   0.4    3.7e-23   79.8   0.1    2.7  2  TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
    3.5e-14   50.5   5.0    1.4e-09   35.3   0.3    4.0  3  TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype


Domain annotation for each model (and alignments):
>> TIGR01520  FruBisAldo_II_A: fructose-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  542.2   0.0  1.3e-166  1.1e-163       2     355 ..       5     355 ..       4     357 .. 0.98

  Alignments for each domain:
  == domain 1    score: 542.2 bits;  conditional E-value: 1.3e-166
    TIGR01520   2 ldklktgvilgedvaklfevakeekfaiPainvvssetvnaaleaardakspiilqfsnggaafiaGkGvkdeaekaasiaGaiaaaeyvrsiaekygvpvvlhtdhCakkllpyvdglleadekyfkkegkPlfsshmldlseepieenieiakkylkrmakiklileieiGitGGeedGvdneeadkeelytkPedvekvyeelskispkfsiaaafGnvhGvykpGnvklrPdiladgqeyvaeklglkeakplsfvfhGGsGstkeeikealsyGvvkvnvdtdtqyaalegildyvlknedylqsqvGnpkgeekpnkkvydPrvwlreaeksmkarvekaleelnain 355
                   d++++gv++g+++ kl+e a+ +++aiPa+n++ss+t+na+leaar+ak+p+i+q+sngg +f+ GkGvk    ++ + aG+ia+a++vrs+a+ ygvpvvlh+dhCakkllp++d++l+ade +++k g+Plfsshmldlseep eeni+i+++y+krma++k++le+eiGitGGeedGv+ne++d e+lyt+Pe+v  vye+ls i + fsiaaafGnvhGvykpGnv+l P+ l  +q+y+++ l+ + +kp+++v+hGGsGst eei++a+ +Gvvk+n+dtdtq++++ g++ y  +++dylq q+Gnp+g +kpnkk+ydPrvw+r+ae+sm +rv  ++++l++++
  MMETSP1061-20121228|20427_1   5 ADIVPPGVVTGDNLVKLMEHARANNYAIPAVNCTSSSTANAVLEAARKAKAPVIIQVSNGGGSFLLGKGVKAA--DG-AAAGSIALAMHVRSVAKYYGVPVVLHSDHCAKKLLPWFDAMLAADEDFYAKYGEPLFSSHMLDLSEEPDEENIAICVEYFKRMAPMKIWLEMEIGITGGEEDGVNNEDVDPEKLYTTPEQVFSVYEALSGIGSMFSIAAAFGNVHGVYKPGNVVLSPERLGGHQAYAKKMLNSDLDKPIFLVMHGGSGSTDEEIRTAVVNGVVKMNIDTDTQWSYWDGLRAYESEKRDYLQAQIGNPDGGDKPNKKFYDPRVWIRKAEESMCKRVMVSMDKLSTTG 355
                  58899******************************************************************93..33.569*****************************************************************************************************************************************************************************************************************************************************************************9986 PP

>> TIGR00167  cbbA: ketose-bisphosphate aldolases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  331.4   0.0  1.3e-102   1.1e-99       2     288 ..      14     355 ..      13     357 .. 0.98

  Alignments for each domain:
  == domain 1    score: 331.4 bits;  conditional E-value: 1.3e-102
    TIGR00167   2 alvdvkellekakeegyaipaiNvvnlesikavleaaeeaksPviiqasegaakyiaG..........leaiaalvkalveaekytvPvvlHlDHga.............seesiaeavkagfsSvMiDaSeepfeeNieltkkvvelahkvgvsvEaElGilggeedgvdnskadesalytdpe....eakelvkksqvdalAaaiGnvHGvYkkepkkLkferleeiqklvs..........lplVlHGgsgipeeeikkaiklGvvKvNidTdlqlAfaeavreylkenkde..................ydprkylkeaekamkevvkekikelgsan 288
                  +++++ +l+e+a+ ++yaipa+N++++++++avleaa++ak+Pviiq+s+g+ +++ G           + ia ++++++ a+ y+vPvvlH+DH+a             +e+ +a+ ++++fsS+M+D+Seep eeNi+++ +++++++ + +++E+E+Gi+ggeedgv+n+++d ++lyt+pe    ++++l+ +  ++++Aaa+GnvHGvYk+++++L++erl  +q + +          + lV+HGgsg+++eei++a+ +GvvK+NidTd+q+++++++r y +e++d+                  ydpr+++++ae++m ++v  ++++l +++
  MMETSP1061-20121228|20427_1  14 TGDNLVKLMEHARANNYAIPAVNCTSSSTANAVLEAARKAKAPVIIQVSNGGGSFLLGkgvkaadgaaAGSIALAMHVRSVAKYYGVPVVLHSDHCAkkllpwfdamlaaDEDFYAKYGEPLFSSHMLDLSEEPDEENIAICVEYFKRMAPMKIWLEMEIGITGGEEDGVNNEDVDPEKLYTTPEqvfsVYEALSGIGSMFSIAAAFGNVHGVYKPGNVVLSPERLGGHQAYAKkmlnsdldkpIFLVMHGGSGSTDEEIRTAVVNGVVKMNIDTDTQWSYWDGLRAYESEKRDYlqaqignpdggdkpnkkfYDPRVWIRKAEESMCKRVMVSMDKLSTTG 355
                  5678899*************************************************************9999999999999999*************************999999**********************************************************************99999*****************************************9999999****************************************************************************************************9987 PP

>> TIGR01859  fruc_bis_ald_: fructose-1,6-bisphosphate aldolase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.7   0.0   7.8e-44   6.4e-41       5     279 ..      19     354 ..      16     357 .. 0.80

  Alignments for each domain:
  == domain 1    score: 138.7 bits;  conditional E-value: 7.8e-44
    TIGR01859   5 kellekakkekYavgafninnlellqaileaaeeeksPvivqvsegavkYlg............gikvvval.vkalieklsivPvalhLDhGss.....yescika.....ikaG...fssvmiDashlpleenlketkkvveiahakgvsveaelGklgGieddvvekea....eladideakklvket....gvDaLaiaiGtshGkykge......pkldferl...keikkllnlP..lvlhGasGipeeqlkkaiklgiakvnidtdlrlaftaairkvle..................ekkdeydpRkilaparealkevvkekikvlgsa 279
                   +l+e+a++++Ya++a+n     +++a+leaa+++k+Pvi+qvs+g   +l             g + + a+ v+++++ +  vPv+lh Dh  +     ++++++a      k G   fss m+D s+ p een++   +  +    + +  e+e+G  gG+ed+v ++++     +++++++ ++ + +     + ++a+a G++hG yk        ++l  ++    k ++  l+ P  lv+hG+sG ++e+++ a+  g+ k+nidtd++ ++ + +r + +                   +k+ ydpR ++ +a+e + + v+  +++l  +
  MMETSP1061-20121228|20427_1  19 VKLMEHARANNYAIPAVNCTSSSTANAVLEAARKAKAPVIIQVSNGGGSFLLgkgvkaadgaaaG-SIALAMhVRSVAKYYG-VPVVLHSDHCAKkllpwFDAMLAAdedfyAKYGeplFSSHMLDLSEEPDEENIAICVEYFKRMAPMKIWLEMEIGITGGEEDGVNNEDVdpekLYTTPEQVFSVYEALsgigSMFSIAAAFGNVHGVYKPGnvvlspERLGGHQAyakKMLNSDLDKPifLVMHGGSGSTDEEIRTAVVNGVVKMNIDTDTQWSYWDGLRAYESekrdylqaqignpdggdkPNKKFYDPRVWIRKAEESMCKRVMVSMDKLSTT 354
                  5899******************************************9999755777777766533.3344441555555555.*********9754444466666663332223456669**********************************************98876522226999**998887764211135578*********9997667777734432221121445666666633799**********************************99999888999999*********9877889****************999999988765 PP

>> TIGR01858  tag_bisphos_ald: class II aldolase, tagatose bisphosphate family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.8   0.1   4.5e-26   3.7e-23       6     249 ..      20     306 ..      17     313 .. 0.73
   2 ?   -0.6   0.0      0.14   1.2e+02     248     270 ..     323     345 ..     320     357 .. 0.77

  Alignments for each domain:
  == domain 1    score: 79.8 bits;  conditional E-value: 4.5e-26
    TIGR01858   6 ellkeaqkgGyavpafnihnletlqvvvetaaelkspvilaGtpgtfky.............agteelvalvsaaakkyelplalhldhhes.....l.......ddikqk.vaaGvksvmidashlsfeenvklvkevvdfchrfdasveaelGrlgGveddlsvdee..dalytdpdeakefvea.tGvds...lavaiGtahGlykeap.kldfdrl........akirekvd..vplvlhGasdvpdelvrrtielGiskvnvatelkiafsdalkayfienp 249
                  +l+++a+++ ya+pa n     t ++v+e+a + k+pvi+  + g  ++             ag+  l   v+++ak y +p+ lh dh  +     +       +d   k  +  + s m+d s  + een+++  e  +    +   +e e+G  gG ed ++ ++   + lyt p++     ea +G+ s   +a a G  hG+yk     l  +rl        + +    d  + lv+hG+s+ +de++r ++  G+ k+n+ t+ + ++ d l+ay  e++
  MMETSP1061-20121228|20427_1  20 KLMEHARANNYAIPAVNCTSSSTANAVLEAARKAKAPVIIQVSNGGGSFllgkgvkaadgaaAGSIALAMHVRSVAKYYGVPVVLHSDHCAKkllpwFdamlaadEDFYAKyGEPLFSSHMLDLSEEPDEENIAICVEYFKRMAPMKIWLEMEIGITGGEEDGVNNEDVdpEKLYTTPEQVFSVYEAlSGIGSmfsIAAAFGNVHGVYKPGNvVLSPERLgghqayakKMLNSDLDkpIFLVMHGGSGSTDEEIRTAVVNGVVKMNIDTDTQWSYWDGLRAYESEKR 306
                  57899**********************************9765543222111111111111122333444578899*************875333332111221122222303445899****************98888888889999**************9987651268*******9887775378875222799*********975416778888443322111122333433558*****************************************87765 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.14
    TIGR01858 248 npeandprkylksakeamkkvve 270
                  n++  dpr +++ a e+m k v 
  MMETSP1061-20121228|20427_1 323 NKKFYDPRVWIRKAEESMCKRVM 345
                  67889************977554 PP

>> TIGR01521  FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.3   1.7e-12   1.4e-09       5      84 ..      19     110 ..      17     116 .. 0.77
   2 !    6.1   0.0    0.0013       1.1     151     201 ..     176     229 ..     168     270 .. 0.66
   3 !    8.4   0.1   0.00026      0.22     255     291 ..     267     303 ..     259     361 .. 0.82

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.7e-12
    TIGR01521   5 rqlldhaaergygvpafnvnnleqilaimeaadktdspvilqasrgarsy............agevllrklvlaaveeypdipvvlhqdhgn 84 
                   +l++ha  ++y +pa n        a++eaa+k+ +pvi+q+s+g  s+            a+ ++   + +  v +y  +pvvlh dh +
  MMETSP1061-20121228|20427_1  19 VKLMEHARANNYAIPAVNCTSSSTANAVLEAARKAKAPVIIQVSNGGGSFllgkgvkaadgaAAGSIALAMHVRSVAKYYGVPVVLHSDHCA 110
                  6899****************************************9987764444444322222223333445556788999********976 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0013
    TIGR01521 151 kgeaedghgfegaldrsqlltdpeeaaefvkk.t...kvdalavaigtshgaykf 201
                  +g++edg+  e  +d  +l t pe+  +  +  +    + ++a a g  hg yk 
  MMETSP1061-20121228|20427_1 176 TGGEEDGVNNED-VDPEKLYTTPEQVFSVYEAlSgigSMFSIAAAFGNVHGVYKP 229
                  47899**99886.799********987765542311145678999********84 PP

  == domain 3    score: 8.4 bits;  conditional E-value: 0.00026
    TIGR01521 255 gvpveeivkgikfgvrkvnidtdlrlaataalrrvaa 291
                  g   eei   +  gv k+nidtd + +    lr   +
  MMETSP1061-20121228|20427_1 267 GSTDEEIRTAVVNGVVKMNIDTDTQWSYWDGLRAYES 303
                  66779******************99887777776544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 1764.25
//
Query:       MMETSP1061-20121228|20463_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1061-20121228|20446_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-59  199.0   0.3    4.4e-54  181.5   0.2    2.1  2  TIGR01981 sufD: FeS assembly protein SufD
    2.1e-26   90.4   0.2    1.1e-23   81.4   0.0    2.3  2  TIGR01980 sufB: FeS assembly protein SufB


Domain annotation for each model (and alignments):
>> TIGR01981  sufD: FeS assembly protein SufD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   8.8e-07    0.0018      30      87 ..     367     429 ..     334     434 .. 0.81
   2 !  181.5   0.2   2.1e-57   4.4e-54      88     269 ..     460     643 ..     450     647 .. 0.93

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 8.8e-07
    TIGR01981  30 eekrvlasrllivveegakvtvlesh.....lnleedkalnnlveivvgenAsvelikvqnls 87 
                   +  ++++r l+v++e+++++v+        ++ +  k++n+ ++++v+e+A+v++ ++++++
  MMETSP1061-20121228|20446_1 367 CDGMSFHPRSLVVAGENSQLSVVQACvdlndDSDHVPKLYNGFTQMIVKEGANVTHSFLEESG 429
                  4567899****************9998877667778899******************999876 PP

  == domain 2    score: 181.5 bits;  conditional E-value: 2.1e-57
    TIGR01981  88 atsvllstvr.vkleedarvrlvdvelg.gklsrvelsvdlegesakaeikglyladksqhldvetlvehngkntkseilikgvlkdkakavfrGnidvskgakktdarqsnrtLlLsdkaradtkPeLeIdaddVkasHgAtvgqldeeeLFYLrsRGldeaeAkrlliegflkevleeidve 269
                   ++++l+ v+  ++++d++++ +++  g +++ r+  sv+l + +a+a++ g++l  ++q++d +t++ h+g+ t+se+++k+++ ++a++ frG+i+v++ a++td++q +rt+lLsdk+ra ++P+LeI addV+++HgAtv+ l eeeLFYLrsRGld   A++ll+++f++ v + +d++
  MMETSP1061-20121228|20446_1 460 MKDTHLECVDvQCIGDDSTYEGTVMSVGgSGRIRIAHSVSLLKPRAHAKVYGFFLSGGNQRTDCKTNIHHAGQGTTSEQIQKNMIGGRATGAFRGRIRVEQSAQQTDSQQLSRTILLSDKSRAWSVPSLEIIADDVQCTHGATVSDLSEEELFYLRSRGLDTSLARNLLMYAFAADVCNGVDKA 643
                  567788888845799******9999875167999**********************************************************************************************************************************************99988875 PP

>> TIGR01980  sufB: FeS assembly protein SufB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0   0.00026      0.54     162     252 ..     319     424 ..     307     431 .. 0.72
   2 !   81.4   0.0   5.5e-27   1.1e-23     291     434 ..     496     638 ..     471     643 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.00026
    TIGR01980 162 nkfaaLnsavwsgGsfvyvPkgvkve.iplqtyfrin........s...eatgqfertliiadegasvhyieGCsaPvyske...slhaavvelivkedarvkyst 252
                    faaLn+    g ++v vP++   +  +l+  + +n        s   ++++   r+l++a e+++++ +  C     +++   +l++++  +ivke+a+v +s 
  MMETSP1061-20121228|20446_1 319 ACFAALNTRRTGGVAYVQVPDDYDADnSELKPVMILNvvtnnggsSagcDGMSFHPRSLVVAGENSQLSVVQACVDLNDDSDhvpKLYNGFTQMIVKEGANVTHSF 424
                  569999999999999999999998863577777776622222211011123455679*****************9766554422279**************99876 PP

  == domain 2    score: 81.4 bits;  conditional E-value: 5.5e-27
    TIGR01980 291 yPssiLkgekaktevlsialakkgqqkdtGakvihlapetsstiisksiskdggkssyrGlvkiakkakgakssveCdslllddesasdtiPyieveedkvsveheatvskiseeqlfylrsrGlseedakamivsGfvedilk 434
                  + s+ L   +a+++v++  l++ +q +d  + ++h+++ t s+ i k +  + ++ ++rG ++++++a+++ s+    ++ll d+s++  +P  e+  d+v+ +h atvs +see+lfylrsrGl+   a+++++  f  d+ +
  MMETSP1061-20121228|20446_1 496 H-SVSLLKPRAHAKVYGFFLSGGNQRTDCKTNIHHAGQGTTSEQIQKNMIGGRATGAFRGRIRVEQSAQQTDSQQLSRTILLSDKSRAWSVPSLEIIADDVQCTHGATVSDLSEEELFYLRSRGLDTSLARNLLMYAFAADVCN 638
                  3.4445567899*******************************************************************************************************************************99976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 2804.77
//
Query:       MMETSP1061-20121228|20469_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1182.83
//
Query:       MMETSP1061-20121228|20452_1  [L=1192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0082   14.0   8.0      0.054   11.3   1.1    3.5  4  TIGR02573 LcrG_PcrG: type III secretion protein LcrG


Domain annotation for each model (and alignments):
>> TIGR02573  LcrG_PcrG: type III secretion protein LcrG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0      0.73     3e+03      16      29 ..     446     459 ..     439     464 .. 0.74
   2 !    4.6   0.1    0.0017         7      24      52 ..     979    1007 ..     971    1035 .. 0.76
   3 ?   -1.4   0.0      0.12     5e+02      19      36 ..    1019    1036 ..    1009    1063 .. 0.68
   4 !   11.3   1.1   1.3e-05     0.054      10      69 ..    1057    1116 ..    1048    1122 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.73
    TIGR02573  16 rdsdeRakllqell 29 
                   d++e   ll+e+l
  MMETSP1061-20121228|20452_1 446 TDAEEHLALLAEIL 459
                  57888888888875 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0017
    TIGR02573   24 llqelleglGlapeageklfggleaelvk 52  
                   +l+++  +lGl++eagekl+   +++ + 
  MMETSP1061-20121228|20452_1  979 FLANIQTKLGLSSEAGEKLMMDSQRKFLT 1007
                   6889999*************999886544 PP

  == domain 3    score: -1.4 bits;  conditional E-value: 0.12
    TIGR02573   19 deRakllqelleglGlap 36  
                    eR k + e ++g+Gl  
  MMETSP1061-20121228|20452_1 1019 PERIKAFREKCNGMGLDL 1036
                   578888899999888854 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 1.3e-05
    TIGR02573   10 aaelairdsdeRakllqelleglGlapeageklfggleaelvkaaeqeLleevkRrRsrq 69  
                    a  a + +++ +++l+e+ e+l + +e  e +f ++  +l+++a  e+ +e+ R R++ 
  MMETSP1061-20121228|20452_1 1057 PALKAGEITEDNQDILAEIQESLNIDSEECEAVFFKTVLRLAQEALSEVEAELLRGREEN 1116
                   4555555578899*******************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.48u 0.13s 00:00:00.61 Elapsed: 00:00:00.42
# Mc/sec: 3745.98
//
Query:       MMETSP1061-20121228|20474_1  [L=380]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-42  144.3   0.0    1.5e-42  144.0   0.0    1.1  1  TIGR02825 B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
    4.3e-17   59.8   2.0    1.3e-16   58.1   0.8    1.8  2  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
    5.6e-17   59.5   0.1      1e-16   58.7   0.1    1.4  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    2.2e-12   44.2   5.1    9.3e-12   42.2   0.3    2.9  4  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    1.1e-07   29.4   0.0    2.1e-07   28.5   0.0    1.4  2  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
    1.7e-05   21.9   0.5    2.3e-05   21.4   0.3    1.1  1  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
    0.00012   19.0   0.2    0.00029   17.8   0.1    1.6  1  TIGR00692 tdh: L-threonine 3-dehydrogenase
    0.00075   16.5   2.1     0.0011   16.0   1.3    1.4  1  TIGR03201 dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
  ------ inclusion threshold ------
      0.025   11.5   0.0      0.038   10.9   0.0    1.2  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR02825  B4_12hDH: leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.0   3.3e-45   1.5e-42       4     326 ..      30     374 ..      27     375 .. 0.85

  Alignments for each domain:
  == domain 1    score: 144.0 bits;  conditional E-value: 3.3e-45
    TIGR02825   4 kswtlkkhfeg.yptdsdfelkt...velpplnngevllealflsvdpymrva.akrlkegdtmmgqqv.....arvves.knsalpkgtivlassgwtshsisdgkdleklltewpdtlplslalgtvgm.pgltayfglleic..gvkggetvlvnaaagavgsvvgqiaklkgckvvgaagsdekvayl.kklgfdvafnyktv.ksleetlkkaspdgydcyfdnvggefsntvirqmkkfgriaicgaisty.....nrtgp.l..ppgpapevviy.qelrmegfivnrwkgevrqkalkellkwvlegkiqykeyviegfenmpaafmgmlkgenlgktiv 326
                  ++w lk+  +g +  d d el t   +e p l + evl+e  +lsvd ++r     r   g   +g  +       vv +   s + +gt v  ++  +   + d k+l +  ++ p  lp s +lg +g+  gltay g++ +     + getv+v+ aagavgs+  q++k  g++v+g ag   k  +l + lg d +++yk+v +sl + +   +pdg d  +dnvgg + n+++ +++  gr+ icgais+y     n t + +   +gp+    +  +   m gf v ++        +  +  w + gk+ + e+v eg+en+p a+ +++ ge +gkt+v
  MMETSP1061-20121228|20474_1  30 RKWILKRRPKGiFDPDRDAELVTeteTETPELGDTEVLVEPQLLSVDAFLRTMmEERAYHGSLPIGSPIpaigyGTVVRAgPGSGYAVGTTVHGMLAASDAVVVDSKHLIRS-VKLP-FLPRSSSLGLLGLtTGLTAYCGVFCVPrrAPRKGETVVVTGAAGAVGSIAVQLCKSTGARVIGVAGGPAKGRFLaETLGCDGVIDYKSVdRSLADQIADNCPDGIDFIYDNVGGGILNSLLFRINGGGRVVICGAISQYsgnlnNGTKEdCcgVEGPSNYLKLAeRGAEMRGFNVMQYITRLPFMIVGMIYLW-ARGKVIMSEHVEEGIENFPRALQKLFTGETIGKTLV 374
                  68******999678899999987555799*********************97516788999999998772222235666515689************99999******9874.5666.69**********8469*******9875225689****************************************94479**********9559***********************************************444322232223123677777666514578*********999998888777777.58********************************87 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.1   0.8   2.9e-19   1.3e-16      86     245 ..     114     282 ..     109     289 .. 0.81
   2 ?   -0.1   0.0      0.15        69     300     324 .]     352     376 ..     338     376 .. 0.86

  Alignments for each domain:
  == domain 1    score: 58.1 bits;  conditional E-value: 2.9e-19
    TIGR02823  86 gydlgvshaGGys..eyarvkadwvvplPeglslkeamilG....tAGfTAaLsvealekagltpeegevlVtGAtGgVgslavalLsklGyevvavtgkkeeeeyl.kelGakevisreeleeekkkpleker...wagavDtvGgkvlanvlkqlkyggavaacGlaa 245
                  gy +g++ +G ++  + + v ++ +++  +   l ++  lG    t G+TA   v+ + ++  ++    v+VtGA+G+Vgs+av+l ++ G +v+ v g  ++  +l ++lG + vi+ ++++++ +  ++ +     + + D+vGg +l+++l +++ gg v +cG  +
  MMETSP1061-20121228|20474_1 114 GYAVGTTVHGMLAasDAVVVDSKHLIRSVKLPFLPRSSSLGllglTTGLTAYCGVFCVPRRAPRKG-ETVVVTGAAGAVGSIAVQLCKSTGARVIGVAGGPAKGRFLaETLGCDGVIDYKSVDRSLADQIADNCpdgIDFIYDNVGGGILNSLLFRINGGGRVVICGAIS 282
                  899999999977511567788889887655555556666663336788888889999988865544.589*********************************9988357************99988888776522266689*************************876 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.15
    TIGR02823 300 sleelpevlekllagevkGRvvvkv 324
                   +e++p++l+kl +ge+ G+++v+v
  MMETSP1061-20121228|20474_1 352 GIENFPRALQKLFTGETIGKTLVRV 376
                  68999*****************987 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.1   2.2e-19     1e-16      13     245 ..      49     286 ..      42     291 .. 0.74

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 2.2e-19
    TIGR02824  13 evlelseaplpelkagevlikvaAaGvN...rpDvlQraGkYppppgaseilGLEvaGevvavgeevskfkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalp....EtffTvwsnlfelakl..kagetvLihggasGiGttaiqlakalgakvlvtagsdekle.aaekLGadvainyreed..FvevvkeetegkGvdvilDivggsyleknlkalakdGrlvliallggaka 245
                  e ++ +e+++pel+  evl++ +   v    r  +  ra +   p g s+i+ +   G+vv +g   s ++vG  v +++a+   ++ vvv+ k++++  +   l  + +l      t +T++  +f + +   ++getv++ g+a+ +G+ a+ql+k++ga+v+  ag   k +  ae+LG d +i+y++ d   ++++ ++    G+d i D vgg  l+  l  ++  Gr+v+ + +   + 
  MMETSP1061-20121228|20474_1  49 ELVTETETETPELGDTEVLVEPQLLSVDaflRTMMEERAYHGSLPIG-SPIPAIG-YGTVVRAGP-GSGYAVGTTVHGMLAA---SDAVVVDSKHLIRSVKLPFLPRSSSLGllglTTGLTAYCGVFCVPRRapRKGETVVVTGAAGAVGSIAVQLCKSTGARVIGVAGGPAKGRfLAETLGCDGVIDYKSVDrsLADQIADNCP-DGIDFIYDNVGGGILNSLLFRINGGGRVVICGAISQYSG 286
                  55566666777777777777666665553334444445444444444.5666665.388888884.6677899999998875...7888888888887665544555555432222577999*9999877651267*************************************9988999**********876336677776665.7*****************************998876555 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       1.6   7.4e+02      29      43 ..      55      69 ..      49      70 .. 0.84
   2 !   42.2   0.3     2e-14   9.3e-12     171     246 ..     160     236 ..     120     249 .. 0.86
   3 ?    3.3   0.0     0.013       5.9     281     319 ..     250     288 ..     236     291 .. 0.84
   4 ?   -1.7   0.0      0.44     2e+02     362     389 ..     351     378 ..     334     380 .] 0.70

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 1.6
    TIGR01751 29 qvpvpelgpdevLva 43
                 + ++pelg+ evLv+
  MMETSP1061-20121228|20474_1 55 ETETPELGDTEVLVE 69
                 5689*********96 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 2e-14
    TIGR01751 171 taatayrqLvgkkpaelkpGdavLiWGaaGGLGsyaiqlaraaGgipvavvssedkaei.arelGaeavidrqdfdl 246
                  t+ tay  ++     + ++G++v++ GaaG +Gs+a+ql +++G+  ++v   ++k+++ a  lG+++vid + +d 
  MMETSP1061-20121228|20474_1 160 TGLTAYCGVFCVPRRAPRKGETVVVTGAAGAVGSIAVQLCKSTGARVIGVAGGPAKGRFlAETLGCDGVIDYKSVDR 236
                  46699999999999999*****************************************83567*******9887654 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.013
    TIGR01751 281 vkivlehsGratfpvsvyvvkrgGmvvicggttGynldl 319
                  ++ +++ +G   +   ++ ++ gG vvicg+ + y  +l
  MMETSP1061-20121228|20474_1 250 IDFIYDNVGGGILNSLLFRINGGGRVVICGAISQYSGNL 288
                  6777888888889999999**************998766 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.44
    TIGR01751 362 ysleeigkaaqkllanelqGkvavLvla 389
                   ++e+ ++a qkl ++e++Gk+ v v +
  MMETSP1061-20121228|20474_1 351 EGIENFPRALQKLFTGETIGKTLVRVRS 378
                  4678888999999999999988877765 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0         2   8.9e+02      17      42 ..      51      76 ..      45      87 .. 0.80
   2 !   28.5   0.0   4.5e-10   2.1e-07     141     203 ..     171     233 ..     114     254 .. 0.80

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 2
    TIGR02817 17 lvdielakPkpkgrdllvevkavsvn 42
                 +++ e++ P+ ++ ++lve + +sv+
  MMETSP1061-20121228|20474_1 51 VTETETETPELGDTEVLVEPQLLSVD 76
                 56778899999999999999999885 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 4.5e-10
    TIGR02817 141 ieedvagekralliiGaaGGvgsiliqlarqlteltviatasraesqew.vkelGahavidhsk 203
                  + + ++ + ++++++GaaG vgsi++ql +  t+++vi+ a  +   ++ +++lG + vid+  
  MMETSP1061-20121228|20474_1 171 VPRRAPRKGETVVVTGAAGAVGSIAVQLCK-STGARVIGVAGGPAKGRFlAETLGCDGVIDYKS 233
                  5666788999******************97.599*******9987766615789*******853 PP

>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.3   5.1e-08   2.3e-05     168     265 ..     156     259 ..     121     284 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.1e-08
    TIGR02818 168 cgvttgigavlntakv.....eegatvavfgl.ggiglsviqgaklakasriiaidineakfe.lakklgatdlvnpkdydkpiqeviveltdggvdysfecign 265
                   g+ttg+ a      v     ++g+tv v g  g++g  ++q +k ++ +r+i++   +ak   la+ lg+  +++ k  d+ + + i +    g+d+ ++ +g 
  MMETSP1061-20121228|20474_1 156 LGLTTGLTAYCGVFCVprrapRKGETVVVTGAaGAVGSIAVQLCKSTG-ARVIGVAGGPAKGRfLAETLGCDGVIDYKSVDRSLADQIADNCPDGIDFIYDNVGG 259
                  36777777755544432222379*******963889999999998776.59*********9763699**********************************9996 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   6.4e-07   0.00029     160     261 ..     177     279 ..     171     290 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 6.4e-07
    TIGR00692 160 laGesvlvsGa.GpiGllavavakaaGasqvivsdkneyrlelakkvGatrvvnvaked..lvkvvaeltsgeGvdvvlelsGapkaleqgldavangGrvallg 261
                    Ge+v+v+Ga G +G +av + k++Ga+ + v+      + la  +G + v++ +  d  l + +a+    +G+d + +  G    l+  l  ++ gGrv + g
  MMETSP1061-20121228|20474_1 177 RKGETVVVTGAaGAVGSIAVQLCKSTGARVIGVAGGPAKGRFLAETLGCDGVIDYKSVDrsLADQIAD-NCPDGIDFIYDNVGG-GILNSLLFRINGGGRVVICG 279
                  679******9549****************9999998888999***********987655215667766.4579****9999886.579999999******99877 PP

>> TIGR03201  dearomat_had: 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   1.3   2.3e-06    0.0011     165     217 ..     177     231 ..     111     247 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.3e-06
    TIGR03201 165 kkgdlviviGv.GGvGgyavqvakalGaavvaidideeklemvk.kaGadlilnp 217
                  +kg+ v+v G+ G vG+ avq+ k+ Ga v+++   ++k   +  + G d +++ 
  MMETSP1061-20121228|20474_1 177 RKGETVVVTGAaGAVGSIAVQLCKSTGARVIGVAGGPAKGRFLAeTLGCDGVIDY 231
                  689999****9899*******************9999987765414566666655 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   8.2e-05     0.038       4      54 ..     179     229 ..     177     246 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 8.2e-05
    TIGR02622   4 gkkvlvtGhtGfkGsWlslwLkelGaevaGysldpetkpnlfellklakkl 54 
                  g +v+vtG  G  Gs  +   k+ Ga+v+G +  p++ + l e+l  +  +
  MMETSP1061-20121228|20474_1 179 GETVVVTGAAGAVGSIAVQLCKSTGARVIGVAGGPAKGRFLAETLGCDGVI 229
                  689********************************9999999988877666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (380 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 1617.93
//
Query:       MMETSP1061-20121228|20481_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 2239.42
//
Query:       MMETSP1061-20121228|20488_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 827.93
//
Query:       MMETSP1061-20121228|20504_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-20   70.2   1.9    4.3e-11   39.9   0.8    3.0  2  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    4.3e-12   43.4   0.1      1e-07   29.0   0.1    2.7  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    2.1e-07   28.7   1.9     0.0052   14.3   0.0    2.3  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    8.7e-07   26.0   0.3      0.037   10.8   0.0    3.0  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
      5e-06   23.4   0.1     0.0042   13.8   0.1    2.9  3  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    6.1e-05   19.4   0.3    8.1e-05   19.0   0.2    1.1  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    8.6e-05   19.6   0.5    0.00018   18.5   0.4    1.5  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    0.00024   18.4   2.1     0.0004   17.6   1.4    1.3  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0008   15.8   0.1     0.0008   15.8   0.0    1.5  2  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
    0.00084   16.1   1.7     0.0012   15.5   1.2    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00091   15.8   0.3     0.0014   15.2   0.2    1.2  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0013   15.7   0.4     0.0018   15.2   0.3    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0024   14.5   0.5     0.0034   13.9   0.3    1.2  1  TIGR02734 crtI_fam: phytoene desaturase
     0.0055   13.6   0.4       0.01   12.7   0.3    1.4  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0068   13.4   0.8      0.015   12.2   0.1    1.8  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0077   11.8   0.2      0.012   11.2   0.2    1.2  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
  ------ inclusion threshold ------
      0.023   11.5   1.2        0.1    9.4   0.4    2.2  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
       0.03   10.8   0.6      0.045   10.3   0.4    1.1  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
      0.037   11.0   0.4      0.057   10.4   0.3    1.2  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.037   10.1   0.0      0.056    9.6   0.0    1.1  1  TIGR02214 spoVD_pbp: stage V sporulation protein D


Domain annotation for each model (and alignments):
>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.8   2.1e-13   4.3e-11       1     171 [.     157     344 ..     157     376 .. 0.74
   2 !   25.9   0.0   3.7e-09   7.7e-07     285     363 ..     499     576 ..     489     588 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 2.1e-13
    TIGR03219   1 lrvaiiGGGiaGvalalelsksshlnvklfeaapafgevGaGvsfGanavraieglGlaeaykk.va..drtsapwqdiwfewrrgs......da.......sylgatiapgvGqssvhradfld.allkk.lpegiakfgkkaksiee..qaeevevsfedGteyradlligadGiksalrdyvlegagq 171
                  lrv + GGG+aG+  a+  ++   ++v +fe a +++  G  +   +na+rai+++     y++ va    t++    +   +r+g+      da       + lg ++  g+  + v     ++  ++k+ lpeg  +++ +++s+e+  +++ v  ++edGt++ ad+l+gadGi s +r+ +l+g g 
  MMETSP1061-20121228|20504_1 157 LRVLVAGGGLAGLV-AAAACHAKGMKVAIFEQASTYAPYGGPIQIQSNALRAIQRINPK-CYEElVAagTVTADRVSGLKIGYRKGNklaglyDAgdwlvrfDTLGPALEAGLPATVVVDRPVIQqIMVKHgLPEGTVRIKSRIQSFEDlgKGQGVVATLEDGTKAYADVLVGADGIWSQIRK-ILHGLGE 344
                  6899********96.55679999********************************9854.3433144114566778889999999962222223333333334578888888887776655566634444449*************9983345789999***********************7.5665554 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 3.7e-09
    TIGR03219 285 lwalhdlaelpgyvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrrerackvq 363
                  l +l     l  + +G val Gda h m+p  G G  q  ed + l + l+   ++++d+p  l  y  +r  r++ +q
  MMETSP1061-20121228|20504_1 499 LTTLDPQRLLSPWAKGPVALCGDACHPMMPNLGQGGCQATEDGFRLGEELGGV-TNTKDIPWALGKYSRLRVIRTAIIQ 576
                  555555666778899***********************************976.57899************99988877 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.1     5e-10     1e-07       2     170 ..     159     338 ..     158     341 .. 0.73
   2 !   11.1   0.0   0.00013     0.027     279     346 ..     515     579 ..     506     588 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 5e-10
    TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaaekaksp...afdnRvsAlsaasiellekigvwdklekkraqpiqkirvsdagskg.......alefdaaevg...aeaLgyvvenkvlqqaLlealqekknkvtllapaeveeleresdaveltlsdgetleakLlvgADGanSkvrqa 170
                  ++++GgGl+Gl+ A+a  +++ +kva++e++ + +++       +n   A++    + +e++ +  ++ ++r++ ++  +   ++ +g        ++fd    +     +  +vv+  v+qq + +    +  +v+++ +++  e   + + v  tl+dg++ +a++lvgADG  S++r+ 
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHAKG-MKVAIFEQASTYAPYGGpiqIQSNALRAIQRINPKCYEELVAAGTVTADRVSGLKIGYRKGNKLAGlydagdwLVRFDTLGPAleaGLPATVVVDRPVIQQIMVKHGLPEG-TVRIKSRIQSFEDLGKGQGVVATLEDGTKAYADVLVGADGIWSQIRKI 338
                  799***************887.*********99995444233456666788888999*****99999999777766544444433333888888899999854332112233567777777777777655554.455555555555555699****************************96 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00013
    TIGR01988 279 rvaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaallaat 346
                   val+GdA h + P  GQG    ++D  +L e l   v++ +di    +L +Y+r r   +a+++++ 
  MMETSP1061-20121228|20504_1 515 PVALCGDACHPMMPNLGQGGCQATEDGFRLGEELGG-VTNTKDIP--WALGKYSRLRVIRTAIIQGFA 579
                  59********************************95.77778997..889999999988888777765 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.3   4.5e-05    0.0092       3      34 ..     159     190 ..     158     241 .. 0.90
   2 !   14.3   0.0   2.5e-05    0.0052      85     156 ..     270     340 ..     254     386 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.5e-05
    TIGR02032   3 vvvvGaGpaGssaAlrlakkGlrVlllekkel 34 
                  v+v G+G aG  aA+    kG++V+++e+++ 
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHAKGMKVAIFEQAST 190
                  89**************************9954 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 2.5e-05
    TIGR02032  85 alvidRkefDelLaekAqeagaelllettvlsveied...ekvkvevredekkevtakivigAdGakskvakklg 156
                  ++v+dR +  + ++++   +g  ++++ +++s  +ed    +++v++ ed   + +a++++gAdG  s+++k l 
  MMETSP1061-20121228|20504_1 270 TVVVDRPVIQQIMVKHGLPEGT-VRIKSRIQS--FEDlgkGQGVVATLED-GTKAYADVLVGADGIWSQIRKILH 340
                  6799999999999999999876.599999999..5555574444555554.6899***************99665 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.2   0.0     0.036       7.5       3      80 ..     159     228 ..     157     241 .. 0.65
   2 !   10.8   0.0   0.00018     0.037     158     188 ..     308     338 ..     270     341 .. 0.84
   3 !    8.6   0.0   0.00083      0.17     334     363 ..     515     544 ..     509     573 .. 0.79

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.036
    TIGR01989   3 vvivGgGlvGlalAaalkknpslkdkkvllldavdapklksrkyekksevysnRvssitpasielfkkigawdhiekd 80 
                  v+++GgGl+Gl  Aaa ++    k  kv + +   a   +   y  + +  sn + +i+    + ++++ a  +++ d
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHA----KGMKVAIFEQ--ASTYA--PYGGPIQIQSNALRAIQRINPKCYEELVAAGTVTAD 228
                  899********99998654....5667777776..33332..255555555565555555555555555555555555 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00018
    TIGR01989 158 nlvkikledgetlktklliGADGanSkvRka 188
                  + v  +ledg++ ++++l+GADG  S++Rk 
  MMETSP1061-20121228|20504_1 308 QGVVATLEDGTKAYADVLVGADGIWSQIRKI 338
                  556679***********************96 PP

  == domain 3    score: 8.6 bits;  conditional E-value: 0.00083
    TIGR01989 334 rvALvGDAAHrvHPLAGqGvNlGfsDvesL 363
                   vAL+GDA H + P  GqG     +D   L
  MMETSP1061-20121228|20504_1 515 PVALCGDACHPMMPNLGQGGCQATEDGFRL 544
                  59*****************76666665555 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   2.1e-05    0.0042       2      37 ..     159     193 ..     158     210 .. 0.88
   2 !    5.2   0.0    0.0084       1.7     137     168 ..     308     339 ..     270     342 .. 0.72
   3 ?    0.3   0.0      0.26        52     278     330 ..     516     568 ..     509     581 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.1e-05
    TIGR01984   2 viivGgglvGlslAlaLsrksklkialieaksaeaa 37 
                  v++ Gggl+Gl+ A a ++k+ +k+a++e+ s+ a+
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHAKG-MKVAIFEQASTYAP 193
                  789******************.********998766 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0084
    TIGR01984 137 deaevkldneqkleakLlvaAdGanskvresl 168
                  + +  +l++++k  a++lv AdG  s++r+ l
  MMETSP1061-20121228|20504_1 308 QGVVATLEDGTKAYADVLVGADGIWSQIRKIL 339
                  347789999*******************9976 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.26
    TIGR01984 278 vvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylker 330
                  v+l g+a + + P  gQG  +   D + L e l   ++      +l +y++ r
  MMETSP1061-20121228|20504_1 516 VALCGDACHPMMPNLGQGGCQATEDGFRLGEELGGVTNTKDIPWALGKYSRLR 568
                  899***************99999999999988865442222344555565555 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   3.9e-07   8.1e-05     341     421 ..     124     201 ..      77     226 .. 0.66

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 3.9e-07
    TIGR03997 341 CnqeCvgrvglnrelg.CvvnPraGrelkeavtlkkarrrkkvlvvGgGPaGleaaataarrGhrvtllereee...lGGqvkla 421
                      Cvg +  n +    v  P  Gr     vt +++    +vlv+GgG aGl aaa   ++G +v ++e++++    GG +++ 
  MMETSP1061-20121228|20504_1 124 LKGMCVGETDDNAWWRqKVDIPEGGRA----VTKEEP---LRVLVAGGGLAGLVAAAACHAKGMKVAIFEQASTyapYGGPIQIQ 201
                  455666666666655314555666666....333333...47*****************************97622247777665 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.4   8.7e-07   0.00018       2      35 ..     159     192 ..     158     228 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 8.7e-07
    TIGR03197   2 vavIGaGiAgaalalsLarrGvqvtllekdekla 35 
                  v+v G+G+Ag+++a ++ ++G++v ++e++++ a
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHAKGMKVAIFEQASTYA 192
                  899**************************98776 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.4   1.9e-06    0.0004       1      31 [.     159     189 ..     159     199 .. 0.93

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.9e-06
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarr 31 
                  v+v GgGlAGL AA++  ++G++v ++E + 
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHAKGMKVAIFEQAS 189
                  789*************************986 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.9e-06    0.0008     348     413 ..     126     200 ..      82     219 .. 0.76
   2 ?   -3.6   0.1         3   6.2e+02     133     168 ..     333     369 ..     332     374 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.9e-06
    TIGR03996 348 vtcvGnp...aaGfetvdpdeaeraat...pgdvlvvGGGpaGleaarvlavrGhrvtlaeasar...lGGmvri 413
                    cvG+    a   + vd  e++ra+t   p  vlv GGG aGl aa    ++G +v + e+++    +GG ++i
  MMETSP1061-20121228|20504_1 126 GMCVGETddnAWWRQKVDIPEGGRAVTkeePLRVLVAGGGLAGLVAAAACHAKGMKVAIFEQASTyapYGGPIQI 200
                  5688875211233578999999999984445679*************************9998752225777766 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 3
    TIGR03996 133 aeidslvaGfragaaaavaagldGveld.aGprsllr 168
                  ++i +++ G+ +ga+   a+g  G  ld a +r l r
  MMETSP1061-20121228|20504_1 333 SQIRKILHGLGEGAGGFAASGAAGGALDdAEARKLAR 369
                  5789999999999999999999998886256666655 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   1.2     6e-06    0.0012       1      32 [.     159     190 ..     159     193 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6e-06
    TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkk 32 
                  v++ GgG aGl+aA+++ ++g kV+++E+++ 
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHAKGMKVAIFEQAST 190
                  6899************************9875 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.2   6.9e-06    0.0014       3      35 ..     158     190 ..     156     198 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.9e-06
    TIGR02733   3 svvviGaGiaGltaaallakrGlevtlleaaaq 35 
                  +v+v G+G+aGl aaa   ++G++v ++e+a+ 
  MMETSP1061-20121228|20504_1 158 RVLVAGGGLAGLVAAAACHAKGMKVAIFEQAST 190
                  689***************************975 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.3   8.7e-06    0.0018       2      34 ..     158     190 ..     157     199 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 8.7e-06
    TIGR03364   2 dvvvvGaGivGlahAlaaarrGlkVtvierssr 34 
                  +v+v G+G+ Gl  A+a +++G+kV+++e++s+
  MMETSP1061-20121228|20504_1 158 RVLVAGGGLAGLVAAAACHAKGMKVAIFEQAST 190
                  699**************************9875 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.3   1.7e-05    0.0034       1      32 [.     159     190 ..     159     203 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.7e-05
    TIGR02734   1 avViGaGlgGLAlAirLaaaGievtvlekrdk 32 
                  ++V G+Gl+GL +A+   a+G++v ++e+ ++
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHAKGMKVAIFEQAST 190
                  5799************************9875 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.3     5e-05      0.01       3      31 ..     159     187 ..     157     193 .. 0.91

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 5e-05
    TIGR03378   3 viiiGgGlaGlscalrlaeaGkktaiiaa 31 
                  v++ GgGlaGl +a ++  +G+k+ai  +
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHAKGMKVAIFEQ 187
                  6899*********************9876 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   7.5e-05     0.015       1      30 [.     159     188 ..     159     194 .. 0.93
   2 ?   -2.0   0.0       1.6   3.3e+02     169     208 ..     295     334 ..     270     339 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.5e-05
    TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekd 30 
                  vlv+GgG+ Gl+ A     +g+kv+++e++
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHAKGMKVAIFEQA 188
                  79**************************97 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.6
    TIGR02352 169 ieevevqeieargekvtavktssekvqadqvvlaaGawak 208
                  +++++ +e   +g+ v+a+  +  k  ad +v a G+w++
  MMETSP1061-20121228|20504_1 295 KSRIQSFEDLGKGQGVVATLEDGTKAYADVLVGADGIWSQ 334
                  5544444444555666666666678999**********97 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.2   5.9e-05     0.012     171     202 ..     159     190 ..     153     228 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.9e-05
    TIGR01372 171 vLvvGaGpaGLaaAraAaraGarvilvdeqae 202
                  vLv+G+G aGL aA a   +G++v + ++ ++
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHAKGMKVAIFEQAST 190
                  9*************************998764 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.4   0.00049       0.1       2      43 ..     158     198 ..     157     204 .. 0.94
   2 ?   -0.8   0.0      0.61   1.3e+02     140     161 ..     318     339 ..     273     344 .. 0.83
   3 ?   -2.6   0.0       2.2   4.6e+02     254     283 ..     504     533 ..     455     541 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00049
    TIGR02023   2 dvlviGggpsGaaaaetLakagievillerelarikPCGGai 43 
                  +vlv Ggg +G  aa     +g++v+++e++ +   P GG i
  MMETSP1061-20121228|20504_1 158 RVLVAGGGLAGLVAAAACHAKGMKVAIFEQA-STYAPYGGPI 198
                  8******************************.999*****88 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.61
    TIGR02023 140 ksveadvviGaDGakskvakel 161
                  +   adv +GaDG  s++ k l
  MMETSP1061-20121228|20504_1 318 TKAYADVLVGADGIWSQIRKIL 339
                  4467999*******99987765 PP

  == domain 3    score: -2.6 bits;  conditional E-value: 2.2
    TIGR02023 254 PlkPrkrldservvLvGDaaGlvakasGeG 283
                  P + +  ++++ v+L GDa   + +  G G
  MMETSP1061-20121228|20504_1 504 PQRLLSPWAKGPVALCGDACHPMMPNLGQG 533
                  55556679999999****998888877777 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.4   0.00022     0.045       3      33 ..     158     188 ..     154     196 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00022
    TIGR01350   3 dvvviGgGpgGYvaAiraaqlglkvalveke 33 
                   v+v GgG +G vaA  +  +g+kva+ e+ 
  MMETSP1061-20121228|20504_1 158 RVLVAGGGLAGLVAAAACHAKGMKVAIFEQA 188
                  58999**********************9985 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.3   0.00028     0.057       2      32 ..     159     189 ..     158     196 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00028
    TIGR01790   2 liviGgGlAglaiAlelakpglrvqlieaap 32 
                  ++v GgGlAgl+ A++  ++g++v + e a 
  MMETSP1061-20121228|20504_1 159 VLVAGGGLAGLVAAAACHAKGMKVAIFEQAS 189
                  7899*********************998655 PP

>> TIGR02214  spoVD_pbp: stage V sporulation protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00027     0.056     467     533 ..     215     277 ..     201     283 .. 0.90

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00027
    TIGR02214 467 alekvvskGsgkdafieGyrvgGktGtaqkvkpdGgylegeyivsfvGlaPaddPkvavlvvvdnPk 533
                    e+ v+ G+ +   + G+++g + G  +k+   G y +g+++v f  l Pa +  +   vvvd P 
  MMETSP1061-20121228|20504_1 215 CYEELVAAGTVTADRVSGLKIGYRKG--NKLA--GLYDAGDWLVRFDTLGPALEAGLPATVVVDRPV 277
                  5799******************9998..4666..******************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        65  (0.0158459); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              20  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 2005.59
//
Query:       MMETSP1061-20121228|20502_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-08   31.3  36.2      3e-06   25.3   8.6    2.8  3  TIGR00880 2_A_01_02: multidrug resistance protein
    1.9e-05   22.0   5.4    1.9e-05   22.0   3.7    3.2  3  TIGR00900 2A0121: H+ Antiporter protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   8.8   4.6e-06    0.0095       1     133 [.      55     190 ..      55     197 .. 0.78
   2 ?   -2.3   0.0      0.45   9.2e+02      27      43 ..     277     293 ..     274     318 .. 0.71
   3 !   25.3   8.6   1.4e-09     3e-06       1     141 []     319     471 ..     319     471 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.6e-06
    TIGR00880   1 glllagyAlgqlvvsplsglltdrvGrkpvll....vglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwr..alflilallallafil 133
                  g+l+ +++++q+++   +g+l d  ++k + l    v++++ ++++++ a  +n+ ++++ +++qG  ++++ +  +++   i+ +  +++ +++  ++  lg  +  llG+v+a +l      lf +  + +l+    
  MMETSP1061-20121228|20502_1  55 GILFFVFGMSQFLFQAPAGYLYDYTEKKLLWLstagVLTSMLTVFTAMYASDNNFILMVLVKFIQGGVTSFIPPGLNSITQGIVGSVGMTQQVSVNEMMNHLGTAILVLLGSVVAYFLYPNigLLFAVSPIACLF---F 190
                  799*******************999999888844334567788999999999********************999999999998888888888888888888888888888888865433200233333333333...3 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.45
    TIGR00880  27 rkpvllvglfifvlsql 43 
                  r p+ll+ +++++l++ 
  MMETSP1061-20121228|20502_1 277 RDPILLLFIAVCFLFHT 293
                  56666666666666654 PP

  == domain 3    score: 25.3 bits;  conditional E-value: 1.4e-09
    TIGR00880   1 glllagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals...........snitvliiarilqGfgaaaalvagaaliadiikee.ersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllpeT 141
                  g+ +++  ++ ++++ ++g+ + ++Grk + lvgl i+ +  +++a                tv++   +l G+ga+++ ++   + +di+  +  ++  lgl  a++++g  ++  lG + aq +g    f+il++++++ ++l +f++peT
  MMETSP1061-20121228|20502_1 319 GMCITIAQVVMVFAAKICGTYSGKYGRKWLFLVGLGIVPIRCAILAGLltlkgdgeatlLWQTVTLSTQVLDGVGAGIFGTMYILVTSDISGGTgRFGLTLGLTTAAMSIGGTVSGYLGQAFAQDYGYLKAFWILCIMSTVPALLYFFFMPET 471
                  677777888899999********************99988877776445688999985522344556789**********************9999********************************************************8 PP

>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   3.7   9.4e-09   1.9e-05      15     161 ..      33     179 ..      21     206 .. 0.81
   2 ?    0.4   0.6     0.034        69      35      82 ..     317     367 ..     293     372 .. 0.71
   3 !    6.1   3.2   0.00066       1.3     213     300 ..     381     465 ..     362     472 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 9.4e-09
    TIGR00900  15 saitqvalalyvlaktgsasvlslaalagllplvvvspiaGvlvDRldrkkvmvgaDliravlvavlpfvallgleiwmvlvvalilsiaqafftpatsailPdlvpeeeltranslsqlvrslieivgPgiggllvatlgikaail 161
                   ++ ++  a++ +ak  s++++++   +  +   ++  +aG l D+ ++k +  ++  +   ++ v++++ + + +  +++ v +i + +++f  p+ ++i++ +v    +t+  s+++++  l   + + +g +++ +l +++ +l
  MMETSP1061-20121228|20502_1  33 LTMINMQSAFLIVAKGYSEKQVGILFFVFGMSQFLFQAPAGYLYDYTEKKLLWLSTAGVLTSMLTVFTAMYASDNNFILMVLVKFIQGGVTSFIPPGLNSITQGIVGSVGMTQQVSVNEMMNHLGTAILVLLGSVVAYFLYPNIGLL 179
                  45677777899999999999999999999999999999******************999999999999999888899999999*************************************988776555555555555544444433 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.034
    TIGR00900  35 vlslaalagllplvvvspiaGvlvDRldrkkv.mvgaDl..iravlvavlp 82 
                  + ++  ++  +++v+++ i G +  ++ rk + +vg  +  ir++++a l+
  MMETSP1061-20121228|20502_1 317 MSGMCITIAQVVMVFAAKICGTYSGKYGRKWLfLVGLGIvpIRCAILAGLL 367
                  445677888899999999999999999999752455544225777777665 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.00066
    TIGR00900 213 tllllallfnlvfapiisvllpyvtskvlrrssvevgvvlaafglGallGalllgllgkylkraalitiavlviglailvlgllnpnl 300
                  t++l+  ++  v+a+i+  ++ +vts+ + ++   +g++l + ++++ +G+ + g lg+ + + +    a  ++ ++ +v++ll+  +
  MMETSP1061-20121228|20502_1 381 TVTLSTQVLDGVGAGIFGTMYILVTSD-ISGGTGRFGLTLGLTTAAMSIGGTVSGYLGQAFAQDYGYLKAFWILCIMSTVPALLY--F 465
                  4556677999*****************.999999999999999999999999999999999999999999999999999998887..3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 2115.95
//
Query:       MMETSP1061-20121228|20503_1  [L=918]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (918 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 2817.81
//
Query:       MMETSP1061-20121228|20506_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1517.87
//
Query:       MMETSP1061-20121228|20507_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   38.5   0.1    8.5e-10   36.3   0.0    2.0  2  TIGR01177 TIGR01177: TIGR01177 family protein
    0.00093   16.5   0.1     0.0015   15.9   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
  ------ inclusion threshold ------
      0.037   11.2   0.1      0.073   10.2   0.0    1.4  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific


Domain annotation for each model (and alignments):
>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.25   3.4e+02      96     127 ..     162     192 ..     132     197 .. 0.69
   2 !   36.3   0.0   6.2e-13   8.5e-10     155     273 ..     247     379 ..     234     415 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.25
    TIGR01177  96 ksvdkarlekkigailkkkglkvslskpdivv 127
                  ++++k+ l++ + ++l + g +v+l++pd  +
  MMETSP1061-20121228|20507_1 162 MKIEKTGLDA-LKDLLIRLGGRVNLEEPDCKI 192
                  3446666654.566666667799999998765 PP

  == domain 2    score: 36.3 bits;  conditional E-value: 6.2e-13
    TIGR01177 155 pdrRpFfkPgslsPklaRalvNlarvkegdrvlDPfcGTGgilIEAgLl..GikviglDidekmveGariNLehYgied....fkvkrldakklplr...s.....esvdaiatDpPYgrstkaagekleeLy 273
                  p++R  +   +l+P  a +l+N+ar+k+gd++lDP+ G    l+ A+++   ++ +g+ i+ +         e +  ++     +++ +d + + +r   +     + +dai+ DpPYg+  +++ +++  L 
  MMETSP1061-20121228|20507_1 247 PTERICVTNTPLEPIAAFCLCNIARIKAGDKILDPYAGSCTTLLAAAMIvpDAETVGIEIAHNGLVNREHIAEDFSSRNlrlpNQIIHGDSTSVFVRetaKeavnhQPFDAIIADPPYGIRESVGYNDNSPLE 379
                  77777888899************************************99555888888876553322233334455544443457778888887776434134445889***********9988877665553 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   1.1e-06    0.0015      83     166 ..     271     364 ..     263     376 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 1.1e-06
    TIGR03534  83 elkkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke....veflksdlleal........eekgkfdlivsNPPY 166
                  ++k  +  k+lD  +Gs +  la a  +pda+ ++++i ++ l   ++ a+    ++     +++++d ++ +         +++ fd i++ PPY
  MMETSP1061-20121228|20507_1 271 RIKAGD--KILDPYAGSCTTLLAAAMIVPDAETVGIEIAHNGLVNREHIAEDFSSRNlrlpNQIIHGDSTSVFvretakeaVNHQPFDAIIADPPY 364
                  556666..9**********************************88888777777777777899******87777766665557788********** PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   5.3e-05     0.073      96     200 ..     249     365 ..     242     373 .. 0.72

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 5.3e-05
    TIGR03533  96 ervlvPRspiaelieeefapllekeevkrvldlctGsGClaiaaaeafpeaevdavDisedaL....evaee.nieeyeledrveliqs.dlf......ealegkkydlivsnPPYv 200
                  er+ v   p++ + +  + ++ + ++ +++ld  +Gs    +aaa   p+ae   ++i+++ L    ++ae    ++ +l +++    s  +f      ea++++ +d i+++PPY 
  MMETSP1061-20121228|20507_1 249 ERICVTNTPLEPIAAFCLCNIARIKAGDKILDPYAGSCTTLLAAAMIVPDAETVGIEIAHNGLvnreHIAEDfSSRNLRLPNQIIHGDStSVFvretakEAVNHQPFDAIIADPPYG 365
                  67777777777777777777778888899********8888999999**************99333223332123344566665544331456444443678999***********6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2006.23
//
Query:       MMETSP1061-20121228|20505_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   18.2   0.0    0.00031   16.8   0.0    1.6  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
    0.00023   18.5   0.0     0.0005   17.4   0.0    1.6  2  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.5e-07   0.00031     178     264 ..      70     143 ..      45     162 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.5e-07
    TIGR04075 178 ekGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlv..msmvkagaalcvpGnheek 264
                   + P  i GdvhG + +l +l+e  G+               p   + +flGd+vdrG++s +++ l    ++    + ++++Gnhe  
  MMETSP1061-20121228|20505_1  70 LEAPIKICGDVHGQYYDLLRLFEYGGF---------------PPDSNYIFLGDYVDRGKQSLETICLLlaYKIKYPENFFVLRGNHECA 143
                  567889999999999999888887777...............3445689************9987655114555667778889***965 PP

>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   2.4e-07    0.0005       5      52 ..      76     122 ..      73     206 .. 0.80
   2 ?   -2.8   0.0      0.35   7.2e+02      59      77 ..     247     265 ..     243     287 .. 0.71

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 2.4e-07
    TIGR00668   5 ligdlhgcydelqlllervefdpakdtlyltgdlvargdkslevlryv 52 
                  + gd+hg y +l  l+e   f p  + ++l gd v rg++sle++ ++
  MMETSP1061-20121228|20505_1  76 ICGDVHGQYYDLLRLFEYGGFPPDSNYIFL-GDYVDRGKQSLETICLL 122
                  68*********************9999987.9**********976543 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.35
    TIGR00668  59 vrlvlgnhdlhllavalgi 77 
                  v   l  hdl l++ a ++
  MMETSP1061-20121228|20505_1 247 VAQFLHKHDLDLICRAHQV 265
                  5567889999999877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1715.86
//
Query:       MMETSP1061-20121228|20509_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00052   15.7   5.4    0.00057   15.6   3.7    1.1  1  TIGR02680 TIGR02680: TIGR02680 family protein
     0.0011   14.6   9.5     0.0012   14.5   6.6    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0035   12.9  10.1     0.0039   12.7   7.0    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.016   12.3   4.5      0.017   12.2   3.1    1.2  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
      0.016   11.5   4.9      0.019   11.2   3.4    1.1  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
      0.051    9.9   9.4      0.056    9.7   6.5    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
      0.083   10.1   9.5       0.02   12.2   3.2    2.0  2  TIGR02830 spore_III_AG: stage III sporulation protein AG
       0.14    9.0   8.5       0.16    8.7   5.9    1.1  1  TIGR00414 serS: serine--tRNA ligase
       0.31    7.9  10.9       0.33    7.8   7.5    1.2  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family
        5.7    4.8  12.6         13    3.6   8.7    1.7  1  TIGR03741 PRTRC_E: PRTRC system protein E


Domain annotation for each model (and alignments):
>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   3.7   1.4e-06   0.00057     866     922 ..      84     140 ..      50     145 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.4e-06
    TIGR02680 866 levavrelreaaeeaaeqreraeraeseareaaedaaearaeaeeaslrlraleesv 922
                  l++   e r+ +e+a+++ +ra++ae++a++a+e+a++a+++a ea+++l+++ e v
  MMETSP1061-20121228|20509_1  84 LKQINEENRKLEERAKKAEARADKAEKRADKAEEKAEKAEKKATEAEAKLEKVLENV 140
                  667788899999999999999999999999999999999999999999999887655 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   6.6   2.9e-06    0.0012     261     343 ..      55     137 ..      26     146 .. 0.37

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.9e-06
    TIGR02168 261 elkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaele 343
                  e++ ++ + ++ r    +l+ +  +++k l+++++e ++le++ +++++r +++ek  +++ee+ e++e+k +e+e++l+++ 
  MMETSP1061-20121228|20509_1  55 EADSKDGSSNKNRWSLGNLKGNPVTVDKLLKQINEENRKLEERAKKAEARADKAEKRADKAEEKAEKAEKKATEAEAKLEKVL 137
                  22222222222222222222222222222222222222222222222222222222222222222222222222222222222 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   7.0   9.4e-06    0.0039     320     935 ..      58     141 ..      26     147 .. 0.39

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 9.4e-06
    TIGR02169 320 daeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasieGvlGtvaqLgkveerYalAiEvAaGnrlnnvVVeddavAkeaIellkerkagratFLPLnkmrskerdlsilaedGvidfavdlvefdekyepvvkyvlgdTlvvedleaarrlmgkfRlVtLeGellekSGaitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeels 935
                    +  ++k    + +lk +   +++ +++ + e +kl+e+ k+++++ ++ ++++++ +++a+++ ++  e++ klek+                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     e+++
  MMETSP1061-20121228|20509_1  58 SKDGSSNKNRWSLGNLKGNPVTVDKLLKQINEENRKLEERAKKAEARADKAEKRADKAEEKAEKAEKKATEAEAKLEKVL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ENVN 141
                  22222223333333333333333333333333333333333333333333333333333333333333333333333333....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3333 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.1   4.1e-05     0.017      60     120 ..      73     133 ..      27     146 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.1e-05
    TIGR01347  60 kegdtvesgevlaeleessaaaeaasekskeekeekaaakaek.akeaaekkkalspaarkl 120
                   +g+ v++++ l +++e++ + e+ ++k++++ ++ka ++a+k +++a++++k++++a +kl
  MMETSP1061-20121228|20509_1  73 LKGNPVTVDKLLKQINEENRKLEERAKKAEAR-ADKAEKRADKaEEKAEKAEKKATEAEAKL 133
                  57899***********9887776666554433.33344444431333333445555555553 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   3.4   4.7e-05     0.019     200     259 ..      87     146 ..      69     149 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.7e-05
    TIGR03185 200 keeleseieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGge 259
                   +e++ ++e+  ++ ea+  + e++ ++++++ ++++k+++eae kle++ ++++s Gg+
  MMETSP1061-20121228|20509_1  87 INEENRKLEERAKKAEARADKAEKRADKAEEKAEKAEKKATEAEAKLEKVLENVNSIGGS 146
                  344555677888889999999999999999999999999999999999999999999986 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   6.5   0.00014     0.056      52     141 ..      47     136 ..      22     147 .. 0.50

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00014
    TIGR03319  52 alleakeevkklreelekelkerrkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLeki 141
                   + + k+e    ++   ++ +    +l+ +   +++  ++++++++kle++ ++ e + ++ e+++ + eek e++e++ +e +++Lek+
  MMETSP1061-20121228|20509_1  47 SISKRKTEEADSKDGSSNKNRWSLGNLKGNPVTVDKLLKQINEENRKLEERAKKAEARADKAEKRADKAEEKAEKAEKKATEAEAKLEKV 136
                  444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 PP

>> TIGR02830  spore_III_AG: stage III sporulation protein AG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.1      0.16        64      99     112 ..      48      61 ..      21      75 .. 0.61
   2 ?   12.2   3.2   4.8e-05      0.02      28      80 ..      89     147 ..      78     150 .] 0.58

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.16
    TIGR02830  99 kkqqtTeEtdkegg 112
                   ++++TeE+d++ g
  MMETSP1061-20121228|20509_1  48 ISKRKTEEADSKDG 61 
                  34555666665444 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 4.8e-05
    TIGR02830  28 eee....eseeeekekeekeev..ksekqkedeiedyekeleeeLkeiLekieGvgdve 80 
                  ee+    e++++++++++k+e+  ++ ++k ++ e++++e e++L+++Le+++ +g  +
  MMETSP1061-20121228|20509_1  89 EENrkleERAKKAEARADKAEKraDKAEEKAEKAEKKATEAEAKLEKVLENVNSIGGST 147
                  3333444333333333333333003333444468899999************9998665 PP

>> TIGR00414  serS: serine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.9    0.0004      0.16      37     109 ..      71     143 ..      35     148 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0004
    TIGR00414  37 dklkkllskieelqkkrnelskeigkkkaekkdkieelkkelkelkeeleeleaelkeleeeleekllkipnl 109
                   +lk + +++++l k+ ne +++++++ ++ ++++++ +k+ ++++e+ e++e++  e+e++le++l ++  +
  MMETSP1061-20121228|20509_1  71 GNLKGNPVTVDKLLKQINEENRKLEERAKKAEARADKAEKRADKAEEKAEKAEKKATEAEAKLEKVLENVNSI 143
                  3456677788889999999999999966666666788899999999999999999999999999998877665 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8   7.5   0.00081      0.33       8      55 ..      84     133 ..      41     147 .. 0.56

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.00081
    TIGR01554   8 laelakelkkltedekeeeaeeekkekda..lkaeidkleaeierleeaa 55 
                  l++ ++e +kl+e  k++ea+++k+ek a  ++++ +k e++  ++e+++
  MMETSP1061-20121228|20509_1  84 LKQINEENRKLEERAKKAEARADKAEKRAdkAEEKAEKAEKKATEAEAKL 133
                  23333333333333333333332221111113344444444433333332 PP

>> TIGR03741  PRTRC_E: PRTRC system protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   8.7     0.032        13      63     105 ..      83     125 ..      75     135 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.032
    TIGR03741  63 alkqyveareslaeqvaatravleaaaakeaeaakakkaakkk 105
                   lkq+ e  + l e++++++a +++a++++ +a++++++a+kk
  MMETSP1061-20121228|20509_1  83 LLKQINEENRKLEERAKKAEARADKAEKRADKAEEKAEKAEKK 125
                  68999999****************9999999998877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       569  (0.138713); expected 82.0 (0.02)
Passed bias filter:                      317  (0.0772794); expected 82.0 (0.02)
Passed Vit filter:                        62  (0.0151146); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 565.67
//
Query:       MMETSP1061-20121228|20510_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-33  112.0   0.2    8.1e-33  111.7   0.2    1.1  1  TIGR00266 TIGR00266: TIGR00266 family protein


Domain annotation for each model (and alignments):
>> TIGR00266  TIGR00266: TIGR00266 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  111.7   0.2     2e-36   8.1e-33      12     203 ..     104     304 ..      94     322 .. 0.88

  Alignments for each domain:
  == domain 1    score: 111.7 bits;  conditional E-value: 2e-36
    TIGR00266  12 svleltLkpgeevlvetgalvsmdrsvelktelkGGlLdalkrsllgeslflnaftae...qsegslqLapalpGdiirllete..kgillqsgaflassegveidtkfaglkt..ffadeglFlLklqgkGdlflssyGaleqlsvn..eslvvdtdhivaFedtLdykvskqvdglkgdvlsGkGlv.aefkGkGkvylq 203
                   ++ ++L+pg+ + +e+ga+++m ++v ++t ++GGl +++kr+l g+++f+  +  e      g++ L+  +p  i rl   e  + ++ q ga l +s++++i+++f+   t  ff++eg  l  l g+Gd+fl   G+l +++++  e+l++ ++ +v F +++dy v+  v+g+   v +G+Gl  ++++G G v+l 
  MMETSP1061-20121228|20510_1 104 QIVTVRLEPGQVLRAESGAMMYMTEHVTINTTTGGGLSEGFKRMLTGQNFFVSDYAYEgppGTAGTVALGTDFPAKILRLNVEEygGKLVCQQGALLCCSHTIDIQMEFTKTMTggFFGGEGFILQALTGTGDVFLKAGGTLIRRDLEegEELRISSGCLVGFSEGVDYDVQM-VKGFTNVVGGGEGLFmTTLTGPGVVWLS 304
                  57899************************************************9887644567899*************655441156999******************9876555**************************9988652279*********************.9************96268********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.46
# Mc/sec: 1067.39
//
Query:       MMETSP1061-20121228|20512_1  [L=872]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 3288.41
//
Query:       MMETSP1061-20121228|20508_1  [L=280]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-16   57.7   0.8    8.1e-16   56.1   0.5    1.6  1  TIGR02798 ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
    3.9e-05   21.4   0.1    5.9e-05   20.8   0.1    1.3  1  TIGR01935 NOT-MenG: RraA family
  ------ inclusion threshold ------
      0.014   13.3   0.0      0.024   12.6   0.0    1.3  1  TIGR02998 RraA_entero: regulator of ribonuclease activity A


Domain annotation for each model (and alignments):
>> TIGR02798  ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.1   0.5   5.9e-19   8.1e-16      67     193 ..     102     228 ..      54     236 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.1 bits;  conditional E-value: 5.9e-19
    TIGR02798  67 hvaaeqlkegdvvvaavtaesedgyfgdllatslqargargliidagvrdvrdlkemdfpvwskaisa.kgtvkatlgsvnipvvvanalvnpgdvvvadddgvvvvpaakaeavleaaqareaneed 193
                  + a e   + +v+v+++  ++e    gd+    l+ r   gl+ d+ vrd  ++ +  fp +s++ +a +g         n  + v+++ v pgd ++ d+dgvvvvp ++a++v   a+ re  e+ 
  MMETSP1061-20121228|20508_1 102 YEAFELCGPNEVLVMSSVGPAE-SVGGDIKFLRLKQRDIGGLVTDGSVRDTDEIINYGFPCFSNSTTArQGPAAMQPWECNGVISVSGVTVRPGDAIIGDQDGVVVVPSKVADKVYSIAHGREVIEDI 228
                  4567777788899998888876.5789*************************************998835666667788999999**************************************99875 PP

>> TIGR01935  NOT-MenG: RraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.1   4.3e-08   5.9e-05      77     149 ..     133     206 ..     103     207 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 4.3e-08
    TIGR01935  77 laeengWeGvivnGavrdvaelaeldlGvkalaasPlks.ekkgaGevdvpvtlagvtikpgeyvyaDedGilv 149
                    ++ +  G++  G+vrd++e+ +      + +++ ++     +  e +  + ++gvt++pg+ + +D+dG++v
  MMETSP1061-20121228|20508_1 133 RLKQRDIGGLVTDGSVRDTDEIINYGFPCFSNSTTARQGpAAMQPWECNGVISVSGVTVRPGDAIIGDQDGVVV 206
                  44667889**************88888777777776665145667899************************99 PP

>> TIGR02998  RraA_entero: regulator of ribonuclease activity A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.8e-05     0.024      53     155 ..     106     208 ..     101     213 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.8e-05
    TIGR02998  53 eengtgkvllidgggsvrralidlelaqlavenewegivvygavrqvdeleeldigiqala.aipvaadeegigesdiavnfagvtlldddyiyadntgiilse 155
                  e  g ++vl++   g +     d+++ +l  + +  g+v  g+vr+ de+ +      + + +   + +  +  e +  +  +gvt+ ++d i  d+ g+++ +
  MMETSP1061-20121228|20508_1 106 ELCGPNEVLVMSSVGPAESVGGDIKFLRLK-QRDIGGLVTDGSVRDTDEIINYGFPCFSNStTARQGPAAMQPWECNGVISVSGVTVRPGDAIIGDQDGVVVVP 208
                  556778899999999888888899999885.67899************99776655433330233344455556888889********************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (280 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 1759.85
//
Query:       MMETSP1061-20121228|20514_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       294  (0.0716724); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1482.68
//
Query:       MMETSP1061-20121228|20513_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-06   23.9  88.6    0.00025   16.7  25.8    2.0  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    4.5e-06   22.5  87.1     0.0015   14.1  23.1    2.2  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7  25.8   1.2e-07   0.00025     322     492 ..     102     277 ..      93     284 .. 0.85
   2 !   12.3  34.8   2.5e-06    0.0051     215     490 ..     265     538 ..     260     556 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.2e-07
    TIGR02169 322 eerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkeklek....lkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedle.kaekelrklkeeleklekelselere 492
                  ++    ++ +++ l++ + +le++ +ee  +r+ l+++ k+l+e   +  ++le++ ++ +elr+e++elk+ +e       +e+  +++e + ++e ++ ++ee++ + ++l r+ee+  e e+ +++l +e++k ++ l+ ++++ + k+++ +   ++e+ +l+++l+++e++
  MMETSP1061-20121228|20513_1 102 QRITSVLQRKVHTLEASHGDLEKRFQEELHQRTTLEAAHKKLAEIKTQQTSQLEQITASRDELRDESAELKKTIETervrHSSEIARMETEAKTMIESQRAKDEEIEMMTKKLRRKEERYLESESLVKSLTKEVEKLNTDLKATQQKHKaKMQSAVDGYTQEITSLKEKLQKMESN 277
                  55556678899999***********************************************************99722223567778889999999999999***********************************999999887654156666666788888888888887764 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 2.5e-06
    TIGR02169 215 keLkkekreleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeek.......kereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelsele 490
                    Lk++++++e   ++ + ++ ++  e+i  +l++++ +++ +++e +e++++le+ ++kl++  +++ k g+e   ++    +e++  +++le++  +  +  e+    l+ +    d+l+ e+eeler++++ +        e      + +++  e  e++++ ++ +k+ + ++++l++ + +le lke+l+e +    r   e ++l+ el e +  +e+++ k++  e +  +  ee++++++k + l++ ++++e+ +    ee+e++ek++ ++ 
  MMETSP1061-20121228|20513_1 265 TSLKEKLQKMESN-RVDKTKKDKAGTEQIYTQLQQIQIDMNRMKQEHSEKKEKLESGNAKLRDDLTELAKRGSESVQQLMDATNEVTLLQKQLEETHTARISSEEK----LQDQIIACDALRIEKEELERRLRDTEdligkkhLEDSGGAVAPESKTVEKTESEQDGDDSEKKLKSVQKQLEKTQMELEGLKENLDEAE----RIEFENEKLQRELYENERIIEQLRRKLEVSELSNSNRLEEVATHREKSRMLEDYVQELEDGYGGEGEEIEEIEKKRDNSD 538
                  5789999999865.678888889999************************************************99888777777776666666666555555544....55555555555555666666655544110000043333333344444445555566666666667777777777777777777776666....777788999999999999999999999999999999999**********************************9987765 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8  32.4     9e-07    0.0018     711     932 ..     107     323 ..      98     326 .. 0.60
   2 !   14.1  23.1   7.3e-07    0.0015     683     922 ..     323     558 ..     321     565 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 9e-07
    TIGR02168 711 eleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieel.eeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelr 932
                   l+ ++++l++   +le++++e+  +  +le+ +++l+e  +q+ ++le+++++r el++e +e+   +k+ e+e+++ ++ei+++++e+k+  e+ +++ +e++   +++++keer+ ++e+ +++l+ke+e+l+  ++ + +++ ++++++++ +++e++ l+e+l++++ ++     + ++ ++  e+  ++l++++ +++++++e++e++ekl++ +++
  MMETSP1061-20121228|20513_1 107 VLQRKVHTLEASHGDLEKRFQEELHQRTTLEAAHKKLAEIKTQQTSQLEQITASRDELRDESAEL---KKTIETERVRHSSEIARMETEAKTMIESQRAKDEEIEMMTKKLRRKEERYLESESLVKSLTKEVEKLNTDLKATqQKHKAKMQSAVDGYTQEITSLKEKLQKMESNR---VDKTKKDKAGTEQIYTQLQQIQIDMNRMKQEHSEKKEKLESGNAK 323
                  45566666666666666677766666666666666666666666666666666666665544444...36666777777777777777777777777777777777777777777777777777777777777776665544034455666667777777777777776666665...334444444455666666666666666666666666666655444 PP

  == domain 2    score: 14.1 bits;  conditional E-value: 7.3e-07
    TIGR02168 683 eleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleel 922
                  +l+ +++el+++ +e  ++l ++ +e + l+++le+ +++  ++e+kl+++    ++l+ e e+le+rl+++e+ + + + e +  + + e+++ e+ e+e++ ++ e++++  +++l++++ +l+ l+++l+ ++++e+++     e+l++e+ + e+ +e+l++++e  e + ++  +e+++ +e+ + le+ ++el++ +  + e+++e+++++++ +++  +  +k+ +++ ++e+ 
  MMETSP1061-20121228|20513_1 323 KLRDDLTELAKRGSESVQQLMDATNEVTLLQKQLEETHTARISSEEKLQDQIIACDALRIEKEELERRLRDTEDLIGKKHLEDSGGAVAPESKTVEKTESEQDGDDSEKKLKSVQKQLEKTQMELEGLKENLDeAERIEFEN-----EKLQRELYENERIIEQLRRKLEVSELSNSNRLEEVATHREKSRMLEDYVQELEDGYGGEGEEIEEIEKKRDNSDDDDSTSPRKRLKMRIDIENE 558
                  6788888888888888888999999999999999999999999999999999999999999999999999999888888888888888888888888888888888888888888888888888888888888777777775.....6788888888888888888888888888888888888888888888888888888888888888888888888888888777777777666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       674  (0.16431); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.80u 0.17s 00:00:00.97 Elapsed: 00:00:00.63
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|20516_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1401.60
//
Query:       MMETSP1061-20121228|20517_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-64  213.4   0.0    2.8e-61  205.0   0.0    2.0  1  TIGR02317 prpB: methylisocitrate lyase
    1.2e-44  150.6   0.0    1.3e-42  143.8   0.0    2.1  1  TIGR02319 CPEP_Pphonmut: carboxyvinyl-carboxyphosphonate phosphorylmutase
    1.9e-19   67.7   0.0    8.9e-18   62.2   0.0    2.0  1  TIGR02321 Pphn_pyruv_hyd: phosphonopyruvate hydrolase
      2e-19   67.5   0.0    1.5e-17   61.4   0.0    2.1  1  TIGR02320 PEP_mutase: phosphoenolpyruvate phosphomutase
    5.3e-16   55.9   0.1    7.4e-16   55.4   0.1    1.2  1  TIGR01346 isocit_lyase: isocitrate lyase


Domain annotation for each model (and alignments):
>> TIGR02317  prpB: methylisocitrate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.0   0.0   3.4e-64   2.8e-61      11     276 ..      50     344 ..      41     349 .] 0.85

  Alignments for each domain:
  == domain 1    score: 205.0 bits;  conditional E-value: 3.4e-64
    TIGR02317  11 kedilqipGainalvallaekaGfeavYlsGaalaaslglPDlglttleevaeearri.....................trvtklpllvDaDtGfGealnvartvkeleeagvaavhieDqvapkkCGhldgkelvskeemvkkikaavkakkd..edf......vliaRtDaraveGldaaieRakaYveaGadaiftealeseeefrefakavkvpllanmtefGktplltadeleelgykiviyPvtalRaalkaaekvyeelkkkGtqkelldklqtRkelYellgyedye 276
                  ++++l +p  +++l+a l+ +aGfea ++ G ++aa  g+PD  l++  e+  +++++                     t++  +p + D DtG+G+a+nv+rtv    +ag+a+v ieDqvapk+CGh  gk++v  +e+v++++aa +a+ +   +f      +++aRtDa  ++G++a ieR+ a+ eaG d+ f ea e+ e+ +e++++v+ p lanm e G tp+l+ +el+++gy+++ yP+t l  + ka+++ +++lk+   + +++ ++q  k++    +y + e
  MMETSP1061-20121228|20517_1  50 SDKPLILPCCYDGLTARLVARAGFEATFMTGFGVAAVHGYPDTQLVSYGEMQSQTNTVaeglssvalemgsssssttttTTTEPIPCIADGDTGYGNAVNVKRTVAGYGRAGMAGVMIEDQVAPKRCGHVAGKSIVPFDEAVARVRAACDARDEfeAQFghgtgpLILARTDALKTDGFEAGIERCLAFKEAGCDMTFLEAPETIEQMQEYCRRVPGPKLANMLEQGSTPVLSPQELKKIGYTMAAYPLTLLSSSIKAMNESLQRLKDGEPTDDIISTFQDTKDVVGFTSYAKEE 344
                  5789999************************************9998877666555441111111111122111111112334599******************************************************************75213345555668*****************************************************************************************************9999999999999988776666665544 PP

>> TIGR02319  CPEP_Pphonmut: carboxyvinyl-carboxyphosphonate phosphorylmutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.8   0.0   1.6e-45   1.3e-42      17     250 ..      53     314 ..      43     330 .. 0.81

  Alignments for each domain:
  == domain 1    score: 143.8 bits;  conditional E-value: 1.6e-45
    TIGR02319  17 ilvvpsaydalsakviqqagfpavhmtgsgtsasmlglpdlgftsvseqain.......lknivl..............avdvpvimdadagygnamsvwratrefervgivgyhledqvnpkrcghlegkrlisteemtgkieaaveareded..ft......iiartdaresfgldeairrsreyvaagadcifleamldveemkrvrdeidapllanmveggktpwlttkelesigynlaiyplsgwmaaasvlrklfte 250
                   l++p +yd l+a+++ +agf a  mtg g + ++ g pd  + s  e   +       l  + l              +  +p i d d+gygna+ v r+   + r g+ g  +edqv pkrcgh+ gk ++  +e   ++ aa +ar++ +  f       i+artda ++ g++  i r   +  ag+d  flea   +e+m+     +  p lanm+e g tp l+ +el+ igy +a ypl+   ++   +   +  
  MMETSP1061-20121228|20517_1  53 PLILPCCYDGLTARLVARAGFEATFMTGFGVA-AVHGYPDTQLVSYGEMQSQtntvaegLSSVALemgsssssttttttTEPIPCIADGDTGYGNAVNVKRTVAGYGRAGMAGVMIEDQVAPKRCGHVAGKSIVPFDEAVARVRAACDARDEFEaqFGhgtgplILARTDALKTDGFEAGIERCLAFKEAGCDMTFLEAPETIEQMQEYCRRVPGPKLANMLEQGSTPVLSPQELKKIGYTMAAYPLTLLSSSIKAMNESLQR 314
                  5899**************************86.578****98888766332200111112223221122221111111134589******************************************************************874312423345559*********************************************************************************98766666555555555 PP

>> TIGR02321  Pphn_pyruv_hyd: phosphonopyruvate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   1.1e-20   8.9e-18      21     273 ..      58     335 ..      42     348 .. 0.75

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 1.1e-20
    TIGR02321  21 aahnplvaklaeeagfggiwgsgfelsasyavpdanils...m............sthlemmraiaatvs......ipliadidtgfgnavnvhyvvpqyeaagasaivmedktfpkdtslraegrqelvrieefqgkvaaaaaarkdrd..f......vviarvealiaglgqdeavrrglayeeagadailihskqktpdeilafvkawpgkk.plvlvptaypqlteadiaalskvgvviygnhairaavgavrevfarirrdqgirevdaalpsvkeii 273
                  ++++ l+a+l  +agf   + +gf ++a +  pd++++s   m            s  lem  + ++t +      ip iad dtg+gnavnv+  v  y  ag + +++ed+  pk     a g + +v  +e   +v aa+ ar + +  f      +++ar +al    g +  + r la++eag+d  ++ +   t +++  + +  pg k   +l   + p l+ +++  ++   +  y    + +++ a+ e + r++  +   ++ +++   k+++
  MMETSP1061-20121228|20517_1  58 CCYDGLTARLVARAGFEATFMTGFGVAAVHGYPDTQLVSygeMqsqtntvaeglsSVALEMGSSSSSTTTttttepIPCIADGDTGYGNAVNVKRTVAGYGRAGMAGVMIEDQVAPKRCGHVA-G-KSIVPFDEAVARVRAACDARDEFEaqFghgtgpLILARTDALK-TDGFEAGIERCLAFKEAGCDMTFLEAP-ETIEQMQEYCRRVPGPKlANMLEQGSTPVLSPQELKKIGY-TMAAYPLTLLSSSIKAMNESLQRLKDGEPTDDIISTFQDTKDVV 335
                  567889*****************************999833322222222222212357776654443322233349****************************************988654.4.579*****************8754224445454799*****96.5799****************9998875.6888999999999995515667778889998888766654.35678888888888888888888876666655555555555555 PP

>> TIGR02320  PEP_mutase: phosphoenolpyruvate phosphomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   0.0   1.8e-20   1.5e-17      73     280 ..     129     338 ..      50     342 .. 0.75

  Alignments for each domain:
  == domain 1    score: 61.4 bits;  conditional E-value: 1.8e-20
    TIGR02320  73 ldvttiPiilDgDtG.GkvehlrllvrklerrgvsaviiEDKvglKknsllgeevkqelasveeFcekikagkdaqtd..edf......viiARvEslilekgledAleRaeaYaeaGADailiHsrkkdaeeileFarefrkkkkkvplvivPtsynevstdelaeagisvviyAnhllRaavaamqkvaeeileeervlevedkvasikeileli 280
                  + +  iP i DgDtG G++ +++++v    r+g+++v+iED+v +K+   +  +   +    +e   +++a++da+ +   +f      +i+AR+++l +  g+e  +eR+ a+ eaG D  ++ +  ++ e+++e++r+     +k+  ++   s   +s +el+++g +++ y   ll ++++am++  +++ + e + ++ +++   k+++ ++
  MMETSP1061-20121228|20517_1 129 TTTEPIPCIADGDTGyGNAVNVKRTVAGYGRAGMAGVMIEDQVAPKRCGHVAGK---SIVPFDEAVARVRAACDARDEfeAQFghgtgpLILARTDALKT-DGFEAGIERCLAFKEAGCDMTFLEA-PETIEQMQEYCRRVPG--PKLANMLEQGSTPVLSPQELKKIGYTMAAYPLTLLSSSIKAMNESLQRLKDGEPTDDIISTFQDTKDVVGFT 338
                  22224788***************************************8776665...677788889999999998865224445454557*******966.59*****************999976.5678999999999999..777778888899999**************************************9999999999999987665 PP

>> TIGR01346  isocit_lyase: isocitrate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.1   9.1e-19   7.4e-16     100     236 ..      89     224 ..      58     235 .. 0.68

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 9.1e-19
    TIGR01346 100 gPdladyPadtvPnkverlfkallfhdrkqkearskakdeeelkelyidylvPivadadaGfGGvlavfkltkllierGaagvhledqlssekkCGhlaGkvlvpvqehvnrlvaarlaadvm......gvetllvartdaea 236
                  +Pd  +  +  + ++ + + + l     +++e +s++++     ++     +P +ad+d+G+G +++v + +  +  +G agv +edq++  k+CGh+aGk +vp +e+v r+ aa  a d        g+  l++artda  
  MMETSP1061-20121228|20517_1  89 YPDTQLVSYGEMQSQTNTVAEGLS---SVALEMGSSSSST---TTTTTTEPIPCIADGDTGYGNAVNVKRTVAGYGRAGMAGVMIEDQVA-PKRCGHVAGKSIVPFDEAVARVRAACDARDEFeaqfghGTGPLILARTDALK 224
                  566555555555555555444443...3344444444444...22223334699**********************************98.599*******************998766664411121245679999999965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 1771.70
//
Query:       MMETSP1061-20121228|20515_1  [L=1021]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1021 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       730  (0.177962); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.15u 0.18s 00:00:01.32 Elapsed: 00:00:00.69
# Mc/sec: 1953.06
//
Query:       MMETSP1061-20121228|20518_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-16   58.5   0.0    4.9e-16   57.0   0.0    1.7  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    9.5e-09   32.7   0.1    2.1e-08   31.6   0.1    1.5  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.3e-06   25.0   0.0    1.7e-06   24.6   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    2.7e-06   24.9   0.0    9.4e-06   23.1   0.0    1.8  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    6.2e-06   23.7   0.1    1.1e-05   22.9   0.1    1.4  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    7.1e-06   23.7   0.0    1.4e-05   22.8   0.0    1.5  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    0.00013   19.3   0.1    0.00044   17.6   0.0    1.8  2  TIGR02415 23BDH: acetoin reductases
     0.0074   13.8   0.1      0.012   13.1   0.1    1.3  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
     0.0078   13.5   0.1      0.011   13.0   0.0    1.2  1  TIGR01500 sepiapter_red: sepiapterin reductase
  ------ inclusion threshold ------
      0.017   12.3   0.1      0.024   11.8   0.1    1.3  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
       0.02   11.7   0.2      0.029   11.2   0.1    1.1  1  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
      0.039   10.9   0.1      0.054   10.5   0.0    1.2  1  TIGR00507 aroE: shikimate 5-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.0   0.0   1.4e-18   4.9e-16       4     124 ..      94     229 ..      91     249 .. 0.81
   2 ?   -1.9   0.0       1.2     4e+02     189     211 ..     281     303 ..     263     331 .. 0.67

  Alignments for each domain:
  == domain 1    score: 57.0 bits;  conditional E-value: 1.4e-18
    TIGR01289   4 ptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslgl.......pkds..ytil..kldlasldsvrkfveqfres..grsldalvcnaavylpllk...eplfsadgyelsvatnhlghfllsnll 124
                  +t+++tga sg g + a al+  g  hv macr+  +++ aa+s+         +k s   +i+   +d +sl+s+r+f ++f +s  g +ld+l  na v +   +   +   s+dg e+  atn +gh l+ +ll
  MMETSP1061-20121228|20518_1  94 QTALVTGANSGTGYEVALALARLG-VHVTMACRNAARCNAAAESIRSdptvverSKSSsaSAIVteSVDTSSLKSIRNFCDRFIASsaGAPLDMLFLNAGVGVIGRDadgNLSLSTDGIEMIFATNVVGHHLMYKLL 229
                  799*********************.*****************99753111112122221134553369***************8753378**********987654411245689******************9998 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.2
    TIGR01289 189 aykdsklcnmltvrelhrryhde 211
                   y +skl+++l ++el  r   e
  MMETSP1061-20121228|20518_1 281 RYPQSKLAQILWAQELTARIDGE 303
                  68899999999999999998655 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.1   6.1e-11   2.1e-08       2      89 ..      94     194 ..      93     199 .. 0.70

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 6.1e-11
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakelee...........aggevlalkadvtkeeeiadlieavaaefgs..ldiLvnnAGiq 89 
                  ++alvtGa+sG g+++a +la+ G++v++   +++ ++aaa+++++           ++  +++ ++d ++ ++i++  ++  a+ ++  ld+L  nAG+ 
  MMETSP1061-20121228|20518_1  94 QTALVTGANSGTGYEVALALARLGVHVTMACRNAARCNAAAESIRSdptvverskssSASAIVTESVDTSSLKSIRNFCDRFIASSAGapLDMLFLNAGVG 194
                  89******************************988888888776541111111111022334455678888888888887755443321379999999986 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.9e-09   1.7e-06     411     530 ..      90     224 ..      85     259 .. 0.69

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.9e-09
    TIGR02632 411 elarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdk.fGadkava........lkldvtdeeavkaafaevalayGG..vdivvnnaGiav.skpleete...leeWdlnldilatGyfl 530
                   l ++ alvtG+ sG G eva+ l+  G hv +a  +a++ +a a+ + +     +++ +          +d  + +++++  +    +  G  +d++  naG+ v  ++ ++     ++  ++ ++ ++ G++l
  MMETSP1061-20121228|20518_1  90 RLVGQTALVTGANSGTGYEVALALARLGVHVTMACRNAARCNAAAESIRSDpTVVERSKSssasaivtESVDTSSLKSIRNFCDRFIASSAGapLDMLFLNAGVGViGRDADGNLslsTDGIEMIFATNVVGHHL 224
                  688999**********************************99999988632122222222333444334567777777777776644433333489999999986414555554321133445555666666655 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   2.7e-08   9.4e-06       1     109 [.      91     199 ..      91     255 .. 0.84
   2 ?   -1.0   0.0      0.61   2.1e+02     191     211 ..     316     336 ..     311     379 .. 0.77

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 2.7e-08
    TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveef.G.rldvvvanaGvlsygra 109
                  l G+ al+tGa  G G   a++la+ G  +     c++ ++  + + + r d  +  +   +    ++++ +d  +l+ +r+  ++ ++   G  ld++  naGv  +gr 
  MMETSP1061-20121228|20518_1  91 LVGQTALVTGANSGTGYEVALALARLGVHVTM--ACRNAARCNAAAESIRSDPTVVERSKSSSASAIVTESVDTSSLKSIRNFCDRFIASSaGaPLDMLFLNAGVGVIGRD 199
                  5699***********************98865..699*999998888888888888888888999999******************998642436*********9988875 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.61
    TIGR03971 191 vnsihPtsvdtamiepeamre 211
                   ns hP +v+t++ ++ a  e
  MMETSP1061-20121228|20518_1 316 ANSAHPGAVATNIWDKAAWDE 336
                  699********9998655544 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   0.1   3.2e-08   1.1e-05       3      94 ..      91     199 ..      89     230 .. 0.65

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 3.2e-08
    TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGadivgvgise..lsetqek.......veal....Grkflslkadladeeaakalvdeaveeag..kidilvnnaGi..irre 94 
                  l G++alvtGan+G G  +a++la+ G ++  + +++   + ++e        ve+        + + ++d ++ ++++++ d++++++    +d+l  naG+  i r+
  MMETSP1061-20121228|20518_1  91 LVGQTALVTGANSGTGYEVALALARLGVHVTMACRNAarCNAAAESirsdptvVERSksssASAIVTESVDTSSLKSIRNFCDRFIASSAgaPLDMLFLNAGVgvIGRD 199
                  789*************************997665433113333333000111122221000222334467888888889999998876544589999999974226665 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0     4e-08   1.4e-05       1     111 [.      96     222 ..      96     235 .. 0.64

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 4e-08
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelkeagv...........kaaavkldvsdeeevkelveeveeelg..eidilvnnAG...itrDkl.llrmkeedwdevikvnLkgv 111
                  alvtGa+ g G ++a++la+ g++v++  r ++++++++ae++++  +             ++ ++d s+ +++++++++++++     +d+l  nAG   i rD+   l ++ +  + + ++n+ g 
  MMETSP1061-20121228|20518_1  96 ALVTGANSGTGYEVALALARLGVHVTMACR-NAARCNAAAESIRSDPTvversksssasAIVTESVDTSSLKSIRNFCDRFIASSAgaPLDMLFLNAGvgvIGRDADgNLSLSTDGIEMIFATNVVGH 222
                  79************************9955.5555666666555432200100001000334556788888999999998776553247999999999333345543145566666666666666655 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.3e-06   0.00044       2     111 ..      95     221 ..      94     226 .. 0.68
   2 ?   -1.4   0.0      0.79   2.7e+02     175     192 ..     316     333 ..     311     350 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.3e-06
    TIGR02415   2 valvtGaaqGiGkaiaerLakdGfavavadlneetaketakelke........kgtkavav...kldvsdkseveeaveq.aveklG.eldvlvnnaGvalv....tpileiteeeleklynvnvkg 111
                  +alvtGa  G G ++a  La+ G++v++a  n +  +++a+ +++        k   a a+   ++d s+ +++ +  ++  +++ G  ld+l  naGv+++    +  l+++ + +e +++ nv g
  MMETSP1061-20121228|20518_1  95 TALVTGANSGTGYEVALALARLGVHVTMACRNAARCNAAAESIRSdptvversKSSSASAIvteSVDTSSLKSIRNFCDRfIASSAGaPLDMLFLNAGVGVIgrdaDGNLSLSTDGIEMIFATNVVG 221
                  8****************************99977766666666541111111133344444112467777777777777523334442599999999999873322455667888999999999887 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.79
    TIGR02415 175 vnayaPGivktemreeid 192
                   n+  PG v t+++++ +
  MMETSP1061-20121228|20518_1 316 ANSAHPGAVATNIWDKAA 333
                  58899*********9865 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   3.4e-05     0.012       2      88 ..      95     193 ..      94     220 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.4e-05
    TIGR01829   2 valvtGglgGiGtaickrlakdGykvvanvapneer...ake......wlq.ekevegfdvavvkadvssfeeakaavakveael.G.pvdvlvnnaGi 88 
                   alvtG+  G G +++ +la+ G++v  ++++ + +   a++      + + +k+ + + ++  ++d ss ++ ++  ++  a   G p+d+l  naG+
  MMETSP1061-20121228|20518_1  95 TALVTGANSGTGYEVALALARLGVHVTMACRNAARCnaaAESirsdptVVErSKSSSASAIVTESVDTSSLKSIRNFCDRFIASSaGaPLDMLFLNAGV 193
                  69***********************99888753332000222111111122022223334444556777777777777775543213378888888875 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   3.2e-05     0.011       3      96 ..      96     192 ..      94     228 .. 0.69

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.2e-05
    TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeie.........aevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaG 96 
                  +lvtGa  G G e+a  la+     g+ +++  Rn    + + ++i             sa  +++ s+d ++ k + ++     +s     ++ + l  naG
  MMETSP1061-20121228|20518_1  96 ALVTGANSGTGYEVALALAR----LGVHVTMACRNAARCNAAAESIRsdptvversKSSSASAIVTESVDTSSLKSIRNFCDRFIASSAGAPLDMLFL--NAG 192
                  89*****************9....78899999999988888888887444343343234667788888998888888888888877777777765444..443 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   6.9e-05     0.024       2     109 ..      97     220 ..      96     262 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.9e-05
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaaira........qggnar.ll..kfdvadrvavrevleadiae.hgayyg.vvlnagi...ardaa.fpalseedwdavietnld 109
                  lvtga  g g  +al la  g ++++ +r+  a  ++++++ir+        + ++a+ ++  + d +  +++r+  +  ia+  ga    + lnag+    rda    +ls +  ++++ tn+ 
  MMETSP1061-20121228|20518_1  97 LVTGANSGTGYEVALALARLGVHVTMACRNA-ARCNAAAESIRSdptvversKSSSASaIVteSVDTSSLKSIRNFCDRFIASsAGAPLDmLFLNAGVgviGRDADgNLSLSTDGIEMIFATNVV 220
                  9*************************99864.333333333333000000002222221222234555555666666666654135544313456664222456541335666666666666655 PP

>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   8.5e-05     0.029     140     189 ..      93     143 ..      86     162 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8.5e-05
    TIGR02824 140 getvLihggasGiGt.taiqlakalgakvlvtagsdekle.aaekLGadvai 189
                  g+t+L+ g+ sG G  +a+ la +lg++v+++++++ +++ aae++ +d ++
  MMETSP1061-20121228|20518_1  93 GQTALVTGANSGTGYeVALALA-RLGVHVTMACRNAARCNaAAESIRSDPTV 143
                  9*************72577777.59**************9566667666555 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00016     0.054     114     163 ..      91     144 ..      80     215 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00016
    TIGR00507 114 lksekrvliiGA.GGaakavaleLlkadkeviiaNRtvekaeelaerlqe....l 163
                  l  ++++l+ GA  G +  val+L++ + +v++a R  ++ +++ae +++    +
  MMETSP1061-20121228|20518_1  91 LV-GQTALVTGAnSGTGYEVALALARLGVHVTMACRNAARCNAAAESIRSdptvV 144
                  55.899******5599*******************************99844332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1379.29
//
Query:       MMETSP1061-20121228|20519_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-47  157.6   0.0    1.5e-45  153.6   0.0    2.0  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    6.2e-21   72.9   0.0    2.2e-20   71.1   0.0    1.7  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A
    1.2e-05   22.4   0.0    2.1e-05   21.6   0.0    1.3  1  TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  153.6   0.0   1.1e-48   1.5e-45       9     312 ..      60     381 ..      57     388 .. 0.84

  Alignments for each domain:
  == domain 1    score: 153.6 bits;  conditional E-value: 1.1e-48
    TIGR00737   9 rvvlaPlagvtdlafRrlvkeyeaglvvsEmvssealveksektkkll..eiaedekpisvQlagsdpdvmaeaAkiaeelgadiiDlNmGCPvkkitkkgaGsallkepeliekivkavveavevPVTvKiRiGwdeehinve.........e..aari.....aedaGaqavalHgRTraql..yeGeanwdiiarvkqavk..iPVignGDitspedAkamLeetgadgvligRgalGkPwlfkeieqylttgklkkaptlaeklaailrhlqlladyygeekglreaRKhvawYlk.glkkkaalreelakiksvqevkelld 312
                   +v+aP+ + +dl+fR l+++y+a l+++ m+ s+ ++++++   k +    +   +p  +Ql+gsdpd +  aA+++e    d iD+N+GCP     + + G+ ll++++++ ++vk++v+  +vP  vK+R+  d e+  ++         +  aa +     + daG++ +++HgRTr q     G+a+w++i+++++     iP+++nG i++ +d +++L+ t++dgv+ + + l +P +f+++ q  +    +  ++lae+   + +++    +  g+ +gl+ +R h+  +l+ +l+ + ++r+++++  +++e+++ l+
  MMETSP1061-20121228|20519_1  60 ALVVAPMVDASDLPFRLLCRRYGANLCYTPMIHSRLVITSKAYRAKFTgtWLETADRPLIAQLCGSDPDDVLRAARLVEP-YVDGIDINCGCPQGIARRGDYGAFLLEQEQKLLRLVKHLVANLRVPLSVKVRLLPDPETNPHKlndpsyepfDtpAASLalygkLVDAGVHLLTIHGRTRKQKqdMTGHADWETIRKAVELYGdrIPIFANGSIEHYDDVEQCLKVTNCDGVMSSESLLEYPPIFYKVPQNPHRTIGR--LQLAEEFMELAKEYPP--NEGGQGSGLKCIRIHIHRFLHrDLQDDMEFRKKIVADATISELEDSLE 381
                  5899********************************99999777666511467788999*****************8765.689**********9999999*********************************9888765443112222222122222211122689*************8752378*************99899*******************************************9976655554..8899988888888775..4456779**********99973689999*******9999999988876 PP

>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.1   0.0   1.6e-23   2.2e-20       3     299 ..      61     371 ..      59     384 .. 0.81

  Alignments for each domain:
  == domain 1    score: 71.1 bits;  conditional E-value: 1.6e-23
    TIGR00742   3 lsvaPmlditdrhfryllrllskkvllytemvtakaiihgdkkkllkf.....seeekPvalqlggsdpedlakcaklaeefgydeinlnvGcPsdrvqngnfGaclmanadlvadivkamkeaveiPvtvktriGidel........dsyeel......vdfveivsdkGikefivharkawlkGlsPkenrei.Pplryervyqlkkdf.pnllieinGGiksleeikkhlsf..vdsvmvGreayenPyllaavdrelfdetdeiltrkeiveqmlpyieeelsqglslnkivrhllglfq.skegakkfrrnlsena 299
                  l vaPm+d +d  fr l r++  + l yt+m+ ++ +i +  ++  kf     ++ ++P+  ql gsdp+d++++a+l+e +  d i++n GcP    + g +Ga l+ + +++  +vk +  + ++P++vk r+  d+          sye          +  ++ d+G++ +++h r         k+ +++  + ++e++ +    +  ++ i  nG i++ +++++ l+    d+vm   +  e P ++ +v ++ + +  +   ++e +e   +y  +e  qg  l  i  h+   ++ + +   +fr+++ ++a
  MMETSP1061-20121228|20519_1  61 LVVAPMVDASDLPFRLLCRRYGAN-LCYTPMIHSRLVITSKAYRA-KFtgtwlETADRPLIAQLCGSDPDDVLRAARLVEPY-VDGIDINCGCPQGIARRGDYGAFLLEQEQKLLRLVKHLVANLRVPLSVKVRLLPDPEtnphklndPSYEPFdtpaasLALYGKLVDAGVHLLTIHGRTR-------KQKQDMtGHADWETIRKAVELYgDRIPIFANGSIEHYDDVEQCLKVtnCDGVMSSESLLEYPPIFYKVPQNPHRTIGRLQLAEEFMELAKEYPPNEGGQGSGLKCIRIHIHRFLHrDLQDDMEFRKKIVADA 371
                  78******************9976.88***********9854443.331222267899*********************987.69**************************************************99999899999985666541111114555677788888888888764.......444443145677777765554425688999************98752279**********************999999999999999999**9999999999999999998766415677778888776655 PP

>> TIGR01037  pyrD_sub1_fam: dihydroorotate dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   1.5e-08   2.1e-05      84     164 ..     109     190 ..      98     196 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 1.5e-08
    TIGR01037  84 kvreevdtkliasvyGeseeefaevaeklekadkyvdaleLnvsCPhvkg....aGieiGqdpelsaevvkavkekvdkPvlakL 164
                  ++ e +d++lia++ G+++++   +a+ +e   +yvd +++n  CP+  +    +G+ + ++ + + ++vk++ +   +P+++k+
  MMETSP1061-20121228|20519_1 109 TWLETADRPLIAQLCGSDPDDVLRAARLVE---PYVDGIDINCGCPQGIArrgdYGAFLLEQEQKLLRLVKHLVANLRVPLSVKV 190
                  577889999*********************...*************965433468999999999999**************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.46
# Mc/sec: 1285.46
//
Query:       MMETSP1061-20121228|20521_1  [L=1114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       366  (0.0892248); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.46
# Mc/sec: 3196.43
//
Query:       MMETSP1061-20121228|20520_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-56  189.4   3.5      1e-55  187.4   2.4    1.9  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.9e-24   83.3   0.7    5.8e-24   82.3   0.5    1.4  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    4.4e-06   24.7   0.2    7.8e-06   23.9   0.1    1.3  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  187.4   2.4   7.7e-59     1e-55       3     343 ..      35     348 ..      33     358 .. 0.87

  Alignments for each domain:
  == domain 1    score: 187.4 bits;  conditional E-value: 7.7e-59
    TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrrrskarrgedlevelelsleeavkGvekeielerkekCetCkGsGakkgsklktCktCgGtGqvrkqqgtllgffqs.qqtCseCkGeGkiikekCkeCkGkgrvkekkkievkiPaGvedgerlrvegkGeagenggesGdLyvevkvkehkiferegndllvevpisfvqailgeeievptleg.kvklk......ipagtqsgevlr..lkgkGvkklksk.krGdllvkvkvevPkk..lskee 343
                  Ye+L+v+kdA+++ ikkAYrk+a k+HPD+       e+ fkein Aye+Lsd+ekra+YD++g +gle+g+gg             g+ +d+f++ffggg+  g r+  +rrged++  l++sle+ ++G ++++ ++r+               + k+C++C+G+G v + ++  lg++q+ q+ C+ C+GeG  +k+           +e++ +ev + +G+++++++  +gk +++ n  e+G++   v+ keh++f+r+g+dllv+ ++s+ +a  g e +++ l+g +  ++      i+++t + + ++  + ++G+++  +   rG+l+v ++ve+P++  l +e 
  MMETSP1061-20121228|20520_1  35 YETLEVEKDADQKAIKKAYRKMAIKHHPDKGG----DEHTFKEINAAYEILSDPEKRAKYDKYGLEGLEDGGGG------------GGAHEDLFSMFFGGGR--GGRSAGPRRGEDVNHPLKVSLEDLYNGKTVKLAITRQVIV-----------GDSKVCHECDGQGAVLELRQIALGMVQQvQRRCTACGGEGYLYKK----------KREREVLEVLVEKGMKHQQKIVFRGKADEKPN-MEAGNINFIVQEKEHPVFKRKGADLLVTKNLSLNEALCGFEWKIEHLDGrDLIVRskpgevIQPETADRKPFVkiIPNEGMPSHGNPfVRGNLYVLFTVEFPSDgeLGEEV 348
                  *****************************998....6899*****************************96444............2345799******776..566789*****************************99863...........24589******************999872579***********98..........588999*********************97555.6************************************************644443334444788888887663349******998889**************853355555 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.5   4.3e-27   5.8e-24       4      88 ..      34     116 ..      32     118 .. 0.89

  Alignments for each domain:
  == domain 1    score: 82.3 bits;  conditional E-value: 4.3e-27
    TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGv.Dreddldfdadvfdsff 88 
                   ye L++++Dad++ ikka+rk+a k+hPD+  +   ++ f+ein a+++Ls+P+kra+yDkyG +G+ D+ ++   + d+f  ff
  MMETSP1061-20121228|20520_1  34 LYETLEVEKDADQKAIKKAYRKMAIKHHPDKGGD---EHTFKEINAAYEILSDPEKRAKYDKYGLEGLeDGGGGGGAHEDLFSMFF 116
                  5*****************************9876...789****************************445556677788888888 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   5.7e-09   7.8e-06       4      56 ..      45      90 ..      43      92 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 5.7e-09
    TIGR00714  4 DekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56
                 D+ka++k yrk+  ++HPD  k   e     ++  e+N Ay+ L dp kRa+y
  MMETSP1061-20121228|20520_1 45 DQKAIKKAYRKMAIKHHPD--KGGDE-----HTFKEINAAYEILSDPEKRAKY 90
                 9******************..33344.....6789****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1719.98
//
Query:       MMETSP1061-20121228|20522_1  [L=1138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     8e-110  365.1   0.0   1.1e-109  364.7   0.0    1.2  1  TIGR02146 LysS_fung_arch: homocitrate synthase
    3.1e-91  303.7   0.0    4.4e-91  303.2   0.0    1.2  1  TIGR01141 hisC: histidinol-phosphate transaminase
    1.5e-67  226.0   0.1    2.3e-67  225.5   0.1    1.2  1  TIGR02090 LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
    8.1e-66  220.6   0.1    1.3e-65  219.9   0.1    1.3  1  TIGR02660 nifV_homocitr: homocitrate synthase
    8.2e-56  187.3   0.2    1.1e-55  186.8   0.1    1.1  1  TIGR00973 leuA_bact: 2-isopropylmalate synthase
    6.7e-45  151.2   0.1    1.4e-44  150.1   0.1    1.4  1  TIGR00977 LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
    4.6e-44  148.7   0.0    6.7e-44  148.2   0.0    1.2  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    3.9e-19   66.8   0.2    9.8e-18   62.2   0.1    2.3  1  TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
    6.7e-14   49.5   0.0    1.2e-13   48.7   0.0    1.3  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    6.8e-14   49.3   0.0      1e-13   48.7   0.0    1.2  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    1.2e-13   48.6   0.0    2.2e-13   47.7   0.0    1.3  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    1.9e-13   47.5   0.1    1.6e-12   44.5   0.0    2.1  3  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    2.3e-11   41.2   0.0    3.6e-11   40.6   0.0    1.3  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    2.7e-11   40.5   0.5    1.5e-10   38.1   0.4    2.0  1  TIGR00970 leuA_yeast: 2-isopropylmalate synthase
    3.9e-11   40.3   0.0    6.4e-11   39.5   0.0    1.2  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    4.1e-11   40.1   0.0    6.9e-11   39.4   0.0    1.3  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    5.4e-10   36.6   0.0    8.6e-10   35.9   0.0    1.2  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    7.3e-09   31.5   0.1    1.1e-08   30.9   0.0    1.1  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
    4.6e-07   26.4   0.0    9.3e-07   25.4   0.0    1.4  1  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase
    5.7e-07   26.6   0.1    1.4e-06   25.3   0.1    1.5  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    0.00047   16.9   0.0     0.0022   14.7   0.0    2.1  3  TIGR01328 met_gam_lyase: methionine gamma-lyase
     0.0053   13.3   0.1      0.012   12.1   0.0    1.6  2  TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
  ------ inclusion threshold ------
      0.041   10.4   0.0      0.079    9.5   0.0    1.4  1  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase


Domain annotation for each model (and alignments):
>> TIGR02146  LysS_fung_arch: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  364.7   0.0    6e-112  1.1e-109       1     343 [.      15     363 ..      15     364 .. 0.98

  Alignments for each domain:
  == domain 1    score: 364.7 bits;  conditional E-value: 6e-112
    TIGR02146   1 ilDstLreGeqtpgvvfstekrveiakaLddiGvdyievgsPavsedirkdikkiaklklkakivthsravlddievavelevdridvlfgvsklllkkkhrkdleeileeiaevieyvkskg.vevrftaeDtsrsdledLlkvvktakeagvdrvsiaDtvGvatPrrvyelvrkvkrvv.pgvdieihahnDlGlavanalaaiegGatvvdttvnGlGeraGivpLqvllaalyyhagvkv...ykLeklkeierlveeavgieippnypivGenafthkaGlhvkavlknPetyeilppevfGrkrklvid.rltGkkaikarlekLglklseeevkkvlkkik 343
                  ilDstLreGeq     fs+++++ei k L+d+Gvd+ie+++P+ s+++++d+ +++ l+lkaki t + ++ld ++ a+e++vd + +++g+s+l++ ++h k+++ i+ +++e + +vk+++ +ev f++eD+  ++ edL+ v+k+ +eag++ + ++Dt G+atP+ v elv k+k+ + p+ ++++h+hnD G+a+anal aie+G tvv+t v+GlGer Givp  +++a +y++  + +   + L+  k +++ v++++g+eip+n+ ++G +af+hkaG+hvkavl+nPetye l+p++fG +r+++i+  l G++ ikar e+Lg +l++e+  +  ++ik
  MMETSP1061-20121228|20522_1  15 ILDSTLREGEQSMLCHFSHDDKIEIVKELSDFGVDIIEMTDPNSSPQSYQDLLEVLDLGLKAKICTSTLCKLDLVKKAAETGVDILVLFIGTSELMQTNSHGKNIDAIIATAKECVGWVKQNTdIEVWFASEDSWTTNFEDLVSVFKAGHEAGANVLCMSDTRGIATPKTVTELVTKLKARLpPSAELDFHGHNDNGCAIANALCAIEAGCTVVETCVLGLGERLGIVPTCGFVACMYTQDRDAMkerFNLKGCKALQQRVAKTAGVEIPFNNIVTGSTAFSHKAGVHVKAVLANPETYEGLNPHDFGIEREIMIAhNLCGWNGIKARSEQLGFSLTKEQCIEAKERIK 363
                  89**********************************************************************************************************************9988********************************************************9989*******************************************************98776666799******************************************************************99**********************999999998 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  303.2   0.0   2.5e-93   4.4e-91       1     347 [.     407     774 ..     407     776 .. 0.95

  Alignments for each domain:
  == domain 1    score: 303.2 bits;  conditional E-value: 2.5e-93
    TIGR01141   1 rekikklepYqpg.................arelgekevvkLnsnEnPfgpsekvkealkeelkklhrYpdpqalelkealakylgveeenillgnGsdelielliraflepg.davlvleptysmYevsakiagaevkevplkedgqedleavleaakekvklvflasPnnPtGnllkreeiekvleevedalVVvDeAYieFsee...asvlellaeypnlvvlrTlSKafgLAglRvGyaianaeiiealekvrapynvsslaleaavaalrdsdkiektveevkkererlleelkklegle.vyeSkaNFvlikvke..daeelleallekgiivRdlksaeglleeclRitvGtreenerllealk 347
                  r +i ++ pY+++                 ++++  +e v L++nEn fg+   + + + +    l+rYp p+++ lk+++a++ gv ++++++++G+de+i+l+ir f+ep+ ++ +v++pty mY+vsa+i+ +ev+  +l+  +  dl++++ ++k ++kl+fl+sP nPt + +   +i++vl e  +++V vDeAYi+F+++   +++++ll e+pnl++++T+SKafgLAg R+G++i++ +++ + ++v+apyn+s+la e+a+ a++ +d i++ +++  +er+r+ +el+  +g++ v++S++NF+l++++     e ++ ++   g++vR+ ++   ++++clR+t+G +  n+++l+a++
  MMETSP1061-20121228|20522_1 407 RSNILSMVPYKCArdeqaelgvllpgrgekENDYKCDEQVFLDANENVFGCD--LPDGILQMDLALERYPCPNQIPLKNEIAAMRGVRADQLTITVGADEVIDLIIRMFCEPNeASLVVTPPTYGMYKVSANINAVEVICSNLTPGFDLDLKDLARKIKPSTKLIFLCSPGNPTTKPIPIGDIRQVLTENPRVMVAVDEAYIDFCDDpakTTAVSLLDEFPNLMIIQTFSKAFGLAGARCGMLISSTDVATVANQVKAPYNISTLAGEVALHAIKGKDRIAAGIQQCVEERTRVAKELRSSPGVDhVFPSQTNFLLFRLSDvsLIESVYTRMASLGVLVRNRTKDL-HCQGCLRVTIGLPAMNNAFLAAFR 774
                  6788899999999999999999999999877777778**************9..66777666458************************************************889999**********************************************************************779***************998899**********************************************************************************************************98777899****************986.58*******************997 PP

>> TIGR02090  LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  225.5   0.1   1.3e-69   2.3e-67       2     351 ..      14     369 ..      13     382 .. 0.94

  Alignments for each domain:
  == domain 1    score: 225.5 bits;  conditional E-value: 1.3e-69
    TIGR02090   2 kifdttlrdGeqtPGvsltveqkveiakkldelGvdvieaGfaiasegeaeaikkiaeeglnaeilslaralkkdidkaidcgvdsihlviatsdlhlkyklkkskdevlekaveaveyakeh.GlivefsaedatrtdidflikvfkkaeeagadrinvadtvGvltPekmeelikklkekvk..lpvsvhchndfGlavansiagvlaGaeqvhvtvnGlGeraGnaaleevvialkvl..ygvdvkikteklyevsrlvsklskvkvpknkaivGenafahesGihvdavienaltyePisPekvGkkrkiilGkh.sGrkaveaklkelGievdkeqlkeilkrikelgdkG 351
                  +i+d+tlr+Geq+    +++++k+ei k+l ++Gvd+ie   + +s +  + + ++++ gl+a+i++ +  + + + ka+++gvd ++l+i ts+l       k+ d ++ +a e+v ++k++  + v f++ed+  t+ ++l+ vfk++ eaga+ ++++dt G++tP++++el+ klk+++   +++  h hnd G a+an++ +++aG + v++ v GlGer G       v+++ +     ++ + +++    + + v k ++v++p n  + G  af+h +G+hv+av++n++tye ++P   G +r+i++    +G ++++a+ ++lG++++keq  e  +rike++   
  MMETSP1061-20121228|20522_1  14 RILDSTLREGEQSMLCHFSHDDKIEIVKELSDFGVDIIEMTDPNSSPQSYQDLLEVLDLGLKAKICTSTLCKLDLVKKAAETGVDILVLFIGTSELMQTNSHGKNIDAIIATAKECVGWVKQNtDIEVWFASEDSWTTNFEDLVSVFKAGHEAGANVLCMSDTRGIATPKTVTELVTKLKARLPpsAELDFHGHNDNGCAIANALCAIEAGCTVVETCVLGLGERLGIVPTCGFVACMYTQdrDAMKERFNLKGCKALQQRVAKTAGVEIPFNNIVTGSTAFSHKAGVHVKAVLANPETYEGLNPHDFGIEREIMIAHNlCGWNGIKARSEQLGFSLTKEQCIEAKERIKEMTSAS 369
                  79*****************************************************************999888889********************9999999*****************9762699*******************************************************987799****************************************999998876644311456777888888899999*****************************************************9976438******************************98765 PP

>> TIGR02660  nifV_homocitr: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.9   0.1   7.3e-68   1.3e-65       3     361 ..      14     378 ..      12     382 .. 0.94

  Alignments for each domain:
  == domain 1    score: 219.9 bits;  conditional E-value: 7.3e-68
    TIGR02660   3 linDttLRDGEqaagvaFsaeEKlaiAkaLdeaGvdelEvGipamgeeEraairaiaalglkarllaWcRlraedieaaaevGvkavdlsvpvsdlqleaklkkdrawvleelkelvs.lakeeglkvsvgaeDasRadeeflvelaevakeagakRlRfaDtvgvldPfstyelvkalraal..elelElHaHnDlGlAtAntlaavkaGassvsvtvlGlGERAGnAaleevalalkel..lgldtgidlselkelsqlvakasgraleaqkavvGesvFaHEsGiHvdgllkdeatYesldPeevGrerelviGKH.sgraaviealkelgleleeeeaeelleavravaerlKrsleeeel 361
                   i D tLR+GEq+    Fs+++K++i k L++ Gvd +E+  p  + +  +++ ++++lglka++ + +  +   +++aae+Gv+ + l + +s+l+ ++ + k+ ++++++ ke+v  + +++ ++v    eD+  ++ e lv++ +  +eaga+ l ++Dt g+ +P ++ elv++l+a+l  + el++H+HnD G A An+l a++aG ++v++ vlGlGER G  +    ++ + ++    ++   +l+  k+l q vak +g++++ ++ v+G++ F+H +G+Hv+++l +++tYe+l+P+ +G ere++i     g ++++++ ++lg +l++e+  e  e++++++++ + +l+++e 
  MMETSP1061-20121228|20522_1  14 RILDSTLREGEQSMLCHFSHDDKIEIVKELSDFGVDIIEMTDPNSSPQSYQDLLEVLDLGLKAKICTSTLCKLDLVKKAAETGVDILVLFIGTSELMQTNSHGKNIDAIIATAKECVGwVKQNTDIEVWFASEDSWTTNFEDLVSVFKAGHEAGANVLCMSDTRGIATPKTVTELVTKLKARLppSAELDFHGHNDNGCAIANALCAIEAGCTVVETCVLGLGERLGIVPTCGFVACMYTQdrDAMKERFNLKGCKALQQRVAKTAGVEIPFNNIVTGSTAFSHKAGVHVKAVLANPETYEGLNPHDFGIEREIMIAHNlCGWNGIKARSEQLGFSLTKEQCIEAKERIKEMTSASRSTLKATEA 378
                  589***************************************************************9988888889*****************************************944556779********************************************************96678999**************************************9999988888655114567789999***************************************************************865489*******************************999999988875 PP

>> TIGR00973  leuA_bact: 2-isopropylmalate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.8   0.1   6.3e-58   1.1e-55       3     362 ..      14     367 ..      12     387 .. 0.93

  Alignments for each domain:
  == domain 1    score: 186.8 bits;  conditional E-value: 6.3e-58
    TIGR00973   3 lifdttlrdGeqapgasltveeklqiakalerlgvdiieaGfpvsskgdfeavqkiarevknarvvglaravekdidaaaealkpaekkrihtfiatsdihleaklkktkdevlerivkavkyaknfvdd.vefsaedagrteleflarvveaaieaGattiniPdtvGyalPaeygelikelkenvPnidkailsvhchddlGlavanslaavknGarqvectinGiGeraGnaaleevvmalkvrkdflnvetgintkeiyrtsrlvskltgmlvqrnkaivGdnafahesGihqdGvlknketyeilspesiGlkkeklvlgkrsGraalkkrleelGfkldeeeldklfekfkelad 362
                   i+d tlr+Geq++   ++ ++k++i k+l ++gvdiie   p ss+  ++ + ++     +a++++ + +  + ++ aae+        +  fi ts++   +   k+ d +++ +++ v + k+ +d+ v f++ed+  t+ e+l+ v++a  eaGa ++ + dt G a+P+  +el+ +lk ++P    a l  h+h+d G a+an+l a+++G + ve+++ G+Ger G +    +v  + + +d   ++   n k  ++  + v+k +g+ ++ n  + G+ af h++G+h + vl n etye l+p + G+++e ++  +  G + +k r e+lGf l++e+  ++ e+ ke++ 
  MMETSP1061-20121228|20522_1  14 RILDSTLREGEQSMLCHFSHDDKIEIVKELSDFGVDIIEMTDPNSSPQSYQDLLEVLDLGLKAKICTSTLCKLDLVKKAAET----GVDILVLFIGTSELMQTNSHGKNIDAIIATAKECVGWVKQNTDIeVWFASEDSWTTNFEDLVSVFKAGHEAGANVLCMSDTRGIATPKTVTELVTKLKARLPP--SAELDFHGHNDNGCAIANALCAIEAGCTVVETCVLGLGERLGIVPTCGFVACMYT-QDRDAMKERFNLKGCKALQQRVAKTAGVEIPFNNIVTGSTAFSHKAGVHVKAVLANPETYEGLNPHDFGIEREIMIAHNLCGWNGIKARSEQLGFSLTKEQCIEAKERIKEMTS 367
                  699******************************************************999999***9999976666666664....3456779***********************************96599*******************************************************6..7999*******************************************99999876.556666778899999**************************************************************************************9999999999876 PP

>> TIGR00977  LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.1   7.7e-47   1.4e-44       3     364 ..      14     367 ..      12     408 .. 0.85

  Alignments for each domain:
  == domain 1    score: 150.1 bits;  conditional E-value: 7.7e-47
    TIGR00977   3 klydttlrdGaqaeGvslsledkiriaeklddlGihyieGGwpganpkdvaffekvkeenlknakvvafsstrrpdkkveedkqlqalikaetpvvtifGkswdlhveealkttleenlkmiydtveylkrfad.eviydaehffdGykanpeyalktlkvaekaGadwlvladtnGGtlpheieeitkkvkkrl.kdpqlGihahndsetavansllaveaGavqvqGtinGlGercGnanlcslipnlqlklgldviekenlkkltevarlvaeivnlaldenmpyvGesafahkGGvhvsavkrnpktyehidpelvGnkrkivvs.elaGksnvleklkelGieideks.pkvrkilkkike 364
                   + d+tlr+G q     +s +dki i ++l d+G++ ie   p + p+  + + +v +  lk ak+++  st            ++   +++  ++ +f  + +l  +++    ++  ++   + v ++k+ +d ev + +e   d + +n e  + ++k+ ++aGa++l ++dt G + p+ ++e+++k+k rl  +++l  h hnd + a+an+l a+eaG + v+  + GlGer G    c  +  +  +    + e+ nlk    + + va+  ++  + n    G++af+hk Gvhv av  np+tye ++p+  G +r+i+++ +l+G   +  + ++lG+ + +++  + ++ +k++  
  MMETSP1061-20121228|20522_1  14 RILDSTLREGEQSMLCHFSHDDKIEIVKELSDFGVDIIEMTDPNSSPQSYQDLLEVLDLGLK-AKICT--STLCK------LDLVKKAAETGVDILVLFIGTSELMQTNSHGKNIDAIIATAKECVGWVKQNTDiEVWFASE---DSWTTNFEDLVSVFKAGHEAGANVLCMSDTRGIATPKTVTELVTKLKARLpPSAELDFHGHNDNGCAIANALCAIEAGCTVVETCVLGLGERLGIVPTCGFVACMYTQDRDAMKERFNLKGCKALQQRVAKTAGVEIPFNNIVTGSTAFSHKAGVHVKAVLANPETYEGLNPHDFGIEREIMIAhNLCGWNGIKARSEQLGFSLTKEQcIEAKERIKEMTS 367
                  589************************************************99999999997.45543..33222......2233444455666677777777888899999999999999999******999845555555...999***********************************************66899***********************************************998877655566788****************************************************************9973689999999*********986541455555544444 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.2   0.0   3.7e-46   6.7e-44       9     329 ..     437     772 ..     432     774 .. 0.90

  Alignments for each domain:
  == domain 1    score: 148.2 bits;  conditional E-value: 3.7e-46
    TIGR01140   9 aaqygikeeewlDlStninplgppevleislealaryPdeeadelreaaaayygldaesvlavnGaqeaiqllprl.lapkrv..lvlaptyseyaralraagaevvels.......dleelaael.eeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpae.slaalaea..lpglvVlrSltKffglaGlRlGfvvAepallerlkealgpWsvngpAqavgeaaladeawqkatrarlaaererlaallaalglle.vvggtalFllvrtedaa...alkeaLarrgilvRdfenfegld.prllRvavrteeenerLlea 329
                   + y+++e+ +lD   n+  +  p+ + +   al+ryP ++   l++ +aa  g++a+++ ++ Ga e+i l+ r+ ++p+++  +v  pty+ y+  ++++ +ev + +       dl++la+++  +++l++++ P NPt + ++  ++++++ + +  ++++ vDEA+idf ++  + +a      +p+l++++ + K fglaG R+G ++++ ++++  ++++ p +++++A +v+ +a++ ++ ++a  +++ +er+r+a++l++ ++++ v++++++Fll+r++d +   ++++++a  g+lvR+ ++  +l+ + +lRv +   + n+ +l+a
  MMETSP1061-20121228|20522_1 437 ENDYKCDEQVFLDANENVFGCDLPDGILQMDLALERYPCPNQIPLKNEIAAMRGVRADQLTITVGADEVIDLIIRMfCEPNEAslVVTPPTYGMYKVSANINAVEVICSNltpgfdlDLKDLARKIkPSTKLIFLCSPGNPTTKPIPIGDIRQVLTENP--RVMVAVDEAYIDFCDDPaKTTAVSLLdeFPNLMIIQTFSKAFGLAGARCGMLISSTDVATVANQVKAPYNISTLAGEVALHAIKGKDRIAAGIQQCVEERTRVAKELRSSPGVDhVFPSQTNFLLFRLSDVSlieSVYTRMASLGVLVRNRTK--DLHcQGCLRVTIGLPAMNNAFLAA 772
                  567899999999999999999999888888889***************************************877746777766345556****************999999*****99***999988899**************************88..99***********999866555544467*********************************************************************************999862699*************9999***************999..443156789999888888777766 PP

>> TIGR03217  4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.1   5.5e-20   9.8e-18       2     240 ..      12     251 ..      11     268 .. 0.81

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 5.5e-20
    TIGR03217   2 kltitdvtLrdGshavrhqftaeevraiaaaLdeagvdaievahGdGLggs......slnyGfsaasdlelieaaaeavkkakvav.lllPGigtveelkaaadaGvkvvrvathcteadvseqhielar.elgletvgfLmmshmaspeklaeqakllesyGadvvyvvdsaGallpedvkdrvkalkealkpetevGlhahenlslavansivaveeGatridaslaglGagaGnaplevlvavl 240
                  k +i d tLr+G +++  +f++++  +i++ L + gvd+ie++  +    s       l+ G  a+  ++ + +   + k a+  v +l+  igt  el ++ + G ++  + + +      +  +++ + + ++e+      s +++ e l++  k   + Ga+v+ + d+ G  +p+ v++ v+ lk++l p++e+ +h+h++ + a+an++ a+e+G+t +++++ glG   G  p+  +va +
  MMETSP1061-20121228|20522_1  12 KWRILDSTLREGEQSMLCHFSHDDKIEIVKELSDFGVDIIEMTDPNSSPQSyqdlleVLDLGLKAKICTSTLCKLDLVKKAAETGVdILVLFIGTS-ELMQTNSHGKNIDAIIATA------KECVGWVKqNTDIEVWFASEDSWTTNFEDLVSVFKAGHEAGANVLCMSDTRGIATPKTVTELVTKLKARLPPSAELDFHGHNDNGCAIANALCAIEAGCTVVETCVLGLGERLGIVPTCGFVACM 251
                  56899**************************************98765443222222567888887777777665444455555553556678886.6777888888876654433......3345555414566666666789999**********************************************************************************************999976 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   6.5e-16   1.2e-13      94     339 ..     491     723 ..     482     764 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 6.5e-16
    TIGR01265  94 leaddvvltsGcsqaielviealanaganiL.vPrPgfplYetlakalglevrkydllpekdweidldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgdatfvplaklaskvPvlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqg.AlpdilektpkeffekkikvlkenaelvyeelkeipgltcvkPegamyllvkl 339
                  ++ad++++t G+ + i+l+i+  +++++  L v  P++ +Y+  a+ + +ev   +l p+  +++dl++l+  +   t+++ +  P+nP+        +++v+  +e+ ++++  DE Y ++  + a+ ++++ l++   ++++++ sk +   G r G li      ++ +     +k+      + +tl+ + Al +i  k ++   +++ + ++e + +  +el+  pg++ v P+ + +ll +l
  MMETSP1061-20121228|20522_1 491 VRADQLTITVGADEVIDLIIRMFCEPNEASLvVTPPTYGMYKVSANINAVEVICSNLTPG--FDLDLKDLARKIKPSTKLIFLCSPGNPTTKPIPIGDIRQVL--TENPRVMVAVDEAYIDFCDDPAKTTAVSLLDEFPNLMIIQTFSKAFGLAGARCGMLISSTDVATVAN----QVKAPY----NISTLAGEvALHAI--KGKDRIAAGIQQCVEERTRV-AKELRSSPGVDHVFPSQTNFLLFRL 723
                  6899********************998766515678**********************95..889******************************99999996..5888999***********999**********999999*****************9997655444444....233333....33333332133333..34455556666666665553.4567777777777777777777666 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.0   5.8e-16     1e-13      65     279 ..     489     699 ..     479     743 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 5.8e-16
    TIGR03947  65 agGdaekvlvthGsseaiylvltallrPGde.vvvvdpayhslselavalgakvrrwplaaerdfrpdlddlralvtdrtrlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvydaeplpepsaa..adrvisfgtlskafGlpGlrvGWcvaPkdllaelvrlrdyltlslsPlvellaevavehadalieprlaearanrrrll 279
                  +g  a+++ +t+G+ e i l++ +  +P +  +vv+ p+y   +  a    ++v    l+   +f  dl+dl+  +++ t+l+ +  P nPt   +   + +++l   ++   ++  d+a+ d+  d    + +s +      + + t+skafGl+G r G  +   d+++   +++      +s l   +a +a++  d++     ++  + r r+ 
  MMETSP1061-20121228|20522_1 489 RGVRADQLTITVGADEVIDLIIRMFCEPNEAsLVVTPPTYGMYKVSANINAVEVICSNLT--PGFDLDLKDLARKIKPSTKLIFLCSPGNPTTKPIPIGDIRQVLT--ENPRVMVAVDEAYIDFCDDPAKTTAVSLLdeFPNLMIIQTFSKAFGLAGARCGMLISSTDVATVANQVKA--PYNISTLAGEVALHAIKGKDRIA-AGIQQCVEERTRVA 699
                  4556678889******************98626777788888777777777777777666..8**********************************999999975..556667788*******9887766666554114578999***********************999988875..56788999999999999999865.44556666666655 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.2e-15   2.2e-13      96     329 ..     498     725 ..     488     762 .. 0.86

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.2e-15
    TIGR03540  96 sliGskeGiahlplafvnpGdivlv.pdPgyPvykistllaggepyelPlkeendflPdldaipedvlkkakilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivfdeykalsflevdgakdvaielhslsktynmtGWrigfavGnkeliaalgkvksnvdsGvfqaiqeaaiaaleeeeevvkelrkvykkrrdllvealkkiGldvkkpkatfylWvkvPe 329
                    +G+ e i  ++  f +p +  lv + P+y +yk+s+ +   e+    l+   +f  dl+++  ++   +k++fl  P nPt+  ++   +++v+  +++  ++v+ d+ay +   d  k+ ++  +d+  ++ i ++++sk++ ++G r g+ +   ++ +  ++vk   +    +   e+a++a+++++++ + +++  ++r  +  e   + G+d   p++t +l  +  +
  MMETSP1061-20121228|20522_1 498 ITVGADEVIDLIIRMFCEPNEASLVvTPPTYGMYKVSANINAVEVICSNLTP--GFDLDLKDLARKIKPSTKLIFLCSPGNPTTKPIPIGDIRQVL--TENPRVMVAVDEAYIDFCDDPAKTTAVSLLDEFPNLMI-IQTFSKAFGLAGARCGMLISSTDVATVANQVKAPYNIS--TLAGEVALHAIKGKDRIAAGIQQCVEERTRVAKELRSSPGVDHVFPSQTNFLLFRLSD 725
                  458999**************998862678***********999988877775..7888**********************************9995..68999**************9999888888899888877.89******************************987644..456799*****************99998776666556789999999999888877755 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.39        70       2      39 ..      16      52 ..      15      56 .. 0.76
   2 ?    2.5   0.1     0.048       8.6     151     243 ..      36     125 ..      27     144 .. 0.69
   3 !   44.5   0.0   9.1e-15   1.6e-12      96     267 ..      88     274 ..      85     279 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.39
    TIGR01108  2 tdvvlrdahqsllatrlrteDmLpileklDkvgywsle 39
                  d +lr++ qs+l   +  +D ++i+++l + g   +e
  MMETSP1061-20121228|20522_1 16 LDSTLREGEQSMLC-HFSHDDKIEIVKELSDFGVDIIE 52
                 57888888888875.67888888888888888876665 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.048
    TIGR01108 151 ylelakellelgvDsiaikDmaGlLtPkaayeLvsalkkevelpvelhshattglaelall.kaieaGvdviDtai..sslsagtshpa.tealvaa 243
                   +e+ kel ++gvD+i + D     +P+   +L++ l   ++ ++     +t+ l++l l+ ka+e Gvd++   i  s l ++ sh    +a++a+
  MMETSP1061-20121228|20522_1  36 KIEIVKELSDFGVDIIEMTDPNS--SPQSYQDLLEVLDLGLKAKI-----CTSTLCKLDLVkKAAETGVDILVLFIgtSELMQTNSHGKnIDAIIAT 125
                  58999***********9999764..77777777776643333333.....67777777665268999999876544225666677775314555555 PP

  == domain 3    score: 44.5 bits;  conditional E-value: 9.1e-15
    TIGR01108  96 fvkkavenGldvfrif....Dal..n.Darnlkkaieavkkhgahvqga....lsyti..sPvhtlekylelakellelgvDsiaikDmaGlLtPkaayeLvsalkkeve..lpvelhshattglaelallkaieaGvdviDtaisslsagtshpatealvaalretgydtgldiellkeiadyfre 267
                   vkka+e G+d++ +f    + +  n   +n+ + i ++k+    v+      + ++   s     e  + + k   e g++ +++ D  G+ tPk+  eLv++lk +++   +++ h h   g a +  l aieaG+ v++t++  l    +  +t  +va +  +++d+  ++  lk  ++  ++
  MMETSP1061-20121228|20522_1  88 LVKKAAETGVDILVLFigtsELMqtNsHGKNIDAIIATAKECVGWVKQNtdieVWFASedSWTTNFEDLVSVFKAGHEAGANVLCMSDTRGIATPKTVTELVTKLKARLPpsAELDFHGHNDNGCAIANALCAIEAGCTVVETCVLGLGERLGIVPTCGFVACMYTQDRDAMKERFNLKGCKALQQR 274
                  6899999999999888433211222214578888888888765544432111144444115555578999999999********************************98778999************************************************99999987777666666665555 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.6   0.0     2e-13   3.6e-11      74     242 ..     487     660 ..     480     773 .. 0.73

  Alignments for each domain:
  == domain 1    score: 40.6 bits;  conditional E-value: 2e-13
    TIGR03539  74 gvkgldeeavlPviGtkelvallPtllGlgagdtvviPevayPtyevgarlagaeavaad.......dlteldp...ekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWege...avsvldpevcggdlegllavhslskrsnlagyragfvaGdealvaellev 242
                  +++g+ +++   ++G+ e++ l+ +++   ++  +v+   +y  y+v+a++   e++ ++       dl++l      ++kli+l sP+nPt + + + ++r+v++   +  v+va de y++++ +     avs+ld      ++ +l+ + ++sk   lag r g++    ++ +   +v
  MMETSP1061-20121228|20522_1 487 AMRGVRADQLTITVGADEVIDLIIRMFCEPNEASLVVTPPTYGMYKVSANINAVEVICSNltpgfdlDLKDLARkikPSTKLIFLCSPGNPTTKPIPIGDIRQVLT--ENPRVMVAVDEAYIDFCDDPAkttAVSLLD------EFPNLMIIQTFSKAFGLAGARCGMLISSTDVATVANQV 660
                  567888999999*********99998887766666666689***********99999876433333333333333335899**********************976..56789************9887677899998......5899********************99877765544444 PP

>> TIGR00970  leuA_yeast: 2-isopropylmalate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.4   8.5e-13   1.5e-10      29     316 ..      15     278 ..       6     389 .. 0.71

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 8.5e-13
    TIGR00970  29 wlsvdlrdGnqalidpmsverkkryfkllvriGfkeievgfpsasqtdfdfvreiieqglipddvtiqvltqsreelikrtvealsGakkaivhlynatsdlfrevvfrasreevlalavegsklvrklvkdaaksketrwsfeyspesfsdtelefavevceavkeviepteerpiifnlpatvevatpnvyadsieylstniaerekvilslhphndrGtavaaaelGllaGadrieGclfGnGertGnvdlvtlalnlytqGvspnldfsdldeilrvvercnki 316
                   l   lr+G+q++    s ++k ++ k l ++G   ie++ p +s   ++   e+++ gl      i + t ++ +l+k++ e  +G    i+ l+  ts+l++      s+ + ++  + ++k     vk+     +t+ +  ++ e    t+ e  v v +a        e+   ++ +  t  +atp + ++++  l  ++    +  l  h hnd G+a+a a   + aG+  +e c++G Ger G v    +   +ytq  +   +  +l+  + + +r  k 
  MMETSP1061-20121228|20522_1  15 ILDSTLREGEQSMLCHFSHDDKIEIVKELSDFGVDIIEMTDPNSSPQSYQDLLEVLDLGL---KAKICTSTLCKLDLVKKAAE--TGV--DILVLFIGTSELMQTN----SHGKNIDAIIATAKECVGWVKQ-----NTDIEVWFASEDSWTTNFEDLVSVFKA------GHEAGANVLCMSDTRGIATPKTVTELVTKLKARLPP--SAELDFHGHNDNGCAIANALCAIEAGCTVVETCVLGLGERLGIVPTCGFVACMYTQDRDAMKERFNLKGCKALQQRVAKT 278
                  35667****************************************999999999999876...4567788889******9866..565..47789999**998764....4444555555443333444444.....344444455444444555544555444......455566689999*************99999999876..56689*******************************************999*****988776666666665555555554 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   3.6e-13   6.4e-11      88     262 ..     491     652 ..     480     670 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 3.6e-13
    TIGR03538  88 vdperqvlPvnGtrealfafvqavidraekalvvlPnPfyqiyeGaallagaepyflnctaengfkpdfdavpeevWkrvqllfvcsPgnPtGavlsleelkklleladkydfiiasdecyselyldeaeaPvGlleaaaelGrddfkrllvfhslskrsnvPGlrsGfvaGdae 262
                  v +++  +   G+ e +  +++   +++e++lvv+P P y +y  +a +   e    n     gf  d++ + +++   ++l+f+csPgnPt + +++ +++++l+ +     ++a de y ++  d a        +a +l  d+f +l++ +++sk   + G r G++   ++
  MMETSP1061-20121228|20522_1 491 VRADQLTI-TVGADEVIDLIIRMFCEPNEASLVVTP-PTYGMYKVSANINAVEVICSNL--TPGFDLDLKDLARKIKPSTKLIFLCSPGNPTTKPIPIGDIRQVLTEN--PRVMVAVDEAYIDFCDDPA----K--TTAVSL-LDEFPNLMIIQTFSKAFGLAGARCGMLISSTD 652
                  55554444.459999999999***********9999.99********999999877766..6789**************************************98755..5689******988665544....2..234444.479**********************9766555 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.0   3.9e-13   6.9e-11      95     266 ..     491     659 ..     481     726 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 3.9e-13
    TIGR01264  95 leaddvvlasGcshalelaiealadaGenvlv.PrPGfplyetlakaldievklynlladedweidlkelesliddktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkgatflalaslssevPilslgGlakrllvPGWrlGWliihdrkgvlrdv 266
                  + ad++ ++ G+ + ++l i   +++ e  lv   P + +y+  a+   +ev   nl ++  +++dlk+l+  i   tk++ +  P+nP+        ++++l  +e+ ++++  de y d+  + a+ +a++ l+    +++++  +k + + G r G li      ++ + 
  MMETSP1061-20121228|20522_1 491 VRADQLTITVGADEVIDLIIRMFCEPNEASLVvTPPTYGMYKVSANINAVEVICSNLTPG--FDLDLKDLARKIKPSTKLIFLCSPGNPTTKPIPIGDIRQVL--TENPRVMVAVDEAYIDFCDDPAKTTAVSLLDEFPNLMIIQTFSKAFGLAGARCGMLISSTDVATVANQ 659
                  679999********************99876515689********************998..678******************************99999986..6889999999******************99988888999******************87766666553 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.0   4.8e-12   8.6e-10      66     239 ..     499     668 ..     491     760 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 4.8e-12
    TIGR03537  66 saGskeaifhlplafldpeeerkkviygtpgypvyerGalfaggealkvklkkedgflleldaveeailretkivwinyphnptGaeapasylkevaelareygiilasdecyaeiyseekpasvlev..glenvlafhslskrsGmtGyrsgflaGdeelvsalrklrasvGvas 239
                  + G+ e i  +   f +p+e    ++++ p+y +y++ a     e +  +l++  gf l+l+++ ++i   tk++++  p npt    p   +++v  l+ +  +++a de y +  ++ + ++++ +  +  n++++++ sk  G++G r g+l   +++ ++ ++++a   +++
  MMETSP1061-20121228|20522_1 499 TVGADEVIDLIIRMFCEPNE--ASLVVTPPTYGMYKVSANINAVEVICSNLTP--GFDLDLKDLARKIKPSTKLIFLCSPGNPTTKPIPIGDIRQV--LTENPRVMVAVDEAYIDFCDDPAKTTAVSLldEFPNLMIIQTFSKAFGLAGARCGMLISSTDVATVANQVKAPYNIST 668
                  56777877777778887554..5677788*********999999888888875..8**********************************999998..5677889**********9988765555554115679**********************99999999888888777664 PP

>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   6.1e-11   1.1e-08     630     791 ..      88     258 ..      84     289 .. 0.82

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 6.1e-11
    TIGR01235 630 fvkqaaqsGidifrvfdslnylenlk...lgvdavkeagkvveaaicytGdi....ldkakkkydlkyytelaeelekaGahilaikdmaGllkPaaaklliaalrekt..dlPihlhthdtsGaavasvlaaveaGvdvvdvavdslsGltsqPslgalvaaleGseldt 791
                  +vk+aa++G+di+ +f     l + +     +da+  ++k +   +    di      +     +++  +++ +   +aGa +l++ d  G+  P++  +l++ l+++      + +h h+  G a+a  l a+eaG  vv+  v  l          ++va++  +++d+
  MMETSP1061-20121228|20522_1  88 LVKKAAETGVDILVLFIGTSELMQTNshgKNIDAIIATAKECVGWVKQNTDIevwfASEDSWTTNFEDLVSVFKAGHEAGANVLCMSDTRGIATPKTVTELVTKLKARLppSAELDFHGHNDNGCAIANALCAIEAGCTVVETCVLGLGERLGIVPTCGFVACMYTQDRDA 258
                  799************98776666554112689********9999999999983332233444567777889999999******************************9988899*****************************9999987776666677778877777765 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   5.2e-09   9.3e-07     212     323 ..     536     648 ..     521     662 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 5.2e-09
    TIGR03801 212 kikadeakedg.katwqytdkelekLkdpkikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvygtfvdd.....frsllaelpantilvysfskyfgatGWrlgvia 323
                  +i+a e+   + +  +    k+l +   p+ k +f+  P nP++  i    i  ++++++e +p +m+  D+ y  f dd       sll e p n +++ +fsk fg +G r g++ 
  MMETSP1061-20121228|20522_1 536 NINAVEVICSNlTPGFDLDLKDLARKIKPSTKLIFLCSPGNPTTKPIP---IGDIRQVLTE-NPRVMVAVDEAYIDFCDDpakttAVSLLDEFP-NLMIIQTFSKAFGLAGARCGMLI 648
                  566666554331456888899999999****************98775...7778888776.9**************99733333468888888.88999**************9875 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.1   7.9e-09   1.4e-06      93     265 ..     491     654 ..     480     667 .. 0.75

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 7.9e-09
    TIGR03542  93 idpeeifisdGakcdvarllelfgs..dktvavqdPvyPvyvdsavlaGragvldddgkykkivylpctkenefiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdpslPksiyeiegakecaieirsfsktlGftGvrlgytvvPkelk 265
                  + ++++ i+ Ga   +  +  +f +  ++++ v+ P+y +y  sa ++        +   ++++    ++ +++  ++   +++++i+lCsP nPt   +   ++++++  +++   ++  d ay  f  dp+  +++  +++  +  i i++fsk+ G++G r+g+ +   ++ 
  MMETSP1061-20121228|20522_1 491 VRADQLTITVGADEVIDLIIRMFCEpnEASLVVTPPTYGMYKVSANINAV------EVICSNLTPGFDLDLKDLARKIK--PSTKLIFLCSPGNPTTKPIPIGDIRQVL--TENPRVMVAVDEAYIDFCDDPAKTTAVSLLDEFPNLMI-IQTFSKAFGLAGARCGMLISSTDVA 654
                  55666666667766666677777642245667777777777777777766......33344555544455555555554..4469*********************997..477788999*********************99999988.9***************998777765 PP

>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       2.9   5.1e+02     132     179 ..     124     172 ..     102     186 .. 0.77
   2 !   14.7   0.0   1.3e-05    0.0022     135     284 ..     556     712 ..     518     725 .. 0.72
   3 ?   -4.0   0.0       6.2   1.1e+03     279     310 ..     870     900 ..     836     903 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 2.9
    TIGR01328 132 aspeevkaaikdntki.vyfetpanptlklidleavvrvakekgvkviv 179
                  a+++e    +k+nt i v+f +    t ++ dl  v +  +e+g+ v+ 
  MMETSP1061-20121228|20522_1 124 ATAKECVGWVKQNTDIeVWFASEDSWTTNFEDLVSVFKAGHEAGANVLC 172
                  4455666778889988789999999999999999999999999988764 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 1.3e-05
    TIGR01328 135 eevkaaikdntkivyfetpanptlklidleavvrvakekg.vkvivdntfat....plltrpvalGvd....vvvhsatkyigGhgdvvaGvliGdaellqrirlvgvkdltGavispfdaflvlrGlktlavrmkresenaekvaeklkehpavekvl 284
                  ++++++ik+ tk++++ +p npt k i +  + +v  e+  v v vd+++      p  t  v+l  +    +++ + +k  g  +   +G+li  ++  + +          + ++   a   ++G   +a  +++  e+ ++va+ l++ p v++v+
  MMETSP1061-20121228|20522_1 556 KDLARKIKPSTKLIFLCSPGNPTTKPIPIGDIRQVLTENPrVMVAVDEAYIDfcddPAKTTAVSLLDEfpnlMIIQTFSKAFG-LAGARCGMLISSTDV-ATVANQVKAPYNISTLAGEVALHAIKGKDRIAAGIQQCVEERTRVAKELRSSPGVDHVF 712
                  67899*****************************9988877*******98642223667777766443112145555555554.444556666666554.44444444445555677777888888888888888888888888888888888888886 PP

  == domain 3    score: -4.0 bits;  conditional E-value: 6.2
    TIGR01328 279 avekvlypGleehedrdiaakqmkkgGgllaf 310
                    +k l+ G+ eh++     +q+ + Gg+++ 
  MMETSP1061-20121228|20522_1 870 DAKKTLHAGFCEHPEYPC-FRQIGTNGGMITN 900
                  557888999999999875.6899999999986 PP

>> TIGR01329  cysta_beta_ly_E: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       5.3   9.5e+02     333     360 ..      26      53 ..      26      55 .. 0.86
   2 !   12.1   0.0   6.8e-05     0.012      47     174 ..     476     605 ..     463     612 .. 0.75

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 5.3
    TIGR01329 333 smPcklshasidaevrkerdlpedlvrl 360
                  sm c++sh      v++  d+ +d++ +
  MMETSP1061-20121228|20522_1  26 SMLCHFSHDDKIEIVKELSDFGVDIIEM 53 
                  799*****98776999999*****9976 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 6.8e-05
    TIGR01329  47 Ptrtalesllakleka.eralavssGm.aaldvivrllkagd..eiiagddlyGGtdrlltqlksksgvvvvhvdttdlekvkavlgdlpktklvllesPtnPlikivdirkiaeaakalnedalvvvdntm 174
                  P +  l++++a +  +    l+++ G    +d i+r++ + +   ++ +   yG + ++ + +++   + ++  +  dl+    + + +p tkl++l sP nP +k + i  i ++  + n+ ++v vd++ 
  MMETSP1061-20121228|20522_1 476 PNQIPLKNEIAAMRGVrADQLTITVGAdEVIDLIIRMFCEPNeaSLVVTPPTYG-MYKVSANINAVEVICSNLTPGFDLDLKDLARKIKPSTKLIFLCSPGNPTTKPIPIGDIRQVL-TENPRVMVAVDEAY 605
                  555567777888877754567777776245788888665444245667777775.7788888999888999999998888777777777*****************88888886554.5678999*999875 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00044     0.079      71     176 ..     498     606 ..     471     617 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00044
    TIGR02080  71 vtssGmsaiellviallkpddl.lvaPhdcyGGtyrllkalakkgklkvqlvd..qsdeealekalaekpklvlietPsnPllrvvdiaklckl.akaagavvvvdntfl 176
                  +t      i+l++  + +p++  lv+    y G y++  + +  +++  +l+     d + l++ ++  +kl+++ +P nP  + + i  + ++ +++  ++v+vd++++
  MMETSP1061-20121228|20522_1 498 ITVGADEVIDLIIRMFCEPNEAsLVVTPPTY-GMYKVSANINAVEVICSNLTPgfDLDLKDLARKIKPSTKLIFLCSPGNPTTKPIPIGDIRQVlTENPRVMVAVDEAYI 606
                  5555567899999999998874233333455.6899999988888888888762245677899999999***************99999998861555667889999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        23  (0.00560702); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              23  [number of targets reported over threshold]
# CPU time: 0.85u 0.17s 00:00:01.02 Elapsed: 00:00:00.55
# Mc/sec: 2730.97
//
Query:       MMETSP1061-20121228|20526_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1247.30
//
Query:       MMETSP1061-20121228|20525_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.004   14.7   0.1     0.0068   13.9   0.1    1.4  1  TIGR00980 3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17


Domain annotation for each model (and alignments):
>> TIGR00980  3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   1.7e-06    0.0068      56     105 ..      43      94 ..      22      99 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.7e-06
    TIGR00980  56 rapvlGgnfav.wGGlf..stidcalvavrkkedPwnsivsGaltGallavrs 105
                  ++++  g+++  +GG++   ++ c + a+ ++   w  i+sG+  Ga l v s
  MMETSP1061-20121228|20525_1  43 KSAMSAGSLGTyFGGIYcyHALQCPMEAIHGRPSLWHNIISGGTIGA-LGVSS 94 
                  4555555555415888622689*********************8887.45555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 873.64
//
Query:       MMETSP1061-20121228|20528_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1206.76
//
Query:       MMETSP1061-20121228|20527_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       262  (0.0638713); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2142.28
//
Query:       MMETSP1061-20121228|20531_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 2067.83
//
Query:       MMETSP1061-20121228|20529_1  [L=527]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (527 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2484.22
//
Query:       MMETSP1061-20121228|20530_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       369  (0.0899561); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.31
# Mc/sec: 2942.08
//
Query:       MMETSP1061-20121228|20533_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1015.74
//
Query:       MMETSP1061-20121228|20532_1  [L=908]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (908 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       248  (0.0604583); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.33
# Mc/sec: 3631.70
//
Query:       MMETSP1061-20121228|20534_1  [L=672]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.35    7.1  23.4       0.53    6.5  16.2    1.3  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
       0.57    6.9  20.3          1    6.1  14.0    1.3  1  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5  16.2   0.00026      0.53       4     124 ..     261     385 ..     258     444 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00026
    TIGR01642   4 ekdrerEksrerdrdksk..e..RsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkppkyeav 124
                    dre E + + + + s+  +  R+ k   +r+  R+R  ++ +   r++ R+R r+r +s+s+s l+  s+ +S +r r+rs+s+s     +   ++  +s +   ++k++ + d++pp   + 
  MMETSP1061-20121228|20534_1 261 AYDRESEANENYYDNSSElnDspRDDKSIFSRKSGRSRSDNNSQYESRRNFRSRSRSRSKSKSPSRLRSRSKSKSPSRLRSRSKSKSPSRSGKSPAKSEGNSMQLSTEQKEKDTVDLRPPTSTKS 385
                  55666555555554333211211333333455555555555455555566777888888888888888888777777777777777766666666666666666666778888888888865544 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1  14.0    0.0005         1       4      96 ..     291     382 ..     287     399 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0005
    TIGR01622   4 drereRsRdssreadrdrerdksrersRdrsrdRersrskerdrdfdr.rdrdrdkyrdrerrsrkrreserererekerrredevrrkrkere 96 
                  +r+++RsR+ ++ + + r++ +sr rsR++s++  r rs+++ +   r r r ++k   r ++s  ++e +  +   ++ +++d+v  +r+   
  MMETSP1061-20121228|20534_1 291 SRKSGRSRSDNNSQYESRRNFRSRSRSRSKSKSPSRLRSRSKSKSPSRlRSRSKSKSPSRSGKSPAKSEGNSMQLSTEQ-KEKDTVD-LRPPTS 382
                  6899999998877778888888888888888776666666666665665777777777777777666654444333332.3445444.444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (672 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 2534.19
//
Query:       MMETSP1061-20121228|20537_1  [L=1012]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.6e-186  616.7   0.0   7.5e-186  616.3   0.0    1.2  1  TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
   1.9e-148  493.0   0.0   2.7e-148  492.5   0.0    1.1  1  TIGR00871 zwf: glucose-6-phosphate dehydrogenase
      9e-63  210.1   0.0    1.1e-55  186.8   0.0    2.2  2  TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
    4.7e-10   37.0   0.1    8.2e-10   36.2   0.1    1.3  1  TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
    2.9e-08   31.2   0.0    4.7e-08   30.5   0.0    1.2  1  TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00873  gnd: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  616.3   0.0  9.1e-189  7.5e-186       1     467 []     527     993 ..     527     993 .. 0.98

  Alignments for each domain:
  == domain 1    score: 616.3 bits;  conditional E-value: 9.1e-189
    TIGR00873   1 diGliGlavmGknlvlniadkGfsvavynrtkektdellkeeakgkk..lvgaesieefvkslekPrkilllvkaGaavdavieellpllekgdiiidGGnslykdterrekelkekgilfvGvGvsGGeeGarkGPslmpGGskeayelvepilqkiaakve.gepcceyiGedGaGhyvkmvhnGieygdmqliaeayellkealklsaeeiaevfeeWnegeldsylieitadilkkkded.GkplvdkildaagqkGtGkWtaidaldlGvPvtlitesvfarvlsslkeervaaskllsgplaeekaedkeefiedvrealyaskivsyaqGfallkeaskeygwdlnlgeialiwrgGciirskfldkikkafeenpelenlllaeyfkdalkkaqkglrkvvakaielgipvPalsaalsfydgyrtarlpanllqaqrdyfGahtyertdkprgeffhteWle 467
                  diGl GlavmG+n++ln+a++Gf+v+v nr++ k+d+ ++ ++k+ +  l+g++s eef+++l kPrk+++lv+aG++vd++i++l  ++e+gdi+idGGn +y+++ rr +el +kgi+f+G+G+sGGeeGar+GP+lmpGG k+ay+lv+pi+++ aa+ve   pc+ y+G+ G+G yvkmvhnGieygdmqliae+y+++k++l++s++eia+vf+eWn+geldsylieit+  l+k+d++   +lvdkild++g kGtG Wta+++ +  v   +i++++ +rvlss keervaask +  p++e +  dk++ i d+r alyaski+syaqG++l+k+as+e++w++nl+e a++w gGciir+k+ld+i+ af+enp l nl++++ f++++  a++ +r++va ++++gi+ P+l  +l ++d+yr++rlpa l+qaqrd+fG htyer d+++   fht+W++
  MMETSP1061-20121228|20537_1 527 DIGLWGLAVMGQNFALNMASHGFKVCVGNRSPGKVDTTVARAKKEGDlpLIGVKSAEEFIARLSKPRKVVILVQAGKPVDETIKKLSSFMEPGDILIDGGNEWYPNSVRRSSELLHKGIQFIGMGISGGEEGARNGPALMPGGPKQAYDLVAPIFEQCAAQVErTGPCVGYLGPVGSGNYVKMVHNGIEYGDMQLIAEVYDVMKNILHMSNDEIADVFAEWNKGELDSYLIEITEICLRKQDDQtDGYLVDKILDKTGMKGTGLWTAKESAERAVAAPTIVAALDTRVLSSRKEERVAASKIFGPPKIEIA--DKDQVIADLRAALYASKICSYAQGLSLIKAASDEFSWNVNLAECARLWMGGCIIRAKLLDSIQMAFSENPTLPNLMIDPGFAEQIIGAESPWRRTVALCATSGIACPSLCGSLMYFDTYRRERLPACLTQAQRDFFGGHTYERVDMKG--RFHTAWTD 993
                  79*************************************998887763369****************************************************************************************************************899************************************************************************999888688*******************************************************988877655..8*************************************************************************************************************************************************99..9*****86 PP

>> TIGR00871  zwf: glucose-6-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  492.5   0.0  3.3e-151  2.7e-148       4     481 ..      13     489 ..      10     493 .. 0.94

  Alignments for each domain:
  == domain 1    score: 492.5 bits;  conditional E-value: 3.3e-151
    TIGR00871   4 vlvifGasGdLakkkllpalykLekegllseefkivGvarsdlskeefrkkvkealikkekeeaeekldeflqrlsyvsgd.vddkesykelaelleelekkae...tegnrlfYlalpPslfetiieqlkkaklaeegk.lsrvvvEKPfGkdlesakelnkeleevfkEeqiyriDHyLGKetvqnllvlRFanelfeplWnrryidevqitvaEelGvegRggyydkvGalrDvvqnHllqllalvamekPvsld....adeirdekvkvlkalrkiekedekvvrgqYaagevqGksvkgyleeegvd.kdsktetfvAlkleidneRWagvPfylrtGKrlaekvteiviqfkkvplnlfkesekdaepenelviriqPdegvelklnakkpglelevrevkldfsyasaf...kea.lpeaYerLlldallGdqtlfaredeveeaWkivdpilekwdankeplkeYeaGsrgPkeadellkkdgr 481
                  ++v++GasGdLakkk++p+l +L+ +g+l+++++i G+arsd+ ++ +r +++  l k e++  +  +++fl+ l+y++g+ + d e++++l++ le++e++++   ++ nrlfY+a+pP++f+  +  +k++ +++egk ++r++vEKPfG+dle+ +elnk+l++ f+E+++yriDHyLGKe+vqnl v+RF+n + e +Wn++++++v +t++E +G++gRggy+d+ G++rD++qnHllq+l+l+  e+P+  +     ++ird kv+vl+++ +i+ e  ++v+gqY          +gy ++ +++ kd +t+tf+ +++ i+n RWagvP++l++GK+l+e+++e++iq+k++p++ +  +  d+ + ne+v+r+qP e++++k n k pg +++  ++++d++y+++f   +++  p+aY rL+ld+l+G+q  f+r+de++ aWki++pil+++++++ ++ +Y +GsrgP eade++++ g 
  MMETSP1061-20121228|20537_1  13 CIVVVGASGDLAKKKTFPSLLNLFADGFLPKNVEIWGYARSDIGDDGLRDRIRPYLLKLEHSP-DV-VENFLSILRYQNGTsYGDLEAWEKLKTNLESFETSKSsvaQQYNRLFYFAIPPAVFAETASAIKATSMQDEGKgFTRLIVEKPFGRDLETFEELNKTLSSQFTEDHMYRIDHYLGKEMVQNLTVIRFSNVWTERIWNADNVKMVILTFKEPFGTDGRGGYFDQNGIIRDILQNHLLQVLTLLCCEPPTVAQgpeaGNAIRDAKVHVLNSIPPIKLE--DCVLGQY----------EGYADDPTIKnKDTNTPTFACIRIRINNPRWAGVPIILKAGKALNERKAEMRIQLKDAPAAEYLFEGYDCPR-NEIVLRLQPHEAIYVKTNVKSPGFTNQPVQTEMDLNYDTRFfahNKQcNPDAYTRLILDVLQGNQGAFVRDDELRRAWKIFTPILHQIENTNVRPIKYLQGSRGPIEADEFIARLGF 489
                  79************************************************9998888877766.55.8**********98637899**********999887653337889**************************9999*****************************************************************************************************************99863222478****************99..9******..........79******963799**********************************************999999987776.**************************************987443233589**************************************************************99765 PP

>> TIGR00872  gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.8   0.0   1.3e-58   1.1e-55       3     276 ..     528     821 ..     526     830 .. 0.83
   2 !   20.9   0.0   4.4e-08   3.6e-05     184     297 ..     857     980 ..     851     982 .. 0.82

  Alignments for each domain:
  == domain 1    score: 186.8 bits;  conditional E-value: 1.3e-58
    TIGR00872   3 lgliGlGrmGaniakrlakrghevvgydrdq....daveelkedra...egvanlkellkrlsaprvvwvmvpag.ivdavleelapllekGdividgGnsyykdslrrekelkekgihlldvGtsGGvlGkerGyclmiGGdeeafkkaeplfkdvav..eekG..ylylGeaGsGhfvkmvhnGieyGlmaalaeGlevlknsqf..dfdleevarvyrrGsvirsflldltakaleesadlee...veGrved...sGeGrwtvkaavdlgvpapvlatslqerfas.rekd 276
                  +gl Gl  mG n a ++a  g++v + +r++    ++v ++k+++    +gv + +e++ rls pr v ++v ag  vd+ +++l++++e Gdi+idgGn +y +s+rr  el +kgi+++ +G+sGG +G+++G +lm GG ++a++ + p+f++ a   e  G    ylG+ GsG +vkmvhnGieyG m+ +ae ++v+kn  +  + ++ +v   +++G  + s+l+++t++ l+++ d  +   v+ ++++    G G wt+k++ +  v+ap +  +l +r  s r+++
  MMETSP1061-20121228|20537_1 528 IGLWGLAVMGQNFALNMASHGFKVCVGNRSPgkvdTTVARAKKEGDlplIGVKSAEEFIARLSKPRKVVILVQAGkPVDETIKKLSSFMEPGDILIDGGNEWYPNSVRRSSELLHKGIQFIGMGISGGEEGARNGPALMPGGPKQAYDLVAPIFEQCAAqvERTGpcVGYLGPVGSGNYVKMVHNGIEYGDMQLIAEVYDVMKNILHmsNDEIADVFAEWNKGE-LDSYLIEITEICLRKQDDQTDgylVDKILDKtgmKGTGLWTAKESAERAVAAPTIVAALDTRVLSsRKEE 821
                  899*********************999987622224556666554333489************************99******************************************************************************987511445533579*********************************984411334666666688997.69************99875443333444443222689************************975515444 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 4.4e-08
    TIGR00872 184 alaeGlevlkns....qfdfdleevarvyrrGsvirsflldltakaleesadleeve...Grved..sGeGrw..tvkaavdlgvpapvlatslqerfasrekddfankvlaalrkefGghaekk 297
                  + a+Gl ++k +     ++ +l e ar++  G +ir+ lld ++ a+ e++ l ++    G  e+    e  w  tv  +   g++ p l+ sl+  f +  ++ +      a r  fGgh+ ++
  MMETSP1061-20121228|20537_1 857 SYAQGLSLIKAAsdefSWNVNLAECARLWMGGCIIRAKLLDSIQMAFSENPTLPNLMidpGFAEQiiGAESPWrrTVALCATSGIACPSLCGSLM-YFDTYRRERLPACLTQAQRDFFGGHTYER 980
                  67999**9999977666777899******************************99743346666532356666336777778999********97.58999999999999999********9776 PP

>> TIGR01505  tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.1     1e-12   8.2e-10       2     172 ..     528     711 ..     527     730 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1e-12
    TIGR01505   2 vgfiGlGimGkPmsknllkaGyqlvvatleqealdella..........aGaesaetakevvedadvivtmvPdsPqveevalGenGileaakkGkvlvdmssiaPleskelakavkekGidvldaPvsGGeagaiegtlsimvGGdkavfdkvkpllealgksivlv.......GenGaGqtvkvan 172
                  +g  Gl +mG+  + n++  G+++ v ++ + ++d  +a          +G +sae   +   +   +v++v +   v+e +           +G +l+d       +s++ + ++ +kGi+++   +sGGe ga++g  ++m GG k  +d v p++e  + ++  +       G+ G+G+ vk+  
  MMETSP1061-20121228|20537_1 528 IGLWGLAVMGQNFALNMASHGFKVCVGNRSPGKVDTTVArakkegdlplIGVKSAEEFIARLSKPRKVVILVQAGKPVDETIKKLSSF---MEPGDILIDGGNEWYPNSVRRSSELLHKGIQFIGMGISGGEEGARNGP-ALMPGGPKQAYDLVAPIFEQCAAQVERTgpcvgylGPVGSGNYVKMVH 711
                  6788******************************998882222222222234444433333334445566666666676666544444...469******99988888888899999********************97.79***************9998887765511111116789999998765 PP

>> TIGR01692  HIBADH: 3-hydroxyisobutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   5.7e-11   4.7e-08       3     172 ..     532     714 ..     530     746 .. 0.79

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 5.7e-11
    TIGR01692   3 GlGnmGgpmaanllkaghavrvfdlsakaveelveaGaqaaasaaeaveeadvvitmlPagkhvesvyagdegilakvkkksllidsstidvd........sarkvaeeaaakGavfldaPvsGGvggaraGtltfmvGgeaeefaraepvleamgkni.......vhaGdaGaGqaakiCnnll 172
                  Gl  mG+  a n++ +g++v v + s+ +v++ v+  ++  + +   v+ a+  i+ l   ++v  + ++ + + + +kk s +++   i +d        s r+   e  +kG +f+   +sGG  gar G  ++m Gg++++++ + p++e+ + ++        + G +G+G   k+  n +
  MMETSP1061-20121228|20537_1 532 GLAVMGQNFALNMASHGFKVCVGNRSPGKVDTTVARAKKEGDLPLIGVKSAEEFIARLSKPRKVVILVQAGKPVDETIKKLSSFMEPGDILIDggnewypnSVRRS-SELLHKGIQFIGMGISGGEEGARNGP-ALMPGGPKQAYDLVAPIFEQCAAQVertgpcvGYLGPVGSGNYVKMVHNGI 714
                  999**********************************************************999999999999999999888777776665551111111044443.345579*******************7.89********99999999887766511111114667788888888877755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1012 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.47
# Mc/sec: 2841.98
//
Query:       MMETSP1061-20121228|20536_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.25
# Mc/sec: 3236.37
//
Query:       MMETSP1061-20121228|20540_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|20538_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1635.72
//
Query:       MMETSP1061-20121228|20539_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-10   37.7   0.4    3.2e-09   35.3   0.1    2.4  2  TIGR00158 L9: ribosomal protein L9


Domain annotation for each model (and alignments):
>> TIGR00158  L9: ribosomal protein L9
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.1   7.8e-13   3.2e-09      11      52 ..      77     118 ..      66     208 .. 0.79
   2 ?   -0.8   0.0       0.1   4.1e+02       9      26 ..     256     273 ..     254     278 .. 0.91

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 7.8e-13
    TIGR00158  11 nlGkkgdvveVkdGyarnfLipkglavlatkknieklearrk 52 
                   +  kgdvv Vk+Gyarn+L+p++la  at++n ekl     
  MMETSP1061-20121228|20539_1  77 GKAYKGDVVTVKAGYARNHLVPQKLALYATPQNFEKLGIVDP 118
                  45679****************************998754433 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.1
    TIGR00158   9 vknlGkkgdvveVkdGya 26 
                  +++lG+   vv  k Gya
  MMETSP1061-20121228|20539_1 256 INRLGEYLAVVGLKGGYA 273
                  899**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.41
# Mc/sec: 914.27
//
Query:       MMETSP1061-20121228|20541_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   8.8e-127  421.6   0.2     1e-126  421.4   0.1    1.0  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    1.5e-47  160.5   0.0    1.9e-47  160.2   0.0    1.1  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    2.3e-45  153.0   6.0    2.8e-45  152.8   4.2    1.0  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    4.9e-43  145.6  13.2      7e-43  145.1   9.1    1.1  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
     0.0031   13.8   0.0     0.0068   12.7   0.0    1.5  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
  ------ inclusion threshold ------
      0.013   12.6   0.3      0.022   11.9   0.2    1.3  1  TIGR02660 nifV_homocitr: homocitrate synthase
      0.025   12.9   0.1      0.025   12.9   0.1    3.5  4  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
      0.027   12.6   0.1      0.073   11.2   0.0    1.7  1  TIGR00283 arch_pth2: peptidyl-tRNA hydrolase


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  421.4   0.1    2e-129    1e-126       2     437 .]      58     491 .]      57     491 .] 0.92

  Alignments for each domain:
  == domain 1    score: 421.4 bits;  conditional E-value: 2e-129
    TIGR01349   2 ikmPaLsPtmeeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknyklessasapkpkekaeqsaeesaesakseasaekakessseaeaskkeskdrifasPlAkklAkekgidLsavkGsGPngRivkkDiesfvpkkkesaqeaaaaktpatk....kaaapvetgeyedvplsniRkviakRLleskqtiPhyylsvevnvdkllklrkelnaaaeervklsvnDlivkAvalAlrevPevnsswtddvirkyknvDisvAvaipaGlitPivrnaeakgleeisnevkelakkArenkLkpeefqgGtftisnlGmlgikqFaaiinpPqaailavgasedkavvknkeekg..levasilsvtlsvDHRviDGavgAeflkelkkllenPielll 437
                  + +PaLsPtme+G+++ w+  eGDk  +Gdvi+ +etDkAt+d+e+q++g++akilv++g+++++v+++i ++vee+ed + a+++y +e+s+s++ p +      e    +  ++a+++ a++ +++a+a+ + +++r++asPlA+ + k+ g+d+s + G+GP+gRi+ +D+ +fvp++ + a+eaa+ +tpa +    ++aap + + ++d p+s+  + +a+RL++sk+ +Phyyl+v+v +d++l+lrkel  a++++  l v ++i+kA a+ ++ vP +n+sw+d ++r y+ vD++v v + + l tP++r++ akgl++is e+ + ++   +++++ e    Gtfti nlGm+gik+ a i+  Pq++ la+ga e++ v + ++++   ++ +  ++ t+s DHRv+DGa gA +l ++k++l  P +lll
  MMETSP1061-20121228|20541_1  58 VGLPALSPTMETGTISSWNMGEGDKFGPGDVICSVETDKATVDFEAQDDGVVAKILVDAGSEELQVGTPIMITVEEEEDAA-AFASYVVEDSSSDAAPPAPVA---E----APAPAAPEPVAAAAPAPAPAAAAPTGGRVVASPLAHMISKNMGYDISTIPGTGPDGRIIAADVREFVPSAAAEAPEAATLATPAPAqealAVAAPIPGAGFTDYPISETAREVASRLAQSKRNVPHYYLTVDVCMDNVLELRKELSGAVDNEEGLGVYEFIIKAAAKSMKAVPAANASWMDSAVRVYDSVDMNVVVGTGDDLYTPVIRDCGAKGLKAISDELNTAMAAVESGEVTSEFATMGTFTIMNLGMYGIKSCAPIVREPQSCALALGAMENRIVPNDDPDSDqiYKESVYMTATMSLDHRVVDGAAGAPWLSAFKSYLQSPSSLLL 491
                  789******************************************************************************.9999******88665543333...2....234567788888888888888888999******************************************99999996666666544356677889999*****************************************************************************************************************************999999999988776678************************************8887776544227778899********************************997 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.2   0.0   3.7e-50   1.9e-47       4     402 ..      59     491 .]      56     491 .] 0.83

  Alignments for each domain:
  == domain 1    score: 160.2 bits;  conditional E-value: 3.7e-50
    TIGR01347   4 kvPelaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegd.tvesgevla.elee.............ssaaaeaasekskeekeekaaakaek.....akeaaekk........kalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaakaakaaena........atrseeRvkmtRlrqriaerLleaknstamLttFnevdmsavmelRkkykeefekkhgvklGFmsffvkavvealkefPevnaeidgddivykkylDisvavstdkGLvvPvvRdadalsladiekeikelakkaregklaledltgGtFtitnGGvfGsllstPiinppqsaiLGmhaikeRPvavn....gkieirP.mmYlaLsYDhRliDGkeavtFLvkikelledperlll 402
                    P+l+  +  +t+ +w+   Gd+   +++i+ +etDk +++ +++ dGv++++l++ g+   ++g+ +  ++ee             +s++++a +++ +e+++++a + +++     a+     +          +sp a  + k+ g d +++++t+++gr+  +d+ +   + a++a eaa+ a++a++++        +    +  +++   +++a rL ++k ++       +v m +v elRk+   ++ ++ g  lG   f +ka+++++k++P+ na+  ++ + +++ +D+ v v+t + L +Pv+Rd+ a++l  i  e++        g+++ e  t GtFti n G++G     Pi+  pqs  L + a+++R v  +    ++i      m   +s DhR++DG     +L   k  l  p++lll
  MMETSP1061-20121228|20541_1  59 GLPALSPTMETGTISSWNMGEGDKFGPGDVICSVETDKATVDFEAQDDGVVAKILVDAGSeELQVGTPIMiTVEEeedaaafasyvveDSSSDAAPPAPVAEAPAPAAPEPVAAaapapAP-----AaaaptggrVVASPLAHMISKNMGYDISTIPGTGPDGRIIAADVREFVPSAAAEAPEAATLATPAPAQEalavaapiPGAGFTDYPISETAREVASRLAQSKRNVPHYYLTVDVCMDNVLELRKELSGAVDNEEG--LGVYEFIIKAAAKSMKAVPAANASWMDSAVRVYDSVDMNVVVGTGDDLYTPVIRDCGAKGLKAISDELNTAMAAVESGEVTSEFATMGTFTIMNLGMYGIKSCAPIVREPQSCALALGAMENRIVPNDdpdsDQIYKESvYMTATMSLDHRVVDGAAGAPWLSAFKSYLQSPSSLLL 491
                  57999999************************************************99862578888766155558888888888887555555555555555544443333332122211.....133445555899*****************************999876655433333333333333333323334455677788999*******************9988889*****************999887..8*********************************************************************99999************************************************99887454557765541577789*****************************97 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.8   4.2   5.5e-48   2.8e-45     159     586 ..      59     490 ..      13     491 .] 0.77

  Alignments for each domain:
  == domain 1    score: 152.8 bits;  conditional E-value: 5.5e-48
    TIGR01348 159 kvPdiGd.aekvevievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvG.dkvktGdlilvl.eveg.aapaaae..apakaeaaaaapaaeaeeaaaa.paaakaeakapvdantendakvdhaaPavrrlarelGvdlskvkgtgkkGrilredvqkfvkeavkra.eaaaaaaaggi....pgllPlPkvdfskfGeveevelsrikkisganlarnWvmiPhvtqfdkaditelealrkqqneeaakekegvkltvlaillkavaaalkklPkfnasldedgerlilkkyvniGvavdtPnGllvPvikdvdrkgivelarelsdlakkardkkltademqGacftisslGgiGgtaftPivnaPevai..lGvsksalePvWdgk...efePrlllPlslsydhrvidGadaarflkylselladirrll 586
                   +P +   +e +++    +  Gd+   +  +  +e+dka+++  a+  Gvv ++ v+ G +++++G  i++  e e+ aa  a+   ++ +++aa +ap aea+++aa+ p aa a a+ap  a    + +v  a+P+  ++++++G d+s + gtg++Gri   dv++fv +a   a eaa+ a+ +++    + ++P+P   f  +      ++s   +  ++ la++  ++Ph        + ++ +lrk++   a  + eg  l v ++++ka+a+ +k +P  nas   ++ r+   + v++ v v t + l  Pvi+d   kg+  ++ el +       + +t++    ++fti +lG  G ++ +Piv  P+     lG     + P  d +    ++  + +  ++s dhrv+dGa++a +l      l+ +  ll
  MMETSP1061-20121228|20541_1  59 GLPALSPtMETGTISSWNMGEGDKFGPGDVICSVETDKATVDFEAQDDGVVAKILVDAGsEELQVGTPIMITvEEEEdAAAFASYvvEDSSSDAAPPAPVAEAPAPAAPePVAAAAPAPAPAAAA-PTGGRV-VASPLAHMISKNMGYDISTIPGTGPDGRIIAADVREFVPSAAAEApEAATLATPAPAqealAVAAPIPGAGFTDY------PISETAREVASRLAQSKRNVPHYYLTVDVCMDNVLELRKELS-GAVDNEEG--LGVYEFIIKAAAKSMKAVPAANASWMDSAVRVY--DSVDMNVVVGTGDDLYTPVIRDCGAKGLKAISDELNTAMAAVESGEVTSEFATMGTFTIMNLGMYGIKSCAPIVREPQSCAlaLGAMENRIVPNDDPDsdqIYKESVYMTATMSLDHRVVDGAAGAPWLSAFKSYLQSPSSLL 490
                  556655534555555666677999999*******************************9457999997776414443134334331145566777788888888888763444555555555444.455555.6*************************************998866624555555555411116778***9999887......556666667788999999999987666666778889999999.45544444..899**********************99987765..679999*******************************9999999*********************************9765136777788888776545446888899999*****************999999998877766 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1   9.1   1.4e-45     7e-43     122     569 ..      51     484 ..      15     487 .. 0.76

  Alignments for each domain:
  == domain 1    score: 145.1 bits;  conditional E-value: 1.4e-45
    TIGR02927 122 gsgeatevempelGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspvaGtlleilaee.ddtvevGavlakiGddagaedepkeeekpekseakseek.peaaepkaekkeepkpepkaeekapaakaatektaadsspyvtplvrklakekGvdlssvkGtGvGGrirkqdvlaaa.eaaeeakeaaaaeaaaaapaapaaakkapepekaklrGttq.kvnrirqitakktveslqisaqltqvhevdvtrvaalrarakaefaekeGvnltflpffvkavvealkahpnvnasyneetkevtyhdaehlgiavdtprGllspviknagdlslpglakaiadlaarardnklkpdelsGgtftitniGseGalfdtpilvppqaailGtGaivkrprvikdedGnesiairsvvy.lpltydhrlvdGadagrflttikkrle 569
                  +  +   v +p+l  ++  Gt+++w    Gd+    + +  v tdk   +  +   G++ +il++   + ++vG+ + +  ++   +++ +       ++++s+ + p++ ++ +++   p+p ++a+ +apa+ a   ++ + +    +pl   ++k+ G d+s++ GtG  Gri   dv     +aa ea ea  a  a+ apa  a a +ap p      G t+  ++   + +a ++ +s +       +++v +  v +lr+    +  + eG  l    f++ka+ +++ka p  nas+      v  +d++++ + v t   l +pvi++ g   l  ++  ++   a   ++++  +  + gtfti n+G  G  + +pi+ +pq + l +Ga+ +r  v +d+  ++ i   sv    +++ dhr+vdGa  + +l + k  l+
  MMETSP1061-20121228|20541_1  51 SYPSHEVVGLPALSPTMETGTISSWNMGEGDKFGPGDVICSVETDKATVDFEAQDDGVVAKILVDAgSEELQVGTPIMITVEEEEDAAAFAS--Y-VVEDSSSDAApPAPVAEAPAPAA-PEPVAAAA-PAPAPAA---AAPTGGRVVASPLAHMISKNMGYDISTIPGTGPDGRIIAADVREFVpSAAAEAPEA--ATLATPAPAQEALAVAAPIPGA----GFTDyPISETAREVASRLAQSKRNVPHYYLTVDVCMDNVLELRKELSGAVDNEEG--LGVYEFIIKAAAKSMKAVPAANASWM--DSAVRVYDSVDMNVVVGTGDDLYTPVIRDCGAKGLKAISDELNTAMAAVESGEVTSEFATMGTFTIMNLGMYGIKSCAPIVREPQSCALALGAMENRI-VPNDDPDSDQIYKESVYMtATMSLDHRVVDGAAGAPWLSAFKSYLQ 484
                  3334445789*****************************************************98636899****99877652222222222..2.22222333330333444444444.66766665.7777766...33456666779***************************999976541444444443..3333333444444444444443....3333146666566789999999999999*************************99..56789********************4..456888****************************************************************************************9884.555666677776666543145899**************99998775 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.3e-05    0.0068     525     574 ..      69     118 ..      25     125 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
    TIGR01108 525 aGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGd 574
                  +G+i   ++ eGd+   G+v+  +e+ k   + +a  +G+v++ilv +G 
  MMETSP1061-20121228|20541_1  69 TGTISSWNMGEGDKFGPGDVICSVETDKATVDFEAQDDGVVAKILVDAGS 118
                  79999******************************************996 PP

>> TIGR02660  nifV_homocitr: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.2   4.3e-05     0.022      16      55 ..      97     137 ..      93     148 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.3e-05
    TIGR02660  16 agvaFsaeEKlaiAkaLdeaGvdelEvGipamge.eEraai 55 
                  a+v F+a++   +Ak+L +aG +el vG+p m + eE ++ 
  MMETSP1061-20121228|20541_1  97 ATVDFEAQDDGVVAKILVDAGSEELQVGTPIMITvEEEEDA 137
                  899***************************99651454444 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.1   4.9e-05     0.025     105     152 ..      80     128 ..      76     133 .. 0.85
   2 ?   -5.1   7.6         8   4.1e+03      44      86 ..     156     194 ..     128     198 .. 0.51
   3 ?   -0.5   0.7      0.64   3.3e+02      57      85 ..     229     255 ..     218     267 .. 0.45
   4 ?   -3.8   0.0       6.6   3.4e+03      47      59 ..     324     336 ..     308     351 .. 0.54

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.9e-05
    TIGR00531 105 GdkvkkgdvvciveAmklmneieaevagkvveilvedg.qpveygepLi 152
                  Gdk   gdv+c ve  k   + ea+  g v +ilv+ g +    g+p++
  MMETSP1061-20121228|20541_1  80 GDKFGPGDVICSVETDKATVDFEAQDDGVVAKILVDAGsEELQVGTPIM 128
                  899999*****************************99834566666655 PP

  == domain 2    score: -5.1 bits;  conditional E-value: 8
    TIGR00531  44 lqqaaapvvaqvp.avasaavpaaavaaeaakadkkehlvlsPm 86 
                   + a     a++p a +++a+ a+a+ a+aa+a + + +v sP+
  MMETSP1061-20121228|20541_1 156 APVAE----APAPaAPEPVAAAAPAP-APAAAAPTGGRVVASPL 194
                  12222....23331222333333333.34456677788888886 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.64
    TIGR00531  57 avasaavpaaavaaeaakadkkehlvlsP 85 
                  ++a+ a +aa+ a++a++++    +v +P
  MMETSP1061-20121228|20541_1 229 SAAAEAPEAATLATPAPAQE--ALAVAAP 255
                  33333333333333333222..2223333 PP

  == domain 4    score: -3.8 bits;  conditional E-value: 6.6
    TIGR00531  47 aaapvvaqvpava 59 
                  aaa  +  vpa++
  MMETSP1061-20121228|20541_1 324 AAAKSMKAVPAAN 336
                  3333333333222 PP

>> TIGR00283  arch_pth2: peptidyl-tRNA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014     0.073      51     102 ..      87     136 ..      60     139 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
    TIGR00283  51 kvvlkvkskeelleiyakakslGlsaalvrdaGrtqiaaGtitalgiGPded 102
                   v+ +v+  +  ++   +a++ G++a+++ daG  +++ Gt  ++++  +ed
  MMETSP1061-20121228|20541_1  87 DVICSVETDKATVD--FEAQDDGVVAKILVDAGSEELQVGTPIMITVEEEED 136
                  57777776666555..57899********************99998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 1800.18
//
Query:       MMETSP1061-20121228|20581_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|20577_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1373.89
//
Query:       MMETSP1061-20121228|20589_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 217.78
//
Query:       MMETSP1061-20121228|20594_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    7.2  14.0        1.4    7.1   9.7    1.0  1  TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family
        1.4    7.6  10.9        1.6    7.4   7.5    1.0  1  TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM


Domain annotation for each model (and alignments):
>> TIGR02898  spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   9.7   0.00066       1.4      24      62 ..       4      42 ..       1      48 [. 0.43

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00066
    TIGR02898 24 dnnnveeknveekaangentakdtnqgeklevadkiake 62
                 ++nn+++ n +++++n++n+++++ +++   +a  +a  
  MMETSP1061-20121228|20594_1  4 NSNNNNNSNSKNNNNNSNNKNNNNSNTTTAAAAAAAAAD 42
                 344444445544444555544444443333333333333 PP

>> TIGR03824  FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   7.5   0.00078       1.6       4      45 ..       4      45 ..       2      49 .. 0.64

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00078
    TIGR03824  4 ntssslaavaalsqtksksaakansaaakaaasavesdsvsl 45
                 n+++++++++++++++s++++++ns++++aaa+a+++ +v++
  MMETSP1061-20121228|20594_1  4 NSNNNNNSNSKNNNNNSNNKNNNNSNTTTAAAAAAAAADVTV 45
                 456666666666666777777777766666666667777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|20598_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 437.96
//
Query:       MMETSP1061-20121228|20596_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.28    9.1   4.0        5.5    5.0   0.1    3.2  3  TIGR01495 ETRAMP: early transcribed membrane protein (ETRAMP) family
        1.7    7.3   8.7       0.87    8.3   0.8    3.4  3  TIGR01167 LPXTG_anchor: LPXTG-motif cell wall anchor domain


Domain annotation for each model (and alignments):
>> TIGR01495  ETRAMP: early transcribed membrane protein (ETRAMP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.0   0.1    0.0027       5.5      61      83 ..     250     273 ..     242     275 .. 0.79
   2 ?   -2.3   0.0      0.49     1e+03      71      82 ..     383     394 ..     370     412 .. 0.54
   3 ?    3.8   0.1    0.0061        13      58      83 ..     481     506 ..     465     508 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0027
    TIGR01495  61 lallvgaavGl.glylkkknkede 83 
                  + +  gaa+G  g+yl++kn+ ++
  MMETSP1061-20121228|20596_1 250 IGAFAGAAMGVgGMYLYNKNQAKK 273
                  5567789999945*******9987 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.49
    TIGR01495  71 lglylkkknked 82 
                  +g+ l kk  ++
  MMETSP1061-20121228|20596_1 383 IGYLLDKKFFKK 394
                  444444443322 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.0061
    TIGR01495  58 asglallvgaavGlglylkkknkede 83 
                  ++g+a+  +a+vG +  +k++n++++
  MMETSP1061-20121228|20596_1 481 VAGAAAVAAAGVGVAHVVKSNNDNKN 506
                  6899999********99999998876 PP

>> TIGR01167  LPXTG_anchor: LPXTG-motif cell wall anchor domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   0.8   0.00042      0.87       4      31 ..     242     268 ..     242     271 .. 0.73
   2 ?    1.1   0.1      0.08   1.6e+02      13      31 ..     372     390 ..     367     393 .. 0.75
   3 ?    0.3   0.0      0.14   2.8e+02      12      26 ..     478     492 ..     473     499 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00042
    TIGR01167   4 kTGessnslllllGllllglaglllrkr 31 
                  +TG+++ ++ +++G+++ ++ g +l+ +
  MMETSP1061-20121228|20596_1 242 STGTTGAIIGAFAGAAMGVG-GMYLYNK 268
                  59*999*********55555.5555655 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.08
    TIGR01167  13 llllGllllglaglllrkr 31 
                  ++++G++  g++g+ll k+
  MMETSP1061-20121228|20596_1 372 AAAAGAATGGAIGYLLDKK 390
                  5677887777799998887 PP

  == domain 3    score: 0.3 bits;  conditional E-value: 0.14
    TIGR01167  12 lllllGllllglagl 26 
                  ++ ++G++ +++ag+
  MMETSP1061-20121228|20596_1 478 AIGVAGAAAVAAAGV 492
                  677888877777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 2615.03
//
Query:       MMETSP1061-20121228|20635_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 865.26
//
Query:       MMETSP1061-20121228|20641_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 472.38
//
Query:       MMETSP1061-20121228|20647_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 327.10
//
Query:       MMETSP1061-20121228|20650_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|20656_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|20682_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1325.89
//
Query:       MMETSP1061-20121228|20675_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|20684_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1292.10
//
Query:       MMETSP1061-20121228|20705_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1337.11
//
Query:       MMETSP1061-20121228|20713_1  [L=254]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (254 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1197.33
//
Query:       MMETSP1061-20121228|20709_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.36
# Mc/sec: 1224.57
//
Query:       MMETSP1061-20121228|20734_1  [L=528]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (528 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2403.11
//
Query:       MMETSP1061-20121228|20757_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|20768_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 533.46
//
Query:       MMETSP1061-20121228|20761_1  [L=1047]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1400.4   0.0          0 1400.2   0.0    1.0  1  TIGR00461 gcvP: glycine dehydrogenase
    5.6e-05   20.0   1.3    0.00012   18.9   0.0    2.1  3  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
    0.00037   17.3   0.0     0.0014   15.4   0.0    1.8  2  TIGR01979 sufS: cysteine desulfurase, SufS family


Domain annotation for each model (and alignments):
>> TIGR00461  gcvP: glycine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1400.2   0.0         0         0       1     939 []      75    1030 ..      75    1030 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1400.2 bits;  conditional E-value: 0
    TIGR00461    1 rhlGpdeaeqkkmlktlGfddlnalieqlvpkdirlarplkleapakeyealaelkkiasknkkvksyiGkGyyatilppviqrnllenpgwytaytpyqpeisqGrleallnfqtvvldltGlevanaslldegtaaaeamalsfrv....skkkankfvvakdvhpqtlevvktraeplgievivddaskvkka.vdvlGvllqypatdGeil....dykalidelksrkalvsvaadllaltlltppgklGadivlGsaqrfGvplGyGGphaaffavkdeykrklpGrivGvskdalGntalrlalqtreqhirrdkatsnictaqvllanvaslyavyhGpkGlkniarrifrltsilaaglkrknyelrnk...tyfdtltvevgek..aasevlkaaeeaeinlravvltevgialdetttkedvldll.kvlagkdnlglsseels.edvansfpaellrddeilrdevfnryhsetellrylhrleskdlalnqsmiplGsctmklnataemlpitwpefaeihpfapaeqveGykeliaqlekwlveitGfdaislqpnsGaqGeyaGlrvirsyhesrgeehrniclipasahGtnpasaamaGlkvvpvkcdkeGnidlvdlkakaekagdelaavmvtypstyGvfeetirevidivhrfGGqvyldGanmnaqvGltspgdlGadvchlnlhktfsiphGGGGpgmgpigvkshlapflpktdlvsvv..eleges....ksigavsaapyGsasilpisymyikmmGaeGlkkasevailnanylakrlkdaykilfvgrdervahecildlrelkekagiealdvakrlldyGfhaptlsfpvaGtlmveptesesleeldrfidamiaikeeidavkaGeiklednilknaphslqslivaewadpysreeaaypapvlkyfkfwptvarlddtyGdrnlvcsc 939 
                   rh+Gp + e   ml+t+Gf+++++l++  vp di   +pl le p +e eal++++k a++nk++ksyiG+Gyy+t++p vi+rn+lenpgwytaytpyq+eisqGrle llnfqt+v+dltGl++a asllde++aaaeam ++f +     k+k+nkf++++dvhpqt+ +++tra ++giev+++++s+v ++ +d  G+++qyp t G++     +y++++ ++++  a+v  a+dllalt + pp+  Gadi++GsaqrfGvp+G+GGpha f+++ d+y rk+pGri+Gv+ d+ G++ lr+a+qtreqhirrdkatsnictaq+llan+a+ ya+yhGp Gl +i  r++ l+ + a  l   +++l ++    +fdt+tv+v+ k  +a+ev+  a ea+ n+r v+ t+v++++ e +t++d+  ll + +  +      ++    ++  +++p++  r+ eil++++f+++ set++lryl++le+kdl+ln+smi lGsctmklnat em+p+twpef++ihpfap +qv+Gy+eli +l+ +l+eitGf a+s qpnsGa GeyaGl +i++y+e++ge+hrniclip+sahGtnpasa+maG+kvv+v+ d+eGnid++dl+ak ek+ ++laa mvtypst+Gvfee+i+e+i  +h+ GGqvy+dGanmnaqvGltspg +Gadvchlnlhktf+iphGGGGpg+g igv +hlapflp++     +  +l g++    k+ ga++ ap+Gsa+ilpis+myikm+G+ Glk a+  ailnany+a+rl+ ay++lfvg+++++ahe+ildlr+lk  +g+ ++dvakrl+dyGfh+pt+s+pvaGtlmveptese+l+eldrf+dam++i++eid + +G+i  ed +l+naph++++l++ +w  py+re+a+ypap++k +kfwpt +r+d++yGdrnlvc+c
  MMETSP1061-20121228|20761_1   75 RHMGPRSEESISMLQTIGFESFDELVKSTVPADIMTDKPLVLEDPMSESEALSQIRKFADRNKVMKSYIGQGYYDTQVPTVILRNILENPGWYTAYTPYQAEISQGRLEMLLNFQTLVVDLTGLPMAVASLLDESSAAAEAMQMCFALkggrGKNKKNKFFISDDVHPQTVGLIETRAVAIGIEVVKGNHSEVDFSgKDFCGAIVQYPNTYGAVEsdgeSYESFTARAHEADAMVIAATDLLALTKMAPPSSWGADIAVGSAQRFGVPMGFGGPHAGFLSTSDKYSRKMPGRIIGVTVDSSGKPCLRMAMQTREQHIRRDKATSNICTAQALLANMAAAYAIYHGPEGLAEIGGRVHALARVAARELTAAGFKLARNesgEFFDTITVDVSSKglTAAEVQAGAVEAGANVRVVDETTVSVSMGEGITRDDLFALLcHAFRLEA-----PDVSAeDESLTTIPSKYAREGEILTHPIFRQHRSETQMLRYLKSLENKDLSLNHSMISLGSCTMKLNATSEMIPVTWPEFCNIHPFAPHDQVKGYHELIEDLNTDLAEITGFAAVSAQPNSGATGEYAGLLAIKDYLEAKGEGHRNICLIPKSAHGTNPASAVMAGMKVVVVDNDDEGNIDMEDLTAKIEKHRENLAAFMVTYPSTFGVFEEGIKEIIGSIHEAGGQVYMDGANMNAQVGLTSPGLIGADVCHLNLHKTFCIPHGGGGPGVGSIGVAAHLAPFLPGHVSDPEAsgKLCGNElcvpKTSGAIAGAPFGSAAILPISWMYIKMLGEPGLKLATGQAILNANYMAARLNGAYDVLFVGKNGQCAHEFILDLRPLKSSTGVTEEDVAKRLQDYGFHSPTMSWPVAGTLMVEPTESEDLQELDRFCDAMLSIRKEIDDIGSGRIAYEDSPLHNAPHTMDDLMADKWDRPYTREVACYPAPWIKSNKFWPTCGRVDNVYGDRNLVCTC 1030
                   9***********************************************************************************************************************************************998743335899*************************************99836777*************988889*********************************************************************************************************************************************************97652337*********9984346679999****************************9988625566643.....344330455679**********************************************************************************************************************************************************************************************************************************************************************************8655444113334332233889***********************************************************************************************************************************************************************************************************9 PP

>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.14     2e+02     271     312 ..     408     447 ..     382     451 .. 0.77
   2 !   18.9   0.0   8.6e-08   0.00012       2     160 ..     553     716 ..     552     751 .. 0.76
   3 ?   -3.9   0.0      0.75     1e+03     264     306 ..     829     873 ..     824     878 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.14
    TIGR03812 271 asaaatyavlkylGreGyrkvveecmeltrylveelkklgle 312
                  a+ aa+ya+  y+G eG  ++  ++  l+r+ ++el + g++
  MMETSP1061-20121228|20761_1 408 ANMAAAYAI--YHGPEGLAEIGGRVHALARVAARELTAAGFK 447
                  566777776..99***********999999999999988876 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 8.6e-08
    TIGR03812   2 eeevleelkearseDlkyedgrilgsmCtkphpiavkvvk....kfletn.LGDpgLfkGtkkleeevvellgellhlkealGyivsGGteanilalraaknlakeekkekpei.ivPesahfsfekaaellglelvkaeldeeykvdvkkveeliedntiglvg 160
                  e ++l++lk+ +++Dl+ ++  i    Ct+  + + ++      +f +   +      kG ++l e++ + l+e+    ++  +  sG t      l a+k+  +++ +++ +i ++P+sah +    a + g+++v ++ d+e ++d++++ ++ie++   l +
  MMETSP1061-20121228|20761_1 553 ETQMLRYLKSLENKDLSLNHSMISLGSCTMKLNATSEMIPvtwpEFCNIHpFAPHDQVKGYHELIEDLNTDLAEITGFAAVSAQPNSGATG-EYAGLLAIKDYLEAKGEGHRNIcLIPKSAHGTNPASAVMAGMKVVVVDNDDEGNIDMEDLTAKIEKHRENLAA 716
                  7788999999999999998888877779988888777653111145554413445677899999999999999999999999998888885.4455666666666666655555279****************************************98866655 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 0.75
    TIGR03812 264 lvGtrsGasaa..atyavlkylGreGyrkvveecmeltrylveel 306
                  ++G+  G +a+   ++  +k lG+ G +    +++ +++y++ +l
  MMETSP1061-20121228|20761_1 829 IAGAPFGSAAIlpISWMYIKMLGEPGLKLATGQAILNANYMAARL 873
                  566666666552246888999999999999999988888887766 PP

>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.14   1.9e+02     166     229 ..     279     346 ..     276     372 .. 0.76
   2 !   15.4   0.0     1e-06    0.0014     131     224 ..     682     779 ..     674     804 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.14
    TIGR01979 166 thvsNvlGtvn....pveeiiklahevgalvlvDgaqavphlkvdvkeldvDflvfsgHKllgptGiG 229
                  ++  N+ G+v+      e  +++ahe++a+v+  +   +  +    +++++D +v s+ ++  p+G G
  MMETSP1061-20121228|20761_1 279 VQYPNTYGAVEsdgeSYESFTARAHEADAMVIAATDLLALTKMAPPSSWGADIAVGSAQRFGVPMGFG 346
                  555666666642111467789999999999887777777777778899************99999987 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1e-06
    TIGR01979 131 rkgaklkvieldedgtldleeleelltektklva.it.hvsNvlGtv.npveeiiklahevgalvlvDgaqavphlkvd.vkeldvDflvfsgHKllg 224
                  + g+k+ v++ d++g++d+e+l+ +++++   +a ++     + G+  + ++eii  +he+g +v +Dga    +  +     +++D   +  HK + 
  MMETSP1061-20121228|20761_1 682 MAGMKVVVVDNDDEGNIDMEDLTAKIEKHRENLAaFMvTYPSTFGVFeEGIKEIIGSIHEAGGQVYMDGANMNAQVGLTsPGLIGADVCHLNLHKTFC 779
                  568889999999***********999887655541331344677876156********************9877766541557899999999999653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1047 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.15s 00:00:00.73 Elapsed: 00:00:00.51
# Mc/sec: 2709.66
//
Query:       MMETSP1061-20121228|20788_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 743.31
//
Query:       MMETSP1061-20121228|20799_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-24   84.1   0.0      3e-24   84.0   0.0    1.0  1  TIGR02039 CysD: sulfate adenylyltransferase, small subunit


Domain annotation for each model (and alignments):
>> TIGR02039  CysD: sulfate adenylyltransferase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   7.2e-28     3e-24       1      47 [.       5      51 ..       5      53 .] 0.97

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 7.2e-28
    TIGR02039  1 lraleaeaihilrevaaeferPvllysiGkdssvllhlarkafyPgk 47
                 l++leae+ihi+revaaef++Pv+lys+Gkds+v+lhlarkaf Pgk
  MMETSP1061-20121228|20799_1  5 LKQLEAESIHIIREVAAEFDNPVMLYSVGKDSAVMLHLARKAFAPGK 51
                 79*******************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1061-20121228|20804_1  [L=163]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (163 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 827.47
//
Query:       MMETSP1061-20121228|20831_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   12.8   0.1      0.035   12.6   0.1    1.1  1  TIGR03398 plc_access_R: phospholipase C accessory protein PlcR


Domain annotation for each model (and alignments):
>> TIGR03398  plc_access_R: phospholipase C accessory protein PlcR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   8.6e-06     0.035      48      96 ..      23      71 ..      15      77 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.6e-06
    TIGR03398 48 lsaaLladaeaDartReAaidslraqlkdyavqevapsPaeeerlleYa 96
                  +  ++++ +a   +ReA ++sl ++  d +  e+++s ++e+ l ++ 
  MMETSP1061-20121228|20831_1 23 SVRSITPESDASGERREASEQSLFMDEADKSHTEHSASRSSENELCNFD 71
                 55678889999999***************************99988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 540.53
//
Query:       MMETSP1061-20121228|20876_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    5.2   6.6        1.3    5.2   4.6    1.0  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   4.6   0.00031       1.3     100     135 ..      23      58 ..       2      61 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00031
    TIGR03490 100 epkkpdkkpqadepnndhadqknnnkvdfsdldklk 135
                  e+ + d+ ++ d++++++ d ++n+++++ +ld+l 
  MMETSP1061-20121228|20876_1  23 EQGRNDDGDDNDDNDGNDDDGDENQNDNDTKLDRLP 58 
                  555667677777777889999*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|20878_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1834.65
//
Query:       MMETSP1061-20121228|20909_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 469.29
//
Query:       MMETSP1061-20121228|20903_1  [L=993]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-12   43.0   0.0    4.8e-12   42.4   0.0    1.2  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.5e-07   27.8   0.0    1.9e-06   25.4   0.0    2.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    0.00021   17.9   0.0    0.00041   16.9   0.0    1.4  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    0.00027   19.4   0.1     0.0017   16.8   0.0    2.4  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    0.00049   17.7   0.1      0.024   12.2   0.0    2.8  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0   5.9e-15   4.8e-12     569     694 ..     689     814 ..     661     827 .. 0.89

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 5.9e-15
    TIGR02917 569 palaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllke 694
                   ++aL++yy  ++el+k+ ++  + ++l p  p+++  lg++ ++ +d ++a+ sf +++++ pd   a   +a+++  +kn + A  +l ++L+l+ + ++    + +  l+ ++ +eA++    
  MMETSP1061-20121228|20903_1 689 AYIALGKYYYDENELDKSASAYTKGLKLRPLIPSVWFRLGTIHMKLGDWDSALTSFSEVVQQRPDACDAWSNVAAIHMHNKNPQSAYPALVESLKLNRNSWQNWESKLHVCLDLQKYDEAVQACNM 814
                  479************************************************************************************************999999999999999999999876655 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.15   1.2e+02     138     167 ..     629     658 ..     624     683 .. 0.72
   2 !   25.4   0.0   2.4e-09   1.9e-06      55     191 ..     676     811 ..     641     823 .. 0.86

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.15
    TIGR02521 138 yeNaglcalkagdtekaekyltralkidpk 167
                  +  a+ c+++ag++ kae+  ++ + ++++
  MMETSP1061-20121228|20903_1 629 WDEAVECYKRAGKDSKAEEIVKERISMNET 658
                  677889************999998888754 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 2.4e-09
    TIGR02521  55 ekAleldp.kdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAral 191
                   kA+el     + a+ al+ yy ++ el+k + ++ k+l+l p  ++v    Gt   + ++ ++A + f++ +++   +   ++++N++ + ++ ++ + a  +l ++lk+++++ +   +  ++ l+ ++y eA ++
  MMETSP1061-20121228|20903_1 676 AKAIELSRgRFSMAYIALGKYYYDENELDKSASAYTKGLKLRPLIPSVWFRLGTIHMKLGDWDSALTSFSEVVQQR--PDACDAWSNVAAIHMHNKNPQSAYPALVESLKLNRNSWQNWESKLHVCLDLQKYDEAVQA 811
                  567776541457899****************************************9**************998765..8999*******************************9999988888888888888888765 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0     5e-07   0.00041     309     488 ..     628     810 ..     615     824 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5e-07
    TIGR00990 309 syeeaarafekaldlgelke..kealalelrGifkflkgkheealadlsksield.PrltqsyikrasinlelgdsdkaeedfdkalkkdsedsdiyyhraqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPdvynyyaellldknkfdeale 488
                   ++ea + +++a + ++ +e  ke ++++ +  + +  g+  +  a   k+iel   r++ +yi       + ++ dk    + k lk+ +  +++++  + +h+ +g+++ a   +   ++  pd   ++  +a +  +  + +s+   + ++ k   +  +  +    + ld +k+dea++
  MMETSP1061-20121228|20903_1 628 YWDEAVECYKRAGKDSKAEEivKERISMNETPRMWMALGDITNDPAHYAKAIELSrGRFSMAYIALGKYYYDENELDKSASAYTKGLKLRPLIPSVWFRLGTIHMKLGDWDSALTSFSEVVQQRPDACDAWSNVAAIHMHNKNPQSAYPALVESLKLNRNSWQNWESKLHVCLDLQKYDEAVQ 810
                  567777777777666655543378888888888888889999999999999999724788889999999999999999999999999999999999999999999999999999999988888888877777777776666666666655555555544444444444445556666666655 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       2.4     2e+03      64      95 ..     647     678 ..     628     680 .. 0.73
   2 !   16.8   0.0   2.1e-06    0.0017      43     110 ..     691     755 ..     686     763 .. 0.91
   3 ?   -3.2   0.0       3.3   2.7e+03      84      99 ..     800     815 ..     767     823 .. 0.63

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 2.4
    TIGR02795  64 evvkkypksekapdallklgeslqelgqkekA 95 
                  e+vk+  + + +p +++ lg + ++  + +kA
  MMETSP1061-20121228|20903_1 647 EIVKERISMNETPRMWMALGDITNDPAHYAKA 678
                  56677777888999999999988776666655 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 2.1e-06
    TIGR02795  43 YwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkss 110
                    lG+ +y +++++++a a+ + +k     +  p  +++lg++  +lg++++A + ++ev+++ P++ 
  MMETSP1061-20121228|20903_1 691 IALGKYYYDENELDKSASAYTKGLK---LRPLIPSVWFRLGTIHMKLGDWDSALTSFSEVVQQRPDAC 755
                  569******************9999...67789******************************99875 PP

  == domain 3    score: -3.2 bits;  conditional E-value: 3.3
    TIGR02795  84 eslqelgqkekAkktl 99 
                    lq+ +++ +A+++l
  MMETSP1061-20121228|20903_1 800 LDLQKYDEAVQACNML 815
                  3444445555555554 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0      0.26   2.1e+02      92     119 ..     632     659 ..     617     667 .. 0.69
   2 !   12.2   0.0   2.9e-05     0.024      56     117 ..     691     752 ..     685     762 .. 0.90
   3 ?   -1.9   0.0      0.66   5.4e+02      61      82 ..     798     819 ..     784     824 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.26
    TIGR02552  92 aaecllalgekeeAlkaLklaieiaeek 119
                  a ec+   g+  +A++  k  i + e  
  MMETSP1061-20121228|20903_1 632 AVECYKRAGKDSKAEEIVKERISMNETP 659
                  4567777777777777777777666655 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2.9e-05
    TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiae 117
                  ++L+  +   +e ++ + aY+  ++l++  p++ ++++  +++lg+  +Al  +  +++   
  MMETSP1061-20121228|20903_1 691 IALGKYYYDENELDKSASAYTKGLKLRPLIPSVWFRLGTIHMKLGDWDSALTSFSEVVQQRP 752
                  78999999999*******************************************99998655 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.66
    TIGR02552  61 clqalkeyeeAiaaYalaaald 82 
                  ++  l++y+eA++a  + + l+
  MMETSP1061-20121228|20903_1 798 VCLDLQKYDEAVQACNMLLDLK 819
                  6778999999999887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.42
# Mc/sec: 3120.60
//
Query:       MMETSP1061-20121228|20910_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 3097.34
//
Query:       MMETSP1061-20121228|20946_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1721.36
//
Query:       MMETSP1061-20121228|20947_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       365  (0.088981); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1425.48
//
Query:       MMETSP1061-20121228|20968_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 821.27
//
Query:       MMETSP1061-20121228|20973_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.48
# Mc/sec: 1440.88
//
Query:       MMETSP1061-20121228|20978_1  [L=923]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-59  199.7   0.0    4.6e-56  188.0   0.0    3.4  3  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
  ------ inclusion threshold ------
       0.02   11.8   0.1       0.13    9.2   0.0    1.9  2  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.0   0.0   2.2e-59   4.6e-56      45     348 ..     177     503 ..     160     511 .. 0.83
   2 !    4.7   0.0   0.00095       1.9     386     433 ..     610     657 ..     532     660 .. 0.92
   3 ?   -3.1   0.0      0.22   4.6e+02      81     102 ..     900     921 ..     896     922 .. 0.86

  Alignments for each domain:
  == domain 1    score: 188.0 bits;  conditional E-value: 2.2e-59
    TIGR01982  45 keslgerlrlaleelGPifiKlGQvlstRaDllpee...iaeeLslLqdkv.ppfdlkaarkvieaelgk.pveelFaefeekPlAaASiaQvhkAvlveg.keVavKvlRPgiekkieadikllell.aklvekllpeakr...................lrptevvkefektlkeEldlrlEaanaselkenfknd...kklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlael 348
                  ++++++ l + + elGP+fiK+GQ lstR+Dllp++   +a  L++Lqd+v p+fd ++ar++i ++lg+ +++ +F++++e P+A+ASi+Qv++ +l ++  eVavKv+RP++ + ++ d+ +++++ a l +k++++ ++                    + + +v+   +   +Eld+r+Ea++++ +++++ +    + +  Pev+ el s +vlt++w+dg  +s   +      d  +l    ++  l++ l+ g  H D+HpGN+l + dgk+ +lD G+v  + ++ +  l e +  +  ++y+ v + ++++ +vp+d ++++l
  MMETSP1061-20121228|20978_1 177 ERKRSKELVDLITELGPTFIKVGQALSTRTDLLPSDkayYAIGLAELQDAVePSFDSQEARQIIRDDLGIqNLDDIFEYLSEDPVASASIGQVYRGKLRKNgIEVAVKVQRPNVLESVSLDLYVMRSIlAPLWSKFVHRREKkknkdiagdgdstsikksnTDSVSLVDAWGEGFVNELDYRAEANATKAFTKAMDERglgSVVFAPEVIDELSSMHVLTTKWVDGERLSTSDES-----DVPRLCGVALNAYLTMLLDTGTLHCDPHPGNLLRTPDGKLCILDWGMVLDVPNDLQLSLLEFIADLNAENYEDVPDDLVKLKFVPED-KIDNL 503
                  456889999*************************994434567********567****************99*************************976559********************99874355555544333220011211111111111111445678999999999*******************99744367999********************988765543.....7779*********************************************************************************96.45555 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.00095
    TIGR01982 386 evqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklikkklspk 433
                  +++  ++ + +++ t+EG+g + d + +++k   p++ k + +  sp+
  MMETSP1061-20121228|20978_1 610 AIPDYFVYMSRAFATLEGIGLSSDENYSILKECYPYLAKRLLSDDSPR 657
                  56778999****************************999887776666 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.22
    TIGR01982  81 iaeeLslLqdkvppfdlkaark 102
                   a+ L+ L d++ +fd + a++
  MMETSP1061-20121228|20978_1 900 GAQRLEALADAINSFDNELAKR 921
                  6899*************99986 PP

>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.045        93      50      90 ..     378     420 ..     369     426 .. 0.80
   2 ?    9.2   0.0   6.4e-05      0.13     143     176 ..     428     462 ..     421     491 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.045
    TIGR02721  50 alklaPkvi..lvneewllvewleGevitkdefvaldellela 90 
                   + +aP+vi  l   + l   w++Ge +++ ++  ++ l+ +a
  MMETSP1061-20121228|20978_1 378 SVVFAPEVIdeLSSMHVLTTKWVDGERLSTSDESDVPRLCGVA 420
                  566899998334456788899*****99999999999999887 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 6.4e-05
    TIGR02721 143 plklallHlDvhaeNlvkteqG.lklIDWEYAsdg 176
                   l    lH D h +Nl++t++G l ++DW    d 
  MMETSP1061-20121228|20978_1 428 LLDTGTLHCDPHPGNLLRTPDGkLCILDWGMVLDV 462
                  5667789***************55677**766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (923 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.46
# Mc/sec: 2648.39
//
Query:       MMETSP1061-20121228|20984_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1515.43
//
Query:       MMETSP1061-20121228|21022_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 1024.65
//
Query:       MMETSP1061-20121228|21092_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 298.71
//
Query:       MMETSP1061-20121228|21080_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-82  275.8   0.0      2e-82  275.4   0.0    1.0  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    7.7e-44  148.3   0.2    1.6e-22   77.9   0.2    4.0  3  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.2e-42  143.2   1.4    7.3e-11   39.2   0.0    4.0  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
      9e-38  127.8   0.4    1.9e-18   64.5   0.1    4.0  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    4.2e-37  125.6   0.5    5.5e-10   37.1   0.0    4.1  4  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.1e-36  123.5   0.0    3.7e-15   54.0   0.0    3.8  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.8e-35  119.3   0.9      6e-16   56.3   0.2    3.9  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    5.9e-34  115.2   0.0    7.9e-11   39.6   0.0    4.3  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    8.3e-34  114.7   0.0    5.3e-10   36.0   0.0    4.0  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    9.6e-34  114.7   0.0    3.3e-12   44.2   0.0    4.1  3  TIGR01978 sufC: FeS assembly ATPase SufC
    1.5e-32  111.0   0.0    1.9e-09   35.3   0.0    4.1  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    4.3e-32  109.4   0.0    5.4e-10   37.1   0.0    4.2  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.7e-31  107.5   0.0    1.6e-12   45.5   0.0    4.2  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    2.9e-31  106.5   0.0    1.2e-16   58.7   0.0    3.4  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    4.1e-31  106.1   0.2    1.7e-08   32.0   0.0    4.2  4  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      6e-31  105.4   0.2    1.1e-08   32.0   0.0    4.0  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.6e-30  104.3   0.1    2.6e-10   37.9   0.0    4.1  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.3e-29  100.3   0.0    1.7e-07   28.8   0.0    4.2  4  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.8e-28   96.3   0.0      4e-09   34.2   0.0    4.5  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.2e-26   91.6   0.0      3e-13   47.7   0.0    4.0  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.7e-26   90.0   0.0    9.4e-11   39.5   0.0    4.1  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    6.6e-26   89.2   2.3    7.2e-11   39.7   0.0    4.1  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    1.7e-25   87.8   0.5    8.7e-10   36.2   0.0    4.1  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    7.7e-25   85.5   0.0    2.1e-09   35.0   0.0    4.2  3  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.3e-24   84.8   0.0      7e-09   33.4   0.0    4.2  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.9e-24   83.1   0.0    2.2e-13   47.1   0.0    3.7  3  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.2e-24   83.6   0.0    2.8e-08   31.4   0.0    4.2  4  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    5.3e-24   83.0   1.2    7.2e-09   33.5   0.2    4.0  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.1e-23   81.8   0.0    1.2e-08   32.4   0.0    4.1  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    5.3e-23   79.8   0.0    3.6e-06   24.5   0.0    4.2  4  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    4.3e-22   76.2   0.0      6e-06   22.9   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    5.9e-22   76.0   0.2    2.8e-07   27.7   0.0    4.1  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.9e-21   73.2   0.0    5.8e-08   29.3   0.0    4.1  4  TIGR00958 3a01208: antigen peptide transporter 2
    3.1e-21   73.5   0.0      4e-05   20.3   0.0    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.5e-21   73.0   0.0    9.2e-06   22.2   0.0    4.0  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    6.5e-21   72.1   0.0    1.5e-06   24.6   0.0    4.1  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    4.7e-20   70.0   0.0    5.8e-08   30.4   0.0    4.2  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    7.5e-20   68.9   0.8    3.9e-06   23.9   0.0    4.3  3  TIGR01288 nodI: nodulation ABC transporter NodI
    2.2e-19   67.3   0.9      8e-08   29.1   0.2    4.0  3  TIGR00955 3a01204: pigment precursor permease
    2.3e-18   63.8   0.0      1e-07   28.7   0.0    4.1  3  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.8e-18   63.9   0.4    1.7e-08   31.7   0.0    4.2  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    7.4e-18   62.2   0.0      3e-05   20.5   0.0    4.0  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      2e-17   61.2   0.0    7.3e-06   23.4   0.0    4.2  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    2.1e-17   61.0   0.1    8.4e-05   19.7   0.0    4.1  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.4e-17   59.6   0.0    5.8e-05   18.5   0.0    4.0  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    3.2e-17   60.4   1.2    4.5e-06   23.7   0.0    4.2  4  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.3e-16   57.6   0.0    1.3e-05   22.2   0.0    4.1  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    3.3e-15   53.4   0.0    4.2e-06   23.3   0.0    3.8  4  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      9e-15   52.0   0.0    0.00015   18.2   0.0    3.9  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    1.1e-14   52.2   0.0    1.9e-07   28.4   0.0    4.0  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    5.8e-14   47.8   0.0    6.7e-05   17.7   0.0    3.1  3  TIGR01257 rim_protein: rim ABC transporter
      6e-14   48.3   0.4    1.8e-05   20.2   0.0    3.8  4  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    8.8e-13   46.1   0.0    4.4e-10   37.3   0.0    2.9  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
      2e-10   37.8   0.0     0.0026   14.3   0.0    3.9  3  TIGR01192 chvA: glucan exporter ATP-binding protein
    6.6e-10   35.1   0.2     0.0019   13.6   0.0    4.0  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.7e-09   34.3   0.3     0.0034   13.4   0.0    3.9  4  TIGR00630 uvra: excinuclease ABC subunit A
    2.4e-06   23.4   1.2     0.0005   15.7   0.0    3.6  4  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    2.4e-06   24.2   0.0      0.025   10.9   0.0    3.4  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      1e-05   22.8   0.1      0.035   11.1   0.0    2.4  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
    2.4e-05   21.4   0.2      0.023   11.6   0.1    2.4  2  TIGR00750 lao: LAO/AO transport system ATPase
    2.9e-05   19.8   0.0      0.024   10.1   0.0    3.3  3  TIGR00606 rad50: rad50
    8.9e-05   20.2   0.1       0.18    9.4   0.0    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00033   16.5   0.2       0.11    8.1   0.0    2.8  3  TIGR00618 sbcc: exonuclease SbcC
     0.0019   15.7   0.3          1    6.8   0.0    2.4  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
  ------ inclusion threshold ------
      0.016   12.7   0.0       0.69    7.4   0.0    2.4  2  TIGR00455 apsK: adenylylsulfate kinase
      0.031   10.7   0.0      0.062    9.7   0.0    1.4  1  TIGR00368 TIGR00368: Mg chelatase-like protein
      0.042   10.1   9.8      0.082    9.1   0.5    2.9  3  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
       0.42    6.0  14.8      0.079    8.4   0.1    4.1  5  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        4.6    2.6  10.1      0.073    8.6   1.7    1.9  1  TIGR02680 TIGR02680: TIGR02680 family protein


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  275.4   0.0   3.4e-84     2e-82      18     510 ..      85     602 ..      74     634 .. 0.86

  Alignments for each domain:
  == domain 1    score: 275.4 bits;  conditional E-value: 3.4e-84
    TIGR03719  18 keilkdislsffpgakiGvlGlnGaGkstllkimaGvdkefeGealaaegikvGyleqePkldeektvrenveegvaeikealdrfeeisaklaeedadfdklleeqaklqekidaadawdldskleiamdalrlpeedak..veklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykg.nysswleqkekrleqeekeeaarkkalkkeleWvrs.spkarqaks.karlaryeelase........esekkeetaeivippger.lGdkvievenlskafg..dklliddlsfklpkggivGviGpnGaGkstlfklitgk..ekpdsGelkiGetvklayvdqs.rdalddnktvweeisdGldllklgkvev...nsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefa...Gcavvishdrwfldria.thi 510
                    +lk+i+ s  p  + G++G+nGaGkstll  ++G  +  eG+al++++++vGyl+q     ++ktv e+ ++ +a+i+ea   +e+ ++k+ e+ +  +  l++ a  qe+ ++ ++++ ++ ++ +++ l   +ed++   +++sGG + r+al+rlll+kP lllldeP nhld+ + +Wl k++++y+G+vv+v hd  +ld  ++ i e+   + + y++  y ++le+ke r ++ + e +++  + ++ + +v +  + a +aks ++r++  e++++e        +   +e++ e+v+p+ ++  G+ ++ +++ + +++  +  l++++++k+p+g  + + GpnGaGkstl+k + g+  e  +sGe    + + l+   q   ++ld++    + ++d +   + g+++v    +r  +gr+++ G+   +kv++lsGGe+ rv l +   + +n+l+ldeP+n ldv  ++ l +al  +    G++vvishdr f +++  th+
  MMETSP1061-20121228|21080_1  85 SPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSNVRVGYLRQSAVSGSTKTVAEEARSEMAHIEEAKLDLEA-KTKIVEDGDYSEDALNDLAAAQEHFETIGGYQQEQLVDSVLKGLGFEPEDSDrlCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANYDGSVVLVSHDVSLLDAGVNSIAEIVGNTIVEYRScSYNKYLEEKEFRAASAQAEYERNLEEAARLQAFVDKfGASATKAKSaQSRVKMLEKMKREgkldpppvAVVARERDPELVLPTPPKpNGEYLMTLNDATIGYDpnEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNvpEMIQSGERIENDRLFLGTFTQDlAQELDPEARAVDLVTDYARSGSDGDIRVtdeAARGVLGRLGLGGEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGgkdGAVVVISHDRKFCEKVGfTHV 602
                  5689****************************************************************************99999877.556666655567778899999************************98887653389************************************************************************999****8648***********9998888777777778888888543778888887468999999998772222222234578889999999887747999********999733668*********************************984467899998889999998877752789****9999999986666655555552226899**************************************************************997333689************964787 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.2   2.8e-24   1.6e-22     290     520 ..      10     289 ..       6     297 .. 0.69
   2 !   29.7   0.0   1.1e-09   6.6e-08     320     373 ..     387     455 ..     338     474 .. 0.74
   3 !   33.3   0.0   9.1e-11   5.4e-09     456     522 ..     529     596 ..     501     601 .. 0.88

  Alignments for each domain:
  == domain 1    score: 77.9 bits;  conditional E-value: 2.8e-24
    TIGR02857 290 gvaaaealvevldaeeqpeaekapltaaass...............................slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv..............ngaelaeldadswrkqiawvpQkPl.lfegt.vaenirlarkd....aseaevkealeragldelvkalpqgleteiGer...gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlala 520
                  gvaaa + + v+ +++ ++ +k+++++  +s                               +l+lenv ++ +g++p lke++ +v+p+e+ ++vG  GaGKstll ++ g+v+ +eG+ lv               g+  +++ a++ r+++a++  + l l ++t + e+   ++      a+++e  e +   + ++lv+++ +gl  e  ++    +  SgG + R+aLAr+ll++ +llllDEP  hLD++++  + + ++++    +v+lv+H+ +l+
  MMETSP1061-20121228|21080_1  10 GVAAATQAFVVVPKHNYEHRSKSSVAESTAStnrlfsstkavveggataepygtivgdtrgaTLRLENVAIS-RGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVhsnvrvgylrqsavSGS--TKTVAEEARSEMAHIEEAKLdLEAKTkIVEDGDYSEDAlndlAAAQEHFETIGGYQQEQLVDSVLKGLGFEPEDSdrlCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANY--DGSVVLVSHDVSLL 289
                  556666666665544444444444444333345566666666666666666666677777779*****9876.78889*********************************************98888888876665333..2333345577777776654312222224444443333210012222233444445566777777778776654431126789******************************************994..5679999**98765 PP

  == domain 2    score: 29.7 bits;  conditional E-value: 1.1e-09
    TIGR02857 320 s..............slelenvsvay.egrkpalkevsltvepgelvalvGaSGaGKstllklllgfve 373
                                  ++l++ ++ y +++ p l++++l+++ g ++ l G+ GaGKstllk+l g v+
  MMETSP1061-20121228|21080_1 387 PelvlptppkpngeyLMTLNDATIGYdPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVP 455
                  0444555555555667899999999977777*********************************99885 PP

  == domain 3    score: 33.3 bits;  conditional E-value: 9.1e-11
    TIGR02857 456 gagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrlalael 522
                   + LSgG++ R+aL    l+ ++ll+lDEP  hLD      + +al     +  +v++++H+++  e+
  MMETSP1061-20121228|21080_1 529 VKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGgKDGAVVVISHDRKFCEK 596
                  578*********************************************9878889*******998876 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.5   3.4e-11     2e-09     296     418 ..      33     156 ..       4     169 .. 0.84
   2 !   39.2   0.0   1.2e-12   7.3e-11     470     529 ..     228     285 ..     203     286 .. 0.87
   3 !   33.2   0.0   7.9e-11   4.7e-09     297     386 ..     351     455 ..     339     466 .. 0.79
   4 !   31.8   0.0   2.2e-10   1.3e-08     470     529 ..     530     590 ..     517     591 .. 0.93

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 3.4e-11
    TIGR02868 296 qltrvraaaeRieevldakvevaeasapaaeaaas.ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtld.gvsvaslsesevrrvvsvlaqda 418
                  ++ ++ a+ +R+   ++a ve +++++p    +++   +tl+l+++++s+  + + lk+++  ++p er  +vG  GaGKstLl +++g +  ++G+ ++  +v v  l++s+v+     +a++a
  MMETSP1061-20121228|21080_1  33 SVAESTASTNRLFSSTKAVVEGGATAEPYGTIVGDtRGATLRLENVAISRGAS-PLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHsNVRVGYLRQSAVSGSTKTVAEEA 156
                  55677889999999999999999999998887777789**********98776.66****************************************99886258888999999999888888876 PP

  == domain 2    score: 39.2 bits;  conditional E-value: 1.2e-12
    TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                  + +SGG + R+alAR Ll++  +llLDEP+ hLD  +++ l + +++ +    vvlv+h+
  MMETSP1061-20121228|21080_1 228 SDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANYD--GSVVLVSHD 285
                  569********************************99988877775443..457888886 PP

  == domain 3    score: 33.2 bits;  conditional E-value: 7.9e-11
    TIGR02868 297 ltrvraaaeRieevldak.......vevaeasapaaeaaas.......ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglld 386
                   t++++a +R++ +++ k       ++va ++ +++ +++        ++  ++l+d +++y+ +e+  l++++l+++ G ++ + G+ GaGKstLl++l g ++
  MMETSP1061-20121228|21080_1 351 ATKAKSAQSRVKMLEKMKregkldpPPVAVVARERDPELVLptppkpnGEYLMTLNDATIGYDPNEApLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVP 455
                  455666666666555555556666566666666666666556777777888899**********9999********************************99765 PP

  == domain 4    score: 31.8 bits;  conditional E-value: 2.2e-10
    TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl.aaeegrtvvlvthr 529
                  ++lSGGe+ R+al    l+  ++l+LDEP+ hLD++  + l ++L   + ++ +vv+++h+
  MMETSP1061-20121228|21080_1 530 KALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSgWGGKDGAVVVISHD 590
                  79*******************************************9877888889****97 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1   3.2e-20   1.9e-18       2     199 ..      73     288 ..      72     305 .. 0.67
   2 !   53.4   0.0   7.5e-17   4.5e-15       7     201 ..     410     595 ..     404     611 .. 0.83

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 3.2e-20
    TIGR03873   2 lrlsrvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagad.............lkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsded................aevvdralarvels.sladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnl 199
                  lrl++v++++g+ +++++++ ++ + +  g++G nG+Gkstll  ++G ++ d+G+  + ++               k+++  ar+ ++a +        + +  d  a  +i   + ++ d+ +d                +++vd +l   + + + +dr +s +sGG + r+ lar l  +P+lllldeP nhld sa+  l + + +       vv+  hd++l
  MMETSP1061-20121228|21080_1  73 LRLENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSNVrvgylrqsavsgsTKTVAEEARS-EMAHI--------EEAKLDLEAKTKIVEDGDYSEDALNDlaaaqehfetiggyqqEQLVDSVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANY---DGSVVLVSHDVSL 288
                  89*****************************************************9866544333333333333222223222332.23333........33334444445555555555555555000000000000000044555555555554234789999************************************98777777777...4455566688876 PP

  == domain 2    score: 53.4 bits;  conditional E-value: 7.5e-17
    TIGR03873   7 vsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarvels.sladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaa 201
                  +++  ++ +++++++++ P G    l GPnG+Gkstll+ l G +     e+  +g+ ++        + + +  qd  +e++  +r v  l     rs   +d    +e+++ +l+r +l  +   r++++lsGGe+ rv l     +  +ll+ldeP nhldv    +l ++++   ++  +vvv  hd ++  
  MMETSP1061-20121228|21080_1 410 IGYDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVP----EMIQSGERIEN-----DRLFLGTFTQDLAQELDPEARAV-DLVTDYARSGSDGDIRVTDEAARGVLGRLGLGgEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDRKFCE 595
                  55666778899****************************9999775....34555665543.....23568999999999999999865.55555679999999999999**********9635678****************99888999***************************999999999999976544 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   2.3e-09   1.4e-07       1      61 [.      73     133 ..      73     196 .. 0.88
   2 !   37.1   0.0   9.3e-12   5.5e-10      97     186 ..     197     285 ..     183     294 .. 0.82
   3 !   23.3   0.0   1.6e-07   9.3e-06       8      50 ..     412     454 ..     405     470 .. 0.87
   4 !   31.1   0.0   6.1e-10   3.6e-08     112     187 ..     515     591 ..     502     598 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.3e-09
    TIGR01189   1 LeaeelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelnd 61 
                  L  e++a++Rg+  ll++++ ++++ e   ++G nG+GK+tLL  ++G ++ ++G+  +++
  MMETSP1061-20121228|21080_1  73 LRLENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHS 133
                  56799**************************************************987763 PP

  == domain 2    score: 37.1 bits;  conditional E-value: 9.3e-12
    TIGR01189  97 yaallqseqk.tveealekvgLs.gledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathq 186
                  ++++ +++q+  v+  l+ +g + + +d++++  s G + R+alarLllsk  l +LDEP   lD ++ + l + +a++   +G+v+l +h 
  MMETSP1061-20121228|21080_1 197 FETIGGYQQEqLVDSVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANY---DGSVVLVSHD 285
                  55555555543667778888887356899*********************************************99864...7888888875 PP

  == domain 3    score: 23.3 bits;  conditional E-value: 1.6e-07
    TIGR01189   8 veRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLl 50 
                  +  +e  ll+++++++  G  l ++GpnG+GK+tLL+ l G +
  MMETSP1061-20121228|21080_1 412 YDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNV 454
                  5568899*******************************99965 PP

  == domain 4    score: 31.1 bits;  conditional E-value: 6.1e-10
    TIGR01189 112 lekvgLsgled.lpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqd 187
                  l ++gL g +  + v++Ls G k R+al+   l++  l +LDEP   lD+  ++ la++l+    ++G+v++ +h  
  MMETSP1061-20121228|21080_1 515 LGRLGLGGEKPlRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDR 591
                  5666666655415799*********************************************************9975 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   2.2e-09   1.3e-07       3      60 ..      75     132 ..      73     141 .. 0.88
   2 !   34.6   0.0   5.6e-11   3.4e-09     101     205 ..     205     308 ..     182     322 .. 0.76
   3 !   54.0   0.0   6.3e-17   3.7e-15      15     216 ..     419     624 ..     409     631 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 2.2e-09
    TIGR03740   3 tknlskkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilld 60 
                   +n++ + +   ++++++ +v+ ++ +g++G+nGaGkstll  +tG +r ++G+ l++
  MMETSP1061-20121228|21080_1  75 LENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVH 132
                  56666777778899***************************************98875 PP

  == domain 2    score: 34.6 bits;  conditional E-value: 5.6e-11
    TIGR03740 101 pesrieevlkivdlent.ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiG.iiseGklkye 205
                  +e+ +++vlk +++e + + + +++fs G + r+ +a  ll kP ll+ldeP+n ld    + l + i  +     +v+l sh +s ++  ++ i  i+ +  ++y+
  MMETSP1061-20121228|21080_1 205 QEQLVDSVLKGLGFEPEdSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANYDG---SVVLVSHDVSLLDAGVNSIAeIVGNTIVEYR 308
                  56779999999999865156789********************************************998864...5777788777666655555413333344443 PP

  == domain 3    score: 54.0 bits;  conditional E-value: 6.3e-17
    TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllklltGllrk..tsGeilldgrewtrkdlkkiGsliesPalyenltarenlkvrtlllglpesrieevlkivdlente.kkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevella.dhiGiiseGklkyekkidkdedlee 216
                  +++n++lk+++     l GpnGaGkstllk l G + +  +sGe + ++r +     +++   ++  a   +l +            + ++    vl  ++l  ++  +k+k +s G k r+ + +  l+  +ll+ldeP+n ld   i  l + +  +  k  +v++ sh     e++   h+G + +Gkl +e++  +d d ++
  MMETSP1061-20121228|21080_1 419 LLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVPEmiQSGERIENDRLFLGTFTQDLAQELDPEARAVDLVTDYARSGSDGDIRVTDEAARGVLGRLGLGGEKpLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDRKFCEKVGfTHVGTVMDGKLLLEQRSLRDSDWDQ 624
                  689*******************************99753379999999999999999999999998888888887777777777788999999*********8665279**************************************************98888888888888887777438**************9988888765 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   1.3e-08   7.9e-07       7      62 ..      87     143 ..      82     155 .. 0.85
   2 !   31.7   0.0   3.5e-10   2.1e-08     105     189 ..     206     288 ..     182     289 .. 0.86
   3 !   56.3   0.2     1e-17     6e-16       3     186 ..     415     590 ..     413     594 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 1.3e-08
    TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGe.eldysrkg 62 
                   lk++n +v+  e+ +++G nGaGkstll  ++G++r  +Gk l++ +  + y r++
  MMETSP1061-20121228|21080_1  87 LLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSNvRVGYLRQS 143
                  799**************************************9877654267777665 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 3.5e-10
    TIGR01166 105 errvrealaavdis.gleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthdvdl 189
                  e+ v+  l+ ++ + +  +r+++ +sgG + r+a+a  +  +p +llldeP+  ld++ ++ l + + +   +G +vv+ +hdv l
  MMETSP1061-20121228|21080_1 206 EQLVDSVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANY--DG-SVVLVSHDVSL 288
                  46677788888876345789*******************************************9998865..34.688899***98 PP

  == domain 3    score: 56.3 bits;  conditional E-value: 1e-17
    TIGR01166   3 deaevlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaeverrvrealaavdisgle.erpthllsgGekkrvaiagavalrp.dvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                  +ea  l+++nl++ rg +l l G+nGaGkstll+ l G +     +++  Ge ++ +r  l +  + +a   q+ d    a d+  d a +  +  ++    ++  r  l  +++ g +  r ++ lsgGek rva+ g+ al++ ++l+ldeP+  ld    + l+++l++   +   vv+ +hd
  MMETSP1061-20121228|21080_1 415 NEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNV----PEMIQSGERIENDRLFLGTFTQDLA---QELDPEARAVDLVTDYARSGSDGDIR--VTDEAARGVLGRLGLGGEKpLRKVKALSGGEKARVAL-GMFALKAsNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHD 590
                  67789*****************************999976....47899*********99999988765...77777777889999988765543222..2234445567777776654248899***********8.677777626889***********************9988888888999 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   7.1e-06   0.00042       1      60 [.      75     134 ..      75     174 .. 0.90
   2 !   39.6   0.0   1.3e-12   7.9e-11     110     198 ..     204     290 ..     190     298 .. 0.86
   3 !   16.3   0.0   1.9e-05    0.0011      11      44 ..     417     450 ..     408     476 .. 0.84
   4 !   36.1   0.0   1.6e-11   9.3e-10     113     199 ..     509     596 ..     495     600 .. 0.91

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 7.1e-06
    TIGR03608   1 lkniskkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegk 60 
                  l+n+  + +   +lk+++ +++  e   ivG  G+GKstlL  ++   ++d+gk +++ +
  MMETSP1061-20121228|21080_1  75 LENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSN 134
                  678888899999*********************************999999999887655 PP

  == domain 2    score: 39.6 bits;  conditional E-value: 1.3e-12
    TIGR03608 110 ekekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevae 198
                  ++e+++ +vl+ +g+  ++ ++   ++sgG + R+alar+ll +++l+l DEP   LD+  ++ + +++ +    +  +++v Hd ++ +
  MMETSP1061-20121228|21080_1 204 QQEQLVDSVLKGLGFePEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANY---DGSVVLVSHDVSLLD 290
                  6778889999*****6677888899**************************************999887654...556889999998765 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 1.9e-05
    TIGR03608  11 keilkklslkiekGelvaivGesGsGKstlLnil 44 
                    +l++++lki +G+ + + G  G+GKstlL  l
  MMETSP1061-20121228|21080_1 417 APLLQNINLKIPRGMKLLLRGPNGAGKSTLLKAL 450
                  5689***************************877 PP

  == domain 4    score: 36.1 bits;  conditional E-value: 1.6e-11
    TIGR03608 113 kkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek 199
                  ++   vl ++gl  +k  +k+  lsgGek Rval    lk s+l++ DEP   LD    + + + l+    ++  ++++ Hd +  ek
  MMETSP1061-20121228|21080_1 509 EAARGVLGRLGLgGEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDRKFCEK 596
                  5666788899997778889***************************************************************988776 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   4.2e-08   2.5e-06     479     527 ..      84     132 ..      66     167 .. 0.85
   2 !   36.0   0.0   8.9e-12   5.3e-10     603     666 ..     229     290 ..     206     304 .. 0.91
   3 !   22.8   0.0   8.7e-08   5.2e-06     466     516 ..     403     453 ..     381     462 .. 0.87
   4 !   26.8   0.0   5.6e-09   3.3e-07     602     666 ..     530     595 ..     465     613 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 4.2e-08
    TIGR03375 479 ekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlld 527
                   ++ Lk+++ +++p e+ +i+G +G+GKstll  ++g ++ +eG+ l+ 
  MMETSP1061-20121228|21080_1  84 ASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVH 132
                  56789***************************************98774 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 8.9e-12
    TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe 666
                   +SgG +  +alaR+ll++p++llLDEP+++lD+s+ + l + ++++  d  +vlv+H  slL+
  MMETSP1061-20121228|21080_1 229 DFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANY--DGSVVLVSHDVSLLD 290
                  68********************************9999998888775..7789*********97 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 8.7e-08
    TIGR03375 466 ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllgl 516
                  + l++ +  Y  +e + L+n++lki  G k+ + G +G+GKstllk l g 
  MMETSP1061-20121228|21080_1 403 MTLNDATIGYDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGN 453
                  46889999**************************************99875 PP

  == domain 4    score: 26.8 bits;  conditional E-value: 5.6e-09
    TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrtslLe 666
                  ++LSgG +  val    lk  ++l+LDEP+++lD    + l ++L+ +   d  +v+++H  ++ e
  MMETSP1061-20121228|21080_1 530 KALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGkDGAVVVISHDRKFCE 595
                  68**********************************************9878999*****877655 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.2   0.0   5.6e-14   3.3e-12       1     240 [.      73     321 ..      73     324 .. 0.70
   2 !   30.0   0.0   1.2e-09   7.3e-08      11      59 ..     415     463 ..     405     481 .. 0.88
   3 !   33.7   0.0   8.9e-11   5.3e-09     144     225 ..     531     612 ..     522     618 .. 0.94

  Alignments for each domain:
  == domain 1    score: 44.2 bits;  conditional E-value: 5.6e-14
    TIGR01978   1 LkikdlhvsvedkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkg.qdlleleveeraraGlflafqapeeipG..............vsnkeflrsalnavrkarge.eeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdvelakelekkgy 240
                  L+++++ +s    ++Lk++n +v++ e   i+G nG+GkstL  +++g  ++   +G+  ++    +  l+    +     +a  a +e++               v+  ++  +aln   +a+++ e++   + e+l+++ l+ l ++ e ++R l + fsGG + r  + +l+l +P+l +LDe    lD  a   + + + ++   + ++++++h   ll++   + +  ++  +iv+  + +  k le+k +
  MMETSP1061-20121228|21080_1  73 LRLENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRM--DEGKALVHSnVRVGYLRQSAVSGSTKTVAEEARSEMAHieeakldleaktkiVEDGDYSEDALNDLAAAQEHfETIGGYQQEQLVDSVLKGLGFEPEDSDR-LCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANY---DGSVVLVSHDVSLLDAGV-NSIAEIVGNTIVEYRSCSYNKYLEEKEF 321
                  678999999999***********************************97543..44444333202333444444444444444444444444000000000011115555666666666554443324567777778888999999999999988.5678********************************99998888887766...789**********99854.5555566678888888888888888776 PP

  == domain 2    score: 30.0 bits;  conditional E-value: 1.2e-09
    TIGR01978  11 edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGei 59 
                  ++ ++L+++nl++ +G    + GpnG+GkstL k+l g+    ++sGe 
  MMETSP1061-20121228|21080_1 415 NEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVPEMIQSGER 463
                  67899***********************************999999974 PP

  == domain 3    score: 33.7 bits;  conditional E-value: 8.9e-11
    TIGR01978 144 GfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivk 225
                    sGGek r  +  +al   +l +LDe    lDv  +  +a+ ++ +  ++ a+++i+h +++ e++  ++v  ++dG+++ 
  MMETSP1061-20121228|21080_1 531 ALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDRKFCEKVGFTHVGTVMDGKLLL 612
                  58*********999999999**********************************************************9875 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   3.3e-11   1.9e-09       2      64 ..      72     134 ..      71     152 .. 0.91
   2 !   21.6   0.0   5.1e-07     3e-05     119     207 ..     204     291 ..     187     306 .. 0.85
   3 !   18.0   0.0   6.3e-06   0.00037       4      52 ..     404     454 ..     401     479 .. 0.84
   4 !   30.8   0.0   8.2e-10   4.9e-08     138     223 ..     526     613 ..     505     624 .. 0.86

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 3.3e-11
    TIGR03411   2 iLevedvsvsfdgfkalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk 64 
                  +L++e+v +s ++   l++++ sv+++e   i+G nGaGk+tll +itG +r deG++l++++
  MMETSP1061-20121228|21080_1  72 TLRLENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSN 134
                  68999****************************************************998875 PP

  == domain 2    score: 21.6 bits;  conditional E-value: 5.1e-07
    TIGR03411 119 eekerieevleligLeek.adkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvre 207
                  ++++ +++vl+ +g e +  d+  +  s G + ++ ++ ll+ +p+llllDeP   + ++ ++  ++ + +   + svv+v hD++ +++
  MMETSP1061-20121228|21080_1 204 QQEQLVDSVLKGLGFEPEdSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANY--DGSVVLVSHDVSLLDA 291
                  567788999999999865268999******************************************999876..5689******998764 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 6.3e-06
    TIGR03411   4 evedvsvsfdgfka..lndlslsveegelrviiGpnGaGkttllDvitGkt 52 
                  +++d ++ +d  +a  l++++l++ +g   ++ GpnGaGk+tll ++ G +
  MMETSP1061-20121228|21080_1 404 TLNDATIGYDPNEAplLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNV 454
                  566777777777666699********9999999**************9988 PP

  == domain 4    score: 30.8 bits;  conditional E-value: 8.2e-10
    TIGR03411 138 dkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkela.kersvvvvehDmefvrela.ekvtvlheGkvlae 223
                   +k  +Ls G+k ++ +gm+ ++ ++ll+lDeP   +     +  a+ l+    k+ +vvv+ hD +f +++  ++v  + +Gk+l e
  MMETSP1061-20121228|21080_1 526 LRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGgKDGAVVVISHDRKFCEKVGfTHVGTVMDGKLLLE 613
                  467789***********************************99999999988625679**************9789999999999876 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   8.3e-06   0.00049       5      64 ..      76     134 ..      72     151 .. 0.83
   2 !   37.1   0.0     9e-12   5.4e-10     114     202 ..     205     291 ..     188     300 .. 0.84
   3 !   22.8   0.0   2.3e-07   1.4e-05       5      50 ..     406     452 ..     402     468 .. 0.83
   4 !   26.5   0.0   1.6e-08   9.8e-07     121     204 ..     514     598 ..     502     609 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 8.3e-06
    TIGR02673   5 ekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevage 64 
                  e+v  +  ++   Lk+++ ++++ e   ++G  GaGk+tll  ++g+ + ++G+  v+ +
  MMETSP1061-20121228|21080_1  76 ENVAISR-GASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSN 134
                  5555554.566789***************************************9988754 PP

  == domain 2    score: 37.1 bits;  conditional E-value: 9e-12
    TIGR02673 114 iqkrveevlelvgledk.akalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelver 202
                   ++ v++vl+ +g+e    + l + +sgG q R+a+aR +++kP+lll DeP   lD++ +  + + +    ++  +v++++hd +l+++
  MMETSP1061-20121228|21080_1 205 QEQLVDSVLKGLGFEPEdSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYI---ANYDGSVVLVSHDVSLLDA 291
                  5677999******9965268899**********************************99988766554...44555788899****9986 PP

  == domain 3    score: 22.8 bits;  conditional E-value: 2.3e-07
    TIGR02673   5 ekvskeya.agveaLkdvslkiekgeflfltGasGaGkttllklllg 50 
                  ++ +  y  +++  L++++lki +g  l l G+ GaGk+tllk l g
  MMETSP1061-20121228|21080_1 406 NDATIGYDpNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRG 452
                  55566676467889*****************************9876 PP

  == domain 4    score: 26.5 bits;  conditional E-value: 1.6e-08
    TIGR02673 121 vlelvgle.dkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervk 204
                  vl  +gl  +k   + ++lsgGe+ Rva+    ++  +ll+ DeP   lD    + + + l+    +  +v+v +hd++++e+v 
  MMETSP1061-20121228|21080_1 514 VLGRLGLGgEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDRKFCEKVG 598
                  666677752566778899**********************************************999999*********999874 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.8e-06   0.00017      13      73 ..      82     143 ..      72     152 .. 0.81
   2 !   33.4   0.0   1.3e-10   7.9e-09     115     203 ..     205     291 ..     192     300 .. 0.80
   3 !   45.5   0.0   2.7e-14   1.6e-12       2     205 ..     403     598 ..     402     610 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.8e-06
    TIGR00960  13 gaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirv.sgqdltklrdr 73 
                   +a + l++++ +++  e   +vG  GaGkstll  i+g+ +  +Gk +v s+  ++ lr+ 
  MMETSP1061-20121228|21080_1  82 RGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVhSNVRVGYLRQS 143
                  456778****************************************9887244566666665 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 1.3e-10
    TIGR00960 115 ieervsaalekvGlkdk.akalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlves 203
                   e+ v  +l+ +G++     +l  ++sgG q r+a+ar +++kP+lll deP+  ld+  ++d l   + + +    v++ +hd +l++ 
  MMETSP1061-20121228|21080_1 205 QEQLVDSVLKGLGFEPEdSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSS-AKDWLG--KYIANYDGSVVLVSHDVSLLDA 291
                  567788899999998651567999********************************986.566654..4455555567777899999876 PP

  == domain 3    score: 45.5 bits;  conditional E-value: 2.7e-14
    TIGR00960   2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivfqdfk..llsdrtvydnvalalriiGvkg..reieervsaalekvGlkd.kakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskr 205
                  +++++ +  y   + + l+n+++ki++G    l G+ GaGkstllk + g       ++          +++++   r  +G+  qd    l  +  ++d v       G  g  r ++e ++ +l ++Gl + k  +  + lsgGe+ rva+    ++  +ll+ deP+  ld     ++ + l     +  +v+v +hd+++ e+ +
  MMETSP1061-20121228|21080_1 403 MTLNDATIGYDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGN----VPEMIQ--------SGERIENDRLFLGTFTQDLAqeLDPEARAVDLVT-DYARSGSDGdiRVTDEAARGVLGRLGLGGeKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDRKFCEKVG 598
                  567888999999*********************************976442....233333........455666678899******7511444555566554.55556776622467899999*******86266788899**********************************************9999999********999876 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0     2e-18   1.2e-16       3     208 ..      74     288 ..      72     313 .. 0.72
   2 !   21.0   0.0   6.7e-07     4e-05      12      50 ..     414     452 ..     402     476 .. 0.82
   3 !   22.7   0.0   2.1e-07   1.2e-05     124     205 ..     509     590 ..     505     622 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 2e-18
    TIGR02315   3 evenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlveissg........si.llegkevtklkkkelrklrkkigmifq.eynlierltvlen..vLsgrlgakstlksllglfseedk.ekAlelLervglaelaakr.adqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdl 208
                  ++en++ + + ++  lk++n ++++ e  +++G  GaGkstll +i + v++++g        ++ +l+++ v+   k   +++r++++ i   +++l ++++++e+      +l+   + ++ +++    ++ +   ++L+ +g++   + r +++ sGG q R+a+aR l+ +p+l+l DEP   LD ++   +    k i++ +g  v+v+ H+v+l
  MMETSP1061-20121228|21080_1  74 RLENVAISRG-ASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGkalvhsnvRVgYLRQSAVSGSTKTVAEEARSEMAHIEEaKLDLEAKTKIVEDgdYSEDALNDLAAAQEHFETIGGYQQeQLVDSVLKGLGFEPEDSDRlCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLG---KYIANYDGSVVLVS-HDVSL 288
                  5666666655.6778***************************************96555554422123344444445556677888888887524666666666664223445566666666666666554440456679******9888777599*********************************87665443...44566666655554.66665 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 6.7e-07
    TIGR02315  12 pngkqalknvnleikkGelvaviGlsGaGkstllrsinr 50 
                  pn+   l+n+nl+i +G  + + G+ GaGkstll+++ +
  MMETSP1061-20121228|21080_1 414 PNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRG 452
                  4667789****************************9965 PP

  == domain 3    score: 22.7 bits;  conditional E-value: 2.1e-07
    TIGR02315 124 ekAlelLervgla.elaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHq 205
                  e A  +L r+gl  e+  +++++LsGG++ Rva+    ++ ++l++ DEP   LD    + + ++l     ++g  v+++ H+
  MMETSP1061-20121228|21080_1 509 EAARGVLGRLGLGgEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVIS-HD 590
                  56777899999972566789****************99*****************9999999999999999999888876.54 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.2e-08   1.9e-06       2      60 ..      73     131 ..      72     144 .. 0.92
   2 !   32.0   0.0   2.9e-10   1.7e-08     104     176 ..     200     273 ..     190     290 .. 0.88
   3 !   21.5   0.0   4.7e-07   2.8e-05      14      48 ..     417     451 ..     404     463 .. 0.85
   4 !   21.8   0.0   3.8e-07   2.3e-05     112     172 ..     510     571 ..     498     588 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 3.2e-08
    TIGR03864   2 leveglsfaygkrralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikv 60 
                  l +e+++ + g++  l++++ +v++ e   ++G nGaGkstL+  +t+ ++ +eg+  v
  MMETSP1061-20121228|21080_1  73 LRLENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALV 131
                  6788999999*******************************************998765 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 2.9e-10
    TIGR03864 104 lsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevr 176
                  ++  + e+ ++++l+ lg++  ++++   + +GG + r+ +ar ll +P+lLLlDe++  LD ++++ l +++ 
  MMETSP1061-20121228|21080_1 200 IGGYQQEQLVDSVLKGLGFEPEDSDRlCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIA 273
                  6667778889999******99999985689***********************************999988875 PP

  == domain 3    score: 21.5 bits;  conditional E-value: 4.7e-07
    TIGR03864  14 rralddvsltvakgefvaLLGpnGaGkstLfsllt 48 
                     l++++l++++g    L GpnGaGkstL++ l 
  MMETSP1061-20121228|21080_1 417 APLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALR 451
                  55699*********999999**********99876 PP

  == domain 4    score: 21.8 bits;  conditional E-value: 3.8e-07
    TIGR03864 112 rieealarlgla.eraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalv 172
                    + +l rlgl  e+   kv++L+GG++ rv +    l + +lL+lDe++  LD+   + l 
  MMETSP1061-20121228|21080_1 510 AARGVLGRLGLGgEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLA 571
                  5566788999963677899***********************************98766555 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.1   4.1e-07   2.4e-05     316     374 ..      72     128 ..      66     135 .. 0.88
   2 !   32.0   0.0   1.8e-10   1.1e-08     454     522 ..     229     295 ..     220     307 .. 0.88
   3 !   23.1   0.0   8.4e-08     5e-06     311     370 ..     395     456 ..     380     482 .. 0.82
   4 !   24.0   0.0   4.6e-08   2.7e-06     453     520 ..     530     597 ..     510     611 .. 0.91

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 4.1e-07
    TIGR01842 316 elevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGs 374
                  +l++env +   +++ + lk+i+ ++++ e  +i+G  g+Gks+L   ++G + + +G+
  MMETSP1061-20121228|21080_1  72 TLRLENVAIS--RGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGK 128
                  6788888776..46678************************************999997 PP

  == domain 2    score: 32.0 bits;  conditional E-value: 1.8e-10
    TIGR01842 454 aLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllel.vdk 522
                    sgG + RiaLaR l  +P l++LDeP   LD++    l k + +      +vv+++h +sll++ v+ 
  MMETSP1061-20121228|21080_1 229 DFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIAN---YDGSVVLVSHDVSLLDAgVNS 295
                  68**************************************998876...5789*********99753555 PP

  == domain 3    score: 23.1 bits;  conditional E-value: 8.4e-08
    TIGR01842 311 Pepege..levenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlp 370
                  P+p+ge  +++++ ++    ++++ l++i++++  G  l + Gp g+Gks+L + l G +++
  MMETSP1061-20121228|21080_1 395 PKPNGEylMTLNDATIGYDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVPE 456
                  34444433899999999999999*********************************998765 PP

  == domain 4    score: 24.0 bits;  conditional E-value: 4.6e-08
    TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv 520
                  +aLsgG + R+aL      +  l++LDeP   LD      lakal     +  +vvvi+h  +  e v
  MMETSP1061-20121228|21080_1 530 KALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDRKFCEKV 597
                  68************9999******************************************88776665 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   8.7e-07   5.2e-05       9      53 ..      88     132 ..      83     139 .. 0.94
   2 !   37.9   0.0   4.4e-12   2.6e-10     105     261 ..     209     364 ..     187     385 .. 0.79
   3 !   18.3   0.0   4.1e-06   0.00024       8      40 ..     419     451 ..     412     457 .. 0.88
   4 !   22.1   0.0   2.9e-07   1.7e-05     108     198 ..     514     606 ..     503     620 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 8.7e-07
    TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarva 53 
                  ++++n +v+  e +g++G nGAGK+t++  +t+ ++ d+G+a v 
  MMETSP1061-20121228|21080_1  88 LKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVH 132
                  6899**************************************995 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 4.4e-12
    TIGR01188 105 aeellelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkkevsllaaeltesll.eleavevdsdkvklk 261
                  ++ +l+ + +  e +d+    +sgG + r+ la+ l+++P++l LDEP   LD+ +++ + ++i++    + +++l +h++   d+  + +a i   +i+   +    K   +ke+     ++  e + e+++  + + ++   ++++++ ++ +vk+ 
  MMETSP1061-20121228|21080_1 209 VDSVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANY---DGSVVLVSHDVSLLDAGVNSIAEIVGNTIVEYRSCSYNKYLEEKEFRAASAQAEYERNLEEAARLQAFVDKFGaSATKAKSAQSRVKML 364
                  5556666666436689999*********************************************876...5679999*********99*9999999999999999988877777777767777777776666666666665533555555555555554 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 4.1e-06
    TIGR01188   8 AvdgvnlkveegevfglLGPnGAGKtttikmLt 40 
                   ++++nlk+++g  + l GPnGAGK+t++k L 
  MMETSP1061-20121228|21080_1 419 LLQNINLKIPRGMKLLLRGPNGAGKSTLLKALR 451
                  5899************************99885 PP

  == domain 4    score: 22.1 bits;  conditional E-value: 2.9e-07
    TIGR01188 108 llelvelk.eaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkla.drvaiid 198
                  +l ++ l  e+  +kvk +sgG + r+ l++  ++  ++l LDEP   LD+     + + ++    ++ ++++ +h+ +  +k++  +v+ + 
  MMETSP1061-20121228|21080_1 514 VLGRLGLGgEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDRKFCEKVGfTHVGTVM 606
                  56666664256679*****************************************************99****99997655554323444444 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0     3e-09   1.8e-07       1      60 [.      73     132 ..      73     148 .. 0.93
   2 !   28.8   0.0   2.9e-09   1.7e-07     123     174 ..     221     272 ..     194     306 .. 0.79
   3 !   20.8   0.0   7.9e-07   4.7e-05       4      53 ..     406     457 ..     403     469 .. 0.82
   4 !   16.7   0.0   1.4e-05   0.00083     127     201 ..     527     600 ..     514     629 .. 0.82

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 3e-09
    TIGR03410   1 levenlevaYgesevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeiele 60 
                  l++en+ ++ g+s +l++++ +v+ +e   ++G ng+Gk+tll a++g++++ +G+  ++
  MMETSP1061-20121228|21080_1  73 LRLENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVH 132
                  67899**************************************************97665 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 2.9e-09
    TIGR03410 123 emlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvi 174
                  e  +R   d sGG q  +a+aR L+++P lllLDeP++ +  s  + ++k i
  MMETSP1061-20121228|21080_1 221 EDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYI 272
                  56789999****************************9988777655555554 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 7.9e-07
    TIGR03410   4 enlevaYg..esevlrdvslevekgevvavlGrngvGkttllkalvgllkvk 53 
                  ++ ++ Y+  e+ +l++++l++++g  + + G ng+Gk+tllkal g ++++
  MMETSP1061-20121228|21080_1 406 NDATIGYDpnEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVPEM 457
                  56666665226778*********************************99864 PP

  == domain 4    score: 16.7 bits;  conditional E-value: 1.4e-05
    TIGR03410 127 RrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladr 201
                  R+   LsGG +  +a++   ++  +ll+LDeP++ +    i+ ++k+++    + d a++++ +  +f+ +++ +
  MMETSP1061-20121228|21080_1 527 RKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGK-DGAVVVISHDRKFCEKVGFT 600
                  77889*************999****************************99886.56778888888999988644 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0     8e-06   0.00048      20      64 ..      87     131 ..      80     144 .. 0.89
   2 !   34.2   0.0   6.7e-11     4e-09     124     206 ..     211     290 ..     200     304 .. 0.81
   3 !   13.5   0.0   0.00013     0.008      18      53 ..     417     452 ..     409     467 .. 0.89
   4 !   24.9   0.0   4.5e-08   2.7e-06     118     209 ..     507     598 ..     500     611 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 8e-06
    TIGR02211  20 vlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevll 64 
                  +lk+++ +++  e  +ivG  G+Gkstll  ++g  +  +G+ l+
  MMETSP1061-20121228|21080_1  87 LLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALV 131
                  799**************************9999988888887666 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 6.7e-11
    TIGR02211 124 ellekvgle.krinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelak 206
                  ++l+ +g+e +  ++  s++sGG + r+a+ar l++kP+l+l deP  +ld+++ + +     +   +++ ++++v+hd +l +
  MMETSP1061-20121228|21080_1 211 SVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWL----GKYIANYDGSVVLVSHDVSLLD 290
                  56666666623456779**********************************9877655....5555678899*******99865 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 0.00013
    TIGR02211  18 ievlkgvsleiekgelvaivGssGsGkstllhllgg 53 
                    +l++++l+i +g  + + G  G+Gkstll  l g
  MMETSP1061-20121228|21080_1 417 APLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRG 452
                  5689***************************99976 PP

  == domain 4    score: 24.9 bits;  conditional E-value: 4.5e-08
    TIGR02211 118 akerakellekvgle.krinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkld 209
                  ++e+a  +l ++gl  ++  +k  +lsGGe+ rva+    ++  +l++ deP  +ld    + + + l      k+ a++v++hd+++ +k+ 
  MMETSP1061-20121228|21080_1 507 TDEAARGVLGRLGLGgEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGG-KDGAVVVISHDRKFCEKVG 598
                  567888899999996367778999**************999*****************999999888888765.567999********99974 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0     5e-15     3e-13      20     207 ..      87     291 ..      81     300 .. 0.80
   2 !   16.0   0.0   2.5e-05    0.0015      15      52 ..     414     451 ..     404     472 .. 0.80
   3 !   21.3   0.0   5.8e-07   3.5e-05     119     204 ..     508     593 ..     489     600 .. 0.85

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 5e-15
    TIGR02982  20 vlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgke.........lkgasekelvqvrrkiGyifqahnlleslt...........aeqnvrmalelkeklsakeakakaeelleavgle.erldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildv 207
                  +l++in +++p e   + G  G+Gk tll  i+g  ++ eG+  v ++          ++g +++   + r ++ +i  a   le+ t           a +++  a+e  e++   ++++ ++++l+ +g+e e  d+  +d+sgG + r+a+ar l ++P+l+l deP   ld+++       l k   +   +++lv hd  +ld 
  MMETSP1061-20121228|21080_1  87 LLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSNVrvgylrqsaVSGSTKTVAEEARSEMAHIEEAKLDLEAKTkivedgdysedALNDLAAAQEHFETIGGYQQEQLVDSVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKD----WLGKYIANYDGSVVLVSHDVSLLDA 291
                  6899*****************************9999*****9998887888988889999999999999999999988765555554222222222224455666667777777777888888899999998457999************************************87653....444555555667899****999885 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 2.5e-05
    TIGR02982  15 elrkqvlfdinleiepgeiviltGpsGsGkttlltlig 52 
                   ++  +l++inl+i  g  ++l Gp G+Gk tll  + 
  MMETSP1061-20121228|21080_1 414 PNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALR 451
                  5566789**************************97543 PP

  == domain 3    score: 21.3 bits;  conditional E-value: 5.8e-07
    TIGR02982 119 kakaeelleavgle.erldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnri 204
                   + a+ +l  +gl+ e+  +k + lsgG k rva+     +  +l++ deP   ld      + + l     + g +++++ hd + 
  MMETSP1061-20121228|21080_1 508 DEAARGVLGRLGLGgEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDG-AVVVISHDRKF 593
                  5678899999999736778899**************999999**************9998888888888776655.67788999875 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.9   0.1   0.00083      0.05      17      67 ..      78     128 ..      69     143 .. 0.86
   2 !   39.5   0.0   1.6e-12   9.4e-11     115     234 ..     194     309 ..     185     326 .. 0.89
   3 !   16.5   0.0   1.6e-05   0.00096      23      59 ..     416     452 ..     406     462 .. 0.90
   4 !   17.6   0.0   7.6e-06   0.00045     130     236 ..     511     618 ..     474     635 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00083
    TIGR02769  17 llgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGe 67 
                  +   ++  ++l++++ s++  e  +++G  GaGkstl   + G  +  +G+
  MMETSP1061-20121228|21080_1  78 VAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGK 128
                  5557788999***************************99999988877776 PP

  == domain 2    score: 39.5 bits;  conditional E-value: 1.6e-12
    TIGR02769 115 lrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeik 234
                   +h++++   ++++ +  +l+ +++++e+ d+l +++sGG   ri++ar l  +P l++lde    ld        + l k  ++   ++++++hd++l +   + ++ + +  ive ++
  MMETSP1061-20121228|21080_1 194 QEHFETIGGYQQEQLVDSVLKGLGFEPEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSA----KDWLGKYIANYDGSVVLVSHDVSLLDAGVNSIAEIVGNTIVEYRS 309
                  578999999999***************************************************99998755....5778888899999***********999999999888888888765 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 1.6e-05
    TIGR02769  23 rkavldnvslsleeGetvallGrsGaGkstlarlllG 59 
                   +++l+n++l++ +G+ + l G  GaGkstl + l G
  MMETSP1061-20121228|21080_1 416 EAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRG 452
                  6789***************************998876 PP

  == domain 4    score: 17.6 bits;  conditional E-value: 7.6e-06
    TIGR02769 130 iaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqk..faqrvlvldeGqiveeikva 236
                  +  +l  ++l  e+  ++ + lsGG   r+++        +l++lde    ld+    ++ + l     + G a+++i+hd +  +k  f++   v+d+  ++e+++  
  MMETSP1061-20121228|21080_1 511 ARGVLGRLGLGGEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDG-AVVVISHDRKFCEKvgFTHVGTVMDGKLLLEQRSLR 618
                  5567888999999999999*************975555679*************999999999999888888.7899****9999983345555788877788887654 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   2.9e-05    0.0017      15      59 ..      90     134 ..      78     146 .. 0.88
   2 !   39.7   0.0   1.2e-12   7.2e-11     112     193 ..     209     287 ..     199     300 .. 0.83
   3 !   27.7   0.2   5.4e-09   3.2e-07     126     164 ..     526     564 ..     417     568 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 2.9e-05
    TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldge 59 
                  +++ +++ k++ ++ G  G+Gk++l+ +i+G +r deg+  +  +
  MMETSP1061-20121228|21080_1  90 EINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSN 134
                  5778889999****************************9877655 PP

  == domain 2    score: 39.7 bits;  conditional E-value: 1.2e-12
    TIGR02142 112 eekvielLgiehL.leRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsld 193
                   ++v++ Lg e+   +Rl ++ sGG + R+a++R lLs+P LLl+DeP   LD++ k+ +  y+    a+ +  +++vsH+++
  MMETSP1061-20121228|21080_1 209 VDSVLKGLGFEPEdSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYI----ANYDGSVVLVSHDVS 287
                  56777778888752689****************************************9666665....555666788999875 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 5.4e-09
    TIGR02142 126 eRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDe 164
                   R+++ LsGGek Rva+g   L + +LL++DeP   LD 
  MMETSP1061-20121228|21080_1 526 LRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDV 564
                  4999*****************************999995 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.9e-05    0.0011       4      63 ..      72     131 ..      69     140 .. 0.89
   2 !   36.2   0.0   1.5e-11   8.7e-10     111     178 ..     205     273 ..     198     286 .. 0.84
   3 !   28.7   0.1   2.8e-09   1.7e-07      16     168 ..     416     565 ..     404     592 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.9e-05
    TIGR03265   4 ylsieeiekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaill 63 
                  +l++e++  + +a   lk+i+ sv+  e   ++G  G Gk+tLL +i+G  + d+G+ l+
  MMETSP1061-20121228|21080_1  72 TLRLENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALV 131
                  5778888888899999************************************99998765 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 1.5e-11
    TIGR03265 111 vaerveelLelvgls.gseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelk 178
                  +++ v+++L+ +g++ + +++  + +sGG q r+aLar l  +P+lLLLDeP   LD+  ++ L + + 
  MMETSP1061-20121228|21080_1 205 QEQLVDSVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIA 273
                  56677888888887525678999**********************************999998877665 PP

  == domain 3    score: 28.7 bits;  conditional E-value: 2.8e-09
    TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlppqkrdyGivfqsYa..LfPnltvaeni.ayGLknkklkreevaerveelLelvglsgsee.kyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDak 168
                  +   l++i+l++ +g  + l GP G Gk+tLL+++ G    +  +++++g+ i +    +   G   q  a  L P+    + + +y  +++  + + ++e  + +L  +gl g +  +    lsGG + rvaL+     + +lL+LDeP   LD  
  MMETSP1061-20121228|21080_1 416 EAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRG----NVPEMIQSGERIEND---RLFLGTFTQDLAqeLDPEARAVDLVtDYARSGSDGDIRVTDEAARGVLGRLGLGGEKPlRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVG 565
                  55679******************************98....455677777777553...3344666676655589998766665379999999999999999**********99874245678************9988999********9999975 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   6.7e-06    0.0004      22      70 ..      86     134 ..      80     147 .. 0.91
   2 !   20.9   0.0   7.2e-07   4.3e-05     148     186 ..     228     266 ..     220     284 .. 0.87
   3 !   35.0   0.0   3.5e-11   2.1e-09      21     214 ..     417     596 ..     412     604 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 6.7e-06
    TIGR02324  22 pvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhe 70 
                  p lke++ +v+  e   + G  GaGkstll ++ ++ +++ g+ lv+ +
  MMETSP1061-20121228|21080_1  86 PLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSN 134
                  6799***************************************998765 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 7.2e-07
    TIGR02324 148 atfsGGekqRvniaraliadrPiLLLdePtasLdaanrk 186
                  + fsGG + R+ +ar l+++  +LLLdeP   Ld++ ++
  MMETSP1061-20121228|21080_1 228 SDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKD 266
                  67*****************7778899********98876 PP

  == domain 3    score: 35.0 bits;  conditional E-value: 3.5e-11
    TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsalevvaepllelGve..reearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrel 214
                   p l++++l++  G  + l G+ GaGkstllk+l +n  pe    +++ +ge +     ++r  l    ++    +q L   P   a+++v++ +++ G++     + ++a+ +l rl +            sGGek Rv + +  ++   +L+LdeP   Ld   +    + ++    +  a++ i hd++  e+
  MMETSP1061-20121228|21080_1 417 APLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNV-PE----MIQ-SGERI----ENDRLFLGTFTQD---LAQEL--DPEARAVDLVTDYARS-GSDgdIRVTDEAARGVLGRLGLGGEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDRKFCEK 596
                  6789******************************8884.55....233.35555....2233333332222...24555..6**********99887.6651145688999*********75555555579*****************9****************999999999999999999999*999887665 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0     3e-05    0.0018       3      57 ..      75     131 ..      73     142 .. 0.79
   2 !   33.4   0.0   1.2e-10     7e-09     105     200 ..     204     297 ..     199     310 .. 0.80
   3 !   13.2   0.0   0.00018     0.011      15      47 ..     421     453 ..     403     473 .. 0.78
   4 !   17.3   0.0     1e-05   0.00062     126     190 ..     529     592 ..     511     616 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3e-05
    TIGR01277   3 lddviyeykhlpl..efdlsveaGervailGesGaGkstllnliaGflepasGeikv 57 
                  l++v       pl  e + sv+  er  i+G  GaGkstll  i+G +   +G+  v
  MMETSP1061-20121228|21080_1  75 LENVAISRGASPLlkEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALV 131
                  66666666555552267889**************************99888887666 PP

  == domain 2    score: 33.4 bits;  conditional E-value: 1.2e-10
    TIGR01277 105 qkekv.edvarqvGia.dylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvv 200
                  q+e++ ++v + +G + +  +rl  ++sGG + r+alar l+ +  +llldep   ld   ++ +     k   + + +++lv+h++s + a ++ ++
  MMETSP1061-20121228|21080_1 204 QQEQLvDSVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWL----GKYIANYDGSVVLVSHDVSLLDAGVNSIA 297
                  555541557788888745689*************************************9998765....4555677999*******998877776665 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 0.00018
    TIGR01277  15 lefdlsveaGervailGesGaGkstllnliaGf 47 
                   + +l++ +G ++ + G+ GaGkstll+ + G 
  MMETSP1061-20121228|21080_1 421 QNINLKIPRGMKLLLRGPNGAGKSTLLKALRGN 453
                  46789999*******************988875 PP

  == domain 4    score: 17.3 bits;  conditional E-value: 1e-05
    TIGR01277 126 peelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsls 190
                   + lsGG++ rval    ++   +l+ldep   ld      +          k+ ++++++h+ +
  MMETSP1061-20121228|21080_1 529 VKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAK-ALSGWGGKDGAVVVISHDRK 592
                  578*******************************9876554333.33334556777777777655 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.1   0.0   3.7e-15   2.2e-13     487     673 ..      80     287 ..      68     297 .. 0.81
   2 !   28.4   0.0   1.7e-09     1e-07     477     527 ..     402     452 ..     341     463 .. 0.88
   3 ?    1.1   0.0      0.31        19     614     656 ..     530     572 ..     522     591 .. 0.80

  Alignments for each domain:
  == domain 1    score: 47.1 bits;  conditional E-value: 3.7e-15
    TIGR03796 487 ysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgk.preeiprevlanslalvdqdivlfegtvrd.nltlwdet..ipeedl.vrAakDAaihdvilarpggyeae.....laeg...........ganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLs 673
                   s+ ++pl+++++ s++p +r  +vG  G+Gkst+   ++G  +  +G+ l+ ++ +   + +++++ s  +v  +     + + +  l l  +t  +++ d  ++A++D a  ++  ++ ggy++e     + +g            +++sGG + R+ +AR L ++Ps+L+lDE    LD+++   + + + +   ++++v+H +s
  MMETSP1061-20121228|21080_1  80 ISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSNvRVGYLRQSAVSGSTKTVAEEARSEMAHIEEaKLDLEAKTkiVEDGDYsEDALNDLAAAQEHFETIGGYQQEqlvdsVLKGlgfepedsdrlCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANYDGSVVLVSHDVS 287
                  467789******************************************98887651556788889999*********99999998844677655533677665257999*9988888899999987532222222222222223333479*******************************************************988 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 1.7e-09
    TIGR03796 477 kvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaG 527
                   ++l++ t gy + eapl+++++l++  G+++ l G+ G+Gkst+ k + G
  MMETSP1061-20121228|21080_1 402 LMTLNDATIGYDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRG 452
                  47899****************************************998766 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.31
    TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaide 656
                  + lsGG++ R+ +     k   +L+lDE    LD      + +
  MMETSP1061-20121228|21080_1 530 KALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAK 572
                  579***********9999999************9876555555 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   1.4e-05   0.00084       3      60 ..      75     132 ..      73     142 .. 0.92
   2 !   31.4   0.0   4.7e-10   2.8e-08     112     191 ..     210     286 ..     200     304 .. 0.82
   3 !   18.0   0.0   5.6e-06   0.00033      15      48 ..     419     452 ..     407     467 .. 0.89
   4 !   11.9   0.0   0.00043     0.026     129     166 ..     530     567 ..     519     610 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.4e-05
    TIGR00968   3 ianvskrfGdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrille 60 
                  ++nv+ + G    l++++ +v+  +  +++G  G+Gkstll +i+G  + d+G+ l++
  MMETSP1061-20121228|21080_1  75 LENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVH 132
                  6788889999999****************************************98877 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 4.7e-10
    TIGR00968 112 eellelvqle.klgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdq 191
                  + +l+ +++e + +dr  s++sGG + r+alar l  +p +llldep   ld+  +     wl k   + + + v+v+hd 
  MMETSP1061-20121228|21080_1 210 DSVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAK----DWLGKYIANYDGSVVLVSHDV 286
                  555555555523468999**********************************9765....688888888888889999986 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 5.6e-06
    TIGR00968  15 alddvdlevktGslvallGpsGsGkstllrviaG 48 
                   l++++l+++ G    l Gp G+Gkstll+++ G
  MMETSP1061-20121228|21080_1 419 LLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRG 452
                  5899**************************9988 PP

  == domain 4    score: 11.9 bits;  conditional E-value: 0.00043
    TIGR00968 129 sqlsGGqrqrvalaralavepqvllldepfgaldakvr 166
                  + lsGG++ rval        ++l+ldep   ld    
  MMETSP1061-20121228|21080_1 530 KALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCI 567
                  579**********9876677899**********97655 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   2.5e-05    0.0015       4      55 ..      96     141 ..      93     146 .. 0.84
   2 !   28.5   0.0   4.2e-09   2.5e-07     107     174 ..     223     287 ..     206     308 .. 0.85
   3 !   33.5   0.2   1.2e-10   7.2e-09       3     173 ..     427     591 ..     425     621 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 2.5e-05
    TIGR03771   4 dkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvp 55 
                  ++ e  g++G nGaGk+tll ai g +++ +G+  v ++      +++Gy+ 
  MMETSP1061-20121228|21080_1  96 QPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSN------VRVGYLR 141
                  56677899**************************99995......5566655 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 4.2e-09
    TIGR03771 107 adrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdla 174
                  +dr   ++sGG + r+ +ar l  kpslllldep   ld  +++ l + +   a+ + ++++++hd++
  MMETSP1061-20121228|21080_1 223 SDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYI---ANYDGSVVLVSHDVS 287
                  689999***************************************99765...666778999999976 PP

  == domain 3    score: 33.5 bits;  conditional E-value: 1.2e-10
    TIGR03771   3 vdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvls.GragliGllrrpkkadfaavadalervklt.eladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdl 173
                  + +G  l l GpnGaGk+tll+a+ g ++     ++ +g+  ++ r  +G   q      d      + v +  r+g  G +r +   d  a +  l r  l  e   r v  lsGG++ rv +      + +ll+ldep   ld+ ++  l++ ++   g++ a+++ +hd 
  MMETSP1061-20121228|21080_1 427 IPRGMKLLLRGPNGAGKSTLLKALRGNVP---EMIQ-SGERIENDRLFLGTFTQDLAQELDPEARAVDLVTDyARSGSDGDIRVT---D-EAARGVLGRLGLGgEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDR 591
                  6678788899******************9...3444.55568889999***9998877777666555555432788888888755...4.3567889999996366789*************998766677899*************************************95 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00019     0.011       3      69 ..      74     143 ..      72     173 .. 0.79
   2 !   32.4   0.0   2.1e-10   1.2e-08     119     215 ..     207     298 ..     181     318 .. 0.80
   3 !   18.8   0.0   2.9e-06   0.00017       3      48 ..     404     451 ..     402     479 .. 0.81
   4 !   12.4   0.0   0.00027     0.016     143     220 ..     530     609 ..     522     618 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00019
    TIGR00972   3 evknlklfygekealkdvnleikknkvtaliGpsGcGkstllrsln...rlndlveevrieGkvllegkd 69 
                  + +n+ ++ g    lk++n +++ ++  +++G  G+Gkstll ++    r+ +    v+ + +v +  ++
  MMETSP1061-20121228|21080_1  74 RLENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITgtvRMDEGKALVHSNVRVGYLRQS 143
                  67888899999999****************************9985444777777666666666665555 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 2.1e-10
    TIGR00972 119 eiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaf 215
                  ++v++ Lk+ ++  e  d+l       sGG q r+++ar l  +P +lLlDeP+  LD+ a   + + i++      +v+v h+++      + +a 
  MMETSP1061-20121228|21080_1 207 QLVDSVLKGLGFEPEDSDRL---CSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANYDG--SVVLVSHDVSLLDAGVNSIAE 298
                  56666677777766666666...4679******************************************98765..689999998765555555555 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 2.9e-06
    TIGR00972   3 evknlklfygekea..lkdvnleikknkvtaliGpsGcGkstllrsln 48 
                  + ++ ++ y  +ea  l+++nl+i++ +   l Gp G+Gkstll++l 
  MMETSP1061-20121228|21080_1 404 TLNDATIGYDPNEAplLQNINLKIPRGMKLLLRGPNGAGKSTLLKALR 451
                  56677778877764449****************************984 PP

  == domain 4    score: 12.4 bits;  conditional E-value: 0.00027
    TIGR00972 143 lsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLk.kkytivivthnmqqaarvs.dktaffleGe 220
                   +LsGG + r+++        ++l+lDeP+  LD    + + + ++    k+  +v++ h+ ++ ++v   ++  +++G+
  MMETSP1061-20121228|21080_1 530 KALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGgKDGAVVVISHDRKFCEKVGfTHVGTVMDGK 609
                  68***********976666679999**********999999999998862558999999999998888623344555555 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.1e-06   6.4e-05       7      63 ..      77     133 ..      72     143 .. 0.88
   2 !   24.5   0.0     6e-08   3.6e-06     106     167 ..     201     263 ..     187     338 .. 0.87
   3 !   14.5   0.0   6.8e-05     0.004      17      53 ..     419     455 ..     403     472 .. 0.84
   4 !   15.0   0.0   4.8e-05    0.0028     115     190 ..     512     589 ..     496     626 .. 0.78

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.1e-06
    TIGR03522   7 dlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavag 63 
                  +++ + g    l+e+ +++++ e  G +G nGaGkstl+  +tg ++ d G + v+ 
  MMETSP1061-20121228|21080_1  77 NVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHS 133
                  5566667778899**************************************999875 PP

  == domain 2    score: 24.5 bits;  conditional E-value: 6e-08
    TIGR03522 106 kgrklkkrveelielvGlkaeqhkki.galskGyrqrvGlakallhdPkvlildePttGldPn 167
                   g ++++ v+ +++  G+++e+  ++ +++s G++ r+ la+ ll +P++l+ldeP+  ld  
  MMETSP1061-20121228|21080_1 201 GGYQQEQLVDSVLKGLGFEPEDSDRLcSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSS 263
                  5566788999***********98876379******************************9975 PP

  == domain 3    score: 14.5 bits;  conditional E-value: 6.8e-05
    TIGR03522  17 aldevsfeaekGeivGflGPnGaGkstlmkiltgylk 53 
                   l+++ +++ +G  + + GPnGaGkstl+k l g ++
  MMETSP1061-20121228|21080_1 419 LLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVP 455
                  58899999*****9*9**************9988765 PP

  == domain 4    score: 15.0 bits;  conditional E-value: 4.8e-05
    TIGR03522 115 eelielvGlkaeq.hkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei.akdktvilsth 190
                  + ++ + Gl  e+  +k+ als G + rv l    l   ++l+ldeP+  ld   +  + + +    +kd +v++ +h
  MMETSP1061-20121228|21080_1 512 RGVLGRLGLGGEKpLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWgGKDGAVVVISH 589
                  5678889999997479************************************88877766555543145666655555 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   1.7e-06   9.8e-05     289     343 ..      77     131 ..      68     159 .. 0.88
   2 !   22.9   0.0     1e-07     6e-06     406     491 ..     212     289 ..     198     312 .. 0.80
   3 !   11.5   0.0   0.00028     0.016      12      50 ..     416     454 ..     403     466 .. 0.78
   4 !   17.5   0.0   4.3e-06   0.00026     425     506 ..     529     610 ..     520     615 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.7e-06
    TIGR03269 289 yisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevev 343
                   +++ rG    + +++  v+ ke +G+vG+ GaGk+tl   + G +   +G+  v
  MMETSP1061-20121228|21080_1  77 NVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALV 131
                  5789999999999**********************************99999765 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 1e-07
    TIGR03269 406 vlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfv 491
                  vlk  Gf+ e++    d+l +++s G + r+ala++l+ +p +++ldep+  +d  +k  + + i +     + + v+vshd+ ++
  MMETSP1061-20121228|21080_1 212 VLKGLGFEPEDS----DRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIAN----YDGSVVLVSHDVSLL 289
                  667777776665....688899999999999999999999999999999999999888887777764....577788899988665 PP

  == domain 3    score: 11.5 bits;  conditional E-value: 0.00028
    TIGR03269  12 glevlknisleleeGevlGilGksGaGksvllhllrGld 50 
                  +   l+ni+l++  G  l + G  GaGks ll+ lrG  
  MMETSP1061-20121228|21080_1 416 EAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNV 454
                  44579*******************************964 PP

  == domain 4    score: 17.5 bits;  conditional E-value: 4.3e-06
    TIGR03269 425 pdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevc.draalmrdGki 506
                   + ls Ge+ rval    +k  ++++ldep+  +d      +a+++       + + v++shd  f  +v    ++ + dGk+
  MMETSP1061-20121228|21080_1 529 VKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKAL-SGWGGKDGAVVVISHDRKFCEKVGfTHVGTVMDGKL 610
                  4689*******************************98888888875.4566678999******99998885245666666666 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.1   3.6e-07   2.1e-05       8      68 ..      72     132 ..      66     139 .. 0.93
   2 !   27.7   0.0   4.7e-09   2.8e-07     130     178 ..     221     269 ..     204     288 .. 0.80
   3 !   19.9   0.0   1.1e-06   6.6e-05      22     200 ..     418     591 ..     398     621 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 3.6e-07
    TIGR03258   8 GvvleslrvaygarvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllva 68 
                   ++le++ ++ ga  +l+++   +++ e   ++G  G+Gk+tll a++G v+ d G+ lv 
  MMETSP1061-20121228|21080_1  72 TLRLENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVH 132
                  5799***************************************************998875 PP

  == domain 2    score: 27.7 bits;  conditional E-value: 4.7e-09
    TIGR03258 130 daaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvv 178
                  + + rl + +sGG q r+alar l  +p +llldep   ld+  +  + 
  MMETSP1061-20121228|21080_1 221 EDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLG 269
                  45789999*********************************98776555 PP

  == domain 3    score: 19.9 bits;  conditional E-value: 1.1e-06
    TIGR03258  22 vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervad.alklvqls.daaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdr 200
                   +l+++ l+i  G  l l G+ G+Gk+tll+a+ G v          ++d   l  + ++la       l p  +  + v+   r+    +  +++  a   l  ++l+ +   r  + lsGG + rval        ++l+ldep   ld    + + + l     +  + +v++++hdr
  MMETSP1061-20121228|21080_1 418 PLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVPEMIQSGERIENDRLFLGTFTQDLAQE-----LDPEARAVDLVTDYARSGSDGDIRVTDEAARgVLGRLGLGgEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGK--DGAVVVISHDR 591
                  4799********************************9765422223356777888888888754.....66777888887766555555555554444431466777752567889999***********9988888999***********98777777666655444..45566666666 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   9.1e-05    0.0054     491     539 ..      82     130 ..      73     140 .. 0.86
   2 !   29.3   0.0   9.7e-10   5.8e-08     617     687 ..     229     300 ..     222     319 .. 0.87
   3 !   14.0   0.0     4e-05    0.0024     493     527 ..     416     450 ..     384     453 .. 0.81
   4 !   11.6   0.0   0.00021     0.013     616     680 ..     530     597 ..     527     617 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.1e-05
    TIGR00958 491 rpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvl 539
                  r   p+lk+++++++p e   +VG +G GKSt    +    + ++G+ l
  MMETSP1061-20121228|21080_1  82 RGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKAL 130
                  77899***************************98877766666666655 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 9.7e-10
    TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahrLstvek.adkilvlk 687
                    sgG + riA+AR L+ kP +L+LDe    LD+  +  l +   +++ +v+l+ h  s+    ++ i+ + 
  MMETSP1061-20121228|21080_1 229 DFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANYDGSVVLVSHDVSLLDAgVNSIAEIV 300
                  679******************************************************999865245555555 PP

  == domain 3    score: 14.0 bits;  conditional E-value: 4e-05
    TIGR00958 493 dkpvlkdLtftlepGevvalVGPsGsGKStvaall 527
                  + p+l+++++++  G    l GP+G GKSt    l
  MMETSP1061-20121228|21080_1 416 EAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKAL 450
                  679***************************87665 PP

  == domain 4    score: 11.6 bits;  conditional E-value: 0.00021
    TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe...sksaksrtvlliahrLstveka 680
                  + lsgG k r+A+    ++   +L+LDe    LD+ +   l +       k+ +v++i h  + +ek+
  MMETSP1061-20121228|21080_1 530 KALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKalsGWGGKDGAVVVISHDRKFCEKV 597
                  579********************************777666663222234677999999998888875 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-05    0.0017     337     386 ..      72     118 ..      32     143 .. 0.74
   2 !   20.3   0.0   6.8e-07     4e-05     476     513 ..     229     266 ..     215     284 .. 0.89
   3 !   18.1   0.0     3e-06   0.00018     352     386 ..     416     450 ..     390     457 .. 0.87
   4 !   14.7   0.0   3.2e-05    0.0019     473     533 ..     528     589 ..     500     598 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.8e-05
    TIGR02204 337 eiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllell 386
                   +++e+v  +   r   + l++++ +v+p e+  +vG  GaGkstll  +
  MMETSP1061-20121228|21080_1  72 TLRLENVAIS---RGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAI 118
                  5677777765...555669***************************9765 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 6.8e-07
    TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseq 513
                   +sGG + ria+ar +l +  +LLLde  + Ld+ + +
  MMETSP1061-20121228|21080_1 229 DFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKD 266
                  57*******************************98765 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 3e-06
    TIGR02204 352 dqkaldgldltvrpGetvalvGPsGaGkstllell 386
                  + + l++++l++  G ++ l GP GaGkstll+ l
  MMETSP1061-20121228|21080_1 416 EAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKAL 450
                  57889***************************976 PP

  == domain 4    score: 14.7 bits;  conditional E-value: 3.2e-05
    TIGR02204 473 rgvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelm.kgrttlviah 533
                  +   LsGG k r+a+    lk +++L+Lde  + Ld      + +al     k+ + +vi+h
  MMETSP1061-20121228|21080_1 528 KVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGgKDGAVVVISH 589
                  4568********************************99999999998875414555666666 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0012     0.073       9      49 ..      80     120 ..      72     128 .. 0.81
   2 !   22.2   0.0   1.6e-07   9.2e-06     378     449 ..     204     275 ..     186     301 .. 0.82
   3 !   16.8   0.0   6.5e-06   0.00039      15      59 ..     418     462 ..     402     472 .. 0.83
   4 !   19.2   0.0   1.3e-06   7.5e-05     386     472 ..     514     602 ..     495     616 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0012
    TIGR02633   9 kkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                   + g    l++i+  +++ e  ++ G nGaGkstl+  ++g
  MMETSP1061-20121228|21080_1  80 ISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITG 120
                  5556666789999**********************987766 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 1.6e-07
    TIGR02633 378 aelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinql 449
                  ++++ +++ +k l     + d   + +sGG q +  la+lll +p +l+ldep+  +d  ak  + k i++ 
  MMETSP1061-20121228|21080_1 204 QQEQLVDSVLKGLGFEPEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANY 275
                  56777888888888888888888999************************************9888877653 PP

  == domain 3    score: 16.8 bits;  conditional E-value: 6.5e-06
    TIGR02633  15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGe 59 
                    l+ni+lk+  G  + l G nGaGkstl+k l g  p    +Ge
  MMETSP1061-20121228|21080_1 418 PLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVPEMIQSGE 462
                  4599******************************99998777776 PP

  == domain 4    score: 19.2 bits;  conditional E-value: 1.3e-06
    TIGR02633 386 eikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsse..laevlGlsdr 472
                   + rl +   +p   + +lsGG++ +  l    l   ++l+ldep+  +dvG    + k ++    +  a++v+s +  + e +G +  
  MMETSP1061-20121228|21080_1 514 VLGRLGLGGEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDrkFCEKVGFTHV 602
                  56788888999999*********************************************999999999999999975225677776654 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   4.7e-05    0.0028     457     516 ..      74     131 ..      56     138 .. 0.82
   2 !   21.0   0.0   3.2e-07   1.9e-05     592     655 ..     228     289 ..     214     324 .. 0.77
   3 !   24.6   0.0   2.5e-08   1.5e-06     456     510 ..     403     456 ..     387     461 .. 0.86
   4 !    7.2   0.0    0.0047      0.28     592     650 ..     530     589 ..     518     614 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.7e-05
    TIGR01846 457 efenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlv 516
                  ++en+    ++ ++++l++++ ++++ e  GivG  G+Gkstl   +      ++G+ lv
  MMETSP1061-20121228|21080_1  74 RLENVAI--SRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALV 131
                  5555543..4667899***************************98888877778888777 PP

  == domain 2    score: 21.0 bits;  conditional E-value: 3.2e-07
    TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstv 655
                  + +sGG + rialar l+++P +l+lde    ld  + + + + + +   +  v+ ++h +s +
  MMETSP1061-20121228|21080_1 228 SDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANY--DGSVVLVSHDVSLL 289
                  578*******************************99988877766553..44566666766655 PP

  == domain 3    score: 24.6 bits;  conditional E-value: 2.5e-08
    TIGR01846 456 iefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPe 510
                  +++++ +  y+++++++l+n++l+i+ G  + + Gp G+Gkstl k l r +vPe
  MMETSP1061-20121228|21080_1 403 MTLNDATIGYDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKAL-RGNVPE 456
                  688899999***********************************9987.556665 PP

  == domain 4    score: 7.2 bits;  conditional E-value: 0.0047
    TIGR01846 592 aalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei.ckgrtviiiah 650
                   alsGG + r+al    ++   +l+lde    ld    + + + l+    k+ +v++i+h
  MMETSP1061-20121228|21080_1 530 KALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWgGKDGAVVVISH 589
                  68********************************98888887777765246667777777 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   0.00046     0.027       1      41 [.      88     128 ..      88     136 .. 0.89
   2 !   30.4   0.0   9.7e-10   5.8e-08      88     175 ..     202     286 ..     186     295 .. 0.83
   3 !    8.7   0.0    0.0044      0.26       1      33 [.     420     452 ..     420     465 .. 0.92
   4 !   13.6   0.0   0.00014    0.0083     110     174 ..     527     590 ..     508     595 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00046
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsga 41 
                  lk+++ +++  e   ++g  g gkstll  i+g  +  +g 
  MMETSP1061-20121228|21080_1  88 LKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGK 128
                  799******************************88877765 PP

  == domain 2    score: 30.4 bits;  conditional E-value: 9.7e-10
    TIGR01184  88 kserreiveehielvglr.eaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdv 175
                    +++++v++ ++ +g++ e +d+  +++sgg + r+a+ar l  +p lllldep   ld+ +++ l     k + + + +v++v+hdv
  MMETSP1061-20121228|21080_1 202 GYQQEQLVDSVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLG----KYIANYDGSVVLVSHDV 286
                  567899999999999987356788899*********************************98887765....45566778899999998 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0044
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliag 33 
                  l++++l+i +g  + l g  g gkstll  + g
  MMETSP1061-20121228|21080_1 420 LQNINLKIPRGMKLLLRGPNGAGKSTLLKALRG 452
                  689*************************98766 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 0.00014
    TIGR01184 110 krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthd 174
                  ++++ lsgg k rva+        +ll+ldep   ld    + l +  l  +  ++ +v++++hd
  MMETSP1061-20121228|21080_1 527 RKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKA-LSGWGGKDGAVVVISHD 590
                  57889***********987777899************9988888765.56677888888888888 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   1.4e-06   8.4e-05       5      69 ..      73     137 ..      70     157 .. 0.89
   2 !   23.9   0.0   6.5e-08   3.9e-06     113     172 ..     206     266 ..     185     284 .. 0.83
   3 !   19.5   0.1   1.5e-06   8.7e-05      20     167 ..     420     563 ..     403     576 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.4e-06
    TIGR01288   5 idlvgvsksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvp 69 
                  + l +v+ s g   +++++ +++   e +g++g ngagkst+   + g +  degk  v ++   
  MMETSP1061-20121228|21080_1  73 LRLENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSNVRV 137
                  5688999999**********************************************988776555 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 6.5e-08
    TIGR01288 113 eevipsllefarlesk.advrvadlsggmkrrltlaralindpqllildepttgldpharh 172
                  e+ + s+l+   +e   +d   +d+sgg + r++lar l+  p ll+ldep+  ld  a+ 
  MMETSP1061-20121228|21080_1 206 EQLVDSVLKGLGFEPEdSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKD 266
                  566666666666665415666799********************************99986 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 1.5e-06
    TIGR01288  20 vndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpq..fdnldreftvrenllvfgryfg.lstreieevipsllefarles.kadvrvadlsggmkrrltlaralindpqllildepttgld 167
                  ++++ + i +g  + l gpngagkst+ + + g ++           +   r+   r  +g  +q   ++ld+e  + + +  + r  +  + r  +e+   +l    l   k   +v  lsgg k r++l +  ++  +ll+ldep+  ld
  MMETSP1061-20121228|21080_1 420 LQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVPEM--------IQSGERIENDRLFLGTFTQdlAQELDPEARAVDLVTDYARSGSdGDIRVTDEAARGVLGRLGLGGeKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLD 563
                  567888999999999************99999877542........2445677778888998888334677888777777777888754156788899999998877776516667899*****************************9998 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.2   1.4e-09     8e-08      34     200 ..      81     263 ..      67     272 .. 0.76
   2 !    9.7   0.0    0.0011     0.063      36      80 ..     415     459 ..     396     470 .. 0.81
   3 !   21.8   0.0   2.2e-07   1.3e-05     163     220 ..     528     585 ..     521     594 .. 0.84

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.4e-09
    TIGR00955  34 kkpekellknvsGvaksGellAvlGsSGaGKtTLlnalaf..rsekg.lkvsgd........vllnGe.kveakemraisayvqqddlfiptlt........vrehLmfsahlrlkrrltkk.ekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsf 200
                  +++ + llk++   +++ e   ++G  GaGK+TLl a++   r  +g   v+++         ++ G  k  a+e r   a++++  l ++  t         +++L+  a  + + ++    ++++ v+ vl+ lg +     r          SgG + R+ala  ll++P+lL++DEP   LDs 
  MMETSP1061-20121228|21080_1  81 SRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGtvRMDEGkALVHSNvrvgylrqSAVSGStKTVAEEARSEMAHIEEAKLDLEAKTkivedgdySEDALNDLAAAQEHFETIGGyQQEQLVDSVLKGLGFEPEDSDRLC-S----DFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSS 263
                  45678899999999999999*****************986223333323334444444444456788624557899999*****9877776666432333323567887777777766666669***************99999988.3....48*******************************95 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0011
    TIGR00955  36 pekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglk 80 
                  +e  ll+n+  ++  G  l + G+ GaGK+TLl+al    ++ ++
  MMETSP1061-20121228|21080_1 415 NEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVPEMIQ 459
                  667799999999999999999**************9877665555 PP

  == domain 3    score: 21.8 bits;  conditional E-value: 2.2e-07
    TIGR00955 163 rvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktvi 220
                  +vk+lSgGe+ R+al+  +l+   lL++DEP   LD    + + k+L +   k   v+
  MMETSP1061-20121228|21080_1 528 KVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVV 585
                  68**********************************9888888887777665555444 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   1.7e-09     1e-07     344     504 ..      83     263 ..      37     270 .. 0.73
   2 !   17.1   0.0   5.5e-06   0.00033     333     379 ..     404     450 ..     393     466 .. 0.90
   3 !   10.7   0.0   0.00049     0.029     468     504 ..     529     565 ..     500     595 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 1.7e-09
    TIGR02203 344 ddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgv.dladlk...........LasLRrqvalvsqdvv.LFddt.iaenvaYgeleevdeaeveealaa...aylkdlvdklpeGldtevGen...gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDne 504
                     + l++i+ +v++ e+  +vG  G+Gkstl+  ++  + +d+G+ l+  +  +  l+            ++ R+++a +    + L   t i+e+  Y+e +  d a  +e  ++    + ++lvd++ +Gl +e  +     s  sGG   R+a+aR ll    +L+LDe    LD+ 
  MMETSP1061-20121228|21080_1  83 GASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSNvRVGYLRqsavsgstktvAEEARSEMAHIEEAKLdLEAKTkIVEDGDYSEDALNDLAAAQEHFETiggYQQEQLVDSVLKGLGFEPEDSdrlCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSS 263
                  345789****************************************99875413322221111111111135678888888765441443334899999999855554444444333110456679********99865542236889******************************985 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 5.5e-06
    TIGR02203 333 efrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnll 379
                   +++ t+ y +++++ l++i+lk+  G  + l G+ G+Gkstl++ l
  MMETSP1061-20121228|21080_1 404 TLNDATIGYDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKAL 450
                  56677899***********************************9865 PP

  == domain 3    score: 10.7 bits;  conditional E-value: 0.00049
    TIGR02203 468 gskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDne 504
                     LsGG + R+a+    lk + +L+LDe    LD  
  MMETSP1061-20121228|21080_1 529 VKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVG 565
                  567***************************9999975 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.1    0.0056      0.33       1      29 [.     103     131 ..     103     140 .. 0.89
   2 !   31.7   0.0   2.9e-10   1.7e-08      92     141 ..     221     270 ..     200     288 .. 0.80
   3 ?    3.7   0.0     0.097       5.8       2      18 ..     436     452 ..     434     471 .. 0.86
   4 !   15.5   0.0   2.6e-05    0.0015      95     134 ..     526     565 ..     506     611 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0056
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkill 29 
                  ++G  G+Gk+tlL  + G  ++d+Gk l+
  MMETSP1061-20121228|21080_1 103 IVGINGAGKSTLLGAITGTVRMDEGKALV 131
                  57999********************9876 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 2.9e-10
    TIGR01187  92 efakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmql 141
                  e ++r  s++sGG + r+alar +  kP +LLlDep   LD   +d + +
  MMETSP1061-20121228|21080_1 221 EDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGK 270
                  45788899*********************************988876654 PP

  == domain 3    score: 3.7 bits;  conditional E-value: 0.097
    TIGR01187   2 LGpsGsGkttlLrllaG 18 
                   Gp G+Gk+tlL+ l G
  MMETSP1061-20121228|21080_1 436 RGPNGAGKSTLLKALRG 452
                  59***********9988 PP

  == domain 4    score: 15.5 bits;  conditional E-value: 2.6e-05
    TIGR01187  95 krkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkk 134
                   rk++ lsGG + rval     k  ++L+lDep   LD  
  MMETSP1061-20121228|21080_1 526 LRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVG 565
                  6999*****************************9999965 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   0.00017    0.0099     474     532 ..      73     130 ..      64     153 .. 0.83
   2 !   20.5   0.0   5.1e-07     3e-05     609     701 ..     227     321 ..     207     327 .. 0.77
   3 !   13.0   0.0   9.6e-05    0.0057     486     521 ..     416     451 ..     396     468 .. 0.82
   4 !   11.1   0.0   0.00036     0.021     609     645 ..     529     565 ..     515     617 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00017
    TIGR01193 474 ievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvkffqaesGeil 532
                  +++++v  s G +s++l++i+ +++ +e+  +vG+ G+Gkstl   + +    ++G+ l
  MMETSP1061-20121228|21080_1  73 LRLENVAISRG-ASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKAL 130
                  56667777777.5789***************************9888777777666655 PP

  == domain 2    score: 20.5 bits;  conditional E-value: 5.1e-07
    TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvahrlsvakk.sdkiivldeGkiie..qGshkellkenGf 701
                   s  sgG + r+alar lls+  +l+lde + +ld    k  + + +   d ++++v+h +s+ +  ++ i  +    i+e  + s+++ l+e+ f
  MMETSP1061-20121228|21080_1 227 CSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSA-KDWLGKYIANYDGSVVLVSHDVSLLDAgVNSIAEIVGNTIVEyrSCSYNKYLEEKEF 321
                  5789*******************************976.556677777779*********998776145555566666777434677888777766 PP

  == domain 3    score: 13.0 bits;  conditional E-value: 9.6e-05
    TIGR01193 486 gsevledislkikknekitlvGlsGsGkstlakllv 521
                   +++l++i+lki +  k+ l G  G+Gkstl k l 
  MMETSP1061-20121228|21080_1 416 EAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALR 451
                  35799***************************9875 PP

  == domain 4    score: 11.1 bits;  conditional E-value: 0.00036
    TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldll 645
                    ++sgG k r+al    l  s++l+lde + +ld+ 
  MMETSP1061-20121228|21080_1 529 VKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVG 565
                  5789*******************************85 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0     0.013       0.8       2      37 ..      88     123 ..      87     155 .. 0.85
   2 !   23.4   0.0   1.2e-07   7.3e-06     125     208 ..     229     308 ..     204     320 .. 0.86
   3 ?    7.0   0.0     0.012       0.7       1      43 [.     419     460 ..     419     474 .. 0.85
   4 !   18.5   0.0   3.7e-06   0.00022     125     208 ..     531     615 ..     517     623 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.013
    TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglld 37 
                   +++n s++  +  ++vG  G+Gks+   ai g+  
  MMETSP1061-20121228|21080_1  88 LKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVR 123
                  6899**********************9999998865 PP

  == domain 2    score: 23.4 bits;  conditional E-value: 1.2e-07
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkiverg 208
                  ++sGG   R+ +a  ll++++ll+ DeP+  lD  ++      l +   + + +++l++hD++ +    + +a +    ive +
  MMETSP1061-20121228|21080_1 229 DFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKD----WLGKYIANYDGSVVLVSHDVSLLDAGVNSIAEIVGNTIVEYR 308
                  689***99*999999******************98874....566666788999*********998888888877777777765 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.012
    TIGR02770   1 lvqdvnlslkrgkvlalvGesGsGksltalailglldkeltkt 43 
                  l q++nl++ rg  l l G  G+Gks+  +a+ g  + e++++
  MMETSP1061-20121228|21080_1 419 LLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVP-EMIQS 460
                  679***************************9999887.44444 PP

  == domain 4    score: 18.5 bits;  conditional E-value: 3.7e-06
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaela.devavmekGk.iverg 208
                   lsGG   Rv + +  l  + ll+ DeP+  lDv     + k l+    k+g ++++i+hD +   ++   +v  + +Gk ++e++
  MMETSP1061-20121228|21080_1 531 ALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDG-AVVVISHDRKFCEKVGfTHVGTVMDGKlLLEQR 615
                  69*******************************************9988776.7899****9888877533454444455144555 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   0.00024     0.014      11      63 ..      83     135 ..      73     171 .. 0.85
   2 !   19.7   0.0   1.4e-06   8.4e-05     138     180 ..     221     263 ..     184     291 .. 0.80
   3 !   14.4   0.0   5.9e-05    0.0035      15      56 ..     419     462 ..     406     478 .. 0.82
   4 !    9.2   0.0    0.0023      0.14     131     211 ..     515     595 ..     501     613 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 0.00024
    TIGR03005  11 geltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeq 63 
                  g   +l++++ +v++ e+  ++G  G+Gkst+l  +    ++deG+  v+++ 
  MMETSP1061-20121228|21080_1  83 GASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSNV 135
                  55667999****************************9999*****99997765 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.4e-06
    TIGR03005 138 dkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpe 180
                  +  d l + +sGG + r+a+ar l  +p +ll+de++  ld  
  MMETSP1061-20121228|21080_1 221 EDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSS 263
                  45788999*******************************9975 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 5.9e-05
    TIGR03005  15 vldglelevaaGekvaliGpsGsGkstilrilmt..letideGs 56 
                  +l++++l++ +G k+ l Gp G+Gkst+l+ l     e i+ G+
  MMETSP1061-20121228|21080_1 419 LLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGnvPEMIQSGE 462
                  799***************************99641146666665 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.0023
    TIGR03005 131 ldmvGlad.kadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfar 211
                  l  +Gl+  k       lsGG+k rva+        ++l++de++  ld   +  + + l   +  +d ++++++h+ +f +
  MMETSP1061-20121228|21080_1 515 LGRLGLGGeKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGG-KDGAVVVISHDRKFCE 595
                  55566654033344567***********8644445678899********9888877777766654.4566677777766655 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   2.5e-05    0.0015     437     486 ..      83     133 ..      65     150 .. 0.65
   2 !   18.5   0.0   9.8e-07   5.8e-05    1355    1451 ..     231     327 ..     205     370 .. 0.76
   3 !   12.8   0.0   5.1e-05     0.003    1218    1265 ..     403     450 ..     393     465 .. 0.80
   4 !    9.0   0.0   0.00071     0.042     548     581 ..     531     564 ..     523     572 .. 0.93

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.5e-05
    TIGR01271 437 yvtpvlknislklekgqllavagstgsgkssllmmilgelepsegk.ikhs 486
                   ++p+lk+i++ ++  +   + g  g+gks+ll  i g +   egk + hs
  MMETSP1061-20121228|21080_1  83 GASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKaLVHS 133
                  456777777777777777777777777777777777777777777632344 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 9.8e-07
    TIGR01271 1355 snghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrvealle.cqqflviegssvkqydsi..qkllneasllkqalsa 1451
                   s g +  + lar +lsk  +llldeps +ld  + + + k + +   + +v+l  h v  l    +++  i g+++ +y s   +k l+e+  ++ a ++
  MMETSP1061-20121228|21080_1  231 SGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIAN--YDGSVVLVSHDVSLLDAgVNSIAEIVGNTIVEYRSCsyNKYLEEKE-FRAASAQ 327 
                   567778899****************************9998854..688999999*997664325677788899999887642267777753.4444443 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 5.1e-05
    TIGR01271 1218 mtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                   mt++d t+ y  +   +lq++ + +  g ++ l g  g+gkstll al
  MMETSP1061-20121228|21080_1  403 MTLNDATIGYDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKAL 450 
                   778888888888888888888888888888888888888888888886 PP

  == domain 4    score: 9.0 bits;  conditional E-value: 0.00071
    TIGR01271 548 tlsggqrarislaravykdadlylldspfsyldv 581
                  +lsgg++ar++l     k ++l +ld p ++ldv
  MMETSP1061-20121228|21080_1 531 ALSGGEKARVALGMFALKASNLLMLDEPSNHLDV 564
                  69*******************************9 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.1    0.0014     0.086      42      86 ..      90     134 ..      76     151 .. 0.86
   2 !   23.7   0.0   7.6e-08   4.5e-06     142     226 ..     206     287 ..     194     311 .. 0.79
   3 !    9.4   0.0    0.0016     0.097      41      72 ..     421     452 ..     416     467 .. 0.90
   4 !   13.2   0.0   0.00012    0.0069     160     243 ..     527     610 ..     516     618 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0014
    TIGR03415  42 dasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkde 86 
                  +++ +v+  e   ++G+ G+Gks+ll a+ g   +  Gk lv+ +
  MMETSP1061-20121228|21080_1  90 EINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSN 134
                  556677777778899***********************9999875 PP

  == domain 2    score: 23.7 bits;  conditional E-value: 7.6e-08
    TIGR03415 142 rkrveeqlelvgla.eWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdld 226
                   + v+  l+ +g++ e +d+   ++sGG q r+ lar +  +  +ll+deP   ld       +d l ++ ++    +v+vshd+ 
  MMETSP1061-20121228|21080_1 206 EQLVDSVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDS----SAKDWLGKYIANYDGSVVLVSHDVS 287
                  55666666666665356789999*********************************6....5678888888999999*******75 PP

  == domain 3    score: 9.4 bits;  conditional E-value: 0.0016
    TIGR03415  41 adasldveeGeilvlmGlsGsGkssllravng 72 
                  ++++l++ +G  l+l G  G+Gks+ll+a+ g
  MMETSP1061-20121228|21080_1 421 QNINLKIPRGMKLLLRGPNGAGKSTLLKALRG 452
                  6899*************************876 PP

  == domain 4    score: 13.2 bits;  conditional E-value: 0.00012
    TIGR03415 160 kkvgelsGGmqqrvGlarafatea.dillmdePfsaldPliraklqdellelqkklkktivfvshdldealklG.nriaimegGri 243
                  +kv+ lsGG + rv l   fa++a ++l++deP   ld    + l   l     k   ++v +shd     k+G +++  + +G++
  MMETSP1061-20121228|21080_1 527 RKVKALSGGEKARVALGM-FALKAsNLLMLDEPSNHLDVGCISGLAKALSGWGGK-DGAVVVISHDRKFCEKVGfTHVGTVMDGKL 610
                  799*************86.66665166667********99999999999888877.678888999999888888556766666665 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0     0.002      0.12      21      65 ..      88     132 ..      80     152 .. 0.86
   2 !   22.2   0.0   2.1e-07   1.3e-05     123     224 ..     211     309 ..     193     319 .. 0.79
   3 !   12.3   0.0   0.00023     0.014      21      60 ..     420     461 ..     412     482 .. 0.83
   4 !    8.3   0.0    0.0037      0.22     136     224 ..     527     616 ..     505     621 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.002
    TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivd 65 
                  l++++  v   + +g++g  gagkstl+  +    +  +g+ +v 
  MMETSP1061-20121228|21080_1  88 LKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVH 132
                  7899999999999***************99998888888888886 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 2.1e-07
    TIGR02314 123 ellalvgls.dkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgt 224
                   +l  +g+  +  d   s++sgg + r+a+ar l s+p +ll de +  ld ++   +    k i  + + +++l++h++ ++    +++a i +  ++e  +
  MMETSP1061-20121228|21080_1 211 SVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLG---KYIA-NYDGSVVLVSHDVSLLDAGVNSIAEIVGNTIVEYRS 309
                  55555554336778899**********************************87765433...3443.445578889999999999999999888888888665 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 0.00023
    TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircv..nllekptsg 60 
                  l+n++l +p+g  + + g  gagkstl++ +  n+ e   sg
  MMETSP1061-20121228|21080_1 420 LQNINLKIPRGMKLLLRGPNGAGKSTLLKALrgNVPEMIQSG 461
                  89*************************997633555555555 PP

  == domain 4    score: 8.3 bits;  conditional E-value: 0.0037
    TIGR02314 136 sypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkric.devavidkge.liekgt 224
                       lsgg+k rva+         +l+ de +  ld      + + l     + g ++++i+h+ +   ++   +v  + +g+ l+e+ +
  MMETSP1061-20121228|21080_1 527 RKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDG-AVVVISHDRKFCEKVGfTHVGTVMDGKlLLEQRS 616
                  45578***********987777788999*********9999999999988888776.5678999998887774256666666651467765 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0016     0.096     419     523 ..      30     142 ..       4     155 .. 0.70
   2 !   15.4   0.0   1.7e-05     0.001     584     643 ..     230     289 ..     210     291 .. 0.94
   3 !   23.3   0.0   7.1e-08   4.2e-06     463     504 ..     414     455 ..     408     471 .. 0.87
   4 ?   -0.3   0.0         1        59     583     612 ..     531     560 ..     528     566 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0016
    TIGR00954 419 fkrprveekesaeee..srkselvag......rgkveaqd..ngikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvygglltkpeegklFyvPq 523
                   k +  e+++s++    s +   v+g       g+++ +    ++++en+ +     + l++e++  v+  +   i+G nG GKs l   +++   +  g+  + ++ ++ y+ q
  MMETSP1061-20121228|21080_1  30 SKSSVAESTASTN-RlfSSTKAVVEGgataepYGTIVGDTrgATLRLENVAISRG-ASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHSNVRVGYLRQ 142
                  3333333322222.23545555566678888778887665115689999987654.56789**************************9999888888888888888887777766 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.7e-05
    TIGR00954 584 LsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrksLw 643
                   sgG + Ria+ARl+  kP   +LDE  + +     d l + + +++ +++ vsh  sL+
  MMETSP1061-20121228|21080_1 230 FSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANYDGSVVLVSHDVSLL 289
                  69******************************9999999999999999999999999986 PP

  == domain 3    score: 23.3 bits;  conditional E-value: 7.1e-08
    TIGR00954 463 PegdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWP 504
                  P+   l+++++++++ G++lL+ GPnG GKs l + l +  P
  MMETSP1061-20121228|21080_1 414 PNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVP 455
                  88899****************************999876555 PP

  == domain 4    score: -0.3 bits;  conditional E-value: 1
    TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEcts 612
                   LsgGek R+a+  +     +  +LDE  +
  MMETSP1061-20121228|21080_1 531 ALSGGEKARVALGMFALKASNLLMLDEPSN 560
                  69**********988888888888998766 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00035     0.021     463     499 ..      82     118 ..       2     135 .. 0.81
   2 !   18.2   0.0   2.6e-06   0.00015     588     646 ..     229     287 ..     225     300 .. 0.92
   3 !   16.5   0.0   8.1e-06   0.00048     454     501 ..     405     452 ..     382     459 .. 0.91
   4 ?    0.3   0.0      0.67        40     587     620 ..     530     563 ..     527     576 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00035
    TIGR03797 463 kdgplvLddvslkiepGefvaivGaSGsGKStllrlL 499
                  + ++  L++++ +++p e  +ivG  G+GKStll  +
  MMETSP1061-20121228|21080_1  82 RGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAI 118
                  567889***************************9655 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 2.6e-06
    TIGR03797 588 tlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLS 646
                    SGG + R+ +Ar l +kP +ll+DE    LD  ++    + +++   + +++ H +S
  MMETSP1061-20121228|21080_1 229 DFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIANYDGSVVLVSHDVS 287
                  68**********************************99999999999999999999877 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 8.1e-06
    TIGR03797 454 vdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLg 501
                  ++  t  Y+++ +  L++++lki  G  + + G+ G+GKStll+ L g
  MMETSP1061-20121228|21080_1 405 LNDATIGYDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRG 452
                  6677889*************************************9866 PP

  == domain 4    score: 0.3 bits;  conditional E-value: 0.67
    TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALD 620
                  ++lSGG + R+ +     +  ++l++DE    LD
  MMETSP1061-20121228|21080_1 530 KALSGGEKARVALGMFALKASNLLMLDEPSNHLD 563
                  68************999999********998888 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   0.0     0.035       2.1       5      52 ..      84     131 ..      81     146 .. 0.84
   2 !   28.4   0.0   3.1e-09   1.9e-07     110     190 ..     209     286 ..     186     296 .. 0.87
   3 !    7.5   0.0    0.0069      0.41      10      39 ..     421     450 ..     417     459 .. 0.92
   4 ?    5.6   0.0     0.026       1.5     111     189 ..     512     590 ..     498     602 .. 0.71

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.035
    TIGR01186   5 lklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkili 52 
                  ++  +++++ +++  e   i+G+ G+Gkstl+  +   +   +Gk l+
  MMETSP1061-20121228|21080_1  84 ASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALV 131
                  5566799999*********************99888777777777665 PP

  == domain 2    score: 28.4 bits;  conditional E-value: 3.1e-09
    TIGR01186 110 alealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdl 190
                     +lk +++ +e  dr   ++sGG q r+ lar l  +P lll+de+   ld     + +d l k  ++++ ++v+++hd+
  MMETSP1061-20121228|21080_1 209 VDSVLKGLGFePEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDS----SAKDWLGKYIANYDGSVVLVSHDV 286
                  445689999988999**************************************6....566778899999999*******97 PP

  == domain 3    score: 7.5 bits;  conditional E-value: 0.0069
    TIGR01186  10 ndvdleieeGeiiviiGlsGsGkstlvrll 39 
                  ++++l+i  G  + + G+ G+Gkstl++ l
  MMETSP1061-20121228|21080_1 421 QNINLKIPRGMKLLLRGPNGAGKSTLLKAL 450
                  799************************977 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.026
    TIGR01186 111 lealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                  + +l  ++l  e   r  + lsGG + rv l        +ll++de+   ld    + l + l     k   ++v i+hd
  MMETSP1061-20121228|21080_1 512 RGVLGRLGLgGEKPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKD-GAVVVISHD 590
                  55555555544444556678**********98766667899*******9999766666666655554443.345556665 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1     7e-06   0.00042    1929    2000 ..      64     133 ..      50     148 .. 0.85
   2 !   17.7   0.0   1.1e-06   6.7e-05    2046    2144 ..     204     300 ..     175     315 .. 0.81
   3 !   11.0   0.0   0.00012    0.0069    1937    2137 ..     402     598 ..     391     614 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 7e-06
    TIGR01257 1929 isggnktdilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdttvtsgdatvag 2000
                   i g  +   lrl++++   s  +sp +  +   v+p e +g++g+ngagk+t +  +tg   +  g a v  
  MMETSP1061-20121228|21080_1   64 IVGDTRGATLRLENVA--ISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHS 133 
                   6677777888888765..456679*************************************99999998865 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 1.1e-06
    TIGR01257 2046 eiekvanwsikslgls.lyadrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlaimv 2144
                   + e++ +  +k lg+    +drl+  +sgg + +++ a  l+  p l+lldep+  +d  a+  l + i      + +vvl sh +   +a +  +a +v
  MMETSP1061-20121228|21080_1  204 QQEQLVDSVLKGLGFEpEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSAKDWLGKYIA---NYDGSVVLVSHDVSLLDAGVNSIAEIV 300 
                   45667777788888862468*******************************************9998765...568899*****9988888777777666 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00012
    TIGR01257 1937 ilrlneltkvysgtsspavdrlcvgvrpgecfgllgvngagktttfkmltgdt..tvtsgdatvagksiltni.sdvhqnmgycpqfdaiddlltgrehlylyarlrgvpaeei.ekvanwsikslglsly.adrlagtysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealc 2137
                   ++ ln+ t  y  + +p ++ + + +  g  + l g ngagk+t +k l g+    + sg+     +  l +   d+ q++   p+  a+d l+t       yar        + ++ a   +  lgl      r   + sgg+k +++  +  + +  l++ldep+  +d  +   l +++ +   ++ avv+ sh  + ce + 
  MMETSP1061-20121228|21080_1  402 LMTLNDATIGYDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVpeMIQSGERIENDRLFLGTFtQDLAQELD--PEARAVD-LVTD------YARSGSDGDIRVtDEAARGVLGRLGLGGEkPLRKVKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHDRKFCEKVG 598 
                   678999999999999999999999999999999******************9633689999999999888654167778765..8888886.6665......6665444333331445555667888875414578899***********9999999*********************************************9864 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.1   0.00035     0.021     633     708 ..      67     144 ..      33     155 .. 0.78
   2 !   12.0   0.0     9e-05    0.0053     760     874 ..     229     337 ..     222     370 .. 0.72
   3 !   20.2   0.0     3e-07   1.8e-05     618     688 ..     384     454 ..     378     465 .. 0.90
   4 ?    0.8   0.0      0.21        12     760     793 ..     531     564 ..     520     610 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00035
    TIGR00957 633 egnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegk..valkgsvayvpqqa 708
                  +    t++    + +r+  p l+ ++ s+       +vg  g gks+ll a+ + +   egk  v+ +  v y+ q a
  MMETSP1061-20121228|21080_1  67 DTRGATLRLENVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKalVHSNVRVGYLRQSA 144
                  555667777777788888899999999998888888999999999999999988777777762244445567777765 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 9e-05
    TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavdahvakhifekvigpkgllknktrilvthgisylpq.vdviivlsdgkisem..gsyqelldrdgafaeflrtyasaedeldaedd 874
                  ++sgg + r++lar + s+  + lld+p   +d+   k  + k i       + + +lv+h +s l   v+ i  + +  i e    sy++ l+ +    ef  + a+ae e+++e+ 
  MMETSP1061-20121228|21080_1 229 DFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSSA-KDWLGKYIAN----YDGSVVLVSHDVSLLDAgVNSIAEIVGNTIVEYrsCSYNKYLEEK----EFRAASAQAEYERNLEEA 337
                  579******************************975.5555555543....345779********9743899999999999997335799888764....444555555555555543 PP

  == domain 3    score: 20.2 bits;  conditional E-value: 3e-07
    TIGR00957 618 elepdsierrsikdgegnsitvknatftwardepptlngltlsipegalvavvgqvgcgkssllsallaem 688
                  e +p+ +   + k+ + + +t+++at+ +  +e p l++++l+ip+g  + + g+ g gks+ll al +++
  MMETSP1061-20121228|21080_1 384 ERDPELVLPTPPKPNGEYLMTLNDATIGYDPNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNV 454
                  67888888888888888**************************************************8875 PP

  == domain 4    score: 0.8 bits;  conditional E-value: 0.21
    TIGR00957 760 nlsggqkqrvslaravysdadiyllddplsavda 793
                   lsgg+k rv+l       +++ +ld+p   +d 
  MMETSP1061-20121228|21080_1 531 ALSGGEKARVALGMFALKASNLLMLDEPSNHLDV 564
                  69***********999999********9988876 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   7.4e-12   4.4e-10      20     197 ..      89     284 ..      71     293 .. 0.70
   2 ?    5.3   0.0     0.045       2.7      21      52 ..     423     455 ..     402     481 .. 0.80

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 7.4e-12
    TIGR02323  20 r.vsf.lypGevlgivGesGsGkstllkalaarlladaGevty..esrsrelellalseaerrl..llrtewGlvhqnprGl..rmevsaGanigerl...lavgarhyGkiraaak..wlekv......eidaarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth 197
                  + +++ + p e  givG  G+Gkstll a+++ +  d+G++    + r + l   a+s + + +   +r+e   +++    l  + ++   ++ +e     la  + h+ +i   ++   ++ v      e + +    + fsGG q r+ +ar l+++p l+++ ep+  l s       l + + + + +v++v+h
  MMETSP1061-20121228|21080_1  89 KeINWsVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVhsNVRVGYLRQSAVSGSTKTVaeEARSEMAHIEEAKLDLeaKTKIVEDGDYSEDAlndLAAAQEHFETIGGYQQeqLVDSVlkglgfEPEDSDRLCSDFSGGWQMRIALARLLLSKPSLLLLdEPSNHLDSSAKDW--LGKYIANYDGSVVLVSH 284
                  44888899******************************997550055666666666766666541158999999988888662245667777788764233689999*988864443323333322222233444457899***********************999*99996654433..34566778888888887 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.045
    TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaarll 52 
                  +++ +  G  l + G  G+Gkstllkal +++ 
  MMETSP1061-20121228|21080_1 423 INLkIPRGMKLLLRGPNGAGKSTLLKALRGNVP 455
                  55534457778899*************998764 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   9.5e-05    0.0056     351     505 ..      88     263 ..      32     274 .. 0.66
   2 ?    4.7   0.0     0.035       2.1     345     382 ..     414     451 ..     400     469 .. 0.85
   3 !   14.3   0.0   4.3e-05    0.0026     470     515 ..     530     575 ..     516     611 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 9.5e-05
    TIGR01192 351 vrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilid.gvdiatvtreslrksiatvfqdagllnrsire.nirlgred.at.deevveaa..kaaaas............dfiekrlkg..ydtlvger.gnrlsggerqrlaiarailknapilvldeatsaldve 505
                  ++++ + ++  +   ivg  gagk+tl+  +      ++g+ l+   v +  + + ++  s  tv ++a      i e  + l  ++    d +  e a  + aaa+            +++++ lkg  ++    +r  + +sgg + r+a+ar +l    +l+lde +  ld  
  MMETSP1061-20121228|21080_1  88 LKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVHsNVRVGYLRQSAVSGSTKTVAEEARSEMAHIEEaKLDLEAKTkIVeDGDYSEDAlnDLAAAQehfetiggyqqeQLVDSVLKGlgFEPEDSDRlCSDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDSS 263
                  467888888888999999999999999999999999999988876258888888889999999999998765555554233343222021111222211112233330010000000003334433331133333334346789*************************9999965 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.035
    TIGR01192 345 anssqgvrdvsfeakagqtvaivgptgagkttlinllq 382
                  +n +  ++++ +++  g  + + gp gagk+tl+  l+
  MMETSP1061-20121228|21080_1 414 PNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALR 451
                  5777778999***********************98774 PP

  == domain 3    score: 14.3 bits;  conditional E-value: 4.3e-05
    TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvetearvkdaid 515
                  + lsgge+ r+a+    lk + +l+lde +  ldv     + +a+ 
  MMETSP1061-20121228|21080_1 530 KALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKALS 575
                  579********************************87766666655 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.2e-05    0.0019     768     858 ..      77     157 ..       6     193 .. 0.78
   2 ?    3.9   0.0     0.028       1.6     211     243 ..     231     263 ..     216     274 .. 0.71
   3 !    6.8   0.0    0.0039      0.23     774     828 ..     415     468 ..     379     478 .. 0.72
   4 ?    5.4   0.0      0.01       0.6     207     252 ..     529     574 ..     527     586 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.2e-05
    TIGR00956 768 evkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkldssFqRsiGYvqqqDlHletstvreaLr 858
                  +v i+ +   lL+e++  v+P +   ++G  GAGk tLl         G it+  r+ +g++l +s  R +GY +q  +  +t tv e  r
  MMETSP1061-20121228|21080_1  77 NVAISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLL---------GAITGTVRMDEGKALVHSNVR-VGYLRQSAVSGSTKTVAEEAR 157
                  5789999999****************************9.........556666678888888888665.8**************998655 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.028
    TIGR00956 211 sGGerkRvsiaevlvakakiqcwDnatrGLDsa 243
                  sGG + R+++a  l++k++++++D+ +  LDs+
  MMETSP1061-20121228|21080_1 231 SGGWQMRIALARLLLSKPSLLLLDEPSNHLDSS 263
                  666666666666666666666666666666665 PP

  == domain 3    score: 6.8 bits;  conditional E-value: 0.0039
    TIGR00956 774 ekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngr 828
                  ++  lL++++  +  G    L G  GAGk tLl +L + v   +i++g+r+ n r
  MMETSP1061-20121228|21080_1 415 NEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVP-EMIQSGERIENDR 468
                  55556666666666666666777777777777777777654.4666677777765 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.01
    TIGR00956 207 vRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkal 252
                  v+ +sGGe+ Rv+++   +  ++++++D+ +  LD      ++kal
  MMETSP1061-20121228|21080_1 529 VKALSGGEKARVALGMFALKASNLLMLDEPSNHLDVGCISGLAKAL 574
                  6789*******************************87766666665 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0      0.33        20     615     653 ..      80     118 ..      68     138 .. 0.79
   2 !    6.4   0.0    0.0077      0.46     470     551 ..     212     288 ..     175     299 .. 0.84
   3 !    8.0   0.0    0.0025      0.15     623     651 ..     420     448 ..     403     467 .. 0.77
   4 !   13.4   0.0   5.6e-05    0.0034     816     890 ..     519     590 ..     512     599 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.33
    TIGR00630 615 lkgakennlkdidvsiplglltvitGvsgsGkstLindi 653
                  +++  +  lk+i+ s+  ++   i G+ g+GkstL+  i
  MMETSP1061-20121228|21080_1  80 ISRGASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAI 118
                  555555668888888888888889999999999998655 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0077
    TIGR00630 470 fLvdvGLdYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeet 551
                  +L  +G++    +r  + +sGG + ri+la  + s+    l +lDePs  L    ++ L + + +      ++++v hD   
  MMETSP1061-20121228|21080_1 212 VLKGLGFEPEDSDRLCSDFSGGWQMRIALARLLLSKP--SLLLLDEPSNHLDSSAKDWLGKYIAN---YDGSVVLVSHDVSL 288
                  5666777778889999*****************9986..5889*****99998888887766654...45678888888665 PP

  == domain 3    score: 8.0 bits;  conditional E-value: 0.0025
    TIGR00630 623 lkdidvsiplglltvitGvsgsGkstLin 651
                  l++i+++ip g+  ++ G+ g+GkstL++
  MMETSP1061-20121228|21080_1 420 LQNINLKIPRGMKLLLRGPNGAGKSTLLK 448
                  67777777777777777777777777775 PP

  == domain 4    score: 13.4 bits;  conditional E-value: 5.6e-05
    TIGR00630 816 GLgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehn 890
                  GLg  k  +++++LsGGe  rv L +   k s    l +lDeP+  L +  i  L + l     k  +vvvi h+
  MMETSP1061-20121228|21080_1 519 GLGGEKPLRKVKALSGGEKARVALGMFALKAS---NLLMLDEPSNHLDVGCISGLAKALSGWGGKDGAVVVISHD 590
                  55555555677889999999999988877654...5888999999999999999999999998888889999886 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0       0.1         6      28     120 ..     103     194 ..     100     200 .. 0.60
   2 ?   -0.8   0.3      0.81        48     345     399 ..     315     368 ..     288     374 .. 0.50
   3 ?    0.6   0.0      0.29        17      29      43 ..     436     450 ..     426     451 .. 0.85
   4 !   15.7   0.0   8.5e-06    0.0005    1067    1139 ..     523     592 ..     521     603 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.1
    TIGR02169  28 isGpNGSGKSNiiDallFaLGlssskalRAe..rLsdLiskg..akeaksakeaeVtvtfknddkklpdelevsrrlkvtkegkySyYylNgksvrl 120
                  i+G NG+GKS ++ a+     +   kal  +  r+ +L  +   +  ++ a+ea+ ++   +++     +l  + + k+ ++g yS  +lN+ ++ +
  MMETSP1061-20121228|21080_1 103 IVGINGAGKSTLLGAITGTVRMDEGKALVHSnvRVGYLRQSAvsGSTKTVAEEARSEMAHIEEA-----KLDLEAKTKIVEDGDYSEDALNDLAAAQ 194
                  8999******999999766665555555433113344433332222223344444444444333.....4677788888888888888888876665 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.81
    TIGR02169 345 eieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklk 399
                   +ee++ + ++ ++e++ + ee + l+a +++  ++a +++ ++ ++ + lek+k
  MMETSP1061-20121228|21080_1 315 YLEEKEFRAASAQAEYERNLEEAARLQAFVDKFGASATKAKSAQ-SRVKMLEKMK 368
                  34444444444444444444444444444444333333332222.2223333333 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.29
    TIGR02169  29 sGpNGSGKSNiiDal 43 
                   GpNG+GKS ++ al
  MMETSP1061-20121228|21080_1 436 RGPNGAGKSTLLKAL 450
                  6********988765 PP

  == domain 4    score: 15.7 bits;  conditional E-value: 8.5e-06
    TIGR02169 1067 dKavqrleamSGGEKsltALsfifAiQrykPspfYafDEvDmfLDgvNvervaklikeka.keaQfivvslrkp 1139
                   +K++++++a+SGGEK+ +AL + fA+   k s + ++DE   +LD   +  +ak  +  + k+   +v+s+ + 
  MMETSP1061-20121228|21080_1  523 EKPLRKVKALSGGEKARVALGM-FAL---KASNLLMLDEPSNHLDVGCISGLAKALSGWGgKDGAVVVISHDRK 592 
                   8*******************96.886...779*************99999999998875415677778887655 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.7   0.0     0.002      0.12     357     401 ..      88     132 ..      69     142 .. 0.83
   2 ?   -1.9   0.0       3.3     2e+02     468     502 ..     228     262 ..     222     270 .. 0.85
   3 !   10.9   0.0   0.00042     0.025     356     397 ..     419     462 ..     404     598 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.002
    TIGR01194 357 lGpidlriasGelvyivGenGcGkstliklllGlyipqeGellld 401
                  l  i+  ++  e   ivG nG Gkstl+  + G  +  eG+ l++
  MMETSP1061-20121228|21080_1  88 LKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRMDEGKALVH 132
                  566777777788888*************************99986 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 3.3
    TIGR01194 468 tdlstGqrkrlalvnayleerpvllldewaadqdp 502
                  +d+s G + r+al    l +  +lllde +   d 
  MMETSP1061-20121228|21080_1 228 SDFSGGWQMRIALARLLLSKPSLLLLDEPSNHLDS 262
                  68999**********999999999***98776665 PP

  == domain 3    score: 10.9 bits;  conditional E-value: 0.00042
    TIGR01194 356 alGpidlriasGelvyivGenGcGkstliklllGly..ipqeGe 397
                   l  i+l+i +G  + + G nG Gkstl+k l G    + q+Ge
  MMETSP1061-20121228|21080_1 419 LLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRGNVpeMIQSGE 462
                  5778***************************9996422345555 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   0.00058     0.035     162     207 ..      79     127 ..      65     141 .. 0.78
   2 !    9.0   0.0    0.0025      0.15     175     204 ..     427     456 ..     400     465 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00058
    TIGR03819 162 aiapevaelleai...vaarlallvsGgtGsGkttLLsalLalvaedeR 207
                  ai+++++ ll++i   v+ +    ++G  G+Gk tLL+a+ ++v+ de 
  MMETSP1061-20121228|21080_1  79 AISRGASPLLKEInwsVQPKERWGIVGINGAGKSTLLGAITGTVRMDEG 127
                  455666666666644477888999********************99885 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.0025
    TIGR03819 175 vaarlallvsGgtGsGkttLLsalLalvae 204
                  + + ++ll+ G  G+Gk tLL al ++v+e
  MMETSP1061-20121228|21080_1 427 IPRGMKLLLRGPNGAGKSTLLKALRGNVPE 456
                  4566889*****************999875 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.1   0.00039     0.023      20      60 ..      84     124 ..      69     164 .. 0.86
   2 !    7.5   0.0    0.0073      0.43      18      56 ..     414     452 ..     402     465 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00039
    TIGR00750  20 akellkrilpktGrahvvGltGvPGaGkstlveklieelrr 60 
                  a  llk+i  +    ++ G+ G+ GaGkstl+ +++ ++r 
  MMETSP1061-20121228|21080_1  84 ASPLLKEINWSVQPKERWGIVGINGAGKSTLLGAITGTVRM 124
                  667888888888888999****************9988764 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0073
    TIGR00750  18 peakellkrilpktGrahvvGltGvPGaGkstlveklie 56 
                  p+   ll++i  k  r   + l G  GaGkstl+++l  
  MMETSP1061-20121228|21080_1 414 PNEAPLLQNINLKIPRGMKLLLRGPNGAGKSTLLKALRG 452
                  556678999999999999999**************9964 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0      0.14         8    1212    1240 ..     236     264 ..     233     274 .. 0.90
   2 ?    3.3   0.0     0.047       2.8      32      49 ..     434     451 ..     427     462 .. 0.90
   3 !   10.1   0.0    0.0004     0.024    1213    1278 ..     539     599 ..     537     605 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.14
    TIGR00606 1212 irlalaevfclnCgiialdePttnldrek 1240
                   +r+ala  +  + +++ ldeP   ld + 
  MMETSP1061-20121228|21080_1  236 MRIALARLLLSKPSLLLLDEPSNHLDSSA 264 
                   69************************875 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.047
    TIGR00606  32 llvGPnGaGkttiiealk 49 
                  ll GPnGaGk t++ al+
  MMETSP1061-20121228|21080_1 434 LLRGPNGAGKSTLLKALR 451
                  789***********9996 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 0.0004
    TIGR00606 1213 rlalaevfcln.CgiialdePttnldrekieslaialveiiksrsrqrdlqllvithdedlvellgr 1278
                   r+al  +f+l+   ++ ldeP   ld   i +la+al         ++d  ++vi hd ++ e++g 
  MMETSP1061-20121228|21080_1  539 RVALG-MFALKaSNLLMLDEPSNHLDVGCISGLAKALSG-----WGGKDGAVVVISHDRKFCEKVGF 599 
                   66665.45555156999********************65.....5899***************9986 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0     0.003      0.18       7      32 ..     102     126 ..      98     146 .. 0.81
   2 !    8.2   0.0    0.0069      0.41       4      27 ..     431     454 ..     429     477 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.003
    TIGR00231   7 vivGhvdvGKstLlnsllknkisite 32 
                  +ivG  ++GKstLl  ++++  + +e
  MMETSP1061-20121228|21080_1 102 GIVGINGAGKSTLLGAITGTV-RMDE 126
                  8****************9987.5555 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0069
    TIGR00231   4 ikivivGhvdvGKstLlnsllknk 27 
                  +k+++ G  ++GKstLl+ l++n 
  MMETSP1061-20121228|21080_1 431 MKLLLRGPNGAGKSTLLKALRGNV 454
                  78999999************9985 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0019      0.11      32      48 ..     103     119 ..      89     123 .. 0.89
   2 ?    5.0   0.0     0.016      0.97      31      46 ..     434     449 ..     426     451 .. 0.87
   3 ?   -2.3   0.0       2.7   1.6e+02     947     972 ..     527     553 ..     524     558 .. 0.81

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0019
    TIGR00618  32 icGktGaGKtsLldAIt 48 
                  i G +GaGK++Ll AIt
  MMETSP1061-20121228|21080_1 103 IVGINGAGKSTLLGAIT 119
                  89**************9 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.016
    TIGR00618  31 vicGktGaGKtsLldA 46 
                  +  G++GaGK++Ll A
  MMETSP1061-20121228|21080_1 434 LLRGPNGAGKSTLLKA 449
                  568***********99 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 2.7
    TIGR00618 947 RpvetlSGGEtFlasls.laLaladll 972
                  R v+ lSGGE  ++ l  +aL  ++ll
  MMETSP1061-20121228|21080_1 527 RKVKALSGGEKARVALGmFALKASNLL 553
                  8999*******9999973577666665 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.018       1.1       5      37 ..     102     134 ..      99     172 .. 0.69
   2 ?    6.8   0.0     0.017         1       5      26 ..     434     455 ..     430     464 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.018
    TIGR02322   5 lvvGpsGaGKDtlldlararladeprvlfarRv 37 
                   +vG  GaGK tll++   +++ ++   +++  
  MMETSP1061-20121228|21080_1 102 GIVGINGAGKSTLLGAITGTVRMDEGKALVHSN 134
                  59**************99998887776666643 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.017
    TIGR02322   5 lvvGpsGaGKDtlldlararla 26 
                  l+ Gp GaGK tll+++r ++ 
  MMETSP1061-20121228|21080_1 434 LLRGPNGAGKSTLLKALRGNVP 455
                  677************9997765 PP

>> TIGR00455  apsK: adenylylsulfate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0      0.33        20      23      47 ..     103     127 ..      99     173 .. 0.74
   2 ?    7.4   0.0     0.012      0.69      17      56 ..     429     468 ..     420     490 .. 0.82

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.33
    TIGR00455  23 ltGlsgsGkstianalekkLeekgl 47 
                  + G+ g+Gkst+  a+   ++    
  MMETSP1061-20121228|21080_1 103 IVGINGAGKSTLLGAITGTVRMDEG 127
                  6899***********9887765544 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.012
    TIGR00455  17 ksvvlWltGlsgsGkstianalekkLeekglrvevLDGDn 56 
                  +++ l l G+ g+Gkst+ +al  ++ e+  + e+++ D 
  MMETSP1061-20121228|21080_1 429 RGMKLLLRGPNGAGKSTLLKALRGNVPEMIQSGERIENDR 468
                  788999****************998888777777776665 PP

>> TIGR00368  TIGR00368: Mg chelatase-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0     0.001     0.062     205     248 ..     424     468 ..     420     479 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.001
    TIGR00368 205 eiaaaGghnllllGPPGsGktllakrlqgllPel.tneealetar 248
                  ++ +  g  lll GP G+Gk  l k l+g +Pe+ +  e +e  r
  MMETSP1061-20121228|21080_1 424 NLKIPRGMKLLLRGPNGAGKSTLLKALRGNVPEMiQSGERIENDR 468
                  556667889************************835568888776 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0    0.0093      0.55       6      48 ..      73     118 ..      71     121 .. 0.71
   2 ?   -2.6   0.6       4.8   2.8e+02     471     513 ..     323     365 ..     306     370 .. 0.56
   3 ?    9.1   0.5    0.0014     0.082      18      49 ..     421     451 ..     419     453 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0093
    TIGR03185   6 leLenlGayrgr....qevdLsvsse.kpiiLlgglNGaGKTTlLdai 48 
                  l Len+ + rg     +e++ sv+++ +    + g+NGaGK TlL ai
  MMETSP1061-20121228|21080_1  73 LRLENVAISRGAspllKEINWSVQPKeR--WGIVGINGAGKSTLLGAI 118
                  5667777777766666677777766532..23569***********98 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 4.8
    TIGR03185 471 qkedaeelervikladkvkktleeFrekllerklqkleeeilk 513
                      ++e er ++ a++++  +++F    ++ k+ +  +++l+
  MMETSP1061-20121228|21080_1 323 AASAQAEYERNLEEAARLQAFVDKFGASATKAKSAQSRVKMLE 365
                  3333445566666666666666666666666665555444444 PP

  == domain 3    score: 9.1 bits;  conditional E-value: 0.0014
    TIGR03185  18 qevdLsvssekpiiLlgglNGaGKTTlLdaiq 49 
                  q+++L++    + +Ll g NGaGK TlL+a++
  MMETSP1061-20121228|21080_1 421 QNINLKIPRGMK-LLLRGPNGAGKSTLLKALR 451
                  677777777766.58899************97 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.0      0.25        15      26      43 ..     101     118 ..      96     119 .. 0.87
   2 ?   -3.9   0.4       7.1   4.2e+02     890     899 ..     162     171 ..     141     206 .. 0.36
   3 ?    2.9   0.3     0.061       3.6     448     503 ..     317     371 ..     305     387 .. 0.64
   4 ?    1.6   0.0      0.16       9.4      30      44 ..     437     451 ..     422     452 .. 0.90
   5 ?    8.4   0.1    0.0013     0.079    1085    1121 ..     525     557 ..     522     565 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.25
    TIGR02168  26 tgiVGPNGcGKSNivDAi 43 
                   giVG NG GKS  + Ai
  MMETSP1061-20121228|21080_1 101 WGIVGINGAGKSTLLGAI 118
                  59**********998887 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 7.1
    TIGR02168 890 alaelreele 899
                  +++e++ +le
  MMETSP1061-20121228|21080_1 162 HIEEAKLDLE 171
                  1111111111 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.061
    TIGR02168 448 eeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenl 503
                  ee++  +++++++ e++lee+ ++l++   ++ +   + +++q+r+++le+++++ 
  MMETSP1061-20121228|21080_1 317 EEKEFRAASAQAEYERNLEEA-ARLQAFVDKFGASATKAKSAQSRVKMLEKMKREG 371
                  233333344444444444443.4455555566667778889999999999999876 PP

  == domain 4    score: 1.6 bits;  conditional E-value: 0.16
    TIGR02168  30 GPNGcGKSNivDAir 44 
                  GPNG GKS  + A+r
  MMETSP1061-20121228|21080_1 437 GPNGAGKSTLLKALR 451
                  9*******9999998 PP

  == domain 5    score: 8.4 bits;  conditional E-value: 0.0013
    TIGR02168 1085 klqnlslLSGGEKALtAlaLlFAifkvkPaPfciLDE 1121
                    l++++ LSGGEKA +Al     +f +k++ + +LDE
  MMETSP1061-20121228|21080_1  525 PLRKVKALSGGEKARVAL----GMFALKASNLLMLDE 557 
                   56899************8....679999999999999 PP

>> TIGR02680  TIGR02680: TIGR02680 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   1.7    0.0012     0.073      26      44 ..     432     450 ..     429     454 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0012
    TIGR02680  26 rLLLRGnNGaGKSkvLell 44 
                  +LLLRG NGaGKS  L+ l
  MMETSP1061-20121228|21080_1 432 KLLLRGPNGAGKSTLLKAL 450
                  8************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      240  (0.058508); expected 82.0 (0.02)
Passed Vit filter:                       105  (0.0255973); expected 4.1 (0.001)
Passed Fwd filter:                        69  (0.0168211); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              69  [number of targets reported over threshold]
# CPU time: 1.34u 0.18s 00:00:01.52 Elapsed: 00:00:01.28
# Mc/sec: 656.85
//
Query:       MMETSP1061-20121228|21134_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-25   86.3   0.0    2.6e-15   54.1   0.0    2.3  2  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   1.5e-11   6.1e-08       2     122 ..      64     202 ..      63     208 .. 0.74
   2 !   54.1   0.0   6.4e-19   2.6e-15     126     305 ..     230     408 ..     224     425 .. 0.88

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 1.5e-11
    TIGR01293   2 kyrnl.gksglrvsclglgtwvvfgsqisdeqaedllklayes.ginlfdiaevy.......aagkaetelgkilkkkgwrrssyvittki........fw.ggka...eeerglsrkhiieglkaslerlqleyvdivlan 122
                   y  l g s l vs + +gt +++g q s e+  +ll  a+++ gin++d+ae+y       + g +++ + + lkk+  +rs ++++tk+        +   g++   +e   l+r+ i++++  sl+rl  +y+d++ ++
  MMETSP1061-20121228|21134_1  64 DYVKLgGGSDLVVSKVCMGT-MTYGVQNSLEEGVALLDKAFDEyGINFLDTAEIYpvptsaeTQGDTDRFVCEFLKKR--NRSDVILATKVagrspmltYLpRGENsdpDEAADLTRQQILDSVDESLKRLGTDYIDLLQLH 202
                  5666625799**********.58*****************9754**********933332222355666677788776..69999*****944444333222233311145678***********************98766 PP

  == domain 2    score: 54.1 bits;  conditional E-value: 6.4e-19
    TIGR01293 126 psspmeevvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiv..eqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvdskyddklpkaskatlkgyqwlkekvrseegrrqqarlkdlaalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqvll 305
                  p   ++e + a+  +i+ g   y+g s  +   i    + a  f  + p +   q  y l  r+  e    e   +  v ++ +spla +  ++ky ++l + s+a l  +     +       ++ a ++    lae+   t++q+a+aw+ ++e v s ++ga++ eql e+l++ +v+l
  MMETSP1061-20121228|21134_1 230 PPVELKEQLSALKELIDSGKVRYFGVSNETPYGICAMAALADHFPELYPRCvsIQNSYSLVVRKDYEAGCAEACYHNDVSLLPYSPLAGGTLSGKYRKELSPDSTARLTKFPGYMARYLE---SHNEAAVNAYCELAERHNLTPSQFALAWCYQNELVASTIIGATTMEQLEENLKAYDVRL 408
                  5566789999************************999999*9998887755226999***************99999***********************99999999988766555443...467889999********************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1743.86
//
Query:       MMETSP1061-20121228|21138_1  [L=449]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-53  177.7   0.0    8.9e-53  177.4   0.0    1.0  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
      9e-45  151.2   0.0    1.1e-44  150.8   0.0    1.0  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    8.5e-39  131.3   0.0      1e-38  131.0   0.0    1.1  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    2.2e-37  126.7   0.0    2.6e-37  126.4   0.0    1.0  1  TIGR03537 DapC: succinyldiaminopimelate transaminase
    4.1e-35  119.2   0.0    4.8e-35  119.0   0.0    1.1  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    9.5e-35  117.9   0.0    1.2e-34  117.6   0.0    1.1  1  TIGR01141 hisC: histidinol-phosphate transaminase
    2.1e-33  113.5   0.0    2.8e-33  113.1   0.0    1.1  1  TIGR03947 viomycin_VioD: capreomycidine synthase
    1.4e-25   87.9   0.1    2.5e-25   87.1   0.0    1.4  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    1.5e-24   84.4   0.0    2.3e-24   83.9   0.0    1.2  1  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    1.7e-24   84.4   0.0    3.1e-24   83.5   0.0    1.4  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
    7.1e-10   35.7   0.0    1.4e-09   34.7   0.0    1.4  1  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase
      0.007   13.1   0.0      0.012   12.4   0.0    1.3  1  TIGR04181 NHT_00031: aminotransferase, LLPSF_NHT_00031 family


Domain annotation for each model (and alignments):
>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.4   0.0   2.6e-55   8.9e-53       8     382 ..      65     443 ..      60     444 .. 0.92

  Alignments for each domain:
  == domain 1    score: 177.4 bits;  conditional E-value: 2.6e-55
    TIGR03540   8 klPPylfaeidklkaekkakGvdvidlgiGdPdlptpkeivealkkaaekpenhryPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahlplafvnpGdivlvpdPgyPvykistllaggepyelPlkeendflPdldaipedvlk..kakilflnyPnnPtsavadkeffkevvefakey.niivvhdaayseivfdeykalsflevdgakdvaielhslsktynmtGWrigfavGnkeliaalgkvksnvdsGvfqaiqeaaiaalee.eeevvkelrkvykkrrdllvealkki.Gldvk.kpkatfylWvkvPeGy..tsaefakklleeagvvvtpGvgfGesGeGyirisltvseerlkeaverlkk 382
                  ++ P   +ei  l +e +a G  v +l++G+Pd   pk ++ea + a+++ e  ry + +G + +r+a+a+ +kkr+gve +p +e++   G+k+ +   +la   +Gd v+vp P +P y     l+g++p  +  k e+++l   +++ + + +    k++ l  P+nPt+ v + e ++ + ++ ++   ++v+ d+ y  +v+++ + ++f  v+g    ++ ++ +sk+++mtG r+g+ +  + l +a+++++s + s + +  q a++aal+  +ee ++ ++++ +++rd ++ +l ki G+++   p+++fy+   v   +  + ++++ +ll+   + ++pG +fG+ G   +r+s ++s e+l  a+++lk+
  MMETSP1061-20121228|21138_1  65 SVKPSKTVEIFSLVKEMEAAGETVTSLCVGEPDFLPPKAVLEATIAAIQSGE-TRYTAVTGTADLRNAIAADLKKRKGVEYNPANEIVVGNGAKQCVYQGVLATCGEGDKVIVPAPYWPSYPEMVSLVGATPIVVEAKAEDGYLLSPETLRATLEEhpEVKLIILCNPSNPTGGVYHLEKLQAIADVLRDFpRVMVLADEIYERLVYEG-ECPAFAGVEGMFSRTMTVNGFSKSHAMTGMRLGYVAAPQPLARAITTIQSQLTSCAGSLSQAAGVAALTLvSEEEMQANVEIMREKRDYVLGELAKIpGVKMDiPPNGAFYVLPDVSGYFdgDDTKLCLELLKSKKMAIVPGSSFGAPG--TVRLSYATSIEELGTAMKKLKE 443
                  56677788999999*****************************999998766.69*****************************************************************************************777777666554116899***************************97479999************.899*****************************************************************96267889999****************9989999735799*****9996544225678999*****************975..79*****************997 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0   3.2e-47   1.1e-44      25     402 ..      80     448 ..      60     449 .] 0.87

  Alignments for each domain:
  == domain 1    score: 150.8 bits;  conditional E-value: 3.2e-47
    TIGR01265  25 kkpeeekpviklslGdPsvfgnlrtaeeaeeavadavrsgkfngYapsvGvlaareavaeylskeleakle.addvvltsGcsqaielviealanaganiLvPrPgfplYetlakalglevrkydllpekdweidldelealaDek..tvalvvinPsnPcGsvfsrdHlekvvevaekl.klliiaDEvYdklvfgd..atfvplaklaskvPvlslggiskrwlvPGWrlGWlivvdpkgiledtvlqglkkllqlildpatlvqgAlpdilektpkeffekkikvlkenaelvyeelkeipgltcvk.PegamyllvklelelleeikdDvdFceklvkEesvillPgsalelenylRitltveksvleealeRikeFcerh 402
                  +      +v  l +G+P     + +++++ ea  +a++sg+   Y++ +G+   r+a+a  l+k+   + + a+++v+  G++q +   + a +  g++++vP P +p Y  + + +g      +  +e+++ +  ++l+a  +e+   +++++ nPsnP+G+v++ + l+ +++v + + +++++aDE+Y++lv+++    f  +         ++++g sk+    G rlG+++  +p     +    ++++ l+    + +l q+A  ++l+   +e ++  +++++e  ++v  el++ipg+++   P+ga y+l +++   ++   dD++ c +l+k + + ++Pgs +++++ +R++ +++ + l  a++++keF   +
  MMETSP1061-20121228|21138_1  80 EMEAAGETVTSLCVGEP----DFLPPKAVLEATIAAIQSGET-RYTAVTGTADLRNAIAADLKKRKGVEYNpANEIVVGNGAKQCVYQGVLATCGEGDKVIVPAPYWPSYPEMVSLVGATPIVVEAKAEDGYLLSPETLRATLEEHpeVKLIILCNPSNPTGGVYHLEKLQAIADVLRDFpRVMVLADEIYERLVYEGecPAFAGVE--GMFSRTMTVNGFSKSHAMTGMRLGYVAAPQPLARAIT----TIQSQLTS--CAGSLSQAAGVAALTLVSEEEMQANVEIMREKRDYVLGELAKIPGVKMDIpPNGAFYVLPDVSGY-FD--GDDTKLCLELLKSKKMAIVPGSSFGAPGTVRLSYATSIEELGTAMKKLKEFLAEN 448
                  33334478999999998....5888999************96.7******************9888777763799******************************************************************99986226889999*********************999758****************333455554..44455799******************99888766655....44443333..34568899999999999*******************************999**********9865.55..69*************************************************8765 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.0   0.0     3e-41     1e-38      32     401 ..      87     447 ..      62     449 .] 0.87

  Alignments for each domain:
  == domain 1    score: 131.0 bits;  conditional E-value: 3e-41
    TIGR01264  32 kviklsiGdPtvdgnlktseeavkalkesvdsgkynGyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaiealadaGenvlvPrPGfplyetlakaldievklynlladedweidlkeleslidd..ktkalivnnPsnPcGsvfsrkhleellalaerl.klpiladeiyedlvfkg..atflalaslssevPilslgGlakrllvPGWrlGWliihdrkgvlrdvkdGlkklsqrilGpntlvqGalkeilrktPqeyfdgvvsvlesnadlvyealaevvGlkp.vkPkGamyllvkielekfkelksdvefveklveeesvfvlPgsifelPgylrvvltvpkavleeavsrikefcer 401
                  +v +l +G+P     +++++ +++a   +++sg+   y++  G+   r+aia   ++++  +   a+++v+  G+ +++   + a + +G++v+vP P +p y  ++  ++ +  + +  a++ + +  + l++  ++  + k++i+ nPsnP+G+v++ + l+ +  + +   ++++ladeiye lv++g    f  +  + s+   ++++G +k + + G rlG++   ++  +    +  ++  sq    + +l q a   +l+   +e ++  v++++++ d+v   la+++G+k  + P+Ga y+l +++   f+   +d++++ +l++ +++ ++Pgs f +Pg +r+  +++ + l  a++++kef   
  MMETSP1061-20121228|21138_1  87 TVTSLCVGEPD----FLPPKAVLEATIAAIQSGET-RYTAVTGTADLRNAIAADLKKRKGVEYNPANEIVVGNGAKQCVYQGVLATCGEGDKVIVPAPYWPSYPEMVSLVGATPIVVEAKAEDGYLLSPETLRATLEEhpEVKLIILCNPSNPTGGVYHLEKLQAIADVLRDFpRVMVLADEIYERLVYEGecPAFAGVEGMFSR--TMTVNGFSKSHAMTGMRLGYVAAPQPLARA---ITTIQ--SQLTSCAGSLSQAAGVAALTLVSEEEMQANVEIMREKRDYVLGELAKIPGVKMdIPPNGAFYVLPDVSG-YFD--GDDTKLCLELLKSKKMAIVPGSSFGAPGTVRLSYATSIEELGTAMKKLKEFLAE 447
                  56777778774....5678889999999****995.69******************877777888*******************************************9999999999**************998888335799**************9999999998877654899**************76678888888776..5899****************9876664433...33333..344445567889999999*********************************964789**********95.566..69*************************************************765 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.4   0.0   7.5e-40   2.6e-37       6     346 ..      92     440 ..      87     444 .. 0.88

  Alignments for each domain:
  == domain 1    score: 126.4 bits;  conditional E-value: 7.5e-40
    TIGR03537   6 GtGdpkeptddfirkalldavpev.sqypsvlGekalreaiagylerrfgvkldpdaevlpsaGskeaifhlplafldpeeerkkviygtpgypvyerGalfaggealkvklkkedgflleldaveeailr..etkivwinyphnptGaeapasylkevaelarey.giilasdecyae.iyseekpa.svlevglenvlafhslskrsGmtGyrsgflaGdeelvsalrklrasvGvaspefvqaaataaws..ddahvaerrkifkrkrdlfleflakk.Glealas.datfylwvkvpegidaks..yalrlle.eGivvapGeafgageeeyvrvalvptleeceeairl 346
                   +G+p    ++ + +a ++a+ +  ++y +v+G+++lr+aia  l++r gv+ +p+ e++   G+k++++   la  +   e  kvi++ p +p y       g+ ++ v+ k+edg+ll+++ +  ++ +  e k++ +  p nptG     + l+ +a++ r++  +++++de y   +y++e pa + +e    +++++   sk   mtG r g++a  + l +a+  +++++  +  ++ qaa  aa     ++ ++   +i+++krd  l  lak  G++++ + + +fy+   v +++d+++   +l+ll+ + + + pG++fga   + vr++   ++ee   a+++
  MMETSP1061-20121228|21138_1  92 CVGEPDFLPPKAVLEATIAAIQSGeTRYTAVTGTADLRNAIAADLKKRKGVEYNPANEIVVGNGAKQCVYQGVLATCG---EGDKVIVPAPYWPSYPEMVSLVGATPIVVEAKAEDGYLLSPETLRATLEEhpEVKLIILCNPSNPTGGVYHLEKLQAIADVLRDFpRVMVLADEIYERlVYEGECPAfAGVEGMFSRTMTVNGFSKSHAMTGMRLGYVAAPQPLARAITTIQSQLTSCAGSLSQAAGVAALTlvSEEEMQANVEIMREKRDYVLGELAKIpGVKMDIPpNGAFYVLPDVSGYFDGDDtkLCLELLKsKKMAIVPGSSFGAP--GTVRLSYATSIEELGTAMKK 440
                  578888888999999*****9875279***********************************************9999...6678****************************************99876622567788899***********************9458899*****9836999988725589999***************************************************99997533789999999***********888885499998651679***9999999987651156778862578999******98..88999999999999888875 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.0   0.0   1.4e-37   4.8e-35       5     394 ..      63     444 ..      59     445 .. 0.85

  Alignments for each domain:
  == domain 1    score: 119.0 bits;  conditional E-value: 1.4e-37
    TIGR03538   5 lerlkpyPfeklaellkdvtppadleeialsiGePkhatPafvlealvenle.elskyPttkGlpelreaiaeWlerrfelpagvdperqvlPvnGtrealfafvqavidrae.kalvvlPnPfyqiyeGaallagaepyflnctaengfkpdfdavpeev..WkrvqllfvcsPgnPtGavlsleelkklleladkyd.fiiasdecyselyldeaeaPvGlleaaaelGrddfkrllvfhslskrsnvPGlrsGfvaGdaellkeflryrtyhGcampiavqlasiaaWe..dekhvrenralyrekfaavleilgavldlel...PdasfylWlkv...pdgddeafaralyeeenvkvlpGrylsreaegvnPGegrvrlalvaeleecveaaerikkl 394
                  ++++kp     + +l+k++ ++ +    +l +GeP   +P+ vlea ++ ++ + ++y +++G+++lr+aia+ l++r  ++   +p+++++  nG++++++   q v++++    +v++P P++  y     l ga+p  ++++ae+g+    +++ +++    +v+l+ +c P nPtG v +le+l+++ ++ + +   ++ +de y  l + e e P+     a   G   f r ++ + +sk   + G+r G+va    l ++    ++   ++     q+a +aa     e+ +++n +  rek + vl +l+++  +++   P+++fy+ + v   +dgdd++++ +l +++++ ++pG+ ++       PG   vrl+  +++ee   a++++k++
  MMETSP1061-20121228|21138_1  63 VASVKPSKTVEIFSLVKEMEAAGE-TVTSLCVGEPDFLPPKAVLEATIAAIQsGETRYTAVTGTADLRNAIAADLKKRKGVEY--NPANEIVVGNGAKQCVY---QGVLATCGeGDKVIVPAPYWPSYPEMVSLVGATPIVVEAKAEDGYLLSPETLRATLeeHPEVKLIILCNPSNPTGGVYHLEKLQAIADVLRDFPrVMVLADEIYERLVY-EGECPAF----AGVEG--MFSRTMTVNGFSKSHAMTGMRLGYVAAPQPLARAITTIQSQLTSCAGSLSQAAGVAALTlvSEEEMQANVEIMREKRDYVLGELAKIPGVKMdipPNGAFYVLPDVsgyFDGDDTKLCLELLKSKKMAIVPGSSFG------APG--TVRLSYATSIEELGTAMKKLKEF 444
                  555666666666778888765555.7889****************988877615789*********************99988..**************988...5666665426789*******************************987766666655116689**************************99998615678******9988.5555532....22234..699**********************************9999888888889****9997544899*********************997777555689********988889*********************8664......566..58999999999999999999887 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.6   0.0   3.5e-37   1.2e-34      22     346 ..      88     441 ..      70     444 .. 0.84

  Alignments for each domain:
  == domain 1    score: 117.6 bits;  conditional E-value: 3.5e-37
    TIGR01141  22 vvkLnsnEnPfgpsekvkealkeelk.klhrYpdpqa.lelkealakylg.......veeenillgnGsdelielliraflepgdavlvleptysmYevsakiagaevkevplked..gqedleavle..aakekvklvflasPnnPtGnllkreeiekvleev.e..dalVVvDeAYieFsee...asvlellaeypnlvvlrTlSKafgLAglRvGyaianaeiiealekvrapyn..vsslaleaavaalrdsd..kiektveevkkererlleelkklegle..vyeSkaNFvlikvke.....daeelleallekgiivRdlksaeglleeclRitvGtr.eenerlleal 346
                  v  L   E  f p+++v+ea+ ++++   +rY    + ++l++a+a+ l+         +++i++gnG+ + +   + a++ +gd+v+v+ p +  Y+ ++++ ga  + v++k++       e + +   ++ +vkl+ l++P+nPtG + + e+++++++      +++V+ De Y     e   + ++ +   ++  +++  +SK++++ g+R+Gy+ a + +++a+  +++       sl+++a+vaal+  +  +++++ve ++++r+++l el+k++g++  + +  a +vl +v+      d + +le l+ k++ +   +s+ g  ++ +R++  t+ ee    ++ l
  MMETSP1061-20121228|21138_1  88 VTSLCVGEPDFLPPKAVLEATIAAIQsGETRYTAVTGtADLRNAIAADLKkrkgveyNPANEIVVGNGAKQCVYQGVLATCGEGDKVIVPAPYWPSYPEMVSLVGATPIVVEAKAEdgYLLSPETLRAtlEEHPEVKLIILCNPSNPTGGVYHLEKLQAIADVLrDfpRVMVLADEIYERLVYEgecPAFAGVEGMFSRTMTVNGFSKSHAMTGMRLGYVAAPQPLARAITTIQSQLTscAGSLSQAAGVAALTLVSeeEMQANVEIMREKRDYVLGELAKIPGVKmdIPPNGAFYVLPDVSGyfdgdDTKLCLELLKSKKMAIVPGSSF-G-APGTVRLSYATSiEELGTAMKKL 441
                  5566667778889999*****9**997779**98775268******9999999988666789********************************************98888887776533333333333478889*******************999999999875679*********987776668888999999***********************************999877633679********99865545**************************98455667889****999999988888899999999999999999.7.49999999877634445555555 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.1   0.0   8.3e-36   2.8e-33      50     359 .]     122     445 ..     108     445 .. 0.88

  Alignments for each domain:
  == domain 1    score: 113.1 bits;  conditional E-value: 8.3e-36
    TIGR03947  50 slGgeklraaladrlag..G....daekvlvthGsseaiylvltallrPGdevvvvdpayhslselavalgakvrrwplaaerdfrpdlddlralvtdrt..rlvvvnfPhnPtGasvderelsellelaaesgav.llWdaafadlvyd..aeplpepsaaadrvisfgtlskafGlpGlrvGWcvaPkdllaelvrlrdyltlslsPlvellaevave.hadalieprlaearanrrrlldWaaahedvvrltvPeGGvaafprfagl..advtdlCerllarhgvlvvPGscfGaadrvrlGfggssaeleaGlerlsall 359
                    G++ lr+a+a+ l++  G    +a++++v  G+ + +y  + a    Gd+v+v  p + s  e+   +ga+     ++ae+++   ++ lra + + +  +l+++  P nPtG   + ++l+++ ++  +   v +l d+ +  lvy+   ++++ +     r+++++ +sk++ ++G+r+G++ aP+ l+ ++  ++ +lt     l +     a+   +++ ++  ++  r+ r+ +l   a+ ++v    +P+G    +p ++g   +d t+lC +ll+ +++ +vPGs fGa+ +vrl +++s +el + +++l ++l
  MMETSP1061-20121228|21138_1 122 VTGTADLRNAIAADLKKrkGveynPANEIVVGNGAKQCVYQGVLATCGEGDKVIVPAPYWPSYPEMVSLVGATPIVVEAKAEDGYLLSPETLRATLEEHPevKLIILCNPSNPTGGVYHLEKLQAIADVLRDFPRVmVLADEIYERLVYEgeCPAFAGVEGMFSRTMTVNGFSKSHAMTGMRLGYVAAPQPLARAITTIQSQLTSCAGSLSQAAGVAALTlVSEEEMQANVEIMREKRDYVLGELAKIPGVKMDIPPNGAFYVLPDVSGYfdGDDTKLCLELLKSKKMAIVPGSSFGAPGTVRLSYATSIEELGTAMKKLKEFL 445
                  6799*******98654312333337899*******************************************************************987653389************************99987655167899*******7325789999999******************************************999999887666655523456678889999***************887778999*9*******9862267799*****************************************999876 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   7.3e-28   2.5e-25      19     356 ..      84     441 ..      72     442 .. 0.82

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 7.3e-28
    TIGR03539  19 hpdGivdlsvGtPvdpvpalirealaeaad..apgyPqtaGteelreaivdalerrlgvkgldeeavlPviGtkelvallPtllGlgagdtvviPevayPtyevgarlagaeavaaddlteldp..............ekvkliwlnsPanPtGrvlsveelrkvvalarer.gvvvasdecylelgWegeavsvldpevcggdlegllavhslskrsnlagyragfvaGdealvaellevrkhaGlmvpaPvqaamvaaladdehvaeq..keryaarrellkaaleka.Gfriehs.eaglylWat.....rgedaretvdrlaelGilvaPGdfygeagkefvrvaltatderiaaaverl 356
                    + +  l vG P    p+++ ea  +a +  +  y  ++Gt +lr+ai++ l++r gv+   +++++   G+k+ v +   l   g+gd+v++P+  +P y    +l ga+++++++ +e +                +vkli l  P+nPtG v ++e+l+++ ++ r+   v+v +de y  l++ege ++       +g ++  ++v  +sk+  ++g r g+va  + l   +++++           qaa vaal+  ++++ q   e  +++r+ +   l+k  G +++   ++++y+         g+d++  ++ l ++ + + PG+ +g+ g   vr++ +++ e++ +a+++l
  MMETSP1061-20121228|21138_1  84 AGETVTSLCVGEPDFLPPKAVLEATIAAIQsgETRYTAVTGTADLRNAIAADLKKRKGVEYNPANEIVVGNGAKQCVYQ-GVLATCGEGDKVIVPAPYWPSYPEMVSLVGATPIVVEAKAEDGYllspetlratleehPEVKLIILCNPSNPTGGVYHLEKLQAIADVLRDFpRVMVLADEIYERLVYEGECPAFAG---VEGMFSRTMTVNGFSKSHAMTGMRLGYVAAPQPLARAITTIQSQLTSCAGSLSQAAGVAALTLVSEEEMQanVEIMREKRDYVLGELAKIpGVKMDIPpNGAFYVLPDvsgyfDGDDTKLCLELLKSKKMAIVPGSSFGAPG--TVRLSYATSIEELGTAMKKL 441
                  5567889999*997777777877776665411578*************************8888999988999999865.6777899*************************999887665332222234444444345799****************************97368899*************998754...57899999**********************************999999999999999999876665555511678999999999888875599999752677887643222336899********************99876..59999999999999999887 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   6.8e-27   2.3e-24      70     400 ..     118     443 ..      78     445 .. 0.81

  Alignments for each domain:
  == domain 1    score: 83.9 bits;  conditional E-value: 6.8e-27
    TIGR03542  70 GyGpeqGldllreaiaeeeykgr....idpeeifisdGakcdvar.llelfgsdktvavqdPvyPvyvdsavlaGragvldddgkykkivylpctkenefiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyaken.dslilfdaayeafisdpslPksiyeiegakecaieirsfsktlGftGvrlgytvvPkelkvedgeslkklWerllctkfnGaslivqraaeavlakeglqqikeaisyymenarilrkalea.aglkvyG.GenaPylWvklpegi..ssedffdkllkeaevvgtPGsGfGssGeGfvrlsalgkredivealerike 400
                   y + +G   lr+aia +  k +      ++ei + +Gak  v + +l   g+ ++v v  P +P y ++  l+G++ ++ + +     +  p    +++  +l e+++v++i+lC P nPtG v   e+l+++ d  ++    ++l d  ye  + + + P     +eg  + ++ ++ fsk+  +tG+rlgy+  P+ l  +    +      +++     a  + q+a+ a+l+ ++ ++++  ++  +e+ + +  +l++  g k+    + a y+   +      +++++   llk  +++++PGs fG+ G+  vrls  ++ e++ +a++++ke
  MMETSP1061-20121228|21138_1 118 RYTAVTGTADLRNAIAADLKKRKgveyNPANEIVVGNGAKQCVYQgVLATCGEGDKVIVPAPYWPSYPEMVSLVGATPIVVEAKAEDGYLLSP----ETLRATLEEHPEVKLIILCNPSNPTGGVYHLEKLQAIADVLRDFpRVMVLADEIYERLVYEGECPA-FAGVEGMFSRTMTVNGFSKSHAMTGMRLGYVAAPQPLARA----I----TTIQSQLTSCAGSLSQAAGVAALTLVSEEEMQANVEIMREKRDYVLGELAKiPGVKMDIpPNGAFYVLPDVSGYFdgDDTKLCLELLKSKKMAIVPGSSFGAPGT--VRLSYATSIEELGTAMKKLKE 443
                  488899**********999988886645589********97765439999**************************88887777655543332....346778999999****************************99972567899**************6.5689***9***************************99832....2....2233333344567889999999999999999999999999888777777662588875515668888888877652267889999****************9865..9*****************997 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.5   0.0   9.1e-27   3.1e-24      61     278 ..     144     383 ..     101     400 .. 0.81

  Alignments for each domain:
  == domain 1    score: 83.5 bits;  conditional E-value: 9.1e-27
    TIGR01140  61 ygldaesvlavnGaqeaiql..lprllapkrvlvlaptyseyaralraagaevvels.........dleelaael...eeadllvvvnPnNPtGrllekeellalaerlkargg.llvvDEAFidftpaeslaalaea...lpglvVlrSltKffglaGlRlGfvvAepallerlkealgpWs..vngpAqavgeaala..deawqkatrarlaaererlaallaalgllev.vggtalFl 278
                  y+ +a++++++nGa++ ++   l+++ +  +v v+ap +  y + ++  ga++  ++         ++e+l+a+l    e++l++++nP NPtG +++ e+l+a+a+ l++    +++ DE +  ++ + +  a a     +++ + +  + K +++ G+RlG+v+A++ l++++ + +   +   + ++qa+g aal+   e+  +a+ + ++++r+ +  +la+++++++ ++ +  F+
  MMETSP1061-20121228|21138_1 144 YN-PANEIVVGNGAKQCVYQgvLATCGEGDKVIVPAPYWPSYPEMVSLVGATPIVVEakaedgyllSPETLRATLeehPEVKLIILCNPSNPTGGVYHLEKLQAIADVLRDFPRvMVLADEIYERLVYEGECPAFAGVegmFSRTMTVNGFSKSHAMTGMRLGYVAAPQPLARAITTIQSQLTscAGSLSQAAGVAALTlvSEEEMQANVEIMREKRDYVLGELAKIPGVKMdIPPNGAFY 383
                  33.599*************8878888999999********************9999999*******555555555444899****************************9986515568******9988765555554456******************************9999998877652223355555555544334444556678889999999999999999877556666665 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0     4e-12   1.4e-09     185     324 ..     172     309 ..     163     319 .. 0.72

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 4e-12
    TIGR03801 185 DkialllPiftPyleipelerydlevvkikadeakedgkatwqytdkelek.L.kdpkikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvygtfv.....ddfrsllaelpantilvysfskyfgatGWrlgvial 324
                  Dk+ +  P +  y e+ +l      vv+ ka++           + + l   L + p++k +++ nPsnP++   + e+++ +a+++++  p +m+l+D++y   v     ++f  + + +   t++v  fsk   +tG rlg +a 
  MMETSP1061-20121228|21138_1 172 DKVIVPAPYWPSYPEMVSLVGATPIVVEAKAEDGYL-------LSPETLRAtLeEHPEVKLIILCNPSNPTGGVYHLEKLQAIADVLRD-FPRVMVLADEIYERLVyegecPAFAGVEG-MFSRTMTVNGFSKSHAMTGMRLGYVAA 309
                  555555555555555555555444444444444333.......33333322121469****************************9987.9**********999872222234555444.4568*******************9996 PP

>> TIGR04181  NHT_00031: aminotransferase, LLPSF_NHT_00031 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   3.4e-05     0.012      48     122 ..     149     224 ..     125     234 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.4e-05
    TIGR04181  48 avavvnGtaaLhlalkllgvkegdeVivpaltFvAtanaisylgaePvfvdvd.eetlgldpealeefleeeaekk 122
                   ++v nG+        l+   egd+Vivpa  +      +s +ga+P++v+ + e+ + l+pe+l+++lee+ e+k
  MMETSP1061-20121228|21138_1 149 EIVVGNGAKQCVYQGVLATCGEGDKVIVPAPYWPSYPEMVSLVGATPIVVEAKaEDGYLLSPETLRATLEEHPEVK 224
                  577888888888888899999******************************97256899************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (449 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.39
# Mc/sec: 1519.57
//
Query:       MMETSP1061-20121228|21172_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   11.9   0.0      0.021   11.7   0.0    1.0  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   5.1e-06     0.021     250     308 ..       9      64 ..       4      69 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 5.1e-06
    TIGR03364 250 aaalkaeleeeepellelgihllvsqeedGeliiGDsHeyeaaaepFddeevdelllae 308
                  ++a+++++++++ +  +++i+++v+q+++G++     H  + a++pF +ee  + +++ 
  MMETSP1061-20121228|21172_1   9 VQAIENSFSNNNNNNINNNIKIIVQQQSKGGVR---KHFDSPAPSPFRKEELANNIISA 64 
                  6899***************************95...79999999****99999888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|21170_1  [L=634]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.1   0.0        1.3    5.1   0.0    2.3  2  TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein


Domain annotation for each model (and alignments):
>> TIGR03303  OM_YaeT: outer membrane protein assembly complex, YaeT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.001       4.1     102     219 ..     118     146 ..      85     159 .. 0.63
   2 ?    5.1   0.0   0.00031       1.3     380     450 ..     276     349 ..     241     381 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.001
    TIGR03303 102 eaklekaekelkelYkseGkynakveakvkelprnrvdlefnikeGkkakIkkInfvGnkaFseseLkkvlelkessllswltkkdkyskqkleaDkeaLrsfYlnrGYldfkvestq 219
                                                                                                            +++++ +++L++ Y+ +GY+  +v+ ++
  MMETSP1061-20121228|21170_1 118 M-----------------------------------------------------------------------------------------DRVQELSRNLKRWYMRQGYILHSVTGAS 146
                  3.........................................................................................4455555666666666666666665444 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.00031
    TIGR03303 380 vgsedqvdvnvkVkEkptGslsfGvGygsss.gllfnasiserNflGtGkslslslnkskksqs..lslsltdp 450
                    ++  v ++v+  E p   l+ G+G +    +   ++++  rN++G G+s+++ + +++k +s  +++ + d 
  MMETSP1061-20121228|21170_1 276 PTTDGGVCLQVHAMEPPPRHLEYGIGKSVWTnSWEGEVDFDWRNVFGGGESVGMMVRRGTKDSSpsVRVRYADD 349
                  46777888888888888888999999887655888999********************9988761144555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (634 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 2789.37
//
Query:       MMETSP1061-20121228|21183_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2990.06
//
Query:       MMETSP1061-20121228|21215_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 377.97
//
Query:       MMETSP1061-20121228|21208_1  [L=500]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.1   0.0      0.039   11.3   0.0    1.2  1  TIGR03365 Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE


Domain annotation for each model (and alignments):
>> TIGR03365  Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   9.4e-06     0.039      90     122 ..     107     139 ..      91     145 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 9.4e-06
    TIGR03365  90 geliellkekgirvaletqGsvakdWlaeldel 122
                  + +i+ ++e+g+   le  Gs  +dWla+l++l
  MMETSP1061-20121228|21208_1 107 DYFIDYVQENGYSNVLECLGSNLRDWLANLNSL 139
                  4689*************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (500 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2275.67
//
Query:       MMETSP1061-20121228|21219_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 819.43
//
Query:       MMETSP1061-20121228|21223_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 455.96
//
Query:       MMETSP1061-20121228|21239_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 566.45
//
Query:       MMETSP1061-20121228|21248_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 482.05
//
Query:       MMETSP1061-20121228|21257_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 569.64
//
Query:       MMETSP1061-20121228|21251_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2009.17
//
Query:       MMETSP1061-20121228|21254_1  [L=1202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-44  149.2   0.0    5.4e-35  119.1   0.0    3.1  3  TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF


Domain annotation for each model (and alignments):
>> TIGR02110  PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.1   0.0   1.3e-38   5.4e-35      19     217 ..     173     377 ..     165     392 .. 0.88
   2 !   10.2   0.0   1.1e-05     0.047     259     344 ..     445     533 ..     437     547 .. 0.88
   3 !   15.9   0.0   2.2e-07    0.0009     637     695 ..     979    1038 ..     973    1040 .. 0.89

  Alignments for each domain:
  == domain 1    score: 119.1 bits;  conditional E-value: 1.3e-38
    TIGR02110  19 akraAAllRVaAGShdepsawPGLAHlLEHLlFlGterfqgderLmawvqrqGGqvNAsTlerttdfFFelpaea.........laaGleRLcemLarPlltvedqqrEreVleAEyialsadadarreaalldalsaahplrrFraGsrdslalenaalQqALrdFhrryYqAeqmqLwLqGPQsLeeLeeLAarfgaslaageela 217
                  ak  AA++ V+AG +d     PGLAH+ EH+lFlGt++++g+++  +++ ++GG  NA T    t+++F ++ +          l +Gl RL +   +P ++ +  +rE   ++ Ey+  +  ++ r+   l    + +hp+  F  G+ ++l+   + +Q+ L+ F+++yY+  +m+L   G  sL++L++  +   ++laa ++++
  MMETSP1061-20121228|21254_1 173 AKVEAASVHVQAGHFDD--TIPGLAHFHEHMLFLGTKKYPGEDEYEGFLSKHGGFCNAYTDMEDTNYYFSVTSQQvdkdetsegLKGGLDRLAQFFIHPTFDEDMVERELRAIDSEYRNGKTSDSWRNYQLLKSRSNQKHPFSNFGCGNYETLSSLGSPVQE-LKTFWETYYTTSNMRLAVVGCSSLDALQQTVEETFGELAASDQPP 377
                  56679********9996..68*************************************************986532222222228899*******************************99988888888888889999**************999999986.9***************************98887777777766554 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 1.1e-05
    TIGR02110 259 llkeflqdeaPggLlAeLrergLaeslaatllyqdarqalLalefeatsvsaaaaeqveelllewLgalkeqa..laelleeye.rLeq 344
                  +l ++++ e+Pg+L   L++rg   sl            l  + +++t     a ++v +l+++w+  +k+ a   +ell ey+  L+q
  MMETSP1061-20121228|21254_1 445 VLSHLIGHESPGSLHYVLNKRGYLTSLSSGAALDASDFSLFSVSLALTPKGMRAKDEVLDLVFQWISLIKNVAieQPELLSEYHdELQQ 533
                  7999********************************************9999999*****************98867777777523444 PP

  == domain 3    score: 15.9 bits;  conditional E-value: 2.2e-07
    TIGR02110  637 RlLaqlletaFyqRLRvelQlGYavfsrvrrvadrd.GLllavQSPdasaaellqhikaF 695 
                    l+++l  +  y  LR   QlGY v+  vr+ a+ + GL + vQS + s++ l + i+a+
  MMETSP1061-20121228|21254_1  979 DLIGHLAYSSAYNQLRTKEQLGYIVSVFVRKTAGSTwGLSVVVQSSSKSPRYLEERIEAW 1038
                   58899999999*********************99877**********9999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.12s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 3966.27
//
Query:       MMETSP1061-20121228|21280_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2375.80
//
Query:       MMETSP1061-20121228|21311_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 646.05
//
Query:       MMETSP1061-20121228|21341_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 637.95
//
Query:       MMETSP1061-20121228|21329_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 3019.91
//
Query:       MMETSP1061-20121228|21339_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   17.2  47.3    0.00021   16.9  32.8    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
    0.00019   17.1  48.1    0.00024   16.8  33.4    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
        1.1    5.6   5.0      0.088    9.2   0.3    1.5  2  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
        9.3    4.2  13.5        2.8    5.9   1.1    2.9  2  TIGR02044 CueR: Cu(I)-responsive transcriptional regulator


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9  32.8   2.1e-07   0.00021     652     927 ..      62     325 ..      48     336 .. 0.56

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.1e-07
    TIGR02169 652 kSGaitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeel..eele.aavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkakl 927
                  ++G + GG +++   +   +s +e++  l+e+l +   e  +l+++ +++++ + +++s++++++ k +++ ++ e+ +++e++ +e   e+e+k +  e+ ++  ++e+kele+  ++le+ l+   +++e+le++l++++  + e e         + ++++ e+e++l++l+  k +le+  +el+++ +++  +++  ++e e l ak+ee+ ++l  e++e ++v++L+ + k ++ er+++++ +r+l  ++++l+++ +  +k  + ++++ 
  MMETSP1061-20121228|21339_1  62 RGGGLFGGRKKS-ASKIYRESLEEQVVLLNEQLRQARTEVTTLRENAKKRQETIVSARSAMRASTGKDRTKVSREEERARKEKQMAEDRREKERK-RGQEQTVKRLEKEIKELEKMKADLERLLNTSAKKIEELEEQLRSQESLTAELE--------GSYQKKITELEQKLSDLQ--KSQLEKL-KELHQQKIDAAVKEALKAQEAEFL-AKMEETTQRLtiEHAEaMEVEKLR-SSKAVETERKKMRKLVRALALREKKLKLQSDPVEKSSEPTTTRT 325
                  678899999655.5566777888888889999999999999999999999999999999999998887776666655544444444444444433.23344455555566666666666666666666666666666555443222222........223334444555554444..3333332.223333333333322222222222.223333333300222202333443.34567777777777777777777777777776666655555444 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8  33.4   2.3e-07   0.00024     252     482 ..      76     307 ..      54     332 .. 0.56

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.3e-07
    TIGR02168 252 eeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqlee..rrerlkqeieelekkleeaeaelkelqeeleeleeeleele..eelerleealeeleeeleeaeqalqka 482
                  +  +e+le+++  l+e+l + r+e++ l+e++++ q+++ ++++++++ + + +   +r+e+  ++++++ e+++e+e+k   +e+ +++le+e++el++  ++le  l+++++++eele++l+++e    el+  +++   +l++  ++l++  ++le+l+e  +++   + +e+l+++  e+ a+++e+ ++l+ +++e  e+e   + +++e++ +++++ ++++  + +k+
  MMETSP1061-20121228|21339_1  76 KIYRESLEEQVVLLNEQLRQARTEVTTLRENAKKRQETIVSARSAMRASTGKDRTKVSREEERARKEKQMAEDRREKERK-RGQEQTVKRLEKEIKELEKMKADLERLLNTSAKKIEELEEQLRSQESLTAELEGSYQKKITELEQKLSDLQK--SQLEKLKElhQQKIDAAVKEALKAQEAEFLAKMEETTQRLTIEHAEAMEVEklRSSKAVETERKKMRKLVRALALREKKL 307
                  44456777777777777777777777777777777777777777777777666666666666666666666666555555.445566777777777777777777777777777777776666666666666655555444444444443322..22222222001122333444444455556666666665554433333333200333444444444444444333333332 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.3      0.78     8e+02      31      56 ..     104     128 ..      94     152 .. 0.47
   2 ?    9.2   0.3   8.5e-05     0.088       6      83 ..     208     289 ..     203     308 .. 0.79

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 0.78
    TIGR03216  31 aeagkeevdaavkaaraalkgewgkl 56 
                   e +k++ ++++ +ar+a++++ gk 
  MMETSP1061-20121228|21339_1 104 RENAKKR-QETIVSARSAMRASTGKD 128
                  4433333.233334444444444432 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 8.5e-05
    TIGR03216   6 dGafvesektfe.dispvdgkviaevaeagkeevdaavkaaraalkgew.gkl.svaeraellkkvadeier.rfdeflaae 83 
                  +G++ ++  ++e + s ++ +++ +++e  ++++daavk a +a+++e+  k+  +++r ++ ++ a e+e+ r  + +++e
  MMETSP1061-20121228|21339_1 208 EGSYQKKITELEqKLSDLQKSQLEKLKELHQQKIDAAVKEALKAQEAEFlAKMeETTQRLTIEHAEAMEVEKlRSSKAVETE 289
                  788886666654167899999**************************98445524678999999999999874666666665 PP

>> TIGR02044  CueR: Cu(I)-responsive transcriptional regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.2   1.7    0.0045       4.6      75     110 ..     149     184 ..     132     189 .. 0.79
   2 ?    5.9   1.1    0.0027       2.8      59     108 ..     186     233 ..     181     243 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0045
    TIGR02044  75 rksadvkartlekvaelerkiselqeikdqleelae 110
                  r+  + k+   + v+ le++i+el+++k  le+l +
  MMETSP1061-20121228|21339_1 149 RREKERKRGQEQTVKRLEKEIKELEKMKADLERLLN 184
                  4445556666678999***************99876 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0027
    TIGR02044  59 sleeikellslandrerksadvkartlekvaelerkiselqeikdqleel 108
                  s ++i+el + ++ +e  +a++    ++k++ele+k+s+lq+   qle+l
  MMETSP1061-20121228|21339_1 186 SAKKIEELEEQLRSQESLTAELEGSYQKKITELEQKLSDLQKS--QLEKL 233
                  6677888888888889999999999***************964..44433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       927  (0.225987); expected 82.0 (0.02)
Passed bias filter:                      191  (0.0465627); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.53u 0.15s 00:00:00.68 Elapsed: 00:00:00.42
# Mc/sec: 1059.06
//
Query:       MMETSP1061-20121228|21349_1  [L=959]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (959 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.28
# Mc/sec: 4520.63
//
Query:       MMETSP1061-20121228|21372_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 882.24
//
Query:       MMETSP1061-20121228|21373_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 2095.99
//
Query:       MMETSP1061-20121228|21419_1  [L=689]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-31  105.8   0.0    1.3e-30  104.5   0.0    1.7  1  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type
    5.8e-27   92.1   0.1    5.8e-27   92.1   0.0    1.9  2  TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type
  ------ inclusion threshold ------
       0.82    5.1   5.4        1.2    4.6   3.8    1.1  1  TIGR03897 lanti_2_LanM: type 2 lantibiotic biosynthesis protein LanM


Domain annotation for each model (and alignments):
>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.0   9.2e-34   1.3e-30      28     199 ..     427     597 ..     400     603 .. 0.90

  Alignments for each domain:
  == domain 1    score: 104.5 bits;  conditional E-value: 9.2e-34
    TIGR00706  28 ddksvkalvlkidSPGGtvvaseeiyeklkklk.akkpvvasvgnvaaSGgyyialaadeivanegtlvGSiGVilesvnveklleklGieveaiksGeyKdilsdtrelteeekeilqslvnesyeqFvevvakgRnlsveevkklAdGrvftgrqalklkLvDklgsldda 199
                  + +    +++ ++S GGtv+       +l +lk +  ++ + v +vaaSGgy++++ ad+i+a++ +++GSiGVi e  nv + l++ Gi+++++ +G++K +l++t+++t e+     + + e +e F   va++R   + ++ ++A+G +++g  al+ +L D++ + dd 
  MMETSP1061-20121228|21419_1 427 NAQPGDEVLVILQSGGGTVTGYGLAAGQLTRLKeKGLKLTIAVEQVAASGGYMMSCVADRIIASPFAVIGSIGVISEIPNVYERLKEEGIKFQTVTAGKFKRTLTPTKKITREDLAKSEEDIAEIFELFKGWVAQNRP--QLNIDEVATGETWFGPAALEKGLCDEIKTVDDV 597
                  344456799999*********************66799***************************************************************************************************4..5667788********************999986 PP

>> TIGR00705  SppA_67K: signal peptide peptidase SppA, 67K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   2.7      0.35   4.8e+02     247     289 ..     276     319 ..     244     340 .. 0.69
   2 !   92.1   0.0   4.2e-30   5.8e-27     326     517 ..     410     597 ..     378     613 .. 0.89

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 0.35
    TIGR00705 247 kklkgdsakkaleekl..vtavvssaevekalkekfeededkear 289
                   k  g++a+k ++ +l  ++a+++ +e  k+++ek e+++dk++ 
  MMETSP1061-20121228|21419_1 276 AK-LGEAAEKMTDDDLevIDAEIEDKEDTKKDSEKSEDKKDKKKT 319
                  23.344444444443322788888888888999998888888765 PP

  == domain 2    score: 92.1 bits;  conditional E-value: 4.2e-30
    TIGR00705 326 reteenvggDtvaallrkarsDddvkAvvLRvnspGGsvfAseiirrelealkaaGkPvivsmGavAAsGgYWiasaadyivAdpntitGsiGvfsvlptvenlldriGvhvDevstselanv.sllrplteeeqaimqlsveagYerFlevvskaRnlskeqvdkvAqGrvwtGedAkkvGLvDelGgldeA 517
                  +  + n   ++v+ ++r+a+  d+v  v+  ++s+GG v+   +   +l +lk++G    +++ +vAAsGgY ++  ad+i+A+p  + GsiGv+s +p+v + l++ G++   v+ ++ + +   ++  t+e++a    ++ + +e F   v++ R   + ++d+vA G+ w G +A + GL De+  +d+ 
  MMETSP1061-20121228|21419_1 410 QASQLNELREEVTGVIRNAQPGDEVL-VI--LQSGGGTVTGYGLAAGQLTRLKEKGLKLTIAVEQVAASGGYMMSCVADRIIASPFAVIGSIGVISEIPNVYERLKEEGIKFQTVTAGKFKRTlTPTKKITREDLAKSEEDIAEIFELFKGWVAQNRP--QLNIDEVATGETWFGPAALEKGLCDEIKTVDDV 597
                  55677777889999999999999875.34..58***********************9999************************************************************999899***************************99885..568************************998875 PP

>> TIGR03897  lanti_2_LanM: type 2 lantibiotic biosynthesis protein LanM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.8   0.00087       1.2     482     562 ..     260     339 ..     250     343 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.00087
    TIGR03897 482 eeiedffktsglervleklkklsekdleeQlslIrnslkaakeeeeesekaskeaskekskelskeelleeakkiadeLle 562
                   +ie+ ++  ++++ l+kl +  ek  +  l++I   +++++ ++++sek++++++ +k+ + +keell+ea+k+ +++ e
  MMETSP1061-20121228|21419_1 260 SKIESTLAAVAMDAELAKLGEAAEKMTDDDLEVIDAEIEDKEDTKKDSEKSEDKKD-KKKTNPKKEELLKEATKLQTDIKE 339
                  57888888889999999*********************666666666666666666.788888999********9999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (689 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       289  (0.0704534); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.38u 0.12s 00:00:00.50 Elapsed: 00:00:00.36
# Mc/sec: 2526.12
//
Query:       MMETSP1061-20121228|21420_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1951.14
//
Query:       MMETSP1061-20121228|21436_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-35  119.7   0.0    3.5e-35  119.2   0.0    1.1  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
      1e-30  104.8   0.0    1.4e-30  104.3   0.0    1.1  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
      6e-28   95.6   0.0    7.8e-28   95.2   0.0    1.1  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    1.1e-27   94.6   0.0    1.6e-27   94.1   0.0    1.1  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
      1e-25   88.3   0.0    1.6e-25   87.7   0.0    1.2  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    7.6e-25   85.3   0.0    1.1e-24   84.8   0.0    1.1  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
      1e-23   81.5   0.0    1.4e-23   81.0   0.0    1.1  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    6.3e-21   72.5   0.0    1.3e-20   71.5   0.0    1.4  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
      6e-20   69.1   0.0    2.2e-19   67.3   0.0    1.7  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    2.3e-19   66.9   0.0    3.1e-19   66.5   0.0    1.1  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    7.7e-19   65.6   0.0    1.3e-18   64.8   0.0    1.4  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    1.5e-18   64.4   0.0    2.6e-18   63.6   0.0    1.3  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
  ------ inclusion threshold ------
       0.02   10.9   0.4        0.7    5.8   0.3    2.2  3  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN


Domain annotation for each model (and alignments):
>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.2   0.0   1.1e-37   3.5e-35      28     463 ..      89     554 ..      78     556 .. 0.81

  Alignments for each domain:
  == domain 1    score: 119.2 bits;  conditional E-value: 1.1e-37
    TIGR01804  28 evaeatredvekaiaaarraq....gewaalsaler.grilrriaellrkkneelakletldtGkaleetl.vad..iddiadvleffaGladkleGeiielgipsfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkimaaa.aeelkkvtlelGGksPlivfdda.........dlelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfd....ee.......telGPlisaehrdkvlkyiekgkeegakla..iGGkvpeeeeldeGffiePtvfadvtddmtivreeifGPvlsvlefeseeevikrandteyGlaagvfta..dleraervaerlka..Gtvwind.ynlspaevPfGGykqsGiGrengvaaleey 463
                  ++a+ ++e++   +  a++a     g w ++   er g + + i +l  +++e++ ++   + Gk  +++    d  ++ + +v+e      d+++G+  ++g  ++a vrr ++G+v  +g+ nyPl  +     Pal +Gn +++k   +  l     +e+++ a lP G +n v G+g+++   l+e  +++ +++ Gg  +   ++++    +  k+ l+l  k+  i + d          +l  avdq+ll+++   Gq c++    +++k   +kf +++ er++ +++G +++    +e       +++ Pl   ++ + +++ i+ + + gak++   GG++    +    + + P+v+  vt dm i  ee fGP++ + e+e+ + v+      +yG   ++f +  + + a  + +r+ +  G + in+    sp  +Pf G + s +G    + al+e+
  MMETSP1061-20121228|21436_1  89 KLAQMSKEQTLSVLGDAEKAWdggsGAWPQMPFRERlGAMEKLIKDLETNQREKMVQVLMWEIGKNRKDAEsEFDrtMSFGREVMEVLKN-DDEFGGSWKSIGS-TMAFVRRAAVGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLVHSLTMEAFQKA-LPVGAMNFVSGRGRDTMPVLMETGKIDALAFIGGSGAADTVIRQHpHPHRLKIFLQLEAKNMGIFLPDMfekgttkpeELSKAVDQSLLGALSFNGQRCTSLKLFFIPKGHGAKFSRHMAERIESMHVGLPWQswgsDEsdspprySDFTPLPNKSRTALMKRLIDDAVSKGAKIVneKGGEIIGGPD---STLMVPAVLFPVTPDMDIYYEEQFGPIVPITEYEDLDTVLSYGKTGIYGQQVSIFVSeeETKNAALLLDRFSTvfGKININSqCARSPDTLPFSGRRSSAMGVMSVKDALREF 554
                  555555555555555566665555599**9999999445556688999999*************99887631233113445566665543.4567777776666.9***********************************************99998889999876.***********************************99999999651557779*********99987663333334444899************************************************8875222222122222256778888888888999***********97336999998887...899************************************************999975115667888999997534888898625778999************99998888887 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.3   0.0   4.6e-33   1.4e-30      24     445 ..      89     539 ..      69     547 .. 0.77

  Alignments for each domain:
  == domain 1    score: 104.3 bits;  conditional E-value: 4.6e-33
    TIGR03240  24 evlwqgkaasaaqvekavkaarkafpawarlsleeriavvkrfaelle.eekeelaeviaketgkplweartevasmv..akvaisikayeertGekeseladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqG.aretGkalaaeedidGllftGssntGallhrqla..grpekilale...lGGnnplvve....evkdidaavhlivqsafisaGqrctcarrllvkdgaeGdallerlvevaerltvg....ky...daepqpflGav..isekaakellaaqekllalggksllelkqlee....eaalltpgii.dvtevaevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGl.lsddrelydkflleira...GivnwnkpltGassaapfGGiGa 445
                  +    +k+ + + + +a ka      aw ++++ er+  +++  + le +++e++ +v+  e gk + +a++e    +  ++  + +   ++  G + +++++++a++r  + G++  +Gp n+p       ++pall Gn v++k   +  lv   t+++++ka lp G +n+v G +r+t   l+++ +id l f G s +  ++ rq     r ++ l le   +G   p + e    + +++  av + +  a+   Gqrct  + +++++g +G+++ +++ e  e ++vg    ++   + ++ p       + +k++++l++   + +   g+++++ k  e     +++l+ p+++  vt   ++  ee fgp++ ++ y+d+d+ l+      +G  + + +s+++++   +ll+  +   G +n n + + +  + pf G  +
  MMETSP1061-20121228|21436_1  89 KLAQMSKEQTLSVLGDAEKAWDGGSGAWPQMPFRERLGAMEKLIKDLEtNQREKMVQVLMWEIGKNRKDAESEFDRTMsfGREVMEVLKNDDEFGGSWKSIGSTMAFVRRAAVGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLVHSLTMEAFQKA-LPVGAMNFVSGrGRDTMPVLMETGKIDALAFIGGSGAADTVIRQHPhpHRLKIFLQLEaknMGIFLPDMFEkgttKPEELSKAVDQSLLGALSFNGQRCTSLKLFFIPKG-HGAKFSRHMAERIESMHVGlpwqSWgsdESDSPPRYSDFtpLPNKSRTALMKRLIDDAVSKGAKIVNEKGGEIiggpDSTLMVPAVLfPVTPDMDIYYEEQFGPIVPITEYEDLDTVLSYGKTGIYGQQVSIfVSEEETKNAALLLDRFStvfGKININSQCARSPDTLPFSGRRS 539
                  444444555555555666666666679*************99877776156899*******************97543126667777778888999999***************************************************************998.9*********9569*****************99888877777776411566666777644467666766551111457789999999**************999999987.577777777777777776532225643223344555544225678888888876665666666677766655323348899999876489*999*********************************9998725666666666665533312277999999999999999998655 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.2   0.0   2.5e-30   7.8e-28      26     418 ..      84     503 ..      62     550 .. 0.77

  Alignments for each domain:
  == domain 1    score: 95.2 bits;  conditional E-value: 2.5e-30
    TIGR01722  26 nevlakvaeasaeevdaavasaretfa....awaetsvaerarvllry.qallkehrdeiaklisaeqGktledakGdvarGlevvehacsv..tslllGetvesvakdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhG.dkeavdrllehpdvkavsfvGsvavgeyiy.etgsahgkrvqalaGaknhmvvlpda.........dkeaaldalvgaavGaaGqrcmaisaa.vlvGaakelveeireraekvrvg.agddpg..........aelGplitkqakervasliasgakeGaevlldGrgykveGyeeGnfvGitllervkpdmkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsdGaaa 418
                    +++k+a+ s+e+  + +  a +++     aw + +  er   + +  + l  ++r+++ ++++ e Gk  +da+ +  r +       +v  +    G   +s+   +     r  +G+v  + p+n+p       +  a+  Gn  ++k      +      e +++a +p G +n v G +++++  l+e  ++ a++f+G + +++ +  ++   h  ++     akn ++ lpd          ++ +a+d+ +  a+   Gqrc ++    +  G   ++  ++ er+e ++vg +++  g          +++ pl +k+  + +++li++++ +Ga+++ + +g ++ G ++   + +++l  v pdm iy ee fGp++ + e + l+  +       yG+  +if s+  + 
  MMETSP1061-20121228|21436_1  84 RPIIGKLAQMSKEQTLSVLGDAEKAWDggsgAWPQMPFRERLGAMEKLiKDLETNQREKMVQVLMWEIGKNRKDAESEFDRTMSFGREVMEVlkNDDEFGGSWKSIGSTMAF-VRRAAVGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLVHSLTMEAFQKA-LPVGAMNFVSGrGRDTMPVLMETGKIDALAFIGGSGAADTVIrQHPHPHRLKIFLQLEAKNMGIFLPDMfekgttkpeELSKAVDQSLLGALSFNGQRCTSLKLFfIPKGHGAKFSRHMAERIESMHVGlPWQSWGsdesdspprySDFTPLPNKSRTALMKRLIDDAVSKGAKIVNE-KGGEIIGGPDSTLMVPAVLFPVTPDMDIYYEEQFGPIVPITEYEDLDTVLSYGKTGIYGQQVSIFVSEEETK 503
                  56899999999999999999999998544448***********99997245555677889*********************99888877777334557899999**999965.67999*************99988888889*********97666666666666777765.9*********944788999*************98777766550555667777778899**********633332222233445555555666778*******9762668999***************98655433311112233336899************************9866.666777889999999**************************************************9876543 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0     5e-30   1.6e-27      52     457 ..     114     543 ..      72     555 .. 0.80

  Alignments for each domain:
  == domain 1    score: 94.1 bits;  conditional E-value: 5e-30
    TIGR02299  52 kkwaelkaaerkklllkladliekh.adeiavlesldtGqalrlvrkavaraaenfrffadkaeeakd.getlpvd.eflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrng.adtlkrlslelGGksPvivfdda.........dleraldavvfmifslnGerctassrllvqesiaedfveklkervkairvGdPld.....ee......tevGPlikeehlakvlsylevaekeGatilv..GgkkakevldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfkdeeealelandieyGlag..yvwtedvgralrvaaalea..Gmiyvnsenvrdlrt.PfGGvkasGig 457
                   +w +++  er   + kl   +e +  +++  +   + G+  +  + +  r+    r   +  ++  + g ++++    + +  r++vG+v  + P n P+  +   + Pal +Gn v++k      l  +   e  ++  lP G +n+v G G+++   l+e  ++ a++f+G + + ++++r+   ++  ++ l+l  k+  i + d          +l +a+d  +    s+nG+rct+   +++ ++  ++f  ++ er+++++vG P +     e+      ++  Pl +++  a ++  ++ a  +Ga+i+   Gg+   +       +   ++P+vl  +   m i  ee fGP++ +  ++d + +l       yG     +v  e+++ a  + ++  +  G i +ns+  r   t Pf G ++s +g
  MMETSP1061-20121228|21436_1 114 GAWPQMPFRERLGAMEKLIKDLETNqREKMVQVLMWEIGKNRKDAESEFDRTMSFGREVMEVLKNDDEfGGSWKSIgSTMAFVRRAAVGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLVHSLTMEAFQK-ALPVGAMNFVSGRGRDTMPVLMETGKIDALAFIGGSGAADTVIRQHpHPHRLKIFLQLEAKNMGIFLPDMfekgttkpeELSKAVDQSLLGALSFNGQRCTSLKLFFIPKGHGAKFSRHMAERIESMHVGLPWQswgsdESdspprySDFTPLPNKSRTALMKRLIDDAVSKGAKIVNekGGEIIGG------PDSTLMVPAVLFPVTPDMDIYYEEQFGPIVPITEYEDLDTVLSYGKTGIYGQQVsiFVSEEETKNAALLLDRFSTvfGKININSQCARSPDTlPFSGRRSSAMG 543
                  3799999999999999987666655155677778889999999888888888877777777666543324445444488889999****************998889********************998877777666.5********************************999888887777415666778899*****9887655322223444489**************************************************98522221222222235789*************************96224433333......567899*********************************************7650155567788898888887755599*********98766*****999876 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.7   0.0   5.1e-28   1.6e-25       9     444 ..      86     554 ..      82     556 .. 0.80

  Alignments for each domain:
  == domain 1    score: 87.7 bits;  conditional E-value: 5.1e-28
    TIGR01780   9 kigkvpevsveeveeaieaaeealk....tykeltakerakllrkwy.elilenkddlaklltlenGkplkeakgevlyaasyleWfaeeak..rvyGdviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqs.astvkkvslelGGnaPlivfdda.........dldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvG.....dGldeg......vtvGplinekavekvekhiedavekGakvvv..gGdkreekggnffePtvlsdvtadmlvakeetfGPlapvfkfddeeevvalandtevGlaayffskd..lakiirvaeele..vGlvgvntgli.sevvipfGGvkesGlGregskyGieey 444
                  +igk++++s e++   +  ae+a++    ++ ++  +er   ++k++ +l  +++++++++l  e Gk  k+a++e   + s+ +   e  k    +G   +s   +   +v +  vG++  + P n+P         +al  G  v++k  +   l+  +l+  a +  +P g++n v + ++++  vl +  ++  ++f G +     +++q       k+ l+l  +   i  +d+         +l +av++ l       gq c     +++ ++   +f +++ae+++ ++vG      G de+      +   pl n++  + +++ i+dav+kGak+v   gG+ +   +++++ P+vl  vt dm +  ee fGP++p+ +++d + v+++     +G    +f  +  +++   + + +   +G + +n++   s  + pf G + s +G  + k  + e+
  MMETSP1061-20121228|21436_1  86 IIGKLAQMSKEQTLSVLGDAEKAWDggsgAWPQMPFRERLGAMEKLIkDLETNQREKMVQVLMWEIGKNRKDAESEFDRTMSFGREVMEVLKndDEFGGSWKSIG-STMAFVRRAAVGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLV-HSLTMEAFQKALPVGAMNFVSGRGRDTMPVLMETGKIDALAFIGGSGAADTVIRQHpHPHRLKIFLQLEAKNMGIFLPDMfekgttkpeELSKAVDQSLLGALSFNGQRCTSLKLFFIPKGHGAKFSRHMAERIESMHVGlpwqsWGSDESdspprySDFTPLPNKSRTALMKRLIDDAVSKGAKIVNekGGEIIGGPDSTLMVPAVLFPVTPDMDIYYEEQFGPIVPITEYEDLDTVLSYGKTGIYGQQVSIFVSEeeTKNAALLLDRFStvFGKININSQCArSPDTLPFSGRRSSAMGVMSVKDALREF 554
                  689999999999999999999998644448*********9999987538889999************************99998777664441145777776665.45678999*****************99999*************976666654.56777888999*******************************9876666666665515555678888877666555444322223344489********9999999*********************************9444333666652333335679**************************7335777888999************************************************877666543013344445555442269999998876255689********99987777766665 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   3.4e-27   1.1e-24      40     463 ..     104     555 ..      80     561 .. 0.81

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 3.4e-27
    TIGR03250  40 dvrralevaaayrskltryerskileraaell.aarkeeisdlitlesGlskkdslyevgrvadvlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiG.kliaakagykr..avlelGGndplivled.........adldraadlavkGsyknsGqrctavkrilvqesvadrftellvektralkyGdpl.....drs......vdlGtvideaaaklfeerveeavaeGarlllgnkr......dGalyaptvldrvdpelalvreetfGpvspvirfkdiddairisnstayglssg..vctnrldaitkliaele..vGtvnvwevpGyrleltpfGGikdsGlGykeGvqealksft 463
                  d+ +a++      +++   er   +e+ ++ l ++++e++ +++  e G  +kd+  e +r +  +   + evl++d + f     + g +  +  +r    g++  + p+n+pln+    ++pa+   n v++k      l   l ++ +++  lp   ++ v G  r+    l+   ++d ++f Gg      +i ++ + +r  + l+l   +  i l d         ++l +a d +  G+    Gqrct++k +++ +   ++f   + e+ + +++G p      d+s      +d+  + ++  ++l+++ +++av +Ga+++ ++        d +l+ p vl  v+p++++  ee fGp++p+  ++d+d  ++   +  yg   +  v  +++++ + l+  ++   G +n+        +  pf G + s +G    v++al++f+
  MMETSP1061-20121228|21436_1 104 DAEKAWDGGSGAWPQMPFRERLGAMEKLIKDLeTNQREKMVQVLMWEIGKNRKDAESEFDRTMS-FGREVMEVLKNDDE-FGGSWKSIGST--MAFVRRAAVGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLVHSLTMEAFQK-ALPVGAMNFVSGRGRDTMPVLMETGKIDALAFIGGSGAAdTVIRQHPHPHRlkIFLQLEAKNMGIFLPDmfekgttkpEELSKAVDQSLLGALSFNGQRCTSLKLFFIPKGHGAKFSRHMAERIESMHVGLPWqswgsDESdspprySDFTPLPNKSRTALMKRLIDDAVSKGAKIVNEKGGeiiggpDSTLMVPAVLFPVTPDMDIYYEEQFGPIVPITEYEDLDTVLSYGKTGIYGQQVSifVSEEETKNAALLLDRFStvFGKININSQCARSPDTLPFSGRRSSAMGVM-SVKDALREFS 555
                  555566666666667777788888888776551566777899*******************997.56677888888865.66666666654..4456778889*******************************9888888877777777665.5*******************************9987655056666666555226899*999999999999999999999*************************************************99886333333332222227899999999999****************98765412222267899********************************************97655115666777777777766522599999999999999999999999999975.6888888875 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.0   4.6e-26   1.4e-23      27     461 ..      87     544 ..      72     560 .. 0.82

  Alignments for each domain:
  == domain 1    score: 81.0 bits;  conditional E-value: 4.6e-26
    TIGR03216  27 iaevaeagkeevdaavkaaraa...lkgewgklsvaeraellkkvadeie.rrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvk.evslelGGknaaivfada.........dldaavegvlrsaflntGqvclgtervyverpifdrfvaalkekaeklklGvp.....edea......aelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtglpdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwted..lsrahrvakklev..Gvvwvnswflrdlrt.pfGGsklsGiGr 461
                  i+++a+ +ke+  + +  a++a    +g w ++  +er   ++k+ +++e ++ +++++  + + Gk ++ a+  +  r+++  r   +v+kn  ++ f  +     +++ ++ r  +G+v  + p n pl      + pal +Gn+v++k         +l  e ++++ +p G+ n v G G d+    l +  ++da++f G + + ++++++  +  + ++ l+l  kn +i + d          +l +av+  l  a++  Gq c + +  ++ +    +f + ++e++e++++G p     +de+      +++ pl  k+  + +    + av++Ga++v   G   +g    + + + p+++  ++ +  +  ee fGp+  ++ ++  + v++      yG   s++ ++   ++a  + +++++  G + +ns   r   t pf G + s +G 
  MMETSP1061-20121228|21436_1  87 IGKLAQMSKEQTLSVLGDAEKAwdgGSGAWPQMPFRERLGAMEKLIKDLEtNQREKMVQVLMWEIGKNRKDAE-SEFDRTMSFGREVMEVLKN--DDEFGGSWKSIGSTMAFVRRAAVGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLVHSLTMEAFQKA-LPVGAMNFVSGRGRDTMP-VLMETGKIDALAFIGGSGAADTVIRQHPHPHRlKIFLQLEAKNMGIFLPDMfekgttkpeELSKAVDQSLLGALSFNGQRCTSLKLFFIPKGHGAKFSRHMAERIESMHVGLPwqswgSDESdspprySDFTPLPNKSRTALMKRLIDDAVSKGAKIVNEKGGEIIGGP--DSTLMVPAVLFPVTPDMDIYYEEQFGPIVPITEYEDLDTVLSYGKTGIYGQQVSIFVSEeeTKNAALLLDRFSTvfGKININSQCARSPDTlPFSGRRSSAMGV 544
                  44444444444444444444440005689***************999987256799***********998775.5889***999*******97..67788888888899***********************99999**************999999999******9986.9**************986.6778899*****************999888775899**********99885444455555899************************************************984333322211222225688888888777778899***********98887666654..45667799999999999**************************************9865115566667777664336777888888877665888888888775 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.0     4e-23   1.3e-20      56     453 ..      83     504 ..      72     546 .. 0.79

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 4e-23
    TIGR01237  56 ksevvGkvakasvedaeqalqaakkafe....ewkktdveeraaillkaaailkrrrhe.lsallvlevGkiyaeadaevaeaidfleyyaremiklakskevlsieGeknrylyi.plGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftG.srevGlriyed......aakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgkt......dead.....vqvgpvidqksfdkikeyielgkaegklvlg...ge.dddskGyfikptifkdvdrkarlaqeeifGpvvavlrakdfdealeiansteygltGgvisnsrerie 453
                  k  ++Gk a++s e++   l  a ka++    +w +++ +er + + k  + l+  + e +  +l+ e+Gk+ ++a+ e   ++ f +   + + + ++ + + +  G +  ++     G+ + + p n+pl     + + +++ Gn+v++k     +++ +  +e +++a lp G ++fv G+G++    l++  k+  ++f G s +  + i ++         +q   k +   + ++  k +    +  ++ +av   + +a+ f+Gq+c++     + +    ++   + e+ +s++vg +      de+d     ++ +p+ ++   + +k  i+ + ++g  ++    ge   + +   + p+++  v ++  +  ee fGp+v +   +d d  l    +  yg   +++  + e  +
  MMETSP1061-20121228|21436_1  83 KRPIIGKLAQMSKEQTLSVLGDAEKAWDggsgAWPQMPFRERLGAMEKLIKDLETNQREkMVQVLMWEIGKNRKDAESEFDRTMSFGREVMEVLKNDDEFGGSWKSIGSTMAFVRRaAVGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLVHSLTMEAFQKA-LPVGAMNFVSGRGRDTMPVLMETGKIDALAFIGgSGAADTVIRQHphphrlKIFLQLEAKNMGIFLPDMFEKGTT---KPEELSKAVDQSLLGALSFNGQRCTSLKLFFIPKGHGAKFSRHMAERIESMHVGLPwqswgsDESDspprySDFTPLPNKSRTALMKRLIDDAVSKGAKIVNekgGEiIGGPDSTLMVPAVLFPVTPDMDIYYEEQFGPIVPITEYEDLDTVLSYGKTGIYGQQVSIFVSEEETKN 504
                  5568**********************9755558***************9999987655527788999*******************998877777777767777778999998875268***********************************************99886.*******************************87144444444332111100122344444444444444444443...345799*******************99887777777778888899******998533233334444222335799*****99***********9998776663443313455678999***********************************99999999888777766655544 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   6.8e-22   2.2e-19      61     496 ..      88     540 ..      51     546 .. 0.82

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 6.8e-22
    TIGR01236  61 akltnateedvkkaveaaldakk....eWselpfadraaiflkaadllsgkyreeilaatmlgqsktvyqaeidavaelidffrfnvkyarelleqqPsvsapgelnkveyrpleGfvaaisPfnftaiaanlagaPa.lmGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGG....kdfvl.vhpsadveevvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdv............ddlssfmgavideksfakivkviekakkdpeeleilaGGky.ddskGyfvePtvveskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdreaieeaekklrfaa..GnfyindkstGavvgqqpfGGarls 496
                  +kl + ++e+  + +  a +a+      W ++pf++r   + k  + l ++ re++  + m + +k+  +ae +     + f r  ++  ++  e   s ++ g++     r+  G v  + P+n+    +  +  Pa lmGnvv+ k  ++  l   l+m+ +++a lP g +nfv++ g     v +   ++ al f G      ++ ++   + ++ + f ++     G      f     +  +++++v   + ga+ ++Gq+c++    ++pk    ++  ++ ++ ++++vg +              +s  ++++ ++   a ++++i++a ++ +++    GG++       ++ P+v+    P+ +++ ee fGP++ + +y+d   + +l+   +t  y+   ++f ++ e+ + a    rf++  G   in +++ +     pf G r s
  MMETSP1061-20121228|21436_1  88 GKLAQMSKEQTLSVLGDAEKAWDggsgAWPQMPFRERLGAMEKLIKDLETNQREKMVQVLMWEIGKNRKDAESE-FDRTMSFGREVMEVLKNDDEFGGSWKSIGSTMAFVRRAAVGIVLCLGPMNYPLNETYATLIPAlLMGNVVIMKVPTVGGLVHSLTMEAFQKA-LPVGAMNFVSGRGRDTMPVLMETGKIDALAFIGGSGAADTVIRQH-PHPHRLKIFLQLEAKNMGiflpDMFEKgTTKPEELSKAVDQSLLGALSFNGQRCTSLKLFFIPKGHGAKFSRHMAERIESMHVGLPwqswgsdesdspPRYSD-FTPLPNKSRTALMKRLIDDAVSKGAKIVNEKGGEIiGGPDSTLMVPAVLFPVTPDMDIYYEEQFGPIVPITEYEDL--DTVLS-YGKTGIYGQQVSIFVSEEETKNAALLLDRFSTvfGKININSQCARSP-DTLPFSGRRSS 540
                  4444555554444444444443311128****************************************999988.6788889998888888888888899999999999*****************988888888899459***********************998.*******************************99888877777664.344667777777666666121133433133445678888899******************************************99999**988754333333.5789999999999*********99888888999972456778999****************************995..56665.589999*********99999999987777775448899999988764.55678777776 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.5   0.0   9.8e-22   3.1e-19      25     445 ..      88     521 ..      71     531 .. 0.79

  Alignments for each domain:
  == domain 1    score: 66.5 bits;  conditional E-value: 9.8e-22
    TIGR02278  25 GevlarvsseGldlaaavayarevGgkalraltfheraaklkalakyls.erkeelya.laattGatrrdnavdidGgigtlftyaskgrrelPdadlliedelealskdgsfqgrhiltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivGsvgdlldhl...dsrdvvaftGsaatae.klrahpnvleksirfsaeadslnaav..lGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarlakvklGdPre.....ed......vklGplvsveqredveaavaallaagaevrlgdpeeld....GaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGe.Gslvaslvtadpevarqfilg.laafhGrlhl 445
                  G++      + l +   ++ a + G+ a  ++ f+er   + +l k l  +++e++ + l+ + G +r+d+  + d +++        gr+ +  + l  +de+    k  + +   +  +  G+ + +  +n+P       l Pa+l G  +++k  t  + v    +  ++  + lP Ga+++++G  +d +  l    + d +af G   +a+  +r+hp   +  i ++ ea  +   +  + e+ t + +e+++ v + +    +  Gq+ct+++  ++Pk++ ++ ++ +++r++++++G P +     e        ++ pl ++ + + +++ ++  +++ga+++  + +e+      + + P++l    p+ d ++  e fGP++ +  y+d +  +   ++G  G  v+ +v+++++    ++l+  +++ G++++
  MMETSP1061-20121228|21436_1  88 GKLAQMSKEQTLSVLGDAEKAWDGGSGAWPQMPFRERLGAMEKLIKDLEtNQREKMVQvLMWEIGKNRKDAESEFDRTMS-------FGRE-V-MEVLKNDDEFGGSWKSIGSTMAFVRRAAVGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLVHSLTMEAFQ--KALPVGAMNFVSGRGRDTMPVLmetGKIDALAFIGGSGAADtVIRQHPHPHRLKIFLQLEAKNMGIFLpdMFEKGTTKPEELSKAVDQSLLGALSFNGQRCTSLKLFFIPKGHGAKFSRHMAERIESMHVGLPWQswgsdESdspprySDFTPLPNKSRTALMKRLIDDAVSKGAKIVNEKGGEIIggpdSTLMVPAVLFPVTPDMD-IYYEEQFGPIVPITEYEDLDTVLSYGKTGIyGQQVSIFVSEEETKNAALLLDrFSTVFGKINI 521
                  555555555677777777888999999999*******988888888885255666655278899********99998764.......4555.3.245667788888888889999999999**************************************99999887777665..679**************988772214569999987665555168******9999999999998776553356788889999**99999888888999**********************************9965333212122333357999*************************998888764444789******99999887.6778********************999996266666666555544444444415667787776 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.8   0.0   4.3e-21   1.3e-18     129     412 ..     192     498 ..      66     556 .. 0.78

  Alignments for each domain:
  == domain 1    score: 64.8 bits;  conditional E-value: 4.3e-21
    TIGR03374 129 htsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakdilpagvvnvlfgrgktvgdaltghekvrmvslt.gsiatgehilahtaasikrthmelggkapvivfdda.........didavvegvrtfgfynagqdctaacriyaqrgiydelveklgkavatlkigap.....edes......telgplsslahlervsaaveeakals.hikvitggekvkg.kgyyfaptllagakqddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtk 412
                    +++rr  vg+v  + p nypl  +   l pal  gn+v++k   +  l      e  +  lp g +n + grg++   +l    k+  +++  gs a+   i +h  +   +  ++l  k   i + d          ++ + v+          gq ct+   +++ +g   ++  ++ + + ++++g p     +des      +++ pl ++++   +++++++a + + +i    gge   g +   + p++l     d +i  +e fgp+v it ++d + v+++ +   yg   s++  
  MMETSP1061-20121228|21436_1 192 TMAFVRRAAVGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLVHSLTMEAFQKALPVGAMNFVSGRGRDTMPVLMETGKIDALAFIgGSGAADTVIRQHPHPHRLKIFLQLEAKNMGIFLPDMfekgttkpeELSKAVDQSLLGALSFNGQRCTSLKLFFIPKGHGAKFSRHMAERIESMHVGLPwqswgSDESdspprySDFTPLPNKSRTALMKRLIDDAVSKGaKIVNEKGGEIIGGpDSTLMVPAVLFPVTPDMDIYYEEQFGPIVPITEYEDLDTVLSYGKTGIYGQQVSIFVS 498
                  45789**************************************9999999887777888899**************************98876516778888888999**999*********99997666322222222234444444333445567********************************998855555577633433357889999888888899999998775156666899999884467899********************************************99999865 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.6   0.0   8.3e-21   2.6e-18      61     446 ..      83     503 ..      72     543 .. 0.79

  Alignments for each domain:
  == domain 1    score: 63.6 bits;  conditional E-value: 8.3e-21
    TIGR01238  61 rkdivGqvseadaaevqeavdsavaaf....aewsatdakeraailerladlles.hmpelvallvreaGktlsnaiaevreavdflryyakqvedvldeesaka.................lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkala..kredapvpliaetGGq..namivdstalaeqvvadv...lasafdsaGqrcsalrvlcvqedvadrvltlikGamdelkvgkpirl...........ttdvGpvidaeakqnllahiekmkakakkvaqvkleddvesekgtf.vaptlfeld.dldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetv 446
                  ++ i+G++ + ++++    ++ a +a       w  ++ +er   +e+l + le+ +  ++v++l+ e Gk  ++a +e   ++ f r    +v +vl+++                     +G v+c+ p n+pl      +  al  Gn vi k      l+ + ++e +q+a +p g+++++ GrG d    l +  +i  ++f G +  a  + ++    +r +    l a+  G     m    t+ +e++ + v   l  a+   Gqrc++l+++++ +    +    +   ++ ++vg p +             +d  p+ ++     +++ i+   +k+ k+ + k  +      +t+ v+ +lf +  d+d   +e+fGp++ +  y+  +ld v+    +  yg  + +    eet 
  MMETSP1061-20121228|21436_1  83 KRPIIGKLAQMSKEQTLSVLGDAEKAWdggsGAWPQMPFRERLGAMEKLIKDLETnQREKMVQVLMWEIGKNRKDAESEFDRTMSFGR----EVMEVLKNDDEFGgswksigstmafvrraaVGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLVHSLTMEAFQKA-LPVGAMNFVSGRGRDTMPVLMETGKIDALAFIGGSGAADTVIRQHPhpHRLKIFLQLEAKNMGIflPDMFEKGTTKPEELSKAVdqsLLGALSFNGQRCTSLKLFFIPKGHGAKFSRHMAERIESMHVGLPWQSwgsdesdspprYSDFTPLPNKSRTALMKRLIDDAVSKGAKIVNEKGGEIIGGPDSTLmVPAVLFPVTpDMDIYYEEQFGPIVPITEYE--DLDTVLSYGKTGIYGQQVSIFVSEEETK 503
                  567899999999999988998888875222268**************9988787615677889***************9988887766....555555555332244566999**********************************************************9998.9******************************988877776655554015666666677776665224688889****99877662225668999*************999888888888888888888888764222211111114577777776666677788999888888888888888777777776155578887549***************9995..7898888777777888777777777764 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.3    0.0022       0.7     194     240 ..     201     247 ..     192     262 .. 0.82
   2 ?   -4.1   0.0       2.3   7.4e+02     323     349 ..     337     362 ..     333     365 .. 0.75
   3 ?    2.5   0.0     0.022         7     398     463 ..     418     483 ..     408     521 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0022
    TIGR02288 194 rGialvigcstfptwntypGlfaslatGnavlvkphpgailplaltv 240
                   Gi l +g   +p  +ty  l  +l  Gn v++k      l  +lt+
  MMETSP1061-20121228|21436_1 201 VGIVLCLGPMNYPLNETYATLIPALLMGNVVIMKVPTVGGLVHSLTM 247
                  599999***************************97666555555555 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 2.3
    TIGR02288 323 vlrnlafslslysGqmctttqailvpr 349
                  v + l  +ls + Gq ct+ +  ++p+
  MMETSP1061-20121228|21436_1 337 VDQSLLGALS-FNGQRCTSLKLFFIPK 362
                  5555555555.68******99999997 PP

  == domain 3    score: 2.5 bits;  conditional E-value: 0.022
    TIGR02288 398 iaearalGevlldskklehpefpdarvrtplllkvdaadeaayaeerfGpiafvvavddaahavel 463
                  i++a ++G  +++ k  e    pd+++  p +l   + d + y ee+fGpi  + + +d +  +  
  MMETSP1061-20121228|21436_1 418 IDDAVSKGAKIVNEKGGEIIGGPDSTLMVPAVLFPVTPDMDIYYEEQFGPIVPITEYEDLDTVLSY 483
                  56777777777777777777788999999999999999*************988888887776665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.52u 0.15s 00:00:00.67 Elapsed: 00:00:00.41
# Mc/sec: 1883.26
//
Query:       MMETSP1061-20121228|21448_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 993.39
//
Query:       MMETSP1061-20121228|21437_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-84  279.5   0.0    5.3e-84  279.3   0.0    1.0  1  TIGR00674 dapA: dihydrodipicolinate synthase
    6.6e-57  190.4   0.0    8.3e-57  190.0   0.0    1.0  1  TIGR02313 HpaI-NOT-DapA: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
    6.8e-37  125.2   0.0      9e-37  124.8   0.0    1.0  1  TIGR00683 nanA: N-acetylneuraminate lyase
    6.6e-23   79.1   0.0    9.2e-23   78.6   0.0    1.1  1  TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase


Domain annotation for each model (and alignments):
>> TIGR00674  dapA: dihydrodipicolinate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  279.3   0.0   5.2e-87   5.3e-84       2     284 ..      48     333 ..      47     335 .. 0.96

  Alignments for each domain:
  == domain 1    score: 279.3 bits;  conditional E-value: 5.2e-87
    TIGR00674   2 vltAliTPfkedgsvdfaalekliesqiekgvdaivvvGtTGEsatLsleEkkkvievavelvknrvpviaGtgsnateeaieltkeaeklgvdgvlvvtPyYnkPtqeGlykhfkaiaeevelPiilYnvPsRtgvslepetvkrLaeeveivaiKeasgdlervseika....eakedfkvlsGdDaltleilalGakGviSVasnvapkelkemvkaalegdteeareihqkllklfkalfietNPipvKtalallgliekdelRlPLtelseekkeklkevlk 284
                  + +Al TPf edg++d+  lekli++++e+++d + v+GtT E+a +s+eE++  +++ v  +k+++p+++G+g+ + +++ + t++a +lg+d+ l+v+PyY+kP q+Gl++hf ++a+ + lP++lYnvP+Rt+v+l++et++ L+++++iv+iK+a+gd++r++++k+    ea+++f  +sGdD +t+++++ G+ G +SV++n+apk ++emv+aal+g+ + a e++q l  l++ lf+e+NPip K+ ++ +g+i +d +R+PL  ++ + +  l+e+l+
  MMETSP1061-20121228|21437_1  48 STVALFTPFTEDGKIDVPGLEKLIDFHLEAQTDNLCVLGTTAEAAVMSMEERELALKTIVGKAKGKIPLMVGVGTINPNDVKKYTQQAIDLGADASLLVSPYYVKPPQRGLINHFTTMAD-MGLPVVLYNVPGRTAVDLSDETIATLSQHENIVGIKDATGDVSRLTSLKNvlgeEASKHFLKYSGDDGTTTDFVLEGGDGCVSVTANIAPKAMREMVHAALDGNDQLAIELNQPLALLHSRLFVESNPIPAKWCAHRMGIIDSDFCRPPLDSMDPQFHAFLEEALA 333
                  789******************************************************************************************************************987.68*********************************************996222256789************************************************************************************************99999998876 PP

>> TIGR02313  HpaI-NOT-DapA: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  190.0   0.0   8.1e-60   8.3e-57       2     278 ..      46     324 ..      45     337 .. 0.93

  Alignments for each domain:
  == domain 1    score: 190.0 bits;  conditional E-value: 8.1e-60
    TIGR02313   2 rgsiaplitpfkvngdldekklrelvervvengshavsvtgtsgepssltleerkrvievvldtvagrvpvipgtgalrleetleltkkakeagadaamvivpyyvkpnqealydyfkevadavpdiplliynipgraaveievktvarlvkdfpnivglkesskdleyls...rlll.eagrdfllfsglelltlpmlalgavgsiaatanvepkkvaelhekaeegdikrarelhfellelnevlfkdtnpiplkavlslmgllekvl.rrplgltsdel 278
                  rgs   l tpf  +g++d   l++l+++ +e+ +  + v gt+ e + +++eer  ++++++ + +g++p++ g g+++ ++  + t++a ++gada++++ pyyvkp q +l ++f+++ad    +p+++yn+pgr+av+++  t+a l +   nivg+k+++ d+  l+   ++l  ea + fl +sg +  t  ++  g+ g+++ tan+ pk + e+ ++a++g+ + a el   l  l   lf ++npip k     mg+++  + r+pl    ++ 
  MMETSP1061-20121228|21437_1  46 RGSTVALFTPFTEDGKIDVPGLEKLIDFHLEAQTDNLCVLGTTAEAAVMSMEERELALKTIVGKAKGKIPLMVGVGTINPNDVKKYTQQAIDLGADASLLVSPYYVKPPQRGLINHFTTMADMG--LPVVLYNVPGRTAVDLSDETIATLSQ-HENIVGIKDATGDVSRLTslkNVLGeEASKHFLKYSGDDGTTTDFVLEGGDGCVSVTANIAPKAMREMVHAALDGNDQLAIELNQPLALLHSRLFVESNPIPAKWCAHRMGIIDSDFcRPPLDSMDPQF 324
                  9*************************************************************************************************************************88..************************87.58***********8876511144533799************************************************************************************9986477887766655 PP

>> TIGR00683  nanA: N-acetylneuraminate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  124.8   0.0   8.8e-40     9e-37       2     288 ..      46     338 ..      45     342 .. 0.93

  Alignments for each domain:
  == domain 1    score: 124.8 bits;  conditional E-value: 8.8e-40
    TIGR00683   2 kGvlaallvsfdedqaldkkslrrlvrfnidkgvdGlyvGGstGeafvlsleekkevleivkeeakdkikliaqvGsvslkeavelaksakelGydalsavtpfyykfsfeeikdyydaiideadglnmvvysipalsGvkltleqinelvklpkvlalkftaGdlyllerlkk.....eypdlllyaGydeillsalllGvdGaiGstynvnGvrarqivkllkeGdlaealklqtvtndlielllktGlyltlkellkylevvdvglcrkpltpvd...ekaleelkakakdl 288
                  +G   al+++f ed+ +d  +l +l+ f ++   d l v G+t ea v+s+ee++  l+ +  +ak+ki l+  vG+++ ++ ++ +++a +lG da   v+p+y k       +++ ++ d   gl++v+y++p  + v+l+ e i++l +  ++ ++k ++Gd+ +l  lk+     +  ++l y+G d      +l G dG++  t n+    +r++v++  +G+ + a +l++    l   l+ +      k   + +  +d  +cr pl  +d   + +lee +a a+ l
  MMETSP1061-20121228|21437_1  46 RGSTVALFTPFTEDGKIDVPGLEKLIDFHLEAQTDNLCVLGTTAEAAVMSMEERELALKTIVGKAKGKIPLMVGVGTINPNDVKKYTQQAIDLGADASLLVSPYYVKPPQRGLINHFTTMADM--GLPVVLYNVPGRTAVDLSDETIATLSQHENIVGIKDATGDVSRLTSLKNvlgeeASKHFLKYSGDDGTTTDFVLEGGDGCVSVTANIAPKAMREMVHAALDGNDQLAIELNQPLALLHSRLFVESNPIPAKWCAHRMGIIDSDFCRPPLDSMDpqfHAFLEEALATANML 338
                  67789****************************************************************************************************************998664..59******************************************99996333213345677*************************************************************99999*********************9988822245689999998876 PP

>> TIGR03249  KdgD: 5-dehydro-4-deoxyglucarate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.6   0.0     9e-26   9.2e-23      17     230 ..      53     269 ..      44     291 .. 0.84

  Alignments for each domain:
  == domain 1    score: 78.6 bits;  conditional E-value: 9e-26
    TIGR03249  17 vtpfdadgsldeaalrenieflldedlealfvagGtGeffsltkaeveqvvevaveaakgkvPvlagvGg.nlsvaieiaraaekkGadGllllPpylieaeqeGlaayvkaviesvdlgvivyq...rdnavleadtlerlaerlpnlvGfkdGiGdiekvieitqklGdrll.ylgGlPtaevtalaylalGvtsyssaifnfiPkiarkfyealrk 230
                   tpf +dg++d   l++ i+f l+ + + l v g t e   ++ +e e  ++  v +akgk+P++ gvG  n ++  +++++a   Gad  ll+ py ++  q+Gl+++  +++  + l v++y+   r  + l+ +t++ l +  +n+vG+kd  Gd+ +++++++ lG+    +       + t + ++  G +   s   n  Pk  r++ +a   
  MMETSP1061-20121228|21437_1  53 FTPFTEDGKIDVPGLEKLIDFHLEAQTDNLCVLGTTAEAAVMSMEERELALKTIVGKAKGKIPLMVGVGTiNPNDVKKYTQQAIDLGADASLLVSPYYVKPPQRGLINHFTTMA-DMGLPVVLYNvpgRTAVDLSDETIATLSQ-HENIVGIKDATGDVSRLTSLKNVLGEEASkHFLKYSGDDGTTTDFVLEGGDGCVSVTANIAPKAMREMVHAALD 269
                  599******************************************************************7467888899*******************************9875.689******977799999**********9.9************************9753133334444555555555566666666666666665555555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1676.75
//
Query:       MMETSP1061-20121228|21465_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-08   32.7   0.0    1.1e-05   23.0   0.0    2.2  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    1.2e-05   22.7   0.0    0.00035   17.9   0.0    2.1  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
      2e-05   22.2   0.0      0.017   12.6   0.0    2.2  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
    2.2e-05   21.8   0.0     0.0085   13.3   0.0    2.1  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
     0.0013   16.0   0.1      0.034   11.3   0.0    2.1  2  TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase


Domain annotation for each model (and alignments):
>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   1.4e-08   1.1e-05      21     140 ..     104     236 ..      85     247 .. 0.79
   2 !    7.8   0.0   0.00058      0.48     221     287 ..     252     323 ..     248     324 .. 0.79

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 1.4e-08
    TIGR01250  21 eegekik.llvlHGGPgssheyleslkellke.gvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLaldkfyllgqSwGglLa...qeYalkyqqh........lkgliissmlasipeyvkel 140
                  + ++ i+ ++  HG  g+    l +  ++l++ + +v++ D  G g+Sdq   s++ l    + v   ++   k+  ++++l+g+S Gg+ +   ++Ya +  ++        lkg+i++++  sip  v  l
  MMETSP1061-20121228|21465_1 104 NVSDSIPtIIFFHGNAGNMGFRLPNAMKMLRRlNANVLMVDYRGYGRSDQVAPSESGLRLDGQAVLNFAQNHPKIDPTNIFLFGRSLGGAVTfatAKYAQENSNGrgannihpLKGIIVENTFTSIPDMVDAL 236
                  444444427789******999*****************************88777655555589*************************98622256777654323344455589************998765 PP

  == domain 2    score: 7.8 bits;  conditional E-value: 0.00058
    TIGR01250 221 wditdklkeIkvPtLltvgefdemtp.eaaremqekiaks...rlvvfedgshltmi.eepeeylkllkdfl 287
                  w+    +  +++P L+  g  de+ p +++ +++ ++  s   rl+v++ g+h + + +   +y + +k fl
  MMETSP1061-20121228|21465_1 252 WHSVSIVPTLTCPVLYLAGSMDEIVPhSQMLKLHRSTTMSilnRLHVIQRGTHNESWvQGGGMYWEAIKSFL 323
                  66666777899***********98762567888888887766699********8765166788999999887 PP

>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   4.3e-07   0.00035       3      95 ..     110     205 ..     108     230 .. 0.75
   2 ?    2.9   0.0     0.016        13     191     234 ..     258     305 ..     252     324 .. 0.64

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 4.3e-07
    TIGR03695   3 pvlvlLHGflgske.dwqalieele.ekfsvlalDLpgHGkskslk.ekeakdfeeaaqellkelleklkiekviLvGYSlGGRialalaleaper 95 
                  p+++++HG  g++     +++++l+  + +vl++D  g G+s++ + +++   ++ +a    ++   k++ ++++L+G SlGG +  a a  a+e+
  MMETSP1061-20121228|21465_1 110 PTIIFFHGNAGNMGfRLPNAMKMLRrLNANVLMVDYRGYGRSDQVApSESGLRLDGQAVLNFAQNHPKIDPTNIFLFGRSLGGAVTFATAKYAQEN 205
                  789********98624556666664357889**********9855314444556655555588999999****************99999888873 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.016
    TIGR03695 191 lkelklpvlylvGekDe..kFkkiakemqkl..lpalklevieeaGHn 234
                  + +l++pvlyl+G+ De   ++++ k  +++      +l+vi++  Hn
  MMETSP1061-20121228|21465_1 258 VPTLTCPVLYLAGSMDEivPHSQMLKLHRSTtmSILNRLHVIQRGTHN 305
                  56789***********83324555444333300334578888888887 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00073       0.6       7      83 ..     112     199 ..     106     207 .. 0.59
   2 !   12.6   0.0   2.1e-05     0.017     184     227 ..     258     304 ..     230     309 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00073
    TIGR01738   7 lvLihGWglnaev.fadlveeLsa.hftlslvDLPGyGdsaelrals..laevaeaila......qa.pakaiwlGWsLGGLvalhla 83 
                  ++  hG + n +    + ++ L+  + ++ +vD  GyG+s ++ + +  l    +a+l+      ++ p++  + G sLGG v    a
  MMETSP1061-20121228|21465_1 112 IIFFHGNAGNMGFrLPNAMKMLRRlNANVLMVDYRGYGRSDQVAPSEsgLRLDGQAVLNfaqnhpKIdPTNIFLFGRSLGGAVTFATA 199
                  6666666666554123445555441457999********999998643354445555541111112313455567******9976655 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 2.1e-05
    TIGR01738 184 lqkisvPvLrlyGqkDalvPakvvealdklap...qsellvlekaah 227
                  +  ++ PvL+l+G  D +vP   + +l++ +      +l v+++++h
  MMETSP1061-20121228|21465_1 258 VPTLTCPVLYLAGSMDEIVPHSQMLKLHRSTTmsiLNRLHVIQRGTH 304
                  56789*******************99999988333457888888888 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0     1e-05    0.0085      38      97 ..     136     199 ..     103     207 .. 0.74
   2 !    6.5   0.0    0.0013         1     190     250 ..     259     323 ..     253     324 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1e-05
    TIGR02427  38 kdfrvlryDkrGHGlSdvpeg.pysiedladdvlallD...algiekaavcGlSlGGliaqaLa 97 
                   + +vl++D rG G+Sd ++  + ++   ++ vl+ +    +++  ++ ++G SlGG+++ a a
  MMETSP1061-20121228|21465_1 136 LNANVLMVDYRGYGRSDQVAPsESGLRLDGQAVLNFAQnhpKIDPTNIFLFGRSLGGAVTFATA 199
                  35789***********86665055688889999988762224677889999*******987655 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0013
    TIGR02427 190 eeiavPtlviaGdeDgstPpelvreiadlvpga...rfaeieeaaHlpnl.eqpeafaallrdfl 250
                    ++ P+l +aG+ D   P +++ ++  + + +   r+++i+ ++H  ++ + +  +++++++fl
  MMETSP1061-20121228|21465_1 259 PTLTCPVLYLAGSMDEIVPHSQMLKLHRSTTMSilnRLHVIQRGTHNESWvQGGGMYWEAIKSFL 323
                  57899****************98888776665422266778888887665144567888888887 PP

>> TIGR02240  PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0      0.02        17      60     102 ..     116     160 ..      84     207 .. 0.51
   2 !   11.3   0.0   4.2e-05     0.034     188     244 ..     243     302 ..     237     306 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.02
    TIGR02240  60 pgvggsstprvpyrfpglaklaar..mldyldygqvnvigvswgg 102
                   g  g    r p  +  l +l a   m+dy  yg+ + +  s  g
  MMETSP1061-20121228|21465_1 116 HGNAGNMGFRLPNAMKMLRRLNANvlMVDYRGYGRSDQVAPSESG 160
                  344444455555555555555554225566666665555443332 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 4.2e-05
    TIGR02240 188 ywqlfaglgwtsihwlhkirqptlvlagdddpliplinmrllawripn...aelhviddg 244
                  + +l+  +gw s+  +  +  p l lag  d ++p  +m  l          +lhvi+ g
  MMETSP1061-20121228|21465_1 243 FKRLILAIGWHSVSIVPTLTCPVLYLAGSMDEIVPHSQMLKLHRSTTMsilNRLHVIQRG 302
                  5678899****************************9999666443322111367888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1456.00
//
Query:       MMETSP1061-20121228|21466_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 2151.42
//
Query:       MMETSP1061-20121228|21490_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-13   47.4   0.0    1.5e-06   25.7   0.0    2.1  2  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    1.1e-09   35.5   0.0    3.9e-07   27.2   0.0    2.1  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    5.8e-08   30.3   0.0      3e-06   24.6   0.0    2.1  2  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
    2.1e-06   25.4   0.0      0.013   12.9   0.0    2.3  2  TIGR01250 pro_imino_pep_2: proline-specific peptidases
    4.5e-06   24.3   0.0       0.02   12.3   0.0    2.3  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
     0.0002   18.5   0.0    0.00065   16.8   0.0    1.7  2  TIGR03343 biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
  ------ inclusion threshold ------
      0.021   12.0   0.0      0.071   10.3   0.0    1.7  2  TIGR03611 RutD: pyrimidine utilization protein D


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.5e-09   1.5e-06       2      93 ..      58     150 ..      57     155 .. 0.85
   2 !   19.8   0.0   1.6e-07   9.4e-05     190     251 ..     262     325 ..     247     326 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.5e-09
    TIGR03695   2 kpvlvlLHGflgskedwqalieele.ekfsvlalDLpgHGkskslkekeakdfeeaaqellkellekl.kiekviLvGYSlGGRialalaleap 93 
                  +p l+lLHGf +s  +++++ +el+ + +++ a+D++g G ++   + +  + ++ ++ l   +++k+ +++ +++ G SlGG   ++la++ +
  MMETSP1061-20121228|21490_1  58 TPPLILLHGFDSSCLEYRRMGPELAaQGIETYAVDILGWGFTQLD-DVTSFSADAKIETLKGFVKTKFgDQSAFCVAGASLGGAASIELAAALS 150
                  689*********************7599***************88.667777777788878889999966778999*******99999888765 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 1.6e-07
    TIGR03695 190 klkelklpvlylvGekDekF..kkiakemqkllpalklevieeaGHnihlenpeafakileefl 251
                  k+ +++ p l l G +D     ++ a+++ ++l++++l+ iee+GH  hle+p + a+++ +fl
  MMETSP1061-20121228|21490_1 262 KVPKIESPALVLWGRQDGILdgTEFANKFVEELQDAELKWIEECGHVPHLEQPLETASTIVSFL 325
                  5778999999*******87633689********************************9999997 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   6.6e-10   3.9e-07      10     118 ..      40     151 ..      32     157 .. 0.89
   2 !    6.3   0.0    0.0016      0.93     215     276 ..     262     324 ..     245     326 .. 0.86

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 6.6e-10
    TIGR03056  10 rvdvgpfdWlvrdeGpaaGPvllllhGagasshsfrklvpllaar.frvvapdlPGhGftratarfrfslkamaedlakllaae..dlsPdaviGhsaGaaialrlaldlpv 118
                   v v+ ++W  ++  + + P l+llhG  +s   +r++ p laa+     a+d+ G Gft+      fs +a  e l  +++++  d s  +v G s G+a  + la  l++
  MMETSP1061-20121228|21490_1  40 SVGVSYIHWPANKSKKLSTPPLILLHGFDSSCLEYRRMGPELAAQgIETYAVDILGWGFTQLDDVTSFSADAKIETLKGFVKTKfgDQSAFCVAGASLGGAASIELAAALSI 151
                  5678899*****99999*************************98647899****************************999876447888899********99999988776 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0016
    TIGR03056 215 alpriavPvlliageedkavp.pdvskeaatrlplatlrevpGlGhlvheedadgvaglilda 276
                  ++p+i+ P l++ g +d+ +  ++ +++  + l  a l+ ++  Gh+ h e++   a+ i  +
  MMETSP1061-20121228|21490_1 262 KVPKIESPALVLWGRQDGILDgTEFANKFVEELQDAELKWIEECGHVPHLEQPLETASTIVSF 324
                  689***************99725678999**********************998888877766 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0     0.014       8.1      12      99 ..      57     148 ..      45     154 .. 0.62
   2 !   24.6   0.0   5.1e-09     3e-06     189     251 .]     263     326 ..     258     326 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.014
    TIGR02427  12 dkpvlvlinSLGtdlrlwdkvlealtk.dfrvlryDkrGHGlSdvpeg.pysiedladdvlallDal..giekaavcGlSlGGliaqaLaar 99 
                  + p l+l+  + ++   ++ + ++l++  +++ ++D  G G  ++ ++ ++s +   + + + + +   + + + v+G SlGG+ +  Laa 
  MMETSP1061-20121228|21490_1  57 STPPLILLHGFDSSCLEYRRMGPELAAqGIETYAVDILGWGFTQLDDVtSFSADAKIETLKGFVKTKfgDQSAFCVAGASLGGAASIELAAA 148
                  56666666666666666666666665414677777777888776665413455555555555544321144566788*********999986 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 5.1e-09
    TIGR02427 189 leeiavPtlviaGdeDgstPpe.lvreiadlvpgarfaeieeaaHlpnleqpeafaallrdflk 251
                  + +i+ P+lv+ G++Dg    +  +++ ++ + +a+++ iee++H+p leqp + a+++++fl+
  MMETSP1061-20121228|21490_1 263 VPKIESPALVLWGRQDGILDGTeFANKFVEELQDAELKWIEECGHVPHLEQPLETASTIVSFLT 326
                  789*************99876527899***********************************95 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.0   0.00015      0.09      19     114 ..      52     146 ..      41     155 .. 0.80
   2 !   12.9   0.0   2.2e-05     0.013     226     287 ..     262     325 ..     255     326 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00015
    TIGR01250  19 vkeegekikllvlHGGPgssheyleslkellkegvevilYDQLGsgkSdqPddsdeklltidrfvdElee.vrekLaldk.fyllgqSwGglLaqeYa 114
                  ++++    +l++lHG  +s  ey     el+++g+e +  D LG g  +  d    + +  d  ++ l+  v+ k + +  f + g S Gg+  +e a
  MMETSP1061-20121228|21490_1  52 KSKKLSTPPLILLHGFDSSCLEYRRMGPELAAQGIETYAVDILGWGFTQLDDV---TSFSADAKIETLKGfVKTKFGDQSaFCVAGASLGGAASIELA 146
                  444556789********9999**9999999999*************9988766...569*********97356666665589999******9877765 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 2.2e-05
    TIGR01250 226 klkeIkvPtLltvgefdem..tpeaaremqekiaksrlvvfedgshltmieepeeylkllkdfl 287
                  k+ +I+ P+L+  g++d +    e a++  e++++++l+ +e+++h++ +e+p e  +++  fl
  MMETSP1061-20121228|21490_1 262 KVPKIESPALVLWGRQDGIldGTEFANKFVEELQDAELKWIEECGHVPHLEQPLETASTIVSFL 325
                  6789*************983347889**************************999888888887 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00023      0.14       6      91 ..      60     154 ..      56     155 .. 0.74
   2 !   12.3   0.0   3.4e-05      0.02     184     244 ..     263     324 ..     260     325 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00023
    TIGR01738   6 klvLihGWglnaevfadlveeLsah.ftlslvDLPGyGd..saelralslaevaeailaqa.....pakaiwl.GWsLGGLvalhlalthpdkvr 91 
                   l+L+hG+      ++ + +eL a+  + ++vD+ G+G      ++++s ++ +e++   +     ++ a  + G sLGG  +++la+ ++  v+
  MMETSP1061-20121228|21490_1  60 PLILLHGFDSSCLEYRRMGPELAAQgIETYAVDILGWGFtqLDDVTSFSADAKIETLKGFVktkfgDQSAFCVaGASLGGAASIELAAALSISVK 154
                  699*******************9864799*******997334567777777666665432211122566654449***********999887665 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 3.4e-05
    TIGR01738 184 lqkisvPvLrlyGqkDalvP.akvvealdklapqsellvlekaahaPflshaeafaallref 244
                  + ki+ P L l+G++D++   ++ +++  + ++ +el  +e+ +h P l ++ + a  ++ f
  MMETSP1061-20121228|21490_1 263 VPKIESPALVLWGRQDGILDgTEFANKFVEELQDAELKWIEECGHVPHLEQPLETASTIVSF 324
                  6799*************9862678889999999****************9999888877766 PP

>> TIGR03343  biphenyl_bphD: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.41   2.4e+02      90     119 ..     115     146 ..      64     151 .. 0.68
   2 !   16.8   0.0   1.1e-06   0.00065     217     280 ..     261     325 ..     248     327 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.41
    TIGR03343  90 avkglmdal.diekah.lvgnsmggatalnfa 119
                  ++kg++ +  + + a  + g s+gga+++++a
  MMETSP1061-20121228|21490_1 115 TLKGFVKTKfGDQSAFcVAGASLGGAASIELA 146
                  45665554313333441458999999988876 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 1.1e-06
    TIGR03343 217 drlgeikaktlvtwgrddrfvp.ldhglklvanlpdaqlhvfsrcghwaqwehadafnrlvidfl 280
                   ++ +i++ +lv wgr+d ++   +   k+v  l+da+l+ +  cgh    e+  +    ++ fl
  MMETSP1061-20121228|21490_1 261 LKVPKIESPALVLWGRQDGILDgTEFANKFVEELQDAELKWIEECGHVPHLEQPLETASTIVSFL 325
                  57889*************9875267799*******************999998877777777776 PP

>> TIGR03611  RutD: pyrimidine utilization protein D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.52   3.1e+02      82     100 ..     130     148 ..     122     154 .. 0.82
   2 ?   10.3   0.0   0.00012     0.071     193     257 ..     262     327 ..     251     328 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.52
    TIGR03611  82 ahvvGhalGgliglelalr 100
                  + v G +lGg +++ela  
  MMETSP1061-20121228|21490_1 130 FCVAGASLGGAASIELAAA 148
                  6688999*********975 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00012
    TIGR03611 193 rldriklpvlli.aakDDlLvPytqsseLaekLPdaelklleyGghasnvtdpetfnellldfLas 257
                  ++ +i+ p l++   +D +L  +  ++++ e+L daelk +e  gh   + +p +  +++++fL+s
  MMETSP1061-20121228|21490_1 262 KVPKIESPALVLwGRQDGILDGTEFANKFVEELQDAELKWIEECGHVPHLEQPLETASTIVSFLTS 327
                  5667888877651677889999******************************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1891.84
//
Query:       MMETSP1061-20121228|21530_1  [L=942]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (942 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.34
# Mc/sec: 3656.87
//
Query:       MMETSP1061-20121228|21553_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|21554_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1078.67
//
Query:       MMETSP1061-20121228|21606_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-98  328.6  10.9    1.3e-57  193.3   1.7    2.0  2  TIGR00834 ae: anion exchange protein


Domain annotation for each model (and alignments):
>> TIGR00834  ae: anion exchange protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.6   1.0   2.8e-45   1.1e-41     347     510 ..      84     249 ..      40     261 .. 0.91
   2 !  193.3   1.7   3.2e-61   1.3e-57     562     876 ..     261     571 ..     248     574 .. 0.93

  Alignments for each domain:
  == domain 1    score: 140.6 bits;  conditional E-value: 2.8e-45
    TIGR00834 347 GlirDikrryphylsDltDaln..lqvlaavifiyfaalspaitfGGLLgektenlmgvselllstavqgvlfallaaqPllvvgfsGPlLvfeealfkfcksneleylvgrvWiglWlvllvlllvavegsfLvryisrftqeifsfLislifiyetfsklikif 510
                   +i+Di rr + y+sD tD ++   +v+ av+f+yfa lspai fG + ++ t++ +gv+e lls+  +g++++++++qP+  ++ +G  L f   lf++c  ++l ++    W+glW+  +  ll    +s L+ry +rft+e+f  L+s+ fiye+++ l + f
  MMETSP1061-20121228|21606_1  84 VMIKDIERRKKCYVSDWTDGFKnlKKVIPAVLFLYFACLSPAISFGTIASQITNDSIGVVEFLLSAGGSGMVYSIICGQPMAFIAPTGLTLAFISGLFRYCTLKGLPFFPVYSWVGLWTSCFFTLLGLGGSSQLIRYCTRFTDEVFNALLSITFIYEAVNSLKRSF 249
                  59*******************84458*************************************************************************************************************************************9998765 PP

  == domain 2    score: 193.3 bits;  conditional E-value: 3.2e-61
    TIGR00834 562 LlslvLmlGtfllalflrkfknsrylpgkvrrligDfgvpisilimvlvDi..likdvytqkLsvPsglkvtspeargWfipPlgekkpfpvWmmlaaalPalLvliLiflesqittlivskkerklkkGsGfhLDLllvvalgglaallglPwlsaatvrsvthinaLtveskasaPGekakiqevkeqrvtGllvavlvGlsillepiLkriPlavLfGifLymGvtsLsGiqlfdrllLllmPlkyqPdviyvkrvktrrihlftllqilclalLWvvkst.aaslalPfvliltvplrklllpklfsekelklL 876
                  ++ l + l tf  +     f +s++l  ++rr + +fg +i  + m  ++   ++++ + + LsvP+ ++ +    r +fi P+++    p  + l++ lPa+L   L f+++ i   +v+++++klkkG  + LD++ ++ ++g+ ++lglPw+  atv+s++h++aLt         e+ +i++v e r+tG lv +l+  s+ll p+++ iP++v+ G+fL++G   ++G  +f+r++  ++ +k   d+  ++    +r  +ft +q+lcl  LW  k   ++++ +P  + +++ +r+ +lpklf e+el  L
  MMETSP1061-20121228|21606_1 261 FVGLAMALCTFRATDEASAFDSSKFLNQTIRRFVKNFGPVIIFVAMSAINSvpTVSKFNVPTLSVPDHFQLAGG--RNFFI-PINSI---PNRVKLLCSLPAMLLSALFFMDQNISVRVVNNPDNKLKKGPAYNLDMVALGLITGVLSVLGLPWMCGATVQSMNHVKALTDSVYNPE-TEEIEIVDVTETRLTGFLVHALIAGSLLLLPVVRLIPIPVVSGVFLFLGRKLMKGNSFFQRIRDTFVEKKRLLDDNPIRMLGRKRTAIFTGIQLLCLMGLWGFKENpSTAIFFPSAIGMLMVIRNSVLPKLFDEEELVEL 571
                  5667788889999999999*******************99999999999973459999***********99765..68888.77776...*******************************************************************************96655544.4899****************************************************************************************************997899**************************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.27
# Mc/sec: 2820.66
//
Query:       MMETSP1061-20121228|21627_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1492.05
//
Query:       MMETSP1061-20121228|21634_1  [L=777]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-07   26.7   2.9    9.2e-06   22.3   0.0    2.7  3  TIGR02289 M3_not_pepF: oligoendopeptidase, M3 family
    0.00011   19.1   7.0      0.046   10.4   1.4    3.1  3  TIGR00181 pepF: oligoendopeptidase F


Domain annotation for each model (and alignments):
>> TIGR02289  M3_not_pepF: oligoendopeptidase, M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   4.5e-09   9.2e-06     149     227 ..     307     385 ..     296     399 .. 0.76
   2 !    3.8   0.0    0.0018       3.7     331     352 ..     554     575 ..     547     607 .. 0.76
   3 ?   -2.8   0.0      0.18   3.7e+02     376     404 ..     644     672 ..     643     678 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 4.5e-09
    TIGR02289 149 lkpyLq.dsdRstRkkAkealsef.laeveeeldriydeLvkvRtkiAknlgfeNyvdlayklleRtdYsaedvakyresv 227
                  ++p+L  +s R+ Rk A++a +     +   +   i  e+ k+R+k+Ak  g++N+ +++ +  +R+  ++e+v ++ e+v
  MMETSP1061-20121228|21634_1 307 VEPFLTfSSRRDLRKTAWKAWTSRgELDPDRDNLSIATEILKLRQKQAKLHGYKNFAEYQCA--DRMLKTPEKVIDLLENV 385
                  677776467899*******976541444444445799********************99754..55556777777777776 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0018
    TIGR02289 331 fngtsgdidvliHEvGHafqvy 352
                     +++d  +l+HE+GH  +  
  MMETSP1061-20121228|21634_1 554 TLLSFDDATTLFHEMGHGHHGM 575
                  556789***********98864 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 0.18
    TIGR02289 376 slEllsleyldlFykdeedlkkakiselk 404
                  ++E+ +   ld  +++ ed++ + +s+++
  MMETSP1061-20121228|21634_1 644 TIEFTACALLDMLFHQVEDYDDFDVSAFE 672
                  68999999**************9999886 PP

>> TIGR00181  pepF: oligoendopeptidase F
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.2   0.0    0.0065        13      86     161 ..     234     308 ..     205     314 .. 0.89
   2 !    9.1   0.1   5.4e-05      0.11     187     273 ..     300     388 ..     281     397 .. 0.69
   3 !   10.4   1.4   2.3e-05     0.046     375     422 ..     558     606 ..     553     713 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0065
    TIGR00181  86 alsqklsalytkvesalsflepeileieeekikewlkdselakykialeellrkkkHvLseeeeklLsklsevlss 161
                  +++q+   +++k++s ++ +++++l+ ee + + +lk+ +l     +l e+ ++ +  +++ +++++++ls+ l +
  MMETSP1061-20121228|21634_1 234 ENQQENADIEAKLASLITEFSQNVLKDEE-TYELVLKRDDLTGCPDSLVEAAKNAAEERNKADDEYVITLSRSLVE 308
                  55677788999999************999.*************************************999997765 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 5.4e-05
    TIGR00181 187 kplknstyekvleknkdreiRkkayesfykaykkskntlaall.aaevkknkalaklrnyesvieaslfsd..evdkevydnlldtvkkn 273
                  + l+ s  e +l  +  r++Rk+a++++ +  +   +     + ++ +k  +++akl++y++  e++ ++   + +++v+d l + v ++
  MMETSP1061-20121228|21634_1 300 ITLSRSLVEPFLTFSSRRDLRKTAWKAWTSRGELDPDRDNLSIaTEILKLRQKQAKLHGYKNFAEYQCADRmlKTPEKVIDLL-ENVWEK 388
                  44566778889999**************98765544444444405566667889***********999887335577777644.444444 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 2.3e-05
    TIGR00181 375 lndvftLvHElGHsvhslfsskeqpyslseysif.laEvaStfNellla 422
                   +d+ tL HE+GH  h ++s+ +   + s   +  ++E +S   e+ l 
  MMETSP1061-20121228|21634_1 558 FDDATTLFHEMGHGHHGMLSNCNYGRLASTNVLQdFVELPSQLMEHWLE 606
                  57899***************99875554443332367888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.40
# Mc/sec: 2563.89
//
Query:       MMETSP1061-20121228|21637_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1614.33
//
Query:       MMETSP1061-20121228|21654_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2955.61
//
Query:       MMETSP1061-20121228|21660_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1799.85
//
Query:       MMETSP1061-20121228|21672_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0086   13.0   0.2     0.0086   13.0   0.1    1.0  1  TIGR00896 CynX: cyanate transporter


Domain annotation for each model (and alignments):
>> TIGR00896  CynX: cyanate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   2.1e-06    0.0086      92     135 ..      13      55 ..       3      79 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.1e-06
    TIGR00896  92 agtalagvgiaiinvllPslikrkfpervglltglyslalalga 135
                   +++++g gi+++  l+P+l+   f ++ g+ ++ y+  +a+g 
  MMETSP1061-20121228|21672_1  13 VASLVMGFGISVMYSLIPGLVGSAFGRHRGSYIA-YTDGVAFGV 55 
                  5899***********************9999884.776666653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 509.10
//
Query:       MMETSP1061-20121228|21675_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 403.30
//
Query:       MMETSP1061-20121228|21694_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 540.53
//
Query:       MMETSP1061-20121228|21688_1  [L=570]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.2   0.0      0.045   10.6   0.0    1.2  1  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.1e-05     0.045      86     157 ..     230     305 ..     155     324 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.1e-05
    TIGR03866  86 elfvlepdgkllyianeddalvtvvdiekrkvlaeidvGvePe...GlavsPdgklvvntse.ttnmahfidtetl 157
                    + l +dg  l +a  + ++v v d+++++ + e   Gve      +a s d +++   s+  t  + ++d+++ 
  MMETSP1061-20121228|21688_1 230 RALQLTADGSKLATASHKGTIVRVFDVATSQKIYEFRRGVERAnitCIAFSYDDQWIGCSSDkGTTHIFYLDQHKS 305
                  3456778999999999999999999999999999999999976222568899999987777524666777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (570 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 2279.81
//
Query:       MMETSP1061-20121228|21700_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1213.04
//
Query:       MMETSP1061-20121228|21698_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1592.97
//
Query:       MMETSP1061-20121228|21702_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1869.85
//
Query:       MMETSP1061-20121228|21696_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-61  204.4   0.0    8.8e-61  203.0   0.0    1.7  1  TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
    0.00021   19.1   0.0    0.00044   18.1   0.0    1.7  1  TIGR03310 matur_ygfJ: molybdenum hydroxylase accessory protein, YgfJ family
    0.00091   16.0   0.0     0.0013   15.5   0.0    1.4  1  TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
     0.0012   16.7   0.0     0.0022   15.9   0.0    1.4  1  TIGR02665 molyb_mobA: molybdopterin-guanine dinucleotide biosynthesis protein A
  ------ inclusion threshold ------
      0.012   12.3   0.1       0.25    8.0   0.0    2.1  2  TIGR03992 Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00453  ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.0   0.0   1.1e-63   8.8e-61       3     219 .]      55     286 ..      53     286 .. 0.91

  Alignments for each domain:
  == domain 1    score: 203.0 bits;  conditional E-value: 1.1e-63
    TIGR00453   3 vilAAGrgeRlgskvpKqylelagkplllhalealla...........seavkevvvvvseedeellqkalkaka.evklvkGGetRqeSVlngLkale....adaeiVlvhDaARplvkkelldrllealekaakaailalpvaDTlkrveadgkvvetvdReklwavqTPQlfrtelLlkalarakaegleitDdaslveklGlkvklvegdeenlKiTtpeDLalaeall 219
                  v+lA+G g+R+++++pKqyl+l g p+l h+l+ +l+               ++vv+v++++++ ++q+ +++    ++++++Ge+Rq SV ngL++l       +++V vhD+ARplv+ e++ ++++ +++ ++aa+l +p++ T+k++e   +v++t++R++lw v+TPQ++r e Llk++++ ++e+le+tDd s++e+lG +vkl  g+++nlKiTtpeD+ +aea+l
  MMETSP1061-20121228|21696_1  55 VLLAGGTGSRMKANMPKQYLPLRGVPVLHHSLDLFLEklvdhckssgdTSPPENVVLVMDPKYQPEYQAIVDRYPgRLEFANPGEERQGSVENGLNKLVemskGRCQFVAVHDSARPLVTIEEICSVVKDAKE-HGAAVLGVPCKATIKESEDGSFVQRTIERSRLWEVHTPQVIRIENLLKGFKKVAEENLEVTDDVSVIEQLGEPVKLTRGEYTNLKITTPEDMDVAEAIL 286
                  99*******************************998722211111111223468***************99776699*******************9988887889***************************.99**************99888***************************************************************************986 PP

>> TIGR03310  matur_ygfJ: molybdenum hydroxylase accessory protein, YgfJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   5.3e-07   0.00044       3      41 ..      55      95 ..      53     187 .. 0.94

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 5.3e-07
    TIGR03310  3 iilAaGlssRMGkn..KllLplkgktileevvenvlelafd 41
                 ++lA+G++sRM +n  K+ Lpl+g ++l ++++ +le  +d
  MMETSP1061-20121228|21696_1 55 VLLAGGTGSRMKANmpKQYLPLRGVPVLHHSLDLFLEKLVD 95
                 899********98767*****************99988766 PP

>> TIGR01173  glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.5e-06    0.0013       4      37 ..      55      88 ..      52     199 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.5e-06
    TIGR01173  4 viLAAGkGtRmkSklpKvLhelagkpmlehviea 37
                 v+LA G G Rmk ++pK   +l g p+l+h ++ 
  MMETSP1061-20121228|21696_1 55 VLLAGGTGSRMKANMPKQYLPLRGVPVLHHSLDL 88
                 89***************************98875 PP

>> TIGR02665  molyb_mobA: molybdopterin-guanine dinucleotide biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   2.7e-06    0.0022       3      35 ..      54      87 ..      52      96 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 2.7e-06
    TIGR02665  3 gviLAGGrarRMgge.dKglvelrgkpLiehvle 35
                  v+LAGG ++RM  +  K  ++lrg p+++h l+
  MMETSP1061-20121228|21696_1 54 FVLLAGGTGSRMKANmPKQYLPLRGVPVLHHSLD 87
                 599*********87548*************9887 PP

>> TIGR03992  Arch_glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00031      0.25       4      40 ..      55      88 ..      52      97 .. 0.87
   2 ?    2.0   0.0      0.02        16     172     233 ..     230     291 ..     225     296 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00031
    TIGR03992  4 vilaAGkGeRlrPltetrpKvllpvagkpllehliea 40
                 v+la G G+R++   ++ pK+ lp+ g p+l+h+++ 
  MMETSP1061-20121228|21696_1 55 VLLAGGTGSRMK---ANMPKQYLPLRGVPVLHHSLDL 88
                 89*********8...79****************9875 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.02
    TIGR03992 172 ifellekvklSeRgElEltdalkalieeek.vkaveldekWldvgrPWdlleanealleklke 233
                  i +ll+  k+   ++lE+td ++ + + ++ vk ++ + + l +  P d +++ ea+le+ k+
  MMETSP1061-20121228|21696_1 230 IENLLKGFKKVAEENLEVTDDVSVIEQLGEpVKLTRGEYTNLKITTPED-MDVAEAILEERKS 291
                  667788888889999********99999999**99999999******88.5888998887664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.31
# Mc/sec: 1268.80
//
Query:       MMETSP1061-20121228|21719_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 505.00
//
Query:       MMETSP1061-20121228|21711_1  [L=1060]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1060 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.43
# Mc/sec: 3253.68
//
Query:       MMETSP1061-20121228|21762_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0041   14.4   0.0     0.0046   14.2   0.0    1.1  1  TIGR00436 era: GTP-binding protein Era


Domain annotation for each model (and alignments):
>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.1e-06    0.0046      50      95 ..       2      51 ..       1      68 [. 0.74

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.1e-06
    TIGR00436 50 iifiDtPGlhek....khklnellvkeirkalsevdlilfvvdsdeknke 95
                 i+f DtPG+         +l + l   + + +++vd  l+v+ds +k  +
  MMETSP1061-20121228|21762_1  2 IVFKDTPGFLRIenakEERLDRDLIATAASEMQDVDFTLLVLDSARKLSD 51
                 89******96531111445566677788899*************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 653.35
//
Query:       MMETSP1061-20121228|21780_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-06   22.9   5.8    9.5e-06   22.9   4.0    1.4  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.9   4.0   2.3e-09   9.5e-06      19      65 ..      32      79 ..      25     119 .. 0.90

  Alignments for each domain:
  == domain 1    score: 22.9 bits;  conditional E-value: 2.3e-09
    TIGR00599 19 sLapldtslRChvCkdffkaPv.ltsCsHtFCslCiRrcLseepkCPl 65
                 s+ ++ + l C +C+  f+ P  l +C+HtFC  C+  +  +++ CP+
  MMETSP1061-20121228|21780_1 32 SISNFASFLICPLCNKIFDRPAtLSACAHTFCTNCVDGYSANNSVCPA 79
                 667888999************54899*********************7 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1283.89
//
Query:       MMETSP1061-20121228|21776_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-14   51.2   0.0    9.1e-09   32.9   0.0    2.4  2  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      1e-13   48.9   0.2    9.6e-09   32.5   0.0    2.4  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
      6e-13   46.6   0.0    3.2e-08   31.1   0.0    2.4  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
      8e-13   45.3   0.4    4.9e-07   26.2   0.0    2.1  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    4.1e-11   40.0   0.0    4.4e-05   20.1   0.0    2.3  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
      7e-11   38.9   0.0    1.9e-08   30.9   0.0    2.2  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    9.1e-11   38.8   0.1    8.2e-05   19.1   0.1    2.2  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      1e-10   38.3   1.4    4.7e-05   19.6   0.0    2.1  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.6e-10   38.7   0.0    3.1e-05   21.4   0.0    2.5  2  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    2.1e-10   38.4   0.0    0.00025   18.6   0.0    2.3  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    4.5e-10   37.3   0.0    0.00026   18.4   0.0    2.5  2  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.1e-09   35.1   0.5    0.00018   18.0   0.8    2.1  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    1.5e-09   35.2   0.0    6.6e-05   20.1   0.0    3.2  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    2.3e-09   34.1   0.1    0.00076   15.9   0.2    2.2  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    4.6e-09   34.1   0.0    0.00048   17.7   0.0    2.4  2  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    5.9e-09   33.4   0.0     0.0012   16.0   0.0    2.3  2  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    6.5e-09   33.2   0.0    0.00046   17.3   0.0    2.2  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.2e-08   32.5   0.0    4.7e-05   20.6   0.0    2.7  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.3e-08   31.5   0.1    1.5e-05   22.3   0.0    2.6  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.5e-08   30.8   0.0    0.00027   17.5   0.0    2.3  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    5.9e-08   30.2   0.3      0.003   14.9   0.0    2.6  2  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    7.2e-08   29.7   0.0    2.8e-05   21.2   0.0    2.5  2  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    8.1e-08   29.7   0.7    0.00011   19.4   0.0    2.8  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    9.3e-08   29.8   0.0    0.00011   19.7   0.0    2.3  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      1e-07   29.6   0.2      0.036   11.4   0.0    3.3  3  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      2e-07   28.2   0.0     0.0027   14.6   0.0    3.1  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    4.6e-07   27.6   0.0     0.0068   14.0   0.0    2.3  2  TIGR00960 3a0501s02: type II secretory pathway family protein
    5.7e-07   27.0   0.3    0.00079   16.7   0.0    2.4  2  TIGR01978 sufC: FeS assembly ATPase SufC
    6.8e-07   26.4   0.0     0.0022   14.9   0.0    2.3  2  TIGR01288 nodI: nodulation ABC transporter NodI
    7.5e-07   26.8   0.1    0.00041   17.8   0.0    2.6  2  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
      9e-07   26.6   0.0     0.0013   16.3   0.0    2.4  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.7e-06   24.8   0.0    0.00045   16.8   0.0    2.2  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.9e-06   25.4   0.0     0.0077   13.5   0.0    2.3  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.7e-06   25.0   0.0      0.014   12.9   0.0    2.6  2  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    4.1e-06   23.9   0.0     0.0015   15.4   0.0    2.7  3  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.2e-06   23.9   0.1    0.00077   16.5   0.0    2.5  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    7.9e-06   22.9   0.0      0.038   10.8   0.0    2.7  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      1e-05   23.0   0.1      0.019   12.3   0.0    2.8  2  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.1e-05   22.0   0.1     0.0035   13.8   0.0    2.3  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    1.7e-05   22.3   0.0      0.085   10.2   0.0    2.5  2  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      2e-05   21.2   0.0      0.011   12.2   0.0    2.6  2  TIGR00955 3a01204: pigment precursor permease
    3.1e-05   21.6   0.1     0.0027   15.2   0.0    2.3  2  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    4.2e-05   21.1   0.0       0.25    8.7   0.0    3.2  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    0.00067   16.0   0.1      0.065    9.5   0.0    2.2  2  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
  ------ inclusion threshold ------
      0.015   12.6   0.0        2.6    5.2   0.0    2.6  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
      0.019   11.2   2.8       0.15    8.3   0.0    2.8  4  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter


Domain annotation for each model (and alignments):
>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.9e-05    0.0017      18      50 ..     450     481 ..     434     491 .. 0.74
   2 !   32.9   0.0     1e-10   9.1e-09     121     191 ..     631     704 ..     617     712 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.9e-05
    TIGR03864  18 ddvsltvakgefvaLLGpnGaGkstLfslltrL 50 
                  +  +l+++ g + aL G nG+GkstLf ++ + 
  MMETSP1061-20121228|21776_1 450 KIDNLELSAG-IYALTGANGSGKSTLFRVIMGC 481
                  3336888889.9*****************9875 PP

  == domain 2    score: 32.9 bits;  conditional E-value: 1e-10
    TIGR03864 121 glaeraeekvreLnGGhrrrveiarall...hePklLLlDeatvGLDiesraalveevrelvreeglsvLWath 191
                  +l + +++  ++L+GG+r +ve++r +      P++LL+De+ + LD++s+a +++++++ ++ + + v++ t 
  MMETSP1061-20121228|21776_1 631 ELVDVKDDWFNDLSGGQRSKVELVRKVFlmdECPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIYHTD 704
                  56777888999**************86522335******************************99999999886 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   5.6e-05     0.005     321     371 ..     434     481 ..     403     498 .. 0.73
   2 !   32.5   0.0   1.1e-10   9.6e-09     457     517 ..     641     704 ..     623     709 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.6e-05
    TIGR02857 321 slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklllgf 371
                   + ++n+ ++   ++  +++++l  ++  ++al+Ga G+GKstl ++++g 
  MMETSP1061-20121228|21776_1 434 LVAFQNIAYSRGTASVKIDNLEL--SA-GIYALTGANGSGKSTLFRVIMGC 481
                  56677776665544455555555..44.489*****************996 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.1e-10
    TIGR02857 457 agLSgGqrqRlaLAr.allrda..pllllDEPtahLDaeteaevlealrelaegrtvllvaHrl 517
                  + LSgGqr ++ L r ++l d+  ++ll+DE  a LD++++a v++++++++ g +v+++ H +
  MMETSP1061-20121228|21776_1 641 NDLSGGQRSKVELVRkVFLMDEcpHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIYHTD 704
                  67***********98568887789**************************************86 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   0.00014     0.012       9      51 ..     440     481 ..     434     495 .. 0.87
   2 !   31.1   0.0   3.6e-10   3.2e-08     135     200 ..     632     700 ..     623     708 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00014
    TIGR02315   9 kvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrl 51 
                    y+ g++++k  nle++ G + a+ G  G+Gkstl+r i + 
  MMETSP1061-20121228|21776_1 440 IAYSRGTASVKIDNLELSAG-IYALTGANGSGKSTLFRVIMGC 481
                  57999999999999**9998.89***************99765 PP

  == domain 2    score: 31.1 bits;  conditional E-value: 3.6e-10
    TIGR02315 135 laelaakradqLsGGqqqRvaiaRa..laqq.pklilaDEPiasLDpksskqvmdllkrinkekgitvi 200
                  l ++++   ++LsGGq+ +v + R   l+++ p+++l+DE +a LDp+s   vm+++k+ +  + ++vi
  MMETSP1061-20121228|21776_1 632 LVDVKDDWFNDLSGGQRSKVELVRKvfLMDEcPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVI 700
                  55666677889*************8335554499***************************87666555 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.3   3.6e-06   0.00032     344     516 ..     305     481 ..     231     486 .. 0.71
   2 !   26.2   0.0   5.4e-09   4.9e-07     603     660 ..     642     702 ..     636     705 .. 0.90

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 3.6e-06
    TIGR03375 344 aesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviL.sgRalaPlaqlaglltr.......yqqaktalesldelmklpvereeekrllsreklkGe....ielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllgl 516
                  a + ++++W +++ ++ ++++ + +l++ +  + +++q       v+v     +++ ++ G ++Aa i   +Ra+   + +  + +r       + +  + l++l ++ k+ +er+     l  ++ + +    ++++n+ +    + +a++k  +l++++G   a+ G +GsGKstl ++++g 
  MMETSP1061-20121228|21776_1 305 AMEFTRQRWLELTVKV-QMKMAVSTLTSRTKGFFSFIQRNFVFS-VLVD--CALAQLMAAGKIVAADIFvFSRAIEDAVDMILMRSRseaelarMMTQISNLRELSTVWKTAKERKLFPCSLMSSRTNDSsealVAFQNIAY---SRGTASVKIDNLELSAGI-YALTGANGSGKSTLFRVIMGC 481
                  5555667777766554.456777778888888888887655444.4443..467899*********986269***9988877775551111000444445566666667777777655555544444443111144444443...578999***********6.69*****************96 PP

  == domain 2    score: 26.2 bits;  conditional E-value: 5.4e-09
    TIGR03375 603 sLSgGQrqavalaRall.kd..ppillLDEPtsalDnsseekllerLkelladkTlvlvtH 660
                   LSgGQr  v l R +  +d  p+ill+DE  + lD +s + +++++k+++a+  ++++ H
  MMETSP1061-20121228|21776_1 642 DLSGGQRSKVELVRKVFlMDecPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIYH 702
                  79************765233459************************************99 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   4.9e-07   4.4e-05     278     376 ..     387     486 ..     371     510 .. 0.72
   2 !   17.4   0.0   3.1e-06   0.00028     143     215 ..     625     700 ..     554     706 .. 0.68

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 4.9e-07
    TIGR03719 278 spkarqakskarlaryeela...seesekkeetaeivippgerlGdkvievenlskafgd.klliddlsfklpkggivGviGpnGaGkstlfklitgkekpds 376
                   ++a  a+  +++++  el+   ++++e+k    +++ + ++   + ++ ++n++ + g   + id+l+++   +gi  + G+nG+Gkstlf++i+g +++d+
  MMETSP1061-20121228|21776_1 387 RSEAELARMMTQISNLRELStvwKTAKERKLFPCSLMSSRTNDSSEALVAFQNIAYSRGTaSVKIDNLELS---AGIYALTGANGSGKSTLFRVIMGCDTNDR 486
                  45555555555566655554111344444444557777777778888999999998887625679999875...799********************999886 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 3.1e-06
    TIGR03719 143 leiamdalrlpeedakveklsGGekrrvalcr..lll.ekPdlllldePtnhldaesvaWlekflkey.kGtvvavt 215
                  +   m+ l +  +d   ++lsGG++ +v l+r  +l+ e P +ll+de    ld  s a +   +k++ +G+vv+v 
  MMETSP1061-20121228|21776_1 625 ITRIMEEL-VDVKDDWFNDLSGGQRSKVELVRkvFLMdECPHILLVDETMAPLDPRSKALVMSQIKSFcAGSVVIVI 700
                  44455555.445667789************9854233367********************99999999568888875 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0077      0.69     453     504 ..     432     479 ..     311     487 .. 0.82
   2 !   30.9   0.0   2.1e-10   1.9e-08     593     650 ..     642     702 ..     622     705 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0077
    TIGR01846 453 kGaiefenirfrykedspev.lsnlsldikaGeviGivGpsGsGkstltkllq 504
                  +  + f+ni   y++ +++v ++nl  ++ aG +  ++G  GsGkstl +++ 
  MMETSP1061-20121228|21776_1 432 EALVAFQNIA--YSRGTASVkIDNL--ELSAG-IYALTGANGSGKSTLFRVIM 479
                  5557777776..5555555525555..55566.5689***********99875 PP

  == domain 2    score: 30.9 bits;  conditional E-value: 2.1e-10
    TIGR01846 593 alsGGqrqrialara..lvan.Prilildeatsaldyeseavimrnlreickgrtviiiah 650
                   lsGGqr ++ l r   l+ + P+il++de+ + ld  s a++m+++++ c+g  vi+i h
  MMETSP1061-20121228|21776_1 642 DLSGGQRSKVELVRKvfLMDEcPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIYH 702
                  79***********973244436*************************************99 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   9.2e-07   8.2e-05     343     504 ..     307     483 ..     302     487 .. 0.60
   2 !   17.1   0.0   3.6e-06   0.00032     587     641 ..     641     698 ..     618     702 .. 0.87

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 9.2e-07
    TIGR03797 343 efseqrklelkaq.riedlltvlnavlpvltsavlfalaisll.........aaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepEvdeekvdpgkLsGaievdr....vtFr...YekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFek 504
                  ef++qr+lel+++ +++ ++++l++  + ++s +   ++ s+l         aa k+ +++   f+ a+  ++  ++  +++  e+ +++ + + ++ + +  + ++e+k  p +L+ + + d+    v F+   Y++ ++ v +  +l+ ++G + a+ Ga GsGKStl+r+++g ++
  MMETSP1061-20121228|21776_1 307 EFTRQRWLELTVKvQMKMAVSTLTSRTKGFFSFIQRNFVFSVLvdcalaqlmAAGKIVAADIFVFSRAIEDAVDMILMRSRSEAELARMMTQISNLRELSTVWKTAKERKLFPCSLMSSRTNDSsealVAFQniaYSRGTASV-KIDNLELSAGIY-ALTGANGSGKSTLFRVIMGCDT 483
                  56777766665542455555555544444333333222222222222222226777777777779999999999988888877777777777776666666666666777777777654433322222555322265544443.444677888988.9******************987 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 3.6e-06
    TIGR03797 587 gtlSGGQrQRlliAralv...rkPrillfDEATSALDNrtQaiVsesleklkvtRivi 641
                  + lSGGQr ++ + r +    + P+ill+DE    LD r++a+V+  ++ + +  +vi
  MMETSP1061-20121228|21776_1 641 NDLSGGQRSKVELVRKVFlmdECPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVI 698
                  679********998876523357**************************999998887 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5   2.8e-06   0.00025     281     528 ..     231     481 ..     210     486 .. 0.60
   2 !   19.6   0.0   5.2e-07   4.7e-05     614     668 ..     641     700 ..     604     709 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 2.8e-06
    TIGR03796 281 vvfyalvmllydlvlaliaialaa...invlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGy.qakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeelee.........eeekaaeseek........ekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGl 528
                  v++  +vm    +++a i   + +   ++  a+++++++ +++++ +q+ ++  + v    l++ e l  sg+ +  f+r   +  +  ++++ ++ + t + + + ++   +++  +  v     l   ++ G +va    +  f++ +e+ v+++      ea+l+r+   ++n ++ ++                                 +  v ++n+ ++  +  +  i++++l  + G   Al G+ GsGkst+ +++ G 
  MMETSP1061-20121228|21776_1 231 VLLLPVVMSRQPKMIAQIFPIIFIsdwLKGRAVSYMTNRVEELEKDIQELNAVRSKVESYDLKNSELLHRSGSGAMEFTRQRWLeLTVKVQMKMAVSTLTSRTKGFFSF---IQRNFVFSVLVDCALAQLMAAGKIVAADIFV--FSRAIEDAVDMILMRSRSEAELARMMTQISNLRELSTVWktakerklfP---------CslmssrtnDSSEALVAFQNIAYSRGTA-SVKIDNLEL--SAGI-YALTGANGSGKSTLFRVIMGC 481
                  5555566666666666554333330014444566666666677777777777777788888999999999999888777654330233445555555555555555444...5555555555555667789999999988654..6677777777776666666666666554444444433221111222210.........1122222336778889999998775544.445777665..5664.6*****************995 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 5.2e-07
    TIGR03796 614 anlsGGqrqRleiARa..Lv.knPsiLilDEatsaLDaetEkaidenlrrR..gctciiv 668
                  ++lsGGqr ++e+ R   L+ + P iL++DE+ + LD++    ++++++    g  +i++
  MMETSP1061-20121228|21776_1 641 NDLSGGQRSKVELVRKvfLMdECPHILLVDETMAPLDPRSKALVMSQIKSFcaGSVVIVI 700
                  569************73333267*************************985113444444 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   4.4e-05     0.004      17      52 ..     452     486 ..     438     500 .. 0.86
   2 !   21.4   0.0   3.5e-07   3.1e-05     133     193 ..     641     703 ..     627     710 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 4.4e-05
    TIGR03608  17 lslkiekGelvaivGesGsGKstlLnilgllekkds 52 
                   +l++++G ++a++G  GsGKstl  ++   ++ d+
  MMETSP1061-20121228|21776_1 452 DNLELSAG-IYALTGANGSGKSTLFRVIMGCDTNDR 486
                  56777777.89****************999988775 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 3.5e-07
    TIGR03608 133 yelsgGekqRvalar.ill.ke.selilADEPtgsLDkknreevlellkelkeegktiiivtHd 193
                   +lsgG++ +v l+r + l  e ++++l DE  + LD+++++ v++ +k+   +g ++i++ H 
  MMETSP1061-20121228|21776_1 641 NDLSGGQRSKVELVRkVFLmDEcPHILLVDETMAPLDPRSKALVMSQIKSFC-AGSVVIVIYHT 703
                  58**********998433414436899********************99986.57777777775 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   7.1e-06   0.00064       3      49 ..     437     481 ..     435     489 .. 0.80
   2 !   18.6   0.0   2.7e-06   0.00025     116     190 ..     631     707 ..     622     711 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 7.1e-06
    TIGR01189   3 aeelaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGL 49 
                   +++a++Rg+  +  + ++el+aG + +++G nG+GK+tL R++ G 
  MMETSP1061-20121228|21776_1 437 FQNIAYSRGTASVKID-NLELSAG-IYALTGANGSGKSTLFRVIMGC 481
                  5788889988776433.6778888.6799***************996 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 2.7e-06
    TIGR01189 116 gLsgledlpvaqLsAGqkrRlalar...LllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdlgl 190
                  +L +++d  ++ Ls Gq+ ++ l r   L+ +   + ++DE ++ lD ++ +l+++++++ +a g +v++  h+d+g 
  MMETSP1061-20121228|21776_1 631 ELVDVKDDWFNDLSGGQRSKVELVRkvfLMDECPHILLVDETMAPLDPRSKALVMSQIKSFCA-GSVVIVIYHTDVGR 707
                  588999999**************9865344445678999********************9986.77888888998876 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   1.4e-05    0.0013      17      53 ..     450     485 ..     435     490 .. 0.77
   2 !   18.4   0.0   2.9e-06   0.00026     119     166 ..     631     681 ..     617     704 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.4e-05
    TIGR00968  17 ddvdlevktGslvallGpsGsGkstllrviaGlekpd 53 
                  +  +le+  G + al G  GsGkstl+rvi G + +d
  MMETSP1061-20121228|21776_1 450 KIDNLELSAG-IYALTGANGSGKSTLFRVIMGCDTND 485
                  3335676666.789******************99987 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.9e-06
    TIGR00968 119 qleklgdrypsqlsGGqrqrvalaralav.e..pqvllldepfgaldakvr 166
                  +l +++d + ++lsGGqr +v l r + + +  p++ll+de ++ ld + +
  MMETSP1061-20121228|21776_1 631 ELVDVKDDWFNDLSGGQRSKVELVRKVFLmDecPHILLVDETMAPLDPRSK 681
                  57889999*****************875423569************97754 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.8     2e-06   0.00018     169     379 ..     260     478 ..     242     483 .. 0.75
   2 !   14.4   0.0   2.5e-05    0.0022     470     527 ..     642     702 ..     610     705 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2e-06
    TIGR02203 169 allvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkva..sasslssplvqlias.valavvllialvq.aqagaltvGelvafitamlalikplksLtnvsaklqkglaaae...svfallDsppekd......eGtralervrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnll 379
                  + +v+++++r+ +++k+iq++++   kv +  l++   ++  g+ ++e  R   ++ + +++++k+a  + +s ++ +  +i     ++v++  al q   ag++ + ++ +f  a+   ++ +   +  +a+l ++++      ++ ++  +++e+          r+ +  +  v f+n+ +  + ++++ +d+  l+++aG + al G  GsGkstl +++
  MMETSP1061-20121228|21776_1 260 GRAVSYMTNRVEELEKDIQELNAVRSKVESYDLKNSELLHRSGSGAMEFTRQRWLELT-VKVQMKMAvsTLTSRTKGFFSFIQRnFVFSVLVDCALAQlMAAGKIVAADIFVFSRAIEDAVDMILMRSRSEAELARMMTQISnlrELSTVWKTAKERKlfpcslMSSRTNDSSEALVAFQNIAYSRGTASVK-IDN--LELSAG-IYALTGANGSGKSTLFRVI 478
                  457899*********************************9999988888776655543.4455555510556777888888875166788888888872457899999999**999999999998888888888888776651115667788888877333333467788889999*****99765444443.455..555666.78*************9877 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 2.5e-05
    TIGR02203 470 kLsGGqRqRlaiaRal..lkdaP.iLiLDeatsaLDneseRlvqaaLerlmkgRttlviah 527
                   LsGGqR ++ + R +  + + P iL++De  + LD  s  lv   ++ +  g   +vi h
  MMETSP1061-20121228|21776_1 642 DLSGGQRSKVELVRKVflMDECPhILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIYH 702
                  69************75225678879999*************************99999998 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.44        39     132     186 ..     191     249 ..     138     254 .. 0.79
   2 !    9.7   0.0    0.0011     0.094      29      53 ..     461     485 ..     438     518 .. 0.75
   3 !   20.1   0.0   7.4e-07   6.6e-05     135     197 ..     631     696 ..     623     710 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.44
    TIGR03005 132 dmvGladkadalpaqlsGGqkqrvaia.....ralalrpkvllfdevtsaldpelveevl 186
                  ++v lad   + pa +sG     v+ +     r l   pkvll+  v s  +p+++ +++
  MMETSP1061-20121228|21776_1 191 HLVALADHSAKAPADFSGYMDTIVTTTyelfnRKLFSLPKVLLLPVVMS-RQPKMIAQIF 249
                  3799**************9999887542222277778899999887766.4677776665 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.0011
    TIGR03005  29 valiGpsGsGkstilrilmtletid 53 
                   al G  GsGkst++r++m  +t d
  MMETSP1061-20121228|21776_1 461 YALTGANGSGKSTLFRVIMGCDTND 485
                  5789***************987644 PP

  == domain 3    score: 20.1 bits;  conditional E-value: 7.4e-07
    TIGR03005 135 GladkadalpaqlsGGqkqrvaiaralalr...pkvllfdevtsaldpelveevlnvlrrlasetd 197
                   l d +d +   lsGGq+ +v + r + l    p++ll de+ + ldp+    v++ ++ +++   
  MMETSP1061-20121228|21776_1 631 ELVDVKDDWFNDLSGGQRSKVELVRKVFLMdecPHILLVDETMAPLDPRSKALVMSQIKSFCAGSV 696
                  67888999999**************987744559**********************9999998654 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.2   8.5e-06   0.00076     173     367 ..     278     481 ..     249     487 .. 0.62
   2 !   15.7   0.0   9.8e-06   0.00088     454     512 ..     642     702 ..     635     705 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.5e-06
    TIGR01842 173 teasikanklldsalrnaeviea..lgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikgeitaGmiiagsilv.graLa.PidqaievWkqfsaarkayk...rlkelleelpareea....lklPepegelevenvslvppeekk...ktlkgisfalkaGealaiiGpsgsGkssLarllvGv 367
                  +e++  ++k  +  l+n+e ++    g ++  ++rW +l+ k   + ++++ ++ + + +s + R+ + s+++      a+ + ++aG i+a+ i+v +ra+   +d ++   ++  + ++  +   +l+el +  ++++e+     +l + + + + e++++ +  +       +k  +++l+aG + a+ G+ gsGks+L r+++G 
  MMETSP1061-20121228|21776_1 278 QELNAVRSKVESYDLKNSELLHRsgSGAMEFTRQRWLELTVKVQMKMAVSTLTSRTKGFFSFIQRNFVFSVLVD----CALAQLMAAGKIVAADIFVfSRAIEdAVDMILMRSRSEAELARMMTqisNLRELSTVWKTAKERklfpCSLMSSRTNDSSEALVAFQNIAYSrgtASVKIDNLELSAG-IYALTGANGSGKSTLFRVIMGC 481
                  33444444445567889998875115678888999999988776666665555555555566666666665554....588999**********97647887525777777666644433333300144444444444444411123455555555556555554443333335566667888888.689*****************97 PP

  == domain 2    score: 15.7 bits;  conditional E-value: 9.8e-06
    TIGR01842 454 aLsgGqrqRiaLaRalygd...PklvvLDePnanLDeeGeqalakalkelkarkitvvvith 512
                   LsgGqr ++ L R ++ +   P+++++De  a LD +  + +++ +k+  a + +v+vi h
  MMETSP1061-20121228|21776_1 642 DLSGGQRSKVELVRKVFLMdecPHILLVDETMAPLDPRSKALVMSQIKSFCA-GSVVIVIYH 702
                  69**************964455****************99999999998865.666777766 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   8.3e-05    0.0074      10      55 ..     441     485 ..     434     491 .. 0.78
   2 !   17.7   0.0   5.4e-06   0.00048     129     195 ..     634     702 ..     620     710 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 8.3e-05
    TIGR02673  10 eyaagveaLkdvslkiekgeflfltGasGaGkttllklllgaekps 55 
                  +y++g++ +k  +l++++g ++ ltGa G+Gk+tl+++++g ++ +
  MMETSP1061-20121228|21776_1 441 AYSRGTASVKIDNLELSAG-IYALTGANGSGKSTLFRVIMGCDTND 485
                  5677777777777777766.678****************9988765 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 5.4e-06
    TIGR02673 129 dkakalpeelsgGeqqRvaiaRaiv...nkPelllaDePtGnlDdelserildllkelnkrGttvivath 195
                  d ++   + lsgG + +v + R +    + P++ll+De    lD++ ++ +++ +k++++ G  viv  h
  MMETSP1061-20121228|21776_1 634 DVKDDWFNDLSGGQRSKVELVRKVFlmdECPHILLVDETMAPLDPRSKALVMSQIKSFCA-GSVVIVIYH 702
                  555666789*************98644457**************************9986.666777666 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.8e-05    0.0025       9      49 ..     444     484 ..     437     510 .. 0.81
   2 !   16.0   0.0   1.3e-05    0.0012     130     178 ..     641     692 ..     622     703 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.8e-05
    TIGR02142   9 lgdfeLdvd.lelpgkgvtalFGrsGsGktslirliaGLtrp 49 
                   g+ ++++d lel++ g+ al G+ GsGk++l r+i G  + 
  MMETSP1061-20121228|21776_1 444 RGTASVKIDnLELSA-GIYALTGANGSGKSTLFRVIMGCDTN 484
                  577777775267777.*********************98665 PP

  == domain 2    score: 16.0 bits;  conditional E-value: 1.3e-05
    TIGR02142 130 gkLsGGekqRvaigRAlL...ssPeLLlmDePLaaLDekrkkeilPyLerls 178
                  ++LsGG + +v + R +      P++Ll+De +a LD ++k+ ++  +++  
  MMETSP1061-20121228|21776_1 641 NDLSGGQRSKVELVRKVFlmdECPHILLVDETMAPLDPRSKALVMSQIKSFC 692
                  79*************87523346******************99998777665 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0     8e-05    0.0071      29      54 ..     460     485 ..     437     493 .. 0.80
   2 !   17.3   0.0   5.2e-06   0.00046     126     193 ..     631     701 ..     616     708 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 8e-05
    TIGR03873  29 ltgllGPnGsGkstllrllaGllapd 54 
                  + +l G nGsGkstl+r++ G  + d
  MMETSP1061-20121228|21776_1 460 IYALTGANGSGKSTLFRVIMGCDTND 485
                  66899***************987665 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 5.2e-06
    TIGR03873 126 elssladrdlstlsGGerqrvhlara...laqePklllldePtnhldvsaqlellalvrelaaegvtvvva 193
                  el ++ d  ++ lsGG+r +v+l r    +   P++ll+de    ld +++  +++ +++ +a  v +v+ 
  MMETSP1061-20121228|21776_1 631 ELVDVKDDWFNDLSGGQRSKVELVRKvflMDECPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIY 701
                  566777778899*************73324567**************************997766665554 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0         7   6.2e+02     121     158 ..     192     234 ..     187     239 .. 0.74
   2 !    8.6   0.0    0.0023       0.2      32      58 ..     460     486 ..     434     490 .. 0.81
   3 !   20.6   0.0   5.3e-07   4.7e-05     123     180 ..     631     691 ..     623     704 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 7
    TIGR03265 121 lvglsgseekyPgqlsGGqqqrva.....LaralalsPglLLL 158
                  lv l + + k P+ +sG     v      + r l   P++LLL
  MMETSP1061-20121228|21776_1 192 LVALADHSAKAPADFSGYMDTIVTttyelFNRKLFSLPKVLLL 234
                  8999999999999999988887763333245777778888887 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.0023
    TIGR03265  32 lvclLGPsGCGkttLLriiaGLekqda 58 
                  + +l G  G Gk+tL+r+i G +++d+
  MMETSP1061-20121228|21776_1 460 IYALTGANGSGKSTLFRVIMGCDTNDR 486
                  56899*****************99875 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 5.3e-07
    TIGR03265 123 glsgseekyPgqlsGGqqqrvaLaralal...sPglLLLDePlsaLDakvrekLreelkkl 180
                  +l ++++ + + lsGGq+ +v L r + l    P++LL+De ++ LD + ++ + + +k++
  MMETSP1061-20121228|21776_1 631 ELVDVKDDWFNDLSGGQRSKVELVRKVFLmdeCPHILLVDETMAPLDPRSKALVMSQIKSF 691
                  5778899999***************86542228****************999888888865 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   0.0     0.012       1.1      14      39 ..     454     478 ..     442     484 .. 0.78
   2 !   22.3   0.0   1.7e-07   1.5e-05     113     179 ..     631     700 ..     618     708 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.012
    TIGR01188  14 lkveegevfglLGPnGAGKtttikmL 39 
                  l++++g +++l G nG GK+t+ +++
  MMETSP1061-20121228|21776_1 454 LELSAG-IYALTGANGSGKSTLFRVI 478
                  555444.9**************9986 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 1.7e-07
    TIGR01188 113 elkeaadkkvktysgGmrrrlelaasli...aqPevlfLDEPtiGLDprtrraiwdlieelkkegvtill 179
                  el++ +d   + +sgG+r ++el++ +    + P++l +DE    LDpr+++ + + i+++    v i++
  MMETSP1061-20121228|21776_1 631 ELVDVKDDWFNDLSGGQRSKVELVRKVFlmdECPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVI 700
                  7899999999*************9985422256**************************99876665554 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00026     0.023     333     384 ..     433     481 ..     344     488 .. 0.81
   2 !   17.5   0.0     3e-06   0.00027     471     529 ..     642     703 ..     635     704 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00026
    TIGR02868 333 ptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlallagl 384
                  + + ++++++s+ +a+  ++  +l+l++G   a++Ga G+GKstL  +++g 
  MMETSP1061-20121228|21776_1 433 ALVAFQNIAYSRGTASVKID--NLELSAGI-YALTGANGSGKSTLFRVIMGC 481
                  45566677766666655444..56667774.79****************995 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 3e-06
    TIGR02868 471 rlSGGerqRlalARa..Lladap.vllLDEPtehLDaeteeelledLlaaeegrtvvlvthr 529
                   lSGG+r ++ l R   L+ + p +ll+DE  + LD+  ++ +++++ +  +g +v+++ h 
  MMETSP1061-20121228|21776_1 642 DLSGGQRSKVELVRKvfLMDECPhILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIYHT 703
                  59************622555554499*********************************995 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   0.00015     0.013      13      40 ..     454     480 ..     442     486 .. 0.78
   2 !   14.9   0.0   3.4e-05     0.003     119     187 ..     634     705 ..     621     707 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00015
    TIGR01166  13 lavergevlallGanGaGkstlllhlnG 40 
                  l+++ g   al GanG+Gkstl++ + G
  MMETSP1061-20121228|21776_1 454 LELSAG-IYALTGANGSGKSTLFRVIMG 480
                  444444.579**************9988 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 3.4e-05
    TIGR01166 119 gleerpthllsgGekkrvaiagavalr...pdvllldePtagldpaGaeqlleilrklreeGktvvisthdv 187
                  ++++   + lsgG++ +v +   v l    p++ll+de  a ldp+ +  +++ ++ + +    +vi   dv
  MMETSP1061-20121228|21776_1 634 DVKDDWFNDLSGGQRSKVELVRKVFLMdecPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIYHTDV 705
                  556667789*********99888776435589**************************99888888877776 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0     0.015       1.3       1      23 [.     463     485 ..     463     489 .. 0.90
   2 !   21.2   0.0   3.2e-07   2.8e-05      90     148 ..     632     693 ..     615     708 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.015
    TIGR01187   1 lLGpsGsGkttlLrllaGleeld 23 
                  l G+ GsGk+tl+r++ G ++ d
  MMETSP1061-20121228|21776_1 463 LTGANGSGKSTLFRVIMGCDTND 485
                  569***************99876 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 3.2e-07
    TIGR01187  90 leefakrkpsqlsGGqrqrvalaravv...kkPkiLLlDeplsaLDkkLrdqmqlelkalqe 148
                  l ++ +   ++lsGGqr +v l r v    + P+iLL+De+++ LD + +  +   +k++  
  MMETSP1061-20121228|21776_1 632 LVDVKDDWFNDLSGGQRSKVELVRKVFlmdECPHILLVDETMAPLDPRSKALVMSQIKSFCA 693
                  45556677889*************98633357**************9999888888877655 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       5.1   4.5e+02      33     107 ..      86     157 ..      73     168 .. 0.70
   2 !    7.5   0.0    0.0055      0.49      11      47 ..     442     478 ..     435     487 .. 0.72
   3 !   19.4   0.0   1.3e-06   0.00011     130     201 ..     628     702 ..     605     710 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 5.1
    TIGR00972  33 iGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfpmsiydnvayglr 107
                  iG  G+ ks+       l+   e+++++ +++ + k   ++  ++ +++++   vfq+    p+  +  v y ++
  MMETSP1061-20121228|21776_1  86 IGSIGTTKSSPESEKASLQIEKEKTKCSNEIMCRTKTTSKQGKNERKMKRS--KVFQRTA-APFIFFTAVPYMVK 157
                  555566666665555666667788899999999999998888888888775..6899864.23344555555555 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0055
    TIGR00972  11 ygekealkdv.nleikknkvtaliGpsGcGkstllrsl 47 
                  y+  +a  ++ nle+ +  + al G  G+Gkstl+r +
  MMETSP1061-20121228|21776_1 442 YSRGTASVKIdNLEL-SAGIYALTGANGSGKSTLFRVI 478
                  555554444414444.45699**************987 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 1.3e-06
    TIGR00972 130 lwdevkdklkksalsLsGGqqqrlciaralave...PevlLlDePtsaLDpiatekieeliqeLkkkytivivth 201
                  +++e+ d  ++  + LsGGq+ ++ + r + +    P++lL+De  + LDp + + + + i++      ++++ h
  MMETSP1061-20121228|21776_1 628 IMEELVDVKDDWFNDLSGGQRSKVELVRKVFLMdecPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIYH 702
                  677888888888999*************9876434599*******************999999988776666665 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0065      0.58       3      47 ..     437     481 ..     435     489 .. 0.77
   2 !   19.7   0.0   1.2e-06   0.00011     124     182 ..     638     699 ..     625     711 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0065
    TIGR01277   3 lddviyeykhlplefd.lsveaGervailGesGaGkstllnliaGf 47 
                  ++++ y   +  ++ d l+++aG + a+ G  G+Gkstl+ +i G 
  MMETSP1061-20121228|21776_1 437 FQNIAYSRGTASVKIDnLELSAG-IYALTGANGSGKSTLFRVIMGC 481
                  56777777777777642566555.78*****************996 PP

  == domain 2    score: 19.7 bits;  conditional E-value: 1.2e-06
    TIGR01277 124 rlpeelsGGqrqrvalar.c.lvrekp.illldepfsaldpklreemlalvkkladekkltl 182
                     ++lsGGqr +v l r   l+ e p ill+de ++ ldp+ +  +++ +k  +    + +
  MMETSP1061-20121228|21776_1 638 DWFNDLSGGQRSKVELVRkVfLMDECPhILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIV 699
                  55689***********9943244555569999*************99999999998654444 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00042     0.037      32      61 ..     454     482 ..     438     488 .. 0.81
   2 ?    2.6   0.0      0.19        17     107     141 ..     551     586 ..     547     603 .. 0.83
   3 !   11.4   0.0    0.0004     0.036     142     198 ..     634     693 ..     622     705 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00042
    TIGR02769  32 lsleeGetvallGrsGaGkstlarlllGle 61 
                  l+l +G   al G  G+Gkstl r+++G +
  MMETSP1061-20121228|21776_1 454 LELSAGI-YALTGANGSGKSTLFRVIMGCD 482
                  4555554.69******************76 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.19
    TIGR02769 107 vreiig.ePlrhltsldeserkariaellelvelrs 141
                  +++i++  P ++lt+ d  +r++r+aell+ +e+++
  MMETSP1061-20121228|21776_1 551 IDWILQqSPTENLTEKDLEDRRRRVAELLHSLEFSQ 586
                  677875269*********************998764 PP

  == domain 3    score: 11.4 bits;  conditional E-value: 0.0004
    TIGR02769 142 evldklPrqlsGGqlqriniaralave...Pklivldeavsnldlvlqasilellkklkq 198
                  +v d   ++lsGGq  ++ + r + +    P+++++de+++ ld   +a +++++k + +
  MMETSP1061-20121228|21776_1 634 DVKDDWFNDLSGGQRSKVELVRKVFLMdecPHILLVDETMAPLDPRSKALVMSQIKSFCA 693
                  455556689*************987643459**********************9998755 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.36        32     124     162 ..     191     234 ..     179     245 .. 0.79
   2 !    8.2   0.0    0.0026      0.23      24      57 ..     449     481 ..     427     487 .. 0.76
   3 !   14.6   0.0   3.1e-05    0.0027     120     184 ..     629     691 ..     607     709 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.36
    TIGR03258 124 klvqlsdaaarlpaqlsGGqqqrva.....laralvvrpdvlll 162
                   lv l+d +a+ pa +sG +   v+     + r l   p+vlll
  MMETSP1061-20121228|21776_1 191 HLVALADHSAKAPADFSGYMDTIVTttyelFNRKLFSLPKVLLL 234
                  5899****************998872222235777777888887 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0026
    TIGR03258  24 lddlsleieaGellallGksGsGkttllravaGf 57 
                  ++   le+ aG + al G  GsGk+tl+r++ G 
  MMETSP1061-20121228|21776_1 449 VKIDNLELSAG-IYALTGANGSGKSTLFRVIMGC 481
                  33335666666.89*****************995 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 3.1e-05
    TIGR03258 120 adalklvqlsdaaarlpaqlsGGqqqrvalaralvvr...pdvllldeplsaldaqlrasvveelkal 184
                   +     +l d+   + + lsGGq+ +v l r + +    p++ll+de ++ ld + +a v++++k++
  MMETSP1061-20121228|21776_1 629 ME-----ELVDVKDDWFNDLSGGQRSKVELVRKVFLMdecPHILLVDETMAPLDPRSKALVMSQIKSF 691
                  44.....355667788899*************9987444599********************999975 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00054     0.048      21      55 ..     453     484 ..     434     489 .. 0.71
   2 !   14.0   0.0   7.6e-05    0.0068     133     196 ..     637     702 ..     621     708 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00054
    TIGR00960  21 nvtvkiekGelvflvGhsGaGkstllklilgiekp 55 
                  n  ++++ G +  l+G  G+Gkstl+++i+g ++ 
  MMETSP1061-20121228|21776_1 453 N--LELSAG-IYALTGANGSGKSTLFRVIMGCDTN 484
                  3..344455.34599***************98875 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 7.6e-05
    TIGR00960 133 kalPvqlsgGeqqrvaiaravv...nkPallladePtgnlddelsrdilelleevnraGttvlvath 196
                   +   +lsgG++ +v + r v    + P++ll de  + ld+     +++ ++++  aG  v+v  h
  MMETSP1061-20121228|21776_1 637 DDWFNDLSGGQRSKVELVRKVFlmdECPHILLVDETMAPLDPRSKALVMSQIKSFC-AGSVVIVIYH 702
                  556679*************98633357**************************996.6777777766 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   8.9e-06   0.00079      20      50 ..     453     482 ..     446     486 .. 0.85
   2 !    7.9   0.0    0.0045       0.4     145     202 ..     643     702 ..     628     707 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 8.9e-06
    TIGR01978  20 nlevkkGevhaimGpnGsGkstLskvlaghe 50 
                  nle+++G ++a+ G+nGsGkstL +v++g +
  MMETSP1061-20121228|21776_1 453 NLELSAG-IYALTGANGSGKSTLFRVIMGCD 482
                  5666666.89******************965 PP

  == domain 2    score: 7.9 bits;  conditional E-value: 0.0045
    TIGR01978 145 fsGGekkrneilqlalle...PklaiLDeiDsGlDvDalkivaegvnklreeekalliith 202
                   sGG + + e+++  +l    P++ ++De+ + lD  +  +v+++++++   +  +++i h
  MMETSP1061-20121228|21776_1 643 LSGGQRSKVELVRKVFLMdecPHILLVDETMAPLDPRSKALVMSQIKSFCAGS-VVIVIYH 702
                  7**********98777744569************************9997654.3445555 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0    0.0013      0.12      30      57 ..     458     485 ..     431     490 .. 0.75
   2 !   14.9   0.0   2.5e-05    0.0022     133     189 ..     640     699 ..     625     711 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.0013
    TIGR01288  30 gecfgllgpngagkstiarlvlglispd 57 
                     + l g ng+gkst+ r+++g  + d
  MMETSP1061-20121228|21776_1 458 AGIYALTGANGSGKSTLFRVIMGCDTND 485
                  34799******************87766 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 2.5e-05
    TIGR01288 133 vadlsggmkrrltlarali.nd..pqllildepttgldpharhliwerlrsllargktil 189
                    dlsgg + ++ l r +   d  p++l++de  + ldp ++ l+  +++s+ a    i+
  MMETSP1061-20121228|21776_1 640 FNDLSGGQRSKVELVRKVFlMDecPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIV 699
                  579********99987643222359**************************988655554 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.2   0.0     0.016       1.5      25      53 ..     453     480 ..     439     486 .. 0.80
   2 !   17.8   0.0   4.6e-06   0.00041     135     198 ..     636     700 ..     560     707 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.016
    TIGR02982  25 nleiepgeiviltGpsGsGkttlltligg 53 
                  nle+++g i  ltG+ GsGk tl+ +i g
  MMETSP1061-20121228|21776_1 453 NLELSAG-IYALTGANGSGKSTLFRVIMG 480
                  5666555.7889***********998865 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 4.6e-06
    TIGR02982 135 ldykpedlsgGqkqrvaiaralv...arPklvladePtaaldkksgrevvellqklareqgttillv 198
                   d   +dlsgGq+ +v + r +    + P+++l de  a ld +s   v++ ++      g+ ++++
  MMETSP1061-20121228|21776_1 636 KDDWFNDLSGGQRSKVELVRKVFlmdECPHILLVDETMAPLDPRSKALVMSQIKSFCA--GSVVIVI 700
                  4455689*************85422357*****************9999888877653..4444444 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.6   0.0    0.0067       0.6       8      29 ..     460     481 ..     454     489 .. 0.85
   2 !   16.3   0.0   1.4e-05    0.0013     103     169 ..     632     701 ..     621     709 .. 0.79

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0067
    TIGR03771   8 llgllGpnGaGkttllrailgl 29 
                  + +l G nG+Gk+tl+r i+g 
  MMETSP1061-20121228|21776_1 460 IYALTGANGSGKSTLFRVIMGC 481
                  5689***************985 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 1.4e-05
    TIGR03771 103 lteladrpvGelsGGqrqrvlvaralavk...pslllldepftGldlpsqellvelfeelagegtailmt 169
                  l +++d    +lsGGqr +v + r + +    p++ll+de ++ ld  s+ l++  ++++++    i++ 
  MMETSP1061-20121228|21776_1 632 LVDVKDDWFNDLSGGQRSKVELVRKVFLMdecPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIY 701
                  56677778899*********888875442234**************999999999999888766666654 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0    0.0099      0.88     335     387 ..     432     479 ..     214     481 .. 0.78
   2 !   16.8   0.0   5.1e-06   0.00045     476     533 ..     642     702 ..     621     706 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.0099
    TIGR02204 335 rgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelll 387
                  ++ ++f+++  ay   +    +d+l+l+  +G   al G  G+Gkstl+++++
  MMETSP1061-20121228|21776_1 432 EALVAFQNI--AYSRGTASVKIDNLELS--AG-IYALTGANGSGKSTLFRVIM 479
                  444556655..45566666677766665..45.67**************9875 PP

  == domain 2    score: 16.8 bits;  conditional E-value: 5.1e-06
    TIGR02204 476 tLsGGqkqriaiarai.lkd.ap.iLLLdeatsaLdaeseqlvqqaleelmkgrttlviah 533
                   LsGGq+ ++ + r + l d  p iLL+de  + Ld +s  lv   +++  +g   +vi h
  MMETSP1061-20121228|21776_1 642 DLSGGQRSKVELVRKVfLMDeCPhILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIYH 702
                  69**********9975344424449**********************************99 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0    0.0017      0.15      28      55 ..     453     479 ..     438     486 .. 0.81
   2 !   13.5   0.0   8.6e-05    0.0077     150     211 ..     643     706 ..     627     711 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0017
    TIGR02324  28 sleveaGelvalsGksGaGkstllksly 55 
                  +le++aG + al+G+ G+Gkstl++++ 
  MMETSP1061-20121228|21776_1 453 NLELSAG-IYALTGANGSGKSTLFRVIM 479
                  4566666.679**************997 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 8.6e-05
    TIGR02324 150 fsGGekqRvniara..liadrP.iLLLdePtasLdaanrkvvvelikeakargaaligifhdeev 211
                   sGG + +v + r   l+ + P iLL+de  a Ld   ++ v+  ik+   +g  +i i+h +  
  MMETSP1061-20121228|21776_1 643 LSGGQRSKVELVRKvfLMDECPhILLVDETMAPLDPRSKALVMSQIKSFC-AGSVVIVIYHTDVG 706
                  79*********99732456678567789999************9999876.5788899***8765 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0     0.002      0.18      29      51 ..     459     481 ..     435     489 .. 0.78
   2 !   12.9   0.0   0.00016     0.014     132     200 ..     631     702 ..     607     706 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.002
    TIGR03411  29 elrviiGpnGaGkttllDvitGk 51 
                   + ++ G+nG+Gk+tl+ vi+G 
  MMETSP1061-20121228|21776_1 459 GIYALTGANGSGKSTLFRVIMGC 481
                  367899**************995 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 0.00016
    TIGR03411 132 gLeekadkkaglLshGqkqwLeig...mllvqepkllllDePvaGmtdeetektaellkelakersvvvveh 200
                  +L + +d   + Ls Gq+  +e+    +l+ + p++ll+De +a +  + ++ + + +k+     +v+v+ h
  MMETSP1061-20121228|21776_1 631 ELVDVKDDWFNDLSGGQRSKVELVrkvFLMDECPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIYH 702
                  466777788889*******999853324555669************************************99 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0         4   3.6e+02     127     163 ..     192     233 ..     179     240 .. 0.80
   2 ?    5.1   0.0     0.024       2.1      30      51 ..     458     478 ..     439     488 .. 0.81
   3 !   15.4   0.0   1.7e-05    0.0015     130     185 ..     632     690 ..     621     706 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 4
    TIGR02314 127 lvglsdkkdsypsnlsggqkqrva.....iaralasepkvll 163
                  lv l+d+    p+++sg     v+       r l s pkvll
  MMETSP1061-20121228|21776_1 192 LVALADHSAKAPADFSGYMDTIVTttyelFNRKLFSLPKVLL 233
                  899999999999999999988887222224688999999998 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.024
    TIGR02314  30 kgqifgvigasgagkstlircv 51 
                  +  i+ + ga g+gkstl r +
  MMETSP1061-20121228|21776_1 458 A-GIYALTGANGSGKSTLFRVI 478
                  3.499**************986 PP

  == domain 3    score: 15.4 bits;  conditional E-value: 1.7e-05
    TIGR02314 130 lsdkkdsypsnlsggqkqrvaiara...lasepkvllcdeatsaldpattqsilellke 185
                  l d kd +  +lsggq+ +v + r    +   p++ll de+ + ldp +   ++  +k 
  MMETSP1061-20121228|21776_1 632 LVDVKDDWFNDLSGGQRSKVELVRKvflMDECPHILLVDETMAPLDPRSKALVMSQIKS 690
                  7799999***************99733134569**************998888777775 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   0.1     0.033         3       7      39 ..     447     478 ..     443     481 .. 0.83
   2 !   16.5   0.0   8.6e-06   0.00077     120     165 ..     633     681 ..     623     703 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.033
    TIGR01186   7 lgvndvdleieeGeiiviiGlsGsGkstlvrll 39 
                   +v+  +le+  G i+ + G  GsGkstl r++
  MMETSP1061-20121228|21776_1 447 ASVKIDNLELSAG-IYALTGANGSGKSTLFRVI 478
                  5677778888877.899*************987 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 8.6e-06
    TIGR01186 120 eeyedryPdelsGGmqqrvGlara...laaePdlllmdeafsaldPlir 165
                   + +d + ++lsGG++ +v l+r    +   P +ll+de+++ ldP  +
  MMETSP1061-20121228|21776_1 633 VDVKDDWFNDLSGGQRSKVELVRKvflMDECPHILLVDETMAPLDPRSK 681
                  566788999**************7331234599*************765 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0    0.0016      0.15      44      74 ..     453     482 ..     438     488 .. 0.77
   2 !   10.8   0.0   0.00042     0.038     154     198 ..     632     679 ..     626     690 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0016
    TIGR03415  44 sldveeGeilvlmGlsGsGkssllravngln 74 
                  +l+++ G i  l G  GsGks+l+r + g +
  MMETSP1061-20121228|21776_1 453 NLELSAG-IYALTGANGSGKSTLFRVIMGCD 482
                  4555554.899***************98876 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00042
    TIGR03415 154 laeWadkkvgelsGGmqqrvGlar.afatea..dillmdePfsaldPl 198
                  l + +d   ++lsGG + +v l r  f ++    ill+de ++ ldP 
  MMETSP1061-20121228|21776_1 632 LVDVKDDWFNDLSGGQRSKVELVRkVFLMDEcpHILLVDETMAPLDPR 679
                  6667788899************994577874337*************5 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00021     0.019      24      50 ..     456     482 ..     435     488 .. 0.73
   2 !    7.6   0.0    0.0057      0.51     124     165 ..     635     679 ..     615     705 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00021
    TIGR03410  24 ekgevvavlGrngvGkttllkalvgll 50 
                   +  + a+ G ng Gk+tl++ ++g  
  MMETSP1061-20121228|21776_1 456 LSAGIYALTGANGSGKSTLFRVIMGCD 482
                  3456899*****************975 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0057
    TIGR03410 124 mlkRrgGdLsGGqqqqlaiaRaLvte...PklllLDePteGiqPs 165
                  +++    dLsGGq+ ++ + R +      P++ll+De +  + P 
  MMETSP1061-20121228|21776_1 635 VKDDWFNDLSGGQRSKVELVRKVFLMdecPHILLVDETMAPLDPR 679
                  55555679***********9975432135********98888776 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.8   0.0      0.01      0.92     302     333 ..     453     481 ..     435     486 .. 0.77
   2 !   13.8   0.0   3.9e-05    0.0035     167     215 ..     641     692 ..     627     706 .. 0.82

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.01
    TIGR03269 302 nvslevkekeifGlvGtsGaGkttlskilaGv 333
                  n++l    + i+ l G  G+Gk+tl ++++G 
  MMETSP1061-20121228|21776_1 453 NLEL---SAGIYALTGANGSGKSTLFRVIMGC 481
                  3333...36799*****************995 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 3.9e-05
    TIGR03269 167 rdlsGGekqrvvlarqla...keplllladeptGtldpktaklvhealkeav 215
                   dlsGG++ +v l+r++      p +ll de    ldp++  lv + +k   
  MMETSP1061-20121228|21776_1 641 NDLSGGQRSKVELVRKVFlmdECPHILLVDETMAPLDPRSKALVMSQIKSFC 692
                  59*************964222569*******************999988755 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   0.00095     0.085      29      57 ..     457     484 ..     438     517 .. 0.81
   2 !    9.4   0.0    0.0017      0.15     140     190 ..     641     691 ..     625     708 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00095
    TIGR02211  29 ekgelvaivGssGsGkstllhllggldkp 57 
                  + + + a++G+ GsGkstl+ ++ g d+ 
  MMETSP1061-20121228|21776_1 457 S-AGIYALTGANGSGKSTLFRVIMGCDTN 484
                  3.457899***************999875 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0017
    TIGR02211 140 selsGGerqrvaiaralv...nkPklvladePtgnldkktakkifelllelnke 190
                   +lsGG+r +v + r +    + P+++l de  + ld ++   +++ ++     
  MMETSP1061-20121228|21776_1 641 NDLSGGQRSKVELVRKVFlmdECPHILLVDETMAPLDPRSKALVMSQIKS---F 691
                  68***********9985422356**************9998877655544...3 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0085      0.76      54      78 ..     461     485 ..     455     497 .. 0.84
   2 !   12.2   0.0   0.00012     0.011     165     224 ..     641     702 ..     630     704 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0085
    TIGR00955  54 lAvlGsSGaGKtTLlnalafrsekg 78 
                   A+ G+ G+GK+TL+ +++  ++++
  MMETSP1061-20121228|21776_1 461 YALTGANGSGKSTLFRVIMGCDTND 485
                  6999*************99877765 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 0.00012
    TIGR00955 165 kglSgGerkRlalasell...tdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiH 224
                    lSgG+r ++ l   +    ++P++L++DE  + LD  s a v++ +k+++  g++vi+  H
  MMETSP1061-20121228|21776_1 641 NDLSGGQRSKVELVRKVFlmdECPHILLVDETMAPLDPRSKALVMSQIKSFCA-GSVVIVIYH 702
                  569*********99987645568*****************************7.666777666 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0     3e-05    0.0027      26      49 ..     458     481 ..     439     487 .. 0.82
   2 ?    3.8   0.0     0.093       8.3     141     179 ..     662     700 ..     628     705 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3e-05
    TIGR03740  26 nsvygllGpnGaGkstllklltGl 49 
                    +y+l G nG+Gkstl++++ G 
  MMETSP1061-20121228|21776_1 458 AGIYALTGANGSGKSTLFRVIMGC 481
                  569******************996 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.093
    TIGR03740 141 nkPkllildePtnGldPlGiqelreliksfpekGitvil 179
                  + P++l++de +  ldP     +   iksf    + +++
  MMETSP1061-20121228|21776_1 662 ECPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVI 700
                  359***************999999999999987666655 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.0     0.087       7.7      83     138 ..     173     234 ..     146     238 .. 0.74
   2 ?    4.3   0.0     0.063       5.6       6      36 ..     454     483 ..     449     489 .. 0.80
   3 !    8.7   0.0    0.0028      0.25     104     169 ..     632     700 ..     618     707 .. 0.80

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.087
    TIGR01184  83 lrdlskser.reiveehielvglreaadkrpeqlsggmkqrvaia.....ralsirpkllll 138
                  + d++++ r  ++ +++ +lv+l + + k p+++sg m   v+ +     r l   pk+lll
  MMETSP1061-20121228|21776_1 173 RDDIHRAVRlYDLFDHDNHLVALADHSAKAPADFSGYMDTIVTTTyelfnRKLFSLPKVLLL 234
                  5555555442467889999********************99986512222556666888876 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.063
    TIGR01184   6 leikkgefislighsgcgkstllnliaglek 36 
                  le++ g   +l g  g gkstl+ +i g + 
  MMETSP1061-20121228|21776_1 454 LELSAGI-YALTGANGSGKSTLFRVIMGCDT 483
                  5555554.4799**************99875 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.0028
    TIGR01184 104 lreaadkrpeqlsggmkqrvaiaralsi...rpklllldepfgaldaltreelqekllkiveearvtvl 169
                  l + +d   ++lsgg + +v + r + +    p++ll+de +  ld  ++  +  ++   +  + v v+
  MMETSP1061-20121228|21776_1 632 LVDVKDDWFNDLSGGQRSKVELVRKVFLmdeCPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVI 700
                  5667788899**************865422279*************99999988888888876665555 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.0   0.00072     0.065      21      49 ..     453     480 ..     435     485 .. 0.81
   2 ?    4.2   0.0     0.029       2.6     402     459 ..     641     701 ..     621     707 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00072
    TIGR02633  21 dlklraGeivslcGenGaGkstlmkvlsg 49 
                  +l+l aG i +l G nG+Gkstl++v+ g
  MMETSP1061-20121228|21776_1 453 NLELSAG-IYALTGANGSGKSTLFRVIMG 480
                  3666776.899***************987 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.029
    TIGR02633 402 arlsGGnqqkavlak.lllln..prvlildeptrGvdvGakyeiyklinqlaqeGvaiivv 459
                    lsGG++ k  l + ++l++  p++l++de    +d  +k+ +   i+ +++  v i++ 
  MMETSP1061-20121228|21776_1 641 NDLSGGQRSKVELVRkVFLMDecPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIY 701
                  579******997765155554569********************99999999988887765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   0.0     0.055       4.9      30      50 ..     460     480 ..     441     486 .. 0.84
   2 ?    5.2   0.0      0.03       2.6     131     189 ..     640     701 ..     625     709 .. 0.81

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.055
    TIGR03522  30 ivGflGPnGaGkstlmkiltg 50 
                  i  + G nG+Gkstl +++ g
  MMETSP1061-20121228|21776_1 460 IYALTGANGSGKSTLFRVIMG 480
                  67788************9976 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.03
    TIGR03522 131 igalskGyrqrvGlakal.lhd..PkvlildePttGldPnqlveirevikeiakdktvilst 189
                   ++ls G r +v l + + l d  P++l++de  + ldP     +   ik+ +    vi+  
  MMETSP1061-20121228|21776_1 640 FNDLSGGQRSKVELVRKVfLMDecPHILLVDETMAPLDPRSKALVMSQIKSFCAGSVVIVIY 701
                  6899**********98752444469**************99888888899888777776654 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.3       6.9   6.1e+02      34      77 ..      97     140 ..      71     150 .. 0.52
   2 ?   -4.1   0.0         9     8e+02     384     406 ..     267     289 ..     263     312 .. 0.72
   3 ?    8.3   0.0    0.0017      0.15     473     500 ..     453     479 ..     386     482 .. 0.76
   4 ?    2.3   0.0      0.11       9.5     573     599 ..     630     658 ..     557     679 .. 0.72

  Alignments for each domain:
  == domain 1    score: -3.7 bits;  conditional E-value: 6.9
    TIGR00954  34 ekkkkravdaredesskeelkkesknselekkkkkalvdkeflg 77 
                  e +k  +++ +e+ +  +e    +k +++++k++++++ ++ ++
  MMETSP1061-20121228|21776_1  97 ESEKASLQIEKEKTKCSNEIMCRTKTTSKQGKNERKMKRSKVFQ 140
                  23333333333334444444445554445555555555555554 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 9
    TIGR00954 384 lgRlveakrditrLaGytaRvde 406
                   +R+ e+ +di++L+ ++++v+ 
  MMETSP1061-20121228|21776_1 267 TNRVEELEKDIQELNAVRSKVES 289
                  56788888888888888888764 PP

  == domain 3    score: 8.3 bits;  conditional E-value: 0.0017
    TIGR00954 473 sfevksGnhlLiiGPnGcGKsslfRilg 500
                  ++e+  G   L +G nG GKs lfR++ 
  MMETSP1061-20121228|21776_1 453 NLELSAGIYAL-TGANGSGKSTLFRVIM 479
                  45666777665.8*************96 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.11
    TIGR00954 573 g..wdavqdWkdvLsgGekqRiamARlfy 599
                      d+  dW + LsgG++ ++ + R  +
  MMETSP1061-20121228|21776_1 630 EelVDVKDDWFNDLSGGQRSKVELVRKVF 658
                  255677789***************99655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        63  (0.0153584); expected 4.1 (0.001)
Passed Fwd filter:                        46  (0.011214); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              46  [number of targets reported over threshold]
# CPU time: 0.68u 0.15s 00:00:00.83 Elapsed: 00:00:00.46
# Mc/sec: 2131.91
//
Query:       MMETSP1061-20121228|21785_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1297.89
//
Query:       MMETSP1061-20121228|21782_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 2126.91
//
Query:       MMETSP1061-20121228|21798_1  [L=973]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (973 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:00.36
# Mc/sec: 3567.37
//
Query:       MMETSP1061-20121228|21805_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2095.33
//
Query:       MMETSP1061-20121228|21820_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|21828_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-23   81.8   2.4    2.3e-23   80.7   0.7    2.2  2  TIGR00550 nadA: quinolinate synthetase complex, A subunit


Domain annotation for each model (and alignments):
>> TIGR00550  nadA: quinolinate synthetase complex, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.7   0.7   5.7e-27   2.3e-23       6     252 ..     140     479 ..     136     496 .. 0.71
   2 ?   -4.1   0.0      0.37   1.5e+03     260     278 ..     542     558 ..     538     567 .. 0.60

  Alignments for each domain:
  == domain 1    score: 80.7 bits;  conditional E-value: 5.7e-27
    TIGR00550   6 lkekikklkkelnavilaHyYqkdeiqelAdetG.............DsLelakvaektdad....livfcGvhFmaEtak.iLnpekkvllPd.....leaeCsladmldvee.....vkklkelypdelv...vvYvnttAevkAka.....divvtssnAvkvvesldkd..kkkilfaPDknLgr.....yvleqtlkdiilid...........................ekGaCivHekFktedleelkeky...PdaeilvHPEcekevve......laD..aigstsqlleavek..........sdae.......kliigtevglvnrlekesedk 252
                  ++e++k+ + ++++ i+aHyY + e+q + + +              DsL++  +a    +d     +v  Gv+Fm+E+++ iLn +    +P      ++ +Csla+++++e+       + k++  + +v   v+Y+nt+ e+kA +      i++tssn v+ + ++ ++  + +++++PD  +g+     +   +  ++   ++                            +G+C+vH++F  +   +++ ky   Pd  i +H E + e+ e      l D   +gst  +l+++++          +  +       ++i+gte g+v+ + +++++ 
  MMETSP1061-20121228|21828_1 140 MVETLKEGLLKTDMGIVAHYYMDVELQGILQSLRnshpqlkhrigiaDSLKMGDQAVDMCRDhgvtSVVCLGVDFMSESVQaILNKNGFGDVPVyrattKHIGCSLAESAETEQyrawlQTESKKALDEGCVplhVIYINTSLETKAVSssivpTITCTSSNVVQTMLQAASEipNLRVMYGPDTYMGQnlarlF---EVIEESEDWTderikselhpahsnatlkalkenlvvfPQGNCVVHHMFGNQVTDTVRAKYenePDTYITAHLEVPGEMFEigmrksLNDegVVGSTADILNFISRkvkdaaksatA--DdakdrklRFILGTEAGMVTSIVEKVQEI 479
                  777777777788999***********9888777667778888888********999876544222167788********974788875444443111125568***********6665422333444444444469************9999999*******9987766665534679******88887542231...333333333356778889******************99**********988888777776666***********9998652222223452359*******9875411111111111..02222333689999999999988887765 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 0.37
    TIGR00550 260 alCeslamkritLekllea 278
                  a+C+   mk++++++l++ 
  MMETSP1061-20121228|21828_1 542 ATCPF--MKMNDVDALQDI 558
                  56776..666666655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.27
# Mc/sec: 3079.75
//
Query:       MMETSP1061-20121228|21851_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-39  133.3   0.1    3.3e-38  129.5   0.1    2.0  1  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.5   0.1   8.1e-42   3.3e-38       3     302 ..       6     369 ..       5     372 .. 0.79

  Alignments for each domain:
  == domain 1    score: 129.5 bits;  conditional E-value: 8.1e-42
    TIGR00569   3 nssqkrsWtftsedqlsekRvdane.............................kfreeeeeee.kvleakaitLtveEElelvkyYekklldlasalkptlPk.....evvgtAilyFkRFyLnnsvmeydPkiivltcvFlAcKveefnvsieqFvk..nlketrekaleevLeyEllliqsLkfsLlvhnPyrPleGFllDiktvlpkleneevlrkiad...................kflnevlltDvvllytPsqiaLaailseasrlvl..........klesrltealsvkenreelpqlidivrelkklkkkee..eerseevaklk...kkleeCksalenlssvkerkrkayeddtlisk 302
                  +ssq + W f+  ++l+  R   n+                             k   +ee+e     e ++ +L++eEE  lv +Y+ kl  l   +   lP+     ++ +tA +  +RFyL nsvm +dPk i++ ++FlA+Kve+    +    +  nl ++   al e+L  El+l+  ++f+Ll ++Py+ +     D++t l k e+ + l k  d                   + +n+v+ +D+ llytP qi Laa++ ++++                sr  ea  ++   ++++ l +i ++l++lk+ ++   ++s++ ++lk   kkl++C+    + + +k+++++a e+++  sk
  MMETSP1061-20121228|21851_1   6 DSSQLKAWLFS-PEDLELCRQRGNRlarkhlfsksseesnsppvecfardisklKTAFSEEDEGpTHTEDSKEFLNPEEENLLVSFYASKLPSLIGPMA-QLPRlrresKIPATAATLLRRFYLSNSVMIHDPKTIMVSAAFLASKVEDAMTDVRYLEEgtNLMNS-PVALSEILPAELKLLSGVNFELLCFHPYKAVLAITEDLRTYL-KSEKGKSLVKFLDgterpiigqdlkpmhddaqSIVNDVVVSDIPLLYTPGQIGLAALIVANEKQKGkndipqidllGYLSRRFEATDIP---RMTTLLHEIGTKLQELKEGRHgcGNYSIDMQQLKgihKKLKKCRAWGVKEKKKKKKRKNASEEEGADSK 369
                  79*********.888999999999999*********************99996644444433331456677889********************99888.788644444799**************************************9998876542266655.7899**********************************9998.44444444444444555666666777777788999************************999987768888775554557777777777...55566666666666666544311567777776543339*******999999777777777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 2056.83
//
Query:       MMETSP1061-20121228|21860_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1686.53
//
Query:       MMETSP1061-20121228|21896_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1314.61
//
Query:       MMETSP1061-20121228|21897_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.40
# Mc/sec: 1732.36
//
Query:       MMETSP1061-20121228|21934_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-55  186.3   6.3    2.1e-55  185.5   4.4    1.4  1  TIGR00291 RNA_SBDS: rRNA metabolism protein, SBDS family


Domain annotation for each model (and alignments):
>> TIGR00291  RNA_SBDS: rRNA metabolism protein, SBDS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5   4.4   5.2e-59   2.1e-55       2     225 ..      14     237 ..      13     245 .. 0.91

  Alignments for each domain:
  == domain 1    score: 185.5 bits;  conditional E-value: 5.2e-59
    TIGR00291   2 vsLeeaviaRlkkagerFevlvdpdlaadlregkevdldevLaieevFrdaskGekaseeelrkiFgttdvkevakkillkGeiqltakqRremlekkrkeiitiisrktinPqtkkphPPkriekaleelkvsidifksveeqvkeivkalkkilPikfekmkvavkipperageaiealsklgavtreewqedgswivvveipsglerdlmtlldkvtkgnv 225
                  v+L++++++R++k+g+rFe++++ +++ d+r+g e+dl evL+ e+vF ++skGe a+  +++k+Fgt+d +e+ k il kG++q+++k+R + lek   +i + is+++++P t++p+  ++i +a++e+ vsi + k+ + q  + vk+l+k++Pi+++km++ + ++ e + e    l k   +     +   s   +++++++l+r l +  +k++++ +
  MMETSP1061-20121228|21934_1  14 VQLTNVAVVRMNKGGKRFEIACYRNKVVDYRQGLEKDLSEVLQTERVFANVSKGEFAKAKDMQKVFGTKDEDEILKLILSKGQLQVSDKERTQQLEKTSAQIAEWISKNCVQPATDRPYTISQIRHAMKEANVSIHPTKPLKRQYLDSVKLLQKVIPIQRAKMELLLIVAHEDKDETETILEKNNVSISRLDETSPSVKYTLLVDPSLYRILSDATQKMSGARI 237
                  89*******************************************************************************************************************************************************************99999888877666665544333333455566778889999999999999999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       329  (0.0802048); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1497.03
//
Query:       MMETSP1061-20121228|21943_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1331.89
//
Query:       MMETSP1061-20121228|21950_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 951.71
//
Query:       MMETSP1061-20121228|21956_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 540.73
//
Query:       MMETSP1061-20121228|21954_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1817.39
//
Query:       MMETSP1061-20121228|21960_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1546.91
//
Query:       MMETSP1061-20121228|21970_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0098   11.8   0.0      0.014   11.3   0.0    1.1  1  TIGR02786 addB_alphas: double-strand break repair protein AddB


Domain annotation for each model (and alignments):
>> TIGR02786  addB_alphas: double-strand break repair protein AddB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   3.3e-06     0.014     252     313 ..     234     302 ..     232     309 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.3e-06
    TIGR02786 252 lDldldeeawqalgeaeeek......psvesHPQyglkkLLerlgvsrkeveeld.ekdrekekRealv 313
                  lD  ++e  w +l++ ++++      +   s  Qy++k L+++++v+ ++v++++  + ++ ++R++l+
  MMETSP1061-20121228|21970_1 234 LDSLVEEMRWTELKNFRDQSrdyslgHFDVSISQYRMKSLMKKIQVTIHDVADFSsMTTASDRNRRLLI 302
                  68888999******9888877556554445558**********************55556667777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.47
# Mc/sec: 996.94
//
Query:       MMETSP1061-20121228|21977_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 1435.38
//
Query:       MMETSP1061-20121228|21992_1  [L=934]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0068   12.0  38.3      0.009   11.6  12.1    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.013   10.9  38.3     0.0025   13.4  14.8    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6  12.1   4.4e-06     0.009     314     480 ..     278     450 ..     238     456 .. 0.57
   2 !   10.7  14.3   8.2e-06     0.017     699     894 ..     397     580 ..     373     591 .. 0.35

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 4.4e-06
    TIGR02168 314 lekeleeleeqleeleskkeeleeelaeleeeleel....keelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaele..qleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalq 480
                  l ++ e++++++e+le++k el+ ++a le+++ +     +++  sl +++e+a+a l+e+ +++ +l++++e++ +ev  l+++++++++  + +       +++++ + l  ++ +++++l e++++l++ +ee++  + ++ +le+el++++ +l+ le++++e++ +++
  MMETSP1061-20121228|21992_1 278 LASQMERMKQRVEQLEKEKMELSMSKAPLEARFRQKedlwQKDRSSLMDQIETAKASLREADEKYCDLKAQYETATEEVIHLRHEVRKASSSTRIAAGGSGsvAAASNSNSLWGRQLQNDRDLAEVKEKLRAAEEEISGIRLAKVSLEKELHATRIELRCLERNYDELKVEYD 450
                  44555566666666666666666665555555544433346666677777777777777777777777777777777777777776666555444333322003333333344444444455555555555555555555555555555555555555555555555544444 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 8.2e-06
    TIGR02168 699 ekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealael 894
                  ++ l+e++++l+++eee++ +r ++ +le++l++++ el+ le++  +l+ +++++ ++ +e +e + +le   ee  +++++ ++  ++l+a+ +++ +++k+ +e++          k+e+++++ +l+ +++++++++  ++ ++ + e + +    l+a+iee +++++ele el + ++ ++++++a++el
  MMETSP1061-20121228|21992_1 397 DRDLAEVKEKLRAAEEEISGIRLAKVSLEKELHATRIELRCLERNYDELKVEYDDIAAHTSENNEAEIKLEVLTEEHIATTAALNAVYADLDATKARADASMKEKEESH----------KKEIEQLQFDLSVIKTRASKVQVDVDAANLSVEGEDDA--VLRARIEERDRRIAELEIELLKGEQLRREMHNAIQEL 580
                  3344555555555555555555555555555555555555555544444444444333333322222222222222222222222222222222222222222222222..........22222222222222222222222222222222221111..1223333333333333333333333333333333332 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4  14.8   1.2e-06    0.0025     328     507 ..     278     463 ..     265     474 .. 0.82
   2 ?    7.7  15.3   6.4e-05      0.13     700     882 ..     395     581 ..     383     589 .. 0.46

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-06
    TIGR02169 328 aeaeidklkeeieelereieeekkereklkeelkelke....eleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeela.elka..elerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseees 507
                  + ++++++k+++e+le+e  e  + ++ l+++++++++     ++ l+ ++e  +++ +e+ e+  +lk + e ++ee   l+ e ++    + r+ + ++  + a  + +++  ++ + + +l e++e++++ae++++ ++  + ++ekel +++ el+ le++  el+ e++ + a+ +  +e++
  MMETSP1061-20121228|21992_1 278 LASQMERMKQRVEQLEKEKMELSMSKAPLEARFRQKEDlwqkDRSSLMDQIETAKASLREADEKYCDLKAQYETATEEVIHLRHEVRKA-SSSTRIAAGGSgSVAAasNSNSLWGRQLQNDRDLAEVKEKLRAAEEEISGIRLAKVSLEKELHATRIELRCLERNYDELKVEYDDIAAHTSENNEAE 463
                  568999***************************9997622215667788889999999999999999*************999766666.55555554444133330044567788999999999***************************************************99987666655 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 6.4e-05
    TIGR02169 700 riekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleee...leekkeelkeleaeieeleeklaklkealedleaelseekiee...ieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLe 882
                  + ++ l e+++kl++ae++i+ i+     le+e ++++ +l  le++ +el+ e   ++++ +e +e e ++e l+e+  +  +al++++a+l+  k +    ++e+ e+ ++e+++++  l+ i  + +k +++ + ++ +++   e+ + l ++++e+ ++i+el+++l + e+  +e+++a++eL+
  MMETSP1061-20121228|21992_1 395 QNDRDLAEVKEKLRAAEEEISGIRLAKVSLEKELHATRIELRCLERNYDELKVEyddIAAHTSENNEAEIKLEVLTEEHIATTAALNAVYADLDATKARAdasMKEKEESHKKEIEQLQFDLSVIKTRASKVQVDVDAANLSVEG--EDDAVLRARIEERDRRIAELEIELLKGEQLRREMHNAIQELR 581
                  4455555555555555555555555555555555555555555555555555431114444455555555555555555555555555555555554443111222222233333333333344444444444333333333333..233344555555555555555555555555555555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.54u 0.14s 00:00:00.68 Elapsed: 00:00:00.73
# Mc/sec: 1688.74
//
Query:       MMETSP1061-20121228|22007_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.39
# Mc/sec: 1749.70
//
Query:       MMETSP1061-20121228|22014_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-15   53.5   0.1    1.6e-13   47.8   0.0    2.2  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.3e-11   41.0   0.3    7.9e-10   35.9   0.1    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.3e-08   30.9   0.4    0.00086   14.9   0.0    3.0  3  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    4.5e-07   26.3   0.0    0.00032   16.9   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    4.3e-05   19.8   0.0     0.0001   18.6   0.0    1.6  2  TIGR00580 mfd: transcription-repair coupling factor
    8.2e-05   19.3   0.0    0.00093   15.8   0.0    2.1  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
      0.001   15.5   1.7     0.0054   13.2   0.0    2.4  3  TIGR00595 priA: primosomal protein N'


Domain annotation for each model (and alignments):
>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.0     0.008       4.7      29      49 ..     133     153 ..     126     161 .. 0.86
   2 !   47.8   0.0   2.7e-16   1.6e-13     228     318 ..     418     508 ..     380     515 .. 0.88

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.008
    TIGR01389  29 rdvlavlPtGGGkslCYqvPa 49 
                   +++a+  tG Gk l Y +P 
  MMETSP1061-20121228|22014_1 133 LNLMAIATTGSGKTLSYSIPM 153
                  5799****************5 PP

  == domain 2    score: 47.8 bits;  conditional E-value: 2.7e-16
    TIGR01389 228 iiYassRkkveelaeaLeskgiealaYhaGlskkvRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRD 318
                  ii+    k  + ++  L++++i+ +a h+ +++k+R+ +++ F   +  +++at     Gi   +v ++i +d P++le+y    GRaGR 
  MMETSP1061-20121228|22014_1 418 IIFFGRIKTLQYVHGLLQKDKIQGIALHSQMNQKKRESQLNLFRSGKCPILLATDVAARGIHIKNVEYIINYDFPGSLEQYVHRCGRAGRS 508
                  666666778889999***************************************************************************6 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.013       7.5      28      50 ..     134     156 ..     116     221 .. 0.73
   2 !   35.9   0.1   1.4e-12   7.9e-10     227     322 ..     416     510 ..     380     515 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.013
    TIGR00614  28 dalvvmatGgGksLCyqlpavvs 50 
                  + + + +tG Gk L y +p v s
  MMETSP1061-20121228|22014_1 134 NLMAIATTGSGKTLSYSIPMVDS 156
                  34556679**********97743 PP

  == domain 2    score: 35.9 bits;  conditional E-value: 1.4e-12
    TIGR00614 227 ksGiiYClsrkkveqvaaeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDgl 322
                     ii+    k+ + v   Lqk+ ++  a h+ +++++r++  + f   ++ +++at     Gi   +v ++i y+ p s+e+Y    GRaGR  +
  MMETSP1061-20121228|22014_1 416 LL-IIFFGRIKTLQYVHGLLQKDKIQGIALHSQMNQKKRESQLNLFRSGKCPILLATDVAARGIHIKNVEYIINYDFPGSLEQYVHRCGRAGRSTV 510
                  33.777777788899999***************************************9999********************************865 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.5e-06   0.00086      26      86 ..     130     192 ..     106     204 .. 0.84
   2 ?    1.7   0.0     0.015       8.5     132     208 ..     258     338 ..     253     358 .. 0.74
   3 !   10.6   0.0     3e-05     0.018     276     345 ..     439     507 ..     414     513 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.5e-06
    TIGR04121  26 eegesglliapTGaGKTlavflpsliela..akekpkkglkvlyitPLkaLakdieraleapi 86 
                  +++ + + ia+TG+GKTl+  +p++ ++a  + +k+++ ++ l + P + La ++ + l+ + 
  MMETSP1061-20121228|22014_1 130 NNNLNLMAIATTGSGKTLSYSIPMVDSCAlvKGKKSRRYVHGLVLVPTRELALQVFKTLQIVT 192
                  444566779****************9998878888889*****************99998765 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.015
    TIGR04121 132 kdaeklfkdlravvvDElHeLlg.skRGdlleLaLarLrrlapelrvvgl.sATvgn..leeaaevllgeekeekaklvka 208
                  ++ ++lf++ r +v+DE  ++++ s   ++++  +  Lr+ + +l+   l sAT+    + + ++++ + +++ k+++v++
  MMETSP1061-20121228|22014_1 258 ESIQRLFESTRYLVIDEADQMATkSDMSQQVDRIINFLREKSSKLEKECLfSATLPRraIGKCNDWIHEPRATIKVDTVTV 338
                  66789***************98725678999999*******9999877655999965115678888888877555555554 PP

  == domain 3    score: 10.6 bits;  conditional E-value: 3e-05
    TIGR04121 276 aleialhHgsldkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnH 345
                   + ial H+ +++++Re   + +++gk  ++++T     G+  ++v+ +i+   p ++   + R GR++ 
  MMETSP1061-20121228|22014_1 439 IQGIAL-HSQMNQKKRESQLNLFRSGKCPILLATDVAARGIHIKNVEYIINYDFPGSLEQYVHRCGRAGR 507
                  567888.689*********************************************************986 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.5e-07   0.00032      55     197 ..     137     308 ..     120     380 .. 0.68
   2 !    7.3   0.0   0.00043      0.25     325     374 ..     460     509 ..     445     514 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.5e-07
    TIGR03817  55 vvatgtasGkslayllPvlsalaed......pratalylaPtkalaadqlravkelee..........rdvraatydGdtpaeerewirekaryvltnP.....dmlhlgilpsh.......arWakflralryvvvdechsy..rGvfGshvalvlrrlrrlcaryGaePvf 197
                  ++ ++t sGk+l+y +P++++ a        +    l l Pt+ la    ++++ +++          + +  a+y G   +e+ + + ++++++++       d+l +g   s        +   +++++ ry+v+de+ +   +  +  +v +++  lr  +++  +e  f
  MMETSP1061-20121228|22014_1 137 AI-ATTGSGKTLSYSIPMVDSCALVkgkksrRYVHGLVLVPTRELALQVFKTLQIVTKtanklsgksdKIMALAIYGGINREEQIDSLGKNSQFIVAATplrliDLLGIGSNDSNgkesvpnESIQRLFESTRYLVIDEADQMatKSDMSQQVDRIINFLREKSSKLEKECLF 308
                  34.4589***********9865544234543456789**********9999999888888999999866678899***9***************9876424444666655544331111111345689999999999999875224556677777777777766666666554 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00043
    TIGR03817 325 lkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrg 374
                  +++G+   + at+    G+ i  ++ ++   fPG +  +  + GraGr++
  MMETSP1061-20121228|22014_1 460 FRSGKCPILLATDVAARGIHIKNVEYIINYDFPGSLEQYVHRCGRAGRST 509
                  478999999999999*********************************86 PP

>> TIGR00580  mfd: transcription-repair coupling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.47   2.7e+02     502     518 ..     172     188 ..      86     225 .. 0.78
   2 !   18.6   0.0   1.8e-07    0.0001     688     756 ..     442     509 ..     415     514 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.47
    TIGR00580 502 avlvPTTlLaeQHfetl 518
                   vlvPT  La Q f+tl
  MMETSP1061-20121228|22014_1 172 LVLVPTRELALQVFKTL 188
                  46777777777777766 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 1.8e-07
    TIGR00580 688 aiaHgqmeeeeleevmleFlkkefdvLvcTtiiEsGidipnaNTiiierAdkfG.laqLyQLrGRvGRsk 756
                     H+qm++++ e+ ++ F +++  +L++T +   Gi+i n+  ii    d  G l q     GR GRs+
  MMETSP1061-20121228|22014_1 442 IALHSQMNQKKRESQLNLFRSGKCPILLATDVAARGIHIKNVEYIIN--YDFPGsLEQYVHRCGRAGRST 509
                  567***************************************98873..343441444444457777765 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.049        29     256     307 ..     132     191 ..     125     235 .. 0.76
   2 !   15.8   0.0   1.6e-06   0.00093     487     531 ..     443     487 ..     424     514 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.049
    TIGR00643 256 pmnRLlqGdVGsGKTvVavlalla..viesGyqv......almaPTeiLAeQhyeklrel 307
                  ++n + +   GsGKT+   + ++   ++ +G++       ++++PT  LA Q +++l+ +
  MMETSP1061-20121228|22014_1 132 NLNLMAIATTGSGKTLSYSIPMVDscALVKGKKSrryvhgLVLVPTRELALQVFKTLQIV 191
                  55666666789999998888887633455676632222337999**99999999988755 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 1.6e-06
    TIGR00643 487 llhgrlksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmv 531
                   lh++++++++e+ l+ Fr++++ iL+aT v   G+ + n+  ++
  MMETSP1061-20121228|22014_1 443 ALHSQMNQKKRESQLNLFRSGKCPILLATDVAARGIHIKNVEYII 487
                  69***********************************99988776 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.056        33       5      50 ..     140     193 ..     137     206 .. 0.67
   2 ?   -2.8   0.0      0.62   3.6e+02     278     311 ..     257     291 ..     249     293 .. 0.79
   3 !   13.2   0.0   9.1e-06    0.0054     272     370 ..     421     516 ..     382     525 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.056
    TIGR00595   5 vtGSGKtEvy.lkviek.vlakgksv......lvLvPEiaLtaqllkrlkerfg 50 
                   tGSGKt  y + ++++ +l kgk+       lvLvP   L+ q+ k l+   +
  MMETSP1061-20121228|22014_1 140 TTGSGKTLSYsIPMVDScALVKGKKSrryvhgLVLVPTRELALQVFKTLQIVTK 193
                  599999999853333321344444322223449****99999999998876655 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.62
    TIGR00595 278 eeelkkllpkariarlds.Dttrrkkalealleqf 311
                  +e +++l+++ r  ++d+ D++ +k +++++++++
  MMETSP1061-20121228|22014_1 257 NESIQRLFESTRYLVIDEaDQMATKSDMSQQVDRI 291
                  4678999*****99999549999999999998876 PP

  == domain 3    score: 13.2 bits;  conditional E-value: 9.1e-06
    TIGR00595 272 lGtekveeelkkllpkariarldsDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvgvlsaDsglklpdfRaaErtfqlltqvaGRagR 370
                   G  k  + ++ ll k +i+ ++      +k+ e++l+ f++gk  il+ t + a+G++ ++v+ +   +    l+   +R +    ++   v+GRag 
  MMETSP1061-20121228|22014_1 421 FGRIKTLQYVHGLLQKDKIQGIALHSQMNQKKRESQLNLFRSGKCPILLATDVAARGIHIKNVEYIINYDFPGSLEQYVHRCGRAGRST---VSGRAGD 516
                  566667778889999999*99999999999*********************************98766666666766666766655544...6677765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.72
# Mc/sec: 1182.40
//
Query:       MMETSP1061-20121228|22028_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00036   17.5   0.0    0.00045   17.2   0.0    1.1  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.1e-07   0.00045       8      76 ..      54     124 ..      45     129 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.1e-07
    TIGR04095   8 elrdyqkeaikaWfkn....ngrGilkmatGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaek 76 
                  +l+d+qk+++ aW++     +  Gil    G Gkt t L+l   l + +     +vv+P    ++ W kea++
  MMETSP1061-20121228|22028_1  54 KLYDFQKDGV-AWMAGlhlpKIGGILGDDMGMGKTFTTLSLLGGLMKAKTIKKAIVVAPVSV-LRNWEKEARQ 124
                  6799999998.587742223678**********************999999999*****875.588***9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 917.32
//
Query:       MMETSP1061-20121228|22024_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.6   0.1       0.37    8.7   0.0    2.3  2  TIGR00638 Mop: molybdenum-pterin binding domain


Domain annotation for each model (and alignments):
>> TIGR00638  Mop: molybdenum-pterin binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0      0.02        83      35      63 ..      93     121 ..      79     129 .. 0.78
   2 ?    8.7   0.0   8.9e-05      0.37      10      35 ..     193     218 ..     191     220 .. 0.90

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.02
    TIGR00638  35 LtavItaeSaaeLglkeGkevlaliKass 63 
                  L  ++   S++  + + G  +lal+K+ +
  MMETSP1061-20121228|22024_1  93 LPKAVRNMSVRDFNRQHGCDLLALLKSKD 121
                  55566777888888999*********986 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 8.9e-05
    TIGR00638  10 kgkVvsiedddvnaeVdlelgggtkL 35 
                   ++V + + ++ +a+V++++g+g+ +
  MMETSP1061-20121228|22024_1 193 IATVCKKRRGNGSANVEINVGEGQYI 218
                  589********************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1413.38
//
Query:       MMETSP1061-20121228|22038_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-44  150.9   2.1    1.6e-44  150.5   1.5    1.2  1  TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
     0.0002   19.3   0.6    0.00034   18.6   0.4    1.5  1  TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase


Domain annotation for each model (and alignments):
>> TIGR00560  pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.5   1.5   7.6e-48   1.6e-44       2     178 ..     117     294 ..     116     299 .. 0.92

  Alignments for each domain:
  == domain 1    score: 150.5 bits;  conditional E-value: 7.6e-48
    TIGR00560   2 kipnklTlvRiialpllillllenvlslqvslliggllfliaavtDylDGylARkyklvsnfGkllDPlaDkvlvlavliilv.ykglvpallliviiaRelvisglRvlaaekg.keviaanllGKlKtvaqivaiaalllysln...fklvvlliaqllyyiAavltllSfleYllkilk 178
                  k+p +lT +R +a+p+++ l++    +++  +l +g +f +a+vtD+lDG+lAR++  ++ fG++lDP+aDk++v++ li l   +g v a++ +vi+aRe+++s+lR+++a+ g + ++++ + GK+Kt + ++a+++ lly      +  +++ +++ l+y+ av+t+ S+  Y++++  
  MMETSP1061-20121228|22038_1 117 KLPDYLTYARCLAIPVFVALFY---SKVKGGHLYTGTIFALASVTDWLDGFLARRWDISTAFGAFLDPVADKLMVSTSLILLSgRYGAVAAVPSLVILAREIAVSALREWMAQRGeRDTVKVGYQGKVKTALTMMALTI-LLYVPAssgTSALLYKVGIPLLYMSAVITITSGSVYFIAAAP 294
                  79********************...89999***********************************************9999873799****************************9***********************.55544446777788889999*****************98765 PP

>> TIGR00473  pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.4   1.7e-07   0.00034      25      90 ..     150     211 ..     128     280 .. 0.68

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.7e-07
    TIGR00473  25 llillslilDslDGrvArktntvskfGkelDSlaDvvsFGvaPallaysvaynfeaililvaalfv 90 
                  +++ l+ + D lDG+ Ar+ + +  fG+ lD +aD +   v  +l++ s    + a+ ++ +++++
  MMETSP1061-20121228|22038_1 150 TIFALASVTDWLDGFLARRWDISTAFGAFLDPVADKLM--VSTSLILLSG--RYGAVAAVPSLVIL 211
                  445667789**************************865..6677777762..46666555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1594.43
//
Query:       MMETSP1061-20121228|22040_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|22057_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 814.69
//
Query:       MMETSP1061-20121228|22072_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       286  (0.0697221); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 1503.53
//
Query:       MMETSP1061-20121228|22083_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 771.09
//
Query:       MMETSP1061-20121228|22094_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1339.69
//
Query:       MMETSP1061-20121228|22092_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.83
# Mc/sec: 349.85
//
Query:       MMETSP1061-20121228|22122_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 464.83
//
Query:       MMETSP1061-20121228|22107_1  [L=822]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (822 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.45
# Mc/sec: 2411.00
//
Query:       MMETSP1061-20121228|22096_1  [L=815]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (815 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       225  (0.0548513); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.46
# Mc/sec: 2338.50
//
Query:       MMETSP1061-20121228|22108_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-84  282.1   0.0    1.6e-84  281.7   0.0    1.1  1  TIGR00476 selD: selenide, water dikinase
    5.7e-10   36.5   0.0    2.1e-09   34.7   0.0    1.8  1  TIGR01379 thiL: thiamine-monophosphate kinase
     0.0029   14.5   0.3      0.023   11.5   0.0    2.0  2  TIGR03267 methan_mark_2: putative methanogenesis marker protein 2


Domain annotation for each model (and alignments):
>> TIGR00476  selD: selenide, water dikinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  281.7   0.0   1.2e-87   1.6e-84       7     313 ..      30     357 ..      25     373 .. 0.89

  Alignments for each domain:
  == domain 1    score: 281.7 bits;  conditional E-value: 1.2e-87
    TIGR00476   7 rLtrftklkGtgCkvpskvlefllksveedklvddnllvGa..vlrDdaavye.rhnGlslvktvDvitPiVddPyllGriaaaNalSDiyAmGvleidallilvgvsnkls....ievvrevikGfkdaareaktalvGGhtilnpepvlGlavtgvcreeevitksgakvGdvLiLtKPlGtqvlvavekkldifekl.................lsilkeereliineAievmarlNrkaaelvnsknakAltDvtGFGlLGHaselaknsnvevrivieklPvlkkveelsklkgvalgaeeglesagslLlsalerekaallcdee 313
                   Lt+f+ lk    k+p+++l+ +l s+    l d n l  a   +  d+++ e r++G  +++t+D++ P+Vd Pyl+Gri aaN+lSD+yA Gv+ +d +l+l+  s ++s         ++++Gf+da+ ea+t+++GG+t+lnp+p++G+++t+v+  +e++  +ga+vGdvL+LtKPlGtqv+v+v+ + ++ ek                    +++ e e ++++A+  m +lNr a ++++++na+A+tDvtGFG+LGHa++l  n+  e  +++++lP+++++ ++     +  + +   + + ++L++++ +  a   c+e 
  MMETSP1061-20121228|22108_1  30 SLTEFSTLKDEPXKIPQDELQEMLSSLS---LGDGNNLGTAdgRIALDCSIREtRQGGHFIISTTDFFFPLVDSPYLQGRIGAANVLSDLYAEGVQHCDFVLMLLAASRDMSpeerTICTNLMVRGFRDACTEAETTVTGGQTVLNPWPIIGGVATSVVTRDEYVSSDGARVGDVLVLTKPLGTQVAVNVHEWRKKNEKHghdrfwdrilehgengeALVTDSEAEEMMHKAVRSMSKLNRLASKIMTKHNAHAATDVTGFGILGHAQNLMDNQVAECGVELHTLPCIANTLKVNDEILNFRLRVGYSAETSGGLMISMSESDAMEYCAEL 357
                  69***********************754...555444422211344899998637899******************************************************6653335689***********************************************************************999999899999*********9998899***********************************************************************999887776665544444444999999999888888765 PP

>> TIGR01379  thiL: thiamine-monophosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   1.5e-12   2.1e-09      51     242 ..      95     317 ..      70     334 .. 0.70

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 1.5e-12
    TIGR01379  51 FleetppedlgwkavavnlSDlaAmGat.Pkalllslglpedldeee....leallkGlkelakkygvklvGGDtvksselvvsvtaiGevekerallRsgAkpGDlvvVtgtlGdsaa.glelllk.....................kaeveeeaeeellerhlrPeprve...egealaklanaaiDvSD.GLasdlehiaeaSgvgieieadkLPlssel 242
                  F+   +p   g+  +a  lSDl+A G +   ++l+ l+++ d++ ee     + +++G+++++++ + ++ GG tv  +  ++   a  +v +++ +  +gA++GD++v+t +lG   a  ++ + k                     +a v+++++ee+++++ r + +++      + ++ a+aa+Dv+  G++  ++++++    +  +e+++LP   ++
  MMETSP1061-20121228|22108_1  95 FPLVDSPYLQGRIGAANVLSDLYAEGVQhCDFVLMLLAASRDMSPEErticTNLMVRGFRDACTEAETTVTGGQTVLNPWPIIGGVATSVVTRDEYVSSDGARVGDVLVLTKPLGTQVAvNVHEWRKknekhghdrfwdrilehgengEALVTDSEAEEMMHKAVRSMSKLNrlaSKIMTKHNAHAATDVTGfGILGHAQNLMDNQVAECGVELHTLPCIANT 317
                  3444477777888888889*******972566677788887776555222245699**********************988889999999*************************865415566666777777777777777777776445555556666666666555443110333333367778887755777777777777776777777777765444 PP

>> TIGR03267  methan_mark_2: putative methanogenesis marker protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   1.7e-05     0.023     103     179 ..     137     213 ..      96     229 .. 0.81
   2 ?    0.8   0.0     0.032        43     201     247 ..     266     312 ..     249     321 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.7e-05
    TIGR03267 103 lsindkdvcrevl.eGlreGvkkfgvpvvGGhvhpdtkynaldvaivGiakkdaiirsdtakeGdkvivaidldGriy 179
                  +s +++ +c +++ +G+r+  +   + v GG +  + ++  +    + ++ +d  + sd a+ Gd ++++  l  ++ 
  MMETSP1061-20121228|22108_1 137 MSPEERTICTNLMvRGFRDACTEAETTVTGGQTVLN-PWPIIGGVATSVVTRDEYVSSDGARVGDVLVLTKPLGTQVA 213
                  46678899*998758****************99765.677777777889999****************9988876665 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.032
    TIGR03267 201 ldvlveiaekklvkagkdisnpGliGtlgmlleasrvGaevdlekip 247
                    +  +i  k+ ++a+ d++  G++G    l++     + v+l+ +p
  MMETSP1061-20121228|22108_1 266 NRLASKIMTKHNAHAATDVTGFGILGHAQNLMDNQVAECGVELHTLP 312
                  455677889999***************99999988888888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 1773.05
//
Query:       MMETSP1061-20121228|22143_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1486.10
//
Query:       MMETSP1061-20121228|22148_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-17   60.1   0.0    9.5e-17   58.9   0.0    1.5  2  TIGR00046 TIGR00046: RNA methyltransferase, RsmE family


Domain annotation for each model (and alignments):
>> TIGR00046  TIGR00046: RNA methyltransferase, RsmE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       0.3   1.2e+03      19      40 ..      79     100 ..      69     108 .. 0.76
   2 !   58.9   0.0   2.3e-20   9.5e-17      74     230 ..     171     346 ..     163     353 .. 0.88

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.3
    TIGR00046  19 teeevhHlvrvlRlkkgdklkl 40 
                  ++ +  H +++l l++gd +  
  MMETSP1061-20121228|22148_1  79 DDYRTVHAAKILGLQNGDSIRA 100
                  5556679999999999999875 PP

  == domain 2    score: 58.9 bits;  conditional E-value: 2.3e-20
    TIGR00046  74 lplkvhlaivlikgkklekiirklteLGvskiipllaersvvkldae.akkKlerwqkivieaaeQsgrnivpeikavknlk...............eklaeaeeealklnlhleasalsknle.ieakkiviiiGPEGGfsek.Eiqllkek.gfkevsLgkriLRteTAvvaal 230
                   p++v+l+++l+++ ++ +i++ + ++Gv  +i+  a+   + +  + +  K e  q  +ie++ Q g  ++p++++v nl                 ++ +  + ++ ++  +   +++ +++ + + +ivi++GPEGG+ e+ E +++k+  gf+++ Lg r+LR++ Av   l
  MMETSP1061-20121228|22148_1 171 DPINVSLILALPRPLQIGRILPMISQIGVDHLILTSAAKVPKDYFGShLFRKPEVLQEKLIEGLCQAGDVRLPKLRVVRNLRhfllseefetlfpkeSYARVLTHPKRHDDSEEPLRMSEVQFPtNSPPRIVIAVGPEGGWEEPtELNMFKNDcGFQQITLGSRTLRSDVAVSGLL 346
                  6899****************************************9999***************************************99988888854455555556777778888899999995559**************9559***99754***************9986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1759.85
//
Query:       MMETSP1061-20121228|22166_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1884.26
//
Query:       MMETSP1061-20121228|22180_1  [L=809]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (809 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.44
# Mc/sec: 2426.80
//
Query:       MMETSP1061-20121228|22201_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.33
# Mc/sec: 671.94
//
Query:       MMETSP1061-20121228|22227_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 2135.52
//
Query:       MMETSP1061-20121228|22247_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|22252_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    5.9  10.8          2    5.7   7.5    1.0  1  TIGR02223 ftsN: cell division protein FtsN


Domain annotation for each model (and alignments):
>> TIGR02223  ftsN: cell division protein FtsN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.5   0.00048         2     173     228 ..       4      59 ..       1      63 [. 0.82

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00048
    TIGR02223 173 etekkaskekeakkkqkalkkktaekqsnskpietaqkadkadktkpkekeKaeka 228
                  +++ +++++ e +k +k+  +k +   s+  p+   + a   +  kpk+  K+ +a
  MMETSP1061-20121228|22252_1   4 QQQQQQQQQREERKNYKEKRQKAPAIDSDADPHPLIPRAPFREFHKPKPTPKSRRA 59 
                  34444445778899999999999999**************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      195  (0.0475378); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1061-20121228|22265_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.57
# Mc/sec: 773.73
//
Query:       MMETSP1061-20121228|22266_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2188.82
//
Query:       MMETSP1061-20121228|22271_1  [L=483]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.4e-113  375.5   0.0   9.3e-113  375.2   0.0    1.0  1  TIGR00234 tyrS: tyrosine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00234  tyrS: tyrosine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  375.2   0.0  2.3e-116  9.3e-113       5     403 ..      63     480 ..      60     483 .] 0.94

  Alignments for each domain:
  == domain 1    score: 375.2 bits;  conditional E-value: 2.3e-116
    TIGR00234   5 nilkelkkrgleeivseeeeelekklkkneklklylGvdPtaqslHlGhlvplkkLrdfqqaGhevvvligdataligdpsgkkevrkvleeeevqenaesikkqlarfldf......d..kgklkfvnnsewlkklnyldfirdlgkifsvnrmlardafssRleen.glslsefiYpllQayDfvaLdkd...dlqlGGsDQwgNilagidLirrnlpskkqfgltvpLltkadGekmGkseggavsldes..spydfyqkvintpdelvkkilklftflgleeieklveekspslrevkellakeitklvhgeeaaekaealseaifsrn.....lvpd.elkikrlekfggeielidllvksklvksksearrdikqggvkingekvkdleqilkeae..ekrvlvlrvGKkkflri 403
                  + lk++  rg+  +++ + e  +k + +++ + +ylG+d+ta+slH+G l+++++Lr++q+ Gh++vvlig+ t ++gdp+gk+e rk+l++e v++n++ i++ ++ fl+f      d   + +++vnn +wl +lnyldf+r+ g+ fs+nrml+ +++++Rl+++ + s+ ef+Y++lQayDf  L++    +lqlGGsDQwgN+ +g +L rr   + + f lt+pL+tk+dG+kmGk++gga++l+ +  s yd +q+++nt+de+v k+lklft+l leeiekl+  ++ +++++k  la e t+++hg+++  + +++ +++f+++      +p   +++++le  g   + +dl  + +l+ksk+earr i +gg k++gek+++   +l+ a+   k ++vlr GKk+   +
  MMETSP1061-20121228|22271_1  63 DFLKTMRDRGFLHQCTGIAELDAKFMAGDDVVTAYLGFDATADSLHVGSLLQIMILRHLQKSGHRPVVLIGGGTSKVGDPTGKDESRKLLDDEGVARNTAGISEVFKTFLEFaeegsdDnaANAAIMVNNNDWLGNLNYLDFLREYGTQFSINRMLSFESVKQRLSREaPFSFLEFNYMILQAYDFLELYRRhnaTLQLGGSDQWGNMVSGTELGRRCDGA-QLFALTAPLITKSDGTKMGKTAGGAIWLNADklSEYDYWQFWRNTSDEDVIKFLKLFTELPLEEIEKLETLTGSAINQAKIVLADEATAMLHGRDSLTEIHKTVANMFKGSgestdGLPRiFVEASELEGDG--KRFADLFMELELSKSKKEARRLIAGGGAKLDGEKIENEMGALTMADfdGKTEVVLRAGKKRAGVV 480
                  67899999*********77777888888************************************************************************************999997357889*******************************************************************99***************************6.9****************************9999*****************************************************************************9988885555034444444443..69**********************************9998888777778999********97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (483 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.18s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 1992.21
//
Query:       MMETSP1061-20121228|22285_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   12.9   0.0      0.056   11.7   0.0    1.6  1  TIGR03678 het_cyc_patell: bacteriocin leader peptide, microcyclamide/patellamide family


Domain annotation for each model (and alignments):
>> TIGR03678  het_cyc_patell: bacteriocin leader peptide, microcyclamide/patellamide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.4e-05     0.056       8      21 ..      16      29 ..      14      33 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.4e-05
    TIGR03678  8 PnqgqPViRslvgk 21
                 Pnq+ PV+R  +g 
  MMETSP1061-20121228|22285_1 16 PNQSHPVVRDSAGS 29
                 *********99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 622.23
//
Query:       MMETSP1061-20121228|22273_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.20s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2626.58
//
Query:       MMETSP1061-20121228|22292_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       311  (0.0758167); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1771.70
//
Query:       MMETSP1061-20121228|22317_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.038   11.0   2.5      0.048   10.7   1.7    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23
      0.082    8.3   7.0      0.093    8.1   4.8    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   1.7   2.3e-05     0.048      77     165 ..      20     103 ..      11     121 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 2.3e-05
    TIGR00601  77 kKavkakaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdretlvvGsereetveeim 165
                  +K ++ k+a P++ p+ ap+p++++ +as +++++        +es +eee+   +  + d+ ++ +          G+++eetv ei+
  MMETSP1061-20121228|22317_1  20 SKESRQKTALPESPPAPAPAPAKAPLQASAPAATARNDDDNDDDESIVEEEEIIVVIDEDDGDDDDDD-----DDDDGNDKEETVVEIV 103
                  44555567888888888888887777777777777777777777777777777777777776666333.....2334777777777776 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   4.8   4.6e-05     0.093     711     790 ..      19      98 ..       4     114 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 4.6e-05
    TIGR00927 711 eskdeeepaklpevtvtpapapedkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseeka 790
                   sk+  + + lpe   +papap +   q   p++    ++ ++  e+  ee+e  ++ + ++++ ++++ +++g+++e +
  MMETSP1061-20121228|22317_1  19 ASKESRQKTALPESPPAPAPAPAKAPLQASAPAATARNDDDNDDDESIVEEEEIIVVIDEDDGDDDDDDDDDDGNDKEET 98 
                  5777888899*************************999999999999999999997777776666666665555444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 879.93
//
Query:       MMETSP1061-20121228|22327_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.17s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|22328_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|22353_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-08   30.0   2.0    5.4e-08   29.9   1.4    1.0  1  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    4.4e-05   20.2   1.3    5.5e-05   19.9   0.9    1.2  1  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
     0.0032   13.8   0.8     0.0031   13.8   0.5    1.0  1  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
     0.0036   14.0   5.1     0.0041   13.9   3.6    1.0  1  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase


Domain annotation for each model (and alignments):
>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   1.4   5.3e-11   5.4e-08     166     215 ..       2      52 ..       1      53 [] 0.90

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 5.3e-11
    TIGR01525 166 adklasyfvplvlaialltflvwlalgalk.aealeravavLvvacPcaLg 215
                  +d++a+ ++p+v+++al++  +++++g     ++  r+++++v+acPcaL+
  MMETSP1061-20121228|22353_1   2 VDSFAKVYTPVVVVAALAMCTFSWLWGPAVgRDWTSRGLSLVVIACPCALV 52 
                  799****************99999999944349****************97 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.9   5.3e-08   5.5e-05     161     201 ..       2      52 ..       1      53 [] 0.74

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 5.3e-08
    TIGR01512 161 idrlaekytlvvlliallialvssllv..........alvlLvvasPCaLv 201
                  +d++a+ yt+vv+++al+++ +s+l            +l l+v+a+PCaLv
  MMETSP1061-20121228|22353_1   2 VDSFAKVYTPVVVVAALAMCTFSWLWGpavgrdwtsrGLSLVVIACPCALV 52 
                  799************9999887765321112222222899**********9 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.5   3.1e-06    0.0031     135     181 ..       5      52 ..       1      53 [] 0.61

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 3.1e-06
    TIGR01494 135 lalifllalllla..llvfllvlielktflkiilralillviaiPiaLp 181
                  +a +++ +++++a  +++f + +    +   +  r l+l+via+P+aL 
  MMETSP1061-20121228|22353_1   5 FAKVYTPVVVVAAlaMCTFSWLWGPAVG-RDWTSRGLSLVVIACPCALV 52 
                  5555555555444004444444444333.57889*************95 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   3.6     4e-06    0.0041     186     227 ..       2      51 ..       1      52 [. 0.68

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4e-06
    TIGR01511 186 Adkvaslfvpvviaiavl.tfviWll..al.....evavtvliiaCPcal 227
                   d  a++++pvv++ a+    + Wl+  a+      +  + ++iaCPcal
  MMETSP1061-20121228|22353_1   2 VDSFAKVYTPVVVVAALAmCTFSWLWgpAVgrdwtSRGLSLVVIACPCAL 51 
                  5899******998877641334565522652222246799*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.07u 0.16s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|22358_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.28
# Mc/sec: 177.50
//
Query:       MMETSP1061-20121228|22348_1  [L=524]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (524 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 2881.76
//
Query:       MMETSP1061-20121228|22352_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.24
# Mc/sec: 2942.26
//
Query:       MMETSP1061-20121228|22372_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.7   0.7      0.018   13.6   0.5    1.0  1  TIGR03483 FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension


Domain annotation for each model (and alignments):
>> TIGR03483  FtsZ_alphas_C: cell division protein FtsZ, alphaProteobacterial C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.6   0.5   4.3e-06     0.018      26      77 ..       5      56 ..       2      62 .] 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.3e-06
    TIGR03483 26 seedrgplgLlkRlanglsrRdeeadeAalepaaraaaaqpvealpkreral 77
                  ee+   +g l++  +g   Rd+ +d+Aa + aa aa  +pv+a    + + 
  MMETSP1061-20121228|22372_1  5 AEEEDRVMGDLQKGSTGAPTRDDSNDAAAATVAAVAAPSDPVDANASANASA 56
                 5677778999*****************9999999999999999865544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 355.80
//
Query:       MMETSP1061-20121228|22373_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.09s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 442.16
//
Query:       MMETSP1061-20121228|22373_2  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 304.94
//
Query:       MMETSP1061-20121228|22371_1  [L=606]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (606 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.45
# Mc/sec: 1777.45
//
Query:       MMETSP1061-20121228|22375_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-12   43.3   0.0    1.1e-11   42.2   0.0    1.6  1  TIGR00519 asnASE_I: L-asparaginases, type I
      3e-11   40.6   0.0    5.8e-11   39.7   0.0    1.4  1  TIGR00520 asnASE_II: L-asparaginases, type II
    2.1e-09   34.4   0.0      3e-09   33.9   0.0    1.2  1  TIGR02153 gatD_arch: glutamyl-tRNA(Gln) amidotransferase, subunit D


Domain annotation for each model (and alignments):
>> TIGR00519  asnASE_I: L-asparaginases, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.2   0.0   7.7e-15   1.1e-11       3     151 ..       2     172 ..       1     183 [. 0.69

  Alignments for each domain:
  == domain 1    score: 42.2 bits;  conditional E-value: 7.7e-15
    TIGR00519   3 dvsilstGGtiaskvdertgavapaftadellsav..pelldi...anidaeavmnilsenmkPeyWveiAeavkkel....dd.adGvviaHGtDtmaytaaALsfm...........lktkkPvvltGaqrssdrpssDaklnllsavraAae.eikevvvvlhgvtsd 151
                  +++ ++tGGti       t++   ++  +   +     +l ++      +  +v   +s++++  +  e+ + + +++     +  dG+vi+HGtDtm+ ta  L+             l  ++Pv++tGa r+  + +sDa  nl  av a +  +++ v +++hg +  
  MMETSP1061-20121228|22375_1   2 KILFVQTGGTIDKDYPRTTNGWGFEISEEPAFRRLlkDRLSNPppsFGYECLSVCRKDSTELTDSDRSELVRCLEEAIgvshPQpPDGIVITHGTDTMEETARYLAEAqaqarararneLFGGVPVLITGAMRPERFSNSDADFNLGMAVGAIQLlPPGFVGICMHGRVLR 172
                  57788999999999999899887766666555443113444441113344577888899999999999988877777622222347************98876554321111111111144479**************************8876516677999***98754 PP

>> TIGR00520  asnASE_II: L-asparaginases, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   4.3e-14   5.8e-11      77     159 ..      55     151 ..      47     155 .. 0.72

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 4.3e-14
    TIGR00520  77 ivnvgsqdlneevllklakrisealasdd...vdGivithGtDtleetayfldlt.vksd..........kPvvlvGamRpatsvsaDGplnLYnav 159
                  +++ +s++l ++   +l + ++ea+  ++    dGivithGtDt+eeta +l  +  ++           +Pv + GamRp     +D  +nL  av
  MMETSP1061-20121228|22375_1  55 VCRKDSTELTDSDRSELVRCLEEAIGVSHpqpPDGIVITHGTDTMEETARYLAEAqAQARararnelfggVPVLITGAMRPERFSNSDADFNLGMAV 151
                  6777788888777777777777776544311159***************8885431332111222344447**********************9988 PP

>> TIGR02153  gatD_arch: glutamyl-tRNA(Gln) amidotransferase, subunit D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   2.2e-12     3e-09     137     212 ..      84     170 ..      56     182 .. 0.78

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 2.2e-12
    TIGR02153 137 eegadgvvvahGtDtmaytaaaLsFmlkklp..........vPvvlvGaqRssDRPssDaalnliaavkvake.diaevvvvmhget 212
                   ++ dg+v++hGtDtm+ ta  L+ +  +++          vPv+++Ga R      sDa +nl  av + +  + + v ++mhg  
  MMETSP1061-20121228|22375_1  84 PQPPDGIVITHGTDTMEETARYLAEAQAQARararnelfggVPVLITGAMRPERFSNSDADFNLGMAVGAIQLlPPGFVGICMHGRV 170
                  46789***********98887776554332111222333338*********999999***********999988**********975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1229.90
//
Query:       MMETSP1061-20121228|22376_1  [L=1042]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   12.4   0.1      0.017   11.5   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   4.2e-06     0.017     281     303 ..     889     911 ..     865     920 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.2e-06
    TIGR01982 281 DlHpGNilvakdgkiialDfGiv 303
                  D H+ Nil++++g+ii +DfG v
  MMETSP1061-20121228|22376_1 889 DRHNANILMDRQGNIIHIDFGFV 911
                  99*******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1042 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.51u 0.16s 00:00:00.67 Elapsed: 00:00:00.38
# Mc/sec: 3619.28
//
Query:       MMETSP1061-20121228|22387_1  [L=891]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (891 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 3360.07
//
Query:       MMETSP1061-20121228|22413_1  [L=420]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (420 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 2217.42
//
Query:       MMETSP1061-20121228|22401_1  [L=1311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-07   26.9   0.3    3.1e-05   19.8   0.1    2.8  3  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0069   13.1   0.0      0.014   12.1   0.0    1.5  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.03        61     506     559 ..     101     155 ..      83     187 .. 0.80
   2 !   19.8   0.1   1.5e-08   3.1e-05     608     665 ..     268     327 ..     256     337 .. 0.87
   3 !    3.3   0.0    0.0014       2.9     778     865 ..     569     666 ..     554     673 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.03
    TIGR03903 506 ravLvvGeaGiGksrLv.helvekvrgregavlecaClPeqensaLfPvlrlvra 559
                  + vLv+G +G Gk  Lv h+l   v   +g ++  +    ++ns   P   +v+a
  MMETSP1061-20121228|22401_1 101 EFVLVSGLSGTGKTVLVqHTLKGPVTKMGGYFVYGKVDQRNKNSPQRPYAPFVAA 155
                  568*************957888889888888888888888888777777777766 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 1.5e-08
    TIGR03903 608 levsparqkellldvleqllvsl..argaPvLLlveDlqWaDsatlefLaaLaeasaaar 665
                   ++++a  ++ l  vl ++l ++  a+  P++Ll++DlqW D+ tl +L  L  +s++ar
  MMETSP1061-20121228|22401_1 268 SKMATADSQKQLARVLRSFLETIcdAQTRPMVLLIDDLQWSDPGTLVLLHSLLLSSSNAR 327
                  457899999999********997447889**********************999888776 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.0014
    TIGR03903 778 retaqlaatlGrevdaelLada............ssrdeaeldesLraLvdarllyaqdrvgrasYlFrhaLiRdaaYesmlaavRrevhervaaallar 865
                  +et+ +a  lG e++ +lL +             s  +   l+esL +L+ ++l+    + +r  + Frh  + +aa   ++  +R    + +++ ll++
  MMETSP1061-20121228|22401_1 569 QETLMVAGCLGSEFNLKLLHQSmpnittpalsssSLYPAEILHESLEELIAKDLVRIDAKGER--FQFRHDKVQQAAIALVPGDQRDLFCTNIGRRLLEQ 666
                  6777778888888887777654111111111111344555689***********988776666..9**************99999999999999888765 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0     7e-06     0.014      16      94 ..      70     151 ..      57     189 .. 0.70

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7e-06
    TIGR02928  16 rivhRdeqieelakalkpilr.gsrpsn.....vliyGktGtGKtavtkkvlkeleeaaeekdvrvstvyvnCqelsteyqvlve 94 
                  ++ +R++q ++l ++l   +  g+++++     vl++G +GtGKt+ ++++lk   +++      +++ +v+ +++++ ++  + 
  MMETSP1061-20121228|22401_1  70 QLFDREQQQKDLIEILDRSMGrGWSSNKngkefVLVSGLSGTGKTVLVQHTLKGPVTKMG---GYFVYGKVDQRNKNSPQRPYAP 151
                  7899************876654887765566679**************998765444333...3466666666666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      158  (0.0385178); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.69u 0.15s 00:00:00.84 Elapsed: 00:00:00.40
# Mc/sec: 4325.94
//
Query:       MMETSP1061-20121228|22414_1  [L=487]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-85  284.1   0.0    3.8e-85  283.9   0.0    1.0  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    1.6e-76  255.9   0.0    3.1e-76  254.9   0.0    1.4  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    1.7e-58  196.1   0.0    4.8e-29   99.1   0.0    2.5  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    3.7e-13   47.6   0.0    0.00049   17.7   0.0    3.1  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    4.2e-11   40.0   0.0    2.7e-08   30.7   0.0    3.0  3  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    3.2e-07   27.3   0.0    6.3e-07   26.3   0.0    1.4  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
    1.9e-05   21.7   0.0        0.2    8.4   0.0    3.0  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0026   14.4   0.0       0.34    7.4   0.0    2.8  3  TIGR02028 ChlP: geranylgeranyl reductase
     0.0055   13.1   0.0      0.012   12.1   0.0    1.4  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
  ------ inclusion threshold ------
       0.01   12.7   0.0      0.015   12.2   0.0    1.2  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.013   12.5   0.0       0.65    6.9   0.0    2.4  3  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.026   11.1   0.1        1.3    5.5   0.0    2.1  2  TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor)
      0.028   11.5   0.0      0.046   10.8   0.0    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.9   0.0   1.2e-87   3.8e-85       1     385 [.      36     481 ..      36     483 .. 0.95

  Alignments for each domain:
  == domain 1    score: 283.9 bits;  conditional E-value: 1.2e-87
    TIGR01988   1 divIvGgGlvGlalAlaLassa.dlkvalveakaaek...akspafdnRvsAlsaasiellekigvwdklekkraqpiqkirvsdagskgalefdaaevg.....aeaLgyvvenkvlqqaLlealqekknkvtllapaeveeleresdaveltlsdgetleakLlvgADGanSkvrqaagikttewnyeqsavvanvkleeph..qdtAwerFlp.egplAlLPlkd.nrsslVwslspeeaeellalseeeflaelnaafgsrlg.......................................................aitlvgeraafPLslthakryvaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaallaatdllnrlfsndfpplrllRnlGLrlleklpplkkllikqa 385
                  d+ IvGgG+vG+++A  La++  +l+val+++k+ +        a++ R++Als++s ++l k  v ++l    +  +++++v+++ s+++l+f +++++     a +Lg   e + l   L+++++ ++ k+ ++++ +  ++  +++ v+++++d+ +l+++LlvgADG nS+vr++agi+  + +yeqsa+ ++v+le+    +++A++r+l+  gplAlLP     ++ +Vws++ e+ ++ ++ s+e+++ +ln+ +++  +                                                         t+++++++fPLs  +a ++v+ rvaliGd AhtvhP+AGQGlNlGl Dv+ L++++++a  +g di   ++L++Y++ r +d  + l+ +++l+rlf+n+  pl+++ ++G++++++++pl+++l+  a
  MMETSP1061-20121228|22414_1  36 DVTIVGGGVVGSSMANLLAKKLpNLRVALLDSKEKPPsppLPGRAPSPRSYALSPRSLTILGKS-VQSRLP---IGYYDSMQVWQDFSPATLTFTSNDLDpepqkAIYLGGCCEDEALVSELYQEIRGST-KLLFNTSLDSFNIGDSNNLVTVKTKDKFELKTALLVGADGGNSWVRKTAGIPRIGGKYEQSALTFTVSLEKTSsmNGRAFQRYLSdGGPLALLPTYSpSHAVIVWSTTAENVSMWKNSSNEDLVTHLNDCLREGPQripplmeeiqsphfsnqnsifsnllygadrvldtihyglamasqhpqpefrippkISTIDSPKFTFPLSCYNATTFVKGRVALIGDSAHTVHPMAGQGLNLGLGDVEFLVSCIKKAYDSGMDIS--SFLHEYNSIRHKDISVSLGGIHALQRLFHNQSVPLQHAKTFGINTIQNFGPLRRQLAVAA 481
                  899****************8879*********977766663334899**************998.555555...599********************99988887889*********************9.699999999999999*******************************************************99989********98357*******99899*******************************9976699****************************************************88899****************************************************************9..89****************************************************998655 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  254.9   0.0   9.8e-79   3.1e-76       1     436 [.      35     477 ..      35     478 .. 0.86

  Alignments for each domain:
  == domain 1    score: 254.9 bits;  conditional E-value: 9.8e-79
    TIGR01989   1 lDvvivGgGlvGlalAaalkknpslkdkkvllldavdapklksrkyekksevysnRvssitpasielfkkigawdhie.kdRikkfkklqvwdscskalieferkdv.ke.....elafiiEndvilasllerlkeeksdnvkvknkaklksvtlpkkspndnsnlvkikledgetlktklliGADGanSkvRkaanikvtgwnYnqsavvatlklee.atenevawqRFlps.GPiAlLPl.sdnlsslvWstseeeakrlkslpeeeFvdalNaaldleysdlnklelvdea.....veklnedikfrte...................erkseeqvPPkvievvdksRaaFPLklkhadeYvtervALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLkkyererkakNvallalvdklkklYstdfppvvalRtlglnltnkisplKnli 436
                  +Dv ivGgG+vG ++A  l+k  +l +++v lld++++p         ++  +s R  +++p+s +++ k      ++ +  i  ++ +qvw+  s a+++f  +d+  e     +l+   E + +++ l+++++ ++    k++ ++ l s+++      d++nlv++k++d  +lkt ll+GADG nS vRk+a+i+  g +Y+qsa+  t+ le+  + n +a+qR+l+  GP+AlLP  s   + +vWst+ e+ ++ k+ ++e+ v  lN+ l+ + +  + l    ++      + +++++                        + + e+++PPk+ ++++ +  +FPL+  +a  +v+ rvAL+GD AH+vHP+AGqG+NlG++Dve Lv+ +++a  +G+d+ s   L++y++ r++   + l+ ++ l++l++ +  p+  ++t+g+n++++ +pl++++
  MMETSP1061-20121228|22414_1  35 FDVTIVGGGVVGSSMANLLAK--KLPNLRVALLDSKEKPPSP----PLPGRAPSPRSYALSPRSLTILGKS-----VQsRLPIGYYDSMQVWQDFSPATLTFTSNDLdPEpqkaiYLGGCCEDEALVSELYQEIRGST----KLLFNTSLDSFNIG-----DSNNLVTVKTKDKFELKTALLVGADGGNSWVRKTAGIPRIGGKYEQSALTFTVSLEKtSSMNGRAFQRYLSDgGPLALLPTySPSHAVIVWSTTAENVSMWKNSSNEDLVTHLNDCLREGPQRIPPLMEEIQSphfsnQNSIFSNL----LygadrvldtihyglamasqHPQPEFRIPPKISTIDSPK-FTFPLSCYNATTFVKGRVALIGDSAHTVHPMAGQGLNLGLGDVEFLVSCIKKAYDSGMDISS--FLHEYNSIRHKDISVSLGGIHALQRLFHNQSVPLQHAKTFGINTIQNFGPLRRQL 477
                  7***************99975..689*********6666654....478999***************9887.....330345889*****************998874221112246667899999999999998887....99999999999999.....899*****************************************************98899*********9737******647899*******************************76554443322222222222322333333....13333666677778888776778899*******998887.************************************************************76..689************************************************9875 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.1   0.0   5.2e-30   1.6e-27       1     245 [.      36     290 ..      36     296 .. 0.83
   2 !   99.1   0.0   1.5e-31   4.8e-29     257     378 ..     357     479 ..     352     482 .. 0.94

  Alignments for each domain:
  == domain 1    score: 94.1 bits;  conditional E-value: 5.2e-30
    TIGR01984   1 dviivGgglvGlslAlaLsrks.klkialieaksaeaa..kssf..darslalsagskqileklgiweklekeatpikdihvsdrgafgalelraeev.....alpaLGyVveladlkqallkrlaekkkiklyapaelkeierekdeaevkldneqkleakLlvaAdGanskvreslsiaeeevdyeqtalianvkvekp..henlAfErFte.eGplAlLPlkdayrlslvwclkkeqaeelanlsdaeflaeLqk 245
                  dv ivGgg+vG+s+A+ L++k  +l++al+++k+   +   +++    rs als  s  il k  + ++l        +++v +     +l ++++++     +   LG   e + l + l++++   +k+   +     +i  +++ ++vk +++ +l+++Llv AdG ns vr+ + i+    +yeq+al++ v++ek    +++Af r+ +  GplAlLP     +  +vw++  e++++++n s+++++++L++
  MMETSP1061-20121228|22414_1  36 DVTIVGGGVVGSSMANLLAKKLpNLRVALLDSKEKPPSppLPGRapSPRSYALSPRSLTILGK-SVQSRLP--IGYYDSMQVWQDFSPATLTFTSNDLdpepqKAIYLGGCCEDEALVSELYQEIRGSTKLLFNTSLDSFNIGDSNNLVTVKTKDKFELKTALLVGADGGNSWVRKTAGIPRIGGKYEQSALTFTVSLEKTssMNGRAFQRYLSdGGPLALLPTYSPSHAVIVWSTTAENVSMWKNSSNEDLVTHLND 290
                  899*****************999********98755442445545699************987.3444432..3445566666666656666666555111105567********************999988888888899999999999999999***************************************9987622689*****986268**********9************************999986 PP

  == domain 2    score: 99.1 bits;  conditional E-value: 1.5e-31
    TIGR01984 257 vgerkaypLklviaeeqvkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledar.kdlGeaallqeylkerkeDraatigltdeLvrlfsnkllllralRnlgLlalenlpplkkrlak 378
                  ++++ ++pL+ + a + vk rv+lig++A+t+hP+AgQG+NlGl Dv+ L++ +++a+ + +  + +l+ey++ r++D ++ +g ++ L+rlf n++ +l+++++ g+ +++n+ pl+++la 
  MMETSP1061-20121228|22414_1 357 DSPKFTFPLSCYNATTFVKGRVALIGDSAHTVHPMAGQGLNLGLGDVEFLVSCIKKAYdSGMDISSFLHEYNSIRHKDISVSLGGIHALQRLFHNQSVPLQHAKTFGINTIQNFGPLRRQLAV 479
                  67899****************************************************8544445899****************************************************9985 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.6e-06   0.00049       1      35 [.      35      71 ..      35      77 .. 0.92
   2 !   13.4   0.0   3.2e-05      0.01     105     168 ..     160     226 ..     147     247 .. 0.77
   3 !   12.8   0.0   4.9e-05     0.015     257     286 ..     370     399 ..     352     401 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.6e-06
    TIGR02032  1 yDvvvvGaGpaGssaAlrlakk..GlrVlllekkelp 35
                 +Dv +vG+G  Gss+A  lakk   lrV+ll+ ke+p
  MMETSP1061-20121228|22414_1 35 FDVTIVGGGVVGSSMANLLAKKlpNLRVALLDSKEKP 71
                 7********************97779******99876 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 3.2e-05
    TIGR02032 105 gaelllettvlsveiedekvkvevredekkevtakivigAdGakskvakklglk...kekrelaval 168
                  + +ll +t + s  i d +  v+v++++k e++  +++gAdG +s v+k  g++    ++++ a++ 
  MMETSP1061-20121228|22414_1 160 STKLLFNTSLDSFNIGDSNNLVTVKTKDKFELKTALLVGADGGNSWVRKTAGIPrigGKYEQSALTF 226
                  46889999999999999888888888889********************999553333444444443 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 4.9e-05
    TIGR02032 257 dektvtgnvllvGDAAglVkPltGeGIaya 286
                  +++ v+g+v l+GD+A +V P+ G G++ +
  MMETSP1061-20121228|22414_1 370 ATTFVKGRVALIGDSAHTVHPMAGQGLNLG 399
                  45668999******************9987 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.012       3.7       2      31 ..      36      66 ..      35      71 .. 0.83
   2 ?    1.4   0.0     0.069        22     129     164 ..     174     209 ..     158     218 .. 0.88
   3 !   30.7   0.0   8.6e-11   2.7e-08     294     358 ..     370     434 ..     353     443 .. 0.91

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.012
    TIGR03219  2 rvaiiGGGiaGvalalelsks.shlnvklfe 31
                  v+i+GGG+ G ++a  l+k+ + l v l +
  MMETSP1061-20121228|22414_1 36 DVTIVGGGVVGSSMANLLAKKlPNLRVALLD 66
                 699************9998753788888876 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.069
    TIGR03219 129 ieeqaeevevsfedGteyradlligadGiksalrdy 164
                  i + ++ v+v+ +d  e ++ ll+gadG +s +r++
  MMETSP1061-20121228|22414_1 174 IGDSNNLVTVKTKDKFELKTALLVGADGGNSWVRKT 209
                  556778899*********************999975 PP

  == domain 3    score: 30.7 bits;  conditional E-value: 8.6e-11
    TIGR03219 294 lpgyvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrrer 358
                    ++v+GrvaliGd+ah++ p  G G   Gl d  +l   ++++  +  d+++ l+ y+ +r++ 
  MMETSP1061-20121228|22414_1 370 ATTFVKGRVALIGDSAHTVHPMAGQGLNLGLGDVEFLVSCIKKAYDSGMDISSFLHEYNSIRHKD 434
                  5799**********************************************************865 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0     2e-09   6.3e-07     266     322 ..     363     419 ..     352     435 .. 0.87

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2e-09
    TIGR02360 266 aplrsfvaepmryGrlflaGdaahivpptGakGlnlaasdvaylyealleaykekds 322
                   pl  + a     Gr+ l Gd+ah v p   +Glnl   dv++l + +++ay+++ +
  MMETSP1061-20121228|22414_1 363 FPLSCYNATTFVKGRVALIGDSAHTVHPMAGQGLNLGLGDVEFLVSCIKKAYDSGMD 419
                  6899999999999***************************************99864 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00064       0.2       2      32 ..      36      68 ..      35      80 .. 0.86
   2 ?    2.2   0.0     0.049        15     136     164 ..     185     213 ..     164     229 .. 0.83
   3 !    7.3   0.0    0.0014      0.44     260     335 ..     372     449 ..     360     456 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00064
    TIGR02023  2 dvlviGggpsGaaaaetLaka..gievillere 32
                 dv ++Ggg+ G++ a+ Lak+  + +v+ll+ +
  MMETSP1061-20121228|22414_1 36 DVTIVGGGVVGSSMANLLAKKlpNLRVALLDSK 68
                 9******************97558899999876 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.049
    TIGR02023 136 geekksveadvviGaDGakskvakelglg 164
                  +++k  +++ + +GaDG +s v k+ g++
  MMETSP1061-20121228|22414_1 185 TKDKFELKTALLVGADGGNSWVRKTAGIP 213
                  5667778999**********998877765 PP

  == domain 3    score: 7.3 bits;  conditional E-value: 0.0014
    TIGR02023 260 rldservvLvGDaaGlvakasGeGiyyamksGklaaeaivealksg..datdLrkyekkfmklyktvfrvLrvlqkvy 335
                   + ++rv+L+GD+a  v + +G G+   +   ++    i +a +sg    + L++y+   +k+ +     ++ lq+++
  MMETSP1061-20121228|22414_1 372 TFVKGRVALIGDSAHTVHPMAGQGLNLGLGDVEFLVSCIKKAYDSGmdISSFLHEYNSIRHKDISVSLGGIHALQRLF 449
                  57789*******************988777777777777777776653344566666666666666666666666665 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.4   0.0     0.035        11       3      22 ..      37      56 ..      35      77 .. 0.82
   2 ?    0.3   0.0      0.16        49     143     167 ..     187     211 ..     171     227 .. 0.76
   3 !    7.4   0.0    0.0011      0.34     267     312 ..     373     418 ..     362     455 .. 0.70

  Alignments for each domain:
  == domain 1    score: 2.4 bits;  conditional E-value: 0.035
    TIGR02028  3 vavvgggpagasaaetlaka 22
                 v++vggg  g+s a+ lak 
  MMETSP1061-20121228|22414_1 37 VTIVGGGVVGSSMANLLAKK 56
                 89***************985 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.16
    TIGR02028 143 tkktlevdavigadgansrvakeid 167
                   k  l+   ++gadg ns v k  +
  MMETSP1061-20121228|22414_1 187 DKFELKTALLVGADGGNSWVRKTAG 211
                  44556667899*******9998754 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0011
    TIGR02028 267 rvvgrvalvgdaagyvtkssgegiyfaaksgrlcaeaiveesrlgk 312
                   v grval+gd+a +v   +g+g+ +      +   +i + +++g 
  MMETSP1061-20121228|22414_1 373 FVKGRVALIGDSAHTVHPMAGQGLNLGLGDVEFLVSCIKKAYDSGM 418
                  6889*******************98776666666666665555555 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   3.7e-05     0.012       4      37 ..      36      69 ..      34      71 .. 0.93

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 3.7e-05
    TIGR00562  4 kvvvvGgGisGLciayalekerpdvelvlvEakd 37
                 +v +vGgG+ G ++a  l+k+ p++ + l+++k+
  MMETSP1061-20121228|22414_1 36 DVTIVGGGVVGSSMANLLAKKLPNLRVALLDSKE 69
                 799************************9999886 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   4.9e-05     0.015       1      30 [.      37      68 ..      37      72 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.9e-05
    TIGR02352  1 vlviGgGviGlsvAveLakr..ghkvtllekd 30
                 v+++GgGv+G+s+A  Lak+  + +v+ll+++
  MMETSP1061-20121228|22414_1 37 VTIVGGGVVGSSMANLLAKKlpNLRVALLDSK 68
                 78***************998557888888876 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0021      0.65       1      33 [.      36      70 ..      36      76 .. 0.89
   2 ?   -3.5   0.0       2.9   9.3e+02     112     146 ..     176     210 ..     147     219 .. 0.76
   3 ?    2.9   0.0     0.034        11     259     287 ..     374     402 ..     355     440 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0021
    TIGR01790  1 DliviGgGlAglaiAlela..kpglrvqlieaapk 33
                 D+ ++GgG  g  +A  la   p+lrv l+++++k
  MMETSP1061-20121228|22414_1 36 DVTIVGGGVVGSSMANLLAkkLPNLRVALLDSKEK 70
                 99*****************7679*******98876 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.9
    TIGR01790 112 davslslvecaggqriqarlVidargfkalvqyek 146
                  d+++l +v++++  ++++ l + a g ++ v ++ 
  MMETSP1061-20121228|22414_1 176 DSNNLVTVKTKDKFELKTALLVGADGGNSWVRKTA 210
                  44778889999999999999999999998776655 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.034
    TIGR01790 259 leqkvvavGaaAglvHPatgYsvaralse 287
                   + +v+ +G  A  vHP++g  +   l +
  MMETSP1061-20121228|22414_1 374 VKGRVALIGDSAHTVHPMAGQGLNLGLGD 402
                  6789**************99777666655 PP

>> TIGR01320  mal_quin_oxido: malate dehydrogenase (acceptor)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.5   0.0     0.004       1.3       2      36 ..      36      70 ..      35      73 .. 0.92
   2 ?    3.3   0.0     0.018       5.7     192     254 ..     160     217 ..     145     224 .. 0.79

  Alignments for each domain:
  == domain 1    score: 5.5 bits;  conditional E-value: 0.004
    TIGR01320  2 dvvlvGaGimsatlgvllkelePsweitlierlea 36
                 dv +vG+G++ ++++ ll +  P++++ l++ +e+
  MMETSP1061-20121228|22414_1 36 DVTIVGGGVVGSSMANLLAKKLPNLRVALLDSKEK 70
                 999**************************998876 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.018
    TIGR01320 192 GtkirynrevkdlkresdgawvvtvkdtrtgekrklkarfvflGaGGgaldllqksGipevkG 254
                   tk  +n  + +++  +d++  vtvk   t +k +lk+  +++Ga Gg   + +++Gip+  G
  MMETSP1061-20121228|22414_1 160 STKLLFNTSLDSFNI-GDSNNLVTVK---TKDKFELKTA-LLVGADGGNSWVRKTAGIPRIGG 217
                  467788888888887.7888888775...7789999997.569******9********98765 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00014     0.046      21      53 ..      34      68 ..      14      71 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00014
    TIGR00292 21 esDviivGaGpsGLtaayylakeg..lkvvvlerk 53
                   Dv ivG+G  G + a  lak+   l+v++l++k
  MMETSP1061-20121228|22414_1 34 FFDVTIVGGGVVGSSMANLLAKKLpnLRVALLDSK 68
                 57********************9778*****9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (487 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 1947.84
//
Query:       MMETSP1061-20121228|22435_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1385.89
//
Query:       MMETSP1061-20121228|22451_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 430.40
//
Query:       MMETSP1061-20121228|22452_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 2140.11
//
Query:       MMETSP1061-20121228|22481_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1989.99
//
Query:       MMETSP1061-20121228|22488_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1457.16
//
Query:       MMETSP1061-20121228|22502_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 1116.83
//
Query:       MMETSP1061-20121228|22570_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 736.94
//
Query:       MMETSP1061-20121228|22589_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|22599_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 257.03
//
Query:       MMETSP1061-20121228|22609_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1957.84
//
Query:       MMETSP1061-20121228|22613_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.043    9.2  25.8      0.067    8.6  17.9    1.3  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        2.5    4.6   6.5        4.3    3.8   4.5    1.3  1  TIGR00939 2a57: nucleoside Transporter


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6  17.9   3.2e-05     0.067     921    1000 ..     220     298 ..     139     306 .. 0.59

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 3.2e-05
    TIGR00927  921 eedekdegeedeeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeee 1000
                     +e d+ +++ ee +       e+++++ n +++++ +  e+G d++ + + Gd ++e+++eee eee+ ee+e+eeee
  MMETSP1061-20121228|22613_1  220 TINELDQLNNELEELDCALVYSAEDENKNKNGNQNKNGRRLEEGEDEDREDEDGDGDDEDQDEEEREEEN-EEDEKEEEE 298 
                   3344444455555555555666677777788888888888888888888888888777766666533333.333333322 PP

>> TIGR00939  2a57: nucleoside Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   4.5    0.0021       4.3     208     269 ..     245     307 ..     224     313 .. 0.53

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0021
    TIGR00939 208 kldkeaqedetk.kelrskaeendepakgdkeskteelsaekepeskeeeevelktsvftvlk 269
                  ++++++++++ +   l + ++e++e + gd  ++ ++ + ++e+++++e+e e ++ +++vl+
  MMETSP1061-20121228|22613_1 245 ENKNKNGNQNKNgRRLEEGEDEDREDEDGDGDDEDQDEEEREEENEEDEKEEEENVVLWDVLA 307
                  222333444444044444444444444444444443333333333356666667788888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1591.20
//
Query:       MMETSP1061-20121228|22633_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-15   54.4   0.0    2.3e-15   54.3   0.0    1.0  1  TIGR01219 Pmev_kin_ERG8: phosphomevalonate kinase
    3.8e-05   20.7   0.0      4e-05   20.7   0.0    1.0  1  TIGR01220 Pmev_kin_Gr_pos: phosphomevalonate kinase


Domain annotation for each model (and alignments):
>> TIGR01219  Pmev_kin_ERG8: phosphomevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.3   0.0   1.1e-18   2.3e-15       3      64 ..       2      69 ..       1      71 [] 0.80

  Alignments for each domain:
  == domain 1    score: 54.3 bits;  conditional E-value: 1.1e-18
    TIGR01219  3 saPGkvLlaGGYlvLdkkyeglvlglsarlyavvkpldekvg.......adkfevrvkspqlkdaewlY 64
                 saPGkvLlaGGYlvL+ +++g+v++   r+y +v + + +          + + +rv+spq++ + w Y
  MMETSP1061-20121228|22633_1  2 SAPGKVLLAGGYLVLEAPNAGFVVAADKRFYTSVSAGNGNNDnngsdeaRQPMRIRVESPQFH-STWNY 69
                 9*******************************9987654433344555223359********9.77777 PP

>> TIGR01220  Pmev_kin_Gr_pos: phosphomevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   1.9e-08     4e-05       4      58 ..       2      55 ..       1      64 [. 0.83

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 1.9e-08
    TIGR01220  4 kaPGklfvaGeyavvePGnpailvavdrfvtvtveeadaaadviqskdlssepvt 58
                  aPGk+ +aG y v e  n   +va d+    +v++ +++ d   s d   +p++
  MMETSP1061-20121228|22633_1  2 SAPGKVLLAGGYLVLEAPNAGFVVAADKRFYTSVSAGNGNNDNNGS-DEARQPMR 55
                 69***************************99******998666444.44555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 468.56
//
Query:       MMETSP1061-20121228|22669_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.20
# Mc/sec: 1993.04
//
Query:       MMETSP1061-20121228|22670_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.0   0.0        1.2    6.0   0.0    2.2  2  TIGR00885 fucP: L-fucose:H+ symporter permease


Domain annotation for each model (and alignments):
>> TIGR00885  fucP: L-fucose:H+ symporter permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.0    0.0016       6.7     116     163 ..     442     489 ..     430     503 .. 0.79
   2 ?    6.0   0.0    0.0003       1.2     110     158 ..     592     640 ..     581     666 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0016
    TIGR00885 116 npyilalGdeetatrrlnlaqsfnplGsilgvvvasqlilanlesqkr 163
                   p il l  + +++ rlnl  s+++l  ++gv + sq +l  + +  +
  MMETSP1061-20121228|22670_1 442 VPPILLLLRDAASEVRLNLISSLESLNKVIGVDLLSQSLLPAILDLAQ 489
                  5778888889999*******************7766666555555455 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0003
    TIGR00885 110 fletaanpyilalGdeetatrrlnlaqsfnplGsilgvvvasqlilanl 158
                  + +t + p il + ++  a+ r+n+a+++  +G +    v +q i   l
  MMETSP1061-20121228|22670_1 592 IAQTEVLPIILEMATDTVANIRFNVARALGEMGPVCEPKVYNQQIHPIL 640
                  6678899**************************9988766666554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 2600.96
//
Query:       MMETSP1061-20121228|22685_1  [L=1530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    8.2   0.0       0.21    7.5   0.0    1.1  1  TIGR03549 TIGR03549: TIGR03549 family protein


Domain annotation for each model (and alignments):
>> TIGR03549  TIGR03549: TIGR03549 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0   5.1e-05      0.21      42     110 ..    1242    1308 ..    1237    1317 .. 0.86

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 5.1e-05
    TIGR03549   42 flassalcaayfvkvyckardiptenirlsqnnivdpedrynqifkiqvelpedisekdrkgilrsidr 110 
                   ++as ++c a+    y + r+   + +rls+  ivd +d  +  f+++  lp        k +lr++d 
  MMETSP1061-20121228|22685_1 1242 LIASGSMCGAHRTISYERRRN--GQPVRLSETHIVDSDDSDKLAFQVNERLPRRGFSIKVKILLRAVDN 1308
                   689********8888876665..789**************************98777777788898885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.61u 0.13s 00:00:00.74 Elapsed: 00:00:00.56
# Mc/sec: 3606.13
//
Query:       MMETSP1061-20121228|22698_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|22695_1  [L=282]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-60  200.8   2.5    9.5e-60  200.4   1.7    1.0  1  TIGR01127 ilvA_1Cterm: threonine dehydratase
    2.4e-47  159.5   0.8      3e-47  159.1   0.5    1.0  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    1.4e-37  127.2   4.0    1.8e-37  126.9   2.8    1.0  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    1.5e-35  120.6   0.3    1.9e-35  120.3   0.2    1.0  1  TIGR02079 THD1: threonine dehydratase
    6.6e-13   46.4   1.4    2.1e-12   44.7   1.0    1.7  1  TIGR01139 cysK: cysteine synthase A
    1.7e-12   45.2   0.8    4.6e-12   43.7   0.6    1.6  1  TIGR01136 cysKM: cysteine synthases
    3.3e-09   33.8   0.1    4.5e-09   33.4   0.0    1.2  1  TIGR01747 diampropi_NH3ly: diaminopropionate ammonia-lyase family
    7.2e-09   33.1   0.1    1.1e-08   32.4   0.0    1.3  1  TIGR00260 thrC: threonine synthase
    3.8e-08   30.1   0.0    5.6e-08   29.6   0.0    1.2  1  TIGR03528 2_3_DAP_am_ly: diaminopropionate ammonia-lyase
    2.5e-07   27.6   0.8    8.3e-07   25.8   0.6    1.8  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    1.7e-06   25.1   0.3    4.4e-05   20.5   0.1    2.3  3  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    9.6e-06   23.1   0.3      2e-05   22.1   0.2    1.5  1  TIGR01138 cysM: cysteine synthase B
    2.6e-05   21.0   0.0    7.9e-05   19.4   0.0    1.6  1  TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.4   1.7     3e-62   9.5e-60      43     291 ..       7     273 ..       3     279 .. 0.88

  Alignments for each domain:
  == domain 1    score: 200.4 bits;  conditional E-value: 3e-62
    TIGR01127  43 seeekkrG..vvaasaGnhaqGvalaakvfgikakivmPesaplskvkatksyGaeviLhGadfDeayklaeelaeeegrvfvhafdDefviaGqGtlglei......ledlpdvdtvivPvGGGGLisGvasavkkln.pevkviGveaeaapslveslkegkikav...esvktiaDGiavkkpgdltfeivkelvDevvavdeeeiakaillLlerakivaegaGavgvaavleekvdvkg.......kkvavvvsGGnidlnll 291
                  se+e++ G  vv+ s+Gnhaq  alaak+ +++a+ivmP+ apl k +a++ +Ga ++   ++ +     ae++ +e+g+vfvh+ +D+ viaGqGt++le       ++d  d+d vi+PvGGGGL +G  +a++ l+ p vk++  e e+ +  ++s++eg+  ++   ++ +++aDG+ + + g+ t++iv++lvD+v++v+e ei +a  ++ er k+ +e++  vgva   ++ +++k        ++v++v++GGn+d+  +
  MMETSP1061-20121228|22695_1   7 SENENETGlsVVTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTVENSNEARKSEAERIVAETGAVFVHPSEDPLVIAGQGTVALEFigqvreMADGRDLDAVIIPVGGGGLAAGNCIALRALLdPSVKIVLAEPETLNDAQRSFREGRLLHHppgTVLDSVADGLKT-TLGPNTWPIVRDLVDDVITVSETEILRATKMVWERLKVAIEPSAGVGVAVASSREFHAKYpreesgvRNVGIVLCGGNVDIGKI 273
                  55566655449********************************************999877776666778*******************************7444444678899**********************975389**********************99884446789******97.589*********************************************999888877553222233478***********8765 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.1   0.5   9.6e-50     3e-47      62     309 ..      11     271 ..       4     278 .. 0.85

  Alignments for each domain:
  == domain 1    score: 159.1 bits;  conditional E-value: 9.6e-50
    TIGR01124  62 eqkakGviaasaGnhaqGvalsakklGvkavivmpettpeikvdavkafGgevvlhGenydeakakalelaqekgltfiapfddplviaGqGtvalellrqvee.....dldavfvpvGGGGliaGvaalvkql.lpeikvigveaedsaalkqaleaGervkldqvGlfadGva...vkevGdetfrlckeylddivlvdtdevcaaikdvfedtravlepaGa..lalaGlkkyvakkgied...ktlvailsGanlnfd 309
                  ++    v++ s+Gnhaq +al+ak   v+a+ivmp+t+p +k +av+ fG+ +v   ++ +  k++a ++  e g  f++p +dplviaGqGtvale++ qv+e     dldav +pvGGGGl+aG  + +++l  p +k++  e+e  +  ++++  G+  +    G   d va     ++G +t+ ++++++dd+++v   e+  a k v+e  +  +ep+    +a+a  +++ ak   e+   +++  +l+G n++  
  MMETSP1061-20121228|22695_1  11 NETGLSVVTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTVENSNEARKSEAERIVAETGAVFVHPSEDPLVIAGQGTVALEFIGQVREmadgrDLDAVIIPVGGGGLAAGNCIALRALlDPSVKIVLAEPETLNDAQRSFREGRLLHHPP-GTVLDSVAdglKTTLGPNTWPIVRDLVDDVITVSETEILRATKMVWERLKVAIEPSAGvgVAVASSREFHAKYPREEsgvRNVGIVLCGGNVDIG 271
                  4555679***********************************************99999999999**********************************9987533344899*****************9998626************************998764.555555553313579****************************************9761256778888877644443112566778899998765 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  126.9   2.8   5.6e-40   1.8e-37      62     286 ..       9     240 ..       2     273 .. 0.85

  Alignments for each domain:
  == domain 1    score: 126.9 bits;  conditional E-value: 5.6e-40
    TIGR02991  62 sdaeraaGvvaastGnhGralayaakkegvravicmselvpqnkvdeirrlGaevrivGrsqddaqeeverlvkerGlvmlppfdhadivaGqGtlglevveqvp......dlalvlvplsGGGlasGvavavkal.kpatrviGvsmerGaamkaslkaGrpvlveelptladslGGGiGld.nrvtfalckelldeivllsedeiaagirhayaeereiveGaGavGiaal 286
                  +++e    vv+ s+Gnh +ala aak + vra+i m +  p  k +++r +Ga +  v +s++  + e er+v+e G v + p +++ ++aGqGt++le + qv       dl+ v++p+ GGGla+G ++a++al  p+++++    e     + s++ Gr  +     t+ ds+  G+       t+ ++++l+d+++ +se ei  + +  + + +  +e +  vG+a  
  MMETSP1061-20121228|22695_1   9 NENETGLSVVTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTVENSNEARKSEAERIVAETGAVFVHPSEDPLVIAGQGTVALEFIGQVRemadgrDLDAVIIPVGGGGLAAGNCIALRALlDPSVKIVLAEPETLNDAQRSFREGRLLHH-PPGTVLDSVADGLKTTlGPNTWPIVRDLVDDVITVSETEILRATKMVWERLKVAIEPSAGVGVAVA 240
                  556677889*******************************************************************************************998862222225779*******************9648******999999999********97654.445666666666544313579*****************************************9975 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  120.3   0.2     6e-38   1.9e-35      62     311 ..      12     272 ..       4     279 .. 0.84

  Alignments for each domain:
  == domain 1    score: 120.3 bits;  conditional E-value: 6e-38
    TIGR02079  62 elekgvvcasaGnhaqGvayacrklgvkgtvfmPvttPkqkvdkvklfGgefievilvGdtfdeaaaaakkavekegktlipPfddkdiieGqgtvaveileqleee....kidlvlvpvGGGGlisGvtsylkek.skktkiigvePeGapslkaslkagevvtl...dkidkfvdGaavkrvGdlnfkalkkvvdevtlveegavcstildlynkegivaePaGalsia..aleels.....eeikgktvvcvvsGgnndier 311
                  e   +vv  s+Gnhaq +a a +  +v++t+ mP t+P  k + v+ fG   + v    +  ++ +++a++ v+++g+ +++P +d+ +i+Gqgtva+e + q++e     + d v++pvGGGGl++G +  l++   +  ki+  ePe     + s+++g+ +       +d   dG     +G  ++ +++++vd+v++v+e ++  +   ++++  + +eP+  + +a  +  e++     ee   ++v  v+ Ggn di +
  MMETSP1061-20121228|22695_1  12 ETGLSVVTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTV---ENSNEARKSEAERIVAETGAVFVHPSEDPLVIAGQGTVALEFIGQVREMadgrDLDAVIIPVGGGGLAAGNCIALRALlDPSVKIVLAEPETLNDAQRSFREGRLLHHppgTVLDSVADGLK-TTLGPNTWPIVRDLVDDVITVSETEILRATKMVWERLKVAIEPSAGVGVAvaSSREFHakyprEESGVRNVGIVLCGGNVDIGK 272
                  4445699******************************************986655...567788899**********************************9988765557799**************9988877527899*********************998633256899999976.579***************************99***********87766651144443321122444457888899******976 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   1.0   6.6e-15   2.1e-12      49     269 ..       6     241 ..       2     256 .. 0.78

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 6.6e-15
    TIGR01139  49 ekegllkkgktiveatsGntGialamvaaargykliltmpetmslerrkllkayGaelvLtdgaegmkgaiekaeelveetpnkylllkqfenpanpeihrkttapeilkdldgk.....ldafvagvGtGGtitGvgevlkekkp.dikvvavePaespvlsgg...............kpgphkiqGigagfiPkv..LdkevidevikvsdeeaietarrlakeeGilvGissGaavaaal 269
                  e e+  + g  +v   sGn   ala+ a     +++++mp+t  l +++ ++ +Ga +v  + ++   +  ++ae +v+et+  +  ++  e+p    + + t a e + ++ +      lda++  vG GG  +G   +l+   + ++k+v +eP++ +  +++               +       G+ +   P+   + ++++d+vi+vs+ e ++ ++ + ++  + +  s+G  va a 
  MMETSP1061-20121228|22695_1   6 ESENENETGLSVVTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTVENSNE--ARKSEAERIVAETGAVF--VHPSEDPL-VIAGQGTVALEFIGQVREMadgrdLDAVIIPVGGGGLAAGNCIALRALLDpSVKIVLAEPETLNDAQRSfregrllhhppgtvlD---SVADGLKTTLGPNTwpIVRDLVDDVITVSETEILRATKMVWERLKVAIEPSAGVGVAVAS 241
                  56666678889**********************************************998876655..55679*********655..66666666.456789999998766543222348**********************98665*********9877666666666777665553331...233454444555542245789****************99999999999999998888775 PP

>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.7   0.6   1.5e-14   4.6e-12      49     269 ..       6     241 ..       3     259 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.7 bits;  conditional E-value: 1.5e-14
    TIGR01136  49 ekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrkllkayGaelvlteaeegmkgaiekakelaeeepekyvllkqfeNpaNpeaHrkttgpEilkdtdgk.....idafvagvGtgGtitGvgrvlkekkp.nvkivavePaespvlseg............kpgphkiqgigagfiPkild..eelldevikvededaietarrlakeegilvGiSsGaavaaal 269
                  e++++ + g  ++   SGN   aLA++a +  ++ ++vmp+t+ l ++++++ +Ga +v +e++   ++  ++a+ +++e++    +++  e p  + a + t + E + ++ +      +da++  vG gG   G   +l+   + +vkiv +eP++ +  +++               +    g+++   P+ +   ++l+d+vi+v++++ ++ ++ + ++  + +  S+G  va a 
  MMETSP1061-20121228|22695_1   6 ESENENETGLSVVTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTVENS--NEARKSEAERIVAETGAV--FVHPSEDPL-VIAGQGTVALEFIGQVREMadgrdLDAVIIPVGGGGLAAGNCIALRALLDpSVKIVLAEPETLNDAQRSfregrllhhppgTVLDSVADGLKTTLGPNTWPivRDLVDDVITVSETEILRATKMVWERLKVAIEPSAGVGVAVAS 241
                  566666778899*********************************************9987665..5667789*******8844..455555555.456788999999877654333347**********************97654*********9887766556667777665542222334455555566654322789999999999999999999999999999999988777664 PP

>> TIGR01747  diampropi_NH3ly: diaminopropionate ammonia-lyase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.4e-11   4.5e-09      95     293 ..      15     205 ..       2     236 .. 0.71

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1.4e-11
    TIGR01747  95 atfvtatdGnhGrGvawaaeklGqkavvympkGsaqeraeniekeGaevtitdlnyddavrlankmaqekgwvlvqdtaweGyekiptwimqGyatlaveaveqlrelgselp.thvllqaGvGslaGavlGylveafsenipniivveadkadclyqsavkddGe.irlvdG.dlatimaGlacG.epniisfeilrnntsl 293
                     vt + Gnh + +a aa+    +a ++mp  + +++++++++ Ga+++  +   +     a++   e+g v+v  +      + p  ++ G +t+a+e + q+re++  +    v++  G G la +    l  a+ + +++i++ e++  +   +s     G  ++   G  l ++  Gl     pn  +++i+r+    
  MMETSP1061-20121228|22695_1  15 LSVVTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTVENSNEARKSEAERIVAETGAVFVHPS------EDP-LVIAGQGTVALEFIGQVREMADGRDlDAVIIPVGGGGLAAGNCIALR-ALLDPSVKIVLAEPETLNDAQRSFRE--GRlLHHPPGtVLDSVADGLKTTlGPN--TWPIVRDLVDD 205
                  4678999****************************************9765554444445568888888888888754......445.5779****************977652678999999998866554444.45556678888999888777666433..33123333303444444554321344..36777766554 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   0.0   3.6e-11   1.1e-08      74     307 ..      12     240 ..       2     257 .. 0.76

  Alignments for each domain:
  == domain 1    score: 32.4 bits;  conditional E-value: 3.6e-11
    TIGR00260  74 e...tvlcAtsGdtgaaaaealagkanvkvvvLyPkgkispvkeklvtalaenakvlaikGdFDdaqdlvkeifedkeklklnsvNsinparieaqktyafeiveqlgk....espdkvvvpvpsgnfga.ilkGflekkelglpieklaiaaegaadivrrflksgdlepkedkeTlstAmdi.gnpsnveralelarrslgnledlkesvsdeeileaikklaeeegyllephtavavaal 307
                  e    v++ +sG+ + a+a   a +a v++ +++P+   +p+ +k   + + +a+++ ++    + +   + i+ +  ++ +    s  p  i++q t+a e++ q+ +    ++ d v++pv++g + a    +      l   ++   +++e  +d  r f++++  + ++ + T+  +++  ++    +  + ++r    ++  +    s+ eil+a+k + e+ ++ +ep ++v+va+ 
  MMETSP1061-20121228|22695_1  12 EtglSVVTHSSGNHAQALA-LAAKMAAVRATIVMPNT--APLVKK-NAVRDFGATIVTVENSNEARKSEAERIVAETGAVFVHP--SEDPLVIAGQGTVALEFIGQVREmadgRDLDAVIIPVGGGGLAAgNCIA--LRALLDPSVKIVLAEPETLNDAQRSFREGR--LLHHPPGTVLDSVADgLKTTLGPNTWPIVRDLVDDVITV----SETEILRATKMVWERLKVAIEPSAGVGVAVA 240
                  3555799************.78889**********98..888555.4567889******9988888888888886666655555..559***************999987777999********77664302223..2333334688889999999********999..445555666666543044444555555776666666666....*************************999875 PP

>> TIGR03528  2_3_DAP_am_ly: diaminopropionate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0   1.8e-10   5.6e-08     114     316 ..      15     209 ..       2     226 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1.8e-10
    TIGR03528 114 itfvtatdGnhGrGvawaanklgqksvvymPkGsaqerlenirkeGaeatitdlnydda.vrlaakkaeekGwvvvqdtaweGyeeiPtwimqGyttlalealeqlkelgvek.pthvllqaGvGslagavlGylaskfgeerpiivivepdkadclyrsavaddGeihlvtGdlatimaGlacGepntigweilrdyasafvsc 316
                  +  vt + Gnh + +a aa+    ++ + mP  +  ++++++r+ Ga+++ ++ n ++a    a++   e+G v v  +      e P  ++ G +t+ale + q++e++  +    v++  G G la++    l  ++ + + +iv+ ep++ +   rs  +     h  +  l ++  Gl        +w+i+rd  +  +++
  MMETSP1061-20121228|22695_1  15 LSVVTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTVE-NSNEArKSEAERIVAETGAVFVHPS------EDP-LVIAGQGTVALEFIGQVREMADGRdLDAVIIPVGGGGLAAGNCIAL-RALLDPSVKIVLAEPETLNDAQRSFREGRLLHHPPGTVLDSVADGLKTTL-GPNTWPIVRDLVDDVITV 209
                  5789999****************************************876555.4455504457777788888877653......445.5678**************9876541678999*****9998866555.45556678889999998887776655433333333333444445554332.222478888777766654 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.6   2.6e-09   8.3e-07      54     280 ..       6     240 ..       2     255 .. 0.69

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2.6e-09
    TIGR01137  54 eksGrlkpgdtliePtsGntGiGlalvaaikGykciivlPekvseekvdvlkalGaeivrtPtaaafdsPesyigvakrlekeipgavildqyanasnPlahydttgeeileqleg.....kldalvagvGtGGtitGiarklk.ekedkvrivGadPeGsilae.....peelnktekt..dykveGiGydfiPtvl..drkvvdeiiktddkesfkmarrlikeegllvgGssGsavvaa 280
                  e + + + g  ++   sGn    lal+a++   ++ iv+P+     k + ++ +Ga iv +    +     +  + a+r++ e+     +   +++    a   t + e + q+ +     +lda++  vG GG  +G +  l+   +++v+iv a+Pe    a+     +  l +   t  d   +G+   + P+ +   r++vd++i +++ e ++ ++++ +   + +  s+G  v++a
  MMETSP1061-20121228|22695_1   6 ESENENETGLSVVTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTVENSNE-----ARKSEAERIVAETGAV-FVHPSEDPL-VIAGQGTVALEFIGQVREmadgrDLDAVIIPVGGGGLAAGNCIALRaLLDPSVKIVLAEPETLNDAQrsfreGRLLHHPPGTvlDSVADGLKTTLGPNTWpiVRDLVDDVITVSETEILRATKMVWERLKVAIEPSAGVGVAVA 240
                  555556677889999*******************************************98765554.....4455567777776443.333333322.234455556666665554455578**********************66789*****9999864433311110333333222211233445444444443211377888888888888888888888888888888888877665 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   1.4e-07   4.4e-05      56     123 ..      12      79 ..       3      93 .. 0.85
   2 ?   -3.1   0.0       2.2   6.9e+02     166     197 ..     120     152 ..     107     153 .. 0.75
   3 ?    2.2   0.0     0.053        17     230     268 ..     200     238 ..     185     263 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 1.4e-07
    TIGR03945  56 kpgttiiESsSGnlaiaLamvcaalGlkficvvDpkiseanlkllralgaevevveekdetggyLkaR 123
                  + g  ++  sSGn a aLa  +++  ++ ++v+ + +  ++++ +r +ga++++ve+++e+ +   +R
  MMETSP1061-20121228|22695_1  12 ETGLSVVTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTVENSNEARKSEAER 79 
                  55668999**********************9998777888999**************99876655555 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 2.2
    TIGR03945 166 evdylfvgvsttGtlaGvarrlrek.spevkvv 197
                  ++d ++++v+ +G  aG   +lr    p+vk+v
  MMETSP1061-20121228|22695_1 120 DLDAVIIPVGGGGLAAGNCIALRALlDPSVKIV 152
                  689999999999999998877776425667765 PP

  == domain 3    score: 2.2 bits;  conditional E-value: 0.053
    TIGR03945 230 eslidevvkvseletvaacrelleregilaGgSsGtvva 268
                  ++l+d+v++vse+e ++a++ + er  + +  S+G  va
  MMETSP1061-20121228|22695_1 200 RDLVDDVITVSETEILRATKMVWERLKVAIEPSAGVGVA 238
                  6899****************9999988777777764332 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.2   6.4e-08     2e-05      57     115 ..      12      70 ..       4      86 .. 0.86

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 6.4e-08
    TIGR01138  57 keGdvlieatsGntGialamvaalkGykvkllmpdnvseerkaalkayGaelilvdkee 115
                    G  ++  +sGn   ala++a +  ++ +++mp+     +k+a++ +Ga ++ v++ +
  MMETSP1061-20121228|22695_1  12 ETGLSVVTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTVENSN 70 
                  567789999******************************************99887654 PP

>> TIGR02035  D_Ser_am_lyase: D-serine ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.5e-07   7.9e-05     156     384 ..      18     238 ..      11     257 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.5e-07
    TIGR02035 156 avGstGnlGlsiGiisaalGfkvtvhmsadakkwkkdklrskGvtvveyesdyskaveeGrkeaeadplsyfvddeksrdlflGyavaasrlkkqldkkgikvdkehplfvylpcGvGGgpGGvafGlkllfgddvhvffaepthspcmllGlytGlhekisvqdiGidnltaadGlavgrpsGlvGrllerlldGiytvddeklydllallaesedkrlepsalagla 384
                     s+Gn   ++ + +     ++t+ m   a   kk+ +r+ G t+v  e+       e  +   a+  + fv   +   +  G    a  + +q+ +++   d +    v +p G GG   G    l+ l + +v +++aep         ++ G   ++  +  G    + adGl  +        +++ l+d + tv+++++ +  +++ e  ++ +epsa  g+a
  MMETSP1061-20121228|22695_1  18 VTHSSGNHAQALALAAKMAAVRATIVMPNTAPLVKKNAVRDFGATIVTVENSNEARKSEAERIV-AETGAVFVHPSEDPLVIAGQGTVALEFIGQVREMADGRDLDA---VIIPVGGGGLAAGNCIALRALLDPSVKIVLAEPETLNDAQRSFREG---RLLHHPPGTVLDSVADGLKTTLGPN-TWPIVRDLVDDVITVSETEILRATKMVWERLKVAIEPSAGVGVA 238
                  567899999999999999999**************************99987655555555444.445567888877788888988888888899999888888875...889******************************8766555555554...5556667777778999998775443.456889999999**************9999999****9987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (282 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.29u 0.11s 00:00:00.40 Elapsed: 00:00:00.38
# Mc/sec: 979.50
//
Query:       MMETSP1061-20121228|22707_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 499.67
//
Query:       MMETSP1061-20121228|22702_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1868.15
//
Query:       MMETSP1061-20121228|22724_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-51  171.9   0.1    3.8e-51  171.6   0.0    1.0  1  TIGR00338 serB: phosphoserine phosphatase SerB
      2e-29  100.6   0.0    2.7e-29  100.2   0.0    1.2  1  TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
    5.5e-20   70.1   0.0    8.1e-20   69.5   0.0    1.2  1  TIGR01489 DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
      8e-07   27.1   0.0      1e-06   26.7   0.0    1.2  1  TIGR03333 salvage_mtnX: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
    1.1e-06   26.9   0.0    0.00015   19.9   0.0    2.2  1  TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB
    3.4e-05   21.8   0.2      0.056   11.3   0.0    2.5  3  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
     0.0011   16.6   0.0     0.0017   16.0   0.0    1.3  1  TIGR01491 HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
  ------ inclusion threshold ------
      0.012   12.4   0.1        1.6    5.3   0.0    2.1  2  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
      0.016   13.1   0.1       0.14   10.1   0.0    2.3  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
       0.02   12.3   0.1       0.15    9.4   0.0    2.2  2  TIGR01482 SPP-subfamily: sucrose-phosphate phosphatase subfamily
      0.022   12.4   1.3       0.35    8.5   0.0    2.5  3  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal
      0.042   11.3   0.1       0.38    8.1   0.0    2.3  3  TIGR00099 Cof-subfamily: Cof-like hydrolase
       0.05   10.5   0.0      0.064   10.2   0.0    1.2  1  TIGR03972 rSAM_TYW1: wyosine biosynthesis protein TYW1


Domain annotation for each model (and alignments):
>> TIGR00338  serB: phosphoserine phosphatase SerB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   0.0   1.2e-53   3.8e-51       8     216 ..      36     253 ..      31     255 .. 0.91

  Alignments for each domain:
  == domain 1    score: 171.6 bits;  conditional E-value: 1.2e-53
    TIGR00338   8 skllkkkklvvfDlDstlieeEvIdeiaklaGveeeVseiTerAmrgeldFkeslreRvkllkglpvellkkve.eklelteGveelvkkLkekgykvaviSGgFdlvaeklkekLglda..vfaNrLeve...dgkltGkvegeivdesakaktllkllekegislektvavGDGanDlsmikaAglgiafna...kpvlkekadiviek.kdltdil 216
                   + l+++++v+fD+Dst+i+eE Id +a   G +eeV+++T  Am+g ++F+++l+ R+ ll +++ ++l+  e ++lelt+G++ lv++L+ k++ v+++SGgF++++e l+e L+++   ++aN++++e   +gk++G++  e+++++  +k +   + ke++s e++v+vGDGa+D ++ ++A+++++f +   +p++k++ad  +++ +d+t+++
  MMETSP1061-20121228|22724_1  36 MHALYEADAVCFDVDSTVINEEGIDVLADFLGKGEEVAKLTAAAMEGGMKFEDALKARLDLLEPSRKQILDCLEaHPLELTPGLQTLVETLHSKNVDVFLVSGGFRIMIEPLAEILKIPIanIVANTINFEygsEGKYAGFDPNEPTSQD-MGKPKALEQLKEKFSYENMVMVGDGATDAQAKPPAKAFVGFGGvveRPAVKDQADWFVKDfADMTKVV 253
                  567899**************************************************************9999862679****************************************997789*****988889************999.5666666677999****************************98555799******9997537888876 PP

>> TIGR01488  HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.2   0.0   8.4e-32   2.7e-29       1     172 [.      44     215 ..      44     220 .. 0.88

  Alignments for each domain:
  == domain 1    score: 100.2 bits;  conditional E-value: 8.4e-32
    TIGR01488   1 laifDfDgTLtdqdsliellkkllgtndevkeltrlvlegrisfedrlgrrlkllerslleelakefla.kevairpgarelikwlkekGiklvivSggldflveklaeklgidk..vfaneleld..dnGlltgriegevnpsgeeKgkvlkelleeskedrkeiiavGDsvnDlp 172
                  +++fD+D+T+++++  i++l+ +lg+ +ev +lt+ ++eg ++fed+l+ rl+lle s+ +++ + +l+   + ++pg+++l+++l +k++++++vSgg+++ +e+lae+l+i    ++an + ++    G++ g    e++   + K k+l++l+e+ ++  +++++vGD+++D  
  MMETSP1061-20121228|22724_1  44 AVCFDVDSTVINEEG-IDVLADFLGKGEEVAKLTAAAMEGGMKFEDALKARLDLLEPSR-KQILD-CLEaHPLELTPGLQTLVETLHSKNVDVFLVSGGFRIMIEPLAEILKIPIanIVANTINFEygSEGKYAGFDPNEPTSQDMGKPKALEQLKEKFSY--ENMVMVGDGATDAQ 215
                  69*************.99999999999*******************************8.88887.6651556778************************************998889999888831134577776655699999*********9999999..68**********76 PP

>> TIGR01489  DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.5   0.0   2.6e-22   8.1e-20       4     177 ..      45     216 ..      43     221 .. 0.92

  Alignments for each domain:
  == domain 1    score: 69.5 bits;  conditional E-value: 2.6e-22
    TIGR01489   4 vvsDFDgTIieqdsddwivdkfgkkeakrllkeslskdlsiefmdrlmkvLsseglkedeikevlks..vpidegvkefiefikekeidliviSdgnefFidavleaigvkdvfveiysNkasfdsdgrltvvnhkahgcssspkglcKgkvieklsek.kkekivyiGDgvsDvcp 177
                  v +D D T+i+++ +d + d +gk+e  ++l      ++ ++f d+l   L+    + ++i+++l+   +++++g++ ++e++++k++d+  +S+g  + i+++ e   +     +i++N ++f+         +++++ +s+   + K+k +e+l+ek  +e +v++GDg +D ++
  MMETSP1061-20121228|22724_1  45 VCFDVDSTVINEEGIDVLADFLGKGEEVAKLTAAAM-EGGMKFEDALKARLDLLEPSRKQILDCLEAhpLELTPGLQTLVETLHSKNVDVFLVSGGFRIMIEPLAEILKIPI--ANIVANTINFEYGSEGKYAGFDPNEPTSQD--MGKPKALEQLKEKfSYENMVMVGDGATDAQA 216
                  789*********************999988888877.5899*************************978999********************************99777766..89********98888888888888888765..669*************************876 PP

>> TIGR03333  salvage_mtnX: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.0   3.3e-09     1e-06       4     172 ..      47     217 ..      44     253 .. 0.80

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 3.3e-09
    TIGR03333   4 cdfdgtitendniisimkkfa..ppewealkddvlskelsikegvgrlfsllpsslkeeiidfl.lktaeiregfrefvafvnekeiplyvvsggldffvypllegl.vekeriycneadfsneyieiewphacdgecqndcglckpslirklsetddy..vvvigdsvtdleaa 172
                   d d t+ ++ + i ++ +f    +e+ +l    +   +  ++ +   ++ll  s k+ i+d l  +  e+ +g++ +v+ ++ k++ +++vsgg+ +++ pl e l ++  +i  n  +f+         +  +   ++d g  kp  +++l+e+  y  +v++gd  td +a 
  MMETSP1061-20121228|22724_1  47 FDVDSTVINE-EGIDVLADFLgkGEEVAKLTAAAMEGGMKFEDALKARLDLLEPSRKQ-ILDCLeAHPLELTPGLQTLVETLHSKNVDVFLVSGGFRIMIEPLAEILkIPIANIVANTINFEYGSEGKYAGFDPNEPTSQDMG--KPKALEQLKEKFSYenMVMVGDGATDAQAK 217
                  5888888755.55677888852246888888999999999999999999999988765.66666156689***********************************9878999*********9776665556666666666665..8889999999987744799*******9985 PP

>> TIGR01490  HAD-SF-IB-hyp1: HAD hydrolase, family IB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.7e-07   0.00015      88     184 ..     115     214 ..      44     230 .. 0.69

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 4.7e-07
    TIGR01490  88 lypeardlikahkaeGhkvvlvSasleilvkplArklgi..dnligt..rleeaedGiltG.elegenlkgeeKvkalaellaeekidlkesyaYsDsisDl 184
                  l p    l++ + ++  +v+lvS+++ i+++plA++l i   n++++  ++e   +G++ G     + ++  +K kal++l   ek+++++  + +D  +D 
  MMETSP1061-20121228|22724_1 115 LTPGLQTLVETLHSKNVDVFLVSGGFRIMIEPLAEILKIpiANIVANtiNFEYGSEGKYAGfDPNEPTSQDMGKPKALEQLK--EKFSYENMVMVGDGATDA 214
                  66777889999999999******************998633677775226777899****9334456677789*******95..567778999999999995 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0       3.7   1.2e+03       2      14 ..      45      57 ..      44      77 .. 0.75
   2 !    8.0   0.0    0.0019      0.59      13      77 ..     111     174 ..     107     181 .. 0.87
   3 !   11.3   0.0   0.00018     0.056     175     209 ..     182     214 ..     177     216 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 3.7
    TIGR01484  2 lffDlDgTLldpk 14
                 + fD+D T  +++
  MMETSP1061-20121228|22724_1 45 VCFDVDSTVINEE 57
                 6799999987766 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0019
    TIGR01484  13 pklelseelieaLerlrealgvkvvivTGRslaeikellkqlnlelpliaengalieaqgeklya 77 
                  ++lel++ l + +e l+ + +v+v++v+G     i++l+++l  ++  i  n   +e+ +e++ya
  MMETSP1061-20121228|22724_1 111 HPLELTPGLQTLVETLHSK-NVDVFLVSGGFRIMIEPLAEILKIPIANIVANTINFEYGSEGKYA 174
                  44899999***********.6********99999******9999988888889999999999888 PP

  == domain 3    score: 11.3 bits;  conditional E-value: 0.00018
    TIGR01484 175 lpagvdKgkalqalleelnlkkeeilafGDsgNDe 209
                  + ++ +K kal++l e++    e+ + +GD+++D+
  MMETSP1061-20121228|22724_1 182 TSQDMGKPKALEQLKEKFS--YENMVMVGDGATDA 214
                  557899***********99..9************8 PP

>> TIGR01491  HAD-SF-IB-PSPlk: phosphoserine phosphatase-like hydrolase, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   5.2e-06    0.0017       9     179 ..      47     217 ..      42     232 .. 0.66

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 5.2e-06
    TIGR01491   9 fDldGtLteekssWeyvhrrleteeeakknaelfesGsisYeewlrlDvelWlrasgrlkreevaeilke..iklrdeaeevvrlLkekGlktavvsgGislLvkkvaeklqa..DyvlsnelvfdekGfvqpdgi..vrvivdk..kgiavkrlkseLnaskeetvavGDskedasif 179
                  fD+d t++ ++   + +   l+  ee  k +    +G +++e+ l+    l         r+++ + l+   ++l  + + +v++L+ k + + +vsgG  ++++ +ae l++     ++n + f+ + + +  g+     + +   k +a+++lk++     e++v+vGD   da++ 
  MMETSP1061-20121228|22724_1  47 FDVDSTVI-NEEGIDVLADFLGKGEEVAKLTAAAMEGGMKFEDALKARLDLLEPS-----RKQILDCLEAhpLELTPGLQTLVETLHSKNVDVFLVSGGFRIMIEPLAEILKIpiANIVANTINFEYGSEGKYAGFdpNEPTSQDmgKPKALEQLKEKFSY--ENMVMVGDGATDAQAK 217
                  55555555.3344555555555555555555555555556666555554444443.....4555555543115566777899***************************7765116789******976554444431133333321266799999998876..********99999875 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.0    0.0051       1.6     338     409 ..      83     154 ..      36     162 .. 0.74
   2 ?    5.2   0.0    0.0054       1.7     420     444 ..     193     217 ..     184     231 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0051
    TIGR01511 338 alktdekeekgttsvlvakkgelaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgie 409
                  ++k++++ +++   +  ++k+ l ++ a   el p  ++++e+L+++++ v+l++G  +  ++ +A+ l i 
  MMETSP1061-20121228|22724_1  83 GMKFEDALKARLDLLEPSRKQILDCLEAHPLELTPGLQTLVETLHSKNVDVFLVSGGFRIMIEPLAEILKIP 154
                  455544444444444445566666777777899999***********************9999999999884 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0054
    TIGR01511 420 aakvkelqekkvamvGDGiNDapaL 444
                  +++ ++   ++++mvGDG  Da a 
  MMETSP1061-20121228|22724_1 193 EQLKEKFSYENMVMVGDGATDAQAK 217
                  455566777899**********874 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.43   1.4e+02       2      14 ..      44      56 ..      43      81 .. 0.75
   2 ?   10.1   0.0   0.00044      0.14      88     128 ..     183     217 ..     109     226 .. 0.69

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.43
    TIGR01662  2 lvvlDlDgtLidd 14
                 +v +D+D t i++
  MMETSP1061-20121228|22724_1 44 AVCFDVDSTVINE 56
                 689******9943 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00044
    TIGR01662  88 kceyrKpktgmleealkrlneidakesvvvGDavltDleaa 128
                   +++ Kp  ++le++++++   + +++v+vGD   tD +a 
  MMETSP1061-20121228|22724_1 183 SQDMGKP--KALEQLKEKF---SYENMVMVGD-GATDAQAK 217
                  5677788..9999999999...8*********.77999875 PP

>> TIGR01482  SPP-subfamily: sucrose-phosphate phosphatase subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.43   1.4e+02      31      62 ..     130     161 ..     118     180 .. 0.58
   2 ?    9.4   0.0   0.00047      0.15     146     179 ..     184     215 ..     174     217 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.43
    TIGR01482  31 yillvlvtGrsvkfakelakligtpdivilen 62 
                   + + lv+G    +++ la  +++p + i++n
  MMETSP1061-20121228|22724_1 130 NVDVFLVSGGFRIMIEPLAEILKIPIANIVAN 161
                  34455555655555555555555555555554 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00047
    TIGR01482 146 kgvdKGkavkylkeklgikpeeilviGDSeNDid 179
                  ++++K ka++ lkek + +  +++++GD+  D++
  MMETSP1061-20121228|22724_1 184 QDMGKPKALEQLKEKFSYE--NMVMVGDGATDAQ 215
                  8899***********9877..********99986 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0       2.1   6.6e+02      52      66 ..      44      58 ..      32      75 .. 0.65
   2 ?    2.0   0.0      0.11        34      27      61 ..     123     157 ..     116     171 .. 0.82
   3 ?    8.5   0.0    0.0011      0.35     144     179 ..     184     217 ..     172     249 .. 0.75

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 2.1
    TIGR01487 52 avligvsgavvaEnG 66
                 av   v+ +v+ E+G
  MMETSP1061-20121228|22724_1 44 AVCFDVDSTVINEEG 58
                 444444444444444 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.11
    TIGR01487  27 irklekkGikvvlvtGnevkfvealavligvsgav 61 
                  +  l++k + v lv+G    ++e la ++++  a 
  MMETSP1061-20121228|22724_1 123 VETLHSKNVDVFLVSGGFRIMIEPLAEILKIPIAN 157
                  5667888999********99999999999986555 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0011
    TIGR01487 144 kgvdKgvgvkklkellGlkkeevaaiGDsenDldlF 179
                  ++++K ++++ lke+  +++e+++++GD+ +D ++ 
  MMETSP1061-20121228|22724_1 184 QDMGKPKALEQLKEK--FSYENMVMVGDGATDAQAK 217
                  688999********9..67888**********8764 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       1.4   4.4e+02       2      13 ..      45      56 ..      44      81 .. 0.68
   2 ?   -0.1   0.0      0.38   1.2e+02      23      54 ..     121     152 ..     108     172 .. 0.57
   3 ?    8.1   0.0    0.0012      0.38     181     218 ..     180     215 ..     161     248 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 1.4
    TIGR00099  2 ifiDlDGTLlsk 13
                 +++D+D T +++
  MMETSP1061-20121228|22724_1 45 VCFDVDSTVINE 56
                 799999999883 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.38
    TIGR00099  23 ealaklrekGikvvlaTGRsykevkeilkelg 54 
                    ++ l +k++ v+l++G     ++++ + l+
  MMETSP1061-20121228|22724_1 121 TLVETLHSKNVDVFLVSGGFRIMIEPLAEILK 152
                  34455555555555555544444444444444 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0012
    TIGR00099 181 eitakgvsKgsalqslaeklgislenviaiGDseNDie 218
                  e t++++ K +al++l e  ++s en++++GD+  D++
  MMETSP1061-20121228|22724_1 180 EPTSQDMGKPKALEQLKE--KFSYENMVMVGDGATDAQ 215
                  668999************..8999*********99987 PP

>> TIGR03972  rSAM_TYW1: wyosine biosynthesis protein TYW1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0    0.0002     0.064     126     160 ..     108     143 ..      70     162 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.0002
    TIGR03972 126 LsGEPt.lYpkleelieelkkrglttFlvtnGtlpe 160
                  L+  P  l p l+ l+e+l+++++ +Flv+ G + +
  MMETSP1061-20121228|22724_1 108 LEAHPLeLTPGLQTLVETLHSKNVDVFLVSGGFRIM 143
                  55566437899*******************997643 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.39
# Mc/sec: 869.77
//
Query:       MMETSP1061-20121228|22726_1  [L=859]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.2e-06   23.6   0.7    1.3e-05   22.8   0.5    1.3  1  TIGR04033 export_SdpB: antimicrobial peptide system protein, SdpB family


Domain annotation for each model (and alignments):
>> TIGR04033  export_SdpB: antimicrobial peptide system protein, SdpB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.5   3.2e-09   1.3e-05     145     257 ..     305     416 ..     289     432 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.2e-09
    TIGR04033 145 vkklvaaaalvllrvqvaiiyldaaveklkvkeWaeGtalyyvlsdPvfGapeylaslmspllespl..vvlltWsvlvlelilalgilsnarlrrialvlgillhlGiivfiGl 257
                     + a+  + + +v    iy+ aa++k++ + W+ G al +   d  +G      + ++  l + +  + + tW+ l +e++  ++ +   + r+   +  ++lh+Gi +   +
  MMETSP1061-20121228|22726_1 305 LSTSWAMWPFRFWQVYTCLIYMGAALGKFNSRTWIRGDALSWCWYDEGLGRF--YPEFVTEFLYNRMipIKIQTWLSLAIEMLCFIT-IWPLKTRKFTFIAIVILHIGIELALVM 416
                  4445555555566777889***************************988864..4455555666665488999********866554.456677888888888999999765544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (859 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.50
# Mc/sec: 2267.57
//
Query:       MMETSP1061-20121228|22737_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1414.17
//
Query:       MMETSP1061-20121228|22753_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-07   28.5   0.0    1.6e-07   28.2   0.0    1.1  1  TIGR02961 allantoicase: allantoicase


Domain annotation for each model (and alignments):
>> TIGR02961  allantoicase: allantoicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0     4e-11   1.6e-07       2      36 ..      58      92 ..      57      93 .] 0.95

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 4e-11
    TIGR02961  2 lvdlaseklGgkvlaatDefFaeaenllkkeapif 36
                 +++las+  G+kvl+atD++Fa ae ll++ +pif
  MMETSP1061-20121228|22753_1 58 YTNLASAMSGAKVLFATDDWFAIAETLLDDGPPIF 92
                 78*******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 681.94
//
Query:       MMETSP1061-20121228|22748_1  [L=924]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (924 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       495  (0.120673); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.82u 0.16s 00:00:00.98 Elapsed: 00:00:00.77
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|22765_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1061-20121228|22766_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-33  114.7   0.0    2.4e-33  113.7   0.0    1.5  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A
    3.8e-08   30.7   0.0    8.2e-08   29.6   0.0    1.5  1  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family


Domain annotation for each model (and alignments):
>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.7   0.0   1.2e-36   2.4e-33       2     262 ..      64     366 ..      63     376 .. 0.74

  Alignments for each domain:
  == domain 1    score: 113.7 bits;  conditional E-value: 1.2e-36
    TIGR00742   2 klsvaPmlditdrhfryllrllskkvllytemvtakaiihg.dkkkllkf..........se.eekPvalqlggsdpedlakcaklaee..fgydeinlnvGcPsdrvq.ngnfGaclmanadlvadivkamke.........aveiPvtvktriGidel.........dsyeelvdfveivsdkGikefivharkawlkGlsPkenreiPplryervyqlkkdfp.nllieinGGiksleeikkh........lsfvdsvmvGreayenPyllaavdrelfdetdeiltrkeiveqmlpyie 262
                  ++ +aPm  +t+   r l+ lls  ++ +tem   + i    +  ++l+           ++ + + + lqlg++dp+ l++c++ + +   +  einln GcP+      +++Ga lm +a l +++v + ++          ++  v+vk riG+ +            ++ l d+v ++ ++G ++ i+har a+l+GlsP +nr +P l+y +v ++  +f+ ++ i +nGGi++l++++           s + s m Gr   + P  l  ++  l +e+  + ++  i +++  y++
  MMETSP1061-20121228|22766_1  64 QFHIAPMQCYTNAQTRQLFDLLSPSSIKWTEMEKLDDIFPRtESVEFLSDalekrfgspaDPrDKDNLVLQLGTNDPDRLQTCVEHTTKlyDNLREINLNCGCPAIESGgASTYGASLMKDARLTGQLVASARKglegspatsDISPRVSVKCRIGVFDTdndmrplteSDHQYLRDYVSTIHEQGANHVILHARPAILSGLSPVKNRIVPTLDYGFVERIASEFEgKVDITLNGGITTLDQLRSFqnrsqnddASTISSYMAGRWCLRRPLDLIGIEALLAGEEMPDSSSSLIRNAIERYVD 366
                  689*****************************9999887541333333321111111111221234689****************9999766899*********9877515689**************999887222222111234459********88878899999555788***************************************************84788***********99754111111113456667777777777766666666555555555555555555555555 PP

>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.0     4e-11   8.2e-08      11     170 ..      66     259 ..      60     265 .. 0.76

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 4e-11
    TIGR00737  11 vlaPlagvtdlafRrlvkeye.aglvvsEmvssealveksektkklleiae..........dekpisvQlagsdpdvmaeaAkiaeel..gadiiDlNmGCPvkkitk.kgaGsallkepeliekivkavveave........vP.VTvKiRiGw...........deehinveeaariaedaGaqavalHgRT 170
                   +aP+  +t+ + R+l   +  +++  +Em + + +  ++e+++ l +  e          d+ +  +Ql + dpd +    + + +l  +   i lN+GCP+      +  G++l+k+ +l +++v+ + +  e         P V vK RiG            +++h+ + + +  ++++Ga+ v lH+R 
  MMETSP1061-20121228|22766_1  66 HIAPMQCYTNAQTRQLFDLLSpSSIKWTEMEKLDDIFPRTESVEFLSDALEkrfgspadprDKDNLVLQLGTNDPDRLQTCVEHTTKLydNLREINLNCGCPAIESGGaSTYGASLMKDARLTGQLVASARKGLEgspatsdiSPrVSVKCRIGVfdtdndmrpltESDHQYLRDYVSTIHEQGANHVILHARP 259
                  589***************99977899******999998887766554433211111111225667899********9999888555541155679*******8665541566******************99999988888974459*******654433333333467889999*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1851.62
//
Query:       MMETSP1061-20121228|22783_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1061-20121228|22793_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.27
# Mc/sec: 322.64
//
Query:       MMETSP1061-20121228|22788_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1921.76
//
Query:       MMETSP1061-20121228|22786_1  [L=1195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.48u 0.14s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 4262.89
//
Query:       MMETSP1061-20121228|22794_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 979.77
//
Query:       MMETSP1061-20121228|22826_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-16   57.3   0.0    2.5e-16   57.2   0.0    1.0  1  TIGR03402 FeS_nifS: cysteine desulfurase NifS
    5.2e-10   37.0   0.0    5.7e-10   36.8   0.0    1.0  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
    9.6e-09   32.5   0.0      1e-08   32.5   0.0    1.0  1  TIGR02006 IscS: cysteine desulfurase IscS
    3.4e-08   30.5   0.0    3.5e-08   30.5   0.0    1.0  1  TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family


Domain annotation for each model (and alignments):
>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   2.4e-19   2.5e-16      25      85 ..       1      66 [.       1      73 [. 0.89

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 2.4e-19
    TIGR03402 25 ekfGnpsslhsfgkevkkaveeaRekv.akllgaeeee....iiftsggtesdntaiksalaakke 85
                 e+fGnpss h++g+e ++a+  aR+++ ++llga+++e    i ft++gtesdn ai+ al+a+k+
  MMETSP1061-20121228|22826_1  1 EHFGNPSSSHAYGTEPRRAIAGARKQIlTELLGASDDEdpsaIWFTGCGTESDNLAIRLALEATKS 66
                 79************************836799**97766777*******************99876 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.8   0.0   5.5e-13   5.7e-10      24      79 ..       1      60 [.       1      72 [. 0.83

  Alignments for each domain:
  == domain 1    score: 36.8 bits;  conditional E-value: 5.5e-13
    TIGR03235 24 eefGnassrthefgakakkavekarkqv.aealgadkee....viftsgatesnnlallGl 79
                 e+fGn+ss  h++g++ ++a++ arkq+  e+lga  +e    + ft+  tes+nla++  
  MMETSP1061-20121228|22826_1  1 EHFGNPSS-SHAYGTEPRRAIAGARKQIlTELLGASDDEdpsaIWFTGCGTESDNLAIRLA 60
                 78****98.69****************747999*98877677699************9744 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   9.7e-12     1e-08      30      84 ..       2      60 ..       1      73 [. 0.82

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 9.7e-12
    TIGR02006 30 kfGnpasrshkfGweaeeavenarkev.aeliga....dsreivftsGatesdnlaikGv 84
                 +fGnp+s sh++G e   a+  ark++ +el+ga    d+  i ft   tesdnlai+ +
  MMETSP1061-20121228|22826_1  2 HFGNPSS-SHAYGTEPRRAIAGARKQIlTELLGAsddeDPSAIWFTGCGTESDNLAIRLA 60
                 6****65.9***************998478898755446778***************865 PP

>> TIGR03403  nifS_epsilon: cysteine desulfurase, NifS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   0.0   3.4e-11   3.5e-08      25      78 ..       1      58 [.       1      71 [. 0.84

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 3.4e-11
    TIGR03403 25 diygnpnslhkfgtethpaiaealdkly.kginardedd...ivitscatesnnwvlk 78
                 +++gnp+s h +gte   aia a +++  + ++a+d +d   i +t c tes n  ++
  MMETSP1061-20121228|22826_1  1 EHFGNPSSSHAYGTEPRRAIAGARKQILtELLGASDDEDpsaIWFTGCGTESDNLAIR 58
                 68*******************99988761456787766656599**********9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 390.69
//
Query:       MMETSP1061-20121228|22822_1  [L=434]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (434 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1790.10
//
Query:       MMETSP1061-20121228|22844_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.10s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 1198.90
//
Query:       MMETSP1061-20121228|22859_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 442.16
//
Query:       MMETSP1061-20121228|22843_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2018.33
//
Query:       MMETSP1061-20121228|22867_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|22868_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2116.38
//
Query:       MMETSP1061-20121228|22894_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 1050.84
//
Query:       MMETSP1061-20121228|22913_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 722.47
//
Query:       MMETSP1061-20121228|22916_1  [L=1243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.2e-137  456.4  63.9   5.3e-137  456.1  44.3    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
   7.1e-118  392.8  64.5   9.5e-118  392.4  44.7    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    1.1e-06   26.4   0.1    3.7e-05   21.3   0.0    2.8  2  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    3.5e-06   24.1   0.1    3.5e-06   24.1   0.1    7.3  6  TIGR00634 recN: DNA repair protein RecN
    1.9e-05   20.6   0.0    1.9e-05   20.6   0.0    4.0  5  TIGR00618 sbcc: exonuclease SbcC
    6.3e-05   19.9   0.0    0.00073   16.4   0.0    2.4  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    0.00013   19.5   0.0    0.00053   17.5   0.0    2.0  2  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  456.1  44.3    9e-140  5.3e-137       1    1160 [.      30    1197 ..      30    1200 .. 0.76

  Alignments for each domain:
  == domain 1    score: 456.1 bits;  conditional E-value: 9e-140
    TIGR02169    1 yieklelenFKSFgkkkeIp.flkgftvisGpNGSGKSNiiDallFaLGlssskalRAerLsdLiskgakeaksakeaeVtvtfknddkklp.......delevsrrlkvtkegkySyYylNgksvrlseihdlLakagiypeg.YnvVlQGDvtkiismsaveRRkiIdeiaGvaeFdekkekaleeLeeveeriervelvie.evrqqlerLekerekaerYkeLkkekreleltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedleka...ekelrklkeeleklekelselerelaeleaqakaseeesreskaveevlkasieGvlGtvaqLgkve.erYalAiEvAaGnrlnnvVVeddavAkeaIellkerkagratFLPLnkmrsk.......erdlsilaedGvidf.avdlvefdekyepvvkyvlgdTlvvedleaarrlmg..kfRlVtLeGellekSGaitGGsraersge.lvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev........keeee...epeeelslekvkkelekveeeleaL.epvNmkAieeYeevekrldelkekrekLeeErkellerieelekkkrevFmeaFeainenfkeifaeLsdGtgeLiLenPddPfa.gglelkakPkdKavqrleamSGGEKsltALsfifAiQrykPspfYafDEvDmfLDgvNvervaklikekakeaQfivvslrkpmleaAdraiGvtlrrdgesqv 1160
                   +i+++++ +FKS++++++++ f   f++i+G NGSGKSNi+D++ F+LG +   ++RA +Ls+L++k+  +++ +++a+Vtv+f+n+d++ +       +e++v+r++     gk S Y +Ng+++    +++l  ++ ++ +    +++QG +tk+++m + e   +++e aG+  ++ k  +a + +++ + +++++++v++ e+   lerL+ e++  + + + ++  + +e  + ++   ++++ + +  +  +e+ee++ +le+++e+ ++++ee+e+  ++l+ k++ + e    ++k++ e+l+ ++ k+ +a ++++e  ++ae+ la+a a + ++++  +e e++i++ +k  +++ ++  e++++leel  + +++++    ++   +e  +  +++ + + ++k+ + +     k++++++++l + l+++e+++++ ++++++l+ + + + qk++ql++ l+++   ++e  kl +e ++l++ ++el+  ++ l aq     ++   +  +  v + +++ v G+va+L++v+ + + +A+Ev aG++l  vVV++  ++k aI l + +   r+t +PL k++         ++  +i +  G+  + a++lv f e++++++ yv+g  +vv+   aa ++ +  k R VtL+G+++++SG itGGs+++ +++ ++ ++  e++++l+++++ L   l +l + +r    + dels+kls ae+++e i+k++       ++       leekl+++++elee+++e  ++++e +e+    ++lke   +l ++ +e+ + +ie+ ++k ++   +  ++++e+e++ + l +e e+l+  +  ++e +  +e+   e ++e    ++ + e+++  +e++ + +++ee+ ++ +++  e++ e+  l kk e+ ++e +k    +++ +++++ +e+ + +l ++         + ++e   +  + ++ +++ ++l++++ e e L  ++N k +   e++e ++ el  kr++ e+ +k+++  ieel+ kk++   ++++++n+ f +if++L  G  +  Le P+   a  gle+k+   d   + l  +SGG +sl ALs+i  +  +kP+p+Y++DEvD+ LD    ++++++ k++ +++Qfivvsl++ m+++A+ +       dg+s v
  MMETSP1061-20121228|22916_1   30 HIQQVVIDGFKSYARRTVVEgFDPHFNAITGLNGSGKSNILDSICFVLGITNLSQVRAGNLSELVYKQ--GQAGVTKASVTVVFNNEDEATSpvgyeqcKEVTVTRQVL--LGGK-SKYLINGRNSPAGQVQNLFHSVQLNVNNpHFLIMQGRITKVLNMKPNETLGMVEEAAGTRMYETKRIAAIKTIDKKQAKVDELNSVLSeEITPTLERLRGEKQSYLMWSKNNADIERIERFVVASDFLKAQEALDNNVEGSSEMEEQVVELEAQVEAYKRQIEERENAANDLSSKLKGEFEASHSKLKKEEEKLSKQLVKVTSAWQNSQELTKEAEKDLAEARALVTETNNICREKEQQIAHDAKAVDEIVSAKLEAEQTLEELTLKFQNMSAGISMSQ--GDEGMTLPDQIAKAHSDSKTAEAKV----KQATMKIKHLTKSLTSVEKQMEKEQKSVDALNRRREVSIQKANQLRNTLSELnfdQEEFIKLDQEKDHLSSSVEELNGIVETLTAQL---GSRL-AFDYTDPVRGFDRSKVKGLVAKLIQVHnPIHSTALEVVAGGKLYQVVVDEAITGK-AI-LDRGNLKRRVTIIPLDKIQPRrvtaaacKKANEIANSLGAKAWpAIELVGFHEEIRSAMEYVFGASIVVDGARAANQICDttKTRTVTLDGDVYDPSGTITGGSKSNFGNTlGELTKLMESSKQLSADKQRLSVVLTALSQMKR-KSTQFDELSHKLSLAEAELEGIQKQV-------SQ--TSYGVLEEKLDSMSKELEEANQEYSSMQEEQKEKWDLYHELKEREVELTQQ-RENMLGQIEKDIKKAKKAAVDAVKKAREAESSKETLLMELESLRADVVSAEEAVSSAEASFTEANEEELGKEIVVGEVKALWDEAKLEQAKFEERISQFSSKLAEIKREKTSLTKKAEKFALESKKLAVSISRIRKERQHAEKVVVSLLKNHpwieseksAFGVEggdYDFTAANPDEMSAQLHALKDEQELLsKKINKKVMGMIEKAEGEYTELLRKRKVVENDKKKIKSVIEELDIKKKSELERTWKKVNKDFGSIFSTLLPGA-SAKLEPPEGMRAwEGLEVKVAFGDVWKETLSELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQNIGNMLKTHFSQSQFIVVSLKEGMFNNANVIFRTKFV-DGVSTV 1197
                   89************888875599********************************************6..778999*************9989***9555566665555..5566.77********************99976526679**************************************************99986268889**********************************9999999999999****************************************************************************************************************99************999988766543..3444444455555555555333333....666666666666666666666666666655555544444444444444444311134444444444444444444444444444444...3333.555666777778889************99*******************8666555.55.334444568*********998556555444444444448777679*********************************99889*********************7554433133444555555555555555555555544333.33445555555555555555555555.......43..345557788888888888888888888888888888888888888888765.5667888888888888888888888888888888888888888887777777776666655555555444444455555544444444444444444444444444444444444444444444444444444444444444444444433321000002222220002223344455555555555555555336*******************************************************************773.456788887544379*************************************************************************************9866544444.777766 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  392.4  44.7  1.6e-120  9.5e-118       2    1164 ..      31    1186 ..      30    1199 .. 0.75

  Alignments for each domain:
  == domain 1    score: 392.4 bits;  conditional E-value: 1.6e-120
    TIGR02168    2 LkklelaGFKSFadkttin.fekgitgiVGPNGcGKSNivDAirWVLGEqsakaLRgekmeDVIFaGseerkplslAeVeLvfdNsdgllpg...adyseisitRrlyRdGeseYliNgqpcRlkDiqdlfldtGlgkes.ysiieqGkieeiieakpeerRailEEAAGvskYkerkketekkLerteenLeRledil.kElerqlksLerQaekAekykelkeelrelelallvlrleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeele.elqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelr.sevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeel...eeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveek.yeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgv....akdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeee.................aeeelkrleekikeLG.pVNlaAieEyeelkeRyeflekqkeDleeAkekLeeaIeeidkearerfkdtfekvnenfqevFsklFggGeaeLeltdpedlLeagieIkaqPpGKklqnlslLSGGEKALtAlaLlFAifkvkPaPfciLDEVdApLDdaNveRFakllkefskktQFIviTHnkgTMeeadqLy 1164
                   ++++ + GFKS+a++t+++ f++   +i G NG+GKSNi+D i +VLG    ++ R++++++ ++   + ++ +++A+V++vf+N+d++ +     + +e+++tR++   G+s+YliNg+++    +q+lf    l  +  + +i qG+i ++++ kp+e   + EEAAG   Y +++  + k +++ ++  + l+ +l +E+   l++L+ ++++   + + +++++++e+ +++ ++ +++e l++  e  +e+ee++ elea++++++ ++ee +++ + l+++l+ e ++   +lk+e ++l++++ +  +  +++++  +e+e++l+e+++  +e+++   e e++++  ++ ++++ ++  eae++leel+ + +++ + +   + +e   l         ++ ++ ++ + +e+++++++ +i++l k+l+ +e+++++ q++++ l++  e   ++ ++l+++l+el   +ee+ ++ q+ +++++++++l++ +e l +++ +   ++      +   ++ + + g++++li+v +   ++A+e++ g++l +vvv+++ + k++++  + ++  rvt++pld i++++++a+  + ++++   lg+    a +lv + e++++a+e+++g  +vvd  + A+++   ++   r vtldG++  ++g+itggs+++  ++l + +++ e ++++ + +++++   ++l++++++ ++ +    +l ++l  +e +l+  +k++++  ++   lee+l++ +kelee+++e ++ +ee +e+ +  +e +e+ +el+++ e++  ++++  ++ ++   ++ +  ++a+e              +e + e+l  ++e+l++++ s+e++++++e++ +e++ee   ++  + ++++  +e++ e+++ +e++ + ++k+ e++re ++l++k +++ l+ ++l v i++++++ +   ++    +++++  +e+e+++                 + ++l+ l+ + + L  ++N + +  +e+ +  y++l ++++ +e+ k+k++++Iee+d + +++++ t +kvn++f ++Fs l  g +a+Le  ++      g+e+k+ +    +++ls LSGG ++L Al+L++++++ kPaP +iLDEVdA+LD + +++  ++lk+  +++QFIv++ ++g  ++a+ ++
  MMETSP1061-20121228|22916_1   31 IQQVVIDGFKSYARRTVVEgFDPHFNAITGLNGSGKSNILDSICFVLGITNLSQVRAGNLSELVYK--QGQAGVTKASVTVVFNNEDEATSPvgyEQCKEVTVTRQVLLGGKSKYLINGRNSPAGQVQNLFHSVQLNVNNpHFLIMQGRITKVLNMKPNETLGMVEEAAGTRMYETKRIAAIKTIDKKQAKVDELNSVLsEEITPTLERLRGEKQSYLMWSKNNADIERIERFVVASDFLKAQEALDNNVEGSSEMEEQVVELEAQVEAYKRQIEERENAANDLSSKLKgEFEASHSKLKKEEEKLSKQLVKVTSAWQNSQELTKEAEKDLAEARALVTETNNICREKEQQIAHDAKAVDEIVSAKLEAEQTLEELTLKFQNMSAGISMSQgDEGMTL-------PDQIAKAHSDSKTAEAKVKQATMKIKHLTKSLTSVEKQMEKEQKSVDALNRRREVSIQKANQLRNTLSELnfdQEEFIKLDQEKDHLSSSVEELNGIVETLTAQLGSRLAFD--YTDPVRGFDR-SKVKGLVAKLIQVHNPiHSTALEVVAGGKLYQVVVDEAITGKAILDRGNLKR--RVTIIPLDKIQPRRVTAAACKKANEIANSLGAkawpAIELVGFHEEIRSAMEYVFGASIVVDGARAANQICDTTKT--RTVTLDGDVYDPSGTITGGSKSNFGNTLGELTKLMESSKQLSADKQRLSVVLTALSQMKRKSTQFD----ELSHKLSLAEAELEGIQKQVSQ--TSYGVLEEKLDSMSKELEEANQEYSSMQEEQKEKWDLYHELKEREVELTQQRENMLGQIEKDIKKAKK---AAVDAVKKARE--------------AESSKETLLMELESLRADVVSAEEAVSSAEASFTEANEEELGKEIVVGEVKALWDEAKLEQAKFEERISQFSSKLAEIKREKTSLTKKAEKFALESKKLAVSISRIRKERQHAEKVVVSLLKNHPW-IESEKSAfgveggdydftaanpdeMSAQLHALKDEQELLSkKINKKVMGMIEKAEGEYTELLRKRKVVENDKKKIKSVIEELDIKKKSELERTWKKVNKDFGSIFSTLLPGASAKLEPPEGMRAW-EGLEVKVAFGDVWKETLSELSGGQRSLLALSLILSLLLFKPAPMYILDEVDAALDLSHTQNIGNMLKTHFSQSQFIVVSLKEGMFNNANVIF 1186
                   78999*************77*********************************************7..88899**************99887789999**************************************97652789****************************************************9983579***************************************************************************999999988752556666667777777777777777776666666666666666666666666666666666666666666555555555455555555555555555543331333444.......5555555555555555555555556666666666666666666666666666666666666666655554222566777778888888888888888888777777766665..3333333322.34789********8652899*****************998888888888888..********999998887665554444444433222489************************98877776666665..8********************766666666655555555555555555555555555544444443....3333333334444444444443..33445666777777777777777777666666666666666666666666555555554444333332...22222222222..............222233344444444444444444444444444444444444444444445566666666667777777777777777777777777777777777777777777777777777777777777666.5665555667777777777777779999****9999999846**************************************************************************988555544.4*****************************************************************************98888877777766 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4   0.0      0.08        47      30      45 ..      57      72 ..      45      92 .. 0.83
   2 !   21.3   0.0   6.3e-08   3.7e-05     115     183 ..    1101    1173 ..    1086    1183 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.08
    TIGR01189 30 vveGpnGiGKttLLRi 45
                 +++G nG+GK+ +L  
  MMETSP1061-20121228|22916_1 57 AITGLNGSGKSNILDS 72
                 79*********99864 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 6.3e-08
    TIGR01189  115 vgLsgledlpvaqLsAGqkrRlala....rLllskaplWiLDEPttalDkegvellaellaaHlargGivlla 183 
                   v   ++ +  +++Ls Gq+  lal+     Ll + ap++iLDE  +alD + ++ + ++l+ H ++   ++++
  MMETSP1061-20121228|22916_1 1101 VAFGDVWKETLSELSGGQRSLLALSlilsLLLFKPAPMYILDEVDAALDLSHTQNIGNMLKTHFSQSQFIVVS 1173
                   6666777778899*******999762222578899*****************************998888765 PP

>> TIGR00634  recN: DNA repair protein RecN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.1   5.9e-09   3.5e-06      19     137 ..      50     170 ..      31     239 .. 0.71
   2 ?    0.6   2.6     0.078        46     338     388 ..     271     320 ..     208     324 .. 0.77
   3 ?  -11.3  23.8         7   4.1e+03     157     398 ..     275     503 ..     266     530 .. 0.60
   4 ?   -1.9  18.2      0.44   2.6e+02     207     387 ..     703     887 ..     698     908 .. 0.82
   5 ?    1.5   2.9     0.041        24     329     382 ..     906     958 ..     894     980 .. 0.77
   6 !   11.8   2.8     3e-05     0.018     441     522 ..    1114    1193 ..     989    1233 .. 0.67

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 5.9e-09
    TIGR00634  19 efergltvltGETGaGKsividalelllGqradaelvRkgeeravvegvFtlesedd...adl.talqeieleeededeevillrkisrdgrsraylngklvsakslkeltsellelhgQndq 137
                   f+  ++++tG  G+GKs ++d++ ++lG     + vR g+ +  v    +   ++      + ++ +++++   ++ +ev + r++   g+s++ +ng+  +a ++++l +  ++l+  n +
  MMETSP1061-20121228|22916_1  50 GFDPHFNAITGLNGSGKSNILDSICFVLGITN-LSQVRAGNLSELVYKQGQAGVTKAsvtVVFnNEDEATSPVGYEQCKEVTVTRQVLLGGKSKYLINGRNSPAGQVQNLFHS-VQLNVNNPH 170
                  49999************************977.899****99999965555443333223222123344455556778999**************************998653.344433333 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.078
    TIGR00634 338 ldqLedseesleaLeeevekleeelakaaeelskiRrkaAekLakrveqeL 388
                   ++L++  e   ++ee+v +le+++++  +++ ++R +aA++L  +++ e 
  MMETSP1061-20121228|22916_1 271 QEALDNNVEGSSEMEEQVVELEAQVEAYKRQI-EERENAANDLSSKLKGEF 320
                  46788888888888888888888888888887.568888888888887765 PP

  == domain 3    score: -11.3 bits;  conditional E-value: 7
    TIGR00634 157 eekvkaleelyqallkarqelkelqqkeqelaqrldlLkfqle.EleevelesgEdeaLeeeqekls.eleklkelaqealaaLse.dadvqesall.eslaearaelaseidaslkelaekve...ealteveeatrelreyldeleadperlneieerlaeikrLkrKygasveevleyaekikeeldqLedseesleaLeeevekleeelakaaeels..kiRrkaAekLakrveqeLkeLamekaef 398
                  +++v+   e+ ++ +++++++ +++++ +e+++ ++ L+ +l+ E e        + +L++e+ekls +l+k++ + q+++++  e ++d+ e  +l +  +++  e +++i    k++ e v+   ea++ +ee+t + ++++ +++     + + +e ++   ++++ +             +k   ++++++  + ++L ++++++e++++k+ + +   + Rr++  + a+++ + L+eL++ + ef
  MMETSP1061-20121228|22916_1 275 DNNVEGSSEMEEQVVELEAQVEAYKRQIEERENAANDLSSKLKgEFEA------SHSKLKKEEEKLSkQLVKVTSAWQNSQELTKEaEKDLAEARALvTETNNICREKEQQIAHDAKAVDEIVSaklEAEQTLEELTLKFQNMSAGIS-----MSQGDEGMTLPDQIAKAHSD-----------SKTAEAKVKQATMKIKHLTKSLTSVEKQMEKEQKSVDalNRRREVSIQKANQLRNTLSELNFDQEEF 503
                  566677777888888899999999999999999999999888723332......2456788888887447888888888877777777776655544044555556666666666666666665333567788888888888888888.....33344444444444444433...........3333333333333333344444444444433333222113455555555666666666666666666 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 0.44
    TIGR00634 207 esgEdeaLeeeqeklseleklkelaqealaaLse.dadvqesalleslaearaelase..idaslkelaekveealteveeatrelreyldeleadperlneieerlaeikrLkrKygasveevleyaekik.eeldqLedseesleaLeeevekleeelakaaeelskiRrkaAekLakrveqe 387
                  + gE  +L e  ++ls  ++   ++ +al ++    ++  e +   slaea++e +++   + s+  l ek++++  e+eea +e   + +e +   +  +e +er  e+ +  +    ++e+ +++a+k+  + +++  ++e+s+e+L  e+e+l++++  a e++s    +  e+ ++++ +e
  MMETSP1061-20121228|22916_1 703 TLGELTKLMESSKQLSADKQRLSVVLTALSQMKRkSTQFDELSHKLSLAEAELEGIQKqvSQTSYGVLEEKLDSMSKELEEANQEYSSMQEEQKEKWDLYHELKEREVELTQQRENMLGQIEKDIKKAKKAAvDAVKKAREAESSKETLLMELESLRADVVSAEEAVSSAEASFTEANEEELGKE 887
                  668899999999999999888888888888888844445555666778888877666555788999****************************9*******************9999999998888888652678999999*************************998777666655555444 PP

  == domain 5    score: 1.5 bits;  conditional E-value: 0.041
    TIGR00634 329 eyaekikeeldqLedseesleaLeeevekleeelakaaeelskiRrkaAekLak 382
                  + +e+i +  ++L + + ++ +L ++ ek + e +k a+ +s+iR++  ++ +k
  MMETSP1061-20121228|22916_1 906 KFEERISQFSSKLAEIKREKTSLTKKAEKFALESKKLAVSISRIRKER-QHAEK 958
                  4456666666778899999**************************864.22333 PP

  == domain 6    score: 11.8 bits;  conditional E-value: 3e-05
    TIGR00634  441 ASGGELSRvmLalkvvlsss..aavttliFDEvDvGvsGktaqaiakkLaklsekkQvlvvTHlpqvaaladahlkvekevlde 522 
                    SGG   R +Lal+++ls    ++ + +i DEvD+ +     q+i++ L+    ++Q +vv  +  +   a++ + +  +++d+
  MMETSP1061-20121228|22916_1 1114 LSGGQ--RSLLALSLILSLLlfKPAPMYILDEVDAALDLSHTQNIGNMLKTHFSQSQFIVVSLKEGMFNNANVIFRT--KFVDG 1193
                   47775..77999999**999899**************************************8777666666555543..34444 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   3.2e-08   1.9e-05       1      51 [.      29      77 ..      29     115 .. 0.89
   2 ?   -4.3  26.4       1.1   6.4e+02     555     882 ..     203     523 ..     170     535 .. 0.80
   3 ?   -6.3  22.9       4.5   2.6e+03     638     865 ..     720     938 ..     705     964 .. 0.62
   4 ?   -4.6   2.5       1.3   7.9e+02     821     882 ..     995    1054 ..     989    1067 .. 0.60
   5 ?   -4.1   0.1      0.97   5.7e+02      75     101 ..    1213    1239 ..    1205    1242 .. 0.72

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 3.2e-08
    TIGR00618  1 mkplkLelknltsykgeslidftalglklfvicGktGaGKtsLldAItyAL 51
                 m +++  + +++sy    ++     + ++ +i+G +G+GK+ +ld I++ L
  MMETSP1061-20121228|22916_1 29 MHIQQVVIDGFKSYARRTVVEGF-DP-HFNAITGLNGSGKSNILDSICFVL 77
                 899***********999888744.57.*********************976 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 1.1
    TIGR00618 555 erkqlkelkeqiqeiqqelsiL.aqkrnelkeeleklqnlveelqkllekeseaekklaleqheeleklqeeldkqevaleeqqieqelalkltalealeltLaqeevrekllsvrelkkeklesrqaklkklqskkeqltyikeeLeqkqellreletkveelsrefeelenasssakseleaeeealnqslkeleeqaktklkareeeqerkseevvvelqtgaeleelkaelefkrreleesvqelkeleaeieqelpededileleqeklvqeeeqlkskleeks...kklgeikrqlkkyeetkkqleqltqkqakiiqlseklegl 882
                  e+k+++  k  i++ q ++  L   + +e++  le l+ + +  + + ++++  e+  +       +k qe+ld+        ++e++    ++  ea++ +    e   + ls++ lk e  +s  + +k+++++ +ql       + +qel +e e+ + e + ++ e +n+   ++++++   +a ++++ +++ +a++ l +++++ ++    + + +  g+e   l      ++ ++  + +    +  +   ++++  + l+   +++ +e+++++ + +++    +k  ++++ l +++  +  + +l q++ +++  +e+l+g+
  MMETSP1061-20121228|22916_1 203 ETKRIAAIKT-IDKKQAKVDELnSVLSEEITPTLERLRGEKQSYLMWSKNNADIERIERFVVASDFLKAQEALDNNV--EGSSEMEEQVVELEAQVEAYKRQIEERENAANDLSSK-LKGEFEASHSKLKKEEEKLSKQLVKVTSAWQNSQELTKEAEKDLAEARALVTETNNICREKEQQIAHDAKAVDEIV-SAKLEAEQTLEELTLKFQN--MSAGISMSQGDEGMTLPD----QIAKAHSDSKTAEAKVKQATMKIKHLTKSLTSVEKQMEKEQKSVDALNRRREvsiQKANQLRNTLSELNFDQEEFIKLDQEKDHLSSSVEELNGI 523
                  5666666653.5555556666767888999999999***************99999999999999999999998853..2334455555556666666776666667777777777.99999899999999999999**********************************************9999999866.678888899*****99998..88999999*****99999....5555666655555666666777777777777777777777777776555554457999999999999999999999999999**********997 PP

  == domain 3    score: -6.3 bits;  conditional E-value: 4.5
    TIGR00618 638 ieqelalkltalealeltLaqeevrekllsvrelkkeklesrqaklkklqskkeqltyikeeLeqkqellreletkveelsrefeelenasssakseleaeeealnqslkeleeqaktklkareeeqerkseevvvelqtgaeleelkaelefkrreleesvqe.lkeleaeieqelpededileleqeklvqeeeqlkskleekskklgeikrqlkkyeetkkqleql 865
                   +q+l   ltal +++ + +q ++  + ls  e ++e + ++q  ++    + e+l  +  eLe  ++   + +++ +e + + +el+     ++ el ++ e   ++l+++e+  k++ ka + + +++ e++  ++ ++ ele l a++   ++++     + +   e+e ++e+  +e    l +e    e++++++++ + s kl eikr+   +  +  +++  
  MMETSP1061-20121228|22916_1 720 DKQRLSVVLTALSQMKRKSTQFDELSHKLSLAEAELEGI-QKQVSQTSYGVLEEKLDSMSKELEEANQEYSSMQEEQKEKWDLYHELK----EREVELTQQRE---NMLGQIEKDIKKAKKAAVDAVKKAREAESSKETLLMELESLRADVVSAEEAVSSAEASfTEANEEELGKEIVVGEVK-ALWDEA-KLEQAKFEERISQFSSKLAEIKREKTSLTKKAEKFALE 938
                  468888899************999999999997777764.555555555555566666666666666666666777789999****99....78888876654...34555555555555566666666666677777777888888888777777665443331455677788877766533.333333.34555555555555555555555555444444444333 PP

  == domain 4    score: -4.6 bits;  conditional E-value: 1.3
    TIGR00618  821 eleqeklvqeeeqlkskleekskklgeikrqlkkyeetkkqleqltqkqakiiqlseklegl 882 
                    ++ + l  e+e l +k+  ++k +g i++  ++y e +++ +    +++ki    e+l+ +
  MMETSP1061-20121228|22916_1  995 SAQLHALKDEQELLSKKI--NKKVMGMIEKAEGEYTELLRKRKVVENDKKKIKSVIEELDIK 1054
                   556666444444444444..445667777777777776666665556666666666666554 PP

  == domain 5    score: -4.1 bits;  conditional E-value: 0.97
    TIGR00618   75 ealaelefsldtkiyrvfrtlrversq 101 
                   +   e+++++  ++ r +r++ ++r+q
  MMETSP1061-20121228|22916_1 1213 ANSNEMDMEISSQTARKHRNQSSRRKQ 1239
                   445677888888888999999999987 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.13        77     351     368 ..      56      73 ..      40      93 .. 0.85
   2 !   16.4   0.0   1.2e-06   0.00073     457     526 ..    1112    1185 ..    1102    1187 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.13
    TIGR02857 351 valvGaSGaGKstllkll 368
                   a++G  G+GKs +l+ +
  MMETSP1061-20121228|22916_1  56 NAITGLNGSGKSNILDSI 73 
                  59************9876 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 1.2e-06
    TIGR02857  457 agLSgGqrqRlaLAr....allrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladki 526 
                   ++LSgGqr  laL      +l ++ap+ +lDE  a+LD ++ +++ + l+  +++   ++v+ ++ + ++a+ i
  MMETSP1061-20121228|22916_1 1112 SELSGGQRSLLALSLilslLLFKPAPMYILDEVDAALDLSHTQNIGNMLKTHFSQSQFIVVSLKEGMFNNANVI 1185
                   68**********8751111568999******************************9999999988888887765 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       1.1   6.5e+02      28      44 ..      57      73 ..      52      79 .. 0.86
   2 !   17.5   0.0   9.1e-07   0.00053     115     202 ..    1100    1191 ..    1088    1199 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 1.1
    TIGR01277 28 ailGesGaGkstllnli 44
                 ai G  G+Gks +l+ i
  MMETSP1061-20121228|22916_1 57 AITGLNGSGKSNILDSI 73
                 899**********9877 PP

  == domain 2    score: 17.5 bits;  conditional E-value: 9.1e-07
    TIGR01277  115 qvGiadylerlpeelsGGqrqrvalarc....lvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvv 202 
                   +v  +d  +    elsGGqr  +al+      l ++ p+++lde  +ald    +++  ++k+  ++ +  ++ +   + + a+++ ++ +v
  MMETSP1061-20121228|22916_1 1100 KVAFGDVWKETLSELSGGQRSLLALSLIlsllLFKPAPMYILDEVDAALDLSHTQNIGNMLKTHFSQSQFIVVSLKEGMFNNANVIFRTKFV 1191
                   56677777777889*******99987542222689********************************9999998877777777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       645  (0.15724); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 1.18u 0.16s 00:00:01.34 Elapsed: 00:00:00.62
# Mc/sec: 2646.17
//
Query:       MMETSP1061-20121228|22926_1  [L=1174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.44
# Mc/sec: 3521.71
//
Query:       MMETSP1061-20121228|22949_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1788.68
//
Query:       MMETSP1061-20121228|22966_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 432.92
//
Query:       MMETSP1061-20121228|22972_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 516.48
//
Query:       MMETSP1061-20121228|22981_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.55
# Mc/sec: 235.18
//
Query:       MMETSP1061-20121228|22994_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 339.40
//
Query:       MMETSP1061-20121228|23034_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.11s 00:00:00.42 Elapsed: 00:00:00.46
# Mc/sec: 1985.58
//
Query:       MMETSP1061-20121228|23050_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.50
# Mc/sec: 1641.94
//
Query:       MMETSP1061-20121228|23076_1  [L=611]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-52  176.3   0.0    7.2e-37  125.0   0.0    2.6  2  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    8.1e-52  174.5   0.1    5.2e-32  109.2   0.0    3.5  3  TIGR02053 MerA: mercuric reductase
      2e-41  139.8   0.3    1.4e-32  110.7   0.2    3.6  2  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    2.8e-34  116.6   0.4    7.2e-20   69.1   0.1    2.9  3  TIGR03452 mycothione_red: mycothione reductase
    2.6e-28   97.2   0.0    4.1e-25   86.7   0.0    2.6  2  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    2.9e-26   90.2   0.1    1.8e-24   84.3   0.0    2.2  2  TIGR01438 TGR: thioredoxin and glutathione reductase
    9.5e-22   75.0   1.7    1.6e-18   64.4   0.5    3.4  2  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    3.8e-13   46.7   1.0    5.9e-05   19.8   0.0    3.2  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    6.4e-10   36.2   0.0    0.00071   16.3   0.0    4.0  4  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    6.4e-07   26.3   0.9    0.00014   18.6   0.1    3.0  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
      7e-06   22.7   0.4      0.016   11.6   0.0    2.8  3  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    8.3e-06   21.7   0.1    1.3e-05   21.0   0.0    1.2  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    1.6e-05   21.3   0.0    6.5e-05   19.3   0.0    1.8  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
      2e-05   20.1   0.1     0.0026   13.1   0.0    2.3  2  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    3.6e-05   20.3   0.1     0.0041   13.5   0.0    2.2  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    4.7e-05   20.6   0.0     0.0063   13.5   0.0    3.0  3  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    0.00061   16.1   0.0       0.01   12.1   0.0    2.5  3  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0011   15.6   2.2     0.0033   14.1   0.9    2.0  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0016   15.1   0.0       0.11    9.1   0.2    2.8  3  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
     0.0037   13.7   0.1       0.55    6.5   0.0    2.3  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
     0.0061   14.1   0.7      0.012   13.2   0.5    1.4  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
  ------ inclusion threshold ------
      0.014   12.1   0.3      0.029   11.0   0.0    1.6  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.015   12.1   0.2      0.032   11.1   0.1    1.5  2  TIGR00692 tdh: L-threonine 3-dehydrogenase
      0.031   11.1   0.3       0.47    7.3   0.4    2.1  2  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.0   4.2e-39   7.2e-37       2     333 ..      66     435 ..      65     444 .. 0.76
   2 !   48.3   0.0   7.8e-16   1.3e-13     338     456 ..     471     588 ..     457     592 .. 0.91

  Alignments for each domain:
  == domain 1    score: 125.0 bits;  conditional E-value: 4.2e-39
    TIGR01350   2 ydvvviGgGpgGYvaAiraaq.lglkvalvekeklGGtClnvGCiPtKalLksaevveelke..akelgie.venvkld....lekllerkekvvkklvgGvkaLlkknkvevikGeaklld...kkevevkkekke..kkleakniiiAtGseprelplkleedekvvitseealelkevpeslvivGgGviGvEfasifaklGvk.vtvi...elldrilp..aldaevskvlkkklkkkgvkiltnakvteve.....keedevv............veakkk.evetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvp...giyaiGDvigklmLAhvAskegvvaaekiagke 333
                  yd+ viG+Gp G  aAi aa  +++kv+l++  +  G  +n+      ++   + +++++    ak+++++ +++++l     +++++    +  +  +  +k  l+ ++v+ i+G+ak++d   ++++++  + ++  +++++++++iAtGs+p ++   + +d+ +v +s+++  l+ +p+slvi G+G++ +Efa if++lG++ vt++   +  ++ l+   ld++v+ +l   l  +g+ki   ++v ++e     ++e +              v  + +   ++++ ++ + avGr+pn++ l+l + g+++d+ g i vd++lr + p   ++y  GDv g++ LA + +++gv ++++++g +
  MMETSP1061-20121228|23076_1  66 YDLAVIGAGPVGVQAAIVAAMtAKKKVVLIDAPRASGKLMNEDTNEDLSIGGPTGLFSKALRdsAKRIKVStLRGMNLRedsiWNEITSSCVELASFNARDIKRQLEYAGVTLIEGYAKFSDyggSHHLTICPTGSTatSTISTDKVLIATGSSPFRPVN-IPFDGVRVFDSDSINGLNFLPKSLVITGSGIVAIEFAKIFSNLGCDdVTLLirdNSPKNALKkiGLDKDVAATLVADLICSGIKIERACEVGTIEvpsptNNESY-LpplkiglkarggVDDRPEtCPQEIKCDAYIAAVGRTPNTKSLNLGAAGIKVDKYGGIMVDSNLRAKGPidgNVYGAGDVLGRPFLASTGVAQGVATIKNMFGLN 435
                  9****************999626899*************99865444343333333333222133333333112233321112677777777777888899********************98887777776555444599**************99888.8889989*************************************9549977442222345552258************************996652222134443.2577777444433222222234789***************************************998553335****************************9955 PP

  == domain 2    score: 48.3 bits;  conditional E-value: 7.8e-16
    TIGR01350 338 dykavPsviytePevasvGlteeqakeegievkvgkfpfaangkalaleetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaikeaalaalg 456
                  +  a P  ++++Pe a  Gl+ +qa+e gie   g   +a + + l+ +  +G++k++++k+t++++G+hi g++a eli+  + +v+++ t++++a++ +   t+ E+   aa++ ++
  MMETSP1061-20121228|23076_1 471 NPFAFPVGVWSSPEAAYYGLSVTQAQEMGIEAGEGIALYAECLRGLVFS-PNGLLKLVFQKSTEQVIGVHICGEDACELIHYGMELVKTRRTITDVANSLYSAVTFHEMYRIAAQSCMD 588
                  55678999*************************9999888888888775.79*********************************************************9999988765 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.4    0.0032      0.55       1      31 [.      66      97 ..      66     107 .. 0.78
   2 !  109.2   0.0     3e-34   5.2e-32     100     340 ..     172     442 ..     158     445 .. 0.80
   3 !   53.3   0.0   2.8e-17   4.7e-15     337     453 ..     471     586 ..     459     591 .. 0.94

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0032
    TIGR02053  1 ydlviiGsGaaafaaaikaaelg.akvvlver 31
                 ydl++iG G  ++ aai aa ++ +kvvl++ 
  MMETSP1061-20121228|23076_1 66 YDLAVIGAGPVGVQAAIVAAMTAkKKVVLIDA 97
                 8***********98877666555388999976 PP

  == domain 2    score: 109.2 bits;  conditional E-value: 3e-34
    TIGR02053 100 sydavdllegkakfkd...ektvkvdl....gkevvgakrvliAtGarpavPeipGLkeaeyltseelleldkipeslvviGggaiavElaqlfarlGs.evtllqrse...rllkee..epeisaaveellaeeGvevvksakvkavsk...rnggkk....lvtvek........ndskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnp...kiyAAGDvikglqlesvAakeGvvaAenalggaeakldlev 340
                  +y +v l+eg+akf d    +++ +       + ++++++vliAtG++p +P     + + +++s+++  l+ +p+slv+ G+g +a+E+a++f +lG  +vtll r +   + lk++  +++++a++   l   G+++ ++ +v ++++   +n++      ++ ++         +  ++e++ d+ + A GR+pn+++LnL ++g+k+d++G+i+vd++lr++ p   ++y AGDv++ + l s   ++Gv   +n++g  +  ld+++
  MMETSP1061-20121228|23076_1 172 EYAGVTLIEGYAKFSDyggSHHLTICPtgstATSTISTDKVLIATGSSPFRPVNIPFDGVRVFDSDSINGLNFLPKSLVITGSGIVAIEFAKIFSNLGCdDVTLLIRDNspkNALKKIglDKDVAATLVADLICSGIKIERACEVGTIEVpspTNNESYlpplKIGLKArggvddrpETCPQEIKCDAYIAAVGRTPNTKSLNLGAAGIKVDKYGGIMVDSNLRAKGPidgNVYGAGDVLGRPFLASTGVAQGVATIKNMFG-LNLPLDRDA 442
                  57789*********98433455655435556677888899************65569*****************************************845999988642224566543489999999999999********9999888633345554312222333330011111134579*******************************************9765559*****************************9.899999876 PP

  == domain 3    score: 53.3 bits;  conditional E-value: 2.8e-17
    TIGR02053 337 dlevlPkvvFtdPevAsvGlteeelakagievesrtvkleavpralinretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEglklAAlaF 453
                  +  ++P  v+ +Pe A  Gl+ +++++ gie     +   +  r+l+ ++ +Gl+Klv +k t +v+gv++ +e+A e+i+     +k++ t+ d+++ l +  t+ E  ++AA++ 
  MMETSP1061-20121228|23076_1 471 NPFAFPVGVWSSPEAAYYGLSVTQAQEMGIEAGEGIALYAECLRGLV-FSPNGLLKLVFQKSTEQVIGVHICGEDACELIHYGMELVKTRRTITDVANSLYSAVTFHEMYRIAAQSC 586
                  67799**************************9998888889999987.6799**************************************************************985 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.7   0.2   8.1e-35   1.4e-32       1     327 [.      64     435 ..      64     443 .. 0.74
   2 !   22.8   0.0   3.7e-08   6.4e-06     339     414 ..     478     551 ..     458     570 .. 0.83

  Alignments for each domain:
  == domain 1    score: 110.7 bits;  conditional E-value: 8.1e-35
    TIGR01424   1 ydydlfviGaGsGGvraarlaaalG.akvaiaeedlvGGtcvirGcvPkkllvyase..faeeledakg.yGwe.vekaefdwkkllak...kdkeiarlsgl.ykkllakagvellegraelvd...antvevle....dgktytaekiliavGgrpvkp.elPGaelai.tsdeafdletlPksilvvGgGyiavefagifrGlGv.kvtllyrge...kilr..gfdddvraelaeeleerGirillktvlksie....kvdd........Glkvtls.......kdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvp...siyavGdvtdrinltPvaikeaaafaetefknn 327
                  ydydl viGaG  Gv+aa +aa +  +kv + + ++  G  +        l + + +  f++ l+d++           ++  + + ++      e+a ++    k++l+ agv l+eg a+  d   ++ + + +     + t++++k+lia+G+ p +p ++P   + +  sd +  l+ lPks+++ G+G +a+efa if  lG+  vtll+r++   + l+  g+d+dv a+l ++l   Gi+i   + + +ie     +++        Glk+            +ei +d+ + a+Gr+Pn+k l+l aaG+++++ g i+vd   r++ p   ++y  Gdv  r  l+   + ++ a ++  f+ n
  MMETSP1061-20121228|23076_1  64 YDYDLAVIGAGPVGVQAAIVAAMTAkKKVVLIDAPRASGKLMN-EDTNEDLSIGGPTglFSKALRDSAKrIKVStLRGMNLREDSIWNEitsSCVELASFNARdIKRQLEYAGVTLIEGYAKFSDyggSHHLTICPtgstATSTISTDKVLIATGSSPFRPvNIPFDGVRVfDSDSINGLNFLPKSLVITGSGIVAIEFAKIFSNLGCdDVTLLIRDNspkNALKkiGLDKDVAATLVADLICSGIKIERACEVGTIEvpspTNNEsylpplkiGLKARGGvddrpetCPQEIKCDAYIAAVGRTPNTKSLNLGAAGIKVDKYGGIMVDSNLRAKGPidgNVYGAGDVLGRPFLASTGVAQGVATIKNMFGLN 435
                  9********************9876257999999998887654.4456666666543337777776544133222444455444444440004556666665424679*************998633378888888554233377789**********99856998776552799999*****************************8469*****8622255764578*******************999998888632221222222222224443322433222234689*************************************99988665568*************9999999999999999866 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 3.7e-08
    TIGR01424 339 avfsqPevatvGlseeeare...kftddievyraefrPmkatlsGrqekillklvvdekddkvlGahvvGedaaeiiql 414
                   v+s Pe+a  Gls  +a+e   ++++ i +y   +r +  + +G     llklv ++++++v+G+h++Geda e+i  
  MMETSP1061-20121228|23076_1 478 GVWSSPEAAYYGLSVTQAQEmgiEAGEGIALYAECLRGLVFSPNG-----LLKLVFQKSTEQVIGVHICGEDACELIHY 551
                  68999*****99999888873335778888999889988877666.....9************************9975 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.1   0.1   4.2e-22   7.2e-20       2     203 ..      65     281 ..      64     326 .. 0.81
   2 !   19.4   0.0   5.1e-07   8.7e-05     251     305 ..     354     411 ..     337     435 .. 0.86
   3 !   24.9   0.0   1.1e-08   1.8e-06     338     435 ..     474     570 ..     453     575 .. 0.88

  Alignments for each domain:
  == domain 1    score: 69.1 bits;  conditional E-value: 4.2e-22
    TIGR03452   2 hydliiiGtG...sGnsilderfedkriaivekGtfGGtclnvGc.....i..ptkmfvya.aevakevkesarlgidaeidsvrwpdivsrvfedridpiaasGeeyrrgdktpnidvyesharfv...grktlrte.dgee....itadqvviaaGsrpvipeaiaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGt.kvtlvarsek 203
                  +ydl++iG+G      +i+    ++k++ +++     G  +n        i  pt +f  a  + ak++k s+  g++ + ds+ w++i s   e      +    + +r+ +   +++ e  a+f    g++ l++  +g++    i++d+v+ia+Gs p+ p  i   gvr + ++ i  l+ lp+slvi G+G++a+efa++fs lG+ +vtl++r ++
  MMETSP1061-20121228|23076_1  65 DYDLAVIGAGpvgVQAAIVAAMTAKKKVVLIDAPRASGKLMNEDTnedlsIggPTGLFSKAlRDSAKRIKVSTLRGMNLREDSI-WNEITSSCVE----LASFNARDIKRQLEYAGVTLIEGYAKFSdygGSHHLTICpTGSTatstISTDKVLIATGSSPFRPVNIPFDGVRVFDSDSINGLNFLPKSLVITGSGIVAIEFAKIFSNLGCdDVTLLIRDNS 281
                  7*******9732245799***************99999999865322222244999999984589999*999999999998876.9999988776....889999999999999999999999999878777777753122223466***************************************************************846*****9763 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 5.1e-07
    TIGR03452 251 tveadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsa...egvfalGdvs 305
                  ++++d  + a+Gr+pn+  l++ aaG++vd+ g + vd   r+      +v+  Gdv 
  MMETSP1061-20121228|23076_1 354 EIKCDAYIAAVGRTPNTKSLNLGAAGIKVDKYGGIMVDSNLRAKGpidGNVYGAGDVL 411
                  689999*********************************9996532224799999985 PP

  == domain 3    score: 24.9 bits;  conditional E-value: 1.1e-08
    TIGR03452 338 fvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwamedteglakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqy 435
                    p +v++ p  a  Gl+ ++a+e G +    +  y++   G      +gl kl+ +k+t +++G hi G++a  li   ++ +    ++ ++a+  y
  MMETSP1061-20121228|23076_1 474 AFPVGVWSSPEAAYYGLSVTQAQEMGIEAGEGIALYAECLRGLVFS-PNGLLKLVFQKSTEQVIGVHICGEDACELIHYGMELVKTRRTITDVANSLY 570
                  5699**************************************9886.689***************************998888888888888887766 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.7   0.0   2.4e-27   4.1e-25       2     327 ..      65     433 ..      64     443 .. 0.78
   2 !    7.5   0.0    0.0026      0.45     342     432 ..     478     565 ..     471     577 .. 0.65

  Alignments for each domain:
  == domain 1    score: 86.7 bits;  conditional E-value: 2.4e-27
    TIGR01421   2 eydylviGGGsGGiasarraaeyGa.kallveekklGGtcvnvGcv.......Pkkvmwya.aslaelledaadyGfksekenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkde.....tvevngke....ytakhiliatGgkpsipeniPGael.gldsdgffaleelPkrvvivGaGyiavelaGvlhglGsk.tdlvirrerv...lrs..fdelisekvveelekaglevhklskvvkvektvegklvitledg.................keiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntn...vegiyalGdvvGkveltPvaiaaGrklserlfe 327
                  +yd+ viG G  G+ +a  aa+    k++l+++ +  G  +n           P  +  +a  + a++++ +   G++  ++    ++e+     +  ++     +++le   v lieGya+f++       t+   g +    ++++++liatG+ p  p niP   +   dsd +  l+ lPk+ vi G+G +a+e+a +++ lG++   l+ir + +   l++  +d+ ++ ++v +l  +g+++ +  +v  +e    ++  + l                     +  ++d+ i a+Gr pntk l+l  +g+k+d+ g i+vd    ++     ++y  Gdv+G+  l+   +a G    + +f+
  MMETSP1061-20121228|23076_1  65 DYDLAVIGAGPVGVQAAIVAAMTAKkKVVLIDAPRASGKLMNEDTNedlsiggPTGLFSKAlRDSAKRIKVSTLRGMNLRED--SIWNEITSSCVELASFNARDIKRQLEYAGVTLIEGYAKFSDYGgshhlTICPTGSTatstISTDKVLIATGSSPFRPVNIPFDGVrVFDSDSINGLNFLPKSLVITGSGIVAIEFAKIFSNLGCDdVTLLIRDNSPknaLKKigLDKDVAATLVADLICSGIKIERACEVGTIEVPSPTNNESYLPPLkiglkarggvddrpetcPQEIKCDAYIAAVGRTPNTKSLNLGAAGIKVDKYGGIMVDSNLRAKgpiDGNVYGAGDVLGRPFLASTGVAQGVATIKNMFG 433
                  6999*********999999988765167889999999999987654111111144444443134455555566666666544..479999999999999999999******************985444456665555445556999******************8876257***********************************9636899999876333664336999*********************999987655544444433333466669999999987667789**********************************876554121569*************99999999877777775 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0026
    TIGR01421 342 vvfshPeigtvGltekeaiekyGk...envkvykssftamyyaltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadf 432
                   v+s Pe++  Gl+  +a  + G    e + +y   +  + ++      +  lklv   + e+v+G+hi G  + el+      +k   t +d 
  MMETSP1061-20121228|23076_1 478 GVWSSPEAAYYGLSVTQAQ-EMGIeagEGIALYAECLRGLVFS-----PNGLLKLVFQKSTEQVIGVHICGEDACELIHYGMELVKTRRTITDV 565
                  5666666666666666663.33431113344554444444433.....45679********************999997555556666666665 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.3   0.0   1.1e-26   1.8e-24       1     322 [.      64     412 ..      64     433 .. 0.78
   2 ?    3.6   0.0     0.031       5.2     410     439 ..     525     554 ..     517     584 .. 0.73

  Alignments for each domain:
  == domain 1    score: 84.3 bits;  conditional E-value: 1.1e-26
    TIGR01438   1 ydydliviGgGsGGlaaakeaakl.gakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaal.lGkalkdskkyGwnveeqvkhdweklskavqdrikslnfsyrvalrekkvkyinayaelvdkd...vikatdk.kkkeeilsakrvliatGlrpkypddieGakelsitsddlfslkkvpGktlvvGasyvalecaGflaalgl.dvtvlvrs....illr..GfdqdcavkvkeylkeqGvkfkeqvlpkkvekvea..............kvlvkftdkdntiee..eydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvp...siyavGdive 322
                  ydydl viG+G+ G+ aa  aa    +kv+l+d+ + + +  +         +G  p  l  +a     k +k s   G n  e     w++++ +  +    +    + +l+   v+ i++ya++ d      ++      +   ++s+++vliatG  p  p +i+ +      sd +  l+  p   ++ G++ va+e a  ++ lg  dvt+l+r       l+  G+d+d+a  +   l   G+k+ +  ++  +e                  k    + d+ +t  +  + d+ + a+Gr++++k+lnl ++g+kv+k    i++d   r++ p   ++y  Gd++ 
  MMETSP1061-20121228|23076_1  64 YDYDLAVIGAGPVGVQAAIVAAMTaKKKVVLIDAPRASGKLMNEDTNE-DLSIGG-PTGLFSKALRdSAKRIKVSTLRGMNLRE--DSIWNEITSSCVELASFNARDIKRQLEYAGVTLIEGYAKFSDYGgshHLTICPTgSTATSTISTDKVLIATGSSPFRPVNIPFDGVRVFDSDSINGLNFLPKSLVITGSGIVAIEFAKIFSNLGCdDVTLLIRDnspkNALKkiGLDKDVAATLVADLICSGIKIERACEVGTIEVPSPtnnesylpplkiglKARGGVDDRPETCPQeiKCDAYIAAVGRTPNTKSLNLGAAGIKVDKYG-GIMVDSNLRAKGPidgNVYGAGDVLG 412
                  8***************9999886516789****976665433322222.223332.444544443214578999999****999..788*****9999887777788999****************9864333555555535667899**********************9999*************999999****************9637*****9622222344459**********************99999887544466788*****88876666677777776551157999***********************875.57788777776543346999999974 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.031
    TIGR01438 410 kvvclkdedervvGlhfvGpnagevtq.Gfa 439
                  k+v + +  e+v+G+h+ G +a+e++  G+ 
  MMETSP1061-20121228|23076_1 525 KLVFQ-KSTEQVIGVHICGEDACELIHyGME 554
                  66654.56789*************9862554 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.4   0.5   9.2e-21   1.6e-18       4     350 ..      66     433 ..      64     448 .. 0.75
   2 !    5.7   0.0    0.0055      0.94     411     457 ..     523     569 ..     484     585 .. 0.85

  Alignments for each domain:
  == domain 1    score: 64.4 bits;  conditional E-value: 9.2e-21
    TIGR01423   4 ydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtg.aqymdtlresagfgweldaesvkanwkal.iaaknkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqm.lkiegielci.ssneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndm...ilr..gfdselrkeltkqlvangidvr......tnenpa...........kveknadgskhvvfes.gkeldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvd...niyaigdvtdrvmltpvainegaavvdtvfa 350
                  ydl vigag  g++a   aa   kk+v ++d  +  g  +        + +g  p  l+     +   +++ s+  g +l  +s+ ++  +  +        di+        +  g+++  g+  + d         +   s+   ++ ++ +l+atgs p   ++i+ +   +  s+    l+  pk  ++ g g +++efa if        +v+l  r++     l+  g+d+++   l  +l + gi++       t e p+           k+ ++a g      e+  +e+  d  + a+gr p ++ l+l  +g+++ + g i vd+  +++ +   n+y  gdv +r +l+   + +g a +  +f+
  MMETSP1061-20121228|23076_1  66 YDLAVIGAGPVGVQAAIVAAMTAKKKVVLIDAPRASGKLMNEDT-NEDLSIGG-PTGLFSKAlRDSAKRIKVSTLRGMNLREDSIWNEITSScVELASFNARDIKRQL-----EYAGVTLIEGYAKFSDYGGSHHLTICPTGSTATSTISTDKVLIATGSSPFRpVNIPFDGVRVfDSDSINGLNFLPKSLVITGSGIVAIEFAKIFSNLG--CDDVTLLIRDNSpknALKkiGLDKDVAATLVADLICSGIKIEracevgTIEVPSptnnesylpplKIGLKARGGVDDRPETcPQEIKCDAYIAAVGRTPNTKSLNLGAAGIKVDKYGGIMVDSNLRAKGPidgNVYGAGDVLGRPFLASTGVAQGVATIKNMFG 433
                  9**********************************998766554.45566765.55555443156778999*************966544321222233334444444.....44566666666666665555444455566888899************99643889988765516777788************************9765..4679999987642223333499****************987533333344433322222222223888888887777666515899************************************998776433369**************************9998 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.0055
    TIGR01423 411 vvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfynti 457
                  + k+v +++  +v+gvh+ g+ + e+i      +k    i+d  n++
  MMETSP1061-20121228|23076_1 523 LLKLVFQKSTEQVIGVHICGEDACELIHYGMELVKTRRTITDVANSL 569
                  56889999999****************99999999999999988876 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   3.4e-07   5.9e-05       1      45 [.      66     111 ..      66     133 .. 0.86
   2 !    5.8   0.0    0.0066       1.1      97     175 ..     205     281 ..     189     321 .. 0.83
   3 !   18.3   0.0     1e-06   0.00017     221     291 ..     351     426 ..     343     432 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 3.4e-07
    TIGR01292   1 ydviiiGaGpaGltaaiYaara.nlktlliegkeaggqltttteve 45 
                  yd+++iGaGp G+ aai aa++ + k++li+  +a g+l+++++ e
  MMETSP1061-20121228|23076_1  66 YDLAVIGAGPVGVQAAIVAAMTaKKKVVLIDAPRASGKLMNEDTNE 111
                  799**************99876155688999999*****9987655 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0066
    TIGR01292  97 keykakaviiAtGaka.rklgikgeeeflgrGvsyCavCDgalfknkevavvGggdsAveealyLskiak.kVtlvhrrdk 175
                  ++ +++ v+iAtG+++ r ++i+    f g  v       g  f  k++++ G+g  A+e a  +s++++ +Vtl+ r ++
  MMETSP1061-20121228|23076_1 205 STISTDKVLIATGSSPfRPVNIP----FDGVRVFDSDSINGLNFLPKSLVITGSGIVAIEFAKIFSNLGCdDVTLLIRDNS 281
                  67778889999998865778888....8888888888889999************************97527999988765 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 1e-06
    TIGR01292 221 eeeelkvdgvFiaiGhepntellkel...leldeegyivvdee..mrTsveG.vfaaGDvrdkslrQvvtaagdGai 291
                    +e+k+d+   a+G +pnt+ l+     +++d+ g i+vd++   +  ++G v+ aGDv  + +  + t +++G++
  MMETSP1061-20121228|23076_1 351 CPQEIKCDAYIAAVGRTPNTKSLNLGaagIKVDKYGGIMVDSNlrAKGPIDGnVYGAGDVLGRPF-LASTGVAQGVA 426
                  5689*****************98744468**************5566679988*******99766.46677777765 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.12        20     152     194 ..      68     110 ..      64     114 .. 0.76
   2 !    8.1   0.0    0.0013      0.22     105     206 ..     210     308 ..     195     322 .. 0.70
   3 !   16.3   0.0   4.1e-06   0.00071     230     283 ..     353     411 ..     346     419 .. 0.85
   4 ?    4.5   0.0     0.016       2.7     374     418 ..     523     566 ..     519     572 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.12
    TIGR03385 152 vvviGgGyiglem.vealkergkevtliersekilnkllDeeia 194
                  ++viG+G +g+   + a+ + +k+v+li+  +    kl++e+ +
  MMETSP1061-20121228|23076_1  68 LAVIGAGPVGVQAaIVAAMTAKKKVVLIDAPRAS-GKLMNEDTN 110
                  68*********86245777788999***987766.777777665 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0013
    TIGR03385 105 DkLilstGAkpkileiegieldavftlrnledaeaikkyldkkkvekvvviGgGyiglemvealkergk.evtlierse...kilnkl.lDeeiakiveeelekkei 206
                  Dk++++tG +p ++        + f   ++ d++ i+ +      +++v+ G+G++++e +  + + g  +vtl+ r++   + l+k+ lD+++a+ +  +l   +i
  MMETSP1061-20121228|23076_1 210 DKVLIATGSSPFRPVN------IPFDGVRVFDSDSINGLN--FLPKSLVITGSGIVAIEFAKIFSNLGCdDVTLLIRDNspkNALKKIgLDKDVAATLVADLICSGI 308
                  7777777777766532......234444555666666543..457899******************99736999988752224555544899998877666655555 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 4.1e-06
    TIGR03385 230 kvyqaDlvilavGvkPnselik..ssqlklgkkGaikvnekfqtsve...niyaiGDva 283
                  +++++D+ i avG  Pn++ ++   +++k++k G i+v+ +++   +   n+y +GDv 
  MMETSP1061-20121228|23076_1 353 QEIKCDAYIAAVGRTPNTKSLNlgAAGIKVDKYGGIMVDSNLRAKGPidgNVYGAGDVL 411
                  57899************997653378****************99744334*******95 PP

  == domain 4    score: 4.5 bits;  conditional E-value: 0.016
    TIGR03385 374 llklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdlt 418
                  llkl+++k+t++++g+ + G++ + + i+     +k++ t+ d++
  MMETSP1061-20121228|23076_1 523 LLKLVFQKSTEQVIGVHICGED-ACELIHYGMELVKTRRTITDVA 566
                  69******************99.7788888888888888887775 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0      0.02       3.4     133     161 ..      65      94 ..      48     108 .. 0.70
   2 !   18.6   0.1   8.2e-07   0.00014     272     425 ..     246     411 ..     237     429 .. 0.68

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.02
    TIGR01316 133 kkkvaviGaGpaGlavaselakkGh.evtv 161
                  +  +aviGaGp G+  a   a +   +v +
  MMETSP1061-20121228|23076_1  65 DYDLAVIGAGPVGVQAAIVAAMTAKkKVVL 94 
                  5678**********9887666554414444 PP

  == domain 2    score: 18.6 bits;  conditional E-value: 8.2e-07
    TIGR01316 272 gkkvvviGgGntavdaartalrlGae.vhvvyrrtredmtareeeikhaeeeGvkfefllqpveviGd.eeGevkavkfekte.lqeerdsgekrk..vpvtdee..vkleadavivaiGqeank..iiaedsslktskrGtivvdedlets..ieG.vfaGGdvi 425
                   k+ v+ G+G +a++ a+    lG + v+++ r    + + ++  +++     +  + ++  +++    e G ++    ++ e  + + + g k    v    e     +++da i a+G+ +n   +    +++k+ k G i+vd +l+++  i+G v+  Gdv+
  MMETSP1061-20121228|23076_1 246 PKSLVITGSGIVAIEFAKIFSNLGCDdVTLLIRDNSPKNALKKIGLDKDVAATLVADLICSGIKIERAcEVGTIEVPSPTNNEsYLPPLKIGLKARggVDDRPETcpQEIKCDAYIAAVGRTPNTksLNLGAAGIKVDKYGGIMVDSNLRAKgpIDGnVYGAGDVL 411
                  578888888888888888888888887888888888888888888888888888888888888774321334433322222220222223332222003222222114799************9722444556**************9987534887688889986 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.6   0.0   9.2e-05     0.016       5      43 ..      66     105 ..      64     145 .. 0.81
   2 !    7.0   0.0    0.0024       0.4      96     176 ..     202     280 ..     166     301 .. 0.85
   3 ?    0.5   0.0      0.22        37     242     282 ..     364     410 ..     350     428 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.2e-05
    TIGR03143   5 ydlvviGgGpaglsaGiyag.raklkvliiekdelGGqit 43 
                  ydl viG+Gp g+ a i a+  ak kv++i+  ++ G++ 
  MMETSP1061-20121228|23076_1  66 YDLAVIGAGPVGVQAAIVAAmTAKKKVVLIDAPRASGKLM 105
                  9***************9987368999*****999999875 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.0024
    TIGR03143  96 takgdlkalavliatGasprklGfeGeeeftGrGvaycatcdGefftGldvlviGgGfaaaeea.vfltkyakkvtvivrep 176
                  ta +++ +  vliatG+sp +   + +  f G  v    + +G  f  + +++ G+G  a e a +f    +  vt+++r++
  MMETSP1061-20121228|23076_1 202 TATSTISTDKVLIATGSSPFR---PVNIPFDGVRVFDSDSINGLNFLPKSLVITGSGIVAIEFAkIFSNLGCDDVTLLIRDN 280
                  788899999*********965...345567777777788889********************883555555689*****986 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.22
    TIGR03143 242 vGyvPsself...kgkvelderGyvvtnedletn..veG.vyaaGdl 282
                  vG +P+++ +   +  +++d+ G ++ + +l+++  ++G vy aGd+
  MMETSP1061-20121228|23076_1 364 VGRTPNTKSLnlgAAGIKVDKYGGIMVDSNLRAKgpIDGnVYGAGDV 410
                  67777776541115689**************8754499889*****8 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   7.5e-08   1.3e-05     152     211 ..      50     109 ..      28     126 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 7.5e-08
    TIGR01372 152 kadteadPdtydkvnahcDvLvvGaGpaGLaaAraAara.GarvilvdeqaeaGGsllsea 211
                   + +e+dPdt  + + + D+ v+GaGp G+ aA  Aa +   +v+l+d  ++ G  +++++
  MMETSP1061-20121228|23076_1  50 DVTSENDPDTNGHPYDY-DLAVIGAGPVGVQAAIVAAMTaKKKVVLIDAPRASGKLMNEDT 109
                  467899*****999987.***************9888651568999998777766555554 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   3.8e-07   6.5e-05      90     277 ..     202     410 ..     199     413 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 3.8e-07
    TIGR02374  90 dagrtlsyDkLilatGsypfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGld..vsvi.elap..llmakqlDqtagrlLqrelekkGltvll..eketveivkesveka..e....rlrfkDG.........ssleadlvvlaaGirPrde.La.aeaGlkvndrrGiivndsmqtsdP...diyavGec 277
                   a  t s Dk+++atGs+pf + ++     gv v+    D d+++      k  ++ G+G++ +e a+ + nlG d  +  i + +p   l +  lD+  ++ L   l   G+++    e  t+e+   + ++        +l+ + G         ++++ d  + a+G  P+++ L   +aG+kv++ +Gi+v+  ++++ P   ++y  G++
  MMETSP1061-20121228|23076_1 202 TATSTISTDKVLIATGSSPFRP-VN-IPFDGVRVF----DSDSINGLNFLPKSLVITGSGIVAIEFAKIFSNLGCDdvTLLIrDNSPknALKKIGLDKDVAATLVADLICSGIKIERacEVGTIEVPSPTNNESylPplkiGLKARGGvddrpetcpQEIKCDAYIAAVGRTPNTKsLNlGAAGIKVDKYGGIMVDSNLRAKGPidgNVYGAGDV 410
                  56778899************65.43.234567776....778888877778888999*****************9843233434455225777789*****************9987558889998776633321121211333333333334444468***************974442479*****************997755578877765 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.6   0.0    0.0052      0.89     536     567 ..      64      96 ..      42     107 .. 0.69
   2 !   13.1   0.0   1.5e-05    0.0026     762     835 ..     354     431 ..     208     456 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.0052
    TIGR03315 536 ekhkvaviGaGPaGlsagyflaraGl.pvtvfe 567
                      +aviGaGP G+ a+ + a     +v +++
  MMETSP1061-20121228|23076_1  64 YDYDLAVIGAGPVGVQAAIVAAMTAKkKVVLID 96 
                  44578************9988765441454444 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.5e-05
    TIGR03315 762 eleadaviaavGeqvdtellk..klgieldekgkvvvneetke.tsvt.nvfviGdakkGPativeaiadgrkaakai 835
                  e++ da iaavG+  +t+ l+  + gi++d++g + v+++ +    ++ nv+ +Gd+   P      +a+g ++ k++
  MMETSP1061-20121228|23076_1 354 EIKCDAYIAAVGRTPNTKSLNlgAAGIKVDKYGGIMVDSNLRAkGPIDgNVYGAGDVLGRPFLASTGVAQGVATIKNM 431
                  799***********99998764489*************996641446449*******999988888888887777766 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.4e-05    0.0041     205     256 ..      58     111 ..      39     161 .. 0.71
   2 ?    4.5   0.0     0.013       2.2     434     491 ..     352     415 ..     343     425 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.4e-05
    TIGR03140 205 eaeeekekydvlvvGgGPagaaaaiyaarkGlk.valv.aeriGGqvkdtvgie 256
                  +++ +   yd+ v+G+GP g+ aai aa    k v l+ a r  G+ ++  + e
  MMETSP1061-20121228|23076_1  58 DTNGHPYDYDLAVIGAGPVGVQAAIVAAMTAKKkVVLIdAPRASGKLMNEDTNE 111
                  4444556799***************99876544133333667777776655555 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.013
    TIGR03140 434 ekkleldGvfvqiGlvpnteflk.da..velnrrGeividergrtsvk..G.ifaaGdvttvpy 491
                   ++++ d     +G  pnt+ l+ +a  +++++ G i++d++ r++ +  G ++ aGdv   p+
  MMETSP1061-20121228|23076_1 352 PQEIKCDAYIAAVGRTPNTKSLNlGAagIKVDKYGGIMVDSNLRAKGPidGnVYGAGDVLGRPF 415
                  5678888888899******998742245************9887765433559*****987776 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.0      0.19        33     146     170 ..      65      90 ..      46     111 .. 0.72
   2 ?    1.1   0.0      0.22        38     195     244 ..     165     221 ..     151     226 .. 0.70
   3 !   13.5   0.0   3.7e-05    0.0063     146     280 ..     247     410 ..     241     425 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.19
    TIGR03169 146 k.slavvGgGaagvElalalrkrlkk 170
                    +lav+G+G  gv  a+  +   kk
  MMETSP1061-20121228|23076_1  65 DyDLAVIGAGPVGVQAAIVAAMTAKK 90 
                  3489**********988776655554 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.22
    TIGR03169 195 klvkrllakrgievlekeevtevede.......alllaegetleadavllatgakap 244
                  + +kr l+ +g++++e  +  +   +        + + + +t+++d+vl+atg+++ 
  MMETSP1061-20121228|23076_1 165 RDIKRQLEYAGVTLIEGYAKFSDYGGshhlticPTGSTATSTISTDKVLIATGSSPF 221
                  5678888888888888755433332334443332233677899**********9985 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 3.7e-05
    TIGR03169 146 kslavvGgGaagvElalalrkrlkkrglkaevsla....seakllqa..lsakvrklvkrllakrgievlekeevtevede.........................alllaegetleadavllatgaka...pawLaesglsldedGflavkktLqsls..hpevFaaGDc 280
                  ksl++ G+G+ ++E a    k + + g + +v+l     s ++ l++  l + v +++ + l  +gi++ ++ ev  +e                             +  + +++++da ++a g  +   +  L + g+++d+ G + v+++L+ ++  + +v++aGD+
  MMETSP1061-20121228|23076_1 247 KSLVITGSGIVAIEFA----KIFSNLGCD-DVTLLirdnSPKNALKKigLDKDVAATLVADLICSGIKIERACEVGTIEVPsptnnesylpplkiglkarggvddrPET--CPQEIKCDAYIAAVGRTPntkSLNLGAAGIKVDKYGGIMVDSNLRAKGpiDGNVYGAGDV 410
                  5677888888777765....566666666.5555544432233333211445666666666667777777777777776445677777777788877777766653333..47889999999998876611155799*******************97644789******8 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   5.9e-05      0.01     382     418 ..      68     105 ..      62     160 .. 0.79
   2 ?    0.6   0.0      0.17        29     463     493 ..     208     238 ..     197     271 .. 0.80
   3 ?   -2.2   0.0       1.2     2e+02     209     239 ..     533     566 ..     530     597 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5.9e-05
    TIGR03997 382 vlvvGgGPaGleaaataarrGh.rvtllereeelGGqv 418
                  + v+G+GP G++aa+ aa+    +v+l++  ++ G  +
  MMETSP1061-20121228|23076_1  68 LAVIGAGPVGVQAAIVAAMTAKkKVVLIDAPRASGKLM 105
                  679***************98752688888777666544 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.17
    TIGR03997 463 kPDavvlatGsrparpdlagadservvtvre 493
                  + D v++atGs p rp    +d+ rv++   
  MMETSP1061-20121228|23076_1 208 STDKVLIATGSSPFRPVNIPFDGVRVFDSDS 238
                  5699*********999777778888887654 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 1.2
    TIGR03997 209 drvlGvRlcgde...lveGGltlaeaveiaalle 239
                  + v+Gv +cg++   l++ G++l +++ + + ++
  MMETSP1061-20121228|23076_1 533 EQVIGVHICGEDaceLIHYGMELVKTRRTITDVA 566
                  6799999999962224568888888877766665 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.9   1.9e-05    0.0033       2      35 ..      69     103 ..      68     106 .. 0.90
   2 ?   -0.7   0.0      0.62   1.1e+02     144     160 ..     203     219 ..     193     231 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.9e-05
    TIGR00275   2 iiiGgGaaGlmaAitaae.egakVlllEknkkigk 35 
                  ++iG+G+ G+ aAi aa  +++kV+l+++ +  gk
  MMETSP1061-20121228|23076_1  69 AVIGAGPVGVQAAIVAAMtAKKKVVLIDAPRASGK 103
                  7***************99899*******9877765 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.62
    TIGR00275 144 ekkeleakkvilatGgk 160
                   +++++++kv++atG++
  MMETSP1061-20121228|23076_1 203 ATSTISTDKVLIATGSS 219
                  567899*********95 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.2   0.00063      0.11       1      27 [.      67      93 ..      67     101 .. 0.77
   2 ?    1.8   0.0      0.11        18     107     192 ..     202     287 ..     189     311 .. 0.85
   3 ?   -0.9   0.0      0.73   1.2e+02     234     286 ..     353     408 ..     345     413 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00063
    TIGR04018  1 dviiiGaGPiGlaaaieakkaglsyli 27
                 d+ +iGaGP+G+ aai a  +  + ++
  MMETSP1061-20121228|23076_1 67 DLAVIGAGPVGVQAAIVAAMTAKKKVV 93
                 789************987765544444 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.11
    TIGR04018 107 tekeeyeakkvvvatGyydipnllnvpGedlpkvshyykeahpyvkqkvvvvGgknsavdaalelyrkgae.vtlvvrgeelsekvk 192
                  t ++++++ kv++atG     + +n+p + +        +  +++ +++v+ G+   a++ a    + g + vtl++r+++ ++ +k
  MMETSP1061-20121228|23076_1 202 TATSTISTDKVLIATGSS-PFRPVNIPFDGVRVFDSDSINGLNFLPKSLVITGSGIVAIEFAKIFSNLGCDdVTLLIRDNSPKNALK 287
                  5677889999999*9974.567899999988888888889999*****************9988888887559****9999888877 PP

  == domain 3    score: -0.9 bits;  conditional E-value: 0.73
    TIGR04018 234 eeiendfvlaltGyrpdlelle..klgveleedekipvydeetmEtnveg.lylaG 286
                  +ei++d  +a +G +p+++ l+  ++g+++++  +i v ++      ++g +y aG
  MMETSP1061-20121228|23076_1 353 QEIKCDAYIAAVGRTPNTKSLNlgAAGIKVDKYGGIMVDSNLRAKGPIDGnVYGAG 408
                  6899*************998753378999998877766666666666653356555 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   0.0     0.011       1.9     138     170 ..      62      94 ..      37     107 .. 0.72
   2 !    6.5   0.0    0.0032      0.55     383     461 ..     353     431 ..     341     435 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.011
    TIGR01318 138 kktgkrvaviGaGpaGlacadvlaraGvkvvvf 170
                  ++ +  +aviGaGp G+  a v a +  k vv 
  MMETSP1061-20121228|23076_1  62 HPYDYDLAVIGAGPVGVQAAIVAAMTAKKKVVL 94 
                  5778889***********998887766555544 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0032
    TIGR01318 383 avleadvviiafGfephame.wlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeGrkaaegi 461
                  ++++ d+ i a G +p++    l + gik+d+ G i+++++   a    + +++  Gd+     l  t va+G  + +++
  MMETSP1061-20121228|23076_1 353 QEIKCDAYIAAVGRTPNTKSlNLGAAGIKVDKYGGIMVDSN-LRAKGPIDGNVYGAGDVLGRPFLASTGVAQGVATIKNM 431
                  67899**********9877626999*************943.33445567899*****9999999999999998877766 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.5   6.8e-05     0.012       1      36 [.      66     102 ..      66     106 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.8e-05
    TIGR02032   1 yDvvvvGaGpaGssaAlrlakkG.lrVlllekkelpr 36 
                  yD+ v+GaGp G  aA  +a +   +V+l++  ++++
  MMETSP1061-20121228|23076_1  66 YDLAVIGAGPVGVQAAIVAAMTAkKKVVLIDAPRASG 102
                  9**************9998876525899999987766 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00017     0.029       1      36 [.      67     102 ..      67     155 .. 0.85
   2 ?   -2.2   0.0       1.8     3e+02       2      36 ..     249     283 ..     248     299 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00017
    TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalveakaaek 36 
                  d++++G+G+vG   A+  a  a++kv l++a +a+ 
  MMETSP1061-20121228|23076_1  67 DLAVIGAGPVGVQAAIVAAMTAKKKVVLIDAPRASG 102
                  899*************9998889*******976655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1.8
    TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaaek 36 
                  +vI G+G+v   +A  +++ +  +v+l+ + +++k
  MMETSP1061-20121228|23076_1 249 LVITGSGIVAIEFAKIFSNLGCDDVTLLIRDNSPK 283
                  58999999999999999888844444444444443 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   0.00018     0.032     163     194 ..      66      97 ..      56     107 .. 0.88
   2 ?   -3.9   0.0       6.8   1.2e+03     164     211 ..     248     295 ..     244     298 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00018
    TIGR00692 163 esvlvsGaGpiGllavavakaaGasqvivsdk 194
                   + +v+GaGp+G+ a+ va  +  ++v+++d 
  MMETSP1061-20121228|23076_1  66 YDLAVIGAGPVGVQAAIVAAMTAKKKVVLIDA 97 
                  5789************************9996 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 6.8
    TIGR00692 164 svlvsGaGpiGllavavakaaGasqvivsdkneyrlelakkvGatrvv 211
                  s +++G+G + +  + +  + G  +v +  +++  ++  kk+G ++ v
  MMETSP1061-20121228|23076_1 248 SLVITGSGIVAIEFAKIFSNLGCDDVTLLIRDNSPKNALKKIGLDKDV 295
                  667888887777777777788888887777777777777888877665 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.4    0.0027      0.47       1      30 [.      66      96 ..      66     103 .. 0.75
   2 ?    1.1   0.0       0.2        35       2      38 ..     248     285 ..     247     287 .. 0.88

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0027
    TIGR03364  1 tdvvvvGaGivGlahAlaaarrG.lkVtvie 30
                 +d++v+GaG vG+  A+ aa    +kV++i+
  MMETSP1061-20121228|23076_1 66 YDLAVIGAGPVGVQAAIVAAMTAkKKVVLID 96
                 79***********999877665515677776 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.2
    TIGR03364   2 dvvvvGaGivGlahAlaaarrGl.kVtvierssraaGA 38 
                  ++v+ G+Giv + +A   ++ G   Vt++ r+++++ A
  MMETSP1061-20121228|23076_1 248 SLVITGSGIVAIEFAKIFSNLGCdDVTLLIRDNSPKNA 285
                  689*************9999997369999999998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (611 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      157  (0.038274); expected 82.0 (0.02)
Passed Vit filter:                        51  (0.012433); expected 4.1 (0.001)
Passed Fwd filter:                        24  (0.0058508); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              24  [number of targets reported over threshold]
# CPU time: 0.69u 0.16s 00:00:00.85 Elapsed: 00:00:00.52
# Mc/sec: 1550.87
//
Query:       MMETSP1061-20121228|23092_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   25.8   0.0    1.6e-06   25.4   0.0    1.1  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.9e-10   1.6e-06     159     195 ..     309     345 ..     295     346 .] 0.93

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.9e-10
    TIGR00601 159 etveeimemGyereeverAlRAafnnPdRAveYLltG 195
                  e+v+++ +mG+e ++v+ Al A+ nn +RA + Ll+G
  MMETSP1061-20121228|23092_1 309 EAVTQLTSMGFEEDRVKEALQASDNNIERAANILLMG 345
                  789*********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1902.84
//
Query:       MMETSP1061-20121228|23106_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 2034.83
//
Query:       MMETSP1061-20121228|23116_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    3.8  10.6        3.9    3.7   7.3    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   7.3   0.00094       3.9      57     101 ..       7      50 ..       2      52 .] 0.68

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.00094
    TIGR03319  57 keevkklreelekelkerrkelqklekrlkqkeekldrkkeklek 101
                   e++kk  +  ek l+ +++ ++kl+ +lk kee+l++k+ k+e+
  MMETSP1061-20121228|23116_1   7 AEKAKKSNARREKMLRMEQERVAKLKAKLKAKEERLQTKN-KMEE 50 
                  4666677777777888888888888888888888888777.4443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       354  (0.0862994); expected 82.0 (0.02)
Passed bias filter:                      195  (0.0475378); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1061-20121228|23115_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.13s 00:00:00.20 Elapsed: 00:00:00.24
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|23123_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-95  318.2   0.0    1.2e-95  318.0   0.0    1.0  1  TIGR01123 ilvE_II: branched-chain amino acid aminotransferase
    2.6e-28   96.9   0.0    3.1e-28   96.6   0.0    1.1  1  TIGR01122 ilvE_I: branched-chain amino acid aminotransferase
    1.4e-07   28.8   0.0    1.9e-05   21.8   0.0    2.1  2  TIGR01121 D_amino_aminoT: D-amino-acid transaminase


Domain annotation for each model (and alignments):
>> TIGR01123  ilvE_II: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  318.0   0.0   8.6e-99   1.2e-95       1     313 []     100     421 .]     100     421 .] 0.93

  Alignments for each domain:
  == domain 1    score: 318.0 bits;  conditional E-value: 8.6e-99
    TIGR01123   1 WdeaelaseaeleldegsavlhYgqevfeGlkayRt.adG.killfRpdanakRlrrsaerlllP..eleeelflealkqlvkadkdwvpkakseasLYlRPfliatednlGvkaakeylflvlasPvGaYfkgglapvsifveteyvRaapkGtGavkvgGnYaasllaqkkaaeqglddvvyldpvekkkieevGaanifl..itkdg...elvttpl.sesiLegvtresllelakdlg.leveereiaidelkaaveaGei..vfacGtaavitPvgelkiegkevevkseevGevtkklrdeltdiqyGkledkegWivev 313
                  W ++++a+ ++l+++++++ lhYg ++feG+kayR+ +dG +i lfRp++n++Rl +s +rl++P  + ++e +++ + +lvk+dkdw+p+ + + sLY+RP++iat + lG +a  ++l++v++sPvG+Y+k+g +p++   +t +vRa p+GtG+vkvgGnYaa++++ ++aa++g++++++l   ++ ++ evGa+n+f+  i+k+    elvt +l  ++iL+gvtr+s+lela+ +g + v+er+i+++e+++a+e+  +  +f++Gtaav+tP++ ++ +gke+e+ +   G++t+++ de+++iqy ++e++ gWive+
  MMETSP1061-20121228|23123_1 100 WGAPKIAPFHDLKIHPAATSLHYGLQCFEGMKAYRSsEDGeSIHLFRPNKNMERLTTSMDRLQMPgaDFDNEELIKLIGELVKIDKDWIPSGE-GYSLYIRPTVIATHKFLGLAAPDSILLYVICSPVGPYYKTGFDPIKLTADTSCVRAWPGGTGNVKVGGNYAATMKPAAEAAAKGYSQILWLFGEND-EVTEVGAMNFFVywINKETnrpELVTASLdRGDILPGVTRDSILELARAWGdFDVSERNITMNEIREASEENRLleAFGAGTAAVVTPISCIRYKGKEIEIPAV--GNLTQRVWDEVVGIQYRTMEAPPGWIVEL 421
                  8999*******************************73577579**********************4446799******************766.9******************************************************************************************99887.9*********97446776666678887763589****************7659*****************999889***********************99876..***************************86 PP

>> TIGR01122  ilvE_I: branched-chain amino acid aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.6   0.0   2.3e-31   3.1e-28       5     295 ..     104     418 ..     100     421 .] 0.81

  Alignments for each domain:
  == domain 1    score: 96.6 bits;  conditional E-value: 2.3e-31
    TIGR01122   5 elvdvedakvhvlthalhYGtgvfeGiRaYetdk...glaifrlkehveRlydsakilrle.ipyskeelvevtkevlrknn..l.....ksaYiRplvyvGaedlglkpkvdlkveviiaawewgaylgeealekGikvkvssfrraavnsiptkakaagnYlnsllaksealraGydeailL.deeGyvaeGsGenifiv.kdg.....vlltPpvs.esiLkgitrdaviklakelg.ievkeerisreelytaD......evfltGtaaevtPirev..DgrkigegkrGpvtkklqeaffdlvegktekkeewl 295
                  ++ +++d k+h    +lhYG   feG++aY++++      +fr ++ +eRl +s   l+++  ++ +eel++ + e+++ ++  +      s YiRp v+  ++ lgl +    ++ + ++  ++g y+ +      +++ +s +r       + ++k++gnY  ++    ea ++Gy   + L  e+  v+e    n+f+   +      +l+t ++    iL g+trd++++la+  g ++v e++i+ +e+  a       e+f +Gtaa vtPi  +   g++i    +G++t+++ ++   + + ++e+  +w+
  MMETSP1061-20121228|23123_1 104 KIAPFHDLKIHPAATSLHYGLQCFEGMKAYRSSEdgeSIHLFRPNKNMERLTTSMDRLQMPgADFDNEELIKLIGELVKIDKdwIpsgegYSLYIRPTVIATHKFLGLAA--PDSILLYVICSPVGPYYKTGFDPIKLTADTSCVRAWP--GGTGNVKVGGNYAATMKPAAEAAAKGYSQILWLfGENDEVTEVGAMNFFVYwINKetnrpELVTASLDrGDILPGVTRDSILELARAWGdFDVSERNITMNEIREASeenrllEAFGAGTAAVVTPISCIryKGKEIEIPAVGNLTQRVWDEVVGIQYRTMEAPPGWI 418
                  678999************************99875434567999***************975799*******999999965423322221568***************99..3478899999*******98544445666666665544..45689************************9976378899***99999998532440111245555553136899************88769*************99733444459************98844689*****************9999999888877776 PP

>> TIGR01121  D_amino_aminoT: D-amino-acid transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.0   0.0    0.0019       2.6      39      89 ..     143     196 ..     109     221 .. 0.75
   2 !   21.8   0.0   1.4e-08   1.9e-05     170     268 ..     286     400 ..     262     405 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.0 bits;  conditional E-value: 0.0019
    TIGR01121  39 klftleehidrlyasaakirld.lpyskeelkellkelveknn..lneGavylq 89 
                  +lf  +  ++rl  s +++++    + +eel +l+ elv++++  +  G+ y  
  MMETSP1061-20121228|23123_1 143 HLFRPNKNMERLTTSMDRLQMPgADFDNEELIKLIGELVKIDKdwIPSGEGYSL 196
                  69999***************96378*************9865422566665555 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 1.4e-08
    TIGR01121 170 rdelvtegsssn..vyaikdgv....lythpann.lilnGitrkvilklaee.nglpvkeealtkeelkeade......vfvssttaevtPv..veidGqqigdGkvGpltkklq 268
                   ++ vte  + n  vy i +++    l t + ++  il G+tr+ il+la+   +++v+e+++t +e++ea e       f + t+a vtP+  ++  G++i   +vG+lt+++ 
  MMETSP1061-20121228|23123_1 286 ENDEVTEVGAMNffVYWINKETnrpeLVTASLDRgDILPGVTRDSILELARAwGDFDVSERNITMNEIREASEenrlleAFGAGTAAVVTPIscIRYKGKEIEIPAVGNLTQRVW 400
                  578899999998556667655423337777777636**************87357**************997534333378899*******9445568*************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1587.64
//
Query:       MMETSP1061-20121228|23144_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 2401.35
//
Query:       MMETSP1061-20121228|23185_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 401.71
//
Query:       MMETSP1061-20121228|23201_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 634.80
//
Query:       MMETSP1061-20121228|23186_1  [L=1266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-16   58.4   0.3    1.4e-16   58.4   0.2    1.8  2  TIGR00417 speE: spermidine synthase
     0.0039   15.4   0.0      0.013   13.7   0.0    1.8  1  TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.2     7e-20   1.4e-16      24     186 ..     471     637 ..     457     693 .. 0.88
   2 ?   -2.0   0.1      0.18   3.6e+02     215     266 ..    1027    1076 ..     992    1079 .. 0.65

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 7e-20
    TIGR00417  24 ksefqdvlifete.efGkvlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpklsgalddervdlkidDGvkfl....rdtekkfDviivDstdPvGpaetlfekefyelvkkalnedGvivaqs 186
                  k+++qd+  +++  +  + + lD++vq+  +  + yhe+ ah +    ++ k+v+ iGGGD   l e +k+   e ++  eiD++v++ s ky+ + s  ++d+rv+    D  k l    +d+   fD ++vD ++ v   +   e + ++ ++  ln+ Gv+v+  
  MMETSP1061-20121228|23186_1 471 KTHYQDLNFMRKGiTDDTCMDLDNIVQICSNYRPQYHEFSAHAAGRFVKDVKRVIFIGGGDSMLLYEALKYPDLELVVGLEIDQTVVRKSFKYFHT-SPYFEDDRVEWWFGDATKSLlllpEDYWGSFDLVLVDLSETVMSFSVTAELDVFDALSLLLNPVGVMVKNE 637
                  789999998876515568899************************************************************************975.689*************99874455677899*************999999******************9864 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.18
    TIGR00417  215 aaiPtypsgllsfivasknklsnleveeerikeeaedlktkyynkeihkaaf 266 
                   a   ty  g++s   a      + e+ e+rik+  ++  ++   ++ih a+f
  MMETSP1061-20121228|23186_1 1027 ADGKTYEYGVVSTFNAKV--AYDYEKMEKRIKDRLSESSVNVELRNIHGAMF 1076
                   445688888876444433..33456666788888888888888888888887 PP

>> TIGR03330  SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   6.3e-06     0.013       8     105 ..     732     825 ..     726     831 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.3e-06
    TIGR03330   8 lvdlygvdeekledeelieevlleaakaagatlvevafhkfspqGvsgvvvlaESHisiHTwpEkgyaavDvftCgdtvdpekavellkealkakkve 105
                  +v++++ ++  +e +e i+++++++a++ g t ++  +    ++   gvvv++E  is    p++ y+ +Dv + g  ++ ++  + l+ea+ ++ v+
  MMETSP1061-20121228|23186_1 732 IVEVMNAENCSVELNESITDIVKTVAEKEGFTPISEPVFD--NN--VGVVVMKEGFISARIVPDEKYVGFDVNLWGMSSKIKSLRKALSEAVGSSDVS 825
                  688899999999999*****************99988754..33..589***************************9999888888888888777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.53
# Mc/sec: 3152.80
//
Query:       MMETSP1061-20121228|23206_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.4   0.2      0.013   13.0   0.1    1.0  1  TIGR01912 TatC-Arch: Sec-independent protein translocase TatC


Domain annotation for each model (and alignments):
>> TIGR01912  TatC-Arch: Sec-independent protein translocase TatC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   3.2e-06     0.013      67     121 ..      17      70 ..      14      71 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 3.2e-06
    TIGR01912  67 kvalliglLlalPvlvyelykfikpalkkrerrqvrlllviavgLfllGalfaff 121
                  k+++  gl++++P+++++++ ++ +  k ++++ +    ++a  + + G  +a++
  MMETSP1061-20121228|23206_1  17 KLGIATGLMFTFPFIAFYVVLALCKDKKNPDNW-AGAAAIVATNMVVAGYCYAAY 70 
                  677889**************9998877766666.678899999*******99998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 557.95
//
Query:       MMETSP1061-20121228|23210_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 539.43
//
Query:       MMETSP1061-20121228|23199_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0056   14.2  19.4     0.0034   14.9   1.9    3.1  4  TIGR03340 phn_DUF6: phosphonate utilization associated putative membrane protein


Domain annotation for each model (and alignments):
>> TIGR03340  phn_DUF6: phosphonate utilization associated putative membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0     0.078   3.2e+02     149     194 ..      64     111 ..      57     127 .. 0.55
   2 !   14.9   1.9   8.4e-07    0.0034      88     175 ..     174     268 ..     147     294 .. 0.71
   3 ?   -1.5   0.0     0.081   3.3e+02     109     130 ..     313     334 ..     309     343 .. 0.82
   4 !    6.4   3.8   0.00033       1.3      88     130 ..     342     391 ..     322     397 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.078
    TIGR03340 149 alvaalitaiYsviDkavalevaasss..allylaiqflaaglvllll 194
                  al+ al+ a Y v  k  + +++   +  +l  +a  f +  lv+l++
  MMETSP1061-20121228|23199_1  64 ALLCALAYALYNVFIKKGSASIHPILGgvVLEIVAALFGSLVLVVLMV 111
                  788888888888876644444443332113334444444443333333 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 8.4e-07
    TIGR03340  88 dvglvYPlaRsl.PvlvaiaatlllgeeLsal.aWlGillivlGllvlglskkaqsrrkalk.....walvaalitaiYsviDkavalevaasss 175
                  +v+   P++ +   ++ a+ ++++ +e+L+ +  WlG+ l+ lG+ +++     + +  +        al  a++ a Y ++ k ++++++  ++
  MMETSP1061-20121228|23199_1 174 PVTQSIPIIVGGsVLFGAVLSSVFCNETLEWNhGWLGVGLVFLGICLVAAPSGDDNATTVPLavwvgLALCCAIAYALYNISIKQASNTIHPIVG 268
                  4444455544431444467778899999996526**********9888776555444443223656689*************9977766655443 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.081
    TIGR03340 109 lllgeeLsalaWlGillivlGl 130
                   +l ++ s+l W Gi+   +G+
  MMETSP1061-20121228|23199_1 313 HILYYDSSGLMWSGIAGLAVGM 334
                  5677889999*******99997 PP

  == domain 4    score: 6.4 bits;  conditional E-value: 0.00033
    TIGR03340  88 dvglvYPlaRslPvlv.......aiaatlllgeeLsalaWlGillivlGl 130
                    g+  P  Rs+P+++        i + lllge L +  W+G+ l vlG+
  MMETSP1061-20121228|23199_1 342 VSGMGVPATRSIPIVIggsvalgSIIGILLLGEVLDQRGWVGVCLLVLGI 391
                  556778999999999822222222456789******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2025.53
//
Query:       MMETSP1061-20121228|23217_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.28
# Mc/sec: 240.41
//
Query:       MMETSP1061-20121228|23207_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2983.90
//
Query:       MMETSP1061-20121228|23187_1  [L=1723]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1723 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.66u 0.15s 00:00:00.81 Elapsed: 00:00:00.49
# Mc/sec: 4641.17
//
Query:       MMETSP1061-20121228|23225_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-15   54.6   0.1    3.1e-15   54.4   0.0    1.1  1  TIGR00324 endA: tRNA intron endonuclease


Domain annotation for each model (and alignments):
>> TIGR00324  endA: tRNA intron endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.4   0.0   7.5e-19   3.1e-15      69     164 ..       3     101 ..       1     111 [. 0.92

  Alignments for each domain:
  == domain 1    score: 54.4 bits;  conditional E-value: 7.5e-19
    TIGR00324  69 eelvelaakykderslvrkY.....lvYkdlrerGyvvktGikfGadfllYkrgplrdkeHseylvkvldedesidlidlssivRvatgvkKklvlayvee 164
                  e++v+++ k+k+++s+ +++     +v  +++e+Gy v++G++fGa+ +lY   p  d  Hs ++++v  +de id  ++   vR     +K+lvla v+ 
  MMETSP1061-20121228|23225_1   3 EQIVKRKEKKKNNHSMLSTWeekvdFVREHYQEKGYRVHSGLQFGAELVLYADRP--DLVHSDFCIHVTRDDELIDWREMQTLVRSMPDLHKTLVLANVKG 101
                  6799999999999999998855555799*************************99..****************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 943.72
//
Query:       MMETSP1061-20121228|23276_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|23280_1  [L=455]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (455 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.36
# Mc/sec: 1668.20
//
Query:       MMETSP1061-20121228|23286_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.46
# Mc/sec: 1552.31
//
Query:       MMETSP1061-20121228|23293_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 1039.41
//
Query:       MMETSP1061-20121228|23308_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.58    5.5  11.4       0.52    5.7   7.9    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        1.6    4.8   8.4        1.6    4.8   5.8    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        1.8    4.9   7.6        2.1    4.7   5.2    1.0  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   7.9   0.00038      0.52     975    1007 ..      43      74 ..       4      84 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00038
    TIGR00927  975 dseeeeeeeeeeeeeeeeeeeeeeeeeeneepl 1007
                   +s++e+e+ ee      ++ee++eeeee+eep+
  MMETSP1061-20121228|23308_1   43 NSQDEDEDAEE-AVPATNDEEQQEEEEEEEEPV 74  
                   23333333333.111222233333333334554 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   5.8    0.0012       1.6     332     378 ..      33      75 ..       3      87 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0012
    TIGR02442 332 eakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeae 378
                  +akp++ ke++s    ++e++++ee  p ++de++++e+ee+ee+ +
  MMETSP1061-20121228|23308_1  33 TAKPKPAKEENS----QDEDEDAEEAVPATNDEEQQEEEEEEEEPVK 75 
                  222222222222....2222222233344444444444444333333 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.2    0.0016       2.1     206     257 ..      41      72 ..      28      85 .. 0.40

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0016
    TIGR01651 206 deesed.eedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeee 257
                  +e+s+d +ed+++  p  +++e+                     +eee+ eee
  MMETSP1061-20121228|23308_1  41 EENSQDeDEDAEEAVPATNDEEQ---------------------QEEEEEEEE 72 
                  22222202222333333322222.....................222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.56
# Mc/sec: 213.04
//
Query:       MMETSP1061-20121228|23325_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.40
# Mc/sec: 230.98
//
Query:       MMETSP1061-20121228|23327_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 384.97
//
Query:       MMETSP1061-20121228|23326_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-27   94.6   0.0    1.5e-23   81.4   0.0    2.2  2  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    3.4e-16   57.3   0.0    1.1e-13   49.1   0.0    2.1  2  TIGR00742 yjbN: tRNA dihydrouridine synthase A
     0.0065   13.7   0.0      0.012   12.8   0.0    1.3  1  TIGR03572 WbuZ: glycosyl amidation-associated protein WbuZ


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0   2.8e-05     0.039      11      71 ..      95     156 ..      92     166 .. 0.80
   2 !   81.4   0.0   1.1e-26   1.5e-23      59     298 ..     190     446 ..     174     467 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.8e-05
    TIGR00737  11 vlaPlagvtdlafRrlvkey.eaglvvsEmvssealveksektkklleiaedekpisvQlag 71 
                  v+aP+   +d++fR   +e  +  l+++ m+ +++ + ++   k  l+  e + ++    + 
  MMETSP1061-20121228|23326_1  95 VMAPMVAASDYPFRVFLREHcGVDLTFTQMLLAKKFMADPVWRKAHLDLYETMDSTRTDSLS 156
                  79************9888762699**********9999987777777777777666555555 PP

  == domain 2    score: 81.4 bits;  conditional E-value: 1.1e-26
    TIGR00737  59 aedekpisvQlagsdpdvmaeaAk.iae..elgadiiDlNmGCPvkkitkkgaGsall.kepeliekivkavveave..vPVTvKiRiGwdeehinveeaariaedaGaqavalHgRTraqlyeGeanwdiiarvkqavk........iPVignGDitspedAkamLeetgadgvligRgalGkPwlf.keieqylttgk..lkkaptlaek.laailrhlqlladyygeekglreaRKhvawYlkglkk..kaalreel 298
                  +++  p  vQlag d d+++++A  i e  + + d iDlN+GCP +   k + G+ l+ +++el++ i++ + +     v V  KiR+ +d++++   e   ++ d+G+  +++HgRT     + +a+   i rv+ av+        +PVi+nG +++ +d + +Le tga + + + + l +P lf ke  + + t +   ++++++a++ l++++r    l    g++  ++++R h+  +l+   +  ++ lr +l
  MMETSP1061-20121228|23326_1 190 RQQSAPLMVQLAGDDVDTVVQTALmIYEhtDGKLDGIDLNCGCPQQIASKGNYGAFLMeRDSELVNDILAGLRKNLPseVSVSAKIRLPLDDDTL--RERIPRLLDTGIDFLTVHGRTLKE-NKAKAKGAHIDRVRLAVEiahkldpsFPVIANGGMENYDDIQSILESTGASAAMSSEALLETPDLFmKESMDNIGTPEerFQRQVSFAKNyLDVCTRVGPPLPGVLGKSGSFNIVRGHLFKFLHRYINsdHQDLRDKL 446
                  56778999***************9665511456789*******************998367899******99998755599999*******9975..566666779************865.58889999999999888878899999*************************************77624455666555411467888876537999999999********9******9999999876441134566655 PP

>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0     0.001       1.4       5      41 ..      96     132 ..      93     159 .. 0.87
   2 !   49.1   0.0   7.9e-17   1.1e-13      52     237 ..     191     378 ..     174     415 .. 0.69

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.001
    TIGR00742   5 vaPmlditdrhfryllrllskkvllytemvtakaiih 41 
                  +aPm+  +d  fr +lr      l +t+m+ ak  + 
  MMETSP1061-20121228|23326_1  96 MAPMVAASDYPFRVFLREHCGVDLTFTQMLLAKKFMA 132
                  69****************************9998765 PP

  == domain 2    score: 49.1 bits;  conditional E-value: 7.9e-17
    TIGR00742  52 eeekPvalqlggsdpedlakcak.laee..fgydeinlnvGcPsdrvqngnfGaclman.adlvadivkamkeaveiPvtv..ktriGideldsyeelvdfveivsdkGikefivharkawlkGlsPkenreiPplr..yervyqlkkdfpnllieinGGiksleeikkhlsfvds..vmvGreayenPyllaavd 237
                  ++  P+ +ql+g+d +++ ++a  + e+     d i+ln GcP +   +gn+Ga lm + ++lv di+  ++++    v+v  k r+ +d+    + l + +  + d+Gi+ ++vh r    +    k   +i ++r   e  ++l   fp   +  nGG+++ ++i+  l+   +   m   +  e P l+ + +
  MMETSP1061-20121228|23326_1 191 QQSAPLMVQLAGDDVDTVVQTALmIYEHtdGKLDGIDLNCGCPQQIASKGNYGAFLMERdSELVNDILAGLRKNLPSEVSVsaKIRLPLDD----DTLRERIPRLLDTGIDFLTVHGRTLKENKAKAK-GAHIDRVRlaVEIAHKLDPSFP---VIANGGMENYDDIQSILESTGAsaAMSSEALLETPDLFMKES 378
                  4678***********999887751555543579************************85379************87776661155555554....5789999999*************7554444444.3455554400455555555555...567***********9998764311444444455555554433 PP

>> TIGR03572  WbuZ: glycosyl amidation-associated protein WbuZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   8.6e-06     0.012     197     228 ..     334     365 ..     313     368 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.6e-06
    TIGR03572 197 kiPvialGGagslddlvevvleagasavaaas 228
                  + Pvia+GG+++ dd++ +++++gasa+  ++
  MMETSP1061-20121228|23326_1 334 SFPVIANGGMENYDDIQSILESTGASAAMSSE 365
                  68************************987766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.31
# Mc/sec: 2350.26
//
Query:       MMETSP1061-20121228|23317_1  [L=1041]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   10.2   0.0       0.66    5.5   0.0    2.0  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0    0.0014       5.8      93     112 ..     354     374 ..     341     383 .. 0.78
   2 ?    5.5   0.0   0.00016      0.66     148     186 ..     896     934 ..     882     940 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0014
    TIGR03903  93 aaahda.GvvhRDLkPqnimv 112
                     h++  ++h DLkP+n+++
  MMETSP1061-20121228|23317_1 354 DFLHRKcQIIHTDLKPENVLL 374
                  555665259**********97 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.00016
    TIGR03903 148 evlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                  e + + +Y aPe L g    + +D+++ G + +e LtG+
  MMETSP1061-20121228|23317_1 896 EDIQTRQYRAPEVLIGSKYNTSADMWSLGCMTFELLTGD 934
                  778899********************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1041 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.59u 0.13s 00:00:00.72 Elapsed: 00:00:00.41
# Mc/sec: 3351.24
//
Query:       MMETSP1061-20121228|23338_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 1281.39
//
Query:       MMETSP1061-20121228|23340_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-07   27.2   0.0    1.8e-06   25.8   0.0    1.6  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    5.4e-05   20.5   2.8     0.0034   14.6   0.4    2.5  2  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00017   18.8   0.8     0.0022   15.2   0.5    2.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0008   16.6   0.0     0.0012   16.0   0.0    1.2  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
  ------ inclusion threshold ------
      0.029   11.9   0.0      0.048   11.2   0.0    1.3  1  TIGR00740 TIGR00740: putative methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.2e-09   1.8e-06      18     133 ..     267     420 ..     263     429 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2.2e-09
    TIGR02072  18 eiakkLlellkekr...kfepakvLdiGcGtGiltrallkrf......pqae..lialDiseemleqakkkls.....................nvqficgdieklplekks......fDlivSnlalQWlddlsevlaelarvlkpgGllafs 133
                   i++k  e+l++     ++  ++vLd+GcGtG+  r+l+k +      +q++  l+ +D s +ml +a++                         +  +  d+e++ l +        f+liv++ ++  + +l+++++ l  +++  Gll+f+
  MMETSP1061-20121228|23340_1 267 IIGSKVAEILEKDDdetNIVVRNVLDAGCGTGLAGRELRKVIddregnEQQRitLVGVDASTKMLDIAEQCTAtkgcglpispddsknkgepklYDALLDLDLEEMTLDNTLmekdaaFELIVAADVFVYFGSLERMMQVLSHLSSDRGLLIFT 420
                  5677777888887777788899****************99762222213444335678***********9888899***************999677778888888754333555567***********************************7 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.4   4.2e-06    0.0034      51      96 ..     282     338 ..     238     369 .. 0.75
   2 !    5.5   0.1    0.0026       2.1     111     146 ..     377     413 ..     368     430 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.2e-06
    TIGR02021  51 d.slkGkkvlDAGCGtGllsielAk.....rG.....aivkavDiseklvelarkra 96 
                  + ++   +vlDAGCGtGl   el k     +G        ++vD s k++++a++ +
  MMETSP1061-20121228|23340_1 282 EtNIVVRNVLDAGCGTGLAGRELRKviddrEGneqqrITLVGVDASTKMLDIAEQCT 338
                  34677789***********99997544444442211145678999999999988765 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0026
    TIGR02021 111 dleslegkfDavvalDvlihYp.aediakalerlasl 146
                   l + +  f+ +va Dv +++   e + ++l++l+s 
  MMETSP1061-20121228|23340_1 377 TLMEKDAAFELIVAADVFVYFGsLERMMQVLSHLSSD 413
                  56677889************96258899999999874 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.5   2.7e-06    0.0022      36     151 ..     271     419 ..     254     428 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.7e-06
    TIGR01983  36 kikkklkkne..kkleglkvlDvGcGgGllseslar.....lgae.....vtgiDlseelievAklhakkdplk.....................kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilfl 151
                  k+++ l+k++  +++   +vlD GcG Gl    l +     +g e      +g+D+s++++++A++ +++++                       +++ e  ++++   e++++f++++a +v     +le++++ +++l  + g l++
  MMETSP1061-20121228|23340_1 271 KVAEILEKDDdeTNIVVRNVLDAGCGTGLAGRELRKviddrEGNEqqritLVGVDASTKMLDIAEQCTATKGCGlpispddsknkgepklydallDLDLEEMTLDNTLMEKDAAFELIVAADVFVYFGSLERMMQVLSHLSSDRGLLIF 419
                  444444444344889999***********99888642222233324444599************9988887765455566666667776666666667777777766666667777777777777777777777777777766676666 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.5e-06    0.0012       2      81 ..     242     337 ..     241     347 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.5e-06
    TIGR01934   2 qevFdeiakkYD.llNdllSlGldrlWkkkavkkieee......keekvlDvatGtGdlaielakkae.........akvtgvDlseemLevakkk 81 
                   e+Fd+ a+++D +l + l + + ++  +k+++ +e+         ++vlD  +GtG    el k +            ++gvD s++mL++a++ 
  MMETSP1061-20121228|23340_1 242 AELFDSFAETFDeKLTKTLDYRVPQIIGSKVAEILEKDddetniVVRNVLDAGCGTGLAGRELRKVIDdregneqqrITLVGVDASTKMLDIAEQC 337
                  6677777777774467777777777777777777776655554456799***************999899999998878999***********985 PP

>> TIGR00740  TIGR00740: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.9e-05     0.048      22      97 ..     249     336 ..     238     348 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.9e-05
    TIGR00740  22 aevfddmlersvpgys.eilsl.igmlaerivt....pkslvydlGcslGaatlsvrrni......qqdevkligidnsqpmlerare 97 
                  ae fd+ l +++ +   +i+   ++ + e+  +       +v d Gc +G a   +r+ i      +q+ + l+g+d s+ ml+ a++
  MMETSP1061-20121228|23340_1 249 AETFDEKLTKTLDYRVpQIIGSkVAEILEKDDDetniVVRNVLDAGCGTGLAGRELRKVIddregnEQQRITLVGVDASTKMLDIAEQ 336
                  566666666655553212332223332222221222356789********99999888883333334678*************98766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.35
# Mc/sec: 1878.02
//
Query:       MMETSP1061-20121228|23350_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 1368.29
//
Query:       MMETSP1061-20121228|23357_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 1226.40
//
Query:       MMETSP1061-20121228|23364_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.8   0.1      0.057   11.7   0.1    1.5  1  TIGR01985 phasin_2: phasin


Domain annotation for each model (and alignments):
>> TIGR01985  phasin_2: phasin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   1.4e-05     0.057      22      85 ..     129     193 ..     114     199 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.4e-05
    TIGR01985  22 aklkkaaeettkaledalstssktaaeiskkviefleanaeaa.fdflqkLvsAkdlsealelqs 85 
                  + ++  +++ ++ ++++l+ts +t + ++ ++  f+++  ea  + ++q++  Ak+l e ++l s
  MMETSP1061-20121228|23364_1 129 GVFAVVSQDASQYIQNILTTSGLTFSILVGQTYYFMYQQQEAIyLALFQEVTMAKSLLEQVALVS 193
                  56888899999*******************************6489*************999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 1474.51
//
Query:       MMETSP1061-20121228|23367_1  [L=440]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (440 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1935.84
//
Query:       MMETSP1061-20121228|23393_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-86  285.6   0.4    1.1e-85  285.2   0.2    1.1  1  TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase
  ------ inclusion threshold ------
      0.035   11.5   0.0      0.093   10.1   0.0    1.7  1  TIGR01752 flav_long: flavodoxin


Domain annotation for each model (and alignments):
>> TIGR00222  panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  285.2   0.2   5.2e-89   1.1e-85       6     262 ..      46     314 ..      41     316 .. 0.92

  Alignments for each domain:
  == domain 1    score: 285.2 bits;  conditional E-value: 5.2e-89
    TIGR00222   6 ldllqakkqeekivaltaydaaiaklledagvdvilvGdslgmvvlgldstlsvsvedmiyhtkavkrGak....nalivtdlPflsyke..eeqalknaarvlketgadavkleGGe.elvetvkalteegvpvvghlGltPqsvrllGgykvqGkdeeaakklledalaleeaGvlllvlecvpaelaakiteklkiPviGiGaGkkadGqvlvladllGl.....tverkPkfvkeylklketieeavkkyvdevrkrafPeekes 262
                  l+l  +k++ +ki ++tayd + a  +  ag+d++lvGds++mv lg+++t +vs+e+mi+h ++vkrG +     +++v d+Pf sy+    + al+na r +ke+g davkleGG  + ++t +++ + gv v+gh+GltPq ++++Gg++ qG+    a +ll+dal l++aG + +vlecvpa++aa ite+l++P+iGiGaG  + Gqvlv++d+lG+      +++ Pkf k+y ++ + i+e ++++ +ev++++fP+e+ s
  MMETSP1061-20121228|23393_1  46 LSLNAKKRKGKKITMVTAYDFPSAAHVGRAGIDMVLVGDSVAMVELGHETTQNVSIESMIHHCQSVKRGLElaesGSMLVGDMPFGSYEYedTDVALRNAYRFVKEAGCDAVKLEGGSiHRARTAQKIVDGGVAVMGHVGLTPQAISVIGGFRAQGRTAVRARQLLDDALRLQDAGCFSVVLECVPANVAAAITETLEVPTIGIGAGGGTSGQVLVYHDMLGMlshphHQQFVPKFCKNYAQVGHAIQEGLSQFKAEVESGVFPGEEYS 314
                  566677888999************9999*****************************************862222469*********987436679**********************899*****************************************************************************************************72222246789********************************9865 PP

>> TIGR01752  flav_long: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   4.5e-05     0.093      76     138 ..      81     149 ..      76     156 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 4.5e-05
    TIGR01752  76 lkgktvalfGlGdqegys...etfvdalgilad..klkarGakvvGewptdgyefeask.avaegdkFv 138
                  l g  va++ lG +++     e+ ++  + ++   +l++ G+ +vG +p  +ye+e+++ a+++  +Fv
  MMETSP1061-20121228|23393_1  81 LVGDSVAMVELGHETTQNvsiESMIHHCQSVKRglELAESGSMLVGDMPFGSYEYEDTDvALRNAYRFV 149
                  5677788888887655431113333333333332246789****************9984566666887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.20
# Mc/sec: 2435.20
//
Query:       MMETSP1061-20121228|23418_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-19   66.4   0.4    1.5e-11   42.2   0.0    3.0  2  TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
    7.7e-13   45.8   5.8    3.1e-06   24.1   0.6    3.1  2  TIGR01330 bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
    8.2e-09   33.1   1.7      0.012   12.9   0.0    3.3  3  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN


Domain annotation for each model (and alignments):
>> TIGR01331  bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   6.2e-08   8.5e-05       6      68 ..      82     145 ..      77     154 .. 0.79
   2 !   42.2   0.0   1.1e-14   1.5e-11      80     248 ..     245     436 ..     226     438 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 6.2e-08
    TIGR01331   6 ikiakeAgeeilevyqkelaveekeDesPvteADlaaeklilekLr.altPdiPvlsEEeaeig 68 
                  + +  +A++e  +  + + +++ k D s vt+AD+aa+++i++ L  ++  +i ++ EE++e+ 
  MMETSP1061-20121228|23418_1  82 TALVSSASTECDDGVESKKNARLKIDGSFVTDADMAAQQIIVDALYnKVSSEIRIVGEENEEEM 145
                  55556666666666667778899*********************96257789*******98875 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 1.1e-14
    TIGR01331  80 LvDPlDGtkeFikrnge.FtvniaLveegkPvlGvvyaP........vlg....vlyfaeagkaakkevdd..qalkkkikvreadsealavvisrshaeekvkelleelgaelvv......s...vgsslkiclvAegsadiYpRlgptseWDtaAgeavlkeaGgeildldgkplaynkreqslrnpnFvv 248
                   +DPlD t+ + k + +  ++++a++ +++P  Gv++ P        vl+     +y ++   aa+ + +d  q+++ ++++  + ++  + vis+s++ + +++++++l+++ ++          ++ sl+i    e +   +   g ts WD aA++a+l++ Gg+++d  g+ ++y+k  ++ +n n vv
  MMETSP1061-20121228|23418_1 245 WIDPLDATNSYAKADYDpVSTLVAIIVDQTPCFGVICKPfgysgqpvVLDtgcmAVYGGTLLGAAYIAGSDriQHKNDNTRDPVVVEDLPRTVISQSRS-KSIERFVAHLAEKGMIhpepllVsgaGEKSLRIITRFENEGLWFFPTGGTSLWDVAASDALLRATGGKLTDKYGNDIDYSKSRKDAENVNGVV 436
                  49***********9987579*****************99333333322221121356666666777776666777777777777777778888887654.4566666655554433111111211134577777778999999999***********************************999999977665 PP

>> TIGR01330  bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.6   2.3e-09   3.1e-06       8      96 ..      77     162 ..      70     185 .. 0.77
   2 !   22.6   0.2   6.4e-09   8.7e-06     294     348 ..     394     449 ..     238     457 .] 0.74

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 2.3e-09
    TIGR01330   8 vavkavrkaslLtkkvqeklikekaadvkskdDksPvtvaDygaqaivilvlkeefpddklsivaeedsetLseddsaqvlgrvselvn 96 
                  +a ++  + s+ ++   + + ++k a  + k D s vt aD +aq i++ +l ++++++   iv+ee+ e+++++  ++  +r++ + +
  MMETSP1061-20121228|23418_1  77 AADQITALVSSASTECDDGVESKKNA--RLKIDGSFVTDADMAAQQIIVDALYNKVSSEI-RIVGEENEEEMRKHIITGHEERLESIYQ 162
                  55566666666666666777777554..8999************************9997.9************877777777766655 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 6.4e-09
    TIGR01330 294 kiWDhaaGaviveeaGGvvtDaagkpLDfskGrtLe.ldkGviaasgkvleelvvk 348
                   +WD aa   + +  GG  tD  g+++D+sk r  + + +Gv+a++++++++  + 
  MMETSP1061-20121228|23418_1 394 SLWDVAASDALLRATGGKLTDKYGNDIDYSKSRKDAeNVNGVVACYDHEMHAECIR 449
                  58******************************9876478***********998775 PP

>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.2   3.9e-05     0.053      25      69 ..     100     145 ..      68     150 .. 0.71
   2 !   12.9   0.0   9.1e-06     0.012      71     115 ..     240     284 ..     228     328 .. 0.85
   3 !    7.0   0.0   0.00055      0.75     202     232 ..     393     423 ..     390     451 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 3.9e-05
    TIGR02067  25 lkvdkksdktpVteADraaEeaireliaakfPdd.gilGEEfgeee 69 
                  ++   k d + Vt+AD aa ++i++ + +k+ ++  i+GEE +ee 
  MMETSP1061-20121228|23418_1 100 KNARLKIDGSFVTDADMAAQQIIVDALYNKVSSEiRIVGEENEEEM 145
                  2333344559**************999888765438*****99765 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 9.1e-06
    TIGR02067  71 daeyvWvlDPiDGTksFirG..vPvwgtLiaLlekgkpvlGvisqPa 115
                  ++  vW +DP+D T s+ +    Pv +tL+a+  +++p +Gvi +P+
  MMETSP1061-20121228|23418_1 240 SRISVW-IDPLDATNSYAKAdyDPV-STLVAIIVDQTPCFGVICKPF 284
                  445678.6*********98633587.9*******************8 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.00055
    TIGR02067 202 lspyDiaalipiieeAggvitdwkGkeaeeg 232
                   s++D+aa   ++   gg++td  G++   +
  MMETSP1061-20121228|23418_1 393 TSLWDVAASDALLRATGGKLTDKYGNDIDYS 423
                  589**********************987633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2319.96
//
Query:       MMETSP1061-20121228|23435_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 2533.18
//
Query:       MMETSP1061-20121228|23438_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       263  (0.0641151); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.26
# Mc/sec: 3274.34
//
Query:       MMETSP1061-20121228|23460_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   12.1   0.0      0.049   11.4   0.0    1.3  1  TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension


Domain annotation for each model (and alignments):
>> TIGR03595  Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.2e-05     0.049      24      53 ..      38      67 ..      35      68 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.2e-05
    TIGR03595 24 ktdfnndeavgrlarkLkklGveeaLrkaG 53
                  +++++ ++  +++  L++ G+e++L++ G
  MMETSP1061-20121228|23460_1 38 EIEIKEYDNFEMFQSALRQCGLENKLKAIG 67
                 68999*********************9877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 1039.41
//
Query:       MMETSP1061-20121228|23496_1  [L=647]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-06   24.8   0.8    4.3e-06   24.8   0.6    3.0  3  TIGR00880 2_A_01_02: multidrug resistance protein
    0.00054   16.7   0.3    0.00054   16.7   0.2    2.2  2  TIGR00898 2A0119: cation transport protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.6   2.1e-09   4.3e-06      12     140 ..     220     352 ..     210     353 .. 0.83
   2 ?   -2.2   0.1      0.44   9.1e+02      98     113 ..     441     456 ..     430     468 .. 0.48
   3 !    4.3   4.7    0.0043       8.8      48     134 ..     514     599 ..     493     605 .. 0.65

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.1e-09
    TIGR00880  12 lvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaali.....adiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllpe 140
                  ++++p+ g+l+dr+Grk+  l+  ++ v  ++l  +   +++li++r+++G++++  +++  + +      + +++ee++  +   +++ +l++i +  l  +la+ +g   +f  ++   ++afi+++fl++e
  MMETSP1061-20121228|23496_1 220 AITAPITGPLIDRFGRKKSALLYCALEVGINMLEQF-PFLSGLIVSRVVGGITTNLLSTVFETWLdteyrNRGFAKEEYETLMRDSVVVSNLAAIASGYLAHILAESFGNTGPFEGAVTCTAVAFIVIFFLWNE 352
                  6899**************887766665555555444.689*******************998876222214567788888888888999999999999999******************************998 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.44
    TIGR00880  98 lgpilGpllGavlaqa 113
                   + + + +lG++  +a
  MMETSP1061-20121228|23496_1 441 GAYMAAGVLGGLCSSA 456
                  2222333344444433 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.0043
    TIGR00880  48 ssnitvliiarilqGfgaaaal.vagaaliadii.keeersvalgllsagialgpilGpllGavlaqalgwralflilallallafill 134
                  +  +t  i ++ ++G   ++ + +   +++++i+ ++e r+ ++ + s+++++++ ++ + + ++ +     alfli++++ +  f+ l
  MMETSP1061-20121228|23496_1 514 TAEYTFSIALFSFIGYEFSVGIySPCEGMMRSIYiPPESRGSIMTVPSIIVNVAVAMAVVSTEAVSTQ---TALFLIAMMMTTCGFLQL 599
                  23444444455555554444431345688888863777*************************99977...588999888776666544 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.2   2.6e-07   0.00054     132     195 ..     209     274 ..     207     291 .. 0.80
   2 ?    0.6   0.9     0.019        40     392     431 ..     560     599 ..     551     606 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 2.6e-07
    TIGR00898 132 qsvvfvGvLlGsl...vlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiag 195
                   s++ +G++ G++   + G l DrfGRkk  ll +  +  +++l  f p ++ ++v r++ G+ +  
  MMETSP1061-20121228|23496_1 209 ASLYCLGFITGAItapITGPLIDRFGRKKSALLYCALEVGINMLEQF-PFLSGLIVSRVVGGITTNL 274
                  699999**9997633379***************************99.88999999**999987654 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.019
    TIGR00898 392 lllagvallllllvpeelkllrtalavvgkagissaFqma 431
                    +   + +++++v+ e   ++tal +++ ++ +  F  +
  MMETSP1061-20121228|23496_1 560 PSIIVNVAVAMAVVSTEAVSTQTALFLIAMMMTTCGFLQL 599
                  4455567789999999999*************99999655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (647 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 2754.74
//
Query:       MMETSP1061-20121228|23504_1  [L=486]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-62  207.8   0.0    4.4e-61  204.8   0.0    1.9  1  TIGR00218 manA: mannose-6-phosphate isomerase, class I


Domain annotation for each model (and alignments):
>> TIGR00218  manA: mannose-6-phosphate isomerase, class I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  204.8   0.0   1.1e-64   4.4e-61      12     344 ..      34     399 ..      26     411 .. 0.81

  Alignments for each domain:
  == domain 1    score: 204.8 bits;  conditional E-value: 1.1e-64
    TIGR00218  12 kerdWGk........gtalad.llgysipskqtaElWagaHkkgsSkvqngkkvsLrdliekhksellGkaeadrfelPlLvkvLsaekplsiqvHPdkalakigyakekrnYkDknhkpelvialtdfealkgfkpLkriaelh.........................eeaerlgkteawviiasdekikeaaeilkealkns..............keelkekiqrl..iypedvglfkgllLnrvklkpgeaiyvrsgtvHAykggdvlEvmanSdnvvragltdkyldvkklvevltveekpeeklkeqkqke.gaevlflvpieefavlktdlseka..elksqdsalillvleGdglilsgekklklkkGesfliaakl 344
                  k+++WG           a+ + +l y +p  ++aElW g+H+kg+Sk +   +++L+d             +++  elP+L+kvLsa k lsiq+HPdk++a+ +  +++ nY D nhkpe++ialt+fea++gf+ +++i  l                           +++ ++k +++++    e  +e+  +l  +l+ +              ++     + rl  ++p d g   +  Ln + + pge +++ ++++HAy  g+++E+ma Sdnvvraglt+k++dv++lv++lt+     + +    + e    + +++p+ ef+v+  +++     ++k+  ++ ++++leG+g +        +++G s   +a+ 
  MMETSP1061-20121228|23504_1  34 KDYAWGIrgmdsrvaRYAIENkALDYVDPDTPYAELWIGTHPKGPSKLKT--GELLQDA------------IGN--ELPFLLKVLSAGKALSIQAHPDKENAERLNRDNPANYSDANHKPEMAIALTPFEAMCGFRRIEEISLLIkqhpefaacisqeaklgiflasnveSQKDAMQKLFSSFMSCDPEVSSEQLDLLLFRLQAEqsnfhrhpheepawERKCSRAVLRLsqQFPGDPGAMAPFFLNYLLIAPGESFFMAANEPHAYVAGEIIECMACSDNVVRAGLTPKFKDVENLVNMLTYSMGGPNINAGAYSMEnPDVIRYTPPCPEFEVMILTVEPGKqsTFKNPGVPVVMIILEGSGDLDG----KLCRPGRSYYWPANS 399
                  57888865554333333333213456667777*****************9..4455444............333..59***********************************************************777776666778888999*999*******888655555********999999899999999998888888999*998766665555555555589***********************************************************************998777777666555256889************9998443369***************886522....234556666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (486 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 2565.87
//
Query:       MMETSP1061-20121228|23517_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.4e-12   43.1   0.0    8.5e-12   43.1   0.0    1.0  1  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
    2.3e-06   25.2   0.0    3.9e-06   24.4   0.0    1.3  1  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
      7e-05   20.5   0.0    7.9e-05   20.4   0.0    1.0  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    0.00098   17.0   0.0     0.0012   16.8   0.0    1.1  1  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
     0.0035   14.8   0.0      0.004   14.6   0.0    1.0  1  TIGR01454 AHBA_synth_RP: AHBA synthesis associated protein
     0.0037   15.3   0.0     0.0044   15.1   0.0    1.1  1  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase


Domain annotation for each model (and alignments):
>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.2e-14   8.5e-12      99     152 ..       2      54 ..       1      71 [. 0.93

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.2e-14
    TIGR01993  99 rkiiftNadkahaeralkrLgiedcFdgiidieaanlelilKPspeayekalre 152
                  +k++ftNa +  a+  l+ Lg++d Fd+++ ++ ++ + ++KP+pea+ k+l  
  MMETSP1061-20121228|23517_1   2 KKVVFTNAPESSANEILHLLGVSDLFDAVLGTDFLESR-VCKPEPEAFAKVLGY 54 
                  89************************************.8**********9975 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   5.7e-09   3.9e-06     106     146 ..       5      45 ..       2      55 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 5.7e-09
    TIGR01449 106 lvtnkPealarplLellglakylevligGdslaqrkPdPeP 146
                  + tn Pe+ a ++L+llg+++++++++g d l+ r  +PeP
  MMETSP1061-20121228|23517_1   5 VFTNAPESSANEILHLLGVSDLFDAVLGTDFLESRVCKPEP 45 
                  67*******************************99655555 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.2e-07   7.9e-05     114     160 ..       4      52 ..       1      58 [. 0.87

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.2e-07
    TIGR02253 114 gliTdgltekqweklerlgvrdfFdavivse..elgveKPhpkiFkaal 160
                  ++ T++++   +e l+ lgv d+Fdav+  +  e  v KP+p+ F + l
  MMETSP1061-20121228|23517_1   4 VVFTNAPESSANEILHLLGVSDLFDAVLGTDflESRVCKPEPEAFAKVL 52 
                  688***************************93345689*******9876 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.7e-06    0.0012     111     157 ..       4      52 ..       1      57 [. 0.89

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.7e-06
    TIGR01428 111 viLsNgstatlkslvkkagldlefdallsad..avraYKPapkvYelal 157
                  v+ +N+ + + +++++ +g+++ fda+l  d  + r+ KP+p++++ +l
  MMETSP1061-20121228|23517_1   4 VVFTNAPESSANEILHLLGVSDLFDAVLGTDflESRVCKPEPEAFAKVL 52 
                  789****************************555699********8765 PP

>> TIGR01454  AHBA_synth_RP: AHBA synthesis associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.9e-06     0.004      96     144 ..       5      55 ..       2      64 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.9e-06
    TIGR01454  96 iatgksgprarsllealgllelldevigsd..evarpkpapdivrealdll 144
                  + t    + a  +l+ lg+ +l+d v+g+d  e    kp+p+   + l+ l
  MMETSP1061-20121228|23517_1   5 VFTNAPESSANEILHLLGVSDLFDAVLGTDflESRVCKPEPEAFAKVLGYL 55 
                  556667788999******************555567899999888877765 PP

>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.4e-06    0.0044     115     152 ..      12      51 ..       3      57 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.4e-06
    TIGR02009 115 knakaiLaklgltdlfdavvdasevke..gKPaPetFLaa 152
                   +a+ iL+ lg+ dlfdav   + +     KP+Pe F ++
  MMETSP1061-20121228|23517_1  12 SSANEILHLLGVSDLFDAVLGTDFLESrvCKPEPEAFAKV 51 
                  67899**************99998877779*******876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 521.01
//
Query:       MMETSP1061-20121228|23526_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1262.50
//
Query:       MMETSP1061-20121228|23536_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00019   18.7   0.0    0.00025   18.3   0.0    1.1  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
    0.00054   18.1   5.7    0.00054   18.1   4.0    1.8  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
     0.0011   15.7   0.0     0.0015   15.3   0.0    1.1  1  TIGR00115 tig: trigger factor
  ------ inclusion threshold ------
      0.021   13.0   3.4      0.036   12.2   2.3    1.4  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
      0.043   10.5   0.5      0.044   10.4   0.4    1.1  1  TIGR01412 tat_substr_1: Tat-translocated enzyme


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     3e-07   0.00025      63     155 ..      45     139 ..      22     144 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 3e-07
    TIGR03516  63 kyetskkGfwyaykkkdttetktpetgDlvsfeyeikaldgdviyskeelgpkt...ykvdqedlisGlrdglklmkegeevtfllPsykayGyyG 155
                  + ++ ++G  ya  ++d +++  p++gD++  ey+    +g    + +  g +    +k+    + +G+   +  mk g++v  ++P   a+G  G
  MMETSP1061-20121228|23536_1  45 TVFKLDNGVKYAV-TQDVAKGSYPQQGDIIAIEYTGYLANGAIFDATHSQGKQNallFKLGSSVVNQGINSMVSEMKVGQKVQAIIPPELAFGEKG 139
                  5566689999996.5788999*************977666655555555666651115666688999**************************765 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   4.0   6.5e-07   0.00054       2      25 ..      14      39 ..      13      43 .. 0.78
   2 ?   -2.8   0.0       2.8   2.3e+03       6      11 ..     160     165 ..     160     166 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 6.5e-07
    TIGR01409  2 sRRdFLkaaaaagaaaglgl..llps 25
                 sRR+FL +aaaa+a++++++  + ++
  MMETSP1061-20121228|23536_1 14 SRRGFLSTAAAAAAVVTAAAvqPIQN 39
                 9*********9999999997444444 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 2.8
    TIGR01409   6 FLkaaa 11 
                  FLk+a+
  MMETSP1061-20121228|23536_1 160 FLKKAS 165
                  9**987 PP

>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-06    0.0015     139     203 ..      56     126 ..      52     132 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.8e-06
    TIGR00115 139 atlvpverd.aaekgDivtidfeg.kvdGeafe....ggkaedfelelgsgqfipgfeeqlvGmkaGeeke 203
                  a  ++v+++   ++gDi+ i+++g   +G  f+    +gk++   ++lgs+ + +g++  +  mk+G++++
  MMETSP1061-20121228|23536_1  56 AVTQDVAKGsYPQQGDIIAIEYTGyLANGAIFDathsQGKQNALLFKLGSSVVNQGINSMVSEMKVGQKVQ 126
                  556778877789************555888776332267888889***********************986 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   2.3   4.4e-05     0.036       5      40 ..       9      42 ..       4      63 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 4.4e-05
    TIGR02811  5 qkadlsRRdLLkglavgaaagavaaatgrvasasaa 40
                  +++ sRR +L  +a++aa   +aa+ +     +aa
  MMETSP1061-20121228|23536_1  9 AATTQSRRGFLSTAAAAAAVVTAAAVQPIQ--NAAA 42
                 56789******9777666655555555542..2222 PP

>> TIGR01412  tat_substr_1: Tat-translocated enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.4   5.4e-05     0.044       2      47 ..       7      49 ..       6     134 .. 0.59

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.4e-05
    TIGR01412  2 knkpeqvsRRrllktagaagavvaigaalgglavavataaktaksa 47
                 k++++  sRR +l ta+aa+avv+++a      +++a aa t ++ 
  MMETSP1061-20121228|23536_1  7 KHAATTQSRRGFLSTAAAAAAVVTAAAVQP---IQNAAAAPTVFKL 49
                 6678899****************9888752...2233333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1174.01
//
Query:       MMETSP1061-20121228|23545_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 335.97
//
Query:       MMETSP1061-20121228|23551_1  [L=626]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00022   18.6   0.0    0.00046   17.5   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0085   11.7   0.0      0.014   11.0   0.0    1.3  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   2.2e-07   0.00046      72     136 ..     126     203 ..     121     227 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 2.2e-07
    TIGR03724  72 kkivmeyiegkklkdlleekel...........ellkevGelvgklHkag..ivhgDlttsNiivkddklyliDfGLg 136
                    i+mey eg +  d++++               ++ ++ ++v+ lH ++  ivh Dl + N++vk++   l DfG +
  MMETSP1061-20121228|23551_1 126 HCILMEYCEGGHALDVCNKLAAagerfdlstliIAFGQICNAVSYLHAQRppIVHRDLKPVNFLVKNGAYKLCDFGSA 203
                  5789999999888888888666788888886666677888999****98666***********************965 PP

>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.0   0.0     7e-06     0.014      68     131 ..     143     205 ..     118     258 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 7e-06
    TIGR03903  68 evLaadGaLpaaetgrL.mlqvLDalaaahda..GvvhRDLkPqnimvsaadveshakvLDFGigaL 131
                  + Laa G      t  +   q+ +a++  h++   +vhRDLkP n +v +       k+ DFG +  
  MMETSP1061-20121228|23551_1 143 NKLAAAGERFDLSTLIIaFGQICNAVSYLHAQrpPIVHRDLKPVNFLVKNG----AYKLCDFGSAVF 205
                  55666665555555443146999999987766337***********99754....457778885544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (626 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.35
# Mc/sec: 2360.72
//
Query:       MMETSP1061-20121228|23595_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 327.10
//
Query:       MMETSP1061-20121228|23591_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       324  (0.0789859); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 1707.86
//
Query:       MMETSP1061-20121228|23616_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 444.59
//
Query:       MMETSP1061-20121228|23613_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   15.7   0.0     0.0019   15.1   0.0    1.2  1  TIGR03946 viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent
     0.0042   15.7   0.0      0.041   12.5   0.0    2.0  2  TIGR04029 CMD_Avi_7170: CMD domain protein, Avi_7170 family


Domain annotation for each model (and alignments):
>> TIGR03946  viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.5e-07    0.0019     256     296 ..     210     250 ..     171     260 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.5e-07
    TIGR03946 256 eeaaealdaliklidaklrevvldqGdvafidnrravhGrr 296
                  ++ a+ +  li+  +++ +e+vl  Gd++f +  ++ hGr 
  MMETSP1061-20121228|23613_1 210 SDDADPWPVLIEDFHGNTHEIVLTSGDILFYESSKVFHGRP 250
                  445567889******************************94 PP

>> TIGR04029  CMD_Avi_7170: CMD domain protein, Avi_7170 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.084   1.7e+02      42      72 ..      20      47 ..      11      53 .. 0.84
   2 !   12.5   0.0     2e-05     0.041      74     122 ..     107     162 ..      86     179 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.084
    TIGR04029 42 agdfslaeRyavAakvaklhqdeelaafYad 72
                 ++ fs++ R+ vA    +l + +++a+fYa 
  MMETSP1061-20121228|23613_1 20 PSMFSTTARFGVAG---GLTERDRVAEFYAR 47
                 78899999999995...78899999999985 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 2e-05
    TIGR04029  74 ladeaeelveaieaaaregasaGPy.......seatllvradaaelgprLaaAldh 122
                  la ++++l+ea+++ +r+g++aGP          +++ +++d ++l+ r+   l+h
  MMETSP1061-20121228|23613_1 107 LARAPDDLMEALRKGVRDGVAAGPGlerdvevIDGDTPWFVDRPDLTRRVLEELQH 162
                  5566779*****************99999988889999***********9999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 1365.14
//
Query:       MMETSP1061-20121228|23603_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-136  453.0   3.7   2.6e-135  449.6   2.5    1.9  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    1.7e-75  252.3   0.1    3.3e-75  251.3   0.1    1.4  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
    1.1e-74  249.4   0.1    2.9e-74  248.1   0.0    1.5  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
    3.2e-72  241.7   0.2    6.4e-72  240.8   0.1    1.3  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    9.7e-67  223.6   0.3    2.1e-66  222.5   0.2    1.5  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    4.4e-65  218.1   0.1    6.4e-65  217.6   0.1    1.2  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    1.3e-61  206.5   1.7    2.7e-61  205.5   1.2    1.5  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    1.7e-55  186.5   1.2    3.4e-55  185.5   0.8    1.4  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    3.8e-53  178.6   0.3    6.4e-53  177.8   0.2    1.2  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    2.2e-45  153.0   0.0    4.3e-45  152.0   0.0    1.4  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    5.3e-43  145.2   0.0    8.3e-43  144.6   0.0    1.2  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    2.6e-19   66.7   0.2    4.4e-19   66.0   0.2    1.3  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    7.1e-10   35.5   1.2    7.9e-09   32.1   0.8    1.9  1  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN
    1.8e-05   21.6   1.5    2.7e-05   21.0   0.0    1.8  2  TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating)


Domain annotation for each model (and alignments):
>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.6   2.5    9e-138  2.6e-135       1     477 []       7     497 ..       7     497 .. 0.93

  Alignments for each domain:
  == domain 1    score: 449.6 bits;  conditional E-value: 9e-138
    TIGR01722   1 vkhlidGkfvegksdkyipvsnpatnevlakvaeasaeevdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGktledakGdvarGlevvehacsvtslllGetvesvakdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhGdkeavdrllehpdvkavsfvGsvavgeyiyetgsa..hgkrvqalaGaknhmvvlpdadkeaaldalvgaavGaaGqrcmaisaavlvGaake................lveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgykveGyeeGnfvGitllervkpd.mkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsdGaaarkfqheievGqvGvnvpipvplpffsftGwkd..slfGdlhiyGkqGvrfytrlktvtarw 477
                  v  +i G fv   +++y++v npa+++++++va ++a +vd avasa+++f++w+  ++ +ra vl++++al++eh +e+a+li+ e+Gk +++a  dva+G e ve acs++ l +G+t  +v+ +v     r plGvva i pfnfp m+p+w  p+a++ Gn+ vlkpsekvp++    a+l+++aG+pdGv+n+v G +  v+ l++h dv+av+fvGs++v++ + +++ a  + kr  al+Gaknh v l d + + a+ ++  +  G+aGqrcma s+ + v + +e                lv++i+ +a k++ g+g     e+Gp+i +++ +r+ s+i+++ ++Gae+lldGr +k    +eG ++G+t+l++ +p+  k+  ee+fGpvl vl + ++e+a+ + n +p+Gn ++i+t++G+ a  f  +  + ++Gvn+ ipvp   fsf+G  +  s +Gd++i G+  ++f+++   vt++w
  MMETSP1061-20121228|23603_1   7 VDNYICGGFVPPSTNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGNTL-RVSGQVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGTRACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRAlpEPKRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTVDESEErkhgngdsvsvsagdaLVQKIVSAASKIKAGSGP---GEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKK---DEGFWIGPTILKHTNPEeDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNIGIPVPREPFSFGGLYGtrSKYGDMDITGDGAMEFFSNRVKVTSKW 497
                  6789*******************************************************************************************************************97.699**********************************************************************************************************987764479**********************99999999999***********9877654322112222222222222299**********998874...59**********************************95...69**********9998625899************************************************************************8543399************************* PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.3   0.1   1.1e-77   3.3e-75       2     472 ..       8     491 ..       7     498 .. 0.87

  Alignments for each domain:
  == domain 1    score: 251.3 bits;  conditional E-value: 1.1e-77
    TIGR02299   2 khlidGelvasesgetfetlsPadnevlasvakGgaedvdkavkaakkafkkwaelkaaerkklllkladliekhadeiavlesldtGqalrlvrkavaraaenfrffadkaeeakdgetlpvdeflnyt.vrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrn..gadtlkrlslelGGksPvivfddadleraldavvfmifslnGerctassrll.vqe..............siaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdad.nkmriaqeeifGPvltvipfkdeeealelandieyGlagyvwtedvgralrvaaaleaGmiyvnse.nvrdlrtPfGGvkas....GigreGGdysfdfytetk 472
                  + +i G +v+ + +e+++ ++Pad +++++va   a dvd av++akkaf++w++ + ++r+ +l+k   l+++ha+e+a l   + G+ ++   + va++ e  ++      +   g+tl+v   +  t  r p+Gvv+ i P+n Pfm+  w +  al +Gn+vvlkp+e  Plt    a+l ++aglPdGv+n+v+G  +   +alv+h +v+av+fvG++   +++ ++  + ++ kr     G k+ ++ ++d +++ a   ++       G+rc a+s ll v+e              s  + +v+k++  + +i+ G       e+GP+i+++ ++++lsy+e +e++Ga+il  g++ k+      ++G ++ Pt+l +++ ++ +   ee+fGPvl+v+p ++ e+a+++ n   +G a+ ++t + g a   +++  a m+ vn    v   +  fGG   +    G+    Gd +++f+ ++ 
  MMETSP1061-20121228|23603_1   8 DNYICGGFVPPSTNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSL-PQLAVGNTLRVSGQVSCTdRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGT-RACVEALVDHTDVQAVTFVGSSPVAKIVSQRcrALPEPKRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLtVDEseerkhgngdsvsvSAGDALVQKIVSAASKIKAGSG---PGEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKK------DEGFWIGPTILKHTNpEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNIGiPVPREPFSFGGLYGTrskyGDMDITGDGAMEFFSNRV 491
                  57999************************************************************************************************9999976655.5577899999996665552679******************************************************************5.7889**********************9988622456779998877889**************9999999999*********998834441222222222111123467899***********974...5789******************************99887......89*********988735789************************************************************7525666677788864321112555566777777777655 PP

>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.1   0.0   9.8e-77   2.9e-74       1     437 [.      10     456 ..      10     470 .. 0.90

  Alignments for each domain:
  == domain 1    score: 248.1 bits;  conditional E-value: 9.8e-77
    TIGR01804   1 fidGeyveaeagkvleiinPanqeviaevaeatredvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffaGladkleGeiielgipsfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkima..aaaeelkkvtlelGGksPlivfddadlelavdqallanffsaGqvcsnGtrvlvekkik...............ekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGffiePtvfadvt.ddmtivreeifGPvlsvlefeseeevikrandteyGlaagvftadleraervaerlkaGtvwindynls 437
                  +i G++v  ++++ +++inPa+ + i +va +++ dv+ a+a+a++a++ w++ +  +r+ +l +   l++++ +ela+l   + Gk + e+  ad++++ +++e+ + l +   G+++ ++++  +  rr+plGvv+ i ++n+P ++ +w +  al++Gna+vlkPse  Plt    a+l++ aGlP+Gvfn+v+G+ ++  e+lv+h dv+ v++ G+ +  k + +   a  e k+ t   G k+ l+ ++d +++ a+    ++    aGq c + + +l  ++ +               +++++k+v  + kik+G g     e+GP+i  +  d++l+yie + + ga+++  G   +++e   Gf+i Pt++   + ++ +   ee+fGPvlsvl  +s e++++  n   +G aa+++t+    a+   +r++a ++ +n   ++
  MMETSP1061-20121228|23603_1  10 YICGGFVPPSTNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEA-LADVAKGNETVEWACSLPQLAVGNTLRVSGQVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGT-RACVEALVDHTDVQAVTFVGSSPVAKIVSQrcRALPEPKRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTVDESEerkhgngdsvsvsagDALVQKIVSAASKIKAGSG---PGEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKKDE---GFWIGPTILKHTNpEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNIGIPV 456
                  899*****************************************************************************************.9*****************************8888899*********************************************************************.8899*********************9998855677788999987788*************9998877777789******9999886544331111111111122225789999999*******98...578*******************************9988866...********9887634456789************************************************99999988865555 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.8   0.1   2.2e-74   6.4e-72      43     496 ..      19     477 ..       8     493 .. 0.88

  Alignments for each domain:
  == domain 1    score: 240.8 bits;  conditional E-value: 2.2e-74
    TIGR01237  43 eteakidsinpadksevvGkvakasvedaeqalqaakkafeewkktdveeraaillkaaailkrrrhelsallvlevGkiyaeadaevaeaidfleyyaremiklakskevlsieGekn.rylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvle...........kvy....devverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaeg.klvlgged.ddskGyfikptifkdvdrk.arlaqeeifGpvvavlrakdfdealeiansteygltGgvisnsrerierakaefevGnlyfnrkitGaivgvqpfGGfkmsGtdskaGGpd 496
                   t++++d inpad s+ +G+va+ +  d ++a+ +akkaf++w    +++raa+l+k  a +++  +el+ l+v e Gk+++ea a+va+  + +e+ a ++ +la  +++l + G+        plGv  +i p+nfp+ + + +   ++v Gn+vvlkp+e+ ++   + ++++++aGlp Gv++ v G+   v e lvdh++++ +tf Gs  v  +i  +  +  p     kr  a  G k+ ++  e+ +++ a+a ++ s  G aGq+c aas ++ ++           +v     d++v+++v a+   k g++     ++gpvid+ s+d+i +yie ++++g +++l g + ++++G++i+pti+k+ +++  +   ee+fGpv++vl ++ +++a++i ns  +g + ++++    + +   + f+   l +n    G  v ++pf    + Gt sk G  d
  MMETSP1061-20121228|23603_1  19 STNEYMDVINPAD-SKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEW-ACSLPQLA-VGNTLRVSGQVScTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGTRACV-EALVDHTDVQAVTFVGSSPVA-KIVSQRCRALPEP---KRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTVDeseerkhgngdSVSvsagDALVQKIVSAASKIKAGSGPG---EMGPVIDRASYDRILSYIEHSEQKGaEILLDGREwKKDEGFWIGPTILKHTNPEeDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNI---GIPVPREPFSFGGLYGTRSKYGDMD 477
                  5899********9.6789***************************************************************************9995.88999**9.778888888865155789*****************999999*******************************************98877.78*****************96.6777777777765...788888899***********************************999876222222222222213344889999999988888887766...9********************998736677665527789***********9986257899****************************************************999995...6679999998888999999999776 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.5   0.2   7.1e-69   2.1e-66       1     427 [.      26     466 ..      26     475 .. 0.89

  Alignments for each domain:
  == domain 1    score: 222.5 bits;  conditional E-value: 7.1e-69
    TIGR01780   1 vvnPatGekigkvpevsveeveeaieaaeealktykeltakerakllrkwyelilenkddlaklltlenGkplkeakgevlyaasyleWfaeeakrvyGdviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsas.tvkkvslelGGn.aPlivfddadldqavegalaskfrnagqtcvcanrly.vhe..............svydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgGdkreekggnffePtvlsdvt.admlvakeetfGPlapvfkfddeeevvalandtevGlaayffskdlakiirvaeelevGlvgvntgl.isevvipfGGv 427
                  v+nPa  ++ig+v+  ++ +v++a+ +a++a++++++ t k+ra +l k++ l+ e+ ++la+l+ +enGk ++ea ++v+ +   +eW +   +   G++++ +  +      ++P+Gv+a+i+P+nfP  +    +  al  G +vv+kP+e+ Pl+    a l +kaG+P+gv+n+v +  ++  + l+++  v+ v+f Gs++v ki+ +++      k    lGG    l+  +d ++d a +++  s    agq c+ a  l+ v+e              s  d +++k++++ +k+k G G      +Gp+i++ + +++ + ie + +kGa+++++G + ++ +g ++ Pt+l + + ++ +  +ee fGP+ +v+  ++ e++v++ n  ++G aa +++ +  +    +  +   ++gvn g+ +  +  +fGG+
  MMETSP1061-20121228|23603_1  26 VINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGNTLRVSG-QVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGT-RACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRAlPEPKRCTALGGAkNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLtVDEseerkhgngdsvsvSAGDALVQKIVSAASKIKAGSGPG---EMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKKDEGFWIGPTILKHTNpEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNIGIpVPREPFSFGGL 466
                  78***************************************************************************************************98754.5567789****************9988999999****************************************995.677899***********************9996523345566777751567779**********9998888889******99876333222222222221211346999***************965...58******************************999*************99752678999***************************************999999999************9345677999997 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.6   0.1   2.2e-67   6.4e-65      13     442 ..      22     465 ..       9     473 .. 0.90

  Alignments for each domain:
  == domain 1    score: 217.6 bits;  conditional E-value: 2.2e-67
    TIGR03240  13 eslesldpvtqevlwqgkaasaaqvekavkaarkafpawarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikayeertGekeseladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGaretGkalaaeedidGllftGssntGallhrqlagrpekilalelGG.nnplvveevkdidaavhlivqsafisaGqrctcarrllvkdg.ae.............GdallerlvevaerltvgkydaepqpflGavisekaakellaaqekllalggksllelkqleeeaal.ltpgiidvtev..aevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGllsddrelydkflleiraGivnwnkpltGassaapfGG 442
                  e ++ ++p++++++ + + + a +v++av++a+kafp+w+++++++r+av+ +f +l++e+++elae+i +e gk + ea ++va   + v+ +    +   G++    ++ ++  r  p Gv+a + p+nfp  +p   +  al+ Gn+vv+kpse  pl+ +   +l++kaGlp+Gv+n+vqG+r   +al++++d+  + f Gss   +++ ++    pe      lGG  n lv  e  ++d+a+++i  s    aGqrc  a  ll  d+ +e             Gdal++++v  a+++++g+        +G+vi   + +++l+  e+ +++g++ ll+ ++ ++++++ + p+i+  t+   +++  ee+fgp+l+vl +++ ++a+++ n+  fG aa + + +  + d f+++ ra ++  n  +        fGG
  MMETSP1061-20121228|23603_1  22 EYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGNTLRVSGQVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGTRACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRALPEPKRCTALGGaKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTVDEsEErkhgngdsvsvsaGDALVQKIVSAASKIKAGSGPG----EMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKKDEGFwIGPTILKHTNPeeDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNIGIPVPREPFSFGG 465
                  567789****************************************************************************************999999**************************************99999**************************************************************************999999888888888358899999999**********9999*********9998643312122233222333338899999999999999886544....49***********************************9998579*******972234679***************************************************99988877766666666666 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.5   1.2   9.3e-64   2.7e-61       2     440 ..       8     451 ..       7     493 .. 0.86

  Alignments for each domain:
  == domain 1    score: 205.5 bits;  conditional E-value: 9.3e-64
    TIGR03216   2 knfidGafv..esektfedispvdgkviaevaeagkeevdaavkaaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvke.vslelGG.knaaivfadadldaavegvlrsaflntGqvclgtervy.v....er..........pifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtgl.pdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwtedlsrahrvakklevGvvwvn 440
                   n+i G fv  ++++ ++ i+p+d+k+i++va +++ +vd+av++a++a+ + w + ++++ra++l+k    +++ ++e+ +  v + Gk  + a   d+++g         + + +  ++++++   G ++     r plGvv+ i p+n+p+++  w v  al +Gn+vv+kpse+ p t    a++++++G+p+Gv+n+v+G  + +  e l+ h dv+a+tf G +   + + + +     +     lGG kn  + + d+++d a + ++ s    +Gq c+++  +  v    er             d +v+++ ++a k+k G       e+Gp+i ++  d++lsy +++ ++Ga+++  G       +++eG+++ pti+    p++++ + ee+fGpv  v p  s e++++  n++ +G aas++t++  +a   ++++ + +  vn
  MMETSP1061-20121228|23603_1   8 DNYICGGFVppSTNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPS-WSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEA-LADVAKGNETVEWACSLPQLAVGNTLRVS---G-QVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQG--TRACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRALPEPkRCTALGGaKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLtVdeseERkhgngdsvsvSAGDALVQKIVSAASKIKAGSGP---GEMGPVIDRASYDRILSYIEHSEQKGAEILLDGR----EWKKDEGFWIGPTILKHTnPEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVN 451
                  69*******97788888999*****************************987.*************************************88766.57*******99999998888888877764...4.333456789****************************************************************96..67899******************9998887766443332134566664999999****************9999*****987554322222223111111111145578888888888888888765...48****************************9996....45799*********986527999**********************************************999999999988887 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5   0.8   1.2e-57   3.4e-55      14     432 ..      20     451 ..       8     480 .. 0.84

  Alignments for each domain:
  == domain 1    score: 185.5 bits;  conditional E-value: 1.2e-57
    TIGR03374  14 egekqavynpatgevileiaeasaeqvdaavraadaafaewgqttpkaraelllkladaieenaevfaklesrncgkplhavlndeipaivdvfrffagaarclsglaageyl..eghtsmi.rrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaela.kdilpagvvnvlfgrgktvgdaltghekvrmvsltgsiatgehilahta...asikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriya.......qr........giydelveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggekvkgkgyyfaptllagak.qddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvn 432
                    e + v npa  + i  +a + a +vd av +a++af  w   t k ra +l+k+   ++e a+++a+l  ++ gk +  +l d       v       a  l  la g+ l   g+ s   rrdp+gvva+i p+n+p+m+  w +  al  gn+vvlkpse+ plt  + a+l  k  lp gv n++ g  + v +al  h  v+ v++ gs     +i+++ +   +  kr     g k  ++ ++d+++d  +  +       agq c aa  + +       ++        +  d+lv+k+ +a + +k g+      e+gp++  a  +r+ +++e++   +   ++ g e +k +g++  pt+l  ++ ++d+ + +evfgpv+s+      eq v+  n+  +g a+s++t   g a  +++r++     vn
  MMETSP1061-20121228|23603_1  20 TNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETV-----EWACSLPQLAVGNTLrvSGQVSCTdRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFqKAGLPDGVFNMVQGTRACV-EALVDHTDVQAVTFVGSSPVA-KIVSQRCralPEPKRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTvdeseerKHgngdsvsvSAGDALVQKIVSAASKIKAGSGP---GEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKKDEGFWIGPTILKHTNpEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVN 451
                  567889************************************************************************999888855443333.....44677999999998733588776449**************************************************9972567***********87766.89***************8765.566554401155688887777899999********9999997666678*******9987642222221122222221134588999999999999999864...689***********************9999*******************9876378999********************************************999998877666666 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.8   0.2   2.2e-55   6.4e-53      51     487 ..      22     474 ..      11     477 .. 0.83

  Alignments for each domain:
  == domain 1    score: 177.8 bits;  conditional E-value: 2.2e-55
    TIGR01238  51 eaqpvknpadrkdivGqvseadaaevqeavdsavaafaewsatdakeraailerladlleshmpelvallvreaGktlsnaiaevreavdflryyakqvedvldeesaka...........lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvadr......vltlikG.amdelkvgkpirltt.....dvGpvidaeakqnllahiekmkakakkvaqvkleddvesekgtfvaptlfelddlde...lkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvnrnlvGavvGvqpfGGeGlsGtGpkaG 487
                  e   v npad k  +G+v  + a +v++av sa +af+ ws+   k+raa+l ++  l+++h  el  l+v+e Gk + +a+a+v +  + +++ +   +  +++    +           lG+v +i p+nfp+ + +  +  al+ Gn+v+ kp+e+ +l   +a +l+q+aG+p gv +++ G  +    al +++ ++ v f Gs+ va+ + +      +++    a  G +n ++       +   ad+  s    aGqrc a  vl+  ++  +r       +++  G a+ +  v+   + ++     ++Gpvid  + +++l++ie+ ++k+ ++    +e   + ++g ++ pt+++  + +e   l++evfGpvl v+       ++ vd  n++ +g +  +++   +   + ++r ++  + vn   +G  v  +pf   Gl Gt  k G
  MMETSP1061-20121228|23603_1  22 EYMDVINPADSK-TIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGNTLRVSgqvsctdrrdpLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGTRAC-VEALVDHTDVQAVTFVGSSPVAKIVSQRCRALPEPK-RCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTVDESEERkhgngdSVSVSAGdALVQKIVSAASKIKAgsgpgEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREW--KKDEGFWIGPTILKHTNPEEdktLSEEVFGPVLSVLPVS--SWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVN---IGIPVPREPFSFGGLYGTRSKYG 474
                  566799****87.58*********************************************************************9755555554444333333333222234447778888******************************************************************995.579**********************99876655555.889999999**9999999999*********999**********99877666554222222233333324444455555544432222289******************999887665433333..4456789*****988765543349***********9765..567899999*********************************9...8999**************99987 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.0   1.5e-47   4.3e-45      15     411 ..      20     433 ..      11     489 .. 0.83

  Alignments for each domain:
  == domain 1    score: 152.0 bits;  conditional E-value: 1.5e-47
    TIGR03250  15 rdavievrepydgevvgtvpkasvedvrralevaaa.yrs..kltryerskileraaellaarkeeisdlitlesGlskkdslyevgrvadvlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiGkliaakagy....kravlelGG.ndplivledadldraadlavkGsyknsGqrctavkril.vqe..............svadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarlllg....nkrdGalyaptvldrvdpel.alvreetfGpvspvirfkdiddairisnstayglssgvctnrl 411
                  +++ ++v +p d++++g v ++++ dv  a++ a++ + s  + t  +r+++l++  +l++++ +e+++li  e G    ++l +v +  + ++ a +      g+++      +         r+pl gv++ai pfn p+   +  v  a+   n vvlkpsekvpl+  + adl+++aGlp+ ++++v G+ r+  ++l+ +  v+ vtf G+ ++ k ++++       kr    lGG  + l+ led ++d aa          +Gqrc a   +l v+e              s  d++++ +v  + ++k G       ++G vid a+   + + +e++ ++Ga++ll+    +k +G    pt+l++ +pe  + + ee fGpv  v+ +++ ++a+ i ns  +g ++++ t + 
  MMETSP1061-20121228|23603_1  20 TNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKaFPSwsSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGNTLRVSGQVSC-----TDRRDPL-GVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGT-RACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRAlpepKR-CTALGGaKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLtVDEseerkhgngdsvsvSAGDALVQKIVSAASKIKAGSG---PGEMGPVIDRASYDRILSYIEHSEQKGAEILLDgrewKKDEGFWIGPTILKHTNPEEdKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHG 433
                  67889*****************99999999998875254411445579***********************************************999887777777655444443.....4457998.7************999999999******************************************7.677899***********************99754233255.5567762578999*******88765555566789******999884343222233333322113346778888888888888864...579***************************98633334678999*********9986257899*******************************9998765 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6   0.0   2.8e-45   8.3e-43      43     452 ..      19     428 ..       6     447 .. 0.81

  Alignments for each domain:
  == domain 1    score: 144.6 bits;  conditional E-value: 2.8e-45
    TIGR01236  43 ksnelievvaPadhqaklakltnateedvkkaveaaldakkeWselpfadraaiflkaadllsgkyreeilaatmlgqsktvyqaeidavaelidffrfnvkyarelleqqPsvsapgelnkveyrpleGfvaaisPfnftaiaanlagaPal.mGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadveevvaatirgafeyqGqkcsaasrly.vpkslwkelk..eellaelkkvkvgdv.........ddlssfmgavideksfakivkviekakkdpeeleilaGGkyddskGyfvePtvveskdPke.klmkeeifGPvltvyvydddkykeilevvdstskyaltGav 452
                  ++ne ++v +Pad  + ++++  +   dv +av +a++a   Ws+  +++raa+++k   l+  ++ +e++  ++ +++k++ +a  d va   + + +     +  ++      ++g++  ++ r   G vaai Pfnf  +    +   al mGn+vv kPs+ + l+      ++++aGlP gv n+v +  + v+ + + + d+ a++f Gs +v     k v+++     +  r +   G k+  ++ +  +v+ ++a +  +     Gq+c aas l  v +s  ++    +++  ++ +  v ++         +   + mg+vid+ s+++i ++ie++ ++ +e  +l G ++ + +G+++ Pt+++  +P+e k+++ee+fGPvl+v   + + +++ +++ +++  ++ + ++
  MMETSP1061-20121228|23603_1  19 STNEYMDVINPADS-KTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALV-QEHAQELAELIVQENGKNITEALAD-VAKGNETVEWACSLPQLAVGNT--LRVSGQVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALvMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGTRACVE-ALVDHTDVQAVTFVGSSPVA----KIVSQRCRALPEPKRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLtVDESEERKHGngDSVSVSAGDALVQKIvsaaskikaGSGPGEMGPVIDRASYDRILSYIEHSEQKGAE-ILLDGREWKKDEGFWIGPTILKHTNPEEdKTLSEEVFGPVLSVL--PVSSWEQAVDI-ENSNPFGNAASI 428
                  689999*****986.579***************************************87766.5677899999999************.9999999999998876555544..6899*********999***********877655444445449***************9999*******************976665.5567999*********9975....6778888888888899999999*************9998877777789*********9872445544433211222222222222222444555554555678*********************98843.356677899****************9752799**********85..77889998885.555566655555 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.2   1.5e-21   4.4e-19       2     431 ..       8     438 ..       7     449 .. 0.81

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 1.5e-21
    TIGR02278   2 qsylsgewetgages.vevadaitGevlarvs.seGldlaaavayarevGgkalraltfheraaklkalakylserkeelyalaat.tGatrrdnavdidGgigtlftyaskgrrelPdadlliedelealskdgsfqgrhiltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivGs...vgdlldhldsrdvvaftGsaataeklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalv.......eavlealkarl.akvklGdPr....eedvklGplvsveqredveaavaallaagaevrlgdpeeld..GaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtadpevarq 431
                  + y++g ++ ++++  ++v + ++ + + rv+ s+  d+ +ava a++   ++    t+++raa l ++ + ++e+ +el +l  +  G +  ++  d+  g  t+   +s     lP+   l+ ++++ +s + s + r    p  Gv   i  fnfP    +  +  a++ G  +++kP+       +    l++++g lP+G ++++ G+   v  l+dh d +  v+f Gs   a+ + ++   l +  r +a   + n  v  ed      e+d  + +i   ++  aGq+c a   +l   + +       ++v+ +  + l +k++    +    +   ++Gp++++   + +   +++  ++gae+ l ++e  +  G ++ Pt+l+ ++pe d+  + e fGPv ++l+ ++ ++av +        +as+ t+    a+ 
  MMETSP1061-20121228|23603_1   8 DNYICGGFVPPSTNEyMDVINPADSKTIGRVAlSAACDVDDAVASAKK-AFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQeNGKNITEALADVAKGNETVEWACS-----LPQ---LAVGNTLRVSGQVSCTDRR--DP-LGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAG-LPDGVFNMVQGTracVEALVDHTDVQ-AVTFVGSSPVAKIVSQRCRALPEPKRCTALGGAKNHLVALEDC-----EVDGAAADITVSFAGCAGQRCMAASVLLTVDESEerkhgngDSVSVSAGDALvQKIVSAASKikagSGPGEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKKdeGFWIGPTILKHTNPEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADW 438
                  5799999999887665999999999999999758899*******9875.6799999*************************98765278899999*****99999865554.....665...3457888889888888775..45.588889********999999999************9988766666666666655.7*********9633377899999987.699*********9999999999999999999999999877776.....68999999***************998886544331112222456544434333666655443111133468*****************************988754335******************************************99888878888888877666665 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.8   2.7e-11   7.9e-09      84     466 ..      44     419 ..      38     453 .. 0.70

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.7e-11
    TIGR02288  84 vdtdalleaakkalkgwrdaGararvgvcleilqrlnkrslelahavmhttGqafmmafqaGGphaqdrGleavayayremsripetavwekpqGkkdplklekrfeivprGialvigcstfptwntypGlfaslatGnavlvkphpgailplaltvkvarevlaeaGfdpnlvalaaeeaeeevaqrlaldpavrivdftGsnafGewleqnar...qaqvytekaGvntviiestd.dlkavlrnlafslslysGqmctttqailvprdGirtdegrksydevaadlaaa.idkllgddarava.....llGaiqs....edtvariaearalG.evlldskklehpefpdarvrtplllkv.daadeaayaeerfGpiafvvavddaahavelarr 466
                  +d d  +++akka ++w     + r++v ++    +++++ ela+ +++  G+    a+         +G e+v +a       p+ av +  +     +  + r +  p G+   i    fp       +  +l  Gnav++kp ++    + lt++ a +++ +aG+   +  ++  +      ++l  + +v+ v f Gs+   + + q+ r   + +  t + G  + ++   d ++ + +++++ s++  +Gq c ++  +l   +  + ++g+   d v+ + + a ++k+++  ++  a      +G + +    + +++ i++++++G e+lld ++ ++ e  +     p +lk  +  ++++++ee+fGp+  v+ v + ++av++ + 
  MMETSP1061-20121228|23603_1  44 CDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALAD-----VAKGNETVEWACSL----PQLAVGNTLRVSG-QVSCTDRRD--PLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEK----VPLTMRYAADLFQKAGLPDGVFNMVQGT--RACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRalpEPKRCTALGGAKNHLVALEDcEVDGAAADITVSFAGCAGQRCMAASVLLTVDESEERKHGN--GDSVSVSAGDAlVQKIVSAASKIKAgsgpgEMGPVIDrasyDRILSYIEHSEQKGaEILLDGREWKKDE--GFW-IGPTILKHtNPEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENS 419
                  7888888888888888888888888888888888888888888888888888888777642.....23577777776543....3333333222211.122333322..4455555555566666666667789***********997....467899***********76666666554..78899**************************99333357899999997777765554899*******************998877655554444443..344444444432455655555444411222344555501115566668999999999999999987764..444.4666666505567789*********************998765 PP

>> TIGR02518  EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.3e-08   2.7e-05       9     195 ..      45     227 ..      39     237 .. 0.79
   2 ?   -1.5   0.2      0.63   1.9e+02     166     225 ..     284     343 ..     267     350 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 9.3e-08
    TIGR02518   9 evrnlirsakvaqkklaalsqeqidkivkaivdaaeenavklakmaneetGfGkvedkvlknklaakivydsikdmktvG.ileedkekkvievavpvGvvaglvpstnptstaiyktlisikarnaivlsphpaakkciietvklirkaaekaGapegiiasltvptiegtnelmknkdtslilatG 195
                  +v + + sak+a    ++ + +q   ++       +e+a++la+  ++e G  ++e      k   ++ + +     +vG  l+   +   ++   p+Gvva++vp   p    ++   i++  +na+vl p  +       t++  ++  +kaG p+g+  +++  t  + + l+ + d+  +   G
  MMETSP1061-20121228|23603_1  45 DVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGnTLRVSGQVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPL----TMRYAADLFQKAGLPDGVFNMVQ-GTRACVEALVDHTDVQAVTFVG 227
                  6778899999999999999999999**************************99998766555555666677766777777356677777899999***********************************99765554....55666666677899999887654.5566677777777776665555 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.63
    TIGR02518 166 giiasltvptiegtnelmknkdtslilatGGeamvkaayss.GkpaiGvGpGngpayieks 225
                    +a+   +t++ ++e    +  s+ + + G+a+v+   s+  k   G GpG+    i+++
  MMETSP1061-20121228|23603_1 284 RCMAASVLLTVDESEERKHGNGDSVSV-SAGDALVQKIVSAaSKIKAGSGPGEMGPVIDRA 343
                  445555667787777765544555555.567788877666515778899999988888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.68u 0.15s 00:00:00.83 Elapsed: 00:00:00.67
# Mc/sec: 1081.52
//
Query:       MMETSP1061-20121228|23630_1  [L=690]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (690 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       399  (0.0972696); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.11s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 2396.64
//
Query:       MMETSP1061-20121228|23624_1  [L=1089]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.051   10.0   0.0      0.088    9.2   0.0    1.3  1  TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family


Domain annotation for each model (and alignments):
>> TIGR03075  PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   2.2e-05     0.088      56     115 ..     539     601 ..     534     621 .. 0.75

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 2.2e-05
    TIGR03075  56 gkqrgqeaqplvvdgvmYvttsyskvyAld....aktgkelWkyeaklpedvlpvaccdvvnRG 115
                  +++rg++ +++v  ++mYv ++y+++        ++  ++l+++ +++ ++v + + cd+  + 
  MMETSP1061-20121228|23624_1 539 EQKRGKDNKAVVASNIMYVVGQYPRFLRAHwkflKTVVNKLFEFMHEIHPGVQD-MACDTFLKI 601
                  579*********************775544233245567899999999999999.888876555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1089 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.40
# Mc/sec: 3593.40
//
Query:       MMETSP1061-20121228|23655_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|23634_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.4e-05   20.7   0.5    0.00027   18.7   0.0    1.9  2  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.3     0.037   1.5e+02      97     229 ..     156     176 ..      47     199 .. 0.49
   2 !   18.7   0.0   6.7e-08   0.00027      44     103 ..     244     303 ..     224     306 .. 0.89

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.037
    TIGR03354  97 yeirvslaagaapafdelaptpetlvtaalqqvsseaseedlddslteagegaaprpapqaasldPlkaldqepasaadlddgalsaelaeevaealpadlasidaestlepelaplpaaqpapapqeqeqas 229
                  + ++                                                                                                                +p a+++p+ + ++ ++
  MMETSP1061-20121228|23634_1 156 VAVA----------------------------------------------------------------------------------------------------------------VPVASSRPTRNRKPPST 176
                  2222................................................................................................................22223333322222222 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 6.7e-08
    TIGR03354  44 lvssrhaeiekrdgaylltdl.StnGvflnnsgsplrrgepvrL.eqgdelrlGdyeirvsl 103
                   vs +h++ e + g+++ td+ StnG+++n  g+  ++  p+ L e g++++ G+ +++v l
  MMETSP1061-20121228|23634_1 244 EVSTSHGRFELKAGKFYYTDVaSTNGTRIN--GEECEANVPYELaETGTTIVAGQTVMKVTL 303
                  59*****************9659*******..9999**99***944699*******999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.16s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 1761.77
//
Query:       MMETSP1061-20121228|23681_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 197.98
//
Query:       MMETSP1061-20121228|23672_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-75  249.8   9.2    1.1e-74  249.5   6.4    1.1  1  TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase
    1.2e-09   35.9   4.2    1.8e-09   35.3   2.9    1.2  1  TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase
    1.2e-05   22.7   0.6    1.9e-05   22.1   0.4    1.4  1  TIGR01475 ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase


Domain annotation for each model (and alignments):
>> TIGR01473  cyoE_ctaB: protoheme IX farnesyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.5   6.4   8.2e-78   1.1e-74       2     280 ..     132     411 ..     131     412 .. 0.97

  Alignments for each domain:
  == domain 1    score: 249.5 bits;  conditional E-value: 8.2e-78
    TIGR01473   2 aylqltKprlislvlltalagmllasksaevnlllllltllgttlaaasanalNmvidrdiDkkMkRTknRplvsgkvspsealafglllgvlgvvlLallvnllaallvlagiflyvvvYTlllKrktilniviGglaGavPpliGwaAvtgs..isleallLflilflWqppHfwaLalkikddYkaagipmlpvvkgeeltkaqilly.llvlllvslllallgatgllylivalllnalllalalklyrkkedrkkarklFvfSllylallllallid 280
                  +ylql K +l++lv++t+lag++ a +++  +++l++  ++gt+l++ sa+alN++++rd D++MkRT++Rplv+g ++++ea + +++ g+ g++lLa+++ +++all+l++i ly+ +YT  +K+++++n+++G+++Ga+Pp++Gw+A+t    ++l a+lL   l+ Wq+pHf+aL+++++ dY++ g++ml++ + +   +++++l+  + l ++ ++ +l+g+t+ ++++  ++ln + l++a+++ r++++ + ark+F+ Sl+yl+  l++ l++
  MMETSP1061-20121228|23672_1 132 SYLQLGKAKLSALVVTTSLAGFVAAGGPLYEQAPLAASCVVGTALCSFSAAALNQIYERDRDALMKRTQQRPLVTGALTVREAKVAAMAWGIGGTTLLAVGTDPVTALLGLSNIGLYAGLYT-YMKPRSVYNTWVGAVVGAIPPVMGWTAATSGsiLDLDAILLGSTLYYWQLPHFFALSYMYRVDYERGGFCMLSSHEVDGERTSAVMLRnAAYLSAIPFVSTLAGVTSSMFALEGIALNSYALWVAYRFRRERTNAN-ARKVFLTSLWYLPSWLVLFLLH 411
                  69***************************9999*****************************************************************************************.*************************9998532379*******************************************9999*****99999****************************************7777.*************999999887 PP

>> TIGR01474  ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   2.9   1.3e-12   1.8e-09      28     250 ..     153     381 ..     139     401 .. 0.67

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.3e-12
    TIGR01474  28 llaaeaasllpalllLllftvGallmrgaGCviNDlvDrdlDkkVeRtksRPlasgavsvkqalllllvlllvalgvl.lllnkltillgvaslal.vliYPllKRitylpQlvLglafswgvllgfaavag..klstaaivLylasilWtlgYDTiyamqDkedDakigvks.tallfgdktksvlailyaltilllalagliag..lgavyylalavaalllvsqiak 250
                   +aa    l++++ l +  +vG++l + +  ++N + +rd D+  +Rt++RPl++ga++v++a++ +++  + + ++l +  +++t llg+  + l + +Y ++K  + +   v ++      ++g++a++    l+  ai+L  + + W l +    +++ + d ++ g    ++   + +  s++++  a+ + ++ ++ + ag   +++++ ++a+  + l   +  
  MMETSP1061-20121228|23672_1 153 FVAAG-GPLYEQAPLAASCVVGTALCSFSAAALNQIYERDRDALMKRTQQRPLVTGALTVREAKVAAMAWGIGGTTLLaVGTDPVTALLGLSNIGLyAGLYTYMKPRSVYNTWVGAVVGAIPPVMGWTAATSgsILDLDAILLGSTLYYWQLPHFFALSYMYRVDYERGGFCMlSSHEVDGERTSAVMLRNAAYLSAIPFVSTLAGvtSSMFALEGIALNSYALWVAYRF 381
                  55665.46777788888899*******************************************9876555444443331456789********9772569*****9888877776677778899***9988765577778877777788998877777777777766666432122233333334444444445555555544444112333344555555555555555 PP

>> TIGR01475  ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.4   1.4e-08   1.9e-05      40     172 ..     171     303 ..     131     415 .. 0.66

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.4e-08
    TIGR01475  40 lilvalvsaRtaamavnrlideeiDakNPRtknrelvsGkiskkeavtliilslil.fliasyflNklafiLsp.vvllvliiypylKRftalahlvLglvlglavlagavavigeisillvavllvigvvfwva 172
                   + +al s   +a a n++ +++ Da   Rt++r+lv+G++  +ea   +++  i    + ++   ++  +L    + l +  y y+K  +++  +v ++v ++ +++g+ a +      l a+ll+ ++  w  
  MMETSP1061-20121228|23672_1 171 VVGTALCSF--SAAALNQIYERDRDALMKRTQQRPLVTGALTVREAKVAAMAWGIGgTTLLAVGTDPVTALLGLsNIGLYAGLYTYMKPRSVYNTWVGAVVGAIPPVMGWTAATSGSILDLDAILLGSTLYYWQL 303
                  445555554..45578*****************************98766655443133334444444433333033467789*************99999999*******998776668889999988888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1787.20
//
Query:       MMETSP1061-20121228|23702_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.11s 00:00:00.18 Elapsed: 00:00:00.19
# Mc/sec: 250.08
//
Query:       MMETSP1061-20121228|23713_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1475.88
//
Query:       MMETSP1061-20121228|23737_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.6    2.3  11.4        4.7    2.2   7.9    1.0  1  TIGR03839 termin_org_P1: adhesin P1


Domain annotation for each model (and alignments):
>> TIGR03839  termin_org_P1: adhesin P1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   7.9    0.0011       4.7     196     275 ..       3      83 ..       1      88 [] 0.64

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0011
    TIGR03839 196 qrglqkqkteskatessfgatfrlkvksavadaaksgekl.....aeatassassGsassaarggasadtkakalkvevekgsds 275
                  q++ q+q+ e++a ++  ++  +  +ks+v  ++k+ ek      +e + ss+s+ +a+s+a   a      +++  + +k+++ 
  MMETSP1061-20121228|23737_1   3 QQQQQQQQQEKEAETAEPEPEPQAPKKSPVVASPKELEKPkvnktSEEAPSSTSTATATSTATSTA----TSNSTSTLFKKEQQQ 83 
                  5667778888888888889999999**********9988653333555556666666666555444....444455554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       243  (0.0592394); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|23742_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 566.45
//
Query:       MMETSP1061-20121228|23746_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1061-20121228|23759_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-08   31.5   0.0    4.1e-08   30.8   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    2.1e-06   25.2   0.0    3.7e-06   24.4   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    0.00054   17.3   0.0    0.00089   16.6   0.0    1.3  1  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
     0.0015   16.9   0.0     0.0038   15.5   0.0    1.7  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family
     0.0027   15.8   0.1     0.0064   14.6   0.1    1.6  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
      0.003   14.5   0.0     0.0047   13.9   0.0    1.3  1  TIGR00536 hemK_fam: methyltransferase, HemK family
  ------ inclusion threshold ------
      0.022   11.9   0.0      0.038   11.1   0.0    1.3  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific


Domain annotation for each model (and alignments):
>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   6.9e-11   4.1e-08     160     235 ..     184     264 ..     168     275 .. 0.84

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 6.9e-11
    TIGR00406 160 d.kkviDvGcGS.GiLsiaalklgaakvvavDiDplavesarkNlelNqvsdllqvklenleq...kiegkaDvivaNilA 235
                  +  +v+D+G+G   i +i a+ lga+kv+a++ +p a e ar+ +++ + +d++ v    +++   +   kaD iva i+ 
  MMETSP1061-20121228|23759_1 184 GaSTVLDLGTGPfAIFAIKAAELGAKKVYAIEANPKAAEMARETIRKKGFEDIITVLEGFSTDvslPDGDKADLIVAEIIG 264
                  3579*******658***************************************999988755522256789******9986 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   0.0   6.3e-09   3.7e-06      88     162 ..     184     260 ..     168     261 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 6.3e-09
    TIGR03534  88 eklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.veflksdlleal.eekgkfdlivs 162
                   + +vlDlgtG  aI    a+el   kv+a++ +++A+++ar+ +++ g ++ +++l++  ++    + +k dliv+
  MMETSP1061-20121228|23759_1 184 GASTVLDLGTGPFAIFAIKAAELGAKKVYAIEANPKAAEMARETIRKKGFEDiITVLEGFSTDVSlPDGDKADLIVA 260
                  3569*************99*********************************9999999887766688999****97 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   1.5e-06   0.00089      15     134 ..     112     232 ..     107     263 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 1.5e-06
    TIGR03704  15 dearllvdaartaeelaalverrvaGlplehvlGwa.efrGlriavdpgvfvprrrteflvdeavalakersarlvvvdlccGsGavgaalaaaldavelhaadidpaavrcarrnladaG 134
                   ea+  v++a t++ ++ +  +  a   l+ +   a +f G   +    +   + rt ++ +  + ++ + +++ +v dl  G  a+ a  aa+l a +++a++ +p a + ar  + ++G
  MMETSP1061-20121228|23759_1 112 SEATTTVTTATTTTTVTPIQAKWKAVDGLNTMEESAkNFVGFDASSYQAMINDQSRTPMFYKVMADRIDDGKGASTVLDLGTGPFAIFAIKAAELGAKKVYAIEANPKAAEMARETIRKKG 232
                  5888889999999999999988888888888877663799999999999999999***999999999999999********************************************9998 PP

>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   6.6e-06    0.0038       2      52 ..     188     239 ..     187     247 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 6.6e-06
    TIGR01444   2 viDiGAn.iGdvslvfaravaegrviafEPlpdllekleenvklnnlkn.vkl 52 
                  v+D G      +++ +a+++a+ +v+a+E++p+++e ++e ++++++++ +++
  MMETSP1061-20121228|23759_1 188 VLDLGTGpFAIFAIKAAELGAK-KVYAIEANPKAAEMARETIRKKGFEDiITV 239
                  5666643257899999*****9.*********************999886655 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.1   1.1e-05    0.0064      22     102 ..     187     270 ..     178     282 .. 0.68

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.1e-05
    TIGR02469  22 vllDiGaGtGsv.tieaarlvpkgrvyaierneealelieeNlrrfgvsnieivegdap.kaeedsleeadavf..vgGsgkklk 102
                  ++lD G G   + +i aa+l    +vyaie n++a+e+ +e +r+ g+++i +v +++  ++   + ++ad ++  + Gs + ++
  MMETSP1061-20121228|23759_1 187 TVLDLGTGPFAIfAIKAAELGA-KKVYAIEANPKAAEMARETIRKKGFEDIITVLEGFStDVSLPDGDKADLIVaeIIGSIASEE 270
                  6778776655442444444443.59*********************999998887777754444445666666533445555555 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     8e-06    0.0047     113     173 ..     183     243 ..     168     261 .. 0.80

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 8e-06
    TIGR00536 113 eplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaeklkleerveliqsn 173
                  + +  +lDlgtG  +I    A+e+  ++v+a+   ++a ++a+e ++k ++e+ + ++ + 
  MMETSP1061-20121228|23759_1 183 KGASTVLDLGTGPFAIFAIKAAELGAKKVYAIEANPKAAEMARETIRKKGFEDIITVLEGF 243
                  556889**********8888999999**************************988877654 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   6.5e-05     0.038     116     194 ..     178     259 ..     164     261 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 6.5e-05
    TIGR03533 116 ll.ekeevkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieeyeledrveliqsdlfe.ale.gkkydliv 194
                   + + +  ++vldl tG   +  + a +    +v a++   +a e+a+e i++ ++ed ++++++   + +l+ g+k dliv
  MMETSP1061-20121228|23759_1 178 RIdDGKGASTVLDLGTGPFAIFAIKAAELGAKKVYAIEANPKAAEMARETIRKKGFEDIITVLEGFSTDvSLPdGDKADLIV 259
                  5545667789*******99998888888999****************************99987632221232256666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1908.19
//
Query:       MMETSP1061-20121228|23788_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 2115.95
//
Query:       MMETSP1061-20121228|23810_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   13.1   5.4     0.0042   12.9   3.7    1.1  1  TIGR03658 IsdH_HarA: haptoglobin-binding heme uptake protein HarA
  ------ inclusion threshold ------
       0.19    8.6   4.6       0.11    9.4   0.6    1.9  2  TIGR00155 pqiA_fam: integral membrane protein, PqiA family


Domain annotation for each model (and alignments):
>> TIGR03658  IsdH_HarA: haptoglobin-binding heme uptake protein HarA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   3.7   2.1e-06    0.0042     191     286 ..     157     252 ..     122     264 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.1e-06
    TIGR03658 191 dgtqelkivsstqiddgeetnydytklvfakpiyndpslvksdtndavvtndqsssdasnqtntntsnqnistinnannqpqattnmsqpaq.pkss 286
                      e +++ss+ +  g +   d   + + k + nd  +   d n  +  n  ss +  n +++n s+ n  t  n+    q ++ +s+    pk s
  MMETSP1061-20121228|23810_1 157 KCRAETHVLSSSSMSSGCDVSNDIIEITIPKNVSNDRMIADDDNNIEIPNNSSSSNNNNNISDSNISDANSITETNTSPS-QESSGISRMVTpPKRS 252
                  5567899*****************************98888777777776666677777788999999987776655432.4444444443314555 PP

>> TIGR00155  pqiA_fam: integral membrane protein, PqiA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.1     0.026        52     232     251 ..      59      78 ..      24      82 .. 0.80
   2 ?    9.4   0.6   5.1e-05      0.11     215     242 ..     133     160 ..     114     170 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.026
    TIGR00155 232 vCPrCssklrvrrrlslqkt 251
                   CPrC  k  + + + l+++
  MMETSP1061-20121228|23810_1  59 DCPRCGFKTTTTDYEYLKMC 78 
                  58888888887777777666 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 5.1e-05
    TIGR00155 215 lrvCsaChftilpkqkivCPrCssklrv 242
                   r+Cs+C +++  ++ + CP+C sk r 
  MMETSP1061-20121228|23810_1 133 ERICSGCQVALESNEWQFCPKCGSKCRA 160
                  699********************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.10s 00:00:00.28 Elapsed: 00:00:00.34
# Mc/sec: 1036.50
//
Query:       MMETSP1061-20121228|23841_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 364.11
//
Query:       MMETSP1061-20121228|23848_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 415.77
//
Query:       MMETSP1061-20121228|23838_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-06   24.0   0.2    9.2e-06   23.0   0.2    1.5  1  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.2   2.2e-09   9.2e-06      66     222 ..     158     314 ..     142     359 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.2e-09
    TIGR00569  66 lasalkptlPkevvgtAilyFkRFy.Lnnsvmeyd.PkiivltcvFlAcKveefnvsieqFvknlket......rekaleevLeyEllliqsLkfsLlvhnPyrPleGFllDiktvlpkleneevlrkiadkflnevlltDvvll.ytPsqiaLaailseasrlvl 222
                  + ++++  l +evv+tA+++  R+  + + +++ +  + + +tc++l  K +e+        k   +t         +l e+ + E++++q L+++  vh P        l +k  l+ l +ee   +   +f++e    D +++ y Ps iaLaa+l + +rl+ 
  MMETSP1061-20121228|23838_1 158 VVDHFD--LNREVVSTAMSHLDRYLgVYDGIVDKNlFQLLAMTCLYLSIKLNEYKHLLIPGSKSSMDTilqlsrGFFTLKEMEKMEYEVLQRLRWH--VHPPTAQ-----LFVKHFLFFLSVEEHELHDLAQFMIELSVMDYFFVsYKPSEIALAALLNSMDRLGK 314
                  567888..99*************8644566666652688899************7432222222222223222223578899999**********8..6776543.....3378888888887776666669*********988779************9999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.49
# Mc/sec: 1179.82
//
Query:       MMETSP1061-20121228|23866_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1385.89
//
Query:       MMETSP1061-20121228|23859_1  [L=1546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       512  (0.124817); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.01u 0.17s 00:00:01.18 Elapsed: 00:00:00.72
# Mc/sec: 2834.10
//
Query:       MMETSP1061-20121228|23888_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-30  104.0  31.8    5.7e-13   46.2   2.8    3.2  3  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    7.2e-21   71.6  25.4    6.6e-08   28.7   0.4    4.1  4  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
      3e-10   37.9  28.9    1.4e-06   25.8   0.8    5.8  6  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    2.4e-08   31.6  16.5    0.00079   17.0   1.7    4.4  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    1.6e-07   27.8  13.4    0.00048   16.3   0.0    3.1  3  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   2.8   6.9e-16   5.7e-13     127     214 ..       4      92 ..       2      97 .. 0.95
   2 !   31.9   7.0   1.5e-11   1.2e-08     111     229 ..     221     351 ..     192     374 .. 0.65
   3 !   36.0   2.9   8.4e-13   6.9e-10     126     215 ..     376     466 ..     358     508 .. 0.85

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 6.9e-16
    TIGR00990 127 aaklkekGnkayrnkdfdkaielyskalllk.edPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadal 214
                  aa++k +Gn a + k+f +ai  y+ka+ l   + vy+snr+a y + +d ++ +ed+   ++l+p++ k   r+ +a   l +y+d++
  MMETSP1061-20121228|23888_1   4 AAEFKAAGNAALQAKKFSEAIANYTKAINLDgSNHVYFSNRSAAYLSKGDGNNALEDANSCIALNPQFAKGYSRKGAALHALKRYNDSI 92 
                  8999*************************973679**************************************************9976 PP

  == domain 2    score: 31.9 bits;  conditional E-value: 1.5e-11
    TIGR00990 111 dessvvnlseeerk.....kyaaklkekGnkayrnkdfdkaielyskalllkedP.vyysnraacynaladlekvvedttaaleldp.......dyvkalnrranaydqlgkyadalldltassliddfrde 229
                  +e++  +ls eer+     k a   ke+Gn  y++k+f++a+  y+ a+ +      +  n+aa y ++ +++  +e+  +a+e+ +       d +kal r a ay++ g  a+a+ ++  ss  + + ++
  MMETSP1061-20121228|23888_1 221 EEEDWSKLSPEEREkketqKKARLKKEEGNALYKSKKFEEALAAYDEAIAIDSTSmTFLLNKAAVYFTMKKYDDCIEECNKAVEVGKenfapfeDRSKALTRAARAYQKKGDLANAI-EMCKSSQLESYSKD 351
                  333444444444431111134555589***********************9876526999***********************98641122233579*****************997.45555544444433 PP

  == domain 3    score: 36.0 bits;  conditional E-value: 8.4e-13
    TIGR00990 126 yaaklkekGnkayrnkdfdkaielyskalllke.dPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadall 215
                   a + k++Gn ++r+k+f +ai+ y+ a+   + d     n++a    + d++    +  +aleldp+y+ka  r+ +    +  y +a+ 
  MMETSP1061-20121228|23888_1 376 KAQEAKQRGNDFFREKKFPEAIKEYEEAVKRAPnDAAIRNNLSAALTKIMDFNGAKVQVEKALELDPKYTKAWARKGDIEMAFKEYHKAME 466
                  47788************************8765388999***************999**********************999999999985 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   1.0   3.8e-07   0.00031     703     804 ..       4     106 ..       1     123 [. 0.57
   2 !   18.9   0.2   7.2e-08   5.9e-05     607     669 ..     248     310 ..     235     313 .. 0.89
   3 !   20.8   3.4     2e-08   1.6e-05     634     739 ..     316     413 ..     308     423 .. 0.89
   4 !   28.7   0.4   8.1e-11   6.6e-08     174     245 ..     426     499 ..     414     520 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.8e-07
    TIGR02917 703 algfeleGdlalrqkdykaAiqaykkalkrapss.qtvikLaeallasgntaeAaktleawLkehpkdavlrtalAelylaekdedkAakhYqtvvkkapdna 804
                  a+ f+  G+ al+ k++ +Ai++y+ka+++  s+     +  +a+l +g+ ++A + +++    +p+ a+  +  +  + a k+++  +++Y++ ++k p++a
  MMETSP1061-20121228|23888_1   4 AAEFKAAGNAALQAKKFSEAIANYTKAINLDGSNhVYFSNRSAAYLSKGDGNNALEDANSCIALNPQFAKGYSRKGAALHALKRYNDSIAAYNEGLEKFPNDA 106
                  4555556666666666666666666666666666333344555566666666666666666666666666666666666666666666666666666666655 PP

  == domain 2    score: 18.9 bits;  conditional E-value: 7.2e-08
    TIGR02917 607 lgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnt 669
                   g+a+ + k++++a++++ +++++++ s++ ll  a+vy ++k+++  +++  ka+e  ++n+
  MMETSP1061-20121228|23888_1 248 EGNALYKSKKFEEALAAYDEAIAIDSTSMTFLLNKAAVYFTMKKYDDCIEECNKAVEVGKENF 310
                  57889999*************************************************988775 PP

  == domain 3    score: 20.8 bits;  conditional E-value: 2e-08
    TIGR02917 634 salalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllkelekqkpkaalgfeleGdlalrqkdykaAiqaykkalkrapssqtv 739
                    +al ++a +y+ + + a+A++  k++ +l++   + q+ll +L+le+k+ +       +l+ q + +a+  ++ G+  +r+k++++Ai++y++a+krap+++++
  MMETSP1061-20121228|23888_1 316 RSKALTRAARAYQKKGDLANAIEMCKSS-QLESYSKDTQRLLKSLELEKKKKD-------KLDYQDEGKAQEAKQRGNDFFREKKFPEAIKEYEEAVKRAPNDAAI 413
                  568999****************999988.77777789***********99987.......69****************************************9766 PP

  == domain 4    score: 28.7 bits;  conditional E-value: 8.1e-11
    TIGR02917 174 kldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaia..allalatilleegefee 245
                  ++++a+  v+++L+ dpk ++A++ kgd++++ +++ +A+++y+k +e++ n++a  + l ++t++++ g+   
  MMETSP1061-20121228|23888_1 426 DFNGAKVQVEKALELDPKYTKAWARKGDIEMAFKEYHKAMESYKKGLEIDSNNAAckEGLQKVTVQINYGRSQM 499
                  7899**********************************************999862145788888887776554 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   0.1     0.012       9.9     134     169 ..       3      38 ..       1      43 [. 0.86
   2 !    8.6   0.2   0.00031      0.26      39      99 ..      46     106 ..      42     109 .. 0.94
   3 !    9.2   0.9   0.00021      0.17      19      98 ..     230     309 ..     226     313 .. 0.90
   4 ?    0.1   0.9      0.12     1e+02     167     214 ..     315     363 ..     311     383 .. 0.50
   5 !    7.8   0.2   0.00056      0.46      76     104 ..     388     416 ..     371     423 .. 0.78
   6 !   25.8   0.8   1.8e-09   1.4e-06      33     100 ..     413     480 ..     411     512 .. 0.92

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.012
    TIGR02521 134 parsyeNaglcalkagdtekaekyltralkidpkrp 169
                  +a+ ++ ag  al+a+++ +a +  t+a+++d ++ 
  MMETSP1061-20121228|23888_1   3 TAAEFKAAGNAALQAKKFSEAIANYTKAINLDGSNH 38 
                  67789999999******************9998876 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00031
    TIGR02521  39 leYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                  ++Yl +gd ++A e+ +  ++l+p+ a+ ++  + ++  l++ +   ++++++l+  pn++
  MMETSP1061-20121228|23888_1  46 AAYLSKGDGNNALEDANSCIALNPQFAKGYSRKGAALHALKRYNDSIAAYNEGLEKFPNDA 106
                  78****************************************************9999886 PP

  == domain 3    score: 9.2 bits;  conditional E-value: 0.00021
    TIGR02521  19 kesskkkdrekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnn 98 
                  +e+ +kk+ +k a+ + + + + ++++++e+A ++ ++A+++d+ +    l  A +y ++++ +   e+ +kA+++ ++n
  MMETSP1061-20121228|23888_1 230 PEEREKKETQKKARLKKEEGNALYKSKKFEEALAAYDEAIAIDSTSMTFLLNKAAVYFTMKKYDDCIEECNKAVEVGKEN 309
                  56778888899999999********************************************9999999999999887776 PP

  == domain 4    score: 0.1 bits;  conditional E-value: 0.12
    TIGR02521 167 krpesllelaelklkkgqyaeAralleryq.qtveqtaesLwLgiriak 214
                  +r+++l   a+ + kkg++a+A ++ +  q +++ ++ + L+   +++k
  MMETSP1061-20121228|23888_1 315 DRSKALTRAARAYQKKGDLANAIEMCKSSQlESYSKDTQRLLKSLELEK 363
                  4556666666666666666666555443321122233333322222222 PP

  == domain 5    score: 7.8 bits;  conditional E-value: 0.00056
    TIGR02521  76 qqlgelekAeesfrkAltlkpnngdvlNN 104
                   ++++  +A +++++A++ +pn+++++NN
  MMETSP1061-20121228|23888_1 388 FREKKFPEAIKEYEEAVKRAPNDAAIRNN 416
                  55666778899999999999999999999 PP

  == domain 6    score: 25.8 bits;  conditional E-value: 1.8e-09
    TIGR02521  33 irvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                  ir +L ++  +  d++ Ak ++ekAleldpk+ +a++  + + +  +e +kA es++k+l+++ nn++
  MMETSP1061-20121228|23888_1 413 IRNNLSAALTKIMDFNGAKVQVEKALELDPKYTKAWARKGDIEMAFKEYHKAMESYKKGLEIDSNNAA 480
                  66677777778889999************************************************986 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2   1.4e-05     0.012      59     116 ..      11      68 ..       3      76 .. 0.90
   2 ?    1.4   0.1     0.061        50      58      76 ..      78      96 ..      65     106 .. 0.80
   3 !   17.0   1.7   9.6e-07   0.00079      27     135 ..     251     358 ..     241     360 .. 0.91
   4 ?   -1.6   0.0      0.52   4.3e+02      66     105 ..     391     430 ..     384     444 .. 0.68
   5 !    7.1   0.0    0.0011       0.9      47      87 ..     440     480 ..     426     497 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-05
    TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieia 116
                  + +  ++k+++eAia+Y+ a  ld ++++ +  ++  +l +g+ ++Al++ + +i++ 
  MMETSP1061-20121228|23888_1  11 GNAALQAKKFSEAIANYTKAINLDGSNHVYFSNRSAAYLSKGDGNNALEDANSCIALN 68 
                  67788899***************************************99998888875 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.061
    TIGR02552 58 LaaclqalkeyeeAiaaYa 76
                  +a+l+alk+y++ iaaY 
  MMETSP1061-20121228|23888_1 78 KGAALHALKRYNDSIAAYN 96
                 5899**************7 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 9.6e-07
    TIGR02552  27 nlyqqgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeamles 135
                  +ly+++k+eeA+ ++   +a+d t+  ++l  aa++  +k+y++ i+    a+ + +++ +p+  +++ l+   +  + + +L+ aie++++++  + +++  + +l+s
  MMETSP1061-20121228|23888_1 251 ALYKSKKFEEALAAYDEAIAIDSTSMTFLLNKAAVYFTMKKYDDCIEECNKAVEVGKENFAPFEDRSKALTRAARAYQKKGDLANAIEMCKSSQ-LESYSKDTQRLLKS 358
                  79****************************************************************************************9877.66666666666655 PP

  == domain 4    score: -1.6 bits;  conditional E-value: 0.52
    TIGR02552  66 keyeeAiaaYalaaaldlddprpvyhaaecllalgekeeA 105
                  k++ eAi+ Y+ a++  ++d++    ++  l+++ + + A
  MMETSP1061-20121228|23888_1 391 KKFPEAIKEYEEAVKRAPNDAAIRNNLSAALTKIMDFNGA 430
                  6677888888888888888877666666666666555555 PP

  == domain 5    score: 7.1 bits;  conditional E-value: 0.0011
    TIGR02552  47 ldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddpr 87 
                  ldp   k w++ +   +a key +A++ Y+  + +d ++++
  MMETSP1061-20121228|23888_1 440 LDPKYTKAWARKGDIEMAFKEYHKAMESYKKGLEIDSNNAA 480
                  577777888888999****************9999998875 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   5.8e-07   0.00048      87     195 ..       5     113 ..       2     140 .. 0.93
   2 ?    1.7   2.0     0.015        12      95     179 ..     251     335 ..     238     383 .. 0.75
   3 !   15.0   1.2   1.4e-06    0.0012      98     211 ..     389     502 ..     384     544 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 5.8e-07
    TIGR03939  87 relealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelv 195
                   e +a+++Aa ++k++++A++ y k+++ d +n  + +    + + +g+ ++Al+ +++  + +p+ a+ ++ ++ +l a++++ d++aa+++ l+  P++  l k+l 
  MMETSP1061-20121228|23888_1   5 AEFKAAGNAALQAKKFSEAIANYTKAINLDGSNHVYFSNRSAAYLSKGDGNNALEDANSCIALNPQFAKGYSRKGAALHALKRYNDSIAAYNEGLEKFPNDAGLKKGLG 113
                  6789999**********************************************************************************************98887765 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.015
    TIGR03939  95 AaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqq 179
                  A+ ++k++++Al+ y +++  d+++++ ll  a +   ++k+++  ++ ++++e  +++ + +e ++ +l++a +++++ +++ +
  MMETSP1061-20121228|23888_1 251 ALYKSKKFEEALAAYDEAIAIDSTSMTFLLNKAAVYFTMKKYDDCIEECNKAVEVGKENFAPFEDRSKALTRAARAYQKKGDLAN 335
                  666789*************************************999999998888775555555444444444444444333333 PP

  == domain 3    score: 15.0 bits;  conditional E-value: 1.4e-06
    TIGR03939  98 nekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveiltrlgapalaarla 211
                  +ek++++A++ y+++ +r+P+++ ++  l  +l+   + + A+ +++++ e +p+  +    ++ +  a +++ +a++++++ l+ + +n     +l ++ ++++    +   +
  MMETSP1061-20121228|23888_1 389 REKKFPEAIKEYEEAVKRAPNDAAIRNNLSAALTKIMDFNGAKVQVEKALELDPKYTKAWARKGDIEMAFKEYHKAMESYKKGLEIDSNNAACKEGLQKVTVQINYGRSQMTEE 502
                  589***************************************************88877777999*************************999999999999888665433322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.40
# Mc/sec: 1864.35
//
Query:       MMETSP1061-20121228|23906_1  [L=441]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.2    3.1  17.0        5.8    2.9  11.8    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9  11.8    0.0014       5.8     209     424 ..      18     220 ..       5     378 .. 0.54

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0014
    TIGR00934 209 nsedvksdtsadesisslrfdeskekkkstrvpsekfakr.resrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmv.eknvkaakrkkknfkkreanlklfeksry..akksdrneedngnkkdasksneseevslds 424
                  ++edv+ ++ +++ ++        +k++ +rv  e+ + + ++  + ++ + ++ i+ml    + ++  ++k   a+ +++++d++  ++  i+ +i+   s+    + + +++++ +k    + ++  ++++++t+   +a   ++++  + + +++ e+  k++++ ++n +k+e+++   +k+ +  +  +  ++ ++++++  +k+ + + +++ds
  MMETSP1061-20121228|23906_1  18 DEEDVHPNIDRESWFR--------MKHR-SRVEREDHEAKdKKRINNEMDKANQRIKMLE--RDLKKIAKRK---ADDSDSDDDDDLDDTEAIKIEIEELKSQNAQRQAKLDEYEKNKK---WNIDNMFEVKEERTMVNKDAAKANYTSTGHAQSTVTgEQAKKEFEKARQNAEKKEKEKSGAKKASSpaKPAAGPSKPSQTTTTAPPKKSNTDPTEVDS 220
                  4444444444444444........2222.2222222222202222222233333333333..2222222223...33333344444455555666666555555444443333333322...22222333444444444444444433333322222202222223333333333332222222222200222222222222233333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (441 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       384  (0.0936129); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1663.06
//
Query:       MMETSP1061-20121228|23982_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|24030_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.11s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 2185.74
//
Query:       MMETSP1061-20121228|24045_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1741.24
//
Query:       MMETSP1061-20121228|24059_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1245.29
//
Query:       MMETSP1061-20121228|24044_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1614.67
//
Query:       MMETSP1061-20121228|24083_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 491.96
//
Query:       MMETSP1061-20121228|24080_1  [L=489]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (489 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.23
# Mc/sec: 2806.20
//
Query:       MMETSP1061-20121228|24110_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-20   71.6   0.0    2.1e-20   71.0   0.0    1.2  1  TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
    1.8e-20   71.4   0.0    2.9e-20   70.8   0.0    1.3  1  TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
    0.00098   16.3   0.0     0.0015   15.7   0.0    1.2  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
  ------ inclusion threshold ------
      0.039   11.0   0.0      0.063   10.3   0.0    1.2  1  TIGR01366 serC_3: putative phosphoserine aminotransferase


Domain annotation for each model (and alignments):
>> TIGR02326  transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   2.1e-23   2.1e-20      40     359 ..      76     416 ..      69     419 .. 0.76

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 2.1e-23
    TIGR02326  40 irqkllklataeee.ytsvllqGsGtfaveaviGsavpkdgkllvvinGayGkrlaqiaelleipvvvvete..........ekeatnvaevekilaa..dpeithvalvhsetttGilnP...ieavakvakryGkvlivdamssfGgieidiaeleidylissankciqGvPGfgfviakeaelekck.gnarslsldlydqweamek.keGk..wrftsPthvvaafaqallelekeGGvearyqryqanqkllvaelralGfesllddelqsPiitsfksPedsdyefadfyqrlkekGfvi...yPGkvsk...vdtfriGniGevdaadierlvtaieea 359
                  + + l +l ++  +     ++ GsGtf++eav     ++d+++lv+ nG +  r ++i e+ +ip + + ++           + +     v++++a+  ++  + +   h et+tG++ P   i +v++ +++ G   ++d ++s G++  d+++l +d++is+ +k   G    ++v+  e + ek +  +  s+++ l+   ++m++ + G   +  t Pt  ++ f++  +e  k G  e ++ +y+  ++   a l + G+ s+  + +q+P +  ++sP     e  ++ ++ k+ G+ i    P k+ +   ++tfr+G  G  +  die  v+++++a
  MMETSP1061-20121228|24110_1  76 VMRDLNALLKETYNaEKVAIIPGSGTFGMEAVA-RQFATDEHVLVIRNGWFSYRWTEIFEMGDIPKSHTVMKarpidssvdkHQYQYAPCPVDEVVAKiyEERPATLFCAHVETSTGMILPddyIRKVSAAMRDVGGLFVLDCIAS-GTVWADMKDLGVDVVISAPQKGWTGPCCSALVMMSERAQEKMEtTKETSFAMSLKRWSAIMDTyEAGGfgYHTTMPTDALRDFHEISVETLKVGLPELKEAQYELGKQ-ARAVLDERGLTSISAPGFQAPGVLVYHSPAA--TENPEMMTKFKKGGLQIamgVPWKLDEpegMKTFRLGLFGLDKMGDIEGTVNTLTSA 416
                  5555666665555524455789********975.67899**********************9999765443311111111011222333456666664223334456678*********9955566677778999*********99.**************************999**99877766665414567899999887778865245652256799**************9999988888888887665.578899***********************96..67899*********9993334668876333679*******99999999999888766 PP

>> TIGR03301  PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   2.8e-23   2.9e-20      34     349 ..      74     411 ..      63     417 .. 0.74

  Alignments for each domain:
  == domain 1    score: 70.8 bits;  conditional E-value: 2.8e-23
    TIGR03301  34 eqvrekllklaegddkytav.llqgSGtaaveavigslvpkegkllvlenGaYgeRlakiaeylglphtalkfse...eeevdlse.......ieelLae..dpdithvavvHhEtttgiLnp...leaiakvarshgavlivDavSslgaipidieeldvdaliasanKclegvpGlsFviarrdlleasag.narSlyldLydqwaymeke...gk..wrftppthvvaAlaqAleeleaeggvearlerykrnaellvdglralGleplleeeiqspiivsfkspddpdfdFdklyqelkergfviYpg...kvsl...velfrigtiGeidaedierlle 349
                  ++v ++l +l+++  +   v ++ gSGt+++eav      +++++lv+ nG ++ R ++i e+ ++p ++  ++    +++vd ++       ++e++a+  ++  +++ + H Et+tg++ p   ++++ + +r+ g  +++D ++s g++ +d+++l+vd++i++ +K+  g    + v++ + + e+ +  +  S+++ L+  w+++  +   g    + t pt+ ++ +++   e  ++g  e + ++y+   ++ ++ l + Gl ++  + +q+p ++ ++sp+ ++    ++ ++ k+ g+ i  g   k+ +   +++fr+g  G  +  die  ++
  MMETSP1061-20121228|24110_1  74 QKVMRDLNALLKETYNAEKVaIIPGSGTFGMEAVARQF-ATDEHVLVIRNGWFSYRWTEIFEMGDIPKSHTVMKArpiDSSVDKHQyqyapcpVDEVVAKiyEERPATLFCAHVETSTGMILPddyIRKVSAAMRDVGGLFVLDCIAS-GTVWADMKDLGVDVVISAPQKGWTGPCCSALVMMSERAQEKMETtKETSFAMSLKR-WSAIMDTyeaGGfgYHTTMPTDALRDFHEISVETLKVGLPELKEAQYEL-GKQARAVLDERGLTSISAPGFQAPGVLVYHSPAATEN--PEMMTKFKKGGLQIAMGvpwKLDEpegMKTFRLGLFGLDKMGDIEGTVN 411
                  566677777777666544441568*********98887.999************************9765433221112222222111122226666665335556778889*******998766688889999************99.99999***************************9998888887765889******99.6655444234432246699**********99999999977888888865.5677999*************************95544..4788888888877765422233321114677777777666666666555 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   1.4e-06    0.0015     177     244 ..     199     267 ..     183     288 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 1.4e-06
    TIGR01976 177 laaltelvhaaGalvvvDavhyaphaliDvqalgaDllvcsayk.ffgPhlGilvvraellk.slkpskl 244
                  ++ + ++ +++G+l+v+D+++ +     D+++lg D+++  + k + gP   +lv+ +e  + +++++k+
  MMETSP1061-20121228|24110_1 199 IRKVSAAMRDVGGLFVLDCIASGT-VWADMKDLGVDVVISAPQKgWTGPCCSALVMMSERAQeKMETTKE 267
                  6778999************98775.679**************98799****9999887765504444444 PP

>> TIGR01366  serC_3: putative phosphoserine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   6.1e-05     0.063     134     211 ..     183     267 ..     170     274 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 6.1e-05
    TIGR01366 134 lahnetstgvava...vrrpegsde...alvvidatsgagglpvdike..tdvyyfapqksfasdgglwlavlspaaleriekiaa 211
                   ah etstg++++   +r++  +      l v+d+ + +g +  d+k+   dv   apqk ++      l ++s  a e++e  + 
  MMETSP1061-20121228|24110_1 183 CAHVETSTGMILPddyIRKVSAAMRdvgGLFVLDCIA-SGTVWADMKDlgVDVVISAPQKGWTGPCCSALVMMSERAQEKMETTKE 267
                  69**********8777888887643245899999864.6788889987447999*************************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.27u 0.11s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1913.84
//
Query:       MMETSP1061-20121228|24137_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 1029.51
//
Query:       MMETSP1061-20121228|24136_1  [L=450]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (450 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1979.84
//
Query:       MMETSP1061-20121228|24149_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1442.45
//
Query:       MMETSP1061-20121228|24184_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 479.96
//
Query:       MMETSP1061-20121228|24188_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-08   32.1   0.0    4.9e-08   31.0   0.0    1.5  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    1.2e-06   25.9   0.1    1.6e-05   22.2   0.1    2.0  2  TIGR03448 mycothiol_MshD: mycothiol synthase
    0.00013   18.5   0.0    0.00018   18.0   0.0    1.1  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
     0.0027   15.7   0.0     0.0042   15.0   0.0    1.2  1  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   4.8e-11   4.9e-08      58     117 ..     172     232 ..     164     235 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 4.8e-11
    TIGR01575  58 ilniavkpeyqgqGiGraLlkelikeakerg.vkeifLEVResNvaAqaLYkklgfkeial 117
                  ++n+av  +++++Gi+++L++e+++ ++ +     ++L V e N+ A +LY+klg+k++ +
  MMETSP1061-20121228|24188_1 172 MSNLAVGRAFRRKGIAEKLVNEVERMVQYEWgYDDCYLYVEERNKPAVRLYQKLGYKKMWV 232
                  479**********************9986544*************************9866 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0     0.001       1.1      70      97 ..     168     195 ..     158     200 .. 0.84
   2 !   22.2   0.1   1.5e-08   1.6e-05     235     291 ..     176     233 ..     175     235 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.001
    TIGR03448  70 adsemaElvvhPaaRrrGigkalvrall 97 
                  + + m++l+v  a+Rr+Gi+++lv+++ 
  MMETSP1061-20121228|24188_1 168 NGPLMSNLAVGRAFRRKGIAEKLVNEVE 195
                  567899******************9875 PP

  == domain 2    score: 22.2 bits;  conditional E-value: 1.5e-08
    TIGR03448 235 gvdpaaqgrGLGkaLtliGlkhleer.glravlLYveadneaAvrtYekLgFtvaevd 291
                  +v  a +++G+ + L+    + ++++ g     LYve+ n+ Avr+Y+kLg++++ vd
  MMETSP1061-20121228|24188_1 176 AVGRAFRRKGIAEKLVNEVERMVQYEwGYDDCYLYVEERNKPAVRLYQKLGYKKMWVD 233
                  68889999*******998888888878999**********************988766 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   1.7e-07   0.00018     153     215 ..     167     230 ..     153     235 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 1.7e-07
    TIGR03103 153 ekGsslWalavdpqaakpGvGealvralaehfqarglayld..lsvlhdneqaialyeklgfrri 215
                  ++G  +  lav ++ ++ G+ e+lv ++ e++ + +  y d  l v   n+ a++ly+klg++++
  MMETSP1061-20121228|24188_1 167 KNGPLMSNLAVGRAFRRKGIAEKLVNEV-ERMVQYEWGYDDcyLYVEERNKPAVRLYQKLGYKKM 230
                  67777889*****************985.66666666666644889999**************98 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.1e-06    0.0042      88     136 ..     182     230 ..     174     238 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.1e-06
    TIGR03585  88 vkkgkGsvleealleyafeklklkkLkleVlesNekalklyekfgfele 136
                   +kg+ + l ++++++++ + + +   l+V e N+ a++ly+k g++  
  MMETSP1061-20121228|24188_1 182 RRKGIAEKLVNEVERMVQYEWGYDDCYLYVEERNKPAVRLYQKLGYKKM 230
                  55788899**************************************865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 1130.16
//
Query:       MMETSP1061-20121228|24194_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 2084.52
//
Query:       MMETSP1061-20121228|24211_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|24245_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-10   37.5   0.1    4.6e-10   36.5   0.1    1.4  1  TIGR00717 rpsA: ribosomal protein S1
    5.8e-10   36.0   0.0    5.8e-10   36.0   0.0    3.0  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
     0.0091   13.4   0.1       0.02   12.3   0.1    1.6  1  TIGR00448 rpoE: DNA-directed RNA polymerase


Domain annotation for each model (and alignments):
>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.1   3.4e-13   4.6e-10     187     371 ..     428     529 ..     420     534 .. 0.49

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 3.4e-13
    TIGR00717 187 egeevkGvVknitdfgafvdlgg.vdgllhitdlswkrvkhPseivevgdev.kvkvikvDkekkrislslkql..kedPWeeiekkfkvgkkikgkvtnladyGvfveieegiEGlvhvsElsWekknskPskvvkvGdevevkvleideerrrvslslKqvkanPweefeekhpvGdkvkgkikkit 371
                  +g++  G V+ + +fg+f d g   d++ h++ ls   +++P+ + ++gde+ kv+++++D+++kri++sl+     +d  + ie++    +kik                                                                                        k kk t
  MMETSP1061-20121228|24245_1 428 IGQSHPGRVVYVKPFGVFFDIGChSDAFCHVSRLSDDYIEKPESMFKEGDELpKVRIVEIDRKHKRITVSLQSEarMQDERKSIEDRKSRKEKIKQ---------------------------------------------------------------------------------------KSKKTT 529
                  444455555555555555555542355555555555555555555555555544555555555555555554321134444555555555555444.......................................................................................444444 PP

>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.8     0.079   1.1e+02     177     275 ..      37     135 ..      27     159 .. 0.65
   2 ?   -5.6   5.3       1.6   2.2e+03     220     275 ..     163     221 ..     136     241 .. 0.42
   3 !   36.0   0.0   4.3e-13   5.8e-10     602     686 ..     412     498 ..     375     501 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.079
    TIGR03591 177 vlmvEseakelseeemleaiefgheeikevieaieelakevgkekleveakeedeelkkkveelaeekelkealkieekqereealeevkeevleelae 275
                  v  vE e ++ + + +    + g e  ke  ++ +  a+ev+k+++e +++ ++++ +++ +++a++k+     + +e  + +++ +ev+++  ++ ++
  MMETSP1061-20121228|24245_1  37 VFTVEQEIQQYQGSYISFITMAGGEGAKERRRLKRLAAQEVKKKSTESATSPSKQASTDQSKNRASAKRSGGNRSYQEAGSTRRNSNEVRDNPFNRNKS 135
                  666777777777777776777777777777777777777777777777766666666666666666666666666666666666667777665554443 PP

  == domain 2    score: -5.6 bits;  conditional E-value: 1.6
    TIGR03591 220 ekleveak...eedeelkkkveelaeekelkealkieekqereealeevkeevleelae 275
                  +kle++a+   +++e ++k++ee  ++k+ +++ + +++++r++++ +  ++ ++++ +
  MMETSP1061-20121228|24245_1 163 RKLELAANeneKARELIQKQMEEFESKKKFHSQRNNNDRRKRQKTTTSGDSNHVNNTDN 221
                  22222222000122223333333333333333333333333333333333333332222 PP

  == domain 3    score: 36.0 bits;  conditional E-value: 4.3e-13
    TIGR03591 602 aekakklieeitaevevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdev.kvkvleidkk.grvklsr 686
                   +k   + ++ +++  +g+ + g+vv +++fg+f ++    d+++h+S+l+++ +ek e+++kegde+ kv+++eid+k  r+++s 
  MMETSP1061-20121228|24245_1 412 SKKRYCIGRKPVTDFVIGQSHPGRVVYVKPFGVFFDIGCHSDAFCHVSRLSDDYIEKPESMFKEGDELpKVRIVEIDRKhKRITVSL 498
                  2333334456788899***************************************************978*******9615666665 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.1   1.5e-05      0.02      87     176 ..     434     524 ..     417     527 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.5e-05
    TIGR00448  87 GevieivefGafvslGpl.ddllhvsqvlddyvvydpkkealigket.kkvldvgdkvrarivalslkerkpekskieLtmrqpllgklewi 176
                  G v+ +  fG+f  +G   d++ hvs++ ddy+  +p+     g e  k ++ + d+   ri      e + ++++ +++ r+  ++k++ +
  MMETSP1061-20121228|24245_1 434 GRVVYVKPFGVFFDIGCHsDAFCHVSRLSDDYIE-KPESMFKEGDELpKVRIVEIDRKHKRITVSLQSEARMQDERKSIEDRKSRKEKIKQK 524
                  899*************7538999*********96.455555556564155566667777888765555666688888999999999988866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       341  (0.0831302); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.54u 0.13s 00:00:00.67 Elapsed: 00:00:00.40
# Mc/sec: 2029.33
//
Query:       MMETSP1061-20121228|24248_1  [L=1109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.53
# Mc/sec: 2761.81
//
Query:       MMETSP1061-20121228|24247_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-60  203.1  22.9    1.9e-60  202.6  15.9    1.1  1  TIGR00841 bass: bile acid transporter


Domain annotation for each model (and alignments):
>> TIGR00841  bass: bile acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  202.6  15.9   4.7e-64   1.9e-60       6     306 ..      85     385 ..      81     390 .. 0.94

  Alignments for each domain:
  == domain 1    score: 202.6 bits;  conditional E-value: 4.7e-64
    TIGR00841   6 vckaaatvleeeekvlallgfnfaalstvlstillil.LllimlslGltlelekfkellrkPkgviigllaQygimPLvgFllakvfklspelavgvlivgccPGGtaSnvltyllkGdvalsismTtiStllalgmlPLllyiyakklvdgtlkvpykkivls.lvivliPvsiGvlvksklpqiakiilk.vgliavillsvliavvlainvenlaeielklllvvillplagfllGyllaklakldlarcrtvsiEvGmQnsqLastllqlsfsplsa.vpsaifpliyalfqlafallllk 306
                  v+  a t++  +++++++  ++ ++ +++ +t  ++  L+ +mls+G+tl+ ++f  ++++P  v++ +   y +mP ++ +l+k fkl p+++ g+++vg+  GG+aSn+ ty+++G+vals++mTt  tl a+ m+PL+ + + +++v+    v++ +i+ s +++vl P++iG+  ++++p ++k il  +++i+v+++ +l+a+++a+++e +++ +l+l + v ll+l+g l+Gy+l kl +    ++rt++iE+ m +s+ +++l++l+f +  a vpsa++++++al+++ +a +++ 
  MMETSP1061-20121228|24247_1  85 VADVATTLFPLWTILFSVAALKTPQSFAWFTTEYFTAaLAALMLSMGITLTPQDFLDVMKEPVSVAMQFTLCYAMMPALALGLGKFFKLDPAMLGGMVLVGSINGGQASNLCTYIARGNVALSVLMTTATTLGAIFMTPLICKAVLGTVVP----VDAVGIAFStIQVVLAPIAIGMTTNKFFPGFVKKILPiTPVIGVLSTCLLVASAVAQVSEPIMNAGLQLQTPVFLLHLLGGLVGYFLPKLTGFSEVKSRTMAIETSMKSSAFGFLLAKLHFGQYAArVPSAVSVVWMALTGSLLAVIWRY 385
                  56677788888899999999999999999988655555********************************************************************************************************999999999....*******999******************8887777776999*********************************************************************************7665379***************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1921.17
//
Query:       MMETSP1061-20121228|24252_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-06   23.2   0.2    8.1e-06   22.7   0.1    1.2  1  TIGR00115 tig: trigger factor


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.1     2e-09   8.1e-06      13      80 ..      89     151 ..      83     175 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 2e-09
    TIGR00115  13 evkeevdkalkelakkvkipGFRkGKvPrsvvkkrygkevlqealnellqesfkeavkeekikplgqp 80 
                  ++ e++ k++++ ak+ + +GFR+G +P ++++++     ++ a++e+ +e++ ea+++++i+p  + 
  MMETSP1061-20121228|24252_1  89 RFSEAIYKQITNDAKRQQFQGFRPGTIPPHLLQTY-----RAYAMDECARETILEAMQQNNIRPFTTA 151
                  5678889999999*******************987.....8899********************7443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1682.86
//
Query:       MMETSP1061-20121228|24251_1  [L=773]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (773 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.36
# Mc/sec: 2834.10
//
Query:       MMETSP1061-20121228|24255_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 1043.91
//
Query:       MMETSP1061-20121228|24253_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       377  (0.0919064); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.12s 00:00:00.50 Elapsed: 00:00:00.45
# Mc/sec: 1478.28
//
Query:       MMETSP1061-20121228|24256_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|24254_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   11.1   3.6      0.041   10.5   2.5    1.2  1  TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family


Domain annotation for each model (and alignments):
>> TIGR02122  TRAP_TAXI: TRAP transporter solute receptor, TAXI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   2.5     1e-05     0.041      10     102 ..      80     171 ..      75     178 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1e-05
    TIGR02122  10 aallivvialaaaa.eeekeetfltigTggtgGvyypiggalaklinkkleklkvsvqstggsvenvnlleageaelaivqsdvvyeAyeGege 102
                  aa++++++ + ++  +    +t++ ++Tg++ +     g + ++  ++++++++ +  +  +s++n n++++++ +      dv+y  ++G++e
  MMETSP1061-20121228|24254_1  80 AAAVATTLRASRSTsAGTARPTMMALTTGSSRTLIEVGGDGTSSCATSAYSNANSNSNANSNSNANTNAVSEERENTCRYELDVTY--IDGDYE 171
                  222222222222223556699********************************************************999999999..777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1626.29
//
Query:       MMETSP1061-20121228|24257_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 2541.85
//
Query:       MMETSP1061-20121228|24258_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 936.49
//
Query:       MMETSP1061-20121228|24250_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1766.95
//
Query:       MMETSP1061-20121228|24260_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-23   78.9   0.0    1.2e-22   78.0   0.0    1.5  2  TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein


Domain annotation for each model (and alignments):
>> TIGR03303  OM_YaeT: outer membrane protein assembly complex, YaeT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.11   4.4e+02      35      56 ..      88     109 ..      86     113 .. 0.78
   2 !   78.0   0.0   2.8e-26   1.2e-22     532     741 .]     330     584 ..     237     584 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.11
    TIGR03303  35 kideaikaLyktglFedvkier 56 
                   +++a+ +L +t+ F++v+ie 
  MMETSP1061-20121228|24260_1  88 GVAKAVDNLMRTQAFNSVQIEL 109
                  5788999999999999999764 PP

  == domain 2    score: 78.0 bits;  conditional E-value: 2.8e-26
    TIGR03303 532 tdsslslslsydtldsayfPtkGvllrlsqefagpggdlkyyklevkseyyiplsk..eddlvlslkgelgygngyggkelp..................fyerfyaggigsvRGFesnsigPrdka.....esgdsiGGnakavasvelifPlpfl..keenklrlslFvDagnvwdteqkke..................ekysdsselraSvGvglrwisPigpLrlslakplkkkkgdktesfqfsigtkf 741
                  ++++ +++ + +++d++y Pt Gv + +s e+agp gd+ ++k++      +pl    ++  ++  + + ++ n ++ +                     +++rf++gg +++RGF   +igPr+++       gd++GG+ ++ +s+  ++  p     e+ ++r+  F  ag++++ ++ +                   +  +  ++ r+ vGvg++  +P+g +++ +a+pl   + d   ++qf +g +f
  MMETSP1061-20121228|24260_1 330 HSLKWEARTNGSSVDDRYQPTVGVDVHASTELAGPPGDVGFVKAQGGIALHVPLDGdvDELGNFIPSKNPSLLNRISFHATAsggllkplsfgglcnpptISDRFFVGGPMQLRGFLPAGIGPRSAKggstsPGGDAMGGSLYYRTSFSASMAPPRGslLETYGVRFFGFWNAGTLVGVSSLTCsdyhhyppapgqeqvkipTWREIAQSTRSAVGVGVSGGTPLGRMEITYAYPLRYGPRDARRNLQFGFGFSF 584
                  6777778888899*****************************************9965332333334444444444443322346666888999999999*************************99***999*********99999988886665446*******************98887799*************9988888899*******************************************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 2090.42
//
Query:       MMETSP1061-20121228|24261_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-191  634.3   0.0   1.7e-169  561.9   0.0    2.0  2  TIGR02006 IscS: cysteine desulfurase IscS
   2.8e-135  448.7   0.0   6.5e-119  394.9   0.0    2.0  2  TIGR03402 FeS_nifS: cysteine desulfurase NifS
   1.9e-128  426.5   0.0     8e-109  362.0   0.0    2.1  2  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
   1.1e-100  334.9   0.0    1.1e-89  298.7   0.0    2.0  2  TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family
      7e-43  144.8   0.0    7.1e-42  141.5   0.0    2.3  2  TIGR01979 sufS: cysteine desulfurase, SufS family
    1.9e-40  136.9   0.0    5.1e-36  122.3   0.0    3.1  3  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
    4.7e-24   83.1   0.0    1.4e-21   75.0   0.0    2.8  2  TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
    1.9e-22   77.9   0.0    2.2e-17   61.3   0.0    3.0  3  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
    1.9e-10   37.9   0.0    2.8e-10   37.4   0.0    1.1  1  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
    5.4e-10   37.0   0.0    8.4e-10   36.4   0.0    1.2  1  TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
    1.4e-06   25.4   0.0      2e-06   24.9   0.0    1.2  1  TIGR02539 SepCysS: Sep-tRNA:Cys-tRNA synthase
    3.4e-06   24.2   0.0      7e-06   23.2   0.0    1.4  1  TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
     0.0017   14.6   0.0     0.0024   14.1   0.0    1.1  1  TIGR03799 NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
  ------ inclusion threshold ------
      0.012   12.4   0.0      0.017   11.9   0.0    1.2  1  TIGR03588 PseC: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
      0.013   12.3   0.0       0.02   11.7   0.0    1.2  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases


Domain annotation for each model (and alignments):
>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.6   0.0     1e-22   2.7e-20       5      64 ..      98     157 ..      95     166 .. 0.95
   2 !  561.9   0.0  6.3e-172  1.7e-169      59     401 ..     174     518 ..     159     519 .. 0.97

  Alignments for each domain:
  == domain 1    score: 70.6 bits;  conditional E-value: 1e-22
    TIGR02006   5 iyldyaattpvdkrvaekmleyltvkfGnpasrshkfGweaeeavenarkevaeligads 64 
                   yld +attp+d+rv+++m +y++ ++Gnp+s++h+fGweae ave+ar+++a+li+ ++
  MMETSP1061-20121228|24261_1  98 AYLDMSATTPMDPRVLDAMAPYMIGSYGNPHSKTHAFGWEAEAAVEKARAQIAALISGEP 157
                  6*******************************************************9876 PP

  == domain 2    score: 561.9 bits;  conditional E-value: 6.3e-172
    TIGR02006  59 ligadsreivftsGatesdnlaikGvakfykskgkhiitsktehkavldtcrelereGfevtylevk.edGlidleelkaairddtilvsvmavnneiGviqdiaaigelcrerkvlfhvdaaqsvGkvpidleelkvdllslsahkiyGpkGiGalyvrrkprvrlealihGGGherGlrsGtlpthqivGlGeafriakeelakdtarvlklrdkllngies.ieevylngdleqrvksnlnvsfnyveGeslilalkdlavssGsactsaslepsyvlralGlndelahssirftlGrftteeeidyavklvkeavdklrelsplwemlkeGvdlnsiewaa 401
                    g d++ei+ftsGates+nl+ikG+a+fyk++gkh+it++tehk+vld+cr le eG++vtyl+v+ + G +d+++l+aairddtilvsvmavnneiG++q++++igelcr+rk++fh+daaq +Gk+pid++e k+dl+s+s+hkiyGpkGiGalyvrr+pr+rle++  GGG+erGlrsGtlp  + vG+G a+++a +e + d++ + +l +kl++gie+ i +v  ngd e+++++ ln sf+yveGesl++alk++avssGsactsaslepsyvlralG++delahss+rf++Grftte+e+d++++l+k++v +lre+splwem++eG+dl++i+w++
  MMETSP1061-20121228|24261_1 174 KKGVDPKEIIFTSGATESNNLSIKGAAHFYKKRGKHVITTQTEHKCVLDSCRSLEMEGYDVTYLPVQqSTGRVDMDDLRAAIRDDTILVSVMAVNNEIGTLQPLKEIGELCRSRKIVFHCDAAQMLGKMPIDVDEYKIDLMSMSSHKIYGPKGIGALYVRRRPRIRLEPIFSGGGQERGLRSGTLPHALCVGFGYACELAAKEREFDEEWISYLAEKLRKGIEEnIPDVVRNGDPEHNYPGCLNYSFAYVEGESLLMALKNIAVSSGSACTSASLEPSYVLRALGVDDELAHSSLRFGIGRFTTENEVDFVLELLKKHVVRLREMSPLWEMVQEGIDLKEIQWSQ 518
                  5689*************************************************************97257********************************************************************************************************************************************************988**********************************************************************************************************************86 PP

>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.1   0.0   3.2e-17   8.9e-15       2      60 ..      99     158 ..      98     167 .. 0.93
   2 !  394.9   0.0  2.4e-121  6.5e-119      56     379 .]     176     501 ..     160     501 .. 0.97

  Alignments for each domain:
  == domain 1    score: 52.1 bits;  conditional E-value: 3.2e-17
    TIGR03402   2 YlDnnattkvdpevleamlpyltekfGnpss.lhsfgkevkkaveeaRekvakllgaeee 60 
                  YlD +att +dp+vl+am py+  ++Gnp s +h+fg e+++ave+aR+++a+l++ e++
  MMETSP1061-20121228|24261_1  99 YLDMSATTPMDPRVLDAMAPYMIGSYGNPHSkTHAFGWEAEAAVEKARAQIAALISGEPS 158
                  *****************************7758**********************98865 PP

  == domain 2    score: 394.9 bits;  conditional E-value: 2.4e-121
    TIGR03402  56 gaeeeeiiftsggtesdntaiksalaakkek.khiittavehpavlslceyLekegykvtylpvde.eGrldleelkkaltdetilvsvmyanneiGtifpieeiaklakekgvlfhtDavqavGkvpidlkeleidllslsghklhaPkgvgalyirkg..vklepllrGGhqergrRagtenvpgivglgkaielaaeeleeenekvkalRdrlekgllekipkarvnGdkekRlpntvnisfefiegeailllldkegiaassGsaCtsgslepshvlramgvpaevahGslRlslsrenteedvdkvlevlpeiverlRelspl 379
                  g +++eiiftsg+tes+n +ik+a++  k++ kh+itt+ eh+ vl+ c+ Le egy vtylpv++ +Gr+d+++l++a++d+tilvsvm  nneiGt++p++ei++l+++++++fh+Da q +Gk+pid++e +idl+s+s+hk+++Pkg+galy+r+   ++lep++ GG+qerg R+gt   +  vg+g a+elaa+e e ++e ++ l ++l kg+ e+ip+++ nGd+e+  p+ +n sf+++ege++l+ l+  +ia+ssGsaCts+sleps+vlra+gv  e+ah slR+ ++r +te++vd vle l++ v rlRe+spl
  MMETSP1061-20121228|24261_1 176 GVDPKEIIFTSGATESNNLSIKGAAHFYKKRgKHVITTQTEHKCVLDSCRSLEMEGYDVTYLPVQQsTGRVDMDDLRAAIRDDTILVSVMAVNNEIGTLQPLKEIGELCRSRKIVFHCDAAQMLGKMPIDVDEYKIDLMSMSSHKIYGPKGIGALYVRRRprIRLEPIFSGGGQERGLRSGTLPHALCVGFGYACELAAKEREFDEEWISYLAEKLRKGIEENIPDVVRNGDPEHNYPGCLNYSFAYVEGESLLMALK--NIAVSSGSACTSASLEPSYVLRALGVDDELAHSSLRFGIGRFTTENEVDFVLELLKKHVVRLREMSPL 501
                  7789************************************************************8637*****************************************************************************************996337889****************************************************************************************9995..79****************************************************************96 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.9   0.0   2.4e-20   6.6e-18       1      59 [.      99     157 ..      99     167 .. 0.95
   2 !  362.0   0.0  2.9e-111    8e-109      54     352 ..     174     471 ..     158     472 .. 0.97

  Alignments for each domain:
  == domain 1    score: 62.9 bits;  conditional E-value: 2.4e-20
    TIGR03235   1 YLDvnattpvdpevaevvrpflleefGnassrthefgakakkavekarkqvaealgadk 59 
                  YLD++attp+dp+v +++ p+++  +Gn+ s+th+fg +a+ avekar+q+a ++  ++
  MMETSP1061-20121228|24261_1  99 YLDMSATTPMDPRVLDAMAPYMIGSYGNPHSKTHAFGWEAEAAVEKARAQIAALISGEP 157
                  9***************************************************9997765 PP

  == domain 2    score: 362.0 bits;  conditional E-value: 2.9e-111
    TIGR03235  54 algadkeeviftsgatesnnlallGlaeygeqkgkkhiitsaiehkavlepikfLeenGftvtylevdes.GridveelkeairedtllvslmavnnevGslqpireiaevleerevflhvDaaqvvgkiavdlsakridlisvsghkiygPkGiGalvirkrrkkkaplkPllfGGGqergLrpGtLpvalivGlgeaaeiarknaeakekklralknklldaLkt..levklngdpaekipnvlnlsidgvnsealivaLkavvavstgsaCssskyepshvLkamgldedrlasalrfs 352
                    g+d++e+iftsgatesnnl ++G a++ +++g kh+it++ ehk+vl++++ Le +G+ vtyl+v++s Gr+d+++l+ air+dt+lvs+mavnne+G+lqp++ei+e++++r++ +h Daaq +gk+  d+++ +idl+s+s+hkiygPkGiGal++r+   ++++l+P++ GGGqergLr+GtLp al vG+g a+e+a k++e +e+    l +kl++ +++  ++v  ngdp+++ p  ln s+  v+ e+l++aLk+ +avs+gsaC+s+++eps+vL+a+g+d++ ++s+lrf 
  MMETSP1061-20121228|24261_1 174 KKGVDPKEIIFTSGATESNNLSIKGAAHFYKKRG-KHVITTQTEHKCVLDSCRSLEMEGYDVTYLPVQQStGRVDMDDLRAAIRDDTILVSVMAVNNEIGTLQPLKEIGELCRSRKIVFHCDAAQMLGKMPIDVDEYKIDLMSMSSHKIYGPKGIGALYVRR--RPRIRLEPIFSGGGQERGLRSGTLPHALCVGFGYACELAAKEREFDEEWISYLAEKLRKGIEEniPDVVRNGDPEHNYPGCLNYSFAYVEGESLLMALKN-IAVSSGSACTSASLEPSYVLRALGVDDELAHSSLRFG 471
                  5699*****************************9.********************************8744******************************************************************************************9..799**********************************************************998899*******************************96.89*********************************95 PP

>> TIGR03403  nifS_epsilon: cysteine desulfurase, NifS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.3   0.0   8.6e-12   2.4e-09       2      58 ..      99     156 ..      98     168 .. 0.89
   2 !  298.7   0.0   4.2e-92   1.1e-89      59     380 ..     178     499 ..     172     501 .. 0.96

  Alignments for each domain:
  == domain 1    score: 34.3 bits;  conditional E-value: 8.6e-12
    TIGR03403   2 yldnnattlldpkvkelmepflkdiygnpns.lhkfgtethpaiaealdklykginar 58 
                  yld  att +dp+v + m p++   ygnp s  h fg e+ +a+++a  ++ + i+ +
  MMETSP1061-20121228|24261_1  99 YLDMSATTPMDPRVLDAMAPYMIGSYGNPHSkTHAFGWEAEAAVEKARAQIAALISGE 156
                  9****************************9846**************98887766655 PP

  == domain 2    score: 298.7 bits;  conditional E-value: 4.2e-92
    TIGR03403  59 deddivitscatesnnwvlkgvyfdeilkkeknhiittevehpavraacafleslgvevtylpvne.qgvitaeqvreaitektalvsvmwannetglifpikeigelckekgvlfhtdavqavgkipvdvqkvkvdflsfsahkfhgpkgvgalyikk..gveltpllhggehmsgrrsgtlnvpyivamgealklaveyldfekssvrklrdkledalle.lpdvlvvgdrehrvpntilisikgvegeamlwdlnkagiaastgsacasedleanpvmvaigadkelahtairlslsrftteeeidyaievfkkaverlrais 380
                  d  +i++ts atesnn  +kg    +  kk  +h+itt+ eh +v  +c+ le  g +vtylpv++  g ++++++r ai+++t lvsvm  nne g + p+keigelc+ + ++fh+da q +gk+p+dv + k+d++s+s+hk++gpkg+galy+++   ++l p++ gg   +g rsgtl  +  v++g a +la++  +f+++ +  l +kl + + e +pdv+  gd eh  p  +  s   vege++l  l   +ia s+gsac+s  le   v+ a+g d+elah+++r+ + rftte+e+d+ +e +kk v rlr +s
  MMETSP1061-20121228|24261_1 178 DPKEIIFTSGATESNNLSIKGA--AHFYKKRGKHVITTQTEHKCVLDSCRSLEMEGYDVTYLPVQQsTGRVDMDDLRAAIRDDTILVSVMAVNNEIGTLQPLKEIGELCRSRKIVFHCDAAQMLGKMPIDVDEYKIDLMSMSSHKIYGPKGIGALYVRRrpRIRLEPIFSGGGQERGLRSGTLPHALCVGFGYACELAAKEREFDEEWISYLAEKLRKGIEEnIPDVVRNGDPEHNYPGCLNYSFAYVEGESLLMALK--NIAVSSGSACTSASLEPSYVLRALGVDDELAHSSLRFGIGRFTTENEVDFVLELLKKHVVRLREMS 499
                  6789*****************7..578899999*******************************86369****************************************************************************************9733589******************************************************99754*******************************9995..7**************************************************************998 PP

>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  141.5   0.0   2.6e-44   7.1e-42      13     249 ..      91     348 ..      85     350 .. 0.94
   2 ?   -2.3   0.0       1.2   3.3e+02     349     397 ..     431     490 ..     412     493 .. 0.70

  Alignments for each domain:
  == domain 1    score: 141.5 bits;  conditional E-value: 2.6e-44
    TIGR01979  13 kvngkplvYLDsaatsqkPkaVidaveeyyeksnanvhRgvhtlseeateayeeaRekvakfinAksa.....................eeivftkgateslNlvaaslgesslkegdeivvseleHHanivpwqllakrkgaklkvield.edgtldleeleelltektklvaithvsNvlGtvnpveeiiklahevgalvlvDgaqavphlkvdvkeldvDflvfsgHKllgptGiGvLygkkelLeklpPfegGGe 249
                  ++++ + +YLD +at+     V+da++ y   s++n h  +h+   ea +a+e+aR+++a +i+ + +                     +ei+ft+gates Nl  +  ++   k+g +++++++eH   + + + l +++g+++ +++++ + g++d+++l+  +++ t lv++++v N +Gt++p++ei +l +++++++  D+aq + ++++dv e ++D + +s+HK++gp GiG Ly+++    +l+P+  GG 
  MMETSP1061-20121228|24261_1  91 QFREGRAAYLDMSATTPMDPRVLDAMAPYMIGSYGNPHSKTHAFGWEAEAAVEKARAQIAALISGEPSdaesdesaapkkrgrkkgvdpKEIIFTSGATESNNLSIKGAAHFYKKRGKHVITTQTEHKCVLDSCRSL-EMEGYDVTYLPVQqSTGRVDMDDLRAAIRDDTILVSVMAVNNEIGTLQPLKEIGELCRSRKIVFHCDAAQMLGKMPIDVDEYKIDLMSMSSHKIYGPKGIGALYVRRRPRIRLEPIFSGGG 348
                  66778899*********999*******************************************865444455588889999999999999*************************************9999888877.679*********95679**************************************************************************************************999885 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.2
    TIGR01979 349 deeGiavRsGhhCaqPlmkrld...........veataRaslalYnteedvdalvealkk 397
                    + iav sG  C+   ++               ++++R  ++ + te++vd ++e lkk
  MMETSP1061-20121228|24261_1 431 ALKNIAVSSGSACTSASLEPSYvlralgvddelAHSSLRFGIGRFTTENEVDFVLELLKK 490
                  556788889998876543322223344466665667788888888888888888777765 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0   0.0     0.002      0.55       2      58 ..      99     154 ..      98     160 .. 0.91
   2 !  122.3   0.0   1.9e-38   5.1e-36      61     226 ..     178     348 ..     175     361 .. 0.91
   3 ?    3.9   0.0     0.018       4.9     349     374 ..     464     489 ..     429     491 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.002
    TIGR01977   2 YldnAattypKpdeviealadllkeeggsagrgserlalrasreveetReelaklfn 58 
                  Yld  att p  + v +a+a ++    g++    ++   +a+ +ve +R+++a l+ 
  MMETSP1061-20121228|24261_1  99 YLDMSATT-PMDPRVLDAMAPYMIGSYGNPHSKTHAFGWEAEAAVEKARAQIAALIS 154
                  9****999.6667899******999999**************************986 PP

  == domain 2    score: 122.3 bits;  conditional E-value: 1.9e-38
    TIGR01977  61 ekakvvFtnnattalNialkG....ilkegkhvittslEHnaVlRpleklkeelgvevtivkaee.eglvdvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaGvleidveklaidllaftGHKgLlgpqGiggllikekik..lkpllsGGt 226
                  + ++++Ft+ at++ N+ +kG     +k+gkhvitt  EH+ Vl   + l+ e g +vt++++++ +g+vd+++++ ai++dt l+ +  + N  Gt++p++ei+el++ + i+f  Daaq++G ++idv++++idl+ ++ HK ++gp+Gig+l+++ + +  l+p++sGG 
  MMETSP1061-20121228|24261_1 178 DPKEIIFTSGATESNNLSIKGaahfYKKRGKHVITTQTEHKCVLDSCRSLEME-GYDVTYLPVQQsTGRVDMDDLRAAIRDDTILVSVMAVNNEIGTLQPLKEIGELCRSRKIVFHCDAAQMLGKMPIDVDEYKIDLMSMSSHK-IYGPKGIGALYVRRRPRirLEPIFSGGG 348
                  5679*****************65433579*********************999.*******997637****************************************************************************9.8***********9764434*******95 PP

  == domain 3    score: 3.9 bits;  conditional E-value: 0.018
    TIGR01977 349 atGtiRlslgyfnteeeieklvealk 374
                  a  ++R+++g f+te+e++ ++e+lk
  MMETSP1061-20121228|24261_1 464 AHSSLRFGIGRFTTENEVDFVLELLK 489
                  56789*****************9997 PP

>> TIGR03392  FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.0   0.0   5.1e-24   1.4e-21      16     246 ..      96     348 ..      84     355 .. 0.83
   2 ?    0.4   0.0      0.23        63     327     389 ..     417     488 ..     410     497 .. 0.60

  Alignments for each domain:
  == domain 1    score: 75.0 bits;  conditional E-value: 5.1e-24
    TIGR03392  16 ktvyldsaatalkpqavieatqdfyrlesatvhrsqykealsltaryeaareqvaelln............as.........daenivwtrGtteslnlvaqsyarprlqpedeiivseaehhanlipwlmvaeqtGakvvklplgadk.lpdiellpelltkktrllalsqmsnvtGGapdlariialahkagavvvvdGaqGvvhlpadvqaldidfyafsghklygptGiGvlyGktelleampp.wqGGG 246
                  ++ yld +at+     v++a+  +   + ++ h   ++   +  a  e+ar q+a l++            a+         d+++i++t G+tes nl ++  a    + +  +i +++eh++ l       e  G  v  lp+++     d++ l   + + t l+++  + n  G +  l++i +l+++ ++v   d aq + ++p+dv+++ id+ ++s+hk+ygp+GiG ly +      + p + GGG
  MMETSP1061-20121228|24261_1  96 RAAYLDMSATTPMDPRVLDAMAPYMIGSYGNPHSKTHAFGWEAEAAVEKARAQIAALISgepsdaesdesaAPkkrgrkkgvDPKEIIFTSGATESNNLSIKGAAHFYKKRGKHVITTQTEHKCVLDSC-RSLEMEGYDVTYLPVQQSTgRVDMDDLRAAIRDDTILVSVMAVNNEIGTLQPLKEIGELCRSRKIVFHCDAAQMLGKMPIDVDEYKIDLMSMSSHKIYGPKGIGALYVRRRPRIRLEPiFSGGG 348
                  678***777665555699***************************************96333222222211112222222224579***********************************99987665.556889*********9876267*************************************************************************************88665444444145555 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.23
    TIGR03392 327 afdfadvhhsdlvallaesgialraGqhcaqp......llaalGvsG.....tlrasfapyntkqdvdalveav 389
                   ++fa v  + l  l+a ++ia+ +G  c+        +l alGv       +lr  +  + t+++vd ++e +
  MMETSP1061-20121228|24261_1 417 NYSFAYVEGESL--LMALKNIAVSSGSACTSAslepsyVLRALGVDDelahsSLRFGIGRFTTENEVDFVLELL 488
                  556666665555..67889**********864112233567888865111114444455566666666666555 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00012     0.034      15      79 ..      94     158 ..      85     161 .. 0.82
   2 !   61.3   0.0   7.9e-20   2.2e-17      79     241 ..     179     342 ..     175     375 .. 0.87
   3 ?    1.6   0.0      0.11        30     365     401 .]     450     488 ..     416     488 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00012
    TIGR01976  15 sgedvvflDnpaGtqvPqsvldavsaaltrsnanrggayess.rkadqvvddAreavadllnaesp 79 
                  +g + ++lD +a t +  +vlda++ ++  s  n   ++++   +a++ v++Ar ++a+l+  e+ 
  MMETSP1061-20121228|24261_1  94 EG-RAAYLDMSATTPMDPRVLDAMAPYMIGSYGNPHSKTHAFgWEAEAAVEKARAQIAALISGEPS 158
                  44.589*******************9998777666666665549*****************98875 PP

  == domain 2    score: 61.3 bits;  conditional E-value: 7.9e-20
    TIGR01976  79 peevvlGanatslafllsralartl.gpgdEvivtrldheaNispWlqaaedagakvkwaevdeadgeleeadlaallsdrTRLVAvtaasnllGsivdlaaltelvhaaGalvvvDavhyaphaliDvqalgaDllvcsaykffgPh.lGilvvraellkslkp 241
                  p+e+++   at+   l  ++ a+ + + g  vi t+ +h+    + +   e  g +v +++v++++g+++ +dl+a + d T LV v a  n +G+++ l+ + el ++   +++ Da +++    iDv ++  Dl+ +s++k++gP+ +G+l+vr+  + +l+p
  MMETSP1061-20121228|24261_1 179 PKEIIFTSGATESNNLSIKGAAHFYkKRGKHVITTQTEHKCVLDSCR-SLEMEGYDVTYLPVQQSTGRVDMDDLRAAIRDDTILVSVMAVNNEIGTLQPLKEIGELCRSRKIVFHCDAAQMLGKMPIDVDEYKIDLMSMSSHKIYGPKgIGALYVRRRPRIRLEP 342
                  6688888888876665556666655157899**********999988.55669**********************************************************************************************77*******987776665 PP

  == domain 3    score: 1.6 bits;  conditional E-value: 0.11
    TIGR01976 365 avellrqLgleae..eGvvrvglahYntaeevdklleal 401
                   + +lr Lg+++e  +  +r g+  ++t++evd +le+l
  MMETSP1061-20121228|24261_1 450 PSYVLRALGVDDElaHSSLRFGIGRFTTENEVDFVLELL 488
                  3458999***97533689***************998875 PP

>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0     1e-12   2.8e-10      82     192 ..     185     296 ..     178     318 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 1e-12
    TIGR03812  82 vsGGteanilalraaknlakeekkekpeiivPesahfsfe...kaaellglelvkaeldeey.kvdvkkveeliedntiglvgiaGttelGlvDdieelskiakendlylhvDaa 192
                  +sG te+n l+++ a + +k++ k   ++i  ++ h       +  e+ g ++ + +++++  +vd+++++++i d ti +  +a + e+G++ +++e++++ ++ ++ +h Daa
  MMETSP1061-20121228|24261_1 185 TSGATESNNLSIKGAAHFYKKRGK---HVITTQTEHKCVLdscRSLEMEGYDVTYLPVQQSTgRVDMDDLRAAIRDDTILVSVMAVNNEIGTLQPLKEIGELCRSRKIVFHCDAA 296
                  79***********99999988776...8999999998765111456777778888888765439**************************************************9 PP

>> TIGR03301  PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   3.1e-12   8.4e-10     106     194 ..     241     326 ..     217     338 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 3.1e-12
    TIGR03301 106 seeeevdlseieelLaedpdithvavvHhEtttgiLnpleaiakvarshgavlivDavSslgaipidieeldvdaliasanKclegvpG 194
                  +++ +vd++++ +++++d+ + +v++v  E +   L pl++i++++rs+ +v+  Da   lg +pid++e ++d +  s+ K + g  G
  MMETSP1061-20121228|24261_1 241 QSTGRVDMDDLRAAIRDDTILVSVMAVNNEIG--TLQPLKEIGELCRSRKIVFHCDAAQMLGKMPIDVDEYKIDLMSMSSHK-IYGPKG 326
                  345679***********************985..5*****************************************999998.344445 PP

>> TIGR02539  SepCysS: Sep-tRNA:Cys-tRNA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.0   7.2e-09     2e-06     136     210 ..     248     322 ..     177     335 .. 0.81

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 7.2e-09
    TIGR02539 136 ieevedesgkevalallthvdgeyGnladakkvakvcrkkgvplllncaytvGrlpvsakevkadfivgsGhksm 210
                  ++++     +++ l+ +  v+ e G l+  k+++++cr +++ +  ++a  +G++p++  e k d++  s hk  
  MMETSP1061-20121228|24261_1 248 MDDLRAAIRDDTILVSVMAVNNEIGTLQPLKEIGELCRSRKIVFHCDAAQMLGKMPIDVDEYKIDLMSMSSHKIY 322
                  566666666788999999******************************************************964 PP

>> TIGR02326  transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   2.5e-08     7e-06     112     205 ..     243     333 ..     225     339 .. 0.82

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2.5e-08
    TIGR02326 112 keatnvaevekilaadpeithvalvhsetttGilnPieavakvakryGkvlivdamssfGgieidiaeleidylissankciqGvPGfgfviak 205
                  + ++++ ++ +++ +d  +  v  v  e   G l P++++ ++ +   +v   da   +G ++id++e +id +  s+ k i G  G+g +  +
  MMETSP1061-20121228|24261_1 243 TGRVDMDDLRAAIRDDTILVSVMAVNNE--IGTLQPLKEIGELCRSRKIVFHCDAAQMLGKMPIDVDEYKIDLMSMSSHK-IYGPKGIGALYVR 333
                  4567778888888888877766666666..688***************************************99888877.6777777766555 PP

>> TIGR03799  NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   8.9e-06    0.0024     203     303 ..     201     296 ..     190     328 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 8.9e-06
    TIGR03799 203 khygyeglailvserGhyslkkaadvlGiGrdnlvavktd.ennridvdklreklkelkeknikvlaivGvaGttetGnvdPldeladiaqeldchfhvdaa 303
                  ++y+  g  ++ ++  h  +  ++  l +   ++  ++++ ++ r+d+d+lr+ +++     + ++++  +a   e G + Pl+e+ ++++  +  fh daa
  MMETSP1061-20121228|24261_1 201 HFYKKRGKHVITTQTEHKCVLDSCRSLEMEGYDVTYLPVQqSTGRVDMDDLRAAIRDD----TILVSV--MAVNNEIGTLQPLKEIGELCRSRKIVFHCDAA 296
                  5667777777777777777777777777766666666654157899999999887652....233444..45578**************************9 PP

>> TIGR03588  PseC: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.1e-05     0.017      79     162 ..     219     301 ..     183     322 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.1e-05
    TIGR03588  79 tFvAtancalyaGakvvfvdvdkkdgnldekalekklaaaekkkikvivpVdfaGksvdleaiaalakkhglklieDasHalGa 162
                    + +  ++ + G++v++  v++++g +d+++l +++   +  ++ v+++ +  G+   l++i +l+++  +++  Da+  lG 
  MMETSP1061-20121228|24261_1 219 CVLDSCRSLEMEGYDVTYLPVQQSTGRVDMDDLRAAIRDDT-ILVSVMAVNNEIGTLQPLKEIGELCRSRKIVFHCDAAQMLGK 301
                  345577778889*************************9555.777777777788*************************99996 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   7.1e-05      0.02      88     208 ..     171     294 ..     128     299 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 7.1e-05
    TIGR01265  88 keleakleaddvvltsGcsqaielvieala....naganiLvPrPgfplYetlakalglevrkydl..lp..ekdweidldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaD 208
                  +  ++ +++++++ tsG++++ +l i+  a    ++g++++  +  +      +++  le+  yd+  lp  ++  ++d+d+l+a + ++t ++ v+  +n  G+    + l+++ e+++  k++   D
  MMETSP1061-20121228|24261_1 171 RGRKKGVDPKEIIFTSGATESNNLSIKGAAhfykKRGKHVITTQTEHKCVLDSCRS--LEMEGYDVtyLPvqQSTGRVDMDDLRAAIRDDTILVSVMAVNNEIGT---LQPLKEIGELCRSRKIVFHCD 294
                  566778999**********9999999988865557899999999887776666665..6666677655662155679*************************996...588999999999988876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.47u 0.15s 00:00:00.62 Elapsed: 00:00:00.55
# Mc/sec: 1255.10
//
Query:       MMETSP1061-20121228|24259_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.31
# Mc/sec: 2452.44
//
Query:       MMETSP1061-20121228|24263_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   11.0   0.0      0.048   10.7   0.0    1.0  1  TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase


Domain annotation for each model (and alignments):
>> TIGR03023  WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.2e-05     0.048     121     230 ..      17     132 ..      10     141 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.2e-05
    TIGR03023 121 elrkkgvnkrrvvivGagelgerlaealkkeeelglrvlgflddesekaes......evekvpvlgkldelvelireeevdevlialplaaekrikelleeledstvevklvpdlf 230
                  ++ +    ++++ i G +e+  + +++l++e+e   + +++++ + e++ +        ++ + +++ +++ve  +e+ v +   alp++++++i++   + + +t +++++ d  
  MMETSP1061-20121228|24263_1  17 RVLSDPGGTSHICIGGYTEADMERMRKLREEREAAKKNAAVVNMDIENKVKaatnerPRTESETVKDSASVVEKTTEKPVPTTSAALPMQRKTHISSNAFASSSTTNSFNVLTDRP 132
                  55566678899**********9*******99999999999998887666655565554567789999999*************************999988888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 983.32
//
Query:       MMETSP1061-20121228|24264_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 314.26
//
Query:       MMETSP1061-20121228|24262_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   16.2   0.0      0.033   11.6   0.0    2.2  2  TIGR01713 typeII_sec_gspC: general secretion pathway protein C
     0.0041   14.1   1.4       0.71    6.7   0.4    2.1  2  TIGR00225 prc: C-terminal processing peptidase
     0.0081   12.9   0.2      0.053   10.3   0.0    1.9  2  TIGR02037 degP_htrA_DO: peptidase Do
  ------ inclusion threshold ------
      0.018   11.7   1.1       0.55    6.8   0.3    2.3  2  TIGR00054 TIGR00054: RIP metalloprotease RseP
      0.086    9.6   3.4       0.98    6.1   1.0    2.3  2  TIGR02860 spore_IV_B: stage IV sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR01713  typeII_sec_gspC: general secretion pathway protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0     0.031        25     209     237 ..      41      72 ..      11      75 .. 0.80
   2 !   11.6   0.0     4e-05     0.033     193     249 ..     389     445 ..     378     448 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.031
    TIGR01713 209 LqdgDiavalNgl...dlrdeeeakqvlqsla 237
                    +gD +va+Ng+   d  de+ea+ +++sl+
  MMETSP1061-20121228|24262_1  41 VAPGDKIVAINGIpagDFEDEDEANDLIESLR 72 
                  5589********87779999*****9999986 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 4e-05
    TIGR01713 193 yrlnpgkdpslFekvgLqdgDiavalNgldlrdeeeakqvlqslaeetelkltveRd 249
                  y +  ++ + lF k    +gD ++ +Ng+d  +  +++++ + l+ee ++++ veR+
  MMETSP1061-20121228|24262_1 389 YYVRKVPSGGLFAKTPVIPGDKLLEINGIDSHEVKDVNEIKKILKEELKITIVVERK 445
                  7788899999*********************************************96 PP

>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0013         1      69      94 ..      31      55 ..      19      72 .. 0.78
   2 !    6.7   0.4   0.00086      0.71      54     121 ..     379     445 ..     356     467 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0013
    TIGR00225 69 plegsPAekagikpgDkIikvdgksv 94
                 +le +PA +a + pgDkI++++g ++
  MMETSP1061-20121228|24262_1 31 VLESAPA-RARVAPGDKIVAINGIPA 55
                 5678888.79************9754 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00086
    TIGR00225  54 GiqvqmeddeivivsplegsPAekagikpgDkIikvdgk.svagmelddavelirGkkgtkvkleiera 121
                  G++v++++++  + ++  g+  +k+ + pgDk+++++g  s   ++++++ + ++   + k+ + +er+
  MMETSP1061-20121228|24262_1 379 GLKVEKQNGKYYVRKVPSGGLFAKTPVIPGDKLLEINGIdSHEVKDVNEIKKILKE--ELKITIVVERK 445
                  999***********************************835566788888777764..44555555554 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0     0.068        55     364     399 ..      15      54 ..       2      77 .. 0.56
   2 !   10.3   0.0   6.4e-05     0.053     354     427 ..     370     446 ..     346     452 .. 0.67

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.068
    TIGR02037 364 keekkgvvvtkvkkk....spaakaglkkgdvilsvnqke 399
                  +++k+g  vt+++ +    s+ a+a + +gd i+++n  +
  MMETSP1061-20121228|24262_1  15 TKKKSGYTVTEEDDGyvleSAPARARVAPGDKIVAINGIP 54 
                  4455666666655541111344555666666666666544 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 6.4e-05
    TIGR02037 354 seeaakk...kkskeekkgvvvtkvkkkspaakaglkkgdvilsvnqkevksvaelkkvleeakkkervlllvergg 427
                  +++++k+    k ++++    v+kv ++  +ak+ + +gd +l++n  + ++v++++++ + +k++ ++++ ver++
  MMETSP1061-20121228|24262_1 370 TKSNKKQdpgLKVEKQNGKYYVRKVPSGGLFAKTPVIPGDKLLEINGIDSHEVKDVNEIKKILKEELKITIVVERKD 446
                  33333332434445555667888888899999999999998888887666666666666555556667788888765 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0      0.01       8.5     123     164 ..      19      60 ..       8      77 .. 0.75
   2 ?    6.8   0.3   0.00067      0.55     141     212 ..     401     477 ..     380     489 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.01
    TIGR00054 123 knfevkkvieeldknsialeakiedgdeilsvdgkkikdfkd 164
                   +++v ++++    +s+ ++a++++gd+i +++g    df+d
  MMETSP1061-20121228|24262_1  19 SGYTVTEEDDGYVLESAPARARVAPGDKIVAINGIPAGDFED 60 
                  566677777777777788888888888888888887777765 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00067
    TIGR00054 141 leakiedgdeilsvdgkkikdfkdvrkqlaekagevsveilaere........nitleeekelkelgpkielvlsdvvdn 212
                  ++  + +gd++l+++g   ++ kdv++  +  + e+ ++i++er+           ++ + +lke++p  +++l++  d 
  MMETSP1061-20121228|24262_1 401 AKTPVIPGDKLLEINGIDSHEVKDVNEIKKILKEELKITIVVERKdpdasessASSVDYQ-QLKEIKP--NPKLAKYRDD 477
                  6677889*******9999999999997666666899999999777555544333333333.4888888..6777666555 PP

>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0     0.013        11     111     147 ..      20      57 ..      13      81 .. 0.74
   2 ?    6.1   1.0    0.0012      0.98     133     171 ..     407     446 ..     380     455 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.013
    TIGR02860 111 GfsdietekGki.esPaeeagiqvGDlilkvngekike 147
                  G++  e+++G + es  ++a++  GD i+++ng +  +
  MMETSP1061-20121228|24262_1  20 GYTVTEEDDGYVlESAPARARVAPGDKIVAINGIPAGD 57 
                  78888889998734555789************986433 PP

  == domain 2    score: 6.1 bits;  conditional E-value: 0.0012
    TIGR02860 133 vGDlilkvngekikeeedvaklineag.geklkltikRkk 171
                   GD +l++ng + +e +dv+++ +  + + k++++++Rk+
  MMETSP1061-20121228|24262_1 407 PGDKLLEINGIDSHEVKDVNEIKKILKeELKITIVVERKD 446
                  59********999999888877666654567888899987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       201  (0.0490005); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.34
# Mc/sec: 1972.07
//
Query:       MMETSP1061-20121228|24266_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2254.37
//
Query:       MMETSP1061-20121228|24265_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 1958.55
//
Query:       MMETSP1061-20121228|24268_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-09   33.7  21.2    1.5e-08   32.3  14.7    1.7  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter
  ------ inclusion threshold ------
       0.29    7.2   3.2       0.29    7.2   1.0    1.7  2  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.3  14.7   7.1e-12   1.5e-08      56     264 .]     241     466 ..     232     466 .. 0.85

  Alignments for each domain:
  == domain 1    score: 32.3 bits;  conditional E-value: 7.1e-12
    TIGR00950  56 qlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdg.......nlsis.laGlllgllsgisfAlgtvlakrlvkkeglellq.........ftgfvvlliGallllpfalllgpnlqalpatslqwlallyLgligtllayflynkglkevdasaasilalleplvallLgllilgetlslvqliggalilaavl 264
                   +++ + ll +   ++ ++ a  l+ ++ l++ l+s l++ke +  k++++ ++al+G v+l   g         s s + G l++l++++s+ ++    + l+ k++   lq         f++ ++++ +al    +al +   +  +++  + w al++ ++ +  +a +l  k+ k v++s a il  +ep+ a + ++l+lget sl++  gg+lil+a+l
  MMETSP1061-20121228|24268_1 241 WNFLAQGLLNVGLMSTGSGRASFLTQTSVLFTPLISTLIGKEVIGRKVWFGCLVALVGLVVLTVGGgaaagasAFSLSlSRGDLFVLGGALSWSVYLFRISILGPKHPDLVLQgvktglvavFYSIWWMASAALNNGGLALSFSSLPSWMTSSFVVWIALFFSAIGPGTIADVLQQKAQKIVSPSEANILLSAEPVFATVFAVLLLGETSSLLEIAGGGLILVAAL 466
                  567888888888899999999999***********************************9999999776643322222135789********************99985544433333333367788999999988888888888888899999999999999999999******************************************************987 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0     0.054   1.1e+02     389     426 ..      98     135 ..      16     148 .. 0.63
   2 ?    7.2   1.0   0.00014      0.29     522     570 ..     357     406 ..     343     410 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.054
    TIGR00934 389 feksryakksdrneedngnkkdasksneseevsldsee 426
                   ++++++++ ++++ +n  k + ++s +   + +d++e
  MMETSP1061-20121228|24268_1  98 ATRTNFPTRTRKSTLKNHSKESGPSSLTVSATATDENE 135
                  22233333333333333333333333333333333332 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.00014
    TIGR00934 522 kgvsptwwglf.tavsafadlGltltpdsmvsfnkavylLlllilfiiiG 570
                   g+  ++++++  a +a ++ Gl+l  +s+ s  ++++ +++ ++f  iG
  MMETSP1061-20121228|24268_1 357 TGLVAVFYSIWwMASAALNNGGLALSFSSLPSWMTSSFVVWIALFFSAIG 406
                  577778899862677789***************************99888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2385.96
//
Query:       MMETSP1061-20121228|24269_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1447.33
//
Query:       MMETSP1061-20121228|24267_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     6e-104  345.1   0.0   7.4e-104  344.8   0.0    1.1  1  TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase
    0.00023   19.0   0.2    0.00046   18.0   0.1    1.4  1  TIGR00201 comF: comF family protein
     0.0088   13.7   0.0      0.019   12.6   0.0    1.5  1  TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase
  ------ inclusion threshold ------
      0.033   12.1   0.1      0.058   11.3   0.1    1.4  1  TIGR01090 apt: adenine phosphoribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR01251  ribP_PPkin: ribose-phosphate diphosphokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  344.8   0.0  7.2e-107  7.4e-104       2     309 .]     164     480 .]     163     480 .] 0.95

  Alignments for each domain:
  == domain 1    score: 344.8 bits;  conditional E-value: 7.2e-107
    TIGR01251   2 kilsgssskelaekvaknlglelgdvevkkFadgElyvrieesvrgkdvfiivqstsapvndalmellllidalkrasaksvtaviPyygYaRqdkkaksrepisaklvaklleeaGadrvltvdlHseqiqgfFd..vpvenlsaspklieelkkkelknlvvvsPDkGaverakkvakkl.......glelaiieKeRdskenevevtnllgdvegkdvvivDDiisTggTlvkaaelLkekGAkkvivaathgvfsgdAlerlaeagveevivtntilv.ee.kklpkvseisvapliaeaiarihenesvsslfd 309
                  k++sg+ + +l+ +++++lg++lg+++v +FadgE +v ++e+vrgkd+++i q t++pvnd++melll++++l+rasa+++t+viPyygYaRqd+k++ r pisa  va+l+e++G+drv++vdlH  qiqgfF   vpv+nl++  + ++++ +k l+n+v+vsPD+G+v rakk+ + l       +  la+i K+R  ++  v++++l+gdv++ d+++vDD+i+T+gTl+kaa++L e+GA++v++ a+hg++sg+  erla++ +ee+++ nti++  + ++ +k++ +svapl+a+ai++ih+++s+s+lf+
  MMETSP1061-20121228|24267_1 164 KLFSGNGNLALSLEICRHLGINLGKATVGRFADGEANVVVHENVRGKDCYVI-QPTCPPVNDNIMELLLMVSTLRRASARRITVVIPYYGYARQDRKMQARVPISAADVARLIEAMGVDRVIAVDLHCGQIQGFFGprVPVDNLDGGIVGLDYFGSKDLHNPVIVSPDAGGVYRAKKFKEGLmhkydmqDIGLAMIVKQRA-RAGLVDTMDLVGDVKNCDCILVDDMIDTAGTLCKAADVLIENGARRVFAFASHGLLSGPGNERLANSKMEEIVILNTIPTsPQrEANEKLTMLSVAPLLAQAIFNIHAKKSISALFK 480
                  79**************************************************.**********************************************************************************888****************************************99883322222245789******.666*****************************************************************************8556999****************************96 PP

>> TIGR00201  comF: comF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   4.5e-07   0.00046     150     186 ..     377     413 ..     357     415 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 4.5e-07
    TIGR00201 150 vqgrkivlvDDvvttGatlaeiaklllklgaaevqvl 186
                  v+    +lvDD++ t  tl+ +a++l+++ga +v  +
  MMETSP1061-20121228|24267_1 377 VKNCDCILVDDMIDTAGTLCKAADVLIENGARRVFAF 413
                  667788**************************99876 PP

>> TIGR01203  HGPRTase: hypoxanthine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.9e-05     0.019      78     115 ..     372     409 ..     359     415 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.9e-05
    TIGR01203  78 dldedikdkdvLlveDivdtgltlkellellkarkpks 115
                  dl  d+k+ d +lv+D++dt+ tl +  ++l +++++ 
  MMETSP1061-20121228|24267_1 372 DLVGDVKNCDCILVDDMIDTAGTLCKAADVLIENGARR 409
                  67789***********************9999888876 PP

>> TIGR01090  apt: adenine phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   5.7e-05     0.058     110     139 ..     380     410 ..     368     440 .. 0.67

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.7e-05
    TIGR01090 110 krvlivDDllAtgGtv.eAaleLikklgaev 139
                    +++vDD++ t+Gt+ +Aa+ Li++   +v
  MMETSP1061-20121228|24267_1 380 CDCILVDDMIDTAGTLcKAADVLIENGARRV 410
                  469************8356666666544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 1979.84
//
Query:       MMETSP1061-20121228|24271_1  [L=229]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0014   15.8   0.0      0.037   11.1   0.0    2.0  2  TIGR03211 catechol_2_3: catechol 2,3 dioxygenase


Domain annotation for each model (and alignments):
>> TIGR03211  catechol_2_3: catechol 2,3 dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.0    0.0034        14       7      35 ..      89     117 ..      85     127 .. 0.81
   2 !   11.1   0.0   9.1e-06     0.037     209     264 ..     155     213 ..     146     222 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0034
    TIGR03211   7 hvelrvldleealkfykdvlGleetgrde 35 
                  h +  v  le+a +fy +vlG ee + ++
  MMETSP1061-20121228|24271_1  89 HYAFPVHSLEAAKEFYGTVLGCEEGRSSD 117
                  66777999*************99876655 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 9.1e-06
    TIGR03211 209 hHvsflldswedvlkaaDvlskndvkidvgpt.rHgit..rgqtiYvfdPsGnrvElfa 264
                   H+  +l++ e+ ++  D l++++v + + p+ r      +  t+++ dPsGn +E  a
  MMETSP1061-20121228|24271_1 155 PHAGLALETVEQFNDLVDRLRSHNVDFVIEPHlRFQGEpgEQYTMFFKDPSGNNLEFKA 213
                  599999***********************998444444114469***********9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (229 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1373.89
//
Query:       MMETSP1061-20121228|24270_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-19   69.0   0.1    4.4e-09   34.2   0.0    2.2  2  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    6.5e-19   66.0   0.2    2.4e-09   35.3   0.1    2.7  3  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    6.2e-10   37.0   0.0    3.7e-07   28.1   0.0    2.6  2  TIGR01068 thioredoxin: thioredoxin
     0.0013   16.3   0.0     0.0027   15.2   0.0    1.5  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
     0.0037   14.7   0.2      0.011   13.1   0.1    1.8  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.7   0.1   1.5e-11   1.2e-08       5      49 ..      74     118 ..      70     124 .. 0.75
   2 !   34.2   0.0   5.4e-12   4.4e-09      51     105 ..     147     205 ..     141     217 .. 0.90

  Alignments for each domain:
  == domain 1    score: 32.7 bits;  conditional E-value: 1.5e-11
    TIGR01130   5 eltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkk 49 
                  ++ +  ++++ k++++v v F+A WC HC+ LaP +e   e++ +
  MMETSP1061-20121228|24270_1  74 SMDEAILEEYKKNHDYVFVDFFASWCSHCQDLAPTWEVLGEIMTE 118
                  566667788888899999999999999999999988876666655 PP

  == domain 2    score: 34.2 bits;  conditional E-value: 5.4e-12
    TIGR01130  51 spkvklakvDateekelaq.kygvsGyPtLkifrnge...sssdYnGpReaegivkylk 105
                  + +v ++kvD+  +k+l++ k +++ yPtL++f +g+     sdY+G R+  ++v++l 
  MMETSP1061-20121228|24270_1 147 NKPVIIGKVDCVVQKNLCNvKQDIRAYPTLRLFIDGKawaGGSDYKGHRTVMEMVDWLM 205
                  56899*************8699***************877789**************96 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       2.8   2.3e+03      79      99 ..      32      53 ..      15      55 .. 0.64
   2 !   35.3   0.1     3e-12   2.4e-09       9      47 ..      82     120 ..      72     136 .. 0.81
   3 !   27.7   0.0   6.5e-10   5.4e-07      47     102 ..     147     205 ..     133     208 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 2.8
    TIGR01126 79 kkgkkepvdyeG.eReaeelve 99
                  +g+  ++ y+G +R++++++ 
  MMETSP1061-20121228|24270_1 32 IDGDGIRKGYKGrNRNQKDIEM 53
                 4455567788986688888765 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 3e-12
    TIGR01126   9 lvldenkdvlvefyaPWCGhCkklaPeyeklakelkkee 47 
                    +++++ v+v+f+a WC hC++laP++e l++ +++++
  MMETSP1061-20121228|24270_1  82 EYKKNHDYVFVDFFASWCSHCQDLAPTWEVLGEIMTEAS 120
                  34457889***********************99998765 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 6.5e-10
    TIGR01126  47 eekvkiakvdataekelas.kfkvsgfPtlkffkkgkke..pvdyeGeReaeelvefve 102
                  ++ v i+kvd+ ++k+l++ k +++++Ptl++f +gk+    +dy+G+R+  e+v+++ 
  MMETSP1061-20121228|24270_1 147 NKPVIIGKVDCVVQKNLCNvKQDIRAYPTLRLFIDGKAWagGSDYKGHRTVMEMVDWLM 205
                  3479**********998764899*************9865579*************986 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   4.5e-10   3.7e-07       8      51 ..      81     123 ..      74     135 .. 0.75
   2 !    6.0   0.0    0.0034       2.8      43      82 ..     146     186 ..     140     204 .. 0.77

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 4.5e-10
    TIGR01068   8 etvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvK 51 
                  e+ ++++  v vDf+A+WC  C+ laP+ e l  e  +++++ +
  MMETSP1061-20121228|24270_1  81 EEYKKNHDYVFVDFFASWCSHCQDLAPTWEVLG-EIMTEASHSR 123
                  556677779******************999877.4444555555 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0034
    TIGR01068  43 leekvkvvKlnvdeeqei.aakygirsiPtlllfkngkevk 82 
                  +++ v + K++   ++++   k +ir+ Ptl lf +gk  +
  MMETSP1061-20121228|24270_1 146 VNKPVIIGKVDCVVQKNLcNVKQDIRAYPTLRLFIDGKAWA 186
                  566788999997777666157899*************9765 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.3e-06    0.0027      35      72 ..      72     109 ..      51     117 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.3e-06
    TIGR02738  35 taaqdekpvgrkvlledyklvlfyqstCpyChqfapvL 72 
                    + de+ ++   + +dy +v f+ s C++C+  ap+ 
  MMETSP1061-20121228|24270_1  72 AMSMDEAILEEYKKNHDYVFVDFFASWCSHCQDLAPTW 109
                  33444444455667889*******************86 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.56   4.6e+02     126     172 ..      14      59 ..       9      60 .. 0.79
   2 !   13.1   0.1   1.4e-05     0.011      50      84 ..      75     108 ..      41     119 .. 0.70

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.56
    TIGR00385 126 kGklaldlGvygaPetflvdgnGviryrhaGdlnkevwkeellPkle 172
                     l+ d  v++    + +dg+G ir  + G   +++  e + P++e
  MMETSP1061-20121228|24270_1  14 VSVLGTDQNVTAHVTKWNIDGDG-IRKGYKGRNRNQKDIEMFDPQIE 59 
                  55678888899999999999999.67788888888888888888887 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 1.4e-05
    TIGR00385  50 ekvqlltaevlkkgklvLlnvwasWCptCraehpl 84 
                   +  +l+ e  k+ + v ++++asWC+ C++  p+
  MMETSP1061-20121228|24270_1  75 MDEAILE-EYKKNHDYVFVDFFASWCSHCQDLAPT 108
                  3334555.667777899************997765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.25
# Mc/sec: 2455.00
//
Query:       MMETSP1061-20121228|24273_1  [L=762]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (762 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.52
# Mc/sec: 1934.15
//
Query:       MMETSP1061-20121228|24272_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2597.36
//
Query:       MMETSP1061-20121228|24275_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.9e-108  359.3   0.0   4.9e-108  358.5   0.0    1.3  1  TIGR00677 fadh2_euk: methylenetetrahydrofolate reductase
    5.1e-78  260.0   0.0    4.1e-38  129.1   0.0    2.1  2  TIGR00676 fadh2: 5,10-methylenetetrahydrofolate reductase
      0.001   17.0   0.4     0.0021   16.0   0.2    1.5  1  TIGR00739 yajC: preprotein translocase, YajC subunit


Domain annotation for each model (and alignments):
>> TIGR00677  fadh2_euk: methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.5   0.0  3.6e-111  4.9e-108       2     276 ..      26     336 ..      25     340 .. 0.95

  Alignments for each domain:
  == domain 1    score: 358.5 bits;  conditional E-value: 3.6e-111
    TIGR00677   2 fsfeffpPkteeGvenllerldrmeal.gPlfidvtWgaGgstaeltleiaslaqnvvevetilhltctnmev.....ekiddalekakeaGiknilalrGdpPkkdedfeeveggfkyavdlvkyirskygdkfaigvagyPeahpea...............................eavekdleylkkkvdaGadlivtqlfydvdkflkfvkkvreigidvPivPGimPinsyksflrlvklskvkiPqeilsalepikdddeavreiGielivelckkllasgvkslhlytlnlekaaleilerlg 276
                  +s+effpP+te+Gv+nl+ r++rm+a+ +Plf dvtWgaGgsta+lt++ia++++++ +v   +h+tctnme+     + + +ale+ak++Gi ni+alrGdp +++e+++  +ggf++a+dlv+yir+++g  f+i+vagyPe+hp+a                               ++++k+++ylkkk+daG+d+i+tq+f+d+  f +fv+++r+ gi++P+vPG+m in+y++f++++k++k+++P+e+ ++++ +kdd + ++++Gie+ +++ck+l++ gv  lh+ytlnlek++  il  lg
  MMETSP1061-20121228|24275_1  26 VSIEFFPPRTETGVKNLYARMERMKASiNPLFSDVTWGAGGSTADLTIDIAQQLKKTGHVA-NMHMTCTNMEKdgdpkKAVHSALETAKNNGIVNIVALRGDPAHGQEEWTAADGGFTCALDLVEYIRENFGSDFGISVAGYPEGHPNAislvedpstlsesekarcstddegkvytcldDDYKKEMDYLKKKIDAGGDFIITQMFFDTKVFGTFVEDCRKWGINCPVVPGLMCINAYAGFVKMTKFCKTRVPTELRAKMDSLKDDPDGIKAFGIEFGTQMCKDLIEIGVDVLHFYTLNLEKTTYGILDGLG 336
                  79**********************8766***************************999886.69*******7622222689********************************************************************9*************99999999999999998889****************************************************************************************************************************99877 PP

>> TIGR00676  fadh2: 5,10-methylenetetrahydrofolate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.0   0.0   3.2e-41   4.4e-38       1     154 [.      26     185 ..      26     195 .. 0.89
   2 !  129.1   0.0     3e-41   4.1e-38     144     273 ..     206     334 ..     204     336 .. 0.97

  Alignments for each domain:
  == domain 1    score: 129.0 bits;  conditional E-value: 3.2e-41
    TIGR00676   1 lSfEffpPkteegeeklletveeLk.elkpkfvsvTygaggstrertveivkaikketkletvaHltcvgatr.....eeieeilkelkelgikkllaLRGDipkeekefekeekgleyAseLvelireekk.dfeigvaaYPekHpeaknleediknlkr 154
                  +S EffpP+te+g+++l++ +e++k +++p f +vT gaggst + t++i++++kk+ ++ +  H+tc ++++     + ++++l++ k++gi +++aLRGD+++ ++e++ +++g++ A +Lve+ire+++ df i+va+YPe+Hp+a +l ed + l +
  MMETSP1061-20121228|24275_1  26 VSIEFFPPRTETGVKNLYARMERMKaSINPLFSDVTWGAGGSTADLTIDIAQQLKKTGHV-ANMHMTCTNMEKdgdpkKAVHSALETAKNNGIVNIVALRGDPAHGQEEWTAADGGFTCALDLVEYIRENFGsDFGISVAGYPEGHPNAISLVEDPSTLSE 185
                  699*********************8358***************************76655.667*****99862222268*************************************************96559********************9888864 PP

  == domain 2    score: 129.1 bits;  conditional E-value: 3e-41
    TIGR00676 144 nleediknlkrKvdaGadsaitQlFfdnddyfrfvdrvraagievpiipGimpitnlkqllrlleklsgveiPeklvkeleklendkeevrevgievaveqveeLlaegvpglHfytlnkaeatkeilen 273
                  + ++++++lk+K+daG d +itQ+Ffd++ + +fv+ +r+ gi+ p++pG+m i+      ++++  +++++P +l +++++l++d++ ++++gie+ ++++++L++ gv+ lHfytln  ++t+ il+ 
  MMETSP1061-20121228|24275_1 206 DYKKEMDYLKKKIDAGGDFIITQMFFDTKVFGTFVEDCRKWGINCPVVPGLMCINAYAGFVKMTK-FCKTRVPTELRAKMDSLKDDPDGIKAFGIEFGTQMCKDLIEIGVDVLHFYTLNLEKTTYGILDG 334
                  67899************************************************************.999*******************************************************999875 PP

>> TIGR00739  yajC: preprotein translocase, YajC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   1.5e-06    0.0021      40      76 ..     361     398 ..     353     405 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.5e-06
    TIGR00739  40 kGdkVltigGligtvtkiaent.ivieladntkitisk 76 
                   GdkV t+ G+ gtvt+i+ +   +ie + +t ++  k
  MMETSP1061-20121228|24275_1 361 VGDKVKTNEGVEGTVTAIESDGtATIEFEGETPTVTLK 398
                  7*****************87655999998877655444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.23
# Mc/sec: 2329.89
//
Query:       MMETSP1061-20121228|24274_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    4.7   8.5        3.6    3.5   5.9    1.5  1  TIGR00833 actII: transport protein


Domain annotation for each model (and alignments):
>> TIGR00833  actII: transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.5   5.9   0.00088       3.6     465     643 ..       7     197 ..       3     213 .. 0.60

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.00088
    TIGR00833 465 ktkvsfqagelgdkldeatklleerldqllqdaeklaeaiaalrllqalmdllg............enasqvvlavralq.dalsklrdeaedvadiasPlrsalaaepeCrsdPvCrtar..eivqaaddvvevaakladevgdlartvatldsalkqvssllkaldglrtklaqmresaagvadlln....eLsDy 643
                   t vsf+a  + +   +a + +++r + + + +e+ +    al+ ++a+m+++g             ++++v++ + ++  + l+k  +ea d++   + + ++l  + e     + +t      v+a + + + +a      +++++ + ++++ l +   +  a +g+++   ++ +   ++ d ++    eLsD+
  MMETSP1061-20121228|24274_1   7 STLVSFSAVAVSSVSGQAFTAKKKRGASFQELNEQAKTGGGALGDMDAMMKQMGvnpedlkgmmdlPELDEVMKMMAEMSpEDLAKQMQEAMDMFGGDDMMANMLGHQDE-----ILKTLEetGAVDAEE-LAKFKADPEYFEQKMKESMDQMKELLGDPEMMASAAEGMKAA-QNLYNNPDAINDMMAdmmkELSDE 197
                  67899*********************************99**************77777766666656666666666665345667777777776666666666654433.....333333112233322.222233333334444444444444444444455555555432.122223333333333333466554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       362  (0.0882496); expected 82.0 (0.02)
Passed bias filter:                      227  (0.0553389); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1239.75
//
Query:       MMETSP1061-20121228|24277_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   14.7   0.1     0.0066   13.3   0.1    1.5  2  TIGR03828 pfkB: 1-phosphofructokinase
     0.0065   13.2   0.1      0.014   12.1   0.1    1.5  2  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family


Domain annotation for each model (and alignments):
>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.2   0.0      0.17   3.6e+02     219     247 ..      72     101 ..      71     103 .. 0.77
   2 !   13.3   0.1   3.2e-06    0.0066      71     124 ..     154     206 ..     146     213 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.2 bits;  conditional E-value: 0.17
    TIGR03828 219 slGadGallvtkegalfakapkie.vkstv 247
                  + G+dG ++++++++l+ + ++i+    tv
  MMETSP1061-20121228|24277_1  72 TYGSDGIIVCRQKNSLQFSKINIReYSRTV 101
                  6799********999998888776244455 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 3.2e-06
    TIGR03828  71 eeegiktdfvevkgetRinvkikessgeetklnepGpeis.eeeleallekleeq 124
                   + ++++   ++ + +R+nvkik  +++ t +n+ G + + ee +e +l+kl++ 
  MMETSP1061-20121228|24277_1 154 LRFECNASRKDITESVRQNVKIK--HQRRTTINNLGKAEKlEELIESVLRKLRRL 206
                  556777888899***********..799********7655344455555555554 PP

>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.25   5.1e+02     219     243 ..      72      96 ..      72     102 .. 0.73
   2 !   12.1   0.1   7.1e-06     0.014      65     126 ..     148     208 ..     145     214 .. 0.76

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.25
    TIGR03168 219 SlGadGallvtkegalkaeapkvev 243
                  + G+dG +++++++ l+ + ++++ 
  MMETSP1061-20121228|24277_1  72 TYGSDGIIVCRQKNSLQFSKINIRE 96 
                  57999****9999998887777763 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 7.1e-06
    TIGR03168  65 fiealleeegikadfvevkgetRinvkikessgeetelnepGpeiseeel.eallekleellk 126
                  ++++ + + +++a+  ++ +++R+nvkik  +++ t +n+ G + + eel e +l+kl++l++
  MMETSP1061-20121228|24277_1 148 YLREDILRFECNASRKDITESVRQNVKIK--HQRRTTINNLGKAEKLEELiESVLRKLRRLMT 208
                  66777777888999999************..999999*****765555443666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1324.97
//
Query:       MMETSP1061-20121228|24278_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-08   32.0   0.0    1.2e-07   29.4   0.0    1.9  2  TIGR02410 carnitine_TMLD: trimethyllysine dioxygenase
    4.8e-05   20.4   0.0    9.9e-05   19.3   0.0    1.5  1  TIGR03946 viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent
    5.7e-05   20.1   0.1    0.00019   18.4   0.0    1.7  2  TIGR02409 carnitine_bodg: gamma-butyrobetaine hydroxylase


Domain annotation for each model (and alignments):
>> TIGR02410  carnitine_TMLD: trimethyllysine dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0     0.072        99     179     224 ..     199     244 ..      94     258 .. 0.65
   2 !   29.4   0.0     9e-11   1.2e-07     309     352 ..     374     417 ..     362     420 .. 0.84

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.072
    TIGR02410 179 issHtDgtYfeetpGlqlFHlLkhdgtGGetvlv.Dvfkvaeklkkk 224
                  i+ H ++t  + t+    F + +++ +GG   lv D++ ++ +l  k
  MMETSP1061-20121228|24278_1 199 IGLHSESTT-KRTAAYAAFVCFQKATEGGGRFLVaDGAAILAELDTK 244
                  555555553.5566677889999988776555544888888877655 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 9e-11
    TIGR02410 309 penevevklkpGevlifDnwRvlHaRtsFtGkRrlCGaYltRDd 352
                  ++    + ++pG+vl++Dn+R lH+R+ F+G R    +++t Dd
  MMETSP1061-20121228|24278_1 374 EKHITALAMEPGDVLLVDNYRALHGRDVFQGDRYHAVSWFTWDD 417
                  34445689*************************99999999888 PP

>> TIGR03946  viomycin_VioC: arginine beta-hydroxylase, Fe(II)/alpha-ketoglutarate-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.2e-08   9.9e-05     265     300 ..     369     404 ..     351     414 .. 0.81

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 7.2e-08
    TIGR03946 265 liklidaklrevvldqGdvafidnrravhGrrafra 300
                  + +  + ++  + +++Gdv+++dn+ra+hGr  f+ 
  MMETSP1061-20121228|24278_1 369 IKRASEKHITALAMEPGDVLLVDNYRALHGRDVFQG 404
                  55556677888999********************95 PP

>> TIGR02409  carnitine_bodg: gamma-butyrobetaine hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0      0.17   2.3e+02     206     230 ..     217     242 ..     205     248 .. 0.78
   2 !   18.4   0.0   1.4e-07   0.00019     314     355 ..     378     416 ..     362     419 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.17
    TIGR02409 206 hclestveGGdsllv.DGFavaeaLr 230
                   c ++++eGG   lv DG a+ ++L 
  MMETSP1061-20121228|24278_1 217 VCFQKATEGGGRFLVaDGAAILAELD 242
                  58888888876655449999988875 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 1.4e-07
    TIGR02409 314 ltfkleeGdlvlfdntRllHaRdafeakegkRhlqGaYaDkD 355
                      +e+Gd++l+dn R lH+Rd f+   g+R+   +++ +D
  MMETSP1061-20121228|24278_1 378 TALAMEPGDVLLVDNYRALHGRDVFQ---GDRYHAVSWFTWD 416
                  34689********************9...7777776666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 2605.35
//
Query:       MMETSP1061-20121228|24279_1  [L=972]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-06   22.7 102.5    4.2e-05   19.2  33.7    3.0  3  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      1e-05   21.3 114.0    0.00011   17.8  32.5    3.2  3  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6  31.8   3.3e-08   6.7e-05     650     946 ..      33     336 ..      31     355 .. 0.81
   2 !   19.2  33.7   2.1e-08   4.2e-05     229     500 ..     340     615 ..     328     638 .. 0.86
   3 !    0.5  10.8    0.0091        19     667     862 ..     570     766 ..     559     810 .. 0.62

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 3.3e-08
    TIGR02169 650 lekSGaitGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerlee.....leeklseleeeleekk.eelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnkle.lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev.keeee 946
                  +   G+ tGGs ++ + + v+++ k   + l++++++L++el++   + + ++ ++++ + + + a+ ++ e +++ e+l++e++ l+  +e      le +  + e+ +++++ e++k l++ei+eleekl+  + +l +le   +++k+ee ++e+e l ++ +  e++l+   a+l+k+  +++e++++  +  ++  +e e + k++e+e e+  ++    ee++++++ a + L +e++  + e  e e+  +el ++ e+le ++++   +l  ++a+ + l+++l++  +e+ ++++ 
  MMETSP1061-20121228|24279_1  33 FATTGVETGGSASNGFDHEVETAVKLATAPLHQEIDSLKDELDFFELKHETLQAASEHFRVQSKSAKSQLDEERSRYEILASEKRSLETSIESrlanaLELQKANFEDTIAAAHiEKQKLLAKEIQELEEKLQLSEYKLSSLEGA-AKKKVEEGSKEYELLAAKKNVTEGKLRGEIADLSKRLsFSEEQAKSFEDSWKRILAESERKDKSLENESEKRIKEASRWEERMQKIKHASEILLNEKQAKEGELIESEKRHKELLSQTETLEKAMKQYDAQLTLQTAENQRLSNDLNSKASELaQSKKT 336
                  5668999****9999999999999999999****************************************************99999888875211113334445566666655155666899*******************976.567899999999999999999999998555555554449999999999999999999999999999999999999999999999999999999999998899999999999999999999999998888888888888888888777666655444444 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 2.1e-08
    TIGR02169 229 llkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkie...klgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelk..reldrlleelkr..leeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqa 500
                  l+  +e l+   ek+e  l +++ee+++  +++++le+el  +  +le+ ++k +   ++++e   a +  leel+++   l++++ + + ele+ +++ + + ++id+++ e+e++++++ + + + +k+ke ++    + ++lr++l+++++++  l++ l   k + e+l+ e + l+  +++++l++  ++  le e +e+ + ++ +e+++++     + + +e++  +++l++++    ++++ ++  k+e + l ++l++ e+el+ l+ + 
  MMETSP1061-20121228|24279_1 340 LVDDYEGLRDLHEKTELTLTSVREEQKENVAKRSALENELVDVLVQLETSQNKTKqliEKTSETNKAYTLALEELSSKNDVLRNEVVDVKFELERRQNETQSLMQRIDEVNIEKEKIQTKLLAANLNTKKIKETFER---TVQDLREDLDSKNAKNSYLQRTLLLTKDAFEDLQTEVKRLEdqNNKKKLIDDEQKesLETENKEIAQRVKVLEQELEKASYLYDGVSHEVHSLKGQLKTAESRSVELSRMYETMKQENDILTRNLRATEKELDDLKSSS 615
                  5677778888889999999999999999999999999999999999987765544111678999999999**************************************************************99965...67889999999999999999999999999999999988775115677787765551267888999********************************************************************998764 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.0091
    TIGR02169 667 elvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkiee..iekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelse.ekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelka 862
                  +++ +  + ++ +l++  e +++e + l+++lr  ek+ld+l+s+  +a    ++  + ++  +++e++ +++ +  +   +++ +  e e + +++ e++++  +     +k     ed+e++ se e + +++ e+++ + + s   ++  +i+++++++  e e++ +   e+++e + +   + e+e  ie++ +
  MMETSP1061-20121228|24279_1 570 KGQLKTAESRSVELSRMYETMKQENDILTRNLRATEKELDDLKSSSLEAASLAHNpdLTNQKVEVDEDNMESS-ESLDHDVDIKGTASETESVSNSQVEVNERDVKGPVVGEKEGSTDEDIEDKASEpESVSNSQVEVDESHVKGSVFGKKEGSIDQDIKEKASETESAANPQ-EEVDESDVTGPVIGENEGSIEQDIK 766
                  4444555566667888888888888888888888888888877665555544444003344434444444444.444667778888888888888888888777777777777777778888776542667777777777777777777778888888888876666665443.3333334444444444444444433 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3  21.4   1.1e-05     0.022     686     897 ..      58     266 ..      32     273 .. 0.66
   2 !   17.8  32.5   5.6e-08   0.00011     691     947 ..     203     460 ..     185     464 .. 0.71
   3 !    5.1  24.6   0.00039      0.79     679     998 ..     476     788 ..     464     795 .. 0.49

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.1e-05
    TIGR02168 686 eeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelree 897
                    ++ l ++i++l++el+  e ++e+l+ + e+ r ++++++ +l+e+++++e l +e ++le  ++++ ++  el++   e  + ++ a+ e+ k   +ei+ele++++  + +l++l+ a +++ +e + e +  aa+k+ +  +l+ eia+l+k+l   eeq+++ e++ +++ ae e+ +++le   +e e+  ke ++ ee++++++++
  MMETSP1061-20121228|24279_1  58 LATAPLHQEIDSLKDELDFFELKHETLQAASEHFRVQSKSAKSQLDEERSRYEILASEKRSLETSIESRLANALELQKANFE--DTIAAAHIEKqKLLAKEIQELEEKLQLSEYKLSSLEGAAKKKVEEGSkEYELLAAKKNVTEGKLRGEIADLSKRLSFSEEQAKSFEDSWKRILAESERKDKSLE---NESEKRIKEASRWEERMQKIKHA 266
                  4456678888888888888888888888888888888888888888899999998888888888887777666666554433..33333333332556677888888888888888877777777766666455666666666777788888888888888888888888888877777666666544...33333333333344455544444 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 5.6e-08
    TIGR02168 691 leekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelre....eleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerl 947
                  l  +ia+l+k+l+  e++ ++ e+  + +   l e+erk ++l++e e+  ke+ ++eer+++++++ e l +e++++e el e+e++ ke  ++ e+le+ ++q+ ++l+ ++++ ++l+++l++  +e+a+ +++++ l ++ + l++  e++e ++ + +ee++++ a+ + le+el +   +le  +++ ++l e+ +e ++    +leels++ + l+++v + + ele+++++ ++l +r++e+++e +++q++l
  MMETSP1061-20121228|24279_1 203 LRGEIADLSKRLSFSEEQAKSFEDSWKRI---LAESERKDKSLENESEKRIKEASRWEERMQKIKHASEILLNEKQAKEGELIESEKRHKELLSQTETLEKAMKQYDAQLTLQTAENQRLSNDLNSKASELAQSKKTYAGLVDDYEGLRDLHEKTELTLTSVREEQKENVAKRSALENELVDVLVQLETSQNKTKQLIEKTSETNKaytlALEELSSKNDVLRNEVVDVKFELERRQNETQSLMQRIDEVNIEKEKIQTKL 460
                  44566666666666666666666444443...4444555566666677777888889999999999999999999999999999999999999999999999999999999999999999998888888888888888888888887777777777777777777777777777777766666666666665555555555544441111456778888888888888888888888888888888888888888888776 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.00039
    TIGR02168 679 keieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeele.eleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleek..veeeeeeaeeelk.rleekikeLGpVNlaAieEye 998
                  + +++l+e+++  ++k + l+++l  +++++e+l++e++ l+++ +++ + +   +++ e+le+e +++++r++ le+ele++       ++e+++++ +lk+ae++++el++ +e++k+e + l+++l+++e+el++lk++  e    ++sl ++ + +++++e  e+++e+     esl + ++   ++ e e+ ++ +   +e++ +   + e + + +e  e+  +  + v++ + e++e   k + + ++  +++++i+e +++ ++ ++ + e+ e+ +    + e+e ++e+++k + +++ + L + N +AieE e
  MMETSP1061-20121228|24279_1 476 RTVQDLREDLDSKNAKNSYLQRTLLLTKDAFEDLQTEVKRLEDQNNKK-KLI--DDEQKESLETENKEIAQRVKVLEQELEKASYLYDGVSHEVHSLKGQLKTAESRSVELSRMYETMKQENDILTRNLRATEKELDDLKSSSLE----AASLAHNPDLTNQKVEVDEDNMESS----ESLDHDVDIKGTASEtESVSNSQVEVNERDVKGPVVGEKEGSTDEDIEDKASEPESVSNSQVEVDESHVKGSVFGKKEGSIDQDIKEKASETESAANPQEEVDESDVTGpvIGENEGSIEQDIKtKARNETEPLIQDNATAIEEGE 788
                  224444444555555555555555555555555554444444444442.222..2345556666677777777777777777777777777777777777777777777777777777777777777777777777777777764....3334444444444333333332222....22222222222211112222222222333223333333333333333333333444455555555555555555556666666666555555555555555554444434444444556666642456666666666666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (972 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       549  (0.133837); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.97u 0.15s 00:00:01.11 Elapsed: 00:00:00.65
# Mc/sec: 1973.74
//
Query:       MMETSP1061-20121228|24281_1  [L=468]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (468 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       317  (0.0772794); expected 82.0 (0.02)
Passed bias filter:                      218  (0.0531448); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.41
# Mc/sec: 1506.61
//
Query:       MMETSP1061-20121228|24280_1  [L=782]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 3127.74
//
Query:       MMETSP1061-20121228|24284_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00096   16.3   0.0     0.0016   15.6   0.0    1.3  1  TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent


Domain annotation for each model (and alignments):
>> TIGR01772  MDH_euk_gproteo: malate dehydrogenase, NAD-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.8e-07    0.0016       2     103 ..      59     178 ..      58     189 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.8e-07
    TIGR01772   2 vavlGaaGGiGqsLsLLLkaqpkvs..................eLaLyDikeaaGvaaDLshidtkasvkgfseeeglenalknadvvvipaGvprkPG..ltrdDLfkvnagivkelvaav 103
                  vav+Ga+G +G+ ++L L    kv+                  +++L++      v+       t+++   fs  e+l  al+na+ vvi  G +  P     r+  f v + +++ l+++ 
  MMETSP1061-20121228|24284_1  59 VAVVGASGNVGKLVALRLSDTYKVNgivrdassvqsffegredNISLFETDLLEEVTSKAT--TTTTTNERFSCPESLYPALSNANAVVICTGTTAFPTkaWSRSGEFSVTSEVLSALADSK 178
                  9********************99999****************99****9998889987654..566677899*99******************99888522578999999999988888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 1974.34
//
Query:       MMETSP1061-20121228|24285_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-26   89.3   1.9    2.2e-25   86.6   1.3    2.0  1  TIGR03422 mito_frataxin: frataxin
      2e-18   64.1   0.2    7.7e-17   59.0   0.2    2.3  1  TIGR03421 FeS_CyaY: iron donor protein CyaY


Domain annotation for each model (and alignments):
>> TIGR03422  mito_frataxin: frataxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   1.3   1.1e-28   2.2e-25       1      87 [.      85     179 ..      85     181 .. 0.80

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 1.1e-28
    TIGR03422   1 eyekvadetlekllekleeleeea...........eeleldveysagvltlelkevGtyvinkqpPnkqiWlssPvsGPkrydlvveaegeWvylrdg 87 
                  ey++vadetle++++++e   e++           +e e +v +++gvltl+l+ +Gt+v+nkq+Pn+qiW ssP+sGP+ry++     +eWvy+r g
  MMETSP1061-20121228|24285_1  85 EYHSVADETLEEIQDAVEMAIEDHcdeiiasntteSEEEPEVVFASGVLTLTLPPHGTWVLNKQTPNQQIWWSSPLSGPRRYEYD---GEEWVYTRAG 179
                  7*************99987655431111111111123347899******************************************...79****9987 PP

>> TIGR03421  FeS_CyaY: iron donor protein CyaY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.2   3.8e-20   7.7e-17       1      84 [.      82     180 ..      82     181 .. 0.86

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 3.8e-20
    TIGR03421   1 nesefhqlvealleaieealdkl..............eedaDidveraggvltlefedkskiiinkqeplkeiWlaak.sggfhfeykekkWvdtrdge 84 
                  nese+h +++++le+i++a++ +              e++ + +v +a+gvltl++  + + ++nkq+p+++iW +++ sg+ ++ey++++Wv+tr ge
  MMETSP1061-20121228|24285_1  82 NESEYHSVADETLEEIQDAVEMAiedhcdeiiasnttESEEEPEVVFASGVLTLTLPPHGTWVLNKQTPNQQIWWSSPlSGPRRYEYDGEEWVYTRAGE 180
                  799***********9999988666554555565555555557789999******************************9*****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1222.33
//
Query:       MMETSP1061-20121228|24282_1  [L=742]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-30  102.6  10.4    8.5e-18   62.1   0.5    3.0  3  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
    6.5e-15   51.9  12.4    6.3e-08   28.8   1.2    2.3  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    8.2e-15   52.6  10.9    0.00095   16.7   0.4    4.5  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    9.8e-09   32.9  15.1    1.9e-05   22.2   3.5    3.2  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.1   0.5   8.3e-21   8.5e-18      99     243 ..     337     482 ..     292     486 .. 0.83
   2 !   43.9   0.3   2.7e-15   2.7e-12      90     199 ..     507     619 ..     498     628 .. 0.86
   3 !    3.5   0.1    0.0047       4.8     334     390 ..     617     675 ..     616     689 .. 0.86

  Alignments for each domain:
  == domain 1    score: 62.1 bits;  conditional E-value: 8.3e-21
    TIGR00990  99 aavesadelpeidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalllked.P...vyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfa 243
                  ++v   ++ p   e+   ++se e ++ a klk kGn   ++k++d+a+e y++al l +  P   vy+snraa   ++  +++ + d+ +al+l p y ka  r   a+  lg y+ al   t+ +l  +  +++s+  +e+  kk a
  MMETSP1061-20121228|24282_1 337 PPV--QQQVPPAIEQVDSGFSEAEAQAEAEKLKSKGNSHMQKKHYDEALECYTQALRLSPSgPlshVYFSNRAAALLSMKMFDQAILDSERALALAPTYGKAHARLGLAHFLLGDYRRALEAYTV-ALKYEPDNKSSKSYMEKAAKKLA 482
                  333..34555555667789***************************************996334559****************************************************988887.688889999*********99998 PP

  == domain 2    score: 43.9 bits;  conditional E-value: 2.7e-15
    TIGR00990  90 ekkstapkaaavesadelpeidessvvnlseeerkkyaaklkekGnkayrnkdfdkaielyskalllked.P...vyysnraacynaladlekvvedttaaleldpdyvkalnr 199
                  + + +a  +a+     e+ e+  +++++l +   +  a k k +Gn    n++++ a+e ys a++l +d P   vyysnraa    l  +e+ v+d+  a+ l+p y ka  r
  MMETSP1061-20121228|24282_1 507 NTANQANTTAPTRGKREKREPSDHQRLELPDLSTD-AAEKHKTLGNTQMANREYQAALESYSTAIELSPDgPqshVYYSNRAAALCYLERYEEAVQDSEVAIYLKPTYGKAHAR 619
                  44556667788888889999999999999876665.599******************************962666***********************************9877 PP

  == domain 3    score: 3.5 bits;  conditional E-value: 0.0047
    TIGR00990 334 lelrGifkflkgkheealadlsksieldP..rltqsyikrasinlelgdsdkaeedfdk 390
                  +   G+ +f+ g+ e++ +  + ++e dP  + ++s++ +a ++le+ + ++    fd 
  MMETSP1061-20121228|24282_1 617 HARLGLSQFFLGDLEGSINAYETALEYDPnnAANKSFLAKARLKLERKQKEQELASFDV 675
                  56678999999******************444799*************99998888875 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   1.2   6.1e-11   6.3e-08     178     298 ..     346     471 ..     320     479 .. 0.63
   2 !   27.9   2.4   1.1e-10   1.1e-07     122     243 ..     540     664 ..     533     679 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 6.1e-11
    TIGR02917 178 aralvdevLtadpknvdAllL..kgdlllssgnieeAlaayrkaielkpnaiaall...alatilleegefeeAekkadallkkapnspkaaylkAlvdfqkkkfedAretlqaalksapeylpal 298
                  a + vd   ++  ++++A  L  kg+  + ++ ++eAl+ y++a++l p  + +++   ++a +ll+ + f++A  + + +l+ ap   ka+   +l +f  +++ +A+e+ + alk +p++  ++
  MMETSP1061-20121228|24282_1 346 AIEQVDSGFSEAEAQAEAEKLksKGNSHMQKKHYDEALECYTQALRLSPSGPLSHVyfsNRAAALLSMKMFDQAILDSERALALAPTYGKAHARLGLAHFLLGDYRRALEAYTVALKYEPDNKSSK 471
                  444445555555555555555223566666666666777777777766666655542235666666667777777777777777777777766667777777777777776666666666655544 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 1.1e-10
    TIGR02917 122 eeaaellalrglAaLglgeleeAqksleqAlaiapksleakl...glAqlalaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegef 243
                   +aae + ++g+++++++e ++A +s+++A + +p+ +++ +     A  +   ++++ea +  + ++  +p   +A++ +g  ++ +g+ e   +ay+ a+e +pn++a + +la ++l++++ 
  MMETSP1061-20121228|24282_1 540 TDAAEKHKTLGNTQMANREYQAALESYSTAIELSPDGPQSHVyysNRAAALCYLERYEEAVQDSEVAIYLKPTYGKAHARLGLSQFFLGDLEGSINAYETALEYDPNNAANKSFLAKARLKLERK 664
                  578999*****************************99999873224566666677********************************************************99999999987654 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.2   3.7e-06    0.0038      59      93 ..     370     404 ..     361     432 .. 0.79
   2 !   16.7   0.4   9.3e-07   0.00095      49     133 ..     397     481 ..     395     484 .. 0.90
   3 !   12.4   0.2     2e-05     0.021      49      88 ..     431     470 ..     425     511 .. 0.84
   4 !   15.1   0.1     3e-06    0.0031      56      93 ..     547     584 ..     542     594 .. 0.87
   5 !   13.2   0.2   1.1e-05     0.011      32     103 ..     594     665 ..     585     695 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 3.7e-06
    TIGR02552  59 aaclqalkeyeeAiaaYalaaaldlddprpvyhaa 93 
                  + +++++k+y+eA+++Y+ a+ l+++ p  +++ +
  MMETSP1061-20121228|24282_1 370 GNSHMQKKHYDEALECYTQALRLSPSGPLSHVYFS 404
                  7899************************9998854 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 9.3e-07
    TIGR02552  49 pteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeaml 133
                  p ++ y+   aa+l  +k +++Ai   ++a+al +   +++ +++  +++lg++++Al+a  +a++   ++++ + + e+a++ l
  MMETSP1061-20121228|24282_1 397 PLSHVYFSNRAAALLSMKMFDQAILDSERALALAPTYGKAHARLGLAHFLLGDYRRALEAYTVALKYEPDNKSSKSYMEKAAKKL 481
                  5667788888999999*****************************************************9999999999998876 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 2e-05
    TIGR02552  49 pteakywlgLaaclqalkeyeeAiaaYalaaaldlddprp 88 
                  pt  k +++L++++  l++y +A++aY++a++ ++d+ + 
  MMETSP1061-20121228|24282_1 431 PTYGKAHARLGLAHFLLGDYRRALEAYTVALKYEPDNKSS 470
                  566678899***********************99998765 PP

  == domain 4    score: 15.1 bits;  conditional E-value: 3e-06
    TIGR02552  56 lgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaa 93 
                    L+ + +a  ey+ A++ Y+ a  l++d p+ +++ +
  MMETSP1061-20121228|24282_1 547 KTLGNTQMANREYQAALESYSTAIELSPDGPQSHVYYS 584
                  5799****************************998854 PP

  == domain 5    score: 13.2 bits;  conditional E-value: 1.1e-05
    TIGR02552  32 gkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgeke 103
                   +yeeA++  ++ ++l pt  k +++L+++   l++ e+ i+aY+ a+  d+++++    +a+  l+l++k+
  MMETSP1061-20121228|24282_1 594 ERYEEAVQDSEVAIYLKPTYGKAHARLGLSQFFLGDLEGSINAYETALEYDPNNAANKSFLAKARLKLERKQ 665
                  5899999999999999***********************************999988777777777776554 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.1     0.016        17     126     169 ..     354     397 ..     339     407 .. 0.51
   2 !   13.5   0.2     8e-06    0.0082      41     100 ..     410     469 ..     404     473 .. 0.90
   3 !   22.2   3.5   1.8e-08   1.9e-05      63     212 ..     541     695 ..     537     710 .. 0.80

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.016
    TIGR02521 126 iedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrp 169
                   ++ + + +a+ ++++g   +++++ ++a +  t+al++ p+ p
  MMETSP1061-20121228|24282_1 354 FSEAEAQAEAEKLKSKGNSHMQKKHYDEALECYTQALRLSPSGP 397
                  44444444444555555555555555555555555555555444 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 8e-06
    TIGR02521  41 YleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                   l  + +++A  + e Al+l+p + +a++ l+l+   lg+  +A e++  Al+ +p+n +
  MMETSP1061-20121228|24282_1 410 LLSMKMFDQAILDSERALALAPTYGKAHARLGLAHFLLGDYRRALEAYTVALKYEPDNKS 469
                  5666778999999*******************************************9975 PP

  == domain 3    score: 22.2 bits;  conditional E-value: 1.8e-08
    TIGR02521  63 kdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvl...NNYGtFLcqqkkyeeAeqqfeaAie.dpkYeqparsyeNaglcalkagdtekaekyltralkidpkrp..esllelaelklkkgqyaeAralleryqqtv..eqtaesLwLgiri 212
                  + a+ ++ l+   +  +e ++A es+ +A++l+p+ ++ +    N  + Lc   +yeeA q  e Ai  +p+Y++   +   +gl +  +gd e   ++ + al++dp+++  +s+l+ a+lkl+++q  +  a ++  ++     +++++++++ ++
  MMETSP1061-20121228|24282_1 541 DAAEKHKTLGNTQMANREYQAALESYSTAIELSPDGPQSHvyySNRAAALCYLERYEEAVQDSEVAIYlKPTYGK---AHARLGLSQFFLGDLEGSINAYETALEYDPNNAanKSFLAKARLKLERKQKEQELASFDVSNEARrlMADPDMMLMAKKM 695
                  66778899999999999******************99987222455789*****************862677875...56678*************************986337999999*******9999888888776654325555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (742 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 2967.75
//
Query:       MMETSP1061-20121228|24286_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   10.5   0.0       0.09    9.6   0.0    1.4  1  TIGR02036 dsdC: D-serine deaminase transcriptional activator


Domain annotation for each model (and alignments):
>> TIGR02036  dsdC: D-serine deaminase transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   2.2e-05      0.09     143     183 ..     226     266 ..     219     308 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 2.2e-05
    TIGR02036 143 idvaiyfddkqpaklsckeilsetivpvcspeyaqkyalts 183
                   d +i +dd +p+ +++ ++l et   vc+p   q+y l +
  MMETSP1061-20121228|24286_1 226 TDKSILLDDSTPQGMAYSFLLGETASFVCTPTLMQRYGLST 266
                  58899********************************9965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2940.17
//
Query:       MMETSP1061-20121228|24287_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1527.30
//
Query:       MMETSP1061-20121228|24288_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1370.66
//
Query:       MMETSP1061-20121228|24283_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1801.94
//
Query:       MMETSP1061-20121228|24290_1  [L=217]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (217 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1301.89
//
Query:       MMETSP1061-20121228|24289_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2056.83
//
Query:       MMETSP1061-20121228|24291_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 2416.42
//
Query:       MMETSP1061-20121228|24292_1  [L=1914]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1914 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.12s 00:00:00.86 Elapsed: 00:00:00.56
# Mc/sec: 4432.06
//
Query:       MMETSP1061-20121228|24294_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-07   27.8   0.0    6.1e-07   27.5   0.0    1.2  1  TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain


Domain annotation for each model (and alignments):
>> TIGR02174  CXXU_selWTH: selT/selW/selH selenoprotein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.0   1.5e-10   6.1e-07      39      70 ..      44      82 ..      13      86 .. 0.73

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 1.5e-10
    TIGR02174 39 d......stGaFEitlng.klvwsklekggfPeeeelve 70
                         +GaFEi l+g + ++sk+ +g+ P+ ++l+ 
  MMETSP1061-20121228|24294_1 44 TvlngyvVSGAFEIVLDGnQVIFSKIASGRMPNVDDLLA 82
                 355555569*********8999***********999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 400.23
//
Query:       MMETSP1061-20121228|24295_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00017   18.0   0.5      0.002   14.5   0.0    2.2  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    0.9   0.1    0.0061        25     471     489 ..     161     179 ..     156     187 .. 0.83
   2 !   14.5   0.0   4.8e-07     0.002     535     612 ..     309     389 ..     300     403 .. 0.79

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.0061
    TIGR02442 471 agalvifvvDASgSMaark 489
                   ++  i +vD SgSM++++
  MMETSP1061-20121228|24295_1 161 VSNKRIWIVDNSGSMKMMD 179
                  5677899********9875 PP

  == domain 2    score: 14.5 bits;  conditional E-value: 4.8e-07
    TIGR02442 535 akreLeelptggrtPLaag.Lkkaaevlk.nellkdkderplvvvitDGraNva.slgedpledartlaeklaaegiklvv 612
                  a++ +++ +  g++PL ++ L    +v+k +++l+++++r+++v+ tDG  N     + +p ed +++ e+l+   +++v+
  MMETSP1061-20121228|24295_1 309 AQKIMNRNQPKGQSPLHEAvLDVKRDVVKmRKQLEADGMRVTLVICTDGWVNSIsGGETTPSEDLEKMLESLKGLPVNVVI 389
                  67778888999*****9983555667776246678999**************87446666889988888888877766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.23
# Mc/sec: 3047.23
//
Query:       MMETSP1061-20121228|24293_1  [L=994]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (994 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 3279.93
//
Query:       MMETSP1061-20121228|24296_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1150.94
//
Query:       MMETSP1061-20121228|24299_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.8   0.4      0.041   11.6   0.3    1.6  1  TIGR00986 3a0801s05tom22: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR00986  3a0801s05tom22: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.3     1e-05     0.041      18      80 ..     145     208 ..     125     227 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 1e-05
    TIGR00986  18 qavveeeedaedqedvdeedssdsDfed..deeetllDrivaLkdivpptkrqkiadkystttsf 80 
                  + +v++++++e++++ d++++++ + e+  +  et+  + v+ kd+v p   +k  +k +++ + 
  MMETSP1061-20121228|24299_1 145 KWLVGDNDNDENNDNNDNDENNNGNNENnkQASETMKKKTVSNKDVVCPFC-GKTGHKTKIAKAC 208
                  668999999999999999999999988865668**************9954.4555666665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       233  (0.0568016); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 1886.34
//
Query:       MMETSP1061-20121228|24297_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.4e-165  547.1   7.7   5.1e-165  546.9   5.4    1.0  1  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II
    6.4e-31  103.9   8.3    6.6e-30  100.5   5.5    1.9  2  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
    1.1e-08   32.3   7.9    3.3e-06   24.1   0.6    2.3  2  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
     0.0073   13.2   2.7      0.062   10.1   0.1    2.2  2  TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase


Domain annotation for each model (and alignments):
>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  546.9   5.4  4.9e-168  5.1e-165       2     407 .]      46     463 ..      45     463 .. 0.96

  Alignments for each domain:
  == domain 1    score: 546.9 bits;  conditional E-value: 4.9e-168
    TIGR03150   2 rvvvtGlGlvtplgndveetwenllagksgikkitkfdasdlkvkiagevkd..fdpeeyl.dkkearrldrfiqyalaaakealedagl...eleeedaervgvivgsGiGGletieeqakklkekgpr.rvsPffipsaiinlaagqvsiklglkgpnlavvtACatgthaigeaarlikegeadvmiagGaeaaitelgiagFaalkalst.rnddpekasrPfdkdrdGFvlgeGagvlvlEelehAkaRgAkiyaevvGyglsaDAyHitapaeegegaaramkaalkdaglkpeevdyinaHgtstplgdkaEtkaikkvfgehak....klavsstKsmtGHlLGaaGaveavitvlaleeqvvpptinleepdeecdldyvpnkareakievalsnsfGFGGtnaslvlk 407
                  rvvvtGlG+++  g++ e+++++ l+gks i+++++fdas+++++ia+ev d  f+p++++ ++k++r  drf+++a+aaak+al+dagl     + e+  ++gv+vg+  GG++t+eeq+ kl ++ +r +vsPf+ip+++ n a+g + i++g +gpn+ v++ACa+g+haigea+ +i+ g++d m+agG+ea++t+l++agF+a+ka+++ +nd+p++ srPfd++r GFv+geGagv++lE+le+AkaRgAkiyae+vGyg+++DAyHit+pa+eg+g a am++al+++g+++++v+y+naHgtst ++dk+Et+aik+vfg+ha+    k +vsstK +tGH+LGaaG++eav++v++++++++pptin+e++d+ecdldyvpn +re+++++a+s ++GFGG+na++++k
  MMETSP1061-20121228|24297_1  46 RVVVTGLGVINGCGIGHEDFFNACLEGKSSIDTVKRFDASHMTCQIASEVPDdmFNPKDFFgSAKNVRSNDRFTHFAVAAAKQALRDAGLgdsPDTLENPAKIGVMVGTAFGGMQTFEEQTLKLAKNPERpKVSPFTIPALLGNTASGVIGIETGCQGPNYGVTSACASGSHAIGEALGMIRDGKCDKMLAGGTEATMTPLCFAGFCAMKAMNSkFNDNPKAGSRPFDANRGGFVMGEGAGVILLESLESAKARGAKIYAEMVGYGATCDAYHITTPAPEGRGLAAAMEMALAESGIEKTDVSYVNAHGTSTAYNDKFETMAIKSVFGDHATakdgKFVVSSTKCVTGHTLGAAGGIEAVVAVRSIKDNIIPPTINYETEDPECDLDYVPNVKREMEVKAAMSTNLGFGGHNAAVLFK 463
                  9*************************************************9666*****9845799************************86545567999********************99987755449********************************************************************************7659******************************************************************************************************************963334799****************************************************************************997 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.6   0.0    0.0041       4.2      59     129 ..      84     160 ..      75     173 .. 0.74
   2 !  100.5   5.5   6.4e-33   6.6e-30     177     422 ..     183     435 ..     179     466 .. 0.88

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.0041
    TIGR02813  59 adksyckrGGflpevdfnpmef.Glppnileltdisqllslvvakevladaklpdd....ydrdkiGitlGv..GGGq 129
                  a    c+    +p+  fnp +f G   n +   d    +++  ak+ l+da+l+d+     +  kiG+ +G   GG q
  MMETSP1061-20121228|24297_1  84 ASHMTCQIASEVPDDMFNPKDFfGSAKN-VRSNDRFTHFAVAAAKQALRDAGLGDSpdtlENPAKIGVMVGTafGGMQ 160
                  5556688888899999***997255555.56789999999*************9994443345899999996213433 PP

  == domain 2    score: 100.5 bits;  conditional E-value: 6.4e-33
    TIGR02813 177 fpGslGnvisGrianrfdlGGmncvvdaacaGslaalrlalselvegrsevmitGGvctdnspfmymsfsktpaftt....ned..iqpfdidskGmmiGeGiGmvalkrledaerdGdriyavikGvGassdGkfksiyaprpeGqakalkrayddaGfapktvGlieahGtGtaaGdvaefsGlssvfsqdndqkq.hialGsvksqiGhtkstaGtaGlikaalalhhkvlpatinvdkpnpkldiedsp 422
                   p  lGn  sG i       G n  v +aca    a+  al  + +g+ + m++GG  +  +p  +  f    a+ +    n +   +pfd +  G ++GeG G++ l  le a+  G +iya + G Ga+ d    +  ap   G a a++ a  ++G +   v  ++ahGt ta  d  e   ++svf +    k  +  + s k   Ght  +aG    + a+ +++  ++p+tin +  +p+ d++  p
  MMETSP1061-20121228|24297_1 183 IPALLGNTASGVIGIETGCQGPNYGVTSACASGSHAIGEALGMIRDGKCDKMLAGGTEATMTPLCFAGFCAMKAMNSkfndNPKagSRPFDANRGGFVMGEGAGVILLESLESAKARGAKIYAEMVGYGATCDAYHITTPAPEGRGLAAAMEMALAESGIEKTDVSYVNAHGTSTAYNDKFETMAIKSVFGDHATAKDgKFVVSSTKCVTGHTLGAAGGIEAVVAVRSIKDNIIPPTINYETEDPECDLDYVP 435
                  6999***************************999***********************************9888765422114333369**********************************************9988888888889*******************************************9987666527899**************9999999999***************99999999766 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.6   3.2e-09   3.3e-06      75     154 ..     204     284 ..     190     285 .. 0.69
   2 !   12.9   1.0   8.4e-06    0.0086     245     361 ..     283     412 ..     279     418 .. 0.79

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 3.2e-09
    TIGR01930  75 paltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsmSrvpillkaslrreslklgkakledqllkdl..vktklsmget 154
                  p + v+ +CaSg +A+  a  +i+ G++d ++aGG E  + +p+      + + ++ +++++ ++  + +  ++ ++ mge 
  MMETSP1061-20121228|24297_1 204 PNYGVTSACASGSHAIGEALGMIRDGKCDKMLAGGTEA-TMTPLCFAGFCAMKAMNSKFNDNPKAGSRPFdaNRGGFVMGEG 284
                  78899********************************8.5666655554444444443333333222222437777777776 PP

  == domain 2    score: 12.9 bits;  conditional E-value: 8.4e-06
    TIGR01930 245 DGAaalllmseevakelgltplarivsaavagvdp.....eemglgpvpAiekaLkkaglsisdidlvEinEAFAaqvlavekelgs........ldlekvNvnGGAiAlGHPlGasGarivltllkeLk 361
                  +GA+++ll s e ak+ g ++ a++v+++ +   +     +  g g + A+e aL++ g++ +d+ +v+ +    a    +e+   +         ++ k+ v      +GH lGa G++  +  ++++k
  MMETSP1061-20121228|24297_1 283 EGAGVILLESLESAKARGAKIYAEMVGYGATCDAYhittpAPEGRGLAAAMEMALAESGIEKTDVSYVNAHGTSTAYNDKFETMAIKsvfgdhatAKDGKFVVSSTKCVTGHTLGAAGGIEAVVAVRSIK 412
                  7***************************99886662222255677889*********************9988776544443332224666677544899999999999999999999998887777765 PP

>> TIGR02430  pcaF: 3-oxoadipyl-CoA thiolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.1   6.1e-05     0.062      84     119 ..     207     242 ..     195     266 .. 0.83
   2 !    3.1   0.2    0.0083       8.5     256     373 ..     282     411 ..     272     415 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 6.1e-05
    TIGR02430  84 tvnrlcgsgldalglaaraikaGeadlviaGGvesm 119
                   v   c+sg +a+g a   i+ G+ d ++aGG e+ 
  MMETSP1061-20121228|24297_1 207 GVTSACASGSHAIGEALGMIRDGKCDKMLAGGTEAT 242
                  67788****************************973 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0083
    TIGR02430 256 ndGaaalllaseeavkrhgltprarilaaasaG.....veprvmGlgpvpavkkllaraglsledldvie.......lneafaaqal.avlrelgladddarvnpnGGaialGhplGasGarlvltalkql 373
                   +Ga  +ll s e++k++g +  a ++++ ++        p+  G g + a++ +la+ g++  d+  ++        n+ f + a+ +v  +   a d++ v +       Gh lGa+G   ++ a++ +
  MMETSP1061-20121228|24297_1 282 GEGAGVILLESLESAKARGAKIYAEMVGYGATCdayhiTTPAPEGRGLAAAMEMALAESGIEKTDVSYVNahgtstaYNDKFETMAIkSVFGDHATAKDGKFVVSSTKC-VTGHTLGAAGGIEAVVAVRSI 411
                  57999999******************99876652222245777788889999999999999988888776222222257777777763456677778888888776655.569999999988887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 1988.35
//
Query:       MMETSP1061-20121228|24298_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2688.67
//
Query:       MMETSP1061-20121228|24300_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.1e-10   36.5   0.0    1.6e-09   35.7   0.0    1.4  1  TIGR01068 thioredoxin: thioredoxin
    2.2e-07   29.0   0.0    4.8e-07   27.9   0.0    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    8.8e-05   20.0   0.1    0.00015   19.3   0.1    1.3  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
     0.0027   14.2   0.0     0.0037   13.7   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
     0.0052   14.2   0.0     0.0092   13.4   0.0    1.4  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.7   0.0     2e-12   1.6e-09      11      75 ..     268     333 ..     256     342 .. 0.79

  Alignments for each domain:
  == domain 1    score: 35.7 bits;  conditional E-value: 2e-12
    TIGR01068  11 assdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvd.eeqeiaakygirsiPtlllf 75 
                  a++  lv+v f+A+WC +Ck++   ++ l +e  ++vk+v +    e+  + +  g++s+P   ++
  MMETSP1061-20121228|24300_1 268 AKDASLVVVRFYASWCKACKAIESSFHRLPQEFPSTVKFVEVPLTkENAYLHKGLGVSSLPFAHVY 333
                  334568************************************9651566678889*****976555 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   5.8e-10   4.8e-07       9      81 ..     264     336 ..     258     350 .. 0.76

  Alignments for each domain:
  == domain 1    score: 27.9 bits;  conditional E-value: 5.8e-10
    TIGR01126   9 lvld..enkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataeke.laskfkvsgfPtlkffkkg 81 
                   v+d  + + v+v+fya WC  Ck+++  +++l +e+ +   +vk  +v  t+e++ l + ++vs+ P  +++ + 
  MMETSP1061-20121228|24300_1 264 EVVDakDASLVVVRFYASWCKACKAIESSFHRLPQEFPS---TVKFVEVPLTKENAyLHKGLGVSSLPFAHVYYNA 336
                  4444114456889************************96...5899999988875516677899999987776655 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.8e-07   0.00015     364     395 ..     272     303 ..     254     340 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.8e-07
    TIGR01130 364 KdVLvefYApWCGHCkkLapiYeelaekykke 395
                    V v+fYA WC  Ck++++ +++l +++ ++
  MMETSP1061-20121228|24300_1 272 SLVVVRFYASWCKACKAIESSFHRLPQEFPST 303
                  33788999999999999999999999988775 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   4.5e-06    0.0037     371     401 ..     268     300 ..     233     333 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.5e-06
    TIGR00424 371 rkeawlvv..lyapwcpfcqameasyvelaekl 401
                   k+a lvv  +ya wc+ c+a+e+s+  l + +
  MMETSP1061-20121228|24300_1 268 AKDASLVVvrFYASWCKACKAIESSFHRLPQEF 300
                  56666666236***************9997765 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.1e-05    0.0092      55      88 ..     261     296 ..     238     325 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.1e-05
    TIGR00385  55 ltaevl..kkgklvLlnvwasWCptCraehplLkel 88 
                  +++ev+  k + lv++ ++asWC  C+a     ++l
  MMETSP1061-20121228|24300_1 261 YKEEVVdaKDASLVVVRFYASWCKACKAIESSFHRL 296
                  444444114567788999*********976665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.23
# Mc/sec: 2513.53
//
Query:       MMETSP1061-20121228|24314_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|24315_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 436.14
//
Query:       MMETSP1061-20121228|24329_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2959.60
//
Query:       MMETSP1061-20121228|24339_1  [L=800]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-23   78.6  37.7      9e-06   23.2   0.0    9.6 10  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.3e-07    0.0018      14      26 .]     386     398 ..     382     398 .. 0.84
   2 !    8.2   0.2   0.00011      0.44      16      25 ..     413     422 ..     411     423 .. 0.93
   3 !   23.2   0.0   2.2e-09     9e-06       1      25 [.     424     447 ..     424     448 .. 0.97
   4 !   10.9   0.4   1.5e-05     0.063      13      26 .]     461     474 ..     461     474 .. 0.95
   5 !   13.5   0.0   2.3e-06    0.0095      13      26 .]     486     499 ..     475     499 .. 0.86
   6 ?   -0.7   0.0     0.068   2.8e+02       1      23 [.     500     521 ..     500     524 .. 0.82
   7 !    2.7   0.4     0.006        24      12      25 ..     535     548 ..     525     549 .. 0.87
   8 !   13.6   0.2   2.3e-06    0.0092       1      26 []     550     574 ..     550     574 .. 0.81
   9 !   12.5   0.1   4.8e-06      0.02      13      25 ..     618     630 ..     618     631 .. 0.90
  10 ?   -3.5   0.5      0.49     2e+03       1       9 [.     632     640 ..     632     641 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.3e-07
    TIGR02167  14 SnfdTsnVTnMss 26 
                  S +dTs+VT+M++
  MMETSP1061-20121228|24339_1 386 SCWDTSKVTDMAG 398
                  55*********85 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00011
    TIGR02167  16 fdTsnVTnMs 25 
                  ++Ts VT+M 
  MMETSP1061-20121228|24339_1 413 WNTSGVTDMH 422
                  *********6 PP

  == domain 3    score: 23.2 bits;  conditional E-value: 2.2e-09
    TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                  MF + ss+++ D+  +dTs VT+M 
  MMETSP1061-20121228|24339_1 424 MFEYASSFNQ-DIGLWDTSRVTDMH 447
                  **********.*************5 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 1.5e-05
    TIGR02167  13 lSnfdTsnVTnMss 26 
                  +Sn+dT+ V +Mss
  MMETSP1061-20121228|24339_1 461 VSNWDTGLVRDMSS 474
                  8***********96 PP

  == domain 5    score: 13.5 bits;  conditional E-value: 2.3e-06
    TIGR02167  13 lSnfdTsnVTnMss 26 
                  +  ++Ts+VT++s+
  MMETSP1061-20121228|24339_1 486 IGAWNTSSVTDLSY 499
                  677********997 PP

  == domain 6    score: -0.7 bits;  conditional E-value: 0.068
    TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTn 23 
                  MF+   s++  ++  +d+s V +
  MMETSP1061-20121228|24339_1 500 MFFAARSFNK-PIGYWDVSGVKD 521
                  9999999999.9999*9997755 PP

  == domain 7    score: 2.7 bits;  conditional E-value: 0.006
    TIGR02167  12 DlSnfdTsnVTnMs 25 
                  DlS + Ts+V n  
  MMETSP1061-20121228|24339_1 535 DLSEWTTSSVSNTQ 548
                  9*********9975 PP

  == domain 8    score: 13.6 bits;  conditional E-value: 2.3e-06
    TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMss 26 
                  +F++  s+++ +l  +d+s+VTnM+s
  MMETSP1061-20121228|24339_1 550 TFRNAYSFNQ-PLVEWDVSSVTNMAS 574
                  5777777777.7778*********85 PP

  == domain 9    score: 12.5 bits;  conditional E-value: 4.8e-06
    TIGR02167  13 lSnfdTsnVTnMs 25 
                  + ++d s+VTnM+
  MMETSP1061-20121228|24339_1 618 VPSWDLSSVTNMK 630
                  579*********8 PP

  == domain 10    score: -3.5 bits;  conditional E-value: 0.49
    TIGR02167   1 MFsgCssLt 9  
                  MFs  +s++
  MMETSP1061-20121228|24339_1 632 MFSMATSFN 640
                  9**999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (800 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 3199.74
//
Query:       MMETSP1061-20121228|24360_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 279.82
//
Query:       MMETSP1061-20121228|24372_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|24378_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   13.7   0.0     0.0073   13.5   0.0    1.1  1  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
  ------ inclusion threshold ------
      0.015   12.0   0.0      0.021   11.5   0.0    1.3  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
      0.034   11.0   0.0      0.039   10.9   0.0    1.1  1  TIGR00991 3a0901s02IAP34: GTP-binding protein
      0.039   10.9   0.0      0.044   10.7   0.0    1.1  1  TIGR00750 lao: LAO/AO transport system ATPase


Domain annotation for each model (and alignments):
>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   7.1e-06    0.0073     112     140 ..      59      87 ..      42      89 .] 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 7.1e-06
    TIGR03596 112 kglkkkairalvvGiPNvGKStliNrlak 140
                     + ++ir++v+G+  vGKSt+   +++
  MMETSP1061-20121228|24378_1  59 ESTEVNRIRLMVLGFGGVGKSTFCDAVTQ 87 
                  4566789***************9887766 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.51   5.2e+02      72      83 ..       2      13 ..       1      17 [. 0.83
   2 ?   11.5   0.0   2.1e-05     0.021      18      63 ..      40      88 ..      24      89 .] 0.87

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.51
    TIGR02928 72 dvrvstvyvnCq 83
                 d++++t++++Cq
  MMETSP1061-20121228|24378_1  2 DNNLETISIDCQ 13
                 678999999998 PP

  == domain 2    score: 11.5 bits;  conditional E-value: 2.1e-05
    TIGR02928 18 vhRdeqieelakalkpilrgsrpsn...vliyGktGtGKtavtkkvlke 63
                  +R  +ie l+++lk +l++s+  n   +++ G  G+GK++  ++v++e
  MMETSP1061-20121228|24378_1 40 LGRKADIEGLKAYLKMLLSESTEVNrirLMVLGFGGVGKSTFCDAVTQE 88
                 58999**************88877654479************9999875 PP

>> TIGR00991  3a0901s02IAP34: GTP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.8e-05     0.039      33      62 ..      60      89 .]      44      89 .] 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.8e-05
    TIGR00991 33 eedvssltilvmgkggvgksstvnsiiger 62
                   +v+ + ++v+g ggvgks+  +++  e+
  MMETSP1061-20121228|24378_1 60 STEVNRIRLMVLGFGGVGKSTFCDAVTQEK 89
                 45799***************9999887775 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   4.3e-05     0.044      24      57 ..      53      88 ..      43      89 .] 0.75

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 4.3e-05
    TIGR00750 24 lkrilpktGrahv..vGltGvPGaGkstlvekliee 57
                 lk +l+++ + ++  + + G+ G+Gkst+ +++++e
  MMETSP1061-20121228|24378_1 53 LKMLLSESTEVNRirLMVLGFGGVGKSTFCDAVTQE 88
                 6666666665555015678*************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 510.74
//
Query:       MMETSP1061-20121228|24379_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 477.67
//
Query:       MMETSP1061-20121228|24380_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   13.9   0.2     0.0054   13.9   0.2    1.0  1  TIGR00900 2A0121: H+ Antiporter protein
  ------ inclusion threshold ------
      0.013   12.3   0.2      0.013   12.3   0.1    1.0  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
       0.02   12.9   0.1      0.024   12.6   0.1    1.1  1  TIGR02185 Trep_Strep: conserved hypothetical integral membrane protein TIGR02185
      0.026   10.9   0.1      0.024   11.0   0.1    1.1  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family


Domain annotation for each model (and alignments):
>> TIGR00900  2A0121: H+ Antiporter protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.2   5.3e-06    0.0054     231     271 ..       5      49 ..       1      66 [. 0.74

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.3e-06
    TIGR00900 231 vllpyvtskvlrrssvevgvvlaafglGallGalllg....llgk 271
                  v+   ++s+ l+  s+++gvvl   ++G + G+l+      l ++
  MMETSP1061-20121228|24380_1   5 VVSTTYMSEFLEMDSLQIGVVLLIVMIGGMPGSLIGNyfcrLYQN 49 
                  4556677888************************99854434444 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   1.3e-05     0.013      43      96 ..      11      65 ..       2      68 .] 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.3e-05
    TIGR00895 43 lskewgldkvelGfllsagLiGmvlGallfgplaDrig.Rkrvllvsillfsvft 96
                 +s+ +++d+ ++G++l + +iG + G+l++ +++  +   ++   +++++f++ t
  MMETSP1061-20121228|24380_1 11 MSEFLEMDSLQIGVVLLIVMIGGMPGSLIGNYFCRLYQnPVKSARLGLIVFTLNT 65
                 4555689**************************9777644556666667776655 PP

>> TIGR02185  Trep_Strep: conserved hypothetical integral membrane protein TIGR02185
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.1   2.4e-05     0.024     145     181 ..       8      43 ..       3      49 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.4e-05
    TIGR02185 145 aeyidevikyvsailaviilvltavagiaGvlIgkkl 181
                    y+ e+++++s +++v+ l+++++ g+ G+lIg+++
  MMETSP1061-20121228|24380_1   8 TTYMSEFLEMDSLQIGVV-LLIVMIGGMPGSLIGNYF 43 
                  579999999887776665.56679**********986 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   2.3e-05     0.024      96     127 ..      17      48 ..       2      66 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 2.3e-05
    TIGR00879  96 asssqwglvvsillvGgligalfagylsdrfg 127
                  + s+q+g+v+ i+++Gg+ g+l++ y+ + + 
  MMETSP1061-20121228|24380_1  17 MDSLQIGVVLLIVMIGGMPGSLIGNYFCRLYQ 48 
                  789**********************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|24403_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 608.30
//
Query:       MMETSP1061-20121228|24407_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1061-20121228|24413_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-05   20.6   0.0    5.8e-05   20.4   0.0    1.0  1  TIGR01499 folC: bifunctional protein FolC


Domain annotation for each model (and alignments):
>> TIGR01499  folC: bifunctional protein FolC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.4e-08   5.8e-05     319     398 ..      21     115 ..       8     117 .. 0.57

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.4e-08
    TIGR01499 319 daaallkalkelvkkevlvtevespraesaadlekaaesqg.e......eelvsswrealeea........kekaeeeekvlVtGSlylvgevlk 398
                  +aaa++++++e++   +   + + + a++a+++ +aa++++ e        +    re+l++          ++ +  ++v+VtGSlylvg +l 
  MMETSP1061-20121228|24413_1  21 NAAATVRTWQETLAGVWRHLTEDDECASAAESESAAAAASHsEssssnaIVCNRTAREVLDDLlsatpesgGDDSSPTTQVFVTGSLYLVGSFLA 115
                  566666666666665343344444444444444444444442234444433333444444444555665443388999*************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 823.61
//
Query:       MMETSP1061-20121228|24420_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.30
# Mc/sec: 281.58
//
Query:       MMETSP1061-20121228|24415_1  [L=1104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-05   19.1   0.1    0.00017   18.2   0.0    1.4  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
  ------ inclusion threshold ------
      0.011   13.2   0.1       0.44    7.9   0.0    2.4  2  TIGR02458 CbtA: cobalt transporter subunit CbtA (proposed)


Domain annotation for each model (and alignments):
>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   8.1e-08   0.00017     120     189 ..       4      82 ..       2      88 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 8.1e-08
    TIGR00990 120 eeerkkyaaklkekGnkayrnkdfdkaielyskall....lkedPv.....yysnraacynaladlekvvedttaalel 189
                  ++e ++ a  +k kGn a+++ d d ai+ ys+ l+    +   P+       snraacy   ++l++  ed t +l++
  MMETSP1061-20121228|24415_1   4 NQELQESAEDFKTKGNYAFQKSDVDTAINAYSQGLVqvdrMTAVPIllkaaLLSNRAACYLKQGKLQECREDCTSSLAV 82 
                  6677889999**********************998622222334652222257*********************99975 PP

>> TIGR02458  CbtA: cobalt transporter subunit CbtA (proposed)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.0   0.00022      0.44      19      63 ..     727     771 ..     710     818 .. 0.69
   2 ?    2.6   0.0    0.0089        18      10     101 ..     870     973 ..     861     978 .. 0.66

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00022
    TIGR02458  19 vvallqllltvPliLkaetyekaealaassheaaeaavavaaaaa 63 
                  +++ +ql++++Pl L+ e +e +e + ++ +e    +   ++++ 
  MMETSP1061-20121228|24415_1 727 IASIFQLMAVTPLTLRKESFEGKEITMEQYDEIQRMQKTHEEKEI 771
                  78899******************9666665555544433333333 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.0089
    TIGR02458  10 llaGllaglvvallqllltvPliLkaetyekae............alaassheaaeaavavaa..aaaeeeawapadGfeRlaltvvanlvtgvGfalllaavlsl 101
                  ll+ +  gl+ ++  +  ++Pl+      e+++                s  ++++ ++a +   +a +  ++ + + ++R a+  + n+v+   f  +l  v +l
  MMETSP1061-20121228|24415_1 870 LLVTINPGLLTSAQSMGSIKPLLQLVKEIESSDlqkfeallsltnL--VSMSDTTKNKLASERglHAVKYAMFSDHPLVQRAATECLCNMVGNEDFMKVLRDVEEL 973
                  5556666666666666777777766666676666777776666431..22222233333332211455789*********************99999999888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.40u 0.21s 00:00:00.61 Elapsed: 00:00:00.74
# Mc/sec: 1969.13
//
Query:       MMETSP1061-20121228|24430_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 555.74
//
Query:       MMETSP1061-20121228|24433_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.23
# Mc/sec: 2708.65
//
Query:       MMETSP1061-20121228|24442_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|24459_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1061-20121228|24462_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.18s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1726.42
//
Query:       MMETSP1061-20121228|24508_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 521.67
//
Query:       MMETSP1061-20121228|24502_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00026   18.5   2.1       0.18    9.1   0.7    3.4  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.7   4.5e-05      0.18      10      95 ..      86     183 ..      83     194 .. 0.69
   2 !    4.1   0.1    0.0016       6.4     132     166 ..     252     286 ..     212     301 .. 0.76
   3 !    5.3   0.0   0.00067       2.8     111     167 ..     267     329 ..     251     348 .. 0.65

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 4.5e-05
    TIGR02521  10 tgCvtte..evkesskkkdrekaakirvqLaleYleqgdlekAkenlekAlel..........dpkdadanlalAlyyqqlgelekAeesfrkAltlk 95 
                  +gC+ ++   v++++++  +++++ i ++ ++++++++++e A ++ +  l++           p  a+a +  + +y ++ ++++A e+f++++++ 
  MMETSP1061-20121228|24502_1  86 SGCSAQTqkTVNTAATSVTAKATSLILLEEGIKFYNNEQFEDALNSFQAVLKSpsfsrakvgdHPLVAKALATAGCVYLRQDRHQHAVEAFENSMQMM 183
                  68988776677788888888888889999999999999999999998777665222222111123344444555578999999999999999999875 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0016
    TIGR02521 132 eqparsyeNaglcalkagdtekaekyltralkidp 166
                  ++ a++y N+g ++  +++   a ++l++al+ ++
  MMETSP1061-20121228|24502_1 252 TEVAKAYYNIGRISVVEKEYSIALNTLNEALRTEK 286
                  56789999999999999999999999999998776 PP

  == domain 3    score: 5.3 bits;  conditional E-value: 0.00067
    TIGR02521 111 qqkkyeeAeqqfeaAiedpk..Yeqpa....rsyeNaglcalkagdtekaekyltralkidpk 167
                   +k+y  A + +++A++++k  Y++++    ++++ +g++  + g ++ a  ++t+al++  +
  MMETSP1061-20121228|24502_1 267 VEKEYSIALNTLNEALRTEKevYGKQSmesfDTLTLIGFVHFSTGSFDDAVLAFTEALAVATS 329
                  456777777777777766655566654333356677777777778888888778777776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.43
# Mc/sec: 1565.45
//
Query:       MMETSP1061-20121228|24510_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.44
# Mc/sec: 716.94
//
Query:       MMETSP1061-20121228|24525_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 477.67
//
Query:       MMETSP1061-20121228|24511_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-23   78.4   0.0    1.5e-22   77.7   0.0    1.3  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    6.2e-19   66.0   0.0    8.3e-19   65.6   0.0    1.1  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    1.1e-18   65.1   0.0    1.7e-18   64.5   0.0    1.2  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    3.9e-17   59.7   0.0    5.2e-17   59.3   0.0    1.1  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
    6.1e-17   59.2   0.0    8.3e-17   58.7   0.0    1.1  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
    4.8e-16   56.3   0.0    5.9e-16   56.0   0.0    1.1  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    1.6e-15   54.6   0.0    2.6e-15   54.0   0.0    1.2  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    1.9e-14   51.0   0.0    2.3e-14   50.7   0.0    1.1  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    2.1e-14   51.0   0.0    8.1e-14   49.1   0.0    1.7  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    6.3e-13   46.0   0.0    1.3e-12   44.9   0.0    1.4  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    1.5e-11   41.4   0.0    2.1e-11   40.9   0.0    1.1  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    2.3e-06   24.0   0.0    3.3e-06   23.4   0.0    1.2  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
     0.0061   12.7   0.0     0.0089   12.1   0.0    1.2  1  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN


Domain annotation for each model (and alignments):
>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   4.7e-25   1.5e-22     125     442 ..     109     441 ..      86     460 .. 0.77

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 4.7e-25
    TIGR01238 125 Gktlsnaiaevreavdflryyakq.vedvldeesaka.............lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvad..rvltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkak.akkva..qvkledd......vese.kgtfvap.tlfelddldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsri 442
                   k+  +a  ev+ + dfl+ +a++ v+   + + +                G+v  i+p+nfpl i + q+  al  Gn  + kp+eq s++  + + ll + G+ ++ + +l  rG  v   l  ++ ++   ftGs+ va+l+ +a   +     + i ++G    ++       + v     + a++s Gq+csa  + ++ e+  +  ++l+ ++G     ++      +  vGpv+   + q++l h +k+ +  + +v      le +       ++e  + fv+   +++ ++++    e f p   +  y+ d ld v++ ++   + lt    s  
  MMETSP1061-20121228|24511_1 109 PKSHGQAYGEVKVTADFLNNFAGDnVRRLAKSFGVTGdhygqmsvghrwpYGPVALITPFNFPLEIPVLQLMGALFMGNKPVLKPSEQVSFVMEQFLRLLIDCGMDPSDVDFLNCRGV-VAQELIVETPVRLTQFTGSSRVAELLLNATNGK-----VKIEDAGFDWKILGPDVGDVDYVAWQCDQDAYASIGQKCSAQSICFIHENWKNttNLLDQMRGRAAARRL-----DNFTVGPVLTVTT-QQILDHTQKLAGLpGAEVLwgGKELEGHripdiyGAVEpTAVFVPLeEMVKEENFESCVTELFAPFQVITYYNDDTLDVVLEALEGMSHHLTAACVSND 441
                  5666788999********99887615444445555558899999999999*******************************************************************9.************************987654322.....345566655555555666778888999999*******************986511456777775554444.....4567*****8866.66999****98752222221112222222222332333133344421345668999999**************************99999998776654 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   0.0   2.6e-21   8.3e-19      69     335 ..     108     370 ..      95     445 .. 0.82

  Alignments for each domain:
  == domain 1    score: 65.6 bits;  conditional E-value: 2.6e-21
    TIGR01780  69 nGkplkeakgevlyaasyleWfaeeakrvyGdv..iaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsastvkkvslelGGnaPlivfdda.dldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgGdkreek 335
                    k+  +a gev+ +a +l+ fa +  r   +   +++ +  +  +  + P G++a+itP+nfP  +   +   al  G   v+kP+eq  ++  ++ rl  + G+    ++ + + +     +l  +  vr   ftGs+ v  +ll+ +  +v    +e  G    i+ +d+ d+d    +     + ++gq c      ++he+ ++  +++l ++++       ld+  tvGp++  ++ + +++  + a   Ga+v+ gG++ e +
  MMETSP1061-20121228|24511_1 108 VPKSHGQAYGEVKVTADFLNNFAGDNVRRLAKSfgVTGDHYGQMSVGHRWPYGPVALITPFNFPLEIPVLQLMGALFMGNKPVLKPSEQVSFVMEQFLRLLIDCGMDPSDVDFLNCRGVVAQ-ELIVETPVRLTQFTGSSRVAELLLNATNGKV---KIEDAGFDWKILGPDVgDVDYVAWQCDQDAYASIGQKCSAQSICFIHENWKN--TTNLLDQMRGRAAARRLDN-FTVGPVLTVTTQQILDHTQKLAGLPGAEVLWGGKELEGH 370
                  568899*****************9887766665235668888999999**********************************************************99999*****987655.55555558****************9877755...589999999999988659**99999999********************9876..5789999*99999999997.689****998877777777778899********776543 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.0   5.5e-21   1.7e-18     111     407 ..     100     384 ..      78     447 .. 0.77

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 5.5e-21
    TIGR01237 111 lsallvlevGkiyaeadaevaeaidfleyya.remiklaks.kevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlri.yedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaeg.klvlggedddskGyfikptifkdvdrkar 407
                  ++  +++ v k++ +a  ev  + dfl+ +a +++ +laks +++ +  G+       p G    i+p+nfpl i v   + ++  Gn  vlkp+e+ + +  ++  +l+++G+ +  ++f+  +G +  e +v+ + +rl  ftGs  v   + +++  kv+         i + G    ++  +  d++  +    + a+   Gqkcsa s   ++e+  +    +++++ + +  ++  + +  vgpv+  ++++ + +  +l+   g +++ gg  ++ +G+ i p i++ v++ a 
  MMETSP1061-20121228|24511_1 100 FTQCIIKCVPKSHGQAYGEVKVTADFLNNFAgDNVRRLAKSfGVTGDHYGQMSVGHRWPYGPVALITPFNFPLEIPVLQLMGALFMGNKPVLKPSEQVSFVMEQFLRLLIDCGMDPSDVDFLNCRGVVAQELIVE-TPVRLTQFTGSSRVAELLlNATNGKVK---------IEDAGFDWKILGPDVGDVDYVAWQCDQDAYASIGQKCSAQSICFIHENWKNT--TNLLDQMRGRAAARRLD-NFTVGPVLTVTTQQILDHTQKLAGLPGaEVLWGG--KELEGHRI-PDIYGAVEPTAV 384
                  4567888999*****************9998456778996636777889999999999***999**************************************************************877666666.569*******98886544044444443.........5666666678888899******************************997654..57889999998888888.8999999998888777766666655441566663..45566555.666666666653 PP

>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.3   0.0   1.7e-19   5.2e-17      98     428 ..     120     456 ..     108     473 .. 0.80

  Alignments for each domain:
  == domain 1    score: 59.3 bits;  conditional E-value: 1.7e-19
    TIGR01804  98 ddiadvleffaGladk.leGeiielgip..sfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkimaaaaeelkkvtlelGGksPlivfdd.adlelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGf.fiePt.vfadvtd.....dmtivreeifGPvlsvlefese..eevikrandteyGlaagvftadleraervaerlkaGt 428
                  + +ad l+ faG   + l  ++  +g    +++  +r p G v+ i+++n+Pl i + +   al +Gn  vlkPse   +   +  +ll + G+    ++ ++ + + v +el ++  v +  +tG+ +    +++a+  +   v +e  G + +i+  d  d++  + q  + ++ s Gq cs+ +  +++++ k++   +l+++++   +   +d+ t +GP+++++ ++ + +  + +   ga+++ GGk +e + + +    +ePt vf   ++     +      e+f P   +  ++++  + v++  +   + l+a+ +++d     ++ ++   Gt
  MMETSP1061-20121228|24511_1 120 KVTADFLNNFAGDNVRrLAKSFGVTGDHygQMSVGHRWPYGPVALITPFNFPLEIPVLQLMGALFMGNKPVLKPSEQVSFVMEQFLRLLIDCGMDPSDVDFLNCR-GVVAQELIVETPVRLTQFTGSSRVAELLLNATNGK---VKIEDAGFDWKILGPDvGDVDYVAWQCDQDAYASIGQKCSAQSICFIHENWKNT--TNLLDQMRGRAAARRLDNFT-VGPVLTVTTQQILDHTQKLAGLPGAEVLWGGKELEGHRIPDIYgAVEPTaVFVPLEEmvkeeNFESCVTELFAPFQVITYYNDDtlDVVLEALEGMSHHLTAACVSNDAAFQSKILAHTVNGT 456
                  5667777777774333133332222221236788899*********************************************************99999999999.579999***************99998888777765...5699********987736********************************9985..57788887777778888766.9******998888888888999****************987432589984666554411111445566799***9999999877323455666778899*********998888877766666 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.7   0.0   2.6e-19   8.3e-17     111     419 ..     132     442 ..     105     468 .. 0.75

  Alignments for each domain:
  == domain 1    score: 58.7 bits;  conditional E-value: 2.6e-19
    TIGR02299 111 dkaeeakdgetlpvdeflnytv..rvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrngadtlkrlslelGGksPvivfdd.adleraldavvfmifslnGerctassrllvqesiae..dfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPt.vlvd.....adnkmriaqeeifGPvltvipfkdee..ealelandieyGlagyvwtedv 419
                  d++++  +   +  d++ +++v  r p G+v+litP+n P+ +   ++  al +Gn  vlkp+e   +   ++ +l+ + g+ +  +++++  G  a + +ve p v++  f+G++   + ++++   t  ++++e  G +  i+  d  d++          ++  G++c+a+s  +++e+ ++  +++++++ r+ a      ld+ t vGP++  +  + +    ++a   Ga++l Ggk++++ +  ++     v+Pt v+v      ++++      e+f P+ ++  ++d++   +le  + +++ l++   ++d 
  MMETSP1061-20121228|24511_1 132 DNVRRLAKSFGVTGDHYGQMSVghRWPYGPVALITPFNFPLEIPVLQLMGALFMGNKPVLKPSEQVSFVMEQFLRLLIDCGMDPSDVDFLNCRGVVAQELIVETP-VRLTQFTGSSRVAELLLNA---TNGKVKIEDAGFDWKILGPDvGDVDYVAWQCDQDAYASIGQKCSAQSICFIHENWKNttNLLDQMRGRAAA----RRLDNFT-VGPVLTVTTQQILDHTQKLAGLPGAEVLWGGKELEGHRIPDI--YGAVEPTaVFVPleemvKEENFESCVTELFAPFQVITYYNDDTldVVLEALEGMSHHLTAACVSNDA 442
                  44444444444455555554443388***********************************************************************99888876.9***********9999887...55678899999888887766269998888888889******************976511455666666555....5677765.9****9999888889999****************99333332..223555523333001112334556678999**99999999886323556666677777666666655 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.0   0.0   1.9e-18   5.9e-16     132     350 ..     154     368 ..      93     455 .. 0.76

  Alignments for each domain:
  == domain 1    score: 56.0 bits;  conditional E-value: 1.9e-18
    TIGR01722 132 sirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhGdkeavdrllehpdvkavsfvGsvavgeyiyetgsahgkrvqalaGaknhmvvlpda.dkeaaldalvgaavGaaGqrcmaisaavlvGaa...kelveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgyk 350
                    r p G va itpfnfp  ip+  +  a+  Gn  vlkpse+v     +  +ll ++G+    ++ +    +  ++l+    v+   f Gs++v+e + + +   + +v+      +  ++ pd  d + ++ +    a+ + Gq+c a s++ +  +     +l++++r ra+  r++        +Gp++t  +++ + +  + +   Gaevl  G+ ++
  MMETSP1061-20121228|24511_1 154 GHRWPYGPVALITPFNFPLEIPVLQLMGALFMGNKPVLKPSEQVSFVMEQFLRLLIDCGMDPSDVDFLNCRGVVAQELIVETPVRLTQFTGSSRVAELLLNAT---NGKVKIEDAGFDWKILGPDVgDVDYVAWQCDQDAYASIGQKCSAQSICFIHENWkntTNLLDQMRGRAAARRLDNF-----TVGPVLTVTTQQILDHTQKLAGLPGAEVLWGGKELE 368
                  3589********************************************************99999999998888888888888**************998754...3445555556678899999648999999******************998876541125677777777776666554.....689**9999998888888889999999999887653 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   8.1e-18   2.6e-15     126     418 ..     151     450 ..     100     460 .. 0.77

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 8.1e-18
    TIGR03240 126 avlrhr.phGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGaretGkalaaeedidGllftGssntGallhrqlagrpekilalelGGnnplvveevkdidaavhlivqsafisaGqrctcarrllvkdg.aeGdallerlvevaerltvgkydaepqpflGavisekaakellaaqekllalggksll......elkqleeeaalltpgiidvtevaevpde........eyfgpllkvlrykd..fdealaeanntrfGlaaGllsddrelydkfll 418
                    + hr p+G +a++ p+nfp  +p   ++ al+ Gn  v+kpse    v e+ ++l+ + G+    +++++      + l+ e+ +    ftGss+  +ll +   g+   +   + G +  ++  +v d+d ++ +  q a+ s Gq+c+     +++++ ++   ll+++   a++ +++++       +G+v++   ++++l+  +kl+ l+g+++l      e +++    + ++p+ + v   +e+  e        e+f+p+  ++ y+d  +d  l++ +   + l+a  +s+d++  +k+l 
  MMETSP1061-20121228|24511_1 151 MSVGHRwPYGPVALITPFNFPLEIPVLQLMGALFMGNKPVLKPSEQVSFVMEQFLRLLIDCGMDPSDVDFLNCRGVVAQELIVETPVRLTQFTGSSRVAELLLNATNGK---VKIEDAGFDWKILGPDVGDVDYVAWQCDQDAYASIGQKCSAQSICFIHENwKNTTNLLDQMRGRAAARRLDNFT------VGPVLTVT-TQQILDHTQKLAGLPGAEVLwggkelEGHRIPDIYGAVEPTAVFVPL-EEMVKEenfescvtELFAPFQVITYYNDdtLDVVLEALEGMSHHLTAACVSNDAAFQSKILA 450
                  44556559********************************************************999*****9999*************************98887776...444566777788889*************************9999999887245567888887777777777775......67777665.45688888888888777766222211222233334556666554432.22222211112222667887777777644477788888888888888888888776666555 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   0.0   7.4e-17   2.3e-14     141     431 ..     160     462 ..      90     474 .. 0.76

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 7.4e-17
    TIGR03250 141 gvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiGkliaakagykravlelGGndplivled.adldraadlavkGsyknsGqrctavkrilvqesvadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarlllgnkrdGalyaptvldrvdpel......alvreetfGpvs.....p..virfkdidda...irisnstayglssgvctnrldaitkliaelevGtvnvwev 431
                  g ++ itpfn pl+  + +++ a+   n+ vlkpse+v +    ++ ll ++G+ +  ++ +      +a+eli++  v l  ftG+  +  l+ + ++ k + +e  G d  i+  d  d+d  a    + +y   Gq+c+a    +++e   +  t  l+++ r       ld+   +G v+   + + +++  + a   Ga++l g k       p +   v+p+       ++v+ee f   +     p  vi++ + d     ++  ++ ++ l+++  +n+ +  +k++a+   Gt    +v
  MMETSP1061-20121228|24511_1 160 GPVALITPFNFPLEIPVLQLMGALFMGNKPVLKPSEQVSFVMEQFLRLLIDCGMDPSDVDFLNCRG-VVAQELIVETPVRLTQFTGSSRVAELLLNATNGK-VKIEDAGFDWKILGPDvGDVDYVAWQCDQDAYASIGQKCSAQSICFIHENWKN--TTNLLDQMRGRAAARRLDNF-TVGPVLTVTTQQILDHTQKLAGLPGAEVLWGGKELEGHRIPDIYGAVEPTAvfvpleEMVKEENFESCVtelfaPfqVITYYNDDTLdvvLEALEGMSHHLTAACVSNDAAFQSKILAHTVNGTTTRADV 462
                  67899*******************************************************998765.69**********************9998776665.556777888877777759******************************98754..55567888888888899975.59999999999999999999999*****998877666667777777776642222225666666643221111112244444333222113444566666666666666666666666666666555555 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.1   0.0   2.6e-16   8.1e-14      87     356 ..     106     371 ..      90     457 .. 0.72

  Alignments for each domain:
  == domain 1    score: 49.1 bits;  conditional E-value: 2.6e-16
    TIGR03374  87 ncgkplhavlndeipaivdvfrffaga.arclsgl.aageyleghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakdi.lpagvvnvlfgrgktvgdaltghekvrmvsltgsiatgehilahtaasikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriyaqrgi..ydelveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggekvkgkg 356
                  +c    h     e+   +d +  fag   r l+ +        g+ s+  r p g va i+p+n+pl +   +l  al  gn  vlkpse+  +   ++ +l+ d  + +  v+ l  rg  v + l     vr+  +tgs    e +l+ t   +k      g    ++  d  d+d v+       +   gq c+a    ++        +l++++          a + ++  +gp+ +++  +++ +  ++   l+  +v+ gg++ +g+ 
  MMETSP1061-20121228|24511_1 106 KCVPKSHGQAYGEVKVTADFLNNFAGDnVRRLAKSfGVTGDHYGQMSVGHRWPYGPVALITPFNFPLEIPVLQLMGALFMGNKPVLKPSEQVSFVMEQFLRLLIDCgMDPSDVDFLNCRGV-VAQELIVETPVRLTQFTGSSRVAELLLNATNGKVKIEDA--GFDWKILGPDVGDVDYVAWQCDQDAYASIGQKCSAQSICFIHENWknTTNLLDQMRGRA-----AARRLDNFTVGPVLTVTT-QQILDHTQKLAGLPGAEVLWGGKELEGHR 371
                  466667888889999**********96256665431333445699************************************************99998888888864889999******96.7888999999*********************99997644..445567788999**********************9765555544300333444432222.....223334445777777654.45666666677777777777777777764 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   4.3e-15   1.3e-12     171     457 ..     159     442 ..     149     452 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 4.3e-15
    TIGR01236 171 eGfvaaisPfnftaiaanlagaPal.mGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhps.adveevvaatirgafeyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeeleilaGGkyddskG....y.fvePtvv......eskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdr 457
                   G va i+Pfnf      l    al mGn  v kPs+ + +     +++l + G+ p+ ++f+ + gv+ ++ ++  + +   +ftGs +v + l +  + ++           e  G d+ +  p   dv+ v+    + a+   Gqkcsa s  ++    wk+ ++ l + + +     +d++++  g+v+  ++ ++i +  +k    p   e+l GGk  + +     y  vePt v        k+ + ++ ++e+f P   +  y+dd  + +le ++  s + lt a +++d 
  MMETSP1061-20121228|24511_1 159 YGPVALITPFNFPLEIPVLQLMGALfMGNKPVLKPSEQVSFVMEQFLRLLIDCGMDPSDVDFLNCRGVVAQELIVETP-VRLTQFTGSSRVAELLLNATNGKV---------KIEDAGFDWKILGPDvGDVDYVAWQCDQDAYASIGQKCSAQSICFIH-ENWKNTTNLLDQMRGRAAARRLDNFTV--GPVLTVTT-QQILDHTQKLAGLP-GAEVLWGGKELEGHRipdiYgAVEPTAVfvpleeMVKEENFESCVTELFAPFQVITYYNDDTLDVVLEALEGMS-HHLTAACVSNDA 442
                  578999******766666666666549***************************************999888776554.55679******9998887766655.........458889999888775279***************************95.579999999999999999999999985..77776654.44555555555556.789999999655443122133599*987344322245666677889**********************998655.679999999986 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.9   0.0   6.7e-14   2.1e-11     107     421 ..     120     441 ..     110     466 .. 0.72

  Alignments for each domain:
  == domain 1    score: 40.9 bits;  conditional E-value: 6.7e-14
    TIGR03216 107 rvfadvvknvateafem......atpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvkevslelGGknaaivfada.dldaavegvlrsaflntGqvclgtervyverpifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqpt.iwtglpd.....s.arvvkeeifGpvchvapfdse..eeviarandtayGlaasvwted 421
                  +v ad ++n a +  +        t d  ++++  +r p G v++i+p+n+pl +   ++  al +Gn  v+kpse+       +  ++ ++G+ +   + ++  G   a e++++ p v    ftG +r  e +++a+      v +e  G +  i+  d+ d+d +   + + a++  Gq c +    +++    ++  + l + ++     + + ++ ++Gp+++ + ++ +    kla   Ga+v+ GG   e     +    v+pt +++ l++     + +++v+ e+f p   ++ ++ +  + v++  +  ++ l+a+  ++d
  MMETSP1061-20121228|24511_1 120 KVTADFLNNFAGDNVRRlaksfgVTGDHYGQMSVGHRWPYGPVALITPFNFPLEIPVLQLMGALFMGNKPVLKPSEQVSFVMEQFLRLLIDCGMDPSDVDFLNCRGV-VAQELIVETP-VRLTQFTGSSRVAELLLNATNGK---VKIEDAGFDWKILGPDVgDVDYVAWQCDQDAYASIGQKCSAQSICFIHENW-KNTTNLLDQ-MRGR-AAARRLDNFTVGPVLTVTTQQILDHTQKLAGLPGAEVLWGGKELEGHRIPDIYGAVEPTaVFVPLEEmvkeeNfESCVT-ELFAPFQVITYYNDDtlDVVLEALEGMSHHLTAACVSND 441
                  5556666555555443211111135677789999*********************************************99999999*******99999***99997.5788888776.89999*********999987655...66899999999999996599999999**************99999998764.444444443.3333.33344457899****99888766667788999******99964333333333333666534454443110002134444.578887777776443114555556666666666665555 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   1.1e-08   3.3e-06     149     434 ..     163     450 ..     126     478 .. 0.71

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 1.1e-08
    TIGR02278 149 vqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivGsv..gdlldhldsrdvvaftGsaataeklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalve..avlealkarlakvklGdPreedvklGplvsveqredveaavaallaagaevrlgdpeeld............GaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGs..lvaslvtadpevarqfil 434
                    i  fnfP    + +l  a++ G   ++kP+   ++v e +++l+++ g+ P     l + +v  ++l+ +   r    ftGs   ae l    n      + ++e   ++  +lG+dv     ++d  + +  ++  a  Gqkc+a    ++ ++  +  ++l+ ++ r a       r ++ ++Gp+ +v  ++ ++++ +     gaev +g++e +              a f P   +++e +      te f P   +  y+d +  v l a+ + s  l a+ v++d +   ++++
  MMETSP1061-20121228|24511_1 163 ALITPFNFPLEIPVLQLMGALFMGNKPVLKPSEQVSFVMEQFLRLLIDCGMDPSDVDFLNCRGVvaQELIVETPVR-LTQFTGSSRVAELLLNATN-----GKVKIEDAGFDWKILGPDVG----DVDYVAWQCDQDAYASIGQKCSAQSICFIHENWKNttNLLDQMRGRAA-----ARRLDNFTVGPVLTVTTQQILDHTQKLAGLPGAEVLWGGKELEGhripdiygavepTAVFVPLEEMVKEENF-ESCVTELFAPFQVITYYNDDTLDVVLEALEGMShhLTAACVSNDAAFQSKILA 450
                  45899****98777777777777777788************************99888888554124555555444.679*********9976555.....467789999*********99....7889999999*************9999988776551134444444444.....4577999****9887766544444333344799******987778999999444444444444333333322.334699****9999999988877777666554434788888888776555444 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.8e-05    0.0089     217     313 ..     182     271 ..     160     315 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.8e-05
    TIGR02288 217 slatGnavlvkphpgailplaltvkvarevlaeaGfdpnlvalaaeeaeeevaqrlaldpavrivdftGsnafGewleqnarqaqvytekaGvntvi 313
                  +l  Gn  ++kp ++     ++ ++   ++l + G+dp+ v +   +    vaq+l ++  vr+ +ftGs+   e l  na + +v  e aG +  i
  MMETSP1061-20121228|24511_1 182 ALFMGNKPVLKPSEQV----SFVMEQFLRLLIDCGMDPSDVDFLNCR--GVVAQELIVETPVRLTQFTGSSRVAELL-LNATNGKVKIEDAGFDWKI 271
                  5566666666665543....33333344578999****999987665..78**********************9977.589999*******987555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.46
# Mc/sec: 1535.09
//
Query:       MMETSP1061-20121228|24527_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|24519_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.1e-28   96.0   0.0    1.2e-15   54.9   0.0    2.1  2  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    1.1e-14   52.0   0.0      7e-08   29.5   0.0    2.7  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    1.2e-11   41.8   0.0    4.5e-06   23.5   0.0    2.7  2  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    5.3e-09   33.3   0.1     0.0076   13.1   0.0    3.1  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    1.2e-06   26.3   0.0    2.7e-06   25.1   0.0    1.5  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    1.3e-05   22.2   0.0     0.0069   13.2   0.0    3.0  3  TIGR02023 BchP-ChlP: geranylgeranyl reductase
    3.9e-05   20.2   0.0    5.4e-05   19.8   0.0    1.1  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
     0.0018   15.4   0.0     0.0028   14.7   0.0    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0097   12.4   0.2      0.022   11.3   0.0    1.6  2  TIGR02734 crtI_fam: phytoene desaturase
  ------ inclusion threshold ------
       0.03   11.1   0.0      0.047   10.5   0.0    1.3  1  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
      0.031   11.6   0.0      0.096   10.1   0.0    1.7  2  TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC
      0.037   11.0   0.1      0.085    9.8   0.0    1.5  1  TIGR00507 aroE: shikimate 5-dehydrogenase
      0.039   10.9   0.0       0.46    7.4   0.0    2.4  3  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.041   10.0   0.0      0.064    9.4   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2


Domain annotation for each model (and alignments):
>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.9   0.0     4e-18   1.2e-15       1     184 [.      62     253 ..      62     261 .. 0.80
   2 !   38.9   0.0   2.9e-13   8.6e-11     262     371 ..     314     426 ..     305     435 .. 0.81

  Alignments for each domain:
  == domain 1    score: 54.9 bits;  conditional E-value: 4e-18
    TIGR03219   1 lrvaiiGGGiaGvalalelsksshlnvklfeaapafgevGaGvsfGanavraieglG......laeaykkvadrtsapwqdiwfewrrgsdasylgatiapgvGqs.svhradfldallkklpegiakfgkkaksiee..qaeevevsfedGteyradlligadGiksalrdyvlega.gqaaveprfsGtsay 184
                  l+v i G G+ G+ala  lsk++ ++v + e + +f   G  + + +na++ + ++       + ++++   d+ +   + i  ew    d  + + + a ++  +  + r d+ d  lk+lp+g  + g+ +++++   ++ +v+ ++e G++ + d+ligadGi sa+r+++  +  + ++    +sG + +
  MMETSP1061-20121228|24519_1  62 LKVMIAGAGVGGLALAKTLSKNPNMEVVVLERTDEFKRFGGPIQLASNALKILDEMDtdvyneIMKKFTFTGDKENGIKDGIRTEWYAKFD--LASPAKARNMPYTgVIERPDLQDIYLKNLPKGTVQNGDGLVTYTTdsKTGRVTAELESGATVTGDVLIGADGIWSAVRSKMHGTPaKGDESGATYSGYTVF 253
                  6899************************************************998852222225566666778888888889999988776..44555555555441689********************999887651156789999************************9876641345555666666555 PP

  == domain 2    score: 38.9 bits;  conditional E-value: 2.9e-13
    TIGR03219 262 mldafagwgdaarvllelieaptlwa..lhdlae..lpgyvhGrvaliGdaahamlphqGaGaGqGledayllarlledtkleaedlpellevyddvrrerackvqrtsveaGe 371
                  + d f gw+  ++++l++ ++  +    l+d ++  l  + +  val+Gd  ham+p  G G  q +ed++++a+ l+ +k+ +e +++ le y   r+ r++ vq  s+ a +
  MMETSP1061-20121228|24519_1 314 LQDLFVGWSSEIHAILTVTKENEIEQrdLYDRPPsiLKPWTKDHVALLGDGIHAMMPNLGQGGCQAIEDSFVIAQELGSAKTRNE-VTQKLESYARRRQIRSAAVQGLSRFASD 426
                  5677999999999999999888775411444332224456799***********************************9998765.6666899*************99987766 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   2.4e-10     7e-08       2     171 ..      64     233 ..      63     241 .. 0.78
   2 !   19.1   0.0   3.6e-07    0.0001     276     346 ..     354     421 ..     334     436 .. 0.89

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 2.4e-10
    TIGR01988   2 ivIvGgGlvGlalAlaLassadlkvalveakaaekakspafdnRvsAlsaasiellekig..vwdklekkraqpi..qkirvsdagskg...alefdaaevgaeaLgy..vvenkvlqqaLlealqekknkvtllapaeveeleresdaveltlsdgetleakLlvgADGanSkvrqaa 171
                  ++I+G+G+ GlalA +L+++++++v ++e++++ k          + l++++ ++l++++  v ++++k + +    ++  + d+ +++   + ++++  ++a ++ y  v+e  +lq+  l++l + +  v+        ++ ++  +v+ +l++g+t++ ++l+gADG  S+vr+++
  MMETSP1061-20121228|24519_1  64 VMIAGAGVGGLALAKTLSKNPNMEVVVLERTDEFKRFG-----GPIQLASNALKILDEMDtdVYNEIMK-KFTFTgdKENGIKDGIRTEwyaKFDLASP-AKARNMPYtgVIERPDLQDIYLKNLPKGT--VQNGDGLVTYTTDSKTGRVTAELESGATVTGDVLIGADGIWSAVRSKM 233
                  89****************************98765333.....35889999999999886558888888.44443113344666655446443333333.345555554489************99985..8888888888899999*****************************987 PP

  == domain 2    score: 19.1 bits;  conditional E-value: 3.6e-07
    TIGR01988 276 vaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaallaat 346
                   +++val+Gd  h + P  GQG    ++D   +a+ l  a++r+      + L+ Y+r+r+   aa++++ 
  MMETSP1061-20121228|24519_1 354 TKDHVALLGDGIHAMMPNLGQGGCQAIEDSFVIAQELGSAKTRN---EVTQKLESYARRRQIRSAAVQGLS 421
                  6899***********************************99997...44589*********9999888765 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.0   1.5e-08   4.5e-06       1     169 [.      63     234 ..      63     241 .. 0.81
   2 !   15.0   0.0   5.9e-06    0.0017     259     342 ..     339     422 ..     330     433 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1.5e-08
    TIGR01984   1 dviivGgglvGlslAlaLsrksklkialieaksaeaakssfdarslalsagskqileklg......iweklekeatpikdihv.sdrgafgalelra..eevalpaLGyVveladlkqallkrlaekkkiklyapaelkeierekdeaevkldneqkleakLlvaAdGanskvresls 169
                  +v+i G+g+ Gl+lA +Ls++ ++++ ++e ++  +        ++ l+  + +il +++      i++k+  +  + + i+   +++   + +l +  +  ++p    V+e  dl+ ++lk+l +  +++  +     + ++++++++ +l+++ ++++++l+ AdG  s+vr++++
  MMETSP1061-20121228|24519_1  63 KVMIAGAGVGGLALAKTLSKNPNMEVVVLERTDEFKR----FGGPIQLASNALKILDEMDtdvyneIMKKFTFTGDKENGIKDgIRTEWYAKFDLASpaKARNMPYT-GVIERPDLQDIYLKNLPKG-TVQNGDGLVTYTTDSKTGRVTAELESGATVTGDVLIGADGIWSAVRSKMH 234
                  589***************************9987666....456899************999988889998888888777764134455666666541033444444.49************99888.7888877777777777778888889999******************9976 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 5.9e-06
    TIGR01984 259 erkaypLklviaeeqvkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylkerkeDraatigltd 342
                  +r +y    +i +   k++v+l+g+  + + P  gQG  + + D + +a+ l +a++    ++ l+ y+++r+   aa+ gl++
  MMETSP1061-20121228|24519_1 339 QRDLYDRPPSILKPWTKDHVALLGDGIHAMMPNLGQGGCQAIEDSFVIAQELGSAKTRNEVTQKLESYARRRQIRSAAVQGLSR 422
                  555565566666777899*************************************988888999********998877777665 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3   0.0     0.003      0.87       3      30 ..      64      88 ..      62     106 .. 0.83
   2 !   13.1   0.0   2.6e-05    0.0076     153     190 ..     197     234 ..     166     283 .. 0.78
   3 !   10.4   0.0   0.00016     0.047     331     396 ..     354     416 ..     350     423 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.003
    TIGR01989  3 vvivGgGlvGlalAaalkknpslkdkkv 30
                 v+i+G+G+ GlalA +l+knp+++   v
  MMETSP1061-20121228|24519_1 64 VMIAGAGVGGLALAKTLSKNPNME---V 88
                 89******************9874...4 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 2.6e-05
    TIGR01989 153 pndnsnlvkikledgetlktklliGADGanSkvRkaan 190
                   ++++ +v+ +le g t + ++liGADG  S vR ++ 
  MMETSP1061-20121228|24519_1 197 TDSKTGRVTAELESGATVTGDVLIGADGIWSAVRSKMH 234
                  4667788999************************8764 PP

  == domain 3    score: 10.4 bits;  conditional E-value: 0.00016
    TIGR01989 331 vtervALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLkkyererkakNva 396
                   ++ vAL+GD  H + P  GqG    ++D  ++++ l++a ++      +++L++y r r+ +  a
  MMETSP1061-20121228|24519_1 354 TKDHVALLGDGIHAMMPNLGQGGCQAIEDSFVIAQELGSAKTRNE---VTQKLESYARRRQIRSAA 416
                  5789*********************************99977654...357788888888776665 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   9.1e-09   2.7e-06       3     168 ..      64     247 ..      63     279 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 9.1e-09
    TIGR02032   3 vvvvGaGpaGssaAlrlakk.GlrVlllekkelprekeCggals..kraveelelpkelivnevrkariispngek.veieee.................eeealvidRkefDelLaekAqeagaelllettvlsveiedekvkvevredekkevtakivigAdGakskvakklg.lkkekrelaval 168
                  v + GaG  G ++A +l+k+  ++V++le++++   k  gg ++   +a++ l++++ ++ ne+ k+ ++++ +e   +  ++                  +++ vi+R ++ +  +++  +  ++   +  +++ + + ++++v+++ ++  +vt++++igAdG  s+v++k+   +++ +e + ++
  MMETSP1061-20121228|24519_1  64 VMIAGAGVGGLALAKTLSKNpNMEVVVLERTDE--FKRFGGPIQlaSNALKILDEMDTDVYNEIMKKFTFTGDKENgIKDGIRtewyakfdlaspakarnMPYTGVIERPDLQDIYLKNLPKGTVQ--NGDGLVTYTTDSKTGRVTAELESGATVTGDVLIGADGIWSAVRSKMHgTPAKGDESGATY 247
                  78**************9876379*******954..566777665116678888999988888888777777766665555444567788888888888878999********88777777666444..4444444445555666666666789*******************9985545555555544 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   2.4e-05    0.0069       2      46 ..      63     107 ..      62     130 .. 0.88
   2 ?    4.4   0.0     0.012       3.4     136     162 ..     208     234 ..     150     278 .. 0.74
   3 ?    0.6   0.0      0.16        47     254     316 ..     346     409 ..     327     417 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.4e-05
    TIGR02023   2 dvlviGggpsGaaaaetLaka.gievillerelarikPCGGaiPla 46 
                  +v++ G+g++G a a+tL k+ ++ev++ler  ++ k  GG i la
  MMETSP1061-20121228|24519_1  63 KVMIAGAGVGGLALAKTLSKNpNMEVVVLERT-DEFKRFGGPIQLA 107
                  79****************986489********.********99765 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.012
    TIGR02023 136 geekksveadvviGaDGakskvakelg 162
                   e+  +v+ dv iGaDG  s v +++ 
  MMETSP1061-20121228|24519_1 208 LESGATVTGDVLIGADGIWSAVRSKMH 234
                  234467999***********9985554 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.16
    TIGR02023 254 PlkPrkrldservvLvGDaaGlvakasGeGiyyamksGklaaeaivea.lksgdatdLrkyekk 316
                  P   +k +++++v+L GD    + +  G G   a++   + a+ +  a  ++   ++L++y ++
  MMETSP1061-20121228|24519_1 346 PPSILKPWTKDHVALLGDGIHAMMPNLGQGGCQAIEDSFVIAQELGSAkTRNEVTQKLESYARR 409
                  55557889**********************9999998888888876540444466778877765 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.8e-07   5.4e-05       4      45 ..      63     106 ..      60     146 .. 0.85

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.8e-07
    TIGR00562   4 kvvvvGgGisGLciayalekerpdvelvlvEakd...RvGGkiyT 45 
                  kv + G+G+ GL++a +l+k+ p++e+v++E  d   R GG i+ 
  MMETSP1061-20121228|24519_1  63 KVMIAGAGVGGLALAKTLSKN-PNMEVVVLERTDefkRFGGPIQL 106
                  799*****************9.*********98766699**9984 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   9.6e-06    0.0028      10      53 ..      50      94 ..      46     126 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 9.6e-06
    TIGR00292 10 eayfedlldyaesDviivGaGpsGLtaayylakeg.lkvvvlerk 53
                 e+ +e++ +     v+i+GaG  GL+ a+ l+k+  + vvvler 
  MMETSP1061-20121228|24519_1 50 ETFVEEISEQNPLKVMIAGAGVGGLALAKTLSKNPnMEVVVLERT 94
                 67778888888899********************88*******96 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   7.4e-05     0.022       2      32 ..      65      96 ..      64     106 .. 0.85
   2 ?   -2.4   0.0         1     3e+02     214     269 ..     374     430 ..     373     437 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.4e-05
    TIGR02734  2 vViGaGlgGLAlAirLaaa.Gievtvlekrdk 32
                 ++ GaG+gGLAlA  L ++  +ev vle+ d+
  MMETSP1061-20121228|24519_1 65 MIAGAGVGGLALAKTLSKNpNMEVVVLERTDE 96
                 678*************9873699******997 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1
    TIGR02734 214 rGGtsalvealaklaedlggelrlnaeveeieteg..erataveledgerleadavvs 269
                  +GG++a+ ++ + + ++lg   + n+  +++e+     +++ +  +  +r++ d+++ 
  MMETSP1061-20121228|24519_1 374 QGGCQAIEDSFVIA-QELGSAKTRNEVTQKLESYArrRQIRSAAVQGLSRFASDIIIR 430
                  69999999998754.4444444444444444443322344555555567888887775 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00016     0.047       3      33 ..      64      94 ..      62     118 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00016
    TIGR03970  3 vlvvGaGsaGsvlaarLsedpsatvtvleaG 33
                 v++ GaG  G  la+ Ls++p ++v+vle  
  MMETSP1061-20121228|24519_1 64 VMIAGAGVGGLALAKTLSKNPNMEVVVLERT 94
                 89**************************975 PP

>> TIGR02964  xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00033     0.096      98     136 ..      59      97 ..      36     131 .. 0.71
   2 ?   -2.0   0.0       1.6   4.6e+02      82     132 ..     392     444 ..     368     459 .. 0.70

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00033
    TIGR02964  98 aaaaevvlfGaGHvgkalvrvlaklpvrvtlvdsreeel 136
                  ++  +v++ GaG  g al+++l+k p    +v +r +e+
  MMETSP1061-20121228|24519_1  59 QNPLKVMIAGAGVGGLALAKTLSKNPNMEVVVLERTDEF 97 
                  55678*********************5555555666777 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 1.6
    TIGR02964  82 daeeadtleeevkaea..aaaaevvlfGaGHvgkalvrvlaklpvrvtlvdsr 132
                  +a+++++++++ ++ a  ++ ++ ++ G    +++++     +p +v++vd +
  MMETSP1061-20121228|24519_1 392 SAKTRNEVTQKLESYArrRQIRSAAVQGLSRFASDIIIRGFDTPAKVSWVDGK 444
                  55566666666655543356667778888888888877777889999999976 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.0   0.00029     0.085     115     151 ..      59      96 ..      48     118 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00029
    TIGR00507 115 ksekrvliiGAGGaakavaleLlka.dkeviiaNRtve 151
                  ++ ++v+i GAG  + a+a +L+k+ + ev+++ Rt e
  MMETSP1061-20121228|24519_1  59 QNPLKVMIAGAGVGGLALAKTLSKNpNMEVVVLERTDE 96 
                  23567********************899********65 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.0    0.0016      0.46       2      32 ..      64      95 ..      63     101 .. 0.89
   2 ?   -0.3   0.0      0.33        97      52     146 ..     139     233 ..     130     238 .. 0.80
   3 ?   -1.5   0.0      0.77   2.3e+02     288     324 ..     383     417 ..     353     424 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0016
    TIGR01790  2 liviGgGlAglaiAlela.kpglrvqlieaap 32
                 +++ G+G  gla+A  l+ +p+++v+++e ++
  MMETSP1061-20121228|24519_1 64 VMIAGAGVGGLALAKTLSkNPNMEVVVLERTD 95
                 6799**************99********9655 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.33
    TIGR01790  52 ladlvehrWsdayeyrfdeearklkraYg.svdraqlkeellqkleea.vlwleakaikveadavslslvecaggqriqarlVidargfkalvqyek 146
                  ++d + ++W        +  a+  + +Y   ++r +l++  l++l+++ v+  ++ +   + ++  + + e + g ++   + i a g  ++v  + 
  MMETSP1061-20121228|24519_1 139 IKDGIRTEWYAKFDLASP--AKARNMPYTgVIERPDLQDIYLKNLPKGtVQNGDGLVTYTTDSKTGRVTAELESGATVTGDVLIGADGIWSAVRSKM 233
                  666677788877777777..555667885167999*************888888889999999899999999*************999988776655 PP

  == domain 3    score: -1.5 bits;  conditional E-value: 0.77
    TIGR01790 288 Apklaaaiaqalalsselataawkslwreerrrqryf 324
                     +a+ +    a +++++t+ ++s++r+++ r   +
  MMETSP1061-20121228|24519_1 383 SFVIAQEL--GSAKTRNEVTQKLESYARRRQIRSAAV 417
                  33333333..333344666666666666666655544 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.0   0.00022     0.064     378     424 ..      60     110 ..      39     129 .. 0.76

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00022
    TIGR03997 378 rrkkvlvvGgGPaGleaaataarr.Ghrvtlleree...elGGqvklaakl 424
                  ++ kv+++G+G +Gl+ a+t ++    +v++ler +   + GG ++la+++
  MMETSP1061-20121228|24519_1  60 NPLKVMIAGAGVGGLALAKTLSKNpNMEVVVLERTDefkRFGGPIQLASNA 110
                  3479****************98872579******97222579*99999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        49  (0.0119454); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.38
# Mc/sec: 1875.63
//
Query:       MMETSP1061-20121228|24538_1  [L=957]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (957 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.32
# Mc/sec: 3947.30
//
Query:       MMETSP1061-20121228|24561_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1839.85
//
Query:       MMETSP1061-20121228|24608_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-05   18.8   0.0    6.8e-05   18.7   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
  ------ inclusion threshold ------
      0.012   12.9   0.0      0.012   12.9   0.0    1.1  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   3.3e-08   6.8e-05      57     113 ..      11      69 ..       5      74 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 3.3e-08
    TIGR03903  57 vFeyveGrtlrevLaadGa...LpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvs 113
                  vF y +   lr+vL+  G    L+ +   +   q L al +  ++ ++h DLkP+ni+v+
  MMETSP1061-20121228|24608_1  11 VFPYLP-YNLRDVLQKFGKgvgLALGAVRNYFGQLLSALGHLERHRILHADLKPDNILVA 69 
                  677766.46999999866422466677777899*************************98 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   5.8e-06     0.012      94     126 ..      39      71 ..      10      77 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 5.8e-06
    TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiivkdd 126
                  +++ ++  ++g+l +++i+h Dl + Ni+v +d
  MMETSP1061-20121228|24608_1  39 NYFGQLLSALGHLERHRILHADLKPDNILVAGD 71 
                  566677788999******************766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|24614_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|24619_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 2086.44
//
Query:       MMETSP1061-20121228|24637_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 381.30
//
Query:       MMETSP1061-20121228|24640_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 496.53
//
Query:       MMETSP1061-20121228|24638_1  [L=602]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-14   51.4   3.2    5.1e-08   30.2   0.0    3.2  3  TIGR01969 minD_arch: cell division ATPase MinD
    1.2e-13   49.2   0.0    3.5e-13   47.7   0.0    1.8  1  TIGR02945 SUF_assoc: FeS assembly SUF system protein
    2.5e-11   41.5   0.1    5.1e-11   40.5   0.0    1.4  1  TIGR03406 FeS_long_SufT: probable FeS assembly SUF system protein SufT
    3.9e-10   37.3   0.7    1.2e-07   29.2   0.1    3.1  3  TIGR01968 minD_bact: septum site-determining protein MinD
    2.1e-07   28.5   0.3    1.4e-06   25.9   0.2    2.1  1  TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ
    8.5e-07   26.5   0.0    0.00026   18.4   0.0    2.4  2  TIGR01007 eps_fam: capsular exopolysaccharide family
    4.3e-06   24.0   0.1    0.00038   17.7   0.0    2.4  2  TIGR01287 nifH: nitrogenase iron protein
    2.2e-05   21.7   0.1    5.4e-05   20.4   0.0    1.6  2  TIGR03018 pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase
    3.3e-05   21.2   0.1    6.8e-05   20.2   0.1    1.5  1  TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
     0.0038   14.2   0.3     0.0078   13.2   0.2    1.4  1  TIGR03815 CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
     0.0066   13.1   2.1      0.033   10.8   0.0    2.1  2  TIGR03453 partition_RepA: plasmid partitioning protein RepA
     0.0087   13.4   0.0      0.019   12.3   0.0    1.5  2  TIGR02410 carnitine_TMLD: trimethyllysine dioxygenase
     0.0091   13.4   1.4        1.3    6.3   0.0    2.5  2  TIGR00345 arsA: arsenite-activated ATPase ArsA
  ------ inclusion threshold ------
      0.025   11.7   0.1      0.098    9.7   0.0    1.9  2  TIGR02016 BchX: chlorophyllide reductase iron protein subunit X


Domain annotation for each model (and alignments):
>> TIGR01969  minD_arch: cell division ATPase MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   1.7e-10   5.1e-08       2      40 ..     182     220 ..     181     239 .. 0.88
   2 !   11.3   0.1   0.00011     0.031     107     179 ..     284     358 ..     265     404 .. 0.78
   3 !    9.3   0.1   0.00041      0.12     201     243 ..     434     476 ..     384     484 .. 0.83

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 1.7e-10
    TIGR01969   2 vitiasGkGGtGkttvtanlgvaLaklGkkvlvlDaDia 40 
                  +++++s kGG+Gk t++ nl+ aL  lG++v + D D+ 
  MMETSP1061-20121228|24638_1 182 IVAVSSCKGGVGKSTTSVNLAYALQSLGANVGIFDCDVY 220
                  799**********************************96 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00011
    TIGR01969 107 ddvdflliDaPaGlerd..avtalaaadelllvvnPeissitDalkvkivaeklgtkilGvvlnrvtkektelsk 179
                  ++ d+l++D P G +    ++t+ +  + +++v++P   s +D ++  ++ + +++  + vv n   +++   s+
  MMETSP1061-20121228|24638_1 284 GSLDYLILDMPPGTGDIqlTLTQRLNITAAVIVTTPQELSFADVVRGVEMFDTVNVPCVAVVENMAYYDSDPASQ 358
                  578********997643113445555678999****************************999988777665554 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.00041
    TIGR01969 201 rraaakgepvvvkkpespaakalvelaaelagieyevkekkke 243
                        g+p v ++p+s+ ++ ++ela++++   +++k  +k 
  MMETSP1061-20121228|24638_1 434 AANGDSGTPYVLENPDSAQTQIYKELAKSVVSEVAKAKYSSKR 476
                  44556799*********************99977777666554 PP

>> TIGR02945  SUF_assoc: FeS assembly SUF system protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   1.2e-15   3.5e-13       3      85 ..      86     169 ..      84     180 .. 0.90

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 1.2e-15
    TIGR02945   3 keeviealkevydPeiPvniyelGliyeveved.dkkvkiemtltaPncPvagelPeeveeavkeveGveevevelvfdPpwsk 85 
                  + +++++l  v dP++  +i+ lG++ ++++++ ++kv+ ++ lt+P+cPv +++ +  e+ v+e++ v++v+v+++ + p ++
  MMETSP1061-20121228|24638_1  86 QGQILKTLTAVIDPDLGQDIVTLGFVQNLKMDEsERKVSFDVELTTPACPVKETFRSDCERLVSELPFVDSVDVTMTAQEPSNT 169
                  6789***************************997899***************************************97655443 PP

>> TIGR03406  FeS_long_SufT: probable FeS assembly SUF system protein SufT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.5   0.0   1.7e-13   5.1e-11      70     161 ..      81     169 ..      66     178 .. 0.86

  Alignments for each domain:
  == domain 1    score: 40.5 bits;  conditional E-value: 1.7e-13
    TIGR03406  70 eeeekeeavweqlrtvydPeiPvnivdLGLvyevkvekleegkkkveiemtLtaPgCGmGevlvedvkkkveavpevkevevelvfdPPWsr 161
                    +e + ++ ++l +v dP++  +iv LG+v ++k+++    ++kv+ ++ Lt P+C + e + +d ++ v+++p v++v+v +    P + 
  MMETSP1061-20121228|24638_1  81 IPNEWQGQILKTLTAVIDPDLGQDIVTLGFVQNLKMDE---SERKVSFDVELTTPACPVKETFRSDCERLVSELPFVDSVDVTMTAQEPSNT 169
                  445567799*************************9988...5678**************************************988777665 PP

>> TIGR01968  minD_bact: septum site-determining protein MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.1   4.1e-10   1.2e-07       2      40 ..     181     219 ..     180     235 .. 0.93
   2 ?    3.6   0.0     0.026       7.7     111     160 ..     285     336 ..     252     374 .. 0.76
   3 ?    1.1   0.0      0.15        44     186     239 ..     412     466 ..     376     485 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 4.1e-10
    TIGR01968   2 kvivvtsGkGGvGkttttanlgtalaklgkkvvlvdadi 40 
                   ++ v s kGGvGk+tt+ nl+ al +lg  v + d d+
  MMETSP1061-20121228|24638_1 181 AIVAVSSCKGGVGKSTTSVNLAYALQSLGANVGIFDCDV 219
                  5899**********************************8 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.026
    TIGR01968 111 efdyvlidsPaGiekGfk..navasadeaivvttPevsavrdadrviGllea 160
                  + dy+++d P G        +   +   a++vttP+  +  d  r + ++++
  MMETSP1061-20121228|24638_1 285 SLDYLILDMPPGTGDIQLtlTQRLNITAAVIVTTPQELSFADVVRGVEMFDT 336
                  479*******99654332002334567899*****98888887776666665 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.15
    TIGR01968 186 vedvkeilsikligvipedeevivatnkGePvvlekk.seagkafeniarrllGe 239
                   + + ++ +i+    +p  +++    + G P vle+  s +++ ++++a+ +  e
  MMETSP1061-20121228|24638_1 412 KQRLSDQWGIEHTYSMPLMDRIAANGDSGTPYVLENPdSAQTQIYKELAKSVVSE 466
                  555666777777777888889999999******99876999999****9988765 PP

>> TIGR03371  cellulose_yhjQ: cellulose synthase operon protein YhjQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.2   4.7e-09   1.4e-06       3     194 ..     182     375 ..     180     379 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 4.7e-09
    TIGR03371   3 viaivsvkGGvGkTtltAnLasalklsgeevlaidldpqnlLrlhfgldlserdGlarallageaWaaaalrssdgvrfvpyGslsadeaeayleadaewlarllqqldleardvvlidlprgasel...arqaLaaadlvlvvvnadaasyallqqqalelle.....rsaerkkarf...linqfdparqlsrDvrallrk 194
                  ++a+ s kGGvGk+t + nLa al+++g +v + d+d     + ++   ++ +d + r+++     +++a  + +gvr++ +G ++   a  +    +++l++ l+  +    d  ++d+p+g  ++     q L+    ++ v +++  s+a + + ++ +         + ++ a++     +q + + +l++Dvr +l++
  MMETSP1061-20121228|24638_1 182 IVAVSSCKGGVGKSTTSVNLAYALQSLGANVGIFDCDVY---GPSLPTMVEPDDDIVRFVD-----RQIAPLQRNGVRLMSFGYINDGSAIMRGPMVSQLLDQFLSVTQWGSLDYLILDMPPGTGDIqltLTQRLNITA-AVIVTTPQELSFADVVRGVEMFDTvnvpcVAVVENMAYYdsdPASQVNNKAELEDDVRSMLAE 375
                  79**********************************865...5677777788888888888.....6777888899999999998887777778888889998888888877799999999954444111455555544.445667777788888877775555777763333444555333467788888888888888765 PP

>> TIGR01007  eps_fam: capsular exopolysaccharide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   8.7e-07   0.00026      19      62 ..     182     225 ..     169     239 .. 0.88
   2 !    5.6   0.0    0.0074       2.2     127     195 ..     285     354 ..     251     361 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 8.7e-07
    TIGR01007  19 vllitsvkageGkstvsaniavafaqaGyktLliDgDlrksvls 62 
                  +++++s k g Gkst+s+n+a+a+ + G  + + D D+  + l 
  MMETSP1061-20121228|24638_1 182 IVAVSSCKGGVGKSTTSVNLAYALQSLGANVGIFDCDVYGPSLP 225
                  579**********************************9877665 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0074
    TIGR01007 127 yfDyiiiDtpPigvviDaaiiar.avdasiLvveaekikkrevkkakeqleqagskiLGvvlnkvdvsvd 195
                    Dy+i+D+pP +  i   + +r ++ a+++v++ ++    +v + +e ++ ++  ++ vv n    + d
  MMETSP1061-20121228|24638_1 285 SLDYLILDMPPGTGDIQLTLTQRlNITAAVIVTTPQELSFADVVRGVEMFDTVNVPCVAVVENMAYYDSD 354
                  57*********9888888777764799*******************************999887666555 PP

>> TIGR01287  nifH: nitrogenase iron protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   1.3e-06   0.00038       7      39 ..     188     220 ..     182     239 .. 0.88
   2 ?    3.9   0.0     0.021       6.1     227     249 ..     446     468 ..     416     491 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1.3e-06
    TIGR01287   7 GkGGiGksttvqniaaalaeagkkvlvvGcdPk 39 
                   kGG+Gkstt+ n+a al++ g +v ++ cd  
  MMETSP1061-20121228|24638_1 188 CKGGVGKSTTSVNLAYALQSLGANVGIFDCDVY 220
                  59****************************965 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.021
    TIGR01287 227 ydpeseqakeyrelakkivenee 249
                   +p+s q++ y+elak++v++  
  MMETSP1061-20121228|24638_1 446 ENPDSAQTQIYKELAKSVVSEVA 468
                  479**************987654 PP

>> TIGR03018  pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   1.8e-07   5.4e-05      33      85 ..     178     229 ..     167     246 .. 0.87
   2 ?   -3.6   0.0       4.1   1.2e+03     152     197 ..     289     335 ..     271     345 .. 0.60

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 1.8e-07
    TIGR03018  33 knknlimvtsalsgeGksftaiNLAislaleldktvLliDadlrrPslselLg 85 
                      +++v+s   g Gks t++NLA +l + l  +v + D+d+  Psl ++++
  MMETSP1061-20121228|24638_1 178 GIGAIVAVSSCKGGVGKSTTSVNLAYAL-QSLGANVGIFDCDVYGPSLPTMVE 229
                  5567899********************9.679999************998865 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 4.1
    TIGR03018 152 iiiDtppllvtsearvlae.lvdqivlVveeertteeavkealsale 197
                  +i+D pp     + +  ++ ++   v+V   ++ + ++v   +++ +
  MMETSP1061-20121228|24638_1 289 LILDMPPGTGDIQLTLTQRlNITAAVIVTTPQELSFADVVRGVEMFD 335
                  56666665444333332221345556666666666666666666655 PP

>> TIGR01281  DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.1   2.3e-07   6.8e-05       7      38 ..     188     219 ..     181     230 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 2.3e-07
    TIGR01281   7 GkGGiGksttssnlsvalakkGkkvlqiGcdp 38 
                   kGG+Gkstts nl+ al   G++v    cd 
  MMETSP1061-20121228|24638_1 188 CKGGVGKSTTSVNLAYALQSLGANVGIFDCDV 219
                  69***********************9999996 PP

>> TIGR03815  CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.2   2.7e-05    0.0078     110     155 ..     179     224 ..     168     233 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 2.7e-05
    TIGR03815 110 rgvvvaVvggrGGaGAStlAaalAlaaarsglrtlLvDadPlggGl 155
                   g++vaV + +GG G St ++ lA a ++ g+ + + D+d  g  l
  MMETSP1061-20121228|24638_1 179 IGAIVAVSSCKGGVGKSTTSVNLAYALQSLGANVGIFDCDVYGPSL 224
                  5899************************************988755 PP

>> TIGR03453  partition_RepA: plasmid partitioning protein RepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00011     0.033     106     142 ..     182     218 ..     172     230 .. 0.86
   2 ?    1.3   0.4     0.091        27     235     280 ..     286     333 ..     269     350 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00011
    TIGR03453 106 viavvnfkGGsgktttaahLaqylalrGyrvLavDlD 142
                  ++av   kGG gk tt++ La  l   G  v   D D
  MMETSP1061-20121228|24638_1 182 IVAVSSCKGGVGKSTTSVNLAYALQSLGANVGIFDCD 218
                  89*******************9998888777666666 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.091
    TIGR03453 235 yDvvviDcpPqlg..fltlsallaatavlitvhpqmlDvasmsqfLem 280
                   D +++D pP  g   ltl+  l  ta +i   pq l  a + + +em
  MMETSP1061-20121228|24638_1 286 LDYLILDMPPGTGdiQLTLTQRLNITAAVIVTTPQELSFADVVRGVEM 333
                  6899*******9955689999888888888888998877776666665 PP

>> TIGR02410  carnitine_TMLD: trimethyllysine dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.0       5.4   1.6e+03      56      78 ..     409     431 ..     393     441 .. 0.79
   2 !   12.3   0.0   6.5e-05     0.019       7      71 ..     500     562 ..     496     600 .. 0.74

  Alignments for each domain:
  == domain 1    score: -3.9 bits;  conditional E-value: 5.4
    TIGR02410  56 DgHvskfeedwlvrhsyepkkek 78 
                   gH+ + + +w ++h+y+ ++  
  MMETSP1061-20121228|24638_1 409 PGHKQRLSDQWGIEHTYSMPLMD 431
                  58999999999999999887765 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 6.5e-05
    TIGR02410   7 LRDnCtskelyhsatkqRllnsldiaslseakkeaeveidede.lrvkWkDgHvskfeedwlvrhs 71 
                  LR  C+++ + ++ t    l + d     +++k+ +++  ++  l+v W DgH s f  + ++   
  MMETSP1061-20121228|24638_1 500 LRRACRCAACVEELTGRQILRASDVP---DTIKPLRMSGTGNYaLSVDWSDGHRSLFPYRQIRSLI 562
                  899************99977777777...778888887766655*************998887644 PP

>> TIGR00345  arsA: arsenite-activated ATPase ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.1    0.0081       2.4       4      28 ..     188     212 ..     185     218 .. 0.81
   2 !    6.3   0.0    0.0044       1.3     203     267 ..     311     375 ..     301     380 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0081
    TIGR00345   4 GKGGVGKTtisaatairlaesgkkv 28 
                   KGGVGK t s  +a  l   g  v
  MMETSP1061-20121228|24638_1 188 CKGGVGKSTTSVNLAYALQSLGANV 212
                  5**********99998887777655 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0044
    TIGR00345 203 tsfvlVvipeklslkEseRavkeLkkygikvdavivNqvlpeeaqdeflkarkelqkkylkeiee 267
                  t+ v+V++p++ls+ ++ R v+   + ++   av+ N   ++ +  + ++ + el+  + +++ e
  MMETSP1061-20121228|24638_1 311 TAAVIVTTPQELSFADVVRGVEMFDTVNVPCVAVVENMAYYDSDPASQVNNKAELEDDVRSMLAE 375
                  7889*******************************999888777777788888887777776665 PP

>> TIGR02016  BchX: chlorophyllide reductase iron protein subunit X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   0.00033     0.098       7      38 ..     188     219 ..     181     228 .. 0.87
   2 ?   -1.6   0.0      0.93   2.7e+02     235     262 ..     450     478 ..     406     524 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00033
    TIGR02016   7 GkGGiGksftttnlsaklallgkrvlqlGcdp 38 
                   kGG+Gks t  nl+  l  lg  v  + cd 
  MMETSP1061-20121228|24638_1 188 CKGGVGKSTTSVNLAYALQSLGANVGIFDCDV 219
                  69****************************95 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.93
    TIGR02016 235 plfgdlfeelaaavadellkr.pealdpe 262
                      ++++ela++v+ e+ k    ++ pe
  MMETSP1061-20121228|24638_1 450 SAQTQIYKELAKSVVSEVAKAkYSSKRPE 478
                  33455666666666655555412223333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (602 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.39
# Mc/sec: 2037.37
//
Query:       MMETSP1061-20121228|24645_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 481.76
//
Query:       MMETSP1061-20121228|24651_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|24665_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.15   10.3   7.5      0.071   11.3   1.8    2.6  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
        1.1    7.6   7.8      0.079   11.3   0.5    2.4  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   1.8   3.4e-05     0.071       6      41 ..      76     110 ..      73     115 .. 0.77
   2 ?    0.4   0.9     0.086   1.8e+02      18      32 ..     110     125 ..     108     137 .. 0.57

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.4e-05
    TIGR02811   6 kadlsRRdLLkglavgaaagavaaatgrvasasaaa 41 
                  k++ sRRd +k +a+ +aag++   ++ +a a+ a+
  MMETSP1061-20121228|24665_1  76 KQTSSRRDWIKLVAA-TAAGSALVSSPMAARAEDAV 110
                  7899*******9985.56666667788888888776 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.086
    TIGR02811  18 lav.gaaagavaaatg 32 
                  +av +a+a ava +t+
  MMETSP1061-20121228|24665_1 110 VAVdAAVAVAVAQTTP 125
                  5551344445555555 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.5   3.8e-05     0.079       2      28 ..      80     103 ..      79     107 .. 0.78
   2 ?   -0.9   0.9      0.28   5.7e+02      10      17 ..     114     121 ..     109     128 .. 0.61

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.8e-05
    TIGR01409   2 sRRdFLkaaaaagaaaglglllpspar 28 
                  sRRd +k +aa++a+ +l   ++sp+ 
  MMETSP1061-20121228|24665_1  80 SRRDWIKLVAATAAGSAL---VSSPMA 103
                  9********888888888...445544 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.28
    TIGR01409  10 aaaagaaa 17 
                  aa+a+a+a
  MMETSP1061-20121228|24665_1 114 AAVAVAVA 121
                  44554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1603.42
//
Query:       MMETSP1061-20121228|24682_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1961.63
//
Query:       MMETSP1061-20121228|24703_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 408.54
//
Query:       MMETSP1061-20121228|24714_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1699.36
//
Query:       MMETSP1061-20121228|24716_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 653.66
//
Query:       MMETSP1061-20121228|24719_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 358.26
//
Query:       MMETSP1061-20121228|24722_1  [L=772]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.44
# Mc/sec: 2315.81
//
Query:       MMETSP1061-20121228|24725_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1367.03
//
Query:       MMETSP1061-20121228|24734_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0052   13.7   0.0     0.0052   13.7   0.0    1.0  1  TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase


Domain annotation for each model (and alignments):
>> TIGR02430  pcaF: 3-oxoadipyl-CoA thiolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   1.3e-06    0.0052       3      28 ..       5      30 .]       3      30 .] 0.85

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 1.3e-06
    TIGR02430  3 vyivdairtpiGrygGslssvraddl 28
                 v i    rtpiGr++Gs+s +++ +l
  MMETSP1061-20121228|24734_1  5 VVIASIARTPIGRFCGSFSGLKGSEL 30
                 6677788************9998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.43
# Mc/sec: 92.09
//
Query:       MMETSP1061-20121228|24753_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-09   33.4   0.0    7.7e-09   33.4   0.0    1.1  1  TIGR00730 TIGR00730: TIGR00730 family protein
  ------ inclusion threshold ------
      0.033   11.0   0.0      0.042   10.6   0.0    1.1  1  TIGR03821 AblA_like_1: lysine-2,3-aminomutase-related protein


Domain annotation for each model (and alignments):
>> TIGR00730  TIGR00730: TIGR00730 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   3.7e-12   7.7e-09      84     120 ..      55      91 ..      29      94 .] 0.87

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 3.7e-12
    TIGR00730  84 edmheRKrmlaelsdaFvalPGGfGtleElmevltls 120
                  +d+ eRK+ l   +da ++lPGG Gt++El e+ +  
  MMETSP1061-20121228|24753_1  55 DDLQERKKFLVACADALIVLPGGPGTWDELWEMACAR 91 
                  799*****************************99976 PP

>> TIGR03821  AblA_like_1: lysine-2,3-aminomutase-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0     2e-05     0.042     127     170 ..      30      73 ..      21      76 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2e-05
    TIGR03821 127 kaewkealeylkqhpeinevilsGGdPLmakdeeldelveelee 170
                  ++   ++ + l+ + +i+e+i++GGd L  + + l +++++l  
  MMETSP1061-20121228|24753_1  30 QSGAAKSNRSLERRGSIRELIVAGGDDLQERKKFLVACADALIV 73 
                  4445666778999*******************999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 590.81
//
Query:       MMETSP1061-20121228|24766_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 250.08
//
Query:       MMETSP1061-20121228|24771_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1966.64
//
Query:       MMETSP1061-20121228|24791_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       508  (0.123842); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.56u 0.15s 00:00:00.71 Elapsed: 00:00:00.65
# Mc/sec: 1076.22
//
Query:       MMETSP1061-20121228|24801_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-62  207.2   0.0    8.6e-62  206.9   0.0    1.1  1  TIGR00460 fmt: methionyl-tRNA formyltransferase
    4.8e-18   63.2   0.0    8.8e-18   62.4   0.0    1.4  1  TIGR00639 PurN: phosphoribosylglycinamide formyltransferase
    1.4e-14   52.2   0.0    2.1e-14   51.6   0.0    1.2  1  TIGR00655 PurU: formyltetrahydrofolate deformylase
     0.0094   13.0   0.0      0.013   12.5   0.0    1.1  1  TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase


Domain annotation for each model (and alignments):
>> TIGR00460  fmt: methionyl-tRNA formyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.9   0.0   8.4e-65   8.6e-62       2     305 ..      73     394 ..      72     403 .. 0.88

  Alignments for each domain:
  == domain 1    score: 206.9 bits;  conditional E-value: 8.4e-65
    TIGR00460   2 kilffgsptfslkaleelrenng..fevvgvvtqpdkpagRekkllpppvkvlaekkgipvlqpekqelleeledve.elkpdvivvvsfGkllpkelldlfplgviNvHpSlLPryrGaAPiqraileGdtktgvtimqlkeelDaGdilkqeevaieeed....nskeLsdklselgaqlLietlkellegkn...kpeaqkaeeatyapkikkeeerid.weqsaeellnkiralgPlpalklaleg......krikiveakvvelarlkaskpGeivd...akkkgilvacgknelllveelqpegkkvlraedflngyr 305
                  +++f g+p++++ +l++l e+    +++v v+tqp+k   R+ k  p+pv  +ae++g+pvl+pek + +e l+ +e e kpd+ +++++G++lpk +l  + lg++N+HpSlLPr+rGa+P+qr++ +Gd   gvt+++ + ++DaG+i++q+e  ie e+    +  ++   l e g  lLie + ++l g++    +++q++e++t a  i   e+ ++ we++a+ l n++r++  +p + + le+       + ki+  + +e     +  p  +++   +kk+g+ + c + ++l +++lqp+ kk ++a +flng +
  MMETSP1061-20121228|24801_1  73 RVVFLGTPEVAATTLRKLHEDSAgkYDIVCVITQPPKRRKRKGKAEPSPVGTVAEELGLPVLCPEKANNKEFLDSLEqEIKPDLFITAAYGQYLPKRFLATPSLGTVNIHPSLLPRWRGASPVQRSLEAGDNPVGVTVLYTVSKMDAGPIIAQKEETIEDENsedaTATNVLPWLFEKGTDLLIENMPDILSGEItfdTAQPQDEEQVTQAAMIDSSEAEMKpWEETAATLHNRLRGFSMWPGAFIYLEVgegsapVKYKILDTRLIEGTA--EGGPTDLIErgpTKKDGLRLICFDGSILEINRLQPATKKPVDALSFLNGLQ 394
                  89******************98778*******************************************998887775268******************************************************************************99886666688899999**************9999862225799************876666655****************99999999998767755555666666665555..3455566652325677*********************************65 PP

>> TIGR00639  PurN: phosphoribosylglycinamide formyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   8.5e-21   8.8e-18      72     166 ..     145     240 ..      98     248 .. 0.89

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 8.5e-21
    TIGR00639  72 aeel.keeevdlivlAGfmrilgstflsafagkilNiHPsLlpafpGlhaveqAleagvkeaGctVHyvdeevDtGpiivqakvpilpedteetle 166
                   ++l +e ++dl ++A + + l ++fl + +  ++NiHPsLlp ++G   v++ leag++  G+tV y   ++D+Gpii+q++  i +e++e+  +
  MMETSP1061-20121228|24801_1 145 LDSLeQEIKPDLFITAAYGQYLPKRFLATPSLGTVNIHPSLLPRWRGASPVQRSLEAGDNPVGVTVLYTVSKMDAGPIIAQKEETIEDENSEDATA 240
                  334415569**************************************************************************9999999998765 PP

>> TIGR00655  PurU: formyltetrahydrofolate deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0     2e-17   2.1e-14     147     244 ..     139     237 ..     121     242 .. 0.91

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 2e-17
    TIGR00655 147 eaekkelellkel.evdlvvLakymriLspdfvkryenkiinihhsfLPafiGakPyqrayerGvkiiGatahyvteeLdeGPiieqdvvrvdhkdsve 244
                  +++k+ l+ l+++ ++dl + a y + L + f++      +nih s+LP + Ga P qr+ e G   +G t  y   ++d+GPii q    ++ ++s +
  MMETSP1061-20121228|24801_1 139 ANNKEFLDSLEQEiKPDLFITAAYGQYLPKRFLATPSLGTVNIHPSLLPRWRGASPVQRSLEAGDNPVGVTVLYTVSKMDAGPIIAQKEETIEDENSED 237
                  467899999998889************************************************************************998888776655 PP

>> TIGR03025  EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   1.3e-05     0.013     120     167 ..      66     115 ..      51     138 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 1.3e-05
    TIGR03025 120 kkglnarrvlivGageaaeelakklerepalgyrvvgfvddreeea..ee 167
                    + +++rv+ +G+ e a+++++kl++++a +y++v++++++++++  + 
  MMETSP1061-20121228|24801_1  66 DANGEKKRVVFLGTPEVAATTLRKLHEDSAGKYDIVCVITQPPKRRkrKG 115
                  456689**********************************9999994322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1790.65
//
Query:       MMETSP1061-20121228|24807_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1752.27
//
Query:       MMETSP1061-20121228|24810_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 307.97
//
Query:       MMETSP1061-20121228|24813_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|24815_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|24842_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       467  (0.113847); expected 82.0 (0.02)
Passed bias filter:                      251  (0.0611897); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 549.95
//
Query:       MMETSP1061-20121228|24843_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 493.22
//
Query:       MMETSP1061-20121228|24845_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 514.06
//
Query:       MMETSP1061-20121228|24865_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 364.54
//
Query:       MMETSP1061-20121228|24869_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 342.19
//
Query:       MMETSP1061-20121228|24872_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   19.7   0.4    0.00017   19.3   0.3    1.1  1  TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein


Domain annotation for each model (and alignments):
>> TIGR02953  penta_MxKDx: pentapeptide MXKDX repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.3   4.1e-08   0.00017      37      53 ..      31      47 ..      23      52 .. 0.48

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 4.1e-08
    TIGR02953 37 aMkkdamakdaMskDam 53
                 aM++dam+ daM+ Dam
  MMETSP1061-20121228|24872_1 31 AMGSDAMESDAMESDAM 47
                 33333333333333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 408.54
//
Query:       MMETSP1061-20121228|24888_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.17s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1061-20121228|24883_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 808.43
//
Query:       MMETSP1061-20121228|24907_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 464.83
//
Query:       MMETSP1061-20121228|24913_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 613.75
//
Query:       MMETSP1061-20121228|24906_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 2903.76
//
Query:       MMETSP1061-20121228|24923_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0056   14.0   0.0     0.0078   13.6   0.0    1.2  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
  ------ inclusion threshold ------
      0.024   11.3   0.1      0.027   11.1   0.1    1.0  1  TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family


Domain annotation for each model (and alignments):
>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   3.8e-06    0.0078       8      31 ..      33      56 ..      26      61 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 3.8e-06
    TIGR01832  8 alvtGantGlGqgiavglaeaGad 31
                 ++vtG+++G+G++ ++ la+a a+
  MMETSP1061-20121228|24923_1 33 VFVTGCDSGMGKATVIRLAKANAN 56
                 68******************9875 PP

>> TIGR02823  oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1   1.3e-05     0.027     121     168 ..       5      52 ..       2      56 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.3e-05
    TIGR02823 121 milGtAGfTAaLsvealekagltpeegevlVtGAtGgVgslavalLsk 168
                  +++ +A  T    +  l ++ l+p++g+v VtG   g g  +v  L+k
  MMETSP1061-20121228|24923_1   5 IAIAIAIATGIWWMPMLANRTLRPKRGSVFVTGCDSGMGKATVIRLAK 52 
                  55666666777778889999*******************999877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 435.56
//
Query:       MMETSP1061-20121228|24930_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2292.70
//
Query:       MMETSP1061-20121228|24932_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00032   18.2   2.7    0.00047   17.6   1.9    1.3  1  TIGR00036 dapB: dihydrodipicolinate reductase
    0.00082   16.5   0.3       0.25    8.3   0.2    2.4  2  TIGR01746 Thioester-redct: thioester reductase domain


Domain annotation for each model (and alignments):
>> TIGR00036  dapB: dihydrodipicolinate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   1.9   2.3e-07   0.00047       3      92 ..      95     176 ..      93     213 .. 0.70

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.3e-07
    TIGR00036   3 kvavaGaaGrmGrevikavkeaedlelvaalerkgsskqgkDiGelagigkvgvpveddleavkvla.ekkadvliDfttpeavlenvkia 92 
                  kv+vaGa+G+ Gr+v++++++a +l++v+ +   + +k    +Ge + + +  + +++  + ++ ++  k+ dv+ D       +++++++
  MMETSP1061-20121228|24932_1  95 KVVVAGATGQTGRRVLERLANAGNLQVVGGVR--NVEKATASLGESSTVVRGAM-IQKVASVDTSAVaLKHLDVVKD------SVDELAAT 176
                  8*****************************99..78999999999888876555.5555554433222556666544......34444444 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.2   0.00012      0.25       1      40 [.      95     133 ..      95     143 .. 0.89
   2 !    5.8   0.0   0.00074       1.5     174     204 ..     258     290 ..     205     298 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00012
    TIGR01746   1 tvlLTGAtGfLGaylleeLlrrsteakviClVRakseeha 40 
                  +v++ GAtG  G++ le L +   + +v+  VR  +++ a
  MMETSP1061-20121228|24932_1  95 KVVVAGATGQTGRRVLERLANAG-NLQVVGGVRNVEKATA 133
                  599*******************6.99***99998776554 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.00074
    TIGR01746 174 Ellvreasdr..glpvtivRpGrilgdsetGai 204
                  E+lv+e   +  gl+ tivRpG + +++ tGa+
  MMETSP1061-20121228|24932_1 258 EKLVAENYLKssGLDYTIVRPGGLKAKPPTGAL 290
                  788888766667****************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1746.32
//
Query:       MMETSP1061-20121228|24936_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   12.9   0.0      0.023   11.8   0.0    1.6  1  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit


Domain annotation for each model (and alignments):
>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.5e-06     0.023     156     204 ..     159     205 ..     145     239 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.5e-06
    TIGR02853 156 vlGlGrtGktiarllsalgakvsvaareskdlarilelglepvelkele 204
                  v+G+Gr G+ i+++++  g  v  +  + +d+a  + + + p+  ++ +
  MMETSP1061-20121228|24936_1 159 VIGFGRFGQFISKTFAKHGKIVVTSRSDYTDIANEMGAEYVPL--SDSK 205
                  9**************9988766666666788887555555554..4433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       226  (0.0550951); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 2411.34
//
Query:       MMETSP1061-20121228|24966_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|24980_1  [L=423]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (423 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1993.98
//
Query:       MMETSP1061-20121228|24997_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-16   58.4   3.1    1.3e-16   58.4   0.1    1.9  2  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
    8.7e-15   52.2   0.1    1.4e-14   51.5   0.1    1.3  1  TIGR01179 galE: UDP-glucose 4-epimerase
    4.5e-13   46.8   0.0    7.1e-13   46.1   0.0    1.3  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
      1e-07   29.3   0.4    1.7e-07   28.5   0.3    1.3  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
    0.00011   19.2   0.0    0.00018   18.5   0.0    1.5  1  TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
    0.00081   16.2   0.7      0.015   12.0   0.3    2.5  2  TIGR03466 HpnA: hopanoid-associated sugar epimerase
     0.0012   15.9   0.0     0.0019   15.2   0.0    1.3  1  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
     0.0078   13.3   0.0      0.008   13.2   0.0    1.2  1  TIGR01472 gmd: GDP-mannose 4,6-dehydratase


Domain annotation for each model (and alignments):
>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.2     0.082        42       2      17 ..      11      26 ..      10      41 .. 0.75
   2 !   58.4   0.1   2.6e-19   1.3e-16      55     318 ..      48     323 ..      29     325 .] 0.78

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.082
    TIGR01181  2 lLvtGGaGfiGsnfvr 17
                 ++vtGG+G++G+ +  
  MMETSP1061-20121228|24997_1 11 VMVTGGSGLVGQGIKD 26
                 68*********87543 PP

  == domain 2    score: 58.4 bits;  conditional E-value: 2.6e-19
    TIGR01181  55 vkgdiadrelverllkeedvdavvnfaaes.hvDrsisepeafietnvvGtytlleavrkelkevrllhistDevyGd..lekdd.aeftettplaPssPysaskaasdllvrayartyglpvlitrcsnnyGpyq.fp.ek..liPllitnala....gkklpvyGdGqqvrDwlyveDhcraielvlekgrvgevynigg..eeertnlevvkiilelldkdedlieyvedr.pGhDrryaldaskikreLgwkpkvtfe...eglrktvkWylenesww 318
                    gd++dr+  e +++++++  v+++aa        +s+  +f + n++    ++e++r +  e  +  +st  ++ +  +  +d + + +  p   +  y+ +k   d++ ray + yg + +   ++n yG ++ f+ ek  +iP li +  +    + +  ++G+G+ +r +ly +D ++    v ++ ++ +   +g   e e t ++v   + + ++  e ++++ +++  G+ +r a + +k +   +++p ++f    +g++++v+W++en +  
  MMETSP1061-20121228|24997_1  48 KDGDLTDRKATEAVFEKYKPTHVIHLAAKVgGLFANMSQKVEFYRENIIMNDNVMECCRIYKVEKLVGMLST-CIFPEktIYPTDeTMIHNGPPHRSNEGYAFAKRMIDTMNRAYREEYGCNFTSIVPTNIYGKHDnFSiEKghVIPGLIHKCYKakkdNTPFCIWGTGSPLRQFLYNRDLAELTVWVTREYNESDPIILGVdeEDEVTIKDVALAVAKAMK-FEGKVDFDTSKaDGQHKRTACN-KKFR---KYRPDYNFTsmpDGIQQSVDWFVENYETA 323
                  469*************************962578899********************999654444445566.45543226666646677778899999**********************************9863433665599999988755111156789******************9999999888887766666511556677899999999987.8999999888725899999887.5666...6777776542228***********97765 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.1   2.6e-17   1.4e-14       2     326 ..      11     317 ..      10     323 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 2.6e-17
    TIGR01179   2 iLvtGgaGyiGshvvrqllekgkevvvlDnlskgskealkalekitevklvegdladkekleavleeekidaviHfaalia.vgEsvkePlkYYennvvntleLleamqkagvkkliFsssaavYgesekvpisEespln.....pinpYGrsklmvErilkdlkkadkelkvviLRYFnvaGAdeegeiGeasknathliklvaevavgkrekleifGtdyptkDGtcvRDyiHveDlaeaHlaalealeeggesevynlGagqgfsvkevieavkkvsgkdikveladrRaGDpaslvadaskikrelgwkpkyd..dLeeiiksawdWek 326
                  ++vtGg+G +G  +   ++e++       n  +g++++    +         gdl+d+++ eav+e+ k+  viH+aa++      +++ +++Y++n+    +++e+++ ++v+kl+   s+ ++ e++  p  E++  n     + + Y  +k+m++ + +++++  ++ +++++   n+ G + + +i  + + ++ li+   ++    +  + i+Gt      G  +R +++  Dlae  +   +  +e ++  ++ +       +k+v  av k+   + kv ++  +a    +  a+++k ++   ++p y+   + + i+++ dW  
  MMETSP1061-20121228|24997_1  11 VMVTGGSGLVGQGIKDFVTENNN-----ANQKEGEAWIFLSSK--------DGDLTDRKATEAVFEKYKPTHVIHLAAKVGgLFANMSQKVEFYRENIIMNDNVMECCRIYKVEKLVGMLSTCIFPEKTIYPTDETMIHNgpphrSNEGYAFAKRMIDTMNRAYREE-YGCNFTSIVPTNIYGKHDNFSIE-KGHVIPGLIHKCYKA-KKDNTPFCIWGT------GSPLRQFLYNRDLAELTVWVTREYNE-SDPIILGVDEEDEVTIKDVALAVAKAMKFEGKVDFDTSKADGQHKRTACNKKFRK---YRPDYNftSMPDGIQQSVDWFV 317
                  56777777777665554444443.....366666666666666........7**************************98538899*******************************9999999999999999999977653112467899*************888.********************995.556789999886665.557889*****8......8889***********98887776654.7888999999999************999999999999888888888888888875...5555441145555777777765 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.1   0.0   1.4e-15   7.1e-13      55     268 ..      49     279 ..      11     297 .. 0.83

  Alignments for each domain:
  == domain 1    score: 46.1 bits;  conditional E-value: 1.4e-15
    TIGR04180  55 lGdirdaesvkkavkgv..dvvfhlaaliaiPysyvape.syvetnvkGtlnvlqaardlevekvvhtstsevyGtaqyvPidek..h...plqaqsPysaskigadqlalsfyrsfelPvaivrPfntyGPrqs....araviPtiitqilsgkkk....iklGslsPtrdfnyvkdtvegfiavaes.dkavGevinigsnfeisigdtvkliaeilgkeveivtdeer 268
                   Gd+ d ++ +++ ++   ++v+hlaa ++  ++ ++ +  +   n+    nv++++r ++vek+v   ++ ++    + P de+  h   p ++   y+ +k   d++  ++ + +    + + P n yG           viP +i +  ++kk        G+ sP r f y +d +e  + v++  +++   ++ +  + e++i+d++  +a++++ e ++  d+++
  MMETSP1061-20121228|24997_1  49 DGDLTDRKATEAVFEKYkpTHVIHLAAKVGGLFANMSQKvEFYRENIIMNDNVMECCRIYKVEKLVGMLSTCIFPEKTIYPTDETmiHngpPHRSNEGYAFAKRMIDTMNRAYREEYGCNFTSIVPTNIYGKHDNfsieKGHVIPGLIHKCYKAKKDntpfCIWGTGSPLRQFLYNRDLAELTVWVTREyNESDPIILGVDEEDEVTIKDVALAVAKAMKFEGKVDFDTSK 279
                  5899999988888876522589************99986368899*********************98887888888888888763323337888999*********************************98752122357********99888762232457*****************988877651566666778999*****************999888887765 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.3   3.3e-10   1.7e-07       1     314 [.      11     317 ..      11     319 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.3e-10
    TIGR02197   1 iivTGgaGfiGsnlvaalnekgetdilvvDklrkgekllnlkdeeiadyidkeellerlekeelkkveavfHegAisdTteld...gellmenNyeyskellelcaekev.kliYASSAavYGdseeefreekele.....rPlNvYgySKllfDelvrkevlkekksaqvvGlryFNVyGprEehKgkmaSvvfklfnqikkekkvkL.FksseqlkdGeqlRDFvyvkDvvkvnllllekkeksGifnvGtgk..arsfndlaaavvkalgkdekieyidmPealrgkyqkfTqadleklreagykkeflsleegvkdYvkell 314
                  ++vTGg+G++G  +   + e++++      + ++ge ++ l+ ++  +++ + + +e + ++   k + v+H +A    +  +   +    + N+ +  +++e+c   +v kl+   S  ++ +++   ++e+  +     r    Y+++K ++D++ r  + +e+   +++ +   N+yG+++++  +   v+  l++++ k kk +  F    +   G  lR F+y +D +++++++ ++ ++s    +G  +    + +d+a av ka++ + k+++     + ++  q    a  +k+r+   + +f+s+ +g+++ v+++ 
  MMETSP1061-20121228|24997_1  11 VMVTGGSGLVGQGIKDFVTENNNA------NQKEGEAWIFLSSKD--GDLTDRKATEAVFEK--YKPTHVIHLAAKVGGLFANmsqKVEFYRENIIMNDNVMECCRIYKVeKLVGMLSTCIFPEKTIYPTDETMIHngpphRSNEGYAFAKRMIDTMNR--AYREEYGCNFTSIVPTNIYGKHDNFSIEKGHVIPGLIHKCYKAKKDNTpFCIW-G--TGSPLRQFLYNRDLAELTVWVTREYNESDPIILGVDEedEVTIKDVALAVAKAMKFEGKVDFD----TSKADGQHKRTACNKKFRKYRPDYNFTSMPDGIQQSVDWFV 317
                  689********9998888888754......568899999776654..555666666666553..78899999999877654441113456789999*********98777256677899999976665555555546766677889**********998..446666779999999**********9888888888888876655544314433.3..36789******************999998666666551166899***********77777763....33556777788888999999999999999999999999976 PP

>> TIGR02622  CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   3.6e-07   0.00018      40     127 ..      29     117 ..       9     197 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 3.6e-07
    TIGR02622  40 tkpnlfellklakklkdssvlgdirdaeklekaieevkPeivfhlaaqp.lvrksYkdPletfetnvlGtvnlleavralesvkavvlv 127
                  t++n+ ++ + +  +  ss  gd++d+++ e+++e++kP  v+hlaa+     +  ++ +e ++ n++   n++e  r  +  k v ++
  MMETSP1061-20121228|24997_1  29 TENNNANQKEGEAWIFLSSKDGDLTDRKATEAVFEKYKPTHVIHLAAKVgGLFANMSQKVEFYRENIIMNDNVMECCRIYKVEKLVGML 117
                  556666666666666667899**************************9633456778899****************9998877765444 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.3     3e-05     0.015       2     129 ..      10     133 ..       9     198 .. 0.68
   2 ?    1.4   0.0     0.049        25     269     324 ..     262     319 ..     242     322 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 3e-05
    TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnleeldvEiveGdlkdeaslkkalkGce..alfHvAAdyr.lwak..dpeelykanvegtravleaAleagvervvytssvatlgvkedgkeadet 129
                   v+vtG++G vG+ +   ++e+ ++         +++  + +      Gdl+d+++ ++  +  +   ++H+AA+   l+a+  ++ e+y++n+    +v+e  +  +ve++v   s  ++  ++   ++det
  MMETSP1061-20121228|24997_1  10 VVMVTGGSGLVGQGIKDFVTENNNA--------NQKEGEAWIFLSSKDGDLTDRKATEAVFEKYKptHVIHLAAKVGgLFANmsQKVEFYRENIIMNDNVMECCRIYKVEKLVGMLSTCIFP-EKTIYPTDET 133
                  5899999999999888777765432........222222456667789******999888876543389*****985377752256689************************988877766.4455677776 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.049
    TIGR03466 269 alakltgkePlvtvdgvrmakkkmffssakAereL..gyrqrpaeealkdaveWfrae 324
                  a+ak ++ e  v  d+ +   ++     +k  r+    y+ +++ +++++ v+Wf+++
  MMETSP1061-20121228|24997_1 262 AVAKAMKFEGKVDFDTSKADGQHKRTACNKKFRKYrpDYNFTSMPDGIQQSVDWFVEN 319
                  56666667777777777777666666666665554236999999***********987 PP

>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.6e-06    0.0019       2      66 ..      11      82 ..      10     119 .. 0.71

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.6e-06
    TIGR01214  2 ilitGakgqlgreLveqlsk.......egsevvaltrsqldledpealeellreikPdvvvntaAytdVDka 66
                 +++tG++g++g+ + + +++       eg++ + l++++ dl+d +a e ++++ kP  v++ aA +    a
  MMETSP1061-20121228|24997_1 11 VMVTGGSGLVGQGIKDFVTEnnnanqkEGEAWIFLSSKDGDLTDRKATEAVFEKYKPTHVIHLAAKVGGLFA 82
                 799********999876654100001245556666777**************************97755555 PP

>> TIGR01472  gmd: GDP-mannose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.6e-05     0.008      51     175 ..      37     167 ..      13     315 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.6e-05
    TIGR01472  51 keeka.lfl..hyGdltdsssllklieeikpteiynlaaqs...hvkvsfeipeytadvdgiGtlrlleavrildlakkirfyqastselyGevkeipqkekt.....pfnprspyaaaklyayyivvnyreaygl 175
                  ke +a +fl  + Gdltd ++   + e+ kpt +  laa+      ++s ++  y  +++     +++e  ri   +k + +     + ++ e +  p +e+      p      ya ak +   +   yre yg 
  MMETSP1061-20121228|24997_1  37 KEGEAwIFLssKDGDLTDRKATEAVFEKYKPTHVIHLAAKVgglFANMSQKVEFYRENIIM--NDNVMECCRIYKVEKLVGMLS---TCIFPEKTIYPTDETMihngpPHRSNEGYAFAKRMIDTMNRAYREEYGC 167
                  3334456663357**************************9633357788888888877654..557888888888887776653...44566666666655542222166777789****999999999*****86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.35
# Mc/sec: 1225.61
//
Query:       MMETSP1061-20121228|25008_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-06   23.6   2.2    2.9e-06   23.2   1.5    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    3.7e-05   21.3   0.1    6.4e-05   20.5   0.1    1.4  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    0.00022   17.8   1.4    0.00034   17.2   1.0    1.3  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0045   14.4   0.0     0.0069   13.8   0.0    1.2  1  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   1.5   2.9e-09   2.9e-06     108     245 ..      17     159 ..       9     180 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 2.9e-09
    TIGR02917 108 kvldelekksslddeeaaellalrglAaLglgeleeAqksleqAlaiapksl.....eaklglAqlalaen..kldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatilleegefee 245
                   vl+ +++ + + +   +e l+ rg Aa g +   +A+  +e+ l+i   s      +a + +   ++++n  ++++ar ++++  + dpk v+A+  +g+ ll++   +eAl+a++ka +l+p ++a ll l+    ++ e e+
  MMETSP1061-20121228|25008_1  17 AVLEATPDDD-DGKVRLVEELQSRGRAAVGAKSWMDAKLLYEKCLTITDCSVvdnkkKAIFHSNLSLVENNmgEFEKARVAAEAGTKDDPKYVKAWWRLGQALLALHRPQEALDAFKKAKALDPTNKA-LLKLVEKTKKQVEEEA 159
                  5666666666.666677888999***********************9876541111145555555555555889**************************************************9865.5555554444444444 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   6.2e-08   6.4e-05      49     133 ..      71     155 ..      47     157 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 6.2e-08
    TIGR02552  49 pteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekeeyselkeraeaml 133
                    +a ++  L+++   ++e+e+A+ a ++ ++ d++  ++ +++++ llal++++eAl+a+k a +++  +++  +l e+ ++ +
  MMETSP1061-20121228|25008_1  71 KKKAIFHSNLSLVENNMGEFEKARVAAEAGTKDDPKYVKAWWRLGQALLALHRPQEALDAFKKAKALDPTNKALLKLVEKTKKQV 155
                  556678999************************************************************9999999999887765 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   1.0   3.4e-07   0.00034     127     246 ..      33     159 ..      20     228 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 3.4e-07
    TIGR00990 127 aaklkekGnkayrnkdfdkaielyskalll........kedPvyysnraacynaladlekvvedttaaleldpdyvkalnrranaydqlgkyadalldltassliddfrdeqsaqaverllkkfaesk 246
                    +l+ +G  a + k + +a  ly+k l +        k+  +++sn++   n ++++ek    + a  + dp+yvka  r  +a   l + ++al  +      d   ++   + ve+  k+  e+ 
  MMETSP1061-20121228|25008_1  33 VEELQSRGRAAVGAKSWMDAKLLYEKCLTItdcsvvdnKKKAIFHSNLSLVENNMGEFEKARVAAEAGTKDDPKYVKAWWRLGQALLALHRPQEALDAFKKAKALDP-TNKALLKLVEKTKKQVEEEA 159
                  5578899999999999999999999988653334444478899******************99999****************************9876665555544.55666677887654443333 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   6.7e-06    0.0069      26     100 ..      69     143 ..      58     146 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 6.7e-06
    TIGR02521  26 drekaakirvqLaleYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngd 100
                  d++k a ++ +L l   + g++ekA+ + e   + dpk+ +a+  l+ ++  l + ++A ++f+kA +l+p n +
  MMETSP1061-20121228|25008_1  69 DNKKKAIFHSNLSLVENNMGEFEKARVAAEAGTKDDPKYVKAWWRLGQALLALHRPQEALDAFKKAKALDPTNKA 143
                  55666777777777777899***************************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 2131.38
//
Query:       MMETSP1061-20121228|25022_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 326.83
//
Query:       MMETSP1061-20121228|25026_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 1041.77
//
Query:       MMETSP1061-20121228|25041_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 796.33
//
Query:       MMETSP1061-20121228|25064_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 626.95
//
Query:       MMETSP1061-20121228|25074_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 373.01
//
Query:       MMETSP1061-20121228|25068_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1860.62
//
Query:       MMETSP1061-20121228|25099_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.11s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 2142.28
//
Query:       MMETSP1061-20121228|25112_1  [L=334]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-07   27.1   0.5     0.0032   14.4   0.1    3.0  3  TIGR01293 Kv_beta: voltage-dependent potassium channel beta subunit


Domain annotation for each model (and alignments):
>> TIGR01293  Kv_beta: voltage-dependent potassium channel beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.8   0.0    0.0026        11      97     125 ..     101     129 ..      19     141 .. 0.86
   2 !    7.1   0.0   0.00013      0.52     124     217 ..     159     246 ..     147     255 .. 0.80
   3 !   14.4   0.1   7.7e-07    0.0032     256     317 ..     258     317 ..     245     319 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0026
    TIGR01293  97 rkhiieglkaslerlqleyvdivlanrad 125
                  + h+  gl  +l+ l+l+y+d+ l++ ++
  MMETSP1061-20121228|25112_1 101 KEHVKIGLLKTLNDLRLDYLDLYLIHWPQ 129
                  4588889999*************999765 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00013
    TIGR01293 124 adpsspmeevvramtyvinqglalywgtsrwsaveimeaysvarqfnlippiveqaeyhlfqrekvelqlpelyhkigvgavtwsplalalvds 217
                   dp   ++e+ +am  ++++gl  + g s +    + e  +       ipp v+q e h + ++    +l    +k  v + ++spl  + +++
  MMETSP1061-20121228|25112_1 159 IDPGVSVHETWKAMEELVEEGLVRHIGVSNFPVSLLHELMAGG---HKIPPAVNQVEMHPYLQQS---NLLAYCKKRNVHVQAYSPLGTSGIKG 246
                  599999************************9887777765544...569**********998765...34456678888888999988776665 PP

  == domain 3    score: 14.4 bits;  conditional E-value: 7.7e-07
    TIGR01293 256 laalaeklgctlaqlaiawslrsegvssvllgassaeqlmeslgslqvllklsssvvlelda 317
                  l+a+a k g t+aq+++aw+lr+   +sv+  ++s e  +e+  +      ls + + e+d 
  MMETSP1061-20121228|25112_1 258 LRAIAAKHGITVAQVCLAWALRRG--TSVVAKSASPEHQQENWAASSESIVLSDDEMAEIDG 317
                  89*******************975..356666667777788888888888889999998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (334 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 1102.11
//
Query:       MMETSP1061-20121228|25105_1  [L=757]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (757 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.10s 00:00:00.46 Elapsed: 00:00:00.55
# Mc/sec: 1816.65
//
Query:       MMETSP1061-20121228|25119_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1499.02
//
Query:       MMETSP1061-20121228|25118_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.19s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1945.62
//
Query:       MMETSP1061-20121228|25127_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1205.12
//
Query:       MMETSP1061-20121228|25147_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.16s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 567.55
//
Query:       MMETSP1061-20121228|25171_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.18s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1416.34
//
Query:       MMETSP1061-20121228|25180_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1853.85
//
Query:       MMETSP1061-20121228|25179_1  [L=749]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (749 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.46
# Mc/sec: 2149.13
//
Query:       MMETSP1061-20121228|25188_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-19   66.1   6.3    1.5e-18   65.2   4.4    1.5  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    3.2e-10   36.9  21.8      4e-10   36.5  15.1    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
  ------ inclusion threshold ------
        0.1   10.5   8.6     0.0099   13.8   1.0    2.4  2  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.2   4.4   1.1e-21   1.5e-18       2     117 ..      17     130 ..      15     146 .. 0.78

  Alignments for each domain:
  == domain 1    score: 65.2 bits;  conditional E-value: 1.1e-21
    TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrr..rskarrge 117
                  Y ++L v+kd s ++++kAY k+a+++HPD+n+ +++a+ kf+ i+ Ay  L+d++kr+ YD+ g+  ++++  +++   e++++s  + ++ if+++  +++ s  +  + ++++++
  MMETSP1061-20121228|25188_1  17 YKDVLRVPKDCSPSQLRKAYYKQAREFHPDKND-SEDAKLKFQAISFAYSLLKDPKKREDYDKDGTIPFDDDDDETN---EHSKKSWKEYFDLIFGKLSTDDIDSFAQkyKMSDEEEK 130
                  668******************************.99*********************************99754422...22233345667777877777666533332344444444 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5  15.1   2.9e-13     4e-10       4     190 ..      17     210 ..      13     239 .. 0.66

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2.9e-13
    TIGR03835   4 yyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDredd..ldfdadvfdsffeeieksdefddlt...dddkkskkkkkk..kkkgwfwakskeeektieteeiidvdasveda.......netrlfddtl...DdqleesvktasaddaerlfddnkepsvtaGldde 190
                  y +vL + +D   ++++ka+ k a+ +hPD+n+  da+  f+ i  a+  L +Pkkr+ yDk G    D++dd   +     ++ +f+ i      dd+    ++ k s++ +k     +  f +  k+  + + + e  d+   +ed+       n+ ++f++ l    +q+e+ + + ++++ae++++         G++d+
  MMETSP1061-20121228|25188_1  17 YKDVLRVPKDCSPSQLRKAYYKQAREFHPDKNDSEDAKLKFQAISFAYSLLKDPKKREDYDKDGTIPFDDDDDetNEHSKKSWKEYFDLIFGKLSTDDIDsfaQKYKMSDEEEKDvlGNYVKFKGNLKKMLEFVMLSEERDIHRWIEDYiqpaidkNKVENFEEMLrktRAQIEKKIAQ-EKNKAEKEMN---------GVHDN 210
                  668*************************************************************7777666551134566777888888865555555543336666555555541167888999999998888999999999999988221111133334444444334444444432.2233333333.........32222 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.8   1.0   7.3e-06    0.0099       6      56 ..      30      76 ..      27     141 .. 0.73
   2 ?    0.2   0.6      0.11   1.6e+02      90     123 ..     164     197 ..     140     209 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.3e-06
    TIGR00714  6 kaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56
                 ++Lrk y k  +++HPD  k+  e   a  +   +  Ay+ Lkdp kR +y
  MMETSP1061-20121228|25188_1 30 SQLRKAYYKQAREFHPD--KNDSE--DAKLKFQAISFAYSLLKDPKKREDY 76
                 6899*************..55555..6777888999************998 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.11
    TIGR00714  90 eeieqakdeaaleklkkkvkkeiqsllaalveal 123
                  + i+ a d+ ++e++++  +k   ++++++ +  
  MMETSP1061-20121228|25188_1 164 DYIQPAIDKNKVENFEEMLRKTRAQIEKKIAQEK 197
                  4555677888888888888888888877777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       330  (0.0804486); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1508.45
//
Query:       MMETSP1061-20121228|25196_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1077.91
//
Query:       MMETSP1061-20121228|25214_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0028   15.8   2.9     0.0065   14.7   2.0    1.6  1  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   2.0   1.6e-06    0.0065       7      43 ..      25      74 ..      24      75 .] 0.79

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.6e-06
    TIGR03892  7 etfEisDyadlaevga.............ssgatstsssSsCsTcsctsS 43
                 e fEi ++++++++               s   +s sss s+s +s++sS
  MMETSP1061-20121228|25214_1 25 EFFEILELEEKSRQWYgwklpagyfrklgSELRISISSSGSSSGSSSSSS 74
                 789*******8887777778888889997777888888888888887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 412.47
//
Query:       MMETSP1061-20121228|25212_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-13   46.6   0.0    1.4e-06   25.7   0.0    2.6  2  TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase
    7.7e-07   25.5   0.0      1e-06   25.1   0.0    1.1  1  TIGR03675 arCOG00543: arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein
     0.0012   15.1   0.0     0.0017   14.7   0.0    1.2  1  TIGR00649 MG423: conserved hypothetical protein
  ------ inclusion threshold ------
      0.032   11.1   0.0      0.048   10.5   0.0    1.2  1  TIGR02651 RNase_Z: ribonuclease Z


Domain annotation for each model (and alignments):
>> TIGR03413  GSH_gloB: hydroxyacylglutathione hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0     3e-07   0.00031      41      77 ..      80     116 ..      37     140 .. 0.72
   2 !   25.7   0.0   1.3e-09   1.4e-06      80     166 ..     170     263 ..     156     292 .. 0.85

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 3e-07
    TIGR03413  41 glkleaillTHhHaDHvggvaellekfpvkvvgpaee 77 
                  g +++++++TH H DH+g+   l e f+++++ +++e
  MMETSP1061-20121228|25212_1  80 GKSVNKVIVTHAHVDHIGASGWLCEYFNAPLYMTQKE 116
                  557899************************9988876 PP

  == domain 2    score: 25.7 bits;  conditional E-value: 1.3e-09
    TIGR03413  80 pgltkevkegdevellelevevlevpGHtlgHiayyleeekvlFcgDtLfsaGCGrlfegtae.......qmleslqklaaLpeetkvycaHEY 166
                  p++ +++++ + ++++e++++v+   GH + H + y+e+ +++ +gD ++      +  g ++         l+sl++l++Lp+et+v +aH +
  MMETSP1061-20121228|25212_1 170 PEQLNPLEDAQFITIGEHQWQVIVSEGHSVAHASLYCEALGLMISGDQVLPRISSNVSVGPHDpdgnpllSWLTSLERLQSLPAETLVLPAHNF 263
                  5667789999***************************************9877777765543211222225789******************87 PP

>> TIGR03675  arCOG00543: arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0     1e-09     1e-06     192     265 ..      47     118 ..      44     139 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1e-09
    TIGR03675 192 llstkeskvllDcGvnvaaeeeealPyldvpevkleelDavvithahlDhvglvPllfkygyegPvYlteptrd 265
                  ll+  +  v++DcG+ +  ++ +    +  + +  ++++ v++thah+Dh+g    l +y +++P+Y+t+   d
  MMETSP1061-20121228|25212_1  47 LLEDGDGWVVVDCGLFIP-NTVDVWERVFEKYLGGKSVNKVIVTHAHVDHIGASGWLCEY-FNAPLYMTQKEYD 118
                  677778889999999887.555556666666667899**********************9.9*******97665 PP

>> TIGR00649  MG423: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.6e-06    0.0017      57      91 ..      81     114 ..      44     132 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.6e-06
    TIGR00649  57 dkvkgivlthghedhiGaveyllkkleippiygtk 91 
                  + v+ +++th+h dhiGa  +l + + ++p+y t+
  MMETSP1061-20121228|25212_1  81 KSVNKVIVTHAHVDHIGASGWLCEYF-NAPLYMTQ 114
                  568889*****************999.56699887 PP

>> TIGR02651  RNase_Z: ribonuclease Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.7e-05     0.048      45      65 ..      76      96 ..      48     104 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.7e-05
    TIGR02651 45 skisfkkidkIfitHlHgDHi 65
                 + ++ k+++k+++tH H DHi
  MMETSP1061-20121228|25212_1 76 KYLGGKSVNKVIVTHAHVDHI 96
                 5567799*************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1705.71
//
Query:       MMETSP1061-20121228|25238_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|25256_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-39  134.2   0.0    1.4e-39  134.0   0.0    1.0  1  TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
    5.2e-30  102.6   0.0    5.7e-30  102.5   0.0    1.0  1  TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01534  GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.0   0.0   6.9e-43   1.4e-39     218     330 .]       2     113 ..       1     113 [. 0.97

  Alignments for each domain:
  == domain 1    score: 134.0 bits;  conditional E-value: 6.9e-43
    TIGR01534 218 kavakvlpelagkltgeavRvPtpdvSlvdlvlnlekevtkeevnaalkeaseg.lkgvlgysedelVSsDiigspkssivdakatkvtelkeklvkvvaWYDNElgysnrlvd 330
                  kav+kvlp+lagkltg+a+RvPt+dvS+vdl++++ k +tke+v ++lk+ase  l+g+l+y+e+ +VSsD+i ++ s +vd  a++  +   ++ kv+aWYDNE+gysnrlvd
  MMETSP1061-20121228|25256_1   2 KAVGKVLPQLAGKLTGMAIRVPTADVSIVDLTFRTGKAATKEQVLEVLKRASEReLSGILAYTEEAVVSSDFIHDSASCTVDGAASMSLN--PHFHKVIAWYDNEWGYSNRLVD 113
                  8**************************************************************************************955..56******************97 PP

>> TIGR01532  E4PD_g-proteo: erythrose-4-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.5   0.0   2.8e-33   5.7e-30     214     325 .]       2     113 ..       1     113 [. 0.98

  Alignments for each domain:
  == domain 1    score: 102.5 bits;  conditional E-value: 2.8e-33
    TIGR01532 214 kgierllpkladrleaiavrvptvnvtaldlsvtvkkdvkanevnrvlreaaesalrgivdytelplvsvdfnhdphsaivdgtqtrvsgarlvkllvwcdnewgfanrmld 325
                  k + ++lp+la++l  +a+rvpt +v+ +dl+ ++ k    ++v +vl++a+e  l gi++yte   vs df hd  s  vdg+ +   ++++ k+++w+dnewg++nr++d
  MMETSP1061-20121228|25256_1   2 KAVGKVLPQLAGKLTGMAIRVPTADVSIVDLTFRTGKAATKEQVLEVLKRASERELSGILAYTEEAVVSSDFIHDSASCTVDGAASMSLNPHFHKVIAWYDNEWGYSNRLVD 113
                  56789********************************************************************************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 754.22
//
Query:       MMETSP1061-20121228|25267_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 771.09
//
Query:       MMETSP1061-20121228|25254_1  [L=716]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.29    7.6  19.7      0.063    9.7   6.3    2.3  2  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   6.3   1.5e-05     0.063     201     242 ..     217     260 ..     178     289 .. 0.70
   2 ?    3.4   1.9    0.0013       5.3     197     232 ..     678     710 ..     601     716 .] 0.69

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1.5e-05
    TIGR01651 201 eelgddeesedeedtdddqpredeqeee..geeeeegdeasaae 242
                  e   dd+e++deed+ddd+p+ +e ++e   ++eee +++ +++
  MMETSP1061-20121228|25254_1 217 EVTDDDDEDDDEEDGDDDKPKVEEVDDEeeVDDEEEAKKEKKTK 260
                  2334569999**********988755540044444433333322 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.0013
    TIGR01651 197 lelaeelgddeesedeedtdddqpredeqeeegeee 232
                  l l   + dd++++deed+ dd p  d+++++ ee 
  MMETSP1061-20121228|25254_1 678 LGL--SI-DDDDDADEEDDMDDLPPLDDDDDDNEES 710
                  333..33.5556666666666666655555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (716 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 2779.54
//
Query:       MMETSP1061-20121228|25266_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2523.02
//
Query:       MMETSP1061-20121228|25275_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.17
# Mc/sec: 574.54
//
Query:       MMETSP1061-20121228|25289_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.024   11.6   0.1       0.12    9.4   0.1    1.9  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase


Domain annotation for each model (and alignments):
>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   0.1   2.8e-05      0.12     166     196 ..      50      88 ..       1      89 [] 0.72

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 2.8e-05
    TIGR01249 166 neqlveayhkrl........qsedeevklaaakaWadWe 196
                  ++++++ay++ l           d++++laaa++W  We
  MMETSP1061-20121228|25289_1  50 GRDVLHAYYDCLlgsrndanGTADNSLRLAAARSWMMWE 88 
                  46677777776622221111246999************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 559.38
//
Query:       MMETSP1061-20121228|25288_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.071    9.2  12.6      0.086    9.0   8.7    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   8.7   2.1e-05     0.086     178     314 ..      26     178 ..       7     196 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 2.1e-05
    TIGR00934 178 rksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesis....slrfdeskekkkstrvp.sekfakrresrdidpedlyrsimmlqekheatakirdk........iseanslaaesdees.......sesrriqekikrrlstssie 314
                    s+++++ + +lf+G ++++ ++d    ++++++ +++ +++++++      + ++ ++ ++ +r + s++ +++ ++++++  d +  ++  q +h+ ++  r++        i++a   a e+++ +       ++  r q++ ++++s +s+ 
  MMETSP1061-20121228|25288_1  26 FPSSSSSSSSSRLFQGFFENNIDDDAGSYNHENHNHNHNHNHNHNHNhnhnHNHANNRHNPNRGARFSgSNQDQSQNQNQNVNYYDYEFHNEREQRHHNHNNYNRNRgyyesldfIKNA---ARERRR-NapgvdamGSRPRHQQQQQQQPSPRSRP 178
                  34566778889*********999998888888888777766666666433344445555555555544256667788999999999999999999888888877777775543332221...112222.1244454433345566666666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       172  (0.0419308); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 932.44
//
Query:       MMETSP1061-20121228|25302_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 2903.76
//
Query:       MMETSP1061-20121228|25336_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 315.31
//
Query:       MMETSP1061-20121228|25337_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   14.8   0.0     0.0075   13.9   0.0    1.4  1  TIGR03096 nitroso_cyanin: nitrosocyanin


Domain annotation for each model (and alignments):
>> TIGR03096  nitroso_cyanin: nitrosocyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.8e-06    0.0075      74     110 ..     354     390 ..     344     401 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.8e-06
    TIGR03096  74 tvenkspisegfsidaygikevikagetktisfkadk 110
                  t+   s + e +siday   ev  + e+kt+ f ad+
  MMETSP1061-20121228|25337_1 354 TICSGSTMGEQLSIDAYLRAEVAESDESKTVIFGADQ 390
                  677789999**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2300.38
//
Query:       MMETSP1061-20121228|25342_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-61  205.7   0.0    1.4e-61  205.5   0.0    1.0  1  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    9.2e-45  150.5   0.0    1.2e-44  150.1   0.0    1.0  1  TIGR01360 aden_kin_iso1: adenylate kinase
      1e-39  134.2   0.0    2.2e-30  103.7   0.0    2.0  2  TIGR01351 adk: adenylate kinases
  ------ inclusion threshold ------
      0.012   13.2   0.0       0.33    8.4   0.0    2.2  2  TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
      0.024   11.7   0.0      0.035   11.2   0.0    1.2  1  TIGR02880 cbbX_cfxQ: CbbX protein
      0.028   12.0   0.1       0.23    9.0   0.0    2.0  2  TIGR00041 DTMP_kinase: thymidylate kinase


Domain annotation for each model (and alignments):
>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.5   0.0   2.1e-64   1.4e-61       1     184 [.      42     230 ..      42     231 .] 0.93

  Alignments for each domain:
  == domain 1    score: 205.5 bits;  conditional E-value: 2.1e-64
    TIGR01359   1 vvfvlGgPGsGkGtqCakiveefk..fvhlsaGdllreeikregseegelieslikeGkivPsevtvellekaikese...eskkflidGfPrneenleaweklidekvevkfvlfldcseevmvkrllkrgqssGrvddnieslkkrletykeetlpvieyfekkn.kvkkidaeksveevfeevekif 184
                  vvfvlG+PG+GkGtqC+++ e+++  + hlsaGdllr+e++    e+ +li+s i+ G+ivPs++tv+lle+a+++ +     +kflidGfPr++en++awe  ++    +kfvl ++c+eev+v rll+r+++sGr+dd ie ++kr++t+ e+t+p+++yf  ++  +++id++k +e+v+e v ++f
  MMETSP1061-20121228|25342_1  42 VVFVLGAPGTGKGTQCQRLEERMEgpWKHLSAGDLLRAERDSGTGEMADLIRSKIQAGEIVPSSITVKLLENAMTKAHaesGVTKFLIDGFPRSHENMQAWEDAMK-IHTIKFVLNFECPEEVLVGRLLERAKESGRSDDKIEVIRKRFKTHVESTVPILDYFGTQGtALHNIDSAKGIEQVYETVVALF 230
                  89*******************98555***************8889*****************************98762223479******************999.66899***************************************************98872589***************9888 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.1   0.0   1.7e-47   1.2e-44       4     183 ..      41     228 ..      39     231 .] 0.90

  Alignments for each domain:
  == domain 1    score: 150.1 bits;  conditional E-value: 1.7e-47
    TIGR01360   4 kiifivGGpGsGkGtqcekivekyG..fthlssGdllreevasgs.ergkklqaimekGelvpldvvldllkeallkalek..skGflidGyprevkqGeefe..kriaeaklvlyldvsedtlvkrllkraetsarvddnektikkrletykkatepvieyyeskg.kllkinaegtvddvflevva 183
                  +++f++G pG+GkGtqc+++ e+    + hls+Gdllr+e  sg+ e +  +++ ++ Ge+vp+ + ++ll++a++ka  +     flidG+pr  ++ + +e   +i   k+vl +++ e+ lv rll+ra+ s+r dd+ + i+kr++t++++t p+++y+ ++g  l++i++ + +++v+ +vva
  MMETSP1061-20121228|25342_1  41 EVVFVLGAPGTGKGTQCQRLEERMEgpWKHLSAGDLLRAERDSGTgEMADLIRSKIQAGEIVPSSITVKLLENAMTKAHAEsgVTKFLIDGFPRSHENMQAWEdaMKIHTIKFVLNFECPEEVLVGRLLERAKESGRSDDKIEVIRKRFKTHVESTVPILDYFGTQGtALHNIDSAKGIEQVYETVVA 228
                  689******************9974359***************9736678899************************988734478********87765555522799*******************************************************999626899************9997 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.7   0.0   3.2e-33   2.2e-30       3     128 ..      44     172 ..      42     176 .. 0.92
   2 !   29.2   0.0   2.1e-10   1.4e-07     158     209 ..     176     228 ..     172     231 .] 0.89

  Alignments for each domain:
  == domain 1    score: 103.7 bits;  conditional E-value: 3.2e-33
    TIGR01351   3 vllGpPGsGKGTqakrlaeklg..lvhistGdllRaevkkk.telgkkakeylekGklvpdeiviklvkerleeeede..ekgfiLDGfPRtleQaeaLdelleelglkldavielkvpdevlverisgRr 128
                   +lG+PG+GKGTq++rl e+++   +h+s+GdllRae  ++ +e++  + + +++G++vp +i++kl+++++++ ++e    +f++DGfPR+ e ++a +++++   ++++ v++++ p+evlv r+ +R 
  MMETSP1061-20121228|25342_1  44 FVLGAPGTGKGTQCQRLEERMEgpWKHLSAGDLLRAERDSGtGEMADLIRSKIQAGEIVPSSITVKLLENAMTKAHAEsgVTKFLIDGFPRSHENMQAWEDAMKI--HTIKFVLNFECPEEVLVGRLLERA 172
                  579******************97789************99956999***************************9887777789******************9874..479*******************95 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 2.1e-10
    TIGR01351 158 qReDDteevvkkRlevYkeqteplieyYkkkgk.lveidaekkieevlkeile 209
                   R+DD+ ev++kR++++ e+t p+++y+ ++g+ l++id+ k ie+v++++ +
  MMETSP1061-20121228|25342_1 176 GRSDDKIEVIRKRFKTHVESTVPILDYFGTQGTaLHNIDSAKGIEQVYETVVA 228
                  59***************************99862667***********99876 PP

>> TIGR02322  phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.026        18       3      26 ..      42      65 ..      40      87 .. 0.88
   2 ?    8.4   0.0   0.00049      0.33     113     150 ..     153     196 ..     135     231 .] 0.65

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.026
    TIGR02322  3 lilvvGpsGaGKDtlldlararla 26
                 +++v+G+ G+GK t  + + +r++
  MMETSP1061-20121228|25342_1 42 VVFVLGAPGTGKGTQCQRLEERME 65
                 799***********9999888876 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00049
    TIGR02322 113 lvvaitaspdvLaqRLaaRgResa......eeieeRLarsaela 150
                   v++ + +++vL  RL++R++es       e i++R + ++e +
  MMETSP1061-20121228|25342_1 153 FVLNFECPEEVLVGRLLERAKESGrsddkiEVIRKRFKTHVEST 196
                  4678999*************997522222245777777777766 PP

>> TIGR02880  cbbX_cfxQ: CbbX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   5.1e-05     0.035      37     103 ..      15      86 ..      12      98 .. 0.71

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 5.1e-05
    TIGR02880  37 iaalllverlrqklglasaapsl...hmsft.gnpgtgkttvalrmakilhr.lgyvrkghlvsvtrddlvg 103
                  +aal++ ++ +q +  a+++ +l    + f  g+pgtgk t  +r+ + +     ++  g+l+ + rd   g
  MMETSP1061-20121228|25342_1  15 TAALIVTHKRKQLAASAAKSTTLpasEVVFVlGAPGTGKGTQCQRLEERMEGpWKHLSAGDLLRAERDSGTG 86 
                  57777777777766666665555111555644*************988766425677888888888876555 PP

>> TIGR00041  DTMP_kinase: thymidylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00033      0.23      10      59 ..      46     101 ..      39     131 .. 0.68
   2 ?    0.9   0.0     0.097        66     131     193 ..     153     223 ..     139     226 .. 0.55

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00033
    TIGR00041  10 EGidGaGKTtqlellkkllke......eglkvlltrEPggtklgekirellltene 59 
                   G  G+GK tq++ l ++++        g  + + r+ g ++++ +ir+ +   + 
  MMETSP1061-20121228|25342_1  46 LGAPGTGKGTQCQRLEERMEGpwkhlsAGDLLRAERDSGTGEMADLIRSKIQAGEI 101
                  5888**************99766433233344567778889999999998544443 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.097
    TIGR00041 131 lvilLdidpevalerlskrgeldreelekldflekvrekyleladke...........kkivvvdaenkveeve 193
                  +v+ ++++ ev + rl +r +   e   + d+ e +r+++   ++               ++ +d  + +e+v 
  MMETSP1061-20121228|25342_1 153 FVLNFECPEEVLVGRLLERAK---ESGRSDDKIEVIRKRFKTHVESTvpildyfgtqgTALHNIDSAKGIEQVY 223
                  566777777777777666666...33333333444444444444421122222333336677777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      173  (0.0421745); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1172.67
//
Query:       MMETSP1061-20121228|25360_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   12.2   0.0      0.023   11.6   0.0    1.2  1  TIGR03465 HpnD: squalene synthase HpnD


Domain annotation for each model (and alignments):
>> TIGR03465  HpnD: squalene synthase HpnD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.5e-06     0.023      61     106 ..     228     273 ..     206     287 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.5e-06
    TIGR03465  61 lyaGapehpvakaLadaarrfklpqedllevidGmemDleqeryed 106
                   + Ga   pv   L++a+ +  + +e +++v+dGm+ +  ++ + +
  MMETSP1061-20121228|25360_1 228 SAGGAEAAPVLDRLRNAMFELGIDRELFDQVVDGMKKEFSGSAASE 273
                  34457779****************************9998876655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1666.36
//
Query:       MMETSP1061-20121228|25359_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-136  453.0   3.7   2.6e-135  449.6   2.5    1.9  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    1.7e-75  252.3   0.1    3.3e-75  251.3   0.1    1.4  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
    1.1e-74  249.4   0.1    2.9e-74  248.1   0.0    1.5  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
    3.2e-72  241.7   0.2    6.4e-72  240.8   0.1    1.3  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    9.7e-67  223.6   0.3    2.1e-66  222.5   0.2    1.5  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    4.4e-65  218.1   0.1    6.4e-65  217.6   0.1    1.2  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    1.3e-61  206.5   1.7    2.7e-61  205.5   1.2    1.5  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
    1.7e-55  186.5   1.2    3.4e-55  185.5   0.8    1.4  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    3.8e-53  178.6   0.3    6.4e-53  177.8   0.2    1.2  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    2.2e-45  153.0   0.0    4.3e-45  152.0   0.0    1.4  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    5.3e-43  145.2   0.0    8.3e-43  144.6   0.0    1.2  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
    2.6e-19   66.7   0.2    4.4e-19   66.0   0.2    1.3  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    7.1e-10   35.5   1.2    7.9e-09   32.1   0.8    1.9  1  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN
    1.8e-05   21.6   1.5    2.7e-05   21.0   0.0    1.8  2  TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating)


Domain annotation for each model (and alignments):
>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  449.6   2.5    9e-138  2.6e-135       1     477 []       7     497 ..       7     497 .. 0.93

  Alignments for each domain:
  == domain 1    score: 449.6 bits;  conditional E-value: 9e-138
    TIGR01722   1 vkhlidGkfvegksdkyipvsnpatnevlakvaeasaeevdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGktledakGdvarGlevvehacsvtslllGetvesvakdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhGdkeavdrllehpdvkavsfvGsvavgeyiyetgsa..hgkrvqalaGaknhmvvlpdadkeaaldalvgaavGaaGqrcmaisaavlvGaake................lveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgykveGyeeGnfvGitllervkpd.mkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsdGaaarkfqheievGqvGvnvpipvplpffsftGwkd..slfGdlhiyGkqGvrfytrlktvtarw 477
                  v  +i G fv   +++y++v npa+++++++va ++a +vd avasa+++f++w+  ++ +ra vl++++al++eh +e+a+li+ e+Gk +++a  dva+G e ve acs++ l +G+t  +v+ +v     r plGvva i pfnfp m+p+w  p+a++ Gn+ vlkpsekvp++    a+l+++aG+pdGv+n+v G +  v+ l++h dv+av+fvGs++v++ + +++ a  + kr  al+Gaknh v l d + + a+ ++  +  G+aGqrcma s+ + v + +e                lv++i+ +a k++ g+g     e+Gp+i +++ +r+ s+i+++ ++Gae+lldGr +k    +eG ++G+t+l++ +p+  k+  ee+fGpvl vl + ++e+a+ + n +p+Gn ++i+t++G+ a  f  +  + ++Gvn+ ipvp   fsf+G  +  s +Gd++i G+  ++f+++   vt++w
  MMETSP1061-20121228|25359_1   7 VDNYICGGFVPPSTNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGNTL-RVSGQVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGTRACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRAlpEPKRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTVDESEErkhgngdsvsvsagdaLVQKIVSAASKIKAGSGP---GEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKK---DEGFWIGPTILKHTNPEeDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNIGIPVPREPFSFGGLYGtrSKYGDMDITGDGAMEFFSNRVKVTSKW 497
                  6789*******************************************************************************************************************97.699**********************************************************************************************************987764479**********************99999999999***********9877654322112222222222222299**********998874...59**********************************95...69**********9998625899************************************************************************8543399************************* PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.3   0.1   1.1e-77   3.3e-75       2     472 ..       8     491 ..       7     498 .. 0.87

  Alignments for each domain:
  == domain 1    score: 251.3 bits;  conditional E-value: 1.1e-77
    TIGR02299   2 khlidGelvasesgetfetlsPadnevlasvakGgaedvdkavkaakkafkkwaelkaaerkklllkladliekhadeiavlesldtGqalrlvrkavaraaenfrffadkaeeakdgetlpvdeflnyt.vrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrn..gadtlkrlslelGGksPvivfddadleraldavvfmifslnGerctassrll.vqe..............siaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdad.nkmriaqeeifGPvltvipfkdeeealelandieyGlagyvwtedvgralrvaaaleaGmiyvnse.nvrdlrtPfGGvkas....GigreGGdysfdfytetk 472
                  + +i G +v+ + +e+++ ++Pad +++++va   a dvd av++akkaf++w++ + ++r+ +l+k   l+++ha+e+a l   + G+ ++   + va++ e  ++      +   g+tl+v   +  t  r p+Gvv+ i P+n Pfm+  w +  al +Gn+vvlkp+e  Plt    a+l ++aglPdGv+n+v+G  +   +alv+h +v+av+fvG++   +++ ++  + ++ kr     G k+ ++ ++d +++ a   ++       G+rc a+s ll v+e              s  + +v+k++  + +i+ G       e+GP+i+++ ++++lsy+e +e++Ga+il  g++ k+      ++G ++ Pt+l +++ ++ +   ee+fGPvl+v+p ++ e+a+++ n   +G a+ ++t + g a   +++  a m+ vn    v   +  fGG   +    G+    Gd +++f+ ++ 
  MMETSP1061-20121228|25359_1   8 DNYICGGFVPPSTNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSL-PQLAVGNTLRVSGQVSCTdRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGT-RACVEALVDHTDVQAVTFVGSSPVAKIVSQRcrALPEPKRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLtVDEseerkhgngdsvsvSAGDALVQKIVSAASKIKAGSG---PGEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKK------DEGFWIGPTILKHTNpEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNIGiPVPREPFSFGGLYGTrskyGDMDITGDGAMEFFSNRV 491
                  57999************************************************************************************************9999976655.5577899999996665552679******************************************************************5.7889**********************9988622456779998877889**************9999999999*********998834441222222222111123467899***********974...5789******************************99887......89*********988735789************************************************************7525666677788864321112555566777777777655 PP

>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.1   0.0   9.8e-77   2.9e-74       1     437 [.      10     456 ..      10     470 .. 0.90

  Alignments for each domain:
  == domain 1    score: 248.1 bits;  conditional E-value: 9.8e-77
    TIGR01804   1 fidGeyveaeagkvleiinPanqeviaevaeatredvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffaGladkleGeiielgipsfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkima..aaaeelkkvtlelGGksPlivfddadlelavdqallanffsaGqvcsnGtrvlvekkik...............ekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeeeeldeGffiePtvfadvt.ddmtivreeifGPvlsvlefeseeevikrandteyGlaagvftadleraervaerlkaGtvwindynls 437
                  +i G++v  ++++ +++inPa+ + i +va +++ dv+ a+a+a++a++ w++ +  +r+ +l +   l++++ +ela+l   + Gk + e+  ad++++ +++e+ + l +   G+++ ++++  +  rr+plGvv+ i ++n+P ++ +w +  al++Gna+vlkPse  Plt    a+l++ aGlP+Gvfn+v+G+ ++  e+lv+h dv+ v++ G+ +  k + +   a  e k+ t   G k+ l+ ++d +++ a+    ++    aGq c + + +l  ++ +               +++++k+v  + kik+G g     e+GP+i  +  d++l+yie + + ga+++  G   +++e   Gf+i Pt++   + ++ +   ee+fGPvlsvl  +s e++++  n   +G aa+++t+    a+   +r++a ++ +n   ++
  MMETSP1061-20121228|25359_1  10 YICGGFVPPSTNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEA-LADVAKGNETVEWACSLPQLAVGNTLRVSGQVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGT-RACVEALVDHTDVQAVTFVGSSPVAKIVSQrcRALPEPKRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTVDESEerkhgngdsvsvsagDALVQKIVSAASKIKAGSG---PGEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKKDE---GFWIGPTILKHTNpEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNIGIPV 456
                  899*****************************************************************************************.9*****************************8888899*********************************************************************.8899*********************9998855677788999987788*************9998877777789******9999886544331111111111122225789999999*******98...578*******************************9988866...********9887634456789************************************************99999988865555 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  240.8   0.1   2.2e-74   6.4e-72      43     496 ..      19     477 ..       8     493 .. 0.88

  Alignments for each domain:
  == domain 1    score: 240.8 bits;  conditional E-value: 2.2e-74
    TIGR01237  43 eteakidsinpadksevvGkvakasvedaeqalqaakkafeewkktdveeraaillkaaailkrrrhelsallvlevGkiyaeadaevaeaidfleyyaremiklakskevlsieGekn.rylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGkdavivdesadieqavaaavtsafGfaGqkcsaasrvvvle...........kvy....devverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaeg.klvlgged.ddskGyfikptifkdvdrk.arlaqeeifGpvvavlrakdfdealeiansteygltGgvisnsrerierakaefevGnlyfnrkitGaivgvqpfGGfkmsGtdskaGGpd 496
                   t++++d inpad s+ +G+va+ +  d ++a+ +akkaf++w    +++raa+l+k  a +++  +el+ l+v e Gk+++ea a+va+  + +e+ a ++ +la  +++l + G+        plGv  +i p+nfp+ + + +   ++v Gn+vvlkp+e+ ++   + ++++++aGlp Gv++ v G+   v e lvdh++++ +tf Gs  v  +i  +  +  p     kr  a  G k+ ++  e+ +++ a+a ++ s  G aGq+c aas ++ ++           +v     d++v+++v a+   k g++     ++gpvid+ s+d+i +yie ++++g +++l g + ++++G++i+pti+k+ +++  +   ee+fGpv++vl ++ +++a++i ns  +g + ++++    + +   + f+   l +n    G  v ++pf    + Gt sk G  d
  MMETSP1061-20121228|25359_1  19 STNEYMDVINPAD-SKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEW-ACSLPQLA-VGNTLRVSGQVScTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGTRACV-EALVDHTDVQAVTFVGSSPVA-KIVSQRCRALPEP---KRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTVDeseerkhgngdSVSvsagDALVQKIVSAASKIKAGSGPG---EMGPVIDRASYDRILSYIEHSEQKGaEILLDGREwKKDEGFWIGPTILKHTNPEeDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNI---GIPVPREPFSFGGLYGTRSKYGDMD 477
                  5899********9.6789***************************************************************************9995.88999**9.778888888865155789*****************999999*******************************************98877.78*****************96.6777777777765...788888899***********************************999876222222222222213344889999999988888887766...9********************998736677665527789***********9986257899****************************************************999995...6679999998888999999999776 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.5   0.2   7.1e-69   2.1e-66       1     427 [.      26     466 ..      26     475 .. 0.89

  Alignments for each domain:
  == domain 1    score: 222.5 bits;  conditional E-value: 7.1e-69
    TIGR01780   1 vvnPatGekigkvpevsveeveeaieaaeealktykeltakerakllrkwyelilenkddlaklltlenGkplkeakgevlyaasyleWfaeeakrvyGdviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsas.tvkkvslelGGn.aPlivfddadldqavegalaskfrnagqtcvcanrly.vhe..............svydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgGdkreekggnffePtvlsdvt.admlvakeetfGPlapvfkfddeeevvalandtevGlaayffskdlakiirvaeelevGlvgvntgl.isevvipfGGv 427
                  v+nPa  ++ig+v+  ++ +v++a+ +a++a++++++ t k+ra +l k++ l+ e+ ++la+l+ +enGk ++ea ++v+ +   +eW +   +   G++++ +  +      ++P+Gv+a+i+P+nfP  +    +  al  G +vv+kP+e+ Pl+    a l +kaG+P+gv+n+v +  ++  + l+++  v+ v+f Gs++v ki+ +++      k    lGG    l+  +d ++d a +++  s    agq c+ a  l+ v+e              s  d +++k++++ +k+k G G      +Gp+i++ + +++ + ie + +kGa+++++G + ++ +g ++ Pt+l + + ++ +  +ee fGP+ +v+  ++ e++v++ n  ++G aa +++ +  +    +  +   ++gvn g+ +  +  +fGG+
  MMETSP1061-20121228|25359_1  26 VINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGNTLRVSG-QVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGT-RACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRAlPEPKRCTALGGAkNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLtVDEseerkhgngdsvsvSAGDALVQKIVSAASKIKAGSGPG---EMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKKDEGFWIGPTILKHTNpEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNIGIpVPREPFSFGGL 466
                  78***************************************************************************************************98754.5567789****************9988999999****************************************995.677899***********************9996523345566777751567779**********9998888889******99876333222222222221211346999***************965...58******************************999*************99752678999***************************************999999999************9345677999997 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  217.6   0.1   2.2e-67   6.4e-65      13     442 ..      22     465 ..       9     473 .. 0.90

  Alignments for each domain:
  == domain 1    score: 217.6 bits;  conditional E-value: 2.2e-67
    TIGR03240  13 eslesldpvtqevlwqgkaasaaqvekavkaarkafpawarlsleeriavvkrfaelleeekeelaeviaketgkplweartevasmvakvaisikayeertGekeseladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqGaretGkalaaeedidGllftGssntGallhrqlagrpekilalelGG.nnplvveevkdidaavhlivqsafisaGqrctcarrllvkdg.ae.............GdallerlvevaerltvgkydaepqpflGavisekaakellaaqekllalggksllelkqleeeaal.ltpgiidvtev..aevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGllsddrelydkflleiraGivnwnkpltGassaapfGG 442
                  e ++ ++p++++++ + + + a +v++av++a+kafp+w+++++++r+av+ +f +l++e+++elae+i +e gk + ea ++va   + v+ +    +   G++    ++ ++  r  p Gv+a + p+nfp  +p   +  al+ Gn+vv+kpse  pl+ +   +l++kaGlp+Gv+n+vqG+r   +al++++d+  + f Gss   +++ ++    pe      lGG  n lv  e  ++d+a+++i  s    aGqrc  a  ll  d+ +e             Gdal++++v  a+++++g+        +G+vi   + +++l+  e+ +++g++ ll+ ++ ++++++ + p+i+  t+   +++  ee+fgp+l+vl +++ ++a+++ n+  fG aa + + +  + d f+++ ra ++  n  +        fGG
  MMETSP1061-20121228|25359_1  22 EYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGNTLRVSGQVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGTRACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRALPEPKRCTALGGaKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTVDEsEErkhgngdsvsvsaGDALVQKIVSAASKIKAGSGPG----EMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKKDEGFwIGPTILKHTNPeeDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVNIGIPVPREPFSFGG 465
                  567789****************************************************************************************999999**************************************99999**************************************************************************999999888888888358899999999**********9999*********9998643312122233222333338899999999999999886544....49***********************************9998579*******972234679***************************************************99988877766666666666 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.5   1.2   9.3e-64   2.7e-61       2     440 ..       8     451 ..       7     493 .. 0.86

  Alignments for each domain:
  == domain 1    score: 205.5 bits;  conditional E-value: 9.3e-64
    TIGR03216   2 knfidGafv..esektfedispvdgkviaevaeagkeevdaavkaaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvke.vslelGG.knaaivfadadldaavegvlrsaflntGqvclgtervy.v....er..........pifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtgl.pdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwtedlsrahrvakklevGvvwvn 440
                   n+i G fv  ++++ ++ i+p+d+k+i++va +++ +vd+av++a++a+ + w + ++++ra++l+k    +++ ++e+ +  v + Gk  + a   d+++g         + + +  ++++++   G ++     r plGvv+ i p+n+p+++  w v  al +Gn+vv+kpse+ p t    a++++++G+p+Gv+n+v+G  + +  e l+ h dv+a+tf G +   + + + +     +     lGG kn  + + d+++d a + ++ s    +Gq c+++  +  v    er             d +v+++ ++a k+k G       e+Gp+i ++  d++lsy +++ ++Ga+++  G       +++eG+++ pti+    p++++ + ee+fGpv  v p  s e++++  n++ +G aas++t++  +a   ++++ + +  vn
  MMETSP1061-20121228|25359_1   8 DNYICGGFVppSTNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPS-WSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEA-LADVAKGNETVEWACSLPQLAVGNTLRVS---G-QVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQG--TRACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRALPEPkRCTALGGaKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLtVdeseERkhgngdsvsvSAGDALVQKIVSAASKIKAGSGP---GEMGPVIDRASYDRILSYIEHSEQKGAEILLDGR----EWKKDEGFWIGPTILKHTnPEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVN 451
                  69*******97788888999*****************************987.*************************************88766.57*******99999998888888877764...4.333456789****************************************************************96..67899******************9998887766443332134566664999999****************9999*****987554322222223111111111145578888888888888888765...48****************************9996....45799*********986527999**********************************************999999999988887 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  185.5   0.8   1.2e-57   3.4e-55      14     432 ..      20     451 ..       8     480 .. 0.84

  Alignments for each domain:
  == domain 1    score: 185.5 bits;  conditional E-value: 1.2e-57
    TIGR03374  14 egekqavynpatgevileiaeasaeqvdaavraadaafaewgqttpkaraelllkladaieenaevfaklesrncgkplhavlndeipaivdvfrffagaarclsglaageyl..eghtsmi.rrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaela.kdilpagvvnvlfgrgktvgdaltghekvrmvsltgsiatgehilahta...asikrthmelggkapvivfddadidavvegvrtfgfynagqdctaacriya.......qr........giydelveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitggekvkgkgyyfaptllagak.qddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvn 432
                    e + v npa  + i  +a + a +vd av +a++af  w   t k ra +l+k+   ++e a+++a+l  ++ gk +  +l d       v       a  l  la g+ l   g+ s   rrdp+gvva+i p+n+p+m+  w +  al  gn+vvlkpse+ plt  + a+l  k  lp gv n++ g  + v +al  h  v+ v++ gs     +i+++ +   +  kr     g k  ++ ++d+++d  +  +       agq c aa  + +       ++        +  d+lv+k+ +a + +k g+      e+gp++  a  +r+ +++e++   +   ++ g e +k +g++  pt+l  ++ ++d+ + +evfgpv+s+      eq v+  n+  +g a+s++t   g a  +++r++     vn
  MMETSP1061-20121228|25359_1  20 TNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETV-----EWACSLPQLAVGNTLrvSGQVSCTdRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFqKAGLPDGVFNMVQGTRACV-EALVDHTDVQAVTFVGSSPVA-KIVSQRCralPEPKRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTvdeseerKHgngdsvsvSAGDALVQKIVSAASKIKAGSGP---GEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKKDEGFWIGPTILKHTNpEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVN 451
                  567889************************************************************************999888855443333.....44677999999998733588776449**************************************************9972567***********87766.89***************8765.566554401155688887777899999********9999997666678*******9987642222221122222221134588999999999999999864...689***********************9999*******************9876378999********************************************999998877666666 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  177.8   0.2   2.2e-55   6.4e-53      51     487 ..      22     474 ..      11     477 .. 0.83

  Alignments for each domain:
  == domain 1    score: 177.8 bits;  conditional E-value: 2.2e-55
    TIGR01238  51 eaqpvknpadrkdivGqvseadaaevqeavdsavaafaewsatdakeraailerladlleshmpelvallvreaGktlsnaiaevreavdflryyakqvedvldeesaka...........lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaGvpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGqnamivdstalaeqvvadvlasafdsaGqrcsalrvlcvqedvadr......vltlikG.amdelkvgkpirltt.....dvGpvidaeakqnllahiekmkakakkvaqvkleddvesekgtfvaptlfelddlde...lkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvnrnlvGavvGvqpfGGeGlsGtGpkaG 487
                  e   v npad k  +G+v  + a +v++av sa +af+ ws+   k+raa+l ++  l+++h  el  l+v+e Gk + +a+a+v +  + +++ +   +  +++    +           lG+v +i p+nfp+ + +  +  al+ Gn+v+ kp+e+ +l   +a +l+q+aG+p gv +++ G  +    al +++ ++ v f Gs+ va+ + +      +++    a  G +n ++       +   ad+  s    aGqrc a  vl+  ++  +r       +++  G a+ +  v+   + ++     ++Gpvid  + +++l++ie+ ++k+ ++    +e   + ++g ++ pt+++  + +e   l++evfGpvl v+       ++ vd  n++ +g +  +++   +   + ++r ++  + vn   +G  v  +pf   Gl Gt  k G
  MMETSP1061-20121228|25359_1  22 EYMDVINPADSK-TIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGNTLRVSgqvsctdrrdpLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGTRAC-VEALVDHTDVQAVTFVGSSPVAKIVSQRCRALPEPK-RCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLTVDESEERkhgngdSVSVSAGdALVQKIVSAASKIKAgsgpgEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREW--KKDEGFWIGPTILKHTNPEEdktLSEEVFGPVLSVLPVS--SWEQAVDIENSNPFGNAASIYTTHGGNADWFTSRFRASMLGVN---IGIPVPREPFSFGGLYGTRSKYG 474
                  566799****87.58*********************************************************************9755555554444333333333222234447778888******************************************************************995.579**********************99876655555.889999999**9999999999*********999**********99877666554222222233333324444455555544432222289******************999887665433333..4456789*****988765543349***********9765..567899999*********************************9...8999**************99987 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.0   0.0   1.5e-47   4.3e-45      15     411 ..      20     433 ..      11     489 .. 0.83

  Alignments for each domain:
  == domain 1    score: 152.0 bits;  conditional E-value: 1.5e-47
    TIGR03250  15 rdavievrepydgevvgtvpkasvedvrralevaaa.yrs..kltryerskileraaellaarkeeisdlitlesGlskkdslyevgrvadvlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiGkliaakagy....kravlelGG.ndplivledadldraadlavkGsyknsGqrctavkril.vqe..............svadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarlllg....nkrdGalyaptvldrvdpel.alvreetfGpvspvirfkdiddairisnstayglssgvctnrl 411
                  +++ ++v +p d++++g v ++++ dv  a++ a++ + s  + t  +r+++l++  +l++++ +e+++li  e G    ++l +v +  + ++ a +      g+++      +         r+pl gv++ai pfn p+   +  v  a+   n vvlkpsekvpl+  + adl+++aGlp+ ++++v G+ r+  ++l+ +  v+ vtf G+ ++ k ++++       kr    lGG  + l+ led ++d aa          +Gqrc a   +l v+e              s  d++++ +v  + ++k G       ++G vid a+   + + +e++ ++Ga++ll+    +k +G    pt+l++ +pe  + + ee fGpv  v+ +++ ++a+ i ns  +g ++++ t + 
  MMETSP1061-20121228|25359_1  20 TNEYMDVINPADSKTIGRVALSAACDVDDAVASAKKaFPSwsSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGNTLRVSGQVSC-----TDRRDPL-GVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGT-RACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRAlpepKR-CTALGGaKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLtVDEseerkhgngdsvsvSAGDALVQKIVSAASKIKAGSG---PGEMGPVIDRASYDRILSYIEHSEQKGAEILLDgrewKKDEGFWIGPTILKHTNPEEdKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHG 433
                  67889*****************99999999998875254411445579***********************************************999887777777655444443.....4457998.7************999999999******************************************7.677899***********************99754233255.5567762578999*******88765555566789******999884343222233333322113346778888888888888864...579***************************98633334678999*********9986257899*******************************9998765 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.6   0.0   2.8e-45   8.3e-43      43     452 ..      19     428 ..       6     447 .. 0.81

  Alignments for each domain:
  == domain 1    score: 144.6 bits;  conditional E-value: 2.8e-45
    TIGR01236  43 ksnelievvaPadhqaklakltnateedvkkaveaaldakkeWselpfadraaiflkaadllsgkyreeilaatmlgqsktvyqaeidavaelidffrfnvkyarelleqqPsvsapgelnkveyrpleGfvaaisPfnftaiaanlagaPal.mGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGkdfvlvhpsadveevvaatirgafeyqGqkcsaasrly.vpkslwkelk..eellaelkkvkvgdv.........ddlssfmgavideksfakivkviekakkdpeeleilaGGkyddskGyfvePtvveskdPke.klmkeeifGPvltvyvydddkykeilevvdstskyaltGav 452
                  ++ne ++v +Pad  + ++++  +   dv +av +a++a   Ws+  +++raa+++k   l+  ++ +e++  ++ +++k++ +a  d va   + + +     +  ++      ++g++  ++ r   G vaai Pfnf  +    +   al mGn+vv kPs+ + l+      ++++aGlP gv n+v +  + v+ + + + d+ a++f Gs +v     k v+++     +  r +   G k+  ++ +  +v+ ++a +  +     Gq+c aas l  v +s  ++    +++  ++ +  v ++         +   + mg+vid+ s+++i ++ie++ ++ +e  +l G ++ + +G+++ Pt+++  +P+e k+++ee+fGPvl+v   + + +++ +++ +++  ++ + ++
  MMETSP1061-20121228|25359_1  19 STNEYMDVINPADS-KTIGRVALSAACDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALV-QEHAQELAELIVQENGKNITEALAD-VAKGNETVEWACSLPQLAVGNT--LRVSGQVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALvMGNAVVLKPSEKVPLTMRYAADLFQKAGLPDGVFNMVQGTRACVE-ALVDHTDVQAVTFVGSSPVA----KIVSQRCRALPEPKRCTALGGAKNHLVALEDCEVDGAAADITVSFAGCAGQRCMAASVLLtVDESEERKHGngDSVSVSAGDALVQKIvsaaskikaGSGPGEMGPVIDRASYDRILSYIEHSEQKGAE-ILLDGREWKKDEGFWIGPTILKHTNPEEdKTLSEEVFGPVLSVL--PVSSWEQAVDI-ENSNPFGNAASI 428
                  689999*****986.579***************************************87766.5677899999999************.9999999999998876555544..6899*********999***********877655444445449***************9999*******************976665.5567999*********9975....6778888888888899999999*************9998877777789*********9872445544433211222222222222222444555554555678*********************98843.356677899****************9752799**********85..77889998885.555566655555 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.0   0.2   1.5e-21   4.4e-19       2     431 ..       8     438 ..       7     449 .. 0.81

  Alignments for each domain:
  == domain 1    score: 66.0 bits;  conditional E-value: 1.5e-21
    TIGR02278   2 qsylsgewetgages.vevadaitGevlarvs.seGldlaaavayarevGgkalraltfheraaklkalakylserkeelyalaat.tGatrrdnavdidGgigtlftyaskgrrelPdadlliedelealskdgsfqgrhiltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivGs...vgdlldhldsrdvvaftGsaataeklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalv.......eavlealkarl.akvklGdPr....eedvklGplvsveqredveaavaallaagaevrlgdpeeld..GaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtadpevarq 431
                  + y++g ++ ++++  ++v + ++ + + rv+ s+  d+ +ava a++   ++    t+++raa l ++ + ++e+ +el +l  +  G +  ++  d+  g  t+   +s     lP+   l+ ++++ +s + s + r    p  Gv   i  fnfP    +  +  a++ G  +++kP+       +    l++++g lP+G ++++ G+   v  l+dh d +  v+f Gs   a+ + ++   l +  r +a   + n  v  ed      e+d  + +i   ++  aGq+c a   +l   + +       ++v+ +  + l +k++    +    +   ++Gp++++   + +   +++  ++gae+ l ++e  +  G ++ Pt+l+ ++pe d+  + e fGPv ++l+ ++ ++av +        +as+ t+    a+ 
  MMETSP1061-20121228|25359_1   8 DNYICGGFVPPSTNEyMDVINPADSKTIGRVAlSAACDVDDAVASAKK-AFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQeNGKNITEALADVAKGNETVEWACS-----LPQ---LAVGNTLRVSGQVSCTDRR--DP-LGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPLTMRYAADLFQKAG-LPDGVFNMVQGTracVEALVDHTDVQ-AVTFVGSSPVAKIVSQRCRALPEPKRCTALGGAKNHLVALEDC-----EVDGAAADITVSFAGCAGQRCMAASVLLTVDESEerkhgngDSVSVSAGDALvQKIVSAASKikagSGPGEMGPVIDRASYDRILSYIEHSEQKGAEILLDGREWKKdeGFWIGPTILKHTNPEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENSNPFGNAASIYTTHGGNADW 438
                  5799999999887665999999999999999758899*******9875.6799999*************************98765278899999*****99999865554.....665...3457888889888888775..45.588889********999999999************9988766666666666655.7*********9633377899999987.699*********9999999999999999999999999877776.....68999999***************998886544331112222456544434333666655443111133468*****************************988754335******************************************99888878888888877666665 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.8   2.7e-11   7.9e-09      84     466 ..      44     419 ..      38     453 .. 0.70

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.7e-11
    TIGR02288  84 vdtdalleaakkalkgwrdaGararvgvcleilqrlnkrslelahavmhttGqafmmafqaGGphaqdrGleavayayremsripetavwekpqGkkdplklekrfeivprGialvigcstfptwntypGlfaslatGnavlvkphpgailplaltvkvarevlaeaGfdpnlvalaaeeaeeevaqrlaldpavrivdftGsnafGewleqnar...qaqvytekaGvntviiestd.dlkavlrnlafslslysGqmctttqailvprdGirtdegrksydevaadlaaa.idkllgddarava.....llGaiqs....edtvariaearalG.evlldskklehpefpdarvrtplllkv.daadeaayaeerfGpiafvvavddaahavelarr 466
                  +d d  +++akka ++w     + r++v ++    +++++ ela+ +++  G+    a+         +G e+v +a       p+ av +  +     +  + r +  p G+   i    fp       +  +l  Gnav++kp ++    + lt++ a +++ +aG+   +  ++  +      ++l  + +v+ v f Gs+   + + q+ r   + +  t + G  + ++   d ++ + +++++ s++  +Gq c ++  +l   +  + ++g+   d v+ + + a ++k+++  ++  a      +G + +    + +++ i++++++G e+lld ++ ++ e  +     p +lk  +  ++++++ee+fGp+  v+ v + ++av++ + 
  MMETSP1061-20121228|25359_1  44 CDVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALAD-----VAKGNETVEWACSL----PQLAVGNTLRVSG-QVSCTDRRD--PLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEK----VPLTMRYAADLFQKAGLPDGVFNMVQGT--RACVEALVDHTDVQAVTFVGSSPVAKIVSQRCRalpEPKRCTALGGAKNHLVALEDcEVDGAAADITVSFAGCAGQRCMAASVLLTVDESEERKHGN--GDSVSVSAGDAlVQKIVSAASKIKAgsgpgEMGPVIDrasyDRILSYIEHSEQKGaEILLDGREWKKDE--GFW-IGPTILKHtNPEEDKTLSEEVFGPVLSVLPVSSWEQAVDIENS 419
                  7888888888888888888888888888888888888888888888888888888777642.....23577777776543....3333333222211.122333322..4455555555566666666667789***********997....467899***********76666666554..78899**************************99333357899999997777765554899*******************998877655554444443..344444444432455655555444411222344555501115566668999999999999999987764..444.4666666505567789*********************998765 PP

>> TIGR02518  EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   9.3e-08   2.7e-05       9     195 ..      45     227 ..      39     237 .. 0.79
   2 ?   -1.5   0.2      0.63   1.9e+02     166     225 ..     284     343 ..     267     350 .. 0.67

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 9.3e-08
    TIGR02518   9 evrnlirsakvaqkklaalsqeqidkivkaivdaaeenavklakmaneetGfGkvedkvlknklaakivydsikdmktvG.ileedkekkvievavpvGvvaglvpstnptstaiyktlisikarnaivlsphpaakkciietvklirkaaekaGapegiiasltvptiegtnelmknkdtslilatG 195
                  +v + + sak+a    ++ + +q   ++       +e+a++la+  ++e G  ++e      k   ++ + +     +vG  l+   +   ++   p+Gvva++vp   p    ++   i++  +na+vl p  +       t++  ++  +kaG p+g+  +++  t  + + l+ + d+  +   G
  MMETSP1061-20121228|25359_1  45 DVDDAVASAKKAFPSWSSRTIKQRAAVLMKFHALVQEHAQELAELIVQENGKNITEALADVAKGNETVEWACSLPQLAVGnTLRVSGQVSCTDRRDPLGVVAAIVPFNFPFMVPMWTVPIALVMGNAVVLKPSEKVPL----TMRYAADLFQKAGLPDGVFNMVQ-GTRACVEALVDHTDVQAVTFVG 227
                  6778899999999999999999999**************************99998766555555666677766777777356677777899999***********************************99765554....55666666677899999887654.5566677777777776665555 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.63
    TIGR02518 166 giiasltvptiegtnelmknkdtslilatGGeamvkaayss.GkpaiGvGpGngpayieks 225
                    +a+   +t++ ++e    +  s+ + + G+a+v+   s+  k   G GpG+    i+++
  MMETSP1061-20121228|25359_1 284 RCMAASVLLTVDESEERKHGNGDSVSV-SAGDALVQKIVSAaSKIKAGSGPGEMGPVIDRA 343
                  445555667787777765544555555.567788877666515778899999988888886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.67u 0.18s 00:00:00.85 Elapsed: 00:00:00.47
# Mc/sec: 1541.75
//
Query:       MMETSP1061-20121228|25381_1  [L=43]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (43 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 270.26
//
Query:       MMETSP1061-20121228|25384_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-11   39.8   0.1    7.8e-11   39.8   0.1    2.4  3  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.5e-07   28.0   0.6    1.5e-07   28.0   0.4    2.3  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.1   3.8e-14   7.8e-11       1     110 [.     100     202 ..     100     225 .. 0.70
   2 ?   -7.6   5.9         2   4.1e+03      35      83 ..     344     390 ..     327     410 .. 0.72
   3 ?   -3.5   0.1      0.55   1.1e+03      35      49 ..     626     640 ..     624     642 .. 0.83

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 3.8e-14
    TIGR02349   1 dYYeiLgvs..kdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfegfeasefgdigdifeeffgggggsgrr..r 110
                  dYY++L ++   + + +++kkAYrk   kyHPD++  + e ++ f +++ A+e Ls   ++ +YD  ++  ++++  + +++ ++       d+ ++f+ +f++++ +++r  +
  MMETSP1061-20121228|25384_1 100 DYYKVLQLPclPSVTPDDVKKAYRKSCLKYHPDKSG-RGEEDAVFLKVKAAFETLST--QKIAYDS-TEMPFNDSIPS-DNKIAK------HDFFELFRPVFDRNMHFDSRllP 202
                  9*****9983358899******************99.99999*************96..5789**9.56666664332.333322......34445566666655554444342 PP

  == domain 2    score: -7.6 bits;  conditional E-value: 2
    TIGR02349  35 gekeaeekfkeineAyevLsdeekraqYDqfghagleggaggggagfeg 83 
                  ++k+aee  k+   A +  ++e+kr++ +++++++ +++  ++++ f++
  MMETSP1061-20121228|25384_1 344 DKKKAEEDAKRA--AEQKVEEEKKRKAEEKMAKEQEKKKLRKAKQAFKK 390
                  466777777764..45567899999999999999988877666655554 PP

  == domain 3    score: -3.5 bits;  conditional E-value: 0.55
    TIGR02349  35 gekeaeekfkeineA 49 
                   +ke+ ++fkei +A
  MMETSP1061-20121228|25384_1 626 SKKECVARFKEIRNA 640
                  4789999*****999 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.4   7.4e-11   1.5e-07       3     116 ..     100     217 ..      98     280 .. 0.73
   2 ?  -16.5  14.5         2   4.1e+03     326     461 ..     348     495 ..     264     531 .. 0.54

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 7.4e-11
    TIGR03835   3 DyyevLgid..rDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGh...DGvDreddldfdadvfdsffeeieksdefddlt..dddkkskkkkkkkkk 116
                  Dyy vL++   +    +++kka+rk   kyhPD+    + + +f  +  a++ Ls    +  yD       D +  +++++ + d f+ f    ++   fd      +++++  k+ +++k
  MMETSP1061-20121228|25384_1 100 DYYKVLQLPclPSVTPDDVKKAYRKSCLKYHPDKSGRGEEDAVFLKVKAAFETLSTQ--KIAYDSTEMpfnDSIPSDNKIA-KHDFFELFRPVFDRNMHFDSRLlpSNQNNNGGKRNNRRK 217
                  9******964478999***************************************75..5566654321125555555554.556666666666677777663233333333344444444 PP

  == domain 2    score: -16.5 bits;  conditional E-value: 2
    TIGR03835 326 veptsevistvsveatdqlkpkevdqiqeelk.................ktkeieveelptkkadlv.eiev..ddleelkfelveknqekePekavenaatdyqldeatesnidwykqedpkd....ledlvqdqatleiteedqiseekveeetsves 461
                   e +++  ++  ve +++ k +e+                         k  ++++eel +k+  l+ ei++   +l+ lk   ++    ++P + v +  +     + tes  ++    d +      +     + t +    +  s+e+++  + + s
  MMETSP1061-20121228|25384_1 348 AEEDAKRAAEQKVEEEKKRKAEEK-------MakeqekkklrkakqafkKYVAAALEELGEKEYALEdEIDLicTELDRLKLTKLNSLLDSKPAAGVVSIVK-----KRTESIKNGLDGDDEEVdnskCDADSTSKPTANGSLTNGHSKEQTKTAPPTTS 495
                  233333344444444444333333.......03333334577777777677788888888887776534554225566666666666667777777666555.....44444444443333222001133333333444444445555555555544444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       626  (0.152608); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.50
# Mc/sec: 1702.66
//
Query:       MMETSP1061-20121228|25388_1  [L=1365]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1365 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       499  (0.121648); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.10u 0.15s 00:00:01.25 Elapsed: 00:00:00.83
# Mc/sec: 2170.66
//
Query:       MMETSP1061-20121228|25418_1  [L=593]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.2e-48  161.5  31.4    9.7e-48  160.8  21.8    1.3  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8  21.8   2.4e-51   9.7e-48       1     396 []     152     556 ..     152     556 .. 0.91

  Alignments for each domain:
  == domain 1    score: 160.8 bits;  conditional E-value: 2.4e-51
    TIGR00797   1 PailaniaqpllslvDtafvGhlg.pveLaavglgslvlmvliiillglltattalvaqavGagnqqrlsrsasqslllalllgllvavvlif.aakpllslmgadeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilifkfglGivGaAlAtvisqylmflllllyilkakkvdlknegllkpdwealkrllklglplllrvilvsflvtllallvarlG..stalAahqvalqvesllfmlafGlaiAvsalvGqalGa..........gdpkrakevarvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpllfllglvtglglkglw 396
                  P+i+ +++ pl++ vD ++v ++g + ++a+ + +++v++ ++ ++ +l + t +lva+++++gn+++ + ++ q+l++++++ l+ + v++f ++  l s++    + + +a+ Yl i+ ++ +  l+sl+ ++++rG+ dtktp+ i+ ++nv n+iLd+ilif + +G+ GaAlAt+ ++ ++++++l +++k k++    +++  p+w++lk+llk g  l lr++++ +++ ++a +  ++    +a Aah+ a+q+ ++   ++  l++ ++++v +a+ +          g  k ak++  + + +g++lg  l+ + il  + ++ + t  +ev ++a+   i+++++q++++l f+ +G+++G+g +  +  +t++++++  l  l+++   +++gl+g+w
  MMETSP1061-20121228|25418_1 152 PVIGNYAIGPLIGAVDLFWVNRMGnALAVAGQAAANQVFSSAFWFVSFLPSVTATLVAKQHAQGNKEATQDAICQALFVGFFIALIGTPVMFFnSNWALSSVLPQGAPAMAYAKPYLMIRAFAFLPSLISLVGFSAFRGILDTKTPVKISAFANVFNAILDPILIFTLAMGVPGAALATLAAELISAMIYLGLLRK-KQLISWGKLFRPPSWASLKPLLKGGAALQLRNLSLNLTFLAVARVTQSIDqsGVAAAAHAMAIQTFQVGGIVLLALSTVAQIMVPNAMVErvdeasqttiGGLKYAKATSNRLMSWGFVLGCALGSLQILLLPAMFKA-TPLQEVRDAAKLPAIIASVLQIINGLVFIGEGIMIGTGSFLQLSLSTLTATLGC-LWALWYFP--PKVGLTGVW 556
                  99**********************999******************************************************999887755555044555556667899***************************************************************************************5.77777779****************************************9954577889**************************877654111111111156678999999***************999999887776.899************************************************999.88888886..8*******9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (593 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 3010.37
//
Query:       MMETSP1061-20121228|25462_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.031   11.7   0.0      0.034   11.6   0.0    1.0  1  TIGR03357 VI_zyme: type VI secretion system lysozyme-related protein


Domain annotation for each model (and alignments):
>> TIGR03357  VI_zyme: type VI secretion system lysozyme-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.3e-06     0.034      33      82 ..      16      68 ..       3      69 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.3e-06
    TIGR03357 33 dLerLLNtRrgsaa.........slpdyGlpDlnslslssaddrariaraieqaIeryE 82
                        tRr++ +         sl++yGl   +  +++ ++ ++ i +a+ + ++++E
  MMETSP1061-20121228|25462_1 16 A------TRRRLTTspssssptpSLLRYGLGGQHWRQFNPESYQELIYQALSKRVSHFE 68
                 3......3333333555555899***********************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 425.96
//
Query:       MMETSP1061-20121228|25517_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 540.53
//
Query:       MMETSP1061-20121228|25508_1  [L=698]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.6  13.0     0.0052   13.9   9.0    1.7  1  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   9.0   1.3e-06    0.0052      21     157 ..     414     552 ..     403     569 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.3e-06
    TIGR00599  21 apldtslRChvCkdffkaPv...ltsCsHtFCslCiRrcLseepkCPlCraedqEskLRknfvveEivesfknlRksllellrvekttkvesedlaapessskkklieeeeakgv.deeseddlrsasssraaakkktadi 157
                   +l++   C +C+d + +     l  C+H F   C+R++L ++  CP+Cr +      R+    ++ +++  + R+   +  +v + + +e++d   +++++++   ee++     +  +   ++   s+ +   ++ ++ 
  MMETSP1061-20121228|25508_1 414 EELEEEHICIICRDEMTVETakrLPGCGHIFHKSCLREWLVQQQTCPTCRGDISAMEARQR--AQDDMDARIQERQEEQDEEQVSQDADDETNDEDQESTAAQISEREEQSNAADgNVRDGSLKVDDDSEETHPSRSVTTK 552
                  56888889******987654233899************************86654444443..355566666678888888888888888888888888877776655544443203333333333444444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (698 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 2489.96
//
Query:       MMETSP1061-20121228|25522_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.11   10.2   2.9      0.059   11.2   0.4    1.7  2  TIGR02209 ftsL_broad: cell division protein FtsL


Domain annotation for each model (and alignments):
>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.4   1.5e-05     0.059       9      57 ..       9      60 ..       6      65 .. 0.80
   2 ?   -1.6   0.1      0.14   5.8e+02      34      42 ..      86      94 ..      73     100 .. 0.44

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.5e-05
    TIGR02209  9 lllvlvsaisvvsvqhqtrqlnselqklqaei...eklqkewndLqlEvael 57
                 l +++++a+ +v++   +r++  e+++ +       ++++e ++L+ E++++
  MMETSP1061-20121228|25522_1  9 LFTLIIVAVAFVYALKLVRRFALEIAQENHDAvtaMDQEEEKRRLKKEKTAN 60
                 6678899************9999998888754111579999*******9976 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.14
    TIGR02209 34 qklqaeiek 42
                 ++ qae+e+
  MMETSP1061-20121228|25522_1 86 TTKQAEREE 94
                 233333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       460  (0.11214); expected 82.0 (0.02)
Passed bias filter:                      282  (0.068747); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 480.82
//
Query:       MMETSP1061-20121228|25521_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 670.94
//
Query:       MMETSP1061-20121228|25547_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 617.52
//
Query:       MMETSP1061-20121228|25554_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-10   37.1   0.0    3.2e-10   36.7   0.0    1.1  1  TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR00472  pheT_bact: phenylalanine--tRNA ligase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   7.7e-14   3.2e-10      47     137 ..      11     107 ..       2     122 .. 0.81

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 7.7e-14
    TIGR00472  47 vvGkvlevekh..PnadkLkvckVdigek.ellqivcgaknveagkkVvvAlegAkLpng....lkIkksklr.GveSeGMlCSleELgleeeklsdgi 137
                  +vGkv+++++     ++ Lk+c+Vd+g++ +++ +v+ a+nv+ g + +vA +g+++ +     +++ k+    G +SeG++C ++ L  e  ++  gi
  MMETSP1061-20121228|25554_1  11 KVGKVESLKESggKGTKALKICQVDVGDNgQTIPVVTVAPNVRLGSRLAVAPVGSTVLDAsgepMEVRKTTVGgGHVSEGIFCDSRMLAWEGGSV--GI 107
                  799999999872246799********98746899**********************999999*********972589******988887777654..44 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|25575_1  [L=813]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (813 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 2682.68
//
Query:       MMETSP1061-20121228|25642_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|25621_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 2259.04
//
Query:       MMETSP1061-20121228|25641_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 809.15
//
Query:       MMETSP1061-20121228|25647_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    7.0   9.9       0.15   10.4   3.0    2.1  2  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.2      0.38   1.6e+03      14      22 ..      13      21 ..      12      27 .. 0.62
   2 ?   10.4   3.0   3.7e-05      0.15       1      28 [.      77     102 ..      77     104 .. 0.83

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.38
    TIGR01409 14 gaaaglgll 22
                 ++++++gl+
  MMETSP1061-20121228|25647_1 13 VVVLATGLV 21
                 567777763 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 3.7e-05
    TIGR01409   1 lsRRdFLkaa.aaagaaaglglllpspar 28 
                  +sRR+ L++a ++a++a++l+   ps ++
  MMETSP1061-20121228|25647_1  77 TSRRSALTKAvTTAAGALVLS---PSASF 102
                  7**********9999999997...45555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1741.00
//
Query:       MMETSP1061-20121228|25663_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|25682_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1996.34
//
Query:       MMETSP1061-20121228|25695_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 2302.48
//
Query:       MMETSP1061-20121228|25731_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 365.97
//
Query:       MMETSP1061-20121228|25733_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.62    7.0  11.5       0.83    6.6   5.9    2.3  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.2   0.1     0.018        74      82     141 ..     342     402 ..     337     415 .. 0.76
   2 ?    6.6   5.9    0.0002      0.83      21      69 ..     415     467 ..     407     478 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.2 bits;  conditional E-value: 0.018
    TIGR00599  82 eEivesfknlRksllellrvekttkv.esedlaapessskkklieeeeakgvdeeseddlr 141
                  +Ei++ f++ +k++lel r  ++++   ++ + + e+  + + +  ++++++d++ + +++
  MMETSP1061-20121228|25733_1 342 KEIIHMFQTRKKTVLELERKSQSQPPiPKQIVFGIEKELQEQGLCCDSMEENDPNGDSSII 402
                  79****************9998877635566677777777777777777777776666655 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0002
    TIGR00599  21 apldtslRChvCkdffka....PvltsCsHtFCslCiRrcLseepkCPlCrae 69 
                  +  ++s  C vC + +++      l  C+H F   C   +L+++  CP Cr e
  MMETSP1061-20121228|25733_1 415 TITEQSCDCPVCCEQLQNyetvVQLPGCGHVFHESCAMVWLKSHNTCPYCRRE 467
                  556899999999775554221156889***********************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.36
# Mc/sec: 1858.85
//
Query:       MMETSP1061-20121228|25748_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00066   15.2   0.0    0.00068   15.1   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein


Domain annotation for each model (and alignments):
>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.7e-07   0.00068     456     513 ..       1      58 [.       1      59 [] 0.94

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.7e-07
    TIGR00956 456 alffallfnafsslleiaslyearpivekhrkyalyhPsadalasilselPvkliesv 513
                  +lf  +lf ++ +++    + ++r i +k+++  +y   ++++a  +s+lP   +  +
  MMETSP1061-20121228|25748_1   1 VLFQGMLFVMLGGMVTAPGFVNERLIYYKQKDANYYGAFSFVFAKAISKLPQTAVDCM 58 
                  69999**********************************************9877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 432.63
//
Query:       MMETSP1061-20121228|25753_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.17
# Mc/sec: 411.50
//
Query:       MMETSP1061-20121228|25754_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|25742_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.11s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1880.84
//
Query:       MMETSP1061-20121228|25773_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1945.62
//
Query:       MMETSP1061-20121228|25783_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1809.53
//
Query:       MMETSP1061-20121228|25800_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 811.73
//
Query:       MMETSP1061-20121228|25802_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|25815_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 555.74
//
Query:       MMETSP1061-20121228|25819_1  [L=836]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.037   11.2   0.1      0.063   10.5   0.1    1.2  1  TIGR00096 TIGR00096: putative S-adenosylmethionine-dependent methyltransferase, YraL family


Domain annotation for each model (and alignments):
>> TIGR00096  TIGR00096: putative S-adenosylmethionine-dependent methyltransferase, YraL family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   1.5e-05     0.063     131     207 ..     296     373 ..     289     388 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.5e-05
    TIGR00096 131 feGFLphKskerkqklkkiaeekrtivfyEavHRlletLedlqavlkeervlvl.kellklheetylgntsqellall 207
                  f  FL+  +++ k+k+++++ + r  vf+ + H     +e+l++v+ e++v v  ++++    + y  ++++++++ +
  MMETSP1061-20121228|25819_1 296 FVPFLQIHKEDDKEKIRTLRRNGRIRVFFTSKHDRDLVVENLKQVAIEMEVTVRdARQIINNADDYDEEVVENAMKKI 373
                  788***999*****************************************9885378888999999999999988766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 3152.65
//
Query:       MMETSP1061-20121228|25831_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|25848_1  [L=447]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (447 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 2107.11
//
Query:       MMETSP1061-20121228|25882_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 1258.61
//
Query:       MMETSP1061-20121228|25909_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-50  167.1   0.0    1.1e-49  166.7   0.0    1.1  1  TIGR02252 DREG-2: HAD hydrolase, REG-2-like, family IA
    1.4e-10   39.1   0.0    2.4e-10   38.4   0.0    1.3  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
    1.4e-08   32.9   0.0    3.5e-08   31.5   0.0    1.7  1  TIGR01428 HAD_type_II: haloacid dehalogenase, type II
    1.3e-06   25.9   0.0      2e-06   25.3   0.0    1.5  1  TIGR02254 YjjG/YfnB: HAD hydrolase, TIGR02254 family
    0.00015   19.2   0.0    0.00036   17.9   0.0    1.6  1  TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial
    0.00033   18.9   0.0       0.56    8.4   0.0    3.2  2  TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
    0.00056   18.0   0.0     0.0011   17.0   0.0    1.6  1  TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
  ------ inclusion threshold ------
      0.013   12.7   0.0      0.023   11.8   0.0    1.3  1  TIGR01458 HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
      0.021   12.6   0.0      0.042   11.7   0.0    1.4  1  TIGR01990 bPGM: beta-phosphoglucomutase
      0.034   12.1   0.0       0.11   10.4   0.0    1.9  2  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA


Domain annotation for each model (and alignments):
>> TIGR02252  DREG-2: HAD hydrolase, REG-2-like, family IA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  166.7   0.0   2.8e-52   1.1e-49       1     202 [.      86     299 ..      86     300 .. 0.96

  Alignments for each domain:
  == domain 1    score: 166.7 bits;  conditional E-value: 2.8e-52
    TIGR02252   1 klitlDvvdTLlalkksvgevYseiaekyGvevkede.leeaFrkafkksseakpelklssglkeeqwWkkvveetfeeag.lsdeeklekifeelyskFataeawkvvedlekllkklreeglklgvvSNfDsrl.rklLealgl.eelfdfvvvSaevgaeKPdpkIFekaleklg.........ikpeevlhiGDslekDvegakaaGlral 202
                  ++it+D+++TL+ ++ ++ e Y  +a k+Gv+  +++  ++aF +a+k++s+ +p+++ + +++ ++wW+ +v ++fe ag ++d+ + e +f+++ys+F +++a+++++d+ ++lk++r++gl  gv+SN+D+r+  ++L  lgl ++ ++f + S+++g+eKPdp+ F  a++  +         ++p++v+hiG++++kD++ga+ +G++ +
  MMETSP1061-20121228|25909_1  86 RMITFDITGTLVSFRGTLEEHYLGAATKHGVKNVDSSqFASAFGRAYKETSKLHPCFGGE-EMTAKDWWRICVLKSFEYAGaTMDDHTSEMVFQRIYSTFGSSNAYEIFPDALPFLKWARRNGLVCGVLSNADERYgDSILPMLGLtHDELQFQCYSKDLGIEKPDPRAFMAAMHTGEplltnteepLHPSNVFHIGNDFHKDFQGARRVGMHVA 299
                  79*****************************9887777*********************9.89999***************99999999**********************************************9558*******8899*************************999**********************************976 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   5.9e-13   2.4e-10       2     202 ..      85     309 ..      84     322 .. 0.77

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 5.9e-13
    TIGR02253   2 ikavfFDlddTLidtsklaeka.....lrevvevlieegleldeeealeeleklikelgsnyekhfdslir..........rlseeaepklvaeaviaylklklaylkvypdvvkvLleLresGyrlgliTdgltekqweklerlgv.rdfFdavivseelgveKPhpkiFkaalkrlg.........vkpeeavmvGDrlekDikGaknlglktvwinrgkskke 202
                  i+ + FD+ +TL++ +++ e++      ++ v+++ +      + +a++e  kl    g++  + +d ++           + + + +  +v++ ++  +    ay +  pd+   L+  r+ G+  g++ ++++++    l  lg+ +d  +    s++lg+eKP+p+ F aa++  +         ++p +   +G   +kD +Ga+++g+   +++r ++ + 
  MMETSP1061-20121228|25909_1  85 IRMITFDITGTLVSFRGTLEEHylgaaTKHGVKNVDSSQFASAFGRAYKETSKLHPCFGGEEMTAKDWWRIcvlksfeyagATMDDHTSEMVFQRIYSTFGSSNAY-EIFPDALPFLKWARRNGLVCGVLSNADERYGDSILPMLGLtHDELQFQCYSKDLGIEKPDPRAFMAAMHTGEplltnteepLHPSNVFHIGNDFHKDFQGARRVGMHVALLDRYQETEL 309
                  9*************9998887611111455556666653446667777777777777777666666655556665555555555555559***************9.9**************************************93455566679*****************975322222333447899999********************99999887764 PP

>> TIGR01428  HAD_type_II: haloacid dehalogenase, type II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   8.6e-11   3.5e-08       1     195 [.      85     306 ..      85     308 .. 0.76

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 8.6e-11
    TIGR01428   1 ikalvFDvyGTLvdvesvveraeellgek........eelsqlwrqkqleysrlrtlmg....aykdfdel.taealkalleelgleleeaaaerlveav...krLepfpdvaagLkkLkerglklviLsNgstatlkslvkkagld.lefdallsadavraYKPapkvYelalealgvk.........peevllvasna.wDlkgAkklGlktvwvnRpge 195
                  i++++FD+ GTLv ++  +e++    + k        ++++    ++++e s+l+   g      kd + +   ++ +++ +++  + +e + +r++++    +  e fpd++  Lk  +++gl   +LsN+++   +s++  +gl+ +e++      +++  KP+p+++  a+ + +           p++v ++   +  D +gA+++G++++ + R +e
  MMETSP1061-20121228|25909_1  85 IRMITFDITGTLVSFRGTLEEHYLGAATKhgvknvdsSQFASAFGRAYKETSKLHPCFGgeemTAKDWWRIcVLKSFEYAGATMDDHTSEMVFQRIYSTFgssNAYEIFPDALPFLKWARRNGLVCGVLSNADERYGDSILPMLGLThDELQFQCYSKDLGIEKPDPRAFMAAMHTGEPLltnteeplhPSNVFHIGNDFhKDFQGARRVGMHVALLDRYQE 306
                  689***********99888765322222223323455566666667788888888776678777788887635789999999999999998999988765222678889************************************862345543444568899*******9988753321223567777999****9999669****************987 PP

>> TIGR02254  YjjG/YfnB: HAD hydrolase, TIGR02254 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0     5e-09     2e-06      79     201 ..     172     306 ..      85     328 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 5e-09
    TIGR02254  79 aDelklnkefleil.eekarllpgAlelleaLkkk.lrlyivtnGvrevqekrlrksgla.pffdrvlvsEdaGiekPdkkiFafaleri.....k....lkkeevlmvGDsleaDikGaanaGldtvwlnpdrk 201
                  + e+ +++ +  +  ++  ++ p Al +l+  +++ l  ++++n  +   +  l  +gl+ + +++   s d GiekPd++ F  a+        +    l+ ++v+ +G++++ D +Ga+ +G++  +l+  ++
  MMETSP1061-20121228|25909_1 172 TSEMVFQRIYSTFGsSNAYEIFPDALPFLKWARRNgLVCGVLSNADERYGDSILPMLGLThDELQFQCYSKDLGIEKPDPRAFMAAMHTGeplltNteepLHPSNVFHIGNDFHKDFQGARRVGMHVALLDRYQE 306
                  3334444555555413556899********9999989999******************9835799999****************998754211111111134567999******************999987665 PP

>> TIGR01449  PGP_bact: phosphoglycolate phosphatase, bacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   8.9e-07   0.00036      68     185 ..     173     302 ..     154     316 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 8.9e-07
    TIGR01449  68 lrklFlrhYeevaee.ltsvfpgveaaleaLrakGlrlglvtnkPealarplLellglak.ylevligGdslaqrkPdPePLllaa...erl......gvepaqmvyvGDs.evDiaaArAAGlpsvllt 185
                      F+r Y     +    +fp +   l+  r++Gl+ g+  n  e     +L++lgl++  l+      +l   kPdP   ++a    e l        +p ++ ++G++ + D + Ar  G+ ++ll 
  MMETSP1061-20121228|25909_1 173 SEMVFQRIYSTFGSSnAYEIFPDALPFLKWARRNGLVCGVLSNADERYGDSILPMLGLTHdELQFQCYSKDLGIEKPDPRAFMAAMhtgEPLltnteePLHPSNVFHIGNDfHKDFQGARRVGMHVALLD 302
                  45678899988765515689**************************************9637999999***********7665443111222111111356778888996637899****9999998864 PP

>> TIGR01549  HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.7   0.0    0.0096       3.9       1      14 [.      87     100 ..      87     113 .. 0.89
   2 !    8.4   0.0    0.0014      0.56      75     149 .]     206     295 ..     181     295 .. 0.67

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0096
    TIGR01549   1 ailfDidGTLvdse 14 
                  +i+fDi GTLv+++
  MMETSP1061-20121228|25909_1  87 MITFDITGTLVSFR 100
                  69*********986 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0014
    TIGR01549  75 agyrlgiiSngslr...aqklllrkledyfelilvsdepg.sKpepeiflaaleslgl..........epevlhvGDn.lsDieaaknag 149
                  +g+  g++Sn+++r   ++   l + +d  ++  +s + g +Kp+p++f aa+ + +            ++v+h+G +  +D+++a+++g
  MMETSP1061-20121228|25909_1 206 NGLVCGVLSNADERygdSILPMLGLTHDELQFQCYSKDLGiEKPDPRAFMAAMHTGEPlltnteeplhPSNVFHIGNDfHKDFQGARRVG 295
                  5566677788777611134455677778888999999*************9986543211111111112577777777777777777765 PP

>> TIGR02009  PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   2.8e-06    0.0011      76     153 ..     178     258 ..      85     261 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 2.8e-06
    TIGR02009  76 nelyrellrltgaevlpgienlleelkkkkiavalgsss..knakaiLaklglt.dlfdavvdasevkegKPaPetFLaaa 153
                  + +y+   + ++ e++p+   +l++++++++  ++ s++  +  + iL  lglt d +++   ++++   KP+P  F+aa 
  MMETSP1061-20121228|25909_1 178 QRIYSTFGSSNAYEIFPDALPFLKWARRNGLVCGVLSNAdeRYGDSILPMLGLThDELQFQCYSKDLGIEKPDPRAFMAAM 258
                  34666666777789***********************99667789********8468*********************996 PP

>> TIGR01458  HAD-SF-IIA-hyp3: HAD hydrolase, TIGR01458 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   5.7e-05     0.023     165     220 ..     234     298 ..     222     306 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 5.7e-05
    TIGR01458 165 aleyatdikaevvGkPskeffkealra.....lG....vepeeavmiGddlvddvGGaqavGmrg 220
                   l++ +  k + + kP++  f  a+++     +     ++p ++  iG+d  +d  Ga++vGm+ 
  MMETSP1061-20121228|25909_1 234 ELQFQCYSKDLGIEKPDPRAFMAAMHTgepllTNteepLHPSNVFHIGNDFHKDFQGARRVGMHV 298
                  689999999999******999999975333321122226788999******************75 PP

>> TIGR01990  bPGM: beta-phosphoglucomutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0    0.0001     0.042      87     154 ..     189     259 ..     161     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.0001
    TIGR01990  87 pedvlpgikelleelkkkkikialasas..knaklvleklelk.dkfdaivdaaevkkgkPdPeiFlaaae 154
                    +++p    +l+ ++++++ +++ s +  + +  +l  l+l+ d++++   ++++   kPdP  F+aa++
  MMETSP1061-20121228|25909_1 189 AYEIFPDALPFLKWARRNGLVCGVLSNAdeRYGDSILPMLGLThDELQFQCYSKDLGIEKPDPRAFMAAMH 259
                  56899*******************9987225689********73589*********************987 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       1.9   7.7e+02       2      20 ..      87     102 ..      86     121 .. 0.67
   2 ?   10.4   0.0   0.00028      0.11      22     139 ..     188     302 ..     180     304 .. 0.69

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 1.9
    TIGR01662   2 lvvlDlDgtLiddvdyvte 20 
                  ++ +D+ gtL+   ++ ++
  MMETSP1061-20121228|25909_1  87 MITFDITGTLV---SFRGT 102
                  7899******9...34444 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00028
    TIGR01662  22 deaelypevidalaelkkeGykvvivtNqsgigrgkesveevsekveslleelgvpidvliacp.hskceyrKpktgmleealkrln........eidakesvvvGDavltDleaakrvGlatvlva 139
                  +  e++p++ + l+ +++ G    +++N +   +++          +s+l  lg+ +d l +   +++  + Kp ++++  a+             + +++++ +G +  +D ++a+rvG++++l++
  MMETSP1061-20121228|25909_1 188 NAYEIFPDALPFLKWARRNGLVCGVLSNAD---ERY---------GDSILPMLGLTHDELQFQCySKDLGIEKPDPRAFMAAMHTGEplltnteePLHPSNVFHIGNDFHKDFQGARRVGMHVALLD 302
                  556667777788888888888888888888...334.........2344444444444444333233778889977777777766544555566789*********9899************88765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 1491.48
//
Query:       MMETSP1061-20121228|25922_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 275.46
//
Query:       MMETSP1061-20121228|25927_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 1458.17
//
Query:       MMETSP1061-20121228|25939_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.48
# Mc/sec: 211.73
//
Query:       MMETSP1061-20121228|25940_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.66
# Mc/sec: 503.96
//
Query:       MMETSP1061-20121228|25962_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.28
# Mc/sec: 278.12
//
Query:       MMETSP1061-20121228|25982_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 763.24
//
Query:       MMETSP1061-20121228|26005_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.31
# Mc/sec: 387.45
//
Query:       MMETSP1061-20121228|26003_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 799.27
//
Query:       MMETSP1061-20121228|26016_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|26013_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-51  170.7  16.7    1.1e-50  170.4  11.6    1.1  1  TIGR00951 2A43: lysosomal Cystine Transporter


Domain annotation for each model (and alignments):
>> TIGR00951  2A43: lysosomal Cystine Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  170.4  11.6   2.8e-54   1.1e-50       2     233 .]     170     406 ..     169     406 .. 0.91

  Alignments for each domain:
  == domain 1    score: 170.4 bits;  conditional E-value: 2.8e-54
    TIGR00951   2 llqilGlvyvvawsisfyPqiilnfkrKsvvglsldfvsLnlvgfsayvifnllllyvskiknefnlvnpksvppvllndvffalhavllclivllqvlayerdnqrvsskaialliva.....llaafatllvavlrkitlLafvtslsyiklavtlvkylpqayfnytrkstegwsignvlldftGGtlslLqlilqsvnendwsafyanpvkvGlgvvsilfdiifivqhfvly 233
                  +  ++G+ y+v wsi fyPq++ln++rKs +gls df  Ln +g+s y+ + + +++  +ik  ++    + ++ v++ndv f++ha++l+++ ++q++ y     +   k ++ l+v+     + ++ +++ +  l+ +t+L +   ls+ k+  tl ky  q++ ny+rkst gw i   +l+ +GG+ls+Lq+ l s++ +d + + +n  k+ lg+ +i+fd +f+ qh++ly
  MMETSP1061-20121228|26013_1 170 ISSVIGYNYFVLWSICFYPQVLLNYRRKSTKGLSNDFAILNFMGWSFYSAYLVSMYFSDEIKTMYQERFSNESSTVQSNDVAFSVHAMILSFVYIVQIVYYGETRCSFHLKPLTWLLVLgmgipSAVVPCLIKLGYLSYSTWLDYFYVLSFFKICCTLTKYSKQVMLNYKRKSTSGWNIWYNFLECSGGSLSMLQITLDSIDMKDITGITGNMAKFALGFATIFFDALFFTQHYILY 406
                  5589***********************************************************9999988889****************************99986666666666655511111344556666777777************************************************************************************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1762.44
//
Query:       MMETSP1061-20121228|26040_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.33
# Mc/sec: 1851.85
//
Query:       MMETSP1061-20121228|26056_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1463.88
//
Query:       MMETSP1061-20121228|26055_1  [L=1255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 4040.15
//
Query:       MMETSP1061-20121228|26070_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 797.21
//
Query:       MMETSP1061-20121228|26064_1  [L=787]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (787 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.26
# Mc/sec: 3995.21
//
Query:       MMETSP1061-20121228|26088_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 353.97
//
Query:       MMETSP1061-20121228|26096_1  [L=703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-32  109.2   0.0    1.6e-31  107.5   0.0    1.8  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
    5.5e-24   82.5   0.0    1.3e-23   81.4   0.0    1.5  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    2.5e-13   47.4   0.0    4.3e-13   46.7   0.0    1.2  1  TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase
    3.4e-13   47.1   0.0    2.3e-12   44.3   0.0    2.0  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase
    3.2e-12   43.9   0.0    1.9e-11   41.4   0.0    2.0  2  TIGR03537 DapC: succinyldiaminopimelate transaminase
      6e-12   42.9   0.0    1.2e-11   42.0   0.0    1.4  1  TIGR01141 hisC: histidinol-phosphate transaminase
    6.7e-12   42.8   0.0    3.6e-11   40.4   0.0    1.9  2  TIGR03542 DAPAT_plant: LL-diaminopimelate aminotransferase
    9.8e-12   42.4   0.0      2e-11   41.4   0.0    1.4  1  TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase
      1e-09   35.6   0.0    9.2e-08   29.2   0.0    2.1  2  TIGR03947 viomycin_VioD: capreomycidine synthase
    1.4e-09   35.4   0.0      7e-09   33.0   0.0    2.0  1  TIGR03539 DapC_actino: succinyldiaminopimelate transaminase
    1.4e-07   28.1   0.0    3.2e-07   26.9   0.0    1.5  1  TIGR03801 asp_4_decarbox: aspartate 4-decarboxylase
  ------ inclusion threshold ------
      0.015   11.8   0.0      0.026   10.9   0.0    1.3  1  TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase


Domain annotation for each model (and alignments):
>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.5   0.0   4.8e-34   1.6e-31      66     371 ..     335     666 ..     304     693 .. 0.76

  Alignments for each domain:
  == domain 1    score: 107.5 bits;  conditional E-value: 4.8e-34
    TIGR01265  66 fngYapsvGvlaareavaeylskeleakleaddvvltsGcsqaielvieal.anaganiLvPrPgfplYetlakalglevrkydllpekdweidldelea...laDek...tvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYdklvfgd.atfvplakla.....skvPvlslggiskrwlv.PGWrlGWlivvdpkgiledt.vlqglkkllqlildp.atlvqgAlpdilektpkeffek...kikvlkenaelvyeelkeipgltcvkPegamyllvklel..elleeikd.....DvdFceklvkEesvillPgsal 371
                    +Y+ s+G+l  r+ +aey++++  +k  + +++lt G+s ai +v++ l a++ + +++P P +p Y++l + lg     y+l  + +w +  +ele+   +a  k    +al +inP+nP+G+v ++  ++ + e+++ ++++++aDEvY++ v+ + a+fv+  k+a     ++  ++s  ++sk+++   G r G++ ++     ++++  + +  +l++ +++   t +    p+  +++ + f e+   + + lke ae + + l++ipg+ cv  egamy +  +e+  ++le  k+     D  +   l++   + ++P+s +
  MMETSP1061-20121228|26096_1 335 TGAYSHSQGILGLRKHIAEYIHQRDGYKSFPGNIFLTNGASTAISMVLQGLlASNRDAVMIPIPQYPIYSALISKLGGRQVGYELDENLNWAVSREELETkfeMAKSKgleVKALAMINPGNPSGNVMTHCDIQTLTEFCNTHGIVLLADEVYQTNVYAEhAEFVSAKKVAmdcnlKNLQLVSFHSTSKGLIGeCGRRGGYMELHHIDPYVQSQlYKLASADLCSGVVGQlMTSLMLRPPEPGTESYELFREEtcgIYNGLKERAERLVTGLNQIPGISCVPAEGAMYAFPSVEVpsKALEAAKEqgttpDNLYALSLLEMTGICVVPASGF 666
                  568*********************************************986268999*****************9999999************99999873223333322279*********************************************9877787777666222225678999********9637999999999998888888644444445555444431233333334444444444555422256789****************************9777652234444333111224445555555556666666555 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   3.7e-26   1.3e-23      68     341 ..     337     629 ..     321     675 .. 0.73

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 3.7e-26
    TIGR01264  68 GyaptvGaleareaiaeyyankradgeleaddvvlasGcshalelaiea.ladaGenvlvPrPGfplyetlakaldievklynlladedweidlkeles......liddktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiyedlvfkg.atflalasls.....sevPilslgGlakrllv.PGWrlGWliihdrkgvlrdvkdGlkklsqrilGpntlvqGalkeilrktPq....ey..fd....gvvsvlesnadlvyealaevvGlkpvkPkGamyllvkiel 341
                   y+ ++G l  r+ iaey + +r   +    ++ l+ G+s a+ ++++  la + + v++P P +p y++l   l+  +  y+l  + +w +  +ele+       +  + kal + nP+nP+G v+++  ++ l  +++ + +++lade+y+  v+ + a+f +  ++       ++ ++s   ++k l+   G r G++ +h        v++ l kl+   l +  + q  +++++ + P+    +y  f     g+ + l++ a+ +   l++++G++ v  +Gamy +  +e+
  MMETSP1061-20121228|26096_1 337 AYSHSQGILGLRKHIAEYIH-QRDGYKSFPGNIFLTNGASTAISMVLQGlLASNRDAVMIPIPQYPIYSALISKLGGRQVGYELDENLNWAVSREELETkfemakSKGLEVKALAMINPGNPSGNVMTHCDIQTLTEFCNTHGIVLLADEVYQTNVYAEhAEFVSAKKVAmdcnlKNLQLVSFHSTSKGLIGeCGRRGGYMELHHIDPY---VQSQLYKLASADLCSGVVGQ-LMTSLMLRPPEpgteSYelFReetcGIYNGLKERAERLVTGLNQIPGISCVPAEGAMYAFPSVEV 629
                  6999***************9.44444555689***************96268999***********************************9998888762221002334579999******************************************98866766554331111156788999******99725777777777655544...44455555554443332222.222333333322221221122222268899*****************************988875 PP

>> TIGR03538  DapC_gpp: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   0.0   1.3e-15   4.3e-13      60     256 ..     337     535 ..     329     558 .. 0.79

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 1.3e-15
    TIGR03538  60 kyPttkGlpelreaiaeWlerrfelpagvdperqvlPvnGtrealfafvqavidraekalvvlPnPfyqiyeGa.allagaepyf.....ln.ctaengfkpdfdavpeevWkrvqllfvcsPgnPtGavlsleelkklleladkydfiiasdecys.elyldeaeaPvGlleaaaelGrddfkrllvfhslskrs.nvPGlrsGf 256
                  +y +++G+  lr+ iae++++r   ++      +++  nG+  a+  + q +++++++a v++P P y iy    + l+g +  +     ln + + +++++ f+  +++   +v+ l +  PgnP+G+v++  ++++l e  + ++ ++ +de y  ++y+ e+++ v   ++a++   +++ +l+ fhs sk      G r G+
  MMETSP1061-20121228|26096_1 337 AYSHSQGILGLRKHIAEYIHQRDGYKS---FPGNIFLTNGASTAISMVLQGLLASNRDA-VMIPIPQYPIYSALiSKLGGRQVGYeldenLNwAVSREELETKFEMAKSK-GLEVKALAMINPGNPSGNVMTHCDIQTLTEFCNTHGIVLLADEVYQtNVYA-EHAEFVSAKKVAMDCNLKNL-QLVSFHSTSKGLiGECGRRGGY 535
                  7999******************87777...6678999****************998876.789********975256777776553222223223455677777765555.55677777889**********************************726777.888999999***99998776.699******9641455666666 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.3   0.0   6.9e-15   2.3e-12      59     357 ..     334     669 ..     305     692 .. 0.73

  Alignments for each domain:
  == domain 1    score: 44.3 bits;  conditional E-value: 6.9e-15
    TIGR03540  59 enhryPsyeGllayrkavadwykkrfgveldpetevlsliGskeGiahlplafv.npGdivlvpdPgyPvykistllaggepyelPlkeendflPdldaipedv.lkka.....kilflnyPnnPtsavadkeffkevvefakeyniivvhdaayseivf.deykalsflevdgakdva....ielhslsktyn.mtGWrigfa...vGnkeliaalgkvks.nvdsGvfqaiqeaaia.....aleeeeevvkelrkvy...kkrrdllvealkki.GldvkkpkatfylW..vkvP.........eGytsae.fakklleeagvvvtpGvgfGes 357
                   +  y  ++G+l +rk +a+++++r g +  p +  l+  G+   i+ +  +++  + d v++p P yP+y+  +   gg+     l e+ ++    ++++++  + k+     k l +  P nP + v ++  ++ + ef++ ++i+++ d+ y+  v+ ++ + +s  +v    ++     + +hs sk      G r g+      +  + + l k+ s ++ sGv   + +  +        e+ e + +e++ +y   k+r + lv +l++i G+++  +++++y +  v+vP         +G+t  + +a +lle +g+ v+p  gfG++
  MMETSP1061-20121228|26096_1 334 GTGAYSHSQGILGLRKHIAEYIHQRDGYKSFPGNIFLT-NGASTAISMVLQGLLaSNRDAVMIPIPQYPIYSALISKLGGRQVGYELDENLNWAVSREELETKFeMAKSkglevKALAMINPGNPSGNVMTHCDIQTLTEFCNTHGIVLLADEVYQTNVYaEHAEFVSAKKVAMDCNLKnlqlVSFHSTSKGLIgECGRRGGYMelhHIDPYVQSQLYKLASaDLCSGVVGQLMTSLMLrppepGTESYELFREETCGIYnglKERAERLVTGLNQIpGISCVPAEGAMYAFpsVEVPskaleaakeQGTTPDNlYALSLLEMTGICVVPASGFGQK 669
                  4567999**********************999877666.5888888888887762678***************999999999999999999998888888765423444111115566677**********************************876661555556655544322221222379******97525677777651113344567889998653799**998766554431222245566677899999*95556999*********999***********98556777433333222344443347789****************85 PP

>> TIGR03537  DapC: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   5.4e-14   1.9e-11      31     218 ..     337     536 ..     325     554 .. 0.80
   2 ?   -0.5   0.0       0.3     1e+02     301     324 ..     645     669 ..     611     688 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 5.4e-14
    TIGR03537  31 qypsvlGekalreaiagylerrfgvkldpdaevlpsaGskeaifhlplafldpeeerkkviygtpgypvyerGalfaggealkvklkkedgflleldaveeai..lr....etkivwinyphnptGaeapasylkevaelareygiilasdecy.aeiysee.kpasvlevgle....n..vlafhslskr.sGmtGyrsgfl 218
                   y    G   lr+ ia+y+++r g k  p  +++ + G+  ai  +   +l   ++r  v+++ p yp+y       gg  +  +l ++ ++ ++ +++e++    +    e k + +  p np+G   +   ++  +e++  +gi+l++de y +++y e+ +  s+ +v+++    n  +++fhs sk   G  G r g++
  MMETSP1061-20121228|26096_1 337 AYSHSQGILGLRKHIAEYIHQRDGYKSFPG-NIFLTNGASTAISMVLQGLLA--SNRDAVMIPIPQYPIYSALISKLGGRQVGYELDENLNWAVSREELETKFemAKskglEVKALAMINPGNPSGNVMTHCDIQTLTEFCNTHGIVLLADEVYqTNVYAEHaEFVSAKKVAMDcnlkNlqLVSFHSTSKGlIGECGRRGGYM 536
                  5778889999****************9996.688889999999887777776..7899*************9999999999999**9999999999988765421111111445556667**********************************5689998753445554444422224226899999996368888888887 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.3
    TIGR03537 301 aksyalrlle.eGivvapGeafgag 324
                  ++ yal lle  Gi v p + fg+ 
  MMETSP1061-20121228|26096_1 645 DNLYALSLLEmTGICVVPASGFGQK 669
                  5679999998469999999999976 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.0   0.0   3.4e-14   1.2e-11      59     185 ..     346     489 ..     332     532 .. 0.79

  Alignments for each domain:
  == domain 1    score: 42.0 bits;  conditional E-value: 3.4e-14
    TIGR01141  59 elkealakylg......veeenillgnGsdelielliraflepg.davlvleptysmYevsakiagaevkevplked.....gqedleavle....aake..kvklvflasPnnPtGnllkreeiekvleev.edalVVv.DeAYie 185
                   l++++a+y+         + ni+l+nG+  +i+++++ +l ++ dav+++ p y +Y+   +  g + + ++l+e+          e++++    a+++  +vk   + +P nP+Gn++++ +i+++ e   ++++V++ De Y  
  MMETSP1061-20121228|26096_1 346 GLRKHIAEYIHqrdgykSFPGNIFLTNGASTAISMVLQGLLASNrDAVMIPIPQYPIYSALISKLGGRQVGYELDENlnwavS---REELETkfemAKSKglEVKALAMINPGNPSGNVMTHCDIQTLTEFCnTHGIVLLaDEVYQT 489
                  678888888877777777789*******************99999*******************************9995542...3333333333444411566677789*******************99558888655999965 PP

>> TIGR03542  DAPAT_plant: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.4   0.0   1.1e-13   3.6e-11      70     223 ..     337     495 ..     317     536 .. 0.79
   2 ?   -0.5   0.0      0.28        97     357     382 ..     651     675 ..     636     693 .. 0.68

  Alignments for each domain:
  == domain 1    score: 40.4 bits;  conditional E-value: 1.1e-13
    TIGR03542  70 GyGpeqGldllreaiaeeeykgr...idpeeifisdGakcdvar.llelfgsdk.tvavqdPvyPvyvd.savlaGragvldddgkykkivylpctkenefiPelpeekkvdiiylCsPnnPtGtvltkeqlkelvdyakendslilfdaayeafisdps 223
                   y   qG+  lr+ iae  ++       p +if+++Ga + ++  l+ l++s++ +v +  P yP+y   +++l Gr    + d++ +  v      e++f  + ++  +v+ + +  P nP G v+t+ +++ l ++ +++++++l d  y++ +  ++
  MMETSP1061-20121228|26096_1 337 AYSHSQGILGLRKHIAEYIHQRDgykSFPGNIFLTNGASTAISMvLQGLLASNRdAVMIPIPQYPIYSAlISKLGGRQVGYELDENLNWAVS-REELETKFEMAKSKGLEVKALAMINPGNPSGNVMTHCDIQTLTEFCNTHGIVLLADEVYQTNVYAEH 495
                  688999**********9988876666779************98725668887753799*********8736788898665554444443333.334467777666666778889999************************************9887665 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.28
    TIGR03542 357 kllkeaevvgtPGsGfGssGeGfvrl 382
                   ll+ + + ++P sGfG+  +G v +
  MMETSP1061-20121228|26096_1 651 SLLEMTGICVVPASGFGQK-KGRVGF 675
                  5888999**********74.333333 PP

>> TIGR01140  L_thr_O3P_dcar: threonine-phosphate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   5.9e-14     2e-11      61     175 ..     361     494 ..     341     525 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 5.9e-14
    TIGR01140  61 ygldaesvlavnGaqeaiql.lprllapkrv..lvlaptyseyaralraagaevvels................dleelaaeleeadllvvvnPnNPtGrllekeellalaerlkarggllvvDEAFidftpae 175
                  y+  + ++ ++nGa  ai + l+ lla +r   +++ p+y  y + +++ g + v ++                ++e ++++  e+++l ++nP NP G+++++ +++ l e ++++g++l+ DE +   + ae
  MMETSP1061-20121228|26096_1 361 YKSFPGNIFLTNGASTAISMvLQGLLASNRDavMIPIPQYPIYSALISKLGGRQVGYEldenlnwavsreeletKFEMAKSKGLEVKALAMINPGNPSGNVMTHCDIQTLTEFCNTHGIVLLADEVYQTNVYAE 494
                  3444899************9555566555542388999*************999999999*******99988776677766669*****************************************998766554 PP

>> TIGR03947  viomycin_VioD: capreomycidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   2.7e-10   9.2e-08      48     192 ..     339     495 ..     337     535 .. 0.82
   2 ?    4.1   0.0     0.011       3.9     289     342 ..     612     676 ..     601     682 .. 0.74

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 2.7e-10
    TIGR03947  48 seslGgeklraaladrlagGda.....ekvlvthGsseaiylvltallrP.Gdevvvvdpayhslselavalgakvrrwplaaerdfrpdlddlr...alvtdr...trlvvvnfPhnPtGasvderelsellelaaesgavllWdaafadlvydae 192
                  s+s+G  +lr+ +a+ +++ d       +++ t G+s ai +vl+ ll    d v++  p y   s+l   lg +   + l+ + ++++  ++l+   ++++++    +++ +  P nP+G  +++ + + l+e  +  g vll d+ ++  vy  +
  MMETSP1061-20121228|26096_1 339 SHSQGILGLRKHIAEYIHQRDGyksfpGNIFLTNGASTAISMVLQGLLASnRDAVMIPIPQYPIYSALISKLGGRQVGYELDENLNWAVSREELEtkfEMAKSKgleVKALAMINPGNPSGNVMTHCDIQTLTEFCNTHGIVLLADEVYQTNVYAEH 495
                  7899**********98766554112225799**************998752799***********************************99999844456666533335666667********************************9988888654 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.011
    TIGR03947 289 vrltvPeGGvaafprf............agladvtdlCerllarhgvlvvPGscfGaadrvrlGfg 342
                  +++ + eG + afp +            +g++  + +   ll+  g+ vvP s fG+ +  r+Gf 
  MMETSP1061-20121228|26096_1 612 ISCVPAEGAMYAFPSVevpskaleaakeQGTTPDNLYALSLLEMTGICVVPASGFGQKK-GRVGFR 676
                  56677778888888777777777775543333333355689***************976.599996 PP

>> TIGR03539  DapC_actino: succinyldiaminopimelate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   2.1e-11     7e-09      49     217 ..     335     523 ..     321     537 .. 0.74

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 2.1e-11
    TIGR03539  49 apgyPqtaGteelreaivdalerrlgvkgldeeavlPviGtkelvallPtllGlgagdtvviPevayPtyevg.arlagae...........avaaddlteldp.........ekvkliwlnsPanPtGrvlsveelrkvvalarergvvvasdecylelgWegeavsvldpev...cggdlegllavhslsk 217
                  + +y + +G   lr+ i++++++r g k+  + +++ + G+  +++++ + l  ++ d+v+iP   yP y+   ++l g +           av+ ++l+   +          +vk + +  P+nP+G+v++  +++++ ++   +g+v+ +de y   ++ ++a  v  ++v   c+ +   l++ hs sk
  MMETSP1061-20121228|26096_1 335 TGAYSHSQGILGLRKHIAEYIHQRDGYKSF-PGNIFLTNGASTAISMVLQGLLASNRDAVMIPIPQYPIYSALiSKLGGRQvgyeldenlnwAVSREELE---TkfemakskgLEVKALAMINPGNPSGNVMTHCDIQTLTEFCNTHGIVLLADEVYQTNVYAEHAEFVSAKKVamdCNLKNLQLVSFHSTSK 523
                  568999**********************76.999***********999888888999*************743033333321111111111123333332...12223334333455566667**************************************99998888888883223334455788899988 PP

>> TIGR03801  asp_4_decarbox: aspartate 4-decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   9.3e-10   3.2e-07     138     289 ..     351     492 ..     336     541 .. 0.74

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 9.3e-10
    TIGR03801 138 vkeyllkelveekkakgefdlfaveGgtaamcyifdslkaneLlkkgDkialllPiftPyleipelerydlevvkikadeakedgkatwqytdkele......kLkdpkikalfvvnPsnPpsvaiseesieklakiveekrpdLmiltDDvygtfvd 289
                  + ey++++  +++ +    ++f ++G+  a++ + + l a    +++D + + +P +  y   + +++   ++v  + de+ +     w ++ +ele      k k  ++kal ++nP nP+++ +++  i++l++  ++    +++l+D+vy t v 
  MMETSP1061-20121228|26096_1 351 IAEYIHQRDGYKSFPG---NIFLTNGASTAISMVLQGLLA----SNRDAVMIPIPQYPIYS--ALISKLGGRQVGYELDENLN-----WAVSREELEtkfemaKSKGLEVKALAMINPGNPSGNVMTHCDIQTLTEFCNT--HGIVLLADEVYQTNVY 492
                  5566666555544333...899999999999988887644....56776666666665554..44566666777777777766.....666655554322222778889*****************************99..67999******99663 PP

>> TIGR00700  GABAtrnsam: 4-aminobutyrate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.6e-05     0.026     213     240 ..     460     488 ..     430     513 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.6e-05
    TIGR00700 213 ivpakelvaavaslckehgivliadev.q 240
                  +v ++  +++++++c+ hgivl+adev q
  MMETSP1061-20121228|26096_1 460 NVMTHCDIQTLTEFCNTHGIVLLADEVyQ 488
                  5666677999****************944 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.48u 0.12s 00:00:00.60 Elapsed: 00:00:00.61
# Mc/sec: 1521.12
//
Query:       MMETSP1061-20121228|26106_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.30
# Mc/sec: 290.38
//
Query:       MMETSP1061-20121228|26114_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2023.83
//
Query:       MMETSP1061-20121228|26148_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 345.69
//
Query:       MMETSP1061-20121228|26163_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 454.63
//
Query:       MMETSP1061-20121228|26169_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 601.28
//
Query:       MMETSP1061-20121228|26171_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2460.65
//
Query:       MMETSP1061-20121228|26197_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|26191_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1275.89
//
Query:       MMETSP1061-20121228|26199_1  [L=633]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-243  807.5   0.0   1.2e-243  807.3   0.0    1.0  1  TIGR02042 sir: sulfite reductase, ferredoxin dependent
   1.1e-138  460.8   0.0     7e-138  458.2   0.0    1.8  1  TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component
    1.6e-20   71.2   0.0    7.6e-14   49.3   0.0    2.1  2  TIGR02435 CobG: precorrin-3B synthase
    3.3e-08   30.7   0.0    8.7e-05   19.5   0.0    2.4  2  TIGR02912 sulfite_red_C: sulfite reductase, subunit C


Domain annotation for each model (and alignments):
>> TIGR02042  sir: sulfite reductase, ferredoxin dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  807.3   0.0  1.1e-246  1.2e-243       2     581 .]      46     628 ..      45     628 .. 0.97

  Alignments for each domain:
  == domain 1    score: 807.3 bits;  conditional E-value: 1.1e-246
    TIGR02042   2 kpetverkrskveilkeksnflreplaeelleeatnlnedavqllkfhgsyqqdnrdergkgqekdysfmlrtknpggkvpnqlyltlddladeygigtlrlttrqafqlhgvlkknlktvistivknlgstlgacgdlnrnvlapaapfkkkaeyefaketadniadllspqsgayyelwldgekvlsae......pdpevvkar.rdnskgtnvadseeplygtqylprkfkvavtvptdnsvdlftqdiglvvvsdekgelegfniyvggglgrthrkeetfarladplgyvpkedilaavkaivvtqrdygdrddrryarlkylisdwgiekfrevveeyfgkkiapvrelpefkykdylgwheqgdgklflglsvdsgrvkdegafqlkkalrevvekykldvrltpnqniilydikpedkraittvlaqagllqpeavdplnrtamacpalplcglaiteaeraipgilkrvrallekvglkdesvvvrltgcpngcarpymaelglvgdapnsyqvwlggspnqtrlarsfvdklkdedlekvleplfvyfkkkrqskesfgdftdrvgfdklrefveey 581
                  kp++  +k sk+eilk++s  l++pl+eel++e+  +++da q++k+hgsyqq nr+++     kdy+fmlr+k+p+g++p+ ly  +ddl+ ++g+g lr+ttrq+fq+hg++k  lktvis+i++   st+gacgd+nrnv++ +apf+ k +ye+a+e+++  a l+ p + a+ elwldgekv +ae      ++ +v +a   d ++g ++   +eplyg++ylprkfk+ vtvp+dns+d++t+dig vv+++ekgelegfn+ vggg+grth+ke+tfar ad +g+vpke+i+  +kai+++qrd+g+rd r  ar+kyl++  gie f   ve+yfgkki+p re+ e+ky+d++gw eqgdgklf gl+vd+grvkdeg+f+lk+++r +v+ky+l++ ++p+q ii+ dikpedk+  +++la+ g++  e vdpl r +macpalplcgla teaer +p+ ++r+r+ll k+g++de++++r+tgcpngcarpymael++vgd+p+syqvwlggsp +tr a +f+ k+k++dle+++ep++  fk++rq  e+fgdf++rvg +++++++e+y
  MMETSP1061-20121228|26199_1  46 KPKAPVKKISKLEILKQESANLLHPLKEELQTESIGISKDAYQIMKYHGSYQQSNREKKK---VKDYQFMLRLKQPAGELPPDLYRLVDDLSANHGQGDLRATTRQCFQIHGIMKGSLKTVISSIMNIGSSTVGACGDVNRNVMTTPAPFVSK-DYEYAREYSKVFAHLFRPMTPAFTELWLDGEKVATAElwgkevEKHKVDEAMtYDSGRGIILDHPTEPLYGDRYLPRKFKIGVTVPGDNSLDIYTNDIGCVVITNEKGELEGFNVMVGGGMGRTHNKETTFARAADHMGFVPKEEIMECLKAILAAQRDHGNRDVRANARMKYLVHTLGIENFATLVESYFGKKIQPWREIQEWKYNDWMGWWEQGDGKLFYGLHVDNGRVKDEGDFRLKSCMRAIVDKYNLPMIMSPTQSIIFKDIKPEDKAGFEAMLAEHGIKPLEEVDPLARLSMACPALPLCGLAQTEAERIMPSYIERMRSLLTKLGMDDEEILMRMTGCPNGCARPYMAELAFVGDGPKSYQVWLGGSPVLTRTAWPFKAKMKNDDLEETMEPILAMFKEQRQEFEAFGDFCHRVGAESIEKYSESY 628
                  7889999*************************************************9887...9************************************************************9977778**********************.************************************943322223334444314678999999999****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************998 PP

>> TIGR02041  CysI: sulfite reductase (NADPH) hemoprotein, beta-component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  458.2   0.0  6.9e-141    7e-138       1     539 [.      58     617 ..      58     618 .. 0.97

  Alignments for each domain:
  == domain 1    score: 458.2 bits;  conditional E-value: 6.9e-141
    TIGR02041   1 erikeesnylrGtlkedlkdeltgglkeddfqlikfhGlyqqddrdlreeraeqklepayalllrvrlpGGvitpkqwlkldklarkyangslrlttrqtfqfhGilkkelkkvikalhsvlldslaaagdvnrnvlctsnpleselhrevyewakkisehllprtrayaeiwldekkvagaee...........................eepilGktylprkfkiavavpplndvdvyandlgfvaiae.deklvGfnvliGGglslehGdkktyprlakvlGfveleellavaeavvttqrdfGnrtdrknarlkytierlGldalkaeverragiklepvrpykfterGdrigwvkgidgrwhltlfiesGrivdeedkklltGlreiakihkGdfritanqnliiaevsekekakieklakkyGlidg.kvtalrknslacvalptcplamaeaerylpdfiakldkilekyGladeeivlrvtGcpnGcarallaeiglvGkapGrynlylGgdregsrlnklykeniteeeilaeldellgryakerkegeefGdfvirag 539
                  e +k+es  l   lke+l+ e + g+++d  q++k+hG+yqq +r+ ++          y+++lr + p G + p+ +  +d+l+ ++++g lr ttrq+fq+hGi+k  lk+vi  + +++  +++a+gdvnrnv++t+ p+ s+ ++ + e++k  ++ + p t a++e+wld++kva+ae                            +ep++G  ylprkfki+v+vp  n +d+y+nd+g v i++ +++l Gfnv++GGg++++h ++ t++r a+ +Gfv++ee+++  +a+++ qrd+Gnr +r+nar+ky ++ lG++++ + ve   g k++p r+++  +  d +gw ++ dg+  + l++++Gr+ de d +l++ +r+i    +  + +++ q +i  ++ +++ka  e++  ++G+    +v  l++ s+ac alp c+la +eaer++p++i+++ ++l+k G++deei++r+tGcpnGcar+++ae+++vG +p  y ++lGg    +r +  +k  ++++++  +++ +l  ++++r+e e fGdf +r g
  MMETSP1061-20121228|26199_1  58 EILKQESANLLHPLKEELQTE-SIGISKDAYQIMKYHGSYQQSNREKKKV-------KDYQFMLRLKQPAGELPPDLYRLVDDLSANHGQGDLRATTRQCFQIHGIMKGSLKTVISSIMNIGSSTVGACGDVNRNVMTTPAPFVSKDYEYAREYSKVFAHLFRPMTPAFTELWLDGEKVATAELwgkevekhkvdeamtydsgrgiildhpTEPLYGDRYLPRKFKIGVTVPGDNSLDIYTNDIGCVVITNeKGELEGFNVMVGGGMGRTHNKETTFARAADHMGFVPKEEIMECLKAILAAQRDHGNRDVRANARMKYLVHTLGIENFATLVESYFGKKIQPWREIQEWKYNDWMGWWEQGDGKLFYGLHVDNGRVKDEGDFRLKSCMRAIVDKYNLPMIMSPTQSIIFKDIKPEDKAGFEAMLAEHGIKPLeEVDPLARLSMACPALPLCGLAQTEAERIMPSYIERMRSLLTKLGMDDEEILMRMTGCPNGCARPYMAELAFVGDGPKSYQVWLGGSPVLTRTAWPFKAKMKNDDLEETMEPILAMFKEQRQEFEAFGDFCHRVG 617
                  56899*************876.679*****************98865443.......3699*************************************************************************************************9999*******************775556688899999*************999*************************************985789*******************************************************************************************************************************************************************************97658999*******************************************************************************************************************************976 PP

>> TIGR02435  CobG: precorrin-3B synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   7.2e-08   7.4e-05      19      96 ..     112     190 ..     107     203 .. 0.96
   2 !   49.3   0.0   7.5e-17   7.6e-14     127     384 ..     270     557 ..     267     560 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 7.2e-08
    TIGR02435  19 lvRvrlvggiLtsaqvigLAelAerlgngiievtaRanlQlRgla.adadalseallaagllaagaaadevrnvevspl 96 
                  + R++ + g L +     + +l   +g+g + +t+R   Q+ g+  ++ + +++++++ g    ga  d  rnv+++p 
  MMETSP1061-20121228|26199_1 112 MLRLKQPAGELPPDLYRLVDDLSANHGQGDLRATTRQCFQIHGIMkGSLKTVISSIMNIGSSTVGACGDVNRNVMTTPA 190
                  89*******************************************99*****************************995 PP

  == domain 2    score: 49.3 bits;  conditional E-value: 7.5e-17
    TIGR02435 127 LgpkfsvalDgGgrltllevtaDvrlkalkegd....gvalalslaGastsarll...........vavapdaavevlvavlrvfvekgr.....aarlrdlldeelvdealeeve....lkllpeaaegeakreavaaaaplGlhpqadagvtlGvglalGrltaaqlaelaelaqalGdg...elrLtpwralLvlgvpeeraaaaqaalaalGlv.isasdprari.aACtGapgCasaladtkadAealaaeleetvd........ltvHlsGCaksCAapgpaaltLvaa 384
                  L++kf++ +   g+  l+  t+D+   ++++ +    g  + + ++G   +++             + v++++  e l a+l    ++g+     +ar+++l +  +++++++ ve    +k++p  +  e+k+     +  +G++ q+d++   G+ +  Gr++ +    l  + +a  d     + + p ++++++++ +e  a  +a+la +G+  +++ dp ar+ +AC+  p C  a+ +   +    ++++ + +         + + ++GC ++CA+p +a+l  v+ 
  MMETSP1061-20121228|26199_1 270 LPRKFKIGVTVPGDNSLDIYTNDIGCVVITNEKgeleG--FNVMVGGGMGRTHNKettfaraadhmGFVPKEEIMECLKAILAAQRDHGNrdvraNARMKYLVHTLGIENFATLVEsyfgKKIQPWREIQEWKY-----NDWMGWWEQGDGKLFYGLHVDNGRVKDEGDFRLKSCMRAIVDKynlPMIMSPTQSIIFKDIKPEDKAGFEAMLAEHGIKpLEEVDPLARLsMACPALPLCGLAQTEAERIMPSYIERMRSLLTklgmddeeILMRMTGCPNGCARPYMAELAFVGD 557
                  88999999988889999999999988777665532332..555555433222211223567777779**********************999*999******************98666556666666665555.....5678**********************98766666666655443212799*****************************857899*****955********9999998888888888888877789999998999******************9996 PP

>> TIGR02912  sulfite_red_C: sulfite reductase, subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.0   8.4e-08   8.7e-05      20      74 ..     110     164 ..      95     175 .. 0.87
   2 !    8.6   0.0   0.00017      0.17     134     166 ..     530     562 ..     492     566 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 8.4e-08
    TIGR02912  20 ktairvrvpggileakylsllrdiaetygngkvhittrqgleipgikfedidevn 74 
                  + ++r++ p g l+  ++ l+ d++ ++g+g++  ttrq ++i gi   +++ v 
  MMETSP1061-20121228|26199_1 110 QFMLRLKQPAGELPPDLYRLVDDLSANHGQGDLRATTRQCFQIHGIMKGSLKTVI 164
                  56899*****************************************988877765 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00017
    TIGR02912 134 dyhlkialtgcpndcikarmadlgilgvtepry 166
                  d  + + +tgcpn c++  ma+l  +g     y
  MMETSP1061-20121228|26199_1 530 DEEILMRMTGCPNGCARPYMAELAFVGDGPKSY 562
                  55667789****************999766655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (633 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.37
# Mc/sec: 2258.08
//
Query:       MMETSP1061-20121228|26216_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-23   81.8   0.0    1.4e-23   81.3   0.0    1.1  1  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    1.1e-22   78.3   0.0    1.6e-22   77.7   0.0    1.2  1  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
      1e-21   75.6   0.0    1.4e-21   75.1   0.0    1.2  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
    1.6e-06   24.0   0.0    2.3e-06   23.4   0.0    1.2  1  TIGR01408 Ube1: ubiquitin-activating enzyme E1
    1.3e-05   21.6   0.0    1.9e-05   21.1   0.0    1.1  1  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
     0.0015   15.8   0.0     0.0026   14.9   0.0    1.4  1  TIGR03736 PRTRC_ThiF: PRTRC system ThiF family protein
     0.0059   13.4   0.0      0.008   13.0   0.0    1.2  1  TIGR01035 hemA: glutamyl-tRNA reductase
  ------ inclusion threshold ------
      0.018   12.6   0.0      0.026   12.1   0.0    1.1  1  TIGR03603 cyclo_dehy_ocin: bacteriocin biosynthesis cyclodehydratase, SagC family


Domain annotation for each model (and alignments):
>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   2.8e-26   1.4e-23      13     150 ..      84     231 ..      77     249 .. 0.85

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 2.8e-26
    TIGR02355  13 aldfdGqeklkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinaklddeelaal...iak.....hdvvvdctdnvevrnqlnrqcfaakvplvs..gaairl 150
                  +  +   ++l  s+v++vGlGG+G  a++ l+ +GvG+ltl+d d + +sn +rq+    +++gq k+++ k++lee+np i+++ i + +++e+ +++   i++     ++  +d+ d  + +    ++c ++kvp+v+  g+a r+
  MMETSP1061-20121228|26216_1  84 EEHLRVVDRLEMSRVVLVGLGGVGSWAAEALCRSGVGHLTLIDLDDICISNTNRQLHALSTSVGQMKIDAMKKRLEEINPEIQVTLIHDFVSKENADEIwntIEElspqpVTACLDAIDGSDAKTAWIASCARRKVPIVTcgGSAGRI 231
                  555666789**********************************************9999****************************999998887776222443222224577899999999999************9733556565 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.7   0.0   3.2e-25   1.6e-22      17     142 ..      91     224 ..      79     254 .. 0.89

  Alignments for each domain:
  == domain 1    score: 77.7 bits;  conditional E-value: 3.2e-25
    TIGR02356  17 qklleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlkelnseirvealkeevtaenleelieqvd........lvlDctDnfktrylindaceaagkPlisa 142
                  ++l  s+v+++G+Gg+gs +ae l + Gvg+++++D D++ +sN +rq     + v++ K +a+++rl+e+n+ei+v+ ++  v +en  e  ++++          lD+ D  +++ +  + c+  + P+++ 
  MMETSP1061-20121228|26216_1  91 DRLEMSRVVLVGLGGVGSWAAEALCRSGVGHLTLIDLDDICISNTNRQLHALSTSVGQMKIDAMKKRLEEINPEIQVTLIHDFVSKENADEIWNTIEelspqpvtACLDAIDGSDAKTAWIASCARRKVPIVTC 224
                  699*********************************************99999********************************99988766665544466655789****999**999999*9999999874 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.1   0.0   2.8e-24   1.4e-21      13     125 ..      87     208 ..      78     238 .. 0.79

  Alignments for each domain:
  == domain 1    score: 75.1 bits;  conditional E-value: 2.8e-24
    TIGR02354  13 ekvveklkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqqykvs.dvGkkktealkeqiseinPyveieiidekideenleklfkdad........ivieafdnaeaka 125
                   +vv++l+ ++v ++GlGG+Gs +a +l r+G+g+l l+d d + +sn nrq + +s  vG++k  a+k++++einP +++  i   +++en +++ + ++          ++a d + ak+
  MMETSP1061-20121228|26216_1  87 LRVVDRLEMSRVVLVGLGGVGSWAAEALCRSGVGHLTLIDLDDICISNTNRQLHALStSVGQMKIDAMKKRLEEINPEIQVTLIHDFVSKENADEIWNTIEelspqpvtACLDAIDGSDAKT 208
                  4799*************************************************998736************************************998775222222112345666666664 PP

>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   4.4e-09   2.3e-06      20     108 ..      91     179 ..      83     243 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 4.4e-09
    TIGR01408  20 kklaksnvlisGmkGlGveiaknlvlaGvksvtlhdeekvelwdlssnfflseddvgknraeasvkklaelnqyvvvssvskslnkefl 108
                   +l  s+v+++G++G+G   a  l+ +Gv  +tl d + + + +   +       vg+ + +a  k+l+e+n+ ++v+ +++ + ke  
  MMETSP1061-20121228|26216_1  91 DRLEMSRVVLVGLGGVGSWAAEALCRSGVGHLTLIDLDDICISNTNRQLHALSTSVGQMKIDAMKKRLEEINPEIQVTLIHDFVSKENA 179
                  57788888888888888888888888888888888888888888888888778888888888888888888888888888777766654 PP

>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.7e-08   1.9e-05     333     413 ..      91     168 ..      86     174 .. 0.90

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.7e-08
    TIGR01381 333 evlssvkvlllGaGtlGcqvarvllGyGvrhitfvdngkvsfsnPvrqslynfedcleggegkaetaakalkrifPaieas 413
                  ++l+ ++v+l+G G +G+  a +l   Gv h+t++d   +++sn  rq l+ +  +   g++k ++ +k l++i P i+ +
  MMETSP1061-20121228|26216_1  91 DRLEMSRVVLVGLGGVGSWAAEALCRSGVGHLTLIDLDDICISNTNRQ-LHALSTS--VGQMKIDAMKKRLEEINPEIQVT 168
                  789999*****************************************9.6666544..5679***************9975 PP

>> TIGR03736  PRTRC_ThiF: PRTRC system ThiF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.1e-06    0.0026      13      85 ..      97     160 ..      89     199 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.1e-06
    TIGR03736  13 kvvlvGaGGtGsqllegLarlhkalkalGhpaGlkvtvlDdDtvseanvgRqafap.advGankaivlvqRvnq 85 
                  +vvlvG GG Gs   e+L r       +Gh      t +D D +  +n  Rq++a  + vG++k +++ +R+ +
  MMETSP1061-20121228|26216_1  97 RVVLVGLGGVGSWAAEALCR-----SGVGHL-----TLIDLDDICISNTNRQLHALsTSVGQMKIDAMKKRLEE 160
                  79**********99888776.....345655.....99**************9975268*********999876 PP

>> TIGR01035  hemA: glutamyl-tRNA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   1.6e-05     0.008     169     211 ..      84     126 ..      43     180 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.6e-05
    TIGR01035 169 elaekilgsLkgkkvlliGaGemaeLvakhLkekgvkkvliln 211
                  e+  ++++ L+  +v+l+G+G +++ +a++L + gv+++++++
  MMETSP1061-20121228|26216_1  84 EEHLRVVDRLEMSRVVLVGLGGVGSWAAEALCRSGVGHLTLID 126
                  56679999******************************98764 PP

>> TIGR03603  cyclo_dehy_ocin: bacteriocin biosynthesis cyclodehydratase, SagC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0     5e-05     0.026      69     150 ..      91     174 ..      77     181 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 5e-05
    TIGR03603  69 dydkelkvsKvL...lgklglnvakklsnsnakalfls..dktyvketael.dlyskdaiqlkkarlltskldalekksnvddlkdal 150
                  d    l++s+v+   lg  g  +a++l++s+++ l+l+  d++ +++t+++   + +  +++ k++ ++++l+ ++++++v  ++d +
  MMETSP1061-20121228|26216_1  91 D---RLEMSRVVlvgLGGVGSWAAEALCRSGVGHLTLIdlDDICISNTNRQlH-ALSTSVGQMKIDAMKKRLEEINPEIQVTLIHDFV 174
                  4...578888877889***************9988766226889999997633.33445566667889**********9998887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.32
# Mc/sec: 1501.38
//
Query:       MMETSP1061-20121228|26225_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 770.82
//
Query:       MMETSP1061-20121228|26244_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   12.0   0.0      0.035   11.9   0.0    1.1  1  TIGR00252 TIGR00252: TIGR00252 family protein


Domain annotation for each model (and alignments):
>> TIGR00252  TIGR00252: TIGR00252 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   8.6e-06     0.035      58     105 ..      23      69 ..       6      73 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 8.6e-06
    TIGR00252  58 rssaayd.gallsvnarkqekllqtanlfLakqnpsledvnCrfDvviv 105
                  r++  +  +++ +  a  q+ ll++a+ f  ++  s++ ++   Dvviv
  MMETSP1061-20121228|26244_1  23 RRGIGHRaSGIDA-SADGQKELLHSARCFRVQH-YSYSAIDIDIDVVIV 69 
                  4444444255554.567899***********99.*************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 557.29
//
Query:       MMETSP1061-20121228|26245_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-05   19.3   0.4    6.8e-05   19.2   0.3    1.0  1  TIGR00811 sit: silicon transporter


Domain annotation for each model (and alignments):
>> TIGR00811  sit: silicon transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.3   1.7e-08   6.8e-05     493     539 ..       2      48 ..       1      56 [. 0.88

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.7e-08
    TIGR00811 493 elkelleeassdeekaafeaalalevkaldklneeeeeeadlkkeve 539
                  +l+e ++ + +++e+++fe++l++e++ l++ n e+++++ ++ ++e
  MMETSP1061-20121228|26245_1   2 HLREQIKLSLTEDERSTFEESLKIEIRNLERKNLEQKQQSGVQIKTE 48 
                  58999999***************************999888776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.17
# Mc/sec: 559.01
//
Query:       MMETSP1061-20121228|26246_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 544.46
//
Query:       MMETSP1061-20121228|26270_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 514.30
//
Query:       MMETSP1061-20121228|26286_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-87  291.3   0.0    1.1e-85  286.3   0.0    2.0  1  TIGR01499 folC: bifunctional protein FolC
    3.5e-09   33.9   0.0    0.00017   18.4   0.0    2.4  2  TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase
    1.7e-06   25.0   0.0    7.8e-06   22.9   0.0    2.0  2  TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
    0.00058   15.8   0.0      0.022   10.5   0.0    2.5  3  TIGR02068 cya_phycin_syn: cyanophycin synthetase
  ------ inclusion threshold ------
      0.026   11.4   0.0       0.27    8.1   0.0    2.3  3  TIGR01082 murC: UDP-N-acetylmuramate--alanine ligase


Domain annotation for each model (and alignments):
>> TIGR01499  folC: bifunctional protein FolC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  286.3   0.0   1.3e-88   1.1e-85       1     399 [.      37     463 ..      37     464 .. 0.82

  Alignments for each domain:
  == domain 1    score: 286.3 bits;  conditional E-value: 1.3e-88
    TIGR01499   1 lermkkllealgnp.ekk.lrvihvaGTnGKGStaaflesiLeaa...g...............lkvglftSPHlvsfrERirvngepiseeelaqlveeveealkkls.pskptfFelltllaflyFaeeqvdvavlEvGlGGrlDaTnvie.pevsvitsiglDHteiLGdtleeIAkeKagIikegvpivtaeqepealevlkkkAeekgaellvvdkdfeikekeeklsfegenlkleklklsllgehqvenaalalaalevlakessekleeeekr...eglestkwpGRleileednpnillDgAHnpesaealvewlkkeankrkivllfgllkdkdaaallkalkelvkk..e.vlvtevespraesaadlekaaesqge........eelvsswrealeeakekaeeeekvlVtGSlylvgevlkl 399
                  le+m+ l + lg p ++    v+hvaGTnGKGS++  +++ L+++   g               l+vg+f SPH+ sfrER++vnge+i+eee+++l+ ++++    ++ +  +tfFe++t+laf  Fa++++dv+vlE+GlGGrlDaTnvi  p +s+itsigl+Ht+iLGdt+e IAkeK+gIik+  p+++++  +   +vl + A+ek+a  + +++ ++ + ++   ++++++ ++++     ++++  en ++a aal +l +++++ + ++  +   e  +s++ p R+e le++  +++lD+AHnp+++e lv +lk+ +++r+ ++++g+ +dkd+ ++ + l +++++  + +++++  +pra+s + + +a  + ++         ++++++ +ale +  k +e e ++V+GS++l +e+++ 
  MMETSP1061-20121228|26286_1  37 LENMHLLHKLLGSPmDDPdRVVVHVAGTNGKGSVCLKIANTLRHQerrGaspflgqdadtkdrkLNVGIFCSPHVSSFRERMQVNGEMITEEEVTELLPQIYDLCLPENhDIPATFFEITTALAFAFFAKRGADVIVLETGLGGRLDATNVIAnPALSIITSIGLEHTRILGDTIELIAKEKGGIIKKDRPVLVGP--HCPHDVLTECAREKSAGRYYTPSLVHNSLQDFENTSKQAKESSND-D---PADYDKENQEIAKAALVLLEQSHPQFFGKDLTSdeiEQFTSIRPPCRFETLEKEGTTVILDVAHNPSAMEYLVYKLKTTYPDRPFRFVAGMSSDKDLGQCARSLLSTTQEssRnIHLVQAAHPRAASLEHILEAESTLEKaahydfddRSITKQVLNALELS--KENEGEILVVCGSVFLMAETREA 463
                  6899999*******654467899******************9655222122222233333333378*************************************976665589***********************************************************************************9..5556899********999999987776655544445555545555.4...55555556555555555555555443333333311267888899****************************************************************999956************999998876666645678866666666666666665..4577788889*********9985 PP

>> TIGR01085  murE: UDP-N-acetylmuramyl-tripeptide synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   9.3e-06    0.0076      85     115 ..      56      86 ..      27      92 .. 0.80
   2 !   18.4   0.0   2.1e-07   0.00017     311     406 ..     312     411 ..     262     453 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9.3e-06
    TIGR01085  85 lkviGvtGTnGKttttsliaqlleklgkktg 115
                    v+ v+GTnGK +++  ia+ l++++++ +
  MMETSP1061-20121228|26286_1  56 RVVVHVAGTNGKGSVCLKIANTLRHQERRGA 86 
                  45899********************999976 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 2.1e-07
    TIGR01085 311 ealeklkgv..kGRlelvdsgqkfevivDYAHtpdalekvletlr.klkkgrlivvfGagGdrDrtK..RplmgaiAekladkviltddnPRsedpeqIla 406
                  +++e+++++  + R+e++++ ++ +vi D AH p+a+e ++ +l+ +  ++    v G   d+D +   R l++   e   +  ++    PR  + e+Il+
  MMETSP1061-20121228|26286_1 312 DEIEQFTSIrpPCRFETLEK-EGTTVILDVAHNPSAMEYLVYKLKtTYPDRPFRFVAGMSSDKDLGQcaRSLLSTTQESSRNIHLVQAAHPRAASLEHILE 411
                  4455555552258*****99.679*********************6667778999*********7654488999888888888888889999999998886 PP

>> TIGR01143  murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.98     8e+02      75      99 ..      57      81 ..      42      87 .. 0.80
   2 !   22.9   0.0   9.6e-09   7.8e-06     121     367 ..     164     403 ..     153     460 .. 0.58

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.98
    TIGR01143 75 kvigiTGSsGKTttKemlaaiLskk 99
                  v+ ++G +GK ++   +a+ L+++
  MMETSP1061-20121228|26286_1 57 VVVHVAGTNGKGSVCLKIANTLRHQ 81
                 5788999999999988888877776 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 9.6e-09
    TIGR01143 121 rleeeedyavlEmGaskpGeiaelaeivkPdiavitnigeaHleefg.slegiaeaKseilqalkengiavinaddaalaklakelk.ekavlsfgledadveaedvelkelgasftleakdeeievelpllgrhnveNalaaiala..lelglsleeiaeglselklvkgRleilekkgltlidDaYNAnpdsmkaaldalaalsekgkkilvlGdm..aELGeeseelHaevgekaaslkidlvflvgeea 367
                   +++  d++vlE G    G ++++  i++P   +it ig +H   +g ++e ia++K+ i+++   +  +++  + ++ ++l +++  ++a +++  +  + +++d+e ++++   + + +d+ +++     +++ +++al+ +  +  +++g +l+  +        ++ R+e+lek+g t+i D    np++m+  +  l+++ +++   +v G    + LG+ ++ l     e   s++i+lv  + + a
  MMETSP1061-20121228|26286_1 164 FAKRGADVIVLETGLG--GRLDATNVIANPALSIITSIGLEHTRILGdTIELIAKEKGGIIKK---DRPVLVGPHCPH-DVLTECAReKSAGRYYTPSLVHNSLQDFENTSKQ--AKESSNDDPADYDKE--NQEIAKAALVLLEQShpQFFGKDLTSDEIEQFTSIRPPCRFETLEKEGTTVILDV-AHNPSAMEYLVYKLKTTYPDRPFRFVAGMSsdKDLGQCARSLLSTTQES--SRNIHLVQAAHPRA 403
                  5678899*******96..889************************6527899**********9...445555555554.4444444423346666666655566666655554..444445543343333..4444444444433331145555554433222222334788888888888888887.4578888888888888777777777766432256777776665544433..33344454444444 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.1   0.0    0.0096       7.9     474     503 ..      52      80 ..      43      86 .. 0.78
   2 ?   -2.2   0.1       0.2   1.6e+02     539     591 ..     165     216 ..     159     224 .. 0.80
   3 !   10.5   0.0   2.7e-05     0.022     718     765 ..     321     368 ..     308     388 .. 0.78

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.0096
    TIGR02068 474 eddgriPivavtGtnGkttvtrlvahilkl 503
                  +d+ r+ +v v+GtnGk  v   +a+ l+ 
  MMETSP1061-20121228|26286_1  52 DDPDRV-VVHVAGTNGKGSVCLKIANTLRH 80 
                  555555.89*********999888877765 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.2
    TIGR02068 539 kdktvdaavletarGgiLreGLafdradvgvvtniaaDhLGlgdintiedlak 591
                  +++  d+ vlet  Gg L       +   +++t i+ +h  + + +tie +ak
  MMETSP1061-20121228|26286_1 165 AKRGADVIVLETGLGGRLDATNVIANPALSIITSIGLEHTRILG-DTIELIAK 216
                  6678899************9999999999*****9999976654.56666665 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 2.7e-05
    TIGR02068 718 qaPgrfnlfnlggatvlvDyahnpealkavveaveklkarrrigvvgg 765
                  + P rf+ ++ +g tv+ D ahnp+a++ +v  +++   +r    v+g
  MMETSP1061-20121228|26286_1 321 RPPCRFETLEKEGTTVILDVAHNPSAMEYLVYKLKTTYPDRPFRFVAG 368
                  5699*************************9988887665555544433 PP

>> TIGR01082  murC: UDP-N-acetylmuramate--alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0      0.11        90     100     125 ..      56      81 ..      43     104 .. 0.71
   2 ?   -2.1   0.0      0.39   3.2e+02     166     186 ..     189     210 ..     182     219 .. 0.77
   3 ?    8.1   0.0   0.00033      0.27     293     347 ..     309     364 ..     285     371 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.11
    TIGR01082 100 kesiavaGthGKttttaliavvlkea 125
                  +  + vaGt GK ++   ia  l++ 
  MMETSP1061-20121228|26286_1  56 RVVVHVAGTNGKGSVCLKIANTLRHQ 81 
                  46789*******99988887777654 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.39
    TIGR01082 166 lqpevaivtniekdHld.yyss 186
                   +p  +i+t+i  +H    +++
  MMETSP1061-20121228|26286_1 189 ANPALSIITSIGLEHTRiLGDT 210
                  589999*******998755555 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00033
    TIGR01082 293 aikkalasfkGvk..rRfeilgelkgvlliDDYaHhPteikatlkaarqvveekner 347
                     + +++f  ++   Rfe l++++  ++i D aH+P+ ++  +  ++++++++  r
  MMETSP1061-20121228|26286_1 309 LTSDEIEQFTSIRppCRFETLEKEG-TTVILDVAHNPSAMEYLVYKLKTTYPDRPFR 364
                  55667788888773359***96655.779999*******************976555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.39
# Mc/sec: 1685.40
//
Query:       MMETSP1061-20121228|26288_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 2166.44
//
Query:       MMETSP1061-20121228|26300_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    9.4   1.8       0.13    9.3   1.2    1.1  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
       0.15    7.5   6.8       0.17    7.3   4.7    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.31    8.7   7.5       0.38    8.5   5.2    1.1  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA
        1.5    5.0   7.1        1.7    4.9   4.9    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
        2.5    4.9   8.2        2.9    4.7   5.7    1.1  1  TIGR01554 major_cap_HK97: phage major capsid protein, HK97 family


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   1.2   0.00016      0.13      75     108 ..      44      77 ..      17      93 .. 0.77

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00016
    TIGR03752  75 laklekeNeklkkenerlkkreesvderiqqale 108
                   +kl ++N++l +ene+l+k++ +++ +i++  +
  MMETSP1061-20121228|26300_1  44 RDKLLEKNKELLEENEDLQKKQWELRAEIDRLRN 77 
                  5689999999999999999999999988875433 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.7    0.0002      0.17     851     908 ..      31      88 ..      11      94 .. 0.53

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0002
    TIGR02169 851 keiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkee 908
                  +e+ +  +++    ++l e+ +el  + ++L++++ +L++e+++l+++lr+ + +++e
  MMETSP1061-20121228|26300_1  31 QERGEGTKKDSLTRDKLLEKNKELLEENEDLQKKQWELRAEIDRLRNDLRKERARRDE 88 
                  1122222223333345555555555556666666666666666666666666555554 PP

>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   5.2   0.00046      0.38      27      86 ..      25      84 ..      18      89 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00046
    TIGR03927 27 kpnryekkdiEkntellqgeetelekelftpeeqkkikkkkkkekkeqeelkdqLfsena 86
                    ++++ + E +++     +  lek +++ ee ++++kk+    +e+++l+++L  e+a
  MMETSP1061-20121228|26300_1 25 REEQLQQERGEGTKKDSLTRDKLLEKNKELLEENEDLQKKQWELRAEIDRLRNDLRKERA 84
                 56799999999888888889999********************************88765 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   4.9     0.002       1.7      75     133 ..      25      81 ..      10      89 .. 0.45

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.002
    TIGR03319  75 rkelqklekrlkqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellke 133
                  r+e  ++e+    k+++l+r+k  l +k++el +++++l++k+ el+++ ++l++ l++
  MMETSP1061-20121228|26300_1  25 REEQLQQERGEGTKKDSLTRDK--LLEKNKELLEENEDLQKKQWELRAEIDRLRNDLRK 81 
                  2222223333333444444443..33344444444444444444444444444444433 PP

>> TIGR01554  major_cap_HK97: phage major capsid protein, HK97 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.7    0.0035       2.9      16      57 ..      43      88 ..      18      90 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0035
    TIGR01554 16 k....kltedekeeeaeeekkekdalkaeidkleaeierleeaaae 57
                 +     ++++e +ee+e+ +k+  +l+aeid+l +++++++++++e
  MMETSP1061-20121228|26300_1 43 TrdklLEKNKELLEENEDLQKKQWELRAEIDRLRNDLRKERARRDE 88
                 1332234555555666666666666999999999999988888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                      192  (0.0468064); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 599.95
//
Query:       MMETSP1061-20121228|26313_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1299.89
//
Query:       MMETSP1061-20121228|26324_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|26322_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00057   15.7   0.1    0.00074   15.3   0.0    1.1  1  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.8e-07   0.00074     504     565 ..     138     199 ..     113     224 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.8e-07
    TIGR01299 504 qvhrggeydndkflglklksvsfkdslfkectfedvtsvntyfknctfidtlfentdleeyk 565
                   + rg++ dn  f g +lk v+f++s+ ++  f+    v + f ++t+  + fen+d+   +
  MMETSP1061-20121228|26322_1 138 AITRGVNLDNSDFGGQNLKGVAFQQSIVRDTNFKGTNLVGASFFDATLDGSNFENADMSLAN 199
                  5889*************************************999*************86443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 1037.06
//
Query:       MMETSP1061-20121228|26321_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.46
# Mc/sec: 1319.89
//
Query:       MMETSP1061-20121228|26349_1  [L=1237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.2e-221  732.4   0.2   8.9e-221  732.1   0.1    1.1  1  TIGR03670 rpoB_arch: DNA-directed RNA polymerase subunit B
    5.7e-77  257.2   0.1    3.6e-46  155.2   0.0    6.6  6  TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit


Domain annotation for each model (and alignments):
>> TIGR03670  rpoB_arch: DNA-directed RNA polymerase subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  732.1   0.1  4.3e-224  8.9e-221       1     594 [.     619    1226 ..     619    1231 .. 0.95

  Alignments for each domain:
  == domain 1    score: 732.1 bits;  conditional E-value: 4.3e-224
    TIGR03670    1 vylnGkliGtvedpeelvekvrelrregklseevnvaykeetnevyintdaGrirrPllvvenGkpklteehveklk....kgeltfedlvkeGvieyldaeeeenayialseee......lteehthleidpsailGivaslipyaehnssprntmeaamakqslGlyaanyklrldtrahllhypqvplvktrvlelieyderPagqnlvvavlsyeGyniedalvlnkasierglarsvffrtyeaeerrypgGq.....edkfeiPeke.vrgyrseeaykkldedGivapeaevkgkdvligktsPPrfleeleelglaaekrrdssvtvrsgekGivdkvllteseegsklvkvrvrderipelGdkfasrhGqkGviGlivpqedmPfteeGivPdlilnPhalPsrmtvgqlleaiagkvaalegrrvdatafeeekeeelrkelkklGfkedgkevlydgitGekleaeifiGvvyyqklhhlvadklharsrGpvqvltrqPteGrareGGlrfGemerdvlvghGaalllkerlldesdkvvvlvcekcGeiaildkkkkklvc..pvcgek.ekiskvevsyafkllldelkslgiaprlk 594 
                   +++nG+ +G + dp++lv+++r+lrr  ++  ev++  +  ++ev i+tdaGri rPl vv++ +  ++++h+ +l+    +++lt++dl+ eG++ey+d+eeee +++a+++ +        + +th+ei+ps+ilG++as+ip+++hn+sprnt+++am kq++G+ya+ny++r+dt ah+lhypq+pl +tr++e++++ e P+g n  va++ y+Gyn ed+l++n+++i+rgl rs+++r y ++e+  + G+     ++ fe P+++  rg++ +  y+kld+dG+vap ++v+g+dvligkt+P   l++ + +  +   +rd s++++ +e+Givd+vl+++++eg + +kvr+r+ r+p++GdkfasrhGqkG iG++ +qedmPft eG+vPd+i+nPha+Psrmt++ql+e + gkv   +g + dat+f++  +ee+ + l+ +G+++ g+e l++g tG+ + a++f+G  +yq+l+hlv dk+h+r+rGpv +ltrqP eGr+r+GGlr+Gemerd+l++hG+a ++++r++ +sd++ + +ce+cG +a ++ kk ++ c  p c +k ++i ++e++ya klll+e++s++i++r+ 
  MMETSP1061-20121228|26349_1  619 IFVNGNWVGIHRDPRALVDTFRSLRRMVDIDAEVSIVRDIAAKEVRIYTDAGRICRPLYVVQEQQLVIKKQHIMQLQglsgEKKLTWTDLLMEGIVEYIDTEEEETTMVAMDPGDldtdesYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFLHFRELPSGVNCCVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYIDQEKASSVGTmgslnSEIFEKPSHDkTRGMK-HGDYSKLDDDGLVAPGTRVSGDDVLIGKTAP---LDSSAIM-PSRFTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKVRIRNVRVPQVGDKFASRHGQKGTIGMTYRQEDMPFTVEGMVPDIIVNPHAIPSRMTIAQLIECLLGKVVVFQGCEGDATPFTDVTVEEISSRLHIMGYQKFGNEHLFQGHTGRPMCARVFFGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMERDCLITHGCANFIRDRFFCNSDQYRIHICERCGLTAQVHLKKMTYECrtPSCQDKpTSICQIEIPYACKLLLQEMMSMCISTRIY 1226
                   79*************************************************************************9855456789***************************9996666667788*******************************************************************************************************************************999886222224668999887356665.5679***************************...6666655.88999*******************************************************************************************************************************************************************************************************************************************************96667888746799*********************9986 PP

>> TIGR02013  rpoB: DNA-directed RNA polymerase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0   0.00033      0.68      10     104 ..      58     185 ..      50     216 .. 0.62
   2 !    5.8   0.1   0.00022      0.46     126     215 ..     235     337 ..     227     395 .. 0.62
   3 !   39.4   0.0   1.6e-14   3.4e-11     382     535 ..     420     583 ..     415     605 .. 0.79
   4 !   11.3   0.0   4.8e-06    0.0098     598     650 ..     737     789 ..     668     797 .. 0.84
   5 !   30.6   0.0   7.4e-12   1.5e-08     748     851 ..     822     935 ..     816     943 .. 0.79
   6 !  155.2   0.0   1.8e-49   3.6e-46     999    1196 ..     970    1164 ..     945    1225 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00033
    TIGR02013  10 kikealelPnllevqlksyekflqkd..................teaekrkeeGlee.vfkeifPiedss.gkleLeyls...yeleepkysveeckergltysvplkvklrlilke..........e 104
                   i++ +e   l++ ql+s+++f+q+                   ++ + +++  l + +f e+ P+ + + g++ L        +   +++  +e+  r+ltys+pl+v + + ++            
  MMETSP1061-20121228|26349_1  58 VISAYFEEKGLVRQQLDSFDEFIQNTmqelvdssgdirvspelqHMVGYNDDDDLDDgAFGETKPVFEIKfGQVYLSKPTtveKDGTVTNMFPHEARLRNLTYSAPLYVDVTMNQYRvqrdiniadpS 185
                  5666677778999999999999998888999999999987777733444444445433677777765554255555432210022233344456****************999887644444444441 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.00022
    TIGR02013 126 kgtfiinGaervvvsqlhrsPgvvfseekdtskk......gkklfsakiiPsrGsWlefetD.kkdlly.vridrkr......kllvtvllralgyekdedile 215
                   g f+inG+e+v+++q   s   v+  +k++ +k       ++    +  P    +l++     ++ +   +i           ++v +++ralgy +d di+e
  MMETSP1061-20121228|26349_1 235 GGYFVINGSEKVIIAQERLSNNHVYAFKKKQPSKfswvieTRSQVENSTRPVSTLYLQMYQKgGRNAIEgNQIRS-TlpyirtDVPVVIIFRALGYVADRDIIE 337
                  478*************99998877766654333300111122223333344444455443222233332122222.1222223677777777777777777665 PP

  == domain 3    score: 39.4 bits;  conditional E-value: 1.6e-14
    TIGR02013 382 ikyliklkngkaevDDiDhlgnrrvrsvGellenqlrvglarmervvrerls..vkdtdtltPqdlinakpvvaaikeffgssq............LsqfmDqtnPlaelthkrrlsaLGpGGLtreraGfevrDvhpthYGriCPietPeGpniGLinslstyakvn 535
                  ++ l++ k g+ae DD Dh+g +r+   G ll   +r  + ++   vr +l+  + + + +     i +  ++  +k   ++++            +sq +++    + l h rr +      L+r     + r +h+th+G +CP etPeG+ +GL++ l+  a + 
  MMETSP1061-20121228|26349_1 420 VHKLLSCKLGRAEEDDRDHFGKKRLDLAGPLLGGLFRLLFRKLTLDVRRHLQrcLDEGKHFNIGAAIKSNHITDGLKYSLATGNwgdkgasapkagVSQVLNRLTYASSLSHLRRCNT----PLARTGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYIT 583
                  778999999****************************************997324556888899999999999888877766541111222222236777777777777777777654....46666666788*****************************999885 PP

  == domain 4    score: 11.3 bits;  conditional E-value: 4.8e-06
    TIGR02013 598 tlvekeevdymdvspkqvvsvaaaliPfLehDDanraLmGsnmqrqavPllks 650
                   +  +++ ++ ++ p+++++v a++iPf +h+ + r    s m +qa+ +  s
  MMETSP1061-20121228|26349_1 737 DESYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYAS 789
                  445567788999***********************************977665 PP

  == domain 5    score: 30.6 bits;  conditional E-value: 7.4e-12
    TIGR02013 748 elaLGknvlvafmpWeGynyeDailiserlvkdDvftsihieefeveardtklGe.eeitrdipnv.........seealrnLdeeGivriGaevkagdiLvGkvtPkgeselt 851
                  el  G n  va m ++Gyn eD++++++  +   +f s + + +  + +    G+   + ++i ++         +    ++Ld++G+v+ G++v+  d+L+Gk++P   s   
  MMETSP1061-20121228|26349_1 822 ELPSGVNCCVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYIDQEKASSVGTmGSLNSEIFEKpshdktrgmKHGDYSKLDDDGLVAPGTRVSGDDVLIGKTAPLDSSAIM 935
                  788899******************************9998888877777777775245666665542111111113445679*************************8777655 PP

  == domain 6    score: 155.2 bits;  conditional E-value: 1.8e-49
    TIGR02013  999 lvkvyvaqkrkiqvGDkmaGrhGnkGvvskilpieDmPfledGtpvdivLnPLgvPsrmniGqvlelhlglaakklgekgvkiatpvfdgaseeevkellekaglprdgkvklyDGrtGekfdekvtvGviYmlkLahlvddklharsiGpYslvtqqPlGGkaqfGGqrfGemevWaLeayGaayiLqelLtvksDD 1196
                     kv + + r  qvGDk+a rhG kG ++   ++eDmPf+ +G   di++nP ++Psrm i q++e+ lg +      +g + ++  f  ++ ee+++ l+ +g+++ g+ +l+ G+tG ++  +v  G ++  +L+hlvddk+h+r+ Gp +++t+qPl G+++ GG r+Geme   L  +G a+ +++     sD 
  MMETSP1061-20121228|26349_1  970 FTKVRIRNVRVPQVGDKFASRHGQKGTIGMTYRQEDMPFTVEGMVPDIIVNPHAIPSRMTIAQLIECLLGKVVVF---QGCEGDATPFTDVTVEEISSRLHIMGYQKFGNEHLFQGHTGRPMCARVFFGPTFYQRLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMERDCLITHGCANFIRDRFFCNSDQ 1164
                   578999999999**********************************************************99884...467777777899999***********************************************************************************************9988888885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.11s 00:00:00.78 Elapsed: 00:00:00.65
# Mc/sec: 2511.85
//
Query:       MMETSP1061-20121228|26356_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 746.68
//
Query:       MMETSP1061-20121228|26365_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.53
# Mc/sec: 1294.99
//
Query:       MMETSP1061-20121228|26372_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|26391_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0063   13.2   0.4     0.0088   12.7   0.2    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
  ------ inclusion threshold ------
      0.013   12.5   0.3      0.015   12.2   0.2    1.1  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
      0.013   12.2   0.3       0.02   11.5   0.2    1.3  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.018   11.8   0.2      0.025   11.3   0.1    1.3  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
       0.03   11.4   0.4      0.038   11.0   0.2    1.2  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   1.1e-05    0.0088       1      20 [.      52      71 ..      52      76 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.1e-05
    TIGR01988  1 divIvGgGlvGlalAlaLas 20
                 d++IvGgGl Gl +A +++ 
  MMETSP1061-20121228|26391_1 52 DVIIVGGGLSGLLVARSMNC 71
                 9**************99875 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.2   1.9e-05     0.015       1      18 [.      52      69 ..      52      75 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.9e-05
    TIGR01790  1 DliviGgGlAglaiAlel 18
                 D+i++GgGl+gl++A  +
  MMETSP1061-20121228|26391_1 52 DVIIVGGGLSGLLVARSM 69
                 9**************865 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2   2.4e-05      0.02       1      21 [.      52      72 ..      52      76 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2.4e-05
    TIGR01984  1 dviivGgglvGlslAlaLsrk 21
                 dviivGggl+Gl++A ++++ 
  MMETSP1061-20121228|26391_1 52 DVIIVGGGLSGLLVARSMNCS 72
                 8**************998875 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1     3e-05     0.025       1      21 [.      51      71 ..      51      77 .] 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3e-05
    TIGR01989  1 lDvvivGgGlvGlalAaalkk 21
                 +Dv+ivGgGl Gl +A +++ 
  MMETSP1061-20121228|26391_1 51 FDVIIVGGGLSGLLVARSMNC 71
                 7**************999875 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.2   4.6e-05     0.038      22      40 ..      51      69 ..      38      75 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.6e-05
    TIGR00292 22 sDviivGaGpsGLtaayyl 40
                  DviivG+G sGL  a+ +
  MMETSP1061-20121228|26391_1 51 FDVIIVGGGLSGLLVARSM 69
                 59***********999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      196  (0.0477816); expected 82.0 (0.02)
Passed Vit filter:                        45  (0.0109703); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|26393_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|26397_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|26402_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.47
# Mc/sec: 1513.66
//
Query:       MMETSP1061-20121228|26408_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.53
# Mc/sec: 687.34
//
Query:       MMETSP1061-20121228|26412_1  [L=618]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (618 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.39
# Mc/sec: 2091.52
//
Query:       MMETSP1061-20121228|26422_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1061-20121228|26422_2  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1061-20121228|26435_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1061-20121228|26439_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   13.3   1.8      0.005   13.1   1.2    1.0  1  TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit
  ------ inclusion threshold ------
       0.01   13.1   0.2      0.011   13.0   0.1    1.0  1  TIGR00006 TIGR00006: S-adenosyl-methyltransferase MraW


Domain annotation for each model (and alignments):
>> TIGR01061  parC_Gpos: DNA topoisomerase IV, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   1.2   2.4e-06     0.005     438     499 ..      14      74 ..       3      79 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.4e-06
    TIGR01061 438 elekkikeleeiiasekarkkllkkklkelkkkfaqerrskledkikkikieeeelieeedl 499
                   l  k k+l+++i+++k  kk +k ++ + k++f + +  k+e++i +ik+e e+l++e++l
  MMETSP1061-20121228|26439_1  14 SLMVKTKTLDRLIKEHKEAKKKMK-EVDQSKQTFLKIQIPKMEKEIAAIKVELERLLDEDEL 74 
                  6778899***********999996.6999****************************99875 PP

>> TIGR00006  TIGR00006: S-adenosyl-methyltransferase MraW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.1   5.6e-06     0.011     176     230 ..      15      70 ..      10      84 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 5.6e-06
    TIGR00006 176 klkttkelaeviskavpakekvkkihpatkvFQaiRi.avNdEleeleealesale 230
                   + +tk l  +i++   ak+k+k+++  +++F  i i  + +E++ ++  le  l+
  MMETSP1061-20121228|26439_1  15 LMVKTKTLDRLIKEHKEAKKKMKEVDQSKQTFLKIQIpKMEKEIAAIKVELERLLD 70 
                  5789*********************************6699*****9999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       402  (0.098001); expected 82.0 (0.02)
Passed bias filter:                      275  (0.0670405); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 553.10
//
Query:       MMETSP1061-20121228|26444_1  [L=598]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (598 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.34
# Mc/sec: 2321.46
//
Query:       MMETSP1061-20121228|26453_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.39
# Mc/sec: 1390.96
//
Query:       MMETSP1061-20121228|26476_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|26506_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   22.7   0.1      0.046   12.0   0.0    2.2  2  TIGR02656 cyanin_plasto: plastocyanin


Domain annotation for each model (and alignments):
>> TIGR02656  cyanin_plasto: plastocyanin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.0   0.00011      0.45      51      82 ..      44      75 ..      37      82 .. 0.83
   2 !   12.0   0.0   1.1e-05     0.046      54      99 .]      98     145 .]      83     145 .] 0.71

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.00011
    TIGR02656 51 keeakslsekdllnspgesyevtlseaGtysf 82
                 +++  +ls+kd+  ++g+sy+ ++ ++G+ ++
  MMETSP1061-20121228|26506_1 44 EDNRYQLSHKDYQLETGKSYKLKIVSSGQTEY 75
                 667889******************99886554 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 1.1e-05
    TIGR02656  54 akslsekdllnspgesyevtlse..aGtysfyCePhrgaGmvGkitve 99 
                   k++s ++l ++ +   e+ +    +G ++fy e   + Gm G+ tv+
  MMETSP1061-20121228|26506_1  98 IKAVSLTELEFEQEGEAEIYFVPikPGSFEFYAEGLEAKGMEGTFTVK 145
                  44555566666555555555543459*******************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 832.11
//
Query:       MMETSP1061-20121228|26513_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-06   26.1   0.0    1.7e-06   25.8   0.0    1.3  1  TIGR01993 Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
    0.00065   17.4   0.0    0.00077   17.1   0.0    1.1  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family
     0.0039   15.8   0.0     0.0054   15.4   0.0    1.4  1  TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC
  ------ inclusion threshold ------
      0.025   12.4   0.0      0.026   12.4   0.0    1.2  1  TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB
      0.029   12.3   0.0       0.03   12.3   0.0    1.2  1  TIGR01685 MDP-1: magnesium-dependent phosphatase-1


Domain annotation for each model (and alignments):
>> TIGR01993  Pyr-5-nucltdase: pyrimidine 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.1e-09   1.7e-06       1      41 [.      19      59 ..      19      71 .] 0.85

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2.1e-09
    TIGR01993  1 kvllFDlDntLypssagifklikrniteflaeklklseeea 41
                 +vllFDlD tLy++s g ++ i+ ni +f++e  + + ++ 
  MMETSP1061-20121228|26513_1 19 DVLLFDLDGTLYDHSCGYEEEIHSNIFKFMVESRGGKFDAI 59
                 589***************************99766555555 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   9.4e-07   0.00077       2      42 ..      18      60 ..      17      70 .. 0.68

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 9.4e-07
    TIGR02253  2 ikavfFDlddTLidtskl.aekalrevvevliee.gleldeee 42
                 i +++FDld+TL+d s    e++  ++ +++ e  g + d+ +
  MMETSP1061-20121228|26513_1 18 IDVLLFDLDGTLYDHSCGyEEEIHSNIFKFMVESrGGKFDAIT 60
                 6789**********88651566677999999876133344444 PP

>> TIGR01681  HAD-SF-IIIC: HAD phosphatase, family IIIC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   6.5e-06    0.0054       2      23 ..      20      41 ..      19      70 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.5e-06
    TIGR01681  2 vivfDlDnTLwtdeedvvkedp 23
                 v+ fDlD+TL+++ + +  e +
  MMETSP1061-20121228|26513_1 20 VLLFDLDGTLYDHSCGYEEEIH 41
                 899**********999666555 PP

>> TIGR01484  HAD-SF-IIB: HAD hydrolase, family IIB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   3.1e-05     0.026       2      22 ..      21      45 ..      20      68 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 3.1e-05
    TIGR01484  2 lffDlDgTLldpk....lelseeli 22
                 l+fDlDgTL d++     e++  ++
  MMETSP1061-20121228|26513_1 21 LLFDLDGTLYDHScgyeEEIHSNIF 45
                 89**********9765555555444 PP

>> TIGR01685  MDP-1: magnesium-dependent phosphatase-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   3.7e-05      0.03       2      18 ..      18      34 ..      17      65 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.7e-05
    TIGR01685  2 pkvivfDlDgTlWdhyn 18
                 ++v  fDlDgTl+dh +
  MMETSP1061-20121228|26513_1 18 IDVLLFDLDGTLYDHSC 34
                 6899***********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 407.44
//
Query:       MMETSP1061-20121228|26510_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.1e-153  508.7   1.1   1.3e-153  508.5   0.7    1.0  1  TIGR02239 recomb_RAD51: DNA repair protein RAD51
   5.4e-133  440.8   0.4   6.1e-133  440.6   0.3    1.0  1  TIGR02238 recomb_DMC1: meiotic recombinase Dmc1
   1.1e-102  341.4   0.3   1.3e-102  341.2   0.2    1.0  1  TIGR02236 recomb_radA: DNA repair and recombination protein RadA
    4.5e-39  132.3   0.0    7.2e-39  131.7   0.0    1.3  1  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
    7.2e-14   49.6   0.3    9.8e-14   49.2   0.2    1.2  1  TIGR02012 tigrfam_recA: protein RecA
    6.8e-08   29.5   0.2    8.9e-08   29.1   0.1    1.1  1  TIGR00416 sms: DNA repair protein RadA
    2.9e-07   28.2   0.3    8.4e-07   26.7   0.2    1.7  1  TIGR03881 KaiC_arch_4: KaiC domain protein, PAE1156 family
    8.7e-07   26.1   0.7     0.0038   14.1   0.3    2.8  3  TIGR03600 phage_DnaB: phage replicative helicase, DnaB family
    8.1e-05   19.9   0.1    0.00029   18.1   0.0    1.8  2  TIGR03878 thermo_KaiC_2: KaiC domain protein, AF_0795 family
     0.0005   17.5   0.4     0.0015   15.9   0.3    1.8  1  TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
  ------ inclusion threshold ------
      0.014   12.1   0.5       0.36    7.4   0.1    2.2  2  TIGR00665 DnaB: replicative DNA helicase


Domain annotation for each model (and alignments):
>> TIGR02239  recomb_RAD51: DNA repair protein RAD51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  508.5   0.7  3.4e-156  1.3e-153       2     316 .]      27     339 .]      26     339 .] 0.99

  Alignments for each domain:
  == domain 1    score: 508.5 bits;  conditional E-value: 3.4e-156
    TIGR02239   2 ekleekgiaaadikklkeaglktvesvayapkkqlleikGlseakadkllaeaaklvplgfttaaelhkkrkevislttGskeldklleGGietGsiteifGefrtGktqlchtlavtcqlpvekgGgeGkalyidtegtfrperllaiaerygldeeevldnvayaraynadhqlklllqaaalmaesryallivdsatalyrtdysGrgelsarqkhlakflrslqrladefgvavvitnqvvaqvdGaaamfaadakkpiGGnilahasttrlslrkGkGeerickiydspclpeaeavfaiaedGigdake 316
                  + l e+gia++d++kl++ag++tves+a+a+ ++l ++kG+seak+ kl + ++++v ++f+taa+  + r+++ +lttGs e+dklleGGietGsite+fGefrtGktqlchtl+vtcq+p+ +gG+eGka+yidteg+frperl +iaer+gld++ vl+nva+ara+n++hq++ll+ aaa+m++ ryall+vdsatal+rtdy+Grgels rq+++++flr+l+rla+efgvav itnqvva+ dG    fa da+kpiGGni+ahasttrl lrkG+Ge+ri+ +ydsp+lpeae++fa++++G+ da+e
  MMETSP1061-20121228|26510_1  27 DVLAEHGIASNDLQKLQNAGYYTVESIAHATTRKLSDVKGISEAKVLKLKEIVKQMVSMEFKTAADALEDRQSIAMLTTGSVEIDKLLEGGIETGSITEVFGEFRTGKTQLCHTLCVTCQMPIAEGGAEGKAIYIDTEGSFRPERLRSIAERFGLDPAVVLENVACARAHNSEHQMELLKVAAAIMSQDRYALLVVDSATALFRTDYTGRGELSERQMQMGQFLRQLTRLAEEFGVAVFITNQVVANPDGM--SFAKDATKPIGGNIIAHASTTRLRLRKGRGENRIMSVYDSPSLPEAECQFALSNAGVCDATE 339
                  6799******************************************************************************************************************************************************************************************************************************************************7..5**********************************************************875 PP

>> TIGR02238  recomb_DMC1: meiotic recombinase Dmc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  440.6   0.3  1.6e-135  6.1e-133       2     314 .]      27     337 ..      26     337 .. 0.99

  Alignments for each domain:
  == domain 1    score: 440.6 bits;  conditional E-value: 1.6e-135
    TIGR02238   2 delqkhGinvadikklksagiltvkgvlmttkrellkikGlseakvdkikeaaekiievsfitavellekrkkvlkistGskaldkilGGGiesmsitevfGefrtGktqlshtlcvtaqlpkelggaeGkvayidtegtfrpdrikkiaerfgldaeavldnilyaraytsehqmelleklaaklaeegdfrllivdsilalfrvdysGrGelserqqklaqmlsklsklseefnvavlltnqvqadpGatmlfiadakkpvGGhvlahasatrlllrkGrgdervaklydspdlpeaeasykitegGiada 314
                  d l +hGi  +d++kl++ag++tv+++  +t r+l ++kG+seakv k+ke+ +++++++f ta+++le r+++  ++tGs ++dk+l GGie+ sitevfGefrtGktql+htlcvt+q+p + ggaeGk +yidteg+frp+r+++iaerfgld+  vl+n+  ara++sehqmell+ +aa ++++ +++ll+vds  alfr dy+GrGelserq ++ q l +l++l+eef vav++tnqv+a+p + m f+ da+kp+GG ++ahas+trl lrkGrg++r+  +ydsp lpeae+ +++++ G+ da
  MMETSP1061-20121228|26510_1  27 DVLAEHGIASNDLQKLQNAGYYTVESIAHATTRKLSDVKGISEAKVLKLKEIVKQMVSMEFKTAADALEDRQSIAMLTTGSVEIDKLLEGGIETGSITEVFGEFRTGKTQLCHTLCVTCQMPIAEGGAEGKAIYIDTEGSFRPERLRSIAERFGLDPAVVLENVACARAHNSEHQMELLKVAAAIMSQD-RYALLVVDSATALFRTDYTGRGELSERQMQMGQFLRQLTRLAEEFGVAVFITNQVVANPDG-MSFAKDATKPIGGNIIAHASTTRLRLRKGRGENRIMSVYDSPSLPEAECQFALSNAGVCDA 337
                  7899***************************************************************************************************************************************************************************************98.***********************************************************99.**********************************************************996 PP

>> TIGR02236  recomb_radA: DNA repair and recombination protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  341.2   0.2  3.5e-105  1.3e-102       7     311 .]      33     336 ..      27     336 .. 0.97

  Alignments for each domain:
  == domain 1    score: 341.2 bits;  conditional E-value: 3.5e-105
    TIGR02236   7 gvGpataeklreaGyetleaiavasakelsevagisestaakiieaareaadlggfetaaevlerrkkvkklttgskeldellGGGietqaitelfGefGsGktqiahqlavnvqlpeekGglegkavyidtentfrperieqlakaeeldeeevlkniyvaraynsnhqlllvekakelikeekepvkllvvdsltahfraeyvGrgelaerqqklnkhladlekladlynvavlvtnqvqakPd..affGdptkaiGGhilghaatfrlylrkskedkriaklvdsPhlpegeavfritekGlkd 311
                  g+ ++  +kl++aGy+t+e+ia a+++ ls+v+gise +  k+ e  ++++ ++ f+taa+ le r+++  lttgs e+d+ll GGiet +ite+fGef +Gktq++h+l+v+ q+p  +Gg egka+yidte++frper++ +a+  +ld+  vl+n+ +ara+ns+hq+ l + a  ++++++    llvvds ta fr++y+Grgel+erq ++++ l +l++la+ + vav++tnqv a+Pd   f  d+tk+iGG+i++ha+t rl lrk++++ ri+ ++dsP+lpe+e+ f++ ++G+ d
  MMETSP1061-20121228|26510_1  33 GIASNDLQKLQNAGYYTVESIAHATTRKLSDVKGISEAKVLKLKEIVKQMVSME-FKTAADALEDRQSIAMLTTGSVEIDKLLEGGIETGSITEVFGEFRTGKTQLCHTLCVTCQMPIAEGGAEGKAIYIDTEGSFRPERLRSIAERFGLDPAVVLENVACARAHNSEHQMELLKVAAAIMSQDR--YALLVVDSATALFRTDYTGRGELSERQMQMGQFLRQLTRLAEEFGVAVFITNQVVANPDgmSFAKDATKPIGGNIIAHASTTRLRLRKGRGENRIMSVYDSPSLPEAECQFALSNAGVCD 336
                  67778889********************************************88.**************************************************************************************************************************99999997..69*********************************************************5447789***************************************************965 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  131.7   0.0   1.9e-41   7.2e-39       1     209 [.     110     334 ..     110     335 .. 0.88

  Alignments for each domain:
  == domain 1    score: 131.7 bits;  conditional E-value: 1.9e-41
    TIGR02237   1 ldellgGgvergiitqiyGpggsGKtnialilaveaa......ekgkkvvyiDtEG.lsleRlkqiaedr...fekvlsklivfevfdldeqekaiqkaskliekekadlvvvDsltalyRleksddr..islklelarqlslLlslArkkdlavvitnqvyedvdnd.....tlrplggtlleylskvilrleklergeRkavlekHrsrkeGesvkfrivddGi 209
                  +d+ll+Gg+e+g it+++G++ +GKt+++ +l v+ +       +  k++yiDtEG + +eRl++iae     +  vl+++   ++++ + q + ++ a+ +++++++ l+vvDs+tal+R + ++     ++++++++ l  L +lA  + +av itnqv  + d+       ++p+gg++++++s + lrl k   ++R + +    s +e  +++f + + G+
  MMETSP1061-20121228|26510_1 110 IDKLLEGGIETGSITEVFGEFRTGKTQLCHTLCVTCQmpiaegGAEGKAIYIDTEGsFRPERLRSIAERFgldPAVVLENVACARAHNSEHQMELLKVAAAIMSQDRYALLVVDSATALFRTDYTGRGelSERQMQMGQFLRQLTRLAEEFGVAVFITNQVVANPDGMsfakdATKPIGGNIIAHASTTRLRLRKGRGENRIMSVYDSPSLPE-AECQFALSNAGV 334
                  89*************************998777665322221223346*******************98777799***********************************************98876656899999**************************9877544555599*********************66999999999999999.789998888886 PP

>> TIGR02012  tigrfam_recA: protein RecA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.2   2.6e-16   9.8e-14      28     223 ..      95     304 ..      68     312 .. 0.79

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 2.6e-16
    TIGR02012  28 kkveevevistGslaldlalGvGGlpkGriieiyGpessGkttlalhviaeaqk......aggvaafidaehaldpv....yakklgvd....idellvsqpdtGeqale...ivetlvrsgavdiivvdsvaalvpkaei.eGemgdskvGlqarlmsqalrkltgalsksntvlifinqirek.iGvmfGnpettt.GGkalkfyasvrldirr 223
                  ++ +++ +++tGs+++d  l  GG+  G i+e++G   +Gkt l+  +   +q       a g a +id+e ++ p+     a+++g d    ++++ +++  + e+ +e   ++ +++      ++vvds +al   +    Ge+++ ++      m q lr+lt   ++   ++   nq+     G++f +  t + GG+ +   ++ rl +r+
  MMETSP1061-20121228|26510_1  95 EDRQSIAMLTTGSVEIDKLLE-GGIETGSITEVFGEFRTGKTQLCHTLCVTCQMpiaeggAEGKAIYIDTEGSFRPErlrsIAERFGLDpavvLENVACARAHNSEHQMEllkVAAAIMSQDRYALLVVDSATALFRTDYTgRGELSERQM-----QMGQFLRQLTRLAEEFGVAVFITNQVVANpDGMSFAKDATKPiGGNIIAHASTTRLRLRK 304
                  45677999*********9998.********************99888877777433322245789*********986222268888866555489**********98876111556677778889**********9776542688888876.....499*******98888888888889*8654279***99988754999999999****9998 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.1   2.4e-10   8.9e-08      70     222 ..      97     271 ..      52     280 .. 0.73

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.4e-10
    TIGR00416  70 leeeprfssglseldrvlGGGivkGsliliGGdPGiGkstll..lqvaaql..a..knskkvlyvsgeeslqqvklr..asrlglved........elkllsetnleqil...aeieelkpkvvvidsiqtlyladissaPGsvs....qvreitaelmrlaktrdiaifivGhvt 222
                  ++  + +++g  e+d++l GGi  Gs+  + G+   Gk+ l   l v++q+  a    + k++y+ +e s +  +lr  a+r+gl                se ++e ++   a++ + ++ ++v+ds  +l+ +d +   G +s    q+ +   +l+rla   ++a+fi   v 
  MMETSP1061-20121228|26510_1  97 RQSIAMLTTGSVEIDKLLEGGIETGSITEVFGEFRTGKTQLChtLCVTCQMpiAegGAEGKAIYIDTEGSFRPERLRsiAERFGLDPAvvlenvacARAHNSEHQMELLKvaaAIMSQDRYALLVVDSATALFRTDYTG-RGELSerqmQMGQFLRQLTRLAEEFGVAVFITNQVV 271
                  344556788999**************************98853377888873332245689***********9999966789995444444445553344577777765411145678899***************986.465553333566777899************988775 PP

>> TIGR03881  KaiC_arch_4: KaiC domain protein, PAE1156 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.2   2.2e-09   8.4e-07       3      76 ..     103     184 ..     101     234 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 2.2e-09
    TIGR03881   3 lstGveeldklleGGiPrGffvavvGePGvGktilclhfiakG...lreg...dkviyvtteesre..sivrqarqfgldle 76 
                  l+tG  e+dklleGGi  G+++ v Ge  +Gkt lc  + ++    + eg    k+iy+ te s++   + + a++fgld  
  MMETSP1061-20121228|26510_1 103 LTTGSVEIDKLLEGGIETGSITEVFGEFRTGKTQLCHTLCVTCqmpIAEGgaeGKAIYIDTEGSFRpeRLRSIAERFGLDPA 184
                  679999***************************99876654431113333111589*******9963245566788888755 PP

>> TIGR03600  phage_DnaB: phage replicative helicase, DnaB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3     1e-05    0.0038     120     218 ..      45     145 ..      31     154 .. 0.81
   2 ?    1.9   0.0     0.052        19     274     300 ..     154     180 ..     144     210 .. 0.80
   3 !    7.2   0.0    0.0012      0.46     305     352 ..     216     269 ..     189     275 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1e-05
    TIGR03600 120 kegkkaeekveeaqaalleltgksdgqedelvt.lsevledvvrslekrfekkgelaGlstGlssLDrltn.GLvkgdlivigaRPsmGKTtlalniaenv 218
                   +  ++e++ +++   l  + g s+++  +l+  +++++   ++ + +++e + ++a l+tG  ++D+l++ G++ g++  + +   +GKT l   + + +
  MMETSP1061-20121228|26510_1  45 AGYYTVESIAHATTRKLSDVKGISEAKVLKLKEiVKQMVSMEFKTAADALEDRQSIAMLTTGSVEIDKLLEgGIETGSITEVFGEFRTGKTQLCHTLCVTC 145
                  45567888888888888888888887777665425677777789999***99999***************989*******99999********98877655 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.052
    TIGR03600 274 lseldlviddkaglsvaqlrsrarrik 300
                  ++ + ++id++++   ++lrs+a r+ 
  MMETSP1061-20121228|26510_1 154 AEGKAIYIDTEGSFRPERLRSIAERFG 180
                  677889*****************9875 PP

  == domain 3    score: 7.2 bits;  conditional E-value: 0.0012
    TIGR03600 305 gldlivvDylqlmaas......ekrdrneelgeisrelKalAkELdvpvvvlaQ 352
                  + +l+vvD  + + ++      e  +r+ ++g+  r+l  lA E +v+v +  Q
  MMETSP1061-20121228|26510_1 216 RYALLVVDSATALFRTdytgrgELSERQMQMGQFLRQLTRLAEEFGVAVFITNQ 269
                  5689999998877666688866778999*********************99887 PP

>> TIGR03878  thermo_KaiC_2: KaiC domain protein, AF_0795 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.0      0.36   1.4e+02     137     161 ..      61      85 ..      27      99 .. 0.71
   2 !   18.1   0.0   7.7e-07   0.00029      29     146 ..     114     231 ..      86     313 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.36
    TIGR03878 137 idsitGlyeakemlareivrrlynf 161
                  +  + G+ eak +  +eiv+++  +
  MMETSP1061-20121228|26510_1  61 LSDVKGISEAKVLKLKEIVKQMVSM 85 
                  4567888888888888888887655 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 7.7e-07
    TIGR03878  29 plgGiPaysvlnitGvsdtGksllveqfavkq....askGekvlfvtvesPaefvaaslklraealgvdkekieeniilidaasstelrenveellatlaevikkykvkatvidsitGlyea 146
                    gGi + s++++ G   tGk+ l++  +v+     a+ G +   + +++ ++f  + l++ ae +g+d   + en+    a +     e+  ell+  a ++++ +    v+ds t l+ +
  MMETSP1061-20121228|26510_1 114 LEGGIETGSITEVFGEFRTGKTQLCHTLCVTCqmpiAEGGAEGKAIYIDTEGSFRPERLRSIAERFGLDPAVVLENVACARAHN----SEHQMELLKVAAAIMSQDRYALLVVDSATALFRT 231
                  3489********************9999987434448889998889999999***********************997644433....45567899999********************975 PP

>> TIGR03880  KaiC_arch_3: KaiC domain protein, AF_0351 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.3     4e-06    0.0015       5      76 ..     110     189 ..     106     267 .. 0.59

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4e-06
    TIGR03880   5 LDellgGGliegsvivviGeaGtGkttlslqf.......lyeGLknGekalyislee..reeeilgsakskgwdleeyldk 76 
                  +D+ll+GG+  gs++ v Ge  tGkt+l           + eG  +G ka+yi  e   r e++   a+  g d    l++
  MMETSP1061-20121228|26510_1 110 IDKLLEGGIETGSITEVFGEFRTGKTQLCHTLcvtcqmpIAEGGAEG-KAIYIDTEGsfRPERLRSIAERFGLDPAVVLEN 189
                  79************************997654111111234444444.466666654223456666666666666655555 PP

>> TIGR00665  DnaB: replicative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.1   0.00097      0.36     115     217 ..      40     143 ..      31     179 .. 0.84
   2 ?    3.0   0.0     0.022         8     321     354 ..     236     269 ..     194     273 .. 0.75

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00097
    TIGR00665 115 keivelgyesekeleelldeaeqklfevtqerkqkglvsisevlkntfeeleelkekksevtGiptgfydLDklts.GlqrsdLiivAgRPsmGKtafalniae 217
                  ++++++gy + +++ +  ++  +++  +++ ++ k  + ++++++  f++  ++ e+++++  ++tg  ++Dkl++ G++ + +  v g    GKt ++  ++ 
  MMETSP1061-20121228|26510_1  40 QKLQNAGYYTVESIAHATTRKLSDVKGISEAKVLKLKEIVKQMVSMEFKTAADALEDRQSIAMLTTGSVEIDKLLEgGIETGSITEVFGEFRTGKTQLCHTLCV 143
                  456667777777777777777777888888888888888888888999999999999999*************9872689999999999999999999877765 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.022
    TIGR00665 321 sgsednRvqelskisrsLKgLArelnvPviALsQ 354
                  +g+ ++R+ ++++  r+L  LA e+ v v    Q
  MMETSP1061-20121228|26510_1 236 RGELSERQMQMGQFLRQLTRLAEEFGVAVFITNQ 269
                  335569*********************9986666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.51
# Mc/sec: 877.34
//
Query:       MMETSP1061-20121228|26522_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.24
# Mc/sec: 401.47
//
Query:       MMETSP1061-20121228|26521_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-06   24.2   0.9    0.00012   19.9   0.3    2.1  2  TIGR02603 CxxCH_TIGR02603: putative heme-binding domain
    0.00043   17.5   0.9    0.00043   17.5   0.6    1.4  1  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III
     0.0036   14.8   1.1     0.0081   13.7   0.8    1.7  1  TIGR03045 PS_II_C550: cytochrome c-550
  ------ inclusion threshold ------
      0.022   12.7   1.2      0.033   12.2   0.7    1.6  1  TIGR03872 cytochrome_MoxG: cytochrome c(L), periplasmic


Domain annotation for each model (and alignments):
>> TIGR02603  CxxCH_TIGR02603: putative heme-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.3   1.2e-07   0.00012       5      36 ..       2      34 ..       1      42 [. 0.86
   2 ?    3.0   0.0      0.02        21     120     133 ..      84      97 ..      57      98 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 1.2e-07
    TIGR02603  5 kGkavfakaCvvCHrvggeGv.dvGPdLtgvka 36
                 kG ++f+++C  CH+v++ G+ + GP+L g+ +
  MMETSP1061-20121228|26521_1  2 KGAKIFKTKCSQCHTVEQGGAhKQGPNLYGFYN 34
                 899***************997368****99873 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.02
    TIGR02603 120 sdedladLvayLks 133
                  +++d  d+vayLk+
  MMETSP1061-20121228|26521_1  84 KPQDRHDIVAYLKK 97 
                  468999******97 PP

>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.6   4.2e-07   0.00043     109     135 ..       2      29 ..       1      99 [. 0.88

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 4.2e-07
    TIGR00782 109 agaaiFrtyCaqChGagaeGakGf.Psl 135
                  +ga iF+t C+qCh ++ +Ga+   P+l
  MMETSP1061-20121228|26521_1   2 KGAKIFKTKCSQCHTVEQGGAHKQgPNL 29 
                  5899***********9999987432666 PP

>> TIGR03045  PS_II_C550: cytochrome c-550
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.8   7.9e-06    0.0081      53      77 ..       2      29 ..       1      80 [. 0.77

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 7.9e-06
    TIGR03045 53 kgkrlfnsaCatChv...gGitktnpnv 77
                 kg ++f+++C++Ch+   gG  k  pn+
  MMETSP1061-20121228|26521_1  2 KGAKIFKTKCSQCHTveqGGAHKQGPNL 29
                 799***********64447888887775 PP

>> TIGR03872  cytochrome_MoxG: cytochrome c(L), periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.7   3.3e-05     0.033      46      75 ..       2      33 ..       1      66 [. 0.83

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 3.3e-05
    TIGR03872 46 kgeslfltacsGchGheaeg..klGPgladdy 75
                 kg ++f t cs ch  e  g  k GP l   y
  MMETSP1061-20121228|26521_1  2 KGAKIFKTKCSQCHTVEQGGahKQGPNLYGFY 33
                 899***********988765448999986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 555.45
//
Query:       MMETSP1061-20121228|26525_1  [L=833]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-28   96.8   0.5    5.7e-13   45.5   0.0    3.9  4  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.3e-22   77.5   4.4    4.4e-11   40.6   0.0    4.7  4  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    2.8e-13   47.6   4.2    0.00034   18.2   0.0    4.8  5  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    2.9e-08   30.6   0.1    0.00022   17.8   0.0    3.8  4  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor
     0.0093   14.4   2.1        1.6    7.2   0.0    4.1  4  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0     1e-07   8.5e-05     125     182 ..     290     347 ..     285     359 .. 0.93
   2 !    5.3   0.0   0.00094      0.77     463     514 ..     367     418 ..     348     431 .. 0.54
   3 !   45.5   0.0   6.9e-16   5.7e-13     465     626 ..     442     608 ..     428     614 .. 0.91
   4 !   22.5   0.0   6.2e-09   5.1e-06     467     562 ..     629     728 ..     619     736 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1e-07
    TIGR02917 125 aellalrglAaLglgeleeAqksleqAlaiapksleaklglAqlalaenkldearalv 182
                  a +l + ++ +L++ +leeAq+ +e A +i+p+   a lgl + a  +++++ ar+ +
  MMETSP1061-20121228|26525_1 290 ADILNYHAKKELRSNRLEEAQELYEMAIQIDPRDGRAYLGLSRCAQRRRDFKLARECL 347
                  78999**********************************************9999865 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.00094
    TIGR02917 463 dnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekn 514
                  +n+ l + lg    +++ la+A++ +  A  + p ++++ + LA+l   + +
  MMETSP1061-20121228|26525_1 367 ANPFLLQALGCLEEKSGRLAEAESLYISAVRSRPSHAASWVALAQLRTRKFR 418
                  3444444444444445555555555555555555555555555555444433 PP

  == domain 3    score: 45.5 bits;  conditional E-value: 6.9e-16
    TIGR02917 465 aslynllgai...ylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaark..gneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkk 626
                  +s+y++ + +   y + +d+ +Ar+ f++AL +++   +A  +L  +++  ++ ++A   fe vl+ d  n ++++a+a ++ ++   n+ ++++l e+a +++p +       + y  + g+ + a ++l+ a d++++++ ++++ g +   +++ ++a++ f++
  MMETSP1061-20121228|26525_1 442 PSSYVYTAWAsmeYKKCGDIRRARKLFKAALTVDKKCSAAWLQLGCMEAYLEKWNEAELCFETVLKFDQRNSRVIQAYAIMESKRpdSNSRKVIGLFERALKANPRDAGVLQPYGLYVARLGDMDSARELLRRATDVNKRHAPAWQAWGVMESREGNPEEARNIFQQ 608
                  55555555542124556899**************************************************************999888899999**************999999************************************************99986 PP

  == domain 4    score: 22.5 bits;  conditional E-value: 6.2e-09
    TIGR02917 467 lynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlai....dpknlkallaLaelaarkgneeeavallekaaek 562
                  l++  g     ++d+a Ar  f  AL  +  +++A++   +++++ +n+ddA++ f + l+       + +++ +a+  +++r gne++a +++ + +++
  MMETSP1061-20121228|26525_1 629 LWQGWGVLEASEGDYAAARRCFSRALDADNRNVAAITAWTNMEEKLGNLDDARALFRRSLKNftpgTDETNQLWRAYELMEQRAGNEANAQEVYRQSMRE 728
                  566667777889***********************************************9973222446778888888888899*********9999876 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   4.1e-05     0.033     146     193 ..     301     348 ..     294     359 .. 0.90
   2 ?    3.4   0.0     0.012        10     139     188 ..     373     422 ..     361     438 .. 0.83
   3 !   40.6   0.0   5.4e-14   4.4e-11      39     194 ..     453     608 ..     443     615 .. 0.94
   4 !   19.6   0.1   1.4e-07   0.00011     135     233 ..     627     730 ..     620     731 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 4.1e-05
    TIGR02521 146 lkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralle 193
                  l+ ++ e+a++  ++a++idp+  ++ l l +    +++ + Ar+ l+
  MMETSP1061-20121228|26525_1 301 LRSNRLEEAQELYEMAIQIDPRDGRAYLGLSRCAQRRRDFKLARECLK 348
                  578899999999999999999999999999999999999999999875 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.012
    TIGR02521 139 eNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeA 188
                  + +g    k g+ ++ae+    a++ +p+ + s  +la+l   k +  +A
  MMETSP1061-20121228|26525_1 373 QALGCLEEKSGRLAEAESLYISAVRSRPSHAASWVALAQLRTRKFRQGAA 422
                  5567778899999999999999***********99999998877555555 PP

  == domain 3    score: 40.6 bits;  conditional E-value: 5.4e-14
    TIGR02521  39 leYleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqk..kyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAraller 194
                  +eY + gd+++A++  + Al++d+k + a+l l+ +  +l + ++Ae  f++ l+ ++ n +v   Y     ++   +  + +  fe+A++++  ++ a +++  gl ++++gd++ a++ l+ra++++++ +++ ++   +++ +g+  eAr+++++
  MMETSP1061-20121228|26525_1 453 MEYKKCGDIRRARKLFKAALTVDKKCSAAWLQLGCMEAYLEKWNEAELCFETVLKFDQRNSRVIQAYAIMESKRPdsNSRKVIGLFERALKAN--PRDAGVLQPYGLYVARLGDMDSARELLRRATDVNKRHAPAWQAWGVMESREGNPEEARNIFQQ 608
                  89*****************************************************************986665556667778999*****987..899********************************************************9986 PP

  == domain 4    score: 19.6 bits;  conditional E-value: 1.4e-07
    TIGR02521 135 arsyeNaglcalkagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtv...eqtaesLwLgiri.akalgdaaaa.keyeaqLqklf 233
                  ar ++  g+  +++gd + a+  ++ral++d ++  ++ +  +++ k g++ +Aral+ r  +      ++ ++Lw + ++ ++++g++a+a + y ++++++f
  MMETSP1061-20121228|26525_1 627 ARLWQGWGVLEASEGDYAAARRCFSRALDADNRNVAAITAWTNMEEKLGNLDDARALFRRSLKNFtpgTDETNQLWRAYELmEQRAGNEANAqEVYRQSMRESF 730
                  667888899999************************************************99998777788999**9998647788876655056888887766 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.2   0.0   4.1e-07   0.00034      66     116 ..     304     354 ..     296     365 .. 0.89
   2 ?   -2.0   0.0      0.73     6e+02      58      93 ..     375     410 ..     372     423 .. 0.69
   3 !   14.8   0.1   4.5e-06    0.0037      31      89 ..     458     516 ..     444     531 .. 0.84
   4 ?    2.0   0.0     0.041        34      32      76 ..     563     607 ..     550     616 .. 0.74
   5 !    9.3   0.0   0.00022      0.18      52     113 ..     627     688 ..     623     712 .. 0.86

  Alignments for each domain:
  == domain 1    score: 18.2 bits;  conditional E-value: 4.1e-07
    TIGR02552  66 keyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieia 116
                  ++ eeA++ Y++a ++d+ d r+++ ++ c     + + A+++Lk+ i+ +
  MMETSP1061-20121228|26525_1 304 NRLEEAQELYEMAIQIDPRDGRAYLGLSRCAQRRRDFKLARECLKIGIAQS 354
                  6789*****************************************988765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.73
    TIGR02552  58 LaaclqalkeyeeAiaaYalaaaldlddprpvyhaa 93 
                  L+    + ++ +eA   Y+ a+  ++++++  +++a
  MMETSP1061-20121228|26525_1 375 LGCLEEKSGRLAEAESLYISAVRSRPSHAASWVALA 410
                  666666777777888888877777777766655555 PP

  == domain 3    score: 14.8 bits;  conditional E-value: 4.5e-06
    TIGR02552  31 qgkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpv 89 
                   g+ ++A+klF++  ++d   +  wl L+     l++++eA  +++  ++ d  + r++
  MMETSP1061-20121228|26525_1 458 CGDIRRARKLFKAALTVDKKCSAAWLQLGCMEAYLEKWNEAELCFETVLKFDQRNSRVI 516
                  478899****************************************9999998887765 PP

  == domain 4    score: 2.0 bits;  conditional E-value: 0.041
    TIGR02552  32 gkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYa 76 
                  g+ + A++l +  + ++   a  w ++++   + ++ eeA+++++
  MMETSP1061-20121228|26525_1 563 GDMDSARELLRRATDVNKRHAPAWQAWGVMESREGNPEEARNIFQ 607
                  666667777777777777777888888888888888888888876 PP

  == domain 5    score: 9.3 bits;  conditional E-value: 0.00022
    TIGR02552  52 akywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklai 113
                  a+ w g+++     ++y+ A+ ++++a+ +d  + +++ +  +   +lg+  +A++ +++ +
  MMETSP1061-20121228|26525_1 627 ARLWQGWGVLEASEGDYAAARRCFSRALDADNRNVAAITAWTNMEEKLGNLDDARALFRRSL 688
                  57799999999999*****************9999999999999999999999999888765 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   1.3       1.1   9.2e+02      59     102 ..      76     119 ..      69     132 .. 0.71
   2 !    3.0   0.0    0.0082       6.7     466     544 ..     289     326 ..     259     343 .. 0.61
   3 !    4.0   0.0    0.0041       3.4     401     465 ..     446     510 ..     403     522 .. 0.75
   4 !   17.8   0.0   2.7e-07   0.00022     302     468 ..     522     696 ..     513     716 .. 0.78

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 1.1
    TIGR00990  59 gqeqkeskpklskkerrkrkdaekeaekkaeekkstapkaaave 102
                  ++ ++++ p+ +++ +r  k+ +++ e+  ++++ tap+  + e
  MMETSP1061-20121228|26525_1  76 KKYKRKRIPETERERKRLSKQRQQQYERIVKQADGTAPSIWSFE 119
                  34456667777888888889999999998888888888766555 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0082
    TIGR00990 466 aPdvynyyaellldknkfdealekfdlaielekelkpisvnvlPlinkalalfrtkedfieaekllekalildPesdia 544
                    d+ ny+a   l  n ++ea e +++ai++                                         dP+   a
  MMETSP1061-20121228|26525_1 289 NADILNYHAKKELRSNRLEEAQELYEMAIQI-----------------------------------------DPRDGRA 326
                  4555555555555555555555555555555.........................................4444444 PP

  == domain 3    score: 4.0 bits;  conditional E-value: 0.0041
    TIGR00990 401 iyyhraqlhfik.gefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpe 465
                  +y   a +++ k g+   a k ++ +  +d +   +++ql++++  l++ +++e  f  + k f++
  MMETSP1061-20121228|26525_1 446 VYTAWASMEYKKcGDIRRARKLFKAALTVDKKCSAAWLQLGCMEAYLEKWNEAELCFETVLK-FDQ 510
                  56666666666546777777777777788888777888888877777777777777765543.443 PP

  == domain 4    score: 17.8 bits;  conditional E-value: 2.7e-07
    TIGR00990 302 leska.desyeeaarafekaldlgelkekealalelrGifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkal...kkdsedsdiyyhr.......aqlhfikgefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrakkkfpeaPd 468
                  +esk  d+   +   +fe+al+ +   ++ a  l+  G++    g+ + a + l+++ +++ r + ++    ++    g++++a + f++ +   ++ +   +  y         + l+   g++a a + + ++ d d  ++ +    + ++ klg+++++ alfrr+ k+f    d
  MMETSP1061-20121228|26525_1 522 MESKRpDSNSRKVIGLFERALKAN---PRDAGVLQPYGLYVARLGDMDSARELLRRATDVNKRHAPAWQAWGVMESREGNPEEARNIFQQGIwacAQLTGGQSGGYSCarlwqgwGVLEASEGDYAAARRCFSRALDADNRNVAAITAWTNMEEKLGNLDDARALFRRSLKNFTPGTD 696
                  677541445566777888888765...788888889999999999999999999999999999999999999999999999999999998662223333333333433001111156788899**************************************************75554 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.1   1.7e+03      54      99 ..     305     347 ..     296     349 .. 0.69
   2 !    7.2   0.0     0.002       1.6      44     104 ..     450     507 ..     427     518 .. 0.86
   3 ?   -1.2   0.0      0.78   6.4e+02      74     101 ..     581     608 ..     544     610 .. 0.72
   4 ?    3.2   0.1     0.033        27      16     100 ..     675     723 ..     631     735 .. 0.56

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.1
    TIGR02795  54 kykdAakaflevvkkypksekapdallklgeslqelgqkekAkktl 99 
                   +++A++ ++ +++ +p   +   a l l++++q+ ++ + A++ l
  MMETSP1061-20121228|26525_1 305 RLEEAQELYEMAIQIDP---RDGRAYLGLSRCAQRRRDFKLARECL 347
                  56677777777777444...45667888888888888888887766 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.002
    TIGR02795  44 wlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevik 104
                  w    + + +++++A k f+++++    ++k + a+l+lg + + l+++++A   +++v k
  MMETSP1061-20121228|26525_1 450 WASMEYKKCGDIRRARKLFKAALT---VDKKCSAAWLQLGCMEAYLEKWNEAELCFETVLK 507
                  7777888899999999***99999...678999***********************99986 PP

  == domain 3    score: -1.2 bits;  conditional E-value: 0.78
    TIGR02795  74 kapdallklgeslqelgqkekAkktlqe 101
                  + + a+   g++ ++ g+ e+A++++q+
  MMETSP1061-20121228|26525_1 581 RHAPAWQAWGVMESREGNPEEARNIFQQ 608
                  3445667778888888888888888876 PP

  == domain 4    score: 3.2 bits;  conditional E-value: 0.033
    TIGR02795  16 gdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlq 100
                  g+ ++A++ F++ lk+++ +t   n q w++  l++++                                    g++++A+++++
  MMETSP1061-20121228|26525_1 675 GNLDDARALFRRSLKNFTPGTDETN-QLWRAYELMEQR-----------------------------------AGNEANAQEVYR 723
                  3334444444444444444444443.444444444443...................................444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (833 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.39
# Mc/sec: 2819.15
//
Query:       MMETSP1061-20121228|26541_1  [L=502]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.8e-172  571.4   5.7   3.1e-172  571.2   3.9    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
   6.9e-109  362.7   1.9   8.3e-109  362.4   1.3    1.0  1  TIGR02053 MerA: mercuric reductase
    9.7e-77  256.2   4.2    1.2e-76  255.9   2.9    1.0  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    3.3e-66  222.2   5.1      4e-66  221.9   3.6    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
    1.9e-63  212.7   0.8    2.8e-63  212.2   0.5    1.2  1  TIGR03452 mycothione_red: mycothione reductase
    5.4e-60  201.4   2.1    6.9e-60  201.1   1.5    1.0  1  TIGR01438 TGR: thioredoxin and glutathione reductase
    5.7e-47  158.2   3.3    7.4e-47  157.8   2.3    1.1  1  TIGR01423 trypano_reduc: trypanothione-disulfide reductase
    1.6e-27   94.2   1.2    1.6e-27   94.2   0.8    2.2  2  TIGR03385 CoA_CoA_reduc: CoA-disulfide reductase
    3.1e-21   73.3   1.7    1.3e-18   64.7   0.2    2.1  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
    1.1e-18   64.9   4.1    3.5e-10   36.9   0.8    2.5  2  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    4.1e-18   63.1   3.9    2.3e-10   37.6   0.1    3.3  3  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
    7.8e-15   52.1   2.6    1.5e-06   24.7   0.1    3.1  3  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    1.9e-14   51.5   0.3    1.4e-12   45.3   0.1    2.7  3  TIGR03169 Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
    1.3e-11   40.6   2.0     0.0001   17.7   0.0    3.1  3  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    6.2e-11   39.5   3.3    2.9e-07   27.4   0.5    3.2  2  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    1.3e-10   38.4   6.4    1.9e-07   28.0   0.0    3.2  3  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
    4.2e-10   36.9   1.2    7.1e-05   19.6   0.0    3.2  3  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    7.9e-09   32.4   1.3    8.8e-05   19.1   0.0    3.2  3  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    4.4e-08   30.0   0.7    0.00042   16.8   0.1    2.4  2  TIGR03143 AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
    4.6e-08   29.8   4.2    0.00088   15.7   0.1    2.7  3  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
    4.6e-05   20.6   0.3     0.0028   14.8   0.0    2.4  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    6.4e-05   19.9   1.0     0.0011   15.8   0.2    2.1  2  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0002   19.0   0.3     0.0002   19.0   0.2    3.1  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00033   17.3   5.2     0.0096   12.5   1.8    2.2  2  TIGR02734 crtI_fam: phytoene desaturase
    0.00035   17.8   9.2    0.00066   16.9   1.2    2.4  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    0.00052   16.7   4.8      0.047   10.2   0.4    2.8  3  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00058   15.9   3.1     0.0016   14.4   0.3    2.6  3  TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit
    0.00085   16.2   3.9     0.0046   13.7   0.1    2.9  3  TIGR00518 alaDH: alanine dehydrogenase
     0.0012   15.5   3.0      0.084    9.3   0.0    2.2  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
     0.0013   15.6   0.5     0.0013   15.6   0.3    2.2  2  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
     0.0018   15.0  13.6     0.0062   13.2   1.7    3.9  4  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0023   13.5   0.9     0.0023   13.5   0.6    2.1  3  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0024   14.8   7.3       0.08    9.8   0.5    3.0  3  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0043   13.9   1.1      0.014   12.2   0.2    2.0  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase
     0.0043   13.2   0.9       0.12    8.5   0.1    2.1  2  TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
     0.0058   13.6   1.5      0.022   11.7   0.4    2.0  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
  ------ inclusion threshold ------
      0.018   11.6   2.3      0.033   10.8   0.0    2.1  2  TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase
       0.13    9.1   8.2       0.12    9.3   1.0    3.0  3  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
          2    4.6   8.7      0.059    9.6   0.1    2.6  4  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit


Domain annotation for each model (and alignments):
>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  571.2   3.9    3e-174  3.1e-172       1     461 []      33     500 ..      33     500 .. 0.97

  Alignments for each domain:
  == domain 1    score: 571.2 bits;  conditional E-value: 3e-174
    TIGR01350   1 eydvvviGgGpgGYvaAiraaqlglkvalvek.eklGGtClnvGCiPtKalLksaevveelke.akelgieven.vkldlekllerkekvvkklvgGvkaLlkknkvevikGeaklldkkevevkkekke.kkleakniiiAtGseprelplk.leedekvvitseealelkevpeslvivGgGviGvEfasifaklGvkvtvielldrilpaldaevskvlkkklkkkgvkiltnakvtevekeedevv..veakkk.evetleaekvLvavGrkpnleelgleklgveldergaikvdeelrtnvpgiyaiGDvigklmLAhvAskegvvaaekiagkekseidykavPsviytePevasvGlteeqakeegievkvgkfpfaangkalaleetdGfvkvivdkktgeilGahivgaeaseliselalaveleltveelaktihpHPtlsEaikeaalaalgkaihv 461
                  +yd+vviGgGpgGYvaAi+aaqlg+k+a+ve+  +lGGtClnvGCiP+KalL+s++ ++++k+ ++++g+ +++ +++d++k++++k+k v+ l+gG+++L+kk++v+ +kG++k+++++ vev+ +++  ++l++kni+iAtGse++ lp   +++++  +++s++ale++++pe++++vGgGviG+E++s++a+lG++vtvie+ldrilp +d+e+ k  + +lkk+g k+  ++kv +   e+d vv  +e  k+ +v++ +++ vLv+ Gr+p +e+lgle +g+++d+ g+i+vd++++t vp++yaiGD+i+++mLAh+A++eg+ a+e+iag +  ++ y+a+P v+yt Peva vG+tee++ke+g++++vg+fpfaan++a+a + ++Gfvkv++dk+t++ilG+hi+g++a e+i+e+++a+e ++++e++a+t+h+HPtlsEa+kea+ ++++k+ih+
  MMETSP1061-20121228|26541_1  33 QYDLVVIGGGPGGYVAAIKAAQLGMKTACVEMrGRLGGTCLNVGCIPSKALLTSTHHYHDAKHhFADHGVVINGdISMDVDKMQDTKSKSVEGLTGGIEYLFKKYGVDYHKGKGKISGPNGVEVALNEGGsESLDTKNILIATGSEVTPLPPVpVDNEGGKIVDSTGALEIRKIPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRILPSNDNEIGKKFQTTLKKQGFKFNLKTKVVKSVVEDDGVVlsTEPAKGgDVKEEKYDVVLVSTGRRPYTEGLGLEDMGIQTDQLGRIEVDSHFKTAVPSVYAIGDCISGPMLAHKAEEEGIAAVETIAGFAG-HVCYDAIPGVVYTYPEVANVGKTEEELKEAGVAYNVGNFPFAANSRARANGSSEGFVKVLADKETDKILGVHIIGPNAGEMIAEAVIAIEYGASSEDMARTCHAHPTLSEAFKEACMDTYDKPIHF 500
                  69*****************************9889****************************9*******9999*************************************************97776569*****************99877999999*******************************************************************************988888888884544444459*******************************************************************************998.9***************************************************************************************************************************96 PP

>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.4   1.3  7.9e-111  8.3e-109       1     452 [.      34     492 ..      34     499 .. 0.92

  Alignments for each domain:
  == domain 1    score: 362.4 bits;  conditional E-value: 7.9e-111
    TIGR02053   1 ydlviiGsGaaafaaaikaaelgakvvlve.rGilGGtCvnvGCvPSKallraaevaklakkas...vgllaaevevdleelleqkkevveelRkeKYedvlesydavdllegkakfkdektvkvdl...gkevvgakrvliAtGar.pavPeipGLkeae.yltseelleldkipeslvviGggaiavElaqlfarlGsevtllqrserllkeeepeisaaveellaeeGvevvksakvkavskrnggkklvtvekn.dskkeveadellvAtGRkpnvdgLnLekvgvklderGeilvdeklrtsnpkiyAAGDvikglqlesvAakeGvvaAenalggaeakldlevlPkvvFtdPevAsvGlteeelakagievesrtvkleavpralinretrGliKlvaeketkkvlgvqvvaeeAaevineaalaikagltvddlidtlhvfltmaEglklAAla 452
                  ydlv+iG+G ++  aaikaa+lg k + ve rG lGGtC nvGC+PSKall+ ++ ++ ak+ +     +++ ++++d++++ ++k++ ve l     e + ++y +vd+ +gk+k+ +++ v+v+l   g e   +k++liAtG+  +  P++p  +e + +++s+ +le  kipe+++v+Ggg+i++E++ ++arlG evt+++  +r+l+++++ei++  + +l+++G ++  ++kv +  ++++g +l t   + +  ke + d +lv tGR+p ++gL+Le +g+++d+ G i+vd++ +t  p++yA GD+i+g++l + A +eG  aA+  + g   ++ ++++P vv+t PevA+vG teeel++ag+++++   +  a +ra++n++ +G++K+ a+ket k+lgv++++++A+e+i ea++ai+ g+  +d+++t+h ++t++E+ k A + 
  MMETSP1061-20121228|26541_1  34 YDLVVIGGGPGGYVAAIKAAQLGMKTACVEmRGRLGGTCLNVGCIPSKALLTSTHHYHDAKHHFadhGVVINGDISMDVDKMQDTKSKSVEGLT-GGIEYLFKKY-GVDYHKGKGKISGPNGVEVALnegGSESLDTKNILIATGSEvTPLPPVPVDNEGGkIVDSTGALEIRKIPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRILPSNDNEIGKKFQTTLKKQGFKFNLKTKVVKSVVEDDGVVLSTEPAKgGDVKEEKYDVVLVSTGRRPYTEGLGLEDMGIQTDQLGRIEVDSHFKTAVPSVYAIGDCISGPMLAHKAEEEGI-AAVETIAGFAGHVCYDAIPGVVYTYPEVANVGKTEEELKEAGVAYNVGNFPFAANSRARANGSSEGFVKVLADKETDKILGVHIIGPNAGEMIAEAVIAIEYGASSEDMARTCHAHPTLSEAFKEACMD 492
                  9****************************868*****************************998653345778999999999999999999996.56899*****.5******************98888999999**********83458****999987799*************************************************************************98776666666666544433303446677899**********************************************************99996.566666668899****************************************************************************************************************99874 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  255.9   2.9   1.2e-78   1.2e-76       2     442 ..      33     486 ..      32     489 .. 0.90

  Alignments for each domain:
  == domain 1    score: 255.9 bits;  conditional E-value: 1.2e-78
    TIGR01424   2 dydlfviGaGsGGvraarlaaalGakvaiaeed.lvGGtcvirGcvPkkllvya.sefaeeledakgyGwe.vekaefdwkkllakkdkeiarlsglykkllakagvellegraelvdantvevle...dgktytaekiliavGgrp.vkpelPGaela...itsdeafdletlPksilvvGgGyiavefagifrGlGvkvtllyrgekilrgfdddvraelaeeleerGirillktvlksiekvddGlkvtls.....kdeeivadvvllatGrvPnvkglgleaaGvelndagaiavdeysrtsvpsiyavGdvtdrinltPvaikeaaafaetefknnptkadhdlvatavfsqPevatvGlseeearekftddievyraefrPmkatlsGrqekillklvvdekddkvlGahvvGedaaeiiqlvaialkaGatkkdfdstvavhPssaeel 442
                   ydl viG+G GG  aa  aa+lG k a +e   ++GGtc+  Gc+P k l+ +  ++ +  +  +++G   +++  +d +k+  +k k +  l g    l++k gv+  +g++++ ++n vev      ++++ +++ilia+G+   + p +P  + +   + s  a++++++P++++vvGgG i+ e+ ++++ lG++vt +   ++il   d+++ ++ ++ l+++G +  lkt + +   +ddG++ ++      + +e   dvvl++tGr P+++glgle+ G+++++ g i vd + +t+vps+ya+Gd      l+  a +e+ a +et   +   ++ +d +   v++ Peva vG +eee +e+     +v + +f     + +      ++k++ d+++dk+lG+h++G++a+e+i  + ia+  Ga+ +d+ +t+  hP+++e +
  MMETSP1061-20121228|26541_1  33 QYDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRgRLGGTCLNVGCIPSKALLTStHHYHDAKHHFADHGVViNGDISMDVDKMQDTKSKSVEGLTGGIEYLFKKYGVDYHKGKGKISGPNGVEVALnegGSESLDTKNILIATGSEVtPLPPVPVDNEGgkiVDSTGALEIRKIPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRILPSNDNEIGKKFQTTLKKQGFKFNLKTKVVKSVVEDDGVVLSTEpakggDVKEEKYDVVLVSTGRRPYTEGLGLEDMGIQTDQLGRIEVDSHFKTAVPSVYAIGDCISGPMLAHKAEEEGIAAVETI-AGFAGHVCYDAIPGVVYTYPEVANVGKTEEELKEAG-VAYNVGNFPFAANSRARANGSSEGFVKVLADKETDKILGVHIIGPNAGEMIAEAVIAIEYGASSEDMARTCHAHPTLSEAF 486
                  59**************************9997538************887665505677777788999*98789*************************************************987543345999**********9767888887654334378999******************************************************************9998766666778896666655644444566789******************************************************************9995.56777899***********************98876.77788888888877777666777899***************************************************9987 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.9   3.6   3.8e-68     4e-66       2     446 ..      33     486 ..      32     489 .. 0.90

  Alignments for each domain:
  == domain 1    score: 221.9 bits;  conditional E-value: 3.8e-68
    TIGR01421   2 eydylviGGGsGGiasarraaeyGakallveek.klGGtcvnvGcvPkkvmwyaaslaelle.daadyGfksekenkfnfkelkekrdayvdrlngiyqknlekekvelieGyaeftkdetvevngke.....ytakhiliatGgkpsipeniPGaelg...ldsdgffaleelPkrvvivGaGyiavelaGvlhglGsktdlvirrervlrsfdelisekvveelekaglevhklskvvkvektvegklvitledg....keiedvdeliwaiGrkpntkdlglekvgvkldekgyikvdeyqntnvegiyalGdvvGkveltPvaiaaGrklserlfegkedakldyenvPtvvfshPeigtvGltekeaiekyGkenvkvykssftamyyaltkekqksrlklvcagkeekvvGlhiiGlgvdellqGfavaikmGatkadfdntvaihPtsseel 446
                  +yd++viGGG GG  +a +aa++G k++ ve + +lGGtc+nvGc+P k +  ++++ +  + + ad+G+  + + +++  ++++ + + v+ l g  +  ++k  v+  +G  + ++ + vev  +e     + +k iliatG++ + +  +P  + g   +ds g +++ ++P+++++vG G i++e+  v   lG++  ++   +r+l s d+ i +k    l+k+g++   ++kvvk     +g +v   e +     + e+ d ++ ++Gr+p t++lgle++g+++d+ g i+vd +  t+v+++ya+Gd +    l+  a + G    e + +     ++ y+ +P vv+++Pe++ vG te+e +++ G     v +  f+a   a ++  ++  +k+++  + +k++G+hiiG  + e++    +ai  Ga+  d+  t   hPt se +
  MMETSP1061-20121228|26541_1  33 QYDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRgRLGGTCLNVGCIPSKALLTSTHHYHDAKhHFADHGVVINGDISMDVDKMQDTKSKSVEGLTGGIEYLFKKYGVDYHKGKGKISGPNGVEVALNEggsesLDTKNILIATGSEVTPLPPVPVDNEGgkiVDSTGALEIRKIPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRILPSNDNEIGKKFQTTLKKQGFKFNLKTKVVKSVVEDDG-VVLSTEPAkggdVKEEKYDVVLVSTGRRPYTEGLGLEDMGIQTDQLGRIEVDSHFKTAVPSVYAIGDCISGPMLAHKAEEEGIAAVETIAGFA--GHVCYDAIPGVVYTYPEVANVGKTEEE-LKEAGVA-YNVGNFPFAANSRARANGSSEGFVKVLADKETDKILGVHIIGPNAGEMIAEAVIAIEYGASSEDMARTCHAHPTLSEAF 486
                  7******************************8758*************99988887766554399********9889***********************************************87777777799**********998888899877663446999*****************************************************************99888777775555555.3333333233444667899*************************************************************9999999987765..5789********************988.6777764.4677889*********************************************************************987 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.2   0.5   2.7e-65   2.8e-63       2     448 ..      33     489 ..      32     492 .. 0.82

  Alignments for each domain:
  == domain 1    score: 212.2 bits;  conditional E-value: 2.7e-65
    TIGR03452   2 hydliiiGtGsGn...silderfedkriaivekGtfGGtclnvGciptkmfvyaaevakevke.sarlgi..daeidsvrwpdivsrvfedridpiaasGeeyrrgdktpnidvyesharfvgrktlrt....edgeeitadqvviaaGsrpv.ipea.iaesgvryytnedimrlpelpeslvivGgGyialefahvfsalGtkvtlvarsekllrkldediserfte.lakkkfdvrlgrnvtaaeqdddgvtleld..dGstv...eadvllvatGrvpngdlldaeaaGvevdedgrvkvdeyqrtsaegvfalGdvsspyqlkhvanaearvvkhnllkdedlkkadhdfvpaavftdpqiatvGlteqeareaGlditvkvqdygdvayGwamedteglakliadkdtGkllGahiiGaqassliqqlitalafgldarelarkqywihpalpevvena 448
                  +ydl++iG G G    +i   +   k+  +  +G +GGtclnvGcip+k  + +++  ++ k+  a +g+  +++i  ++ +++++   ++ ++   ++G ey  ++    +d ++ + +  g++ +++    + +e++ +++++ia+Gs  + +p++ + + g +   +   + + ++pe++ +vGgG+i le+  v+  lG++vt++   +++l   d++i ++f++ l k+ f+ +l+++v+++  +ddgv+l+++  +G +v   + dv+lv+tGr p ++ l +e  G+++d+ gr++vd + +t++ +v+a+Gd  s  +l h a++e  +  + ++  +   ++ +d +p  v+t p +a+vG te+e +eaG   +v    ++  +   a   +eg++k++adk+t k+lG hiiG++a  +i + + a+ +g +++++ar     hp+l+e  ++a
  MMETSP1061-20121228|26541_1  33 QYDLVVIGGGPGGyvaAIKAAQLGMKTACVEMRGRLGGTCLNVGCIPSKALLTSTHHYHDAKHhFADHGVviNGDIS-MDVDKMQD-TKSKSVEG-LTGGIEYLFKK--YGVDYHKGKGKISGPNGVEValneGGSESLDTKNILIATGSEVTpLPPVpVDNEGGKIVDSTGALEIRKIPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRILPSNDNEIGKKFQTtLKKQGFKFNLKTKVVKSVVEDDGVVLSTEpaKGGDVkeeKYDVVLVSTGRRPYTEGLGLEDMGIQTDQLGRIEVDSHFKTAVPSVYAIGDCISGPMLAHKAEEEGIAAVETIAGFAG--HVCYDAIPGVVYTYPEVANVGKTEEELKEAGVAYNVGNFPFAANSRARANGSSEGFVKVLADKETDKILGVHIIGPNAGEMIAEAVIAIEYGASSEDMARTC-HAHPTLSEAFKEA 489
                  7*********99722144555555666666669****************9998876655443312333431133332.22222222.22223433.46899998877..89**********97765443111155666************8543666537788999999**********************************************************75166677*********************99744455551115689*************************************************************9888888876654..567899*************************999999999999999999999***********************************************975.69******98777 PP

>> TIGR01438  TGR: thioredoxin and glutathione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.1   1.5   6.5e-62   6.9e-60       2     467 ..      33     488 ..      32     494 .. 0.86

  Alignments for each domain:
  == domain 1    score: 201.1 bits;  conditional E-value: 6.5e-62
    TIGR01438   2 dydliviGgGsGGlaaakeaaklgakvllldfvkptpqGtkwGiGGtcvnvGcipkklmhqaallGkalk.dskkyGwnveeqvkhdweklskavqdrikslnfsyrvalrekkvkyinayaelvdkdvikatdkkkkeeilsakrvliatGlrpkypddieGakels..itsddlfslkkvpGktlvvGasyvalecaGflaalgldvtvl.vrsillrGfdqdcavkvkeylkeqGvkfkeqvlpkkvekveakvlvkf...tdkdntieeeydtvlyaiGrkadlkklnlenvgvkvnkksgkiladelertnvpsiyavGdivedkleltpvaikaGklladrlfkdskeivdyenvpttvftpleygavGlseekavekyGeenvevfhseftpleysvpsrkdsskcyakvvclkdedervvGlhfvGpnagevtqGfavalrvgvkkkdldntigihpvsaeefvk 467
                  +ydl+viGgG+GG  aa +aa+lg k + +++        +  +GGtc nvGcip k +  +++  +  k +  ++G  ++ ++  d +k+ ++  + ++ l  +    +++  v+y  + +++ +++ ++   +++  e l +k++liatG     +  ++ ++e +  + s   + ++k+p k  vvG++ + le     a lg +vtv+     +l   d+++ +k +  lk+qG kf  + ++ k   ve+  +v +   +  ++  ee+yd vl + Gr++ +++l+le++g+++++  g+i +d   +t+vps+ya+Gd + + + l+  a + G + a     +    v y+ +p  v+t  e + vG +ee+  e     nv  f         s ++ + ss  ++kv+   +e ++++G+h++Gpnage++    +a+  g + +d+  t   hp+ +e f +
  MMETSP1061-20121228|26541_1  33 QYDLVVIGGGPGGYVAAIKAAQLGMKTACVEM--------RGRLGGTCLNVGCIPSKALLTSTHHYHDAKhHFADHGVVINGDISMDVDKMQDTKSKSVEGLTGGIEYLFKKYGVDYHKGKGKISGPNGVEVALNEGGSESLDTKNILIATGSEVTPLPPVPVDNEGGkiVDSTGALEIRKIPEKMAVVGGGVIGLEMGSVWARLGAEVTVIeFLDRILPSNDNEIGKKFQTTLKKQGFKFNLKTKVVKSV-VEDDGVVLStepAKGGDVKEEKYDVVLVSTGRRPYTEGLGLEDMGIQTDQ-LGRIEVDSHFKTAVPSVYAIGDCISG-PMLAHKAEEEG-IAAVETIAGFAGHVCYDAIPGVVYTYPEVANVGKTEEELKEAGVAYNVGNFP----FAANSRARANGSSEGFVKVLAD-KETDKILGVHIIGPNAGEMIAEAVIAIEYGASSEDMARTCHAHPTLSEAFKE 488
                  7***********************99988764........5569***********99777777766666648899***99999*********************************************************************9866655677777765226677788899******************************98345778999*******************98776665533.3333333330004445667899*************************986.79**********************87.56899888888.667777788888999**********************988776666665543....223344455567899***8865.6789*********************************************976 PP

>> TIGR01423  trypano_reduc: trypanothione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.8   2.3   7.1e-49   7.4e-47       3     467 ..      33     486 ..      31     500 .. 0.85

  Alignments for each domain:
  == domain 1    score: 157.8 bits;  conditional E-value: 7.1e-49
    TIGR01423   3 aydlvvigagsggleagwnaaslykkrvavvdlqkvhgppfyaalggtcvnvgcvpkklmvtga.qymdtlresagfgweldaesvkanwkaliaaknkavldindsyedmfkdteglefflgfgaledknvvlvresadpkskvkerldaeyillatgswpqmlk.iegie...lcissneafyleeapkrvltvgggyisvefagifnaykavggkvdlayrndmilrgfdselrkeltkqlvangidvrtnenpakveknadgskhvvf..esg..keldvdvvmlaigrlprsqtlqldkvgveladkgaikvdeysktnvdniyaigdvtdrvmltpvainegaavvdtvfaskprktdhtkvasavfsippigvcglveeeaakkyekvavyessftplmhnisgskykkfvvkivtdhadgevlgvhllgdsspeiiqavaiclklnakisdfyntigvhptsaeel 467
                   ydlvvig g gg  a  +aa l  k  a v+++          lggtc+nvgc+p k ++t + +y d     a  g  ++   +  +   +  +k k+v ++    e +fk   g+++++g g +   n v v      +    e ld++ il+atgs    l  ++ ++   + + s  a+ + + p+++ +vggg i +e+  ++      g +v+++   d il   d e+ k++   l+ +g +   + +  k   + dg    +   + g  ke  +dvv+++ gr p ++ l l+ +g++  + g i+vd++ kt v+ +yaigd     ml+  a +eg a v+t+ +       +  +   v++ p +  +g +eee         v +  f+      +        vk+++d+   ++lgvh++g  + e+i    i++  +a   d+  t   hpt +e +
  MMETSP1061-20121228|26541_1  33 QYDLVVIGGGPGGYVAAIKAAQLGMKT-ACVEMR--------GRLGGTCLNVGCIPSKALLTSThHYHDAKHHFADHGVVING-DISMDVDKMQDTKSKSVEGLTGGIEYLFKK-YGVDYHKGKGKISGPNGVEVAL----NEGGSESLDTKNILIATGSEVTPLPpVPVDNeggKIVDSTGALEIRKIPEKMAVVGGGVIGLEMGSVWA---RLGAEVTVIEFLDRILPSNDNEIGKKFQTTLKKQGFKFNLKTKVVKSVVEDDGVVLSTEpaKGGdvKEEKYDVVLVSTGRRPYTEGLGLEDMGIQTDQLGRIEVDSHFKTAVPSVYAIGDCISGPMLAHKAEEEGIAAVETIAGFAGH-VCYDAIPGVVYTYPEVANVGKTEEELKEAGVAYNVGNFPFAANSRARANGS-SEGFVKVLADKETDKILGVHIIGPNAGEMIAEAVIAIEYGASSEDMARTCHAHPTLSEAF 486
                  69*********************9875.666665........469***********99887765279999999*****99876.588899999*******************96.6***************998864....455679*************8666532333321226799*************************998865...6899*******************************99988888888888889876554311223337889************************************************************************887665.5677899*****************986554444444444444433333333.345689*************************************************98854 PP

>> TIGR03385  CoA_CoA_reduc: CoA-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2      0.86        91       2      22 ..      36      56 ..      35      63 .. 0.85
   2 !   94.2   0.8   1.5e-29   1.6e-27     148     419 ..     206     474 ..     193     485 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.86
    TIGR03385  2 ivivGgvaaGasaAsrvrRLk 22
                 +v++Gg+ +G  aA ++  L 
  MMETSP1061-20121228|26541_1 36 LVVIGGGPGGYVAAIKAAQLG 56
                 79************9988875 PP

  == domain 2    score: 94.2 bits;  conditional E-value: 1.5e-29
    TIGR03385 148 kvekvvviGgGyiglemvealkergkevtliersekilnkllDeeiakiveeelekkeielrlneev.ksvegeekvevlt......sgkvyqaDlvilavGvkPnsel..ikssqlklgkkGaikvnekfqtsveniyaiGDvaesknivtkkeelvPlAwaanklgsivaeniaGk..diefkGvlGtsivkfldltiaktGltenelkklnidyktve..vkakakanYYPgakdlllklivekdtkkilgaqavGkegvlkRidvlaaaikakltvkdlte 419
                    ek++v+GgG iglem     + g evt+ie  ++i  ++ D+ei+k  +  l+k++ +++l+ +v ksv +++ v+  t      + k++++D+v++++G +P +e   ++++++++++ G i v+ +f+t+v+ +yaiGD++              lA  a+  g  + e iaG   ++ +  + G   +     ++a++G te+elk  ++ y++      a+++a+   g+++ ++k++++k+t kilg+ ++G + + + i  + +ai+ ++  +d++ 
  MMETSP1061-20121228|26541_1 206 IPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRI-LPSNDNEIGKKFQTTLKKQGFKFNLKTKVvKSVVEDDGVVLSTepakggDVKEEKYDVVLVSTGRRPYTEGlgLEDMGIQTDQLGRIEVDSHFKTAVPSVYAIGDCISGPM----------LAHKAEEEGIAAVETIAGFagHVCYDAIPGVVYT---YPEVANVGKTEEELKEAGVAYNVGNfpFAANSRARA-NGSSEGFVKVLADKETDKILGVHIIGPN-AGEMIAEAVIAIEYGASSEDMAR 474
                  46899********************************.7899********************9987527888887775433222222457899************999524799******************************97643..........7999999999999****97677888877775443...4589************99999886511577777775.699999*********************9.88999999999999999999876 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0018      0.19     122     175 ..      18      68 ..      11      77 .. 0.80
   2 !   64.7   0.2   1.2e-20   1.3e-18      99     279 ..     170     350 ..     157     370 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0018
    TIGR02374 122 fvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapll 175
                  +v+r + ++ a    a +  + +viGgG  G  aa    +lG+++  +e+  +l
  MMETSP1061-20121228|26541_1  18 TVWRSFSNTTATL--ADQ-YDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRL 68 
                  5677776665544..334.4679**************************98776 PP

  == domain 2    score: 64.7 bits;  conditional E-value: 1.2e-20
    TIGR02374  99 kLilatGsy.pfilPipGaDkkgvfvyrtieDldaleaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielapllmakqlDqtagrlLqrelekkGltvlleketveivkes.vekaer..lrfkDGssleadlvvlaaGirPrde.Laa.eaGlkvndrrGiivndsmqtsdPdiyavGecae 279
                  ++++atGs  + ++P+p  ++ g     +i D      + k  +k av+GgG++GLe  +   +lG +v vie+  +++    D+  g+ +q++l+k+G ++ l+++ v++v e+ + + ++   +  D ++ + d+v++++G rP +e L+  + G++ ++ + i v+ + +t  P +ya+G+c +
  MMETSP1061-20121228|26541_1 170 NILIATGSEvTPLPPVPVDNEGG-----KIVDSTGALEIRKIPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRILPSN-DNEIGKKFQTTLKKQGFKFNLKTKVVKSVVEDdGVVLSTepAKGGDVKEEKYDVVLVSTGRRPYTEgLGLeDMGIQTDQLGRIEVDSHFKTAVPSVYAIGDCIS 350
                  56789999614577777544443.....344555555677888999*********************************986.888999***************9999887766635444440044455566779***********9876775269*****99**********************75 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   1.1e-09   1.2e-07     189     255 ..       9      78 ..       2     131 .. 0.72
   2 !   36.9   0.8   3.3e-12   3.5e-10     353     489 ..     208     351 ..     109     356 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 1.1e-09
    TIGR03140 189 aellekleekaaek.aeeaeeekekydvlvvGgGPagaaaaiyaarkGlkvalva..eriGGqvkdtvgi 255
                  + + ++ ++++ ++ ++ +++  ++yd++v+GgGP g  aai aa+ G+k+a v    r+GG   +   i
  MMETSP1061-20121228|26541_1   9 NSIASRTRSTVWRSfSNTTATLADQYDLVVIGGGPGGYVAAIKAAQLGMKTACVEmrGRLGGTCLNVGCI 78 
                  555555555554444677778899*****************************97225799988776555 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 3.3e-12
    TIGR03140 353 kkvaviGGGnsGieaaidlaGivehvtvlefadel..kadkvlveklks.lsnvdiltsaktkeivg..dgdkvtglkykdrsseeekkleldGvfvqiGlvpntefl..kda.velnrrGeividergrtsvkGifaaGdvttv 489
                   k+av+GGG  G+e     a +  +vtv+ef+d++    d+ + +k ++ l+      + ktk +++  ++d v  l+ +  + ++ k+ + d v+v  G  p te l  +d+ +++++ G i++d++ +t v+ ++a Gd+ + 
  MMETSP1061-20121228|26541_1 208 EKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRIlpSNDNEIGKKFQTtLKKQGFKFNLKTKVVKSvvEDDGV-VLSTEPAKGGDVKEEKYDVVLVSTGRRPYTEGLglEDMgIQTDQLGRIEVDSHFKTAVPSVYAIGDCISG 351
                  479******************************98444677777776651455556666666655431133333.47788899999*******************975337878****************************765 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   8.8e-07   9.2e-05       1      32 [.      34      65 ..      34     117 .. 0.90
   2 !   37.6   0.1   2.1e-12   2.3e-10     143     296 ..     209     369 ..     204     372 .. 0.80
   3 !    6.0   0.1    0.0094      0.99     219     291 ..     395     468 ..     389     476 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 8.8e-07
    TIGR01292  1 ydviiiGaGpaGltaaiYaaranlktlliegk 32
                 yd+++iG+Gp+G+ aai aa+ ++kt+++e  
  MMETSP1061-20121228|26541_1 34 YDLVVIGGGPGGYVAAIKAAQLGMKTACVEMR 65
                 79**************************9954 PP

  == domain 2    score: 37.6 bits;  conditional E-value: 2.1e-12
    TIGR01292 143 evavvGggdsAveealyLskiakkVtlvhrrdklr..aekillerlk...knekievllnst.veeikGdekvesvkikntktkeeeelkvdgvFiaiGhepntell..kel.leldeegyivvdeemrTsveGvfaaGDvrdkslrQvvtaagdGaiAalsv 296
                  ++avvGgg   +e   + ++++ +Vt++   d++    ++ + ++++   k++  ++ l+++ v+ +++d+ v  ++ +  k ++ +e k d v +  G +p te l  +++ +++d+ g i vd++ +T v+ v+a GD+ +   + + +a  +G++A+ ++
  MMETSP1061-20121228|26541_1 209 KMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRILpsNDNEIGKKFQttlKKQGFKFNLKTKvVKSVVEDDGV-VLSTEPAKGGDVKEEKYDVVLVSTGRRPYTEGLglEDMgIQTDQLGRIEVDSHFKTAVPSVYAIGDCIS-GPMLAHKAEEEGIAAVETI 369
                  789*************************988877511344555554411144577777766514566666655.46667789999*******************976225669*****************************9.8889999999999998776 PP

  == domain 3    score: 6.0 bits;  conditional E-value: 0.0094
    TIGR01292 219 tkeeeelkvdgvFiaiGhepntellkelleldeegyivvdeemrT.sveGvfaaGDvrdkslrQvvtaagdGai 291
                   k+eeelk +gv + +G  p  +  +   + ++eg+++v    +T ++ Gv+  G    +++  +v a+  Ga 
  MMETSP1061-20121228|26541_1 395 GKTEEELKEAGVAYNVGNFPFAANSRARANGSSEGFVKVLADKETdKILGVHIIGPNAGEMIAEAVIAIEYGAS 468
                  567899*********************************99977747*********************999986 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.7   0.1   1.4e-08   1.5e-06     380     464 ..      34     120 ..       9     132 .. 0.82
   2 !   22.5   0.1   6.7e-08   7.1e-06     364     480 ..     192     314 ..     186     327 .. 0.80
   3 ?    3.6   0.0     0.035       3.6     610     639 ..     333     363 ..     319     369 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.7 bits;  conditional E-value: 1.4e-08
    TIGR03997 380 kkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvklaaklpgreelael..vrdlaselkelgvevklGveadaelvlaekP 464
                    ++v+GgGP+G  aa++aa+ G +   +e   +lGG    +  +p ++ l++    +d +++ ++ gv ++   + d +++++ k 
  MMETSP1061-20121228|26541_1  34 YDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLGGTCLNVGCIPSKALLTSThhYHDAKHHFADHGVVINGDISMDVDKMQDTKS 120
                  5689******************************************99999876114567788889999988888888887777665 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 6.7e-08
    TIGR03997 364 GrelkeavtlkkarrrkkvlvvGgGPaGleaaataarrGhrvtlle........reeelGGqvklaaklpgreelaelvrdlaselkelgvevklGveadaelvlaekPDavvlatGsrparpdl 480
                  G+ +  + +l+  + + k+ vvGgG  Gle     ar G +vt++e        +++e+G + +++ k  g  +++   + ++s +++ gv +++   a+ ++v++ek D+v+++tG rp    l
  MMETSP1061-20121228|26541_1 192 GKIVDSTGALEIRKIPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEfldrilpsNDNEIGKKFQTTLKKQGF-KFNLKTKVVKSVVEDDGVVLST-EPAKGGDVKEEKYDVVLVSTGRRPYTEGL 314
                  55566777888888999***************************9855544444577888888888777543.4555566677788899997765.68999******************987665 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.035
    TIGR03997 610 lslkdkvlevyriGDcla.PRrveaaileGe 639
                  +++k  v+ vy iGDc++ P  +++a  eG 
  MMETSP1061-20121228|26541_1 333 SHFKTAVPSVYAIGDCISgPMLAHKAEEEGI 363
                  5688999**********75888999988885 PP

>> TIGR03169  Nterm_to_SelD: pyridine nucleotide-disulfide oxidoreductase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.12        12     131     163 ..      19      51 ..       9      67 .. 0.77
   2 ?    0.2   0.0      0.68        72     178     245 ..     109     181 ..      93     198 .. 0.72
   3 !   45.3   0.1   1.4e-14   1.4e-12     134     297 ..     196     367 ..     154     370 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.12
    TIGR03169 131 aweellekakaseetkslavvGgGaagvElala 163
                   w+++ + +++  ++ +l+v+GgG +g   a+ 
  MMETSP1061-20121228|26541_1  19 VWRSFSNTTATLADQYDLVVIGGGPGGYVAAIK 51 
                  57777777777788889*********9655554 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.68
    TIGR03169 178 sla..seakllqalsakvrklvkrllakrgievlekeevtevede...alllaegetleadavllatgakapa 245
                  s+   + ++  +++ +++   ++ l++k g++ ++ +   +++++   al  +  e+l++  +l+atg++  +
  MMETSP1061-20121228|26541_1 109 SMDvdKMQDTKSKSVEGLTGGIEYLFKKYGVDYHKGKGKISGPNGvevALNEGGSESLDTKNILIATGSEVTP 181
                  5544455556666667777778888999999999999999988777444444556778888999999987665 PP

  == domain 3    score: 45.3 bits;  conditional E-value: 1.4e-14
    TIGR03169 134 ellekakaseetkslavvGgGaagvElalalrkrlkkrglkaevsla.seakllqalsakvrklvkrllakrgievlekeevte..vede.......alllaegetleadavllatgakapa...wLaesglsldedGflavkktLqslshpevFaaGDcav..ikeaprpkaGVyAVr 297
                   +  +++ ++ ++++avvGgG+ g+E+  +    +++ g++  v+++    ++l+   +++ k+++ +l+k+g +   k++v +  ved+         + ++ ++ + d+vl++tg ++++    L++ g+++d+ G+++v++++++ + p+v+a GDc++  + +++ ++ G+ AV 
  MMETSP1061-20121228|26541_1 196 DSTGALEIRKIPEKMAVVGGGVIGLEMG-S---VWARLGAE--VTVIeFLDRILPSNDNEIGKKFQTTLKKQGFKFNLKTKVVKsvVEDDgvvlstePAKGGDVKEEKYDVVLVSTGRRPYTeglGLEDMGIQTDQLGRIEVDSHFKT-AVPSVYAIGDCISgpMLAHKAEEEGIAAVE 367
                  44445555666789************74.4...44444544..555546789**********************9998888765224555555544444448889999************974335*********************9.99*********8755889999999999995 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   7.6e-05     0.008     532     615 ..      28     113 ..       9     130 .. 0.73
   2 !    9.4   0.1   0.00032     0.033     535     568 ..     205     238 ..     189     250 .. 0.86
   3 !   17.7   0.0   9.5e-07    0.0001     753     835 ..     286     369 ..     249     377 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.6e-05
    TIGR03315 532 qlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvkni..iPefri.saeviqkdle.lvkkkGvefklGvsedltvd 615
                  ++ +++  + viG+GP G  a+   a+ G++ + +e + + gG++ n+  iP   + ++    +d +   +++Gv ++  +s  ++vd
  MMETSP1061-20121228|26541_1  28 ATLADQYDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLGGTCLNVgcIPSKALlTSTHHYHDAKhHFADHGVVINGDIS--MDVD 113
                  4556788999***********************************9976688655414444455554145667776665443..3444 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.00032
    TIGR03315 535 sekhkvaviGaGPaGlsagyflaraGlpvtvfek 568
                  +  +k+av+G+G  Gl  g + ar G +vtv+e 
  MMETSP1061-20121228|26541_1 205 KIPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEF 238
                  555799*************************985 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 9.5e-07
    TIGR03315 753 rpvetgelveleadaviaavGeqvdtel..lkklgieldekgkvvvneetketsvtnvfviGdakkGPativeaiadgrkaakai 835
                  +p + g++ e + d v+++ G++  te   l+ +gi++d+ g+++v+++   t v+ v+ iGd   GP    +a  +g +a ++i
  MMETSP1061-20121228|26541_1 286 EPAKGGDVKEEKYDVVLVSTGRRPYTEGlgLEDMGIQTDQLGRIEVDSH-FKTAVPSVYAIGDCISGPMLAHKAEEEGIAAVETI 369
                  577788888889999******998887523799***************9.99****************99999988888888777 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.1    0.0057       0.6     271     307 ..      32      68 ..       6      82 .. 0.74
   2 !   27.4   0.5   2.8e-09   2.9e-07     273     445 ..     208     369 ..     202     372 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0057
    TIGR01316 271 vgkkvvviGgGntavdaartalrlGaevhvvyrrtre 307
                       vviGgG     aa+ a +lG+++ +v  r+r 
  MMETSP1061-20121228|26541_1  32 DQYDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRL 68 
                  4456788888888888888888888888888877775 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 2.8e-09
    TIGR01316 273 kkvvviGgGntavdaartalrlGaevhvvyrrtredmtaree....eikhaeeeGvkfefllqpveviGdeeGevkavkfektelqeerdsgekrkvpvtdeevkleadavivaiGqea..nkiiaedsslktskrGtivvdedletsieGvfaGGdvirGeatvilalgdGkraakai 445
                   k+ v+GgG + ++      rlGaev+v+    r   +  +e        ++++G kf+  ++ v+ + +++G v +      e+ +  d +e+            + d v+v+ G+++  + +  ed +++t + G i+vd +++t+++ v+a Gd i G     +a  +G  a ++i
  MMETSP1061-20121228|26541_1 208 EKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRILPSNDNEigkkFQTTLKKQGFKFNLKTKVVKSVVEDDGVVLST-----EPAKGGDVKEE------------KYDVVLVSTGRRPytEGLGLEDMGIQTDQLGRIEVDSHFKTAVPSVYAIGDCISGPMLAHKAEEEGIAAVETI 369
                  67899**********************998888865555444111034457788999999999999999888866443.....33333333322............45889999999973256999***********************************988888888887777666 PP

>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.5   0.00053     0.055       1      29 [.      35      63 ..      35      74 .. 0.91
   2 ?    1.9   0.1      0.17        18     136     166 ..      82     113 ..      72     124 .. 0.64
   3 !   28.0   0.0   1.8e-09   1.9e-07     151     293 ..     206     353 ..     154     371 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00053
    TIGR04018  1 dviiiGaGPiGlaaaieakkaglsyliie 29
                 d+++iG+GP G  aai+a + g+++  +e
  MMETSP1061-20121228|26541_1 35 DLVVIGGGPGGYVAAIKAAQLGMKTACVE 63
                 799*********************99998 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.17
    TIGR04018 136 dlpkvshyykea.hpyvkqkvvvvGgknsavd 166
                   l   +h+y++a h+++++ vv+ G  +  vd
  MMETSP1061-20121228|26541_1  82 ALLTSTHHYHDAkHHFADHGVVINGDISMDVD 113
                  55555666666527777777777776555565 PP

  == domain 3    score: 28.0 bits;  conditional E-value: 1.8e-09
    TIGR04018 151 vkqkvvvvGgknsavdaalelyrkgaevtlvvrgeelsekvkyWvkpdlenrikegkikalfesevke..ieeesvtletp...egeveeiendfvlaltGyrpdlel..leklgveleedekipvydeetmEtnveglylaGvvaagle 293
                  + +k++vvGg     +      r gaevt++   +++  +    +  +++  +k++  k+ ++++v +  +e++ v+l+t+    g+v+e + d vl+ tG rp +e   le++g+++++  ++  +d +++ t v+++y  G + +g  
  MMETSP1061-20121228|26541_1 206 IPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRILPSNDNEIGKKFQTTLKKQGFKFNLKTKVVKsvVEDDGVVLSTEpakGGDVKEEKYDVVLVSTGRRPYTEGlgLEDMGIQTDQL-GRIEVD-SHFKTAVPSVYAIGDCISGPM 353
                  55789999*999999999999*******************************************997545788999999875556899999*************99862357788877776.455555.569***********9888754 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.1   0.0    0.0088      0.92     146     181 ..      36      71 ..       5      94 .. 0.79
   2 !    8.4   0.0    0.0018      0.19     142     178 ..     206     242 ..     198     244 .. 0.92
   3 !   19.6   0.0   6.8e-07   7.1e-05     367     474 ..     260     369 ..     250     375 .. 0.80

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.0088
    TIGR01317 146 vavvGsGPaGlaaadqlnraGhtvtvferedrvGGl 181
                  + v+G GP G  aa + ++ G + +  e   r GG 
  MMETSP1061-20121228|26541_1  36 LVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLGGT 71 
                  568899999999999999999998888998898884 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.0018
    TIGR01317 142 tGkkvavvGsGPaGlaaadqlnraGhtvtvferedrv 178
                    +k+avvG G  Gl      +r G +vtv e  dr+
  MMETSP1061-20121228|26541_1 206 IPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRI 242
                  56899***************************99996 PP

  == domain 3    score: 19.6 bits;  conditional E-value: 6.8e-07
    TIGR01317 367 deGkvkavrtvevelkkdedGkyelee.vpgse.evleadlvllalGfvg.peqallddlgvdkdergnikaeldesetsidGvfaaGdarrGqslivwaineGreaarav 474
                  ++G   +++t  v+ + ++dG+   +e  +g + ++ + d+vl++ G    +e   l+d+g++ d+ g+i+ + + + t+++ v+a Gd+  G  l   a +eG +a +++
  MMETSP1061-20121228|26541_1 260 KQGFKFNLKTKVVKSVVEDDGVVLSTEpAKGGDvKEEKYDVVLVSTGRRPyTEGLGLEDMGIQTDQLGRIEVDSHFK-TAVPSVYAIGDCISGPMLAHKAEEEGIAAVETI 369
                  567777899999999999999976655144544256678********9862555689*************7666555.*******************99999998887765 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.11        12     141     186 ..      33      80 ..      11     115 .. 0.80
   2 !    8.1   0.1    0.0018      0.19     137     174 ..     203     240 ..     199     279 .. 0.82
   3 !   19.1   0.0   8.4e-07   8.8e-05     386     462 ..     297     370 ..     283     374 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.11
    TIGR01318 141 gkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGG.lltfG.ips 186
                  +  + viG+Gp G   a   a+ G+k+   +   ++GG  l+ G ips
  MMETSP1061-20121228|26541_1  33 QYDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLGGtCLNVGcIPS 80 
                  456789*******************99999999999883466664565 PP

  == domain 2    score: 8.1 bits;  conditional E-value: 0.0018
    TIGR01318 137 vkktgkrvaviGaGpaGlacadvlaraGvkvvvfdryp 174
                  ++k  +++av+G+G  Gl    v ar G +v+v +  +
  MMETSP1061-20121228|26541_1 203 IRKIPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLD 240
                  778889**************************986544 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 8.4e-07
    TIGR01318 386 eadvviiafGfephame.wlaehgikldskGrivaaeeselayqtsnpkifaGGdivrGadlvvtavaeGrkaaegil 462
                  + dvv+++ G +p +    l++ gi++d+ Gri ++     +++t+ p ++a Gd++ G  l   a +eG  a e i 
  MMETSP1061-20121228|26541_1 297 KYDVVLVSTGRRPYTEGlGLEDMGIQTDQLGRIEVD----SHFKTAVPSVYAIGDCISGPMLAHKAEEEGIAAVETIA 370
                  579*********98876269**************99....89****************************99999885 PP

>> TIGR03143  AhpF_homolog: putative alkyl hydroperoxide reductase F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1     4e-06   0.00042       4      92 ..      33     119 ..      30     130 .. 0.83
   2 !   11.3   0.0   0.00019      0.02     146     282 ..     210     348 ..     161     365 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 4e-06
    TIGR03143   4 lydlvviGgGpaglsaGiyagraklkvliie.kdelGGqititsevvnyPgireitGeelmqemrkqaqdfgvkflqaevldvdlegdik 92 
                   ydlvviGgGp g  a i a++  +k+  +e +++lGG      +v   P+    t ++  ++ ++   d gv    +  +dvd  +d k
  MMETSP1061-20121228|26541_1  33 QYDLVVIGGGPGGYVAAIKAAQLGMKTACVEmRGRLGGT---CLNVGCIPSKALLTSTHHYHDAKHHFADHGVVINGDISMDVDKMQDTK 119
                  5**************************999957889995...467888888888888888888888888888888888888888777766 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 0.00019
    TIGR03143 146 vlviGgGfaaaeeavfltkyakkvtvivrepdf..tcakaiaekvkanPk.ievkfnvelkevtGddvlreakfvnnatGeeteykakkdegtfGvfvfvGyvPsself...kgkvelderGyvvtnedletnveGvyaaGdl 282
                  + v+GgG    e +   ++ + +vtvi   +    + ++ i++k ++  k    kfn+  k v+   v+++   v + t   +  ++k+++    v+v  G  P +e +      ++ d+ G +  + +++t+v+ vya+Gd 
  MMETSP1061-20121228|26541_1 210 MAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRIlpSNDNEIGKKFQTTLKkQGFKFNLKTKVVKS--VVEDDG-VVLSTEPAKGGDVKEEK-YDVVLVSTGRRPYTEGLgleDMGIQTDQLGRIEVDSHFKTAVPSVYAIGDC 348
                  56999999999999999999999999987776534678889999887765145777777666553..333332.22344444445555555.4468999*******9642214569*************************95 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.1   8.4e-06   0.00088     372     459 ..      33     122 ..      18     130 .. 0.85
   2 !   13.8   0.3   3.1e-05    0.0033     447     576 ..     156     284 ..     146     309 .. 0.78
   3 !   12.2   0.1   9.4e-05    0.0099     362     516 ..     196     358 ..     189     371 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 8.4e-06
    TIGR03996 372 pgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargdGlsrlaaladwledecr..rlGvelrlgaavdaeeldaaraaG 459
                    d +v+GGGp G  aa   a  G +   +e   rlGG+   +   + +  l+   ++ +++ +    Gv ++ + ++d++++++++++ 
  MMETSP1061-20121228|26541_1  33 QYDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLGGTCLNVGCIPSKALLTSTHHYHDAKHHfaDHGVVINGDISMDVDKMQDTKSKS 122
                  567899***********99********************999998888888888888887766533689***********9999998875 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 3.1e-05
    TIGR03996 447 vdaeeldaaraaGevvvlatGsvarp.lpapvda.tvrvldaaevleaddalaeGpvvvidplGGpvgvavaealaarGrdvsivt.pdsvvGsrlgasGdladantrlqragvtrqlasrvve..iardglvle 576
                  v  +e +++  + + +++atGs   p +p+pvd+   +++d + +le  + ++e   vv    GG +g+ +  + a +G +v+++   d +  s     G     +t l++ g + +l+++vv+  ++ dg+vl 
  MMETSP1061-20121228|26541_1 156 VALNEGGSESLDTKNILIATGSEVTPlPPVPVDNeGGKIVDSTGALEIRK-IPEKMAVV---GGGVIGLEMGSVWARLGAEVTVIEfLDRILPSNDNEIGKK--FQTTLKKQGFKFNLKTKVVKsvVEDDGVVLS 284
                  5555666677788899**********557999862568899999988877.66655555...5999*****************9863699999999888864..5678999999999999987544788888875 PP

  == domain 3    score: 12.2 bits;  conditional E-value: 9.4e-05
    TIGR03996 362 dpdea.eraatpgdvlvvGGGpaGleaarvlavrGhrvtlae........asarlGGmvriaargdGlsrlaaladwledecrrlGvelrlgaavdaeeldaaraaGevvvlatGsvarplpapvda...tvrvldaaevleaddalaeGpvvvidplGGpvgvava 516
                  d   a e   +p ++ vvGGG  Gle   v a  G +vt++e        +  ++G   +++ + +G  ++++ ++ +++  +  Gv l ++ a   ++ d ++++ +vv+++tG  +       ++    ++ l+  ev  + ++  +  +++ d + Gp+    a
  MMETSP1061-20121228|26541_1 196 DSTGAlEIRKIPEKMAVVGGGVIGLEMGSVWARLGAEVTVIEfldrilpsNDNEIGKKFQTTLKKQGF-KFNLKTKVVKSVVEDDGVVLSTEPA---KGGDVKEEKYDVVLVSTGRRPYTEGLGLEDmgiQTDQLGRIEVDSHFKTAVPSVYAIGDCISGPMLAHKA 358
                  5544435567899999***********************99844443333356789999999988886.799999999999999***9999976...55677888899*******9998877776652225677888888888888888889999999999865554 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.7e-05    0.0028      21      65 ..      33      77 ..      13      95 .. 0.82
   2 ?    3.4   0.0     0.075       7.9      24      51 ..     210     237 ..     197     253 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.7e-05
    TIGR00292 21 esDviivGaGpsGLtaayylakeglkvvvlerklaiGGGswgGGm 65
                 + D +++G+Gp G  aa   a+ g+k++ +e +  +GG     G 
  MMETSP1061-20121228|26541_1 33 QYDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLGGTCLNVGC 77
                 469*******************************99998776665 PP

  == domain 2    score: 3.4 bits;  conditional E-value: 0.075
    TIGR00292  24 viivGaGpsGLtaayylakeglkvvvle 51 
                  +++vG+G  GL  + + a+ g  v v+e
  MMETSP1061-20121228|26541_1 210 MAVVGGGVIGLEMGSVWARLGAEVTVIE 237
                  689***********************98 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.2   1.1e-05    0.0011       1      45 [.      33      77 ..      33     105 .. 0.80
   2 ?    2.7   0.0     0.099        10       4      36 ..     210     242 ..     208     265 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.1e-05
    TIGR00031  1 kfdyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevd 45
                 ++d++++G G  G v a  +a+l+ +   ve r ++GG c +  +
  MMETSP1061-20121228|26541_1 33 QYDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLGGTCLNVGC 77
                 59**************************************88655 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.099
    TIGR00031   4 yiivGaGlsGivlaeilaklnkrvlvvekrnhi 36 
                  + +vG G+ G  +  + a+l+ +v v+e  ++i
  MMETSP1061-20121228|26541_1 210 MAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRI 242
                  679************************977665 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.2   1.9e-06    0.0002       1      32 [.      34      65 ..      34     107 .. 0.91
   2 ?   -2.4   0.0       6.2   6.5e+02     121     148 ..     150     178 ..     129     180 .. 0.74
   3 ?   -0.5   1.2       1.7   1.8e+02       5      30 ..     212     237 ..     210     306 .. 0.57

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.9e-06
    TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrVlllekk 32
                 yD+vv+G+Gp G  aA ++a+ G++++ +e +
  MMETSP1061-20121228|26541_1 34 YDLVVIGGGPGGYVAAIKAAQLGMKTACVEMR 65
                 9**************************99965 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 6.2
    TIGR02032 121 d.ekvkvevredekkevtakivigAdGak 148
                  + + v+v+++e+ +++++ k + +A+G++
  MMETSP1061-20121228|26541_1 150 GpNGVEVALNEGGSESLDTKNILIATGSE 178
                  15789999999989999********9985 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 1.7
    TIGR02032   5 vvGaGpaGssaAlrlakkGlrVllle 30 
                  vvG+G  G  ++   a+ G++V ++e
  MMETSP1061-20121228|26541_1 212 VVGGGVIGLEMGSVWARLGAEVTVIE 237
                  66777777777777777777776666 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   1.8   9.1e-05    0.0096       2      35 ..      37      70 ..      36      75 .. 0.95
   2 ?    5.3   0.0     0.013       1.4       2      32 ..     211     241 ..     210     267 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 9.1e-05
    TIGR02734  2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGG 35
                 vViG+G gG  +Ai+ a+ G+++  +e r ++GG
  MMETSP1061-20121228|26541_1 37 VVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLGG 70
                 8********************************9 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.013
    TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdk 32 
                   V+G+G+ GL +    a+ G evtv+e  d+
  MMETSP1061-20121228|26541_1 211 AVVGGGVIGLEMGSVWARLGAEVTVIEFLDR 241
                  69************************97664 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   1.2   6.3e-06   0.00066       2      38 ..      37      73 ..      36      89 .. 0.92
   2 ?    5.1   0.7     0.025       2.6       1      28 [.     210     237 ..     210     242 .. 0.94

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 6.3e-06
    TIGR03467  2 vvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRar 38
                 vv+GgG  G  AA++ a+ G+++  +E r +lGG + 
  MMETSP1061-20121228|26541_1 37 VVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLGGTCL 73
                 8*********************************986 PP

  == domain 2    score: 5.1 bits;  conditional E-value: 0.025
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllE 28 
                  ++vvGgG+ GL  +   ar G++vt++E
  MMETSP1061-20121228|26541_1 210 MAVVGGGVIGLEMGSVWARLGAEVTVIE 237
                  68************************99 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.4   0.00045     0.047       1      67 [.      35      98 ..      35     131 .. 0.73
   2 ?   -2.2   0.0       2.6   2.8e+02     145     189 ..     130     176 ..     111     177 .. 0.72
   3 !    7.4   0.1    0.0033      0.34     131     189 ..     249     306 ..     241     308 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00045
    TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNsaiaaggmnaaktkiQkkkgieDskelfi 67
                 d+vv+G G  G+ aa++a + g ++   +e    +GG  +  +  +  +k  +   ++++D k  f 
  MMETSP1061-20121228|26541_1 35 DLVVIGGGPGGYVAAIKAAQLG-MKTACVEMRGRLGGTCLNVGC-I-PSKALLTSTHHYHDAKHHFA 98
                 78********************.888889999999997655443.3.23344555666666666665 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.6
    TIGR01813 145 velrlnskvedlikddqgqv...tGvkvkekgkkikikaakaVvlatG 189
                  +e+  +++ +d  k  +g++    Gv+v+ +++  +    k++++atG
  MMETSP1061-20121228|26541_1 130 IEYLFKKYGVDYHK-GKGKIsgpNGVEVALNEGGSESLDTKNILIATG 176
                  55555555555554.556662224799999999999999999999999 PP

  == domain 3    score: 7.4 bits;  conditional E-value: 0.0033
    TIGR01813 131 eivqklskkakkegvelrlnskvedlikddqgqvtGvkvkekgkkikikaakaVvlatG 189
                  ei +k+++++kk+g +++l++kv++ + +d+g v   + + kg+ +k  + + V+++tG
  MMETSP1061-20121228|26541_1 249 EIGKKFQTTLKKQGFKFNLKTKVVKSVVEDDGVVLSTEPA-KGGDVKEEKYDVVLVSTG 306
                  6778999************************777655543.556666666666766666 PP

>> TIGR01816  sdhA_forward: succinate dehydrogenase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.3   1.6e-05    0.0016       2      31 ..      33      62 ..      32      66 .. 0.95
   2 ?   -0.1   0.0      0.41        43     152     198 ..     129     177 ..     122     179 .. 0.83
   3 ?   -0.8   0.0      0.64        68     352     383 ..     320     350 ..     298     400 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.6e-05
    TIGR01816  2 kfdvvvvGaGGaGlraalelakeglktavv 31
                 ++d vv+G+G  G  aa+++a+ g+kta+v
  MMETSP1061-20121228|26541_1 33 QYDLVVIGGGPGGYVAAIKAAQLGMKTACV 62
                 7****************************9 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.41
    TIGR01816 152 dtsffveyfaldliledgevrGv..ialeletGeihvfrakavvlatGG 198
                  +++++   + +d  + +g++ G   + + l++G    + +k++++atG 
  MMETSP1061-20121228|26541_1 129 GIEYLFKKYGVDYHKGKGKISGPngVEVALNEGGSESLDTKNILIATGS 177
                  6788888899999999999988523667899****************96 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.64
    TIGR01816 352 GiptnlkGqvlrdadgndsiveGlyavGeaac 383
                  Gi t+  G++ +d++  ++ v+ +ya+G++  
  MMETSP1061-20121228|26541_1 320 GIQTDQLGRIEVDSH-FKTAVPSVYAIGDCIS 350
                  899999999888665.78899999**999864 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.2      0.19        20     168     196 ..      34      62 ..      29      67 .. 0.85
   2 !   13.7   0.1   4.4e-05    0.0046     167     217 ..     207     257 ..     187     276 .. 0.77
   3 ?   -0.8   0.0       1.1   1.2e+02     266     289 ..     461     484 ..     450     488 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.19
    TIGR00518 168 gkvtiiGgGvvGtnaaklavGlGatvtil 196
                   ++++iGgG  G+ aa  a  lG + + +
  MMETSP1061-20121228|26541_1  34 YDLVVIGGGPGGYVAAIKAAQLGMKTACV 62 
                  5789************9999999887666 PP

  == domain 2    score: 13.7 bits;  conditional E-value: 4.4e-05
    TIGR00518 167 agkvtiiGgGvvGtnaaklavGlGatvtildinvdrlrqldelfgsriktr 217
                  + k++++GgGv+G +   +   lGa+vt+++     l   d++ g++ +t 
  MMETSP1061-20121228|26541_1 207 PEKMAVVGGGVIGLEMGSVWARLGAEVTVIEFLDRILPSNDNEIGKKFQTT 257
                  46899*************************985555677788888887775 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 1.1
    TIGR00518 266 vaidqGGivetvrvttydqptyak 289
                  +ai+ G   e +  t++ +pt  +
  MMETSP1061-20121228|26541_1 461 IAIEYGASSEDMARTCHAHPTLSE 484
                  79******************9876 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.8    0.0082      0.86       3      39 ..      35      71 ..      33      75 .. 0.91
   2 !    9.3   0.0    0.0008     0.084       3      32 ..     209     238 ..     207     282 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0082
    TIGR02733  3 svvviGaGiaGltaaallakrGlevtlleaaaqvGGC 39
                 ++vviG+G +G  aa   a+ G++   +e    +GG 
  MMETSP1061-20121228|26541_1 35 DLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLGGT 71
                 68****************************9999984 PP

  == domain 2    score: 9.3 bits;  conditional E-value: 0.0008
    TIGR02733   3 svvviGaGiaGltaaallakrGlevtllea 32 
                  ++ v+G+G+ Gl  +++ a+ G evt++e 
  MMETSP1061-20121228|26541_1 209 KMAVVGGGVIGLEMGSVWARLGAEVTVIEF 238
                  789************************994 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.3   1.3e-05    0.0013       1      30 [.      34      63 ..      34      68 .. 0.94
   2 ?   -1.5   0.3       1.9     2e+02       3      29 ..     210     236 ..     209     238 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.3e-05
    TIGR03378  1 fDviiiGgGlaGlscalrlaeaGkktaiia 30
                 +D ++iGgG  G+ +a+++a+ G+kta + 
  MMETSP1061-20121228|26541_1 34 YDLVVIGGGPGGYVAAIKAAQLGMKTACVE 63
                 9*************************9885 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.9
    TIGR03378   3 viiiGgGlaGlscalrlaeaGkktaii 29 
                  ++++GgG+ Gl  +   a+ G  + +i
  MMETSP1061-20121228|26541_1 210 MAVVGGGVIGLEMGSVWARLGAEVTVI 236
                  579*********999999999888887 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   1.7   5.9e-05    0.0062       2      34 ..      37      69 ..      36      77 .. 0.91
   2 ?    1.9   0.0      0.16        17     136     163 ..     153     181 ..      82     203 .. 0.71
   3 ?    2.9   0.3     0.082       8.6       2      33 ..     211     242 ..     210     244 .. 0.86
   4 ?    2.1   0.0      0.14        15     107     162 ..     249     310 ..     243     328 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 5.9e-05
    TIGR00275  2 iiiGgGaaGlmaAitaaeegakVlllEknkkig 34
                 ++iGgG+ G +aAi+aa+ g k + +E + ++g
  MMETSP1061-20121228|26541_1 37 VVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLG 69
                 8*********************99999988877 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.16
    TIGR00275 136 eekfevet.ekkeleakkvilatGgksyp 163
                    ++ ++  ++++l +k++++atG++  p
  MMETSP1061-20121228|26541_1 153 GVEVALNEgGSESLDTKNILIATGSEVTP 181
                  33344444678999**********98765 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.082
    TIGR00275   2 iiiGgGaaGlmaAitaaeegakVlllEknkki 33 
                  +++GgG  Gl      a+ ga+V+++E  ++i
  MMETSP1061-20121228|26541_1 211 AVVGGGVIGLEMGSVWARLGAEVTVIEFLDRI 242
                  8*********888888889*******977665 PP

  == domain 4    score: 2.1 bits;  conditional E-value: 0.14
    TIGR00275 107 svldaLlkelkelgvevlteskvksikkeeekfevet......ekkeleakkvilatGgksy 162
                  ++ + ++++lk++g ++++++kv +   e++++ ++t      + ke +++ v+++tG   y
  MMETSP1061-20121228|26541_1 249 EIGKKFQTTLKKQGFKFNLKTKVVKSVVEDDGVVLSTepakggDVKEEKYDVVLVSTGRRPY 310
                  567788999*************9888777777777775664333456678889999997665 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.6   2.2e-05    0.0023     169     208 ..      34      73 ..      24      78 .. 0.90
   2 ?   -2.3   0.2       1.4   1.5e+02     173     198 ..     212     237 ..     209     242 .. 0.91
   3 ?   -2.4   0.0       1.5   1.5e+02     749     779 ..     432     462 ..     430     471 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.2e-05
    TIGR01372 169 cDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsll 208
                   D++v+G+Gp G  aA +Aa+ G++   v+ + + GG+ l
  MMETSP1061-20121228|26541_1  34 YDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRLGGTCL 73 
                  69***********************************865 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.4
    TIGR01372 173 vvGaGpaGLaaAraAaraGarvilvd 198
                  vvG+G  GL      ar Ga v++++
  MMETSP1061-20121228|26541_1 212 VVGGGVIGLEMGSVWARLGAEVTVIE 237
                  9*********************9986 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 1.5
    TIGR01372 749 kvtltsvtdqwatlavaGPkarkllaevveg 779
                  kv     td++  + + GP+a +++ae v +
  MMETSP1061-20121228|26541_1 432 KVLADKETDKILGVHIIGPNAGEMIAEAVIA 462
                  56667789999999**********9998765 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.1   1.2      0.01       1.1       1      45 [.      34      77 ..      34     100 .. 0.83
   2 ?   -1.3   0.0       1.8   1.9e+02     151     205 ..     129     187 ..     111     195 .. 0.71
   3 !    9.8   0.5   0.00076      0.08       3      30 ..     210     237 ..     208     243 .. 0.93

  Alignments for each domain:
  == domain 1    score: 6.1 bits;  conditional E-value: 0.01
    TIGR03364  1 tdvvvvGaGivGlahAlaaarrGlkVtvierssraaGAsvrNFGq 45
                 +d+vv+G+G  G   A++aa+ G+k + +e   r  G +  N G 
  MMETSP1061-20121228|26541_1 34 YDLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRL-GGTCLNVGC 77
                 79***************************987764.555566665 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 1.8
    TIGR03364 151 laeyLaeekgveflwntavtev.etstvrtsrG..evh.aeqvlVcsgadfetLfpelf 205
                    eyL +++gv+++ ++   +  +  +v  ++G  e    +++l+ +g++++ L p  +
  MMETSP1061-20121228|26541_1 129 GIEYLFKKYGVDYHKGKGKISGpNGVEVALNEGgsESLdTKNILIATGSEVTPLPPVPV 187
                  568999999999999875555415557777766224447999******99999987665 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 0.00076
    TIGR03364   3 vvvvGaGivGlahAlaaarrGlkVtvie 30 
                  ++vvG+G++Gl +    ar G +Vtvie
  MMETSP1061-20121228|26541_1 210 MAVVGGGVIGLEMGSVWARLGAEVTVIE 237
                  78*************************9 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.2   0.00013     0.014       1      32 [.      34      65 ..      34      83 .. 0.88
   2 ?   -0.2   0.0      0.77        81       3      37 ..     210     243 ..     208     247 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 0.00013
    TIGR02023  1 ydvlviGggpsGaaaaetLakagievillere 32
                 yd +viGggp+G  aa++ a+ g++++ +e +
  MMETSP1061-20121228|26541_1 34 YDLVVIGGGPGGYVAAIKAAQLGMKTACVEMR 65
                 799***********************999865 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.77
    TIGR02023   3 vlviGggpsGaaaaetLakagievillerelarik 37 
                  ++v+Ggg+ G       a+ g ev ++e   +ri 
  MMETSP1061-20121228|26541_1 210 MAVVGGGVIGLEMGSVWARLGAEVTVIEFL-DRIL 243
                  78**********************999853.6665 PP

>> TIGR00136  gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.5   0.1    0.0011      0.12       1      30 [.      34      63 ..      34      81 .. 0.87
   2 ?    3.3   0.0     0.041       4.4       3      30 ..     210     237 ..     208     251 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.0011
    TIGR00136  1 fdviviGaGhaGieaalaaarlgaktlllt 30
                 +d++viG+G  G  aa+ aa+lg+kt  + 
  MMETSP1061-20121228|26541_1 34 YDLVVIGGGPGGYVAAIKAAQLGMKTACVE 63
                 689***********************8765 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.041
    TIGR00136   3 viviGaGhaGieaalaaarlgaktlllt 30 
                  + v+G+G  G+e   + arlga+++++ 
  MMETSP1061-20121228|26541_1 210 MAVVGGGVIGLEMGSVWARLGAEVTVIE 237
                  679*********************9985 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.4   0.00021     0.022       1      34 [.      35      68 ..      35      72 .. 0.88
   2 ?    0.4   0.0      0.57        60       2      32 ..     210     240 ..     209     264 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00021
    TIGR01790  1 DliviGgGlAglaiAlelakpglrvqlieaapkl 34
                 Dl+viGgG+ g + A + a+ g++   +e   +l
  MMETSP1061-20121228|26541_1 35 DLVVIGGGPGGYVAAIKAAQLGMKTACVEMRGRL 68
                 9***********************9999866555 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.57
    TIGR01790   2 liviGgGlAglaiAlelakpglrvqlieaap 32 
                  ++v+GgG  gl +    a+ g +v +ie  +
  MMETSP1061-20121228|26541_1 210 MAVVGGGVIGLEMGSVWARLGAEVTVIEFLD 240
                  58************************99655 PP

>> TIGR03026  NDP-sugDHase: nucleotide sugar dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.3      0.46        49       3      32 ..      36      65 ..      34      68 .. 0.92
   2 ?   10.8   0.0   0.00032     0.033       2      33 ..     209     240 ..     208     288 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.46
    TIGR03026  3 iavvGlGYvGlplaallaekgheVvgvDid 32
                 ++v+G G  G + a+  a+ g++  +v+++
  MMETSP1061-20121228|26541_1 36 LVVIGGGPGGYVAAIKAAQLGMKTACVEMR 65
                 78*************************986 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00032
    TIGR03026   2 kiavvGlGYvGlplaallaekgheVvgvDidk 33 
                  k+avvG G +Gl ++ + a+ g+eV++++  +
  MMETSP1061-20121228|26541_1 209 KMAVVGGGVIGLEMGSVWARLGAEVTVIEFLD 240
                  789************************99755 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.7       0.4        42       2      30 ..      37      65 ..      36      75 .. 0.88
   2 ?    0.3   0.0      0.62        65     162     223 ..     135     195 ..     125     203 .. 0.82
   3 ?    9.3   1.0    0.0011      0.12       1      28 [.     210     237 ..     210     240 .. 0.94

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.4
    TIGR02352  2 lviGgGviGlsvAveLakrghkvtllekd 30
                 +viGgG  G + A+++a+ g+k++ +e +
  MMETSP1061-20121228|26541_1 37 VVIGGGPGGYVAAIKAAQLGMKTACVEMR 65
                 8**********************999876 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.62
    TIGR02352 162 eklGveiieevevqeieargekvtavktssekvqadqvvlaaGawakellplalrpvkgeil 223
                  +k Gv+ ++   +++  + +e v   ++ se+++  ++ +a+G+  + l p ++ +  g+i+
  MMETSP1061-20121228|26541_1 135 KKYGVDYHKGKGKISGPNGVE-VALNEGGSESLDTKNILIATGSEVTPLPPVPVDNEGGKIV 195
                  677888888777777777777.7777888889*************99999998888888776 PP

  == domain 3    score: 9.3 bits;  conditional E-value: 0.0011
    TIGR02352   1 vlviGgGviGlsvAveLakrghkvtlle 28 
                  ++v+GgGviGl ++   a+ g++vt++e
  MMETSP1061-20121228|26541_1 210 MAVVGGGVIGLEMGSVWARLGAEVTVIE 237
                  68***********************986 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00056     0.059       1      29 [.      35      63 ..      35     116 .. 0.92
   2 ?   -2.6   0.0       2.8     3e+02     166     188 ..     154     176 ..     123     178 .. 0.72
   3 ?   -4.4   0.5       9.8     1e+03       3      28 ..     211     236 ..     210     238 .. 0.84
   4 ?   -0.2   0.0      0.55        58     344     372 ..     320     350 ..     317     374 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00056
    TIGR01812  1 DvvivGaGlAGlraAveaakkglkvavis 29
                 D+v++G+G  G  aA++aa+ g+k+a++ 
  MMETSP1061-20121228|26541_1 35 DLVVIGGGPGGYVAAIKAAQLGMKTACVE 63
                 89************************985 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.8
    TIGR01812 166 vaidlktgevvvlrakavvlatG 188
                  v + l++g  + l +k++++atG
  MMETSP1061-20121228|26541_1 154 VEVALNEGGSESLDTKNILIATG 176
                  5678999999************9 PP

  == domain 3    score: -4.4 bits;  conditional E-value: 9.8
    TIGR01812   3 vivGaGlAGlraAveaakkglkvavi 28 
                   +vG+G+ Gl      a+ g++v vi
  MMETSP1061-20121228|26541_1 211 AVVGGGVIGLEMGSVWARLGAEVTVI 236
                  69********9988888888888877 PP

  == domain 4    score: -0.2 bits;  conditional E-value: 0.55
    TIGR01812 344 GietdkkGevile..nesivkGlfaaGEaac 372
                  Gi+td+ G++ ++   ++ v  ++a+G++ +
  MMETSP1061-20121228|26541_1 320 GIQTDQLGRIEVDshFKTAVPSVYAIGDCIS 350
                  8*******98877445789*********965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (502 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        59  (0.0143832); expected 4.1 (0.001)
Passed Fwd filter:                        39  (0.00950756); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 0.76u 0.14s 00:00:00.90 Elapsed: 00:00:00.74
# Mc/sec: 895.39
//
Query:       MMETSP1061-20121228|26548_1  [L=603]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.42    7.3  17.7       0.23    8.2   5.6    3.0  3  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   5.6   5.7e-05      0.23     135     260 ..     155     282 ..     149     289 .. 0.85
   2 ?    3.8   0.5    0.0012       5.1     131     211 ..     364     443 ..     349     462 .. 0.65
   3 ?   -0.3   0.0     0.022        89     386     402 ..     521     537 ..     513     538 .. 0.86

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 5.7e-05
    TIGR01843 135 esrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelae.leaeleklkaeldeleeklqeleqk.freevseelreaqarlaeleee 260
                  e+r+++lr+++++ eaq++ +e +  +l+a   al++ l+   + ++++ +  ++ + +r +lL+l+r r ++ +e  e l+ ++++  a+++++++k ++++ + +   + ++ +ea+++++++e+ 
  MMETSP1061-20121228|26548_1 155 EKRLQNLRQKIQQCEAQREIYEGQYLSLRAHYIALSKHLKTKRSDVDSRVSFLQELIRKRGRLLALQRVRIQMVRETLEcLRYRMANPSAQAASAKAKEDQADLHaLWTSLDQQWKEAEESISKIEAS 282
                  6899******************************************************************999998554266667777777777777666666441456789999*******999875 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0012
    TIGR01843 131 eslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgel 211
                  +s+ +s +  lr+ +++l+++i++++a  ++ q ++ ++r++ + + + ++ lr+ + + +v+r+++L   +e + +++ l
  MMETSP1061-20121228|26548_1 364 RSDRSSILPGLRDDVARLKREIAKEQALNREFQTNAIKMRKENDELVSMMTLLRSET-EAVVARHNVLLESEEAKRASKVL 443
                  555555566677888888888888888888888887777777777777777777744.44555555555444444444444 PP

  == domain 3    score: -0.3 bits;  conditional E-value: 0.022
    TIGR01843 386 lsPGMpveadiktgeRt 402
                    PG++++a++  g+R 
  MMETSP1061-20121228|26548_1 521 TEPGVSATAAVSAGKRA 537
                  57*************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (603 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 2340.87
//
Query:       MMETSP1061-20121228|26553_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 1426.74
//
Query:       MMETSP1061-20121228|26572_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|26583_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.35
# Mc/sec: 354.49
//
Query:       MMETSP1061-20121228|26589_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 777.27
//
Query:       MMETSP1061-20121228|26593_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1337.11
//
Query:       MMETSP1061-20121228|26601_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.40
# Mc/sec: 973.42
//
Query:       MMETSP1061-20121228|26609_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.37
# Mc/sec: 356.73
//
Query:       MMETSP1061-20121228|26615_1  [L=285]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (285 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1393.22
//
Query:       MMETSP1061-20121228|26616_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1991.48
//
Query:       MMETSP1061-20121228|26626_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.36
# Mc/sec: 2335.47
//
Query:       MMETSP1061-20121228|26645_1  [L=780]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (780 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.48
# Mc/sec: 2144.82
//
Query:       MMETSP1061-20121228|26660_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-06   25.4   0.0    5.6e-06   24.3   0.0    1.5  1  TIGR00229 sensory_box: PAS domain S-box protein


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   1.4e-09   5.6e-06       4      71 ..     458     525 ..     456     540 .. 0.90

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 1.4e-09
    TIGR00229   4 eeryrailesspdaiivvdeeGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrle 71 
                  e  yr +++s   +++++   G +++ N+ f++i  Y+++e++ ++v++l++  d +    +i+++l+
  MMETSP1061-20121228|26660_1 458 ESDYRHVFNSCTIGMAIASMGGAFIDCNKVFCQIANYTKQEICSMTVFNLTARSDLQPAFDLISQMLS 525
                  788**********************************************9999999887777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.39
# Mc/sec: 2084.75
//
Query:       MMETSP1061-20121228|26675_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 854.79
//
Query:       MMETSP1061-20121228|26686_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1061-20121228|26697_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0031   15.0   0.1     0.0054   14.3   0.0    1.3  1  TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase


Domain annotation for each model (and alignments):
>> TIGR00213  GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   1.3e-06    0.0054      35      83 ..     119     166 ..     111     174 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.3e-06
    TIGR00213  35 lrelkklGyklvlvtnqsGiarGyftekqfeqlteyldeslaerdvdld 83 
                  +  +  +G  lv++  qsGi+ G   e++     +y++e l ++++d +
  MMETSP1061-20121228|26697_1 119 MSAVAGMGLYLVVILIQSGISTGALVEQNIY-WVNYMQEYLDKENFDGN 166
                  556778*******************998875.679******98888755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1430.76
//
Query:       MMETSP1061-20121228|26718_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 648.95
//
Query:       MMETSP1061-20121228|26721_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1061-20121228|26744_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.40
# Mc/sec: 188.08
//
Query:       MMETSP1061-20121228|26743_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.7    5.3  15.2        4.9    4.9  10.5    1.1  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  10.5    0.0012       4.9      57     184 ..     141     263 ..     104     266 .. 0.54

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0012
    TIGR03499  57 asaaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae.........eelrkelkalkellekqlselaleeedperakllkklleagvseelarelleklkekedaeeareklreaLekk 184
                  +++ ++++++k+a+++a +k+l+++++++e+ek +++++ e            +          + r+e + +ke+le+  +el  e++  e + + + ++e+ ++ee +  l e+++ ++++++  e+l+e+ e++
  MMETSP1061-20121228|26743_1 141 KKNFHNRANEKAAMDKALAKSLEETRKRNEEEK-HANEQLE------------RalsvsrldeLKEREEEARMKEALENSKRELI-EQSIDEEELIRRAMEESMLEEERMMILRESISSHSHNSQEDEELLEVFERS 263
                  222222222222222222222222222222222.1112222............0234445555778899999**********994.444444555555555555555666656666666777788888888877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       551  (0.134325); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1258.61
//
Query:       MMETSP1061-20121228|26753_1  [L=784]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (784 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.52
# Mc/sec: 1989.99
//
Query:       MMETSP1061-20121228|26767_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|26779_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.1   0.0     0.0014   15.7   0.0    1.2  1  TIGR01200 TIGR01200: Porphyromonas gingivalis paralogous family TIGR01200


Domain annotation for each model (and alignments):
>> TIGR01200  TIGR01200: Porphyromonas gingivalis paralogous family TIGR01200
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.3e-07    0.0014       6     121 ..      19     130 ..      15     181 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.3e-07
    TIGR01200   6 llvllicfllslsviqaqvarivdleglkvdtvdkkvkdkakrrvfykvei.vkdtskrekktraqcvleiGrkgskfkdlyqyaadslndavarkkgsamevfskayslvkkikfr 121
                  ll +l  +l++l+  q +  +  dle++     + +++d +++r f  v+   ++ +k++  + aq  l i +++  +   y   ad l++++ r   + +e  ++  +l +ki + 
  MMETSP1061-20121228|26779_1  19 LLHILLILLITLVSGQGEYNQ-ADLEAMT----EAELEDICIKRGFQLVNEeSEELTKQDYIEAAQRCLAIEQEMNELLTQYPELADELEEEIKRMEKENAEKQAQVEELENKISHD 130
                  666666688888888877765.6899996....56889******9988865167789999999*********************************999999999999999999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       390  (0.0950756); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1385.89
//
Query:       MMETSP1061-20121228|26813_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         8  (0.00195027); expected 82.0 (0.02)
Passed bias filter:                        7  (0.00170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 234.65
//
Query:       MMETSP1061-20121228|26812_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1878.31
//
Query:       MMETSP1061-20121228|26818_1  [L=996]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (996 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.12s 00:00:00.57 Elapsed: 00:00:00.28
# Mc/sec: 4695.04
//
Query:       MMETSP1061-20121228|26832_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.26
# Mc/sec: 370.58
//
Query:       MMETSP1061-20121228|26845_1  [L=726]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (726 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 2457.03
//
Query:       MMETSP1061-20121228|26848_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1765.92
//
Query:       MMETSP1061-20121228|26853_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 2034.56
//
Query:       MMETSP1061-20121228|26881_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 409.86
//
Query:       MMETSP1061-20121228|26914_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      211  (0.0514383); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.36
# Mc/sec: 186.98
//
Query:       MMETSP1061-20121228|26915_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 620.35
//
Query:       MMETSP1061-20121228|26909_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.42
# Mc/sec: 1442.45
//
Query:       MMETSP1061-20121228|26929_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-05   22.0   0.0    7.3e-05   21.1   0.0    1.5  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   1.8e-08   7.3e-05       3     126 ..      83     207 ..      81     221 .. 0.65

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.8e-08
    TIGR01444   3 iDiGAniGdv..slvfaravaegrviafEPlpdllekleenvklnnlknvkllnaAvgdregeleftvsddatgnsslaads.....elaeeseieVevvtlddlveeag.lekvdllKiDvEGaEleVLrg 126
                  +D  An  ++    ++++++ ++r  ++EP+p+   +l++      +kn +l+ a vg +    e  +++ ++ +++    +     ++ ++s+++  +v l ++ +++  ++ +d+l +DvEGaE  ++++
  MMETSP1061-20121228|26929_1  83 VDLAANDATTlsNSYALERFFGWRGLCIEPNPEYWYSLTHA-----RKNCQLVGAVVGRKRL--EQVNFKFDGLDHGGIVGNgfdngSHLKRSSTKEYTVPLLEIFKKFDvPKVIDYLSLDVEGAEEFIMNE 207
                  56666666542245777788889**************9998.....3335789999997764..333333333333333333133343333334445677788888888867789***********988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1920.44
//
Query:       MMETSP1061-20121228|26935_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 2608.10
//
Query:       MMETSP1061-20121228|26965_1  [L=617]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (617 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.20s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 2395.21
//
Query:       MMETSP1061-20121228|26976_1  [L=829]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (829 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.33
# Mc/sec: 3315.73
//
Query:       MMETSP1061-20121228|26988_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 367.27
//
Query:       MMETSP1061-20121228|27005_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-22   78.1   0.0    1.8e-22   77.9   0.0    1.0  1  TIGR00543 isochor_syn: isochorismate synthase
    2.5e-07   28.2   0.0    2.6e-07   28.1   0.0    1.0  1  TIGR01820 TrpE-arch: anthranilate synthase component I
    3.9e-06   23.9   0.0    4.1e-06   23.9   0.0    1.0  1  TIGR00564 trpE_most: anthranilate synthase component I
    7.3e-06   23.2   0.0    8.1e-06   23.0   0.0    1.0  1  TIGR00553 pabB: aminodeoxychorismate synthase, component I
    1.2e-05   22.6   0.0    1.3e-05   22.5   0.0    1.0  1  TIGR01824 PabB-clade2: aminodeoxychorismate synthase, component I


Domain annotation for each model (and alignments):
>> TIGR00543  isochor_syn: isochorismate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.9   0.0   2.2e-25   1.8e-22     250     316 ..      12      79 ..       2      83 .. 0.88

  Alignments for each domain:
  == domain 1    score: 77.9 bits;  conditional E-value: 2.2e-25
    TIGR00543 250 ksllkllkqLhPTPAvgGlPreeAlelireiEt..fdRglYaapiGwldkegngefiVaiRSalvedeq 316
                  + +  ll++LhPTPAvgG+P+  Al+++re+E+  fdRg+Ya+p G++++ + +e++VaiRS+l+++++
  MMETSP1061-20121228|27005_1  12 DVVEYLLNALHPTPAVGGYPKGPALRFVREYEScgFDRGFYAGPFGFVGSGE-AEIVVAIRSGLISRSK 79 
                  4566799*************************6559*************999.************9865 PP

>> TIGR01820  TrpE-arch: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.2e-10   2.6e-07     355     415 ..      18      79 ..       3     100 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.2e-10
    TIGR01820 355 lkAvfPAGtlsGaPKirAmeiieelEk..epRgvYgGgvGyfslngdadlAiviRtaliekkk 415
                  l+A +P   + G PK  A+  + e E+    Rg Y+G  G+ +  g+a++ ++iR+ li+++k
  MMETSP1061-20121228|27005_1  18 LNALHPTPAVGGYPKGPALRFVREYEScgFDRGFYAGPFGFVGS-GEAEIVVAIRSGLISRSK 79 
                  78************************73368**********986.6************99744 PP

>> TIGR00564  trpE_most: anthranilate synthase component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   4.9e-09   4.1e-06     361     417 ..      18      75 ..       4      97 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 4.9e-09
    TIGR00564 361 lraalPaGTlsGAPKvrAmelidelEke..kRgiYgGavgylsfdgdvdtaiaiRtmvl 417
                  l a  P   + G PK  A++ + e+E+    Rg+Y+G +g+++  g+ ++ +aiR+ ++
  MMETSP1061-20121228|27005_1  18 LNALHPTPAVGGYPKGPALRFVREYESCgfDRGFYAGPFGFVG-SGEAEIVVAIRSGLI 75 
                  77889*********************85338**********98.699********9876 PP

>> TIGR00553  pabB: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   9.9e-09   8.1e-06     235     293 ..      13      72 ..       3      89 .. 0.85

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 9.9e-09
    TIGR00553 235 tlsdllralFPggSiTGaPKlrameiikelEk..qrRgvYcGaiGllspegeldlnvaIRT 293
                   ++ ll+al P+  + G PK  a + ++e E     Rg Y+G  G++   ge ++ vaIR 
  MMETSP1061-20121228|27005_1  13 VVEYLLNALHPTPAVGGYPKGPALRFVREYEScgFDRGFYAGPFGFVG-SGEAEIVVAIRS 72 
                  46789**************************73358*********986.6889999***96 PP

>> TIGR01824  PabB-clade2: aminodeoxychorismate synthase, component I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.5   0.0   1.6e-08   1.3e-05     264     321 ..      16      77 ..       4      99 .. 0.83

  Alignments for each domain:
  == domain 1    score: 22.5 bits;  conditional E-value: 1.6e-08
    TIGR01824 264 dlleAvFPggsiTGaPKvraleiIeelEpt..rRgpytGsvgvidadGdadlnilIRTl...e 321
                   ll+A+ P+ ++ G PK  al+ + e E     Rg y G +g+++  G+a++ ++IR      
  MMETSP1061-20121228|27005_1  16 YLLNALHPTPAVGGYPKGPALRFVREYESCgfDRGFYAGPFGFVG-SGEAEIVVAIRSGlisR 77 
                  589*************************96448**********98.59*********854442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 560.95
//
Query:       MMETSP1061-20121228|27008_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2580.61
//
Query:       MMETSP1061-20121228|27016_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|27018_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       516  (0.125792); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 522.68
//
Query:       MMETSP1061-20121228|27029_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|27036_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 479.33
//
Query:       MMETSP1061-20121228|27032_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1579.32
//
Query:       MMETSP1061-20121228|27028_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   15.3   0.0        1.6    6.9   0.1    2.7  2  TIGR02331 rib_alpha: Rib/alpha/Esp surface antigen repeat


Domain annotation for each model (and alignments):
>> TIGR02331  rib_alpha: Rib/alpha/Esp surface antigen repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0012       4.9      44      78 ..     205     240 ..     200     242 .. 0.79
   2 !    6.9   0.1   0.00039       1.6      23      59 ..     318     355 ..     304     359 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0012
    TIGR02331  44 keavvvVTyPDgtkdeVpvtvhVtdk.rtDadKydP 78 
                  k+a+  VT  Dgt d+   +++  d  +  a  y+P
  MMETSP1061-20121228|27028_1 205 KNATYIVTWSDGTSDTFSNELEWMDLmVFNAKNYEP 240
                  8999************98887777765566666666 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.00039
    TIGR02331  23 Pdgttyewktv.nkvdtntpGdkeavvvVTyPDgtkde 59 
                  P  t ++w    +  d +++G k+++ +VT  Dgtk e
  MMETSP1061-20121228|27028_1 318 PIKTPVSWDFDdGWWDGTITGFKDGTYEVTWSDGTKKE 355
                  666777777766788999******************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.42
# Mc/sec: 1841.56
//
Query:       MMETSP1061-20121228|27038_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.2e-122  406.0   0.0   2.5e-122  405.8   0.0    1.0  1  TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase
    1.7e-45  153.6   0.0    1.2e-44  150.8   0.0    1.9  1  TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase
    0.00075   16.5   0.0     0.0017   15.4   0.0    1.5  2  TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01851  argC_other: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.8   0.0  1.8e-125  2.5e-122       1     310 []      29     344 ..      29     344 .. 0.94

  Alignments for each domain:
  == domain 1    score: 405.8 bits;  conditional E-value: 1.8e-125
    TIGR01851   1 kpkvfidGeaGttGlqirerlaerddlellsidedkrkdaderakllnaadvailclpddaareavslvd..npntkildastayrtaedwvyGfpelaaeqrekianakrvanPGcyatgaiallrPlveaGilPadfPvtinavsGysGGGkaliakyeeesaddskkaafiiyglalehkhlpemrkhsglaskPiftPavGdfaqGllveiplhlaeldskvsaedihkalaeyykGekfvkvaelddael.....ldd.tildaqglngtnrlelfvfgsddgerallvarldnlGkGasGaavqnlnialGl 310
                  k+kvfidGeaGttGlq+r r+  rddle++s  +d rkd + r k++n adv+ilclpd a+ ea  lv+  n +t+++dastayr+ + w+yGfpel+aeqre + ++kr++nPGcy+tg+i l+rPl +aGi+P   P+t+na+sGysGGGk +++ +e e+ d+   +++  yg +l+hkhlpem k+s l +kP+f P++  faqG++v +plh   l++ +++e+ih++l ++y+G +fv v++l ++++     l+   +l +++l +tn++elfvf++d+++++ll+arldnlGkGasGaavqnlnialGl
  MMETSP1061-20121228|27038_1  29 KYKVFIDGEAGTTGLQVRGRIEARDDLEVISPPQDLRKDLETRKKFINDADVVILCLPDAASIEAAGLVEsdNDRTVLIDASTAYRVDDSWTYGFPELSAEQRETLGKSKRISNPGCYPTGFIGLTRPLADAGIIPEGTPLTVNAISGYSGGGKGMMEMFEGEEGDAM--EPWAGYGYSLTHKHLPEMAKYSTLGRKPVFQPQIATFAQGMVVSVPLHYDWLKEGTTGEQIHEVLSKHYEGSNFVSVMPLGESNAkeaglLERgAFLRPDTLKDTNKMELFVFPNDEAQQVLLCARLDNLGKGASGAAVQNLNIALGL 344
                  68******************************************************************972256799************************************************************************************6665555..9*****************************************************************************98765541122155558999*************************************************7 PP

>> TIGR01850  argC: N-acetyl-gamma-glutamyl-phosphate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.8   0.0   8.5e-48   1.2e-44      60     338 ..      70     350 ..      54     351 .] 0.89

  Alignments for each domain:
  == domain 1    score: 150.8 bits;  conditional E-value: 8.5e-48
    TIGR01850  60 eeeeileeadvvflAlphgvsaelvpellekg..vkvidlSadfRlkdaevYekwYgkkhekeelleeavYGlpEln...reeikkaklianPGCyaTaalLalaPllkekliepks.iivdaksGvSgAGrkasekslfae..vnenlkpYkvt.kHrHtpEieqelsklaekkvkvsftphlvpmtrGilati...yaklkkelteeelrklyeevYedepfvrvlk.............egelPstkavlgsnfvdigvavdeetkrvvvvsaiDNLvKGaagqAvqnlNlmlgfdetegL 338
                  + +++ ++advv+l+lp  +s e +  + + +  +++id S ++R++d+                   ++YG pEl    re++ k+k+i+nPGCy+T+ +    Pl+++++i + + + v+a+sG+Sg+G+   e  + +e  ++e    Y  + +H+H pE+++  + l  +k    f p+++ + +G++ ++   y +lk+++t e++++++++ Ye+++fv+v++              g + +      +n +++ v  ++e+++v++++ +DNL KGa+g AvqnlN++lg+det gL
  MMETSP1061-20121228|27038_1  70 TRKKFINDADVVILCLPDAASIEAAGLVESDNdrTVLIDASTAYRVDDS-------------------WTYGFPELSaeqRETLGKSKRISNPGCYPTGFIGLTRPLADAGIIPEGTpLTVNAISGYSGGGKGMMEMFEGEEgdAMEPWAGYGYSlTHKHLPEMAKYST-LG-RKP--VFQPQIATFAQGMVVSVplhYDWLKEGTTGEQIHEVLSKHYEGSNFVSVMPlgesnakeaglleRGAFLRPDTLKDTNKMELFVFPNDEAQQVLLCARLDNLGKGASGAAVQNLNIALGLDETIGL 350
                  3477889***************99976665334599***********76...................9*******87779999*****************************999989*************999988877622456677799989*********9988.44.444..6**************9833355899********************************99999988888999999*************************************************998 PP

>> TIGR01296  asd_B: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   1.2e-06    0.0017      59     167 ..      75     187 ..      62     196 .. 0.77
   2 ?   -2.9   0.0      0.44     6e+02     317     331 ..     322     336 ..     312     344 .. 0.67

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1.2e-06
    TIGR01296  59 fegidialfsaGgsvskefap..kaakagviviDntsafrldedvPLvvpevnaeelkeakkkgiianPnCstiqlvvvLkplkdeaklkrvvvstYqavsG..aGkkgveeL 167
                   ++ d+ + +   + s e a   +  ++ ++ iD + a+r+d+      pe+ ae+ +   k   i+nP C     + + +pl d+  + +    t  a+sG   G kg+ e+
  MMETSP1061-20121228|27038_1  75 INDADVVILCLPDAASIEAAGlvESDNDRTVLIDASTAYRVDDSWTYGFPELSAEQRETLGKSKRISNPGCYPTGFIGLTRPLADAGIIPEGTPLTVNAISGysGGGKGMMEM 187
                  45567777776666666666511444556899*****************************99********************999988876666666666633355666555 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.44
    TIGR01296 317 vaDnlrkGaalnavq 331
                    Dnl kGa+  avq
  MMETSP1061-20121228|27038_1 322 RLDNLGKGASGAAVQ 336
                  469999987766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1654.58
//
Query:       MMETSP1061-20121228|27071_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 521.36
//
Query:       MMETSP1061-20121228|27072_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-06   25.4   0.4     0.0016   16.0   0.1    2.1  2  TIGR00267 TIGR00267: TIGR00267 family protein


Domain annotation for each model (and alignments):
>> TIGR00267  TIGR00267: TIGR00267 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1     4e-07    0.0016       3      67 ..      75     140 ..      73     160 .. 0.78
   2 !    7.7   0.0   0.00014      0.56      95     167 ..     219     291 ..     186     294 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 4e-07
    TIGR00267   3 vvrGlidGalsalGvvlgasgsadd.sviiaaGlgGGvanglsnvlGaliaeraeeerelreleks 67 
                  v+ G +dG l+   +v ga+g+ +  + +++ G++   a +ls  +G +++ +a++e  l e+ ++
  MMETSP1061-20121228|27072_1  75 VIFGGLDGILTSFAIVAGAAGGGLSiTSVLVLGFSNIFADALSMGVGEFLSSKANNEWILSERKRE 140
                  67899******999888776665541456778***********************99777666554 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00014
    TIGR00267  95 dGlstilGsvvPvlPflv..fdvktalivavsltliallvlGvylGrisrenvlisslkvvviglvvavlsllie 167
                   G + +lG    v+P+l   ++++     a ++t ++l+ lG +    sr n + s+ + +++g   a ++  i+
  MMETSP1061-20121228|27072_1 219 FGTAPLLGYT--VIPWLFphLEREVLFRAACLVTGLVLFFLGSIKSNFSRTNWFWSGCETLILGGTCATVAYTIG 291
                  4666666654..566655336677777788999***************************999999888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 1733.07
//
Query:       MMETSP1061-20121228|27086_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-14   51.4   0.1    2.8e-14   51.1   0.1    1.1  1  TIGR01084 mutY: A/G-specific adenine glycosylase


Domain annotation for each model (and alignments):
>> TIGR01084  mutY: A/G-specific adenine glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.1   0.1   6.9e-18   2.8e-14      27      60 ..      56      89 ..      45      91 .] 0.92

  Alignments for each domain:
  == domain 1    score: 51.1 bits;  conditional E-value: 6.9e-18
    TIGR01084 27 dpYkvwlsevmLqqtqvatvlpyferflekfPtv 60
                 + Y+vw+se+mLqqt+v++v+p++ ++++ fPtv
  MMETSP1061-20121228|27086_1 56 TGYGVWVSEIMLQQTRVEAVIPFWIKWMKSFPTV 89
                 57*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 632.16
//
Query:       MMETSP1061-20121228|27110_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 667.28
//
Query:       MMETSP1061-20121228|27121_1  [L=340]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-89  297.6   0.0    2.4e-89  297.3   0.0    1.0  1  TIGR00670 asp_carb_tr: aspartate carbamoyltransferase
    1.6e-41  140.3   0.0    1.9e-41  140.0   0.0    1.0  1  TIGR00658 orni_carb_tr: ornithine carbamoyltransferase
    9.1e-10   36.3   0.5    1.4e-07   29.0   0.3    3.4  1  TIGR03316 ygeW: probable carbamoyltransferase YgeW


Domain annotation for each model (and alignments):
>> TIGR00670  asp_carb_tr: aspartate carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  297.3   0.0   1.8e-92   2.4e-89      15     303 ..      46     335 ..      41     336 .. 0.95

  Alignments for each domain:
  == domain 1    score: 297.3 bits;  conditional E-value: 1.8e-92
    TIGR00670  15 elllekaeelkqklsskekskalkgkivaalFfEpSTRTrlSFetaakrlggsvvnlsdseasSvaK.gEtlaDTikvleaysvdiiviRhrlegaarliaevaevpviNaGdGknqHPtQtLLDlyTileefgrldglkvalvGDlkygRtvhSlvkaLalfgve....vylvaPeeLrlpkeileelkkkgvkvketesleevleeaDvlyvtRiQkERlpdleeleklkeaykitkerlealkkevkvlHPlPvnrvdeiesevldtekaklfkQaknGvavRmallelll 303
                  ++l++ a+++++ ++s+    +lk+k++a++F+E+STRT  SF+ a+ rlgg+ ++++ + +sS+aK  Etl DTi+ le y vd+iv+Rh+l g   ++   +  pv+NaGdG ++HPtQ+LLD +Ti +e  + d + v ++GDlk+gRtvhSl+k L+ + ++    + +++P++L++p++++e  +++gv+++++e  +e+ + a vlyvtR+QkER++ +e +e++k++y i+k  ++ ++k+++vlHPlP  rvdei++ev+ +++a++f+Q++nG+ vRmall+l++
  MMETSP1061-20121228|27121_1  46 DFLIKVAQQMRDIVRSEGGDGRLKHKLLATVFYEASTRTACSFQAAMMRLGGKFLHVDGNGNSSAAKkKETLEDTIRCLECY-VDAIVLRHPLTGSVPKVVRATTKPVLNAGDGIGEHPTQALLDSFTIWDEL-KADPKVVVFLGDLKHGRTVHSLAKLLSQLRAQsnlvLRFCSPSSLKVPEYVMEYCQNNGVTTEVFEDPNEACKGAQVLYVTRVQKERFETEEAYESVKGSYVIDKAFMDMAPKDMIVLHPLP--RVDEITTEVDADPRAAYFRQMENGMYVRMALLALIM 335
                  789999***********8878***************************************999987659*************.**********999999999999*************************998.5789999*******************99874423337899**********************************************************************************..*********************************997 PP

>> TIGR00658  orni_carb_tr: ornithine carbamoyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.0   1.4e-44   1.9e-41      13     303 ..      44     335 ..      34     336 .. 0.86

  Alignments for each domain:
  == domain 1    score: 140.0 bits;  conditional E-value: 1.4e-44
    TIGR00658  13 elkellelakklkkekkkgkeekklkgktlaliFekrstRtRvsfevaayelGaqvlylnk..eelqlgrkesikDtarvlsryvdaivvRvykhedveelakyasvPvingLtd.lehPcqilaDlltikeklgklkevklvyvGDa..nnvansll....laaaklGldvvvatPeglepeaeivkkakkiakenggkleltedpkkavkdadviy.tDvwvsmGeeekkeerlkllk.pyqvneellelakpevkflhCLPavrGeevtdevlegeasivfdeaenRlhaqkavlkall 303
                   +  l+++a++++   +++  + +lk k la +F+ +stRt +sf++a+++lG++ l+++   +++   +ke+++Dt r l+ yvdaiv+R      v ++ + ++ Pv+n+     ehP+q+l D +ti+++l++  +  +v++GD      ++sl        a+  l ++ ++P  l+  + +++ +    ++ng + e+ edp++a k+a+v+y t v     e  ++ee  + +k  y +++ ++++a +++++lh LP+v   e+t ev   ++   f + en +++ +a+l++++
  MMETSP1061-20121228|27121_1  44 GFDFLIKVAQQMRDIVRSEGGDGRLKHKLLATVFYEASTRTACSFQAAMMRLGGKFLHVDGngNSSAAKKKETLEDTIRCLECYVDAIVLRHPLTGSVPKVVRATTKPVLNAGDGiGEHPTQALLDSFTIWDELKADPK-VVVFLGDLkhGRTVHSLAkllsQLRAQSNLVLRFCSPSSLKVPEYVMEYC----QNNGVTTEVFEDPNEACKGAQVLYvTRVQ---KERFETEEAYESVKgSYVIDKAFMDMAPKDMIVLHPLPRVD--EITTEVDADPRAAYFRQMENGMYVRMALLALIM 335
                  567799************999*************************************976115778899*****************************************8765259**************9986555.599****754556777651111345666788999*************999....569********************933333...4555566666665527**********************998..*****************************9887 PP

>> TIGR03316  ygeW: probable carbamoyltransferase YgeW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.3   1.1e-10   1.4e-07      17     107 ..      45     137 ..      36     334 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 1.1e-10
    TIGR03316  17 leavldvaaalkalraenistkllesglgislfrdnstrtrfsfasalnllGleaqdlde.g.ksqiahGetvretaevisfladaiGirddm 107
                  ++ +++va++++     +     l+ +l  ++f++ strt  sf++a+  lG++  ++d  g  s   + et  +t++ +  + dai +r+ +
  MMETSP1061-20121228|27121_1  45 FDFLIKVAQQMRDIVRSEGGDGRLKHKLLATVFYEASTRTACSFQAAMMRLGGKFLHVDGnGnSSAAKKKETLEDTIRCLECYVDAIVLRHPL 137
                  67789999999987666666677899****************************9999852414556679*****************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (340 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1495.88
//
Query:       MMETSP1061-20121228|27137_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 252.50
//
Query:       MMETSP1061-20121228|27148_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.25
# Mc/sec: 348.45
//
Query:       MMETSP1061-20121228|27140_1  [L=499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.3e-120  398.5   0.0   8.5e-120  398.3   0.0    1.0  1  TIGR00928 purB: adenylosuccinate lyase
    1.9e-30  103.8   0.0    2.4e-30  103.4   0.0    1.1  1  TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase
    1.9e-06   25.0   0.0      3e-06   24.3   0.0    1.3  1  TIGR00838 argH: argininosuccinate lyase
    1.8e-05   21.5   0.0    2.7e-05   21.0   0.0    1.2  1  TIGR00979 fumC_II: fumarate hydratase, class II
    3.6e-05   20.7   0.0    5.1e-05   20.2   0.0    1.2  1  TIGR00839 aspA: aspartate ammonia-lyase


Domain annotation for each model (and alignments):
>> TIGR00928  purB: adenylosuccinate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  398.3   0.0    1e-122  8.5e-120       2     435 ..      31     473 ..      30     474 .. 0.96

  Alignments for each domain:
  == domain 1    score: 398.3 bits;  conditional E-value: 1e-122
    TIGR00928   2 deRYaskemraiwseenklkkrlkvevallralaelg.lipaeavekikekasfdevdlerikeiEketkHDvkAvvkalkekvgaesefiHfGlTSedivdtaealllrealeiilkklkklieelkekaeeykdtvmlgrtHgqhAepttlGkklalwaeelkrqlerLkeakerikvggisGavgtqaaaleev.......eeveelvtelLGlktalist.QiiqrdrhaellaalallaatleklavdirllqrtevleveekfekgqvGSSaMPhKrNpidsErveGlarvirsvlsaalekv.vlwheRdltdSsveRviLpdsliladiilksllkvvkkLvvypenikrnLelelgllasekvlielvekglgreeayeivkelamkaae.....veeedlkelvkedeeitkelkeeelaelldpetyigaaaeivekv 435
                   +RYa+kem+ +ws  +k+ +++k++ al+ a++elg  i++e++e+++ +  fd  d e  +++E+e++HDv+ +v+a+ +++ ++  +iH+G+TS+ + d+ + +++r+al +i +kl+++i++lk++a++y+d++ lg tH q+A+ tt+Gk+ +lw++el+ ++er     er+ ++g++G++gtqa +le +       ++++++v+el+G+++  +++ Q++ r+++  +l++l+ +a+++ k+  dirll++  ++evee+f+k q+GSSaM++KrNp++sEr ++lar + ++ s a++++  +w+eR+l+dS+++RviLp++++++d++l+ l ++ ++L v+pe++k+ +  el+++ +e +l+e v++g  r+e +e+++ ++m a +     ++ +dl e++++d+ + +  ++ +   l+dp+ ++g+a+e+v+++
  MMETSP1061-20121228|27140_1  31 VKRYATKEMSFVWSPAKKFTTWRKLWTALATAEQELGvEITDEQLEEMRSH-LFD-IDFELAEKKEREFRHDVMGHVHAFGDAAPKAMPIIHLGATSCYVGDNTDIIQIRDALYLIKRKLVQVISILKDFAVKYRDLPTLGFTHYQPAQLTTVGKRCCLWMQELMMDYERVVLEIERLPMRGVKGTTGTQATFLELFegdhekvKALNKRVCELMGFEKSIAVSgQTYTRKIDFTVLSVLSGIAQSAYKMCGDIRLLAN--LKEVEEPFAKTQIGSSAMAYKRNPMRSERCCSLARYVMGLPSGAANTAaNQWFERTLDDSAIRRVILPEGFLATDVVLTLLANIGDGLHVWPEVVKAHVMAELPFMSTEVILMECVKAGGDRQELHEAIRVHSMDAGAvvkgeGKPNDLMERIAKDPIFAAVHDKLDT--LVDPKLFVGRAPEQVDEF 473
                  68***********************************77999999999888.665.789****************************************************************************************************************************************99****9999***************99888*********************************9..***********************************************999*************************************************************************************988888888999**********55555554444..8***************97 PP

>> TIGR02426  protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.4   0.0   2.9e-33   2.4e-30       7     334 ..      35     371 ..      30     375 .. 0.83

  Alignments for each domain:
  == domain 1    score: 103.4 bits;  conditional E-value: 2.9e-33
    TIGR02426   7 gdseaaelfsdrarlramldvEaalaraqadvGl.ipaeaaeaiaaaaaelalDlealaeaaaeagnvviplvkalrkavaeeaaryvHlGaTSQDviDTalmLqlrdaldllladlerlaeaLaelaarhrdtpltarTllQqAvpttvglkaagwlaavlrardrle.alrtealalqfGGAaGtlaa.lekkg......lavaealAaelgLeapalp.Whtqrdri.aelaaaLalvagalgkiaqDvallaqt.evgevleaggGGSSampHKrNPvaaevlaaaarrapglvatLfa.alaqedeRsaggWhaeWetLrelvaltagalrqaael 334
                  +++e++ ++s + +++   ++ +ala a+ ++G+ i +e  e++++      +D e  +++ +e    v++ v+a+  a   +a   +HlGaTS  v D + ++q+rdal l++++l +++ +L++ a + rd p ++ T  Q+A+ ttvg++   w++ +    +r+  +++ ++      G +Gt a  le          a+++++ + +g e++ ++  +t   +i  ++ ++L+ +a +  k+ +D+ lla++ ev+e + ++  GSSam+ KrNP ++e + ++ar + gl ++  + a++q  eR++    +   +L+e + +t + l+  a++
  MMETSP1061-20121228|27140_1  35 ATKEMSFVWSPAKKFTTWRKLWTALATAEQELGVeITDEQLEEMRSHLF--DIDFELAEKKEREFRHDVMGHVHAFGDAA-PKAMPIIHLGATSCYVGDNTDIIQIRDALYLIKRKLVQVISILKDFAVKYRDLPTLGFTHYQPAQLTTVGKRCCLWMQELMMDYERVVlEIE-RLPMRGVKGTTGTQATfLELFEgdhekvKALNKRVCELMGFEKSIAVsGQTYTRKIdFTVLSVLSGIAQSAYKMCGDIRLLANLkEVEEPFAKTQIGSSAMAYKRNPMRSERCCSLARYVMGLPSGAANtAANQWFERTLDDSAIRRVILPEGFLATDVVLTLLANI 371
                  4789999999999999999**************6366666666666555..778877778888888999*******9876.78889*************************************************************************99877777651444.45555689*****999766533466777899999*******9986541455433332567799******************99638999999999****************************99988856777789998888888888888777777777666655 PP

>> TIGR00838  argH: argininosuccinate lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   3.7e-09     3e-06     117     288 ..     135     315 ..      67     330 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 3.7e-09
    TIGR00838 117 lylrdkvkelaealkdllkalvekAekevetlmpgytHLqrAqPitlaHhllayaemlerDleRlldalkRvnksPl....GsgAlagtsfeidrella.......elLgFdavvensldavsdR.DfiiEllsaaallmvhlsrlaEelilfsseEfgfvels.devssgssimPqKKnpDvaE 288
                  + +rd++  ++++l ++++ l + A k  +    g+tH q Aq +t++  +  +++ l  D+eR++  ++R+    +    G+ A     fe d e+++       el+gF++ ++ s ++ + + Df   +ls+++ ++++  +++ ++ l +    + ve +  ++  gss m  K+np   E
  MMETSP1061-20121228|27140_1 135 IQIRDALYLIKRKLVQVISILKDFAVKYRDLPTLGFTHYQPAQLTTVGKRCCLWMQELMMDYERVVLEIERLPMRGVkgttGTQATFLELFEGDHEKVKalnkrvcELMGFEKSIAVSGQTYTRKiDFT--VLSVLSGIAQSAYKMCGDIRLLAN--LKEVEEPfAKTQIGSSAMAYKRNPMRSE 315
                  56899999*********************************************************99999987654321115666555667777665431222222899***99999987755333776..589999999999******988876..444444315667799*******997665 PP

>> TIGR00979  fumC_II: fumarate hydratase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   3.3e-08   2.7e-05     161     355 ..     148     342 ..     133     393 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 3.3e-08
    TIGR00979 161 leklkktldekskefkeivkiGrthlqdatPltlgqefsgyvaqlekslerieeslkklselalGgta..vGtGlnakkefaekvaeelakltgekfvtapnkfealaahdal.veahGalkalaasllkiandirflasGPrcGlgell..lPenePGssimPGkvnPtqsealtmvcaqvlGndatialagsqGnfel 355
                  l ++ ++l++ + ++++   +G th q a   t+g+    +++ l    er+   +++l    + gt+    t l+  ++ +ekv    +++ +      +   +  +   ++  ++  +l  +a s  k+  dir+la      l+e+   + + + Gss m  k nP +se    ++  v+G  +  a ++++  fe 
  MMETSP1061-20121228|27140_1 148 LVQVISILKDFAVKYRDLPTLGFTHYQPAQLTTVGKRCCLWMQELMMDYERVVLEIERLPMRGVKGTTgtQATFLELFEGDHEKVKALNKRVCELMGFEKSIAVSGQTYTRKIdFTVLSVLSGIAQSAYKMCGDIRLLAN-----LKEVEepFAKTQIGSSAMAYKRNPMRSERCCSLARYVMGLPSGAANTAANQWFER 342
                  567778899999***********************************************98887776411456778888888888766666655544444445555555555514556899*****************96.....5555511668899**************************8877777777766665 PP

>> TIGR00839  aspA: aspartate ammonia-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.2   0.0   6.2e-08   5.1e-05     149     343 ..     140     330 ..     118     394 .. 0.73

  Alignments for each domain:
  == domain 1    score: 20.2 bits;  conditional E-value: 6.2e-08
    TIGR00839 149 avyesleklvdkiealrdafeqkakefadvlkmGrtqlqdavpltlGqefeayalllerdvkrikrtrell..levnlGat.aiGtGl...nadkeysklvvkklaevtGlplvpaenlieatsdtgayvevsgalkriavklskvcndlrllssGpraGlneinlp..elqaGssimpakvnpvvpevvnqvcfkviGndtt 343
                  a+y    klv+ i  l    ++ a++++d+  +G t+ q a   t+G+    +   l  d +r+    e l  + v  G+t +  t l   + d+e  k + k++ e+ G+    a      t++ +   +v ++l  ia    k+c d+rll+      l+e++ p  + q Gss m  k np+ +e    ++  v+G  + 
  MMETSP1061-20121228|27140_1 140 ALYLIKRKLVQVISIL----KDFAVKYRDLPTLGFTHYQPAQLTTVGKRCCLWMQELMMDYERVVLEIERLpmRGVK-GTTgTQATFLelfEGDHEKVKALNKRVCELMGFEKSIAVSGQTYTRKID--FTVLSVLSGIAQSAYKMCGDIRLLA-----NLKEVEEPfaKTQIGSSAMAYKRNPMRSERCCSLARYVMGLPSG 330
                  4455555555555555....556888999999****************99999887777777766555554114443.33312233331126789999999**********9999987777777766..57889*******************5.....699998775589**************999999888888886555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.52
# Mc/sec: 1266.59
//
Query:       MMETSP1061-20121228|27166_1  [L=446]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.4   0.4      0.046   11.3   0.3    1.5  1  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain


Domain annotation for each model (and alignments):
>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.3   1.1e-05     0.046      21      34 ..     236     249 ..     233     251 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
    TIGR02098  21 inggkVRCgkCghv 34 
                  +++++VRC +Cgh+
  MMETSP1061-20121228|27166_1 236 GANKVVRCMNCGHR 249
                  6899********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (446 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.60
# Mc/sec: 981.12
//
Query:       MMETSP1061-20121228|27174_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 407.97
//
Query:       MMETSP1061-20121228|27182_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 2301.20
//
Query:       MMETSP1061-20121228|27186_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-15   54.4   0.1    5.1e-15   53.6   0.0    1.3  1  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
    1.4e-05   22.4   0.0    2.1e-05   21.8   0.0    1.2  1  TIGR03448 mycothiol_MshD: mycothiol synthase
    1.7e-05   21.4   0.0      4e-05   20.2   0.0    1.5  2  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
    8.8e-05   20.0   0.0    0.00014   19.3   0.0    1.2  1  TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase
     0.0058   14.0   0.0     0.0099   13.3   0.0    1.3  1  TIGR04045 MSMEG_0567_GNAT: putative N-acetyltransferase, MSMEG_0567 N-terminal domain family
  ------ inclusion threshold ------
      0.013   13.4   0.0      0.076   10.9   0.0    1.9  2  TIGR02406 ectoine_EctA: diaminobutyrate acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   7.5e-18   5.1e-15      32     130 ..     130     227 ..     118     229 .. 0.86

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 7.5e-18
    TIGR01575  32 aeyllaeeggkvvGyivvqivldeaeilniavkpeyqgqGiGraLlkelikeakergvkeifLEVResNvaAqaLYkk.lgfkeialrknYYkdseedAl 130
                  ++y  ++ g+k +G +   + ++++ i  +av++ ++++GiG+ L+++++k++  rg+++++LE  +sNv+Aq+LY+  +gf +++l  +YY + + dA+
  MMETSP1061-20121228|27186_1 130 QQYDSKHVGDKAAGSA-ETFAIQTGYIGMLAVSKSFRRKGIGKDLVRQVLKRMLARGCTSVTLETEVSNVTAQKLYQNhFGFIREELLVRYYLNCG-DAY 227
                  5566666666666654.457789999**************************************************8627************9998.887 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0   3.1e-08   2.1e-05     230     293 ..     154     218 ..     138     219 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 3.1e-08
    TIGR03448 230 EvYvvgvdpaaqgrGLGkaLtliGlkhleerglravlLYveadneaAvrtYek.LgFtvaevdva 293
                   + +++v+++ +++G+Gk L++  lk + +rg ++v L +e  n++A ++Y++  gF + e  v 
  MMETSP1061-20121228|27186_1 154 YIGMLAVSKSFRRKGIGKDLVRQVLKRMLARGCTSVTLETEVSNVTAQKLYQNhFGFIREELLVR 218
                  455799*********************************************85389988776665 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       0.6   4.1e+02     126     142 ..      62      78 ..      58      85 .. 0.84
   2 !   20.2   0.0   5.8e-08     4e-05     160     213 ..     157     211 ..     145     219 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.6
    TIGR03103 126 lvaedeesgeivGtvmg 142
                  ++a+d++sge+ G v+g
  MMETSP1061-20121228|27186_1  62 ILAVDSKSGEVCGCVVG 78 
                  6899*********9987 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 5.8e-08
    TIGR03103 160 alavdpqaakpGvGealvralaehfqarglayldlsvlhdneqaialye.klgfr 213
                   lav+++ ++ G+G+ lvr++ +++ arg++++ l     n +a +ly+  +gf 
  MMETSP1061-20121228|27186_1 157 MLAVSKSFRRKGIGKDLVRQVLKRMLARGCTSVTLETEVSNVTAQKLYQnHFGFI 211
                  79**********************************************7246775 PP

>> TIGR02382  wecD_rffC: TDP-D-fucosamine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   2.1e-07   0.00014     125     176 ..     154     205 ..     143     214 .. 0.93

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 2.1e-07
    TIGR02382 125 riGllavfpgvqirGiGarlmaaakawarrrGltrlrvatqvgnvaalrlyi 176
                   iG+lav    + +GiG +l+    +    rG t + + t+v+nv+a +ly 
  MMETSP1061-20121228|27186_1 154 YIGMLAVSKSFRRKGIGKDLVRQVLKRMLARGCTSVTLETEVSNVTAQKLYQ 205
                  69************************************************96 PP

>> TIGR04045  MSMEG_0567_GNAT: putative N-acetyltransferase, MSMEG_0567 N-terminal domain family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.5e-05    0.0099      72     119 ..     152     198 ..     139     214 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.5e-05
    TIGR04045  72 lWyGsRLaveaafRrlgkiGktLirlavstakalGcrrflatvqsqnv 119
                  + y + Lav+++fRr+g iGk L+r+   +  a+Gc+    +    nv
  MMETSP1061-20121228|27186_1 152 TGYIGMLAVSKSFRRKG-IGKDLVRQVLKRMLARGCTSVTLETEVSNV 198
                  557799********987.9*****************988777666666 PP

>> TIGR02406  ectoine_EctA: diaminobutyrate acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.26   1.8e+02      28      63 ..      48      84 ..      30      92 .. 0.71
   2 ?   10.9   0.0   0.00011     0.076      68     120 ..     154     206 ..     143     223 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.26
    TIGR02406 28 Yaylllaedfaetsiva.eeeggeikgfvsgylkper 63
                 ++y  + + + + +i+a +++ ge+ g v g +  e+
  MMETSP1061-20121228|27186_1 48 FTYRYFLNRYPDLCILAvDSKSGEVCGCVVGKIDVEN 84
                 4455566889999999734677899999998776655 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00011
    TIGR02406  68 fvWqvaveekarGkglakrlleallerealeevks..vEatitpdneAskalFkk 120
                  ++   av++++r kg++k l+ ++l+r  ++   s  +E+    +n  +++l+++
  MMETSP1061-20121228|27186_1 154 YIGMLAVSKSFRRKGIGKDLVRQVLKRMLARGCTSvtLETE--VSNVTAQKLYQN 206
                  566689*********************98888888445555..467777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1437.21
//
Query:       MMETSP1061-20121228|27198_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       232  (0.0565578); expected 82.0 (0.02)
Passed bias filter:                      165  (0.0402243); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 452.53
//
Query:       MMETSP1061-20121228|27199_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.39
# Mc/sec: 615.95
//
Query:       MMETSP1061-20121228|27227_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.36
# Mc/sec: 249.31
//
Query:       MMETSP1061-20121228|27232_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0001   19.4   3.4     0.0016   15.4   2.4    2.0  1  TIGR00820 zip: ZIP zinc/iron transport family


Domain annotation for each model (and alignments):
>> TIGR00820  zip: ZIP zinc/iron transport family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   2.4   3.9e-07    0.0016      58     297 ..       4     298 ..       1     319 [. 0.71

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.9e-07
    TIGR00820  58 aFaaGvilatgfvHvlpeafealsspcleetewkkfpfagfialisailtllvDllatsyyerkkekg..dagseeikvv................................dgeeeeaga...............................dkhakesaedevkeeeeeeqllrqrvvaqvLelGiivHsvviGlslGasqskdtik...aLiaaLsFHqlFeGlglGgcisqaefkakkvvilavffavttPlgiaiGlavsssydeespkAliveGlLnalsaGiLiYmaLvdllAadFlskklq 297
                  aF+aG +l  ++  +l+++ +a++s  l+ +e k+  +  +  + + ++ l++D+l  + +  + +++    +s+ +  +                                +  eee  a                                  a   a ++ +e++e++ +l+++     + + i +H    G+   ++  +d ++   +L +a+  H + eGl +   +  a  ++  +++  +f ++t Plg  i +     ++++     + +G++ ++  G+++ + + +ll a F      
  MMETSP1061-20121228|27232_1   4 AFTAGTMLYVSLTDILEKSANAFASSSLDLEEGKHVIYGKLSFFAGVLVMLVIDSLVEKLLAWDLKRAqeRCSSNVV--TlvdgvgvgvgvvpdgetlnkmredfenkvkekE--EEE--AkkgdaeaaakpdqalavvdlekpdeerptaaGGGADDGAVVSAAEDNEKTFVLKHMG--WAMAVAIALHNFPEGMVTYMAYTEDDASvafPLAIAIALHNIPEGLCVAMPLYYATGRRWYAFCWGTFSGLTEPLGALIVF-----FTSSKSMSRVADGIVFGMVGGMMVAICIGQLLPAAFKYSSNA 298
                  89***********************9999977777777777777777888899999999887666655212333333..2347788999999999999999999888876431..222..1335678888899999999999998888754433333333444455455555555554..45678899999999987555544444332249********************************************77643.....444444555778888888999999999999998888554433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       278  (0.0677718); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 1033.38
//
Query:       MMETSP1061-20121228|27248_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|27255_1  [L=461]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (461 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 2340.27
//
Query:       MMETSP1061-20121228|27264_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|27256_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 1313.61
//
Query:       MMETSP1061-20121228|27278_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   11.5   0.0      0.023   11.4   0.0    1.0  1  TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE
      0.022   11.5   0.1      0.026   11.3   0.0    1.0  1  TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family


Domain annotation for each model (and alignments):
>> TIGR02213  lolE_release: lipoprotein releasing system, transmembrane protein LolE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.1e-05     0.023     122     177 ..      35      90 ..      26      99 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.1e-05
    TIGR02213 122 kvsalssfvqeqawskfkkgenqvivgkgvadeldvkvgdyvtllipqsneeekla 177
                  kvs+ s     q  +   +  + v+ g+g + e ++ vgd + +++p++n+ e++ 
  MMETSP1061-20121228|27278_1  35 KVSSASTTSTIQNGTGRITSSGTVVSGHGTTFEKEISVGDAILVILPNQNKTEEMR 90 
                  555554433333333333447899**************************998775 PP

>> TIGR02212  lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.3e-05     0.026     127     182 ..      42      95 ..      26      99 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.3e-05
    TIGR02212 127 snnvkqgklkklkeGeykiiiGeqlAekLgvkvGdkvrliipesketplgevprqk 182
                  ++ +++g+ +  +  + +++ G++   + +++vGd + +i p++++t+ +++ +++
  MMETSP1061-20121228|27278_1  42 TSTIQNGTGRITS--SGTVVSGHGTTFEKEISVGDAILVILPNQNKTEEMRIVTMR 95 
                  2333333333333..44799***************************999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 549.95
//
Query:       MMETSP1061-20121228|27295_1  [L=589]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (589 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.25
# Mc/sec: 3109.66
//
Query:       MMETSP1061-20121228|27324_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   21.0   0.1    4.3e-05   20.3   0.0    1.4  1  TIGR00115 tig: trigger factor
    0.00011   19.5   0.1    0.00036   17.7   0.0    1.7  2  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR00115  tig: trigger factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   2.1e-08   4.3e-05     173     219 ..     129     175 ..      98     207 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 2.1e-08
    TIGR00115 173 aedfelelgsgqfipgfeeqlvGmkaGeekeikvtFpedyhaeelag 219
                   e+f ++ ++++++pgfee+l Gmk+G +++i +  ++ y ++ ++g
  MMETSP1061-20121228|27324_1 129 SESFICKTNANKILPGFEEGLKGMKVGGKRTIRIPPNKGYGDQWYKG 175
                  57899999************************998666666655555 PP

>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.22   4.4e+02       6      28 ..      29      51 ..      23      61 .. 0.77
   2 !   17.7   0.0   1.8e-07   0.00036     120     175 ..     137     192 ..     130     194 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.22
    TIGR03516  6 avlllvllllgCkepeaRrPisr 28
                 ++lll+ll+++  +  a  P s+
  MMETSP1061-20121228|27324_1 29 SLLLLALLAASTTTTSAFAPSSS 51
                 56899999999998888887665 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 1.8e-07
    TIGR03516 120 dqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllni 175
                  + ++++ G+ +glk mk g + t+ +P  k+yG   ++  i +n  ++ +  l +i
  MMETSP1061-20121228|27324_1 137 NANKILPGFEEGLKGMKVGGKRTIRIPPNKGYGDQWYKGTIPPNSHLQFECELISI 192
                  55789*****************************************9999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.35
# Mc/sec: 874.90
//
Query:       MMETSP1061-20121228|27327_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.8e-106  353.4   0.0   4.8e-106  353.1   0.0    1.1  1  TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase
      3e-17   60.7   0.0    4.6e-17   60.1   0.0    1.3  1  TIGR00761 argB: acetylglutamate kinase


Domain annotation for each model (and alignments):
>> TIGR01890  N-Ac-Glu-synth: amino-acid N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.1   0.0  2.4e-109  4.8e-106       1     428 [.     134     596 ..     134     597 .. 0.91

  Alignments for each domain:
  == domain 1    score: 353.1 bits;  conditional E-value: 2.4e-109
    TIGR01890   1 fvkwlreaaPyinahrdktlvvglggelve..dknlgklvadiallhslGvrlvlvhGarpqieerlakrgrt..thyvrGlrvtdeaslelvkeaaGelrlaiearlsmsla........ntpmagsrl...svvsGnfvtarPiGvveGvdyehtGevrkidaegirrlldersivllsPlgfsvtGeifnlamedvatsvaiklkadklillteedGildad..Gklvaelsaqeveslverleeet..................tarllsa..avkalrgGvarshlvsyaedGallqelftrdGiGtlvskealesireatiddvggilelirPleeqGilvrrsrellereieefsviekdGliigcaalypyaeeevgelaclavsPeardggrGerllkhiedrarqvGlkrlfvlttrtehWfrerGfaeasvdelPearrklynyqrrskilvkk 428
                  f++++r +a yi +hr+   v  ++g+l++     + +l++di+l   lG+++v+v G+r qi++rl++++ +   h + G+ vtd+ sl  vke aG +r ++e +l+ +l+        n   +g ++   +vvsGnf  a+P Gv++Gvdy+++G vr+++++ i++ l++r+ivll+ lgfs+tGe+fn+++e  a+++a +l+a k+i++ e++  l+++  G  + +l+ ++ ++l++  +  t                  +  l++    +kal++Gv+r+hl+s   +G llqel+trdG Gt++s + ++ i+ at++dv  i+e+i Pl ++G+lv+r +  le +i+++ v  +dGl+i+c  l+ + e++ +e+ cl v+P +r  grG+ +l  +e    q G +++fvl+t+t +Wf erGf e++v+ lP +r+  yn++r ski++kk
  MMETSP1061-20121228|27327_1 134 FIEMFRGSANYIATHRNALAVFHIPGDLMDlnPAGFRDLMDDISLSWLLGMKIVIVAGCRYQIDKRLKEQHGEgyRHEHMGMVVTDHESLRIVKEEAGYVRFEVERQLARALKsgqghrsdNGNGNGVHVgegNVVSGNFYSAQPFGVLNGVDYKFSGFVRRLETNKIQQVLNNRDIVLLTTLGFSPTGEVFNVNSEYLAAHAAGALGASKVIYFLEKNAALRHKvhGSTIPHLRVNDGRNLLDMNGIRTetkgfvyldncpydygaeQLFLIKMgwGMKALKAGVKRVHLISP-YNGGLLQELYTRDGAGTMISGDLYDGIQPATVNDVNSIFEVITPLVNKGTLVERTKAALESDIDQYHVYTRDGLLIACGQLKMF-EDGYAEFGCLVVNPLYRSKGRGDAMLGYLERLCVQNGARKMFVLSTQTMEWFVERGFDEVGVECLPPSRQATYNHDRASKIYMKK 596
                  7899***********************9862156799********************************99872257789*****************************99972222111112223344444489***********************************************************************************99987643499*********999987654444449************99655555542259*************96.5799******************************************************************************98.5689*******************************************************************************98 PP

>> TIGR00761  argB: acetylglutamate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.1   0.0   2.3e-20   4.6e-17       4     208 ..     155     382 ..     152     389 .. 0.82

  Alignments for each domain:
  == domain 1    score: 60.1 bits;  conditional E-value: 2.3e-20
    TIGR00761   4 iKiGGaais...elleelakdiaklrkegiklvivHGGgpeinelleklgievefvngl..RvTdketlevvem...vligkvnkelvallek......hgikavGltgkDgqlltaekldke........dlgyvGeikkvnkelleallkagiipviaslaldeegqllNvnaDtaAaelAaaleAekLvlLtdvaGileg.dkksliseleleeieqlikqavik 208
                  + i G +++      ++l++di  ++  g+k+viv G   +i+++l+++  e    +++   vTd+e l +v+     +  +v+++l  +l+        + +  G+  + g+++ ++    +        d++++G + +++++ ++++l++  i  +++l+++ +g+++Nvn   +Aa+ A al+A k+++  +++  l++  + s i +l++++ ++l+  + i+
  MMETSP1061-20121228|27327_1 155 FHIPGDLMDlnpAGFRDLMDDISLSWLLGMKIVIVAGCRYQIDKRLKEQHGEGYRHEHMgmVVTDHESLRIVKEeagYVRFEVERQLARALKSgqghrsDNGNGNGVHVGEGNVVSGNFYSAQpfgvlngvDYKFSGFVRRLETNKIQQVLNNRDIVLLTTLGFSPTGEVFNVNSEYLAAHAAGALGASKVIYFLEKNAALRHkVHGSTIPHLRVNDGRNLLDMNGIR 382
                  5566666665444568999******************************9998766655449**********85332233369******998622211145678999999999999995555567888888***********************************************************98877777777765677799999999999988877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 1923.27
//
Query:       MMETSP1061-20121228|27337_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.06   10.4  57.4      0.074   10.1  39.8    1.1  1  TIGR02794 tolA_full: protein TolA


Domain annotation for each model (and alignments):
>> TIGR02794  tolA_full: protein TolA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1  39.8   1.8e-05     0.074     114     190 ..       2      75 .]       1      75 [] 0.48

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 1.8e-05
    TIGR02794 114 aeeaakekeekkkqaeeakakqaaEakakaeaeaKaekkakeeAakkaEeeakakaaaeakkkaEaeeakkkaeaea 190
                  ae++ak+++e+k++aee++++ +aE k+kae+e+++e+  k+eA+++a ee+ ++ +aeak+kaE  eakk+ eaea
  MMETSP1061-20121228|27337_1   2 AEAKAKAEAEAKRKAEEERRRLEAESKRKAEEEKRREEEMKAEARRRANEER-KRLEAEAKAKAE--EAKKRLEAEA 75 
                  3444444444444444555555555555555554444444445555555555.555555555555..4555555554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       478  (0.116529); expected 82.0 (0.02)
Passed bias filter:                      254  (0.061921); expected 82.0 (0.02)
Passed Vit filter:                        61  (0.0148708); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 366.64
//
Query:       MMETSP1061-20121228|27380_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 2211.82
//
Query:       MMETSP1061-20121228|27382_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-31  107.1   0.0    3.6e-31  106.7   0.0    1.2  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    6.8e-20   68.9   3.4    8.9e-20   68.5   2.4    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
     0.0008   17.4   0.2     0.0013   16.7   0.1    1.2  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.7   0.0   2.6e-34   3.6e-31       1      77 [.       9      92 ..       9     137 .. 0.77

  Alignments for each domain:
  == domain 1    score: 106.7 bits;  conditional E-value: 2.6e-34
    TIGR02349  1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggagg.......g 77
                 dYY+iLgv+++As++eikkAY+kla k+HPD+n+g+++a + f++i+eAy  Lsd++kr+ YD +g++++++++         g
  MMETSP1061-20121228|27382_1  9 DYYQILGVPRSASDSEIKKAYKKLAVKWHPDKNPGDEQATTNFQKISEAYATLSDDKKRKIYDAYGKEAADQSENMpdghpmgG 92
                 9*********************************************************************99765543333331 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   2.4   6.5e-23   8.9e-20       3      76 ..       9      83 ..       7      86 .. 0.95

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 6.5e-23
    TIGR03835  3 DyyevLgidrDadeqeikkafrkLakkyhPDrnka.adaakifaeineandvLsnPkkraryDkyGhDGvDredd 76
                 Dyy +Lg+ r a ++eikka++kLa k+hPD+n    +a   f+ i ea+  Ls+ kkr+ yD yG +  D+ ++
  MMETSP1061-20121228|27382_1  9 DYYQILGVPRSASDSEIKKAYKKLAVKWHPDKNPGdEQATTNFQKISEAYATLSDDKKRKIYDAYGKEAADQSEN 83
                 9********************************87699******************************9998765 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   9.3e-07    0.0013       6      53 ..      23      67 ..      20      71 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 9.3e-07
    TIGR00714  6 kaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkR 53
                 + ++k y+kl +++HPD  k+  +  +a  +  ++ +Ay TL d  kR
  MMETSP1061-20121228|27382_1 23 SEIKKAYKKLAVKWHPD--KNPGD-EQATTNFQKISEAYATLSDDKKR 67
                 67899************..55444.67788888999*******98887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1588.42
//
Query:       MMETSP1061-20121228|27424_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 410.63
//
Query:       MMETSP1061-20121228|27417_1  [L=893]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-85  284.6   0.9    5.7e-85  284.1   0.6    1.1  1  TIGR02412 pepN_strep_liv: aminopeptidase N
    1.3e-46  157.1   0.0    1.6e-46  156.7   0.0    1.1  1  TIGR02414 pepN_proteo: aminopeptidase N
    1.9e-26   90.7   0.2    4.3e-26   89.6   0.1    1.5  1  TIGR02411 leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase


Domain annotation for each model (and alignments):
>> TIGR02412  pepN_strep_liv: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.1   0.6   4.2e-88   5.7e-85     111     537 ..     134     581 ..     105     600 .. 0.85

  Alignments for each domain:
  == domain 1    score: 284.1 bits;  conditional E-value: 4.2e-88
    TIGR02412 111 vDPvD.gevYlytqfevadarrvfavFdqPDlKAsfelsvkaPedWtVisnsteee.vtteeadrvwefeetPklstYltavaaGPyvsvq.keaesiplgiyaRkSlaeyldadaifditrqgldfyeekFgipyPfkkYDqvfvPefnaGAmENaGlVtfaee..fvfraevtdaeketrakvilHElAHmWFGdlVtmrWWddlWLnEsFAeymgalasaeateytdaWttfavqrKawaYeaDqlpttHPivadvadledalsnfDgitYaKGASvLkqLvayvGeeaFlagvnayfkryafgnatLdDlidsLakasgrdlsaWskaWLetaGvdvlkaele.vdddkvs............alsvessgedRphriavglydldr..de..l..rrtarvelevsgertavkelvgkkaPalvllNddDltyakvrldeksldtv 537
                   D  D +++ + tqfe+ darr f + d P  KA+f +++ +P d +  sn  e++ +t + ++    f etPk+stYl+a   G +  vq   ++++ +++ya +  +     +  +d   ++ld ++e Fgi yP  k D v +Pef aGAmEN GlVt+++    +   ++ +++k++   v+ HElAH+WFG+lVtm WWddlWLnE FA++++  as +     + W +f ++  + a   D   ++HPi++++a+ e++ + fD+i+Y KG Sv++ + a +G +aF++g+ +y+ ++a+gn++  Dl ++ ++as   + +  ++W e  G   +k   e  +ddkv+            +  +  +g+d+  +i +   + ++  ++  l  ++ta++++ ++++ + vk  +g++ P  v   d+ +t  +  + +k+l+  
  MMETSP1061-20121228|27417_1 134 KDTDDnDKIVASTQFEALDARRAFPCVDEPSAKATFLVTLVVPADLECFSNMPESKrKTLAGNKVEVSFLETPKMSTYLLAYCIGEFDYVQgMTENGVLIKVYAPRGRSA--SCQFALDCGCKALDVFDEFFGITYPLPKLDMVAIPEFAAGAMENWGLVTYRDVdlLIDPETASNSQKQRVCSVVSHELAHQWFGNLVTMAWWDDLWLNEGFASWAQDYASDKIYPEYQVWDQFCTDALQSALVMDGMLSSHPIQVPIAHAEEVEQVFDAISYYKGGSVVRMIKAVLGMDAFRKGLGNYMVKHAYGNTETIDLWKAWEDASSMPVPEMMASWTEQMGFPLVKVIAEdWQDDKVVltleqswfltdgSEPPG-DGKDKLWTIPIISCTSEGtqEDmvLmrEKTATITIPLKSNTDWVKLNAGQEVPMRVHYSDEMMTRLTKAIADKALSSP 581
                  455552467789***************************************97765366777788899***********************878899*******887554..567899*********************************************97534445566788999999******************************************9999*************************************************************************************************************8766643321344444447999999888555555.899899999887777666444422322456677777788888999999999999999998888776666666666655 PP

>> TIGR02414  pepN_proteo: aminopeptidase N
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  156.7   0.0   1.2e-49   1.6e-46      83     524 ..     108     556 ..      42     641 .. 0.78

  Alignments for each domain:
  == domain 1    score: 156.7 bits;  conditional E-value: 1.2e-49
    TIGR02414  83 kftleieteikPeentsLeGLYks.......gg..lfctqCEaeGFRrityflDRPdvlskytvtieAdkkkypvlLsnGnkieseeledgrhlaeweDPfkkPsYLFAlvAGdlkvledkfitksgrevalevyveekkedkaefalesLkkamkwDEevfglEyDLdifmivAvddFnmGAmEnkgLniFnsklvLAdpetatDadyeriesviaHEYFHnwtGnRvtcRDWFqlslkEGltvfRdqefsadmtsravkRied..vkllravqFaEDagplaHPvr.P.esyveinnfytatvYekGaEviRmlktllGeeafrkgmdlYfkrhD.Gqavtvedfvaaledasgkdl.eqfkrWysqaGtPelevkeeydaekkeytltlkqstpptp.....gqkekkplhiPlavglldaegkklelslegeareteevlelkeaeetfvfegikekp 524
                  +  +++++      n+++ G Y+s       ++  + +tq Ea   Rr    +D P   +++ vt+    +      sn  + + ++l +++  +++ +  k  +YL A   G+++ ++     ++   v ++vy+ ++++  ++fal++  ka+   +e fg  y L ++ +vA+ +F  GAmEn gL  + +  +L dpeta + + +r+ sv++HE  H w Gn vt+  W  l l EG+  +  q++++d+     +  ++   ++l++     D    +HP++ P ++ +e++  + a  Y kG  v+Rm+k++lG +afrkg+  Y+ +h  G++ t+ d+ +a edas   + e  + W +q G P ++v  e d +++++ ltl+qs   t+     g+ + k  +iP+      +eg+++ + l +e ++++ ++ lk++++ ++++  +e p
  MMETSP1061-20121228|27417_1 108 SSKITLNIDFAGCLNNQMAGFYRShykdtddNDkiVASTQFEALDARRAFPCVDEPSAKATFLVTLVVPAD--LECFSNMPESKRKTLAGNKVEVSFLETPKMSTYLLAYCIGEFDYVQG----MTENGVLIKVYAPRGRSASCQFALDCGCKALDVFDEFFGITYPLPKLDMVAIPEFAAGAMENWGLVTYRDVDLLIDPETASNSQKQRVCSVVSHELAHQWFGNLVTMAWWDDLWLNEGFASWA-QDYASDKIYPEYQVWDQfcTDALQS-ALVMDGMLSSHPIQvPiAHAEEVEQVFDAISYYKGGSVVRMIKAVLGMDAFRKGLGNYMVKHAyGNTETI-DLWKAWEDASSMPVpEMMASWTEQMGFPLVKVIAE-DWQDDKVVLTLEQSWFLTDgseppGDGKDKLWTIPIISCT--SEGTQEDMVLMRE-KTATITIPLKSNTDWVKLNAGQEVP 556
                  355666666677789999999998333333212224679***********************999776533..33579*******************9999999***********88875....56677***************************9999************************************************************************************996.6677777666555555511456655.57789999*****854467889************************************999863777777.6899******9996266789**********98654.5555688999999976665222335555666678875443..3333333333333.3345556666666666666555555 PP

>> TIGR02411  leuko_A4_hydro: leukotriene A-4 hydrolase/aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.6   0.1   3.1e-29   4.3e-26      47     413 ..      60     445 ..      17     453 .. 0.73

  Alignments for each domain:
  == domain 1    score: 89.6 bits;  conditional E-value: 3.1e-29
    TIGR02411  47 lvLdtsyleikevtinglkadfei...eerkealGsklkislpsetsknkelelkieyettdkctaLqflep..eqtkGkkaPylfsqcqaiharsllPcfdtPsvkstydakvesp..lavllsglrke...t.skdegkylfkqkvPiPayLvalasGdLas....apiGprssvysekvelekcqyefekdtekflkvaeelifpyvWkkydllvlppsfPyGGmenPn.ltfatPtLi........agdrsnvdviahelahsWsGnLvtnkswehfWLneGftvylerkivGaleGekerhfsaligwneLqesvkt..lkkdpeytkLvvdLkdndPddafssvPyekGsnlLfyleqllGGkaefdpflkaylkkfayksldtkqf 413
                  + L  ++l  + ++    ++   +   e r + +  +++   p++++k+ +++l+i++    +     f ++  ++t+ +++    +q +a+ ar  +Pc d Ps k t+ +++ +p  l + +s +++    t + ++ ++ f     + +yL+a  +G+++     ++ G   +vy+ + +  +cq+ ++   + +    e + + y   k d++ + p f  G men   +t+    L+        ++ +    v++helah W GnLvt   w+ +WLneGf+ + +     +++ e +   +      +Lq ++ +  +   +     +   + ++ ++ f ++ y kG ++++++  +lG  + f   l +y+ k+ay   +t + 
  MMETSP1061-20121228|27417_1  60 ITLHSKELLYRSAEFLTVDSGTIVkadEIRVNLKETTVTFVFPESIPKSSKITLNIDFAGCLNNQMAGFYRShyKDTDDNDKIVASTQFEALDARRAFPCVDEPSAKATFLVTLVVPadLEC-FSNMPESkrkTlAGNKVEVSFLETPKMSTYLLAYCIGEFDYvqgmTENGVLIKVYAPRGRSASCQFALDCGCKALDVFDEFFGITYPLPKLDMVAI-PEFAAGAMENWGlVTYRDVDLLidpetasnSQKQRVCSVVSHELAHQWFGNLVTMAWWDDLWLNEGFASWAQDYASDKIYPEYQVWDQFC--TDALQSALVMdgMLSSHPIQVPI--AHAEEVEQVFDAISYYKGGSVVRMIKAVLG-MDAFRKGLGNYMVKHAYGNTETIDL 445
                  666666655555544444433222111336677788899999****************99876666556554126788888778888***********************998888753544.5666554222345566777888888899**********986211245677789****************7777666666667899*******8765.57********8625876655542333322122334468************************************9999999877644433..35566554331133333333333..33447899*********************9.999**************99999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 2806.34
//
Query:       MMETSP1061-20121228|27421_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 1341.18
//
Query:       MMETSP1061-20121228|27425_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 2032.63
//
Query:       MMETSP1061-20121228|27439_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 316.77
//
Query:       MMETSP1061-20121228|27437_1  [L=425]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (425 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1809.53
//
Query:       MMETSP1061-20121228|27429_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.3e-193  638.7   2.1   7.4e-193  638.5   1.5    1.0  1  TIGR02028 ChlP: geranylgeranyl reductase
   6.9e-149  493.9   0.9   7.9e-149  493.7   0.6    1.0  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      1e-51  174.3   2.2    1.5e-51  173.7   1.5    1.2  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    6.9e-10   36.1   0.2    0.00075   16.2   0.0    3.1  3  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    2.5e-07   26.4   0.0    3.5e-07   25.8   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    7.4e-07   26.3   0.1     0.0063   13.3   0.0    2.4  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    1.9e-06   24.8   0.1       0.21    8.1   0.0    3.1  3  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    3.3e-06   24.0   0.0    0.00046   16.9   0.0    2.4  2  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
    8.3e-05   19.1   0.1    0.00015   18.3   0.0    1.3  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
    0.00019   17.8   0.0    0.00027   17.3   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    0.00029   18.0   0.2    0.00085   16.4   0.0    1.8  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00054   16.7   0.0    0.00095   15.9   0.0    1.3  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    0.00079   15.9   0.1     0.0019   14.7   0.0    1.6  2  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    0.00089   16.0   0.0     0.0016   15.2   0.0    1.3  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0009   16.0   1.2     0.0013   15.4   0.1    1.8  2  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
       0.01   12.3   0.0      0.015   11.7   0.0    1.2  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
  ------ inclusion threshold ------
      0.013   12.1   0.1       0.02   11.5   0.1    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family


Domain annotation for each model (and alignments):
>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  638.5   1.5  3.1e-195  7.4e-193       2     397 ..      44     444 ..      43     445 .. 0.98

  Alignments for each domain:
  == domain 1    score: 638.5 bits;  conditional E-value: 3.1e-195
    TIGR02028   2 rvavvgggpagasaaetlak.agiqtfllerkldnakpcggaiplcmvdefdlprdiidrrvtkmkvispsniavdigrtlkeheyigmvrrevldsflreraadagatlinglvlklelped...addpytlhyveedktgasgtkktlevdavigadgansrvakeidagdydyaiafqerirlpdekmayyedlaemyvgddvspdfygwvfpkcdhvavgtgtvaakdeikklqagiraraaakvaggkiirveahpipehprprrvvgrvalvgdaagyvtkssgegiyfaaksgrlcaeaiveesrlgkkvie.egdlkkylkrwdkeyrptyrvldllqrvfyrsnaarealvemcadedvqkltfdsylykrvapaepledlkllvktigslv 397
                  +vav+gggp+ga+aae +a+  gi+t+++erk+dnakpcggaiplcmv+efd+p+ ++dr+v++m+++sp+  +v ig tl+++eyigm+rre++d +lr+ra + ga+ inglv+k++ p+d   +++ ytl+y +++++ +sgt++ ++vd+vigadgansrvak +dag+y++aiafqeri++pd+km +ye++aemyvgddvspdfygwvfpk+dhv vgtgtv++++ ik++q +ir+ra +k+aggkii+veahpipeh rprrv gr+alvgdaagyvtk+sgegiyfaaksgr+ ae iv+ +++gk++++ e + k+ylk++dk+y+pty vld+lq+vfy +n area+ve+c+ ++vq++tfdsylykrv   +pl+dlkll +tig+l+
  MMETSP1061-20121228|27429_1  44 KVAVIGGGPSGACAAEIFAQeKGIDTVMFERKMDNAKPCGGAIPLCMVGEFDIPETVVDRKVRRMNLVSPTGAEVSIGDTLQPDEYIGMCRREIMDKYLRDRAIEYGAEPINGLVTKINVPADhktSESQYTLYYQKYEEGKSSGTACEMKVDMVIGADGANSRVAKAMDAGEYNFAIAFQERIKIPDDKMVFYEEMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKQYQKAIRDRAGDKIAGGKIIKVEAHPIPEHYRPRRVQGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVKLMDGGKRLPTqEEIEKTYLKKYDKAYGPTYAVLDILQKVFYSNNGAREAFVELCDSKYVQQVTFDSYLYKRVQGNNPLDDLKLLGETIGCLI 444
                  79****************9846***************************************************************************************************986557889*******************************************************************************************************************************************************************************************762678899************************************************************************998 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  493.7   0.6  3.3e-151  7.9e-149       1     388 []      43     445 ..      43     445 .. 0.96

  Alignments for each domain:
  == domain 1    score: 493.7 bits;  conditional E-value: 3.3e-151
    TIGR02023   1 ydvlviGggpsGaaaaetLak.agievillerelarikPCGGaiPlalieefdlPedlidrrvrkakvisPs..aveikvdlpveeeyvgmvrrevfDeyLreraqkaGaeliegllkklerded......kltleyrek.ekeageekksveadvviGaDGakskvakelglgknlkkvialqeriklpdeklkyyeeladvyldgevsPDfYgWvfPkgdhiavGvGtethktdikkllaalrrkag..laggktirreaapiPlkPrkrldservvLvGDaaGlvakasGeGiyyamksGklaaeaivealksg.....datdLrkyekkfmklyktvfrvLrvlqkvyYrsdkrrekfvelCrdkdvqkltfdsYlykklvpasklaqlklalkniaslvr 388
                  y+v+viGggpsGa aae+ a+ +gi+++++er+++++kPCGGaiPl++++efd+Pe ++dr+vr+++++sP+  +v+i  +l+  +ey+gm rre +D+yLr+ra + Gae i+gl++k++++ d      ++tl y+++ e +++++   +++d+viGaDGa+s+vak++++g +++ +ia+qerik+pd+k+  yee+a++y++++vsPDfYgWvfPk dh+ vG+Gt+ ++ +ik+ ++a+r++ag  +aggk+i++ea+piP++ r+r+ ++r++LvGDaaG+v+k+sGeGiy+a+ksG++aae iv+ ++ g     +++  ++y kk++k y++++ vL++lqkv+Y ++ +re+fvelC  k+vq++tfdsYlyk++  +++l +lkl  ++i+ l++
  MMETSP1061-20121228|27429_1  43 YKVAVIGGGPSGACAAEIFAQeKGIDTVMFERKMDNAKPCGGAIPLCMVGEFDIPETVVDRKVRRMNLVSPTgaEVSIGDTLQ-PDEYIGMCRREIMDKYLRDRAIEYGAEPINGLVTKINVPADhktsesQYTLYYQKYeEGKSSGTACEMKVDMVIGADGANSRVAKAMDAG-EYNFAIAFQERIKIPDDKMVFYEEMAEMYVGDDVSPDFYGWVFPKYDHVGVGTGTVVNRPAIKQYQKAIRDRAGdkIAGGKIIKVEAHPIPEHYRPRRVQGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVKLMDGGkrlptQEEIEKTYLKKYDKAYGPTYAVLDILQKVFYSNNGAREAFVELCDSKYVQQVTFDSYLYKRVQGNNPLDDLKLLGETIGCLIK 445
                  79*****************97469************************************************76677888888.99**********************************9887766667789999999945567889999***********************.9*************************************************************************99****************************************************************88988877777789***********************************************************************98875 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.7   1.5   6.2e-54   1.5e-51       3     297 .]      45     350 ..      43     350 .. 0.87

  Alignments for each domain:
  == domain 1    score: 173.7 bits;  conditional E-value: 6.2e-54
    TIGR02032   3 vvvvGaGpaGssaAlrla.kkGlrVlllekkelprekeCggalskraveelelpkelivnevrkariispngekveieee...eeealvidRkefDelLaekAqeagaelllettvlsveied.............ekvkvevredekkevtakivigAdGakskvakklglkkekrelavalraeveeeveeevdedsvevyidkglvpggYgWvfPkgdgtanvGvgvlseekedlkkklkeflaerpeklkdaeevevkgaliPirradektvtgnvllvGDAAglVkPltGeGIayamvagklAaevv 297
                  v v+G+Gp+G+ aA+  a +kG++++++e+k +  +k+Cgga++   v e+++p+  +  +vr  +++sp+g +v i      +e+  + +R+ +D++L ++A e gae   +  ++     d             ++++ + + ++  e++ ++vigAdGa+s+vak+++  + +  +a++ r++++ + ++   e+ +e+y++++++p++YgWvfPk d+ + vG+g+   +   +k++ k+  ++ ++k+   ++++v++++iP   ++ ++v+g++ lvGDAAg V   +GeGI++a+++g++Aae +
  MMETSP1061-20121228|27429_1  45 VAVIGGGPSGACAAEIFAqEKGIDTVMFERK-MDNAKPCGGAIPLCMVGEFDIPETVVDRKVRRMNLVSPTGAEVSIGDTlqpDEYIGMCRREIMDKYLRDRAIEYGAEPINGLVTKINVPADhktsesqytlyyqKYEEGKSS-GTACEMKVDMVIGADGANSRVAKAMDAGEYNFAIAFQERIKIPDD-KMVFYEEMAEMYVGDDVSPDFYGWVFPKYDH-VGVGTGTV-VNRPAIKQYQKAIRDRAGDKIAGGKIIKVEAHPIPEH-YRPRRVQGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEI 350
                  88************9866269*********9.7778*******************99999999*********999988878889*************************77666555544444678898888865333333322.378899********************9977777777788888887.6778899***********************8.77777777.68889999999999999999999************87.899999999******************************986 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.1    0.0019      0.46       2      34 ..      45      77 ..      44      86 .. 0.88
   2 !    9.2   0.0   0.00042       0.1     151     173 ..     192     214 ..     147     222 .. 0.76
   3 !   16.2   0.0   3.1e-06   0.00075     262     357 ..     300     396 ..     276     402 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0019
    TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveakaa 34
                 ++++GgG+ G+  A  +a+++++++ ++e+k  
  MMETSP1061-20121228|27429_1 45 VAVIGGGPSGACAAEIFAQEKGIDTVMFERKMD 77
                 89****************999***999998754 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00042
    TIGR01988 151 tleakLlvgADGanSkvrqaagi 173
                  +++ ++++gADGanS v++a+  
  MMETSP1061-20121228|27429_1 192 EMKVDMVIGADGANSRVAKAMDA 214
                  388899*************9975 PP

  == domain 3    score: 16.2 bits;  conditional E-value: 3.1e-06
    TIGR01988 262 raafPLslthakryvaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavL.krYererradnaallaatdllnrlfsndf 357
                   +a P+  ++  r v+ r+al+GdAA  v    G G+ +  +  +  ae +++ +  g+ + + + + k Y ++  ++  +++a++d+l+++f +++
  MMETSP1061-20121228|27429_1 300 VEAHPIPEHYRPRRVQGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVKLMDGGKRLPTQEEIeKTYLKKYDKAYGPTYAVLDILQKVFYSNN 396
                  56789999999******************************************9999999987766625699999999**************98776 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.5e-09   3.5e-07     533     607 ..      38     121 ..      23     139 .. 0.74

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 1.5e-09
    TIGR03315 533 lksekhkvaviGaGPaGlsagyfla.raGlpvtvfekkeka....gGvvk.niiPefrisaeviqkdl...elvkkkGvefklG 607
                    + + kvaviG+GP+G +a+ ++a  +G++  +fe+k +     gG +   ++ ef i++ v+++ +   +lv  +G+e+ +G
  MMETSP1061-20121228|27429_1  38 NMDMRYKVAVIGGGPSGACAAEIFAqEKGIDTVMFERKMDNakpcGGAIPlCMVGEFDIPETVVDRKVrrmNLVSPTGAEVSIG 121
                  344567***********98876555168********9864312236776525789*********976433389*******9998 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       3.4   8.2e+02       2      16 ..      44      58 ..      43      65 .. 0.77
   2 !   10.5   0.0   0.00018     0.044     168     190 ..     191     213 ..     136     222 .. 0.78
   3 !   13.3   0.0   2.6e-05    0.0063     331     413 ..     314     397 ..     301     403 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 3.4
    TIGR01989  2 DvvivGgGlvGlalA 16
                  v++ GgG+ G+  A
  MMETSP1061-20121228|27429_1 44 KVAVIGGGPSGACAA 58
                 6899*******7655 PP

  == domain 2    score: 10.5 bits;  conditional E-value: 0.00018
    TIGR01989 168 etlktklliGADGanSkvRkaan 190
                   ++k++++iGADGanS v ka++
  MMETSP1061-20121228|27429_1 191 CEMKVDMVIGADGANSRVAKAMD 213
                  578999************99986 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 2.6e-05
    TIGR01989 331 vtervALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGadlGsvssLkk.yererkakNvallalvdklkklYstdfp 413
                  v+ r+ALvGDAA  v    G G+    +  ++ ++ + + +  G+ l     ++k y ++  ++  +  a++d l+k++  +++
  MMETSP1061-20121228|27429_1 314 VQGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVKLMDGGKRLPTQEEIEKtYLKKYDKAYGPTYAVLDILQKVFYSNNG 397
                  889********************************************99998865388888889999**********9887776 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0034      0.82       1      35 [.      44      78 ..      44      84 .. 0.88
   2 !    6.9   0.0    0.0022      0.52     148     172 ..     192     216 ..     160     232 .. 0.82
   3 !    8.1   0.0   0.00088      0.21     239     296 ..     280     336 ..     272     396 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0034
    TIGR01984  1 dviivGgglvGlslAlaLsrksklkialieaksae 35
                 +v+++Ggg++G+  A  ++++  +++ ++e k  +
  MMETSP1061-20121228|27429_1 44 KVAVIGGGPSGACAAEIFAQEKGIDTVMFERKMDN 78
                 599***************99999*******98655 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0022
    TIGR01984 148 kleakLlvaAdGanskvreslsiae 172
                  +++ ++++ AdGans+v++++ + e
  MMETSP1061-20121228|27429_1 192 EMKVDMVIGADGANSRVAKAMDAGE 216
                  67899**************998765 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00088
    TIGR01984 239 flaeLqkafgerl..GkitqvgerkaypLklviaeeqvkervvlignaAqtlhPiAgQGf 296
                  + +++++++g ++  Gki +v   +a+p+  +++ + v+ r++l+g+aA  +   +g G+
  MMETSP1061-20121228|27429_1 280 YQKAIRDRAGDKIagGKIIKV---EAHPIPEHYRPRRVQGRMALVGDAAGYVTKCSGEGI 336
                  455566666665544555555...589**********************98888888776 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   1.9e-06   0.00046       1      36 [.      41      77 ..      41     120 .. 0.91
   2 ?    4.6   0.0      0.01       2.5     247     316 ..     284     353 ..     277     414 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 1.9e-06
    TIGR02360  1 mktqvaiigaGpsGlllgqll.hkaGidavilerksr 36
                 m+ +va+ig+GpsG   +++  +++Gid+v++erk  
  MMETSP1061-20121228|27429_1 41 MRYKVAVIGGGPSGACAAEIFaQEKGIDTVMFERKMD 77
                 899*************999872568*********965 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.01
    TIGR02360 247 ldeeaaeklvtgpsieksiaplrsfvaepmryGrlflaGdaahivpptGakGlnlaasdvaylyeallea 316
                  + ++a +k+  g  i+    p++         Gr+ l+Gdaa  v      G+  aa    +  e +++ 
  MMETSP1061-20121228|27429_1 284 IRDRAGDKIAGGKIIKVEAHPIPEHYRPRRVQGRMALVGDAAGYVTKCSGEGIYFAAKSGRMAAEEIVKL 353
                  66667777777777777777888777666668*****************9***99998777766666655 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0     6e-07   0.00015     205     244 ..      35      75 ..      23      80 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 6e-07
    TIGR03140 205 eaeeekekydvlvvGgGPagaaaa.iyaarkGlkvalvaer 244
                  + ++   +y v v+GgGP+ga+aa i+a  kG+ + +   +
  MMETSP1061-20121228|27429_1  35 NGSNMDMRYKVAVIGGGPSGACAAeIFAQEKGIDTVMFERK 75 
                  44455668************97766**********997665 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   1.1e-06   0.00027     376     451 ..      39     121 ..      22     131 .. 0.65

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 1.1e-06
    TIGR03997 376 arrrkkvlvvGgGPaGleaaat.aarrGhrvtllere....eelGGqvklaaklpgreelaelvrdlase...lkelgvevklG 451
                    +r kv v+GgGP+G  aa+  a ++G + +++er+    +  GG++ l++     +  +++v+ ++++   ++ +g ev++G
  MMETSP1061-20121228|27429_1  39 MDMRYKVAVIGGGPSGACAAEIfAQEKGIDTVMFERKmdnaKPCGGAIPLCMVG-EFDIPETVVDRKVRRmnlVSPTGAEVSIG 121
                  456789***********9998626679********9722224469999988865.33333455555444411133455555555 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   3.5e-06   0.00085      20      55 ..      41      77 ..      25     107 .. 0.83
   2 ?   -1.9   0.0       1.4   3.3e+02     180     250 ..     305     351 ..     272     355 .. 0.48

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 3.5e-06
    TIGR00292 20 aesDviivGaGpsGLtaayylakeg.lkvvvlerkla 55
                 +   v+++G+GpsG  aa ++a+e+ + +v++erk+ 
  MMETSP1061-20121228|27429_1 41 MRYKVAVIGGGPSGACAAEIFAQEKgIDTVMFERKMD 77
                 55679*****************8766********985 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.4
    TIGR00292 180 ikleadvqklgGekslyaekaeaallentrevvdnlyvaGmavaavdglnrmGpifGgmllsGkkvaelil 250
                  i++     +++G                       + + G a+  v      G  f +   sG+ +ae i+
  MMETSP1061-20121228|27429_1 305 IPEHYRPRRVQG----------------------RMALVGDAAGYVTKCSGEGIYFAA--KSGRMAAEEIV 351
                  333333333333......................333444444444444444444433..35666666555 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     4e-06   0.00095     144     224 ..      43     128 ..      35     133 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4e-06
    TIGR01317 144 kkvavvGsGPaGlaaadqlnr.aGhtvtvfere.dr...vGGllryG.iPnlkldkeiverridlleaeGvdfvtnveiGkdisaee 224
                   kvav+G GP+G  aa+ +++  G +  +fer+ d    +GG +    + ++ +  ++v+r++  ++    +  ++v iG +++++e
  MMETSP1061-20121228|27429_1  43 YKVAVIGGGPSGACAAEIFAQeKGIDTVMFERKmDNakpCGGAIPLCmVGEFDIPETVVDRKVRRMNLVSPT-GAEVSIGDTLQPDE 128
                  69***************9987358888889996333333899876542678888888888877777654332.34566777776665 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   7.9e-06    0.0019     141     194 ..      42     101 ..      34     129 .. 0.67
   2 ?   -3.9   0.0       3.5   8.4e+02     450     465 ..     339     354 ..     333     355 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 7.9e-06
    TIGR01318 141 gkrvaviGaGpaGlacadvlar.aGvkvvvfdrype....iGGlltfG.ipsfkldkavl 194
                    +vaviG+Gp+G + a+++a+  G+++v+f+r  +     GG + +  +  f +  +v+
  MMETSP1061-20121228|27429_1  42 RYKVAVIGGGPSGACAAEIFAQeKGIDTVMFERKMDnakpCGGAIPLCmVGEFDIPETVV 101
                  579**********99999998637*******99754222256655432133444444444 PP

  == domain 2    score: -3.9 bits;  conditional E-value: 3.5
    TIGR01318 450 avaeGrkaaegildyl 465
                  a + Gr aae+i++++
  MMETSP1061-20121228|27429_1 339 AAKSGRMAAEEIVKLM 354
                  6789********9987 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   6.5e-06    0.0016     132     195 ..      41     110 ..      25     125 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 6.5e-06
    TIGR01316 132 tkkkvaviGaGpaGlavaselak.kGhevtvfeal...hkp.GGvl.ayGipefrlpkeivetevkklkk 195
                   + kvaviG Gp+G + a+  a+ kG +  +fe      kp GG +    + ef +p  +v+ +v++++ 
  MMETSP1061-20121228|27429_1  41 MRYKVAVIGGGPSGACAAEIFAQeKGIDTVMFERKmdnAKPcGGAIpLCMVGEFDIPETVVDRKVRRMNL 110
                  568***********7777766753899999**96422257745555145689************999875 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.1   5.3e-06    0.0013       1      35 [.      43      78 ..      43      86 .. 0.89
   2 ?   -2.6   0.1       1.6   3.9e+02     270     298 ..     324     352 ..     324     354 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 5.3e-06
    TIGR01292  1 ydviiiGaGpaGltaa.iYaaranlktlliegkeag 35
                 y+v++iG+Gp+G  aa i+a+ ++++t+++e+k+ +
  MMETSP1061-20121228|27429_1 43 YKVAVIGGGPSGACAAeIFAQEKGIDTVMFERKMDN 78
                 699*********98776**************98766 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 1.6
    TIGR01292 270 aaGDvrdkslrQvvtaagdGaiAalsvek 298
                  aaG v++ s + +  aa +G +Aa ++ k
  MMETSP1061-20121228|27429_1 324 AAGYVTKCSGEGIYFAAKSGRMAAEEIVK 352
                  789999999999999********999876 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   6.2e-05     0.015       2      36 ..      42      75 ..      41      89 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 6.2e-05
    TIGR00562  2 kkkvvvvGgGisGLciayalekerpdvelvlvEak 36
                 + kv+v+GgG sG c+a  +++e ++++ v++E k
  MMETSP1061-20121228|27429_1 42 RYKVAVIGGGPSGACAAEIFAQE-KGIDTVMFERK 75
                 569******************99.9*******976 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.1   8.4e-05      0.02       1      31 [.      45      76 ..      45      81 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 8.4e-05
    TIGR00275  1 viiiGgGaaGlmaAitaae.egakVlllEknk 31
                 v++iGgG++G  aA   a+ +g + +++E++ 
  MMETSP1061-20121228|27429_1 45 VAVIGGGPSGACAAEIFAQeKGIDTVMFERKM 76
                 79************776665999999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        17  (0.00414432); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              17  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1537.67
//
Query:       MMETSP1061-20121228|27459_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       331  (0.0806923); expected 82.0 (0.02)
Passed bias filter:                      225  (0.0548513); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 386.54
//
Query:       MMETSP1061-20121228|27463_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.39
# Mc/sec: 1306.35
//
Query:       MMETSP1061-20121228|27472_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 499.26
//
Query:       MMETSP1061-20121228|27475_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-28   96.4   0.0    2.3e-28   95.9   0.0    1.2  1  TIGR00008 infA: translation initiation factor IF-1


Domain annotation for each model (and alignments):
>> TIGR00008  infA: translation initiation factor IF-1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.9   0.0   5.5e-32   2.3e-28       1      69 []      79     151 ..      79     151 .. 0.94

  Alignments for each domain:
  == domain 1    score: 95.9 bits;  conditional E-value: 5.5e-32
    TIGR00008   1 kedkieleGkvveslpnamfrveleN....gvevlahisGkirknyiriLpgDkVkvelspYdltkGRIiyRl 69 
                  k+d+ie++G v+eslpnamfr  +eN    ++ vla+isGkirkn+++iL gD+V +elspYdlt+GRI++R+
  MMETSP1061-20121228|27475_1  79 KDDVIEVDGVVLESLPNAMFRCAIENapetQEPVLATISGKIRKNFVKILVGDRVLMELSPYDLTRGRITFRY 151
                  89************************4444467***************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 716.51
//
Query:       MMETSP1061-20121228|27492_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 472.38
//
Query:       MMETSP1061-20121228|27506_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 597.42
//
Query:       MMETSP1061-20121228|27517_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    9.4   4.6        0.4    8.7   3.0    1.7  1  TIGR02413 Bac_small_yrzI: Bacillus tandem small hypothetical protein
        2.3    4.4   8.4        2.2    4.5   5.8    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR02413  Bac_small_yrzI: Bacillus tandem small hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.0    0.0002       0.4      11      29 ..       5      23 ..       3      42 .. 0.91

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.0002
    TIGR02413 11 TiqKrklseaElereqqie 29
                 T + r++se+E+++e +++
  MMETSP1061-20121228|27517_1  5 TSKQRTKSEDEIKKETRDN 23
                 7799***********9986 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   5.8    0.0011       2.2      19      66 ..       3      50 ..       1      57 [] 0.77

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0011
    TIGR01642 19 kskeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissl 66
                 ++  ++R +s d+ ++  Rd ++r+    k ++ R+r+  d++   s 
  MMETSP1061-20121228|27517_1  3 RTTSKQRTKSEDEIKKETRDNWKRKMKIAKAKKRRERQALDDYTVGSS 50
                 456678888889999999999999999999999999999999886554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                      151  (0.0368113); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|27518_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1913.84
//
Query:       MMETSP1061-20121228|27570_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 637.95
//
Query:       MMETSP1061-20121228|27576_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.13s 00:00:00.72 Elapsed: 00:00:00.42
# Mc/sec: 1781.85
//
Query:       MMETSP1061-20121228|27597_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 486.28
//
Query:       MMETSP1061-20121228|27583_1  [L=981]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (981 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       442  (0.107752); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.77u 0.14s 00:00:00.91 Elapsed: 00:00:00.77
# Mc/sec: 1681.58
//
Query:       MMETSP1061-20121228|27586_1  [L=692]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (692 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 2767.77
//
Query:       MMETSP1061-20121228|27609_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 596.59
//
Query:       MMETSP1061-20121228|27622_1  [L=1096]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-77  259.3   0.1    6.5e-42  141.7   0.0    3.8  5  TIGR00593 pola: DNA polymerase I
     0.0083   12.3   0.6      0.015   11.4   0.4    1.4  1  TIGR00578 ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)


Domain annotation for each model (and alignments):
>> TIGR00593  pola: DNA polymerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.26   5.4e+02     369     419 ..     296     345 ..     289     349 .. 0.86
   2 !   12.3   0.0   4.1e-06    0.0084     455     554 ..     405     519 ..     397     537 .. 0.73
   3 ?   -2.4   0.2      0.11   2.3e+02     502     519 ..     562     579 ..     542     723 .. 0.51
   4 !  100.1   0.0   1.2e-32   2.4e-29     605     712 ..     787     892 ..     776     895 .. 0.92
   5 !  141.7   0.0   3.2e-45   6.5e-42     714     879 ..     918    1088 ..     913    1096 .] 0.92

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.26
    TIGR00593 369 klaevleketikkaleadakalaklLkakgielllvvedtmlaaylldpee 419
                  +++ ++e+e  kk+  +++ ++++++ ++gi+ ++   dtm +a l d+++
  MMETSP1061-20121228|27622_1 296 EFKPWMEDERFKKIW-HNYGFDRHVMWNEGIDCKGFGGDTMHMARLQDTSR 345
                  567788889888888.*************************9999888776 PP

  == domain 2    score: 12.3 bits;  conditional E-value: 4.1e-06
    TIGR00593 455 eealeelaakaaalarlaeelekele.......eeelkslleeielPlskvLaeMEktGikvd.kdylqelskel....aeelakleeeiyelaGee...fnlnSpkQLeevLFe 554
                  e+ ++++  +a  ++rl+++l + l+         +l + +    + + +vL++ME +G++vd kdyl  ++k++    +++l+k  + +   +G +   +n  S  QL ++LF 
  MMETSP1061-20121228|27622_1 405 ENFIAYSCYDAVGTWRLHQRLVQLLKkmdwiskDTNLYDYYWANMRGFGEVLTDMERRGVRVDaKDYLASVEKQArqdrEDHLNKFRQWVATEIGPDglaINPASSLQLCTLLFG 519
                  5566777777888888888887777777775544455555555567899*************94589998887762222567888888888888753322888899999999996 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 0.11
    TIGR00593 502 MEktGikvdkdylqelsk 519
                  ME++G +v++d l +l++
  MMETSP1061-20121228|27622_1 562 MEDEGTAVETDHLDQLTA 579
                  444444444444444332 PP

  == domain 4    score: 100.1 bits;  conditional E-value: 1.2e-32
    TIGR00593 605 ellelvnkdtgriHTtFvQtgtaTGRLsSsnPNLQNiPirseegrkIRkaFvaekgwllisaDYsQIELrvLAHlsqdenLieaFkegeDiHtetAaklfgveeedvt 712
                  + l+ ++++  r+H + +   t TGRLsS+ PNLQN P  +++  kIR+aF+a+ g+ li aDY Q+ELr+LA + + + +i+aF++g D H++tA ++f+  +++v+
  MMETSP1061-20121228|27622_1 787 S-LQSLADHQSRVHCSLN-LNTETGRLSSRRPNLQNQPALEKDKYKIRQAFQASPGNSLIVADYGQLELRLLASMTHCKSMINAFESGGDFHSRTALDMFDHVKQKVD 892
                  3.55566666******87.78********************************************************************************9999887 PP

  == domain 5    score: 141.7 bits;  conditional E-value: 3.2e-45
    TIGR00593  714 eeRriaKtvnFGvvYGisafrLakelkisrkeAkefierYFerypgvkeyleqvveearkkgyvetllgRrryikdiksrnrkereaaeRaAlNapiQgsaADiiKiAMikldkalkerklkarlLLQvHDELlleapeeeaeevkelvkevmeeav.....elkvPLeve 879 
                    eRr+aKt+nF + YG  a++L+++ +++++eA++ ++++++  p+v+e+  ++++ ar+ g + tl+gR+r +++ + rn+   + aeRa++N+piQg aAD+  +AM+k++k+ k ++l   lLLQvHDE++le p e aee  e v + me+       + +vPL v+
  MMETSP1061-20121228|27622_1  918 SERRKAKTLNFSIAYGKTAHGLSQDWGVTQQEAQDMLDKWYDARPEVREWQVNTKAYARRFGLTRTLMGRYRQLPEATGRNKRFLGHAERASINTPIQGGAADVAMMAMVKINKSEKLKRLGWILLLQVHDEVMLEGPDETAEEAFEEVIQCMESPWvlglaKTAVPLLVD 1088
                   68********************************************************************************************************************************************************75411111345888776 PP

>> TIGR00578  ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.4   7.4e-06     0.015     538     585 ..     561     608 ..     546     609 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.4e-06
    TIGR00578 538 seeelreevkkGtlgkltvsvlkdickaeGlrsgskkqelldalkkhl 585
                  + e+  + v+  +l +lt   lk +c++ Gl+ ++kk+ l + l++hl
  MMETSP1061-20121228|27622_1 561 QMEDEGTAVETDHLDQLTAVQLKALCRECGLKVSGKKAVLQQRLREHL 608
                  3345567788899***************************99999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1096 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.49u 0.15s 00:00:00.64 Elapsed: 00:00:00.75
# Mc/sec: 1928.80
//
Query:       MMETSP1061-20121228|27646_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.04u 0.19s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 367.27
//
Query:       MMETSP1061-20121228|27666_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1331.89
//
Query:       MMETSP1061-20121228|27691_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1201.56
//
Query:       MMETSP1061-20121228|27687_1  [L=949]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (949 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.27s 00:00:00.53 Elapsed: 00:00:00.60
# Mc/sec: 2087.63
//
Query:       MMETSP1061-20121228|27711_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1214.30
//
Query:       MMETSP1061-20121228|27727_1  [L=151]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (151 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 996.52
//
Query:       MMETSP1061-20121228|27728_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1368.52
//
Query:       MMETSP1061-20121228|27746_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-28   97.9   0.2    1.5e-28   97.7   0.2    1.0  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase


Domain annotation for each model (and alignments):
>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.2   3.5e-32   1.5e-28     273     374 ..       3     101 ..       1     104 [. 0.94

  Alignments for each domain:
  == domain 1    score: 97.7 bits;  conditional E-value: 3.5e-32
    TIGR00031 273 kfqevavvnfp.ldksitriveykqltqeeskqtivskeyPleykegdnepyyPvnddknkalfkkylelasklenlillGrlaeykyidmdkvilaalkkve 374
                  +fq   vvn+p + +++triveyk+l ++ s+ t++  e     k+g  epyyPv +++nkal+++y ela++++n+ ++Grla+yky++md++i +al+ ++
  MMETSP1061-20121228|27746_1   3 TFQPKFVVNHPsAGTNFTRIVEYKHLLNQTSNDTVLFIERS---KDGG-EPYYPVPNEQNKALYRRYQELATNEPNVTFVGRLANYKYFNMDQAIINALELFD 101
                  69999******88899**********************974...6676.9************************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 729.08
//
Query:       MMETSP1061-20121228|27739_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0029   15.3   3.1     0.0048   14.6   2.1    1.4  1  TIGR03008 pepcterm_CAAX: CAAX prenyl protease-related protein


Domain annotation for each model (and alignments):
>> TIGR03008  pepcterm_CAAX: CAAX prenyl protease-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   2.1   1.2e-06    0.0048     129     204 ..     236     308 ..     172     324 .. 0.74

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.2e-06
    TIGR03008 129 vlEElFwRsfllrllqkkdfesvpvgrlawksflavtilFgleHk....livagllAGlayallllrtgsivacvlaHav 204
                  + EE+ +R+ l+  l          +++++ ++  ++i+Fg  H     + + + lA + + +l++ tg+++ ++ +Ha 
  MMETSP1061-20121228|27739_1 236 LGEEMLFRGVLQFEL-------ASRTTSEIVAVGLSSIIFGALHAvtplYAILAALASVYFGWLYIVTGNLAIPIATHAF 308
                  567888888777666.......44455555555555566666654222267999999*********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1810.89
//
Query:       MMETSP1061-20121228|27754_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-08   32.7   0.1    2.1e-08   31.7   0.1    1.4  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    0.00042   16.6   0.1    0.00059   16.1   0.1    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    0.00055   16.9   0.6    0.00066   16.7   0.4    1.1  1  TIGR00435 cysS: cysteine--tRNA ligase
     0.0037   15.2   0.5     0.0074   14.2   0.2    1.6  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.1   2.1e-11   2.1e-08       3      44 ..      61     102 ..      60     121 .. 0.90

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 2.1e-11
    TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfk 44 
                  +eiLgvsk+A+ +e+k+ + +la k+HPD  ++++++++ +k
  MMETSP1061-20121228|27754_1  61 FEILGVSKSATYAEVKQRFLELALKHHPDHANDSEDSKNNMK 102
                  69******************************9999988887 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.1   5.7e-07   0.00059       5      40 ..      61      96 ..      58     105 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.7e-07
    TIGR03835  5 yevLgidrDadeqeikkafrkLakkyhPDrnkaada 40
                 +e+Lg+++ a   e+k+ f  La k+hPD  ++++ 
  MMETSP1061-20121228|27754_1 61 FEILGVSKSATYAEVKQRFLELALKHHPDHANDSED 96
                 8*****************************999543 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.4   6.5e-07   0.00066     293     432 ..      83     226 ..      59     227 .] 0.78

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.5e-07
    TIGR00435 293 lsvhyrnqldfseelleeak.nalerlakalralkedlasakeiskkksp..lekefeaefvE.aldddlntaealavlselvkksnlkeiskakaallieelialesvlekllglpsksvqagsnddelgeledlieersear 432
                  + +h+ +  + se+  ++ k n++ r+++a ++lkedl+ ++++++k +p  +++ef+a + E + ++dl++   +++  e++ + n++++   +   + e  +++ +  + l++ ++k  ++    d +++ e+++++r++ +
  MMETSP1061-20121228|27754_1  83 ALKHHPDHANDSEDSKNNMKsNDFIRFRQAFERLKEDLDGSTTVEEKGTPlwTDEEFRAWYYEeTGQKDLQFRMDMKTRKEVIDTYNQQAQGGLDRGGMWEMARRMAEEDAFLKENKNKIKRSIGLPDAENHTESTVQRRRRKK 226
                  34555555566666666666699************************999998999*99876527799*******************99999999999*999999999777776555554333333456788899999887765 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.2   7.2e-06    0.0074       8      52 ..      75     121 ..      72     173 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 7.2e-06
    TIGR00714   8 LrkryrklQkqyHPDvsksaqeqaaalqqSt..elNqAykTLkdplk 52 
                  +++r+++l  ++HPD ++   + + +++        qA++ Lk+ l 
  MMETSP1061-20121228|27754_1  75 VKQRFLELALKHHPDHANDSEDSKNNMKSNDfiRFRQAFERLKEDLD 121
                  679************88888887766665441145799999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 1576.92
//
Query:       MMETSP1061-20121228|27760_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       328  (0.079961); expected 82.0 (0.02)
Passed bias filter:                      228  (0.0555826); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 306.21
//
Query:       MMETSP1061-20121228|27779_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 567.55
//
Query:       MMETSP1061-20121228|27780_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.46
# Mc/sec: 1758.90
//
Query:       MMETSP1061-20121228|27851_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|27858_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-11   41.9   3.0    1.5e-11   41.9   2.0    1.0  1  TIGR00841 bass: bile acid transporter


Domain annotation for each model (and alignments):
>> TIGR00841  bass: bile acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   2.0   3.7e-15   1.5e-11      94     143 ..       3      52 ..       1      53 [] 0.94

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 3.7e-15
    TIGR00841  94 spelavgvlivgccPGGtaSnvltyllkGdvalsismTtiStllalgmlP 143
                  sp +  g++++g+  GG+aSn++t++++Gdvals+  T   tll +  +P
  MMETSP1061-20121228|27858_1   3 SPSQTAGIILLGAVGGGQASNLFTLIARGDVALSVICTISTTLLGVFSTP 52 
                  578899*************************************9998888 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|27850_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2067.83
//
Query:       MMETSP1061-20121228|27871_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1261.82
//
Query:       MMETSP1061-20121228|27877_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.09s 00:00:00.32 Elapsed: 00:00:00.38
# Mc/sec: 1597.76
//
Query:       MMETSP1061-20121228|27885_1  [L=317]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.16    7.4  25.3      0.094    8.1   7.5    2.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        7.6    3.2  12.9        1.7    5.3   6.2    1.9  2  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   7.5   4.6e-05     0.094     806     949 ..      18     158 ..       5     163 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 4.6e-05
    TIGR02169 806 eevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepe 949
                  e+++r  ++l+ +++e     le +l ++     ++e ++ e q+++++  ie+ +++  +     +   a++  L++ ++ L+++ ++++ +l++l+ k++ l++++++ r+++k  ++ ++ ++ +++e+e++  e+ee+ e
  MMETSP1061-20121228|27885_1  18 ENLKRRTQKLDRVDQENLLDFLEDHLPSSTDTGTRKEKRNDELQRSDMAGDIESNQIRTTASIGTNDVGGAEEDSLDDDYELLQRDLDRANTKLEQLQTKRDFLHTRLQTYRSKIKVAEESMS-QNAKIHEYESS--ENEEICE 158
                  444555556666666544444666666667777778888889999999999999999988888888888999999***********************************9999998887765.56678888874..4555544 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   6.2   0.00082       1.7     130     233 ..      89     190 ..      49     251 .. 0.72
   2 ?   -1.7   0.0      0.11   2.3e+02     208     238 ..     267     290 ..     249     300 .. 0.56

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.00082
    TIGR01843 130 qeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklq 233
                  +e+ +++  + l+  l++ + +++ql+++++ l+ +lq++r+++++++e +    k+ e +  +  e+   e+ + +++++++ ++ +le ++  +d++e +l 
  MMETSP1061-20121228|27885_1  89 EEDSLDDDYELLQRDLDRANTKLEQLQTKRDFLHTRLQTYRSKIKVAEESMSQNAKIHEYESSENEEIC--EKRLVAMKEKIEGYKTSLEPIQDIYDHIESELL 190
                  556677777788889999999999999999999999999999999999999999999888777666664..455666777777777777766666666665543 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.11
    TIGR01843 208 qgelaeleaeleklkaeldeleeklqeleqk 238
                   +       ++e++k e ++++++++e+e k
  MMETSP1061-20121228|27885_1 267 DS-------DVENAKDEEAAIQKEMDETERK 290
                  33.......4444444444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (317 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       305  (0.074354); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1394.68
//
Query:       MMETSP1061-20121228|27900_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 881.93
//
Query:       MMETSP1061-20121228|27915_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1061-20121228|27917_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1506.88
//
Query:       MMETSP1061-20121228|27943_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|27968_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1219.33
//
Query:       MMETSP1061-20121228|27980_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 310.17
//
Query:       MMETSP1061-20121228|27974_1  [L=890]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-14   51.0   5.0    1.3e-13   48.0   3.5    2.1  1  TIGR04154 archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated


Domain annotation for each model (and alignments):
>> TIGR04154  archaeo_STT3: oligosaccharyl transferase, archaeosortase system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   3.5   3.2e-17   1.3e-13     125     554 ..     110     564 ..     107     567 .. 0.69

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 3.2e-17
    TIGR04154 125 tGllaalllavlpgqflsrslvGflDHhiaEvlfstlavlalllalkvaeeeklskerdldalkkplayavlaGialalylltwppavlfvlivgvfvlvqlvldllrgkspeylaivgavallvaavlvlpfiekslelsltsysllqvlallgvalglvllallarlverkdldrayypaavlglallgllvlalvlpslfsllisnllrfffgatat....altiaEaqpllleegelslaralsefglafllalaglllllyrllkkkskaeelfvlvWsvfilvatltqvRFeYylavnvavlsAyllswll....................................................leelkkelkkskkskkeketkkask............................ivvvvllilllvllvpsv.................aaaaaqssgpggankdWedsleWlkenTPdtgldyygiYeekddfdypeesYGVlSWWDYGhwItvigeRipna 554
                  ++  a  ++a++p++++ rs+ G +D    E +  t+++l++ + +++ +  +++          ++ ++++aG+ ++ ++ +w + ++++ ++gv ++  + + +++ k  ++ ++  ++  ++a+ + +p++  ++  sl ++    v++   v+ ++ ++ + +  ++r+++      a v++ +++++l+ +++ + +f  l s + + f+++t+t       +aE qp        s  + ++ ++    la +g+l+++  l       +  f+lvW  ++ ++    vR   + a + + l +++++ ++                                                    +                       k                            ++++++l++  +l v                    +  a+  +g+     d +++  Wl++nTP+ +                     ++ WWDYG  It++++R   a
  MMETSP1061-20121228|27974_1 110 CACCALGMMAIVPAHLM-RSVGGGYD---NESIANTAMILTFYFWVRSLR--NPQ----------SAWMGAIAGLSYFYMVASWGGYIFVLNLIGVHAAALVPMGRFSPKVYQSYSLFYVI--GTALAVQVPVVGWAPLKSLEQLGPCAVFLGYQVLRICEVIKGERS-MTRTQFLMLRVKAFVVLGIVATVLISMVAPSGYFGPLSSRVRGLFVQHTKTgnplVDSVAEHQP-------ASSRSYFQYLHHVCSLAPIGFLMVMFDLSD-----SSSFLLVWGTAAYFFSHRMVRLILLTAPIGSALGGIAAGRIFtwclqqwwenddslsaaqkesagngrsaksskkgskfrrpkkpsyaanndyeK-----------------------KsdahdaldslksgfdgalttseaglvkrAMAILFLLMGYILSV--NfshycwrlaqdlsnptiIVRARLRDGTVIKLDDYREAYWWLRDNTPEDS--------------------RIMAWWDYGYQITAMANRTTLA 564
                  66778899999999999.99999999...577788888888888887666..344..........6789****************************998777777776644444333333..222222233322223344555555555555555555555554433.5555555554445455445555555555555677767777777776666551122568999999.......8999999999*************9998866.....788*********************************99944444669999999999999998888888888766665544443333333332221.......................13344455666677777777777777654444444444444444..245889666666666665444445555578889****************9....................39****************8776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.27
# Mc/sec: 4350.75
//
Query:       MMETSP1061-20121228|27981_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.2e-54  180.5   0.2      1e-53  180.3   0.1    1.0  1  TIGR00419 tim: triose-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00419  tim: triose-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  180.3   0.1   2.6e-57     1e-53       1     228 []      29     268 ..      29     268 .. 0.92

  Alignments for each domain:
  == domain 1    score: 180.3 bits;  conditional E-value: 2.6e-57
    TIGR00419   1 lviinfKlnesvgkvelevaklaeevaseagvevavappfvdldvvkdeveseiqvaAqnvdavks.GaftGeisAemlkdlGakgvligHsErRsllkead...eliekkvarlkelglksvvCvgetleereaartinnvattaaaaA.......lepdvvAvEPveliGtGkpvskAeaevveksvrdhlkk.vskevaesvrvlyGasvtaaedaelaaqldvdGvLlasavlkae 228
                  l+++n+K+n++  +    v   +e  + +a+veva+ +p + ++ +   ++ +i v+Aqn  ++k+ Ga+tGe+  + lk lG+ +v+igHsErR  +  a    el ++k  ++ + glk++  +ge +eere + t+++ a + +  A       + ++ +A+EPv++iGtG ++++  a++ ++ +r +lk+ vs+e+   +r++yG+s+++a++  l aq+d+dG L+++a+lk +
  MMETSP1061-20121228|27981_1  29 LIGGNWKCNGTWDENLDRVKMFNECGSIPANVEVALCVPDINIPQLLAGLRKDIAVGAQNSGVNKGdGAYTGETGSHQLKALGVTWVIIGHSERREGFGMAGetvELCAEKCKVAIDNGLKVMFAIGEKKEEREGGITMDVCASQLEPLAkvltpedWASVAIAYEPVWAIGTGLTATPEMAQETHADIRTWLKTnVSEEIGVATRIQYGGSMKGANAEALLAQPDIDGGLIGGASLKDD 268
                  689*********************9999********************************9987644****************************8666655111566778888889*****************88888888888877777777888**************************************9*****************************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1667.86
//
Query:       MMETSP1061-20121228|28003_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 335.97
//
Query:       MMETSP1061-20121228|28025_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|28040_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2847.19
//
Query:       MMETSP1061-20121228|28060_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|28063_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1987.84
//
Query:       MMETSP1061-20121228|28089_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 347.34
//
Query:       MMETSP1061-20121228|28092_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 433.68
//
Query:       MMETSP1061-20121228|28093_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 479.33
//
Query:       MMETSP1061-20121228|28112_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       299  (0.0728913); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.46
# Mc/sec: 774.72
//
Query:       MMETSP1061-20121228|28118_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-06   22.5   0.1    2.1e-05   21.4   0.0    1.5  2  TIGR00387 glcD: glycolate oxidase, subunit GlcD


Domain annotation for each model (and alignments):
>> TIGR00387  glcD: glycolate oxidase, subunit GlcD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0      0.16   6.4e+02     125     163 ..      88     126 ..      88     127 .. 0.89
   2 !   21.4   0.0     5e-09   2.1e-05      92     196 ..     168     277 ..     162     303 .. 0.81

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 0.16
    TIGR00387 125 evvladGeilriggktvkdvaGydltkLlvgsEGtLgiv 163
                  ev +a  +il+  +  +k ++G    + +v  EGt gi+
  MMETSP1061-20121228|28118_1  88 EVAVAMDDILDNYKTGLKVRSGGHCYENFVMNEGTNGII 126
                  577788899999999999999999999********9997 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 5e-09
    TIGR00387  92 sqkastiGGniaenaGGlrglkYGvtvdyvlglevvladGeilriggktvkdvaGydltkLlvgs....EGtLgivteiilkllpk.Pelkkvllavfdsiekaaqavad 196
                  s  +  +GG i+ +  G+ +  YG+tvd++ g+e+v+ d     +  k v +++  d + L+ +     +G  g++t+   k lpk Pe +++    f+  ++ ++ + d
  MMETSP1061-20121228|28118_1 168 SCYSVGLGGHISGGGDGIMSRLYGTTVDWLTGIEIVVKDDPDQPAYVKYVGEKSEGDDADLFWACkgagNGNFGVITKYYFKELPKaPEGAVISTLAFNWHDDDGNVILD 277
                  6677889******************************998877777888877777777889986511126789*********8887366666666678888877776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 2634.89
//
Query:       MMETSP1061-20121228|28132_1  [L=178]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (178 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1118.76
//
Query:       MMETSP1061-20121228|28142_1  [L=986]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00087   14.9 105.4     0.0021   13.6  33.8    3.8  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   4.1   0.00019      0.77     753     892 ..      75     217 ..      55     246 .. 0.52
   2 !    7.2  18.9   4.5e-05      0.19     698     924 ..     356     583 ..     349     589 .. 0.65
   3 !    9.8  31.5   7.5e-06     0.031     672     952 ..     520     794 ..     511     797 .. 0.66
   4 !   13.6  33.8   5.2e-07    0.0021     240     486 ..     655     901 ..     648     910 .. 0.39

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.00019
    TIGR02168 753 qlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlk..eelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleeala 892
                  ++++  +e + ++e+ +++l+++++++k+++ ++ + + + + ++  +  k  re+l +le+e + + +++   ++++ + l +e++a++ +l++le++ e ++++  ++ + +++l+++  + e++l +  + k+s+ +++a
  MMETSP1061-20121228|28142_1  75 SAHQSTKETKLQIEKPSSMLTSSSKTTKKTNPTKSSRSPRSTSASspRPKKRARESLVKLEEEDEdDSNATSFYLRHQNRALASELRAVKYQLTRLEREREHRRKQCLQAVEFLNTLDATWGKVESDLIHQRNPKSSEIRNIA 217
                  33334444444444444444444444433333333333332222200233344444555554444444444445555555555555555555555555555555555555555555555555555555555555555444444 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 4.5e-05
    TIGR02168 698 lekelkelekeleeleeeleklrkeleel...erklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelre 924
                  l+++++++e+++ +l+e++++l +  +e    +r++++   +l++ + + +++ + +a+++++ e+++  +e++    ++ ++  + a+   ++ +a++++ + e+ ++++++++l++++ +l++ a++  e++++l +e+++++k++++l  + ++++ +i   ++e+++ +    el+++l+e + + ++l+e+ + +++e +++ ++ +  +k+++e++++ +++ +
  MMETSP1061-20121228|28142_1 356 LQEQISRVESQNMTLQEHVTELARSRDEViesDRRVRRGLYRLAARRVNLKEVLKAVANADEDKESAAVWMESNVGSNDSGTSLSASASGSEVASSAKVDKKEGEHPTSSKEFEQLKKQIADLNTLASSRDEKIKKLLSEKEEQTKRINTLVLKEDKTASDIP-TNEEVKRSDL-YLELTAKLAETTRSIEELNEKSNVIQKEWSTALADAEFSRKAMEEMQANFTKRWK 583
                  5666666666666666666665554444422277777777777777777777777777777777777777776666666666666777777788888899999999999999999999999999999999999999999999999999988888888887777.4444444443.2455555555555555555555555555555555555555555555554444433 PP

  == domain 3    score: 9.8 bits;  conditional E-value: 7.5e-06
    TIGR02168 672 ssilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleele.eqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeye 952
                  ++ ++r+    el+++++e++++i+el+++ + ++ke +++  ++e  rk+ ee++ +++++ kel +++ ++   +    + e  +++ ++e++ l+++l++a e+  +ae+++++l++ ++      ++l+++++e++a++++l++e a      +++++  +  +kel  ++ +++++ +  +e+  +++e+l++e +++++el++ +++k++++++l++ ++e+e ls+   +l k+++e+++   +  + + +l++  e+++ e ++l++++++ ++
  MMETSP1061-20121228|28142_1 520 NEEVKRSDLYLELTAKLAETTRSIEELNEKSNVIQKEWSTALADAEFSRKAMEEMQANFTKRWKELTEEKPNAGDTA--GGEGELSRTSTAKEIMMLQHKLTQAIENVRQAETTRQTLDEAVA----MNNSLQSKVDEFKAKYNTLQAEKAARG-SSNQHSNSSSTPSKELSSASkSKSSSYSTPMEKGDRSMEKLQREYKRARKELAATTASKDAAKAKLERTEKEKEHLSQMNSRLLKQASEKDEMNAKSLSTILHLKQLTEQITKEKENLEQQVKSAGQ 794
                  55566666677888888888888888888888888888888888888888888877777777777666555555554..44555556667777888888887777666666666666665554....445677778888888887777666433.4455555555555555555404555677888888889999999888888888888888888888888887776666666666666666666555555555555555555555566666665555554 PP

  == domain 4    score: 13.6 bits;  conditional E-value: 5.2e-07
    TIGR02168 240 eleeleeelkeaeeeleeleaelke..............leeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeel 486
                  ++++l++e+++  ++ +  ++  +               +++ +e+ ++ +++l++e+++++kel +++a +++ ++++e++++++e+l++ +++l +q  e+++ + ++      l++ +e++++e              +e+le++++++ + + ++r + ++ e+ +++ ++e++ l+++le+le++ + l +e+ ++e kl++ +a+++ l ++  + ++  eel+ e  +le++++++ e+l+ a+++  +a +  
  MMETSP1061-20121228|28142_1 655 KYNTLQAEKAARGSSNQHSNSSSTPskelssasksksssYSTPMEKGDRSMEKLQREYKRARKELAATTASKDAAKAKLERTEKEKEHLSQMNSRLLKQASEKDEMNAKSLSTILHLKQLTEQITKE--------------KENLEQQVKSAGQLALAARLASNARERVAEEFANEQKVLKRQLEELENKCSILAKEKVHAEGKLSQEKARMSGLISDAMKAKTRCEELAVESTKLEQEKQKIAESLAIAKREASEATNLS 901
                  3333333333333333333333333000000000000003333333333444444444444444444444444444444444444444444444444444444444444444444444444444444..............444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444443333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (986 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       563  (0.13725); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.72u 0.15s 00:00:00.87 Elapsed: 00:00:00.51
# Mc/sec: 2551.79
//
Query:       MMETSP1061-20121228|28157_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 281.19
//
Query:       MMETSP1061-20121228|28176_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|28189_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|28206_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00018   18.8   0.0    0.00031   18.0   0.0    1.4  1  TIGR03609 S_layer_CsaB: polysaccharide pyruvyl transferase CsaB


Domain annotation for each model (and alignments):
>> TIGR03609  S_layer_CsaB: polysaccharide pyruvyl transferase CsaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   7.6e-08   0.00031     175     272 ..     386     486 ..     317     509 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 7.6e-08
    TIGR03609 175 vivvsl.rkweeldverlekllealdrlqeetgaq.vlflpfqkeqD..lelaealaeklkkpaelleeedleelleliksaelvigmRlHalilAalagvp 272
                  +++v   +  +  d++++e +++ ld+++++tg+  v+f++   + D  + +++++ +k+++p+    +e+  e+++l+++a+ vig  lH  i++ + + p
  MMETSP1061-20121228|28206_1 386 YVAVQHgKMSQRPDSSYIEDMARGLDEVSRSTGNAtVVFFS-AGSIDsvDRISRRVMQKMTQPSLHYPTEHALEVVALLSKARAVIGTNLHVRIISLVYQKP 486
                  44444315556679999***************976155555.45555225899*********99998999999*********************99988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2969.75
//
Query:       MMETSP1061-20121228|28251_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 315.63
//
Query:       MMETSP1061-20121228|28272_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 481.76
//
Query:       MMETSP1061-20121228|28293_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 515.39
//
Query:       MMETSP1061-20121228|28300_1  [L=208]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (208 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1247.90
//
Query:       MMETSP1061-20121228|28314_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   11.3   1.0      0.059   11.1   0.7    1.1  1  TIGR03927 T7SS_EssA_Firm: type VII secretion protein EssA


Domain annotation for each model (and alignments):
>> TIGR03927  T7SS_EssA_Firm: type VII secretion protein EssA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.7   1.4e-05     0.059     119     150 ..      37      68 ..      29      69 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.4e-05
    TIGR03927 119 tektssilllvliaglillliagiyflirkvk 150
                  ++  s  +l ++i ++i+++i+ i+ ++r v+
  MMETSP1061-20121228|28314_1  37 ETRASEEILVIVILVIIIIIIVAIAAAARAVR 68 
                  45567778888888888888999999888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       326  (0.0794734); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 426.43
//
Query:       MMETSP1061-20121228|28325_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.9e-05   19.3   0.1    0.00053   16.9   0.0    2.0  1  TIGR02749 prenyl_cyano: solanesyl diphosphate synthase
    0.00025   18.1   0.1     0.0022   15.0   0.1    2.1  1  TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II


Domain annotation for each model (and alignments):
>> TIGR02749  prenyl_cyano: solanesyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   2.6e-07   0.00053      43     233 ..     105     310 ..      95     338 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 2.6e-07
    TIGR02749  43 gGkrlrPaivllvsrataeeeeltarh.rr...laeitelihtaslvhddvvdesdvrrgvetvhslfdtr..v....avlaGdflfaqaswylanlenle..vvkllskvikdfaeGeikqglnrfds..dlsledyleksyykta..slvaasskaaavlsevdsevaedlyeyGkhlGlafqvvddildftgsteklGkPaasd 233
                  gGk  r  +v+    a++ e+ +t+ +  +   l+  +e + +  lv dd++d s +rrg++   ++++    +    av    f++     ++a+ ++l+  +++l+ +   +   G++  +l    +  dl+ e +     ykt+  s+  + + a+++   +d++  ++      ++G+ fq  dd ld  ++ e lGk  + d
  MMETSP1061-20121228|28325_1 105 GGKMNRGLMVVESGVAIIGEDSITNDQlCQlavLGWAIEWLQAWLLVADDIMDSSVTRRGQPCWYKTLGDAwyIaindAVTIEAFVYKIIKRHFAHDGALQlsLMDLMLETTLQTELGQLSDTLCDVLTlkDLTPERWHLIVKYKTSfySFYLSVAFAMTLAGVTDQAAYDAARDILVEMGVYFQAQDDFLDCFATPEVLGKIGT-D 310
                  566666666666666666666655544234111445688889999****************99888887642231133567778999999999**98877511567776666666667777666554332266667776666678763355555555555556667777777778888***********************9643.3 PP

>> TIGR02748  GerC3_HepT: heptaprenyl diphosphate synthase component II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.1e-06    0.0022      41     230 ..     104     311 ..      74     358 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.1e-06
    TIGR02748  41 aGGkrirPvfvllagk..lgdydl..dklkkvav...alelihmaslvhddviddaelrrGketikskwdnriamytGdyllaksl..etite.i.edprvhkilsktivevc.lGeieqikdkynfdqnlrt.....ylrrikrkta.....lliaascqlGaivagadeeivkklyyfgyyvGmsyqiiddildfvgteeelGkPaGedl 230
                   GGk  r ++v+ +g   +g+  +  d+l ++av   a+e +    lv dd++d +  rrG++      ++   +   d +  +++  + i++ + +d ++   l + ++e + + e+ q+ d      +l++     +   +k kt+     l +a +  l +++ +a  +           +G+ +q  dd ld  +t e lGk +G d+
  MMETSP1061-20121228|28325_1 104 KGGKMNRGLMVVESGVaiIGEDSItnDQLCQLAVlgwAIEWLQAWLLVADDIMDSSVTRRGQPCWYKTLGDAWYIAINDAVTIEAFvyKIIKRhFaHDGALQLSLMDLMLETTlQTELGQLSDTLCDVLTLKDltperWHLIVKYKTSfysfyLSVAFAMTLAGVTDQAAYDAA---RDILVEMGVYFQAQDDFLDCFATPEVLGK-IGTDI 311
                  48888888888877632244333322445555544449*************************999999998766667766555541133332131233333346677776652689999999887655555411111445689999832222345555555555554444443...3444567888******************9.45555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 1643.86
//
Query:       MMETSP1061-20121228|28345_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.023   11.0  12.5      0.029   10.6   8.7    1.1  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   8.7   7.1e-06     0.029      10     104 ..      16     118 ..      10     134 .. 0.58

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 7.1e-06
    TIGR03490  10 ilpissislls....vvsCsttssnskqpekkpeakpeenkPkkpkkpdnkeksensnnksnseekde....eepkskkpekkpdpsknkeeiekpkkepkkp 104
                  +l++ss+s ++    vv  ++ s++ k++ k p+akp+ + P   ++++  +k+  ++ k+ s+ +++    ++  + ++e+ + ps  + ++++ + + + p
  MMETSP1061-20121228|28345_1  16 TLVVSSASDALaaapVVRRKKWSKAPKSDTKAPTAKPSTEAPSVKSEKKVGKKTGKKTSKKKSKSPKKgkvgKKETNAPVENSESPSAAPSTESPSEAPSEAP 118
                  678888876551111444455566667999************8766666666666655555444444401113444455555555555555555444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1050.41
//
Query:       MMETSP1061-20121228|28348_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 646.29
//
Query:       MMETSP1061-20121228|28356_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 687.73
//
Query:       MMETSP1061-20121228|28350_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-71  238.2   0.1    2.3e-59  198.2   0.0    2.1  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    8.1e-42  141.1   0.1    1.2e-34  117.6   0.0    2.1  2  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    1.2e-07   29.6   0.0    3.5e-07   28.1   0.0    1.7  1  TIGR02072 BioC: biotin biosynthesis protein BioC
     0.0061   13.7   0.0      0.017   12.3   0.0    1.9  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.0   0.1   2.2e-13   2.2e-10       1      43 [.      78     120 ..      78     123 .. 0.92
   2 !  198.2   0.0   2.3e-62   2.3e-59      38     223 .]     141     346 ..     129     346 .. 0.93

  Alignments for each domain:
  == domain 1    score: 38.0 bits;  conditional E-value: 2.2e-13
    TIGR01934   1 vqevFdeiakkYDllNdllSlGldrlWkkkavkkieeekeekv 43 
                  v+evF+++a++YD +Nd++S Gl+r+Wk+++++++++ + +++
  MMETSP1061-20121228|28350_1  78 VKEVFESVADSYDVMNDFMSGGLHRYWKDQLLDMSAVASMAHI 120
                  789*****************************99998877666 PP

  == domain 2    score: 198.2 bits;  conditional E-value: 2.3e-62
    TIGR01934  38 ekeekvlDvatGtGdlaielakkae............akvtgvDlseemLevakkkakek.......eeanvefieadaeeLp.fednsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilefskpknallkklyklYlknvlpsvgkllsknkeaYeYLaeSiekfpskeelaallkeagfeevryrsltfgvaaihvgkk 223
                  + + ++lDva+GtGd+++++ ++a+             +vt++D+++emL+v++++a++k        ++ ++f+e++a++L  fedn+fd++tiafGlRNvtd++k+L e++RVlkpggr+++lefs+++  +l++ly++Y++ v+p++g+l+++++++Y+YL+eSi+kf ++eel + + ++gf+ ++y+++t+g++aih g+k
  MMETSP1061-20121228|28350_1 141 NPALRILDVAGGTGDVSFRFLEAAGcperarssgvdpISVTVCDINTEMLRVGEARARKKygsslieDSKALSFTEGNAQDLHnFEDNTFDLYTIAFGLRNVTDVDKGLAEAYRVLKPGGRFMCLEFSQVADPFLRQLYDTYSFAVIPEMGELVANDRASYQYLVESIRKFSNQEELLTRMDNVGFHLTKYTNMTGGIVAIHEGWK 346
                  46789*****************9999999999***999**************999988765322333356799*********88**********************************************************************************************************************9987 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.4e-08   2.5e-05       2      43 ..      73     114 ..      72     122 .. 0.89
   2 !  117.6   0.0   1.2e-37   1.2e-34      47     231 .]     144     346 ..     115     346 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.4e-08
    TIGR02752   2 skeervhkvfekiykkydrmnsvisfkrhkkwrkdtmkrmnv 43 
                   ke rv++vfe++ ++yd+mn  +s   h+ w+++ + +  v
  MMETSP1061-20121228|28350_1  73 EKEGRVKEVFESVADSYDVMNDFMSGGLHRYWKDQLLDMSAV 114
                  59*******************************998876655 PP

  == domain 2    score: 117.6 bits;  conditional E-value: 1.2e-37
    TIGR02752  47 kkaldvccgtadwaialaeavg......keg....evkgldfsenmlsvgkekvkd.......aklenvelvhgnamel.pyednsfdyvtigfglrnvpdylqvlkemarvvkpggkvvcletsqptllgfkqlyflyfkyimpllgkllaksykeyswlqesarefpgkdelaelfkeaglkdvkvksytggvaamhlglk 231
                   ++ldv  gt+d +  + ea+g       +g    +v+  d+  +ml+vg+ + ++       ++ + +++  gna +l  +edn+fd  ti fglrnv d  + l e +rv+kpgg+ +cle sq   +  +qly  y   ++p +g l+a +   y +l es r+f  ++el   + ++g++  k+ + tgg+ a+h g+k
  MMETSP1061-20121228|28350_1 144 LRILDVAGGTGDVSFRFLEAAGcperarSSGvdpiSVTVCDINTEMLRVGEARARKkygssliEDSKALSFTEGNAQDLhNFEDNTFDLYTIAFGLRNVTDVDKGLAEAYRVLKPGGRFMCLEFSQVADPFLRQLYDTYSFAVIPEMGELVANDRASYQYLVESIRKFSNQEELLTRMDNVGFHLTKYTNMTGGIVAIHEGWK 346
                  5789************9999985432221223333567779999*****98776651222222355678999******956************************************************************************************************************************98 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.0   3.4e-10   3.5e-07      36     206 ..     144     332 ..     125     343 .. 0.78

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 3.4e-10
    TIGR02072  36 akvLdiGcGtGilt...........rallkrfpqaelialDiseemleqakkkls............nvqficgdiekl.plekksfDlivSnlalQWlddlsevlaelarvlkpgGllafstfgketlkElrqlfkqveahglrflsleelkallkkefellkleeelitlsFedvlevlrslKkvGannlsqk 206
                   ++Ld++ GtG ++           ra ++ ++  +++  Di  eml++ + + +            +++f +g+++ l ++e+++fDl + +  l  + d ++ lae++rvlkpgG +++  f++     lrql++        f  + e+ +l++++  ++++  e i+ +F++ +e+l  + +vG + ++ +
  MMETSP1061-20121228|28350_1 144 LRILDVAGGTGDVSfrfleaagcpeRARSSGVDPISVTVCDINTEMLRVGEARARkkygssliedskALSFTEGNAQDLhNFEDNTFDLYTIAFGLRNVTDVDKGLAEAYRVLKPGGRFMCLEFSQVADPFLRQLYD-----TYSFAVIPEMGELVANDRASYQYLVESIR-KFSNQEELLTRMDNVGFHLTKYT 332
                  5777777777766611111111111233344567789**********988777777788******************983578888*******************************98866666655555555555.....455*************9888888888876.89*******99999998877665 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   1.7e-05     0.017      38     150 ..     131     263 ..      99     339 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1.7e-05
    TIGR01983  38 kkklkknekkleglkvlDvGcGgGllsesl.........arlgae....vtgiDlseelievAklhakkdplk.......kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilf 150
                  + +++++e++   l++lDv  G G +s  +         ar++ +    vt  D+ +e+++v ++ a+k+          +++++  ++++l++ e+++fD+ ++   l  v+d+++ l e+ ++lkpgg  +
  MMETSP1061-20121228|28350_1 131 SGSISEEEETNPALRILDVAGGTGDVSFRFleaagcperARSSGVdpisVTVCDINTEMLRVGEARARKKYGSsliedskALSFTEGNAQDLHNFEDNTFDLYTIAFGLRNVTDVDKGLAEAYRVLKPGGRFM 263
                  444444445555788888888888666432122122222444332455699999999999987777666543334668879************************************************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1588.42
//
Query:       MMETSP1061-20121228|28390_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       380  (0.0926377); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 1773.24
//
Query:       MMETSP1061-20121228|28406_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.31
# Mc/sec: 383.19
//
Query:       MMETSP1061-20121228|28421_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0099   14.1   0.2      0.027   12.7   0.2    1.8  1  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
  ------ inclusion threshold ------
      0.037   12.2   0.3      0.062   11.5   0.2    1.4  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.2   1.3e-05     0.027       2      22 ..      25      49 ..      24      53 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
    TIGR01409  2 sRRdFLkaaaaagaaaglgl....l 22
                 +RR+ ++ a++ +aa g+++    l
  MMETSP1061-20121228|28421_1 25 DRRSAIQQAGISAAAFGTTTasglL 49
                 7*****************9766654 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2     3e-05     0.062       2      36 ..      17      51 ..      16      65 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3e-05
    TIGR02811  2 sdeqkadlsRRdLLkglavgaaagavaaatgrvas 36
                 s+++++++ RR+ ++++++ aaa + ++a+g ++ 
  MMETSP1061-20121228|28421_1 17 SNKNQNGMDRRSAIQQAGISAAAFGTTTASGLLLP 51
                 5667899***********************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 643.45
//
Query:       MMETSP1061-20121228|28423_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 731.94
//
Query:       MMETSP1061-20121228|28426_1  [L=782]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-14   50.9  10.1    2.6e-05   20.7   0.1    3.2  3  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
      7e-08   30.7   0.3     0.0052   15.0   0.0    3.3  3  TIGR01952 nusA_arch: NusA family KH domain protein, archaeal
    1.4e-07   29.3   1.9      0.075   10.6   0.0    3.5  3  TIGR03665 arCOG04150: arCOG04150 universal archaeal KH domain protein
    1.5e-05   22.0   0.1      0.055   10.3   0.0    2.4  2  TIGR01953 NusA: transcription termination factor NusA
    0.00016   18.0  10.0      0.012   11.9   1.3    3.1  3  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
     0.0015   16.2   1.0       0.56    7.8   0.0    3.2  3  TIGR01008 rpsC_E_A: ribosomal protein S3


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.4     2e-06    0.0014     554     615 ..     303     373 ..     300     379 .. 0.86
   2 !   20.1   0.6   5.8e-08     4e-05     551     625 ..     427     509 ..     414     520 .. 0.85
   3 !   20.7   0.1   3.8e-08   2.6e-05     547     624 ..     522     607 ..     510     611 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2e-06
    TIGR03591 554 tikinkdkireviGkgGkvireiieetgakidiedd.........Gtvkiaaadkeaaekakklieeitae 615
                  +i+i++  ++ +iG+gG++i +++ ++g+k++i+ +           +++ a+++e++++ +++ie+++++
  MMETSP1061-20121228|28426_1 303 SIRIPNGVVGFIIGRGGETISSMQARSGCKVQIQKEhelqpgqteRVITLQAVKQESIDECREIIESMVRD 373
                  6899999**************************98867777333335899999************999875 PP

  == domain 2    score: 20.1 bits;  conditional E-value: 5.8e-08
    TIGR03591 551 rietikinkdkireviGkgGkvireiieetgakidiedd........Gtvkiaaadkeaaekakklieeitaevevgkvyegk 625
                  ++ +++++   ++ +iGkgG++i+ i+e+tg++++i  +         +++i+  +++ ae+ak++i +i+++   ++  +g+
  MMETSP1061-20121228|28426_1 427 KLVKVEVPDADVGLIIGKGGSTIKYIQETTGSSVQIPHSatpenpaaRSISITCPTEQGAEAAKTQILNIIKNKMANNSQKGT 509
                  678999******************************98855555555579********************9998888877776 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 3.8e-08
    TIGR03591 547 eyaPrie.tikinkdkireviGkgGkvireiieetgakidiedd.......Gtvkiaaadkeaaekakklieeitaevevgkvyeg 624
                  +++P ++ ++ ++++ ++  iG+ G vir+++++t+++idi ++         +++++ ++ea+++ak+ i+ i++e    ++ +g
  MMETSP1061-20121228|28426_1 522 NQSPSVSlQVVVPNKDVGLCIGRQGCVIRQLQNKTDTRIDIPQQpppgqnvRVITVTGPTQEACNMAKTYIDRIVHEQSAASIMTG 607
                  5566664256788899*************************9988884333358889999****************9998888776 PP

>> TIGR01952  nusA_arch: NusA family KH domain protein, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   0.0     0.039        27      41      72 ..     308     339 ..     303     365 .. 0.82
   2 !   15.0   0.0   7.5e-06    0.0052      18      73 ..     412     466 ..     411     480 .. 0.84
   3 !    8.7   0.0   0.00065      0.44      37      68 ..     531     562 ..     522     576 .. 0.90

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.039
    TIGR01952  41 kgemgvAiGkgGanvkkveellgkkvelvees 72 
                  +g +g  iG+gG+++  ++++ g kv++ +e 
  MMETSP1061-20121228|28426_1 308 NGVVGFIIGRGGETISSMQARSGCKVQIQKEH 339
                  67889999999999999999999999886554 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 7.5e-06
    TIGR01952  18 dltgatvvDclvdDedrvvfv.vkkgemgvAiGkgGanvkkveellgkkvelveese 73 
                  d t+a v ++l + + ++v v v + ++g+ iGkgG+++k ++e+ g +v++  +s 
  MMETSP1061-20121228|28426_1 412 DNTDAKVEEALAEGH-KLVKVeVPDADVGLIIGKGGSTIKYIQETTGSSVQI-PHSA 466
                  57999*******998.7776659999***********************997.3444 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 0.00065
    TIGR01952  37 fvvkkgemgvAiGkgGanvkkveellgkkvel 68 
                   vv + ++g+ iG++G  +++++++ + ++++
  MMETSP1061-20121228|28426_1 531 VVVPNKDVGLCIGRQGCVIRQLQNKTDTRIDI 562
                  589999************************98 PP

>> TIGR03665  arCOG04150: arCOG04150 universal archaeal KH domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.1   0.00051      0.35       2      38 ..     304     340 ..     303     361 .. 0.85
   2 !   10.6   0.0   0.00011     0.075       2      34 ..     431     463 ..     430     498 .. 0.82
   3 !    7.9   0.0   0.00075      0.51       2      36 ..     531     565 ..     530     598 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00051
    TIGR03665   2 vkipkdrigvliGkkgevkkeieektkvkleidseeg 38 
                  ++ip+  +g +iG++ge+ ++++ + ++k++i++e++
  MMETSP1061-20121228|28426_1 304 IRIPNGVVGFIIGRGGETISSMQARSGCKVQIQKEHE 340
                  7899999*************************99864 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00011
    TIGR03665   2 vkipkdrigvliGkkgevkkeieektkvkleid 34 
                  v++p++ +g++iGk+g++ k i+e+t+ +++i 
  MMETSP1061-20121228|28426_1 431 VEVPDADVGLIIGKGGSTIKYIQETTGSSVQIP 463
                  678888888888888888888888888777764 PP

  == domain 3    score: 7.9 bits;  conditional E-value: 0.00075
    TIGR03665   2 vkipkdrigvliGkkgevkkeieektkvkleidse 36 
                  v +p++ +g+ iG++g v +++++kt+++++i ++
  MMETSP1061-20121228|28426_1 531 VVVPNKDVGLCIGRQGCVIRQLQNKTDTRIDIPQQ 565
                  6799999************************9775 PP

>> TIGR01953  NusA: transcription termination factor NusA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0   0.00015       0.1     296     337 ..     423     464 ..     414     467 .. 0.83
   2 !   10.3   0.0   8.1e-05     0.055     300     336 ..     527     563 ..     510     566 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.00015
    TIGR01953 296 dedkksaevvveeeqlslaiGkeGqNvrLaskLtgwkidvkt 337
                   e +k ++v v++ ++ l iGk+G+ ++ + + tg+ + + +
  MMETSP1061-20121228|28426_1 423 AEGHKLVKVEVPDADVGLIIGKGGSTIKYIQETTGSSVQIPH 464
                  34558899****************************999865 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 8.1e-05
    TIGR01953 300 ksaevvveeeqlslaiGkeGqNvrLaskLtgwkidvk 336
                   s +vvv+++++ l iG++G  +r   + t+ +id+ 
  MMETSP1061-20121228|28426_1 527 VSLQVVVPNKDVGLCIGRQGCVIRQLQNKTDTRIDIP 563
                  6789********************99999******96 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.1    0.0051       3.5     582     619 ..     303     340 ..     298     379 .. 0.82
   2 !   11.9   1.3   1.7e-05     0.012     577     645 ..     425     501 ..     413     517 .. 0.78
   3 !    6.5   0.5    0.0007      0.48     574     617 ..     521     565 ..     486     602 .. 0.73

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0051
    TIGR02696 582 avkipvdkigevigpkgkvinsiqdetgaeisieddgt 619
                  +++ip   +g +ig  g +i s+q  +g ++ i+++  
  MMETSP1061-20121228|28426_1 303 SIRIPNGVVGFIIGRGGETISSMQARSGCKVQIQKEHE 340
                  689*****************************998754 PP

  == domain 2    score: 11.9 bits;  conditional E-value: 1.7e-05
    TIGR02696 577 aprviavkipvdkigevigpkgkvinsiqdetgaeisieddgt........vyigaadgdsaeaaraainaianptl 645
                    ++++v++p   +g +ig  g +i  iq+ tg+ + i +  t        + i++   + aeaa+ +i  i+  ++
  MMETSP1061-20121228|28426_1 425 GHKLVKVEVPDADVGLIIGKGGSTIKYIQETTGSSVQIPHSATpenpaarsISITCPTEQGAEAAKTQILNIIKNKM 501
                  56899********************************9877654444444477888888889999888866665555 PP

  == domain 3    score: 6.5 bits;  conditional E-value: 0.0007
    TIGR02696 574 setaprv.iavkipvdkigevigpkgkvinsiqdetgaeisiedd 617
                  s+++p v ++v +p + +g  ig +g vi ++q++t + i i ++
  MMETSP1061-20121228|28426_1 521 SNQSPSVsLQVVVPNKDVGLCIGRQGCVIRQLQNKTDTRIDIPQQ 565
                  567787746899**************************9999764 PP

>> TIGR01008  rpsC_E_A: ribosomal protein S3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0      0.09        61      49      65 ..     311     327 ..     297     361 .. 0.81
   2 ?    3.9   0.0     0.013       8.7      48      68 ..     437     457 ..     427     478 .. 0.82
   3 !    7.8   0.0   0.00081      0.56      37      93 ..     526     587 ..     495     598 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.09
    TIGR01008  49 pglviGrrGrrirelte 65 
                   g++iGr+G++i  ++ 
  MMETSP1061-20121228|28426_1 311 VGFIIGRGGETISSMQA 327
                  589*********99886 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.013
    TIGR01008  48 rpglviGrrGrrireltellk 68 
                    gl+iG++G++i+ ++e+  
  MMETSP1061-20121228|28426_1 437 DVGLIIGKGGSTIKYIQETTG 457
                  5789************99865 PP

  == domain 3    score: 7.8 bits;  conditional E-value: 0.00081
    TIGR01008  37 plgtkviifaerpglviGrrGrrireltellkkkfglenp.....qieveevenpeldakvq 93 
                  ++  +v++  +  gl iGr+G  ir+l+++ +++ ++++      +++v  v  p+ +a  +
  MMETSP1061-20121228|28426_1 526 SVSLQVVVPNKDVGLCIGRQGCVIRQLQNKTDTRIDIPQQpppgqNVRVITVTGPTQEACNM 587
                  566789999999******************99988876531122245555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.51
# Mc/sec: 2023.83
//
Query:       MMETSP1061-20121228|28457_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.26
# Mc/sec: 284.28
//
Query:       MMETSP1061-20121228|28481_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 533.96
//
Query:       MMETSP1061-20121228|28483_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 494.96
//
Query:       MMETSP1061-20121228|28494_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 472.38
//
Query:       MMETSP1061-20121228|28484_1  [L=700]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   12.5  19.5     0.0066   12.0  13.5    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
     0.0053   13.9   6.8     0.0097   13.0   4.7    1.3  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
  ------ inclusion threshold ------
      0.019   10.5  17.4      0.027   10.0  12.1    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.049   10.6   3.6      0.079    9.9   2.5    1.2  1  TIGR00219 mreC: rod shape-determining protein MreC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0  13.5   6.4e-06    0.0066     672     807 ..     489     625 ..     460     643 .. 0.49

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.4e-06
    TIGR02168 672 ssilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkke.lerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalreal 807
                  +++le +k+++ l+ e+e+++e+++ l ++ +++e+e +++ e+++  +++ ++++ +++ + ++ +++ e + +q +++ +q e+e+ +le er+e ++e + ++ el ++++e++ ++ ++   ++++++ r+a+
  MMETSP1061-20121228|28484_1 489 QTLLEASKQMRALRHETEKAQEQMRPLADRCQAMEEEVRAAHEKTAISQRNHNSTKSEMKTQISSwMRKNEGTNQQRQAEQQQWEHERLRLEMERQEWKHEKSRLKRELRAVRQELALQRGSVSVGSRDHSDDRSAY 625
                  33444444444444444444444444444444444444444444444444444433333333222123333334444444444444444444444444444444444444444444444444444444444444444 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   4.7   9.4e-06    0.0097      42     171 ..     493     621 ..     469     678 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 9.4e-06
    TIGR03752  42 lspeelkalgiegdtpedtlrtlvaelkelrkelaklekeNeklkkenerlkkreesvderiqqal...eaekkelkkekeqlkeeqakleelldelqkkledvaaekesseedlpvglGleegdkaqseskd 171
                    +++++al  e +  ++ +r l+ + +++++e+++ +++  ++ ++n++ +k+  +++++i++ +   e+++++ ++e++q ++e+++le + +e +++ + ++ e ++ +++l +  G  + +++ +++ d
  MMETSP1061-20121228|28484_1 493 EASKQMRALRHETEKAQEQMRPLADRCQAMEEEVRAAHEKT-AISQRNHNSTKS--EMKTQISSWMrknEGTNQQRQAEQQQWEHERLRLEMERQEWKHEKSRLKRELRAVRQELALQRGSVSVGSRDHSD-D 621
                  4678999**************************99876654.444444444433..444455444411145678888889999999999999999998888888888888888888888887777776643.2 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  12.1   2.6e-05     0.027     342     482 ..     487     628 ..     445     638 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 2.6e-05
    TIGR02169 342 lereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlle.elkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeelekl 482
                  +++ + e  k+ ++l +e ++++e+++ l  + +++++e +++ e+++  +++ +++k+e++       r+ e + +++++e+++ ++e  r+e + +e ++e+  l+ e+++ +q+l   +  ++  ++ ++++++ ++++
  MMETSP1061-20121228|28484_1 487 FQQTLLEASKQMRALRHETEKAQEQMRPLADRCQAMEEEVRAAHEKTAISQRNHNSTKSEMKTQISSWMRKNEgTNQQRQAEQQQWEHERLRLEMERQEWKHEKSRLKRELRAVRQELALQRGSVSVGSRDHSDDRSAYSSI 628
                  4555666666777777777777777777777777777777777777777777777777777666555555554245566666777777777777777777777777777777777777776666666666666666666655 PP

>> TIGR00219  mreC: rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   2.5   7.7e-05     0.079      38     111 ..     529     601 ..     515     607 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 7.7e-05
    TIGR00219  38 sddetavtqnyylanaprelldgisenlkdlnkleleNkklrqellkknaqlelltqelkqENkrLrelLnsvl 111
                   +++ta++q  + + +  e+   is  +++ + ++ + ++ +q+  +    le+  qe k+E  rL+ +L  v+
  MMETSP1061-20121228|28484_1 529 AHEKTAISQRNHNS-TKSEMKTQISSWMRKNEGTNQQRQAEQQQWEHERLRLEMERQEWKHEKSRLKRELRAVR 601
                  45678888877555.899999************************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       267  (0.0650902); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.17s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 2639.78
//
Query:       MMETSP1061-20121228|28501_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1483.31
//
Query:       MMETSP1061-20121228|28558_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 618.26
//
Query:       MMETSP1061-20121228|28551_1  [L=443]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.052   11.1   0.0       0.11   10.1   0.0    1.5  1  TIGR02182 GRXB: glutaredoxin, GrxB family


Domain annotation for each model (and alignments):
>> TIGR02182  GRXB: glutaredoxin, GrxB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   2.6e-05      0.11       2      24 ..     156     178 ..     155     196 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 2.6e-05
    TIGR02182   2 LyiYdhCPfCvrarmifGlknip 24 
                  Ly+ + CP+C r+r+++ l++++
  MMETSP1061-20121228|28551_1 156 LYVGNPCPWCHRVRLVVNLLGLE 178
                  9***************9998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (443 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 2338.85
//
Query:       MMETSP1061-20121228|28564_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.8   0.0      0.019   12.3   0.0    1.3  1  TIGR02069 cyanophycinase: cyanophycinase


Domain annotation for each model (and alignments):
>> TIGR02069  cyanophycinase: cyanophycinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   4.6e-06     0.019      71     127 ..     112     168 ..      37     175 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4.6e-06
    TIGR02069  71 askeeeiallskadgifftGGDqlRitsllkdtpllarlrkrvkeGiilgGtsaGaa 127
                   ++e    ll++ad++  + G+ l  +   k  +l+  l+k  k+G++l+G saGa 
  MMETSP1061-20121228|28564_1 112 HEHERWSDLLETADVLVASCGNTLFAVDRWKHLELVPLLQKAAKRGCVLAGGSAGAI 168
                  3444556799*********************************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1401.12
//
Query:       MMETSP1061-20121228|28583_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 275.98
//
Query:       MMETSP1061-20121228|28575_1  [L=1145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.14s 00:00:00.58 Elapsed: 00:00:00.40
# Mc/sec: 3778.19
//
Query:       MMETSP1061-20121228|28599_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|28601_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2635.23
//
Query:       MMETSP1061-20121228|28621_1  [L=470]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (470 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 1824.56
//
Query:       MMETSP1061-20121228|28636_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-40  136.9   0.0    2.6e-40  136.4   0.0    1.2  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    4.1e-20   69.8   0.0    2.8e-19   67.0   0.0    2.1  1  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
    1.9e-05   22.3   0.0    4.5e-05   21.1   0.0    1.6  1  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.4   0.0   1.9e-43   2.6e-40      51     277 ..     240     495 ..     217     533 .. 0.77

  Alignments for each domain:
  == domain 1    score: 136.4 bits;  conditional E-value: 1.9e-43
    TIGR00005  51 gdlvtveveeeeeaevpvedkp..ldilfeDedilvidKPsglvvhpt..ggyekntvlnallahlkeel......vsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefk.skegtvdaplar........venkkglvavakss..gkeavTvfkvler.......dekaslvelkllTGRtHQiRVHlqy.lghplagDplYgnksvkgksleaeaklkrqaLhaselgfthpat.......g 277
                    +++v++++ +++ + +++ p  l ++feD++  +++KP+g+vv ++  gg  + tv  al ++    +      + r+++vhRLD+ TSGll++akt +a  +L++q+++++vkk+Y+a+v+g +k ++e  ++ap a         +  +k++++ +      k avT ++   +       ++  + velk+ TGR HQ+R H++   + p++gD+ Y          +    +++++L ++++ ++hp         g
  MMETSP1061-20121228|28636_1 240 VICIQVRIADGTAPAMRHQKPPfeLPVVFEDDHFAIVNKPAGIVVYAKrgGGEGFMTVRAALPFAVLPPKpgtystLRRPKPVHRLDKPTSGLLIIAKTMPAMVNLSQQFRDRKVKKTYTAIVNGIPKePTETVISAPEAHrigfdvnpDTASKWQMINS--VldEKSAVTAWRATRYsnsiqaiNNVLTTVELKPKTGRYHQLRRHMAWeCNSPIVGDNDYDGGGA-----AMGLREQGLFLCSNKVTLEHPFYndlekagG 495
                  3455566666677777777777999********************986115567889999999887655578999889***********************************************99878889999995542222211123334444444..3459******99887766666667789*******************963889********98777.....56777899************98744444441 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.0   0.0   2.1e-22   2.8e-19       2     167 ..     264     461 ..     263     468 .. 0.70

  Alignments for each domain:
  == domain 1    score: 67.0 bits;  conditional E-value: 2.1e-22
    TIGR01621   2 leilfrhsdfvlinksegisvhkddg..etglleevakqlgv...........ekvylvhrldkvtsGilllalnaesaselsrlfaekkikktylalsdkkpkkkqGliiG.........dmeksregawklvrs..kenpaitrfe......sv.siaeklrlfilkphtGkthqlrvalk.slGsailGdslygk 167
                  l ++f+ + f ++nk+ gi v+   g  e  ++   a   +v            +   vhrldk tsG+l++a+   +  +ls++f ++k+kkty a+ +  pk     +i          d++    + w++++s   e  a+t +       s+ +i++ l    lkp+tG+ hqlr  +     s+i+Gd+ y++
  MMETSP1061-20121228|28636_1 264 LPVVFEDDHFAIVNKPAGIVVYAKRGggEGFMTVRAALPFAVlppkpgtystlRRPKPVHRLDKPTSGLLIIAKTMPAMVNLSQQFRDRKVKKTYTAIVNGIPKEPTETVISapeahrigfDVNPDTASKWQMINSvlDEKSAVTAWRatrysnSIqAINNVLTTVELKPKTGRYHQLRRHMAwECNSPIVGDNDYDG 461
                  6799999999*******999986554114444444444333222111111111344569********************************************998777766111111112455555789****9855689999876422221134233444556679***********99973689******99976 PP

>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   3.3e-08   4.5e-05      30     129 ..     318     446 ..     306     454 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.3e-08
    TIGR00093  30 klaavGRLDrdseGlllltddgelqhrlth..pekevektYlvqvegsvtdedleal....rkGvkledektkpaklklikepel.......................ktklrvtlteGrnrqvrRlta 129
                  +  +v RLD+ ++Gll++++       l +  ++++v+ktY++ v+g++++ ++  +    ++ + ++ +++++ k ++i+++ +                        t ++++ + Gr++q+rR +a
  MMETSP1061-20121228|28636_1 318 RPKPVHRLDKPTSGLLIIAKTMPAMVNLSQqfRDRKVKKTYTAIVNGIPKEPTETVIsapeAHRIGFDVNPDTASKWQMINSVLDeksavtawratrysnsiqainnvLTTVELKPKTGRYHQLRRHMA 446
                  557999************9998888888773468899**********9988765443111134566777777777777776665577789**************99765688888899********766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2494.14
//
Query:       MMETSP1061-20121228|28663_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       597  (0.145539); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 552.40
//
Query:       MMETSP1061-20121228|28669_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|28662_1  [L=536]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (536 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2526.65
//
Query:       MMETSP1061-20121228|28678_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.1   1.4    0.00016   18.9   0.9    1.1  1  TIGR02997 Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
    0.00088   16.8   0.7    0.00094   16.7   0.5    1.1  1  TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD
      0.007   13.7   0.3     0.0076   13.6   0.2    1.1  1  TIGR02846 spore_sigmaK: RNA polymerase sigma-K factor


Domain annotation for each model (and alignments):
>> TIGR02997  Sig70-cyanoRpoD: RNA polymerase sigma factor, cyanobacterial RpoD-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.9   1.2e-07   0.00016     226     272 ..       8      55 ..       4      68 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 1.2e-07
    TIGR02997 226 eeeePeeeveeellkedleellae.LkererevlrlrfGledeeeltl 272
                  +e++ ++++ee + +edl+++l++ L+++e e l+ r+Gl de+e++ 
  MMETSP1061-20121228|28678_1   8 NEDHDRRRMEEAVANEDLRSVLSKhLRPKEMEALSWRYGLYDEDEQEE 55 
                  566677899*************866***************99887654 PP

>> TIGR02393  RpoD_Cterm: RNA polymerase sigma factor RpoD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.5   6.9e-07   0.00094     150     197 ..       5      53 ..       2      68 .. 0.82

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 6.9e-07
    TIGR02393 150 edeevespedaaakellkeeleevle.tlsereekvlklryGledgkek 197
                  +de+ ++ +  +++++ +e+l++vl+ +l ++e + l  ryGl d+ e+
  MMETSP1061-20121228|28678_1   5 SDENEDHDRRRMEEAVANEDLRSVLSkHLRPKEMEALSWRYGLYDEDEQ 53 
                  5677777888899999*********989***************998543 PP

>> TIGR02846  spore_sigmaK: RNA polymerase sigma-K factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   5.6e-06    0.0076     153     197 ..      10      55 ..       4      64 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 5.6e-06
    TIGR02846 153 dsvleavekklevkklkkkl.kvlkerekevielryGlkdgeektq 197
                  d+    +e+ +  ++l++ l k l+++e e ++ ryGl+d++e+  
  MMETSP1061-20121228|28678_1  10 DHDRRRMEEAVANEDLRSVLsKHLRPKEMEALSWRYGLYDEDEQEE 55 
                  444566788899999*****999****************9988754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 455.36
//
Query:       MMETSP1061-20121228|28673_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-09   33.5  13.6    2.1e-05   22.1   6.3    2.3  2  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.5e-06    0.0062       3      48 ..     239     284 ..     239     288 .. 0.94
   2 !   22.1   6.3   5.1e-09   2.1e-05      76     222 .]     290     434 ..     280     434 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.5e-06
    TIGR00803   3 sVPiliilkqnnlvlvalgnllaagkqvTqlkilstalmtlgslva 48 
                  sVP  +i+k++  + +a+g+   +g ++ ql+++ + +m  g++ a
  MMETSP1061-20121228|28673_1 239 SVPMVTIVKNLSNITTAIGDYYCFGNKQEQLVVVAFGIMLGGAVAA 284
                  8**************************************9888876 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 5.1e-09
    TIGR00803  76 ktlsegnlvvglsavlsallssglagvyfekilkdkdtsfyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                   +  +g +++ l++++s+  +++++    +  l ++  +fy+++l   +++ +  +++  ++  +  +      +y+ +  +++l   +  + +  +v++  +tt+   +al++++++ l+ +lfd  +s  + + + + + +++lY
  MMETSP1061-20121228|28673_1 290 TVSTKGLMWMALNCFSSSGYVLYMKHATEKVKLSKFGMVFYNNVLCVVFLLPVAAAMGQTMTFSTTPAIHT--PDYALKNLFAGLVGFLLNFASLNCVAVSGPTTYVTIGALNKVPVAFLGYWLFDSAISRETWFFIAVSMCGGFLY 434
                  567789***********************9999999999******99988888855555554444433333..78888888999888888899999*************************************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2480.30
//
Query:       MMETSP1061-20121228|28691_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|28701_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|28696_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.31
# Mc/sec: 1741.40
//
Query:       MMETSP1061-20121228|28702_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 342.35
//
Query:       MMETSP1061-20121228|28714_1  [L=646]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (646 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 2583.79
//
Query:       MMETSP1061-20121228|28746_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1685.86
//
Query:       MMETSP1061-20121228|28764_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 454.63
//
Query:       MMETSP1061-20121228|28769_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 541.16
//
Query:       MMETSP1061-20121228|28799_1  [L=289]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (289 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1733.86
//
Query:       MMETSP1061-20121228|28798_1  [L=1135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0013   16.1   0.8        0.2    8.9   0.1    2.5  2  TIGR03728 glyco_access_1: glycosyltransferase, SP_1767 family


Domain annotation for each model (and alignments):
>> TIGR03728  glyco_access_1: glycosyltransferase, SP_1767 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.1   4.8e-05       0.2      75     141 ..     433     500 ..     418     506 .. 0.74
   2 !    4.8   0.0   0.00084       3.5     102     140 ..     974    1013 ..     942    1019 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 4.8e-05
    TIGR03728  75 ekarsfwkkaleenkelykelikteklygdtfvsRpYidled.kskagsyfeklkeiWkdkdilivEG 141
                  ++  ++  +      +++k+l +  k ++   v R  +++++ k  a +++e+lkeiW++ ++l++  
  MMETSP1061-20121228|28798_1 433 RDFLHYKDSLYCAAGKIIKALNSEGKEWSTLHVRRGDLQYKEvKIPADEWYENLKEIWNEGELLFIAT 500
                  33334444444556677888888888888889999999999878899*****************9965 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.00084
    TIGR03728  102 ygdtfvsRpYidled.kskagsyfeklkeiWkdkdilivE 140 
                   y+   + R   ++++ k  a++++e+ keiWk  +i+++ 
  MMETSP1061-20121228|28798_1  974 YSAMHIRRGDFQYKKvKIPAEEWYENTKEIWKPNEIIFIA 1013
                   555566666666666577889****************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.43
# Mc/sec: 3483.90
//
Query:       MMETSP1061-20121228|28809_1  [L=1004]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1004 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.15s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 3786.20
//
Query:       MMETSP1061-20121228|28828_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 567.55
//
Query:       MMETSP1061-20121228|28829_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1963.34
//
Query:       MMETSP1061-20121228|28839_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.17
# Mc/sec: 613.36
//
Query:       MMETSP1061-20121228|28840_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 587.35
//
Query:       MMETSP1061-20121228|28842_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 725.94
//
Query:       MMETSP1061-20121228|28859_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   15.1   0.5     0.0062   14.2   0.3    1.3  1  TIGR04137 Chlam_Ver_rRNA: Chlam_Verruc_Plancto small basic protein


Domain annotation for each model (and alignments):
>> TIGR04137  Chlam_Ver_rRNA: Chlam_Verruc_Plancto small basic protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.3   1.5e-06    0.0062      25      46 ..      37      58 ..      37      61 .. 0.96

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.5e-06
    TIGR04137 25 RielLkkegrwkegdsvlGLpK 46
                 R++ +kk  +wk g+++ GL+K
  MMETSP1061-20121228|28859_1 37 RVTEMKKMYEWKLGKKPSGLKK 58
                 99*******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|28863_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 983.32
//
Query:       MMETSP1061-20121228|28857_1  [L=591]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-82  275.3   0.6    2.5e-81  271.3   0.4    2.0  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    0.00073   16.9   0.0     0.0013   16.0   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.3   0.4   1.2e-84   2.5e-81      47     416 ..     135     527 ..     109     532 .. 0.88

  Alignments for each domain:
  == domain 1    score: 271.3 bits;  conditional E-value: 1.2e-84
    TIGR01982  47 slgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvekllpeakrlrptevvkefektlkeEldlrlEaanaselkenfkndk...klivPevyweltservltlewidgipvsdleklkeaGldlkalaenlv...esflkqvlrdgfFHaDlHpGNilvakdgkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgepivgkp....lkeis..............igklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwk 416
                  s  + lr+ +e+lG +++KlGQ++++ + l+p+e++ e ++L dk  p++ + +++vie++lg  ++ +F+++++kPlA+ASiaQvh+A+l++g++V++Kv++Pgi++ ++ad++ ++ +++++e l p+++r   + vv ++++++ eEld++ Ea+n++e++  +++++   k + P+v+ e t+++v+t+e++ g+++ d e++ +   d++   ++++   ++  + v++  +FHaD+H+GN+l+  dg+i ++DfGivgr+s+++ +++ e+ +++   dyk +a+ + ++g++ +++d++++ ++i +v+++i +      + e+s              i +lL +l++ite+ +l+++ e+ LL K  l+ +   + l p+ld+++
  MMETSP1061-20121228|28857_1 135 SPPKALRTLFEKLGATYVKLGQFVASSPTLFPKEYVLEFQKLLDKTEPIEWRIIKRVIEKDLGP-ISRTFEYVDQKPLASASIAQVHAARLKTGEDVVIKVQKPGIDASLKADLSFVYVASRVLEFLQPDWERTSLSGVVGDIRSSMLEELDFTKEARNTEEFRSYLAQNNllnKATAPKVFQEFTTKKVFTMERLHGVSMLDEETISRVTKDPEVGQQAIItalNIWTQSVMQMPWFHADVHAGNLLLLDDGRIGFIDFGIVGRVSDKTFKAVNELSTSLALGDYKGMAQALCNMGATDEEVDVDKFGRDIETVMQRIANVQpditIAEMSdgslggsldfdeaeITNLLLELVEITEDNGLKLPREFGLLVKQSLYFDRYLKILAPELDVMS 527
                  55678999******************************************************95.5666*************************************************************************************************999862225589******************************999988755555441114567789*************************************************************************************998752233344433222222222222228899*************************9999999999999999876 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.5e-07    0.0013      41     146 ..     289     406 ..     278     454 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.5e-07
    TIGR03724  41 keRtrkEarllseakk..agvntPvvydvdpeekkivmeyiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskevedka 146
                  + R  +E+r   + ++  +  ++P v++  + +k  +me+++g  + d  + ++           +++++  ++  + +    h D++  N+++ +d+++ +iDfG+  + ++   ka
  MMETSP1061-20121228|28857_1 289 EARNTEEFRSYLAQNNllNKATAPKVFQEFTTKKVFTMERLHGVSMLDEETISRVtkdpevgqqAIITALNIWTQSVMQMPWFHADVHAGNLLLlDDGRIGFIDFGIVGRVSDKTFKA 406
                  56777777754333321156789********************987543322222236777887888999999999999999*********99868999*******866555555455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (591 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2785.91
//
Query:       MMETSP1061-20121228|28870_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1805.85
//
Query:       MMETSP1061-20121228|28876_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.34
# Mc/sec: 1440.23
//
Query:       MMETSP1061-20121228|28898_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1087.59
//
Query:       MMETSP1061-20121228|28899_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1406.19
//
Query:       MMETSP1061-20121228|28923_1  [L=1080]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.48
# Mc/sec: 2969.75
//
Query:       MMETSP1061-20121228|28963_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00086   16.3   0.0      0.044   10.7   0.1    2.7  3  TIGR01607 PST-A: Plasmodium subtelomeric family
  ------ inclusion threshold ------
      0.015   12.7   0.0      0.018   12.4   0.0    1.2  1  TIGR03101 hydr2_PEP: exosortase A system-associated hydrolase 2
      0.033   11.6   0.0      0.054   10.9   0.0    1.3  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases


Domain annotation for each model (and alignments):
>> TIGR01607  PST-A: Plasmodium subtelomeric family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.1   3.2e-05     0.044      67      90 ..      95     118 ..      84     137 .. 0.85
   2 ?   -0.0   0.0     0.057        78     140     168 ..     148     176 ..     141     252 .. 0.71
   3 ?    1.5   0.0     0.019        26     266     329 ..     275     341 .]     257     341 .] 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 3.2e-05
    TIGR01607  67 ieklnkeGysvyaldlqghGesdg 90 
                  i ++n +Gy+vy+ d  ghG s+g
  MMETSP1061-20121228|28963_1  95 IRRMNAKGYAVYSHDQLGHGFSEG 118
                  889******************998 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.057
    TIGR01607 140 krlplyivGlsmGgnialrvlellnkske 168
                  +  pl ++G s Gg +a+ v ++++ + +
  MMETSP1061-20121228|28963_1 148 EGTPLILAGDSYGGCLAFHVAHVFQTESQ 176
                  5689***************9999987766 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.019
    TIGR01607 266 yipk.dipllfihskddcicyyegvvlf..ynklnienkelytvedmdhvltiepGnekvlekiiew 329
                   ip  ++p    h  dd      g +    + k   ++kel  + d  h l  +   e+ l+  i+w
  MMETSP1061-20121228|28963_1 275 IIPTfNVPFHINHGSDDYGVPLRGSQQCfkFSKTPRSEKELNIIPDGYHGLFSQLDSEETLQHEIDW 341
                  455448999999999998777777665414789999**************************99999 PP

>> TIGR03101  hydr2_PEP: exosortase A system-associated hydrolase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   1.3e-05     0.018      45     124 ..      91     175 ..      38     178 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 1.3e-05
    TIGR03101  45 valqakalaaeGfgvlqiDlyGtGDSaGd...faeaswdvWkeDva.aalrwlkekga.qavtLwglrlgalLalelaaelkekv 124
                  +al+ +++ a+G+ v   D+ G G S+G+   + +  w++ ++D++ +al    ++ + +++ L g   g+ La  +a+ +++++
  MMETSP1061-20121228|28963_1  91 MALRIRRMNAKGYAVYSHDQLGHGFSEGErfyIPKGDWKINRDDLVtFALLAADDHPEgTPLILAGDSYGGCLAFHVAHVFQTES 175
                  6788899**********************44335789*******75156665555543268999999999999999998877765 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   3.9e-05     0.054      42     114 ..      92     168 ..      74     177 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 3.9e-05
    TIGR01250  42 leslkellkegvevilYDQLGsgkSdqPddsd.eklltidr...fvdEleevrekLaldkfyllgqSwGglLaqeYa 114
                     ++++ ++g  v+++DQLG g S+   +   +  ++i+r   +   l +  ++ + + + l g+S+Gg La + a
  MMETSP1061-20121228|28963_1  92 ALRIRRMNAKGYAVYSHDQLGHGFSEGERFYIpKGDWKINRddlVTFALLAADDHPEGTPLILAGDSYGGCLAFHVA 168
                  4578899999***************976543235566665521133344555566677779999*******998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 2045.83
//
Query:       MMETSP1061-20121228|28992_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0054   13.0   1.4     0.0058   12.8   1.0    1.1  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   1.0   1.4e-06    0.0058     253     354 ..      43     141 ..      29     200 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.4e-06
    TIGR03835 253 ddaeiissttlevtaqkeveqplqpepvdeetvaevkaeeesePvqtvetkpveavestveen.lPeinettqaveptsevistvsveatdqlkpkevdqiqe 354
                  ++    sst++   + ke+  + ++e+  + ++    ae++++ +  vet+p     + vee+   ei+     v+p+s+  s+ s+++ d ++p   d+i+ 
  MMETSP1061-20121228|28992_1  43 NEHYCKSSTAIGSVSTKEISGSNANEKLASGAP---PAETKARFLGEVETQPKVLKSTEVEEDdCDEIE-VVGVVQPQSSKYSSCSQDPLDLNQPSYNDEINL 141
                  5556678999999999***********999888...789999999999999999888888876156787.999**************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1082.31
//
Query:       MMETSP1061-20121228|29001_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        5.2    3.1   8.8        5.8    2.9   6.1    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   6.1    0.0014       5.8     336     416 ..      19      99 ..       3     118 .. 0.60

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0014
    TIGR00934 336 vrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksne 416
                  ++ +r + +d +++sd ++++ + d + mv ++ + ++ +    + +++ + ++++ + +++ ++n+++n n+++ ++sn+
  MMETSP1061-20121228|29001_1  19 KNNRRRNHRDDSSRSDASNSSANDDLRVMVASTASLFSASPAANEYQKQSSSSRKRNKDNNTTTNNNNNNHNENNGPNSNN 99 
                  334566777888888888888888888888777666666555555555555555555555555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 665.23
//
Query:       MMETSP1061-20121228|28994_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2    7.8   3.8       0.25    7.4   2.7    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   2.7   6.1e-05      0.25     133     252 ..     175     298 ..     163     360 .. 0.62

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 6.1e-05
    TIGR00934 133 eryfdgirdssrrnfklrrtktllereledrtetkvrtr.tqvslprksakrddfqeklfsGelvk.rdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpse..kfakrresr 252
                   +++ ++++  ++    +rtk+  +++  d+++t +      v +p  + ++++ +  ++ G+  + +d++++  ++ +++d  ++ s  + is + +d   +++++++  +e    ++ +es 
  MMETSP1061-20121228|28994_1 175 AKQIAELQRLQQQAEGGKRTKNAAKEKSDDDETTTTTETlAAVGVPSPEGRTEEHKASVIDGDASTsHDKKSNRIAPSEKSDNATENSITNGISDKAMDAEAKQQTQAQQEPEsdSEVETHESP 298
                  5555566666666666677777777777766544333332448888888888888888888887651444444444444444444445555555555555444444443332200222233333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2037.91
//
Query:       MMETSP1061-20121228|29027_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.8   0.1      0.033   11.7   0.1    1.0  1  TIGR00624 tag: DNA-3-methyladenine glycosylase I


Domain annotation for each model (and alignments):
>> TIGR00624  tag: DNA-3-methyladenine glycosylase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1     8e-06     0.033      57      83 ..       6      32 ..       2      48 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8e-06
    TIGR00624 57 rafsqfdiekvarytdadverlllddg 83
                 + f++fd e++a+ ++  ++rl++dd 
  MMETSP1061-20121228|29027_1  6 EWFEEFDQERIAESEKVPLDRLVMDDN 32
                 6799*********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|29032_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       291  (0.070941); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|29062_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.5    7.0   9.4        1.4    7.1   6.5    1.1  1  TIGR02898 spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family
        6.6    2.9  16.1        6.7    2.8  11.1    1.0  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR02898  spore_YhcN_YlaJ: sporulation lipoprotein, YhcN/YlaJ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   6.5   0.00069       1.4      13      53 ..      10      47 ..       1      66 [. 0.52

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00069
    TIGR02898 13 tgCtnaekkskdnnnveeknveekaangentakdtnqgekl 53
                 t C+++++++++++n++ +n++++    ++ ++d+n+++ +
  MMETSP1061-20121228|29062_1 10 TRCKTNHDNRNNSHNNNSHNNDSN---DDDSNDDNNNNNNN 47
                 556666555533333333333333...33333333332222 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8  11.1    0.0033       6.7      59      95 ..      13      49 ..       2      60 .. 0.49

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0033
    TIGR03490 59 sensnnksnseekdeeepkskkpekkpdpsknkeeie 95
                 + n  n++ns++++ ++++s++ ++++d+ +n+++++
  MMETSP1061-20121228|29062_1 13 KTNHDNRNNSHNNNSHNNDSNDDDSNDDNNNNNNNDN 49
                 2333444444555555555555555555444443332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 439.96
//
Query:       MMETSP1061-20121228|29072_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1085.91
//
Query:       MMETSP1061-20121228|29114_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                      179  (0.0436373); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 423.47
//
Query:       MMETSP1061-20121228|29134_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2700.28
//
Query:       MMETSP1061-20121228|29146_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 733.27
//
Query:       MMETSP1061-20121228|29137_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       347  (0.0845929); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 1692.90
//
Query:       MMETSP1061-20121228|29153_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.1e-18   62.7   0.3    6.9e-18   62.6   0.2    1.0  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    2.6e-07   27.5   0.3    3.1e-07   27.3   0.2    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    6.9e-06   23.3   0.0    8.7e-06   23.0   0.0    1.0  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    2.1e-05   21.3   0.1    2.5e-05   21.0   0.1    1.1  1  TIGR01813 flavo_cyto_c: flavocytochrome c
    0.00011   19.8   0.1    0.00014   19.5   0.1    1.1  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00037   17.0   0.1    0.00043   16.8   0.1    1.0  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    0.00062   16.8   0.0    0.00072   16.6   0.0    1.0  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
    0.00067   16.1   0.1    0.00087   15.8   0.1    1.1  1  TIGR01424 gluta_reduc_2: glutathione-disulfide reductase
    0.00073   16.2   0.1    0.00087   15.9   0.0    1.0  1  TIGR02731 phytoene_desat: phytoene desaturase
      0.001   16.3   0.0     0.0012   16.0   0.0    1.0  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
     0.0012   15.9   0.0     0.0014   15.7   0.0    1.0  1  TIGR01789 lycopene_cycl: lycopene cyclase
     0.0015   15.0   0.0     0.0015   15.0   0.0    1.0  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
     0.0017   15.2   0.0     0.0018   15.1   0.0    1.0  1  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
     0.0035   13.0   0.0     0.0037   12.9   0.0    1.0  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
  ------ inclusion threshold ------
      0.011   12.7   0.1      0.015   12.4   0.1    1.1  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
      0.012   12.4   0.1      0.014   12.2   0.0    1.1  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.013   12.0   0.0      0.015   11.8   0.0    1.0  1  TIGR02734 crtI_fam: phytoene desaturase
       0.02   11.6   0.0      0.022   11.4   0.0    1.1  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.021   11.5   0.0      0.023   11.3   0.0    1.1  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.023   11.4   0.4      0.028   11.1   0.3    1.1  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
      0.024   11.5   0.2      0.028   11.3   0.2    1.1  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
      0.026   11.2   0.1      0.032   10.9   0.1    1.1  1  TIGR03452 mycothione_red: mycothione reductase


Domain annotation for each model (and alignments):
>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.6   0.2   3.7e-20   6.9e-18       2      51 ..      32      83 ..      31      84 .] 0.93

  Alignments for each domain:
  == domain 1    score: 62.6 bits;  conditional E-value: 3.7e-20
    TIGR00031  2 fdyiivGaGlsGivlae.ilaklnkrvlvvekrnhiGGncydevdek.gllv 51
                 fd+ i GaGlsG+v+ae  +++lnk+v+v+ekrnhiGGncyd +d++ g+ v
  MMETSP1061-20121228|29153_1 32 FDVCIAGAGLSGAVIAErYASQLNKKVVVIEKRNHIGGNCYDYIDDEtGIRV 83
                 9****************899***********************998868865 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.3   0.2   1.6e-09   3.1e-07       1      40 [.      31      72 ..      31      74 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.3 bits;  conditional E-value: 1.6e-09
    TIGR01350  1 eydvvviGgGpgGYvaAir.aaqlglkvalvek.eklGGtCl 40
                 e+dv++ G+G +G v A r a+ql +kv+++ek +++GG C 
  MMETSP1061-20121228|29153_1 31 EFDVCIAGAGLSGAVIAERyASQLNKKVVVIEKrNHIGGNCY 72
                 69*************99984669**********99******6 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   4.7e-08   8.7e-06      14      59 ..      24      70 ..      19      73 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 4.7e-08
    TIGR00292 14 edlldyaesDviivGaGpsGLtaa.yylakeglkvvvlerklaiGGG 59
                 + ++d  e Dv i+GaG sG   a +y ++   kvvv+e++  iGG 
  MMETSP1061-20121228|29153_1 24 DSFDDKEEFDVCIAGAGLSGAVIAeRYASQLNKKVVVIEKRNHIGGN 70
                 678889999***********7655267777789************96 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.1   1.3e-07   2.5e-05       1      39 [.      33      71 ..      33      74 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.3e-07
    TIGR01813  1 dvvvvGsGlAGlsaaleakkaglaevvvleKapviGGNs 39
                 dv + G+Gl G   a +  ++  ++vvv+eK + iGGN 
  MMETSP1061-20121228|29153_1 33 DVCIAGAGLSGAVIAERYASQLNKKVVVIEKRNHIGGNC 71
                 799************99999999***************6 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   7.3e-07   0.00014       1      36 [.      32      68 ..      32      79 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 7.3e-07
    TIGR02032  1 yDvvvvGaGpaGssaAlrlakk.GlrVlllekkelpr 36
                 +Dv + GaG +G+ +A+r a++   +V+++ek++ ++
  MMETSP1061-20121228|29153_1 32 FDVCIAGAGLSGAVIAERYASQlNKKVVVIEKRNHIG 68
                 7***************8766542789******98876 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   2.3e-06   0.00043       4      50 ..      33      80 ..      30      83 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.3e-06
    TIGR00562  4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy..TrkesG 50
                 +v + G+G+sG  ia + + +  +  +v++E+++ +GG+ y    +e G
  MMETSP1061-20121228|29153_1 33 DVCIAGAGLSGAVIAERYASQ-LNKKVVVIEKRNHIGGNCYdyIDDETG 80
                 899************998877.5788*************9855555555 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   3.9e-06   0.00072       1      45 [.      33      77 ..      33      80 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 3.9e-06
    TIGR01790  1 DliviGgGlAglaiAlela.kpglrvqlieaapklpfnntygvwed 45
                 D+ + G+Gl+g +iA + a + + +v++ie ++++++ n y   +d
  MMETSP1061-20121228|29153_1 33 DVCIAGAGLSGAVIAERYAsQLNKKVVVIE-KRNHIGGNCYDYIDD 77
                 999***************99**********.666777777766665 PP

>> TIGR01424  gluta_reduc_2: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.1   4.7e-06   0.00087       2      40 ..      31      71 ..      30      73 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 4.7e-06
    TIGR01424  2 dydlfviGaG.sGGvraarlaaalGakvaiaeed.lvGGtc 40
                 ++d+ + GaG sG v a r+a++l +kv + e+   +GG c
  MMETSP1061-20121228|29153_1 31 EFDVCIAGAGlSGAVIAERYASQLNKKVVVIEKRnHIGGNC 71
                 69********8999***************99986269**99 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.7e-06   0.00087       2      44 ..      34      77 ..      33      82 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.7e-06
    TIGR02731  2 vaiagaglaglsaa.kyladaghtpivleardvlggkvaawkde 44
                 v+iagagl+g   a +y ++  ++ +v+e+r+ +gg    + d+
  MMETSP1061-20121228|29153_1 34 VCIAGAGLSGAVIAeRYASQLNKKVVVIEKRNHIGGNCYDYIDD 77
                 89********88763799999***************99887765 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   6.5e-06    0.0012       1      46 [.      34      80 ..      34      83 .. 0.89

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 6.5e-06
    TIGR03467  1 vvvvGgGlAGLaAAveLara.GvrvtllEarrqlGGRarsfedgslg 46
                 v + G+Gl+G   A + a++   +v ++E r+++GG +  + d+++g
  MMETSP1061-20121228|29153_1 34 VCIAGAGLSGAVIAERYASQlNKKVVVIEKRNHIGGNCYDYIDDETG 80
                 789************998873579**************999999887 PP

>> TIGR01789  lycopene_cycl: lycopene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   7.3e-06    0.0014       1      40 [.      33      71 ..      33      79 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 7.3e-06
    TIGR01789  1 dvivvGgGlagglialrlqdarPdlrilvieaaasigGnh 40
                 dv + G+Gl+g++ia r  ++  + +++vie  ++igGn 
  MMETSP1061-20121228|29153_1 33 DVCIAGAGLSGAVIAERYASQ-LNKKVVVIEKRNHIGGNC 71
                 899*************99765.6789************95 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   8.1e-06    0.0015     201     255 ..      20      77 ..      10      84 .] 0.79

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 8.1e-06
    TIGR03140 201 ekaeeaeeekekydvlvvGgGPagaaaa.iyaarkGlkvalvaer..iGGqvkdtvgi 255
                  + +e+++++ke++dv + G+G +ga  a  ya++   kv ++ +r  iGG   d  + 
  MMETSP1061-20121228|29153_1  20 DVSEDSFDDKEEFDVCIAGAGLSGAVIAeRYASQLNKKVVVIEKRnhIGGNCYDYIDD 77 
                  45889999***************99755279999999999998765599998887655 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   9.8e-06    0.0018       2      32 ..      33      63 ..      32      81 .. 0.91

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 9.8e-06
    TIGR03970  2 DvlvvGaGsaGsvlaarLsedpsatvtvlea 32
                 Dv + GaG +G+v+a+r + +  ++v+v+e 
  MMETSP1061-20121228|29153_1 33 DVCIAGAGLSGAVIAERYASQLNKKVVVIEK 63
                 99***************************96 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0     2e-05    0.0037     160     208 ..      24      72 ..      10      80 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2e-05
    TIGR01372 160 dtydkvnahcDvLvvGaGpaGLa.aAraAaraGarvilvdeqaeaGGsll 208
                  d++d      Dv ++GaG +G   a r A++   +v+++++++++GG+  
  MMETSP1061-20121228|29153_1  24 DSFDDKE-EFDVCIAGAGLSGAViAERYASQLNKKVVVIEKRNHIGGNCY 72 
                  4445444.45**********965166889999***************865 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.1   7.8e-05     0.015       2      41 ..      31      72 ..      30      74 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 7.8e-05
    TIGR01421  2 eydylviGGG.sGGiasarraaeyGakallvee.kklGGtcv 41
                 e+d+ + G G sG + + r a+++  k++++e+ +++GG c 
  MMETSP1061-20121228|29153_1 31 EFDVCIAGAGlSGAVIAERYASQLNKKVVVIEKrNHIGGNCY 72
                 68988888775888889999999********97357*****6 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   7.7e-05     0.014       2      32 ..      33      64 ..      32      72 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.7e-05
    TIGR02023  2 dvlviGggpsGaaaaetLaka.gievillere 32
                 dv + G+g sGa  ae  a++ +++v+++e++
  MMETSP1061-20121228|29153_1 33 DVCIAGAGLSGAVIAERYASQlNKKVVVIEKR 64
                 9***************998654999*****97 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.9e-05     0.015       2      43 ..      35      77 ..      34      83 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.9e-05
    TIGR02734  2 vViGaGlgGLAlAirLaaa.GievtvlekrdkpGGRagvleed 43
                 ++ GaGl+G   A r a++   +v v+ekr+++GG  + + +d
  MMETSP1061-20121228|29153_1 35 CIAGAGLSGAVIAERYASQlNKKVVVIEKRNHIGGNCYDYIDD 77
                 788*************9984578*************9988665 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012     0.022       1      33 [.      33      65 ..      33      77 .. 0.92

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00012
    TIGR01988  1 divIvGgGlvGlalAlaLassadlkvalveaka 33
                 d+ I+G+Gl G+++A + as+ ++kv ++e+++
  MMETSP1061-20121228|29153_1 33 DVCIAGAGLSGAVIAERYASQLNKKVVVIEKRN 65
                 89*****************999*******9974 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00012     0.023       1      33 [.      33      65 ..      33      77 .. 0.93

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00012
    TIGR01984  1 dviivGgglvGlslAlaLsrksklkialieaks 33
                 dv i G+gl+G+++A   +++ + k+ +ie+++
  MMETSP1061-20121228|29153_1 33 DVCIAGAGLSGAVIAERYASQLNKKVVVIEKRN 65
                 89*****************9999*******975 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.3   0.00015     0.028       1      34 [.      34      68 ..      34      70 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00015
    TIGR00275  1 viiiGgGaaGlmaAitaae.egakVlllEknkkig 34
                 v i G+G +G + A + a+  ++kV+++Ek+++ig
  MMETSP1061-20121228|29153_1 34 VCIAGAGLSGAVIAERYASqLNKKVVVIEKRNHIG 68
                 5799******999999888689**********998 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   0.00015     0.028       2      35 ..      34      68 ..      33      71 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00015
    TIGR03197  2 vavIGaGiAgaalalsLarr.Gvqvtllekdekla 35
                 v + GaG++ga++a++ a++   +v ++ek+++++
  MMETSP1061-20121228|29153_1 34 VCIAGAGLSGAVIAERYASQlNKKVVVIEKRNHIG 68
                 8899************99885889*****999887 PP

>> TIGR03452  mycothione_red: mycothione reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   0.00017     0.032       2      39 ..      31      72 ..      30      75 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00017
    TIGR03452  2 hydliiiGtGsGnsilderfe...dkriaivek.GtfGGtcl 39
                 ++d+ i G+G   +++ er++   +k++ ++ek    GG c 
  MMETSP1061-20121228|29153_1 31 EFDVCIAGAGLSGAVIAERYAsqlNKKVVVIEKrNHIGGNCY 72
                 8*********99999999998333479999998256899996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        42  (0.0102389); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 482.05
//
Query:       MMETSP1061-20121228|29170_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 639.11
//
Query:       MMETSP1061-20121228|29201_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.2   2.2      0.022   11.2   1.5    1.0  1  TIGR01270 Trp_5_monoox: tryptophan 5-monooxygenase
        1.6    6.8   7.2       0.18    9.8   0.8    2.0  2  TIGR03141 cytochro_ccmD: heme exporter protein CcmD


Domain annotation for each model (and alignments):
>> TIGR01270  Trp_5_monoox: tryptophan 5-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   1.5   1.1e-05     0.022      52     107 ..       7      61 ..       2      67 .] 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.1e-05
    TIGR01270  52 lqdkhinilhlesrklkkatsktldvlvdvevekeeleevlellksevdvlevtsv 107
                   ++++i+++hl  r+ k+++ + ++ lv+ + + +el e++e +k++ + ++ ++ 
  MMETSP1061-20121228|29201_1   7 CHERGIEVKHLT-RDEKRRQMQRINQLVNPDRTDQELMEIVESMKQKRQERKKEKQ 61 
                  6799*******6.5666666666**********************98777665554 PP

>> TIGR03141  cytochro_ccmD: heme exporter protein CcmD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.3     0.076   1.6e+02      32      39 ..      22      29 ..      15      33 .. 0.59
   2 ?    9.8   0.8     9e-05      0.18      23      45 ..      43      65 ..      42      67 .] 0.93

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.076
    TIGR03141 32 rrrllrel 39
                 +rr+++++
  MMETSP1061-20121228|29201_1 22 KRRQMQRI 29
                 45555555 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 9e-05
    TIGR03141 23 glivwslldrrrllrelrrlqar 45
                 ++iv+s+ ++r+ +++ +++q+r
  MMETSP1061-20121228|29201_1 43 MEIVESMKQKRQERKKEKQKQKR 65
                 79*******************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       512  (0.124817); expected 82.0 (0.02)
Passed bias filter:                      289  (0.0704534); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 401.97
//
Query:       MMETSP1061-20121228|29253_1  [L=623]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (623 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.11s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 2491.79
//
Query:       MMETSP1061-20121228|29266_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 516.48
//
Query:       MMETSP1061-20121228|29273_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|29265_1  [L=807]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.8e-227  753.3   0.1   2.3e-227  753.0   0.1    1.1  1  TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit
    2.5e-96  320.6   0.8      5e-58  194.4   0.0    2.3  2  TIGR01343 hacA_fam: homoaconitate hydratase family protein
    6.8e-84  279.8   0.6    5.2e-50  168.1   0.0    2.4  2  TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit
    7.4e-76  253.6   0.2    1.1e-45  154.2   0.0    2.4  2  TIGR02083 LEU2: 3-isopropylmalate dehydratase, large subunit
    4.3e-70  233.2   0.1    6.9e-70  232.6   0.1    1.3  1  TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit
      5e-66  221.0   1.5    2.4e-35  119.7   0.1    2.1  2  TIGR01342 acon_putative: putative aconitate hydratase
    3.4e-54  182.2   0.3    3.5e-28   96.2   0.5    3.2  2  TIGR00139 h_aconitase: homoaconitase
    7.7e-49  164.5   2.0    5.1e-38  128.7   1.7    3.0  2  TIGR01340 aconitase_mito: aconitate hydratase, mitochondrial
    2.1e-41  139.3   0.0    6.3e-32  108.0   0.0    2.2  2  TIGR01341 aconitase_1: aconitate hydratase 1
    9.5e-29   97.7   0.0    1.3e-22   77.3   0.1    2.3  2  TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent
    1.3e-26   91.1   0.2    5.6e-21   72.8   0.0    3.3  3  TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit
    1.2e-25   87.9   0.7    8.8e-24   81.8   0.1    2.7  2  TIGR02084 leud: 3-isopropylmalate dehydratase, small subunit
    1.3e-23   80.5   1.1    4.7e-19   65.5   0.0    2.9  3  TIGR00117 acnB: aconitate hydratase 2
  ------ inclusion threshold ------
      0.053   10.8   0.0      0.095   10.0   0.0    1.3  1  TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase


Domain annotation for each model (and alignments):
>> TIGR00170  leuC: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  753.0   0.1  7.7e-230  2.3e-227       2     465 ..      55     522 ..      54     523 .. 0.98

  Alignments for each domain:
  == domain 1    score: 753.0 bits;  conditional E-value: 7.7e-230
    TIGR00170   2 aktlyeklfdahvvkeaenetdllyidrhlvhevtspqafeglraagrkvrrvdktlatldhnistesr......dveikeekaklqvkeleknvkefgvklfdlssaeqgivhvvgpeegltlpgktivcgdshtathgafgalafgigtsevehvlatqtlkqaraktlkievegklakgitakdiilaiigkigvaggtgyvvefageairdlsmeermtvcnmaieagakagliapdettfeyvkdrkyapkgkefekavaywktlktdegakfdkvvtleakdispqvtwgtnpgqvlsvneevpdpksladpvekasaekalaylglepgtklkdikvdkvfigsctnsriedlraaaevvkgkkvadnvklalvvpgsglvkkqaekegldkifleagfewreagcslclgmnndvldeyercastsnrnfegrqgkgarthlvspamaaaaavagkfvdire 465
                   ktly+k+f+ h v e+++ ++llyidrhlvhevtspqafeglr a r vrr+d+tl t+dhn++te r      + +i+e +++ qv eleknv++fg+k+f++++++qgivh++gpe+g+tlpg+t vcgdshtathgafgalafgigtsevehvlat tl q + k++ i+++g+l + +t+kdiil i g ig+aggtg v+efag air+lsme+rm++ nmaieaga+agliapde+tfey+k+r+++p  ++++ av+ywk l +de+a++dkvv ++a+di+p+vtwgt+p++v ++++ vpdp++  d  +ka +e++l+y+gle ++ l+ +k+dk figsctn+ried+r+ a+++ g+kva++v+ a vvpgsglvkkqae egldki++eagf+wre+gcs+cl+mn+d+l++ ercastsnrnfegrqg g+rthl+spam+aaaa+ag + d+r+
  MMETSP1061-20121228|29265_1  55 GKTLYDKIFEDHTVTESDG-STLLYIDRHLVHEVTSPQAFEGLRLAKRGVRRPDCTLLTVDHNVPTEDRtelkdvQSFIQEINSRTQVLELEKNVERFGLKYFGMEDERQGIVHIIGPEQGFTLPGTTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQVKGKNFLIQIDGELDEAVTSKDIILHICGVIGTAGGTGSVIEFAGSAIRSLSMEARMSISNMAIEAGARAGLIAPDEITFEYLKGRPMSPSDEDWDAAVEYWKGLCSDEDAVYDKVVEIKAEDIAPTVTWGTSPQDVAPITGVVPDPEKAPDTARKAAMERSLNYIGLEGNQALEGVKIDKAFIGSCTNGRIEDIRNVAAIATGRKVAEGVH-AYVVPGSGLVKKQAEDEGLDKILIEAGFDWREPGCSMCLAMNDDKLKPQERCASTSNRNFEGRQGGGGRTHLLSPAMSAAAAIAGCLTDVRN 522
                  59*************9887.579********************************************9999995555789999******************************************************************************************************************************************************************************************************************************************************************************************************.*******************************************************************************************8 PP

>> TIGR01343  hacA_fam: homoaconitate hydratase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.4   0.0   1.7e-60     5e-58       5     282 ..      61     361 ..      57     364 .. 0.85
   2 !  124.2   0.2   3.5e-39     1e-36     282     410 ..     392     519 ..     386     521 .. 0.96

  Alignments for each domain:
  == domain 1    score: 194.4 bits;  conditional E-value: 1.7e-60
    TIGR01343   5 kiLakksgkevvaGdlivaevdlvlvhditaplaikaleelgidkvfdpekivivvdhavPaktikaaea.qk............lvrefvkkkGikyf..ydvgeGiahqvlaekglvkPgelvvgadshtctyGalgafatGvGstdlalaiatGkvWlkvPesikvkltGklkpgvtakdvvLevikeiGvdGatykavefegetvkkldveerltlanlaieaGgktGiieadektleylker.ake...........kakvvksdedaeyakeveidvsklepvvavPhevdnvkevsev 282
                  ki+ +++ +e     +    +d  lvh++t+p a++ l+      v+ p+ + + vdh+vP++++   ++ q             ++++ v+++G+kyf   d+++Gi+h + +e+g+  Pg++ v +dsht+t+Ga+ga+a G+G+ ++ +++at  +     + + ++++G+l++ vt+kd++L++++ iG+ G t  ++ef g  ++ l++e r+ ++n+aieaG+++G+i++de t eylk r + +            +k + sdeda y k+vei ++++ p+v++  ++++v+++++v
  MMETSP1061-20121228|29265_1  61 KIFEDHTVTESDG--STLLYIDRHLVHEVTSPQAFEGLRLAK-RGVRRPDCTLLTVDHNVPTEDRTELKDvQSfiqeinsrtqvlELEKNVERFGLKYFgmEDERQGIVHIIGPEQGFTLPGTTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQVKGKNFLIQIDGELDEAVTSKDIILHICGVIGTAGGTGSVIEFAGSAIRSLSMEARMSISNMAIEAGARAGLIAPDEITFEYLKGRpM-SpsdedwdaaveYWKGLCSDEDAVYDKVVEIKAEDIAPTVTWGTSPQDVAPITGV 361
                  5555554444332..334579***************998776.88****************98654322212211111111111145678999****98445888***************************************************99988889*********************************************************************************9952.336779999887777899********************************99876 PP

  == domain 2    score: 124.2 bits;  conditional E-value: 3.5e-39
    TIGR01343 282 vegievdqvfiGsCtnGrledLreaakilkgrkvaedvrliviPaskkvykqalkeGlieifveaGavvstpgCgpClGahqGvLaegevCistsnrnfkGrmGdkeaeiyLasPavaaasavkGriad 410
                  +eg+++d++fiGsCtnGr+ed+r++a i  grkvae v+  v+P s  v kqa +eGl +i++eaG    +pgC+ Cl +    L ++e+C stsnrnf+Gr+G    + +L sPa+ aa+a+ G ++d
  MMETSP1061-20121228|29265_1 392 LEGVKIDKAFIGSCTNGRIEDIRNVAAIATGRKVAEGVHAYVVPGSGLVKKQAEDEGLDKILIEAGFDWREPGCSMCLAMNDDKLKPQERCASTSNRNFEGRQGGG-GRTHLLSPAMSAAAAIAGCLTD 519
                  789*****************************************************************************************************85.678999************9987 PP

>> TIGR02086  IPMI_arch: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.1   0.0   1.8e-52   5.2e-50       2     280 ..      57     361 ..      56     364 .. 0.85
   2 !  109.5   0.2   1.2e-34   3.4e-32     279     410 ..     391     521 ..     387     522 .. 0.96

  Alignments for each domain:
  == domain 1    score: 168.1 bits;  conditional E-value: 1.8e-52
    TIGR02086   2 tlaekilsekvGkevkaGeivevkvDlvmvhDgtgplvikalrelgakvekkekivlvfDhvvPapt.veaaelqkeiref.........ak...elgikvf...dvgeGichqvlvekgyakpgkvvvgaDshtttsGalgafatGlGatDvalalatGktWlkvPesikveleGkleekvtakDvileivkelgadgatykaieftgeeiealsldeRltlsnlaveagakaglvepdeetleylkkrrge............frilkadedakyeeeieidlseleplvavPhsvdnvkeveev 280
                  tl +ki+ +++ +e   G + +  +D  +vh+ t+p++++ lr +   v++++  +l +Dh+vP+++  e+ ++q  i+e           k   ++g+k f   d  +Gi+h +  e+g+  pg+  v +Dsht+t+Ga+ga+a+G+G+++v  +lat  +     + + ++++G+l+e vt+kD+il+i++ +g+ g t+ +ief g+ i++ls++ R+++sn+a+eaga+agl+ pde t eylk r  +            ++ l +deda y++ +ei ++++ p+v+   s+++v +++ v
  MMETSP1061-20121228|29265_1  57 TLYDKIFEDHTVTESD-G-STLLYIDRHLVHEVTSPQAFEGLRLAKRGVRRPDCTLLTVDHNVPTEDrTELKDVQSFIQEInsrtqvlelEKnveRFGLKYFgmeDERQGIVHIIGPEQGFTLPGTTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQVKGKNFLIQIDGELDEAVTSKDIILHICGVIGTAGGTGSVIEFAGSAIRSLSMEARMSISNMAIEAGARAGLIAPDEITFEYLKGRPMSpsdedwdaaveyWKGLCSDEDAVYDKVVEIKAEDIAPTVTWGTSPQDVAPITGV 361
                  7788888888444332.3.3455689999***************999*****************975345555555444441000000003322256677642225568**************************************************99998889*********************************************************************************98776778999999999999**********************************99876 PP

  == domain 2    score: 109.5 bits;  conditional E-value: 1.2e-34
    TIGR02086 279 evegteidqvfiGsCtnGRledlkiaaeilegrevhkdvrlivvPasrkvyekaleeGlietlveaGaiiltpgCGPClGahlGvladgevivsttnRnfkGRmGspkaeiYLasPavaavsaveGeitdpe 410
                    eg++id++fiGsCtnGR+ed++ +a i  gr+v++ v+  vvP s  v ++a +eGl ++l+eaG    +pgC  Cl      l ++e++ st+nRnf+GR G    + +L sPa++a++a++G +td +
  MMETSP1061-20121228|29265_1 391 ALEGVKIDKAFIGSCTNGRIEDIRNVAAIATGRKVAEGVHAYVVPGSGLVKKQAEDEGLDKILIEAGFDWREPGCSMCLAMNDDKLKPQERCASTSNRNFEGRQGGG-GRTHLLSPAMSAAAAIAGCLTDVR 521
                  579******************************************************************************************************85.678999***************975 PP

>> TIGR02083  LEU2: 3-isopropylmalate dehydratase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.2   0.0   3.7e-48   1.1e-45       2     282 ..      57     358 ..      56     364 .. 0.82
   2 !   97.0   0.1   8.6e-31   2.5e-28     288     417 ..     393     521 ..     385     523 .. 0.95

  Alignments for each domain:
  == domain 1    score: 154.2 bits;  conditional E-value: 3.7e-48
    TIGR02083   2 tlaekiladkagkeevkpgelilakldlvlgndvttplaikafkelgvkkvfdkdkvalvldhftpn......kdikaaeqvklire..fakekeieky....f..eigelgvehallpekglvvsgdliigadshtctygalgafatgvgstdlavamatgkawfkvpeaikfvlkgklkdyvsakdlilkiigkigvdgalykslefsgeglkelsvddrltianmaieagaktgifevdektieyvkgr....akre.......lkiykadedakyervieidlselepqvafphlpentkei 282
                  tl +ki+ d++  e   ++   l+ +d  l  +vt+p a + ++ ++ + v  +d   l +dh  p       kd+++  q   +r+  +  ek++e++    f  e  + g+ h++ pe+g+ ++g   +  dsht t+ga+ga+a g+g++++  ++at        +   +++ g+l + v++kd+il+i g ig  g    ++ef+g ++++ls++ r++i+nmaieaga++g++ +de+t ey kgr    ++++        k   +deda y +v+ei  +++ p+v++   p++  +i
  MMETSP1061-20121228|29265_1  57 TLYDKIFEDHTVTE---SDGSTLLYIDRHLVHEVTSPQAFEGLRLAK-RGVRRPDCTLLTVDHNVPTedrtelKDVQSFIQEINSRTqvLELEKNVERFglkyFgmEDERQGIVHIIGPEQGFTLPGTTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQVKGKNFLIQIDGELDEAVTSKDIILHICGVIGTAGGTGSVIEFAGSAIRSLSMEARMSISNMAIEAGARAGLIAPDEITFEYLKGRpmspSDEDwdaaveyWKGLCSDEDAVYDKVVEIKAEDIAPTVTWGTSPQDVAPI 358
                  67788888887777...333445667888999*********998665.78*************999734444467777777666665113445667643333253356789**************************************************999888889999******************************************************************************9444423321111111344458***********************9999987766 PP

  == domain 2    score: 97.0 bits;  conditional E-value: 8.6e-31
    TIGR02083 288 eeikidqvvigsctngrledlrlaaeilkgkkvakevrliilpasqkvylealkeglleifieagavvstptcgpclgghmgilaegeravsttnrnfvgrmghpksevylaspavaaasaikgkiaspe 417
                  e +kid++ igsctngr+ed+r  a i  g+kva+ v   ++p+s  v ++a +egl +i+ieag     p c  cl      l  +er+ st+nrnf gr g    + +l spa++aa+ai+g +++ +
  MMETSP1061-20121228|29265_1 393 EGVKIDKAFIGSCTNGRIEDIRNVAAIATGRKVAEGVHAYVVPGSGLVKKQAEDEGLDKILIEAGFDWREPGCSMCLAMNDDKLKPQERCASTSNRNFEGRQGGG-GRTHLLSPAMSAAAAIAGCLTDVR 521
                  679***************************************************************************************************975.678999************998865 PP

>> TIGR00171  leuD: 3-isopropylmalate dehydratase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  232.6   0.1   2.3e-72   6.9e-70       3     188 .]     580     773 ..     578     773 .. 0.93

  Alignments for each domain:
  == domain 1    score: 232.6 bits;  conditional E-value: 2.3e-72
    TIGR00171   3 efkkltGlvvpldkanvdtdaiipkqflkkikrtGfgkhlfyewryl..dek...G...kepnpefvlnvpqyqgasillarenfGcGssrehapwalkdyGfkviiapsfadifynnsfkngllpirlseeeveellalvknkglkltvdleaqkvkdsegkvysfeidefrkhcllnGldeigltlqkedei 188
                  +f  l+G+++pld  n+dtd iipk+flk+ikr G+g  +f e ry   de    G    ++n +f+ln p+y+++sil+a++nfGcGssrehapw+++d G++ ii+ sfadifynn+f+ng+lp+ l++eeve ll+  ++   +ltvdl++qkv  ++g+  +feid+frk cllnGld+igltl k d+i
  MMETSP1061-20121228|29265_1 580 KFEVLKGKSAPLDIQNIDTDMIIPKEFLKTIKRAGLGFAAFAELRYEnaDEVatlGedvAKNNDDFILNKPEYKDTSILIAGDNFGCGSSREHAPWSINDMGIRCIISTSFADIFYNNCFNNGMLPLVLTREEVEVLLKDAEDADNELTVDLPNQKVIRANGESFEFEIDPFRKMCLLNGLDKIGLTLEKVDKI 773
                  578899****************************************844432222322257899******************************************************************************************************************************9987 PP

>> TIGR01342  acon_putative: putative aconitate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.4   0.1   5.5e-32   1.6e-29      92     281 ..     161     361 ..     113     364 .. 0.86
   2 !  119.7   0.1   8.2e-38   2.4e-35     281     587 ..     392     714 ..     388     742 .. 0.78

  Alignments for each domain:
  == domain 1    score: 100.4 bits;  conditional E-value: 5.5e-32
    TIGR01342  92 pgngichqvhker.fakpgktllgsdshtptagglgqlaigaggldvavamageayylkmpkvvnvrlkgklpewvtakdvilellrrlsvkgglgkvleytgegvkelsvperatitnmgaelgatssifpsdeitedylaaf...dreee.......fvelladadaeydevivvdlselepliaepsspdnvvpvrev 281
                    +gi h +  e+ f+ pg t +  dsht t g +g la g g  +v   +a  +      k   ++++g+l e vt+kd+il +   +   gg g v+e+ g  +++ls+  r +i+nm  e ga + ++  deit +yl+       +e+       +  l +d da yd+v++++  ++ p ++  +sp++v p+  v
  MMETSP1061-20121228|29265_1 161 ERQGIVHIIGPEQgFTLPGTTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQVKGKNFLIQIDGELDEAVTSKDIILHICGVIGTAGGTGSVIEFAGSAIRSLSMEARMSISNMAIEAGARAGLIAPDEITFEYLKGRpmsPSDEDwdaaveyWKGLCSDEDAVYDKVVEIKAEDIAPTVTWGTSPQDVAPITGV 361
                  45799**9998765***************************************999888888889****************************************************************************86422223444112222256699*********************************9765 PP

  == domain 2    score: 119.7 bits;  conditional E-value: 8.2e-38
    TIGR01342 281 vegikveqvvvgsctnsayvdllraakllegrevskdvvlivapgskqalellaregallellkagvrileaacgacigigfvp.asdsvslrsfnrnfkgragieddkvylaspevavaaaiageivdprdla..edeglkairvemgekysyg..deadi...diltkeeridvelikgpniks.lpvkeplgedvegevllkvednittdhiipat..adilklrsniealseyvlsrvdd..efver.akkld.......ekgkagvlvagenygqgssrehaalaprflgveavlaksfarihkanlvnfgvlpleidnkedy 587
                  +eg+k+++  +gsctn+  +d+ + a +  gr+v + v   v pgs    +    eg    l++ag    e  c  c+ +       +     + nrnf+gr g    + +l sp +++aaaiag + d r+     d   +  ++e +++ s     e ++   +i+ +     +++  g ++ s lp++e l    +g+ +    +ni td iip      i +      a++e  ++  d+  ++ e  ak+ d       e   + +l+ag+n+g gssreha  +   +g++++++ sfa i   n +n g+lpl +  +e  
  MMETSP1061-20121228|29265_1 392 LEGVKIDKAFIGSCTNGRIEDIRNVAAIATGRKVAEGVHAYVVPGSGLVKKQAEDEGLDKILIEAGFDWREPGCSMCLAMNDDKlKPQERCASTSNRNFEGRQGGG-GRTHLLSPAMSAAAAIAGCLTDVRNYPyiGDADKDPRKIETNNRGSRVfsTENFVspgPIIDPPAPYMKDVTEGGEVASgLPKFEVL----KGKSAPLDIQNIDTDMIIPKEflKTIKRAGLGFAAFAELRYENADEvaTLGEDvAKNNDdfilnkpEYKDTSILIAGDNFGCGSSREHAPWSINDMGIRCIISTSFADIFYNNCFNNGMLPLVLTREEVE 714
                  79******************************************************************************864313344556789*********76.678999******************974112333344445554443322225555523378999999999999999885449999876....6777766677*********86223455555567899999999999732333431344331222111335689***************************************************9977654 PP

>> TIGR00139  h_aconitase: homoaconitase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   1.7e-25   4.9e-23      33     243 ..      80     304 ..      56     312 .. 0.81
   2 !   96.2   0.5   1.2e-30   3.5e-28     319     654 ..     394     728 ..     386     731 .. 0.76

  Alignments for each domain:
  == domain 1    score: 79.2 bits;  conditional E-value: 1.7e-25
    TIGR00139  33 arcmshdnswpvalkfmslgasklknpdqivttldhdvqnkseknlkkyk.............qieefakkhgvefypa...grgighqimieegyafpltlavasdshsntygglgslgtpivrtdaaavwatgktwwqipp.vakvelkgvlpqgvsgkdvivalcglfnkddvlnhaieftgseeslralsvdtrltianmttewgalsglfpvdkvlkdwlknk 243
                   r + h+ + p a+  + l    ++ pd  ++t+dh+v      +lk  +             ++e+  ++ g++++      +gi h i  e+g++ p+t +v+ dsh+ t+g  g+l   i  ++   v at  t  q+      +++ g l + v+ kd+i+ +cg++         ief+g   ++r+ls++ r++i+nm+ e ga +gl+  d++  ++lk++
  MMETSP1061-20121228|29265_1  80 DRHLVHEVTSPQAFEGLRLAKRGVRRPDCTLLTVDHNVPTEDRTELKDVQsfiqeinsrtqvlELEKNVERFGLKYFGMedeRQGIVHIIGPEQGFTLPGTTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATS-TLPQVKGkNFLIQIDGELDEAVTSKDIILHICGVIGTAGGTGSVIEFAG--SAIRSLSMEARMSISNMAIEAGARAGLIAPDEITFEYLKGR 304
                  566788999999999999999999999999999999997766666654431111111111111344555566677765422158*************************************************97.6667665156799************************************..89*************************************98 PP

  == domain 2    score: 96.2 bits;  conditional E-value: 1.2e-30
    TIGR00139 319 dikvdkaylvsctnsrlsdlaaaadvvkeaaeknggkvnkva.gvkfyvaaasieeeldaeksgdwekllkagaiqlpagcgpciglgagllepgevgisasnrnfkgrmgskeakaylaspevvaasallgklsspaevlstegwtevirsegdgvkeedrlltneealekiigiledlvveeekraaseapkveeseqglveilegfpe..rvsgelvlcdadnvntdgiypgky...tyqddvpkekmarvcmenyda.............ef...stkvkegdilvsgfnfgtgssreqaatallakkinlvvsgsfgnifsrnsinnalltlevpa.lvkklrekyqsadkvlt 654
                   +k+dka++ sctn r+ d++  a + +      g    kva gv+ yv   s  ++ +ae++g  + l++ag      gc  c+ + +  l+p e   s+snrnf gr g    +++l sp++ aa+a++g l+   ++        +  +     k+  ++ tn+      +   e+ v  +   ++  ap +++  +g  e+  g+p+   + g+    d +n++td i p  +     +  +    +a++  en d              +f   + + k+  il++g nfg+gssre a  ++   +i  ++s sf +if  n  nn +l l + +  v+ l +  + ad++lt
  MMETSP1061-20121228|29265_1 394 GVKIDKAFIGSCTNGRIEDIRNVAAIAT------GR---KVAeGVHAYVVPGSGLVKKQAEDEGLDKILIEAGFDWREPGCSMCLAMNDDKLKPQERCASTSNRNFEGRQGGG-GRTHLLSPAMSAAAAIAGCLTDVRNYPY------IGDA----DKDPRKIETNNRGS--RVFSTENFVSPGPI-IDPPAPYMKDVTEG-GEVASGLPKfeVLKGKSAPLDIQNIDTDMIIPKEFlktIKRAGLGFAAFAELRYENADEvatlgedvaknndDFilnKPEYKDTSILIAGDNFGCGSSREHAPWSINDMGIRCIISTSFADIFYNNCFNNGMLPLVLTReEVEVLLKDAEDADNELT 728
                  69******************99887642......33...4444*******************************************************************986.688999************9987665533......3333....34443344665543..34567888888765.67888988877666.69999999632689999***************87632122334444444555555444211111111111112211234568889************************************************998876247777777777777776 PP

>> TIGR01340  aconitase_mito: aconitate hydratase, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.7   1.7   1.7e-40   5.1e-38      99     472 ..     124     517 ..     106     531 .. 0.80
   2 !   28.9   0.0   2.6e-10   7.7e-08     624     681 ..     656     713 ..     627     751 .. 0.80

  Alignments for each domain:
  == domain 1    score: 128.7 bits;  conditional E-value: 1.7e-40
    TIGR01340  99 eekdlarak.elnkevfdf.lesaakkygidfwk...pGsGiihqivlen.yavpGllmlGtdshtpnaGGlaaiaiGvGGadavdvlagipwelkapkvlGvkltGklsgwtspkdvilklaglltvkGGtGaiveyfGeGveslsctGmaticnmGaeiGattslfpfneaskdylkatnraeiaeeakvakdkaellkadkdaeydelieidlsklephvnGpftpdlstpiskf.......kekvkke......kw..........peklkvGliGsctnssyedmsrvasivkdaekaGlkskidftvtpGseqiratlerdgilevfekaGgvvlanacGpciGqwdrkdvvkkgekntiltsynrnfrgrndanratmaflaspelvtalsvaGsl 472
                  e kd+++ + e+n     + le   +++g+++++      Gi+h i  e+ +++pG   +  dsht   G ++a+a G+G ++  +vla         k + +++ G+l++ +++kd+il+++g++   GGtG ++e+ G  + sls     +i nm  e Ga + l+  +e + +ylk    +  +e+ ++a +  + l +d+da yd+++ei+ +++ p v    +p+   pi+          ++++k       ++            k+   +iGsctn   ed+  va i+       +   ++ +v pGs  ++   e +g  +++ +aG       c  c+   d  d + k + +   ++ nrnf gr+ +   t+  l sp + +a ++aG l
  MMETSP1061-20121228|29265_1 124 ELKDVQSFIqEINSRTQVLeLEKNVERFGLKYFGmedERQGIVHIIGPEQgFTLPGTTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQVKGKNFLIQIDGELDEAVTSKDIILHICGVIGTAGGTGSVIEFAGSAIRSLSMEARMSISNMAIEAGARAGLIAPDEITFEYLKGRPMSPSDEDWDAAVEYWKGLCSDEDAVYDKVVEIKAEDIAPTVTWGTSPQDVAPITGVvpdpekaPDTARKAamerslNYiglegnqaleGVKIDKAFIGSCTNGRIEDIRNVAAIATG---RKVAEGVHAYVVPGSGLVKKQAEDEGLDKILIEAGFDWREPGCSMCLAMND--D-KLKPQ-ERCASTSNRNFEGRQGGGGRTH--LLSPAMSAAAAIAGCL 517
                  4466666441455433222278889999999986222468****9998855*************************************99887766778888*****************************************************************************************99999999************************9888888777876431111111122222211111122222211111124667789************999999764...4456667789************************************98654..3.33333.3445667**********99998..67***********976 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 2.6e-10
    TIGR01340 624 wvvvaeenyGeGsarehaaleprylGgriiivksfarihetnlkkqGvlpltfanead 681
                   + +a  n+G Gs+reha  +   +G r ii  sfa i   n   +G+lpl ++ e+ 
  MMETSP1061-20121228|29265_1 656 SILIAGDNFGCGSSREHAPWSINDMGIRCIISTSFADIFYNNCFNNGMLPLVLTREEV 713
                  468999*********************************************9987653 PP

>> TIGR01341  aconitase_1: aconitate hydratase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.0   0.0   2.1e-34   6.3e-32     190     557 ..     181     524 ..     164     541 .. 0.83
   2 !   28.9   0.0   1.7e-10   4.9e-08     747     826 ..     653     736 ..     643     746 .. 0.78

  Alignments for each domain:
  == domain 1    score: 108.0 bits;  conditional E-value: 2.1e-34
    TIGR01341 190 slvGtdshttminGlGvlGwGvGGieaeaallGqpvslsvpeviGvkltGklreGvtatdlvltvtellrkkgvvgkfveffGeglkelsladratianmapeyGataaffpiddvtlqylrltgrdedkvelvekylkaqelfvddseepkytdvveldlsdveasvaGpkrpqdrvalkevkaafksslesnagekglalrkeakekklegkeaelkdgavviaaitsctntsnpsvllgagllakkavelGlkvkpyvktslapGskvvtdylaesgllpyleelGfnlvGyGcttciGnsGpleeeveeaikendlevsavlsGnrnfegrihplvkanylaspplvvayalaGtvdidlekep 557
                  + v  dsht+    +G l +G+G  e e +l    +  +  +   +++ G+l e vt+ d++l++  ++   g  g  +ef G ++++ls+  r +i+nma e Ga a++   d+ t++yl+    +  + +   +    ++l  d  e+++y +vve++ +d+ ++v+    pqd  +++ v  + ++    + + ++ a+++  +   leg++  l+  ++  a i sctn     +   a      a+  G kv + v + + pGs +v +   + gl + l e Gf+    Gc+ c+    +         k ++    +  + nrnfegr     + ++l sp +  a a+aG ++ d+++ p
  MMETSP1061-20121228|29265_1 181 TCVCGDSHTATHGAFGALAFGIGTSEVEHVLATSTLPQVKGKNFLIQIDGELDEAVTSKDIILHICGVIGTAGGTGSVIEFAGSAIRSLSMEARMSISNMAIEAGARAGLIAPDEITFEYLKGRPMSPSDEDWDAAVEYWKGLCSD--EDAVYDKVVEIKAEDIAPTVTWGTSPQDVAPITGVVPDPEK---APDTARKAAMERSLNYIGLEGNQ-ALEGVKIDKAFIGSCTNGRIEDIRNVA------AIATGRKVAEGVHAYVVPGSGLVKKQAEDEGLDKILIEAGFDWREPGCSMCLAMNDDKL-------KPQER---CASTSNRNFEGRQGGGGR-THLLSPAMSAAAAIAGCLT-DVRNYP 524
                  67899************************9976655444445555899*************************************************************************9766555444444444444677775..599******************************99886555...56677888999999999988865.69999************9877765554......667899999999***************************************97543322.......22222...22357*******988777.5799************885.555544 PP

  == domain 2    score: 28.9 bits;  conditional E-value: 1.7e-10
    TIGR01341 747 gvplvvlaGkeyGsGssrdwaakgtkllGvkaviaesferihrsnlvgmGvlplefkqged....aetlgltgeetidvddiee 826
                  +   +++aG ++G Gssr+ a  + + +G++++i+ sf  i   n    G+lpl +   e     +++ + + e t+d+++ + 
  MMETSP1061-20121228|29265_1 653 KDTSILIAGDNFGCGSSREHAPWSINDMGIRCIISTSFADIFYNNCFNNGMLPLVLTREEVevllKDAEDADNELTVDLPNQKV 736
                  445689************************************************987665411112334444444666666554 PP

>> TIGR02333  2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.1   4.6e-25   1.3e-22     182     536 ..     168     518 ..     156     540 .. 0.74
   2 !   17.8   0.0   4.5e-07   0.00013     729     788 ..     652     711 ..     643     750 .. 0.85

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 4.6e-25
    TIGR02333 182 vvqvkegvafpd.tlvgtdshtphvdalgviaigvggleaetvmlgraslmrlpdivg....veltgkrqpgitatdivlalteflrkekvvsayleffgegakaltlgdratisnmtpeygataamfaideqtidylkltgreeeqvklvetyakaaglwadslkkavyervlkfdlssvvrnlagpsnpharlatsdl......a...akgiakevee....eaeglmpdgavi.iaaitsctnt..snprnvvaagllarnanklglkrkpwvksslapgskvvklyleeagllkeleklgfgivafacttcngmsg.aldpviqqeiidrdlyatavlsgnrnfdgrihpyakqaflaspplvvayaiagtir 536
                  ++  ++g + p  t+v  dsht    a+g +a g+g  e e v+   +    lp++ g    +++ g+ + ++t+ di+l +   +      ++ +ef g   ++l++  r +isnm+ e ga a+++a de t++ylk     + +     +     gl +d  ++avy++v+++    +  +++  + p+   + + +      a   a+  a+e           +  +g  i  a i sctn    + rnv a +         g k    v++ + pgs  vk   e+ gl k l + gf      c+ c  m    l p   qe   r     +  + nrnf+gr      ++ l sp +  a aiag++ 
  MMETSP1061-20121228|29265_1 168 IIGPEQGFTLPGtTCVCGDSHTATHGAFGALAFGIGTSEVEHVLATST----LPQVKGknflIQIDGELDEAVTSKDIILHICGVIGTAGGTGSVIEFAGSAIRSLSMEARMSISNMAIEAGARAGLIAPDEITFEYLKGRPMSPSDEDWDAAVEYWKGLCSD--EDAVYDKVVEIKAEDIAPTVTWGTSPQDVAPITGVvpdpekApdtARKAAMERSLnyigLEGNQALEGVKIdKAFIGSCTNGriEDIRNVAAIA--------TGRKVAEGVHAYVVPGSGLVKKQAEDEGLDKILIEAGFDWREPGCSMCLAMNDdKLKP---QE---R-----CASTSNRNFEGRQGGG-GRTHLLSPAMSAAAAIAGCLT 518
                  56678899999637*****************************97654....5555443333899*************************************************************************9655444443333333344588888..69********9999999888866666654433322111111211133333332223342222344556555247799****7224678876544........4555666799999************************************997413333...33...2.....23457*******8765.567888************985 PP

  == domain 2    score: 17.8 bits;  conditional E-value: 4.5e-07
    TIGR02333 729 rkqpliiiagadygqgssrdwaakgvrlagveaivaegferihrtnlvgmgvlplefkpg 788
                   k+  i+iag ++g gssr+ a   +   g+ +i++  f  i   n    g+lpl +  +
  MMETSP1061-20121228|29265_1 652 YKDTSILIAGDNFGCGSSREHAPWSINDMGIRCIISTSFADIFYNNCFNNGMLPLVLTRE 711
                  57888*************************************************987654 PP

>> TIGR02087  LEUD_arch: 3-isopropylmalate dehydratase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   0.1      0.19        55      26      77 ..     217     273 ..     202     282 .. 0.83
   2 !   12.8   0.0   5.7e-05     0.017       9      45 ..     595     631 ..     592     647 .. 0.90
   3 !   72.8   0.0   1.9e-23   5.6e-21      46     137 ..     653     751 ..     639     766 .. 0.75

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.19
    TIGR02087  26 lkelakhamegidpefakkvreGdvi.....vaGknfGiGssreqaalalkaaGvaa 77 
                  ++  +k  +++id e+ + v + d+i     v G   G Gs  e a  a++ + ++a
  MMETSP1061-20121228|29265_1 217 PQVKGKNFLIQIDGELDEAVTSKDIIlhicgVIGTAGGTGSVIEFAGSAIRSLSMEA 273
                  556677889999999*****999999676677899**************99988776 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 5.7e-05
    TIGR02087   9 dvdtdaiiPgrylrttdlkelakhamegidpefakkv 45 
                  ++dtd+iiP ++l+t++   l+  a+++++ e a +v
  MMETSP1061-20121228|29265_1 595 NIDTDMIIPKEFLKTIKRAGLGFAAFAELRYENADEV 631
                  8***************************999988776 PP

  == domain 3    score: 72.8 bits;  conditional E-value: 1.9e-23
    TIGR02087  46 reGdvivaGknfGiGssreqaalalkaaGvaaviaesfarifyrnainvGlpli.vaedvtel.....ikdGdevevdlekgeirkvakke.vlkleel 137
                  ++  +++aG nfG+Gssre+a+ +++ +G++++i+ sfa ify n  n+G+  + ++++ +e+      +  +e++vdl ++++++ ++++ +++++++
  MMETSP1061-20121228|29265_1 653 KDTSILIAGDNFGCGSSREHAPWSINDMGIRCIISTSFADIFYNNCFNNGMLPLvLTREEVEVllkdaEDADNELTVDLPNQKVIRANGESfEFEIDPF 751
                  6789**********************************************7555044454443111104456789****99999875553314444455 PP

>> TIGR02084  leud: 3-isopropylmalate dehydratase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.0       2.9   8.4e+02      46      72 ..     237     268 ..     212     277 .. 0.70
   2 !   81.8   0.1     3e-26   8.8e-24       9     140 ..     595     754 ..     592     769 .. 0.72

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 2.9
    TIGR02084  46 kegdil.....vagknfgcgssrehapiaika 72 
                     di+     v g+  g+gs  e a  ai+ 
  MMETSP1061-20121228|29265_1 237 TSKDIIlhicgVIGTAGGTGSVIEFAGSAIRS 268
                  44444433334678999999999999999876 PP

  == domain 2    score: 81.8 bits;  conditional E-value: 3e-26
    TIGR02084   9 nvdtdviiparylntsdpkel............akhcm...edldk...ef...kkkvkegdilvagknfgcgssrehapiaikasgiscviaksfarifyrnainig.lpiveseeavd....eleegd.evevdl.ekgiiknvkkgkeykakpfpef 140
                  n+dtd+iip  +l t +   l            a+ +    ed+ k   +f   k + k+ +il+ag nfgcgssrehap +i   gi c+i+ sfa ify n+ n g lp+v ++e v+    ++e+ d e+ vdl ++ +i+   ++ e+++ pf ++
  MMETSP1061-20121228|29265_1 595 NIDTDMIIPKEFLKTIKRAGLgfaafaelryenADEVAtlgEDVAKnndDFilnKPEYKDTSILIAGDNFGCGSSREHAPWSINDMGIRCIISTSFADIFYNNCFNNGmLPLVLTREEVEvllkDAEDADnELTVDLpNQKVIRANGESFEFEIDPFRKM 754
                  899999999999988765433221111111111333322236665434467544457899**********************************************995689877776642222667766379****445799*999**********875 PP

>> TIGR00117  acnB: aconitate hydratase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.1   3.2e-05    0.0095     476     543 ..     175     245 ..     159     258 .. 0.85
   2 !   65.5   0.0   1.6e-21   4.7e-19     646     818 ..     321     526 ..     296     541 .. 0.91
   3 ?    0.2   0.0     0.085        25     253     288 ..     674     709 ..     638     717 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.2e-05
    TIGR00117 476 mllpdtvgtggdshtrf..plg.isfpagsglvafaaatgvmpldmpesvlvrfkgelqpgitlrdlvnai 543
                  + lp t    gdsht     +g ++f  g+  v    at ++p    +  l+++ gel+  +t +d++  i
  MMETSP1061-20121228|29265_1 175 FTLPGTTCVCGDSHTAThgAFGaLAFGIGTSEVEHVLATSTLPQVKGKNFLIQIDGELDEAVTSKDIILHI 245
                  689***********97522455479*****************************************99766 PP

  == domain 2    score: 65.5 bits;  conditional E-value: 1.6e-21
    TIGR00117 646 elleadadaeyaavieidlaeikepilaapndpddvkllsevagd...............................aidevfigscmt.nighfraagkileaaktvk.arlwvvpptrmdeqqlieegyyaifgaagartevpgcslcmg.nqarvedgatvfststrnfdnrlgkgakvylgsaelaavaallgkiptkeeylal 818
                  + l +d da y +v+ei+ ++i  p ++    p+dv++++ v  d                               +id+ figsc    i   r ++ i  + k  +    +vvp + + ++q  +eg+  i+ +ag     pgcs+c+  n+ +++ +    sts rnf+ r g g + +l s  ++a+aa+ g +  + +y  +
  MMETSP1061-20121228|29265_1 321 KGLCSDEDAVYDKVVEIKAEDIA-PTVTWGTSPQDVAPITGVVPDpekapdtarkaamerslnyiglegnqalegvKIDKAFIGSCTNgRIEDIRNVAAIATGRKVAEgVHAYVVPGSGLVKKQAEDEGLDKILIEAGFDWREPGCSMCLAmNDDKLKPQERCASTSNRNFEGRQGGGGRTHLLSPAMSAAAAIAGCLTDVRNYPYI 526
                  45789****************96.999999********************************************************7536**************96651589*************************************965999*****************************************99999888654 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.085
    TIGR00117 253 pfvpnkragglvlggkiapiffntaedsgalpievd 288
                  p+  n  +   ++    a if+n + + g lp++  
  MMETSP1061-20121228|29265_1 674 PWSINDMGIRCIISTSFADIFYNNCFNNGMLPLVLT 709
                  555566677789999999999999999999999865 PP

>> TIGR01263  4HPPD: 4-hydroxyphenylpyruvate dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00032     0.095     115     211 ..      70     165 ..      50     174 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00032
    TIGR01263 115 kgiGdvvltlveregekgsilpgfeevsekaalkekledvgleaiDHvvgnvergelekvaefyekilgfkeiksfdikteasaLkSkvlasaegkv 211
                  ++  +++l +++r+  ++   p+ +e  + a+   + +d +l ++DH v   +r el+ v +f+++i   +++ + + ++e  +Lk   ++++ + +
  MMETSP1061-20121228|29265_1  70 ESD-GSTLLYIDRHLVHEVTSPQAFEGLRLAKRGVRRPDCTLLTVDHNVPTEDRTELKDVQSFIQEINSRTQVLELEKNVERFGLKYFGMEDERQGI 165
                  334.477888999999999999999999999999999********************************9999999999999999888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (807 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.70u 0.17s 00:00:00.87 Elapsed: 00:00:00.56
# Mc/sec: 1902.06
//
Query:       MMETSP1061-20121228|29285_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|29300_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0059   13.4   0.1     0.0097   12.6   0.1    1.3  1  TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme


Domain annotation for each model (and alignments):
>> TIGR01437  selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.1   2.4e-06    0.0097     108     186 ..      63     142 ..      42     158 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.4e-06
    TIGR01437 108 hnvdyGapvetmvalgGgkvveaGyanecsaeqleaaitektaailyikshha.vqksmlsveeavkvakehklPlivda 186
                  ++ + G  v++++a+   ++v++ ++ ++sa + +++++e+t   +y  sh a v+k  +++++   va+++ +P i   
  MMETSP1061-20121228|29300_1  63 NQLKRGGNVSQALAQFAQQLVDVMKSVSTSALEQAKKVKEHTDDQFYFASHKAiVKKYRQQIQTKEAVAHTYPFPEIARQ 142
                  66778999*******************************************9835667899***********99988655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       356  (0.0867869); expected 82.0 (0.02)
Passed bias filter:                      164  (0.0399805); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1541.87
//
Query:       MMETSP1061-20121228|29303_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 2185.74
//
Query:       MMETSP1061-20121228|29304_1  [L=864]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.89    7.7  25.2        1.2    7.4   0.0   10.9 12  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.2     0.072   2.9e+02       2      11 ..     160     169 ..     159     172 .. 0.87
   2 ?   -0.3   0.1     0.074   3.1e+02      17      27 ..     335     345 ..     315     346 .. 0.71
   3 ?    2.0   0.0     0.014        57       1      19 [.     351     369 ..     351     390 .. 0.65
   4 ?   -2.0   0.0      0.28   1.1e+03       2      15 ..     392     405 ..     391     405 .. 0.84
   5 ?   -3.0   0.0      0.58   2.4e+03       1      11 [.     430     440 ..     430     443 .. 0.79
   6 ?    1.9   0.0     0.016        65       1      13 [.     476     488 ..     476     504 .. 0.90
   7 ?    7.4   0.0   0.00028       1.2       1      21 [.     561     581 ..     561     592 .. 0.89
   8 ?   -0.6   0.0       0.1   4.1e+02       2      14 ..     606     618 ..     605     618 .. 0.90
   9 ?   -0.1   0.2     0.068   2.8e+02      17      28 ..     625     636 ..     624     638 .. 0.87
  10 ?   -1.9   0.0      0.25     1e+03       2      14 ..     651     663 ..     650     663 .. 0.89
  11 ?    0.1   0.0     0.058   2.4e+02       2      10 ..     740     748 ..     739     751 .. 0.85
  12 ?    0.9   0.0     0.031   1.3e+02       2      12 ..     786     796 ..     785     802 .. 0.87

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.072
    TIGR00756   2 tyntlisglc 11 
                  +yn+l+++ c
  MMETSP1061-20121228|29304_1 160 MYNSLLDSWC 169
                  7******998 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.074
    TIGR00756  17 eeAlelfdeMk 27 
                  e+A ++++eM+
  MMETSP1061-20121228|29304_1 335 EHADRILEEMQ 345
                  67888888886 PP

  == domain 3    score: 2.0 bits;  conditional E-value: 0.014
    TIGR00756   1 vtyntlisglckagrveeA 19 
                  vty+++is+ + +g+ ++A
  MMETSP1061-20121228|29304_1 351 VTYSSVISAWSASGMKSHA 369
                  6888888888887774433 PP

  == domain 4    score: -2.0 bits;  conditional E-value: 0.28
    TIGR00756   2 tyntlisglckagr 15 
                  + n+++s+ +k+++
  MMETSP1061-20121228|29304_1 392 VLNSIMSAWVKSKN 405
                  679*****999875 PP

  == domain 5    score: -3.0 bits;  conditional E-value: 0.58
    TIGR00756   1 vtyntlisglc 11 
                  vtynt +++l+
  MMETSP1061-20121228|29304_1 430 VTYNTHLHALS 440
                  79**9888876 PP

  == domain 6    score: 1.9 bits;  conditional E-value: 0.016
    TIGR00756   1 vtyntlisglcka 13 
                  ++yn++i + c++
  MMETSP1061-20121228|29304_1 476 FSYNVVIEAWCRS 488
                  59*********95 PP

  == domain 7    score: 7.4 bits;  conditional E-value: 0.00028
    TIGR00756   1 vtyntlisglckagrveeAle 21 
                  v+y+++i  l+++g+++ A++
  MMETSP1061-20121228|29304_1 561 VSYTSVIVTLARSGEPDAAER 581
                  79***************9986 PP

  == domain 8    score: -0.6 bits;  conditional E-value: 0.1
    TIGR00756   2 tyntlisglckag 14 
                  +yn +i++ +k+g
  MMETSP1061-20121228|29304_1 606 VYNHVIDAWSKSG 618
                  7*******99987 PP

  == domain 9    score: -0.1 bits;  conditional E-value: 0.068
    TIGR00756  17 eeAlelfdeMke 28 
                  ++A  l++eM+e
  MMETSP1061-20121228|29304_1 625 RKADALLKEMEE 636
                  599*******98 PP

  == domain 10    score: -1.9 bits;  conditional E-value: 0.25
    TIGR00756   2 tyntlisglckag 14 
                  tyn ++ + +k+g
  MMETSP1061-20121228|29304_1 651 TYNRVMTSWAKSG 663
                  9******999987 PP

  == domain 11    score: 0.1 bits;  conditional E-value: 0.058
    TIGR00756   2 tyntlisgl 10 
                  tynt++++ 
  MMETSP1061-20121228|29304_1 740 TYNTVLNAA 748
                  9*****985 PP

  == domain 12    score: 0.9 bits;  conditional E-value: 0.031
    TIGR00756   2 tyntlisglck 12 
                  +y+tl++++++
  MMETSP1061-20121228|29304_1 786 SYSTLMKACSN 796
                  7********86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (864 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 3678.66
//
Query:       MMETSP1061-20121228|29305_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-10   37.5   0.4    1.2e-07   28.2   0.0    2.2  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
      2e-10   36.8   1.0    3.1e-09   33.0   0.0    2.3  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
      1e-05   22.0   0.0     0.0032   13.8   0.0    2.3  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
      0.001   15.8   0.0      0.062    9.9   0.0    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
     0.0011   16.0   0.0     0.0062   13.5   0.0    2.0  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
     0.0017   14.5   0.0     0.0025   13.9   0.0    1.1  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
  ------ inclusion threshold ------
      0.025   11.5   0.1      0.054   10.4   0.1    1.5  1  TIGR03158 cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO


Domain annotation for each model (and alignments):
>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   2.1e-10   1.2e-07      21     104 ..      67     164 ..      49     175 .. 0.83
   2 !    7.3   0.0   0.00044      0.26     342     377 ..     540     575 ..     531     589 .. 0.87

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 2.1e-10
    TIGR03817  21 vepdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp..............ratalylaPtkalaadqlravkel 104
                  + p + + +++ G ++p   q + a+ a + e+  + + t sGk+l+y+lP+l+++++++               +t+l +aPt+ la   +r  +++
  MMETSP1061-20121228|29305_1  67 LFPALSSSIDKLGFSTPTPIQSASAKRALDLENLLMIAPTGSGKTLSYMLPALEKIVAQKqqqeetvgvmkeggTNTVLVVAPTRELALQLMRDTTSI 164
                  3477899999*********************************************99995556666777777779*************9988887765 PP

  == domain 2    score: 7.3 bits;  conditional E-value: 0.00044
    TIGR03817 342 GvdisGldavviaGfPGtvaslwqqaGraGrrgqda 377
                  G+ +  +d+v + G P   as+   aGr Gr++  a
  MMETSP1061-20121228|29305_1 540 GLHLEDVDTVFVVGRPSSAASYLHLAGRVGRSSTSA 575
                  7888899************************99877 PP

>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.0   0.0   5.2e-12   3.1e-09      13     153 ..      82     238 ..      75     246 .. 0.74
   2 ?    2.0   0.1     0.012       7.1     315     346 ..     540     571 ..     538     587 .. 0.75

  Alignments for each domain:
  == domain 1    score: 33.0 bits;  conditional E-value: 5.2e-12
    TIGR04121  13 eprafQkevleaaeegesglliapTGaGKTlavflpsliela...akekpk..........kglkvlyitPLkaLakdieraleapieelgleir...velrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklf.kd..lravvvDElHeLl 153
                  +p++ Q +  ++a + e+ l+iapTG+GKTl+ +lp+l +++   +   ++           + +vl ++P + La ++ r  ++ +++l+ + +    ++       +  +  + + +++L+ Tp  l  +ls+ +  + f ++  l++v++DE+  Ll
  MMETSP1061-20121228|29305_1  82 TPTPIQSASAKRALDLENLLMIAPTGSGKTLSYMLPALEKIVaqkQ---QQeetvgvmkegGTNTVLVVAPTRELALQLMRDTTSILSNLDSSGEdagLAVLLAVQGVQIPTPEELNAATVLIGTPKELLYVLSEVRGGSEFlAGdvLSSVILDEVDVLL 238
                  578899***********************************96431...33345666665334568999********99999999999887653311133333333344445566778899999999988888876665555232449999999998776 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.012
    TIGR04121 315 GvDfgdvdlviqvGspkgvaRllQRiGRsnHr 346
                  G+  +dvd+v  vG p ++a  l  +GR + +
  MMETSP1061-20121228|29305_1 540 GLHLEDVDTVFVVGRPSSAASYLHLAGRVGRS 571
                  67789*************99877655554432 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   5.4e-06    0.0032       9      50 ..      78     119 ..      75     124 .. 0.91
   2 !    5.8   0.0    0.0014       0.8     244     330 ..     496     583 ..     484     614 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.4e-06
    TIGR01389   9 FGyeeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaL 50 
                   G+++  + q +  ++ ld +++l + PtG Gk l Y +PaL
  MMETSP1061-20121228|29305_1  78 LGFSTPTPIQSASAKRALDLENLLMIAPTGSGKTLSYMLPAL 119
                  6888888999999999*************************9 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0014
    TIGR01389 244 LeskgiealaYhaGlskkvRaeaqekFleddvk.vvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillyse 330
                  L   giea + h  l  +  a+  e+  ed+    +v       G+   dv  v  +  P +  sy   aGR GR    ae+ ++  +
  MMETSP1061-20121228|29305_1 496 LAHFGIEAKPLHVALGLEANARDEEDDDEDEIPpFLVTFEGSARGLHLEDVDTVFVVGRPSSAASYLHLAGRVGRSSTSAEGDVVVRP 583
                  66778999999985555555555555556665413444444445555556666666689*******************9998776655 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0   0.00011     0.062       7      48 ..      78     119 ..      75     124 .. 0.88
   2 !    3.6   0.0    0.0087       5.1     244     327 ..     494     578 ..     487     589 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00011
    TIGR00614   7 fglesfrpvqlevinavlegrdalvvmatGgGksLCyqlpav 48 
                   g++   p q    + +l  ++ l++ +tG Gk L y lpa+
  MMETSP1061-20121228|29305_1  78 LGFSTPTPIQSASAKRALDLENLLMIAPTGSGKTLSYMLPAL 119
                  56677778899999999999********************97 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.0087
    TIGR00614 244 aeLqkkglaaaaYhagleesarkevqkkflrdeiqvvvatv.afGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecv 327
                  a L + g++a+  h  l  +a ++ +++  +dei   + t      G+   dv  v   + p s  sY   +GR GR    +e  
  MMETSP1061-20121228|29305_1 494 AGLAHFGIEAKPLHVALGLEANARDEEDDDEDEIPPFLVTFeGSARGLHLEDVDTVFVVGRPSSAASYLHLAGRVGRSSTSAEGD 578
                  56788899999999887777777777888899998777666234578888899999999******************99988765 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.1e-05    0.0062       2     151 ..     100     252 ..      99     259 .. 0.68

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.1e-05
    TIGR01587   2 lvieAPtGyGKteaallwalk..............likkqkadkvifalPtratanamyerlkelfgselvlllksassrkikekgdseeleklvklysksnkkvflkpitvctidqvlksvlkevgeaeitlasianSvliiDEvhayeeytkalllallevl 151
                  l++ APtG+GKt   +l al+               +k+   + v+++ Ptr +a  + +   +++++   l  +        e      l+ ++   + + +++ +  + + t++++l+ + +  g  e+    +  S +i+DEv+++  ++ + l ++l+ +
  MMETSP1061-20121228|29305_1 100 LLMIAPTGSGKTLSYMLPALEkivaqkqqqeetvgVMKEGGTNTVLVVAPTRELALQLMRDTTSILSN---LDSS-------GEDAGLAVLLAVQGVQIPTPEELNAATVLIGTPKELLYVLSEVRGGSEFLAGDVL-SSVILDEVDVLLPNPPKQLRTALDSA 252
                  5678********99998888856531121111111122222356777778887777777777777775...1111.......23333444555555566667788899999*********99997788888888776.55789*********999999999865 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.2e-06    0.0025     263     288 ..      96     121 ..      69     133 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.2e-06
    TIGR01407 263 eeekslIeAatGtGKtlgYLLpalyl 288
                  + e++l+ A+tG+GKtl+Y+Lpal  
  MMETSP1061-20121228|29305_1  96 DLENLLMIAPTGSGKTLSYMLPALEK 121
                  56888999***************975 PP

>> TIGR03158  cas3_cyano: CRISPR-associated helicase Cas3, subtype CYANO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   9.3e-05     0.054      13      69 ..      96     171 ..      87     187 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 9.3e-05
    TIGR03158  13 dadvllntAptGaGKtlaalvevl.......seeldt............ialyPtNaLiedqekaikelvdvlkpe 69 
                  d + ll  AptG+GKtl+ ++++l       +++ +t            + + Pt +L+ +  ++  +++ +l+++
  MMETSP1061-20121228|29305_1  96 DLENLLMIAPTGSGKTLSYMLPALekivaqkQQQEETvgvmkeggtntvLVVAPTRELALQLMRDTTSILSNLDSS 171
                  66778999**********9998862222211333344777777777777555588888888877777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.28
# Mc/sec: 2799.08
//
Query:       MMETSP1061-20121228|29308_1  [L=676]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (676 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.26
# Mc/sec: 3431.72
//
Query:       MMETSP1061-20121228|29309_1  [L=395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2172.32
//
Query:       MMETSP1061-20121228|29306_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-11   39.6   0.0      1e-10   39.1   0.0    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   2.5e-14     1e-10      45     175 ..     134     259 ..     123     260 .] 0.86

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 2.5e-14
    TIGR03516  45 iaaeeaaikkiiakdsevkyetskkGfwyaykkkdttetktpetgDlvsfeyeikaldgdviyskeelgpktykvdqedlisGlrdglklmkegeevtfllPsykayGyyGdedkigsnlpikstvtllni 175
                   +  e+ i+++++   + +  ++++G  y     +++++k p   + v+ +y+    dg+v  s  + g +t +    ++i+G ++gl +mkeg ++t+++Ps  ayG  G  d i +  ++k +v l ++
  MMETSP1061-20121228|29306_1 134 KKDGEEYIDNFVDC--NDDAVKTDSGLVYC--SMKEGDGKQPTVANTVEVHYHGTLTDGTVFDSSVDRG-QTISFPLGGVIKGWQEGLAMMKEGGKATLVIPSDLAYGDAGSGDTIPPGATLKFEVELFKV 259
                  55667778888774..44456777887765..667899999************9999999999999987.799999*************************************************999775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1372.69
//
Query:       MMETSP1061-20121228|29310_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2282.92
//
Query:       MMETSP1061-20121228|29307_1  [L=890]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (890 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.36
# Mc/sec: 3263.06
//
Query:       MMETSP1061-20121228|29312_1  [L=167]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (167 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 918.42
//
Query:       MMETSP1061-20121228|29311_1  [L=1740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-63  212.6  13.5    5.6e-32  108.7   2.0    4.6  4  TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
    1.5e-37  127.4   0.0    3.3e-25   86.6   0.0    3.2  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    4.4e-35  119.2   0.0      6e-30  102.3   0.0    3.1  3  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    3.7e-25   86.2   0.0    3.8e-21   73.0   0.0    3.1  3  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    2.3e-24   83.8   0.0    3.8e-22   76.5   0.0    3.0  3  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
    2.7e-24   83.1   0.0    6.4e-23   78.6   0.0    2.9  4  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    7.7e-24   82.0   0.0    3.8e-15   53.4   0.0    3.1  3  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    1.8e-23   80.5   0.0      3e-15   53.3   0.0    3.1  3  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    1.9e-21   73.9   0.0      7e-20   68.7   0.0    2.3  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    3.3e-14   50.2   0.0    1.1e-08   32.1   0.0    3.1  3  TIGR02316 propion_prpE: propionate--CoA ligase
    2.1e-06   24.5   0.0     0.0075   12.8   0.0    2.3  2  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase
    6.3e-06   22.8   0.0    0.00086   15.8   0.0    2.2  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    1.2e-05   20.7   0.0    3.8e-05   19.0   0.0    1.7  2  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
    0.00042   16.4   0.0       0.06    9.3   0.0    2.9  3  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
    0.00051   17.8   0.3       0.54    7.9   0.1    3.2  3  TIGR04008 WcaF: colanic acid biosynthesis acetyltransferase WcaF
    0.00076   16.9   5.5       0.08   10.4   0.2    3.4  3  TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
     0.0011   15.8   0.9       0.04   10.7   0.0    3.1  3  TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
     0.0026   15.2   2.9       0.29    8.5   0.0    3.2  3  TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
     0.0054   14.6   0.3        1.3    6.9   0.2    3.0  3  TIGR01172 cysE: serine O-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR02353  NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.7   2.0   2.6e-34   5.6e-32       6     192 ..     981    1171 ..     975    1179 .. 0.89
   2 !   40.1   0.0   1.5e-13   3.3e-11     537     693 ..    1273    1430 ..    1236    1431 .. 0.75
   3 !    8.1   0.1   0.00071      0.15     238     335 ..    1501    1603 ..    1487    1607 .. 0.81
   4 !   59.4   0.1   2.2e-19   4.7e-17     581     695 .]    1610    1727 ..    1600    1727 .. 0.92

  Alignments for each domain:
  == domain 1    score: 108.7 bits;  conditional E-value: 2.6e-34
    TIGR02353    6 alivlvtlaalqwlaallayenlleald...svsalllravalvfialvgrlviaiaakwllvgrlkpgeyPlwGstylRlWtvkrLveaaptvllsGsplye..lylraLGakiGkevvies.lvpvvtdLltiGagvivekevdllgyrvergrlriGsvrvgddafvGtrsvldidtaiGdraqleasSa 192 
                    li++  ++ +++++ ++ + ++l+++    ++ +++l+ v + f  ++   +i i+ kw ++gr++pg+yP+wGs+ylR+W+v+   ++++  +  G+  y+  ly+r LGa iG+++ i   + +   dL+tiG+ + +e   +++g  ++rg + +G+v v+d a vG+rsv+ + t++ + a+++++ +
  MMETSP1061-20121228|29311_1  981 TLIIFPLYQFTRFFMFFMSLLLILHKVPgerNIYKFILTLVGFHFLWVLITPMIFILIKWTVIGRYRPGRYPIWGSYYLRWWIVDVCRKIIGRGVW-GTNSYSlcLYYRMLGATIGRDANISLqAEISEFDLVTIGDYAKIEY-GTVRGFGLDRGAMILGHVGVDDFASVGVRSVVAPHTKVPTNAHVGPGTS 1171
                   4788889999*********999999987688888889999999999988888999*******************************9999997665.554444228***************98899999************85.579*****************************************99755 PP

  == domain 2    score: 40.1 bits;  conditional E-value: 1.5e-13
    TIGR02353  537 ilvelkwlvvgrykpqekplyspf.vWlnElltklvesvavpellrllrGTpflnl..vlrlLGvkiGrgvyidstd...ltErdlvtigddstlnegsvlQtHlfedrvlkvdtvtigdgatlgpsaivlygavvgedavlgpdslvMkgeevpahtrWeGn 693 
                     +  kw v+g +kp    + ++  + ++ l+ +l       + +  + G  + ++  ++rlLG+kiG++v+  + +     E+dl ++gdd+  +  sv+ t  ++     +++v+   g  +++++ivl+ga++g++avlg +++  +g  +p+ +++ G+
  MMETSP1061-20121228|29311_1 1273 AAICTKWFVIGEFKPGPRDINNQWtLARHFLAASLFC-RENMQQMTDMLGRHYEPVscLYRLLGAKIGKRVFWPGHQpvfSGEFDLLEVGDDVVFGSRSVILTSTLD----TSEKVIFCAGSNISDNTIVLPGAIIGKNAVLGSNTVCPAGRYLPEASIYLGS 1430
                   4456788888888888888865421334444444433.2223344556677776542278***********98876532258*******************998887....5899*******************************************99986 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.00071
    TIGR02353  238 llvvlvllpllavllailvaivlveidal.lgaallg....yaallvltlvalavlivlavlllaavrlllllvlkpgrvavhsrlgyqawtvqqlmdnsral 335 
                   ++ v+ ++plla l  +  +   ++i+    + +l      y  ++   + + a  i+l++++ +  ++  +++  pgr   h  +++q w   q+  + r+l
  MMETSP1061-20121228|29311_1 1501 IFAVVHAFPLLAALHTTGGMLYGWDIRDRyYDDELYNgpqlYFSMFGIFIFTNALRIILCFAIEISAKWSFVGTRTPGRFNWHTSTYCQNWEFYQVLGQVRNL 1603
                   45666778999999999999999998765134455546887777777788889999*************9999999****************99999888876 PP

  == domain 4    score: 59.4 bits;  conditional E-value: 2.2e-19
    TIGR02353  581 rllrGTpflnlvlrlLGvkiGrgv..yidstd..ltErdlvtigddstlnegsvlQtHlfedrvlkvdtvtigdgatlgpsaivlygavvgedavlgpdslvMkgeevpahtrWeGnPa 695 
                    ll+GT ++++ +++LG  iG+++  y  ++d  ++E dlvtigd   +++ s   +Hl   + + + +++i d +tl  ++ +  g+ +++++ l +++l M ge ++a++ W+G+Pa
  MMETSP1061-20121228|29311_1 1610 DLLAGTTYMSMYYSALGSSIGKDCclYPAGADpqMPEPDLVTIGDRCLVDVASI-VSHLNTRGNFELVKIVIEDDVTLRTRSRIQQGVRMEAGSMLLEKTLAMTGEVIDAESVWQGAPA 1727
                   5799*******************966777774449**********999988765.58*************************************************************8 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   1.3e-11   2.8e-09      14     183 ..     111     362 ..     105     379 .. 0.77
   2 !   86.6   0.0   1.5e-27   3.3e-25     248     442 .]     476     685 ..     460     685 .. 0.84

  Alignments for each domain:
  == domain 1    score: 34.2 bits;  conditional E-value: 1.3e-11
    TIGR01923  14 kalkaqsvrkgdvvallaenslelvllllallllgveiallntrLtekelttqlkelkvellltdslle.ekedlqaisldeleaeae............................................................aeevs.............................lsasfsldkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWLlsLPlyHvsGls.ilfrallegatlk 183
                  ++l++++  +g+++al+++n  el+l++la+ +  + +++ln +    el++ l+ +  ++++  +  + e    + ++l+++    +                                                                                              l    + ++ + ++fTSg+tG++K v++ ++     a  +a + ++ ++d     +Pl+Hv+G+   +f  +l++ ++ 
  MMETSP1061-20121228|29311_1 111 PTLHEYGFGRGQRIALVLPNGPELALAILACAHW-ASCVPLNANGAISELQKDLQASRAKMIIGMAGRTgESLSDDLVALQDMA---RalnipfygmipssdevgifqiipmslptkvpidvanqanaayeenimmiqgadsdtedasC---CgtsiaqknrsqmlhnhyshplerlatynfLC--NDHEDEVLVLFTSGTTGNKKLVPHKLGDMIIAAAVIAVSWNLSPDDINCNLMPLFHVGGIVrQVFAPILSAGSVI 362
                  67999**************************987.6899****99999999999999999999888777333333444444444...3344888999999999***9999999999999999999998777777777777666555550...05555555566777777777777854422211..256888999*********************999999999999999999999********6424666666665555 PP

  == domain 2    score: 86.6 bits;  conditional E-value: 1.5e-27
    TIGR01923 248 glpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd.....keghgeilvkganlmkgY......l...ekgelteaveeqGwlktgDlgeldgegfllvldRrddliISGGENiypeeiEkvlkslpevqeavvvpkeDsefGqvPvayikses...eiskakltaylkeklaKyKvPiafekldelpkeasgKilRnkl 442
                  g ++  syGmTE +  + +   +    k++++G+   + ei i +++     +++ g+i v+g+  ++gY      l   +++++ +a  e Gw++tgDlg+ld++g+l++++R +++i  GGE i p e+E+ + ++p +  ++  +++ +   +   ++++ ++     +   l+++l+ekla  K+P+  + +d lpk +++K+lR kl
  MMETSP1061-20121228|29311_1 476 GANVLPSYGMTECM-PISSPPYDYELTKPGTSGVA-VGPEICIFNNNmkampPNKEGNICVRGRPCFRGYgavgavLgggHNHKVPKALGEGGWFNTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILACAAFSAPHDILQEAVGIVLVHKAgerRLDLPMLHTFLQEKLAPAKWPQCLVYMDALPKSHTNKLLRVKL 685
                  5667889*****65.6778888888899**99975.68899998888888888899**************4433331222355677888999***************************************************99999987776655555555444455788899**********************************875 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0    0.0065       1.4      67     108 ..     110     150 ..      76     183 .. 0.77
   2 !    7.6   0.0    0.0013      0.29     195     264 ..     291     360 ..     279     371 .. 0.88
   3 !  102.3   0.0   2.8e-32     6e-30     316     536 ..     458     685 ..     442     687 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0065
    TIGR03208  67 avglarlgvgrgdvvslqlpnrwefvalylacarigavlnpl 108
                     l+  g grg+ ++l lpn+ e++   laca   +   pl
  MMETSP1061-20121228|29311_1 110 GPTLHEYGFGRGQRIALVLPNGPELALAILACAHWAS-CVPL 150
                  5578999**************************8644.3455 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.0013
    TIGR03208 195 ddvtqliytsgttgepkgvmhtantllsnilayaerlelgegdvilmaspmahqtgfmyglmlplvlras 264
                  +d  ++++tsgttg+ k v h    ++      a   +l   d+     p+ h  g +  ++ p++   s
  MMETSP1061-20121228|29311_1 291 EDEVLVLFTSGTTGNKKLVPHKLGDMIIAAAVIAVSWNLSPDDINCNLMPLFHVGGIVRQVFAPILSAGS 360
                  5667899***************999999889999999**********************99999875544 PP

  == domain 3    score: 102.3 bits;  conditional E-value: 2.8e-32
    TIGR03208 316 lcagapipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevkvidadgaklsagevgrllvraasnfggy......lkrphl....navdaegwfdtgdlafldaegyiriagrskdviirggenipvveieallykhpavaqvaivaypderlgeracavvvlktga.sldfaalveflkaqkvalqyiperlvvrdalpatpagkiqkfrl 536
                  + ag  + + l ++ r+++ga+++ ++gmte+  ++    d +  k +++ g+ + g e+ + + + +++++++ g++ vr+   f gy      l   h      a    gwf+tgdl +ld +gy+ i+grsk+vi rgge i  +e+e+ + +hp++   a  + p + l e +  v+v k g   ld + l  fl+ +k+a    p+ lv  dalp++ + k+ + +l
  MMETSP1061-20121228|29311_1 458 NAAGGLL-PSLANELRNTFGANVLPSYGMTECMPISSPPYDYELTKPGTS-GVAV-GPEICIFNNNMKAMPPNKEGNICVRGRPCFRGYgavgavLGGGHNhkvpKALGEGGWFNTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILACAAFSAPHDILQEAVGIVLVHKAGErRLDLPMLHTFLQ-EKLAPAKWPQCLVYMDALPKSHTNKLLRVKL 685
                  4455544.56889999******************9999888888888876.6655.889***************************99944444333333311113455679*************************************************************************97369***9999997.689**********************999887 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.032       6.8      37     106 ..     108     176 ..      79     198 .. 0.75
   2 !    6.4   0.0    0.0025      0.55     163     218 ..     291     346 ..     231     364 .. 0.82
   3 !   73.0   0.0   1.8e-23   3.8e-21     275     514 ..     450     685 ..     442     688 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.032
    TIGR03098  37 alasglkalglkrgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtske 106
                   +  +l+  g  rg+R+a+ l+   e  la++a+++ ++  vp+n     + ++  l+ + +k+++  + 
  MMETSP1061-20121228|29311_1 108 DFGPTLHEYGFGRGQRIALVLPNGPELALAILACAHWAS-CVPLNANGAISELQKDLQASRAKMIIGMAG 176
                  466789999*************************99754.578776666666666666677777766555 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0025
    TIGR03098 163 ddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredDrllavLPlsfDyG 218
                  +d   +l+tsG tG+ k v     +++  a  +a   +l++dD     +Pl    G
  MMETSP1061-20121228|29311_1 291 EDEVLVLFTSGTTGNKKLVPHKLGDMIIAAAVIAVSWNLSPDDINCNLMPLFHVGG 346
                  566789***********9988889*******************9999999855444 PP

  == domain 3    score: 73.0 bits;  conditional E-value: 1.8e-23
    TIGR03098 275 aeslRyltnsGGalpkavlarlRkllpeaklylmYGLteafRstyLdPeevdrrPdsiGkaipnaevlvlredGsecapeeeGelvhrGalvakGYWndpektaerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemiktsGyRvsPteveevllatglvaeavvlgvpdpelGqaivlvvv.esdkeeldkkellkelraelPaymvPakielrealprnanGkiDrkal 514
                   ++lR+++n+ G l  ++ ++lR+++  a++ + YG+te    +  + +    +P+  G a+   e+ + +++ +   p+ eG++  rG    +GY    +          ++  ++  ++     GDl+  De+G+l++ gR+ e+i   G  +sP evee +++ + +  +++++ p++ l +a+ +v+v + +++ ld   l + l+++l     P+++ + +alp++   k+ r  l
  MMETSP1061-20121228|29311_1 450 KRHLRMIANAAGGLLPSLANELRNTFG-ANVLPSYGMTECMPISSPPYDYELTKPGTSGVAVG-PEICIFNNNMKAMPPNKEGNICVRGRPCFRGYGAVGAVLGGGH---NHKVPKALGEGGWFNTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILACAAFSAPHDILQEAVGIVLVhKAGERRLDLPMLHTFLQEKLAPAKWPQCLVYMDALPKSHTNKLLRVKL 685
                  689******9999999999*****996.8999********98877555555589*******97.69******************************76554433333...2222334444555668*************************************************************777664889999*********************************999988765 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.19        41      41     106 ..     107     171 ..      77     177 .. 0.78
   2 ?    2.4   0.0      0.05        11     160     226 ..     290     355 ..     259     390 .. 0.84
   3 !   76.5   0.0   1.8e-24   3.8e-22     277     505 ..     450     685 ..     396     688 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.19
    TIGR02262  41 rrvaaalrrlGvkreervllvlldtvdfpivflG.airaGivpvalntlltaddyaylledsrarvv 106
                  +  +++l++ G  r +r++lvl ++ +  ++ l  a  a  vp+  n  +++ +    l+ sra+++
  MMETSP1061-20121228|29311_1 107 KDFGPTLHEYGFGRGQRIALVLPNGPELALAILAcAHWASCVPLNANGAISELQ--KDLQASRAKMI 171
                  5679999**********************9988626779999998888776655..44777887776 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.05
    TIGR02262 160 addpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlglreddvvfsaaklffayGlGnalifpl 226
                   +d++  l++sG+tG  k v h   ++++ a + a    +l  dd+      lf   G+   ++ p+
  MMETSP1061-20121228|29311_1 290 HEDEVLVLFTSGTTGNKKLVPHKLGDMIIAAAVIAV-SWNLSPDDINCNLMPLFHVGGIVRQVFAPI 355
                  4678899********************999998665.578899999999999999999988888886 PP

  == domain 3    score: 76.5 bits;  conditional E-value: 1.8e-24
    TIGR02262 277 ekrlrlctsaGealpeevGkrwkarfGvdildGvGstellhiflsnlpdd.vkyGtsGkpvpGyrlrlvddggedvadgevGellvsgpssaagy........wnnreks.ratfeGewtrsGdkyvrnddGsytyaGrtddllkvsGiyvspfevesaliaheavleaavvgaededglikpkafvvlrsgadidealeeelkehvkdklapykyprwievvddlpktatGkiqrfkl 505
                  +++lr+ + a   l  ++ ++ ++ fG ++l   G te + i       +  k GtsG+ v G ++ + +++ + +  ++ G++ v g  +  gy         ++++k  +a  eG+w  +Gd  + ++dG+   +Gr+ +++   G  +sp+eve+ +++h+++l  a  +   ++++++    +vl ++a+   +   +l +++++klap k+p+ +  +d lpk+ t k+ r kl
  MMETSP1061-20121228|29311_1 450 KRHLRMIANAAGGLLPSLANELRNTFGANVLPSYGMTECMPISSPPYDYElTKPGTSGVAV-GPEICIFNNNMKAMPPNKEGNICVRGRPCFRGYgavgavlgGGHNHKVpKALGEGGWFNTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILACAAFS--APHDILQEAVGIVLVHKAGERRLDLPMLHTFLQEKLAPAKWPQCLVYMDALPKSHTNKLLRVKL 685
                  678998776666666689*********************998766555441578*****99.889**********************98776666222222223566776145569***************************************************988765..5788999999999999999999999************************************998 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.1   2.5e+02      64     125 ..     112     172 ..      99     196 .. 0.75
   2 ?   -0.1   0.0      0.22        46     159     207 ..     269     316 ..     236     327 .. 0.73
   3 !   78.6   0.0   2.9e-25   6.4e-23     311     520 ..     464     680 ..     450     686 .. 0.85
   4 ?   -1.7   0.0      0.65   1.4e+02     301     326 ..     869     895 ..     820     905 .. 0.66

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.1
    TIGR02275  64 sltklGikkgdtavvqlpniaefyivffallk.lGvaPvlalfshrkselkayaeqieaalli 125
                  +l++ G ++g+++ + lpn  e+ ++++a  + +  +P++a  +   sel+   + + a+++i
  MMETSP1061-20121228|29311_1 112 TLHEYGFGRGQRIALVLPNGPELALAILACAHwASCVPLNANGA--ISELQKDLQASRAKMII 172
                  68899*********************999876256788888655..45555555555555555 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.22
    TIGR02275 159 veeelksaleslaeevkleetkadevaffqlsGGstGtpkliPrthddy 207
                   +++ ++ le la+   l + + dev  +  + G+tG  kl+P    d 
  MMETSP1061-20121228|29311_1 269 LHNHYSHPLERLATYNFLCNDHEDEVLVLF-TSGTTGNKKLVPHKLGDM 316
                  455566777777776556667777887665.5689********877765 PP

  == domain 3    score: 78.6 bits;  conditional E-value: 2.9e-25
    TIGR02275 311 sealarrvpkvlgcklqqvfGmaeGlvnytrlddsdeiivttqGkPispddevrvvdeegepvaeGeaGrlltrGPytirGyyka.....eehnak...afdaeGfyitGdlvkltkeGyivveGrakdqinrGGekiaaeeienlllkhpavidaalvsledellGekscafivvkded..lkavqlrrflreaGlaeyklPdrvelidslPltavGki 520
                    +la ++++++g ++   +Gm+e +   +   d + +   t G  + p  e+ +++++ + +++ ++G + +rG   +rGy          hn k   a+ + G++ tGdl +l+++Gy+ ++Gr+k+ inrGGe i+  e+e+ +++hp++  +a  s + ++l e   +++v k  +  l    l+ fl+e+ la  k P  +  +d+lP++   k+
  MMETSP1061-20121228|29311_1 464 LPSLANELRNTFGANVLPSYGMTECMPISSPPYDYELTKPGTSGVAVGP--EICIFNNNMKAMPPNKEGNICVRGRPCFRGYGAVgavlgGGHNHKvpkALGEGGWFNTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILACAAFSAPHDILQEAVGIVLVHKAGErrLDLPMLHTFLQEK-LAPAKWPQCLVYMDALPKSHTNKL 680
                  5678899999999999999999999988888888887777888877776..8******************************76511222468876222678899**********************************************************************9976545888999***9876.9*****************988886 PP

  == domain 4    score: -1.7 bits;  conditional E-value: 0.65
    TIGR02275 301 kllqvGGakl.sealarrvpkvlgckl 326
                   +  vGG++l + +la rv++  +c++
  MMETSP1061-20121228|29311_1 869 SFFHVGGSSLlASQLASRVRRKYSCEF 895
                  478899988527789999999999986 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0   0.00094       0.2      15      80 ..     112     175 ..     107     196 .. 0.84
   2 !   16.5   0.0   2.8e-06    0.0006     116     197 ..     280     369 ..     231     383 .. 0.74
   3 !   53.4   0.0   1.8e-17   3.8e-15     234     408 ..     450     618 ..     414     619 .. 0.83

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.00094
    TIGR01733  15 aLkeaggvrpgdrVavllersvelvvailavlkaGaayvpldpeyPaeRlaailedakakllltde 80 
                  +L+e  g ++g+r+a++l+ ++el  aila+    a +vpl+++   + l++ l++++ak+++  +
  MMETSP1061-20121228|29311_1 112 TLHE-YGFGRGQRIALVLPNGPELALAILACAHW-ASCVPLNANGAISELQKDLQASRAKMIIGMA 175
                  6776.4599*********************9875.889******9999999999999999999754 PP

  == domain 2    score: 16.5 bits;  conditional E-value: 2.8e-06
    TIGR01733 116 k.......skpddlayviyTSGStGkPKgVlvehrslvnllaslarryelseedrvlqfssl.aFDlsveeiflallaGatlvvvpeeee 197
                          ++++d   v++TSG+tG+ K V  +   ++  +a  a  ++ls++d   ++++l +   +v+++f+++l+ +++++ p+ ++
  MMETSP1061-20121228|29311_1 280 LatynflcNDHEDEVLVLFTSGTTGNKKLVPHKLGDMIIAAAVIAVSWNLSPDDINCNLMPLfHVGGIVRQVFAPILSAGSVICCPSFDA 369
                  133456776789999******************************9****999999999886266899*******999999988876555 PP

  == domain 3    score: 53.4 bits;  conditional E-value: 1.8e-17
    TIGR01733 234 lkslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeeseeepvpiGrplanvrlyvldealrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKirGfRielgEieaalaelpgveeav 408
                  +++lr++  ++  l ++l+++lr++++ ++++  YG TE+  +++   ++ + +   +p + G+++   ++ + +++++ +p++  G ++++G+   rGY    +        +  ++  +  ++ TGDl+ l++dG l + GR+ + +   G  i + E+e+ + ++p++  ++
  MMETSP1061-20121228|29311_1 450 KRHLRMIANAAGGLLPSLANELRNTFG-ANVLPSYGMTECMPISS-PPYDYELT---KPGTSGVAVG-PEICIFNNNMKAMPPNKEGNICVRGRPCFRGYGAVGAVLGGGHNHKVPKALGEGGWFNTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILACA 618
                  569***********************8.89**********99886.44444433...3456788777.8999****************************98877665555444433434558**********************************************997765 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00021     0.045      88     168 ..      94     174 ..      79     193 .. 0.78
   2 !   13.4   0.0   1.7e-05    0.0037     236     304 ..     288     355 ..     253     367 .. 0.72
   3 !   53.3   0.0   1.4e-17     3e-15     479     599 ..     566     683 ..     482     695 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00021
    TIGR02188  88 rkltYaellrevcr.lanvlkelGvkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvita 168
                  r +t++++ + + + +  +l+e+G  +g+r+a+ lp  pe+++a+laca    +  +   G + + l++ ++ ++ak++i  
  MMETSP1061-20121228|29311_1  94 RPITHTRIRDFILKdFGPTLHEYGFGRGQRIALVLPNGPELALAILACAHWASCVPLNANG-AISELQKDLQASRAKMIIGM 174
                  55566666555543377899*****************************987776666555.44557888888888888865 PP

  == domain 2    score: 13.4 bits;  conditional E-value: 1.7e-05
    TIGR02188 236 ldsedplfiLYtsGstGkPkGvlhttgGylllaaltvkyvfdikdedifwCtaDvGWvtGhsYivygPL 304
                   d ed + +L+tsG+tG+ k v h+ g  ++ aa+ + + +++ ++di      +  v G    v++P+
  MMETSP1061-20121228|29311_1 288 NDHEDEVLVLFTSGTTGNKKLVPHKLGDMII-AAAVIAVSWNLSPDDINCNLMPLFHVGGIVRQVFAPI 355
                  4789********************9977655.5566778889999998766666666666666666665 PP

  == domain 3    score: 53.3 bits;  conditional E-value: 1.4e-17
    TIGR02188 479 glyftGDgarrdkdGyiwilGRvDdvinvsGhrlgtaeiesalvsheavaeaavvgvpdeikgeaivafvvlkegveedeeelekelkklvrkeigpiakpdkilvveelPktRsGkimRR 599
                  g + tGD    d+dGy++i+GR  +vin  G  ++  e+e+ +v+h+++  +a+ ++p++i  ea+ + +v k+g++  +      l++ ++++++p   p+ + ++++lPk    k++R 
  MMETSP1061-20121228|29311_1 566 GWFNTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILACAAFSAPHDILQEAVGIVLVHKAGERRLD---LPMLHTFLQEKLAPAKWPQCLVYMDALPKSHTNKLLRV 683
                  4789**********************************************************999988777777766555...47899******************************995 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.5   0.0     0.038       8.3      31     122 ..      77     171 ..      49     182 .. 0.69
   2 !   68.7   0.0   3.3e-22     7e-20     322     540 ..     462     685 ..     442     686 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.5 bits;  conditional E-value: 0.038
    TIGR03205  31 aadygarpal...efrdraityteleala.etaaaallragygkdasvalylgntpdhpinffgalkagarvvhlspldgerals...hklsdsgarll 122
                   + +g r+al   + + r+it+t++  ++ +    +l   g+g+   +al l n p+  +     + a a  +   pl+ + a+s   + l  s a+++
  MMETSP1061-20121228|29311_1  77 VESFGDRNALygvDGKRRPITHTRIRDFIlKDFGPTLHEYGFGRGQRIALVLPNGPELALA----ILACAHWASCVPLNANGAISelqKDLQASRAKMI 171
                  456777777522266889******9887615566788899****************98775....5566667777777776666511134555555555 PP

  == domain 2    score: 68.7 bits;  conditional E-value: 3.3e-22
    TIGR03205 322 aplpvevaklferkvglklksgwgmtetcspgtghple.gpdkpgsiglmlpgieldvvslddpkkvlppgevgelrirgpnvtrgywn........raeesaeafv.gdrfltgdigyvdrdgyfflvdrkkdmiisggfnvypqmieqaiyelpavqevivigipdqyrgeaakafvklregakpfsldelraflagklgkhelpvavelvdelprtsvgklsrhel 540
                    lp  +a+ +    g ++   +gmte c p ++ p +    kpg+ g+ + g   ++  ++++ k++pp + g++ +rg    rgy          ++++  +a+  g+ f tgd+gy+d+dgy+f+  r k++i  gg  + p  +e+ i ++p++     +  p +   ea    +  + g + + l  l +fl+ kl   + p  + ++d lp++   kl r +l
  MMETSP1061-20121228|29311_1 462 GLLP-SLANELRNTFGANVLPSYGMTE-CMPISSPPYDyELTKPGTSGVAV-GP--EICIFNNNMKAMPPNKEGNICVRGRPCFRGYGAvgavlgggHNHKVPKALGeGGWFNTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILACAAFSAPHDILQEAVGIVLVHKAGERRLDLPMLHTFLQEKLAPAKWPQCLVYMDALPKSHTNKLLRVKL 685
                  3344.46677777778888899****9.89999988872468******875.44..45668999***********************7622211111233444454326789***************************************************************************************************************998765 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00028     0.059      95     134 ..     108     147 ..      80     190 .. 0.78
   2 ?    4.3   0.0     0.012       2.6     233     299 ..     292     357 ..     281     375 .. 0.74
   3 !   32.1   0.0   4.9e-11   1.1e-08     475     597 ..     569     684 ..     561     691 .. 0.80

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00028
    TIGR02316  95 alasalralgvrrgdrvliylpmiaeaalallacarigai 134
                   +  +l+  g +rg+r+ + lp+ +e ala+laca   + 
  MMETSP1061-20121228|29311_1 108 DFGPTLHEYGFGRGQRIALVLPNGPELALAILACAHWASC 147
                  567789999**************************87655 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.012
    TIGR02316 233 epsyilytsgttgkpkgvqrdvggyavalaasmdaifgakagdvlfsasdvgwvvghsyivyaplla 299
                  +   +l+tsgttg  k v    g   +a a+ + + ++    d+      +  v g    v+ap+l+
  MMETSP1061-20121228|29311_1 292 DEVLVLFTSGTTGNKKLVPHKLGDMIIAAAV-IAVSWNLSPDDINCNLMPLFHVGGIVRQVFAPILS 357
                  45679******************99888554.55556666666666666666666666677777665 PP

  == domain 3    score: 32.1 bits;  conditional E-value: 4.9e-11
    TIGR02316 475 ssldwgirdedgytfilgrtddvinvaghrlgtreieesvsshaavae.vavvgvkdelkgqvavafailkeadsvedaddahalekelmalvesqlgavarparvyvvaalpktrsgkllrra 597
                   + d g  dedgy fi gr+ +vin  g  +   e+ee +  h+++   +a    +d l+  v +++  ++   +++++         l + ++++l     p  + +++alpk+ + kllr  
  MMETSP1061-20121228|29311_1 569 NTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILAcAAFSAPHDILQEAVGIVL--VH---KAGERRLDL---PMLHTFLQEKLAPAKWPQCLVYMDALPKSHTNKLLRVK 684
                  56688999*************************************9650555667899977666655..44...234433332...34566778899999999999999************965 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00042     0.091      86     162 ..     284     356 ..     266     365 .. 0.82
   2 !   12.8   0.0   3.5e-05    0.0075     286     385 ..     577     680 ..     568     681 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00042
    TIGR02372  86 vdLiadrstetarltfatsGstgtPkPvthswaaLlreaealakalgerpapvravialvPahhlyGflfsvllPea 162
                    L +d++     l++ tsG+tg  k v+h    ++  a+ +a    + p +      l+P  h+ G++  v  P +
  MMETSP1061-20121228|29311_1 284 NFLCNDHE--DEVLVLFTSGTTGNKKLVPHKLGDMIIAAAVIAVSWNLSPDDI--NCNLMPLFHVGGIVRQVFAPIL 356
                  44444444..5678899*****************************9888888..7899********9988887765 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 3.5e-05
    TIGR02372 286 ddervfvieGrldeilqvgGvnvspghvkdvLeaepavealavrldGe.rLk.af.ivvaedadeeelea.eLrataaehLpaparPddlrfgteLPrtaaGkl 385
                  d+++ + i+Gr  e++  gG  +sp +v++ + ++p++ a+a  +  +  L+ a+ iv  + a e  l+   L++  +e+L  ++ P+ l +  +LP++ + kl
  MMETSP1061-20121228|29311_1 577 DEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILACAAFSAPHdILQeAVgIVLVHKAGERRLDLpMLHTFLQEKLAPAKWPQCLVYMDALPKSHTNKL 680
                  5677889**********************************988876645542544677799999999973567778888888888************998886 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.8   0.0    0.0086       1.9     140     160 ..     289     309 ..     219     328 .. 0.71
   2 !   15.8   0.0     4e-06   0.00086     326     502 ..     512     689 ..     460     691 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0086
    TIGR01734 140 keddnyyiiytsGstGkPkGv 160
                  +++d++ +++tsG+tG+ k v
  MMETSP1061-20121228|29311_1 289 DHEDEVLVLFTSGTTGNKKLV 309
                  457899***********9966 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 4e-06
    TIGR01734 326 vnlfivdeeGeklsegekGeivivGdsvskGy.....lnnpekteeaffeaegkrayrtGDagtieddgllfyqGrlDfqiklnGyrieLedieanlkkskyikeavvvPkynkdekveaLiaavvakeedfekelkltkaikkeLkkilmeymiPrkfiykdklpltanGkiDrkalaeev 502
                   ++ i +++ + ++  ++G+i + G    +Gy     +    + +++     +   ++tGD g +++dg+lf+ Gr    i   G  i   ++e+++ +   i  +++      ++  ++ ++ v+ + +  e+ l+l   +   L++ l     P+ ++y+d lp ++  k+ r +l ++ 
  MMETSP1061-20121228|29311_1 512 PEICIFNNNMKAMPPNKEGNICVRGRPCFRGYgavgaVLGGGHNHKVPKALGEGGWFNTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILACAAFSAP--HDILQEAVGIVLVH-KAGERRLDL-PMLHTFLQEKLAPAKWPQCLVYMDALPKSHTNKLLRVKLGQRL 689
                  478899999999999************999994433322344566677777777789**********************************************999998766..66777777766554.455666777.6689999999999999***********9999999999888776 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0       0.4        87     680     726 ..     568     614 ..     567     616 .. 0.92
   2 !   19.0   0.0   1.8e-07   3.8e-05     851     922 ..     848     918 ..     822     943 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.4
    TIGR03443 680 yrtGdlGrylPdGnvecsGraddqvkirGfrielGeidthlsrhPlv 726
                  + tGdlG    dG    +Gr+ + +   G  i   e++ ++ +hP +
  MMETSP1061-20121228|29311_1 568 FNTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSI 614
                  689****9999************999999999999**********76 PP

  == domain 2    score: 19.0 bits;  conditional E-value: 1.8e-07
    TIGR03443 851 keirdlWlevlPnkpatiskddsffdlGGhsilatrlifelrkklvvevplgvifkkPtikafakevdrlkk 922
                  +ei++l  e++       + d sff +GG s+la +l   +r+k+  e + + +f++ t  ++a+ ++r + 
  MMETSP1061-20121228|29311_1 848 REIQELVQELIDLDCL-PAYDSSFFHVGGSSLLASQLASRVRRKYSCEFSGTDVFRHNTCLSMAQHIQRQQG 918
                  5566666666554443.35799*********************************************99764 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   0.00028      0.06     110     172 ..      91     150 ..      75     210 .. 0.76
   2 ?    1.4   0.0     0.065        14     266     291 ..     293     318 ..     277     337 .. 0.84
   3 ?    1.2   0.0     0.075        16     502     617 ..     569     682 ..     563     695 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00028
    TIGR01217 110 kesakvtfeelrrqv.aslaaalralGvkkGdrvagylpnipeavaallatasvGaiwsscspd 172
                   +  ++t+  +r  +   +   l + G ++G r+a +lpn pe   a+la+a     w+sc p 
  MMETSP1061-20121228|29311_1  91 GKRRPITHTRIRDFIlKDFGPTLHEYGFGRGQRIALVLPNGPELALAILACA----HWASCVPL 150
                  4556889999998762569999***************************987....59999994 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.065
    TIGR01217 266 plyilfssGttGvpkaivhsaGGtlv 291
                   + +lf+sGttG  k + h  G +++
  MMETSP1061-20121228|29311_1 293 EVLVLFTSGTTGNKKLVPHKLGDMII 318
                  5789***********99999998877 PP

  == domain 3    score: 1.2 bits;  conditional E-value: 0.075
    TIGR01217 502 ahGdyieltprGgivihGrsdatlnpnGvrlGsaeiynaverldeveeslvigqeqedgeerv.vlfvklasGatldealvkeikdairaglsprhvpskiievagiprtlsGkkve 617
                    Gd   l   G + i Grs   +n++G  +   e+ + + + + +  +   +  ++  +e v +++v+ a    ld  ++   +  ++  l+p + p+ ++ ++ +p++ + k + 
  MMETSP1061-20121228|29311_1 569 NTGDLGYLDEDGYLFITGRSKEVINRGGEIISPLEVEEEIVQHPSILACAAFSAPHDILQEAVgIVLVHKAGERRLDLPML---HTFLQEKLAPAKWPQCLVYMDALPKSHTNKLLR 682
                  579999999********************9999999999998888865544433333222332133455565566654444...344556666666777777777777666666555 PP

>> TIGR04008  WcaF: colanic acid biosynthesis acetyltransferase WcaF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1    0.0025      0.54      45      81 ..    1085    1121 ..    1060    1167 .. 0.85
   2 !    6.0   0.0    0.0097       2.1      44     136 ..    1328    1412 ..    1319    1432 .. 0.71
   3 ?   -2.4   0.0       3.8   8.2e+02      69      84 ..    1647    1662 ..    1619    1730 .. 0.50

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0025
    TIGR04008   45 fllrlfgakigknvvirpsvkitypwkltlgdyawvg 81  
                   +  r++ga ig+++ i    +i+    +t+gdya + 
  MMETSP1061-20121228|29311_1 1085 LYYRMLGATIGRDANISLQAEISEFDLVTIGDYAKIE 1121
                   467*********************999*******875 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.0097
    TIGR04008   44 afllrlfgakigknvvirpsvkitypwkltlgdyawvgddavlytlgeitigahsvisqksylctgshdyaskhfdinatpivigekcwlatd 136 
                   + l rl+gakigk v   p  +  +   +   d   vgdd+v+ +   + + +    s+k  +c+gs   +s+  +i     +ig+++ l ++
  MMETSP1061-20121228|29311_1 1328 SCLYRLLGAKIGKRV-FWPGHQPVFSGEF---DLLEVGDDVVFGS-RSVILTSTLDTSEKVIFCAGSN--ISD-NTIVLPGAIIGKNAVLGSN 1412
                   5789********986.5788887777665...5667999987655.4555667777899999999996..333.3455555566666666555 PP

  == domain 3    score: -2.4 bits;  conditional E-value: 3.8
    TIGR04008   69 pwkltlgdyawvgdda 84  
                   p  +t+gd + v   +
  MMETSP1061-20121228|29311_1 1647 PDLVTIGDRCLVDVAS 1662
                   4444455444443222 PP

>> TIGR03570  NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.2   0.00037      0.08     105     183 ..    1091    1169 ..    1090    1172 .. 0.76
   2 ?    4.4   0.1     0.024       5.2     157     187 ..    1380    1410 ..    1358    1420 .. 0.51
   3 ?    2.7   0.0     0.084        18     118     172 ..    1650    1708 ..    1648    1728 .. 0.68

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00037
    TIGR03570  105 GvvimagavinadvrigdnviintgavveHdceigdfvhiapgatlsGgvkigegvfiGagAtviqgvtIgkgavvGaG 183 
                   G+ i   a i+ +++i ++ ++  g + + +        +  ga + G+v +++ + +G+ ++v ++ ++  +a vG G
  MMETSP1061-20121228|29311_1 1091 GATIGRDANISLQAEISEFDLVTIGDYAKIEYGTVRGFGLDRGAMILGHVGVDDFASVGVRSVVAPHTKVPTNAHVGPG 1169
                   5566666667777777666555555555555555556678899**********************************88 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.024
    TIGR03570  157 gegvfiGagAtviqgvtIgkgavvGaGavVv 187 
                    e+v+  ag+++ ++  +  ga++G  av  
  MMETSP1061-20121228|29311_1 1380 SEKVIFCAGSNISDNTIVLPGAIIGKNAVLG 1410
                   4444444444444444444444444444432 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.084
    TIGR03570  118 vrigdnviintgavveHdceigdf....vhiapgatlsGgvkigegvfiGagAtviqgv 172 
                   v+igd +++   ++v+H ++ g+f      i   +tl  + +i++gv + ag+ ++++ 
  MMETSP1061-20121228|29311_1 1650 VTIGDRCLVDVASIVSHLNTRGNFelvkIVIEDDVTLRTRSRIQQGVRMEAGSMLLEKT 1708
                   78999999999999999998888722222345567777777777777666666666655 PP

>> TIGR01853  lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.11        23     110     159 ..    1111    1164 ..    1087    1176 .. 0.52
   2 !   10.7   0.0   0.00019      0.04     107     151 ..    1373    1417 ..    1336    1441 .. 0.84
   3 ?   -1.1   0.0       0.7   1.5e+02     124     172 ..    1651    1697 ..    1647    1723 .. 0.52

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.11
    TIGR01853  110 eveigpnvviganveiG....envkIgpgvvigddvkigdesviyanvviyeev 159 
                    v+ig+++ i+ ++  G    ++ +I  +v + d  ++g  sv++++  + +++
  MMETSP1061-20121228|29311_1 1111 LVTIGDYAKIEYGTVRGfgldRGAMILGHVGVDDFASVGVRSVVAPHTKVPTNA 1164
                   455555555554444332222444555555555555555555555555554444 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00019
    TIGR01853  107 leeeveigpnvviganveiGenvkIgpgvvigddvkigdesviya 151 
                   l+++ +  + v+ +a+++i +n+++ pg++ig++ ++g+++v  a
  MMETSP1061-20121228|29311_1 1373 LTSTLDTSEKVIFCAGSNISDNTIVLPGAIIGKNAVLGSNTVCPA 1417
                   555556677888999999999999999999999999999988655 PP

  == domain 3    score: -1.1 bits;  conditional E-value: 0.7
    TIGR01853  124 eiGenvkIgpgvvigddvkigdesviyanvviyeevklgknviiqagav 172 
                   +iG+++ +   +++ +  + g+      ++vi ++v+l  + +iq+g++
  MMETSP1061-20121228|29311_1 1651 TIGDRCLVDVASIVSHLNTRGNFEL--VKIVIEDDVTLRTRSRIQQGVR 1697
                   5666666666666655555554221..1233333333333333333332 PP

>> TIGR03532  DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.1      0.53   1.1e+02      97     146 ..    1110    1169 ..    1091    1173 .. 0.61
   2 ?    4.7   0.0      0.02       4.4     115     146 ..    1387    1418 ..    1358    1433 .. 0.73
   3 !    8.5   0.0    0.0013      0.29     160     215 ..    1677    1734 ..    1650    1738 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.53
    TIGR03532   97 dkvaigdnavimmGav....iniGaeiGegtmidmnavlGgraivG......knvhiGaG 146 
                   d v+igd a i  G+v    ++ Ga+i     +d  a +G r++v        n+h+G G
  MMETSP1061-20121228|29311_1 1110 DLVTIGDYAKIEYGTVrgfgLDRGAMILGHVGVDDFASVGVRSVVAphtkvpTNAHVGPG 1169
                   567888888887777733334556776666667777777777665511111156666665 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.02
    TIGR03532  115 iGaeiGegtmidmnavlGgraivGknvhiGaG 146 
                    G++i ++t++  +a++G  a++G n+   aG
  MMETSP1061-20121228|29311_1 1387 AGSNISDNTIVLPGAIIGKNAVLGSNTVCPAG 1418
                   56667777777777777777777777666665 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.0013
    TIGR03532  160 pvvieddvliGanavileGvkvGkGavvaaGaivi..edvpentvvaGvpakvikevd 215 
                    +vieddv + + + i +Gv++ +G+++   ++ +  e +++++v  G+pa+ + + d
  MMETSP1061-20121228|29311_1 1677 KIVIEDDVTLRTRSRIQQGVRMEAGSMLLEKTLAMtgEVIDAESVWQGAPARQVHSYD 1734
                   478***********************99876654311567889999******998876 PP

>> TIGR01172  cysE: serine O-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       3.9   8.5e+02       8      49 ..    1003    1044 ..     999    1047 .. 0.77
   2 !    6.9   0.2    0.0059       1.3     122     154 ..    1130    1164 ..    1088    1169 .. 0.71
   3 ?    3.8   0.0     0.051        11      44     145 ..    1312    1414 ..    1293    1426 .. 0.63

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3.9
    TIGR01172    8 vlerDPaaesalevlllykglhallayrlahalykrklklla 49  
                   +l++ P  +++++ +l++ g+h l++     ++   k+ +++
  MMETSP1061-20121228|29311_1 1003 ILHKVPGERNIYKFILTLVGFHFLWVLITPMIFILIKWTVIG 1044
                   6778899999************99987666666666666655 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0059
    TIGR01172  122 igagakvLGnievgenakiGansvvl..kdvpaea 154 
                   +  ga +LG++ v + a++G  svv   ++vp++a
  MMETSP1061-20121228|29311_1 1130 LDRGAMILGHVGVDDFASVGVRSVVAphTKVPTNA 1164
                   5679*********************7324577665 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.051
    TIGR01172   44 klkllarllselvrvltgvdihPaakigrgvliDhatGvviGet..avigddvsi.yqgvtLGgtgkekgkRhPtvkegvvigagakvLGnievgenakiGansv 145 
                   +++ ++ +l +  + +  +    +akig++v+    + v  Ge    ++gddv    ++v L +t  ++ k      +g  i+ +  vL    +g+na +G+n+v
  MMETSP1061-20121228|29311_1 1312 NMQQMTDMLGRHYEPVSCLYRLLGAKIGKRVFWPGHQPVFSGEFdlLEVGDDVVFgSRSVILTSTLDTSEK--VIFCAGSNISDNTIVLPGAIIGKNAVLGSNTV 1414
                   55566666666666666666666899999999998899999985225788887662356666655543333..23444555666666666666777777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1740 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 1.14u 0.16s 00:00:01.29 Elapsed: 00:00:00.73
# Mc/sec: 3146.04
//
Query:       MMETSP1061-20121228|29314_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.2    6.0   7.4        1.6    6.5   2.0    2.0  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   2.0   0.00039       1.6      61     134 ..      18      91 ..       8     133 .. 0.53
   2 ?    1.8   0.1     0.011        43      42      97 ..     321     374 ..     312     407 .. 0.38

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00039
    TIGR03499  61 seeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae..........eelrkelkalkellekqlselal.e 134
                  + e+e+k++++ ++++++++ +e+           a+a+++a++++++++           +lr ++ +++  l++  s+ +l +
  MMETSP1061-20121228|29314_1  18 EHEHERKNEQQHNSNHNQKNLDES-----------ANANANANPNNPNNAntrfvtgdnlHKLRHQVLEMRLELREARSRNDLgR 91 
                  222222222222222222222221...........11122222222222223466677778899999999988888877654443 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.011
    TIGR03499  42 kkkvevvaaideeesasaaseeeeakkaleeaepkklskaeekeekekeaeekaae 97 
                  +++ e+v  +  +es+++++++ ++k ++e ++  ++++ + + +++++++++a++
  MMETSP1061-20121228|29314_1 321 RPTPELVLKLIRDESKKETTAATTTKTKTEVNS--NYDTDSPSSSSSSSSSSPARS 374
                  555555555555552222222222222222222..222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1956.27
//
Query:       MMETSP1061-20121228|29313_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-25   86.8   9.4    6.8e-25   85.7   6.5    1.5  1  TIGR00659 TIGR00659: TIGR00659 family protein
  ------ inclusion threshold ------
        1.1    6.8   9.5       0.38    8.3   0.6    2.8  3  TIGR02796 tolQ: protein TolQ


Domain annotation for each model (and alignments):
>> TIGR00659  TIGR00659: TIGR00659 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.7   6.5   3.3e-28   6.8e-25      59     224 ..     377     547 ..     372     549 .. 0.84

  Alignments for each domain:
  == domain 1    score: 85.7 bits;  conditional E-value: 3.3e-28
    TIGR00659  59 evlndlLqpavvalaiPLYkqlkvikkyakeiiltvvvgsvvailsgtllall.lgaapelvasllPksvttpiamevsekigGiPa...vtavlviltgllGavfgplllkklrvkdkvarGlalGtsshalGtariieldelaGavsslslvLagiit..sliaPflfkl 224
                  ++l +lL+pav++lai +Y++   i+++  +i ++v v+s+  ++ ++ +++l + + p +  +ll + +t p+am++++ +g       ++  lv++tgl Ga fg   l++ ++k+ varG+++G+++h+lGta  +++ + a  +s++s++L++     ++ +P++ k+
  MMETSP1061-20121228|29313_1 377 DILLFLLGPAVMSLAISMYDKRDLIRENFAQIATAVSVSSLGGLFGTAWMVRLiALMQPSFRVALLSRNITSPLAMAIAGLLGASAStvsLAVALVVVTGLFGANFGAASLNAAGIKNPVARGMGIGAAAHGLGTAAFVDE-KDAFPFSAISMALTATACtcLVSVPAIKKI 547
                  67889****************************************999776551567899999******************9975431114556899**************************************987765.56789********87654013446776665 PP

>> TIGR02796  tolQ: protein TolQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.21   4.3e+02      10      31 ..     322     343 ..     319     350 .. 0.85
   2 ?    8.3   0.6   0.00018      0.38     110     145 ..     392     427 ..     385     474 .. 0.69
   3 ?    2.9   0.3    0.0082        17     168     186 ..     526     544 ..     522     547 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.21
    TIGR02796  10 slvvklvlliLllaSiisWaii 31 
                  ++ vk v+  L+++  ++W+++
  MMETSP1061-20121228|29313_1 322 NPKVKKVVHPLVTCTALTWTVM 343
                  5679999999*********997 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.00018
    TIGR02796 110 valareleklesklsfLatvgsvaPyiGLfGTVwgI 145
                  +++ +  + + ++++ +at  sv+   GLfGT w +
  MMETSP1061-20121228|29313_1 392 ISMYDKRDLIRENFAQIATAVSVSSLGGLFGTAWMV 427
                  455566777999**********************54 PP

  == domain 3    score: 2.9 bits;  conditional E-value: 0.0082
    TIGR02796 168 iaEALiaTAigLfaAIPAv 186
                  i+ AL aTA   ++ +PA+
  MMETSP1061-20121228|29313_1 526 ISMALTATACTCLVSVPAI 544
                  999**************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2827.61
//
Query:       MMETSP1061-20121228|29317_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 402.91
//
Query:       MMETSP1061-20121228|29315_1  [L=952]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-76  253.4   0.0    1.1e-71  239.6   0.0    2.3  2  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    0.00011   20.5   0.9      0.011   14.0   0.0    2.5  2  TIGR02267 TIGR02267: Myxococcus xanthus paralogous family TIGR02267
    0.00016   19.0   0.0    0.00054   17.3   0.0    1.8  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  239.6   0.0   7.9e-75   1.1e-71      41     347 ..     398     718 ..     360     737 .. 0.86
   2 !   11.3   0.0   1.5e-05      0.02     387     427 ..     777     817 ..     756     824 .. 0.87

  Alignments for each domain:
  == domain 1    score: 239.6 bits;  conditional E-value: 7.9e-75
    TIGR01982  41 eearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlvegkeVavKvlRPgiekkieadikllellaklvek........llpeakrlrptevvkefektlkeEldlrlEaanaselkenfknd..kklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakd....gkiialDfGivgrlseeerrylaeillgfl.erdykrvaevhleagyvpsdtdlae 347
                   +a++++lge +++ l +lGP+fiK+GQ+ stR D++p+e++e+L+lLqd+vppf++++a ++ie+elgkp+++++++fe+k lA AS++Qvh A+ + + e avKv+R  +++ +e d+  l++la +++         l+++  + + + v +e ++ l eE+d++ E +n  +++enf++   k+++vP+vy e+ s++vlt+e+  g++++d+ek+ e Gld+  ++++ +e fl+q  r+gfFH D+HpGNi v+k     +++i+ DfG++ +  + er+ +++ ++++    + k   + + ++g++++  dl++
  MMETSP1061-20121228|29315_1 398 FSAERSKLGEEITQNLLRLGPTFIKVGQLFSTRIDIVPKEYIEQLKLLQDNVPPFSGDTAVEIIERELGKPIDQIYDTFEKKALAGASLGQVHLAT-KGDLEFAVKVQRRYLKDLFEVDLGQLRQLAVFADAidmtseggLFDQNTQRDWVSVYEENKRLLYEEIDYENELRNGVKFRENFNKPkwKHIRVPNVYPEYSSSQVLTMEYAPGVKITDMEKIAELGLDPIDISTKSAEAFLEQLCRHGFFHCDPHPGNISVEKGpdgkARLIFYDFGMMDSFGPVERKGFVDFMFAVYyDANVKDACDALERMGMLRTGPDLDR 718
                  34558999**************************************************************************************95.67899******************99999998877522222222456777889999*****************************9762269************************************************************************977777899*************9999998888876514677778888888887777766665 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 1.5e-05
    TIGR01982 387 vqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklik 427
                   +p  +++ ++++t++G+g++l+p+ dl ++  p++k+li 
  MMETSP1061-20121228|29315_1 777 FPPTWTFVLRAFFTLDGIGKTLNPKYDLTRIMVPYLKELID 817
                  678889999****************************9986 PP

>> TIGR02267  TIGR02267: Myxococcus xanthus paralogous family TIGR02267
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   8.2e-06     0.011      52      86 ..     134     168 ..     124     203 .. 0.86
   2 !    4.4   0.1    0.0075        10      32      85 ..     826     879 ..     814     885 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 8.2e-06
    TIGR02267  52 lasdvsalallkeisrrireGsrrlsralteavrr 86 
                     +vs ++l+ eis+ri++Gs+ +++ +t++   
  MMETSP1061-20121228|29315_1 134 TDVNVSMVELMDEISKRISDGSTEIMEDITKVLDE 168
                  44568899*******************99998755 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.0075
    TIGR02267  32 alllrsarevaiseadvtaalasdvsalallkeisrrireGsrrl.sralteavr 85 
                    llr  + v+++++d+++ +++   + a ++++ +r+ +G  +l +ral+  ++
  MMETSP1061-20121228|29315_1 826 TTLLRIGKRVGLRPEDINQFITQPRRT-AKVEDVVDRLEKGDFKLrVRALEVERQ 879
                  5689999************99877665.55799********99985677765554 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.1      0.43   5.9e+02     143     187 ..     123     167 ..     120     204 .. 0.78
   2 !   17.3   0.0   3.9e-07   0.00054      56     143 ..     582     680 ..     550     699 .. 0.82

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.43
    TIGR03724 143 edkavDlhvlkrslestheelaeelieaflegYkeeveeekavle 187
                  e  a+Dl  +   ++  + el++e+ +++ +g +e++e+ ++vl+
  MMETSP1061-20121228|29315_1 123 ETDAIDLGEIATDVNVSMVELMDEISKRISDGSTEIMEDITKVLD 167
                  566778877777777777777888888888888777777766665 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 3.9e-07
    TIGR03724  56 kagvntPvvydvdpeekkivmeyiegkklkdlleekel.....ellke.vGelvgklHkagivhgDlttsNiivk.....ddklyliDfGLgkkskeve 143
                   + +++P vy    +++ ++mey  g k+ d+ +  el     ++ ++ +   + +l ++g+ h D+++ Ni v+     + +l++ DfG+      ve
  MMETSP1061-20121228|29315_1 582 WKHIRVPNVYPEYSSSQVLTMEYAPGVKITDMEKIAELgldpiDISTKsAEAFLEQLCRHGFFHCDPHPGNISVEkgpdgKARLIFYDFGMMDSFGPVE 680
                  56799***********************9998777666778996655505567899******************7677667789999***977655555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (952 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.44u 0.16s 00:00:00.60 Elapsed: 00:00:00.40
# Mc/sec: 3141.34
//
Query:       MMETSP1061-20121228|29321_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      6e-14   49.7   0.0    7.9e-14   49.3   0.0    1.2  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.9e-10   37.8   0.0    2.9e-10   37.8   0.0    1.7  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    7.6e-08   29.1   0.0    1.1e-07   28.6   0.0    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.8e-07   28.2   0.5      3e-07   27.4   0.4    1.3  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    5.3e-05   20.0   0.0    6.4e-05   19.7   0.0    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    0.00014   19.4   0.0    0.00019   18.9   0.0    1.3  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    0.00029   18.4   0.0    0.00053   17.5   0.0    1.4  1  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.3   0.0   1.3e-16   7.9e-14     212     296 ..     113     196 ..      83     223 .. 0.91

  Alignments for each domain:
  == domain 1    score: 49.3 bits;  conditional E-value: 1.3e-16
    TIGR01622 212 dipnsiadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvgla 296
                  +  +      L+vG l +++tE +L    e+FG++++++l  D+e+ +s+G GF+++++ e  k+A      + + GRei v   
  MMETSP1061-20121228|29321_1 113 EFEGMNCYNTLFVGRLAYEVTERKLLREMEAFGPVKDIKLVTDEEG-KSRGIGFVEYENEEDMKRAYRGADRMKIEGREIVVDVE 196
                  5555666788*********************************998.*********************************99765 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.7      0.36   2.1e+02     420     507 ..      52      91 ..       3     119 .. 0.36
   2 !   37.8   0.0   4.9e-13   2.9e-10      90     162 ..     122     194 ..     107     199 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 0.36
    TIGR01628 420 sqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnrnrnvlgnmnkkqqnaaskanqanvkaqpqaqsknqmqqvvqd 507
                  +++ +f+++ ++ +t+ p++                       +   +++                           +k++m+  +++
  MMETSP1061-20121228|29321_1  52 PTQGVFQFMDKFETTTAPKRIV---------------------QPTPKSM---------------------------KKAKMEARTKQ 91 
                  1222222222222222222111.....................1111111...........................11111111111 PP

  == domain 2    score: 37.8 bits;  conditional E-value: 4.9e-13
    TIGR01628  90 NifvKnLdksidnkaLfdtFskfGnilsckvatdeeGkSkgYgfvhfedeesAkeAieklNgvllndkevyvg 162
                   +fv +L  +++++ L    ++fG +  +k++tdeeGkS+g gfv++e+ee  k A      + ++ +e++v+
  MMETSP1061-20121228|29321_1 122 TLFVGRLAYEVTERKLLREMEAFGPVKDIKLVTDEEGKSRGIGFVEYENEEDMKRAYRGADRMKIEGREIVVD 194
                  4799999999999999999999***************************999999999999999999998875 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.8e-10   1.1e-07     293     370 ..     117     193 ..      76     199 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.8e-10
    TIGR01642 293 ldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnv 370
                  ++  + l++g L +++++ ++   +e FG++k  +l+ d ++G+s+G +F+ey++  + + A  + + +k+ ++ + v
  MMETSP1061-20121228|29321_1 117 MNCYNTLFVGRLAYEVTERKLLREMEAFGPVKDIKLVTD-EEGKSRGIGFVEYENEEDMKRAYRGADRMKIEGREIVV 193
                  566789***************999**************9.57***********************9999998877655 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.4   5.1e-10     3e-07      50     125 ..     114     187 ..      71     196 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 5.1e-10
    TIGR01648  50 yegaqPerGcevfvGkiPrdlyedelvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeir 125
                  +eg++      +fvG++  ++ e  l+  +e  G++ +++l+ d +Gk rG  fv + n e+ k+a +  +   i 
  MMETSP1061-20121228|29321_1 114 FEGMNCY--NTLFVGRLAYEVTERKLLREMEAFGPVKDIKLVTDEEGKSRGIGFVEYENEEDMKRAYRGADRMKIE 187
                  4444332..368********************************************************99988874 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.1e-07   6.4e-05      63     179 ..      73     194 ..      15     209 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.1e-07
    TIGR01645  63 iqkakkameqsikqvllkqtlahqkqqlenqqrqvqrq.....qalaimsrv.vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafve.evPeaallaleqmngallGGrnlkvg 179
                  +q + k+m+++  +   kq ++ q++ + +  r+ qr+     + +     + vG + +e+ e  l r ++ fGP+k i++  d   +k +g  fve e  e  + a    + + + Gr++ v+
  MMETSP1061-20121228|29321_1  73 VQPTPKSMKKAKMEARTKQ-VTDQRKSMIDEYRKFQRDcggefEGMNCYNTLfVGRLAYEVTERKLLREMEAFGPVKDIKLVTDE-EGKSRGIGFVEyENEEDMKRAYRGADRMKIEGREIVVD 194
                  5555566666555555666.55666665555555555522111233344444599999999999999999999999999999997.57889999999999999999999988888999998876 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   3.3e-07   0.00019       6      78 ..     123     194 ..      55     200 .. 0.77

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 3.3e-07
    TIGR01661   6 livnylPqtmtqeeirslftsiGeiescklvrdkvtGqslGyGfvnyvreedaekavnslnGlrlqnktikvs 78 
                  l v  l  ++t+  +   + ++G +  +klv d  +G+s G Gfv+y +eed ++a    + +++  + i v 
  MMETSP1061-20121228|29321_1 123 LFVGRLAYEVTERKLLREMEAFGPVKDIKLVTDE-EGKSRGIGFVEYENEEDMKRAYRGADRMKIEGREIVVD 194
                  4455555556666655556677777888888775.67888888888888888887777766666666666665 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   9.1e-07   0.00053     103     181 ..     116     193 ..      95     200 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 9.1e-07
    TIGR01659 103 trasgtnlivnylpqdmtdrelyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvrnkrlkv 181
                  + +    l v  l  ++t+r+l   + + gp+   +++ d   g s g +fv++  e d +ra +  + + +  + + v
  MMETSP1061-20121228|29321_1 116 GMNCYNTLFVGRLAYEVTERKLLREMEAFGPVKDIKLVTDE-EGKSRGIGFVEYENEEDMKRAYRGADRMKIEGREIVV 193
                  44555569999****************************95.79*******************9988777776666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1198.32
//
Query:       MMETSP1061-20121228|29319_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00093   17.3   0.0     0.0018   16.4   0.0    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
  ------ inclusion threshold ------
      0.026   12.6   0.0       0.06   11.4   0.0    1.6  1  TIGR01068 thioredoxin: thioredoxin


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   8.8e-07    0.0018       5      82 ..     121     204 ..     114     215 .. 0.74

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 8.8e-07
    TIGR01126   5 nfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdatae........kelaskfkvsgfPtlkffkkgk 82 
                  nf+   ++++k v+++f +P C  C+ l  +++ l ++ k +   v+ a++   ++        + ++s+++v+  P ++f+ +g 
  MMETSP1061-20121228|29319_1 121 NFKA--AHSDKLVFLKFSSPICAACRMLKHKFQTLHRSPKFAGAPVVFADIVISNNkkvpdpfrDYVTSQLQVHRVPSIHFYAEGG 204
                  4443..34689************************999999999999999988887222222222345666777777777776665 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.9e-05      0.06      10      60 ..     124     177 ..     114     211 .. 0.65

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.9e-05
    TIGR01068  10 vassdklvlvDfwAeWCgpCkmlaPvleelake...leekvkvvKlnvdeeqei 60 
                   a+sdklv + f  + C +C+ml   ++ l ++       v ++ + + +++++
  MMETSP1061-20121228|29319_1 124 AAHSDKLVFLKFSSPICAACRMLKHKFQTLHRSpkfAGAPVVFADIVISNNKKV 177
                  456789******************999988765111334567777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1355.09
//
Query:       MMETSP1061-20121228|29320_1  [L=962]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1274.0   0.0          0 1273.7   0.0    1.0  1  TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase
    8.6e-57  190.8   0.1    5.2e-41  138.6   0.2    4.8  4  TIGR01418 PEP_synth: phosphoenolpyruvate synthase
    3.5e-39  132.5   0.0    1.1e-27   94.5   0.0    2.5  2  TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase


Domain annotation for each model (and alignments):
>> TIGR01828  pyru_phos_dikin: pyruvate, phosphate dikinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1273.7   0.0         0         0      12     865 .]      90     957 ..      79     957 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1273.7 bits;  conditional E-value: 0
    TIGR01828  12 kelkellGgkGanlaemtklglpvPqGftitteaCkeylke...gkklpeelaeevkealklleektgkkfgdeenpllvsvrsGaavsmPGmmdtvlnlGlndeavkglakltgnerfaydsyrrliqmfgdvvleipkelfekaleelkkekdvkldteltaedlkeliekykkvveeakgkefpqdpkeqlelaikavfdsWknkravvyrrlnkipedlgtavniqsmvfGnmGedsgtGvaftrnPstGekklfgeflinaqGedvvaGirtpeelkel.aempevykelleiaeklekhyrdlqdieftiergklyllqtrtgkrtakaavriavdlveeglitkeeailrvepesldqllhprldesakk....evlakglpasPGaavGkvvfsaeeavelaekgkkvilvreetspedieGmavaegiltarGGmtshaavvargmGkccvsGaeelkvdeekktlkig.....dkelkeGdiisidGstGevylGevkliepevsedfeellewadkvrklkvranadtpedakkalkfGaeGiGlcrtehmffdeerikavrelilaeseeerkaalekllplqkedfkelfkvmegkpvtirlldPPlheflPeteee..vkklaealekeaekilkkveeleevnPmlGhrGvrlgvtyPeiyemqvraileaavevkkegievkpeimiPlvaekeelkilkeeveevaeeveeekgvkleyeiGtmieipraaltadkiaeeadffsfGtndltqmtfgfsrddaekflekylekkilekdPfesldqeGvGelirlavekgrktrpnlkvGiCGehgGdPesiefl.hkigldyvscspyrvPiarlaaaqaai 865
                  ++ k +lGgkGanlaem++lgl+vP+Gftitte+C +y  +   +k+lp+ l+ee+ ++++++ee++  +fg+ enpll+svrsGaa+smPGmmdtvlnlG+nde+v+glak+t+n rfa+dsyrr+++mfg+vvleip+++fe+ l+++k ek+v++d++l aedl+el+ ++k v+e+++  +fpqd +eql+l+i avf+ W+ +ra++yr++++i + lgtavn+q+mvfGnmG++sgtGv+f r+P+ G  +lfgeflinaqGedvvaG+rtp+++ e+   mpevy+e+++ +++le+ + d+qdiefti++gkl++lqtr+gkr ++aav+iavdlv egli k+eai++v pe+ldqllhpr+ + + k    +v+++glpasPGaavG++ +s e+ ve +ekg   i+vr etsp+d+eGm++aegiltarGGmtshaavvarg+Gk+cv+G+ +l+vde + +++ +     +k+++eGd+is++G +Gev+ G+++++ p++s+++++++ew d++r++ v +nadtp dak+a+k+Ga+GiGlcr+ehmff+ eri++vr+lil +  e+ kaale+ll++q+ed++++f+ m+g+pvt+rlldPPlheflP+ +ee  +++ ae+l+ + ek++++ve++eevnPmlG+rG+rlg+t P i+emq+raileaa++  + g+++kp+im+Plv++ ee++++k+ +++vae+v+eekg + ey+iGtmieipraalta++iaeea+ffsfG ndltqmtfg+srdd+++f+++y+ k+il+ dPf++ld eGvG+li+++ve+grk+rpnlk+G+CGehgGdP s++f+ ++ gl yvscsp+rvPiarlaaaqa++
  MMETSP1061-20121228|29320_1  90 TSAKRILGGKGANLAEMSELGLSVPPGFTITTECCDRYCFDaewNKSLPKSLWEEIVHSIDAVEEEMRSQFGSPENPLLLSVRSGAAISMPGMMDTVLNLGMNDEVVEGLAKKTENPRFAWDSYRRFLEMFGNVVLEIPRSHFEDELDDIKYEKGVNEDSDLSAEDLQELVARFKDVYENMD-LSFPQDVYEQLRLSIGAVFNGWMGPRAIKYREVENIRDLLGTAVNVQAMVFGNMGDTSGTGVCFSRDPNIGTPELFGEFLINAQGEDVVAGVRTPRPIAEMkDVMPEVYEEFVKNTKILEEKFGDMQDIEFTIQEGKLFMLQTRNGKRGGEAAVKIAVDLVGEGLIGKDEAITKVLPEHLDQLLHPRFPDVELKeykdSVVSRGLPASPGAAVGRIAMSNEKVVENKEKGIPSIMVRDETSPDDVEGMFAAEGILTARGGMTSHAAVVARGWGKPCVCGCTSLSVDEGSGKITFTmedgsQKTFEEGDFISLNGQSGEVLEGSQTVAPPAISGNLKTFMEWVDDARDIDVLTNADTPADAKEARKNGANGIGLCRSEHMFFKPERIAKVRQLILGTA-EQEKAALEELLKFQREDYEGIFTEMDGLPVTVRLLDPPLHEFLPSLKEEsvLADCAEQLGISVEKLKENVEAMEEVNPMLGLRGCRLGITRPSIIEMQTRAILEAALNAIDAGVDAKPDIMVPLVGKIEEFRNQKALIQSVAEKVFEEKGKSCEYKIGTMIEIPRAALTAHEIAEEAEFFSFGSNDLTQMTFGYSRDDVGSFVPDYMSKGILQDDPFVTLDTEGVGQLIKMTVERGRKVRPNLKIGVCGEHGGDPRSVHFFsNEAGLTYVSCSPFRVPIARLAAAQASV 957
                  57899*********************************866223689***********************************************************************************************************************************9998.77***************************************************************************************************999************************************************************************************875544345599**************************************************************************************98776554322444689*******************************************************************************************865.66789***************************************9865512688999**********************************************************************************************************************************************************************************************************984579*********************975 PP

>> TIGR01418  PEP_synth: phosphoenolpyruvate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.1e-07   0.00015      14      78 ..      94     154 ..      86     162 .. 0.88
   2 !   20.6   0.0   1.8e-08   2.5e-05     119     230 ..     249     367 ..     229     378 .. 0.68
   3 !    5.6   0.0   0.00063      0.86     291     327 ..     381     415 ..     370     428 .. 0.90
   4 !  138.6   0.2   3.8e-44   5.2e-41     347     772 ..     465     945 ..     457     956 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.1e-07
    TIGR01418  14 elvGGknaslGelikelseagvkvPegfvvtaeayrefleeagieekirelleeldvedveelek 78 
                   + GGk+a+l e+ +    +g++vP+gf +t+e   ++  +a+ ++ + + l e  v+ ++++e+
  MMETSP1061-20121228|29320_1  94 RILGGKGANLAEMSE----LGLSVPPGFTITTECCDRYCFDAEWNKSLPKSLWEEIVHSIDAVEE 154
                  689**********99....*****************************99999999988887776 PP

  == domain 2    score: 20.6 bits;  conditional E-value: 1.8e-08
    TIGR01418 119 ssataeDlpdasfaGqqetyLnvkge..eevlekvkkvfasLft....draisYreskgfdhekvalavvvqkmvrsdla...ssGvmftidtetGekd...avliesayGLGeavvsGavtPD 230
                  s   aeDl++   a  ++ y n+     ++v e+++   +++f+     rai+Yre +++++  +  av vq mv  +++    +Gv f+ d++ G+ +   + li++    Ge vv G  tP 
  MMETSP1061-20121228|29320_1 249 SDLSAEDLQEL-VARFKDVYENMDLSfpQDVYEQLRLSIGAVFNgwmgPRAIKYREVENIRDL-LGTAVNVQAMVFGNMGdtsGTGVCFSRDPNIGTPElfgEFLINA---QGEDVVAGVRTPR 367
                  55667777664.4556666666543222555565555555555422228***********986.789********87765211579**********986222455665...5999999998885 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.00063
    TIGR01418 291 leLaklavkieehysrPmDieWakdgeeeeifivqar 327
                  +e +k +  +ee ++  +Die++++  e+++f++q+r
  MMETSP1061-20121228|29320_1 381 EEFVKNTKILEEKFGDMQDIEFTIQ--EGKLFMLQTR 415
                  678999999***************9..9*******99 PP

  == domain 4    score: 138.6 bits;  conditional E-value: 3.8e-44
    TIGR01418 347 ke.kgkvlvkGlavsskiasGkvkvildlkeldkleeG..dilvtdmtdPDwePvmkkasaivtdeGGrtshaaivarelGiPavvGtg.........datkklkdgeevtvs.....caegdeGvvyeg.......kleeeveevelealpetatkilmnvgnPekaerfaelpadGvGLariefiisnvikahPlalleledlkeeekaeieeliaG............ekkelfvdklaegiakvaaafyPkpvvvrlsDfksneyrkliGGekye.peeenPmlGfrGvsrylseeyeeafrlevkalkkvr.e..emGltn.vkvmiPfvrtveevkk...vleileeeglkkgkn..glevyvmvevPsnvlladefaklvDgfsiGsnDltqltLgvDrds..elvakl..........fde.rneavlkliekaikaakek..gkkvsiCGqapsdypelvefLveeGidsislnpDav 772
                  ke k++v+ +Gl++s++ a G++ + +  k +++ e+G   i+v d t PD +  m  a +i+t +GG+tshaa+var  G P v G++         + t +++dg++ t +     + +g++G v eg        ++ +++     +    ++++l n  +P  a+++ + +a+G+GL r e++  +  ++  ++ l l  + e+eka +eel++             +   + v  l   +++    +  + v+    +      +kl+   + e  ee nPmlG rG +  + +      ++  +a+     +  + G++    +m+P+v ++ee ++    ++ ++e+ ++++ +  + ++  m+e+P ++l a e+a++ ++fs+GsnDltq+t g  rd+  ++v +           f     e+v +li+++++  ++   + k+++CG  + d   +  f  e+G++ +s  p  v
  MMETSP1061-20121228|29320_1 465 KEyKDSVVSRGLPASPGAAVGRIAMSN-EKVVENKEKGipSIMVRDETSPDDVEGMFAAEGILTARGGMTSHAAVVARGWGKPCVCGCTslsvdegsgKITFTMEDGSQKTFEegdfiSLNGQSGEVLEGsqtvappAISGNLKTFMEWVDDARDIDVLTNADTPADAKEARKNGANGIGLCRSEHMFFKPERIAKVRQLIL-GTAEQEKAALEELLKFqredyegiftemDGLPVTVRLLDPPLHEFLPSLKEESVLADCAEQLGISVEKLKE--NVEaMEEVNPMLGLRGCRLGITR--PSIIEMQTRAILEAAlNaiDAGVDAkPDIMVPLVGKIEEFRNqkaLIQSVAEKVFEEKGKscEYKIGTMIEIPRAALTAHEIAEEAEFFSFGSNDLTQMTFGYSRDDvgSFVPDYmskgilqddpFVTlDTEGVGQLIKMTVERGRKVrpNLKIGVCGEHGGDPRSVHFFSNEAGLTYVSCSPFRV 945
                  333679***************987644.3444556666558*********************************************9862211111114566677776666542222234567777777776655544444444555556667889*******************************998766655544444.46777888999998662222222222222223333333334444444444444444444444444444443..34536788*********999988..7788888888765431122789875258*******999976511145556666665543312578999*************************************964445554334445433343332468999********99975337899********888888888899*****9988666 PP

>> TIGR01417  PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   7.4e-13     1e-09     176     306 ..     523     657 ..     495     665 .. 0.74
   2 !   94.5   0.0   8.3e-31   1.1e-27     345     532 ..     739     948 ..     725     960 .. 0.76

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 7.4e-13
    TIGR01417 176 kGFlteeGgktsHaailarsleiPavvgtkaetsqvkngdtvii.dgekgevivnpsseeikkyeekk...eavseekaelaklkdkdaktkdgtkvelaanigtvkdlesvereggegiGLfRtEFlymssdql 306
                   G lt+ Gg tsHaa++ar  + P v g ++ +     g+     +  + +   +    +++    +    +++++  a+  +lk       d   + + +n  t+ d + + ++g++giGL R+E ++++ +++
  MMETSP1061-20121228|29320_1 523 EGILTARGGMTSHAAVVARGWGKPCVCGCTSLSVDEGSGKITFTmEDGSQKTFEEGDFISLNGQSGEVlegSQTVAPPAISGNLKTFMEWVDDARDIDVLTNADTPADAKEARKNGANGIGLCRSEHMFFKPERI 657
                  799**************************99998887777544313222222222333333333333300134444455666676677778899************************************98776 PP

  == domain 2    score: 94.5 bits;  conditional E-value: 8.3e-31
    TIGR01417 345 qfpkeenPflgyRaiRlllekeeilrtqlrAilrAs....ayG...klkvliPmvltveEikevkqlleeekqel.keegkaisenievGvmiEiPsaaliaeklakevdFfsiGtnDLiqYtlavdRen......ekvsnlyqplnPavl.......rliklvieaakk..egiwvgvCGElagDelaillllG.lGlrelsmsassilki 532
                  +  +e nP+lg R  Rl + +  i+  q rAil A+    + G   k  +++P v ++eE+++ k+l++++ +++ +e+gk  s + ++G+miEiP aal a+++a+e +Ffs G+nDL+q t++ +R        + +s+   + +P v        +lik+ +e+++k   + ++gvCGE +gD +++ ++    Gl+ +s s+  ++ +
  MMETSP1061-20121228|29320_1 739 EAMEEVNPMLGLRGCRLGITRPSIIEMQTRAILEAAlnaiDAGvdaKPDIMVPLVGKIEEFRNQKALIQSVAEKVfEEKGK--SCEYKIGTMIEIPRAALTAHEIAEEAEFFSFGSNDLTQMTFGYSRDDvgsfvpDYMSKGILQDDPFVTldtegvgQLIKMTVERGRKvrPNLKIGVCGEHGGDPRSVHFFSNeAGLTYVSCSPFRVPIA 948
                  566899**************************98762222344444889********************998876155565..567889***************************************7522211122232222233432223333338********9863369*************9999885326777777776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (962 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.58u 0.13s 00:00:00.71 Elapsed: 00:00:00.48
# Mc/sec: 2645.28
//
Query:       MMETSP1061-20121228|29316_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       314  (0.076548); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.41
# Mc/sec: 1487.29
//
Query:       MMETSP1061-20121228|29324_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   20.6   0.1        0.1   11.1   0.0    3.3  3  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
    0.00018   17.3   0.3      0.011   11.5   0.0    2.1  2  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
     0.0004   18.0   0.2       0.15    9.7   0.0    2.5  2  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0038   13.7   0.0       0.14    8.5   0.0    2.1  2  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.6   0.0     0.041        42      76     104 ..     105     133 ..      99     138 .. 0.88
   2 ?    2.7   0.0     0.038        39      45      75 ..     145     175 ..     142     179 .. 0.81
   3 !   11.1   0.0   9.8e-05       0.1      55     117 ..     242     302 ..     232     304 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.041
    TIGR02795  76 pdallklgeslqelgqkekAkktlqevik 104
                  ++ l++ g++l+ +g++ +A++ + +v k
  MMETSP1061-20121228|29324_1 105 AKKLFNEGRALESQGNMIAAQRLYGKVTK 133
                  5689999******************9987 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.038
    TIGR02795  45 lGealyakkkykdAakaflevvkkypkseka 75 
                  lG++++a +++ +A+++++++++  ++s+  
  MMETSP1061-20121228|29324_1 145 LGNTQVALGDLPAAEENYSKAIALCQESSAE 175
                  7999999999999999999998877776654 PP

  == domain 3    score: 11.1 bits;  conditional E-value: 9.8e-05
    TIGR02795  55 ykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYPkssaaklakk 117
                  y+ A k+++ +++   + + +   +l+ +++  + g+ +  +  l++v +r+P++++ k+a++
  MMETSP1061-20121228|29324_1 242 YNMADKNYNLAIS--MTANEVNPFWLRSAMVKLQVGDLQGGRDLLKRVENRFPDAPEVKAASS 302
                  6677777777777..4556667789********************************999875 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0     1e-05     0.011     169     232 ..     115     178 ..      98     182 .. 0.78
   2 !    3.9   0.1    0.0019         2     104     185 ..     205     287 ..     191     314 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1e-05
    TIGR02917 169 alaenkldearalvdevLtadpknvdAllLkgdlllssgnieeAlaayrkaielkpnaiaalla 232
                  + +++++  a+ l  +v +++p ++  ++ +g+ + ++g+  +A++ y kai+l  +++a+ +a
  MMETSP1061-20121228|29324_1 115 LESQGNMIAAQRLYGKVTKISPRFIYGWSNLGNTQVALGDLPAAEENYSKAIALCQESSAEAAA 178
                  4567777788888888888888888888888888888888888888888888888887776655 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0019
    TIGR02917 104 gkfqkvldelekksslddeeaaellalrglAaLglgeleeAqksleqAlaiapksle.aklglAqlalaenkldearalvdev 185
                  g  +++l+ l +++ l +   a++l+ ++ A+  +g  + A k++++A +  +++ +   l +A ++l+ ++l+++r l+ +v
  MMETSP1061-20121228|29324_1 205 GRKEEALKDLRQANTLRERPDAVILQNLARAEELNGFYNMADKNYNLAISMTANEVNpFWLRSAMVKLQVGDLQGGRDLLKRV 287
                  45567777777777777777788888888888888888888888888877766554415677777777777777777777666 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9   0.0     0.002       2.1      61     121 ..     114     174 ..     104     180 .. 0.80
   2 !    9.7   0.0   0.00014      0.15      58     123 ..     232     298 ..     205     316 .. 0.89

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.002
    TIGR02552  61 clqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklaieiaeekee 121
                  +l  ++++  A+  Y+  +++++   +    +++  +alg+   A++    ai++++e+++
  MMETSP1061-20121228|29324_1 114 ALESQGNMIAAQRLYGKVTKISPRFIYGWSNLGNTQVALGDLPAAEENYSKAIALCQESSA 174
                  5566777788888888888888877777788899999999999999999999999998875 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00014
    TIGR02552  58 LaaclqalkeyeeAiaaYalaaaldlddprpvy.haaecllalgekeeAlkaLklaieiaeekeeys 123
                  La +    + y+ A ++Y la ++++++ +p++ ++a ++l++g+ +  ++ Lk++ ++  + +e +
  MMETSP1061-20121228|29324_1 232 LARAEELNGFYNMADKNYNLAISMTANEVNPFWlRSAMVKLQVGDLQGGRDLLKRVENRFPDAPEVK 298
                  8888888999*********************9847899************99999988888777665 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.0   0.0    0.0065       6.7     413     460 ..     119     166 ..     104     174 .. 0.87
   2 !    8.5   0.0   0.00014      0.14     406     471 ..     233     299 ..     196     312 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0065
    TIGR00990 413 gefaeaakdydksidldpdfifsyiqlavlqyklgsiassealfrrak 460
                  g+   a++ y k  ++ p fi+ +  l+ +q  lg +  +e  +++a+
  MMETSP1061-20121228|29324_1 119 GNMIAAQRLYGKVTKISPRFIYGWSNLGNTQVALGDLPAAEENYSKAI 166
                  677789999999999999999999999999999999999999998886 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.00014
    TIGR00990 406 aqlhfikgefaeaakdydksidldpdfifsy.iqlavlqyklgsiassealfrrakkkfpeaPdvyn 471
                  a+ + + g ++ a+k+y+ +i + ++ + ++ ++ a+++ ++g ++    l++r+  +fp+aP+v  
  MMETSP1061-20121228|29324_1 233 ARAEELNGFYNMADKNYNLAISMTANEVNPFwLRSAMVKLQVGDLQGGRDLLKRVENRFPDAPEVKA 299
                  5556677889******************99647899****************************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.42
# Mc/sec: 1279.04
//
Query:       MMETSP1061-20121228|29323_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 3191.74
//
Query:       MMETSP1061-20121228|29325_1  [L=302]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (302 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1733.07
//
Query:       MMETSP1061-20121228|29326_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1631.39
//
Query:       MMETSP1061-20121228|29328_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1115.31
//
Query:       MMETSP1061-20121228|29329_1  [L=1993]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-24   83.4 338.9    2.3e-09   33.4  33.7    8.0  8  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    2.4e-11   39.9 347.1    2.4e-07   26.7  33.9    8.3  9  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.9  10.3   0.00022      0.46     312     422 ..     133     237 ..     109     263 .. 0.42
   2 !   12.8  32.8   1.9e-06    0.0039     681     932 ..     307     554 ..     281     564 .. 0.46
   3 !   17.0  41.7     1e-07   0.00021     678     984 ..     545     850 ..     544     862 .. 0.88
   4 !   26.2  22.3   1.7e-10   3.4e-07     711     982 ..     868    1136 ..     856    1139 .. 0.87
   5 !   30.2  36.2     1e-11   2.1e-08     670     950 ..    1138    1431 ..    1105    1433 .. 0.84
   6 !   33.4  33.7   1.1e-12   2.3e-09     234     508 ..    1248    1530 ..    1246    1538 .. 0.71
   7 !   12.2  35.5   2.9e-06     0.006     682     940 ..    1495    1748 ..    1485    1757 .. 0.35
   8 !    4.6  31.4   0.00055       1.1     681     927 ..    1716    1972 ..    1712    1983 .. 0.41

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.00022
    TIGR02168 312 eqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqe 422
                  ++l++++++l++++++ e++     +ela++e  +++ ++ele ++a+ +    +l + e+ ++++e +++++ +e+ +++e+ a ++ +++ l+++l ql++++++ +++
  MMETSP1061-20121228|29329_1 133 RDLKHSNSALSAKMATMERR---HMNELAQVEGSTAKRRKELEMINAKQKM---KLMQYEQYKTAAESKMKQQDTELTKVKEESAFQRHTISDLKNQLYQLQQELDERDED 237
                  22333333333333222222...2333333333333333333333333333...333333333333444444444444444444444444444444444444443333333 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.9e-06
    TIGR02168 681 ieeleeeieeleekiaelekelkelekeleeleeeleklrkeleel.........erklselkkeler..lekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelr 932
                   eel +ei+el++++ e     + ++k+l++l+ +le +++++ ++         ++ l++ + e er  l  +  + +++++ql++++ ele+++++l ++ ++ ++  +e+e+ +e+ e+++++l+++  +l+e+ +e+e++l+ el+++ +e++ +     +  a++++++ eleeq+e+ +e++++++a ++e +++       ++  ++ +   + + + lr  l++ ++++ +lek+++e++rele ++e+l++++++
  MMETSP1061-20121228|29329_1 307 NEELVKEIQELQDQLME----YQGYDKKLKDLQRQLEAAQRNSSDMgipprpttpTHPLNKGQPERERppLAPSKSRDQDEAQQLQDARGELEAHKQKLLQRESSVRDLEQEKEALVEAHEQRVQELEDRYLDLEEEWKEQESALRkELESRSQENTDE--IEARVRAEQQEQIVELEEQLEQYAEKLAQVAATLAESRQQ-------AKTQEQYR---KDEAEDLRMILDSHEADIVRLEKELDEARRELELRDEELEEIKQK 554
                  23333333333333333....333344444444444444444444444443322222233222222221133344455555666666666666666666666666666666666666666666666666666666666666666665555555543322..2223334445555555555555555555555555444443.......22222222...222222333344444444444444444444444444444444443 PP

  == domain 3    score: 17.0 bits;  conditional E-value: 1e-07
    TIGR02168 678 kkeieeleeeiee.leekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleek...veeeeeeaeeelkrleekik 984
                  ++e+ee++++    +++  +e ek+++e+e+++   + +  + ++ +++  + +s+l++el +  ++v++le +l++l+ke+ e+    e+ +++l +    +++ae++   ++a++ +l e++++ ++++++l++e+++ + +++e +e+++  e+++++l+k+l++ e+ ++ +  +  +l+++++ ++++  ++++e++ l+++     e+l++l++e + ++e+l+e++ ++  l++e ++l ++l++l+l le+ + ei++  e+ s+  e+el e+++ ++    +e+e+ ++e+e+k l+e+ +
  MMETSP1061-20121228|29329_1 545 DEELEEIKQKYVLlVQKHGKEDEKKIEETETKTLLTTADGVESEQSSDSNAKLISDLEEELYNSVNTVNALELQLEELRKERDEMVVTHEADKAKLISDL-GAAAAEKDEGLETADLHKLWEQTTTKTKEVKSLKDEIENMRHRVQESTETARLAEQKVQELQKQLQDHESDAAAKDSDSNDLSEKLKLAQTQVVDSNKEIAMLTERI----EELRSLSSENQHMQEQLQEAQIALISLDDEKQALHDELSELKLSLENERKEIQNEMETQSKLKETELAELQKVKDLispLEAEKLRLEDEVKTLKEAKT 850
                  67888888876541566678999999999999999999999999999999***********************************999999999887764.456666666777899****************************************************************************************9999....7999999999************************************9999999877777777777777777766633358888899*******998765 PP

  == domain 4    score: 26.2 bits;  conditional E-value: 1.7e-10
    TIGR02168  711 eleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkrleek 982 
                   ++e+   +l++++eel+++ s  +++l+   +++ +l +    le+++   e e +e +++ e+a +elke ++ ++++++++ ++ ee+k l+++l+ +++++++ k+++++  ++  +++ +i++l+k  e+ +++ +e+ + i++l ++   +e+ +++l+ ++ +l ke+  ++ ++++ r++ ++l++e+++l+++ +    ++ e++e+++++++ l+  + +i+ +++++ +  e +  + ++lee ++ +  +++e++k+le++
  MMETSP1061-20121228|29329_1  868 RMENLQLDLERQIEELKEEKSLINSKLKDRDTTIATLLRSSMVLERKIGARETELRESRDNHEKAVAELKELRSAVNSNNEDFSKFGEEMKYLKRQLKIAKTDAKRWKRALQDDGTTSGEYRYQISMLQKANEDYADTVQERDHAIQNLVNQSMGQEKHIRDLKIRISSLMKEV--ESVRMNKGRNDENALRAEIDRLQDESEIFAGQIIEQDEEFKRMQRVLKDRDEQIRVMKNKIGATEESDIPNDSALEE-RDRQILDLQEKIKSLETQ 1136
                   455555677788888888888888888888888888888888888888888888888888889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999..57889999999999999999999999999999999999999999999999999999999999999999999999988.789999999999999876 PP

  == domain 5    score: 30.2 bits;  conditional E-value: 1e-11
    TIGR02168  670 tessilerkkeieeleeeieeleekiaelekelkelekeleeleeel...eklrkeleel.....erklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaei.....eqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlsee 950 
                    +++++  + e ++l++e++e++e++++ + el +l+++l e++e++   ++lr +le++     e k ++ ++ +++  +e ++  ++  ++ kele l  e  ++e++l+++e+el++ e+ i+el++++     ++++++++ ++++l+++ +e+++l+ee++  +++l+++++ +++++++++el++q ee +ee++ ++ +++   ++ ++l  ++++ ++e ++++e +++  e+ ++l+ee+ el+++++ l++ +ee++ +++qle++++ l+++i++ q++l ++
  MMETSP1061-20121228|29329_1 1138 SDKTVIVDSMEFKNLQAELDEMQEAAESNRVELRDLRQQLWEAKEAAgsaNDLRVQLEQAkwafdEYKRKNSSETISKNDSELQTNLDKSLSRIKELEALLSENPQTETKLTDLETELQARETVIKELREQLsgawaDTQRSNIEGSEAELKSKVEEIRTLNEELNASQRELNDIRELLQSKTTMVTELTNQVEEYKEEVSVIRGQLQASASTATDLAIQTKASKEEIEAMREVISAKTEAVNSLNEEVSELQSHASGLRTTVEEKTGRIEQLEAAVNILTNDINNCQKQLDSK 1431
                   455666677899**************************9988887651115667777777333333333334444444444444444444445555666666888899999******************99722222567888899999*********************************************************************************************************************************************9875 PP

  == domain 6    score: 33.4 bits;  conditional E-value: 1.1e-12
    TIGR02168  234 leelkeeleeleeelkeaeeel.....eeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqa....rlesleslqenleglse 508 
                   l++l++el++ e+ +ke++e+l     ++ +++++ +e+el+ + +e++ l+eel++ q+el+++++ ++ +++++ +l ++ e+ ++e + +  ql+ + s+ ++l+ ++++++ee+e ++e + +  ++++++++e+ el+s+++ l++ +ee+  ++ +le  ++ l++++++ +++l + +++ + l+++ +++e +l+ea++ + +l ++l+++++ l  le+el++++++ ++ ee  + ++q l + +++laq+++    + +sle+ +enl ++se
  MMETSP1061-20121228|29329_1 1248 LTDLETELQARETVIKELREQLsgawaDTQRSNIEGSEAELKSKVEEIRTLNEELNASQRELNDIRELLQSKTTMVTELTNQVEEYKEEVSVIRGQLQASASTATDLAIQTKASKEEIEAMREVISAKTEAVNSLNEEVSELQSHASGLRTTVEEKTGRIEQLEAAVNILTNDINNCQKQLDSKTDSIDDLDKRLRDNEVELKEAKNLKLKLGSDLADSQARLGALEKELSNAITETSSNEELAR-KNQSLVQENASLAQKNKslaeENASLENANENLMEESE 1530
                   55566666666666666666652222245567777888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888887544444.44444444444444333000033444444444444333 PP

  == domain 7    score: 12.2 bits;  conditional E-value: 2.9e-06
    TIGR02168  682 eeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleeal.aelreeleelse.elrelekkvkelereleelreklaqlelrleelevei 940 
                   + l +e + l++k ++l +e ++le+++e+l ee e+l ++ + l ++l+ l+++ +++++  e+le+++++l+  ++el++e e+l ++++++e+e+   ++  +e+++++++  + l++ +++l+e +++l e ++++++    +esl+++  +le++  ++e+++e l+ ++ +l++e ++l+e    l+ +l++++ +++++e+a+ ++ ++++++ls+ +  e+++ ++ l++++e+  e++ ++ ++l+++e+e 
  MMETSP1061-20121228|29329_1 1495 QSLVQENASLAQKNKSLAEENASLENANENLMEESETLTNDNQILCHELQTLDQQNHTISEAKENLERDVESLSTFVAELRNENESLIDKRNKSEHEIMSLSKSGAEEKNSLKRELDTLSQANDSLTEENRALVEKNITLTQ---SIESLKEKNMSLEEKGVKMEKEMEFLTGDMDALSKESSKLQE----LQLQLDRAQRQREEMEKAIiENYEKQMTSLSSsKDTEIDNLRNSLTASREKNVESMGEMMAQLKSMEQEN 1748
                   3334444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444333333333333333333333333333333333333332...333333333333333333333333333333333333333322....3333333333333333332122222222222101122222222222222333333333333333333322 PP

  == domain 8    score: 4.6 bits;  conditional E-value: 0.00055
    TIGR02168  681 ieeleeeieeleek.iaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeer....eeleeeleeaeeelkeaeeeieeleaeieqlkeelk....alrealseleaeltelkeeaaekee..rleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelrekla 927 
                   i++l++ +++  ek ++++ + +++l++  +e  + + + + el+ +++++ +l++ l++ e++ve+++ +++q+++ +++++  r    ee ++e+ + ee++ ++e+ei++l+ ++e+ k e+k    +l++al+++ +  + lk+++ ++++  r+ +++++++ l+k+ ++l+e+  +l  ++e+++ +i+ +e e +++ ee+ee + + +++ ++ ++l ++ ++ s++  + + kv+++e+ ++ +++k +
  MMETSP1061-20121228|29329_1 1716 IDNLRNSLTASREKnVESMGEMMAQLKSMEQENSDLRVQFELELRAKDQQIYALEQTLHAQEQTVETMRTEMDQIQSGMQHATSVRrgevEEMQQEVMQMEEKAMKQEREIVALKMQLEERKLEHKadvvKLKDALAKAMDHDSPLKKTIFDLQNndRMLEVRERLELLKKRNTDLQEENLNLGGRLERAAIQINAFELE-KQQAEEIEEENMKLRKQLKEYEQLLSQSAKSSRSAPSPKAKVTDKEATMKTKDKKKK 1972
                   44444444443332122222222333333333333334444444444445555555555555555555555555444444443322111133344444444444445555555544444444444400004444444444444444444444333113334445555555555555555555555555555555555554.222333333333333333333334444444444444555555555555555555544 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -5.2  18.9      0.49     1e+03     680     897 ..     128     343 ..     110     350 .. 0.50
   2 !    7.4  47.1   7.6e-05      0.16     670     968 ..     377     688 ..     368     690 .. 0.67
   3 !    6.9  38.8   0.00011      0.22     231     508 ..     568     850 ..     563     860 .. 0.61
   4 !   14.9  38.1   4.1e-07   0.00084     672     942 ..     689     965 ..     682     979 .. 0.68
   5 !   18.8  29.0   2.8e-08   5.8e-05     677     967 ..     873    1162 ..     859    1166 .. 0.85
   6 !   26.7  33.9   1.1e-10   2.4e-07     222     508 ..    1206    1492 ..    1169    1501 .. 0.74
   7 !   25.2  34.3   3.3e-10   6.7e-07     667     960 ..    1355    1644 ..    1342    1650 .. 0.70
   8 !    7.4  38.4   7.5e-05      0.15     234     517 ..    1495    1790 ..    1489    1795 .. 0.59
   9 !    0.8  29.9    0.0076        16     234     485 ..    1728    1967 ..    1721    1990 .. 0.44

  Alignments for each domain:
  == domain 1    score: -5.2 bits;  conditional E-value: 0.49
    TIGR02169 680 lrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseeki......eeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLe...eelkdLkkereelea 897
                   ++ + +L+++ ++l ++++ +e+r     ++l + e ++ +++kele+++++++    +l + e++  + e +++++++el+++++e + +++++++lk++l +l++el+e            ++  +++eee  + + r  +   +      +  l  ++ +        +    ++  + ++++  + eel +e++el+ ++ e++   ++lkdL+++ e ++ 
  MMETSP1061-20121228|29329_1 128 TAQIIRDLKHSNSALSAKMATMERRHM---NELAQVEGSTAKRRKELEMINAKQK---MKLMQYEQYKTAAESKMKQQDTELTKVKEESAFQRHTISDLKNQLYQLQQELDERDEddesrpGDDDDDDDDIEEEDGDHDLRRPHSGDRH-----NLPLHPSHTRSNSGGLLIAPTSSSMSTDDLQQMALDNEELVKEIQELQDQLMEYQgydKKLKDLQRQLEAAQR 343
                  456677888888888888888777654...4455566677777777777776554...4444444444555555555555555555555555555555555555555555443330000003333333444444333333332222222.....2223333333333333444445555566666666666777777777777666654111444444444444443 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 7.6e-05
    TIGR02169 670 sasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeekl.kerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieei......eeelekleeevsriearleeieaelnklelekelleeeiqelqee.ieeleeqkkeiekeieelkakl.......eeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkr.krlkelkaklealeeelseleeevkeeeeepeeelslekvkkelekveeel 968
                  + ++++++++l++  +eLe+++++l ++ ++++   +e+++ +++ e++++e+e +   leee +++ ++  +ele++ +e  +e+e+     +e +++i elee+l+++ e+l+++ a l+e++ + +      ++e+e+l+  + + ea +  +e+el++ + e el +ee +e++++ +  ++++ ke ek+iee ++k         e e+  +  ++ + +Leeel +  + ++ le +l+el+k+++e+ ++ e  + k +++l a+++++ e l++ + + k  e+   ++ +++ +k e+e++ +++
  MMETSP1061-20121228|29329_1 377 KSRDQDEAQQLQDARGELEAHKQKLLQRESSVRDLEQEKEALVEAHEQRVQELEDRYLDLEEEWKEQeSALRKELESRSQENTDEIEARV--RAEQQEQIVELEEQLEQYAEKLAQVAATLAESRQQAKtqeqyrKDEAEDLRMILDSHEADIVRLEKELDEARRELELRDEELEEIKQKyVLLVQKHGKEDEKKIEETETKTllttadgVESEQSSDSNAKLISDLEEELYNSVNTVNALELQLEELRKERDEMVVTHEADKaKLISDLGAAAAEKDEGLETADLH-KLWEQTTTKTKEVKSLKDEIENMRHRV 688
                  5678999*************************************************9888776444303344556665555555555432..234445566666666666666666666655555443300001145677888888888999999999999999999999998888766514556666777888888877754211111123344445555667888888888888888888888888888888887777655145667777777777766666643.344444556666667777777666665 PP

  == domain 3    score: 6.9 bits;  conditional E-value: 0.00011
    TIGR02169 231 kelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrl...leelkrleeelaelkaelerieekiaeleeeleelaeeikka....eqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesr 508
                  k++e++e++   ++++  e e++ +   + i++le+el +  +++++l+ ++e+l +e+   v ++ ++    i+ l +a aek e le a+  l+k+ ++   + +e+++l+ eie+ + + ++ +e  + ++++ +el+++l++ + +aa+    +++l ekl  ++ +  ++++e+  l   +eel+ l++e ++++++l++++ ++  l++e+++l++e+++     e++++++++++e+ +k ++   +el+k+++ +s le e  +le + k+++e+++
  MMETSP1061-20121228|29329_1 568 KKIEETETKTLLTTADGVESEQSSDSNAKLISDLEEELYNSVNTVNALELQLEELRKERDEMVVTHEADKAKLISDLGAAAAEKDEGLETAD--LHKLWEQTTTKTKEVKSLKDEIENMRHRVQESTETARLAEQKVQELQKQLQDHESDAAAKDSDSNDLSEKLKLAQTQVVDSNKEIAMLterIEELRSLSSENQHMQEQLQEAQIALISLDDEKQALHDELSELklslENERKEIQNEMETQSKLKETELAELQKVKDLISPLEAEKLRLEDEVKTLKEAKT 850
                  44555555555555555666677777788888888888888888888888888888888777777777777777777777777777776655..33444444444445555555555555555555555555555555555555555555555555555555555444444444444444331114667777888888888888888888888888888888888761112445555556666666666666677888888888888888888888888777764 PP

  == domain 4    score: 14.9 bits;  conditional E-value: 4.1e-07
    TIGR02169 672 sekeklerlre.rleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklke...rleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeie.eelekleeevsriearleeieaelnklelekelleeeiq..elq.eeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevk 942
                  +e+ + +rl+e +++eL+++l++  s+ +  ++ +++ls+kl+ a+ ++ + +ke+ +l e+ e+l+    + + ++e+l+e + +l   ++e+++l+ e++el+ +l++ ++++++  +++ ++k++e e +el+k+++ +s +ea    +e e++ l+  k   +e i+  +l  +  + +e+ + ++e++ieelk ++  ++++l+     +++L  +   L++++  +e elre +++ e++ ae+++ r+ +++ ++  ++  ee++ l++++k
  MMETSP1061-20121228|29329_1 689 QESTETARLAEqKVQELQKQLQDHESDAAAKDSDSNDLSEKLKLAQTQVVDSNKEIAMLTERIEELRSlssENQHMQEQLQEAQIALISLDDEKQALHDELSELKLSLENERKEIQN--EMETQSKLKETElAELQKVKDLISPLEAEKLRLEDEVKTLKEAKTEDSEPIApiNLSrSMPDRMENLQLDLERQIEELKEEKSLINSKLKDRDTTIATLLRSSMVLERKIGARETELRESRDNHEKAVAELKELRSAVNSNNEDFSKFGEEMKYLKRQLK 965
                  455555555441568888888888888888888888888888888888888888888888777665541114555666667777777777888888888888888888888888875..4445555555543678888888888888888888888777744444444433112330333456666777888888888888888888888888888888888888888888888888888888888888888888888888888888888887776553 PP

  == domain 5    score: 18.8 bits;  conditional E-value: 2.8e-08
    TIGR02169  677 lerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelse..ekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieelee.qkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkkelekveee 967 
                      l++++eeL++e++ + s+l+ ++  +  l ++    e+ki+++e el + ++++ek+ ++l+el++ +++ +e+  +  ee+k l+ +++  + ++++ k al+d      e   +i  +++  e+  ++v++ +++++++   +n++  +++  ++ +  + + ++e+e+ + ++ ++  ++l+a+++ l+ e e  + ++ e +ee k +++  +++++++r +++k+   e++   + + l+e+  ++  l+e++++le + ++++      ++ +++++el++++e+
  MMETSP1061-20121228|29329_1  873 QLDLERQIEELKEEKSLINSKLKDRDTTIATLLRSSMVLERKIGARETELRESRDNHEKAVAELKELRSAVNSNNEDFSKFGEEMKYLKRQLKIAKTDAKRWKRALQDDGTTSGEyrYQISMLQKANEDYADTVQERDHAIQNL---VNQSMGQEKHIRDLKIRISSLMKEVESvRMNKGRNDENALRAEIDRLQDESEIFAGQIIEQDEEFKRMQRVLKDRDEQIRVMKNKIGATEESDIPNDSALEERDRQILDLQEKIKSLETQ-ESDKTVIVDSMEFKNLQAELDEMQEA 1162
                   456899****************************************************************************************************99766555400455556666666666666666666554...4444444446666666777777777762445566777889***********************************************9999998999*********************86.5777777899*************987 PP

  == domain 6    score: 26.7 bits;  conditional E-value: 1.1e-10
    TIGR02169  222 releltlllkelealekqkekiek...elaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesr 508 
                   r+     ++k+  +l++++ k  +   el++l  e  + e ++ +le el+++e +++el ++++    +   + ++++e  +ae+++  ++i+  +eel+ ++++l+ + + ++++   ++el +++ee+k e   +  +l++++ +  +l  + ++ ++e +++re  +++ e++++l+ee  el+ + + l  + ++++ ++++l+a+++ + ++i++ +++l+++ + i   +++l+ ++ +l++a++ + kl ++l++ + +l +le+el+++ ++ +  ee  r
  MMETSP1061-20121228|29329_1 1206 RKNSSETISKNDSELQTNLDKSLSrikELEALLSENPQTETKLTDLETELQARETVIKELREQLSGAWAD---TQRSNIEGSEAELKSKVEEIRTLNEELNASQRELNDIRELLQSKTTMVTELTNQVEEYKEEVSVIRGQLQASASTATDLAIQTKASKEEIEAMREVISAKTEAVNSLNEEVSELQSHASGLRTTVEEKTGRIEQLEAAVNILTNDINNCQKQLDSKTDSIDDLDKRLRDNEVELKEAKNLKLKLGSDLADSQARLGALEKELSNAITETSSNEELAR 1492
                   2222233333333333333333330003444445556677777777777777777777777776664444...4467888899999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988887755555443 PP

  == domain 7    score: 25.2 bits;  conditional E-value: 3.3e-10
    TIGR02169  667 elvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepeeelslekvkke 960 
                   + ++++ ke++e +re + +  +  +sl +e+++++++++ l+  +++ + +ie++e+ +++l ++ ++ +++l+ + ++++ l++ l +++ elke ++   +l  +la+ ++ l +le+els+   e++++  e+l  + +++ +  +++ ++ ++l  e+++le++ ++l ee e l++ ++ +++e++ l ++ + ++e  e+le  v+ L+   ++L++e e l  + ++ e+++  l+ +  ++++ lk+   +l+++++ l+e ++++   e++   + s+e +k++
  MMETSP1061-20121228|29329_1 1355 AIQTKASKEEIEAMREVISAKTEAVNSLNEEVSELQSHASGLRTTVEEKTGRIEQLEAAVNILTNDINNCQKQLDSKTDSIDDLDKRLRDNEVELKEAKNLKLKLGSDLADSQARLGALEKELSNAITETSSN--EELARKNQSLVQENASLAQKNKSLAEENASLENANENLMEESETLTNDNQILCHELQTLDQQNHTISEAKENLERDVESLSTFVAELRNENESLIDKRNKSEHEIMSLSKSGAEEKNSLKRELDTLSQANDSLTEENRAL--VEKNITLTQSIESLKEK 1644
                   5567778888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888777766544..35555555555555666666666666667777777777777777777777777777777777777777777777777777777777777777777777777777777777777766666666666666666666665544..22222334455555544 PP

  == domain 8    score: 7.4 bits;  conditional E-value: 7.5e-05
    TIGR02169  234 ealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidkl....keeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleel...krleeelaelkae.lerieekiaeleeeleelaeeikka.....eqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseeesreskaveevl 517 
                   ++l ++ + + ++ ++l ee + le+  e+l +e+e + ++ + l ++++   +++  ++ e  e+l+ ++e+l+  +ae ++e e + ++++k e ei +l    +ee+++l+re+ +  +  ++l+ee ++l e+  +l + +e++++++  l e+  ++++++e l+  ++ l +e ++l+e +    r++ +++e++++ +e+ e++++ l +++++  ++++++     e+++e++ e+++++++  ++ ++   + e el+++ +++ +le + +a e++++  +   + +
  MMETSP1061-20121228|29329_1 1495 QSLVQENASLAQKNKSLAEENASLENANENLMEESETLTNDNQILCHELQT-LDQQNHTISEAKENLERDVESLSTFVAELRNENESLIDKRNKSEHEIMSLsksgAEEKNSLKRELDTLSQANDSLTEENRALVEKNITLTQSIESLKEKNMSLEEKGVKMEKEMEFLTGDMDALSKESSKLQELQlqlDRAQRQREEMEKAiIENYEKQMTSLSSSKDTEIDNLRNSltasrEKNVESMGEMMAQLKSMEQENSDLRVQFELELRAKDQQIYALEQTLHAQEQTVETMRTEMDQI 1790
                   333333333444444444444444444444444444444444444444444.24455667777777777777777777777777777777777777776554111256788888888888888888888888888888888888888888888888888888888888888888888888888886511144455556665552466777777777776666666654321111344444444444444433333333346678888888888888888888888875555554444 PP

  == domain 9    score: 0.8 bits;  conditional E-value: 0.0076
    TIGR02169  234 ealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeelekleke 485 
                   e++ +++ ++ ++l+++e+e  +l ++    e el ++ +++ +l++ +++  e+   ++++++ ++++ ++   +a ++ + e+e++++++ ++e++  k+++ei +l+ ++ee k e ++   +lk++ ++ ++  + l++   + ++  +++ e++e+le lk++  +l+ e+  l  +l+r+  +++  +      +++ +e+eee  +l++++k+ eq l+q ++   +a + + k +++ + ++ +
  MMETSP1061-20121228|29329_1 1728 EKNVESMGEMMAQLKSMEQENSDLRVQF---ELELRAKDQQIYALEQTLHA-QEQTVETMRTEMDQIQSGMQ---HATSVRRGEVEEMQQEVMQMEEKAMKQEREIVALKMQLEERKLEHKADVVKLKDALAKAMDHDSPLKKTIFDLQN-NDRMLEVRERLELLKKRNTDLQEENLNLGGRLERAAIQINAFE----LEKQQAEEIEEENMKLRKQLKEYEQLLSQSAKSSRSAPSPKAKVTDKEATMKTK 1967
                   4444455555555555555555444432...23333333333333333333.23333334444444433322...223333444444444444444444444444444444444444444444344444444444444444333333332.3445556666666666666666555555555555555544332....234444455555555555555555555555555444443333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1993 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       834  (0.203315); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 4.31u 0.21s 00:00:04.51 Elapsed: 00:00:02.06
# Mc/sec: 1270.79
//
Query:       MMETSP1061-20121228|29330_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-10   37.2   0.0    6.7e-10   37.2   0.0    2.6  4  TIGR01410 tatB: twin arginine-targeting protein translocase TatB


Domain annotation for each model (and alignments):
>> TIGR01410  tatB: twin arginine-targeting protein translocase TatB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.2   0.0   1.6e-13   6.7e-10       1      67 [.      94     164 ..      94     174 .. 0.84
   2 ?   -2.5   0.0      0.42   1.7e+03      39      53 ..     225     239 ..     214     267 .. 0.58
   3 ?   -2.3   0.0      0.35   1.4e+03      39      55 ..     251     269 ..     236     277 .. 0.54
   4 ?   -3.5   0.2      0.83   3.4e+03      49      61 ..     378     390 ..     366     408 .. 0.57

  Alignments for each domain:
  == domain 1    score: 37.2 bits;  conditional E-value: 1.6e-13
    TIGR01410   1 fdiGfsELlviavValvvlGPerLPkairavgklvralrklasdvkneldeelk....leelkeelkevek 67 
                  f+iG  EL+ i++++  vlGP +L k+++ +gk++++ ++ as+++++l+++++    lee+++  +e+++
  MMETSP1061-20121228|29330_1  94 FGIGTPELFTIILIGYFVLGPSDLYKLVKEIGKFIQNFQSFASEATATLENNMEsqlqLEEIRKAQRELNE 164
                  79*****************************************9999888776633336677766666554 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.42
    TIGR01410  39 rklasdvkneldeel 53 
                  ++  +++  e++ el
  MMETSP1061-20121228|29330_1 225 KRKKKTAEPEVEDEL 239
                  444444444444443 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.35
    TIGR01410  39 rklasdvkneld..eelkl 55 
                  +k+a+d+ +eld  eel+l
  MMETSP1061-20121228|29330_1 251 QKIANDIPAELDmdEELRL 269
                  4455565555531144444 PP

  == domain 4    score: -3.5 bits;  conditional E-value: 0.83
    TIGR01410  49 ldeelkleelkee 61 
                  l+ee k+ e +ee
  MMETSP1061-20121228|29330_1 378 LQEEFKAREANEE 390
                  4444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1874.25
//
Query:       MMETSP1061-20121228|29327_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 3418.94
//
Query:       MMETSP1061-20121228|29331_1  [L=565]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (565 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2571.51
//
Query:       MMETSP1061-20121228|29332_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   13.3   0.8      0.019   12.8   0.5    1.2  1  TIGR01223 Pmev_kin_anim: phosphomevalonate kinase
      0.031   11.3   0.0      0.037   11.0   0.0    1.1  1  TIGR00996 Mtu_fam_mce: virulence factor Mce family protein


Domain annotation for each model (and alignments):
>> TIGR01223  Pmev_kin_anim: phosphomevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.5   9.2e-06     0.019     145     182 ..      32      68 ..      19      72 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.2e-06
    TIGR01223 145 dvesecdlddladgfdvvlendeeldeealeillerlr 182
                   +esec ld++ d +  vl++ e+ +e +l+++++++ 
  MMETSP1061-20121228|29332_1  32 CIESECALDEVED-LLSVLKDTEKELEARLDKIMNMIA 68 
                  589**********.88999************9999874 PP

>> TIGR00996  Mtu_fam_mce: virulence factor Mce family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.8e-05     0.037     168     223 ..      41      96 ..      15     104 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.8e-05
    TIGR00996 168 qlrelleglaqltaalnerdedigelidnlnrvldvladasdqldrlldnlatlia 223
                  ++ +ll+ l+   ++l +r+++i  +i++l+ v +   +++d++ +++++l ++++
  MMETSP1061-20121228|29332_1  41 EVEDLLSVLKDTEKELEARLDKIMNMIAHLQHVNEKEERKTDEVRAFVQDLLRVFD 96 
                  44555666666666666677777777777777777777777777666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      235  (0.0572891); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 702.18
//
Query:       MMETSP1061-20121228|29334_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-24   82.1   0.0    2.8e-12   42.8   0.0    2.1  2  TIGR01235 pyruv_carbox: pyruvate carboxylase
    8.5e-24   81.2   0.0    1.5e-15   53.8   0.0    2.0  2  TIGR02712 urea_carbox: urea carboxylase
    2.2e-15   54.2   0.0    3.4e-15   53.6   0.0    1.2  1  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
    2.2e-09   34.2   0.0    2.6e-09   33.9   0.0    1.1  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    2.8e-09   35.5   0.0    4.6e-09   34.8   0.0    1.3  1  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
    0.00035   17.0   0.3     0.0005   16.6   0.2    1.2  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.8   0.0     4e-15   2.8e-12     371     452 ..      46     126 ..      35     138 .. 0.90
   2 !   37.3   0.0   1.8e-13   1.3e-10    1073    1143 .]     326     398 ..     308     398 .. 0.90

  Alignments for each domain:
  == domain 1    score: 42.8 bits;  conditional E-value: 4e-15
    TIGR01235 371 GvrldggnayaGaiispyydsllvkvsasastleeaaakmvralrefrirGvktnipfleavlenekflegsydtsfidetP 452
                   +rld+g a +G +++p+yd++l k++++a+t eea+  + + l  + i Gv+ n  +++avl+n+ f+ g   tsf++ + 
  MMETSP1061-20121228|29334_1  46 YLRLDSGVA-EGHVVTPFYDPMLSKIISYAPTREEAIDVLCKGLDSYVIEGVNHNARLVQAVLRNPAFRSGDTPTSFLNVHI 126
                  58*****98.8******************************************************************98764 PP

  == domain 2    score: 37.3 bits;  conditional E-value: 1.8e-13
    TIGR01235 1073 nkahvgapmpGvviev..kvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllvle 1143
                    +++v +pmpG++i    kv +G  ve+G++l vleamkm+ v++ap+ Gt++++ v++G  + ++ ++l++e
  MMETSP1061-20121228|29334_1  326 TSDKVLSPMPGTLIGFseKVFVGAIVEEGQELCVLEAMKMQNVLRAPRGGTIASLGVEKGAALVTDQVILEFE 398 
                   567899*******976337889*******************************************99999875 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.8   0.0   2.2e-18   1.5e-15     354     442 ..      37     125 ..      26     136 .. 0.91
   2 !   25.4   0.0   8.5e-10   5.8e-07    1127    1198 ..     322     395 ..     300     398 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.8 bits;  conditional E-value: 2.2e-18
    TIGR02712 354 lltevkfPedvrvdtwvekGtevsaeydPmlakiivhgkdreealeklkkaleetkvaGivtnldylksivssevfrkakvstrllekl 442
                    t+ ++ + +r+d+ v++G  v+++ydPml+kii ++ +reea++ l k l++  ++G+  n  ++++++ + +fr++++ t++l+  
  MMETSP1061-20121228|29334_1  37 SSTSSSLSSYLRLDSGVAEGHVVTPFYDPMLSKIISYAPTREEAIDVLCKGLDSYVIEGVNHNARLVQAVLRNPAFRSGDTPTSFLNVH 125
                  55666777889***************************************************************************965 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 8.5e-10
    TIGR02712 1127 eleegavaveselagrl..WkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalv 1198
                    +e+ + +v s++ g+l  +   v vg+ ve+g++l ++eamkm+ +++ap  G+++++ v++G a+ + ++++
  MMETSP1061-20121228|29334_1  322 VVEDTSDKVLSPMPGTLigFSEKVFVGAIVEEGQELCVLEAMKMQNVLRAPRGGTIASLGVEKGAALVTDQVIL 395 
                   56778889999999999444668999**************************************9998888765 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0     5e-18   3.4e-15     364     443 ..      45     124 ..      31     128 .. 0.94

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 5e-18
    TIGR00514 364 lgvrvdsavysgyavppyydsliaklivygktreeaiarmkralkeliieGikttidfhkliledekfkkgevdikylek 443
                    +r+ds v  g++v p+yd +++k+i y++treeai+ + + l+  +ieG++ +  + + +l ++ f++g++ +++l+ 
  MMETSP1061-20121228|29334_1  45 SYLRLDSGVAEGHVVTPFYDPMLSKIISYAPTREEAIDVLCKGLDSYVIEGVNHNARLVQAVLRNPAFRSGDTPTSFLNV 124
                  568**************************************************************************975 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.0   3.9e-12   2.6e-09     512     582 .]     322     394 ..     244     394 .. 0.76

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 3.9e-12
    TIGR01108 512 akakastdvtaplaGsiv..kvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgevl 582
                     ++s++v +p++G+++    kv  G+ v+eG+ l vleamkm++ ++a++ G+++++ v+kG+++ +++v+
  MMETSP1061-20121228|29334_1 322 VVEDTSDKVLSPMPGTLIgfSEKVFVGAIVEEGQELCVLEAMKMQNVLRAPRGGTIASLGVEKGAALVTDQVI 394
                  34467889********9833458999*****************************************999985 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   6.8e-12   4.6e-09      71     150 ..     320     393 ..     270     398 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 6.8e-12
    TIGR00531  71 eaakadkkehlvlsPmvGtFYrapsPeakpfvevGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygep 150
                  + + ++   ++vlsPm Gt    +   +k f  vG  v++g+ +c++eAmk+ n + a   g++ ++ ve+g +   ++ 
  MMETSP1061-20121228|29334_1 320 P-PVVEDTSDKVLSPMPGTLIGFS---EKVF--VGAIVEEGQELCVLEAMKMQNVLRAPRGGTIASLGVEKGAALVTDQV 393
                  3.36788999*********98654...5655..699***********************************998766665 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.2   7.3e-07    0.0005      21      90 ..     345     414 ..     341     415 .] 0.87

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 7.3e-07
    TIGR01348  21 vkvGdkveaeqslitlesdkasmevPsskaGivkeikvkvGdtlkeGavilllevadgaaddaeekaeaa 90 
                  v vG  ve++q l  le+ k    + +++ G++ ++ v+ G  l + +vil++e ++g++d+ +++ ++a
  MMETSP1061-20121228|29334_1 345 VFVGAIVEEGQELCVLEAMKMQNVLRAPRGGTIASLGVEKGAALVTDQVILEFELEGGDNDSDNDSDSVA 414
                  6689999999999999999999999999999999999999999999999999999999987666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1956.27
//
Query:       MMETSP1061-20121228|29333_1  [L=959]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (959 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.35
# Mc/sec: 3616.50
//
Query:       MMETSP1061-20121228|29335_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 2534.19
//
Query:       MMETSP1061-20121228|29336_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-08   31.3   0.0      9e-08   30.2   0.0    1.5  1  TIGR00229 sensory_box: PAS domain S-box protein
      3e-07   27.2   0.0    5.4e-07   26.3   0.0    1.3  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL


Domain annotation for each model (and alignments):
>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.2   0.0   4.4e-11     9e-08      26     117 ..     265     356 ..     260     362 .. 0.91

  Alignments for each domain:
  == domain 1    score: 30.2 bits;  conditional E-value: 4.4e-11
    TIGR00229  26 nilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgivrDIt 117
                   i+yv++ f +++GY+ ++++Grn + l  +   +    +i++ + + + +     ++ ++dG+ +w +  v+ +rd +++++ +vg+  +++
  MMETSP1061-20121228|29336_1 265 PIVYVSQGFLDLTGYQLDQVLGRNCRFLQGPGTDQSAVDVIRKGIAEGIDTSVCLLNY-KADGTPFWNQFFVAALRDaENNVVNYVGVQCEVS 356
                  69*************************999999999999*******788888888888.***********************99999876666 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.6e-10   5.4e-07      14     117 ..     253     357 ..     245     368 .. 0.90

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.6e-10
    TIGR02938  14 pvaisitdlkan.ilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmhrdvte 117
                  + ais   l  n i+y+ + f ++tGy  ++v+G+n   l    t +     + + +ae    +  lln + dg+ +  ++ va + ++  + + ++G+  +v+ 
  MMETSP1061-20121228|29336_1 253 NFAISDPTLPDNpIVYVSQGFLDLTGYQLDQVLGRNCRFLQGPGTDQSAVDVIRKGIAEGIDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNYVGVQCEVSK 357
                  66777655555549*************************************************************************************999886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 1873.23
//
Query:       MMETSP1061-20121228|29337_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.22
# Mc/sec: 2303.81
//
Query:       MMETSP1061-20121228|29338_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 772.14
//
Query:       MMETSP1061-20121228|29339_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1652.50
//
Query:       MMETSP1061-20121228|29340_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1350.35
//
Query:       MMETSP1061-20121228|29341_1  [L=956]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (956 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.41u 0.14s 00:00:00.55 Elapsed: 00:00:00.33
# Mc/sec: 3823.68
//
Query:       MMETSP1061-20121228|29344_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1599.71
//
Query:       MMETSP1061-20121228|29343_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1471.68
//
Query:       MMETSP1061-20121228|29346_1  [L=776]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.28
# Mc/sec: 3657.98
//
Query:       MMETSP1061-20121228|29342_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.5e-124  411.2   0.9     6e-124  410.7   0.6    1.1  1  TIGR02880 cbbX_cfxQ: CbbX protein
    3.1e-73  243.8   0.2    4.3e-73  243.4   0.1    1.1  1  TIGR02881 spore_V_K: stage V sporulation protein K
    6.8e-58  194.4   1.2      2e-57  192.8   0.8    1.7  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    5.6e-05   19.6   0.0    8.7e-05   19.0   0.0    1.2  1  TIGR00763 lon: ATP-dependent protease La
    0.00028   17.4   0.0    0.00039   16.9   0.0    1.2  1  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
     0.0013   16.1   0.1     0.0024   15.2   0.1    1.4  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0029   14.5   0.4      0.096    9.5   0.3    2.3  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
  ------ inclusion threshold ------
       0.75    7.5   6.9        5.7    4.6   3.6    2.5  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR02880  cbbX_cfxQ: CbbX protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  410.7   0.6  1.2e-126    6e-124       9     277 ..     117     391 ..     110     395 .. 0.94

  Alignments for each domain:
  == domain 1    score: 410.7 bits;  conditional E-value: 1.2e-126
    TIGR02880   9 eesgikevldeldreliglkpvktrireiaalllverlrqklglasaapslhmsftgnpgtgkttvalrmakilhrlgyvrkghlvsvtrddlvgqyightapktkevlkramggvlfideayylyrpdnerdygqeaieillqvmenqrddlvvilagykdrmdsffesnpglssrvahhvdfpdyseeellaiaellleeqqyrlsaeaeealaeyialrrkqpffanarsirnaldrarlrqanrllaaadkv......ldksdlvtieaed 277
                   ++g++e ld+ld+el+gl+pvk+r++eiaall+++++r+klg+ +a pslhm+ftg+pgtgkttva+rm +il ++gy r+gh+v +trddlvgqy+ghtapktke++k++mggvl++deayyly+  n+rdygqe+ieill+vmenq+ddlvv lagykdrmd+ff+  pg+ sr+ +h+dfp+ys +el++ia ++ ++ +y ++a+a  ++++yi++r++ pff+nar++rna+drar+  a r +++ +         + +dl++i+a+d
  MMETSP1061-20121228|29342_1 117 FKEGVQEQLDKLDQELVGLIPVKKRVKEIAALLVLDKMRRKLGFETAVPSLHMCFTGAPGTGKTTVAVRMGQILAKMGYSRQGHVVLATRDDLVGQYVGHTAPKTKEMIKKSMGGVLLVDEAYYLYNAANDRDYGQESIEILLNVMENQQDDLVVALAGYKDRMDKFFSYIPGMMSRIGNHIDFPNYSADELVQIAAVMAHQLEYDIDADAYPVFKDYISRRMELPFFSNARTVRNAMDRARMNSAIRTFERFAIQgengglCTVHDLKAIQATD 391
                  5789***************************************************************************************************************************************************************************************************************************************************9998766540001114555555555555 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.4   0.1   8.4e-76   4.3e-73       6     249 ..     130     372 ..     124     384 .. 0.95

  Alignments for each domain:
  == domain 1    score: 243.4 bits;  conditional E-value: 8.4e-76
    TIGR02881   6 eklvGleevkelikeiyalilinekrkeeglkaekqvlhmifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktrevikkalGGvlfideayslar.GGekdfGkeaidtlvkemedkreelvlilaGysdemdyflslnPGlksrfpisldfpdytveelleiakkmveereyklteeakaklreklakvksasekefsnarlvrnliekairrqavrllkksdvs 249
                  ++lvGl  vk+ +kei al ++++ r++ g+++   +lhm f+G PGtGkttva  +++++ +++   +Gh++ + r dlvG+y+Ghta kt+e+ikk++GGvl++deay l     ++d+G+e+i+ l++ me+++++lv+ laGy+d md f+s  PG+ sr+  ++dfp+y+++el++ia  m ++ ey +  +a   +++++ +    +   fsnar+vrn +++a  + a+r +++  ++
  MMETSP1061-20121228|29342_1 130 QELVGLIPVKKRVKEIAALLVLDKMRRKLGFETAVPSLHMCFTGAPGTGKTTVAVRMGQILAKMGYSRQGHVVLATRDDLVGQYVGHTAPKTKEMIKKSMGGVLLVDEAYYLYNaANDRDYGQESIEILLNVMENQQDDLVVALAGYKDRMDKFFSYIPGMMSRIGNHIDFPNYSADELVQIAAVMAHQLEYDIDADAYPVFKDYISRRM--ELPFFSNARTVRNAMDRARMNSAIRTFERFAIQ 372
                  579***********************************************************************************************************997615789***************************************************************************************9877..5789*********************99887665 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.8   0.8   3.9e-60     2e-57     276     549 ..     130     393 ..     101     400 .. 0.89

  Alignments for each domain:
  == domain 1    score: 192.8 bits;  conditional E-value: 3.9e-60
    TIGR03922 276 akqiGlervkeqvaalkssvevalvRaerGlavaqrskHlllaGPPGtGkttiArvvakiyaGlgvlrkpevrEvsRadligeyigeseaktnelidkaLggvlFlDEayaLvekrdgakddfGleaidtLLarlEndRdrlvviiAGYekdlDklLevneGLrsRFtrkieFesYspdElveiakrmaeerdsvlddaAaealleaatklaqestpdanGverrglDiagngrfvRnvvEraeeeRdfRlda....sdr.ldevtvddlkeiteddva 549
                  ++++Gl  vk++v+ + + + ++ +R++ G++ a+ s H+ + G PGtGktt+A  +++i+a +g  r+ +v+   R dl+g+y+g++++kt+e+i k++ggvl +DEay L +    +  d+G+e i+ LL  +En+ d+lvv  AGY++ +Dk+    +G+ sR   +i+F+ Ys+dElv+ia +ma++ +  +d  A   ++        + +       r  l    n+r vRn ++ra+ +  +R  +    + +  +  tv dlk i++ d +
  MMETSP1061-20121228|29342_1 130 QELVGLIPVKKRVKEIAALLVLDKMRRKLGFETAVPSLHMCFTGAPGTGKTTVAVRMGQILAKMGYSRQGHVVLATRDDLVGQYVGHTAPKTKEMIKKSMGGVLLVDEAYYLYNA--ANDRDYGQESIEILLNVMENQQDDLVVALAGYKDRMDKFFSYIPGMMSRIGNHIDFPNYSADELVQIAAVMAHQLEYDIDADAYPVFK-------DYIS------RRMELPFFSNARTVRNAMDRARMNSAIRTFErfaiQGEnGGLCTVHDLKAIQATDFK 393
                  4689*************************************************************************************************************99..77789***********************************************************************999987765444.......4444......366788999999999999999988777654311113333667889999999888865 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   1.7e-07   8.7e-05     244     377 ..      47     190 ..      37     197 .. 0.72

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 1.7e-07
    TIGR00763 244 lGeekdkkdelieklkekleelklpeevlkviekeleklelleasssefsvtrnYldwlt.dlPwgkvske..nldlkrakeiLdedHyglkkvKeRilEylavk.......klrkklkgki....lclvGPPGVGKtSlaksiAkal 377
                  +G ++ +++  + +l+ +l+e++      k+ +  l++ +  e + +e     +Y++ ++ d P g+v +   +  +++  + Ld++  gl  vK+R+ E  a         k     + ++    +c++G PG GKt +a  + + l
  MMETSP1061-20121228|29342_1  47 FGGNEGDDSFKTVRLRDRLNEADTER--RKEEDAALQRERAAEIAREERLAKIAYMNNMAdDTPAGTVDEFmfKEGVQEQLDKLDQELVGLIPVKKRVKEIAALLvldkmrrK--LGFETAVpslhMCFTGAPGTGKTTVAVRMGQIL 190
                  55555555444467777777776544..4555667777778888888888888999999835899888887556779999999*****************9887655554332..222333233349*************98776666 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   7.6e-07   0.00039     138     191 ..     140     194 ..      58     206 .. 0.67

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 7.6e-07
    TIGR01447 138 aalenlfplleeenlqk.vavalalksnfslitGGPGTGKTttvarlllalikqs 191
                  ++++++ +ll   ++++ + +++a+ s  +  tG PGTGKTt+++r+ + l+k  
  MMETSP1061-20121228|29342_1 140 KRVKEIAALLVLDKMRRkLGFETAVPSLHMCFTGAPGTGKTTVAVRMGQILAKMG 194
                  4444444444433333339999*****99*****************977777654 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   4.7e-06    0.0024      11      75 ..     154     221 ..     145     230 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.7e-06
    TIGR02640  11 tsralrylksgypvh..lrGPaGtGktslalhvakkrdrPvvllnGdaelkts.dlvGeeagyerkkv 75 
                  ++r l++  +  ++h  ++G  GtGkt++a+ + + + +     +G   l t  dlvG++ g++  k 
  MMETSP1061-20121228|29342_1 154 MRRKLGFETAVPSLHmcFTGAPGTGKTTVAVRMGQILAKMGYSRQGHVVLATRdDLVGQYVGHTAPKT 221
                  5677777777777884469******************************988537******9987665 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.5   0.3   0.00019     0.096      32     102 ..     168     250 ..     161     364 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00019
    TIGR00635  32 hvllyGPPGlGkttlakiiakelgvklkitsgpa.lekpgDlaailta.........lee..gdvlfiDeihrlskaveelly 102
                  h+ ++G PG Gktt+a  + + l +     +g + l    Dl++             +++  g vl +De + l +a+++  y
  MMETSP1061-20121228|29342_1 168 HMCFTGAPGTGKTTVAVRMGQILAKMGYSRQGHVvLATRDDLVGQYVGhtapktkemIKKsmGGVLLVDEAYYLYNAANDRDY 250
                  9999***********99888877766666665541555566665432101111111122111456666666666666555544 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   3.6     0.011       5.7     136     225 ..     105     193 ..      48     210 .. 0.56
   2 ?    1.6   0.0     0.093        48       5      55 ..     212     265 ..     208     283 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.011
    TIGR03499 136 edperakllkklleagvseel...arelleklke.kedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKTTTlAKLAarfvle 225
                   d ++  + +++ ++gv+e+l    +el+  ++  k+ +e a   +++ +++kl    +e+ + + +  + + G +G GKTT  +++++ ++ +
  MMETSP1061-20121228|29342_1 105 DDTPAGTVDEFMFKEGVQEQLdklDQELVGLIPVkKRVKEIAALLVLDKMRRKL---GFETAVPSLH--MCFTGAPGTGKTTVAVRMGQILAKM 193
                  344555566666677776654111456666666622233333334445555555...6666666666..99***************99877755 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.093
    TIGR03499   5 rfvaktmrealkkvkeelG.....pdavIlstrkvrkgglfskkkvevvaaideee 55 
                   +v+ t  +  +++k+ +G     ++a+ l +   ++    +++++e++  ++e++
  MMETSP1061-20121228|29342_1 212 QYVGHTAPKTKEMIKKSMGgvllvDEAYYLYNAANDRD--YGQESIEILLNVMENQ 265
                  699999999999*****998888889******999999..99999*****999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1387.58
//
Query:       MMETSP1061-20121228|29345_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1891.84
//
Query:       MMETSP1061-20121228|29347_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1205.90
//
Query:       MMETSP1061-20121228|29348_1  [L=887]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (887 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.30
# Mc/sec: 3902.48
//
Query:       MMETSP1061-20121228|29349_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1919.84
//
Query:       MMETSP1061-20121228|29352_1  [L=360]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (360 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.19
# Mc/sec: 2500.85
//
Query:       MMETSP1061-20121228|29351_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.18s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 2465.56
//
Query:       MMETSP1061-20121228|29353_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2789.98
//
Query:       MMETSP1061-20121228|29356_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1235.90
//
Query:       MMETSP1061-20121228|29354_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 2957.38
//
Query:       MMETSP1061-20121228|29355_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-07   27.8  10.2    2.7e-07   27.8   7.1    3.0  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
    0.00022   18.7   0.0    0.00029   18.3   0.0    1.3  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
  ------ inclusion threshold ------
       0.01   13.3   0.0      0.026   12.0   0.0    1.6  1  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -9.2  14.2         3   4.1e+03      24     121 ..      14     111 ..       9     127 .. 0.36
   2 ?   -4.1   6.1      0.94   1.3e+03      70     119 ..     133     181 ..     127     215 .. 0.72
   3 !   27.8   7.1     2e-10   2.7e-07      18     210 ..     174     367 ..     160     383 .. 0.61

  Alignments for each domain:
  == domain 1    score: -9.2 bits;  conditional E-value: 3
    TIGR01622  24 dksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkere..drrerrekeer.lkeelteeeRDart 121
                   k++e++ +++++R+++++  r +  d  ++d  ++   e     +++s+  + +    ++ +++++k ke +   +++++ek e   k +l++ee  a t
  MMETSP1061-20121228|29355_1  14 KKKKEKKERKKEERKKNKK--RKKLDDDDNSDAGQPVAEEIPMDVDNDSSNAKGEAVGDDK-KTKKKKMKEAKsrLKSKKEEKAELmKKVPLKDEEGIAYT 111
                  2333333333333333332..2222222234444444444433333333333332222111.111112222220023333333333244566666655555 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 0.94
    TIGR01622  70 reserererekerrredevrrkrkeredrrerrekeerlkeelteeeRDa 119
                  +e+e +r++e + rre+e + +      r  ++ +++ ++e  te++ D+
  MMETSP1061-20121228|29355_1 133 KEIEEKRQNEARLRREEEAE-LAGLASTRNTVDSNKDDTNETKTEDDSDD 181
                  45566666666557777777.66666666666666666777666666654 PP

  == domain 3    score: 27.8 bits;  conditional E-value: 2e-10
    TIGR01622  18 drdrerdksrersRdrsrdRersrske..rdrdfdr.rdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrrerrekeerlkeelteeeRDartvfvlqlalklreRdlkEFF...skvgkvrdvrlikDrnSrrSkGvaYvEFydvesvqlAlaltGqkllgvPvivqaseAEKNraakaatels 210
                  + + ++d + + + ++ ++ e s++      ++ d+    + d    ++ ++ k  +s++  +  k+r+++ +         d+  +r ++++ k+e    + D++ vfv  l+  ++ + +++FF   ++ g v+ vrl+k    +r  G aY+ F + +  q A+al+G  +    v+  +s+  K  ++k+  e++
  MMETSP1061-20121228|29355_1 174 KTEDDSDDDDDDDDEKGNENEVSNDDGgaICQRVDGpITGKDDGSAKKKVKRNKPVPSDYVCQACKNRHQPAHWI---YDCPDKVTVRGTNKKRKKERGISDPDSKKVFVSGLPFDAKVKAVEDFFavtKNCGTVAAVRLVKFEDTGRCNGQAYISFDTDDGAQRAIALSGTTIDA-AVMSSSSDV-KDSKKKKEDETP 367
                  222222222222222222222222111001223444222233333444444555566667777777666655555...4445566666665556778888889***********************4444679**************************************98754.455555554.333333344444 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.1e-07   0.00029      91     159 ..     277     347 ..     210     389 .] 0.74

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.1e-07
    TIGR01661  91 nlyvsGlPktmtqkeleslfs...pfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsga 159
                   ++vsGlP     k +e +f+   + G + + r+++ + t+  +G  +i fd  + a+rai al Gtt  +a
  MMETSP1061-20121228|29355_1 277 KVFVSGLPFDAKVKAVEDFFAvtkNCGTVAAVRLVKFEDTGRCNGQAYISFDTDDGAQRAI-ALSGTTIDAA 347
                  5789999988888888887753326799999999999999999999999999999999998.4666654332 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.9e-05     0.026     110     175 ..     278     345 ..     257     356 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.9e-05
    TIGR01659 110 livnylpqdmtdr...elyalfrtigpintcrimrdyktgysfgyafvdfaseadsqraikslngitvr 175
                  + v  lp d + +   +++a+ +  g + + r+++   tg   g a++ f ++  +qrai  l g t+ 
  MMETSP1061-20121228|29355_1 278 VFVSGLPFDAKVKaveDFFAVTKNCGTVAAVRLVKFEDTGRCNGQAYISFDTDDGAQRAIA-LSGTTID 345
                  567777777665422257899999***********************************95.7888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       420  (0.102389); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 1510.11
//
Query:       MMETSP1061-20121228|29357_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0025   14.9   0.0     0.0039   14.3   0.0    1.2  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
     0.0099   12.9   0.0      0.017   12.1   0.0    1.3  1  TIGR03576 pyridox_MJ0158: pyridoxal phosphate enzyme, MJ0158 family
  ------ inclusion threshold ------
      0.012   12.6   0.0      0.029   11.4   0.0    1.6  2  TIGR03275 methan_mark_8: putative methanogenesis marker protein 8
      0.015   12.1   0.0      0.027   11.2   0.0    1.4  1  TIGR01822 2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
      0.047   10.4   0.0      0.078    9.7   0.0    1.2  1  TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme


Domain annotation for each model (and alignments):
>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.7e-06    0.0039     178     254 ..     302     381 ..     298     391 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.7e-06
    TIGR01976 178 aaltelvhaaGalvvvDavhya...phaliDvqalgaDllvcsaykff.gPhlGilvvraellkslkpsklefsedegper 254
                  + + e++  +Ga ++vD+ h     + +++D     aD+++  ++k + gP  G+++ r+e ++s+  s+  ++ ++gp+ 
  MMETSP1061-20121228|29357_1 302 KRMREIADTVGAKLMVDMAHISglvAGRVVDSPFQYADIVTTTTHKSLrGPRSGMIFARSEYMESIDSSVF-PMLQGGPHN 381
                  67899***************86222568999999************755*************999987654.344455555 PP

>> TIGR03576  pyridox_MJ0158: pyridoxal phosphate enzyme, MJ0158 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   2.1e-05     0.017     195     227 ..     338     370 ..     298     394 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.1e-05
    TIGR03576 195 aDlvvtstDkLmeGPrgGllaGkkelvdkikse 227
                  aD+v t+t k + GPr+G++  ++e ++ i s 
  MMETSP1061-20121228|29357_1 338 ADIVTTTTHKSLRGPRSGMIFARSEYMESIDSS 370
                  8***************************99876 PP

>> TIGR03275  methan_mark_8: putative methanogenesis marker protein 8
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0         2   1.6e+03     219     234 ..     147     162 ..     137     166 .. 0.62
   2 ?   11.4   0.0   3.5e-05     0.029     175     227 ..     300     353 ..     261     365 .. 0.86

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 2
    TIGR03275 219 askairelakkkallq 234
                  aska+re+++++ + +
  MMETSP1061-20121228|29357_1 147 ASKAVREVLGSCLTNK 162
                  6666666666655444 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 3.5e-05
    TIGR03275 175 dakeirelekeldldvliiavhvtGide.edaeelvkyaDivtsCaskairela 227
                  d k++re+   ++ ++++  +h+ G+   +  ++ ++yaDivt+   k++r   
  MMETSP1061-20121228|29357_1 300 DYKRMREIADTVGAKLMVDMAHISGLVAgRVVDSPFQYADIVTTTTHKSLRGPR 353
                  6799*********************8651567899**************99755 PP

>> TIGR01822  2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   3.3e-05     0.027     190     270 ..     302     377 ..     298     434 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 3.3e-05
    TIGR01822 190 deicalaekydalvlvdechatGflGatGrGsaelldvldkvdiitgtlGkalGGasGGfttakkevvellrqrsrpylfs 270
                  ++++++a+  +a ++vd +h +G++   Gr ++     ++  di+t+t  k+l G   G   a+ e +e +     p l  
  MMETSP1061-20121228|29357_1 302 KRMREIADTVGAKLMVDMAHISGLVA--GRVVDSP---FQYADIVTTTTHKSLRGPRSGMIFARSEYMESIDSSVFPMLQG 377
                  67999*******************95..8887765...66789***********************999887777776655 PP

>> TIGR01437  selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.0   9.5e-05     0.078     200     229 ..     338     367 ..     302     372 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 9.5e-05
    TIGR01437 200 adlviysGakaiegPtsGlvvGkkkyveav 229
                  ad+v  +  k++ gP sG++  + +y+e +
  MMETSP1061-20121228|29357_1 338 ADIVTTTTHKSLRGPRSGMIFARSEYMESI 367
                  9**************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 2696.35
//
Query:       MMETSP1061-20121228|29359_1  [L=515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.11s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2427.66
//
Query:       MMETSP1061-20121228|29360_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 911.15
//
Query:       MMETSP1061-20121228|29360_2  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.35
# Mc/sec: 705.20
//
Query:       MMETSP1061-20121228|29362_1  [L=1207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.10s 00:00:00.59 Elapsed: 00:00:00.43
# Mc/sec: 3704.90
//
Query:       MMETSP1061-20121228|29361_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00038   17.1   0.0     0.0008   16.1   0.0    1.6  1  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
     0.0011   15.2   0.0     0.0013   14.9   0.0    1.1  1  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
  ------ inclusion threshold ------
      0.034   10.8   0.0       0.05   10.2   0.0    1.2  1  TIGR01733 AA-adenyl-dom: amino acid adenylation domain


Domain annotation for each model (and alignments):
>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.0   5.8e-07    0.0008      51     115 ..      74     139 ..      59     223 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5.8e-07
    TIGR03208  51 vrrlsyreldalvdriavglarlgvgrgdvvslqlpnrw.efvalylacarigavlnplmpifrer 115
                   r++   ++d   + +avgl   g++ gdvv   lp ++ e ++l +ac++ g +l  l p +  +
  MMETSP1061-20121228|29361_1  74 NRKWNLHHVDFYSEALAVGLLENGLQPGDVVLSWLPAHFsESMVLQFACSKSGLILYNLDPTLATK 139
                  56777788999999**********************99747899***********99998876544 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   9.5e-07    0.0013      29      99 ..      55     128 ..      37     183 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 9.5e-07
    TIGR02275  29 leeqaakkp..daiaiicgerkfsyrelderadnlaasltklGikkgdtavvqlpn.iaefyivffallklGva 99 
                  l++ a+++p  d +     +rk++ +++d  +++la +l + G++ gd ++  lp   +e  +  fa  k G++
  MMETSP1061-20121228|29361_1  55 LTQLAKENPykDVVRYEFKNRKWNLHHVDFYSEALAVGLLENGLQPGDVVLSWLPAhFSESMVLQFACSKSGLI 128
                  5555555441144555568***********************************95378999999999999975 PP

>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   3.6e-05      0.05       8      81 ..      85     165 ..      80     187 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 3.6e-05
    TIGR01733   8 ranrlAraLkeaggvrpgdrVavllers.velvvailavlkaGaayvpldpeyPa.......eRlaailedakakllltdee 81 
                   +++lA  L e +g++pgd+V  +l+    e +v  +a+ k+G +   ldp+  +       e la+ l+++ka++l+ +e+
  MMETSP1061-20121228|29361_1  85 YSEALAVGLLE-NGLQPGDVVLSWLPAHfSESMVLQFACSKSGLILYNLDPTLATkdpeaakEALAQALTVTKANVLISQEA 165
                  5899******7.56***********9885899*****************987654000011145556666666666665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 1502.65
//
Query:       MMETSP1061-20121228|29364_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1974.34
//
Query:       MMETSP1061-20121228|29363_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-41  140.5   0.0    1.6e-41  140.0   0.0    1.1  1  TIGR01048 lysA: diaminopimelate decarboxylase
    4.8e-19   66.5   0.0    6.7e-14   49.6   0.0    2.1  2  TIGR03099 dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated
    3.4e-08   30.2   0.0    4.8e-08   29.7   0.0    1.1  1  TIGR01273 speA: arginine decarboxylase


Domain annotation for each model (and alignments):
>> TIGR01048  lysA: diaminopimelate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  140.0   0.0   1.2e-44   1.6e-41      33     401 ..     136     511 ..     114     520 .. 0.85

  Alignments for each domain:
  == domain 1    score: 140.0 bits;  conditional E-value: 1.2e-44
    TIGR01048  33 etlrerlealkeafkaees.lvlYAvKAnsnlavlrllaeeGlgldvvsgGEleralaAgvkaekivfsgngkseeeleaale....leiklinvdsveelelleeiakelgkkarvllRvnpdvdaktheyisTGlkesKFGieveeaeeayelalkleslelvGihvHIGSqildlepfveaaekvvklleelkee....gie..leeldlGGGlg..isyeeeeeapdleeyaeklleklekea.elglklklilEpGRslvanagvlltrVesvKevesrkfvlvDagmndliRpalYeayh..eiaalkrleeeetetvdvvGplCEsgDvlakdrelpeveeGdllavasaGAYgasmssnYnsrprpaevlveegkar 401
                  +t r+ l++lkeaf+++ + l + AvK n   a+lr l + G+g+++ s  E++ al+Ag + ekivf   +k+++e++   e    ++i  +nv+s+eele++ e       +  v lR+np vd+ t e  +   +esKFG  + ++e+++e+++k +   ++ +hvH G +++dl++ v a++ vv++  e ++     gi+  +  +d+GGGl   i   e+ +     + ++  +++l+k a +l  ++kl+ E G      +g+   ++e+  ++e+++ + +  g   ++R +  +     +  ++ +  ++++e +d++GplC +gD l + + +p+ eeGd +++ ++G  ++ + s+  sr+ p ++ v+ ++ +
  MMETSP1061-20121228|29363_1 136 TTHRKYLTHLKEAFADHPNaLHAIAVKTNPHPAILRQLVAWGFGMECASMEEVYLALNAGCPGEKIVFDSPVKTKHEIRICHEnpelHGIL-VNVNSLEELERIPENP-----NFVVGLRINPLVDTGTPEIFQVSGNESKFGTPICSKEAIMEAIAKYP---VTQLHVHSGTAMEDLSEAVGAIQSVVEFGVEANAMleskGIDrrIVGVDIGGGLRpeILGAEDSDYGANLSRMQYYVRELRKVApALWDSMKLVTEFGQWSYFYSGYAYSQIEYALQREQTRVAYIHLGADMFLRDIYTGKGRgiDFLPVGEAAHRPQEMTDIAGPLCFAGDYLRQHVMMPRFEEGDEVLMLNTGSNAFGLWSRHCSRTVPQVIGVDRESET 511
                  566788999******96555999*******************************************************9887633334564.9999999999995433.....556*******************************8888888888777...8889**********************9987765545556665226779******63344344444444445566677788888878888*******************************99999999*999***8655544411456788999*******************************************************9999999877655 PP

>> TIGR03099  dCO2ase_PEP1: pyridoxal-dependent decarboxylase, exosortase A system-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.6   0.0   4.9e-17   6.7e-14      39     277 ..     142     388 ..     127     409 .. 0.76
   2 !   14.9   0.0   1.7e-06    0.0023     339     377 ..     447     485 ..     438     493 .. 0.89

  Alignments for each domain:
  == domain 1    score: 49.6 bits;  conditional E-value: 4.9e-17
    TIGR03099  39 vaalrkalpeela.lh.yalkanPmaaLlahlaelvdGlDvasagelklaldtGvdpekisfaGPGktdaeleaaiaa....gvllnveslrelarvaalaeklglrarvavrvnPdfelkssg.lkmgGgakqfGiDaeqvpevlakikaadldfkGlhifaGsqaLkaeaiieaqaktlalalela...keapap..vrvlniGGGfGvpyf...egeeeldlakvadalaalleklkealpevelileLGr 277
                  +++l++a+ ++ + lh  a+k nP +a+l +l     G++ as +e+ lal++G++ eki f  P kt+ e++ + +     g+l+nv+sl+el+r+ +       +  v +r+nP ++  +   ++++G+ ++fG       +++++i+++ +    lh+++G+   +  + + a + +++  +e     ++++++  +  + iGGG+        + +   +l+++   +++l + +    ++++l+ e+G+
  MMETSP1061-20121228|29363_1 142 LTHLKEAFADHPNaLHaIAVKTNPHPAILRQLVAWGFGMECASMEEVYLALNAGCPGEKIVFDSPVKTKHEIRICHENpelhGILVNVNSLEELERIPENP-----NFVVGLRINPLVDTGTPEiFQVSGNESKFGTPICSKEAIMEAIAKYPV--TQLHVHSGTAMEDLSEAVGAIQSVVEFGVEANamlESKGIDrrIVGVDIGGGLRPEILgaeDSDYGANLSRMQYYVRELRKVAPALWDSMKLVTEFGQ 388
                  56677777665441332589****************************************************98765333339*************98654.....45799********98765269**********99999999999998876..5799****998887777888888777655433233666655115557899998633321113344566666666666666666666666777777766 PP

  == domain 2    score: 14.9 bits;  conditional E-value: 1.7e-06
    TIGR03099 339 reevsivGpLCtPLDlladkvelpkaeaGDlvvifqsGa 377
                  +e + i GpLC   D l ++v++p+ e+GD v ++++G+
  MMETSP1061-20121228|29363_1 447 QEMTDIAGPLCFAGDYLRQHVMMPRFEEGDEVLMLNTGS 485
                  68899*******************************996 PP

>> TIGR01273  speA: arginine decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   3.5e-11   4.8e-08      96     292 ..     160     350 ..     141     371 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 3.5e-11
    TIGR01273  96 PiKvnqqrevveelvasggkslGLEaGsKpEllialalaekpkavivcn.GyKDreyielaliarklglkvviviekleEldlvieeakklgvkPklGlRvr.LaskgsgkwassgGeksKFGLsasqvlevvkklkeedlldslkllHfHlGsqianiddvkkgvrEaarlyve....lrklGvk..ievvdvGGGLgvdYdGt 292
                   +K n + +++++lva g   +G+E  s  E+ +al   + p+  iv     K +  i++     +l + +++ ++ leEl+ + e  +      ++GlR+  L  +g+ +  + +G++sKFG       ++++ + +      +  lH+H G  + ++++   +++  +++ ve    l+  G++  i  vd+GGGL  +  G+
  MMETSP1061-20121228|29363_1 160 AVKTNPHPAILRQLVAWG---FGMECASMEEVYLALNAGC-PGEKIVFDsPVKTKHEIRICHENPEL-HGILVNVNSLEELERIPENPN-----FVVGLRINpLVDTGTPEIFQVSGNESKFGTPICSKEAIMEAIAKY----PVTQLHVHSGTAMEDLSEAVGAIQSVVEFGVEanamLESKGIDrrIVGVDIGGGLRPEILGA 350
                  589*************97...****************999.77777776269********9999998.89************9977654.....368****7699999999999*********8766655555555444....46669************9999999888888773332555699877999*******7666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 2089.20
//
Query:       MMETSP1061-20121228|29367_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1367.41
//
Query:       MMETSP1061-20121228|29366_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.2e-73  243.8   0.0    5.4e-44  148.5   0.0    2.4  2  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    3.4e-22   76.6   0.0    1.1e-11   42.2   0.0    3.2  3  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
      0.002   15.7   0.0      0.017   12.7   0.0    2.1  2  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.5   0.0     4e-47   5.4e-44       3     197 ..     118     349 ..     116     354 .. 0.90
   2 !   92.8   0.0   3.6e-30   4.9e-27     191     293 ..     369     470 ..     352     474 .. 0.89

  Alignments for each domain:
  == domain 1    score: 148.5 bits;  conditional E-value: 4e-47
    TIGR00005   3 qegqrldevlase.lkdlsrskikklieegqVkvnkkkv......tanlklkikdgdlvtveveee.eeaevpvedkpldilfeDedilvidKPsglvvhptggyekntvlnallahlkeel.............................vsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefkskegtvdaplarvenkkglvavakss.gke 197
                   +g+r+d vl+++ +++lsrs++ +l+++g+V++  ++        + +++k+++g ++ v+++++ ++ e ++++ pl+il+eDe+++vi+K +g+vvhp++g+ ++tv+nal++ l +e                                r++ivhRLD++T+G+l+v+kt  al++L+e++ +++vkk+Y a+  g++  k + +d+p++r++ ++++++v+++   k+
  MMETSP1061-20121228|29366_1 118 LKGKRIDAVLSKLmIPELSRSACGNLVADGCVEIVTNDGtedavlLNRKAFKVEAGMTLRVTLPKNeRPDEIIAQNLPLKILYEDEHMIVINKEAGMVVHPAAGNWDGTVVNALAYYLANESpfgagdfvgkdgttgsnenssdefddevtSLRPGIVHRLDKGTTGVLIVSKTADALAKLSEAFASRKVKKTYLAVTVGNPG-KRVRIDKPIGRHPIHRQRMRVVPDPhRKN 349
                  689*******996269****************9854443001111456789*************997889999**********************************************8779**************************86699**********************************************665.999*******************9875555 PP

  == domain 2    score: 92.8 bits;  conditional E-value: 3.6e-30
    TIGR00005 191 akss.gkeavTvfkvlerdekaslvelkllTGRtHQiRVHlqylghplagDplYgnksvkgksleaeaklkrqaLhaselgfthpatgelleleaplpedlkel 293
                   + + g++a ++ ++l++d+k slv+++++TGRtHQiRVHlq  + p++gD++Yg  s ++k l + +  +r +Lha++l+  hp+tge l + ap+ +d+  +
  MMETSP1061-20121228|29366_1 369 PS-QsGRRALSFVDTLQFDGKLSLVQVRIETGRTHQIRVHLQDRHTPIYGDDVYGI-SDWNKRLLKAHGIERPLLHAHRLEIDHPITGEPLVFVAPMAADMISI 470
                  33.35**************************************************8.77789999999*********************************876 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.2   0.0   0.00042      0.57       2      28 ..     196     222 ..     195     239 .. 0.80
   2 !   42.2   0.0   8.2e-15   1.1e-11      46      94 ..     274     322 ..     257     328 .. 0.93
   3 !   23.4   0.0   4.7e-09   6.4e-06     127     181 ..     383     436 ..     346     458 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.00042
    TIGR01621   2 leilfrhsdfvlinksegisvhkddge 28 
                  l+il++ + +++ink+ g+ vh   g+
  MMETSP1061-20121228|29366_1 196 LKILYEDEHMIVINKEAGMVVHPAAGN 222
                  689*******************87764 PP

  == domain 2    score: 42.2 bits;  conditional E-value: 8.2e-15
    TIGR01621  46 lvhrldkvtsGilllalnaesaselsrlfaekkikktylalsdkkpkkk 94 
                  +vhrldk t+G+l++++ a++ ++ls+ fa +k+kktyla++   p k+
  MMETSP1061-20121228|29366_1 274 IVHRLDKGTTGVLIVSKTADALAKLSEAFASRKVKKTYLAVTVGNPGKR 322
                  79***************************************99999886 PP

  == domain 3    score: 23.4 bits;  conditional E-value: 4.7e-09
    TIGR01621 127 vsiaeklrlfilkphtGkthqlrvalkslGsailGdslygkaeesdrtylhafkl 181
                  +  + kl l  ++ +tG+thq+rv l+   ++i Gd +yg ++  ++  l a  +
  MMETSP1061-20121228|29366_1 383 LQFDGKLSLVQVRIETGRTHQIRVHLQDRHTPIYGDDVYGISD-WNKRLLKAHGI 436
                  55667888999999*************************9743.33334444333 PP

>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.3e-05     0.017      28      75 ..     269     318 ..     252     326 .. 0.77
   2 ?    0.1   0.0     0.096   1.3e+02     111     125 ..     391     405 ..     361     413 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
    TIGR00093  28 gkklaavGRLDrdseGlllltddgelqhrlth..pekevektYlvqvegs 75 
                  + +   v RLD+ ++G+l++++  +  ++l +  ++++v+ktYl+   g+
  MMETSP1061-20121228|29366_1 269 SLRPGIVHRLDKGTTGVLIVSKTADALAKLSEafASRKVKKTYLAVTVGN 318
                  55555688******************9**987335899*****9765555 PP

  == domain 2    score: 0.1 bits;  conditional E-value: 0.096
    TIGR00093 111 klrvtlteGrnrqvr 125
                   ++v +  Gr +q+r
  MMETSP1061-20121228|29366_1 391 LVQVRIETGRTHQIR 405
                  57899*********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 1800.18
//
Query:       MMETSP1061-20121228|29365_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-25   87.2   0.5    1.3e-24   85.0   0.0    2.0  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.6e-17   60.3   0.4    2.6e-17   60.3   0.3    1.6  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.0   0.0   6.6e-28   1.3e-24       2     104 ..     141     243 ..     140     270 .. 0.84
   2 ?   -0.0   0.0     0.047        97      91     155 ..     343     413 ..     309     422 .. 0.58

  Alignments for each domain:
  == domain 1    score: 85.0 bits;  conditional E-value: 6.6e-28
    TIGR02349   2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYDqfghagleggagg.ggagfegfeasefgdigdifeeffgggg 104
                  YY++Lgv  dA e++ik+AY  +a+k+HPD+n+ ++ea+ekf+ei eAy+vL de+ r  YD+ g++gl+++++  + ++++ + + +f   +d f+++ g+ +
  MMETSP1061-20121228|29365_1 141 YYDVLGVAVDAPESKIKRAYYIQARKWHPDKNP-SEEAKEKFQEIGEAYQVLGDEKLRTIYDREGEEGLSADKTDaSLDNVDPSLIFTFLFGNDSFNDIVGRLQ 243
                  *********************************.99*********************************99766523445555555566667788888877654 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.047
    TIGR02349  91 d....igdifeeffgggggsgrrrskarrged..levelelsleeavkGvekeielerkekCetCkGsGak 155
                  +     ++ f++ fg+++ ++ + +++++ge+  l   +++  + +v  ++++i+   ++ C++ + sG  
  MMETSP1061-20121228|29365_1 343 EglaaKKEGFDMKFGAMKDAQDAARQTQEGENdaLPSMVNMMWSITVIDITTTIKEVVQKVCKDNSVSGEI 413
                  33343667788888877776666444444444013344555555566666677777778888876666654 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.3   1.3e-20   2.6e-17       3      78 ..     140     215 ..     138     246 .. 0.84
   2 ?   -2.4   0.2      0.11   2.3e+02     349     382 ..     406     439 ..     363     469 .. 0.57

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1.3e-20
    TIGR03835   3 DyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDreddld 78 
                   yy+vLg+  Da e+ ik+a+   a+k+hPD+n   +a++ f+ei ea++vL + k r  yD+ G +G+  ++  +
  MMETSP1061-20121228|29365_1 140 KYYDVLGVAVDAPESKIKRAYYIQARKWHPDKNPSEEAKEKFQEIGEAYQVLGDEKLRTIYDREGEEGLSADKTDA 215
                  5*******************************************************************97765444 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.11
    TIGR03835 349 vdqiqeelkktkeieveelptkkadlveievddl 382
                   + ++ e +k  +i+++el    a ++  + d+ 
  MMETSP1061-20121228|29365_1 406 DNSVSGEIQKKRAIAIKELGFMWATMEAKNKDEK 439
                  3344455555555555555555554444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 2072.23
//
Query:       MMETSP1061-20121228|29368_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-23   80.1   0.1    3.2e-22   76.8   0.1    2.0  2  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    3.6e-23   80.0   0.2    6.6e-21   72.6   0.0    2.3  2  TIGR00231 small_GTP: small GTP-binding protein domain
    6.9e-11   39.5   0.4    0.00018   18.4   0.0    3.0  3  TIGR03156 GTP_HflX: GTP-binding protein HflX
    1.5e-09   35.3   0.2    9.2e-08   29.4   0.1    2.2  2  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
    2.4e-09   34.5   0.0    4.6e-06   23.7   0.0    2.2  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    1.5e-08   32.0   3.4    2.3e-06   24.8   0.5    2.8  2  TIGR00092 TIGR00092: GTP-binding protein YchF
      3e-07   27.9   0.1    5.8e-07   27.0   0.0    1.5  2  TIGR00436 era: GTP-binding protein Era
    3.5e-07   27.1   0.0    7.1e-07   26.1   0.0    1.5  1  TIGR00437 feoB: ferrous iron transport protein B
    1.8e-06   24.9   0.1     0.0038   13.9   0.0    2.3  2  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    5.4e-06   23.8   0.2    3.7e-05   21.1   0.1    2.2  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
     0.0068   13.4   0.1      0.013   12.5   0.1    1.4  1  TIGR00750 lao: LAO/AO transport system ATPase
  ------ inclusion threshold ------
      0.019   12.5   0.3        0.7    7.4   0.0    2.9  3  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC


Domain annotation for each model (and alignments):
>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.1   9.4e-25   3.2e-22     127     284 ..      40     191 ..       8     233 .. 0.84
   2 ?    1.1   0.0       0.1        35     277     327 ..     251     295 ..     245     297 .. 0.75

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 9.4e-25
    TIGR02729 127 kfksstnraPrkaekGeegeerelkleLklladvglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvveveeeksfvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyseeLaekpelvvlnkid 284
                  k+ks+  + P  ++ G++  er   +     + +glvG+p++GkStll++++ ++++ a+Y+FtTl+   G ++++   ++ + D+Pg+iega+ g+g G + +     ++++l ++d  +     pv++ ++ie+eL  +  ++++ p  v + k +
  MMETSP1061-20121228|29368_1  40 KLKSELINGPGGKSAGTKNAERGFDVTKSGDTRIGLVGFPSVGKSTLLTSLTGTRSEAAAYEFTTLTCIPGTMKYKG-ARIQVLDLPGIIEGAAGGRGRGRQVISTARTCNLILIVLDSGK-----PVTHKKIIESELFGFGIRINQVPPKVKIMKKE 191
                  566777777788888888888888888888889*******************************************9.999***********************************99765.....69999999999999999988877666655555 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.1
    TIGR02729 277 lvvlnkidlleeeeleellkelkeelekkvlaisaltkegleellkkllel 327
                  l v+nkid+++ eel+     + +++  +++ +s+ +k +leel++++++ 
  MMETSP1061-20121228|29368_1 251 LYVFNKIDAITIEELD-----ILDQM-PNYVPVSSQHKWNLEELMEEIWHR 295
                  5688999998744443.....33333.577899*************99976 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.6   0.0   1.9e-23   6.6e-21       3     117 ..      70     178 ..      68     195 .. 0.93
   2 !    5.4   0.0    0.0091       3.1      84     160 ..     224     290 ..     192     294 .. 0.66

  Alignments for each domain:
  == domain 1    score: 72.6 bits;  conditional E-value: 1.9e-23
    TIGR00231   3 eikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiil 117
                  + +i++vG+++vGKstLl sl+++  s+ ++++++t + ++  ++++G  +++++lD++G ++ +a  r + r+v + +++++++++vld  +++  ++k+i+ e+   g++i++
  MMETSP1061-20121228|29368_1  70 DTRIGLVGFPSVGKSTLLTSLTGTR-SEAAAYEFTTLTCIPGTMKYKG--ARIQVLDLPGIIEGAAGGRGRGRQVISTARTCNLILIVLDSGKPV-THKKIIESELF--GFGIRI 178
                  679**********************.**********************..99*******************************************.9*****99987..777766 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0091
    TIGR00231  84 vdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkddlktkvkslfaklnaep.iielsaetgknidklfk 160
                  ++i    +  e++ ++q   +i+ ++ + +p + v+nKiD  +       ++++ l + p ++++s ++  n+++l++
  MMETSP1061-20121228|29368_1 224 AEI----ILREDITTDQFIDVIEGNR-SYIPCLYVFNKIDAIT------IEELDILDQMPnYVPVSSQHKWNLEELME 290
                  333....3347788788888888888.89************99......55555555555577777777777776665 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.1      0.38   1.3e+02     158     179 ..       6      27 ..       3      31 .. 0.86
   2 !   18.4   0.0   5.3e-07   0.00018     185     237 ..      66     118 ..      30     170 .. 0.75
   3 !   17.7   0.0   8.3e-07   0.00028     300     348 ..     246     293 ..     223     296 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.38
    TIGR03156 158 lirerikklkkelekvekqree 179
                   i+++i++l++e+++ +k++++
  MMETSP1061-20121228|29368_1   6 SIEKKIQELENEMARTQKNKAT 27 
                  5999*********999999876 PP

  == domain 2    score: 18.4 bits;  conditional E-value: 5.3e-07
    TIGR03156 185 kksevptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeee 237
                  +ks   +++lvG+   GKstll +lt+++  a+   F+TL     ++k++ ++
  MMETSP1061-20121228|29368_1  66 TKSGDTRIGLVGFPSVGKSTLLTSLTGTRSEAAAYEFTTLTCIPGTMKYKGAR 118
                  4667789*********************************9887777776654 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 8.3e-07
    TIGR03156 300 eeipvllvlNkidkleeeeleeleekkeeavlvsAkkgegleeLleaie 348
                  + ip+l+v+Nkid+++ eel+ l++  ++ v vs++++++leeL+e+i 
  MMETSP1061-20121228|29368_1 246 SYIPCLYVFNKIDAITIEELDILDQM-PNYVPVSSQHKWNLEELMEEIW 293
                  4579************9999988775.99****************9985 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.1   2.7e-10   9.2e-08     210     309 ..      71     167 ..       7     172 .. 0.88
   2 ?    4.0   0.0     0.013       4.5     301     360 ..     231     293 ..     212     339 .. 0.70

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 2.7e-10
    TIGR00450 210 lklaivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedleleGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDaskpltkddeli 309
                   ++ +vG + vGKS Ll  l    r+  ++++ tt  ++ + ++ +G  +++lD  Gi e a      G ++  +++++++l+l vlD  kp t+++ +i
  MMETSP1061-20121228|29368_1  71 TRIGLVGFPSVGKSTLLTSLT-GTRSEAAAYEFTTLTCIPGTMKYKGARIQVLDLPGIIEGAAGGRGRG-RQVISTARTCNLILIVLDSGKPVTHKK-II 167
                  5799*************9865.569999********************************999877777.6688999***************97765.44 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.013
    TIGR00450 301 pltkdd.eliitlkkkkkdlllvlNKiDLaeleilkse.lkltvsllsa.kqlkikelvdllt 360
                  + t d+   +i+ +++  ++l v+NKiD ++ e+l     + +++ +s  ++ + +el++ + 
  MMETSP1061-20121228|29368_1 231 DITTDQfIDVIEGNRSYIPCLYVFNKIDAITIEELDILdQMPNYVPVSSqHKWNLEELMEEIW 293
                  455555233677899999**********99555544320233444444303345556666555 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.4e-08   4.6e-06       3      95 ..      73     163 ..      35     172 .. 0.79
   2 !    8.9   0.0   0.00043      0.15     100     160 ..     237     296 ..     191     310 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.4e-08
    TIGR03594   3 vaivGrpNVGKStLfNrlvkkr.kAivedtpgvTRDrkygeaelkgkefiliDTgGleeeedelekeireqaelaieeadvilfvvdareglte 95 
                  + +vG p VGKStL+  l+++r +A   ++  +T     g++++kg +++++D +G+ e +++  +   +q+  + +++++il v+d  + +t+
  MMETSP1061-20121228|29368_1  73 IGLVGFPSVGKSTLLTSLTGTRsEAAAYEFTTLT--CIPGTMKYKGARIQVLDLPGIIEGAAGG-RGRGRQVISTARTCNLILIVLDSGKPVTH 163
                  7789999999999999999888445555555555..7889999999999999999996666664.44456777778889999999988776665 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00043
    TIGR03594 100 iaklL..rkskkpvilvvNKvdnkkeeaeaaefyslGlgevlaiSaehgrgikdLldeileel 160
                  +++++  ++s  p++ v NK+d  + e+   ++    + +++++S++h+ ++++L++ei +++
  MMETSP1061-20121228|29368_1 237 FIDVIegNRSYIPCLYVFNKIDAITIEEL--DILD-QMPNYVPVSSQHKWNLEELMEEIWHRC 296
                  5555511344479999******9954443..3332.4789******************98765 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1       1.6   5.4e+02      22      36 ..      18      32 ..       5      45 .. 0.43
   2 !   24.8   0.5   6.7e-09   2.3e-06       4     105 ..      72     155 ..      70     170 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 1.6
    TIGR00092 22 itkaklgeaanyPfa 36
                 +++++ ++a ny   
  MMETSP1061-20121228|29368_1 18 MARTQKNKATNYHLG 32
                 223333333333333 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 6.7e-09
    TIGR00092   4 kaGivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnvpderldkLaeivksekvvpttlefvDiaGLvkGaskGeGLGnkfLaniRevdaivhvv 105
                  + G+vG p vGkstl  ++t ++  eaa y f+t+    g+                  k   ++++++D+ G+++Ga+ G+G G + ++  R  ++i+ v 
  MMETSP1061-20121228|29368_1  72 RIGLVGFPSVGKSTLLTSLTGTRS-EAAAYEFTTLTCIPGT-----------------MKYKGARIQVLDLPGIIEGAAGGRGRGRQVISTARTCNLILIVL 155
                  679*******************99.********98665444.................45556778899999999999999999999999999999998775 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   1.7e-09   5.8e-07       2      99 ..      72     167 ..      71     204 .. 0.87
   2 ?   -3.3   0.0       2.8   9.6e+02     133     159 ..     266     292 ..     254     308 .. 0.68

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 1.7e-09
    TIGR00436   2 fvailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasqiifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknkedell 99 
                  +++++G p+vGKSTLl +l+g  +        TT+  i g +  +  +i  +D PG+ e   + ++   +++ ++ +  +lil v+ds +   + +++
  MMETSP1061-20121228|29368_1  72 RIGLVGFPSVGKSTLLTSLTGTRSEA-AAYEFTTLTCIPGTMKYKGARIQVLDLPGIIEG-AAGGRGRGRQVISTARTCNLILIVLDSGKPVTHKKII 167
                  79*******************99875.67899*************************875.5677888899999999999999999998876665555 PP

  == domain 2    score: -3.3 bits;  conditional E-value: 2.8
    TIGR00436 133 asllefkeiveisalkgenveelkaiv 159
                   +l +  + v++s +++ n+eel + +
  MMETSP1061-20121228|29368_1 266 DILDQMPNYVPVSSQHKWNLEELMEEI 292
                  444444477888888888888877665 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   2.1e-09   7.1e-07       1      52 [.      77     128 ..      77     158 .. 0.91

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 2.1e-09
    TIGR00437   1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkgedieivDlPGiY 52 
                  G p vGKstl+  Ltg++ + + +  +T     g++++kg +i++ DlPGi 
  MMETSP1061-20121228|29368_1  77 GFPSVGKSTLLTSLTGTRSEAAAYEFTTLTCIPGTMKYKGARIQVLDLPGII 128
                  6799**********************************************95 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.1e-05    0.0038       4     107 ..      67     167 ..      64     223 .. 0.81
   2 !    8.9   0.0   0.00037      0.13     112     167 ..     244     296 ..     219     318 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.1e-05
    TIGR03918   4 kaerlhialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeaeleeleeel 107
                  k+  ++i+l+G   +GKS+l+  ltg+  +  + ++ tT   +  +m  +    + ++D +G+ + ++ G+ R ++  ++ ++++l+l+v+d+ + + + ++ +
  MMETSP1061-20121228|29368_1  67 KSGDTRIGLVGFPSVGKSTLLTSLTGTR-SEAAAYEFTTLTCIPGTMKYKG-ARIQVLDLPGIIEGAAGGRGRGRQVISTARTCNLILIVLDSGK-PVTHKKII 167
                  566789*******************986.5567888999999999999876.479999**********************************994.44444444 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00037
    TIGR03918 112 kekkipvivvlnkidlkeeekekeklekkkeeevvlvsakekegieelkealiell 167
                  ++  ip+++v+nkid+ + e   e +   +  ++v vs+++k+++eel e++ +++
  MMETSP1061-20121228|29368_1 244 NRSYIPCLYVFNKIDAITIE---ELDILDQMPNYVPVSSQHKWNLEELMEEIWHRC 296
                  45679***********9985...67777788899*****************98775 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   1.1e-07   3.7e-05     103     174 ..      52     128 ..       2     132 .. 0.70
   2 ?   -0.4   0.0      0.37   1.3e+02      50      69 ..     249     268 ..     236     304 .. 0.69

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.1e-07
    TIGR03596 103 kekkeklkakglkkka...iralvvGiPNvGKStliNrlakkkvakvg.nkpgvTksqqwiklsk.eleLlDtPGil 174
                  k+  +k++++g+  ++   +r+  vG+P vGKStl+ +l++ ++  ++ +   +T    ++k++  ++++lD PGi+
  MMETSP1061-20121228|29368_1  52 KSAGTKNAERGFDVTKsgdTRIGLVGFPSVGKSTLLTSLTGTRSEAAAyEFTTLTCIPGTMKYKGaRIQVLDLPGII 128
                  45556777788764433349********************987766651557889998899886449********97 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.37
    TIGR03596  50 prlivlnkaDladpektkkw 69 
                  p+l+v+nk D +  e+ + +
  MMETSP1061-20121228|29368_1 249 PCLYVFNKIDAITIEELDIL 268
                  8999*****99988877643 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   3.8e-05     0.013      31      55 ..      68      91 ..      64     104 .. 0.84

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.8e-05
    TIGR00750 31 tGrahvvGltGvPGaGkstlvekli 55
                 +G + ++Gl G+P +Gkstl+  l+
  MMETSP1061-20121228|29368_1 68 SGDT-RIGLVGFPSVGKSTLLTSLT 91
                 5554.79**************9987 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.1       1.2   4.2e+02     112     144 ..       9      43 ..       6      47 .. 0.64
   2 ?    7.4   0.0     0.002       0.7      14      46 ..      66      98 ..      56     127 .. 0.81
   3 ?    1.7   0.0      0.11        39     156     185 ..     263     292 ..     231     293 .. 0.73

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 1.2
    TIGR03598 112 helkelDlellellkeakipvlv..vltKaDklkk 144
                  ++++el++e+ ++ k++++++++  +  K+ klk+
  MMETSP1061-20121228|29368_1   9 KKIQELENEMARTQKNKATNYHLgtLKAKIAKLKS 43 
                  56788888888888777666654226666666665 PP

  == domain 2    score: 7.4 bits;  conditional E-value: 0.002
    TIGR03598 14 pedklpeiafaGrSNvGKSsliNaLtnrkklar 46
                  ++  + i ++G   vGKS+l+ +Lt+ ++ a 
  MMETSP1061-20121228|29368_1 66 TKSGDTRIGLVGFPSVGKSTLLTSLTGTRSEAA 98
                 566678899*****************9987765 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.11
    TIGR03598 156 kelkkeeekvevllfSslkkegieelkael 185
                  +el+  +++++++ +Ss++k ++eel++e+
  MMETSP1061-20121228|29368_1 263 EELDILDQMPNYVPVSSQHKWNLEELMEEI 292
                  445555666778888888888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.32u 0.17s 00:00:00.49 Elapsed: 00:00:00.30
# Mc/sec: 1649.86
//
Query:       MMETSP1061-20121228|29369_1  [L=888]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (888 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.38
# Mc/sec: 3084.38
//
Query:       MMETSP1061-20121228|29380_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1573.31
//
Query:       MMETSP1061-20121228|29402_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|29410_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00036   17.9   0.0    0.00038   17.8   0.0    1.2  1  TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family


Domain annotation for each model (and alignments):
>> TIGR00257  IMPACT_YIGZ: uncharacterized protein, YigZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   9.4e-08   0.00038      71     110 ..      18      55 ..       8      91 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 9.4e-08
    TIGR00257  71 sDDgEPagtaGkPmLevlkkedlkdilavvvRYfGGilLG 110
                   DDgE a  aG  +   l  ++ +++l+vv R++GGilLG
  MMETSP1061-20121228|29410_1  18 DDDGEDA--AGGKLAFLLDMRKDENVLVVVSRWYGGILLG 55 
                  6888865..4444444555666689**************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 641.95
//
Query:       MMETSP1061-20121228|29418_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2562.79
//
Query:       MMETSP1061-20121228|29446_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1244.47
//
Query:       MMETSP1061-20121228|29455_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 413.97
//
Query:       MMETSP1061-20121228|29444_1  [L=551]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (551 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 3030.25
//
Query:       MMETSP1061-20121228|29462_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|29494_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1594.87
//
Query:       MMETSP1061-20121228|29505_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|29553_1  [L=744]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.9e-115  382.8   0.0   9.1e-115  382.4   0.0    1.0  1  TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB
     5e-107  356.6   0.1    8.4e-66  220.3   0.0    2.0  2  TIGR02441 fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   1.3e-104  348.8   0.0   1.5e-104  348.5   0.0    1.0  1  TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ
    1.7e-64  216.3   0.0    3.1e-57  192.4   0.0    2.2  2  TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
    3.6e-28   96.6   0.0    5.5e-28   96.0   0.0    1.2  1  TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
    1.4e-19   68.5   0.0    3.5e-19   67.2   0.0    1.6  2  TIGR01929 menB: naphthoate synthase
    4.8e-16   56.7   0.0    1.1e-15   55.5   0.0    1.5  1  TIGR03210 badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
    6.2e-15   53.0   0.0      1e-14   52.3   0.0    1.3  1  TIGR03189 dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
    3.5e-10   37.3   0.0    7.3e-10   36.3   0.0    1.4  1  TIGR03200 dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
    1.1e-08   32.1   0.0    1.5e-08   31.6   0.0    1.1  1  TIGR03222 benzo_boxC: benzoyl-CoA-dihydrodiol lyase
     0.0045   14.0   0.0     0.0074   13.3   0.0    1.3  1  TIGR03911 pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
     0.0058   13.7   0.0      0.009   13.1   0.0    1.2  1  TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
     0.0066   14.2   0.1      0.013   13.3   0.1    1.3  1  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
  ------ inclusion threshold ------
      0.011   12.7   0.7      0.022   11.7   0.1    1.7  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.023   10.9   0.0      0.037   10.2   0.0    1.2  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
      0.027   11.4   0.1       0.04   10.8   0.1    1.2  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR02437  FadB: fatty oxidation complex, alpha subunit FadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  382.4   0.0  3.6e-117  9.1e-115      36     677 ..      28     685 ..       6     718 .. 0.84

  Alignments for each domain:
  == domain 1    score: 382.4 bits;  conditional E-value: 3.6e-117
    TIGR02437  36 lasldkaldalkaqsdlkgllltsdkdafivGaditeflelfakpeeellqwlee...ansvfnkledlpvptvaavkGfalGGGlevvlatdfriadktakiGlpetklGilpGfGGtvrlprliGadsaleiiaaGkevraedalkvglvdavvkae..kleaaalqllkdainekldykakrqrkleklklskleammsftiakGlvaqvaGkhypapvtavktiekaarfgreealeiekkafvk.la.k..teeakalvGlflndqyvkgkakkaa...klakkvkqaavlGaGimGGGiayqsaskGvpvvmkdiaeksldlGlteaakllnkqlerGkidglklaevlnsitptleyadvdnvdivveavvenpkvkkavlaeveekvredavlasntstisisllakal..krpenfvGmhffnpvhrmplvevirGekssdetiakvvayaskmGktpivvndcpGflvnrvlfpyfaGfskllrdGa.dfakidkvmekkfGwpmGpaylldvvGidtahhaqa...vmaeGf..pdrmkkdrrdaidalf.eakrlGqknGkGfyayevdkkGkpkkev.daevlellkevvaeqrd.fddeeiiarmmiplilevvrcleeGivasaaeadmalvyGlGfppfrGGvlrylds 677
                   + + kald  +a+  + +++l  +   f  Gad+tef ++ ++p  + +++ +e     +v +++e++p p vaa+ G alGGGlev l++ +ri+d+t k Glpe+ +G++pG GGt rlprl+ + +ale+i +Gk   a++a k glvd vv++    l  +a++  + a    ld + +  rk+ k   ++le ++    ak   ++  G+   a ++avk+         +e   +e ++f+k la k      +a+  +    +++  +  k +   +++ +++ aav+GaG+mG Gi     + G  v + d+ ++sld+G++     + + l+rGki+ +k + +++s++pt ++ d+    +vveav+en k+kk++++  ++    d++l sntst+ i+++a ++   r + f+G hff p h m lve++rG  +s et+  +   ++++Gk  +vv +c Gf+ nr+l+ y a  + ll++G+   + +dk + + fG  +Gp  + d+ G+d ++  ++    +++G   p      + +  d++  e +rlGqk GkG+y y+++  Gk +k + ++ev el++  +++ r+ f+++++i+r++ p+++e  +cleeGi   +++ d+  vyG G+p +rGG + + d 
  MMETSP1061-20121228|29553_1  28 RQLIWKALDKAEADEVIGSVILYGGSRNFSAGADLTEFGKVEMNPGTTGSSGGKEffpLPEVVKRIENFPKPVVAAISGNALGGGLEVALSCHYRITDETGKFGLPEVNVGVIPGAGGTQRLPRLVTVIKALEMILSGKPIEAKNAKKFGLVDHVVASSdgSLLDSAKKFANWAELMPLDDR-RVGRKTIKESKQELEMIFKGASAKLPSIERGGEGVWAALNAVKACSLP----IDEGSSVELEQFLKtLAgKqgIARRHAFFAVRKAGKMLGSIRNKHHpllQKSFRTQTAAVIGAGLMGSGICMVLLQAGFTVHLVDVYKESLDKGVAFLKGTIRSYLKRGKISEKKASSMIDSLKPTQKFEDLSSCVLVVEAVIENMKIKKQIFSTLDKITPPDCILLSNTSTLDIDEMASSVsvARRQSFAGWHFFSPAHIMKLVEIVRGAATSMETVCVMQHVTKRVGKIGVVVGNCDGFVGNRLLISYGAETTLLLEEGVaSVSSVDKAFLN-FGIALGPFQMADLAGLDIGYNIRKhrgWVTNGAkaPTNKPARYPEVADIIVsEYNRLGQKTGKGWYDYDKN-VGKGRKPFpSKEVDELIRRYAKSGRApFSEKQMIERVLFPMVNEGFKCLEEGIAMQPSDIDVVYVYGYGWPIYRGGPMYWADN 685
                  455679***************************************99998887662224689**********************************************************************************************98623699999999988877777743.3345555555555665555567788889999*********99876554....455555666666652331200233345666666666655555444411034444567**************************************************************************************************************************9752279999************************************************************************725779****988.******************976543111566665115555556668888765388**************986.577777662678889999888776655*****************************************************996 PP

>> TIGR02441  fa_ox_alpha_mit: fatty acid oxidation complex, alpha subunit, mitochondrial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.3   0.0   3.3e-42   8.4e-40      22     201 ..       6     188 ..       1     222 [. 0.85
   2 !  220.3   0.0   3.3e-68   8.4e-66     328     727 ..     305     717 ..     281     721 .. 0.88

  Alignments for each domain:
  == domain 1    score: 134.3 bits;  conditional E-value: 3.3e-42
    TIGR02441  22 dvavvkidspnsk.vntlskelsaefkevldeletneavksavlisskpgsfvaGadidmlkacktaeevtqlsreaq......klleklekskkpivaaisGsclGGGlelalachyriatkdkktllglpevllGllpGaGgtqrlpklvsvpaaldleltGkkikadrakklGlvdrlvdplGp 201
                    +vv++ +  s   n l+ +l + + + ld+ e++e + s++l  +    f aGad+  +   +    +t  s +++      ++++++e+  kp+vaaisG  lGGGle+al+chyri+  d+  ++glpev +G++pGaGgtqrlp+lv+v +al++ l+Gk i+a +akk+Glvd++v     
  MMETSP1061-20121228|29553_1   6 KTLVVNFSTAGSNpLNPLGYKLRQLIWKALDKAEADEVIGSVILYGG-SRNFSAGADLTEFGKVEMNPGTTGSS-GGKeffplpEVVKRIENFPKPVVAAISGNALGGGLEVALSCHYRIT--DETGKFGLPEVNVGVIPGAGGTQRLPRLVTVIKALEMILSGKPIEAKNAKKFGLVDHVVASSDG 188
                  56788888776653799**********************99887766.567*******9998888777666655.4441333336789*******************************96..88889*****************************************************986544 PP

  == domain 2    score: 220.3 bits;  conditional E-value: 3.3e-68
    TIGR02441 328 fGkperevkelavlGaGlmGaGiaqvsvdkGlktvlkdateagldrGqqqvakglnkkvkkkkltslerdsilsnltatldysafkkadvvieavfedlklkhkvlkeveavvpehciiasntsalpikeiaavss..rpekviGmhyfspvdkmqlleiittdktskdtlasavavGlkqGkvvivvkdgpGfyttrilgpmlaevirllqeGvdp.keldklttkfGfpvGaatlvdevGvdvaehvaedlgkal.GerlgGGs....lellkelvkk.GflGrksGkGifiydegk.kgskkvns.dadeilkklkllakaevssdedlqlrlvsrfvneavlcleegilaspleGdigavfGlGfppflGGpfrfvdl.yGadklvdklkkyeavyg..aqfkpcqllld 727
                    +     ++ av+GaGlmG+Gi+ v ++ G+ + l d  +++ld+G   ++  + + +k+ k+++ +  s++ +l++t  ++++    +v+eav+e++k+k++++  ++ + p++ci+ snts+l i+e+a++ s  r +   G h+fsp + m+l+ei+    ts +t+     v  + Gk+ +vv+++ Gf   r+l +  ae + ll+eGv     +dk   +fG+ +G   ++d  G+d++  + ++ g +  G +    +     e+ + +v++   lG+k+GkG + yd+++ kg+k+  s ++de+++++  + +a   s++++  r++  +vne   cleegi  +p++ d+  v+G G+p + GGp+ ++d+  G + l+ +l+ +++ +     ++p+qll++
  MMETSP1061-20121228|29553_1 305 LLQKSFRTQTAAVIGAGLMGSGICMVLLQAGFTVHLVDVYKESLDKGVAFLKGTIRSYLKRGKISEKKASSMIDSLKPTQKFEDLSSCVLVVEAVIENMKIKKQIFSTLDKITPPDCILLSNTSTLDIDEMASSVSvaRRQSFAGWHFFSPAHIMKLVEIVRGAATSMETVCVMQHVTKRVGKIGVVVGNCDGFVGNRLLISYGAETTLLLEEGVASvSSVDKAFLNFGIALGPFQMADLAGLDIGYNIRKHRGWVTnGAKAPTNKparyPEVADIIVSEyNRLGQKTGKGWYDYDKNVgKGRKPFPSkEVDELIRRYAKSGRA-PFSEKQMIERVLFPMVNEGFKCLEEGIAMQPSDIDVVYVYGYGWPIYRGGPMYWADNdVGLKYLLGRLEDFSKQFPdtDYYRPSQLLKQ 717
                  44555567899************************************************************************************************************************986432389999************************************************************************86368*****************************99999875244443332222257777777652569***********99876999*99762677888777665555.5566777779999******************************************974799************997546799****986 PP

>> TIGR02440  FadJ: fatty oxidation complex, alpha subunit FadJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  348.5   0.0    6e-107  1.5e-104      34     690 ..      31     717 ..       9     729 .. 0.84

  Alignments for each domain:
  == domain 1    score: 348.5 bits;  conditional E-value: 6e-107
    TIGR02440  34 vaeilkqlkekkelrglvlvsgkpdsfiagadismlaacktadeakalaqkgq......ellaelealpikvvaaihgaclggglelalachsrvcsdddktvlglpevqlgllpgsggtqrlprlvgvskaldmiltgkqlrakqalklglvddvvpks..illdvavelakkgklk.rkalslqerllegtalgrallfdlvakktekktrgnypaaerildvvrkglakgmkkgleaearafgelvlskesaalrsiffattelkketgsd...a.....tpaaikkvgvlggglmgggiasvtatkaglpvrikdineqgiknalkyaydlldkkvkrrrlkkaerdkklalisgttdyrgfkevdivveavfedlelkqqmvkdieretaehtifasntsslpigqiaaaa..erpeqviglhyfspvekmplveviphaktseetiattvalakkqgktpivvadkagfyvnrilapyineaarllleg.esvehidkalvdfgfpvgpitlldevgidvgakisp....ileae...lgerfkapavfdkllsd.drkgrkngkgfylygaktk...k....kevdesvykllgvkpeakleasavaercvllmlneavrcldegvirsardgdigavfgigfppflggpfrylds.lgadkvvkilkrlatqyge..rfepcerlva 690
                  + + l+++++ +e+ g v++ g   +f agad++ ++  +    +   +  g+      e++ ++e +p +vvaai g  lgggle+al+ch r+   d+   +glpev++g++pg+ggtqrlprlv v kal+mil+gk + ak+a+k+glvd+vv  s   lld a + a   +l     + +  + ++ +    +++f+ ++ k  +  rg     ++ l+ v+   +   ++g  +e ++f +    k+  a r  ffa  +  k  gs          ++ + + ++v+g glmg gi+ v   +ag+ v + d+ ++ +++ + +   ++    kr ++++ +    + ++  t +++ +++  +vveav+e++++k+q+   +++ t    i+ snts+l i+++a+     r +   g h+fsp + m lve++  a ts et+  +  ++k+ gk  +vv +  gf  nr+l  y  e++ ll eg  sv ++dka+++fg+ +gp+++ d  g+d+g  i      + + +     +  + p+v d ++s+ +r g+k+gkg+y y ++     k    kevde + +  +  ++a  + +++ er  + m+ne  +cl+eg+  ++ d d+  v+g g+p + ggp+ + d  +g + ++  l+++++q+ +   + p + l++
  MMETSP1061-20121228|29553_1  31 IWKALDKAEA-DEVIGSVILYGGSRNFSAGADLTEFGKVEMNPGTT-GSSGGKeffplpEVVKRIENFPKPVVAAISGNALGGGLEVALSCHYRIT--DETGKFGLPEVNVGVIPGAGGTQRLPRLVTVIKALEMILSGKPIEAKNAKKFGLVDHVVASSdgSLLDSAKKFANWAELMpLDDRRVGRKTIKESKQELEMIFKGASAKLPSIERGGEGVWAA-LNAVKA-CSLPIDEGSSVELEQFLKTLAGKQGIARRHAFFAVRKAGKMLGSIrnkHhpllqKSFRTQTAAVIGAGLMGSGICMVL-LQAGFTVHLVDVYKESLDKGVAFLKGTIRSYLKRGKISEKKASSMIDSLKPTQKFEDLSSCVLVVEAVIENMKIKKQIFSTLDKITPPDCILLSNTSTLDIDEMASSVsvARRQSFAGWHFFSPAHIMKLVEIVRGAATSMETVCVMQHVTKRVGKIGVVVGNCDGFVGNRLLISYGAETTLLLEEGvASVSSVDKAFLNFGIALGPFQMADLAGLDIGYNIRKhrgwVTNGAkapTNKPARYPEVADIIVSEyNRLGQKTGKGWYDYDKNVGkgrKpfpsKEVDELIRRY-AKSGRAPFSEKQMIERVLFPMVNEGFKCLEEGIAMQPSDIDVVYVYGYGWPIYRGGPMYWADNdVGLKYLLGRLEDFSKQFPDtdYYRPSQLLKQ 717
                  5555555554.56678888888899*********999887655443.44455512222267899******************************96..666679*****************************************************976447*******9986655413446777888888899999*******9999998887665544.455543.345567777888889999999*******************99996311111111223456789************996.79******************************************************************************************************98651268899***********************************************************************9558*****************************9997522223332200033334568999*999875899***********98755355255559***999765.6789999999**************************************************99649***************965216888887764 PP

>> TIGR02279  PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  192.4   0.0   1.2e-59   3.1e-57       4     289 ..     311     603 ..     309     618 .. 0.90
   2 !   21.7   0.0   6.5e-08   1.7e-05     420     501 ..     638     725 ..     632     727 .. 0.84

  Alignments for each domain:
  == domain 1    score: 192.4 bits;  conditional E-value: 1.2e-59
    TIGR02279   4 svvkvaviGaGamGaGiaqvaaraGhtvllydiraealaravagiekdlkslvekgkldaaeaeatlkrlvPvaalealadaglvieaivenlevkkalfaqleelltadaiiasntsslsitalaag..larPervaGlhffnPaPlmalvevvsGlateaevaetlyetarawGkqPvrarstPGfivnrvarPyyaealrvleeqaaepasldallrdgaGfamGpleltdliGhdvnfavtcs...vfe...afyqdrrfaPslvqkelvaaGrlGrksGrGvyeyaeea 289
                  ++++ aviGaG mG+Gi  v  +aG tv+l d   e+l ++va ++  ++s +++gk++ ++a  ++  l P +++e+l+   lv+ea++en+++kk++f+ l+++ ++d+i+ snts+l i  +a+   +ar +  aG hff Pa +m+lve+v G at  e +  + ++++  Gk  v +    Gf+ nr+   y ae+  +lee++a   s+d ++ +  G a+Gp+++ dl G d+ + + +    v +   a  ++    P +    + +  rlG+k+G+G y+y ++ 
  MMETSP1061-20121228|29553_1 311 RTQTAAVIGAGLMGSGICMVLLQAGFTVHLVDVYKESLDKGVAFLKGTIRSYLKRGKISEKKASSMIDSLKPTQKFEDLSSCVLVVEAVIENMKIKKQIFSTLDKITPPDCILLSNTSTLDIDEMASSvsVARRQSFAGWHFFSPAHIMKLVEIVRGAATSMETVCVMQHVTKRVGKIGVVVGNCDGFVGNRLLISYGAETTLLLEEGVASVSSVDKAFLN-FGIALGPFQMADLAGLDIGYNIRKHrgwVTNgakAPTNKPARYPEVADIIVSEYNRLGQKTGKGWYDYDKNV 603
                  68999************************************************************************************************************************98622689999********************************************************************************98875.79*******************9885332443111222222223444444444679*************8765 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 6.5e-08
    TIGR02279 420 rtvamlaneaadavlkgvasa.rdidtamraGvnyPk...GPlawaaq.lGiarvlrvlenlqehyGe.eryrpssllrrkalkgeal 501
                  r +  ++ne    + +g+a +  did+    G  +P    GP+ wa++ +G++++l  le++ +++ + + yrps+ll+++ + g ++
  MMETSP1061-20121228|29553_1 638 RVLFPMVNEGFKCLEEGIAMQpSDIDVVYVYGYGWPIyrgGPMYWADNdVGLKYLLGRLEDFSKQFPDtDYYRPSQLLKQCVMMGLTV 725
                  6666789***********97648*********998855547*****865****************9872678*********9988776 PP

>> TIGR02280  PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.0   0.0   2.2e-30   5.5e-28      17     199 ..      17     205 ..       3     224 .. 0.89

  Alignments for each domain:
  == domain 1    score: 96.0 bits;  conditional E-value: 2.2e-30
    TIGR02280  17 pdklnsfteemhaelaealerverdd.vrallltGaGrGfcaGqdlsernvtkgaapdlGetvekfynpl...vrrlaalpkpvvvavnGvaaGaGanlalagdivlaaesakfiqafaklGlipdsGGtwllprlvGrarakglallgekldaetaaewGliwqvvd..dealadevqalaahlakqp 199
                   + ln +  ++ + + +al+++e d+ + +++l G  r f+aG dl+e    + ++   G++  k + pl   v+r+ ++pkpvv+a+ G a G G ++al++   ++ e+ kf    +++G+ip +GGt  lprlv + +a  + l g++++a++a+++Gl+ +vv+  d  l d+++++a+     p
  MMETSP1061-20121228|29553_1  17 SNPLNPLGYKLRQLIWKALDKAEADEvIGSVILYGGSRNFSAGADLTEFGKVEMNPGTTGSSGGKEFFPLpevVKRIENFPKPVVAAISGNALGGGLEVALSCHYRITDETGKFGLPEVNVGVIPGAGGTQRLPRLVTVIKALEMILSGKPIEAKNAKKFGLVDHVVAssDGSLLDSAKKFANWAELMP 205
                  5668888889999999**********999********************9999999999999999999976669******************************************************************************************9996335699999999987665555 PP

>> TIGR01929  menB: naphthoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.2   0.0   1.4e-21   3.5e-19      34     187 ..      30     187 ..      17     218 .. 0.89
   2 ?   -3.2   0.0       4.2   1.1e+03     216     240 ..     493     517 ..     466     523 .. 0.60

  Alignments for each domain:
  == domain 1    score: 67.2 bits;  conditional E-value: 1.4e-21
    TIGR01929  34 ellealddaredsdiGvviltGaGdkafcsGGd....qkvrgksGykdesG.esrlnvlevqrlirtlpkpvialvnGyaiGGGhvlhvvcdltiasenarfgqtgpkvGsfdgGyGsaylarivGqkkareifflcrqydaeeaekmGlvnavvelae 187
                   + +ald+a  d+ iG vil G G++ f +G d     kv  + G + +sG ++ + + ev + i  +pkpv+a ++G a+GGG  + + c   i+ e  +fg  + +vG   g  G+  l r+v   ka e+ + ++  +a++a+k Glv++vv  ++
  MMETSP1061-20121228|29553_1  30 LIWKALDKAEADEVIGSVILYG-GSRNFSAGADltefGKVEMNPGTTGSSGgKEFFPLPEVVKRIENFPKPVVAAISGNALGGGLEVALSCHYRITDETGKFGLPEVNVGVIPGAGGTQRLPRLVTVIKALEMILSGKPIEAKNAKKFGLVDHVVASSD 187
                  5789****************99.99********44444788889977666515666788************************************************************************************************8765 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 4.2
    TIGR01929 216 adldGqaGlqelaGeatllfyltee 240
                   ++dG +G ++l  + +    l ee
  MMETSP1061-20121228|29553_1 493 GNCDGFVGNRLLISYGAETTLLLEE 517
                  3566666666666555555555555 PP

>> TIGR03210  badI: 2-ketocyclohexanecarboxyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.5   0.0   4.3e-18   1.1e-15      33     183 ..      30     186 ..      12     204 .. 0.84

  Alignments for each domain:
  == domain 1    score: 55.5 bits;  conditional E-value: 4.3e-18
    TIGR03210  33 elikalkkagydreigvivlagagdkafctggdqst...hdgnydgrgvig....lpveelhsairdvakpviarvqgyaigggnvlvticdltiasekavlgqvgpkvgsvdpgygtallarvvgekkareiwylcrrysakealamglvnavvphd 183
                   + kal+ka+ d  ig+++l g g + f +g d +     + n +  g  g    +p+ e+ + i + +kpv+a + g a+ggg  ++  c + i+ e   +g    +vg +    gt  l r+v   ka e+    +   ak+a+ +glv+ vv   
  MMETSP1061-20121228|29553_1  30 LIWKALDKAEADEVIGSVILYG-GSRNFSAGADLTEfgkVEMNPGTTGSSGgkefFPLPEVVKRIENFPKPVVAAISGNALGGGLEVALSCHYRITDETGKFGLPEVNVGVIPGAGGTQRLPRLVTVIKALEMILSGKPIEAKNAKKFGLVDHVVASS 186
                  4679****************98.899*****99754111333333333333344479*****************************************************9988889************************************99764 PP

>> TIGR03189  dienoyl_CoA_hyt: cyclohexa-1,5-dienecarbonyl-CoA hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.3   0.0     4e-17     1e-14      77     177 ..      85     186 ..      29     199 .. 0.81

  Alignments for each domain:
  == domain 1    score: 52.3 bits;  conditional E-value: 4e-17
    TIGR03189  77 slhklviemldspvpilvavrgqclggglevaaagnllfaapdaklgqpeiklgvfapaasc.llpervgkvaaedllysgrsidgaegariglvdavaedp 177
                   l ++v+++ ++p p++ a+ g+ lgggleva++ +  ++    k+g pe+++gv+  a     lp  v+ + a +++ sg+ i++++++++glvd v+   
  MMETSP1061-20121228|29553_1  85 PLPEVVKRIENFPKPVVAAISGNALGGGLEVALSCHYRITDETGKFGLPEVNVGVIPGAGGTqRLPRLVTVIKALEMILSGKPIEAKNAKKFGLVDHVVASS 186
                  5678899999*********************************************988876526888899999***********************998765 PP

>> TIGR03200  dearomat_oah: 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   0.0   2.8e-12   7.3e-10      63     211 ..      34     184 ..      24     196 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 2.8e-12
    TIGR03200  63 afrrassdrdvaavvftavgdkafctggntkeyaeyyagnpqey.....rqymrlfndmvsailgcdkpvicrvngmrigggqeigmaadlsvaqdlakfgqagpkhgsaaiggatdflplmigceqamvsgtlcepfsahkakrlgiivdvvp 211
                  a+ +a +d  + +v++ + g + f +g +  e+ +    np        ++++  + ++v+ i +  kpv++ + g  +ggg e+ +++ + ++++  kfg      g  +  g t+ lp ++++ +a+    + +p  a  ak+ g++ +vv 
  MMETSP1061-20121228|29553_1  34 ALDKAEADEVIGSVILYG-GSRNFSAGADLTEFGKVEM-NPGTTgssggKEFFP-LPEVVKRIENFPKPVVAAISGNALGGGLEVALSCHYRITDETGKFGLPEVNVGVIPGAGGTQRLPRLVTVIKALEMILSGKPIEAKNAKKFGLVDHVVA 184
                  666777777777766655.8889999999999877543.333320101023333.3689******************************************************************************************99996 PP

>> TIGR03222  benzo_boxC: benzoyl-CoA-dihydrodiol lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.6   0.0     6e-11   1.5e-08     122     239 ..     100     216 ..      91     238 .. 0.75

  Alignments for each domain:
  == domain 1    score: 31.6 bits;  conditional E-value: 6e-11
    TIGR03222 122 flaavnGtaaGGGyelalacdeivlvddrssavslpevpllavlpGtGGltrvtdkrrvrrdladifctieeGvkGkrakewrlvdevvkssk...fd.aavaeraaelaaksdrpadakGv 239
                   +aa+ G a GGG e+al+c++   + d++    lpev  ++v+pG+GG  r+     v + l  i+    + +  k ak++ lvd+vv+ss    +d a+  ++ ael   +dr    k +
  MMETSP1061-20121228|29553_1 100 VVAAISGNALGGGLEVALSCHYR--ITDETGKFGLPEVN-VGVIPGAGGTQRLPRLVTVIKALEMILS--GKPIEAKNAKKFGLVDHVVASSDgslLDsAKKFANWAELMPLDDRRVGRKTI 216
                  69******************975..5789999******8.69***********877777777766665..578****************987522122111112234455555665555555 PP

>> TIGR03911  pyrrolys_PylD: pyrrolysine biosynthesis protein PylD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   2.9e-05    0.0074     135     188 ..     302     355 ..     287     416 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 2.9e-05
    TIGR03911 135 aldllkaglkekdvlviGlGkvGtaaavalvkkGakvyvydkekelleklvkdl 188
                     ll+  ++ +   viG+G +G + ++ l++ G+ v+  d  ke l+k v  l
  MMETSP1061-20121228|29553_1 302 HHPLLQKSFRTQTAAVIGAGLMGSGICMVLLQAGFTVHLVDVYKESLDKGVAFL 355
                  55678888999999********************************99987666 PP

>> TIGR01505  tartro_sem_red: 2-hydroxy-3-oxopropionate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   3.5e-05     0.009       3      42 ..     316     355 ..     314     387 .. 0.89

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.5e-05
    TIGR01505   3 gfiGlGimGkPmsknllkaGyqlvvatleqealdellaaG 42 
                  + iG G+mG+ ++  ll+aG+ ++ +++ +e ld+ +a  
  MMETSP1061-20121228|29553_1 316 AVIGAGLMGSGICMVLLQAGFTVHLVDVYKESLDKGVAFL 355
                  68*******************************9987754 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   4.9e-05     0.013       6     104 ..     297     400 ..     293     417 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.9e-05
    TIGR02354   6 alvarhtekvveklkkasvaiaGlGGlGsnvainlaraGigklilvdf..dvve..psnln...rqqykvsdvGkkktealkeqiseinPyveieiidekideenl 104
                   ++++h + +++ ++  + a+ G G +Gs + + l +aG   + lvd   + ++  ++ l+   r   k  ++ +kk+ ++ + ++  + + ++  + + ++   +
  MMETSP1061-20121228|29553_1 297 SIRNKHHPLLQKSFRTQTAAVIGAGLMGSGICMVLLQAGFT-VHLVDVykESLDkgVAFLKgtiRSYLKRGKISEKKASSMIDSLKPTQKFEDLSSCVLVVEA-VI 400
                  5789***********************************86.56666412455522344543336666788999************99999999988766542.22 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.1   8.6e-05     0.022       2      29 ..     316     343 ..     315     350 .. 0.92
   2 ?   -1.9   0.0       1.2     3e+02     161     215 ..     465     519 ..     451     530 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.6e-05
    TIGR02352   2 lviGgGviGlsvAveLakrghkvtllek 29 
                  +viG+G++G+ + + L+++g+ v+l++ 
  MMETSP1061-20121228|29553_1 316 AVIGAGLMGSGICMVLLQAGFTVHLVDV 343
                  7************************985 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.2
    TIGR02352 161 leklGveiieevevqeieargekvtavktssekvqadqvvlaaGawakellplal 215
                  ++ +  +++  + +q++ +r+ k+  v+++ + +  +++ ++ Ga  + ll+  +
  MMETSP1061-20121228|29553_1 465 VRGAATSMETVCVMQHVTKRVGKIGVVVGNCDGFVGNRLLISYGAETTLLLEEGV 519
                  5555667778888999****************************99988887544 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00014     0.037     134     173 ..     306     345 ..     299     366 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00014
    TIGR02374 134 eaaakrtkkaaviGgGLLGLeaaraLknlGldvsvielap 173
                   + + rt+ aaviG+GL+G      L + G+ v+ +++  
  MMETSP1061-20121228|29553_1 306 LQKSFRTQTAAVIGAGLMGSGICMVLLQAGFTVHLVDVYK 345
                  5667799****************************99765 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   0.00016      0.04       1      39 [.     314     352 ..     314     372 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00016
    TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgAS 39 
                  ++avIGaG+ g+ +   L ++G+ v+l++  ++   ++ 
  MMETSP1061-20121228|29553_1 314 TAAVIGAGLMGSGICMVLLQAGFTVHLVDVYKESLDKGV 352
                  58**************************98887666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (744 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.53u 0.16s 00:00:00.69 Elapsed: 00:00:00.44
# Mc/sec: 2231.82
//
Query:       MMETSP1061-20121228|29569_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 467.04
//
Query:       MMETSP1061-20121228|29567_1  [L=844]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-20   68.9   1.4    1.1e-13   48.7   0.1    3.5  2  TIGR03606 non_repeat_PQQ: dehydrogenase, PQQ-dependent, s-GDH family
    2.8e-05   18.5   0.0    3.7e-05   18.1   0.0    1.0  1  TIGR00864 PCC: polycystin cation channel protein


Domain annotation for each model (and alignments):
>> TIGR03606  non_repeat_PQQ: dehydrogenase, PQQ-dependent, s-GDH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   0.1   5.3e-17   1.1e-13      49     216 ..      49     203 ..      35     212 .. 0.80
   2 !   12.7   0.0   4.4e-06     0.009     208     272 ..     219     289 ..     214     314 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 5.3e-17
    TIGR03606  49 aageilrvnpetGekkvvltlsevsvdaqheGllGlalhpefmkekgndyvyiaytykn...gdkelpd.hakivryeydkatqtledevd..llaGlpagn.dhngGrlkfgpdgkiyytiGeqGrnqganllkpneaqrlptqeeldakdyaayaGkvlrlnldGsipednpe 216
                     ++ r   e+ +++ +l l +      ++G+  +a hp+f    +n+++yi yt  +    ++e+   ++++ r++ d +t ++ +e +  l+ G p+ +  hngG +kfg dgkiy t G+ G +  +                  ++d +   G +lrln dG++p+dnp 
  MMETSP1061-20121228|29567_1  49 GLVHVMRNPDESTKTEQILDLEHKLCTNGERGMQSIAPHPNF---VENNWLYIYYTAYAeecLEDEVFGpKNRLSRFTMDPQTLRIMNETEeiLMEGAPTHKfFHNGGAIKFGNDGKIYVTTGDGGGDGKG-----------------TSQDMTNLHGSILRLNDDGTVPDDNPF 203
                  555677766677888889999998888899************...56777777777433355555655559************9999887655678****9845********************9987554.................345777899*****************4 PP

  == domain 2    score: 12.7 bits;  conditional E-value: 4.4e-06
    TIGR03606 208 GsipednpeieGvkshiftyGhrnpqGlaftpdgt....lyaseqGpdsddelnii...akGGnyGwpnvaG 272
                  G +p d    + v s if+yG rnp  +++ p+ t    ++  + G +  +e+        G nyGwp   G
  MMETSP1061-20121228|29567_1 219 GVLPPDAA-NDAVCSEIFSYGFRNPFRIVMDPHETektrFFVNDVGGSVWEEISEAgtdFAGKNYGWPTYEG 289
                  66666654.4889*****************986532223899999***999997652225799*****8665 PP

>> TIGR00864  PCC: polycystin cation channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.8e-08   3.7e-05    1061    1128 ..     443     511 ..     430     534 .. 0.76

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.8e-08
    TIGR00864 1061 vqvedslllaGktvdfeahpl..pspyGvlyewdfGdGsallqqrrvahtyekrGtynvrlevnntvssa 1128
                   ++v+ + +  G  + f+      p   G+ly+wdfGd s   q+ +  h+y+k+G y vrl v ++   +
  MMETSP1061-20121228|29567_1  443 IEVDATNVNVGEIIAFDGRSSfdPEDLGLLYKWDFGDDS-FSQEANPIHAYAKSGQYTVRLGVTDSANHT 511 
                   566666666677777765554126678**********98.56778899*************998766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (844 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.33
# Mc/sec: 3375.72
//
Query:       MMETSP1061-20121228|29585_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-08   31.7   0.1    1.6e-06   25.3   0.1    3.0  4  TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein


Domain annotation for each model (and alignments):
>> TIGR03866  PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0      0.18   7.4e+02     174     197 ..      44      67 ..      31      71 .. 0.73
   2 ?    0.2   0.0     0.017        68      51      80 ..     102     131 ..      85     145 .. 0.74
   3 !   25.3   0.1   3.8e-10   1.6e-06      52     205 ..     145     310 ..     106     321 .. 0.75
   4 !    4.7   0.0   0.00072         3     233     285 ..     288     341 ..     275     342 .. 0.67

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.18
    TIGR03866 174 ftadgkelwvsseigGtvsvidva 197
                   t+ ++ l +s+   G+v + d +
  MMETSP1061-20121228|29585_1  44 LTKHSAALCASASADGSVKIWDLS 67 
                  566777788888888888887765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.017
    TIGR03866  51 dgkllyvcasdsdavqvldaeteevlkelp 80 
                   +     +asd+ ++++ da+t+e l +++
  MMETSP1061-20121228|29585_1 102 GTDPFVATASDDKTLRLWDAQTTEALVDFR 131
                  4444556799***********999887764 PP

  == domain 3    score: 25.3 bits;  conditional E-value: 3.8e-10
    TIGR03866  52 gkllyvcasdsdavqvldaeteevlkelpsGedPelfvlepdgkllyianeddalvtvvdiekrkvlaeidvGveP..eGlavsPdgklvvntsettnmahf..........idtetlkivdnvlvdarPraaeftadgkelwvsseigGtvsvidvatrkvikki 205
                   + l+v+ s +++v++ d+++ + +++lp+  dP + v  + + +  ++  +d l+ v d+ + + l+ +    +P    ++ sP+gk+v++ +    +  +            t t +  +n+      r+   +   ++  v+   +G v++ dv+trkv + +
  MMETSP1061-20121228|29585_1 145 ASNLLVSGSFDETVKLWDVRSGQCVSTLPAHSDPVTAVSFNRDGTCVVSASHDGLIRVWDVGTGECLKTVFAAGNPpvSHVTYSPNGKYVLAGTLDNALRLWpmsvsgkakcAKTYTSEHHTNTKYCISSRFLVSQPKRRQCIVTGSESGHVVLYDVQTRKVHQVL 310
                  46789999******************************99999999***********************97655552446899*****999866544444332111111111455556666666666666777777777777788777888888888888877654 PP

  == domain 4    score: 4.7 bits;  conditional E-value: 0.00072
    TIGR03866 233 valGPanrvavvdaktlevedyll.vGrrvWqlaftpdekkllttnGvsndvsv 285
                  v+   + +v + d++t +v++ l  v + v     + de +ll++ G+s d +v
  MMETSP1061-20121228|29585_1 288 VTGSESGHVVLYDVQTRKVHQVLEqVHKDVVMAVDAHDEIELLASGGMSKDRTV 341
                  333456788888888888888885255555555556788888888888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1891.84
//
Query:       MMETSP1061-20121228|29613_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 491.29
//
Query:       MMETSP1061-20121228|29658_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|29677_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-08   29.5   0.0      5e-08   29.5   0.0    1.0  1  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    9.2e-06   22.5   0.0    9.4e-06   22.4   0.0    1.0  1  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
     0.0027   14.2   0.0     0.0027   14.2   0.0    1.0  1  TIGR02316 propion_prpE: propionate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   3.6e-11     5e-08     558     608 ..       3      54 ..       1      57 [] 0.85

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 3.6e-11
    TIGR02188 558 eeelekelkklvrkeigpiakpd.kilvveelPktRsGkimRRllrkiaege 608
                  +ee++k++  +v++++ p+ + d  i++v+++Pk  sGki+RR+lr+ ++++
  MMETSP1061-20121228|29677_1   3 HEEMKKNIYGWVKERVVPYKRLDgGIFFVDSIPKSASGKILRRILRDELAEQ 54 
                  4579***************997736*********************866554 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   6.9e-09   9.4e-06     464     507 ..       5      49 ..       1      50 [. 0.85

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 6.9e-09
    TIGR02262 464 aleeelkehvkdklapyky.prwievvddlpktatGkiqrfklre 507
                   +++++  +vk+++ pyk     i +vd++pk+a+Gki r  lr+
  MMETSP1061-20121228|29677_1   5 EMKKNIYGWVKERVVPYKRlDGGIFFVDSIPKSASGKILRRILRD 49 
                  466778889********962568*****************99997 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0     2e-06    0.0027     559     599 ..       7      48 ..       1      56 [. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2e-06
    TIGR02316 559 ekelmalvesqlgavar.parvyvvaalpktrsgkllrraiq 599
                  +k++   v++++  + r    +++v+++pk+ sgk+lrr ++
  MMETSP1061-20121228|29677_1   7 KKNIYGWVKERVVPYKRlDGGIFFVDSIPKSASGKILRRILR 48 
                  5666666777777776624579*****************885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 313.47
//
Query:       MMETSP1061-20121228|29709_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 284.28
//
Query:       MMETSP1061-20121228|29714_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1864.35
//
Query:       MMETSP1061-20121228|29727_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-07   26.3   0.0    1.4e-06   25.7   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
    3.5e-06   22.9   0.0    4.4e-06   22.6   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0022   14.8   0.2     0.0032   14.3   0.1    1.1  1  TIGR02906 spore_CotS: spore coat protein, CotS family


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0     1e-09   1.4e-06      54     136 ..     154     249 ..     128     256 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 1e-09
    TIGR03724  54 akkagvntPvvydv.....dpeekkivmeyiegkklkdlleekel........ellkevGelvgklHkagivhgDlttsNiivkddklyliDfGLg 136
                  ++  g ++P+v+ v     ++++ +ivm y +g +l  ++ + ++          ++++ + + +l + gi+h Dl  +Ni+v++d++++iD+G+ 
  MMETSP1061-20121228|29727_1 154 MRYIGNSSPHVLGVrdilsTDRHLHIVMPYCRGGDLFGIVAKYSDgmpepaarYWFRQILKGLLHLQSVGICHRDLSLENILVDTDNCCIIDMGMC 249
                  44455555555544111222455889**********99999988888888877778888888889999**************************95 PP

>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   3.3e-09   4.4e-06      85     241 ..     209     378 ..     161     380 .. 0.74

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 3.3e-09
    TIGR03903  85 mlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlp........gveda...deatltrttevlGsPaYaaPeqLRg.epvta.ksDlYaWGLivleCLtGkrvvqGasvaevlykq.LsPvdvs.lPsa..iaghpLgevLRkalnkdvrqRaasaeala 241
                    q+L +l +  + G+ hRDL  +ni+v +     +  ++D G+  L+p        gv d+      +l + + v G  +Y +Pe   + ep    + Dl+a G+i+   +tG +  + as  +  +   +s   v+ l ++    +   +++L ++l+ d+r+R + ae +a
  MMETSP1061-20121228|29727_1 209 FRQILKGLLHLQSVGICHRDLSLENILVDT----DNCCIIDMGMCLLVPysdpanpgGVTDVrggTIRRLMKPHGVCGKRNYMSPEIHANvEPFDGfAIDLWAAGVILYIMITGFPPYEEASRTDERFDIiVSGRLVAqLREWevPISRDAADLLQSILREDPRDRSTLAEVMA 378
                  67*************************954....56789******999755555555555551114566778899***********8766377654267***************99999999876555431344444423322113467789999**********999988765 PP

>> TIGR02906  spore_CotS: spore coat protein, CotS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   2.4e-06    0.0032     186     215 ..     220     249 ..     217     253 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 2.4e-06
    TIGR02906 186 kkrglcHqDyayhNillkdnevyviDlDsv 215
                  ++ g+cH+D++ +Nil++ ++  +iD+  +
  MMETSP1061-20121228|29727_1 220 QSVGICHRDLSLENILVDTDNCCIIDMGMC 249
                  5789**********************9887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1734.06
//
Query:       MMETSP1061-20121228|29754_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 865.26
//
Query:       MMETSP1061-20121228|29769_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 1021.18
//
Query:       MMETSP1061-20121228|29763_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-08   31.8   0.0    4.3e-08   31.2   0.0    1.2  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.0     1e-11   4.3e-08     137     216 ..     157     244 ..     133     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 1e-11
    TIGR02933 137 dreavrerieallrrlrak.......reafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLfqlaegeLs.avieselGwhlLl 216
                  ++e ++e +e+ll  l+++       r++f ela   s+C +a  gG LG+ +r  + p  ++a f+l+ ge+  ++++++ G h+Ll
  MMETSP1061-20121228|29763_1 157 TKEEAHEELEGLLEILQEEegdltelRATFMELARTESDCSSAKRGGDLGYFGRKKMQPPFEEASFRLKIGEMTkSIVDTKSGSHILL 244
                  55666666666666665542222222789*******************************************973689********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1417.45
//
Query:       MMETSP1061-20121228|29768_1  [L=177]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (177 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1112.48
//
Query:       MMETSP1061-20121228|29776_1  [L=1093]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1093 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.40
# Mc/sec: 3606.60
//
Query:       MMETSP1061-20121228|29800_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|29792_1  [L=812]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (812 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.41
# Mc/sec: 2614.03
//
Query:       MMETSP1061-20121228|29808_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1236.79
//
Query:       MMETSP1061-20121228|29812_1  [L=532]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (532 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 2065.24
//
Query:       MMETSP1061-20121228|29825_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-11   39.3   0.0    4.6e-11   39.2   0.0    1.0  1  TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component


Domain annotation for each model (and alignments):
>> TIGR00239  2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   1.1e-14   4.6e-11       3      68 ..      11      78 ..       9      88 .. 0.85

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 1.1e-14
    TIGR00239  3 sganasyieelyeaylkdPssvdaswketfdelsktk..vateqfqapsrsdfkrlakeaekgavtvs 68
                  g n+sy+eelye+yl dP+ v ++w+e fd l+k +   +++ +++  r++f  l+k++++ a  +s
  MMETSP1061-20121228|29825_1 11 YGGNLSYVEELYETYLMDPNGVPQEWREEFDRLPKVGdnLTQDVPHSAIREHFLYLSKNQKRAAPAAS 78
                 468********************************9854567889************99988775554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 355.97
//
Query:       MMETSP1061-20121228|29827_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1061-20121228|29837_1  [L=523]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-241  800.6   8.8   1.5e-241  800.4   6.1    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
   1.9e-125  417.4   8.0   2.2e-125  417.2   5.5    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
   4.2e-110  366.8   8.2     5e-110  366.5   5.7    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
   9.6e-109  361.8   6.3   1.2e-108  361.5   4.4    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
   1.1e-101  338.9   8.8   1.4e-101  338.6   6.1    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    2.1e-98  328.0   8.4    2.5e-98  327.7   5.8    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    4.2e-87  290.6   6.4    5.2e-87  290.3   4.5    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    1.9e-79  265.3   4.7    2.5e-79  265.0   3.2    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    1.7e-71  239.2   4.4    2.2e-71  238.8   3.1    1.1  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
    9.6e-21   71.6   4.6    5.1e-13   46.2   0.5    2.2  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  800.4   6.1  3.6e-244  1.5e-241       5     519 .]       8     519 ..       4     519 .. 0.98

  Alignments for each domain:
  == domain 1    score: 800.4 bits;  conditional E-value: 3.6e-244
    TIGR02341   5 dsaeeeraenarlssfvgaiavgdlvkstlgpkgmdkillsassea.sivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnk.kihpqtiiegyrlatkaalealkksavdnssdkvkfredllkiarttlsskilsqdkdhfaklavdavlrlkgstnleaiqiikklggklddsyldegfllekkigvnqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhninvfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeeaqkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniikaaprar 519
                  +++e e++ narlss++ga+a+ dlvk+tlgpkgmdkil+s +++  si vtndgatil +i+ldn+aakvlvd++kvqd+evgdgttsv+v++ ellreae+++ + +ihpqti +g+rlatk+a+e+l++++ d+  d     +d+lkia ttlssk++  +k++fa+l v+av rl gs+nl++iqiik  gg+l  syl+egfllek igv qpkr+e+ +il+ant++dtdk+k++gsrv+vds  k+a++e+aek kmk kv+ki +h++nvfinrqliynype lfa+ g+maiehadf+g+erla vtgge+ stfd+p++v+lg c+++eei+ige k+l++ g+k g activlrg+++ i+deaers+hdal++ls t k  + ++gggc+e+ ma+a+++++++++gkka+a+ +fakal qlp  +adn g+d+aelv++lraaha g+++ gld+++g+i+d+++lg++esy+ k +vv+sa+eaae+llrvd+iik apr+r
  MMETSP1061-20121228|29837_1   8 QGVEVEKGSNARLSSLIGAMAISDLVKTTLGPKGMDKILQSIDPNDqSISVTNDGATILSKIPLDNAAAKVLVDVAKVQDQEVGDGTTSVAVFCGELLREAEQMLLQaRIHPQTICAGWRLATKVARETLESCSTDSITD-----DDMLKIAMTTLSSKLVNSEKEYFANLCVKAVKRLEGSGNLDHIQIIKLPGGSLRSSYLEEGFLLEKSIGVGQPKRLEKCNILLANTSMDTDKIKIYGSRVQVDSLNKVAQIEQAEKLKMKRKVDKIIAHGCNVFINRQLIYNYPESLFAAKGIMAIEHADFDGIERLAAVTGGEVCSTFDNPDKVQLGYCEVMEEIMIGETKVLRLGGCKSGAACTIVLRGSSNHIIDEAERSIHDALCILSATLKYPKRIYGGGCTEVAMAQAIDTASKETPGKKAIAMASFAKALLQLPMTVADNGGYDAAELVTQLRAAHASGKTSYGLDMDNGTIGDMEQLGVMESYRSKLQVVTSASEAAEMLLRVDDIIKCAPRRR 519
                  66788************************************9875449******************************************************987665****************************9999.....9*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************86 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  417.2   5.5  5.5e-128  2.2e-125       5     520 ..       6     514 ..       3     515 .. 0.95

  Alignments for each domain:
  == domain 1    score: 417.2 bits;  conditional E-value: 5.5e-128
    TIGR02339   5 lkegtqrtkgrdalksniaaakavaeavkstlGPrGlDkmL..vdslG.dvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaed.LleqdihPtviveGyrkaaekalevideiaekidvedkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteid.aklkitspdqlkkfldqeeallkemvdkiadaGanvvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlreyaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdviaa 520
                  +++g + +kg++a+ s +  a a+++ vk+tlGP+G+Dk+L  +d+    + +tnDGatil ++ +++ aak+lv+vak qd+evgDGtt+++v+ GeLl++ae+ Ll+  ihP  i  G+r+a++ a+e++++ +++  ++d   + k+a+t+l+sk v +++k++ a+l+v+avk++  +        +ld+i+i k  Ggs++ + l eG +++k  +  g Pkr+e+ +i+l +++++++k +i   +++++s +++ +  ++e+ ++k +vdki++ G nv+i ++ i +  + ++a kGi+a+ ++  + ie+la +tG+++ s++++ ++ +LG+ e++ee  +ge k++ + g+k   a ti+lrG+++h++de+eR+++Dal ++ ++l+ +k + GgG +ev++a+ +   +++  G++ +a+  fa+al ++p+++a+n+G+d+ +++++lRa+h++ g++++g+d+ +g i dm +lgv+e+ + k q+++sa+eaa ++lr+Dd+i++
  MMETSP1061-20121228|29837_1   6 MSQGVEVEKGSNARLSSLIGAMAISDLVKTTLGPKGMDKILqsIDPNDqSISVTNDGATILSKIPLDNAAAKVLVDVAKVQDQEVGDGTTSVAVFCGELLREAEQmLLQARIHPQTICAGWRLATKVARETLESCSTDSITDD--DMLKIAMTTLSSKLV-NSEKEYFANLCVKAVKRLEGS-------GNLDHIQIIKLPGGSLRSSYLEEGFLLEKS-IGVGQPKRLEKCNILLANTSMDTDKIKIYgSRVQVDSLNKVAQIEQAEKLKMKRKVDKIIAHGCNVFINRQLIYNYPESLFAAKGIMAIEHADFDGIERLAAVTGGEVCSTFDNPDKVQLGYCEVMEEIMIGETKVLRLGGCKSGAACTIVLRGSSNHIIDEAERSIHDALCILSATLKYPKRIYGGGCTEVAMAQAIDTASKETPGKKAIAMASFAKALLQLPMTVADNGGYDAAELVTQLRAAHAS-GKTSYGLDMDNGTIGDMEQLGVMESYRSKLQVVTSASEAAEMLLRVDDIIKC 514
                  67788999********************************977787642699***************************************************98467889***********************998866654..4679***********.8**************665333.......3799************************96.889**********************9985379***********999999******************************************************************************************************************************************************************************************************6.9************************************************975 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  366.5   5.7  1.2e-112    5e-110       6     534 ..      11     519 ..       6     521 .. 0.94

  Alignments for each domain:
  == domain 1    score: 366.5 bits;  conditional E-value: 1.2e-112
    TIGR02340   6 erksGedvrkqnvlavvavanivktslGPvGldkml..vddv.GdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkrade.lvkrkvhPtsvisGyrlalkeavkyikeklavsveelgkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklkl.gvqivvedpeklekirkreadivkerikkilkaGanvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiyleelattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkpeee 534
                  e ++G+++r   +  ++a++++vkt+lGP G+dk+l  +d     +++tndGatil+k+ +++ aakvlv++a+ qd+evGdGttsv ++  ell++a++ l++ ++hP ++  G+rla+k a + ++   + s+++++ + ++ +a t+lssk++++e ++f+nl v av++++ +         +++++i+k +G+s r s+l +G+ l+ +++    pkr++k  i+l + ++   k+k+ g ++ v+  +k+ +i + e   +k++++ki++ G nv +  + i +     +  +g+ma+   + + + r+a +tG+++ s++ + +        +lG +e ++e  i++ +++ + g k+ ++++i+lrG+ ++++de ers+hdalc+++ tl   k + GgG+ e+a++  +++ ++    ++ +a+a fa+all +P ++a n + d++elv++lra ha+ ++        ++Gld+ ng+i d  ++Gv+e   sk++++ +a eaa  +lr+dd+ik  p ++
  MMETSP1061-20121228|29837_1  11 EVEKGSNARLSSLIGAMAISDLVKTTLGPKGMDKILqsIDPNdQSISVTNDGATILSKIPLDNAAAKVLVDVAKVQDQEVGDGTTSVAVFCGELLREAEQmLLQARIHPQTICAGWRLATKVARETLE---SCSTDSITDDDMLKIAMTTLSSKLVNSEKEYFANLCVKAVKRLEGSG-------NLDHIQIIKLPGGSLRSSYLEEGFLLEKSIGVG-QPKRLEKCNILLANTSMDTDKIKIyGSRVQVDSLNKVAQIEQAEKLKMKRKVDKIIAHGCNVFINRQLIYNYPESLFAAKGIMAIEHADFDGIERLAAVTGGEVCSTFDNPD------KVQLGYCEVMEEIMIGETKVLRLGGCKSGAACTIVLRGSSNHIIDEAERSIHDALCILSATLKYPKRIYGGGCTEVAMAQAIDTASKETPGKKAIAMASFAKALLQLPMTVADNGGYDAAELVTQLRAAHASGKT--------SYGLDMDNGTIGDMEQLGVMESYRSKLQVVTSASEAAEMLLRVDDIIKCAPRRR 519
                  6789999***************************9855665415699***************************************************98367889**************99977665...5899*********************************9999887766.......4789************************99876.599******************9976899*******************************************************************************98874......678*******************************************************************************************************************************97654........57**********************************************998765 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  361.5   4.4  2.9e-111  1.2e-108       8     519 ..       7     513 ..       3     517 .. 0.95

  Alignments for each domain:
  == domain 1    score: 361.5 bits;  conditional E-value: 2.9e-111
    TIGR02345   8 kegtdtsqGkgqlisninacvaiaeilkttlGPrGmdklivs...kek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakp.lieeglhpqliiralrealklaieklkeiaveldeeksekrevleklaatalsskliaeekeffskmvvdavlsldkddldkkliGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaek.dnaeirvedvedykeivdaewkiileklekivesGanvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllrekskkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetik 519
                   +g++  +G +  +s +  ++ai++++kttlGP+Gmdk+++s   +++   v+ndGatil ++ +   aak+lvd+ak qd+evGdGttsv v++gell+ea + l++  +hpq i+ ++r a+k+a e l+  + +   +++     + k+a+t+lsskl+++eke+f++++v+av++l+    + + i + k+ GG+l+ s l +G  ++k+        qPk+++  +ill n  ++    k  ++ ++v++ ++  +i +ae   + +k++ki++ G nv + ++ i ++    fa + i++    + + ++r+++ tG+ + s+ ++ ++ +lG c+++ee  iG+++   + g++++ act++lrG+++++++eaers+hda++i+  +lk  k + GGG++e+ +++ + + sk++ gk+ + + ++akal  +P ++a+n G+d+ e++ +lr++ha  g++ +G+d+++ +i+d+ +  v e    k  ++++a+eaa ++l vd+ ik
  MMETSP1061-20121228|29837_1   7 SQGVEVEKGSNARLSSLIGAMAISDLVKTTLGPKGMDKILQSidpNDQsISVTNDGATILSKIPLDNAAAKVLVDVAKVQDQEVGDGTTSVAVFCGELLREAEQmLLQARIHPQTICAGWRLATKVARETLESCSTDSI-TDD----DMLKIAMTTLSSKLVNSEKEYFANLCVKAVKRLE-GSGNLDHIQIIKLPGGSLRSSYLEEGFLLEKSIGV----GQPKRLEKCNILLANTSMDTDKIKiYGSRVQVDSLNKVAQIEQAEKLKMKRKVDKIIAHGCNVFINRQLIYNYPESLFAAKGIMAIEHADFDGIERLAAVTGGEVCSTFDNPDKVQLGYCEVMEEIMIGETKVLRLGGCKSGAACTIVLRGSSNHIIDEAERSIHDALCILSATLKYPKRIYGGGCTEVAMAQAIDTASKETPGKKAIAMASFAKALLQLPMTVADNGGYDAAELVTQLRAAHAS-GKTSYGLDMDNGTIGDMEQLGVMESYRSKLQVVTSASEAAEMLLRVDDIIK 513
                  57888899999999999999******************99863223344789***********************************************99977257899**********************9988755.233....3679*****************************9.7788889************************9865....49****************9865542799*************************************************************************************************************************************************************************************************************************.99**********************************************997 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  338.6   6.1  3.3e-104  1.4e-101      24     530 ..      14     513 ..       7     515 .. 0.95

  Alignments for each domain:
  == domain 1    score: 338.6 bits;  conditional E-value: 3.3e-104
    TIGR02343  24 kGleakksniaaakavasilrtslGpkGldkilis...kdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaek.lldkGihpikiaeGfekaakvavekleeiaeeisvdednketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktk.hkldissveeykklekyekekfeemiddikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveeeadklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                  kG +a  s ++ a a++ +++t+lGpkG+dkil+s   +d+ i+vtndGatil+k+ ld+  ak+lv+++k qd+e+GdGtt+v v+ + ll +ae+ ll+  ihp  i+ G+  a+kva e le  + +      + + +lk a+t+l+sk+v+++k+ +a+++v+av  +        ++d i++ +  Ggsl ++ l +G l++k +   q +k++++++i +    ++  k k    +++++s ++  ++e+ ek k++  +d+i   G+n+ i +    +  ++l+  +++ a+       +e +a  tgG + + f++ ++ +lG +++++e+ +G t  ++l +  +k+  a ti++rG+++ ii+ea+rs+hdalc++   +k  + +yGGG++e+a++ a++ ++++++g +  a+ +fa+al ++p+++a+n G+d  e +++++a   + k +++G+d  +    dm +l v+e++ +k q ++ a++  +m+l++dd+i+
  MMETSP1061-20121228|29837_1  14 KGSNARLSSLIGAMAISDLVKTTLGPKGMDKILQSidpNDQSISVTNDGATILSKIPLDNAAAKVLVDVAKVQDQEVGDGTTSVAVFCGELLREAEQmLLQARIHPQTICAGWRLATKVARETLESCSTDSI----TDDDMLKIAMTTLSSKLVNSEKEYFANLCVKAVKRLEGS----GNLDHIQIIKLPGGSLRSSYLEEGFLLEKSIGVGQ-PKRLEKCNILLANTSMDTDKIKIYgSRVQVDSLNKVAQIEQAEKLKMKRKVDKIIAHGCNVFINRQLIYNYPESLFAAKGIMAIEHADFDGIERLAAVTGGEVCSTFDNPDKVQLGYCEVMEEIMIGET--KVLRLGGCKSGAACTIVLRGSSNHIIDEAERSIHDALCILSATLKYPKRIYGGGCTEVAMAQAIDTASKETPGKKAIAMASFAKALLQLPMTVADNGGYDAAELVTQLRAAHASGK-TSYGLDMDNGTIGDMEQLGVMESYRSKLQVVTSASEAAEMLLRVDDIIK 513
                  899******************************984445688*****************************************************98356889*********************98876543....4689****************************9876554....588899999999********************998.899*******************86268*************************************999999********************************************************976..69************************************************************************************************************998776.679***9999999**********************************97 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  327.7   5.8  6.2e-101   2.5e-98       5     515 ..      13     513 ..      10     515 .. 0.94

  Alignments for each domain:
  == domain 1    score: 327.7 bits;  conditional E-value: 6.2e-101
    TIGR02342   5 ekpedvrtsnivaakavadairtslGpkGmdkliqe...kkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaa.ekllekgihptiisesfqsaadealkilkelsipvdlsdrealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdme.nqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqksilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskkarelkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddivl 515
                  ek ++ r s+++ a a++d ++t+lGpkGmdk++q+   +   + +tndGatil+++ +   aak+lv+++k qd e GdGttsv v++G ll  a + ll+  ihp++i+ +++ a++ a + l++ s+  +++d + ++k a+t+lssk+v    + +a l+v+av+++  s      +l +i+++k  Gg +  + l eG +l++ +    g+p+r+ek  i l +  + + k ++  ++v v+  +++ ++ + e+  +   v+ki + g+nv++      r  + +    ++a k+i+ +   + + +e ++ + G +  +  d+  + +lG+ e++ee+  +++k++++ G+k+ g + ++++rGs + +ideaers+hdalc++ + +k    i GGG+ e+ +a+++   ++e  G ++  + +fa+al  +p+t+a+n G ++ ++vt+lr +ha+G++++G+++ +g+i d+ +  v+  +  +   vt ase+ +++l++ddi+ 
  MMETSP1061-20121228|29837_1  13 EKGSNARLSSLIGAMAISDLVKTTLGPKGMDKILQSidpNDQSISVTNDGATILSKIPLDNAAAKVLVDVAKVQDQEVGDGTTSVAVFCGELLREAeQMLLQARIHPQTICAGWRLATKVARETLESCSTD-SITD-DDMLKIAMTTLSSKLVNSEKEYFANLCVKAVKRLEGS-----GNLDHIQIIKLPGGSLRSSYLEEGFLLEKSIG--VGQPKRLEKCNILLANTSMDTDKIKIYgSRVQVDSLNKVAQIEQAEKLKMKRKVDKIIAHGCNVFI-----NRQLIYNYPESLFAAKGIMAIEHADFDGIERLAAVTGGEVCSTFDNPDKVQLGYCEVMEEIMIGETKVLRLGGCKS-GAACTIVLRGSSNHIIDEAERSIHDALCILSATLKYPKRIYGGGCTEVAMAQAIDTASKETPGKKAIAMASFAKALLQLPMTVADNGGYDAAELVTQLRAAHASGKTSYGLDMDNGTIGDMEQLGVMESYRSKLQVVTSASEAAEMLLRVDDIIK 513
                  788999***************************997332456799***********************************************97661568899**********************998764.4444.556799***************************9885.....899************************98877..7**********************9985267889999***************************984.....566677778889999***********************************************************86.6789*****************************************************************************************************************************************************96 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  290.3   4.5   1.3e-89   5.2e-87       5     521 ..       6     513 ..       3     518 .. 0.94

  Alignments for each domain:
  == domain 1    score: 290.3 bits;  conditional E-value: 1.3e-89
    TIGR02344   5 lnqntkresGrkaqlsniqaakavadiirttlGpkamlkml..ldplG.givltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaep.fleknihptvivraykkaledalkvleelsipvdvedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesq.tnveilkeedwnrllqleeeevkklceeiiavkpdlvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkakklegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddivs 521
                  ++q  + e+G +a+ls +  a a++d+++ttlGpk m k+l  +dp   +i +tndG +il +i ++  aak l++++++qd+evGdGttsv +++Gell +ae+ +l+  ihp  i+ +++ a + a ++le  s +     ++++lk+  +++++k+v+  ++  ++l ++avk ++ +  n          ++++ k+pGG++++s++ +G ll+k +   + +r +e   i+l +++++  k +   + v++ + +++ ++ q e+ ++k+  ++iia+ +++ i  + + +  +  ++ ++i ai        +r+a v+G ++ +  ++  + ++G  + ++e  +iG+     l  ck   acti+lrG+s  +++e er ++dal +    l  pk ++GGG+te+a+++++  ++k++ g + + + + a+al  +p t++ n G ++   +t+lra ha++ k+++G+d ++G+i dm++ g+ e++  klq++ +a e+a +llr+ddi+ 
  MMETSP1061-20121228|29837_1   6 MSQGVEVEKGSNARLSSLIGAMAISDLVKTTLGPKGMDKILqsIDPNDqSISVTNDGATILSKIPLDNAAAKVLVDVAKVQDQEVGDGTTSVAVFCGELLREAEQmLLQARIHPQTICAGWRLATKVARETLESCSTD--SITDDDMLKIAMTTLSSKLVNSEKEYFANLCVKAVKRLEGSG-NLD--------HIQIIKLPGGSLRSSYLEEGFLLEKSIGVGQPKR-LEKCNILLANTSMDTDKIKIYgSRVQVDSLNKVAQIEQAEKLKMKRKVDKIIAHGCNVFINRQLIYNYPESLFAAKGIMAIEHADFDGIERLAAVTGGEVCSTFDNPDKVQLGY-CEVMEEIMIGETKVLRLGGCKSGAACTIVLRGSSNHIIDEAERSIHDALCILSATLKYPKRIYGGGCTEVAMAQAIDTASKETPGKKAIAMASFAKALLQLPMTVADNGGYDAAELVTQLRAAHASG-KTSYGLDMDNGTIGDMEQLGVMESYRSKLQVVTSASEAAEMLLRVDDIIK 513
                  67888999*******************************9977799753899***************************************************98578999*********************988865..455667999999***********************9887666.333........578899*********************9998877.68899*********999876526799999999**************************************************************************99999995.9999999**********************************************************************************************************************99.799*********************************************96 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  265.0   3.2     6e-82   2.5e-79       9     518 ..       9     513 ..       3     519 .. 0.92

  Alignments for each domain:
  == domain 1    score: 265.0 bits;  conditional E-value: 6e-82
    TIGR02346   9 GyrhlsgleeavlknieaikelseitrtslGPngmnklv..inhlek.lfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeel.irlGlspseiikGyelalkkalevLeelvvlevkdleekeelikalkaslsskqlgn.edilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkre.aegsvkrvkdakvavfscpldtattetkGt.vLlknaeelldyskgeekkiealikeiadsgvkvivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkkyaeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiim 518
                  G +  +g +  +   i a+  +s++++t+lGP+gm+k++  i+  ++ + vtnD atil ++ +   aak+lv+++k q++e+GDgt  v v+ gelL++ae++ ++  ++p+ i  G+ la+k a e+Le  ++ +++d    ++++k+  ++lssk +++ ++++a+l  ka+  +      + n+d+i+++kl Ggsl++s++ +G++l++    g+ kr ++ ++   ++++dt +    G  v + + +++ +  ++e  k+++++++i   g +v +    + +         +i+ +       + rl+ v g      +++p   +lG++++++   ig++kv  +   ++ ++  tivLrGs + ++d+ er+i+D + ++ a +k  + + G+g+te+ +a+++   +++++g +  a+  fa+a   +P t+a+n G++a e++++L aah +g++s+g+d+++++++  d+++  + +++ +k   +  a+eaa  +L+vD ii 
  MMETSP1061-20121228|29837_1   9 GVEVEKGSNARLSSLIGAM-AISDLVKTTLGPKGMDKILqsIDPNDQsISVTNDGATILSKIPLDNAAAKVLVDVAKVQDQEVGDGTTSVAVFCGELLREAEQMlLQARIHPQTICAGWRLATKVARETLESCSTDSITD----DDMLKIAMTTLSSKLVNSeKEYFANLCVKAVKRLE----GSGNLDHIQIIKLPGGSLRSSYLEEGFLLEKSiGVGQPKRLEKCNILLANTSMDTDKIKIYGSrVQVDSLNKVAQIEQAEKLKMKRKVDKIIAHGCNVFINRQLIYNYPESLFAAKGIMAIEHADFDGIERLAAVTGGEVCSTFDNPDKVQLGYCEVMEEIMIGETKVLRLGGCKS-GAACTIVLRGSSNHIIDEAERSIHDALCILSATLKYPKRIYGGGCTEVAMAQAIDTASKETPGKKAIAMASFAKALLQLPMTVADNGGYDAAELVTQLRAAHASGKTSYGLDMDNGTIG--DMEQLGVMESYRSKLQVVTSASEAAEMLLRVDDIIK 513
                  5555555555555555554.699**************9744555555166***************************************************98626889**********************999888876....788999999******98857888888888887764....568**************************9983589************************99758999*****************************************************97766669***************************************99988877.7889***************************************************************************************************************9985..**********************************96 PP

>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  238.8   3.1   5.5e-74   2.2e-71       9     526 ..      10     515 ..       4     520 .. 0.92

  Alignments for each domain:
  == domain 1    score: 238.8 bits;  conditional E-value: 5.5e-74
    TIGR02347   9 aevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvs...gaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlie.eglhPrilteGleiakkealefleklkikkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeeeidlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsg.fvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklkeekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraG 526
                   ev + ++a   +l +a +++d++kt lGPkG  k+l s       i +t dG ++l ++ + + +a+++  +a  qd+ +GdGtts+ +++gell+ ae+++    +hP+ +  G  +a k a e le+    +++ +d ++l ++a t+l  kl ++  + +++  v+av+ ++ +++   l  ++i+++   +     l +G++l+      + +++++++ il  n s++ +k  ++ + +  +s ++  ++ +ae+  ++++v kii           +   v in++ i +    l+a++gi+a+  a    +erl  ++GGe + ++++  + +lGy+  + e++ige k   +  +k+  ++ti+++g+ +h ++  + +++d l  ++ +++    + G g+ e+a+++++ +  k+  Gk+ +++  fa+all++P ++++n+Gyd+ e +++l++++  +++  g+d++ g+  + e+ g+ ++y+ k q+++sa+  a  ll vd+++++ 
  MMETSP1061-20121228|29837_1  10 VEVEKGSNARLSSLIGAMAISDLVKTTLGPKGMDKILQSidpNDQSISVTNDGATILSKIPLDNAAAKVLVDVAKVQDQEVGDGTTSVAVFCGELLREAEQMLLqARIHPQTICAGWRLATKVARETLESC--STDSITDDDML-KIAMTTLSSKLVNSEKEYFANLCVKAVKRLEGSGN---LDHIQIIKLPGGSLRSSYLEEGFLLEKSIG-VGQPKRLEKCNILLANTSMDTDKIKIYGSrVQVDSLNKVAQIEQAEKLKMKRKVDKIIAH-------GCN---VFINRQLIYNYPESLFAAKGIMAIEHADFDGIERLAAVTGGEVCSTFDNPDKVQLGYCEVMEEIMIGETKVLRLGGCKSGAACTIVLRGSSNHIIDEAERSIHDALCILSATLKYPKRIYGGGCTEVAMAQAIDTASKETPGKKAIAMASFAKALLQLPMTVADNGGYDAAELVTQLRAAHASGKTSYGLDMDNGTIGDMEQLGVMESYRSKLQVVTSASEAAEMLLRVDDIIKCA 515
                  56777777777889999********************873333567******************************************************9876488************************..45555676665.7999******************9999888776665...999***********************9876.56799*********************96615567778888999999999******99964.......334...678888888888899**************************************************************************************************************************************************************************************************************************996 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.5   1.2e-15   5.1e-13       8     150 ..      16     160 ..      10     189 .. 0.82
   2 !   27.1   0.1   7.6e-10   3.1e-07     383     520 ..     370     512 ..     351     518 .. 0.82

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.2e-15
    TIGR02348   8 eearkalekGvdkladavkvtlGPkgrnvvlek...sfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlkn.vaaGanpielkrGiekavekvveelkklskevkdkeeiaqva..tisa 150
                  ++ar +   G  +++d vk+tlGPkg + +l+    +  + ++t+dG t+  +i l    +n  ak++ +va+  ++  GdGtt  +v++  +++e  ++ + a   p ++  G   a++ + e+l++ s++  +++++ ++a  t+s+
  MMETSP1061-20121228|29837_1  16 SNARLSSLIGAMAISDLVKTTLGPKGMDKILQSidpNDQSISVTNDGATILSKIPL----DNAAAKVLVDVAKVQDQEVGDGTTSVAVFCGELLREAEQMlLQARIHPQTICAGWRLATKVARETLESCSTDSITDDDMLKIAmtTLSS 160
                  5778888889999***************99865222567789*********99977....57899*******************************9987257999************************9999999998887223443 PP

  == domain 2    score: 27.1 bits;  conditional E-value: 7.6e-10
    TIGR02348 383 tetelkekkarvedalnatraavee.GivaGGGvallraaekleelkekse.dekvGveivkraleaPlrqiaenaGkdgavvvekvkek...kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiagllltteavv 520
                  ++  + e    + dal    a+++    + GGG + + +a++++++++++   +++ +    +al +   ++a+n+G+d+a +v +++++    ++++G +  +++  d+ + G++++ +   + ++ a+  a +ll  + ++
  MMETSP1061-20121228|29837_1 370 SNHIIDEAERSIHDALCILSATLKYpKRIYGGGCTEVAMAQAIDTASKETPgKKAIAMASFAKALLQLPMTVADNGGYDAAELVTQLRAAhasGKTSYGLDMDNGTIGDMEQLGVMESYRSKLQVVTSASEAAEMLLRVDDII 512
                  555566777778999999888887624699**************97666654999****9****9988889************999987622245789**********************99999999999999**9988777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (523 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.45
# Mc/sec: 1534.01
//
Query:       MMETSP1061-20121228|29900_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-07   27.6   0.6     0.0023   15.5   0.1    2.8  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   5.1e-05      0.21       3      25 ..      40      62 ..      38      88 .. 0.86
   2 !   15.5   0.1   5.7e-07    0.0023      38     126 ..     226     320 ..     221     337 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 5.1e-05
    TIGR00231  3 eikivivGhvdvGKstLlnsllk 25
                 +ik++++G +++GKst++++++ 
  MMETSP1061-20121228|29900_1 40 KIKLLLLGAGESGKSTIFKQMRI 62
                 589***************99865 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 5.7e-07
    TIGR00231  38 trdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqt........keiiheakkkgvpiilvvnKiDlkd 126
                  t ++++e  ++dG  +++++ D++Gq   ++ +   +  v+++++v+ ++ +   + e +   +        +++ + +  +++ ++l++nK D+ +
  MMETSP1061-20121228|29900_1 226 TTQVNMERYRIDG--IEFEMYDVGGQRSERRKWIDCFDSVDAVIFVAALSEFDQNLAESKRTNRmvealelfRTVCNNRAFANTSVLLFLNKKDIFE 320
                  455677779****..88********999999999999999999999887655333333221111111111114555666668999999999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 1979.84
//
Query:       MMETSP1061-20121228|29917_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 615.95
//
Query:       MMETSP1061-20121228|29932_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 894.59
//
Query:       MMETSP1061-20121228|29941_1  [L=562]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-05   21.2   0.0    5.4e-05   20.5   0.0    1.3  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    4.6e-05   20.3   0.0    6.7e-05   19.8   0.0    1.2  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    0.00023   17.9   0.0    0.00036   17.3   0.0    1.2  1  TIGR00877 purD: phosphoribosylamine--glycine ligase


Domain annotation for each model (and alignments):
>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     4e-08   5.4e-05      71     172 ..     229     338 ..     185     343 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 4e-08
    TIGR00768  71 lGveviNssqaienagdKllssalLakaglplpktl..vagseeeakklieeig..fPvvlKpvfGswGklvvlvedkqea.ekllealeqlke...kykvflvQeyikk 172
                  lG+ v+N      + +dK l  +++a+agl + k +  + g+  ++  ++e ++  +Pvv+K+ +G   + v+ +++++ a ++  ++++ +++   k +  l+ eyi+ 
  MMETSP1061-20121228|29941_1 229 LGLVVVNDLGLSSARRDKGLMKVAVANAGLRVAKYArlTQGNGRDVVSAVEGLEleYPVVVKTPRGMGTQDVFICKNEEDAvAAATKIVRNVGPdgrKTQYALLEEYITG 338
                  5888999999889999*************999886511556888999999988888*******************98765515566777777654456778889999975 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.9e-08   6.7e-05      99     202 ..     238     347 ..     229     419 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 4.9e-08
    TIGR01205  99 laSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeaf.......eydeevlveeaikgrelevsvle 202
                    S +  dK l+K  ++++gl va+ya l++ +  +   +  +  +l++pv+vK+ r      v+++k+ee+  +a+++ +       + ++  l+ee+i g+e++v ++ 
  MMETSP1061-20121228|29941_1 238 GLSSARRDKGLMKVAVANAGLRVAKYARLTQGNGRDVV-SAVEGLELEYPVVVKTPRGMGTQDVFICKNEEDAVAAATKIVrnvgpdgRKTQYALLEEYITGEEFAVNLVA 347
                  5677889**********************776666444.4446678********999888889999999998777766544111111145667899999999999888766 PP

>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.3   0.0   2.6e-07   0.00036     104     201 ..     245     346 ..     242     359 .. 0.81

  Alignments for each domain:
  == domain 1    score: 17.3 bits;  conditional E-value: 2.6e-07
    TIGR00877 104 sKafakdllkkagiptaeyevftep..eeakeyieekgap.aivvkadgLaaGKgvivvkdeeealkaveeilekkkf.geagekvviEefleGeEvsllal 201
                  +K  +k  +++ag++ a+y+ +t+    ++ + +e  + +  +vvk  +  +   v ++k+ee+a++a+++i+++    g  ++  ++Ee++ GeE+++  +
  MMETSP1061-20121228|29941_1 245 DKGLMKVAVANAGLRVAKYARLTQGngRDVVSAVEGLELEyPVVVKTPRGMGTQDVFICKNEEDAVAAATKIVRNVGPdGRKTQYALLEEYITGEEFAVNLV 346
                  57778888899999999999988763367788888665444699999888899********************9964435566779***********99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (562 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 2853.00
//
Query:       MMETSP1061-20121228|29957_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1019.92
//
Query:       MMETSP1061-20121228|29990_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|30015_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 609.66
//
Query:       MMETSP1061-20121228|30006_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|30024_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-11   41.6   0.8    1.8e-11   41.4   0.5    1.0  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.5   4.4e-15   1.8e-11       1      69 [.      28      98 ..      28     102 .. 0.96

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 4.4e-15
    TIGR00797  1 PailaniaqpllslvDtafvGhlg..pveLaavglgslvlmvliiillglltattalvaqavGagnqqrls 69
                 Pa+l+++++plls+vDtafvG+ +  +++Laa+g+ ++++ ++++++ + ++attalv+ a+ a +q+++ 
  MMETSP1061-20121228|30024_1 28 PALLGLLVDPLLSIVDTAFVGRGSnpAIDLAALGVCTSIFHMAFTLFRASTVATTALVGGADSADEQKQIT 98
                 9**********************9999*************************************9999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 692.94
//
Query:       MMETSP1061-20121228|30039_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       297  (0.0724037); expected 82.0 (0.02)
Passed bias filter:                      250  (0.0609459); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|30098_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 433.68
//
Query:       MMETSP1061-20121228|30097_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.23
# Mc/sec: 2232.34
//
Query:       MMETSP1061-20121228|30105_1  [L=1062]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1062 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       258  (0.0628961); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.16s 00:00:00.65 Elapsed: 00:00:00.46
# Mc/sec: 3047.23
//
Query:       MMETSP1061-20121228|30132_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 437.65
//
Query:       MMETSP1061-20121228|30125_1  [L=764]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-62  208.2   6.5    5.4e-62  207.8   4.5    1.1  1  TIGR00815 sulP: sulfate permease


Domain annotation for each model (and alignments):
>> TIGR00815  sulP: sulfate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.8   4.5   1.3e-65   5.4e-62       4     563 ..     126     714 ..     123     716 .. 0.88

  Alignments for each domain:
  == domain 1    score: 207.8 bits;  conditional E-value: 1.3e-65
    TIGR00815   4 rwlekYnlkklkgDliAGltvgillvPqamayaklaglsPeyGLYtsfvaaliyalfgtSrdiaiGpvavlslllgkvvaevlkkakedvdaikiattltllaGivqvllGllrlGflveflskavisGFmtGaaitIllsQikkllGlsi..vntredtlkvvistwkslpntklanlldlviglvlllfllatkklakrlkkllfliavaelvvvivatlavsvgksskkrgvsilghipsg...pevvpekildgellsalapdaiaialvgllesiaiaksfarmkg..ykvdanqElvaiGiaNiigsffscypatgslsrsavkakagcktalsavvtaivvllvllvlapllllipkavlaaiiivavrglvdlkelyklwkvsklDvvvllvtvflvvftsieiGllvgvalSlallllriakpkaklLgrveeaevlesikeypkal..............................................................tppgvlvyrvdgplyfanaerlkdrllkriedeesareakrdrlkvvildfsavaqlDtsgihal.kelrkelearg.ielllanvakevreklkrseleekigeellfvsvs 563
                  +w++ ++ ++l  D+ AG+tvg+++vP+ +a+a+ +g+++e+GL t+ v ++   ++g+    + Gp a++sll++ +v++++ +a+           +tl +G++q + G  +lG + ++ + +vi+GF+tG++  Il+ Q++k lG++     ++ ++l+ + + ++s +n     ++ l++g + ++fll+          ++   ++  lv+v  at+a++ +       v+++g+ipsg   +++  ++ +  + l++la++ + i     +es++   ++ +mk+  yk +++qEl+++G+ Ni  ++f ++p+t  ++rs ++ + +++t+l a++ +++v  ++++++  + ++p+ +l+ ++i    g+ + +el++   v+k+D++ + +t+++ v + +  G+ +g a ++ + + ++   +a+     ++a+    +k++   +                                                               p    + +++gp +f ++ ++  +++k+ie         ++ +  ++ld++ v+ +  +g++ l   l ++ ++ g + ++++n+ +e+ + l++    + +g+ ++f++++
  MMETSP1061-20121228|30125_1 126 EWKRMFDKETLFTDISAGITVGCIAVPLNLAIALASGVPAEVGLVTAAVSGVAAGFMGGTTLAVTGPAAAISLLVVGAVEQHGIEALP---------LITLGCGALQFASGATKLGVVAKLCPVSVIAGFTTGVGTLILTNQLPKALGMTApsGLNPIELLGFIGEHFASHANP---TSAALAVGTSAAMFLLP----------KIHSKMPSALVAVGGATVATHAF----GLDVALIGTIPSGleaFQFGLPVLPAMDALPSLAATTFLIYSMTSVESLLSCAALEKMKKtpYKYNPDQELIGQGLGNIGSALFMGMPVTSVIARSSLNVRLNANTRLPALIQSGFVFSSVVFMSSTISMVPMPALSGVLITTGMGMLNPSELKHCTAVQKSDFIPFGATIAGMVTMGLAEGIGIGCATAIGMNAYQTYANNAASA--SKDAQSDSKMKAF---EliqlpagteeqkpsdamiwesrcgsqlpvnldargmhtmtaasgektfadsddakmiasavqDPTKNTIWQLNGPVNFLSMFEID-NMIKKIE-------GREETVDSIVLDMQGVTLVEFTGAEELvARLIEASDEHGsCPIQMINLTPEIEKALNQC---DPKGRIAVFPTAN 714
                  79**************************************************************************************.........9***************************************************9954445666667777666666666...8999999*******999..........2444567889999999***9999....899***********9999**************************************9976559***************************************************************************************************************************99999999999977333333..2222222223333...234477788888888889999999999*****999999999*******************9997888899*********9998876.8888888.......34445899******************943445555554437788888888888877654...4677777777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (764 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.38u 0.16s 00:00:00.54 Elapsed: 00:00:00.26
# Mc/sec: 3878.45
//
Query:       MMETSP1061-20121228|30155_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|30167_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-06   26.3   0.1    2.9e-06   25.2   0.0    1.5  2  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.0       0.3   1.2e+03      83     112 ..     163     188 ..     159     227 .. 0.59
   2 !   25.2   0.0   7.1e-10   2.9e-06      26     191 ..     370     540 ..     354     575 .. 0.55

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 0.3
    TIGR03354  83 pvrLeqgdelrlGdyeirvslaagaapafd 112
                  p+ L+ gd lr+G++ + v      +   +
  MMETSP1061-20121228|30167_1 163 PHTLQVGDFLRVGSVGVVVIE----THNGQ 188
                  788999999999998765522....22222 PP

  == domain 2    score: 25.2 bits;  conditional E-value: 7.1e-10
    TIGR03354  26 gtiGrsedcdWvlpDperlvssrhaeiekrdgaylltdl.StnGvflnnsgsplrrgepvrLeqgdelrlGdyeirvsl................aagaapafdelaptpetlvtaalqqvsseaseedlddslteagegaaprpapqaasldPlkaldqepasaadlddga.lsaelaeevae 191
                  + +Grs  +d vl+ +   vs rha+i++++g++++td+ S+nG++l      lrr  +   +q  ++rlG+  i  ++                ++g+++  d +  +      +++   +   +  d ++++ +++ ++ +r+   + s +P+ +l q++    dl   +  ++ +++e+++
  MMETSP1061-20121228|30167_1 370 LLLGRSSGSDMVLDYRT--VSARHASIRFKNGEFVFTDAgSSNGSYLY-----LRRPLELSPSQSVQFRLGRSMISMKVvnkwnrrllravrrtgQSGSKENEDDVCLD-----DRSIGSNDGAIRITDGVTGVVTKSISRRTRESVMN-SMPPPGQLSQQSGKHLDLLFALaYPQRADKEPSN 540
                  779**********9888..*******************8789999999.....66655556677888899999999998655555555555444422222222222211.....11122222222222222222223333333333222.4444444444444444444433444444444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 2133.82
//
Query:       MMETSP1061-20121228|30191_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   16.4   0.5      0.002   16.1   0.3    1.2  1  TIGR02758 TraA_TIGR: type IV conjugative transfer system pilin TraA


Domain annotation for each model (and alignments):
>> TIGR02758  TraA_TIGR: type IV conjugative transfer system pilin TraA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3     5e-07     0.002      48      96 ..      32      82 ..       2      84 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 5e-07
    TIGR02758 48 agkdSsvvkavilaellv..aavmyllTkNlkallGfaivsvfvtvgmalv 96
                    + + ++ +i+ ++lv  +  + + T+Nl  +lG a   +f+   +alv
  MMETSP1061-20121228|30191_1 32 HKTNAFKITQMIVMGALVsaGCTLAFKTRNLGSALGEAKQLLFAMYNVALV 82
                 44455556666666666511668899*****************98888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 646.75
//
Query:       MMETSP1061-20121228|30200_1  [L=452]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-05   22.5   0.0    0.00036   18.0   0.0    2.5  3  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
    4.4e-05   21.5   0.2    0.00077   17.5   0.1    2.5  2  TIGR01068 thioredoxin: thioredoxin
     0.0015   16.6   0.0     0.0035   15.5   0.0    1.6  1  TIGR01295 PedC_BrcD: putative bacteriocin transport accessory protein
     0.0031   15.0   0.0     0.0059   14.1   0.0    1.5  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
  ------ inclusion threshold ------
      0.012   13.8   0.1      0.042   12.0   0.1    1.9  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain


Domain annotation for each model (and alignments):
>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       1.7   1.4e+03      23      44 ..      33      53 ..      22      56 .. 0.72
   2 ?    1.6   0.0     0.049        41      16      48 ..     126     158 ..     120     169 .. 0.87
   3 !   18.0   0.0   4.4e-07   0.00036      52     148 ..     215     317 ..     190     344 .. 0.75

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 1.7
    TIGR00385 23 aegedikelesaligkpvpaek 44
                 a  e+ +el s l + ++ +++
  MMETSP1061-20121228|30200_1 33 A-DEQFRELSSTLTHEQAKKKN 53
                 3.56788999999999888776 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.049
    TIGR00385  16 llllkrnaegedikelesaligkpvpaekeael 48 
                   l++++n+ ge  k ++++l+g +v ++++++ 
  MMETSP1061-20121228|30200_1 126 ELQMRENKGGETWKTIAASLSGTDVRKKNLTSH 158
                  689999********************9998765 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 4.4e-07
    TIGR00385  52 vqlltaevlkkgklvLlnvwasWCptCraehplLkelake.g...lrivgvdykDesqkalkfLkelGnPyqlvl..aDekGklaldlGvygaPetflvdg.nG 148
                  vq+  a++l   + vL  v a WCp+Cr+  p+L +  k+ g    +iv +   D+++++++   +   P+ ++   +D + ++   l v g+P   ++++  G
  MMETSP1061-20121228|30200_1 215 VQVPLADALGGKEFVLFYVSAHWCPPCRKFTPMLANWYKTvGkqfAEIVFLS-ADHDENGFRSYFKSSHPWMAIDyeDDTREQIMATLRVSGIPRLVVINAlTG 317
                  455556777778999*******************875554222215666654.699999999999999***998522677778888999****99888876344 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   9.4e-07   0.00077      16      55 ..     228     268 ..     219     285 .. 0.71
   2 ?    0.7   0.0      0.16   1.3e+02      55      76 ..     292     313 ..     279     326 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 9.4e-07
    TIGR01068  16 lvlvDfwAeWCgpCkmlaPvleelakeleek.vkvvKlnvd 55 
                   vl    A+WC pC+ ++P+l++  k + ++ +++v l  d
  MMETSP1061-20121228|30200_1 228 FVLFYVSAHWCPPCRKFTPMLANWYKTVGKQfAEIVFLSAD 268
                  55655669**************9888776542334444444 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.16
    TIGR01068  55 deeqeiaakygirsiPtlllfk 76 
                  d++++i a+  ++ iP l++++
  MMETSP1061-20121228|30200_1 292 DTREQIMATLRVSGIPRLVVIN 313
                  678899999*********9986 PP

>> TIGR01295  PedC_BrcD: putative bacteriocin transport accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   4.2e-06    0.0035      17      50 ..     220     253 ..     210     284 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 4.2e-06
    TIGR01295  17 lekldkdetfilfiGfkeCpyCRkfsrtlssyla 50 
                   ++l  +e +++++  + Cp CRkf+++l ++ +
  MMETSP1061-20121228|30200_1 220 ADALGGKEFVLFYVSAHWCPPCRKFTPMLANWYK 253
                  567788999********************87643 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   7.1e-06    0.0059      52      81 ..     226     257 ..     191     296 .. 0.83

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 7.1e-06
    TIGR02738  52 yklvlfyqst..CpyChqfapvLkqlsqqtgl 81 
                   ++vlfy s   Cp C++f p+L ++ + +g 
  MMETSP1061-20121228|30200_1 226 KEFVLFYVSAhwCPPCRKFTPMLANWYKTVGK 257
                  579999999667*************9988764 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.1   5.2e-05     0.042      14      76 ..     226     286 ..     216     302 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 5.2e-05
    TIGR01126  14 nkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlk 76 
                  ++ vl    a WC  C+k++P   +  k++ k+    +i  + a+++++  +++  s++P + 
  MMETSP1061-20121228|30200_1 226 KEFVLFYVSAHWCPPCRKFTPMLANWYKTVGKQFA--EIVFLSADHDENGFRSYFKSSHPWMA 286
                  5667777779***********98888888887765..45555666666555666666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (452 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 2386.36
//
Query:       MMETSP1061-20121228|30231_1  [L=739]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (739 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 3146.45
//
Query:       MMETSP1061-20121228|30239_1  [L=782]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.20s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 2580.39
//
Query:       MMETSP1061-20121228|30254_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.16s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|30264_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 251.98
//
Query:       MMETSP1061-20121228|30271_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 1314.39
//
Query:       MMETSP1061-20121228|30274_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   16.0   0.6        1.4    6.5   0.0    3.0  4  TIGR00336 pyrE: orotate phosphoribosyltransferase
     0.0033   14.8   0.3          2    5.6   0.0    3.0  3  TIGR04109 heme_ox_HugZ: heme oxygenase, HugZ family


Domain annotation for each model (and alignments):
>> TIGR00336  pyrE: orotate phosphoribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.0   0.1     0.001         2     100     127 ..      69      96 ..      29     117 .. 0.58
   2 !    6.5   0.0   0.00068       1.4     101     166 ..      70     135 ..      64     141 .. 0.80
   3 ?    0.4   0.0     0.052   1.1e+02     111     142 ..     130     161 ..     112     164 .. 0.82
   4 !    5.4   0.0    0.0015       3.1     104     142 ..     174     211 ..     160     232 .. 0.83

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.001
    TIGR00336 100 kivGelkegkkvvvveDvittGtsilea 127
                  +  Gel+++++ +v+  v+  G +++ a
  MMETSP1061-20121228|30274_1  69 HATGELQQNDRNIVLAAVMQNGLALQYA 96 
                  2345555555555555555555555544 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00068
    TIGR00336 101 ivGelkegkkvvvveDvittGtsileaveaiqeagaevagvivvldrqevsaeeevekeyelklls 166
                    Gel+++++ +v+  v+  G +++ a    ++ + +v +++    r    a + ++ ++e+ l++
  MMETSP1061-20121228|30274_1  70 ATGELQQNDRNIVLAAVMQNGLALQYAGVVFRNDREIVFTAVTKDYRALEYASDPLKGDFEILLTA 135
                  57*************************999999999888887766566556666666666666555 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.052
    TIGR00336 111 vvvveDvittGtsileaveaiqeagaevagvi 142
                   +++  v+  G ++++a+  +++++ +v +++
  MMETSP1061-20121228|30274_1 130 EILLTAVTEHGMALKHALDFLRNNEDIVLTAV 161
                  5667779999**************99998765 PP

  == domain 4    score: 5.4 bits;  conditional E-value: 0.0015
    TIGR00336 104 elkegkkvvvveDvittGtsileaveaiqeagaevagvi 142
                  e+k+++k vv++ v+  G ++  a  ++++++ +v +++
  MMETSP1061-20121228|30274_1 174 EMKNNEK-VVLDAVVQKGWALCFASDQLKNNENIVLAAV 211
                  4566666.578**********************999876 PP

>> TIGR04109  heme_ox_HugZ: heme oxygenase, HugZ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.0   0.00099         2      79     139 ..      62     120 ..      55     132 .. 0.78
   2 ?   -2.0   0.0      0.21   4.2e+02      25      43 ..     151     169 ..     141     185 .. 0.60
   3 !    5.4   0.1    0.0011       2.3      17      50 ..     193     225 ..     186     256 .. 0.76

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00099
    TIGR04109  79 qniaavkeelkefvesfksvilstldadGevvasYaPlvkeeediyiyisevsehfenlke 139
                  q+  a+k+   e+ ++ + ++l+++ ++G +   Ya +v+ + d  i+  +v++ +++l  
  MMETSP1061-20121228|30274_1  62 QDGRALKHATGELQQNDRNIVLAAVMQNGLA-LQYAGVVFRN-DREIVFTAVTKDYRALEY 120
                  6667788888899999999*********976.68**999765.555777888888888765 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.21
    TIGR04109  25 eevtnvllksvdedgldlk 43 
                  ++ ++++l++v ++g  l+
  MMETSP1061-20121228|30274_1 151 RNNEDIVLTAVRQNGWALQ 169
                  3455555555555555444 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0011
    TIGR04109  17 lvkkfgkveevtnvllksvdedgldlkvngqekl 50 
                  l+   ++ ++ +n++l +v ++gl l++ ++e l
  MMETSP1061-20121228|30274_1 193 LCFASDQLKNNENIVLAAVKQNGLALQYASNE-L 225
                  566667899*******************9554.4 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.18s 00:00:00.32 Elapsed: 00:00:00.19
# Mc/sec: 1813.11
//
Query:       MMETSP1061-20121228|30270_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      130  (0.0316919); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1677.36
//
Query:       MMETSP1061-20121228|30276_1  [L=540]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (540 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.19s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2457.73
//
Query:       MMETSP1061-20121228|30292_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|30283_1  [L=1116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.41
# Mc/sec: 3592.68
//
Query:       MMETSP1061-20121228|30280_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-65  220.1   0.0      2e-33  114.0   0.0    2.3  2  TIGR00322 diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
    1.5e-62  209.8   2.3    3.9e-33  112.7   0.4    3.2  2  TIGR00272 DPH2: diphthamide biosynthesis protein 2
    1.3e-18   65.1   0.0    6.4e-15   53.0   0.0    2.6  2  TIGR03682 arCOG04112: diphthamide biosynthesis enzyme Dph2


Domain annotation for each model (and alignments):
>> TIGR00322  diphth2_R: diphthamide biosynthesis enzyme Dph1/Dph2 domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.8   0.0   1.9e-33   2.5e-30      15     143 ..      82     232 ..      69     297 .. 0.76
   2 !  114.0   0.0   1.5e-36     2e-33     201     320 .]     426     549 ..     409     549 .. 0.92

  Alignments for each domain:
  == domain 1    score: 103.8 bits;  conditional E-value: 1.9e-33
    TIGR00322  15 rnakrVaLQfPdgllkdavevadll...........kekakgaevyilgdttyGaCcvdevaakhlgadliiHyGhsclspitsrlpvlyvfvkieid.veklvealkeal.......edkekkivllttvqyahaldeikkil......eeag 143
                  + + rVaLQfPd+ll+d+ ev+ ll           + +++   +++lgdtt  +Cc devaa hl+ad+++HyGh+clsp t +lpvly f+k+e+d ++ +v +l++a        +++++k ++l++v y+ha++ ++++       +  +
  MMETSP1061-20121228|30280_1  82 GSILRVALQFPDELLQDSPEVCWLLedkiredleecSGSNTTPFCFVLGDTTVNSCCPDEVAALHLNADVLVHYGHACLSP-TGTLPVLYSFGKSEFDdLDGAVAQLEAARtergiegSSSNNKFLVLYQVGYHHAMKALREQWmsqdddN--T 232
                  56679******************7777776666655566666779************************************.*************99724555557777667788999999*******************99985655331..2 PP

  == domain 2    score: 114.0 bits;  conditional E-value: 1.5e-36
    TIGR00322 201 vyvydpyssklee...eeseaerllrrRyaaiekakdakkvGIivgtlggqgrlelierlkellkkagkkaytilvgeinpakLanfpeiDafVvvaCprlsldds.kefekpvltpyEleial 320
                   ++y+p+s++l++     + ++rll+rR+++ +ka+da+++GI+v++l+ q+  +++++l+++l++a++ ay ++vg+inpakLanf+ei+ fV+vaC + sl+d  +e++ pv+tp Eleial
  MMETSP1061-20121228|30280_1 426 YWIYSPKSKTLRTnvsPPPAVRRLLKRRFFLTQKARDANVFGILVSNLSQQHLVDVVKSLQRILQDADRTAYSFAVGKINPAKLANFAEIETFVMVACREHSLLDMeREYPIPVITPMELEIAL 549
                  678999999999877678899*********************************************************************************9876156*************97 PP

>> TIGR00272  DPH2: diphthamide biosynthesis protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.3   0.0   1.1e-30   1.5e-27      49     139 ..      82     182 ..      48     215 .. 0.84
   2 !  112.7   0.4   2.8e-36   3.9e-33     265     494 ..     447     681 ..     431     683 .] 0.71

  Alignments for each domain:
  == domain 1    score: 94.3 bits;  conditional E-value: 1.1e-30
    TIGR00272  49 gneqrvaLqFPDellkdsekvvklleskfre.....skkk....vfvLaDtaYssCCvDevaaehvdaeavvhfGeaClsaisklpvvYvlGslpi.dldk 139
                  g   rvaLqFPDell+ds  v  lle+k re     s  +     fvL Dt+ +sCC Devaa h++a+++vh+G+aCls++  lpv+Y++G+    dld 
  MMETSP1061-20121228|30280_1  82 GSILRVALQFPDELLQDSPEVCWLLEDKIREdleecSGSNttpfCFVLGDTTVNSCCPDEVAALHLNADVLVHYGHACLSPTGTLPVLYSFGKSEFdDLDG 182
                  55679************************95222331222233359**********************************************864414555 PP

  == domain 2    score: 112.7 bits;  conditional E-value: 2.8e-36
    TIGR00272 265 sakLrrRyklveklrdagviGivvgtlgvdktreavnelrklikkagkkiYllavGkvnlvaklanfedidvfvllaCsessvids.kefyrPivtpfelelaLseevt....WaaDFrlsidevekle.egket.................kepsevsde.aepeFslisGkvvsssrrlraltlekleaednddskasvekrtasslvvkGvvstaaaylqdrsWkGLnddvdeaeddakleeGrsGiakGY 494
                   ++L+rR++l +k+rda+v Gi+v  l+ ++  ++v+ l++++++a++  Y +avGk+n +aklanf +i+ fv++aC e s++d+ +e+  P++tp ele+aL++ +     ++ D ++    +++le e++et                  + +++ d+  +p Fs+i+G++                 +   +s+ +  k  ++   v    s aa +l++r ++GL+++v ++e +a +  G  Gia  Y
  MMETSP1061-20121228|30280_1 447 RRLLKRRFFLTQKARDANVFGILVSNLSQQHLVDVVKSLQRILQDADRTAYSFAVGKIN-PAKLANFAEIETFVMVACREHSLLDMeREYPIPVITPMELEIALENLQWgmqaYSLDCQD---VMLRLEqERRETlgalgggsndnteenrnDNNDDINDDsDAPYFSMITGRYE--------------SRKSKTSSNDLDLKALPGQGQVTEYKSEAANFLKQREYQGLESKVGQTEAKAAVL-GMRGIASDY 681
                  4789*******************************************************.5***********************87268999************8654333342333322...2222221122221100000000000000022233333345677777777777..............2222223333333444455566777888**********************99875.999999988 PP

>> TIGR03682  arCOG04112: diphthamide biosynthesis enzyme Dph2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.3   0.0   9.1e-05      0.12       4      80 ..      86     175 ..      83     231 .. 0.64
   2 !   53.0   0.0   4.7e-18   6.4e-15     194     299 ..     445     552 ..     428     563 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 9.1e-05
    TIGR03682   4 kvllqlPeGLkrealeiaekl.........eekgve....vilsgepvfGaCDladdevlel.vDlivhlGHsplenvkseikvifieaks 80 
                  +v+lq+P+ L ++++e+   l         e++g +      + g+++   C   +  +l+l +D++vh+GH  l+  +   +v++   ks
  MMETSP1061-20121228|30280_1  86 RVALQFPDELLQDSPEVCWLLedkiredleECSGSNttpfCFVLGDTTVNSCCPDEVAALHLnADVLVHYGHACLS-PTGTLPVLYSFGKS 175
                  688888888887777665444332232223223333222235778888888888788888889**********997.46788888876665 PP

  == domain 2    score: 53.0 bits;  conditional E-value: 4.7e-18
    TIGR03682 194 eiekllrvrlakiskaldakkvgilvstkkGQlrkelaeelkklleekgkeallvlldeispdkllnl.eldavvvtaCPRia.iDdaerfkkpvltpeEleivlgkr 299
                   +++ll+ r++  +ka da+ +gilvs  + Q   +++++l++ l++++++a+  ++ +i+p kl n+ e++ +v++aC   + +D  +++  pv+tp Elei+l++ 
  MMETSP1061-20121228|30280_1 445 AVRRLLKRRFFLTQKARDANVFGILVSNLSQQHLVDVVKSLQRILQDADRTAYSFAVGKINPAKLANFaEIETFVMVACREHSlLDMEREYPIPVITPMELEIALENL 552
                  589*****************************************************************88*********87662577778***************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.37
# Mc/sec: 2436.45
//
Query:       MMETSP1061-20121228|30287_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   15.6   0.1     0.0018   15.1   0.1    1.2  1  TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
     0.0081   12.9   0.1      0.015   12.0   0.0    1.4  2  TIGR02037 degP_htrA_DO: peptidase Do
  ------ inclusion threshold ------
      0.022   12.8   0.0      0.041   11.9   0.0    1.5  1  TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system


Domain annotation for each model (and alignments):
>> TIGR01941  nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.1   1.3e-06    0.0018      65     116 ..     276     327 ..     236     337 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.3e-06
    TIGR01941  65 sacGGggscgqcrvrvvegggeilptekshiskr.eakegwrlscqvkvkedl 116
                    cG gg c+ c v v+  g+++l+ ++    +       wrl+c++ v   +
  MMETSP1061-20121228|30287_1 276 GNCGAGGLCRTCSVCVMA-GDDVLNPQRVAEKQMmADSPRWRLACKAVVGYGM 327
                  57***********99875.678887766544443044568******9987666 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   1.1e-05     0.015     236     305 ..     114     179 ..      94     195 .. 0.77
   2 ?   -4.3   0.0         1   1.4e+03     276     287 ..     326     337 ..     323     339 .. 0.55

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.1e-05
    TIGR02037 236 glLGvkiqevtkdlakslglekakGalvaevlkgspAekaGlkaGDvilkvngkkiks.aadlreaigtlk 305
                  g LG+++ e+    ++ +g+      +v+ +++g+pAe a l++GDv+ +v   + ++ +++ +++i++ +
  MMETSP1061-20121228|30287_1 114 GGLGIELLELAGGRSDGIGI-----TIVSGLVPGGPAEDAELNHGDVLSSVSLVRRRKqQQQQTNMISEQE 179
                  66788888888887777777.....499*********************9987655440445556666655 PP

  == domain 2    score: -4.3 bits;  conditional E-value: 1
    TIGR02037 276 GlkaGDvilkvn 287
                  G+k+G++i++vn
  MMETSP1061-20121228|30287_1 326 GMKEGEMIVRVN 337
                  455555555554 PP

>> TIGR02007  fdx_isc: ferredoxin, 2Fe-2S type, ISC system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     3e-05     0.041      31      91 ..     268     324 ..     235     337 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3e-05
    TIGR02007  31 lkaeieiehacekscacttchvivrkGfdsleeasekeedlldkawGleaesrlscqavva 91 
                  ++ + + e  c     c tc v v  G d l+ +   e++++  +    +  rl+c+avv+
  MMETSP1061-20121228|30287_1 268 KRFDTKSEGNCGAGGLCRTCSVCVMAGDDVLNPQRVAEKQMMADS----PRWRLACKAVVG 324
                  55567788899999************************9998764....677889988886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1800.33
//
Query:       MMETSP1061-20121228|30359_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 335.97
//
Query:       MMETSP1061-20121228|30352_1  [L=616]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (616 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2710.18
//
Query:       MMETSP1061-20121228|30371_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|30379_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|30393_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 473.96
//
Query:       MMETSP1061-20121228|30391_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.35
# Mc/sec: 1862.93
//
Query:       MMETSP1061-20121228|30407_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 447.62
//
Query:       MMETSP1061-20121228|30421_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 458.49
//
Query:       MMETSP1061-20121228|30431_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   11.3   0.1      0.019   11.0   0.0    1.1  1  TIGR03683 A-tRNA_syn_arch: alanine--tRNA ligase
      0.016   11.3   0.0      0.016   11.3   0.0    1.1  1  TIGR00344 alaS: alanine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR03683  A-tRNA_syn_arch: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   9.1e-06     0.019     528     550 ..       1      23 [.       1      29 [. 0.91

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 9.1e-06
    TIGR03683 528 ldktlfYpegGGqpaDtGvlkae 550
                  l++t+  ++gGGqp+D+G ++ +
  MMETSP1061-20121228|30431_1   1 LNRTVLHAQGGGQPTDHGSIRIQ 23 
                  79*****************9876 PP

>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   7.7e-06     0.016     486     506 ..       1      21 [.       1      74 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.7e-06
    TIGR00344 486 LdktvfYaesGGqegDkGyli 506
                  L++tv+ a++GGq +D+G++ 
  MMETSP1061-20121228|30431_1   1 LNRTVLHAQGGGQPTDHGSIR 21 
                  89*****************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 496.53
//
Query:       MMETSP1061-20121228|30422_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.1e-144  479.1   0.0     4e-144  478.8   0.0    1.0  1  TIGR00871 zwf: glucose-6-phosphate dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR00871  zwf: glucose-6-phosphate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  478.8   0.0  9.7e-148    4e-144       4     477 ..      48     509 ..      45     517 .. 0.94

  Alignments for each domain:
  == domain 1    score: 478.8 bits;  conditional E-value: 9.7e-148
    TIGR00871   4 vlvifGasGdLakkkllpalykLekegllseefkivGvarsdlskeefrkkvkealikkekeeaeekldeflqrlsyvsgd.vddkesykelaelleelekkae.tegnrlfYlalpPslfetiieqlkkaklaeegklsrvvvEKPfGkdlesakelnkeleevfkEeqiyriDHyLGKetvqnllvlRFanelfeplWnrryidevqitvaEelGvegRggyydkvGalrDvvqnHllqllalvamekPvsldadeirdekvkvlkalrkiekedekvvrgqYaagevqGksvkgyleeegvd.kdsktetfvAlkleidneRWagvPfylrtGKrlaekvteiviqfkkvplnl.fkesekdaepenelviriqPdegvelklnakkpglelevrevkldfsyasafkealpeaYerLlldallGdqtlfaredeveeaWkivdpilekwdankeplkeYeaGsrgPkeadellk 477
                   +v++GasGdLakkk++p+l +L++e+ll++ef i G+ars+ ++ee+r++++  lik+ ++e    +  fl+r++y sg+ + d+ +y+++ + l + e +a   ++nrlfYla+pP++f+     +kk +++++g ++rvvvEKPfG+dl++ +el ++l+e f+E+++yriDHyLGKe+vqnl+ +RF+n ++ep+Wnr++i++v it++E +G+egRggy+d++G++rD++qnHllq+l+l ame+P + dad++r+ kv+vlk ++ i+ e  ++++gqY           gy ++ +++ kd +++t++A+++ i + RW+gvPf+l++GK+l ek ++++  fk + +    ++ +k++ep  elv+r+qP+ ++el+ n k+pgl+++    k+ ++y++  + + p+aY rL+l ++ Gdq  f+r+de++ +W+i++p+l+++d++  ++  Y+  s+gPk + + +k
  MMETSP1061-20121228|30422_1  48 SIVVVGASGDLAKKKTYPSLLNLFEENLLPKEFIIYGYARSSKTHEELRQHLYPHLIKTGTREFI--VRGFLERCFYYSGKtYGDELAYSTMISDLAKYEGNAVtPTANRLFYLAVPPNVFGESGVVIKKVGMSTTG-WTRVVVEKPFGRDLDTCNELLQSLSEDFDEHHLYRIDHYLGKEVVQNLMLFRFGNPMWEPIWNRKSIESVTITFKEPFGTEGRGGYFDQFGIIRDILQNHLLQVLTLFAMEPPENDDADSVRNAKVEVLKNMDIITLE--DCLLGQY----------DGYSDDPTIEnKDTNCPTYAAIRCWIHTPRWEGVPFILQAGKNLDEKLVDVKARFKPARTLQsVQSFSKSLEP-SELVLRLQPNPALELHNNIKTPGLSFSPMRGKMTMNYEDIPELSNPDAYTRLILSVIRGDQRSFVRDDELRRSWEIFTPLLHAIDDTGVRPLPYKPKSEGPKDLADWMK 509
                  69*******************************************************99988854..599**999999886268999***********9987762579**************************887.****************************************************************************************************************************************99..9******..........79******963789******************************************87665405555556666.9*****************************************************************************************************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2460.65
//
Query:       MMETSP1061-20121228|30440_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-85  284.6   3.6    2.7e-85  284.2   2.5    1.1  1  TIGR00225 prc: C-terminal processing peptidase
    3.8e-60  201.7   0.7    4.6e-60  201.4   0.5    1.0  1  TIGR03900 prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
    3.6e-07   27.5   0.0    7.1e-07   26.5   0.0    1.4  1  TIGR02038 protease_degS: periplasmic serine peptidase DegS
    9.3e-07   25.9   0.1    1.6e-06   25.1   0.1    1.3  1  TIGR02037 degP_htrA_DO: peptidase Do
     0.0069   13.8   0.4      0.014   12.7   0.3    1.5  1  TIGR00036 dapB: dihydrodipicolinate reductase


Domain annotation for each model (and alignments):
>> TIGR00225  prc: C-terminal processing peptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  284.2   2.5   3.3e-88   2.7e-85       1     314 [.     142     456 ..     142     466 .. 0.95

  Alignments for each domain:
  == domain 1    score: 284.2 bits;  conditional E-value: 3.3e-88
    TIGR00225   1 reeyvkrrldekeevetaikeilaslndpytrylskeeakelsettsgeleGiGiqvqmeddeivivsple.gsPAekagikpgDkIikvdgksvagmel.ddavelirGkkgtkvkleieragkkktlelelkrekieletvkaevkkvegkkvgyirissFsehtaedvkkalkklekkkikglilDLRgNpGGllqeavelarlflkkgk.ivsvkdrngekeveykangkqklklplvvlvdrgsASAsEilagAlkdnkravivGektfGKGtvQqvrelndgsg.lkvTiakyytpngksiqkkGiepdiei 314
                  r+e+vk+++++ +e+  a+ +++++l d yt+yls+ ++++l +t +g l GiG+++ +++de+vivs +e +sPA+kag+ p+D  i+ +g++ +  +  dd++ ++rG+ g+kv ++++r g  +t ++ ++re i++++v++ + k++ k+vg+iri+sFs +t+  vk+a ++l++k++k +++DLR+NpGGll  +ve a lfl+++k iv+v++++g    e++ ++   ++++l  lvd+ +ASA+E++++A+k+n+ra+++Ge+tfGKG +Q++rel+dg+g ++vT+a+y tp++++i+k Gi+ +  +
  MMETSP1061-20121228|30440_1 142 RQELVKKKYKNMDEAHDAVANMMSKLGDKYTKYLSPAKYQSLVDTATGTLAGIGVEIATNKDELVIVSDVEpDSPAQKAGLLPKDIFIEGGGAKFDKASTpDDVALRLRGPVGSKVGVTVLRDG--ETKDFIIQREPIKVTSVRSYIAKSN-KNVGVIRIKSFSGTTSSTVKEAFQDLKNKGAKQILFDLRSNPGGLLPGGVETASLFLESNKpIVYVVSNKGVISAEETFENGFDTETKLTLLVDHNTASAAEVFTAAMKENGRATVIGEQTFGKGIIQTIRELSDGNGgVAVTVARYETPQHNDINKSGIAVEKSV 456
                  799****************************************************************999759*******************98877665399999****************87..67799******************99.88********************************************************9999************99999999999**************************************************9988*********************876555 PP

>> TIGR03900  prc_long_Delta: putative carboxyl-terminal-processing protease, deltaproteobacterial
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.4   0.5   5.6e-63   4.6e-60      89     399 ..     141     451 ..      76     467 .. 0.86

  Alignments for each domain:
  == domain 1    score: 201.4 bits;  conditional E-value: 5.6e-63
    TIGR03900  89 FiekhlrlteedlrdvEYAavnGlLstL.DPHsvlLePeafkemklktrGeFGGlGiviamRdrkltVl.rvlpetPAaraGlkakDrivki.deestvnmdlndavdrlRGpvdtkvtitvrReGldeakrleleRavikvesVeaklLegn..vGyvrlktFsantteeleaalqdlrskaqlkGlVlDlRgNpGGLLeqAievsdkFlsqGt.iVstvgaserreekkakedtseeakvPvvvlVdegSASAsEiVaGalknlDRaviiGrqtFGKGsVqvlrdatsadksaLKLtiAqYltpGDvsiqevGvv 399
                    ++ ++ + +++ ++   av+ ++s L D  +  L+P++++ +     G   G+G++ia    +l+++  v p++PA++aGl  kD  ++  +++     + +d   rlRGpv++kv +tv R+G  e+k + ++R+ ikv sV++ + + n  vG +r+k Fs++t++ +++a+qdl++k+ +k +  DlR+NpGGLL   +e + +Fl++ + iV +v++++    ++  e+    +++ +  lVd++ ASA+E+ + a+k++ Ra++iG qtFGKG +q +r+  s ++  + +t+A+Y tp    i + G+ 
  MMETSP1061-20121228|30440_1 141 MRQELVKKKYKNMDEAH-DAVANMMSKLgDKYTKYLSPAKYQSLVDTATGTLAGIGVEIATNKDELVIVsDVEPDSPAQKAGLLPKDIFIEGgGAKFDKASTPDDVALRLRGPVGSKVGVTVLRDG--ETKDFIIQREPIKVTSVRSYIAKSNknVGVIRIKSFSGTTSSTVKEAFQDLKNKG-AKQILFDLRSNPGGLLPGGVETASLFLESNKpIVYVVSNKGVISAEETFENG-FDTETKLTLLVDHNTASAAEVFTAAMKENGRATVIGEQTFGKGIIQTIRE-LSDGNGGVAVTVARYETPQHNDINKSGIA 451
                  44555554444444444.4666777777699*************9999************98888877725779*************866541556666667788889*****************9..899**************9999764334****************************.***************************97654********998888888887.66777899*****************************************9.5555669************9999999985 PP

>> TIGR02038  protease_degS: periplasmic serine peptidase DegS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   8.7e-10   7.1e-07     278     341 ..     204     269 ..     189     277 .. 0.82

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 8.7e-10
    TIGR02038 278 rgivvtevdPngPaaragllvrdvilkldnkevisaeelmdrvaelr.P.gskvlvtvlrkgkqle 341
                  + ++v +v+P++Pa +agll++d+ ++  + +   a +  d    lr P gskv vtvlr+g++  
  MMETSP1061-20121228|30440_1 204 ELVIVSDVEPDSPAQKAGLLPKDIFIEGGGAKFDKASTPDDVALRLRgPvGSKVGVTVLRDGETKD 269
                  4599*************************9999988877777777874259***********9765 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.1     2e-09   1.6e-06     255     329 ..     200     282 ..     188     332 .. 0.70

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 2e-09
    TIGR02037 255 lekakGalvaevlkgspAekaGlkaGDvilkvngkkiksaadlreaigtl..kpgkkvklkilRkgkekeikvtlk......e 329
                   +k + ++v++v ++spA+kaGl   D+ ++  g k ++a+       +l  ++g+kv +++lR+g++k+  ++ +       
  MMETSP1061-20121228|30440_1 200 TNKDELVIVSDVEPDSPAQKAGLLPKDIFIEGGGAKFDKASTPDDVALRLrgPVGSKVGVTVLRDGETKDFIIQREpikvtsV 282
                  56678899*****************************99887665554442279***************98877664433221 PP

>> TIGR00036  dapB: dihydrodipicolinate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.3   1.8e-05     0.014      69     123 ..     375     429 ..     354     437 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.8e-05
    TIGR00036  69 aekkadvliDfttpeavlenvkialekgvrlVvGTTGfseedlkelkdlaekkgv 123
                  +e+k  +l+D  t++a+   ++++ e+g   V+G   f +  ++++++l++ +g 
  MMETSP1061-20121228|30440_1 375 TETKLTLLVDHNTASAAEVFTAAMKENGRATVIGEQTFGKGIIQTIRELSDGNGG 429
                  48999********************************************997653 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 2317.14
//
Query:       MMETSP1061-20121228|30449_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-06   23.8   5.1       0.03   11.0   0.0    3.2  3  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    9.1e-05   19.2   2.8       0.05   10.2   0.0    3.1  3  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    0.00025   18.6   4.2       0.26    8.7   0.0    3.2  3  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0017   14.8   0.1     0.0026   14.2   0.0    1.1  1  TIGR03140 AhpF: alkyl hydroperoxide reductase, F subunit
  ------ inclusion threshold ------
       0.02   11.5   0.5       0.67    6.5   0.5    2.3  2  TIGR02028 ChlP: geranylgeranyl reductase
      0.022   11.4   0.0      0.031   10.9   0.0    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
      0.029    9.6   0.0      0.039    9.1   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
      0.042   10.6   3.3        1.6    5.4   0.1    2.7  3  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
      0.064   10.4   1.8      0.091    9.9   1.2    1.2  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
       0.37    7.2   4.4          3    4.2   0.6    3.1  3  TIGR03219 salicylate_mono: salicylate 1-monooxygenase


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.9    0.0013      0.54       2      19 ..      64      81 ..      63      99 .. 0.88
   2 !    5.8   0.0    0.0028       1.1     155     175 ..     236     256 ..     219     264 .. 0.83
   3 !   11.0   0.0   7.2e-05      0.03     282     319 ..     448     485 ..     442     495 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0013
    TIGR01988  2 ivIvGgGlvGlalAlaLa 19
                 +++vGgG +Gl++Al La
  MMETSP1061-20121228|30449_1 64 VAVVGGGAAGLSTALHLA 81
                 89***************8 PP

  == domain 2    score: 5.8 bits;  conditional E-value: 0.0028
    TIGR01988 155 kLlvgADGanSkvrqaagikt 175
                  +L+v+ADG nS +r+ +g ++
  MMETSP1061-20121228|30449_1 236 HLIVAADGMNSVIRKIYGGHV 256
                  79************9987655 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 7.2e-05
    TIGR01988 282 liGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeaverg 319
                  ++Gd   tv P+ +QG+ +G++ +aa+a+ la    +g
  MMETSP1061-20121228|30449_1 448 FVGDSFMTVDPILAQGFTFGMEGAAAMADSLASCLDQG 485
                  79***************************999766665 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.7     0.019       7.7       2      19 ..      64      81 ..      63      95 .. 0.90
   2 ?    3.9   0.0      0.01       4.1     150     171 ..     234     255 ..     221     265 .. 0.80
   3 !   10.2   0.0   0.00012      0.05     278     323 ..     446     490 ..     438     521 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.019
    TIGR01984  2 viivGgglvGlslAlaLs 19
                 v++vGgg +Gls+Al L+
  MMETSP1061-20121228|30449_1 64 VAVVGGGAAGLSTALHLA 81
                 89*************997 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.01
    TIGR01984 150 eakLlvaAdGanskvreslsia 171
                  + +L+vaAdG+ns +r+ +  +
  MMETSP1061-20121228|30449_1 234 DYHLIVAADGMNSVIRKIYGGH 255
                  5689************987655 PP

  == domain 3    score: 10.2 bits;  conditional E-value: 0.00012
    TIGR01984 278 vvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaall 323
                  + ++g++  t+ Pi +QGf  G+  ++++a+ l++   d G+a ++
  MMETSP1061-20121228|30449_1 446 IQFVGDSFMTVDPILAQGFTFGMEGAAAMADSLASC-LDQGSAGAT 490
                  5689****************************9988.587877655 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   1.7     0.065        26       3      20 ..      64      81 ..      63      87 .. 0.92
   2 !    8.7   0.0   0.00064      0.26     133     164 ..     230     262 ..     214     278 .. 0.74
   3 !    5.7   0.0    0.0054       2.2     265     295 ..     446     476 ..     405     478 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.065
    TIGR02032  3 vvvvGaGpaGssaAlrla 20
                 v vvG+G aG s+Al+la
  MMETSP1061-20121228|30449_1 64 VAVVGGGAAGLSTALHLA 81
                 679*************98 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.00064
    TIGR02032 133 kkevtakivigAdGakskvakklg.lkkekrel 164
                  k e +  ++++AdG +s ++k +g + +++r++
  MMETSP1061-20121228|30449_1 230 KTERDYHLIVAADGMNSVIRKIYGgHVAKRRRR 262
                  55666789*************999755444433 PP

  == domain 3    score: 5.7 bits;  conditional E-value: 0.0054
    TIGR02032 265 vllvGDAAglVkPltGeGIayamvagklAae 295
                  + +vGD+  +V+P+ + G  ++m+++++ a+
  MMETSP1061-20121228|30449_1 446 IQFVGDSFMTVDPILAQGFTFGMEGAAAMAD 476
                  4589********************9987665 PP

>> TIGR03140  AhpF: alkyl hydroperoxide reductase, F subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.3e-06    0.0026     314     376 ..      22      85 ..      16      89 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.3e-06
    TIGR03140 314 svivatGakWrelgvpGekeylgkGvayCphC.dGPlfkgk..kvaviGGGnsGieaaidlaGive 376
                  s ++++  + r   v+Ge + + +  ++ + C dG    g   +vav+GGG +G+  a+ la +v+
  MMETSP1061-20121228|30449_1  22 SAVLSSFVSLRR--VSGEYQCQHRCFSFGSACaDGSKSSGErlRVAVVGGGAAGLSTALHLAPLVT 85 
                  555555555554..79************99998999999973369*****************9986 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.5    0.0016      0.67       1      20 [.      62      81 ..      62      94 .. 0.88
   2 ?    2.2   0.0     0.032        13     119     164 ..     208     250 ..     142     258 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0016
    TIGR02028  1 lrvavvgggpagasaaetla 20
                 lrvavvggg ag s+a  la
  MMETSP1061-20121228|30449_1 62 LRVAVVGGGAAGLSTALHLA 81
                 8*************998887 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.032
    TIGR02028 119 elpedaddpytlhyveedktgasgtkktlevdavigadgansrvak 164
                  + pe ++ p ++   +e+   +s+ k+  +   ++ adg ns + k
  MMETSP1061-20121228|30449_1 208 DSPEPWSAPLLV---QENGPETSSQKTERDYHLIVAADGMNSVIRK 250
                  455556666554...44423334444445677899*******7755 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   7.4e-05     0.031     109     153 ..      31      81 ..       8     130 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.4e-05
    TIGR01316 109 lerfvadyarehGieee......eekapstkkkvaviGaGpaGlavasela 153
                  l r  ++y+ +h             k+ + + +vav+G G aGl+ a +la
  MMETSP1061-20121228|30449_1  31 LRRVSGEYQCQHRCFSFgsacadGSKSSGERLRVAVVGGGAAGLSTALHLA 81 
                  666666666666544433222224455566789**************9988 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.0   9.5e-05     0.039     531     558 ..      55      82 ..      42     137 .. 0.73

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 9.5e-05
    TIGR03315 531 pqlksekhkvaviGaGPaGlsagyflar 558
                  ++ ++e+ +vav+G+G aGls+++ la 
  MMETSP1061-20121228|30449_1  55 SKSSGERLRVAVVGGGAAGLSTALHLAP 82 
                  56778999****************9984 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.4      0.54   2.2e+02       3      19 ..      64      80 ..      62      84 .. 0.85
   2 ?    4.9   0.0    0.0056       2.3     168     189 ..     231     252 ..     164     257 .. 0.80
   3 ?    5.4   0.1    0.0039       1.6     336     375 ..     447     486 ..     443     495 .. 0.92

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.54
    TIGR01989  3 vvivGgGlvGlalAaal 19
                 v++vGgG +Gl+ A  l
  MMETSP1061-20121228|30449_1 64 VAVVGGGAAGLSTALHL 80
                 89********9988665 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0056
    TIGR01989 168 etlktklliGADGanSkvRkaa 189
                  ++   +l++ ADG+nS++Rk  
  MMETSP1061-20121228|30449_1 231 TERDYHLIVAADGMNSVIRKIY 252
                  4556789************975 PP

  == domain 3    score: 5.4 bits;  conditional E-value: 0.0039
    TIGR01989 336 ALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeavkeGa 375
                    vGD   +v P+  qG   G++ +++++ +la+ + +G 
  MMETSP1061-20121228|30449_1 447 QFVGDSFMTVDPILAQGFTFGMEGAAAMADSLASCLDQGS 486
                  579*******************************999985 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   1.2   0.00022     0.091       1      18 [.      64      81 ..      64     101 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.00022
    TIGR03467  1 vvvvGgGlAGLaAAveLa 18
                 v+vvGgG AGL+ A++La
  MMETSP1061-20121228|30449_1 64 VAVVGGGAAGLSTALHLA 81
                 89*************998 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.6    0.0073         3       1      20 [.      62      81 ..      62      89 .. 0.92
   2 ?    1.5   0.0     0.049        20     144     183 ..     231     268 ..     225     271 .. 0.79
   3 ?   -0.0   0.0      0.14        58     259     282 ..     381     404 ..     370     415 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0073
    TIGR03219  1 lrvaiiGGGiaGvalalels 20
                 lrva++GGG aG++ al+l+
  MMETSP1061-20121228|30449_1 62 LRVAVVGGGAAGLSTALHLA 81
                 79**************9985 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.049
    TIGR03219 144 teyradlligadGiksalrdyvlegagqaaveprfsGtsa 183
                  te    l+++adG++s +r+    g + a+ + rf Gt a
  MMETSP1061-20121228|30449_1 231 TERDYHLIVAADGMNSVIRKI--YGGHVAKRRRRFLGTGA 268
                  56667899***********84..46667888889999876 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.14
    TIGR03219 259 kremldafagwgdaarvlleliea 282
                  k+ +l+af +w d +r l+e+ +a
  MMETSP1061-20121228|30449_1 381 KAMLLEAFGDWHDPIRQLVEATPA 404
                  445689*************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.36u 0.16s 00:00:00.52 Elapsed: 00:00:00.31
# Mc/sec: 2324.71
//
Query:       MMETSP1061-20121228|30476_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1153.47
//
Query:       MMETSP1061-20121228|30517_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 623.28
//
Query:       MMETSP1061-20121228|30509_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-29   99.3   1.3    9.7e-29   99.0   0.9    1.1  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    5.4e-26   88.8   0.1    1.1e-25   87.8   0.0    1.6  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    5.8e-10   37.1   0.0    1.1e-09   36.2   0.0    1.5  1  TIGR01068 thioredoxin: thioredoxin
     0.0015   16.0   0.0     0.0028   15.1   0.0    1.5  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0055   15.0   0.3      0.021   13.1   0.1    1.9  2  TIGR02200 GlrX_actino: glutaredoxin-like protein
  ------ inclusion threshold ------
      0.031   11.0   3.4      0.043   10.6   2.3    1.2  1  TIGR00998 8a0101: efflux pump membrane protein


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.0   0.9   1.4e-31   9.7e-29       3     184 ..      18     196 ..      16     217 .. 0.71

  Alignments for each domain:
  == domain 1    score: 99.0 bits;  conditional E-value: 1.4e-31
    TIGR01130   3 vleltkenfddlikenelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDatee.kelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqsgPaskeletvedlekllekkevvvvgvfkdldselvetfl.evaeklrdkfkavasssdeaalkkl.eakkdevvlvk 184
                   +elt++nfd+l ++ ++v ++ +APWCGHCk+++P+++k  +e k+++ +  +a  D+t++ k +++  gv+G+PtLk+   +   +dY+G+R+ +++ k++ +  +P  +  ++++  +  ++kke+  +++  ++d e++ +   +  e++++kfk  + ++ +a++++l ++k+++ ++vk
  MMETSP1061-20121228|30509_1  18 AVELTESNFDEL-TAGKVVFIKMFAPWCGHCKKMKPDWDKLMDEYKDSE-TQLIADADCTADgKPICDANGVRGFPTLKYGDPS-DLQDYQGARSYDALKKFIDSELKPVCS-PANLDLCD-DAKKKEIEALFALDSADLEAKIAAEeKKIEAADEKFK-SGVEELQAKYQSLmTEKEETEAAVK 196
                  589******996.6789*****************************999.5579*******999***************98877.58**********************995.44444444.4444455555555544433333333033334444444.4444444444444034444444444 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.8   0.0   1.7e-28   1.1e-25       1     103 [.      21     119 ..      21     121 .. 0.92
   2 ?   -2.5   0.0       2.1   1.4e+03      32      40 ..     177     185 ..     152     202 .. 0.59

  Alignments for each domain:
  == domain 1    score: 87.8 bits;  conditional E-value: 1.7e-28
    TIGR01126   1 lvaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdatae.kelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefvee 103
                  l+++nfdel +   k+v+++ +aPWCGhCkk+ P ++kl +e+k++e +  ia+ d+ta+ k +++  +v+gfPtlk+ +  +   +dy+G+R+ ++l +f+++
  MMETSP1061-20121228|30509_1  21 LTESNFDELTA--GKVVFIKMFAPWCGHCKKMKPDWDKLMDEYKDSE-TQLIADADCTADgKPICDANGVRGFPTLKYGDPSD--LQDYQGARSYDALKKFIDS 119
                  6899****988..8******************************876.688********96678999***********99988..69**************986 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 2.1
    TIGR01126  32 laPeyekla 40 
                  l+ +y++l 
  MMETSP1061-20121228|30509_1 177 LQAKYQSLM 185
                  333444444 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.2   0.0   1.6e-12   1.1e-09       2      99 ..      22     119 ..      21     121 .. 0.83

  Alignments for each domain:
  == domain 1    score: 36.2 bits;  conditional E-value: 1.6e-12
    TIGR01068   2 seenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqe...iaakygirsiPtlllfkngkevkrvvGakpkaalkeliek 99 
                  +e+nf+e +a   k+v +  +A+WCg Ck + P  ++l +e++++ + +  + d + +   i  + g+r  Ptl  + + +  +   Ga + +alk++i++
  MMETSP1061-20121228|30509_1  22 TESNFDELTAG--KVVFIKMFAPWCGHCKKMKPDWDKLMDEYKDSETQLIADADCTADgkpICDANGVRGFPTL-KYGDPSDLQDYQGARSYDALKKFIDS 119
                  67889988877..49***************************9988888778775443223999*********7.46677788889999999999999876 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.1e-06    0.0028      57      88 ..      26      57 ..       7      69 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.1e-06
    TIGR00385 57 aevlkkgklvLlnvwasWCptCraehplLkel 88
                  ++l+ gk+v + ++a WC+ C++  p   +l
  MMETSP1061-20121228|30509_1 26 FDELTAGKVVFIKMFAPWCGHCKKMKPDWDKL 57
                 478999*****************988876666 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   3.1e-05     0.021       7      62 ..      41     100 ..      37     111 .. 0.74
   2 ?   -1.4   0.0         1   6.8e+02      18      40 ..     172     194 ..     168     211 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 3.1e-05
    TIGR02200   7 tswCgyCaslkrtLdkdgaeYevvd..iekdeeaadyvksv..ndGnktvPtVkfadGst 62 
                  ++wCg C+++k   dk   eY+  +  +  d + ++  k +   +G +  Pt k+ d s 
  MMETSP1061-20121228|30509_1  41 APWCGHCKKMKPDWDKLMDEYKDSEtqLIADADCTADGKPIcdANGVRGFPTLKYGDPSD 100
                  79*******************865522345555555556662235888999999999775 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 1
    TIGR02200  18 rtLdkdgaeYevvdiekdeeaad 40 
                   ++++  a+Y+    ek+e  a+
  MMETSP1061-20121228|30509_1 172 SGVEELQAKYQSLMTEKEETEAA 194
                  56677788899888888877665 PP

>> TIGR00998  8a0101: efflux pump membrane protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   2.3   6.3e-05     0.043      64     140 ..     138     211 ..     128     217 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 6.3e-05
    TIGR00998  64 VkqGdvLvklDptdaelalekaeaklaalvrkvkqleikvkklqakveslkikleqareklkqaeldleRresllkk 140
                   k+ ++L+ lD +d e++++  e+k+ a+++k+k     v++lqak +sl  + e++ +++k a l l + + ++k+
  MMETSP1061-20121228|30509_1 138 KKEIEALFALDSADLEAKIAAEEKKIEAADEKFKSG---VEELQAKYQSLMTEKEETEAAVKAAGLGLMKSVRVAKN 211
                  467799**************************9875...56777777888888888888788888877777777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 846.28
//
Query:       MMETSP1061-20121228|30537_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|30546_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 371.97
//
Query:       MMETSP1061-20121228|30543_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.24
# Mc/sec: 2683.78
//
Query:       MMETSP1061-20121228|30551_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   16.0   0.0     0.0051   14.6   0.0    1.7  1  TIGR02571 ComEB: ComE operon protein 2


Domain annotation for each model (and alignments):
>> TIGR02571  ComEB: ComE operon protein 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   1.2e-06    0.0051      66     120 ..      78     138 ..      55     145 .. 0.71

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 1.2e-06
    TIGR02571  66 rtihaemnallqcakfgvste.....eaeiy.vthfpclqctksiiqagikkvyyakdykn 120
                   t hae+++++  +    + +     ++ i+  th pc+ c+ si+  g +k +y   y++
  MMETSP1061-20121228|30551_1  78 PTFHAEVKCIVSWSENTPAKDrgpiaQSSIFlATHEPCMMCVSSILWGGWNKCWYFFGYQE 138
                  5889999999876554444331111134454279*********************998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1005.85
//
Query:       MMETSP1061-20121228|30573_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|30586_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 364.54
//
Query:       MMETSP1061-20121228|30607_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 304.59
//
Query:       MMETSP1061-20121228|30612_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 604.37
//
Query:       MMETSP1061-20121228|30630_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|30634_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.17
# Mc/sec: 652.18
//
Query:       MMETSP1061-20121228|30649_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|30646_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.042   11.1   0.0      0.066   10.5   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
       0.25    7.9   8.5       0.37    7.3   5.9    1.2  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
        0.3    8.4   4.3       0.54    7.6   3.0    1.4  1  TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.8e-05     0.066      94     129 ..     332     368 ..     292     384 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.8e-05
    TIGR03724  94 ellkevGelvgklHkagivhgDlttsNiiv.kddkly 129
                  +++  v + v  +H+ g+v+ Dl  +N+++  d+++ 
  MMETSP1061-20121228|30646_1 332 KAAVGVCRCVEAMHSSGLVWTDLKAENFVLfGDGEVR 368
                  566678899*******************993455555 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   5.9   0.00027      0.37     214     255 ..     148     190 ..     120     208 .. 0.83

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00027
    TIGR02927 214 ekpe.kseakseekpeaaepkaekkeepkpepkaeekapaaka 255
                  ++p+  ++ak e kp++ + ka++k++p+p   a++k+pa+  
  MMETSP1061-20121228|30646_1 148 PQPAkANNAKKETKPAPVKAKAKPKPKPAPSKPAAAKKPAPAQ 190
                  5565357899999999999999999999999888889988765 PP

>> TIGR03593  yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.0    0.0004      0.54       5      72 ..     102     172 ..      98     200 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.0004
    TIGR03593   5 ilavaLsfvilllwqawqkdpkpepqkppaaaqqaesqsaa....aaaaasaaaaasadapsaaaaaaaaaa 72 
                  + +v Ls + + l +a+  +++ ++q+p++++ + + ++ +    ++++ ++a++a++++++a+++a+a+++
  MMETSP1061-20121228|30646_1 102 VVVVTLSGSKYRLLKALPGKQPTPKQQPKQQQPA-QRSTMSlfggSQPQPAKANNAKKETKPAPVKAKAKPK 172
                  6667777777777777777755544444443333.3333337999444444555555555555555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 2015.83
//
Query:       MMETSP1061-20121228|30663_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 465.10
//
Query:       MMETSP1061-20121228|30682_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1018.20
//
Query:       MMETSP1061-20121228|30695_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 345.69
//
Query:       MMETSP1061-20121228|30712_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 304.15
//
Query:       MMETSP1061-20121228|30704_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.37
# Mc/sec: 1541.06
//
Query:       MMETSP1061-20121228|30722_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.30
# Mc/sec: 431.16
//
Query:       MMETSP1061-20121228|30726_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-10   35.0   0.1    3.9e-09   32.7   0.0    1.8  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.8e-05   20.5   0.0    0.00011   19.6   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.5   0.3      0.02        41    1116    1156 ..     126     166 ..     114     182 .. 0.83
   2 !   32.7   0.0   1.9e-12   3.9e-09      91     181 ..     227     313 ..     215     334 .. 0.85

  Alignments for each domain:
  == domain 1    score: -0.5 bits;  conditional E-value: 0.02
    TIGR03903 1116 aagdreaaravadavlelsdrygLpaverYaaviraWvvrD 1156
                     + r+ a+  ++av++l+   +  av r+a++i+  +  D
  MMETSP1061-20121228|30726_1  126 QDKSRQDAQHYVNAVVDLATEARFLAVIRHANIIKMRAMDD 166 
                   345688999*************************9887766 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 1.9e-12
    TIGR03903  91 alaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivle 181
                  al+  h   v++RDLkP+ni   ++      k+ DFG++  l   ++ +  t  +t++  GsP Y aPe     p    +D Y++ ++   
  MMETSP1061-20121228|30726_1 227 ALSYLHGMSVIYRDLKPDNIGFDVR---GDVKIFDFGLAKELDTRKKLADGTYNLTGD-TGSPRYMAPEVFLSKPYNETADNYSFSILCWQ 313
                  78888***************87555...5689********999999988888888877.5***********************99876655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   5.3e-08   0.00011      85     147 ..     210     273 ..     190     295 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 5.3e-08
    TIGR03724  85 kdlleekelellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkkskevedkav 147
                  k+++  ++l+++++++ +++ lH   +++ Dl + Ni ++  +++ + DfGL+k  ++ ++ a 
  MMETSP1061-20121228|30726_1 210 KNTFWVERLSVAYDLACALSYLHGMSVIYRDLKPDNIGFDvRGDVKIFDFGLAKELDTRKKLAD 273
                  33333334499999************************964899**********9888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.70
# Mc/sec: 769.31
//
Query:       MMETSP1061-20121228|30746_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   12.6   0.0      0.041   12.3   0.0    1.1  1  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF


Domain annotation for each model (and alignments):
>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0     1e-05     0.041      45     105 ..      12      72 ..       3      73 .. 0.94

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 1e-05
    TIGR02795  45 lGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikr 105
                  +G  + + + ++++++af++ +++   +   +  l+  +++ qelg  ++A + +  vi+r
  MMETSP1061-20121228|30746_1  12 VGMCYRRLGRMTASIRAFRASIEAVGLKFVQSATLISCAQVEQELGLFDEAAEKFASVIDR 72 
                  58889999*************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|30741_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-20   68.7   0.2    3.8e-19   66.6   0.1    1.9  2  TIGR01068 thioredoxin: thioredoxin
    3.4e-15   54.1   0.1    1.3e-14   52.2   0.0    1.8  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
      2e-12   45.3   0.6    2.5e-12   44.9   0.4    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    7.8e-06   23.5   0.0    1.3e-05   22.8   0.0    1.5  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
    3.2e-05   21.6   0.1    4.5e-05   21.1   0.1    1.2  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
    6.7e-05   20.8   0.3    0.00015   19.6   0.1    1.7  2  TIGR00411 redox_disulf_1: redox-active disulfide protein 1
    0.00059   17.3   0.0    0.00083   16.8   0.0    1.4  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0014   15.8   0.0     0.0072   13.4   0.0    1.9  1  TIGR02740 TraF-like: TraF-like protein
     0.0029   15.9   0.4     0.0087   14.4   0.2    1.9  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
  ------ inclusion threshold ------
      0.017   13.2   0.1      0.046   11.8   0.0    1.7  1  TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH
      0.024   12.4   0.0      0.037   11.8   0.0    1.4  1  TIGR04019 B_thiol_YtxJ: bacillithiol system protein YtxJ


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0      0.55   2.1e+02      68      82 ..      25      39 ..      10      48 .. 0.79
   2 !   66.6   0.1     1e-21   3.8e-19       3      97 ..      47     143 ..      44     147 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.55
    TIGR01068 68 siPtlllfkngkevk 82
                 + Pt+l ++ g+ v+
  MMETSP1061-20121228|30741_1 25 AFPTILSIRGGDIVH 39
                 68******9999876 PP

  == domain 2    score: 66.6 bits;  conditional E-value: 1e-21
    TIGR01068   3 eenfeetvassdklvlvDfwAeWCgpCkmlaPvleelakelee.kvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGak.pkaalkeli 97 
                  e+ +ee  +++++lv++ f  + C pCk +aP++ el++e e+ ++ ++K+nvde++ +a ky+++  P  l++k+g+++ ++vG k  +a+l +++
  MMETSP1061-20121228|30741_1  47 EKVVEENSNDDNQLVVIYFSSTNCPPCKRVAPLFTELSEEFEDeNIVFCKVNVDENPLTADKYQVTGWPAFLFLKKGEKIMEIVGGKlAEATLYDWV 143
                  5667888899999**************************9875279**********************************99998541566677766 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       0.9   3.4e+02      66      82 ..      20      36 ..       6      47 .. 0.71
   2 !   52.2   0.0   3.4e-17   1.3e-14       4     102 ..      48     144 ..      43     147 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.9
    TIGR01126 66 kfkvsgfPtlkffkkgk 82
                 + +  +fPt+  ++ g+
  MMETSP1061-20121228|30741_1 20 HRSSLAFPTILSIRGGD 36
                 34445899999888776 PP

  == domain 2    score: 52.2 bits;  conditional E-value: 3.4e-17
    TIGR01126   4 enfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefve 102
                  + ++e  +d+n+ v++ f +  C  Ck++aP + +l++e+++e  +++  kv+ +++  +a+k++v+g+P   f+kkg+k  +   G+  +++l+++v+
  MMETSP1061-20121228|30741_1  48 KVVEENSNDDNQLVVIYFSSTNCPPCKRVAPLFTELSEEFEDE--NIVFCKVNVDENPLTADKYQVTGWPAFLFLKKGEKIMEIVGGKLAEATLYDWVK 144
                  5667778899999****************************75..6*********************************97777777778889999986 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.4   6.6e-15   2.5e-12     357     471 ..      52     164 ..      38     168 .] 0.77

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 6.6e-15
    TIGR01130 357 eivldetKdVLvefYApWCGHCkkLapiYeelaekykkeedvviakldataNdvpe..fevegFPTilfvpagkksepvkyegdRtle.dlvkFikknatielegkkeeeeekdeeke 471
                  e  +d++  V + f    C  Ck+ ap + el+e++++e ++v  k++  +N + +  ++v+g+P  lf+++g+k  +++  g++  e +l++++k  a +  ++++   +++d+++e
  MMETSP1061-20121228|30741_1  52 ENSNDDNQLVVIYFSSTNCPPCKRVAPLFTELSEEFEDE-NIVFCKVNVDENPLTAdkYQVTGWPAFLFLKKGEK--IMEIVGGKLAEaTLYDWVKLMAPKGDKEEQA--DNEDATDE 164
                  4457888889999999**********************9.************998778*****************..5666665555425777877777664333331..33333333 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   3.4e-08   1.3e-05      36      86 ..      43      94 ..       1     125 [. 0.68

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 3.4e-08
    TIGR02738 36 aaqdekpvgrkvlledyklvlfyqs.tCpyChqfapvLkqlsqqtglevlay 86
                  +++ek v+ + + +++ +v++++s +Cp C++ ap +++ls++++ e +++
  MMETSP1061-20121228|30741_1 43 IEETEKVVEENSNDDNQLVVIYFSStNCPPCKRVAPLFTELSEEFEDENIVF 94
                 334444446777777777777776626****************997655444 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   1.2e-07   4.5e-05      15      93 ..      54     129 ..      41     135 .. 0.79

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 1.2e-07
    TIGR02187  15 kelknpvelvvFtdeskekCeyCeetkqlleelsevsdklkleiydldteedkekvekykvervPtvileeegskdiei 93 
                  ++  n+  ++ F++   ++C  C+++  l +else  +  ++   +++ +e+  +++ky+v   P+  + ++g+k +ei
  MMETSP1061-20121228|30741_1  54 SNDDNQLVVIYFSS---TNCPPCKRVAPLFTELSEEFEDENIVFCKVNVDENPLTADKYQVTGWPAFLFLKKGEKIMEI 129
                  33344444555555...67***************999999999999999999999****************99988877 PP

>> TIGR00411  redox_disulf_1: redox-active disulfide protein 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       2.1   7.8e+02      17      31 ..      46      60 ..      43      63 .. 0.73
   2 !   19.6   0.1   4.1e-07   0.00015       5      58 ..      64     118 ..      60     140 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 2.1
    TIGR00411 17 akkvveevakeegdk 31
                  +kvvee  ++  ++
  MMETSP1061-20121228|30741_1 46 TEKVVEENSNDDNQL 60
                 578999988876655 PP

  == domain 2    score: 19.6 bits;  conditional E-value: 4.1e-07
    TIGR00411   5 lftsPtCPyCPkakkvveevakeegdkvev.ekinvmedlkkaleyGimavPaiv 58 
                   f s  CP C +      e  +e+ d  +v  k+nv+e++  a +y + + Pa  
  MMETSP1061-20121228|30741_1  64 YFSSTNCPPCKRVAPLFTELSEEFEDENIVfCKVNVDENPLTADKYQVTGWPAFL 118
                  599*********************997655279*******************976 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.2e-06   0.00083      27      91 ..      22      86 ..       1     113 [. 0.85

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.2e-06
    TIGR00385 27 dikelesaligkpvpaekeaelkekvqlltaevlkkgklvLlnvwasWCptCraehplLkelake 91
                    + +  l+ ++ + +++++++e+ ++++++     +lv++ + ++ Cp+C+   pl +el++e
  MMETSP1061-20121228|30741_1 22 SSLAFPTILSIRGGDIVHLTTIEETEKVVEENSNDDNQLVVIYFSSTNCPPCKRVAPLFTELSEE 86
                 5556788899999999**************99999999************************986 PP

>> TIGR02740  TraF-like: TraF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.9e-05    0.0072     170     263 ..      57     141 ..      35     153 .. 0.65

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.9e-05
    TIGR02740 170 kagl.ffffksd.CklCeqqapilkaleery...gievlpvSvDGkplpggkfpnvrvdagiaekLkirtvPavvlvdpkpkqikpisfGvlsadelvd 263
                  ++ l   +f s+ C+ C+  ap    l+e++   +i    v vD +pl               +k +++  Pa  ++++ +++i+ i  G l++ +l d
  MMETSP1061-20121228|30741_1  57 DNQLvVIYFSSTnCPPCKRVAPLFTELSEEFedeNIVFCKVNVDENPLTA-------------DKYQVTGWPAFLFLKK-GEKIMEIVGGKLAEATLYD 141
                  4433034455556**************987643378889999**999999.............4555666666555544.6666666666666666655 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.2   2.3e-05    0.0087       3      39 ..      62     106 ..      60     115 .. 0.63

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.3e-05
    TIGR02196   3 kvY.ttpwCppCkkak.......eyLkskgiafeeidvekdsaaa 39 
                   +Y ++++CppCk++        e ++ ++i f +++v++++  a
  MMETSP1061-20121228|30741_1  62 VIYfSSTNCPPCKRVAplftelsEEFEDENIVFCKVNVDENPLTA 106
                  44438899*****98711111114555677777777777776555 PP

>> TIGR02194  GlrX_NrdH: glutaredoxin-like protein NrdH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   0.00012     0.046       2      48 ..      63     116 ..      61     127 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 0.00012
    TIGR02194   2 tvysknnCvqCkatkka.......leeqniafeeinideqpeavdyvkelGfra 48 
                  + +s  nC  Ck +          +e++ni f ++n+de+p ++d+ +  G+ a
  MMETSP1061-20121228|30741_1  63 IYFSSTNCPPCKRVAPLftelseeFEDENIVFCKVNVDENPLTADKYQVTGWPA 116
                  5578899999998765411111116779999*************9999988865 PP

>> TIGR04019  B_thiol_YtxJ: bacillithiol system protein YtxJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   9.8e-05     0.037       3      58 ..      40      99 ..      38     128 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 9.8e-05
    TIGR04019  3 ltseeqleeilees...kekpvlifKhSttCpiSamalkelekeleeeeee.vkvyyldl 58
                 lt++e+ e+++ee    +++ v+i+  St+Cp  +++   +++  ee e+e + +  +++
  MMETSP1061-20121228|30741_1 40 LTTIEETEKVVEENsndDNQLVVIYFSSTNCPPCKRVAPLFTELSEEFEDEnIVFCKVNV 99
                 78888888888754111467899*************999998888777764354444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 671.94
//
Query:       MMETSP1061-20121228|30743_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1541.29
//
Query:       MMETSP1061-20121228|30750_1  [L=999]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.11s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 3216.03
//
Query:       MMETSP1061-20121228|30763_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.38
# Mc/sec: 229.24
//
Query:       MMETSP1061-20121228|30795_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 521.36
//
Query:       MMETSP1061-20121228|30796_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 447.30
//
Query:       MMETSP1061-20121228|30797_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.11s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 2518.35
//
Query:       MMETSP1061-20121228|30799_1  [L=772]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (772 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 2830.43
//
Query:       MMETSP1061-20121228|30813_1  [L=686]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (686 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 2920.79
//
Query:       MMETSP1061-20121228|30821_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-06   24.1  34.8    5.9e-06   23.4  24.1    1.3  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
  ------ inclusion threshold ------
      0.021   11.1  44.1      0.046   10.0  30.6    1.4  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
        1.1    5.2   5.9        1.2    5.1   4.1    1.2  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4  24.1   4.3e-09   5.9e-06      13     100 ..     142     228 ..     133     254 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 4.3e-09
    TIGR01622  13 ssreadrdrerdksrersRdrsrdRersrskerdrdfdrrdrdrdkyrdrerrsrkrreserererekerrredevrrkrkeredrre 100
                  ss+ ++  + ++++r r+Rdr+rdR+r ++++rdr++d r++dr +    + rs k+re+ererer+ +r    ++++ + er+++ +
  MMETSP1061-20121228|30821_1 142 SSSASEAAPSSSRERGRDRDRDRDRDRHHDRDRDRHHDDRKKDRHHHHH-HHRSSKKRERERERERDPSRSSSSSRQQPSTERKEKVH 228
                  4555688899999999**********************99999987665.55677788999999999987665555555555555544 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0  30.6   3.3e-05     0.046      20      96 ..     151     225 ..     142     234 .. 0.73

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.3e-05
    TIGR01642  20 skeRsRkRsrdrsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleedsrrrSRdrirrrsrsssseskerrrsr 96 
                  s+ R+R R+rdr+rdRdR++  r+r r++d+R++dr +++++++ss  +  r r R+r+++rs sss+++   +r+ 
  MMETSP1061-20121228|30821_1 151 SSSRERGRDRDRDRDRDRHHD-RDRDRHHDDRKKDRHHHHHHHRSSK-KRERERERERDPSRSSSSSRQQPSTERKE 225
                  788999999999999999987.**************99999886554.44555666666666666666655444443 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   4.1    0.0009       1.2     339     426 ..     153     241 ..      40     404 .. 0.65

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0009
    TIGR00934 339 ersktidraeasdleeldrakdfqkmveknvka...akrkkknfkkreanlklfeksryakksdrneedngnkkdasksneseevsldsee 426
                  +r++ +dr +++d ++ ++    ++ +++  k+   ++++++++kkre++ + +e+ ++ ++s+  ++ ++++k++ ++  + e+ +++  
  MMETSP1061-20121228|30821_1 153 SRERGRDRDRDRDRDRHHDRD-RDRHHDDRKKDrhhHHHHHRSSKKRERERE-RERDPSRSSSSSRQQPSTERKEKVHKPIDPEMLFSNLS 241
                  222223333333332222211.222222222220002222222222222222.22222222222222223334444555555444444333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.36
# Mc/sec: 1976.17
//
Query:       MMETSP1061-20121228|30858_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 635.95
//
Query:       MMETSP1061-20121228|30865_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   36.1   0.0    1.8e-09   35.4   0.0    1.3  1  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ


Domain annotation for each model (and alignments):
>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   4.5e-13   1.8e-09      41     139 ..     192     285 ..     188     286 .] 0.91

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 4.5e-13
    TIGR03042  41 qveeieaakdrldeLkslvakkdWvetrnlihGPlgevrremtylnqsLlpkdkkeakklakelkedLeklDeAAklqdkseaqkayqevaadldayld 139
                   ve+i+ a + l+e+  lv+ k W e+  ++ GP+ge++++++ l+        ++ +kla+++kedL  + +A++++++ ++ k  + +++dl  +l+
  MMETSP1061-20121228|30865_1 192 LVERIRLATSALAEIPPLVERKKWNEITGILTGPMGELSSTLNLLAG-----TDARKTKLARKVKEDLFGMGTATTQRQTDVILKYHALAIKDLAVFLE 285
                  58999999********************************9976554.....5566789**************************99999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1572.87
//
Query:       MMETSP1061-20121228|30857_1  [L=655]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.9   0.0      0.046   11.1   0.0    1.3  1  TIGR03856 F420_MSMEG_2906: probable F420-dependent oxidoreductase, MSMEG_2906 family


Domain annotation for each model (and alignments):
>> TIGR03856  F420_MSMEG_2906: probable F420-dependent oxidoreductase, MSMEG_2906 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.1e-05     0.046      66     110 ..     259     304 ..     225     310 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.1e-05
    TIGR03856  66 rveiGllvtcnsyrnpdlladmartvdhisgGr.lilGlGaGwyek 110
                    +iG+l+ +n+ r  d l +  + +dhi + r  i G GaG + k
  MMETSP1061-20121228|30857_1 259 AGDIGILLQANATRSIDWLNEHGKCLDHIVHKRsTIDGAGAGAFAK 304
                  348***************************9994588*****9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (655 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2881.76
//
Query:       MMETSP1061-20121228|30883_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1778.71
//
Query:       MMETSP1061-20121228|30922_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 442.16
//
Query:       MMETSP1061-20121228|30929_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 477.67
//
Query:       MMETSP1061-20121228|30926_1  [L=696]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (696 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 3533.25
//
Query:       MMETSP1061-20121228|30948_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 861.07
//
Query:       MMETSP1061-20121228|30937_1  [L=571]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (571 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2598.82
//
Query:       MMETSP1061-20121228|30949_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 2557.73
//
Query:       MMETSP1061-20121228|30954_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 389.68
//
Query:       MMETSP1061-20121228|30968_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|30994_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|30990_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.34
# Mc/sec: 1991.48
//
Query:       MMETSP1061-20121228|31025_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 580.75
//
Query:       MMETSP1061-20121228|31019_1  [L=266]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (266 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 1300.34
//
Query:       MMETSP1061-20121228|31035_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|31044_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-99  328.9   2.3    1.1e-98  328.4   1.6    1.2  1  TIGR00019 prfA: peptide chain release factor 1
      1e-53  180.5   7.7    2.2e-40  136.6   0.1    2.0  2  TIGR00020 prfB: peptide chain release factor 2
    2.5e-28   96.8   1.8    2.3e-26   90.4   0.4    2.2  2  TIGR03072 release_prfH: putative peptide chain release factor H


Domain annotation for each model (and alignments):
>> TIGR00019  prfA: peptide chain release factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  328.4   1.6  7.7e-102   1.1e-98      41     337 ..      24     355 ..       3     378 .. 0.86

  Alignments for each domain:
  == domain 1    score: 328.4 bits;  conditional E-value: 7.7e-102
    TIGR00019  41 keysqleeivkkyeeykklqedlkeakelle...k.....edkelrelakeeleelekkieeleeqlkvlLlPkDpnd.eknvileiragtGGdeaalfagdLfrmYsryaeskkWkveilsaseselgGykevileikG.........................egvysklkfesGvhRvqRvPvtesqGRvhtsaatvavlPeveeve...vkinpkdlridtyrssGaGGqhvnttdsavrithlPtgivvecqdersqlknkekalkvLraklleaeeekqqeeqakeRksqvgsgdRseriRtYnfpqnRvtdhRinltlykLdevleg 337
                  ke+++l++ v+ +e+ +kl+ + k+  elle   +     +d+++ ++   elee+++++++le+++++ +lPkD+nd + + i+eiragtGGdea+lfa++L ++Y++ a++ kW+ +i+s+++++lgG+ke++l+i+G                          g y+ +k+esGvhRvqRvPv +   R+htsa+++avlP  ++       +  ++lridt+rssGaGGqhvntt+savrith+Ptgi+ ++qdersq+knk+kalk+++a++ ++e+e++q+++ + R  ++g gdRseriRtYn+pq+RvtdhR + t + + ++l++
  MMETSP1061-20121228|31044_1  24 KEMASLSHAVALHEKKHKLETEEKSIYELLEeldNddgvdDDDDMTKECMAELEEIQSSQKKLEKKIRIAILPKDENDyQSDAIVEIRAGTGGDEATLFASELRQAYEKTAKAMKWECDIMSENTTDLGGIKEAVLSISGrssaggaamhfdieeddedenimanLGPYGLFKYESGVHRVQRVPVND--TRIHTSACSIAVLPLKQDDGksgELLPMSELRIDTMRSSGAGGQHVNTTNSAVRITHIPTGITASIQDERSQHKNKAKALKLIAARVRDKEREEEQRQHGEARSTLLGGGDRSERIRTYNYPQDRVTDHRCKHTTHGIAKLLDA 355
                  55555555555555444444444444444431111111113789999999***************************95679*****************************************************************************999988899******************86..6*************776654242345669*********************************************************************************************************9999998875 PP

>> TIGR00020  prfB: peptide chain release factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.4   2.1     4e-16   5.4e-13      63     188 ..      30     167 ..      11     173 .. 0.72
   2 !  136.6   0.1   1.6e-43   2.2e-40     188     352 ..     192     357 ..     184     365 .. 0.86

  Alignments for each domain:
  == domain 1    score: 46.4 bits;  conditional E-value: 4e-16
    TIGR00020  63 kekldkleelkksledlsellelakeekde.......ellaeleeelkalekelkele....lktllsgeyd.aknalltiqaGaGGteaqdWasmLlrmylrwaerrgykveildlseaeeaGiksvtllikgeyay 188
                   + +   e+ +k   + ++++el++e +++       ++++e  +el++++++ k+le    + +l ++e+d +++a+++i+aG+GG ea+ +as L + y + a   +++ +i+ +++++ +Gik + l i+g  + 
  MMETSP1061-20121228|31044_1  30 SHAVALHEKKHKLETEEKSIYELLEELDNDdgvddddDMTKECMAELEEIQSSQKKLEkkirIAILPKDENDyQSDAIVEIRAGTGGDEATLFASELRQAYEKTAKAMKWECDIMSENTTDLGGIKEAVLSISGRSSA 167
                  4444444443333344444444444422222333334777788888888877776665221155666899995579*********************************************************98655 PP

  == domain 2    score: 136.6 bits;  conditional E-value: 1.6e-43
    TIGR00020 188 yGyLksekGvhrLvrisPfdanarrhtsfasvevlPevddd.idie.ikeedvridvyrasGaGGqhvnktdsavrithiptgivvqcqnersqlknkekalkllkakLyelelekeeaekkaledekkeig.WGsqirsyvlhpyklvkdlrtevevgnveavld.Gd 352
                  yG++k e+Gvhr+ r+    +++r hts +s+ vlP  +dd    e +   ++rid+ r+sGaGGqhvn+t+savrithiptgi+ + q+ersq+knk+kalkl+ a++ ++e+e+e+ ++ + + +  + g   ++ir+y + + ++v d+r +  +  +  +ld G+
  MMETSP1061-20121228|31044_1 192 YGLFKYESGVHRVQRVPV--NDTRIHTSACSIAVLPLKQDDgKSGElLPMSELRIDTMRSSGAGGQHVNTTNSAVRITHIPTGITASIQDERSQHKNKAKALKLIAARVRDKEREEEQRQHGEARSTLLGGGdRSERIRTYNYPQ-DRVTDHRCKHTTHGIAKLLDaGS 357
                  9***********999855..45799***********8887745556256789************************************************************9999999988877765444415679****9855.9*********9999999998444 PP

>> TIGR03072  release_prfH: putative peptide chain release factor H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.3   0.0     0.002       2.7       4      63 ..     109     167 ..     106     173 .. 0.85
   2 !   90.4   0.4   1.7e-29   2.3e-26     106     181 ..     240     315 ..     231     333 .. 0.92

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.002
    TIGR03072   4 qlssaqGPaecclavakalerlkreaakrkvkvevlekeagekartlrsvlvsLeGeaae 63 
                   + +++G +e++l+  +  ++ ++ a++ k +++++ +++++  + ++ +++s++G +++
  MMETSP1061-20121228|31044_1 109 EIRAGTGGDEATLFASELRQAYEKTAKAMKWECDIMSENTTD-LGGIKEAVLSISGRSSA 167
                  6889*******************************9877665.56788889999998765 PP

  == domain 2    score: 90.4 bits;  conditional E-value: 1.7e-29
    TIGR03072 106 deirfetlrasGpGGqhvnktesavRavhlasGisvkvqseRsqhankrLaklllavkLekleeeqaaalraerrs 181
                  +e+r++t+r+sG GGqhvn+t+savR++h+++Gi+  +q+eRsqh+nk  a +l+a +++++e+e+ ++++ e rs
  MMETSP1061-20121228|31044_1 240 SELRIDTMRSSGAGGQHVNTTNSAVRITHIPTGITASIQDERSQHKNKAKALKLIAARVRDKEREEEQRQHGEARS 315
                  79**************************************************************999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       214  (0.0521697); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2043.19
//
Query:       MMETSP1061-20121228|31039_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 2705.78
//
Query:       MMETSP1061-20121228|31045_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-10   38.7   2.1    9.8e-08   29.5   0.1    2.3  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    2.6e-08   31.0   0.2      4e-06   23.8   0.0    2.1  2  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    4.9e-07   26.6   0.1    1.1e-06   25.5   0.0    1.5  2  TIGR01813 flavo_cyto_c: flavocytochrome c
    8.8e-07   25.8   0.1    1.7e-06   24.8   0.1    1.4  1  TIGR02734 crtI_fam: phytoene desaturase
    1.4e-06   24.9   0.0    2.4e-06   24.1   0.0    1.3  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
      4e-06   23.6   0.4     0.0002   18.1   0.0    2.2  2  TIGR02731 phytoene_desat: phytoene desaturase
    7.1e-06   22.8   0.1     0.0013   15.3   0.1    2.1  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    5.5e-05   20.2   0.5    9.8e-05   19.4   0.3    1.4  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    8.9e-05   18.2   0.1    0.00013   17.7   0.0    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
    0.00018   18.4   0.1    0.00028   17.8   0.1    1.2  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
    0.00029   17.4   0.0    0.00042   16.8   0.0    1.3  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    0.00048   16.9   1.1     0.0032   14.1   0.3    2.1  2  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00059   15.2   0.0    0.00086   14.6   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00088   15.8   0.1     0.0016   15.0   0.1    1.4  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
     0.0013   15.7   0.3     0.0026   14.7   0.2    1.5  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
     0.0018   15.0   0.1     0.0027   14.4   0.1    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.002   15.1   0.1      0.004   14.1   0.1    1.5  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
     0.0027   15.3   0.1     0.0064   14.0   0.1    1.5  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0046   13.6   0.0        0.1    9.2   0.0    2.4  3  TIGR02730 carot_isom: carotene isomerase
     0.0048   13.6   0.0     0.0082   12.8   0.0    1.3  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
     0.0054   13.4   0.0     0.0085   12.7   0.0    1.2  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
     0.0068   13.0   0.0      0.011   12.3   0.0    1.2  1  TIGR00551 nadB: L-aspartate oxidase
     0.0079   12.5   0.0      0.011   12.1   0.0    1.1  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
  ------ inclusion threshold ------
       0.01   12.6   0.0      0.018   11.9   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
      0.025   11.6   0.1      0.049   10.6   0.0    1.4  1  TIGR00507 aroE: shikimate 5-dehydrogenase
      0.025   11.6   0.1      0.046   10.7   0.1    1.3  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
      0.028   11.5   0.0      0.054   10.6   0.0    1.4  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
      0.037   10.6   0.2      0.066    9.8   0.2    1.3  1  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ
      0.037   10.3   0.1       0.06    9.6   0.1    1.2  1  TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
      0.039   10.8   0.1      0.067   10.0   0.1    1.3  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase
      0.053   10.2   0.4      0.084    9.5   0.3    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.1   7.4e-10   9.8e-08       2      45 ..      20      64 ..      19      83 .. 0.82
   2 !    8.7   0.2    0.0016      0.21     397     425 ..     473     501 ..     460     506 .. 0.86

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 7.4e-10
    TIGR03467  2 vvvGgGlAGLaAAveLaraG.vrvtllEarrqlGGRarsfedgsl 45
                 +++G+G+AGL+AA+ L ++G  +v l+E + +lGGR + +   + 
  MMETSP1061-20121228|31045_1 20 LIIGAGIAGLSAALDLLEQGhENVILIEPKANLGGRLATISPTHN 64
                 7******************944699***********887765544 PP

  == domain 2    score: 8.7 bits;  conditional E-value: 0.0016
    TIGR03467 397 pnlfLAGDwtatgyPATlEgAvrSGvqAA 425
                   +lf AG+ t+ g+PA   gA+ SG++ A
  MMETSP1061-20121228|31045_1 473 GRLFFAGEATSLGLPALATGAMESGKRVA 501
                  48***********************9977 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0     3e-08     4e-06       1      59 [.      18      81 ..      18     114 .. 0.77
   2 ?    5.3   0.0     0.012       1.6     223     269 ..     215     264 ..     202     282 .. 0.75

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 3e-08
    TIGR02732  1 kvaivgaglaglatavelvdaghe.velyesrsflggkvgswvd.kdg...nhiemglhvffgc 59
                 ++ i+gag+agl++a++l+++ghe v l e ++ lgg++ +    ++g   + i +g h +fg+
  MMETSP1061-20121228|31045_1 18 RILIIGAGIAGLSAALDLLEQGHEnVILIEPKANLGGRLATISPtHNGttfEGITLGAHWIFGT 81
                 688********************857789*********98775413441113466777777765 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.012
    TIGR02732 223 kpileylea....kgtklylrhkvkeikfekssdgetrvteliiskaeekk 269
                   pi +yle+    kg+ ++ +++vk++ ++++ ++++rv  + ++++ ek+
  MMETSP1061-20121228|31045_1 215 TPIIDYLEQqivsKGGEIFKERRVKKVLHRTK-EDDARVFTVGVDSGVEKR 264
                  58888877533338**************9877.667779999999888765 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   8.2e-09   1.1e-06       2      39 ..      19      56 ..      18      68 .. 0.90
   2 ?   -3.7   0.0         6   7.9e+02     368     396 ..     342     369 ..     331     372 .. 0.71

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 8.2e-09
    TIGR01813  2 vvvvGsGlAGlsaaleakkaglaevvvleKapviGGNs 39
                 ++++G+G+AGlsaal++ ++g ++v+++e ++ +GG  
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEQGHENVILIEPKANLGGRL 56
                 89****************************99999965 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 6
    TIGR01813 368 dlslkspyyvikvtPkvHytmGGvkintk 396
                  +l+  + +y  + + +v + mGG ++++k
  MMETSP1061-20121228|31045_1 342 NLT-YTEIYFDQEKASVQFFMGGRAVEEK 369
                  454.4566777778899999999999887 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.1   1.3e-08   1.7e-06       2      41 ..      20      60 ..      19      72 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.3e-08
    TIGR02734  2 vViGaGlgGLAlAirLaaaGie.vtvlekrdkpGGRagvle 41
                 ++iGaG++GL++A+ L  +G+e v ++e ++++GGR  +++
  MMETSP1061-20121228|31045_1 20 LIIGAGIAGLSAALDLLEQGHEnVILIEPKANLGGRLATIS 60
                 79******************9648899*********87764 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.8e-08   2.4e-06     374     425 ..      11      63 ..       3      73 .. 0.84

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.8e-08
    TIGR03997 374 kkarrrkkvlvvGgGPaGleaaataarrGhr.vtllereeelGGqvklaaklp 425
                    ++ + ++l++G+G aGl+aa    ++Gh+ v+l+e +++lGG++++++   
  MMETSP1061-20121228|31045_1  11 VASSSNDRILIIGAGIAGLSAALDLLEQGHEnVILIEPKANLGGRLATISPTH 63 
                  55666789**********************659*************9998665 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.5e-06    0.0002       1      58 [.      18      80 ..      18      97 .. 0.79
   2 ?    3.7   0.0     0.035       4.6     218     278 ..     216     280 ..     211     285 .. 0.69

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.5e-06
    TIGR02731  1 rvaiagaglaglsaakyladaghtp.ivleardvlggkvaawk.dedgdwyet...glhiffg 58
                 r+ i gag+aglsaa  l + gh   i++e +  lgg++a+    ++g  +e    g h +fg
  MMETSP1061-20121228|31045_1 18 RILIIGAGIAGLSAALDLLEQGHENvILIEPKANLGGRLATISpTHNGTTFEGitlGAHWIFG 80
                 6889*******************87256799********987623456655522236666666 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.035
    TIGR02731 218 pivdyit....srggevrlnarlkeivlne.dgsvkafaladlegkesfevtadayvsalavdilk 278
                  pi+dy++    s+gge+  + r+k++  +  +   + f++   +   +++ + d  +s++++ +lk
  MMETSP1061-20121228|31045_1 216 PIIDYLEqqivSKGGEIFKERRVKKVLHRTkEDDARVFTVGVDS-GVEKRFDVDRVISTVSLGVLK 280
                  7888854222289************9765413445666665444.445566778888888888777 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.1   9.7e-06    0.0013       3      43 ..      18      59 ..      16      83 .. 0.84
   2 ?    5.4   0.0      0.01       1.3     236     299 ..     219     283 ..     212     306 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 9.7e-06
    TIGR02733  3 svvviGaGiaGltaaallakrGl.evtlleaaaqvGGCastf 43
                 ++++iGaGiaGl aa  l ++G  +v l+e +a +GG  +t 
  MMETSP1061-20121228|31045_1 18 RILIIGAGIAGLSAALDLLEQGHeNVILIEPKANLGGRLATI 59
                 799***********9888888873799**********87775 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.01
    TIGR02733 236 drlvealkkdggelllgqrveaietkeeka.eakvvvdsrkkekeevkaddvvanlpaqsllell 299
                  d l++ +  +gge++ ++rv+++ +++++  + + +v   +  ++++  d v+ +++   l +  
  MMETSP1061-20121228|31045_1 219 DYLEQQIVSKGGEIFKERRVKKVLHRTKEDdARVFTVGVDSGVEKRFDVDRVISTVSLGVLKQTT 283
                  8999*****************98665544404444556668899999999999999887777665 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.3   7.4e-07   9.8e-05       2      35 ..      19      53 ..      18      58 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 7.4e-07
    TIGR03197  2 vavIGaGiAgaalalsLarrGv.qvtllekdekla 35
                 +++IGaGiAg+++al L ++G+ +v l+e +++l+
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEQGHeNVILIEPKANLG 53
                 89*******************94599999988776 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0   9.7e-07   0.00013     171     214 ..      19      63 ..      13      98 .. 0.86

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 9.7e-07
    TIGR01372 171 vLvvGaGpaGLaaAraAaraGa.rvilvdeqaeaGGsllseaeti 214
                  +L++GaG aGL+aA+   ++G  +vil++ +a+ GG+l + + t 
  MMETSP1061-20121228|31045_1  19 ILIIGAGIAGLSAALDLLEQGHeNVILIEPKANLGGRLATISPTH 63 
                  8********************736*************98765444 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.1   2.1e-06   0.00028       3      31 ..      19      47 ..      17      66 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.1e-06
    TIGR03378  3 viiiGgGlaGlscalrlaeaGkktaiiaa 31
                 ++iiG+G+aGls+al l+e+G+  +i+ +
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEQGHENVILIE 47
                 579*******************9999765 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   3.2e-06   0.00042       4      47 ..      18      60 ..      15     101 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 3.2e-06
    TIGR00562  4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiyTrk 47
                  + ++G+Gi+GL++a  l  +    +++l+E k   GG++ T  
  MMETSP1061-20121228|31045_1 18 RILIIGAGIAGLSAALDLLEQ-GHENVILIEPKANLGGRLATIS 60
                 689************999876.6889*************99864 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.3   2.4e-05    0.0032       1      37 [.      19      56 ..      19      60 .. 0.88
   2 ?    1.0   0.0      0.24        32     107     138 ..     216     248 ..     201     277 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.4e-05
    TIGR00275  1 viiiGgGaaGlmaAitaae.egakVlllEknkkigkKl 37
                 ++iiG+G aGl aA+ + e  +++V+l+E + ++g  l
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEqGHENVILIEPKANLGGRL 56
                 68**************99956789******99999776 PP

  == domain 2    score: 1.0 bits;  conditional E-value: 0.24
    TIGR00275 107 svldaLlkelkelgvevlteskvksi.kkeeek 138
                   ++d L++++ + g e++ e +vk++ ++++e 
  MMETSP1061-20121228|31045_1 216 PIIDYLEQQIVSKGGEIFKERRVKKVlHRTKED 248
                  699**********************98655443 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   6.5e-06   0.00086     534     582 ..      13      62 ..       5      67 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 6.5e-06
    TIGR03315 534 ksekhkvaviGaGPaGlsagyflaraGlp.vtvfekkekagGvvkniiPe 582
                  +s+++++ +iGaG aGlsa++ l  +G++ v ++e k++ gG + +i P 
  MMETSP1061-20121228|31045_1  13 SSSNDRILIIGAGIAGLSAALDLLEQGHEnVILIEPKANLGGRLATISPT 62 
                  567779***************9999998538899********99999885 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   1.2e-05    0.0016       2      48 ..      18      64 ..      17      78 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.2e-05
    TIGR03219  2 rvaiiGGGiaGvalalelsksshlnvklfeaapafgevGaGvsfGan 48
                 r+ iiG GiaG++ al+l  + h nv l e   ++g   a +s   n
  MMETSP1061-20121228|31045_1 18 RILIIGAGIAGLSAALDLLEQGHENVILIEPKANLGGRLATISPTHN 64
                 688***************************98888877777776555 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.2     2e-05    0.0026       1      30 [.      19      49 ..      19      60 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2e-05
    TIGR02352  1 vlviGgGviGlsvAveLakrghk.vtllekd 30
                 +l+iG+G+ Gls A+ L+++gh+ v l+e++
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEQGHEnVILIEPK 49
                 69*******************9537777766 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.1   2.1e-05    0.0027       2      34 ..      19      51 ..      18      68 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.1e-05
    TIGR01988  2 ivIvGgGlvGlalAlaLassadlkvalveakaa 34
                 i+I+G+G++Gl+ Al L ++++ +v l+e+ka 
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEQGHENVILIEPKAN 51
                 89***************************9865 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1     3e-05     0.004       2      34 ..      18      51 ..      17      60 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3e-05
    TIGR03364  2 dvvvvGaGivGlahAlaaarrGlk.Vtvierssr 34
                 +++++GaGi Gl+ Al   ++G++ V++ie +++
  MMETSP1061-20121228|31045_1 18 RILIIGAGIAGLSAALDLLEQGHEnVILIEPKAN 51
                 589*******************964888887665 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   4.9e-05    0.0064       3      32 ..      19      49 ..      18      56 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 4.9e-05
    TIGR02032  3 vvvvGaGpaGssaAlrlakkGlr.Vlllekk 32
                 ++++GaG+aG saAl+l ++G++ V+l+e k
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEQGHEnVILIEPK 49
                 68*******************9548888866 PP

>> TIGR02730  carot_isom: carotene isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00079       0.1       4      95 ..      20     115 ..      17     144 .. 0.69
   2 ?   -2.2   0.0       2.3     3e+02     229     280 ..     215     272 ..     201     276 .. 0.69
   3 ?    1.4   0.0      0.18        24     415     491 ..     430     503 ..     424     505 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00079
    TIGR02730   4 ivigsgigglvtatqlaakgak.vlvlekylipggsagyf..eregykfd...vgaslifgfgdkgttnlltralaavgekletipdpvqihyhlpnd 95 
                  ++ig+gi gl +a +l  +g   v+++e     gg         +g +f+   +ga  ifg  d+  +      l a+++++  ipd   ++ h+ +d
  MMETSP1061-20121228|31045_1  20 LIIGAGIAGLSAALDLLEQGHEnVILIEPKANLGGRLATIspTHNGTTFEgitLGAHWIFGTEDREDLAE-KSVLHALAKNV-GIPDSDYMQSHIYTD 115
                  79******************8625666877777776555422578999965558********99986543.33455555555.467777777666555 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 2.3
    TIGR02730 229 geiaeklvkglekaggkirykarvtkiilendk......avgvkladgekirakrivs 280
                    i + l + + ++gg+i  + rv k++   ++      +vgv+    +++   r++s
  MMETSP1061-20121228|31045_1 215 TPIIDYLEQQIVSKGGEIFKERRVKKVLHRTKEddarvfTVGVDSGVEKRFDVDRVIS 272
                  556777888888999***9999999999643221112224677776667777777777 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.18
    TIGR02730 415 ldykevgtprshrrflgredgtygpiprrklkgllsmpfnrtaidg.lycvgdstfpgqglnavafsgfacahrvavd 491
                  ++   vg p sh  f g+++g +    r +l   l+ p++  a  g l+  g++t    gl a+a   +   +rva++
  MMETSP1061-20121228|31045_1 430 IENGVVGLPDSHAAFDGKREGVFEGYSRDRLA--LAKPIESGAWAGrLFFAGEATS--LGLPALATGAMESGKRVAIE 503
                  666679******************99999885..8889999887654888999874..67888888888888888876 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   6.2e-05    0.0082     129     170 ..      12      54 ..       3      62 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 6.2e-05
    TIGR01316 129 apstkkkvaviGaGpaGlavaselakkGhe.vtvfealhkpGG 170
                  a s++ ++ +iGaG aGl+ a +l  +Ghe v + e     GG
  MMETSP1061-20121228|31045_1  12 ASSSNDRILIIGAGIAGLSAALDLLEQGHEnVILIEPKANLGG 54 
                  678999***********************83444565555555 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   6.4e-05    0.0085       3      46 ..      19      64 ..      17      89 .. 0.78

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.4e-05
    TIGR01292  3 viiiGaGpaGltaaiYaaranlktll.ie.gkeaggqltttteven 46
                 ++iiGaG aGl+aa+    ++ + ++ ie +++ gg+l+t +   n
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEQGHENVIlIEpKANLGGRLATISPTHN 64
                 79*************9988887755505534566799998876666 PP

>> TIGR00551  nadB: L-aspartate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   8.1e-05     0.011       4      33 ..      18      49 ..      15      56 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.1e-05
    TIGR00551  4 dvvviGsGaagLsaalalaekyr..vvvlska 33
                 ++++iG+G+agLsaal l e+++  v+++ ++
  MMETSP1061-20121228|31045_1 18 RILIIGAGIAGLSAALDLLEQGHenVILIEPK 49
                 799*************9988766568888765 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   8.4e-05     0.011     371     416 ..      15      61 ..       6      86 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 8.4e-05
    TIGR03996 371 tpgdvlvvGGGpaGleaarvlavrGh.rvtlaeasarlGGmvriaar 416
                      +l++G G aGl aa  l  +Gh +v l+e  a+lGG + +++ 
  MMETSP1061-20121228|31045_1  15 SNDRILIIGAGIAGLSAALDLLEQGHeNVILIEPKANLGGRLATISP 61 
                  45679**************9999**94599**********9987753 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   0.00013     0.018       4      42 ..      19      58 ..      17      88 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 0.00013
    TIGR00031  4 yiivGaGlsGivlae.ilaklnkrvlvvekrnhiGGncyd 42
                 ++i+GaG++G   a   l++  ++v+++e + ++GG   +
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALdLLEQGHENVILIEPKANLGGRLAT 58
                 79********999975999999**************7654 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00037     0.049     114     145 ..      13      45 ..       5      67 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00037
    TIGR00507 114 lksekrvliiGAGGaakavaleLlka.dkevii 145
                    s+ r+liiGAG a+ ++al Ll++ +++vi+
  MMETSP1061-20121228|31045_1  13 SSSNDRILIIGAGIAGLSAALDLLEQgHENVIL 45 
                  56799********************94445554 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   0.00035     0.046     152     191 ..      12      51 ..       8      60 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00035
    TIGR03366 152 gdlegrrvlvlGaGmLGLtaaaaaeerGasrviavDpsae 191
                  ++ ++ r+l++GaG+ GL+aa  + e+G  +vi ++p+a+
  MMETSP1061-20121228|31045_1  12 ASSSNDRILIIGAGIAGLSAALDLLEQGHENVILIEPKAN 51 
                  5567899****************************99875 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0    0.0004     0.054      24      58 ..      19      54 ..       9      69 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.0004
    TIGR00292 24 viivGaGpsGLtaayylakeg.lkvvvlerklaiGG 58
                 ++i+GaG +GL+aa  l ++g   v+++e k  +GG
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEQGhENVILIEPKANLGG 54
                 789****************996789999**999999 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   0.2    0.0005     0.066       4      40 ..      19      54 ..      16      59 .. 0.81

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0005
    TIGR02485  4 vlviGgGlaglCaaiearraGas.vllleaaPrdlrGG 40
                 +l+iG+G+agl aa+   + G   v l+e  P++ +GG
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEQGHEnVILIE--PKANLGG 54
                 79**************9998875155555..8888888 PP

>> TIGR01812  sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   0.00046      0.06       2      28 ..      19      46 ..      18      51 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00046
    TIGR01812  2 vvivGaGlAGlraAveaakkg.lkvavi 28
                 ++i+GaG+AGl aA+++ ++g  +v++i
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEQGhENVILI 46
                 68***************99995566665 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.1   0.00051     0.067       2      32 ..      18      49 ..      17      55 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00051
    TIGR02023  2 dvlviGggpsGaaaaetLakagie.villere 32
                 ++l+iG+g +G +aa  L ++g+e vil+e +
  MMETSP1061-20121228|31045_1 18 RILIIGAGIAGLSAALDLLEQGHEnVILIEPK 49
                 789************99888887637888865 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.3   0.00063     0.084       2      32 ..      19      49 ..      18      54 .. 0.93

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00063
    TIGR01984  2 viivGgglvGlslAlaLsrksklkialieak 32
                 ++i+G+g++Gls Al L ++++ ++ lie k
  MMETSP1061-20121228|31045_1 19 ILIIGAGIAGLSAALDLLEQGHENVILIEPK 49
                 89*******************999*999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        65  (0.0158459); expected 4.1 (0.001)
Passed Fwd filter:                        31  (0.00755729); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              31  [number of targets reported over threshold]
# CPU time: 0.45u 0.16s 00:00:00.61 Elapsed: 00:00:00.43
# Mc/sec: 1571.59
//
Query:       MMETSP1061-20121228|31048_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 2009.83
//
Query:       MMETSP1061-20121228|31053_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|31063_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.1   0.1      0.027   12.0   0.0    1.5  2  TIGR00071 hisT_truA: tRNA pseudouridine synthase A


Domain annotation for each model (and alignments):
>> TIGR00071  hisT_truA: tRNA pseudouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.16   6.6e+02     125     145 ..      41      61 ..      30      77 .. 0.54
   2 ?   12.0   0.0   6.6e-06     0.027       1      37 [.     117     156 ..     117     158 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.16
    TIGR00071 125 lekleaaakellGkhdFsnFt 145
                   ++++ a+ e+  k++ ++F+
  MMETSP1061-20121228|31063_1  41 EHTMRSAVDEIRRKQQTEQFS 61 
                  334444444444444444444 PP

  == domain 2    score: 12.0 bits;  conditional E-value: 6.6e-06
    TIGR00071   1 rkialkiaYdGsnyhGmqv...qpekktvegelekaLeev 37 
                  r+ial++ YdG+ y G+++   q++ ++ve  +++aL ++
  MMETSP1061-20121228|31063_1 117 RHIALRFFYDGATYSGLAQnigQENDNSVERYIFEALLKA 156
                  679**************9855568999*********9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1005.63
//
Query:       MMETSP1061-20121228|31060_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-09   34.9   0.0    2.6e-09   34.4   0.0    1.2  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00016   19.3   0.0    0.00031   18.4   0.0    1.5  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
     0.0064   13.6   0.1      0.017   12.2   0.0    1.7  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
  ------ inclusion threshold ------
      0.015   12.7   0.0      0.022   12.1   0.0    1.3  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
      0.029   11.6   0.3      0.094    9.9   0.0    1.8  2  TIGR02415 23BDH: acetoin reductases


Domain annotation for each model (and alignments):
>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   3.2e-12   2.6e-09     145     265 ..     172     299 ..     149     301 .. 0.79

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 3.2e-12
    TIGR02685 145 raelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslq......irvngvapG....lsllpdampee.vkeeyrrkvplgqreasaeqiadvviflvskkakyitGtiikvdGGlslv 265
                  +    + + si  l    +d+ ++g+     ak +le   r  alel  ++      +rvn+v  G    ls      ++e ++ +  r+ plg  + sa q+a  v + v+ +a+ +tG +i vdGG+s++
  MMETSP1061-20121228|31060_1 172 ND-NLTMSSSITTLSYLGADRAIPGYHTMGPAKASLESTVRGLALELGRHRsscgplVRVNAVRAGpiptLSSKGGIAGFErMRSDVDRRAPLG--NVSASQVAATV-YHVAAEADGMTGQTIEVDGGYSVT 299
                  33.3445678999999999****************************86544444559*****755421155555445554268899999***9..678999*9765.78999****************987 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   3.8e-07   0.00031     150     237 ..     201     295 ..     177     297 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 3.8e-07
    TIGR01830 150 asKaGligltkslakElasrn......itvnavaPGfietdmte...klsekvkkkileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGG 237
                   +Ka l +  + la El+++       ++vnav  G i t   +   +  e++++++ ++ pl+ ++ +++vaa+v ++a  ea+ +tGq+++vdGG
  MMETSP1061-20121228|31060_1 201 PAKASLESTVRGLALELGRHRsscgplVRVNAVRAGPIPTLSSKggiAGFERMRSDVDRRAPLGNVS-ASQVAATVYHVAA-EADGMTGQTIEVDGG 295
                  57888888899999999876444556699*******99886665221446999***********997.578**99999998.7889**********9 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.57   4.7e+02       2      46 ..      12      59 ..      11      66 .. 0.61
   2 !   12.2   0.0     2e-05     0.017     221     254 ..     266     298 ..     230     299 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.57
    TIGR01963  2 kvalvtGaas..GiglaiakelaaaGa.kvvvndleeeaaeaaakele 46
                 kval+ G a    i + + +++ + G  +v+++  +e ++++++k +e
  MMETSP1061-20121228|31060_1 12 KVALIMGVANqrSIAMSCMDAFLQRGDwDVILTVRDERTRTKVQKLVE 59
                 788888876523688888888888886244444444555555555554 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 2e-05
    TIGR01963 221 vtveevaelalflasdaaaqitGqalsldgGwta 254
                  v+  +va+++ + ++ +a ++tGq++++dgG+ +
  MMETSP1061-20121228|31060_1 266 VSASQVAATV-YHVAAEADGMTGQTIEVDGGYSV 298
                  5677888876.6677789**************75 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   2.7e-05     0.022     158     245 ..     208     296 ..     174     299 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 2.7e-05
    TIGR01832 158 savaGltkllanewakkg..invnaiaPGyletnntealradekrn.aaileriPagrwGepedlagaavflassasdyvnGailavdGGw 245
                  s+v Gl+  l    ++ g  ++vna+  G + t  ++   a  +r   ++  r P g+   +  +a a+v+  ++ +d ++G+++ vdGG+
  MMETSP1061-20121228|31060_1 208 STVRGLALELGRHRSSCGplVRVNAVRAGPIPTLSSKGGIAGFERMrSDVDRRAPLGNVSAS-QVA-ATVYHVAAEADGMTGQTIEVDGGY 296
                  4455555555555454445589***********99998777766651577788999997655.455.566767777899***********8 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.29   2.3e+02      47      82 ..       8      43 ..       4      61 .. 0.79
   2 ?    9.9   0.0   0.00011     0.094     219     251 ..     266     296 ..     241     298 .. 0.79

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.29
    TIGR02415 47 kgtkavavkldvsdkseveeaveqaveklGeldvlv 82
                 +gt+ va+ + v+++ ++     +a  + G++dv++
  MMETSP1061-20121228|31060_1  8 TGTRKVALIMGVANQRSIAMSCMDAFLQRGDWDVIL 43
                 577888888888888888888888888888888875 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00011
    TIGR02415 219 esePedvaelvsflasedsdyitGqsilvdGGl 251
                  +s  + va+ v ++a+ ++d +tGq+i vdGG 
  MMETSP1061-20121228|31060_1 266 VS-ASQVAATVYHVAA-EADGMTGQTIEVDGGY 296
                  43.4679999988886.5899**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1704.86
//
Query:       MMETSP1061-20121228|31073_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 293.98
//
Query:       MMETSP1061-20121228|31088_1  [L=388]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (388 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 2226.60
//
Query:       MMETSP1061-20121228|31100_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.34
# Mc/sec: 341.62
//
Query:       MMETSP1061-20121228|31120_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 401.25
//
Query:       MMETSP1061-20121228|31133_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 538.52
//
Query:       MMETSP1061-20121228|31147_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-10   36.7   0.0    2.7e-09   34.3   0.0    2.1  2  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
      1e-08   32.4   0.0    3.8e-08   30.6   0.0    1.9  2  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    7.9e-08   28.7   1.5    2.8e-07   26.8   0.0    2.0  2  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
    2.5e-05   20.8   0.2     0.0051   13.2   0.0    2.1  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
     0.0089   12.3   0.0      0.015   11.5   0.0    1.3  1  TIGR01052 top6b: DNA topoisomerase VI, B subunit


Domain annotation for each model (and alignments):
>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.1      0.15   1.2e+02     115     145 ..     264     294 ..     229     334 .. 0.61
   2 !   34.3   0.0   3.3e-12   2.7e-09     187     329 ..     416     574 ..     411     578 .. 0.75

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.15
    TIGR02966 115 rdFvanvsHELrtPLtvlkGyletleeepee 145
                  r+ +++  H ++ P+  l+ y  +l+ + +e
  MMETSP1061-20121228|31147_1 264 RENLSDSLHQMKNPIQALRTYGKILQRQIAE 294
                  3344445566666666666666666555433 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 3.3e-12
    TIGR02966 187 ekvdvaelleelkkeaealseekehqielev...daavkvkgdeeeLrsalsNLveNAiky..........t.peggeitvrweeeeeg....aelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSelgkGstF 329
                  e v ++ +le + ++++a+++e+ +  e+ +   d    v+ + ++ ++a sN+++NA ky          t +++ +++vr+  ++++      + v+D+G+GI +++   ++ R +R ++  s+e gG G+GL + k  +er  + L+i+ +++  s+F
  MMETSP1061-20121228|31147_1 416 EMVFITDVLEPVFDTFKAIASEEGILFEILIediDDLPGVFVAPKSFQEAASNVLDNAFKYvvlpkpyspfTrNPSPQVRVRIYPSDHSerpgLIVLVEDNGPGITTDDRDLIFQRGFRSNR-TSSEIGGRGIGLGLAKALMERMGGYLSIATDEE-TSQF 574
                  5677788888888888888888876555433214788899999*****************9444444433322356678887754333211338899**********************876.57789***********************87654.4555 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.1      0.55   4.5e+02      37      75 ..     230     267 ..     224     313 .. 0.68
   2 !   30.6   0.0   4.6e-11   3.8e-08     322     452 ..     425     574 ..     414     578 .. 0.71

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.55
    TIGR01386  37 erdreelsakleavrelLreeldlkedlkkkaeklddll 75 
                  +rd+e++s   + ++  Lr + +++++l++++  +++ l
  MMETSP1061-20121228|31147_1 230 KRDKEQVSLAAQSLSMALRMD-NERNILREQNDIFRENL 267
                  566666666667777777666.55556655555555443 PP

  == domain 2    score: 30.6 bits;  conditional E-value: 4.6e-11
    TIGR01386 322 ekvaelfevlaeergvslkvege.....aevegdaqlfrRalsNLlsNAlry.......tp....egstievrve....rradevevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaesadgktrf 452
                  e v++ f+++a e+g+  ++  e       v + ++ f+ a sN+l+NA +y       +p       +++vr+      ++  + v ve++g+gi  + ++ +F R +R ++  s+ + g G+GL + ++++e  gG +++  +++  +f
  MMETSP1061-20121228|31147_1 425 EPVFDTFKAIASEEGILFEILIEdiddlPGVFVAPKSFQEAASNVLDNAFKYvvlpkpySPftrnPSPQVRVRIYpsdhSERPGLIVLVEDNGPGITTDDRDLIFQRGFRSNRTSSEIG-GRGIGLGLAKALMERMGGYLSIATDEETSQF 574
                  5678888889988885544433321122346678999**************9333333211221123456666642111222235699**********************998877654.589999999***********99998887777 PP

>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   1.3     0.079        64      76     155 ..     237     316 ..     222     322 .. 0.71
   2 !   26.8   0.0   3.4e-10   2.8e-07     599     671 ..     493     570 ..     418     584 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 0.079
    TIGR02956  76 qaigkkltlesetledklkaLeel.dfnekllarleslvkdiidtlaqlgelvgekitlqaqlqeksrelkeaaeeieels 155
                    ++++l +  + + ++ + L+e+ d+ +++l+   +++k+ i+ l + g+  +++i   ++    +++l e ae++ ++s
  MMETSP1061-20121228|31147_1 237 SLAAQSLSMA-LRMDNERNILREQnDIFRENLSDSLHQMKNPIQALRTYGKILQRQIAETSTDVGGTSQLLELAERLMVQS 316
                  4444555443.34555555565541566667776667999999***************99999999999999999988776 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 3.4e-10
    TIGR02956 599 svvlrvslndds....llfeVeDtGvGiaeeeqetlFka.ftqaegrkksgGTGLGLAiskrlveamdgelsveSelg 671
                  +v++r+  +d s    l++ VeD G Gi  + ++ +F+  f       ++gG G+GL ++k l+e m+g ls++  ++
  MMETSP1061-20121228|31147_1 493 QVRVRIYPSDHSerpgLIVLVEDNGPGITTDDRDLIFQRgFRSNRTSSEIGGRGIGLGLAKALMERMGGYLSIATDEE 570
                  345555555555889999*******************953888779999***********************987664 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.1    0.0014       1.1     271     312 ..     258     300 ..     227     322 .. 0.79
   2 !   13.2   0.0   6.2e-06    0.0051     425     482 ..     510     569 ..     496     574 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0014
    TIGR02938 271 eklealretlsaaihrlqgPlnlisaaisvlerr.gddagnda 312
                  e+ + +re ls ++h++++P+  + +  ++l+r+  + + ++ 
  MMETSP1061-20121228|31147_1 258 EQNDIFRENLSDSLHQMKNPIQALRTYGKILQRQiAETSTDVG 300
                  566779***************************9655555554 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 6.2e-06
    TIGR02938 425 rveiedsGPGiPadlrlkvfePff.ttkass.rkhvGmGlavaqeivakhaGlidvdddy 482
                   v +ed GPGi +d r  +f+  f + ++ss   ++G+Gl  a+ ++ + +G +++ +d 
  MMETSP1061-20121228|31147_1 510 IVLVEDNGPGITTDDRDLIFQRGFrSNRTSSeIGGRGIGLGLAKALMERMGGYLSIATDE 569
                  4679****************97661556666467899***************99998876 PP

>> TIGR01052  top6b: DNA topoisomerase VI, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   1.8e-05     0.015      51     113 ..     492     556 ..     489     589 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.8e-05
    TIGR01052  51 Pdikveieklgk...dhykvavednGpGiPeeyipkvfgkllagsklhriiqsrGqqGiGisgavl 113
                  P+++v+i   ++   +  +v vednGpGi ++    +f + + + ++   i  rG  G+G++ a++
  MMETSP1061-20121228|31147_1 492 PQVRVRIYPSDHserPGLIVLVEDNGPGITTDDRDLIFQRGFRSNRTSSEIGGRGI-GLGLAKALM 556
                  6666666544433226789***********************************96.999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 2185.15
//
Query:       MMETSP1061-20121228|31192_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 579.60
//
Query:       MMETSP1061-20121228|31218_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 565.67
//
Query:       MMETSP1061-20121228|31216_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2630.68
//
Query:       MMETSP1061-20121228|31233_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|31241_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 929.42
//
Query:       MMETSP1061-20121228|31243_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|31252_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   11.8   0.4      0.017   11.7   0.3    1.0  1  TIGR03017 EpsF: chain length determinant protein EpsF
      0.067    9.5   1.5      0.071    9.4   1.0    1.0  1  TIGR00831 a_cpa1: Na+/H+ antiporter


Domain annotation for each model (and alignments):
>> TIGR03017  EpsF: chain length determinant protein EpsF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.3   8.3e-06     0.017     263     311 ..       8      56 ..       2      65 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.3e-06
    TIGR03017 263 iaraesklaelsqklgknhPqykrakaelaslkskLnaeikkvtssvet 311
                  i+++e+ l +  + + +   + +r+ ae++s++sk+ +++kk+   v++
  MMETSP1061-20121228|31252_1   8 ISTLETELDQARRLVSEKEEEIVRITAEMNSIRSKVGEDLKKARIEVAN 56 
                  8899999*9999999999************************9988876 PP

>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.4   1.0   3.5e-05     0.071     440     491 ..      10      60 ..       2      64 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 3.5e-05
    TIGR00831 440 rlaveedvakellkeleervvelradgeekvesdlaeknlerrvrlavldak 491
                   l +e d a++l  e ee++v + a+  ++++s+++e + + r+  a l+a+
  MMETSP1061-20121228|31252_1  10 TLETELDQARRLVSEKEEEIVRITAEM-NSIRSKVGEDLKKARIEVANLRAE 60 
                  5667788899***********999985.89********96667777767665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|31276_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    8.5   5.0       0.12    8.5   3.5    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   3.5   2.9e-05      0.12     151     287 ..      10     140 ..       3     246 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 2.9e-05
    TIGR00934 151 rtktllereledrtetkvrtr.tqvslprksakrddfqeklfsGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseansla 287
                  ++kt  +   ++ + +k r++ t + l +k+a ++ +++k +  +   +  q     +q+ +d+++d ++ ++  +l +d +++ k +++++s ++++++++ d    ++y+  ++  e++++ ++  ++++e +s++
  MMETSP1061-20121228|31276_1  10 KVKTAHKAVSTKAKAKKPRGGtTTKKLGKKKAATSATKKKTIDAK---KAAQ----KKQRISDTDKDDKSRSKNLPLGSDRPSDGKATNSSTSTNVQQNSNAYDNASWEIYQQHSEKFENDDSWNENYRRLQEFHSTH 140
                  556666666677777888888555777888888888888888733...3332....3333333333333333334588888888888888899999999999999999999999999988888776666655555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1251.62
//
Query:       MMETSP1061-20121228|31307_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-11   41.9   0.0    1.5e-11   41.9   0.0    1.0  1  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B
    8.2e-11   39.5   0.1    8.2e-11   39.5   0.1    1.0  1  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
  ------ inclusion threshold ------
      0.018   12.4   0.0      0.021   12.1   0.0    1.1  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J


Domain annotation for each model (and alignments):
>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.9   0.0   1.1e-14   1.5e-11     228     272 ..       3      47 ..       1      52 [. 0.91

  Alignments for each domain:
  == domain 1    score: 41.9 bits;  conditional E-value: 1.1e-14
    TIGR00563 228 tvqDasaqlvatlLePkneetilDvCaaPGGktthilelakdqaq 272
                   +q++ + lv ++L+P +++ +lD+CaaPGGkt+h++ +++++ +
  MMETSP1061-20121228|31307_1   3 MLQNLPSVLVGHALNPSPGDVVLDMCAAPGGKTSHLASIVNNNNN 47 
                  5799999********************************998765 PP

>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.1     6e-14   8.2e-11      53      96 ..       2      45 ..       1      52 [. 0.94

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 6e-14
    TIGR00446 53 yllqeassmlPvlalepeekervlDlaaaPGgkttqisallkne 96
                 ++lq+  s+l   al+p++ ++vlD++aaPGgkt +++ +++n+
  MMETSP1061-20121228|31307_1  2 MMLQNLPSVLVGHALNPSPGDVVLDMCAAPGGKTSHLASIVNNN 45
                 5899999**********************************997 PP

>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.5e-05     0.021      32      56 ..      20      44 ..      15      47 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.5e-05
    TIGR00438 32 kGklvldlGaaPGGWsqvavekvge 56
                 +G++vld+ aaPGG +   +++v +
  MMETSP1061-20121228|31307_1 20 PGDVVLDMCAAPGGKTSHLASIVNN 44
                 79************98888777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|31315_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.35
# Mc/sec: 516.64
//
Query:       MMETSP1061-20121228|31331_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|31348_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.37
# Mc/sec: 2343.70
//
Query:       MMETSP1061-20121228|31361_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 521.36
//
Query:       MMETSP1061-20121228|31363_1  [L=143]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (143 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 674.09
//
Query:       MMETSP1061-20121228|31382_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   11.7   0.0      0.036   11.7   0.0    1.1  1  TIGR02764 spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB


Domain annotation for each model (and alignments):
>> TIGR02764  spore_ybaN_pdaB: polysaccharide deacetylase family sporulation protein PdaB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.9e-06     0.036     109     136 ..      41      68 ..      19      72 .] 0.89

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.9e-06
    TIGR02764 109 nkevlkvaeelgykvvqwsvdslDwknp 136
                  n+++l +a +++ ++v ws ds  w+++
  MMETSP1061-20121228|31382_1  41 NQSSLVIAASYDNSTVVWSHDSSPWQDQ 68 
                  8999*********************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|31374_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1937.41
//
Query:       MMETSP1061-20121228|31397_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 599.95
//
Query:       MMETSP1061-20121228|31416_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 373.01
//
Query:       MMETSP1061-20121228|31443_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 345.69
//
Query:       MMETSP1061-20121228|31506_1  [L=711]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.6e-13   45.8   0.0    2.6e-12   43.8   0.0    1.9  2  TIGR03105 gln_synth_III: glutamine synthetase, type III
    3.9e-12   43.5   0.0    7.4e-12   42.5   0.0    1.4  1  TIGR00653 GlnA: glutamine synthetase, type I


Domain annotation for each model (and alignments):
>> TIGR03105  gln_synth_III: glutamine synthetase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.8   0.0   1.2e-15   2.6e-12     109     260 ..     212     376 ..     203     407 .. 0.80
   2 ?   -2.1   0.0      0.11   2.2e+02     322     346 ..     475     500 ..     466     507 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.8 bits;  conditional E-value: 1.2e-15
    TIGR03105 109 aekgftlktGveceffllrree.........dgklsvaDkaDklakpcYDq....ralmrrydvleeisealnelGwdlYqiDheDanGqfelnfeyaDalttaDrvaffkylvkeiaeeegllatfmPkPfadrtGnGlhlhlslldedgknlfaddadeeglg 260
                  +++g + ++G+e e+fl+ ree          g++ +  +a + ++ c  +    ++ +     ++ei +   ++G+ l +   e a  qfe+   y    t  D+ +f+  +++e+a ++gl a +  kPf+d  G+G h + s++ + g n  + da +e+ g
  MMETSP1061-20121228|31506_1 212 SSSGVQANIGLEQEIFLIPREEyyrrpdlqlTGRTIMGKNAPRGQEMCDHYmaplSSATAALACMQEIQDECFRMGIPLRTRHREVAPNQFEFAPLYGTNTTQIDQNVFVMQIIEEVAPKHGLAALLQEKPFNDVNGSGKHNNWSIATRSGVNFLDPDAVKEATG 376
                  567999999999999999887633333222235555666666677777555212234566778899**************************************************************************************9988887666665 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 0.11
    TIGR03105 322 iP.dagRlelRlaDgaanpYlvsaav 346
                   P ++ R+e+R   ++ n  lv++++
  MMETSP1061-20121228|31506_1 475 FPyGGARFEFRAVGSSQNVSLVNTVL 500
                  565688************99998865 PP

>> TIGR00653  GlnA: glutamine synthetase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   3.6e-15   7.4e-12     118     281 ..     215     370 ..     209     386 .. 0.78

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 3.6e-15
    TIGR00653 118 gdevyfGpEaEFflfdkvefkeasnssflevdseegewnreveegnkgykikkkggYfdvep.vDkakdirrelvlaleelglevevsHHEvataqaEidikfdklvkaaDeivlyKyvvknvakkhGktatFmpKplfgdngsGmHvhlslwkdgenlfageeg 281
                  g ++++G E+E fl+ + e  ++  +  l+  ++         ++n     + ++ Y+++ +    a  + +e+  +  ++g+ + + H Eva+ q E +  + + +++ D+ v + +++  va khG+ a    Kp+   ngsG H + s+       f ++++
  MMETSP1061-20121228|31506_1 215 GVQANIGLEQEIFLIPREEYYRR-PDLQLTGRTIM--------GKNAPRGQEMCDHYMAPLSsATAALACMQEIQDECFRMGIPLRTRHREVAPNQFEFAPLYGTNTTQIDQNVFVMQIIEEVAPKHGLAALLQEKPFNDVNGSGKHNNWSIATRSGVNFLDPDA 370
                  66778888888888887777755.33333333333........333333345566677654404556789999999999*************************************************************************9855555666664 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (711 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.44
# Mc/sec: 2132.82
//
Query:       MMETSP1061-20121228|31526_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|31527_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|31524_1  [L=765]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (765 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 3155.36
//
Query:       MMETSP1061-20121228|31540_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1478.28
//
Query:       MMETSP1061-20121228|31545_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 574.15
//
Query:       MMETSP1061-20121228|31555_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.3  11.3       0.05   11.2   7.8    1.7  1  TIGR04126 PGF_CTERM: PGF-CTERM archaeal protein-sorting signal


Domain annotation for each model (and alignments):
>> TIGR04126  PGF_CTERM: PGF-CTERM archaeal protein-sorting signal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   7.8   1.2e-05      0.05       8      27 ..      23      42 ..      23      42 .. 0.98

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.2e-05
    TIGR04126  8 FGvvvALvALLaAalLarRR 27
                 FGv+vA++A + Aa   rRR
  MMETSP1061-20121228|31555_1 23 FGVAVAVAAAVTAAIATRRR 42
                 *******************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 917.64
//
Query:       MMETSP1061-20121228|31576_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 345.69
//
Query:       MMETSP1061-20121228|31567_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 2609.98
//
Query:       MMETSP1061-20121228|31644_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1579.32
//
Query:       MMETSP1061-20121228|31652_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 339.40
//
Query:       MMETSP1061-20121228|31682_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 444.85
//
Query:       MMETSP1061-20121228|31676_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.08s 00:00:00.24 Elapsed: 00:00:00.35
# Mc/sec: 1093.62
//
Query:       MMETSP1061-20121228|31675_1  [L=770]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.35
# Mc/sec: 2903.76
//
Query:       MMETSP1061-20121228|31700_1  [L=462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-103  343.7   0.0   4.6e-103  342.5   0.0    1.5  1  TIGR00321 dhys: deoxyhypusine synthase


Domain annotation for each model (and alignments):
>> TIGR00321  dhys: deoxyhypusine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  342.5   0.0  1.1e-106  4.6e-103      12     300 ..      99     438 ..      91     439 .. 0.94

  Alignments for each domain:
  == domain 1    score: 342.5 bits;  conditional E-value: 1.1e-106
    TIGR00321  12 svaelidkmartgfqgkrigeaakilkemvedee........................itiflglagalvssGlRkiiaylvknklidalvttaanveedliealgpahlgdlevddkkLreeginRigdvfvpndefekfeetlaeileellevq...........................kiitaselieelgkeldddkssiliaaykrkiPifcPaltDssiGlalalykkenk.lkiDvvrDveklndlvlnsektgvivlGGglpkhfilnaellreGadyAvqittdspqdGslsGatleEavsWgkikakakkvkvvaDativlPllvaall 300
                   ++ +++++++tgfq+ ++g a++ +++m + +                           ifl+++++ +s G R++++ lv++k++d +vtta+++eedl+++++p+++gd+ +d+++Lr++ginRig+++vpn+++++fe+++++i+e++ ++q                            ++t+s++i++lg e+++ + s+l++a k++iP+fcPaltD+s+G++l+++  +     +D+ +D++++ndl++ s+ tg+++lGGgl+kh++ na+l+r+Gad  v+i+t+++ dGs+sGa ++Ea+sWgki+  ak vkv +Dati++Pl+v  ++
  MMETSP1061-20121228|31700_1  99 MLSKIMHSFRHTGFQATNLGLAVEQIQQMRKWRLsdvefkegvddpelrsgeirkrlrARIFLSYTSNQISCGQREVLRFLVQHKMVDCIVTTAGGIEEDLMKCFQPTFMGDFRLDGRSLRKKGINRIGNLLVPNKNYCQFEDWVSPIIEKMHDEQdekmikwaralaklestgngaeswpqkFVWTPSKFIHRLGTEINN-EESVLYWAAKNDIPVFCPALTDGSVGDMLYFHSYKRPgFILDIGEDIRRINDLAVRSHATGMVILGGGLVKHHTCNANLMRNGADWSVYINTGQEFDGSDSGASPDEAISWGKIRLTAKPVKVSCDATIAFPLIVSQTF 438
                  478899999999999999999999988887654445568889999999999999999999*************************************************************************************************************************9889****************.778999999***********************9985589************************************************************************************************9886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.37
# Mc/sec: 1648.08
//
Query:       MMETSP1061-20121228|31712_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.26
# Mc/sec: 294.44
//
Query:       MMETSP1061-20121228|31705_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 2296.61
//
Query:       MMETSP1061-20121228|31723_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 453.35
//
Query:       MMETSP1061-20121228|31722_1  [L=799]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (799 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 3766.40
//
Query:       MMETSP1061-20121228|31733_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 2428.60
//
Query:       MMETSP1061-20121228|31751_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-05   21.3   5.2    2.8e-05   21.3   3.6    2.8  2  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -15.8  15.7         1   4.1e+03      75     148 ..      67     143 ..       2     165 .. 0.69
   2 !   21.3   3.6   6.8e-09   2.8e-05      92     204 ..     234     338 ..     196     344 .] 0.56

  Alignments for each domain:
  == domain 1    score: -15.8 bits;  conditional E-value: 1
    TIGR00601  75 skkKavkak.aaePaatpesa..ptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdr 148
                  + +K+ k+k ++ P+ +++++  +++tp++    + ++++ a +  v   s+ +++++ ++ +++  s+e +++s++
  MMETSP1061-20121228|31751_1  67 TSSKSGKTKsSTRPPEESQLVdlTEATPTSHWKKIKSDANVAASKKVFTASKKKKSVANPTNSKKTKSVENATNSKK 143
                  45555555413456656655422555665555555555556666666666666666666666666666665555444 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 6.8e-09
    TIGR00601  92 esaptptpsatpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdretlvvGsereetveeimemGyereeverAlRAafnnPdRAveYL.ltGiP.edleaae 204
                  +s  +++ s+   s  +k++a Pa++ + +++ ++e+t    e+ +           ++    ++ ++ v+ ++emG+   e  +AlR a  + dRA ++L l G P e++e++e
  MMETSP1061-20121228|31751_1 234 ASKEASGSSTSSYSEETKSEAMPAASSSRDTPIRREQTRRMAEAASQ----------SSSTPNASFDHSVTALIEMGFRAVEARQALRDADGDMDRATDWLmLNGSPvEMIEDRE 338
                  11111121223333333444444444444444444333333332222..........244456899**********************************846799944555444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.22
# Mc/sec: 2063.83
//
Query:       MMETSP1061-20121228|31777_1  [L=127]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.7    1.5  18.5         10    1.4  12.9    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.4  12.9    0.0025        10     931    1000 ..      55     124 ..      30     127 .] 0.45

  Alignments for each domain:
  == domain 1    score: 1.4 bits;  conditional E-value: 0.0025
    TIGR00927  931 deeeiaddeevkdetgeqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeeeeeee 1000
                   + e++++++ +   ++eq ++a+ ++e++ +e+ +d+eg+ +  + ee +    ee + e +e +ee ee
  MMETSP1061-20121228|31777_1   55 SAETVDAETVATYVQNEQLAKAQGETESAGEEQQIDEEGEENPDEEEEIDVGSPEEADAEGDELDEEGEE 124 
                   3344444444444445555555555555555555555544333222222222222222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (127 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 698.44
//
Query:       MMETSP1061-20121228|31794_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1354.32
//
Query:       MMETSP1061-20121228|31787_1  [L=625]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-71  237.8   1.8    6.3e-58  193.8   0.0    3.1  2  TIGR00097 HMP-P_kinase: phosphomethylpyrimidine kinase
    2.6e-36  122.6   0.0    4.4e-36  121.8   0.0    1.3  1  TIGR00693 thiE: thiamine-phosphate pyrophosphorylase
    9.8e-15   52.5   0.0    1.9e-14   51.5   0.0    1.4  1  TIGR00687 pyridox_kin: pyridoxal kinase
    6.5e-08   30.1   0.0    1.3e-07   29.0   0.0    1.4  1  TIGR02152 D_ribokin_bact: ribokinase
    1.5e-06   25.3   0.0    3.1e-06   24.3   0.0    1.4  1  TIGR03828 pfkB: 1-phosphofructokinase
    2.8e-06   24.3   0.0    5.7e-06   23.3   0.0    1.4  1  TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family
     0.0034   14.6   0.0      0.006   13.8   0.0    1.5  1  TIGR01163 rpe: ribulose-phosphate 3-epimerase
     0.0045   14.0   0.0     0.0084   13.1   0.0    1.4  1  TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I
  ------ inclusion threshold ------
      0.015   12.7   0.0      0.053   10.9   0.0    1.8  2  TIGR01768 GGGP-family: geranylgeranylglyceryl phosphate synthase family protein
      0.033   10.8   0.0      0.057   10.0   0.0    1.3  1  TIGR01036 pyrD_sub2: dihydroorotate oxidase


Domain annotation for each model (and alignments):
>> TIGR00097  HMP-P_kinase: phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  193.8   0.0   1.5e-60   6.3e-58       1     180 [.      43     228 ..      43     246 .. 0.91
   2 !   38.3   0.8   4.7e-13   1.9e-10     190     253 ..     286     366 ..     269     367 .. 0.74

  Alignments for each domain:
  == domain 1    score: 193.8 bits;  conditional E-value: 1.5e-60
    TIGR00097   1 vltiAGsDsggGAGiqADlktfsalgvfglsvitaltAqNtrgVtsvleippdfveaqldavleDlkvdavKtGmlasaeivevvakklkeykve......klvvDpVmvaksgakLleeeavealkkkllplatlvtPNlpEaeallgvkikteedlkkaakklaelgakavlikGGhledeeav 180
                  v tiAGsDsggGAGiqADl++++a+g +g+s+it+ltAq +rgVt+++  p +f+e+ql a+  Dl ++a+K+Gml   e+ evv k lke++         +vvDpVm+++sg+kLl+++av+a+ +++ p a+++tPN  Eaeall+ k+kt +d+++ a++l ++g+++vl+kGGh+  ee+ 
  MMETSP1061-20121228|31787_1  43 VYTIAGSDSGGGAGIQADLQAIHAMGCHGCSAITCLTAQSSRGVTGIHVPPGSFLEEQLAALKGDLVPRAIKIGMLGTRELCEVVGKLLKEIHDGrdekkvWIVVDPVMISTSGSKLLDDDAVSAMIEHIFPYADIITPNKFEAEALLNRKLKTPKDIEEGARELLNMGCRSVLVKGGHTLLEESS 228
                  579**********************************************************************************999998753211112369****************************************************************************9766544 PP

  == domain 2    score: 38.3 bits;  conditional E-value: 4.7e-13
    TIGR00097 190 eilkaerietkntHGtGctlsaaiaaelakgle.................lkeavkeakefvtsaikksleiGkGqgplnh 253
                   ++++ r +t +tHGtGctls+aia+ la g e                 + +a   ak++v++ i+k++++G+G gp+ h
  MMETSP1061-20121228|31787_1 286 VWMRSVRWDTSHTHGTGCTLSSAIASALALGEEnrdeskgeavgatsaieIVDACCLAKAYVSAGIQKGVQLGSGPGPVAH 366
                  47889999********************988652222222222211111144566689*********************98 PP

>> TIGR00693  thiE: thiamine-phosphate pyrophosphorylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   1.1e-38   4.4e-36      16     195 ..     430     617 ..     423     619 .. 0.89

  Alignments for each domain:
  == domain 1    score: 121.8 bits;  conditional E-value: 1.1e-38
    TIGR00693  16 lleiveaalk.gGvtlvQlRekese.teevlaeaeelqelckkynvplivnDrvdlAlaldadgvhlGqdDlpveev....rkllgaeliiGlsvkkleelakaaaegadYigvGpifptstKkdkkavvglelleeiaakal.eipvvaIGGitl.enveevlkagvdgvavvsaimaaadvaaaak 195
                   +e++e+  +  Gvt +QlR k+++   ++ ++++ +qe ck+ +v+l +nD+++ A++++  gvh+Gq+Dl   ++     +l  + + +G+s+++  ela a    + Yi++Gp+++t++Kk + +++gl++++++++ ++ ++p+v IGGi+  e +++  +ag+d +av+sai++++d+a+ +k
  MMETSP1061-20121228|31787_1 430 TVEQIEQLTQiPGVTDIQLRIKDETdPVKIHERVKLCQEYCKSNGVNLWINDYWEAAVEAGCFGVHVGQEDLVKCMLagglDRLKSKGMALGISTHSYGELAVALGVNPTYISMGPVYATNSKKIQFHPQGLDTVRRWRKLIPpSMPFVTIGGINSlEAAKANREAGADCIAVISAITQSDDAATSVK 617
                  5677777766369*********9985778999999************************************8765541111689999****************************************************988779*********86266677789******************99876 PP

>> TIGR00687  pyridox_kin: pyridoxal kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.5   0.0   4.7e-17   1.9e-14      81     191 ..     115     230 ..     100     257 .. 0.83

  Alignments for each domain:
  == domain 1    score: 51.5 bits;  conditional E-value: 4.7e-17
    TIGR00687  81 sGYlgsaeqvaavvgivrqvkq..anPqalYvCDPvmgdkkkgvvvaedlaevlvekaiPvaDiitPnlfelelLterkvetleealaaadaLiakGpkivlvk...hLvragksr 191
                   G lg  e  + v + +++++    + ++  v DPvm  +    +  +d   +++e+  P aDiitPn+fe+e L +rk++t +++   a++L ++G + vlvk    L +  +s 
  MMETSP1061-20121228|31787_1 115 IGMLGTRELCEVVGKLLKEIHDgrDEKKVWIVVDPVMISTSGSKLLDDDAVSAMIEHIFPYADIITPNKFEAEALLNRKLKTPKDIEEGARELLNMGCRSVLVKgghTLLEESSSS 230
                  588899999999999999998621345566789***********************************************************************775333322222 PP

>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.0   0.0   3.2e-10   1.3e-07     168     221 ..     168     221 ..     152     233 .. 0.90

  Alignments for each domain:
  == domain 1    score: 29.0 bits;  conditional E-value: 3.2e-10
    TIGR02152 168 ldeellslvdiivpNetEaeiLtgievedledaekaaekllekgvkaviitlGs 221
                  + e+++ ++dii+pN+ Eae+L++ + ++ +d+e+ a++ll++g++ v+++ G+
  MMETSP1061-20121228|31787_1 168 MIEHIFPYADIITPNKFEAEALLNRKLKTPKDIEEGARELLNMGCRSVLVKGGH 221
                  55788999******************************************9986 PP

>> TIGR03828  pfkB: 1-phosphofructokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0   7.5e-09   3.1e-06     160     221 ..     159     220 ..     140     228 .. 0.85

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 7.5e-09
    TIGR03828 160 vilDtsgeaLlkvlkakplliKPNkeEleellgrelkteeevieaarkllekgvenvlislG 221
                  +  D +  a+ + +    ++i PNk E e+ll+r+lkt +++ e ar+ll++g++ vl+  G
  MMETSP1061-20121228|31787_1 159 LLDDDAVSAMIEHIFPYADIITPNKFEAEALLNRKLKTPKDIEEGARELLNMGCRSVLVKGG 220
                  5555555666666667799***************************************9766 PP

>> TIGR03168  1-PFK: hexose kinase, 1-phosphofructokinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.0   1.4e-08   5.7e-06     163     221 ..     162     220 ..     149     225 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 1.4e-08
    TIGR03168 163 DtsgeaLrealkakplliKPNkeEleelvgrelkteeevieaarellekGvenvlvSlG 221
                  D    a+ e +    ++i PNk E e+l++r+lkt +++ e arell++G++ vlv  G
  MMETSP1061-20121228|31787_1 162 DDAVSAMIEHIFPYADIITPNKFEAEALLNRKLKTPKDIEEGARELLNMGCRSVLVKGG 220
                  4445555566666889***************************************9766 PP

>> TIGR01163  rpe: ribulose-phosphate 3-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.5e-05     0.006     144     208 ..     555     617 ..     479     620 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.5e-05
    TIGR01163 144 kFipevlekirevrklidekekeilievDGGvkeeni.aevaeaGadvlvagsaifkaddykeaik 208
                  +F p+ l+ +r+ rkli  +   ++i   GG+++ ++ ++ +eaGad++ + sai ++dd ++ +k
  MMETSP1061-20121228|31787_1 555 QFHPQGLDTVRRWRKLIPPSMPFVTI---GGINSLEAaKANREAGADCIAVISAITQSDDAATSVK 617
                  57777788888888888777664444...99998665055689*****************999987 PP

>> TIGR02198  rfaE_dom_I: bifunctional protein RfaE, domain I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   2.1e-05    0.0084     188     232 ..     173     217 ..     156     237 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 2.1e-05
    TIGR02198 188 YkgatlltPNrkEleeavg.aveeeeelvkaaeklleeleleallv 232
                  +  a ++tPN+ E+e++++ ++++ +++++ a++ll+ + ++++lv
  MMETSP1061-20121228|31787_1 173 FPYADIITPNKFEAEALLNrKLKTPKDIEEGARELLN-MGCRSVLV 217
                  56699**************99**************97.57788777 PP

>> TIGR01768  GGGP-family: geranylgeranylglyceryl phosphate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.79   3.2e+02      11      40 ..     195     224 ..     189     261 .. 0.76
   2 ?   10.9   0.0   0.00013     0.053     180     219 ..     575     613 ..     529     617 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.79
    TIGR01768  11 ttpeeadeiakavaeaGtDailvgGsqgvt 40 
                  +tp++ +e a+++++ G  ++lv G ++  
  MMETSP1061-20121228|31787_1 195 KTPKDIEEGARELLNMGCRSVLVKGGHTLL 224
                  468889999999999999999999987754 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 0.00013
    TIGR01768 180 vkLivGGGirsvEkArklaeagADvvvvGnvieeddvdkl 219
                  ++ +  GGi+s E+A+   eagAD + v   i ++d d++
  MMETSP1061-20121228|31787_1 575 MPFVTIGGINSLEAAKANREAGADCIAVISAITQSD-DAA 613
                  566777*******************98888888776.665 PP

>> TIGR01036  pyrD_sub2: dihydroorotate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00014     0.057     275     321 ..     561     607 ..     554     618 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00014
    TIGR01036 275 teiirrlakelkgrlpligvGGidsakealekikaGasLlqiYsali 321
                   +++rr  k +   +p +++GGi+s+++a+   +aGa+ + + sa+ 
  MMETSP1061-20121228|31787_1 561 LDTVRRWRKLIPPSMPFVTIGGINSLEAAKANREAGADCIAVISAIT 607
                  578999999999****************************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (625 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.38
# Mc/sec: 2170.87
//
Query:       MMETSP1061-20121228|31792_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.7   0.0     0.0018   15.9   0.0    1.3  1  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.5e-07    0.0018      33      70 ..      44      82 ..      39      92 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.5e-07
    TIGR00249 33 rvaqwLkkagveldrilvSplvRAeqtaeivadald.es 70
                  +a +L+++  +++ri++ p  R e+  + v+++l+ ++
  MMETSP1061-20121228|31792_1 44 TLASFLNDHDEQVERIMHGPTSRVEDANKSVMQQLNnQN 82
                 6799*******************************9333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2330.12
//
Query:       MMETSP1061-20121228|31816_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 2301.89
//
Query:       MMETSP1061-20121228|31824_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 384.49
//
Query:       MMETSP1061-20121228|31829_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-25   86.1   0.0    9.8e-18   62.3   0.0    2.1  2  TIGR00569 ccl1: cyclin ccl1


Domain annotation for each model (and alignments):
>> TIGR00569  ccl1: cyclin ccl1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.3   0.0   2.4e-21   9.8e-18       1     164 [.      12     221 ..      12     243 .. 0.81
   2 !   21.7   0.0   5.5e-09   2.3e-05     194     294 ..     298     395 ..     273     407 .. 0.77

  Alignments for each domain:
  == domain 1    score: 62.3 bits;  conditional E-value: 2.4e-21
    TIGR00569   1 yrnssqkrsWtftsedqlsekRvdane.........................kfreee...eeeekvleakaitLtveEElelvkyYekklldla..salkptlPk..evvgtAilyFkRFyLnnsvmeydPkiivltcvFlAcKve.efn.....vsieqFvknlket.........rekaleevLeyEllliqsLkfsLlvhnPyrPle 164
                  ++ ssq + W+f  e  l e R da +                         k  +++   + ++ ++     t+t+ E  +l+++ + ++++l   +a+ p l +  +v++tAi+ F++FyL nsv++++P+++ + ++ lA K++ e n     +s   Fv +++ +         r  ++ e+ e E +l+   ++ L  h+Py  ++
  MMETSP1061-20121228|31829_1  12 FEMSSQAKYWMFD-EASLLECRKDACNslspklgtargkprvrkfacgyngrKATTSTtkgNINKPSRIDPSLTMTPGEQETLIHFHAHQIQKLIgpNAIFPQLKRgaSVLSTAIMLFRKFYLSNSVIDFHPRKLAAASALLAVKTDcERNlpidiLSHGTFVVEMRAQndplsmdelRGVTIHEIEEAERQLLLGCDYRLRSHHPYGAIK 221
                  678*********9.*********98666***************99998877633333343233444455556789999***************9644788899875548************************************9864442222246678**99998878999888888899999*********************8776 PP

  == domain 2    score: 21.7 bits;  conditional E-value: 5.5e-09
    TIGR00569 194 vlltDvvllytPsqiaLaailseasrlvlklesrltealsvkenreelpqlidiv.relkklkkkeeeerseevaklkkkleeCksalenlss..vkerkrkay 294
                   ++tD+ +l+ P qia aa+  + +       s+  ea + +   +  p++ + + ++  ++ + e+ee++eev k+   le+C  +  ++ s   ++++r++ 
  MMETSP1061-20121228|31829_1 298 LVYTDINFLFQPGQIAFAAVALALDSHAY---SYDDEAPTCN---RLGPKMREYMcARFSQKSEDEIEEYEEEVSKIISSLEHCSAIDLEMFSpfWQYHQRRYA 395
                  579*****************888777777...5666555555...666777776525666666778999****************9988776667555555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2418.23
//
Query:       MMETSP1061-20121228|31863_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 373.01
//
Query:       MMETSP1061-20121228|31879_1  [L=303]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.12    7.7  12.2       0.14    7.5   8.5    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger
        1.4    5.0  12.6        1.5    4.8   8.7    1.0  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        1.4    5.0  17.5        1.8    4.7  12.2    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        2.2    4.5  17.7        2.7    4.2  12.3    1.1  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
          3    4.3   7.1          4    3.9   5.0    1.3  1  TIGR00939 2a57: nucleoside Transporter
        3.2    4.2   7.4        4.1    3.8   5.1    1.1  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   8.5   0.00021      0.14     799     914 ..      53     153 ..      24     216 .. 0.52

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00021
    TIGR00927 799 eaerkgedegegeieakeaevkGeeeeeeveaeeeteaeGdedegeieaeeeGeekededegeieakeevevegdedeteieaeeeaevkededeGeieaeedgevkGdegeeqkv 914
                  ++e+k               ++ ++++e+ ++++++e+e ++ e e + e+e + +ede e+e  + ee  ++ de+e + e   + evk  + + ei +    e++ +++  ++ 
  MMETSP1061-20121228|31879_1  53 KSEKK--------------SKESKSKTEKSHKQQKSEKERKKTEAELKPEAERKPEEDEAETEDYSPEEKVAKNDEKEKK-EKPVDDEVKTLNMKDEIPSARIFEQQKKDEVTSRI 153
                  33322..............2222222223333344444444445555555555555555444444444444444443333.33444555555555555554444444444432222 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8   8.7    0.0023       1.5     192     417 ..      35     182 ..      10     239 .. 0.48

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.0023
    TIGR00934 192 sGelvkrdeqdsvhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdkiseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngnkkdasksnes 417
                  +G+ ++r e d v +++ ++++ks  s++++ +s + ++s++++k+t++  +  a+r+ ++d   ++ y++++++ +++e ++k++   +e+++                                                                              +  k+   + r  ++ kk e  +++fe+ +y+k+sd      ++  ++s+   +
  MMETSP1061-20121228|31879_1  35 NGSDQSRYEVDLVRPRDLKSEKKSKESKSKTEKSHKQQKSEKERKKTEAELKPEAERKPEEDEAETEDYSPEEKVAKNDEKEKKEKPVDDEVKT------------------------------------------------------------------------------LNMKDEIPSARIFEQQKKDEVTSRIFEDVQYQKDSDGRDRVASTPGSRSSIVRE 182
                  3333333343444444333333333333333333344444444444444333333333333333333333333333333322222222222222..............................................................................222222222222222333344455555555555555554444443333333333 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7  12.2    0.0027       1.8     319     436 ..      65     191 ..      33     211 .. 0.37

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0027
    TIGR02442 319 qekeekkleekkeeakpdeekedeseekekeeskkqe....eeepgkddekeedekeeaeeeaes......aeevalepagkifrvkllavskar.argasGrrsktrs..dkrgryvkaernreeaddla 436
                   ek++k+++++ke++k+++e + e+e+k++e++ ++e    ee+  k+deke++ek   +e + +       ++  +++++k  +v +  +++ + ++++ Gr  +++s   +r+ +v++  n+++ d++ 
  MMETSP1061-20121228|31879_1  65 TEKSHKQQKSEKERKKTEAELKPEAERKPEEDEAETEdyspEEKVAKNDEKEKKEKPVDDEVK-TlnmkdeIPSARIFEQQKKDEVTSRIFEDVQyQKDSDGRD-RVAStpGSRSSIVRE--NSNTFDSIP 191
                  111111111111111111111111112222221222211111222222222222222222211.1111111233333444444444444455555455555554.444413444444443..333455555 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2  12.3    0.0039       2.7      16     142 ..      23     151 ..       8     160 .. 0.72

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0039
    TIGR03319  16 yllakkiaekkleeaeeeakkiieeakkeaeakkkealleakeevkklreelekelkerrkelqklekrlkqkeekl..drkkeklekkeeelekkekeleekekeleekeeeleellkeqkeeLekis 142
                    +++ +++ +++ ++++  ++     ++ +++kk++  ++k+e  +++++ eke k+ ++el+ + +r  +++e+   d   e+   k++e ekkek ++++ k+l+ k+e  +  + eq+++ e  s
  MMETSP1061-20121228|31879_1  23 QPIRSLESDIQINGSDQSRYEVDLVRPRDLKSEKKSKESKSKTEKSHKQQKSEKERKKTEAELKPEAERKPEEDEAEteDYSPEEKVAKNDEKEKKEKPVDDEVKTLNMKDEIPSARIFEQQKKDEVTS 151
                  444555556666666666667766777999999999999*****9999**************9977666655444330033445555677788999999999999999999998888888887766655 PP

>> TIGR00939  2a57: nucleoside Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   5.0    0.0059         4     200     266 ..      65     128 ..      10     135 .. 0.68

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.0059
    TIGR00939 200 farkylekkldkeaqedetkkelrskaeendepakgdkeskteelsaekepeskeeeevelktsvft 266
                    + + ++k   e++ ++t++el+ +ae++ e  + + e+ + e +   ++++ke++e+++  +v+t
  MMETSP1061-20121228|31879_1  65 TEKSHKQQK--SEKERKKTEAELKPEAERKPEEDEAETEDYSPEEKVA-KNDEKEKKEKPVDDEVKT 128
                  333344444..3566667777787777744443333333333333333.233356677777666665 PP

>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   5.1    0.0059       4.1     350     447 ..      52     154 ..      11     159 .. 0.58

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.0059
    TIGR00860 350 llkkkeegeekrrpaleakelsslelrakkgg....edleskteeeallksvppseasldlakileevr.iakrlrkkdeseevakeklkrakviDklsrlvF 447
                  l+ +k+++e+k++++ ++k+ +s + r k+      e   +++e+ea+++ + p+e+  +  +  ++ + + ++++  + + e+ + ++++ ++ D ++  +F
  MMETSP1061-20121228|31879_1  52 LKSEKKSKESKSKTEKSHKQQKSEKERKKTEAelkpEAERKPEEDEAETEDYSPEEKVAKNDEKEKKEKpVDDEVKTLNMKDEIPSARIFEQQKKDEVTSRIF 154
                  2222222222222222222222211111111112223334566677777777887776666666666666888888888888888888888888887777766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (303 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       333  (0.0811799); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 1428.31
//
Query:       MMETSP1061-20121228|31904_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 418.92
//
Query:       MMETSP1061-20121228|31907_1  [L=346]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-19   65.6   0.1    1.7e-10   38.5   0.0    2.2  2  TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase


Domain annotation for each model (and alignments):
>> TIGR00667  aat: leucyl/phenylalanyl-tRNA--protein transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.5   0.0   4.1e-14   1.7e-10      32      98 ..      84     148 ..      60     152 .. 0.87
   2 !   25.0   0.0   5.9e-10   2.4e-06      98     177 ..     171     252 ..     163     266 .. 0.92

  Alignments for each domain:
  == domain 1    score: 38.5 bits;  conditional E-value: 4.1e-14
    TIGR00667  32 vlvPldeslrvakslkrvlkksryrvsvnlafsqviegCaadrpegtWisdelvevyhelhkaGlah 98 
                   ++ l e+l+v+ks+++  k+  +r +vn+++++v+egC  +     W+  +lv v++++++aG+  
  MMETSP1061-20121228|31907_1  84 SVISLPEGLHVSKSIRKKSKR--FRLTVNQSLDRVVEGCHKQHGHTCWLYPNLVRVFKKINEAGQVD 148
                  445567***********9998..*****************************************875 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 5.9e-10
    TIGR00667  98 hsvevWqgd..elvGGllGialgglfigesmfsrltnaskvallklvehlsrrggklldaqvlnphlaslGayeveekeykk 177
                  +s+evW++d  el+ G lG ++g+++ + + f   + a  v l+ l   ls+ g+kl d  +  ++ + +G   +++k++  
  MMETSP1061-20121228|31907_1 171 YSIEVWNEDtgELAAGELGYTVGSIYTSLTGFAAQDSAGSVQLVSLGRMLSKLGFKLWDLGMDMEYKRDIGSHGMKRKDFVS 252
                  79******9778******************************************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (346 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1826.73
//
Query:       MMETSP1061-20121228|31915_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-08   29.9   0.1    2.6e-05   21.3   0.0    2.1  2  TIGR02651 RNase_Z: ribonuclease Z
  ------ inclusion threshold ------
      0.024   10.9   0.0      0.032   10.4   0.0    1.2  1  TIGR00649 MG423: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02651  RNase_Z: ribonuclease Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0    0.0003      0.61       2      24 ..      63      85 ..      62      91 .. 0.89
   2 !   21.3   0.0   1.3e-08   2.6e-05      24      65 ..     129     174 ..     121     175 .] 0.80

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0003
    TIGR02651  2 itfLGtggavPtkeRnlssialk 24
                 + +LGtg a+P+++R  s++al 
  MMETSP1061-20121228|31915_1 63 LLVLGTGCATPSAYRGASGYALV 85
                 689***************99986 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 1.3e-08
    TIGR02651  24 klegeliLfDcGEgtQrqllkskis....fkkidkIfitHlHgDHi 65 
                  + +++++++DcGEg+   l ++  +     ++++ I i+H H DH+
  MMETSP1061-20121228|31915_1 129 ECNDQIYILDCGEGVSTMLSRNCGRvkdwATRVRGIWISHAHLDHY 174
                  567999*********999988765511224689************6 PP

>> TIGR00649  MG423: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   1.6e-05     0.032      15      73 ..     124     175 .]     118     175 .] 0.75

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 1.6e-05
    TIGR00649  15 NmtvvevddevvildvGiklpedellgvdvviPdfsylkenedkvkgivlthghedhiG 73 
                  N+t  e++d++ ild G  +    +l+      +   +k+ + +v+gi ++h+h+dh G
  MMETSP1061-20121228|31915_1 124 NTTNTECNDQIYILDCGEGVS--TMLSR-----NCGRVKDWATRVRGIWISHAHLDHYG 175
                  666667777777777775543..35554.....456789999***************87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1215.69
//
Query:       MMETSP1061-20121228|31910_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.2e-30  102.0   0.4    1.2e-29  101.5   0.2    1.3  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.5   0.2     3e-33   1.2e-29       1     148 [.      45     193 ..      45     198 .. 0.88

  Alignments for each domain:
  == domain 1    score: 101.5 bits;  conditional E-value: 3e-33
    TIGR00401   1 ekitfalGCfWgveklfrkidgvektkvGyln.......gktenPtyeevCsgdtghaevvkveydpkvvsleeLldvffevidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqe..sakykkkivteiekaenfyeaeeyhqqylkkn 148
                  e++ f++GCfW   +   kidgv +t++Gy++         ++ P+ye+vC g  + +e v+v+yd +++s+ eLld ffe+  P  ++r       qy s+i+ ++de+ k+aea ke+ +e  s  +k++ +    + ++fy ae+yhq+y +k 
  MMETSP1061-20121228|31910_1  45 EEASFGMGCFWEPAEELLKIDGVIDTVSGYTGnkkfdddPSKTIPSYESVCYGR-QWVEGVRVKYDTDKISYTELLDSFFETQKPQPGSR-------QYSSVIFPHDDEQLKIAEAWKEKSREriSDGFKSDWTSIEYPRTKFYAAEGYHQRYWQKQ 193
                  5789***************************954444333345577******97.799*************************9998877.......599****************99999987788899999888899***************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1511.88
//
Query:       MMETSP1061-20121228|31931_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 628.52
//
Query:       MMETSP1061-20121228|31933_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1543.70
//
Query:       MMETSP1061-20121228|31942_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|31955_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|31944_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 721.54
//
Query:       MMETSP1061-20121228|31972_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03   11.8   0.0      0.031   11.8   0.0    1.1  1  TIGR00161 TIGR00161: TIGR00161 family protein


Domain annotation for each model (and alignments):
>> TIGR00161  TIGR00161: TIGR00161 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.6e-06     0.031     130     182 ..      20      76 ..       5      83 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.6e-06
    TIGR00161 130 aanskelieelkdyveifkfGvvsGiaGslltkCaandlpaivl....laetlgirP 182
                  + + +++++++k + e++  G + G +G+ l +  + ++ ++ l    l e+l  +P
  MMETSP1061-20121228|31972_1  20 VEEVHQVLDQVKHFTEVVRNGEILGYTGKRLRNIISVGIGGSYLgpefLHEVLKTEP 76 
                  45567799***************************9999999873333555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.30
# Mc/sec: 373.97
//
Query:       MMETSP1061-20121228|31970_1  [L=569]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-09   31.4  97.9    2.9e-05   19.8  39.4    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00054   15.6 102.4     0.0067   11.9  44.0    2.2  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8  39.4   1.4e-08   2.9e-05     260     521 ..      88     344 ..      69     351 .. 0.78
   2 !   16.9  23.9   1.1e-07   0.00022     680     867 ..     347     538 ..     343     545 .. 0.75

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.4e-08
    TIGR02168 260 aelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeele.eleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknkskla 521
                  +e+   e   e+l+l++ el ee++  ++e  +l  +i+++++ + + +e+l++++++ +e +  le++e+ + + +  ++el+e+ ++l+ e  s e+  +++e+++ +le ++ + e+e ++l++ + + + q+++l+++  ++ ++ e +    ++l ++ie++ekkl++++a+ k++qe+l+++ee le +l+e+++ l+e +++ + e +++++++ +++++l++ q+r+e ++s +e+ ++++e+ k+ ++n+ + +
  MMETSP1061-20121228|31970_1  88 KEV---EMIREQLDLKQIELLEEQNLFRDEKRSLMGKIAEFTSILSRRDEELAEASEKDQEQSLYLEKQEELEGTIKSLKTELQEKSDSLEFEKRSSEELRSRFEDAADALEYEQMNFEKERTALQNLMTQERLQVKALQEKYDENGKTFETAR---KELLSKIEDEEKKLSDTKAKWKQTQEQLQKVEERLEvSLREKESLLKESEARFDTEKAAMSSEISELKNQLKKEQSRMEEIKSGLEKENKEYEKSKNTMQNQIEYE 344
                  333...3333455666667777777777777888888888888888888888888888888888888777777777777777777777777777777777777777777777777777777777777777777777777777766666666555...5589**************************998877367888888899999**************************************************98865 PP

  == domain 2    score: 16.9 bits;  conditional E-value: 1.1e-07
    TIGR02168 680 eieeleeeieeleekiae....lekelkelekeleeleeeleklrkeleelerkl.selkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieele 867
                   i+el+++++e e+k++     l++e+k++ ++l+++e++l++ r +  ++++ l ++l +e++  + + +q+++r++++++e+++l ++ + +++  +e++   k+ e+++++++++i++l+++l+++++++ e +++++ ++  e+++    +++le  ++ l+k + + ++ i+e++e+ie++e ++++l 
  MMETSP1061-20121228|31970_1 347 LIKELRNQLDEEESKYKTerstLDQEIKSITENLTNVEKQLANERVNFSKEKKMLeQKLAEEIRVGRLKKRQMKQRYDEIRQEMTDLWQSSKRQSR--QEQNRLRKKYERKLDTVQKQIAKLEKDLTSEKKRVVEGQKQMEaRHAVEIQSRDVMIAELEGSVSTLRKVIVDKDQIIKEKNEQIERYETSFRQLA 538
                  566777776666666543111134444445555555555544444444333333313445666667778888888899999888888877666555..555566799**********************************9*********************************************9999886 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9  44.0   3.3e-06    0.0067     224     494 ..      93     363 ..      69     368 .. 0.64
   2 !   11.8  37.7   3.5e-06    0.0072     232     475 ..     294     537 ..     293     540 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3.3e-06
    TIGR02169 224 leltlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklg..eeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkel....keeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrll.eelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerela 494
                  ++ +l lk++e le+q +  + e  +l  +++++++ ++ + +el+e+ +k +e +  +ek+   e+ +  +k++l+e + ++e  +r+ +e +++ eda++ l+  +    + ++e ++l++ +++e+ + ++l+e+++e+    ++ ++el +++e+++k+   ++++ k+ +e+l+k++e+l+ + re++ ll e   r + e a +  e+ ++++++++ ++++ee++  ++k++++ e+ k+ +++   +++  ++ +++l ++l e e++++
  MMETSP1061-20121228|31970_1  93 IREQLDLKQIELLEEQ-NLFRDEKRSLMGKIAEFTSILSRRDEELAEASEKDQEQSLYLEKQEelEGTIKSLKTELQEKSDSLEFEKRSSEELRSRFEDAADALEYEQM---NFEKERTALQNLMTQERLQVKALQEKYDENgktfETARKELLSKIEDEEKKLSDTKAKWKQTQEQLQKVEERLEVSLREKESLLkESEARFDTEKAAMSSEISELKNQLKKEQSRMEEIKSGLEKENKEYEKSKNTMQN---QIEYEEKLIKELRNQLDEEESKYK 363
                  3344444444444433.33444555555666666666666666666666666665555555321144556666666666666666666666666666666665554444...445556666667778888888888888776222255667788999****************************98888877765166679999***************************9999998888776665543...333333333333333333333333 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 3.5e-06
    TIGR02169 232 elealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeie.elereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleee.laelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrkl 475
                  e+ a+  ++++++++l++ +  +e++++ +e+ +ke+e+ ++++++  +  ekl +e  +++ e+  + k e++ l+++i+   e+l ++e++la+  ++ +k k+ +e +l++ei+  + +++++k++++e ++e+ +l +  +  +   +e  +  k++++kl+ +++++ +l+++l   + +  + +++  a++  e+++    iaele ++ +l++ i  ++q +++ +e+ e +e + r+l
  MMETSP1061-20121228|31970_1 294 EKAAMSSEISELKNQLKKEQSRMEEIKSGLEKENKEYEKSKNTMQNQIEYEEKLIKELRNQLDEEESKYKTERSTLDQEIKSITENLTNVEKQLANERVNFSKEKKMLEqKLAEEIRVGRLKKRQMKQRYDEIRQEMTDLWQSSKRQSR--QEQNRLRKKYERKLDTVQKQIAKLEKDLTSEKKRVVEGQKQmEARHAVEIQSRDVMIAELEGSVSTLRKVIVDKDQIIKEKNEQIERYETSFRQL 537
                  67789999******************************999999988888899999999******************************************99999886369****************************998666554..44555667899999999999999995544433333333322034455688888889999999999999999999999999999999999988775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (569 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       770  (0.187713); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        20  (0.00487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 1.20u 0.15s 00:00:01.35 Elapsed: 00:00:00.79
# Mc/sec: 950.66
//
Query:       MMETSP1061-20121228|31984_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 365.97
//
Query:       MMETSP1061-20121228|31991_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|32006_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 534.24
//
Query:       MMETSP1061-20121228|32010_1  [L=245]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (245 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1616.87
//
Query:       MMETSP1061-20121228|32019_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 666.89
//
Query:       MMETSP1061-20121228|32013_1  [L=513]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   14.6   3.0     0.0013   14.3   2.1    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   2.1   3.3e-07    0.0013     390     507 ..     339     454 ..     300     501 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 3.3e-07
    TIGR02169 390 elkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseees 507
                  ++ +++ +    l + +r+l +l+ e++rl  e+++++  l +i + ++ele++le+++e++ +  q   +l    ++ae   ++  e  +++e +l ++ + l e  a+ ++++ + 
  MMETSP1061-20121228|32013_1 339 AEAKRVCEFDAVLRDNQRDLAKLTTEAQRLMIEQEQVERGLDGIGAFQNELENTLEAVEEQVDAIFQSQGHLTPLDADAE--RERAYEMAKQVEYRLDHVTETLRETFATLNQANAQA 454
                  44455555555566778888888899999999999999999999999999999988888887766555444443332222..223334444555555555555555555554444443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (513 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 1991.48
//
Query:       MMETSP1061-20121228|32029_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 449.74
//
Query:       MMETSP1061-20121228|32073_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 611.95
//
Query:       MMETSP1061-20121228|32091_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 2555.31
//
Query:       MMETSP1061-20121228|32135_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1043.91
//
Query:       MMETSP1061-20121228|32126_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1361.14
//
Query:       MMETSP1061-20121228|32151_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-09   33.8   0.5    4.6e-09   33.8   0.3    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    6.7e-09   33.1   0.1    7.8e-09   32.9   0.1    1.0  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
    1.1e-06   25.2   0.4    1.5e-06   24.8   0.3    1.2  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    1.1e-05   22.5   0.0    1.2e-05   22.4   0.0    1.1  1  TIGR01649 hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
    8.7e-05   19.3   0.1    8.7e-05   19.3   0.1    1.1  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family
    9.2e-05   20.0   0.1    0.00014   19.4   0.0    1.3  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
    0.00039   18.0   0.1     0.0004   17.9   0.1    1.2  1  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.3   7.9e-12   4.6e-09     192     284 ..       3      95 ..       1     102 [] 0.73

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 7.9e-12
    TIGR01628 192 edklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgra..qkraeReaelkakfeelkqerkekaq 284
                   ++l  +F+k+G +  + + + +k+  rg afv ye+  dAk Av++l g +++  +   +ly ++a  q+rae e+  k++ e ++  +k+kaq
  MMETSP1061-20121228|32151_1   3 AEELYGIFGKYGAVYQIRMGEKHKDT-RGTAFVVYEDIYDAKAAVDHLSGFNVG-GRYLVVLYYQPAkfQRRAEAEEKQKELEELRRRVQKKKAQ 95 
                  6889999*******988876666555.8**************************.7778888888752256665554444444444444444444 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.9   0.1   1.3e-11   7.8e-09     231     328 ..       1      95 [.       1     101 [. 0.83

  Alignments for each domain:
  == domain 1    score: 32.9 bits;  conditional E-value: 1.3e-11
    TIGR01622 231 itEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasDvteesdaslaskfedsfdeseqsgldlnte 328
                  +t +eL +iF  +G + ++++    +   ++G  F+ ++d   ak+A  +l G+++ GR + v + +  + +  a++++k+++ ++e  +  ++ +++
  MMETSP1061-20121228|32151_1   1 MTAEELYGIFGKYGAVYQIRMGEKHKD--TRGTAFVVYEDIYDAKAAVDHLSGFNVGGRYLVVLYYQPAKFQRRAEAEEKQKE-LEELRRRVQKKKAQ 95 
                  78899***********98888665554..7************************************99888888877777777.66666655555544 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.3   2.6e-09   1.5e-06     440     508 ..       9      72 ..       2      74 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 2.6e-09
    TIGR01642 440 easkyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedkykkg 508
                   ++kyG + +i++      ++ t G+   F+ y d+ +a+ A ++l G   ++r +v+ +y++ k++++
  MMETSP1061-20121228|32151_1   9 IFGKYGAVYQIRMGEK---HKDTRGT--AFVVYEDIYDAKAAVDHLSGFNVGGRYLVVLYYQPAKFQRR 72 
                  589********98776...5666665..7*************************************997 PP

>> TIGR01649  hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0     2e-08   1.2e-05     311     370 ..       1      63 [.       1      83 [. 0.83

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 2e-08
    TIGR01649 311 vtpdalFnlfgvYGdvervkilknkke...talvemadpqqaqlalthLdkvklfgkklrvav 370
                  +t+++l+ +fg YG v ++++  + k+   ta+v + d ++a+ a++hL + ++ g+ l v  
  MMETSP1061-20121228|32151_1   1 MTAEELYGIFGKYGAVYQIRMGEKHKDtrgTAFVVYEDIYDAKAAVDHLSGFNVGGRYLVVLY 63 
                  7999****************97766652228*********************99999988765 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.1   1.5e-07   8.7e-05      73     132 ..       4      61 ..       1      85 [. 0.90

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1.5e-07
    TIGR01648  73 delvPlfekvGkiyelrlmmdldGknrGyafvtfcnkeeakeavkelnnyeirpGrllGv 132
                  +el  +f k G +y++r+  + + + rG afv++ +  +ak av +l  +++  Gr+l v
  MMETSP1061-20121228|32151_1   4 EELYGIFGKYGAVYQIRMG-EKHKDTRGTAFVVYEDIYDAKAAVDHLSGFNV-GGRYLVV 61 
                  69999************75.566789**********************9998.5777765 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   2.3e-07   0.00014     281     344 ..       2      63 ..       1      70 [. 0.88

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 2.3e-07
    TIGR01661 281 tdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvsf 344
                  t e +  +fg++Gav ++++      +  +G +fv   +  +a  a+  l G+++g+r l v +
  MMETSP1061-20121228|32151_1   2 TAEELYGIFGKYGAVYQIRMGEKH--KDTRGTAFVVYEDIYDAKAAVDHLSGFNVGGRYLVVLY 63 
                  56778899********99987665..8899****************************998865 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1   6.8e-07    0.0004     206     256 ..       2      50 ..       1      95 [. 0.72

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 6.8e-07
    TIGR01659 206 tddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisaln 256
                  t ++l  ifgkyg + q  +  +k+    rg afv ++   +a+ a+  l 
  MMETSP1061-20121228|32151_1   2 TAEELYGIFGKYGAVYQIRM-GEKHK-DTRGTAFVVYEDIYDAKAAVDHLS 50 
                  56677777777777777543.34443.457777777777777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       314  (0.076548); expected 82.0 (0.02)
Passed bias filter:                      239  (0.0582643); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 434.29
//
Query:       MMETSP1061-20121228|32139_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-12   43.3   0.0    1.2e-11   42.5   0.0    1.4  1  TIGR00125 cyt_tran_rel: cytidyltransferase-related domain
    6.5e-08   30.4   0.0    2.2e-07   28.6   0.0    1.9  1  TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II
    3.6e-06   25.0   0.0      6e-06   24.2   0.0    1.4  1  TIGR01518 g3p_cytidyltrns: glycerol-3-phosphate cytidylyltransferase


Domain annotation for each model (and alignments):
>> TIGR00125  cyt_tran_rel: cytidyltransferase-related domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.5   0.0   8.9e-15   1.2e-11       2      64 ..     432     495 ..     431     496 .. 0.97

  Alignments for each domain:
  == domain 1    score: 42.5 bits;  conditional E-value: 8.9e-15
    TIGR00125   2 vvfvGtFdplHlGHlklleeakelfdelivgvgsdefvnpekg.pvtsaeerlemlkalkyvde 64 
                  v+++G +d+ H GH  l ++a+  +++l+vgv  d+ +n++k+ p++s  er++ ++a+k+v +
  MMETSP1061-20121228|32139_1 432 VYCDGVYDLCHIGHKVLFQNALTFGNRLYVGVVGDKDANAYKRpPIMSSAERCAEVEACKAVTK 495
                  89**********************************************************9975 PP

>> TIGR02199  rfaE_dom_II: bifunctional protein RfaE, domain II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.6   0.0   1.6e-10   2.2e-07      14      82 ..     432     498 ..     427     566 .. 0.84

  Alignments for each domain:
  == domain 1    score: 28.6 bits;  conditional E-value: 1.6e-10
    TIGR02199  14 vftnGcfDllhaGhvkyLekarklgdlLvvglnsDasvkrlkgekrPinseedraevLaaLeavDlvvv 82 
                  v  +G++Dl h Gh  + ++a ++g++L vg+  D+  +  k +  Pi+s ++r + ++a +av  v+ 
  MMETSP1061-20121228|32139_1 432 VYCDGVYDLCHIGHKVLFQNALTFGNRLYVGVVGDKDANAYKRP--PIMSSAERCAEVEACKAVTKVIA 498
                  7899************************************9987..*********99999999988874 PP

>> TIGR01518  g3p_cytidyltrns: glycerol-3-phosphate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   4.4e-09     6e-06       3     121 ..     434     560 ..     432     564 .. 0.80

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 4.4e-09
    TIGR01518   3 vygtfdllheghinllkkakqlgdklivalstdefnlekkkkayqsyekrklvleairyvdlvipeks.weqkksdiaefdidvlvmgddwkgkfdflkeevtlkv......l.ylprtkevsttki 121
                    g +dl h gh  l+++a   g++l v++  d+     k+   +s  +r   +ea + v +vi e   +   ++ ++ ++i v++ g+++  +f   k++   +v         lprt+++st+++
  MMETSP1061-20121228|32139_1 434 CDGVYDLCHIGHKVLFQNALTFGNRLYVGVVGDKDANAYKRPPIMSSAERCAEVEACKAVTKVIAEAPcFGLTREFLDLHQIHVVAYGEEYLERFPDPKDDPYYRVpremgiArPLPRTQGLSTSDL 560
                  5799***************************99877777777888888999999************8626777888999************999977666543333111111224888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 2820.66
//
Query:       MMETSP1061-20121228|32159_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 406.53
//
Query:       MMETSP1061-20121228|32161_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1671.86
//
Query:       MMETSP1061-20121228|32182_1  [L=894]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   19.0   0.0    0.00018   18.3   0.0    1.2  1  TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
    0.00051   17.6   0.0     0.0011   16.5   0.0    1.4  1  TIGR00095 TIGR00095: RNA methyltransferase, RsmD family


Domain annotation for each model (and alignments):
>> TIGR00479  rumA: 23S rRNA (uracil-5-)-methyltransferase RumA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   8.8e-08   0.00018     288     374 ..     716     805 ..     706     812 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 8.8e-08
    TIGR00479 288 alelqgeekvvDaycGvGtftlplAkqaksvvgvevvkesvekakrnAelngi...anveflageleevlpklskekisadkvllDPpRk 374
                    + +++ +v++ ++  G f++  Ak  +s v+++ +k+ +++ +   e ng+   +  + + g+  e+l klsk + ++d v+lDPp +
  MMETSP1061-20121228|32182_1 716 TRNCNQNTHVLNCFAHCGAFSVAAAKAGASTVSLDLNKKWLNRVEPQLEANGVpfdERHDCIFGDCFEWLEKLSKRGEKFDIVILDPPSS 805
                  557789999*******************************************84445688999*************************76 PP

>> TIGR00095  TIGR00095: RNA methyltransferase, RsmD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   5.4e-07    0.0011      52     135 ..     721     805 ..     712     816 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 5.4e-07
    TIGR00095  52 vgakvLdlfaGsgalglEALsRgakkvvfveqdkkvaktlkeNlstlk..lskeqatvlndaeralavlakketvfdiiylDPPfe 135
                  ++++vL++fa  ga+++ A   ga+  v ++ +kk  + +   l++     +++   +  d +  l++l+k+   fdi+ lDPP  
  MMETSP1061-20121228|32182_1 721 QNTHVLNCFAHCGAFSVAAAKAGAST-VSLDLNKKWLNRVEPQLEANGvpFDERHDCIFGDCFEWLEKLSKRGEKFDIVILDPPSS 805
                  689**************998777766.568*****999999988887743445556677778899*******************65 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (894 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.12s 00:00:00.54 Elapsed: 00:00:00.36
# Mc/sec: 3277.73
//
Query:       MMETSP1061-20121228|32203_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|32192_1  [L=554]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (554 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.31
# Mc/sec: 2358.77
//
Query:       MMETSP1061-20121228|32213_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|32231_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-35  119.0   0.1    6.6e-34  115.4   0.0    2.3  2  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin
    8.1e-13   45.8   0.2    2.5e-12   44.1   0.0    1.7  2  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0     0.027        56     272     333 ..      52     128 ..      31     151 .. 0.44
   2 !  115.4   0.0   3.2e-37   6.6e-34      11     280 ..     247     496 ..     238     500 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.027
    TIGR03921 272 dsvGaGvvdpvaAltee...vapeeekplsdaaapakevaepappapedetprerv.............alvgagvva 333
                    +Ga  vd  aA+ +       +++++ s++a+++++   +a++ +e+ ++   +             + +g+++++
  MMETSP1061-20121228|32231_1  52 RGLGASEVDSGAAMRQLttyYNEANSASASETASETNNFMSTAKSYAEQIKTS-TTdiattnprewtsnQYLGVATGV 128
                  45677777777777665332233333333445555555444444444222221.112344455444444222222222 PP

  == domain 2    score: 115.4 bits;  conditional E-value: 3.2e-37
    TIGR03921  11 tGagvtVAViDtGvd.rhPrLpgevaGgDlvesgdgeddcdghGTlvAglIAarpaegsGfvGvAPdakilpirqtskafedkeeksavgdletlAkairrAadsg.AkVINiSevaclsaksaadeselgaAvkyalekdvvvvAaagnegqdgsk...tvvyPAaypgVlaVgsidrs.gep.ssfslagpwvdvaApgenlvslspggdglasavgespleGtSfAaplVsgvAaLvrskfpe.ltaaqvirrleaT.arkpar.grddsvGaGvvd 280
                  tG++v+VA+iD+Gvd rhP  +++v  +  +++g      d hGT vAg +          + +APda +   r+  k+ +       +gd+ ++Ak+ir A+d +  +VIN+S   c    s +  +e+++Avkya  k+v  v aagn g++  +     ++PA+++  ++V+++ ++ g p +sfs +  +v+ +  g ++vsl+pgg g++        +GtS+Aap V g+ a + s+ p+  +  q+++ l +  a + +  g d++ GaG+v 
  MMETSP1061-20121228|32231_1 247 TGQDVRVAIIDSGVDhRHPGFHDRVRTKRWFRHGTPL-SEDDHGTHVAGTV----------HFLAPDADLFDYRVFGKDGD------FDGDV-AIAKSIRSAVDIDkCHVINLSLR-C----SYPVLPEIKKAVKYAKRKGVHMVCAAGNSGDGRPQtdeIFTFPARFDETISVAAVRKEdGLPaASFSESNSQVNFSGIGLDVVSLKPGG-GVQYM------SGTSMAAPHVTGLIACLLSNNPTkYNDYQLRQILRNKyAVDIGPkGYDKQTGAGFVT 496
                  8************************999999976555.4578******965..........458**************999......44555.79*********8758*****885.5....6788899*********************99998887777899************9866155589************************9.55555......4***********988777666654889999998876423344445*********996 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.3      0.09   1.8e+02     269     293 ..      76     100 ..      18     129 .. 0.46
   2 !   44.1   0.0   1.2e-15   2.5e-12      43     183 ..     320     463 ..     297     478 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.09
    TIGR03895 269 aeeaasvsiesaaaaekaakaaaei 293
                  +++ as++ +++++ +++ak  ae+
  MMETSP1061-20121228|32231_1  76 NSASASETASETNNFMSTAKSYAEQ 100
                  1111111111111111111111111 PP

  == domain 2    score: 44.1 bits;  conditional E-value: 1.2e-15
    TIGR03895  43 qldlaraielAveag.aaiinisagqltdtgeaeellekavklcqenniLivaaaGndg......ceClhvPaalpsvlavGAmd.adGrplefsnwGeaykeqGilApGenilgakpggetvrksGtslAtavvtgvaalLlslqlkr 183
                  ++ +a++i+ Av+ +  ++in+s     +++     ++kavk+++++ + +v aaGn g       e +  Pa    +++v A++ +dG p   + + e++ +      G ++ + kpgg+ +  sGts+A++ vtg+ a Lls +  +
  MMETSP1061-20121228|32231_1 320 DVAIAKSIRSAVDIDkCHVINLSLR--CSYPVL-PEIKKAVKYAKRKGVHMVCAAGNSGdgrpqtDEIFTFPARFDETISVAAVRkEDGLPA--ASFSESNSQVNFSGIGLDVVSLKPGGGVQYMSGTSMAAPHVTGLIACLLSNNPTK 463
                  6789*********87479***9963..344443.4579*******************87333333489***************961567775..456777777777777***********************************86544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 1726.01
//
Query:       MMETSP1061-20121228|32265_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 985.52
//
Query:       MMETSP1061-20121228|32259_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 2815.77
//
Query:       MMETSP1061-20121228|32305_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 312.61
//
Query:       MMETSP1061-20121228|32302_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 415.77
//
Query:       MMETSP1061-20121228|32315_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 290.38
//
Query:       MMETSP1061-20121228|32324_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1836.37
//
Query:       MMETSP1061-20121228|32320_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      171  (0.041687); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 633.55
//
Query:       MMETSP1061-20121228|32328_1  [L=381]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (381 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 1571.50
//
Query:       MMETSP1061-20121228|32337_1  [L=376]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (376 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       295  (0.0719161); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.32
# Mc/sec: 1550.87
//
Query:       MMETSP1061-20121228|32357_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 435.56
//
Query:       MMETSP1061-20121228|32411_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|32426_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.17s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|32436_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 516.96
//
Query:       MMETSP1061-20121228|32464_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 326.50
//
Query:       MMETSP1061-20121228|32473_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 646.75
//
Query:       MMETSP1061-20121228|32469_1  [L=1035]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        9.4    1.5  28.4       0.12    7.8  13.2    1.9  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.8  13.2     3e-05      0.12     241     409 ..     413     583 ..     404     595 .. 0.54
   2 ?   -1.2   1.3     0.016        64     657     711 ..     804     854 ..     793     865 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 3e-05
    TIGR02169 241 ekiekelaeleeelekleeeieelek.eleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelk.eeleelraeleevdkeaaelreelkelkekleklkeelnelkrel 409
                   ++  + +   e l+ ++e+i+   + ++e+ ++ l++ +++ +k  e  ++++  +++ ++  + ++  +++e  ++++d  ++ a +e+ +++++e++++le   ++++++ ++ +  ++++  +  ++  +    vd++ +el+++l++++ ++e+l  +l+e++r++
  MMETSP1061-20121228|32469_1 413 DQVLTQQQVFAERLDRVDEKIDRSTQeNIERTQAMLNNFKEENQKTQETFMNRINGDIRGMRTTMDRVLGEQRELLQKQQDQSAKFADLEKSRSEQAEKLRSLEYGANTNARNNNNNNGPMNQDTpDYINQDNNSQRRVDENGRELQQRLNQAHARKEELLGQLEEMQRQE 583
                  344444444455555555555543330344455555555555555555666666666666666666666666666666666666666666666666666666666665555555555544444431333444444455666666666666666666666666666666544 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.016
    TIGR02169 657 tGGsraersgelvsasekeklerlrerleeLereleslqselrriekrldelssk 711
                   GGs  +r+    s+s++++++r+ +  +++ r++++ q+++ r++++ + ++++
  MMETSP1061-20121228|32469_1 804 MGGSMDRRG----SQSQQQQSRRVPASQGQMGRQQQQQQEQMGRQQQQRNGATER 854
                  377765555....566677777888888888888888888888888887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1035 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.19s 00:00:00.68 Elapsed: 00:00:00.39
# Mc/sec: 3502.79
//
Query:       MMETSP1061-20121228|32484_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|32517_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 901.93
//
Query:       MMETSP1061-20121228|32543_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-11   40.5   0.9    8.8e-11   39.6   0.6    1.5  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    1.2e-07   29.7   0.0    1.2e-07   29.7   0.0    3.1  4  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   0.6   4.3e-14   8.8e-11       3      98 ..     137     236 ..     135     297 .. 0.68

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 4.3e-14
    TIGR02349   3 YeiLgvskdAseeeikkAYrklakkyHPDrnkg..ekeaeekfkeineAyevLsdeekraqYDqfghagleggagg..ggagfegfeasefgdigdifee 98 
                  Y+ Lg s + ++e++k  Y +l++  HPD n++   +++   + +in A evL+d+  r++YD+  +a+  +++ +   + g ++fe++ +  ++++ ++
  MMETSP1061-20121228|32543_1 137 YDYLGASPKDTQEQLKIRYTTLVRALHPDSNPDrdTQNSYYNLSDINAAWEVLKDPVERRKYDRSLQAKEIAEGIEtfVSMGIQAFETTAIPWMKKTADS 236
                  9*******************************7433444556789*******************777665554443222222233332222223333333 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.7   0.0   6.1e-11   1.2e-07       5      61 ..     148     203 ..     146     219 .. 0.88
   2 ?   -0.5   1.6      0.12   2.5e+02      68     132 ..     253     313 ..     239     322 .. 0.62
   3 ?   -2.2   1.1      0.41   8.4e+02     109     125 ..     373     389 ..     346     428 .. 0.52
   4 ?   -2.3   0.1      0.44   9.1e+02      28      52 ..     406     430 ..     384     465 .. 0.72

  Alignments for each domain:
  == domain 1    score: 29.7 bits;  conditional E-value: 6.1e-11
    TIGR00714   5 ekaLrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaeyllkLq 61 
                  +++L+ ry  l +++HPD s+   + + +  + +++N A++ Lkdp+ R +y  +Lq
  MMETSP1061-20121228|32543_1 148 QEQLKIRYTTLVRALHPD-SNPDRDTQNSYYNLSDINAAWEVLKDPVERRKYDRSLQ 203
                  5789**************.88889988999999*****************9977777 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.12
    TIGR00714  68 sEqksvrdvafllellklrdeleeieqakdeaaleklkkkvkkeiqsllaalvealkeqdyaaAa 132
                  +  +s  +v +l +++k +++  +     + a+  kl+k+      +++a+l +   +q++   a
  MMETSP1061-20121228|32543_1 253 EQARSAYSVFELEQQSKALEQKAN----SETARASKLEKELAALSTKTIASLEKGSRDQQLLSSA 313
                  344456666666666666666543....3345666777777777777777777777777665444 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 0.41
    TIGR00714 109 kkeiqsllaalvealke 125
                  +++  ++l++ ++a+++
  MMETSP1061-20121228|32543_1 373 EEMALQRLEEAQKAFDD 389
                  22222223333333333 PP

  == domain 4    score: -2.3 bits;  conditional E-value: 0.44
    TIGR00714  28 qeqaaalqqStelNqAykTLkdplk 52 
                   e++ a q S++l   +  ++d ++
  MMETSP1061-20121228|32543_1 406 NEERLAFQVSSKLETTLDRIRDKVR 430
                  4556677777777777777776654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1667.23
//
Query:       MMETSP1061-20121228|32600_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 314.74
//
Query:       MMETSP1061-20121228|32611_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 549.95
//
Query:       MMETSP1061-20121228|32627_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 604.10
//
Query:       MMETSP1061-20121228|32644_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.37
# Mc/sec: 2440.01
//
Query:       MMETSP1061-20121228|32653_1  [L=691]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-82  274.8   0.0    3.2e-82  274.3   0.0    1.2  1  TIGR00233 trpS: tryptophan--tRNA ligase
    8.1e-06   23.0   0.0    0.00028   17.9   0.0    2.3  2  TIGR00234 tyrS: tyrosine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00233  trpS: tryptophan--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  274.3   0.0   1.6e-85   3.2e-82       3     306 ..     360     684 ..     359     691 .] 0.92

  Alignments for each domain:
  == domain 1    score: 274.3 bits;  conditional E-value: 1.6e-85
    TIGR00233   3 krvltGiqpsG.klhlGnylgairtkveq.qeevelfiqvaDlhaitvkkltdeea......lrkaveelvadilAvGlDpekttiflqsevp.ehselavllskkvtlgelkritqfkdksqeenvsiGllsypvlqaAdiLlyqad...............lVPvgeDqkqhleltRdlaerfnkkfkkvfklPelliskffarlmglqdkKMSkSdpnsaIfLtdepkeikkKikkaatdsgretleeerekpgvpellviyellskeeeddkkleedlekeksgklly...gelKkalievlqeflkelqekreevaeeeldkilea 306
                   +++tG++ps+ ++h+G+++++++tk++q  ++v+l++q++D++++++k   d++a      + + + e ++di+A+G+D+ekt++f++ ++   ++ ++v++ k vt ++++ i++f ++s     +iG++ +p++qaA+++ ++++               l+P+++Dq++++++tRd+a+++  k   +  +P+l++ kff++l+g+++ KMS+Sd+nsaIfLtd+p++i+ Kik++a+++g+et + ++e + + e +v y++ls+ +edd++l+++ +++ sg   y   g++K +li+vlqe+++++qe+r+ ++++e++k + +
  MMETSP1061-20121228|32653_1 360 MYLYTGRGPSSsSMHIGHLIPFLFTKWLQdAFNVPLVVQMTDDEKFLFKGKYDPDAgdnlnhYASLTIENARDIIACGFDYEKTFLFSDLDYVgTMYPNIVRIWKAVTTNTVNGIFGFDGSS-----NIGKIAFPAIQAAPSFASSFPvvleepnpldtkavcLIPCAIDQDPYFRMTRDVAHKLVGKNHGLAGKPALIHCKFFPPLQGAAG-KMSSSDENSAIFLTDSPEDIERKIKEHAFSGGQETKKLQEELGANLETDVSYQWLSFLLEDDDELAAIGKDYGSGSGEYwstGKVKGKLIQVLQELVANHQERRARITDDEVRKWMAQ 684
                  589*******99*****************9******************9855555411111133334455**********************999***************************.....**********************************************************98777799*******************.**********************************************************************9999987533339******************************99987 PP

>> TIGR00234  tyrS: tyrosine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   1.4e-07   0.00028       7      66 ..     332     390 ..     326     397 .. 0.79
   2 !    2.5   0.0    0.0063        13     237     288 ..     565     612 ..     561     619 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.4e-07
    TIGR00234   7 lkelkkrgleeivseeeeelekklkkneklklylGvdPtaqslHlGhlvplkkLrdfqqa 66 
                  l+   +rg +    +  ++l +  +k  ++ ly+G  P+++s+H+Ghl+p+   + +q+a
  MMETSP1061-20121228|32653_1 332 LHRFLRRGIYFSHRD-MNALLDCIEKGLPMYLYTGRGPSSSSMHIGHLIPFLFTKWLQDA 390
                  555556666655555.67777777778999*********************999999886 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0063
    TIGR00234 237 ggavsldesspydfyqkvintpdelvkkilklftflgleeieklveekspsl 288
                   g++s++++   ++ +++ ++p+++ +ki++   + g+ e +kl+ee +++l
  MMETSP1061-20121228|32653_1 565 AGKMSSSDE---NSAIFLTDSPEDIERKIKEHAFSGGQ-ETKKLQEELGANL 612
                  689999998...999*************9987655555.9999999987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (691 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.40
# Mc/sec: 2280.11
//
Query:       MMETSP1061-20121228|32684_1  [L=735]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.4   0.0      0.047   11.3   0.0    1.5  1  TIGR03354 VI_FHA: type VI secretion system FHA domain protein


Domain annotation for each model (and alignments):
>> TIGR03354  VI_FHA: type VI secretion system FHA domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   1.1e-05     0.047     151     264 ..      77     196 ..      30     200 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.1e-05
    TIGR03354 151 prpapqaa..sldPlkaldqepasaadlddgalsaelaeevae...alpadlasidae.stlepelaplpaaqpapapqeqeqaseav.altaflrglgldlelldsqaaedvleelgrll 264
                  p +++++   s+d+ +++d  +   +d ++  ++  l+ee a    +++a ++++ a  s+ +p ++++p+++++++++   + ++ +  l++ l+g g++ ++ +sq+   ++e++gr++
  MMETSP1061-20121228|32684_1  77 PAEVEEEKknSVDANSSIDWREYLLEDSNK-KEKTILQEEFALlsrRTKARMEAFIAGcSLTVPGPEEEPSKSDRKKESTGIEVEQSTlSLQDGLSGFGIPKKMPASQRTISLTEQMGRTM 196
                  333332223355555555555555555544.233444444444655777777777777899**********999999987777666668******************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (735 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 2939.76
//
Query:       MMETSP1061-20121228|32698_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 245.12
//
Query:       MMETSP1061-20121228|32711_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1030.53
//
Query:       MMETSP1061-20121228|32715_1  [L=705]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (705 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.32
# Mc/sec: 2907.88
//
Query:       MMETSP1061-20121228|32721_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.40
# Mc/sec: 1597.07
//
Query:       MMETSP1061-20121228|32739_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.045   12.1   1.6      0.047   12.0   1.1    1.1  1  TIGR01601 PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1


Domain annotation for each model (and alignments):
>> TIGR01601  PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   1.1   1.2e-05     0.047      43      69 ..      33      59 .]      15      59 .] 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.2e-05
    TIGR01601 43 nrsnekndieskseiqLnnnnpkdded 69
                  +s+e++  ++ +e   nnnn++dd++
  MMETSP1061-20121228|32739_1 33 ATSQEDDSFGTDTEHNTNNNNDNDDDN 59
                 57889999999999999****999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1061-20121228|32743_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|32752_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1412.28
//
Query:       MMETSP1061-20121228|32756_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 785.34
//
Query:       MMETSP1061-20121228|32770_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.059    9.8   3.7       0.66    6.3   3.1    1.8  2  TIGR03662 Chlor_Arch_YYY: chlor_Arch_YYY domain


Domain annotation for each model (and alignments):
>> TIGR03662  Chlor_Arch_YYY: chlor_Arch_YYY domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   0.0    0.0032        13     309     333 ..      25      49 ..      13      62 .. 0.82
   2 ?    6.3   3.1   0.00016      0.66     399     494 ..      55     152 ..      27     166 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.0032
    TIGR03662 309 dllillllalvlGllavtNsWdfpi 333
                  d    +++a+ lG +a+tNsW++ i
  MMETSP1061-20121228|32770_1  25 DQVNTGVIAALLGGFALTNSWEMDI 49 
                  5556788999***********9865 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00016
    TIGR03662 399 lveerstllellvvfGlflllvi.lflitrlegalrekkarlvllaplaalllalslslallalllpllvlawlllrrsa.avgfelllallglglll 494
                   +   + +l++l v+G    ++   fl+++l+ ++ ++  r+++   + a l    + l +++ ++++ ++aw  l  +a a+g+ l    +g+ +++
  MMETSP1061-20121228|32770_1  55 RIDLAAYTLAILSVHGCTCSALAsAFLYRSLTQKSPRAALRWMNRHGVLAHLPWFKFMLGTFCYIASVCLVAWSTLEVNAvAQGVTLFAGSCGCLIIM 152
                  44455667899*****988766659******99999999999999999999988899****************9988776455555555566665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1137.14
//
Query:       MMETSP1061-20121228|32805_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    5.6   9.5        1.1    5.4   6.6    1.1  1  TIGR03734 PRTRC_parB: PRTRC system ParB family protein
        3.2    5.6   8.3        3.5    5.4   5.7    1.0  1  TIGR02205 septum_zipA: cell division protein ZipA


Domain annotation for each model (and alignments):
>> TIGR03734  PRTRC_parB: PRTRC system ParB family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   6.6   0.00056       1.1     332     401 ..      26      95 ..       4     100 .. 0.68

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00056
    TIGR03734 332 aaekpeaaaagadtaakeksaaekasakaakaaakkaaasseeservkeyrekvwRkvlakevaleaeks 401
                    +k ++a+a+a+ta+k k+++++ s+++ak+++ +++ + ++   v e+ +++     + + +++++++
  MMETSP1061-20121228|32805_1  26 DDSKTTKAKAKANTASKTKTKSKSKSKSNAKTNTDTDTDTKSKAGSVLELTKDLMQHNTSEHDMANPATA 95 
                  3334455555555555666556666777777888888888888888999888888888887777777665 PP

>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   5.7    0.0017       3.5      47     130 ..      16     107 ..       6     114 .] 0.66

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0017
    TIGR02205  47 ddsseelveddeveevrverveheipqpseqkepsiseavdkerkksvedeeasvp.........aqpvqqqldlpqaekvaqqtvepreaks 130
                  d++ +e +e+d++ ++ + + + ++++ ++ k  s s+  +k + +   d++ +++         +q    + d+ ++    +++ +p+ + +
  MMETSP1061-20121228|32805_1  16 DNDPSESLEEDDS-KTTKAKAKANTASKTKTKSKSKSKSNAKTNTDTDTDTKSKAGsvleltkdlMQHNTSEHDMANPATADAKQTNPDPTTT 107
                  3334677888884.5556666777777788888888999998888888888888886566665555666666666666666666666665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       336  (0.0819113); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 626.95
//
Query:       MMETSP1061-20121228|32803_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 2522.46
//
Query:       MMETSP1061-20121228|32833_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   11.7   0.0       0.16    8.5   0.0    2.1  2  TIGR02961 allantoicase: allantoicase


Domain annotation for each model (and alignments):
>> TIGR02961  allantoicase: allantoicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.0   3.9e-05      0.16     207     286 ..     197     275 ..     181     305 .. 0.75
   2 ?    0.4   0.0     0.012        47     234     254 ..     324     344 ..     318     354 .. 0.75

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 3.9e-05
    TIGR02961 207 knmgdGWetaRrrdpGndWvivrLgapgliekievDtahfkGnapdsvkleaaelese..eeeevitqsakWkellpktklq 286
                   +++d W t+    + +dW+ v+   + +i +i ++ + + G +p+++++ a ++es   +++ ++ +++++   l  ++l+
  MMETSP1061-20121228|32833_1 197 WRVADKWLTN---AHSCDWMGVECNDDKVIVAIYLEKNRLSGKIPNEIAIIANNIESLdfTDNIIHMRDNDFDAFLSLKRLK 275
                  5566666664...5789**********************************9999875114444444666676666665554 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.012
    TIGR02961 234 gliekievDtahfkGnapdsv 254
                  ++++++e++ ++f G +pd++
  MMETSP1061-20121228|32833_1 324 TKLSHLEIESNYFTGAMPDAI 344
                  566777888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.24
# Mc/sec: 2738.77
//
Query:       MMETSP1061-20121228|32852_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|32841_1  [L=170]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (170 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 1019.92
//
Query:       MMETSP1061-20121228|32844_1  [L=857]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-28   96.4  21.2    7.5e-28   95.6  14.7    1.3  1  TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family


Domain annotation for each model (and alignments):
>> TIGR00932  2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.6  14.7   1.8e-31   7.5e-28      11     270 ..     119     380 ..     108     385 .. 0.83

  Alignments for each domain:
  == domain 1    score: 95.6 bits;  conditional E-value: 1.8e-31
    TIGR00932  11 arrlripsvvgeliaGvilGpsglglisnselvnllaelGvilLlFliGLeldlerlkkllkkalgvgvlqvlvsfvllalllshllgl.klelavvigiilslsstavvvqvLkelnllktraGqlvlgalivqDlavvllLallillasv.saekekvalvll.llkvllaflllvllvkyllrpvlrltaeadrselatalsLllvlgsalladllGlsmalGAFlAGvvlseseyr.hkleeklepikygvliplFFisv 270
                  +r l++p +vge+  G+ilGp    +++n+e++ l+ elG+ilL   +G+++d++ +k +    + ++v+   ++ + +++l++ ++++ ++++ ++ g ++  +s++++++vLk  + l+t++Gq++++a++v+D++++++L+ l+ l ++   ++    +v + l+ vl   + + +l  ++ + vlr+ +e++r+++ + ++ +lvlg   +++ +  s  +G FlAG+ + +s+   h+   + + i  + l+ +FF s+
  MMETSP1061-20121228|32844_1 119 SRVLQMPCLVGEIFCGIILGPQLADVVPNAEALVLIGELGLILLVIEAGIDIDMSVMKLVGTRGMIIAVIGSFLP-IGVGILIAWAINVgDWKTIIASGSVFGPTSLGIALNVLKGGGILNTPVGQMIVAAAVVDDMIALVVLSQLEGLVGTiTVAGILIPVVSAfLFLVLGGYICVRILPNLIENYVLRQCSEHYREKVEMGIMFALVLGLMPATKYAKASYLMGSFLAGLTFCQSDALhHQFVRQFKRIL-QWLMRIFFSST 380
                  5679***************************************************99999999999999999999.6666666666665378999****************************************************99973333333333332202222223333444445555678888888888877777777888999999*********************99888***********.********864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (857 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.16s 00:00:00.56 Elapsed: 00:00:00.67
# Mc/sec: 1688.28
//
Query:       MMETSP1061-20121228|32860_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 441.88
//
Query:       MMETSP1061-20121228|32854_1  [L=1065]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.3e-288  957.8  12.8   1.9e-180  599.8   2.8    2.7  2  TIGR01517 ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   7.6e-136  451.8   5.7      4e-81  270.8   1.0    3.0  2  TIGR01522 ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
     7e-119  396.0   7.3    2.8e-78  261.6   1.2    3.1  2  TIGR01116 ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
    1.4e-86  289.2   4.4    3.8e-86  287.7   3.0    1.8  1  TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
    3.3e-83  277.5  11.6    3.5e-39  132.4   0.5    6.4  5  TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC
    3.4e-81  271.0   9.2      9e-31  104.1   0.2    4.1  4  TIGR01523 ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
    2.2e-79  265.4   8.1    5.3e-43  145.0   0.6    3.0  3  TIGR01647 ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
    1.5e-67  226.0   5.8    1.1e-26   90.8   0.3    3.1  3  TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
      1e-64  217.2  13.0    4.8e-36  122.6   1.9    3.5  4  TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase
    5.5e-60  200.8   1.4    2.2e-28   96.2   0.8    4.1  4  TIGR01657 P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
      7e-48  161.6  13.7      3e-23   80.3   1.5    4.2  3  TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase
    5.5e-43  145.2  19.1    4.4e-16   56.5   1.9    4.3  4  TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase
    8.6e-31  104.3  10.9    1.4e-17   60.5   0.3    4.7  4  TIGR01652 ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
    4.9e-21   72.3  12.4    7.3e-10   35.4   0.0    3.6  3  TIGR01497 kdpB: K+-transporting ATPase, B subunit
     0.0082   13.6   0.9       0.05   11.0   0.2    2.5  3  TIGR00099 Cof-subfamily: Cof-like hydrolase
  ------ inclusion threshold ------
      0.014   13.1   1.1       0.82    7.3   0.0    2.6  2  TIGR01487 SPP-like: SPP-like hydrolase, Archaeal


Domain annotation for each model (and alignments):
>> TIGR01517  ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  599.8   2.8  7.6e-183  1.9e-180      24     621 ..      49     701 ..      28     706 .. 0.85
   2 !  361.6   1.1  7.7e-111    2e-108     625     881 ..     746    1013 ..     743    1014 .. 0.96

  Alignments for each domain:
  == domain 1    score: 599.8 bits;  conditional E-value: 7.6e-183
    TIGR01517  24 ielkledalkvleklgeaegiakklktdlneGvssselerRekvygknelpekkeksflqlvwealsDktlilLsvaavvslvvgeekeeketgwieGvailvsvllvvlvtavnDykkelqfreLnekkeekkikviRggqeiqisiadvvvGDivslstGdvvpaDgvlisGlklkiDessltGesdpikkgkek...LlsGtkvlegsgrmlvtavGvnsvtGklltelreageeeplqlkLselasligkfGlgsavllll.vlvlryviekivedteekaktlldlfiiavtivvvavPegLPLavtlaLayavkkllkdnnlvRrLaaCetmGsataiCsDktGtLtqnvmsvvkgyigeea...vr..........nilveaivlnssae..........eekdkgkeefiGsktetalLelvkll.lkdvkek.rkeekvv......kiypfeserkkmsvvvkh.seglRlfikGaseivlkkcekkldsngeakeisekk.devedeienlasealRtislaykdelpe..kdsp...........nkglvliavvGikdPvragvreavkkcqraGitvRmvtGDnlstakaiarecgiltagelalegkefrk......dkilpklrvlaRssPlDkqlLve 621
                  + + l   l+ l++ g++eg+ + + td + G  +s+ e R+k +g+n lp  +++sf+ql+ + ++D tl++L+vaa+vsl++g   ++ e+g++eG+ail + l+v +vta+nDy+ke qfreL+  ++e  + viR g+ +++++ d+vvGD++sl+ Gd +p Dgv+++   l +Des+ltGe + i+k  e+   LlsG   + gs+r ++tavG ns++G +  +l++++ee+plq+kL+++a +ig +G+g+a+l+++ ++ ++ +++    ++    k+ ld fii+vtivvvavPegLPLavt++Lay++k++l+d+nl+R+LaaCetmG+at iCsDktGtLt+n+m+vv+g+ ++++    +          ni++ea +  s+a           +++  ++ + iGskte a++ l +   +++ ++  r+e + +      +++pf+s+rk+m+v+vk+  e++ ++ kGa+ei+lk+c+k+ld ng   +++ kk +++e  i+++a +alR i++a+++++++  kd             +k + l+++vGi+dP+r +v +a++ cqraGi vRmvtGDn++ta+aia+++gilt+g++a+ g+efrk      d++lp l+vlaRssP+Dk++Lv+
  MMETSP1061-20121228|32854_1  49 VPQTLSSNLQHLNEAGGVEGLLQLVATDRDLGAAESTIETRRKAFGSNVLPSTPRQSFWQLFVDTFDDATLQILIVAAIVSLAIGIY-DDPEVGYVEGMAILSACLIVSVVTALNDYQKETQFRELSAANDEVDVLVIRSGKFQKVPVGDLVVGDLISLEAGDSIPCDGVVVQYDGLTVDESALTGEPEDIEKDFENdpfLLSGCITVAGSTRFVATAVGPNSQWGVIKSHLEKEQEETPLQEKLDDMAAKIGYVGMGAAALTFVaMMYIKIFVDPEYLKHVSAFKHALDAFIIGVTIVVVAVPEGLPLAVTISLAYSTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVRGVFADTKdseCKkplgisakalNIILEAFACCSTARilpaapivdcQDNYDNRPQVIGSKTEGAMILLSQSEwGNNDDTDmRREAANFgkeggsRLFPFSSSRKRMTVLVKKgGENVTMYHKGAAEIILKNCTKYLDDNGSEMPMTPKKrEYFESIIQEFAEDALRCIAVAHRNDIQTiaKDISkvsvtecestlEKDMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGILTKGGTAMTGEEFRKltpaelDRVLPTLQVLARSSPEDKHTLVQ 701
                  44567777888999***********************************************************************86.679*************************************************************************************************999986543355***************************************************************983456888999999999999*****************************************************************************98765431111111212122226777777766665322222222113344567899********9877665313333333033322222222228**************98725799***********************9999986652678999****************99876422221111112222223688999**************************************************************955555568********************7 PP

  == domain 2    score: 361.6 bits;  conditional E-value: 7.7e-111
    TIGR01517  625 lgevvavtGDGtnDaPaLkladvGfamgiaGtevakeasDiilldDnfasivravlWGRavydsikkflqfqLtvnvvavilafvgalisstspLtavqlLWvnlimDtLaaLaLateePteelldRkPigrkaplisrsmwknilgqaayqlvvlfilefaGeel..........ftivfntfvllqlfnelnaRkleel.nvfeglfknaifvaivlitlavqviivefgGaalsvvslsieqWllcvllgalslilgvllrliPv 881 
                    gevv vtGDGtnD+PaLk advG++mg +Gt+vak+asDii++dD f+siv+avlWGR+v d+i+kflqfqLtvnvva++++f++al+  + pL+av +LWvnlimDt++aLaL te+P++elldR+P+ r+++lisr mw+nil q++yql  l+ l+  G++l          fti+fn+fv++q+fne+naR++ ++ +    l ++ +fv ++++t+  q +ive+gG ++++++ls+e+W++++  gals+++g  +rl+Pv
  MMETSP1061-20121228|32854_1  746 VGEVVGVTGDGTNDGPALKAADVGLSMGLSGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSALVGYDPPLNAVMMLWVNLIMDTMGALALGTEPPKQELLDRPPYTRNSSLISRPMWRNILIQSTYQLSLLVYLLNKGPSLyncedgsihhFTIIFNAFVFCQIFNEFNAREIGDVfDPIGALGQSPMFVLVIIFTVISQWVIVEYGGDFTQTTPLSMEEWMTTIGYGALSIPIGFFMRLLPV 1013
                   69***********************************************************************************************************************************************************99999987544444444559*********************87537889999**********************************************************8 PP

>> TIGR01522  ATPase-IIA2_Ca: calcium-transporting P-type ATPase, PMR1-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  270.8   1.0   1.6e-83     4e-81      10     583 ..      67     703 ..      61     707 .. 0.81
   2 !  178.6   0.1   1.2e-55     3e-53     586     810 ..     746     974 ..     733     996 .. 0.90

  Alignments for each domain:
  == domain 1    score: 270.8 bits;  conditional E-value: 1.6e-83
    TIGR01522  10 eetlskletdlenGlsssqevsrrrklhGsnelkveeeesllkkflsqfvkdplillllasavvsvllgnidd.......avsitlailivvtvgfvqeyrsekslealnklvpa.echliraGkeehvlasklvpGdlvelsvGdrvpadlriveavdlsidesnltGettpvkksseaiealaersniaymGtlvreGkgkGivvgtGsntefGavfemmqeiekpktplqksmdklGkdlslvsfivigv....ivlvGllqG..........kdwlemftisvslavaaipeGlpiivtvtlalGvlrmskkkaivrklpsvetlGsvnvicsdktGtltknhmtvtk.iyt....vdklaalslktvavekilkvgalcnnakv............kneaasllgkptdvalielle.kfgledlretvkrvae.........vpfsserkymavkvltds.kkivfvkGateqvleyctsylkkdGkteklteeqkekiqeeaaemaseGlrvlalaskt.....................ekdlvfaGllGlndpprpdvkeaveklltgGvrvimitGdseetavsiarrlGlavk..sskeGekldelddqqlsevvdkvavfaraspehklkivkal 583
                  e  l+ + td + G   ++ ++ rrk +Gsn l     +s+++ f++ f +d  + +l+ +a+vs+ +g +dd        ++i  a liv  v+ +++y+ e  +++l+    + ++ +ir+Gk ++v   +lv Gdl+ l+ Gd +p d  +v+   l +des+ltGe + ++k+ e  + l         G +   G ++ +  + G n+++G + + + e+e+  tplq+ +d++  ++ +v ++  ++    ++ + ++            k+ l+ f i+v++ v a+peGlp+ vt++la    +m + + ++r+l + et+G    icsdktGtlt+n+mtv + +++    ++  + l+++++a++ il++ a c  a++             ++  +++g+ t+ a+i l++ + g +d  + ++  a+         +pfss+rk m+v v++   + +++ kGa e +l+ ct+yl+++G + ++t +++e ++ + +e a++ lr +a+a+++                     ekd+ +  l+G+ dp r dv  a+     +G+ v m+tGd  eta +ia++ G+  k  ++ +Ge++ +l   +l+ v+++ +v+ar+spe+k  +v+ l
  MMETSP1061-20121228|32854_1  67 EGLLQLVATDRDLGAA-ESTIETRRKAFGSNVLPSTPRQSFWQLFVDTF-DDATLQILIVAAIVSLAIGIYDDpevgyveGMAILSACLIVSVVTALNDYQKETQFRELSAANDEvDVLVIRSGKFQKVPVGDLVVGDLISLEAGDSIPCDGVVVQYDGLTVDESALTGEPEDIEKDFENDPFLL-------SGCITVAGSTRFVATAVGPNSQWGVIKSHL-EKEQEETPLQEKLDDMAAKIGYVGMGAAALtfvaMMYIKIFVDpeylkhvsafKHALDAFIIGVTIVVVAVPEGLPLAVTISLAYSTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVRgVFAdtkdSECKKPLGISAKALNIILEAFACCSTARIlpaapivdcqdnYDNRPQVIGSKTEGAMILLSQsEWGNNDDTDMRREAANfgkeggsrlFPFSSSRKRMTVLVKKGGeNVTMYHKGAAEIILKNCTKYLDDNGSEMPMTPKKREYFESIIQEFAEDALRCIAVAHRNdiqtiakdiskvsvtecestlEKDMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGILTKggTAMTGEEFRKLTPAELDRVLPTLQVLARSSPEDKHTLVQRL 703
                  5566677888888877.778999**************************.88889999999***********9544443347899999*********************98765426789********************************************************999887775.......477788999***************776666.567889*********99888777766544311112334444321111112223778999*******************************************************************987355411112234568999999***********999873333333332212345689********9987652455555444333333211123444479***********998751567899************************************************9965311112222222222222222246788999**********************************************998334568*******************************999877 PP

  == domain 2    score: 178.6 bits;  conditional E-value: 1.2e-55
    TIGR01522 586 rGdvvamtGdGvndapalkladiGvamGrtGtdvakeaadmiltdddfatilsaieeGkGifnniknfitfqlstsvaalslvalatvlklenplnamqilwinilmdGppaqslGvepvdkdvlkkpprkrkdkiltkdllkkvlvsaviivvgtllvfvk.....elqdgvvtardttmtftcfvffdmfnalacrsetksvfeiGlfs.nkmflyavgasllGqllvv 810
                   G+vv +tGdG nd palk+ad+G++mG +Gtdvak+a+d+i++dd+f++i+ a+  G+ +f+ni+ f++fql+  v al++  l+++++++ plna+ +lw+n++md   a +lG ep  +++l +pp  r+ +++++ + +++l+ +   +   +++  k     + +dg +     t+ f  fvf ++fn + +r+       iG +    mf++ +  +++ q ++v
  MMETSP1061-20121228|32854_1 746 VGEVVGVTGDGTNDGPALKAADVGLSMGLSGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSALVGYDPPLNAVMMLWVNLIMDTMGALALGTEPPKQELLDRPPYTRNSSLISRPMWRNILIQSTYQLSLLVYLLNKgpslyNCEDGSIH--HFTIIFNAFVFCQIFNEFNAREIGDVFDPIGALGqSPMFVLVIIFTVISQWVIV 974
                  699***************************************************************************************************************************************************9999888888763322256688876..579******************8766555699775167*************9887 PP

>> TIGR01116  ATPase-IIA1_Ca: calcium-translocating P-type ATPase, SERCA-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.6   1.2   1.1e-80   2.8e-78       2     539 ..     111     702 ..     110     708 .. 0.78
   2 !  133.1   0.2   8.1e-42   2.1e-39     542     787 ..     746    1004 ..     734    1013 .. 0.84

  Alignments for each domain:
  == domain 1    score: 261.6 bits;  conditional E-value: 1.1e-80
    TIGR01116   2 leqfedllvrilllaavvsfvl......vaalvePlvillilvlnaivGvwqernaekaiealkelese.ealvlrdarkak....dlvpGdivelavGdkvpadvrllelkslkvdqsiltGesvsvekktesvkkekaavqdkknmlfsGtlvvaGkalgvvvrtGvnteiGkirkevkeaeeektPlkkkldefGeklskv.........ia..licilv...wvinikkfl.aiyyfkiavalavaaiPeGlPavittclalGtrkmakknalvrklPsvetlGcttvicsdktGtlttnkmsvaklvalekefkvegttyepveakikdleelakiaalcndsklavd..........kkkvekvGeateaalkvlveklglsaaknkkslksrealacnslikkkatlefsrdrksmsvlvks....nklfvkGapeellersthil.lkgsavPltekakqkilaslkelssealrclalavkee.................s....klifiGvvglkdPPreevadaiekcreaGirvivitGdnketaeaiarriGils....sftGkefeeleekk.......alvfsrvePshklklvel 539
                  ++ f+d  ++il++aa+vs+ +        ++ve + il   ++ ++v  +++ + e +   l   + e + lv+r+++ +k    dlv+Gd++ l+ Gd +p d  +++   l vd+s ltGe +++ek  e            + +l sG   vaG ++ v ++ G n++ G i+++++ +e+e+tPl++kld++ +k+  v         +a  +i i+v   ++  ++ f+ a+  f i v++ v a+PeGlP  +t  la  t++m + + l+r+l   et+G +t icsdktGtlt n+m+v++ v  +++   +    +p + + k l+ + +  a c+ +++  +          +++ + +G+ te a+  l++      ++n ++++ r+  a         ++ fs +rk m+vlvk+     +++ kGa+e +l+ +t+ l  +gs +P+t+k+++   ++++e++++alrc+a+a +++                 s    ++ +  +vg+ dP re+v dai+ c++aGi v ++tGdn eta+aia++ Gil+    ++tG+ef +l++++         v++r  P++k+ lv+ 
  MMETSP1061-20121228|32854_1 111 VDTFDDATLQILIVAAIVSLAIgiyddpEVGYVEGMAILSACLIVSVVTALNDYQKETQFRELSAANDEvDVLVIRSGKFQKvpvgDLVVGDLISLEAGDSIPCDGVVVQYDGLTVDESALTGEPEDIEKDFE-----------NDPFLLSGCITVAGSTRFVATAVGPNSQWGVIKSHLE-KEQEETPLQEKLDDMAAKIGYVgmgaaaltfVAmmYIKIFVdpeYLKHVSAFKhALDAFIIGVTIVVVAVPEGLPLAVTISLAYSTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVRGVFADTK---DSECKKPLGISAKALNIILEAFACCSTARILPAapivdcqdnyDNRPQVIGSKTEGAMILLSQSEW---GNN-DDTDMRREAANFGKEGGSRLFPFSSSRKRMTVLVKKggenVTMYHKGAAEIILKNCTKYLdDNGSEMPMTPKKREYFESIIQEFAEDALRCIAVAHRNDiqtiakdiskvsvteceStlekDMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGILTkggtAMTGEEFRKLTPAEldrvlptLQVLARSSPEDKHTLVQR 702
                  689*****************984333333579*******99999999999*********9999988766267889998887666669***************************************9999764...........2579*****************************9986.67899*********98887654211111111331133333333334455555336778999******************************************************************99887764...45566899******************9998543111112111134557799999999988876433...223.3333333333333334455789************963332579**************966268999*****************************998622222222111111111111113345678**********************************************544448**********986222222246899*****99999975 PP

  == domain 2    score: 133.1 bits;  conditional E-value: 8.1e-42
    TIGR01116  542 ldqivamtGdGvndaPalkkadiGiamG.sGtevakeasdlvladdnfativkaveeGraiynnmkqfirylissniGevvsifltaalgiea.lipvqllWvnlvtdGlPatalgfnppdkdilkkpprkedeplitgwlflrylviGvyvGlatvaal.....iwykq....kastlslsvlvviemlnalnalsedssllkippwen..kwlvaaiasslalhllilyvpllsalfgvvplslteWllvlk...vslPv 787 
                   ++++v +tGdG nd Palk ad+G++mG sGt+vak+asd+++ dd f++ivkav  Gr++++n+++f+++ ++ n+  +   fl+a++g +  l++v +lWvnl+ d + a alg +pp++++l +pp  ++ +li+  ++   l+  +y     v++l     ++  +    +  t+ +  +v  +++n +na    + +  i++      ++++ i++ ++  +++ y +      +++pls++eW++ +    +s+P+
  MMETSP1061-20121228|32854_1  746 VGEVVGVTGDGTNDGPALKAADVGLSMGlSGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSALVGYDPpLNAVMMLWVNLIMDTMGALALGTEPPKQELLDRPPYTRNSSLISRPMWRNILIQSTYQLSLLVYLLnkgpsLYNCEdgsiHHFTIIFNAFVFCQIFNEFNAREIGDVFDPIGALGQspMFVLVIIFTVISQWVIVEYGG---DFTQTTPLSMEEWMTTIGygaLSIPI 1004
                   789*************************99*************************************************************9549*******************************************9999888888888665555554222214443311113458889999************9999998898764311577777888888888777777...67799*********999522366666 PP

>> TIGR01106  ATPase-IIC_X-K: Na,H/K antiporter P-type ATPase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  287.7   3.0   1.5e-88   3.8e-86      23     814 ..      67     878 ..      51     901 .. 0.78

  Alignments for each domain:
  == domain 1    score: 287.7 bits;  conditional E-value: 1.5e-88
    TIGR01106  23 eelerkyetdlskglsearaaellardgpnaltppkttpeyvkfarqlfgglslllwigailcflaygiqaaeeeepsednlylgvvlsavvivtgvfsyyqeaksskilesfknlvpqqalvirdgeklsinaeevvvgdlvevkggdripadlriisakglkvdnssltgesepqtrspefthenpletrniaffstncvegtargivvstgdrtvlgriaslasglesgktpiaieiehfidiit....gvavflgvsffilslile..y........tfleavifligiivanvpegllatvtvcltltakrlarknclvknleavetlgstsvicsdktgtltqnrmtvah.lwfdnqiheadttedqsgvsfdkssetwkalsriatlcnravfkagqenvpvlkravagdasesallkfielalgs..vkelrerykkvve......ipfnstnkyqlsihekedasepryllvmkgaperilercssili.kgkeqpldeelkeafqnaylelgglgervlgfchlylpeeqypegfkfdvddvnfpve.nlcfvgllsmidppraavpdavgkcrsagikvimvtgdhpitakaiaksvgiisegnetv..ediaa....rln..ipveqvnkr...dakacvvhgsdlkdltseqldeilkehteivfarts....pqqkliivegcqrqgaivavtgdgvndspalkkadigvamgiagsdvskqaadmillddnfasivtgveegrlifdnlkksiaytltsnipeitpflifiivniplplgtvtilcidlgtdlvpaislayekaesdimkrkprnpk 814
                  e l +   td   g +e+ ++   +  g n l   +    +  f+  +    +l + i a++  la gi    e    e    l+  l+ v +vt +  y +e++  ++ ++ ++ v  + lvir g+  ++   ++vvgdl+ +++gd ip d  +++ +gl vd+s+ltge e      +f ++  l           +v g +r +  ++g ++  g i s     e+++tp+  +++ +   i     g a +  v+++ + + ++  y        + l+a i+ ++i+v  vpegl  +vt++l+ ++k++ + + l+++l a et+g ++ icsdktgtlt+nrmtv + ++ d +  e       s+++ +   e++++ s  a +   a +   q+n    + +v+g  +e a++ +++   g+   +++r   +   +       pf s+ k    + +k    +++  +  kga e il++c+  l  +g e p+  + +e f++   e+     r +  +h    +    +  k  v + + ++e ++c+  l+ + dp r  v da++ c+ agi v mvtgd   ta+aiak  gi+++g  ++  e+  +     l+  +p  qv  r   + k ++v+  +   l +e  +e l+ h+   fa       p  k     +    g +v vtgdg nd palk ad+g++mg++g+dv+k+a+d+i++dd f+siv  v  gr +fdn++k + + lt n+  +t  ++  +v+   pl +v +l ++l  d + a++l  e  + ++++r p  ++
  MMETSP1061-20121228|32854_1  67 EGLLQLVATDRDLGAAESTIETRRKAFGSNVLPSTPRQSFWQLFVDTFD-DATLQILIVAAIVSLAIGIYDDPEVGYVEGMAILSACLI-VSVVTALNDYQKETQFRELSAANDE-V--DVLVIRSGKFQKVPVGDLVVGDLISLEAGDSIPCDGVVVQYDGLTVDESALTGEPE--DIEKDFENDPFLL------SGCITVAGSTRFVATAVGPNSQWGVIKSHLE-KEQEETPLQEKLDDMAAKIGyvgmGAAALTFVAMMYIKIFVDpeYlkhvsafkHALDAFIIGVTIVVVAVPEGLPLAVTISLAYSTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVRgVFADTKDSECKKPLGISAKALNIILEAFACCS-TARILPAAPIVDCQDNYD-NRPQVIGSKTEGAMILLSQSEWGNndDTDMRREAANFGKeggsrlFPFSSSRKRMTVLVKKG---GENVTMYHKGAAEIILKNCTKYLDdNGSEMPMTPKKREYFESIIQEFAEDALRCIAVAHRNDIQTIAKDISKVSVTECESTLEkDMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGILTKGGTAMtgEEFRKltpaELDrvLPTLQVLARsspEDKHTLVQRLNG-GLMPETEEEWLQRHPGRDFATEKdlllPGYKEEWSRSRGGVGEVVGVTGDGTNDGPALKAADVGLSMGLSGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSALVGYDPPLNAVMMLWVNLIMDTMGALALGTEPPKQELLDRPPYTRN 878
                  5566777788888888888888888889999987777777888876655.55555666666778999*988777766666666666664.6677888888777777666555444.4..79***************************************************865..5566787765554......4556788999999999999999999987654.57888***999999877665111244544445555555555411222222222456777888899************************************************************987245566666666666666666666666664433.333334455555666665.5779********98777666666511567887666554323344479*99988655444433...33457889************999538*******************************99988877777888899988888876269****************************************************9876441155433111123222455565554122456777766554.577888899*******999976423336666666667777899*******************************************************************************999****************************************99996554 PP

>> TIGR01494  ATPase_P-type: HAD ATPase, P-type, family IC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.4   0.5   1.3e-41   3.5e-39       2     240 ..     148     417 ..     147     429 .. 0.78
   2 !   15.8   0.1   2.9e-06   0.00075     258     296 ..     504     545 ..     498     605 .. 0.85
   3 !   47.7   0.1   6.5e-16   1.7e-13     314     367 ..     606     659 ..     600     660 .. 0.92
   4 ?    2.8   0.0     0.027       6.8     362     381 ..     684     703 ..     679     706 .. 0.87
   5 !   78.5   0.1     3e-25   7.6e-23     385     474 ..     747     842 ..     733     846 .. 0.90

  Alignments for each domain:
  == domain 1    score: 132.4 bits;  conditional E-value: 1.3e-41
    TIGR01494   2 ililvllfallealakekaedalrslkdkelnskkvtvlregekeisskdlvvGDivlvkkgekvpaDgvllsgs.aevdessLtGEsnpvekk..eavf..agtinfegtlklkvs.........kiavvvktgsektplqrkldklalif.llallllallvfllvlie.............lktflkiilralillviaiPiaLpvavtialavgdkrl...ailvrslnaleelgkvdvilsDKTGTLTenkmelkkvviggeyqs 240
                  il++ l++ ++ al+++++e+++r+l+  + +    ++++++ +++++ dlvvGD++++++g+++p+Dgv+++ + + vdes+LtGE + +ek   +++f  +g+i++ g+++++++         +i++ +++ +e+tplq+kld +a  +  + +  +al+++++++i+             +k+ l ++++ ++++v+a+P++Lp+avti la+++k++   + l+r+l a+e++g+ + i+sDKTGTLTen+m++++ v ++++ s
  MMETSP1061-20121228|32854_1 148 ILSACLIVSVVTALNDYQKETQFRELSAANDEVDVLVIRSGKFQKVPVGDLVVGDLISLEAGDSIPCDGVVVQYDgLTVDESALTGEPEDIEKDfeNDPFllSGCITVAGSTRFVATavgpnsqwgVIKSHLEKEQEETPLQEKLDDMAAKIgYVGMGAAALTFVAMMYIKifvdpeylkhvsaFKHALDAFIIGVTIVVVAVPEGLPLAVTISLAYSTKQMlndQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVRGVFADTKDS 417
                  788999**********************888888888888889****************************9975389**************96224443336777777777665541111111115778999*************9986551444444555554444433111111111111167788899999***************************55558*********************************9998887655 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 2.9e-06
    TIGR01494 258 vlefeserkrmsvivkkpkgk...yvkGapevilervkklee 296
                   ++f+s+rkrm+v+vkk  ++   y kGa e+il++++k+ +
  MMETSP1061-20121228|32854_1 504 LFPFSSSRKRMTVLVKKGGENvtmYHKGAAEIILKNCTKYLD 545
                  69**************9877633378***********99855 PP

  == domain 3    score: 47.7 bits;  conditional E-value: 6.5e-16
    TIGR01494 314 keellGllaledplredvketieelkkagikvimlTGDnvetAkaiakelglfa 367
                  +  l  l++++dplredv ++i+ +++agi v m+TGDn etA+aiak+ g+++
  MMETSP1061-20121228|32854_1 606 DMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGILT 659
                  5567789********************************************975 PP

  == domain 4    score: 2.8 bits;  conditional E-value: 0.027
    TIGR01494 362 elglfarvsPeqKaeivell 381
                   l+++ar+sPe+K+++v+ l
  MMETSP1061-20121228|32854_1 684 TLQVLARSSPEDKHTLVQRL 703
                  5789*************987 PP

  == domain 5    score: 78.5 bits;  conditional E-value: 3e-25
    TIGR01494 385 gevvamiGDGvNDapALkaAdVGiais......AkaaadivllddnlslvvlllkeGrktykrikklilylliknliliilllvlsvlnllltslp 474
                  gevv ++GDG+ND pALkaAdVG++++      Ak+a+di+++dd++s++v+++ +Gr+++++i k+++++l++n+++  ++++ +++ + ++  +
  MMETSP1061-20121228|32854_1 747 GEVVGVTGDGTNDGPALKAADVGLSMGlsgtdvAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSALVGYDPPLNA 842
                  799***********************8778888**************************************************9988876555555 PP

>> TIGR01523  ATPase-IID_K-Na: potassium/sodium efflux P-type ATPase, fungal-type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   9.7e-15   2.5e-12      26     180 ..      80     242 ..      68     249 .. 0.81
   2 !   37.8   0.1   3.9e-13   9.9e-11     301     371 ..     336     406 ..     279     414 .. 0.71
   3 !   89.3   0.0   1.1e-28   2.7e-26     487     687 ..     503     703 ..     437     705 .. 0.84
   4 !  104.1   0.2   3.5e-33     9e-31     693     833 ..     749     884 ..     745     925 .. 0.84

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 9.7e-15
    TIGR01523  26 gltqeeavnrlkevgenrleddskvdakkvllrqvlnamivvlllaailsfat..td.....wiegg.visavivlnvlvglvqeykaektmdslktlas.pnahvirsskseaidskdlvpgdvvllkvgdvvpadlrlvetknfetdealltgeslpvikda 180
                  g ++  +  r k +g n l +  + +++++ +    +a + +l++aai+s+a+   d     ++eg  ++sa +++ v+   +++y+ e  +  l +        virs+k + +   dlv gd++ l +gd +p d  +v+   +  de+ ltge   + kd 
  MMETSP1061-20121228|32854_1  80 GAAESTIETRRKAFGSNVLPSTPRQSFWQLFVDTFDDATLQILIVAAIVSLAIgiYDdpevgYVEGMaILSACLIVSVVT-ALNDYQKETQFRELSAANDeVDVLVIRSGKFQKVPVGDLVVGDLISLEAGDSIPCDGVVVQYDGLTVDESALTGEPEDIEKDF 242
                  66677788999**************************************9986333423333677741456666666654.4567777766666655544144679**************************************************99999985 PP

  == domain 2    score: 37.8 bits;  conditional E-value: 3.9e-13
    TIGR01523 301 kevaiyaislalsiipeslvvvlsitmavgakvmvkrrvivrklealealgavtdicsdktgtltqgkmla 371
                   +  i  +++ +  +pe l   ++i++a  +k+m + + ++r+l a e++g  t+icsdktgtlt+ +m  
  MMETSP1061-20121228|32854_1 336 LDAFIIGVTIVVVAVPEGLPLAVTISLAYSTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLTENRMTV 406
                  233344455555668****************************************************9954 PP

  == domain 3    score: 89.3 bits;  conditional E-value: 1.1e-28
    TIGR01523 487 aeypfdsevkrmavvyedqqnetytvyakgaverilercsss...ygs..tleepdveliikqveslaaeglrvlalask....vidkd..dvnitlnrdvaesdlvflslvgiydpprteskgavkkfhragirvhmltgdfvetakaiarevgilptnlisdrdeivdsmvmtgsqfdalseeevddlkvlplviarcapqtkvkmieal 687
                  + +pf s  krm+v+ ++  +e  t+y kga e il+ c+ +   +gs  +++   +e     ++ +a++ lr +a+a +    +i kd  +v +t   ++ e d+ + slvgi dp r++   a+  + ragi v m+tgd +eta+aia++ gil                mtg +f  l+  e+d +     v+ar +p+ k  +++ l
  MMETSP1061-20121228|32854_1 503 RLFPFSSSRKRMTVLVKK-GGENVTMYHKGAAEIILKNCTKYlddNGSemPMTPKKREYFESIIQEFAEDALRCIAVAHRndiqTIAKDisKVSVTECESTLEKDMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGILTK----------GGTAMTGEEFRKLTPAELDRVLPTLQVLARSSPEDKHTLVQRL 703
                  569*********998765.56669***************986444777336788899********************97533325777633677899999*********************************************************98..........5678***************98777789*******998887655 PP

  == domain 4    score: 104.1 bits;  conditional E-value: 3.5e-33
    TIGR01523 693 fvamtgdgvndspslkqanvgiamgingsdvakeasdivlsddnfasilnaveegrrmtdniqkfv.lqllvenvaevlllvvglvfrdevgksvfplspvevlwiivvtssfpamglglekaapdlmerlphdskvgiftk 833
                   v +tgdg nd p+lk a+vg++mg  g+dvak+asdi++ dd f+si+ av  gr ++dni+kf+ +ql v+ va ++ ++  lv  d       pl  v +lw++++  ++ a+ lg e  + +l++r+p+  +  ++++
  MMETSP1061-20121228|32854_1 749 VVGVTGDGTNDGPALKAADVGLSMGLSGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLqFQLTVNVVALTITFLSALVGYDP------PLNAVMMLWVNLIMDTMGALALGTEPPKQELLDRPPYTRNSSLISR 884
                  5789*************************************************************8457777778888888888888885......9***********************************9887666554 PP

>> TIGR01647  ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.0   0.6   2.1e-45   5.3e-43       3     312 ..      82     414 ..      80     430 .. 0.84
   2 !   57.0   0.0   8.8e-19   2.3e-16     358     531 ..     504     704 ..     486     707 .. 0.87
   3 !   66.5   0.2   1.1e-21   2.9e-19     534     639 ..     747     854 ..     741     868 .. 0.90

  Alignments for each domain:
  == domain 1    score: 145.0 bits;  conditional E-value: 2.1e-45
    TIGR01647   3 sseeakkrlkkyGpneleekkesk.llkFlsflwnPlswvleiAaiiaialen.......weDfviilallllnatigfieeskAgnaveaLkksl.apkakvlRdgkwqeleakelvpGDvvalklGdivpaDvklvegdklkvDqaaltGEslpvekklgdiay..sgsvvkkGEveavvvatGvntffGkaakLveeaekes...ghlqkilskigavlivlilvlvliellvellkrkeslres.........lqfalvllvagiPialpvvlsvtlAvGakkLakkkaivkklsaiEelagvdiLCsDktGtltlnklsideelivke 312
                  +++  ++r+k +G n l+   +++ +  F+  + +    +l +Aai++ a+         +++ + il   l+ ++++ +++++ +    +L ++  +  + v+R gk+q+++  +lv GD+++l++Gd +p D  +v+ d l+vD++altGE   +ek +++ ++  sg +   G ++ v +a G n  +G   + +e+ ++e+    +l  +  kig v +  ++++ + ++ ++++   e l+++         +   + ++v+++P +lp  ++++lA  +k++ +++ ++++l+a E +   + +CsDktGtlt n++++ + ++  +
  MMETSP1061-20121228|32854_1  82 AESTIETRRKAFGSNVLPSTPRQSfWQLFVDTFDDATLQILIVAAIVSLAIGIyddpevgYVEGMAILSACLIVSVVTALNDYQKETQFRELSAANdEVDVLVIRSGKFQKVPVGDLVVGDLISLEAGDSIPCDGVVVQYDGLTVDESALTGEPEDIEKDFENDPFllSGCITVAGSTRFVATAVGPNSQWGVIKSHLEKEQEETplqEKLDDMAAKIGYVGMGAAALTFVAMMYIKIFVDPEYLKHVsafkhaldaFIIGVTIVVVAVPEGLPLAVTISLAYSTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVRGVFADT 414
                  5677899**********9886665166799999998888899999999999887788888888899999999999*********999999998876156799*********************************************************99988765589999*******************99888887775541224677788999999887777666666655555445554444454555433333467999**********************************************************988777655 PP

  == domain 2    score: 57.0 bits;  conditional E-value: 8.8e-19
    TIGR01647 358 fvpfdpvekrteatledeetgkkfkvtkGapqvildlvkekkeieee...........veekveelAerGlRaLgvava....................dekgewellgllpllDPPreDtketierakelgvevkmvtGDhlaiaketarrlglgtniltaekllkkkkedklkseeleelvekadGFAevfPeHkyeivealq 531
                    pf + +kr ++ +++   +++    kGa+++il+ +++  + + +            e+ ++e+Ae  lR+++va++                    + +++  l +l+ + DP reD  ++i  +++ g+ v+mvtGD++  a+ +a++ g+ t+  t   ++ ++ + kl+  el+ ++ + +  A   Pe k+++v++l+
  MMETSP1061-20121228|32854_1 504 LFPFSSSRKRMTVLVKKGG-ENVTMYHKGAAEIILKNCTKYLDDNGSempmtpkkreyFESIIQEFAEDALRCIAVAHRndiqtiakdiskvsvtecesTLEKDMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGILTKGGT--AMTGEEFR-KLTPAELDRVLPTLQVLARSSPEDKHTLVQRLN 704
                  5799******999999887.779999************987655544578999999*99******************999***************9988778899999*********************************************99877443..34434444.455558999999999999999999999999885 PP

  == domain 3    score: 66.5 bits;  conditional E-value: 1.1e-21
    TIGR01647 534 ghlvgmtGDGvnDaPaLkkAdvGiAva.gAtDAArsaaDivltepGlsviveAikesRkiFqRmksyviYrvaltl.rivvflallililkfklpvllvvllallnDg 639
                  g +vg+tGDG nD PaLk AdvG+ +    tD A+ a+Di++++  +s iv+A++  R +F+ +++++ +++++ +  + +++  + + ++  l++++++ + l+ D+
  MMETSP1061-20121228|32854_1 747 GEVVGVTGDGTNDGPALKAADVGLSMGlSGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVvALTITFLSALVGYDPPLNAVMMLWVNLIMDT 854
                  568*********************986378******************************************997526788899999999999*******99999885 PP

>> TIGR01524  ATPase-IIIB_Mg: magnesium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.8   0.3   4.2e-29   1.1e-26      21     361 ..      67     413 ..      49     425 .. 0.79
   2 !   72.3   0.1   1.7e-23   4.5e-21     394     598 ..     484     703 ..     467     706 .. 0.85
   3 !   64.3   0.0   4.5e-21   1.1e-18     602     726 ..     747     873 ..     736     899 .. 0.86

  Alignments for each domain:
  == domain 1    score: 90.8 bits;  conditional E-value: 4.2e-29
    TIGR01524  21 etllrkldsheeGltaae..vterlkkyGenevaeekkspalvqllrafnnpfiyvlailagvsylt........edleavvii..almvslsgllrfvqearaeraadalkkmvkntatvlrvinenieaaleevpidelvpGdviklaaGdlipadvrviaardlliaqsaltGeslpvekvaatkeakdkellelenlllmGtnvvsGraqavvlatGsstffGslakavsedreqtafdkGvksvskll.........irfmlvmvpvvllinGlskG.....dwleaalfalavavGltpemlpmivssnlakGaiklskkkvivkeldaiqnfGamdilctdktGtltqdkivlekhldvs 361
                  e ll+ l + ++ l aae  +  r+k +G n +++  +++ + +++ +f++    +l++ a vs +           +e++ i+   l+vs+ + l+ +q+    r  +a  + v   + v+r       + +++vp+ +lv Gd+i l aGd ip d  v++   l + +saltGe   +ek            +e + +ll G   v+G ++ v  a G ++ +G +   + +++e+t ++  ++ ++  +         + f+ +m   +++   + k      + l+a++  +++ v   pe lp+ v+ +la  + ++ + + ++++l a + +G    +c+dktGtlt++++++++ +   
  MMETSP1061-20121228|32854_1  67 EGLLQ-LVATDRDLGAAEstIETRRKAFGSNVLPSTPRQSFWQLFVDTFDDATLQILIVAAIVSLAIgiyddpevGYVEGMAILsaCLIVSVVTALNDYQKETQFRELSAANDEV--DVLVIR------SGKFQKVPVGDLVVGDLISLEAGDSIPCDGVVVQYDGLTVDESALTGEPEDIEK-----------DFENDPFLLSGCITVAGSTRFVATAVGPNSQWGVIKSHLEKEQEETPLQEKLDDMAAKIgyvgmgaaaLTFVAMMYIKIFVDPEYLKHvsafkHALDAFIIGVTIVVVAVPEGLPLAVTISLAYSTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVRGVFAD 413
                  55565.3334444555551156899***************************************999999888874455555541157788888888888887777777777666..477889......78899*******************************************877665...........36788899**************************999999999999888877665543311111111155655555555655566664222225688999999999*********************************************************9988765544 PP

  == domain 2    score: 72.3 bits;  conditional E-value: 1.7e-23
    TIGR01524 394 vdesiarstkarfkkvde...ipfdferrrlsvvveeaaevrrlickGaveelltvath.lreggavvalsesekeelkavteelnrqGlrvvavatkk.........lkaseadlskedeeeliieGflafldppkestkkaiaalkkngiavkvltGdnevvtariclevGidand..vllGadieelsdeelaaevekravfarltplqkerivtll 598
                   d++  r+ +a+f k +     pf  +r+r++v+v++  e+ ++  kGa e +l+ +t+ l  +g+ ++++ +++e ++++ +e+  + lr +ava ++          k+s ++ + + e+++ ++ +++  dp +e   +aia  + +gi v+++tGdn   ++ i ++ Gi +++   ++G +  +l+ +el + +   +v+ar +p +k+ +v+ l
  MMETSP1061-20121228|32854_1 484 NDDTDMRREAANFGKEGGsrlFPFSSSRKRMTVLVKKGGENVTMYHKGAAEIILKNCTKyLDDNGSEMPMTPKKREYFESIIQEFAEDALRCIAVAHRNdiqtiakdiSKVSVTECESTLEKDMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGILTKGgtAMTGEEFRKLTPAELDRVLPTLQVLARSSPEDKHTLVQRL 703
                  5666677777888777643337************************************84688999******************************98622211111123334446667799***************************************999999*******88653389********************************999987 PP

  == domain 3    score: 64.3 bits;  conditional E-value: 4.5e-21
    TIGR01524 602 GhtvGflGdGindapalrkadvGisvd.saadiakeasdiillekslmvleegvieGretfgnilkylkmtassnfgnvfsvlvasafipflpml.alhlliqnllyd.vsqlalpfdkvdkeflkkp 726
                  G +vG  GdG nd pal++advG+s+  s +d+ak+asdii+++ ++  + ++v+ Gr +f ni k+l+   + n +  +++   sa++ + p l a+ +l  nl+ d +  lal  +   +e l +p
  MMETSP1061-20121228|32854_1 747 GEVVGVTGDGTNDGPALKAADVGLSMGlSGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVA-LTITFLSALVGYDPPLnAVMMLWVNLIMDtMGALALGTEPPKQELLDRP 873
                  89***********************975789******************************************99886.5778889*****8766378888899999835678887777777777666 PP

>> TIGR01525  ATPase-IB_hvy: heavy metal translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.6   1.9   1.9e-38   4.8e-36       6     278 ..     123     418 ..     119     434 .. 0.87
   2 !   27.9   0.0   8.6e-10   2.2e-07     364     428 ..     595     659 ..     540     669 .. 0.82
   3 ?   -3.0   0.0         2   5.1e+02     428     447 ..     685     704 ..     674     706 .. 0.83
   4 !   71.9   0.4   4.1e-23     1e-20     451     535 ..     747     832 ..     731     859 .. 0.85

  Alignments for each domain:
  == domain 1    score: 122.6 bits;  conditional E-value: 1.9e-38
    TIGR01525   6 vlatlaalavslvlega.......lllvllllgelLeelakskasealsellelapeealllkeddseeevaveelqvgDivkVkpGekipvDGevieges.evDesllTGEslpvekkegde..ViaGtvnlegsleikvtkvgedstlaqivklveeaqeskakiqrladklasyfvplvlaialltflvwlalga............lk.a.ealeravavLvvacPcaLglatpvailvaigvaaknGiLikggealEklakvktvvfDKTGTLTkGkltvkdvevlkdsese 278
                  ++a++++la++++            +l   l+  ++ +l   + +++ +el++ + e  +l+   ++ ++v+v +l vgD + +++G++ip DG+v++  + +vDes+lTGE+  +ek  +++   ++G +   gs ++ +t+vg +s+   ++k   e +++++++q+ +d++a+++ ++ + +a+ltf++++ +++            +k a +a+  +v+++vva+P +L la++++++++++++ +   Li+  +a E++ +++ ++ DKTGTLT+ ++tv++  +++ ++se
  MMETSP1061-20121228|32854_1 123 IVAAIVSLAIGIYDDPEvgyvegmAILSACLIVSVVTALNDYQKETQFRELSAANDEVDVLVIRSGKFQKVPVGDLVVGDLISLEAGDSIPCDGVVVQYDGlTVDESALTGEPEDIEKDFENDpfLLSGCITVAGSTRFVATAVGPNSQWG-VIKSHLEKEQEETPLQEKLDDMAAKIGYVGMGAAALTFVAMMYIKIfvdpeylkhvsaFKhAlDAFIIGVTIVVVAVPEGLPLAVTISLAYSTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVRGVFADTKDSE 418
                  567777777777654445556666888888899999999999999999999999988777777789********************************98857**************9866543489*********************997.66777777888899***************************999889*****998876333479**********************************************************************97777655433 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 8.6e-10
    TIGR01525 364 eqgktvvlvavddellglialeDelrpeakeaiaeLkkkgievvlltGDnrsaaeavAkelgiid 428
                  ++ +  + + +d  l  l+ ++D+lr+++ +aia  +++gi v ++tGDn ++a+a+Ak+ gi++
  MMETSP1061-20121228|32854_1 595 SVTECESTLEKDMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGILT 659
                  55556666677778888999******************************************954 PP

  == domain 3    score: -3.0 bits;  conditional E-value: 2
    TIGR01525 428 devvaellPedKlakvkklq 447
                   +v a  +PedK + v++l+
  MMETSP1061-20121228|32854_1 685 LQVLARSSPEDKHTLVQRLN 704
                  6899************9986 PP

  == domain 4    score: 71.9 bits;  conditional E-value: 4.1e-23
    TIGR01525 451 gkkvamvGDGiNDApALaaAdvGiamg.sgsdvaieaADvvllrddlssvaeaidlsrktrkiikqNlvlalvynlvaiplaaggl 535
                  g++v + GDG ND pAL+aAdvG +mg sg+dva++a+D+++++d+ ss+++a+   r+++ +i++ l + l++n+va+ + ++  
  MMETSP1061-20121228|32854_1 747 GEVVGVTGDGTNDGPALKAADVGLSMGlSGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLSA 832
                  457999************************************************************************98875533 PP

>> TIGR01657  P-ATPase-V: P-type ATPase of unknown pump specificity (type V)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.3   0.0   9.8e-16   2.5e-13     127     285 ..      67     235 ..       7     242 .. 0.75
   2 !   96.2   0.8   8.5e-31   2.2e-28     402     703 ..     342     663 ..     306     668 .. 0.80
   3 !   14.2   0.0     5e-06    0.0013     756     798 ..     664     703 ..     661     705 .. 0.91
   4 !   39.8   0.0   8.7e-14   2.2e-11     800     952 ..     745     905 ..     732     919 .. 0.84

  Alignments for each domain:
  == domain 1    score: 46.3 bits;  conditional E-value: 9.8e-16
    TIGR01657 127 egdylkaagesn.GLtkgeiakrkelyGknei.eikvksfleLlveev....lkPfyvfqvfsvilWlldey...yyyallilvlsvlsivlsvkeirkqlkelrdmvaks..qsveViRekkeetiasdelvpgDivlisrleekllpcDavLlegsci.vnEsmltGEs 285
                  eg  +  a+ ++ G ++++i++r++++G+n++ + + +sf +L+v+ +    l+ + v  ++s ++ + d+    y+  ++il   +++ v  + +  ++++++r+++a++  ++v ViR++k +++   +lv gD+++++   +  +pcD v+++ + + v+Es ltGE 
  MMETSP1061-20121228|32854_1  67 EGLLQLVATDRDlGAAESTIETRRKAFGSNVLpSTPRQSFWQLFVDTFddatLQILIVAAIVSLAIGIYDDPevgYVEGMAILSACLIVSVVTALNDYQKETQFRELSAANdeVDVLVIRSGKFQKVPVGDLVVGDLISLE--AGDSIPCDGVVVQYDGLtVDESALTGEP 235
                  455555566666799****************94457889*****98762222566777788898998888642235566777776666666666677777888888877664488999***********************..99**********987544*********6 PP

  == domain 2    score: 96.2 bits;  conditional E-value: 8.5e-31
    TIGR01657 402 sldiitivvPPaLPaelsvgvnvalarLkkkgifciePeriniaGkidvvcFDKTGTLTedgld.llgvqglsnaeeflkevtedssekksetlkalatchsltkledklvGDpldlk..mleavgwtlee....edesaleesilavvrtedkt.kelsiirrfeFssalkrmsvivkteeerkkellafvKGaPEtiaellsk......etvp......sdykevlksytreGfRvlAlaskeLpkltlskaqdlsRdavEs....nleflGllvlenklkpdtkevikeLkeasirvvmitGDnllTavsVarevgivekkkt 703
                   + i+++ vP +LP++++++ +++ +++ + + +  +    ++ G+   +c DKTGTLTe+ +  ++gv    +++e  k       ++ +  l+a+a c+  + l    + D  d      + +g + e      ++s+  ++  + +r e     + +  r f+Fss+ krm v+vk+ +e+     ++ KGa E i + + k      +++p      + ++ ++++++++  R +A+a+++  ++  + ++++s  + Es    ++ +  l+ ++ +l++d  + i   ++a i v m+tGDn+ Ta  +a+++gi+ k  t
  MMETSP1061-20121228|32854_1 342 GVTIVVVAVPEGLPLAVTISLAYSTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLTENRMTvVRGVFADTKDSECKKPLGIS-AKALNIILEAFACCSTARILPAAPIVDCQDNYdnRPQVIGSKTEGamilLSQSEWGNNDDTDMRREAANfGKEGGSRLFPFSSSRKRMTVLVKKGGENV---TMYHKGAAEIILKNCTKylddngSEMPmtpkkrEYFESIIQEFAEDALRCIAVAHRNDIQTIAKDISKVSVTECEStlekDMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGILTKGGT 663
                  46799999******************************************************96268999999999855555555.59***************99999988888886411345566666556666455555555555566666666777889********************955...57***********9986443333455522222234899*******************99999999999997665551111667889999*******************************************988655 PP

  == domain 3    score: 14.2 bits;  conditional E-value: 5e-06
    TIGR01657 756 alsGkalavllekskellkklllkvkVfARvaPeqKeelvetl 798
                  a++G+ ++ l   +   l+++l+ ++V+AR +Pe+K++lv+ l
  MMETSP1061-20121228|32854_1 664 AMTGEEFRKLTPAE---LDRVLPTLQVLARSSPEDKHTLVQRL 703
                  89999999998777...***********************988 PP

  == domain 4    score: 39.8 bits;  conditional E-value: 8.7e-14
    TIGR01657 800 kldytvlmcGDGaNDcgALkqAdvGis..Lseae.AsvaapFtSklasiscVtnvireGRaaLvts..lqvFkylalysliqflsvliLylkgsklgdgQfltidllliavvalllsrskplkkLskerp...ssnllsvylllsvllqfvlvilslvllv 952
                   ++ +v+  GDG+ND  ALk+AdvG s  Ls  + A  a+  +      s +++ ++ GR+   +   +  F+  + +  ++   ++ L      l+ + +l+++l++ ++ al+l+ ++p ++L  ++p   +s+l+s  +  ++l+q +  +  lv+l 
  MMETSP1061-20121228|32854_1 745 GVGEVVGVTGDGTNDGPALKAADVGLSmgLSGTDvAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIrkFLQFQLTVNVVALTITFLSALVGYDPPLNAVMMLWVNLIMDTMGALALGTEPPKQELLDRPPytrNSSLISRPMWRNILIQSTYQLSLLVYLL 905
                  58999*********************9445666657778888999999*************9987511555666666666666667777788889*******************************9999555689*************999888888875 PP

>> TIGR01511  ATPase-IB1_Cu: copper-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.3   1.5   1.2e-25     3e-23      87     281 ..     191     408 ..     142     423 .. 0.80
   2 !   29.2   0.0   3.6e-10   9.3e-08     334     408 ..     584     657 ..     552     665 .. 0.81
   3 !   53.9   0.8   1.2e-17     3e-15     429     528 ..     748     846 ..     740     858 .. 0.86

  Alignments for each domain:
  == domain 1    score: 80.3 bits;  conditional E-value: 1.2e-25
    TIGR01511  87 kdvdveelqvgdilkvkpgekipvDGvvveGes.evdeslltGEslpvkkkvgde..viaGtvngegsllvkvtkvgedtllaqivklveeAqqskakiqrlAdkvaslfvpvviaiavl.....................tfviWllalevavtvliiaCPcalGLAiplvvlvatglaaknGvlikdgealekaaevdtvvfDKTGTLTeGklevte 281
                  ++v+v +l vgd + +++g++ip DGvvv+ ++ +vdes+ltGE+  ++k+ ++   +++G +   gs  + +t+vg ++    i + +e+ q++ +  ++l d +a++   v +  a l                     +f   l a+++ vt++++a P +l LA+ ++++ +t  + +   li+   a e++ +++ ++ DKTGTLTe +++v++
  MMETSP1061-20121228|32854_1 191 QKVPVGDLVVGDLISLEAGDSIPCDGVVVQYDGlTVDESALTGEPEDIEKDFENDpfLLSGCITVAGSTRFVATAVGPNSQWGVIKSHLEKEQEETPLQEKLDDMAAKIGY-VGMGAAALtfvammyikifvdpeylkhvsAFKHALDAFIIGVTIVVVAVPEGLPLAVTISLAYSTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVR 408
                  589**************************987648*************99866543389**********************************999988888887776522.2222222200000000101111111111144445679999****************************************************************986 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 3.6e-10
    TIGR01511 334 leeealktdekeekgttsvlvakkgelaavlaledelkpeakevieaLkkrgievvlltGDnekaakavAkelgi 408
                  +++ a ++++ + ++++s+l +k+ +l  ++ ++d l+++++++i+  +++gi v ++tGDn ++a+a+Ak+ gi
  MMETSP1061-20121228|32854_1 584 IQTIAKDISKVSVTECESTL-EKDMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGI 657
                  44444444444444555555.899999***********************************************9 PP

  == domain 3    score: 53.9 bits;  conditional E-value: 1.2e-17
    TIGR01511 429 kkvamvGDGiNDapaLaaadvgiaig.agtdvaieaadvvllnd.lkdvataielsrktlkkikqNllwalgYNviaipiAagvlvpiglllsPavaavama 528
                  ++v + GDG+ND paL aadvg+++g +gtdva++a+d+++++d  +++++a+   r ++ +i++ l + l+ Nv+a+ i       + +  +P + av+m 
  MMETSP1061-20121228|32854_1 748 EVVGVTGDGTNDGPALKAADVGLSMGlSGTDVAKNASDIIIMDDkFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTITFLS---ALVGYDPPLNAVMML 846
                  578899*******************968************9975389*******************************997543...334556777777665 PP

>> TIGR01512  ATPase-IB2_Cd: cadmium-translocating P-type ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.2   0.2   6.8e-17   1.7e-14       5     185 ..     122     316 ..     119     322 .. 0.75
   2 !   29.2   0.3   3.2e-10   8.3e-08     181     254 ..     335     408 ..     325     415 .. 0.92
   3 !   18.0   0.1   7.7e-07    0.0002     311     364 ..     604     656 ..     586     662 .. 0.86
   4 !   56.5   1.9   1.7e-18   4.4e-16     386     476 ..     750     844 ..     746     860 .. 0.81

  Alignments for each domain:
  == domain 1    score: 51.2 bits;  conditional E-value: 6.8e-17
    TIGR01512   5 mvvaalgavavge.......llegalll...llfslgetLeelaskrakealkaLlelaPdtarrle..eeVaveelkvgdvvvVkkGervPvDGevlsges.sldesalTGEsvpvekakgde..vlaGainldgvlkievtkeaedstiakivklveeaqsekaktqrlidrlaekytlvvlliallialvssl 185
                  ++vaa+ ++a+g        ++eg+++l   l+ s+ ++L+++ ++   ++l+a  +     + r    ++V+v +l vgd + +++G+ +P DG+v++  + ++desalTGE+  +ek  +++  +l+G i + g+ +  +t+   +s+   i k   e ++e +++q  +d +a+k   v + +a+l+++++  
  MMETSP1061-20121228|32854_1 122 LIVAAIVSLAIGIyddpevgYVEGMAILsacLIVSVVTALNDYQKETQFRELSAANDEVDVLVIRSGkfQKVPVGDLVVGDLISLEAGDSIPCDGVVVQYDGlTVDESALTGEPEDIEKDFENDpfLLSGCITVAGSTRFVATAVGPNSQWGVI-KSHLEKEQEETPLQEKLDDMAAKIGYVGMGAAALTFVAMMY 316
                  55666666666642222222467777754447889999999999999999999999999888877542389***************************988758***********9999765543399*********************99755.55555666666666667777777666666666665555444 PP

  == domain 2    score: 29.2 bits;  conditional E-value: 3.2e-10
    TIGR01512 181 lvssllvalvlLvvasPCaLvisvpvallsaisaaarkGilikggavlealakvktvalDKTGTLTkGklkvsd 254
                  ++  ++++++++vva P +L ++v+++l+++  +      li+  a+ e++++++ +  DKTGTLT+++++v++
  MMETSP1061-20121228|32854_1 335 ALDAFIIGVTIVVVAVPEGLPLAVTISLAYSTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLTENRMTVVR 408
                  56678899**************************************************************9986 PP

  == domain 3    score: 18.0 bits;  conditional E-value: 7.7e-07
    TIGR01512 311 aldekllglialsDevredaaeaiaeLkklgvkklvlltGDreaaaekvaeelG 364
                   +d  l +l+ +sD +red+++aia  +++g+  + ++tGD+ ++a+++a+++G
  MMETSP1061-20121228|32854_1 604 EKDMCLDSLVGISDPLREDVVDAIAVCQRAGI-FVRMVTGDNIETARAIAKQAG 656
                  55556667899********************7.669****************99 PP

  == domain 4    score: 56.5 bits;  conditional E-value: 1.7e-18
    TIGR01512 386 vamvGDGiNDapaLaaAdvgiamGasgsdvaletADvvllkddlsrlpeaiklarktrrivkqnvvlaltiilvlill....allgvlplwlavl 476
                  v + GDG ND paL+aAdvg++mG sg+dva +++D+++++d+ s++++a+  +r++  ++++ + + lt+ +v++ +    al+g  p++ av+
  MMETSP1061-20121228|32854_1 750 VGVTGDGTNDGPALKAADVGLSMGLSGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFDNIRKFLQFQLTVNVVALTItflsALVGYDPPLNAVM 844
                  5578****************************************************999999999988888877765511115555555666655 PP

>> TIGR01652  ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.1   2.2e-07   5.6e-05      56     126 ..     148     220 ..     119     227 .. 0.71
   2 !   14.3   0.1     5e-06    0.0013     347     379 ..     375     407 ..     356     421 .. 0.84
   3 !   60.5   0.3   5.6e-20   1.4e-17     515     676 ..     504     662 ..     502     681 .. 0.82
   4 !   14.2   0.1   5.6e-06    0.0014     770     860 ..     748     838 ..     742     971 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.2e-07
    TIGR01652  56 pLavvllvtaiKeaieDirrrksDke..vNnkkvevlees.akfkeikwkdlkVGdivkvkkdeeiPaDlllls 126
                   L+  l+v+++  a++D+++ ++ +e  + n +v vl  + +kf++++  dl VGd++ +++++ iP+D ++++
  MMETSP1061-20121228|32854_1 148 ILSACLIVSVV-TALNDYQKETQFRElsAANDEVDVLVIRsGKFQKVPVGDLVVGDLISLEAGDSIPCDGVVVQ 220
                  34455555544.466666665543331144555555544449***************************99875 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 5e-06
    TIGR01652 347 svrtsnlneeLGqveyifSDKTGTLTqNkmefk 379
                   +r +   e +G    i SDKTGTLT+N m+  
  MMETSP1061-20121228|32854_1 375 LIRHLAACETMGNATNICSDKTGTLTENRMTVV 407
                  5677788899********************975 PP

  == domain 3    score: 60.5 bits;  conditional E-value: 5.6e-20
    TIGR01652 515 vleFnSsrKRmsvivrlpddellLlcKGADsvifkrlse..........esekvlektkehlekyaseGlRTLviarrelseeeYeewnekyeeAstalkdreekleevaeliEkeLellgaTaiEDkLqegVpetielLaeAgikiWvLTGDkvETAinigysckLlseem 676
                  +++F+SsrKRm+v+v++  ++++++ KGA  +i+k   +           + k +e  +  ++++a++ lR + +a+r+    + ++  +            +  + e+  ++Ek++ l +  +i D L e+V ++i++ ++Agi + ++TGD +ETA++i+  + +l+++ 
  MMETSP1061-20121228|32854_1 504 LFPFSSSRKRMTVLVKKGGENVTMYHKGAAEIILKNCTKylddngsempMTPKKREYFESIIQEFAEDALRCIAVAHRN----DIQTIAKD---------ISKVSVTECESTLEKDMCLDSLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGILTKGG 662
                  79*******************************9987765554544333333455666777999*******99999884....22322222.........234457788899***************************************************999998865 PP

  == domain 4    score: 14.2 bits;  conditional E-value: 5.6e-06
    TIGR01652 770 kvtlaigdGaNDVsmiqeAdvGv..GisGkEGkqAvmasDfaig..qFrfLekLlLvHGrwsYkRisklilyffyknlilalilfwyslvnefsg 860
                  +v+   gdG+ND   +++AdvG+  G+sG+    A +asD+ i   +F+ + k +L+ Gr  +  i k +++ +  n++   i f    +  +++
  MMETSP1061-20121228|32854_1 748 EVVGVTGDGTNDGPALKAADVGLsmGLSGT--DVAKNASDIIIMddKFSSIVKAVLW-GRSVFDNIRKFLQFQLTVNVVALTITFLS-ALVGYDP 838
                  566678****************83355555..47999*****96337999*****99.*******************9877666654.4445554 PP

>> TIGR01497  kdpB: K+-transporting ATPase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   2.5   5.3e-11   1.4e-08      96     311 ..     171     400 ..     121     418 .. 0.60
   2 !    9.8   0.2   0.00016     0.041     439     485 ..     611     657 ..     564     664 .. 0.81
   3 !   35.4   0.0   2.9e-12   7.3e-10     506     568 ..     745     808 ..     731     856 .. 0.82

  Alignments for each domain:
  == domain 1    score: 31.2 bits;  conditional E-value: 5.3e-11
    TIGR01497  96 dalkktkketlakllskdgaikkvpadelkkGdvvlveaGdvipadGevie.GvasvdesaitGesapvlkesGgdfasvtGGtrivsdwlvvevtadpGesf..ldrmi.alveGaerrktpneialtvllv.....altlvfllvva......tlyplaayagvkisvsvlvallvalipttiGGllsaiGia.GmdrvarfnviatsGraveaaGdvdtlvldktGtit 311
                    l ++ ++ +  l+  +g+ +kvp  +l  Gd++ +eaGd ip+dG v++  + +vdesa+tGe   + k+  +d   ++G   +      v  ++ p   +  +   +    e +  +   +++a ++  v     alt+v ++ +        l  ++a+  +  +  + v+++v+ +p  +  l  +i +a   +++++ + +     a e+ G+   +  dktGt+t
  MMETSP1061-20121228|32854_1 171 RELSAA-NDEVDVLVIRSGKFQKVPVGDLVVGDLISLEAGDSIPCDGVVVQyDGLTVDESALTGEPEDIEKDFENDPFLLSGCITVAGSTRFVATAVGPNSQWgvIKSHLeKEQEETPLQEKLDDMAAKIGYVgmgaaALTFVAMMYIKifvdpeYLKHVSAFKHALDAFIIGVTIVVVAVPEGLP-LAVTISLAySTKQMLNDQNLIRHLAACETMGNATNICSDKTGTLT 400
                  555443.45566778889*******************************9845789***************9999876666666666666666655555543211221110112222222223334433332211111233332222210001113444555555555555556666666665543.444455552234444444444455677888888888888888877 PP

  == domain 2    score: 9.8 bits;  conditional E-value: 0.00016
    TIGR01497 439 GviylkdivksGikerfeqlrklGiktimltGdnrltaaviakeaGv 485
                   ++ + d ++  +++ ++  ++ Gi   m+tGdn  ta +iak+aG+
  MMETSP1061-20121228|32854_1 611 SLVGISDPLREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGI 657
                  456677888889999999999*************************7 PP

  == domain 3    score: 35.4 bits;  conditional E-value: 2.9e-12
    TIGR01497 506 aeGklvamtGdGtndapalaqadvgvamn.sGtqaakeaanmvdldsdptklievveiGkqlli 568
                    G +v +tGdGtnd pal  advg++m  sGt+ ak+a++++ +d + + +++ v  G+ ++ 
  MMETSP1061-20121228|32854_1 745 GVGEVVGVTGDGTNDGPALKAADVGLSMGlSGTDVAKNASDIIIMDDKFSSIVKAVLWGRSVFD 808
                  56999***********************769******************999999999987765 PP

>> TIGR00099  Cof-subfamily: Cof-like hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       5.7   1.5e+03     188     202 ..      35      49 ..      16      51 .. 0.76
   2 ?   -1.0   0.0      0.88   2.2e+02      17      55 ..     619     657 ..     612     671 .. 0.86
   3 !   11.0   0.2   0.00019      0.05     209     243 ..     752     787 ..     748     800 .. 0.76

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 5.7
    TIGR00099 188 sKgsalqslaeklgi 202
                   K++a++ l++++++
  MMETSP1061-20121228|32854_1  35 EKADAIKDLVKRINV 49 
                  699999999999986 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.88
    TIGR00099  17 ispetkealaklrekGikvvlaTGRsykevkeilkelgl 55 
                  +++ +++a+a  +  Gi v  +TG + + ++ i k+ g+
  MMETSP1061-20121228|32854_1 619 LREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQAGI 657
                  678899******************999999999988775 PP

  == domain 3    score: 11.0 bits;  conditional E-value: 0.00019
    TIGR00099 209 aiGDseNDieMleaagvgvamgna.neelkaladyv 243
                  + GD+ ND + l+aa+vg +mg + ++ +k+++d +
  MMETSP1061-20121228|32854_1 752 VTGDGTNDGPALKAADVGLSMGLSgTDVAKNASDII 787
                  68********************76145556665555 PP

>> TIGR01487  SPP-like: SPP-like hydrolase, Archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   0.0    0.0032      0.82      19      55 ..     619     655 ..     611     669 .. 0.87
   2 ?    3.6   0.2     0.043        11     165     206 ..     749     791 ..     741     800 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0032
    TIGR01487  19 islraieairklekkGikvvlvtGnevkfvealavli 55 
                  + +++++ai   ++ Gi v +vtG  ++ ++a+a+  
  MMETSP1061-20121228|32854_1 619 LREDVVDAIAVCQRAGIFVRMVTGDNIETARAIAKQA 655
                  56899**************************998754 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.043
    TIGR01487 165 evaaiGDsenDldlFrvagfkvava.nAddelKeiaDlvtene 206
                   v + GD+ nD ++ + a+ + +++   +d  K+++D++   +
  MMETSP1061-20121228|32854_1 749 VVGVTGDGTNDGPALKAADVGLSMGlSGTDVAKNASDIIIMDD 791
                  45678*******************94568999*****997665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       267  (0.0650902); expected 82.0 (0.02)
Passed bias filter:                      163  (0.0397367); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 1.22u 0.16s 00:00:01.38 Elapsed: 00:00:01.36
# Mc/sec: 1033.59
//
Query:       MMETSP1061-20121228|32878_1  [L=604]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (604 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 3188.86
//
Query:       MMETSP1061-20121228|32897_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 1479.19
//
Query:       MMETSP1061-20121228|32907_1  [L=244]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-24   81.2   3.7    1.4e-23   80.6   2.6    1.3  1  TIGR03635 S17_bact: 30S ribosomal protein S17
    7.8e-10   36.5   1.0    1.3e-09   35.9   0.7    1.3  1  TIGR03630 arch_S17P: archaeal ribosomal protein S17P


Domain annotation for each model (and alignments):
>> TIGR03635  S17_bact: 30S ribosomal protein S17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.6   2.6   6.9e-27   1.4e-23       3      71 ..     166     234 ..     164     235 .. 0.97

  Alignments for each domain:
  == domain 1    score: 80.6 bits;  conditional E-value: 6.9e-27
    TIGR03635   3 tlvGvVvsdkmdktvvVkverkvkhplYkKivkrtkkykaHDeeneakvGDvVeieetrPlSktKrwrl 71 
                  +lvG+Vvs+km+ktv V+v+r++ hp+Y+K++k t+k++aHDe++ a+ GD+V i  ++ +Sk+K++ l
  MMETSP1061-20121228|32907_1 166 SLVGKVVSTKMQKTVNVAVDRYKIHPKYRKRIKYTRKFMAHDEDEVASDGDTVLIVPSQRISKKKHFVL 234
                  689****************************************************************87 PP

>> TIGR03630  arch_S17P: archaeal ribosomal protein S17P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.9   0.7   6.2e-13   1.3e-09      30      99 ..     167     235 ..     161     238 .. 0.93

  Alignments for each domain:
  == domain 1    score: 35.9 bits;  conditional E-value: 6.2e-13
    TIGR03630  30 legkvvkkkmektvvvereylkyvkkyeryekrrskihahlPeCievkeGdkvliaetrplsktisfvvl 99 
                  l gkvv++km+ktv v  + +k ++ky++  k ++k+ ah  + + +  Gd+vli+ ++ +sk ++fv+ 
  MMETSP1061-20121228|32907_1 167 LVGKVVSTKMQKTVNVAVDRYKIHPKYRKRIKYTRKFMAHDEDEV-ASDGDTVLIVPSQRISKKKHFVLR 235
                  88**************************************99987.689******************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (244 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 1110.53
//
Query:       MMETSP1061-20121228|32921_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|32925_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|32929_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 407.97
//
Query:       MMETSP1061-20121228|32940_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1319.89
//
Query:       MMETSP1061-20121228|32934_1  [L=2292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-24   83.2 347.7    4.9e-08   29.0  46.7    8.7  8  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    1.4e-13   47.3 343.2    3.2e-06   23.0  28.0    8.4  7  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8  39.8   4.6e-10   9.4e-07     676     936 ..     245     509 ..     215     527 .. 0.46
   2 !    2.5  15.3    0.0024       4.8     242     407 ..     500     668 ..     492     679 .. 0.53
   3 !   18.7  25.5     3e-08   6.2e-05     250     482 ..     658     901 ..     639     905 .. 0.81
   4 !   18.6  22.7   3.2e-08   6.6e-05     257     481 ..     872    1097 ..     869    1101 .. 0.48
   5 !   29.0  46.7   2.4e-11   4.9e-08     677    1011 ..    1099    1446 ..    1072    1451 .. 0.87
   6 !   18.4  25.7   3.7e-08   7.6e-05     272     495 ..    1403    1631 ..    1399    1642 .. 0.61
   7 !   13.1  27.2   1.5e-06    0.0031     701     979 ..    1575    1845 ..    1570    1870 .. 0.67
   8 !    2.6  28.1    0.0022       4.6     689     975 ..    1864    2152 ..    1847    2166 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 4.6e-10
    TIGR02168 676 erkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaql.ekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelrek...laqlelrleel 936
                  + +kei+ l++ + +++++++e++  l+ ++++    e+++++ +++le++ ++l+++ +e+ + + e eq  + ++ + +++ +e e+e+e+ +e+l++++ee ++ ++e +e+++++e++++e+kal++a+++le+e++++++e++ ++++ +s ++e+  l+ e+ +l++ ++++ e ++ + ++++e+ ++  ele+++  l+ + +++++  ++++ + +++++e ++le ++++ ++ + +++e+   l++l+++le+ 
  MMETSP1061-20121228|32934_1 245 AASKEIKPLQKLVSQQAKEMEEMRLSLEVAQNKIAVQEDQMSTWKRRLESTPTELDDMLNEFTSKKVELEQEIRSMELEhQRQKSEKEKEIESVQEKLSKSNEESNRLRNEEKEVRDDLERTEQEMKALSQAYASLEEEFQKHQNELNAEKKQNASGSTEVTTLRAEISRLKNDARKADEWMSMAVDKMNEMGTANMELEQQVSMLNSQIEESRAVAERISLDDQNKAQERQNLEINLEKERALRLAAEEHlphLEDLRMELERE 509
                  3344555555555555555555555555555555555555555555555544444444444444444443333333322023334444455555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555444444444444444444444444433333333333300023333333332 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.0024
    TIGR02168 242 eeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeelee.....elaeleeeleelkeelesleaeleeaeaeleelesrleelee..eleelrsevaeleeqlaslnaelerlea 407
                  e l++el+++++    l+++++ +ee      +++++ e+++e+ q++  el+++is+ e+  +i   r e+ ++++ ele++le+++s++++l e      +++lee  +e +++++  +a++++++  l+e e+++e       ++ + ++ +e+ e   s ++e+ rle+
  MMETSP1061-20121228|32934_1 500 EDLRMELEREKNISVGLQKQIADTEE----ALSKFENIESKMESEQTKSAELEKRISDAEEAARISAGRFEDERTTRLELEKELETNKSTQDHLTEpdtfdITERLEEMRAEYEKKIAGKDAKIDALRLSLQEKEEHKECSGGliSMNGQVTKNNEIDEIRMSSQEEIYRLES 668
                  44444444444444444444444444....44556677777888888889999999999999999999999999999999999999998888876521111233333333333444444444444444444444443333222112233333333333333444444444444 PP

  == domain 3    score: 18.7 bits;  conditional E-value: 3e-08
    TIGR02168 250 eaeeeleeleaelkeleeel.....eelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelael.eeeleelkeelesleaeleeaeaeleelesrleeleeelee...lrsevaeleeqlaslnaelerleaele..qleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqka 482
                  +++ee+ +le+ ++el+ +l     + + + ++e++ee+eel+++ +++++ +++  ++ ++ +++ +ql++++ +le qlee+++k ++++   ++  ++ ++e ++el+ ++ ++ ++e+el++l++++++ +  l+e   + ++va +++ql++ ++++++le++++  +l+e++e+l+ ++e+l k+l e+e  ++ +q++++e   ++e++e + e+++e+ + l+++ + ++q+ ++a
  MMETSP1061-20121228|32934_1 658 SSQEEIYRLESVIRELKDRLgsglgTYKIEDIQERDEEIEELRAANEAAQEWMDKAVKHHQMNSAEIQQLSEDKVNLELQLEEERKKITCQNGIHSSApSNGVTEKQQELDLMSLKMIALEEELKDLKQEKDANQGLLDEygiAMDDVAVMQQQLSEYRSTISELETKVSesSLNEENEKLRLSNEDLLKRLREFEDWAQMVQTKISEIMIAKEQAERQVEEAREEIQALRDQNDSLRQNGTDA 901
                  333333333333333333331111123456789******************************************************9999876655426789999*********************99999988777762226799999*****************99722578888999999***********************************************9999999876665 PP

  == domain 4    score: 18.6 bits;  conditional E-value: 3.2e-08
    TIGR02168  257 eleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleelee.eleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeelee.leeelerleealeeleeeleeaeqalqk 481 
                   ++e++++e+ ee++ lr+++ +l+++ ++++ ++++lk+eis+le+    l++++++ +++++ l++q + l ++++  eeel++l+  +++l+++l+ ++ +++++++e+ +les++++ ++ ++ +l+s++++l  + +++++el++l a  ++le+ ++++kq   +l+++le+++++  +l  +++el++  e+ + ++   +  +  ++ e+ +++ +a+++
  MMETSP1061-20121228|32934_1  872 QAERQVEEAREEIQALRDQNDSLRQNGTDAN-DIEKLKQEISTLESVNDTLSNEKDSQKRQNQDLQAQCNSLLASSKIVEEELTALAGIKNDLEKDLAIERTSVDKLKQEISKLESASNDTQKhRYSDLQSRYDDLLASSKRNEEELTTLGAFRKDLEKDLAKEKQLSLTLSSELEDLKTRNMALLDSIDELKTNPEHqVSNSVTFTSDTIDTAGESRDQIDTAFDE 1097
                   4555555555555555555555555555443.345555555555555555555555555555555555555555555555555555555555555555555555555555555555544443313455555555555555555555555555555555555555555555555555555555555555555544433202223333333333333333333333333 PP

  == domain 5    score: 29.0 bits;  conditional E-value: 2.4e-11
    TIGR02168  677 rkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkke....lerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelk.alrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleee....iesleaeieeleeeleeleeeleellkekasl...eealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleek.veeeeeeaeeelkrleekikeLGpVNlaAieEyeelkeRyeflekqk 1011
                   ++++i+el++e+e++++++ae++++l++ e+  +e e+++++l+++l++++++l++ ++e    +++ ++++++lee+   le++l ++ e + + +++ e + +e +  +ee ++l+++i++l+++l+ ++++++ el++el++ ++++++ ee +++ e++ aale ++e le++++++eee    i++ +++ + +e++++++e+el++l++++a++   +e+ a+ +++ e+++++l e e+++++l++e+ee+r+++++l+ r+   e + ++l+ +++e + ++  e++el +k + ++ +++ e+ +r+e+  +eL +  ++A + +++ +eR + +e++ 
  MMETSP1061-20121228|32934_1 1099 QTERIQELTRELETTKAALAEANETLSSDEDVMREWEDRVAQLQSNLDDAHQQLHDHETEaleaISKWQESANALEEKCVGLEEKLRNACETEGSMDAHGEMSISEYSMLKEENASLQQKINDLETSLAgNSDNRIVELQQELKAAQDALENDEEVVQQWEEQNAALESTIESLEAELRQNEEEsndvISQWQDNCAAAEARCTTFEQELNDLKESMATQdlpKEDDATDQAAFESMADTLSEKEEQLRQLQDEAEETRASMEKLKDRCLLSEERCSHLELQIKEAVATKESEIQELRNKdMAQNDDRISESNRRIESITEELSNQEIEAKNTIQQWEERNSAMEEEN 1446
                   4567899999999999999999999999999999999999999999999988888766541111667788888999999999****************999999*********************9987256789****************************************99999998823334556777888999999***********99987333467778888999****************************************************************8877777889999999999999999*****************9999886 PP

  == domain 6    score: 18.4 bits;  conditional E-value: 3.7e-08
    TIGR02168  272 lrlekseleeeleelqkelqe....lkaeisrleqeieilkerleqlekeleel...eeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelk.elqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarles 495 
                    ++++se ++++e++++el +    +k++i++ e++   ++e+ + l+k+lee+   +++l el+s + ++ +   ++ee++eel+e++++le++l+e   + +e+ ++++++++  ++l+++ a+le++ ++  ++++ ++ +leql++r+e+  ++ ++l+++ e +e+ l+ el e  +e  +  ++le ++e+l+ + ++l++ele+ + ++ +a++e+++l a le 
  MMETSP1061-20121228|32934_1 1403 NDDRISESNRRIESITEELSNqeieAKNTIQQWEERNSAMEEENSLLRKNLEEAegkSAELLELRSIRSDDDRIIRRWEERVEELSESIAELEDQLKE---QEQEAVDAIDQWQTTCTDLETKCANLENNFQNSLETISAQNWSLEQLKSRNENYCTQMQKLKNASERVESSLSvELFEAKSEISRLAKTLEGQNENLIGQSAQLQAELEAEKGKYCEARDEIDSLTATLEE 1631
                   44444445555555555444311112333444444444444444444444444411156667778888888888889999999999999999999888...77788888888888888888888888888888888888888888888888888877777777666666655543444555555555556666666666666666666666666666666666665555443 PP

  == domain 7    score: 13.1 bits;  conditional E-value: 1.5e-06
    TIGR02168  701 elkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerlesleke.iaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkrl 979 
                   el e+++e ++l++ le  +++l     ++++l++ele+++ +  ++++++++l ++lee++ e  ++ ++ +e  +el ++ +e  e+le++ +++++++++++++ +ele+el++ ++++ ++ee l ++ ++   ++   +e+l +q ++ +++i  +e +++e++ e    ++el++ll  k  ++ +l+e r++l  + ++l+e  +++++  +++  + ++  + e + + ++ +i++l+++l e ++   +e +++e  ++ e e ++e+++ l
  MMETSP1061-20121228|32934_1 1575 ELFEAKSEISRLAKTLEGQNENLI---GQSAQLQAELEAEKGKYCEARDEIDSLTATLEEIKFESVSTMNQWTERYAELeAALKEAHEQLEEQGNEANQAISSWETKADELEKELDKAEDQILRLEEVLIDSDSDkQTSIVVAAENLVRQNRNFSHKILTNEGKLNEMKLE----QQELKHLLSLK--SQDKLEEERDRLIGVVAQLEEELREANATLQACVTDGSSDRATEFAANAIRDDIQNLRNQLIEYQQKFEDEKAAKEV-ADLEIEGLREDVAAL 1845
                   444555555555544444333333...366667777777777777777778888888888887777777777777777756667777888888888888888888888888888888888888877776665544045566778888888888888888888888888886....55555555555..34556666666666666666666666666666666666666777777777777777777777655444444444444.566777777766655 PP

  == domain 8    score: 2.6 bits;  conditional E-value: 0.0022
    TIGR02168  689 eeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleae..ieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelerelee...lreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeee 975 
                   + +e+  +  ++e+++l+k+l ++ +ele  r +++++++ +s+l+ +++  e+e+ +++++++ l++++eel++ + ++++ le     l +e +  ++ + +e+e+l++el++++ + + l+ +l++++++ a++  ++++ e+ +a+++  ++   ++++ +++++  ++ae   ++ ++ +e l+ ++++ + ++  ++e + ++++el++++eel +l++ ++   + ++    + ++l++l+++le+l+ e a lq+ + ee++ + ++++ l+++     ++a+++
  MMETSP1061-20121228|32934_1 1864 KSIEKLQKIEHAEIDDLRKSLFRALDELELTRFAERDSNETISKLRLQISMYEQEIIAAKSEVNFLSEAMEELRQTEDSKRASLEYRIGSLeNENDVVRKYQANELEDLRKELAQITMEKDLLSHQLKDTQKTNASLLLAAQNEEDGKAQQHADIHSECSKLRIENAHLLTIAAEdkAKNERRLRELLSGQAASSELDVIMERELRLSAETELQTMKEELGQLRNGKHSEMAVTSTdcfTLDELNKLRTALESLKEENAGLQAIIDEEASKSKQTIDVLTDE----CRRAQAK 2152
                   44455555667899***********************************************************************9998886778888899999************************9999999999999999988888888877666666555555554444310444444444444444444444444555666788899999999988887665554444431113578999999999999999999999999999999999888774....2333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1  36.8   8.7e-08   0.00018     227     492 ..     244     509 ..     238     514 .. 0.84
   2 !    3.0  16.1    0.0016       3.4     325     487 ..     516     678 ..     507     692 .. 0.87
   3 !   18.2  39.3   4.3e-08   8.7e-05     696    1009 ..     694    1023 ..     683    1030 .. 0.80
   4 !   23.0  28.0   1.5e-09   3.2e-06     664     944 ..    1025    1319 ..    1017    1330 .. 0.74
   5 !   12.8  33.4   1.8e-06    0.0036     242     497 ..    1334    1587 ..    1323    1591 .. 0.59
   6 !    2.8  25.3    0.0019       3.8     671     923 ..    1730    1993 ..    1720    1996 .. 0.72
   7 !    2.5  22.9    0.0022       4.6     232     502 ..    1911    2179 ..    1906    2200 .. 0.75

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 8.7e-08
    TIGR02169 227 tlllkelealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgee...eqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselere 492
                  ++ +ke++ l+k  ++  ke++e++ +le  +++i  +e+++   +++le   ++++++ +e   +++++ +++++++ e    +r+ +eke+e+e ++e+l k ++e ++l++e +e++ ++e+ ++e ++l++++++l+ee ++ ++el++++k++a    e+  l+ ++++lk+   +     +   ++ +++  +  el++++  ++++i+e  + +e +    +++ q++++l+ +lek+++   + +e+l +le+ + elere
  MMETSP1061-20121228|32934_1 244 MAASKEIKPLQKLVSQQAKEMEEMRLSLEVAQNKIAVQEDQMSTWKRRLESTPTELDDMLNEftsKKVELEQEIRSMELE---HQRQKSEKEKEIESVQEKLSKSNEESNRLRNEEKEVRDDLERTEQEMKALSQAYASLEEEFQKHQNELNAEKKQNASGSTEVTTLRAEISRLKNDARKADEWMSMAVDKMNEMGTANMELEQQVSMLNSQIEESRAVAERISLDDQNKAQERQNLEINLEKERALRLAAEEHLPHLEDLRMELERE 509
                  55667777777777777777788888888888888888888888888887777777776554222444555555555544...457888999999*********************************************************************************99999999999999999***99***********************999999999999999999999999999999999999999999988887 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0016
    TIGR02169 325 lakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikk..aeqkleqlkedlekaekelrklkeeleklekels 487
                  l+k+ a+ ++  ++ e++e ++e+e+ + ++l++++++++e  + +  + e++ ++  el +el+  k   ++l+e        ++rl e   + e+++a   a++ +++ +++e ee++e     i+   + +k +++ e + + ++e+++l++ +++l+++l 
  MMETSP1061-20121228|32934_1 516 LQKQIADTEEALSKFENIESKMESEQTKSAELEKRISDAEEAARISAGRFEDERTTRLELEKELETNKSTQDHLTEPDTFDI--TERLEEMRAEYEKKIAGKDAKIDALRLSLQEKEEHKECSGGLISMngQVTKNNEIDEIRMSSQEEIYRLESVIRELKDRLG 678
                  688889999999******************************************************9999999998654333..69999999999999999999**999999999999999998877651156678889999999***************99986 PP

  == domain 3    score: 18.2 bits;  conditional E-value: 4.3e-08
    TIGR02169  696 selrriekrldelssklsdaekkieeiekeleqleeeeeklkerleeleeklseleeel..eekkeelkeleaeieeleeklaklkealedleaelseek..ieeieeelek...leeevsriearleeieaelnkle..lekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkk......ereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeevkeeeeepe.eelslekvkkelekveeeleaLepv.NmkAieeYeevekrldelkekrekLeeErkeller 1009
                   +e+++++ + +++++ +++a k+++  ++e++ql+e++ +l+ +lee ++k+   ++ +   +  + ++e ++e++ +  k+ +l+e+l+dl++e++ ++  ++e    +++   +++++s+ ++ ++e+e ++++++   e+e l+ + ++l ++ +e+e+  ++++ +i e+ + +e+ e+++ee++ +++ L+++   L++      ++e+l++e++ le+ +++l+ e ++++++ ++l+a+ + l    + +eee+++   + +  e +l   + +++k+++e+++Le+  N      Y + + r+d+l +  ++ eeE + l  +
  MMETSP1061-20121228|32934_1  694 EEIEELRAANEAAQEWMDKAVKHHQMNSAEIQQLSEDKVNLELQLEEERKKITC-QNGIhsSAPSNGVTEKQQELDLMSLKMIALEEELKDLKQEKDANQglLDEYGIAMDDvavMQQQLSEYRSTISELETKVSESSlnEENEKLRLSNEDLLKRLREFEDWAQMVQTKISEIMIAKEQAERQVEEAREEIQALRDQNDSLRQngtdanDIEKLKQEISTLESVNDTLSNEKDSQKRQNQDLQAQCNSLLASSKIVEEELTALAGIKNdLEKDLAIERTSVDKLKQEISKLESAsNDTQKHRYSDLQSRYDDLLASSKRNEEELTTLGAF 1023
                   45566666667778889999999999**********************999974.44441145667899999********************9987665433677665555511168999999***********999833455678889999**************************************************853333338999*********************99999******9999999999998874444333202333333356799**********9834555678***********99988888887777655 PP

  == domain 4    score: 23.0 bits;  conditional E-value: 1.5e-09
    TIGR02169  664 rsgelvsasekeklerlrerleeLereleslqselrriekr.ldelssklsdaekkieeiekeleqleee.eeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseek......ieeieeelekleeevsriearleeieaelnkle.......lekelleeeiqelqeeieeleeqkk.eiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelseleeev.kee 944 
                   +  e + a+ek+ +  l+ +le+L+    +l + +++++ +  +++s+++   +  i ++ + ++q++    e + er++el ++l+ ++ +l+e++e l + e  + e e ++a+l+ +l+d  ++l++++      i + +e++++lee+   +e++l+++ +   + +        e  +l+ee + lq++i++le   + +  ++i el+++l++ +  le+ e  v++ ee+ + L++ +e leaelr+ e++ +++ ++ ++   + +  +a+  + e+el++l+e++ +++
  MMETSP1061-20121228|32934_1 1025 KDLEKDLAKEKQLSLTLSSELEDLKTRNMALLDSIDELKTNpEHQVSNSVTFTSDTIDTAGESRDQIDTAfDEMQTERIQELTRELETTKAALAEANETLSSDEDVMREWEDRVAQLQSNLDDAHQQLHDHEtealeaISKWQESANALEEKCVGLEEKLRNACETEGSMDahgemsiSEYSMLKEENASLQQKINDLETSLAgNSDNRIVELQQELKAAQDALENDEEVVQQWEEQNAALESTIESLEAELRQNEEESNDVISQWQD---NCAAAEARCTTFEQELNDLKESMaTQD 1319
                   4556667778888889999999999999999999999886526788888999999999999999999876256678999999999999999999999999999999999999999999998888887766541121116677889999999999999998865544444440001112344556666666777777776665513456788899999999999999999999999999999999999999999999888888777777...777778888888888888887653333 PP

  == domain 5    score: 12.8 bits;  conditional E-value: 1.8e-06
    TIGR02169  242 kiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeieklera.iaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekels....elerelaele 497 
                    +   l+e+ee+l +l+ e+ee ++ +e+++++    +++ ++      l++ke ++  ++ei++l+++ +a++ +++ ++++r++ + +e+++++ e+++  ++ ee +   e+ ++ l+++ ee e + ael e+        +     +e++e+l e + el+   d+l+e+ +++  ++ + +   +++e k a+le++ ++  e i+++++ leqlk   e++  +++klk+  e++e+ ls    e+++e+++l 
  MMETSP1061-20121228|32934_1 1334 SMADTLSEKEEQLRQLQDEAEETRASMEKLKDRCLLSEERCSH----LELQIKEAVATKESEIQELRNKdMAQNDDRISESNRRIESITEELSNQEIEAKNTIQQWEERNSAMEEENSLLRKNLEEAEGKSAELLELRSIRSDDDRIIRRWEERVEELSESIAELE---DQLKEQEQEAVDAIDQWQTTCTDLETKCANLENNFQNSLETISAQNWSLEQLKSRNENYCTQMQKLKNASERVESSLSvelfEAKSEISRLA 1587
                   3344444555555555555555555554444444444444443....34556666666666665555431444455555555555555555555555544443333333333333333333333444444444444444444444444555666666777777777...77888888999999999999999999999999999999999999999999999999999999999999999999866532225666666655 PP

  == domain 6    score: 2.8 bits;  conditional E-value: 0.0019
    TIGR02169  671 asekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleee...eeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeel..ekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaav....reLeeelkdLkkereelea....elrelekkkeeleaeiekkrkrlkel 923 
                     ++ kl++++ + +eL++ l+   + ++++e++ d l   + + e++++e+++ l++   +    ++++  ++++++++++l ++l e++++ ++ +a  e    +++ l+e++++l    ++ek + + ++l  +++e+  +  +a ++++ ++l +   e el + + ++ +e i +l  q+++ e+ei + k +++ l+e +eel++ +    + Le + + L++e + +++    el+ l+k+  ++ +e +   ++lk++
  MMETSP1061-20121228|32934_1 1730 LTNEGKLNEMKLEQQELKHLLSL--KSQDKLEEERDRLIGVVAQLEEELREANATLQACVTDgssDRATEFAANAIRDDIQNLRNQLIEYQQKFEDEKAAKEVADLEIEGLREDVAALLSLADHEKNPAVMKKLttKSIEKLQKIEHAEIDDLRKSLFRALDELELTRFAERDSNETISKLRLQISMYEQEIIAAKSEVNFLSEAMEELRQTEdskrASLEYRIGSLENENDVVRKyqanELEDLRKELAQITMEKDLLSHQLKDT 1993
                   56788999999999999988763..44556666666666666666666666666666654431103444456778999****************************************99999999999888762246777666667899*******99999999***9***********************99999999998888888765511115688888888888665432111144444444444444444444444444 PP

  == domain 7    score: 2.5 bits;  conditional E-value: 0.0022
    TIGR02169  232 elealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelrael.....eevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqaka 502 
                   ++   e+++ + ++e++ l e +e+l +  + +++ le +   le+ n  ++k   +e   ++++l+++++e   l++++++ ++        l  a+ e d +++++++++ e  + ++e ++l +  +e+k++ e   +el     ++ + +    re   +++++l+ +keel +l+  + +       +++       el++++ +++ l+ee   l++ i ++  k +q+ + l ++ ++ +++  +l++  +   ++++e+++++ +a  
  MMETSP1061-20121228|32934_1 1911 QISMYEQEIIAAKSEVNFLSEAMEELRQTEDSKRASLEYRIGSLENENDVVRKYQANELEDLRKELAQITMEKDLLSHQLKDTQKTNAS---LLLAAQNEEDGKAQQHADIHSECSKLRIENAHLLTIAAEDKAKNERRLRELlsgqaASSELDVIMERELRLSAETELQTMKEELGQLR--NGKH--SEMAVTSTDCFTLDELNKLRTALESLKEENAGLQAIIDEEASKSKQTIDVLTDECRRAQAKAFKLDRDTRTEIAVQSEISKMRLSAMS 2179
                   556678899999999*********************************************************99999888766554444...4444555556666666666666666666666666666666665555555551110055555555556666788888999999999988..3333..334455666677789***********************************************9**99999999999999998877633 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       640  (0.156021); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 3.68u 0.24s 00:00:03.92 Elapsed: 00:00:01.80
# Mc/sec: 1680.66
//
Query:       MMETSP1061-20121228|32946_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1921.76
//
Query:       MMETSP1061-20121228|33018_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.1   0.0       0.02   12.4   0.0    1.2  1  TIGR00296 TIGR00296: uncharacterized protein, PH0010 family


Domain annotation for each model (and alignments):
>> TIGR00296  TIGR00296: uncharacterized protein, PH0010 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   4.8e-06      0.02     137     187 ..     112     172 ..     105     181 .. 0.74

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.8e-06
    TIGR00296 137 gpkrGllLPqvav.e..ygwdke....eflanlilkaGlpp...Dnflteeievyrfegki 187
                  + ++ ++LP+v+  e  ++ +++    + l++ i kaG+ +      l++ + v+r+++ +
  MMETSP1061-20121228|33018_1 112 KSFSATFLPDVVEsEskHHSNVDeaklDLLTKAIRKAGYQGpirSGLLETSVSVVRYQSTT 172
                  567789****974232245565522336899*********9888667777*******9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1231.90
//
Query:       MMETSP1061-20121228|33007_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.30
# Mc/sec: 2542.99
//
Query:       MMETSP1061-20121228|33034_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 300.94
//
Query:       MMETSP1061-20121228|33050_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|33067_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-11   39.7   0.0    7.4e-10   36.6   0.0    1.9  1  TIGR00995 3a0901s06TIC22: chloroplast protein import component, Tic22 family
     0.0085   14.3   0.2      0.026   12.7   0.1    1.8  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR00995  3a0901s06TIC22: chloroplast protein import component, Tic22 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   3.6e-13   7.4e-10      39     259 ..      66     311 ..      57     314 .] 0.73

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 3.6e-13
    TIGR00995  39 aktLlrigatlglkptfaigtwl...kttl..qaltLspeevakiLaGvsvftvsdadnefvlisdadgeksiGllifrqedaeafLaelrk...........rk.kelks....qakvvPitLdevvklkveg.......lafrflPdPvqikaalelkaankesfdGvPvfqs.elLvvkkknkryiPvylskedieqelskfkreskavadsqvidvgsledvlkklel.sekdsawedlifivPgke 259
                   k +++ g++l + p+fa ++     kt    +   ++++ va  L  v+ ft++d ++ +  ++++d +k++G +     +a+  L+ +rk            k +++++    +a++  + Ld  + l  +        + f+  P    i  al +   +    + vP+f   ++     +     P+y+ k+++e+e  +++  +       +++v  l  vl +l      d+ + +l+f+ P ++
  MMETSP1061-20121228|33067_1  66 HKGIATAGVSLMTYPSFAQAATDaneKTEPegKEGLMTASAVAALLHPVPTFTIVDKKGVPFTVVGED-AKVTGYFFTTYKEAQRILELARKsadkaiakakaDKeEDIGAnpwiNARISTVPLDYAITLVSKSmrmsgkgVYFKMAPAEDDIDDALAMTGDDDLAEGKVPLFYYeDFKASDAEGTEKTPLYFRKNELEKEWRRLNPGQTPP----KVNVTELLSVLTELVRpGGSDDELRNLMFVSPKES 311
                  67788999999****99976543111222211334578999**********************99965.8****99988777877776555422211111111331456653333577888888887777666667777889******************666667777****975788889999***************988887665554....78888888888887541445788888888888765 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.1   1.3e-05     0.026       4      49 ..      54      98 ..      52     110 .. 0.76

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.3e-05
    TIGR02811  4 eqkadlsRRdLLkglavgaaagavaaatgrvasasaaaepsepekk 49
                 +  ++ sRR+LL + ++++a+ ++++  + + +a+ a e++epe k
  MMETSP1061-20121228|33067_1 54 TCRKNISRRELLHK-GIATAGVSLMTYPSFAQAATDANEKTEPEGK 98
                 56799*******87.7777666666666666677777788888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1381.49
//
Query:       MMETSP1061-20121228|33079_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 358.26
//
Query:       MMETSP1061-20121228|33094_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.42
# Mc/sec: 707.08
//
Query:       MMETSP1061-20121228|33112_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|33114_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 433.68
//
Query:       MMETSP1061-20121228|33105_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.30
# Mc/sec: 1913.84
//
Query:       MMETSP1061-20121228|33118_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 682.70
//
Query:       MMETSP1061-20121228|33174_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 472.38
//
Query:       MMETSP1061-20121228|33192_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 295.40
//
Query:       MMETSP1061-20121228|33182_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-27   94.1   0.0    4.8e-27   93.1   0.0    1.5  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase
    1.4e-15   55.4   0.0    2.5e-15   54.5   0.0    1.3  1  TIGR00357 TIGR00357: methionine-R-sulfoxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.0   2.3e-30   4.8e-27       2     131 ..     478     607 ..     477     616 .. 0.93

  Alignments for each domain:
  == domain 1    score: 93.1 bits;  conditional E-value: 2.3e-30
    TIGR00401   2 kitfalGCfWgveklfrkidgvektkvGylngktenPtyeevCsgdtghaevvkveydpkvvsleeLldvffevidPttanrqgnD..kGtqyrsgiyalsdedekaaeaskerlqesakykkkivteieka 131
                   + +++GCfW ve + r+++gv++t + y++g++++Pty++v  g+tghaevv+++ydp+v +   + d f  ++dPt+    g+   +  qyrs i+  s + e++a++  ++ +e  + +k++ t+i+ +
  MMETSP1061-20121228|33182_1 478 RVALGCGCFWHVEFALRRLPGVRSTMACYAGGHKTSPTYKDVSKGETGHAEVVSLVYDPEVCPNTVVFDCFLAMHDPTKVRAHGKHalNTGQYRSCIFLSSVALEQTARECLNQCRE--QLGKELSTDIRLM 607
                  6789***************************************************************************998887622567**********************9999..9999999999865 PP

>> TIGR00357  TIGR00357: methionine-R-sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   1.2e-18   2.5e-15      37     128 ..     330     422 ..     319     427 .. 0.82

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 1.2e-18
    TIGR00357  37 eeGiyvditsgeplfssedkf..dsgcGWPsftkpiseeavkyek.deslgmirtevrskradahlGhvfddGPektGkryCinsaalkfiplee 128
                    Gi+  ++ g plfss+d       + W sf++p+ + +v + + ++     r+ev ++r+ +hlGh f  GP  t   yCin++al f+p + 
  MMETSP1061-20121228|33182_1 330 PAGIFFTAIGGLPLFSSTDLSptTGSSDWLSFSRPLAKSHVVHVEpEQDSMDRRIEVVCARTRCHLGHFF--GPTGTEGYYCINASALNFVPSSS 422
                  579**************99751144567********987665555055555679****************..9*999999***********9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.33
# Mc/sec: 2815.77
//
Query:       MMETSP1061-20121228|33216_1  [L=3186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.24u 0.16s 00:00:01.40 Elapsed: 00:00:01.22
# Mc/sec: 3446.86
//
Query:       MMETSP1061-20121228|33229_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1083.70
//
Query:       MMETSP1061-20121228|33235_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-16   56.4   0.5    6.6e-16   56.3   0.3    1.0  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.3   0.3   1.6e-19   6.6e-16       1      67 [.       1      64 [.       1      66 [] 0.97

  Alignments for each domain:
  == domain 1    score: 56.3 bits;  conditional E-value: 1.6e-19
    TIGR00601  1 vkltlKtlkqqkfkidlepdetvkelKekiesekgkdayevaqqkLiyaGkiLsDdktvkeykikek 67
                 +++ +Ktl ++++++d+ep++t+ ++K+ki++++g   ++ +qq+Li+aGk L+D +t+++y+i+ +
  MMETSP1061-20121228|33235_1  1 MQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
                 8999*******************************...**************************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|33305_1  [L=511]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (511 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.15s 00:00:00.49 Elapsed: 00:00:00.40
# Mc/sec: 1686.16
//
Query:       MMETSP1061-20121228|33329_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   11.8   0.1       0.02   11.8   0.0    1.0  1  TIGR03805 beta_helix_1: parallel beta-helix repeat-containing protein


Domain annotation for each model (and alignments):
>> TIGR03805  beta_helix_1: parallel beta-helix repeat-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   4.8e-06      0.02     100     134 ..      17      51 ..       4      53 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.8e-06
    TIGR03805 100 apkssnGayGiypvestnvlvedsevrgaadaGiy 134
                    +s +G +G+  v  +nvlv+++ ++     Gi+
  MMETSP1061-20121228|33329_1  17 PGDSVDGCHGLVHVAISNVLVDEVRAIDGGVEGIF 51 
                  557889*********************99999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|33322_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1965.17
//
Query:       MMETSP1061-20121228|33325_1  [L=495]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (495 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2840.63
//
Query:       MMETSP1061-20121228|33364_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.17s 00:00:00.28 Elapsed: 00:00:00.18
# Mc/sec: 1605.87
//
Query:       MMETSP1061-20121228|33356_1  [L=485]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-07   27.9   0.0    7.2e-07   26.1   0.0    1.8  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    5.5e-07   26.8   0.0    7.3e-07   26.4   0.0    1.1  1  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit


Domain annotation for each model (and alignments):
>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   3.5e-10   7.2e-07     171     370 ..     255     463 ..     121     465 .. 0.78

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 3.5e-10
    TIGR03207 171 eegargi.sallvpmdlpgitrnr.fdcig..qraigrgsiffedvrvsadhllgdegkgfvqvmqgfdfsraliglqvlavaraaldetweyvaereafgkklsafqgvsfpladletqveaarllclrtlwlkdhg..lphtsea..amckwwapklaydvihqcllshghggydrg.dleqrlrdvlglqigdgtaqimktiiare 370
                  + + +g  + +lvp+  p +   r +  +g  + + g   + +e v + ++hl+g  g gf      +   r    ++ +++a+ + +   e  ++r++fgk l++   v   +ad    ++ arll l +    d     p  +    +  k   p l+ +vi + l +hg  g  ++  l   +  +  l+i dg  ++ +  +ar 
  MMETSP1061-20121228|33356_1 255 NTNLHGQhTIVLVPLPNPKVKLIRpLKVFGydDAPFGHAEVGLESVPLRSEHLIGGLGSGFKVSQARLGPGRIHHCMRSIGLAQRCYELMLERSTQRKTFGKFLCQHGSVQKDIADSFHDLQQARLLTLDCAHRMDVSptGPRGARQyiSSIKVAVPALCLKVIDRALQVHGGLGVCQDtILASAWAGMRTLRIADGPDEVHRRSVARM 463
                  444455425689999999887554344444226799*************************877778999*********************************************************9999988886411466665411567999*****************9999998567888999999******999999888885 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   3.6e-10   7.3e-07     206     372 ..     292     460 ..     272     464 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 3.6e-10
    TIGR03203 206 aaditltgvevgadaaigdpenaleliervvddarvalcaeavglmdeslkttveyiktrkqfgvaigsfqvlqhraadmfvaveqarsmalfatmaadfddaker..anaiaaakvqigkslkfvgqqsiqlhggigmtmeakighyfkrltmiektfgdtdyhlarv 372
                   a++ l  v + ++  ig    ++++ ++ +   r+  c  ++gl +   +  +e    rk fg  +    ++q+  ad f   +qar ++l ++   d   +  r   + i++ kv +      v ++++q+hgg+g+  ++ +   +  +  +  + g  + h++ v
  MMETSP1061-20121228|33356_1 292 HAEVGLESVPLRSEHLIGGLGSGFKVSQARLGPGRIHHCMRSIGLAQRCYELMLERSTQRKTFGKFLCQHGSVQKDIADSFHDLQQARLLTLDCAHRMDVSPTGPRgaRQYISSIKVAVPALCLKVIDRALQVHGGLGVCQDTILASAWAGMRTLRIADGPDEVHRRSV 460
                  578888899999999999999999999999999***********************************************************99988888776555115789*******998888999***********998887777777666666666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (485 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1882.79
//
Query:       MMETSP1061-20121228|33374_1  [L=934]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (934 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       300  (0.0731351); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.69u 0.16s 00:00:00.85 Elapsed: 00:00:00.51
# Mc/sec: 2417.21
//
Query:       MMETSP1061-20121228|33387_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2397.80
//
Query:       MMETSP1061-20121228|33385_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 290.38
//
Query:       MMETSP1061-20121228|33384_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-07   25.9   1.2    4.7e-07   25.7   0.8    1.1  1  TIGR01405 polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type
     0.0092   12.6   3.8      0.013   12.0   1.5    1.8  2  TIGR02987 met_A_Alw26: type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family


Domain annotation for each model (and alignments):
>> TIGR01405  polC_Gram_pos: DNA polymerase III, alpha subunit, Gram-positive type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.8   2.3e-10   4.7e-07     146     356 ..     172     379 ..     105     385 .. 0.77

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.3e-10
    TIGR01405 146 qafPelyklakkag.lkviyGleaelvedkvpivlnekdqklkdatyvvfDiettGlspkldeiielaavkvkngkiiekfelfikpeeklsekvteltgitdemle...nakeleevleklkeflkdavlvahnasfDlgflktkfekvnleelenpviDtLelaralnpeyksyrLgeiakk.leve..lee.ahradyDaealakvfkvlveelke 356
                  + fP++++l k+++ +  i   e++l +dk + + ++       a+yv +D e  G+ +  ++   la v + + ++   +++f+++  +++++ t++ g+t ++++   na+ ++e  +k+ ++lkd++lv h ++ D++ l t+  k ++ ++ +       + r  n +++  +L  ++k+ l+ +  ++e  h + +Da a+ ++f+v+ ++ ++
  MMETSP1061-20121228|33384_1 172 NQFPSIKELLKQKQqIEEIQKEETKL-QDKLNAIPEAV-----RAKYVALDCEMVGIGTDGKK-SALARVSIVDWNLQVVLDTFVQVPMRVTDFRTHVSGVTPKHIKsqnNAMPVKECRDKVAKILKDKILVGHALKNDFKALMTSHPKDMIRDTAKY----RPFQRYGNGKWRPRKLRDLVKEnLKGKdgFQEgEHDSVQDAVATMELFQVVFSQWEK 379
                  46788887765443377777666655.44444444444.....467*********99877655.4567776666666677899**********************97333678899**************************9999999888877664....367888888999999988876413322113337899999999999999988877655 PP

>> TIGR02987  met_A_Alw26: type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   1.5   6.5e-06     0.013     201     293 ..     118     213 ..      99     217 .. 0.81
   2 ?   -0.6   0.0     0.045        93     268     296 ..     263     291 ..     254     305 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.5e-06
    TIGR02987 201 laDktsekLRkyilen.skinsIkyfeeeaklfsgvdqalttillr.Skekkaeliv.vdkelsekekqitevdlekikslskviaiskgsekeal 293
                  ++ k ++k Rk    + ++ ++I+y e++   ++ v+q  +  +l+ Sk+k+ + ++ + kel ++++qi+e++ e+ k ++k +ai++ + ++++
  MMETSP1061-20121228|33384_1 118 ISSKDAKKFRKDARREiRQSKKINYNEDDYDEIDFVTQEYMPSILQpSKKKRKQNQFpSIKELLKQKQQIEEIQKEETKLQDKLNAIPEAVRAKYV 213
                  45666777777665541445789************************998887777625699**************************99888776 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.045
    TIGR02987 268 tevdlekikslskviaiskgsekealilk 296
                    v  ++iks+++ ++++++ +k+a+ilk
  MMETSP1061-20121228|33384_1 263 SGVTPKHIKSQNNAMPVKECRDKVAKILK 291
                  5567789****************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       321  (0.0782545); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1886.96
//
Query:       MMETSP1061-20121228|33386_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-09   34.5   0.0    2.3e-09   33.5   0.0    1.4  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
     0.0004   17.7   0.0     0.0029   15.0   0.0    2.2  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0028   15.3   0.1        0.2    9.2   0.0    2.3  2  TIGR02114 coaB_strep: phosphopantothenate--cysteine ligase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   1.7e-12   2.3e-09      17     119 ..      62     165 ..      51     169 .. 0.81
   2 ?   -3.6   0.0      0.27   3.7e+02     144     159 ..     332     347 ..     321     359 .. 0.72

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 1.7e-12
    TIGR03903  17 eeerlvaRFrReialCarLshPnivaLlDsGeaedgll.FavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadves 119
                  +ee+     +Rei++  +L+hPn+++L+ +     g        +  G  l+ v+   Ga+       +    + a++  h +Gv+hRD+kP n+++ +++ ++
  MMETSP1061-20121228|33386_1  62 KEEKGKVYAQREISILSELKHPNVIRLIREFPVYKGTSrLVALQLARGPNLQRVVSKRGAIGLSLCRLISRDLVAAVSYLHGRGVLHRDIKPTNLILENTEIRP 165
                  4566666679******************99877665431445799****************987665556678899*********************9988776 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.27
    TIGR03903 144 trttevlGsPaYaaPe 159
                   r+   lG+ aYaaPe
  MMETSP1061-20121228|33386_1 332 VRSMSALGTKAYAAPE 347
                  5677889********9 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   2.1e-06    0.0029      73     127 ..     101     162 ..      70     168 .. 0.79
   2 ?   -0.6   0.0      0.12   1.6e+02     125     140 ..     192     207 ..     175     219 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.1e-06
    TIGR03724  73 kivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivkddk 127
                   + ++  +g +l+ +++++          + +++  +v+ lH  g++h D+ ++N+i+++++
  MMETSP1061-20121228|33386_1 101 LVALQLARGPNLQRVVSKRGAiglslcrLISRDLVAAVSYLHGRGVLHRDIKPTNLILENTE 162
                  456778889999999999877888666556677888999*******************8876 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.12
    TIGR03724 125 ddklyliDfGLgkksk 140
                  + k++l+DfG ++  +
  MMETSP1061-20121228|33386_1 192 KWKVMLVDFGFARALD 207
                  5689*******98755 PP

>> TIGR02114  coaB_strep: phosphopantothenate--cysteine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0074        10     115     148 ..      59      92 ..      40     108 .. 0.83
   2 !    9.2   0.0   0.00014       0.2      44      92 ..     336     384 ..     324     417 .. 0.89

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0074
    TIGR02114 115 lskenteakissesdvqvlflkktPkvislvkek 148
                  ++++++++k+ ++ +  +l   k P vi+l++e 
  MMETSP1061-20121228|33386_1  59 IEIKEEKGKVYAQREISILSELKHPNVIRLIREF 92 
                  56788999************************85 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00014
    TIGR02114  44 tlvttkkalkPeqqkdlsikeietvkdllatlkelvkefdilihsmavs 92 
                  + + tk    Pe ++dl+ k ie+ ++  a+l e v+++ +++ + +v 
  MMETSP1061-20121228|33386_1 336 SALGTKAYAAPEIKHDLRNKTIEDQTKTNAALTECVADYGMIVDAYSVG 384
                  557899999**********************************999885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.31
# Mc/sec: 2256.59
//
Query:       MMETSP1061-20121228|33389_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-07   27.3   0.7      0.019   12.0   0.0    3.8  4  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family


Domain annotation for each model (and alignments):
>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   4.5e-06     0.019      57     126 ..     348     418 ..     335     424 .. 0.71
   2 !    4.1   0.0    0.0011       4.5      42     128 ..     387     484 ..     383     500 .. 0.72
   3 !    4.7   0.0   0.00074         3      63     133 ..     474     541 ..     460     555 .. 0.65
   4 !    6.1   0.0   0.00027       1.1      54      99 ..     588     638 ..     569     681 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 4.5e-06
    TIGR03547  57 avaavvdgklyvFgGvgkeesesslqvlddvykydpkk.nsWekletrsPvgllGasa.veleegkililGG 126
                  +++ v++g++ v+gG   +  e+++ +l+dv++ydpk+  sW+k       +   ++a +    ++i+ +GG
  MMETSP1061-20121228|33389_1 348 TMTKVANGQILVYGGQSFD-AEGNPVILSDVHVYDPKNgGSWHKPINCRGEARQWHTAtYIPGRQQIIAFGG 418
                  45678899*******9999.99**************973589885444444444343303344556666666 PP

  == domain 2    score: 4.1 bits;  conditional E-value: 0.0011
    TIGR03547  42 gWkkiaefpgaareqavaavvdg..klyvFgGvg.....keesesslqvlddv.ykydpkknsWe..kletrsPvgllGasave.leegkililGGvn 128
                   W+k  +  g ar+  +a+ + g  ++ +FgG       ++  +++ ++ +d+  + d++   W   + +   P+g +G++a+   + ++++++GGv 
  MMETSP1061-20121228|33389_1 387 SWHKPINCRGEARQWHTATYIPGrqQIIAFGGETidpikRKGAKKEKIITSDTlRVLDTEIMLWYppAASGDVPTGRSGHTATFfPSTNELILFGGVR 484
                  69999999999998877777754227999***7522221344556666666651678*******733567789*******9865157789999***96 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.00074
    TIGR03547  63 dgklyvFgGvgkeesesslqvlddvykydpkknsWe..kletrsPvgllGasaveleegkililGGvnke.iFd 133
                   ++l +FgGv  +      + l++v   d +++ W+  ++  ++P   + +sa+ +  +k++++GG nk   F+
  MMETSP1061-20121228|33389_1 474 TNELILFGGVRGS------KWLNTVSILDVTRWIWTtpNIVGTAPKPRSYHSATAVGAQKLVVFGGNNKTsCFN 541
                  5666666666555......4455666666777777622466777777777888888888888888888751455 PP

  == domain 4    score: 6.1 bits;  conditional E-value: 0.00027
    TIGR03547  54 reqavaavvdg..klyvFgGvgkeese...sslqvlddvykydpkknsWek 99 
                  r + +a+++++   + v+gG + +e++   ++ ++++ +y  d+++++W+k
  MMETSP1061-20121228|33389_1 588 RTGHTATLLEDgkTIMVYGGWDPNEEDeltGEDNIFKGSYLLDTQEWTWKK 638
                  5555555554322699****99887541115679***************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.37
# Mc/sec: 2522.06
//
Query:       MMETSP1061-20121228|33391_1  [L=301]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (301 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1528.03
//
Query:       MMETSP1061-20121228|33388_1  [L=941]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (941 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.31
# Mc/sec: 4006.51
//
Query:       MMETSP1061-20121228|33390_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-22   75.1   0.8    1.7e-21   74.4   0.6    1.4  1  TIGR00061 L21: ribosomal protein L21
  ------ inclusion threshold ------
        8.7    1.6  11.4         11    1.3   7.9    1.1  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00061  L21: ribosomal protein L21
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.6   8.1e-25   1.7e-21       1     100 [.     162     265 ..     162     266 .. 0.93

  Alignments for each domain:
  == domain 1    score: 74.4 bits;  conditional E-value: 8.1e-25
    TIGR00061   1 yAivkiggkqykveegetvkiekldaeegeev....eldkvLlvkkgdevkiGkPyvegakveaevekegrgkKvkvvkyrrrKksrkkqGhRqeytkvkvkki 100
                  +A+++  g q+kv+ ++++ ++kl+  e+ ++    +l++vLlv   +   +G P v ga+v   ve+  ++kKv+++k+rrrK+s++k+G+R+++t ++v +i
  MMETSP1061-20121228|33390_1 162 FAVLELAGSQHKVTTDDLLVVNKLKPVEEYKIgsvhTLKDVLLVGSSHLTMVGMPHVTGAEVDVMVEEITQDKKVIIFKKRRRKHSQRKNGYRRDLTLLRVLDI 265
                  79**********************99887765444489*************************************************************99876 PP

>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.3   7.9    0.0052        11     946     996 ..      82     132 ..      34     150 .. 0.68

  Alignments for each domain:
  == domain 1    score: 1.3 bits;  conditional E-value: 0.0052
    TIGR00927 946 geqelnaenqgeakedekGvdgeggsdGGdseeeeeeeeeeeeeeeeeeee 996
                  +e+e +  +++e+k+  + +  + ++d  d  +ee e++ ee+ +ee+e+e
  MMETSP1061-20121228|33390_1  82 EEEERKFIEDEESKDLLEAASSDSEGDQNDVVDEEYEDDAEEDWDEEDEDE 132
                  444444445556666667777777777777777777777755555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.26
# Mc/sec: 1634.63
//
Query:       MMETSP1061-20121228|33392_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 1842.57
//
Query:       MMETSP1061-20121228|33393_1  [L=1753]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-25   84.9 279.3    1.6e-08   30.6  39.8    6.1  6  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      2e-17   60.1 282.9    2.7e-06   23.2  34.7    6.9  7  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
  ------ inclusion threshold ------
        2.7    4.7   5.3         20    1.8   3.6    2.7  1  TIGR03782 Bac_Flav_CT_J: Bacteroides conjugative transposon TraJ protein


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7  34.0   4.6e-08   6.3e-05     233     504 ..     278     540 ..     272     544 .. 0.86
   2 !    4.3  40.1     0.001       1.4     685     951 ..     519     780 ..     513     785 .. 0.43
   3 !   15.8  43.3   3.5e-07   0.00048     196     502 ..     610     920 ..     606     924 .. 0.81
   4 !   21.9  33.4   4.9e-09   6.7e-06     235     919 ..     891    1143 ..     885    1146 .. 0.32
   5 !   30.6  39.8   1.2e-11   1.6e-08     679     984 ..    1131    1429 ..    1128    1430 .. 0.81
   6 !   20.7  22.3   1.2e-08   1.6e-05     698     950 ..    1403    1651 ..    1395    1664 .. 0.46

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.6e-08
    TIGR02168 233 rleelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenle 504
                  + ++l+ e +++ ++l+ +e+e+ + +a+++++e  l+e+++ k++ ++  +el+k   el++++ ++++ +e l +     e++l++  ++l+++++k + ++++l++ ++ +++l+ ++e+ +a +++++a++  l s++e+++ +l+e+rs  a l +++++ ++e++ l+++l+++++  ++ +++     ++++  ++++k l+++l+ ++e+ + le+e+++ ++ lee ++el+ea+ +  ++e++++ +  ++e+l++ +++++
  MMETSP1061-20121228|33393_1 278 DRNSLELECQTIVRKLQILEQERFSQQATIEMYEITLQEHDNDKTKIQRLETELTKVSAELRKQLYNIQKGKELLIKDY---EDKLQSNMKKLHRTQEKADAYQADLNAARNSTQKLEIDVEKYRAIAAQEKAKVDGLLSNEETMQLQLNEARSLNATLVKKVEKKRSEVSGLKEDLSNSTKLMQESNKDL----EEAH--TSQIKMLEQQLNMSKEQYTRLEKEFNARNASLEERDDELNEAKIKHSEYEHKINDMMVQMEALRRDENEAK 540
                  5567777888888899999999999999999999999999999888888888888888888888888888888765553...466666666777999999**********************************************************************999999998888754333333....3334..7899***********************************************************99988765 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.001
    TIGR02168 685 eeeieeleekiaelekelkelekeleeleeeleklrkeleelerklsel..kkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeel.keaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseey 951
                  e +i+++  ++++l++  +e++ + +e++ +++++  + e+++++ + +  + + +  ++e +++++ ++++ ++  e+e+++++ +e+l +++++  ke ee++e+ ++++e +keel ++ ++ +   +++++l +++++++   +   +e+ +l+ +l+++++++++++ee +  +++i+++e   + l+ +l++  ++ +++++++++l+e+lee ++  +++e  +ke  ++le+ ++ l++ ++r  e+e++++  ++++++ y
  MMETSP1061-20121228|33393_1 519 EHKINDMMVQMEALRRDENEAKVKESEYQLKIDQMSMQMEDIRKEAEMKyeEGKKAIRSQEKRNAQKLVSERANASREYEQRITAMQEQLRHQTDRHhKEIEETRERSQKNLESMKEELREEIRRKEG--DKANRLGNQLSSLR---RTFDEEKLSLTARLQDAQQNARDAAEEFQ-RQDQIRQQEL--DHLHGRLNSYFNDFTEKDNEISRLKERLEESKKANNDMEISQKEQAANLERNMSLLESEKERFLEMEAKLNDEITTMKATY 780
                  44444444444444444444444444444444444444444433333220022333334444445555555555555555555555555444433333444444444444444444444333222211..11112222222222...22333334444444444444444444444.2333333333..455555555555555555555555555555555555555555555555555555555555555555555555555544444 PP

  == domain 3    score: 15.8 bits;  conditional E-value: 3.5e-07
    TIGR02168 196 kElerqlksLerQaekAek.ykelkeelrelelallvlrleelkeeleeleeelkeaeeel.eeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleea.eaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkl....eeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqen 502
                  + ++r  k++e+  e+ +k ++ +keelre  ++   ++ ++l ++l++l+++++e++ +l ++l+++ +++  + ee++++++ +++el++l ++l+++ ++  ++++ei +lkerle+++k ++ +e +++e+ +++e+    l++ +e++ e++++l+++   +++   +++ e+   +e+l +++ee r++++++e++ + ++++++++e el++l+e+++ +++++eele++l    +++e +l++ ++ l++++ ++e+l+++l+ + ++    ++e ee+++++ +++++l+ + +rl+s  +  + 
  MMETSP1061-20121228|33393_1 610 HQTDRHHKEIEETRERSQKnLESMKEELREEIRRKEGDKANRLGNQLSSLRRTFDEEKLSLtARLQDAQQNARDAAEEFQRQDQIRQQELDHLHGRLNSYFNDFTEKDNEISRLKERLEESKKANNDMEISQKEQAANLERNMSLLESEKERFLEMEAKLNDEITTMKATySKAKSEMVGDIEDLHDQVEEGRKKLNDAEKENKMARKNIKEVEMELKDLTEELKIERSRVEELETELrvevSNFEGQLRASESALKDKKIQIENLTKDLDLATATS---SKEGEEKQKQIVSLRKQLDDMTNRLKSSTTTSQT 920
                  556677777777777776526678999999999999*****************999886651679999999************************************************999999999988888888888888888888888888877777665555543155677899999*****************************************999999999988765111145566666666666666666666666555544444...45789999*****************998777665 PP

  == domain 4    score: 21.9 bits;  conditional E-value: 4.9e-09
    TIGR02168  235 eelkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleee....leeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleel.eeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelerel 919 
                   ee+++++ +l+++l++++++l++ +++ +++e +l+e+rle+ +l++++                                                                                                                                                                                                                                                                                                                                                                                                                                                  ++    ++le++l+++k +l+ +e+e +++e++l +l+ +le+ + +  e+e++     ee +++l+++e+ +e+le+++++l+ el+++r + s+l++ l++ k+e++++e++le l++e ++l++e e + +  +++  ++   l+++++++++++++le++lee ++ k +le +l+++r+ele+++++ +e+ ++ ++++++l
  MMETSP1061-20121228|33393_1  891 EEKQKQIVSLRKQLDDMTNRLKSSTTTSQTYELQLQETRLENGKLKKSVS-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NM----NRLEDDLHDMKRSLSLAENEKKEVEKELFELKFALESSNTKVLEAEQRysvaKEEFNSRLETKETMLERLEKTLKELQFELDNERIETSDLKRSLKRVKAEMERNESDLEVLRHEYKELKEEKESTiKGISRDIGKKDHHLREAVQRYTRTIADLESKLEEETQLKLELEDRLSSARSELEDKQKQTQEMVQRHTKATAAL 1143
                   34444444444444444444444444444444444444444444433322.................................................................................................................................................................................................................................................................................................................................................................................................................................................11....111222333333333333333333333333333222222222222222000012222223333333333333333333333333333333333333333333333333333333333333332222022222233333333333444444444444444444444444444444444444444444444444433333333 PP

  == domain 5    score: 30.6 bits;  conditional E-value: 1.2e-11
    TIGR02168  679 keieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkrleekik 984 
                   + ++++++ +++le+++ +++ke ++l+++le+++++l k++ el+e ++k ++  ++le++++e++q+++  ++++ ele+ e+e+++ +++++e+++el+ +++e +e + ++e+ + elk+ +e++sel a++t++ ++++    +le+++  + +  +++e++++q++++ e+i +l ++i+e+e++le++ +  e++  + +sl+++l+  +++l++ + e  e+e+k+++  r+ ee+r+k+++l+ rle+ e e++e+     ++y++  +e+e++ ++ ++ +  ++ +++ l+++++
  MMETSP1061-20121228|33393_1 1131 EMVQRHTKATAALEKTFGSASKEKEQLKDDLERAKKDLLKKEVELREVSNKYRQDISSLESVKQEHNQYRDLSQSTRGELERREDEITKMRQDINELRTELEIKSAENKEMTISFERNEMELKQRKEQISELVARYTDQIADLE---AKLEEHSVAMTSNGDKVETVQAQANRKDEKIRELLRSIAEIEAKLEAAIRSKESARLKSESLSKELDDKESKLRTFEVERIEMETKLHTQSRSKEEARAKMTELSSRLERKEREVREVS----DRYKIYVMELESKLDQGTDTKHHLQSQIDMLRNNLD 1429
                   4567899999**************************************************************************************************************************999998766666...58899999999999999999999999999999999999998887766666666666666666666666666666666666666666666666666666666666666666666665544....456666666666655544556789999999999876 PP

  == domain 6    score: 20.7 bits;  conditional E-value: 1.2e-08
    TIGR02168  698 lekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleel.eeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlel.rleeleveiaelqerlsee 950 
                   le +l++  ++   l+++++ lr++l+++    s  ++e+ +l+++v +le ++a+ ++ +++le++ ee+++ + + e++l +a++e++e+ a +e   +e+++ ++++++l++ l++ +ee+++++  +++  + +++++k+ ++  ++++++   ++++++++i++l+++ e l++++ +l+ + + ++ + ++l+++l++ + +  ++++++k+   +++ + ++++++++ + + l +e ++ q +l+++
  MMETSP1061-20121228|33393_1 1403 LESKLDQGTDTKHHLQSQIDMLRNNLDSA----SVVSSEALELRQKVSSLELTVAKSKESVASLEDKLEEASKSRRKIEAALTKASSEKAEVIAALEGVINEVQNREDEIESLSELLQRRDEELQHAKIIATKALASAKDIQKRYKDKdSNRHSNIMGRMSEVNENIDRLTTKNESLQRKISSLERDLRDKNLECRRLKDQLRQFDGK--QMRENIKDDISAISTQSTEFTAFSNpANSDLAIEEDQRQMQLNAQ 1651
                   22223333333333333333333333332....2223344444444444444444444444444444444444444444444444444444555555555555555555555555555444444444444444455555555554443134555566666666666666666666666666666666666666666666665555443..344444444444444444444443312334444555555555444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.0  23.4   0.00015      0.21     313     506 ..     281     478 ..     270     484 .. 0.87
   2 !    8.8  50.1   4.5e-05     0.061     166     491 ..     353     686 ..     352     689 .. 0.77
   3 !   14.9  35.6   6.4e-07   0.00088     670     935 ..     671     940 ..     664     944 .. 0.73
   4 !   21.8  39.7   5.1e-09     7e-06     675     939 ..     940    1219 ..     936    1226 .. 0.66
   5 !   15.1  21.7   5.4e-07   0.00074     318     464 ..    1119    1265 ..    1106    1268 .. 0.91
   6 !   23.2  34.7     2e-09   2.7e-06     235     500 ..    1251    1515 ..    1247    1533 .. 0.86
   7 !   10.0  11.7   1.9e-05     0.026     317     463 ..    1500    1650 ..    1499    1660 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.00015
    TIGR02169 313 ekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkea....aelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqakaseee 506
                    e e + + ++l+ +e+e+ +++++ie  e  ++e+  +++k++    el ++ +elr++l +++k      +   ++l++  +kl +++e+ +  + +l+   +  ++le ++++ +a  ++ ++k+  l ++ e+++ ++++a+    +l +++ek ++e++ lke+l++  k ++e++++l+e+ +++  + e+
  MMETSP1061-20121228|33393_1 281 SLELECQTIVRKLQILEQERFSQQATIEMYEITLQEHDNDKTKIQRLETELTKVSAELRKQLYNIQKGKelliKDYEDKLQSNMKKLHRTQEKADAYQADLNAARNSTQKLEIDVEKYRAIAAQEKAKVDGLLSNEETMQLQLNEARSLNATLVKKVEKKRSEVSGLKEDLSNSTKLMQESNKDLEEAHTSQIKMLEQ 478
                  45677888999999**********************999999988877777777777777777766654111267789999999*******************************************************************************************************99987655554 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 4.5e-05
    TIGR02169 166 vaeFdekkekaleeLeeveeriervelvieevrqqlerLekerekaerYkeLk.kekreleltlllke.....lealekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkeklek.lkeelnelkreldrlleelkrleeelaelkaelerieek.iaeleeeleelaeeikkaeq.kleqlkedlekaek....elrklkeeleklekelseler 491
                  +++++ k++  +++L + +e+ +  ++ ++  r+  ++Le +    e+Y+++  +ek ++ + l  +e     l++++   +++ k++++++ e+ +l+e +++  k ++e +k+lee+ +   k+ e++ +  ke+   l+ e +  +++++e  +el++a+ +  ++e +i+ +  ++e+l+r+ +e k++  + + ++++   ++e++r+e+e + +e +++ + ++  k++ +k + e+ n ++  ++r +  +++l+++  ++++e+e+ +e+ +++le+ +eel+eei+++e+ k+++l ++l+++++    e+  l++ l++ +++ +++++
  MMETSP1061-20121228|33393_1 353 IKDYEDKLQSNMKKLHRTQEKADAYQADLNAARNSTQKLEID---VEKYRAIAaQEKAKVDGLLSNEEtmqlqLNEARSLNATLVKKVEKKRSEVSGLKEDLSNSTKLMQESNKDLEEAHTSQIKMLEQQLNMSKEQYTRLEKEFNARNASLEERDDELNEAKIKHSEYEHKINDMMVQMEALRRDENEAKVKESEYQLKIDQMSMQMEDIRKEAEMKYEEGKKAIRSQE--KRNAQKlVSERANASREYEQRITAMQEQLRHQTDRHHKEIEETRERsQKNLESMKEELREEIRRKEGdKANRLGNQLSSLRRtfdeEKLSLTARLQDAQQNARDAAE 686
                  789*************************************97...678999862456666665544431111134444445566788999999999999999999999999999999988766667888888889999999999999999999999999999999************************************************99988777766655433..333344045555555556788999999*************9987752678************999863566777777666650000445555555555555555544 PP

  == domain 3    score: 14.9 bits;  conditional E-value: 6.4e-07
    TIGR02169 670 sasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleeeee....klkerleeleeklseleeeleekkeelkeleaeieeleeklaklkea.ledleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeie....eleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeels 935
                  +a+ ++  ++ r+  ee +r+ +  q+el++++ rl+++ +   +  ++i++++++le+ ++ ++     +ke++++le+++s le e+e   e+ ++l+ ei  ++++ +k k + + d+e+   ++++ee +++l++ e+e +  ++ ++e+e el++l+ e ++++++++el+ e +    ++e q ++ e ++++ k+++e+l +    l  a ++ ++e ++ +k++  l+++l  + ++ +   ++ ++ + +l+e++ +  +l++ +s
  MMETSP1061-20121228|33393_1 671 TARLQDAQQNARDAAEEFQRQDQIRQQELDHLHGRLNSYFNDFTEKDNEISRLKERLEESKKANNdmeiSQKEQAANLERNMSLLESEKERFLEMEAKLNDEITTMKATYSKAKSEmVGDIED--LHDQVEEGRKKLNDAEKENKMARKNIKEVEMELKDLTEELKIERSRVEELETELRvevsNFEGQLRASESALKDKKIQIENLTK---DLDLATATSSKEGEEKQKQIVSLRKQLDDMTNRLKSSTTTSQTYELQLQETRLENGKLKKSVS 940
                  56677778889999*************************************999999987766552222679999***********************************9999773688886..6889*********************************99999999998887664421114555555555555555555555555...555555555555555555555555555555555555444444444444444444444444443 PP

  == domain 4    score: 21.8 bits;  conditional E-value: 5.1e-09
    TIGR02169  675 eklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleee....eeklkerleeleeklseleeeleek.......keelkeleaeieeleeklaklkealedleaelsee...kieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeel.eeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealeeelselee 939 
                    +++rl+++l++++r+l+ + +e++++ek+l+el+ +l+ ++ k+ e+e++ + ++ee     e+++  le le+ l+el+ el ++       k++lk+++ae+e+ e +l+ l+++ ++l++e+++      + i ++ ++l+e v+r    ++++e++l+++++ k  le++   +++e e+ ++q +e+ ++  +  a le++   + +e+e+   +Le  +kdL k+  el++  ++ ++ +  le+  +++++     + ++ +le + +e+ +
  MMETSP1061-20121228|33393_1  940 SNMNRLEDDLHDMKRSLSLAENEKKEVEKELFELKFALESSNTKVLEAEQRYSVAKEEfnsrLETKETMLERLEKTLKELQFELDNErietsdlKRSLKRVKAEMERNESDLEVLRHEYKELKEEKESTikgISRDIGKKDHHLREAVQRYTRTIADLESKLEEETQLKLELEDRLSSARSELEDKQKQTQEMVQRHTKATAALEKTFGSAsKEKEQLKDDLERAKKDLLKKEVELREVSNKYRQDISSLESVKQEHNQYRDLSQSTRGELERREDEITK 1219
                   56789***************************************99999987655544111167777788888999998888777661111111566777788888888888888888888876654331113456778888999*********************777777777777776666666666666666666666555544333033333334566666665555555555555555555555554444444444445555555555555554 PP

  == domain 5    score: 15.1 bits;  conditional E-value: 5.4e-07
    TIGR02169  318 ledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlked 464 
                     ++e++++++++ +++  +  ++le+   +  ke+e+lk+ l+ +k+ l +++ el ev+++ ++    l+++k++ +++++  ++ ++el+r  +e  +++++++el+ ele + ++ +e+  + e  + e+k+ ++++++l + 
  MMETSP1061-20121228|33393_1 1119 RSELEDKQKQTQEMVQRHTKATAALEKTFGSASKEKEQLKDDLERAKKDLLKKEVELREVSNKYRQDISSLESVKQEHNQYRDLSQSTRGELERREDEITKMRQDINELRTELEIKSAENKEMTISFERNEMELKQRKEQISELVAR 1265
                   345677777888888889999999*********************************************************************************************************************998775 PP

  == domain 6    score: 23.2 bits;  conditional E-value: 2e-09
    TIGR02169  235 alekqkekiekelaeleeelekleeeieelekeleeiekkleelnkkieklgeeeqlavkekleelkaeiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelselerelaeleaqa 500 
                   +l++ ke+i++ +a+ + ++++le+++ee    + +  +k+e+++++ ++  +e+++++ + ++e++a++e + r+ + ++ + e + ++l   e++++  + e  e+e++++++ + +e+  +++ el  +le +++e+ ev+ + +  + el+++  +  ++k++l++    l+  l+ +  +++e  el++++ ++e  +a+ +e++ +l++++++a + ++++++ l ka++e+ +  + le + +e+++ e e++ l    
  MMETSP1061-20121228|33393_1 1251 ELKQRKEQISELVARYTDQIADLEAKLEEHSVAMTSNGDKVETVQAQANR-KDEKIRELLRSIAEIEAKLEAAIRSKESARLKSESLSKELDDKESKLRTFEVERIEMETKLHTQSRSKEEARAKMTELSSRLERKEREVREVSDRYKIYVMELESKLDQGTDTKHHLQSQIDMLRNNLDSASVVSSEALELRQKVSSLELTVAKSKESVASLEDKLEEASKSRRKIEAALTKASSEKAEVIAALEGVINEVQNREDEIESLSELL 1515
                   56778999999999999999999999999999999999999999999998.68899999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999988887776666666666666666666777888888999999999999999999999999999999999999999999999999999999999999999888888888888775544 PP

  == domain 7    score: 10.0 bits;  conditional E-value: 1.9e-05
    TIGR02169  317 eledaeerlakaeaeidklkeeieelereieeekkereklkeelkelke.eleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleee..laelkaelerieekiaeleeeleelaeeikkaeqk.leqlke 463 
                   e+++ e++++ + + +++ +ee+++ +   ++  +  + +++++k++   + ++++ ++ ev+++ ++l  + ++l++k+++l++ l + + e +rl+++l++ + +  ++++k ++ +i  + +e+ +  + ++  ++ +e +  +ql++
  MMETSP1061-20121228|33393_1 1500 EVQNREDEIESLSELLQRRDEELQHAKIIATKALASAKDIQKRYKDKDSnRHSNIMGRMSEVNENIDRLTTKNESLQRKISSLERDLRDKNLECRRLKDQLRQFDGKqmRENIKDDISAISTQSTEFTAFSNPANSDLAIEEDQrQMQLNA 1650
                   4555556666666666666666666555555556677788999987765145678899999999999999999999999999999999999999999999999875511678999999999999999987777666655444330334444 PP

>> TIGR03782  Bac_Flav_CT_J: Bacteroides conjugative transposon TraJ protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   3.6     0.015        20     110     167 ..     526     582 ..     465     592 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.015
    TIGR03782 110 klekealvrdpekaylvsdeefdkkleelGwspsdlktlaglyaeraaynlkksvkel 167
                   ++ eal+rd+++a + ++ e++ k++++ ++ +d+   a +  e+ +  ++ + k+ 
  MMETSP1061-20121228|33393_1 526 MVQMEALRRDENEAKV-KESEYQLKIDQMSMQMEDIRKEAEMKYEEGKKAIRSQEKRN 582
                  4578999999998875.67889********************9998887777665554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1753 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       654  (0.159434); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                        36  (0.00877621); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 3.96u 0.24s 00:00:04.20 Elapsed: 00:00:02.14
# Mc/sec: 1081.20
//
Query:       MMETSP1061-20121228|33395_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1040.07
//
Query:       MMETSP1061-20121228|33394_1  [L=451]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (451 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2125.97
//
Query:       MMETSP1061-20121228|33397_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.24
# Mc/sec: 2551.79
//
Query:       MMETSP1061-20121228|33396_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.5e-102  339.6   0.6   4.7e-102  339.2   0.0    1.5  2  TIGR02666 moaA: molybdenum cofactor biosynthesis protein A
      9e-65  216.4   0.0    1.2e-64  216.0   0.0    1.2  1  TIGR02668 moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
    2.8e-20   70.8   0.0    4.3e-20   70.2   0.0    1.2  1  TIGR04055 rSAM_NirJ2: putative heme d1 biosynthesis radical SAM protein NirJ2
    3.4e-19   66.8   0.0    5.1e-19   66.2   0.0    1.2  1  TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE
    6.1e-17   59.7   0.0    9.6e-17   59.1   0.0    1.2  1  TIGR03961 rSAM_PTO1314: archaeal radical SAM protein, PTO1314 family
    2.6e-15   54.3   0.0    4.4e-15   53.6   0.0    1.2  1  TIGR04053 sam_11: radical SAM protein, BA_1875 family
    2.7e-15   54.0   0.0    4.2e-15   53.4   0.0    1.2  1  TIGR04051 rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ
    3.1e-15   53.8   0.0    4.6e-15   53.2   0.0    1.2  1  TIGR04133 rSAM_w_lipo: radical SAM enzyme, rSAM/lipoprotein system
    3.1e-14   50.2   0.0      5e-14   49.5   0.0    1.2  1  TIGR04054 rSAM_NirJ1: putative heme d1 biosynthesis radical SAM protein NirJ1
    5.9e-14   49.8   0.0    9.2e-14   49.2   0.0    1.2  1  TIGR03962 rSAM_MSMEG_1423: mycofactocin radical SAM maturase
    5.4e-12   43.0   0.0    7.2e-12   42.6   0.0    1.1  1  TIGR04163 rSAM_cobopep: peptide-modifying radical SAM enzyme CbpB
    4.6e-11   40.7   0.0    7.7e-11   39.9   0.0    1.3  1  TIGR03963 rSAM_QueE_Clost: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
    2.1e-10   37.9   0.0    3.9e-10   37.0   0.0    1.4  1  TIGR04068 rSAM_ocin_clost: Cys-rich peptide radical SAM maturase CcpM
    2.8e-10   37.2   0.0    4.7e-10   36.5   0.0    1.3  1  TIGR04103 rSAM_nif11_3: nif11-class peptide radical SAM maturase 3
    3.6e-10   37.3   0.0    6.5e-10   36.5   0.0    1.3  1  TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein
    4.9e-10   36.2   0.0    7.4e-10   35.6   0.0    1.2  1  TIGR03913 rad_SAM_trio: Y_X(10)_GDL-associated radical SAM protein
    6.4e-10   36.2   0.0      1e-09   35.5   0.0    1.2  1  TIGR03977 rSAM_paired_2: His-Xaa-Ser system radical SAM maturase HsxC
      9e-10   35.9   0.0    1.3e-09   35.3   0.0    1.1  1  TIGR03470 HpnH: hopanoid biosynthesis associated radical SAM protein HpnH
    3.4e-09   33.9   0.0    5.6e-09   33.2   0.0    1.4  1  TIGR03974 rSAM_six_Cys: SCIFF radical SAM maturase
    6.5e-09   33.3   0.2    1.5e-07   28.8   0.2    2.2  1  TIGR04148 GG_samocin_CFB: radical SAM peptide maturase, GG-Bacteroidales family
    1.5e-08   32.0   0.0    2.3e-08   31.5   0.0    1.2  1  TIGR04167 rSAM_SeCys: radical SAM/Cys-rich domain protein
    1.8e-08   31.9   0.0    3.2e-08   31.1   0.0    1.3  1  TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme
    2.2e-08   32.0   0.0    5.3e-08   30.7   0.0    1.6  1  TIGR04038 tatD_link_rSAM: radical SAM protein, TatD family-associated
    6.5e-08   30.2   0.0    1.3e-07   29.2   0.0    1.5  1  TIGR04078 rSAM_yydG: peptide modification radical SAM enzyme, YydG family
    3.1e-07   27.5   0.0    4.4e-07   27.0   0.0    1.2  1  TIGR04084 rSAM_AF0577: putative peptide-modifying radical SAM enzyme, AF0577 family
    4.1e-07   27.6   0.0    1.9e-06   25.4   0.0    2.1  3  TIGR04100 rSAM_pair_X: radical SAM enzyme, TIGR04100 family
    2.1e-06   24.9   0.0    3.3e-06   24.2   0.0    1.2  1  TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase
    2.6e-06   24.3   0.0    3.5e-06   23.9   0.0    1.2  1  TIGR03978 rSAM_paired_1: His-Xaa-Ser system radical SAM maturase HsxB
    1.1e-05   22.1   0.0    1.7e-05   21.5   0.0    1.2  1  TIGR04064 rSAM_nif11: nif11-like peptide radical SAM maturase
    2.3e-05   21.0   0.0    3.5e-05   20.4   0.0    1.2  1  TIGR03906 quino_hemo_SAM: quinohemoprotein amine dehydrogenase maturation protein
    3.1e-05   20.7   0.4    0.00023   17.8   0.3    2.1  1  TIGR01290 nifB: nitrogenase cofactor biosynthesis protein NifB
    3.5e-05   20.9   0.0    0.00032   17.7   0.0    2.1  2  TIGR03972 rSAM_TYW1: wyosine biosynthesis protein TYW1
    0.00061   17.0   0.0    0.00099   16.3   0.0    1.2  1  TIGR00433 bioB: biotin synthase
    0.00066   16.4   0.1     0.0044   13.7   0.1    1.9  1  TIGR04136 rSAM_FibroRumin: radical SAM peptide maturase, FibroRumin system
     0.0044   13.8   0.0     0.0065   13.2   0.0    1.3  1  TIGR02351 thiH: thiazole biosynthesis protein ThiH
     0.0064   13.9   0.0      0.012   13.0   0.0    1.4  1  TIGR03365 Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
  ------ inclusion threshold ------
      0.023   12.5   0.0       0.05   11.4   0.0    1.5  1  TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein
      0.026   11.4   0.0      0.056   10.3   0.0    1.5  1  TIGR04150 quasi_rSAM: quasi-rSAM protein, GG-Bacteroidales system
      0.032   11.1   0.0      0.049   10.5   0.0    1.2  1  TIGR03822 AblA_like_2: lysine-2,3-aminomutase-related protein


Domain annotation for each model (and alignments):
>> TIGR02666  moaA: molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.2   0.5       6.3   6.6e+02     286     324 ..      77     119 ..      70     129 .. 0.49
   2 !  339.2   0.0  4.4e-104  4.7e-102       1     336 []     143     477 .]     143     477 .] 0.91

  Alignments for each domain:
  == domain 1    score: -3.2 bits;  conditional E-value: 6.3
    TIGR02666 286 lrellrkgasdelleailkavlk..kkpekheleee....ekkek 324
                  lr+ lr++++++  +ai + + k  kk++k++l       +++++
  MMETSP1061-20121228|33396_1  77 LRRRLREENKNNRSTAISHGMKKyaKKNDKQNL--LspivKEEAE 119
                  667777777666555555555431022222222..1334433333 PP

  == domain 2    score: 339.2 bits;  conditional E-value: 4.4e-104
    TIGR02666   1 lvDkfgRkidyLRiSvtdrCnlrCvYCmpeeakleflekeelLtleeierlvklavklgvekvRlTGGEPllrkdlvelvarlaklegieledialttNgllLerkakaLkeaGlkrvnvSLDsLdaekfkkitrrs.gklekvlegieaaleaglkkvKlNtVvlkgvnddeivdlvefakekgvelrfiElmplgeaekaeekevvsaaeilerleeafgelepveskeekepaeaarvkleggkgeiGlIspvskkFCetCnrlRltadgklklCLfaeeevdlrellrkgasdelleailkavlkkkpekheleee..ekkekkakkremsqiGG 336
                  l+DkfgR+++yLRiS+++rCnlrC+YCmpe++   +++ e+lLt  ei +l++ + + gv+k+RlTGGEPllrkdlvelva+l++le+  le+i +ttNg++L++++ +L +aGl++vn+SLDsL+++kf+k+trr  + +++v+e+i+ + +   ++ K+N+Vv+ + n de++d+ve++++ +v++rfiE+mp++++ ++ +++++s +++++r++    e +  +++++    +  + + ++  g++G+I+++s++FC+tCnrlRltadg+lk CLf ++ev+lr+l+r++ sd+ l++i++  +++k+ k   +++  + ++++ ++r m+ iGG
  MMETSP1061-20121228|33396_1 143 LKDKFGRQHSYLRISLSERCNLRCQYCMPEDG-VPLQPAENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLEN-PLEQIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSLKPDKFAKLTRRPpAYFDRVMEAIDDCAKYLPNRTKINCVVMPE-NADELQDFVELSRDMPVDIRFIEYMPFNDN-QWGTNDFLSYRQMQDRINGLRREEDGPNDTTKWWRLQPNQDHQDQSLGRVGFITSMSEHFCGTCNRLRLTADGQLKVCLFGKTEVSLRDLMRQDGSDDMLQKIIHYSVQRKNFKLGGHKDmeDLRAHSDENRPMTLIGG 477
                  79****************************86.569***************************************************9.56*******************************************9863579*************************97.999************************998.669999************999777766666655555555544666779********************************************************99999999876655554444567889999*****9 PP

>> TIGR02668  moaA_archaeal: probable molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  216.0   0.0   1.2e-66   1.2e-64       1     298 [.     143     449 ..     143     453 .. 0.85

  Alignments for each domain:
  == domain 1    score: 216.0 bits;  conditional E-value: 1.2e-66
    TIGR02668   1 leDrfgReveslRisvtkeCnleCvyCHke.Geees.aeeelsaeeiervvrvakelGvrkvkltGGEPllRkDleeiierikkee..ikevslttnGilLeklakkLkeaGLdRvnvSldtldeekykkit..srdaleevlegiekAvdvgltPvKlnmvvlkglneeevkellelaaeeegailqliElepeeege...kelkkyaidikeieeeleekadkvetr...elhnRkkYvidsdvevevvkpmdnpefCanCtrlRltadGklktCllreddlvdiaealkeeeeee.lreafreavakr 298
                  l+D+fgR+ + lRis++++Cnl+C yC  e G   + ae++l++ ei +++  +++ Gv+k++ltGGEPllRkDl+e+++++++ e  ++++ +ttnG++L+k   +L +aGL  vn+Sld+l+++k++k+t      +++v+e+i++  ++  +  K+n vv+   n++e+++++el + +  +++++iE++p +  +   + + +y++  ++i+   +e+     t    +l+  +    +s ++v ++ +m++ +fC  C+rlRltadG+lk Cl+ + + v++++ ++++ ++  l+++++  v+++
  MMETSP1061-20121228|33396_1 143 LKDKFGRQHSYLRISLSERCNLRCQYCMPEdGVPLQpAENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLEnpLEQIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSLKPDKFAKLTrrPPAYFDRVMEAIDDCAKYLPNRTKINCVVMP-ENADELQDFVELSR-DMPVDIRFIEYMPFNDNQwgtNDFLSYRQMQDRINGLRREEDGPNDTTkwwRLQPNQDHQDQSLGRVGFITSMSE-HFCGTCNRLRLTADGQLKVCLFGK-TEVSLRDLMRQDGSDDmLQKIIHYSVQRK 449
                  68*************************865277655799*******************************************98652379******************************************876789**************8899*********.9*************.599*********9876653436777777777777664444433222221235555555555555*********98.9********************888.67789999997766665899888888776 PP

>> TIGR04055  rSAM_NirJ2: putative heme d1 biosynthesis radical SAM protein NirJ2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.2   0.0   4.1e-22   4.3e-20       7     164 ..     159     323 ..     155     334 .. 0.84

  Alignments for each domain:
  == domain 1    score: 70.2 bits;  conditional E-value: 4.1e-22
    TIGR04055   7 tnkcnlackhcyrdagkk...aeeelsteeakklideiakagfkilifsGGePllrediyeliayatk..kglrvv.lgtnGtliteevakklkeaGvqrvgisldsldaekhdkf.rklegafeeavegienlre.aglefqinttvmdwnkeeleaitdlavel 164
                  +++cnl+c++c  + g+    ae+ l+ +e  kl   +++ g + + ++GGePllr+d++el+a  ++  + l  + ++tnG  +++++  +l +aG+++v isldsl+++k  k+ r+ +  f++ +e+i+ + +    + +in  vm +n +el++ ++l+ ++
  MMETSP1061-20121228|33396_1 159 SERCNLRCQYCMPEDGVPlqpAENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRleNPLEQIgMTTNGVTLSKHL-PDLVDAGLTHVNISLDSLKPDKFAKLtRRPPAYFDRVMEAIDDCAKyLPNRTKINCVVMPENADELQDFVELSRDM 323
                  679*********99987544355566778999*******************************987651145654449****9998765.689********************99835555668999******9761466789******************99876 PP

>> TIGR02109  PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   4.8e-21   5.1e-19       9     175 ..     154     326 ..     149     344 .. 0.84

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 4.8e-21
    TIGR02109   9 llaeltyrcPlqcPycs..nPlelarkeaeltteewlevleqaaelGvlqlhfsGGePlarkdlvelvkaarelgl...ytnlitsgvglteerlealaeaGldhvqlslqavdeaaadriaGlkkafekklevaravkeadlP..ltlnavlhrenideieeiielaielead 175
                  l + l+ rc l+c yc   + + l+ +e+ lt  e +++ +  +  Gv ++ ++GGePl rkdlvelv++ ++l        + t gv l+ ++l +l +aGl hv +sl + ++ + ++++    a+  ++  a    ++ lP    +n+v+  en de+++++el+ ++  d
  MMETSP1061-20121228|33396_1 154 LRISLSERCNLRCQYCMpeDGVPLQPAENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLENpleQIGMTTNGVTLS-KHLPDLVDAGLTHVNISLDSLKPDKFAKLTRRPPAYFDRVMEAIDDCAKYLPnrTKINCVVMPENADELQDFVELSRDMPVD 326
                  5578999*********63367999999999*****************************************99986111345668899886.579***************************999998776655555555556633689*******************997654 PP

>> TIGR03961  rSAM_PTO1314: archaeal radical SAM protein, PTO1314 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   9.1e-19   9.6e-17      32     186 ..     161     328 ..     154     358 .. 0.82

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 9.1e-19
    TIGR03961  32 tcnlrcemc.p...fwrrkdekllsleeeikmldalekagvlfmgfeggepllrkdleeileesykrf.....ytslvtngwllkdrvks.iseyldylfvsidgie.evhdk.lrgipgsferavegikeakrylp..vslsftitkenldeildvvelarklevsvs 186
                   cnlrc+ c p      ++ e+ll+  e +k+   +++ gv  + + ggepllrkdl e++ + + r+        + tng  l +++ + ++  l ++ +s+d ++ +   k  r  p+ f+r +e i ++ +ylp  + +   +  en de++d vel+r++ v + 
  MMETSP1061-20121228|33396_1 161 RCNLRCQYCmPedgVPLQPAENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLN-RLenpleQIGMTTNGVTLSKHLPDlVDAGLTHVNISLDSLKpDKFAKlTRRPPAYFDRVMEAIDDCAKYLPnrTKINCVVMPENADELQDFVELSRDMPVDIR 328
                  7********52333567899**************************************9987644.33111125689*****9988886615678**********984455552588999*****************555788999*****************999886 PP

>> TIGR04053  sam_11: radical SAM protein, BA_1875 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.6   0.0   4.1e-17   4.4e-15      17     180 ..     161     327 ..     156     333 .. 0.85

  Alignments for each domain:
  == domain 1    score: 53.6 bits;  conditional E-value: 4.1e-17
    TIGR04053  17 ACeLaCkHCRAeAqk..krlpeeltteegkklldqiaefgkpkpllvltGGDpleredlvelveyakskglrvslsPsvtpklt.reaikklkeagvkalslslDgataetHdai.RgvaGsfektlkairalle.lglklqintvvtkenveelpevakllkdlgvkl 180
                   C+L C++C  e     +++++ lt+ e +kl +  +  g   + + ltGG+pl r+dlvelv+  ++++ ++     +t+ +t ++++  l +ag++++ +slD+ ++++  ++ R  +  f++ ++ai ++++ l  + +in vv+ en +el++ ++l +d+ v +
  MMETSP1061-20121228|33396_1 161 RCNLRCQYCMPEDGVplQPAENLLTNTEIMKLATWFNRQGV--NKIRLTGGEPLLRKDLVELVANLNRLENPLEQIGMTTNGVTlSKHLPDLVDAGLTHVNISLDSLKPDKFAKLtRRPPAYFDRVMEAIDDCAKyLPNRTKINCVVMPENADELQDFVELSRDMPVDI 327
                  6********99865511566666888888888887777666..6889************************99998889998883568*********************9998764888999********9877625789********************999998765 PP

>> TIGR04051  rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.4   0.0     4e-17   4.2e-15       8     176 ..     158     333 ..     154     345 .. 0.82

  Alignments for each domain:
  == domain 1    score: 53.4 bits;  conditional E-value: 4e-17
    TIGR04051   8 lirrcnlkckhcysvsadvdfkge..lstaevlevlddlkefkvpvlilsGGepllrkdlfeiaararel...glyvalstnGtlideenieriaeigfdyvGisldGlea..thdefrrleGafdealaavrlckea.gikvGlrltlteenaedlpallelleeedvdkfylshl 176
                  l  rcnl+c++c         + e  l++ e+++    +++ +v+ + l+GGepllrkdl e+ a+ ++l      ++++tnG +++++ +  + ++g  +v isld l+   +    rr    fd+ ++a++ c++    +  +  ++  ena++l +++el ++  vd  ++ ++
  MMETSP1061-20121228|33396_1 158 LSERCNLRCQYCMPEDGVPLQPAEnlLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLenpLEQIGMTTNGVTLSKH-LPDLVDAGLTHVNISLDSLKPdkFAKLTRRPPAYFDRVMEAIDDCAKYlPNRTKINCVVMPENADELQDFVELSRDMPVDIRFIEYM 333
                  678*********9876654444433378899*******************************977655441115689********9876.5667799************851144556888899*********99775267999999********************9997776655 PP

>> TIGR04133  rSAM_w_lipo: radical SAM enzyme, rSAM/lipoprotein system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   4.4e-17   4.6e-15      31     189 ..     159     320 ..     144     335 .. 0.82

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 4.4e-17
    TIGR04133  31 tlrcnlackhcGsdckkdsevkdlpaedflkvld..sitphvepkevl.viltGGealvredleeiGkelkrrGyp...wGlvtnGlllteerleslleaGlrsitisldGleeah..nylrrnpksfekaleaikllakteeltfdvvtcvnrknlaeleelkell 189
                  + rcnl+c++c      +  v+  pae++l+  +  ++++  + + v+ + ltGGe+l+r+dl e+  +l+r   p    G+ tnG++l++ +l +l++aGl  + isld l+  +     rr p  f++ +eai+  ak    +  +   v  +n +el+++ el 
  MMETSP1061-20121228|33396_1 159 SERCNLRCQYCMP----EDGVPLQPAENLLTNTEimKLATWFNRQGVNkIRLTGGEPLLRKDLVELVANLNRLENPleqIGMTTNGVTLSK-HLPDLVDAGLTHVNISLDSLKPDKfaKLTRRPPAYFDRVMEAIDDCAKYLPNRTKINCVVMPENADELQDFVELS 320
                  569******9864....45577778888887655447888888888862669*******************999883336*********86.799*****************854322567899999************9988888887778899999999998875 PP

>> TIGR04054  rSAM_NirJ1: putative heme d1 biosynthesis radical SAM protein NirJ1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.5   0.0   4.8e-16     5e-14       6     167 ..     158     326 ..     155     333 .. 0.81

  Alignments for each domain:
  == domain 1    score: 49.5 bits;  conditional E-value: 4.8e-16
    TIGR04054   6 vtrtcnlkckhcyaesde..kkyedeltteeakkliddlaefkvpvllfsGGepllredlfelaeyakkrg..i.ratlstnGtlitkevakelkkigvgyvGisldGikevn.dkf.rgvkGafeaaleGirncva.vgqkvGlrftinkknykelekifdlieeeeid 167
                  ++++cnl+c++c  e     +  e+ lt+ e  kl   ++   v  + ++GGepllr+dl+el++  ++ +  + +  ++tnG  ++k+   +l ++g+++v isld +k  +  k+ r     f++ +e i +c +    +  +   +  +n++el++  +l +++ +d
  MMETSP1061-20121228|33396_1 158 LSERCNLRCQYCMPEDGVplQPAENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLEnpLeQIGMTTNGVTLSKHL-PDLVDAGLTHVNISLDSLKPDKfAKLtRRPPAYFDRVMEAIDDCAKyLPNRTKINCVVMPENADELQDFVELSRDMPVD 326
                  5789********988654115566779999*********************************98766433125245689***9999876.67999************98543144425566778**********873578999999************99999988775 PP

>> TIGR03962  rSAM_MSMEG_1423: mycofactocin radical SAM maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.0   8.7e-16   9.2e-14      18     187 ..     158     334 ..     152     358 .. 0.83

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 8.7e-16
    TIGR03962  18 ltyacnlacvhclsssgk...rdeeelstaeakalidelealrvfyvnvgggeplvrpdflelldya..varkv.gvkfstngvrideevadrlaatdyvdvqisldgataevndav..rgagsfdlavraldnlaaagfagvkisvvltrrnvgqldefkaladsygaqlrltrlrp 187
                  l+  cnl+c +c+   g+    +e+ l+ +e  +l   +++  v  + + ggepl+r d++el+     +++ +  + ++tngv ++++  d +  +    v+isld   ++   ++  r    fd+ + a+d  a    +  ki++v+  +n+++l++f  l+ ++  ++r+    p
  MMETSP1061-20121228|33396_1 158 LSERCNLRCQYCMPEDGVplqPAENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLnrLENPLeQIGMTTNGVTLSKHLPDLVD-AGLTHVNISLDSLKPDKFAKLtrRPPAYFDRVMEAIDDCAKYLPNRTKINCVVMPENADELQDFVELSRDMPVDIRFIEYMP 334
                  6778************97321466779999*********************************98651133333246689*******99998765.57899*******99987665533677899************99999************************999999877666 PP

>> TIGR04163  rSAM_cobopep: peptide-modifying radical SAM enzyme CbpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   6.9e-14   7.2e-12      57     243 ..     145     328 ..      92     354 .. 0.77

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 6.9e-14
    TIGR04163  57 lrfelkpsavylnPtercnlncsycyiPeelrrsGkkm.svekllea..lerlkeyfktvlpegrkprvifhGaePllake..avfaaidafaddf.kfGvqtnatllddeaiefltsrgvsiGlsldaplke.vadrtrktwsGkgvydkvvraleklkgy..asfnvittvtkenlekltemvdflhaeevpvv 243
                   +f+ + s   +  +ercnl c+yc +Pe+    G  + + e+ll    + +l  +f+     + ++++ + G ePll k+  ++ a +++ ++ + + G+ tn++ l ++  +++      + +sld+   +  a+ tr      + +d+v++a++  + y  +  ++ + v  en ++l + v++  +  v + 
  MMETSP1061-20121228|33396_1 145 DKFGRQHSYLRISLSERCNLRCQYC-MPED----GVPLqPAENLLTNteIMKLATWFN----RQGVNKIRLTGGEPLLRKDlvELVANLNRLENPLeQIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSLKPDkFAKLTR---RPPAYFDRVMEAIDDCAKYlpNRTKINCVVMPENADELQDFVELSRDMPVDIR 328
                  467777888888999**********.4654....443313445544301236677776....578999************9445689999999987468************99999999999*******88762577777...46899**************5445789999**************9987776665 PP

>> TIGR03963  rSAM_QueE_Clost: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9   0.0   7.3e-13   7.7e-11      27     104 ..     160     242 ..     139     267 .. 0.81

  Alignments for each domain:
  == domain 1    score: 39.9 bits;  conditional E-value: 7.3e-13
    TIGR03963  27 kgcnlncsycdtkyanekdaayellsaeeil...dyiketgvknvtltGGePllqedieelielllkkke..leveietnGsv 104
                  + cnl+c yc  +     + a +ll++ ei+   ++ +++gv+++ ltGGePll +d+ el+  l++ ++   ++ + tnG  
  MMETSP1061-20121228|33396_1 160 ERCNLRCQYCMPEDGVPLQPAENLLTNTEIMklaTWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLENplEQIGMTTNGVT 242
                  57**************************9973335899************************988765552257888999965 PP

>> TIGR04068  rSAM_ocin_clost: Cys-rich peptide radical SAM maturase CcpM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   3.7e-12   3.9e-10      72     259 ..     140     314 ..      84     339 .. 0.79

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 3.7e-12
    TIGR04068  72 tkllelylenklqtlilqvtqeCnlRCkYCvYsGsyenRvHsnkrmsleiAkkaiDflikhsedlekvslgFYGGEPllelelikkcveYikekaegkkilfnlttngtllteeiieflvenevsllislDGpkeiHdknRkfadggkGsfdvilenlkkikkkypeylekvafnavldpendfscie 259
                  t+ l+    ++ ++l + + + CnlRC+YC+           n   ++ei k a  f     + ++k++l+  GGEPll+ +l+  + +  + +++    +  +ttng  l++   + +     ++ islD  k +  k  k +      fd ++e ++   k+ p+   + ++n+v+ pen   +++
  MMETSP1061-20121228|33396_1 140 TEPLKDKFGRQHSYLRISLSERCNLRCQYCMPEDGVPLQPAENLLTNTEIMKLATWFN---RQGVNKIRLT--GGEPLLRKDLVELVANLNRLENP--LEQIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSLKPD--KFAKLTRRPPAYFDRVMEAIDDCAKYLPN---RTKINCVVMPENAD-ELQ 314
                  556677777888999999*************999999998889999999999887664...4566777765..***********887776555555..55568*************999999999******98864..444444445688********988877775...4789***9999854.344 PP

>> TIGR04103  rSAM_nif11_3: nif11-class peptide radical SAM maturase 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   4.4e-12   4.7e-10       5     157 ..     152     308 ..     148     331 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 4.4e-12
    TIGR04103   5 syavweitlkcnlacqhcgsrag...qartkelstaealnlvqqlaevgikevtliggeaflrsdwleiakaitkag...mvcglttggygislelaqrmkeagiaavsvsvdglekth.drlrgkkgawksalrtmknlkevgilfgcntqinrlsape 157
                  sy    ++ +cnl cq+c    g   q+ ++ l+ +e ++l   + + g++++ l gge +lr d +e+ + + +        g+tt g  +s +l   + +ag++ v +s+d l+  +  +l  ++ a+    r m+ + +    +   t+in +  pe
  MMETSP1061-20121228|33396_1 152 SYLRISLSERCNLRCQYCMPEDGvplQPAENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLEnplEQIGMTTNGVTLSKHLPD-LVDAGLTHVNISLDSLKPDKfAKLTRRPPAYF--DRVMEAIDDCAKYLPNRTKINCVVMPE 308
                  5555667789********99999666778888999**********************************999887652214689*******9999875.678*************8654145555555543..478888888888888888888887776 PP

>> TIGR02495  NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.0   6.1e-12   6.5e-10      26     151 ..     162     289 ..     156     321 .. 0.74

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 6.1e-12
    TIGR02495  26 CnlkCpyChNellealkeseeveleelleklkr..rkglldgvvitGGEpllqagladllrevkelgl...kvkldtngsn.prvleelleeglvdyvalDvKa.paekyeelvgkeknaakkailksleilk 151
                  Cnl+C+yC  e+  +l+ +e++  ++ + kl     ++ ++ + +tGGEpll ++l++l+++++ l+    ++++ tng    + l +l+++gl  +v + + + +++k+++l+ +  ++    + + +e ++
  MMETSP1061-20121228|33396_1 162 CNLRCQYCMPEDGVPLQPAENLLTNTEIMKLATwfNRQGVNKIRLTGGEPLLRKDLVELVANLNRLENpleQIGMTTNGVTlSKHLPDLVDAGL-THVNISLDSlKPDKFAKLTRRPPAY----FDRVMEAID 289
                  **********998888888876555444444432256779********************999998743348*******752789********5.5666666542577799998888777....344444444 PP

>> TIGR03913  rad_SAM_trio: Y_X(10)_GDL-associated radical SAM protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.6   0.0     7e-12   7.4e-10      20     150 ..     151     290 ..     141     324 .. 0.74

  Alignments for each domain:
  == domain 1    score: 35.6 bits;  conditional E-value: 7e-12
    TIGR03913  20 hvvweitla..cdlkclhcgsraghr...rpdelntaeclevidslaalgtrevsliggeaylrkdwtqlirairdhgm...yvaiqtggrnltpkkleaavdaglngvgvsldglaplh..dkvrnvpgsfdkaldtlrr 150
                  h    i+l+  c+l+c +c    g       + l+ +e +++   + + g  ++ l gge  lrkd  +l+  ++  +     + + t g  l  k+l + vdagl  v +sld l p +     r  p  fd+ ++++  
  MMETSP1061-20121228|33396_1 151 HSYLRISLSerCNLRCQYCMPEDGVPlqpAENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLENpleQIGMTTNGVTL-SKHLPDLVDAGLTHVNISLDSLKPDKfaKLTRRPPAYFDRVMEAIDD 290
                  55556666444*********999964211345577789*********************************9987655311256777777777.589********************964214568889999999987753 PP

>> TIGR03977  rSAM_paired_2: His-Xaa-Ser system radical SAM maturase HsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   9.7e-12     1e-09      29     205 ..     156     335 ..     141     354 .. 0.77

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 9.7e-12
    TIGR03977  29 llvTerCnnlClmCsqpp....kkeddswlleealelikllee.eerelgisGGEPlllgekllelleeikk.klpetelhvLtNGrafsdkefakelaelakekllvgiplyaaaaelHdkivqakga.Feetvegllnlkrl.gikielRvvvtklnleelpelaefiarnlsfveqvalmgl 205
                  + + erCn +C  C   +    +  ++  +  e+++l++ +++   +++ ++GGEPll  ++l+el++++++ + p  ++ + tNG ++s++  + +l ++      v i+l + ++++  k+++++ a F+  +e +  ++++   + ++  vv+ +n++el+ ++e+       ++ +  m +
  MMETSP1061-20121228|33396_1 156 ISLSERCNLRCQYCMPEDgvplQPAENLLTNTEIMKLATWFNRqGVNKIRLTGGEPLLR-KDLVELVANLNRlENPLEQIGMTTNGVTLSKH--LPDLVDAG--LTHVNISLDSLKPDKFAKLTRRPPAyFDRVMEAIDDCAKYlPNRTKINCVVMPENADELQDFVELSRDMPVDIRFIEYMPF 335
                  6689**********6433333277777777788999999999845899********986.578999988876378999*********99864..23333333..345889999***********9998845777888888766426789999999999999999999987776667777776655 PP

>> TIGR03470  HpnH: hopanoid biosynthesis associated radical SAM protein HpnH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.3   0.0   1.2e-11   1.3e-09      36     223 ..     160     356 ..     144     381 .. 0.77

  Alignments for each domain:
  == domain 1    score: 35.3 bits;  conditional E-value: 1.2e-11
    TIGR03470  36 frcnlacaGc....GkidypaeilkrrlsveecleavdecgaPvvsiaGGePllhkeideivrelvark...kfvylctnalllekkldkfepspyltfsvhldGlrekhdksveke..Gvfdkaveaikk.akarGfrvttnttlfededaeevaelldllkelgvdgilisPgyayekapdqdhflkrektkklfr 223
                   rcnl+c+ c    G   +pae l  +  + +  +  +  g   + ++GGePll k++ e+v +l   +     + + tn++ l k+l ++  +    +++ ld l+  + + ++++    fd+++eai   ak    r+ +n+ ++  e+a+e++ +++l +++ vd   i      ++    + fl+ +++++  +
  MMETSP1061-20121228|33396_1 160 ERCNLRCQYCmpedGVPLQPAENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLEnplEQIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSLKPDKFAKLTRRppAYFDRVMEAIDDcAKYLPNRTKINCVVMP-ENADELQDFVELSRDMPVDIRFIEYMPFNDNQWGTNDFLSYRQMQDRIN 356
                  59********44433344566666666666666666788999999*****************99865442226899*****************************99777666666533679*******873667789******9886.67899************99877764433344566677777777776655 PP

>> TIGR03974  rSAM_six_Cys: SCIFF radical SAM maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.2   0.0   5.3e-11   5.6e-09      99     241 ..     154     288 ..      78     322 .. 0.71

  Alignments for each domain:
  == domain 1    score: 33.2 bits;  conditional E-value: 5.3e-11
    TIGR03974  99 lclhvahdcnlackycfaeeGeykge..ralmsaevgkkaldfliensgsrrnlevdffGGePlmnfdvvkelvayarskekekdkkfrftlttnGvllddeviefinkemsnvvlsldGrkevndkl.rktrngkgsydlivpkf 241
                  l + ++  cnl+c+yc+ e+G       + l ++e+ k a  f  ++ g     ++ + GGePl+  d+v+       + ++ ++   +  +ttnGv l  +  + ++  ++ v +sld  k   dk+ + tr     +d++++ +
  MMETSP1061-20121228|33396_1 154 LRISLSERCNLRCQYCMPEDGVPLQPaeNLLTNTEIMKLATWF--NRQGVN---KIRLTGGEPLLRKDLVE----LVANLNRLENPLEQIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSLKP--DKFaKLTRRPPAYFDRVMEAI 288
                  56778899*************7544322445567888877766..444433...58899*****9876664....4444555555666799****************************9874..333044455555567766655 PP

>> TIGR04148  GG_samocin_CFB: radical SAM peptide maturase, GG-Bacteroidales family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.2   1.4e-09   1.5e-07      19     187 ..     154     304 ..     149     319 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 1.4e-09
    TIGR04148  19 llfevtdkCnLkCkYCayGdlYnnyderenkki.dlekakklldylidlwkseanvsvkrevtigFyGGePLlnmelikeivsyieklkieklkfkynlttnaillekyldflvekdf.kLlislDGdkkndsyRvkkegkssfekvvenikklkkkyPeyFekkvrFnsv 187
                  l +   ++CnL+C+YC   d       +  +++ +  + +kl +++ +           +   i   GGePLl  +l++ +   +++l++     +  +ttn + l+k+l  lv+  + ++ islD  k ++  +++++    f++v+e i+   k  P+    + + n v
  MMETSP1061-20121228|33396_1 154 LRISLSERCNLRCQYCMPEDGV---PLQPAENLlTNTEIMKLATWF-NRQGV-------N--KIRLTGGEPLLRKDLVELVA-NLNRLENP--LEQIGMTTNGVTLSKHLPDLVDAGLtHVNISLDSLKPDKFAKLTRRPPAYFDRVMEAIDDCAKYLPN----RTKINCV 304
                  5677889*********988755...333334430334444444443.33333.......2..47778**********98655.45555544..33568************999998873688*****************************988766654....4445555 PP

>> TIGR04167  rSAM_SeCys: radical SAM/Cys-rich domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.5   0.0   2.1e-10   2.3e-08       7     139 ..     151     287 ..     146     318 .. 0.79

  Alignments for each domain:
  == domain 1    score: 31.5 bits;  conditional E-value: 2.1e-10
    TIGR04167   7 letlqvnlgklCnlsCkHCHveagpk...rteemskevveeilellkkskiktlDltGGaPelnpefrelveearklgkevivRsnltileeegledlaeflaekkvevvaslPcyeeenvdk..qRGkgvfeksiea 139
                   + l++ l+++Cnl+C+ C  e g      ++ ++++ + ++ ++++++ ++ + ltGG P l++++ elv+++++l++  +    +t    +  ++l++++++   +v  sl + + ++  k   R    f++ +ea
  MMETSP1061-20121228|33396_1 151 HSYLRISLSERCNLRCQYCMPEDGVPlqpAENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLENP-LEQIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSLKPDKFAKltRRPPAYFDRVMEA 287
                  56899**************999884323367889999999*********************************9988764.466667776677777888888777777777777777776655223555555655555 PP

>> TIGR02493  PFLA: pyruvate formate-lyase 1-activating enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   3.1e-10   3.2e-08      24     198 ..     161     336 ..     155     354 .. 0.69

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 3.1e-10
    TIGR02493  24 GcalrCqyChnpDtwklkggtevtveellkevkkykeflkasg.GGvtvsGGepllqaefvlellkavkkeg..ihtaldtsGflkeltekldellek.tDLvLldikeldeekykkltgve...lektlefakllak.knkpiWiRyvlvPgytDseediealaelvkklkn.vervelLpyh 198
                   c+lrCqyC   D   l+ ++++ ++   +e++k++++++++g   + + GGepll  ++v  + ++ + e+    + + t+G   +l+++l +l++     v + + +l+++k+ klt+++    ++++e +   ak   +++ i  v++P  +D+ +d  +l    ++++  ++ +e +p+ 
  MMETSP1061-20121228|33396_1 161 RCNLRCQYCMPEDGVPLQPAENLLTN---TEIMKLATWFNRQGvNKIRLTGGEPLLRKDLVELVANLNRLENplEQIGMTTNGV--TLSKHLPDLVDAgLTHVNISLDSLKPDKFAKLTRRPpayFDRVMEAIDDCAKyLPNRTKINCVVMPENADELQDFVEL---SRDMPVdIRFIEYMPFN 336
                  6*************999774443333...478889999998863579************9987766665433113566777883..2345455544431344566778999*********9612245666665554441456788999****999877766554...55555447777777775 PP

>> TIGR04038  tatD_link_rSAM: radical SAM protein, TatD family-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0     5e-10   5.3e-08      10     169 ..     154     308 ..     148     332 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 5e-10
    TIGR04038  10 lYlnitnrCtlaCqfCikekekevkgyelklekepsveeviaaikdlkkyeEvvFcGyGepllrlevvkevakaikek.ga.kvRvntdGlanlvhkrnilpelagl.vdalsisLnaqdeetyqkicrpklkedayeavleFikeakklike.vivsaveleg 169
                  l + +++rC+l+Cq+C+ e+   ++  e  l++  ++   +a+  + + ++ +  +G Gepllr ++v  va+  + + +  ++ + t+G +   h    lp+l ++ +  + isL++ ++++++k++r   +   ++ v+e i++++k++++  ++ +v +++
  MMETSP1061-20121228|33396_1 154 LRISLSERCNLRCQYCMPEDGVPLQPAENLLTNT-EIMK-LATWFNRQGVNKIRLTG-GEPLLRKDLVELVANLNRLEnPLeQIGMTTNGVTLSKH----LPDLVDAgLTHVNISLDSLKPDKFAKLTRRPPA--YFDRVMEAIDDCAKYLPNrTKINCVVMPE 308
                  345678*************988887554444332.2333.345578999********.**************98886644459*******876654....566655548999***************998666..8**************98625677777654 PP

>> TIGR04078  rSAM_yydG: peptide modification radical SAM enzyme, YydG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   1.2e-09   1.3e-07       3     117 ..     154     266 ..     152     305 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 1.2e-09
    TIGR04078   3 vvinldarcnascdhccfs.csp..tskealekeeieelveefeknekikvisltGGevlldykfllellkivkslgkdvtlisnGfwglekkkvkeylldlnslgvraltisydeyh 117
                  + i l++rcn +c++c     +p     + l++ ei +l + f+ ++ ++ i ltGGe ll+++   el+  ++ l+     i     +++  +  ++l dl  +g++++ is d  +
  MMETSP1061-20121228|33396_1 154 LRISLSERCNLRCQYCMPEdGVPlqPAENLLTNTEIMKLATWFN-RQGVNKIRLTGGEPLLRKDL-VELVANLNRLENPLEQIG---MTTNGVTLSKHLPDLVDAGLTHVNISLDSLK 266
                  5699************86424551145799**********9996.5789************9875.566666666665544443...2344457788999999999999999999765 PP

>> TIGR04084  rSAM_AF0577: putative peptide-modifying radical SAM enzyme, AF0577 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.0   0.0   4.2e-09   4.4e-07       4     125 ..     159     291 ..     156     350 .. 0.70

  Alignments for each domain:
  == domain 1    score: 27.0 bits;  conditional E-value: 4.2e-09
    TIGR04084   4 tGkcnlkcdycGGsfeeevvpyk......ikydieklkeliekdkdatvifyGGepllnvkfivqv..ldnvra..krfgiqtnGilv.kllpeeywrrlnvvllsidGre..evtdk.yrGkGvykrvvkalrkl 125
                  + +cnl+c+yc    +e+ vp +       + +i kl    +++    + + GGepll+ + +  v  l+ +++  ++ g+ tnG+ + k+lp+ +   l  v +s+d  +  + ++   r    ++rv++a+   
  MMETSP1061-20121228|33396_1 159 SERCNLRCQYCM---PEDGVPLQpaenllTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVanLNRLENplEQIGMTTNGVTLsKHLPDLVDAGLTHVNISLDSLKpdKFAKLtRRPPAYFDRVMEAIDDC 291
                  678********5...444444431112225678889999999*****************99876661133443233789******865278**9998888888888887532244444145556668888777654 PP

>> TIGR04100  rSAM_pair_X: radical SAM enzyme, TIGR04100 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       5.5   5.8e+02      33      67 ..      60      94 ..      57     130 .. 0.73
   2 !   25.4   0.0   1.8e-08   1.9e-06      10     192 ..     154     328 ..     148     333 .. 0.78
   3 ?   -2.2   0.0       5.5   5.7e+02      26      74 ..     358     405 ..     355     441 .. 0.67

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 5.5
    TIGR04100 33 vgdsdslWlehePsleeilaaldkfdlskyeelvf 67
                 v ds+ l ++++P le +   l++ ++++    + 
  MMETSP1061-20121228|33396_1 60 VMDSEILKHKQKPRLEALRRRLREENKNNRSTAIS 94
                 77888899999999999998888888776665555 PP

  == domain 2    score: 25.4 bits;  conditional E-value: 1.8e-08
    TIGR04100  10 lyvnitnkCpcaCtfCirkekdgvgdsdslWlehePsleeilaaldkfdlskyeelvfCGyGePlerldallevakyikek.sklkirintnGladlihgrktaeelkelvdavsislnapdaesylevtrpkfgeksfdallkfakdckklvkevv.ls.vvdviseeeiekskklaeelgiklr 192
                  l + + ++C+ +C +C+ ++   ++ +++l  +      ei++  + f+ + ++++ + G GePl r d +  va+  + +    +i + tnG++    +++  + +   +  v isl+  + +++ ++tr     + fd +++   dc k++++ + +  vv   +++e+++  +l+ ++ + +r
  MMETSP1061-20121228|33396_1 154 LRISLSERCNLRCQYCMPEDGVPLQPAENLLTN-----TEIMKLATWFNRQGVNKIRLTG-GEPLLRKDLVELVANLNRLEnPLEQIGMTTNGVT---LSKHLPDLVDAGLTHVNISLDSLKPDKFAKLTRRPP--AYFDRVMEAIDDCAKYLPNRTkINcVVMPENADELQDFVELSRDMPVDIR 328
                  6678899*************999******9855.....6899999************999.***************9996625568*******86...355666777778889*****************9754..4799***********99964413302222233455555555555555555 PP

  == domain 3    score: -2.2 bits;  conditional E-value: 5.5
    TIGR04100  26 irkekdgvgdsdslWlehePsleeilaaldkfdlskyeelvfCGyGePl 74 
                  +r+e+dg  d++  W+  +P  +   + l +  + +     fCG  + l
  MMETSP1061-20121228|33396_1 358 LRREEDGPNDTT-KWWRLQPNQDHQDQSLGRVGFITSMSEHFCGTCNRL 405
                  577777776654.577888988888888888777666666788866554 PP

>> TIGR03942  sulfatase_rSAM: anaerobic sulfatase maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.0   3.1e-08   3.3e-06       7     192 ..     158     338 ..     153     371 .. 0.71

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 3.1e-08
    TIGR03942   7 vgakCnldCkYCfylekeellekkkkkmseetlekfikeyiasqeaeevefawqGGEPtlaGldfyrkavelqkkyak.gkkis.nslqtngillndeWaeffkennflvGisidGpkelhdkyRvtksgkgsfekvmkalklLkkhkvef.nvLtvvnkknakkakevYkflke..lgskylqFipivee 192
                   + +Cnl+C+YC   +   l   ++   ++e+++  + + ++ q  +  ++   GGEP+l+     + +vel+ + ++ ++ ++   + tng++l ++  ++       v is+d  k  +   ++t++  + f++vm+a++   k+  +   + +vv  +na++ ++  +  ++  ++++++ ++p  ++
  MMETSP1061-20121228|33396_1 158 LSERCNLRCQYCMPEDGVPLQPAENLLTNTEIMK--LATWFNRQGVN--KIRLTGGEPLLR-----KDLVELVANLNRlENPLEqIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSLKP-DKFAKLTRRPPAYFDRVMEAIDDCAKYLPNRtKINCVVMPENADELQDFVELSRDmpVDIRFIEYMPFNDN 338
                  689*********9877755554444444444443..34566664444..55668*****98.....67777777777665544414699**************************9875.4556889999999********99888765541455666677776666655555441145566666666555 PP

>> TIGR03978  rSAM_paired_1: His-Xaa-Ser system radical SAM maturase HsxB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   3.3e-08   3.5e-06      27     202 ..     102     266 ..      84     317 .. 0.66

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 3.3e-08
    TIGR03978  27 seeeleelvekelseseelekeleeklfiseedesaalellasklrkrksflseftalhilvvtlrCnhsCkYCqvsrasedakkfdlseetaekavdlilkspsaslkiEfQGGepllrfdlikkivelaeeknkeekkelefviatnlslltdeileflkekkvlistSlDGpe 202
                  ++++ ++l++  ++e++e ek+ +  ++i++ d+  +    ++ l+ +  + ++  +l  + ++ rCn +C+YC  ++    + + +l ++t    + + ++ ++   ki + GGepllr dl++ + +l + +n    +  ++ ++tn  +l++   + +++  +++  SlD  +
  MMETSP1061-20121228|33396_1 102 KKNDKQNLLSPIVKEEAEAEKRKSLSELIEKLDSLPL---PTEPLKDKFGRQHS--YL-RISLSERCNLRCQYCMPEDGVPLQPAENLLTNTEIMKLATWFN-RQGVNKIRLTGGEPLLRKDLVELVANLNRLENP--LE--QIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSLK 266
                  5555555555555555555555555555554444433...34444444444333..33.246789**********999887776655554443333344443.34567999**************99999888886..33..4667899999999999999999999999998654 PP

>> TIGR04064  rSAM_nif11: nif11-like peptide radical SAM maturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   1.6e-07   1.7e-05      48     230 ..     121     297 ..      79     313 .. 0.70

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 1.6e-07
    TIGR04064  48 daekalrkldllaeerkkavpe...laekeapiatlalfvaqeCnlaCvyCyGkeGe..yGagGlmdsatarkavdWlikasGdvkklglaffGGePllnfplikkvveyakqraeeaekevafsvttnasllddekiaflkenqfkvivsfdGskdiqdrqrpfkdGqgsydavapkikklleavPe 230
                  +++k+l   +l+ + ++  +p+     +   + ++l + ++  Cnl+C yC  ++G     a+ l+++    k   W+ ++   v k++l   GGePll   l+  v +  +      +   +  +ttn+  l +   +++ +   +v +s+d  k ++ ++   +   + +d v++ i++  + +P+
  MMETSP1061-20121228|33396_1 121 EKRKSLS--ELIEKLDSLPLPTeplKDKFGRQHSYLRISLSERCNLRCQYCMPEDGVplQPAENLLTNTEIMKLATWFNRQG--VNKIRL--TGGEPLLRKDLVELVANLNRL----ENPLEQIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSLKPDKFAKLT-RRPPAYFDRVMEAIDDCAKYLPN 297
                  3333333..555555555555433233344567899999*****************73346778888888889999997763..556665..6******98888777665443....334446789***************************98876655432.23344556666666666666665 PP

>> TIGR03906  quino_hemo_SAM: quinohemoprotein amine dehydrogenase maturation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   3.4e-07   3.5e-05      51     213 ..     117     264 ..     101     276 .. 0.75

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 3.4e-07
    TIGR03906  51 laeryspadvadllrelislgivsdaPlapeipprikveeiplktlvlnvntgcnlsctycykedlttPskgkklsletakasvelllkeaaerervavvffGGeplsnlkliralveyaeqraaaaGkkvefslttnatllteevvdflnehrfGltvsidG 213
                   ae+++++++++l+++l sl + ++ Pl+ + +++        + l ++++  cnl c yc  ed    +  ++l  +t +  +   +   + + + ++ + GGepl +  l++ + +      + +    +  +ttn+  l +++ d +++    + +s+d 
  MMETSP1061-20121228|33396_1 117 EAEAEKRKSLSELIEKLDSLPLPTE-PLKDKFGRQH-------SYLRISLSERCNLRCQYCMPEDGVPLQPAENLLTNTEIMKLATWF---NRQGVNKIRLTGGEPLLRKDLVELVANLN----RLENPLEQIGMTTNGVTLSKHLPDLVDAGLTHVNISLDS 264
                  4677788888888888888887766.8888888733.......456678899***********9976656666666666655444333...44556679999*****9988887665443....33334445689*************************996 PP

>> TIGR01290  nifB: nitrogenase cofactor biosynthesis protein NifB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.3   2.2e-06   0.00023      26     147 ..     154     268 ..     126     275 .. 0.66

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 2.2e-06
    TIGR01290  26 mhlavapacniqcnycnrkydcanesrPGvvselltPeqalakvkavaaeikqlsvvGia.GPGdplanakktfatlelvkrevPdvklclstnGlalpevvdrlvdlnvdhvtitinaidPe 147
                  + ++++  cn++c yc       ++  P   +e l+ +  + k    a+  ++  v  i    G+pl   +      +l + e P  ++ ++tnG++l +++ +lvd ++ hv i+++ + P+
  MMETSP1061-20121228|33396_1 154 LRISLSERCNLRCQYCMP-----EDGVPLQPAENLLTNTEIMKL---ATWFNRQGVNKIRlTGGEPLLRKDLVELVANLNRLENPLEQIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSLKPD 268
                  337778888888888864.....445565555655555544443...33333334433321237888776655544444455777778899****************************9997 PP

>> TIGR03972  rSAM_TYW1: wyosine biosynthesis protein TYW1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.5   0.0      0.52        55      46      66 ..     151     170 ..     144     193 .. 0.82
   2 !   17.7   0.0   3.1e-06   0.00032     128     244 ..     209     331 ..     197     339 .. 0.82

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.52
    TIGR03972  46 hrcvqmtpalalCnqrClfCW 66 
                  h  ++++ + + Cn rC +C 
  MMETSP1061-20121228|33396_1 151 HSYLRISLSER-CNLRCQYCM 170
                  66677888888.********5 PP

  == domain 2    score: 17.7 bits;  conditional E-value: 3.1e-06
    TIGR03972 128 GEPtlYpkleelieelkkrgl...ttFlvtnGtl.pevlekl.eeePtqlYvsldapdkelykkiarpvvedaWerileslellksl.ktrtviRitlvkglndkeeeeyaklieka..epdfvE 244
                  GEP l  +l el+ +l++ +     + + tnG++  + l +l ++  t + +sld+   +++ k++r   +++++r++e+++  ++   +rt i + +v   n +e + + +l ++   + +f+E
  MMETSP1061-20121228|33396_1 209 GEPLLRKDLVELVANLNRLENpleQIGMTTNGVTlSKHLPDLvDAGLTHVNISLDSLKPDKFAKLTRR-PPAYFDRVMEAIDDCAKYlPNRTKINC-VVMPENADELQDFVELSRDMpvDIRFIE 331
                  8***************9986434578899***75267898887999*******************987.89**********988777588999976.5666799999999999887511445666 PP

>> TIGR00433  bioB: biotin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   9.4e-06   0.00099      37     145 ..     159     265 ..     149     290 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 9.4e-06
    TIGR00433  37 sGkCpedCkyCaQsahykteiekykllseeevleeakkakeegakrfclvasgrelkekelekvleaveeikeelglevcaslGllseeqakkLkeagvdrynhNlets 145
                  s +C   C+yC        +  +++ll+++e+++ a   +++g++++ l + g+ l +k+l ++++ ++++++ l+    ++ G+  ++++  L +ag+++ n+ l++ 
  MMETSP1061-20121228|33396_1 159 SERCNLRCQYCMPEDGVPLQ-PAENLLTNTEIMKLATWFNRQGVNKIRL-TGGEPLLRKDLVELVANLNRLENPLEQIGMTTNGVTLSKHLPDLVDAGLTHVNISLDSL 265
                  679********988887755.6778*********************987.7899999*****************988888999***********************984 PP

>> TIGR04136  rSAM_FibroRumin: radical SAM peptide maturase, FibroRumin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   4.2e-05    0.0044      94     279 ..     155     321 ..     101     339 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 4.2e-05
    TIGR04136  94 yfilseqcnlackycflgnndkekrknfakelmskeiaekavefflkqlkaveldaedrkavvifyggeplvnyevlkyvvekinslkseekvlknielsmvsnglllsekrllelrelnvs.iaisidgvdeeanamrvdlagnivfskilktldka.kklnvnvslsvtlseetvkdtsdvldlid 279
                   + lse+cnl c+yc+  +       + a++l+++    k   +f +q    +++       + + ggepl+  + +  v++ +n l   e+ l++i   m +ng+ ls k l +l + +++ + is+d ++ +  a ++       f ++++++d + k l     +   +  e   + +d ++l  
  MMETSP1061-20121228|33396_1 155 RISLSERCNLRCQYCMPED--GVPL-QPAENLLTNTEIMKLATWFNRQ----GVNK------IRLTGGEPLLRKDLVELVAN-LNRL---ENPLEQI--GMTTNGVTLS-KHLPDLVDAGLThVNISLDSLKPDKFA-KLTRRPPAYFDRVMEAIDDCaKYLPNRTKINCVVMPENADELQDFVELSR 321
                  4579***********8644..3333.3455555544445555666665....4555......7889******9887666654.6665...5678765..799*****98.579999999975489*****9988776.566678889*******9987245666677777777777777777777765 PP

>> TIGR02351  thiH: thiazole biosynthesis protein ThiH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   6.2e-05    0.0065      64     190 ..     144     272 ..      83     289 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 6.2e-05
    TIGR02351  64 rkrfGntislfiPlYlsnlCankCvYCGfsvenkik..RkkLneeeiekeleaikksglkeiLlvtGesekaagveYieeaiklikkkfsslaievqPleee.eYkklkeaGldavlvyqetYnekkYkk 190
                  + +fG++ s ++ + ls  C+ +C+YC  +    ++   + L++ ei k +   +++g+++i l  Ge     ++  +   ++ + +  +++++    ++ + +   l++aGl  v +  +  +++k++k
  MMETSP1061-20121228|33396_1 144 KDKFGRQHS-YLRISLSERCNLRCQYCMPEDGVPLQpaENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLENPLEQIGMTTNGVTLSkHLPDLVDAGLTHVNISLDSLKPDKFAK 272
                  467998855.999***************99999997225679**************************98877777777778888889999999988888651556888888888888777766666665 PP

>> TIGR03365  Bsubt_queE: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00011     0.012      31      98 ..     161     226 ..     147     256 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00011
    TIGR03365  31 GcdyrcsWcdslfavdssakdeikaltaeevweelkelsgeefltvslsGGnPallkelgeliellke 98 
                   c+ rc++c     v  +  ++   lt  e+++  + +  + ++++ l+GG+P l+k+l el+++l+ 
  MMETSP1061-20121228|33396_1 161 RCNLRCQYCMPEDGVPLQPAEN--LLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNR 226
                  5999*****9888776665554..59999****99****************************98764 PP

>> TIGR02491  NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00047      0.05      23      90 ..     160     227 ..     153     253 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00047
    TIGR02491  23 aGCkhkCegCfnketwklnagkef.tkeeekeiieeledsrlidGltlsGGdPledknveelielvkkv 90 
                    C+ +C+ C  ++   l+  +++ t++e+ ++++ ++ +  ++ + l+GG+Pl  k++ el+  ++++
  MMETSP1061-20121228|33396_1 160 ERCNLRCQYCMPEDGVPLQPAENLlTNTEIMKLATWFNRQ-GVNKIRLTGGEPLLRKDLVELVANLNRL 227
                  56999**********9999877651666777888888888.5677**********99666665555444 PP

>> TIGR04150  quasi_rSAM: quasi-rSAM protein, GG-Bacteroidales system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00053     0.056     124     200 ..     154     228 ..     145     269 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00053
    TIGR04150 124 vtiyldgeceeecdackkvskqilyceeskekleisklkelleqlsknnikeinliggnilkypeleellslleqis 200
                  + i l + c+ +c++c       l +   ++ l  +++++l   ++ + + +i+l+gg+ l  ++l el+  l++ +
  MMETSP1061-20121228|33396_1 154 LRISLSERCNLRCQYCMPEDGVPLQPA--ENLLTNTEIMKLATWFNRQGVNKIRLTGGEPLLRKDLVELVANLNRLE 228
                  568999********9998877666655..556**************************************9999876 PP

>> TIGR03822  AblA_like_2: lysine-2,3-aminomutase-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00047     0.049      96     165 ..     160     227 ..     141     258 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00047
    TIGR03822  96 hvcpvycrfcfrremvGPegl.gvlseaeldaalayiadrpeiweviltGGdPlvlsPrrlaeilkrleai 165
                    c + c++c+  + v  +   + l+++e+    ++  +r+ + ++ ltGG+Pl+   + l e++++l+ +
  MMETSP1061-20121228|33396_1 160 ERCNLRCQYCMPEDGVPLQPAeNLLTNTEIMKLATWF-NRQGVNKIRLTGGEPLLR--KDLVELVANLNRL 227
                  579***********99766540667778877766676.6899***********984..4566666666554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      189  (0.0460751); expected 82.0 (0.02)
Passed Vit filter:                        55  (0.0134081); expected 4.1 (0.001)
Passed Fwd filter:                        39  (0.00950756); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              39  [number of targets reported over threshold]
# CPU time: 0.54u 0.16s 00:00:00.70 Elapsed: 00:00:00.47
# Mc/sec: 1339.55
//
Query:       MMETSP1061-20121228|33398_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2312.68
//
Query:       MMETSP1061-20121228|33401_1  [L=290]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (290 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1822.71
//
Query:       MMETSP1061-20121228|33402_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 652.61
//
Query:       MMETSP1061-20121228|33400_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.18
# Mc/sec: 1041.25
//
Query:       MMETSP1061-20121228|33399_1  [L=433]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-12   42.7   0.1    1.4e-11   41.5   0.0    1.6  2  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
    3.8e-11   41.1   0.4    2.6e-10   38.3   0.0    2.5  3  TIGR00229 sensory_box: PAS domain S-box protein
  ------ inclusion threshold ------
        0.2    7.7   4.3       0.22    7.6   3.0    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family
        1.9    5.4  15.2      0.059   10.4   4.5    2.1  2  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex


Domain annotation for each model (and alignments):
>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.58     6e+02     309     341 ..      50      82 ..      48      89 .. 0.72
   2 !   41.5   0.0   1.3e-14   1.4e-11      24     136 ..     266     378 ..     244     403 .. 0.82

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.58
    TIGR02938 309 gndavaallqqalaageealealekviPqsdae 341
                  g++  ++  q+ala+ge+++++    i q +++
  MMETSP1061-20121228|33399_1  50 GDTVFLSEEQEALASGEQHVTTHASKIVQEQQQ 82 
                  666677778999999999999887777665554 PP

  == domain 2    score: 41.5 bits;  conditional E-value: 1.3e-14
    TIGR02938  24 anilyanaafseitGyakeeviGknesvlsnrttPpevyqalwgslaekkPwaGkllnrrkdgelylaeltvaPvlneaGetthflGmhrdvtelheleqrvanqkllieavv 136
                    i+ya + f ++tGy+ ++++G+n   l    t p+    + +++ +    +  lln r dg  +  ++ +a + ++aG+ t f+G+  +v++ +      ++qk   e   
  MMETSP1061-20121228|33399_1 266 NPIVYASQGFLNLTGYSLDQILGRNCRFLQGPETDPKAVERIRNAIEQGTDLSVCLLNYRVDGSTFWNQFFIAALRDAAGNITNFVGVQCKVSDTYAASVIKEQQKEEEEQAQ 378
                  459*********************************************************************************************98776667766555433 PP

>> TIGR00229  sensory_box: PAS domain S-box protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.9       1.2   1.3e+03      61      80 ..     151     170 ..     133     180 .. 0.53
   2 ?   -3.0   0.0       1.6   1.6e+03      55      90 ..     189     221 ..     179     230 .. 0.51
   3 !   38.3   0.0   2.5e-13   2.6e-10      24     112 ..     265     353 ..     245     364 .. 0.87

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 1.2
    TIGR00229  61 evrerierrlegerepvsee 80 
                  ++ e ++++++++++ + + 
  MMETSP1061-20121228|33399_1 151 KMSEQQKNERRERNREHAKR 170
                  22333333333333333333 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.6
    TIGR00229  55 peedreevrerierrlegerepvseerrvkrkdGse 90 
                   +e+ +++r  i+++   e+  +  e +    dGs 
  MMETSP1061-20121228|33399_1 189 LKEENDKLRDSIRQHVGDEQAEKLLEQK---MDGSN 221
                  4555666666666665544333333333...34444 PP

  == domain 3    score: 38.3 bits;  conditional E-value: 2.5e-13
    TIGR00229  24 eGnilyvNrafeeifGYsaeeliGrnvlelipeedreevrerierrlegerepvseerrvkrkdGseiwvevsvspird.aggelgvvgi 112
                  ++ i+y+++ f  ++GYs ++++Grn + l  +e   +  eri++++e+         ++ r dGs++w +  ++ +rd ag+++ +vg+
  MMETSP1061-20121228|33399_1 265 DNPIVYASQGFLNLTGYSLDQILGRNCRFLQGPETDPKAVERIRNAIEQGTDLSVCLLNY-RVDGSTFWNQFFIAALRDaAGNITNFVGV 353
                  5779********************************************666888889998.**************************997 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.6   3.0   0.00021      0.22     174     298 ..      96     247 ..      56     426 .. 0.60

  Alignments for each domain:
  == domain 1    score: 7.6 bits;  conditional E-value: 0.00021
    TIGR00934 174 vslprksakrddfqeklfsGelvkrdeqd.svhsdqnsedvksdtsadesisslrfdeskekkkstrvpsekfakrresrdidpedlyrsimmlqekheatakirdk......iseanslaaesdeesses........................r 298
                  ++  + ++k+      ++ G  ++      +  ++q+++ + + t++++s ss r  + ++k+++ + + e+ +++r  ++  +e+l++s +ml+e+++   k+rd         e+ +   e++ + s++                        +
  MMETSP1061-20121228|33399_1  96 TTQLHDASKPARAMGTMVAGVTKTTAPVPyKEAPQQRHHLQYAMTKKKSSRSSERKMSEQQKNERRERNREHAKRSRIRKKFLLESLQQSVAMLKEEND---KLRDSirqhvgD-EQAEKLLEQKMDGSNGdmrlttssqgaankvlddpdfsfiK 247
                  444444455555555555544443333220223444455555777777777777777777777777777777778888899999*********996555...555552222221.11111112222222222222222333444444444444440 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   4.5   5.8e-05     0.059      59     202 ..      47     190 ..      36     216 .. 0.61
   2 ?    0.2   1.0     0.073        74      82     111 ..     364     393 ..     337     433 .] 0.48

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 5.8e-05
    TIGR01347  59 ekegdtvesgevlaelee.ssaaaeaasekskeekeekaaakaek..akeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaakeaaakaakaaenaatrseeRvkmtRlrqriaerLleaknstamLt 202
                  + +gdtv   e+   l+  +++++++as+  +e++++ +a  +++     +++ ++a++pa +   + +g+ + +++   k+   +++  + + +kk+s+ +++++k ++++ +++ r  +R++ +R r r    L   ++s+amL 
  MMETSP1061-20121228|33399_1  47 TPDGDTVFLSEEQEALASgEQHVTTHASKIVQEQQQP-QAIPVQNggGFYTTQLHDASKPARAMGTMVAGVTKTTAPVPYKEAPQQRHHLQYAMTKKKSS-RSSERKMSEQQ-KNERRERNREHAKRSRIRKKFLLESLQQSVAMLK 190
                  5689999887777777762344555555554444444.44444443444455556788888888888899988888877776666666655555554333.33333333332.23345555555555444443456667999***96 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.073
    TIGR01347  82 eaasekskeekeekaaakaekakeaaekkk 111
                  +  +e++kee+e+++a+++++a+    +++
  MMETSP1061-20121228|33399_1 364 SVIKEQQKEEEEQAQAQQEAAAAGVVVEHH 393
                  222233333333322222222222222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (433 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       315  (0.0767918); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.25
# Mc/sec: 2286.05
//
Query:       MMETSP1061-20121228|33404_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1018.20
//
Query:       MMETSP1061-20121228|33406_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 974.21
//
Query:       MMETSP1061-20121228|33403_1  [L=861]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (861 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.13s 00:00:00.50 Elapsed: 00:00:00.27
# Mc/sec: 4208.99
//
Query:       MMETSP1061-20121228|33405_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 2534.19
//
Query:       MMETSP1061-20121228|33407_1  [L=534]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (534 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.25
# Mc/sec: 2819.29
//
Query:       MMETSP1061-20121228|33409_1  [L=679]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (679 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.26
# Mc/sec: 3446.95
//
Query:       MMETSP1061-20121228|33408_1  [L=475]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (475 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.25
# Mc/sec: 2507.79
//
Query:       MMETSP1061-20121228|33410_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.18s 00:00:00.58 Elapsed: 00:00:00.33
# Mc/sec: 2383.80
//
Query:       MMETSP1061-20121228|33411_1  [L=355]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (355 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 2342.81
//
Query:       MMETSP1061-20121228|33412_1  [L=220]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (220 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1382.74
//
Query:       MMETSP1061-20121228|33414_1  [L=882]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (882 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 3755.30
//
Query:       MMETSP1061-20121228|33413_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1979.84
//
Query:       MMETSP1061-20121228|33416_1  [L=482]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (482 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2356.25
//
Query:       MMETSP1061-20121228|33415_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2578.19
//
Query:       MMETSP1061-20121228|33417_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1211.90
//
Query:       MMETSP1061-20121228|33420_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 521.96
//
Query:       MMETSP1061-20121228|33419_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-35  120.5   0.0      2e-35  119.7   0.0    1.4  1  TIGR00057 TIGR00057: Sua5/YciO/YrdC/YwlC family protein


Domain annotation for each model (and alignments):
>> TIGR00057  TIGR00057: Sua5/YciO/YrdC/YwlC family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7   0.0   4.8e-39     2e-35      10     201 ..      35     251 ..      24     252 .. 0.84

  Alignments for each domain:
  == domain 1    score: 119.7 bits;  conditional E-value: 4.8e-39
    TIGR00057  10 viekavkllkkgeivvyPTdtvYglgadaldeeAvkrlleikkrpsnkplivlvsdlseiekl........aevkeka.kkLikkflpGpltlvlkkkkeiprlvskkrktvaiRvPdeeialelleelgkPivatSanlsgkesateveeivkeldkkvdliidage.........vkkgeestvvdl..teke....pkvlReGkvs.eeiekvl 201
                   +++  + l+kg++v +PT+tvYglg++ald  A+ +++e+k+rp   pli +v++ +   +l        +  + ka   L ++f+pGpltlv k+++++p++++   +  a R P+++i ++l+ + + Pi+a+San  g+ s+t+  ++ ++l+++   i+++++         ++ g+es+v ++  t ++    + +lR+G+vs ++ie+ l
  MMETSP1061-20121228|33419_1  35 ELDQCGERLRKGGLVSFPTETVYGLGCNALDSSAIIKVFEAKERPLTDPLITHVTENQVAFDLwaadtsdaTSLEGKAlHALCDRFWPGPLTLVAKAAPHVPSILMAGTGFCACRSPQHPISIALIDAAKVPIAAPSANKFGHVSPTRSRHVWDDLQHEDVWIVEEENqesiaetscCQVGVESSVAKIemTTENergrITLLRQGAVSlRDIEECL 251
                  67788899**********************************************98775544411111110334445524699************************9*************************************************99888888887899999999999******7762233222455889******999998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2101.67
//
Query:       MMETSP1061-20121228|33418_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       560  (0.136519); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1536.73
//
Query:       MMETSP1061-20121228|33421_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   13.7   0.0      0.023   12.6   0.0    1.5  1  TIGR00285 TIGR00285: DNA-binding protein Alba


Domain annotation for each model (and alignments):
>> TIGR00285  TIGR00285: DNA-binding protein Alba
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   5.5e-06     0.023      31      80 ..      85     134 ..      74     140 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 5.5e-06
    TIGR00285  31 ikarGraisravdvaeivrnrflpdvkvkeikisteeieseeGreanvsa 80 
                  + ar   +++ +dv e+     +pdv vk+   +t ++ ++ G+e+ v +
  MMETSP1061-20121228|33421_1  85 MHARKDQLQQKLDVLEVKGSHSMPDVTVKQKMSKTGKMVADAGTETKVRT 134
                  67999999**************************************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       308  (0.0750853); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.10s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 1167.60
//
Query:       MMETSP1061-20121228|33422_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2411.00
//
Query:       MMETSP1061-20121228|33425_1  [L=750]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.12s 00:00:00.45 Elapsed: 00:00:00.27
# Mc/sec: 3666.36
//
Query:       MMETSP1061-20121228|33423_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2302.98
//
Query:       MMETSP1061-20121228|33426_1  [L=707]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (707 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 2744.60
//
Query:       MMETSP1061-20121228|33424_1  [L=1187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.14s 00:00:00.64 Elapsed: 00:00:00.41
# Mc/sec: 3821.25
//
Query:       MMETSP1061-20121228|33427_1  [L=984]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (984 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.41
# Mc/sec: 3167.74
//
Query:       MMETSP1061-20121228|33429_1  [L=530]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (530 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2690.55
//
Query:       MMETSP1061-20121228|33430_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2716.78
//
Query:       MMETSP1061-20121228|33428_1  [L=590]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-89  298.8  15.4    2.2e-89  298.3  10.7    1.1  1  TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter
      8e-28   95.8  39.5    9.2e-17   59.4  11.2    3.3  3  TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein


Domain annotation for each model (and alignments):
>> TIGR01013  2a58: sodium-dependent inorganic phosphate (Pi) transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  298.3  10.7   1.1e-92   2.2e-89       1     404 [.      85     493 ..      85     509 .. 0.90

  Alignments for each domain:
  == domain 1    score: 298.3 bits;  conditional E-value: 1.1e-92
    TIGR01013   1 lvllfvfvcsldvlsaafillGakvagallaeilildnplaslvigilvtvllqssststsivvgmvsaglllvllaiplivganigtsvtnaivalmqagdreefrrafigatvadifnsllvlvlLplelatgglekvtllvvlvlgansGeeapellkvltdpltklivqldkliiklia....sllilslikilaktlt...........sLslpeaklt....ieaHifvn..........vgliLlalslvvllarlilivklleslldgqvapvikdvinldtPvlflavtgylallvGaamtfivqsssvftsaltplvgkgvisLerayplvLgsnigttltailaalaseeeklksalqialchvlfnisgivlvyplpitr.lpialakklgedtskerwflvvylvllflliplllfglsla 404
                  l +l++f+ +ld+l ++  ++G+ +ag+l+ +     np+a+l+igil+tv+lqssst+tsivv+ v+ag ++v++ i +i+ganigtsvtn+iva+ q gd++++ raf+gatv+d+fn l v++++p+el t++l ++t l v+ + ++ Ge+ +  +k+  +pltk  +  +k+iik +a    +     +  i++   t            +   ++  +           +           g +  +l l++l  +l  +v +l+++l g  +  i+          +++  gyla+l+G ++t +vqsss+ ts  tp+vg gvi Le++yp++Lg+nigtt+ta+laal+s       a+q+al+h +fnisgi+ +yp+p+ r +p+ +a+ lg+ t   r   +vy+v+ flliplll+glsl+
  MMETSP1061-20121228|33428_1  85 LFFLYFFLFGLDLLGSGAKVMGGCAAGELFGDE---TNPVAGLMIGILATVFLQSSSTTTSIVVSLVGAGSVSVNQGIYMIMGANIGTSVTNTIVAMGQMGDGDQLERAFAGATVHDMFNFLTVAIFFPIELITQYLNRLTTLCVKNFSSKDGEKWVGPIKKFVGPLTKKVIISNKNIIKDVAkgksC---DDFYPIICTDPTnptkstcervgLIGCDKGTDAcpafF------DaeatlkddqvSGVAAFVLGLIILFICLFAMVTMLQKMLLGASTRIIY---------KATNINGYLAMLIGVGVTILVQSSSITTSTFTPIVGLGVIRLEQMYPITLGANIGTTITALLAALLST----TDAMQVALAHLFFNISGILVWYPIPFLRkIPLNAARHLGKATRVWRGVPIVYIVVAFLLIPLLLLGLSLL 493
                  579***************************776...69*************************************************************************************************************************************************96652...44555555544444442222222444444433344442......2334444568668899999**********************8888888.........688999**************************************************************....99**************************89*************************************986 PP

>> TIGR00704  NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   5.9   6.8e-16   1.4e-12      10     102 ..      87     178 ..      76     182 .. 0.86
   2 ?    0.5   0.2     0.041        84     277     301 ..     195     222 ..     186     229 .. 0.56
   3 !   59.4  11.2   4.5e-20   9.2e-17     132     292 ..     324     484 ..     306     494 .. 0.79

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 6.8e-16
    TIGR00704  10 avalllfGmkllrkGvikvageklekvLslstekkllafligiavtaivqsssattvlvisfvaagvlslkraivviLGanvGttltaeival 102
                   + ++lfG++ll +G   + g    ++      +++  ++igi  t  +qsss tt +v+s v ag +s+++ i +i+Gan+Gt++t  iva+
  MMETSP1061-20121228|33428_1  87 FLYFFLFGLDLLGSGAKVMGGCAAGELF-GDETNPVAGLMIGILATVFLQSSSTTTSIVVSLVGAGSVSVNQGIYMIMGANIGTSVTNTIVAM 178
                  456899*********8777777666655.555689999*****************************************************98 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.041
    TIGR00704 277 yfhvlfnvvralvvlPl...tdllarlv 301
                    h +fn  +  +++P+   t+ l rl 
  MMETSP1061-20121228|33428_1 195 TVHDMFNFLTVAIFFPIeliTQYLNRLT 222
                  4456666666666666322234444443 PP

  == domain 3    score: 59.4 bits;  conditional E-value: 4.5e-20
    TIGR00704 132 silGlGlillalellsslvtPltkeelsavvlasvddsvlvdlLiGlvltvilhsssaavaivltlaaeGiiglevalavvlGsnvGstilavlaavaaklaarrvalahvlfnvlGalvv..Lpflhavl.ellekLspkdkaekvayfhvlfnvvralvvlP 292
                   +lGl +++++l  ++ ++  +     + ++    + + ++++LiG+ +t+++ sss++++    ++  G+i le+   + lG+n+G+ti+a+laa  +   a +valah+ fn+ G lv   +pfl  +  +   +L    ka +v     +  +v a++++P
  MMETSP1061-20121228|33428_1 324 FVLGLIILFICLFAMVTMLQKMLLGASTRIIYKATNINGYLAMLIGVGVTILVQSSSITTSTFTPIVGLGVIRLEQMYPITLGANIGTTITALLAALLSTTDAMQVALAHLFFNISGILVWypIPFLRKIPlNAARHLG---KATRVWRGVPIVYIVVAFLLIP 484
                  468898999999999998888877666666666677999********************************************************************************98334677655302222222...3455544444444444445555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (590 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.31
# Mc/sec: 2512.05
//
Query:       MMETSP1061-20121228|33440_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       261  (0.0636275); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1043.34
//
Query:       MMETSP1061-20121228|33448_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 514.06
//
Query:       MMETSP1061-20121228|33454_1  [L=385]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-77  258.1   0.0    1.4e-41  140.2   0.0    2.1  2  TIGR02961 allantoicase: allantoicase


Domain annotation for each model (and alignments):
>> TIGR02961  allantoicase: allantoicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.2   0.0   6.6e-38   2.7e-34      35     172 ..       1     173 [.       1     194 [. 0.89
   2 !  140.2   0.0   3.4e-45   1.4e-41     172     323 ..     204     385 .]     192     385 .] 0.91

  Alignments for each domain:
  == domain 1    score: 116.2 bits;  conditional E-value: 6.6e-38
    TIGR02961  35 ifkeekftekGkwmDGWetRRkreaghDwavvrlgvagvikgvdvDtsfFtGnyapavsieaacleeeeeae................................eaklestkWvellektelkp....sahnlfevsseerftHirlniyPDGGiARlrvyGeavkdlsllaad 172
                  if++++f e+Gk++DGWe+RR+r+aghDw++++l+  + i ++++Dt++FtGn  p++s+e   l+ +++ +                                ea  +  +W ell+ t+l p    +  ++f++++++    +r+n +PDGG+AR+r +G++  d++ +++ 
  MMETSP1061-20121228|33454_1   1 IFDPDAFCEQGKVLDGWESRRRRQAGHDWCLIKLSKRAEIYALELDTAHFTGNNVPKISLEICDLN-APDLSkmvskipgayerllhggvqgtgrlpeevnaaaEAVSNGGNWRELLPLTPLSPgfeqTRMHYFRLDTPAVGNLVRVNYFPDGGLARFRCWGNSLGDVKPATTP 173
                  6899*********************************************************95555.55444599**************************9988899999*************99888899*******************************99998777665 PP

  == domain 2    score: 140.2 bits;  conditional E-value: 3.4e-45
    TIGR02961 172 detvDlaalvnGgvvvaasdahfgkkenliapGraknmgdGWetaRrrd................pGndWvivrLgapg..liekievDtahfkGnapdsvkleaaeleseeeeevit........qsakWkellpktklqpdkehvfese....lakakavthvrltiiPDGGvsRlRlfg 323
                  ++  +l +l  Gg+  a+s++h+g++ +li+p  +k+mgdGWetaR  +                p +dW+i++Lg +g   + k+++Dt+hf+Gn+p+svk+e+++  +e+  +v++         + +W +l+p+++++pd ehvfe +     +++ ++thvr++i+PDGG+sR+R++g
  MMETSP1061-20121228|33454_1 204 TAYKELSSLDEGGIGGACSNKHYGEPWRLIQPTLGKDMGDGWETARHPNrpgilkrqpgstlldtPLSDWAIIKLGCEGssGVAKVILDTKHFRGNFPESVKVEGCYDPDETGTRVVEggydpfeeGNGDWFTLIPRSRMSPDAEHVFERSndqlQNANIPITHVRVSIFPDGGLSRVRIYG 385
                  5567899999************************************99999*************9999********9985569*****************************999999999999988899******************8643343556789*******************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (385 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1693.86
//
Query:       MMETSP1061-20121228|33459_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        2.3    4.9   7.8        2.6    4.7   5.4    1.2  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family


Domain annotation for each model (and alignments):
>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.7   5.4   0.00063       2.6     103     245 ..      60     199 ..      16     206 .] 0.72

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.00063
    TIGR01843 103 eanseeaiefpdillsaedavaelvkeqeslfesrksalraqleslea..qik..qleaeleglqaqlqalrqqleliseelealrkLkekglvsrlelLelereraelqgelaeleaeleklkaeldeleeklqeleqkfreevse 245
                  e++  + i  +       da+ +  +e+++++++r s+l++ + s+++   +k  +++ +  gl+ +l+al +++++++++ e l++   +   +rl+l++le+e+++ + + + +e++ e+  + +++ +++l+   ++       
  MMETSP1061-20121228|33459_1  60 EVDFDDEIANN-------DALIAYSEENNRKLQDRISKLNEAMLSIKKyqSVKsgRNMLREYGLKVELEALHEDIRFLKSKQEGLSETLFDLHLQRLDLIQLEEEQQQENDDDDDDEQRDEEKDHSISHSARNLEDGSNDRSTTFHS 199
                  33333333333.......344444455555555555555555444442112330033344458999*************999998887778888*********************************99999998877776665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       249  (0.0607021); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1235.90
//
Query:       MMETSP1061-20121228|33461_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.86    7.9  15.5        0.6    8.4   5.3    2.4  2  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.7    0.0029        12      11      36 ..      29      54 ..      25      60 .. 0.57
   2 ?    8.4   5.3   0.00015       0.6      17      37 ..      93     113 ..      85     116 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.0029
    TIGR03892 11 isDyadlaevgassgatstsssSsCs 36
                 i+ y+++ae   ++   +t ssSs+s
  MMETSP1061-20121228|33461_1 29 IQSYMGAAENYLAAIKLATQSSSSSS 54
                 66677755555544444444444444 PP

  == domain 2    score: 8.4 bits;  conditional E-value: 0.00015
    TIGR03892  17 laevgassgatstsssSsCsT 37 
                   ++++ s++++s+sssSs+s+
  MMETSP1061-20121228|33461_1  93 TTPTDVSNHESSSSSSSSSSS 113
                  57888899*999999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 736.94
//
Query:       MMETSP1061-20121228|33472_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 443.96
//
Query:       MMETSP1061-20121228|33481_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 961.63
//
Query:       MMETSP1061-20121228|33482_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.23
# Mc/sec: 2628.30
//
Query:       MMETSP1061-20121228|33501_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 507.12
//
Query:       MMETSP1061-20121228|33506_1  [L=414]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (414 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 2185.74
//
Query:       MMETSP1061-20121228|33516_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 505.00
//
Query:       MMETSP1061-20121228|33515_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1365.80
//
Query:       MMETSP1061-20121228|33548_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|33588_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.32
# Mc/sec: 280.48
//
Query:       MMETSP1061-20121228|33596_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|33609_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 697.66
//
Query:       MMETSP1061-20121228|33611_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.38
# Mc/sec: 2320.23
//
Query:       MMETSP1061-20121228|33644_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 725.94
//
Query:       MMETSP1061-20121228|33671_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 416.27
//
Query:       MMETSP1061-20121228|33665_1  [L=480]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (480 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.49
# Mc/sec: 1292.95
//
Query:       MMETSP1061-20121228|33685_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1351.32
//
Query:       MMETSP1061-20121228|33689_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-11   39.6   0.0    3.2e-09   33.8   0.0    2.3  2  TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL
    0.00038   17.0   1.5      0.067    9.6   0.0    3.1  3  TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family


Domain annotation for each model (and alignments):
>> TIGR03300  assembly_YfgL: outer membrane assembly lipoprotein YfgL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.5   0.0    0.0025       5.2     153     200 ..      22      69 ..       7      92 .. 0.72
   2 !   33.8   0.0   1.6e-12   3.2e-09      96     207 ..     203     328 ..     112     333 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.5 bits;  conditional E-value: 0.0025
    TIGR03300 153 sdgrvtaldaetGeklWsyerevpaLtlRgsaspviadgvvlvgfanG 200
                  + g++t ld  tG+ +W+ ++   +   +g + p +a++ vl g  +G
  MMETSP1061-20121228|33689_1  22 TTGHLTVLDPLTGHVKWTQSEWSREEIPKGYSPPQVAHNPVLGGERSG 69 
                  457888899999999998888888877888888888888888887766 PP

  == domain 2    score: 33.8 bits;  conditional E-value: 1.6e-12
    TIGR03300  96 rlsgGvtadgglvlvgtekgevialdaedGkelWrakvs..sevlsaplva...nglvvvrtsdgrvtaldaetGeklWsyerevpaL..tlRgsaspviad.......gvvlvgfanGklvalnl 207
                  +++  + ad++ ++v ++++e i ld++dG+ +W+a+ s  s +l +p ++   + l ++ ++dgrv + d++tG+ lW++  e+  L   ++ +  pv+ad       +v++ g+a+G++va++l
  MMETSP1061-20121228|33689_1 203 PIAPVLSADEKRLFVVSARNETICLDTRDGSRMWKATTSesSPLLGEPKASpdnQRLYMIMSQDGRVNGVDQQTGKVLWNFGCEKDLLpqGVQCDNPPVAADfdlskdgDVLYFGTADGRIVAITL 328
                  666667899**************************988533789999998622256789*********************9777666633588888888764444444468889999999999876 PP

>> TIGR03075  PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.9   0.2    0.0036       7.3     128     183 ..      22      78 ..      18     196 .. 0.62
   2 !    7.7   0.0   0.00013      0.26      72     146 ..     215     283 ..     206     299 .. 0.69
   3 !    9.6   0.0   3.3e-05     0.067      74     135 ..     262     326 ..     252     331 .. 0.67

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0036
    TIGR03075 128 ldaklvaLdaktGkvvWkkkvadakkgytitaaplvvkdkvitGi.sGgEfGvrGkv 183
                  + ++l+ Ld  tG+v W+++    ++     + p v+++ v+ G  sGg +  +  v
  MMETSP1061-20121228|33689_1  22 TTGHLTVLDPLTGHVKWTQSEWSREEIPKGYSPPQVAHNPVLGGErSGGSLKNKNDV 78 
                  567888888889999998888877777777778888888888884367666555555 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00013
    TIGR03075  72 mYvttsyskvyAldaktgkelWkyeaklpedvlpvaccdvvnRGvalydgkvf.lgtldaklvaLdaktGkvvWkk 146
                  ++v ++  +++ ld+++g+++Wk  ++  + +l           ++  +++++ + + d+++  +d++tGkv+W+ 
  MMETSP1061-20121228|33689_1 215 LFVVSARNETICLDTRDGSRMWKATTSESSPLLGE-------PKASPDNQRLYmIMSQDGRVNGVDQQTGKVLWNF 283
                  67777777788888888888887776666555541.......2223334444414577899999999999999975 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 3.3e-05
    TIGR03075  74 vttsyskvyAldaktgkelWkyeaklpedvlpvaccdv....vnRGvalydgkvflgtldaklvaL 135
                  + ++ ++v  +d++tgk lW++  + +      + cd      +  ++  ++ +++gt+d+++va+
  MMETSP1061-20121228|33689_1 262 IMSQDGRVNGVDQQTGKVLWNFGCEKDLLPQG-VQCDNppvaADFDLSKDGDVLYFGTADGRIVAI 326
                  5566779999**********997765544333.345531201334445556679999999999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.11s 00:00:00.43 Elapsed: 00:00:00.32
# Mc/sec: 2235.57
//
Query:       MMETSP1061-20121228|33706_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.28
# Mc/sec: 1406.37
//
Query:       MMETSP1061-20121228|33787_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|33783_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 1414.92
//
Query:       MMETSP1061-20121228|33811_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 716.51
//
Query:       MMETSP1061-20121228|33813_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1127.91
//
Query:       MMETSP1061-20121228|33835_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.24
# Mc/sec: 2694.78
//
Query:       MMETSP1061-20121228|33850_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|33861_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 437.65
//
Query:       MMETSP1061-20121228|33864_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 238.84
//
Query:       MMETSP1061-20121228|33868_1  [L=45]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (45 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 312.61
//
Query:       MMETSP1061-20121228|33860_1  [L=321]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-41  137.9   0.0      3e-40  136.0   0.0    1.8  1  TIGR02182 GRXB: glutaredoxin, GrxB family
    0.00072   17.1   0.0     0.0012   16.3   0.0    1.4  1  TIGR01262 maiA: maleylacetoacetate isomerase


Domain annotation for each model (and alignments):
>> TIGR02182  GRXB: glutaredoxin, GrxB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  136.0   0.0   1.5e-43     3e-40       2     209 .]      80     316 ..      79     316 .. 0.83

  Alignments for each domain:
  == domain 1    score: 136.0 bits;  conditional E-value: 1.5e-43
    TIGR02182   2 LyiYdhCPfCvrarmifGlkniplekivLlnDdeetpirliGkkqvPiLq......keDgralaeslDivkyidelag....eslltdkvseeieewlekvtsylnklllPRlakld.leefatqsarkyft........kkke.asvgnfsall........neteslleeieadleeleklldeesa.vngelsvddilvfplLRnltvvkgiewpskvadyleslsekskveLl 209
                  Ly YdhCPfCvr+r++ G+kni  + + L+nDd  tp+ ++Gkk  Pi++       e+  ++ es+Di+++i++ +     + l     +++++ew+++v+ +l  l  PR++ ++ l+ef   ++r++f+        +k e +++ +fs++l        n+   ++ee++a+l +l++++  +++  +g ls ddi +++ LR++t+++++ewp+ ++ y+++l+e s+v L+
  MMETSP1061-20121228|33860_1  80 LYNYDHCPFCVRVRLALGFKNIKHNLVFLANDDIYTPTSMVGKKISPIMRfpsensDEEDLIMKESMDIIEFIENDERfgptNVLRPASGRTDLKEWQNSVKFLLRTLQRPRYVATGlLPEFQQIDSRHAFIanhplppfDKAEwKEMEDFSQKLsvyadamaNDPTCMIEELNAKLVALDDIVYCDTYcTEGGLSLDDIDLWARLRSITIIADVEWPNGLRRYMDNLAELSDVCLY 316
                  9***********************************************96443322355669***********8766555533344566799********************99987369**********9833333333344435677888776333332224455689******************97899*****************************************997 PP

>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0     6e-07    0.0012       2      76 ..      80     155 ..      79     179 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6e-07
    TIGR01262   2 lYsyfrSsasyRvRiaLaLkgidyesvpvnLlkd..GeqkkeefkalNPqelvPtLkide.gevltqSlAiieyLeet 76 
                  lY+y +    +RvR+aL +k+i+ + v   L +d     ++   k++ P+ + P  + de + ++++S+ iie++e+ 
  MMETSP1061-20121228|33860_1  80 LYNYDHCPFCVRVRLALGFKNIKHNLV--FLANDdiYTPTSMVGKKISPIMRFPSENSDEeDLIMKESMDIIEFIEND 155
                  8999999999************98875..5666633566777789**********998872456789********864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (321 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.11s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1460.98
//
Query:       MMETSP1061-20121228|33893_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|33890_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1913.84
//
Query:       MMETSP1061-20121228|33900_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.5   2.6      0.018   12.4   1.8    1.0  1  TIGR03825 FliH_bacil: flagellar assembly protein FliH


Domain annotation for each model (and alignments):
>> TIGR03825  FliH_bacil: flagellar assembly protein FliH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   1.8   4.4e-06     0.018      29      88 ..      14      74 ..       2      75 .] 0.83

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 4.4e-06
    TIGR03825 29 ketesele.deeqeeeevlekAkeeaaeliekAeaelaavrekieqeraeleeererliqe 88
                 k++ +e++ d+e++++ +le+  +  ++l   A+a + +  +++ +++++lee+ ++l+++
  MMETSP1061-20121228|33900_1 14 KQHPDEAAlDAEAAVQAALESSSSLSSSLSASASASASHGSNQLPSHKSQLEEDLQKLRER 74
                 22233444699**********************************************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 521.01
//
Query:       MMETSP1061-20121228|33899_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 448.76
//
Query:       MMETSP1061-20121228|33903_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 515.39
//
Query:       MMETSP1061-20121228|33912_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 494.96
//
Query:       MMETSP1061-20121228|33904_1  [L=1111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-13   46.0   0.0    5.1e-13   45.6   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      0.005   14.2   0.1     0.0086   13.4   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.6   0.0   2.5e-16   5.1e-13      54     198 ..     893    1035 ..     835    1080 .. 0.85

  Alignments for each domain:
  == domain 1    score: 45.6 bits;  conditional E-value: 2.5e-16
    TIGR03903   54 lFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadves...hakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLR...gepvtaksDlYaWGLivleCLtGkrvvqGasvaevl 198 
                   +    e+ +G+ l + + ++GaL  +e g ++  +L al    + G+ hRD+kP ni++++ d+++     k+ DFG+++L+ gv+              GsP Y aPe      ge    + D+++ G+ +   L G +   G++ +e++
  MMETSP1061-20121228|33904_1  893 VVIELELLDGKDLFDYISSKGALEEEEAGYIVRDILVALDSMSETGIAHRDIKPANILMTTCDESKygkSVKIGDFGMATLV-GVDGL-------VRGRCGSPGYVAPEIFEagpGEGYENRIDIFSAGVTLYLMLCGYEPFYGETEKELI 1035
                   5555799******************************************************9986511167899******96.66663.......33458********9886333777889999999999999999999888888888876 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.2e-06    0.0086      69     136 ..     890     971 ..     883     975 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.2e-06
    TIGR03724  69 peekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk.......ddklyliDfGLg 136
                   ++  i +e ++gk+l d++++k          +++++  ++  + ++gi+h D+ ++Ni+++       ++++ + DfG++
  MMETSP1061-20121228|33904_1 890 SDHVVIELELLDGKDLFDYISSKGAleeeeagYIVRDILVALDSMSETGIAHRDIKPANILMTtcdeskyGKSVKIGDFGMA 971
                  566789999*********9999887888888889999*9**********************976766666667777888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.14s 00:00:00.62 Elapsed: 00:00:00.62
# Mc/sec: 2365.16
//
Query:       MMETSP1061-20121228|33897_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 1514.40
//
Query:       MMETSP1061-20121228|33916_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-77  258.1   0.0      3e-77  257.5   0.0    1.3  1  TIGR01802 CM_pl-yst: chorismate mutase


Domain annotation for each model (and alignments):
>> TIGR01802  CM_pl-yst: chorismate mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  257.5   0.0   7.3e-81     3e-77       1     245 [.      64     349 ..      64     351 .. 0.92

  Alignments for each domain:
  == domain 1    score: 257.5 bits;  conditional E-value: 7.3e-81
    TIGR01802   1 lklenirselirledtiifklleraqfalnkkvyeagavk...eleefdgslleyllketeklhakvrrfksPdeyPffpdkle...kpil.kplkypkilae...aanevnvnekilkvyvedivPkiskkgegeddenyGstavcdveclqalsrrihfGkfvaeakflaepekykklikakdkealeeaitkaaveekvlkrlakkarvyGvdvkvd..................................eeseakidlelvvdlykdyviPltkeveveyllrr 245
                  l+l+ ir +lir+e+tiif l+eraqf +n+ vye+ga      ++  d s+le++l+eteklh+ +rr+ksP+e+ f+p+kl+   + +l + l+y   l +    a +vn+ne +lk y++++vP i+ kg   dde +Gs++  d+ +lqals+r+h+Gkfvae+k+la+pe y++l+ a+d e++++ +t+ ave kvl+r + ka +yG+++                                      +  +k+ + +v  +y+d +iPltk++ev yl+rr
  MMETSP1061-20121228|33916_1  64 LSLDSIRASLIRQEETIIFALIERAQFRQNNVVYEPGASSldsIVNSNDESFLEHMLTETEKLHSGLRRYKSPEEHAFYPEKLRndcEQFLkQDLEYDSGLLSdtgDASKVNFNEILLKKYINKVVPSICAKG---DDEQHGSSVLNDIAVLQALSKRVHYGKFVAESKYLADPEGYQALVDANDAEGVMKLLTNEAVELKVLRRARLKAATYGTEPLLAdlpplygeekttssivaaaaasavvaaleamgdgGDDANKVCPPTVEAIYRDLIIPLTKDIEVAYLFRR 349
                  79***********************************987766678889*******************************999722234551579997655543667889*********************97...8899****************************************************************************9888899*************************99987656666****************************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.11s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1674.90
//
Query:       MMETSP1061-20121228|33925_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.5   0.0      0.012   13.5   0.0    1.1  1  TIGR01003 PTS_HPr_family: phosphocarrier, HPr family


Domain annotation for each model (and alignments):
>> TIGR01003  PTS_HPr_family: phosphocarrier, HPr family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.5   0.0   2.8e-06     0.012      44      75 ..      15      46 ..       5      50 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.8e-06
    TIGR01003 44 akSilgimsLaaeqgtevtvkaegedeeeale 75
                 +  i+++++L+a  g++vt+++ +++++e l+
  MMETSP1061-20121228|33925_1 15 LAAIFSLVVLGAVAGAAVTFRIATKNATESLD 46
                 56799*********************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1061-20121228|33928_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 401.47
//
Query:       MMETSP1061-20121228|33945_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|33946_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 477.67
//
Query:       MMETSP1061-20121228|33935_1  [L=852]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (852 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 2615.23
//
Query:       MMETSP1061-20121228|33955_1  [L=790]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00049   17.7   0.1       0.22    9.0   0.0    2.9  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0022   15.0   0.0      0.027   11.4   0.0    2.1  2  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0081   13.1   0.1      0.013   12.4   0.1    1.2  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364


Domain annotation for each model (and alignments):
>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00016      0.22       1      35 [.     280     313 ..     280     317 .. 0.91
   2 !    4.9   0.0    0.0028       3.8     126     282 ..     426     607 ..     402     610 .. 0.53

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00016
    TIGR02032   1 yDvvvvGaGpaGssaAlrlakkGlrVlllekkelp 35 
                  yDvvv G G+ G + A +l+ +G+rV ++e  +l 
  MMETSP1061-20121228|33955_1 280 YDVVVCG-GTLGIFYAMYLQLQGHRVCVIEAGKLR 313
                  8999998.9*********************98765 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0028
    TIGR02032 126 vevredekkevtakivigAdGakskvakklglkkekrelavalraeveeeveeevdedsvevyidkglv.......pggYgW.vfPkgdgt.anvGvgvls...........eekedlkkklkeflaerp...eklkd.aeevevkgal...iPirr.adektvtgnvllvGDAAglVkPltGeG 282
                  + + e e++ +ta++v +  G+ s+++ + +  ++ + ++  +   +    +e++ +   +++++++++        + Y W  fP g g+  + G+   +           e+  +l + ++++ +  p   +++++ ++++++k  l    P+ r    k   ++vl+vGDA g+  Pl+ +G
  MMETSP1061-20121228|33955_1 426 IDLGE-EEEPITARLVLDCMGNASPISAQQRYGQKADGICCVV-GSCAGG-YEKESNLYGDIIYTNQPIitrknggSNQYFWeAFPVGIGRgKEPGTSDVKttymftymdadENRPSLLQLFEDYWKLLPvyqPSIQNpETDLDIKRILfafFPTYRdSPLKPEFSRVLAVGDASGIQSPLSFGG 607
                  44444.5788888888888888888888776554555555433.334433.33444444455554444444444445556664566554331344544444555555666666666666666666666665554444432222222222222444320233344456888888888888888777 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0     2e-05     0.027       3      59 ..     282     338 ..     281     364 .. 0.85
   2 ?    1.1   0.0     0.028        38     121     144 ..     429     452 ..     415     469 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2e-05
    TIGR01790   3 iviGgGlAglaiAlelakpglrvqlieaapklpfnntygvweddlsdlgladlvehr 59 
                  +v+ gG  g+  A+ l+ +g rv++iea + ++ ++++ +  d+l++l + +++ ++
  MMETSP1061-20121228|33955_1 282 VVVCGGTLGIFYAMYLQLQGHRVCVIEAGKLRGREQEWNISMDELDELMRLNVITQE 338
                  57777888***************************************9966666554 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.028
    TIGR01790 121 caggqriqarlVidargfkalvqy 144
                  +++++ i arlV+d+ g ++ ++ 
  MMETSP1061-20121228|33955_1 429 GEEEEPITARLVLDCMGNASPISA 452
                  577889***********9983322 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.1   9.2e-06     0.013       4      30 ..     282     308 ..     280     312 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 9.2e-06
    TIGR03364   4 vvvGaGivGlahAlaaarrGlkVtvie 30 
                  vvv +G +G+++A+  + +G++V+vie
  MMETSP1061-20121228|33955_1 282 VVVCGGTLGIFYAMYLQLQGHRVCVIE 308
                  466779********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (790 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 3258.48
//
Query:       MMETSP1061-20121228|33961_1  [L=272]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.058   10.1   0.3      0.078    9.7   0.2    1.2  1  TIGR03923 T7SS_EccE: type VII secretion protein EccE


Domain annotation for each model (and alignments):
>> TIGR03923  T7SS_EccE: type VII secretion protein EccE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   0.2   1.9e-05     0.078     250     294 ..      66     110 ..      24     119 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 1.9e-05
    TIGR03923 250 tWrslkgdngylaayrvspeditsetlaqlwalpadetvvtlrlr 294
                  +W s      + +a +++ + it++ ++++w l + + vv+++++
  MMETSP1061-20121228|33961_1  66 QWWSFLLPMSFWTACWLRTKFITKSDFSRWWELHTFHHVVAITFA 110
                  566677778899******************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (272 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1795.05
//
Query:       MMETSP1061-20121228|33976_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 853.53
//
Query:       MMETSP1061-20121228|33972_1  [L=756]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (756 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 2625.89
//
Query:       MMETSP1061-20121228|33982_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2415.40
//
Query:       MMETSP1061-20121228|33999_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1745.19
//
Query:       MMETSP1061-20121228|34013_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|34023_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 763.24
//
Query:       MMETSP1061-20121228|34029_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|34042_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-31  107.8   0.6    1.2e-28   97.8   0.0    2.3  2  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain
    6.1e-08   30.8   0.4    7.8e-07   27.2   0.0    2.3  2  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain
    7.5e-06   23.5   0.6      0.003   15.0   0.4    2.3  1  TIGR02245 HAD_IIID1: HAD hydrolase, family IIID


Domain annotation for each model (and alignments):
>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00027      0.36       3      21 ..     181     199 ..     179     204 .. 0.83
   2 !   97.8   0.0   8.6e-32   1.2e-28      43     160 ..     204     322 ..     200     332 .. 0.93

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00027
    TIGR02251   3 tlvLDLDeTLvhsslkkak 21 
                  tlvLDL++TLv ss  +++
  MMETSP1061-20121228|34042_1 181 TLVLDLENTLVSSSWDRKR 199
                  9************887665 PP

  == domain 2    score: 97.8 bits;  conditional E-value: 8.6e-32
    TIGR02251  43 lkRPyvdeFlerlsklyelvvfTasleeYadkvldildakkkvlsrrlyRescvetngkyvKdlslvkkdlskvviiDnsplsyslqpeNaipiksfis..denDeeLlklipflealrk 160
                   kRP+vd+Fl  ++++ye+v++  s++  ad+v++ ld k++++ +r+yR+ ++ +ng +vKdls+++++++++++iD+  ++++++peN + +k +++  d +D+ L ++ pfl ++  
  MMETSP1061-20121228|34042_1 204 AKRPGVDKFLLDMAQYYEIVLYSPSIDGIADPVVNELD-KQGCIMHRIYRDGTYYHNGVHVKDLSKLNRNINRMIVIDDDLAEVQFHPENVVRVKPYTDptDRTDNTLARITPFLIEIAR 322
                  59************************************.788********************************************************8889*************88433 PP

>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.063        86       8      24 ..     181     197 ..     180     204 .. 0.84
   2 !   27.2   0.0   5.7e-10   7.8e-07      60     153 ..     205     299 ..     198     300 .. 0.89

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.063
    TIGR02250   8 vLvlDlDqtlihttkes 24 
                  +LvlDl++tl+ ++ ++
  MMETSP1061-20121228|34042_1 181 TLVLDLENTLVSSSWDR 197
                  69*********998665 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 5.7e-10
    TIGR02250  60 lRPfvkeflkkvsklyelhvytmgtraYakeiakllDPekklFgdrilsrdest..saktKsLkkllpadesavviiDdredvWkksknLikvery 153
                   RP+v++fl  +++ ye+ +y  +    a  +++ lD ++ +  +ri   +  +    ++K L+kl  + ++++vi Dd ++v  + +n+++v++y
  MMETSP1061-20121228|34042_1 205 KRPGVDKFLLDMAQYYEIVLYSPSIDGIADPVVNELDKQGCI-MHRIYRDGTYYhnGVHVKDLSKLNRNINRMIVIDDDLAEVQFHPENVVRVKPY 299
                  6************************************88876.57887655543447899***********************99999*******9 PP

>> TIGR02245  HAD_IIID1: HAD hydrolase, family IIID
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.4   2.2e-06     0.003      95     184 ..     240     328 ..     176     335 .. 0.60

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 2.2e-06
    TIGR02245  95 ldslamitvqterrgvvdvkplgviwaklkefyskkn.timfddlrrnfvmnpknGlkikpfkkahanrdtdkellkltkylkkiae..ledl 184
                  ld+   i  + +r g++     gv  + l++ + + n  i +dd   +    p+n +++kp+   +    td+ l ++t +l +ia+   +d+
  MMETSP1061-20121228|34042_1 240 LDKQGCIMHRIYRDGTYYHN--GVHVKDLSKLNRNINrMIVIDDDLAEVQFHPENVVRVKPYT--DPTDRTDNTLARITPFLIEIARenHSDI 328
                  44444444444444443333..34445666666555515778888889999***********6..566789**************98224455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.27u 0.10s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2107.27
//
Query:       MMETSP1061-20121228|34056_1  [L=311]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (311 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1415.47
//
Query:       MMETSP1061-20121228|34082_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0088   13.6   0.0      0.015   12.8   0.0    1.3  1  TIGR00537 hemK_rel_arch: putative methylase


Domain annotation for each model (and alignments):
>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   3.7e-06     0.015      20      53 ..      72     105 ..      65     116 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3.7e-06
    TIGR00537  20 nddvleiGaGtGlvairlkekgkkivatdinPfa 53 
                   ++v+eiGaGtG+va         + a d++P  
  MMETSP1061-20121228|34082_1  72 CNHVMEIGAGTGYVAKLFDAADFHVKAFDVAPTK 105
                  578************988776669999**99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1150.94
//
Query:       MMETSP1061-20121228|34087_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 562.69
//
Query:       MMETSP1061-20121228|34088_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|34080_1  [L=724]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (724 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 3295.18
//
Query:       MMETSP1061-20121228|34084_1  [L=600]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (600 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 2474.80
//
Query:       MMETSP1061-20121228|34096_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.38
# Mc/sec: 1708.91
//
Query:       MMETSP1061-20121228|34103_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 1046.14
//
Query:       MMETSP1061-20121228|34113_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|34116_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      209  (0.0509508); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 371.52
//
Query:       MMETSP1061-20121228|34118_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 435.56
//
Query:       MMETSP1061-20121228|34128_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 275.98
//
Query:       MMETSP1061-20121228|34150_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 350.06
//
Query:       MMETSP1061-20121228|34179_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 401.71
//
Query:       MMETSP1061-20121228|34178_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.35
# Mc/sec: 1040.83
//
Query:       MMETSP1061-20121228|34197_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 1027.22
//
Query:       MMETSP1061-20121228|34199_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 538.96
//
Query:       MMETSP1061-20121228|34203_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00029   19.1   0.0    0.00066   18.0   0.0    1.5  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family
  ------ inclusion threshold ------
      0.021   12.5   0.0      0.026   12.2   0.0    1.3  1  TIGR01615 A_thal_3542: uncharacterized plant-specific domain TIGR01615


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.38   7.8e+02      82      94 ..      39      54 ..       9      60 .. 0.51
   2 !   18.0   0.0   3.2e-07   0.00066      21      63 ..      64     108 ..      58     109 .] 0.90

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.38
    TIGR01444 82 s...elaeeseieVev 94
                 +   ++++++++eV++
  MMETSP1061-20121228|34203_1 39 NsvcQQDQTKQFEVPT 54
                 1222222222455665 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 3.2e-07
    TIGR01444  21 aegrviafEPlpdllekleenvklnnlkn..vkllnaAvgdrege 63 
                   +g++++fEP p+++++l + +++ + ++  +++++aAv+++ g+
  MMETSP1061-20121228|34203_1  64 IRGEMHCFEPMPQTASRLAHAAEQLGYDKkgFRVIHAAVSKKIGT 108
                  46799********************999999*********99886 PP

>> TIGR01615  A_thal_3542: uncharacterized plant-specific domain TIGR01615
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   0.0   1.3e-05     0.026       6      32 ..      10      36 ..       6      71 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.3e-05
    TIGR01615  6 kkLrsegydaaiskskWessgdvpage 32
                 ++Lr   yd+++sk +W+++++  +++
  MMETSP1061-20121228|34203_1 10 NTLRMGTYDSSLSKRRWKRAMEHDGQK 36
                 689***************999876654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 496.10
//
Query:       MMETSP1061-20121228|34204_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1170.69
//
Query:       MMETSP1061-20121228|34210_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1163.90
//
Query:       MMETSP1061-20121228|34223_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|34219_1  [L=193]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (193 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.31
# Mc/sec: 821.74
//
Query:       MMETSP1061-20121228|34226_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 646.05
//
Query:       MMETSP1061-20121228|34235_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1647.22
//
Query:       MMETSP1061-20121228|34270_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.2   0.1      0.033   11.1   0.0    1.0  1  TIGR03369 cellulose_bcsE: cellulose biosynthesis protein BcsE


Domain annotation for each model (and alignments):
>> TIGR03369  cellulose_bcsE: cellulose biosynthesis protein BcsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0     8e-06     0.033     151     195 ..       3      47 ..       1      55 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 8e-06
    TIGR03369 151 eaLRaqdElllLklGanlvvasnlpfsrllslieslqgqvfsrpv 195
                   +LR +   + + +Ga +v+ ++l+f+r + ++ ++ g   +r +
  MMETSP1061-20121228|34270_1   3 RILRTETLNIAVGIGAAAVTLASLRFARSQRAVSAVFGSAKARML 47 
                  57888888899999**********************998877766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|34273_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.22
# Mc/sec: 245.98
//
Query:       MMETSP1061-20121228|34286_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 562.39
//
Query:       MMETSP1061-20121228|34300_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   11.9   0.0      0.022   11.8   0.0    1.0  1  TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor
      0.022   10.4   0.0      0.022   10.3   0.0    1.0  1  TIGR02785 addA_Gpos: helicase-exonuclease AddAB, AddA subunit


Domain annotation for each model (and alignments):
>> TIGR02417  fruct_sucro_rep: D-fructose-responsive transcription factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   1.1e-05     0.022      98     147 ..       1      50 [.       1      60 [. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.1e-05
    TIGR02417  98 sddnPdqekkvieallaRqvDalivasslppedeyYqklqneqlPvvalD 147
                  s+ + ++e++      +R+++ ++v + l+++ ++Y++   ++ P+   D
  MMETSP1061-20121228|34300_1   1 SESENENESETTTVTTQRRLELVVVCAMLQSDLDFYERKMGKERPIHGCD 50 
                  567778999999999*********************98888999986655 PP

>> TIGR02785  addA_Gpos: helicase-exonuclease AddAB, AddA subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   1.1e-05     0.022     533     588 ..       5      61 ..       1      68 [. 0.73

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 1.1e-05
    TIGR02785 533 deeaeildkaeqeaevvaekikelikeefkvydkktgeyrpvk.YkdiviLlrsrek 588
                  +e++++++++ ++ ++ +  + ++++++++ y++k+g+ rp++   +iv+L rs+ +
  MMETSP1061-20121228|34300_1   5 NENESETTTVTTQRRLELVVVCAMLQSDLDFYERKMGKERPIHgCDEIVLLPRSTAT 61 
                  2444555555555555566688999*****************845779999999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 455.36
//
Query:       MMETSP1061-20121228|34291_1  [L=682]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (682 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 3000.55
//
Query:       MMETSP1061-20121228|34314_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.21
# Mc/sec: 2382.09
//
Query:       MMETSP1061-20121228|34330_1  [L=893]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-20   69.8   0.0      3e-20   69.3   0.0    1.1  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    6.5e-14   49.1   0.0    3.1e-12   43.5   0.0    2.1  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
      1e-12   45.4   0.0    6.4e-10   36.2   0.0    2.2  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    1.7e-12   44.3   0.1    2.9e-12   43.4   0.1    1.3  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    3.2e-05   20.6   0.1      0.012   12.1   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
     0.0025   13.9   0.0     0.0044   13.1   0.0    1.3  1  TIGR00631 uvrb: excinuclease ABC subunit B


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.3   0.0   4.5e-23     3e-20      14     345 ..     478     841 ..     473     858 .. 0.77

  Alignments for each domain:
  == domain 1    score: 69.3 bits;  conditional E-value: 4.5e-23
    TIGR04121  14 prafQkevleaaeegesglliapTGaGKTlavflpsliela..............akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaek....lfkdlravvvDElHeLlgsk..RGdlleLaLarLrrlapelrvvglsATvgnleeaaevl...lgeek....eekaklvka.kekkalevesllpeeeeklPwaGhlg....lkaleevleeikka...rttlvFtNtRsqaEllfqaLleaneelaleialhHgsl..dkeqRekveaalkagklravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnH 345
                  p a Q++++ a+ +g++ l+ + TG+GKTl+  +p + +l+               + k+  gl vl ++P + La++i    +  +++ gl+++ ++  G t +++ ++ rk++p+i++ Tp  +a l+  k  ek     + +l+++v+DE+ +Ll+ k  R    ++  +  rr  ++l+ v  sAT  ++ +  +v+    +  +    +e+ +lv+  k++++ + +s + +++++    G +     + al++v ++++++   ++ l+F     + +++ ++L +         alh g +  +k  R +v +al++g + +vv+T     G+D   +  vi++  p  ++    R GR + 
  MMETSP1061-20121228|34330_1 478 PLAVQEKTTPAILTGNDVLVGTYTGSGKTLSFLVPLVQRLLwnmvedfdddgsgeISIKNDPGLAVLIVAPGRELASQIVSVARDLLQDTGLTVQLAI-GGTTFKRSLEQIRKRKPNIIVGTPGRIAELVVGKPGEKtgklKIGSLQSLVLDEFDALLEYKahRDPTRAIMQSLKRRHGNSLQSVLCSATATDIMDSSKVVdflRPCFEtamaDEDDVLVTNrKTNGKSSASSPIAAQVSRTVLHGVVNvphkRMALDAVRKILHTEpipQQILIFAENARKVDIVVEKLADRGII---AAALH-GGMgsEKMDRAEVSRALREGYVGIVVATELAARGLDAPLLTHVINLDLPTDASHYAHRSGRCGR 841
                  6788***************************9999999999999999998887655556669*****************************9999887.5788888889999**************9777655443312225889*************98843555555555666778899*********88877666554111333223445555666655155667777888888899999999765222134455555555554333899***98888899999988754433...44565.555225567****************************************************873 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.2   0.0    0.0073         5      17      49 ..     481     513 ..     477     521 .. 0.91
   2 !   43.5   0.0   4.6e-15   3.1e-12     212     324 ..     733     848 ..     711     872 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.2 bits;  conditional E-value: 0.0073
    TIGR01389  17 gqeeiieevldgrdvlavlPtGGGkslCYqvPa 49 
                   qe+   ++l+g+dvl+   tG Gk l + vP 
  MMETSP1061-20121228|34330_1 481 VQEKTTPAILTGNDVLVGTYTGSGKTLSFLVPL 513
                  58899999*********************9995 PP

  == domain 2    score: 43.5 bits;  conditional E-value: 4.6e-15
    TIGR01389 212 kkqlleylkkere.ksGiiYassRkkveelaeaLeskgiealaYhaGlskk..vRaeaqekFleddvkvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaea 324
                   + + + l++e   +  +i+a+  +kv+ + e+L  +gi a+a h+G+ ++   Rae  ++  e  v +vvat     G+d +   +vi ldlP +  +y   +GR GR G++   
  MMETSP1061-20121228|34330_1 733 LDAVRKILHTEPIpQQILIFAENARKVDIVVEKLADRGIIAAALHGGMGSEkmDRAEVSRALREGYVGIVVATELAARGLDAPLLTHVINLDLPTDASHYAHRSGRCGRGGRPGVV 848
                  455555666655457778******************************7652269********************************************************99755 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   0.00074      0.51      15      48 ..     481     514 ..     473     519 .. 0.92
   2 !   36.2   0.0   9.4e-13   6.4e-10     216     323 ..     736     845 ..     713     854 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00074
    TIGR00614  15 vqlevinavlegrdalvvmatGgGksLCyqlpav 48 
                  vq+++  a+l+g+d+lv   tG Gk L + +p v
  MMETSP1061-20121228|34330_1 481 VQEKTTPAILTGNDVLVGTYTGSGKTLSFLVPLV 514
                  899**************************98865 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 9.4e-13
    TIGR00614 216 llkfivkefkgksGiiYClsrkkveqvaaeLqkkglaaaaYhaglees..arkevqkkflrdeiqvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglk 323
                  ++k +++e   +  +i+    +kv+ v ++L  +g+ aaa h g+ ++  +r+ev +   +  + +vvat     G++ p + +vi  +lp +   Y   sGR GR g +
  MMETSP1061-20121228|34330_1 736 VRKILHTEPIPQQILIFAENARKVDIVVEKLADRGIIAAALHGGMGSEkmDRAEVSRALREGYVGIVVATELAARGLDAPLLTHVINLDLPTDASHYAHRSGRCGRGGRP 845
                  44445544444555799999*************************65522799******************9**********************************9976 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.4   0.1   4.3e-15   2.9e-12      32     382 ..     473     851 ..     441     856 .. 0.76

  Alignments for each domain:
  == domain 1    score: 43.4 bits;  conditional E-value: 4.3e-15
    TIGR03817  32 aGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaed..................pratalylaPtkalaadqlravkelee.rdvraaty.dGdtpaeerewirek.aryvltnPdmlhlgilpsharWa..kflralryvvvdechsyrGvfGshvalvlrrlrrlcaryGaePvfllasatsadpaaaasrliGleveavtedgsPrgartvvlwePalle....legengapvrrsasaeaadllad.lvaegvrtltfvrsrrgaevvaleakerlaevdaelaer...vaayraGylae..drreleralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlv 382
                      +p + q +++ +  +G++v v t t sGk+l++l+P++++l  +                  p+ ++l +aP + la+  + + ++l + +++ ++    G t + + e ir++  ++++  P  +   ++ +    +    +++l+ +v+de  +    + +h       ++ l +r+G++   +l+sat++d   +++  +       +  ++   + +v++ +   ++    ++   +a+v r++     ++  + ++ + vr +       +  ++ +e +++++ v ++la+r    aa  +G  +e  dr e+ ral++G +  v+at+    G+d   l  v+    P   + +  ++Gr+Gr g+  +v+ +
  MMETSP1061-20121228|34330_1 473 MNCPNPLAVQEKTTPAILTGNDVLVGTYTGSGKTLSFLVPLVQRLLWNmvedfdddgsgeisikndPGLAVLIVAPGRELASQIVSVARDLLQdTGLTVQLAiGGTTFKRSLEQIRKRkPNIIVGTPGRIAELVVGKPGEKTgkLKIGSLQSLVLDEFDALLE-YKAHRDPTRAIMQSLKRRHGNSLQSVLCSATATDIMDSSKV-VDFLRPCFE--TAMADEDDVLVTNRK-TNgkssASSPIAAQVSRTVLHGVVNVPHKrMALDAVRKILHTEPIPQQILIFAENARKVDIVVEKLADRgiiAAALHGGMGSEkmDRAEVSRALREGYVGIVVATELAARGLDAPLLTHVINLDLPTDASHYAHRSGRCGRGGRPGVVINI 851
                  4567888999999999***************************999887777888888888888888****************999999987757777776515555666778898761688999***999988865544440045789********886543.445544444444455569***************98776654.333222222..222333333333333.2212225566678899999999999876615568899**99999999999999***************9764477888887775589***************************************99999999**********9999866 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   1.8e-05     0.012     284     351 ..     540     604 ..     535     607 .. 0.89
   2 !    6.3   0.0    0.0011      0.72     486     573 ..     774     863 ..     751     871 .. 0.77

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
    TIGR00643 284 GyqvalmaPTeiLAeQhyeklrelleplgievalLtgslkkkkkkelleeiasGeielvvGThallqe 351
                  G  v+++aP   LA+Q +  +r+ll++ g++v+l  g ++ k+    le+i++ + +++vGT   ++e
  MMETSP1061-20121228|34330_1 540 GLAVLIVAPGRELASQIVSVARDLLQDTGLTVQLAIGGTTFKR---SLEQIRKRKPNIIVGTPGRIAE 604
                  778999*******************************999876...588999999*******776665 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.0011
    TIGR00643 486 allhgrlksd..ekeevleeFrekevdiLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLva.epkseeakkR 573
                  a lhg + s+  ++ ev ++ re+ v i+vaT +   G+d P +t ++  d      s      GR gRg + ++++ ++ +pk+++  kR
  MMETSP1061-20121228|34330_1 774 AALHGGMGSEkmDRAEVSRALREGYVGIVVATELAARGLDAPLLTHVINLDLPT-DASHYAHRSGRCGRGGRPGVVINITtSPKERKVPKR 863
                  568998876623678999**************************9988776543.445555557999999999999988866776666666 PP

>> TIGR00631  uvrb: excinuclease ABC subunit B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.5e-06    0.0044     419     519 ..     723     824 ..     694     841 .. 0.81

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.5e-06
    TIGR00631 419 evevrptegqvddlleeirervaknervlvttltkkmaedltdylkelgikvkylhsei..dtlerveiirdLrkgefdvlvGinLLreGlDlPevslvailD 519
                   v+v +++    d + +i ++    +++l+ +   +  + + + l+++gi ++ lh  +  + ++r+e+ r Lr+g + ++v   L   GlD P  + v  lD
  MMETSP1061-20121228|34330_1 723 VVNVPHKRMA-LDAVRKILHTEPIPQQILIFAENARKVDIVVEKLADRGIIAAALHGGMgsEKMDRAEVSRALREGYVGIVVATELAARGLDAPLLTHVINLD 824
                  5555444444.456677888888889999999999999999***************988446799*****************************999998887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (893 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.52u 0.17s 00:00:00.69 Elapsed: 00:00:00.40
# Mc/sec: 2946.66
//
Query:       MMETSP1061-20121228|34354_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.18
# Mc/sec: 549.95
//
Query:       MMETSP1061-20121228|34348_1  [L=247]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (247 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1481.88
//
Query:       MMETSP1061-20121228|34357_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 743.94
//
Query:       MMETSP1061-20121228|34361_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.05   12.0   1.4       0.63    8.5   0.1    2.4  3  TIGR03696 Rhs_assc_core: RHS repeat-associated core domain


Domain annotation for each model (and alignments):
>> TIGR03696  Rhs_assc_core: RHS repeat-associated core domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   0.1   0.00015      0.63      12      53 ..      13      54 ..       3      63 .. 0.81
   2 ?    2.3   0.1     0.013        53      21      45 ..      60      84 ..      52      93 .. 0.77
   3 ?   -0.1   0.0     0.073     3e+02      12      45 ..      89     122 ..      77     123 .. 0.66

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 0.00015
    TIGR03696 12 eaenplrftGqeldeetglyyngaRyYdpelgrFlspDpigl 53
                 +++++ r+ G+ +d+       + R Y  + g++   D +++
  MMETSP1061-20121228|34361_1 13 DLKKKCRWDGKGYDAGRWHESHKDRCYCTWDGKWKDCDDLKK 54
                 38999**********776788899**********99997654 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.013
    TIGR03696 21 Gqeldeetglyyn.gaRyYdpelgrF 45
                 G  +d+  g+++n + R+Y  + g++
  MMETSP1061-20121228|34361_1 60 GRGYDA-GGWHENhEERWYCTWDGKW 84
                 666776.678666257******9999 PP

  == domain 3    score: -0.1 bits;  conditional E-value: 0.073
    TIGR03696  12 eaenplrftGqeldeetglyyngaRyYdpelgrF 45 
                  +++++  + G+ +++     + ++  Y  + g++
  MMETSP1061-20121228|34361_1  89 DLKKKCSWDGEDYEAGKWHEDQKQKCYCTWDGKW 122
                  3777888888888876555677777777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 779.36
//
Query:       MMETSP1061-20121228|34365_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 472.38
//
Query:       MMETSP1061-20121228|34378_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|34377_1  [L=843]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   15.7   0.3       0.11    9.0   0.0    3.0  4  TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL


Domain annotation for each model (and alignments):
>> TIGR03300  assembly_YfgL: outer membrane assembly lipoprotein YfgL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.8   0.0       0.2   8.2e+02     321     341 ..     346     366 ..     342     368 .. 0.83
   2 ?   -3.4   0.0      0.15   6.2e+02     251     267 ..     491     507 ..     487     541 .. 0.45
   3 !    3.1   0.0    0.0016       6.6     109     134 ..     628     653 ..     612     678 .. 0.78
   4 !    9.0   0.0   2.6e-05      0.11     290     339 ..     706     755 ..     694     772 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.8 bits;  conditional E-value: 0.2
    TIGR03300 321 kyvvvgDfeGylhlLdredGs 341
                   +vvv D++ ++h++d   Gs
  MMETSP1061-20121228|34377_1 346 LAVVVKDTSKFMHFFDDVVGS 366
                  5799**********9998886 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 0.15
    TIGR03300 251 GrvaaldlssgrvlWkr 267
                  G ++ald+ssgr+  + 
  MMETSP1061-20121228|34377_1 491 GGMVALDASSGRISQQY 507
                  33344444444333333 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.0016
    TIGR03300 109 lvgtekgevialdaedGkelWrakvs 134
                  ++g+ek  v+al +e+G+ +W +++ 
  MMETSP1061-20121228|34377_1 628 ALGNEKDGVVALGTEEGESVWFTSLP 653
                  68999999999999999999988774 PP

  == domain 4    score: 9.0 bits;  conditional E-value: 2.6e-05
    TIGR03300 290 kvvaldrssGselWkndeLknrkLtapallgkyvvvgDfeGylhlLdred 339
                  kv  ld+++G+ lW+ + L +++++++a++++  v++ + G + l+ +++
  MMETSP1061-20121228|34377_1 706 KVQCLDSEDGELLWTYAGLDEHNISKFAVVSGEAVLVANGGSVALIGTQT 755
                  68899*************************99999999999998887776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (843 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       337  (0.082155); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.12s 00:00:00.61 Elapsed: 00:00:00.43
# Mc/sec: 2587.60
//
Query:       MMETSP1061-20121228|34387_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.9   0.0      0.003   15.1   0.0    1.4  1  TIGR01659 sex-lethal: sex-lethal family splicing factor
     0.0063   13.9   0.0     0.0085   13.5   0.0    1.3  1  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.5e-06     0.003     103     189 ..     133     224 ..     114     251 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.5e-06
    TIGR01659 103 trasgtnlivnylpqdmtdrelyalfrtigp.intcrimrdykt.g...ysfgyafvdfaseadsqraikslngitvrnkrlkvsyarpgge 189
                   ++++  l +  lp d td +l  lf   g  + + r++ d+ t g      g afvd         a+k     ++r +rl v   r  ge
  MMETSP1061-20121228|34387_1 133 KSQQNYSLHITQLPYDSTDFDLRKLFAEHGCtVTSIRLVYDHDTdGrktLFRGVAFVDVLDSQSYETALKLHHKTSIRGRRLNVRPCRSKGE 224
                  45667789999*****************99725668****99884222134599****999999999******************9999998 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   4.2e-06    0.0085      88     149 ..     136     202 ..     121     296 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 4.2e-06
    TIGR01661  88 kganlyvsGlPktmtqkeleslfspfGkiits.rilsdnvtd....lskGvGfirfdkreeadraik 149
                  ++  l+++ lP   t  +l +lf+++G  +ts r++ d+ td    l +Gv f+     +  ++a+k
  MMETSP1061-20121228|34387_1 136 QNYSLHITQLPYDSTDFDLRKLFAEHGCTVTSiRLVYDHDTDgrktLFRGVAFVDVLDSQSYETALK 202
                  556799999*********************9978889999999998999****98766555566555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       417  (0.101658); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 1527.30
//
Query:       MMETSP1061-20121228|34407_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|34428_1  [L=663]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 3017.54
//
Query:       MMETSP1061-20121228|34445_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 418.92
//
Query:       MMETSP1061-20121228|34449_1  [L=544]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (544 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.12s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 1709.57
//
Query:       MMETSP1061-20121228|34469_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|34477_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.26
# Mc/sec: 269.05
//
Query:       MMETSP1061-20121228|34451_1  [L=1255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
          0 1612.6   0.0          0 1612.4   0.0    1.0  1  TIGR01235 pyruv_carbox: pyruvate carboxylase
   5.4e-154  511.1   0.2   7.8e-154  510.6   0.2    1.2  1  TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   7.3e-151  502.0   2.9   1.2e-140  468.2   0.1    2.0  2  TIGR02712 urea_carbox: urea carboxylase
   1.3e-130  434.5   0.0   1.9e-130  433.9   0.0    1.3  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    1.4e-18   63.7   0.0    2.3e-18   63.1   0.0    1.2  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
    6.4e-13   46.2   0.0    1.2e-12   45.2   0.0    1.3  1  TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase
    5.2e-11   40.2   0.0    1.1e-10   39.1   0.0    1.4  1  TIGR02146 LysS_fung_arch: homocitrate synthase
    1.7e-10   38.4   0.1    3.8e-10   37.3   0.1    1.5  1  TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
    1.9e-10   38.4   0.0    1.4e-09   35.6   0.0    2.3  3  TIGR02660 nifV_homocitr: homocitrate synthase
    1.4e-09   34.9   5.4    1.4e-09   34.9   3.7    1.4  2  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    3.2e-08   30.9   0.0    8.6e-08   29.5   0.0    1.7  1  TIGR02090 LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
      6e-08   31.1   0.7    1.8e-07   29.6   0.5    1.9  1  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
    7.6e-08   29.1   0.1    7.6e-07   25.8   0.0    2.1  2  TIGR00973 leuA_bact: 2-isopropylmalate synthase
    3.5e-07   27.3   0.2    5.5e-07   26.6   0.1    1.2  1  TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2
    1.9e-05   21.0   0.0    3.1e-05   20.3   0.0    1.2  1  TIGR00977 LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
    2.1e-05   21.6   0.3      7e-05   19.9   0.0    2.0  2  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX
    5.4e-05   20.5   0.0    0.00016   18.9   0.0    1.6  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
    5.6e-05   19.1   0.1    8.6e-05   18.5   0.0    1.1  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
     0.0002   18.5   0.9     0.0002   18.5   0.6    1.5  2  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
     0.0012   15.7   1.8       0.15    8.8   0.0    2.2  2  TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit
     0.0018   15.1   2.6     0.0055   13.5   0.2    2.2  2  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR01235  pyruv_carbox: pyruvate carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ! 1612.4   0.0         0         0       2    1143 .]      97    1253 ..      96    1253 .. 0.96

  Alignments for each domain:
  == domain 1    score: 1612.4 bits;  conditional E-value: 0
    TIGR01235    2 vlvanrgeiairvfraanelgirtvavyseedklslhrqkadeaylvGeggqlaPveaylsideiirvakknkvdaihPGyGflsensefadkvekaGivfiGPkaevldqlGdkvaarelaikagvPvvPgtdgpvetleevldfakaiGyPvilkaayGGGGrGmrvvrseeevadaferakseakaafGndevyveklierpkhievqllgdkaGnvvhlferdcsvqrrhqkvvevaPakslsrevrdklaeaavklakevnyinaGtveflvdedtkfyfievnpriqvehtvteeitGidivkaqikvaeGaslpskklglpeqediktkGyaiqcrvttedPakdflPdtGrievyrsaeGfGvrldggnayaGaiispyydsllvkvsasastleeaaakmvralrefrirGvktnipfleavlenekflegsydtsfidetPelfqlvks........kd..r....atklltyladvtvnGsi.elkkklkples...kprvvkleadqspvkrGtkqildekGpeefakavreqksvlltdttfrdahqsllatrvrthdlakiapttahalaelfslevwGGatfdvalrflkedPwerledlrkevPnilfqmllrganavgytnyPdnvvkkfvkqaaqsGidifrvfdslnylenlklgvdavkeagkvveaaicytGdildkakkkydlkyytelaeelekaGahilaikdmaGllkPaaaklliaalrekt.dlPihlhthdtsGaavasvlaaveaGvdvvdvavdslsGltsqPslgalvaaleGseldtglnveevrelsayweevrklyaafesdlkspdaevylheiPGGqytnlkeqakslGlgdrweevkkayreanqllGdivkvtPsskvvGdlalfmvsnkltaddvvekaeeldfPdsvvellkGaiGqPhgGfPeklrkkvlkd..ekkltvrPGellepldlekikkdlkeklerevsdldvvsyalyPkvfedylkaresyGdvsvldtraflsglkvgeeleveiekGktliikllavgetksdgerevyfelnGqlrkvkvkdrsakaevavrskadkgnkahvgapmpGvvievkvkaGskvekGdvlvvleamkmetvvqapkdGtvkevlvkdGekidaedlllvle 1143
                   ++ anr+eia+r++raa+e++  tv +y +ed+ s hr+ ad ++l+ + ++ +P+ ayl+id+ii++ak+++vdaihPGyGflse++efa+++ +aGivf+GP+ e l+++ dk +ar++ai+a+vPvvPg+dg  et+e+v++f++ iG+Pvi+ka++GGGG+Gmrvvr++e++   fe a+sea a+fG+++v++e++++rp+hievq++gd  Gnvvhl+erdcsvqrrhqkv+e+aPa +l++e+r++l e+av+l+ ++ y+naGtveflvd + + yfievnpriqvehtvtee+tGid+v+aq+k+a+Gasl+  ++gl  qe+i  +G aiqcrvtte+P++df PdtG i  yr + G Gvr+dg   y+G  i+py+ds++vk +  +s+++ea+a+m r l+e rirGvktnipfl++ l+++ f +g+++t fide+Pel q + s        +   r    +++ l+yla+++vnG++ el   + +l +   ++ +v +  + +++k+ ++ il ++Gpe +akavre+k+++++dtt+rdahqsllatr+rt +l + a++t + +++ fsle+wGGatfdva+rfl+e+Pw+rle+lr++ P+++fqmllrganavgytny dnvv kf+ qa++sGid+frvfdslnylenlklgvda+ +ag+ ve +++ytGd+ d++k ky+l+yy++l +el+ +G+h laikdmaGll P+a+k+l++alre+  d+Pih+hthdt+G++vas+laa+eaG+d+vd a+d++sG+tsqPs+ga+ a l+Gseldtgl+++++  l++ywe+vr lya+fes+  s++++vy+heiPGGqytnl +q+k+lGl ++w e+k+ y++an +lGdi kvtPsskvvGdla+fmv ++l  +dv ++ae l fPdsvv++l+G+iG P+gGfPe+lr+kvlk+   +++++rPG+ l++ d+e++++ l  ++ + + ++d++syalyP+vf+++++ +  yGdv++l+t++fl ++kvg+e++ ++ kG + +ikl+a+ + +++g r v fe+nG++  + v+d+sa +e a+r+ka  g +  vg+pmpGvv+ v+vk+G+++ +Gd+++ l+amkmet + +  +G+vk+vlv+ G+k+d++dll+++e
  MMETSP1061-20121228|34451_1   97 IMAANRAEIAVRIMRAATEMNAGTVGIYVHEDRYSQHRWGADRSFLLDKDADATPISAYLDIDQIIKIAKESDVDAIHPGYGFLSESPEFAQACADAGIVFVGPTVENLNRFADKTSARQAAIDADVPVVPGSDGALETKEDVVEFVEGIGLPVIIKASMGGGGKGMRVVRKMEDLVPFFESASSEALASFGDGSVFIERFVDRPRHIEVQIIGDGTGNVVHLWERDCSVQRRHQKVIEMAPAFTLPDELREQLHEYAVRLTSQAKYKNAGTVEFLVDSELRPYFIEVNPRIQVEHTVTEEVTGIDLVQAQMKIAAGASLE--DVGLI-QENISARGVAIQCRVTTENPERDFSPDTGTISLYRNSAGCGVRMDG-VGYSGLKITPYFDSMIVKYTVRGSSFKEATARMSRVLQECRIRGVKTNIPFLLNCLQHDDFKNGELTTAFIDEHPELKQTSTSywnfanqfQAdpRklgsSERRLRYLANLAVNGHPtELGADPTKLATsitSAVPVPVIPASTSEKKSIRSILLNEGPEAMAKAVRENKGLMIMDTTWRDAHQSLLATRMRTQELERCAEATNEVMKNAFSLEMWGGATFDVAMRFLHECPWKRLESLREKTPDVPFQMLLRGANAVGYTNYADNVVYKFCDQAQKSGIDVFRVFDSLNYLENLKLGVDAAGKAGGFVEGTMSYTGDVADPSKGKYNLEYYMNLGRELVDMGSHSLAIKDMAGLLTPRASKMLVSALREEFpDIPIHVHTHDTAGSGVASMLAAAEAGADIVDGAMDAMSGMTSQPSIGAIAANLKGSELDTGLDMDQLAPLNTYWENVRSLYAPFESGQLSGSSDVYQHEIPGGQYTNLLFQSKQLGLTEKWPEIKRKYAQANIVLGDIPKVTPSSKVVGDLAQFMVAQDLQPQDVLNQAETLAFPDSVVNYLRGDIGVPPGGFPEPLRSKVLKGrgLEPVEGRPGKFLKEYDFEQERESLLANYGTRITEKDLLSYALYPNVFNEWKEYESVYGDVDILPTHVFLNPMKVGQEIDLDLGKGLSRVIKLVAIQDVDENGSRDVLFEVNGEPHYMSVTDNSAAVEGAIREKA--GAPGTVGSPMPGVVVGVQVKVGDEISEGDTVATLSAMKMETSIPSTYSGVVKRVLVNVGDKVDGDDLLVEIE 1253
                   899******************************************************************************************************************************************************************************************************************************************************************************************************************************..*****.*********************************************6.68**************************************************************************97754432111111222111111145669**********65156555555443111333444445666679********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************995569***********************************************************************************************************************************9..57899****************************************************************987 PP

>> TIGR00514  accC: acetyl-CoA carboxylase, biotin carboxylase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  510.6   0.2    4e-156  7.8e-154       2     446 ..      94     544 ..      93     547 .. 0.97

  Alignments for each domain:
  == domain 1    score: 510.6 bits;  conditional E-value: 4e-156
    TIGR00514   2 ldkilianrGeialrilrackelGiktvavystadkdalhvkladeavciGeaasa...ksylnipniiaaaeitgadaihpGyGflsenadfaelveesgltfiGpsaeairlmGdkvsaketmkkagvpvvpGsdGlvedveeaveiakeiGypviikataGGGGrGlrvvreedelvkslkaakaeakaafnndgvylekfienprhveiqvladkyGnvvylgerdcsiqrrkqklleeapspaltselrkkiGeaavkaaksigytgaGtveflldkegefyflemntriqvehpvtemvtgvdlikeqirvakGekls...lkqedvklkGhaiecrinaedpsknflpspGriksylppgGlgvrvdsavysgyavppyydsliaklivygktreeaiarmkralkeliieGikttidfhkliledekfkkgevdikylekkee 446
                  ++ i+ anr eia+ri+ra+ e+   tv +y + d+  +h   ad ++ + + a a    +yl+i +ii +a+  ++daihpGyGflse  +fa+ ++++g++f+Gp+ e ++   dk+sa++++ +a+vpvvpGsdG +e++e+ ve  + iG pviika+ GGGG+G+rvvr+ ++lv  ++ a +ea a+f++ +v++e+f+++prh+e+q+++d  Gnvv+l erdcs+qrr+qk++e ap+ +l +elr+++ e av+++ ++ y+ aGtvefl+d e + yf+e+n riqveh+vte+vtg+dl+++q+++a+G  l+   l qe++  +G ai+cr+ +e+p+++f p  G i+ y +++G gvr+d+  ysg ++ py+ds+i k  v g++ +ea arm r l+e+ i G+kt+i+f    l++++fk+ge+ +++++++ e
  MMETSP1061-20121228|34451_1  94 FKNIMAANRAEIAVRIMRAATEMNAGTVGIYVHEDRYSQHRWGADRSFLLDKDADAtpiSAYLDIDQIIKIAKESDVDAIHPGYGFLSESPEFAQACADAGIVFVGPTVENLNRFADKTSARQAAIDADVPVVPGSDGALETKEDVVEFVEGIGLPVIIKASMGGGGKGMRVVRKMEDLVPFFESASSEALASFGDGSVFIERFVDRPRHIEVQIIGDGTGNVVHLWERDCSVQRRHQKVIEMAPAFTLPDELREQLHEYAVRLTSQAKYKNAGTVEFLVDSELRPYFIEVNPRIQVEHTVTEEVTGIDLVQAQMKIAAGASLEdvgLIQENISARGVAIQCRVTTENPERDFSPDTGTISLYRNSAGCGVRMDGVGYSGLKITPYFDSMIVKYTVRGSSFKEATARMSRVLQECRIRGVKTNIPFLLNCLQHDDFKNGELTTAFIDEHPE 544
                  57899********************************************986554422279*******************************************************************************************************************************************************************************************************************************************************************876533399*********************************************************************************************************************99865 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  468.2   0.1    6e-143  1.2e-140       1     442 [.      94     542 ..      94     550 .. 0.95
   2 !   34.3   0.2   6.1e-12   1.2e-09    1133    1200 ..    1185    1252 ..    1143    1253 .. 0.86

  Alignments for each domain:
  == domain 1    score: 468.2 bits;  conditional E-value: 6e-143
    TIGR02712   1 fkkvlianrGeiavriirtlkklgirsvavysdadkasqhvkdadeavalge...ataaesylkidkileiakktgaeaiiPGyGflsenaafaeaceaagivfvGPtpeqlrklGlkhtarelaeaagvPllpGt.gllesleealeaaeeigyPvmlkstaGGGGiGlqkvdsaeeleeafesvkrlgesffsdagvflekfvekarhvevqilGdgkGkvvalgerdCslqrrnqkvveetPaPnlpeevrekllkaaeklaeavnyrsaGtvefiydekrdefyflevntrlqvehpvteavtgldlvewmvrlaageapdldelkve..kprGaaiearvyaedPakdfqPspGlltevkfPed..vrvdtwvekGtevsaeydPmlakiivhgkdreealeklkkaleetkvaGivtnldylksivssevfrkakvstrllekl 442
                  fk+++ anr eiavri+r++ +++  +v +y + d++sqh   ad++  l++   at   +yl+id+i++iak+++++ai+PGyGflse+ +fa+ac++agivfvGPt e+l+++  k +ar+ a  a+vP++pG+ g le+ e+ +e  e ig+Pv++k++ GGGG G++ v++ e+l   fes    + ++f+d  vf+e+fv++ rh+evqi+Gdg+G+vv l erdCs+qrr+qkv+e +Pa  lp+e+re+l++ a++l+++ +y+ aGtvef+ d++  + yf+evn r+qveh vte+vtg+dlv+  +++aag++ +   l +e  ++rG+ai+ rv +e+P +df P +G+++  +      vr+d+    G+++++++d m+ k  v g++ +ea +++++ l+e ++ G++tn+ +l + ++++ f++++ +t+++++ 
  MMETSP1061-20121228|34451_1  94 FKNIMAANRAEIAVRIMRAATEMNAGTVGIYVHEDRYSQHRWGADRSFLLDKdadATPISAYLDIDQIIKIAKESDVDAIHPGYGFLSESPEFAQACADAGIVFVGPTVENLNRFADKTSARQAAIDADVPVVPGSdGALETKEDVVEFVEGIGLPVIIKASMGGGGKGMRVVRKMEDLVPFFESASSEALASFGDGSVFIERFVDRPRHIEVQIIGDGTGNVVHLWERDCSVQRRHQKVIEMAPAFTLPDELREQLHEYAVRLTSQAKYKNAGTVEFLVDSEL-RPYFIEVNPRIQVEHTVTEEVTGIDLVQAQMKIAAGASLEDVGLIQEniSARGVAIQCRVTTENPERDFSPDTGTISLYRNSAGcgVRMDGVGYSGLKITPYFDSMIVKYTVRGSSFKEATARMSRVLQECRIRGVKTNIPFLLNCLQHDDFKNGELTTAFIDEH 542
                  899***********************************************97332445579**************************************************************************95699*********************************************************************************************************************************************876.68*********************************9988776666555788***********************998777665566**************************************************************************99975 PP

  == domain 2    score: 34.3 bits;  conditional E-value: 6.1e-12
    TIGR02712 1133 vaveselagrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalvvl 1200
                    +v s++ g +  v+v+vgde+++gd++ ++ amkme+++ ++ +G+vk++lv+ Gd+v+  d+lv +
  MMETSP1061-20121228|34451_1 1185 GTVGSPMPGVVVGVQVKVGDEISEGDTVATLSAMKMETSIPSTYSGVVKRVLVNVGDKVDGDDLLVEI 1252
                   468999******************************************************99999877 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.9   0.0  9.9e-133  1.9e-130       1     582 []     642    1249 ..     642    1249 .. 0.85

  Alignments for each domain:
  == domain 1    score: 433.9 bits;  conditional E-value: 9.9e-133
    TIGR01108    1 itdvvlrdahqsllatrlrteDmLpileklDkv..gywslevWGGatfDaclrfLkedPWerLrelkkalkntklqmLLrGqnllGyrhyaDDvvekfvkkavenGldvfrifDalnDarnlkkaieavkkhgahvqgalsyt...isPv...htlekylelakellelgvDsiaikDmaGlLtPkaayeLvsalkkeve.lpvelhshattglaelallkaieaGvdviDtaisslsagtshpatealvaalretgydtgldiellkeiadyfrevrkkyakfeselkgiDsrilvaqvPGGmlsnlesqLkeqnaldkldevleeiprvreDlGyiPLvtPtsqivGtqavlnvltGeryktit.........ketkdlvkGeyGrtPapikaelvkkvlgde.kailevrPadllep.eldklraevreagaekesdeDvLlvalfpevgkkflenren.........pvafeeaveekkieeeavkvvakaveeaasavytvevegk.aeevkvseskevskleasaaaaksagtvaakakastdvtaplaGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavgevl 582 
                   i d++ rdahqsllatr+rt+++   +e+ ++v  + +sle+WGGatfD+++rfL+e PW+rL  l+++ ++ ++qmLLrG n +Gy +yaD+vv kf ++a + G+dvfr+fD+ln   nlk  ++a+ k g +v+g++syt     P    + le+y++l++el+++g  s+aikDmaGlLtP+a+  Lvsal++e++ +p+++h+h t+g   +++l+a+eaG+d++D a+ ++s+ ts+p+  a+ a l++ + dtgld+++l  ++ y ++vr  ya fes      s +  + +PGG ++nl+ q k+  +++k  e+ +   +    lG iP vtP s++vG  a + v    + + +            + ++++G  G +P+   + l+ kvl++   +++e rP+  l++ ++++ r+ + +   ++ +++D+L++al+p+v +++ e  +           v +++++  ++i        +k+++ + + v    v+++   +v  + ++e + ++ + ++a+ +g+   ka+a ++v +p++G +v v+v+ Gde++eG+++  l amkmet i ++ +G+v+ +lv++Gdkv  ++ l
  MMETSP1061-20121228|34451_1  642 IMDTTWRDAHQSLLATRMRTQELERCAEATNEVmkNAFSLEMWGGATFDVAMRFLHECPWKRLESLREKTPDVPFQMLLRGANAVGYTNYADNVVYKFCDQAQKSGIDVFRVFDSLNYLENLKLGVDAAGKAGGFVEGTMSYTgdvADPSkgkYNLEYYMNLGRELVDMGSHSLAIKDMAGLLTPRASKMLVSALREEFPdIPIHVHTHDTAGSGVASMLAAAEAGADIVDGAMDAMSGMTSQPSIGAIAANLKGSELDTGLDMDQLAPLNTYWENVRSLYAPFESGQLSGSSDVYQHEIPGGQYTNLLFQSKQLGLTEKWPEIKRKYAQANIVLGDIPKVTPSSKVVGDLAQFMVAQDLQPQDVLnqaetlafpDSVVNYLRGDIGVPPGGFPEPLRSKVLKGRgLEPVEGRPGKFLKEyDFEQERESLLANYGTRITEKDLLSYALYPNVFNEWKEYESVygdvdilptHVFLNPMKVGQEI----DLDLGKGLSRVIKLVAIQDVDENgSRDVLFEVNGEPHYMSVTDNSAAVEGAIREKAGAPGTVGSPMPGVVVGVQVKVGDEISEGDTVATLSAMKMETSIPSTYSGVVKRVLVNVGDKVDGDDLL 1249
                   6899*************************999855689********************************************************************************************************9443345422278********************************************77****************************************************************************************************************************************************9887776655444444301000002256779**********************99856789*******975489999999888777789**************99888765556666655432223333333222....222233333333333322333221122222222333334444444555666779****************************************************************999876 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.1   0.0   1.2e-20   2.3e-18     644     888 ..     185     434 ..     155     446 .. 0.84

  Alignments for each domain:
  == domain 1    score: 63.1 bits;  conditional E-value: 1.2e-20
    TIGR01369 644 nlakeleeagvkilGtsaesidraEdRekFsklldelgikqpkg..keatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryle....eavevskekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevkkkikeivkkiakelkvkGllniqfvvkd.eevyviEvnvRasRtvPfvskalgvplvklavkvllgkkleelekgvkkekksklvavk 888
                  ++a++ ++ag+  +G ++e+++r  d+++  ++  + +++   g   +++++e+++e+++ ig+Pv++++s   gG++m++v+++e+l  ++e    ea++   +  v i+++++    ++v ++ dg+  +++           H    + + p+ +l +e+ ++++e++ +++ + k+k    + f+v+   + y iEvn+R      +   ++g++lv+  +k+ +g++le+++  ++++ +++ va++
  MMETSP1061-20121228|34451_1 185 EFAQACADAGIVFVGPTVENLNRFADKTSARQAAIDADVPVVPGsdGALETKEDVVEFVEGIGLPVIIKASMGGGGKGMRVVRKMEDLVPFFEsassEALASFGDGSVFIERFVDRPRHIEVQIIGDGTGNVVHLWERDCSVQRRHQ-KVIEMAPAFTLPDELREQLHEYAVRLTSQAKYKNAGTVEFLVDSeLRPYFIEVNPRIQVEHTVTEEVTGIDLVQAQMKIAAGASLEDVGL-IQENISARGVAIQ 434
                  68999999*******************9999988888888765511689****************************************999933333444456778*********************9999887766666666665.678899************************************984589***************************************886.7777777777665 PP

>> TIGR01205  D_ala_D_alaTIGR: D-alanine--D-alanine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   6.3e-15   1.2e-12      89     285 ..     193     386 ..     182     387 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 6.3e-15
    TIGR01205  89 lgipyvGsgvlaSalsmdKlltKlllkalglpvadyavlerkeekseeaekekleklglpvivKpareGSSvGvskvkseeeleealeeafey......deevlveeaik.grelevsvlekeealpiieiveekekedFydYeaKYldgsaelvipaelseeeeekikelalkaykalgcrglaRvDfflekegeiylnEiNt 285
                  +gi +vG+ v+      dK   ++ + ++++pv++      + e++e+  +e +e +glpvi+K++  G   G+ +v++ e+l  ++e a +       d +v++e++++  r +ev +++ + + ++++  e ++     +  ++  ++  e++  + l++e+ e+++e+a+++ ++ + ++ + v+f++++e + y+ E+N+
  MMETSP1061-20121228|34451_1 193 AGIVFVGPTVENLNRFADKTSARQAAIDADVPVVPGSDG--ALETKED-VVEFVEGIGLPVIIKASMGGGGKGMRVVRKMEDLVPFFESASSEalasfgDGSVFIERFVDrPRHIEVQIIG-DGTGNVVHLWERDC-----S-VQRRHQKVIEMAPAFTLPDELREQLHEYAVRLTSQAKYKNAGTVEFLVDSELRPYFIEVNP 386
                  6899******************************97644..3444444.567899***************************9877776654322224489*******75279********.66688888888888.....2.3333444567788888********************************************8 PP

>> TIGR02146  LysS_fung_arch: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.0   5.6e-13   1.1e-10     138     236 ..     797     895 ..     789     926 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 5.6e-13
    TIGR02146 138 ledLlkvvktakeagvdrvsiaDtvGvatPrrvyelvrkvkrvvpgvdieihahnDlGlavanalaaiegGatvvdttvnGlGeraGivpLqvllaaly 236
                  le+ +++ +   ++g   ++i D  G +tPr  + lv+ ++++ p ++i++h+h+  G  va  laa e+Ga++vd ++  +   +    ++ ++a l+
  MMETSP1061-20121228|34451_1 797 LEYYMNLGRELVDMGSHSLAIKDMAGLLTPRASKMLVSALREEFPDIPIHVHTHDTAGSGVASMLAAAEAGADIVDGAMDAMSGMTSQPSIGAIAANLK 895
                  666777777777899999**********************************************************99887766665556666666655 PP

>> TIGR03217  4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.1   1.9e-12   3.8e-10     150     254 ..     805     908 ..     794     915 .. 0.92

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 1.9e-12
    TIGR03217 150 kllesyGadvvyvvdsaGallpedvkdrvkalkealkpetevGlhahenlslavansivaveeGatridaslaglGagaGnaplevlvavldrlGletgvdlfkl 254
                  + l + G++ + + d aG l+p+  k  v+al+e++  ++ + +h+h+  + +va  ++a e+Ga+ +d+++ ++        + +++a l+   l+tg+d+ +l
  MMETSP1061-20121228|34451_1 805 RELVDMGSHSLAIKDMAGLLTPRASKMLVSALREEFP-DIPIHVHTHDTAGSGVASMLAAAEAGADIVDGAMDAMSGMTSQPSIGAIAANLKGSELDTGLDMDQL 908
                  667789*****************************97.9************************************99999999******9999999999999776 PP

>> TIGR02660  nifV_homocitr: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.0       1.4   2.7e+02       2      16 ..     640     654 ..     639     674 .. 0.74
   2 ?   -1.9   0.0       1.8   3.5e+02     142     171 ..     734     763 ..     730     769 .. 0.87
   3 !   35.6   0.0     7e-12   1.4e-09     140     282 ..     796     940 ..     780     953 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 1.4
    TIGR02660   2 vlinDttLRDGEqaa 16 
                  ++i Dtt RD  q+ 
  MMETSP1061-20121228|34451_1 640 LMIMDTTWRDAHQSL 654
                  589*********984 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.8
    TIGR02660 142 eflvelaevakeagakRlRfaDtvgvldPf 171
                  +++ ++  +a+++g++ +R+ D +  l+ +
  MMETSP1061-20121228|34451_1 734 NVVYKFCDQAQKSGIDVFRVFDSLNYLENL 763
                  67889999***************9998866 PP

  == domain 3    score: 35.6 bits;  conditional E-value: 7e-12
    TIGR02660 140 deeflvelaevakeagakRlRfaDtvgvldPfstyelvkalraal.elelElHaHnDlGlAtAntlaavkaGassvsvtvlGlGERAGnAaleevalalkellgldtgidlselkelsqlvakasgralea.qkavvGes.vFaHE 282
                  + e+ ++l + + ++g + l + D  g+l+P ++  lv+alr+++ ++++ +H+H+  G  +A  laa++aGa +v+ ++  +       ++  +a+ l +  +ldtg+d+++l  l ++ ++  +   +  +  + G+s v++HE
  MMETSP1061-20121228|34451_1 796 NLEYYMNLGRELVDMGSHSLAIKDMAGLLTPRASKMLVSALREEFpDIPIHVHTHDTAGSGVASMLAAAEAGADIVDGAMDAMSGMTSQPSIGAIAANL-KGSELDTGLDMDQLAPLNTYWENVRSLYAPFeSGQLSGSSdVYQHE 940
                  567888999999*******************************9979****************************************************.6789**********99988876654444433133455543466666 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.8   0.5       7.5   1.5e+03     255     270 ..      77      92 ..      55     121 .. 0.43
   2 !   34.9   3.7   7.2e-12   1.4e-09     163     231 ..    1187    1255 .]    1166    1255 .] 0.92

  Alignments for each domain:
  == domain 1    score: -4.8 bits;  conditional E-value: 7.5
    TIGR01348 255 aeeaaaapaaakaeak 270
                  +e++aaapa+   e +
  MMETSP1061-20121228|34451_1  77 KEATAAAPASEDDEKP 92 
                  2222222222222222 PP

  == domain 2    score: 34.9 bits;  conditional E-value: 7.2e-12
    TIGR01348  163 iGdaekvevievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvleve 231 
                   +G+   + v+ v vkvGd++s++ ++ tl + k    +P++ sGvvk++ v+vGdkv+  dl++ +eve
  MMETSP1061-20121228|34451_1 1187 VGSPMPGVVVGVQVKVGDEISEGDTVATLSAMKMETSIPSTYSGVVKRVLVNVGDKVDGDDLLVEIEVE 1255
                   77777889******************************************************9999875 PP

>> TIGR02090  LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.5   0.0   4.4e-10   8.6e-08     139     252 ..     796     909 ..     786     941 .. 0.87

  Alignments for each domain:
  == domain 1    score: 29.5 bits;  conditional E-value: 4.4e-10
    TIGR02090 139 didflikvfkkaeeagadrinvadtvGvltPekmeelikklkekvk.lpvsvhchndfGlavansiagvlaGaeqvhvtvnGlGeraGnaaleevvialkvlygvdvkiktekly 252
                  ++++ +++ ++ ++ g+  +++ d  G ltP++++ l+  l+e+   +p+ vh h+  G  va  +a+ +aGa  v+++++ +   +   ++  + + lk   ++d+ +++++l 
  MMETSP1061-20121228|34451_1 796 NLEYYMNLGRELVDMGSHSLAIKDMAGLLTPRASKMLVSALREEFPdIPIHVHTHDTAGSGVASMLAAAEAGADIVDGAMDAMSGMTSQPSIGAIAANLKG-SELDTGLDMDQLA 909
                  688999999999********************************988*******************************99999988888888877777764.4666666666665 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.5     9e-10   1.8e-07     101     155 ..    1199    1253 ..    1164    1254 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 9e-10
    TIGR00531  101 fvevGdkvkkgdvvciveAmklmneieaevagkvveilvedgqpveygepLivie 155 
                    v+vGd++++gd+v+ + Amk+   i   ++g v+ +lv+ g+ v+ ++ L+ ie
  MMETSP1061-20121228|34451_1 1199 QVKVGDEISEGDTVATLSAMKMETSIPSTYSGVVKRVLVNVGDKVDGDDLLVEIE 1253
                   599**********************************************999997 PP

>> TIGR00973  leuA_bact: 2-isopropylmalate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.0      0.16        32       3      29 ..     641     668 ..     639     680 .. 0.77
   2 !   25.8   0.0   3.9e-09   7.6e-07     142     229 ..     794     878 ..     734     898 .. 0.86

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.16
    TIGR00973   3 lifdttlrdGeqapgas.ltveeklqia 29 
                  +i+dtt rd  q++ a+ + ++e  + a
  MMETSP1061-20121228|34451_1 641 MIMDTTWRDAHQSLLATrMRTQELERCA 668
                  79***********876537777755555 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 3.9e-09
    TIGR00973 142 rteleflarvveaaieaGattiniPdtvGyalPaeygelikelkenvPnidkailsvhchddlGlavanslaavknGarqvectinGi 229
                  + +le+ +++ +  ++ G+  + i d  G ++P     l++ l+e+ P+i    + vh+hd  G  va  laa ++Ga+ v+++++ +
  MMETSP1061-20121228|34451_1 794 KYNLEYYMNLGRELVDMGSHSLAIKDMAGLLTPRASKMLVSALREEFPDI---PIHVHTHDTAGSGVASMLAAAEAGADIVDGAMDAM 878
                  556677777778899*********************************99...599***************************99876 PP

>> TIGR01142  purT: phosphoribosylglycinamide formyltransferase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.1   2.8e-09   5.5e-07     121     283 ..     232     399 ..     146     444 .. 0.69

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 2.8e-09
    TIGR01142 121 fadsleeleeavekiGfPcvvkpvmsssGkGqsvvkgpediekaWeeakegargs..aerviveefidfdveitlltvravdg.vvefcaPiGhrqedgdykesWqPq.elsekaleeakeiakrvvdaLGGlGlfGvelfvkgd.evifsevsprPhdtglvtlisq 283
                    ++ e++ e ve iG+P+++k+ m+  GkG  vv+  ed+ + +e a ++a +s  ++ v +e f+d    i + ++    g vv++ +    +q + ++     P+ +l ++  e+ +e a r++++   +    ve++v ++ + +f ev pr +    vt    
  MMETSP1061-20121228|34451_1 232 ALETKEDVVEFVEGIGLPVIIKASMGGGGKGMRVVRKMEDLVPFFESASSEALASfgDGSVFIERFVDRPRHIEVQIIGDGTGnVVHLWERDCSVQRRHQKVIEMAPAfTLPDELREQLHEYAVRLTSQAKYKNAGTVEFLVDSElRPYFIEVNPRIQVEHTVTEEVT 399
                  457899999***************************************988766422789********9888877777665554788877777777777777666665367777777788888888888777777778888877646788888888777777765555 PP

>> TIGR00977  LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.6e-07   3.1e-05     151     251 ..     795     895 ..     787     916 .. 0.90

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.6e-07
    TIGR00977 151 anpeyalktlkvaekaGadwlvladtnGGtlpheieeitkkvkkrlkdpqlGihahndsetavansllaveaGavqvqGtinGlGercGnanlcslipnlq 251
                   n ey ++  +   + G++ l + d  G   p   + ++  +++++ d  + +h+h+ ++  va  l+a eaGa  v+G+++ +   + +  + ++  nl+
  MMETSP1061-20121228|34451_1 795 YNLEYYMNLGRELVDMGSHSLAIKDMAGLLTPRASKMLVSALREEFPDIPIHVHTHDTAGSGVASMLAAAEAGADIVDGAMDAMSGMTSQPSIGAIAANLK 895
                  57788888888888999*******************************99**********************************99999999999999986 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0       3.3   6.4e+02     253     277 ..      91     115 ..      87     117 .. 0.85
   2 !   19.9   0.0   3.6e-07     7e-05      67     269 ..     189     405 ..     182     416 .. 0.69

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 3.3
    TIGR02144 253 vpEfKntvrvtgvnvaeklveyvve 277
                   p fKn++ ++  ++a  +++ + e
  MMETSP1061-20121228|34451_1  91 KPFFKNIMAANRAEIAVRIMRAATE 115
                  5679************999998877 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 3.6e-07
    TIGR02144  67 lleelGvkvinss.eviiacgdKvfttlkLakagvPt.Pktivafd.keaalklaeelGyPvvlKPveGsWGrlvskvkdkdeaealleh..kevlkgsqlklylvqEyinkpgRDiRvfviGdea...iaaiyRvs....eewrtntArGgkaepvkvdeeveelavkaaeavg.gevvaiD.ivEskerGllvnEvndv..pEfKntvrvtgvnvae 269
                  ++ ++G+  + ++ e + +  dK  +  +   a+vP+ P +  a++ ke++++ +e +G Pv++K  +G  G+ +  v+  +++  + e    e+l  +     ++  ++++p R i v +iGd +   +    R       + +    + + + p ++ e+++e av+ +   + +++ +++ +v+s+ r + + Evn+   +E+  t +vtg+++ +
  MMETSP1061-20121228|34451_1 189 ACADAGIVFVGPTvENLNRFADKTSARQAAIDADVPVvPGSDGALEtKEDVVEFVEGIGLPVIIKASMGGGGKGMRVVRKMEDLVPFFESasSEALASFGDGSVFIERFVDRP-RHIEVQIIGDGTgnvVHLWERDCsvqrRHQKVIEMAPAFTLPDELREQLHEYAVRLTSQAKyKNAGTVEfLVDSELRPYFI-EVNPRiqVEHTVTEEVTGIDLVQ 405
                  55667777776542678899999999999999999954877666542789**********************999999999999988875226899999999999******99.99*******965111333344433322222222233444556677778888888865444415556676344555556654.78875114566666778877655 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.0   8.3e-07   0.00016      82     269 ..     205     404 ..     181     411 .. 0.75

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 8.3e-07
    TIGR00768  82 ienagdKllssalLakaglpl.p.ktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaekllealeqlke...kykvflvQeyikksggrdiRvfVvgd...evvaaiyr.ikseefrsNla..rGgkaekcelteeieelaikaakalgldvag.iDllesedkgllvlEvNasvef..knsekvtgvniA 269
                  +++  dK    ++   a +p+ p   + ++ +e++ +++e ig Pv++K  +G  Gk++  v++ + +    e+   ++       ++++  +++++    i v ++gd   +vv   +r    ++    +     + + + el e+ +e a++ +   + + ag + +l + +    ++EvN+ ++   + +e+vtg+++ 
  MMETSP1061-20121228|34451_1 205 LNRFADKTSARQAAIDADVPVvPgSDGALETKEDVVEFVEGIGLPVIIKASMGGGGKGMRVVRKMEDLVPFFESASSEALasfGDGSVFIERFVDRPR--HIEVQIIGDgtgNVVHLWERdCSVQRRHQKVIemAPAFTLPDELREQLHEYAVRLTSQAKYKNAGtVEFLVDSELRPYFIEVNPRIQVehTVTEEVTGIDLV 404
                  556667777777777777765332457788999**********************************9999887655543214457899*******99..777888886444789999998444444444430134556677999*********9887777655549*****99999*******765500567899***985 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.4e-07   8.6e-05     212     305 ..     209     310 ..     202     324 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.4e-07
    TIGR02068 212 sDkeltkklLkaaGvPvPeGt..vvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees......seviverfikG.rdhrlLvvg 305
                   Dk  +++   +a vPv  G+   ++++e+++e +e +G+Pv+ik   G  G+G+ + +++ e+++  +e a+ e+       +v +erf+   r+  + ++g
  MMETSP1061-20121228|34451_1 209 ADKTSARQAAIDADVPVVPGSdgALETKEDVVEFVEGIGLPVIIKASMGGGGKGMRV-VRKMEDLVPFFESASSEAlasfgdGSVFIERFVDRpRHIEVQIIG 310
                  5899999999999***988864468999***************************99.788888999999988876555565689999998541455566665 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.3       7.7   1.5e+03     159     195 ..      77     113 ..      60     118 .. 0.53
   2 !   18.5   0.6     1e-06    0.0002      17      75 ..    1195    1253 ..    1184    1255 .] 0.92

  Alignments for each domain:
  == domain 1    score: -4.1 bits;  conditional E-value: 7.7
    TIGR01347 159 aaakaakaaenaatrseeRvkmtRlrqriaerLleak 195
                   +a+aa+ a++ ++++  +  m+  r++ia r++ a 
  MMETSP1061-20121228|34451_1  77 KEATAAAPASEDDEKPFFKNIMAANRAEIAVRIMRAA 113
                  2222222222335666666667777777777666654 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 1e-06
    TIGR01347   17 vaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaele 75  
                   v+  + kvGd +++++++++l   k++  ++s  +Gv++++l++ gd+v  ++ l e+e
  MMETSP1061-20121228|34451_1 1195 VVGVQVKVGDEISEGDTVATLSAMKMETSIPSTYSGVVKRVLVNVGDKVDGDDLLVEIE 1253
                   5666789**********************************************999987 PP

>> TIGR01730  RND_mfp: efflux transporter, RND family, MFP subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.2    0.0036       0.7      29      59 ..    1187    1217 ..    1167    1223 .. 0.65
   2 !    8.8   0.0   0.00076      0.15      25      58 ..    1220    1253 ..    1216    1255 .] 0.91

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0036
    TIGR01730   29 iaaevaGkvtkisvkeGqkVkkGqlLakldd 59  
                   + +  +G+v  ++vk G+++++G++ a+l  
  MMETSP1061-20121228|34451_1 1187 VGSPMPGVVVGVQVKVGDEISEGDTVATLSA 1217
                   4445566666666666666666666666644 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00076
    TIGR01730   25 deaeiaaevaGkvtkisvkeGqkVkkGqlLakld 58  
                   +e++i ++++G+v++++v+ G+kV   +lL++++
  MMETSP1061-20121228|34451_1 1220 METSIPSTYSGVVKRVLVNVGDKVDGDDLLVEIE 1253
                   6899999***********************9997 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.2   2.8e-05    0.0055      60      98 ..    1186    1224 ..    1173    1228 .. 0.87
   2 ?    3.0   0.1     0.044       8.5     252     286 ..    1220    1254 ..    1217    1255 .] 0.66

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.8e-05
    TIGR03794   60 tiqskgsGqvidlkvkvGdqvkkgdvvarieqpelrerl 98  
                   t+ s+  G+v+ ++vkvGd ++ gd+va+++ ++++  +
  MMETSP1061-20121228|34451_1 1186 TVGSPMPGVVVGVQVKVGDEISEGDTVATLSAMKMETSI 1224
                   6789999***********************998877665 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.044
    TIGR03794  252 lnteivsqhdGrvlevsltkGdlVeagaslaslev 286 
                   ++t i s+++G v  v ++ Gd V+ +  l+ +ev
  MMETSP1061-20121228|34451_1 1220 METSIPSTYSGVVKRVLVNVGDKVDGDDLLVEIEV 1254
                   56677777777777777777777777777776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        35  (0.00853242); expected 4.1 (0.001)
Passed Fwd filter:                        21  (0.00511945); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              21  [number of targets reported over threshold]
# CPU time: 0.96u 0.18s 00:00:01.13 Elapsed: 00:00:00.68
# Mc/sec: 2435.98
//
Query:       MMETSP1061-20121228|34467_1  [L=1274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.53u 0.15s 00:00:00.68 Elapsed: 00:00:00.32
# Mc/sec: 5254.82
//
Query:       MMETSP1061-20121228|34497_1  [L=776]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-06   23.9   8.5      0.017   12.5   0.0    5.6  7  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.18   7.3e+02     109     126 ..      30      47 ..      23      60 .. 0.70
   2 !    3.5   0.1    0.0024       9.7      97     127 ..     173     203 ..     166     220 .. 0.79
   3 ?   -3.6   0.0      0.35   1.4e+03      98     122 ..     386     410 ..     381     412 .. 0.79
   4 !    4.3   0.0    0.0013       5.5     134     168 ..     438     472 ..     422     483 .. 0.84
   5 !    4.0   0.0    0.0017       6.9     133     166 ..     511     544 ..     504     547 .. 0.84
   6 !   12.5   0.0   4.2e-06     0.017     123     173 ..     543     593 ..     540     609 .. 0.82
   7 ?   -1.3   0.0     0.069   2.8e+02      46      60 ..     653     667 ..     641     677 .. 0.57

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.18
    TIGR02521 109 LcqqkkyeeAeqqfeaAi 126
                  L ++++++eA   f+ A 
  MMETSP1061-20121228|34497_1  30 LLSKGQFKEANDAFNSAQ 47 
                  566677777777777664 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.0024
    TIGR02521  97 nngdvlNNYGtFLcqqkkyeeAeqqfeaAie 127
                     +++NN G   c ++  ++A++ fe+A++
  MMETSP1061-20121228|34497_1 173 LAMRAHNNMGHIECIERSENHAYAEFEKALA 203
                  5567899999999999999999999999876 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 0.35
    TIGR02521  98 ngdvlNNYGtFLcqqkkyeeAeqqf 122
                   ++vlN  Gt L+++++ + A   f
  MMETSP1061-20121228|34497_1 386 VATVLNYIGTLLFRRQELDYALCFF 410
                  57889999*******9999887655 PP

  == domain 4    score: 4.3 bits;  conditional E-value: 0.0013
    TIGR02521 134 parsyeNaglcalkagdtekaekyltralkidpkr 168
                   + + +N+g ++ +++++ +a++y +r+l  d++ 
  MMETSP1061-20121228|34497_1 438 ISVTCNNIGRILQELERFREAKHYYQRSLGDDKHL 472
                  566789**********************9988875 PP

  == domain 5    score: 4.0 bits;  conditional E-value: 0.0017
    TIGR02521 133 qparsyeNaglcalkagdtekaekyltralkidp 166
                    + ++ N+gl+  k g +++a  +++++l++++
  MMETSP1061-20121228|34497_1 511 LYSTVWYNLGLIHDKMGAFNEAIRAFRMSLNLRR 544
                  5577899*********************999876 PP

  == domain 6    score: 12.5 bits;  conditional E-value: 4.2e-06
    TIGR02521 123 eaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpesll 173
                  ++A+   k    +  y N+g+ ++++++ ++a +++++al+++  + +  l
  MMETSP1061-20121228|34497_1 543 RRAMLGHKHSDVSCLYYNIGVLQMEQNQLDEATESFREALAYRHVSGKGQL 593
                  5666666777778889*************************9987766555 PP

  == domain 7    score: -1.3 bits;  conditional E-value: 0.069
    TIGR02521  46 dlekAkenlekAlel 60 
                  dl +A+ nl++Al++
  MMETSP1061-20121228|34497_1 653 DLYQAQGNLQNALKY 667
                  334444455555544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (776 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 3531.85
//
Query:       MMETSP1061-20121228|34507_1  [L=680]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (680 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 3094.92
//
Query:       MMETSP1061-20121228|34508_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1703.86
//
Query:       MMETSP1061-20121228|34525_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 515.39
//
Query:       MMETSP1061-20121228|34523_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1011.92
//
Query:       MMETSP1061-20121228|34517_1  [L=1003]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1003 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.16s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 3394.49
//
Query:       MMETSP1061-20121228|34526_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0058   13.2   0.0     0.0086   12.7   0.0    1.2  1  TIGR02961 allantoicase: allantoicase


Domain annotation for each model (and alignments):
>> TIGR02961  allantoicase: allantoicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   2.1e-06    0.0086     190     260 ..     192     256 ..     161     271 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 2.1e-06
    TIGR02961 190 sdahfgkkenliapGraknmgdGWetaRrrdpGndWvivrLgapgliekievDtahfkGnapdsvkleaae 260
                  +d h+g   +l  pG  +n   GW    + d+ ++W  ++   +g i+kie+Dt+ + G +p++v+l   +
  MMETSP1061-20121228|34526_1 192 TDVHYGA--DLALPGWYSN--RGWLG--SADDICNWHGLACDDQGRIRKIELDTNGLTGAFPSEVALLHET 256
                  5556665..4555555443..45643..5678899*****************************9986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.26
# Mc/sec: 2609.32
//
Query:       MMETSP1061-20121228|34538_1  [L=405]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (405 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 2055.98
//
Query:       MMETSP1061-20121228|34536_1  [L=318]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (318 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1614.33
//
Query:       MMETSP1061-20121228|34554_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 481.76
//
Query:       MMETSP1061-20121228|34558_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 436.14
//
Query:       MMETSP1061-20121228|34565_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.37
# Mc/sec: 342.46
//
Query:       MMETSP1061-20121228|34564_1  [L=725]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (725 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.22s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 3299.73
//
Query:       MMETSP1061-20121228|34578_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.028   10.9   0.0      0.036   10.6   0.0    1.1  1  TIGR03039 PS_II_CP47: photosystem II chlorophyll-binding protein CP47


Domain annotation for each model (and alignments):
>> TIGR03039  PS_II_CP47: photosystem II chlorophyll-binding protein CP47
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   8.7e-06     0.036     143     205 ..      14      75 ..      10      80 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 8.7e-06
    TIGR03039 143 lllsgllcfgfgafhlsglfgpglwvsdpygltgsvepvapewgadgfnpfnpggivahhiaa 205
                  l+l+ +lc+g+  +   g+ gpg+  +   gl  s e+ +p++ +  f  +np+   a+  aa
  MMETSP1061-20121228|34578_1  14 LVLAAILCWGMTLVDAFGMIGPGIRTTCRLGLSTSDENEGPSF-PSSFGWHNPAPASADSKAA 75 
                  89***************************************98.5689999999888876665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 814.89
//
Query:       MMETSP1061-20121228|34585_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 384.49
//
Query:       MMETSP1061-20121228|34595_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.17s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|34589_1  [L=1087]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1087 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.21s 00:00:00.55 Elapsed: 00:00:00.46
# Mc/sec: 3118.96
//
Query:       MMETSP1061-20121228|34591_1  [L=748]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (748 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       404  (0.0984885); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.42u 0.18s 00:00:00.60 Elapsed: 00:00:00.33
# Mc/sec: 2991.75
//
Query:       MMETSP1061-20121228|34598_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2001.83
//
Query:       MMETSP1061-20121228|34617_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1553.87
//
Query:       MMETSP1061-20121228|34621_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1383.02
//
Query:       MMETSP1061-20121228|34632_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 513.29
//
Query:       MMETSP1061-20121228|34635_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 514.06
//
Query:       MMETSP1061-20121228|34629_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2535.10
//
Query:       MMETSP1061-20121228|34658_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-28   96.5   0.7    3.3e-28   96.4   0.5    1.0  1  TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
      2e-10   38.0   0.8    2.1e-10   37.9   0.5    1.0  1  TIGR00518 alaDH: alanine dehydrogenase
  ------ inclusion threshold ------
      0.029   11.4   0.2      0.028   11.5   0.2    1.1  1  TIGR02853 spore_dpaA: dipicolinic acid synthetase, A subunit


Domain annotation for each model (and alignments):
>> TIGR00561  pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.4   0.5   2.4e-31   3.3e-28     247     315 ..       3      71 .]       1      71 [] 0.98

  Alignments for each domain:
  == domain 1    score: 96.4 bits;  conditional E-value: 2.4e-31
    TIGR00561 247 evdiiittalipgkpapklitkemvdsmkagsvivdlaaeqggnceytkagevvttenqvkvigytdlp 315
                  +vdii+ttalipg+ ap l+ ++m++ mkagsv vdlaa++ggn   t++ e+vtt n+vk+igytdlp
  MMETSP1061-20121228|34658_1   3 DVDIIVTTALIPGRKAPVLVDQDMLNLMKAGSVCVDLAAANGGNVAQTQPDEIVTTSNGVKIIGYTDLP 71 
                  7*******************************************************************9 PP

>> TIGR00518  alaDH: alanine dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.9   0.5   1.5e-13   2.1e-10     230     278 ..       3      51 ..       1      65 [. 0.89

  Alignments for each domain:
  == domain 1    score: 37.9 bits;  conditional E-value: 1.5e-13
    TIGR00518 230 eadlligavlipGakapklvseelvkqmkpGavivdvaidqGGivetvr 278
                  + d+++++ lipG+kap+lv +++++ mk G+v vd+a  +GG v  ++
  MMETSP1061-20121228|34658_1   3 DVDIIVTTALIPGRKAPVLVDQDMLNLMKAGSVCVDLAAANGGNVAQTQ 51 
                  679****************************************987655 PP

>> TIGR02853  spore_dpaA: dipicolinic acid synthetase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.2     2e-05     0.028     209     246 ..       3      46 ..       1      70 [. 0.83

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 2e-05
    TIGR02853 209 eiDivint..iPal....vltkdvlsklpkhaviiDlaskPGGt 246
                  ++Di++ t  iP +    ++++d+l+ +++ +v +Dla++ GG 
  MMETSP1061-20121228|34658_1   3 DVDIIVTTalIPGRkapvLVDQDMLNLMKAGSVCVDLAAANGGN 46 
                  788888876677533333799*********************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 468.56
//
Query:       MMETSP1061-20121228|34655_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.17
# Mc/sec: 861.81
//
Query:       MMETSP1061-20121228|34682_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 562.69
//
Query:       MMETSP1061-20121228|34688_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-32  108.5   0.0    3.2e-32  108.4   0.0    1.0  1  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    1.4e-08   32.7   0.0    1.5e-08   32.6   0.0    1.0  1  TIGR02181 GRX_bact: glutaredoxin 3
    1.1e-05   23.5   0.0    1.3e-05   23.1   0.0    1.2  1  TIGR02180 GRX_euk: glutaredoxin
    0.00054   17.7   0.0    0.00076   17.2   0.0    1.2  1  TIGR02190 GlrX-dom: glutaredoxin-family domain


Domain annotation for each model (and alignments):
>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  108.4   0.0   3.1e-35   3.2e-32      22      91 ..       2      71 .]       1      71 [] 0.97

  Alignments for each domain:
  == domain 1    score: 108.4 bits;  conditional E-value: 3.1e-35
    TIGR00365 22 pelpqCGfsakavqilkalgvefatvnvledeeireelkeysnWPtiPqlyvkgelvGGcdivlelyesg 91
                 p++pqCGfs++a ++++a+g++fa vn+le++eir+el++y+nWPt+Pql+vkgel+GGcdi+ e+++sg
  MMETSP1061-20121228|34688_1  2 PRFPQCGFSSRASEAVMACGERFAFVNILENPEIRAELPKYANWPTFPQLWVKGELIGGCDIICEMAASG 71
                 789***************************************************************9876 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   1.5e-11   1.5e-08       7      73 ..       5      70 ..       3      71 .] 0.94

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 1.5e-11
    TIGR02181  7 ksCpycsrAkalLeekgvefeeievdkdkeareemierskgrrtvPQifigdvhvGGcddLlalere 73
                 ++C+++srA +   + g  f  +++ +++e r+e+ + ++   t+PQ++++ + +GGcd ++++  +
  MMETSP1061-20121228|34688_1  5 PQCGFSSRASEAVMACGERFAFVNILENPEIRAELPKYAN-WPTFPQLWVKGELIGGCDIICEMAAS 70
                 58*************************************6.******************99988765 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.3e-08   1.3e-05       8      77 ..       6      70 ..       4      71 .] 0.83

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.3e-08
    TIGR02180  8 yCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekk 77
                  C ++++a e+       + +++v++ ++    e+++ L ++++  t P+++++g+ iGG+d + ++  +
  MMETSP1061-20121228|34688_1  6 QCGFSSRASEAVMAC--GERFAFVNILEN---PEIRAELPKYANWPTFPQLWVKGELIGGCDIICEMAAS 70
                 688888888888744..445888888776...89****************************98887665 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   7.4e-07   0.00076      16      74 ..       5      64 ..       4      69 .. 0.79

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 7.4e-07
    TIGR02190 16 pGCPfCakakavLkekG..ldfeeivLgkdirtrslravtGattvPqvfinGkliGgsdel 74
                 p C f  +a +++ + G  ++f++i  + +ir+  l   +   t Pq +++G+liGg d +
  MMETSP1061-20121228|34688_1  5 PQCGFSSRASEAVMACGerFAFVNILENPEIRA-ELPKYANWPTFPQLWVKGELIGGCDII 64
                 569999999999998884456667666666766.577788999**************9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.17
# Mc/sec: 551.25
//
Query:       MMETSP1061-20121228|34674_1  [L=1128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.2e-246  817.5   0.1     4e-246  817.2   0.0    1.0  1  TIGR00395 leuS_arch: leucine--tRNA ligase
    8.6e-33  111.2   4.9    8.1e-15   51.7   0.9    4.1  3  TIGR00422 valS: valine--tRNA ligase
    3.7e-28   96.0   0.0    3.2e-11   40.0   0.0    4.0  4  TIGR00392 ileS: isoleucine--tRNA ligase
    1.8e-23   80.5   0.2    1.1e-10   38.1   0.0    3.2  3  TIGR00396 leuS_bact: leucine--tRNA ligase
    2.5e-17   60.6   2.4    5.1e-08   29.9   0.0    3.0  4  TIGR00398 metG: methionine--tRNA ligase
    8.8e-09   32.8   0.0    1.4e-08   32.1   0.0    1.2  1  TIGR00435 cysS: cysteine--tRNA ligase
     0.0017   15.1   0.0     0.0029   14.3   0.0    1.3  1  TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase


Domain annotation for each model (and alignments):
>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  817.2   0.0  6.8e-249    4e-246       7     906 ..      38    1068 ..      32    1084 .. 0.90

  Alignments for each domain:
  == domain 1    score: 817.2 bits;  conditional E-value: 6.8e-249
    TIGR00395    7 yqkrWeeekifead......pddrekffltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplgfhvtGtPilglaekikrrdektikvytevha.......................................................vPkeellkladpekiveyfsreaesalkslGysidWrrefkttd..evydrfieWqlrkLkelGlikkGehpvrycpkdenpvedhdllsGegvtiveyilikfkledga....................lylvaatlrPetvyGvtnvfvnPeieyvi..vevgdekfivskeaveklsyqklk...........lkvieevkgkqligkkvkaP.vvgkevpiLPaefvdaekatGvvlsvPahaPadyialkdLkrdeelle....ikdvvedielvplikvdkyGdlpakeiveelgvksqkdkelLeeatkklykeeyakGvlienildykGikveeakekvkedlidkGladvyyefsekkvicrcGdkCvvkvledqWflkysdeeWkekalkcl..ekmrlipeevkeafeekidWlkdkavarrkGLGtrlPwdekyliesLsdstiyqayytiakllnk.delkae...........qltdelfdyifldkddvketkipleileklreefeyfyPldlrisakdLipnhLtfyifthvaifPe..efWPrgivvnGyvllegkklskskGnlltlkeavekfGadvarlylldaaelvedadfkeseveaakkrlerlkefaeeiakksdlevgeelsfldrwllsrlnkaikevkealenlelrkavkaalfelkkdvdyyrr....rsgenvkdvlaevleaiikLlaPfaPhlaeelyeevGkegfvseakfPevseeavdkevekaeeylrnlvrdikeiakiaaskpkkvylltse...dWkvevlkvvkelesedvkeamkkvre...........eeelrkrakevaelvkkilkdekked...elliseievlkaaaefikke 906 
                    q++Wee+k fe +        ++e f++t +yPy nG lh+Gh++ +t++ + a++er +gknvLfp++fh+tG+Pi + a+k+k + e ++    ++++                                                       vP ee+ ++ dp ++++yf++   + l+++G+ +dWrr f tt   ++yd+fi+Wq++ L+++ +i +G++   y+  d++ + dhd+ +Gegv ++ey+lik++++  +                    +y+v atlrPet+yG+tn+fv Pe ey+   +++ +e fi+s +++  ls q  k           ++ +e++kg++l+g  vkaP   +++v  LP  ++   k+tGvv+svP++aP+dy++lk L+ ++++ +     +d+v  +e+vp+i +++yGd +a+ + ++l++ks++dk +L +a+ + y + +  Gv++ +  +++G kv++ak  +k+++id+G+a  y+e+ e++v++r+ d+Cvv    dqW+l y++e+W   + +++  e+ + + ++    +e++i Wlk++a++r+ GLGt lPwd  ++iesLsdstiy+ayytia++l+  d+l+ e           +l  e+fdyi+l+k   + ++ip + l+++r+ef+y+yP+ lr+sakdLipnhLt+ +f+h+ai+ +  e WP+g   nG+vl++ +k+skskGn+l+++e++ek+ ad++r++ +da++  +da+f  + +++a+  l + + + ee     dl++g+ ++ +d+ l+++ n++i    +a++ +++r+ v+++ fe+  +++ yr      s  ++k v+ + +ea i L+ P+ Ph ae l+ ++Gkeg   +a++P ++ee  dk + +  ++lr+ +++ +  +  a++      +++++   +Wk +vlk ++e+ s++++ + k +++           ++++ k  +++ ++v    k+ ++     el ++++ +l+ +  ++k++
  MMETSP1061-20121228|34674_1   38 VQQKWEEAKAFEGNpeynedGSEKESFLVTFPYPYSNGHLHIGHAFSLTKAIFRAQYERHQGKNVLFPFAFHCTGMPIQAAANKLKAEIESFGVPP-QFPEddpevrakmeaemaaaaaakaaaaapdakakggktklvqktgkgivrqwnilakmVPPEEIPQFVDPYHWLKYFPPIGVEHLRNFGAGVDWRRAFITTAvnPYYDAFIRWQFETLRKKNKILFGKRNNVYSLVDGQVCADHDRSEGEGVGPQEYVLIKLQVLPVEeegprhekmakllervgdtkVYMVPATLRPETMYGQTNCFVLPEGEYGAytIDATGEIFIMSPRSARGLSCQVYKdnegytkefgkIECLETFKGEELLGLPVKAPlAKYEKVYTLPLLTISMFKGTGVVTSVPSDAPDDYVSLKALQDKPDFRAkygiTDDMVLPYEIVPIISIEGYGDASAEFMCKKLKIKSPNDKAKLTQAKDETYLKGFTIGVMTVG--PHAGKKVSDAKPIIKQEMIDAGQACLYFEP-ESRVVSRTNDECVVA-ATDQWYLAYGEESWSAAVKEHVlgENFNAYDPNALGRYEYTIGWLKEWACTRQFGLGTYLPWDPAWVIESLSDSTIYMAYYTIANHLQGlDNLNGEpskspgqidpkDLSSEVFDYIYLNKAYPDGCNIPEDKLRSMRDEFRYWYPMTLRVSAKDLIPNHLTMALFNHAAIWEDepEIWPKGYYCNGHVLVDAEKMSKSKGNFLMMNETLEKYSADATRFACADAGDSLDDANFSRETADSAIVSLSNEETWIEETLASGDLRTGDDFNLMDQILINDTNRLIAACGDAFAAMQFREGVQKGWFEMLLARNEYRSwcsdSSVPMHKVVITKWIEALIVLICPVCPHWAESLWTKIGKEGLAVKAPWPIADEE--DKLLTRQSKFLRDSLKKFRGLVGKAKKGWSTASIVVTNsypEWKENVLKFMQEQYSDETGFNTKTLMKeikqwsgknisDKKMIKDVMQFGSFVAGESKEVGRVAmdlELPFDQFAILEISLTYLKSQ 1068
                   6999********99444433345569****************************************************************998643.33334668999*******************************************************************************************888***********************************************************99888899********************************************963378999*************9887777889***************************778999**************************************998777777789999******************************************************99..******************************.***************.9********************944556667889999************************************************99986256666799***********************999************************************************752269********************************************************************************************************************************999988886221145568999******************************************999..9******************9665554433333333333235************998877655555554111155554444455555555555555554444443344455566666666666666665 PP

>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.4   0.0     7e-17   4.1e-14       9      93 ..      33     122 ..      27     129 .. 0.85
   2 !    8.0   0.0   0.00022      0.13     202     235 ..     317     348 ..     214     357 .. 0.74
   3 !   51.7   0.9   1.4e-17   8.1e-15     346     760 ..     560     982 ..     520    1043 .. 0.71

  Alignments for each domain:
  == domain 1    score: 49.4 bits;  conditional E-value: 7e-17
    TIGR00422   9 evekklyekweesgvfkpdedeek.....esfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkk 93 
                  + e ++++kwee+++f+ + + ++     esf ++ P P+  G lHiGHa+ ++   + + y+r +gknvlf+  + + g++ q+   k 
  MMETSP1061-20121228|34674_1  33 ANEIAVQQKWEEAKAFEGNPEYNEdgsekESFLVTFPYPYSNGHLHIGHAFSLTKAIFRAQYERHQGKNVLFPFAFHCTGMPIQAAANKL 122
                  567889**********866543332244477*********************999999999***********************987764 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00022
    TIGR00422 202 klangsgkdklvvATTRPEtllgdtavaVhPeDe 235
                   + +   k ++v AT RPEt+ g t  +V Pe e
  MMETSP1061-20121228|34674_1 317 RVGD--TKVYMVPATLRPETMYGQTNCFVLPEGE 348
                  3333..5679999******************976 PP

  == domain 3    score: 51.7 bits;  conditional E-value: 1.4e-17
    TIGR00422 346 RsktvvEpllskQWfVkvekLadkaleaaeke...geikfvPkrfekeylsWleelkdWcISRQliwghri...Pvwy......eketgevvvakeeaeekektklgskeleqdeDVLDTWfsSslwplstlgWp.............eekkdlkkfyptsllvtgfDIiffWvarmillslaltgqvP..f.kevlihglvrdeqgrKmSKSlgNvidPldliekyGaDalRftlaalvaaGrDinldlkkveaarkFlnKlwnasrfvlmnledkkeleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkelyeeeeeekkeakstlaivLdkllrllhpfiPflteeiyqklkekadsimlasyPeveeelvdekaekefelvkeiikevRnlkaesnia.lnaklevllklee 760
                  R+++   +  ++QW+ +  +  ++  +a++++   ++ + +  +   +y+  +  lk+W   RQ   g+ +   P+w       ++   ++++  ++ +  ++ + ++ +   + D  D  +sS +   + l+               +  ++++ +yp++l+v++ D+i    +  +++  a+  + P  + k  +++g v   + +KmSKS+gN +   + +eky aDa+Rf+ a    + +D n++ +  ++a      l n   ++   l +  +l++g+  ++l+d+ + +  n+li+++ +a+   +f e +++     W    ++ +    ++ +  + ++  + k +++  ++ l+ l++p+ P+ +e+++ k+ ++    ++a++P ++ee  d+ ++++ + + + +k+ R l  +++   ++a++ v+ ++ e
  MMETSP1061-20121228|34674_1 560 RTNDECVVAATDQWYLAYGE--ESWSAAVKEHvlgENFNAYDPNALGRYEYTIGWLKEWACTRQFGLGTYLpwdPAWVieslsdSTIYMAYYTIANHLQGLDNLNGEPSKSPGQIDPKD--LSSEVFDYIYLNKAypdgcnipedklrSMRDEFRYWYPMTLRVSAKDLIPNHLTMALFNHAAIWEDEPeiWpKGYYCNGHVLV-DAEKMSKSKGNFLMMNETLEKYSADATRFACADAGDSLDDANFSRETADSAI---VSLSNEETWIEETLAS-GDLRTGD-DFNLMDQILINDTNRLIAACGDAFAAMQFREGVQK---G-WF---EMLLARNEYRSWCSD-SSVPMHKVVITKWIEALIVLICPVCPHWAESLWTKIGKE-GLAVKAPWPIADEE--DKLLTRQSKFLRDSLKKFRGLVGKAKKGwSTASIVVTNSYPE 982
                  55555556678899998877..4444444433344667777777778899999999999999999999988333488866554322222222222222222222222223333333333..5666666665554444555555565544558999***************************99997775533889****9985.679******************************99999******99887775...4566777777766665.4666555.69***************************998743...3.54...556777777777666.7888999999***************************99.6777899*****97..999999999999999999988655443303333333333333 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   1.7e-11   9.9e-09       5      95 ..      28     121 ..      24     130 .. 0.79
   2 !   17.0   0.0   4.6e-07   0.00027     131     341 ..     218     445 ..     214     452 .. 0.79
   3 ?    1.5   0.0     0.023        14     411     486 ..     560     642 ..     525     683 .. 0.80
   4 !   40.0   0.0   5.4e-14   3.2e-11     600     823 ..     753     952 ..     748     983 .. 0.78

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 1.7e-11
    TIGR00392   5 kanlskkeekilkkweekdifekvkkkked...kkefvlhdGPPyanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvek 95 
                  +  l+ +e  +++kwee ++fe   + +ed   k++f      Py+nG++h+gha+  +   +  +y++ qG++v + +   + G+Pi  + +k
  MMETSP1061-20121228|34674_1  28 RDALRANEIAVQQKWEEAKAFEGNPEYNEDgseKESFLVTFPYPYSNGHLHIGHAFSLTKAIFRAQYERHQGKNVLFPFAFHCTGMPIQAAANK 121
                  667889999*************776665532215555555555************97654445689**********************988776 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 4.6e-07
    TIGR00392 131 qfqrlgvlvDfekpYlt..ldkeyeesvlellkelaekgllkrdlkvvywspeletaLaeaEveykeykdvkdpsiyvkfkv...kkeekteakvkl..........slliWTtTPWTLpsNlaiavnpdleYalveleskeevlilakkllekllkkage.........edleiikkvkgsdlegleyehplsekkeqleevafvvlggdhVttedGtGivHtAPghGeeDyev 341
                  +++++g  vD+  +++t  +++ y + + + ++ l +k  +  +++   +s       a+++  + e     +  + +k++v   ++e   ++k+++          +++  T  P T++  +   v p+ eY + + +   e++i+   ++  l  ++ +          ++e ++++kg++l gl  + pl++ ++     ++ +l+   +++ +GtG+v + P+   +Dy+ 
  MMETSP1061-20121228|34674_1 218 HLRNFGAGVDWRRAFITtaVNPYYDAFIRWQFETLRKKNKILFGKRNNVYSLVDGQVCADHDRSEGE-GVGPQEYVLIKLQVlpvEEEGPRHEKMAKllervgdtkvYMVPATLRPETMYGQTNCFVLPEGEYGAYTIDATGEIFIMSPRSARGLSCQVYKdnegytkefGKIECLETFKGEELLGLPVKAPLAKYEK---VYTLPLLT---ISMFKGTGVVTSVPSDAPDDYVS 445
                  6788999*********9334677999999********************************999888.333455566776661114443344444447999****9888889999************************99999999776665444332222223454456899*******************99988...33455555...7999************9999975 PP

  == domain 3    score: 1.5 bits;  conditional E-value: 0.023
    TIGR00392 411 RtkkPviyrateqwFikv......keikeelleeikkvkwvpekgekRlkkmlenrkdWciSRqRyWGvPip...vwvaekteel 486
                  Rt++  +  at+qw++         ++ke++l e+ +      ++ +R++  +   k+W+  Rq   G+ +p    wv e+ +++
  MMETSP1061-20121228|34674_1 560 RTNDECVVAATDQWYLAYgeeswsAAVKEHVLGENFNA--YDPNALGRYEYTIGWLKEWACTRQFGLGTYLPwdpAWVIESLSDS 642
                  888889999********998666666666666655443..3445689*****************999988852225777766665 PP

  == domain 4    score: 40.0 bits;  conditional E-value: 5.4e-14
    TIGR00392 600 thGfvldekGrKMSKslgNvvdpekvikkyGaDvlRlyvass.dpaedlkfseeilkevaekllkilnntlrFlllyanLdkfkpeekslkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskdrlyaekkdedkraaqttlyeiletlvkllapilpflaeeiyqnlkeekkeesvhlnefpevdeeavdealeasmklvk 823
                  ++G+vl  + +KMSKs+gN    +++++ky aD+ R+  a + d  +d +fs+e  + +       l n   ++     L + +      +  +++ +D+++++ +n l++   +a+ + +f++ +++    ++       l ++  r ++++++ +      ++ + +e+l+ l+ p+ p+ ae+++ ++ +e     v  +++p +dee  d+ l++++k ++
  MMETSP1061-20121228|34674_1 753 CNGHVLV-DAEKMSKSKGNFLMMNETLEKYSADATRFACADAgDSLDDANFSRETADSAIV----SLSNEETWIE--ETLASGD----LRTGDDFNLMDQILINDTNRLIAACGDAFAAMQFREGVQKGW--FEM-----LLARNEYRSWCSDSSVPM--HKVVITKWIEALIVLICPVCPHWAESLWTKIGKE--GLAV-KAPWPIADEE--DKLLTRQSKFLR 952
                  6888885.469*******************************9********9988766544....3444566788..6666444....66677899***************************9998643..444.....5788999*****999998..5568899**********************99882..3333.3456665444..455555555555 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.1   0.0   1.9e-13   1.1e-10       5      88 ..      37     121 ..      32     131 .. 0.74
   2 !    4.7   0.0    0.0023       1.4     106     167 ..     217     280 ..     203     292 .. 0.81
   3 !   33.6   0.0   4.3e-12   2.5e-09     599     795 ..     757     960 ..     739     991 .. 0.79

  Alignments for each domain:
  == domain 1    score: 38.1 bits;  conditional E-value: 1.9e-13
    TIGR00396   5 eieekwqqkwkekkvkkveedsekkkyYiLsmfPYPsga..lHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPaenaaie 88 
                  ++++kw++  + +   + +e + ++k   L  fPYP ++  lH+GH  + t +   + y+r +g+nvl P+ f   G+P   aa +
  MMETSP1061-20121228|34674_1  37 AVQQKWEEAKAFEGNPEYNE-DGSEKESFLVTFPYPYSNghLHIGHAFSLTKAIFRAQYERHQGKNVLFPFAFHCTGMPIQAAANK 121
                  44455544444443333444.44567778889999965556*****998888888899*********************9998865 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0023
    TIGR00396 106 kqlqalgfsydwdrelatt..dpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneev 167
                  ++l+++g++ dw r + tt  +p Y  f  w F  l +k+ +   + +  +   d+ v a+ + 
  MMETSP1061-20121228|34674_1 217 EHLRNFGAGVDWRRAFITTavNPYYDAFIRWQFETLRKKNKILFGKRNNVYSLVDGQVCADHDR 280
                  57899**********988633577889**********999887777776778888888777665 PP

  == domain 3    score: 33.6 bits;  conditional E-value: 4.3e-12
    TIGR00396 599 vvvslekmskskkngidPqeivkkyGaDalRlyilFasPieksleWdesgleGaeRfldrvynlvkeilsekeaktelkeealeeaekelrrevhkalkkvtedlekkeslntvis....elmkllnallkakk.......eelllealkalvtvlspiaPhlaeelaeklgeeeseikqakwpkvdet.alvedkvkivvqvngkvka 795
                  v v  ekmsksk+n +  +e ++ky aDa+R     a+   ++ +++ +  + a   l      ++e+l++ +     + ++ +  ++ l+++ ++ ++   + +   + +   +     e++   n+  +  +       + ++++ ++al+ ++ p+ Ph ae l+ k+g+e   + +a wp +de+ +l + + k   +   k+++
  MMETSP1061-20121228|34674_1 757 VLVDAEKMSKSKGNFLMMNETLEKYSADATRFACADAGDSLDDANFSRETADSAIVSLSNEETWIEETLASGD---LRTGDDFNLMDQILINDTNRLIAACGDAFAAMQ-FREGVQkgwfEMLLARNEYRSWCSdssvpmhKVVITKWIEALIVLICPVCPHWAESLWTKIGKEG-LAVKAPWPIADEEdKLLTRQSKFLRDSLKKFRG 960
                  667889**************************99999999999999999999988888877777777555555...68899999999************9999998877.65555411116777777776655567788755889999************************666.555666998886515666666666666666665 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.9   0.0   8.7e-11   5.1e-08       1      59 [.      64     122 ..      64     129 .. 0.95
   2 ?   -3.6   0.0       1.3   7.3e+02     221     248 ..     610     636 ..     564     650 .. 0.80
   3 !   29.3   0.0   1.3e-10   7.9e-08     315     505 ..     751     927 ..     744     952 .. 0.68
   4 ?   -3.9   0.1       1.5     9e+02     203     237 ..     997    1031 ..     980    1041 .. 0.50

  Alignments for each domain:
  == domain 1    score: 29.9 bits;  conditional E-value: 8.7e-11
    TIGR00398   1 ilvTtalyYangkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAese 59 
                  +lvT + +Y ng +H+Gh+++   a   a+y+r +G++vlf  +  + G +i+ +A++ 
  MMETSP1061-20121228|34674_1  64 FLVTFPYPYSNGHLHIGHAFSLTKAIFRAQYERHQGKNVLFPFAFHCTGMPIQAAANKL 122
                  58******************************************************986 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 1.3
    TIGR00398 221 kegLkdlaitRdlvewGipvPkdpnkvv 248
                   + Lk++a tR+    G+ +P dp  v+
  MMETSP1061-20121228|34674_1 610 IGWLKEWACTRQFG-LGTYLPWDPAWVI 636
                  455999*****999.9999999987665 PP

  == domain 3    score: 29.3 bits;  conditional E-value: 1.3e-10
    TIGR00398 315 lvahgyltvegkkmSkSkgnvvdpedllarygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkeaseedekllkkieealekidealekfefkkaleeil.klvsegnklideekPwelakeeekekellavllelirvlsillkpilpklsekilkllnlel 505
                      g+++v+ +kmSkSkgn++  ++ l++y+ad++R+  +      +D +fs e     +        + l n    + +    g l++ +  +  d+ l+++ ++ + ++  a++ ++f++++++ + ++  + n++    + w  ++          v+++ i++l++l+ p+ p+ +e++ + ++ e 
  MMETSP1061-20121228|34674_1 751 YYCNGHVLVDAEKMSKSKGNFLMMNETLEKYSADATRFACADAGDSLDDANFSRETADSAI--------VSLSNEETWIEETLASGDLRTGDDFNLMDQILINDTNRLIAACGDAFAAMQFREGVQKGWfEMLLARNEY----RSWCSDSSV---PMHKVVITKWIEALIVLICPVCPHWAESLWTKIGKEG 927
                  5678*************************************************88765555........2233333444444445555555555555667777777777777788888888777766442555555555....344433333...2223445567777777777777777777777776665 PP

  == domain 4    score: -3.9 bits;  conditional E-value: 1.5
    TIGR00398  203 peskklasevknvlenflkegLkdlaitRdlvewG 237 
                   +e +++++ + + ++++  +++ d ++ +d +++G
  MMETSP1061-20121228|34674_1  997 DETGFNTKTLMKEIKQWSGKNISDKKMIKDVMQFG 1031
                   33344444444444555555555555555555555 PP

>> TIGR00435  cysS: cysteine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   2.4e-11   1.4e-08     248     306 ..     746     805 ..     711     840 .. 0.74

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 2.4e-11
    TIGR00435 248 qlvkyflHngflkiegeKmSKSlgNfitikdllkkfdpralRllllsv.hyrnqldfsee 306
                   + k +  ng++ ++ eKmSKS gNf+++++ l+k+++ a R++++ +    +  +fs+e
  MMETSP1061-20121228|34674_1 746 IWPKGYYCNGHVLVDAEKMSKSKGNFLMMNETLEKYSADATRFACADAgDSLDDANFSRE 805
                  46788889************************************9975134455555555 PP

>> TIGR03447  mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   4.9e-06    0.0029     248     368 ..     721     846 ..     711     876 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4.9e-06
    TIGR03447 248 GsdlifPhhefsaahaeaatgeer..larhyvhagmigldGekmskskGnlvlvsklraaGeePaairlavl.aghyredrewtdevlaeaeerl...arwraalaaeeaeeaaelvaklreeladd 368
                    dli  h  ++  +  a+ ++e+    + y   g + +d ekmskskGn+ ++++   + +   a r+a   ag   +d +++ e+ ++a   l   ++w + + a+    + +  + + + l +d
  MMETSP1061-20121228|34674_1 721 AKDLIPNHLTMALFNHAAIWEDEPeiWPKGYYCNGHVLVDAEKMSKSKGNFLMMNETL-EKYSADATRFACAdAGDSLDDANFSRETADSAIVSLsneETWIEETLASGDLRTGDDFNLMDQILIND 846
                  5688777777776544455444442256999*******************88776533.33445566776652567778888888877777655421145666655555555555556666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.74u 0.17s 00:00:00.91 Elapsed: 00:00:00.56
# Mc/sec: 2611.99
//
Query:       MMETSP1061-20121228|34673_1  [L=543]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-219  727.4   0.6   2.3e-219  727.2   0.4    1.0  1  TIGR02347 chap_CCT_zeta: T-complex protein 1, zeta subunit
   6.6e-121  402.4   0.1   8.2e-121  402.1   0.1    1.0  1  TIGR02339 thermosome_arch: thermosome, various subunits, archaeal
      2e-88  295.0   0.4    2.4e-88  294.7   0.3    1.0  1  TIGR02344 chap_CCT_gamma: T-complex protein 1, gamma subunit
    6.1e-82  273.4   0.1    7.6e-82  273.1   0.1    1.0  1  TIGR02345 chap_CCT_eta: T-complex protein 1, eta subunit
      7e-79  263.8   0.4    8.8e-79  263.4   0.2    1.0  1  TIGR02340 chap_CCT_alpha: T-complex protein 1, alpha subunit
    2.4e-78  261.9   0.5    2.9e-78  261.6   0.4    1.0  1  TIGR02343 chap_CCT_epsi: T-complex protein 1, epsilon subunit
    6.4e-75  250.4   0.5      8e-75  250.1   0.3    1.0  1  TIGR02342 chap_CCT_delta: T-complex protein 1, delta subunit
    2.9e-64  215.2   0.0    3.7e-64  214.9   0.0    1.0  1  TIGR02346 chap_CCT_theta: T-complex protein 1, theta subunit
    1.1e-61  206.8   1.1    1.4e-61  206.5   0.7    1.0  1  TIGR02341 chap_CCT_beta: T-complex protein 1, beta subunit
    9.1e-23   78.3   2.7    7.1e-13   45.7   0.4    2.3  2  TIGR02348 GroEL: chaperonin GroL


Domain annotation for each model (and alignments):
>> TIGR02347  chap_CCT_zeta: T-complex protein 1, zeta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  727.2   0.4  5.6e-222  2.3e-219       2     531 .]       4     535 ..       3     535 .. 0.97

  Alignments for each domain:
  == domain 1    score: 727.2 bits;  conditional E-value: 5.6e-222
    TIGR02347   2 vkllnkkaevlrkdaalkvnlnaakglqdvlktnlGPkGtlkmlvsgaGdikltkdGnvllkelqiqhPtasliaraaaaqdditGdGttstviligellkqaerlieeglhPrilteGleiakkealefleklki...kkeeevdrelllevartslrtkleaeladklteivvdavlaikkdeee.idlfmveilemkhklevdtklirGlvldhGarhPdmkrkvknvyiltlnvsleyektevnsgfvyssaeereklveaerkfvddrvkkiielkkkvvekkadkgfvvinqkGidplsldllakegilalrrakrrnlerltlacGGealnsvedltpeslGyaGlvyetvigeekytfieevknPksvtilikgpndhtlkqikdavrdGlravknaiedkcvvaGagafeiallkklk.eekksvkGkaklgveafaeallviPkvlvensGydvqevlvkledeadearevvgvdletgesivaelkgiwdnysvkkqllssatviasqlllvdevlraGksklk 531
                  ++ +n++ae++ + +a +vn+ a  gl +vlk+nlGP+Gtlk+lv+gaG++kltkdG vllke+qiqhPta+liar+a+aqdditGdGttstv+l+gell+qa+r i+eg+hPril+eGle a+++ale+l ++k+     +   dr+l++++a tsl tkl+ +   kl+e++v ++++i+  +++ +dl  +e++ m ++ + + ++++G+vldhGarhPdm+  ++n+ i+tln sleyekte +sgf yssaeereklve+erk++d+r ++ii++k+ v+++   + fv+inqkG+dplsld++akegil+lrrakrrn+erltlacGG+++ s++d+ + +lGyaG v ++++ge+k+tf+e++++  s+t+l++gpn+h+l+q kda++dGlra+kna+ed++vvaGagafe+a++ +l+ +   +v Gkaklgv+af++allviPk+l+ensG+dv+++l+kl+de+++++  vg+d++tge+i ++ +giwdn++vk+q+l  +tv+asqlllvdev+raGk++ k
  MMETSP1061-20121228|34673_1   4 IRDVNPNAEIVSRVQARAVNVAAGIGLLNVLKSNLGPRGTLKLLVGGAGQLKLTKDGLVLLKEMQIQHPTAVLIARTATAQDDITGDGTTSTVLLCGELLRQADRHISEGVHPRILVEGLEKAREAALEYLTEIKTtfdAETMIQDRDLMTSIALTSLATKLDYDSSLKLSEALVSSIQCIYAGKDSpVDLSRIEVMPMPRS-TNESRFVNGIVLDHGARHPDMPDVLTNCRIMTLNTSLEYEKTETQSGFYYSSAEEREKLVESERKWLDERCRQIIDFKRSVCKEG--ESFVIINQKGVDPLSLDIFAKEGILCLRRAKRRNMERLTLACGGSPIHSLQDIDESQLGYAGKVSQITLGEDKFTFVEDCEKALSCTMLLQGPNEHSLSQAKDAIKDGLRALKNALEDNGVVAGAGAFEVATAWYLQkKILPTVAGKAKLGVQAFCDALLVIPKTLAENSGLDVIDTLLKLQDEHSASNLLVGLDVKTGEAILPSDEGIWDNVRVKRQSLYLSTVLASQLLLVDEVMRAGKNMGK 535
                  6779***********************************************************************************************************************************9654344557*************************************977665***********986.5689*******************************************************************************99..68**************************************************************************************************************************************9456789**************************************************************************************************9976 PP

>> TIGR02339  thermosome_arch: thermosome, various subunits, archaeal
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  402.1   0.1    2e-123  8.2e-121      11     520 ..      13     529 ..       6     530 .. 0.94

  Alignments for each domain:
  == domain 1    score: 402.1 bits;  conditional E-value: 2e-123
    TIGR02339  11 rtkgrdalksniaaakavaeavkstlGPrGlDkmLvdslGdvtitnDGatilkemdiehPaakllvevaktqdeevgDGtttavvlaGeLlekaedLleqdihPtviveGyrkaaekalevideiaekidve....dkellkkvaetsltskavaeeakdklaelvveavkqvvekredgkykvdldnikiekkkGgsiedtelveGivvDkevvhegmPkrvenakialldaplevekteidaklkitspdqlkkfldqeeallkemvdkiada.......Gan.vvicqkgiDdlaqhylakkGilavrrvkksDieklaratGakivsslkeieesdLGeaelveerkvgedklvfvegaknakavtillrGgtehvvdeleRaleDalkvvksvledgkvvaGgGavevelakrlre.yaakieGreqlaveafadaleeiprilaenaGldpidalvelRakhekegnknagvdvftgeiedmlelgvieplkvkeqaiksateaatlilriDdviaa 520
                   ++  +a+  n+aa+  + +++ks lGPrG  k+Lv + G++ +t DG  +lkem+i+hP+a l+  +a +qd+ +gDGtt++v+l GeLl++a+  + +++hP ++veG +ka e ale + ei ++ d+e    d++l++ +a tsl++k     +  kl+e  v++++ +   + d    vdl +i++     +s +++++v+Giv+D  + h++mP+ ++n +i+ l+++le ekte++  +  +s ++ +k ++ e + l e   +i+d        G   v+i qkg+D l    +ak+Gil +rr+k+ ++e+l+ a+G++ + sl++i+es+LG+a+ v++ ++gedk +fve++++a + t+ll+G +eh + ++  a++D l+++k++led+ vvaG+Ga+ev+ a  l++    ++ G+ +l v+af dal  ip++laen+Gld id+l++l  +h   +n  +g+dv+tge     ++g+++ ++vk+q +  +t  a  +l +D+v++a
  MMETSP1061-20121228|34673_1  13 IVSRVQARAVNVAAGIGLLNVLKSNLGPRGTLKLLVGGAGQLKLTKDGLVLLKEMQIQHPTAVLIARTATAQDDITGDGTTSTVLLCGELLRQADRHISEGVHPRILVEGLEKAREAALEYLTEIKTTFDAEtmiqDRDLMTSIALTSLATKLD-YDSSLKLSEALVSSIQCIYAGK-D--SPVDLSRIEVMP-MPRSTNESRFVNGIVLDHGARHPDMPDVLTNCRIMTLNTSLEYEKTETQSGFYYSSAEEREKLVESERKWLDERCRQIIDFkrsvckeGESfVIINQKGVDPLSLDIFAKEGILCLRRAKRRNMERLTLACGGSPIHSLQDIDESQLGYAGKVSQITLGEDKFTFVEDCEKALSCTMLLQGPNEHSLSQAKDAIKDGLRALKNALEDNGVVAGAGAFEVATAWYLQKkILPTVAGKAKLGVQAFCDALLVIPKTLAENSGLDVIDTLLKLQDEHSA-SNLLVGLDVKTGEAILPSDEGIWDNVRVKRQSLYLSTVLASQLLLVDEVMRA 529
                  556678999**********************************************************************************************************************9999888889****************9.5778899********7776665.4..48*******986.569******************************************************************999998888764222222254437889********************************************************************************************************************************9761579********************************************6.8************************************************998 PP

>> TIGR02344  chap_CCT_gamma: T-complex protein 1, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  294.7   0.3     6e-91   2.4e-88      10     521 ..      12     528 ..       4     533 .. 0.92

  Alignments for each domain:
  == domain 1    score: 294.7 bits;  conditional E-value: 6e-91
    TIGR02344  10 kresGrkaqlsniqaakavadiirttlGpkamlkmlldplGgivltndGnailreidvahpaakslielsrtqdeevGdGttsviilaGellaaaepfleknihptvivraykkaledalkvleelsipvd....vedeakllklvkssigtkfvsrwsdlvvdlaldavktvkleerngrklevdikryakvekipGGeiedsavlkGvllnkdvthpkmrrkienprivlldcpleykkgesqtnveilkeedwnrllqleeeevkklceeiiavkpd........lvitekGvsdlaqhyllkanisairrvrktdnnriarvsGativnrveelkesdvGtgaGlfevkkiGdeyftflteckdpkactillrGaskdvlnevernlqdalavarnvllepklvpGGGatelavsvklkkkak.klegveqlpyeavadaleviprtlvqncGvnvirtltelrakhaqeekkalGidGetGkivdmkekgiweplavklqtiktaiesavlllriddivs 521
                  +  s  +a+  n+ a+  + +++++ lGp+  lk+l+   G + lt dG ++l+e++++hp+a  +   + +qd+  GdGtts ++l+Gell +a+  +++ +hp ++v++++ka e al+ l e+  + d    ++d++ ++++  +s++tk+    s ++++  +++++++   +       vd+ r + v  +p  + ++s+ ++G++l+    hp m   + n ri+ l+++ley k+e+q+    ++ e+ ++l++ e++ +++ c++ii++k          ++i +kGv  l+   ++k++i  +rr ++ + +r++ ++G + +   +++ es++G   G +    +G++ ftf+++c++  +ct+ll+G+    l++ +  ++d+l+  +n l +  +v+G Ga e+a + +l+kk   ++ g ++l ++a +dal vip+tl++n+G +vi tl +l+  h+++ +  +G+d +tG+ +  ++ giw+++ vk q++  +   a+ ll +d+++ 
  MMETSP1061-20121228|34673_1  12 EIVSRVQARAVNVAAGIGLLNVLKSNLGPRGTLKLLVGGAGQLKLTKDGLVLLKEMQIQHPTAVLIARTATAQDDITGDGTTSTVLLCGELLRQADRHISEGVHPRILVEGLEKAREAALEYLTEIKTTFDaetmIQDRDLMTSIALTSLATKLDYDSSLKLSEALVSSIQCIYAGKD----SPVDLSR-IEVMPMPR-STNESRFVNGIVLDHGARHPDMPDVLTNCRIMTLNTSLEYEKTETQSGFYYSSAEEREKLVESERKWLDERCRQIIDFKRSvckegesfVIINQKGVDPLSLDIFAKEGILCLRRAKRRNMERLTLACGGSPIHSLQDIDESQLGYA-GKVSQITLGEDKFTFVEDCEKALSCTMLLQGPNEHSLSQAKDAIKDGLRALKNALEDNGVVAGAGAFEVATAWYLQKKILpTVAGKAKLGVQAFCDALLVIPKTLAENSGLDVIDTLLKLQDEHSAS-NLLVGLDVKTGEAILPSDEGIWDNVRVKRQSLYLSTVLASQLLLVDEVMR 528
                  555566888999****************************************************************************************************************999888744546799999999999******999999999999999999988873....2578766.45555554.568999************************************************************************976222333336899****************************************************86.55555579*******************************************************************999753789*****************************************99.699***************************99888888888889999975 PP

>> TIGR02345  chap_CCT_eta: T-complex protein 1, eta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  273.1   0.1   1.8e-84   7.6e-82      22     520 ..      22     529 ..      11     532 .. 0.92

  Alignments for each domain:
  == domain 1    score: 273.1 bits;  conditional E-value: 1.8e-84
    TIGR02345  22 sninacvaiaeilkttlGPrGmdklivskek.avvsndGatilklldivhPaakllvdiaksqdsevGdGttsvvvlagellkeakplieeglhpqliiralrealklaieklkeiavelde.eksekrevleklaatalsskliaeekeffskmvvdavlsldk...ddldkkliGvkkvkGGaledsvlvkGvafkktfsyaGfeqqPkkfanPkilllnvelelkaekdnaeirvedvedykeivdaewkiileklekiv.......esG.anvvlsklsiGdlatqyfadrdifcaGrvsdedlkrvvkatGasilsavsdleadvlGkcalfeekqiGserynlftggekakactlilrGgaeqfleeaerslhdaimivrralkakkivaGGGaielelskllreks.kkidgkqqliieavakaleviPrslaenaGfdsieilnklrkkhakkgekwaGvdieteeildaleafvwePllvkknalkaateaaatilsvdetika 520
                   n+ a   + ++lk+ lGPrG  kl+v+      ++ dG  +lk+++i hP+a l+   a +qd+  GdGtts v+l+gell++a   i eg+hp++++++l++a+++a+e l ei+ + d  +  + r+++  +a t+l +kl  ++   +s+ +v +++ +       +d + i v  +   + ++s +v+G+ +++    a +   P  ++n +i++ln  le++  ++++    +++e+ +++v++e k + e+ ++i+       + G + v++ ++ +  l+   fa+  i+c  r +  +++r++ a+G+s + + +d+++++lG  +   +  +G++++ + +++eka +ct++l+G+ e+ l +a+ +++d +  ++ al ++ +vaG Ga e+  + +l++k   +++gk++l ++a+++al viP++laen G+d i++l kl+ +h+   +   G+d++t e +   ++ +w+ + vk+  l  +t  a+ +l vde ++a
  MMETSP1061-20121228|34673_1  22 VNVAAGIGLLNVLKSNLGPRGTLKLLVGGAGqLKLTKDGLVLLKEMQIQHPTAVLIARTATAQDDITGDGTTSTVLLCGELLRQADRHISEGVHPRILVEGLEKAREAALEYLTEIKTTFDAeTMIQDRDLMTSIALTSLATKLDYDSSLKLSEALVSSIQCIYAgkdSPVDLSRIEVMPM-PRSTNESRFVNGIVLDHG---ARHPDMPDVLTNCRIMTLNTSLEYEKTETQSGFYYSSAEEREKLVESERKWLDERCRQIIdfkrsvcKEGeSFVIINQKGVDPLSLDIFAKEGILCLRRAKRRNMERLTLACGGSPIHSLQDIDESQLGYAGKVSQITLGEDKFTFVEDCEKALSCTMLLQGPNEHSLSQAKDAIKDGLRALKNALEDNGVVAGAGAFEVATAWYLQKKIlPTVAGKAKLGVQAFCDALLVIPKTLAENSGLDVIDTLLKLQDEHSA-SNLLVGLDVKTGEAILPSDEGIWDNVRVKRQSLYLSTVLASQLLLVDEVMRA 529
                  4888888999***************999877589**************************************************************************************99567889****************************9999877541004455556666555.4689***********986...8999********************9999999999************9988877777776522211113441557889999******************************************************************************************************************************98762699******************************************9.99***********99999******************************9876 PP

>> TIGR02340  chap_CCT_alpha: T-complex protein 1, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  263.4   0.2   2.2e-81   8.8e-79      11     531 ..      17     531 ..       9     536 .. 0.92

  Alignments for each domain:
  == domain 1    score: 263.4 bits;  conditional E-value: 2.2e-81
    TIGR02340  11 edvrkqnvlavvavanivktslGPvGldkmlvddvGdvtitndGatilkklevehPaakvlvelaqlqdkevGdGttsvvilaaellkradelvkrkvhPtsvisGyrlalkeavkyike.klavsveel..gkealinvaktslsskiislesdlfsnlvvdavlavkvtnekgetkyPikavnilkahGksaresllvkGyalnctvasqqmpkrvkkakialldfnlqkaklklgvqivvedpeklekirkreadivkerikkilk.......aG.anvvlttkGiddlalkylveagvmavrrvkkedlkriakatGatlvssladleGeetleasllGeaeevveeriaddelilikgtkkkksasiilrGandvlldemerslhdalcvvkrtleskkvvaGgGaveaalsiylee.lattlgsreqlaiaefaealliiPkvlavnaakdstelvaklralhaaaqlkeekkklkflGldlsngkirdnveaGvlePavskvkslkfateaaitilriddliklkp 531
                   ++r  nv a + + n++k+ lGP G  k+lv  +G++ +t dG  +lk+++++hP+a ++   a+ qd   GdGtts v+l  ell++ad  +++ vhP ++++G+  a + a++y++e k ++++e++   ++ +  +a tsl++k+    s  +s+  v +++++   +   ++   +  ++++    +s++es +v+G +l+  +    mp  +++ +i+ l+ +l+  k +       + +e+ ek+ + e + + er+++i++        G + v++  kG+d l+l  +   g++++rr k++++ r++ a G++ + sl d+      + s+lG a +v++  +++d+  ++++ +k+ s++++l+G+n++ l + + ++ d l ++k +le + vvaG+Ga e+a + yl++ +  t+  + +l +++f++all+iPk+la n++ d  + + kl+  h+a+ l         +Gld+++g+     + G+ + +  k +sl  +t  a  +l +d++++  +
  MMETSP1061-20121228|34673_1  17 VQARAVNVAAGIGLLNVLKSNLGPRGTLKLLVGGAGQLKLTKDGLVLLKEMQIQHPTAVLIARTATAQDDITGDGTTSTVLLCGELLRQADRHISEGVHPRILVEGLEKAREAALEYLTEiKTTFDAETMiqDRDLMTSIALTSLATKLDYDSSLKLSEALVSSIQCIYAGK---DSPVDLSRIEVMPM-PRSTNESRFVNGIVLDHGARHPDMPDVLTNCRIMTLNTSLEYEKTETQSGFYYSSAEEREKLVESERKWLDERCRQIIDfkrsvckEGeSFVIINQKGVDPLSLDIFAKEGILCLRRAKRRNMERLTLACGGSPIHSLQDI------DESQLGYAGKVSQITLGEDKFTFVEDCEKALSCTMLLQGPNEHSLSQAKDAIKDGLRALKNALEDNGVVAGAGAFEVATAWYLQKkILPTVAGKAKLGVQAFCDALLVIPKTLAENSGLDVIDTLLKLQDEHSASNL--------LVGLDVKTGEAILPSDEGIWDNVRVKRQSLYLSTVLASQLLLVDEVMRAGK 531
                  567899***************************************************************************************************************887445556666522678899**********999889999999999999987654...56667788999876.59***************************************************************************97333322234245899********************************************986......5789*******************************************************************************862678**********************************99999998887654........67*******************************************998655 PP

>> TIGR02343  chap_CCT_epsi: T-complex protein 1, epsilon subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  261.6   0.4   7.2e-81   2.9e-78      24     530 ..      15     528 ..       3     530 .. 0.92

  Alignments for each domain:
  == domain 1    score: 261.6 bits;  conditional E-value: 7.2e-81
    TIGR02343  24 kGleakksniaaakavasilrtslGpkGldkiliskdgditvtndGatilekmdldeeiakllvelsksqdeeiGdGttgvvvlasalleqaeklldkGihpikiaeGfekaakvavekleeiaeeisvded..nketllkaaktslgskivskskrrlaeiavdavlavadlerkdvdfdlikvegkvGgsledtklikGilidkdlshpqmkkevkdakiailtcpfeppkpktkhkldissveeykklekyekekfeemidd........ikksGanlvicqwGfddeanhlllqndlpavrwvgGkeleliaiatgGrivprfeelseeklGkaklvreksfGttkdrllvieqskeskavtilvrGgnkliieeakrslhdalcvvrnlikdsrivyGGGaaeiacslaveee.adklsgveqyairafaealeeiplalaensGldpietlsevkakqlkeknpalGvdcleeGtndmkelkvletligkkqqillatqlvkmilkiddvis 530
                    ++a   n+aa+  + ++l++ lGp+G  k+l++  g++ +t dG  +l++m+++++ a l+ + + +qd+  GdGtt+ v+l + ll qa++ + +G+hp  + eG eka + a+e l ei   +++++   +++ +   a tsl++k+ + s  +l+e  v ++  +   +   vd+  i+v   + +s +++++++Gi++d    hp m+  + +++i  l   +e  k  t+  +  ss+ee +kl + e++ ++e   +        +k+  + ++i q G d  + +++ ++++  +r    +++e +++a gG+ +  +++++e++lG a++v ++ +G  +d++ ++e+++++ + t+l++G n+  +++ak +++d l +++n ++d+ +v G Ga e+a +  ++++    ++g  +  ++af++al  ip +laensGld i+tl +++ +  + +n  +G+d ++       +  + + +  k+q + l+t l   +l +d+v+ 
  MMETSP1061-20121228|34673_1  15 SRVQARAVNVAAGIGLLNVLKSNLGPRGTLKLLVGGAGQLKLTKDGLVLLKEMQIQHPTAVLIARTATAQDDITGDGTTSTVLLCGELLRQADRHISEGVHPRILVEGLEKAREAALEYLTEIKTTFDAETMiqDRDLMTSIALTSLATKLDYDSSLKLSEALVSSIQCIYAGKDSPVDLSRIEVM-PMPRSTNESRFVNGIVLDHGARHPDMPDVLTNCRIMTLNTSLEYEKTETQSGFYYSSAEEREKLVESERKWLDERCRQiidfkrsvCKEGESFVIINQKGVDPLSLDIFAKEGILCLRRAKRRNMERLTLACGGSPIHSLQDIDESQLGYAGKVSQITLG--EDKFTFVEDCEKALSCTMLLQGPNEHSLSQAKDAIKDGLRALKNALEDNGVVAGAGAFEVATAWYLQKKiLPTVAGKAKLGVQAFCDALLVIPKTLAENSGLDVIDTLLKLQDEH-SASNLLVGLDVKTGEAILPSDEGIWDNVRVKRQSLYLSTVLASQLLLVDEVMR 528
                  56899999********************************************************************************************************************999987653388889999************************99998777677777777775.47899****************************************************************999986544111222335666778999***********************************************************99999..689************************************************************9998761578999*********************************999876.5678899***9876667778999***************************986 PP

>> TIGR02342  chap_CCT_delta: T-complex protein 1, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  250.1   0.3     2e-77     8e-75       9     514 ..      18     527 ..      13     530 .. 0.95

  Alignments for each domain:
  == domain 1    score: 250.1 bits;  conditional E-value: 2e-77
    TIGR02342   9 dvrtsnivaakavadairtslGpkGmdkliqekkGeviitndGatilkqlevlhpaakllvelskaqdieaGdGttsvvvlaGalldaaekllekgihptiisesfqsaadealkilkelsipvdls....drealiksattslsskvvsqyssllaplavdavlkvidsekdknvdlkdikvvkklGgtiddtelieGvvltqkasksaggptriekakigliqfqlsapktdmenqvvvsdyaqmdrvlkeerkyilnlvkkikkaganvlliqks...ilrdavndlalhflakkkilvvkdiereevefisktlGckpvasidkltadklGkaelveevksddskivkitGvknagktvsvlvrGsnklvideaerslhdalcvirslvkkraliaGGGapeieialklskka.relkGvesyivrafadalevipytlaenaGlnpikvvtelrnrhaqGektaGisvrkggitdileeevlqpllvtksavtlasetvrsilkiddiv 514
                  + r  n+ a   + +++++ lGp+G  kl+  + G++ +t dG  +lk++++ hp+a l+   + aqd  +GdGtts v+l+G ll  a++ ++ g+hp i+ e++++a + al+ l+e+++++d +    dr+ + + a tsl++k+  + s  l+   v ++  +  + kd+ vdl  i v+  +    +++ +++G+vl++ a +    p  + + +i  ++  l   kt++++    s  ++ ++++  erk++ + +++i   +  v     s   i +  v+ l+l ++ak +il+++  +r ++e ++ + G  p+ s++ + + +lG+a  v ++++++ k   +  +++a  + ++l++G n+  + +a+ +++d l  ++  +++ +++aG Ga e+  a  l+kk   ++ G  ++ v+af dal vip tlaen+Gl+ i+++ +l+++h+  +   G++v+ g      +e +   + v++ ++ l++     +l +d+++
  MMETSP1061-20121228|34673_1  18 QARAVNVAAGIGLLNVLKSNLGPRGTLKLLVGGAGQLKLTKDGLVLLKEMQIQHPTAVLIARTATAQDDITGDGTTSTVLLCGELLRQADRHISEGVHPRILVEGLEKAREAALEYLTEIKTTFDAEtmiqDRDLMTSIALTSLATKLDYDSSLKLSEALVSSIQCIYAG-KDSPVDLSRIEVMP-MPRSTNESRFVNGIVLDHGARH-PDMPDVLTNCRIMTLNTSLEYEKTETQSGFYYSSAEEREKLVESERKWLDERCRQIIDFKRSVCKEGESfviINQKGVDPLSLDIFAKEGILCLRRAKRRNMERLTLACGGSPIHSLQDIDESQLGYAGKVSQITLGEDKFTFVEDCEKA-LSCTMLLQGPNEHSLSQAKDAIKDGLRALKNALEDNGVVAGAGAFEVATAWYLQKKIlPTVAGKAKLGVQAFCDALLVIPKTLAENSGLDVIDTLLKLQDEHSASNLLVGLDVKTGEAILPSDEGIWDNVRVKRQSLYLSTVLASQLLLVDEVM 527
                  568999999999****************************************************************************************************************9877787*******************************99999986.999********985.788889***********99986.789999**************************************************9999999888877443457899***************************************************************999999875.5689*************************************************98752799******************************************************************************************997 PP

>> TIGR02346  chap_CCT_theta: T-complex protein 1, theta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.9   0.0   8.9e-67   3.7e-64      23     525 ..      23     535 ..      11     541 .. 0.90

  Alignments for each domain:
  == domain 1    score: 214.9 bits;  conditional E-value: 8.9e-67
    TIGR02346  23 nieaikelseitrtslGPngmnklvinhleklfvtnDaatilrelevqhPaakllvlaskaqeeelGDgtnlvlvlagelLekaeelirlGlspseiikGyelalkkalevLeelvvl.evkdleekee.likalkaslssk.qlgnedilaelvakaiitvlPknsekfnvdnirvvkllGgslsdsevlkGlvlkreaeg.svk.rvkdakvavfscpldtattetkGtvLlknaeelldyskgeekkiealikeiadsgvk........vivaggsvsdlalhyvekykilvlkisskfelrrlckvvgatalvrlsapspeelGlvdsvkveeigskkvtvikqeeedskistivLrGstknllddieraidDGvnvvkalvkdsrllpGagateieLakklkky.aeklkgleqyaikkfaeafeiiPrtlaenaGlnanevlskLyaahkkgnkslgidiekesdavkdvkeekiyDllaakkfaiklateaavtvLkvDqiimakpaGGP 525
                  n++a   l ++++  lGP+g  kl++    +l +t+D   +l+e+++qhP+a l+   + aq+  +GDgt  ++ l gelL++a++ i+ G++p  +++G e+a+++ale L e+ ++ +++++ +  + ++++  +sl++k  + +   l+e +  +i ++   +++  ++  i v+ +   s ++s +++G+vl++ a   ++     + +++ ++++l+ ++tet+      +aee      +e k +++  ++i d   +        vi+ +  v  l l    k +il l+   + ++ rl+ ++g ++   l+     +lG+  +v+   +g++k t +++ e+ +   t++L+G  +  l +   ai+DG+ ++k+++ d+ +++Gaga e+  a  l+k    ++ g  ++ ++ f  a  +iP+tlaen+Gl++ + l kL  +h+  n  +g+d+++++  +   ++e i+D++  k+ ++ l+t  a  +L vD ++ a +  G 
  MMETSP1061-20121228|34673_1  23 NVAAGIGLLNVLKSNLGPRGTLKLLVGGAGQLKLTKDGLVLLKEMQIQHPTAVLIARTATAQDDITGDGTTSTVLLCGELLRQADRHISEGVHPRILVEGLEKAREAALEYLTEIKTTfDAETMIQDRDlMTSIALTSLATKlDYDSSLKLSEALVSSIQCIYAGKDSPVDLSRIEVMPM-PRSTNESRFVNGIVLDHGARHpDMPdVLTNCRIMTLNTSLEYEKTETQSGFYYSSAEEREKLVESERKWLDERCRQIIDFKRSvckegesfVIINQKGVDPLSLDIFAKEGILCLRRAKRRNMERLTLACGGSPIHSLQDIDESQLGYAGKVSQITLGEDKFTFVEDCEK-ALSCTMLLQGPNEHSLSQAKDAIKDGLRALKNALEDNGVVAGAGAFEVATAWYLQKKiLPTVAGKAKLGVQAFCDALLVIPKTLAENSGLDVIDTLLKLQDEHSASNLLVGLDVKTGEA-I-LPSDEGIWDNVRVKRQSLYLSTVLASQLLLVDEVMRAGKNMGK 535
                  788888999**********************************************************************************************************987777776555550556667999999457778889999999******************99986.56789**********9988652454256899****************************************999988775332111233337899999*******************************************************************99998.66789***********************************************9986516788999***************************************************999.4.46789*****************************988776665 PP

>> TIGR02341  chap_CCT_beta: T-complex protein 1, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  206.5   0.7   3.5e-64   1.4e-61      15     515 ..      19     530 ..       7     533 .. 0.88

  Alignments for each domain:
  == domain 1    score: 206.5 bits;  conditional E-value: 3.5e-64
    TIGR02341  15 arlssfvgaiavgdlvkstlgpkgmdkillsasseasivvtndgatilksialdnpaakvlvdiskvqddevgdgttsvtvlaaellreaeklvnkkihpqtiiegyrlatkaalealkksavdnssdk.vkfredllkiarttlsskilsqdkdhfaklavdavlrl...kgs.tnleaiqiikklggklddsyldegfllekkig.vnqpkrienakiliantaldtdkvkvfgsrvrvdstaklaelekaekekmkekvekilkhnin........vfinrqliynypeqlfadagvmaiehadfegverlalvtggeivstfdepelvklgscdlieeiligedkllkfsgvklgeactivlrgatqqildeaerslhdalavlsqtvkesrtvlgggcaellmakaveeea.qkvagkkalaveafakalrqlptiladnagfdsaelvaklraahaegnstagldleegeiadlrklgivesyklkravvssaaeaaevllrvdniikaa 515
                  ar       i + +++ks lgp+g  k+l+ ++   ++++t dg  +lk++ ++ p+a ++   +  qdd  gdgtts ++l+ ellr+a++ +++ +hp++++eg  +a +aale l++       +  ++ r+ +  ia t+l++k+  +   ++++  v ++  +   k s  +l +i+++  +  + ++s + +g++l++       p ++ n +i+  nt+l+ +k     s +   s+    +l ++e++ + e+  +i  ++          v+in++ +     ++fa+ g+ ++  a    +erl+l  gg  + ++++ +  +lg   ++ +i +gedk+     ++   +ct++l+g  +  l +a+ +++d l  l +  ++  +v+g+g+ e+  a  ++++    vagk  l v+af+ al  +p  la+n+g+d  + + kl+ +h+  n  +gld++ ge    +  gi +  ++kr+ +  ++  a +ll vd++++a 
  MMETSP1061-20121228|34673_1  19 ARAVNVAAGIGLLNVLKSNLGPRGTLKLLVGGAG--QLKLTKDGLVLLKEMQIQHPTAVLIARTATAQDDITGDGTTSTVLLCGELLRQADRHISEGVHPRILVEGLEKAREAALEYLTEIKTTFDAETmIQDRDLMTSIALTSLATKLDYDSSLKLSEALVSSIQCIyagKDSpVDLSRIEVMP-MPRSTNESRFVNGIVLDHGARhPDMPDVLTNCRIMTLNTSLEYEKTETQ-SGFYYSSAEEREKLVESERKWLDERCRQIIDFKRSvckegesfVIINQKGVDPLSLDIFAKEGILCLRRAKRRNMERLTLACGGSPIHSLQDIDESQLGYAGKVSQITLGEDKFTFVEDCEKALSCTMLLQGPNEHSLSQAKDAIKDGLRALKNALEDNGVVAGAGAFEVATAWYLQKKIlPTVAGKAKLGVQAFCDALLVIPKTLAENSGLDVIDTLLKLQDEHSASNLLVGLDVKTGEAILPSDEGIWDNVRVKRQSLYLSTVLASQLLLVDEVMRAG 530
                  566666667778899**************98876..9*********************************************************************************987665544430334445568**********999988888877766654421155535788888875.678899999999****987651579********************9975.66778888888999999999999999999877543111222226799999999********************************9999999*********************************************************************************99988752689**********************************************************9***************99999999999999*****995 PP

>> TIGR02348  GroEL: chaperonin GroL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.4   1.7e-15   7.1e-13      14     142 ..      24     147 ..      12     162 .. 0.88
   2 !   32.2   0.0   2.1e-11   8.4e-09     383     519 ..     384     527 ..     377     533 .. 0.84

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 1.7e-15
    TIGR02348  14 lekGvdkladavkvtlGPkgrnvvleksfGaPkitkdGvtvakeieledkfenlGaklvkevasktndvaGdGtttatvlaqaivkeGlknvaaGanpielkrGiekavekvveelkklskevkdkeei 142
                  + +G+  l + +k  lGP+g   +l    G+ k+tkdG  + ke++++++     a l+ + a+  +d++GdGtt +++l+  ++++  ++++ G+ p  l  G+eka e+++e l++  +  + +  i
  MMETSP1061-20121228|34673_1  24 VAAGIG-LLNVLKSNLGPRGTLKLLVGGAGQLKLTKDGLVLLKEMQIQHP----TAVLIARTATAQDDITGDGTTSTVLLCGELLRQADRHISEGVHPRILVEGLEKAREAALEYLTEIKTTFDAETMI 147
                  556665.447899********************************99887....5899**********************************************************9988777666555 PP

  == domain 2    score: 32.2 bits;  conditional E-value: 2.1e-11
    TIGR02348 383 tetelkekkarvedalnatraavee.GivaGGGvallraaeklee..lkeksedekvGveivkraleaPlrqiaenaGkdgavvvekvkek...kdeevGfnaatdeyedlveaGiidpakvtrsalqnaasiaglll.tteav 519
                   e  l + k+ ++d l+a + a+e+ G+vaG G+  + +a  l++  l + +   k+Gv+    al    +++aen+G d    + k++++   ++  vG + +t+e     + Gi d ++v r++l  ++ +a+ ll   e++
  MMETSP1061-20121228|34673_1 384 NEHSLSQAKDAIKDGLRALKNALEDnGVVAGAGAFEVATAWYLQKkiLPTVAGKAKLGVQAFCDALLVIPKTLAENSGLDVIDTLLKLQDEhsaSNLLVGLDVKTGEAILPSDEGIWDNVRVKRQSLYLSTVLASQLLlVDEVM 527
                  57889999***************854***********99999998655666779**************99*********98766666665511155669**********99*********************999665045554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (543 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.43u 0.16s 00:00:00.59 Elapsed: 00:00:00.46
# Mc/sec: 1558.05
//
Query:       MMETSP1061-20121228|34701_1  [L=46]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (46 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 233.52
//
Query:       MMETSP1061-20121228|34705_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 550.91
//
Query:       MMETSP1061-20121228|34707_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 412.47
//
Query:       MMETSP1061-20121228|34700_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1126.98
//
Query:       MMETSP1061-20121228|34713_1  [L=478]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-69  232.3  25.0    5.8e-43  145.1   6.3    2.1  2  TIGR00797 matE: MATE efflux family protein
    2.4e-06   24.4   3.9    2.4e-06   24.4   2.7    1.9  2  TIGR02900 spore_V_B: stage V sporulation protein B


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  145.1   6.3   2.8e-46   5.8e-43       1     198 [.       3     206 ..       3     234 .. 0.92
   2 !   93.3   5.5   1.5e-30   3.1e-27     197     376 ..     249     437 ..     243     451 .. 0.92

  Alignments for each domain:
  == domain 1    score: 145.1 bits;  conditional E-value: 2.8e-46
    TIGR00797   1 PailaniaqpllslvDtafvGhlg..pveLaavglgslvlmvliiillglltattalvaqavGagnqqrlsrsasqslllalllgllvavvlifaakpllslmg...adeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilifkfglGivGaAlAtvisqylmflllllyilk.akkv 198
                  Pa+++++++pl++l+DtafvG+ +  +++La+ g ++ +l++++ ++ +l t tt+lv+q+ +ag+ + ++  + q+l la+llg+ ++ vl+ + +pll+ mg   +  + +++a ++l ++ +++pav+++ a++g+lrG  dt+t+++i++ +n++ni Ld++li ++++G++GaA+At+ ++++ ++ lll++ +  ++v
  MMETSP1061-20121228|34713_1   3 PALAGLAIDPLMTLADTAFVGRTSddATALAGMGSAAALLTFAFYLFNFLCTVTTPLVSQRRAAGDDRGAIKIGGQALSLAMLLGITLSGVLVGFSDPLLKAMGigkTGIAARSYALSFLGVRAIAAPAVFVNSASTGILRGYLDTRTTFVILLGSNLVNISLDVVLIWWLRMGPKGAAIATTTTEWICAVSLLLILAGiIPSV 206
                  99*********************9999*****************************************************************************8655566778999**********************************************************************99998888887664444 PP

  == domain 2    score: 93.3 bits;  conditional E-value: 1.5e-30
    TIGR00797 197 kvdlknegllkpdwealkrllklglplllrvilvsflvtllallvarlG........stalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpkrakevarvalklglllglvlaiililf..refiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawvi 376
                  k+ +++  l+ p+we +++l+  +  + +r+++++++++ +a++++r+G        s+++Aahq+alq+++l++++ + la+A +alv+ +lG +d+  +++v ++++  +++lg++la+ l+++  + f++ lft+d++ +++ + ll+++++ qp++++ f  dGvl+Ga+ +++ a ++v+s+++ 
  MMETSP1061-20121228|34713_1 249 KIAVTP-ALKIPSWEEIQPLVVASSSVFVRTFMLQLSIAGAAAMATRSGegagseaaSASIAAHQIALQLWLLCSFVCDALAAASQALVADRLGREDAVGVRDVSKTIFVYSFVLGSILAAALGVGnySGFLLNLFTSDKSTQDALKPLLLLLVGAQPLNSFVFAADGVLQGASLFAYQAKSMVLSVVIA 437
                  667775.556699***********************************977777777789***************************************************************998224679****************************************************998875 PP

>> TIGR02900  spore_V_B: stage V sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.4   2.7   1.2e-09   2.4e-06     246     423 ..       9     191 ..       5     207 .. 0.87
   2 ?   -0.8   0.1     0.049     1e+02     280     330 ..     317     367 ..     298     451 .. 0.61

  Alignments for each domain:
  == domain 1    score: 24.4 bits;  conditional E-value: 1.2e-09
    TIGR02900 246 lletllvpkrLvlaGvaaseAlslyGklsgmalsllllPavItsslstalvPdisealakknyklvekRieqalkislllglitvvillviadelgklly.krddlg......efikvlalsvlflylsatlqsiLqgLgkqkvalrnslivaivkiillfvLtsipslnilGaalaliitsvlv 423
                  ++++l+     +  G +   A++l G   g a  ll++   + + l+t+  P +s+  a ++     k   qal +++llg++   +l+ ++d+l+k +  ++++++      +f+ v a+ ++ +++++++++iL+g    ++ +++ l   +v+i l  vL     ++  Gaa+a  +t  + 
  MMETSP1061-20121228|34713_1   9 AIDPLMTLADTAFVGRTSDDATALAGM--GSAAALLTFAFYLFNFLCTVTTPLVSQRRAAGDDRGAIKIGGQALSLAMLLGITLSGVLVGFSDPLLKAMGiGKTGIAarsyalSFLGVRAIAAPAVFVNSASTGILRGYLDTRTTFVILLGSNLVNISLDVVLIWWLRMGPKGAAIATTTTEWIC 191
                  577888888888899999999999996..77788999************************999999999**************************9996666665523333379********************************************99999999999999999988876554 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.049
    TIGR02900 280 llllPavItsslstalvPdisealakknyklvekRieqalkislllglitv 330
                  l ll +++  +l+ a    +++ l +++   v++  + ++ +s++lg i  
  MMETSP1061-20121228|34713_1 317 LWLLCSFVCDALAAASQALVADRLGREDAVGVRDVSKTIFVYSFVLGSILA 367
                  444444444444444444444444444444444444444444444444332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (478 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2426.57
//
Query:       MMETSP1061-20121228|34726_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.1    7.4   8.6        1.2    7.2   5.9    1.1  1  TIGR00621 ssb: single-stranded DNA-binding protein
        6.2    2.9  11.7        6.5    2.8   8.1    1.0  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
        8.3    4.1   9.1        9.2    4.0   6.3    1.0  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
        9.5    2.3  15.7         10    2.2  10.8    1.0  1  TIGR03490 Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family


Domain annotation for each model (and alignments):
>> TIGR00621  ssb: single-stranded DNA-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.2   5.9    0.0012       1.2      89     144 ..       6      61 ..       1      74 [. 0.48

  Alignments for each domain:
  == domain 1    score: 7.2 bits;  conditional E-value: 0.0012
    TIGR00621  89 dqngqkrskteiiadnl.qlldls..akaqggekelneesgesqqqapqesqqeaqatg 144
                  + n++k s+t  +a+ l ++++++  a ++ +++++++ +++++qq+ q+   e+q+++
  MMETSP1061-20121228|34726_1   6 NSNNNKTSTTPATATMLpETVQSNpnADSDSNSDSNSRAKEDEEQQQHQQ---EQQQNS 61 
                  45777788888888877777777742222222222222222222222222...222222 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   8.1    0.0064       6.5     320     378 ..       6      63 ..       1      74 [. 0.50

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.0064
    TIGR02442 320 ekeekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeae 378
                  +++++k ++++++a++ +e+ + +  + +++s+++++++ ++d+e++++++e+++++ e
  MMETSP1061-20121228|34726_1   6 NSNNNKTSTTPATATMLPETVQSN-PNADSDSNSDSNSRAKEDEEQQQHQQEQQQNSRE 63 
                  445555556666666666666665.3444333333344444455444444444444433 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   6.3     0.009       9.2      63     115 ..      19      63 ..       2      77 .. 0.28

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.009
    TIGR03499  63 eeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeaeeelrk 115
                  +  + ++++++++++++++++++++        a++++e++++++e++++ r+
  MMETSP1061-20121228|34726_1  19 ATMLPETVQSNPNADSDSNSDSNSR--------AKEDEEQQQHQQEQQQNSRE 63 
                  1112222222222222222222211........11111111111111122222 PP

>> TIGR03490  Mycoplas_LppA: mycoides cluster lipoprotein, LppA/P72 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  10.8      0.01        10      29      88 ..       3      61 ..       1      71 [. 0.39

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.01
    TIGR03490 29 snskqpekkpeakpeenkPkkpkkpdnkeksensnnks.nseekdeeepkskkpekkpdps 88
                 +n++++++k    ++    + p+  +++ +++  +n++ ns  k++ee ++++ e++ ++s
  MMETSP1061-20121228|34726_1  3 NNNNSNNNKTS-TTPATATMLPETVQSNPNADSDSNSDsNSRAKEDEEQQQHQQEQQ-QNS 61
                 23333333333.222224444444444444444444442333333333333333333.333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      201  (0.0490005); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.36
# Mc/sec: 285.98
//
Query:       MMETSP1061-20121228|34739_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|34740_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|34727_1  [L=531]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (531 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 2336.21
//
Query:       MMETSP1061-20121228|34730_1  [L=635]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (635 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2993.32
//
Query:       MMETSP1061-20121228|34755_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 243.14
//
Query:       MMETSP1061-20121228|34756_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 479.96
//
Query:       MMETSP1061-20121228|34795_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 890.93
//
Query:       MMETSP1061-20121228|34800_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 597.42
//
Query:       MMETSP1061-20121228|34801_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 514.76
//
Query:       MMETSP1061-20121228|34803_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00039   17.4   0.7    0.00057   16.8   0.5    1.3  1  TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component
    0.00039   17.4   0.7    0.00057   16.8   0.5    1.3  1  TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component


Domain annotation for each model (and alignments):
>> TIGR00359  cello_pts_IIC: PTS system, cellobiose-specific IIC component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.5   2.8e-07   0.00057     214     297 ..     172     256 ..     146     260 .] 0.78

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.8e-07
    TIGR00359 214 tPlaslgsslvgtlviefvvklLWffGlhGaliitallnpillsaldeniaayqageelphilakqfldif.vnlGGsGatLalv 297
                    ++ lg + + ++ ++ ++ +L + G   +++i+ +l pi+ sal++n  +y ++++  ++    f+ +  + lGG+Ga +a+ 
  MMETSP1061-20121228|34803_1 172 LTVLLLGTVTTLAIYVNDLTFVLSISGATMSSLIIYILPPIMFSALVQNCCCYVNEDTERDVKLGTFMMVLgIVLGGAGACVAVQ 256
                  4456666666666666666666666666667889********************999999998888888888********99975 PP

>> TIGR00410  lacE: PTS system, lactose/cellobiose family IIC component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.5   2.8e-07   0.00057     214     297 ..     172     256 ..     146     260 .] 0.78

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.8e-07
    TIGR00410 214 tPlaslgsslvgtlviefvvklLWffGlhGaliitallnpillsaldeniaayqageelphilakqfldif.vnlGGsGatLalv 297
                    ++ lg + + ++ ++ ++ +L + G   +++i+ +l pi+ sal++n  +y ++++  ++    f+ +  + lGG+Ga +a+ 
  MMETSP1061-20121228|34803_1 172 LTVLLLGTVTTLAIYVNDLTFVLSISGATMSSLIIYILPPIMFSALVQNCCCYVNEDTERDVKLGTFMMVLgIVLGGAGACVAVQ 256
                  4456666666666666666666666666667889********************999999998888888888********99975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1372.69
//
Query:       MMETSP1061-20121228|34828_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 432.63
//
Query:       MMETSP1061-20121228|34836_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 501.56
//
Query:       MMETSP1061-20121228|34861_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 1493.56
//
Query:       MMETSP1061-20121228|34872_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|34865_1  [L=1338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     1e-157  524.7   0.1   1.2e-145  484.8   0.1    3.0  3  TIGR01051 topA_bact: DNA topoisomerase I
    1.9e-58  195.8   0.2    3.6e-31  105.4   0.0    3.7  2  TIGR01054 rgy: reverse gyrase
    5.1e-55  184.7   0.2    8.5e-36  121.2   0.0    3.2  3  TIGR01057 topA_arch: DNA topoisomerase I
      5e-42  142.0   0.6    3.3e-41  139.4   0.4    2.4  2  TIGR01056 topB: DNA topoisomerase III


Domain annotation for each model (and alignments):
>> TIGR01051  topA_bact: DNA topoisomerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  484.8   0.1  1.2e-148  1.2e-145       1     507 [.     109     672 ..     109     678 .. 0.87
   2 !   36.2   0.0   7.2e-13   7.4e-10     511     617 ..     712     823 ..     706     837 .. 0.67
   3 ?   -2.8   0.0      0.46   4.7e+02     599     621 ..    1018    1040 ..    1002    1046 .. 0.81

  Alignments for each domain:
  == domain 1    score: 484.8 bits;  conditional E-value: 1.2e-148
    TIGR01051   1 lvivESPaKaktikkyLgk.........eyeveasvGHirdlpksasdvdekyarlgvdvekdfepeyvvlkekkkvvkelkklakkadevylAtDeDREGEaiawHlaellkeklkv.................lkRivFnEitkkairealkkpr.eidlnlVeaqeaRrilDrlvGyklspllwkkvakglSAGRVqSvalrliverEreikaFkpeeywdvdaklekkk....eekfeakllevkgkklkaksdld.................lldeaeakalkeklkke....elaveeaeekekkskpkppfitstLqqeasrkLgfsakktmsiAqrLYEgvevkekkvglitYmRtDsvrlseeaveearkliekeyg..keylaekp...krykkkekna.......qeAHEairPt....svlltpeelkkelkkdelrLYeLiwkrtvAsqmadakleslsvrlaaekg....evkfkasgrklkfdGflkvykelkddekeekekeLpklkegdkvklkevkseehetkppaRyteaslvkeLEelgiGRPStYasiisvildRgYv 507
                  lv+vESP+K +ti k+L++         ++++++s+GHir++p++ ++  ++    g+d+++d++p y+v+++k++++ el++l++ +++++lAtD+DREGEa+awHl+ell+ +++                    R+ F Eit+kai++a+++p  ++  nlV+aq+aRr+lDrl G+++sp+lwkk+a+glSAGRVqSv + + v+rEre+  F+ +eyw v++++++ +    +  +e++l++++g+ l+ ++  d                  l e+ a ++++ ++++    +++ve+  ++++k+kp+ pfits+Lqq+a+r+Lg+s++  m+ Aq+LYE+        g+i+YmRtDs++lse+a +++++ i +++g  ++y++e +   k+ +k +k++       q AHEairP+      +++pe+l   ++k +++LY+Li++r vAs m++   +++s+++a+ ++    ev f++sg+ ++ +G++ vy  + d     k+ +Lp+l+eg+k+ +  vk  +h+t+ppaRyteas+++eLE +g+GRPStYa +++ + dR Y+
  MMETSP1061-20121228|34865_1 109 LVVVESPSKCQTISKILQQyvkennlgyDFVITSSMGHIRNIPQKKTS--KDQKIAGIDLDNDYSPTYEVIEGKENMLLELQELSAATQQLILATDDDREGEAMAWHLLELLEGEDNPflndtksggtaardkqqPLRVRFTEITRKAIVDAIENPEsSLRDNLVQAQQARRVLDRLAGFTVSPILWKKIAPGLSAGRVQSVGMAMTVQRERERLTFQETEYWSVKGNFSAFDkkeiDPLLETNLISINGQTLASGT-ADfnpkqtnqltpasqnklHLTEKLAAEFANLIQTKgdrwHWNVEKVASSQRKQKPPLPFITSSLQQDANRRLGLSVSGSMRSAQQLYEK--------GFISYMRTDSTHLSEDARNAIQQEIVNDFGghDKYVSEIEnhgKKSSKSSKSSndkkpdpQAAHEAIRPAvrenGRFVKPEDLPVDFDKAAVELYRLIYQRAVASHMTPQISNQTSITIAGVSDhddtEVLFRTSGSVVIDPGYTSVYPRQVDS----KSPILPPLEEGQKMFCDGVKGLAHTTQPPARYTEASFIQELEAQGVGRPSTYAGTVQSLRDRCYI 672
                  8************88764322233333389***************554..4555679*******************************************************9887655555566777666655456*******************736999****************************************************************998876644566778999*********9976.5556**************9788888888877665442233789**********************************************8........*****************************96668**98663332222222211222233399*******974323589*****************************************9876666779********************98866....789*************************************************************9 PP

  == domain 2    score: 36.2 bits;  conditional E-value: 7.2e-13
    TIGR01051 511 kkalvptelgevvtdllekhfkelvdvdFtakmEkeLDeiaegk.....aewkevlkeFylgfeekvekalkklveekkeeiekkekekikkkcekcgkelvvklgkyGkfl 617
                  +  lvp+  ++vvt+llek+ k +vd  Fta+mE+ LD+ia+ +     +e++++l+eFy+g+e   +k        +++  ++ +  + + +  + ++++ + +g  G+++
  MMETSP1061-20121228|34865_1 712 RGPLVPSLSAFVVTSLLEKYCKMYVDPTFTARMEERLDKIANSEievseNERVSYLNEFYKGEEGLASKIDYIDKYVEADIARRADLPALAWNSTENSEDIGLFIGPWGPYV 823
                  56799*********************************9998761111156788********99855542222222222222222233333444444456666666666665 PP

  == domain 3    score: -2.8 bits;  conditional E-value: 0.46
    TIGR01051  599 cekcgkelvvklgkyGkflacsn 621 
                    ek+g  + vk g++G++++ ++
  MMETSP1061-20121228|34865_1 1018 GEKEGAMIAVKRGRFGAYINWNK 1040
                   4788999************9865 PP

>> TIGR01054  rgy: reverse gyrase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   80.1   0.1   1.6e-26   1.6e-23     601     828 ..     109     320 ..      96     345 .. 0.75
   2 !  105.4   0.0   3.5e-34   3.6e-31     854    1106 ..     393     672 ..     364     764 .. 0.75

  Alignments for each domain:
  == domain 1    score: 80.1 bits;  conditional E-value: 1.6e-26
    TIGR01054 601 LlvvesPnkaRtianFfGkPsvrkiensvvyevavgdlnlvitaslghvldlvtde.....gfyGvkienelayvpvYtsikkvrdcgeqftdekdellekcesekiedskeiieilReladevdevliatDpDteGekigyDlalal....rpynrnik.............RveFhevtkrailealeslr.sldenlvkaqvvRRieDRWiGFrlsqklwekFnkkylsaGRvqtPvLGWiieRykey 828
                  L+vvesP+k  ti++         i ++ v e  +g +++vit+s+gh+ ++ +++     ++ G++ +n+  y p Y++i                          e +++++ +l el+   +++++atD D+eGe +++ l  +l    +p+ ++ k             Rv+F e+t++ai++a+e+++ sl +nlv+aq  RR+ DR  GF++s +lw+k   + lsaGRvq   +   ++R +e 
  MMETSP1061-20121228|34865_1 109 LVVVESPSKCQTISK---------ILQQYVKENNLG-YDFVITSSMGHIRNIPQKKtskdqKIAGIDLDND--YSPTYEVI--------------------------EGKENMLLELQELSAATQQLILATDDDREGEAMAWHLLELLegedNPFLNDTKsggtaardkqqplRVRFTEITRKAIVDAIENPEsSLRDNLVQAQQARRVLDRLAGFTVSPILWKKIA-PGLSAGRVQSVGMAMTVQRERER 320
                  666666666666664.........334445555554.5666666666666655444333335556665544..66666666..........................567788899***************************9887633335887776555555555566669******************988******************************86.88********9999999998875 PP

  == domain 2    score: 105.4 bits;  conditional E-value: 3.5e-34
    TIGR01054  854 leakelkkdekevevkvveekeeekpPlPPyttdtlLedankrlglsakeimkiaqeLFelGlitYhRtdstRvsddG.mrvakeylkkr..................lleellkpRewgegGaheciRPtrPldtddleellkegviklektrnhlkvYdliFrRFiasqmkeakveveeitlkagleekee......gvveikeegfslvyplklkkerri....ekseslkvldkelrkvpkvyl..ytegeivklmkerGiGRPstYakivekllergYv 1106
                    +  ++k d    +v++v++ +++++P+ P+ t  l +dan+rlgls++  m+ aq+L+e G+i Y Rtdst  s+d    + +e ++                       +  ++++   + ahe+iRP     + +  +++k + + +   + ++++Y li++R +as m +   + + it+  + +++ +          +   g++ vyp ++ ++  i    e+ +++  + ++       ++  yte++ ++++  +G+GRPstYa  v+ l++r Y+
  MMETSP1061-20121228|34865_1  393 ANLIQTKGDRWHWNVEKVASSQRKQKPPLPFITSSLQQDANRRLGLSVSGSMRSAQQLYEKGFISYMRTDSTHLSEDArNAIQQEIVNDFgghdkyvseienhgkkssKSSKSSNDKKPDPQAAHEAIRPA----VRENGRFVKPEDLPVDFDKAAVELYRLIYQRAVASHMTPQISNQTSITIAGVSDHDDTevlfrtSGSVVIDPGYTSVYPRQVDSKSPIlpplEEGQKMFCDGVKGLAHTTQPParYTEASFIQELEAQGVGRPSTYAGTVQSLRDRCYI 672 
                   33455667777889*****9999999*************************************************998455666655433222222222232222111111222334445578*******6....678899**********************************99999999987555443300110023344567*******887665433122133333333333333333333368********************************97 PP

>> TIGR01057  topA_arch: DNA topoisomerase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.7   0.0   5.6e-19   5.7e-16      30     222 ..     128     335 ..     106     343 .. 0.85
   2 !  121.2   0.0   8.3e-39   8.5e-36     251     502 ..     398     673 ..     368     681 .. 0.81
   3 !    3.8   0.0    0.0029         3     516     549 ..     724     757 ..     714     793 .. 0.77

  Alignments for each domain:
  == domain 1    score: 55.7 bits;  conditional E-value: 5.6e-19
    TIGR01057  30 yyelerdgkkiivasavGhlfglaekes.geypv....fdleWvPifeadkgkeyvkkylkvlkklakgadeyivacdydieGeliGfkalkyacgvek..................akrmkfstltkkdirrayknle.eidyglvdaGaarhildwlfGvnlsralmeaikkaagrfvvlsaGrvqgPtlailverereikkfvPkpywvikill 222
                  y + ++ g   +++s++Gh+  + +k++  + ++    +d ++ P +e+  gke   + l  l++l++ +++ i a+d d eGe + ++ l+   g+++                    r++f+ +t+k i+ a +n+e  +  +lv+a +ar +ld l G  +s  l + i         lsaGrvq+  +a+ v+rere  +f    yw +k  +
  MMETSP1061-20121228|34865_1 128 YVKENNLGYDFVITSSMGHIRNIPQKKTsKDQKIagidLDNDYSPTYEVIEGKE---NMLLELQELSAATQQLILATDDDREGEAMAWHLLELLEGEDNpflndtksggtaardkqqPLRVRFTEITRKAIVDAIENPEsSLRDNLVQAQQARRVLDRLAGFTVSPILWKKIA------PGLSAGRVQSVGMAMTVQRERERLTFQETEYWSVKGNF 335
                  55555667889*********99877666434444222345679******88887...568899******************************999998899999999997655544459*******************89***************************98663......369******************************99655 PP

  == domain 2    score: 121.2 bits;  conditional E-value: 8.3e-39
    TIGR01057 251 vkksk.sakveevrvkrsklkPpppfdlGtlqreayrvfglsPkktqeiaqelyeealisyPrtssqklPksin...yrkilknlakkPlyreaaellkek..gelkPveGkkedp..ahPaihpt....Ge..iPke...elskdekkvydlivrrflavfseeaireklkvkl......eikeekfklsgkrvvkkGWlevy.kyskleekelPelkkgdkikvvkvkvekketkpParydkaslikelekrglGtkatraeiieklykrgyie 502
                   k+++ + +ve+v + ++k+kPp pf    lq++a+r +gls       aq+lye+++isy rt+s  l ++ +    ++i++++  + +y + +e   +k  ++ k  + kk dp  ah ai p+    G   +P++   ++ k   ++y li +r +a  + + i +++++++      +++e  f+ sg+ v + G+ +vy + +  +   lP+l++g+k+    vk   + t+pPary++as i+ele +g+G  +t a  ++ l +r yi 
  MMETSP1061-20121228|34865_1 398 TKGDRwHWNVEKVASSQRKQKPPLPFITSSLQQDANRRLGLSVSGSMRSAQQLYEKGFISYMRTDSTHLSEDARnaiQQEIVNDFGGHDKYVSEIENHGKKssKSSKSSNDKKPDPqaAHEAIRPAvrenGRfvKPEDlpvDFDKAAVELYRLIYQRAVASHMTPQISNQTSITIagvsdhDDTEVLFRTSGSVVIDPGYTSVYpRQVDSKSPILPPLEEGQKMFCDGVKGLAHTTQPPARYTEASFIQELEAQGVGRPSTYAGTVQSLRDRCYIG 673
                  233331468************************************************************998652224677888888888888777654443478899999**998778988877522225422455444467888999************************99444332344567*****************6677788888************************************************************95 PP

  == domain 3    score: 3.8 bits;  conditional E-value: 0.0029
    TIGR01057 516 vietlkryvpeiiseeltrefekklediregkit 549
                  v   l++y++  +++ +t ++e++l++i +  i+
  MMETSP1061-20121228|34865_1 724 VTSLLEKYCKMYVDPTFTARMEERLDKIANSEIE 757
                  66789***********************987764 PP

>> TIGR01056  topB: DNA topoisomerase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.4   0.4   3.2e-44   3.3e-41       3     495 ..     108     649 ..     107     677 .. 0.83
   2 ?   -2.2   0.0      0.21   2.1e+02     557     581 ..     733     757 ..     725     766 .. 0.83

  Alignments for each domain:
  == domain 1    score: 139.4 bits;  conditional E-value: 3.2e-44
    TIGR01056   3 rlvlaEkPslardlakvlkkkkkgnGyleigdgvvvtWalGHLvelaePeeYdekykkwrledlplvpe.klklkvkkktkkqfnvikrllkekevdevviAtDadREGeliareildklkvrk................kvrvkRlwlssltdkairkalkklrskseteslyksavaRaraDWlvGinltRaftllgreaGfdgvlsvGRvqtPtLalvvkReeeienFvakkyyevkAtiak.deeeltaewqd..........................ykdeeerllhedlaervvkdlsqkp....avvtelkkerkkesaPllydLsaLqedaakrfglsAkevLdiaqkLYEkhkLitYPRtDsrylsedekeelkevl.ealkvkakallpvkkldekirnr..lvndkkve...dHhaiipteesl.al.......sdLseeErkvYkliakrylaqflpkaeyeetkiele.i.....gkelFeakgkvlqeaGwkalldkkeedeEdedttlPalqkgdelavekleelekqtkPPkrytegtLlsAmt 495
                  +lv+ E Ps+ + ++k+l++  k+n   ++g + v+t ++GH+ +   P++  +k +k     + l ++ +  ++v++  ++ +  +++l      ++++ AtD dREGe +a ++l+ l+ ++                k++  R+ ++++t kai  a+++  s+ +  +l ++  aR   D l G  ++  + ++     +   ls GRvq+  +a+ v+Re+e  +F+  +y+ vk + +  d++e+   ++                             ++++  l e+la++  + ++ k+      v ++   ++k+ +Pl++  s+Lq+da++r gls    +  aq+LYEk   i Y RtDs +lsed ++ +++++ +   +++k    +++ ++k+ ++    ndkk +   +H ai p  ++           +d   +  ++Y li +r +a  +  +  ++t i+++ +      + lF++ g v+ ++G+ +++ ++ ++       lP l+ g+++ +++++ l + t+PP+ryte+  ++ ++
  MMETSP1061-20121228|34865_1 108 KLVVVESPSKCQTISKILQQYVKEN---NLGYDFVITSSMGHIRNI--PQKKTSKDQKIA--GIDLDNDySPTYEVIEGKENMLLELQELSA--ATQQLILATDDDREGEAMAWHLLELLEGEDnpflndtksggtaardKQQPLRVRFTEITRKAIVDAIENPESSLR-DNLVQAQQARRVLDRLAGFTVSPILWKK-----IAPGLSAGRVQSVGMAMTVQRERERLTFQETEYWSVKGNFSAfDKKEIDPLLETnlisingqtlasgtadfnpkqtnqltPASQNKLHLTEKLAAEFANLIQTKGdrwhWNVEKVASSQRKQKPPLPFITSSLQQDANRRLGLSVSGSMRSAQQLYEK-GFISYMRTDSTHLSEDARNAIQQEIvNDFGGHDKYVSEIENHGKKSSKSskSSNDKKPDpqaAHEAIRPAVRENgRFvkpedlpVDFDKAAVELYRLIYQRAVASHMTPQISNQTSITIAgVsdhddTEVLFRTSGSVVIDPGYTSVYPRQVDSKSP---ILPPLEEGQKMFCDGVKGLAHTTQPPARYTEASFIQELE 649
                  699********************99...67899*********9765..777667666655..555544413468888888888888888877..999*******************99876443334444555666666699999******************887665.79***********************999.....9999*********************************987652446665555556677999************99988766677888899*******99999998533336888888999**************************************.9*****************999876538999999999999998888766422689***754449****9986643122112222356778899*********999998887888888877535222113468******************99887766...9*******************************9998665 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.21
    TIGR01056 557 elltkPdltaeWEqvLseiaagklk 581
                  ++   P +ta+ E+ L++ia+ +++
  MMETSP1061-20121228|34865_1 733 KMYVDPTFTARMEERLDKIANSEIE 757
                  56778***************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.78u 0.15s 00:00:00.93 Elapsed: 00:00:00.60
# Mc/sec: 2943.36
//
Query:       MMETSP1061-20121228|34879_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.1e-87  289.4   0.0    6.4e-87  289.1   0.0    1.0  1  TIGR00417 speE: spermidine synthase
    0.00041   17.9   0.0     0.0007   17.2   0.0    1.4  1  TIGR00537 hemK_rel_arch: putative methylase
     0.0017   15.5   0.0     0.0024   15.0   0.0    1.2  1  TIGR00755 ksgA: dimethyladenosine transferase
  ------ inclusion threshold ------
      0.014   11.9   0.0      0.024   11.2   0.0    1.3  1  TIGR01078 arcA: arginine deiminase
       0.04   11.2   0.0      0.056   10.7   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
      0.042   11.1   0.0       0.07   10.4   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
      0.048   10.0   0.0      0.067    9.5   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1


Domain annotation for each model (and alignments):
>> TIGR00417  speE: spermidine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  289.1   0.0   1.1e-89   6.4e-87      18     270 ..      62     317 ..      45     318 .. 0.97

  Alignments for each domain:
  == domain 1    score: 289.1 bits;  conditional E-value: 1.1e-89
    TIGR00417  18 kvLyeeksefqdvlifeteefGkvlvlDgvvqtterDefiyheliahvpllahenpkkvlviGGGDGgvlrevvkhksveeitlveiDekvielskkylpkls.galddervdlkidDGvkflrdt..ekkfDviivDstdPvGpaetlfekefyelvkkalnedGvivaqseslllqlelikdlkrkvkevfekvelylaaiPtypsgllsfivaskn.klsnleveeerikeeaedlktkyynkeihkaafvlPk 270
                  ++L++e+se+q++lif+++++Gkv+++Dg++q+terD f +he+++h+pl++h +p++vl++GGGDG +l+ev++hk v+++t+veiD  vi++skk l+ +    +d++rv+++  D  ++++d   ++kfDvi+ D+ dP Gp+etlfe +fy+ +++al ++G++ +q e+++++ eli+dl   +k++f ++e+ ++ +P yp g+++fiva k  +++  +v+ +r  ++a ++++++yn+++h+aafvlP+
  MMETSP1061-20121228|34879_1  62 SILFHEHSEYQEILIFQSAKYGKVMAIDGILQLTERDAFTFHEMMTHLPLFSHRKPEHVLIVGGGDGLILQEVLRHKEVKKVTMVEIDPLVIHASKKCLKVVPpEIYDEPRVEIIHADAAEYVQDPenHNKFDVILQDALDPLGPGETLFEPKFYDYMHDALRPGGIVCTQGENVWIHFELIRDLVVCCKDIFGHAEYAVTSVPSYPCGQIGFIVARKGlDNRSCNVPVRR-PDAAFQKQLEWYNPQMHRAAFVLPQ 317
                  79****************************************************************************************************96789*****************975589***************************************************************************************98899999999999.56999*******************7 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.0   1.2e-06    0.0007      16      88 ..     113     198 ..     106     230 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 1.2e-06
    TIGR00537  16 relknddvleiGaGtGlvairl..kekgkkivatdinPfavkllkenakl......nnveldvlesdlfenveg.....kfdvilf 88 
                  +++k+++vl +G G Gl+   +  ++  kk++ ++i+P  ++  k+  k+      ++  ++++++d +e v++     kfdvil 
  MMETSP1061-20121228|34879_1 113 SHRKPEHVLIVGGGDGLILQEVlrHKEVKKVTMVEIDPLVIHASKKCLKVvppeiyDEPRVEIIHADAAEYVQDpenhnKFDVILQ 198
                  5789*************9766521344569*********99999987665222222455678999999988863333458999985 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   4.2e-06    0.0024      27      90 ..     114     186 ..      99     198 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4.2e-06
    TIGR00755  27 veesdvvlEiGpGlGaLTeellek..akkvvaiEiDkrlaekLrkkle.......leekleviegDalkldle 90 
                   ++++ vl +G G G + +e+l++   kkv+ +EiD+ ++++ +k l+        e ++e+i+ Da ++  +
  MMETSP1061-20121228|34879_1 114 HRKPEHVLIVGGGDGLILQEVLRHkeVKKVTMVEIDPLVIHASKKCLKvvppeiyDEPRVEIIHADAAEYVQD 186
                  567899**********9999997511578************99999999999998899********9887655 PP

>> TIGR01078  arcA: arginine deiminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0     4e-05     0.024     245     298 ..      63     115 ..      50     158 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4e-05
    TIGR01078 245 slfkneaefkkvlaiklpkkralmHLDtvltmvDkdkftvfpevekelkafsiy 298
                   lf++++e++++l+++ +k  ++m +D +l   ++d ft++  +++    fs +
  MMETSP1061-20121228|34879_1  63 ILFHEHSEYQEILIFQSAKYGKVMAIDGILQLTERDAFTFHEMMTHL-PLFSHR 115
                  58999**********************************98765544.334444 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   9.6e-05     0.056     159     204 ..     116     162 ..     106     236 .. 0.74

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 9.6e-05
    TIGR00406 159 kdkkviDvGcGSG.iLsiaalklgaakvvavDiDplavesarkNlel 204
                  k ++v+ vG G G iL   +   +++kv+ v+iDpl +++++k l+ 
  MMETSP1061-20121228|34879_1 116 KPEHVLIVGGGDGlILQEVLRHKEVKKVTMVEIDPLVIHASKKCLKV 162
                  5578999******778999999********************98875 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00012      0.07      85     161 ..     113     197 ..     103     199 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00012
    TIGR03534  85 kkkeklkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke.....veflksdlleal...eekgkfdliv 161
                  +++++ +vl +g G G I   ++ + +  kv++v+i++  ++ ++k +k    +      ve++++d  e +   e+++kfd+i+
  MMETSP1061-20121228|34879_1 113 SHRKPEHVLIVGGGDGLILQEVLRHKEVKKVTMVEIDPLVIHASKKCLKVVPPEIydeprVEIIHADAAEYVqdpENHNKFDVIL 197
                  5666789**********************************9999999987666556789*********99999899999***96 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   0.0   0.00011     0.067     283     345 ..     117     179 ..     100     198 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 0.00011
    TIGR04074 283 arsvlDlGcGegkLlkaLlaekqfekivgvdvsareLekakrrlkldrlsekqrervellqss 345
                   ++vl +G G+g +l+++l++k+++k++ v++    ++++k+ lk+   +   + rve++++ 
  MMETSP1061-20121228|34879_1 117 PEHVLIVGGGDGLILQEVLRHKEVKKVTMVEIDPLVIHASKKCLKVVPPEIYDEPRVEIIHAD 179
                  567999************************************999988888888999998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 2001.83
//
Query:       MMETSP1061-20121228|34891_1  [L=273]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-54  182.0   0.0    3.4e-54  181.8   0.0    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.6e-48  163.0   0.0    7.6e-48  160.8   0.0    1.8  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.4e-45  152.4   0.0    3.9e-45  152.2   0.0    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.2e-40  137.6   0.0    1.3e-40  137.4   0.0    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.8e-36  123.7   0.0    3.1e-36  122.9   0.0    1.3  1  TIGR02415 23BDH: acetoin reductases
    1.5e-34  117.3   0.0    2.2e-34  116.7   0.0    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.5e-33  114.0   0.0    1.8e-33  113.8   0.0    1.0  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
      9e-28   95.3   1.8    5.6e-27   92.6   1.2    1.8  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    3.1e-19   67.1   0.0    4.1e-19   66.7   0.0    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.3e-11   41.9   0.1      1e-08   32.5   0.0    2.1  2  TIGR02685 pter_reduc_Leis: pteridine reductase
    8.9e-11   39.3   0.2    1.8e-10   38.3   0.1    1.5  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
      3e-07   28.0   0.0    5.1e-07   27.2   0.0    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00039   18.3   1.2    0.00062   17.6   0.8    1.2  1  TIGR01915 npdG: NADPH-dependent F420 reductase
     0.0043   13.7   0.4     0.0095   12.5   0.2    1.6  2  TIGR02028 ChlP: geranylgeranyl reductase
  ------ inclusion threshold ------
      0.014   12.1   2.1       0.11    9.1   0.8    2.2  3  TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC


Domain annotation for each model (and alignments):
>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.8   0.0   1.2e-56   3.4e-54       1     246 [.      13     268 ..      13     270 .. 0.91

  Alignments for each domain:
  == domain 1    score: 181.8 bits;  conditional E-value: 1.2e-56
    TIGR01832   1 fsleGkvalvtGantGlGqgiavglaeaGadivgvgis..elsetqekveal.G.rkflslkadladeeaakalvdeaveeag...kidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGirvpsytasksavaGltkllanewak....kginvnaiaPGyletnntealradekrnaaileriPagrwGepedlagaavflassasdyvnGailavdGGwl 246
                  f+l G+va+vtG  tG+G g+a g+aeaGa++v vg++   l+e++ +++++ G +++ ++ ad+ + +++  l+++a + +g      il+nnaGi  r++a++++ + w   l++ l a f+l++a++  ++kq + g+i+nias  s+        y+a+ks+ +Gl++++a  +a     +++ vn i+PGy++t+ te++ ad++r+  + +r   gr   p+d+ g++v+l+s+as+yv+G++++vdGG+ 
  MMETSP1061-20121228|34891_1  13 FDLTGRVAIVTGGGTGIGAGLAQGMAEAGAKVVLVGRRpdRLEESATNINEVvGeERAFAVPADVLKYDEHPDLIQKAQDITGgttPPTILLNNAGINVRQKAENLTPEHWTVSLDLMLTAPFFLARAMSD-AMKQEKYGRIMNIASPQSYLAFPDSIPYAAAKSGNLGLARAMAEYFAPyhgfENVTVNNISPGYVKTELTESVFADTERAGRLAQRTLIGRNSVPDDMVGTVVYLSSEASSYVTGQTIPVDGGFT 268
                  99*********************************975325788888887652524577899******************998544568**************************************9986.668889********9999988888889****************99985323369*********************************************************************86 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.0   2.8e-50   7.6e-48       2     253 ..      18     268 ..      17     270 .. 0.91

  Alignments for each domain:
  == domain 1    score: 160.8 bits;  conditional E-value: 2.8e-50
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakeleeagg..evlalkadvtkeeeiadlieavaaefgsl...diLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAe....tgitanaicPgyvrtpLvekqiadqaktrgiseeqvvkevllkkqptkrfvtveevaelalflasdaaaqitGqalsldgGwt 253
                  +va+vtG ++Gig+++a+ +a+aGakvv+++ + + +e+ a++++e  g  ++ a++adv k++e  dli+++++  g++    iL+nnAGi   ++ e+  +e++   ++++lt++f + ra    mk++++Gri+nias +++ a++   +Y aaK g +Gl++++A   A     +++t+n i Pgyv+t L e  +ad  ++  +++ + +           r   ++++ +++++l+s+a+  +tGq++ +dgG+t
  MMETSP1061-20121228|34891_1  18 RVAIVTGGGTGIGAGLAQGMAEAGAKVVLVGRRPDRLEESATNINEVVGeeRAFAVPADVLKYDEHPDLIQKAQDITGGTtppTILLNNAGINVRQKAENLTPEHWTVSLDLMLTAPFFLARAMSDAMKQEKYGRIMNIASPQSYLAFPDSIPYAAAKSGNLGLARAMAEYFAPyhgfENVTVNNISPGYVKTELTESVFADTERAGRLAQRTLIG----------RNSVPDDMVGTVVYLSSEASSYVTGQTIPVDGGFT 268
                  89*******************************999998888888765411578899*******************99863336**************************************************************************************9997444468**************************9998766543..........3334789999************************8 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  152.2   0.0   1.4e-47   3.9e-45       1     238 [.      20     267 ..      20     268 .. 0.89

  Alignments for each domain:
  == domain 1    score: 152.2 bits;  conditional E-value: 1.4e-47
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelke.ag.vkaaavkldvsdeeevkelveeveeelg...eidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgllGnagqanYaasKaGligltkslakElas....rnitvnavaPGfietdmteklsekvkk..kileqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGGl 238
                  a+vtG++ giG+ +a+ +a++gakvv+  r + +++ee a++++e  g  +a av +dv + +e  +l++++++ +g      il+nnAGi   + + +++ e+w+  +++ L++ f +++a++ +m ++++Gri+ni+s  ++l  +    Yaa+K+G  gl++++a+ +a     +n+tvn ++PG+++t++te++  ++++  +++++  ++r + p+++  +v++L+s+++sy+tGq++ vdGG+
  MMETSP1061-20121228|34891_1  20 AIVTGGGTGIGAGLAQGMAEAGAKVVLVGR-RPDRLEESATNINEvVGeERAFAVPADVLKYDEHPDLIQKAQDITGgttPPTILLNNAGINVRQKAENLTPEHWTVSLDLMLTAPFFLARAMSDAMKQEKYGRIMNIASPQSYLAFPDSIPYAAAKSGNLGLARAMAEYFAPyhgfENVTVNNISPGYVKTELTESVFADTERagRLAQRTLIGRNSVPDDMVGTVVYLSSEASSYVTGQTIPVDGGF 267
                  79**************************76.5566777777777743414678899*************99999877332568*************************************************************************************9887533337******************98766554126789999***********************************7 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.4   0.0   4.9e-43   1.3e-40       1     240 [.      18     267 ..      18     269 .. 0.88

  Alignments for each domain:
  == domain 1    score: 137.4 bits;  conditional E-value: 4.9e-43
    TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvap.neerakewlqekevegfdvavvkadvssfeeakaavakveaelG...pvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGlkGqfGqanysaakaGliGftkalaqegak....kgvtvnviaPGyiatemvkavredvlkk..ivaqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGl 240
                  rva+vtGg  GiG+ +++ +a++G kvv   +  ++ ++++ + ++ v +     v adv +++e  + ++k ++  G   p  +l+nnaGi   +  + +t e+W+  +d  l++ f ++r + ++m++ ++Gri+ni+s            y+aak+G +G+++a+a+  a     ++vtvn i+PGy++te++++v +d  ++  + +   ++r + p+++  +v++l+se+++yvtG+t+ v+GG 
  MMETSP1061-20121228|34891_1  18 RVAIVTGGGTGIGAGLAQGMAEAGAKVVLVGRRpDRLEESATNINEVVGEERAFAVPADVLKYDEHPDLIQKAQDITGgttPPTILLNNAGINVRQKAENLTPEHWTVSLDLMLTAPFFLARAMSDAMKQEKYGRIMNIASPQSYLAFPDSIPYAAAKSGNLGLARAMAEYFAPyhgfENVTVNNISPGYVKTELTESVFADTERAgrLAQRTLIGRNSVPDDMVGTVVYLSSEASSYVTGQTIPVDGGF 267
                  89************************9976655155555555555555556667789************999888776222558*********9999************************************************************************99886222269*******************999876555899999**********************************96 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.9   0.0   1.1e-38   3.1e-36       1     251 [.      18     267 ..      18     269 .. 0.91

  Alignments for each domain:
  == domain 1    score: 122.9 bits;  conditional E-value: 1.1e-38
    TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakelkek..gtkavavkldvsdkseveeaveqaveklGel...dvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagvegspelsaysstkfavrgltqtaakeLak....kgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGl 251
                  +va+vtG++ GiG ++a+ +a+ G +v+++  +++ + e a +++e   + +a av +dv + +e  +++++a++  G+     +l+nnaG+++ +  +++t+e+     ++ +++ +f  +a ++++ k+++ G+i+n as  +  ++p    y+++k    gl+++ a+ +a+    + +tvn  +PG vkte++e++ +++ ++          + +++  +Gr+s P+d+ + v +l+se+s y+tGq+i vdGG+
  MMETSP1061-20121228|34891_1  18 RVAIVTGGGTGIGAGLAQGMAEAGAKVVLVGRRPDRLEESATNINEVvgEERAFAVPADVLKYDEHPDLIQKAQDITGGTtppTILLNNAGINVRQKAENLTPEHWTVSLDLMLTAPFFLARAMSDAM-KQEKYGRIMNIASPQSYLAFPDSIPYAAAKSGNLGLARAMAEYFAPyhgfENVTVNNISPGYVKTELTESVFADTERAG---------RLAQRTLIGRNSVPDDMVGTVVYLSSEASSYVTGQTIPVDGGF 267
                  79******************************************99633578***********************9998734469******************************9999888777766.56778***************************************985445679****************9988765543.........45667789**********************************7 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.7   0.0   8.2e-37   2.2e-34     411     671 ..      14     268 ..       6     273 .] 0.90

  Alignments for each domain:
  == domain 1    score: 116.7 bits;  conditional E-value: 8.2e-37
    TIGR02632 411 elarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGv...divvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaPdavlrGsgifagewrekraaaygieadkleefykkrsllkrevlpediaeavfllasdklekttGliitvdaGva 671
                  +l++rva+vtGg++GiG  +a+ +++ Ga vvl+    +++e+ a ++++  G+++a a+ +dv + ++    ++++    GG     i+ nnaGi v ++ e+ + e+W ++ld++ t  f++ar     + kq+  g ++ ias  + +a ++++ y+aak+ +  l+r +a   a++     + +  +v + s     ++++  ++++  +  + +   ++r+l++r+ +p+d+  +v +l s+ ++  tG++i+vd+G +
  MMETSP1061-20121228|34891_1  14 DLTGRVAIVTGGGTGIGAGLAQGMAEAGAKVVLVGRRPDRLEESATNINEVVGEERAFAVPADVLKYDEHPDLIQKAQDITGGTtppTILLNNAGINVRQKAENLTPEHWTVSLDLMLTAPFFLARAMSDAM-KQEKYGRIMNIASPQSYLAFPDSIPYAAAKSGNLGLARAMAEYFAPY----HGFENVTVNNIS----PGYVKTELTESVFADTERAGRLAQRTLIGRNSVPDDMVGTVVYLSSEASSYVTGQTIPVDGGFT 268
                  7899***********************************************************************99999999844459************************************9777766.5788899***********************************99998....444444443333....34566777888888888888899***************************************86 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  113.8   0.0   6.4e-36   1.8e-33       2     249 ..      16     268 ..      15     269 .. 0.89

  Alignments for each domain:
  == domain 1    score: 113.8 bits;  conditional E-value: 6.4e-36
    TIGR03206   2 kdkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairekggkaeavav..ditdrasvdaavaa...aeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaarvgssgeavyaackgglvafsktlarela....rhgitvnvvcpgptdtalledvkseaekpeklieaftraiplgrlgkpddlagailflasddaafitgqvlsvsgglt 249
                   ++vaivtggg gig+ + + +ae gakv ++    +  e+ a++i+e  g+ +a+av  d+ + +     +     ++ +  p  +l+nnag +v ++  +  + +w   + + lt  +++  a+ + m + k gri+nias  +         yaa k g + +++++a  +a     +++tvn + pg  +t l e v +++e++ +l +       +gr   pdd+ g++++l+s+ ++++tgq + v gg+t
  MMETSP1061-20121228|34891_1  16 TGRVAIVTGGGTGIGAGLAQGMAEAGAKVVLVGRRPDRLEESATNINEVVGEERAFAVpaDVLKYDEHPDLIQKaqdITGGTTPPTILLNNAGINVRQKAENLTPEHWTVSLDLMLTAPFFLARAMSDAMKQEKYGRIMNIASPQSYLAFPDSIPYAAAKSGNLGLARAMAEYFApyhgFENVTVNNISPGYVKTELTESVFADTERAGRLAQ----RTLIGRNSVPDDMVGTVVYLSSEASSYVTGQTIPVDGGFT 268
                  6799**********************************************998877754488776665544544000455566889**********************************************************************************99987662211578**************************99975....4569**********************************98 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.6   1.2   2.1e-29   5.6e-27       1     264 [.      15     267 ..      15     268 .. 0.86

  Alignments for each domain:
  == domain 1    score: 92.6 bits;  conditional E-value: 2.1e-29
    TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrl...dvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvaglkalpglahyaaakhGlvgltktlanelaey....girvnsihPtsvdtamiepeamrelfakreeaaraflpalpvsglvepedvadvvawlasdesryitGaqlavdaGa 264
                  l G+va++tG   G G   a  +a+ Ga ++ +   +  ++       +  +++e    v +   ++ a  adv k++e  + ++++ +  G      ++++naG+    +a +l++e+W   ld+ l+  +   +a+  a+ ++k  G i+ ++s  +  a+p +  yaaak G +gl++++a+  a+y    ++ vn i+P  v+t+++e     ++fa++e+a r   + +++     p+d+ + v++l+s+ s y+tG+ ++vd G 
  MMETSP1061-20121228|34891_1  15 LTGRVAIVTGGGTGIGAGLAQGMAEAGAKVVLVG--RRPDRLE----ESATNINE----VVG-EERAFAVPADVLKYDEHPDLIQKAQDITGGTtppTILLNNAGINVRQKAENLTPEHWTVSLDLMLTAPFFLARAMSDAMKQEK-YGRIMNIASPQSYLAFPDSIPYAAAKSGNLGLARAMAEYFAPYhgfeNVTVNNISPGYVKTELTE-----SVFADTERAGRLA-QRTLIGRNSVPDDMVGTVVYLSSEASSYVTGQTIPVDGGF 267
                  78***************************99753..4443332....22223333....222.2578999*****************99999763446***************************************999998777.899***************************************96666699***********9998.....8999998888776.6666666778999999*********************996 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.7   0.0   1.5e-21   4.1e-19       2     238 ..      21     267 ..      20     268 .. 0.81

  Alignments for each domain:
  == domain 1    score: 66.7 bits;  conditional E-value: 1.5e-21
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrs......dradaeesvaairaqggnarllkfdvadrvavrevleadiaehgayygvvl.nagiardaafpalseedwdavietnldgfynvihplvmpmirarkggriitlasvsgvmgnrgqvnysaakagligatkalavelak....rkitvnciapglidtemvaevekdlkealklvpmkrvgk...aeevaalaaflmsddaayvtrqvisvnggm 238
                  +vtg   gig  +a+ +a +g ++ +  r+      ++++ +e+v + ra  + a +lk+d       +    +di+   +   ++l nagi+  +    l+ e+w + ++  l + + + + +   m +  k gri+ +as    +     + y+aak+g +g ++a+a  +a      ++tvn i+pg ++te+ ++v  d ++a +l     +g+   ++++ + + +l s+ ++yvt q i v+gg+
  MMETSP1061-20121228|34891_1  21 IVTGGGTGIGAGLAQGMAEAGAKVVLVGRRpdrleeSATNINEVVGEERAFAVPADVLKYDEHPDLIQK---AQDITGGTTPPTILLnNAGINVRQKAENLTPEHWTVSLDLMLTAPFFLARAMSDAM-KQEKYGRIMNIASPQSYLAFPDSIPYAAAKSGNLGLARAMAEYFAPyhgfENVTVNNISPGYVKTELTESVFADTERAGRLAQRTLIGRnsvPDDMVGTVVYLSSEASSYVTGQTIPVDGGF 267
                  79*********************9987665222211456667777888888888888888866544333...35777666666665428****99999*****************9998888777666.667889***********************************99996223358*****************9999998887666555455422289**************************96 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.8   0.0    0.0013      0.35       3      50 ..      19      69 ..      17      95 .. 0.76
   2 !   32.5   0.0   3.7e-11     1e-08     129     263 ..     133     268 ..     100     271 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.8 bits;  conditional E-value: 0.0013
    TIGR02685  3 aalvtGaakriGrsiavklhqeGyrvvlhyrrs...aeaasslaaelnaer 50
                 +a+vtG+   iG  +a+ + + G +vvl  rr    +e+a+++ + + +er
  MMETSP1061-20121228|34891_1 19 VAIVTGGGTGIGAGLAQGMAEAGAKVVLVGRRPdrlEESATNINEVVGEER 69
                 89*************************988765111344444444444444 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 3.7e-11
    TIGR02685 129 aplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslq....irvngvapGlsllpdampeevkeeyrr.....kvplgqreasaeqiadvviflvskkakyitGtiikvdGGls 263
                  ap++l +a++  +k++      +   i+n++     +  +    y+ ak    Gl+r+ a  +a+++    + vn ++pG     ++++e+v  +  r     +  l  r++  +++   v++l s+ + y+tG +i vdGG++
  MMETSP1061-20121228|34891_1 133 APFFLARAMSDAMKQE------KYGRIMNIASPQSYLAFPDSIPYAAAKSGNLGLARAMAEYFAPYHgfenVTVNNISPGYV--KTELTESVFADTERagrlaQRTLIGRNSVPDDMVGTVVYLSSEASSYVTGQTIPVDGGFT 268
                  7777777776655332......3335888888888888888889*********************96555599*******74..44455555444444000114456668999999**************************85 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.1   6.6e-13   1.8e-10       2     259 ..      14     271 ..      13     273 .] 0.76

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 6.6e-13
    TIGR03325   2 klkdevvlvtggasglgralvdrfvaegarvavldksaaglee....leaahg.dkvvgvegdvrllddhkeavarcveafgkl...dtlipnagiwdystalvdipddrideafdevfeinvkgyllavkaalpalvasrgsviftvsnagfypn.gggalytaakhavvglvkelayelapy.....vrvngvapgglstdlrglksldladksissvplgdllksvlpigrmadaeeytgayvffatrgdtvpltgavlnydgglgvrg 259
                   l+++v++vtgg++g+g  l + +   ga+v ++ +  ++lee    ++++ g ++  +v  dv   d+h + +++  +  g      +l++nagi   + a  ++  ++   ++d +    + + ++ ++a   a+ + + + i+ ++    y +      y+aak   +gl + +a  +apy     v vn ++pg ++t+l             +    +  l +   igr ++ ++  g+ v++++++ +  +tg  +  dgg+   g
  MMETSP1061-20121228|34891_1  14 DLTGRVAIVTGGGTGIGAGLAQGMAEAGAKVVLVGRRPDRLEEsatnINEVVGeERAFAVPADVLKYDEHPDLIQKAQDITGGTtppTILLNNAGINVRQKA-ENLTPEHWTVSLDLM----LTAPFFLARAMSDAMKQEKYGRIMNIASPQSYLAfPDSIPYAAAKSGNLGLARAMAEYFAPYhgfenVTVNNISPGYVKTELTE--------SVFADTERAGRLAQRTLIGRNSVPDDMVGTVVYLSSEASS-YVTGQTIPVDGGFTSLG 271
                  5899******************************9999999872222333333257789********************99876233479999999655544.445555556666665....556777889999******9999999987777666156667*********************85666688999999999888754........3334444445555556689999999999998888877655.57888888888876655 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.9e-09   5.1e-07       2     204 ..      19     216 ..      18     225 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.9e-09
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkel..qglektvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.....edvkvLnYapGvlDtdmqsqv 204
                  +++vtG   G+G  laq +a+     g ++vL++R  + L es  +i+  v + +   v++d+ +  +  dl++  ++ ++       +l+nnaG   +v +++++l+      +++   +  +++    l +++ ++  q     ++n++s  +  +f+    Y a+k+    + +++a         e+v v n +pG + t++++ v
  MMETSP1061-20121228|34891_1  19 VAIVTGGGTGIGAGLAQGMAE----AGAKVVLVGRRPDRLEESATNINEVVGEERAFAVPADVLKYDEHPDLIQKAQDITGG-TTPPTILLNNAGI--NVRQKAENLT-----PEHWTVSLDLMLTAPFFLARAMSDAmkQEKYGRIMNIASPQSYLAFPDSIPYAAAKSGNLGLARAMAEYFApyhgfENVTVNNISPGYVKTELTESV 216
                  79******************9....89*********************9899999999999998888888888777666554.45678899****5..5666666454.....456777777677777777777777743555668***********************988888888875433344789***************99877 PP

>> TIGR01915  npdG: NADPH-dependent F420 reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.8   2.3e-06   0.00062       3      51 ..      19      68 ..      18      77 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 2.3e-06
    TIGR01915  3 iavl.GGtGdqGkGlalRlAkageeiiiGsRdkekAeeaAkkaleeleek 51
                 +a++ GG   +G+Gla  +A ag ++++  R +++ ee+A++++e+++e+
  MMETSP1061-20121228|34891_1 19 VAIVtGGGTGIGAGLAQGMAEAGAKVVLVGRRPDRLEESATNINEVVGEE 68
                 66652444459************999988888*************99876 PP

>> TIGR02028  ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.2   3.5e-05    0.0095       2      58 ..      18      78 ..      17      83 .. 0.81
   2 ?   -2.2   0.0         1   2.8e+02     292     344 ..     172     230 ..     169     252 .. 0.47

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 3.5e-05
    TIGR02028  2 rvavvgggpa..gasaaetlakagiqtfllerkldnakpcggaiplcmvde..fdlprdii 58
                 rva+v gg +  ga  a+ +a+ag++ +l+ r++d        i   + +e  f++p d++
  MMETSP1061-20121228|34891_1 18 RVAIVTGGGTgiGAGLAQGMAEAGAKVVLVGRRPDRLEESATNINEVVGEEraFAVPADVL 78
                 899998776612567799******************9999999987776655588888876 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 1
    TIGR02028 292 faaksgrlc.aeaivees...rlgkkvieegdlkkylkr..wdkeyrptyrvldllqrv 344
                   aaksg l  a+a++e +   ++ ++v+ + +  +y+k    +  +  t r   l qr 
  MMETSP1061-20121228|34891_1 172 AAAKSGNLGlARAMAEYFapyHGFENVTVNNISPGYVKTelTESVFADTERAGRLAQRT 230
                  56666666325666654311123344444444444444311233344444444444444 PP

>> TIGR02279  PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.1   0.8   0.00039      0.11       6      49 ..      19      62 ..      14      68 .. 0.80
   2 ?    1.3   0.0     0.095        26     287     334 ..      67     116 ..      63     133 .. 0.79
   3 ?   -3.3   0.0       2.3   6.2e+02     354     384 ..     220     250 ..     201     257 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00039
    TIGR02279  6 vkvaviGaGamGaGiaqvaaraGhtvllydiraealaravagie 49
                 v ++  G   +GaG+aq  a+aG +v l   r++ l ++   i+
  MMETSP1061-20121228|34891_1 19 VAIVTGGGTGIGAGLAQGMAEAGAKVVLVGRRPDRLEESATNIN 62
                 45555555569**********************99988887776 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.095
    TIGR02279 287 eeaekavpleeasdskepavvvvgd..lgvlapllerleaagikvekksg 334
                  ee++ avp +    +++p ++ + +   g  +p    l++agi+v++k++
  MMETSP1061-20121228|34891_1  67 EERAFAVPADVLKYDEHPDLIQKAQdiTGGTTPPTILLNNAGINVRQKAE 116
                  7788888888888888887766554334788899999***********98 PP

  == domain 3    score: -3.3 bits;  conditional E-value: 2.3
    TIGR02279 354 saraaeearpnlvlldlvldystakriaiaa 384
                  + ra + a++ l+  + v d + ++++ ++ 
  MMETSP1061-20121228|34891_1 220 TERAGRLAQRTLIGRNSVPDDMVGTVVYLSS 250
                  5678888888888888888888888887775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (273 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      167  (0.0407118); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 1059.79
//
Query:       MMETSP1061-20121228|34902_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 358.26
//
Query:       MMETSP1061-20121228|34907_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-37  127.1   0.0    2.1e-25   87.5   0.0    2.2  2  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    7.4e-17   59.1   0.0    3.2e-11   40.7   0.0    2.3  2  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
    5.3e-05   20.9   0.1    0.00034   18.3   0.0    2.1  1  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.5   0.0   1.5e-28   2.1e-25      72     167 ..     254     359 ..     225     383 .. 0.83
   2 !   37.4   0.0   2.6e-13   3.6e-10     187     276 ..     402     494 ..     392     545 .. 0.74

  Alignments for each domain:
  == domain 1    score: 87.5 bits;  conditional E-value: 1.5e-28
    TIGR00005  72 p..ldilfeDedilvidKPsglvvhptggyekn..tvlnallahlkeel......vsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgef 167
                  p  l +++eD +  +++KP+g+v+    + +++  tv nal + lk  +        r+  +hRLD+ TSGllvvakt++al +L +q++e+ vkk+Y+a+v+g +
  MMETSP1061-20121228|34907_1 254 PfeLPVVYEDSHFAIVNKPAGIVCYSRRDENHGvmTVRNALPFVLKPPKrgtseiYLRPVGAHRLDKPTSGLLVVAKTKPALVNLTKQFEERVVKKTYTAIVNGIP 359
                  24489*******************99877766544999***998886667888766778888****************************************9833 PP

  == domain 2    score: 37.4 bits;  conditional E-value: 2.6e-13
    TIGR00005 187 lvavakssgkeavTvfkvler.......dekaslvelkllTGRtHQiRVHlqyl.ghplagDplYgnksvkgksleaeaklkrqaLhaselgfthpat 276
                  + + ++ + k a Tv++v+++       d+  +lvelk++TGR HQ+R H++ + + pl+gD +Y          ++     +++L ++++++ hp  
  MMETSP1061-20121228|34907_1 402 QLIDRALDDKSAITVWRVVNYteslkanDGTLTLVELKPRTGRYHQLRRHMAWVrECPLVGDVTYDGGGD-----ATALRGRGLFLCSNKIRLHHPYY 494
                  4444444589********99987777778899********************98358********88666.....345556799**********9987 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   2.4e-14   3.2e-11       2      91 ..     257     359 ..     256     368 .. 0.77
   2 !   16.1   0.0   7.7e-07    0.0011     117     203 ..     410     513 ..     392     520 .. 0.56

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 2.4e-14
    TIGR01621   2 leilfrhsdfvlinksegisvhkddget..glleevak.......qlgvekvyl....vhrldkvtsGilllalnaesaselsrlfaekkikktylalsdkkp 91 
                  l ++++ s f ++nk+ gi  +   +e+   ++   a        + g +++yl     hrldk tsG+l++a+ + +  +l+++f e+ +kkty a+ +  p
  MMETSP1061-20121228|34907_1 257 LPVVYEDSHFAIVNKPAGIVCYSRRDENhgVMTVRNALpfvlkppKRGTSEIYLrpvgAHRLDKPTSGLLVVAKTKPALVNLTKQFEERVVKKTYTAIVNGIP 359
                  679***************988654443301333332322222233568899**966666**************************************988665 PP

  == domain 2    score: 16.1 bits;  conditional E-value: 7.7e-07
    TIGR01621 117 enpaitrfesvsiae.......klrlfilkphtGkthqlrvalksl.GsailGdslygk...ae..esdrtylhafklefd..yqnev...ievvadpkqfqkwq 203
                  +  ait +  v   e        l l  lkp+tG+ hqlr  +  +   +++Gd  y++   a+  +    +l + k+++   y n v    e+ a p   qkw 
  MMETSP1061-20121228|34907_1 410 DKSAITVWRVVNYTEslkandgTLTLVELKPRTGRYHQLRRHMAWVrECPLVGDVTYDGggdATalRGRGLFLCSNKIRLHhpYYNTVegrAEWEALPDG-QKWA 513
                  55666655544433301001114568889**************9883579*******8732211101223467666665432255544222345555443.6665 PP

>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.5e-07   0.00034       1     129 [.     270     453 ..     270     457 .. 0.62

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.5e-07
    TIGR00093   1 nKPkgvls.skdDpek.rkvvkdll....ek.l...rgkklaavG..RLDrdseGlllltddgelqhrlthp..ekevektYlvqvegsvtdedleal......rkGvkledektkpaklklikepel.........................................ktklrvtlteGrnrqvrRlta 129
                  nKP g+++ s+ D+++   +v + l    ++     +   l +vG  RLD+ ++Gll++++ +     lt++  e+ v+ktY++ v+g++ + ++ ++      r Gv ++  ++            +                                          t ++++   Gr++q+rR +a
  MMETSP1061-20121228|34907_1 270 NKPAGIVCySRRDENHgVMTVRNALpfvlKPpKrgtSEIYLRPVGahRLDKPTSGLLVVAKTKPALVNLTKQfeERVVKKTYTAIVNGIPGEPAESSIttdeaiRLGVDVDVDVDVDIGDD------FggeeepnnnwqlidralddksaitvwrvvnyteslkandgtLTLVELKPRTGRYHQLRRHMA 453
                  79999998445565542344444431111332211123346788888**************99988889885336679**********998866554400000033444333333333322......233445577788888888888888888888888888777654446666667788888888766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.40
# Mc/sec: 1837.95
//
Query:       MMETSP1061-20121228|34915_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1693.10
//
Query:       MMETSP1061-20121228|34923_1  [L=249]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (249 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1314.61
//
Query:       MMETSP1061-20121228|34941_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 509.10
//
Query:       MMETSP1061-20121228|34964_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|35004_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|34993_1  [L=417]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.7   0.0          2    5.6   0.0    2.2  2  TIGR02067 his_9_proposed: histidinol-phosphate phosphatase HisN


Domain annotation for each model (and alignments):
>> TIGR02067  his_9_proposed: histidinol-phosphate phosphatase HisN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0   0.00049         2      71      93 ..     186     208 ..     179     219 .. 0.82
   2 ?    3.7   0.0    0.0019       7.6     204     222 ..     355     373 ..     349     388 .. 0.88

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.00049
    TIGR02067  71 daeyvWvlDPiDGTksFirGvPv 93 
                  + ey  v DPiDG k+  + +Pv
  MMETSP1061-20121228|34993_1 186 KGEYIAVFDPIDGSKNIDASLPV 208
                  678899*********98888887 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0019
    TIGR02067 204 pyDiaalipiieeAggvit 222
                  +y +a++++i+e+Agg  +
  MMETSP1061-20121228|34993_1 355 LYECAPMAMIMEQAGGAAS 373
                  699*************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (417 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 1775.47
//
Query:       MMETSP1061-20121228|35010_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 562.69
//
Query:       MMETSP1061-20121228|35027_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1206.76
//
Query:       MMETSP1061-20121228|35042_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 407.97
//
Query:       MMETSP1061-20121228|35050_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-07   28.9   0.0     0.0001   19.4   0.0    2.7  3  TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase
    7.6e-06   23.5   0.0    2.3e-05   21.9   0.0    1.8  1  TIGR01777 yfcH: TIGR01777 family protein
      1e-05   22.8   0.3        0.1    9.6   0.0    3.1  2  TIGR01746 Thioester-redct: thioester reductase domain
  ------ inclusion threshold ------
      0.012   12.6   0.2       0.89    6.4   0.0    2.2  2  TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase
      0.021   11.7   0.0        3.4    4.5   0.0    2.8  3  TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
      0.041   12.2   0.0       0.21    9.9   0.0    2.2  3  TIGR01753 flav_short: flavodoxin


Domain annotation for each model (and alignments):
>> TIGR01214  rmlD: dTDP-4-dehydrorhamnose reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0013      0.88       1      26 [.      67      92 ..      67     140 .. 0.85
   2 ?   -1.3   0.0      0.29     2e+02      76      99 ..     171     195 ..     163     197 .. 0.77
   3 !   19.4   0.0   1.5e-07    0.0001     124     199 ..     207     282 ..     201     322 .. 0.90

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0013
    TIGR01214  1 rilitGakgqlgreLveqlskegsev 26
                 r++i+Ga+g +g++L +ql ++g   
  MMETSP1061-20121228|35050_1 67 RVAIFGATGFVGKHLCHQLGHNGAYA 92
                 799****************9876544 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.29
    TIGR01214  76 vNalatenlAraaarvga.llvhiS 99 
                  vN+  ++++A+++ ++++  l+h+S
  MMETSP1061-20121228|35050_1 171 VNVGIAKQIAELCVEMQVdNLIHVS 195
                  7888888999999998873467887 PP

  == domain 3    score: 19.4 bits;  conditional E-value: 1.5e-07
    TIGR01214 124 YgqsKlaGEvavraasekalivRtswlygasggrnFvktmlrlakereelkvvadQig..sPTyakdlaevlaaller 199
                  ++++K +GE+avr++ + a ivR + l+g++  + F++   ++ k    + v  d  +   P +a d+a+++ ++++ 
  MMETSP1061-20121228|35050_1 207 WARTKWLGEQAVRETYPWATIVRPTQLFGSE--DKFLHYFANMSKLYGFIPVCGDGSMltQPVWAPDVAKTISRITDA 282
                  689**************************99..59******************99754338***********999876 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   3.4e-08   2.3e-05       1     117 [.      68     201 ..      68     339 .. 0.87

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 3.4e-08
    TIGR01777   1 vlitGgtGliGralveelekkghevviltrskekekeekkesakevaee..........aeeealegvdavinL......aGepiadkrwt...eerkkeileSRikttealvelikkakqkpkvlisasavgyYg 117
                  v+i+G+tG++G++l+++l ++g   +i  r +e+e+++ k   +   ++          + +e + ++d+vinL      +G+pi + ++     ++  ++ +  + ++++++el  +++  ++ li  sa g+ +
  MMETSP1061-20121228|35050_1  68 VAIFGATGFVGKHLCHQLGHNGAYAYIGNRGDEAEHRDIKPMFDLGHTRfvfyspkdvdSMREVIGDADIVINLiskthaSGQPIQTDKFPfvgWQTNYSLEDVNVGIAKQIAELCVEMQ--VDNLIHVSALGISE 201
                  689******************************9998887766655555788877766555668999999*9986665556888888776422246667778888888888888888887..66788888888755 PP

>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.1   0.00048      0.33       4      22 ..      70      88 ..      67      95 .. 0.84
   2 !    9.6   0.0   0.00015       0.1     104     197 ..     165     235 ..     159     319 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00048
    TIGR01746  4 LTGAtGfLGaylleeLlrr 22
                 + GAtGf+G++l ++L  +
  MMETSP1061-20121228|35050_1 70 IFGATGFVGKHLCHQLGHN 88
                 67*************9765 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.00015
    TIGR01746 104 pYeeLraaNVegtvevlrlaasgkakpliyvStlsvlaaielsakvevddatetkkpglatGYaqSKwvaEllvreasdrglpvtivRpGrilg 197
                  +Y +L+ +NV   +++ +l+++ +   li+vS l  +++ ++s                    a++Kw++E+ vre      + tivRp  + g
  MMETSP1061-20121228|35050_1 165 NY-SLEDVNVGIAKQIAELCVEMQVDNLIHVSALGISED-HPS------------------EWARTKWLGEQAVRET---YPWATIVRPTQLFG 235
                  45.599999999999999**9999999***999998885.222..................2566777777766654...35567777766666 PP

>> TIGR01296  asd_B: aspartate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.0    0.0072       4.9       1      19 [.      67      85 ..      67      90 .. 0.88
   2 ?    6.4   0.0    0.0013      0.89     164     239 ..     308     384 ..     305     388 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0072
    TIGR01296  1 nvaivGatGavGqellkvL 19
                 +vai GatG vG++l + L
  MMETSP1061-20121228|35050_1 67 RVAIFGATGFVGKHLCHQL 85
                 69***********998877 PP

  == domain 2    score: 6.4 bits;  conditional E-value: 0.0013
    TIGR01296 164 veeLknqtkavlegkekepeidalkakkfakqiafnaiplidklkedG...ytkeelkllfetrkilgiedlkvsatcv 239
                  v +L++q k +++  ek  +i++ ka  ++  ++fn   ++   + d     t ee +   e  kil +edl ++at +
  MMETSP1061-20121228|35050_1 308 VLDLTEQDKKIMHIPEKY-YIMMAKALGYQSFVSFNE-DMAKLWSRDIlpaMTPEEYRNQPEEGKILTMEDLGITATPI 384
                  66899*********9998.79999************6.23333344434449************************965 PP

>> TIGR01181  dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.7   0.0     0.034        23       4      86 ..      70     147 ..      67     165 .. 0.78
   2 ?    4.5   0.0     0.005       3.4      49     104 ..     163     215 ..     153     229 .. 0.79
   3 ?    1.9   0.0      0.03        20     204     268 ..     253     319 ..     216     325 .. 0.81

  Alignments for each domain:
  == domain 1    score: 1.7 bits;  conditional E-value: 0.034
    TIGR01181   4 vtGGaGfiGsnfvryileetpdaevvvlDkLtyagnkenlkdledeerysfvkgdiadrelverllkeedvdavvnfaaeshv 86 
                  + G +Gf+G  + +++ ++   +    + +    +++ ++k + d  + +fv  +  d + +++++ +   d+v+n+ + +h 
  MMETSP1061-20121228|35050_1  70 IFGATGFVGKHLCHQLGHNG-AY--AYIGNRGDEAEHRDIKPMFDLGHTRFVFYSPKDVDSMREVIGDA--DIVINLISKTHA 147
                  67889999998887765544.33..45556666777888999999999999999999********9955..59****999996 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.005
    TIGR01181  49 eerysfvkgdiadrelverllkeedvdavvnfaaeshvDrsisepeafietnvvGt 104
                  +++ys++ ++++ ++++++l+ e++vd +++++a      s ++p+++ +t  +G 
  MMETSP1061-20121228|35050_1 163 QTNYSLEDVNVGIAKQIAELCVEMQVDNLIHVSAL---GISEDHPSEWARTKWLGE 215
                  57899**************************9884...345555666666655555 PP

  == domain 3    score: 1.9 bits;  conditional E-value: 0.03
    TIGR01181 204 klpvyGdGqqvrDwlyveDhcraielvlekgr..vgevyniggeeertnlevvkiilelldkdedli 268
                   +pv GdG+ +   +++ D +++i+ + +  +  +g++ +  g ++ t  e+ k +l+l ++d++ +
  MMETSP1061-20121228|35050_1 253 FIPVCGDGSMLTQPVWAPDVAKTISRITDAPEkfEGRTVDCFGPSDYTYEELGKFVLDLTEQDKKIM 319
                  589************************9977622578888899999999999999999988776655 PP

>> TIGR01753  flav_short: flavodoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0       4.3     3e+03      80      97 ..      65      83 ..      61      85 .. 0.75
   2 ?   -2.4   0.0         2   1.4e+03      82      97 ..     230     246 ..     228     250 .. 0.75
   3 ?    9.9   0.0    0.0003      0.21      77     107 ..     285     316 ..     277     329 .. 0.90

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 4.3
    TIGR01753 80 gkkvalfGsgdtay.efce 97
                 +  va+fG+ +  + + c+
  MMETSP1061-20121228|35050_1 65 DLRVAIFGATGFVGkHLCH 83
                 456999*999988877775 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 2
    TIGR01753  82 kvalfGsgdtay.efce 97 
                   + lfGs d +  +f +
  MMETSP1061-20121228|35050_1 230 PTQLFGSEDKFLhYFAN 246
                  5679***9999967765 PP

  == domain 3    score: 9.9 bits;  conditional E-value: 0.0003
    TIGR01753  77 dlegkkvalfGsgdtay.efceavdkleerlk 107
                  ++eg++v +fG+ d++y e +++v +l e+ k
  MMETSP1061-20121228|35050_1 285 KFEGRTVDCFGPSDYTYeELGKFVLDLTEQDK 316
                  6899*********************9999866 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1923.27
//
Query:       MMETSP1061-20121228|35069_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 521.96
//
Query:       MMETSP1061-20121228|35089_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-23   81.1   0.4    1.5e-23   81.0   0.3    1.0  1  TIGR04130 FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase


Domain annotation for each model (and alignments):
>> TIGR04130  FnlA: UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.0   0.3   3.7e-27   1.5e-23     260     322 ..       2      64 ..       1      65 [] 0.97

  Alignments for each domain:
  == domain 1    score: 81.0 bits;  conditional E-value: 3.7e-27
    TIGR04130 260 lyeallsreemiaaedmgdyyrvppdlrdlnygkyveqgdsrisevedynshnterldvegmk 322
                  l+eal sreem+ a++ gdyyr+p d rdlny ky+++g + +s+vedynshnt+rl+   m+
  MMETSP1061-20121228|35089_1   2 LFEALCSREEMLIARNEGDYYRIPADNRDLNYEKYFNEGSKELSAVEDYNSHNTHRLNTGEMR 64 
                  8*********************************************************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 357.47
//
Query:       MMETSP1061-20121228|35093_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1061-20121228|35131_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 232.55
//
Query:       MMETSP1061-20121228|35143_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1061-20121228|35149_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 215.98
//
Query:       MMETSP1061-20121228|35151_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.27
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|35172_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 455.36
//
Query:       MMETSP1061-20121228|35168_1  [L=525]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-147  489.6   1.7   2.1e-147  489.3   1.2    1.1  1  TIGR01064 pyruv_kin: pyruvate kinase
  ------ inclusion threshold ------
      0.016   12.6   0.0      0.026   11.9   0.0    1.3  1  TIGR03239 GarL: 2-dehydro-3-deoxyglucarate aldolase


Domain annotation for each model (and alignments):
>> TIGR01064  pyruv_kin: pyruvate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  489.3   1.2    1e-150  2.1e-147       3     473 ..       2     519 ..       1     522 [. 0.87

  Alignments for each domain:
  == domain 1    score: 489.3 bits;  conditional E-value: 1e-150
    TIGR01064   3 tkIvaTiGPateskevlkklldaGvnvvRlNfSHgsheeh..kkvienvrevaeklg.............kpvaillDtkGpeiRvgeikk..eevklkkgekvilttdekkee.....g.seekvsvdykslvkdvkeGdkilvdDGkislkVveveedk..vivevknggelkskkgvnlpgaevslpalsekDkkdlkfgveqgvdlvaaSFvrkaedvkevrevlee........kgakdvk..iiaKiEnqegvknideIikasdgimvARGDLGveipaeevpllQkklikkcreagkpvitATqmLdSmiknprPTRAEvsDvanAvldGtdavMLSgEtakGkYPveaVkvmakiakeaekalekktelker...knskakkssieeavalaaveaaekakakaivvltesgrtarllskyrpkapiiavtrnervarqlalsrGvfpvlvd.......eeeeelekalkkalellkekgilkkgdlvvviqa..gavlekeketntikv 473
                  tkIv+TiGP+t+++e++++ll +G+ v+RlNfSH+  +++  ++  +++re++ + +             +  ail+DtkGpeiR+g + +  e   ++ + kvilt ++ + e     g ++  +++dy+s++k+v++G+ +l+dDG+i+l+V e++ +   +++++ ngg++k++kgvnlpg+e++lpal+ekDk+dlk ++e g d++aaSF+r+ ++v++v  +l++        +g  +v+  +i+KiEn+egv+n+deI+k sdgimvARGDLGveip+  v+++Qk++++kc+e+gkpvi+ATqmLdSmi+nprPTRAEv+Dv  AvldGtd vMLSgEta+G+YP+eaVk ma+i  ea+++l+k+ +++ +   ++s + +++  + va++ v+aa  ++++ i++++++g+ a+++++ +p++p++a+ ++++var+l+l+r ++p++++        + +++   +++a+e++ e+g+++kgd v+v+ +  g+  +  +  n++kv
  MMETSP1061-20121228|35168_1   2 TKIVCTIGPSTDTPEKMSELLRNGMHVARLNFSHAGADYTypETLFKMLREAKGNHEsmavetssgampnNLRAILVDTKGPEIRTGLLPGdkEVSYIEVDAKVILTIEDVSGEpvpedGdTDRILNIDYQSICKTVSVGKMVLLDDGLIALEVMEIDPNGkyIVCKALNGGPIKKNKGVNLPGMELDLPALTEKDKRDLKWACEMGADYIAASFIRTGANVRSVIAYLNRciasmpeyHGFTRVRplVISKIENKEGVDNFDEILKESDGIMVARGDLGVEIPYSTVFAAQKMMVSKCNEVGKPVIVATQMLDSMIRNPRPTRAEVTDVGTAVLDGTDTVMLSGETAAGAYPIEAVKSMASILVEADHILTKEGKMSWNqalHESLTPPEQEMDGVAASCVKAASVMNVSKIIMVSREGKFAKAVARHKPHVPVLAFCTDPQVARRLQLHRAITPIMLHttlpgteRQITSTGLLRQEAIETAVEMGFVEKGDRVIVVDQtlGKSSHLYEVANNMKV 519
                  9*********************************877654338999****998766666688888888855569***************9873445799********98764331111131445679******************************988778*************************************************************9999976332222224445554559*************************************************************************************************************************99665554331135556677888899*************************************************************9998999876555666778899****************99987611233344445556655 PP

>> TIGR03239  GarL: 2-dehydro-3-deoxyglucarate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.3e-05     0.026     125     178 ..     234     285 ..     211     315 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.3e-05
    TIGR03239 125 ygtvadyfkkindnitvlvqiesrkgvdavdeiaavdgvdgvfvgpsdlaaalg 178
                   +++++y         v+ +ie ++gvd+ dei  +   dg++v  +dl   + 
  MMETSP1061-20121228|35168_1 234 IASMPEYHGFTRVRPLVISKIENKEGVDNFDEILKE--SDGIMVARGDLGVEIP 285
                  5677777777777778999**************865..69******99987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (525 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2309.81
//
Query:       MMETSP1061-20121228|35191_1  [L=408]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (408 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 2341.37
//
Query:       MMETSP1061-20121228|35205_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   15.9   0.5      0.018   11.8   0.1    2.2  2  TIGR02906 spore_CotS: spore coat protein, CotS family


Domain annotation for each model (and alignments):
>> TIGR02906  spore_CotS: spore coat protein, CotS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    1.9   0.0    0.0045        19      70     108 ..     111     149 ..     107     163 .. 0.86
   2 !   11.8   0.1   4.4e-06     0.018     183     232 ..     202     253 ..     194     274 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.0045
    TIGR02906  70 klyvltewiegrecefknpedlkkaakalaelHkaSkgy 108
                  ++ +l+e +  + +++ n + +++a++ +a+lH+   g+
  MMETSP1061-20121228|35205_1 111 SITILMEPLPNHTLHYMNGKIAEAAVRSVAKLHAYFWGI 149
                  678999***************************876665 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 4.4e-06
    TIGR02906 183 eekkkrglcHqDyayhNillkd..nevyviDlDsvtiDlrvrDlrkliiklm 232
                  +e++ + +cH D+ ++N+ ++     v ++D+ ++    ++ Dl++l    m
  MMETSP1061-20121228|35205_1 202 KEHEYQTICHGDLKACNMSMSRdpSYVTFVDFQYLGKACPAKDLAYLFVCGM 253
                  56677889**********999845667789***************9987666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.21
# Mc/sec: 2111.83
//
Query:       MMETSP1061-20121228|35213_1  [L=542]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (542 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 2861.52
//
Query:       MMETSP1061-20121228|35222_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 893.93
//
Query:       MMETSP1061-20121228|35231_1  [L=354]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (354 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1730.52
//
Query:       MMETSP1061-20121228|35251_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|35247_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   13.9   0.0       0.53    6.9   0.0    2.2  2  TIGR03471 HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ


Domain annotation for each model (and alignments):
>> TIGR03471  HpnJ: hopanoid biosynthesis associated radical SAM protein HpnJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.9   0.0   0.00013      0.53     313     400 ..     248     331 ..     241     354 .. 0.75
   2 !    4.6   0.0   0.00064       2.6     288     344 ..     360     416 ..     351     437 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.00013
    TIGR03471 313 lknikkGlkvevarkftkdckklGlkvhGtfilGlPgetretirktiefakeldpet.iqvslaapyPGtelydqakenGwleeekaal 400
                  l+ +k G +vev     + c+++ l v G  ilGl  + +e +++  + a ++ +++ ++v    ++PG +l    ++  +l ++ +++
  MMETSP1061-20121228|35247_1 248 LDTVKDGGTVEV----EEACQHFSLDVAGRQILGLDLKGKEEMERF-RRAVDVYVNSlLKVEAYLTFPGNTLLPSFRARRYLVSKIKEK 331
                  566666666665....578**********************99874.5566666665268999999***99999999988887654433 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.00064
    TIGR03471 288 etlkvlkenGlrlllvGyesGdqqilkni.kkGlkvevarkftkdckklGlkvhGtfi 344
                   tl+ + en l ll+ G e+  + + + +   Gl+ ev +k++++ +kl ++vhG+ i
  MMETSP1061-20121228|35247_1 360 LTLEEIVENSLILLIAGTETSASTLATAMfLLGLHPEVFEKLVQEQHKL-VSVHGETI 416
                  599*****************999988776268****************9.89***977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.17s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 2243.81
//
Query:       MMETSP1061-20121228|35263_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.33
# Mc/sec: 931.92
//
Query:       MMETSP1061-20121228|35285_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 486.28
//
Query:       MMETSP1061-20121228|35287_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.23    8.1   3.1       0.26    8.0   2.2    1.0  1  TIGR00206 fliF: flagellar M-ring protein FliF
       0.77    8.0   7.4       0.92    7.7   5.1    1.1  1  TIGR03685 L21P_arch: 50S ribosomal protein L12P


Domain annotation for each model (and alignments):
>> TIGR00206  fliF: flagellar M-ring protein FliF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.2   0.00013      0.26     304     348 ..      12      55 ..       9      65 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00013
    TIGR00206 304 leeekqGagykqgGvpGaesninaevqdlkdntenkeeekeeksv 348
                  ++++k+ +g++    +G e + n + ++++d+++++e+e+e k+ 
  MMETSP1061-20121228|35287_1  12 NQKNKESSGKAAAAAAGSETE-NKPQEKVPDKKQETEQEQEAKNG 55 
                  567777788888899999999.66999****************94 PP

>> TIGR03685  L21P_arch: 50S ribosomal protein L12P
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   5.1   0.00045      0.92      61      91 ..      22      52 ..      12      58 .. 0.41

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00045
    TIGR03685 61 pvaaaaaaaaaaeaaeeekeeeeeeeeekee 91
                 ++aaaa++ ++++++e+  ++++e e+e+e 
  MMETSP1061-20121228|35287_1 22 AAAAAAGSETENKPQEKVPDKKQETEQEQEA 52
                 2233333333333333333333333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 442.16
//
Query:       MMETSP1061-20121228|35317_1  [L=943]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.17s 00:00:00.57 Elapsed: 00:00:00.37
# Mc/sec: 3363.94
//
Query:       MMETSP1061-20121228|35315_1  [L=700]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (700 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 3299.73
//
Query:       MMETSP1061-20121228|35391_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 311.97
//
Query:       MMETSP1061-20121228|35397_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-19   68.6   0.0    1.4e-19   68.5   0.0    1.0  1  TIGR01084 mutY: A/G-specific adenine glycosylase
    7.4e-06   23.6   0.0    8.4e-06   23.4   0.0    1.0  1  TIGR01083 nth: endonuclease III
    0.00026   18.0   0.0    0.00027   18.0   0.0    1.0  1  TIGR00588 ogg: 8-oxoguanine DNA-glycosylase (ogg)
  ------ inclusion threshold ------
      0.018   11.1   0.0      0.018   11.1   0.0    1.0  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase


Domain annotation for each model (and alignments):
>> TIGR01084  mutY: A/G-specific adenine glycosylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.5   0.0   1.4e-22   1.4e-19      57     118 ..       2      63 .]       1      63 [] 0.99

  Alignments for each domain:
  == domain 1    score: 68.5 bits;  conditional E-value: 1.4e-22
    TIGR01084  57 fPtveaLanaeedevlklWeGlGYYaRaRnLkkaakevkeefggelPkdledlkalkGvGry 118
                  fPtv +La+a+ed+v   W+GlG+Y RaR L+++ak v+ee +g+lP++ ++l++++G+G+y
  MMETSP1061-20121228|35397_1   2 FPTVYELAAATEDKVNAHWAGLGFYRRARYLHQGAKYVVEELDGKLPTTPRELSKITGIGPY 63 
                  ************************************************************98 PP

>> TIGR01083  nth: endonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   8.2e-09   8.4e-06      57     116 ..       3      61 ..       1      62 [. 0.95

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 8.2e-09
    TIGR01083  57 ktpqdlaeakleeleeliksiglyrnKakniielsrklvekykgevPedleelvkLpGvg 116
                  +t+ +la+a++++++      g+yr +a+ + + ++ +ve+ +g++P++  el k+ G+g
  MMETSP1061-20121228|35397_1   3 PTVYELAAATEDKVNAHWAGLGFYR-RARYLHQGAKYVVEELDGKLPTTPRELSKITGIG 61 
                  68889*******************8.69******************************98 PP

>> TIGR00588  ogg: 8-oxoguanine DNA-glycosylase (ogg)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.6e-07   0.00027     163     204 ..       2      46 ..       1      59 [. 0.86

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.6e-07
    TIGR00588 163 fPsleaLag...reaeakLrklGlGyraryvretaralleekgea 204
                  fP+  +La+    +++a+   lG+  rary+ + a+ ++ee +++
  MMETSP1061-20121228|35397_1   2 FPTVYELAAateDKVNAHWAGLGFYRRARYLHQGAKYVVEELDGK 46 
                  99999998866578888999999999***************9986 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   1.8e-05     0.018     507     527 ..      25      45 ..      10      50 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.8e-05
    TIGR03817 507 vhpGavylhqGesyvvdeldl 527
                   +  a ylhqG +yvv+eld 
  MMETSP1061-20121228|35397_1  25 FYRRARYLHQGAKYVVEELDG 45 
                  567799*************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 377.97
//
Query:       MMETSP1061-20121228|35400_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.14s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|35392_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.40
# Mc/sec: 904.13
//
Query:       MMETSP1061-20121228|35406_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   11.6   0.7      0.031   10.9   0.3    1.4  1  TIGR04018 Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family


Domain annotation for each model (and alignments):
>> TIGR04018  Bthiol_YpdA: putative bacillithiol system oxidoreductase, YpdA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.3   7.5e-06     0.031      57     138 ..      64     150 ..      59     179 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.5e-06
    TIGR04018  57 eiPfisenekptrkealeYYrrvaekkklniklyeevek.....vkkkeekfevktekeeyeakkvvvatGyydipnllnvpGedlp 138
                  e Pf++e+  + rk+a  Y  +v+++ k + ++y++ +k     +++++++++ k ++++ +a k ++    +++ +++++ G  l+
  MMETSP1061-20121228|35406_1  64 EQPFVTEEVEALRKQAGLYHEKVVHRAKASQQAYQKGDKkkahtLSEEKKSWQRKRDEANKKAAKFILEPQQWQKFTTIDLHGLHLE 150
                  68********************************97655111114455577888888889999999998888888888888886665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       271  (0.0660653); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.33
# Mc/sec: 899.93
//
Query:       MMETSP1061-20121228|35415_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 418.92
//
Query:       MMETSP1061-20121228|35440_1  [L=435]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-30  103.5   1.3      3e-30  103.5   0.9    1.7  2  TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family


Domain annotation for each model (and alignments):
>> TIGR03592  yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   0.9   7.4e-34     3e-30       5     190 ..     169     361 ..     165     362 .. 0.87
   2 ?   -2.9   0.4       0.3   1.2e+03      34      62 ..     387     415 ..     381     420 .. 0.74

  Alignments for each domain:
  == domain 1    score: 103.5 bits;  conditional E-value: 7.4e-34
    TIGR03592   5 aIilltlvirllllplsakqiksmrkmqelqpklkeiqekyk.......edrqklqqemmklykeegvnplaGcLPlLiQmPillaLyavllrsiel.....rkapflwiedlsspdptveatiallaiyilpvlaglttflqqklsapkp..adpa....qqkimlyimpvmflfmflffpaglllYwvvsnlftilqqliin 190
                  +I+++t  ir+++lpl+++  +++ +m +lqp+l+ ++++y+        ++q+ +++m++l+k+++v p++ +   LiQ P++++++  + + ++l      +    w++dl+ +dp          +yilp+  g++++++ +  + ++  ++p+      ++    m v+++ +  +fpa++l Ywv +n++t++q ++++
  MMETSP1061-20121228|35440_1 169 SIFAVTCAIRAVILPLAIRGQRASSRMAHLQPELAMLKKRYEalgtpsqAEQQAFAKNMQALFKRYEVTPFSALATPLIQAPMFIGMFFGMRKLPDLfpeacANGGLWWFTDLTVADP----------TYILPIACGISFVATIESGKDQMidSNPQhgpvIVNA-FRAMAVVMIPVITTFPAAMLCYWVPNNFITMVQSITLR 361
                  8********************************************99998999**************************************777776443334677779*********..........99************99998555533444466643333.3467888888899********************99876 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 0.3
    TIGR03592  34 lqpklkeiqekykedrqklqqemmklyke 62 
                  +q+ ++++ ++ k ++++ ++++ +  ke
  MMETSP1061-20121228|35440_1 387 FQETMEKLVKQVKGEPTTEKEKIERHNKE 415
                  68888888888888887777777666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (435 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 2050.54
//
Query:       MMETSP1061-20121228|35449_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 588.45
//
Query:       MMETSP1061-20121228|35452_1  [L=251]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-13   46.3   0.1    1.6e-12   45.3   0.0    1.6  2  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ


Domain annotation for each model (and alignments):
>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.0      0.27   1.1e+03       6      25 ..      86     105 ..      84     134 .. 0.68
   2 !   45.3   0.0   3.9e-16   1.6e-12      43     139 ..     145     247 ..     123     249 .. 0.88

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.27
    TIGR03042   6 sllLvlvltlLvscsgpaaa 25 
                  s +Lvlv++ + + s+  a+
  MMETSP1061-20121228|35452_1  86 SHILVLVAATITAPSSAYAK 105
                  56777777777776655544 PP

  == domain 2    score: 45.3 bits;  conditional E-value: 3.9e-16
    TIGR03042  43 eeieaakdrldeLkslvakkdWvetrnlihGPlgevrremtylnqsLl......pkdkkeakklakelkedLeklDeAAklqdkseaqkayqevaadldayld 139
                  +++++  +rl e++ l ++k W ++  +i GPlg ++++m+ + +  l      pk  k+++++ k++k d+  + +AA+ +d++e  k+ +++ +dl+a+l+
  MMETSP1061-20121228|35452_1 145 RRLAESESRLGEIRGLAEQKKWSQINGIITGPLGTLSSTMSQIVSIVLtspttsPKKIKQVQEIVKKVKADIISIGQAASRKDTEECTKQSANASNDLKALLE 247
                  56677899*********************************99765442322237888999**************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (251 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       279  (0.0680156); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 1068.69
//
Query:       MMETSP1061-20121228|35464_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 571.95
//
Query:       MMETSP1061-20121228|35479_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2523.02
//
Query:       MMETSP1061-20121228|35495_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-43  142.4   0.0      3e-24   82.9   0.0    2.2  2  TIGR02180 GRX_euk: glutaredoxin
    3.7e-25   85.6   0.0    1.4e-13   48.5   0.0    2.1  2  TIGR02189 GlrX-like_plant: glutaredoxin-like family
      9e-25   84.6   0.2    4.1e-13   47.2   0.0    2.7  3  TIGR02181 GRX_bact: glutaredoxin 3
    5.8e-18   62.5   0.0    7.6e-11   39.7   0.0    2.6  2  TIGR02190 GlrX-dom: glutaredoxin-family domain
    1.1e-12   45.7   0.0    4.4e-06   24.6   0.0    2.2  2  TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family
    3.6e-12   44.5   0.0    6.3e-05   21.3   0.0    2.7  2  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family
    3.2e-08   31.7   0.0    0.00025   19.3   0.0    2.4  2  TIGR02200 GlrX_actino: glutaredoxin-like protein
     0.0023   15.9   0.0      0.069   11.2   0.0    2.5  2  TIGR02183 GRXA: glutaredoxin, GrxA family
     0.0028   15.1   0.1       0.23    8.9   0.0    2.4  2  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
  ------ inclusion threshold ------
       0.61    6.2   7.5       0.86    5.7   5.2    1.2  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.9   0.0   7.4e-27     3e-24       6      83 ..       2      80 ..       1      81 [. 0.96
   2 !   57.6   0.0   5.8e-19   2.4e-16       2      83 ..     171     254 ..     170     255 .. 0.93

  Alignments for each domain:
  == domain 1    score: 82.9 bits;  conditional E-value: 7.4e-27
    TIGR02180  6 KsyCpYckkakelLkklkvkka.levveldklengselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkleel 83
                 K++CpYc+ka e+L+   v+++ + v++l++++++s++q+ L+ ltg+rtVP++f++gk+iGG d++++ +++g+l  +
  MMETSP1061-20121228|35495_1  2 KPWCPYCRKALEALARAGVSQDqMFVIDLSQHSDTSRIQSTLQGLTGRRTVPNVFVGGKSIGGGDETHRFQQRGQLVPM 80
                 99*************99999988****************************************************9876 PP

  == domain 2    score: 57.6 bits;  conditional E-value: 5.8e-19
    TIGR02180   2 vvfsKsyCpYckkakelLkklkvkka.levveldkl.engselqdyLkeltgqrtVPrifingkfiGGsddlkklekkgkleel 83 
                  ++fs s+Cp ck + e+L+   v+++ +++v+ld++ + ++ +++ +k ltg+ +VP++f++g+ +GG+   ++l+++gkl  l
  MMETSP1061-20121228|35495_1 171 LMFSLSWCPECKGLLEFLETIGVDTSrIHIVDLDDYhSLEKTIRANMKALTGRPSVPNLFVGGEYVGGYRRSHELHEEGKLVPL 254
                  68*****************999**999*******98345689**************************************9865 PP

>> TIGR02189  GlrX-like_plant: glutaredoxin-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   4.8e-12     2e-09      36      97 ..      26      87 ..       2      89 .. 0.86
   2 !   48.5   0.0   3.4e-16   1.4e-13       2      97 ..     162     261 ..     161     262 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.2 bits;  conditional E-value: 4.8e-12
    TIGR02189 36 avveldkeaeakeiekallelgskeavPvvfvGGklvGgleevmalhlsgsLvpllkkagal 97
                  v++l ++++++ i++ l+ l+++ +vP vfvGGk +Gg +e   +   g+Lvp+l +agal
  MMETSP1061-20121228|35495_1 26 FVIDLSQHSDTSRIQSTLQGLTGRRTVPNVFVGGKSIGGGDETHRFQQRGQLVPMLADAGAL 87
                 5899999****************************************************997 PP

  == domain 2    score: 48.5 bits;  conditional E-value: 3.4e-16
    TIGR02189   2 rrlvsekavvifskssCClshvvkrLllelGvnPa...vveldkeaeakeiekalle.lgskeavPvvfvGGklvGgleevmalhlsgsLvpllkkagal 97 
                  r l+ e+++++fs s C  +  + + l ++Gv+ +   +v+ld+ ++ ++  +a ++ l+++++vP +fvGG++vGg  +   lh +g+Lvpll++agal
  MMETSP1061-20121228|35495_1 162 RSLMDENPMLMFSLSWCPECKGLLEFLETIGVDTSrihIVDLDDYHSLEKTIRANMKaLTGRPSVPNLFVGGEYVGGYRRSHELHEEGKLVPLLERAGAL 261
                  67899***************************975333777888777777767777769***************************************97 PP

>> TIGR02181  GRX_bact: glutaredoxin 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0     1e-15   4.1e-13       6      80 .]       2      81 ..       1      81 [. 0.79
   2 ?   -2.1   0.2       2.5     1e+03      19      45 ..      92     118 ..      88     125 .. 0.64
   3 !   34.5   0.0   9.3e-12   3.8e-09       3      80 .]     172     255 ..     170     255 .. 0.83

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 1e-15
    TIGR02181  6 kksCpycsrAkalLeekgvefeei.evdkdk....eareemierskgrrtvPQifigdvhvGGcddLlaleregkLdkLL 80
                 k+ Cpyc++A + L++ gv+ +++  +d ++    ++ +  ++   grrtvP +f+g +++GG d+ ++ +++g+L ++L
  MMETSP1061-20121228|35495_1  2 KPWCPYCRKALEALARAGVSQDQMfVIDLSQhsdtSRIQSTLQGLTGRRTVPNVFVGGKSIGGGDETHRFQQRGQLVPML 81
                 578****************7666414554442222445555555569*****************************9987 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 2.5
    TIGR02181  19 Leekgvefeeievdkdkeareemiers 45 
                  Le+++ + +e + +++++ r+e  ++ 
  MMETSP1061-20121228|35495_1  92 LERRDTQATERKTQTKETPRKETSQQR 118
                  677777777777777777776655443 PP

  == domain 3    score: 34.5 bits;  conditional E-value: 9.3e-12
    TIGR02181   3 iYtkksCpycsrAkalLeekgvefeeiev.dkdk......eareemierskgrrtvPQifigdvhvGGcddLlaleregkLdkLL 80 
                  +++ + Cp c+   ++Le+ gv+ + i++ d d+      + r++m + + gr +vP +f+g + vGG+   ++l++egkL +LL
  MMETSP1061-20121228|35495_1 172 MFSLSWCPECKGLLEFLETIGVDTSRIHIvDLDDyhslekTIRANMKALT-GRPSVPNLFVGGEYVGGYRRSHELHEEGKLVPLL 255
                  889999****************8888775344433333326677888888.7*****************************9998 PP

>> TIGR02190  GlrX-dom: glutaredoxin-family domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.0   1.9e-13   7.6e-11      15      75 ..       2      69 ..       1      72 [. 0.78
   2 !   20.2   0.0   2.2e-07   9.2e-05      11      71 ..     171     239 ..     163     247 .. 0.73

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.9e-13
    TIGR02190 15 kpGCPfCakakavLkekGldfee...ivLgkdirtr....slravtGattvPqvfinGkliGgsdele 75
                 kp CP+C ka ++L+  G+       i L ++  t     +l+ +tG+ tvP vf++Gk iGg de +
  MMETSP1061-20121228|35495_1  2 KPWCPYCRKALEALARAGVSQDQmfvIDLSQHSDTSriqsTLQGLTGRRTVPNVFVGGKSIGGGDETH 69
                 899***************976542215676665553122267899********************965 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 2.2e-07
    TIGR02190  11 svftkpGCPfCakakavLkekGldfeeiv.........LgkdirtrslravtGattvPqvfinGkliGgs 71 
                   +f+   CP C    + L+  G+d   i          L+k ir+  ++a+tG+ +vP  f++G+++Gg 
  MMETSP1061-20121228|35495_1 171 LMFSLSWCPECKGLLEFLETIGVDTSRIHivdlddyhsLEKTIRA-NMKALTGRPSVPNLFVGGEYVGGY 239
                  567778899999999999999998877642232222224555554.589*******************96 PP

>> TIGR00365  TIGR00365: monothiol glutaredoxin, Grx4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   5.2e-07   0.00021      25      97 ..       3      81 ..       1      83 [. 0.83
   2 !   24.6   0.0   1.1e-08   4.4e-06      36      98 ..     187     256 ..     158     257 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 5.2e-07
    TIGR00365 25 pqCGfsakavqilkalgv...efatvnvled...eeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkll 97
                 p C +  ka ++l ++gv   ++  +++ ++   ++i+++l+  +   t+P ++v g+ +GG d  + + ++g+l  +l
  MMETSP1061-20121228|35495_1  3 PWCPYCRKALEALARAGVsqdQMFVIDLSQHsdtSRIQSTLQGLTGRRTVPNVFVGGKSIGGGDETHRFQQRGQLVPML 81
                 89*************999444455566655411246999***********************************98877 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 1.1e-08
    TIGR00365  36 ilkalgvefatvnvle.......deeireelkeysnWPtiPqlyvkgelvGGcdivlelyesgelkkllk 98 
                   l+++gv+ + + +++       +++ir+++k  +  P +P l+v ge+vGG    +el+e+g+l  ll+
  MMETSP1061-20121228|35495_1 187 FLETIGVDTSRIHIVDlddyhslEKTIRANMKALTGRPSVPNLFVGGEYVGGYRRSHELHEEGKLVPLLE 256
                  55555555444444322222222578**************************************998876 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.0   1.5e-07   6.3e-05       7      63 ..       2      64 ..       1      73 [. 0.72
   2 !   20.4   0.0   2.9e-07   0.00012       4      66 ..     172     241 ..     169     245 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 1.5e-07
    TIGR02196  7 tpwCppCkkakeyLkskgiafeeidv...ek..dsaaae.ellkklgqrsvPvivigekivvG 63
                 +pwCp+C+ka e+L ++g++ +++ v    +  d    +  l   +g+r vP + +g+k + G
  MMETSP1061-20121228|35495_1  2 KPWCPYCRKALEALARAGVSQDQMFVidlSQhsDTSRIQsTLQGLTGRRTVPNVFVGGKSIGG 64
                 69******************998766221331133333314455678**********886655 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 2.9e-07
    TIGR02196   4 vYttpwCppCkkakeyLkskgiafeeidvek.......dsaaaeellkklgqrsvPvivigekivvGFdk 66 
                  +++  wCp+Ck + e+L++ g++ + i + +       +++ ++++   +g+ svP + +g++ v G+++
  MMETSP1061-20121228|35495_1 172 MFSLSWCPECKGLLEFLETIGVDTSRIHIVDlddyhslEKTIRANMKALTGRPSVPNLFVGGEYVGGYRR 241
                  7899********************999985332222224566777888899**********99999*986 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     6e-07   0.00025       7      58 ..       2      58 ..       1      63 [. 0.75
   2 !   10.2   0.0   0.00042      0.17       4      32 ..     172     200 ..     169     215 .. 0.84

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 6e-07
    TIGR02200  7 tswCgyCaslkrtLdkdgaeYe...vvdiekdeeaadyvksvnd..GnktvPtVkfa 58
                 ++wC+yC+++ + L + g++ +   v+d+ +  +++   +++++  G +tvP V + 
  MMETSP1061-20121228|35495_1  2 KPWCPYCRKALEALARAGVSQDqmfVIDLSQHSDTSRIQSTLQGltGRRTVPNVFVG 58
                 68*****************98733357887777776666655534489999999664 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00042
    TIGR02200   4 vYatswCgyCaslkrtLdkdgaeYevvdi 32 
                  ++  swC++C+ l + L+  g++   + i
  MMETSP1061-20121228|35495_1 172 MFSLSWCPECKGLLEFLETIGVDTSRIHI 200
                  78899************999988666555 PP

>> TIGR02183  GRXA: glutaredoxin, GrxA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0   0.00017     0.069       8      77 ..       3      71 ..       1      78 [. 0.62
   2 ?    2.0   0.0      0.13        51      46      72 ..     216     240 ..     172     252 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00017
    TIGR02183  8 pgcpycvrakqlaeklakeladfefryvdihaeGiskadlektvG.kpvetvpqifvdekavGGctdfeal 77
                 p cpyc +a +   +    +++     +d+     + +  +   G     tvp++fv  k++GG  + +++
  MMETSP1061-20121228|35495_1  3 PWCPYCRKALEALARAGVSQDQ--MFVIDLSQHSDTSRIQSTLQGlTGRRTVPNVFVGGKSIGGGDETHRF 71
                 6799999987644443333332..23577766555444333333313357**************9876655 PP

  == domain 2    score: 2.0 bits;  conditional E-value: 0.13
    TIGR02183  46 dlektvGkpvetvpqifvdekavGGct 72 
                  +++   G+p  +vp++fv  + vGG  
  MMETSP1061-20121228|35495_1 216 NMKALTGRP--SVPNLFVGGEYVGGYR 240
                  555555555..69***********965 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0     0.019       7.9      74      93 ..       4      20 ..       2      43 .. 0.66
   2 !    8.9   0.0   0.00057      0.23      67     103 ..     170     206 ..     133     222 .. 0.78

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.019
    TIGR00385 74 WCptCraehplLkelakegl 93
                 WCp+Cr+  + L    + g+
  MMETSP1061-20121228|35495_1  4 WCPYCRKALEALA---RAGV 20
                 ******8655554...4443 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 0.00057
    TIGR00385  67 LlnvwasWCptCraehplLkelakeglrivgvdykDe 103
                  +l +  sWCp C+   ++L+ +  +  ri  vd+ D 
  MMETSP1061-20121228|35495_1 170 MLMFSLSWCPECKGLLEFLETIGVDTSRIHIVDLDDY 206
                  4456679***************999977777777664 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   5.2    0.0021      0.86     322     379 ..      93     148 ..      68     167 .. 0.45

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0021
    TIGR02442 322 eekkleekkeeakpdeekedeseekekeeskkqe.eeepgkddekeedekeeaeeeaes 379
                  e+++ + +++ +++++e++ ++  ++++++++ e  e+p++dd+++   +e+ e +++s
  MMETSP1061-20121228|35495_1  93 ERRDTQATER-KTQTKETPRKE-TSQQRQKQQ-EiVESPDNDDDDDASDEESDEWKSSS 148
                  2222222222.22222222222.222222233.33555555544444433333333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1109.53
//
Query:       MMETSP1061-20121228|35510_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 302.48
//
Query:       MMETSP1061-20121228|35499_1  [L=418]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   11.2   0.2      0.036   10.8   0.1    1.2  1  TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family


Domain annotation for each model (and alignments):
>> TIGR04022  sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.1   8.8e-06     0.036     276     345 ..      90     161 ..      35     172 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 8.8e-06
    TIGR04022 276 iaevgelairleaaeallerageavdaaaaepteesvaaasiavae..akvltteialeaaskLfelaGtrs 345
                  i + ++la + ea +   e+  ++v++a++++ + +v  + ++ a+  ak lt++ alea +kL++l   +s
  MMETSP1061-20121228|35499_1  90 IWSATDLASQKEANQKTAEELEQKVEEAKESAGDMEVMDSRVELARfaAKSLTEDEALEAYKKLLDLPKMSS 161
                  5566788889999999999999*******************99996559*****************976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (418 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       272  (0.0663091); expected 82.0 (0.02)
Passed bias filter:                      178  (0.0433935); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 1839.05
//
Query:       MMETSP1061-20121228|35515_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 402.91
//
Query:       MMETSP1061-20121228|35521_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 514.76
//
Query:       MMETSP1061-20121228|35520_1  [L=326]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (326 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1721.14
//
Query:       MMETSP1061-20121228|35532_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 295.84
//
Query:       MMETSP1061-20121228|35550_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.32
# Mc/sec: 218.61
//
Query:       MMETSP1061-20121228|35577_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 700.12
//
Query:       MMETSP1061-20121228|35589_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 553.10
//
Query:       MMETSP1061-20121228|35616_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|35620_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|35622_1  [L=242]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (242 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1330.89
//
Query:       MMETSP1061-20121228|35639_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 379.47
//
Query:       MMETSP1061-20121228|35645_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 365.97
//
Query:       MMETSP1061-20121228|35667_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|35680_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00053   17.1   0.2     0.0015   15.6   0.0    1.8  2  TIGR03659 IsdE: heme ABC transporter, heme-binding protein isdE


Domain annotation for each model (and alignments):
>> TIGR03659  IsdE: heme ABC transporter, heme-binding protein isdE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.09   3.7e+02     118     139 ..      15      36 ..       7      44 .. 0.81
   2 !   15.6   0.0   3.7e-07    0.0015      18      67 ..     145     194 ..     131     225 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.09
    TIGR03659 118 eaeflnlesleslkksikelge 139
                  + +fl++  ++++++si++l+ 
  MMETSP1061-20121228|35680_1  15 SDKFLKMIMIDAIRTSIQQLSV 36 
                  4579999999999999999975 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 3.7e-07
    TIGR03659  18 gcssktekkeeskkeakkeeeerivatsvavaeildkLdldlvgvptssk 67 
                  ++++++++++e++++  +++  +iv +s av+ei ++  ldlv + +ss+
  MMETSP1061-20121228|35680_1 145 SSTKSKQRTKEESVSRLSQNLVKIVFSSKAVTEITERFALDLVFIDESSE 194
                  3333345555666666678889*********************9998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1236.79
//
Query:       MMETSP1061-20121228|35693_1  [L=467]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     2e-116  386.9   7.4   7.6e-116  385.0   0.8    2.0  2  TIGR01242 26Sp45: 26S proteasome subunit P45 family
    1.8e-75  252.4   1.5    2.6e-75  251.9   1.0    1.1  1  TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB
      3e-74  248.4   0.2    4.1e-74  248.0   0.2    1.1  1  TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily
    1.3e-52  177.0   0.9    2.5e-52  176.1   0.3    1.5  2  TIGR03689 pup_AAA: proteasome ATPase
    1.5e-06   25.2   0.2      0.011   12.5   0.1    2.5  2  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit
    1.9e-06   24.6   0.0    2.6e-06   24.1   0.0    1.3  1  TIGR03922 T7SS_EccA: type VII secretion AAA-ATPase EccA
    1.1e-05   22.4   0.2    4.4e-05   20.5   0.2    1.9  1  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    6.3e-05   20.0   0.0    0.00011   19.2   0.0    1.3  1  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
    0.00053   16.8   0.1     0.0036   14.0   0.0    2.2  2  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0024   14.8   0.0     0.0039   14.1   0.0    1.4  1  TIGR02881 spore_V_K: stage V sporulation protein K
     0.0025   14.2   2.2     0.0044   13.3   0.0    2.3  3  TIGR00763 lon: ATP-dependent protease La
     0.0072   13.4   0.0      0.016   12.3   0.0    1.5  1  TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
     0.0078   13.7   0.0      0.022   12.2   0.0    1.7  1  TIGR00678 holB: DNA polymerase III, delta' subunit
     0.0093   12.3   0.3      0.017   11.5   0.0    1.6  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
  ------ inclusion threshold ------
      0.017   12.8   0.1       0.15    9.7   0.1    2.3  2  TIGR01025 rpsS_arch: ribosomal protein S19
      0.017   12.4   0.1      0.074   10.4   0.0    2.0  2  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
      0.028   11.8   0.1        0.3    8.4   0.1    2.3  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.054   11.3   2.5        3.6    5.3   0.0    2.5  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR01242  26Sp45: 26S proteasome subunit P45 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.6   0.5    0.0069       1.6       6      55 ..      60     116 ..      55     119 .. 0.58
   2 !  385.0   0.8  3.3e-118  7.6e-116      56     362 ..     142     454 ..     134     456 .. 0.97

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.0069
    TIGR01242   6 ekirkledekkllekekirlereve.......rlrselerlrsppllvavvvevldd 55 
                  ++i+ l ++ ++++++ +r+++e +         +++++  ++ p+lva vve+l+ 
  MMETSP1061-20121228|35693_1  60 QRIHLLSNDIRVMKSDVQRINHESRgqrdrirENQEKVKLNKQLPYLVANVVEILEP 116
                  55555666666666655555555441111000444445555789**********985 PP

  == domain 2    score: 385.0 bits;  conditional E-value: 3.3e-118
    TIGR01242  56 ervvvksstGpkfvvnvskfidrkelkpGarvalnqrtlaivdvlptekdplvkaleveerpevsyediGGlekqlreireavelplkkpelfeevGieppkGvllyGppGtGktllakavaeetnatfirvvgselvkkyiGeGarlvrevfklakek......apsiifideidaiaakrldsstsGdrevqrtllqllaeldGfdprgnvkviaatnrldildpallrpGrfdrlievplpdleGrleilkihtrkmklaedvdleelaklteGasGadlkaivteaGmfaireerdkvtmedflkavek 362
                  + +vv++st  ++ + +   +d +elkp   v  n+ ++ i++ lp+e d +v+a+ev+erp  +y diGG ++q++e+ eav+lp+ + ++f+ +Gi ppkGvll+GppGtGktlla+a a++tna f+++ g +lv+ +iG+Ga+l+r+ f+lak k      a +i+fideidai++kr   + sGdrevqrt+l+ll++ldGf + + +kviaatnr+d+ldpallr Gr+dr ie+p p++e r +ilkih+rkm+++++v +eela+  e + Ga+lka+++eaGm a+r+e+ ++  edf++a+  
  MMETSP1061-20121228|35693_1 142 RSAVVRTSTRQTIFLPIPGLVDPDELKPSDLVGTNKDSYLILEKLPAEFDSRVQAMEVDERPTEEYSDIGGADQQIQELIEAVVLPMTHRDMFQTIGIRPPKGVLLHGPPGTGKTLLARACANQTNAIFLKLAGPQLVQMFIGDGAKLIRDAFELAKAKiekgvsAGAILFIDEIDAIGTKRFGGDQSGDREVQRTMLELLSQLDGFSSNEMIKVIAATNRPDVLDPALLRSGRLDRKIELPHPNEEARAKILKIHSRKMQVSSEVVFEELARSCEDFNGAQLKAVCVEAGMLALRRESVEIMHEDFVEAITV 454
                  56899********************************************************************************************************************************************************76555665679**********************************************************************************************************************************************975 PP

>> TIGR01241  FtsH_fam: ATP-dependent metallopeptidase HflB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.9   1.0   1.1e-77   2.6e-75      45     298 ..     197     457 ..     188     464 .. 0.92

  Alignments for each domain:
  == domain 1    score: 251.9 bits;  conditional E-value: 1.1e-77
    TIGR01241  45 lleeekvkvtfkdvaGideakeelveivdf.LknpkkftklGakiPkGvllvGpPGtGktLlakavaGeagvpffsisGsdfvemfvGvGasrvrDlfeqakkn......aPciifiDeiDavGrkrgaglgggndereqtLnqlLvemDGfetnegvivlaatnrpdvLDkaLlrPGrfDrqvvvdkPdlkgreeilkvhakkvklaeevdlkkvarrtpGfsGadlanlvneaallaarknkkevtlkeleeavdrvia 298
                  +  +e+++ +++d+ G+d++ +el+e v   + + + f+ +G + PkGvll GpPGtGktLla+a+a + +  f++++G ++v+mf+G Ga+ +rD fe ak +      a +i+fiDeiDa+G kr  g  +g  e+++t+  lL ++DGf++ne + v+aatnrpdvLD+aLlr Gr+Dr++ + +P+ + r +ilk+h++k+++++ev  +++ar+   f Ga+l+ ++ ea +la r+++ e+  +++ ea+  v a
  MMETSP1061-20121228|35693_1 197 MEVDERPTEEYSDIGGADQQIQELIEAVVLpMTHRDMFQTIGIRPPKGVLLHGPPGTGKTLLARACANQTNAIFLKLAGPQLVQMFIGDGAKLIRDAFELAKAKiekgvsAGAILFIDEIDAIGTKRFGGDQSGDREVQRTMLELLSQLDGFSSNEMIKVIAATNRPDVLDPALLRSGRLDRKIELPHPNEEARAKILKIHSRKMQVSSEVVFEELARSCEDFNGAQLKAVCVEAGMLALRRESVEIMHEDFVEAITVVAA 457
                  3445688889***************966543888999**************************************************************99975444444899**********************************************************************************************************************************************975543 PP

>> TIGR01243  CDC48: AAA family ATPase, CDC48 subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  248.0   0.2   1.8e-76   4.1e-74     446     693 ..     201     449 ..     171     463 .. 0.90

  Alignments for each domain:
  == domain 1    score: 248.0 bits;  conditional E-value: 1.8e-76
    TIGR01243 446 evpnvkwediggleevkqelreavewplkakevfeklgirppkgvllfgppgtgktllakavatesganfiavrgpeilskwvgesekaireifrkarq......aapaiifldeidaiapar..gadlseavtdrivnqllteldgleensdvvviaatnrpdildpallrpgrldrlilvpapdeearleifkihtrslplaedvdleelakktegytgadieavvreaalaalresvksvakekleaeekeil 693
                  e p  +++digg ++  qel eav  p+ ++++f+ +girppkgvll+gppgtgktlla+a a++++a f+ + gp+++  ++g+  k ir+ f+ a+       +a ai+f+deidai  +r  g + +++  +r + +ll++ldg+  n+ + viaatnrpd+ldpallr grldr i +p p+eear +i+kih+r+++++ +v +eela+  e + ga+++av+ ea ++alr+          e  +++++
  MMETSP1061-20121228|35693_1 201 ERPTEEYSDIGGADQQIQELIEAVVLPMTHRDMFQTIGIRPPKGVLLHGPPGTGKTLLARACANQTNAIFLKLAGPQLVQMFIGDGAKLIRDAFELAKAkiekgvSAGAILFIDEIDAIGTKRfgGDQSGDREVQRTMLELLSQLDGFSSNEMIKVIAATNRPDVLDPALLRSGRLDRKIELPHPNEEARAKILKIHSRKMQVSSEVVFEELARSCEDFNGAQLKAVCVEAGMLALRRESV-------EIMHEDFV 449
                  568899****************************************************************************************9776433444489***************985666777789999***************************************************************************************************96433.......33333333 PP

>> TIGR03689  pup_AAA: proteasome ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.0     0.015       3.4       7     103 ..      66     188 ..      60     198 .. 0.81
   2 !  176.1   0.3   1.1e-54   2.5e-52     115     379 ..     138     399 ..     122     447 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.015
    TIGR03689   7 eaeasslaakneklvealkaareklaelkeqldalaqPPstygtllev........................aadeetvevftagrkmr.vavspeveaaelkaGaevrlneal.lvvealda 103
                  ++ ++ +++  +++ +  +  r+++ e +e+++  +q P+  + ++e+                        + +++++ v t++r+   + +   v+  elk+ + v  n+++ l++e+l+a
  MMETSP1061-20121228|35693_1  66 SNDIRVMKSDVQRINHESRGQRDRIRENQEKVKLNKQLPYLVANVVEIlepdaedgleeeekesgdaldadaTRKTRSAVVRTSTRQTIfLPIPGLVDPDELKPSDLVGTNKDSyLILEKLPA 188
                  55566666666777777788899***********************999********************997778888999999999752788889999********9998765145566555 PP

  == domain 2    score: 176.1 bits;  conditional E-value: 1.1e-54
    TIGR03689 115 vlddgralvvdkadeervvklagalaeeklraGdsllvdlkaglaleavpk...seveelvleevPdvtyadiGGldsqieqirdavelPflhkelyreydlkpPkGvllyGPPGcGktliakavanslaekvaedgeaksyflnikGPellnkyvGeterqirliferarekaaegrP..vvvffdemdslfrtr.GsGvssdvet.tvvPqllaeldGveslenviviGasnredlidPailrPGrldvkirierPdaeaaadilakylt 379
                  + ++  a+v + + +   + + g +   +l++ d +  ++ + l le++p+   s v+ + ++e P   y+diGG d+qi+++ +av lP++h+++++  +++pPkGvll+GPPG+Gktl+a+a an           ++++fl++ GP+l++ ++G+  + ir  fe a+ k ++g     ++f+de+d++   r G   s d e    +  ll++ldG  s e + vi a+nr d++dPa+lr Grld ki +  P++ea a+il+ +  
  MMETSP1061-20121228|35693_1 138 TRKTRSAVVRTSTRQTIFLPIPGLVDPDELKPSDLVGTNKDSYLILEKLPAefdSRVQAMEVDERPTEEYSDIGGADQQIQELIEAVVLPMTHRDMFQTIGIRPPKGVLLHGPPGTGKTLLARACANQ----------TNAIFLKLAGPQLVQMFIGDGAKLIRDAFELAKAKIEKGVSagAILFIDEIDAIGTKRfGGDQSGDREVqRTMLELLSQLDGFSSNEMIKVIAATNRPDVLDPALLRSGRLDRKIELPHPNEEARAKILKIHSR 399
                  44444445555555555555555555669999*****************9733357888999**************************************************************9984..........5689*********************************9975237**********988845557888885245679***************************************************99987643 PP

>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   0.00016     0.036      47      83 ..     242     278 ..     238     297 .. 0.82
   2 !   12.5   0.1   4.8e-05     0.011     233     304 ..     292     358 ..     279     409 .. 0.63

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00016
    TIGR00390  47 PknilmiGstGvGkteiarrlaklaeaPfikveatkf 83 
                  Pk +l+ G+ G Gkt +ar  a  ++a f+k+   + 
  MMETSP1061-20121228|35693_1 242 PKGVLLHGPPGTGKTLLARACANQTNAIFLKLAGPQL 278
                  9******************************976655 PP

  == domain 2    score: 12.5 bits;  conditional E-value: 4.8e-05
    TIGR00390 233 dseeikqeavdrveesG.iifideidkiakkgessgadvsreGvqrdllPiveGstvstkyGsvktdhilfia 304
                  d  e+ +  +++  + G i+fideid i +k     +   r  vqr +l ++         G    + i  ia
  MMETSP1061-20121228|35693_1 292 DAFELAKAKIEKGVSAGaILFIDEIDAIGTKRFGGDQSGDR-EVQRTMLELLSQ-----LDGFSSNEMIKVIA 358
                  56677777777755555389*********999555444445.5****9988643.....33444455555555 PP

>> TIGR03922  T7SS_EccA: type VII secretion AAA-ATPase EccA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.1e-08   2.6e-06     286     403 ..     215     334 ..     195     414 .. 0.77

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.1e-08
    TIGR03922 286 eqvaalkssvevalvRaerGlavaqr.skHlllaGPPGtGkttiArvvakiyaGlgv.lrkpevrEvsRadligeyigeseaktnelidk..aLggvlFlDEayaLvekrdgakddfGleai 403
                  +q++ l ++v + ++ +++  ++  r  k +ll GPPGtGkt +Ar+ a++   + + l+ p+++ +   d  ++ i ++ +  ++ i+k  + g +lF+DE+ a+  kr g +d+ G   +
  MMETSP1061-20121228|35693_1 215 QQIQELIEAVVLPMTHRDMFQTIGIRpPKGVLLHGPPGTGKTLLARACANQTNAIFLkLAGPQLVQMFIGD-GAKLIRDAFELAKAKIEKgvSAGAILFIDEIDAIGTKRFG-GDQSGDREV 334
                  5666666666666666666555555424678999*****************9888766899**99987666.356777777777777776335699********99988655.344444433 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.2     2e-07   4.4e-05      33      93 ..     245     319 ..     240     323 .. 0.69

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 2e-07
    TIGR00635  33 vllyGPPGlGkttlakiiakelgvklkitsgpalekp..gDlaail............taleegdvlfiDeihrl 93 
                  vll GPPG Gkt la+  a++ ++     +gp+l +   gD a ++              +++g +lfiDei ++
  MMETSP1061-20121228|35693_1 245 VLLHGPPGTGKTLLARACANQTNAIFLKLAGPQLVQMfiGDGAKLIrdafelakakieKGVSAGAILFIDEIDAI 319
                  8**********************9999999999876433343333211111111111144777899****99887 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   4.7e-07   0.00011     120     209 ..     245     330 ..     235     345 .. 0.73

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 4.7e-07
    TIGR00382 120 illiGptGsGktllaqtlakeldvpfaiadattlteaGyvGedvenillkllqaadydvek..aekGiiyideidkiarksenasitrdvsG 209
                  +ll Gp G+Gktlla++ a++ +  f       l +  ++G+    ++   ++ a+ ++ek  +   i++ideid i  k        d sG
  MMETSP1061-20121228|35693_1 245 VLLHGPPGTGKTLLARACANQTNAIFLKLAGPQLVQ-MFIGDGA-KLIRDAFELAKAKIEKgvSAGAILFIDEIDAIGTKRF----GGDQSG 330
                  7999******************98776555566665.6999765.566777777777777621456799********87753....234444 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.6e-05    0.0036      36      65 ..     235     267 ..     196     274 .. 0.69
   2 ?   -0.3   0.0      0.35        80     128     180 ..     306     367 ..     291     458 .. 0.58

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.6e-05
    TIGR02928  36 r..g.srpsnvliyGktGtGKtavtkkvlkele 65 
                  +  g + p+ vl+ G++GtGKt+ +++  ++ +
  MMETSP1061-20121228|35693_1 235 QtiGiRPPKGVLLHGPPGTGKTLLARACANQTN 267
                  2443156789****************9999876 PP

  == domain 2    score: -0.3 bits;  conditional E-value: 0.35
    TIGR02928 128 edsliivLDEiDklv.kkeade..........lLyeLsraeengdlekakvsvigisndlkfle 180
                  +  +i+ +DEiD +  k+ + +          +L  Ls++  +g  ++  + vi+ +n  ++l+
  MMETSP1061-20121228|35693_1 306 SAGAILFIDEIDAIGtKRFGGDqsgdrevqrtMLELLSQL--DGFSSNEMIKVIAATNRPDVLD 367
                  4557778888888853332222455666666444445555..5555556677777777665544 PP

>> TIGR02881  spore_V_K: stage V sporulation protein K
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.7e-05    0.0039      45     127 ..     245     332 ..     210     407 .. 0.72

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.7e-05
    TIGR02881  45 mifkGnPGtGkttvarllaklfkelnvlskGhlieveradlvGeyiGhtaqktre.......vikk..alGGvlfideaysla..r.GGekdfGk 127
                  ++++G PGtGkt +ar  a+  + + +       ++    lv  +iG+ a+ +r+       +i+k  + G +lfide  ++   r GG++   +
  MMETSP1061-20121228|35693_1 245 VLLHGPPGTGKTLLARACANQTNAIFL-------KLAGPQLVQMFIGDGAKLIRDafelakaKIEKgvSAGAILFIDEIDAIGtkRfGGDQSGDR 332
                  5789**************998777655.......44445566666666666666511111114544334699*****987763113344444444 PP

>> TIGR00763  lon: ATP-dependent protease La
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1      0.52   1.2e+02      83     129 ..      47      92 ..      21     133 .. 0.62
   2 !   13.3   0.0   1.9e-05    0.0044     356     385 ..     245     274 ..     240     277 .. 0.92
   3 ?   -1.9   0.0      0.77   1.8e+02     422     437 ..     309     329 ..     299     347 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.52
    TIGR00763  83 ketlkvvleglrrikikelvekeevlvvkveelkeeelekddeevka 129
                  +++++ + +g  r +i+ l+++ +v+++ v+++++e+  ++d+ ++ 
  MMETSP1061-20121228|35693_1  47 DDETRTMSNGELRQRIHLLSNDIRVMKSDVQRINHESRGQRDR-IRE 92 
                  4555566666666666666666666666666666433322222.222 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.9e-05
    TIGR00763 356 lclvGPPGVGKtSlaksiAkalnrkfvrls 385
                  + l+GPPG GKt la++ A+ +n  f++l+
  MMETSP1061-20121228|35693_1 245 VLLHGPPGTGKTLLARACANQTNAIFLKLA 274
                  579***********************9986 PP

  == domain 3    score: -1.9 bits;  conditional E-value: 0.77
    TIGR00763 422 PlillDEiDKlg.....ssvr 437
                   ++++DEiD +g      +  
  MMETSP1061-20121228|35693_1 309 AILFIDEIDAIGtkrfgGDQS 329
                  5789*******9643333333 PP

>> TIGR01526  nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0     7e-05     0.016     163     251 ..     243     327 ..     233     341 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 7e-05
    TIGR01526 163 ktvailGgestGkstLvrklaeklnttsaeeyareyeeaklggdealkysdyakivlGqadaedaavrsadkvvfiD.tDaittqvfakl 251
                  k v + G+  tGk+ L+r+ a++ n+ + +  + ++++ + g+  +l+ + + ++++ ++   +  v sa  ++fiD  Dai t+ f   
  MMETSP1061-20121228|35693_1 243 KGVLLHGPPGTGKTLLARACANQTNAIFLKLAGPQLVQMFIGDGAKLIRDAF-ELAKAKI---EKGV-SAGAILFIDeIDAIGTKRFGGD 327
                  557778999*******************************997778888777.4555444...3344.5678999984599999988655 PP

>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   9.6e-05     0.022      12      39 ..     240     267 ..     232     275 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 9.6e-05
    TIGR00678  12 rlahAlLfaGpeGvGkealaealakall 39 
                  r ++ +L++Gp+G+Gk+ la+a a++++
  MMETSP1061-20121228|35693_1 240 RPPKGVLLHGPPGTGKTLLARACANQTN 267
                  567899******************9876 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.5   0.0   7.4e-05     0.017     170     200 ..     237     267 ..     181     300 .. 0.74
   2 ?   -3.6   0.1       2.6     6e+02     265     275 ..     307     317 ..     304     320 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 7.4e-05
    TIGR02903 170 laspfpqhiilyGppGvGkttaarlaleeak 200
                  +    p+ ++l+GppG Gkt  ar + +++ 
  MMETSP1061-20121228|35693_1 237 IGIRPPKGVLLHGPPGTGKTLLARACANQTN 267
                  33334899****************9987765 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2.6
    TIGR02903 265 hGGvlfideiG 275
                   G +lfidei 
  MMETSP1061-20121228|35693_1 307 AGAILFIDEID 317
                  589******96 PP

>> TIGR01025  rpsS_arch: ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0       1.1   2.4e+02      57      77 ..     137     157 ..     121     161 .. 0.83
   2 ?    9.7   0.1   0.00067      0.15      12     102 ..     342     434 ..     336     446 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 1.1
    TIGR01025  57 atkgkkpevvrthlrdmiilp 77 
                  at+  +  vvrt  r+ i lp
  MMETSP1061-20121228|35693_1 137 ATRKTRSAVVRTSTRQTIFLP 157
                  455567899********9998 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 0.00067
    TIGR01025  12 leelldmsleelvkllparqrrklkrGltrkqkkllkklrkakkeatkgkkpevvrthlrdmiilpemvGlvv....gvynGkefveveikpemi 102
                  l +l   s +e++k+++a +r  +      +  +l +k+   +   ++  + ++++ h r+m +  e+v   +      +nG ++  v ++  m+
  MMETSP1061-20121228|35693_1 342 LSQLDGFSSNEMIKVIAATNRPDVLDPALLRSGRLDRKIELPHP--NEEARAKILKIHSRKMQVSSEVVFEELarscEDFNGAQLKAVCVEAGML 434
                  67888999**************99999999999******99666..5555799***********9999865441111457777777777776665 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0       2.1   4.7e+02      54      69 ..     163     178 ..     140     184 .. 0.78
   2 ?   10.4   0.0   0.00032     0.074      24      54 ..     245     275 ..     239     291 .. 0.84

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 2.1
    TIGR02640  54 GdaelktsdlvGeeag 69 
                    +elk sdlvG +++
  MMETSP1061-20121228|35693_1 163 DPDELKPSDLVGTNKD 178
                  5689********8765 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 0.00032
    TIGR02640  24 vhlrGPaGtGktslalhvakkrdrPvvllnG 54 
                  v l GP GtGkt la++ a++ +   + l G
  MMETSP1061-20121228|35693_1 245 VLLHGPPGTGKTLLARACANQTNAIFLKLAG 275
                  7799****************98866665555 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4   0.1    0.0013       0.3      41      73 ..     245     272 ..     232     419 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.0013
    TIGR03420  41 lylwGesgsGksHLLqAacaaaeeagksaiylp 73 
                  + l G++g+Gk+ L +A+++++++      +l+
  MMETSP1061-20121228|35693_1 245 VLLHGPPGTGKTLLARACANQTNAI-----FLK 272
                  7899*************99988654.....333 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   1.5     0.053        12      74     149 ..      25      96 ..      14     150 .. 0.50
   2 ?    5.3   0.0     0.016       3.6     170     212 ..     214     256 ..     181     260 .. 0.74

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.053
    TIGR03499  74 epkklskaeekeekekeaeekaaeaaqeaekkleeae.............eelrkelkalkellekqlselal....eeedperakllkklle 149
                  e+k+++++++++ ++++  +++ +            e               l+++++ +k+ ++++++e +                ++ ++
  MMETSP1061-20121228|35693_1  25 ESKQAETSDSSAPAPQPEPDPEDD------------EtrtmsngelrqriHLLSNDIRVMKSDVQRINHESRGqrdrI---------RENQEK 96 
                  111111111111122222222222............133444422333455556666666666666666553233222.........222222 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.016
    TIGR03499 170 aeeareklreaLekklsvkkeedeilekggviaLvGptGvGKT 212
                  +++++e +++++  + + + +++   + ++ ++L Gp+G GKT
  MMETSP1061-20121228|35693_1 214 DQQIQELIEAVVLPMTHRDMFQTIGIRPPKGVLLHGPPGTGKT 256
                  5555555555555666666666667778899***********9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (467 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                        18  (0.0043881); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              18  [number of targets reported over threshold]
# CPU time: 0.44u 0.13s 00:00:00.57 Elapsed: 00:00:00.42
# Mc/sec: 1467.59
//
Query:       MMETSP1061-20121228|35704_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.11s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1128.51
//
Query:       MMETSP1061-20121228|35709_1  [L=131]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0044   13.8   0.2      0.005   13.6   0.1    1.1  1  TIGR03773 anch_rpt_wall: putative ABC transporter-associated repeat protein


Domain annotation for each model (and alignments):
>> TIGR03773  anch_rpt_wall: putative ABC transporter-associated repeat protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.1   1.2e-06     0.005     426     513 ..      43     130 ..      30     131 .] 0.78

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.2e-06
    TIGR03773 426 kvsdtetltfaVgdsadpvaavkklk.aatktdgapggkgcelaakgaekdgeksdkgetGllantgaglvalalvlvgagllvllarR 513
                  +++ t t+t+ ++ + ++++ + + k a+++ d  + g+++   ++g e++     ++e+ ++ + ++g+ ala++++ a  ++  arR
  MMETSP1061-20121228|35709_1  43 NITITITITIEIDTNSNSNSNSADSKlASSHRDVDDRGSPASAFGSGLEGSVSPL-SSESRSIQRGNSGAFALAIAIAIALDFAFDARR 130
                  5677788999999888888877444415566677889999988888888887654.5677789**************999888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (131 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 864.53
//
Query:       MMETSP1061-20121228|35713_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.03    9.8  10.6      0.036    9.5   7.3    1.1  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.066    8.7  14.5      0.082    8.4  10.1    1.1  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.5   7.3   1.7e-05     0.036     675     813 ..      58     196 ..      12     209 .. 0.54

  Alignments for each domain:
  == domain 1    score: 9.5 bits;  conditional E-value: 1.7e-05
    TIGR02169 675 eklerlrerleeLereleslqselrriekrldelssklsd.aekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriea 813
                   + e++++ + +  +++e++++ ++r+   + e s+  ++ +  +++e+e  ++ l++e +++k+   e  ++ls+l+++l   +e+ ++l +ei++le +  + +e+++ l++++++++++ i +  e+++++v r++a
  MMETSP1061-20121228|35713_1  58 WERESMSASIPSSTDNKEEAFDAIARALCSIIEDSKTEQElEYSMVKEAEGVQSGLRDEIQRAKNLCIEESNDLSYLSDQLSRFQEQRHNLLKEIDNLEYRQRASQEKIA-LYQMEASQELDMIMDVEEQMKQQVPRLRA 196
                  33344444444444444444444444433333333333330233444444455555555555555555555555555555555555555555555555555555555553.55555555555555555555555555555 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.4  10.1     4e-05     0.082     748     894 ..      45     190 ..       2     208 .. 0.36

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 4e-05
    TIGR02168 748 eerlaqlekeleeleeereeleeeleeaeeelkeaeeeiee.leaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealael 894
                  ++ +++l+k +++   ere+ ++ + +++++++ea + i++ l + ie+ k+e + + ++++e+e   + l++e++++++ + + +++++ l+++l + +eq  +l +ei +le +++  +e+++  + e+ + l+  + +ee+++++
  MMETSP1061-20121228|35713_1  45 RSPMERLKKLNAQ--WERESMSASIPSSTDNKEEAFDAIARaLCSIIEDSKTEQELEYSMVKEAEGVQSGLRDEIQRAKNLCIEESNDLSYLSDQLSRFQEQRHNLLKEIDNLEYRQRASQEKIALYQMEASQELDMIMDVEEQMKQQ 190
                  2222222222222..2222223333333333333333332202222222222222222233333333334444444444444444444444444444444444444444444444444444444433333333333333333333332 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 1309.74
//
Query:       MMETSP1061-20121228|35722_1  [L=1027]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1027 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.32
# Mc/sec: 4236.03
//
Query:       MMETSP1061-20121228|35732_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       250  (0.0609459); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2635.23
//
Query:       MMETSP1061-20121228|35754_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 541.16
//
Query:       MMETSP1061-20121228|35766_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 465.44
//
Query:       MMETSP1061-20121228|35777_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0078   13.9   0.0      0.011   13.5   0.0    1.1  1  TIGR03135 malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase


Domain annotation for each model (and alignments):
>> TIGR03135  malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.6e-06     0.011      21      78 ..     102     161 ..      90     164 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.6e-06
    TIGR03135  21 eepaaepavrdwlaaglplvvrR..rapadagqvplGlplpgsarkrRvalavareaier 78 
                  e+ + +++v+++l+  +++vvr   +++ +++++ lG++ +++a+  R+al+  +++i++
  MMETSP1061-20121228|35777_1 102 EKRKVDHFVEAVLDSTRYFVVRVkdEKANREAMIGLGFRDREEAGDFRAALTKYEQDIKK 161
                  5566788999************97766777888999***************988888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1095.51
//
Query:       MMETSP1061-20121228|35784_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 944.76
//
Query:       MMETSP1061-20121228|35781_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-60  200.7   3.2    4.4e-60  200.1   2.2    1.2  1  TIGR00980 3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
      2e-07   28.5   3.0    3.2e-07   27.8   2.1    1.3  1  TIGR00983 3a0801s02tim23: mitochondrial import inner membrane translocase subunit


Domain annotation for each model (and alignments):
>> TIGR00980  3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  200.1   2.2   2.1e-63   4.4e-60       6     139 ..      10     143 ..       6     166 .. 0.92

  Alignments for each domain:
  == domain 1    score: 200.1 bits;  conditional E-value: 2.1e-63
    TIGR00980   6 rePcPyrilddiGgafamGtiGGaifqaikGfrnspkGeklvgalaaiktrapvlGgnfavwGGlfstidcalvavrkkedPwnsivsGaltGallavrsGpkamagsailgavllalieGvGlvltrfaaaqa 139
                  rePcP+ri+dd+Ggaf+mG iGG+++++ikG r +p G +l g+l+a+++rapvlGg+fa+wGG+f+ +dc+l a+r+kedPwnsi+sGa tG+ la+r+Gp+a a++a++g+vllalieG+G++++++ a   
  MMETSP1061-20121228|35781_1  10 REPCPWRIIDDVGGAFCMGNIGGGLWHSIKGARMAPAGARLAGSLSAVQARAPVLGGQFAIWGGIFACYDCSLTALRQKEDPWNSIISGAATGGTLALRAGPQAAASAAAVGGVLLALIEGMGIMIGKMFAPPS 143
                  9*****************************************************************************************************************************99987544 PP

>> TIGR00983  3a0801s02tim23: mitochondrial import inner membrane translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   2.1   1.6e-10   3.2e-07      38     146 ..      21     125 ..      16     128 .. 0.90

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.6e-10
    TIGR00983  38 tGtayltGlaiGalvGlreGlketesisttklrlnriLnsvtrrGallgnslGilaLvYnainslieaargkedvansvaAGaltGalykstrGlraiavssalvataa 146
                  +G+a+  G   G+l+  ++G +    + ++  rl   L  v  r ++lg +  i + +++  +  + a+r+ked +ns+  Ga tG       G +a+a ++a+++++ 
  MMETSP1061-20121228|35781_1  21 VGGAFCMGNIGGGLWHSIKGAR----MAPAGARLAGSLSAVQARAPVLGGQFAIWGGIFACYDCSLTALRQKEDPWNSIISGAATGGTLALRAGPQAAASAAAVGGVLL 125
                  6888888988898888888866....5666789********************************************************************99998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1235.42
//
Query:       MMETSP1061-20121228|35797_1  [L=191]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (191 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1145.91
//
Query:       MMETSP1061-20121228|35802_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-14   49.8   0.0    3.1e-10   36.9   0.0    2.1  2  TIGR02350 prok_dnaK: chaperone protein DnaK
    4.5e-09   33.2   0.0    3.4e-07   26.9   0.0    2.1  2  TIGR01991 HscA: Fe-S protein assembly chaperone HscA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.8   0.0   1.2e-05     0.025       2      44 ..       7      51 ..       6      66 .. 0.86
   2 !   36.9   0.0   1.5e-13   3.1e-10     163     370 ..     117     322 ..     112     331 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 1.2e-05
    TIGR02350  2 iiGidLGttnsvvavle..ggepvvianaeGarttPsvvafkkdg 44
                 ++GidLG  ns va ++  +++p   +n++G+r+t  v+   ++g
  MMETSP1061-20121228|35802_1  7 AVGIDLGSYNSRVATFDdhSNHPICAHNSDGHRATRVVLPADESG 51
                 59**************73357899999*******99888776666 PP

  == domain 2    score: 36.9 bits;  conditional E-value: 1.5e-13
    TIGR02350 163 iinePtaaaLayGldke...kkdekilvfdlGGGtfdvsile.lgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegi...dLskdkmalqrlkeaaekakieLssaleteinlpfitadasgpkhlelkltrakfeelvedlvertkepvkkalkdaklsaseidevilvGGstriPavqelvkelvg.kepnksvnPdevvaiGaaiqg 370
                  +i e +a +Lay ld+      +++ilv d G  ++ v++l     g    +st+    + G+ + e++ + +a++f++++ +   ++ + k+a  +l+ a e+  + +  +++ +i +  +       ++ +++++ ak++ l  +lv+++k    + l+++  ++s+id v+l G +     ++ lvk+++  k  + +++P e++aiG   q+
  MMETSP1061-20121228|35802_1 117 VITEAAAVCLAYDLDERtasMASKRILVVDGGASALKVALLRgTTSGLWCLESTKKTDAVHGEALVETLGQSVAQQFETKHRFprgEVWQSKKARAKLQRACENGLTTMQINNTLTIRVESLY----EGMDCQVTISEAKWDYLSGKLVRSAK----DFLTKTATEHSQIDTVLLSGNMH--AWLKPLVKSIFPgKLLSSGIDPSEAIAIGCTKQA 322
                  899************9722245789****************835588999******************************9774447889999999999999997665555555555444333....35678999*************98765....5677788899********99876..4689999999854999*************99887 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.0    0.0014       2.9       1      28 [.       7      36 ..       7      53 .. 0.73
   2 !   26.9   0.0   1.7e-10   3.4e-07     164     361 ..     118     324 ..     115     335 .. 0.76

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.0014
    TIGR01991  1 avGiDlGttnslvaav..regkaevlkdee 28
                 avGiDlG  ns va+   +++++++ ++++
  MMETSP1061-20121228|35802_1  7 AVGIDLGSYNSRVATFddHSNHPICAHNSD 36
                 79*************943344455555544 PP

  == domain 2    score: 26.9 bits;  conditional E-value: 1.7e-10
    TIGR01991 164 lnePtaAAvAYGldk....aseglyavYDLGGGtFDvsiLk.lekGvFevlatgGdsaLGGDDfDralaklilkkagleaelsk....eekkellkaaraakeaLtdae.....evevevklegkdlkaklsreeleelieelvkktleivrralrdaglkveeikevvlvGGstrvplvrqavaelFkkepltd.ldPdevvAlGAalqadl 361
                  + e  a  +AY ld+     + + ++v D G     v++L+  ++G++   +t    a+ G+ + + l + + ++ ++++++ +    ++kk+  k  ra+ + Lt+ +     +++ve   eg+d+++++s+++ + l  +lv+      ++ l ++  ++++i+ v+l G       ++  v+++F  + l++ +dP e +A+G + qa+ 
  MMETSP1061-20121228|35802_1 118 ITEAAAVCLAYDLDErtasMASKRILVVDGGASALKVALLRgTTSGLWCLESTKKTDAVHGEALVETLGQSVAQQFETKHRFPRgevwQSKKARAKLQRACENGLTTMQinntlTIRVESLYEGMDCQVTISEAKWDYLSGKLVRS----AKDFLTKTATEHSQIDTVLLSGNM--HAWLKPLVKSIFPGKLLSSgIDPSEAIAIGCTKQANW 324
                  678889999*****97766567788999************95678****************************9988886654411112233333444555556665431111134444444889999999999999888888765....6777888888999****9998854..46789********9999755**************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.25
# Mc/sec: 2312.45
//
Query:       MMETSP1061-20121228|35821_1  [L=162]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (162 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1018.20
//
Query:       MMETSP1061-20121228|35820_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1657.78
//
Query:       MMETSP1061-20121228|35836_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 608.62
//
Query:       MMETSP1061-20121228|35848_1  [L=684]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-85  285.2   0.0    4.6e-85  283.8   0.0    1.6  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    4.8e-10   36.6   0.0    1.8e-09   34.7   0.0    1.9  2  TIGR02731 phytoene_desat: phytoene desaturase
    5.8e-10   36.3   0.0    4.2e-09   33.4   0.0    1.9  2  TIGR02734 crtI_fam: phytoene desaturase
    9.3e-07   25.9   0.0    1.4e-06   25.3   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
    1.1e-06   26.1   0.0    4.3e-06   24.1   0.0    1.8  2  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    1.7e-06   25.0   0.0    0.00014   18.7   0.0    2.1  2  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    3.3e-05   20.6   0.0      0.014   11.9   0.0    2.1  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    0.00018   19.1   1.3    0.00029   18.4   0.2    1.8  2  TIGR02032 GG-red-SF: geranylgeranyl reductase family
    0.00019   18.4   0.0    0.00034   17.6   0.0    1.4  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0031   14.5   0.1     0.0051   13.8   0.1    1.3  1  TIGR01790 carotene-cycl: lycopene cyclase family protein
     0.0078   11.8   0.1      0.011   11.3   0.1    1.1  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0087   13.0   0.2      0.015   12.2   0.1    1.3  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
  ------ inclusion threshold ------
      0.028   11.1   0.0       0.04   10.5   0.0    1.1  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
      0.042   10.5   0.0      0.061   10.0   0.0    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family


Domain annotation for each model (and alignments):
>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  283.8   0.0   1.6e-87   4.6e-85       4     469 ..      77     596 ..      74     597 .. 0.86

  Alignments for each domain:
  == domain 1    score: 283.8 bits;  conditional E-value: 1.6e-87
    TIGR00562   4 kvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy.TrkesGyllEkGprtlleskegildllkdlGleavlvsidktdkrfvlkn...............kgklvpv..Pskiselvkf.lLlslgkklraglmleeirkks.pgkdeSveefvrrrlGdevlenliepllsGiYagDvskLSlkrtfkklykaeqkhgS........likgmr....saikktknlpkgktlndlsk.alGkdvlalakgLetlpeevekrlkekk.vkvvkgekvtklekrganet......leakdG.vkvetdsvvltvpakkaaklLkelsesaskeldki.........qsppvilVnlglPekd..........vidaelkgfgllvsrsnkkkilgvifssklfpnraPegkllltayiGgatdeeivelseeeiiniVkedLkkvlqisn...pkklevrkWeralPqfhvGydaileeakrkllesayegvflgGnslsgvgvpdciedgkeaalevlkfls 469
                  ++ v+GgGisG ++a+ l+++  +v++vl Ea+d  GG+++  r+e+G+l+E+Gp+++  + ++i+ +  +lG+++ lv  +++ + +v +n               kg++  v  P+ + ++    +Lls  +k+rag+++    +k+  gkde + e v r lG+ev+ + i+p++sG+Yag ++ L++k++ +k+ + e    S        l  g      +  k++k+ p +    + ++ ++G+  +++++gL tlp++++k+l+     k+   +k tk+ek+ ++        +e+++G  +++++ vv t+pa+ ++ +L+++ e   + ++ki         ++ppv++V + +P+k+              +l+gfg l +rs+++++lg+++ss+lfp+raP++  ll++yiGg+ d +i +l++eei   V++  ++vl  ++    k ++ ++W+ a+Pq+ +G+  i++e++  + e + +g ++ Gn+ +gv+ pdc++ g+e+a ev++fl+
  MMETSP1061-20121228|35848_1  77 DCLVLGGGISGSTLAHNLDRN--GVDVVLAEARDYLGGNVKsNRDEDGFLWEEGPNSFATQ-PSIVRIAYELGIDDQLVFANESLPPWVNHNgklhplpkgqggkgpKGQIELVfgPNGVLKFALLgQLLSWPGKIRAGIGAFVGHQKPpEGKDETIREWVTRILGEEVFLRCIDPFVSGVYAGNPETLAIKAALPKIARIEDISYSigwnkfgaLFYGGLkrqvELTKERKADPPAP---EWPEfEYGN-PGSFREGLSTLPNAISKELGVGPgEKIRLEHKATKIEKKTNTDGdyyeatFETPNGsKTIKAKTVVSTMPAHCISDVLEPVMEESKEIFEKIredidrigvYYPPVAAVTVAYPKKSfkdvelpngfGNLQDLPGFGSLNPRSEGVRTLGTLWSSSLFPGRAPKDYNLLLNYIGGSRDVGIADLTDEEILAEVDKGCRQVLLQDSappAKLIGMKVWPTAIPQYELGHLPIMKELE--KAEAKLPGFWVCGNYRTGVAFPDCVTFGYEKAKEVKSFLH 596
                  799****************99..*****************989***************765.55****************************88999999999988855543333388888886543799*********9987766666589************************************************99888885666655544443323334555666555555...444424666.89*****************9655678877788888888766443444455******8899********************99988888887644444445579**************77777666542225899******************************************************************99998886677899**********************..88999*********************************96 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   6.2e-12   1.8e-09       4     156 ..      80     236 ..      77     247 .. 0.77
   2 ?   -1.9   0.0      0.74   2.2e+02     227     294 ..     344     412 ..     340     428 .. 0.71

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 6.2e-12
    TIGR02731   4 iagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffgaypnllqllkelniedrlqwkehsl..ifaqpdk..p......gelsrfdvpdlpaplnvvlailrnndmltweekikfalgllpaivrgqkyveeldkltlsewlkk 156
                  + g+g++g + a+ l   g   ++ eard lgg v + +dedg  +e g    f + p + ++  el+i+d+l + + sl    +++ k  p      g+  + ++ +l    n+vl      ++l+w+ ki+ ++g   a+v  qk  e +d+ t+ ew+ +
  MMETSP1061-20121228|35848_1  80 VLGGGISGSTLAHNLDRNGVDVVLAEARDYLGGNVKSNRDEDGFLWEEGPNS-FATQPSIVRIAYELGIDDQLVFANESLppWVNHNGKlhPlpkgqgGKGPKGQI-ELVFGPNGVLKFALLGQLLSWPGKIRAGIG---AFVGHQKPPEGKDE-TIREWVTR 236
                  789**********************************************887.5789****************999888743234333311111211122223333.344444778777777899999999999999...67888888888876.67888765 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.74
    TIGR02731 227 ggevrlnarlkeivlnedgsvkafaladlegkesfevtadayvsalavdilklll.pkpwkeleffkkl 294
                  g ++rl+ +  +i+ + ++  + ++ +  + + s++++a + vs+++   +  +l p   +  e+f+k+
  MMETSP1061-20121228|35848_1 344 GEKIRLEHKATKIEKKTNTDGDYYEATFETPNGSKTIKAKTVVSTMPAHCISDVLePVMEESKEIFEKI 412
                  556788888888877776666666666666677788999999999998877654415555556666665 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   1.4e-11   4.2e-09       2      66 ..      79     145 ..      78     149 .. 0.90
   2 ?    0.3   0.0      0.16        46     216     276 ..     327     394 ..     324     413 .. 0.80

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 1.4e-11
    TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleed.GfrfDtGP.tvitmPealeelfal 66 
                  +V+G+G++G  lA  L ++G++v + e+rd +GG   + +++ Gf +  GP ++ t+P++++ +++l
  MMETSP1061-20121228|35848_1  79 LVLGGGISGSTLAHNLDRNGVDVVLAEARDYLGGNVKSNRDEdGFLWEEGPnSFATQPSIVRIAYEL 145
                  69*********************************98876544********67889***99988875 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.16
    TIGR02734 216 Gtsalvealaklae.dlggelrlnaeveeieteg......erataveledgerleadavvsnaDlvht 276
                  G+s+l++a+ k    + g ++rl+++ ++ie++        +at  + +  ++++a+ vvs+   +  
  MMETSP1061-20121228|35848_1 327 GLSTLPNAISKELGvGPGEKIRLEHKATKIEKKTntdgdyYEATFETPNGSKTIKAKTVVSTMPAHCI 394
                  78889999988776688999999999999999988888877778888888999*******99776654 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   4.9e-09   1.4e-06       3      62 ..      77     135 ..      75     143 .. 0.88

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 4.9e-09
    TIGR00031   3 dyiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdekgllvhkyGphifhtd 62 
                  d +++G G+sG+ la+ l + +  v++ e r+ +GGn+  + de+g l  + Gp  f t+
  MMETSP1061-20121228|35848_1  77 DCLVLGGGISGSTLAHNLDRNGVDVVLAEARDYLGGNVKSNRDEDGFLW-EEGPNSFATQ 135
                  889*****************************************98765.5577777775 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.5e-08   4.3e-06       2      43 ..      79     120 ..      78     124 .. 0.94
   2 ?   -1.3   0.0      0.74   2.2e+02     222     273 ..     344     406 ..     322     438 .. 0.66

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.5e-08
    TIGR03467   2 vvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedg 43 
                  +v GgG++G + A +L r+Gv+v l+Ear +lGG ++s +d+
  MMETSP1061-20121228|35848_1  79 LVLGGGISGSTLAHNLDRNGVDVVLAEARDYLGGNVKSNRDE 120
                  599**********************************98876 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.74
    TIGR03467 222 ggevrlgtrvreleasagg....iralve..aaeetlaadavvlAvpperaasllpe.....e 273
                  g ++rl+++++++e + +      +a+ e   + +t +a+ vv  +p + + ++l+      +
  MMETSP1061-20121228|35848_1 344 GEKIRLEHKATKIEKKTNTdgdyYEATFEtpNGSKTIKAKTVVSTMPAHCISDVLEPvmeesK 406
                  668999999999987765411113344442233344889999999999999998887443331 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.8e-07   0.00014       4      92 ..      80     168 ..      77     173 .. 0.83
   2 ?    4.2   0.0     0.013       3.7     233     303 ..     344     413 ..     330     436 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.8e-07
    TIGR02732   4 ivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemglhvffgcyanlfkllkkvgaldnll.lkehthlfvnkggei 92 
                  ++g g++g + a +l  +g +v l e+r +lgg v s  d+dg   e g   f  +   + ++   +g  d+l  + e    +vn+ g++
  MMETSP1061-20121228|35848_1  80 VLGGGISGSTLAHNLDRNGVDVVLAEARDYLGGNVKSNRDEDGFLWEEGPNSF-ATQPSIVRIAYELGIDDQLVfANESLPPWVNHNGKL 168
                  789*****************************************999998876.456678888888888888762456666777777776 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.013
    TIGR02732 233 gtklylrhkvkeikfekssdgetrvteliiskaeekkvikadayvaacdvpgikkllpkewr.kfeefdkik 303
                  g k+ l+hk  +i+ ++++dg+    e + ++++++k+ika + v++     i  +l      + e f+ki+
  MMETSP1061-20121228|35848_1 344 GEKIRLEHKATKIEKKTNTDGDY--YEATFETPNGSKTIKAKTVVSTMPAHCISDVLEPVMEeSKEIFEKIR 413
                  889************99999998..5778899*************999999998887544441445566664 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.0   4.9e-05     0.014       4      42 ..      78     116 ..      75     135 .. 0.85
   2 !    6.5   0.0     0.002      0.59     246     306 ..     344     403 ..     324     440 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.9e-05
    TIGR02733   4 vvviGaGiaGltaaallakrGlevtlleaaaqvGGCast 42 
                   +v+G+Gi+G t a  l ++G++v l ea   +GG    
  MMETSP1061-20121228|35848_1  78 CLVLGGGISGSTLAHNLDRNGVDVVLAEARDYLGGNVKS 116
                  579*******************************97654 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.002
    TIGR02733 246 ggelllgqrveaietkeekaeakv.vvdsrkkekeevkaddvvanlpaqsllelleeaalsk 306
                  g ++ l+++ ++ie+k+++       + +  + ++++ka+ vv ++pa+++ ++le++   +
  MMETSP1061-20121228|35848_1 344 GEKIRLEHKATKIEKKTNTDGDYYeATFETPNGSKTIKAKTVVSTMPAHCISDVLEPV--ME 403
                  67899*********9988776544044455677899*****************99832..22 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.2     1e-06   0.00029       2      34 ..      77     109 ..      76     115 .. 0.91
   2 ?   -1.9   0.0       1.5   4.5e+02     105     143 ..     344     387 ..     342     416 .. 0.67

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 1e-06
    TIGR02032   2 DvvvvGaGpaGssaAlrlakkGlrVlllekkel 34 
                  D +v G+G++Gs++A  l ++G++V+l e ++ 
  MMETSP1061-20121228|35848_1  77 DCLVLGGGISGSTLAHNLDRNGVDVVLAEARDY 109
                  99*************************998875 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.5
    TIGR02032 105 gaelllettvlsveied......ekvkvevredekkevtakivig 143
                  g +++le++++++e +       ++++ e+ +  +k+++ak v+ 
  MMETSP1061-20121228|35848_1 344 GEKIRLEHKATKIEKKTntdgdyYEATFETPN-GSKTIKAKTVVS 387
                  56677777777755555666744455555554.589999999986 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0   1.2e-06   0.00034       2      36 ..      78     112 ..      77     119 .. 0.88

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 1.2e-06
    TIGR03197   2 vavIGaGiAgaalalsLarrGvqvtllekdeklaq 36 
                   +v+G+Gi+g++la++L r Gv v l e+++ l+ 
  MMETSP1061-20121228|35848_1  78 CLVLGGGISGSTLAHNLDRNGVDVVLAEARDYLGG 112
                  589*************************9988775 PP

>> TIGR01790  carotene-cycl: lycopene cyclase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   1.7e-05    0.0051       1      37 [.      77     113 ..      77     117 .. 0.95

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.7e-05
    TIGR01790   1 DliviGgGlAglaiAlelakpglrvqlieaapklpfn 37 
                  D++v GgG +g  +A +l + g +v+l ea + l++n
  MMETSP1061-20121228|35848_1  77 DCLVLGGGISGSTLAHNLDRNGVDVVLAEARDYLGGN 113
                  9****************************99999887 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.1   3.7e-05     0.011     166     212 ..      73     119 ..      51     123 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.7e-05
    TIGR01372 166 nahcDvLvvGaGpaGLaaAraAaraGarvilvdeqaeaGGsllseae 212
                      D Lv+G+G +G + A++  r+G+ v+l++ +   GG+++s+++
  MMETSP1061-20121228|35848_1  73 SDVIDCLVLGGGISGSTLAHNLDRNGVDVVLAEARDYLGGNVKSNRD 119
                  556799***********************************998874 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.1   5.3e-05     0.015       2      30 ..      79     107 ..      78     114 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 5.3e-05
    TIGR02352   2 lviGgGviGlsvAveLakrghkvtllekd 30 
                  lv+GgG+ G+++A++L ++g +v l+e +
  MMETSP1061-20121228|35848_1  79 LVLGGGISGSTLAHNLDRNGVDVVLAEAR 107
                  79***********************9977 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00014      0.04       1      34 [.      77     109 ..      77     122 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00014
    TIGR01984   1 dviivGgglvGlslAlaLsrksklkialieaksa 34 
                  d +++Ggg++G++lA  L+r++ +++ l ea++ 
  MMETSP1061-20121228|35848_1  77 DCLVLGGGISGSTLAHNLDRNG-VDVVLAEARDY 109
                  6789******************.*******9875 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0   0.00021     0.061       1      34 [.      77     109 ..      77     138 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00021
    TIGR01988   1 divIvGgGlvGlalAlaLassadlkvalveakaa 34 
                  d ++ GgG+ G++lA +L++++ ++v l ea++ 
  MMETSP1061-20121228|35848_1  77 DCLVLGGGISGSTLAHNLDRNG-VDVVLAEARDY 109
                  7799***************998.99999999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (684 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        41  (0.00999512); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.48u 0.16s 00:00:00.64 Elapsed: 00:00:00.49
# Mc/sec: 1842.46
//
Query:       MMETSP1061-20121228|35865_1  [L=315]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (315 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.20
# Mc/sec: 2078.83
//
Query:       MMETSP1061-20121228|35877_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 584.52
//
Query:       MMETSP1061-20121228|35896_1  [L=150]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19    7.1  29.1       0.22    6.9  20.2    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9  20.2   5.3e-05      0.22     703     824 ..      14     129 ..       7     144 .. 0.56

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 5.3e-05
    TIGR00927 703 kltqtkkeeskdeeepaklpevtvtpapapedkgdqeedpgsqgdvaeaeakgertgeeaeaeteaegekdeesggeaeqegeseekaeeeseGeieaerkgedegegeieakeaevkGeee 824
                  ++ +++++es+d+e   k p++   p    + +gd+e+  ++q+   e e++ +++g+e ++e   +  +++  +g++++++++++  e++s Ge  +e  +ed + ++ ++++ + + ++e
  MMETSP1061-20121228|35896_1  14 TIMPDREQESSDDEGDKKPPAI-EFPNKNNDGNGDNEDGRSVQN-ETENENRDDNKGNEDKNE--DKNSNGNG-NGNNNEDDNDDDDDEDNSSGEDSGEDSDEDSDSSDSDSDS-DSDSDDE 129
                  4445556666666655555555.457777888888776666655.457788888888888877..22223322.2333333444455566666666666666666666655555.3333322 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (150 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 824.93
//
Query:       MMETSP1061-20121228|35901_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|35923_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.8    5.8   7.3       0.13    9.5   1.8    1.5  2  TIGR01840 esterase_phb: esterase, PHB depolymerase family


Domain annotation for each model (and alignments):
>> TIGR01840  esterase_phb: esterase, PHB depolymerase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.2     0.086   3.5e+02     126     131 ..       9      14 ..       3      28 .. 0.41
   2 ?    9.5   1.8   3.3e-05      0.13      99     130 ..      29      60 ..      24      70 .. 0.88

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.086
    TIGR01840 126 naglpy 131
                  +a+ + 
  MMETSP1061-20121228|35923_1   9 AAAAAT 14 
                  111111 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 3.3e-05
    TIGR01840  99 vtGLSaGggetaVllatypdvfAgaAsnaglp 130
                  +tG  a +  +aVlla + ++fA aA++a+  
  MMETSP1061-20121228|35923_1  29 ITGFAAVARFVAVLLAAAGEFFALAAAFAAVD 60 
                  9************************9999865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       245  (0.059727); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|35935_1  [L=595]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (595 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2708.05
//
Query:       MMETSP1061-20121228|35941_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1407.88
//
Query:       MMETSP1061-20121228|35961_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 346.47
//
Query:       MMETSP1061-20121228|35974_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-07   26.9   0.0    4.8e-07   26.9   0.0    1.0  1  TIGR02053 MerA: mercuric reductase
    2.8e-05   20.8   0.0    2.9e-05   20.8   0.0    1.0  1  TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase
    0.00028   18.0   0.0    0.00028   18.0   0.0    1.0  1  TIGR01421 gluta_reduc_1: glutathione-disulfide reductase
  ------ inclusion threshold ------
      0.015   11.5   0.0      0.016   11.4   0.0    1.0  1  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit


Domain annotation for each model (and alignments):
>> TIGR02053  MerA: mercuric reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   4.6e-10   4.8e-07     103     154 ..       8      60 ..       2      79 .] 0.79

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 4.6e-10
    TIGR02053 103 avdllegkakfkdektvkvdlgkevvgakrvliAtGarpavPeipGLkeae...y 154
                  +v+++ g+a+f++e+ v v+ g+++  +k ++iAtG  p+  +++GLke++   +
  MMETSP1061-20121228|35974_1   8 GVEVYIGRAVFASERSVVVN-GRTLNFKK-AVIATGGYPTLVPMEGLKELHeksF 60 
                  599*****************.88887777.9******************975550 PP

>> TIGR01350  lipoamide_DH: dihydrolipoyl dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.8   0.0   2.8e-08   2.9e-05     103     151 ..       8      53 ..       4      76 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.8 bits;  conditional E-value: 2.8e-08
    TIGR01350 103 kvevikGeaklldkkevevkkekkekkleakniiiAtGseprelplk.le 151
                  +vev+ G+a + ++++v v++++    l++k+++iAtG  p+ +p++ l+
  MMETSP1061-20121228|35974_1   8 GVEVYIGRAVFASERSVVVNGRT----LNFKKAVIATGGYPTLVPMEgLK 53 
                  89*****************9996....89*************99997633 PP

>> TIGR01421  gluta_reduc_1: glutathione-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.0   2.7e-07   0.00028     105     144 ..       8      47 ..       2      74 .. 0.84

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.7e-07
    TIGR01421 105 kvelieGyaeftkdetvevngkeytakhiliatGgkpsip 144
                   ve+  G a f+++++v vng++++ k+ +iatGg p+  
  MMETSP1061-20121228|35974_1   8 GVEVYIGRAVFASERSVVVNGRTLNFKKAVIATGGYPTLV 47 
                  689999******************************9876 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.6e-05     0.016      68     117 ..       8      53 ..       2      62 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.6e-05
    TIGR02374  68 gikllvnervikidreeksvitdagrtlsyDkLilatGsypfilPipGaD 117
                  g++++++  v      e+sv+   grtl++ k ++atG yp ++P++G  
  MMETSP1061-20121228|35974_1   8 GVEVYIGRAVFA---SERSVVV-NGRTLNFKKAVIATGGYPTLVPMEGLK 53 
                  677777777764...4455554.69*********************9964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 473.96
//
Query:       MMETSP1061-20121228|35987_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.3   0.0      0.016   12.1   0.0    1.1  1  TIGR02651 RNase_Z: ribonuclease Z
      0.025   11.8   0.0      0.032   11.4   0.0    1.1  1  TIGR03307 PhnP: phosphonate metabolism protein PhnP


Domain annotation for each model (and alignments):
>> TIGR02651  RNase_Z: ribonuclease Z
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   7.7e-06     0.016      54     109 ..       5      55 ..       2      79 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 7.7e-06
    TIGR02651  54 kIfitHlHgDHilGLpGLlstlslqerkepLtiygPkgikefiekllevsktklny 109
                   +f+tH+H DH+  L        l+e+ +p tiy P+ +  ++e   ++ ++  + 
  MMETSP1061-20121228|35987_1   5 VLFLTHTHSDHVQFLFRW-----LKEEDRPPTIYLPEASVPYVEACWKAYDEMTEC 55 
                  579********9754432.....334445889999999988888887777665555 PP

>> TIGR03307  PhnP: phosphonate metabolism protein PhnP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.6e-05     0.032      70      89 ..       6      23 ..       2      41 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.6e-05
    TIGR03307 70 illthyhmdhvqGlfplrwG 89
                 ++lth h dhvq lf  rw 
  MMETSP1061-20121228|35987_1  6 LFLTHTHSDHVQFLF--RWL 23
                 689*********988..564 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 538.96
//
Query:       MMETSP1061-20121228|36020_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-08   31.9   0.0    2.3e-08   31.8   0.0    1.0  1  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.0   5.7e-12   2.3e-08      71     116 ..      11      60 .]       4      60 .] 0.82

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 5.7e-12
    TIGR01777  71 d....krwteerkkeileSRikttealvelikka.kqkpkvlisasavgyY 116
                       + wt+++k+eil+SR  tt al+++++++ + k   l+ as+vg+Y
  MMETSP1061-20121228|36020_1  11 AplgiRPWTDSKKQEILDSRTVTTAALASALARSgN-KKCDLLVASGVGVY 60 
                  4444489***************************55.55567779****99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|36028_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 758.94
//
Query:       MMETSP1061-20121228|36053_1  [L=597]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (597 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.34
# Mc/sec: 2317.57
//
Query:       MMETSP1061-20121228|36067_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.56
# Mc/sec: 294.62
//
Query:       MMETSP1061-20121228|36071_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.5   0.5      0.019   13.1   0.1    1.4  2  TIGR01878 cas_Csa5: CRISPR type I-A/APERN-associated protein Csa5


Domain annotation for each model (and alignments):
>> TIGR01878  cas_Csa5: CRISPR type I-A/APERN-associated protein Csa5
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.1   4.6e-06     0.019       7      63 ..       2      55 ..       1      68 [. 0.78
   2 ?   -3.6   0.0       0.7   2.9e+03      83      91 ..      92     100 ..      91     101 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 4.6e-06
    TIGR01878  7 svtYvdrlgnalskeavevaLkealRalrsgiregevkyadiekegksyeavavvlk 63
                 s +++ r++n++ +e+v + L ++ R+++ +  + + +y + +++g   e +a++ +
  MMETSP1061-20121228|36071_1  2 SQQFIQRVVNYVANEIVVKGLANS-RTFQKFAVRTNQQYNELNQHGA--EKIAKTIE 55
                 56799****************975.9****99999999999999887..44443333 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.7
    TIGR01878  83 flrlvredi 91 
                  f+++vr+d+
  MMETSP1061-20121228|36071_1  92 FAKEVRKDL 100
                  788889887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       310  (0.0755729); expected 82.0 (0.02)
Passed bias filter:                      282  (0.068747); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 508.40
//
Query:       MMETSP1061-20121228|36076_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-07   26.9   0.3    1.2e-06   26.3   0.2    1.2  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
      1e-06   25.7   0.0    1.5e-06   25.1   0.0    1.3  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
      2e-06   25.5   0.5      3e-06   24.9   0.4    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.2e-05   22.5   0.5      2e-05   21.8   0.3    1.3  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    6.5e-05   19.3   1.0    8.9e-05   18.9   0.7    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    7.3e-05   20.1   0.9    0.00011   19.5   0.6    1.3  1  TIGR02415 23BDH: acetoin reductases
    0.00082   16.1   0.1     0.0012   15.6   0.0    1.2  1  TIGR01179 galE: UDP-glucose 4-epimerase
     0.0025   14.7   0.0     0.0039   14.1   0.0    1.3  1  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
     0.0081   13.4   3.3      0.079   10.1   1.7    2.2  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
     0.0098   12.9   0.1      0.013   12.5   0.1    1.2  1  TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase
  ------ inclusion threshold ------
      0.012   13.0   0.0      0.019   12.4   0.0    1.2  1  TIGR01777 yfcH: TIGR01777 family protein
      0.018   12.4   0.3       0.03   11.7   0.2    1.2  1  TIGR00036 dapB: dihydrodipicolinate reductase
      0.027   11.8   0.0      0.036   11.4   0.0    1.2  1  TIGR03649 ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.2   3.7e-09   1.2e-06       1      94 [.      40     138 ..      40     146 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 3.7e-09
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelke.agvkaaavkldvsdeeevkelveeveeelgeidilvn....nAGitrDklllr 94 
                  a++ Ga+  iGk+++++  ++g+k +   r  e+  ++  ++l       a +v++dv+d +++++++e+++++ g+i+ +++      Gi++D+ ++ 
  MMETSP1061-20121228|36076_1  40 AIIAGATGYIGKSVVRESVRQGFKTIALVRDLEKVNNNQGQALFGqFFEGAEVVECDVTDPAALTKTMEKIKADGGDIEAVISclasRSGIKKDAYAID 138
                  79*********************9999888777777777776665155668899**********************9998875222278*****99876 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   4.9e-09   1.5e-06       2      66 ..      39     111 ..      38     166 .. 0.79

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 4.9e-09
    TIGR03466   2 kvlvtGatGFvGsavvrllleeGeevrvlvrktsdrrnlee..l......dvEiveGdlkdeaslkkalkGce 66 
                  ++++ GatG++G++vvr+ +++G +  +lvr+  + +n ++  l       +E+ve d++d+a+l+k+++ ++
  MMETSP1061-20121228|36076_1  39 TAIIAGATGYIGKSVVRESVRQGFKTIALVRDLEKVNNNQGqaLfgqffeGAEVVECDVTDPAALTKTMEKIK 111
                  6899***************************988887765422334344469***************998665 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.9   0.4   9.4e-09     3e-06       1      92 [.      38     134 ..      38     147 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.9 bits;  conditional E-value: 9.4e-09
    TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvapneerakewlqek.evegfdvavvkadvssfeeakaavakveaelGpvdvlvnn....aGitrda 92 
                  + a+++G++g iG+++ ++ +++G+k +a v+  e+ +++  q+  +       vv+ dv++  + +++++k++a+ G+++ ++ +    +Gi +da
  MMETSP1061-20121228|36076_1  38 KTAIIAGATGYIGKSVVRESVRQGFKTIALVRDLEKVNNNQGQALfGQFFEGAEVVECDVTDPAALTKTMEKIKADGGDIEAVISClasrSGIKKDA 134
                  5799*************************99964444333333321222235789*************************99987633335777775 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.3   6.3e-08     2e-05       2      83 ..      38     121 ..      37     143 .. 0.86

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 6.3e-08
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvv..vndleeeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefgsldiLv 83 
                  k+a++ Ga++ ig+ + +e +++G+k +  v dle+ ++++ ++   +    ++ ++ dvt+ +++++++e+++a+ g+++ ++
  MMETSP1061-20121228|36076_1  38 KTAIIAGATGYIGKSVVRESVRQGFKTIalVRDLEKVNNNQGQALFGQFFEGAEVVECDVTDPAALTKTMEKIKADGGDIEAVI 121
                  9***********************99752367777878888888888888899999********************99988766 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9   0.7   2.8e-07   8.9e-05     408     500 ..      31     123 ..      26     162 .. 0.79

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.8e-07
    TIGR02632 408 kekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaea.vaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnn 500
                   e   a++ a+++G+++ iG+ v r  v +G   +    d e++++   ++l ++f +++   ++ dvtd  a++++++++  + G +++v++ 
  MMETSP1061-20121228|36076_1  31 SETVGAGKTAIIAGATGYIGKSVVRESVRQGFKTIALVRDLEKVNNnQGQALFGQFFEGAE-VVECDVTDPAALTKTMEKIKADGGDIEAVISC 123
                  55666899***********************998877777777654145788889988765.59*****************9999999988763 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.6   3.6e-07   0.00011       1      82 [.      38     121 ..      38     138 .. 0.91

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 3.6e-07
    TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfava..vadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlv 82 
                  k+a+++Ga+  iGk++++  ++ Gf+ +  v dl++ + ++ +  + ++   a +v+ dv+d +++ +++e+ +++ G+++ ++
  MMETSP1061-20121228|36076_1  38 KTAIIAGATGYIGKSVVRESVRQGFKTIalVRDLEKVNNNQGQALFGQFFEGAEVVECDVTDPAALTKTMEKIKADGGDIEAVI 121
                  89***********************95334789999999999999******************************999998665 PP

>> TIGR01179  galE: UDP-glucose 4-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   3.8e-06    0.0012       3      72 ..      41     113 ..      39     132 .. 0.76

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 3.8e-06
    TIGR01179   3 LvtGgaGyiGshvvrqllekgke.vvvlDnlskgskealka..lekitevklvegdladkekleavleeekid 72 
                  +++G++GyiG +vvr+  ++g++ + ++ +l k ++++ +a  ++ ++  ++ve d++d ++l++++e+ k d
  MMETSP1061-20121228|36076_1  41 IIAGATGYIGKSVVRESVRQGFKtIALVRDLEKVNNNQGQAlfGQFFEGAEVVECDVTDPAALTKTMEKIKAD 113
                  689******************995566778876666554441045556999***************9965543 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.2e-05    0.0039       2      72 ..      41     111 ..      40     136 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.2e-05
    TIGR04180   2 lvtGadGfiGshlvealvekGaevralvlynsfnswGwldevekevkkeievvlGdirdaesvkkavkgvd 72 
                  +++Ga G+iG  +v + v++G++  alv+   + +    +++  +  +  evv  d+ d++++ k++++++
  MMETSP1061-20121228|36076_1  41 IIAGATGYIGKSVVRESVRQGFKTIALVRDLEKVNNNQGQALFGQFFEGAEVVECDVTDPAALTKTMEKIK 111
                  799*************************9765555555567777899****************99998765 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   1.7   0.00025     0.079       3      76 ..      37     112 ..      36     121 .. 0.81
   2 !    8.0   0.2    0.0011      0.35      26      69 ..      88     132 ..      76     146 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00025
    TIGR03206   3 dkvaivtgggggiggaicrrfaeegak.va.vldlnaeaaekvaaairekggkaeavavditdrasvdaavaaaee 76 
                  +k+ai++g +g ig ++ r   ++g k +a v dl++   ++  a   +    ae v +d+td a++  ++  ++ 
  MMETSP1061-20121228|36076_1  37 GKTAIIAGATGYIGKSVVRESVRQGFKtIAlVRDLEKVNNNQGQALFGQFFEGAEVVECDVTDPAALTKTMEKIKA 112
                  69***********************8834435588887777877888888899**********9998887776665 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.0011
    TIGR03206  26 egakvavldlnaeaa.ekvaaairekggkaeavavditdrasvda 69 
                  ega+v   d++  aa  k  ++i++ gg+ eav   +++r+ ++ 
  MMETSP1061-20121228|36076_1  88 EGAEVVECDVTDPAAlTKTMEKIKADGGDIEAVISCLASRSGIKK 132
                  9*********99888367889******************998865 PP

>> TIGR02197  heptose_epim: ADP-glyceromanno-heptose 6-epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   4.2e-05     0.013       2      86 ..      41     136 ..      40     162 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 4.2e-05
    TIGR02197   2 ivTGgaGfiGsnlvaalnekgetdilvvDklrk..........ge..kllnlkdeeiadyidkeellerlekeelkkveavfHegAisdTteldgel 86 
                  i+ G+ G+iG  +v +  ++g + i  v +l+k          g+  + +++++++++d  + ++ +e++++ + +++eav+   A  + ++ d+  
  MMETSP1061-20121228|36076_1  41 IIAGATGYIGKSVVRESVRQGFKTIALVRDLEKvnnnqgqalfGQffEGAEVVECDVTDPAALTKTMEKIKA-DGGDIEAVISCLASRSGIKKDAYA 136
                  89******************************9999998777755556667888888888888888888887.579999999888877777777654 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0     6e-05     0.019       2      41 ..      41      80 ..      40      98 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 6e-05
    TIGR01777  2 litGgtGliGralveelekkghevviltrskekekeekke 41
                 +i+G+tG iG+++v+e  ++g + ++l+r+ ek ++++ +
  MMETSP1061-20121228|36076_1 41 IIAGATGYIGKSVVRESVRQGFKTIALVRDLEKVNNNQGQ 80
                 79****************************9988887744 PP

>> TIGR00036  dapB: dihydrodipicolinate reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.2   9.6e-05      0.03       6      72 ..      42     111 ..      39     120 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 9.6e-05
    TIGR00036   6 vaGaaGrmGrevikavkea..edlelvaalerkgsskqgkDiGela.gigkvgvpveddleavkvlaekk 72 
                  +aGa+G +G+ v+++  ++  + ++lv  le+ ++++ +   G++  g+  v+ +v+d   ++k++ + k
  MMETSP1061-20121228|36076_1  42 IAGATGYIGKSVVRESVRQgfKTIALVRDLEKVNNNQGQALFGQFFeGAEVVECDVTDPAALTKTMEKIK 111
                  89***********9977766899********777766666789975266778999999888777766555 PP

>> TIGR03649  ergot_EASG: ergot alkaloid biosynthesis protein, AFUA_2G17970 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00012     0.036      85     200 ..     140     260 ..      90     272 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00012
    TIGR03649  85 sllikFidvavkkgvkrfvllsasaiekGgpalgkvhaylkel.....eeveyavLRptWfmenfeeelhveaikeenklysAtsdgki...PfvsaeDiArvAvkaLtdksaknteylvlGpe 200
                  +++++ +d  +  g ++fvllsa   ++   +  + +  l+       ++++++++Rpt f + ++ +l+v  ++ ++  +   +dgk+     ++ +D+A   v ++td+s  n++  + Gp+
  MMETSP1061-20121228|36076_1 140 QATKNCLDSGIVTGARHFVLLSAFCCKNPWLQFQQAKLKLEADlvanqDKITHTIVRPTAFFKSVSGQLEV--VQ-QGAPFVMFGDGKVtrcNPIAEADLATYLVDSITDESRLNKNIDLGGPD 260
                  5667788999999**********99998855555555444433455569************9999877655..43.444555677777722235888999999999999999999888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 1730.00
//
Query:       MMETSP1061-20121228|36088_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-20   72.2  17.0    1.6e-20   71.7  11.8    1.3  1  TIGR00817 tpt: Tpt phosphate/phosphoenolpyruvate translocator
  ------ inclusion threshold ------
      0.022   12.0  19.8      0.011   13.0   3.3    2.2  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter
        1.4    6.3  17.2        4.1    4.9  11.9    1.8  1  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00817  tpt: Tpt phosphate/phosphoenolpyruvate translocator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.7  11.8   1.2e-23   1.6e-20      65     299 ..      58     288 ..       4     292 .. 0.86

  Alignments for each domain:
  == domain 1    score: 71.7 bits;  conditional E-value: 1.2e-23
    TIGR00817  65 lklllpvaivhtighvtsnvslskvavSfthtikalepifsvvlskfflgrefpltlylsLlpivlGvalasltelsfnllgflsamisniefvarnifsKkiltkk.sldklnlyalisililfllspiafiveglklltreflqaiskvnvlklvtvslvaalgifHlyq.qvafqllervspltysvgNvlKRvvvIvvSilffetkisflqvlGvilaiaGvflYskvkakkk 299
                   + +    iv  ++    nvsl  v+v f  ++++l p++++++  ++ gr+f+    ls+ piv+Gva+a   ++sf+ +gfl  +i+ ++   +   + ++lt    l  + l   ++ l+++ ++ i+f++ +++ +    lq   ++ ++ + + ++v+++gif +     + +  ++ splt  ++  +K v +Iv S ++f t i++++++G+i+ ++G  +Ys +  + +
  MMETSP1061-20121228|36088_1  58 TMHIRLFSIVFSLNIAIGNVSLRHVSVNFNQVMRSLVPVVTILM-GIIVGRKFTWRRILSVGPIVVGVAMACYGDMSFSKIGFLYTIICVVIAAVKVTAAGEMLTGPlKLHPVDLLCHLAPLAMIQCISISFATGEVHSI----LQR-PELYLTDIRPMAVVLLSGIFSFSLnITSLMANKLTSPLTLTIAGNVKQVLMIVLSTIMFSTTITPMNGIGIIVVLIGSTIYSVISIQER 288
                  44444455666666677899********************9976.577778***99999**********************************99999999999965778888888888878888888888888776544....455.78999999999*********997637788888899***********************************************9988754 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   3.3     8e-06     0.011      66     147 ..      77     156 ..      45     176 .. 0.83
   2 ?    5.6   4.2    0.0014         2      47     117 ..     210     280 ..     196     290 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 8e-06
    TIGR00950  66 lavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdgnlsislaGlllgllsgisfAlgtvla 147
                  ++   ++v +  ++ +l+P+ ++l+  +++ ++++++ +l++   ++G+++   +g +s+s +G+l  ++  + +A+  + a
  MMETSP1061-20121228|36088_1  77 VSLRHVSVNFNQVMRSLVPVVTILMGIIVG-RKFTWRRILSVGPIVVGVAMA-CYGDMSFSKIGFLYTIICVVIAAVKVTAA 156
                  56677999999*******************.*****************6665.56899*******99999888777665544 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.0014
    TIGR00950  47 lrllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivll 117
                    ++ll+ ++ +  + + ++a k ++  ++++++ +  +++++ls +++  +++    ++++++l+G  ++
  MMETSP1061-20121228|36088_1 210 MAVVLLSGIFSFSLNITSLMANKLTSPLTLTIAGNVKQVLMIVLSTIMFSTTITPMNGIGIIVVLIGSTIY 280
                  5678999999999999*****99999999**************************************8876 PP

>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9  11.9     0.003       4.1      18     222 .]      77     280 ..      63     280 .. 0.70

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.003
    TIGR00803  18 valgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivqlvqssaktlsegnlvvglsavlsallssglagvy..fekilkdkdtsfyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                  v l  + ++  qv  +l+ + t+lm + ++ +++  ++ +s++ +++gva++     s   +s+ +++  +++v++a +    ag      + l+  d +   + l++  +  ++ + +++ s  ++       i   + v ++++ +    + + + +k+++++t+ i++ ++ +l+++ls ++f   ++ +  +g+i+v ++  +Y
  MMETSP1061-20121228|36088_1  77 VSLRHVSVNFNQVMrSLVPVVTILMGI-IVGRKFTWRRILSVGPIVVGVAMACYGDMS---FSKIGFLYTIICVVIAAVKVTAAGEMltGPLKLHPVDLLCHLAPLAMIQCISISFATGEVHSILQRPELYLTDIRPMAVVLLSGIFSFSLNITSLMANKLTSPLTLTIAGNVKQVLMIVLSTIMFSTTITPMNGIGIIVVLIGSTIY 280
                  555666666666666777777777655.455666666666777777766666666665...7777777777777777665555554400445566666666666677777777776666666666666666666666677777888888888889999**********************************************9998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       253  (0.0616772); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1365.26
//
Query:       MMETSP1061-20121228|36091_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 725.94
//
Query:       MMETSP1061-20121228|36092_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 341.97
//
Query:       MMETSP1061-20121228|36099_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|36098_1  [L=306]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (306 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1553.41
//
Query:       MMETSP1061-20121228|36109_1  [L=194]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (194 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.28
# Mc/sec: 882.96
//
Query:       MMETSP1061-20121228|36103_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-29   99.4   9.9    4.3e-29   99.4   6.8    2.4  2  TIGR00659 TIGR00659: TIGR00659 family protein


Domain annotation for each model (and alignments):
>> TIGR00659  TIGR00659: TIGR00659 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.2     0.029   1.2e+02      34      79 ..     103     142 ..      90     216 .. 0.60
   2 !   99.4   6.8   1.1e-32   4.3e-29      58     218 ..     348     508 ..     342     517 .. 0.91

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.029
    TIGR00659  34 lltvlvlvalLllvkisYesYmkgaevlndlLqpavvalaiPLYkq 79 
                  + t +++  l ++ +is+ s ++g    +         la+P +++
  MMETSP1061-20121228|36103_1 103 VFTDMIIKNLFKAKGISFPSSLAGCCFTAA------TLLALPFHEK 142
                  456677777777777777777666543322......2244444333 PP

  == domain 2    score: 99.4 bits;  conditional E-value: 1.1e-32
    TIGR00659  58 aevlndlLqpavvalaiPLYkqlkvikkyakeiiltvvvgsvvailsgtllalllgaa.pelvasllPksvttpiamevsekigGiPavtavlviltgllGavfgplllkklrvkdkvarGlalGtsshalGtariieldelaGavsslslvLagiitslia 218
                  ++ l+++L+pavv+l + +Y++   ik++ ke++++ +v+ v  ++ ++ ++++ g+a +el  s+lP+ +t ++a++++e +g    ++  + i+tgl+Ga fg  ll+++++kd v rGl++G+++h+lGta  +++ + a  ++++s++L++i  +l++
  MMETSP1061-20121228|36103_1 348 GDFLTFVLGPAVVSLGVSIYERRVLIKQNLKEVLTATFVSCVGGLFGTAAVVRIFGLAsAELRLSMLPRNITSALAVAIAEIVGANKSLAVAIAIVTGLIGANFGASLLDLFGIKDPVTRGLGIGSAAHGLGTAAFVDE-KDAFPFAAISMALTAICGTLLV 508
                  5689*******************************************99999999865167777*********************99999999****************************************987765.56789***********987764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 2103.83
//
Query:       MMETSP1061-20121228|36133_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 580.75
//
Query:       MMETSP1061-20121228|36161_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 377.97
//
Query:       MMETSP1061-20121228|36181_1  [L=802]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (802 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.16s 00:00:00.55 Elapsed: 00:00:00.36
# Mc/sec: 2940.42
//
Query:       MMETSP1061-20121228|36196_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 640.15
//
Query:       MMETSP1061-20121228|36194_1  [L=1028]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.44u 0.15s 00:00:00.59 Elapsed: 00:00:00.37
# Mc/sec: 3667.16
//
Query:       MMETSP1061-20121228|36205_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.8   0.0      0.045   12.1   0.0    1.4  1  TIGR03995 target_X_rSAM: putative rSAM target protein, CGCGG family


Domain annotation for each model (and alignments):
>> TIGR03995  target_X_rSAM: putative rSAM target protein, CGCGG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.1e-05     0.045      45      78 ..      46      79 ..      26      82 .. 0.90

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.1e-05
    TIGR03995 45 gefGnPeeylydaleekfgesidveyvdqCGCGG 78
                  ++G+ +e++ + ++++ +e++  e +++C C G
  MMETSP1061-20121228|36205_1 46 CQHGRVNEFVLQSIKQASSEALFRELMEECRCTG 79
                 58******************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 809.93
//
Query:       MMETSP1061-20121228|36214_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       230  (0.0560702); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 359.97
//
Query:       MMETSP1061-20121228|36230_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1612.56
//
Query:       MMETSP1061-20121228|36279_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-08   31.7   0.0    2.4e-08   31.1   0.0    1.3  1  TIGR02024 FtcD: glutamate formiminotransferase


Domain annotation for each model (and alignments):
>> TIGR02024  FtcD: glutamate formiminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.1   0.0   5.8e-12   2.4e-08      81     240 ..      54     206 ..      23     234 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.1 bits;  conditional E-value: 5.8e-12
    TIGR02024  81 ehPrmGavdviPfvPvkdvtveecv.elakelGkrlgeelgvPvylyeeaaekeerktlaairkgeyealkeklkeakWkPdfGPsevnpkaGatavGark.fliafnvnldts.nleiakkiakavrek.ggGlklvkaigleleeknlvqvsinlvnyekta 240
                   hP +G vd + ++P++d t       +a+e+G+ +   +g  v +y++a  +++ k+laa+r++    +      ++ +P   P   + +aG   vGa   f+  fn+ l+ +  +++a+ ++++vre+ g+Gl  v+a++l+    ++  v+ nl++  +t+
  MMETSP1061-20121228|36279_1  54 RHPTVGLVDHVSVLPLEDKTAGSITgSVAREIGEIMK-TMGADVLYYGNA--HPSGKELAAVRRESTRFFDT----SSANP---PVAATNTAGQVTVGAPPrFVENFNIRLQPRvPKKMARTLTESVRERsGRGLPHVEALTLKYG-PDQYEVACNLLDPTVTS 206
                  6*****************9987754389*****8777.9********998..5899*******987655543....33344...77778899*******7515568*****97626899*********962579********9975.57789999999988887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1301.04
//
Query:       MMETSP1061-20121228|36301_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|36297_1  [L=786]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-32  108.1   0.1    2.7e-20   70.9   0.0    2.9  2  TIGR02250 FCP1_euk: FCP1-like phosphatase, phosphatase domain
    5.9e-14   50.0   1.2    1.1e-13   49.2   0.1    1.9  2  TIGR02251 HIF-SF_euk: dullard-like phosphatase domain


Domain annotation for each model (and alignments):
>> TIGR02250  FCP1_euk: FCP1-like phosphatase, phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.9   0.0   1.3e-23   2.7e-20       2      95 ..     277     386 ..     276     389 .. 0.90
   2 !   33.9   0.0   3.2e-12   6.7e-09      96     145 ..     500     551 ..     487     555 .. 0.89

  Alignments for each domain:
  == domain 1    score: 70.9 bits;  conditional E-value: 1.3e-23
    TIGR02250   2 lrekkLvLvlDlDqtlihttkeselseeekkkkeekeseklkdlkkfklee................kleylvklRPfvkeflkkvsklyelhvytmgtraYakeiakll 95 
                  + +k+L+LvlDlD+tl+h+t++    +  + ++e ++  +++ ++   +e+                  +++vklRP+vkefl+ v+++ye+ vyt gtr+Ya+eia +l
  MMETSP1061-20121228|36297_1 277 FGQKRLSLVLDLDHTLVHATSDGRAIKYVTSDPEAQHYGDVRTISLPIFEGadsatkkgmdprhvhlRSQHYVKLRPYVKEFLEGVQDMYEVSVYTAGTRQYAEEIAMVL 386
                  679******************9999888887888888888887777666668899***********9899************************************9876 PP

  == domain 2    score: 33.9 bits;  conditional E-value: 3.2e-12
    TIGR02250  96 DPekklFgdrilsrdest..saktKsLkkllpadesavviiDdredvWkksk 145
                  D  +++Fg+ri+sr + +   +++KsLk+++p+  ++  ++DdredvW ++k
  MMETSP1061-20121228|36297_1 500 DLRQRVFGSRIVSRTDVGdlGRDVKSLKRIFPCGGTMTAVVDDREDVWANAK 551
                  567899**********87446899************************9988 PP

>> TIGR02251  HIF-SF_euk: dullard-like phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.2   0.1   5.2e-17   1.1e-13       2      79 ..     282     386 ..     281     391 .. 0.74
   2 ?   -3.5   0.0      0.79   1.6e+03      85     109 ..     612     636 ..     607     641 .. 0.71

  Alignments for each domain:
  == domain 1    score: 49.2 bits;  conditional E-value: 5.2e-17
    TIGR02251   2 ktlvLDLDeTLvhs.........slkkakaieadlklevliek.........................kiilvyVlkRPyvdeFlerlsklyelvvfTasleeYadkvldil 79 
                   +lvLDLD TLvh+                 + d + +   +                             + yV+ RPyv+eFle ++++ye+ v+Ta++++Ya++++ +l
  MMETSP1061-20121228|36297_1 282 LSLVLDLDHTLVHAtsdgraikyV-------TSDPEAQHYGDVrtislpifegadsatkkgmdprhvhLRSQHYVKLRPYVKEFLEGVQDMYEVSVYTAGTRQYAEEIAMVL 386
                  68************7755444331.......222222222111334455566789999999999988767789*********************************997655 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 0.79
    TIGR02251  85 vlsrrlyRescvetngkyvKdlslv 109
                   l+rr+y +s   +++++ + l+ +
  MMETSP1061-20121228|36297_1 612 NLHRRYYHQSSEGNRKTVPQTLREM 636
                  68999**999877776666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (786 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.32
# Mc/sec: 3241.98
//
Query:       MMETSP1061-20121228|36317_1  [L=339]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.02   12.5   0.0      0.036   11.7   0.0    1.3  1  TIGR02466 TIGR02466: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR02466  TIGR02466: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.8e-06     0.036     130     196 ..     244     311 ..     240     315 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.8e-06
    TIGR02466 130 nasaikledprldslmaapkakknakraverfvkvkPqegrvllfe.swLrHeVtpneseeeRisvSf 196
                  +++++++  p +d+ +  + +  +   +   ++ ++ + g+v+ +  s  +H V+pn se++R+s+ f
  MMETSP1061-20121228|36317_1 244 QNGELNMWVPLTDRTLTGVDLWSETTFEEGDYHPIAANIGEVISWHgSSRKHYVNPNASENTRVSLDF 311
                  5677778888899999999999999999999**9**9******99747788**************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (339 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.31
# Mc/sec: 1443.36
//
Query:       MMETSP1061-20121228|36332_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.33
# Mc/sec: 299.98
//
Query:       MMETSP1061-20121228|36345_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.61
# Mc/sec: 114.68
//
Query:       MMETSP1061-20121228|36333_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-18   64.9   0.2    1.5e-18   64.5   0.1    1.1  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
    7.3e-06   22.6   0.0    1.4e-05   21.7   0.0    1.4  1  TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit
      0.001   15.3   0.0     0.0015   14.8   0.0    1.2  1  TIGR00232 tktlase_bact: transketolase


Domain annotation for each model (and alignments):
>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.5   0.1   1.1e-21   1.5e-18     344     574 ..      80     323 ..      36     339 .. 0.81

  Alignments for each domain:
  == domain 1    score: 64.5 bits;  conditional E-value: 1.1e-21
    TIGR00204 344 dklskkfP.kryfdvaiaeqhavtlaaalaieGlkPvvaiys.tflqraydqvvhdvaiq......klpvllaidr.aGivGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrGnavgveltee.....ekleiGksellrkgedilllgfGtlveealevaeelkekgieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsdqnv 574
                  ++l +k+  kr++d  i+e     +a + a++ l+Pvv   +  f  +a d++v  +a q      +lpv +      G      + h   +  +++ +iP l ++ P   +++k +++ a++  +  + l +    +v  ++ +e       +eiGk+++ r+g d+ ++++ + v + le+aeel  kgi+a v++l  ++P+d e i + +k++ + v +e++  + Gvg+ +a ++++ ++
  MMETSP1061-20121228|36333_1  80 KGLYQKYGeKRVIDTPITEAGFTGMAIGSALHDLRPVVEFMTiNFSMQAIDHIVNSAAKQyymsggDLPVPIVFRGpNGYSAGTAAQHAQCY-AAWFGAIPGLKVVSPYSSEDAKGLIKAAIRDPNPVMVLEHELMYGVSFPMSDEaqskdFVIEIGKAKIEREGSDVTIISYSKEVGKCLEAAEELAAKGISAEVINLLSIRPFDRETIFNSIKKTGRCVSVEQGFPQHGVGAEIAAMIMETDT 323
                  4577888527899*************************987636999**********99855554457887766431444444444455555.6999************************9998888888888877777777665443233589*************************************************************************************99875 PP

>> TIGR03710  OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0     1e-08   1.4e-05     458     523 ..     239     304 ..     225     318 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1e-08
    TIGR03710 458 vegdedadvlvigwGstkgaikeaverlreeglkvallhlrllnPlpke.laellekakkvvvvEqN 523
                  + + e +dv++i++    g++ ea+e+l ++g+++++++l  + P+ +e + + ++k  + v vEq 
  MMETSP1061-20121228|36333_1 239 I-EREGSDVTIISYSKEVGKCLEAAEELAAKGISAEVINLLSIRPFDREtIFNSIKKTGRCVSVEQG 304
                  3.44789**********************************************************95 PP

>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   1.1e-06    0.0015     475     582 ..     174     285 ..     159     305 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 1.1e-06
    TIGR00232 475 slRaipnlsvwRPaDeketaaayklalesqdaptvlilsRq.....nlpqle.esslekvlkGgYvlkdsknPdiiliatGsevelaveaakkLakenikvrvvslpsidlldk 582
                   + aip l+v+ P   +++   +k a++  +   v++l        ++p  +  +s++ v   g    ++++ d+++i+   ev  ++eaa++La+++i + v+ l si+ +d+
  MMETSP1061-20121228|36333_1 174 WFGAIPGLKVVSPYSSEDAKGLIKAAIRDPN--PVMVLEHElmygvSFPMSDeAQSKDFVIEIGKAKIEREGSDVTIISYSKEVGKCLEAAEELAAKGISAEVINLLSIRPFDR 285
                  5668888888888888887777888887433..345555441111144555523444556777788889999***********************************9999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.42
# Mc/sec: 1169.05
//
Query:       MMETSP1061-20121228|36361_1  [L=279]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (279 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 1363.89
//
Query:       MMETSP1061-20121228|36411_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-08   30.5   0.0    4.6e-05   20.9   0.0    2.4  2  TIGR01262 maiA: maleylacetoacetate isomerase
    0.00066   17.3   0.0     0.0014   16.3   0.0    1.4  1  TIGR00862 O-ClC: intracellular chloride channel protein
    0.00072   17.8   0.1     0.0015   16.8   0.0    1.5  1  TIGR02200 GlrX_actino: glutaredoxin-like protein
     0.0011   17.0   0.0     0.0026   15.8   0.0    1.6  1  TIGR02180 GRX_euk: glutaredoxin
     0.0014   17.0   0.0     0.0029   16.0   0.0    1.6  1  TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.6e-08   4.6e-05       4      94 ..     157     250 ..     155     255 .. 0.81
   2 !    6.9   0.0    0.0011      0.92     130     171 ..     271     312 ..     266     321 .. 0.85

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 5.6e-08
    TIGR01262   4 syfrSsasy.....RvRiaLaLkgidyesvpvnLlkdGeqkkeefkalNPqelvPtLkidegevltqSlAiieyLeetypepaLlpkdpakrarvr 94 
                  +++r sas+     +v ++L+ k+i y+++ +n++  G +k + f +l P +++P+ +id g+v  qS  i++ Le + + +  l+  ++ ra+++
  MMETSP1061-20121228|36411_1 157 TFYRDSASWcpycqKVWLTLEAKQIPYKVEKINMRCYG-DKPASFLKLQPGGQIPVAIID-GRVYGQSNDILMALEGHPQSKLSLSPPANLRAEAQ 250
                  6899999986666679999*****************75.56789****************.6*************876544444555555566655 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.0011
    TIGR01262 130 wlkhwiekGlaalEellkekagafcvGdevtladvcLvpqvy 171
                  w k+   + l+ ++++l+++ g f+ G++ +l+dv ++p + 
  MMETSP1061-20121228|36411_1 271 WGKDQFIDTLEYVDSVLQKADGPFFLGKKFSLVDVQFAPFLE 312
                  656555667888999*********************999875 PP

>> TIGR00862  O-ClC: intracellular chloride channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   1.7e-06    0.0014      15      80 ..     162     230 ..     155     252 .. 0.86

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 1.7e-06
    TIGR00862  15 signcpfsqrlfmilwlkgvvfnvttvdlk...rkpeelknlapgtkppflvynkevktdvnkieefle 80 
                  s   cp++q++++ l  k + ++v  ++++    kp+++ +l pg++ p  + ++ v  + n i   le
  MMETSP1061-20121228|36411_1 162 SASWCPYCQKVWLTLEAKQIPYKVEKINMRcygDKPASFLKLQPGGQIPVAIIDGRVYGQSNDILMALE 230
                  5567************************9844459*******************999999998877666 PP

>> TIGR02200  GlrX_actino: glutaredoxin-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.8e-06    0.0015       6      33 ..     162     189 ..     155     211 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.8e-06
    TIGR02200   6 atswCgyCaslkrtLdkdgaeYevvdie 33 
                   +swC+yC+++  tL+ + ++Y+v  i+
  MMETSP1061-20121228|36411_1 162 SASWCPYCQKVWLTLEAKQIPYKVEKIN 189
                  479*******************998886 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.2e-06    0.0026       6      72 ..     163     226 ..     157     236 .. 0.88

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.2e-06
    TIGR02180   6 KsyCpYckkakelLkklkvkkalevveldklengselqdyLkeltgqrtVPrifingkfiGGsddlk 72 
                   s+CpYc+k+  +L+ +++   ++v  ++    g++  + Lk   g   +P   i g+ +G s+d+ 
  MMETSP1061-20121228|36411_1 163 ASWCPYCQKVWLTLEAKQIP--YKVEKINMRCYGDKPASFLKLQPGG-QIPVAIIDGRVYGQSNDIL 226
                  689************99999..9******999999999988877765.5999999999999999875 PP

>> TIGR02196  GlrX_YruB: glutaredoxin-like protein, YruB-family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   3.5e-06    0.0029       6      63 ..     162     220 ..     155     229 .. 0.73

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 3.5e-06
    TIGR02196   6 ttpwCppCkkakeyLkskgiafe..eidvekdsaaaeellkklgqrsvPvivigekivvG 63 
                  +  wCp+C+k+   L++k i+++  +i+++      +  lk +    +Pv++i+++ v G
  MMETSP1061-20121228|36411_1 162 SASWCPYCQKVWLTLEAKQIPYKveKINMRCYGDKPASFLKLQPGGQIPVAIIDGR-VYG 220
                  578*******************7225666655666667777777777888888877.445 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.38
# Mc/sec: 1934.68
//
Query:       MMETSP1061-20121228|36481_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.32
# Mc/sec: 235.11
//
Query:       MMETSP1061-20121228|36498_1  [L=231]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (231 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       175  (0.0426621); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.37
# Mc/sec: 824.04
//
Query:       MMETSP1061-20121228|36495_1  [L=287]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (287 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1646.99
//
Query:       MMETSP1061-20121228|36515_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 305.97
//
Query:       MMETSP1061-20121228|36518_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       288  (0.0702097); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|36542_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|36567_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1624.04
//
Query:       MMETSP1061-20121228|36593_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0075   14.0   0.1     0.0081   13.9   0.0    1.1  1  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0     2e-06    0.0081     156     188 ..      44      75 ..      26      78 .] 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2e-06
    TIGR03296 156 gdytiqpedagvgVlaHElGHdlglPDlYdtsy 188
                    y+    ++ v Vl HE+GH+l l +  dt++
  MMETSP1061-20121228|36593_1  44 SYYNDRFCSS-VSVLMHEVGHNLNLAHSGDTNN 75 
                  4444444444.9*************99888865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 355.01
//
Query:       MMETSP1061-20121228|36598_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|36664_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 620.35
//
Query:       MMETSP1061-20121228|36668_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 574.15
//
Query:       MMETSP1061-20121228|36673_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 491.29
//
Query:       MMETSP1061-20121228|36693_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 425.30
//
Query:       MMETSP1061-20121228|36694_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|36703_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 379.47
//
Query:       MMETSP1061-20121228|36702_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 950.32
//
Query:       MMETSP1061-20121228|36706_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   12.1   1.9      0.054   11.5   1.3    1.4  1  TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR01727  oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   1.3   1.3e-05     0.054      42      74 ..      68      98 ..      34     113 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 1.3e-05
    TIGR01727 42 GevpslinlpsgCvFaeRCpvakeeCkkeepel 74
                   vp+  n    C+ ++RC+ +k++C+ ++p  
  MMETSP1061-20121228|36706_1 68 APVPK-KNAVALCASCDRCRARKTKCDGKRP-C 98
                 33444.344558****************999.3 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1379.29
//
Query:       MMETSP1061-20121228|36731_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1225.61
//
Query:       MMETSP1061-20121228|36734_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 479.33
//
Query:       MMETSP1061-20121228|36739_1  [L=33]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (33 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.13s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 241.98
//
Query:       MMETSP1061-20121228|36762_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 1109.91
//
Query:       MMETSP1061-20121228|36772_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 474.18
//
Query:       MMETSP1061-20121228|36779_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.09s 00:00:00.18 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|36787_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.39
# Mc/sec: 747.94
//
Query:       MMETSP1061-20121228|36790_1  [L=804]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (804 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 3789.97
//
Query:       MMETSP1061-20121228|36812_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-09   33.7   0.0    5.6e-09   33.5   0.0    1.1  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.6e-07   28.8   0.0    1.6e-07   28.8   0.0    1.1  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.2e-06   26.1   0.0    1.2e-06   26.0   0.0    1.3  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.2e-06   26.1   0.0    1.8e-06   25.4   0.0    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.6e-06   25.4   0.1    1.6e-06   25.4   0.1    1.3  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.8e-06   25.0   0.0    3.9e-06   24.5   0.0    1.2  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    5.5e-06   23.8   0.0    7.2e-06   23.4   0.0    1.2  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    5.7e-06   23.6   0.0    7.2e-06   23.2   0.0    1.2  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    9.6e-06   22.7   0.0    1.2e-05   22.4   0.0    1.2  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    9.7e-06   22.2   0.0    1.2e-05   21.9   0.0    1.1  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    9.9e-06   22.6   0.1    9.9e-06   22.6   0.0    1.1  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    1.3e-05   22.2   0.0    1.4e-05   22.1   0.0    1.1  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    1.6e-05   22.6   0.0    1.9e-05   22.3   0.0    1.1  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.3e-05   21.8   0.0      3e-05   21.4   0.0    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      3e-05   20.2   0.0    3.7e-05   19.9   0.0    1.1  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    3.2e-05   21.2   0.0    3.4e-05   21.1   0.0    1.1  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    3.5e-05   19.7   1.4      8e-05   18.5   0.0    1.8  2  TIGR00618 sbcc: exonuclease SbcC
    4.8e-05   20.6   0.0      7e-05   20.1   0.0    1.2  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    5.7e-05   20.6   0.0    6.6e-05   20.4   0.0    1.1  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      7e-05   20.2   0.0    9.4e-05   19.8   0.0    1.2  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    8.2e-05   19.7   0.1    0.00012   19.2   0.0    1.3  2  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    8.9e-05   19.9   0.1    0.00012   19.5   0.1    1.1  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    9.7e-05   19.7   0.0    9.7e-05   19.7   0.0    1.1  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
     0.0001   20.0   0.0    0.00013   19.6   0.0    1.2  1  TIGR00960 3a0501s02: type II secretory pathway family protein
     0.0001   19.8   0.0    0.00013   19.4   0.0    1.1  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
     0.0002   18.8   0.0     0.0002   18.8   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    0.00021   17.9   0.4    0.00027   17.5   0.1    1.3  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    0.00021   18.2   0.0    0.00026   17.9   0.0    1.1  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    0.00025   17.6   0.0    0.00025   17.6   0.0    1.2  1  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    0.00028   17.3   0.0    0.00032   17.1   0.0    1.0  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    0.00031   16.9   0.0    0.00037   16.7   0.0    1.1  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    0.00035   16.8   0.0    0.00042   16.5   0.0    1.0  1  TIGR00958 3a01208: antigen peptide transporter 2
    0.00046   16.7   0.0    0.00046   16.7   0.0    1.3  1  TIGR00955 3a01204: pigment precursor permease
    0.00046   17.5   0.0    0.00067   17.0   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    0.00085   16.6   0.0     0.0011   16.2   0.0    1.1  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    0.00089   15.4   0.1     0.0011   15.2   0.0    1.1  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
     0.0011   15.6   0.0     0.0013   15.3   0.0    1.1  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
     0.0018   14.7   0.0     0.0022   14.4   0.0    1.1  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
     0.0018   15.1   0.0     0.0025   14.7   0.0    1.2  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
     0.0024   14.3   0.0      0.003   14.0   0.0    1.1  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
     0.0048   13.3   0.0     0.0054   13.1   0.0    1.1  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
     0.0055   14.0   0.0     0.0055   14.0   0.0    1.2  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
     0.0062   12.9   0.0     0.0083   12.5   0.0    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
  ------ inclusion threshold ------
      0.011   13.1   0.0      0.014   12.9   0.0    1.2  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      0.018   11.9   0.0      0.021   11.7   0.0    1.1  1  TIGR01288 nodI: nodulation ABC transporter NodI
      0.024   10.6   0.0      0.026   10.5   0.0    1.1  1  TIGR00630 uvra: excinuclease ABC subunit A
       0.04   11.4   0.0       0.04   11.4   0.0    1.2  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
      0.041   11.4   0.0      0.051   11.1   0.0    1.3  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
      0.045   11.3   0.2      0.057   10.9   0.2    1.5  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA


Domain annotation for each model (and alignments):
>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   6.6e-11   5.6e-09     132     165 ..      52      85 .]      44      85 .] 0.93

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 6.6e-11
    TIGR03873 132 drdlstlsGGerqrvhlaralaqePklllldePt 165
                  d+ + tlsGGe+qr  la ala +P +lllde t
  MMETSP1061-20121228|36812_1  52 DQPWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  67799***************************87 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   1.9e-09   1.6e-07     129     172 ..      42      85 .]       8      85 .] 0.84

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 1.9e-09
    TIGR00972 129 alwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePt 172
                  + w+   d  ++   +LsGG  qr ++a ala++P vlLlDe t
  MMETSP1061-20121228|36812_1  42 SEWNLGPDAFDQPWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  556666788889999***************************76 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.0   1.4e-08   1.2e-06     135     177 ..      42      84 ..       7      85 .] 0.92

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 1.4e-08
    TIGR02769 135 elvelrsevldklPrqlsGGqlqriniaralavePklivldea 177
                  ++ +l ++  d+  r lsGG  qr+++a ala++P +++lde+
  MMETSP1061-20121228|36812_1  42 SEWNLGPDAFDQPWRTLSGGESQRASLAIALALQPGVLLLDES 84 
                  56788999999999****************************8 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   2.2e-08   1.8e-06     130     156 ..      57      83 ..      49      85 .] 0.91

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 2.2e-08
    TIGR00968 130 qlsGGqrqrvalaralavepqvlllde 156
                   lsGG+ qr +la ala++p vlllde
  MMETSP1061-20121228|36812_1  57 TLSGGESQRASLAIALALQPGVLLLDE 83 
                  69************************9 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.1   1.9e-08   1.6e-06     134     160 ..      57      83 ..      49      85 .] 0.94

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 1.9e-08
    TIGR03265 134 qlsGGqqqrvaLaralalsPglLLLDe 160
                   lsGG  qr +La alal+Pg+LLLDe
  MMETSP1061-20121228|36812_1  57 TLSGGESQRASLAIALALQPGVLLLDE 83 
                  59************************9 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   0.0   4.7e-08   3.9e-06     133     165 ..      53      85 .]      38      85 .] 0.86

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 4.7e-08
    TIGR02673 133 alpeelsgGeqqRvaiaRaivnkPelllaDePt 165
                  +  ++lsgGe qR ++a a+  +P +ll De t
  MMETSP1061-20121228|36812_1  53 QPWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  44578**************************87 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   8.6e-08   7.2e-06     122     155 ..      52      85 .]      45      85 .] 0.93

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 8.6e-08
    TIGR01166 122 erpthllsgGekkrvaiagavalrpdvllldePt 155
                  ++p ++lsgGe +r ++a a+al+p vlllde t
  MMETSP1061-20121228|36812_1  52 DQPWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  68999***************************86 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   8.7e-08   7.2e-06     145     174 ..      56      85 .]      46      85 .] 0.90

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 8.7e-08
    TIGR03005 145 aqlsGGqkqrvaiaralalrpkvllfdevt 174
                    lsGG+ qr ++a alal+p vll+de t
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  469*************************87 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   1.5e-07   1.2e-05      99     127 ..      56      84 ..      39      85 .] 0.90

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 1.5e-07
    TIGR01187  99 sqlsGGqrqrvalaravvkkPkiLLlDep 127
                    lsGG  qr +la a++ +P +LLlDe+
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDES 84 
                  579*************************8 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   1.4e-07   1.2e-05     587     616 ..      56      85 .]      51      85 .] 0.95

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.4e-07
    TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEAT 616
                   tlSGG  QR  +A al+ +P +ll+DE T
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  69**************************98 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.2e-07   9.9e-06     457     486 ..      56      85 .]      15      85 .] 0.90

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.2e-07
    TIGR02857 457 agLSgGqrqRlaLArallrdapllllDEPt 486
                  + LSgG+ qR +LA al+ +  +lllDE t
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  78**************************76 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.0   1.7e-07   1.4e-05     137     164 ..      56      83 ..      38      85 .] 0.86

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.7e-07
    TIGR03258 137 aqlsGGqqqrvalaralvvrpdvlllde 164
                    lsGG  qr +la al+++p vlllde
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDE 83 
                  579************************9 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   2.3e-07   1.9e-05     108     139 ..      52      83 ..      42      85 .] 0.91

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 2.3e-07
    TIGR03771 108 drpvGelsGGqrqrvlvaralavkpsllllde 139
                  d+p   lsGG+ qr  +a ala++p +lllde
  MMETSP1061-20121228|36812_1  52 DQPWRTLSGGESQRASLAIALALQPGVLLLDE 83 
                  567778*************************9 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   3.6e-07     3e-05     127     160 ..      52      85 .]      38      85 .] 0.89

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 3.6e-07
    TIGR03864 127 eekvreLnGGhrrrveiarallhePklLLlDeat 160
                  ++  r+L+GG+ +r  +a al  +P +LLlDe+t
  MMETSP1061-20121228|36812_1  52 DQPWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  56679***************************97 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   4.4e-07   3.7e-05     614     643 ..      56      85 .]      49      85 .] 0.94

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 4.4e-07
    TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEat 643
                  + lsGG+ qR  +A aL+ +P +L+lDE+t
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  579*************************98 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0     4e-07   3.4e-05     128     157 ..      54      83 ..      35      85 .] 0.91

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 4e-07
    TIGR02142 128 lpgkLsGGekqRvaigRAlLssPeLLlmDe 157
                    ++LsGGe qR +++ Al  +P +Ll+De
  MMETSP1061-20121228|36812_1  54 PWRTLSGGESQRASLAIALALQPGVLLLDE 83 
                  5689*************************9 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.6      0.44        37      95     112 ..       9      26 ..       1      36 [. 0.49
   2 !   18.5   0.0   9.6e-07     8e-05     948     968 ..      54      74 ..      48      79 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.44
    TIGR00618  95 lrversqreteeeeqlkl 112
                  lr + +qr+ + + q+ l
  MMETSP1061-20121228|36812_1   9 LRFQHRQRQKQRQRQREL 26 
                  333333333333333333 PP

  == domain 2    score: 18.5 bits;  conditional E-value: 9.6e-07
    TIGR00618 948 pvetlSGGEtFlaslslaLal 968
                  p +tlSGGE+ +asl++aLal
  MMETSP1061-20121228|36812_1  54 PWRTLSGGESQRASLAIALAL 74 
                  89******************9 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   8.3e-07     7e-05     117     152 ..      50      85 .]      43      85 .] 0.93

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 8.3e-07
    TIGR01188 117 aadkkvktysgGmrrrlelaasliaqPevlfLDEPt 152
                  a d++ +t+sgG  +r +la++l  qP vl LDE t
  MMETSP1061-20121228|36812_1  50 AFDQPWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  6688999***************************87 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   7.9e-07   6.6e-05     141     169 ..      57      85 .]      37      85 .] 0.89

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 7.9e-07
    TIGR02211 141 elsGGerqrvaiaralvnkPklvladePt 169
                   lsGGe qr+++a al  +P ++l de t
  MMETSP1061-20121228|36812_1  57 TLSGGESQRASLAIALALQPGVLLLDEST 85 
                  79*************************87 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.1e-06   9.4e-05     143     171 ..      55      83 ..      45      85 .] 0.90

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.1e-06
    TIGR02315 143 adqLsGGqqqRvaiaRalaqqpklilaDE 171
                    +LsGG+ qR ++a ala qp ++l DE
  MMETSP1061-20121228|36812_1  55 WRTLSGGESQRASLAIALALQPGVLLLDE 83 
                  568*************************9 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       6.5   5.5e+02      98     114 ..      11      27 ..       5      36 .. 0.63
   2 !   19.2   0.0   1.4e-06   0.00012     127     156 ..      55      84 ..      37      85 .] 0.88

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 6.5
    TIGR01186  98 llkideqerkekaleal 114
                  ++  ++q+++++ +e+ 
  MMETSP1061-20121228|36812_1  11 FQHRQRQKQRQRQRELN 27 
                  55556666666666654 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.4e-06
    TIGR01186 127 PdelsGGmqqrvGlaralaaePdlllmdea 156
                     lsGG  qr  la ala +P +ll+de+
  MMETSP1061-20121228|36812_1  55 WRTLSGGESQRASLAIALALQPGVLLLDES 84 
                  468*************************96 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.5   0.1   1.4e-06   0.00012     131     159 ..      57      85 .]      49      85 .] 0.94

  Alignments for each domain:
  == domain 1    score: 19.5 bits;  conditional E-value: 1.4e-06
    TIGR03410 131 dLsGGqqqqlaiaRaLvtePklllLDePt 159
                   LsGG  q  ++a aL+ +P +llLDe t
  MMETSP1061-20121228|36812_1  57 TLSGGESQRASLAIALALQPGVLLLDEST 85 
                  69*************************76 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.7   0.0   1.2e-06   9.7e-05     144     177 ..      52      85 .]       3      85 .] 0.88

  Alignments for each domain:
  == domain 1    score: 19.7 bits;  conditional E-value: 1.2e-06
    TIGR02324 144 slaPatfsGGekqRvniaraliadrPiLLLdePt 177
                    +  t sGGe qR  +a al  +  +LLLde t
  MMETSP1061-20121228|36812_1  52 DQPWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  4566899****************8889****987 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   1.5e-06   0.00013     137     166 ..      56      85 .]      45      85 .] 0.90

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 1.5e-06
    TIGR00960 137 vqlsgGeqqrvaiaravvnkPallladePt 166
                   +lsgGe qr ++a a+  +P +ll de t
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  58**************************76 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.4   0.0   1.6e-06   0.00013     107     140 ..      50      83 ..      43      85 .] 0.90

  Alignments for each domain:
  == domain 1    score: 19.4 bits;  conditional E-value: 1.6e-06
    TIGR01184 107 aadkrpeqlsggmkqrvaiaralsirpkllllde 140
                  a d+    lsgg  qr ++a al+++p +lllde
  MMETSP1061-20121228|36812_1  50 AFDQPWRTLSGGESQRASLAIALALQPGVLLLDE 83 
                  66777889*************************9 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.4e-06    0.0002     134     169 ..      50      85 .]       8      85 .] 0.84

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.4e-06
    TIGR02982 134 rldykpedlsgGqkqrvaiaralvarPklvladePt 169
                   +d+  + lsgG  qr ++a al+ +P ++l de t
  MMETSP1061-20121228|36812_1  50 AFDQPWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  56666789**************************87 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.1   3.2e-06   0.00027     470     499 ..      56      85 .]      50      85 .] 0.94

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 3.2e-06
    TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPt 499
                  ++lSGGe qR  lA aL  +  vllLDE t
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  589*************************66 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   3.1e-06   0.00026     140     168 ..      57      85 .]      47      85 .] 0.92

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 3.1e-06
    TIGR02314 140 nlsggqkqrvaiaralasepkvllcdeat 168
                   lsgg+ qr ++a ala +p vll de+t
  MMETSP1061-20121228|36812_1  57 TLSGGESQRASLAIALALQPGVLLLDEST 85 
                  69*************************97 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.6   0.0     3e-06   0.00025     155     189 ..      51      85 .]       7      85 .] 0.78

  Alignments for each domain:
  == domain 1    score: 17.6 bits;  conditional E-value: 3e-06
    TIGR03719 155 edakveklsGGekrrvalcrlllekPdlllldePt 189
                   d+   +lsGGe +r +l+  l  +P +lllde t
  MMETSP1061-20121228|36812_1  51 FDQPWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  46777888888888888888888888888888876 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   3.9e-06   0.00032     400     431 ..      54      85 .]      44      85 .] 0.91

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 3.9e-06
    TIGR02633 400 piarlsGGnqqkavlakllllnprvlildept 431
                  p  +lsGG+ q+a la  l l+p vl+lde t
  MMETSP1061-20121228|36812_1  54 PWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  6678**************************87 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.4e-06   0.00037     593     621 ..      57      85 .]      49      85 .] 0.94

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.4e-06
    TIGR01846 593 alsGGqrqrialaralvanPrilildeat 621
                  +lsGG  qr +la al  +P +l+lde+t
  MMETSP1061-20121228|36812_1  57 TLSGGESQRASLAIALALQPGVLLLDEST 85 
                  79*************************98 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0     5e-06   0.00042     617     645 ..      57      85 .]      51      85 .] 0.94

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 5e-06
    TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAt 645
                   lsgG  qr  +A AL  +P vL+LDe t
  MMETSP1061-20121228|36812_1  57 TLSGGESQRASLAIALALQPGVLLLDEST 85 
                  69*************************98 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   5.5e-06   0.00046     164     194 ..      55      85 .]       5      85 .] 0.93

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 5.5e-06
    TIGR00955 164 vkglSgGerkRlalaselltdPilLfcDEPT 194
                   ++lSgGe +R +la  l  +P +L++DE T
  MMETSP1061-20121228|36812_1  55 WRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  589**************************87 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   8.1e-06   0.00067     128     162 ..      51      85 .]      37      85 .] 0.86

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 8.1e-06
    TIGR03608 128 lkkkiyelsgGekqRvalarillkeselilADEPt 162
                   ++   +lsgGe qR +la +l  ++ ++l DE t
  MMETSP1061-20121228|36812_1  51 FDQPWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  5677789**************************87 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   1.3e-05    0.0011     125     153 ..      57      85 .]      51      85 .] 0.93

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1.3e-05
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePt 153
                   lsGG  qR  +a+al+l++ +l+ De t
  MMETSP1061-20121228|36812_1  57 TLSGGESQRASLAIALALQPGVLLLDEST 85 
                  59*************************76 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.3e-05    0.0011     602     631 ..      56      85 .]      46      85 .] 0.93

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.3e-05
    TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPt 631
                  + LSgG  q  +la al  +p +llLDE t
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  68**************************77 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   1.6e-05    0.0013     476     504 ..      57      85 .]      51      85 .] 0.95

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.6e-05
    TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeat 504
                  tLsGG  qr ++a a+  +  +LLLde+t
  MMETSP1061-20121228|36812_1  57 TLSGGESQRASLAIALALQPGVLLLDEST 85 
                  7**************************98 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.6e-05    0.0022     453     480 ..      56      83 ..      49      85 .] 0.94

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.6e-05
    TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDe 480
                   +LsgG  qR +La al  +P +++LDe
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDE 83 
                  58*************************9 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0     3e-05    0.0025     163     190 ..      56      83 ..      48      85 .] 0.91

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 3e-05
    TIGR03415 163 gelsGGmqqrvGlarafateadillmde 190
                    lsGG  qr  la a+a++  +ll+de
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDE 83 
                  579************************9 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   3.6e-05     0.003     167     196 ..      56      85 .]      52      85 .] 0.94

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.6e-05
    TIGR03269 167 rdlsGGekqrvvlarqlakeplllladept 196
                  r lsGGe qr  la  la +p +ll de t
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  89*************************987 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   6.5e-05    0.0054     610     639 ..      56      85 .]      45      85 .] 0.94

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 6.5e-05
    TIGR01193 610 ssisgGqkqrlalarallsdskvlildest 639
                   ++sgG  qr +la al  +  vl+ldest
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  589*************************98 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   6.6e-05    0.0055     132     161 ..      56      85 .]       3      85 .] 0.92

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.6e-05
    TIGR03522 132 galskGyrqrvGlakallhdPkvlildePt 161
                    ls G  qr+ la al  +P vl+lde t
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  57999***********************87 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.0   9.9e-05    0.0083     470     498 ..      57      85 .]      48      85 .] 0.93

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 9.9e-05
    TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeat 498
                   LsGG  qR ++a al  +  +L+LDe+t
  MMETSP1061-20121228|36812_1  57 TLSGGESQRASLAIALALQPGVLLLDEST 85 
                  69*******999999999*********98 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.9   0.0   0.00016     0.014     123     154 ..      52      83 ..      38      85 .] 0.84

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 0.00016
    TIGR01277 123 erlpeelsGGqrqrvalarclvrekpilllde 154
                  ++    lsGG+ qr +la  l  +  +lllde
  MMETSP1061-20121228|36812_1  52 DQPWRTLSGGESQRASLAIALALQPGVLLLDE 83 
                  555578*****************99******9 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025     0.021     132     163 ..      54      85 .]      40      85 .] 0.91

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00025
    TIGR01288 132 rvadlsggmkrrltlaralindpqllildept 163
                  +  +lsgg  +r +la al  +p +l+lde t
  MMETSP1061-20121228|36812_1  54 PWRTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  5678**************************87 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00031     0.026     824     845 ..      53      74 ..      43      85 .] 0.71

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00031
    TIGR00630 824 qpattLsGGeaqrvkLakeLsk 845
                  qp  tLsGGe+qr  La  L  
  MMETSP1061-20121228|36812_1  53 QPWRTLSGGESQRASLAIALAL 74 
                  7788888888888888887754 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   0.00048      0.04     138     170 ..      52      84 ..      15      85 .] 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00048
    TIGR03411 138 dkkaglLshGqkqwLeigmllvqepkllllDeP 170
                  d+   +Ls G+ q+  +++ l+ +p +lllDe 
  MMETSP1061-20121228|36812_1  52 DQPWRTLSGGESQRASLAIALALQPGVLLLDES 84 
                  666789*************************95 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00061     0.051     123     152 ..      56      85 .]      38      85 .] 0.89

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00061
    TIGR03740 123 kqfslGmkqrlGiaiallnkPkllildePt 152
                  + +s G  qr  +aial  +P +l+lde t
  MMETSP1061-20121228|36812_1  56 RTLSGGESQRASLAIALALQPGVLLLDEST 85 
                  56788999********************75 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   0.00068     0.057     119     154 ..      49      84 ..       4      85 .] 0.88

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00068
    TIGR01189 119 gledlpvaqLsAGqkrRlalarLllskaplWiLDEP 154
                  ++ d p ++Ls G  +R +la  l  +  + +LDE 
  MMETSP1061-20121228|36812_1  49 DAFDQPWRTLSGGESQRASLAIALALQPGVLLLDES 84 
                  5668999***************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        60  (0.014627); expected 4.1 (0.001)
Passed Fwd filter:                        49  (0.0119454); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              49  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 467.46
//
Query:       MMETSP1061-20121228|36807_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 803.93
//
Query:       MMETSP1061-20121228|36821_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0012   16.8   0.0     0.0014   16.5   0.0    1.1  1  TIGR00369 unchar_dom_1: uncharacterized domain 1


Domain annotation for each model (and alignments):
>> TIGR00369  unchar_dom_1: uncharacterized domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   3.5e-07    0.0014      18      51 ..      37      70 ..      31      75 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 3.5e-07
    TIGR00369 18 levempvkertlqpigsvHGGvlaaLadtagsla 51
                 l + + v++++ + ++s+HGG+ a+ +d   s++
  MMETSP1061-20121228|36821_1 37 LILSFSVTQELCNSFDSLHGGAQATAVDVFTSVL 70
                 678999*******************999887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 557.29
//
Query:       MMETSP1061-20121228|36822_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.28
# Mc/sec: 268.69
//
Query:       MMETSP1061-20121228|36837_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.38
# Mc/sec: 222.30
//
Query:       MMETSP1061-20121228|36831_1  [L=184]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (184 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 934.08
//
Query:       MMETSP1061-20121228|36852_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.28
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|36838_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-71  237.9   3.9    6.5e-71  237.4   2.7    1.1  1  TIGR00898 2A0119: cation transport protein
    4.7e-36  122.4  19.8    2.5e-30  103.5   2.0    3.1  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    4.4e-34  115.2  13.8    1.1e-31  107.3   2.0    2.1  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2
    2.4e-25   86.9  21.2      6e-24   82.3   0.8    2.6  3  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    1.1e-17   62.0   4.0    1.1e-17   62.0   2.8    1.9  2  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    2.6e-15   54.2  10.7    1.5e-08   31.8   0.7    2.3  2  TIGR00887 2A0109: phosphate:H+ symporter
    1.8e-12   44.9   3.3    1.8e-12   44.9   2.3    2.1  3  TIGR00886 2A0108: nitrite transporter
    7.2e-12   42.7   1.7    7.2e-12   42.7   1.2    2.2  2  TIGR00893 2A0114: D-galactonate transporter
      8e-11   39.8   2.4      8e-11   39.8   1.6    2.3  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    4.2e-09   34.5   8.4    4.2e-09   34.5   5.8    2.9  3  TIGR00880 2_A_01_02: multidrug resistance protein
    4.8e-08   30.3  10.5    1.9e-05   21.7   0.9    2.3  2  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
      5e-05   20.1   4.1    9.9e-05   19.1   2.8    1.5  1  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family


Domain annotation for each model (and alignments):
>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  237.4   2.7   1.9e-73   6.5e-71      71     503 ..      50     559 ..      21     562 .. 0.90

  Alignments for each domain:
  == domain 1    score: 237.4 bits;  conditional E-value: 1.9e-73
    TIGR00898  71 eveeaaeasllgleplklsel.glaaledalegweyskdtlsstivtEwdlvcedawkvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird.........WRwLlllvslPlvlflvlv.wfvpESpRwlisq........grieeAlkiLkrvAkingk...............................klpaevlslslekel..sekkakkaslldllrtpklrkttlllmllwfttafsYygLvldleelggn.........................iYldllisglvelpaklitlllidrLgRrktmaaslllagvallllllvpeelk........llrtalavvgkagissaFqmaylytaELYPTvvRnlgvgvcstmarvGsiisPflvyvlgevslflplvifgvlallagllsllLPetkgvaL 503
                  ++++a e ++ g+++ + + + gl  ++da+e   +s   ls  +  Ewdl+      v+ + +vvf G LlG l+lGq +D+fGRk v+ ++  + avsgv taf  n++ +++ r+ vG+g +g +v   +L  Eflp +aR +  + ie+f+++G+l+ ++lAYl+ d         W+   +l s+P+++  +l   +vpESpRwl+ +           e+Al+iL+++A +ng+                                + ++  + +l+ke     + +    +++l+ tp+  ++t+ l++ wf+ +f+Yyg +++++ ++                           ++  ++i++ +e+ + +++l ++d++gR  ++ +++ ++g+a+++l l +   +        +l + la+++++ + +a  +  + t E+  T +R +g g++++mar+G+ +sP++v   +  sl+   +i+ ++ ++++  +  LPet g+ +
  MMETSP1061-20121228|36838_1  50 QIDDAIERIGTGTFQYQVLFAaGLCFMADAMEVLLLS--FLSTVLKHEWDLSE---HEVDSIVAVVFAGALLGTLILGQAADKFGRKPVFAVTSSIIAVSGVATAFCRNFEELIIARFFVGFGVGGLTVPFDTL-SEFLPNAARGKSLLYIEFFWTMGTLIVPMLAYLTLDtaaeigeshWQLFVILCSIPCFVSTILGmGLVPESPRWLLEKfsdhpedeAGSEKALQILRSAALKNGIsrdiidkelfpagtrlircwkdlgaiqrtqsPIFQKNNERELTKESslCCSDQTTGDIVKLFSTPEQSRVTMFLWATWFGFGFLYYGVIIAVSIVFTTeevnnngdmmnddvdgassslsygfDFAAIFITASSEIFGLIAVLYTVDKFGRIPSQTVAYRVGGAATFVLGLFATVFYaeggkfhrYLLIGLAFIARMAMMAASCTTWVATTEILSTDIRTTGHGTANAMARLGGFLSPYFVT--ESNSLSSIGGIMLAVSVITAECAQRLPETAGKSM 559
                  4577888999999999988777***************..66666789****87...889999****************************************************************77766666.6*********************************99999********************98886479********9863322222234689****************************************998765555555556666664423334677899**********************************999999999*******************************************************************999999989999***********************************************************99..66666667789999999999999*******9875 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.5   2.0   7.2e-33   2.5e-30      10     203 ..      59     258 ..      50     281 .. 0.87
   2 !    6.8   0.0    0.0017      0.57     221     270 ..     323     372 ..     304     387 .. 0.72
   3 !   18.1   4.9   6.4e-07   0.00022     291     394 ..     423     524 ..     408     526 .. 0.85

  Alignments for each domain:
  == domain 1    score: 103.5 bits;  conditional E-value: 7.2e-33
    TIGR00895  10 klsryqirvlilsflivlvdGldllvlgfaapalskewgldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavgglla......allipafgWrslflvggiiplllllll.ikvLpEsikflvek.k 203
                   +  +q +vl  + l ++ d +++l+l+f +  l++ew+l++ e+ +++++  +G++lG l++g +aD++gRk+v +v+  +++v  +a+a+  n+ +L+++Rf+ g G+Ggl+    +L sE+ p+  r++ + ++   +++G+++  +la      a  i +  W+   ++   ip ++  +l +  +pEs ++l ek  
  MMETSP1061-20121228|36838_1  59 GTGTFQYQVLFAAGLCFMADAMEVLLLSFLSTVLKHEWDLSEHEVDSIVAVVFAGALLGTLILGQAADKFGRKPVFAVTSSIIAVSGVATAFCRNFEELIIARFFVGFGVGGLTVPFDTL-SEFLPNAARGKSLLYIEFFWTMGTLIVPMLAyltldtAAEIGESHWQLFVILC-SIPCFVSTILgMGLVPESPRWLLEKfS 258
                  5567889999999*****************************************************************************************************999998.9************************99999722222244467778*9666666.799999888746789********9952 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.0017
    TIGR00895 221 eaqselaeekseekkkrsvvkllfkgklakatllLwllyflllvvvYllt 270
                   + ++ +    + +++ ++vkl  + + ++ t++Lw++ f   + +Y+++
  MMETSP1061-20121228|36838_1 323 RELTKESSLCCSDQTTGDIVKLFSTPEQSRVTMFLWATWFGFGFLYYGVI 372
                  33332222223455677999999999**************999****986 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 6.4e-07
    TIGR00895 291 lvllnvGgvlgslllgaladrlgpkvlalllllaavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpila 394
                  +++l++   +g +   ++a r+g  ++++l l+a vf    ++  ++  ll+ l++i+ +++++a     ++++e+ +t+iR tg g+a ++ rlg++++p  +
  MMETSP1061-20121228|36838_1 423 IAVLYTVDKFGRIPSQTVAYRVGGAATFVLGLFATVFYAEGGK--FHRYLLIGLAFIARMAMMAASCTTWVATTEILSTDIRTTGHGTANAMARLGGFLSPYFV 524
                  4555666667888888888888888999999999999887777..88899999************************************************865 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.3   2.0   3.4e-34   1.1e-31     151     466 ..      50     373 ..      35     386 .. 0.86
   2 !   13.5   2.5   7.8e-06    0.0027     606     739 ..     416     557 ..     377     560 .. 0.67

  Alignments for each domain:
  == domain 1    score: 107.3 bits;  conditional E-value: 3.4e-34
    TIGR01299 151 qyelilrecghgrfqwalyfvlglalmadgvevfvvgfvlpsaekdlclsdsnkgllglivylgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmiggvyaaamawaiiphygwsfsmgsayqfhswrvfvlvcalps.vsavvalttqpesprfllev.gkh..de.....awmvlklvhdtnmrakgqpekvfsvtkiktikqidelieiesdtgtwyrrlfvrilslly......qvwltflrcfsy.evreitlkltivwftlsfsyyglsv 466
                  q +  ++  g g fq+ + f  gl++mad +ev+++ f+    +++  ls+ +   + ++v+ g ++g+++ g  adk grk  + ++ s+ +v    ++f + +  ++++r++ g+g+gg + + f  ++e+l +  rg+ l ++ +fw +g +    +a+  +     + ++g +     w++fv++c++p+ vs++  + + pespr+lle+   h  de     a  +l+     n  ++   +k +  +  + i+   +l  i+      +++   r l++        q  +++++ fs  e  ++t+ l + wf + f yyg+ +
  MMETSP1061-20121228|36838_1  50 QIDDAIERIGTGTFQYQVLFAAGLCFMADAMEVLLLSFLSTVLKHEWDLSEHEVDSIVAVVFAGALLGTLILGQAADKFGRKPVFAVTSSIIAVSGVATAFCRNFEELIIARFFVGFGVGG-LTVPFDTLSEFLPNAARGKSLLYIEFFWTMGTLIVPMLAYLTLDT---AAEIGES----HWQLFVILCSIPCfVSTILGMGLVPESPRWLLEKfSDHpeDEagsekALQILRSAALKNGISRDIIDKELFPAGTRLIRCWKDLGAIQRTQSPIFQKNNERELTKESslccsdQTTGDIVKLFSTpEQSRVTMFLWATWFGFGFLYYGVII 373
                  556678999**************************************************************************************************************99.5788****************************9999999876653...4566654....6***********9678899*************973344335522222567888888888888998888888888999999999*****9999999999999887654111122677899****86167799*****************876 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 7.8e-06
    TIGR01299 606 lavlpgnivsallmdkigrlrm......lag..ssvlsgvscfflsfg.ts.esamiallclynglsiaawnaldvltvelypsdkratafgflnalcklaavlgiliftslvsitkaipillasavlvlgsllalklpetrtq 739
                   + + g i     +dk gr+        ++g  + vl   +  f   g +    ++i+l  +     +aa  +  v t e+  +d r+t+ g  na+++l   l     t   s++    i+la +v+   +  a +lpet ++
  MMETSP1061-20121228|36838_1 416 SSEIFGLIAVLYTVDKFGRIPSqtvayrVGGaaTFVLGLFATVFYAEGgKFhRYLLIGLAFIARMAMMAASCTTWVATTEILSTDIRTTGHGTANAMARLGGFLSPYFVTESNSLSSIGGIMLAVSVI--TAECAQRLPETAGK 557
                  344555555555677777764311111122311345555554444444133145678887777777788888999************************************************97765..677899****9886 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.8   1.8e-26     6e-24      88     257 ..      93     259 ..      55     295 .. 0.82
   2 ?   -2.5   0.1      0.85   2.9e+02     477     495 ..     362     380 ..     330     384 .. 0.79
   3 !   13.3   5.9   1.4e-05    0.0047     362     506 ..     419     558 ..     397     562 .. 0.65

  Alignments for each domain:
  == domain 1    score: 82.3 bits;  conditional E-value: 1.8e-26
    TIGR00879  88 kftsnlsdasssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifg...sgklvanntlgwriplglqlipall.lllglfflPesprwLvekgke 257
                  k   +++d+s ++   +v+++++G+l g l++g   d+fgrk+ + +++ ++ ++++ + +++  ++   li++R+++G+gvG++++   + +sE+ p a Rg+   ++++++t+G l++ ++      +     ++ w++ + l+ ip ++  +lg+ ++PesprwL+ek   
  MMETSP1061-20121228|36838_1  93 K---HEWDLSEHEVDSIVAVVFAGALLGTLILGQAADKFGRKPVFAVTSSIIAVSGVAT-AFCRNFE--ELIIARFFVGFGVGGLTVPFDT-LSEFLPNAARGKSLLYIEFFWTMGTLIVPMLAyltLDTAAEIGESHWQLFVILCSIPCFVsTILGMGLVPESPRWLLEKFSD 259
                  2...4456999999************************************999999999.6666555..9**************9776665.8*************************999999777778888899*********99998762577899***********9753 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 0.85
    TIGR00879 477 qgvvFiffgalnvlalilv 495
                  +g+ F+++g++ +++++++
  MMETSP1061-20121228|36838_1 362 FGFGFLYYGVIIAVSIVFT 380
                  5667999999988888876 PP

  == domain 3    score: 13.3 bits;  conditional E-value: 1.4e-05
    TIGR00879 362 aaTfva.iflvdrfGRrtllliG.aagmaiclfvlgilgvssvtgsskaasivaivfillfiaaya.lgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlen.sigqgvvFiffgalnvlalilvyfflpetkglt 506
                  ++ ++a +++vd+fGR + +++   +g a++++++ +++v+++ g  k   ++     l+fia  a ++  +  wv ++Ei ++ +R+ g   a a++ l+ f+    f++  ++ s   g    ++ a +v+++ ++   lpet+g++
  MMETSP1061-20121228|36838_1 419 IFGLIAvLYTVDKFGRIPSQTVAyRVGGAATFVLGLFATVFYAEG-GKFHRYLL--IGLAFIARMAmMAASCTTWVATTEILSTDIRTTGHGTANAMARLGGFLSP-YFVTESNSlSSIGG----IMLAVSVITAECA-QRLPETAGKS 558
                  67778879***************8677766666655555555554.23334433..345555555515777889****************9999999998888733.33333333333333....3333333333333.3466666665 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.0   2.8   3.2e-20   1.1e-17      10     194 ..      64     252 ..      59     261 .. 0.84
   2 ?   -1.7   0.8      0.71   2.4e+02     328     381 ..     468     521 ..     410     542 .. 0.73

  Alignments for each domain:
  == domain 1    score: 62.0 bits;  conditional E-value: 3.2e-20
    TIGR00891  10 qwnafsaaylgylldafdfflvalvlaevaeefdrttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllis.gyavGfvla.avvysvv...vnvlgdsWriLfflsilpiilalflrk.rvpeaevw 194
                  q++  +aa l ++ da + +l++   + +++e+d+++ +v + ++++++   +G+l+lG  aD+ gr+  + ++ ++ +v ++++af+ ++e l+i+r+ +G g+gG      +l  e  P  +r++   l+i+  +++G ++  +++y+ +    ++ +  W++   l  +p  ++ +l + +vpe+  w
  MMETSP1061-20121228|36838_1  64 QYQVLFAAGLCFMADAMEVLLLSFLSTVLKHEWDLSEHEVDSIVAVVFAGALLGTLILGQAADKFGRKPVFAVTSSIIAVSGVATAFCRNFEELIIARFFVGFGVGGLTVPFDTL-SEFLPNAARGKS-LLYIEfFWTMGTLIVpMLAYLTLdtaAEIGESHWQLFVILCSIPCFVSTILGMgLVPESPRW 252
                  678899999**************************************************************************************************87666655.59********95.555551569**876514455544111344456698888889999999888765378998887 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.71
    TIGR00891 328 kavLglglfllqllvqGvwGilPkhlaelapadaravvaGltYqlGnLaaalas 381
                   ++L  ++f+ ++  + +     +  +e+  +d+r+ + G +  +  L++ l++
  MMETSP1061-20121228|36838_1 468 RYLLIGLAFIARMAMMAASCTTWVATTEILSTDIRTTGHGTANAMARLGGFLSP 521
                  445544559999999999999999999999999999999999988888887665 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.7   4.5e-11   1.5e-08       9     167 ..      62     205 ..      52     253 .. 0.77
   2 !   27.0   2.0   1.3e-09   4.3e-07     269     446 ..     333     522 ..     305     565 .. 0.74

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 4.5e-11
    TIGR00887   9 kygwrhvkaivvaGvGFftDsYDlFaislvtkllgyvYyetkgklpssvsalvkasasvgtllgqllfglladllgrkrvygleliivivatvasalsakssalsvvatllfyrlllgvGiggdyplsaiitsefatkkrRGaliaavFamqgfGilag 167
                  +    + +++  aG+ F+ D+ ++  +s+++++l+   ++ + +   s    + a+ ++g llg l+ g  ad++grk v++++  i+ v+ va+a   +       + l++ r+++g+G+gg   +     sef  +  RG  +  +  + ++G+l  
  MMETSP1061-20121228|36838_1  62 T---FQYQVLFAAGLCFMADAMEVLLLSFLSTVLKH-EWDLSEHEVDS----IVAVVFAGALLGTLILGQAADKFGRKPVFAVTSSIIAVSGVATAFCRN------FEELIIARFFVGFGVGGL-TVPFDTLSEFLPNAARGKSLLYIEFFWTMGTLIV 205
                  3...47788999*********************987.46655444333....4567899**********************************9887644......456777899999*99984.3334456888888888876666666666666654 PP

  == domain 2    score: 27.0 bits;  conditional E-value: 1.3e-09
    TIGR00887 269 vpkasssdfvtkfskrkhgklLlGtavsWflLDiafYgvnLnqkvilkaiGysetaeknn.....ayeel.yktavgnliivlagtvPGYWvtvflvdklGRkaiqlmGFviltvlfvvlaiaynelsek.gllalyvla...qf..FanFGPnattFivPaevFPaRlRstahGisaaaGkvGaiiaql 446
                     + + d+v+ fs   ++++ +    +Wf     +Ygv +  ++++ +    ++++ +n     a  +l y    + + i+  + + G     ++vdk+GR + q   + + ++  +vl++    +  + g +  y l+   ++   a      tt++  +e+  + +R+t+hG + a+ ++G  ++  
  MMETSP1061-20121228|36838_1 333 CSDQTTGDIVKLFSTPEQSRVTMFLWATWFGFGFLYYGVIIAVSIVFTTEEVNNNGDMMNddvdgASSSLsYGFDFAAIFITASSEIFGLIAVLYTVDKFGRIPSQTVAYRVGGAATFVLGLFATVFYAEgGKFHRYLLIglaFIarMAMMAASCTTWVATTEILSTDIRTTGHGTANAMARLGGFLSPY 522
                  3456677777777777777777777889******************9988887777777765555555553778999***************************************999997554444433555555443110322256788999*****************************988755 PP

>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   2.3   5.2e-15   1.8e-12       2     126 ..      67     189 ..      66     193 .. 0.94
   2 ?   -3.2   0.8       2.2   7.4e+02      57      57 ..     413     413 ..     355     494 .. 0.55
   3 ?   -2.5   0.2       1.3   4.4e+02     270     308 ..     506     543 ..     473     552 .. 0.59

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 5.2e-15
    TIGR00886   2 aLflswlafflsFlvWfalspLvvqiikedlgLskaqlallvavpvlatavlRiilgflvdkfGpRkttallllllaiPllllalavssfsellllrlliGiaGasFvislamisefFpkkevGt 126
                  +Lf++ l+f+   +  ++ls L + ++k++++Ls+ ++  +vav  +++++  +ilg ++dkfG + ++a++  + a+  +++a+ + +f+el++ r+++G++ +   +     sef p+   G+
  MMETSP1061-20121228|36838_1  67 VLFAAGLCFMADAMEVLLLSFLST-VLKHEWDLSEHEVDSIVAVVFAGALLGTLILGQAADKFGRKPVFAVTSSIIAVSGVATAFCR-NFEELIIARFFVGFGVGGLTVPFDTLSEFLPNAARGK 189
                  688888899988899999999999.889***********************************************************.*******************************999986 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.2
    TIGR00886  57 l 57 
                  +
  MMETSP1061-20121228|36838_1 413 I 413
                  1 PP

  == domain 3    score: -2.5 bits;  conditional E-value: 1.3
    TIGR00886 270 lallgllaRplGGllsDklggarkllvlfllvamgaalv 308
                   + ++++aR lGG+ls  +      l ++ ++++++ ++
  MMETSP1061-20121228|36838_1 506 HGTANAMAR-LGGFLSPYFVTESNSLSSIGGIMLAVSVI 543
                  467788888.78888876666444444454555444444 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   1.2   2.1e-14   7.2e-12      13     174 ..      85     251 ..      74     278 .. 0.92
   2 ?    2.5   4.6     0.036        12     294     368 ..     449     525 ..     405     545 .. 0.67

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 2.1e-14
    TIGR00893  13 lSiAavtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs......WqlvFiieGvlaiilgvlilkvikdkpe 174
                  lS+ +  lk++  ls+ ++  +++++++g +l+ l  g + d++G k + av   + ++  +++af  ++ +li++R+ +G   ++l+  +   ++++ P++ r+    +   +  +g++i++ l+++ l +        Wql +i++ +++++  +l + ++++ p+
  MMETSP1061-20121228|36838_1  85 LSFLSTVLKHEWDLSEHEVDSIVAVVFAGALLGTLILGQAADKFGRKPVFAVTSSIIAVSGVATAFCRNFEELIIARFFVGFGVGGLTVPFD-TLSEFLPNAARGKSLLYIEFFWTMGTLIVPMLAYLTLDTAAeigeshWQLFVILCSIPCFVSTILGMGLVPESPR 251
                  7888999*******************************************************************************999887.5789******************************9877776999999******************9999999987 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.036
    TIGR00893 294 iaglvlsllliatn.lvaskiaalalvalaffgkgl.aailwavisdvlskeiagltgGlinllGnlagivgPivig 368
                  + +l l + ++ ++  ++  ++ + l+ +a ++ ++ +  +w   ++ ls  i  ++ G+ n+++ l+g++ P  + 
  MMETSP1061-20121228|36838_1 449 TFVLGLFATVFYAEgGKFHRYLLIGLAFIARMAMMAaSCTTWVATTEILSTDIRTTGHGTANAMARLGGFLSPYFVT 525
                  22222222223332246677888888888888877756778999*****************************8775 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   1.6   2.3e-13     8e-11      31     112 ..      92     173 ..      66     240 .. 0.86
   2 ?   -2.5   2.3       1.7   5.7e+02     240     340 ..     416     513 ..     395     554 .. 0.55

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 2.3e-13
    TIGR00710  31 iakdlsvsasavqltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalV 112
                  ++++ + s   v    +  ++g  +g L+lG  +D++GRkpv  +   + a+s ++ a+  n e l+++Rf+ +fg+    V
  MMETSP1061-20121228|36838_1  92 LKHEWDLSEHEVDSIVAVVFAGALLGTLILGQAADKFGRKPVFAVTSSIIAVSGVATAFCRNFEELIIARFFVGFGVGGLTV 173
                  666777888888888999999*******************************************************976555 PP

  == domain 2    score: -2.5 bits;  conditional E-value: 1.7
    TIGR00710 240 spevfgllfalniialifgsfligrlvkkigaksllrialvllivsavllvltallglvslalviavailvgigvslvlsialalaLeefphva..Gtasall 340
                  s e fgl+++l ++   fg +  + +  ++g+   ++++   l+++++  +  +++   ++ l+++  + ++   s    +a + +L    + +  Gta+a++
  MMETSP1061-20121228|36838_1 416 SSEIFGLIAVLYTVDK-FGRIPSQTVAYRVGGAATFVLG---LFATVFYAEGGKFHRYLLIGLAFIARMAMMA-ASCTTWVATTEILSTDIRTTghGTANAMA 513
                  4444444444444443.3334444444444444444444...3445555555566665555555555554444.45555555566665544444114555554 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   5.8   1.2e-11   4.2e-09      10     140 ..     113     248 ..     106     249 .. 0.81
   2 ?   -3.1   0.1       4.7   1.6e+03      87     101 ..     353     367 ..     339     381 .. 0.55
   3 ?    4.3   2.0     0.026       8.8       8      53 ..     446     491 ..     442     545 .. 0.74

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 1.2e-11
    TIGR00880  10 gqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla......qalgwralflila.llallafilllfllpe 140
                  g l+  +++g  +d++Grkpv  v+ +i+++s +++a+ +n++ liiar+++Gfg +  l++   +++++ ++  r++ l ++  + ++g ++ p+l  +          ++w  lf+il+ + + +++il + l+pe
  MMETSP1061-20121228|36838_1 113 GALLGTLILGQAADKFGRKPVFAVTSSIIAVSGVATAFCRNFEELIIARFFVGFGVG-GLTVPFDTLSEFLPNAARGKSLLYIEFFWTMGTLIVPMLAYLTLdtaaeiGESHW-QLFVILCsIPCFVSTILGMGLVPE 248
                  56677778888889*****************************************99.567777999******************************8776666654455677.455555414466666666666665 PP

  == domain 2    score: -3.1 bits;  conditional E-value: 4.7
    TIGR00880  87 valgllsagialgpi 101
                  v + l+++ + +g++
  MMETSP1061-20121228|36838_1 353 VTMFLWATWFGFGFL 367
                  444445444444443 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.026
    TIGR00880   8 AlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitv 53 
                  +++++v+++++ ++ +  G+ + +l+  + f++  +++a+s + +v
  MMETSP1061-20121228|36838_1 446 GAATFVLGLFATVFYAEGGKFHRYLLIGLAFIARMAMMAASCTTWV 491
                  7889****************99999999999999999999955554 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.9   5.6e-08   1.9e-05      39     117 ..     105     175 ..      82     243 .. 0.79
   2 !   13.2   1.6   2.1e-05    0.0072     266     396 ..     412     541 ..     313     545 .. 0.62

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 5.6e-08
    TIGR00883  39 atfavgFlaRplGaivfGalgDrlGRkktLvvtlllMgigtvligllPsyatiGiwApilLlllrliQGlslGgEygga 117
                  ++ av F+   lG +++G+ +D++GRk ++ vt  +++++ v+ +   ++++        L+++r++ G+++Gg     
  MMETSP1061-20121228|36838_1 105 SIVAVVFAGALLGTLILGQAADKFGRKPVFAVTSSIIAVSGVATAFCRNFEE--------LIIARFFVGFGVGGLTVPF 175
                  56799999999************************************99998........7999999999999955444 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 2.1e-05
    TIGR00883 266 vlllalillllviplsgllsdriGr...rkvlilltvlaallavpllsalless.sil..lvlllllllalivamytgvmaallaelfptevRytgvslaynlasviggglapviaaaLvaltgdkaavgiylllla 396
                   +++++ ++ l+  l  +  d++Gr   ++v + ++ +a+++  ++ +++ +++ ++   l++ l +++ +++ +  + +  +++e+++t +R+tg + a ++a + gg l+p+    +v+ +++ +++g ++l+++
  MMETSP1061-20121228|36838_1 412 FITASSEIFGLIAVL--YTVDKFGRipsQTVAYRVGGAATFVLGLFATVFYAEGgKFHryLLIGLAFIARMAMMAASCTTWVATTEILSTDIRTTGHGTANAMARL-GGFLSPY----FVTESNSLSSIGGIMLAVS 541
                  333333333333333..4579***9433334444444444444344445554444554104444444555555566677778899***************999985.6655555....4444444444554444444 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   2.8   2.9e-07   9.9e-05      54     145 ..     118     208 ..      67     248 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.9e-07
    TIGR00711  54 IpltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiL 145
                   ++ g +a+++g++ +f v+  + ++s ++ +   n+e lii+R + gfg g l++  + +l +  p + rg+ l  + +  +++  + P+L
  MMETSP1061-20121228|36838_1 118 TLILGQAADKFGRKPVFAVTSSIIAVSGVATAFCRNFEELIIARFFVGFGVGGLTV-PFDTLSEFLPNAARGKSLLYIEFFWTMGTLIVPML 208
                  5678899******************************************9999875.578999999******99976666655555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.71
# Mc/sec: 1124.70
//
Query:       MMETSP1061-20121228|36855_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0047   15.4   0.0       0.16   10.5   0.0    2.5  2  TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family
  ------ inclusion threshold ------
       0.26    9.0   3.4      0.096   10.4   0.1    1.9  2  TIGR02978 phageshock_pspC: phage shock protein C


Domain annotation for each model (and alignments):
>> TIGR01725  phge_HK97_gp10: phage protein, HK97 gp10 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   7.6e-05      0.16       7      89 ..      85     169 ..      83     188 .. 0.92
   2 ?    1.8   0.0     0.037        75      36      65 ..     389     422 ..     382     444 .. 0.78

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.6e-05
    TIGR01725   7 liqklekvgkevkakaerkalkaganviraaaksnapvekgkkhksirdsikkkkk.a.Gvksvtvgvg.kknawyarflEfGTsk 89 
                  l ++le++++ ++ ++ +   kag+ +++++a    p  +g  h+++ d i++k+  +  +  ++ g + k+n+ + ++l +GT k
  MMETSP1061-20121228|36855_1  85 LESTLEDISSALNGTQLNVYAKAGKYFLYDKATGFNPEYPGI-HARMMDHISQKGGfTwRDSFGEWGEEeKGNSSFTELLQWGTDK 169
                  678999999999999999999********************9.***********999888888999999899************86 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.037
    TIGR01725  36 aaaksnap....vekgkkhksirdsikkkkkaGv 65 
                  +++k+  p    +++gk+ k+++ds+ +k +aG+
  MMETSP1061-20121228|36855_1 389 EKQKASNPdctlKWEGKTVKNLADSFATKHDAGL 422
                  566666663333699**99********9999765 PP

>> TIGR02978  phageshock_pspC: phage shock protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.6   0.3      0.52   1.1e+03      24      43 ..     221     240 ..     219     244 .. 0.68
   2 ?   10.4   0.1   4.7e-05     0.096      37     105 ..     509     578 ..     487     594 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.6 bits;  conditional E-value: 0.52
    TIGR02978  24 fgvevllvRilvvlallfgl 43 
                  f++ v++v ++v++a  f+ 
  MMETSP1061-20121228|36855_1 221 FDIWVWVVILVVIVASAFSY 240
                  56667777777777777765 PP

  == domain 2    score: 10.4 bits;  conditional E-value: 4.7e-05
    TIGR02978  37 lallfglgllvlvaYialvllldkkpeelyeeeevkkkfwqaget.pkealrevkeelrrleerlrevEr 105
                  + + + +++++lv+ ++ ++  + k+++ +++e +k+++  ++ +  ++ +++v+eelr+l++r+  + +
  MMETSP1061-20121228|36855_1 509 MLFQVVGTMIALVIAFVSGFEPKTKSKRHVRRELTKRNLSVKCDSdDEKRVDSVQEELRQLNQRIDVMTE 578
                  334445566667777777777777777777777799999999999999*****************98865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       231  (0.056314); expected 82.0 (0.02)
Passed bias filter:                      147  (0.0358362); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.27
# Mc/sec: 2928.20
//
Query:       MMETSP1061-20121228|36881_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 250.08
//
Query:       MMETSP1061-20121228|36905_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 489.46
//
Query:       MMETSP1061-20121228|36906_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 775.44
//
Query:       MMETSP1061-20121228|36919_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 697.66
//
Query:       MMETSP1061-20121228|36913_1  [L=586]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.6e-205  679.4   0.0   5.9e-205  679.1   0.0    1.1  1  TIGR02731 phytoene_desat: phytoene desaturase
    2.1e-77  258.8   0.0    1.5e-76  256.0   0.0    1.9  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    1.3e-60  203.8   0.0    1.6e-60  203.4   0.0    1.1  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
    2.9e-17   60.2   0.0    1.5e-13   48.0   0.0    2.2  2  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    1.3e-08   31.8   0.0    3.4e-07   27.1   0.0    2.1  2  TIGR02734 crtI_fam: phytoene desaturase
    1.5e-07   28.5   0.0    2.4e-07   27.8   0.0    1.2  1  TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
    3.1e-07   27.0   0.0    4.8e-07   26.4   0.0    1.2  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
    3.6e-07   27.1   0.0    5.7e-07   26.5   0.0    1.2  1  TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric
    4.4e-06   23.4   0.0    6.9e-06   22.7   0.0    1.2  1  TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit
    8.8e-06   22.5   0.0    0.00088   15.9   0.0    2.1  2  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
    9.9e-06   22.7   0.0    8.3e-05   19.6   0.2    2.0  2  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
    1.6e-05   20.4   0.0    2.3e-05   19.8   0.0    1.1  1  TIGR03315 Se_ygfK: putative selenate reductase, YgfK subunit
    0.00013   19.1   0.2     0.0013   15.8   0.0    2.1  2  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
    0.00073   16.4   0.0     0.0011   15.9   0.0    1.2  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
     0.0022   14.7   0.1     0.0033   14.1   0.1    1.2  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
     0.0051   13.1   0.0        0.6    6.2   0.0    2.1  2  TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
  ------ inclusion threshold ------
      0.014   11.7   0.0      0.026   10.8   0.0    1.3  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
      0.021   11.7   0.2      0.036   11.0   0.1    1.3  1  TIGR02352 thiamin_ThiO: glycine oxidase ThiO
      0.023   11.3   0.0      0.043   10.4   0.0    1.4  1  TIGR01292 TRX_reduct: thioredoxin-disulfide reductase
      0.024   11.3   0.1       0.14    8.7   0.1    1.9  2  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      0.042   10.7   0.1      0.087    9.6   0.0    1.5  1  TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
      0.044   10.6   0.2       0.13    9.0   0.0    1.7  2  TIGR02023 BchP-ChlP: geranylgeranyl reductase


Domain annotation for each model (and alignments):
>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  679.1   0.0  3.2e-207  5.9e-205       1     453 []      76     535 ..      76     535 .. 0.97

  Alignments for each domain:
  == domain 1    score: 679.1 bits;  conditional E-value: 3.2e-207
    TIGR02731   1 rvaiagaglaglsaakyladaghtpivleardvlggkvaawkdedgdwyetglhiffgaypnllqllkelniedrlqwkehslifaqpdkpgelsrfdvpd.lpaplnvvlailrnndmltweekikfalgllpaivrgqkyveeldkltlsewlkkqgvpervndevfiaaskalnfidpdelsatvvltalnrflqerygsklafldgapperlcqpivdyitsrggevrlnarlkeivlned.gsvkafaladlegkesfevtadayvsalavdilklllpkpwkeleffkkleglegvpvinvhlwfdrklttvdhllfsrsellsvyadmsetckeyadpdksmlelvlapakd.......wigrsdeeiieatlkeleklfpdelkad...ekakllkskvvktprsvykatpgreklrpaqktpienfflagdytkqkylasmegavlsgklaaqaiv 453
                  +vai g+gl+gl++akyl+dagh piv eardvlggkv+aw+d+dgdw+etglhiffgaypn+++l++el+iedrlqwkeh + fa+++ pg+++ f++p  +pap+n+ +ail n +ml+ eeki++  gllp +++gq++++++d+l++++++kk g+per+n+e+fia+ kal+f dpd+ls++v+lta+nrf++e  gs+ afldg+ p+rlc+p+vd+it+rgg+v +  ++  i++++d  svk ++lad++     +v+ad+yvsa++vdi+k l+p+ w+ +++f++l +leg+pvin+++wfdrklt+vd l fsrs+llsvyadms+ c eya + +smlelv+apa++       wi+ sdeeii+atl ele+lfp+e+  d     a++ ks vv+ prsvy +tpgr+k+rp+q++pi+nf +agd+++qkyl+smegavlsgklaa+ i+
  MMETSP1061-20121228|36913_1  76 KVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKVSAWQDADGDWIETGLHIFFGAYPNMMNLFEELDIEDRLQWKEHQMTFAMQELPGQFTSFKFPPnVPAPFNMAAAILTNTEMLSLEEKIRMVPGLLPMLLEGQSFIDAQDELSVAQFMKKYGMPERINEEIFIAMGKALDFTDPDKLSMSVILTAMNRFINEADGSQTAFLDGNQPDRLCKPMVDHITARGGQVLTGKPIASIEVDPDdDSVKCLTLADGS-----TVEADVYVSAMPVDIIKRLVPESWSSIPYFRQLSELEGIPVINLQIWFDRKLTSVDGLCFSRSPLLSVYADMSTCCEEYASDTASMLELVFAPATEavgadrnWIAASDEEIIDATLLELERLFPTEIGPDvpgGGARVTKSTVVRVPRSVYATTPGRNKFRPSQESPISNFVMAGDFALQKYLGSMEGAVLSGKLAAEVIC 535
                  69*************************************************************************************************754********************************************************************************************************************************************975279********99.....9********************************************************************************************9644444444***************************9554569*************************************************************9885 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  256.0   0.0   8.2e-79   1.5e-76       1     474 []      76     535 ..      76     535 .. 0.90

  Alignments for each domain:
  == domain 1    score: 256.0 bits;  conditional E-value: 8.2e-79
    TIGR02732   1 kvaivgaglaglatavelvdaghevelyesrsflggkvgswvdkdgnhiemglhvffgcyanlfkllkkvgaldnlllkehthlfvnkg..geikeldfrfavgapfnglkafft.teqlklvdklrnalalatspivrglvdydgalktirdldkisfaewflskggseaslkrmwdpiayalgfidcenisarcmltifalfaakteasvlrllkgspdkyltkpileyleakgtklylrhkvkeikfekssdgetrvteliiskaeekkvikadayvaacdvpgikkllpkewrkfeefdkikkleavpvatvqlrydgwvtelkdeekrkqlkeaagldnllytadadfscfadlalaspedyykegqgsllqlvltpg......d.pflkksneeivkrvdkqvkelfpssk.......elkllwssvvklaqslyreapgmdlfrpdqktpianfflagsytkqdyidsmegatlsgrkaaaail 474
                  kvai+g gl+gla+a  l daghe  +ye+r  lggkv +w+d dg+ ie glh+ffg+y n+++l++ +  +d+l+ keh  +f  +   g+  ++ f   v apfn   a++t te l+l++k+r     ++ p++   +  +g    i + d++s a+++++ g  e+  + ++  +  al f d +++s   +lt ++ f   ++ s+  +l+g   + l kp++++++a+g+++ + + +  i+++ +  +++ v  l++++++   +++ad yv+a  v  ik+l+p+ w ++ +f ++ +le++pv+ +q+ +d  +t                +d l ++    +s +ad++ +  e+y    + s+l+lv++p       d +++  s+eei+  ++ ++++lfp+         + +++ s+vv++++s+y  +pg++ frp+q++pi+nf +ag ++ q y+ smega lsg++aa++i+
  MMETSP1061-20121228|36913_1  76 KVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKVSAWQDADGDWIETGLHIFFGAYPNMMNLFEELDIEDRLQWKEHQMTFAMQElpGQFTSFKFPPNVPAPFNMAAAILTnTEMLSLEEKIRM--VPGLLPML---L--EG-QSFIDAQDELSVAQFMKKYGMPERINEEIFIAMGKALDFTDPDKLSMSVILTAMNRFINEADGSQTAFLDGNQPDRLCKPMVDHITARGGQVLTGKPIASIEVDPD--DDS-VKCLTLADGS---TVEADVYVSAMPVDIIKRLVPESWSSIPYFRQLSELEGIPVINLQIWFDRKLT---------------SVDGLCFSRSPLLSVYADMS-TCCEEYAS-DTASMLELVFAPAteavgaDrNWIAASDEEIIDATLLELERLFPTEIgpdvpggGARVTKSTVVRVPRSVYATTPGRNKFRPSQESPISNFVMAGDFALQKYLGSMEGAVLSGKLAAEVIC 535
                  79***********************************************************************************98743499999999999**********99858899******95..44555654...3..44.3578999*******9999999999999*********************************************999**************************99766..333.6678888765...799*******************************************9996554...............4678999999********98.55677765.578*******996333333336**********************96522112225789************************************************************997 PP

>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.4   0.0   8.6e-63   1.6e-60       1     428 [.      77     534 ..      77     536 .. 0.88

  Alignments for each domain:
  == domain 1    score: 203.4 bits;  conditional E-value: 8.6e-63
    TIGR03467   1 vvvvGgGlAGLaAAveLaraGvrvtllEarrqlGGRarsfedgslgetiDngqHvllgaytellallarvgaedrlql..erleltfldpegresrLrlsrl.paPlhlakgll.rakglsladklalarlllalkrerl...raaadetvaewLkakgqserlierlwepllvsaLNedperasaklaakVlrdsllakreasdlllprvdLselfvepaarylesrggevrlgtrvreleas..aggiralveaaeetlaadavvlAvpperaasllpe....edlaaklaalesspIttvhlrldrevk.......lpaplvg....lvgglaqWlfdrgelagee...gllavvvSaardledlereeladrivaelrrllpkv.......aeakllkakvikekrAtFaatpglerlRPgartplpnlfLAGDwtatgyPATlEgAvrSGvqAAeav 428
                  v+++GgGl+GLa+A  L++aG +  ++Ear  lGG++++ +d++ +  i  g H+  gay ++++l + ++ edrlq    +  +++ +  g++ +++ ++  paP+++a++ l + + lsl++k++++  ll +  e      a+++ +va+ +k+ g +er+ e+++  +  +   +dp++ s+ ++   + + + ++++ s+  +   +  + + +p+++ +++rgg+v +g  + ++e++  +++++ l+ a+++t++ad +v A+p + +++l+pe      ++ +l++le  p++++ +++dr+++          pl+     +  +  +++ d   +   e     +  +v a r++ + ++ee++d+ + el+rl+p++        +a+++k+ v++  r ++a tpg +  RP +++p+ n ++AGD++   y   +EgAv SG+ AAe +
  MMETSP1061-20121228|36913_1  77 VAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKVSAWQDADGD-WIETGLHIFFGAYPNMMNLFEELDIEDRLQWkeHQMTFAMQELPGQFTSFKFPPNvPAPFNMAAAILtNTEMLSLEEKIRMVPGLLPMLLEGQsfiDAQDELSVAQFMKKYGMPERINEEIFIAMGKALDFTDPDKLSMSVILTAMNR-FINEADGSQTAFLDGNQPDRLCKPMVDHITARGGQVLTGKPIASIEVDpdDDSVKCLTLADGSTVEADVYVSAMPVDIIKRLVPEswssIPYFRQLSELEGIPVINLQIWFDRKLTsvdglcfSRSPLLSvyadMSTCCEEYASDTASML--ElvfAPATEAVGADRNWIAASDEEIIDATLLELERLFPTEigpdvpgGGARVTKSTVVRVPRSVYATTPGRNKFRPSQESPISNFVMAGDFALQKYLGSMEGAVLSGKLAAEVI 534
                  89***********************************999999998.******************************84334455666777888899986655******99976157899*********9999888776656899***************************999889*************9975.889999999999999999***************************986226677777779*************************99888999**********************98888888445544400004444455555554332..2334445557999**************************9999999999**************************************************************988 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.0   0.0   7.8e-16   1.5e-13       2     175 ..      74     262 ..      73     279 .. 0.82
   2 !   10.2   0.0   0.00023     0.044     246     320 ..     305     384 ..     289     457 .. 0.84

  Alignments for each domain:
  == domain 1    score: 48.0 bits;  conditional E-value: 7.8e-16
    TIGR00562   2 kkkvvvvGgGisGLciayalekerpdvelvlvEakdRvGGkiy.TrkesGyllEkGprtlleskegildllkdlGleavlvsidktdkrfvlkn.........kgklvpvPski..selvkflLlslgkklraglmleeirkks....pgkd.eSveefvrrrlGdevlen.liepllsGiYagDvskLSlk 175
                  kkkv+++GgG+sGL+ a +l+    + e +++Ea+d  GGk+   ++ +G  +E G + + +  + +++l  +l +e+ l+  ++ +  f +++             vp P ++  + l ++++lsl++k+r   +l  ++ ++      +d  Sv++f+++    e +++ +  ++ + +   D++kLS+ 
  MMETSP1061-20121228|36913_1  74 KKKVAIIGGGLSGLACAKYLSDA--GHEPIVYEARDVLGGKVSaWQDADGDWIETGLHIFFGAYPNMMNLFEELDIEDRLQW-KEHQMTFAMQElpgqftsfkFPPNVPAPFNMaaAILTNTEMLSLEEKIRMVPGLLPMLLEGqsfiDAQDeLSVAQFMKKYGMPERINEeIFIAMGKALDFTDPDKLSMS 262
                  89*******************99..9999*************967899*********************************9.8888999999888888855422335555554115577899*********9666655554444487566658******98766677776688999999999999999996 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00023
    TIGR00562 246 kvvkgekvtklekrganet...leakdGvkvetdsvvltvpakkaaklLkelsesa..skeldkiqsppvilVnlglPek 320
                  +v +g+++  +e+ +   +   l + dG +ve+d  v ++p   + +l++e   s+   ++l++++  pvi+ ++ + +k
  MMETSP1061-20121228|36913_1 305 QVLTGKPIASIEVDPDDDSvkcLTLADGSTVEADVYVSAMPVDIIKRLVPESWSSIpyFRQLSELEGIPVINLQIWFDRK 384
                  78999********999888777999*************************98554422799***********99988665 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.8e-09   3.4e-07       2      50 ..      78     127 ..      77     144 .. 0.87
   2 ?    2.3   0.0     0.063        12     219     273 ..     290     346 ..     285     362 .. 0.85

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 1.8e-09
    TIGR02734   2 vViGaGlgGLAlAirLaaaGievtvlekrdkpGGRagvleed.GfrfDtG 50 
                   +iG+Gl+GLA+A  L  aG+e  v e+rd +GG+ +++++  G  + tG
  MMETSP1061-20121228|36913_1  78 AIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKVSAWQDAdGDWIETG 127
                  79*************************************97436555555 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.063
    TIGR02734 219 alvealaklaedlggelrlnaeveeieteg..erataveledgerleadavvsnaDl 273
                  +l + ++++++  gg++ + ++  +ie++   ++++ ++l+dg+++ead+ vs+  +
  MMETSP1061-20121228|36913_1 290 RLCKPMVDHITARGGQVLTGKPIASIEVDPddDSVKCLTLADGSTVEADVYVSAMPV 346
                  67889***************9999999876569999*****************9765 PP

>> TIGR01317  GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   1.3e-09   2.4e-07     143     182 ..      74     113 ..      54     115 .. 0.89

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 1.3e-09
    TIGR01317 143 GkkvavvGsGPaGlaaadqlnraGhtvtvferedrvGGll 182
                   kkva++G G +Gla+a+ l+ aGh+  v+e  d  GG +
  MMETSP1061-20121228|36913_1  74 KKKVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKV 113
                  589**********************************976 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   2.5e-09   4.8e-07     373     420 ..      68     115 ..      48     122 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 2.5e-09
    TIGR03997 373 lkkarrrkkvlvvGgGPaGleaaataarrGhrvtllereeelGGqvkl 420
                   ++++++kkv ++GgG +Gl+ a+  +  Gh+ +++e  + lGG+v +
  MMETSP1061-20121228|36913_1  68 TTTPAQKKKVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKVSA 115
                  4578889**************************************986 PP

>> TIGR01316  gltA: glutamate synthase (NADPH), homotetrameric
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0     3e-09   5.7e-07     124     172 ..      65     113 ..      51     116 .. 0.86

  Alignments for each domain:
  == domain 1    score: 26.5 bits;  conditional E-value: 3e-09
    TIGR01316 124 eeeekapstkkkvaviGaGpaGlavaselakkGhevtvfealhkpGGvl 172
                   +e ++p+ kkkva+iG G +Gla+a+ l+ +Ghe  v+ea +  GG +
  MMETSP1061-20121228|36913_1  65 RDETTTPAQKKKVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKV 113
                  346788999********************************99888865 PP

>> TIGR01318  gltD_gamma_fam: glutamate synthase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   3.7e-08   6.9e-06     139     179 ..      72     112 ..      55     115 .. 0.88

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 3.7e-08
    TIGR01318 139 ktgkrvaviGaGpaGlacadvlaraGvkvvvfdrypeiGGl 179
                   ++k+va+iG+G +Glaca  l+ aG + +v++  + +GG 
  MMETSP1061-20121228|36913_1  72 AQKKKVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGK 112
                  5789******************************9999995 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   4.7e-06   0.00088       2      44 ..      75     117 ..      74     123 .. 0.93
   2 ?    4.4   0.0     0.014       2.7     234     315 ..     291     369 ..     283     379 .. 0.86

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.7e-06
    TIGR02733   2 ksvvviGaGiaGltaaallakrGlevtlleaaaqvGGCastfk 44 
                  k+v +iG+G++Gl++a  l+  G e  ++ea  ++GG  s+++
  MMETSP1061-20121228|36913_1  75 KKVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKVSAWQ 117
                  789**********************************988775 PP

  == domain 2    score: 4.4 bits;  conditional E-value: 0.014
    TIGR02733 234 lsdrlvealkkdggelllgqrveaietkeekaeakvvvdsrkkekeevkaddvvanlpaqsllelleeaalskgyrkrlkkl 315
                  l   +v+ +  +gg++l+g+ + +ie++ +  ++k  +     +  +v+ad  v ++p+  + +l++e+  s  y ++l++l
  MMETSP1061-20121228|36913_1 291 LCKPMVDHITARGGQVLTGKPIASIEVDPDDDSVKCLTLA---DGSTVEADVYVSAMPVDIIKRLVPESWSSIPYFRQLSEL 369
                  5566789999*****************9999888877766...6678999999*********9**99999998998888776 PP

>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.2   4.5e-07   8.3e-05       1      40 [.      76     115 ..      76     119 .. 0.91
   2 ?    0.3   0.0      0.32        60     146     202 ..     287     347 ..     286     369 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 4.5e-07
    TIGR03197   1 kvavIGaGiAgaalalsLarrGvqvtllekdeklaqgASg 40 
                  kva+IG+G++g+a+a+ L+ +G++  ++e+++ l+ + S+
  MMETSP1061-20121228|36913_1  76 KVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKVSA 115
                  69****************************9998887776 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.32
    TIGR03197 146 sPpelvkallakaki.elklhfnteitslerdaeg...WqllsengevlaasvvVlAngaq 202
                  +P +l+k ++++ ++ + ++ +++ i+s+e d +      l+ ++g +++a+v V A+  +
  MMETSP1061-20121228|36913_1 287 QPDRLCKPMVDHITArGGQVLTGKPIASIEVDPDDdsvKCLTLADGSTVEADVYVSAMPVD 347
                  699***********99999*********998555444344555999999999999997665 PP

>> TIGR03315  Se_ygfK: putative selenate reductase, YgfK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   1.2e-07   2.3e-05     517     577 ..      54     114 ..      43     116 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 1.2e-07
    TIGR03315 517 lekaydeykeklekpqlksekhkvaviGaGPaGlsagyflaraGlpvtvfekkekagGvvk 577
                    +a +++++  +++ + ++k+kva+iG+G +Gl+ + +l+ aG++  v+e ++  gG v+
  MMETSP1061-20121228|36913_1  54 WREAAEKSQKFRDETTTPAQKKKVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKVS 114
                  4455666666667777888999********************************9999886 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.2e-06    0.0013      22      59 ..      75     112 ..      62     117 .. 0.89
   2 ?    0.7   0.0      0.29        53     234     252 ..     520     537 ..     507     539 .. 0.78

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 7.2e-06
    TIGR00292  22 sDviivGaGpsGLtaayylakeglkvvvlerklaiGGG 59 
                    v+i+G+G sGL++a+yl+ +g   +v e +  +GG 
  MMETSP1061-20121228|36913_1  75 KKVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGK 112
                  679***************************99999985 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.29
    TIGR00292 234 ifGgmllsGkkvaelilek 252
                  +  g +lsGk +ae+i +k
  MMETSP1061-20121228|36913_1 520 ME-GAVLSGKLAAEVICDK 537
                  43.4479*********876 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.6e-06    0.0011       4      73 ..      77     145 ..      74     182 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.6e-06
    TIGR00031   4 yiivGaGlsGivlaeilaklnkrvlvvekrnhiGGncydevdekgllvhkyGphifhtdnkkvldyisdf 73 
                  + i+G GlsG  +a+ l++ +++ +v e r+ +GG +   +d +g  + + G hif     ++++  +++
  MMETSP1061-20121228|36913_1  77 VAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKVSAWQDADGDWI-ETGLHIFFGAYPNMMNLFEEL 145
                  679********************************9877777665444.679999998888888776655 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   1.8e-05    0.0033       1      38 [.      77     114 ..      77     116 .. 0.96

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.8e-05
    TIGR00275   1 viiiGgGaaGlmaAitaaeegakVlllEknkkigkKll 38 
                  v+iiGgG +Gl +A  ++ +g++ +++E+++ +g K++
  MMETSP1061-20121228|36913_1  77 VAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKVS 114
                  79*********************************996 PP

>> TIGR02374  nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0    0.0032       0.6     138     170 ..      72     104 ..      42     112 .. 0.83
   2 !    4.6   0.0    0.0096       1.8     190     237 ..     297     345 ..     280     356 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.0032
    TIGR02374 138 krtkkaaviGgGLLGLeaaraLknlGldvsvie 170
                   + kk a+iGgGL GL  a+ L + G +  v e
  MMETSP1061-20121228|36913_1  72 AQKKKVAIIGGGLSGLACAKYLSDAGHEPIVYE 104
                  466888****************99998876655 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0096
    TIGR02374 190 relekkGltvlleketvei.vkesvekaerlrfkDGssleadlvvlaaG 237
                   ++  +G +vl++k   +i v+ + + ++ l ++DGs++ead+ v a  
  MMETSP1061-20121228|36913_1 297 DHITARGGQVLTGKPIASIeVDPDDDSVKCLTLADGSTVEADVYVSAMP 345
                  567788889999887666523334599****************998865 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   0.00014     0.026     365     419 ..      67     121 ..      41     129 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 0.00014
    TIGR03996 365 eaeraatpgdvlvvGGGpaGleaarvlavrGhrvtlaeasarlGGmvriaargdG 419
                  e+   a   +v ++GGG +Gl  a+ l+ +Gh+  + ea   lGG v +    dG
  MMETSP1061-20121228|36913_1  67 ETTTPAQKKKVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVLGGKVSAWQDADG 121
                  444445556899**********************************998877666 PP

>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   0.00019     0.036       1      31 [.      77     107 ..      77     117 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00019
    TIGR02352   1 vlviGgGviGlsvAveLakrghkvtllekde 31 
                  v++iGgG+ Gl+ A +L+++gh+  + e ++
  MMETSP1061-20121228|36913_1  77 VAIIGGGLSGLACAKYLSDAGHEPIVYEARD 107
                  79********************988888764 PP

>> TIGR01292  TRX_reduct: thioredoxin-disulfide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.0   0.00023     0.043       2      38 ..      76     113 ..      75     120 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 0.00023
    TIGR01292   2 dviiiGaGpaGltaaiYaaranlktlliegkea.ggql 38 
                  +v+iiG+G +Gl+ a Y + a+ +++++e  +  gg++
  MMETSP1061-20121228|36913_1  76 KVAIIGGGLSGLACAKYLSDAGHEPIVYEARDVlGGKV 113
                  799*************************9776525555 PP

>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.1   0.00078      0.14       2      22 ..      77      97 ..      76     124 .. 0.84
   2 ?   -0.2   0.0       0.4        74     112     160 ..     294     343 ..     286     344 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00078
    TIGR01988  2 ivIvGgGlvGlalAlaLassa 22
                 ++I+GgGl Gla+A  L++ +
  MMETSP1061-20121228|36913_1 77 VAIIGGGLSGLACAKYLSDAG 97
                 89***************9766 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.4
    TIGR01988 112 aLlealqekknkvtllapaeveeleresdav.eltlsdgetleakLlvgA 160
                   +   ++++ ++v +  p++  e+  ++d+v  ltl+dg+t+ea++ v A
  MMETSP1061-20121228|36913_1 294 PMVDHITARGGQVLTGKPIASIEVDPDDDSVkCLTLADGSTVEADVYVSA 343
                  5555666665566666677777777666555169************9987 PP

>> TIGR03378  glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00047     0.087       3      28 ..      77     102 ..      76     107 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00047
    TIGR03378   3 viiiGgGlaGlscalrlaeaGkktai 28 
                  v+iiGgGl+Gl+ca  l +aG+  ++
  MMETSP1061-20121228|36913_1  77 VAIIGGGLSGLACAKYLSDAGHEPIV 102
                  79******************998665 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   0.0   0.00071      0.13       2      30 ..      76     104 ..      75     110 .. 0.91
   2 ?   -1.8   0.0       1.4   2.6e+02     279     303 ..     518     539 ..     495     550 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00071
    TIGR02023   2 dvlviGggpsGaaaaetLakagieville 30 
                  +v++iGgg sG a a+ L  ag+e i+ e
  MMETSP1061-20121228|36913_1  76 KVAIIGGGLSGLACAKYLSDAGHEPIVYE 104
                  79**********************99877 PP

  == domain 2    score: -1.8 bits;  conditional E-value: 1.4
    TIGR02023 279 asGeGiyyamksGklaaeaivealk 303
                   s eG   a+ sGklaae i ++  
  MMETSP1061-20121228|36913_1 518 GSMEG---AVLSGKLAAEVICDKAT 539
                  55555...899*******9988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (586 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                      146  (0.0355924); expected 82.0 (0.02)
Passed Vit filter:                        63  (0.0153584); expected 4.1 (0.001)
Passed Fwd filter:                        22  (0.00536324); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              22  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.65
# Mc/sec: 1189.93
//
Query:       MMETSP1061-20121228|36932_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|36935_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1469.10
//
Query:       MMETSP1061-20121228|36964_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 365.97
//
Query:       MMETSP1061-20121228|36974_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1661.86
//
Query:       MMETSP1061-20121228|36999_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 339.40
//
Query:       MMETSP1061-20121228|37003_1  [L=428]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (428 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.30
# Mc/sec: 1883.04
//
Query:       MMETSP1061-20121228|37018_1  [L=535]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-06   23.3   0.0    3.8e-06   22.8   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    4.3e-05   20.9   0.0    0.00014   19.2   0.0    1.8  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.8e-09   3.8e-06      87     186 ..     182     269 ..     172     307 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.8e-09
    TIGR03903  87 qvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                   v  +l   h++ v+ RDLkP+n+   + + +    + DFG +       +    +   ++ev Gs  Y +Pe   g  +   sD+Y++G++++e  t +
  MMETSP1061-20121228|37018_1 182 GVSKGLEYLHSQRVIFRDLKPDNVGFRKDG-T--PVIFDFGFAR------E---VHTLESQEVAGSLRYMSPEMAFGLDPSLPSDVYSFGVLMFELCTLE 269
                  566788899**************9886654.3..479****853......3...2334568********************************9977755 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.19     4e+02       3      57 ..      53     112 ..      51     116 .. 0.76
   2 !   19.2   0.0     7e-08   0.00014      75     145 ..     163     230 ..     145     238 .. 0.77

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.19
    TIGR03724   3 kkGAEaeiylge.....flglkavvKeRvkKsYrhpelDeklrkeRtrkEarllseakka 57 
                   kGA +e+y+       f+++k+ +K+  +K   ++e D  l +    +Ea+lls++k+ 
  MMETSP1061-20121228|37018_1  53 GKGAFSEVYQVCidipeFYDKKYALKHLSPKITDKNEGDFDLAAIDLATEANLLSRLKHD 112
                  577777777664445558999999999999988888888888888899999999888765 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 7e-08
    TIGR03724  75 vmeyiegkklkdlleekelellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkkskevedk 145
                  +   i+++k+ + ++    +++  v + +  lH++++++ Dl + N+ + kd++ ++ DfG ++  +++e++
  MMETSP1061-20121228|37018_1 163 LSGSISSSKMMERIK----NIALGVSKGLEYLHSQRVIFRDLKPDNVGFrKDGTPVIFDFGFAREVHTLESQ 230
                  444444444444444....588889999999*****************9446778999******99888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (535 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2434.97
//
Query:       MMETSP1061-20121228|37041_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|37042_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|37043_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 257.03
//
Query:       MMETSP1061-20121228|37079_1  [L=390]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-94  314.1   0.0    6.9e-94  313.6   0.0    1.1  1  TIGR00604 rad3: DNA repair helicase (rad3)
  ------ inclusion threshold ------
      0.044    9.8   0.0       0.08    8.9   0.0    1.3  2  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase


Domain annotation for each model (and alignments):
>> TIGR00604  rad3: DNA repair helicase (rad3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  313.6   0.0   3.4e-97   6.9e-94     419     700 ..      78     359 ..      61     369 .. 0.96

  Alignments for each domain:
  == domain 1    score: 313.6 bits;  conditional E-value: 3.4e-97
    TIGR00604 419 aenlilkfllLdpSialkpvlerarsvilasGTlsPldaflkiLslnavlekslehvlkrenlltlivtrgsdqvalestfekrkdpslvrnlaellvelikiiPdGivvFfpSYsyleevvsvwkengileelekkkkvfvEtkda.eetsdilerYkkavsegrGavLlaVvgGkvSEGidFsddlgraVilvGiPyPeltekrklkarleflkdkkeeresefleldamravnQaiGRviRhkdDygsivLlDkRyarsskrkkLpkWiqetisssdlnl 700
                   + ++l+  +L+pS a+kp++er+  v+l+s TlsP++ ++k+L +++v+++s+ ++  r ++ +l+++rgsdq  +++ +++r     +rn++++lv+l++ iPdG+vv+fpSYsy+e ++  w  +gi+ e+ + k+vfvEtkd+ e ++ +l++Y++++++grG+v ++V++G +SE i F+ ++graV+++GiPy  +t +r+++arle+ ++++ +re+++l++da r+v+ + GR+iR+k+D  ++v++D+R+ +++kr+kLp W+ + +++ + +l
  MMETSP1061-20121228|37079_1  78 ESAMMLQVACLNPSLAMKPIFERFGTVLLTSSTLSPISYYPKLLRFEPVVAESIPMSTIRPCVNPLMISRGSDQLVMSTGYKERFTMGCIRNYGKMLVDLVSSIPDGVVVYFPSYSYMEMLICEWDATGIMREMTEWKLVFVETKDNlELNTIALDNYRASCDTGRGGVFFSVARGYISEAIPFDLHYGRAVVMIGIPY-DYTLSRVVRARLEYIQTHFDIREQDYLTFDAVRQVAKCFGRAIRSKTDCSVLVFADSRFHKNDKRTKLPGWVGQFLTEGQQDL 359
                  56788999*******************************************************************************************************************************************6667889*********************************************.9**************************************************************************99988776 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.0      0.35   7.3e+02     627     645 ..      94     112 ..      83     131 .. 0.77
   2 ?    8.9   0.0   3.9e-05      0.08     777     854 ..     258     335 ..     253     345 .. 0.88

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 0.35
    TIGR01407 627 aerllpkkksvilvsaTLk 645
                  ++ +++++  v+l+s+TL+
  MMETSP1061-20121228|37079_1  94 MKPIFERFGTVLLTSSTLS 112
                  6678999999*******98 PP

  == domain 2    score: 8.9 bits;  conditional E-value: 3.9e-05
    TIGR01407 777 GvDlpgnelkilviarLPFanPkepLvkkklqkleeEgknpFkdyalPkAilrlrQalGRliRreedrgsilvlDkRl 854
                   + ++ +  + +v+  +P+    + +v++ l++ +  +    +dy   +A+ ++   +GR iR++ d ++++  D R 
  MMETSP1061-20121228|37079_1 258 AIPFDLHYGRAVVMIGIPYDYTLSRVVRARLEYIQTHFDIREQDYLTFDAVRQVAKCFGRAIRSKTDCSVLVFADSRF 335
                  5667777778888889999999999999999999999999999********************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (390 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1715.86
//
Query:       MMETSP1061-20121228|37097_1  [L=35]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (35 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|37105_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|37124_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1233.81
//
Query:       MMETSP1061-20121228|37118_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        7.1    5.1   8.3          2    6.9   0.0    3.2  3  TIGR02864 spore_sspO: small, acid-soluble spore protein O


Domain annotation for each model (and alignments):
>> TIGR02864  spore_sspO: small, acid-soluble spore protein O
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   0.0    0.0005         2      10      43 ..     282     313 ..     280     314 .. 0.87
   2 ?    0.5   0.9     0.049     2e+02      38      47 ..     398     407 ..     393     409 .. 0.78
   3 ?   -0.7   0.2      0.12   4.7e+02       7      23 ..     442     458 ..     439     479 .. 0.65

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0005
    TIGR02864  10 ingmnaakaqGkgagqfdeefanepLtaaerqNN 43 
                  i +  aa+++G++a      f   p t +e+qNN
  MMETSP1061-20121228|37118_1 282 IAITAAAAVKGDLAD--GMAFITQPGTYEEQQNN 313
                  567889********9..6777777*********9 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.049
    TIGR02864  38 aerqNNKKrK 47 
                    r  NKKrK
  MMETSP1061-20121228|37118_1 398 SIRRKNKKRK 407
                  55889****9 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.12
    TIGR02864   7 nhsingmnaakaqGkga 23 
                  n+s    + a+ qG+g 
  MMETSP1061-20121228|37118_1 442 NESYETVDTAATQGNGN 458
                  67778889999999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.35
# Mc/sec: 1851.62
//
Query:       MMETSP1061-20121228|37150_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 515.96
//
Query:       MMETSP1061-20121228|37143_1  [L=488]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.3e-143  475.0   0.0   5.8e-143  474.6   0.0    1.0  1  TIGR01268 Phe4hydrox_tetr: phenylalanine-4-hydroxylase
   2.6e-137  456.0   0.0     9e-137  454.3   0.0    1.7  1  TIGR01270 Trp_5_monoox: tryptophan 5-monooxygenase
   1.4e-130  434.2   0.0   1.8e-130  433.8   0.0    1.0  1  TIGR01269 Tyr_3_monoox: tyrosine 3-monooxygenase
    6.5e-44  147.9   0.0    1.1e-43  147.1   0.0    1.3  1  TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR01268  Phe4hydrox_tetr: phenylalanine-4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  474.6   0.0  5.6e-146  5.8e-143      10     408 ..      71     477 ..      64     485 .. 0.91

  Alignments for each domain:
  == domain 1    score: 474.6 bits;  conditional E-value: 5.6e-146
    TIGR01268  10 vnensaklslifslkeeagalaevlklfkekdvnlthiesrpskskegeyeffveldeksd....ekledvieslrekaevlvnelsrdkkedkdavpwfprkikeldrfanqilsygaeldadhpgfkdavyrarrkqfadiafnykhgepiprveyteeeietwrtvfkeltklykthackeynhvfpllqencgfrednipqledvsdflkdctgfrlrpvagllssrdflaglafrvfhstqyirhkskpkytpepdvchellghvplfadvefaqfsqeiglaslgapdeyieklatlywftvefglckq......dgelkaygagllssfgelqyclsd......kpelkdlepektavtkypitefqplyflaesfedakeklkefaatiprpfsvrynaytqrvevl 408
                   +e+ + +sl++ l +++g l ++l+ f + dvn+  iesrpsk  +   +ffv+++ + +    ++l+++i++l++     v++l +    d++ v wfpr+++eld  an++l  g +l+adhpgf+d++yr+rr+ +a  a+n++  +pi ++eyte+ei+ w  v+  + +l+++ ackey h + l+ +nc ++   ipq +d+s+fl+  t f+lrpvagllssrdfl gla r f +tqyirh+skp ytpepd+chellgh p+fa++ f +fsqeiglaslga de iekla  ywf+vefglc++      ++++kaygagllssfgel++++ +      kp++++ +p ++a++++pit +qplyf+a+s++dak k++++ + +prpf  +yn++tq+v + 
  MMETSP1061-20121228|37143_1  71 GDEEPNLTSLLMELPDRVGVLHDALRFFWKYDVNIRRIESRPSKFGK--IDFFVDVEGAVSddgdQRLNNLISTLKDFG---VEKLLT---LDEKEVAWFPRHVSELDMVANRVLDAGVDLEADHPGFHDKTYRERRQELATFAMNHRWDKPIVEIEYTENEIKCWTAVWDRMENLWDKYACKEYLHSLDLMIKNCNYNRTSIPQQNDISEFLEATTDFKLRPVAGLLSSRDFLNGLAHRTFFCTQYIRHHSKPLYTPEPDICHELLGHAPMFANKDFCDFSQEIGLASLGASDEDIEKLARCYWFSVEFGLCREfdaqtgEDRMKAYGAGLLSSFGELEHAVGEngddeaKPQIEPWDPSRAAMQEFPITTYQPLYFVADSLSDAKIKMRKHCEGLPRPFFAQYNPHTQTVIID 477
                  45667779***********************************9877..999999987654112255666666666544...555443...2334589***********************************************************************************************************************************************************************************************************************954333446789*****************9754555669**********************************************************99553 PP

>> TIGR01270  Trp_5_monoox: tryptophan 5-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  454.3   0.0  8.8e-140    9e-137      26     440 ..      72     481 ..      54     485 .. 0.90

  Alignments for each domain:
  == domain 1    score: 454.3 bits;  conditional E-value: 8.8e-140
    TIGR01270  26 eenverlsiivslkkevedlakilkilqdkhinilhlesrklkkatsktldvlvdvevekee.leevlellksevdvlevtsvdrltlakeksleagsdtatekvewfpkkisdldkvanrvlmyGseldadhpGfkdkeyrkrrkmfadlalnykhGepiprveyteeekktwGtvyrelkrlykkhavkefldnlellekkcGyrednipqledvskflkaktGfslrpvaGylsardflsGlafrvfyctqyvrhsadpfytpepdtvhellGhvplladpsfaqfsqeiGlaslGaseedikklatlyfftvefGlckqd.....deqlkvyGaGllssvaelqhal......sgkakikkfdpekvveqeclittfqnayfytesfeeakeklreftktikrpfgvrynpytesvevlknak 440
                  +e+ +  s++++l  +v+ l+ +l+ + + ++ni+ +esr++k    k +d +vdve    +  ++ l+ l s+++   v++   lt             + ++v wfp+++s+ld vanrvl  G +l+adhpGf dk yr+rr+ +a +a+n+++ +pi ++eyte+e+k w  v+ ++++l+ k a+ke+l+ l+l+ k+c y+   ipq +d+s+fl a t f+lrpvaG ls+rdfl Gla+r f+ctqy+rh++ p+ytpepd +hellGh p++a+ +f  fsqeiGlaslGas+edi+kla +y+f+vefGlc++      ++++k+yGaGllss +el+ha+      ++k +i ++dp++   qe  itt+q  yf+++s+ +ak k+r+ ++ + rpf  +ynp+t++v + ++ k
  MMETSP1061-20121228|37143_1  72 DEEPNLTSLLMELPDRVGVLHDALRFFWKYDVNIRRIESRPSKFG--K-IDFFVDVEGAVSDdGDQRLNNLISTLKDFGVEKL--LT------------LDEKEVAWFPRHVSELDMVANRVLDAGVDLEADHPGFHDKTYRERRQELATFAMNHRWDKPIVEIEYTENEIKCWTAVWDRMENLWDKYACKEYLHSLDLMIKNCNYNRTSIPQQNDISEFLEATTDFKLRPVAGLLSSRDFLNGLAHRTFFCTQYIRHHSKPLYTPEPDICHELLGHAPMFANKDFCDFSQEIGLASLGASDEDIEKLARCYWFSVEFGLCREFdaqtgEDRMKAYGAGLLSSFGELEHAVgengddEAKPQIEPWDPSRAAMQEFPITTYQPLYFVADSLSDAKIKMRKHCEGLPRPFFAQYNPHTQTVIIDRQIK 481
                  3445678999*******************************9976..4.88*****977654145555555544444444333..33............345689*************************************************************************************************************************************************************************************************************************9767777899*******************55443334568*********************************************************98766555 PP

>> TIGR01269  Tyr_3_monoox: tyrosine 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  433.8   0.0  1.8e-133  1.8e-130      31     434 ..      71     482 ..      55     486 .. 0.90

  Alignments for each domain:
  == domain 1    score: 433.8 bits;  conditional E-value: 1.8e-133
    TIGR01269  31 eeaekallnaalvvrskkisalsrilkvietfkakvqhletrtsrkek.dadvdyevliklevteanlsllieslrrsssisainlladkevkadwfPkkiseldkcqhlltkfePdldtdhPGfadkvyrqrrkaiaeiafrykyGdpiPeveyteeeietwrevfktlkdlaakracaeyleafqllekecnyseesiPqlqevseflkkrtGfrlrPvaGllsardflaslafrvfqctqyirhassPmhtPePdcihellGhvPlladrsfaqfsqeiGlaslGaseeeieklstlywftvefGlcke......ngevkayGaGllssyGelvhalsd......ksekrefepeaaavqpyqdqeyqkiyfvaesfedakeklrryvatisrpfevrfdPitesvevldsvsk 434
                   ++e  l ++ + +   ++  l+ +l+ + +++++++ +e+r+s+  k d  vd e  +  +     l +li+ l+    +  ++ll+ +e++  wfP+++seld     +     dl+ dhPGf+dk yr+rr+++a  a+++++ +pi e+eyte+ei+ w  v+ ++++l  k ac+eyl+++ l+ k+cny+ +siPq +++sefl+ +t f+lrPvaGlls+rdfl  la r f ctqyirh+s+P++tPePd  hellGh P++a++ f +fsqeiGlaslGas+e+iekl+  ywf+vefGlc+e      ++++kayGaGllss+Gel+ha+ +      k++ ++++p+ aa+q +    yq++yfva+s+ dak k+r++ +++ rpf ++++P+t++v +  ++++
  MMETSP1061-20121228|37143_1  71 GDEEPNLTSLLMELPD-RVGVLHDALRFFWKYDVNIRRIESRPSKFGKiDFFVDVEGAVSDDG-DQRLNNLISTLKD---FGVEKLLTLDEKEVAWFPRHVSELDMVANRVLDAGVDLEADHPGFHDKTYRERRQELATFAMNHRWDKPIVEIEYTENEIKCWTAVWDRMENLWDKYACKEYLHSLDLMIKNCNYNRTSIPQQNDISEFLEATTDFKLRPVAGLLSSRDFLNGLAHRTFFCTQYIRHHSKPLYTPEPDICHELLGHAPMFANKDFCDFSQEIGLASLGASDEDIEKLARCYWFSVEFGLCREfdaqtgEDRMKAYGAGLLSSFGELEHAVGEngddeaKPQIEPWDPSRAAMQEFPITTYQPLYFVADSLSDAKIKMRKHCEGLPRPFFAQYNPHTQTVIIDRQIKR 482
                  4445555555555554.799************************9877244788888776554.5679999***999...888999999999**************************************************************************************************************************************************************************************************************************984444445679******************752222224566899******************************************************87766655 PP

>> TIGR01267  Phe4hydrox_mono: phenylalanine-4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  147.1   0.0   1.1e-46   1.1e-43       9     223 ..     218     447 ..     212     467 .. 0.89

  Alignments for each domain:
  == domain 1    score: 147.1 bits;  conditional E-value: 1.1e-46
    TIGR01267   9 dryseeehavwatlidrqlkllegracdeyldGvekl....gldadripdleevneklraltGwkivavpglipadvffehlanrrfpvttflrtpeeldylqepdvfhdlfGhvpllsnpvfadfleayGkkgvkakalgaallarlywytvefGlvet.....aag.lriyGaGilsskkelvyal.....eskeplrvafdllevmrtryridklqkayfvlpslkr 223
                  ++y+e+e + w+++ dr   l ++ ac+eyl+ ++ +    + +   ip+ ++++e l+a+t +k+  v gl+    f++ la r f  t+++r   +  y  epd+ h+l+Gh p+++n  f df +  G  ++ a+ ++ + lar yw++vefGl ++      ++ +++yGaG+lss+ el +a+     + ++p+  ++d+ ++   ++ i ++q++yfv +sl  
  MMETSP1061-20121228|37143_1 218 IEYTENEIKCWTAVWDRMENLWDKYACKEYLHSLDLMikncNYNRTSIPQQNDISEFLEATTDFKLRPVAGLLSSRDFLNGLAHRTFFCTQYIRHHSKPLYTPEPDICHELLGHAPMFANKDFCDFSQEIGLASLGASDEDIEKLARCYWFSVEFGLCREfdaqtGEDrMKAYGAGLLSSFGELEHAVgengdDEAKPQIEPWDPSRAAMQEFPITTYQPLYFVADSLSD 447
                  579****************************9987542211566677**************************************************************************************************************8653222122269*****************955333344677889************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (488 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.32u 0.14s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 1695.02
//
Query:       MMETSP1061-20121228|37152_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 465.44
//
Query:       MMETSP1061-20121228|37161_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|37181_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 446.73
//
Query:       MMETSP1061-20121228|37173_1  [L=819]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.9e-13   45.4   0.0    9.2e-13   44.7   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    5.4e-08   30.4   0.0    2.3e-05   21.7   0.0    2.3  2  TIGR03896 cyc_nuc_ocin: bacteriocin-type transport-associated protein
    1.3e-07   29.2   3.8      1e-06   26.2   0.0    3.5  4  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.7   0.0   6.8e-16   9.2e-13      13     186 ..     522     683 ..     514     686 .. 0.88

  Alignments for each domain:
  == domain 1    score: 44.7 bits;  conditional E-value: 6.8e-16
    TIGR03903  13 edaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadG..aLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                  + +  ++++     Re+ + ++++hP ++ L++s +  d  l+ +  +v+G  lr+ + ++    L+ ++     + +L++l+  h++  v+RDLk +n+++ +        ++D G +  +p+              + G+P + aPe + +      +D+++ G+++ e L G 
  MMETSP1061-20121228|37173_1 522 KRELIQQHQAEGVIRETRIMEKMNHPFVMGLVNSQQDSD-CLYLMMKLVQGGELRQQMRNEHrpYLAEKDAKFYAACMLEGLSYMHRRSFVYRDLKGENVLLDKD---GYCVIVDLGFAKYVPDKTF----------TFCGTPIFIAPEVVMNKGHDKSADIWSLGVMIYEMLFGT 683
                  44447889999999******************9987776.******************9986325888888888999************************9655...56899******99998543..........579*******************************99986 PP

>> TIGR03896  cyc_nuc_ocin: bacteriocin-type transport-associated protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   1.7e-08   2.3e-05       9      96 ..      89     167 ..      81     175 .. 0.86
   2 !    5.3   0.0    0.0017       2.3     143     190 ..     188     235 ..     169     293 .. 0.77

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 1.7e-08
    TIGR03896   9 esreiaaettLieeGkaaddLfilldGaitvtikqeeddaltravelaeLsrGelvGemslleerppvatikaveksrllsipveeLa 96 
                  e+   +++ t+i +G + d L+i+++G++   +  e++++           rG +vGe +ll + p +at+ a+ +  + ++ +e + 
  MMETSP1061-20121228|37173_1  89 EKHSAKQGETVITQGDTGDYLYIVKEGTVRFLVDGEDQGSA---------GRGTVVGELALLYDCPRAATVLAETDCEFYRVSQETFR 167
                  5566678899******************9999999988888.........89***********************9999999888765 PP

  == domain 2    score: 5.3 bits;  conditional E-value: 0.0017
    TIGR03896 143 LlilgeleekDvaWlaksGkkkklsagtvlikegeavdaLYilLaGea 190
                    ++ +l ++ +  la    +k++  g++l++ g+ +d +Y +  G++
  MMETSP1061-20121228|37173_1 188 TNLFQDLPDHLIRELASCMFQKEFKKGDILLEKGDMLDEIYFVQSGHI 235
                  4577778888888888888889999******************99985 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.36   4.9e+02      98     115 ..     326     343 ..     300     346 .. 0.83
   2 ?   -0.6   0.1      0.12   1.7e+02       2      41 ..     443     486 ..     442     496 .. 0.62
   3 !   26.2   0.0   7.5e-10     1e-06      38     168 ..     528     670 ..     517     684 .. 0.77
   4 ?    1.3   0.0     0.032        43     154     197 ..     701     742 ..     688     743 .. 0.79

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.36
    TIGR03724  98 evGelvgklHkagivhgD 115
                  evGe+v +lH+  +  gD
  MMETSP1061-20121228|37173_1 326 EVGEMVKRLHHFTLEPGD 343
                  79********98776666 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.12
    TIGR03724   2 ikkGAEa.eiylgeflglkavvK..eRvkKsYrhpel.Deklrk 41 
                  i++G+E  ++++ ++ +lk v+    R+ K Yr+++l D+++ k
  MMETSP1061-20121228|37173_1 443 IARGSETlHLRKLTMKDLKDVIYdpLRLGKDYRKNRLyDKHVTK 486
                  56777762355555666665554225999*****9994555544 PP

  == domain 3    score: 26.2 bits;  conditional E-value: 7.5e-10
    TIGR03724  38 klrkeRtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.........ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk..skevedkavDlhvlkrslestheelaeeli 168
                  + ++e +++E r+++++++  v   v  + d +   ++m+ ++g +l++ +++++           ++  + e ++ +H+  +v+ Dl  +N+++ kd+ ++++D+G +k+  +k+    ++ + +  ++++   ++++ +++
  MMETSP1061-20121228|37173_1 528 QHQAEGVIRETRIMEKMNHPFVMGLVNSQQDSDCLYLMMKLVQGGELRQQMRNEHRpylaekdakFYAACMLEGLSYMHRRSFVYRDLKGENVLLdKDGYCVIVDLGFAKYvpDKTFTFCGTPIFIAPEVVMNKGHDKSADIW 670
                  446777899********99999999999999999*****************9987788898887545566778899*******************446677899*****9955555555555555555555555555555555 PP

  == domain 4    score: 1.3 bits;  conditional E-value: 0.032
    TIGR03724 154 rslestheelaeelieaflegYkeeveeekavlekvkeiesrgR 197
                  r +   + +++  + +a +++Y+++ +e+k++++k+  i  r+R
  MMETSP1061-20121228|37173_1 701 RRIA--KGKFQRPVNQASVDAYSRTSQEAKDLIKKILVIDVRKR 742
                  5444..4555677888999****************999999988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (819 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.43u 0.15s 00:00:00.57 Elapsed: 00:00:00.39
# Mc/sec: 2771.77
//
Query:       MMETSP1061-20121228|37202_1  [L=190]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00054   17.3   0.3    0.00054   17.3   0.2    1.8  2  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.1     0.027   1.1e+02     132     163 ..      19      50 ..       5      72 .. 0.66
   2 !   17.3   0.2   1.3e-07   0.00054     195     264 .]      97     166 ..      90     166 .. 0.94

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.027
    TIGR00950 132 lgllsgisfAlgtvlakrlvkkeglellqftg 163
                    ll+++++ ++ +  +++ +    +  qf++
  MMETSP1061-20121228|37202_1  19 GCLLAALCWSFYIYRMSAWAEFFDETATQFVK 50 
                  56789999999999999998766655555544 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 1.3e-07
    TIGR00950 195 wlallyLgligtllayflynkglkevdasaasilalleplvallLgllilgetlslvqliggalilaavl 264
                  w +l+y +l +  la +   k+  +v+a+   ++  lep+   lLg+l+lge  sl +l gg li  a++
  MMETSP1061-20121228|37202_1  97 WIILFYNALGPCTLADVCQQKAQASVPAAETNVILSLEPVFTTLLGFLVLGEIPSLQELGGGFLITIASI 166
                  8899999999**************************************************9999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (190 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.30
# Mc/sec: 835.93
//
Query:       MMETSP1061-20121228|37215_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|37216_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 685.33
//
Query:       MMETSP1061-20121228|37226_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 341.97
//
Query:       MMETSP1061-20121228|37230_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 390.89
//
Query:       MMETSP1061-20121228|37229_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0022   15.1   0.3     0.0022   15.1   0.2    2.3  2  TIGR00599 rad18: DNA repair protein rad18


Domain annotation for each model (and alignments):
>> TIGR00599  rad18: DNA repair protein rad18
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.3    0.0032        13      46      56 ..      69      79 ..      65      84 .. 0.88
   2 !   15.1   0.2   5.3e-07    0.0022      44      69 ..      97     122 ..      88     127 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0032
    TIGR00599 46 HtFCslCiRrc 56
                  t Cs+CiR++
  MMETSP1061-20121228|37229_1 69 QTSCSICIRDY 79
                 589******98 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 5.3e-07
    TIGR00599  44 CsHtFCslCiRrcLseepkCPlCrae 69 
                  C+H F   Ci ++L+++ +CP+Cr +
  MMETSP1061-20121228|37229_1  97 CNHFFHEDCIIEWLKSQDECPMCRVD 122
                  ************************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 889.19
//
Query:       MMETSP1061-20121228|37245_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 274.98
//
Query:       MMETSP1061-20121228|37248_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 316.77
//
Query:       MMETSP1061-20121228|37243_1  [L=553]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (553 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 2211.82
//
Query:       MMETSP1061-20121228|37259_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1093.62
//
Query:       MMETSP1061-20121228|37255_1  [L=359]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (359 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1692.29
//
Query:       MMETSP1061-20121228|37277_1  [L=201]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.7   0.1      0.032   11.2   0.1    1.1  1  TIGR00330 glpX: fructose-1,6-bisphosphatase, class II


Domain annotation for each model (and alignments):
>> TIGR00330  glpX: fructose-1,6-bisphosphatase, class II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.1   7.7e-06     0.032      15      66 ..      32      84 ..      29      91 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.7e-06
    TIGR00330 15 aaalaaykwlGrGdkneadeaavkamrqvlnev.alkgtvviGeGeideaPml 66
                 a alaa++ +G G  +e      +  r+++ +v + +g++ iGeG+i +a  l
  MMETSP1061-20121228|37277_1 32 AVALAAATSMGLGGNDELLRGISRETREIVAQVlSSEGKLYIGEGNIVDASTL 84
                 579************9998888888888887763689*********9888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (201 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.27
# Mc/sec: 982.59
//
Query:       MMETSP1061-20121228|37284_1  [L=262]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (262 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1440.88
//
Query:       MMETSP1061-20121228|37315_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 2302.48
//
Query:       MMETSP1061-20121228|37333_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|37337_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 490.25
//
Query:       MMETSP1061-20121228|37329_1  [L=993]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (993 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.13s 00:00:00.58 Elapsed: 00:00:00.36
# Mc/sec: 3640.70
//
Query:       MMETSP1061-20121228|37352_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.0   1.5      0.029   11.8   1.1    1.0  1  TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU


Domain annotation for each model (and alignments):
>> TIGR02135  phoU_full: phosphate transport system regulatory protein PhoU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   1.1   7.2e-06     0.029     110     160 ..      32      82 ..      24      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.2e-06
    TIGR02135 110 aksevleelekmgklvlkmlkkaldafankdaelakqvaeldeevdelyrq 160
                  a++ + +el++  +++++ l+k+ ++ +++++ l+ qv+ l+++v++l+++
  MMETSP1061-20121228|37352_1  32 ASQTQVAELQTQNQQLQEWLDKVVKESTKRETLLKVQVRTLEDDVNDLHER 82 
                  44467899***************************************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       395  (0.0962945); expected 82.0 (0.02)
Passed bias filter:                      275  (0.0670405); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|37372_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 435.56
//
Query:       MMETSP1061-20121228|37379_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 521.96
//
Query:       MMETSP1061-20121228|37382_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|37377_1  [L=371]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (371 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 2040.33
//
Query:       MMETSP1061-20121228|37394_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 433.68
//
Query:       MMETSP1061-20121228|37438_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 1633.37
//
Query:       MMETSP1061-20121228|37431_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1964.00
//
Query:       MMETSP1061-20121228|37450_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|37452_1  [L=409]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.9   0.3       0.43    8.2   0.4    2.5  2  TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit


Domain annotation for each model (and alignments):
>> TIGR01939  nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.0     0.016        65      86     122 ..     143     178 ..     134     187 .. 0.86
   2 ?    8.2   0.4    0.0001      0.43     134     157 ..     279     302 ..     263     337 .. 0.74

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.016
    TIGR01939  86 dqvlkafaydiskqlsvfvGliitncivmGraealal 122
                  +qvlk +   i+   s fvG  it+ +v   ++ +a 
  MMETSP1061-20121228|37452_1 143 QQVLKGYSRRINADPS-FVGKSITEVLVAAGTQLMAE 178
                  69*********99977.9*******999887777765 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.0001
    TIGR01939 134 ignGlGygavlvvialirellGsG 157
                  i++GlGyg+v +v+a+  +l+ s 
  MMETSP1061-20121228|37452_1 279 IASGLGYGFVSIVLAIRSKLMPSF 302
                  79*************998888763 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (409 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2249.31
//
Query:       MMETSP1061-20121228|37476_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1136.25
//
Query:       MMETSP1061-20121228|37499_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 477.67
//
Query:       MMETSP1061-20121228|37504_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 502.82
//
Query:       MMETSP1061-20121228|37495_1  [L=464]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (464 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       350  (0.0853242); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.34
# Mc/sec: 1801.26
//
Query:       MMETSP1061-20121228|37502_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2696.35
//
Query:       MMETSP1061-20121228|37517_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 578.24
//
Query:       MMETSP1061-20121228|37530_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 238.84
//
Query:       MMETSP1061-20121228|37536_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 680.79
//
Query:       MMETSP1061-20121228|37552_1  [L=639]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-09   33.8   0.0    2.3e-07   28.2   0.0    2.5  2  TIGR01968 minD_bact: septum site-determining protein MinD
    5.4e-09   33.4   0.4    8.1e-07   26.3   0.0    2.5  3  TIGR01969 minD_arch: cell division ATPase MinD
    3.2e-06   24.3   0.6    2.6e-05   21.3   0.1    2.0  2  TIGR03815 CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
    4.3e-06   24.2   0.1    7.6e-06   23.4   0.0    1.5  1  TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ
    0.00019   18.9   0.0    0.00038   17.9   0.0    1.4  1  TIGR01007 eps_fam: capsular exopolysaccharide family
    0.00052   17.3   0.0      0.001   16.4   0.0    1.4  1  TIGR01281 DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
     0.0015   15.7   0.0     0.0034   14.5   0.0    1.6  1  TIGR02016 BchX: chlorophyllide reductase iron protein subunit X
     0.0027   14.9   0.0     0.0052   14.0   0.0    1.3  1  TIGR03018 pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase
     0.0028   14.7   0.0     0.0052   13.8   0.0    1.4  1  TIGR03029 EpsG: chain length determinant protein tyrosine kinase EpsG
     0.0037   14.0   0.4     0.0084   12.8   0.1    1.6  2  TIGR03453 partition_RepA: plasmid partitioning protein RepA
  ------ inclusion threshold ------
      0.012   12.9   0.2      0.039   11.3   0.0    1.9  2  TIGR00345 arsA: arsenite-activated ATPase ArsA


Domain annotation for each model (and alignments):
>> TIGR01968  minD_bact: septum site-determining protein MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   0.0   6.2e-10   2.3e-07       4      40 ..     238     274 ..     235     284 .. 0.93
   2 ?    2.6   0.0      0.04        15     111     171 ..     354     416 ..     325     422 .. 0.76

  Alignments for each domain:
  == domain 1    score: 28.2 bits;  conditional E-value: 6.2e-10
    TIGR01968   4 ivvtsGkGGvGkttttanlgtalaklgkkvvlvdadi 40 
                  + v s kGGvGk+t++ nl+  la+lg +v l+d+d+
  MMETSP1061-20121228|37552_1 238 LAVYSCKGGVGKSTVAVNLAYELARLGGRVGLLDVDV 274
                  6799********************************8 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.04
    TIGR01968 111 efdyvlidsPaGiekGfknavasad..eaivvttPevsavrdadrviGlleakeieeiklivn 171
                  e d +++d P G      +  ++ +   a+ vttP   a+ da + i ++++ +ie i ++ n
  MMETSP1061-20121228|37552_1 354 ELDVLILDLPPGTGDVQLTVCQEVNlsFAVGVTTPSKLAIADARKGISMFNTMGIETIAMVEN 416
                  47888999999987666555554441168899*******************999999887755 PP

>> TIGR01969  minD_arch: cell division ATPase MinD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.2e-09   8.1e-07       3      53 ..     238     288 ..     236     295 .. 0.87
   2 !    4.6   0.0    0.0089       3.3     108     168 ..     354     416 ..     342     423 .. 0.83
   3 ?   -3.7   0.0       3.1   1.2e+03     203     232 ..     468     499 ..     456     510 .. 0.68

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.2e-09
    TIGR01969   3 itiasGkGGtGkttvtanlgvaLaklGkkvlvlDaDiamanLelilgledk 53 
                  +++ s kGG+Gk tv+ nl+  La+lG +v +lD D+    L l +  +d 
  MMETSP1061-20121228|37552_1 238 LAVYSCKGGVGKSTVAVNLAYELARLGGRVGLLDVDVYGPSLPLQVTTDDD 288
                  6789********************************988777777666665 PP

  == domain 2    score: 4.6 bits;  conditional E-value: 0.0089
    TIGR01969 108 dvdflliDaPaGlerdavtalaaade..lllvvnPeissitDalkvkivaeklgtkilGvvln 168
                  + d+l++D P G +   +t     +   ++ v++P   +i+Da k   + + +g++ + +v n
  MMETSP1061-20121228|37552_1 354 ELDVLILDLPPGTGDVQLTVCQEVNLsfAVGVTTPSKLAIADARKGISMFNTMGIETIAMVEN 416
                  6899********99887777666554115668************************9999877 PP

  == domain 3    score: -3.7 bits;  conditional E-value: 3.1
    TIGR01969 203 aaakgepvvvkkpespaa..kalvelaaelag 232
                  a  +g+p+   +p+ +    +a+ +la+ +  
  MMETSP1061-20121228|37552_1 468 ANEEGVPICLSRPQEAKVelEAFEKLAKIVSR 499
                  56678888888887665422688888887765 PP

>> TIGR03815  CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1     7e-08   2.6e-05     111     163 ..     235     287 ..     229     299 .. 0.89
   2 ?    0.9   0.0      0.11        43     222     267 ..     354     401 ..     331     414 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 7e-08
    TIGR03815 111 gvvvaVvggrGGaGAStlAaalAlaaarsglrtlLvDadPlggGldlllgaed 163
                  ++ +aV + +GG G St+A+ lA + ar g r+ L+D d  g  l l +  +d
  MMETSP1061-20121228|37552_1 235 SHFLAVYSCKGGVGKSTVAVNLAYELARLGGRVGLLDVDVYGPSLPLQVTTDD 287
                  7889*************************************999888777665 PP

  == domain 2    score: 0.9 bits;  conditional E-value: 0.11
    TIGR03815 222 asdlvVvDlpraekpaaeealesadlvlvV..vpadvravaaAervla 267
                    d++++Dlp  ++++  +++++++l ++V  +     a+a A++ ++
  MMETSP1061-20121228|37552_1 354 ELDVLILDLPPGTGDVQLTVCQEVNLSFAVgvTTPSKLAIADARKGIS 401
                  5799***********99*****99986555115555556666666555 PP

>> TIGR03371  cellulose_yhjQ: cellulose synthase operon protein YhjQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0     2e-08   7.6e-06       3      41 ..     237     275 ..     235     398 .. 0.86

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 2e-08
    TIGR03371   3 viaivsvkGGvGkTtltAnLasalklsgeevlaidldpq 41 
                   +a+ s kGGvGk+t++ nLa  l+++g +v ++d+d  
  MMETSP1061-20121228|37552_1 237 FLAVYSCKGGVGKSTVAVNLAYELARLGGRVGLLDVDVY 275
                  689********************************9964 PP

>> TIGR01007  eps_fam: capsular exopolysaccharide family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0     1e-06   0.00038      19      60 ..     237     278 ..     230     296 .. 0.89

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1e-06
    TIGR01007  19 vllitsvkageGkstvsaniavafaqaGyktLliDgDlrksv 60 
                   l++ s k g Gkstv++n+a+ +a+ G ++ l+D D+  + 
  MMETSP1061-20121228|37552_1 237 FLAVYSCKGGVGKSTVAVNLAYELARLGGRVGLLDVDVYGPS 278
                  68999********************************97665 PP

>> TIGR01281  DPOR_bchL: light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.0   2.7e-06     0.001       3      32 ..     238     268 ..     236     278 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 2.7e-06
    TIGR01281   3 lavyG.kGGiGksttssnlsvalakkGkkvl 32 
                  lavy  kGG+Gkst + nl+  la+ G +v 
  MMETSP1061-20121228|37552_1 238 LAVYScKGGVGKSTVAVNLAYELARLGGRVG 268
                  899955*********************9995 PP

>> TIGR02016  BchX: chlorophyllide reductase iron protein subunit X
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   9.2e-06    0.0034       2      37 ..     237     273 ..     236     279 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 9.2e-06
    TIGR02016   2 iiaiyG.kGGiGksftttnlsaklallgkrvlqlGcd 37 
                   +a+y  kGG+Gks +  nl+ +la lg rv +l  d
  MMETSP1061-20121228|37552_1 237 FLAVYScKGGVGKSTVAVNLAYELARLGGRVGLLDVD 273
                  5899955************************998877 PP

>> TIGR03018  pepcterm_TyrKin: exopolysaccharide/PEPCTERM locus tyrosine autokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.4e-05    0.0052      35      81 ..     235     280 ..     229     289 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
    TIGR03018  35 knlimvtsalsgeGksftaiNLAislaleldktvLliDadlrrPsls 81 
                  +  ++v s   g Gks +a+NLA  la  l  +v l+D d+  Psl 
  MMETSP1061-20121228|37552_1 235 SHFLAVYSCKGGVGKSTVAVNLAYELAR-LGGRVGLLDVDVYGPSLP 280
                  5678999*******************97.67789999*******986 PP

>> TIGR03029  EpsG: chain length determinant protein tyrosine kinase EpsG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   1.4e-05    0.0052     104     147 ..     236     279 ..     231     369 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 1.4e-05
    TIGR03029 104 kvlavvsaksGeGcsfiaanlaivfsqlGektllidanlrePeq 147
                  + lav s k G G+s +a nla  +++lG ++ l+d ++  P +
  MMETSP1061-20121228|37552_1 236 HFLAVYSCKGGVGKSTVAVNLAYELARLGGRVGLLDVDVYGPSL 279
                  679*********************************99988865 PP

>> TIGR03453  partition_RepA: plasmid partitioning protein RepA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.1   2.3e-05    0.0084     106     142 ..     237     273 ..     231     279 .. 0.91
   2 ?   -2.8   0.0       1.2   4.5e+02     235     253 ..     355     373 ..     344     417 .. 0.66

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.3e-05
    TIGR03453 106 viavvnfkGGsgktttaahLaqylalrGyrvLavDlD 142
                   +av   kGG gk t a+ La  la  G rv  +D+D
  MMETSP1061-20121228|37552_1 237 FLAVYSCKGGVGKSTVAVNLAYELARLGGRVGLLDVD 273
                  58999**************************999988 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 1.2
    TIGR03453 235 yDvvviDcpPqlgfltlsa 253
                   Dv+++D pP  g + l+ 
  MMETSP1061-20121228|37552_1 355 LDVLILDLPPGTGDVQLTV 373
                  6999*****9998776654 PP

>> TIGR00345  arsA: arsenite-activated ATPase ArsA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0    0.0001     0.039       4      34 ..     243     273 ..     240     275 .. 0.89
   2 ?   -3.4   0.0         3   1.1e+03     206     240 ..     383     417 ..     375     421 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.0001
    TIGR00345   4 GKGGVGKTtisaatairlaesgkkvllvSTD 34 
                   KGGVGK t++  +a +la+ g +v l+  D
  MMETSP1061-20121228|37552_1 243 CKGGVGKSTVAVNLAYELARLGGRVGLLDVD 273
                  6*********************999887655 PP

  == domain 2    score: -3.4 bits;  conditional E-value: 3
    TIGR00345 206 vlVvipeklslkEseRavkeLkkygikvdavivNq 240
                  v V++p kl++ ++++ +   +++gi++ a++ N 
  MMETSP1061-20121228|37552_1 383 VGVTTPSKLAIADARKGISMFNTMGIETIAMVENM 417
                  56899999999999999999999999998888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (639 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       161  (0.0392491); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.31u 0.21s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 2480.62
//
Query:       MMETSP1061-20121228|37572_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.19s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2752.22
//
Query:       MMETSP1061-20121228|37598_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 285.98
//
Query:       MMETSP1061-20121228|37601_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.5   0.0      0.012   12.5   0.0    1.1  1  TIGR03944 dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB


Domain annotation for each model (and alignments):
>> TIGR03944  dehyd_SbnB_fam: 2,3-diaminopropionate biosynthesis protein SbnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.9e-06     0.012     128     155 ..      11      38 ..       4      59 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.9e-06
    TIGR03944 128 kekkakrvgiiGcGlIarevlrfllelg 155
                  k++++ r+g++GcG I+ +v r++++ +
  MMETSP1061-20121228|37601_1  11 KRREPLRIGLLGCGAINSTVARMIVNHQ 38 
                  347899*****************98754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 465.10
//
Query:       MMETSP1061-20121228|37606_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 702.37
//
Query:       MMETSP1061-20121228|37608_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 318.59
//
Query:       MMETSP1061-20121228|37599_1  [L=755]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-207  687.6   0.0   1.6e-205  682.0   0.0    2.0  1  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase
    3.3e-16   56.6   0.1    7.9e-07   25.6   0.0    3.3  3  TIGR00232 tktlase_bact: transketolase
    1.1e-07   28.8   0.9    1.9e-07   28.1   0.6    1.2  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    7.3e-06   22.9   0.1    1.3e-05   22.1   0.1    1.3  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  682.0   0.0  1.6e-208  1.6e-205       3     613 ..      73     732 ..      71     735 .. 0.90

  Alignments for each domain:
  == domain 1    score: 682.0 bits;  conditional E-value: 1.6e-208
    TIGR00204   3 llnkpeelkllsideleklsdelrekllesvsasgGhlasglGvveltvalhkvfdtdkdkliwdvghqayahklltGrreelstlrqkkGlagfpkrseseydvlsaGhsstsisaglGiavaaelkga.dekvvaviGdGaltaGmalealnhaGdlkkdllvilndn.emsise.......nvGa..lskalarllsgslyqslrdelkkilkklPevkekllerveeslkrlvvsgvlfeelGfnyiGPvdGhdlselietlknakklk..gPvllhvktkkGkGyklaekdtigfhgvgkfdlstGalkksksalpsyskifsdtllelakkdekivgitaamreGsgldklskkfPkryfdvaiaeqhavtlaaalaieGlkPvvaiystflqraydqvvhdvaiqklpvllaidraGivGadGethqGlfdisylrsiPnlvlmaPkdenelkqmlvtaleydegpialryPrGnavgv.........eltee......ekleiGksellr................kgedilllgfGtlveealevaeelkek..gieatvvdlrfvkPldeelikalakeieklvtleenvllGGvgsavaevlsdqnvl....vpvkrlgipdefiehgtqeevlaelGldteqlaekila 613
                  ++n p+e+k+l++++l++l++elr  +le vs++gGhl+s+lGv eltvalh+vfd++ d +iwdv+hq+y+hk+ltGrr+ + tlrq  Gl+gf kr+eseyd + aGhsstsisa+ G+++a+++ ++ +++ vaviGdGa+t+Gma+ea+n aG l+ +++v+lndn ++s+ +        v a  ls + ++ll ++ +q +rd +k   k lPe ++++ +r++e  ++lv  g+lfeelGf y+GP+dGhdl++li  l++ ++ +  +Pvllh+kt kG Gy +ae+ + + hgvgkf+l tGa  k+k+  ps++ if++ l++ a +d  +vgitaam+ G+g+d + ++fPkr fdv+iaeqhavt+ a++a+eGlkP+v+iystf+qr+ydqv+hdva+q+lpv + +dr G vG+dG+th G +d +y+ +iPnl +maP+de el++m++t  +++egp+ lryPrG + g          +l +       e ++iGk +++r                +++ +++l+ Gt ++eal +a+e++++  ++++tv d+r++kPld +l+++la++++ l+t+ee+ + GG+g  v+ +ls ++ l       + + +pd + e +tq +  ++ Gl++++++  il+
  MMETSP1061-20121228|37599_1  73 SVNYPHEMKNLDMRQLKQLANELRWEVLEQVSKTGGHLSSSLGVTELTVALHYVFDMPDDDIIWDVAHQCYPHKILTGRRDRFPTLRQLGGLSGFCKRKESEYDSFGAGHSSTSISAAQGMSIAKSILNKrKNNCVAVIGDGAITGGMAYEAMNSAGYLQSRMIVVLNDNgQVSLPTgtpsaggTVPAsqLSTYTSNLLVSKPFQDFRDFAKSFNKLLPEDVQSVNKRIDEYTRGLVSGGTLFEELGFYYVGPIDGHDLDNLIPILEKLRDSPnnKPVLLHIKTVKGYGYPPAESASDRMHGVGKFNLGTGAQFKAKGGEPSFTSIFANALIDAAIEDRSVVGITAAMPGGTGMDIFGRRFPKRTFDVGIAEQHAVTMGAGMACEGLKPFVCIYSTFMQRGYDQVIHDVAVQNLPVRMMLDRGGFVGNDGPTHHGCYDFAYMGCIPNLTIMAPSDEIELRNMVMTCADFNEGPTVLRYPRGVGYGAdklqnlfgyKLEKGeipskgEIIPIGKGRIIRgeggmientsstrgkeRKDRVAILSIGTRLHEALVAAQEVEDEydDLSVTVADARYMKPLDVDLVRQLADDHSVLITIEEGSI-GGFGDHVLHFLSLDGLLddgnLKFRPMVMPDAYFEAATQFQQYEQAGLNSRHIKGTILR 732
                  6899************************************************************************************************************************99765516789***********************************4466643112111123224489999***************************************************************************975227*************************************************************************************************************************************************************************************************************8776511111111133221122246789*******98444444333333332234679****************999875448**********************************986.9**********98885411114577899************************9998875 PP

>> TIGR00232  tktlase_bact: transketolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   1.1e-06    0.0011     116     186 ..     187     248 ..     177     271 .. 0.86
   2 !   11.6   0.0   1.4e-05     0.014     200     259 ..     314     375 ..     296     389 .. 0.86
   3 !   25.6   0.0   7.7e-10   7.9e-07     397     513 ..     436     551 ..     428     559 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.1e-06
    TIGR00232 116 ianavGlalaektlaaefnkesaeivdhytyvlvGDGdlqeGisseaaslaGhlkLgkLivlyDsnkisid 186
                  i+ a G+++a+  l ++ n+           +++GDG +  G+++ea + aG l+   ++vl D+ ++s+ 
  MMETSP1061-20121228|37599_1 187 ISAAQGMSIAKSILNKRKNN---------CVAVIGDGAITGGMAYEAMNSAGYLQSRMIVVLNDNGQVSLP 248
                  77788888888777655444.........5689***********************************986 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1.4e-05
    TIGR00232 200 RfeaygWevlevedgedleeikkaiekakks.kdkPtlikvktiigfgspnk.egteevhga 259
                   fe  g+ ++   dg+dl+++   +ek + s ++kP l+++kt+ g+g p   + +  +hg 
  MMETSP1061-20121228|37599_1 314 LFEELGFYYVGPIDGHDLDNLIPILEKLRDSpNNKPVLLHIKTVKGYGYPPAeSASDRMHGV 375
                  59999***********************987468**************87550556677875 PP

  == domain 3    score: 25.6 bits;  conditional E-value: 7.7e-10
    TIGR00232 397 nyiryGvRefamgaimngialhGglkpygatFlvFvdY.akpaiRlaaLmklkviyvythDsigvGeDGpthqpveqlaslRaipnlsvwRPaDeketaaayklalesqdaptvlils 513
                  + + +G+ e    ++  g+a  G lkp+   + +F++    + i   a+ +l+v +++    + vG+DGpth+     a +  ipnl+++ P+De e    + +  + +++ptvl   
  MMETSP1061-20121228|37599_1 436 RTFDVGIAEQHAVTMGAGMACEG-LKPFVCIYSTFMQRgYDQVIHDVAVQNLPVRMMLDRGGF-VGNDGPTHHGCYDFAYMGCIPNLTIMAPSDEIELRNMVMTCADFNEGPTVLRYP 551
                  66789999999999999**9987.677777777776641356788899*****9999877665.9********************************999999999999999998765 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.1   0.6   1.8e-10   1.9e-07     126     192 ..     185     251 ..     182     262 .. 0.86

  Alignments for each domain:
  == domain 1    score: 28.1 bits;  conditional E-value: 1.8e-10
    TIGR03181 126 tqvlhAaGvAlalklkge.kevavayiGdGgtsegdfyealnfAavfkapvvfvvqNNqwAISvprsk 192
                  t+++ A G+ +a  + ++ k+  va+iGdG+   g  yea+n A+  +  +++v++ N+  +S p+ +
  MMETSP1061-20121228|37599_1 185 TSISAAQGMSIAKSILNKrKNNCVAVIGDGAITGGMAYEAMNSAGYLQSRMIVVLNDNG-QVSLPTGT 251
                  678999******9976653899********************************99997.46766655 PP

>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.1   0.1   1.3e-08   1.3e-05     109     171 ..     180     243 ..     162     254 .. 0.85

  Alignments for each domain:
  == domain 1    score: 22.1 bits;  conditional E-value: 1.3e-08
    TIGR03182 109 hgivgaqvplatGlafaekyk.kedevtlaffGdgavnqGqvyEslnlaalwklPvifviennk 171
                   g  +  ++ a G++ a+    k+++ ++a++Gdga+  G  yE++n a   +  +i v+++n 
  MMETSP1061-20121228|37599_1 180 AGHSSTSISAAQGMSIAKSILnKRKNNCVAVIGDGAITGGMAYEAMNSAGYLQSRMIVVLNDNG 243
                  4555778999*******9876156899**********************999999999998884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (755 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.40
# Mc/sec: 2491.29
//
Query:       MMETSP1061-20121228|37641_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   11.4   1.6      0.056   11.1   1.1    1.1  1  TIGR01025 rpsS_arch: ribosomal protein S19


Domain annotation for each model (and alignments):
>> TIGR01025  rpsS_arch: ribosomal protein S19
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.1   1.4e-05     0.056      29      62 ..      18      51 ..      14      59 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.4e-05
    TIGR01025 29 arqrrklkrGltrkqkkllkklrkakkeatkgkk 62
                  r++++++r l++  ++++ +l ka kea+k k+
  MMETSP1061-20121228|37641_1 18 ERKKKRISRKLKPIGNNVVSRLAKAAKEAAKKKD 51
                 5999************************966442 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       268  (0.065334); expected 82.0 (0.02)
Passed bias filter:                      202  (0.0492443); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1061-20121228|37636_1  [L=308]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.8e-05   19.8   0.1    9.8e-05   19.8   0.1    1.9  2  TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family
  ------ inclusion threshold ------
       0.03   10.6  10.3      0.039   10.3   7.1    1.1  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
       0.16    9.8   6.5       0.24    9.3   4.5    1.2  1  TIGR02205 septum_zipA: cell division protein ZipA
       0.31    6.8   4.6       0.39    6.5   3.2    1.1  1  TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming)


Domain annotation for each model (and alignments):
>> TIGR00573  dnaq: exonuclease, DNA polymerase III, epsilon subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   1.8      0.75   7.7e+02     186     206 ..      89     108 ..      78     123 .. 0.45
   2 !   19.8   0.1   9.6e-08   9.8e-05      48     185 ..     162     298 ..     119     308 .] 0.82

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.75
    TIGR00573 186 qqekvehakksivkkdsllkl 206
                  q+++ ++ +k+++k+ + ++ 
  MMETSP1061-20121228|37636_1  89 QKQRRKNNQKKTKKQ-QQKQK 108
                  222222222222222.22222 PP

  == domain 2    score: 19.8 bits;  conditional E-value: 9.6e-08
    TIGR00573  48 kpdrkikpdaikihgitddmLkdkp.dfkevaedfadyikgkvLvihnasfDvgFlnaefkkl.lkkekkkndvidvldllqvvrkefpgkrntldalakryeienskRalhgaladAfilaelylvmtekqlkla..eneg 185
                    d+ +      + git+   +d+  ++ e  e++   i +k+Lv+h+ + D+  l      + +++  k ++++++    +++ + ++ k++ l+ l  +++ +     +h a  dA   ++ly++   k +k++  + ++
  MMETSP1061-20121228|37636_1 162 RQDQEVTDYRTFVSGITPLDVEDATlTLEECREEVQSMIADKILVGHALKNDLRALGLTHPWMaTRDTAKYEPFMQTRFEDNILWP-RKLKELALEKLERKIQRDGE---AHSAYEDAAAAMDLYRLVRRKWEKVMdyK-IK 298
                  55666666666688999988888864789999************************999987769999999****99877777666.799********999999888...*****************999999988532.22 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   7.1   3.8e-05     0.039      50     194 ..      35     187 ..      28     212 .. 0.48

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 3.8e-05
    TIGR01642  50 sRdRdrrrydsrsissleeds...............rrrSRdrirrrsrsssseskerrrsrkrsssnekkkddkkrslwdvkppkyeavtavqakasqvan...svpgiaqkssltstekllaegskitdlpvlaveqqatrkaRrlyvgniPpeakeeavv 194
                  +R R+rrr++ rs+ sl  +                +  S d               r++++k+ ++n++kk +k++++ + k +++e   + q +   +      v  + ++ss+   + +  +g+++ d  v    q+ +    r +v++i p  +e+a  
  MMETSP1061-20121228|37636_1  35 KRRRRRRRRRPRSKMSLSSSDsqsscgacddstcatVSLSSDDSSTATP-------PRQQQQKQRRKNNQKKTKKQQQKQKNKNAEHEVSLEEQSRYLAMDCemvGVGMTGKRSSVARVTLVDWDGRIVYDEFVR---QDQEVTDYRTFVSGITPLDVEDATL 187
                  3333333333333333222221222333222222222233333223333.......3444444444455555555555555555555544444333222222000344455777777744444677777776665...6666667777888887777777665 PP

>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.5   0.00023      0.24      24     102 ..      32     112 ..      20     140 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00023
    TIGR02205  24 ksrkeksklfdkkklkraklksdddsseelvedde.veevrverveheipqpseqke.psiseavdkerkksvedeeasvp 102
                  +++k +++  + +++++++l s d +s+  + dd     v     + ++++p  q++  +  +   k+ kk++++++ +  
  MMETSP1061-20121228|37636_1  32 TEQKRRRRRRRRRPRSKMSLSSSDSQSSCGACDDStCATVSLSSDDSSTATPPRQQQqKQRRKNNQKKTKKQQQKQKNKNA 112
                  4555566667889********999999998888887888888888776666554444044444444333333333332222 PP

>> TIGR03030  CelA: cellulose synthase catalytic subunit (UDP-forming)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   3.2   0.00038      0.39     561     656 ..      29     121 ..      20     145 .. 0.57

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.00038
    TIGR03030 561 avaaEkrqkrsspRievklpvevaledgeelleakvedlsvgGlavkleakkaeeakeeeeekvklkkkrdgeeavkparvreakereiglefeae 656
                  ++ +E++ +r+ +R + + ++++   d++ +  ++ +d +   + ++  +++  +a+  ++++ k + k++++++ k+++++++k++e ++++e++
  MMETSP1061-20121228|37636_1  29 EIETEQKRRRRRRRRRPRSKMSLSSSDSQ-SSCGACDDSTCATVSLSSDDSS--TATPPRQQQQKQRRKNNQKKTKKQQQKQKNKNAEHEVSLEEQ 121
                  44555555556666666666666666655.6667777877777766554444..444444444444445555555555555555555555544443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (308 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       499  (0.121648); expected 82.0 (0.02)
Passed bias filter:                      188  (0.0458313); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.17s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 1311.38
//
Query:       MMETSP1061-20121228|37651_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|37662_1  [L=704]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (704 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.27
# Mc/sec: 3441.49
//
Query:       MMETSP1061-20121228|37670_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 541.85
//
Query:       MMETSP1061-20121228|37673_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-10   39.1   0.2    1.5e-10   39.1   0.2    1.1  1  TIGR01385 TFSII: transcription elongation factor S-II
    1.9e-10   39.2   0.4    1.9e-10   39.2   0.3    1.1  1  TIGR01384 TFS_arch: transcription factor S
     0.0098   13.8   1.2       0.35    8.9   0.0    2.2  2  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
  ------ inclusion threshold ------
      0.026   12.1   3.2       0.16    9.5   0.1    2.6  3  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain


Domain annotation for each model (and alignments):
>> TIGR01385  TFSII: transcription elongation factor S-II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1   0.2   1.5e-13   1.5e-10     259     297 ..      30      68 ..      11      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 1.5e-13
    TIGR01385 259 lFkCGkCkkkkvtYyqlqtRSaDEPmttfvtCveCgNrW 297
                  +  C  C++ +  + q+q RSaDEPm  f  Cv+C+ +W
  MMETSP1061-20121228|37673_1  30 MAACPACNHNEAYFMQIQIRSADEPMSVFYKCVKCNQQW 68 
                  55799********************************** PP

>> TIGR01384  TFS_arch: transcription factor S
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.3   1.9e-13   1.9e-10      57      99 ..      25      70 ..       3      71 .] 0.79

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 1.9e-13
    TIGR01384 57 tlp.tkiecpkcknkeyywlk.qtrr.depetrfykckkcgkvwre 99
                  ++ t   cp c+++e y+++ q r+ dep + fykc kc+++w e
  MMETSP1061-20121228|37673_1 25 NVDrTMAACPACNHNEAYFMQiQIRSaDEPMSVFYKCVKCNQQWNE 70
                 45535667*****999776654888559****************87 PP

>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0   0.00034      0.35      24      36 ..      28      40 ..      21      50 .. 0.82
   2 ?    4.0   0.3     0.011        12       6      15 ..      59      68 ..      58      71 .] 0.85

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.00034
    TIGR02605 24 dplasCPeCgsee 36
                    a+CP+C+++e
  MMETSP1061-20121228|37673_1 28 RTMAACPACNHNE 40
                 56789*****976 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.011
    TIGR02605  6 YrCtaCghef 15
                 Y+C +C+++ 
  MMETSP1061-20121228|37673_1 59 YKCVKCNQQW 68
                 9*****9975 PP

>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0      0.79   8.1e+02      14      22 ..      12      20 ..      11      22 .. 0.78
   2 ?    3.0   0.1     0.017        18       5      32 ..      33      37 ..      29      44 .. 0.74
   3 ?    9.5   0.1   0.00016      0.16      27      36 ..      60      69 ..      47      71 .] 0.91

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.79
    TIGR02098 14 Vddsqlgin 22
                 V+d+ lg++
  MMETSP1061-20121228|37673_1 12 VVDDILGGA 20
                 899999987 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.017
    TIGR02098  5 CPnCktsyrVddsqlginggkVRCgkCg 32
                 CP+C                       +
  MMETSP1061-20121228|37673_1 33 CPAC-----------------------N 37
                 6666.......................4 PP

  == domain 3    score: 9.5 bits;  conditional E-value: 0.00016
    TIGR02098 27 RCgkCghvwt 36
                 +C kC++ w+
  MMETSP1061-20121228|37673_1 60 KCVKCNQQWN 69
                 9********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 446.25
//
Query:       MMETSP1061-20121228|37686_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1230.14
//
Query:       MMETSP1061-20121228|37696_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|37699_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 501.56
//
Query:       MMETSP1061-20121228|37702_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 615.95
//
Query:       MMETSP1061-20121228|37720_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       209  (0.0509508); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 599.95
//
Query:       MMETSP1061-20121228|37721_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.32
# Mc/sec: 1559.12
//
Query:       MMETSP1061-20121228|37734_1  [L=140]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.4    5.8   5.9        1.6    5.7   0.1    2.3  2  TIGR03818 MotA1: flagellar motor stator protein MotA


Domain annotation for each model (and alignments):
>> TIGR03818  MotA1: flagellar motor stator protein MotA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   0.1   0.00038       1.6     157     186 ..      27      56 ..      22      61 .. 0.88
   2 ?    2.9   0.5    0.0027        11     165     184 ..      63      84 ..      57     100 .. 0.78

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.00038
    TIGR03818 157 ealkpaealqkvadalPglGivaAvlGvvi 186
                  e  + a+al+k +d++  +Gi+ Av  +v+
  MMETSP1061-20121228|37734_1  27 EDDAIADALEKNGDSVDVVGILGAVASIVV 56 
                  5667899******************99986 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0027
    TIGR03818 165 lqkvadalPg..lGivaAvlGv 184
                  l++++ +lP+  +Giv A+ G+
  MMETSP1061-20121228|37734_1  63 LKTTGCGLPAgpFGIVGAIEGI 84 
                  788889999888******9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (140 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 710.71
//
Query:       MMETSP1061-20121228|37744_1  [L=767]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   20.0   0.8     0.0002   19.1   0.6    1.4  1  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.6     5e-08    0.0002     153     284 ..     311     447 ..     292     449 .. 0.80

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 5e-08
    TIGR03296 153 klvgdytiqpedagvgVlaHElGHdlglPDlYdtsydgggetpvGdWslMssGswagkgstppdmkawlke.klgWlneqsvatkrgk...........ttl...akagavkvlklavtknanealllenrtkkgvdaalpaeGlli 284
                  +++  ++ ++ +  + + +HE+GH++glP+  +    g ++++  + ++M+  s+  k + p + +  +k  +l W  +++v+ + ++           +     +++++++v+++++  ++++ l++ + ++kg+ +++ + G ++
  MMETSP1061-20121228|37744_1 311 SWLSVFNDDWCQQ-LSTQVHEIGHNMGLPHSGK----G-DSSYADKSGMMGF-SYKEK-DSPRQCFNPSKSyQLAWYGNSVVDWNPSSsgtwvgpvvgvV-DydeNSSDQTTVIRIPR-PRHGSDLYIGYNRAKGMNSEVRENGDKV 447
                  5666666666665.78899**********8655....2.334889999***9.88855.8999999999962667********99999999998876543.15778888899999977.8999**************9998888665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (767 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.32
# Mc/sec: 3163.61
//
Query:       MMETSP1061-20121228|37772_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 2297.81
//
Query:       MMETSP1061-20121228|37774_1  [L=770]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (770 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       452  (0.11019); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:00.53
# Mc/sec: 1917.58
//
Query:       MMETSP1061-20121228|37776_1  [L=520]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (520 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.16s 00:00:00.42 Elapsed: 00:00:00.35
# Mc/sec: 1960.98
//
Query:       MMETSP1061-20121228|37778_1  [L=592]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (592 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.31
# Mc/sec: 2520.57
//
Query:       MMETSP1061-20121228|37780_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   11.0   9.1      0.093    9.6   1.2    2.3  2  TIGR03805 beta_helix_1: parallel beta-helix repeat-containing protein


Domain annotation for each model (and alignments):
>> TIGR03805  beta_helix_1: parallel beta-helix repeat-containing protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.4   0.7   0.00043       1.8     107     139 ..     470     502 ..     463     512 .. 0.87
   2 ?    9.6   1.2   2.3e-05     0.093     130     198 ..     530     599 ..     522     604 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00043
    TIGR03805 107 ayGiypvestnvlvedsevrgaadaGiyvGqse 139
                  + Gi  ++  +v + +s+++  a +G+y+G s 
  MMETSP1061-20121228|37780_1 470 GRGIVNIDGGHVKIYNSYIHDCAATGVYIGGSG 502
                  56999999**********************885 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 2.3e-05
    TIGR03805 130 daGiyvGqsenivvrnnvakeNvaGieiENsknadvknNvaenNtgGilvfdlPdlpv.kkgssvrvfeN 198
                   +Giyv q + ++   n++ + ++Gi +    na ++  +      G l  +lP+  + ++g+sv   +N
  MMETSP1061-20121228|37780_1 530 HSGIYVEQGQATITDCNISGNTLTGISVVSPDNALINLRESDLVSNGTLQLELPGVGTvSHGNSVSANNN 599
                  68*********************************99999999999********9865156777766666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.12s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 2319.24
//
Query:       MMETSP1061-20121228|37779_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 2041.95
//
Query:       MMETSP1061-20121228|37777_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       192  (0.0468064); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.17s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 1877.18
//
Query:       MMETSP1061-20121228|37781_1  [L=1506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   22.0   0.0    1.2e-05   22.0   0.0    1.8  2  TIGR00475 selB: selenocysteine-specific translation elongation factor
    0.00062   17.0   0.0     0.0014   15.9   0.0    1.5  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    0.00076   16.8   1.1     0.0017   15.7   0.0    1.9  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
  ------ inclusion threshold ------
      0.017   12.4   0.0      0.033   11.4   0.0    1.4  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
      0.019   11.2   0.0      0.019   11.2   0.0    5.3  5  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
      0.033   11.5   0.0      0.059   10.6   0.0    1.3  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
      0.065    9.6   0.6       0.51    6.6   0.0    2.0  2  TIGR00955 3a01204: pigment precursor permease
       0.88    5.8   4.9        2.3    4.4   0.0    2.1  2  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
        1.8    4.9   4.2        0.2    8.0   0.0    1.4  2  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit


Domain annotation for each model (and alignments):
>> TIGR00475  selB: selenocysteine-specific translation elongation factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   2.7e-08   1.2e-05      47     146 ..     126     223 ..      95     245 .. 0.81
   2 ?   -4.9   2.4       3.8   1.7e+03     335     432 ..    1139    1174 ..    1098    1210 .. 0.46

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 2.7e-08
    TIGR00475  47 ledkvlgliDvPGHekflknalagvggidaalLvvdadeGvkaqtkEHLavlkllgikelivvltKaDrvdeee.vkevEeelkeileeeeflknakivkv 146
                   ++k+++l++ P  +   + +l    ++d +lL vda+ G    t E L +l+  g+++++ v t +D+ + ++ ++++ ++lk+    e++   ak++  
  MMETSP1061-20121228|37781_1 126 SKHKRITLLECPSDDT--SAMLDCAKIADLVLLCVDAKFGFEMETFEFLNILQTHGFPKVMGVFTHLDQFQTAKnLRKTKKLLKHRFWTEIYD-GAKMFYF 223
                  5568999999998774..99*************************************************998852455555555544444443.5565555 PP

  == domain 2    score: -4.9 bits;  conditional E-value: 3.8
    TIGR00475  335 vlel..pkrvkrkaflaelikaeseaqeiallkergavdlklefakqltgvslkklllkpeairirgvllvkdfveekkkkilkaldteqh.delgvdker 432 
                   v     +kr  + + +++++k+e++                                                                 +  + +v+++r
  MMETSP1061-20121228|37781_1 1139 VKARkeKKRESKVEKIKKNAKKEEA-----------------------------------------------------------------KaAARKVNRKR 1174
                   2111112222222333333333222.................................................................22222333332 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     3e-06    0.0014      29      65 ..      87     123 ..      77     132 .. 0.89

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 3e-06
    TIGR00972  29 vtaliGpsGcGkstllrslnrlndlveevrieGkvll 65 
                  +++++Gp G Gkstl+rsl +l    + + ++G +++
  MMETSP1061-20121228|37781_1  87 LVVVMGPKGVGKSTLIRSLVKLYTNHNLTSVTGPITV 123
                  6789*********************999999999875 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   3.7e-06    0.0017      26      57 ..      83     114 ..      67     135 .. 0.76
   2 ?   -1.7   0.4      0.76   3.5e+02      33      75 ..    1116    1160 ..    1112    1172 .. 0.62

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 3.7e-06
    TIGR02315  26 kkGelvaviGlsGaGkstllrsinrlveissg 57 
                  ++  lv+v+G+ G Gkstl+rs+ +l ++++ 
  MMETSP1061-20121228|37781_1  83 SPPALVVVMGPKGVGKSTLIRSLVKLYTNHNL 114
                  56679*********************986543 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.76
    TIGR02315   33 viGlsGaGkstllrsinrlve.issgsi.llegkevtklkkkelr 75  
                   v+ +s   k t+l+++n + + + +++  + ++++v+k+kk++++
  MMETSP1061-20121228|37781_1 1116 VMEKSEKKKFTFLQAVNTIRNeKVKARKeKKRESKVEKIKKNAKK 1160
                   6677888899*******9987333444303344556666544433 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   7.3e-05     0.033      28      57 ..      86     120 ..      72     133 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 7.3e-05
    TIGR03864  28 efvaLLGpnGaGkstLfslltrLyeak.....ege 57 
                  ++v+++Gp G GkstL+  l +Ly+++     +g 
  MMETSP1061-20121228|37781_1  86 ALVVVMGPKGVGKSTLIRSLVKLYTNHnltsvTGP 120
                  57899*******************98744444444 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.4   2.4       1.1     5e+02     352     400 ..      12      59 ..       2      77 .. 0.45
   2 ?   11.2   0.0   4.1e-05     0.019      28      52 ..      88     112 ..      86     160 .. 0.89
   3 ?   -6.1  10.8       7.4   3.4e+03     306     402 ..     463     537 ..     407     574 .. 0.48
   4 ?    0.6   4.6     0.069        32     321     425 ..     702     806 ..     685     816 .. 0.47
   5 ?   -1.7   5.9      0.34   1.5e+02     352     429 ..    1121    1200 ..    1073    1208 .. 0.51

  Alignments for each domain:
  == domain 1    score: -3.4 bits;  conditional E-value: 1.1
    TIGR02442 352 kkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavs 400
                  +kq++e  g+++ k++d+++++  ++e  +++ +++ ++i+r++ + + 
  MMETSP1061-20121228|37781_1  12 HKQKKEGRGAKERKKDDKAKKEGTRKE-RHNHRAFSVANIVRTQRTIQR 59 
                  112222233333333333333333332.344555555555555544443 PP

  == domain 2    score: 11.2 bits;  conditional E-value: 4.1e-05
    TIGR02442  28 vlirGekGtaKstaaRaLaallpdi 52 
                  v+++G kG++Kst++R+L +l  + 
  MMETSP1061-20121228|37781_1  88 VVVMGPKGVGKSTLIRSLVKLYTNH 112
                  89*****************998765 PP

  == domain 3    score: -6.1 bits;  conditional E-value: 7.4
    TIGR02442 306 lkhRrrrkpfeee.qekeekkleekkeeakpdeekedeseekekeeskkqe.eeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavska 402
                  l+ R+r ++     q + e+  ++ + e ++d++  d+s+++  ++s++++ ++++++d+e+++d++ e++ ++                        +
  MMETSP1061-20121228|37781_1 463 LPYRVRGEAASGGnQVDGESGSDDGSDESDSDSDDDDDSDNSYGSDSEEEKdSDDNDSDEEDDDDSEGETKTSQ------------------------K 537
                  44444422222221222222222222222222222222212222111111112222222222222222222222........................1 PP

  == domain 4    score: 0.6 bits;  conditional E-value: 0.069
    TIGR02442 321 keekkleekkeeakpdeekedeseekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavska.rargasGrrsktrs..dkrgryvka 425
                  +ee++ ++ +e+ +p+e  +d + ++ + e  k+ +++ g dd+ ++++k++  +e ++ +e + e  +   r k+ +++++ ++ g+ G+rs+ r    ++g y++ 
  MMETSP1061-20121228|37781_1 702 EEEEDDDSDDESGNPTEGMTDAEVRAYHAE--KKAKQKKGFDDDYDDEKKSKGMGEMKD-DEAENEYLEALKRQKEEKMKRNhEEFGKDGERSRLRHegFRQGIYCRI 806
                  233333444444444444444442222222..222223333444444444444444432.222222222222233333332214788899999988743466666665 PP

  == domain 5    score: -1.7 bits;  conditional E-value: 0.34
    TIGR02442  352 kkqe....eeepgkddekeedekeeaeeeaesaeevalepagkifrvkllavskarargasGrrsktrsdkrgryvkaernr 429 
                   +k++    +  +  ++ek +  ke++ e++   e+ + +++ + ++  + +v+++r+ +a G+r k++ +kr ++ + ++++
  MMETSP1061-20121228|37781_1 1121 EKKKftflQAVNTIRNEKVKARKEKKRESK--VEKIKKNAKKEEAKAAARKVNRKRQYRAEGKREKMQDAKRAKMRRLSNPS 1200
                   111122332233333333333333333222..23444444444444444445555688999999999999998888877765 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00013     0.059      27      52 ..      86     111 ..      76     131 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00013
    TIGR03410  27 evvavlGrngvGkttllkalvgllkv 52 
                   +v+v+G  gvGk+tl+++lv l+++
  MMETSP1061-20121228|37781_1  86 ALVVVMGPKGVGKSTLIRSLVKLYTN 111
                  5789****************988765 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   0.0    0.0011      0.51      52      76 ..      86     110 ..      55     128 .. 0.86
   2 ?    0.0   0.6      0.11        51     280     335 ..    1141    1196 ..    1134    1237 .. 0.66

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0011
    TIGR00955  52 ellAvlGsSGaGKtTLlnalafrse 76 
                   l+ v+G+ G GK+TL+  l +  +
  MMETSP1061-20121228|37781_1  86 ALVVVMGPKGVGKSTLIRSLVKLYT 110
                  6999*************99876543 PP

  == domain 2    score: 0.0 bits;  conditional E-value: 0.11
    TIGR00955  280 avepgseeesretiekicdaeaksklsreveentnlasgkekklvkdseneekiky 335 
                   a +++++e+++e+i+k  ++e+++ ++r+v+++++  ++ +++ ++d++ ++  + 
  MMETSP1061-20121228|37781_1 1141 ARKEKKRESKVEKIKKNAKKEEAKAAARKVNRKRQYRAEGKREKMQDAKRAKMRRL 1196
                   5566777778899***************9999999776666666666666665553 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.4   0.0     0.005       2.3     345     368 ..      86     109 ..      76     115 .. 0.86
   2 ?   -0.1   2.7      0.12        55     158     237 ..    1126    1206 ..    1123    1211 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.005
    TIGR01842 345 ealaiiGpsgsGkssLarllvGvw 368
                  + ++++Gp g Gks+L r lv  +
  MMETSP1061-20121228|37781_1  86 ALVVVMGPKGVGKSTLIRSLVKLY 109
                  56899**************99765 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.12
    TIGR01842  158 allneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasd.ragalsalskvlRiv 237 
                   ++l+++ t ++ k   +++ k+++++++ ++na+  ea +  ++++++ + + + + ++ + a+  +   ls+ s+vlR+v
  MMETSP1061-20121228|37781_1 1126 TFLQAVNTIRNEKVKARKEKKRESKVEKIKKNAKKEEAKAAARKVNRKRQYRAEGKREKMQDAKRaKMRRLSNPSRVLRLV 1206
                   566666777777777778889999*********************9999999888888777776515568********987 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   0.00045       0.2     353     391 ..      77     115 ..      12     136 .. 0.68
   2 ?   -5.8   1.5       7.1   3.2e+03     182     224 ..    1152    1194 ..    1138    1198 .. 0.65

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00045
    TIGR02868 353 gvsldlepGervavvGasGaGKstLlallaglldplkGe 391
                   ++ + +p + v v+G+ G+GKstL+  l++l   ++ +
  MMETSP1061-20121228|37781_1  77 SIDPNESPPALVVVMGPKGVGKSTLIRSLVKLYTNHNLT 115
                  5666666777899*****************998866544 PP

  == domain 2    score: -5.8 bits;  conditional E-value: 7.1
    TIGR02868  182 eqalarlrselaaqlldllegaaelvvaGaleavlaqveeaer 224 
                   e+ ++++++e a+++++ ++ + ++++ G+ e+++++ +++ r
  MMETSP1061-20121228|37781_1 1152 EKIKKNAKKEEAKAAARKVNRKRQYRAEGKREKMQDAKRAKMR 1194
                   4555666666677777777777778888877777776666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       429  (0.104583); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        55  (0.0134081); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 1.16u 0.18s 00:00:01.34 Elapsed: 00:00:00.72
# Mc/sec: 2760.77
//
Query:       MMETSP1061-20121228|37782_1  [L=412]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (412 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       184  (0.0448562); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.23
# Mc/sec: 2364.33
//
Query:       MMETSP1061-20121228|37785_1  [L=814]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (814 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.11s 00:00:00.48 Elapsed: 00:00:00.39
# Mc/sec: 2754.85
//
Query:       MMETSP1061-20121228|37783_1  [L=966]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-08   31.1   0.0    4.1e-08   29.4   0.0    1.7  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    0.00017   18.9   0.0     0.0003   18.1   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0     2e-11   4.1e-08      49     134 ..     620     717 ..     578     732 .. 0.69
   2 ?   -1.5   0.0      0.04        82     143     160 ..     813     830 ..     802     833 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.4 bits;  conditional E-value: 2e-11
    TIGR03903  49 aedgllFavFeyveGrtlrevL...aadGaLpaae...tgrLmlqvL....DalaaahdaGvvhRDLkPqnimvsaadve.shakvLDFGiga.Llpg 134
                       +F v e+v+G  l +++   a +G+ + ++     ++m         ++   h  G+ hRDLkP+n++v ++++  +  k+ DFG++a  +pg
  MMETSP1061-20121228|37783_1 620 DSKSTMFLVLELVKGGELFDLIsssAGKGTRSVQDieqSEQMMRTFFyelaSGINYCHLSGIAHRDLKPENLLVHNTGDGsRILKIADFGLSAaFGPG 717
                  455679999999999999988832234566554431114456655441111556679*****************9987761568*******9625565 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.04
    TIGR03903 143 ltrttevlGsPaYaaPeq 160
                  l r + v+GsP+Y aPe 
  MMETSP1061-20121228|37783_1 813 LRRMSSVVGSPHYVAPEI 830
                  667889**********95 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.0   1.5e-07    0.0003      93     137 ..     656     712 ..     586     744 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 1.5e-07
    TIGR03724  93 l.......ellkevGelvgklHkagivhgDlttsNiivk.....ddklyliDfGLgk 137
                  +        +++e++  ++ +H  gi+h Dl ++N++v+     ++ l + DfGL+ 
  MMETSP1061-20121228|37783_1 656 EqseqmmrTFFYELASGINYCHLSGIAHRDLKPENLLVHntgdgSRILKIADFGLSA 712
                  033334668999**************************7565533445678***986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (966 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.35
# Mc/sec: 3642.90
//
Query:       MMETSP1061-20121228|37786_1  [L=1438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.15s 00:00:00.72 Elapsed: 00:00:00.47
# Mc/sec: 4038.30
//
Query:       MMETSP1061-20121228|37784_1  [L=599]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-07   27.2  15.3       0.52    8.5   0.0    9.4  9  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.7   0.2    0.0042        17      16      34 ..     219     238 ..     201     239 .. 0.78
   2 !    3.1   0.0    0.0062        26      12      27 ..     254     269 ..     240     272 .. 0.87
   3 ?    0.4   0.0     0.047   1.9e+02       2      13 ..     286     297 ..     285     298 .. 0.87
   4 ?   -0.0   0.0     0.062   2.6e+02       2      12 ..     345     355 ..     344     356 .. 0.88
   5 ?   -3.1   0.0       0.6   2.5e+03      16      34 ..     369     387 ..     366     387 .. 0.75
   6 !    5.9   0.0   0.00083       3.4      16      35 .]     407     426 ..     389     426 .. 0.83
   7 !    8.5   0.0   0.00013      0.52       2      28 ..     428     454 ..     427     458 .. 0.92
   8 !    4.1   0.1    0.0031        13       2      12 ..     473     483 ..     472     485 .. 0.91
   9 ?    1.0   0.0      0.03   1.2e+02       2      10 ..     517     525 ..     516     526 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0042
    TIGR00756  16 veeAlelfdeMker.givPd 34 
                  +e A++l+++M+++  i+P+
  MMETSP1061-20121228|37784_1 219 PEAAERLLKRMMDDeTIEPN 238
                  5899****999887456666 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.0062
    TIGR00756  12 kagrveeAlelfdeMk 27 
                  ka+++++A ++++ M+
  MMETSP1061-20121228|37784_1 254 KANSLDKATQIYRHME 269
                  78999*********97 PP

  == domain 3    score: 0.4 bits;  conditional E-value: 0.047
    TIGR00756   2 tyntlisglcka 13 
                  t n++++++++ 
  MMETSP1061-20121228|37784_1 286 TVNAVLHAYARK 297
                  88*******995 PP

  == domain 4    score: -0.0 bits;  conditional E-value: 0.062
    TIGR00756   2 tyntlisglck 12 
                  ty+++++ +++
  MMETSP1061-20121228|37784_1 345 TYTSVMDVHSR 355
                  9******9987 PP

  == domain 5    score: -3.1 bits;  conditional E-value: 0.6
    TIGR00756  16 veeAlelfdeMkergivPd 34 
                  +ee+++l+++   + ++P+
  MMETSP1061-20121228|37784_1 369 LEEVKKLYEKTGNQRHKPN 387
                  5899999998766666665 PP

  == domain 6    score: 5.9 bits;  conditional E-value: 0.00083
    TIGR00756  16 veeAlelfdeMkergivPda 35 
                  ++ ++ +++eM+++g +P++
  MMETSP1061-20121228|37784_1 407 PRQVEAIMNEMRKAGERPNT 426
                  5678999***********95 PP

  == domain 7    score: 8.5 bits;  conditional E-value: 0.00013
    TIGR00756   2 tyntlisglckagrveeAlelfdeMke 28 
                  ty++ + + ++++++ +A++++++++ 
  MMETSP1061-20121228|37784_1 428 TYTSAVQCWARSRDPYKAKRVLKLLMT 454
                  9*********************99886 PP

  == domain 8    score: 4.1 bits;  conditional E-value: 0.0031
    TIGR00756   2 tyntlisglck 12 
                  tynt i+++++
  MMETSP1061-20121228|37784_1 473 TYNTAIDACAR 483
                  9********98 PP

  == domain 9    score: 1.0 bits;  conditional E-value: 0.03
    TIGR00756   2 tyntlisgl 10 
                  ty+tli++l
  MMETSP1061-20121228|37784_1 517 TYSTLIRAL 525
                  9******97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (599 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       180  (0.043881); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2823.62
//
Query:       MMETSP1061-20121228|37787_1  [L=1515]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-59  198.0   7.4    5.2e-58  194.8   4.7    2.1  2  TIGR01059 gyrB: DNA gyrase, B subunit
    1.5e-52  176.7  12.8    5.1e-52  174.9   8.8    1.9  1  TIGR01058 parE_Gpos: DNA topoisomerase IV, B subunit
    1.4e-44  150.4  11.5    6.5e-43  144.9   7.9    2.6  1  TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit
    4.5e-26   88.8   0.3    5.4e-25   85.3   0.0    2.2  2  TIGR01063 gyrA: DNA gyrase, A subunit
    3.1e-19   66.3   0.3    7.3e-19   65.1   0.0    1.7  2  TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit
    1.4e-17   61.2   1.5    1.8e-17   60.9   0.0    1.9  2  TIGR01061 parC_Gpos: DNA topoisomerase IV, A subunit


Domain annotation for each model (and alignments):
>> TIGR01059  gyrB: DNA gyrase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.024        16      11      47 ..     121     157 ..     114     162 .. 0.89
   2 !  194.8   4.7   7.5e-61   5.2e-58      29     584 ..     162     711 ..     157     738 .. 0.79

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.024
    TIGR01059  11 GleavrkrPgmyiGstgekGlhhlvyevvdnaideal 47 
                   le++  rP  yiGs +++    ++y+ v  ai e  
  MMETSP1061-20121228|37787_1 121 QLEHILLRPDTYIGSDKPTEDRAFIYDAVQGAIVEKT 157
                  589999**************************98865 PP

  == domain 2    score: 194.8 bits;  conditional E-value: 7.5e-61
    TIGR01059  29 kGlhhlvyevvdnaidealaGy.cteievtieed.gsvtvednGrGiPvdihpeegrsalevvltvlhaGGkfdkdsykvsGGlhGvGvsvvnalseklevkvk..rdgkeyrqefer..gepigeleav.geetkktG..tkvsflpdteifetiefdyei...lakrlkelaflnkgvkielederaeslkeeefyyegGikeyvkylnkdkealheeiiyisgekedvevevalqyndaysenilsfanniktreGGthlegfkaaltrvlnsvakkrkllkdeksnltgedireGltavisvkvpdPqfegqtktklgnsevrsiveklvgealtefleenpeeakaivekaleaakareaarkarelvrrksalesstlPGkladcs...skdPseselyiveGdsaGGsakqgrd...rkfqailPlrGkilnvekarldkilkneeikalitalGl..gikeddfdleklryhkivimtdadvdGshirtllltffyrylrelve.qgyvyiaqpPlykvkkgkkdkelvkalylysdkekeeaksqleskkaeleiqrykGlGemnaeq 584
                   Gl+ +  e++ na d+       ++++vti+++ ++++v++nG+GiPv++h++e+    ++++  l +G  fd++  k +GG  G G+   n +s+++ v+     +g ++ q+f +  g++ ++l ++ + ++kk+G  tk++f pd + f +++   ++   l kr+ ++a        ++ ++  ++l  +    +  ik++ +y++  k++  + + +++  ++  ev v+l  +d+   + +sf+n i t +GG h++ +   ++++l s ++k+++     +++t+ +i++ l++ + + v +P f++qtk+ l+n ++      ++++   +fl++     + ive++l+ ak ++     ++  ++k  l       kl d +   skd +++ l + eGdsa   a +g     r +  + Pl+Gk lnv  a  + ++kneeik+++  lGl  g   ++ ++++lry +++im+d d dGshi+ l++ f++ + ++l++ +g++    +P+ kv kgkk+       ++++  + e++k+++ ++ ++ +i+ ykGlG  +a +
  MMETSP1061-20121228|37787_1 162 PGLYKIFDEIIVNAADNKQRDLnMDKLDVTIDAEtNTISVKNNGQGIPVELHQDEQCYVPTLIFGHLLTGSNFDDNEKKTTGGRNGYGAKLANIFSTEFIVECLdsSQGVKFIQTFTNnmGNAGEPLVKKcTAAEKKKGdyTKITFSPDLSRFGMTSLTNDTvglLSKRVYDIA-------GSMANREGKKLAVTLNGKKLPIKSFQDYIKIYKNV--NAPCAFEKVDDMWEVGVSLSSQDGQFMQ-ISFVNSICTYKGGSHVTYVADKVAKSLVSAIEKKNK---GGTKITNAQIKNHLCVFVNCLVNNPTFSSQTKECLTNRKADFNNTCALSD---KFLKQV--AKSDIVENILAFAKFKQNRELKKNNGKKKIKLTGI---DKLDDANkagSKDSRKCTLILTEGDSAKSLAMSGLSvigRDYYGVYPLKGKPLNVRDATHAAVVKNEEIKNVVEILGLkyGTVYSEDNIKELRYGHLMIMADQDHDGSHIKGLIINFIHNFWPSLLDvDGFLQQFITPIVKVTKGKKS------ETFFTLPQYENWKEATGNNGKGWKIKYYKGLGTSTAAD 711
                  69999999********9887652789*****8763789*************************************************************999862268899*****76224555666544133455555559***********988887776111455555544.......3444444333444444445689*******999986..6678889999999******999987666.59***********************99999988764...56779999*****************************9876555544444...455433..23457888777666554444444444444444333...37777653338****************9999988643338899*********************************983344456679**************************************9568888899**********54......4455555566666666667789**********887765 PP

>> TIGR01058  parE_Gpos: DNA topoisomerase IV, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  174.9   8.8   7.4e-55   5.1e-52      31     579 ..     160     710 ..     156     737 .. 0.80

  Alignments for each domain:
  == domain 1    score: 174.9 bits;  conditional E-value: 7.4e-55
    TIGR01058  31 dskGlhhlvweivdnsvdevlag.yadnievtldkd.nsisvqddGrGipveihkkgkistvevvltvlhaGGkfdegayktaGGlhGvGasvvnalsewlevevkr..dgkvyqqrfen.GGkivqsl.kkiGtt.kktG..tlvsfkpdpkifkktefnsniikerlkesafllkdlkleltdkktdkkevffsen..GledfvkylneekevlsevvlfkgekngievevafqyndsesenilsfvnsvktkeGGthenglksaltkvlneyarkvnllkekdknlegsdireGlsavisvripeellqfeGqtkdklfskeakevvdeivedklaffleenkeeakllvkkaikardakeaakkareekksvkkkk.kekgllsGkl...tpaqsknpaknelflveGdsaGGsaklGrd...rkfqailplrGkvlnvekakladilkneeiatlifaiG...tGvgadfsikdlkydkiiimtdadtdGahiqvllltffyrymrpliea.Gkvyialpplyklskkdgkkvkyawsd.leleelkkkl.knytlqrykGlGemnad 579
                   + Gl+++  ei+ n+ d+     + d+++vt+d + n+isv+++G+Gipve+h++ +   +  ++  l +G  fd++  kt+GG  G Ga + n +s  ++ve     +g  + q f+n  G+  + l kk   + kk+G  t+++f pd   f  t+   +++   l +  +   d+  ++ +++ +k  v  + +   +++f +y+   k+v ++   f+  ++  ev v++  +d++  + +sfvns+ t +GG+h + +   ++k l +   k+n    k   +  ++i++ l   ++  +  ++ +f  qtk+ l  ++a    +  ++dk+   +       +++v++++   +     k++re+kk+  kkk k  g    kl     a+sk++ k  l l eGdsa   a  G     r +  + pl+Gk lnv  a  a ++kneei+ ++  +G   + v ++ +ik+l+y+ ++im+d d dG+hi+ l++ f + +   l++  G +   + p+ k++k+++ + +++  + ++ +e   +  k+++++ ykGlG   a 
  MMETSP1061-20121228|37787_1 160 YTPGLYKIFDEIIVNAADNKQRDlNMDKLDVTIDAEtNTISVKNNGQGIPVELHQDEQCYVPTLIFGHLLTGSNFDDNEKKTTGGRNGYGAKLANIFSTEFIVECLDssQGVKFIQTFTNnMGNAGEPLvKKCTAAeKKKGdyTKITFSPDLSRFGMTSLTNDTVG-LLSKRVY---DIAGSMANREGKKLAVTLNGKklPIKSFQDYIKIYKNVNAP-CAFEKVDDMWEVGVSLSSQDGQF-MQISFVNSICTYKGGSHVTYVADKVAKSLVSAIEKKNKGGTK---ITNAQIKNHLCVFVNCLV--NNPTFSSQTKECLTNRKADFNNTCALSDKFLKQV-----AKSDIVENILAFAK----FKQNRELKKNNGKKKiKLTG--IDKLddaNKAGSKDSRKCTLILTEGDSAKSLAMSGLSvigRDYYGVYPLKGKPLNVRDATHAAVVKNEEIKNVVEILGlkyGTVYSEDNIKELRYGHLMIMADQDHDGSHIKGLIINFIHNFWPSLLDVdGFLQQFITPIVKVTKGKKSETFFTLPQyENWKEATGNNgKGWKIKYYKGLGTSTAA 710
                  5679**************987542789******96439********************99***************************************999997541144456667754245554443144433345555559***************9999875.3444444...555566777777776666554116899*****999998776.57899999********9888765.557***************************999999866655...555678999987777766..566899************9999999999875433.....34578888776554....56788888775554413333..45662215689*****************99999886433388***********************************944445677889*************************************98537788889********999886665554055666666666************87664 PP

>> TIGR01055  parE_Gneg: DNA topoisomerase IV, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.9   7.9   9.4e-46   6.5e-43      34     620 ..     167     786 ..     157     792 .. 0.75

  Alignments for each domain:
  == domain 1    score: 144.9 bits;  conditional E-value: 9.4e-46
    TIGR01055  34 laqevldnsvdealaGf.askievilhad.qsievidnGrGipvdihpkedvsaveviltklhaGgkfsnknyefsGGlhGvGisvvnalskrveikv..krdGklykiafek..GakvedlevvetsgkrltG..tsvhfkpdpeifdslkfsvsrlreilrakavlyrGveiefedevenkkalilyedGlkdylaeavnglelliekifvGniegddeavewallwlpedgelltesyvnliptiqGGthvnGlrqalldalrefselrnllpravkltiedildrasyvlsikiqdpqfaGqtkerlssrqvaklvsgvikdafdlflnqdvqaaeklaeiaissaerr.lraakkvvrkkltsklalpGkladc...taqdlektelflveGdsaGGsak...qardreyqailplkGkilnvaevsldkvlasqeiqdlevalaids....dsndlsqlryekiiiladadsdGlhiatlllalflkrlpklve.eGhvyvalpplyrldlske..vyyaldeeekeklleklkkkkakievqrfkGlGemnpaqlre..ttldpekrrlvkltld....d.eedqrvd....................klvddllakkrsedrknflqe 620
                  + +e++ n+ d+        k++v + a+ ++i v +nG+Gipv+ h +e+     +i+ +l +G+ f ++  +++GG  G G  + n +s ++ ++     +G  + ++f +  G+  e l    t++ +++G  t + f pd   f  + ++ + +  +l  + + + G   + e      k+l +  +G k  + +  +  ++  +      +e  d   e  +   ++dg+ ++ s+vn i t +GG+hv  + + + ++l    e +n    ++k+t  +i ++ ++ +   + +p f+ qtke l+ r++       + d+f +      +a   ++e +++ a+++  r+ kk   kk + kl+   kl d    +++d  k  l l eGdsa   a        r+y  + plkGk lnv +++   v++++ei+++   l++       +++ ++lry+ ++i+ad d dG hi  l++ +  +  p l++ +G +   + p+ +++++k+   +++l + e  k      ++    +++ +kGlG  + a  +e  + ld ++  + kl+ld    d +ed+  d                     l+d+++ kkrs+drk++lq+
  MMETSP1061-20121228|37787_1 167 IFDEIIVNAADNKQRDLnMDKLDVTIDAEtNTISVKNNGQGIPVELHQDEQCYVPTLIFGHLLTGSNFDDNEKKTTGGRNGYGAKLANIFSTEFIVECldSSQGVKFIQTFTNnmGNAGEPLVKKCTAAEKKKGdyTKITFSPDLSRFGMTSLTNDTVG-LLSKRVYDIAGSMANRE-----GKKLAVTLNGKKLPIKSFQDYIKIYKNVNAPCAFEKVDDMWEVGVSLSSQDGQFMQISFVNSICTYKGGSHVTYVADKVAKSLVSAIEKKNKG--GTKITNAQIKNHLCVFVNCLVNNPTFSSQTKECLTNRKADFNNTCALSDKFLKQ-----VAKSDIVENILAFAKFKqNRELKKNNGKKKI-KLTGIDKLDDAnkaGSKDSRKCTLILTEGDSAKSLAMsglSVIGRDYYGVYPLKGKPLNVRDATHAAVVKNEEIKNVVEILGLKYgtvySEDNIKELRYGHLMIMADQDHDGSHIKGLIINFIHNFWPSLLDvDGFLQQFITPIVKVTKGKKseTFFTLPQYENWKE--ATGNNGKGWKIKYYKGLGTSTAADAKEyfSNLDLHEIDFEKLSLDvkveDkGEDEDEDedtvmdaqqpvpdvansygaGLIDMVFNKKRSDDRKDWLQK 786
                  56788889988877665157999999876368*******************9999**************************************999873356888899999874467777787777777777765699*********999888877665.44445555555443332.....233333344444333333333333333344467788888888999999***********************************9999998877..9***********99999******************9998887788889887543.....4556789999999999843443443333322.33344588775222789999************886651115678********************************98777765311213455999***************************999**998769**************9985337999877665543..3333333357889**********99994434444444333333331111211221111223333555555565555555899**************996 PP

>> TIGR01063  gyrA: DNA gyrase, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.9   0.1     0.025        17     625     700 ..     512     593 ..     482     621 .. 0.73
   2 !   85.3   0.0     8e-28   5.4e-25      23     196 ..     821     995 ..     802    1000 .. 0.92

  Alignments for each domain:
  == domain 1    score: 0.9 bits;  conditional E-value: 0.025
    TIGR01063 625 irskGiiaikldeeDelisvklvkeede...vlllskkGkavrfkeeevRalgraarGvrgik...lkkedavvslevvkee 700
                   +++G+  ikl+  D+l +++++ ++d+    l+l++  +a  ++ + + ++gr   Gv  +k   l+  da     v +ee
  MMETSP1061-20121228|37787_1 512 KKNNGKKKIKLTGIDKLDDANKAGSKDSrkcTLILTEGDSAKSLAMSGLSVIGRDYYGVYPLKgkpLNVRDATHAAVVKNEE 593
                  46899************99999876665555666666667777889999999999999976663336666666555555444 PP

  == domain 2    score: 85.3 bits;  conditional E-value: 8e-28
    TIGR01063  23 vsRalPdvRDGLkPvhRRilyamkelgltadkaykksarivgdvlgkyhPhGdsavYdalvRmaqdf..slRyplvdgqGnfGs..idgDapaamRYtearlakiaeelledidketvdfvanyDgsekePtvlPsrfPnLLvnGssGiavGmatnipphnlgeiidavlllidnedi 196
                   +R++P + DG kP++R++l++  +  l+ + +  + a  +g+  + yh hG+++++ +++ maq f  s    l+ + G fG+  ++g  +a+ RY  + l+ki++++++  d+e +++ ++ Dg + eP+     +P +LvnGs Gi  G    ip +n + ii  +  +i+ne  
  MMETSP1061-20121228|37787_1 821 CARSIPHIMDGFKPSQRKVLFSCFKRKLKDEIKVAQLAGYIGEN-SAYH-HGEASLHTTIINMAQSFvgSNNINLLTPSGQFGTrrMGGKDAASPRYIFTMLEKITRAIFHPDDDEILNYLSD-DGLSIEPEYYMPVIPMILVNGSDGIGTGWMSKIPNYNPRQIIRNIRNMIKNEPF 995
                  58****************************************97.5799.9****************7778899*********86689*******************************9987.9*******99999*************************************9865 PP

>> TIGR01062  parC_Gneg: DNA topoisomerase IV, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.2   0.1      0.98   6.7e+02     681     707 ..     498     524 ..     489     539 .. 0.70
   2 !   65.1   0.0   1.1e-21   7.3e-19       5     193 ..     804     991 ..     801     996 .. 0.90

  Alignments for each domain:
  == domain 1    score: -4.2 bits;  conditional E-value: 0.98
    TIGR01062 681 llldlkvlskqdslelndGkrkiklkk 707
                   +l +  ++++  l+ n+Gk+kikl  
  MMETSP1061-20121228|37787_1 498 NILAFAKFKQNRELKKNNGKKKIKLTG 524
                  4444555677789999*******9975 PP

  == domain 2    score: 65.1 bits;  conditional E-value: 1.1e-21
    TIGR01062   5 dlrefleeaylnyslyvimdralpfigdGlkpvqrrlvyamselgleasakykksarvvGdvlGkyhphGdsavyealvllaqpf..syryplvdGqGnfGaid.dpksfaamrytesrlskisellleelgkgtvdfrsnfdgtllepkilparlpnlllnGttGiavGmatdipphnlreladaalalid 193
                  ++ +f+++ y+ +s      r++p+i dG+kp qr+++++  + +l+ + k  + a  +G+    yh hG+++ + +++ +aq f  s    l+   G fG+   + k++a+ ry  + l ki+  +++  + +  ++ s+ dg   ep++    +p +l+nG++Gi  G  ++ip +n r++   +  +i 
  MMETSP1061-20121228|37787_1 804 KYSQFINQEYILFSRAD-CARSIPHIMDGFKPSQRKVLFSCFKRKLKDEIKVAQLAGYIGEN-SAYH-HGEASLHTTIINMAQSFvgSNNINLLTPSGQFGTRRmGGKDAASPRYIFTMLEKITRAIFHPDDDEILNYLSD-DGLSIEPEYYMPVIPMILVNGSDGIGTGWMSKIPNYNPRQIIRNIRNMIK 991
                  56788888999888654.68****************************************97.5677.9****************7778999*********96437799*****************************997.9999***998889************************9999877766665 PP

>> TIGR01061  parC_Gpos: DNA topoisomerase IV, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.9   0.0   2.7e-20   1.8e-17      24     192 ..     822     991 ..     800     998 .. 0.87
   2 ?   -3.6   0.2      0.82   5.6e+02     412     448 ..    1225    1261 ..    1201    1302 .. 0.77

  Alignments for each domain:
  == domain 1    score: 60.9 bits;  conditional E-value: 2.7e-20
    TIGR01061  24 dralPdirdGlkPvqrrilyamsklgltfdkpykksaktvGeviGkyhPhGdssiyeamvrmsqdW..knrevlvemhGnnGs..idGdnaaamrytearlskiasellkdidkkvvefvpnfddsekePtvlPalfPnllvnGatGiaaGyatdipPhnlnevldalilrid 192
                   r++P i dG+kP qr++l++ +k  l+ + +  + a  +Ge    yh hG++s++ +++ m+q++   n+  l+   G  G+  + G +aa+ ry  + l ki+  +++  d +++++  + d  + eP     ++P +lvnG+ Gi +G+  +ip +n+ +++  +  +i+
  MMETSP1061-20121228|37787_1 822 ARSIPHIMDGFKPSQRKVLFSCFKRKLKDEIKVAQLAGYIGEN-SAYH-HGEASLHTTIINMAQSFvgSNNINLLTPSGQFGTrrMGGKDAASPRYIFTMLEKITRAIFHPDDDEILNYLSD-DGLSIEPEYYMPVIPMILVNGSDGIGTGWMSKIPNYNPRQIIRNIRNMIK 991
                  3779***********************9999888888888885.5688.****************9545888899999*99965599*******************************9975.77899****999******************************99988886 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 0.82
    TIGR01061  412 qaeaivslrlyrltntdivelkeeeeelekkikelee 448 
                     e ++ ++l++lt   + el+ + +e   +++ele+
  MMETSP1061-20121228|37787_1 1225 GYEYLLGMKLWNLTYEKVEELRRQLAERTAELEELEA 1261
                   56778899**********9999988888888777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1515 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       266  (0.0648464); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.81u 0.14s 00:00:00.95 Elapsed: 00:00:00.60
# Mc/sec: 3332.72
//
Query:       MMETSP1061-20121228|37788_1  [L=1357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.8e-84  279.9   0.0    2.5e-63  212.4   0.0    3.8  4  TIGR00376 TIGR00376: putative DNA helicase
    4.5e-08   29.9   0.0    7.1e-06   22.7   0.0    2.8  2  TIGR01447 recD: exodeoxyribonuclease V, alpha subunit
    8.3e-05   18.5   0.1    0.00064   15.6   0.0    2.2  2  TIGR01448 recD_rel: helicase, RecD/TraA family


Domain annotation for each model (and alignments):
>> TIGR00376  TIGR00376: putative DNA helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   1.8      0.29   3.9e+02     241     346 ..     297     399 ..     291     415 .. 0.47
   2 ?    0.7   0.0     0.021        29      20     122 ..     584     708 ..     567     723 .. 0.62
   3 !   60.5   0.0   1.7e-20   2.3e-17     144     245 ..     785     897 ..     776     902 .. 0.80
   4 !  212.4   0.0   1.8e-66   2.5e-63     340     631 ..     927    1217 ..     907    1222 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.29
    TIGR00376 241 slkrhsLdalienhekyqkvkdirekidelieerekklkpskqkrrglsdiklLrkalkkreargikklki.asmvevietnksidrllkklkeaeerivdeilees 346
                  s  ++s +  ie+++k  +v++ +   + +    +    p  + ++  s +k  +k+++k +   ++++ i  + v+++e+ k+i  +  +++  + +++ + +e s
  MMETSP1061-20121228|37788_1 297 SALEDSFADDIEEEKKEMSVAEDEPRANCVADTNN---APPVKPSKSSSKKKSKKKNKSKNSTPQVQDEAIvENEVTATEAIKAIPAQEVSITS-DTKVQMRRIESS 399
                  55555555555555555555555555555544422...22222233334444445555555555555554314556666666666666666653.334433333222 PP

  == domain 2    score: 0.7 bits;  conditional E-value: 0.021
    TIGR00376  20 lkkrerkgrailnlkgk..irgell....GkllvkfgrrkaveteisvGDivlvs.........ksnplksdltgvvvkvgkkfitvaleesvpkyslkk.......vridkyandvtfkRlkea 122
                   ++++r+ +++  +++k   + +++    G +l  f +    +  i++GD v +          ++   ++ ++++v++     + +    +   y++         +r+dk+an + f+R  +a
  MMETSP1061-20121228|37788_1 584 CERLVRSAVCVVAVRLKrgKKPNEMvvqpGDQLGIFVPDSMENRGIQAGDAVSILpyagpypmsAESLDRNMIEATVTNTNPMVLRLQDKMNASLYAMLTedadgniYRVDKLANRMGFNRQLSA 708
                  556666666666666552222222112224445555555666777889999999999999999755555566666666665555555433333334332223456689************97765 PP

  == domain 3    score: 60.5 bits;  conditional E-value: 1.7e-20
    TIGR00376 144 skisevedlqaid..knLnesqkeAvkfAvsskdlaliHGPpGtGktrtlvElirq.......evkkgk...rvLvtaesniavDnllErlakldlkivRlGHPaRllkslkrh 245
                  s++     lq++   + Ln sq  Av+ Av++  l+l+ GPpGtGkt   + +++        e  +g+    +L+t++sniavDnl+E  a + l++vRlG P+ +  +l r 
  MMETSP1061-20121228|37788_1 785 SRMASNLALQKYRalEGLNASQSLAVQGAVTN-RLTLVQGPPGTGKTAVAIRILQHwarlaksEATNGEspsPILATSDSNIAVDNLVEGCAAVGLQVVRLGRPEAIRPELLRF 897
                  55556666777776678**************9.8**************9999987522211113344446778********************************998888775 PP

  == domain 4    score: 212.4 bits;  conditional E-value: 1.8e-66
    TIGR00376  340 deileesdvvlstnssaaleilk..eFDvvviDEasqAlepsvliPlvka.rklilAGDhkqLPPtvlsed..aeeLektLferlikkypersklLnvqYRmnekimefpskefYngklkAdesv.anillrdlvkeeateveedledkiPllfidtsglelleakekdstskynegEvelvkeiikeLvklg.vpeeeigvisPYdaqvdllrkll.....eekkidiEvssvDGFqGREkeviilslvRsnrkgevGFLkdlRRlnvaltRarRklivigdsevlk..ankvlkrlieyvkkkg 631 
                    + l+++++v  t   ++ +il+  +FD v++DEa+qA+ep vl+Pl+++ r+l+l GDh qLPPtvls     e+    Lf r++   +    +L+ qYRm++ i  fps+ fY gkl+   s  +++ l   +            ++ P+ f+ ++g+e+     +d  sk ne E++ +   + +L++ g     +i+v++PY aq +l+r++      +  +  iEvssvDGFqGREk++++ s vRsn+ g +GF  d RR+nv+ tRarR livig+ ++l+     ++  +  ++  +g
  MMETSP1061-20121228|37788_1  927 MKALKKAQIVCCTCIGSGGDILDtmTFDRVLVDEATQATEPAVLVPLMRGcRQLVLVGDHCQLPPTVLSTRaeEEGHGVPLFSRMVAC-GVPPFMLDTQYRMHPCIAMFPSDLFYGGKLLNGVSApERRPLAGFPWP---------REEFPVAFVPVKGVEM-----DDGVSKMNEAEAAAACDAVAALLSGGqCTPSDIAVVTPYAAQARLIRRMTrrltqNSGQGYIEVSSVDGFQGREKQAVVFSAVRSNDYGAIGFAGDWRRVNVSFTRARRALIVIGNDQTLRrgDPDTWMPWLAWADAHG 1217
                   34678899999999888888888889***********************7469****************88434556678*****974.556789************************988776245556665543.........3568**********99.....8899******************9976377899***************88754443334557***********************************************************9655567788888887776 PP

>> TIGR01447  recD: exodeoxyribonuclease V, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   5.2e-09   7.1e-06     138     192 ..     791     845 ..     729     853 .. 0.82
   2 !    3.9   0.0    0.0025       3.4     262     303 ..     952     991 ..     949     994 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 5.2e-09
    TIGR01447 138 aalenlfplleeenlqkvavalalksnfslitGGPGTGKTttvarlllalikqsk 192
                   al+++ +l   ++ q +av+ a++++++l+ G PGTGKT ++ r+l+  +  +k
  MMETSP1061-20121228|37788_1 791 LALQKYRALEGLNASQSLAVQGAVTNRLTLVQGPPGTGKTAVAIRILQHWARLAK 845
                  45666666666667677******************************87666555 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0025
    TIGR01447 262 plDvlvvDEaSMvdlelmakLlealkketkLIllGDknQLas 303
                   +D ++vDEa   + +  a L+  +++  +L+l+GD+ QL++
  MMETSP1061-20121228|37788_1 952 TFDRVLVDEATQATEP--AVLVPLMRGCRQLVLVGDHCQLPP 991
                  5677888888766655..568888899999***********8 PP

>> TIGR01448  recD_rel: helicase, RecD/TraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.7e-07   0.00064     321     366 ..     799     844 ..     772     858 .. 0.84
   2 ?   -0.4   0.0     0.032        44     439     457 ..     972     991 ..     945     995 .. 0.66

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.7e-07
    TIGR01448 321 elelseeqkealktaiqdkvviltGGPGtGKtTvtkaiielaeele 366
                    +l+++q  a++ a+ ++++++ G PGtGKt v   i++++++l 
  MMETSP1061-20121228|37788_1 799 LEGLNASQSLAVQGAVTNRLTLVQGPPGTGKTAVAIRILQHWARLA 844
                  457999**********************************998875 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.032
    TIGR01448 439 avpdda.rlllvGDadqLPs 457
                   +  ++ +l+lvGD+ qLP+
  MMETSP1061-20121228|37788_1 972 PLMRGCrQLVLVGDHCQLPP 991
                  4444552699*********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       274  (0.0667967); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.73u 0.13s 00:00:00.86 Elapsed: 00:00:00.43
# Mc/sec: 4165.33
//
Query:       MMETSP1061-20121228|37789_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00036   17.6   0.0    0.00054   17.1   0.0    1.3  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
      0.009   12.9   0.3      0.036   10.9   0.0    1.8  2  TIGR01622 SF-CC1: splicing factor, CC1-like family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.6e-07   0.00054     280     355 ..     123     195 ..     114     226 .. 0.78

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.6e-07
    TIGR01628 280 kekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmldekekSkgFGFVcfssqeeAnkAvtelhgkilngkP 355
                   +k   +Nl +  l + +    L ++ e++G+++++ v       S+ +G V+f++ eeA+k  + +hg  l  k 
  MMETSP1061-20121228|37789_1 123 AKKITSPNLMLFGLHPLIKAPPLEKMLEDYGTVVAVTVRSAF--ASR-YGHVTFQTVEEAQKCYSAIHGAKLLHKT 195
                  456677888888888889999999999999999888775443..454.8999999999999999999995544444 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.6     0.067   1.4e+02     298     355 ..      15      75 ..       6     110 .. 0.49
   2 !   10.9   0.0   1.7e-05     0.036     216     319 ..     125     226 ..     114     250 .. 0.72

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 0.067
    TIGR01622 298 Dvteesdaslaskfeds...fdeseqsgldln.teereqldekldrddekgsgalaiagtds 355
                  D+ ee++a++     +s    + s   g+++  t++    ++k+d++ + g+  +a+  +ds
  MMETSP1061-20121228|37789_1  15 DSAEEKNATSSGARGESaatEQSSTSNGAEGPpTNSSMDGKRKIDEGPTVGT-KSALSTADS 75 
                  4444433332222222211112222333333313334444567777766555.444444443 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 1.7e-05
    TIGR01622 216 siadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD..vteesdaslaskfedsfdese 319
                   i+   L + +lh  i    L ++ e +G +  v ++    +     yG ++F+  eea++   ++ G  l  ++  v  +    +   s++++a+k e ++ +++
  MMETSP1061-20121228|37789_1 125 KITSPNLMLFGLHPLIKAPPLEKMLEDYGTVVAVTVRSAFAS----RYGHVTFQTVEEAQKCYSAIHGAKLLHKTFMVQPGARvpSVASSTTDSAPKDEKKISDTK 226
                  46666777888999999999************9999876555....6*************************9999998766633445555555555555544433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1279.28
//
Query:       MMETSP1061-20121228|37790_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.21
# Mc/sec: 1747.28
//
Query:       MMETSP1061-20121228|37792_1  [L=437]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.046   11.5   6.2       0.57    8.0   4.3    2.4  2  TIGR02131 phaP_Bmeg: polyhydroxyalkanoic acid inclusion protein PhaP


Domain annotation for each model (and alignments):
>> TIGR02131  phaP_Bmeg: polyhydroxyalkanoic acid inclusion protein PhaP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.3   0.00014      0.57       4     144 ..     154     303 ..     151     323 .. 0.75
   2 ?   -1.4   0.0      0.11   4.5e+02       7      31 ..     319     343 ..     313     347 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00014
    TIGR02131   4 kkyetlvdalwkqwskslsliadankqleqltlkalkqqqealtklve.qld..elekelkaele.dlqqktveylkklaG....naladsieewtdktkellaklqeltvsqsksslsllkqaseqy.eevvkqlveeqkktreeaqkv 144
                  kk+e+l+d++ +   k+l+++++ + +l + t   +k  qe+ +kl e qld  e +k+lk+  e +l  + + ++    G      l+  i e ++ ++    +l + +v+++    + lk+ s+   ++  + l+e+qk   +e+   
  MMETSP1061-20121228|37792_1 154 KKFESLLDSVDDFVEKTLKKLSKDGHKLYKNTKAEIKMIQEFYEKLKEaQLDggEYQKQLKEFCEsKLPSQNIGNIDDNVGficeGLLDKGISELKKTVEKGYVELYKQVVDKTENYGAELKKFSDGLkKKSLNYLIEHQKEYENEILLI 303
                  799******************************************987478744678999998763688898888888777332133455688988888888999999999999887777777665551567888999999988886533 PP

  == domain 2    score: -1.4 bits;  conditional E-value: 0.11
    TIGR02131   7 etlvdalwkqwskslsliadankql 31 
                  + l++a  ++++  l+ ia+a  q+
  MMETSP1061-20121228|37792_1 319 KKLIEACAEDFTMDLDAIAEACFQI 343
                  45899999***********999887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (437 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       290  (0.0706972); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 1696.45
//
Query:       MMETSP1061-20121228|37794_1  [L=585]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (585 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2969.75
//
Query:       MMETSP1061-20121228|37795_1  [L=642]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (642 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.12s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 3026.32
//
Query:       MMETSP1061-20121228|37796_1  [L=1580]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1580 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.60u 0.11s 00:00:00.71 Elapsed: 00:00:00.49
# Mc/sec: 4255.98
//
Query:       MMETSP1061-20121228|37797_1  [L=421]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (421 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       293  (0.0714286); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 2415.97
//
Query:       MMETSP1061-20121228|37793_1  [L=458]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   4.4e-109  362.7   0.8   5.1e-109  362.5   0.5    1.0  1  TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II
    1.4e-21   72.8   2.8    1.8e-21   72.5   2.0    1.1  1  TIGR02813 omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
  ------ inclusion threshold ------
      0.012   12.3   0.7      0.033   10.9   0.2    1.8  2  TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR03150  fabF: beta-ketoacyl-acyl-carrier-protein synthase II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  362.5   0.5  3.7e-112  5.1e-109       1     406 [.      39     451 ..      39     452 .. 0.94

  Alignments for each domain:
  == domain 1    score: 362.5 bits;  conditional E-value: 3.7e-112
    TIGR03150   1 rrvvvtGlGlvtplgndveetwenllagksgikkitkfdasdlkvkiag..evkdfdpeeyldkkearrldrfiqyalaaakealedagleleee.daervgvivgsGiGGletieeqakklkekg...prrvsPffipsaiinlaagqvsiklglkgpnlavvtACatgthaigeaarlikegeadvmiagGaeaaitelgiagFaalkalst.rnddpekasrPfdkdrdGFvlgeGagvlvlEelehAkaRgAkiyaevvGyglsaDAyHitapaeegegaaramkaalkdaglk...peevdyinaHgtstplgdkaEtkaikkvfgehakklavsstKsmtGHlLGaaGaveavitvlaleeqvvpptinleepdeecdldyvpnkareakievalsnsfGFGGtnaslvl 406
                  rrvvvtG+G+v+ lgn+ e++ ++l +++ gi+  ++f   d+k+++ag  ++++ d ++++ k   r + +  +ya +a ++a++dagl+ e+  ++ rv+ i+g G   ++ i e+ ++++ +    +++v Pf +  ++    ++ ++ ++ ++gp++++++AC+tg+h+ig++++ ik +++d++ +g+ e+   ++  + F  + alst +nd+p++asr fdk rdGFv++ G+g++vlEelehAkaRgAkiyae+vGy++++D y + ap+  g g +++m+ al+da+ +    + vdyin+Hgtstp+gd aE+ aik++f+++ ++ +v stKs  GH LGaaG  ea++++l ++++++ +  n++e  +e +   + ++ ++  ++ a+snsfGFGGtn +lv+
  MMETSP1061-20121228|37793_1  39 RRVVVTGMGIVSCLGNTLEDVKKSLYDANPGISFQQEFADLDIKSNVAGvpDLTEKDFKQLIPKTALRFMGQNGKYAYVALDRAIQDAGLKPEDYeQNPRVAAIIGQGGTSIPDIVETCDAVQGQAkrwKNKVGPFRVTRSMGSTCSAVLATSFKVQGPSYSISSACSTGAHCIGTGFEQIKLNKVDMAFCGAGENVNWQF-TSMFDCMGALSTsYNDNPKTASRAFDKTRDGFVIAGGGGMVVLEELEHAKARGAKIYAELVGYAANSDGYDMVAPS--GVGGEQCMQLALEDAERNgggDKPVDYINTHGTSTPVGDLAELGAIKRLFEKKGYHPNVGSTKSLSGHSLGAAGVQEAIYSLLMMDNDFMAESANINELVDEAEGMNILTERKDGPFQRAMSNSFGFGGTNCALVF 451
                  7***********************************************94457788999*******************************776652678*********99****999999886555111679***********************************************************9999877776.578*********99**********************************************************9987..999************986332578****************************************************************************9999777888999**********************9 PP

>> TIGR02813  omega_3_PfaA: polyketide-type polyunsaturated fatty acid synthase PfaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.5   2.0   1.3e-24   1.8e-21     180     463 ..     179     455 ..     155     458 .] 0.83

  Alignments for each domain:
  == domain 1    score: 72.5 bits;  conditional E-value: 1.3e-24
    TIGR02813 180 slGnvisGrianrfdlGGmncvvdaacaGslaalrlalselvegrsevmitGGvctdnspfmymsfsktpafttn......ediqpfdidskGmmiGeGiGmvalkrledaerdGdriyavikGvGassdGkfksiyaprpeGqakalkraydda...GfapktvGlieahGtGtaaGdvaefsGlssvfsqdndqkqhialGsvksqiGhtkstaGtaGlikaalalhhkvlpatinvdkpnpkldiedsplylntetrpwlqredglprraGissfGfGGtnfhlvleeys 463
                  s+G   s  +a  f + G    + +ac+     +   + ++  ++ ++   G     n  f  m f    a++t+         + fd    G +i  G Gmv l  le a+  G +iya + G  a sdG    + ap   G  + ++ a +da   G   k v  i++hGt t  Gd ae++ +++ f +   +  h  +Gs ks  Gh+  +aG    i + l +    +  + n+++    l  e   + + t      +r+dg  +ra   sfGfGGtn  lv+++y 
  MMETSP1061-20121228|37793_1 179 SMGSTCSAVLATSFKVQGPSYSISSACSTGAHCIGTGFEQIKLNKVDMAFCGAGENVNWQFTSM-FDCMGALSTSyndnpkTASRAFDKTRDGFVIAGGGGMVVLEELEHAKARGAKIYAELVGYAANSDGY--DMVAPSGVGGEQCMQLALEDAernGGGDKPVDYINTHGTSTPVGDLAELGAIKRLFEK---KGYHPNVGSTKSLSGHSLGAAGVQEAIYSLLMMDNDFMAESANINE----LVDEAEGMNILT------ERKDGPFQRAMSNSFGFGGTNCALVFDKYL 455
                  6778888888888888888888888888888888888888888888888888655555544444.455555555311111134578*********************************************5..789*****************9666667899**************************76...56899*******************99*9999999999999999865....433555565555......599************************996 PP

>> TIGR01930  AcCoA-C-Actrans: acetyl-CoA C-acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.2   2.4e-05     0.033      63     113 ..     185     235 ..     175     267 .. 0.88
   2 ?   -1.6   0.0      0.16   2.1e+02     245     276 ..     275     306 ..     262     332 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.4e-05
    TIGR01930  63 eaalaaglpesvpaltvnrvCaSglqAvalaaqkikaGeadvvvaGGvEsm 113
                   a+la+ ++ + p+++++ +C++g + + ++ ++ik  + d++  G  E++
  MMETSP1061-20121228|37793_1 185 SAVLATSFKVQGPSYSISSACSTGAHCIGTGFEQIKLNKVDMAFCGAGENV 235
                  58999**************************************99998876 PP

  == domain 2    score: -1.6 bits;  conditional E-value: 0.16
    TIGR01930 245 DGAaalllmseevakelgltplarivsaavag 276
                   G ++++l + e ak+ g ++ a++v++a  +
  MMETSP1061-20121228|37793_1 275 GGGGMVVLEELEHAKARGAKIYAELVGYAANS 306
                  6888999999999************9998654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (458 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.41
# Mc/sec: 1474.41
//
Query:       MMETSP1061-20121228|37798_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.12s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2607.92
//
Query:       MMETSP1061-20121228|37800_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00011   18.2   1.0    0.00014   17.9   0.7    1.1  1  TIGR03311 Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
     0.0023   15.7   0.2      0.004   14.9   0.2    1.4  1  TIGR03193 4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
      0.003   14.2   0.1     0.0042   13.8   0.1    1.1  1  TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
     0.0047   14.2   0.2     0.0069   13.7   0.1    1.2  1  TIGR03198 pucE: xanthine dehydrogenase E subunit


Domain annotation for each model (and alignments):
>> TIGR03311  Se_dep_Molyb_1: selenium-dependent molybdenum hydroxylase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.7   1.4e-07   0.00014      31      60 ..     126     155 ..     115     177 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1.4e-07
    TIGR03311  31 vknGcaeGacGactvlvnGkavkaclftve 60 
                  +k Gc++G cG c  ++nGk v+ c+ +v 
  MMETSP1061-20121228|37800_1 126 IKYGCGKGECGVCECMMNGKWVRPCVEKVP 155
                  699**********************98874 PP

>> TIGR03193  4hydroxCoAred: 4-hydroxybenzoyl-CoA reductase, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.2   3.9e-06     0.004      25      59 ..     115     151 ..     104     178 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.9e-06
    TIGR03193  25 lrdvvgltg..vkqgcdggecgactvlvdgeprlacl 59 
                  +rdv+  +g  +k gc  gecg c  +++g+ +  c+
  MMETSP1061-20121228|37800_1 115 IRDVASQAGqyIKYGCGKGECGVCECMMNGKWVRPCV 151
                  5788877775579******************999997 PP

>> TIGR02160  PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.1   4.1e-06    0.0042     267     312 ..      97     142 ..      75     148 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 4.1e-06
    TIGR02160 267 vtldGlsreislsaedesvldaalraradlPfackgGvcgtcrakv 312
                  v   G ++ +s+  + + + d+a +a++ + + c  G cg c + +
  MMETSP1061-20121228|37800_1  97 VFRQGNETRTSMAWAGQPIRDVASQAGQYIKYGCGKGECGVCECMM 142
                  45678888999999999**************************964 PP

>> TIGR03198  pucE: xanthine dehydrogenase E subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.1   6.7e-06    0.0069      36      62 ..     126     152 ..     102     175 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.7e-06
    TIGR03198  36 tkvscgigrcgacavlvdgkvanacll 62 
                   k  cg g cg c  +++gk +  c+ 
  MMETSP1061-20121228|37800_1 126 IKYGCGKGECGVCECMMNGKWVRPCVE 152
                  5889******************99985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1187.90
//
Query:       MMETSP1061-20121228|37801_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.31
# Mc/sec: 3052.78
//
Query:       MMETSP1061-20121228|37799_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0058   12.9   0.1      0.045   10.0   0.0    1.9  2  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit


Domain annotation for each model (and alignments):
>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    0.5   0.0    0.0079        33     474     488 ..      74      88 ..      62     101 .. 0.77
   2 !   10.0   0.0   1.1e-05     0.045     531     612 ..     161     246 ..     158     267 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.5 bits;  conditional E-value: 0.0079
    TIGR02442 474 lvifvvDASgSMaar 488
                  l i vvD SgSM + 
  MMETSP1061-20121228|37799_1  74 LRIWVVDNSGSMMTG 88 
                  5699********875 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 1.1e-05
    TIGR02442 531 svelakreLeelptggrtPLaagLkk..aaevlknellkdkderplvvvitDGr.aNva.slgedpledartlaeklaaegiklvv 612
                   +++a +++++++  g tPL++  ++  a  ++   +l+++++++++v+ tDG  +N a   g+ + ++ +++ ++l    + +vv
  MMETSP1061-20121228|37799_1 161 DLNVALQTIRSVSPSGVTPLSEHVREirANVLAMLDQLSETGQKVVIVLATDGLpSNYAgYSGQYERNEFKDALRSLEGLPVWIVV 246
                  678899999*************99872133445567899999***********636777446666777777776666666555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1945.62
//
Query:       MMETSP1061-20121228|37802_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   12.1   0.0      0.071   10.7   0.0    1.7  1  TIGR02797 exbB: tonB-system energizer ExbB


Domain annotation for each model (and alignments):
>> TIGR02797  exbB: tonB-system energizer ExbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   1.7e-05     0.071     106     141 ..     339     374 ..     318     382 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 1.7e-05
    TIGR02797 106 rieaaagrrlsrGtGvlatiGavaPfvGlfGtvWGi 141
                   ++a a+++++rGt vl t G  + + G++G v+G 
  MMETSP1061-20121228|37802_1 339 SFVASASKKIRRGTEVLITRGNSGDLFGIYGFVYGD 374
                  56899*****************************95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.16s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 3007.47
//
Query:       MMETSP1061-20121228|37803_1  [L=583]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (583 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       256  (0.0624086); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 2564.99
//
Query:       MMETSP1061-20121228|37804_1  [L=293]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (293 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1611.37
//
Query:       MMETSP1061-20121228|37805_1  [L=817]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (817 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       322  (0.0784983); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.37
# Mc/sec: 2914.46
//
Query:       MMETSP1061-20121228|37808_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1016.32
//
Query:       MMETSP1061-20121228|37806_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 1787.35
//
Query:       MMETSP1061-20121228|37807_1  [L=246]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (246 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1352.89
//
Query:       MMETSP1061-20121228|37810_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-14   50.7   0.0    5.9e-14   50.4   0.0    1.1  1  TIGR02933 nifM_nitrog: nitrogen fixation protein NifM


Domain annotation for each model (and alignments):
>> TIGR02933  nifM_nitrog: nitrogen fixation protein NifM
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   1.4e-17   5.9e-14     128     217 ..      92     177 ..      76     180 .. 0.89

  Alignments for each domain:
  == domain 1    score: 50.4 bits;  conditional E-value: 1.4e-17
    TIGR02933 128 hlLltvneddreavrerieallrrlrakreafaelaerhseCPtalegGlLGwvsrGlLypeLdaaLfqlaegeLsavieselGwhlLlC 217
                  h+L+       ea+ +++e l+  + +++ afa+ a ++s CP+   gG LG  ++G +  e d+ +f+   ge+  +i+++ G+hl++ 
  MMETSP1061-20121228|37810_1  92 HILIKG---GAEAA-NKLEDLKTEIGDSPVAFAKAAAQYSACPSGRSGGDLGSFGPGAMVKEFDQVVFNESIGEVHGPIKTQFGYHLIYI 177
                  665543...45554.689*********************************************************************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1091.91
//
Query:       MMETSP1061-20121228|37811_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 2611.78
//
Query:       MMETSP1061-20121228|37809_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-36  124.5   0.1    6.5e-36  121.8   0.0    1.9  1  TIGR02748 GerC3_HepT: heptaprenyl diphosphate synthase component II
    6.5e-35  118.5   0.0    9.5e-35  118.0   0.0    1.2  1  TIGR02749 prenyl_cyano: solanesyl diphosphate synthase


Domain annotation for each model (and alignments):
>> TIGR02748  GerC3_HepT: heptaprenyl diphosphate synthase component II
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.8   0.0   3.2e-39   6.5e-36      18     248 ..      63     317 ..      53     335 .. 0.73

  Alignments for each domain:
  == domain 1    score: 121.8 bits;  conditional E-value: 3.2e-39
    TIGR02748  18 kelekavqa....eaevlkeaalellkaGGkrirPvfvllagklg...dydldklk.kvavalelihmaslvhddv..iddaelrrGketikskwdnriamytGdyllaksletiteie.dprvh..kilsktivev..clGe...i.eqikdky.....nfdqnlrtylrrik.rktalliaascqlGaivagadeeivkklyyfgyyvGmsyqiiddildfvgteeelGkPaGedllqGnvtlPvlyaledeal 248
                  + l+++v++    ++++++e     l aGGkr+rPv+ l a+++    + + +++    avale+ih  sl+hdd+  +d+ +lrrGk+t +  +++ +a+  Gd ll+ s++ i+e + + +v   kil ++++ v  c G    +  q+ d              + l+ i+  kta l+ ++   Gai aga+ee+v++  +f+  +G+++q+ ddild +++ e+lGk a +dl     t P l  l+  ++
  MMETSP1061-20121228|37809_1  63 AMLKESVKSidppNTDLVSECMEYSLMAGGKRVRPVLCLAAAEMFassKEEAEAVAlPTAVALEMIHTMSLMHDDLpsMDNDDLRRGKPTSHVVYGEDLAILGGDALLSTSFQWIAEHTpQDKVDpvKIL-DVVTRVgkCVGAkglVgGQVLDLLcegkrGKRDVTVDDLKWIHtHKTAALLVVAVSCGAILAGATEEEVEACERFALNIGLAFQVADDILDVTASTEDLGKTAAKDLEADKTTYPKLLGLDGARA 317
                  4455555542222778899999999*************9998765122334444432468***************7669**********************************99875313333311333.333333224433111323554433111102222233568888636999887777777************************************************************99987664 PP

>> TIGR02749  prenyl_cyano: solanesyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.0   4.6e-38   9.5e-35      18     249 ..      66     314 ..      52     338 .. 0.82

  Alignments for each domain:
  == domain 1    score: 118.0 bits;  conditional E-value: 4.6e-38
    TIGR02749  18 tknlkslvGakhPilsaaaehlfeagGkrlrPaivllvsrataeee.eltarhrrlaeitelihtaslvhddv..vdesdvrrgvetvhslfdtrvavlaGdflfaqaswylan......lenlevvkllskv...i..kdfaeGeikqgl...nrfdsdlsledyleksyyktaslvaasskaaavlsevdsevaedlyeyGkhlGlafqvvddildftgsteklGkPaasdlkkGnltaPvlfalee 249
                  ++ +ks+   +  ++s   e  + agGkr+rP + l  +   a+++ e +a     a   e+iht sl+hdd+  +d+ d+rrg++t h  +++ +a+l Gd l++ +  ++a+      ++ + +++++++v   +  k +  G++   l   +r + d++++d      +kta+l+  +  + a+l+ + +e +e+  ++  ++Glafqv ddild+t+ste+lGk aa dl+  + t P l  l+ 
  MMETSP1061-20121228|37809_1  66 KESVKSIDPPNTDLVSECMEYSLMAGGKRVRPVLCLAAAEMFASSKeEAEAVALPTAVALEMIHTMSLMHDDLpsMDNDDLRRGKPTSHVVYGEDLAILGGDALLSTSFQWIAEhtpqdkVDPVKILDVVTRVgkcVgaKGLVGGQVLDLLcegKRGKRDVTVDDLKWIHTHKTAALLVVAVSCGAILAGATEEEVEACERFALNIGLAFQVADDILDVTASTEDLGKTAAKDLEADKTTYPKLLGLDG 314
                  455556666666677777888899************999988776625556667788899************8779********************************999996333333455555555566621122245566776655422257789******999999********9999***********************************************************9998874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 1659.29
//
Query:       MMETSP1061-20121228|37812_1  [L=1027]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1027 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.14s 00:00:00.59 Elapsed: 00:00:00.36
# Mc/sec: 3765.36
//
Query:       MMETSP1061-20121228|37813_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 2101.27
//
Query:       MMETSP1061-20121228|37814_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00056   18.0   2.7    0.00056   18.0   1.9    2.2  3  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
  ------ inclusion threshold ------
      0.028   12.6   0.4      0.091   11.0   0.3    1.8  1  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   1.9   2.7e-07   0.00056       2      24 ..      46      70 ..      45      77 .. 0.65
   2 ?   -3.6   0.1         2   4.1e+03      14      25 ..      98     105 ..      98     109 .. 0.60
   3 ?   -2.9   0.0       1.2   2.4e+03      13      20 ..     265     272 ..     260     277 .. 0.53

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 2.7e-07
    TIGR01409  2 sRRdFLkaaaaagaaaglgl..llp 24
                 +RRd L+++a a+aaa++ +   ++
  MMETSP1061-20121228|37814_1 46 TRRDVLGGLASAAAAAAFVGagIVS 70
                 9********6666666654336333 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 2
    TIGR01409  14 gaaaglglllps 25 
                  g+++g++    s
  MMETSP1061-20121228|37814_1  98 GGTMGVS----S 105
                  5666665....4 PP

  == domain 3    score: -2.9 bits;  conditional E-value: 1.2
    TIGR01409  13 agaaaglg 20 
                  a++++g +
  MMETSP1061-20121228|37814_1 265 AVVLVGSA 272
                  44444443 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.3   4.5e-05     0.091       7      30 ..      43      66 ..      38      88 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.5e-05
    TIGR02811  7 adlsRRdLLkglavgaaagavaaa 30
                 +   RRd L gla +aaa+a ++a
  MMETSP1061-20121228|37814_1 43 ESFTRRDVLGGLASAAAAAAFVGA 66
                 5668**********9999998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1700.02
//
Query:       MMETSP1061-20121228|37816_1  [L=1237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-10   37.2   0.2    7.9e-07   25.9   0.0    2.4  2  TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL


Domain annotation for each model (and alignments):
>> TIGR03300  assembly_YfgL: outer membrane assembly lipoprotein YfgL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.8   0.1   3.1e-05      0.13     114     155 ..     183     223 ..     170     244 .. 0.92
   2 !   25.9   0.0   1.9e-10   7.9e-07      95     209 ..     373     521 ..     327     528 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 3.1e-05
    TIGR03300 114 kgevialdaedGkelWrakvssevlsaplvanglvvvrtsdg 155
                  k+ via+++ dG+  W  +vs+ +   p+v ++ + v+ +d+
  MMETSP1061-20121228|37816_1 183 KSRVIAVNM-DGSFRWSVEVSGRIEGSPVVGENGIYVTHNDS 223
                  689*****9.***********************999998885 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 1.9e-10
    TIGR03300  95 e.....................rlsgGvtad..gglvlvgtekgevialdaedGkelWrakvssevlsaplv..ang....lvvvrtsdgrvtaldaetGeklWsyerevpaL.....tlRgsaspviadgvvlvgfanGklvalnlet 209
                  +                     +l++ +t+d   +l+++ + +++ + +++++G+++Wr +  s+v+++p +  a+g    +  ++t +grv  +d  tG++ W y+ +  +      ++ ++ +++  +++++ g   G+++al++++
  MMETSP1061-20121228|37816_1 373 RereifprwnyqvatnprntsqPLRSQPTLDleTELLVIPGVSADFYCIQSDNGRQVWRDNQGSQVMAQPRIfvAEGwrkvVYAIETLNGRVRQYDLLTGRRFWDYSCADISEqmcrdAVEAEFAITQSGNTIYYGDIYGRVNALTVAN 521
                  3455555555555555666666899999988657789999******************************6533554332133589*******************98654433001115566667777799999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.53u 0.11s 00:00:00.64 Elapsed: 00:00:00.42
# Mc/sec: 3887.39
//
Query:       MMETSP1061-20121228|37815_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-97  324.3   0.0    1.8e-97  323.6   0.0    1.4  1  TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase
    8.6e-59  197.6   0.0    1.2e-58  197.1   0.0    1.2  1  TIGR00563 rsmB: ribosomal RNA small subunit methyltransferase B
      1e-06   26.5   0.0    1.8e-06   25.7   0.0    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
    0.00021   18.7   0.0    0.00039   17.8   0.0    1.4  1  TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J
    0.00082   17.5   0.0      0.002   16.2   0.0    1.6  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit


Domain annotation for each model (and alignments):
>> TIGR00446  nop2p: NOL1/NOP2/sun family putative RNA methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  323.6   0.0  2.2e-100   1.8e-97       1     264 []     258     534 ..     258     534 .. 0.97

  Alignments for each domain:
  == domain 1    score: 323.6 bits;  conditional E-value: 2.2e-100
    TIGR00446   1 iRvntLkievedllerleergvklkkteeegaf..evkesalsigatpeyllGlyllqeassmlPvlalepeekervlDlaaaPGgkttqisallkneGaivanevsksRvkvLianinRlGvlnvavinvDgRkfgavvlk..fDriLlDaPCsgeGvirkdksrkknrseedikeisklqkeLllaaidalkk....gGvlvYstCsleveeneevvdyllrkrkdvvev..lalgdealtankak...eevkkalrvyPqsedveGFFvaklrk 264
                  iR+ntLk++++dl+  l +rgv+l ++ ++ ++  +++es++++gatpeyl+G+y+lq+a+sm Pvlal+p++kervlD++aaPGgkt +i++l++n+G ++an+++++R k+  an++RlGv nv+ +  DgRk+ ++ ++  fDriLlDaPCsg Gvi +d+s+k++r+  d+k+ ++lqkeLllaaid+l++    gGv+vYstCs++v eneevv+y+l+kr+  +    l  g  a+t +++k   ++v k++r+yP+ ++++GF+vak+rk
  MMETSP1061-20121228|37815_1 258 IRTNTLKTRRKDLALALMKRGVSLDPLASWSKVglKIMESPVPVGATPEYLSGHYMLQSAASMCPVLALSPQPKERVLDMSAAPGGKTSYIAQLMRNTGVVFANDLRADRQKATVANMHRLGVRNVITCMHDGRKLAKLFQQfkFDRILLDAPCSGLGVISRDPSVKVQRTIADVKKTAHLQKELLLAAIDVLNHksktGGVMVYSTCSISVAENEEVVNYALEKRDIKIIDteLDFGTPAFTRYQQKrfhPSVAKTRRFYPHVHNMDGFYVAKIRK 534
                  8*******************************999*******************************************************************************************************999877*************************************************877788***************************9766544699***********99999************************9 PP

>> TIGR00563  rsmB: ribosomal RNA small subunit methyltransferase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   0.0   1.5e-61   1.2e-58     148     435 ..     230     534 ..     184     536 .. 0.84

  Alignments for each domain:
  == domain 1    score: 197.1 bits;  conditional E-value: 1.5e-61
    TIGR00563 148 lvklkkaaygkaeaesiveannqkPkltLRvnslkasreelldllaeeGvegeksdaedavkl...ekpiavtklpgfeeGwvtvqDasaqlvatlLePkneetilDvCaaPGGktthilelakdqaqvvalDleehrlkrvkenleRLgltiikveekdadkagekeevekfDRiLlDaPCsalGvirRkPDlkwlrkeadiaeLvelqkeiLka....iaplvkkgGtLvYstCtllpeeneeqikaF.........laeledl..p.lekrlpekvsesvssgglqilPhaeegDGFfiaklkk 435
                  lv+ +  ++   e+ + +++  +  ++ +R n+lk+ r++l+  l ++Gv+ ++ +    v l   e p++v++ p +  G + +q a+++  + +L P+++e +lD+ aaPGGkt++i+ l+++ + v a Dl   r k    n++RLg++ ++    d++k  + ++  kfDRiLlDaPCs+lGvi R+P +k +r+ ad+ + ++lqke+L a    +  + k+gG++vYstC++  +enee+++           + e  d+  p + +   ++ ++sv + + ++ Ph ++ DGF++ak++k
  MMETSP1061-20121228|37815_1 230 LVEYFLTMFSPSECLEFIDYSDKVRPMVIRTNTLKTRRKDLALALMKRGVSLDPLASWSKVGLkimESPVPVGATPEYLSGHYMLQSAASMCPVLALSPQPKERVLDMSAAPGGKTSYIAQLMRNTGVVFANDLRADRQKATVANMHRLGVRNVITCMHDGRKLAKLFQQFKFDRILLDAPCSGLGVISRDPSVKVQRTIADVKKTAHLQKELLLAaidvLNHKSKTGGVMVYSTCSISVAENEEVVNYAlekrdikiiDTE-LDFgtPaFTRYQQKRFHPSV-AKTRRFYPHVHNMDGFYVAKIRK 534
                  6776777777778889999999999***************************9998555554411278************************************************************************************9888889999999999989*****************************************98652222456789********************9876565544432222.23322335333333444444.677899***************99 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0   2.2e-09   1.8e-06      58     154 ..     306     409 ..     264     415 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 2.2e-09
    TIGR00080  58 qtisaphm...vakmlelLelkag..akvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkLeldnvivkegDGrkG..feekaPydailvta 154
                  +++s  +m    a m+  L l+++  ++vL++ +  G ++  +a+l+++ g+v++ +   + ++ +  ++++L+  nvi+ + DGrk     ++  +d+il+ a
  MMETSP1061-20121228|37815_1 306 EYLSGHYMlqsAASMCPVLALSPQpkERVLDMSAAPGGKTSYIAQLMRNTGVVFANDLRADRQKATVANMHRLGVRNVITCMHDGRKLakLFQQFKFDRILLDA 409
                  567777773335899****997652289***************************999999999999******************9851233566788888877 PP

>> TIGR00438  rrmJ: ribosomal RNA large subunit methyltransferase J
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   0.0   4.8e-07   0.00039      34     136 ..     332     443 ..     328     454 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.8 bits;  conditional E-value: 4.8e-07
    TIGR00438  34 klvldlGaaPGGWsqvavekvgekGlviavdlqpvk...pienvdf..irGdftdeevlekilervgddkvdvvisdaaPn....lsGirdidhlrsidlvelaldiakevl 136
                  ++vld+ aaPGG + ++++ + + G+v a dl+       + n++   +r  +t  +   k+ +   + k d ++ da  +    +s  +++ + r+i  v+++ ++ ke+l
  MMETSP1061-20121228|37815_1 332 ERVLDMSAAPGGKTSYIAQLMRNTGVVFANDLRADRqkaTVANMHRlgVRNVITCMHDGRKLAKLFQQFKFDRILLDAPCSglgvISRDPSVKVQRTIADVKKTAHLQKELL 443
                  78******************************86553344555554225777888888888888888889999999986543333666777888888888887777777766 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.5e-06     0.002      14      93 ..     325     406 ..     318     413 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.5e-06
    TIGR02469  14 kLrlkkgdvllDiGaGtGsvtieaarlvpk.grvyaierneealelieeNlrrfgvsnieivegdapkaeeds.leeadavf 93 
                  +L +++++++lD  a  G  t  +a+l+++ g v+a + ++++ + + +N++r+gv+n+ + + d  k ++   + ++d+++
  MMETSP1061-20121228|37815_1 325 ALSPQPKERVLDMSAAPGGKTSYIAQLMRNtGVVFANDLRADRQKATVANMHRLGVRNVITCMHDGRKLAKLFqQFKFDRIL 406
                  6899**************************9****************************99998877544433456777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.39u 0.14s 00:00:00.53 Elapsed: 00:00:00.34
# Mc/sec: 2441.80
//
Query:       MMETSP1061-20121228|37817_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.19s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1675.25
//
Query:       MMETSP1061-20121228|37818_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.7e-09   32.7   0.0    3.2e-08   30.6   0.0    1.8  1  TIGR00877 purD: phosphoribosylamine--glycine ligase
    0.00016   17.3   0.0    0.00025   16.6   0.0    1.2  1  TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
     0.0017   15.6   0.0     0.0034   14.6   0.0    1.4  1  TIGR00768 rimK_fam: alpha-L-glutamate ligases, RimK family
     0.0041   13.5   0.0     0.0058   13.0   0.0    1.1  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
     0.0056   14.7   0.0      0.011   13.7   0.0    1.5  1  TIGR02988 YaaA_near_RecF: S4 domain protein YaaA
     0.0092   11.8   0.0      0.015   11.1   0.0    1.2  1  TIGR02068 cya_phycin_syn: cyanophycin synthetase
  ------ inclusion threshold ------
      0.014   12.3   0.0      0.023   11.6   0.0    1.3  1  TIGR02144 LysX_arch: lysine biosynthesis enzyme LysX


Domain annotation for each model (and alignments):
>> TIGR00877  purD: phosphoribosylamine--glycine ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   5.5e-11   3.2e-08     103     291 ..     148     325 ..      82     337 .. 0.72

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 5.5e-11
    TIGR00877 103 asKafakdllkkagiptaeyevftepeeakeyieekgapaivvkadgLaaGKgvivvkdeeealkaveeilekkkf.geagekvviEefleGeEvsllalv.dgktvvplplaqdhkrvlegDkgpnTGGmGayspapvvteevekkiaeeiveptvealkkegtpykGvLyaglmltkegepkvlefnvR 291
                   +K+  ++ll++ag++  + +  + +e+++++++  + p +v k+   a+  gv+++ + +ea+++ + +++++ + g+   +v+  efl+G+E  +  +  +g + ++++ + d kr  +g   +       + + p+  ++ e k+    v++t++ l  +    +G  ++++++t+ g p ++e+n+R
  MMETSP1061-20121228|37818_1 148 RDKKIQQELLRAAGMRAVRQAGSDRFEDVEDFLRTESYP-VVLKPTESAGSDGVKLCPNFKEAKEHFHLLMNSQLVnGGDCGQVLCQEFLRGKEYVVDHVSlNGVHKTMMVWVYD-KRERNGSAFVY------FGCVPIEADSEEAKLIIPYVRKTLDVLGVK----NGPSHGEVIITESG-PCLVEMNCR 325
                  4799999*******************************9.*********************************8775333459***********998666515555555555544.44433333332......335555555555555555555555555555....44445566666666.777777776 PP

>> TIGR01369  CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   4.2e-07   0.00025     616     841 ..      93     326 ..      90     328 .. 0.79

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 4.2e-07
    TIGR01369 616 ltvedvldiiekekvegvivqlgGqtalnlakeleeag.vkilGtsaesidraEdRek..FsklldelgikqpkgkeatsveeakeiakeigyPvlvRpsyvlgGrameiveneeeleryle....eav.evskekPvlidkyledavEvdvDavadgeevliagileHiEeaGvHsGDstlvlppqklseevk..kkikeivkkiakelkvk.GllniqfvvkdeevyviEvnvRa 841
                  lt+e++    ++ ++e v    gG  + ++a+ l+ea  +   Gt   + ++++ R+k   ++ll+  g+   +++     e+++++ ++  yPv+++p    g  +++++ n +e ++ ++    +++ +      vl +++l  ++E+ vD v+ ++  +  +++  + +     G +++ ++   ++++ +  k i  +v+k    l vk G+    +++++    ++E+n Ra
  MMETSP1061-20121228|37818_1  93 LTLEEIQRHSTEANFEIVACLAGGEAGVDVADILSEAMgLLSNGTLRVNGEMLNRRDKkiQQELLRAAGMRAVRQAGSDRFEDVEDFLRTESYPVVLKPTESAGSDGVKLCPNFKEAKEHFHllmnSQLvNGGDCGQVLCQEFLR-GKEYVVDHVSLNG--VHKTMMVWVYDKRERNGSAFVYFGCVPIEADSEeaKLIIPYVRKTLDVLGVKnGPSHGEVIITESGPCLVEMNCRA 326
                  678888888899999*******************88652666799888888887776632589***********************************************998877777665322132202233345*******9.**********987..5677888888888889999999988888776541145666666666666664467778899999999999999998 PP

>> TIGR00768  rimK_fam: alpha-L-glutamate ligases, RimK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   5.8e-06    0.0034      81     173 ..     143     239 ..      76     249 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 5.8e-06
    TIGR00768  81 aienagdKllssalLakaglplpktlvagseeeakklieeigfPvvlKpvfGswGklvvlvedkqeaek...llealeqlke.kykvflvQeyikks 173
                   ++n +dK +   lL +ag+   +++ +   e++++++   ++PvvlKp++    ++v l+ + +ea++   ll+  + +++ +   +l Qe+   +
  MMETSP1061-20121228|37818_1 143 EMLNRRDKKIQQELLRAAGMRAVRQAGSDRFEDVEDFLRTESYPVVLKPTESAGSDGVKLCPNFKEAKEhfhLLMNSQLVNGgDCGQVLCQEFLRGK 239
                  578999********************************************988888888887766666511156666777778999******98755 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0     1e-05    0.0058     294     348 ..     146     201 ..     132     242 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1e-05
    TIGR03103 294 lcddkrltrrlvkeaGlqvPeqaeatkaeaveaflaehG.avvvkPvrgeqGkGis 348
                     dk++ + l+++aG++  +qa  ++ e+ve+fl++    vv+kP+++    G+ 
  MMETSP1061-20121228|37818_1 146 NRRDKKIQQELLRAAGMRAVRQAGSDRFEDVEDFLRTESyPVVLKPTESAGSDGVK 201
                  5579*******************************876527999***998877775 PP

>> TIGR02988  YaaA_near_RecF: S4 domain protein YaaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0     2e-05     0.011      27      52 ..     129     154 ..     120     157 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 2e-05
    TIGR02988  27 aKwflqeneVlvNgelenrRgkKlrk 52 
                  a   l++++  vNge  nrR kK+++
  MMETSP1061-20121228|37818_1 129 AMGLLSNGTLRVNGEMLNRRDKKIQQ 154
                  556799******************87 PP

>> TIGR02068  cya_phycin_syn: cyanophycin synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   2.6e-05     0.015     212     300 ..     148     242 ..     133     251 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 2.6e-05
    TIGR02068 212 sDkeltkklLkaaGvPvPeGtvvqsaeeaeeaaeelGyPvvikPldGnhGrGvtiniesreeiesayeaakees.......seviverfikGrdhr 300
                  +Dk++ ++lL+aaG+   +    + +e++e+      yPvv+kP +     Gv++   + +e+++ +++  +          +v+ + f++G+++ 
  MMETSP1061-20121228|37818_1 148 RDKKIQQELLRAAGMRAVRQAGSDRFEDVEDFLRTESYPVVLKPTESAGSDGVKLC-PNFKEAKEHFHLLMNSQlvnggdcGQVLCQEFLRGKEYV 242
                  7********************************************98888888873.445555555554433322223344577777777777775 PP

>> TIGR02144  LysX_arch: lysine biosynthesis enzyme LysX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   3.9e-05     0.023      72     173 ..     136     238 ..      73     247 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 3.9e-05
    TIGR02144  72 GvkvinsseviiacgdKvfttlkLakagvPtPktivafdkeaalklaeelGyPvvlKPve..GsWG.rlvskvkdkdeaeallehkevlkgsqlklylvqEyink 173
                  G  ++  +  +++  dK + +  L +ag+   +++ +   e++    +   yPvvlKP+e  Gs G +l    k+++e   ll   ++++g +    l qE++  
  MMETSP1061-20121228|37818_1 136 G--TLRVNGEMLNRRDKKIQQELLRAAGMRAVRQAGSDRFEDVEDFLRTESYPVVLKPTEsaGSDGvKLCPNFKEAKEHFHLLMNSQLVNGGDCGQVLCQEFLRG 238
                  3..3333345677889999999999999999999999999999999************955599997899999**999999*********************875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.32u 0.20s 00:00:00.52 Elapsed: 00:00:00.30
# Mc/sec: 2542.99
//
Query:       MMETSP1061-20121228|37819_1  [L=332]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-19   66.6   0.0      3e-19   66.2   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    9.2e-07   26.3   0.0    1.4e-06   25.7   0.0    1.2  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.5e-22     3e-19       5     234 ..      94     310 ..      90     314 .. 0.90

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 1.5e-22
    TIGR03903   5 kvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGkrvvqGasvaevlykqLsPvdvslPsaia.ghpLgevLRkalnkdvrqRa 234
                   vaik+l + +  ++      rRei++  +L+h ni ++      +  +++ + ey +G  l ++L + G  +  + ++ +     al   h + v+hRD+kP+n++v a ++    k+ DFG +   p  +          + + G+  Y  Pe + g       D+++ G+++ e L G +  + +      y+++s vd+ +P   + +    +++Rk l k+++qR 
  MMETSP1061-20121228|37819_1  94 IVAIKVLHKSQLLKAGVEHQLRREIEIQSHLRHQNILRMYGYFY-DSKRIYLILEYSPGGELYKRLTQRGHFSERTSANYISDLSTALDFCHTKHVIHRDIKPENLLVGAHGE---IKIADFGWSVHAPTSRR---------NTLCGTLDYLPPEMVEGRDHDKFVDVWSLGVLLYEFLYGGPPFEAEGH-SATYRRISRVDLRFPAKPEvSEDAKDLIRKFLVKEPQQRI 310
                  59********999999**********************986654.4459***********************************************************98886...6889****988887655.........5678************************************99987765.5689***********99873556779************95 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.7   0.0     7e-10   1.4e-06      43     138 ..     113     216 ..      97     225 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.7 bits;  conditional E-value: 7e-10
    TIGR03724  43 RtrkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv.kddklyliDfGLgkk 138
                    r+E+ + s+++++ +   + y++d ++  +++ey  g +l + l+++ +       ++++++ +++  +H + ++h D+ ++N++v  ++++ + DfG + +
  MMETSP1061-20121228|37819_1 113 QLRREIEIQSHLRHQNILRMYGYFYDSKRIYLILEYSPGGELYKRLTQRGHfsertsaNYISDLSTALDFCHTKHVIHRDIKPENLLVgAHGEIKIADFGWSVH 216
                  578999999******************************9999999887778899999******************************5588999*****8865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (332 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.31
# Mc/sec: 1413.56
//
Query:       MMETSP1061-20121228|37820_1  [L=224]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (224 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 1182.62
//
Query:       MMETSP1061-20121228|37843_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.19s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 1421.88
//
Query:       MMETSP1061-20121228|37853_1  [L=323]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (323 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1705.30
//
Query:       MMETSP1061-20121228|37875_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 437.96
//
Query:       MMETSP1061-20121228|37877_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|37872_1  [L=397]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.6e-21   72.4   0.0    1.1e-14   52.3   0.0    2.1  2  TIGR01297 CDF: cation diffusion facilitator family transporter


Domain annotation for each model (and alignments):
>> TIGR01297  CDF: cation diffusion facilitator family transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.0   0.1   7.1e-08   0.00029       2      61 ..      30      89 ..      29      92 .. 0.91
   2 !   52.3   0.0   2.6e-18   1.1e-14      69     192 ..     120     358 ..     118     394 .. 0.92

  Alignments for each domain:
  == domain 1    score: 18.0 bits;  conditional E-value: 7.1e-08
    TIGR01297  2 erallialllnlllmvveivggllagSlAllaDaaHslsDvaaliiallalrisrkpade 61
                 ++ l ia+l    ++++++ + ++ gS A+l D++ +++D +a +++++a r  +  a++
  MMETSP1061-20121228|37872_1 30 KKLLCIAFLSFQSFAILQLGAAIWGGSEAMLGDSIAMMIDSLAYLFNMVAERKKEVYATK 89
                 6788899999999*************************************9988877765 PP

  == domain 2    score: 52.3 bits;  conditional E-value: 2.6e-18
    TIGR01297  69 raeiLaallnalflvvvalfilyeAierlin........peeeiegslmlivaivglivnlilalllkraGkkes.........................................................................................................slalraaalhvlsDllsSvgvligvlliyfg...gwkiaDpiaslvisvlilktafrllk 192
                   +e +  l+++ +l+v+++++l +A+ +li         ++  ++++lm++ +++ l++  + + ++++a ++ +                                                                                                         +l++ +a+ hv +D++ S++v+i+ ll++++      iaD+ a++v+s+li+ + f l+ 
  MMETSP1061-20121228|37872_1 120 QLELIPPLVSVTTLLVLTIIVLKKAVYSLILdfqgdehlGP-DPDVNLMALFSVINLVLDAVNVGYFASANHALGyktnrerqdndtdagtnalikpsddsetdnehsdnfdvvnvdnmdrlendrpcscpkttsdtgsspldescacpstpfstespsygsndsfddhfldhkvdddgtNLNMCSAYTHVFADTIRSLCVVIASLLAKYTeavTPEIADASAAVVVSILIFLSIFPLIG 358
                  5788999***********************99**9999755.799**************99999999999555556666************************************************************************************************************************************766668*****************999985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (397 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1940.73
//
Query:       MMETSP1061-20121228|37879_1  [L=1028]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1028 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.15s 00:00:00.61 Elapsed: 00:00:00.37
# Mc/sec: 3667.16
//
Query:       MMETSP1061-20121228|37891_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|37900_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 437.96
//
Query:       MMETSP1061-20121228|37901_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 375.66
//
Query:       MMETSP1061-20121228|37903_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0094   13.9   0.1      0.025   12.5   0.1    1.7  1  TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family


Domain annotation for each model (and alignments):
>> TIGR02605  CxxC_CxxC_SSSS: putative regulatory protein, FmdB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.5   0.1   6.2e-06     0.025       7      32 ..     135     161 ..     135     165 .. 0.96

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 6.2e-06
    TIGR02605   7 rCtaCghefevlqkmsd.dplasCPeC 32 
                  rC  C  +fe   +++  + l++CP+C
  MMETSP1061-20121228|37903_1 135 RCWGCSDDFETYLRVNIlATLVECPKC 161
                  799************************ PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 886.97
//
Query:       MMETSP1061-20121228|37907_1  [L=292]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (292 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1751.86
//
Query:       MMETSP1061-20121228|37920_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1391.89
//
Query:       MMETSP1061-20121228|37949_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|37960_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|37958_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1984.72
//
Query:       MMETSP1061-20121228|37962_1  [L=187]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-25   85.7   0.2    9.6e-25   85.4   0.2    1.1  1  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    1.3e-06   25.7   0.0    1.6e-06   25.4   0.0    1.2  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    0.00016   18.2  20.4     0.0009   15.7  14.2    1.8  1  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
     0.0021   14.7  12.7     0.0027   14.4   8.8    1.2  1  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
      0.004   15.5  12.1      0.016   13.5   0.1    2.2  2  TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
  ------ inclusion threshold ------
      0.012   12.8   0.2      0.016   12.3   0.2    1.1  1  TIGR02660 nifV_homocitr: homocitrate synthase
      0.016   12.0   0.0      0.026   11.3   0.0    1.4  1  TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit
      0.021   11.8   5.5      0.027   11.5   3.8    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23
      0.026   10.0   0.1      0.034    9.6   0.1    1.0  1  TIGR02712 urea_carbox: urea carboxylase


Domain annotation for each model (and alignments):
>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.4   0.2   2.1e-27   9.6e-25      11     152 ..       1     144 [.       1     156 [. 0.86

  Alignments for each domain:
  == domain 1    score: 85.4 bits;  conditional E-value: 2.1e-27
    TIGR01349  11 meeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegt.kdvpvnkliavlveekedvedavknyklessasapkpkekaeqsaeesaesakse..asaekakessseaeaskkeskdrifasPlAkklAk 152
                  me+G l++w + eG   ++G+ +a +etDkA +d+e+q++g++akil+++g+  d++v+ +i v+vee++d++ a++n+ le++ + p +++ a++ a++ +++ + e  a+   a+  + ++++   +  + ++a P   ++A 
  MMETSP1061-20121228|37962_1   1 METGVLSEWYVEEGSGFSAGQSLAKVETDKASIDFEAQDDGFVAKILMEAGSgDDIEVGVPIMVTVEEEDDIA-AFANFVLEETEAPPAAAAAAPEPAPAPEPAPVVEavAPPAAAPVAPPPVPVEPVAVAEEVVAAPDMETMAA 144
                  99************************************************98468******************.**********9988888888888877777555550055555666677788888888889999998877775 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.4   0.0   3.6e-09   1.6e-06      15     113 ..       4     105 ..       1     148 [. 0.69

  Alignments for each domain:
  == domain 1    score: 25.4 bits;  conditional E-value: 3.6e-09
    TIGR01347  15 atvaewekkvGdavkkdeliveletDkvslevaseadGvleelleke..gdtvesgevla.eleessaaaeaasekskeekeekaaakaekakeaaekkkal 113
                  + + ew  + G   + ++ ++++etDk s++ +++ dG ++++l++   gd +e+g  +  ++ee+++ a+ a+   +e++++ aaa+a+++++ a++ +++
  MMETSP1061-20121228|37962_1   4 GVLSEWYVEEGSGFSAGQSLAKVETDKASIDFEAQDDGFVAKILMEAgsGDDIEVGVPIMvTVEEEDDIAAFANFVLEETEAPPAAAAAAPEPAPAPEPAPV 105
                  66789999**********************************998752268999998776156665555555555555555555555555444444433322 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7  14.2     2e-06    0.0009     173     293 ..       8     142 ..       1     153 [. 0.55

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 2e-06
    TIGR01348 173 evlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkv..GdkvktGdlilvleveg..............aapaaaeapakaeaaaaapaaeaeeaaaapaaakaeakapvdantendakvdhaaPavrrl 293
                  e  v+ G   sa+qsl ++e+dkas++  a+  G v ++ ++   Gd++++G  i+v   e+               ap+aa+a a+++a+a+ pa   e+ a ++aa+ a +++pv+  ++ ++ v  aaP +  +
  MMETSP1061-20121228|37962_1   8 EWYVEEGSGFSAGQSLAKVETDKASIDFEAQDDGFVAKILMEAgsGDDIEVGVPIMVTVEEEddiaafanfvleetEAPPAAAAAAPEPAPAPEPAPVVEAVAPPAAAPVAPPPVPVEPVAVAEEVV--AAPDMETM 142
                  5567888899999999999999999999999999999988875336999999877754332211111100000000122222222222222222222222222333334455556666666555555..66665555 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   8.8   5.9e-06    0.0027      17     115 ..       4     116 ..       1     153 [. 0.70

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 5.9e-06
    TIGR02927  17 GtvtrwlkavGdtvevdepllevstdkvdteipspaaGvlleikae..eddtvevGgvlaiiGeegea............gsedaeapaepeeepaeeppkeepkkaaeapae 115
                  G +++w  ++G    + + l +v tdk   +  +   G + +i +e    d +evG  + +  ee ++             + +a+a+a+pe++pa+ep     + a+ a a+
  MMETSP1061-20121228|37962_1   4 GVLSEWYVEEGSGFSAGQSLAKVETDKASIDFEAQDDGFVAKILMEagSGDDIEVGVPIMVTVEEEDDiaafanfvleetEAPPAAAAAAPEPAPAPEPAPVVEAVAPPAAAP 116
                  8899************************999999999*999997652267899***999988887777677877755544333444444444444444433333333322222 PP

>> TIGR00531  BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.1   3.5e-05     0.016     100     153 ..       9      64 ..       6      68 .. 0.89
   2 ?    3.9   5.7     0.032        14      35      96 ..      85     148 ..      71     166 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3.5e-05
    TIGR00531 100 pfvevGdkvkkgdvvciveAmklmneieaevagkvveilve..dgqpveygepLiv 153
                   +ve G+  + g+ ++ ve  k   + ea+  g v +il+e  +g+ +e g p++v
  MMETSP1061-20121228|37962_1   9 WYVEEGSGFSAGQSLAKVETDKASIDFEAQDDGFVAKILMEagSGDDIEVGVPIMV 64 
                  69*************************************98335678999998876 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.032
    TIGR00531  35 eaaaakksvlqqaaapvvaqvp..avasaavpaaavaaeaakadkkehlvlsPmvGtFYrapsP 96 
                  + +aa+ ++ ++a ap +a+v+   +++aa+p+a +  ++ ++   e++v +P + t  +a +P
  MMETSP1061-20121228|37962_1  85 APPAAAAAAPEPAPAPEPAPVVeaVAPPAAAPVAPPPVPVEPVAVAEEVVAAPDMETMAAAVAP 148
                  4567788888999999999998834568999999999999999999*******99999888887 PP

>> TIGR02660  nifV_homocitr: homocitrate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.2   3.5e-05     0.016      16      63 ..      31      80 ..      27      86 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.5e-05
    TIGR02660 16 agvaFsaeEKlaiAkaLdeaGv.delEvGipam.geeEraairaiaalgl 63
                 a++ F+a++   +Ak+L eaG  d++EvG+p m   eE ++i+a a+ +l
  MMETSP1061-20121228|37962_1 31 ASIDFEAQDDGFVAKILMEAGSgDDIEVGVPIMvTVEEEDDIAAFANFVL 80
                 678899999999*********7589******9934688889999887665 PP

>> TIGR01730  RND_mfp: efflux transporter, RND family, MFP subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.8e-05     0.026      33      68 ..       2      37 ..       1      50 [. 0.88

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.8e-05
    TIGR01730 33 vaGkvtkisvkeGqkVkkGqlLakldddelqlalda 68
                 ++G++ + +v+eG+  ++Gq Lak+++d++++  +a
  MMETSP1061-20121228|37962_1  2 ETGVLSEWYVEEGSGFSAGQSLAKVETDKASIDFEA 37
                 57***************************9987544 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   3.8   5.9e-05     0.027      81     137 ..      71     135 ..      22     156 .. 0.58

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 5.9e-05
    TIGR00601  81 k.........akaaePaatpesaptptpsatpasvaekksaaPasaveeessaeeeatatalesed 137
                             ++++P+a++++ap+p+p a+++++  +++a+Pa+a     +++ e+ a a+e  +
  MMETSP1061-20121228|37962_1  71 DiaafanfvlEETEAPPAAAAAAPEPAP-APEPAPVVEAVAPPAAAPVAPPPVPVEPVAVAEEVVA 135
                  1555555555567778888888888887.6666676777777766654444444444444433322 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.1   7.4e-05     0.034    1143    1197 ..       6      62 ..       2      66 .. 0.83

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 7.4e-05
    TIGR02712 1143 lWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvke..GdaveaGdal 1197
                   l +  ve+g+  +ag++l  ve+ k+ +  +a  +G v+kil+++  Gd +e G  +
  MMETSP1061-20121228|37962_1    6 LSEWYVEEGSGFSAGQSLAKVETDKASIDFEAQDDGFVAKILMEAgsGDDIEVGVPI 62  
                   5567899**********************************9986115677777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (187 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1028.42
//
Query:       MMETSP1061-20121228|37976_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 2351.81
//
Query:       MMETSP1061-20121228|37999_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1734.71
//
Query:       MMETSP1061-20121228|38016_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.27
# Mc/sec: 2429.58
//
Query:       MMETSP1061-20121228|38033_1  [L=297]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-10   38.1   0.4    2.6e-10   38.1   0.3    2.2  2  TIGR00980 3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
    2.5e-07   28.2   0.4    5.1e-07   27.2   0.2    1.6  1  TIGR00983 3a0801s02tim23: mitochondrial import inner membrane translocase subunit


Domain annotation for each model (and alignments):
>> TIGR00980  3a0801so1tim17: mitochondrial import inner membrane translocase subunit tim17
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.1   0.5      0.03        61      13      34 ..     158     179 ..     152     189 .. 0.84
   2 !   38.1   0.3   1.3e-13   2.6e-10      40     114 ..     205     279 ..     195     294 .. 0.87

  Alignments for each domain:
  == domain 1    score: 1.1 bits;  conditional E-value: 0.03
    TIGR00980  13 ilddiGgafamGtiGGaifqai 34 
                  ++d +Gg  a+G+ GG+++  +
  MMETSP1061-20121228|38033_1 158 MMDSCGGKAAIGVFGGGVMGLL 179
                  6799************997655 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 1.3e-13
    TIGR00980  40 spkGeklvgalaaiktrapvlGgnfavwGGlfstidcalvavrkkedPwnsivsGaltGallavrsGpkamagsa 114
                  +p  e+ + +++a   ++     +fa   G+f   +c + + r+k d wn +vsG +tGa+l + +Gp+a a ++
  MMETSP1061-20121228|38033_1 205 APFKEQVRYTMRATAEKSMYWCRSFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAHAGPQAAAVGC 279
                  5666788889999999****************************************************9976554 PP

>> TIGR00983  3a0801s02tim23: mitochondrial import inner membrane translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.2   2.5e-10   5.1e-07      67     139 ..     207     279 ..     156     288 .. 0.81

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 2.5e-10
    TIGR00983  67 tklrlnriLnsvtrrGallgnslGilaLvYnainslieaargkedvansvaAGaltGalykstrGlraiavss 139
                   k ++   +   + +  ++  s   ++ v+ + + l+e+ rgk+d++n v+ G +tGa  ++  G +a+av+ 
  MMETSP1061-20121228|38033_1 207 FKEQVRYTMRATAEKSMYWCRSFAFITGVFGGSECLVEKFRGKHDMWNPVVSGCITGAALQAHAGPQAAAVGC 279
                  466666777778888999999999*******************************************999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (297 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1568.03
//
Query:       MMETSP1061-20121228|38046_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1103.43
//
Query:       MMETSP1061-20121228|38081_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0043   14.2   0.0     0.0044   14.1   0.0    1.1  1  TIGR00661 MJ1255: conserved hypothetical protein


Domain annotation for each model (and alignments):
>> TIGR00661  MJ1255: conserved hypothetical protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   1.1e-06    0.0044     163     207 ..      51      95 ..      30      97 .] 0.85

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.1e-06
    TIGR00661 163 ilpkiikamegPllredvddldnygedyilvylt.fesrrkilElL 207
                    p  ik m+ Pl ++++dd+dn++ + + + ++  e  + i E L
  MMETSP1061-20121228|38081_1  51 QRPAWIKDMP-PLTQQQIDDMDNFYRNRLRSLQAvDEALESITETL 95 
                  456889****.*****************999999566667788877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 581.95
//
Query:       MMETSP1061-20121228|38068_1  [L=643]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-51  172.7   8.3    5.1e-51  171.6   5.8    1.4  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.6   5.8   1.2e-54   5.1e-51      25     388 ..     110     539 ..     107     546 .. 0.94

  Alignments for each domain:
  == domain 1    score: 171.6 bits;  conditional E-value: 1.2e-54
    TIGR00797  25 pveLaavglg.slvlmvliiillglltattalvaqavGagnqq........................................rlsrsasqslllalllgllvavvlifaakpllslmgadeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilifkfglGivGaAlAtvisqylmflllllyilk..................akkvdlknegllkp.dwealkrllklglplllrvilvsflvtllallvarlG...stalAahqvalqvesllfmlafGlaiAvsalvGqalGagdpkrakevarvalklglllglvlaiililfref.iarlft...kdpevlelaaillifvaltqpsdalafvldGvlrGagdtkvaaivtvvsawviglpllfllglvt 388
                   veLaa++l+ +l +++  ++ +g + a+++l +qa G+   +                                           + + ++l++ ++l +++ + +++ ++ +l  +g ++e+ae a++Yl+il++++  + +  +++ +++++g + +p  ++++g+v++++++ ++ + +glG  G+A Atv  q++m++ ++ y+++                   +++ l+ne+++   + + +++ l+l +p +++ i++++++ ++  l  rl    +++l+a+++  ++ s++fm +  ++iA++a+vG+ lGag+   a+ +  v +  + ++++ l+++l+ ++++ +++lf    ++++++e +a   +f+a++ + d++++ l+G+  G+g++kv+  ++++++w+ig+pl++++gl+ 
  MMETSP1061-20121228|38068_1 110 GVELAAAALAtTLCNVTGLSMCVGFSFALSTLSGQAKGEMLSRtsrakaaatnadelesqpqfftendkndsydndveastpnTTVVFLLRGLIIQIMLVIPIGMWWLQGIDSFLVRLGQTPELAEHASTYLKILVPSLWVYSIQWTITAWCNSIGMADVPARASTLGVVLHVPFNMLFCYGLGLGYLGCAFATVCFQMVMCVYIVSYLVFnpsgrdrvltqtggravgRRSLTLRNELKIAVgSLRGFCDYLALAIPGIIA-ISEWWASEVAIFLSGRLApnpQVTLSAMTIYQSINSFCFMCPSAFSIAGTARVGNLLGAGNHFGASIAGNVSVLSTAVFSGALGLLLYTMPHTfLPSLFVsedEHRAIVEQTAATIPFLAVYVFADGVQTGLNGIIKGCGRQKVMVPIVLFAYWTIGVPLAYYFGLHR 539
                  589*******99***************************988899************************************998889999**********************99999999******************************************************************************************99************999998888888877654427899**********9997.79999999********9988889*********************************************************************84679999555666788888899*************************************************9665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (643 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.32
# Mc/sec: 2652.16
//
Query:       MMETSP1061-20121228|38073_1  [L=630]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (630 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2771.77
//
Query:       MMETSP1061-20121228|38088_1  [L=810]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.28
# Mc/sec: 3818.26
//
Query:       MMETSP1061-20121228|38077_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.23
# Mc/sec: 2834.90
//
Query:       MMETSP1061-20121228|38135_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|38144_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 437.65
//
Query:       MMETSP1061-20121228|38152_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 383.40
//
Query:       MMETSP1061-20121228|38156_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|38177_1  [L=197]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (197 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1238.18
//
Query:       MMETSP1061-20121228|38190_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 479.33
//
Query:       MMETSP1061-20121228|38209_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|38252_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.3   1.2       0.03   11.3   0.8    1.1  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.8   7.3e-06      0.03      46      73 ..      20      47 ..       2      61 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 7.3e-06
    TIGR03921 46 eddcdghGTlvAglIAarpaegsGfvGv 73
                  +d +ghGT   g I+a  +++ G+vG+
  MMETSP1061-20121228|38252_1 20 YNDGNGHGTHCSGTIGAVGNNAIGVVGI 47
                 46999**********************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 435.56
//
Query:       MMETSP1061-20121228|38260_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|38257_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.74u 0.17s 00:00:00.91 Elapsed: 00:00:00.51
# Mc/sec: 1498.46
//
Query:       MMETSP1061-20121228|38256_1  [L=349]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (349 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.30
# Mc/sec: 1535.47
//
Query:       MMETSP1061-20121228|38278_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|38287_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       208  (0.050707); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1346.29
//
Query:       MMETSP1061-20121228|38300_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.34
# Mc/sec: 345.50
//
Query:       MMETSP1061-20121228|38306_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.37
# Mc/sec: 214.04
//
Query:       MMETSP1061-20121228|38309_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-24   81.5   0.1    7.9e-24   81.4   0.0    1.0  1  TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit
    1.4e-15   53.9   0.0    1.5e-15   53.7   0.0    1.0  1  TIGR02025 BchH: magnesium chelatase, H subunit


Domain annotation for each model (and alignments):
>> TIGR02257  cobalto_cobN: cobaltochelatase, CobN subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   3.8e-27   7.9e-24    1149    1220 ..       2      73 ..       1      76 [] 0.97

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 3.8e-27
    TIGR02257 1149 ylfaydatteavsdwlyeaiadaylldeevkeFlieknPaalrdlaeRlleaanRelWqeakeeileelkkl 1220
                   ylf++dat+++vsd++ye++a++y lde++++F  e+nP+alr ++eRlleaa+R++Wq+ ++ei e+l++ 
  MMETSP1061-20121228|38309_1    2 YLFGFDATADVVSDFMYEQVAQSYALDESTQAFYEESNPWALRGVSERLLEAAQRGMWQNPNPEIIEALRET 73  
                   9******************************************************************99875 PP

>> TIGR02025  BchH: magnesium chelatase, H subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.7   0.0   7.2e-19   1.5e-15    1190    1259 ..       2      72 ..       1      75 [. 0.95

  Alignments for each domain:
  == domain 1    score: 53.7 bits;  conditional E-value: 7.2e-19
    TIGR02025 1190 ntlGWsataeavddWvYdqltetyilDeemrerlaelnpealrkivsrllEasgRglWe.adeeklekLqe 1259
                   +++G++ata+ v d++Y+q+++ y+lDe  +   +e np alr + +rllEa +Rg+W+ +++e +e+L+e
  MMETSP1061-20121228|38309_1    2 YLFGFDATADVVSDFMYEQVAQSYALDESTQAFYEESNPWALRGVSERLLEAAQRGMWQnPNPEIIEALRE 72  
                   689*******************************************************846899*****98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.56
# Mc/sec: 179.13
//
Query:       MMETSP1061-20121228|38316_1  [L=275]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.015   13.3   2.0      0.038   11.9   1.4    1.7  1  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   1.4   9.3e-06     0.038      56     114 ..     134     192 ..     124     203 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 9.3e-06
    TIGR00880  56 iarilqGfgaaaalvagaaliadiikee.ersvalgllsagialgpilGpllGavlaqal 114
                  i  ++ +f+ +++++a++  i + +++  +r+   g++s+g +++   Gpl+ ++l+++l
  MMETSP1061-20121228|38316_1 134 IIAVMKSFS-SVVFSAVNMAINRTVDTIdQRGSLNGIASLGGSFAKACGPLFAGFLFSFL 192
                  333455554.5555566666666665555***************************9774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (275 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|38315_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.033   11.3   0.0      0.052   10.6   0.0    1.2  1  TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase


Domain annotation for each model (and alignments):
>> TIGR01422  phosphonatase: phosphonoacetaldehyde hydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   1.3e-05     0.052      32     118 ..     219     306 ..     212     312 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.3e-05
    TIGR01422  32 kgvqisleeaRkpmGleKidHirallklpevaerwqakfgralteadve..elyeafepllleklaeyaelipgvlevvaklrargiki 118
                  + +++   e   p G+  ++ i++l +  ++++++++++gr   e+d +  +l +++  l + ++++ya+ i  v ++v++l+ rgik+
  MMETSP1061-20121228|38315_1 219 NSISVGEMEYPFPSGMYPTKLIQRLSAAIDITSSYEENQGRHQREQDRKllRLLSDVSILGCGSVQRYAKEISEVFAMVDALE-RGIKL 306
                  566677777777899999*************************99996533789999999*********************96.67775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.10s 00:00:00.37 Elapsed: 00:00:00.31
# Mc/sec: 2103.31
//
Query:       MMETSP1061-20121228|38329_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 579.60
//
Query:       MMETSP1061-20121228|38331_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.17
# Mc/sec: 512.43
//
Query:       MMETSP1061-20121228|38341_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 611.95
//
Query:       MMETSP1061-20121228|38354_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.26
# Mc/sec: 832.55
//
Query:       MMETSP1061-20121228|38345_1  [L=444]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   9.7e-147  486.2   0.6   1.2e-146  485.9   0.4    1.1  1  TIGR02012 tigrfam_recA: protein RecA
    4.4e-14   50.7   0.1    9.1e-14   49.7   0.0    1.5  1  TIGR02237 recomb_radB: DNA repair and recombination protein RadB
    4.1e-10   37.3   0.0    2.6e-09   34.7   0.0    1.9  1  TIGR02236 recomb_radA: DNA repair and recombination protein RadA
    1.3e-07   29.3   0.0      2e-07   28.8   0.0    1.2  1  TIGR03881 KaiC_arch_4: KaiC domain protein, PAE1156 family
    2.7e-07   27.9   0.0    4.2e-07   27.2   0.0    1.2  1  TIGR02238 recomb_DMC1: meiotic recombinase Dmc1
    4.1e-07   27.2   0.3    1.7e-06   25.1   0.2    1.7  1  TIGR02239 recomb_RAD51: DNA repair protein RAD51
    1.8e-06   24.8   0.1    2.5e-06   24.3   0.1    1.2  1  TIGR00416 sms: DNA repair protein RadA
    3.8e-05   21.2   0.1    0.00011   19.6   0.0    1.8  1  TIGR03880 KaiC_arch_3: KaiC domain protein, AF_0351 family
    0.00012   18.9   0.1    0.00041   17.1   0.0    1.8  2  TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family
  ------ inclusion threshold ------
      0.013   12.8   0.0      0.029   11.7   0.0    1.6  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
      0.021   12.7   0.0      0.043   11.7   0.0    1.5  1  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
      0.035   10.9   1.0      0.089    9.6   0.0    1.9  2  TIGR03600 phage_DnaB: phage replicative helicase, DnaB family


Domain annotation for each model (and alignments):
>> TIGR02012  tigrfam_recA: protein RecA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  485.9   0.4  3.5e-149  1.2e-146       2     320 ..      83     398 ..      82     399 .. 0.98

  Alignments for each domain:
  == domain 1    score: 485.9 bits;  conditional E-value: 3.5e-149
    TIGR02012   2 kkkaleaalaqiekqfGkGsimklgekkveevevistGslaldlalGvGGlpkGriieiyGpessGkttlalhviaeaqkaggvaafidaehaldpvyakklgvdidellvsqpdtGeqaleivetlvrsgavdiivvdsvaalvpkaeieGemgdskvGlqarlmsqalrkltgalsksntvlifinqirekiGvmfGnpetttGGkalkfyasvrldirriesvkegeeavgnrvkvkvvknkvappfkeaefdilygeGisklgelidlaveldiikksGswysyedeklgqGrenvkellkenkelaeeiekkvr 320
                  k+ al+  l+qie+++G+Gs+++lg+++++ v++ stGsl+ld alG GG+pkGr++eiyGpessGkttlalh+iae+qk+gg+aaf+daehaldpvya++lg+d+d+llvsqpd+Ge al+iv++lvrs+avd+ivvdsvaalvp+ae+eG+m+ds++Glqarlms+a+rk+tg+l+ s++++if+nq+r+k+Gv++G+pe t+GG+alkfy+svrld rr e + e   + g rvkvkvvknkva+pfk + +dil+g Gi++ g+++d a +l+++++ Gswy+ye+++l+qGr+n+ e+lk n ++ e+ie+ vr
  MMETSP1061-20121228|38345_1  83 KRAALQGVLSQIERSYGRGSVVRLGDADHMVVDSTSTGSLTLDAALGGGGYPKGRVVEIYGPESSGKTTLALHAIAECQKKGGTAAFVDAEHALDPVYAEALGIDVDDLLVSQPDCGEMALDIVDKLVRSSAVDVIVVDSVAALVPRAELEGDMSDSQIGLQARLMSKAMRKITGSLALSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYSSVRLDTRRKEILPE---NSGIRVKVKVVKNKVAAPFKAVMVDILFGSGIDSGGCMLDAALDLGVVERRGSWYAYEGNNLAQGRHNTVEYLKANADMYESIEQVVR 398
                  7889**************************************************************************************************************************************************************************************************************************998865...5799********************************************************************************9987 PP

>> TIGR02237  recomb_radB: DNA repair and recombination protein RadB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.7   0.0   2.7e-16   9.1e-14       4     172 ..     128     298 ..     124     332 .. 0.76

  Alignments for each domain:
  == domain 1    score: 49.7 bits;  conditional E-value: 2.7e-16
    TIGR02237   4 llgGgvergiitqiyGpggsGKtnialilaveaaekgkkvvyiDtEG.lsleRlkqiaedrfekvlsklivfevfdldeqekaiqkaskliekekadlvvvDsltaly.RleksddrislklelarqlslLlslArk.......kdlavvitnqvyedvdnd...tlrplggtlleylskv 172
                  l gGg  +g +++iyGp +sGKt++al +  e ++kg  ++++D+E  l +   +++        ++ l+v+++   d  e a+  + kl++++ +d++vvDs++al  R+e ++d  + ++ l+  l  +++  rk       ++ +v+  nq++++v+         +gg+ l++ s v
  MMETSP1061-20121228|38345_1 128 LGGGGYPKGRVVEIYGPESSGKTTLALHAIAECQKKGGTAAFVDAEHaLDPVYAEALGI-----DVDDLLVSQP---DCGEMALDIVDKLVRSSAVDVIVVDSVAALVpRAELEGDMSDSQIGLQARL--MSKAMRKitgslalSQCTVIFLNQLRSKVGVIygsPEVTSGGNALKFYSSV 298
                  557899****************************************8676655555544.....4799999988...456788889999****************99669****99755555555444..3333333111111167889********999763334445788899888775 PP

>> TIGR02236  recomb_radA: DNA repair and recombination protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.7   0.0   7.6e-12   2.6e-09      75     278 ..     114     303 ..     109     322 .. 0.81

  Alignments for each domain:
  == domain 1    score: 34.7 bits;  conditional E-value: 7.6e-12
    TIGR02236  75 vkklttgskeldellGGG.ietqaitelfGefGsGktqiahqlavnvqlpeekGglegkavyidtentfrperieqlakaeeldeeevlkniyvaraynsnhqlllvekakelikeekepvkllvvdsltahf.raeyvGr...gelaerqqklnkhladlekladlynvavlvtnqvqakPdaffGdptkaiGGhilghaatfrlylr 278
                  v   +tgs  ld  lGGG      + e++G   sGkt +a +   + q   +kGg    a ++d+e+++ p      a+a ++d +++l    v +    ++ l +v+k+   ++ +  +v ++vvds+ a   rae  G     ++  + + ++k + +++    l +++v+  nq+++k  +++G+p+ + GG+ l   +++rl  r
  MMETSP1061-20121228|38345_1 114 VDSTSTGSLTLDAALGGGgYPKGRVVEIYGPESSGKTTLALHAIAECQ---KKGG---TAAFVDAEHALDPV----YAEALGIDVDDLL----VSQPDCGEMALDIVDKL---VRSS--AVDVIVVDSVAALVpRAELEGDmsdSQIGLQARLMSKAMRKITGSLALSQCTVIFLNQLRSKVGVIYGSPEVTSGGNALKFYSSVRLDTR 303
                  67789********99876155668**************9876655555...5665...688********996....5788899988776....77887888888777775...5555..599********9766****996221334445556678888888888899***********************************999666 PP

>> TIGR03881  KaiC_arch_4: KaiC domain protein, PAE1156 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   5.7e-10     2e-07       4      94 ..     118     213 ..     115     269 .. 0.72

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 5.7e-10
    TIGR03881   4 stGveeldklleG.GiPrGffvavvGePGvGktilclhfiakGlregdkviyvtteesresivrqarqfgldlekfk......eekklviidallkek 94 
                  stG   ld +l G G P+G +v + G    Gkt l+lh ia+  ++g ++ +v +e+  + +      +g+d+++         e  l i+d+l+++ 
  MMETSP1061-20121228|38345_1 118 STGSLTLDAALGGgGYPKGRVVEIYGPESSGKTTLALHAIAECQKKGGTAAFVDAEHALDPVYAE--ALGIDVDDLLvsqpdcGEMALDIVDKLVRSS 213
                  789999***9975279*********************************************9755..5777777776678888444455555555443 PP

>> TIGR02238  recomb_DMC1: meiotic recombinase Dmc1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.2e-09   4.2e-07      75     281 ..     114     304 ..      83     310 .. 0.79

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.2e-09
    TIGR02238  75 vlkistGskaldkilGGG.iesmsitevfGefrtGktqls.htlcvtaqlpkelggaeGkvayidtegtfrpdrikkiaerfgldaeavldnilyaraytsehqmelleklaaklaeegdfrllivdsilalf.rvdysGrGelserqqklaqml.sk.lsklseefnv...avlltnqvqadpGatmlfiadakkpvGGhvlahasatrlllrk 281
                  v + stGs +ld  lGGG      + e++G   +Gkt l+ h++        e +   G  a++d+e ++ p      ae  g+d     d++l+++    e  +++++kl    a +    +++vds+ al  r +    G++s+ q  l+  l sk ++k++    +   +v++ nq+ +  G       +++   GG  l   s++rl  r+
  MMETSP1061-20121228|38345_1 114 VDSTSTGSLTLDAALGGGgYPKGRVVEIYGPESSGKTTLAlHAI-------AECQKKGGTAAFVDAEHALDPV----YAEALGIDV----DDLLVSQPDCGEMALDIVDKLVRSSAVD----VIVVDSVAALVpRAEL--EGDMSDSQIGLQARLmSKaMRKITGSLALsqcTVIFLNQLRSKVGV---IYGSPEVTSGGNALKFYSSVRLDTRR 304
                  45789**********8761566789************8862332.......3556667899*********994....699999996....5678999999999999999887766665....*********9746666..5799**9999976541443789998876422279999*****9997...55668888999999999999998775 PP

>> TIGR02239  recomb_RAD51: DNA repair protein RAD51
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.2   5.1e-09   1.7e-06      77     281 ..     116     304 ..     108     310 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 5.1e-09
    TIGR02239  77 slttGskeldklleG.GietGsiteifGefrtGktqlchtlavtcqlpvekgGgeGkalyidtegtfrperllaiaerygldeeevldnvayaraynadhqlklllqaaalmaesryallivdsataly.rtdysGr...gelsarqkhlakflrslqrladefgvavvitnqvvaqvdGaaamfaadakkpiGGnilahasttrlslrk 281
                  s +tGs  ld+ l+G G   G + ei+G   +Gkt l       cq    k+G  G a ++d+e ++ p      ae  g+d ++ l           d     l    +l+  s   +++vds+ al  r++  G    ++++ +   ++k +r+++      + +v+  nq+ ++v     ++ + ++   GGn l   s+ rl  r+
  MMETSP1061-20121228|38345_1 116 STSTGSLTLDAALGGgGYPKGRVVEIYGPESSGKTTLALHAIAECQ----KKG--GTAAFVDAEHALDPV----YAEALGIDVDDLLVS-------QPDCGEMALDIVDKLVRSSAVDVIVVDSVAALVpRAELEGDmsdSQIGLQARLMSKAMRKITGSLALSQCTVIFLNQLRSKVG----VIYGSPEVTSGGNALKFYSSVRLDTRR 304
                  4689******999752789****************99877777888....444..5799********997....58999***9999954.......345566667777788899999**********9759999875111334445556677777776655566788999999999884....355788888999999999999998775 PP

>> TIGR00416  sms: DNA repair protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.1   7.3e-09   2.5e-06      65     183 ..     106     227 ..      72     256 .. 0.83

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 7.3e-09
    TIGR00416  65 lseieleeeprfssglseldrvlGG.GivkGsliliGGdPGiGkstlllqvaaqlaknskkvlyvsgeeslqqvklrasrlglvedelklls....etnleqilaeieelkpkvvvidsiqtly 183
                  l + ++  +   s+g   ld  lGG G  kG ++ i G    Gk+tl l+ +a+  k+  ++ +v +e +l+ v   a+ lg+  d+l + +    e+ l+ + + + +    v+v+ds+ +l 
  MMETSP1061-20121228|38345_1 106 LGDADHMVVDSTSTGSLTLDAALGGgGYPKGRVVEIYGPESSGKTTLALHAIAECQKKGGTAAFVDAEHALDPVY--AEALGIDVDDLLVSQpdcgEMALDIVDKLVRSSAVDVIVVDSVAALV 227
                  5555555666678888999**99862578999****************************************885..7789999999988533344999********************98875 PP

>> TIGR03880  KaiC_arch_3: KaiC domain protein, AF_0351 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   3.3e-07   0.00011       5      69 ..     124     187 ..     120     232 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 3.3e-07
    TIGR03880   5 LDellg.GGliegsvivviGeaGtGkttlslqflyeGLknGekalyisleereeeilgsakskgwd 69 
                  LD+ lg GG ++g v+ + G    Gkttl+l+ + e  k+G +a ++  e+  + +  +a   g+d
  MMETSP1061-20121228|38345_1 124 LDAALGgGGYPKGRVVEIYGPESSGKTTLALHAIAECQKKGGTAAFVDAEHALDPVYAEA--LGID 187
                  7887762689************************************99998888775443..4444 PP

>> TIGR02122  TRAP_TAXI: TRAP transporter solute receptor, TAXI family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.76   2.6e+02     190     208 ..     123     141 ..     121     145 .. 0.90
   2 !   17.1   0.0   1.2e-06   0.00041      82     138 ..     352     409 ..     348     413 .. 0.94

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.76
    TIGR02122 190 kiDAafitaGvptaaieel 208
                  ++DAa+  +G+p++ + e+
  MMETSP1061-20121228|38345_1 123 TLDAALGGGGYPKGRVVEI 141
                  68************99886 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 1.2e-06
    TIGR02122  82 eaelaivqsdvvyeAyeGegefes.kkpvekLralaslypeyiqivvrkdsgiktvkD 138
                   ++l++v    + +AyeG++ +++ ++ ve L+a a +y+++ q+v+++ +++  v+D
  MMETSP1061-20121228|38345_1 352 ALDLGVVERRGSWYAYEGNNLAQGrHNTVEYLKANADMYESIEQVVRTALANYGRVDD 409
                  58999999999************99*******************************99 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   8.6e-05     0.029      37      81 ..     135     179 ..     123     227 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 8.6e-05
    TIGR03420  37 aerllylwGesgsGksHLLqAacaaaeeagksaiylplkelaqll 81 
                  ++r++ ++G+++sGk+ L   a+a+++++g +a++++++++ +  
  MMETSP1061-20121228|38345_1 135 KGRVVEIYGPESSGKTTLALHAIAECQKKGGTAAFVDAEHALDPV 179
                  5678889***********9999999************99887654 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013     0.043       1      33 [.     138     170 ..     138     181 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00013
    TIGR00176   1 vlqivgykdsGKTtlieklvkelkargyrVati 33 
                  v++i g+  sGKTtl  +++ e +++g + a +
  MMETSP1061-20121228|38345_1 138 VVEIYGPESSGKTTLALHAIAECQKKGGTAAFV 170
                  6899*********************99777666 PP

>> TIGR03600  phage_DnaB: phage replicative helicase, DnaB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   0.0   0.00026     0.089     177     234 ..     117     175 ..      69     187 .. 0.88
   2 ?   -0.5   0.2       0.3     1e+02     304     353 ..     213     272 ..     203     276 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00026
    TIGR03600 177 lstGlssLDrltn..GLvkgdlivigaRPsmGKTtlalniaenvalkegkavlvfslems 234
                   stG   LD ++   G  kg ++ i +  s GKTtlal    ++  k+g ++ ++  e +
  MMETSP1061-20121228|38345_1 117 TSTGSLTLDAALGggGYPKGRVVEIYGPESSGKTTLALHAIAECQ-KKGGTAAFVDAEHA 175
                  699********997789*********************9888998.99999988887765 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.3
    TIGR03600 304 kgldlivvDylqlmaas...ekrdrn....eelgeisrelKalAkEL...dvpvvvlaQL 353
                    +d+ivvD +  + +    e+ +      ++   +s++++ +   L   ++ v+ l QL
  MMETSP1061-20121228|38345_1 213 SAVDVIVVDSVAALVPRaelEGDMSDsqigLQARLMSKAMRKITGSLalsQCTVIFLNQL 272
                  4799*****998777665773333330123555667777777776663344677777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (444 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                      154  (0.0375427); expected 82.0 (0.02)
Passed Vit filter:                        43  (0.0104827); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.43
# Mc/sec: 1362.86
//
Query:       MMETSP1061-20121228|38373_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.23
# Mc/sec: 436.14
//
Query:       MMETSP1061-20121228|38398_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 515.96
//
Query:       MMETSP1061-20121228|38409_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|38418_1  [L=1499]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-15   51.7   0.0    2.2e-14   50.1   0.0    1.6  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    8.2e-07   26.5   0.7    4.8e-06   24.0   0.0    2.2  2  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0     0.053   1.1e+02       6      42 ..     911     953 ..     908     955 .. 0.78
   2 !   50.1   0.0   1.1e-17   2.2e-14      83     246 ..    1209    1383 ..    1175    1400 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.053
    TIGR03903   6 vaikllRedaa......eeerlvaRFrReialCarLshPniva 42 
                   aik +R+ +       + +++ +R  Re++  a L h niv+
  MMETSP1061-20121228|38418_1 911 YAIKKVRIRSDsklpqsDFTKRLKRTLREVKSLALLDHSNIVR 953
                  577777665444577666688999******************8 PP

  == domain 2    score: 50.1 bits;  conditional E-value: 1.1e-17
    TIGR03903   83 rLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgved..adeat..ltrttev.........lGsPaYaaPeqLRgepv.taksDlYaWGLivle.CLtGkrvvqGasvaevlykqLsPvdvslPsaiaghpLgevLRkalnkdvrqRaasaealaerfra 246 
                    L lq   ++ + h++G++hRDLkP+ni +     +   kv DFG++   ++ ++  +d++t  lt +t +         +G+ +Ya+Peq++g +   + +D+Y+ G+i++e C    + ++ +     l +++ P+d     a++  +L  +L + +  ++ +R a a+a+++r++ 
  MMETSP1061-20121228|38418_1 1209 SLFLQTCQGVEHVHSQGLIHRDLKPNNIFIDD---TGAVKVGDFGLSRESTDSGEggVDAETvaLTGSTGYdhnaditagVGTRSYASPEQMKGGSDyDSSTDIYSLGIILFElCYPMYTGMERNKELSKLRNHILPDDWMETVAVDFPKLNSLLLSMISNKPEDRPA-AKAVVQRIQS 1383
                   6899*************************965...55789******97655443222555550055444333344445559************977516778**********98887777788888888899999999999999999999999999999999999975.6777777765 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.4      0.07   1.4e+02      19      54 ..     911     946 ..     899     954 .. 0.87
   2 !   24.0   0.0   2.3e-09   4.8e-06      93     151 ..    1190    1267 ..    1141    1295 .. 0.73

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.07
    TIGR03724  19 kavvKeRvkKsYrhpelDeklrkeRtrkEarllsea 54 
                   a+ K+R++   + p+ D   r +Rt +E++ l+ +
  MMETSP1061-20121228|38418_1 911 YAIKKVRIRSDSKLPQSDFTKRLKRTLREVKSLALL 946
                  5799**************************998765 PP

  == domain 2    score: 24.0 bits;  conditional E-value: 2.3e-09
    TIGR03724   93 l..................ellkevGelvgklHkagivhgDlttsNiivkdd.klyliDfGLgkkskevedkavDlhv 151 
                                      +l+ +  + v ++H++g++h Dl ++Ni ++d+  + + DfGL++ s +  + +vD   
  MMETSP1061-20121228|38418_1 1190 ArkgpsggsiggidipyalSLFLQTCQGVEHVHSQGLIHRDLKPNNIFIDDTgAVKVGDFGLSRESTDSGEGGVDAET 1267
                   444555555555555555567777888899*******************755156677*************9999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1499 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.67u 0.14s 00:00:00.81 Elapsed: 00:00:00.47
# Mc/sec: 4209.61
//
Query:       MMETSP1061-20121228|38433_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 554.35
//
Query:       MMETSP1061-20121228|38447_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.11s 00:00:00.24 Elapsed: 00:00:00.36
# Mc/sec: 487.63
//
Query:       MMETSP1061-20121228|38463_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   26.2   0.0    1.3e-06   26.2   0.0    1.0  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    1.1e-05   22.7   0.0    1.3e-05   22.6   0.0    1.0  1  TIGR01500 sepiapter_red: sepiapterin reductase
    3.2e-05   21.5   0.0    3.5e-05   21.4   0.0    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
      7e-05   20.2   0.0    7.5e-05   20.1   0.0    1.0  1  TIGR02415 23BDH: acetoin reductases
     0.0039   14.4   0.0     0.0045   14.2   0.0    1.1  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
  ------ inclusion threshold ------
      0.014   12.7   0.0      0.016   12.5   0.0    1.0  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.2   0.0   1.8e-09   1.3e-06     139     194 ..       2      63 ..       1      66 [] 0.77

  Alignments for each domain:
  == domain 1    score: 26.2 bits;  conditional E-value: 1.8e-09
    TIGR01830 139 llGnagqanYaasKaGligltksl.akEl.....asrnitvnavaPGfietdmteklsekvk 194
                  + G ag a Y++sK+G+  lt+s  a+E      ++   ++ ++aPG i+tdm + + ++ k
  MMETSP1061-20121228|38463_1   2 VKGYAGWAAYSSSKGGVDRLTESAfAEEQddssnSKLCFRAYSIAPGVIDTDMQKMIRNTDK 63 
                  57999****************9852666532211334578999***********99987665 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.9e-08   1.3e-05     155     207 ..       2      61 ..       1      65 [. 0.75

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.9e-08
    TIGR01500 155 ikpfkswalYCaskaaRdmffqvLaleek...ed....vkvLnYapGvlDtdmqsqvree 207
                  +k + +wa Y +sk   d +      ee+    +    ++    apGv+Dtdmq+++r++
  MMETSP1061-20121228|38463_1   2 VKGYAGWAAYSSSKGGVDRLTESAFAEEQddsSNsklcFRAYSIAPGVIDTDMQKMIRNT 61 
                  57789***********99998766666653442233334566779************987 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   5.1e-08   3.5e-05     141     193 ..       2      60 ..       1      65 [. 0.77

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 5.1e-08
    TIGR01829 141 lkGqfGqanysaakaGliGftk.alaqeg...akkgvt..vnviaPGyiatemvkavre 193
                  +kG +G a ys++k G+  +t  a+a+e+   +++ ++     iaPG i+t+m k +r+
  MMETSP1061-20121228|38463_1   2 VKGYAGWAAYSSSKGGVDRLTEsAFAEEQddsSNSKLCfrAYSIAPGVIDTDMQKMIRN 60 
                  69******************97367877522233445511567***********99986 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.0   1.1e-07   7.5e-05     141     193 ..       2      60 ..       1      65 [. 0.76

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 1.1e-07
    TIGR02415 141 vegspelsaysstkfavrgltqtaakeL....akkgitvnay..aPGivktemreeide 193
                  v+g++  +ayss+k  v  lt +a  e     +++     ay  aPG+++t+m++ i +
  MMETSP1061-20121228|38463_1   2 VKGYAGWAAYSSSKGGVDRLTESAFAEEqddsSNSKLCFRAYsiAPGVIDTDMQKMIRN 60 
                  5799999****************9654401113445566777558**********9976 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   6.6e-06    0.0045     140     192 ..       2      60 ..       1      65 [. 0.71

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 6.6e-06
    TIGR01831 140 vmgnrgqvnysaakagligatk.alavel...akrkit..vnciapglidtemvaevek 192
                  v g  g   ys++k g+   t  a+a e    ++ k+      iapg+idt+m +++ +
  MMETSP1061-20121228|38463_1   2 VKGYAGWAAYSSSKGGVDRLTEsAFAEEQddsSNSKLCfrAYSIAPGVIDTDMQKMIRN 60 
                  678889999*******998886256666522233454411467**********999876 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   2.3e-05     0.016     151     198 ..       9      62 ..       2      65 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 2.3e-05
    TIGR01832 151 psytasksavaGltkl.lanew.....akkginvnaiaPGyletnntealrade 198
                  ++y++sk +v  lt + +a e      +k   +  +iaPG ++t+  + +r+ +
  MMETSP1061-20121228|38463_1   9 AAYSSSKGGVDRLTESaFAEEQddssnSKLCFRAYSIAPGVIDTDMQKMIRNTD 62 
                  79************8626666422211334456778**************9865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|38457_1  [L=663]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (663 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       281  (0.0685032); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.32
# Mc/sec: 2734.65
//
Query:       MMETSP1061-20121228|38473_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-17   59.2   0.0    9.9e-17   59.0   0.0    1.0  1  TIGR00231 small_GTP: small GTP-binding protein domain
    0.00048   16.9   0.0    0.00079   16.2   0.0    1.3  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
  ------ inclusion threshold ------
      0.012   13.2   0.0      0.017   12.8   0.0    1.2  1  TIGR02463 MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
      0.015   12.2   0.3       0.11    9.3   0.2    1.9  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
      0.041   11.1   0.0       0.44    7.7   0.0    1.9  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF


Domain annotation for each model (and alignments):
>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.0   1.2e-19   9.9e-17       9     163 ..       1     154 [.       1     155 [. 0.97

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 1.2e-19
    TIGR00231   9 vGhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedGktykvnllDTaGqedfdairrlyvreverslevvdivilvldveeglekqtkeiiheakkkgvpiilvvnKiDlkd..dlktkvkslfaklnaepiielsaetgknidklfklve 163
                  +G+ +vGKs++ ns+ + + + ++++p+++ +   + i+ + + +  +++DTaG ++f++++r     v + + v++++++  ++e +++     ++   +  +vp++lv++K D k+  +++  +++++a + + p+ie s +tg+ + ++f ++ 
  MMETSP1061-20121228|38473_1   1 LGFRAVGKSSIVNSYVTGT-FSDAYDPTIESTHTRT-IRFRRVHFSTDIVDTAGMDEFSRLSRNASLGVHGYALVFSVASR-QSFEMIEQVNGALLNSLGDLPEVPRVLVGTKKDMKEsrQVSAADAQKLADSWGVPYIECSSKTGEKVADVFHMLL 154
                  58999**************.*********9998887.*****9**************************************.*********************************************************************999875 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   9.6e-07   0.00079      14     170 ..       2     160 ..       1     167 [. 0.71

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 9.6e-07
    TIGR03918  14 GrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplG.pvvliDTaGldDegeLGelRvektrevlektdlallvvdae..aeleeleeelleelke.kkipvivvlnkidlkeeeke....keklekkkeeevvlvsakekegieelkealiellpee 170
                  G r +GKSs++N  +    +    ++ t   + ++++    +     ++DTaG+d+ ++L++     +   ++   l+  v +++  + +e+++ +ll++l +  ++p ++v +k d+ke+++     ++kl  + + +++ +s+k++e++ ++ + l+++++++
  MMETSP1061-20121228|38473_1   2 GFRAVGKSSIVNSYVTGTFSDA--YDPTIESTHTRTIRFRRVHfSTDIVDTAGMDEFSRLSRN---ASL-GVHGYALVFSVASRQsfEMIEQVNGALLNSLGDlPEVPRVLVGTKKDMKESRQVsaadAQKLADSWGVPYIECSSKTGEKVADVFHMLLKEVEAD 160
                  88999*******9887766533..333444445566666666524679*******99999754...333.344444555555544113456777788888866369************998876555566667778899***************99999998765 PP

>> TIGR02463  MPGP_rel: mannosyl-3-phosphoglycerate phosphatase homolog
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   2.1e-05     0.017      19      62 ..     120     167 ..     106     175 .] 0.72

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.1e-05
    TIGR02463  19 pAaetlkrLqeagvPvilctsktaaEv....ealrkelglqdPyivEn 62 
                  +Aa+  k     gvP i c+skt + v    ++l ke++ +d ++vEn
  MMETSP1061-20121228|38473_1 120 SAADAQKLADSWGVPYIECSSKTGEKVadvfHMLLKEVEADDGLLVEN 167
                  455666666778***********9988222245778888889999998 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.2   0.00013      0.11     186     340 ..       6     151 ..       1     161 [. 0.44

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00013
    TIGR03594 186 vGKStLvNallgeervivsdiaGtTrDsidievevkgkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvl.DategiseqDlkiaglile.egkalvivvNKwDlvkdekeleelkkeleeklkflkfapivfiSAltgkgveklle 340
                  vGKS++vN+ +  + + ++d       + +i++++ + +  ++DTAG+   ++++        + +l +   a v  +    + e i++ +  +++ + +  + + v+v  K D+     e ++++    +kl+    +p +  S +tg++v ++++
  MMETSP1061-20121228|38473_1   6 VGKSSIVNSYVTGTFSDAYDPTIESTHTRTIRFRRVHFSTDIVDTAGMDEFSRLS-------RNASLGVHGYALVFSVASrQSFEMIEQVNGALLNSLGDlPEVPRVLVGTKKDMK----ESRQVSAADAQKLADSWGVPYIECSSKTGEKVADVFH 151
                  7777777777766544333333222233344455555566777777775544443.......333333322222222221012233344444444333321344555555555554....2223333333444555555555555555555555555 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0   0.00054      0.44     125     173 ..       2      53 ..       1      98 [. 0.80
   2 ?    1.6   0.0     0.037        31      50     100 ..     103     155 ..      93     164 .. 0.77

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.00054
    TIGR03596 125 GiPNvGKStliNrlakkkvakvgn...kpgvTksqqwiklskeleLlDtPGi 173
                  G+  vGKS+++N+ ++    ++ +   +   T++ +  +++ + +++Dt G+
  MMETSP1061-20121228|38473_1   2 GFRAVGKSSIVNSYVTGTFSDAYDptiESTHTRTIRFRRVHFSTDIVDTAGM 53 
                  7778**********9988776654333677899999999999999***9998 PP

  == domain 2    score: 1.6 bits;  conditional E-value: 0.037
    TIGR03596  50 prlivlnkaDladpektkkwl.kyfe.ekgkkalavnakkkkkvkkilkaikk 100
                  pr++v +k+D+ +++++++   +++  + g+  + +++k+++kv+ + +++ k
  MMETSP1061-20121228|38473_1 103 PRVLVGTKKDMKESRQVSAADaQKLAdSWGVPYIECSSKTGEKVADVFHMLLK 155
                  8999999****998887665313444488899999999999999888877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 855.48
//
Query:       MMETSP1061-20121228|38481_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1093.62
//
Query:       MMETSP1061-20121228|38500_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|38494_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.26
# Mc/sec: 3421.56
//
Query:       MMETSP1061-20121228|38526_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|38529_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-07   27.1   0.0    6.1e-07   26.9   0.0    1.0  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein


Domain annotation for each model (and alignments):
>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.5e-10   6.1e-07       9      55 ..      12      58 ..       8      69 .. 0.83

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 1.5e-10
    TIGR01976  9 qfPaLasgedvvflDnpaGtqvPqsvldavsaaltrsnanrggayes 55
                  +P  ++ ++ +f++n++G+qvP+ v+d v+a l+r   ++ g+ ++
  MMETSP1061-20121228|38529_1 12 SHPPHQQQQQQIFFENAGGAQVPKVVIDHVTASLMRRHREKIGSETK 58
                 5788889999************************9987777665544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      141  (0.0343735); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1061-20121228|38535_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.1   0.0       0.03   11.8   0.0    1.1  1  TIGR01496 DHPS: dihydropteroate synthase


Domain annotation for each model (and alignments):
>> TIGR01496  DHPS: dihydropteroate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   7.4e-06      0.03       2      32 ..      59      90 ..      58      97 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 7.4e-06
    TIGR01496  2 imgilNvTpDSfsdggkflskkk.alehaekl 32
                 ++gilN+ +DSfs  g+ ++k+   +++ +kl
  MMETSP1061-20121228|38535_1 59 VVGILNTLDDSFSGMGSSNEKDVkFVSQLHKL 90
                 89************999998875356665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 549.95
//
Query:       MMETSP1061-20121228|38554_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 359.01
//
Query:       MMETSP1061-20121228|38560_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 391.84
//
Query:       MMETSP1061-20121228|38583_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|38577_1  [L=719]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-75  252.4  27.7    1.6e-65  219.3  18.7    2.9  2  TIGR00840 b_cpa1: sodium/hydrogen exchanger 3
    1.1e-27   94.7  19.3    2.9e-25   86.6  10.7    2.6  3  TIGR00831 a_cpa1: Na+/H+ antiporter


Domain annotation for each model (and alignments):
>> TIGR00840  b_cpa1: sodium/hydrogen exchanger 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.3  18.7     8e-69   1.6e-65      11     353 ..      57     428 ..      47     432 .. 0.89
   2 !   29.0   0.0   3.5e-11   7.3e-08     352     425 ..     546     618 ..     530     638 .. 0.83

  Alignments for each domain:
  == domain 1    score: 219.3 bits;  conditional E-value: 8e-69
    TIGR00840  11 ivllillvslakisfhltqkvlrvvpEsvllivvGllvggiikaaer..........................kdpvtldsslfFlvLLPpivldaGyflpkreFfenlgsiLlfAvvGtlinAlvlglslYgillilgleeldiglldallfgslisAvDPvavLavFeevkvnekLyiliFGEsLlNDavtvvlyevlekfvkladeavtivdvvegivsffvvalggllvGvvvgflvalilkftkhir..viepllvllisYlsYllaetlhlSgilalilcgivlkkYveaNiseksettikyflkllsslsEtliFiflGvslvseneewnwafvvltlvfcviyRvlgvvtlsailnkfr..kvkl 353
                  +v l+ lv ++   +h  ++++++vpE++++i +G+  g +i+ + +                           +   +d+++fF++LLPpi+ ++G+ +    Ff  ++ i++fA+vGt i+A+ ++l+l g +++++ +  +  l+++l fg+lis +DPv+ LavF+  +v+++L+ l FGEs+lNDa+++vl+  + kfv ++de   ++ + + ++ +f   +g+ l+G   g  +a++ k +  ++   +e  + +l+ Y+ +l+ae+lhlSgi++++++g+  ++Y+  N+s  +++    +++l + l+Et iF+ lG+s+++ +  wnw+f+  +l+ c i+R+l v  l+ i n+    k+++
  MMETSP1061-20121228|38577_1  57 FVTLLALVLILSKYLHEAKQLSSIVPEAAMVIAIGMGAGYLIHIVLGkrlanaainndnvnndddqqtmeddlAALLSFDPEFFFIFLLPPIIFNTGLRMG-PLFFRHITPIIMFAIVGTAISAIATALILHGFVKMGLSGGFEPTLAELLTFGALISSTDPVSTLAVFQVKRVDPRLFYLCFGESVLNDALAIVLFYSFGKFVSMNDEIDVAAALKKFFIDLFSNFVGSSLLGTFGGCCAAFLFKQIDMRQnrLVEISVYVLLVYIPFLIAEILHLSGIVTILFTGVAANRYIVPNLSAITKVNSDMVFRLGAHLAETAIFLELGLSVFGMVGYWNWVFIGWALLACLIARALNVYPLAFIFNRLLllKDRI 428
                  3344445556666789999*****************99999988766678888999999999999877765555556799********************7.58*****************************************************************************************************765544444555567889999999*****************976665559999999999****************************************************************************************************976555555 PP

  == domain 2    score: 29.0 bits;  conditional E-value: 3.5e-11
    TIGR00840 352 kleikdqlvifyaGlRGAvafaLallldekkveekklfvttvlvvvfltvilqGltikplvevLkvkkkekske 425
                  k+  +   ++ + GlRGAva+a +   ++  + ++k f  t+++++++tv+  Glt++  +++ ++  +  +k+
  MMETSP1061-20121228|38577_1 546 KIRKNTTHMLWFCGLRGAVAYACVRTFPD-DLGHRKDFAMTTMAIILITVFGLGLTTECALSWFNIDVGVDEKK 618
                  66677778999*****************9.6677777889999**********************987665443 PP

>> TIGR00831  a_cpa1: Na+/H+ antiporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.1     0.098     2e+02      85     111 ..      85     111 ..      49     120 .. 0.73
   2 !   86.6  10.7   1.4e-28   2.9e-25      45     305 ..     134     407 ..     128     427 .. 0.80
   3 !    8.8   0.0   5.3e-05      0.11     343     412 ..     550     613 ..     539     663 .. 0.77

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.098
    TIGR00831  85 alvvvtvvavgfllrwvlGiplaaalv 111
                  a+v++  ++ g+l++ vlG  la a++
  MMETSP1061-20121228|38577_1  85 AMVIAIGMGAGYLIHIVLGKRLANAAI 111
                  678999999999999999999999987 PP

  == domain 2    score: 86.6 bits;  conditional E-value: 1.4e-28
    TIGR00831  45 eldrevvlllFlPplLfaeamntdlrelrenlreivllalalvvvtvvavgfllrw......vlGiplaaa..lvlgavlsptDavavaglvkeirlPkkllivleGesllnDgaalvvl.avavavalGkavfdpaaavveFvv....vavGGilaGlvvgyLvtrllrakiD...epleeialllllpfaafllaerlkvsGvvavvaaglvltrvGvtrsisaasRlralsfWavleFlvngivfvlvGvqlpgiies.alkeaevapaaeilal 305
                   +d+e ++++ lPp++f+ ++++    +  ++ +i+++a+ +  + ++a +  l+         G + ++a  l +ga++s+tD+v+ +++++  r+  +l  +  Ges+lnD+ a+v++  +   v + +  +d+aaa  +F +      vG  l G   g  +  +l ++iD   + l+ei + +ll ++ fl+ae l++sG+v ++ +g+   r+ v   +sa ++++   ++ +   l  + +f+ +G+ + g++    +  ++ a  a ++a+
  MMETSP1061-20121228|38577_1 134 SFDPEFFFIFLLPPIIFNTGLRMGPL-FFRHITPIIMFAIVGTAISAIATALILHGfvkmglSGGFEPTLAelLTFGALISSTDPVSTLAVFQVKRVDPRLFYLCFGESVLNDALAIVLFySFGKFVSM-NDEIDVAAALKKFFIdlfsNFVGSSLLGTFGGCCAA-FLFKQIDmrqNRLVEISVYVLLVYIPFLIAEILHLSGIVTILFTGVAANRYIVP-NLSAITKVNSDMVFRLGAHLAETAIFLELGLSVFGMVGYwNWVFIGWALLACLIAR 407
                  79*********************876.55699********998777777665554321001234666555533789******************************************99346666666.889999999888764222256888888777777666.4446776443689*************************************9998.9********************************99986424566666666666666 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 5.3e-05
    TIGR00831 343 reklvvswaGlRGaislaaaLsvpllllsgaaFpdryelvflvavviLfsllvqgvsLpilvkrkevaed 412
                     ++  + GlRGa++ a + ++p  l   + F       + + ++iL++++  g++ +  + + ++   
  MMETSP1061-20121228|38577_1 550 NTTHMLWFCGLRGAVAYACVRTFPDDLGHRKDFA------MTTMAIILITVFGLGLTTECALSWFNIDVG 613
                  4578899******************999988888......666778999998888888888877766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.31
# Mc/sec: 3061.30
//
Query:       MMETSP1061-20121228|38597_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 567.55
//
Query:       MMETSP1061-20121228|38601_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-05   20.8   0.0    3.6e-05   20.5   0.0    1.1  1  TIGR03402 FeS_nifS: cysteine desulfurase NifS
     0.0012   15.8   0.0     0.0015   15.5   0.0    1.1  1  TIGR02006 IscS: cysteine desulfurase IscS
     0.0019   15.4   0.0     0.0023   15.1   0.0    1.1  1  TIGR03235 DNA_S_dndA: cysteine desulfurase DndA
  ------ inclusion threshold ------
      0.016   11.9   0.0      0.021   11.4   0.0    1.2  1  TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family


Domain annotation for each model (and alignments):
>> TIGR03402  FeS_nifS: cysteine desulfurase NifS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0   3.5e-08   3.6e-05       3      27 ..      68      92 ..      66      93 .] 0.95

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3.5e-08
    TIGR03402  3 lDnnattkvdpevleamlpyltekf 27
                 lD+n tt v pevle+mlpylte+f
  MMETSP1061-20121228|38601_1 68 LDYNGTTPVYPEVLESMLPYLTEHF 92
                 9**********************99 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-06    0.0015       5      31 ..      66      92 ..      63      93 .] 0.93

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.4e-06
    TIGR02006  5 iyldyaattpvdkrvaekmleyltvkf 31
                 + ldy+ ttpv + v+e ml+ylt++f
  MMETSP1061-20121228|38601_1 66 LLLDYNGTTPVYPEVLESMLPYLTEHF 92
                 579*********************998 PP

>> TIGR03235  DNA_S_dndA: cysteine desulfurase DndA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.3e-06    0.0023       2      26 ..      68      92 ..      67      93 .] 0.96

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.3e-06
    TIGR03235  2 LDvnattpvdpevaevvrpflleef 26
                 LD n ttpv pev e ++p+l+e+f
  MMETSP1061-20121228|38601_1 68 LDYNGTTPVYPEVLESMLPYLTEHF 92
                 9**********************99 PP

>> TIGR03403  nifS_epsilon: cysteine desulfurase, NifS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.1e-05     0.021       2      27 ..      67      92 ..      66      93 .] 0.94

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.1e-05
    TIGR03403  2 yldnnattlldpkvkelmepflkdiy 27
                  ld n tt + p+v e m p+l++++
  MMETSP1061-20121228|38601_1 67 LLDYNGTTPVYPEVLESMLPYLTEHF 92
                 59*********************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 557.95
//
Query:       MMETSP1061-20121228|38612_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 653.35
//
Query:       MMETSP1061-20121228|38617_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 467.46
//
Query:       MMETSP1061-20121228|38631_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 449.96
//
Query:       MMETSP1061-20121228|38632_1  [L=144]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (144 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 950.32
//
Query:       MMETSP1061-20121228|38645_1  [L=283]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-68  227.4   7.2    1.9e-68  227.4   5.0    1.5  2  TIGR00496 frr: ribosome recycling factor


Domain annotation for each model (and alignments):
>> TIGR00496  frr: ribosome recycling factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.7   0.0      0.21   8.5e+02      93     111 ..      37      55 ..      36      63 .. 0.78
   2 !  227.4   5.0   4.6e-72   1.9e-68       2     176 .]     109     283 .]     108     283 .] 0.99

  Alignments for each domain:
  == domain 1    score: -2.7 bits;  conditional E-value: 0.21
    TIGR00496  93 lPplteErRkelvkvvkki 111
                   P+lt+E+  ++v + k +
  MMETSP1061-20121228|38645_1  37 YPNLTNESYLQSVYHRKTT 55 
                  5999999999998877754 PP

  == domain 2    score: 227.4 bits;  conditional E-value: 4.6e-72
    TIGR00496   2 ekmdkslealkeelskiRtgranpsllDkilveyygaktplkqlasvtvedartlvikpfdkslinaiekailkadlglnPssdGekirvnlPplteErRkelvkvvkkiaEeakvavRnvRrDandkvkklekdkeisEdeekklkeeiqkitdeyikkideilkdkekellev 176
                  e+m+ks+e++ ++l++iRtgra ps+lD+++ +yyg +tp++q+as+ v+ a++l+++pfdks+++ ie+ai+++d+gl+P +dG+ ir+n+P lte+rRke++k+ k+i+E+ kvavRn+Rr a+d +kklekd eisEde+k+ +++iqk+tde +k id i+++keke+++v
  MMETSP1061-20121228|38645_1 109 ERMEKSVESVLQNLNTIRTGRATPSILDRVKADYYGVETPINQMASISVPSAQQLTVQPFDKSTLGVIERAIMESDVGLTPMNDGTLIRLNIPSLTEDRRKEMMKQCKAIGEDGKVAVRNIRRKAVDGIKKLEKDGEISEDESKSGQDDIQKMTDEKVKEIDGIVDKKEKEVMTV 283
                  79***************************************************************************************************************************************************************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (283 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1494.12
//
Query:       MMETSP1061-20121228|38654_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-22   76.8   0.0    4.6e-22   75.9   0.0    1.4  1  TIGR01068 thioredoxin: thioredoxin
    7.7e-17   59.8   0.0    1.3e-16   59.1   0.0    1.4  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    6.8e-16   56.3   0.0    1.4e-15   55.4   0.0    1.5  1  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    2.5e-06   25.1   0.0    4.1e-06   24.3   0.0    1.4  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
     0.0013   16.4   0.0      0.002   15.8   0.0    1.3  1  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
  ------ inclusion threshold ------
      0.016   11.6   0.0      0.021   11.3   0.0    1.2  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
      0.022   12.5   0.1      0.036   11.8   0.0    1.5  1  TIGR00986 3a0801s05tom22: mitochondrial import receptor subunit


Domain annotation for each model (and alignments):
>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   75.9   0.0   7.9e-25   4.6e-22       2      86 ..     126     211 .]     125     211 .] 0.92

  Alignments for each domain:
  == domain 1    score: 75.9 bits;  conditional E-value: 7.9e-25
    TIGR01068   2 seenfeetvassdklvlvDfwAeWCgpCkmlaPvleelake.leekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvG 86 
                  ++++++++++++d+l+lvD +A+WCgpC+++ P l  +a++ + +kv+vvK++ +++++   +y+++ +Pt+ll+k+g++v+r  G
  MMETSP1061-20121228|38654_1 126 TSDQLDQEMTRKDTLILVDVFATWCGPCRVILPQLLVAAQKmVDDKVRVVKIDAEKHSDWVGRYEVEGLPTMLLIKEGSVVDRLEG 211
                  6789999**************************9887776615789***********************************99876 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.1   0.0   2.2e-19   1.3e-16       3      88 ..     122     206 ..     120     211 .] 0.90

  Alignments for each domain:
  == domain 1    score: 59.1 bits;  conditional E-value: 2.2e-19
    TIGR01130   3 vleltkenfddlik.enelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngess 88 
                  v+e+t++++d+ ++ ++ l+Lv  +A WCG C+ + P+   AA+++ +++  v ++k+Da ++++   +y+v+G Pt+ ++++g+ +
  MMETSP1061-20121228|38654_1 122 VTEVTSDQLDQEMTrKDTLILVDVFATWCGPCRVILPQLLVAAQKMVDDK--VRVVKIDAEKHSDWVGRYEVEGLPTMLLIKEGSVV 206
                  8999*****97665156689*****************************9..*******************************9754 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   2.3e-18   1.4e-15       2      83 ..     126     205 ..     125     211 .] 0.93

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 2.3e-18
    TIGR01126   2 vaenfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkk 83 
                  +++++d+ ++ ++  +lv+ +a WCG C+ + P+   +a+++ ++  kv + k+da+++++   +++v+g Pt+ ++k+g+ 
  MMETSP1061-20121228|38654_1 126 TSDQLDQEMTRKDTLILVDVFATWCGPCRVILPQLLVAAQKMVDD--KVRVVKIDAEKHSDWVGRYEVEGLPTMLLIKEGSV 205
                  67899*************************************975..6******************************9984 PP

>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0     7e-09   4.1e-06      52     101 ..     127     180 ..     120     202 .. 0.78

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 7e-09
    TIGR00385  52 vqlltaevlkkgklvLlnvwasWCptCraehplL....kelakeglrivgvdyk 101
                  ++ l++e+ +k  l+L++v+a+WC++Cr   p L    +++  + +r+v +d  
  MMETSP1061-20121228|38654_1 127 SDQLDQEMTRKDTLILVDVFATWCGPCRVILPQLlvaaQKMVDDKVRVVKIDAE 180
                  45677799********************99888723333455556788888765 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.3e-06     0.002      11      88 ..     128     204 ..     121     209 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.3e-06
    TIGR02187  11 eeflkelknpvelvvFtdeskekCeyCeetk.qlleelsevs.dklkleiydldteedkekvekykvervPtvileeegs 88 
                  +++ +e++++  l++ +d   + C  C  +  qll   +++  d  k+++++ d+e++ + v +y+ve  Pt+ l +egs
  MMETSP1061-20121228|38654_1 128 DQLDQEMTRKDTLIL-VDVFATWCGPCRVILpQLLVAAQKMVdD--KVRVVKIDAEKHSDWVGRYEVEGLPTMLLIKEGS 204
                  566677877755554.4446668999987642555544444314..5778899999999****************99984 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   3.5e-05     0.021     370     436 ..     135     200 ..      92     206 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.5e-05
    TIGR00424 370 erkeawlvv.lyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfptillf 436
                  +rk++ ++v ++a wc  c+ +    +  a+k+  + v+v k+ a+ +     + e  ++  pt+ll+
  MMETSP1061-20121228|38654_1 135 TRKDTLILVdVFATWCGPCRVILPQLLVAAQKMVDDKVRVVKIDAEKHSDWVGRYE--VEGLPTMLLI 200
                  57777654439************************999999998887777666665..4678888876 PP

>> TIGR00986  3a0801s05tom22: mitochondrial import receptor subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.1e-05     0.036      38     102 ..      53     118 ..       9     141 .. 0.69

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.1e-05
    TIGR00986  38 ssdsDfed.deeetllDrivaLkdivpptkrqki.adkystttsfvkkalsfaGkaaWavstsaLLl 102
                     sD     e+   + r   Lk++     r  i + k+s + ++v+ +++   k aWa s+++LL 
  MMETSP1061-20121228|38654_1  53 GAPSDVGMdAEQQLAILRSKTLKELKLACSRRNIqYGKFSESEEYVQAIME-DMKKAWAFSVTGLLQ 118
                  333444331244566789999***976666555527899999999987776.56889********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1160.40
//
Query:       MMETSP1061-20121228|38658_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       241  (0.0587518); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.25
# Mc/sec: 1773.93
//
Query:       MMETSP1061-20121228|38677_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       432  (0.105314); expected 82.0 (0.02)
Passed bias filter:                      290  (0.0706972); expected 82.0 (0.02)
Passed Vit filter:                        38  (0.00926377); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.20s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|38673_1  [L=851]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (851 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.46
# Mc/sec: 2441.80
//
Query:       MMETSP1061-20121228|38700_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 413.97
//
Query:       MMETSP1061-20121228|38709_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1164.95
//
Query:       MMETSP1061-20121228|38704_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.25
# Mc/sec: 3072.71
//
Query:       MMETSP1061-20121228|38722_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 451.54
//
Query:       MMETSP1061-20121228|38736_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 980.49
//
Query:       MMETSP1061-20121228|38739_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-14   51.9   0.1    1.5e-14   51.8   0.1    1.0  1  TIGR00380 cobD: cobalamin biosynthesis protein CobD


Domain annotation for each model (and alignments):
>> TIGR00380  cobD: cobalamin biosynthesis protein CobD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.1   3.7e-18   1.5e-14     195     261 ..       2      74 ..       1      75 [] 0.85

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 3.7e-18
    TIGR00380 195 lGkfaaRLdDilnyiPsRlt....viallll..elkkkkafaivlkdarkvPsPnsGytiaalaaiLgvqLek 261
                  +Gk +aR dD++n iP+Rlt    v+a+ +   +    + +a+  kd  +  sPn+G+ +aa+a+iLgv+Lek
  MMETSP1061-20121228|38739_1   2 FGKASARFDDLINLIPARLTalalVLAARIAlgSAPAARGLATAWKDRIQCSSPNAGWPMAAMAGILGVRLEK 74 
                  8*******************8887666555411445567799999***************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 521.01
//
Query:       MMETSP1061-20121228|38744_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 521.67
//
Query:       MMETSP1061-20121228|38747_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   14.4   0.0     0.0057   13.8   0.0    1.4  2  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
     0.0061   13.9   0.0     0.0061   13.9   0.0    1.0  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0065   13.7   0.0     0.0065   13.7   0.0    1.0  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
  ------ inclusion threshold ------
      0.012   13.2   0.0      0.012   13.2   0.0    1.1  1  TIGR02072 BioC: biotin biosynthesis protein BioC


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.2   0.0      0.22   2.3e+02     161     177 ..       6      22 ..       2      26 .. 0.76
   2 !   13.8   0.0   5.6e-06    0.0057      51      81 ..      29      62 ..       9      63 .] 0.74

  Alignments for each domain:
  == domain 1    score: -1.2 bits;  conditional E-value: 0.22
    TIGR01983 161 yllaivlaEyvlkivPk 177
                  y   i++a+ v + vP 
  MMETSP1061-20121228|38747_1   6 YKGHIMVADAVKRHVPS 22 
                  56678899999998886 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 5.6e-06
    TIGR01983 51 lkvlDvGcGgGllse...slarlgaevtgiDlse 81
                  +++D+GcG Gll      ++ l+++v g+Dls+
  MMETSP1061-20121228|38747_1 29 WTMIDLGCGTGLLGSlfrEFSPLETTVWGVDLSH 62
                 579*********97512256777888****9985 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   5.9e-06    0.0061      77     122 ..      12      62 ..       3      63 .] 0.66

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 5.9e-06
    TIGR03534  77 veaaleel...kkke...klkvlDlgtGsGaIalalakel..pdakviavDise 122
                  v  a+++    +      + +++Dlg+G+G ++ +l  e+   +++v++vD+s+
  MMETSP1061-20121228|38747_1  12 VADAVKRHvpsS--FagsPWTMIDLGCGTGLLG-SLFREFspLETTVWGVDLSH 62 
                  554444443330..2344799*********998.66777623367799999885 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   6.4e-06    0.0065      36      86 ..       8      62 ..       4      63 .] 0.66

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 6.4e-06
    TIGR02021 36 GreamrekllewlpkdslkGk..kvlDAGCGtGllsi...elAkrGaivkavDise 86
                 G+  + + +   +p    +G+  +++D GCGtGll     e+      v +vD+s+
  MMETSP1061-20121228|38747_1  8 GHIMVADAVKRHVPSS-FAGSpwTMIDLGCGTGLLGSlfrEFSPLETTVWGVDLSH 62
                 5555555555566655.55543389*********9752225666677888888875 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.2   0.0   1.2e-05     0.012      35      67 ..      28      61 ..       5      63 .] 0.78

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.2e-05
    TIGR02072 35 pakvLdiGcGtGiltrallkrfpqae.lialDis 67
                 p +++d+GcGtG+l +  ++  p ++ +  +D+s
  MMETSP1061-20121228|38747_1 28 PWTMIDLGCGTGLLGSLFREFSPLETtVWGVDLS 61
                 55789********999999988866546666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 361.54
//
Query:       MMETSP1061-20121228|38761_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 341.97
//
Query:       MMETSP1061-20121228|38781_1  [L=671]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (671 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 2270.89
//
Query:       MMETSP1061-20121228|38806_1  [L=212]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (212 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 1076.22
//
Query:       MMETSP1061-20121228|38807_1  [L=614]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (614 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2794.53
//
Query:       MMETSP1061-20121228|38822_1  [L=741]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (741 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.27
# Mc/sec: 3622.37
//
Query:       MMETSP1061-20121228|38839_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 293.31
//
Query:       MMETSP1061-20121228|38847_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 337.31
//
Query:       MMETSP1061-20121228|38850_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 472.38
//
Query:       MMETSP1061-20121228|38868_1  [L=818]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.012   13.8   3.5       0.42    8.8   0.1    3.2  3  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.1    0.0001      0.42       1      32 [.     175     203 ..     175     211 .. 0.90
   2 ?    3.7   0.0    0.0041        17       5      26 ..     231     252 ..     228     260 .. 0.89
   3 ?   -0.5   0.1     0.084   3.5e+02       3      32 ..     281     306 ..     280     322 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 0.0001
    TIGR01557   1 kkrvvWteelhrrFlqAvqklGgedkatPkkI 32 
                  k+ ++Wt+++++   +Av++ G +++   k I
  MMETSP1061-20121228|38868_1 175 KQAIKWTKQEDETLKDAVEEHGAKNW---KLI 203
                  7899*******************999...777 PP

  == domain 2    score: 3.7 bits;  conditional E-value: 0.0041
    TIGR01557   5 vWteelhrrFlqAvqklGgedk 26 
                  +Wt e++r+ ++ v+k G +++
  MMETSP1061-20121228|38868_1 231 PWTAEEDRKVVELVKKHGAKKW 252
                  7*****************9888 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 0.084
    TIGR01557   3 rvvWteelhrrFlqAvqklGgedkatPkkI 32 
                  ++ W e+++r  l+    lG   +    +I
  MMETSP1061-20121228|38868_1 281 KEAWKEKEDRIILESHIALGN-RW---AEI 306
                  789********9999999998.88...455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (818 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.37u 0.12s 00:00:00.49 Elapsed: 00:00:00.34
# Mc/sec: 3175.50
//
Query:       MMETSP1061-20121228|38883_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 521.36
//
Query:       MMETSP1061-20121228|38885_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 401.97
//
Query:       MMETSP1061-20121228|38909_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1390.01
//
Query:       MMETSP1061-20121228|38926_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-26   89.2   0.0    5.1e-26   89.1   0.0    1.0  1  TIGR02294 nickel_nikA: nickel ABC transporter, nickel/metallophore periplasmic binding protein


Domain annotation for each model (and alignments):
>> TIGR02294  nickel_nikA: nickel ABC transporter, nickel/metallophore periplasmic binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.1   0.0   1.2e-29   5.1e-26     367     470 ..       2     108 ..       1     113 [. 0.96

  Alignments for each domain:
  == domain 1    score: 89.1 bits;  conditional E-value: 1.2e-29
    TIGR02294 367 lrkiGikvdligleedkivarrrdGdfdlifaktwGapyDPhsfisalkakahaeeeaqsgla...tkdeldkeikealastdekerqeaYkkiLetlhdeavyiPi 470
                  l+kiGi++++   +++++++r+rdG+f+++f +twGapyDPhs++ + ++++h e++   gl+   t++ l ++i+++  + d ++ qe+Y++iL+ +h++a+++P+
  MMETSP1061-20121228|38926_1   2 LAKIGIDLEVVEADSETYIERERDGKFNVLFSRTWGAPYDPHSYLESWETASHVEYSVLGGLEppfTREGLLEKIEDVQGELDPTKIQEKYREILNDIHQQAIFVPL 108
                  68************************************************************8666799*************************************8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 632.45
//
Query:       MMETSP1061-20121228|38927_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.003   13.9   3.7     0.0028   14.0   2.5    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF


Domain annotation for each model (and alignments):
>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   2.5   6.9e-07    0.0028      78     119 ..       7      48 ..       1      52 [] 0.48

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 6.9e-07
    TIGR03319  78 lqklekrlkqkeekldrkkeklekkeeelekkekeleekeke 119
                  l+++ k   ++e+ ld +++kl+++e +l+++e++l++ ++ 
  MMETSP1061-20121228|38927_1   7 LATQSKTFVEREKDLDDRETKLDEREADLDNREAKLQRDQEL 48 
                  444444555555555555555555555555555555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.30
# Mc/sec: 228.78
//
Query:       MMETSP1061-20121228|38928_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 449.96
//
Query:       MMETSP1061-20121228|38944_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1811.44
//
Query:       MMETSP1061-20121228|38946_1  [L=426]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (426 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2008.12
//
Query:       MMETSP1061-20121228|38955_1  [L=496]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.6e-102  341.0   0.0   2.5e-102  340.4   0.0    1.2  1  TIGR00109 hemH: ferrochelatase


Domain annotation for each model (and alignments):
>> TIGR00109  hemH: ferrochelatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  340.4   0.0    6e-106  2.5e-102       6     321 ..     111     447 ..     107     448 .. 0.92

  Alignments for each domain:
  == domain 1    score: 340.4 bits;  conditional E-value: 6e-106
    TIGR00109   6 vgvlllnlGtPdkleeverylkqllaDpevvdisr..aklrkllaklilklrskkikknYeeigggSPllqiteqqaealeklld..eeidakvyialryaePfleeavkellkdeveklvvlslyPqfSssttgssfkelaealkkleslrlkisviesyydeekyikaladsikeklkkrpep............dkavllfSaHglPkkvvdeGDaYpeeveatvkliaeklg.....akneyaltyQSrvgpeeWLepyteelleklgekkvdklvvvpigFvadhlEtleeidleyrvvaeeagakkykripalNakpefiealaelvlekl 321
                   gvl lnlG+P + ++ve++l++l+aDp++++++   a l+ l+a +i+k r++k+++ Ye+igggSP+lq+t++qa+ l++  +   + + k+y+++ry++P++e+a++ + +d+++ lv+l+lyPqfS+st+gss + l+e + k +   +  +v++s+yd ++y+ka++d i+++ +++ +               +++lfSaHg+Pk+++++GD+Y++++e+++ +i+ kl            l+yQSrvgp eWL+pyt+++l +lg+++v++lvvvpi+Fv++h+Etleeid+eyr++aee g+++++r+pa+N++p+fi  +a++v e l
  MMETSP1061-20121228|38955_1 111 LGVLFLNLGGPTTGDDVEEFLFNLFADPDIIRLPGplAPLQNLIAGFIAKRRAPKSRAAYESIGGGSPILQYTNAQAKLLSESFEtkFNLPIKTYVGMRYWKPYTEDALEAIRRDKIKALVILPLYPQFSISTSGSSLRVLQEDFSKRSYGDMVHTVVPSWYDRPGYVKAMSDLIQKEVDSFTDAekaeakknapdlSSMHVLFSAHGVPKSYIEAGDPYQKQMEKCIDAITGKLYetnspEDLTIHLSYQSRVGPIEWLRPYTDDVLPDLGKSGVQNLVVVPISFVSEHIETLEEIDIEYRELAEESGISNWRRCPAPNTDPTFIADMADMVYEAL 447
                  69*******************************8611568********************************************9888999****************************************************99877666699***********************999886653344444445444589*********************************99665333335789*************************************************************************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (496 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.33
# Mc/sec: 1983.84
//
Query:       MMETSP1061-20121228|38969_1  [L=240]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   11.3   0.0      0.044   10.9   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.1e-05     0.044      47      92 ..     127     170 ..      91     187 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.1e-05
    TIGR01983  47 kleglkvlDvGcGgGllseslarlgaevtgiDlseelievAklhak 92 
                  + ++ +++++Gc  G+l +s+  ++    giD see i++ ++   
  MMETSP1061-20121228|38969_1 127 TRQEDHFIEIGCDFGILVDSVDAKS--SLGIDKSEESIKISRERYP 170
                  4568899*************97665..57**********9987655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (240 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.45
# Mc/sec: 703.94
//
Query:       MMETSP1061-20121228|38978_1  [L=336]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.5e-12   44.2   0.6    4.6e-06   24.4   0.0    2.9  3  TIGR01935 NOT-MenG: RraA family
    1.7e-09   35.4   0.3    4.9e-05   20.9   0.0    2.2  2  TIGR02798 ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
      0.001   17.0   1.4       0.02   12.8   0.3    2.7  2  TIGR02998 RraA_entero: regulator of ribonuclease activity A


Domain annotation for each model (and alignments):
>> TIGR01935  NOT-MenG: RraA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.082   1.1e+02     114     149 ..      37      74 ..      20      75 .. 0.68
   2 !   24.4   0.0   3.4e-09   4.6e-06      44     100 ..      97     152 ..      75     157 .. 0.83
   3 !   16.1   0.0   1.2e-06    0.0016     103     149 ..     171     218 ..     164     219 .. 0.90

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.082
    TIGR01935 114 ksekkg.aGevdvpvtlagvtikpgeyvya.DedGilv 149
                  k++k +   e  ++++l + ti+p +++    ++G +v
  MMETSP1061-20121228|38978_1  37 KATKADsDPESSIQIHLMNGTIRPMNHLAPqHNNGRVV 74 
                  44444415688999999999999998876514566666 PP

  == domain 2    score: 24.4 bits;  conditional E-value: 3.4e-09
    TIGR01935  44 vrevleqpgaGrvLvvDGgGslrrallgdelaelaeengWeGvivnGavrdvaelae 100
                  +r+++ +  a +vLvvD + s  ra+ g+  +++a  +g +G+++ G +rd+a+l++
  MMETSP1061-20121228|38978_1  97 MRALALEAEADEVLVVDTKSS-TRAVAGEIFVNEAGRKGLAGIVIDGPIRDTAHLDT 152
                  577777788899*****9866.569****************************9975 PP

  == domain 3    score: 16.1 bits;  conditional E-value: 1.2e-06
    TIGR01935 103 lGvkalaasPlksekkgaGevd.vpvtlagvtikpgeyvyaDedGilv 149
                  + ++a + +P   + +  G+++   v  +gv ++pg++v++D+dG+lv
  MMETSP1061-20121228|38978_1 171 VRIYATGVTPYSGTTQSPGDMQpAVVSCGGVDVRPGDIVVGDNDGVLV 218
                  56899999************87356899******************98 PP

>> TIGR02798  ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.7   0.0   1.1e-05     0.015      48     121 ..      77     151 ..      38     156 .. 0.80
   2 !   20.9   0.0   3.6e-08   4.9e-05     149     211 ..     196     258 ..     172     265 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 1.1e-05
    TIGR02798  48 kvagsavtvll.qpgdnwmlhvaaeqlkegdvvvaavtaesedgyfgdllatslqargargliidagvrdvrdlk 121
                   +ag a  v+  +p d   +  a     e d v++  t  s+    g+++   +  +g  g++id+ +rd ++l+
  MMETSP1061-20121228|38978_1  77 TMAGVARVVSFtEPNDFLPVMRALALEAEADEVLVVDTKSSTRAVAGEIFVNEAGRKGLAGIVIDGPIRDTAHLD 151
                  4677776666416777665555555556788888889999******************************99986 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 3.6e-08
    TIGR02798 149 vvvanalvnpgdvvvadddgvvvvpaakaeavleaaqareaneedkrvklasgvlgldlykmr 211
                  v + ++ v pgd+vv d+dgv+v  a+  ++ +  aq+ +  e++  + +as + g  l  m 
  MMETSP1061-20121228|38978_1 196 VSCGGVDVRPGDIVVGDNDGVLVGEADAFSKLVPVAQNIQHIESELIAEIASPEGGRSLASMT 258
                  5688999*************************************9999999988888777775 PP

>> TIGR02998  RraA_entero: regulator of ribonuclease activity A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.0      0.37   5.1e+02       3      13 ..      27      37 ..      25      45 .. 0.81
   2 !   12.8   0.3   1.5e-05      0.02      48     154 ..      97     219 ..      61     224 .. 0.69

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 0.37
    TIGR02998  3 ydtselcdlya 13
                 +dts lcd ++
  MMETSP1061-20121228|38978_1 27 LDTSSLCDAHK 37
                 79******876 PP

  == domain 2    score: 12.8 bits;  conditional E-value: 1.5e-05
    TIGR02998  48 iaelleengtgkvllidgggsvrralidlelaqlavenewegivvygavrqvdeleel....dig............iqalaaipvaadeegigesdia.vnfagvtlldddyiyadntgiils 154
                  ++ l  e   ++vl++d   s+r    ++ + + a  ++  giv+ g +r+  +l+      d g            i a +  p + + ++ g+ + a v  +gv + ++d +  dn g+++ 
  MMETSP1061-20121228|38978_1  97 MRALALEAEADEVLVVDTKSSTRAVAGEI-FVNEAGRKGLAGIVIDGPIRDTAHLDTShrcaDHGtgesnpsapavrIYATGVTPYSGTTQSPGDMQPAvVSCGGVDVRPGDIVVGDNDGVLVG 219
                  55666677889******999987555555.56678899*************9999863222232222222222222277777788888888888766441577888888888888888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (336 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1642.53
//
Query:       MMETSP1061-20121228|38991_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|39007_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|39004_1  [L=729]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0064   13.5   0.0      0.022   11.7   0.0    1.9  2  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.0      0.16   6.7e+02      11      20 ..     173     182 ..     132     215 .. 0.63
   2 !   11.7   0.0   5.4e-06     0.022     253     298 ..     638     686 ..     635     715 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 0.16
    TIGR03921  11 tGagvtVAVi 20 
                  tG+gv+V +i
  MMETSP1061-20121228|39004_1 173 TGKGVKVGII 182
                  4555555555 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 5.4e-06
    TIGR03921 253 aqvirrleaTarkpar.grddsvGaGvvdpvaAltee..vapeeekpls 298
                   ++ + +e+Ta + ++ g d   G+G v+++aA+++   + +++ek ++
  MMETSP1061-20121228|39004_1 638 FDIYQIMEDTAIDMNEaGYDFLSGYGHVNALAAVEMVfeKLDKDEKGTK 686
                  589999*****999999******************98543333333222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (729 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 2672.78
//
Query:       MMETSP1061-20121228|39021_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-15   54.1   0.1    4.6e-15   54.1   0.0    1.0  1  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   1.1e-18   4.6e-15     178     268 ..       2      99 ..       1     101 [] 0.75

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 1.1e-18
    TIGR03296 178 lglPDlYdtsydgggetpvGdWslMssGswagk..gstppdmkawlkeklgWlneqsvatkrgk......ttlakagavkvlklavtk...nanealllenr 268
                  l lPDlYdt  dg+g  ++G+++lM++ sw+ +  +  pp+m+aw+k +lgW+++++ +    +      ++ +++  ++++k++  +    ++e++l+e r
  MMETSP1061-20121228|39021_1   2 LKLPDLYDT--DGSGA-GLGYFGLMAN-SWGFDgsQLHPPQMSAWSKLQLGWTQPKTPSVGVENrvaqseVKATAEAPHQLYKVGDDEygfPPGEYFLIEFR 99 
                  89*******..9*999.**********.***6655889******************9888777766655533344444444444444455566688887766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 666.54
//
Query:       MMETSP1061-20121228|39016_1  [L=656]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (656 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.24
# Mc/sec: 3607.70
//
Query:       MMETSP1061-20121228|39079_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|39065_1  [L=239]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-15   54.0   0.0    3.7e-13   47.3   0.0    2.1  2  TIGR02000 NifU_proper: Fe-S cluster assembly protein NifU
    5.8e-08   30.6   0.2    8.3e-07   26.8   0.1    2.0  2  TIGR03341 YhgI_GntY: IscR-regulated protein YhgI
  ------ inclusion threshold ------
      0.033   12.2   0.0      0.047   11.7   0.0    1.2  1  TIGR02514 type_III_yscP: type III secretion system needle length determinant


Domain annotation for each model (and alignments):
>> TIGR02000  NifU_proper: Fe-S cluster assembly protein NifU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.3   0.0   2.7e-16   3.7e-13     220     288 ..      78     147 ..      43     149 .. 0.84
   2 !    4.7   0.0    0.0027       3.7     223     269 ..     160     211 ..     156     226 .. 0.73

  Alignments for each domain:
  == domain 1    score: 47.3 bits;  conditional E-value: 2.7e-16
    TIGR02000 220 riqkiekvleelrPtlqadgGdvelldvdgkevkvkltGacsgcsssaatlki.iqqklverlgeflkvk 288
                   ++++e vl+e+r  l++dgG+v++ ++dg  v+++l+Gac++c ss+ t+k+ ++  l e++ e  +v+
  MMETSP1061-20121228|39065_1  78 TWENVEAVLDEMRHFLIQDGGNVAITEIDGPVVRLELQGACGTCPSSTQTMKMgLERGLKEKIPEIQEVI 147
                  5899***********************************************988*********9988886 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0027
    TIGR02000 223 kiekvleelrPtlqadgGdvelldvdgk.....evkvkltGacsgcsssaat 269
                  +i+ vl+ +rP l   gG +e+  ++g+     ++ + ++Ga ++ +s +  
  MMETSP1061-20121228|39065_1 160 QINVVLDGVRPFLTVAGGSIEIDRIEGEgglqpTIWLDMQGASASLNSVKLE 211
                  78999*****************999987444334667777777666555444 PP

>> TIGR03341  YhgI_GntY: IscR-regulated protein YhgI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.8   0.1     6e-10   8.3e-07     113     178 ..      85     148 ..      76     153 .. 0.86
   2 ?    1.9   0.0     0.025        35     107     138 ..     158     188 ..     147     226 .. 0.67

  Alignments for each domain:
  == domain 1    score: 26.8 bits;  conditional E-value: 6e-10
    TIGR03341 113 vlqseinPqlaahGGevslveitddevavlkfgGGcnGcsavdvtlkegvekellekipelkgvkd 178
                  vl  e+   l + GG+v+++ei    v+ l++ G c  c     t+k g+e+ l+ekipe+++v  
  MMETSP1061-20121228|39065_1  85 VL-DEMRHFLIQDGGNVAITEID-GPVVRLELQGACGTCPSSTQTMKMGLERGLKEKIPEIQEVIQ 148
                  44.4677789999********95.56889*********************************9975 PP

  == domain 2    score: 1.9 bits;  conditional E-value: 0.025
    TIGR03341 107 eerieyvlqseinPqlaahGGevslveitdde 138
                  ee+i+ vl   + P l+  GG++++  i  ++
  MMETSP1061-20121228|39065_1 158 EEQINVVL-DGVRPFLTVAGGSIEIDRIEGEG 188
                  35666555.679************99998776 PP

>> TIGR02514  type_III_yscP: type III secretion system needle length determinant
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.5e-05     0.047      51     102 ..     166     226 ..     132     235 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.5e-05
    TIGR02514  51 p......qLggleiriar..esgklsveilae.passqllqqarqeLleRLqrlepeqpvr 102
                            g++i+i+r   +g+l+ +i  + +++s++l+  + e+++RLqr  +   +r
  MMETSP1061-20121228|39065_1 166 DgvrpflTVAGGSIEIDRieGEGGLQPTIWLDmQGASASLNSVKLEIAQRLQRHFMMAGLR 226
                  444444455678888888557899*****888799******************65555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (239 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1371.54
//
Query:       MMETSP1061-20121228|39070_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.8   0.2      0.034   11.8   0.1    1.4  1  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain
      0.019   11.8   0.0      0.025   11.4   0.0    1.1  1  TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.1   1.7e-05     0.034     139     182 ..     294     348 ..     261     349 .. 0.73

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 1.7e-05
    TIGR03296 139 dttlridgttigs..kklvg.........dytiqpedagvgVlaHElGHdlglPD 182
                   t ++ +g+ i +   ++v+         + t+ p d  + ++aHElGH l+l++
  MMETSP1061-20121228|39070_1 294 MTGHQSQGICIDRrwRTVVMgerstkgypEPTKRPHDCLAKTMAHELGHALDLGH 348
                  444566666666644333335666666778899999999************9975 PP

>> TIGR01536  asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.2e-05     0.025       2      69 ..     198     264 ..     196     279 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.2e-05
    TIGR01536   2 giagivdlkakake.eeeaikemletlahRGPDaegvwkdekeenailghrRLaiidlsegaQPlsnek 69 
                  g+agi +  + +++  +e  +  ++   +RGPD++ ++k   e +  +  + L+ +d +  +QP ++ +
  MMETSP1061-20121228|39070_1 198 GFAGIEECVCPLETtVQEDFRYFIDHKLRRGPDGKMMHKA--ERKTRFLDVLLSSMDYKREMQPAHSSS 264
                  56666666666666655677778888889******98777..68999*****************98876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2416.42
//
Query:       MMETSP1061-20121228|39099_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 608.62
//
Query:       MMETSP1061-20121228|39095_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.5e-138  459.0   5.6   1.6e-117  390.9   0.4    2.0  2  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
    4.2e-78  261.4  19.9    2.9e-63  212.4   3.5    2.0  2  TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
    1.2e-69  233.2  17.9    1.2e-53  180.4   2.0    2.0  2  TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
    8.3e-58  194.4   6.0    1.8e-48  163.5   0.0    2.0  2  TIGR01349 PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
    4.8e-07   26.4   0.2    8.6e-07   25.6   0.1    1.4  1  TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit
    7.4e-05   18.4   0.1    9.4e-05   18.1   0.1    1.1  1  TIGR02712 urea_carbox: urea carboxylase
  ------ inclusion threshold ------
      0.025   12.5   0.6       0.15   10.0   0.4    2.1  2  TIGR03077 not_gcvH: glycine cleavage protein H-like protein
      0.037   11.0   4.9      0.052   10.6   3.4    1.2  1  TIGR00601 rad23: UV excision repair protein Rad23
      0.098    9.3   5.4       0.73    6.5   0.1    3.2  4  TIGR03794 NHLM_micro_HlyD: NHLM bacteriocin system secretion protein


Domain annotation for each model (and alignments):
>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.5   0.4   3.5e-23   1.6e-20       2     122 ..      58     177 ..      57     187 .. 0.82
   2 !  390.9   0.4  3.6e-120  1.6e-117     159     404 .]     190     438 .]     172     438 .] 0.93

  Alignments for each domain:
  == domain 1    score: 71.5 bits;  conditional E-value: 3.5e-23
    TIGR01347   2 eikvPelaesvteatvaewekkvGdavkkdeliveletDkvslevaseadGvleellekegdtvesgevlaeleessaaaeaasekskeekeekaaakaekakeaaekkkalspaarklak 122
                  +i vP++++s+te+t+++   ++Gd v+ d++++ +etDkvs++v +++ Gvl+e++ + +d+ve+g +l +l+ +++a+e+ s++   +kee+ + +a++a+ aa+ +++++ aa+  a+
  MMETSP1061-20121228|39095_1  58 TIDVPTMGDSITEGTIVDMPVAIGDYVQSDDVVLVIETDKVSVDVRAPEGGVLTEVMGEIDDVVEVGSQLYRLDTDADAPESPSDP-MPAKEETLTPSASAAPVAAAVAAPAAAAAAAAAA 177
                  699***********************************************************************887777766666.5777777777777777666665555444444443 PP

  == domain 2    score: 390.9 bits;  conditional E-value: 3.6e-120
    TIGR01347 159 aaakaakaaenaatrseeRvkmtRlrqriaerLleaknstamLttFnevdmsavmelRkkykeefekkhgvklGFmsffvkavvealkefPevnaeidg..ddivykkylDisvavstdkGLvvPvvRdadalsladiekeikelakkaregklaledltgGtFtitnGGvfGsllstPiinppqsaiLGmhaikeRPvavn.gkieirPmmYlaLsYDhRliDGkeavtFLvkikelledperllldv 404
                  +a k a+ ++  ++r+e+R km+R+rq++a rL+ a+n++amLttF+e dm ++me+Rkky+e+f  khg+klGFms fv a+++al+e+P vna+id+  ++ivy++y Disvav+++kGLv+P++R+++ +s+ad+e++i+ + +ka++g l+l+d++gGtFti+nGGvfGsl++tPiin pqsa+LGmha k R v+ + g+++ rPmmYlaL+YDhRliDG+e vtFL++i e + dp++lll+v
  MMETSP1061-20121228|39095_1 190 PAPKVAEVQAFLGARTERRTKMSRMRQTVATRLKGAQNTAAMLTTFQECDMGNLMEMRKKYQEAFVAKHGIKLGFMSAFVLAATAALQEVPLVNAYIDDetKEIVYRDYCDISVAVASPKGLVTPILRNTELMSFADVEHNIAAYVEKAKNGTLSLDDMSGGTFTISNGGVFGSLMGTPIINLPQSAVLGMHATKMRAVVNEkGEVVARPMMYLALTYDHRLIDGREGVTFLKSIAEKVSDPSKLLLEV 438
                  2233444445559*************************************************************************************9778************************************************************************************************99888********************************************86 PP

>> TIGR02927  SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   6.1   5.5e-18   2.5e-15     128     224 ..      58     153 ..      46     163 .. 0.75
   2 !  212.4   3.5   6.3e-66   2.9e-63     302     568 ..     157     428 ..     154     432 .. 0.88

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 5.5e-18
    TIGR02927 128 evempelGesvteGtvtrwlkavGdtvevdepllevstdkvdteipspvaGtlleilaeeddtvevGavlakiGddagaedepkeeekpekseakse 224
                   + +p +G+s+teGt+     a+Gd v+ d+ +l + tdkv  ++ +p  G+l e++ e dd+vevG++l ++  da a ++p+ ++ p+k+e+ + 
  MMETSP1061-20121228|39095_1  58 TIDVPTMGDSITEGTIVDMPVAIGDYVQSDDVVLVIETDKVSVDVRAPEGGVLTEVMGEIDDVVEVGSQLYRLDTDADAPESPS-DPMPAKEETLTP 153
                  477899999999999999999999999999999999999999999999999999999999999999999999988888777775.455665554332 PP

  == domain 2    score: 212.4 bits;  conditional E-value: 6.3e-66
    TIGR02927 302 aaaeaaeeakeaaaaeaaaaapaapaaakka..pepekak....lrGttq...kvnrirqitakktveslqisaqltqvhevdvtrvaalrarakaefaekeGvnltflpffvkavvealkahpnvnasyneetkevtyhdaehlgiavdtprGllspviknagdlslpglakaiadlaarardnklkpdelsGgtftitniGseGalfdtpilvppqaailGtGaivkrprvikdedGnesiairsvvylpltydhrlvdGadagrflttikkrl 568
                  aa  aa  a+ aaaa aaaaap apaaa k+  p+p+ a+    l  +t+   k++r+rq +a ++  + +++a lt+ +e d+  ++++r++ +++f +k+G++l f+  fv a++ al+  p vna +++etke+ y d  ++++av +p+Gl++p+++n++ +s++++ ++ia   ++a+++ l  d++sGgtfti+n G  G+l+ tpi++ pq a+lG+ a + r +v  +e+G e++  r ++yl+ltydhrl+dG +   fl +i +++
  MMETSP1061-20121228|39095_1 157 AAPVAAAVAAPAAAAAAAAAAPPAPAAAPKTppPAPKVAEvqafLGARTErrtKMSRMRQTVATRLKGAQNTAAMLTTFQECDMGNLMEMRKKYQEAFVAKHGIKLGFMSAFVLAATAALQEVPLVNAYIDDETKEIVYRDYCDISVAVASPKGLVTPILRNTELMSFADVEHNIAAYVEKAKNGTLSLDDMSGGTFTISNGGVFGSLMGTPIINLPQSAVLGMHATKMRAVV--NEKG-EVV-ARPMMYLALTYDHRLIDGREGVTFLKSIAEKV 428
                  444555666667777777888888888887766444444311116667754449****************************************************************************************************************************************************************************9877655..3555.555.5*************************998876 PP

>> TIGR01348  PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.4   9.4   4.6e-19   2.1e-16     135     281 ..      36     186 ..       9     204 .. 0.77
   2 !  180.4   2.0   2.5e-56   1.2e-53     329     587 .]     175     436 ..     169     436 .. 0.91

  Alignments for each domain:
  == domain 1    score: 57.4 bits;  conditional E-value: 4.6e-19
    TIGR01348 135 gaaadaakkeaaPaeaqasgvkevkvPdiGd.aekvevievlvkvGdtvsadqslitlesdkaslevPapasGvvkslkvkvGdkvktGdlilvlevegaapaaaeapakaeaaaaapaaeaeeaaaapaaakaea...kapvdantenda 281
                   + +++ ++   P+ a a  +k + vP +Gd + +++++++ v +Gd v+ d  ++ +e+dk s++v ap  Gv+ ++  ++ d v++G+ +  l++++ ap +++ p +a+ ++ +p+a+a + aaa aa+ a a   +a+  a++  ++
  MMETSP1061-20121228|39095_1  36 RSRTSSVRHFVKPSWAAAMPIKTIDVPTMGDsITEGTIVDMPVAIGDYVQSDDVVLVIETDKVSVDVRAPEGGVLTEVMGEIDDVVEVGSQLYRLDTDADAPESPSDPMPAKEETLTPSASAAPVAAAVAAPAAAAaaaAAAPPAPAAAPK 186
                  44445556667899998999***********999*********************************************************************999998888887777766665555444333333000333333333333 PP

  == domain 2    score: 180.4 bits;  conditional E-value: 2.5e-56
    TIGR01348 329 aeaaaaaaaggipgllPlPkv.dfskf...GeveevelsrikkisganlarnWvmiPhvtqfdkaditelealrkqqneeaakekegvkltvlaillkavaaalkklPkfnasldedgerlilkkyvniGvavdtPnGllvPvikdvdrkgivelarelsdlakkardkkltademqGacftisslGgiGgtaftPivnaPevailGvsksalePvWdgk.efePrlllPlslsydhrvidGadaarflkylselladirrlll 587
                  a a +a aa++  + +P Pkv + + f    + +++++sr+++  ++ l+ +  +  ++t f ++d+ +l ++rk+++ ea + k+g+kl  ++ ++ a++aal+++P  na +d +++++++++y +i vav  P+Gl+ P++++ +  +  ++ ++++   +ka+++ l+ d+m+G++ftis+ G  G+   tPi+n P+ a+lG+  + ++ v ++k e + r ++ l+l+ydhr+idG ++  flk ++e ++d+ +lll
  MMETSP1061-20121228|39095_1 175 AAAPPAPAAAP-KTPPPAPKVaEVQAFlgaRTERRTKMSRMRQTVATRLKGAQNTAAMLTTFQECDMGNLMEMRKKYQ-EAFVAKHGIKLGFMSAFVLAATAALQEVPLVNAYIDDETKEIVYRDYCDISVAVASPKGLVTPILRNTELMSFADVEHNIAAYVEKAKNGTLSLDDMSGGTFTISNGGVFGSLMGTPIINLPQSAVLGMHATKMRAVVNEKgEVVARPMMYLALTYDHRLIDGREGVTFLKSIAEKVSDPSKLLL 436
                  23333444444.5567889984455553114557789****************************************9.9***********99999999999********************************************************************************************************************999**************************************99986 PP

>> TIGR01349  PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   1.8   2.9e-11   1.3e-08       2     125 ..      59     187 ..      58     206 .. 0.66
   2 !  163.5   0.0   4.1e-51   1.8e-48     213     437 .]     210     436 ..     202     436 .. 0.95

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 2.9e-11
    TIGR01349   2 ikmPaLsPtmeeGnlakwkkkeGDkvkeGdviaeietDkAtldvesqeegylakilvpegtkdvpvnkliavlveekedvedavknyklessas......apkpkekaeqsaeesaesakseasaekake 125
                  i +P++  +++eG+++   +  GD v++ dv++ ietDk  +dv + e g+l  ++ +     v+v++ +  l ++ ++ e+    +  ++++       ap +++ a  +a ++a +a ++a+a   k+
  MMETSP1061-20121228|39095_1  59 IDVPTMGDSITEGTIVDMPVAIGDYVQSDDVVLVIETDKVSVDVRAPEGGVLTEVMGEID-DVVEVGSQLYRLDTDADAPESPSDPMPAKEETLtpsasaAPVAAAVAAPAAAAAAAAAAPPAPAAAPKT 187
                  889**************************************************9876555.459***999988887777665544444444333122112444433333222222222333333222222 PP

  == domain 2    score: 163.5 bits;  conditional E-value: 4.1e-51
    TIGR01349 213 plsniRkviakRLleskqtiPhyylsvevnvdkllklrkelnaaaee..rvklsvnDlivkAvalAlrevPevnsswtd..dvirkyknvDisvAvaipaGlitPivrnaeakgleeisnevkelakkArenkLkpeefqgGtftisnlGmlgikqFaaiinpPqaailavgasedkavvknkeekglevasilsvtlsvDHRviDGavgAeflkelkkllenPielll 437
                   +s +R+++a RL  +++t       +e+++++l+++rk+ + a+     +kl      v A ++Al+evP vn++  d  + i++ +  DisvAva p+Gl+tPi+rn+e+ + +++ +++  +++kA+++ L  ++  gGtftisn G++g  + + iin Pq+a+l++ a++ +avv++k    +    ++ + l+ DHR iDG  g +flk++ + + +P +lll
  MMETSP1061-20121228|39095_1 210 KMSRMRQTVATRLKGAQNTAAMLTTFQECDMGNLMEMRKKYQEAFVAkhGIKLGFMSAFVLAATAALQEVPLVNAYIDDetKEIVYRDYCDISVAVASPKGLVTPILRNTELMSFADVEHNIAAYVEKAKNGTLSLDDMSGGTFTISNGGVFGSLMGTPIINLPQSAVLGMHATKMRAVVNEKG--EVVARPMMYLALTYDHRLIDGREGVTFLKSIAEKVSDPSKLLL 436
                  5799*************************************9876442389**************************9977789**********************************************************************************************998877..5777899**********************************97 PP

>> TIGR01108  oadA: oxaloacetate decarboxylase alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.1   1.9e-09   8.6e-07     488     580 ..      33     125 ..       6     127 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.9e-09
    TIGR01108 488 vseskevskleasaaaaksagtvaakakastdvtaplaGsivkvkvseGdevkeGevllvleamkmeteikaaaaGiveeilvkkGdkvavge 580
                   +  + +s +  +++ +  a++ + + +  t   +   G+iv++ v  Gd v++ +v+lv+e+ k+  +++a++ G+++e++ +  d+v vg 
  MMETSP1061-20121228|39095_1  33 ATSRSRTSSVRHFVKPSWAAAMPIKTIDVPTMGDSITEGTIVDMPVAIGDYVQSDDVVLVIETDKVSVDVRAPEGGVLTEVMGEIDDVVEVGS 125
                  33333444455555554455444455555555556667*********************************************9999999986 PP

>> TIGR02712  urea_carbox: urea carboxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.1   0.1   2.1e-07   9.4e-05    1137    1198 ..      67     128 ..      24     131 .. 0.87

  Alignments for each domain:
  == domain 1    score: 18.1 bits;  conditional E-value: 2.1e-07
    TIGR02712 1137 selagrlWkvlvevgdeveagdklviveamkmelavsapvaGkvkkilvkeGdaveaGdalv 1198
                   s  +g++  + v++gd v+++d+++++e+ k+ + v+ap+ G++++++ +  d ve G++l 
  MMETSP1061-20121228|39095_1   67 SITEGTIVDMPVAIGDYVQSDDVVLVIETDKVSVDVRAPEGGVLTEVMGEIDDVVEVGSQLY 128 
                   5668999999**********************************************999875 PP

>> TIGR03077  not_gcvH: glycine cleavage protein H-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.12        53      33      49 ..      57      73 ..      53      76 .. 0.86
   2 ?   10.0   0.4   0.00033      0.15      25      79 ..      64     119 ..      61     126 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.12
    TIGR03077 33 lhidlpsvgslikegev 49
                   id+p++g +i eg +
  MMETSP1061-20121228|39095_1 57 KTIDVPTMGDSITEGTI 73
                 579***********975 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 0.00033
    TIGR03077  25 mqenlgailhidlp.svgslikegevlvilessksaievlspvsgevievnlalkd 79 
                  m++ + +   +d+p ++g +++  +v++++e+ k +++v +p  g + ev  +++d
  MMETSP1061-20121228|39095_1  64 MGDSITEGTIVDMPvAIGDYVQSDDVVLVIETDKVSVDVRAPEGGVLTEVMGEIDD 119
                  55556666679999569*************************99999999776655 PP

>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   3.4   0.00011     0.052      84     152 ..     150     219 ..      68     256 .. 0.64

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00011
    TIGR00601  84 aaePaatpesaptptp.satpasvaekksaaPasaveeessaeeeatatalesedtsaesegdsdre..tlv 152
                  + +P+  +++ap ++  +a++a+ a++++a+Pa a++++++++ ++ a +++   + +e  ++++r   t++
  MMETSP1061-20121228|39095_1 150 TLTPS--ASAAPVAAAvAAPAAAAAAAAAAPPAPAAAPKTPPPAPKVAEVQAFLGARTERRTKMSRMrqTVA 219
                  33333..34444444435677777888888888899999999988888887776666666555555433333 PP

>> TIGR03794  NHLM_micro_HlyD: NHLM bacteriocin system secretion protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.1    0.0016      0.73      63      92 ..      67      96 ..      56     103 .. 0.85
   2 ?    3.3   0.0     0.014       6.5     255     290 ..     101     136 ..      97     140 .. 0.87
   3 ?   -2.3   0.1      0.76   3.5e+02     142     247 ..     223     283 ..     194     297 .. 0.50
   4 ?   -0.1   0.0      0.15        70     255     302 ..     376     423 ..     373     430 .. 0.85

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0016
    TIGR03794 63 skgsGqvidlkvkvGdqvkkgdvvarieqp 92
                 s + G+++d+ v++Gd v+  dvv +ie  
  MMETSP1061-20121228|39095_1 67 SITEGTIVDMPVAIGDYVQSDDVVLVIETD 96
                 6678********************999865 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.014
    TIGR03794 255 eivsqhdGrvlevsltkGdlVeagaslaslevedat 290
                   ++++  G ++ev+ +  d+Ve g++l +l+ +  +
  MMETSP1061-20121228|39095_1 101 DVRAPEGGVLTEVMGEIDDVVEVGSQLYRLDTDADA 136
                  688999999*********************987655 PP

  == domain 3    score: -2.3 bits;  conditional E-value: 0.76
    TIGR03794 142 gklreeeaaLsqevakqrqllsrklaklkrarillqqarkeqekrdeadkaeaeyelqtkadeeeletvvaklkqadlqlasvaekeletvearikevreeieele 247
                  + ++++ a+L                                              + ++ d  +l ++ +k+++a ++  +++  ++       + + +e+  ++
  MMETSP1061-20121228|39095_1 223 KGAQNTAAML---------------------------------------------TTFQECDMGNLMEMRKKYQEAFVAKHGIKLGFMSAFVLAATAALQEVPLVN 283
                  2222222222.............................................245555555555555566666666666665555555555555555555555 PP

  == domain 4    score: -0.1 bits;  conditional E-value: 0.15
    TIGR03794 255 eivsqhdGrvlevsltkGdlVeagaslaslevedatseglegvlYvpv 302
                   +   h  ++  v  +kG++V+  +  + l  + + ++g egv+++++
  MMETSP1061-20121228|39095_1 376 AVLGMHATKMRAVVNEKGEVVARPMMYLALTYDHRLIDGREGVTFLKS 423
                  5666777788889999****************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.44
# Mc/sec: 1313.89
//
Query:       MMETSP1061-20121228|39111_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 364.54
//
Query:       MMETSP1061-20121228|39103_1  [L=343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 1741.24
//
Query:       MMETSP1061-20121228|39124_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   14.9   0.0     0.0017   14.9   0.0    1.1  1  TIGR02289 M3_not_pepF: oligoendopeptidase, M3 family


Domain annotation for each model (and alignments):
>> TIGR02289  M3_not_pepF: oligoendopeptidase, M3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   4.1e-07    0.0017     183     210 ..      35      62 ..       4      73 .. 0.76

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 4.1e-07
    TIGR02289 183 ydeLvkvRtkiAknlgfeNyvdlaykll 210
                  + e+v++R+k A++lgfe y d++    
  MMETSP1061-20121228|39124_1  35 FLEIVQLRNKLARMLGFEDYYDYTVTNA 62 
                  6699*******************87665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 406.12
//
Query:       MMETSP1061-20121228|39117_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2230.16
//
Query:       MMETSP1061-20121228|39143_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 499.26
//
Query:       MMETSP1061-20121228|39144_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 437.65
//
Query:       MMETSP1061-20121228|39141_1  [L=933]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.43u 0.12s 00:00:00.55 Elapsed: 00:00:00.37
# Mc/sec: 3328.27
//
Query:       MMETSP1061-20121228|39156_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-07   26.9   0.0    8.1e-07   26.9   0.0    1.1  1  TIGR02072 BioC: biotin biosynthesis protein BioC
  ------ inclusion threshold ------
       0.03   11.5   0.0      0.031   11.4   0.0    1.0  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase


Domain annotation for each model (and alignments):
>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   3.9e-10   8.1e-07      90     133 ..      23      66 ..       5      68 .] 0.87

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 3.9e-10
    TIGR02072  90 klplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafs 133
                  + +    sfD  +Snl+l+ ++d++ v+ae+arvlkpgG++ f+
  MMETSP1061-20121228|39156_1  23 HNKYPAGSFDRYFSNLCLHYAEDPDVVIAEAARVLKPGGIAGFT 66 
                  45566778********************************9997 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   1.5e-05     0.031     101     138 ..      25      62 ..       6      66 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 1.5e-05
    TIGR01934 101 pfednsfdavtiafGlRNvtdiekaLkelaRVlkpggr 138
                  +++  sfd +     l   +d + ++ e+aRVlkpgg 
  MMETSP1061-20121228|39156_1  25 KYPAGSFDRYFSNLCLHYAEDPDVVIAEAARVLKPGGI 62 
                  4778889999999999999*****************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|39161_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 425.96
//
Query:       MMETSP1061-20121228|39169_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.37    8.6   3.4       0.29    9.0   1.1    1.8  2  TIGR03493 cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT


Domain annotation for each model (and alignments):
>> TIGR03493  cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   1.1   7.1e-05      0.29       2      34 ..       2      33 ..       1      41 [. 0.75
   2 ?   -1.5   0.1      0.13   5.3e+02      11      22 ..      38      49 ..      34      55 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 7.1e-05
    TIGR03493  2 nlvdivqlvllcAliffpLgyLarrvlrrirdt 34
                 n+  iv lvl+ A+  f+L y   r   ++  +
  MMETSP1061-20121228|39169_1  2 NMFGIVTLVLIMAITVFALPYFR-RFHFEWFYY 33
                 6788*****************75.444455555 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.13
    TIGR03493 11 llcAliffpLgy 22
                  ++Al f  L y
  MMETSP1061-20121228|39169_1 38 FIAALFFVCLHY 49
                 578888888877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       220  (0.0536324); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 817.08
//
Query:       MMETSP1061-20121228|39206_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|39226_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0011   16.5   0.0     0.0019   15.8   0.0    1.4  1  TIGR00537 hemK_rel_arch: putative methylase
     0.0064   14.7   0.7     0.0064   14.7   0.5    2.0  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   9.1e-07    0.0019      46     123 ..     183     258 ..     168     275 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 9.1e-07
    TIGR00537  46 atdinPfavkllkenaklnnveldvlesdlfenvegkfdvilfnpPyleleedekrgdyldlaidGGkdGrkvidrfl 123
                  ++ ++P+ +  lke    ++v  +v+++++    +g f+v l++ Py+  + ++ ++ y+   +  Gk Grkv    +
  MMETSP1061-20121228|39226_1 183 GITVDPVRISSLKEFGTPEEVAARVVTAEVNR--DGIFEVTLLEDPYVAQSSEDGVDAYILKYLSVGKRGRKVYTNKI 258
                  56788999999999999999999999999855..689************************9**********986555 PP

>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0      0.51   1.1e+03      21      41 ..      55      75 ..      48      86 .. 0.53
   2 !   14.7   0.5   3.1e-06    0.0064       5      42 ..      92     130 ..      88     139 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 0.51
    TIGR02811 21 gaaagavaaatgrvasasaaa 41
                 g+  gav   ++++  a+a a
  MMETSP1061-20121228|39226_1 55 GSWLGAVECWSSQTNTAKASA 75
                 555566655555554443332 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 3.1e-06
    TIGR02811   5 qkadlsRRdLLkglavgaaag.avaaatgrvasasaaae 42 
                  +++ +sRR+LL  +a g + g a+  +t+++asa+ + +
  MMETSP1061-20121228|39226_1  92 VQSSTSRRSLLTTIAGGLLVGeAALMGTPTLASAADDEA 130
                  68899************9988345579999999998765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.40
# Mc/sec: 973.42
//
Query:       MMETSP1061-20121228|39235_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-13   48.6   0.0    1.4e-13   48.5   0.0    1.0  1  TIGR02244 HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase


Domain annotation for each model (and alignments):
>> TIGR02244  HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.5   0.0   3.5e-17   1.4e-13      79     175 ..       2      97 ..       1      98 [] 0.92

  Alignments for each domain:
  == domain 1    score: 48.5 bits;  conditional E-value: 3.5e-17
    TIGR02244  79 ldsfkqikaatyhGlrklskeeveelYgs.kllsrsneesklklldtlFslpealllaqlvdylddnkelaldekqiykdvraaldevhvegslkkkv 175
                  l++ +++ +a   G++k+s+  + + Y   + l+ ++++ +l+ l++lFs++e +l+a++++y++d+ ++++  +++ +dv  a+ + h++g +++ v
  MMETSP1061-20121228|39235_1   2 LSYTHKVAVA-WEGREKVSTARIFKEYRGkRGLNPRERKVRLQPLNDLFSMAECCLIADTIQYFKDH-DIDFCSSNVVQDVVGAIGDTHMSGDFHRIV 97 
                  5677889999.8************9997637799999999***************************.*************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 497.50
//
Query:       MMETSP1061-20121228|39229_1  [L=641]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (641 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       425  (0.103608); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.15s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2917.41
//
Query:       MMETSP1061-20121228|39230_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.26
# Mc/sec: 3157.59
//
Query:       MMETSP1061-20121228|39236_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.018   12.3   0.0      0.039   11.2   0.0    1.5  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   9.5e-06     0.039      95     126 ..     350     381 ..     334     395 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 9.5e-06
    TIGR03724  95 llkevGelvgklHkagivhgDlttsNiivkdd 126
                  ++++  ++++klH+ g++h D+  +Ni+v+++
  MMETSP1061-20121228|39236_1 350 IATDTLRVLAKLHDLGVTHADFYAHNILVQTT 381
                  566667899*******************9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 2326.92
//
Query:       MMETSP1061-20121228|39255_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 534.24
//
Query:       MMETSP1061-20121228|39247_1  [L=1073]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   6.7e-294  975.0   0.0   2.4e-293  973.2   0.0    1.7  1  TIGR00422 valS: valine--tRNA ligase
   8.8e-108  359.4   0.0     1e-104  349.3   0.0    2.0  1  TIGR00392 ileS: isoleucine--tRNA ligase
    4.6e-41  138.5   6.6    9.4e-24   81.3   0.0    4.5  4  TIGR00395 leuS_arch: leucine--tRNA ligase
    5.3e-31  105.3   1.3    1.9e-10   37.3   0.0    7.1  7  TIGR00396 leuS_bact: leucine--tRNA ligase
    4.5e-21   73.0   0.6    2.5e-07   27.6   0.1    4.6  4  TIGR00398 metG: methionine--tRNA ligase
  ------ inclusion threshold ------
      0.019   11.1   0.0       0.04   10.1   0.0    1.5  1  TIGR00456 argS: arginine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR00422  valS: valine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  973.2   0.0  3.5e-296  2.4e-293       2     862 ..      85    1047 ..      84    1048 .. 0.92

  Alignments for each domain:
  == domain 1    score: 973.2 bits;  conditional E-value: 3.5e-296
    TIGR00422    2 ekkYdpkevekklyekweesgvfkpdedeek.....esfiiviPPPnvTGslHiGHalevslqDiliRykrmkgknvlflpGlDhagiatqvvvEkklkae.gktkedlgreefvekilewkeesgetikeqlkrLGvsldwsrerfTldeelskavkeaFvrlyeeglIyrgkrlvnwdpkletaisdlEv..................eykevkgk.....lyyikyklangsgkdklvvATTRPEtllgdtavaVhPeDerykelvgkkvilPlvnrkipiiaD.eevdkefGtGvvkvtpahDknDyevgkrhklelinildedgklneea.geyqglerfearkkvvedlkeegllvkieplkqnvgtceRsktvvEpllskQWfVkvekLadkaleaaekegeikfvPkrfekeylsWleelkdWcISRQliwghriPvwy..............eketgevvvakeeaeekekt..klgs......keleqdeDVLDTWfsSslwplstlgWpeekkdlkkfyptsllvtgfDIiffWvarmillslaltgqvPfkevlihglvrdeqgrKmSKSlgNvidPldlie.....................................kyGaDalRftlaalvaaGrDinldlkkveaarkFlnKlwnasrfvlmnledk.......keleegeeklsladrwilsklnelikevrealdkyrfaeaakalyeFiWndfcdwyiElvKkelyeeeeeekk...eakstlaivLdkllrllhpfiPflteeiyqklkek.......adsimlasyPeveeelvdekaekefelvkeiikevRnlkaesnialnaklevllkleeaeeeaerlkksaedlkklikleevevvsekeeeeeav..akvvpevevlipvkelenkakelaklqkelekekkekeriekkleneafvkkapkevvekekekl 862 
                   +++Ydp++ve++++++we sg++k d  ++      e+f++viPPPnvTGslH+GH l+ ++ D+l+R++rmkg+ +l++pG+Dhagiatq+vvEk l ++ gk+++dlgreefv+ki+ewk+e+g++i++ql++LG s+dwsrerfT+d+ lskav eaF r++e+gl+yr++rl nw+ +l++aisd+Ev                  + k+ kg+     l +++y+++++   + lvvATTR Et+lgdtava+hPeD ry++l+gk+v++P+ +rkipi+ D   vd+ fGtG+vk+tpahD+nDye+gkrh+le+i il+ dg +n++  +e++g+ r +ar ++ e+l+++gll+ +ep+k+++g c+Rs++++Ep+++ QW+V+ e +a++ ++a+  +ge+k++P + ek+ ++Wl++++dWc+SRQl+wgh+iP+w+                +  + +va++e+ +kek+  k           le+deDVLDTWfsS+l p+s++gWp++++dlk fyptsll+tg DIiffWvarm++++l+lt  +Pf++v++h++vrd++grKmSKSlgNvidPl++i                                      ++G+DalRf l a++++G+Dinld+k+v ++r+F+nK+wn +rf+lm l+d        ++l  ++ k+s  d+++ s+l++ i+ ++ +l +y f +a++a y+   nd+c++y+El+K+ +++ +ee+k    +a+ tl + L++ lr lhp++Pf+tee++q+l+ +       + simla++P+v+e++ dek+e+++ l ++i+++ R+l++++nia+++  +  +k++++  +a++ +++a+d+ +l   ++v+++  + e++ +v  + v++++ vl+++k++ + ++e+ +l+k+l k k  +++ ekk++ +++++++p+  ++++ ekl
  MMETSP1061-20121228|39247_1   85 ADAYDPEAVEAAWQDWWEASGFYKGDPAAAMgrpedEKFVMVIPPPNVTGSLHLGHGLTAAVEDTLTRWHRMKGHATLYVPGTDHAGIATQSVVEKMLMKNeGKNRHDLGREEFVKKIWEWKNEYGNRITSQLRHLGSSVDWSRERFTMDDMLSKAVVEAFNRFHEKGLLYRANRLGNWSCALKSAISDIEVdhidlegrtfmevkthkgNSKDPKGRyefgvLTHFAYPVEDSG--EVLVVATTRLETMLGDTAVAIHPEDSRYTHLHGKHVVHPFSGRKIPIVLDpVLVDMSFGTGAVKITPAHDPNDYECGKRHNLEFITILTPDGAINHHGgEEFEGMMRYDARIAIEEALDKKGLLKGKEPNKMRLGLCSRSGDILEPMITPQWYVNCEDMAKRSTDAVR-NGELKIIPAEHEKTWFQWLDNIRDWCVSRQLWWGHQIPAWFattkaegetvskndMANNDRWIVARSEEDAKEKAlaK--LgctedeLVLERDEDVLDTWFSSGLFPFSVMGWPDNTEDLKAFYPTSLLETGLDIIFFWVARMVMMGLELTDTLPFHTVFLHAMVRDKEGRKMSKSLGNVIDPLEVIGgcslqalqdrldggnlpakevarakknnqeefpdgipECGSDALRFGLLAYTVQGKDINLDVKRVVGYRNFCNKMWNSTRFALMYLKDFqptptllDDL-MSSGKMSIRDKFMISRLMKGIEGIDTNLTDYTFGNAQQAGYQLWLNDMCNVYLELIKPVVQSSDEEKKDarwAAQATLWVALETQLRGLHPMMPFITEELWQRLPGRgtlgeteKPSIMLAEFPVVNESYKDEKSEESMTLTLDIVQACRSLRSSYNIAPKNLTHFFIKMTDE-GQADAARAQADDIMTLGSGSQVDINPPDAEIPGTVgtMVVNDSLTVLVDLKGMVDFKTEIGRLNKNLGKAKGPMQQLEKKIAAHGYQENVPEDLKKANDEKL 1047
                   579*********************99887765555577***********************************************************99888******************************************************************************************7777777766644443332222221123333777777777755..79************************************************778********************************************9678******************************************************************9.7******************************************99999999987655666778887777777776443..244766579*****************************************************************************************************************************************************************************************9877887664333.35678999***********************************88**************99888555432227999*****************************99999998888********************************************9999999999888.79999********************99999666551156788899999*********************************************999998876 PP

>> TIGR00392  ileS: isoleucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  349.3   0.0  1.5e-107    1e-104       4     843 ..      86     935 ..      83     951 .. 0.89

  Alignments for each domain:
  == domain 1    score: 349.3 bits;  conditional E-value: 1.5e-107
    TIGR00392   4 ekanlskkeekilkkweekdifekvkkk...kedkkefvlhdGPPyanGeihlghalnkilKDiilryktmqGfkverkpGWDtHGLPiElkvekklgiekkeeiesleveefrekcrefalkaieeqkeqfqrlgvlvDfekpYltldkeyeesvlellkelaekgllkrdlkvvywspeletaLaeaEveykeykdvkdpsiyvkfkvkkeekteakvklslliWTtTPWTLpsNlaiavnpdleYalveleskeevlilakkllekllkkageedleiikkvkgsdlegleyehplsekkeqleevafvvlggdhVttedGtGivHtAPghGeeDyevgkkygleevllpvdekgvyteevadlkgrfvkdadkdvlkankaiiekLkeknlllkaekikHsyPhcwRtkkPviyrateqwFikvkeikeelleei..kkvkwvpekgekRlkkmlenrkdWciSRqRyWGvPipvwvaekteelivvgsieeleekiekkgidawiedlhkdlldkitlkskeggeykreedvlDvWfdSGsspyavleyklenekkkevfpadlilEGsDQtrGWFyssllisvalsdkapykkvithGfvldekGrKMSKslgNvvdpekvik.....................................kyGaDvlRlyvass.dpaedlkfseeilkevaekllkilnntlrFlllyanLdkfkp....eekslkveklkelDrwilsklnslveeveealekyeflkvlraledfvseeLsnwYlriskdrlya.ekkdedkr.aaqttlyeiletlvkllapilpflaeeiyqnlkeek.....keesvhlnefpevdeeavdealeasmklvkeiveavlalrdkvnkklrqp 843
                    ++ + +e+  ++ we + +++   +    + + ++fv++  PP  +G++hlgh l  ++ D+++r+++m+G+++ ++pG D  G+     vek l +++ ++ ++l  eef +k  e   ++ ++ + q+++lg  vD++ +  t+d    ++v+e++++ +ekgll+r ++  +ws +l++a+++ Ev++ +    + ++ +++ k  k ++++             P          v   + Y + ++    evl++a+ +le++l ++++  +   + ++ ++l+g +  hp+s +k       ++vl    V +  GtG+v + P+h  +Dye gk+++l e ++ +  +g  +++  +      +++++  ++a  ai e+L++k+ll  +e  k + + c R+ + +    t+qw+++ +++ ++  +++   + k +p++ ek   ++l n +dWc+SRq  WG  ip w a    e  +v+  + +++   ++ +  + ed +++ l k+  +++    ++r edvlD Wf SG  p +v+  + ++e+ k+ +p  l+  G+D    W     +++  l+d+ p+++v  h +v d++GrKMSKslgNv+dp +vi                                      + G+D+lR+ ++      +d++++ + +   ++ + + ++n+ rF+l  + L++f+p     ++ ++  k++  D++++s+l + +e ++++l +y f ++ +a  +   +++ n Yl+++k  + + +++++d+r aaq+tl  +let ++ l p++pf++ee++q+l++       ++ s+ l+efp v+e++ de+ e+sm+l+ +iv+a+++lr++ n++ +++
  MMETSP1061-20121228|39247_1  86 DAYDPEAVEAAWQDWWEASGFYKGDPAAamgRPEDEKFVMVIPPPNVTGSLHLGHGLTAAVEDTLTRWHRMKGHATLYVPGTDHAGIATQSVVEKMLMKNEGKNRHDLGREEFVKKIWEWKNEYGNRITSQLRHLGSSVDWSRERFTMDDMLSKAVVEAFNRFHEKGLLYRANRLGNWSCALKSAISDIEVDHID---LEGRT-FMEVKTHKGNSKD-------------P---KGRYEFGVLTHFAYPVEDSG---EVLVVATTRLETMLGDTAV--AIHPEDSRYTHLHGKHVVHPFSGRKI------PIVLDPVLVDMSFGTGAVKITPAHDPNDYECGKRHNL-EFITILTPDGAINHHGGE------EFEGMMRYDARIAIEEALDKKGLLKGKEPNKMRLGLCSRSGDILEPMITPQWYVNCEDMAKRSTDAVrnGELKIIPAEHEKTWFQWLDNIRDWCVSRQLWWGHQIPAWFATTKAEGETVSKNDMANN--DRWIVARSEEDAKEKALAKLGCTED-ELVLERDEDVLDTWFSSGLFPFSVMGWPDNTEDLKAFYPTSLLETGLDIIFFWVARMVMMGLELTDTLPFHTVFLHAMVRDKEGRKMSKSLGNVIDPLEVIGgcslqalqdrldggnlpakevarakknnqeefpdgipECGSDALRFGLLAYtVQGKDINLDVKRVVGYRN-FCNKMWNSTRFAL--MYLKDFQPtptlLDDLMSSGKMSIRDKFMISRLMKGIEGIDTNLTDYTFGNAQQAGYQLWLNDMCNVYLELIKPVVQSsDEEKKDARwAAQATLWVALETQLRGLHPMMPFITEELWQRLPGRGtlgetEKPSIMLAEFPVVNESYKDEKSEESMTLTLDIVQACRSLRSSYNIAPKNL 935
                  567888899999999999****976555344667789*******************************************************************999999**********************************************************************************877...33333.3344444433333.............2...35567788999***988888...9**************9997..88999999****************99......99999999*****************************.577778888844444333......45666666666777789***********************99777778************9999976116799************************************998665555544444443..4555555566666677777666665.489*************************************************************************************************************************************************7766648899*****999999887.8888999******..99*****95555567788889999**************************************************9986155677889**********************************96689988899**************************************999876654 PP

>> TIGR00395  leuS_arch: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.3   0.0   1.4e-26   9.4e-24       2     234 ..      92     344 ..      91     351 .. 0.88
   2 !   10.7   0.0   2.9e-05      0.02     273     317 ..     349     394 ..     344     405 .. 0.88
   3 !   18.1   0.6   1.7e-07   0.00011     394     501 ..     419     527 ..     410     674 .. 0.63
   4 !   28.7   0.0     1e-10   7.1e-08     658     842 ..     743     953 ..     697     969 .. 0.71

  Alignments for each domain:
  == domain 1    score: 81.3 bits;  conditional E-value: 1.4e-26
    TIGR00395   2 eiekkyqkrWeeekifead......pddrekffltvayPylnGvlhaGhlrtftivevvarfermkgknvLfplgfhvtGtPilglaekikrrdektikvytevhavPkeellkladpekiveyfsreaesalkslGysidWrrefkttdevydrfieWqlrkLkelGlikkGehpvrycpkdenpvedh..dllsGegvtiveyilikfkledga...................lylvaatlrPetvyGvtnvfvnPei 234
                  ++e  +q+ We    ++ d        + ekf++ ++ P + G lh Gh+ t ++ +   r++rmkg+  L+  g   +G+   ++ ek+  ++e      ++ h++ +ee++k      + + + +++ s+l++lG s+dW re  t d++ ++ +   +++++e+Gl+ + ++  +++   + ++ d   d    eg t  e  + k + +d +                    +lv+at r et+ G t+v ++Pe 
  MMETSP1061-20121228|39247_1  92 AVEAAWQDWWEASGFYKGDpaaamgRPEDEKFVMVIPPPNVTGSLHLGHGLTAAVEDTLTRWHRMKGHATLYVPGTDHAGIATQSVVEKMLMKNE-----GKNRHDLGREEFVKK--IWEWKNEYGNRITSQLRHLGSSVDWSRERFTMDDMLSKAVVEAFNRFHEKGLLYRANRLGNWSCALKSAISDIevDHIDLEGRTFMEVKTHKGNSKDPKgryefgvlthfaypvedsgEVLVVATTRLETMLGDTAVAIHPED 344
                  6899***************88887756779*****************************************988877777777777777766666.....4789*******9984..4567777788999*********************************************************99622667778888887777777777776*******************99*********************74 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 2.9e-05
    TIGR00395 273 qligkkvkaPvvgkevpi.LPaefvdaekatGvvlsvPahaPadyi 317
                  +l gk+v  P  g+++pi L   +vd   +tG v   Pah P+dy 
  MMETSP1061-20121228|39247_1 349 HLHGKHVVHPFSGRKIPIvLDPVLVDMSFGTGAVKITPAHDPNDYE 394
                  67899************8456789********************95 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 1.7e-07
    TIGR00395 394 ldykGikveeakekvkedlidkGladvyyefse.kk.vicrcGdkCvvkvledqWflkysdeeWkekalkclekmrlipeevkeafeekidWlkdkavarrkGLGtrlP.w 501
                   +++G+   +a+  ++e l +kGl +   e+   +  + +r+G + +  ++  qW+++  d + +        ++++ip e  +++ + +d ++d+ v+r+   G ++P w
  MMETSP1061-20121228|39247_1 419 EEFEGMMRYDARIAIEEALDKKGLLKGK-EPNKmRLgLCSRSG-DILEPMITPQWYVNCEDMAKRSTDAVRNGELKIIPAEHEKTWFQWLDNIRDWCVSRQLWWGHQIPaW 527
                  5799999999999**********97654.44330431455666.577889********9999888777777789*********************************9954 PP

  == domain 4    score: 28.7 bits;  conditional E-value: 1e-10
    TIGR00395 658 dfkeseveaakkrlerlkefaeeiakksdlevgeelsfldrwllsrlnkaikevkealenlelrkavkaalfelkkd.vdyyrr.......rsgenvkd.......vlaevleaiikLlaPfaPhlaeelyeev.Gkeg.......fvseakfPevseeavdkeveka....eeylrnlvrdikeiakiaaskpkkvylltsedWkvevlkv 842
                  +f ++  ++++  l  lk+f    +   dl  + ++s+ d++++srl k i+ ++ +l  + + +a +a++    +d  + y++        s+e+ kd        l   le++++ l P++P+++eel++++ G+ +       ++ +a+fP v+e+  d++ e++    ++++++  r+++ + +ia ++  + ++ ++++ + ++++ 
  MMETSP1061-20121228|39247_1 743 NFCNKMWNSTRFALMYLKDFQPTPTLLDDLMSSGKMSIRDKFMISRLMKGIEGIDTNLTDYTFGNAQQAGYQLWLNDmCNVYLElikpvvqSSDEEKKDarwaaqaTLWVALETQLRGLHPMMPFITEELWQRLpGRGTlgetekpSIMLAEFPVVNESYKDEKSEESmtltLDIVQA-CRSLRSSYNIAPKNLTHFFIKMTDEGQADAARA 953
                  3333444556666777777777777777788888********************************998877666662578886222222245556666999999889999*********************9976543222233378999***998887776666551111555554.588999999999999999999999999888775 PP

>> TIGR00396  leuS_bact: leucine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.3   0.0   2.8e-13   1.9e-10       1     172 [.      88     283 ..      88     293 .. 0.76
   2 !    4.2   0.0    0.0028       1.9     228     262 ..     310     344 ..     304     350 .. 0.89
   3 !   27.6   0.0   2.4e-10   1.6e-07     302     418 ..     351     458 ..     343     468 .. 0.82
   4 !   11.4   0.9     2e-05     0.013     410     432 ..     508     530 ..     473     592 .. 0.77
   5 !    5.2   0.0    0.0015         1     604     620 ..     656     672 ..     646     680 .. 0.87
   6 !    9.2   0.0   8.7e-05     0.059     614     761 ..     703     879 ..     689     916 .. 0.70
   7 ?   -2.3   0.0      0.26   1.8e+02     172     195 ..     921     944 ..     908     948 .. 0.88

  Alignments for each domain:
  == domain 1    score: 37.3 bits;  conditional E-value: 2.8e-13
    TIGR00396   1 ykleeieekwqqkwkekkvkkveed.....sekkkyYiLsmfPYPsgalHlGHvrnYtitDvlsRykrlkgynvlhPiGfDaFGlPa....enaaierg.taPa............kwteeniakmkkqlqalgfsydwdrelattdpeYykftqwiFlelfekgLaykkeaevnwcpedktvLaneevi..dsdG 172
                  y+ e++e  wq+ w+    +k   +      e +k+ ++   P   g lHlGH  + ++ D l+R++r+kg+  l   G D  G+      e++ ++++ ++ +            +w +e  +++ +ql++lg s dw+re  t+d+   k     F  ++ekgL y+ +   nw  ++k  + + ev   d +G
  MMETSP1061-20121228|39247_1  88 YDPEAVEAAWQDWWEASGFYKGDPAaamgrPEDEKFVMVIPPPNVTGSLHLGHGLTAAVEDTLTRWHRMKGHATLYVPGTDHAGIATqsvvEKMLMKNEgKNRHdlgreefvkkiwEWKNEYGNRITSQLRHLGSSVDWSRERFTMDDMLSKAVVEAFNRFHEKGLLYRANRLGNWSCALKSAISDIEVDhiDLEG 283
                  6788999*****999887776544433333556666666566667889************************************975222255555543122211122222222224666677999***************************************************9999999888884335555 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0028
    TIGR00396 228 eleFkiedekekiavfttrpdtlfgvtylalaaeh 262
                  ++ + +ed+ e + v ttr +t+ g t +a+ +e+
  MMETSP1061-20121228|39247_1 310 HFAYPVEDSGEVLVVATTRLETMLGDTAVAIHPED 344
                  56789*************************99886 PP

  == domain 3    score: 27.6 bits;  conditional E-value: 2.4e-10
    TIGR00396 302 tglkainPltkekiPiyvanyvl.aeYGtgavmgvpahderDfeFakkyklkikevikkaekdlkeealteegvlvnsgefsglkseeakekiikllekekkgkkkvnYklrDWlvsR 418
                   g + ++P+++ kiPi + +  + +++Gtgav   pahd +D+e  k+++l+ +++++++  +         + +   +ef+g+    a+ +i + l k+++ k k   k+r  l sR
  MMETSP1061-20121228|39247_1 351 HGKHVVHPFSGRKIPIVLDPVLVdMSFGTGAVKITPAHDPNDYECGKRHNLEFITILTPD-GA---------INHHGGEEFEGMMRYDARIAIEEALDKKGLLKGKEPNKMRLGLCSR 458
                  567789**********9998765489***************************9999954.22.........3455568899999999999999999999888877777777666666 PP

  == domain 4    score: 11.4 bits;  conditional E-value: 2e-05
    TIGR00396 410 klrDWlvsRqRYWGePiPiihle 432
                   +rDW vsRq +WG  iP  +  
  MMETSP1061-20121228|39247_1 508 NIRDWCVSRQLWWGHQIPAWFAT 530
                  69****************87764 PP

  == domain 5    score: 5.2 bits;  conditional E-value: 0.0015
    TIGR00396 604 ekmskskkngidPqeiv 620
                   kmsks +n+idP e++
  MMETSP1061-20121228|39247_1 656 RKMSKSLGNVIDPLEVI 672
                  7*************998 PP

  == domain 6    score: 9.2 bits;  conditional E-value: 8.7e-05
    TIGR00396 614 idPqeivkkyGaDalRlyilFasPieksleWdesgleGaeRfldrvynlvkeilsekea........ktelkeealeeaekelrrevhkalkkvtedlekke...........slntviselmkllnallkakk..........eelllealkalvtvlspiaPhlaeelaeklgee 761
                   +  + + + G+DalR  +l  +   k+++ d + + G + f ++++n +   l   +         ++ +++ +++  +k +++++ k ++ +  +l + +            ln +   +++l+  +++ ++          ++ l  al++ ++ l+p++P+++eel+++l  +
  MMETSP1061-20121228|39247_1 703 EEFPDGIPECGSDALRFGLLAYTVQGKDINLDVKRVVGYRNFCNKMWNSTRFALMYLKDfqptptllDDLMSSGKMSIRDKFMISRLMKGIEGIDTNLTDYTfgnaqqagyqlWLNDMCNVYLELIKPVVQSSDeekkdarwaaQATLWVALETQLRGLHPMMPFITEELWQRLPGR 879
                  4445567889**********9**************************987654443333344555564555555555566666666666666555544433322233344433566666777777766665555677888776556777789999999**************99744 PP

  == domain 7    score: -2.3 bits;  conditional E-value: 0.26
    TIGR00396 172 GrseRgdasvekkelkqwvlkitk 195
                   rs R+++++  k+l  +++k+t+
  MMETSP1061-20121228|39247_1 921 CRSLRSSYNIAPKNLTHFFIKMTD 944
                  5899******************97 PP

>> TIGR00398  metG: methionine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   3.6e-10   2.5e-07      10      58 ..     132     180 ..     125     280 .. 0.84
   2 !   12.6   0.0   1.3e-05    0.0087     179     242 ..     466     526 ..     435     532 .. 0.77
   3 !   15.7   0.0   1.4e-06   0.00099     307     342 ..     636     672 ..     596     680 .. 0.75
   4 !   10.9   0.0   4.3e-05     0.029     344     501 ..     711     876 ..     701     887 .. 0.80

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 3.6e-10
    TIGR00398  10 angkpHlGhllttilaDvlarykrlrGeevlfvtgtDehGtkielkAes 58 
                  + g++HlGh lt  + D+l r++r++G+ +l+v gtD  G ++++  e+
  MMETSP1061-20121228|39247_1 132 VTGSLHLGHGLTAAVEDTLTRWHRMKGHATLYVPGTDHAGIATQSVVEK 180
                  6799************************************999976554 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 1.3e-05
    TIGR00398 179 keeehyFfrlskfekkleelikknpeskklasevknvlenflkegLkdlaitRdlvewGipvPk 242
                    + +++++ +++ k   + +++ + ++ +a++ +++  ++l++ ++d++++R+l  wG ++P 
  MMETSP1061-20121228|39247_1 466 MITPQWYVNCEDMAKRSTDAVRNGELKIIPAEH-EKTWFQWLDN-IRDWCVSRQLW-WGHQIPA 526
                  556678999999999999999966556666555.566777***9.***********.******6 PP

  == domain 3    score: 15.7 bits;  conditional E-value: 1.4e-06
    TIGR00398 307 lelklpkqlvahgyltve.gkkmSkSkgnvvdpedll 342
                  ++   ++ ++ h ++  + g+kmSkS+gnv+dp +++
  MMETSP1061-20121228|39247_1 636 TDTLPFHTVFLHAMVRDKeGRKMSKSLGNVIDPLEVI 672
                  33444688999***99766**************9977 PP

  == domain 4    score: 10.9 bits;  conditional E-value: 4.3e-05
    TIGR00398 344 rygadilRYyllkevplekDldfsledfvervNaelvnklgNllnRtlgfikkyfegklksvkea......seedekllkkieealekidealekfefkkaleeilk..lvsegnklideekPwelakeeekeke.llavlle..lirvlsillkpilpklsekilkll 501
                  + g+d+lR+ ll+++ ++kD+++ +++ v  +  +  nk+ N   R + +  k f+      +        s +d+ +++ + + +e id++l  + f +a ++  +  l +  n +++  kP +  ++eek+++   a ++   ++++    l+p++p ++e++ ++l
  MMETSP1061-20121228|39247_1 711 ECGSDALRFGLLAYTVQGKDINLDVKRVVGYR--NFCNKMWNS-TRFALMYLKDFQPTPTLLDDLmssgkmSIRDKFMISRLMKGIEGIDTNLTDYTFGNAQQAGYQlwLNDMCNVYLELIKPVVQSSDEEKKDArWAAQATLwvALETQLRGLHPMMPFITEELWQRL 876
                  5799*************************999..689***997.58999999998854333333355566588999999********************999987661157899************9999554431333333333777777779999999999888776 PP

>> TIGR00456  argS: arginine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   5.9e-05      0.04     120     152 ..     129     161 ..     116     209 .. 0.91

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 5.9e-05
    TIGR00456 120 SaNpakplHvGHlRsaiiGdslarileflGydv 152
                   +N+++ lH+GH   a + d+l r  ++ G+ +
  MMETSP1061-20121228|39247_1 129 PPNVTGSLHLGHGLTAAVEDTLTRWHRMKGHAT 161
                  59****************************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.86u 0.17s 00:00:01.03 Elapsed: 00:00:00.62
# Mc/sec: 2284.26
//
Query:       MMETSP1061-20121228|39264_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-08   31.2   0.0    1.7e-08   31.0   0.0    1.0  1  TIGR00691 spoT_relA: RelA/SpoT family protein


Domain annotation for each model (and alignments):
>> TIGR00691  spoT_relA: RelA/SpoT family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   4.3e-12   1.7e-08     133     176 ..      20      63 ..      13      74 .. 0.89

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 4.3e-12
    TIGR00691 133 iaketleiyaplAeRlGissiKteLedlsFkvlypkeYeeikel 176
                   a++ l++ya l e lG++++ t+Le  +F++lyp +Y     l
  MMETSP1061-20121228|39264_1  20 AARDSLKVYANLSEQLGLHRLQTQLEARAFRILYPRQYSASSTL 63 
                  69************************************976665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 479.96
//
Query:       MMETSP1061-20121228|39268_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-13   49.1   3.6    7.2e-08   30.0   0.1    2.3  2  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    4.7e-08   29.7   1.4    4.9e-06   23.0   0.1    2.1  2  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.1   3.5e-11   7.2e-08       2      35 ..       7      40 ..       6      49 .. 0.91
   2 !   19.9   0.4   4.1e-08   8.5e-05      36      76 ..      71     112 ..      63     156 .. 0.71

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 3.5e-11
    TIGR02349  2 YYeiLgvskdAseeeikkAYrklakkyHPDrnkg 35
                 +Ye+Lgv++dA+ e+ik+++ +la+  HPD++ +
  MMETSP1061-20121228|39268_1  7 HYEVLGVPQDATYEQIKESFHRLARAKHPDKQTN 40
                 7*****************************9984 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 4.1e-08
    TIGR02349  36 ekeaeekfkeineAyevLsdeekraqYDq.fghagleggagg 76 
                   +++ + f++i++A ++L d+e r++YD  + h++l++++ +
  MMETSP1061-20121228|39268_1  71 AENSAAEFRRIQQAWQILRDPEERKAYDSdLFHKDLQEENRR 112
                  4567789********************973445555554333 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.1   2.4e-09   4.9e-06       1      36 [.       4      39 ..       4      48 .. 0.91
   2 !    6.0   0.1   0.00033      0.67      36      65 ..      70      99 ..      63     130 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.4e-09
    TIGR03835  1 krDyyevLgidrDadeqeikkafrkLakkyhPDrnk 36
                 +r +yevLg+ +Da  ++ik +f +La+  hPD+  
  MMETSP1061-20121228|39268_1  4 RRSHYEVLGVPQDATYEQIKESFHRLARAKHPDKQT 39
                 5899*****************************864 PP

  == domain 2    score: 6.0 bits;  conditional E-value: 0.00033
    TIGR03835 36 kaadaakifaeineandvLsnPkkraryDk 65
                 +a ++a  f+ i  a ++L +P+ r+ yD 
  MMETSP1061-20121228|39268_1 70 QAENSAAEFRRIQQAWQILRDPEERKAYDS 99
                 56788889********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 997.84
//
Query:       MMETSP1061-20121228|39280_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|39283_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.40
# Mc/sec: 2045.83
//
Query:       MMETSP1061-20121228|39294_1  [L=734]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (734 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.34
# Mc/sec: 2849.41
//
Query:       MMETSP1061-20121228|39320_1  [L=657]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (657 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.27
# Mc/sec: 3211.73
//
Query:       MMETSP1061-20121228|39337_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 455.36
//
Query:       MMETSP1061-20121228|39342_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 493.22
//
Query:       MMETSP1061-20121228|39343_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|39349_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 554.35
//
Query:       MMETSP1061-20121228|39352_1  [L=400]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-17   60.3   0.0    2.4e-17   59.9   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      1e-05   23.0   0.0    3.4e-05   21.2   0.0    1.8  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32
     0.0012   15.4   0.0     0.0019   14.7   0.0    1.3  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   1.8e-20   2.4e-17      85     186 ..     225     317 ..     221     368 .. 0.86

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 1.8e-20
    TIGR03903  85 mlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                    qvL +l   h++ ++hRD+kP ni++ ++++    k+ DFGi++L  + +        ++t v+G+  + +Pe LR  p   +sD++++GL++le   G+
  MMETSP1061-20121228|39352_1 225 AYQVLTGLEYLHSQRMIHRDIKPGNILLNNRGE---VKLCDFGISSLYGEDDS------SLQTTVVGTSRFMSPERLRAKPYGKASDIWSFGLVLLELWKGE 317
                  57**************************98885...799*******9865444......566779********************************99998 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.0   2.5e-08   3.4e-05      44     138 ..     152     268 ..     140     281 .. 0.81

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 2.5e-08
    TIGR03724  44 trkEarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.....................ellkevGelvgklHkagivhgDlttsNiivk.ddklyliDfGLgkk 138
                    kE r+ls++++  +   +  ++++++  +vmey+++  l++  ++++                      +++++v + +  lH+++++h D+ + Ni+++  +++ l DfG+++ 
  MMETSP1061-20121228|39352_1 152 LLKELRMLSQLQSIALVGFHGAFLEDDAVVLVMEYMDEGSLEQWRKNSNCgndlnpsqmkslqmkrepffaSIAYQVLTGLEYLHSQRMIHRDIKPGNILLNnRGEVKLCDFGISSL 268
                  56788888888888888888888888889999999999999888877666777888888888888887777777788888899******************6267899******975 PP

>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.4e-06    0.0019     273     306 ..     236     269 ..     178     284 .. 0.66

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.4e-06
    TIGR01982 273 lrdgfFHaDlHpGNilvakdgkiialDfGivgrl 306
                    + + H D+ pGNil+++ g++ + DfGi +  
  MMETSP1061-20121228|39352_1 236 HSQRMIHRDIKPGNILLNNRGEVKLCDFGISSLY 269
                  346789***********************96544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (400 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 1820.54
//
Query:       MMETSP1061-20121228|39385_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 539.96
//
Query:       MMETSP1061-20121228|39387_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      135  (0.0329108); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|39407_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 508.16
//
Query:       MMETSP1061-20121228|39411_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 633.55
//
Query:       MMETSP1061-20121228|39401_1  [L=788]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-82  276.1   6.4    2.2e-78  262.0   1.2    2.2  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    4.6e-37  125.5   0.1    5.2e-13   46.7   0.0    4.4  4  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.5e-35  121.0   0.5    1.3e-10   38.6   0.0    4.1  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.3e-34  116.4   3.2    2.4e-10   38.0   0.0    4.5  4  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      1e-32  111.1   0.2    5.9e-10   36.8   0.0    4.6  4  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.2e-32  111.2   4.1    6.9e-16   56.2   0.1    4.3  3  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
      2e-32  110.3   1.8    9.2e-20   69.0   0.1    3.4  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.8e-31  106.6   1.7    9.3e-10   35.5   0.1    4.2  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    3.3e-30  102.8   0.0    3.7e-09   33.2   0.0    4.3  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      5e-30  102.6   0.1    8.7e-12   43.0   0.0    4.3  4  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.4e-28   97.9   1.1    2.2e-14   51.5   0.1    3.6  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.3e-28   97.1   0.5    5.6e-11   40.2   0.0    4.3  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
      3e-28   96.7   2.0    2.1e-11   41.6   0.0    4.2  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    7.1e-28   95.7   0.1    1.8e-08   32.2   0.0    4.5  4  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    1.2e-27   94.5   0.0      2e-08   31.0   0.0    4.2  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
      6e-27   92.6   0.2    1.7e-09   35.5   0.0    4.4  4  TIGR00960 3a0501s02: type II secretory pathway family protein
      3e-26   90.1   0.2    4.9e-12   43.6   0.1    4.2  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    4.8e-26   89.6   0.3    3.2e-08   31.2   0.0    4.0  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.6e-25   87.8   1.6      2e-07   28.5   0.0    4.4  4  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.6e-25   86.7   0.2    2.6e-07   28.3   0.1    4.4  4  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    6.7e-25   85.6   0.1    5.6e-11   39.9   0.0    4.2  4  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.7e-24   84.4   0.5    1.1e-09   36.0   0.2    4.2  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    2.9e-24   83.7   0.7    8.3e-10   36.4   0.0    4.3  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    3.3e-24   83.6   0.1    2.1e-07   28.3   0.0    4.5  4  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    3.9e-24   82.9   0.0    6.3e-10   36.0   0.0    4.2  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    6.6e-24   82.7   0.1    1.5e-12   45.5   0.0    3.8  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.9e-23   80.9   0.0    2.7e-11   41.1   0.0    4.3  4  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    3.3e-23   80.1   0.0    1.4e-09   35.3   0.0    4.3  4  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    4.9e-23   79.0   0.0    5.9e-07   25.9   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.4e-22   78.3   0.0    7.3e-11   39.9   0.0    3.8  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.6e-22   78.1   0.0    1.8e-07   28.5   0.0    4.3  4  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    2.8e-22   76.9   0.0    7.9e-08   29.1   0.0    4.3  4  TIGR00955 3a01204: pigment precursor permease
    1.8e-21   74.5   0.1      1e-05   22.9   0.0    4.6  4  TIGR01978 sufC: FeS assembly ATPase SufC
    2.9e-21   74.0   1.2    2.8e-09   34.7   0.1    5.1  4  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    4.1e-21   73.2   0.1      1e-08   32.4   0.0    4.1  4  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.2e-19   67.2   0.0    1.4e-05   21.6   0.0    4.1  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      1e-18   65.4   0.1    5.1e-08   30.5   0.0    4.3  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    2.7e-18   64.0   0.0    1.5e-06   25.6   0.0    4.4  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    4.1e-18   62.8   0.0    3.9e-06   23.2   0.0    3.3  3  TIGR00958 3a01208: antigen peptide transporter 2
      6e-18   62.6   0.1    1.9e-05   21.3   0.0    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    3.2e-17   60.1   0.0     0.0001   18.7   0.0    4.2  4  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    7.8e-17   58.7   2.9    6.4e-08   29.3   0.0    4.8  5  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    1.1e-16   58.1   0.0    1.5e-07   27.9   0.0    3.9  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
    1.4e-16   58.0   0.0    6.4e-05   19.4   0.0    4.1  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
      1e-15   55.4   0.1    6.5e-06   23.2   0.0    4.0  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    1.5e-15   54.4   0.0      8e-06   22.4   0.0    4.1  4  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.5e-15   54.8   0.6    1.3e-06   25.5   0.0    3.4  3  TIGR01288 nodI: nodulation ABC transporter NodI
      5e-13   46.7   0.1    5.5e-06   23.6   0.0    4.2  4  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    1.9e-11   41.8   0.0     0.0079   13.5   0.0    4.2  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    2.5e-11   40.7   0.2    0.00048   16.7   0.0    4.1  4  TIGR01192 chvA: glucan exporter ATP-binding protein
      3e-10   36.0   1.6    1.1e-05   20.9   0.1    3.7  3  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      2e-09   33.5   0.7     0.0034   12.8   0.0    4.0  4  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.1e-08   32.3   0.5    4.5e-05   20.4   0.0    3.7  3  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.2e-06   25.2   0.1     0.0032   13.9   0.0    3.2  3  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.5e-06   25.9   0.4      0.015   13.0   0.0    2.9  2  TIGR00231 small_GTP: small GTP-binding protein domain
      7e-06   23.1   0.2      0.047   10.5   0.0    2.4  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    8.7e-06   21.2   0.2      0.014   10.6   0.0    2.9  3  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.5e-05   19.9   0.0     0.0039   11.8   0.0    3.1  4  TIGR01257 rim_protein: rim ABC transporter
    3.2e-05   20.2   0.5      0.024   10.7   0.0    2.8  3  TIGR00929 VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
    4.3e-05   21.0   0.1       0.13    9.6   0.1    2.8  2  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
    0.00033   18.5   4.1    0.00033   18.5   2.9    3.8  3  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0013   15.8   0.0      0.063   10.3   0.0    2.3  2  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
     0.0015   14.7   0.1       0.39    6.8   0.0    2.1  2  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
     0.0038   15.3   0.1        1.6    6.8   0.0    2.6  2  TIGR02528 EutP: ethanolamine utilization protein, EutP
  ------ inclusion threshold ------
      0.015   12.4   5.6       0.18    8.9   0.0    3.2  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
      0.074   10.2   9.3       0.23    8.6   0.0    3.1  2  TIGR00436 era: GTP-binding protein Era


Domain annotation for each model (and alignments):
>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.1   0.3   1.1e-05    0.0007     277     374 ..     159     256 ..     134     305 .. 0.69
   2 !  262.0   1.2   3.5e-80   2.2e-78      93     540 ..     315     775 ..     283     785 .. 0.84

  Alignments for each domain:
  == domain 1    score: 16.1 bits;  conditional E-value: 1.1e-05
    TIGR03719 277 sspkarqakskarlaryeelaseesekkeetaeivippgerlGdkvievenlskafgd.klliddlsfklpkggivGviGpnGaGkstlfklitgkekp 374
                   + k rq  +k+r    ++++++e ++k+  + +++p+++   ++ ++v+ ++ + ++   l+d+ ++k   +    +iG nG+Gk+tl++ i++ e+ 
  MMETSP1061-20121228|39401_1 159 DKRKQRQELEKSRRDLGKQIERQEISTKAGVSAMILPTTK-GKEMDVNVQRITLSLENgTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIANWEDL 256
                  5567777788888888888888888888887777776654.3455567777777765425677777777777777888888888888888877766554 PP

  == domain 2    score: 262.0 bits;  conditional E-value: 3.5e-80
    TIGR03719  93 vaeikealdrfeeisaklaeedadfdklleeqaklqekidaadawdldskleiamdalrlpee..dakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGtvvavthdryfldnvaeWileldrGegipykgnysswleqkekrleqeekeeaarkkalkkeleWvrs.spka.rqakskarlaryeelaseese..kkeetaeivippgerlGdkvievenls...........kafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGetvklayvdqsrda.lddnktvweeisdGldllklgkvevnsrayvgrfnfkGadqqkkvgelsGGernrvhlakllkeggnvllldePtndldvetlraleeallefaGcavvishdrwfldriathilafegdskveffeGnyeeyeedkkkrlGed 540
                    +  e+++  ++   + ae+d++f + le+ +++ e++   +a + +s+    +  l+  ++   + +++lsGG + rval+  ll +Pd+l+ldePtnhld e+v Wle +l++y+ tv+ v hdr fl++v++  +e+   + + y+gny ++++ k+++l+++ +e +a k + ++ +e++++  ++a r +  ++r+++ +++ +e+ e  + e+     ip++e lG  +i +++++           k+ + + l+++++f l +++ + ++G+nG Gk+tl++li+g+ +p +G++ + + +++++  q++++ +d +     +i + l++++ ++ +v  r+++grf+ +Gad  k +  lsGG++ rv +a l  +   +l++de +n l ++++ al +a+++f G  +v+shd++f++  +  i   e ++k+  f+G++++y+ ++ k++ + 
  MMETSP1061-20121228|39401_1 315 NGHEDETVESRKKRLIESAEDDKKFSEDLEKLNNIYERLTLLGADTAQSRATAILSGLQFTDDmqASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSYPHTVITVSHDRGFLNEVCSDTIEFKNKKLTYYRGNYDNFVKLKQEKLKNQMREYEAYKMKRDHMMEFIEKfRANAkRATIVQSRIKAVNKMDAEAPEpvEMETVWRFSIPSSEPLGRPIIAINDVTfdysleqsdgtKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNSGLRIGHFTQHHSErFDLS---LSAIENMLNIFNSAEDQV-IRSFLGRFQIQGADALKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGGLLVVSHDQYFVNATCNEIWIVE-EGKASRFDGTFDDYKSHTAKKTRKR 775
                  444444555555555677899999***********************************987521568****************************************************************************************************9988887777777888765233441566789*********77765511445556899**************9997222222222224445679******************************************************99886415544...455666677777776666.69**************************************************************************************9887.568999********99887776554 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0017      0.11       3      48 ..     205     251 ..     203     301 .. 0.87
   2 !   46.7   0.0   8.4e-15   5.2e-13     128     208 ..     376     453 ..     345     461 .. 0.81
   3 !   24.8   0.0   3.9e-08   2.4e-06       6      61 ..     566     621 ..     561     636 .. 0.85
   4 !   38.8   0.0     2e-12   1.3e-10     113     214 ..     654     753 ..     644     759 .. 0.88

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0017
    TIGR03873   3 rlsrvsvra.ggrlivddvdvtaPaGaltgllGPnGsGkstllrlla 48 
                  +++r+++++ +g  ++d+ d+++      +++G nG Gk+tll+ +a
  MMETSP1061-20121228|39401_1 205 NVQRITLSLeNGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIA 251
                  5667777652467899999************************9887 PP

  == domain 2    score: 46.7 bits;  conditional E-value: 8.4e-15
    TIGR03873 128 ssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvv 208
                  +++    ++ lsGG r rv la +l  eP +l+ldePtnhld++a l l a +r+      tv+   hd  +  +vc + +
  MMETSP1061-20121228|39401_1 376 DDMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSY---PHTVITVSHDRGFLNEVCSDTI 453
                  4566677899********************************************99...78999999**999999987766 PP

  == domain 3    score: 24.8 bits;  conditional E-value: 3.9e-08
    TIGR03873   6 rvsvraggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdla 61 
                    + ++++  +++ ++    + +  +llG nG Gk+tll+l+ G l+p aG+v ++
  MMETSP1061-20121228|39401_1 566 DGTKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  5566777788888888888999999***************************9765 PP

  == domain 4    score: 38.8 bits;  conditional E-value: 2e-12
    TIGR03873 113 edaevvdralarvelssl.adrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGr 214
                  ++++v++  l+r +++   a + +  lsGG++ rv +a    q+P+ll++de  nhl + a  +l++++++    +   +v  hd  +  + c+++ ++++G+
  MMETSP1061-20121228|39401_1 654 AEDQVIRSFLGRFQIQGAdALKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDF---KGGLLVVSHDQYFVNATCNEIWIVEEGK 753
                  455788889999888754277999***************999****************************99...77788889**************999997 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.0     7e-07   4.3e-05     284     369 ..     151     251 ..     147     258 .. 0.72
   2 !   38.6   0.0   2.2e-12   1.3e-10     457     521 ..     384     446 ..     357     453 .. 0.89
   3 !   32.6   0.0   1.4e-10     9e-09     333     392 ..     572     632 ..     504     638 .. 0.84
   4 !   24.4   0.0   4.5e-08   2.8e-06     457     521 ..     678     740 ..     667     749 .. 0.88

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 7e-07
    TIGR02857 284 yHakaegvaaaealvevldaeeqpeaekapltaaass................slelenvsvayegrkpalkevsltvepgelvalvGaSGaGKstllklll 369
                  yH+k+  +   ++ +e+ + + + + ++ + ++ +++                 ++++ ++++ e+ +  l++ +l+++ ++++a++G+ G+GK+tll+ ++
  MMETSP1061-20121228|39401_1 151 YHDKTSSKDKRKQRQELEK-SRRDLGKQIERQEISTKagvsamilpttkgkemDVNVQRITLSLENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIA 251
                  7777777777777777766.2222222222222221123456777777888889**********77667*****************************9876 PP

  == domain 2    score: 38.6 bits;  conditional E-value: 2.2e-12
    TIGR02857 457 agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                  + LSgG r R+aLA  ll + ++l+lDEPt hLD e+   ++++lr+    +tv+ v+H++  ++
  MMETSP1061-20121228|39401_1 384 KSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRS--YPHTVITVSHDRGFLN 446
                  57***********************************9999999999..679********98765 PP

  == domain 3    score: 32.6 bits;  conditional E-value: 1.4e-10
    TIGR02857 333 grkpalkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvnga.elaeldad 392
                  +++  l+++++ ++  +++al+Ga G GK+tll+l++g+++p  G+++vn+   + +++++
  MMETSP1061-20121228|39401_1 572 EAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNSGlRIGHFTQH 632
                  444689*******************************************754266666665 PP

  == domain 4    score: 24.4 bits;  conditional E-value: 4.5e-08
    TIGR02857 457 agLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalae 521
                  + LSgGq+ R++ A + ++  +ll++DE   hL  ++  ++++a++++  g  +l+v+H++  ++
  MMETSP1061-20121228|39401_1 678 RYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGG--LLVVSHDQYFVN 740
                  569********************************************8776..78999*987654 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0   3.4e-05    0.0021       2      38 ..     214     250 ..     213     255 .. 0.91
   2 !   38.0   0.0   3.8e-12   2.4e-10     102     186 ..     359     441 ..     315     444 .. 0.80
   3 !   37.4   0.3     6e-12   3.7e-10       7      54 ..     576     624 ..     571     661 .. 0.81
   4 !   22.3   0.0   2.5e-07   1.5e-05     108     185 ..     659     734 ..     646     738 .. 0.80

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 3.4e-05
    TIGR01166   2 edeaevlkglnlavergevlallGanGaGkstlllhl 38 
                  e++++ l++ +l++   ++ a++G+nG Gk+tll+ +
  MMETSP1061-20121228|39401_1 214 ENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRI 250
                  5788899999************************876 PP

  == domain 2    score: 38.0 bits;  conditional E-value: 3.8e-12
    TIGR01166 102 aeverrvrealaavdi.sgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                  + +++r    l+ ++  ++++  p++ lsgG + rva+a+ + ++pd+l+ldePt  ld + +  l +   +lr   +tv+  +hd
  MMETSP1061-20121228|39401_1 359 DTAQSRATAILSGLQFtDDMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEA---HLRSYPHTVITVSHD 441
                  55666777777777752679999************************************987766665...566677888888888 PP

  == domain 3    score: 37.4 bits;  conditional E-value: 6e-12
    TIGR01166   7 vlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlld.Ge 54 
                   l+++n+ +++++++allGanG Gk+tll+ + G+lrP +G v+++ G 
  MMETSP1061-20121228|39401_1 576 LLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNsGL 624
                  699**************************************99875244 PP

  == domain 4    score: 22.3 bits;  conditional E-value: 2.5e-07
    TIGR01166 108 vrealaavdisglee.rpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisth 185
                  +r  l   +i+g +  +p++ lsgG+k rv+ a     rp++l++de +  l  + ++ l+++++ ++  G  + + +h
  MMETSP1061-20121228|39401_1 659 IRSFLGRFQIQGADAlKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFK--GGLL-VVSH 734
                  556666667776643399*****************9********************999999998875..3333.3345 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0     2e-07   1.3e-05      11      51 ..     217     257 ..     206     282 .. 0.85
   2 !   36.8   0.0   9.5e-12   5.9e-10     112     202 ..     362     451 ..     346     455 .. 0.83
   3 !   24.3   0.1   6.3e-08   3.9e-06       5      59 ..     568     622 ..     565     644 .. 0.78
   4 !   21.4   0.0     5e-07   3.1e-05     111     199 ..     655     741 ..     634     748 .. 0.80

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 2e-07
    TIGR03608  11 keilkklslkiekGelvaivGesGsGKstlLnilgllekkd 51 
                   ++l++ +lk+   + +ai+Ge G GK+tlLn +++ e+ +
  MMETSP1061-20121228|39401_1 217 TSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIANWEDLE 257
                  47899999***************************999865 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 9.5e-12
    TIGR03608 112 ekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpe.vaekadr 202
                  +++ + +l  +++ +  +   i +lsgG + Rvala  ll e+++++ DEPt  LD +   +vl l  +l++  +t+i v Hd   + e +  
  MMETSP1061-20121228|39401_1 362 QSRATAILSGLQFtDDMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLE---AVLWLEAHLRSYPHTVITVSHDRGfLNEVCSD 451
                  556667777777756677889***********************************85...79999999**************8514445555 PP

  == domain 3    score: 24.3 bits;  conditional E-value: 6.3e-08
    TIGR03608   5 skkfkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvileg 59 
                  +kk + + +l+k+++ +++ + +a++G  G GK+tlLn++    ++  g+v+++ 
  MMETSP1061-20121228|39401_1 568 TKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNS 622
                  577888899*****************************76554455556666654 PP

  == domain 4    score: 21.4 bits;  conditional E-value: 5e-07
    TIGR03608 111 kekkkkevlekvgl.ekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek 199
                  +++ + + l ++++  ++  k +  lsgG+k Rv+ a +  + ++l++ DE    L ++  +++++ +++ k     +++v Hd++  ++
  MMETSP1061-20121228|39401_1 655 EDQVIRSFLGRFQIqGADALKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKG---GLLVVSHDQYFVNA 741
                  5566677788888844555677888*************************************99999988864...578999*9986654 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.6   0.0     0.058       3.6      10      37 ..     221     248 ..     215     252 .. 0.79
   2 !   47.6   0.2   4.7e-15   2.9e-13      75     260 ..     337     518 ..     316     540 .. 0.72
   3 !   56.2   0.1   1.1e-17   6.9e-16       9     228 ..     577     781 ..     572     787 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.6 bits;  conditional E-value: 0.058
    TIGR01188  10 dgvnlkveegevfglLGPnGAGKtttik 37 
                  d+ +lk      ++++G nG GKtt+++
  MMETSP1061-20121228|39401_1 221 DQGDLKFAYQRRYAIIGENGVGKTTLLN 248
                  5556777777789************975 PP

  == domain 2    score: 47.6 bits;  conditional E-value: 4.7e-15
    TIGR01188  75 asvdedLtarenlellgelyglpkkeaeeraeellelvelkea.adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladr.vaiidkGkiiaedtpeeLKervgkevveverrdikelkkevsllaaeltesll.eleavevdsdkvkl 260
                  +   edL   +n++   +l  l  ++a++ra+ +l  +++++  +  ++k +sgG r r+ laasl+ +P++l LDEPt  LD +  +++w   ++l++  +t++  +h+    +++++  +   +k      +  ++   ++ +e ++ + r+ +  k +++ + +e++e+ + ++++++  + ++k 
  MMETSP1061-20121228|39401_1 337 KKFSEDLEKLNNIY--ERLTLLGADTAQSRATAILSGLQFTDDmQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLE--AVLWL-EAHLRSYPHTVITVSHDRGFLNEVCSDtIEFKNKKLTYYRGNYDNFV-KLKQEKLKNQMREYEAYKMKRDHM-MEFIEKFRaNAKRATIVQSRIKA 518
                  55566666666654..45566667899************997516689***********************************86..46774.4678999**********999998886505555554445556666654.777777777777777777666644.55555554456666666555554 PP

  == domain 3    score: 56.2 bits;  conditional E-value: 1.1e-17
    TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrepdevRrsigvvpqkas..vdedLtarenlellgelyglpkkeaeeraeellelvelkea.adkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaed.tpeeLKervgkevveverrdik 228
                  ++++n+ +++ + ++lLG nG GKtt+++++ + l+P +G+++v+          +  +ig  +q+ s   d +L+a en+      +++ ++++++ ++  l +++++ a a k+++++sgG++ r++ a+   ++P++l +DE    L   + +a+  li+++++ +  +l+ +h+ + +++ ++++ i+++Gk   +d t ++ K++  k++ + +++++k
  MMETSP1061-20121228|39401_1 577 LQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNS--------GL--RIGHFTQHHSerFDLSLSAIENM------LNIFNSAEDQVIRSFLGRFQIQGAdALKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHL---SMDAVDALIQAIQDFKGGLLVVSHDQYFVNATCNEIWIVEEGKASRFDgTFDDYKSHTAKKTRKRVEESVK 781
                  57899*********************************99998863........33..57777777661256677788876......566778889999*********97636799*****************************77766...5566667777777777899*************************998636789999888888665555544 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.3   0.0    0.0014      0.09      13      47 ..     217     251 ..     205     278 .. 0.82
   2 !   28.6   0.0   3.5e-09   2.1e-07     107     173 ..     364     431 ..     314     446 .. 0.80
   3 !   69.0   0.1   1.5e-21   9.2e-20       5     184 ..     566     734 ..     562     747 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.0014
    TIGR01189  13 rvlleglsfelaaGealvveGpnGiGKttLLRila 47 
                  + ll + ++++a     ++ G+nG+GKttLL  +a
  MMETSP1061-20121228|39401_1 217 TSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIA 251
                  56666667777777778999***********8777 PP

  == domain 2    score: 28.6 bits;  conditional E-value: 3.5e-09
    TIGR01189 107 tveealekvgLs.gledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaH 173
                   +++ l  ++ + +++  p+++Ls G + R+ala  ll +  + +LDEPt  lD e+v  l+++l+++
  MMETSP1061-20121228|39401_1 364 RATAILSGLQFTdDMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSY 431
                  3555555555541577889***************************************9999998875 PP

  == domain 3    score: 69.0 bits;  conditional E-value: 1.5e-21
    TIGR01189   5 elaveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrdelaeellyl.gHldglKaeLsalEnLkfyaallqseqktveealekvgLsgledl.pvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllat 184
                  + + +R+++ ll++++f l     +++ G nG GKttLL ++ G l+p +G+v +n+      r       ++   H++    +Lsa En+  ++ + ++e++ +   l + +++g++ l p+++Ls Gqk R+++a L  ++  l i+DE    l  ++v+ l +++++   +gG+ +++ 
  MMETSP1061-20121228|39401_1 566 DGTKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNSGL----R-----IGHFTqHHSERFDLSLSAIENM--LNIFNSAEDQVIRSFLGRFQIQGADALkPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDF--KGGLLVVSH 734
                  56789***************************************************333....2.....2233304788999********7..45566667789************987548********************************************99986..677766654 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.4   0.0   4.6e-06   0.00029     318     382 ..     186     251 ..     158     259 .. 0.77
   2 !   35.5   0.1   1.5e-11   9.3e-10     470     528 ..     384     440 ..     366     442 .. 0.84
   3 !   31.2   0.0   3.2e-10     2e-08     347     396 ..     572     622 ..     499     645 .. 0.77
   4 !   18.6   0.0     2e-06   0.00012     471     524 ..     679     732 ..     670     736 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.4 bits;  conditional E-value: 4.6e-06
    TIGR02868 318 aeasapaaeaaas.ekptlelrdlsvsypgaeevlkgvsldlepGervavvGasGaGKstLlalla 382
                  ++++++   ++++ +++++++++++ s +++   l++ +l+ +  +r a++G  G+GK+tLl+ +a
  MMETSP1061-20121228|39401_1 186 KAGVSAMILPTTKgKEMDVNVQRITLSLENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIA 251
                  33333333333335799*********************************************9876 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 1.5e-11
    TIGR02868 470 arlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvth 528
                  ++lSGG r R+alA  Ll + ++l+LDEPt hLD e+   l + L++    +tv+ v+h
  MMETSP1061-20121228|39401_1 384 KSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSY--PHTVITVSH 440
                  68*********************************9987777777643..345666666 PP

  == domain 3    score: 31.2 bits;  conditional E-value: 3.2e-10
    TIGR02868 347 aee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldg 396
                  ++e  l+++++ l + +++a++Ga G GK+tLl+l++g l p +G+v++++
  MMETSP1061-20121228|39401_1 572 EAEyLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNS 622
                  334589******************************************985 PP

  == domain 4    score: 18.6 bits;  conditional E-value: 2e-06
    TIGR02868 471 rlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvv 524
                   lSGG++ R+ +A    +   +l++DE + hL  ++ ++l++++ + + g  vv
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGGLLVV 732
                  79***********9999***************************9998887554 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0     0.002      0.13     471     514 ..     209     251 ..     180     257 .. 0.81
   2 !   33.2   0.0   5.9e-11   3.7e-09     602     666 ..     384     446 ..     373     469 .. 0.90
   3 !   33.0   0.0     7e-11   4.4e-09     459     527 ..     553     621 ..     512     636 .. 0.80
   4 !   22.5   0.0   1.1e-07   6.7e-06     603     678 ..     679     753 ..     669     767 .. 0.89

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.002
    TIGR03375 471 vsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklll 514
                  ++++  e+ ++ L++  lk +   + aiiG++G GK+tll+ ++
  MMETSP1061-20121228|39401_1 209 ITLSL-ENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIA 251
                  55554.4567788899999999999**************97665 PP

  == domain 2    score: 33.2 bits;  conditional E-value: 5.9e-11
    TIGR03375 602 esLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe 666
                  +sLSgG r  vala  ll +p+il+LDEPt++lD ++   l  +L+++   +T++ v+H   +L+
  MMETSP1061-20121228|39401_1 384 KSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSY--PHTVITVSHDRGFLN 446
                  68*********************************9999999999876..579999999888876 PP

  == domain 3    score: 33.0 bits;  conditional E-value: 7e-11
    TIGR03375 459 reklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlld 527
                   +++  +++l++ + + + e +  L+++++ +   +k+a++G +G GK+tll+l++g+++p +Gsv+++
  MMETSP1061-20121228|39401_1 553 INDVTFDYSLEQSDGTKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  333344444444444444556678******************************************986 PP

  == domain 4    score: 22.5 bits;  conditional E-value: 1.1e-07
    TIGR03375 603 sLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLe.lvdriivldkGr 678
                   LSgGQ+  v++a + ++ p++l++DE +++l + + + l+++++++  +  l++v+H + +++  ++ i ++++G+
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGG--LLVVSHDQYFVNaTCNEIWIVEEGK 753
                  69*******************************************99765..9999999988862578899999988 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0    0.0011     0.067       3      51 ..     205     253 ..     203     267 .. 0.91
   2 !   43.0   0.0   1.4e-13   8.7e-12      86     212 ..     335     457 ..     295     459 .. 0.83
   3 !   25.7   0.0   2.7e-08   1.7e-06      16      63 ..     575     622 ..     559     644 .. 0.86
   4 !   17.8   0.0   7.1e-06   0.00044     136     213 ..     678     752 ..     652     753 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.0011
    TIGR02673   3 elekvskeyaagveaLkdvslkiekgeflfltGasGaGkttllklllga 51 
                  ++++++++ ++g++ L++ +lk+     + ++G+ G Gkttll+ + + 
  MMETSP1061-20121228|39401_1 205 NVQRITLSLENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIANW 253
                  678999999**********************************988765 PP

  == domain 2    score: 43.0 bits;  conditional E-value: 1.4e-13
    TIGR02673  86 qDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelvgledkakalp.eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelek 212
                   D k+ +d   l+n+   l++ g++  + q+r +++l+ + ++d ++a p ++lsgG + Rva+a +++ +P++l+ DePt  lD e    +l l  +l ++  tvi ++hd+ ++++v   ++e+++
  MMETSP1061-20121228|39401_1 335 DDKKFSEDLEKLNNIYERLTLLGAD--TAQSRATAILSGLQFTDDMQASPiKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLE---AVLWLEAHLRSYPHTVITVSHDRGFLNEVCSDTIEFKN 457
                  5666677777777877777777765..5688999**************99457********************************75...799999********************999999888876 PP

  == domain 3    score: 25.7 bits;  conditional E-value: 2.7e-08
    TIGR02673  16 eaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevag 63 
                    L+++++ +++++ + l Ga G Gkttll+l++g+++p +G+v v+ 
  MMETSP1061-20121228|39401_1 575 YLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNS 622
                  4699****************************************9974 PP

  == domain 4    score: 17.8 bits;  conditional E-value: 7.1e-06
    TIGR02673 136 eelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelekg 213
                  + lsgG + Rv+ a    ++P+ll+ De    l  +    +++ +++++     ++v++hd+ +v+++ + + ++e+g
  MMETSP1061-20121228|39401_1 678 RYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFK---GGLLVVSHDQYFVNATCNEIWIVEEG 752
                  469****************************999999888888887775...3578889*****99998888888777 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0    0.0035      0.22      15      46 ..     219     250 ..     205     253 .. 0.83
   2 !   33.7   0.0   9.9e-11   6.1e-09      79     198 ..     337     457 ..     310     480 .. 0.79
   3 !   51.5   0.1   3.5e-16   2.2e-14       7     202 ..     568     754 ..     562     766 .. 0.84

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.0035
    TIGR03740  15 vvnnvslkvkknsvygllGpnGaGkstllkll 46 
                  ++++ +lk   ++ y+++G nG Gk+tll  +
  MMETSP1061-20121228|39401_1 219 LLDQGDLKFAYQRRYAIIGENGVGKTTLLNRI 250
                  56777889999999**************9866 PP

  == domain 2    score: 33.7 bits;  conditional E-value: 9.9e-11
    TIGR03740  79 Palyenltarenlkvrtlllglp..esrieevlkivdlent.ekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiis 198
                      e+l   +n+  r +llg +  +sr   +l+ ++++++ +    k +s G + r+ +a +ll +P++l+ldePtn ld   +  l   ++s+p+  itv      l ev   +d i + +
  MMETSP1061-20121228|39401_1 337 KKFSEDLEKLNNIYERLTLLGADtaQSRATAILSGLQFTDDmQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSYPHTVITVSHDRGFLNEV--CSDTIEFKN 457
                  556677888888888888887652268899999999998761456799*************************************************999998888888887..456666544 PP

  == domain 3    score: 51.5 bits;  conditional E-value: 3.5e-16
    TIGR03740   7 skkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkkiGsliesPa..lyenltarenlkvrtlllglpesrieevlkivdlente.kkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGkl 202
                  +kk + + +++++++ ++++s  +llG nG Gk+tll l+ G lr+ +G++++++          iG + ++ +      l+a en+    +  + +++ i + l   +++  +  k  + +s G k r+  a+   ++P+lli+de +n l    ++ l + i+ f+     +++ sh    v+ ++++i i++eGk 
  MMETSP1061-20121228|39401_1 568 TKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNSGL-------RIGHFTQHHSerFDLSLSAIENML--NIFNSAEDQVIRSFLGRFQIQGADaLKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKG---GLLVVSHDQYFVNATCNEIWIVEEGKA 754
                  6777788899******************************************98653.......466666544311445789999985..5778999************9976515788899******************************99999999999999864...45667999999*************985 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0     0.003      0.19      16      53 ..     215     252 ..     204     277 .. 0.86
   2 !   40.2   0.0     9e-13   5.6e-11     116     219 ..     359     460 ..     340     462 .. 0.83
   3 !   23.6   0.1   1.1e-07   6.7e-06      16      65 ..     572     621 ..     561     638 .. 0.85
   4 !   18.7   0.0   3.3e-06   0.00021     141     209 ..     679     743 ..     649     754 .. 0.79

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.003
    TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllgg 53 
                  + +++l++ +l+       ai+G+ G Gk+tll  ++ 
  MMETSP1061-20121228|39401_1 215 NGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIAN 252
                  557788999999999999***************87765 PP

  == domain 2    score: 40.2 bits;  conditional E-value: 9e-13
    TIGR02211 116 keakerakellekvglekrinkkp.selsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakk.ldrvlelkdgkl 219
                    a++ra+++l+ +++ + ++  p   lsGG r rva+a +l+ +P++++ dePt +ld +   +++ l  +l++  + +++ v+hd+ + ++  + ++e+k+ kl
  MMETSP1061-20121228|39401_1 359 DTAQSRATAILSGLQFTDDMQASPiKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLE---AVLWLEAHLRSYPH-TVITVSHDRGFLNEvCSDTIEFKNKKL 460
                  568999***************999457********************************86...57778888876555.57899***9987651577889998887 PP

  == domain 3    score: 23.6 bits;  conditional E-value: 1.1e-07
    TIGR02211  16 leievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllk 65 
                  ++  +l+++++ ++++  +a++G+ G Gk+tll l+ g  +p +G+v+++
  MMETSP1061-20121228|39401_1 572 EAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  445689*****************************************997 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 3.3e-06
    TIGR02211 141 elsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkld 209
                   lsGG++ rv+ a    ++P+l++ de   +l  ++ +++ + +++     + +llvv+hd+ +++ + 
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQD----FKGGLLVVSHDQYFVNATC 743
                  59******************************99888877776665....5679********9987654 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0    0.0056      0.35      15      47 ..     218     250 ..     204     260 .. 0.80
   2 !   41.6   0.0   3.4e-13   2.1e-11      99     179 ..     351     432 ..     338     461 .. 0.86
   3 !   41.2   0.3   4.3e-13   2.7e-11      15     178 ..     575     725 ..     562     773 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.0056
    TIGR03864  15 ralddvsltvakgefvaLLGpnGaGkstLfsll 47 
                  + ld+ +l+ a  +  a++G nG Gk+tL++ +
  MMETSP1061-20121228|39401_1 218 SLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRI 250
                  4578888888889999*************9866 PP

  == domain 2    score: 41.6 bits;  conditional E-value: 3.4e-13
    TIGR03864  99 aaLhGlsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelv 179
                    L  l+  +a++r +++l+ l++++  ++  +++L+GG r rv +a +ll eP++L+lDe+t  LD+e+   l +++r+  
  MMETSP1061-20121228|39401_1 351 ERLTLLGADTAQSRATAILSGLQFTDDMQASpIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSYP 432
                  5677789999**************98766544**************************************999999999865 PP

  == domain 3    score: 41.2 bits;  conditional E-value: 4.3e-13
    TIGR03864  15 ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikva.GldlrrapkealarlGvvfqqst..lDldlsveqnlryhaaLhGlsraeaeerieealarlglaeraeek.vreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrel 178
                    l+++++ + +++ +aLLG nG Gk+tL++l+ + ++  +g++ v+ Gl           r+G   q+++  +Dl ls  +n+        + +++  + i++ l r++++  ++ k +r L+GG++ rv  a     +P+lL++De +  L +++ +al++++++ 
  MMETSP1061-20121228|39401_1 575 YLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNsGL-----------RIGHFTQHHSerFDLSLSAIENML------NIFNSAEDQVIRSFLGRFQIQGADALKpMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDF 725
                  5799**********************************999999885133...........456655655411677777777764......34455567889*********98877665*******************************************999875 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00038     0.023       5      49 ..     206     251 ..     202     280 .. 0.84
   2 !   18.0   0.0   6.2e-06   0.00039     109     210 ..     350     450 ..     337     473 .. 0.79
   3 !   27.7   0.1   6.8e-09   4.2e-07      18      64 ..     577     623 ..     562     639 .. 0.87
   4 !   32.2   0.0   2.9e-10   1.8e-08     110     229 ..     645     764 ..     628     771 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00038
    TIGR03411   5 vedvsvsfd.gfkalndlslsveegelrviiGpnGaGkttllDvit 49 
                  v+ ++ s + g + l++ +l+ + +   +iiG nG Gkttll+ i+
  MMETSP1061-20121228|39401_1 206 VQRITLSLEnGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIA 251
                  5666666642566678889999999999**************9875 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 6.2e-06
    TIGR03411 109 lallfarlskeekerieevleligLeekad.kkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelae 210
                  ++ l+   ++++++r +++l+ ++ ++ ++ +   +Ls G + ++ ++  l+ ep++l+lDeP+  +  e        l++    ++v+ v hD +f++e+ +
  MMETSP1061-20121228|39401_1 350 YERLTLLGADTAQSRATAILSGLQFTDDMQaSPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRS--YPHTVITVSHDRGFLNEVCS 450
                  555555566677777888888888776655156789****************************99987766666666664..579************98754 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 6.8e-09
    TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk 64 
                  l+++++ +++ +  +++G+nG Gkttll++i+G+ rp +Gsv++++ 
  MMETSP1061-20121228|39401_1 577 LQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNSG 623
                  78999******99*****************************99865 PP

  == domain 4    score: 32.2 bits;  conditional E-value: 2.9e-10
    TIGR03411 110 allfarlskeekerieevleligLeekad.kkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelak.ersvvvvehDmefvrelaekvtvlheGkvl.aeGsldev 229
                  +++ + ++++e++ i++ l   +++     k    Ls Gqk ++  ++l  q+p+ll++De    ++ +  +    l++++++ +  ++vv hD  fv++  +++ +++eGk    +G++d+ 
  MMETSP1061-20121228|39401_1 645 ENMLNIFNSAEDQVIRSFLGRFQIQGADAlKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDA---LIQAIQDfKGGLLVVSHDQYFVNATCNEIWIVEEGKASrFDGTFDDY 764
                  55566678888888999999888876544166789**************************888888766655...555555424479***********************974257777765 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.014      0.85     303     364 ..     187     250 ..     165     261 .. 0.79
   2 !   25.9   0.0   1.2e-08   7.2e-07     453     520 ..     384     448 ..     374     465 .. 0.86
   3 !   26.0   0.0   1.1e-08   6.8e-07     307     378 ..     550     621 ..     541     652 .. 0.88
   4 !   31.0   0.0   3.2e-10     2e-08     455     534 ..     680     757 ..     674     767 .. 0.86

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.014
    TIGR01842 303 areealklPepege...levenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarll 364
                  a  +a+ lP  +g+   ++v++++l   ++  + l + +++       aiiG  g Gk++L   +
  MMETSP1061-20121228|39401_1 187 AGVSAMILPTTKGKemdVNVQRITLSLENGT-SLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRI 250
                  5557899999887433377888888776665.88999999999999**************98766 PP

  == domain 2    score: 25.9 bits;  conditional E-value: 1.2e-08
    TIGR01842 453 aaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelv 520
                  ++LsgG r R+aLa  l  +P +++LDeP   LD e     +    +l+    tv++++h    l+ v
  MMETSP1061-20121228|39401_1 384 KSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAV---LWLEAHLRSYPHTVITVSHDRGFLNEV 448
                  58********************************9754...444468888999999999988887755 PP

  == domain 3    score: 26.0 bits;  conditional E-value: 1.1e-08
    TIGR01842 307 alklPepegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlD 378
                   +++ ++ +  ++e+ + ++ +e+++ l++i+f l++ + +a++G+ g Gk++L  l++G   p++Gsv ++
  MMETSP1061-20121228|39401_1 550 IIAINDVTFDYSLEQSDGTKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  567777888889999999999999********************************************9775 PP

  == domain 4    score: 31.0 bits;  conditional E-value: 3.2e-10
    TIGR01842 455 LsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsll.elvdkilvlkdGalkaf 534
                  LsgGq+ R++ a   y  P+l+++De    L  +   al++a+++ k      +v++h    + ++ ++i ++++G+ ++f
  MMETSP1061-20121228|39401_1 680 LSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFK---GGLLVVSHDQYFVnATCNEIWIVEEGKASRF 757
                  9******************************************9986...45667777665551678**********9998 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.23        15      32      53 ..     233     254 ..     204     282 .. 0.73
   2 !   35.5   0.0   2.8e-11   1.7e-09      82     214 ..     330     458 ..     310     460 .. 0.88
   3 !   27.7   0.1   6.9e-09   4.3e-07      15      74 ..     573     633 ..     560     644 .. 0.86
   4 !   20.6   0.0   1.1e-06   6.6e-05     119     215 ..     659     753 ..     643     754 .. 0.83

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.23
    TIGR00960  32 vflvGhsGaGkstllklilgie 53 
                    ++G+ G Gk+tll+ i + e
  MMETSP1061-20121228|39401_1 233 YAIIGENGVGKTTLLNRIANWE 254
                  3489************998765 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 2.8e-11
    TIGR00960  82 iGivfqdfkllsdrtvydnvalalriiGvkgreieervsaalekvGlkdkakalPvq.lsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskG 214
                  i     d k+ +d + ++n+   l ++G+    ++ r++a l  + ++d  +a P++ lsgG + rva+a +++ +P +l+ dePt  ld e    +l l  +++    tv+  +hd+ ++++    ++++++ 
  MMETSP1061-20121228|39401_1 330 IESAEDDKKFSEDLEKLNNIYERLTLLGAD--TAQSRATAILSGLQFTDDMQASPIKsLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLE---AVLWLEAHLRSYPHTVITVSHDRGFLNEVCSDTIEFKNK 458
                  555567889999999999**999***9976..578899*****************754********************************87...5888999999999************99999888887765 PP

  == domain 3    score: 27.7 bits;  conditional E-value: 6.9e-09
    TIGR00960  15 aelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvs.gqdltklrdre 74 
                  ae  l+++++ +++ + + l G  G Gk+tll+li+g  +p aG + v+ g  ++++ +++
  MMETSP1061-20121228|39401_1 573 AEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNsGLRIGHFTQHH 633
                  55679*****************************************996367888877665 PP

  == domain 4    score: 20.6 bits;  conditional E-value: 1.1e-06
    TIGR00960 119 vsaalekvGlkdkakalPvq.lsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGk 215
                  ++  l +  +++ +   P++ lsgG++ rv+ a    ++P+ll+ de +  l  +    +++ +++++     +lv +hd+ +v+ + + +  +++Gk
  MMETSP1061-20121228|39401_1 659 IRSFLGRFQIQGADALKPMRyLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFK---GGLLVVSHDQYFVNATCNEIWIVEEGK 753
                  5556666677777777787549******************************9999888888888775...3578889******99999988888886 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   2.3e-05    0.0014      12      47 ..     216     251 ..     204     260 .. 0.80
   2 !   22.5   0.0   2.2e-07   1.4e-05     111     162 ..     365     416 ..     293     453 .. 0.84
   3 !   43.6   0.1   7.9e-14   4.9e-12      14     212 ..     575     756 ..     562     773 .. 0.83

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 2.3e-05
    TIGR03410  12 esevlrdvslevekgevvavlGrngvGkttllkalv 47 
                   +++l + +l+ + ++  a++G ngvGkttll  + 
  MMETSP1061-20121228|39401_1 216 GTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIA 251
                  3567888899**********************9876 PP

  == domain 2    score: 22.5 bits;  conditional E-value: 2.2e-07
    TIGR03410 111 peeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGi 162
                     i++     ++m++     LsGG +  +a+a +L+ eP +l+LDePt+ +
  MMETSP1061-20121228|39401_1 365 ATAILSGLQFTDDMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHL 416
                  455566666677888888899****************************866 PP

  == domain 3    score: 43.6 bits;  conditional E-value: 7.9e-14
    TIGR03410  14 evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeiele.geditklkpeervkaGiayvpqGreifpkltveenlelglealkkkekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevva 212
                   +l+++++ +++++ +a+lG ng Gkttll  ++g+l+  +G++ ++ g  i + + ++  +  +           +l+  en+   +++++    +++ + +  F +  +   +    LsGGq+  ++ a    ++P+ll++De ++ +    ++ + ++i++ +     ++l+v +   f+ ++ ++++++e+G+   
  MMETSP1061-20121228|39401_1 575 YLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNsGLRIGHFTQHHSERFDL-----------SLSAIENMLNIFNSAE---DQVIRSFLGRFQIQGADALKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKG----GLLVVSHDQYFVNATCNEIWIVEEGKASR 756
                  57999**************************************9886256777776666555444...........6899999988887766...699999*******9999999999**************99***********9999988888777777776654....57777777789999***********9764 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.0       2.6   1.6e+02      26      54 ..     219     247 ..     209     254 .. 0.81
   2 !   25.6   0.0   2.7e-08   1.7e-06     116     224 ..     351     455 ..     341     476 .. 0.82
   3 !   27.4   0.1   7.5e-09   4.7e-07       3      70 ..     551     620 ..     549     641 .. 0.82
   4 !   31.2   0.0   5.2e-10   3.2e-08     115     229 ..     644     754 ..     640     780 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 2.6
    TIGR02769  26 vldnvslsleeGetvallGrsGaGkstla 54 
                  +ld+ +l+       a++G+ G Gk+tl 
  MMETSP1061-20121228|39401_1 219 LLDQGDLKFAYQRRYAIIGENGVGKTTLL 247
                  5677777888888899***********85 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 2.7e-08
    TIGR02769 116 rhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvl 224
                  ++lt l +   + r++++l+ +++ +++     + lsGG   r+++a +l +eP +++lde    ldl     +l l  +l+     +++ ++hd    ++++   + +
  MMETSP1061-20121228|39401_1 351 ERLTLLGADTAQSRATAILSGLQFTDDMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEA---VLWLEAHLRS-YPHTVITVSHDRGFLNEVCSDTIEF 455
                  5677788889999**********998877777799********************************864...5555555554.5566788999988888888776655 PP

  == domain 3    score: 27.4 bits;  conditional E-value: 7.5e-09
    TIGR02769   3 levsdvshtyrtggllg..kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsf 70 
                  + ++dv+  y  ++  g  k++ + +l+++++ l++   +allG  G Gk+tl  l++G  +P  G+v  
  MMETSP1061-20121228|39401_1 551 IAINDVTFDYSLEQSDGtkKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVV 620
                  77899999997666655326777789****************************************9865 PP

  == domain 4    score: 31.2 bits;  conditional E-value: 5.2e-10
    TIGR02769 115 lrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqi 229
                  ++++ ++ +s++ + i  +l   +++  ++ k  r lsGGq  r++ a     +P+l+++de    l +    ++++ ++++        l+++hd   v+  ++++ +++eG+ 
  MMETSP1061-20121228|39401_1 644 IENMLNIFNSAEDQVIRSFLGRFQIQGADALKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDF----KGGLLVVSHDQYFVNATCNEIWIVEEGKA 754
                  578888889999999*********************************988899*********9988887665555555444....446899*********************85 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   0.00024     0.015       3      53 ..     205     255 ..     203     283 .. 0.82
   2 !   28.5   0.0   3.1e-09     2e-07     121     182 ..     360     422 ..     343     478 .. 0.78
   3 !   15.2   0.1   3.8e-05    0.0024      15      62 ..     574     621 ..     567     637 .. 0.86
   4 !   27.2   0.0   7.9e-09   4.9e-07     109     189 ..     642     723 ..     635     771 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 0.00024
    TIGR02315   3 evenlskvypngkqalknvnleikkGelvaviGlsGaGkstllrsinrlve 53 
                  +v++++ + +ng++ l++ +l++      a+iG+ G Gk+tll  i + ++
  MMETSP1061-20121228|39401_1 205 NVQRITLSLENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIANWED 255
                  688889999999999****************************99987665 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 3.1e-09
    TIGR02315 121 edkekAlelLervglae.laakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpkssk 182
                  + +++A ++L+ +++++ ++a+  ++LsGG + Rva+a +l+ +p++++ DEP+  LD ++  
  MMETSP1061-20121228|39401_1 360 TAQSRATAILSGLQFTDdMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVL 422
                  557889999999998652677889**********************************87654 PP

  == domain 3    score: 15.2 bits;  conditional E-value: 3.8e-05
    TIGR02315  15 kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsille 62 
                  +  l+++n+ +++   +a++G  G Gk+tll  i +  ++  gs++++
  MMETSP1061-20121228|39401_1 574 EYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  56799*****************************99999999988775 PP

  == domain 4    score: 27.2 bits;  conditional E-value: 7.9e-09
    TIGR02315 109 stlksllglfseedkekAlelLervglael.aakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllk 189
                  s+++++l++f++++ +   + L r++++   a k + +LsGGq+ Rv+ a    q+p+l+++DE    L   +   ++++++
  MMETSP1061-20121228|39401_1 642 SAIENMLNIFNSAEDQVIRSFLGRFQIQGAdALKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQ 723
                  67899**********************9862567789***************************988776666655555544 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0   0.00041     0.025      18      48 ..     224     254 ..     210     261 .. 0.86
   2 !   24.8   0.0   4.9e-08     3e-06     111     189 ..     367     442 ..     352     463 .. 0.71
   3 !   28.3   0.1   4.1e-09   2.6e-07      14      59 ..     577     622 ..     568     651 .. 0.84
   4 !   15.8   0.0   2.7e-05    0.0017     128     209 ..     679     756 ..     652     760 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00041
    TIGR01277  18 dlsveaGervailGesGaGkstllnliaGfl 48 
                  dl+ +   r ai+Ge G Gk+tlln ia ++
  MMETSP1061-20121228|39401_1 224 DLKFAYQRRYAIIGENGVGKTTLLNRIANWE 254
                  5666777899*****************9865 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 4.9e-08
    TIGR01277 111 dvarqvGiadylerlp.eelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthsl 189
                  ++   +  +d ++  p ++lsGG r rvala  l+ e  il+ldep   ld      +l l ++l      t++ v+h+ 
  MMETSP1061-20121228|39401_1 367 AILSGLQFTDDMQASPiKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLE---AVLWLEAHL-RSYPHTVITVSHDR 442
                  4555555667777777479****************************999953...344443333.44556777777765 PP

  == domain 3    score: 28.3 bits;  conditional E-value: 4.1e-09
    TIGR01277  14 plefdlsveaGervailGesGaGkstllnliaGflepasGeikvnd 59 
                    + ++ +++  ++a+lG  G Gk+tllnli G l p+ G++ vn 
  MMETSP1061-20121228|39401_1 577 LQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNS 622
                  456677788999********************************96 PP

  == domain 4    score: 15.8 bits;  conditional E-value: 2.7e-05
    TIGR01277 128 elsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                   lsGGq+ rv++a    +   +l++de    l       + al+ +  ++ k  ll+v+h+   + a+ +++ +ve+Gk + 
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMD---AVDALI-QAIQDFKGGLLVVSHDQYFVNATCNEIWIVEEGKASR 756
                  59***********8887777788899987665443...344555.667888899************************9875 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0097       0.6      14      54 ..     218     258 ..     204     298 .. 0.71
   2 !   39.9   0.0   9.1e-13   5.6e-11     121     245 ..     359     480 ..     344     486 .. 0.77
   3 !   15.3   0.0   3.1e-05    0.0019       5      60 ..     566     621 ..     562     647 .. 0.82
   4 !   17.9   0.0   4.9e-06    0.0003     146     232 ..     679     762 ..     666     781 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0097
    TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletide 54 
                  ++ld+ +l+ a  ++ a+iG  G Gk+t+l  +   e +++
  MMETSP1061-20121228|39401_1 218 SLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIANWEDLEG 258
                  4689999999999*****************87777666654 PP

  == domain 2    score: 39.9 bits;  conditional E-value: 9.1e-13
    TIGR03005 121 aeaekravelldmvGladkadalpaq.lsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGki.veeGkpdeifrkpkeertre 245
                    a++ra  +l  + ++d ++a p + lsGG + rva+a +l ++p +l++de+t  ld e v  + + lr        t++ v+h+ gf +e++   + f++ k+   +G+ d+ f k k+e+ ++
  MMETSP1061-20121228|39401_1 359 DTAQSRATAILSGLQFTDDMQASPIKsLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSY----PHTVITVSHDRGFLNEVCSDTIEFKNKKLtYYRGNYDN-FVKLKQEKLKN 480
                  3578899999**************754********************************87665544444444....45999***********9765555555555156666665.66777777665 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 3.1e-05
    TIGR03005   5 dvtkrfgeltvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikve 60 
                  d tk+ +   +l+++++ +++  k+al+G  G Gk+t+l ++m   +   Gs+ v+
  MMETSP1061-20121228|39401_1 566 DGTKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  66788888889*******************************97655555666654 PP

  == domain 4    score: 17.9 bits;  conditional E-value: 4.9e-06
    TIGR03005 146 qlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkive.eGkpd 232
                   lsGGqk rv+ a     rp++l+ de +  l  + v+ +++ ++++    +  +l+v+h+  f +  ++ +   + Gk    +G  d
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDF----KGGLLVVSHDQYFVNATCNEIWIVEEGKASRfDGTFD 762
                  59***********988899*************999999998888776....5689***********9999999999998764244444 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.9   0.0     0.028       1.7      14      51 ..     218     255 ..     204     267 .. 0.84
   2 !   35.5   0.0   2.4e-11   1.5e-09     107     203 ..     361     454 ..     315     468 .. 0.77
   3 !   36.0   0.2   1.8e-11   1.1e-09      13     219 ..     574     764 ..     563     773 .. 0.81

  Alignments for each domain:
  == domain 1    score: 5.9 bits;  conditional E-value: 0.028
    TIGR00968  14 qalddvdlevktGslvallGpsGsGkstllrviaGlek 51 
                    ld+ dl+    +  a++G  G Gk+tll  ia  e+
  MMETSP1061-20121228|39401_1 218 SLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIANWED 255
                  4577788888888899*****************98775 PP

  == domain 2    score: 35.5 bits;  conditional E-value: 2.4e-11
    TIGR00968 107 ikakveellelvqlek.lgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivv 203
                   + + + +l+ +q+++ ++ +  + lsGG r rvala +l +ep++l+ldep   ld +    l a lr   +    t + v+hd+    ev  + + 
  MMETSP1061-20121228|39401_1 361 AQSRATAILSGLQFTDdMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSYPH----TVITVSHDRGFLNEVCSDTIE 454
                  4566788888888876155555578********************************9998888888888765....556788888777777666555 PP

  == domain 3    score: 36.0 bits;  conditional E-value: 1.8e-11
    TIGR00968  13 fqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleirkkdkakikakveellelvqleklgdrypsq.lsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevy 219
                     l+++++ +++ s +allG  G Gk+tll +i G  +p +G ++++            +iG   qh++    l+++  i   l+i +  + +    +  +l   q+++ +   p + lsGGq+ rv++a      p++l++de    l     + l + ++      k   ++v+hdq       ++i ++e+Gk  + + + + y
  MMETSP1061-20121228|39401_1 574 EYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNS---------GLRIGHFTQHHSERFDLSLS-AIENMLNIFNSAEDQ---VIRSFLGRFQIQGADALKPMRyLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQD----FKGGLLVVSHDQYFVNATCNEIWIVEEGKASRFDGTFDDY 764
                  55799***************************************99874.........34699999999987777765.466668887665554...47789999999999998886449***********877788*********999988777776666555....555667899********************99887765555 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.9   0.0      0.12       7.6      34      55 ..     233     254 ..     212     282 .. 0.72
   2 !   36.4   0.0   1.3e-11   8.3e-10     115     206 ..     358     446 ..     340     461 .. 0.85
   3 !   30.2   0.1   1.1e-09   6.9e-08      18     218 ..     574     753 ..     550     755 .. 0.71

  Alignments for each domain:
  == domain 1    score: 3.9 bits;  conditional E-value: 0.12
    TIGR02982  34 viltGpsGsGkttlltligglr 55 
                    + G+ G Gkttll+ i+   
  MMETSP1061-20121228|39401_1 233 YAIIGENGVGKTTLLNRIANWE 254
                  55779**********9998765 PP

  == domain 2    score: 36.4 bits;  conditional E-value: 1.3e-11
    TIGR02982 115 akeakakaeelleavgleerldykp.edlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrild 206
                  a++a+++a+++l+ + + + ++  p + lsgG + rva+a +l  +P++++ dePt  ld ++    v  l+   r    t++ v hd   l+
  MMETSP1061-20121228|39401_1 358 ADTAQSRATAILSGLQFTDDMQASPiKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEA----VLWLEAHLRSYPHTVITVSHDRGFLN 446
                  5678999****************99678********************************764....66677778888899999999987765 PP

  == domain 3    score: 30.2 bits;  conditional E-value: 1.1e-09
    TIGR02982  18 kqvlfdinleiepgeiviltGpsGsGkttlltli.gglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnlle..sltaeqnvrmalelkeklsakeakakaeelleavgleerldykp.edlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildva.drivkmedGk 218
                  + +l++in+ +++   + l G+ G Gkttll+li g lr    G++ v  +               +iG+  q+h      sl a +n+   l++     ++++ +  +++l    ++     kp + lsgGqk rv++a    +rP+l++ de    l  ++  ++++      ++    +l+v hd+  ++ + + i  +e+Gk
  MMETSP1061-20121228|39401_1 574 EYLLQKINFGLDNSSKIALLGANGQGKTTLLNLImGQLRP-VAGSVVVN-S-------------GLRIGHFTQHHSERFdlSLSAIENM---LNIF----NSAEDQVIRSFLGRFQIQGADALKPmRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQ----AIQDFKGGLLVVSHDQYFVNATcNEIWIVEEGK 753
                  45899**********9****************98245555.56877553.2.............2357888787764320155665554...3333....3344556677888888887777777257***************************99997665444444....4455667899*****998886426666667665 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0055      0.34      17      45 ..     224     252 ..     208     309 .. 0.86
   2 !   28.3   0.0   3.4e-09   2.1e-07     127     191 ..     381     441 ..     346     488 .. 0.79
   3 !   22.5   0.1     2e-07   1.3e-05       7      58 ..     570     622 ..     567     634 .. 0.89
   4 !   19.0   0.0   2.4e-06   0.00015     129     224 ..     677     769 ..     670     786 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0055
    TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaG 45 
                  dl+   + + a+ G+ G Gkt+l++ ia 
  MMETSP1061-20121228|39401_1 224 DLKFAYQRRYAIIGENGVGKTTLLNRIAN 252
                  5566667799***************9996 PP

  == domain 2    score: 28.3 bits;  conditional E-value: 3.4e-09
    TIGR02142 127 RlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHs 191
                     ++LsGG + Rva++  lL +P++L++DeP   LD +     + +Le   ++    ++ vsH+
  MMETSP1061-20121228|39401_1 381 SPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEA----VLWLEAHLRSYPHTVITVSHD 441
                  45689********************************853....446666666666666666665 PP

  == domain 3    score: 22.5 bits;  conditional E-value: 2e-07
    TIGR02142   7 krlgdfeL.dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldg 58 
                  kr +++ L ++++ l+ +  +al G+ G Gkt+l++li G +rp +g +v++ 
  MMETSP1061-20121228|39401_1 570 KREAEYLLqKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNS 622
                  677777774699999999********************************996 PP

  == domain 4    score: 19.0 bits;  conditional E-value: 2.4e-06
    TIGR02142 129 pgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaa.gkleevlaskd 224
                   + LsGG k Rv+ +     +P+LL++De    L +   + ++       +++k  +l vsH+   v+   +++ ++e+G+ + + g+ ++  ++++
  MMETSP1061-20121228|39401_1 677 MRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQ----AIQDFKGGLLVVSHDQYFVNATCNEIWIVEEGKASRFdGTFDDYKSHTA 769
                  578***********999999***********9999998888775....456788889************************8654266666666654 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0     0.075       4.6     285     329 ..     206     249 ..     200     258 .. 0.69
   2 !   36.0   0.0     1e-11   6.3e-10     383     527 ..     346     482 ..     321     485 .. 0.77
   3 !   15.3   0.0     2e-05    0.0012     261     346 ..     532     623 ..     471     636 .. 0.61
   4 !   23.0   0.0     9e-08   5.6e-06     427     506 ..     679     754 ..     669     777 .. 0.87

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.075
    TIGR03269 285 vskryisvdrGvvkavdnvslevkekeifGlvGtsGaGkttlski 329
                  v++  +s++ G    +d+ +l+   +  + ++G  G Gkttl + 
  MMETSP1061-20121228|39401_1 206 VQRITLSLENGT-SLLDQGDLKFAYQRRYAIIGENGVGKTTLLNR 249
                  555555666664.45677777777788888888888888887544 PP

  == domain 2    score: 36.0 bits;  conditional E-value: 1e-11
    TIGR03269 383 lenlteaiglelpdelakrkavivlkavGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivk.iGdpeeiveelteeekekm 527
                  l+n+ e ++l l  + a+ +a  +l    f+++   + +    + ls G r rvala  l+ ep i++ldept  +d  +   + e+ l   +   +t + vshd  f++evc  +   ++ k+    G+ ++ v+   e+ k++m
  MMETSP1061-20121228|39401_1 346 LNNIYERLTL-LGADTAQSRATAILSGLQFTDDMQASPI----KSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWL-EAHL---RSYPHTVITVSHDRGFLNEVCSDTIEFKNKKLTYyRGNYDNFVKLKQEKLKNQM 482
                  5666666665.6777889999999999999888665544....689******************************96544333.3333...34679****************988888888876415677777666555555555 PP

  == domain 3    score: 15.3 bits;  conditional E-value: 2e-05
    TIGR03269 261 lesvsevekekevevgediikvkdvskryisvd.rGvvk.....avdnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvG 346
                  +e+v ++   +   +g +ii ++dv   y   +  G  k      ++++++ + ++    l+G  G Gkttl ++++G l p +G v+v  G
  MMETSP1061-20121228|39401_1 532 METVWRFSIPSSEPLGRPIIAINDVTFDYSLEQsDGTKKreaeyLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNSG 623
                  55555555555555666666666666555321112332211111356778888888888888999999999999999999999888888655 PP

  == domain 4    score: 23.0 bits;  conditional E-value: 9e-08
    TIGR03269 427 elseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGki 506
                   ls G++ rv++a +  + p+++i+de +  +   ++ +  +++++a ++++   ++vshd  fv+  c+ + ++ +Gk 
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHL---SM-DAVDALIQAIQDFKGGLLVVSHDQYFVNATCNEIWIVEEGKA 754
                  69*************************88654...44.445788999*************************99999996 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.15       9.5      10      26 ..     234     250 ..     227     255 .. 0.88
   2 !   28.2   0.0   4.8e-09     3e-07     105     181 ..     377     450 ..     358     461 .. 0.80
   3 !   45.5   0.0   2.4e-14   1.5e-12       4     187 ..     585     750 ..     582     783 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.15
    TIGR03771  10 gllGpnGaGkttllrai 26 
                  +++G nG Gkttll  i
  MMETSP1061-20121228|39401_1 234 AIIGENGVGKTTLLNRI 250
                  689**********9876 PP

  == domain 2    score: 28.2 bits;  conditional E-value: 4.8e-09
    TIGR03771 105 eladrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcd 181
                  +++  p+  lsGG r rv +a +l ++p +l+ldep   ldl     ++ l  +l +  ++++ ++hd     ++c+
  MMETSP1061-20121228|39401_1 377 DMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLE---AVLWLEAHLRSYPHTVITVSHDRGFLNEVCS 450
                  577899***********************************85...5555666777888899999999776666666 PP

  == domain 3    score: 45.5 bits;  conditional E-value: 2.4e-14
    TIGR03771   4 dkGellgllGpnGaGkttllrailglikvakGsvkvagkssrkgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalervkltel.adrpvGelsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvlln 187
                  d+   ++llG nG Gkttll  i+g +++ +Gsv v++        +iG+  q h   +d  ++  + +l+              a+ + +++ l r +++   a +p+  lsGGq+ rv  a     +p+ll++de    l + + + l++ ++++      +l+++hd     atc+ + +++
  MMETSP1061-20121228|39401_1 585 DNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNSG------LRIGHFTQHHSERFDLSLSAIENMLNIFNS----------AEDQVIRSFLGRFQIQGAdALKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFK---GGLLVVSHDQYFVNATCNEIWIVE 750
                  666779******************************994......78*************999988887775443..........3335566777777776542568999*************98899*********999999988888877776665...579999***999999999988775 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00094     0.058      15      57 ..     218     259 ..     204     301 .. 0.77
   2 !   41.1   0.0   4.4e-13   2.7e-11     135     237 ..     375     476 ..     344     485 .. 0.82
   3 ?    7.0   0.0     0.011      0.68      16      46 ..     576     606 ..     566     621 .. 0.88
   4 !   16.5   0.0   1.4e-05   0.00087     144     241 ..     679     774 ..     667     780 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00094
    TIGR00972  15 ealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveev 57 
                  + l++ +l++  ++  a+iG  G Gk+tll  +   +dl  ++
  MMETSP1061-20121228|39401_1 218 SLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIANWEDLE-GF 259
                  457788999999999***************9999888875.44 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 4.4e-13
    TIGR00972 135 kdklkksal.sLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekpkek 237
                   d++++s++ sLsGG + r+++a +l +eP++l+lDePt  LD +a+  +e+ +++     t++ v h+  + ++v   t+ f + +l+ +    + f k k++
  MMETSP1061-20121228|39401_1 375 TDDMQASPIkSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSY--PHTVITVSHDRGFLNEVCSDTIEFKNKKLTYYRGNYDNFVKLKQE 476
                  57777776438*************************************999988765..48**************99999999888887776665555555555 PP

  == domain 3    score: 7.0 bits;  conditional E-value: 0.011
    TIGR00972  16 alkdvnleikknkvtaliGpsGcGkstllrs 46 
                   l+++n+ + + + +al+G  G Gk+tll  
  MMETSP1061-20121228|39401_1 576 LLQKINFGLDNSSKIALLGANGQGKTTLLNL 606
                  5899************************975 PP

  == domain 4    score: 16.5 bits;  conditional E-value: 1.4e-05
    TIGR00972 144 sLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifekpkekkted 241
                   LsGGq+ r++ a     +P++l++De +  L   a+  + + iq+ k    +++v h+  + +   +++ ++ eG+    + t + +++ + kkt++
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGG--LLVVSHDQYFVNATCNEIWIVEEGKASRFDGTFDDYKSHTAKKTRK 774
                  69***********988899*************999999999999999875..6889999999999999999999999998888888888877777766 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.11       6.9       1      22 [.     235     256 ..     235     262 .. 0.89
   2 !   35.3   0.0   2.3e-11   1.4e-09      73     160 ..     357     441 ..     347     449 .. 0.79
   3 !   12.8   0.1   0.00016    0.0098       1      30 [.     592     621 ..     592     635 .. 0.90
   4 !   22.8   0.0   1.4e-07   8.8e-06      78     183 ..     656     758 ..     646     772 .. 0.81

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.11
    TIGR01187   1 lLGpsGsGkttlLrllaGleel 22 
                  ++G  G GkttlL  +a  e+l
  MMETSP1061-20121228|39401_1 235 IIGENGVGKTTLLNRIANWEDL 256
                  6899************998876 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 2.3e-11
    TIGR01187  73 pkaeikervkeaLelvqlee.fakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthD 160
                  ++++ ++r +++L+  q+++ + ++ ++ lsGG r rvala ++  +P+iL+lDep   LD +    +   l+        tv+ v hD
  MMETSP1061-20121228|39401_1 357 GADTAQSRATAILSGLQFTDdMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLR----SYPHTVITVSHD 441
                  6678899*********9986266667788*******************************9765544444444....344467777777 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 0.00016
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilld 30 
                  lLG+ G GkttlL l+ G  ++ +G+++++
  MMETSP1061-20121228|39401_1 592 LLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  8*************************9875 PP

  == domain 4    score: 22.8 bits;  conditional E-value: 1.4e-07
    TIGR01187  78 kervkeaLelvqleefakrkpsq.lsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqig 183
                  ++ ++  L   q+++  + kp++ lsGGq+ rv++a    ++P++L++De    L     d + + +++++      +++v hDq    +  + i ++++Gk  + +
  MMETSP1061-20121228|39401_1 656 DQVIRSFLGRFQIQGADALKPMRyLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKG----GLLVVSHDQYFVNATCNEIWIVEEGKASRFD 758
                  5557788888999999888887549**************************999998777777666655554....35779********************987655 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.091       5.7     477     523 ..     203     248 ..     162     255 .. 0.79
   2 !   25.6   0.0   1.2e-08   7.3e-07     614     670 ..     384     440 ..     370     473 .. 0.93
   3 !   25.9   0.0   9.5e-09   5.9e-07     477     566 ..     550     652 ..     493     660 .. 0.71
   4 !   19.3   0.0   9.2e-07   5.7e-05     614     690 ..     678     755 ..     649     770 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.091
    TIGR03796 477 kvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiak 523
                   v+++ +t + ++  + l+++ +l+    +r A++G  G Gk t+  
  MMETSP1061-20121228|39401_1 203 DVNVQRITLSLENG-TSLLDQGDLKFAYQRRYAIIGENGVGKTTLLN 248
                  57778888887654.7899*************************855 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 1.2e-08
    TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaH 670
                  + lsGG r R+ +A +L  +P iL+lDE t  LD e+   ++++lr    t+i v+H
  MMETSP1061-20121228|39401_1 384 KSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSYPHTVITVSH 440
                  579*****************************************************9 PP

  == domain 3    score: 25.9 bits;  conditional E-value: 9.5e-09
    TIGR03796 477 kvelrnvtfgys.........aleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgk.pr...eeiprevlanslalvdqdivlfe 566
                   + +++vtf ys         + ++ l++++++ l++ +++Al G+ G Gk t+  l+ G  +p++G++++++  +    ++ + e +  sl+ ++  + +f+
  MMETSP1061-20121228|39401_1 550 IIAINDVTFDYSleqsdgtkkREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNSGlRIghfTQHHSERFDLSLSAIENMLNIFN 652
                  57888888888722222222133467******************************************99875413311133344556677777777777776 PP

  == domain 4    score: 19.3 bits;  conditional E-value: 9.2e-07
    TIGR03796 614 anlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrRgctciivaHRLstiR.dcdeiivlerGkvv 690
                  + lsGGq+ R+  A    ++P +Li+DE    L   +  a+ ++++      ++v+H    +   c+ei ++e+Gk  
  MMETSP1061-20121228|39401_1 678 RYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGGLLVVSHDQYFVNaTCNEIWIVEEGKAS 755
                  679************99****************************************98877537**********965 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.8   0.0       2.9   1.8e+02      18      48 ..     220     250 ..     202     255 .. 0.63
   2 !   31.7   0.0   3.7e-10   2.3e-08     127     221 ..     379     472 ..     354     526 .. 0.73
   3 !   39.9   0.0   1.2e-12   7.3e-11       2     221 ..     561     766 ..     560     783 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.8 bits;  conditional E-value: 2.9
    TIGR03522  18 ldevsfeaekGeivGflGPnGaGkstlmkil 48 
                  ld+  ++    +    +G nG Gk+tl+  +
  MMETSP1061-20121228|39401_1 220 LDQGDLKFAYQRRYAIIGENGVGKTTLLNRI 250
                  56555555555667789*********98755 PP

  == domain 2    score: 31.7 bits;  conditional E-value: 3.7e-10
    TIGR03522 127 qhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqevealcdrviiinkGkiva.dkkleelka 221
                  q   i  ls G+r rv la++ll +P++l+ldePt  ld + ++ + + +++     tvi  +h    ++ +c + i  ++ k+     + +++++
  MMETSP1061-20121228|39401_1 379 QASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSY--PHTVITVSHDRGFLNEVCSDTIEFKNKKLTYyRGNYDNFVK 472
                  4556999**********************************999999888865..56899999988888888988888777776531334444443 PP

  == domain 3    score: 39.9 bits;  conditional E-value: 1.2e-12
    TIGR03522   2 svevsdlsklygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlka.eqhkkigalskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdkt.vilsthimqevealcdrviiinkGkiv.adkkleelka 221
                  s+e sd +k+   ++ l+++ f  ++ + + +lG nG Gk+tl+ ++ g l++ +Gsv v+              iG++ +h     dl     l  + ++ ++ + + ++ ++ ++ +  ++  ++ k +  ls G + rv +a      P++li+de +  l  +   ++ ++i+ i   k  +++ +h    v+a c+++ i+++Gk    d + ++ k+
  MMETSP1061-20121228|39401_1 561 SLEQSDGTKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNS----------GLRIGHFTQHHSERFDLS----LSAIENMLNIFNSAEDQVIRSFLGRFQIQGaDALKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMD---AVDALIQAIQDFKGgLLVVSHDQYFVNATCNEIWIVEEGKASrFDGTFDDYKS 766
                  6677888999999*********************************************9864..........346999999999999996....556677777777888999999999999985278899*****************************99998755...6778888888877526677899999**************97524666666654 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.3   0.0    0.0082      0.51       5      55 ..     204     255 ..     200     259 .. 0.82
   2 !   28.5   0.0     3e-09   1.8e-07     109     179 ..     359     430 ..     346     445 .. 0.81
   3 !   20.7   0.0   6.8e-07   4.2e-05      11      64 ..     568     621 ..     559     635 .. 0.88
   4 !   15.8   0.0   2.1e-05    0.0013     115     214 ..     659     755 ..     649     770 .. 0.78

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.0082
    TIGR03265   5 lsieeiekefea.ftalkdislsvkkgelvclLGPsGCGkttLLriiaGLek 55 
                  +++++i+ ++e+ ++ l++ +l+ +     +++G  G GkttLL  ia  e+
  MMETSP1061-20121228|39401_1 204 VNVQRITLSLENgTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIANWED 255
                  678888888876255678889999999999***************9998775 PP

  == domain 2    score: 28.5 bits;  conditional E-value: 3e-09
    TIGR03265 109 eevaerveelLelvglsgseekyP.gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkk 179
                  + +++r + +L+ +++++  +  P   lsGG + rvaLa +l + P++L+LDeP   LD      L   l++
  MMETSP1061-20121228|39401_1 359 DTAQSRATAILSGLQFTDDMQASPiKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRS 430
                  667889999999999999999998456*******************************98776666666554 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 6.8e-07
    TIGR03265  11 ekefeaftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillg 64 
                  +k+ ea   l++i++ + ++  ++lLG  G GkttLL +i G  ++ aG+++++
  MMETSP1061-20121228|39401_1 568 TKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  677788889****************************************99886 PP

  == domain 4    score: 15.8 bits;  conditional E-value: 2.1e-05
    TIGR03265 115 veelLelvglsgseekyPg.qlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkie 214
                  ++++L   +++g++   P   lsGGq+ rv++a     +P+lL++De    L     + L + +++++  l    ++v hdq    + ++ i ++++gk +
  MMETSP1061-20121228|39401_1 659 IRSFLGRFQIQGADALKPMrYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGGL----LVVSHDQYFVNATCNEIWIVEEGKAS 755
                  5666666666666665564159***********99999*********999999988899988888887766....66899998888888888888887765 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0    0.0017      0.11      55      74 ..     234     253 ..     195     263 .. 0.89
   2 !   29.1   0.0   1.3e-09   7.9e-08     163     198 ..     382     417 ..     364     441 .. 0.89
   3 !   16.3   0.0   9.5e-06   0.00059      28      77 ..     564     613 ..     550     637 .. 0.76
   4 !   16.6   0.0   7.8e-06   0.00049     164     210 ..     677     723 ..     663     754 .. 0.85

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0017
    TIGR00955  55 AvlGsSGaGKtTLlnalafr 74 
                  A++G  G GKtTLln +a+ 
  MMETSP1061-20121228|39401_1 234 AIIGENGVGKTTLLNRIANW 253
                  9****************986 PP

  == domain 2    score: 29.1 bits;  conditional E-value: 1.3e-09
    TIGR00955 163 rvkglSgGerkRlalaselltdPilLfcDEPTsGLD 198
                   +k+lSgG r R+ala  ll +P +L++DEPT  LD
  MMETSP1061-20121228|39401_1 382 PIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLD 417
                  479********************************9 PP

  == domain 3    score: 16.3 bits;  conditional E-value: 9.5e-06
    TIGR00955  28 eealarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsek 77 
                  ++  ++k++   ll+++   + +   +A+lG+ G GKtTLln ++ + + 
  MMETSP1061-20121228|39401_1 564 QSDGTKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRP 613
                  44556777888899999988888899******************987664 PP

  == domain 4    score: 16.6 bits;  conditional E-value: 7.8e-06
    TIGR00955 164 vkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLk 210
                  ++ lSgG++ R+++a+ + + P+lL++DE    L       ++++++
  MMETSP1061-20121228|39401_1 677 MRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQ 723
                  688**************************988776555566666666 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.9   0.0    0.0015     0.096       6      50 ..     209     254 ..     204     267 .. 0.80
   2 !   18.8   0.0   2.9e-06   0.00018     144     216 ..     385     454 ..     361     480 .. 0.86
   3 !   16.7   0.0   1.3e-05    0.0008      12      50 ..     573     611 ..     564     642 .. 0.87
   4 !   22.9   0.0   1.7e-07     1e-05     145     222 ..     680     753 ..     670     765 .. 0.89

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 0.0015
    TIGR01978   6 lhvsved.keiLkglnlevkkGevhaimGpnGsGkstLskvlaghe 50 
                  +++s+e+  ++L++ +l+      +ai+G nG Gk tL + +a  e
  MMETSP1061-20121228|39401_1 209 ITLSLENgTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIANWE 254
                  5555554356788888888889999***************998765 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 2.9e-06
    TIGR01978 144 GfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvh 216
                    sGG + r  +   +l+eP++ +LDe    lD++a+  + +++    +  ++++ ++h + +l+++  d++ 
  MMETSP1061-20121228|39401_1 385 SLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLR---SYPHTVITVSHDRGFLNEVCSDTIE 454
                  57**********************************998887665...5567899**********99999886 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 1.3e-05
    TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghe 50 
                   + +L+++n  +++    a++G+nG+Gk tL + ++g+ 
  MMETSP1061-20121228|39401_1 573 AEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQL 611
                  5668999******************************75 PP

  == domain 4    score: 22.9 bits;  conditional E-value: 1.7e-07
    TIGR01978 145 fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGr 222
                   sGG k r     la  +P+l i+De    l +Da+ ++++ +++++    +ll+++h + ++++ + + + ++ +G+
  MMETSP1061-20121228|39401_1 680 LSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFK---GGLLVVSHDQYFVNA-TCNEIWIVEEGK 753
                  69*********************************999988888776...69*******999886.567788888887 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.028       1.8      14      34 ..     233     253 ..     220     259 .. 0.80
   2 !   23.2   0.0   1.5e-07   9.4e-06     109     147 ..     380     418 ..     360     443 .. 0.80
   3 ?   -0.5   0.0       2.7   1.7e+02      58     115 ..     453     512 ..     441     520 .. 0.81
   4 !   34.7   0.1   4.5e-11   2.8e-09       1     175 [.     577     736 ..     577     762 .. 0.77

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.028
    TIGR01184  14 islighsgcgkstllnliagl 34 
                   ++ig  g gk+tlln ia  
  MMETSP1061-20121228|39401_1 233 YAIIGENGVGKTTLLNRIANW 253
                  689*************99976 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1.5e-07
    TIGR01184 109 dkrpeqlsggmkqrvaiaralsirpklllldepfgalda 147
                     ++ lsgg + rva+a +l i p++l+ldep   ld 
  MMETSP1061-20121228|39401_1 380 ASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDL 418
                  456789***************************999985 PP

  == domain 3    score: -0.5 bits;  conditional E-value: 2.7
    TIGR01184  58 vvfqnysllpwltvren.ialavdavlrdlskserreiveeh.ielvglreaadkrpeql 115
                  + f+n  l  ++  ++n + l  ++ ++++++ e  ++ ++h +e+++  +a+ kr + +
  MMETSP1061-20121228|39401_1 453 IEFKNKKLTYYRGNYDNfVKLKQEKLKNQMREYEAYKMKRDHmMEFIEKFRANAKRATIV 512
                  568999999999999995679999999999999999998777258898888888887765 PP

  == domain 4    score: 34.7 bits;  conditional E-value: 4.5e-11
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavile.gkeitepgpdrmvvfqnysllpwltvrenialavdavlrdlskserreiveehielvglreaad.krpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdv 175
                  l+++++ + +   i+l+g  g gk+tllnli g  +p +g+v+++ g         r+  f +      ++ r ++ l+  + + ++ +s +++++++ +   +++ a   k +  lsgg k rv+ a     rp+ll++de    l      +  + l++ +++ +   l+v+hd 
  MMETSP1061-20121228|39401_1 577 LQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNsGL--------RIGHFTQ-----HHSERFDLSLSAIENMLNIFNSAEDQVIRSFLGRFQIQGADAlKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLS----MDAVDALIQAIQDFKGGLLVVSHDQ 736
                  5778999999999****************************9986233........4444443.....3455666666555555566667778999*****999999866266678*************999**********876553....2344678888888888888888875 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0039      0.24      21      59 ..     217     255 ..     201     269 .. 0.81
   2 !   32.4   0.0   1.7e-10     1e-08     117     200 ..     363     442 ..     354     458 .. 0.81
   3 !   16.6   0.0   1.1e-05   0.00069      20      74 ..     573     628 ..     567     643 .. 0.83
   4 !   10.5   0.0   0.00078     0.049     137     221 ..     678     757 ..     654     773 .. 0.77

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0039
    TIGR03258  21 rvvlddlsleieaGellallGksGsGkttllravaGfvk 59 
                    +ld+  l+       a++G+ G Gkttll  +a +  
  MMETSP1061-20121228|39401_1 217 TSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIANWED 255
                  55677777788888889****************998755 PP

  == domain 2    score: 32.4 bits;  conditional E-value: 1.7e-10
    TIGR03258 117 ervadalklvqlsdaaarlp.aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdr 200
                   r +  l  +q++d  +  p + lsGG + rvala +l ++pd+l+ldep   ld +        l+a  r  p  tv+ v+hdr
  MMETSP1061-20121228|39401_1 363 SRATAILSGLQFTDDMQASPiKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVL----WLEAHLRSYP-HTVITVSHDR 442
                  57888899999999888888357*******************************976433....3444445556.4899999998 PP

  == domain 3    score: 16.6 bits;  conditional E-value: 1.1e-05
    TIGR03258  20 arvvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllva.drdlth 74 
                  a+ +l+++ + ++    +allG  G Gkttll ++ G +++  G ++v  +  + h
  MMETSP1061-20121228|39401_1 573 AEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNsGLRIGH 628
                  66778889999999999************************999998851455555 PP

  == domain 4    score: 10.5 bits;  conditional E-value: 0.00078
    TIGR03258 137 aqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslial 221
                    lsGGq+ rv++a     rp++l++de    l  +   ++ + ++ ++       +l+v+hd+    +  + i ++ eG+  ++
  MMETSP1061-20121228|39401_1 678 RYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKG-----GLLVVSHDQYFVNATCNEIWIVEEGKASRF 757
                  469************999**********9998888777777777766654.....457788999888888888888888887665 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   0.0      0.06       3.7     451     497 ..     203     248 ..     197     256 .. 0.87
   2 !   19.9   0.0   7.4e-07   4.6e-05     587     643 ..     384     440 ..     378     472 .. 0.88
   3 !   21.6   0.0   2.3e-07   1.4e-05     452     511 ..     551     619 ..     545     629 .. 0.82
   4 !   16.3   0.0   8.9e-06   0.00055     589     670 ..     680     763 ..     676     768 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.06
    TIGR03797 451 aievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllr 497
                  +++v+r+t    ++g+  Ld+  lk       ai+G+ G GK tll 
  MMETSP1061-20121228|39401_1 203 DVNVQRITLSL-ENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLN 248
                  57888999888.78899999999999999999*************95 PP

  == domain 2    score: 19.9 bits;  conditional E-value: 7.4e-07
    TIGR03797 587 gtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAH 643
                  ++lSGG r R+ +A +l   P il++DE T  LD ++     + l     t i + H
  MMETSP1061-20121228|39401_1 384 KSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSYPHTVITVSH 440
                  68********************************98888888888877777777777 PP

  == domain 3    score: 21.6 bits;  conditional E-value: 2.3e-07
    TIGR03797 452 ievdrvtFrY.........ekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvl 511
                  i+++ vtF Y         +++++  L+++++  ++   +a+ Ga G GK tll l++g  +P +Gsv+
  MMETSP1061-20121228|39401_1 551 IAINDVTFDYsleqsdgtkKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVV 619
                  67888888883332222223456789*****************************************97 PP

  == domain 4    score: 16.3 bits;  conditional E-value: 8.9e-06
    TIGR03797 589 lSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtRiviAHRLSTir.nadrilvleeGrvve.qGsyee 670
                  lSGGQ+ R+  A    ++P++l++DE    L   +  + +++++ +k   +v+ H    ++  ++ i ++eeG+     G++++
  MMETSP1061-20121228|39401_1 680 LSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGGLLVVSHDQYFVNaTCNEIWIVEEGKASRfDGTFDD 763
                  9******************************************************998885379*********98764577775 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0      0.49        30      35      54 ..     231     250 ..     203     259 .. 0.78
   2 !   30.5   0.0   8.2e-10   5.1e-08     122     221 ..     358     454 ..     343     457 .. 0.88
   3 !   17.2   0.0   9.3e-06   0.00058       2      69 ..     551     622 ..     550     637 .. 0.81
   4 !   10.2   0.0    0.0013     0.078     129     214 ..     659     741 ..     642     750 .. 0.69

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.49
    TIGR02324  35 elvalsGksGaGkstllksl 54 
                     a++G+ G Gk tll  +
  MMETSP1061-20121228|39401_1 231 RRYAIIGENGVGKTTLLNRI 250
                  55789************876 PP

  == domain 2    score: 30.5 bits;  conditional E-value: 8.2e-10
    TIGR02324 122 reearakakellarlniperLWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrelvadrele 221
                   ++a+++a+++l+ l+ ++ + + +    sGG + Rv +a +l+ +  iL+LdePt  Ld    ++v+ l +++++   ++i++ hd+   + v+  ++e
  MMETSP1061-20121228|39401_1 358 ADTAQSRATAILSGLQFTDDMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLD---LEAVLWLEAHLRSYPHTVITVSHDRGFLNEVCSDTIE 454
                  468999***************************************999***********6...56789999999999999******99888877777666 PP

  == domain 3    score: 17.2 bits;  conditional E-value: 9.3e-06
    TIGR02324   2 levedlsktfilhqqgGvklp....vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrh 69 
                  + ++d++  + l q +G+k       l+++++ +++   +al G+ G Gk tll  + ++ +p +g+++v+ 
  MMETSP1061-20121228|39401_1 551 IAINDVTFDYSLEQSDGTKKReaeyLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNS 622
                  56677777778888888765422225899***************************************9986 PP

  == domain 4    score: 10.2 bits;  conditional E-value: 0.0013
    TIGR02324 129 akellarlniperLWslaPa.tfsGGekqRvniaraliadrPiLL.LdePtasLdaanrkvvvelikeakargaaligifhdeevrel 214
                   +++l r++i +   +l P    sGG k Rv  a    + rP LL +de    L      +v  li+ ++     l+ + hd+   ++
  MMETSP1061-20121228|39401_1 659 IRSFLGRFQI-QGADALKPMrYLSGGQKSRVSFAVLAYQ-RPHLLiIDEGSNHLSMD---AVDALIQAIQDFKGGLLVVSHDQYFVNA 741
                  5677788888.444555554157***********86666.89877258888888554...4566666666666677788888765554 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.0   0.0       1.6     1e+02       7      28 ..     225     246 ..     219     260 .. 0.78
   2 !   25.6   0.0   2.4e-08   1.5e-06     112     204 ..     372     460 ..     345     485 .. 0.73
   3 !    8.1   0.1    0.0055      0.34       1      38 [.     576     613 ..     576     635 .. 0.85
   4 !   23.9   0.0   8.1e-08     5e-06     125     224 ..     679     774 ..     637     779 .. 0.79

  Alignments for each domain:
  == domain 1    score: -0.0 bits;  conditional E-value: 1.6
    TIGR02770   7 lslkrgkvlalvGesGsGkslt 28 
                  l+    +  a++Ge G Gk++ 
  MMETSP1061-20121228|39401_1 225 LKFAYQRRYAIIGENGVGKTTL 246
                  5556667789*********975 PP

  == domain 2    score: 25.6 bits;  conditional E-value: 2.4e-08
    TIGR02770 112 LeeaeevlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGki 204
                  L+ ++ +  +    lsGG   Rv +a +ll+e+ +l+ DePt  lD+ + +    l  +lr +   +++ ++hD g + e+  + + +++ k+
  MMETSP1061-20121228|39401_1 372 LQFTDDMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLW---LEAHLR-SYPHTVITVSHDRGFLNEVCSDTIEFKNKKL 460
                  44444544444567********************************986544...334444.44567999******99999888776666665 PP

  == domain 3    score: 8.1 bits;  conditional E-value: 0.0055
    TIGR02770   1 lvqdvnlslkrgkvlalvGesGsGksltalailglldk 38 
                  l q++n+ l +   +al+G+ G Gk++    i+g l +
  MMETSP1061-20121228|39401_1 576 LLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRP 613
                  5799**********************988888887764 PP

  == domain 4    score: 23.9 bits;  conditional E-value: 8.1e-08
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkhettrk 224
                   lsGG   Rv  a+    ++ lli De +  l +++    ++ l +  +++  g+l+++hD   v    +e+ ++e+Gk        + +++ + + trk
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDA----VDALIQAIQDFKGGLLVVSHDQYFVNATCNEIWIVEEGKASRFDGTFDDYKSHTAKKTRK 774
                  49****************************998765....4556666778899*************************9877777777777666666665 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.0   6.2e-08   3.9e-06     617     673 ..     385     441 ..     373     476 .. 0.90
   2 !   16.6   0.0   6.4e-06    0.0004     490     541 ..     570     621 ..     548     636 .. 0.83
   3 !   18.8   0.0   1.4e-06   8.7e-05     616     699 ..     678     763 ..     638     771 .. 0.76

  Alignments for each domain:
  == domain 1    score: 23.2 bits;  conditional E-value: 6.2e-08
    TIGR00958 617 qlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqesksaksrtvlliahr 673
                   lsgG + r+A+A  L+ +P +L+LDe t  LD e    l++  +++ +tv+ + h 
  MMETSP1061-20121228|39401_1 385 SLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSYPHTVITVSHD 441
                  69****************************************999********9985 PP

  == domain 2    score: 16.6 bits;  conditional E-value: 6.4e-06
    TIGR00958 490 srpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllD 541
                  +r  + +l+ ++f l   + +al G +G+GK t   l+    +P +G+v++ 
  MMETSP1061-20121228|39401_1 570 KREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  4667789******************************************986 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 1.4e-06
    TIGR00958 616 sqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa.eveqllqesksaksrtvlliahrLstvekadkilvlkkgsvve.lGthkq 699
                    lsgGqk r+  A    ++P +Li+De    L   +v++l+q+ + +k+  +++  ++  +   +++i ++++g+  +  Gt+++
  MMETSP1061-20121228|39401_1 678 RYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMdAVDALIQAIQDFKGGLLVVSHDQYFVNATCNEIWIVEEGKASRfDGTFDD 763
                  689******************************997889999999999987666666677777899*********76652466665 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0      0.12       7.7     353     386 ..     217     250 ..     179     258 .. 0.79
   2 !   21.3   0.0   3.1e-07   1.9e-05     475     511 ..     384     420 ..     361     440 .. 0.90
   3 !   21.2   0.0   3.4e-07   2.1e-05     338     408 ..     551     630 ..     507     662 .. 0.76
   4 !   11.5   0.0   0.00029     0.018     476     551 ..     679     753 ..     675     764 .. 0.86

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.12
    TIGR02204 353 qkaldgldltvrpGetvalvGPsGaGkstllell 386
                  +  ld+ dl+    ++ a++G  G Gk+tll+ +
  MMETSP1061-20121228|39401_1 217 TSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRI 250
                  4567888899999999**************9866 PP

  == domain 2    score: 21.3 bits;  conditional E-value: 3.1e-07
    TIGR02204 475 vtLsGGqkqriaiarailkdapiLLLdeatsaLdaes 511
                   +LsGG + r+a+a ++l +  iL+Lde t+ Ld e+
  MMETSP1061-20121228|39401_1 384 KSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEA 420
                  57********************************876 PP

  == domain 3    score: 21.2 bits;  conditional E-value: 3.4e-07
    TIGR02204 338 iefeevkfayP........arpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailld.Gvdlreld 408
                  i++++v+f y         +r  +  l+++++ +++  ++al G  G Gk+tll+l++    P  G++ ++ G+ + ++ 
  MMETSP1061-20121228|39401_1 551 IAINDVTFDYSleqsdgtkKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNsGLRIGHFT 630
                  556666666642222222145566789****************************************9986477776554 PP

  == domain 4    score: 11.5 bits;  conditional E-value: 0.00029
    TIGR02204 476 tLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvl.kadrivvldkGr 551
                   LsGGqk r++ a    +   +L++de  + L  ++ +++ qa++    g   lv++h    v   ++ i ++++G+
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGG--LLVVSHDQYFVNaTCNEIWIVEEGK 753
                  59***********99999999***********999999999999988665..6899998777752678899999887 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.4   0.0    0.0012     0.072     469     522 ..     199     252 ..     189     260 .. 0.90
   2 !   18.7   0.0   1.7e-06    0.0001     609     667 ..     383     440 ..     370     474 .. 0.78
   3 !   16.5   0.0   7.9e-06   0.00049     474     543 ..     551     631 ..     479     640 .. 0.78
   4 !   10.0   0.0   0.00077     0.048     611     686 ..     679     754 ..     659     767 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.4 bits;  conditional E-value: 0.0012
    TIGR01193 469 nlngdievndvsysyGygsevledislkikknekitlvGlsGsGkstlakllvk 522
                    + d++v++++ s   g+++l++ +lk   +++ +++G  G Gk+tl   + +
  MMETSP1061-20121228|39401_1 199 GKEMDVNVQRITLSLENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIAN 252
                  56789*******************************************876655 PP

  == domain 2    score: 18.7 bits;  conditional E-value: 1.7e-06
    TIGR01193 609 assisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvah 667
                    s+sgG + r+ala +ll + ++l+lde t +ldl      +e  l+    t+i v+h
  MMETSP1061-20121228|39401_1 383 IKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAV-LWLEAHLRSYPHTVITVSH 440
                  469********************************7433.3344555555666666666 PP

  == domain 3    score: 16.5 bits;  conditional E-value: 7.9e-06
    TIGR01193 474 ievndvsysyGygse..........vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillng.kslkdidk 543
                  i +ndv+++y + ++          +l++i++ +++ +ki+l+G  G Gk+tl  l+++   +  G + +n+   + ++ +
  MMETSP1061-20121228|39401_1 551 IAINDVTFDYSLEQSdgtkkreaeyLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNSgLRIGHFTQ 631
                  5677777777664321111222223899***************************************99985145655555 PP

  == domain 4    score: 10.0 bits;  conditional E-value: 0.00077
    TIGR01193 611 sisgGqkqrlalarallsdskvlildestsnldlltekkivenllklkdktiifvah.rlsvakksdkiivldeGki 686
                   +sgGqk r+++a       ++li+de + +l +     +++ +  +k   ++ v+h +  v    ++i +++eGk 
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKG-GLLVVSHdQYFVNATCNEIWIVEEGKA 754
                  59************99******************999999999999965.556666625678888999999999996 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.4   0.0      0.07       4.4     427     498 ..     167     249 ..      95     258 .. 0.69
   2 !   10.2   0.0   0.00063     0.039     583     640 ..     385     442 ..     371     447 .. 0.87
   3 ?   -1.3   0.0       1.9   1.2e+02     289     356 ..     457     522 ..     442     558 .. 0.76
   4 !   11.6   0.3   0.00024     0.015     464     509 ..     572     618 ..     479     633 .. 0.89
   5 !   29.3   0.0     1e-09   6.4e-08     582     640 ..     678     736 ..     669     741 .. 0.94

  Alignments for each domain:
  == domain 1    score: 3.4 bits;  conditional E-value: 0.07
    TIGR00954 427 kesaeee.srkselvag..........rgkveaqdngikfeniplvtPegdvlieeLsfevksGnhlLiiGPnGcGKsslfRi 498
                   e+++ + +++ e+ +             + + ++  + ++ i l   +g  l+++  ++    +   iiG nG GK  l   
  MMETSP1061-20121228|39401_1 167 LEKSRRDlGKQIERQEIstkagvsamiLPTTKGKEMDVNVQRITLSLENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNR 249
                  333333322222222112233342222223344555667777777777888888888888888889999*******9998644 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00063
    TIGR00954 583 vLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrk 640
                   LsgG + R+a+A  +   P   +LDE t+ + ++    l  +++++  t+++vsh +
  MMETSP1061-20121228|39401_1 385 SLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSYPHTVITVSHDR 442
                  69****************************875555555557899***********75 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 1.9
    TIGR00954 289 sEEiAfyqGnkvEkekvkesfekLveklnkvilvrfiydlledfvlKYvwsavGlvlvsipildktkk 356
                  +  + +y+Gn  +  k+k+  ekL +++++    ++  d + +f+ K+ ++a    +v + i  ++k 
  MMETSP1061-20121228|39401_1 457 NKKLTYYRGNYDNFVKLKQ--EKLKNQMREYEAYKMKRDHMMEFIEKFRANAKRATIVQSRIKAVNKM 522
                  5667788888876655554..78999999999999999999999999999888777777776666644 PP

  == domain 4    score: 11.6 bits;  conditional E-value: 0.00024
    TIGR00954 464 egdvlieeLsfevksGnhlLiiGPnGcGKsslfR.ilgelWPvyggl 509
                  e + l+++++f + + +++ ++G nG GK  l   i+g+l Pv g +
  MMETSP1061-20121228|39401_1 572 EAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNlIMGQLRPVAGSV 618
                  567899************************9876389******9855 PP

  == domain 5    score: 29.3 bits;  conditional E-value: 1e-09
    TIGR00954 582 dvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakevgitllsvshrk 640
                    LsgG+k R+++A l y +P+  ++DE  + +s+d  d+l +++++++  ll vsh +
  MMETSP1061-20121228|39401_1 678 RYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGGLLVVSHDQ 736
                  679******************************************************75 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.75        46     445     501 ..     190     248 ..     164     267 .. 0.75
   2 !   27.9   0.0   2.4e-09   1.5e-07     593     656 ..     385     446 ..     374     481 .. 0.77
   3 !    8.8   0.0    0.0015     0.093     464     517 ..     568     621 ..     513     650 .. 0.84
   4 !   15.6   0.0   1.3e-05   0.00083     594     670 ..     680     755 ..     674     772 .. 0.84

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.75
    TIGR01846 445 gkaalpelkG...aiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltk 501
                  +++ lp+ kG   ++++++i++  ++  +++l++  l+ +  +   i+G+ G Gk+tl  
  MMETSP1061-20121228|39401_1 190 SAMILPTTKGkemDVNVQRITLSLEN-GTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLN 248
                  44556777773334788888887755.5678999999999999*************9854 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 2.4e-09
    TIGR01846 593 alsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvr 656
                  +lsGG r r+ala +l+ +P il+lde t  ld e+   +  +lr+     tvi+++h    + 
  MMETSP1061-20121228|39401_1 385 SLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRS--YPHTVITVSHDRGFLN 446
                  69********************************998888888886..5679999999655544 PP

  == domain 3    score: 8.8 bits;  conditional E-value: 0.0015
    TIGR01846 464 rykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvd 517
                    k+++  +l+++++ + +   i + G  G Gk+tl  l+     P  G v+v+
  MMETSP1061-20121228|39401_1 568 TKKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  445677789*******************************99999****99996 PP

  == domain 4    score: 15.6 bits;  conditional E-value: 1.3e-05
    TIGR01846 594 lsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvr.aadrilvlekGkiv 670
                  lsGGq+ r++ a    + P++li+de    l +++ +++ + +++   g   ++++h    v  ++++i ++e+Gk  
  MMETSP1061-20121228|39401_1 680 LSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGGL--LVVSHDQYFVNaTCNEIWIVEEGKAS 755
                  9**********************************999999999987764..45566666664279*********965 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0     0.012      0.75     332     381 ..     204     252 ..     195     258 .. 0.82
   2 !   19.4   0.0     1e-06   6.4e-05     470     505 ..     385     420 ..     366     440 .. 0.89
   3 !   17.7   0.0   3.4e-06   0.00021     346     399 ..     574     628 ..     548     659 .. 0.80
   4 !    9.3   0.0    0.0012     0.074     470     545 ..     679     753 ..     669     767 .. 0.79

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.012
    TIGR02203 332 vefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpR 381
                  v+++ +t    +++++ ld+ +lk +  ++ a++G  G Gk+tl+n ++ 
  MMETSP1061-20121228|39401_1 204 VNVQRITLSL-ENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIAN 252
                  5666666665.4678899999***********************998865 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1e-06
    TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDnes 505
                   LsGG R R+a+a +ll +  iL+LDe t  LD e+
  MMETSP1061-20121228|39401_1 385 SLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEA 420
                  69*******************************997 PP

  == domain 3    score: 17.7 bits;  conditional E-value: 3.4e-06
    TIGR02203 346 realdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillD.gvdlad 399
                     l++i++ +++   +al G  G Gk+tl+nl+   + p +G+++++ g  + +
  MMETSP1061-20121228|39401_1 574 EYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNsGLRIGH 628
                  44699**************************************999863555555 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 0.0012
    TIGR02203 470 kLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiek.aDrivvlddGk 545
                   LsGGq+ R++ a   ++   +Li+De    L  ++  ++ +a++ +  g   lv++h    ++   ++i ++++Gk
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGG--LLVVSHDQYFVNAtCNEIWIVEEGK 753
                  59***************************999887766666666655443..4788887776654157777777776 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0       0.7        44      22      51 ..     221     250 ..     204     281 .. 0.76
   2 !   23.2   0.0     1e-07   6.5e-06     115     231 ..     359     472 ..     347     525 .. 0.77
   3 ?    6.7   0.1     0.011      0.67      21      65 ..     577     621 ..     562     636 .. 0.86
   4 !   18.7   0.0   2.4e-06   0.00015     140     221 ..     679     756 ..     669     782 .. 0.83

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.7
    TIGR02314  22 dnvslfvpkgqifgvigasgagkstlircv 51 
                  d+ +l     + + +ig  g gk+tl+  +
  MMETSP1061-20121228|39401_1 221 DQGDLKFAYQRRYAIIGENGVGKTTLLNRI 250
                  55566666677899***********98544 PP

  == domain 2    score: 23.2 bits;  conditional E-value: 1e-07
    TIGR02314 115 ekikrkvtellalvglsdkkdsyp.snlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifsh 231
                  +  + + t +l+ + ++d  ++ p   lsgg + rva+a +l  ep +l+ de t  ld     ++l l     r    t++ ++h+   + ++c      ++ +l       + f +
  MMETSP1061-20121228|39401_1 359 DTAQSRATAILSGLQFTDDMQASPiKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLE---AVLWL-EAHLRSYPHTVITVSHDRGFLNEVCSDTIEFKNKKLTYYRGNYDNFVK 472
                  556788999999999999999999457********************************64...45554.445588889999999999999999988777777666655555555555 PP

  == domain 3    score: 6.7 bits;  conditional E-value: 0.011
    TIGR02314  21 ldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivd 65 
                  l+++++ + +   + ++ga g gk+tl+  +    +p  g+v+v+
  MMETSP1061-20121228|39401_1 577 LQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  778888888899999***************99999********97 PP

  == domain 4    score: 18.7 bits;  conditional E-value: 2.4e-06
    TIGR02314 140 nlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgelie 221
                   lsggqk rv+ a      p++l+ de +  l   +  ++++ +++        +l+++h+   v   c+e+ ++++g+   
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKG----GLLVVSHDQYFVNATCNEIWIVEEGKASR 756
                  59***********999999*************99998888888887765....5699*********************9755 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.26        16      16      45 ..     219     248 ..     204     258 .. 0.77
   2 !   22.4   0.0   1.3e-07     8e-06     384     438 ..     366     420 ..     340     441 .. 0.81
   3 ?    5.0   0.0     0.024       1.5       9      49 ..     569     609 ..     562     617 .. 0.82
   4 !   19.8   0.0     8e-07     5e-05     123     218 ..     661     753 ..     640     760 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.26
    TIGR02633  16 aldnidlklraGeivslcGenGaGkstlmk 45 
                   ld+ dlk       ++ GenG Gk+tl+ 
  MMETSP1061-20121228|39401_1 219 LLDQGDLKFAYQRRYAIIGENGVGKTTLLN 248
                  46677777777788899**********986 PP

  == domain 2    score: 22.4 bits;  conditional E-value: 1.3e-07
    TIGR02633 384 eeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGa 438
                  ++ ++ l+        pi +lsGG + +  la  ll++p +l+ldept  +d+ a
  MMETSP1061-20121228|39401_1 366 TAILSGLQFTDDMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEA 420
                  45556666666677789**********************************9977 PP

  == domain 3    score: 5.0 bits;  conditional E-value: 0.024
    TIGR02633   9 kkfggvkaldnidlklraGeivslcGenGaGkstlmkvlsg 49 
                  kk +    l++i++ l+    ++l G nG Gk+tl+ ++ g
  MMETSP1061-20121228|39401_1 569 KKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMG 609
                  5555566789999999999****************998765 PP

  == domain 4    score: 19.8 bits;  conditional E-value: 8e-07
    TIGR02633 123 ellrelkldasnvtrpvsdlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGq 218
                  ++l + +++  +  +p+  l +Gq+  v  a    ++ +lli+de s  l+ + ++ l++ i+d+k      + +sh    v+a +++i ++ +G+
  MMETSP1061-20121228|39401_1 661 SFLGRFQIQGADALKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQDFKGG---LLVVSHDQYFVNATCNEIWIVEEGK 753
                  45666777777888888888888888888888888888888888888888888888888888888753...4567888888888888888888876 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       4.6   2.9e+02      25      46 ..     225     246 ..     203     251 .. 0.75
   2 !   24.8   0.0   3.3e-08   2.1e-06     129     181 ..     379     431 ..     341     450 .. 0.80
   3 !   25.5   0.0   2.1e-08   1.3e-06      18     175 ..     575     719 ..     559     756 .. 0.75

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 4.6
    TIGR01288  25 ftiaagecfgllgpngagksti 46 
                  +  a    + ++g ng gk+t+
  MMETSP1061-20121228|39401_1 225 LKFAYQRRYAIIGENGVGKTTL 246
                  44556667899********997 PP

  == domain 2    score: 24.8 bits;  conditional E-value: 3.3e-08
    TIGR01288 129 advrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsl 181
                     ++ +lsgg + r++la++l+ +p++l+ldept  ld  a   +   lrs 
  MMETSP1061-20121228|39401_1 379 QASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSY 431
                  4568899********************************99987777778775 PP

  == domain 3    score: 25.5 bits;  conditional E-value: 2.1e-08
    TIGR01288  18 vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqf..dnldreftvrenllvfgryfglstreieevipslle.farleskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliw 175
                   +++++ f + +   + llg ng gk+t+  l++g   p  g + v +            +ig  +q   + +d+ +++ en+l             ++vi s+l  f    + a  ++  lsgg k r+++a    + p+lli+de +  l   a   + 
  MMETSP1061-20121228|39401_1 575 YLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNS-----G-----LRIGHFTQHhsERFDLSLSAIENMLNI------FNSAEDQVIRSFLGrFQIQGADALKPMRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALI 719
                  567889999999999***************************998753.....3.....345555554114577899999999853......33445789999886256666788899*****************************99998877765544 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.78        49      11      38 ..     222     249 ..     215     253 .. 0.77
   2 !   23.6   0.0   8.8e-08   5.5e-06      97     162 ..     354     418 ..     339     447 .. 0.74
   3 !   10.5   0.0   0.00081      0.05       9      53 ..     577     621 ..     569     635 .. 0.87
   4 ?    5.8   0.0     0.022       1.4     129     161 ..     679     711 ..     664     770 .. 0.75

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.78
    TIGR01186  11 dvdleieeGeiiviiGlsGsGkstlvrl 38 
                  + dl+ +    + iiG  G Gk+tl+  
  MMETSP1061-20121228|39401_1 222 QGDLKFAYQRRYAIIGENGVGKTTLLNR 249
                  5567777777789***********8754 PP

  == domain 2    score: 23.6 bits;  conditional E-value: 8.8e-08
    TIGR01186  97 ellkideqerkekalealklvdl.eeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldP 162
                   ll   ++  + +a   l  +++ ++ + +  + lsGG + rv la +l +ePd+l++de+   ld 
  MMETSP1061-20121228|39401_1 354 TLL--GADTAQSRATAILSGLQFtDDMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDL 418
                  344..44556777888888888845555555589***************************999994 PP

  == domain 3    score: 10.5 bits;  conditional E-value: 0.00081
    TIGR01186   9 vndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilid 53 
                  ++++++ +++   i ++G  G Gk+tl+ l+   + P aG + ++
  MMETSP1061-20121228|39401_1 577 LQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  5788999999999****************************9986 PP

  == domain 4    score: 5.8 bits;  conditional E-value: 0.022
    TIGR01186 129 elsGGmqqrvGlaralaaePdlllmdeafsald 161
                   lsGG++ rv  a    + P ll++de    l 
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLS 711
                  59**********9988899********765443 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0068      0.42      30      49 ..     233     252 ..     222     273 .. 0.90
   2 !   11.4   0.0   0.00055     0.034     103     197 ..     347     440 ..     333     450 .. 0.70
   3 !   13.5   0.0   0.00013    0.0079      20      61 ..     579     621 ..     562     639 .. 0.84
   4 ?    3.1   0.0       0.2        12     126     197 ..     662     734 ..     652     754 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0068
    TIGR02323  30 lgivGesGsGkstllkalaa 49 
                   +i+Ge G Gk+tll+ +a+
  MMETSP1061-20121228|39401_1 233 YAIIGENGVGKTTLLNRIAN 252
                  58**************9986 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00055
    TIGR02323 103 anigerllavgarhyGkiraaakwlekvei.daarikp.aafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarllllrglvrelglaviivth 197
                   ni erl  +ga    + ra+a  l+ ++  d  +  p +++sGG + r+ +a +l+ +p ++++ ept  l  ++a l l    +r    +vi v+h
  MMETSP1061-20121228|39401_1 347 NNIYERLTLLGA-DTAQSRATAI-LSGLQFtDDMQASPiKSLSGGWRMRVALAASLLIEPDILMLdEPTNHL-DLEAVLWLEAH-LRSYPHTVITVSH 440
                  688999999998.4455555554.444443133344553689*******************999999*9887.45555444433.3445556666655 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 0.00013
    TIGR02323  20 rvsf.lypGevlgivGesGsGkstllkalaarlladaGevtye 61 
                  +++f l     ++++G  G Gk+tll+ + ++l + aG+v  +
  MMETSP1061-20121228|39401_1 579 KINFgLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  588988899999**************************99765 PP

  == domain 4    score: 3.1 bits;  conditional E-value: 0.2
    TIGR02323 126 wlekveidaari.kpaa.fsGGmqqrlqiarnlvtrprlvfmeptGGlvsvqarllllrglvrelglaviivth 197
                  +l + +i+ a   kp   +sGG + r+  a     rp+l++++     +s++a   l+++ +++++   ++v+h
  MMETSP1061-20121228|39401_1 662 FLGRFQIQGADAlKPMRyLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQA-IQDFKGGLLVVSH 734
                  5666666654433886516**********************9877777888887666654.4567666666666 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.2   0.0     0.045       2.8     334     381 ..     203     250 ..     176     258 .. 0.76
   2 !   16.7   0.0   7.8e-06   0.00048     470     507 ..     384     421 ..     353     458 .. 0.85
   3 !   12.4   0.0   0.00016    0.0097     352     404 ..     578     631 ..     551     665 .. 0.86
   4 ?    1.9   0.0      0.22        14     471     509 ..     679     717 ..     645     739 .. 0.83

  Alignments for each domain:
  == domain 1    score: 4.2 bits;  conditional E-value: 0.045
    TIGR01192 334 avefrdisfefanssqgvrdvsfeakagqtvaivgptgagkttlinll 381
                  +v+ + i+  + n +  + +  ++    +  ai+g  g gkttl+n +
  MMETSP1061-20121228|39401_1 203 DVNVQRITLSLENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRI 250
                  5777777777777777766666666777889**************976 PP

  == domain 2    score: 16.7 bits;  conditional E-value: 7.8e-06
    TIGR01192 470 nrlsggerqrlaiarailknapilvldeatsaldvete 507
                  + lsgg r r+a+a ++l +  il+lde t  ld+e+ 
  MMETSP1061-20121228|39401_1 384 KSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAV 421
                  679********************************975 PP

  == domain 3    score: 12.4 bits;  conditional E-value: 0.00016
    TIGR01192 352 rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilid.gvdiatvtr 404
                  +++ f       +a++g  g gkttl+nl+     p +g ++++ g+ i   t+
  MMETSP1061-20121228|39401_1 578 QKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNsGLRIGHFTQ 631
                  67889999999****************************998854777776665 PP

  == domain 4    score: 1.9 bits;  conditional E-value: 0.22
    TIGR01192 471 rlsggerqrlaiarailknapilvldeatsaldvetear 509
                   lsgg++ r++ a    +   +l++de +  l +++   
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDA 717
                  59************999***********99998876443 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0       0.3        19    1218    1265 ..     204     250 ..     168     259 .. 0.77
   2 !    9.9   0.0   0.00036     0.023     549     581 ..     386     418 ..     375     522 .. 0.71
   3 !   20.9   0.1   1.8e-07   1.1e-05     441     636 ..     576     766 ..     571     776 .. 0.70

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.3
    TIGR01271 1218 mtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                   ++v+ +t    e+g ++l++  +     +r  ++g  g gk+tll  +
  MMETSP1061-20121228|39401_1  204 VNVQRITLS-LENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRI 250 
                   334455543.58899999988888888899999999999999999865 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00036
    TIGR01271 549 lsggqrarislaravykdadlylldspfsyldv 581
                  lsgg r r++la ++  + d+ +ld p ++ld+
  MMETSP1061-20121228|39401_1 386 LSGGWRMRVALAASLLIEPDILMLDEPTNHLDL 418
                  566666666666666666666666666666654 PP

  == domain 3    score: 20.9 bits;  conditional E-value: 1.8e-07
    TIGR01271 441 vlknislklekgqllavagstgsgkssllmmilgelepsegki.khsg.risfspqvs...wimpgtikdniifgl.sydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehlkka..dkilllhegs.cyfygtfselqa 636
                  +l++i++ l++   +a+ g+ g gk++ll +i+g+l p  g +   sg ri + +q     + +  +  +n++  + s ++   +s +   q++   al +             lsggq++r+s+a   y+   l ++d   ++l +       ++ +  +   k  +lv s+ +++ +a  + i ++ eg+ + f gtf + ++
  MMETSP1061-20121228|39401_1 576 LLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVvVNSGlRIGHFTQHHserFDLSLSAIENMLNIFnSAEDQVIRSFLGRFQIQGADALKP----------MRYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMD----AVDALIQAIQDFKGGLLVVSHDQYFVNAtcNEIWIVEEGKaSRFDGTFDDYKS 766
                  6899************************************9862456668987766531112333333344432220333334455555555544333322..........23699**********999******99*9999999874....45555556667788888888888776653367888888862568888887665 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4   0.4    0.0092      0.57     775     811 ..     216     252 ..     108     258 .. 0.51
   2 !    7.2   0.0    0.0028      0.17     189     244 ..     367     420 ..     315     439 .. 0.78
   3 !   12.8   0.0   5.5e-05    0.0034     694     812 ..     487     610 ..     459     637 .. 0.55
   4 ?    2.6   0.0     0.067       4.1     208     252 ..     678     722 ..     672     730 .. 0.83

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.0092
    TIGR00956 775 krvlLdevdGwvkPGkltALmGasGAGkttLlnvLae 811
                     lLd+ d  +   +  A++G+ G GkttLln +a+
  MMETSP1061-20121228|39401_1 216 GTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIAN 252
                  3457777777777777789**************9987 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0028
    TIGR00956 189 laiyGLshtkntkvGndlvRGvsGGerkRvsiaevlvakakiqcwDnatrGLDsat 244
                  +   GL+ t + +     ++ +sGG r Rv++a  l+ ++ i+++D+ t  LD   
  MMETSP1061-20121228|39401_1 367 AILSGLQFTDDMQA--SPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEA 420
                  44557777777665..4599999999999999999999999999999999999655 PP

  == domain 3    score: 12.8 bits;  conditional E-value: 5.5e-05
    TIGR00956 694 kgakkkgeilvfkkgelkkakkkeeeseskkndieagevlkstdltdeseevneeveeekesg..............eeifewrdltyevki.......kkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeR 812
                    ++k+++++ f ++   +ak++ +  +s+ + +++ +                e  e+ e++              + i  + d+t++  +       k e   lL++++  +   +  AL+Ga G GkttLln + + 
  MMETSP1061-20121228|39401_1 487 AYKMKRDHMMEFIEKFRANAKRA-TIVQSRIKAVNKMD---------------AEAPEPVEMEtvwrfsipsseplgRPIIAINDVTFDYSLeqsdgtkKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQ 610
                  22222222222222222222222.22222222222222...............2222222222344555555555559999999999988762222222456678******888888899***************98765 PP

  == domain 4    score: 2.6 bits;  conditional E-value: 0.067
    TIGR00956 208 RGvsGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkal 252
                  R +sGG++ Rvs a     +++++++D+ +  L       +++a+
  MMETSP1061-20121228|39401_1 678 RYLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAI 722
                  789*************************99987555555555555 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   7.3e-07   4.5e-05     156     224 ..     377     441 ..     345     449 .. 0.74
   2 ?    3.3   0.0      0.11       6.8      50      88 ..     587     625 ..     575     641 .. 0.75
   3 ?    4.1   0.0     0.064         4     164     242 ..     679     753 ..     671     763 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 7.3e-07
    TIGR03415 156 eWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshd 224
                  + +   ++ lsGG + rv la ++ +e dil++deP   ld      l   l    +   +t++ vshd
  MMETSP1061-20121228|39401_1 377 DMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHL----RSYPHTVITVSHD 441
                  455566789*******************************954443343333....3345788888888 PP

  == domain 2    score: 3.3 bits;  conditional E-value: 0.11
    TIGR03415  50 GeilvlmGlsGsGkssllravng.lnpvsrGkvlvkdedk 88 
                     + l+G  G Gk++ll  + g l pv  G+v v+ + +
  MMETSP1061-20121228|39401_1 587 SSKIALLGANGQGKTTLLNLIMGqLRPV-AGSVVVNSGLR 625
                  5556899************998725555.69999987755 PP

  == domain 3    score: 4.1 bits;  conditional E-value: 0.064
    TIGR03415 164 elsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGr 242
                   lsGG + rv +a        +l++de    l         d l++  + +k  ++ vshd        n+i i+e+G+
  MMETSP1061-20121228|39401_1 679 YLSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLS----MDAVDALIQAIQDFKGGLLVVSHDQYFVNATCNEIWIVEEGK 753
                  69**********975555566777899877664....5677999999999***********998888999999999997 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.13       7.9     370     385 ..     233     248 ..     211     252 .. 0.79
   2 ?    4.5   0.0     0.035       2.2     461     531 ..     377     443 ..     349     457 .. 0.77
   3 !   13.9   0.0   5.2e-05    0.0032     353     402 ..     573     622 ..     549     653 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.13
    TIGR01194 370 vyivGenGcGkstlik 385
                    i+GenG Gk+tl+ 
  MMETSP1061-20121228|39401_1 233 YAIIGENGVGKTTLLN 248
                  459**********975 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.035
    TIGR01194 461 dlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddr 531
                  d++ s   +ls G r r+al ++ l e  +l+lde +   d  +  v++ e    l+    t++ +shd  
  MMETSP1061-20121228|39401_1 377 DMQASPIKSLSGGWRMRVALAASLLIEPDILMLDEPTNHLD--LEAVLWLE--AHLRSYPHTVITVSHDRG 443
                  445567789**************************988777..45666655..567888888888888865 PP

  == domain 3    score: 13.9 bits;  conditional E-value: 5.2e-05
    TIGR01194 353 egfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldG 402
                    + l  i++ + +   + ++G nG Gk+tl+ l++G  +p  G ++++ 
  MMETSP1061-20121228|39401_1 573 AEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNS 622
                  4577889999999999999**************************99884 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00024     0.015       5      25 ..     232     252 ..     228     283 .. 0.87
   2 !   10.2   0.0    0.0016       0.1       3      26 ..     587     610 ..     585     617 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00024
    TIGR00231   5 kivivGhvdvGKstLlnsllk 25 
                  + +i+G+ +vGK+tLln+++ 
  MMETSP1061-20121228|39401_1 232 RYAIIGENGVGKTTLLNRIAN 252
                  568***************986 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.0016
    TIGR00231   3 eikivivGhvdvGKstLlnsllkn 26 
                    ki+++G  + GK+tLln + ++
  MMETSP1061-20121228|39401_1 587 SSKIALLGANGQGKTTLLNLIMGQ 610
                  579****************99875 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00075     0.047     175     197 ..     230     252 ..     128     256 .. 0.75
   2 !   10.3   0.0   0.00086     0.054     114     204 ..     518     616 ..     477     620 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00075
    TIGR03594 175 pikiaiiGrpNvGKStLvNallg 197
                  + + aiiG   vGK tL+N++ +
  MMETSP1061-20121228|39401_1 230 QRRYAIIGENGVGKTTLLNRIAN 252
                  56778888888888888888765 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.00086
    TIGR03594 114 vvNKvdnkkeeae.aaefyslGlgevlaiSaehgrgikdLldeileelpeeee.eeeeeee..........eepikiaiiGrpNvGKStLvNallgeervivs 204
                  +vNK+d ++ e   +++++++ +      S   gr i ++ d  ++   e+++ ++++e+e          +++ kia++G    GK tL+N ++g+ r ++ 
  MMETSP1061-20121228|39401_1 518 AVNKMDAEAPEPVeMETVWRFSIP----SSEPLGRPIIAINDVTFDYSLEQSDgTKKREAEyllqkinfglDNSSKIALLGANGQGKTTLLNLIMGQLRPVAG 616
                  566666665444324455555443....34444555666666555544444331333332233333444444489**********************998865 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.6   0.0   0.00023     0.014    1420    1478 ..     384     440 ..     365     453 .. 0.86
   2 ?    4.5   0.0     0.016      0.99     647     698 ..     570     621 ..     494     652 .. 0.62
   3 !    6.1   0.1    0.0052      0.33     646     786 ..     569     705 ..     528     757 .. 0.65

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00023
    TIGR00957 1420 enlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiah 1478
                   + ls g r  v la +ll    il+lde t  +dle+   +++ +r+     tv+t++h
  MMETSP1061-20121228|39401_1  384 KSLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEAVLWLEAHLRSYP--HTVITVSH 440 
                   579999*******************************999999999864..57888888 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.016
    TIGR00957 647 ardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalk 698
                   r+    l+ +++ + + + +a++g  g gk++ll  +++++  v g v ++
  MMETSP1061-20121228|39401_1 570 KREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  3334444556666666666666666666666666666666666666655543 PP

  == domain 3    score: 6.1 bits;  conditional E-value: 0.0052
    TIGR00957 646 wardepptlngltlsipegalvavvgqvgcgkssllsallaemdkvegkvalkgsva..yvpqqawiqnd...slrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysdadiylldd 786
                    r+    l+ +++ + + + +a++g  g gk++ll  +++++  v g v ++  +   +  q    + d   s  en+l    + ++   +v++  ++l  ++i  + d     +    lsggqk rvs+a   y    + ++d+
  MMETSP1061-20121228|39401_1 569 KKREAEYLLQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVNSGLRigHFTQHHSERFDlslSAIENMLN---IFNSAEDQVIR--SFLGRFQIQ-GADAL---KPMRYLSGGQKSRVSFAVLAYQRPHLLIIDE 705
                  455566678888888888888888888888888888888888888888888776543002233222221110022233332...22222223333..244444443.22222...2223578888888888877777777777776 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0       2.9   1.8e+02     943     974 ..     217     248 ..     207     251 .. 0.81
   2 ?    2.5   0.0     0.039       2.5    2070    2105 ..     385     420 ..     346     452 .. 0.68
   3 !   11.8   0.0   6.2e-05    0.0039     947     990 ..     578     621 ..     571     659 .. 0.86
   4 ?    0.9   0.0      0.12       7.5    2071    2159 ..     680     766 ..     666     771 .. 0.78

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 2.9
    TIGR01257 943 rpavdrlnitfyenqitaflghngagktttls 974
                     +d+ ++ f  ++  a++g ng gktt l 
  MMETSP1061-20121228|39401_1 217 TSLLDQGDLKFAYQRRYAIIGENGVGKTTLLN 248
                  5566777888888888999*********9886 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.039
    TIGR01257 2070 tysggnkrklstaialigcpplvlldepttgmdpqa 2105
                   + sgg + +++ a +l+  p +++ldept  +d +a
  MMETSP1061-20121228|39401_1  385 SLSGGWRMRVALAASLLIEPDILMLDEPTNHLDLEA 420 
                   457777777777777777777777777777777665 PP

  == domain 3    score: 11.8 bits;  conditional E-value: 6.2e-05
    TIGR01257 947 drlnitfyenqitaflghngagktttlsiltgllpptsgtvlvg 990
                  +++n  + ++   a+lg ng gktt l ++ g l p +g+v+v 
  MMETSP1061-20121228|39401_1 578 QKINFGLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  5678888888999***************************9985 PP

  == domain 4    score: 0.9 bits;  conditional E-value: 0.12
    TIGR01257 2071 ysggnkrklstaialigcpplvlldepttgmdpqarrmlwntivsiiregravvltshsmeecealctrlaimvkg.afqclgtiqhlks 2159
                    sgg+k ++s a+     p l+++de +  +  +a   l ++i      +  +++ sh    ++a c  + i+  g a +  gt +  ks
  MMETSP1061-20121228|39401_1  680 LSGGQKSRVSFAVLAYQRPHLLIIDEGSNHLSMDAVDALIQAIQD---FKGGLLVVSHDQYFVNATCNEIWIVEEGkASRFDGTFDDYKS 766 
                   59**************************99999998877665544...345566779999999999999999888733455567666665 PP

>> TIGR00929  VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.5   0.0    0.0069      0.43     441     458 ..     234     251 ..     232     253 .. 0.90
   2 !   10.7   0.0   0.00038     0.024     441     466 ..     591     616 ..     585     623 .. 0.85
   3 ?   -3.6   0.0       7.8   4.9e+02     744     767 ..     636     658 ..     631     659 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0069
    TIGR00929 441 lIfGptgsGKTvllnfll 458
                  +I+G++g GKT+lln ++
  MMETSP1061-20121228|39401_1 234 AIIGENGVGKTTLLNRIA 251
                  7*************9876 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 0.00038
    TIGR00929 441 lIfGptgsGKTvllnfllaqlqkykp 466
                  +++G++g+GKT+lln+++ ql+  ++
  MMETSP1061-20121228|39401_1 591 ALLGANGQGKTTLLNLIMGQLRPVAG 616
                  679***************99986655 PP

  == domain 3    score: -3.6 bits;  conditional E-value: 7.8
    TIGR00929 744 vaelnLeggmkeylrvlSsdkesv 767
                   ++l+L++ ++++l +++s +++v
  MMETSP1061-20121228|39401_1 636 RFDLSLSA-IENMLNIFNSAEDQV 658
                  5799***7.9*********99987 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.2   0.0    0.0054      0.34     119     143 ..     228     251 ..     200     257 .. 0.75
   2 !    9.6   0.1    0.0021      0.13     114     173 ..     578     640 ..     568     647 .. 0.76

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0054
    TIGR00157 119 klkkrisvfaGqSGVGKSSLiNlld 143
                  +++ r   ++G+ GVGK  L+N++ 
  MMETSP1061-20121228|39401_1 228 AYQRR-YAIIGENGVGKTTLLNRIA 251
                  44444.4569*************96 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0021
    TIGR00157 114 eelkeklkkrisv.faGqSGVGKSSLiNlldpevkqkvke..vseklklGkhTTtsvelfhlq 173
                  ++++  l ++  + + G  G GK  L+Nl+ ++++       v + l+ G+ T  ++e f+l+
  MMETSP1061-20121228|39401_1 578 QKINFGLDNSSKIaLLGANGQGKTTLLNLIMGQLRPVAGSvvVNSGLRIGHFTQHHSERFDLS 640
                  5566666655444278*****************9877665115667889*********99985 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   2.9   5.4e-06   0.00033     110     220 ..     123     252 ..      42     264 .. 0.71
   2 ?   -0.4   1.1       3.2     2e+02      61     129 ..     276     355 ..     265     393 .. 0.62
   3 ?    4.4   0.0      0.11       6.9     194     213 ..     583     602 ..     559     605 .. 0.73

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.4e-06
    TIGR03499 110 e..................eelrkelkalkellekqlselaleeedperakllkklleagvseel.arelleklkekedaeeareklreaLekklsvkkeedeilekggviaLvGptGvGKTTTlAKLAa 220
                  +                  ++   ++ a ++  +++ ++ +++e +++r++l k+ +++++s +  + +++  + + ++ + +++ +   Le+  s  ++ d     ++ +a +G  GvGKTT l ++A 
  MMETSP1061-20121228|39401_1 123 RnggddndesmwstkgkikASSNTQIGAYHDKTSSKDKRKQRQELEKSRRDLGKQIERQEISTKAgVSAMILPTTKGKEMDVNVQRITLSLENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIAN 252
                  11222222223455555557777777777777777777766699*****************9875344444444556999999999*********99999999999999**************9999996 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 3.2
    TIGR03499  61 seeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae...........eelrkelkalkellekqls 129
                  +ee ++  a+ ea+ ++ s  +e++e  ++ e k  e ++ +e+++ e++           ++++++l++l+++ e+++ 
  MMETSP1061-20121228|39401_1 276 NEETTVLDAVLEADIERISLLKEEKEITARLEGKRVEGNNGHEDETVESRkkrliesaeddKKFSEDLEKLNNIYERLTL 355
                  45555555555555566666666666666666666666666666666655666666777778888888888888877765 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.11
    TIGR03499 194 ilekggviaLvGptGvGKTT 213
                   l++   iaL+G  G GKTT
  MMETSP1061-20121228|39401_1 583 GLDNSSKIALLGANGQGKTT 602
                  44555579***********9 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   0.0      0.15       9.5     179     198 ..     231     250 ..     191     286 .. 0.89
   2 !   10.3   0.0     0.001     0.063     160     212 ..     566     621 ..     503     634 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.15
    TIGR03819 179 lallvsGgtGsGkttLLsal 198
                  + + + G  G GkttLL+ +
  MMETSP1061-20121228|39401_1 231 RRYAIIGENGVGKTTLLNRI 250
                  557799***********865 PP

  == domain 2    score: 10.3 bits;  conditional E-value: 0.001
    TIGR03819 160 agaiapevaelleai...vaarlallvsGgtGsGkttLLsalLalvaedeRivlve 212
                   g+ ++e++ ll++i   +++  ++ + G+ G GkttLL+ +++++++    v+v+
  MMETSP1061-20121228|39401_1 566 DGTKKREAEYLLQKInfgLDNSSKIALLGANGQGKTTLLNLIMGQLRPVAGSVVVN 621
                  4666777777777775556777788889****************999887777775 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.8   0.0    0.0062      0.39     295     382 ..     165     251 ..     140     274 .. 0.70
   2 ?    5.7   0.0     0.013       0.8     351     385 ..     577     611 ..     570     621 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.0062
    TIGR03925 295 edla.alealveaiaaaaegekap.kvrlLPerlelsalaekeaeerervllGleesdlapvaldfaeephllvlGdsesGktallraia 382
                  ++l  + ++l+++i+++  ++ka  +  +LP++ + ++++   + +r ++ l  + s l+   l+fa ++   ++G+++ Gkt+ll+ ia
  MMETSP1061-20121228|39401_1 165 QELEkSRRDLGKQIERQEISTKAGvSAMILPTT-KGKEMD--VNVQRITLSLENGTSLLDQGDLKFAYQRRYAIIGENGVGKTTLLNRIA 251
                  455545555555555555444443133334433.344443..24455555555556678888899*********************9997 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.013
    TIGR03925 351 lapvaldfaeephllvlGdsesGktallraiaeev 385
                  l+ + + +++++++  lG+++ Gkt+ll+ i+ ++
  MMETSP1061-20121228|39401_1 577 LQKINFGLDNSSKIALLGANGQGKTTLLNLIMGQL 611
                  7778888999999*****************99877 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8   0.0     0.026       1.6       2      22 ..     232     252 ..     231     257 .. 0.87
   2 ?    5.7   0.1     0.055       3.4       2      23 ..     589     610 ..     588     612 .. 0.91

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.026
    TIGR02528   2 rimliGsvgcGkttLtqaLkg 22 
                  r ++iG+ g GkttL +++ +
  MMETSP1061-20121228|39401_1 232 RYAIIGENGVGKTTLLNRIAN 252
                  7789*************9987 PP

  == domain 2    score: 5.7 bits;  conditional E-value: 0.055
    TIGR02528   2 rimliGsvgcGkttLtqaLkge 23 
                  +i+l+G  g GkttL + ++g+
  MMETSP1061-20121228|39401_1 589 KIALLGANGQGKTTLLNLIMGQ 610
                  89**************998875 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.9   0.0    0.0029      0.18      81     103 ..     232     254 ..     165     261 .. 0.66
   2 ?    5.0   0.0     0.042       2.6      78     110 ..     586     618 ..     553     624 .. 0.69

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 0.0029
    TIGR00064  81 villvGvNGvGKTttiaKlakll 103
                   + ++G NGvGKTt + ++a++ 
  MMETSP1061-20121228|39401_1 232 RYAIIGENGVGKTTLLNRIANWE 254
                  4789****************975 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.042
    TIGR00064  78 kpnvillvGvNGvGKTttiaKlakllkkegkkv 110
                  +   i l G NG GKTt +  +  +l     +v
  MMETSP1061-20121228|39401_1 586 NSSKIALLGANGQGKTTLLNLIMGQLRPVAGSV 618
                  45557889*********8877766665555555 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   0.0    0.0037      0.23       3      22 ..     233     252 ..     231     256 .. 0.89
   2 ?    7.0   0.1     0.011      0.71       2      24 ..     589     611 ..     588     634 .. 0.88

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.0037
    TIGR00436   3 vailGrpnvGKSTLlNkllg 22 
                   ai+G   vGK TLlN++ +
  MMETSP1061-20121228|39401_1 233 YAIIGENGVGKTTLLNRIAN 252
                  59***************987 PP

  == domain 2    score: 7.0 bits;  conditional E-value: 0.011
    TIGR00436   2 fvailGrpnvGKSTLlNkllgqk 24 
                  ++a+lG    GK TLlN ++gq 
  MMETSP1061-20121228|39401_1 589 KIALLGANGQGKTTLLNLIMGQL 611
                  79******************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (788 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       416  (0.101414); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        77  (0.0187713); expected 4.1 (0.001)
Passed Fwd filter:                        66  (0.0160897); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              66  [number of targets reported over threshold]
# CPU time: 1.48u 0.16s 00:00:01.64 Elapsed: 00:00:00.95
# Mc/sec: 1094.81
//
Query:       MMETSP1061-20121228|39412_1  [L=189]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (189 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       239  (0.0582643); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 959.46
//
Query:       MMETSP1061-20121228|39427_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       219  (0.0533886); expected 82.0 (0.02)
Passed bias filter:                      186  (0.0453437); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|39438_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.10s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 2349.41
//
Query:       MMETSP1061-20121228|39450_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 1077.91
//
Query:       MMETSP1061-20121228|39459_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.17
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|39464_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.26
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|39470_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|39475_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 401.97
//
Query:       MMETSP1061-20121228|39477_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-10   36.6   1.3    5.7e-10   36.5   0.9    1.0  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
  ------ inclusion threshold ------
      0.031   11.1   0.2      0.029   11.3   0.1    1.0  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family


Domain annotation for each model (and alignments):
>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.9   2.8e-13   5.7e-10      18      78 ..       1      61 [.       1      62 [] 0.97

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 2.8e-13
    TIGR00895 18 vlilsflivlvdGldllvlgfaapalskewgldkvelGfllsagLiGmvlGallfgplaDr 78
                 v++ + l +  dG+++++l+f    l+  wgl+++ + +++s+  +G+v+G+l+++pl Dr
  MMETSP1061-20121228|39477_1  1 VILACGLCFASDGMEIQLLSFLTVILKGRWGLSEARADSVVSVVFAGAVVGSLVLTPLGDR 61
                 57889999****************************************************9 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   1.4e-05     0.029      31     300 ..      19      61 ..       1      62 [] 0.57

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 1.4e-05
    TIGR00891  31 valvlaevaeefdrttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvvvnvlgdsWriLfflsilpiilalflrkrvpeaevwkeklkakklvktrvdkvlggealvkaivktkavamkrsvqkrwllfvyLvvllvaanylshaiqdllPtyLkadlglskdtvavivvvsniGaivGglvfGtlsev 300
                  ++                                                                                                                                                                                                                                    l  +Lk   gls+  +  +v v   Ga+vG+lv   l+++
  MMETSP1061-20121228|39477_1  19 LSF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTVILKGRWGLSEARADSVVSVVFAGAVVGSLVLTPLGDR 61 
                  443...................................................................................................................................................................................................................................4455666666666666666666666666666666655554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 371.97
//
Query:       MMETSP1061-20121228|39466_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2485.04
//
Query:       MMETSP1061-20121228|39476_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 913.77
//
Query:       MMETSP1061-20121228|39488_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 406.97
//
Query:       MMETSP1061-20121228|39493_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 335.97
//
Query:       MMETSP1061-20121228|39497_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 567.55
//
Query:       MMETSP1061-20121228|39551_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0039   14.0   0.1     0.0041   13.9   0.1    1.1  1  TIGR02666 moaA: molybdenum cofactor biosynthesis protein A


Domain annotation for each model (and alignments):
>> TIGR02666  moaA: molybdenum cofactor biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1     1e-06    0.0041     219     283 ..      15      76 ..       3     103 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1e-06
    TIGR02666 219 afgelepveskeekepaeaarvkleggkgeiGlIspvskkFCetCnrlRltadgklklCLfaeee 283
                  +  e e+v s+ +++   + + ++++++ +  ++    ++F ++C+r+Rl    ++klCLf+ ++
  MMETSP1061-20121228|39551_1  15 RRRENENVLSHPQSN---QHQHQHQHQHHNRCVLLFDMDCFYAQCERVRLGLPLDVKLCLFQWNS 76 
                  333444444444332...2222344455555666667799*********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 743.31
//
Query:       MMETSP1061-20121228|39559_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1137.62
//
Query:       MMETSP1061-20121228|39560_1  [L=232]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (232 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1531.07
//
Query:       MMETSP1061-20121228|39566_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 327.33
//
Query:       MMETSP1061-20121228|39570_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-12   45.7   0.1    1.8e-06   25.5   0.0    2.0  2  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
    1.9e-09   33.8   0.0    2.5e-09   33.4   0.0    1.1  1  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    2.6e-07   28.3   0.1    4.3e-07   27.6   0.1    1.4  1  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
    2.8e-05   20.3   0.2    3.3e-05   20.1   0.1    1.0  1  TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
     0.0002   19.8   0.0    0.00035   19.0   0.0    1.4  1  TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF
     0.0014   15.1   0.0     0.0017   14.9   0.0    1.1  1  TIGR00990 3a0801s09: mitochondrial precursor proteins import receptor


Domain annotation for each model (and alignments):
>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.5   0.0   2.6e-09   1.8e-06      57     123 ..       4      72 ..       2      75 .. 0.87
   2 !   21.4   0.0   4.7e-08   3.2e-05      41      99 ..      58     116 ..      53     119 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.5 bits;  conditional E-value: 2.6e-09
    TIGR02521  57 Aleldpkda..danlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfe 123
                  Al+ dp d   d++ al+++y   ++ e A ++frkAl+  p+++++ N  G+ L +  + +eA  +++
  MMETSP1061-20121228|39570_1   4 ALAFDPTDDagDVYEALGVIYSVNRDYESATDAFRKALESRPDDYALWNKLGATLANGNRSDEALPMYS 72 
                  7788876643389****************************************9999999999987765 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 4.7e-08
    TIGR02521  41 YleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnng 99 
                    + +  ++A       l+l+p +a+a+l +A+   +lg++++A++ + + l+l+p+ +
  MMETSP1061-20121228|39570_1  58 LANGNRSDEALPMYSRCLQLKPRYARAWLNMAISHSNLGDHDEAARCYLQTLSLNPAAT 116
                  55566678888889999**************************************9865 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.0   3.6e-12   2.5e-09     462     568 ..      11     117 ..       4     133 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 3.6e-12
    TIGR02917 462 pdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkele 568
                  +d   +y  lg iy+ ++d++ A  af+kAL++ pd+++   +L    ++ ++ d+A   +++ l+ +p   +a l++a      g+++ea++ + +   ++p++  
  MMETSP1061-20121228|39570_1  11 DDAGDVYEALGVIYSVNRDYESATDAFRKALESRPDDYALWNKLGATLANGNRSDEALPMYSRCLQLKPRYARAWLNMAISHSNLGDHDEAARCYLQTLSLNPAATH 117
                  67778899999999999999999999999999999999888888777788889999999999999999999999999997777779999999999999999998865 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.1   6.3e-10   4.3e-07      32     113 ..      28     109 ..      15     124 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.6 bits;  conditional E-value: 6.3e-10
    TIGR02552  32 gkyeeAeklFqlLaaldpteakywlgLaaclqalkeyeeAiaaYalaaaldlddprpvyhaaecllalgekeeAlkaLklai 113
                   +ye A  +F+      p ++  w  L+a+l   ++ +eA+ +Y+++++l++  +r+ +  a+++ +lg+  eA ++   ++
  MMETSP1061-20121228|39570_1  28 RDYESATDAFRKALESRPDDYALWNKLGATLANGNRSDEALPMYSRCLQLKPRYARAWLNMAISHSNLGDHDEAARCYLQTL 109
                  589********99999**********************************************************99865555 PP

>> TIGR03939  PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   4.8e-08   3.3e-05      88     198 ..      16     126 ..       5     136 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 4.8e-08
    TIGR03939  88 elealAkAaRnekqwdkAlelyrkllqrdPknpdlllGlaltladagkdeeAlkalkelkerfpsdaerlealaYvlraaedsldalaaiqqalrlePdnkellkelveil 198
                  ++eal+  +  ++++++A+  +rk+l+  P +  l+  l  tla+ ++++eAl   ++  + +p+ a    + a   + ++d+ +a +++ q l+l+P  +  ++ l   l
  MMETSP1061-20121228|39570_1  16 VYEALGVIYSVNRDYESATDAFRKALESRPDDYALWNKLGATLANGNRSDEALPMYSRCLQLKPRYARAWLNMAISHSNLGDHDEAARCYLQTLSLNPAATHCWTYLRMSL 126
                  566666666678899999999999999999999999999999999999999999999999999988888888999999999999999999999999999888877666555 PP

>> TIGR02795  tol_pal_ybgF: tol-pal system protein YbgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   5.1e-07   0.00035      15     107 ..      27     113 ..      15     118 .. 0.89

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 5.1e-07
    TIGR02795  15 egdYakAeqaFkaFlkkYPkstlapnAqYwlGealyakkkykdAakaflevvkkypksekapdallklgeslqelgqkekAkktlqevikrYP 107
                  ++dY++A +aF++ l++ P++    n    lG +l + +  ++A   ++  ++    +++ + a+l+++ s ++lg++++A + + +  +  P
  MMETSP1061-20121228|39570_1  27 NRDYESATDAFRKALESRPDDYALWN---KLGATLANGNRSDEALPMYSRCLQ---LKPRYARAWLNMAISHSNLGDHDEAARCYLQTLSLNP 113
                  79*******************99998...7**********************9...66778899****************9999877666555 PP

>> TIGR00990  3a0801s09: mitochondrial precursor proteins import receptor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   2.5e-06    0.0017     307     397 ..      27     114 ..      12     127 .. 0.65

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 2.5e-06
    TIGR00990 307 desyeeaarafekaldlgelkekealalelrGifkflkgkheealadlsksieldPrltqsyikrasinlelgdsdkaeedfdkalkkdse 397
                  +  ye a++af+kal+     +     +++ G      +  +eal   s++++l Pr +++++++a    +lgd d+a   + ++l +++ 
  MMETSP1061-20121228|39570_1  27 NRDYESATDAFRKALESR---PDDYALWNKLGATLANGNRSDEALPMYSRCLQLKPRYARAWLNMAISHSNLGDHDEAARCYLQTLSLNPA 114
                  455777777777777543...2333334555555556666777777777777777777777777777777777777777766666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 993.06
//
Query:       MMETSP1061-20121228|39577_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 490.25
//
Query:       MMETSP1061-20121228|39593_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 758.94
//
Query:       MMETSP1061-20121228|39599_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.7    7.0   6.6       0.74    8.2   3.0    1.5  2  TIGR01601 PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1


Domain annotation for each model (and alignments):
>> TIGR01601  PYST-C1: Plasmodium yoelii subtelomeric domain PYST-C1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.1      0.14   5.6e+02      51      51 ..      51      51 ..      22      73 .. 0.46
   2 ?    8.2   3.0   0.00018      0.74      25      69 ..      68     112 .]      62     112 .] 0.87

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.14
    TIGR01601 51 i 51
                 +
  MMETSP1061-20121228|39599_1 51 T 51
                 2 PP

  == domain 2    score: 8.2 bits;  conditional E-value: 0.00018
    TIGR01601  25 eqkvsdvgnksicgskeinrsnekndieskseiqLnnnnpkdded 69 
                  e++  ++++k++   k+i+ + e+     k+  +  n+n++d++d
  MMETSP1061-20121228|39599_1  68 EEDEKVLKDKIVAQLKQIRDEREERRKRRKQAWRGSNDNDNDNDD 112
                  788899*************99999999999999989999887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 671.94
//
Query:       MMETSP1061-20121228|39618_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0028   15.6   0.1       0.33    9.1   0.0    2.2  2  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0     8e-05      0.33       6      28 ..      18      40 ..      15      41 .. 0.88
   2 !    4.5   0.0    0.0023       9.5       1      15 [.      70      84 ..      70      86 .] 0.85

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 8e-05
    TIGR00756  6 lisglckagrveeAlelfdeMke 28
                  + +++  g++  Al+l+ +M++
  MMETSP1061-20121228|39618_1 18 ALAAFGDGGDLLRALRLYFKMRK 40
                 67899****************97 PP

  == domain 2    score: 4.5 bits;  conditional E-value: 0.0023
    TIGR00756  1 vtyntlisglckagr 15
                 vty+tl+s  +  g+
  MMETSP1061-20121228|39618_1 70 VTYSTLMSRAVSLGK 84
                 7******99888887 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 567.55
//
Query:       MMETSP1061-20121228|39630_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 1121.91
//
Query:       MMETSP1061-20121228|39640_1  [L=514]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.3e-23   79.9  15.3    2.8e-10   37.4   0.0    3.6  3  TIGR00939 2a57: nucleoside Transporter


Domain annotation for each model (and alignments):
>> TIGR00939  2a57: nucleoside Transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.5   0.3   6.7e-11   2.7e-07       1      62 [.      23      85 ..      23      98 .. 0.81
   2 !   18.3   4.9   4.1e-08   0.00017      81     161 ..     158     239 ..     122     250 .. 0.87
   3 !   37.4   0.0   6.8e-14   2.8e-10     169     337 ..     291     505 ..     283     513 .. 0.64

  Alignments for each domain:
  == domain 1    score: 27.5 bits;  conditional E-value: 6.7e-11
    TIGR00939  1 ffllGlgvllpwNafitaaqyfkeryky...aqnkveaipesskfskavntvltlasllpslvle 62
                 f+llG+g+llpwNa i+a qyf +r+ +   + ++  +i +s +++  +  +++ as+l+++v+ 
  MMETSP1061-20121228|39640_1 23 FLLLGVGILLPWNAYISAKQYFVSRLCSlseNGGIYSNIDQSIEMW--FSIIYNGASVLSLAVVI 85
                 799********************99754111566788999999999..88888888888877654 PP

  == domain 2    score: 18.3 bits;  conditional E-value: 4.1e-08
    TIGR00939  81 slvillvvvilvlvlvkvqlselgafvvimalvvlinsgkallqgslfglagefPstY.tsavlsGqglaGvltsllkilvk 161
                    v l+v  +++l++  + +s  ++  + ++  ++ +  +a+   +++g ag fP+t  ++++  Gq++ G++++ +++++ 
  MMETSP1061-20121228|39640_1 158 LAVYLVVFAASTLMVFFTSISSEVFLLLNLCGLFICGACTAIATTGIVGTAGLFPATLgINPFFNGQAMGGLFVACANFAAS 239
                  457788888999*********************************************8689**************9999875 PP

  == domain 3    score: 37.4 bits;  conditional E-value: 6.8e-14
    TIGR00939 169 glkksaliYFilavvvilisivlylll.rklkfarkyl..............................................ekkldkeaqedetkkelrskaeendepakgdkeskteel.....saekepes.keeeeve....................lktsvftvlkkvkllllavvlvFtvTLsvFPavavavtssteslskkq...ifyliiafllFNvfdllGrlltskllwpde 337
                  +++    +YF++ ++v+  +++ y  + r ++ +r +                                               +                         p+++d+ s +  +       ++++e+                             +  + +v  +v   +l+++++++ TL +FP  +++  s  +  s+ +     +++++f++FN +dl+Gr l+  + +++ 
  MMETSP1061-20121228|39640_1 291 EVSLATAGYFFMGTFVLAACMMGYDYIdRYKRCVRRNSlaledtasssdeadtdhdsevadededeessyllevtdlesysglgN-------------------------PRRNDHSSRSTSMipitsYHHQTNENdT-----GtrqvkrqdstdteltnatesTQGVLVSVWCSVRGIALSLFVTYFCTLAIFPTWTSELISAFQCKSSSRirnDLFVPLSFVIFNGGDLVGRYLSGAIRFEKV 505
                  4677788999999999999999998772456677777789999999999999988886666555555555555554444443330.........................3333333333222111001111111111.....012222444444444444444556677777888899********************99887655444322456778899**************998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (514 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.19s 00:00:00.43 Elapsed: 00:00:00.35
# Mc/sec: 1938.35
//
Query:       MMETSP1061-20121228|39651_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 706.14
//
Query:       MMETSP1061-20121228|39644_1  [L=867]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          6    3.7  10.8         11    2.9   7.5    1.3  1  TIGR01541 tape_meas_lam_C: phage tail tape measure protein, lambda family


Domain annotation for each model (and alignments):
>> TIGR01541  tape_meas_lam_C: phage tail tape measure protein, lambda family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   7.5    0.0026        11      13     144 ..     392     533 ..     389     536 .. 0.76

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.0026
    TIGR01541  13 rklkklnaaeekvlasrkdevkaleklekl.....eeakqk.alelleklaeaekseraqykrqldalGlg.dkqrerleerlqierkfaeqqrdlkkaikak.geag..sdeykeqlaalkaalnealaelkdyyaavdal 144
                  +kl+kl + +   l++r+  +ka ++ +++        k+k ++e+ e  a  ++++   y+  l+   l    +  rl++++ i+ +f+ +  + + ++  k +e    + + +e+  +l++ + ++l el+d + a++ +
  MMETSP1061-20121228|39644_1 392 LKLNKLRGNAVTTLKNRRLFAKAKNEARVKkllekSISKKKtQAEIEEDAAILTQRVWRAYQNRLHNQMLAcFSKSKRLKAAMTIQLTFRRMSIKARISMAEKrRELNrlERLKREKSKQLNDDERRRLYELQDEFLAEAKK 533
                  56677777777777777777777766666555753334555799999999999999999999999976655157789****************999999987734443214455677899****************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (867 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.22s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 3092.83
//
Query:       MMETSP1061-20121228|39652_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.17s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1918.56
//
Query:       MMETSP1061-20121228|39667_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 1500.51
//
Query:       MMETSP1061-20121228|39698_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 546.81
//
Query:       MMETSP1061-20121228|39706_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 421.11
//
Query:       MMETSP1061-20121228|39699_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-73  244.3   2.3    5.6e-69  230.3   0.0    2.2  2  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
    3.7e-54  182.0   1.0    3.2e-52  175.6   0.3    2.7  2  TIGR00959 ffh: signal recognition particle protein
    7.2e-42  141.5   0.1    7.7e-41  138.1   0.1    1.9  1  TIGR01425 SRP54_euk: signal recognition particle protein SRP54
    3.2e-17   61.3   3.4    5.5e-17   60.5   0.9    2.3  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0023   14.9   0.2       0.01   12.8   0.0    2.0  2  TIGR00750 lao: LAO/AO transport system ATPase
  ------ inclusion threshold ------
      0.026   11.7   0.4       0.35    7.9   0.3    2.2  2  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein


Domain annotation for each model (and alignments):
>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.3   8.8e-06     0.006       3      56 ..     140     192 ..     138     221 .. 0.72
   2 !  230.3   0.0   8.2e-72   5.6e-69      72     279 .]     243     463 ..     232     463 .. 0.90

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8.8e-06
    TIGR00064   3 deevleeLeevLleaDvglevvekiieelkkelkekkvkeeeklkellkeelke 56 
                   +e+le+L++vLl+aD+g+ + e i++e+k+ l+e++ ++ ++ + l +e l +
  MMETSP1061-20121228|39699_1 140 IDELLEDLQDVLLQADLGVATSEDIVSEVKS-LSENNSESGKDPELLSREDLMS 192
                  5899************************986.4555555555554444444444 PP

  == domain 2    score: 230.3 bits;  conditional E-value: 8.2e-72
    TIGR00064  72 elkeekkpnvillvGvNGvGKTttiaKlakllkkeg.kkvllaAgDTFrAaAieQleewakrlgvkvikqkeg..adpaavifdaikkakaknidvvliDTaGRlqnkknLmdelkkikrvikkv..........kkeapdevllvldattGqnaleqakvFneaveldgiilTKlDgtakgGivlaikeelklpvkligvGekidDLaeFdaeefveall 279
                  + ke+k p+v+ ++G NG+GKTtti+Kla+ l  eg +kvllaA+DTFrA+A++Ql++wa+r++v+++  ++   + p++++  a +ka a+++d vliDTaGRl n+ +L +el ++k  i+++          +++ p+e llvlda +G+ al  a+v+n+ ++l+g+ilTKlDg+a+gG v+ai++el+lpvkligvGe+idDL+ F+ e+fv+ ll
  MMETSP1061-20121228|39699_1 243 ASKESKIPTVLFVMGANGMGKTTTIGKLANRLRIEGdQKVLLAACDTFRAGAVDQLQMWADRAEVDLLGPTSDgrSTPTTIAAAACEKALAEGYDTVLIDTAGRLSNNWELNEELVRMKGAIQETlaingndgekNPDVPHEALLVLDAAQGRMALDSARVWNKEIGLTGLILTKLDGSARGGSVVAISRELQLPVKLIGVGEGIDDLRDFEGEKFVDGLL 463
                  4578899***********************998776379*****************************887655699*****************************************999986422222222215689******************************************************************************9985 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0   0.0     0.011       7.8      22      58 ..     136     172 ..     116     208 .. 0.84
   2 !  175.6   0.3   4.7e-55   3.2e-52      94     297 ..     245     466 ..     236     472 .. 0.90

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.011
    TIGR00959  22 tekdikealkeirlaLleaDVnlkvvkefikkvkeka 58 
                  t ++i+e l++++  Ll+aD  +    +++++vk+ +
  MMETSP1061-20121228|39699_1 136 TASSIDELLEDLQDVLLQADLGVATSEDIVSEVKSLS 172
                  6689****************************99755 PP

  == domain 2    score: 175.6 bits;  conditional E-value: 4.7e-55
    TIGR00959  94 laekkpavillvGLqGsGKtttaaKlakklkkkekkkvllvalDlyRpaAveqLkvlgeqvgvpvfekeke..kspveiakealeeakeekvdvvivDtaGRlqideelmeelkeikevln................PdeillVvdaltGqdavnvakeFderlgltgvvltklDgDargGaaLsvksvtgkPikfigvgEkledleeFhperiaeRilgmG 297
                  +++k p+v++++G  G GKttt++Kla++l+ + ++kvll+a+D+ R++Av+qL++ +++ +v+++  +++  ++p+ ia++a e+a +e++d+v++DtaGRl+ + el eel ++k +++                P+e llV+da +G  a+  a+ +++++gltg++ltklDg argG +++++  ++ P+k+igvgE ++dl+ F  e+ ++ +lg+G
  MMETSP1061-20121228|39699_1 245 KESKIPTVLFVMGANGMGKTTTIGKLANRLRIEGDQKVLLAACDTFRAGAVDQLQMWADRAEVDLLGPTSDgrSTPTTIAAAACEKALAEGYDTVLIDTAGRLSNNWELNEELVRMKGAIQetlaingndgeknpdvPHEALLVLDAAQGRMALDSARVWNKEIGLTGLILTKLDGSARGGSVVAISRELQLPVKLIGVGEGIDDLRDFEGEKFVDGLLGIG 466
                  45688************************999**********************************855441155*****************************99999999998886654344444555555566699**********************************************************************************9 PP

>> TIGR01425  SRP54_euk: signal recognition particle protein SRP54
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.1   0.1   1.1e-43   7.7e-41      21     301 ..     134     470 ..     116     493 .. 0.87

  Alignments for each domain:
  == domain 1    score: 138.1 bits;  conditional E-value: 1.1e-43
    TIGR01425  21 videevlnellkeistallesdvnvklvrklrenikk..kinleelas.glnkrkliqkavfeelvnlvdpkvea.................................fkpkkgk.ssvimfvGlqGaGktttitklalyykkkG.fkvalvcadtfraGafdqlkqnatkakipfyGsyle..sdpvkiaseGvekfkkekfdiiivdtsGrhkqeeelfeemlqvaeaik................pdsiifvmdgsiGqaaesqakafkdsvevgsviitkldGhakGGGalsavaatkspiifiGtGekvddleifdaksfvskllGlGdlkG 301
                  v     ++ell++++  ll++d+ v   +++++++k+  + n+e+  +  l  r  + +++   l++ +d ++e                                  f  k  k ++v+ ++G +G Gkttti kla   +  G  kv l + dtfraGa dql++ a +a++   G   +  s p  ia+   ek   e +d +++dt+Gr  ++ el ee+++++ ai+                p + ++v+d++ G+ a + a+ + ++  ++ +i+tkldG a+GG  ++     + p+ +iG Ge +ddl  f+ + fv  llG+G   G
  MMETSP1061-20121228|39699_1 134 VSTASSIDELLEDLQDVLLQADLGVATSEDIVSEVKSlsENNSESGKDpELLSREDLMSVMRGVLIETLDFEKEGddtaasveeavnsgdddstppgpnsipgasairFASKESKiPTVLFVMGANGMGKTTTIGKLANRLRIEGdQKVLLAACDTFRAGAVDQLQMWADRAEVDLLGPTSDgrSTPTTIAAAACEKALAEGYDTVLIDTAGRLSNNWELNEELVRMKGAIQetlaingndgeknpdvPHEALLVLDAAQGRMALDSARVWNKEIGLTGLILTKLDGSARGGSVVAISRELQLPVKLIGVGEGIDDLRDFEGEKFVDGLLGIGSAGG 470
                  5567789*****************************9544444443332567899999999999********999999****************************98666666625677778*******************999346666677************************66542399****************************************9999985555555555555444567889**************************************999999999********************************8777 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.3   0.0      0.28   1.9e+02     109     170 ..     112     174 ..      54     211 .. 0.63
   2 !   60.5   0.9     8e-20   5.5e-17     199     286 .]     251     345 ..     238     345 .. 0.78

  Alignments for each domain:
  == domain 1    score: -0.3 bits;  conditional E-value: 0.28
    TIGR03499 109 aeeelrkelkalkellekqlselal.eeedperakllkklleagvseelarelleklke..keda 170
                  ++e l k  +   + l+ ++ ++++ +  d+  ++l + ll+a++   + +++++++k   +  +
  MMETSP1061-20121228|39699_1 112 FAEGLAKSRNRFLSNLDGLFGGVSTaSSIDELLEDLQDVLLQADLGVATSEDIVSEVKSlsE--N 174
                  33444444444444444444444337888888899999999999999999999999988532..2 PP

  == domain 2    score: 60.5 bits;  conditional E-value: 8e-20
    TIGR03499 199 gviaLvGptGvGKTTTlAKLAarfvlehgkkkValiTtDtyRiGAveQLktYakilgvpv.....kvvkdpkeleeal...eelkdkdliLiDTaG 286
                   v+ ++G  G+GKTTT+ KLA r+ +e g +kV l   Dt+R GAv+QL+ +a+  +v++     +  ++p+ ++ a    +  + +d +LiDTaG
  MMETSP1061-20121228|39699_1 251 TVLFVMGANGMGKTTTIGKLANRLRIE-GDQKVLLAACDTFRAGAVDQLQMWADRAEVDLlgptsDGRSTPTTIAAAAcekALAEGYDTVLIDTAG 345
                  478899*********************.999**********************98777762222244445555554431114467899******99 PP

>> TIGR00750  lao: LAO/AO transport system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   1.5e-05      0.01      36     136 ..     252     345 ..     241     360 .. 0.76
   2 ?   -1.2   0.0      0.27   1.9e+02     195     231 ..     478     514 ..     468     543 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 1.5e-05
    TIGR00750  36 vvGltGvPGaGkstlveklieelrrrGlkvaviavDPsspftGGsllGDrlrlqelatdpgvfirsvptrGslGGlskatrevvklldaaGfDvilvetvG 136
                  v+ + G  G+Gk t + kl+++lr +G +  ++a     +f  G++  D+l++    +   v +   ++ G+    + a+ +  k   a G+D +l++t G
  MMETSP1061-20121228|39699_1 252 VLFVMGANGMGKTTTIGKLANRLRIEGDQKVLLAA--CDTFRAGAV--DQLQMWADRA--EVDLLGPTSDGRSTPTTIAAAACEKA-LAEGYDTVLIDTAG 345
                  566889*********************76555553..448999998..9888865443..44445556677777666666555554.499*********98 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.27
    TIGR00750 195 lelsldleelferekgWrPkvlktsavegrGikelvd 231
                    l++ le+l++ +++  P v k  av+ +G ke++ 
  MMETSP1061-20121228|39699_1 478 AALASRLESLRKERAKRTPVVTKQQAVTVNGGKEVMA 514
                  4677788888888899999999999999999999764 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3   0.00051      0.35      20      44 ..     251     275 ..     237     292 .. 0.81
   2 ?    1.1   0.0     0.063        43       8      56 ..     294     337 ..     288     343 .. 0.76

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.00051
    TIGR01188  20 evfglLGPnGAGKtttikmLttllk 44 
                  +v+ ++G nG GKttti  L+  l+
  MMETSP1061-20121228|39699_1 251 TVLFVMGANGMGKTTTIGKLANRLR 275
                  577799***********98887665 PP

  == domain 2    score: 1.1 bits;  conditional E-value: 0.063
    TIGR01188   8 AvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyD 56 
                  Avd++++  ++ ev  lLGP   G++t      t+      +a   GyD
  MMETSP1061-20121228|39699_1 294 AVDQLQMWADRAEV-DLLGPTSDGRSTPT----TIAAAACEKALAEGYD 337
                  99********9998.7**********964....4444445566666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      153  (0.0372989); expected 82.0 (0.02)
Passed Vit filter:                        46  (0.011214); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.38
# Mc/sec: 1896.47
//
Query:       MMETSP1061-20121228|39726_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 501.56
//
Query:       MMETSP1061-20121228|39727_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 1049.91
//
Query:       MMETSP1061-20121228|39744_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        28  (0.00682594); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|39752_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 444.59
//
Query:       MMETSP1061-20121228|39784_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-10   36.4   1.5    5.1e-10   36.3   1.0    1.0  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    0.00039   18.4   1.0    0.00062   17.7   0.7    1.3  1  TIGR00880 2_A_01_02: multidrug resistance protein
     0.0018   15.1   3.0     0.0023   14.7   2.1    1.1  1  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.3   1.0   3.7e-13   5.1e-10     157     242 ..       6      97 ..       1      98 [] 0.91

  Alignments for each domain:
  == domain 1    score: 36.3 bits;  conditional E-value: 3.7e-13
    TIGR00879 157 vlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifg......sgklvanntlgwriplglqlipalllllglf 242
                  vl +gR++ G g+G a    P+Y++E  p+ +Rg +v+  ++ai++Gil ++  g      s+  + +n + w    g ++  a+ ++l+++
  MMETSP1061-20121228|39784_1   6 VLSLGRWIYGAGIGFAMHGGPTYLAETVPARIRGVVVGGKEIAIVLGILGGYAGGwawtrdSNGASDSNGDDWARVYGFAIPLAVAMILLSS 97 
                  7889************************************************9999999999999999999999999998888888887765 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.7   4.6e-07   0.00062      52     109 ..       5      61 ..       3      70 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 4.6e-07
    TIGR00880  52 tvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGav 109
                  +vl + r + G g ++a+  g +++a+ ++++ r+v++g   ++i+lg++ G  +G++
  MMETSP1061-20121228|39784_1   5 VVLSLGRWIYGAGIGFAMHGGPTYLAETVPARIRGVVVGGKEIAIVLGILGGY-AGGW 61 
                  7999********************************************87664.5655 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   2.1   1.7e-06    0.0023     108     160 ..       7      58 ..       3      67 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.7e-06
    TIGR00895 108 LlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggll 160
                  L++ R + g G+G ++    + ++E +p+r+r+ vvg   +  ++G+++ g  
  MMETSP1061-20121228|39784_1   7 LSLGRWIYGAGIGFAMHGGPTYLAETVPARIRGVVVGGKEIAIVLGILG-GYA 58 
                  6677999*******************************99999999764.444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 538.96
//
Query:       MMETSP1061-20121228|39790_1  [L=248]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (248 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1363.89
//
Query:       MMETSP1061-20121228|39794_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 464.60
//
Query:       MMETSP1061-20121228|39796_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 562.39
//
Query:       MMETSP1061-20121228|39802_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 691.37
//
Query:       MMETSP1061-20121228|39816_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 485.72
//
Query:       MMETSP1061-20121228|39831_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 464.60
//
Query:       MMETSP1061-20121228|39842_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 326.83
//
Query:       MMETSP1061-20121228|39870_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.2e-15   53.9   0.0    6.1e-15   52.9   0.0    1.4  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    1.4e-13   48.8   0.0    4.1e-13   47.2   0.0    1.7  2  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    4.9e-09   34.2   0.0    7.4e-09   33.6   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
      4e-08   30.7   0.0    6.4e-08   30.0   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
      3e-06   24.6   0.0    5.6e-06   23.8   0.0    1.5  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    7.5e-06   23.5   0.1    0.00024   18.5   0.0    2.2  1  TIGR02081 metW: methionine biosynthesis protein MetW
    5.1e-05   21.0   0.1     0.0023   15.6   0.0    2.1  2  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
    0.00063   16.2   0.0    0.00091   15.6   0.0    1.1  1  TIGR04074 bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
     0.0008   17.0   0.1     0.0013   16.3   0.1    1.2  1  TIGR00740 TIGR00740: putative methyltransferase
    0.00098   17.2   0.1     0.0026   15.9   0.1    1.7  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0011   16.3   0.0     0.0019   15.6   0.0    1.3  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
     0.0016   15.4   0.0     0.0023   14.9   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
  ------ inclusion threshold ------
      0.024   11.9   0.1      0.039   11.2   0.0    1.3  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase


Domain annotation for each model (and alignments):
>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   1.9e-17   6.1e-15      24     144 ..      76     217 ..      63     241 .. 0.85

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 1.9e-17
    TIGR01934  24 drlWkkkavkkieeekeekvlDvatGtGdlaielakkae.........akvtgvDlseemLevakkkakek.........eeanvefieadaeeLp..fednsfdavtiafGlRNvtdiekaLkelaRVlkpg.grlvilef 144
                     +k+++ +++e ++++ ++D+ +GtG  ++++++  +          kvtgvD+se+m++ a+kk++ +         e+ n+ef +++a++L   +++ns+d++ +   l  +   ++aL+e++R+ kpg gr+vi e 
  MMETSP1061-20121228|39870_1  76 AVDYKRQVYEMMEIKAGDSIIDIGCGTGADVLAISEILHtrttsddkiGKVTGVDISETMVREAQKKMSRRcretdhkifERVNIEFYAGNAQQLGdvIPSNSYDICRCDRSLQHMPSPKEALEEMVRISKPGvGRIVISEP 217
                  566899**********************988888887777788999999*****************9865432111122445689**********8889*********************************8678888764 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.0   1.3e-15   4.1e-13      32     151 ..      78     216 ..      70     225 .. 0.80
   2 ?   -2.1   0.0       1.5   4.7e+02     202     223 ..     253     274 ..     247     279 .. 0.76

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 1.3e-15
    TIGR02752  32 kwrkdtmkrmnvqkgkkaldvccgtadwaialaeav.......gkegevkgldfsenmlsvgkekvkda.........klenvelvhgnamelp..yednsfdyvtigfglrnvpdylqvlkemarvvkpg.gkvvcle 151
                  ++++++  +m++++g++++d+ cgt+   +a++e +        k g+v+g+d+se m++ +++k+  +         ++ n+e+  gna +l    + ns+d       l+ +p   + l+em+r+ kpg g++v  e
  MMETSP1061-20121228|39870_1  78 DYKRQVYEMMEIKAGDSIIDIGCGTGADVLAISEILhtrttsdDKIGKVTGVDISETMVREAQKKMSRRcretdhkifERVNIEFYAGNAQQLGdvIPSNSYDICRCDRSLQHMPSPKEALEEMVRISKPGvGRIVISE 216
                  67889999******************999999997622222223569*************99999854311111111234588999******964489********************************967777654 PP

  == domain 2    score: -2.1 bits;  conditional E-value: 1.5
    TIGR02752 202 laelfkeaglkdvkvksytggv 223
                  l    k+aglkdv v + t  +
  MMETSP1061-20121228|39870_1 253 LFRTCKNAGLKDVAVVPMTCPI 274
                  4455689*******99988766 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.6   0.0   2.3e-11   7.4e-09      36     127 ..      93     208 ..      80     245 .. 0.83

  Alignments for each domain:
  == domain 1    score: 33.6 bits;  conditional E-value: 2.3e-11
    TIGR02072  36 akvLdiGcGtGi....ltrallkrfpqae....lialDiseemleqakkkls..............nvqficgdiekl..plekksfDlivSnlalQWlddlsevlaelarvlkpg 127
                   +++diGcGtG+    +++ l  r + ++    ++ +Dise+m + a+kk s              n++f++g++++l  ++  +s+D+  +  +lQ + +++e+l+e+ r++kpg
  MMETSP1061-20121228|39870_1  93 DSIIDIGCGTGAdvlaISEILHTRTTSDDkigkVTGVDISETMVREAQKKMSrrcretdhkifervNIEFYAGNAQQLgdVIPSNSYDICRCDRSLQHMPSPKEALEEMVRISKPG 208
                  59*********633335666666555443233489******************************************965588889****************************97 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.0     2e-10   6.4e-08      49     152 ..      91     215 ..      68     221 .. 0.77

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 2e-10
    TIGR01983  49 eglkvlDvGcGgG..l..lseslarlgae......vtgiDlseelievAklhakkdplk.........kieyelksveelaeee.kesfDvvlamEvlEHvadleeilkecaellkpg.gilfls 152
                  +g +++D+GcG G  +  +se l  + ++      vtg+D+se++++ A+++ ++   +         +ie+ + ++++l +   ++s+D+  +   l H+++++e l+e++++ kpg g +++s
  MMETSP1061-20121228|39870_1  91 AGDSIIDIGCGTGadVlaISEILHTRTTSddkigkVTGVDISETMVREAQKKMSRRCREtdhkifervNIEFYAGNAQQLGDVIpSNSYDICRCDRSLQHMPSPKEALEEMVRISKPGvGRIVIS 215
                  4789*******996632356666554443456678**************987655433333456677789999888888877654689******************************9999988 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.8   0.0   1.8e-08   5.6e-06      46     111 ..      85     159 ..      74     214 .. 0.72

  Alignments for each domain:
  == domain 1    score: 23.8 bits;  conditional E-value: 1.8e-08
    TIGR02021  46 ewlpkdslkGkkvlDAGCGtG....llsielAkrGa......ivkavDiseklvelarkraekede.aenveFevnd 111
                  e+++    +G  ++D GCGtG     +s+ l  r        +v++vDise +v +a+k+++ + + +++  Fe  +
  MMETSP1061-20121228|39870_1  85 EMME--IKAGDSIIDIGCGTGadvlAISEILHTRTTsddkigKVTGVDISETMVREAQKKMSRRCReTDHKIFERVN 159
                  5555..458************5543366666555432222238****************998764313434454444 PP

>> TIGR02081  metW: methionine biosynthesis protein MetW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   7.6e-07   0.00024      10     105 ..      88     208 ..      78     222 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 7.6e-07
    TIGR02081  10 lipagsrvLDlGcGdGeLLallrdekqveg.........aGleideenvlacvar................GveviqqdldegLeafedksfDvvvlsqtlqavrnteeiLdellRvgrka 105
                   i+ag +++D+GcG G+ + ++ +  ++++         +G++i+e +v ++ ++                 +e   +++++  +  +++s+D+    ++lq +  ++e L+e++R+++  
  MMETSP1061-20121228|39870_1  88 EIKAGDSIIDIGCGTGADVLAISEILHTRTtsddkigkvTGVDISETMVREAQKKmsrrcretdhkifervNIEFYAGNAQQLGDVIPSNSYDICRCDRSLQHMPSPKEALEEMVRISKPG 208
                  48999***********987777776666656678999999999999999887554211222222222221123444555555556778999**************************9854 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   7.2e-06    0.0023      67     124 ..      81     145 ..      53     170 .. 0.75
   2 ?    3.2   0.0     0.044        14      42      80 ..     279     318 ..     272     336 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 7.2e-06
    TIGR00080  67 akmlelLelkagakvLeiGtGsGYqaavlaelvgrd.......glvvsierieeLvekaerrlkk 124
                   ++ e++e+kag+++++iG+G+G     ++e+++         g v +++  e +v +a++++ +
  MMETSP1061-20121228|39870_1  81 RQVYEMMEIKAGDSIIDIGCGTGADVLAISEILHTRttsddkiGKVTGVDISETMVREAQKKMSR 145
                  467899*************************9975312223337788888888888888887754 PP

  == domain 2    score: 3.2 bits;  conditional E-value: 0.044
    TIGR00080  42 lkeaayedaaleigygqtisaphmva.kmlelLelkagak 80 
                  + +aay d+a++i  ++ i +    a  m el++l++ ++
  MMETSP1061-20121228|39870_1 279 FIRAAYLDKAQKIAIEAFIVTHEEAAdWMAELIDLDKADQ 318
                  6789*************99877666525999999998775 PP

>> TIGR04074  bacter_Hen1: 3' terminal RNA ribose 2'-O-methyltransferase Hen1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   2.9e-06   0.00091     273     329 ..      82     146 ..      73     165 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 2.9e-06
    TIGR04074 273 avvaalresgarsvlDlGcGegk........LlkaLlaekqfekivgvdvsareLekakrrlkld 329
                  +v+++++     s++D+GcG g+        L  +  +++++ k++gvd+s + +++a+++++ +
  MMETSP1061-20121228|39870_1  82 QVYEMMEIKAGDSIIDIGCGTGAdvlaiseiLHTRTTSDDKIGKVTGVDISETMVREAQKKMSRR 146
                  677788888889*********9743322221223345688999******************9743 PP

>> TIGR00740  TIGR00740: putative methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.1     4e-06    0.0013      52     105 ..      90     149 ..      77     168 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 4e-06
    TIGR00740  52 tpkslvydlGcslGaatlsvr.....rniqqdev.kligidnsqpmlerareklkaykaa 105
                  +++  + d+Gc +Ga +l++      r   +d++ k+ g+d s++m++ a++k++    +
  MMETSP1061-20121228|39870_1  90 KAGDSIIDIGCGTGADVLAISeilhtRTTSDDKIgKVTGVDISETMVREAQKKMSRRCRE 149
                  578899***********998622222556667776899***************9865555 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.1   8.1e-06    0.0026      13      75 ..      85     156 ..      79     174 .. 0.68

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 8.1e-06
    TIGR02469  13 akLrlkkgdvllDiGaGtGsvtieaarlv.......pk.grvyaierneealelieeNlrrf.gvsnieive 75 
                  + +++k+gd ++DiG+GtG   + +++++        k g+v++++ +e  ++  ++ + r  +  + +i+e
  MMETSP1061-20121228|39870_1  85 EMMEIKAGDSIIDIGCGTGADVLAISEILhtrttsdDKiGKVTGVDISETMVREAQKKMSRRcRETDHKIFE 156
                  56899**************85554444331112222246788888888888888777665554777777776 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.9e-06    0.0019      85     136 ..      90     147 ..      81     184 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.9e-06
    TIGR03534  85 kkkeklkvlDlgtGsGaIalalakel........pdakviavDiseeAlkvarkNakrlg 136
                  k     +++D+g+G+Ga  la+ + l        +  kv++vDise+ ++ a+k ++r  
  MMETSP1061-20121228|39870_1  90 KAG--DSIIDIGCGTGADVLAISEILhtrttsddKIGKVTGVDISETMVREAQKKMSRRC 147
                  334..49**********999999988889999988889***********99999887644 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   7.2e-06    0.0023     109     164 ..      86     149 ..      77     177 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 7.2e-06
    TIGR00536 109 lisqeplkhilDlgtGsGcIalalAleip........naeviavDistdalavaeeNaeklkle 164
                  +++ +  + i+D+g+G+G+  la++  +           +v++vDis+  +  a++ +++ + e
  MMETSP1061-20121228|39870_1  86 MMEIKAGDSIIDIGCGTGADVLAISEILHtrttsddkIGKVTGVDISETMVREAQKKMSRRCRE 149
                  445555589***************9988888888876679****************99998766 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00012     0.039     152     204 ..      83     145 ..      80     174 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00012
    TIGR00406 152 llesldlkd.kkviDvGcGSG..iLsiaalkl.......gaakvvavDiDplavesarkNlel 204
                  ++e+++ k  +++iD+GcG G  +L+i+ ++         + kv++vDi    v++a+k +++
  MMETSP1061-20121228|39870_1  83 VYEMMEIKAgDSIIDIGCGTGadVLAISEILHtrttsddKIGKVTGVDISETMVREAQKKMSR 145
                  56777666559********99778999866541222222466899999999999999988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.24
# Mc/sec: 1897.34
//
Query:       MMETSP1061-20121228|39886_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 521.01
//
Query:       MMETSP1061-20121228|39893_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1431.04
//
Query:       MMETSP1061-20121228|39906_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 359.97
//
Query:       MMETSP1061-20121228|39909_1  [L=210]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00081   17.5   0.0       0.71    8.1   0.0    2.3  2  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.1   0.0   0.00017      0.71       5      24 ..      56      75 ..      53      84 .. 0.88
   2 !    7.1   0.0   0.00035       1.4       5      39 ..     169     199 ..     166     205 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00017
    TIGR01557  5 vWteelhrrFlqAvqklGge 24
                 +Wt ++h+ F  ++ ++G +
  MMETSP1061-20121228|39909_1 56 HWTGREHDQFFVGLLQYGCG 75
                 8*************999975 PP

  == domain 2    score: 7.1 bits;  conditional E-value: 0.00035
    TIGR01557   5 vWteelhrrFlqAvqklGgedkatPkkIlelmkve 39 
                  +Wtee+ ++ + A+ + Gg      k+  e++k++
  MMETSP1061-20121228|39909_1 169 PWTEEEKKMIVSALLFHGG-SY---KEMSEFIKTR 199
                  6***************999.65...6776666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (210 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 1026.58
//
Query:       MMETSP1061-20121228|39934_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       292  (0.0711848); expected 82.0 (0.02)
Passed bias filter:                      210  (0.0511945); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 377.97
//
Query:       MMETSP1061-20121228|39951_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|39961_1  [L=261]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (261 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1640.44
//
Query:       MMETSP1061-20121228|39972_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|39984_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 533.46
//
Query:       MMETSP1061-20121228|39989_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 514.06
//
Query:       MMETSP1061-20121228|39985_1  [L=706]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.8    4.9   8.9       0.33    8.7   0.0    3.6  4  TIGR02978 phageshock_pspC: phage shock protein C


Domain annotation for each model (and alignments):
>> TIGR02978  phageshock_pspC: phage shock protein C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.3      0.21   8.7e+02      78      78 ..     100     100 ..      65     129 .. 0.52
   2 ?   -1.0   0.0     0.079   3.2e+02      84     119 ..     158     193 ..     133     195 .. 0.65
   3 ?    8.7   0.0   8.1e-05      0.33      71     112 ..     322     363 ..     305     403 .. 0.88
   4 ?   -1.9   0.1      0.15   6.3e+02      86     106 ..     438     458 ..     413     469 .. 0.57

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.21
    TIGR02978  78 a 78 
                  +
  MMETSP1061-20121228|39985_1 100 R 100
                  1 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.079
    TIGR02978  84 ealrevkeelrrleerlrevEryvtssefklerefr 119
                  + +++ + ++  +e++++ +E+   s   +l++e+ 
  MMETSP1061-20121228|39985_1 158 HKIKRYEISFGVMENQMAMIETSSGSIINTLKKEIA 193
                  444555556667777777777777777777777776 PP

  == domain 3    score: 8.7 bits;  conditional E-value: 8.1e-05
    TIGR02978  71 vkkkfwqagetpkealrevkeelrrleerlrevEryvtssef 112
                  +  ++w++ ++ ++ + +vk+ l++ ++ + ++E++vts + 
  MMETSP1061-20121228|39985_1 322 TRGRIWEERHRIESSICRVKTILESTNTAISNLEDIVTSFNP 363
                  47899***999****************************765 PP

  == domain 4    score: -1.9 bits;  conditional E-value: 0.15
    TIGR02978  86 lrevkeelrrleerlrevEry 106
                  l e+++  +++ ++l+e+E+ 
  MMETSP1061-20121228|39985_1 438 LLELEKVEAECSRQLKELEER 458
                  444444444444444444432 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (706 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       229  (0.0558264); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.32u 0.12s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 2823.77
//
Query:       MMETSP1061-20121228|40010_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 533.03
//
Query:       MMETSP1061-20121228|40018_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 378.75
//
Query:       MMETSP1061-20121228|40016_1  [L=719]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (719 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 2791.18
//
Query:       MMETSP1061-20121228|40046_1  [L=512]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00073   16.7   0.0     0.0013   16.0   0.0    1.3  1  TIGR00755 ksgA: dimethyladenosine transferase
     0.0025   15.9   0.0     0.0092   14.1   0.0    1.9  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
     0.0048   14.6   0.0      0.008   13.8   0.0    1.3  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
  ------ inclusion threshold ------
      0.016   12.5   0.0      0.033   11.5   0.0    1.5  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific


Domain annotation for each model (and alignments):
>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.0   1.2e-06    0.0013      20      90 ..     186     262 ..     178     281 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.2e-06
    TIGR00755  20 kiveaaeveesdvvlEiGpGlGaLTeellekakk...vvaiEiDkrlaekLrkkle...leekleviegDalkldle 90 
                   iv +++++++ vv E G G GaL++ +l+  ++   ++++E  ++ ae+ r+++    +++  +v+++D++ ++ +
  MMETSP1061-20121228|40046_1 186 MIVFYLNIRPNMVVCESGTGSGALSHCILRSIAPrgmLHTFEFNQQRAEEARREFAsngVSHISNVYHKDVCGKNKH 262
                  69999************************99876677*****************99787788889999999987766 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     9e-06    0.0092      12      77 ..     188     255 ..     185     281 .. 0.82
   2 ?   -2.0   0.0      0.89   9.1e+02      48      63 ..     309     324 ..     299     350 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 9e-06
    TIGR02469  12 LakLrlkkgdvllDiGaGtGsvtieaarlvpk.grvyaierneealelieeNlrrfgvsnie.ivegd 77 
                  + +L++++++v+ + G G+G ++  + r +   g + ++e n++++e  ++  + +gvs+i  + ++d
  MMETSP1061-20121228|40046_1 188 VFYLNIRPNMVVCESGTGSGALSHCILRSIAPrGMLHTFEFNQQRAEEARREFASNGVSHISnVYHKD 255
                  5689*******************9999877655*********************99998875144444 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.89
    TIGR02469  48 aierneealelieeNl 63 
                  +ie++++ +e +e+N 
  MMETSP1061-20121228|40046_1 309 CIEQSQKTIEALEQNG 324
                  8999999999999994 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   7.8e-06     0.008      59     125 ..     177     243 ..     166     282 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 7.8e-06
    TIGR00080  59 tisaphmvakmlelLelkagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrlkkL 125
                   i   +  ++++ +L++ +++ v e GtGsG ++ ++ + +   g+  + e  ++ +e+a+r++   
  MMETSP1061-20121228|40046_1 177 QIVHFLDASMIVFYLNIRPNMVVCESGTGSGALSHCILRSIAPRGMLHTFEFNQQRAEEARREFASN 243
                  5555566678889*******************998877777767*****************998773 PP

>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.5   0.0   3.2e-05     0.033      87     151 ..     194     260 ..     182     284 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.5 bits;  conditional E-value: 3.2e-05
    TIGR03534  87 keklkvlDlgtGsGaIalalakel.pdakviavDiseeAlkvarkNakrlglke.veflksdlleal 151
                  ++++ v++ gtGsGa+  +++  + p+  ++  +++++ ++ ar+ ++++g+++  ++++ d++ + 
  MMETSP1061-20121228|40046_1 194 RPNMVVCESGTGSGALSHCILRSIaPRGMLHTFEFNQQRAEEARREFASNGVSHiSNVYHKDVCGKN 260
                  4567899**********99887754899999***********************8899999996544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (512 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2330.29
//
Query:       MMETSP1061-20121228|40055_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1061-20121228|40049_1  [L=615]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.6    2.5  16.1      0.071    8.5   6.4    1.4  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        5.4    2.4  16.9      0.052    9.0   6.5    1.3  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.5   6.4   3.5e-05     0.071     803     932 ..       6     135 ..       1     161 [. 0.80
   2 ?   -3.8   0.4      0.19   3.9e+02     384     411 ..     495     522 ..     452     563 .. 0.43

  Alignments for each domain:
  == domain 1    score: 8.5 bits;  conditional E-value: 3.5e-05
    TIGR02169 803 kleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelkaklealee 932
                  k ++  +r e+r   +ea +++++   e+l++++++ ++e+  l+ ++  ++ke++el+ k ++  +++ +l ++  +L ++  +  + +  l++el  ++k+  ++ a+  ++ kr+++  ++  +  +
  MMETSP1061-20121228|40049_1   6 KKQNAAAREEQRPPTVEAPVKRQQPPAEVLQQQRKKHHDEVTSLTTKNYRLAKELAELRLKHRDECKNVTRLTMENMNLASRCREAISHVAMLKKELAMQQKRTSQALASQREQTKRMADSLTNSFISFS 135
                  5556667778888899999999999999999999999999999999999999999999999999999999999999999999999999999999999988888877766666666776666555555555 PP

  == domain 2    score: -3.8 bits;  conditional E-value: 0.19
    TIGR02169 384 lreelkelkekleklkeelnelkreldr 411
                  +  +  ++k++l++  +e  +  +e ++
  MMETSP1061-20121228|40049_1 495 ALFRRIQQKKRLDMNADESSSPTQEPRK 522
                  2222222222333222222222222111 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.0   6.5   2.5e-05     0.052     236     833 ..      27     122 ..       1     166 [. 0.40
   2 ?   -4.4   0.5       0.3   6.1e+02     445     464 ..     501     520 ..     452     552 .. 0.39

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 2.5e-05
    TIGR02168 236 elkeeleeleeelkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglsegvkallknksklagilgvlselieveekyeaAieaalgerlqavvveneeaakkaiealkknelGrvtflpldvikgaeieaseaevlkseegvlgvakdlvkvdeklekalealLggvlvvddldsAlelakklraeerivtldGelvrrggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslek 833
                  +++   e l+++ k+  +e+++l+++  +l +el+elrl+++   +++++l+ e  +l+++ ++  +++++lk++l                                                                                                                                                                                                                                                                                                                                                                                                                                                                      + ++++ ++a                                                +++++e+ ++
  MMETSP1061-20121228|40049_1  27 RQQPPAEVLQQQRKKHHDEVTSLTTKNYRLAKELAELRLKHRDECKNVTRLTMENMNLASRCREAISHVAMLKKEL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMQQKRTSQA------------------------------------------------LASQREQTKR 122
                  1222222223333333333333333333333333333333333333333333333333333333333333333222......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2222222222................................................1111111111 PP

  == domain 2    score: -4.4 bits;  conditional E-value: 0.3
    TIGR02168 445 eeleeeleeleeelerleea 464
                  +++++   +++e+ + ++e 
  MMETSP1061-20121228|40049_1 501 QQKKRLDMNADESSSPTQEP 520
                  11111111111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (615 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.36u 0.14s 00:00:00.50 Elapsed: 00:00:00.31
# Mc/sec: 2618.49
//
Query:       MMETSP1061-20121228|40078_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 640.15
//
Query:       MMETSP1061-20121228|40071_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 1154.90
//
Query:       MMETSP1061-20121228|40079_1  [L=367]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (367 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       218  (0.0531448); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.32
# Mc/sec: 1513.75
//
Query:       MMETSP1061-20121228|40100_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0052   13.1   2.8     0.0059   12.9   2.0    1.0  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
  ------ inclusion threshold ------
      0.041    9.4   5.2      0.047    9.2   3.6    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.13    9.8   3.8       0.13    9.7   2.7    1.0  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
       0.15    7.5   5.7       0.17    7.3   4.0    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        1.6    6.8   7.9        1.9    6.6   5.5    1.1  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   2.0   7.1e-06    0.0059     200     259 ..       4      62 ..       2      66 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 7.1e-06
    TIGR03185 200 keeleseieseiealeaelkeqeekievlaqeiaalrkeleeaerkleslekkfeseGge 259
                  +e l++e+  +++++++el e++++i++l+++i+  ++e ee + k++  +++ +++Gg+
  MMETSP1061-20121228|40100_1   4 DERLQDEQRLQLRQQQRELSELQSRIQMLKDQIDCQQTEQEEHDSKVN-CNETQRDAGGK 62 
                  56677888899************************9999999888775.56677788875 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   3.6   5.7e-05     0.047     389     436 ..       9      56 ..       2      63 .. 0.58

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 5.7e-05
    TIGR02168 389 aeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeae 436
                  +e + ql++++ el++l++++++l+++ + +++e+ee+++k++ +e++
  MMETSP1061-20121228|40100_1   9 DEQRLQLRQQQRELSELQSRIQMLKDQIDCQQTEQEEHDSKVNCNETQ 56 
                  455556666666666666666666666666666666665555544443 PP

>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.7   2.7   0.00016      0.13      92     134 ..       7      49 ..       2      68 .. 0.64

  Alignments for each domain:
  == domain 1    score: 9.7 bits;  conditional E-value: 0.00016
    TIGR03789  92 kqeqqlvaltekqqaleqleaeyqqaqkeletlqqeqeqllee 134
                   q++q  +l+++q++l +l++  q ++ +++ +q eqe+  ++
  MMETSP1061-20121228|40100_1   7 LQDEQRLQLRQQQRELSELQSRIQMLKDQIDCQQTEQEEHDSK 49 
                  5666666667777777777777777777776666666655544 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.3   4.0   0.00021      0.17     704     752 ..       7      55 ..       2      62 .. 0.51

  Alignments for each domain:
  == domain 1    score: 7.3 bits;  conditional E-value: 0.00021
    TIGR02169 704 rldelssklsdaekkieeiekeleqleeeeeklkerleeleeklselee 752
                    de + +l++++++++e+++++++l+++ + ++ ++ee  +k++  e 
  MMETSP1061-20121228|40100_1   7 LQDEQRLQLRQQQRELSELQSRIQMLKDQIDCQQTEQEEHDSKVNCNET 55 
                  4455555555555555555555555555555555555555554443333 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.6   5.5    0.0023       1.9      29      71 ..       9      51 ..       3      59 .. 0.82

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0023
    TIGR03495 29 ekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqla 71
                 ++++ +l++qq+el++ ++ ++ l+ +++ ++ +q++ + +++
  MMETSP1061-20121228|40100_1  9 DEQRLQLRQQQRELSELQSRIQMLKDQIDCQQTEQEEHDSKVN 51
                 6788899999999999999999999999999999988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       284  (0.0692345); expected 82.0 (0.02)
Passed bias filter:                      229  (0.0558264); expected 82.0 (0.02)
Passed Vit filter:                        31  (0.00755729); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 436.14
//
Query:       MMETSP1061-20121228|40107_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 597.42
//
Query:       MMETSP1061-20121228|40122_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 188.56
//
Query:       MMETSP1061-20121228|40131_1  [L=213]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (213 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 1222.33
//
Query:       MMETSP1061-20121228|40153_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 443.96
//
Query:       MMETSP1061-20121228|40155_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.32
# Mc/sec: 684.69
//
Query:       MMETSP1061-20121228|40162_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 390.23
//
Query:       MMETSP1061-20121228|40196_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.9e-08   29.5   0.0    1.1e-07   28.9   0.0    1.2  1  TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
    8.9e-07   25.9   0.0    1.3e-06   25.3   0.0    1.2  1  TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
    3.9e-06   23.6   0.0    5.7e-06   23.0   0.0    1.2  1  TIGR03219 salicylate_mono: salicylate 1-monooxygenase
    1.3e-05   22.1   0.1    1.9e-05   21.6   0.0    1.2  1  TIGR01989 COQ6: ubiquinone biosynthesis monooxygenase COQ6
    0.00067   16.4   0.0      0.001   15.8   0.0    1.3  1  TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
     0.0034   14.9   0.0     0.0053   14.3   0.0    1.3  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
  ------ inclusion threshold ------
      0.033   11.0   0.0      0.057   10.2   0.0    1.3  1  TIGR02023 BchP-ChlP: geranylgeranyl reductase


Domain annotation for each model (and alignments):
>> TIGR01988  Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   1.8e-10   1.1e-07     276     352 ..     122     193 ..     114     204 .. 0.85

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 1.8e-10
    TIGR01988 276 vaervaliGdAAhtvhPlAGQGlNlGlrDvaaLaevlaeavergedigslavLkrYererradnaallaatdllnrl 352
                   + +v+l GdAAh + P  G G+N  lrD++  +e+l+e++ +   +   ++L +++++r ++ +al+++   l ++
  MMETSP1061-20121228|40196_1 122 LKAGVVLMGDAAHATSPSIGMGMNTALRDAQVFSEILEETKDD---L--ESALPAFSEARVKEGNALTHLAMHLYSM 193
                  5789**********************************97555...4..4789999999999999888887776655 PP

>> TIGR01984  UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   2.2e-09   1.3e-06     274     346 ..     122     192 ..     113     206 .. 0.86

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 2.2e-09
    TIGR01984 274 vkervvlignaAqtlhPiAgQGfNlGlrDvltLaevledarkdlGeaallqeylkerkeDraatigltdeLvr 346
                  +k  vvl+g+aA+   P  g G+N  lrD+   +e+le+ ++dl    +l ++++ r +  +a+++l  +L +
  MMETSP1061-20121228|40196_1 122 LKAGVVLMGDAAHATSPSIGMGMNTALRDAQVFSEILEETKDDLE--SALPAFSEARVKEGNALTHLAMHLYS 192
                  56779***********************************99985..46888999998888888887777765 PP

>> TIGR03219  salicylate_mono: salicylate 1-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   9.8e-09   5.7e-06     300     348 ..     124     173 ..     108     183 .. 0.84

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 9.8e-09
    TIGR03219 300 GrvaliGdaahamlphqGaGaGqGledayllarlledtkleae.dlpell 348
                    v+l+Gdaaha  p  G G    l da +++++le+tk + e  lp+ +
  MMETSP1061-20121228|40196_1 124 AGVVLMGDAAHATSPSIGMGMNTALRDAQVFSEILEETKDDLEsALPAFS 173
                  5699*********************************9987541455554 PP

>> TIGR01989  COQ6: ubiquinone biosynthesis monooxygenase COQ6
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   3.3e-08   1.9e-05     331     371 ..     122     162 ..     111     201 .. 0.74

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 3.3e-08
    TIGR01989 331 vtervALvGDAAHrvHPLAGqGvNlGfsDvesLvkalaeav 371
                  ++ +v L+GDAAH + P  G G+N+ + D+++  + l+e+ 
  MMETSP1061-20121228|40196_1 122 LKAGVVLMGDAAHATSPSIGMGMNTALRDAQVFSEILEETK 162
                  57899****************************99999864 PP

>> TIGR02360  pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   1.8e-06     0.001     281     330 ..     126     174 ..     119     204 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 1.8e-06
    TIGR02360 281 lflaGdaahivpptGakGlnlaasdvaylyealleaykekdsaglerysa 330
                  + l Gdaah   p+   G+n+a  d ++++e l e+ ++  +++l ++s+
  MMETSP1061-20121228|40196_1 126 VVLMGDAAHATSPSIGMGMNTALRDAQVFSEILEETKDD-LESALPAFSE 174
                  5799***********************999988776554.5566777776 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0   9.1e-06    0.0053     261     292 ..     122     153 ..     102     158 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 9.1e-06
    TIGR02032 261 vtgnvllvGDAAglVkPltGeGIayamvagkl 292
                   +++v+l+GDAA    P  G G+++a++ +++
  MMETSP1061-20121228|40196_1 122 LKAGVVLMGDAAHATSPSIGMGMNTALRDAQV 153
                  5789***********************98887 PP

>> TIGR02023  BchP-ChlP: geranylgeranyl reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   9.7e-05     0.057     264     342 ..     124     197 ..     117     205 .. 0.85

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 9.7e-05
    TIGR02023 264 ervvLvGDaaGlvakasGeGiyyamksGklaaeaivealksgdatdLrkyekkfmklyktvfrvLrvlqkvyYrsdkrr 342
                    vvL+GDaa   +++ G G+  a++  ++ +e + e+ +     dL+++   f +   +   +L  l +  Y  dk +
  MMETSP1061-20121228|40196_1 124 AGVVLMGDAAHATSPSIGMGMNTALRDAQVFSEILEETKD-----DLESALPAFSEARVKEGNALTHLAMHLYSMDKTQ 197
                  459************************9999988877766.....8999999999999999999999999999888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1548.33
//
Query:       MMETSP1061-20121228|40201_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.55
# Mc/sec: 967.12
//
Query:       MMETSP1061-20121228|40222_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   14.8   0.1     0.0017   14.7   0.0    1.0  1  TIGR03788 marine_srt_targ: marine proteobacterial sortase target protein
      0.002   15.5   0.0     0.0021   15.4   0.0    1.0  1  TIGR03436 acidobact_VWFA: VWFA-related Acidobacterial domain


Domain annotation for each model (and alignments):
>> TIGR03788  marine_srt_targ: marine proteobacterial sortase target protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   8.3e-07    0.0017     265     320 ..       5      63 ..       2      78 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 8.3e-07
    TIGR03788 265 aaaqslkRevvfviDtsGsmage...sieqAksalllalsqLkpkDrfnvieFdsdvel 320
                  ++  ++++  +fv+D sGsm+++    ++   + l+   ++ + +D + v++F+++++ 
  MMETSP1061-20121228|40222_1   5 TTRDNMRKHNIFVLDESGSMESDwsgVVSVYNKFLQNRRQRQHESDLISVVQFNNTARV 63 
                  567789999***********9864323555566777778888899*********99865 PP

>> TIGR03436  acidobact_VWFA: VWFA-related Acidobacterial domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.0     1e-06    0.0021      63     116 ..       8      64 ..       2      92 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 1e-06
    TIGR03436  63 pllPlslvlviDalnsqredlararaaaikflktvlrp...edevavvtfneqlrll 116
                  ++++ + ++v+D ++s++ d++ + +   kfl++  +    +d + vv+fn+++r++
  MMETSP1061-20121228|40222_1   8 DNMRKHNIFVLDESGSMESDWSGVVSVYNKFLQNRRQRqheSDLISVVQFNNTARVT 64 
                  4578899******************9999999876543234899**********993 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 556.65
//
Query:       MMETSP1061-20121228|40223_1  [L=369]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (369 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.12s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1873.23
//
Query:       MMETSP1061-20121228|40246_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 548.80
//
Query:       MMETSP1061-20121228|40254_1  [L=415]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (415 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2106.75
//
Query:       MMETSP1061-20121228|40276_1  [L=432]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00065   15.8   0.0     0.0021   14.1   0.0    1.6  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase
    0.00073   16.9   0.0     0.0014   15.9   0.0    1.5  1  TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0     1e-06    0.0021     177     263 ..     159     232 ..     135     241 .. 0.78

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1e-06
    TIGR04075 177 dekGPfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvm..smvkagaalcvpGnhee 263
                  + + P  i GdvhG +++l +l+e  G+               p   + +f Gd+vdrG++s +++ l+   ++    + + ++Gnhe+
  MMETSP1061-20121228|40276_1 159 ELEAPIKICGDVHGQYSDLLRLFEYGGF---------------PPVSNYLFCGDYVDRGKQSIETISLMLayKIQYPENFFLLRGNHES 232
                  5678999999999999999999998888...............3334679**************98776511556678889999***97 PP

>> TIGR00668  apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0     7e-07    0.0014       5      52 ..     166     212 ..     163     293 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 7e-07
    TIGR00668   5 ligdlhgcydelqlllervefdpakdtlyltgdlvargdkslevlryv 52 
                  + gd+hg y +l  l+e   f p  + l+  gd v rg++s+e++ ++
  MMETSP1061-20121228|40276_1 166 ICGDVHGQYSDLLRLFEYGGFPPVSNYLF-CGDYVDRGKQSIETISLM 212
                  68**********************99987.7***********987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (432 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.12s 00:00:00.37 Elapsed: 00:00:00.22
# Mc/sec: 2591.79
//
Query:       MMETSP1061-20121228|40288_1  [L=202]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-52  176.1   0.0    2.2e-52  175.9   0.0    1.0  1  TIGR02729 Obg_CgtA: Obg family GTPase CgtA
    6.9e-15   52.8   0.2    1.1e-06   25.8   0.1    2.2  2  TIGR00092 TIGR00092: GTP-binding protein YchF
    5.1e-11   39.9   0.0    6.6e-11   39.5   0.0    1.2  1  TIGR03156 GTP_HflX: GTP-binding protein HflX
      8e-08   30.1   0.0    6.1e-07   27.2   0.0    2.2  1  TIGR00231 small_GTP: small GTP-binding protein domain
    1.2e-05   22.3   0.0    0.00016   18.6   0.0    2.3  1  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA
    2.5e-05   21.5   0.0     0.0047   13.9   0.0    2.1  2  TIGR03597 GTPase_YqeH: ribosome biogenesis GTPase YqeH
    2.5e-05   21.6   0.0    3.9e-05   21.0   0.0    1.3  1  TIGR00436 era: GTP-binding protein Era
      6e-05   20.1   0.0    0.00017   18.7   0.0    1.7  1  TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE
      8e-05   19.4   0.0    9.9e-05   19.2   0.0    1.1  1  TIGR03918 GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
    0.00042   17.0   0.0    0.00056   16.5   0.0    1.1  1  TIGR00437 feoB: ferrous iron transport protein B
     0.0015   16.1   0.0     0.0093   13.5   0.0    2.1  1  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0035   14.6   0.0       0.17    9.0   0.0    2.2  2  TIGR03596 GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF


Domain annotation for each model (and alignments):
>> TIGR02729  Obg_CgtA: Obg family GTPase CgtA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.9   0.0   6.4e-55   2.2e-52     157     311 ..       2     164 ..       1     182 [. 0.89

  Alignments for each domain:
  == domain 1    score: 175.9 bits;  conditional E-value: 6.4e-55
    TIGR02729 157 ladvglvGlpnaGkStllsavsaakpkiadYpFtTlvPnLGvveveeeksfvlaDiPgliegasegagLGleFLkHiertrvllhlidlseedekdpvedleviekeLkkyse.eLaekpelvvlnkidlleeeeleellkelkeel.......ekkvlaisa 311
                  +ad+glvG+pnaGkS+llsa s+a+p+ia YpFtTl+P +G +e+++  ++  aD+Pgli gaseg+g G++FL+H+ert+ ll+++d++ +d +dp+ed+ev+ +eL++y + ++++++ lvv+nkidll e+e +e+  +l+++        e++v+ isa
  MMETSP1061-20121228|40288_1   2 IADIGLVGFPNAGKSSLLSATSRATPHIAPYPFTTLHPLVGYIEYKDGFRVCAADVPGLIAGASEGRGQGHDFLRHLERTKALLYIVDAAGIDGRDPIEDFEVLVQELSAYGDgDMLNRRCLVVANKIDLLLEDERNEIFGKLQTRAeevgirmETDVIGISA 164
                  8**************************************************************************************************************7637******************999999998887764445544556666665 PP

>> TIGR00092  TIGR00092: GTP-binding protein YchF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0     5e-09   1.7e-06       5      47 ..       5      46 ..       2      51 .. 0.90
   2 !   25.8   0.1   3.3e-09   1.1e-06      72     145 ..      55     122 ..      50     160 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 5e-09
    TIGR00092  5 aGivGLpnvGkstlfqaitkaklgeaanyPfatiepntgvvnv 47
                  G+vG pn Gks l +a  +a+   +a yPf+t+ p +g ++ 
  MMETSP1061-20121228|40288_1  5 IGLVGFPNAGKSSLLSATSRATP-HIAPYPFTTLHPLVGYIEY 46
                 69***************999988.************9998875 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 3.3e-09
    TIGR00092  72 vDiaGLvkGaskGeGLGnkfLaniRevdaivhvvRcfedddivhvegkvdPvrDlevineeLi.laDlelvekki 145
                   D+ GL++Gas+G+G G  fL ++  + a++ +v          ++g+ dP++D+ev+++eL    D ++++++ 
  MMETSP1061-20121228|40288_1  55 ADVPGLIAGASEGRGQGHDFLRHLERTKALLYIVD------AAGIDGR-DPIEDFEVLVQELSaYGDGDMLNRRC 122
                  699******************************94......4567776.*************6246777777665 PP

>> TIGR03156  GTP_HflX: GTP-binding protein HflX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.5   0.0   1.9e-13   6.6e-11     190     324 ..       3     142 ..       1     182 [. 0.82

  Alignments for each domain:
  == domain 1    score: 39.5 bits;  conditional E-value: 1.9e-13
    TIGR03156 190 ptvalvGYTNaGKstllnaltkaevlaedklFATLdpttrrlklpeeeevlltDTVGFirkLPheLveaFkaTLeevaeadlllhvvDasdeeaeeqieaveevLeelgaeei......pvllvlNkidkleeeeleelee 324
                    ++lvG+ NaGKs+ll a  +a+   +   F+TL p +  ++++++ +v  +D  G i    +   +  +  L   +++  ll +vDa+  + ++ ie+ e +++el a         ++l+v Nkid+l e+e +e   
  MMETSP1061-20121228|40288_1   3 ADIGLVGFPNAGKSSLLSATSRATPHIAPYPFTTLHPLVGYIEYKDGFRVCAADVPGLIAGASEGRGQG-HDFLRHLERTKALLYIVDAAGIDGRDPIEDFEVLVQELSAYGDgdmlnrRCLVVANKIDLLLEDERNEIFG 142
                  6799********************************************************998877665.567899999999**************************9876556666699*********98666655433 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.8e-09   6.1e-07       4      95 ..       3      92 ..       1     158 [. 0.68

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.8e-09
    TIGR00231  4 ikivivGhvdvGKstLlnsllknkisiteskpgvtrdyvteqiee.dGktykvnllDTaGqedfdairrlyvreverslevvdivilvldvee 95
                 + i++vG++++GKs+Ll+  ++ +  i  + p++t +     ie+ dG  ++v   D++G ++ +   r    +  r le +   ++++d+  
  MMETSP1061-20121228|40288_1  3 ADIGLVGFPNAGKSSLLSATSRATPHIAPY-PFTTLHPLVGYIEYkDG--FRVCAADVPGLIAGASEGRGQGHDFLRHLERTKALLYIVDAAG 92
                 579*********************777766.99999988888887357..99********777766666666666666666666665555543 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   4.7e-07   0.00016     177     348 ..       4     184 ..       2     194 .. 0.72

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 4.7e-07
    TIGR03594 177 kiaiiGrpNvGKStLvNallgeervivsdiaGtTrDsidievevk.gkkylliDTAGirrkkkveekveklsvlrtlkaieradvvllvlDat.....egiseqDlkiaglil.....eegkalvivvNKwDlvkdekeleelkkeleeklkfl...kfapivfiSA.ltgkgveklleaikevyes 348
                   i+++G pN+GKS+L+ a  + +  i  + + tT  +    +e+k g ++   D  G+   ++      +   ++ l+ +er +  l+++Da      ++i++ +  + +l +       ++ +++v NK+Dl+  e+e++e+  +l+++ + +     ++++ iSA  tg+++  l+++i++++ s
  MMETSP1061-20121228|40288_1   4 DIGLVGFPNAGKSSLLSATSRATPHI-APYPFTTLHPLVGYIEYKdGFRVCAADVPGLIAGASEG----RGQGHDFLRHLERTKALLYIVDAAgidgrDPIEDFEVLVQELSAygdgdMLNRRCLVVANKIDLL-LEDERNEIFGKLQTRAEEVgirMETDVIGISAgATGENLPFLTKSIRRTVLS 184
                  5899************9999988887.599*********9999983568999*****98766654....3334556666666666676666542222278888777666654311111457999**********.7777777777777666665333678999999956899999999999876544 PP

>> TIGR03597  GTPase_YqeH: ribosome biogenesis GTPase YqeH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.8   0.0    0.0042       1.4     159     216 ..       6      61 ..       3      68 .. 0.68
   2 !   13.9   0.0   1.4e-05    0.0047      74     149 ..      99     178 ..      69     189 .. 0.70

  Alignments for each domain:
  == domain 1    score: 5.8 bits;  conditional E-value: 0.0042
    TIGR03597 159 yvvGvtNVGKSsliNkllklnkgkkkvittSkfpgTTld..lieipldke..svllDtpGii 216
                   +vG  N GKSsl+ +     + +++   + ++p TTl+  +  i+ +++   +  D pG+i
  MMETSP1061-20121228|40288_1   6 GLVGFPNAGKSSLLSATS---RATPH---IAPYPFTTLHplVGYIEYKDGfrVCAADVPGLI 61 
                  579*********987643...44455...788999999865444555444114556888877 PP

  == domain 2    score: 13.9 bits;  conditional E-value: 1.4e-05
    TIGR03597  74 ifdlegslikelkrf....vkenkvllvvNKidllpksvklekikewlkkeakeeglk.pvdillvsa.kkkkglkelleli 149
                  i d+e  l++el+ +    + + ++l+v+NKidll +  ++++i   l+++a+e g++ ++d++ +sa +++++l  l++ i
  MMETSP1061-20121228|40288_1  99 IEDFE-VLVQELSAYgdgdMLNRRCLVVANKIDLLLED-ERNEIFGKLQTRAEEVGIRmETDVIGISAgATGENLPFLTKSI 178
                  55555.55555555422224467899*********876.6789**************9788999888724456666666655 PP

>> TIGR00436  era: GTP-binding protein Era
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.0   1.2e-07   3.9e-05       3     161 ..       5     180 ..       3     196 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 1.2e-07
    TIGR00436   3 vailGrpnvGKSTLlNkllgqkisivSpkaqTTrnrisgiltegasq.iifiDtPGlhekkhklnellvkeirkalsevdlilfvvdsdeknked.....ellleklqk......lkapvvlalnkldnkekdkllelidkeasllefk......eiveisa.lkgenveelkaivea 161
                  ++++G pn+GKS Ll     +    + p + TT++ ++g +  +    +   D+PGl     + ++   ++  + l+    +l++vd+    ++d     e+l+++l        l+++ +++ nk+d   +d++ e + k++++ e        +++ isa  +gen+ +l++ +++
  MMETSP1061-20121228|40288_1   5 IGLVGFPNAGKSSLLSATSRATPH-IAPYPFTTLHPLVGYIEYKDGFrVCAADVPGLIAG-ASEGRGQGHDFLRHLERTKALLYIVDAAGIDGRDpiedfEVLVQELSAygdgdmLNRRCLVVANKIDLLLEDERNEIFGKLQTRAEEVgirmetDVIGISAgATGENLPFLTKSIRR 180
                  89*************998777665.689***********887665543999******875.455677778888889999999999998877776533233456677754222222456677888888888777777777777766665445555678888873467777777776665 PP

>> TIGR00450  mnmE_trmE_thdF: tRNA modification GTPase TrmE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   4.9e-07   0.00017     212     330 ..       5     137 ..       2     196 .. 0.71

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 4.9e-07
    TIGR00450 212 laivGktNvGKSSLlNallkkdraiVsdikGttRDvvEedlel.eGilvkllDtAGiReaadkvEklGiekslkaikeadlvlyvlDas.....kpltkddeliitl......kkkkkdlllvlNKiDLa....e 330
                  + +vG +N+GKSSLl a ++    i + ++ tt   + + +e  +G+ v   D  G+   a++    G +  l+ +++++ +ly++Da       p ++ + l+++l      +  ++ +l+v NKiDL      
  MMETSP1061-20121228|40288_1   5 IGLVGFPNAGKSSLLSATSRATPHI-APYPFTTLHPLVGYIEYkDGFRVCAADVPGLIAGASEGRGQGHD-FLRHLERTKALLYIVDAAgidgrDPIEDFEVLVQELsaygdgDMLNRRCLVVANKIDLLledeR 137
                  789**************99988766.7899999999999998737************9999877666644.5678899999999999862222144433233443332222225679************965542 PP

>> TIGR03918  GTP_HydF: [FeFe] hydrogenase H-cluster maturation GTPase HydF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.0   2.9e-07   9.9e-05       9     133 ..       4     137 ..       2     186 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 2.9e-07
    TIGR03918   9 hialfGrrNaGKSsliNaltgqdvaivsdvpGtTtDpvekamEllplGpvvliDTaGldDegeLGelRvektrevlektdlallvvdaeae....leeleeelleelke......kkipvivvlnkidlkeeeke 133
                   i+l+G  NaGKSsl+ a  +  +  ++ +p tT  p    +E ++   v   D +Gl   ++ G+   +   + le+t   l++vda+      + e  e l++el++       +  ++vv+nkidl  e+++
  MMETSP1061-20121228|40288_1   4 DIGLVGFPNAGKSSLLSATSR-ATPHIAPYPFTTLHPLVGYIEYKDGFRVCAADVPGLIAGASEGRGQGHDFLRHLERTKALLYIVDAAGIdgrdPIEDFEVLVQELSAygdgdmLNRRCLVVANKIDLLLEDER 137
                  69**************99665.5566789********************************************************99863201112222233444444311111146677888888887766544 PP

>> TIGR00437  feoB: ferrous iron transport protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.6e-06   0.00056       1      85 [.       9      93 ..       9      97 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.6e-06
    TIGR00437  1 GnpNvGKstlfnaLtgsnqkvgNwpGvTVekkegklelkge.dieivDlPGiYsLttvsldEkvardylln.ekadLvvnvvdasnl 85
                 G pN GKs+l+ a + +  +++ +p +T     g++e+k+  ++   D+PG+      s+     +d+l + e++  ++ +vda+ +
  MMETSP1061-20121228|40288_1  9 GFPNAGKSSLLSATSRATPHIAPYPFTTLHPLVGYIEYKDGfRVCAADVPGLI--AGASEGRGQGHDFLRHlERTKALLYIVDAAGI 93
                 77************************************974389999****84..45555556667776532667777777777665 PP

>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.7e-05    0.0093      19     172 ..       3     164 ..       1     179 [. 0.71

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.7e-05
    TIGR03598  19 peiafaGrSNvGKSsliNaLtnrkklartSktPGrTq..linffevneel..rlvDlPGYGyakvskeekekwqklieeYLekrenLkgvvll..vDirhelkelDlellellkea.....kipvlvvltKaDklkkselkkalkkvkkelkke..eekvevllfSs 172
                  ++i ++G  N+GKSsl+ a  +  +  +++  P  T   l+ + e ++ +     D+PG   a +s+  + + +++  ++Le++++L  +v    +D r ++++ +  + el ++      ++++lvv++K+D l + e+++   k+++++++   + +++v+ +S+
  MMETSP1061-20121228|40288_1   3 ADIGLVGFPNAGKSSLLSATSR--ATPHIAPYPFTTLhpLVGYIEYKDGFrvCAADVPGL-IAGASE-GRGQGHDF-LRHLERTKALLYIVDAagIDGRDPIEDFEVLVQELSAYGdgdmlNRRCLVVANKIDLLLEDERNEIFGKLQTRAEEVgiRMETDVIGISA 164
                  6799*************98554..468999999999622588889999661155799997.344443.33343444.4567777777777643337889999999988888876543334478999*********99999999999998887764444455555555 PP

>> TIGR03596  GTPase_YlqF: ribosome biogenesis GTP-binding protein YlqF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.0   0.0   0.00051      0.17     123     136 ..       7      20 ..       3      61 .. 0.90
   2 ?    3.6   0.0     0.023       7.8      48      78 ..     119     149 ..      94     164 .. 0.86

  Alignments for each domain:
  == domain 1    score: 9.0 bits;  conditional E-value: 0.00051
    TIGR03596 123 vvGiPNvGKStliN 136
                   vG+PN GKS+l+ 
  MMETSP1061-20121228|40288_1   7 LVGFPNAGKSSLLS 20 
                  69**********85 PP

  == domain 2    score: 3.6 bits;  conditional E-value: 0.023
    TIGR03596  48 nkprlivlnkaDladpektkkwlkyfeekgk 78 
                  n+++l+v nk Dl  +++ +++  +++++ +
  MMETSP1061-20121228|40288_1 119 NRRCLVVANKIDLLLEDERNEIFGKLQTRAE 149
                  799***********99999998888876554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (202 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.41
# Mc/sec: 650.29
//
Query:       MMETSP1061-20121228|40291_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 368.47
//
Query:       MMETSP1061-20121228|40287_1  [L=572]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (572 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.10s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 2359.31
//
Query:       MMETSP1061-20121228|40301_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 584.52
//
Query:       MMETSP1061-20121228|40310_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1061-20121228|40318_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      133  (0.0324232); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.42
# Mc/sec: 1951.55
//
Query:       MMETSP1061-20121228|40337_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 477.67
//
Query:       MMETSP1061-20121228|40349_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.91
# Mc/sec: 239.32
//
Query:       MMETSP1061-20121228|40355_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00023   18.4   0.1    0.00023   18.4   0.1    1.0  1  TIGR00111 pelota: putative translation factor pelota


Domain annotation for each model (and alignments):
>> TIGR00111  pelota: putative translation factor pelota
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.1   5.7e-08   0.00023     224     272 ..       3      51 ..       1      54 [] 0.93

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 5.7e-08
    TIGR00111 224 kkavlenvstggraGinevlkrgvverilaekrlakeievidelLeela 272
                  +k vl++ s g +  ++ev+  +v+ ++++ +++ +e+ v+++++  + 
  MMETSP1061-20121228|40355_1   3 DKFVLVKASNGHKYALEEVFSDPVICKKIESTKVMEEVAVLQKFMRMMD 51 
                  689*****************************************98765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|40356_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|40356_2  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 339.40
//
Query:       MMETSP1061-20121228|40379_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 671.42
//
Query:       MMETSP1061-20121228|40386_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|40388_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       384  (0.0936129); expected 82.0 (0.02)
Passed bias filter:                      148  (0.03608); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.32
# Mc/sec: 350.60
//
Query:       MMETSP1061-20121228|40395_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1543.26
//
Query:       MMETSP1061-20121228|40405_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 521.01
//
Query:       MMETSP1061-20121228|40438_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 317.97
//
Query:       MMETSP1061-20121228|40435_1  [L=182]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (182 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 800.73
//
Query:       MMETSP1061-20121228|40443_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-38  130.7   0.1      2e-38  129.9   0.0    1.3  1  TIGR00605 rad4: DNA repair protein rad4


Domain annotation for each model (and alignments):
>> TIGR00605  rad4: DNA repair protein rad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.9   0.0     5e-42     2e-38     793    1047 .]      34     317 ..      22     317 .. 0.85

  Alignments for each domain:
  == domain 1    score: 129.9 bits;  conditional E-value: 5e-42
    TIGR00605  793 pilgrltkrddteddellrihsdkplPksisdfKdHPlyvLerhLkkfqalyp.kdaatlgfirGeaVYsrdcvhllksreiwlkkaRvvklGe..qpyKvvKarp...........................rkdrltrteikdedlelfgyeqTeeYePpta.edgivpkNayGNvelFkdsMlPkkavhlrlpgllriakkLnidcanAvvgFdFhrg.askPvldGiiVceefrdvvtaaweedqqvqvekeqekkekrvlgnWkkLikgLlIRerlkkkYgf 1047
                   p  + l++ d  e+ +l +++ ++plP+s + fK HPlyv++  L  ++ l p  +  + g+ +Ge VY r +v +  s++ wl ++R v+  +   p    Kar                            r+ + +   +  ++  l+g++qT+ + P ++  d  +p N++ Nvel    +l  + vhl+l  ++++ak L++ +a+   gF+   g    P + Gi+V e+ +  + +a         ++e+ek ++ +   Wk+L+ g l ++rl+++Yg+
  MMETSP1061-20121228|40443_1   34 PEEAMLMDVDRQEESQLEESERNEPLPTSKAAFKKHPLYVIRSVLNSTEVLHPgAKKRIRGMFKGELVYLRSDVETALSAKRWLYEGRRVRDSQlkTPALKTKARKprasrgfkaletygvgesndgsedfraRQIQEASEPLDPQQCFLYGSWQTDPWGPDPVgPDDPIPVNEHRNVEL---ELLNPGLVHLELYKVAKVAKRLGLPYAPCLLGFENGSGgNRVPTIRGIVVHEHNEVLLCEAHAAMADQLRREEEEKRRRAIRLRWKRLLVGVLTKDRLEREYGK 317 
                   55567889999******************************************9999999******************************9986224555556665899*****************877773333333333344456779***********99989*************9...578889****************************98776999*******98876666666655555555566667777788899******************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 1770.85
//
Query:       MMETSP1061-20121228|40453_1  [L=129]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.032   12.1   0.2       0.54    8.2   0.0    2.4  3  TIGR00489 aEF-1_beta: translation elongation factor aEF-1 beta


Domain annotation for each model (and alignments):
>> TIGR00489  aEF-1_beta: translation elongation factor aEF-1 beta
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0      0.27   1.1e+03      21      39 ..      10      28 ..       2      31 .. 0.53
   2 ?    1.5   0.0     0.016        65      65      81 ..      53      69 ..      39      74 .. 0.78
   3 ?    8.2   0.0   0.00013      0.54      65      84 ..     102     121 ..      79     125 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.27
    TIGR00489 21 klkekikevleegveirdl 39
                 k k      ++egve   +
  MMETSP1061-20121228|40453_1 10 KQKTSTMVTITEGVEFDTI 28
                 4444444556666766555 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.016
    TIGR00489 65 eaieeelaeiegvesve 81
                 ++ + ++  i+gv+sv 
  MMETSP1061-20121228|40453_1 53 DETKADIKAIDGVKSVQ 69
                 56677888999999986 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.00013
    TIGR00489  65 eaieeelaeiegvesveved 84 
                  ea  e++ +i+gv+ ve++ 
  MMETSP1061-20121228|40453_1 102 EAFLEKIKKIDGVSVVETQT 121
                  788999***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (129 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      188  (0.0458313); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 709.44
//
Query:       MMETSP1061-20121228|40468_1  [L=164]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (164 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 832.55
//
Query:       MMETSP1061-20121228|40472_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.14s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 403.30
//
Query:       MMETSP1061-20121228|40473_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 413.97
//
Query:       MMETSP1061-20121228|40466_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.26
# Mc/sec: 2274.27
//
Query:       MMETSP1061-20121228|40463_1  [L=907]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.22s 00:00:00.55 Elapsed: 00:00:00.46
# Mc/sec: 2602.48
//
Query:       MMETSP1061-20121228|40489_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.1e-05   21.9   0.1    9.1e-05   20.4   0.0    1.7  1  TIGR00369 unchar_dom_1: uncharacterized domain 1
     0.0021   16.1   0.1      0.011   13.8   0.0    2.0  1  TIGR02286 PaaD: phenylacetic acid degradation protein PaaD


Domain annotation for each model (and alignments):
>> TIGR00369  unchar_dom_1: uncharacterized domain 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.0   4.4e-08   9.1e-05      26      83 ..     149     218 ..     130     240 .. 0.65

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 4.4e-08
    TIGR00369  26 ertlqp.igsvHGGvlaaLadtagsla.aalt.........keegkavvtlelnvnylrpareG.klrAi 83 
                    +l+   g vHGG+l+ + d ++  a   ++         k++ +  vt++lnv++ +p+ eG k+r +
  MMETSP1061-20121228|40489_1 149 GDHLNGhSGIVHGGILSLMFDDLMGFAcEEVMkknsrqsdgKQQRQIPVTANLNVDFRKPVLEGiKVRME 218
                  34555559********99998776444123331111111112345678****************999865 PP

>> TIGR02286  PaaD: phenylacetic acid degradation protein PaaD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   5.2e-06     0.011      22      88 ..     147     227 ..     130     235 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5.2e-06
    TIGR02286  22 vredmlngh.gtahGGllfalADsaFAlac......Ns.......ageaaVAaevtidflrparagevlvAeAkevsrsgr 88 
                     d+lngh g+ hGG+l  + D    +ac      Ns       + +  V a+ ++df +p  +g ++  e + ++r+gr
  MMETSP1061-20121228|40489_1 147 KFGDHLNGHsGIVHGGILSLMFDDLMGFACeevmkkNSrqsdgkqQRQIPVTANLNVDFRKPVLEGIKVRMEVNLEHREGR 227
                  3469*****779*************99999444333331111111223457777777777777777777666666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1385.89
//
Query:       MMETSP1061-20121228|40493_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 472.96
//
Query:       MMETSP1061-20121228|40505_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 270.58
//
Query:       MMETSP1061-20121228|40512_1  [L=492]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00073   16.6   0.0       0.07   10.1   0.0    2.9  3  TIGR02721 ycfN_thiK: thiamine kinase


Domain annotation for each model (and alignments):
>> TIGR02721  ycfN_thiK: thiamine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.6   0.0    0.0033        14       4      32 ..      92     120 ..      89     135 .. 0.82
   2 ?   -1.0   0.0     0.041   1.7e+02     143     160 ..     302     319 ..     276     322 .. 0.83
   3 !   10.1   0.0   1.7e-05      0.07     153     193 ..     334     372 ..     333     396 .. 0.81

  Alignments for each domain:
  == domain 1    score: 2.6 bits;  conditional E-value: 0.0033
    TIGR02721   4 lsgGLtneswkiekegisfvaRrqskvek 32 
                  l+gGL+n+ + i+++ +++++R + + + 
  MMETSP1061-20121228|40512_1  92 LTGGLSNHLFLISNDAKTVLVRIHPDDDD 120
                  68*****************9998776665 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.041
    TIGR02721 143 plklallHlDvhaeNlvk 160
                  + ++a  H+D    N+++
  MMETSP1061-20121228|40512_1 302 IRRVAVTHMDCQPLNILI 319
                  557999********9986 PP

  == domain 3    score: 10.1 bits;  conditional E-value: 1.7e-05
    TIGR02721 153 vhaeNlvkteqGlklIDWEYAsdgDialeLaavlrandeeq 193
                  v+a  + ++++ l+lID+EYA+   +a ++a ++ +    +
  MMETSP1061-20121228|40512_1 334 VGAADVARGSNRLRLIDYEYAGWNPVAADIANTFCEY--CE 372
                  677778889999*******************999875..33 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (492 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 2029.33
//
Query:       MMETSP1061-20121228|40527_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 368.47
//
Query:       MMETSP1061-20121228|40536_1  [L=298]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (298 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.09s 00:00:00.26 Elapsed: 00:00:00.30
# Mc/sec: 1311.09
//
Query:       MMETSP1061-20121228|40551_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       238  (0.0580205); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 339.40
//
Query:       MMETSP1061-20121228|40554_1  [L=130]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (130 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 779.94
//
Query:       MMETSP1061-20121228|40584_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 364.54
//
Query:       MMETSP1061-20121228|40588_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 538.96
//
Query:       MMETSP1061-20121228|40591_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.91    4.9  16.1       0.96    4.8  11.2    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        1.7    4.1  17.8        1.7    4.0  12.4    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
        3.5    3.8  13.1        3.7    3.7   9.1    1.0  1  TIGR03185 DNA_S_dndD: DNA sulfur modification protein DndD
        4.1    5.1  12.4        4.7    4.9   8.6    1.1  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.8  11.2   0.00093      0.96     322     429 ..       5     111 ..       1     114 [] 0.74

  Alignments for each domain:
  == domain 1    score: 4.8 bits;  conditional E-value: 0.00093
    TIGR02169 322 eerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkae 429
                  +++l+ka++e+ +++ ++e+ +++i++ ++  ++  e+   l e + e+ +el++v  + ae+ ++  ++k+  e+++++  +l  e++r     +rl +  ++l ++
  MMETSP1061-20121228|40591_1   5 NQQLRKANEEL-RTQLRAEQQQQQIHHSAAAAASTDENSPPLSEARPEVLRELNQVRIRLAETERKNRQYKRIAEDAQRKARQLVHEQERAGSAHRRLVKMEHDLSEA 111
                  23444444444.566778888888888888888888888888888888888999999999999999999998889999998888888888888777777766666655 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0  12.4    0.0017       1.7     311     407 ..       5     103 ..       1     114 [] 0.28

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0017
    TIGR02168 311 leqlekeleeleeqleeleskke..eleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerlea 407
                   +ql+k +eel +ql+ ++++++  ++++++a+ +e+   l+e   ++  el++ +  l+e e++++++++ +e+++++ ++l ++++++ +  +rl +
  MMETSP1061-20121228|40591_1   5 NQQLRKANEELRTQLRAEQQQQQihHSAAAAASTDENSPPLSEARPEVLRELNQVRIRLAETERKNRQYKRIAEDAQRKARQLVHEQERAGSAHRRLVK 103
                  223333333333332222222110022222222223333333333333333333333333333333333333333333333333333332222222222 PP

>> TIGR03185  DNA_S_dndD: DNA sulfur modification protein DndD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.7   9.1    0.0036       3.7     387     480 ..       6      99 ..       1     113 [. 0.68

  Alignments for each domain:
  == domain 1    score: 3.7 bits;  conditional E-value: 0.0036
    TIGR03185 387 rekqdaksqLlkeleeleeelaeldkkietvpdeek.vaelleeleeaeeevakseveieektekleelkeaieelrkelkektkqkedaeeler 480
                  +++++a+++L + +   e++++++++  ++++++++    l e++ e  +e+ +++  ++e+++k  + k+  e++++++++ ++++e a  ++r
  MMETSP1061-20121228|40591_1   6 QQLRKANEELRT-QLRAEQQQQQIHHSAAAAASTDEnSPPLSEARPEVLRELNQVRIRLAETERKNRQYKRIAEDAQRKARQLVHEQERAGSAHR 99 
                  334444555555.444566667777766666666550557999999999*******999999999999999999988888777776666654443 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.9   8.6    0.0046       4.7      68     161 ..       6     102 ..       1     113 [. 0.53

  Alignments for each domain:
  == domain 1    score: 4.9 bits;  conditional E-value: 0.0046
    TIGR03499  68 kaleeaepkklskaeekeekeke.aeekaaeaaqeaekkleeaeeelrkelkalkellekqlselal..eeedperakllkklleagvseelarell 161
                  ++l++a+++ + + ++++++++  ++ +aa+++ e++++l+ea+ e+ +el++++  l ++ ++ ++  +  +  ++k+ +  +e++   +  r+l+
  MMETSP1061-20121228|40591_1   6 QQLRKANEELRTQLRAEQQQQQIhHSAAAAASTDENSPPLSEARPEVLRELNQVRIRLAETERKNRQykRIAEDAQRKARQLVHEQERAGSAHRRLV 102
                  2222333333333333333333303344445555667777777799999999999999999988877854444444444444444444444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       367  (0.0894686); expected 82.0 (0.02)
Passed bias filter:                      191  (0.0465627); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.27
# Mc/sec: 557.29
//
Query:       MMETSP1061-20121228|40590_1  [L=375]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-08   29.8   2.4     0.0017   15.2   0.1    3.4  3  TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
     0.0076   13.5   1.1       0.49    7.6   0.1    2.7  3  TIGR04182 glyco_TIGR04182: glycosyltransferase, TIGR04182 family


Domain annotation for each model (and alignments):
>> TIGR03937  PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.9   0.0     7e-05      0.14      26      64 ..      31      69 ..       7      84 .. 0.65
   2 !   15.2   0.1   8.4e-07    0.0017      72     136 ..     121     205 ..     101     219 .. 0.70
   3 ?   -3.9   0.1      0.51     1e+03     301     342 ..     312     353 ..     303     365 .. 0.67

  Alignments for each domain:
  == domain 1    score: 8.9 bits;  conditional E-value: 7e-05
    TIGR03937 26 llerkeklekkekleleevpkvsllvpcynegenveeti 64
                 +le   ++ + ++ +++e p +sl++p+yne++ +   i
  MMETSP1061-20121228|40590_1 31 HLEWDVEEMTLSDAQTSEPPLLSLVIPAYNEQDRIPIMI 69
                 3444445556677889999*************9874333 PP

  == domain 2    score: 15.2 bits;  conditional E-value: 8.4e-07
    TIGR03937  72 ypnleviainDGskDdtaeildklakk...........ed.........rlrvihleenqGkaaalneglkaakseylvciDgDa 136
                   p++e i++nDGs+D+t +++ k  ++           ++         + +++ l++n+Gk  a+++g++ a+  + + +D+D 
  MMETSP1061-20121228|40590_1 121 KPKVEWIIVNDGSTDETCDTVRKTYEElmagkvtvnveNKsfvasaydwKWKLVSLKRNAGKGGAVKTGMNLAQGMFQLMVDADG 205
                  5899*************99887643321111111111111111112222457799999999999999999999999999999995 PP

  == domain 3    score: -3.9 bits;  conditional E-value: 0.51
    TIGR03937 301 iWayslllllilllikvlvldealeveslsllelsglvlvli 342
                   Wa+ + ++l++  +++ v++ a++++++   +ls+  l+l+
  MMETSP1061-20121228|40590_1 312 RWAFDTEIVLLCDRVSIDVIEVAVRWKEIDGSKLSTSKLALA 353
                  588888888888877777777777777776665555544443 PP

>> TIGR04182  glyco_TIGR04182: glycosyltransferase, TIGR04182 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.0      0.57   1.2e+03       4      21 ..      54      71 ..      53      74 .. 0.82
   2 !    7.6   0.1   0.00024      0.49      54      85 ..     176     207 ..     165     227 .. 0.85
   3 !    3.6   0.0    0.0039         8     135     193 ..     280     340 ..     249     357 .. 0.73

  Alignments for each domain:
  == domain 1    score: -3.5 bits;  conditional E-value: 0.57
    TIGR04182  4 vliPtlneaatigeviee 21
                 ++iP++ne++ i  +i+e
  MMETSP1061-20121228|40590_1 54 LVIPAYNEQDRIPIMIRE 71
                 689******999887765 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00024
    TIGR04182  54 aqsGkGkGqavreavelidkpyvllldgdgty 85 
                   +   GkG av+ +++l +  + l++d+dg+ 
  MMETSP1061-20121228|40590_1 176 LKRNAGKGGAVKTGMNLAQGMFQLMVDADGAT 207
                  56678************************975 PP

  == domain 3    score: 3.6 bits;  conditional E-value: 0.0039
    TIGR04182 135 iiygkelediLsGyraftres....ikrleLkeeGfeietelavesvkkelrvevvpitykkr 193
                  ++ +++++d   G++ ft+++    ++ l+L++  f  +te+   + + ++ v +v +++k+ 
  MMETSP1061-20121228|40590_1 280 LFVSTKVHDTQCGFKLFTKAAscaiFQTLHLRRWAF--DTEIVLLCDRVSIDVIEVAVRWKEI 340
                  34578999*********9976333356667766666..6889999999999999999998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (375 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1455.76
//
Query:       MMETSP1061-20121228|40633_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 409.86
//
Query:       MMETSP1061-20121228|40631_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-16   57.2   3.5    5.1e-16   56.8   2.4    1.2  1  TIGR01476 chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
    1.1e-11   42.7   3.0    1.5e-11   42.3   2.1    1.2  1  TIGR02056 ChlG: chlorophyll synthase ChlG
    4.2e-09   34.1   3.6    5.5e-09   33.7   2.5    1.1  1  TIGR01475 ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
    0.00047   17.4   1.9    0.00071   16.8   1.4    1.3  1  TIGR02235 menA_cyano-plnt: 1,4-dihydroxy-2-naphthoate phytyltransferase


Domain annotation for each model (and alignments):
>> TIGR01476  chlor_syn_BchG: bacteriochlorophyll/chlorophyll synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.8   2.4     5e-19   5.1e-16      36     217 ..      91     278 ..      49     320 .. 0.73

  Alignments for each domain:
  == domain 1    score: 56.8 bits;  conditional E-value: 5e-19
    TIGR01476  36 flklLlgmllaGPlltGlsqavndyaDrdvDainePqrpiPsGaislrevlililvltvlglavalvlgrwvivlltvlGvvlaliyslePiklkrngWlGnalvals.....yvglaWlaGhavfaa..ltleivvvaLlyslaaaGilvlnDfksveGDrklGlrslpvalGvkvaaklavvvidva 217
                  ++++++gm+ +  l   +   +n+ +D+++D +n+P  p+ sG++s + +   +l  +++g  +   + +++++ l  +G++l liys++Pi+ k+n  +    +a         g+ +    av aa   ++++  +a   +  a+ i+v  D+  +eGD+ + + +l+  lGvk+ a+ a+v ++  
  MMETSP1061-20121228|40631_1  91 LPRAFIGMI-SLLLGNVFIVGINQIYDKEIDEMNKPFLPVASGEMSKNVAWAAVLTSGAMGPILVKKFFPHLLFQLYSFGLFLGLIYSVPPIRTKKNPLMAGLTIATVrgfllNFGVYYAVKDAVGAAfaWSPKVSFIARFMTAFATVIAVTKDLPDIEGDKAYQIDTLATRLGVKRIAQGATVCLGAN 278
                  333333432.223344466779************************999999888889998555555556667************************998877776541111123444555556656533455677789899999999*****************************999888877654 PP

>> TIGR02056  ChlG: chlorophyll synthase ChlG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.3   2.1   1.5e-14   1.5e-11      59     238 ..      97     280 ..      38     313 .. 0.71

  Alignments for each domain:
  == domain 1    score: 42.3 bits;  conditional E-value: 1.5e-14
    TIGR02056  59 mllsgplltgytqtlndfydreidainepyrpipsgaisvpevvtqvvllllaglavafildlwaghetpt.vtvlalfgsllayiysapplklkqngwlgnyalgasyial....pwwagqalfg.el..tpdvvvltllyslaglgiaivndfksvegdralglqslpvafgieta...kwicvvaidv 238
                   ++s  l   +   +n+ yd+eid +n+p+ p+ sg +s+   v+   +l  + ++   il     + +p  ++ l  fg +l  iys pp++ k+n  +   ++ +    l     ++a +   g  +  +p+v  ++ + +     ia+ +d+  +egd+a  +++l   +g++     + +c++a  v
  MMETSP1061-20121228|40631_1  97 GMISLLLGNVFIVGINQIYDKEIDEMNKPFLPVASGEMSKN--VAWAAVLTSGAMGP--IL---VKKFFPHlLFQLYSFGLFLGLIYSVPPIRTKKNPLMAGLTIATVRGFLlnfgVYYAVKDAVGaAFawSPKVSFIARFMTAFATVIAVTKDLPDIEGDKAYQIDTLATRLGVKRIaqgATVCLGANYV 280
                  344444444566789***********************975..44445555554443..33...34556651577999********************99988776543222111235666555552341156888888888888889**************************87541114677766554 PP

>> TIGR01475  ubiA_other: putative 4-hydroxybenzoate polyprenyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.7   2.5   5.4e-12   5.5e-09      34     259 ..      90     328 ..      58     340 .. 0.79

  Alignments for each domain:
  == domain 1    score: 33.7 bits;  conditional E-value: 5.4e-12
    TIGR01475  34 slkklililvalvsaRtaamavnrlideeiDakNPRtknrelvsGkiskkeavtliilslilf.liasyflNklafiLspvvllvliiypy....lKRftalahlvLglvlg.lavlagavavigeisi....llvavllvigvvfwvagfDliyaiqDlefDkknglksiparfGvkaalkiaslshvitvvlllllgllvke.....gklallallliglilvyehslvkpkdlskiqk 259
                   l  +++++++l     +   +n++ d+eiD+ N  +   ++ sG++sk+ a++ ++ s ++  +++  f+ +l f L    l++ +iy+     +K+  ++a l ++ v g l  ++++ av +++          +++   ++ ++    +   ++D+e Dk+ ++ +++ r+Gvk+  + a+++     v  +l+g l+k+      + ++ + ++ + +l++ ++ ++p+++++++k
  MMETSP1061-20121228|40631_1  90 LLPRAFIGMISLLLGNVFIVGINQIYDKEIDEMN--KPFLPVASGEMSKNVAWAAVLTSGAMGpILVKKFFPHLLFQLYSFGLFLGLIYSVppirTKKNPLMAGLTIATVRGfLLNFGVYYAVKDAVGAafawSPKVSFIARFMTAFATVIAVTKDLPDIEGDKAYQIDTLATRLGVKRIAQGATVCLGANYVHAILTGALAKStgafrMVPMIGGHMALASVLIFRYKQLNPESMASVKK 328
                  466788889999999999999************9..56789****************999986267789********************85444599999*******99987256799999****999655442222222222333334455677899********************************999999999999986443222233345667788999999999877776654 PP

>> TIGR02235  menA_cyano-plnt: 1,4-dihydroxy-2-naphthoate phytyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   1.4   6.9e-07   0.00071      82     259 ..     138     321 ..      80     338 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.9e-07
    TIGR02235  82 vlllanliLliGlvvilalssraqitvlalvllaifLGylyqGPPfrLgykGLGellcllaf.GPlaiaaallaqsq....slslillkaailvG.....lattliLfcshfhqvedDkaagkkspvvrlGtkraakivtwvvlllyvvlll.avilgllPvtvllalaslPlavkLirllkeshnkPe 259
                  v + a  +L  G ++ + +++   + +++l + ++fLG  y  PP r   + L   l++ +  G l     ++a ++         ++ + ++         +t+i  +++   +e Dka++  ++  rlG kr a+  t+++   yv  +l + + +      ++ +++  +a+  +   ++++ +Pe
  MMETSP1061-20121228|40631_1 138 VAWAA--VLTSGAMGPILVKKFFPHLLFQLYSFGLFLGLIYSVPPIRTKKNPLMAGLTIATVrGFLLNFGVYYAVKDavgaA---FAWSPKVSFIarfmtAFATVIAVTKDLPDIEGDKAYQIDTLATRLGVKRIAQGATVCLGANYVHAILtGALAKSTGAFRMVPMIGGHMALASVLIFRYKQLNPE 321
                  44433..566777777777777778899**********************99988777766526666677777776643332...44444443322333377789999*****************************9999999999866541344444444445555555555555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.23
# Mc/sec: 1991.31
//
Query:       MMETSP1061-20121228|40645_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 494.96
//
Query:       MMETSP1061-20121228|40637_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-10   37.8   0.0    4.9e-10   37.0   0.0    1.3  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
      5e-09   34.1   0.0    1.5e-08   32.6   0.0    1.7  2  TIGR02072 BioC: biotin biosynthesis protein BioC
     0.0002   18.6   0.0    0.00033   17.9   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    0.00043   17.9   5.3    0.00069   17.2   0.3    3.1  3  TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
     0.0014   16.1   9.9      0.012   13.0   1.0    3.3  3  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW
     0.0019   15.4   0.0       0.01   13.0   0.0    2.1  3  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
      0.009   11.7   5.3      0.013   11.1   0.1    2.7  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
  ------ inclusion threshold ------
      0.012   13.7   0.8        2.1    6.5   0.0    2.4  2  TIGR01951 nusB: transcription antitermination factor NusB


Domain annotation for each model (and alignments):
>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.0   0.0   9.5e-13   4.9e-10      56     133 ..     328     404 ..     321     429 .. 0.86

  Alignments for each domain:
  == domain 1    score: 37.0 bits;  conditional E-value: 9.5e-13
    TIGR02021  56 kkvlDAGCGtGllsielAkrGaivkavDiseklvelarkraekedeaenveFevndleslegkfDavvalDvlihYpa 133
                  + vlDAGCGtGl+ +++ +   +  +vD+se+++++a+k  +k    e++   v ++  ++     +va D+ i++ +
  MMETSP1061-20121228|40637_1 328 SSVLDAGCGTGLVGEQFRNISSHLIGVDLSEAILDEAEKLRPKLY-DERIVGDVTEIIRQKKPLSLIVAADSFIYFGD 404
                  689**********************************98877777.59***************************974 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       1.5   7.6e+02     204     228 ..     274     296 ..     241     305 .. 0.63
   2 !   32.6   0.0   2.9e-11   1.5e-08      36     133 ..     328     425 ..     303     432 .. 0.91

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 1.5
    TIGR02072 204 sqksrlltrkklkalleryeqefes 228
                  + k+    ++++k+l+++y+q+fe 
  MMETSP1061-20121228|40637_1 274 TMKR--ADNSYVKTLFDDYAQNFEH 296
                  3333..6788889999999998875 PP

  == domain 2    score: 32.6 bits;  conditional E-value: 2.9e-11
    TIGR02072  36 akvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls..nvqficgdieklplekksfDlivSnlalQWlddlsevlaelarvlkpgGllafs 133
                  ++vLd+GcGtG++ ++ ++    ++li +D+se  l  a+k  +   ++ i gd+ ++  +kk + liv++ ++  + dl+ +++++++ l+ ++++af+
  MMETSP1061-20121228|40637_1 328 SSVLDAGCGTGLVGEQFRNI--SSHLIGVDLSEAILDEAEKLRPklYDERIVGDVTEIIRQKKPLSLIVAADSFIYFGDLEPLFDSIQEGLDDDAYIAFT 425
                  59*********999998765..5567**************9999998899***********************************************997 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   6.4e-07   0.00033      51      89 ..     328     366 ..     295     390 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 6.4e-07
    TIGR01983  51 lkvlDvGcGgGllseslarlgaevtgiDlseelievAkl 89 
                   +vlD GcG Gl+ e + + + + +g+Dlse +++ A++
  MMETSP1061-20121228|40637_1 328 SSVLDAGCGTGLVGEQFRNISSHLIGVDLSEAILDEAEK 366
                  589******************************999975 PP

>> TIGR02552  LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.4   0.0      0.37   1.9e+02      63      77 ..      95     109 ..      75     126 .. 0.82
   2 !   17.2   0.3   1.4e-06   0.00069      30      86 ..     140     197 ..     129     202 .. 0.85
   3 ?    0.2   0.0      0.23   1.2e+02     102     121 ..     242     261 ..     213     282 .. 0.65

  Alignments for each domain:
  == domain 1    score: -0.4 bits;  conditional E-value: 0.37
    TIGR02552  63 qalkeyeeAiaaYal 77 
                  +al +ye+Ai aY++
  MMETSP1061-20121228|40637_1  95 KALLHYEKAISAYEA 109
                  567789999999986 PP

  == domain 2    score: 17.2 bits;  conditional E-value: 1.4e-06
    TIGR02552  30 qqgkyeeAeklFqlLaaldpteakywlgLaaclq.alkeyeeAiaaYalaaaldlddp 86 
                  q+ + ++A++++   ++ldp+ +  w+ L+++++   k+y+eA++aY  a+ l  ++ 
  MMETSP1061-20121228|40637_1 140 QESDAAKAVNMYGRAVTLDPNLWAAWANLGSVFHdNFKNYDEALQAYNKAYELLTEHD 197
                  667788999**********************988357*************99876554 PP

  == domain 3    score: 0.2 bits;  conditional E-value: 0.23
    TIGR02552 102 keeAlkaLklaieiaeekee 121
                  ke+A  a+ la++ + ++ +
  MMETSP1061-20121228|40637_1 242 KEMATHAFSLAVQFDSNNVS 261
                  55555555555555554433 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.6   0.1     0.017       8.6      70      96 ..      81     108 ..      74     118 .. 0.85
   2 !   13.0   1.0   2.4e-05     0.012      74     140 ..     135     205 ..     121     250 .. 0.64
   3 ?    4.3   0.2     0.011       5.4      49      91 ..     244     285 ..     240     290 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.017
    TIGR02521  70 alAlyyqqlg.elekAeesfrkAltlkp 96 
                   lA +y ++g ++ekA  +++kA++  +
  MMETSP1061-20121228|40637_1  81 NLATAYSTIGgQDEKALLHYEKAISAYE 108
                  68999*9998899**********98765 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2.4e-05
    TIGR02521  74 yyqqlg..elekAeesfrkAltlkpnngdvlNNYGtFLcqq.kkyeeAeqqfeaAiedpk.YeqparsyeN 140
                  y ++l+  +  kA + + +A+tl+pn  ++  N G+    + k+y+eA q +++A+e  +  ++p ++ + 
  MMETSP1061-20121228|40637_1 135 YAMELQesDAAKAVNMYGRAVTLDPNLWAAWANLGSVFHDNfKNYDEALQAYNKAYELLTeHDNPTDPPSE 205
                  45556622455667899999999999999999999755544169999999999999976646666655555 PP

  == domain 3    score: 4.3 bits;  conditional E-value: 0.011
    TIGR02521  49 kAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkA 91 
                   A+++   A++ d+++ +a+++lA +  +    ++A++s+ k 
  MMETSP1061-20121228|40637_1 244 MATHAFSLAVQFDSNNVSAKHMLATVTADA-TMKRADNSYVKT 285
                  68888999****************998775.567888888765 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.0      0.64   3.3e+02     119     156 ..     114     151 ..     113     158 .. 0.80
   2 !   13.0   0.0     2e-05      0.01      41      85 ..     328     371 ..     317     388 .. 0.83
   3 ?   -3.4   0.0       2.1   1.1e+03     111     127 ..     421     438 ..     418     440 .. 0.74

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.64
    TIGR01934 119 vtdiekaLkelaRVlkpggrlvilefskpknallkkly 156
                  v+d + +++e+  ++ + + ++ +e+++ + a + ++y
  MMETSP1061-20121228|40637_1 114 VKDENDVVEEARSIVSQTAFFYAMELQESDAAKAVNMY 151
                  6788999999999************9999875443443 PP

  == domain 2    score: 13.0 bits;  conditional E-value: 2e-05
    TIGR01934  41 ekvlDvatGtGdlaielakkaeakvtgvDlseemLevakkkakek 85 
                  + vlD  +GtG +  ++ +    +++gvDlse++L+ a+k  ++ 
  MMETSP1061-20121228|40637_1 328 SSVLDAGCGTGLVGEQFRNI-SSHLIGVDLSEAILDEAEKLRPKL 371
                  689********999887665.589**************9976655 PP

  == domain 3    score: -3.4 bits;  conditional E-value: 2.1
    TIGR01934 111 tiafGlRNvtdiek.aLk 127
                   iaf l Nv+d ++ aL+
  MMETSP1061-20121228|40637_1 421 YIAFTLENVSDEDEaALQ 438
                  599******998761455 PP

>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.0   0.0      0.12        61     193     238 ..      30      75 ..      22      90 .. 0.63
   2 !   11.1   0.1   2.6e-05     0.013     610     664 ..     137     192 ..     116     200 .. 0.67
   3 ?    1.4   0.1     0.024        12     482     512 ..     243     273 ..     240     296 .. 0.68

  Alignments for each domain:
  == domain 1    score: -1.0 bits;  conditional E-value: 0.12
    TIGR02917 193 vdAllLkgdlllssgnieeAlaayrkaielkpnaiaallalatill 238
                  ++ +lL+g+ +ls++ +++A   y++ i++  n++++  a + + l
  MMETSP1061-20121228|40637_1  30 AEDYLLLGNTELSRDANAKAIGFYENGIAAFDNDENPPTASSLVTL 75 
                  4446677777777777777777777777766666666555555544 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 2.6e-05
    TIGR02917 610 aqlaakdlkkavesfkkllelqpdsalalllladv.yavaknkakAltslkkaLel 664
                  + l+++d +kav+ +  ++ l+p+  +a + l  v +  +kn+++Al+++ ka el
  MMETSP1061-20121228|40637_1 137 MELQESDAAKAVNMYGRAVTLDPNLWAAWANLGSVfHDNFKNYDEALQAYNKAYEL 192
                  45677777777777777777777777777777654256677777777777777655 PP

  == domain 3    score: 1.4 bits;  conditional E-value: 0.024
    TIGR02917 482 akAreafekALkiepdffpAlanLArldlqe 512
                  + A +af  A + ++++++A + LA++ +++
  MMETSP1061-20121228|40637_1 243 EMATHAFSLAVQFDSNNVSAKHMLATVTADA 273
                  4577788888888888888888887765544 PP

>> TIGR01951  nusB: transcription antitermination factor NusB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0    0.0042       2.1       4      67 ..     123     188 ..     121     194 .. 0.89
   2 ?    5.4   0.1    0.0088       4.5       8      55 ..     247     294 ..     241     298 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0042
    TIGR01951   4 kaRelalqaly..qlelagenveeileelleekeleeedreyakelvrgvlenqeeidelieehlk 67 
                  +aR ++ q+ +  ++el+++++ ++++ + +   l+++  +   +l + +++n +++de ++++ k
  MMETSP1061-20121228|40637_1 123 EARSIVSQTAFfyAMELQESDAAKAVNMYGRAVTLDPNLWAAWANLGSVFHDNFKNYDEALQAYNK 188
                  6889999885444************************************************99865 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0088
    TIGR01951   8 lalqalyqlelagenveeileelleekeleeedreyakelvrgvlenq 55 
                   a+++  q++ ++ +++++l+++++++ ++++d++y+k+l++  ++n 
  MMETSP1061-20121228|40637_1 247 HAFSLAVQFDSNNVSAKHMLATVTADATMKRADNSYVKTLFDDYAQNF 294
                  577788899999999**************************9998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.28
# Mc/sec: 2389.95
//
Query:       MMETSP1061-20121228|40647_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-54  182.2  12.1    5.6e-54  181.3   8.4    1.4  1  TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
  ------ inclusion threshold ------
      0.064    9.8   0.0       0.13    8.8   0.0    1.4  1  TIGR00936 ahcY: adenosylhomocysteinase


Domain annotation for each model (and alignments):
>> TIGR00932  2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.3   8.4   2.7e-57   5.6e-54       1     275 []     157     452 ..     157     452 .. 0.96

  Alignments for each domain:
  == domain 1    score: 181.3 bits;  conditional E-value: 2.7e-57
    TIGR00932   1 llaavlivllarrlripsvvgeliaGvilGpsglglisnselvnllaelGvilLlFliGLeldlerlkkllkkalgvgvlqvlvsfvllalllshllglkle.......................lavvigiilslsstavvvqvLkelnllktraGqlvlgalivqDlavvllLallillasv.saekekvalvllllkvllaflllvllvkyllrpvlrltaeadrselatalsLllvlgsalladllGlsmalGAFlAGvvlseseyrhkleeklepikygvliplFFisvGlsld 275
                  l+a+v +v++++ l+i +v+g l++G++lGp+glgl  nse    l ++G+++LlF  GL l++er+k+l +   g+g+ q+++s + l++l s+l+g  l                         ++ i+ + +lss a+v+  Lke++  + ++G++ l++l++qDl+v +lL++l+lla++  a +++v+l +l+ k+ + f ++++++ y+lr v++ +a+a+++e ++a+sLl+++g+  +ad lGls+  GAF AGv+l+++ yr +++++++p++ g+l+++FFi++G +ld
  MMETSP1061-20121228|40647_1 157 LVASVFVVPVCKSLKIAPVLGFLLVGCVLGPYGLGLFDNSEQDMVLGDFGILFLLFNEGLSLSPERIKELGR-FTGLGAFQLIIS-IGLIFLGSVLFGPILVkyaqeigvplnfkllkplfdnpiESFCIASAGALSSSAFVLPFLKEKDWEERPEGIAGLSILLLQDLSVAPLLVVLPLLAGGpTAPQSAVDLGILVSKATIGFGAVLAAGSYILRYVFDVVASARSTETFVAASLLVAIGMGEVADFLGLSATTGAFAAGVLLASNRYRAQIQADIKPFE-GILLGIFFITAGANLD 452
                  6899***************************************************************99876.6799********.77777777777765555778899***************999*******************************************************99999***********************************************************************************************.*************998 PP

>> TIGR00936  ahcY: adenosylhomocysteinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.8   0.0   6.3e-05      0.13     187     253 ..     636     707 ..     634     716 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.8 bits;  conditional E-value: 6.3e-05
    TIGR00936 187 tgqslldgilratnlliaGktvvvaGyGwvGkGvaerlrGlG.....arvivtevdpikaleaamdGfevvt 253
                  + + + d+ l + nl  +    +++G+G vG+ +   l G+G     ++vi  +++p + l   ++G  vv 
  MMETSP1061-20121228|40647_1 636 CNKDTSDSSLSSSNLSFTEDATIICGFGEVGQEIYRMLDGFGfsgtrSNVICFDLNPKRVLAGSLNGAPVVF 707
                  56778889999999999999******************9998554445799999999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.13s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 3469.43
//
Query:       MMETSP1061-20121228|40652_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-19   68.5   0.0    2.5e-19   67.7   0.0    1.3  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    1.7e-13   48.7   0.0    8.2e-10   36.6   0.0    2.3  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    9.9e-12   42.8   0.0    1.4e-09   35.8   0.0    2.2  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    3.1e-11   40.9   0.3    6.9e-11   39.7   0.1    1.7  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    6.4e-11   39.2   0.0    9.1e-11   38.6   0.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    4.7e-10   37.1   0.0    2.8e-09   34.6   0.0    2.0  2  TIGR02415 23BDH: acetoin reductases
    1.4e-08   32.4   0.4    4.3e-08   30.8   0.0    1.9  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    2.8e-08   31.2   0.0    9.1e-07   26.3   0.0    2.2  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    0.00037   17.8   0.1    0.00061   17.1   0.1    1.3  1  TIGR01500 sepiapter_red: sepiapterin reductase
     0.0012   15.9   0.1     0.0018   15.2   0.1    1.2  1  TIGR02685 pter_reduc_Leis: pteridine reductase
      0.002   15.4   0.1     0.0039   14.5   0.1    1.3  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.7   0.0   6.8e-22   2.5e-19       2     225 ..      51     285 ..      50     326 .. 0.78

  Alignments for each domain:
  == domain 1    score: 67.7 bits;  conditional E-value: 6.8e-22
    TIGR01289   2 qkptviitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkds.........yti...lkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllled.lkksdekdkrliilgsvtanskelagkvpi..kadlgdlsgleaglkaaniamidgkefkaakaykdsklcnmltvrelhrryhdetgivfaslypgcva 225
                  +k+ +i+tg+ +g+g + +k lv +  w v++acr  +ka  a +++    +s          +i   l ldl+ +ds+r+fv    +   ++d+l+ na       + p     + +l   +n lghfll++lll++ l  s+++++ +   gs   n   +  +     +   g ++ +++    +  a+ ++ +      y  skl+++l + el rry ++  ++  ++ pg v 
  MMETSP1061-20121228|40652_1  51 TKKLAIVTGSNTGIGYEVSKRLVREYGWDVILACRSKDKAMIARDKINQIDKStnekknacgKAIvldLVLDLSDFDSIRRFVGAVEKDYDNVDVLINNAGRNTS-GRSP--GNPDLDLMFQSNFLGHFLLTDLLLKNeLLLSSSPKNDVRGGGSKVVNLSSVMHHFSKgdPLAGGAFESIASPDYWKRRAFYNDGKGAPQNVYAASKLAAILHSLELNRRYSEA-QLTAIAVNPGAVN 285
                  58889******************9988*********99998777666532222111111122223223468**************************99987643.3444..567899****************9975455555555555567888888888888887755666799****9987777789999999999**********************876.4666677888875 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.6   0.0   2.2e-12   8.2e-10       1      86 [.      55     152 ..      55     212 .. 0.75
   2 !    9.9   0.0   0.00031      0.12     144     216 ..     247     320 ..     243     339 .. 0.82

  Alignments for each domain:
  == domain 1    score: 36.6 bits;  conditional E-value: 2.2e-12
    TIGR01830   1 alvtGasrgiGkaiakklake.gakvviterskeeka......eelae...elkeagvka..aavkldvsdeeevkelveeveeelgeidilvnnAGi 86 
                  a+vtG++ giG +++k+l +e g +v++  rsk++++      +++ +   e k+a +ka  + ++ld+sd ++++++v +ve++++++d+l+nnAG 
  MMETSP1061-20121228|40652_1  55 AIVTGSNTGIGYEVSKRLVREyGWDVILACRSKDKAMiardkiNQIDKstnEKKNACGKAivLDLVLDLSDFDSIRRFVGAVEKDYDNVDVLINNAGR 152
                  79***************98654999999877766532111111233220003333333441134689*****************************94 PP

  == domain 2    score: 9.9 bits;  conditional E-value: 0.00031
    TIGR01830 144 gqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqiplkrl.gkpeevaaav 216
                   q  YaasK   i  +  l + +++ ++t+ av PG +++d+ + +++ +++ + +++ l +  g+   vaaav
  MMETSP1061-20121228|40652_1 247 PQNVYAASKLAAILHSLELNRRYSEAQLTAIAVNPGAVNSDIWRGFPSWIRRYVFDKVYLTTEeGSEPIVAAAV 320
                  5888****************************************999999999999999876514444455555 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   3.9e-12   1.4e-09       1      87 [.      53     151 ..      53     180 .. 0.78
   2 ?    4.9   0.0      0.01       3.9     146     205 ..     247     306 ..     240     329 .. 0.85

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 3.9e-12
    TIGR01829   1 rvalvtGglgGiGtaickrlakd.Gykvvanvapneer..........akewlqekevegfdvav.vkadvssfeeakaavakveaelGpvdvlvnnaG 87 
                  ++a+vtG+  GiG +++krl+++ G+ v+ ++++++++           k+ +++k++ g+ +++ +  d+s+f++ ++ v  ve++  +vdvl+nnaG
  MMETSP1061-20121228|40652_1  53 KLAIVTGSNTGIGYEVSKRLVREyGWDVILACRSKDKAmiardkinqiDKSTNEKKNACGKAIVLdLVLDLSDFDSIRRFVGAVEKDYDNVDVLINNAG 151
                  68******************9766*****9999854431211111111233344455555555553568*****************************9 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.01
    TIGR01829 146 GqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPv 205
                   q  y+a+k   i  +  l +  ++  +t  ++ PG ++ ++ +  +  +++ + +++ +
  MMETSP1061-20121228|40652_1 247 PQNVYAASKLAAILHSLELNRRYSEAQLTAIAVNPGAVNSDIWRGFPSWIRRYVFDKVYL 306
                  5888**************************************999999999888888765 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.7   0.1   1.9e-13   6.9e-11       2      87 ..      53     151 ..      52     155 .. 0.74
   2 ?   -3.5   0.0       2.7     1e+03     150     184 ..     251     285 ..     247     288 .. 0.69

  Alignments for each domain:
  == domain 1    score: 39.7 bits;  conditional E-value: 1.9e-13
    TIGR01963   2 kvalvtGaasGiglaiakelaaa.Gakvvvndle.......eeaaeaaakeleeag...ge..vlalkadvtkeeeiadlieavaaefgsldiLvnnAG 87 
                  k a+vtG+++Gig++++k+l+++ G +v++   +        ++ ++++k+++e+    g+  vl l++d+++ ++i++ + av++++ ++d+L+nnAG
  MMETSP1061-20121228|40652_1  53 KLAIVTGSNTGIGYEVSKRLVREyGWDVILACRSkdkamiaRDKINQIDKSTNEKKnacGKaiVLDLVLDLSDFDSIRRFVGAVEKDYDNVDVLINNAG 151
                  889*****************9866999999766533334443444455444444331113312456789*****************************9 PP

  == domain 2    score: -3.5 bits;  conditional E-value: 2.7
    TIGR01963 150 YvaaKHglvGltKvlAlEvAetgitanaicPgyvr 184
                  Y a+K + +  +  l     e+++ta a++Pg v+
  MMETSP1061-20121228|40652_1 251 YAASKLAAILHSLELNRRYSEAQLTAIAVNPGAVN 285
                  55555555555555666677888999999999886 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.6   0.0   2.4e-13   9.1e-11     413     532 ..      51     179 ..      43     185 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.6 bits;  conditional E-value: 2.4e-13
    TIGR02632 413 arrvalvtGgasGiGrevarrlvde.Gahvvladldaeaaeavaaelv..dkfGadkava........lkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflva 532
                  ++++a+vtG+ +GiG ev++rlv e G  v+la   +++a    ++++  dk  ++k  a        l+ld+ d ++++  + +v  +y  vd+++nnaG  +s  + +    + dl ++ +  G+fl++
  MMETSP1061-20121228|40652_1  51 TKKLAIVTGSNTGIGYEVSKRLVREyGWDVILACRSKDKAMIARDKINqiDKSTNEKKNAcgkaivldLVLDLSDFDSIRRFVGAVEKDYDNVDVLINNAGRNTSGRSPGN--PDLDLMFQSNFLGHFLLT 179
                  6899*******************886888998876666665555544311444444444456666666**********************************999887765..456777777888888876 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0   7.5e-12   2.8e-09       1      88 [.      53     153 ..      53     177 .. 0.75
   2 ?   -0.2   0.0      0.32   1.2e+02     147     190 ..     248     291 ..     242     302 .. 0.85

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 7.5e-12
    TIGR02415   1 kvalvtGaaqGiGkaiaerLakd.Gfavavadlneetaketakelkekg..........tkava..vkldvsdkseveeaveqaveklGeldvlvnnaGva 88 
                  k+a+vtG+  GiG ++++rL+++ G++v++a   +++a+ +  ++++ +          +ka++  ++ld+sd +++ + v    +++ ++dvl+nnaG +
  MMETSP1061-20121228|40652_1  53 KLAIVTGSNTGIGYEVSKRLVREyGWDVILACRSKDKAMIARDKINQIDkstnekknacGKAIVldLVLDLSDFDSIRRFVGAVEKDYDNVDVLINNAGRN 153
                  79******************9766******99887777776666665431111111111355552245799999************************954 PP

  == domain 2    score: -0.2 bits;  conditional E-value: 0.32
    TIGR02415 147 lsaysstkfavrgltqtaakeLakkgitvnayaPGivktemree 190
                  + +y+++k a         +  ++   t  a +PG v+ ++++ 
  MMETSP1061-20121228|40652_1 248 QNVYAASKLAAILHSLELNRRYSEAQLTAIAVNPGAVNSDIWRG 291
                  67899999988777777888999999999*********999975 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.8   0.0   1.2e-10   4.3e-08       6     142 ..      53     211 ..      49     220 .. 0.71
   2 ?   -3.2   0.0       2.8   1.1e+03     152     187 ..     250     285 ..     245     287 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.8 bits;  conditional E-value: 1.2e-10
    TIGR01832   6 kvalvtGantGlGqgiavgla.eaGadivgvgisel.............setqekvealGrk.flslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkll.........kqGrkgkiiniasll 142
                  k a+vtG+ntG+G  ++  l  e G d++ + +s+              + t+ek +a G+  +l l +dl+d ++++++v  + +  +++d+l+nnaG  r       ++ d d +++ n+   fll+  + k+ l          +G  +k++n++s++
  MMETSP1061-20121228|40652_1  53 KLAIVTGSNTGIGYEVSKRLVrEYGWDVILACRSKDkamiardkinqidKSTNEKKNACGKAiVLDLVLDLSDFDSIRRFVGAVEKDYDNVDVLINNAG--RNTSGRSPGNPDLDLMFQSNFLGHFLLTDLLLKNELllssspkndVRGGGSKVVNLSSVM 211
                  889**************9987257999998876654111111111111123445555666642568999******************************..666677788999999999999999999988766543233332222245678888888876 PP

  == domain 2    score: -3.2 bits;  conditional E-value: 2.8
    TIGR01832 152 sytasksavaGltkllanewakkginvnaiaPGyle 187
                   y+ask a +  +  l   +++ ++   a+ PG ++
  MMETSP1061-20121228|40652_1 250 VYAASKLAAILHSLELNRRYSEAQLTAIAVNPGAVN 285
                  688999887777778888899988888888999776 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.4e-09   9.1e-07       3      91 ..      52     153 ..      50     168 .. 0.73
   2 ?    2.4   0.0     0.048        18     149     188 ..     248     287 ..     241     293 .. 0.89

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 2.4e-09
    TIGR03206   3 dkvaivtgggggiggaicrrfaee.gakvavldlnaeaaekvaaai..........rekggkaea..vavditdrasvdaavaaaeealgpvdvlvnnagwd 91 
                  +k aivtg   gig  + +r+ +e g  v +   +++ a    ++i          +++ gka    +  d++d +s+   v a+e+    vdvl+nnag +
  MMETSP1061-20121228|40652_1  52 KKLAIVTGSNTGIGYEVSKRLVREyGWDVILACRSKDKAMIARDKInqidkstnekKNACGKAIVldLVLDLSDFDSIRRFVGAVEKDYDNVDVLINNAGRN 153
                  689******************999566666555555544333333311111111115667887651246799****************************76 PP

  == domain 2    score: 2.4 bits;  conditional E-value: 0.048
    TIGR03206 149 eavyaackgglvafsktlarelarhgitvnvvcpgptdta 188
                  + vyaa k   +  s  l r ++  ++t   v pg  ++ 
  MMETSP1061-20121228|40652_1 248 QNVYAASKLAAILHSLELNRRYSEAQLTAIAVNPGAVNSD 287
                  67*********************************98765 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.1   1.6e-06   0.00061       2     151 ..      54     209 ..      53     213 .. 0.56

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 1.6e-06
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeie....aevsals......vdlvsldleaakdvedllkaleesikkeeyeri.llinnaGtlgdvskrekelsDsknvqkyy...dsnvtslvvltsellkklkel..qglektvvnlss 151
                  l++vtG+  G+G e++++l++   + g +++L  R+++    ++++i+    ++ +++       v    ldl+    +  +++a+e     ++y+ + +linnaG   ++s r     D + + + +   +  +t l+  + +ll   ++   +g    vvnlss
  MMETSP1061-20121228|40652_1  54 LAIVTGSNTGIGYEVSKRLVR---EYGWDVILACRSKDKAMIARDKINqidkSTNEKKNacgkaiVLDLVLDLSDFDSIRRFVGAVE-----KDYDNVdVLINNAGR--NTSGRSPGNPDLDLMFQSNflgHFLLTDLLLKNELLLSSSPKNdvRGGGSKVVNLSS 209
                  79*****************99...899999***999997766666655544544444441111112234456666666666666655.....4566654899**996..333333323333322211111133344444444444444433322466666777776 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.1   4.9e-06    0.0018       3      93 ..      54     151 ..      52     155 .. 0.73

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 4.9e-06
    TIGR02685   3 aalvtGaakriGrsiavklhqe.Gyrvvlhyrrsaea..asslaael....naeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnas 93 
                   a+vtG+   iG  ++++l +e G+ v+l  r  ++a  a   ++++    n++++ +   +  dl +  s ++s   ++ a  + +   dvl+nna 
  MMETSP1061-20121228|40652_1  54 LAIVTGSNTGIGYEVSKRLVREyGWDVILACRSKDKAmiARDKINQIdkstNEKKNACGKAIVLDLVLDLSDFDSIRRFVGAVEKDYDNVDVLINNAG 151
                  59****************976549*99998765544311333333331111444444444555688888899************************95 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.1     1e-05    0.0039       4     107 ..      53     156 ..      51     160 .. 0.79

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 1e-05
    TIGR03971   4 kvalitGaarGqGraeavrlaae.Gadiiaidlceplsdvvtypaatredlde.taklvealGrkvla.rkadvrkleelravveegveefGrldvvvanaGvlsyg 107
                  k+a++tG+  G G   + rl +e G d+i    c++ ++ +  +    +++d+ t +  +a G+ ++   + d+ +++ +r  v    + +  +dv+++naG  + g
  MMETSP1061-20121228|40652_1  53 KLAIVTGSNTGIGYEVSKRLVREyGWDVILA--CRSKDKAM-IARDKINQIDKsTNEKKNACGKAIVLdLVLDLSDFDSIRRFVGAVEKDYDNVDVLINNAGRNTSG 156
                  89******************99878998864..77775555.566677778761555566777765541567************99999*************76655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      125  (0.0304729); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 2148.78
//
Query:       MMETSP1061-20121228|40666_1  [L=207]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.1    3.2  22.4          7    3.0  15.6    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.0  15.6    0.0017         7     185     284 ..      86     180 ..      56     200 .. 0.57

  Alignments for each domain:
  == domain 1    score: 3.0 bits;  conditional E-value: 0.0017
    TIGR01651 185 afarvvrellaslelaeelgddeesedeedtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeaddddlsdeddedaetpgeakrpd 284
                  afa   +e+l      +e+  dee+ d+ d+d+d+   d++e+++++ e+gde+ +a++   +++ + ++++++   ++d +++e+  +    g  +r++
  MMETSP1061-20121228|40666_1  86 AFAA-QQEILDGYSEEDEVETDEEEGDDCDDDNDN-DTDHDENDAHQIETGDEDKDADNDSGSDDSNTKSNTKSKTKSEDVEREEETVS---RGTKRRAN 180
                  4543.455665555555554444444444433333.33445555666666666666666666666666666555444444444433322...34445544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (207 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 1241.90
//
Query:       MMETSP1061-20121228|40687_1  [L=204]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.1    3.2  11.4        6.7    3.1   7.9    1.1  1  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family


Domain annotation for each model (and alignments):
>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   7.9    0.0016       6.7     295     368 ..      63     139 ..      46     197 .. 0.70

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.0016
    TIGR01645 295 aaaavaaaaatakitaaeavag...aavl...glraqspatassslvtdieakavvssakkeaeevpalpqaapavlkde 368
                   aaa aaaa  a it +e+ ++   aa +   +++  +pa as+ + t+ e+k+v +s   e+e v a+p+   ++ ++ 
  MMETSP1061-20121228|40687_1  63 QAAATAAAATPAAITNQETPSAppvAAEPtlsAPEVATPAAASALVETKPETKTVPAS---EPESVLAIPPMDHQLPAPP 139
                  5788888888899999987665566454411155667888888888899999988544...4554444444443333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (204 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 961.63
//
Query:       MMETSP1061-20121228|40708_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 534.56
//
Query:       MMETSP1061-20121228|40714_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 770.82
//
Query:       MMETSP1061-20121228|40718_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.24
# Mc/sec: 450.96
//
Query:       MMETSP1061-20121228|40724_1  [L=410]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-55  185.8   0.0    4.5e-55  184.7   0.0    1.6  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    9.4e-44  147.4   0.0    1.3e-43  146.9   0.0    1.2  1  TIGR00536 hemK_fam: methyltransferase, HemK family
      1e-29  101.6   0.0    1.4e-29  101.1   0.0    1.1  1  TIGR03704 PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
    5.1e-29   99.3   0.0    7.5e-29   98.8   0.0    1.1  1  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
    1.5e-11   42.1   0.0    3.9e-11   40.8   0.0    1.6  1  TIGR00537 hemK_rel_arch: putative methylase
    7.9e-09   33.7   0.1    2.4e-08   32.1   0.0    1.8  2  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
    1.1e-08   32.7   0.0    1.6e-08   32.2   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    4.9e-07   27.1   0.0    8.5e-07   26.3   0.0    1.3  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    4.4e-06   24.5   0.0    8.3e-06   23.6   0.0    1.4  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    8.6e-06   23.1   0.0    1.5e-05   22.3   0.0    1.4  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00068   16.8   0.0     0.0013   15.9   0.0    1.4  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
  ------ inclusion threshold ------
      0.012   12.7   0.0      0.021   12.0   0.0    1.3  1  TIGR00755 ksgA: dimethyladenosine transferase
      0.024   11.8   0.0      0.036   11.2   0.0    1.2  1  TIGR00477 tehB: tellurite resistance protein TehB
      0.034   11.3   0.0      0.059   10.6   0.0    1.3  1  TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
      0.041   10.8   0.0      0.062   10.2   0.0    1.2  1  TIGR02716 C20_methyl_CrtF: C-20 methyltransferase BchU
      0.063    9.8   0.0      0.092    9.3   0.0    1.2  1  TIGR02987 met_A_Alw26: type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family


Domain annotation for each model (and alignments):
>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  184.7   0.0   1.7e-57   4.5e-55      23     232 ..     151     367 ..     145     405 .. 0.91

  Alignments for each domain:
  == domain 1    score: 184.7 bits;  conditional E-value: 1.7e-57
    TIGR03534  23 eelseeelekfeelverrakgePvayilgekefyglklkvseavLiPRpdTElLveaaleelkkke.klkvlDlgtGsGaIalalakelpdakviavDiseeAlkvarkNakrlglke....veflksdlleal..eekgkfdlivsNPPYipeaekeeleeevrkfEPklALvggedGldlyrriaeeaakllkeggllllEigekqaeavaelle 232
                  + ls+e+++++ee+v+rr+++eP++y+lg+ +f+ +++++++  L PRp+TE+Lv  +++e+k++e +l++lD+g+G+G+I+++lak +pd +v a+D+++ A++++ +Na++   +        +++ l++a   ++++ fd++vsNPPYip++++++l ++v +fE  +AL+gg dG+d++r+i+e+++++ ++++++++E++ ++   ++ell+
  MMETSP1061-20121228|40724_1 151 TVLSAEQAQNLEEMVARREAHEPIQYVLGKWDFLYYTIAIRRPLLCPRPETEELVMMIVDEAKTTEsPLRILDVGCGTGVIGISLAKLVPDSTVEAIDLEPVAIETSLENAREVLNDGgtdrSGSYRATLCSANdyTPDRPFDVVVSNPPYIPRSDIDTLTDDVTRFESDQALCGGTDGMDVIRTIIEKLPSWCNNDAVCWMEVDPSHPTMIEELLS 367
                  678999********************************************************776669*********************************************88776444444455555444477899*********************************************************************999999875 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.9   0.0   5.1e-46   1.3e-43      45     271 ..     148     380 ..     104     398 .. 0.86

  Alignments for each domain:
  == domain 1    score: 146.9 bits;  conditional E-value: 5.1e-46
    TIGR00536  45 flkeelteeekerlkelverrlegvPvaYllgkkeFlglelvvnedvLIPRpeteelvekaleslisqeplkhilDlgtGsGcIalalAleipnaeviavDistdalavaeeNaekl...kleerveliqsnlleslakq...kidlivsNPPYidkedladk.eeevkfEPllALvggkdGlkilkkiieqakeylksngvlllEignsqqkelkellrkkfkiadvelkkd.l 271
                  ++ + l  e+ ++l+e v rr+ ++P++Y+lgk +Fl   + +    L PRpeteelv+    +    e  ++ilD+g+G+G I+++lA  +p+ +v+a+D+ + a++   eNa++    +  +r   ++  l ++   +    +d++vsNPPYi++ d+  + +++ +fE  +AL gg+dG++ ++ iie+ +++ +++ v  +E+ +s   +++ell   f + + e+++d  
  MMETSP1061-20121228|40724_1 148 LRSTVLSAEQAQNLEEMVARREAHEPIQYVLGKWDFLYYTIAIRRPLLCPRPETEELVMMIVDEAKTTESPLRILDVGCGTGVIGISLAKLVPDSTVEAIDLEPVAIETSLENAREVlndGGTDRSGSYRATLCSANDYTpdrPFDVVVSNPPYIPRSDIDTLtDDVTRFESDQALCGGTDGMDVIRTIIEKLPSWCNNDAVCWMEVDPSHPTMIEELLS--FPGREGETGGDdA 380
                  5677899999**************************************************777777777669*****************************************9876111233455566666666554447789******************988899*************************************************887..5555666665543 PP

>> TIGR03704  PrmC_rel_meth: putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.1   0.0   5.5e-32   1.4e-29      21     223 ..     152     361 ..     146     382 .. 0.86

  Alignments for each domain:
  == domain 1    score: 101.1 bits;  conditional E-value: 5.5e-32
    TIGR03704  21 vdaartaeelaalverrvaGlplehvlGwaefrGlriavdpgvfvprrrteflvdeavalakersarlvvvdlccGsGavgaalaaaldavelhaadidpaavrc....arrnladaGgr...vyeGdlyealptelrGrvdillanvpyvptdeiallppeardheprvaldGGadGldvlrrvaaeaadwlapGGallvetserqaae 223
                  v +a++a++l ++v rr a  p+++vlG  +f    ia++  ++ pr  te lv   v  ak+++++l + d+ cG+G +g++la+ +    ++a+d++p a++     ar  l+d G+     y   l  a   +     d++++n py+p  +i+ l  +    e   al GG+dG+dv+r +  + ++w        +e      + 
  MMETSP1061-20121228|40724_1 152 VLSAEQAQNLEEMVARREAHEPIQYVLGKWDFLYYTIAIRRPLLCPRPETEELVMMIVDEAKTTESPLRILDVGCGTGVIGISLAKLVPDSTVEAIDLEPVAIETslenAREVLNDGGTDrsgSYRATLCSANDYTPDRPFDVVVSNPPYIPRSDIDTLTDDVTRFESDQALCGGTDGMDVIRTIIEKLPSWCNNDAVCWMEVDPSHPTM 361
                  457999************************************************************************************************987222255555555542222355555555555566779***************************************************999888888876665555 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.8   0.0   2.9e-31   7.5e-29      32     261 ..     121     364 ..     107     371 .. 0.83

  Alignments for each domain:
  == domain 1    score: 98.8 bits;  conditional E-value: 2.9e-31
    TIGR03533  32 eaaaLvlealklpldl.......leelldarltkeekeellelierRveeriPvaYltneawfaglefyvdervlvPRspiaelieeefapllekeevkrvldlctGsGClaiaaaeafpeaevdavDisedaLevaeenieey...eledrveliqsdlfeal...egkkydlivsnPPYvdaeelaelpeEy.rhEPelalaagedGldlvrrilaeaaeyLeeeGvLvvEvGnskealeea 261
                   a++L + +l+lp+++         + l+++++++e+++ le +  R e + P+ Y++++  f  ++  +    l PR   +el+    ++  ++e++ r+ld+ +G+G ++i +a+  p+++v+a+D+   a+e + en +e    + +dr   +++ l +a    +++ +d++vsnPPY+ ++++++l+++  r E   al +g+dG+d++r+i+++ +++ +++ v  +Ev  s+ +++e+
  MMETSP1061-20121228|40724_1 121 SAMYLAAASLRLPWERgirdlqaGPNSLRSTVLSAEQAQNLEEMVARREAHEPIQYVLGKWDFLYYTIAIRRPLLCPRPETEELVMMIVDEAKTTESPLRILDVGCGTGVIGISLAKLVPDSTVEAIDLEPVAIETSLENAREVlndGGTDRSGSYRATLCSANdytPDRPFDVVVSNPPYIPRSDIDTLTDDVtRFESDQALCGGTDGMDVIRTIIEKLPSWCNNDAVCWMEVDPSHPTMIEE 364
                  577778888888876422211113456677788888877777777778999****************************************999******************************************99997765111445565555555554432226899********************997357*************************************9999888876 PP

>> TIGR00537  hemK_rel_arch: putative methylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.8   0.0   1.5e-13   3.9e-11      13     132 ..     211     346 ..     200     358 .. 0.74

  Alignments for each domain:
  == domain 1    score: 40.8 bits;  conditional E-value: 1.5e-13
    TIGR00537  13 knlrelknddvleiGaGtGlvairlkekgk..kivatdinPfavkllkenak..lnnveld...vlesdlfen..veg..kfdvilfnpPylelee.dekrgdyl....dlaidGGkdGrkvidrfldelpeilke 132
                  ++ +   + ++l++G GtG++ i l++     ++ a+d++P+a+ +  ena+  ln+ + d     ++ l  +   +    fdv++ npPy++ ++ d  ++d+     d a+ GG dG  vi   +++lp + ++
  MMETSP1061-20121228|40724_1 211 EAKTTESPLRILDVGCGTGVIGISLAKLVPdsTVEAIDLEPVAIETSLENARevLNDGGTDrsgSYRATLCSAndYTPdrPFDVVVSNPPYIPRSDiDTLTDDVTrfesDQALCGGTDGMDVIRTIIEKLPSWCNN 346
                  3444455678***************9986546899**************99544898777622223444443211222248************999566678876333367999****************998765 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.1   0.0   9.3e-11   2.4e-08      14      66 ..     211     264 ..     200     296 .. 0.85
   2 ?   -2.7   0.0       5.5   1.4e+03      86     105 ..     316     333 ..     293     343 .. 0.60

  Alignments for each domain:
  == domain 1    score: 32.1 bits;  conditional E-value: 9.3e-11
    TIGR02469  14 kLrlkkgd.vllDiGaGtGsvtieaarlvpkgrvyaierneealelieeNlrrf 66 
                  + +  +   ++lD+G+GtG ++i++a+lvp   v ai+ ++ a+e+  eN+r+ 
  MMETSP1061-20121228|40724_1 211 EAKTTESPlRILDVGCGTGVIGISLAKLVPDSTVEAIDLEPVAIETSLENAREV 264
                  5555544469****************************************9986 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 5.5
    TIGR02469  86 leeadavfvgGsgkklkeil 105
                    e d+++ gG +++  +++
  MMETSP1061-20121228|40724_1 316 RFESDQALCGGTDGM--DVI 333
                  446788888887776..333 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.2   0.0   6.2e-11   1.6e-08     161     232 ..     219     298 ..     199     318 .. 0.73

  Alignments for each domain:
  == domain 1    score: 32.2 bits;  conditional E-value: 6.2e-11
    TIGR00406 161 kkviDvGcGSGiLsiaalklga.akvvavDiDplavesarkNle..lN.qvsdllqvklen....leqkiegkaDvivaN 232
                   +++DvGcG G+++i+++kl   + v a+D++p+a+e +++N++  lN + +d+   +  +    ++ + + ++Dv+v+N
  MMETSP1061-20121228|40724_1 219 LRILDVGCGTGVIGISLAKLVPdSTVEAIDLEPVAIETSLENARevLNdGGTDRSGSYRATlcsaNDYTPDRPFDVVVSN 298
                  579*************99997615688***************97334413445554444445544555667788888877 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   3.3e-09   8.5e-07      49     121 ..     217     296 ..     200     299 .. 0.69

  Alignments for each domain:
  == domain 1    score: 26.3 bits;  conditional E-value: 3.3e-09
    TIGR01983  49 eglkvlDvGcGgGllseslarlgae..vtgiDlseelievAklhakkdplk.....kieyelksveelaeeekesfDvvl 121
                  + l++lDvGcG G++  sla+l  +  v++iDl   +ie+  + a++         + +y+++       + ++ fDvv+
  MMETSP1061-20121228|40724_1 217 SPLRILDVGCGTGVIGISLAKLVPDstVEAIDLEPVAIETSLENAREVLNDggtdrSGSYRATLCSANDYTPDRPFDVVV 296
                  4689*****************976556*****987777665444443222233346677777665555555567899987 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.6   0.0   3.3e-08   8.3e-06      22     104 ..     203     298 ..     198     299 .. 0.73

  Alignments for each domain:
  == domain 1    score: 23.6 bits;  conditional E-value: 3.3e-08
    TIGR02072  22 kLlellkekr..kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls............nvqficgdieklplekksfDlivSn 104
                  +L+ ++ +    +  p ++Ld+GcGtG++   l+k +p++++ a+D+ +  +e+  ++ +            +      +++     ++ fD++vSn
  MMETSP1061-20121228|40724_1 203 ELVMMIVDEAktTESPLRILDVGCGTGVIGISLAKLVPDSTVEAIDLEPVAIETSLENARevlndggtdrsgSYRATLCSANDYT-PDRPFDVVVSN 298
                  67777776665677789******************************99998888877776666777776553333333333333.34557777777 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.3   0.0   5.9e-08   1.5e-05      44      98 ..     205     263 ..     188     297 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.3 bits;  conditional E-value: 5.9e-08
    TIGR02021  44 llewlpkd..slkGkkvlDAGCGtGllsielAkr..GaivkavDiseklvelarkraek 98 
                  ++ ++ +   + +  ++lD GCGtG++ i+lAk      v+a+D+ +  +e++ ++a++
  MMETSP1061-20121228|40724_1 205 VMMIVDEAktTESPLRILDVGCGTGVIGISLAKLvpDSTVEAIDLEPVAIETSLENARE 263
                  444444433245678*****************9633689******99999887666654 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.0   5.2e-06    0.0013      37      81 ..     215     260 ..     202     271 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 5.2e-06
    TIGR01934  37 eekeekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkk 81 
                  +e++ ++lDv +GtG + i+lak ++   v ++Dl +  +e++ + 
  MMETSP1061-20121228|40724_1 215 TESPLRILDVGCGTGVIGISLAKLVPdSTVEAIDLEPVAIETSLEN 260
                  337899********************99999999987766665555 PP

>> TIGR00755  ksgA: dimethyladenosine transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   8.1e-05     0.021      15     104 ..     202     301 ..     200     308 .. 0.62

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 8.1e-05
    TIGR00755  15 esvlqkiveaaevee.sdvvlEiGpGlGaLTeellekakkvvaiEiDkrlaekLrkkleleekleviegDalkldle.......efakke......kvvsNlPY 104
                  e+++  iv++a+ +e + ++l +G+G+G +  +l++  +  ++  iD + +++ ++  + +e l+   +D      +       +    +      +vvsN PY
  MMETSP1061-20121228|40724_1 202 EELVMMIVDEAKTTEsPLRILDVGCGTGVIGISLAKLVPDSTVEAIDLEPVAIETSLENAREVLNDGGTDRSGSYRAtlcsandY----TpdrpfdVVVSNPPY 301
                  5677889999998875789*****************9988555555555444444444433444444444333322233343322....112245577777777 PP

>> TIGR00477  tehB: tellurite resistance protein TehB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00014     0.036      65     113 ..     209     259 ..     200     298 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00014
    TIGR00477  65 vleavkvvapcktldlGcGqGrnslylslaGyd..vdavdkneasiasvee 113
                  v ea  + +p ++ld+GcG G   + l+ +  d  v+a+d ++ +i +  e
  MMETSP1061-20121228|40724_1 209 VDEAKTTESPLRILDVGCGTGVIGISLAKLVPDstVEAIDLEPVAIETSLE 259
                  456666779*************99999987665448999999999965443 PP

>> TIGR00091  TIGR00091: tRNA (guanine-N(7)-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00023     0.059      20      61 ..     221     262 ..     209     265 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00023
    TIGR00091  20 vleiGcGkGrfliklAkqnpeknflGiEiekpivlkainkae 61 
                  +l++GcG G   i lAk  p+ ++  i +e+  + + +++a 
  MMETSP1061-20121228|40724_1 221 ILDVGCGTGVIGISLAKLVPDSTVEAIDLEPVAIETSLENAR 262
                  79**********************999999999999888775 PP

>> TIGR02716  C20_methyl_CrtF: C-20 methyltransferase BchU
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00024     0.062     138     194 ..     205     263 ..     194     275 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00024
    TIGR02716 138 ielllkeaklddv.kklidvgggigdiaaallkafpeldvtllnl.psaldlvrenvae 194
                  + ++++eak  +   +++dvg g g i  +l k  p+  v  ++l p a++   en+ e
  MMETSP1061-20121228|40724_1 205 VMMIVDEAKTTESpLRILDVGCGTGVIGISLAKLVPDSTVEAIDLePVAIETSLENARE 263
                  567888998876525899*************************99899**999999764 PP

>> TIGR02987  met_A_Alw26: type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0   0.00036     0.092      14     122 ..     202     301 ..     199     322 .. 0.74

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00036
    TIGR02987  14 kelvkelveeidkndkeeklkiidPcvGdGrliaallkkleeiklkkevelnieladideklLerakkllselaaleisiklknslsdvlllieeyaek..fdivitNPPy 122
                  +elv  +v+e ++++    l+i+d  +G+G++ ++l k ++           +e +d++  ++e   ++  e+  ++   +   s  ++l  +++y     fd+v+ NPPy
  MMETSP1061-20121228|40724_1 202 EELVMMIVDEAKTTES--PLRILDVGCGTGVIGISLAKLVPD--------STVEAIDLEPVAIETSLENAREVL-NDGGTDRSGSYRATLCSANDYTPDrpFDVVVSNPPY 301
                  6778888888874444..799999999999865555555533........347778888888887777777776.67778888888888888888876667********** PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (410 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                        16  (0.00390054); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              16  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1639.86
//
Query:       MMETSP1061-20121228|40725_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       235  (0.0572891); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 2843.27
//
Query:       MMETSP1061-20121228|40754_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    9.8   5.5       0.17    9.6   2.7    2.0  2  TIGR03068 srtB_sig_NPQTN: sortase B signal domain, NPQTN class


Domain annotation for each model (and alignments):
>> TIGR03068  srtB_sig_NPQTN: sortase B signal domain, NPQTN class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0      0.16   6.6e+02       6      11 ..       5      10 ..       3      13 .. 0.78
   2 ?    9.6   2.7   4.1e-05      0.17       4      18 ..      47      61 ..      44      65 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 0.16
    TIGR03068  6 AGTPAY 11
                 AGT A+
  MMETSP1061-20121228|40754_1  5 AGTEAF 10
                 888886 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 4.1e-05
    TIGR03068  4 TNAGTPAYIYaIPVA 18
                   AGTPA I aIP A
  MMETSP1061-20121228|40754_1 47 AVAGTPAAIAAIPAA 61
                 569**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 499.26
//
Query:       MMETSP1061-20121228|40757_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 422.37
//
Query:       MMETSP1061-20121228|40766_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 633.55
//
Query:       MMETSP1061-20121228|40773_1  [L=1320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.55u 0.16s 00:00:00.71 Elapsed: 00:00:00.45
# Mc/sec: 3871.68
//
Query:       MMETSP1061-20121228|40789_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.17
# Mc/sec: 419.26
//
Query:       MMETSP1061-20121228|40799_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 309.89
//
Query:       MMETSP1061-20121228|40806_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.23
# Mc/sec: 464.83
//
Query:       MMETSP1061-20121228|40802_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1935.84
//
Query:       MMETSP1061-20121228|40810_1  [L=156]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (156 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1029.51
//
Query:       MMETSP1061-20121228|40852_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|40859_1  [L=225]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-40  134.2   0.0    9.1e-40  133.8   0.0    1.1  1  TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase
     0.0034   15.2   0.0     0.0045   14.7   0.0    1.3  1  TIGR01506 ribC_arch: riboflavin synthase


Domain annotation for each model (and alignments):
>> TIGR00114  lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.8   0.0   4.4e-43   9.1e-40       1     136 [.      52     186 ..      52     188 .. 0.98

  Alignments for each domain:
  == domain 1    score: 133.8 bits;  conditional E-value: 4.4e-43
    TIGR00114   1 vrvaivvarfNrvitdkllkgakdalkrlgaevdnievilvpGafelPlavkkllekeklDavialGavirGeTeHfeyvadeaakglaklaldtdvPvifGiltteteeqaieragtkagnkgveaavkalemlk 136
                  +r++i+ +r+N++ + +l++g+k alk   ++++ni  + +pGa+elPl ++ l+ ++++Da+++ G++i+GeT+Hfey++d +++gl++++l+t+ Pv++G+l +++e+q  +r+  ++ n+g +++ +a+em+ 
  MMETSP1061-20121228|40859_1  52 IRIGIIRTRWNDEHVTNLVEGCKKALKECNVKEENIFETSIPGAYELPLSARFLALSGTVDAIVTAGVLIKGETMHFEYISDAVSSGLMSVQLQTSCPVVYGVLNCMNEDQVKARSTGDN-NHGYDWGKTAVEMAL 186
                  69*************************************************************************************************************999999999.*************85 PP

>> TIGR01506  ribC_arch: riboflavin synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   2.2e-06    0.0045      26     104 ..      82     162 ..      53     202 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 2.2e-06
    TIGR01506  26 lagikivrrtvpGikdlpvaakklleekGceivitlGlvGreekdklsyl..aasvGlilvqlltnkhvidvtvhedeaed 104
                  +   +i   ++pG  +lp +a+ l      + ++t G+  + e  +  y+  a+s Gl+ vql t+  v+  ++   ++++
  MMETSP1061-20121228|40859_1  82 VKEENIFETSIPGAYELPLSARFLALSGTVDAIVTAGVLIKGETMHFEYIsdAVSSGLMSVQLQTSCPVVYGVLNCMNEDQ 162
                  4455678889***********999887889*******9877777777666336899*********9988765554444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (225 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1349.89
//
Query:       MMETSP1061-20121228|40857_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2934.22
//
Query:       MMETSP1061-20121228|40870_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   13.8   0.1      0.076   11.1   0.0    2.3  2  TIGR01446 DnaD_dom: DnaD domain protein


Domain annotation for each model (and alignments):
>> TIGR01446  DnaD_dom: DnaD domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.0   0.0     0.052   2.1e+02      22      40 ..       3      21 ..       1      32 [. 0.74
   2 ?   11.1   0.0   1.9e-05     0.076       8      40 ..      35      66 ..      28      92 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.0 bits;  conditional E-value: 0.052
    TIGR01446 22 kkwlddfgnslelikeAlk 40
                 +++ d  +n+ e+++ A++
  MMETSP1061-20121228|40870_1  3 EYASDALKNNKEIVLTAVT 21
                 5666666778889988876 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 1.9e-05
    TIGR01446  8 nfgrtlspfemedlkkwlddfgnslelikeAlk 40
                  fg   +p++  +l+++ dd +n+ e++++A++
  MMETSP1061-20121228|40870_1 35 SFG-WRKPMNGNNLQYASDDMKNNHEVVLAAVT 66
                 567.778999********************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 590.81
//
Query:       MMETSP1061-20121228|40887_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 322.05
//
Query:       MMETSP1061-20121228|40893_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|40911_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.3e-05   19.8   0.5    7.3e-05   19.8   0.3    1.0  1  TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
     0.0043   14.0   0.2     0.0043   14.0   0.1    1.0  1  TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364
  ------ inclusion threshold ------
      0.022   11.1   0.8      0.022   11.1   0.5    1.0  1  TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit


Domain annotation for each model (and alignments):
>> TIGR03197  MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.3   5.3e-08   7.3e-05       7      58 ..       1      52 [.       1      56 [] 0.91

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 5.3e-08
    TIGR03197  7 aGiAgaalalsLarrGvqvtllekdeklaqgASgnrqGalypllsaddnals 58
                 +G+ g+a+  + + +G++  l+e++++l ++ASg ++G++ + ++a+   l+
  MMETSP1061-20121228|40911_1  1 GGVVGLACLRAATLKGWKCALVEAETDLLTQASGGNSGIVCTGVDASVGTLE 52
                 89**************************************998888776665 PP

>> TIGR03364  HpnW_proposed: FAD dependent oxidoreductase TIGR03364
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   3.2e-06    0.0043       8      48 ..       1      42 [.       1      55 [. 0.83

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.2e-06
    TIGR03364  8 aGivGlahAlaaarrGlkVtvierssr.aaGAsvrNFGqvvv 48
                 +G+vGla   aa+ +G+k +++e +    + As  N G v+ 
  MMETSP1061-20121228|40911_1  1 GGVVGLACLRAATLKGWKCALVEAETDlLTQASGGNSGIVCT 42
                 6**********************9876257899999999985 PP

>> TIGR03377  glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.5   1.6e-05     0.022       7      49 ..       1      44 [.       1      54 [. 0.88

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.6e-05
    TIGR03377  7 GGatGaGilRDlalRglkvvLlek.kdlasGttgRnhGLLhsGa 49
                 GG  G   lR  +l+g k+ L+e  +dl + ++g n G++  G 
  MMETSP1061-20121228|40911_1  1 GGVVGLACLRAATLKGWKCALVEAeTDLLTQASGGNSGIVCTGV 44
                 8999*******************626************998885 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 321.36
//
Query:       MMETSP1061-20121228|40925_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-29   99.7   0.2    4.7e-29   99.7   0.1    1.0  1  TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
    2.9e-05   20.5   0.1    2.9e-05   20.5   0.1    1.0  1  TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type
     0.0045   13.3   0.1     0.0046   13.3   0.0    1.0  1  TIGR02418 acolac_catab: acetolactate synthase, catabolic
  ------ inclusion threshold ------
      0.011   12.0   0.0      0.011   11.9   0.0    1.0  1  TIGR02720 pyruv_oxi_spxB: pyruvate oxidase
      0.028   10.6   0.0      0.028   10.6   0.0    1.0  1  TIGR03457 sulphoacet_xsc: sulfoacetaldehyde acetyltransferase


Domain annotation for each model (and alignments):
>> TIGR00173  menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.7   0.1   5.7e-32   4.7e-29      62     119 ..       4      61 .]       1      61 [] 0.97

  Alignments for each domain:
  == domain 1    score: 99.7 bits;  conditional E-value: 5.7e-32
    TIGR00173  62 grPvalvcTSGTAvanllPAvvEAklsrvpLivLtADRPpeLrgcganQtidQeklfg 119
                  grP+a+v++SGTAvanl+PA++EA ++ vpL+vLtADRP e r++ganQ+idQ k+++
  MMETSP1061-20121228|40925_1   4 GRPAAVVTSSGTAVANLYPAIIEAGMDAVPLLVLTADRPYESRDTGANQAIDQVKVYS 61 
                  79*****************************************************995 PP

>> TIGR00118  acolac_lg: acetolactate synthase, large subunit, biosynthetic type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   0.1   3.5e-08   2.9e-05      59     115 ..       1      57 [.       1      61 [] 0.92

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 3.5e-08
    TIGR00118  59 rasGkvGvvlatsGPGatnlvtgiatayldsvPlvvltGqvatsliGsdafqeidil 115
                  r  G++  v++ sG   +nl  +i++a +d+vPl+vlt   + +   + a q id +
  MMETSP1061-20121228|40925_1   1 RGVGRPAAVVTSSGTAVANLYPAIIEAGMDAVPLLVLTADRPYESRDTGANQAIDQV 57 
                  6789************************************99999999999999977 PP

>> TIGR02418  acolac_catab: acetolactate synthase, catabolic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.7e-06    0.0046      59     116 ..       3      60 ..       1      61 [] 0.94

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.7e-06
    TIGR02418  59 tGkpGvalvtsGPGvsnlvtGlltansegdpvvaigGqvkradklklthqsldnvall 116
                   G+p  +++ sG  v+nl   ++ a  ++ p++ ++ +   + +   + q++d+v ++
  MMETSP1061-20121228|40925_1   3 VGRPAAVVTSSGTAVANLYPAIIEAGMDAVPLLVLTADRPYESRDTGANQAIDQVKVY 60 
                  699**********************************99999999999*****99876 PP

>> TIGR02720  pyruv_oxi_spxB: pyruvate oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   1.4e-05     0.011      66     118 ..       8      60 ..       3      61 .] 0.90

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 1.4e-05
    TIGR02720  66 vafGsaGPGavhllnGlydakedhvPvlalvgqvatkelnmdafqelneePiy 118
                   ++ s+G    +l   + +a +d vP+l l ++++ ++ +  a q++++  +y
  MMETSP1061-20121228|40925_1   8 AVVTSSGTAVANLYPAIIEAGMDAVPLLVLTADRPYESRDTGANQAIDQVKVY 60 
                  568899*99****************************9999999999988877 PP

>> TIGR03457  sulphoacet_xsc: sulfoacetaldehyde acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   3.5e-05     0.028      62     119 ..       3      60 ..       1      61 [] 0.94

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 3.5e-05
    TIGR03457  62 tGkasvviGqnGPGvtnlvtaiaaaywahtPlvivtPeagtktiGlgGfqeadqlalf 119
                   G+ + v+   G  v+nl  ai  a +   Pl+++t +   ++   g  q +dq+ ++
  MMETSP1061-20121228|40925_1   3 VGRPAAVVTSSGTAVANLYPAIIEAGMDAVPLLVLTADRPYESRDTGANQAIDQVKVY 60 
                  6899999***********************************************9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|40934_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1522.95
//
Query:       MMETSP1061-20121228|40954_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 666.54
//
Query:       MMETSP1061-20121228|40955_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 560.95
//
Query:       MMETSP1061-20121228|40963_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0076   11.8  12.6     0.0083   11.7   8.7    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.027    9.9  13.4       0.03    9.8   9.3    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
        1.7    6.6  12.1        2.7    6.0   0.6    2.2  2  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
        2.1    6.2  11.3        2.5    5.9   2.3    2.4  2  TIGR02209 ftsL_broad: cell division protein FtsL
        2.9    6.0  14.3        4.4    5.4   4.3    2.2  2  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   8.7     1e-05    0.0083     851     953 ..       6     106 ..       1     126 [. 0.36

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1e-05
    TIGR02168 851 eleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyel 953
                  elee++++  aeie l+++ ++l++e ++++ + asle++  +++++l++ls+ +    +k+++ +++l e+  +la+l ++ e+l+++ +elq++ +++++l
  MMETSP1061-20121228|40963_1   6 ELEETLAKRDAEIEALRKSNRALHKECNQHTTKIASLETQCVARSAKLAQLSDLIS--FRKNDKVQERLMEKSLELADLIEETERLRIQKNELQKEKTKNGKL 106
                  33333333333333333333333333333333333333333333333333333322..122233333333333333333333333333333333333333333 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.8   9.3   3.7e-05      0.03     713     814 ..       5     106 ..       1     127 [. 0.45

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 3.7e-05
    TIGR02169 713 sdaekkieeiekeleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseekieeieeelekleeevsriear 814
                  ++ e+ + ++ +e+e+l++++++l+++ ++  +k+ +le +  +  ++l++l+  i+ +++++ + +   ++le  +  e+ e+++ ++++l++e  ++ + 
  MMETSP1061-20121228|40963_1   5 RELEETLAKRDAEIEALRKSNRALHKECNQHTTKIASLETQCVARSAKLAQLSDLISFRKNDKVQERLMEKSLELADLIEETERLRIQKNELQKEKTKNGKL 106
                  334444444455555555555555555555555555555555555555555555444444444444444444444444444444444444444443333333 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.6    0.0033       2.7      91     126 ..      10      45 ..       3      55 .. 0.73
   2 ?    4.9   3.8    0.0071       5.9      75     129 ..      49     102 ..      45     123 .. 0.71

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0033
    TIGR02894  91 nlketleeaeklrkekeklkeeleslqkrneeLeke 126
                  +l++   e e+lrk +  l++e ++  +++++Le++
  MMETSP1061-20121228|40963_1  10 TLAKRDAEIEALRKSNRALHKECNQHTTKIASLETQ 45 
                  455666777788888888888888888888888775 PP

  == domain 2    score: 4.9 bits;  conditional E-value: 0.0071
    TIGR02894  75 raaesltledviefLqnlketleeaeklrkekeklkeeleslqkrneeLekelek 129
                  r+a+   l d i+f +n k  +e+  +   e   l ee+e l+ +++eL+ke+ k
  MMETSP1061-20121228|40963_1  49 RSAKLAQLSDLISFRKNDKV-QERLMEKSLELADLIEETERLRIQKNELQKEKTK 102
                  55566678888888888776.4566666777888888888888888888887765 PP

>> TIGR02209  ftsL_broad: cell division protein FtsL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.3   0.7    0.0049         4      26      57 ..       4      35 ..       1      54 [. 0.89
   2 ?    5.9   2.3    0.0031       2.5      30      58 ..      76     104 ..      67     106 .. 0.85

  Alignments for each domain:
  == domain 1    score: 5.3 bits;  conditional E-value: 0.0049
    TIGR02209 26 trqlnselqklqaeieklqkewndLqlEvael 57
                 +r+l   l+k +aeie+l k ++ L  E ++ 
  MMETSP1061-20121228|40963_1  4 ARELEETLAKRDAEIEALRKSNRALHKECNQH 35
                 688899999*****************998765 PP

  == domain 2    score: 5.9 bits;  conditional E-value: 0.0031
    TIGR02209  30 nselqklqaeieklqkewndLqlEvaels 58 
                    el++l +e+e+l ++ n+Lq E+++++
  MMETSP1061-20121228|40963_1  76 SLELADLIEETERLRIQKNELQKEKTKNG 104
                  57999********************9987 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   2.5     0.012       9.9      36      87 ..       5      56 ..       1      61 [. 0.60
   2 ?    5.4   4.3    0.0054       4.4      25      89 ..      57     119 ..      36     125 .. 0.79

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.012
    TIGR03495 36 kaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrekrierL 87
                 ++ +++l+k+++ +eal +  ++ +++ +q   + a++e++   r  ++ +L
  MMETSP1061-20121228|40963_1  5 RELEETLAKRDAEIEALRKSNRALHKECNQHTTKIASLETQCVARSAKLAQL 56
                 4455566666666666666666666666666666666666666666665555 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0054
    TIGR03495  25 raslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrekrierLlr 89 
                  ++ ++    + ++ q+ l +k+  l  l +e++r + ++++L++++ ++ +ll +    i+ L +
  MMETSP1061-20121228|40963_1  57 SDLISFR--KNDKVQERLMEKSLELADLIEETERLRIQKNELQKEKTKNGKLLLEMSDIIRMLNH 119
                  4444333..45677889999*********************************999999988865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       384  (0.0936129); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.19u 0.17s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 582.57
//
Query:       MMETSP1061-20121228|40990_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.20
# Mc/sec: 824.93
//
Query:       MMETSP1061-20121228|41001_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 403.30
//
Query:       MMETSP1061-20121228|41034_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|41039_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.17s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 2757.11
//
Query:       MMETSP1061-20121228|41057_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-07   29.4   1.1      1e-07   29.4   0.7    2.1  2  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.6   0.2     0.026   1.1e+02       2      21 ..       7      25 ..       6      28 .. 0.73
   2 !   29.4   0.7   2.4e-11     1e-07       1      26 []      31      55 ..      31      55 .. 0.97

  Alignments for each domain:
  == domain 1    score: 0.6 bits;  conditional E-value: 0.026
    TIGR02167  2 FsgCssLtsLDlSnfdTsnV 21
                 F++ s +++  l+ ++ s+ 
  MMETSP1061-20121228|41057_1  7 FNSASRFNQ-TLDDWKLSSA 25
                 666677777.7889988875 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 2.4e-11
    TIGR02167  1 MFsgCssLtsLDlSnfdTsnVTnMss 26
                 MFs+ s +++ ++ ++ Ts+VT+M++
  MMETSP1061-20121228|41057_1 31 MFSNASEFNQ-PIGSWETSSVTDMTG 55
                 **********.*************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 371.97
//
Query:       MMETSP1061-20121228|41054_1  [L=794]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      9e-24   81.9   0.0    1.3e-21   74.8   0.0    2.2  2  TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
    1.1e-05   22.1   0.0     0.0012   15.4   0.0    3.1  3  TIGR01751 crot-CoA-red: crotonyl-CoA reductase
    0.00011   19.6   0.0    0.00018   18.8   0.0    1.2  1  TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein
    0.00023   18.3   0.1    0.00066   16.8   0.1    1.8  1  TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
     0.0016   15.3   0.1     0.0076   13.1   0.0    2.0  2  TIGR00692 tdh: L-threonine 3-dehydrogenase
     0.0026   14.7   0.1     0.0045   13.9   0.1    1.3  1  TIGR02822 adh_fam_2: zinc-binding alcohol dehydrogenase family protein


Domain annotation for each model (and alignments):
>> TIGR02824  quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   1.9e-24   1.3e-21      19     178 ..     400     575 ..     386     588 .. 0.89
   2 !    4.7   0.0    0.0039       2.7     272     317 ..     718     762 ..     713     767 .. 0.81

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 1.9e-24
    TIGR02824  19 eaplpelkagevlikvaAaGvNrpDvlQraGkYp.pppgaseilGLEvaGevvavgeevsk.......fkvGdrvcaLvagGgyaeyvvveakqvlpvpeglslveaAalpEtffTvwsnlf..elaklka......getvLihggasGiGttaiqlakalgakvlvtagsdekle 178
                    p+p+ k+gevl++v+A+ v  +D++ r+G++  +p +   ++G  + G+vv+   +  +        ++Gd v++L  +G+ + ++ v+++++++vp +l+ ++   l+Et++T++++l   ++++++       g+++Li gg s  G + i l++a+ga ++ +  sd+ ++
  MMETSP1061-20121228|41054_1 400 AMPVPNRKKGEVLVRVHASTVSASDCAIRRGEWSkVPMDPYIVPGTALVGRVVESEPKKLRtsfssstIEAGDVVLSLSVSGANTRFTCVSKTNLIKVPPHLNPEQVVCLAETYLTAFQSLHlgQKGGIRYredslkGKSILIMGGYSPFGRAIIELCRAAGAACCYALTSDDSIS 575
                  5789999*************************97367888889***********9987766677778899************************************************9864338999986667777******************************999999765 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.0039
    TIGR02824 272 KaaiaaeleekvwpllaegkvrpvidkvfpledaakAhellesseh 317
                  Ka  +++l e++  ll+ + + p i++ fpl+++akA ++le+++ 
  MMETSP1061-20121228|41054_1 718 KAMARKDL-EHLVQLLEIELLDPEIARRFPLSKIAKAQHCLERKTI 762
                  44444444.56778999999*********************99865 PP

>> TIGR01751  crot-CoA-red: crotonyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.5   0.0     0.029        20       8      50 ..     376     421 ..     368     426 .. 0.81
   2 !   15.4   0.0   1.8e-06    0.0012     140     233 ..     481     581 ..     477     673 .. 0.72
   3 ?    0.5   0.0     0.061        41     340     387 ..     723     770 ..     715     773 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.5 bits;  conditional E-value: 0.029
    TIGR01751   8 meafairkerdkdprkalrv...eqvpvpelgpdevLvavmaagvn 50 
                   ++++  +e  +d rk +++     +pvp+  ++evLv v a++v 
  MMETSP1061-20121228|41054_1 376 HNMYVAYSEFSQDARKVIKLcghRAMPVPNRKKGEVLVRVHASTVS 421
                  56888888889999999987443689*****************985 PP

  == domain 2    score: 15.4 bits;  conditional E-value: 1.8e-06
    TIGR01751 140 GslaefalvedsqllPkPkhLtWeeaacllLtaatayrqLv.gkkp.aelk....pGdavLiWGaaGGLGsyaiqlaraaGgipv.avvssedkaeiarel 233
                  G+  +f+ v+++ l+  P+hL  e+  cl  t  ta++ L  g+k+  + +    +G+++Li G+   +G   i l raaG+    a  s++  +e  r l
  MMETSP1061-20121228|41054_1 481 GANTRFTCVSKTNLIKVPPHLNPEQVVCLAETYLTAFQSLHlGQKGgIRYRedslKGKSILIMGGYSPFGRAIIELCRAAGAACCyALTSDDSISENGRGL 581
                  67789*********************************996244432233333337*************************98762555555555555554 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.061
    TIGR01751 340 reasevnrlvakgrvdPtLskvysleeigkaaqkllanelqGkvavLv 387
                  ++ +++++l++   +dP +++ ++l +i+ka++ l++++  G+   ++
  MMETSP1061-20121228|41054_1 723 KDLEHLVQLLEIELLDPEIARRFPLSKIAKAQHCLERKTIPGDGHLIC 770
                  455667889999999********************9999999866555 PP

>> TIGR02817  adh_fam_1: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   2.7e-07   0.00018      22     175 ..     401     563 ..     385     578 .. 0.81

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 2.7e-07
    TIGR02817  22 lakPkpkgrdllvevkavsvnPvdtkvrkkvapea..eelkilGwdaaGvvkavGeevtlfkvGdevfyaGa....lerpGsnaefhlvderivgkkPkslsfaeaaalPltaitawellf..drlkie.edvagekralliiGaaGGvgsiliqlarqltel 175
                  +++P+ k+ ++lv v+a +v   d  +r+   ++   + + + G   +G v++  ++            aG+    l+ +G+n+ f  v +    k P  l+ ++   l  t +ta++ l    + +i+ ++ + + +++li+G+    g  +i l r+   +
  MMETSP1061-20121228|41054_1 401 MPVPNRKKGEVLVRVHASTVSASDCAIRRGEWSKVpmDPYIVPGTALVGRVVESEPKKLRTSFSSSTIEAGDvvlsLSVSGANTRFTCVSKTNLIKVPPHLNPEQVVCLAETYLTAFQSLHlgQKGGIRyREDSLKGKSILIMGGYSPFGRAIIELCRAAGAA 563
                  789999**********************9977664326667779999998888777765555566666677522226889*************************************9876335666762455678999*****************9987665 PP

>> TIGR03366  HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.1   9.6e-07   0.00066       2      76 ..     405     482 ..     404     494 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 9.6e-07
    TIGR03366   2 alaeGevlvrvllatvCGsdlhtvaGrreg..klp.svlGheavGevvalgsee.aaavdgeklavGqRvvwsvavsCg 76 
                  + ++Gevlvrv+++tv  sd    +G  ++   +p  v G   vG+vv++++++ +++   ++++ G+ vv s++vs  
  MMETSP1061-20121228|41054_1 405 NRKKGEVLVRVHASTVSASDCAIRRGEWSKvpMDPyIVPGTALVGRVVESEPKKlRTSFSSSTIEAGD-VVLSLSVSGA 482
                  6689*****************9999986652234524669************9988999999999998.6777776643 PP

>> TIGR00692  tdh: L-threonine 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.1e-05    0.0076      16      70 ..     401     454 ..     387     474 .. 0.90
   2 ?   -1.5   0.0      0.31   2.1e+02     157     187 ..     532     563 ..     461     573 .. 0.59

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.1e-05
    TIGR00692  16 vpvpelgknevlikvkatsicGtdvhiynwdewaqkrikvpqvlGhevaGevvgi 70 
                  +pvp+  k+evl++v+a+++  +d  i    ew++  + +  v G  ++G vv+ 
  MMETSP1061-20121228|41054_1 401 MPVPNRKKGEVLVRVHASTVSASDCAIRR-GEWSKVPMDPYIVPGTALVGRVVES 454
                  79************************975.79******999999********985 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.31
    TIGR00692 157 esdlaGesvlvsG.aGpiGllavavakaaGas 187
                  e +l G+s+l++G   p G   + + +aaGa 
  MMETSP1061-20121228|41054_1 532 EDSLKGKSILIMGgYSPFGRAIIELCRAAGAA 563
                  34567888888752578888888888888876 PP

>> TIGR02822  adh_fam_2: zinc-binding alcohol dehydrogenase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   6.6e-06    0.0045      20      72 ..     401     455 ..     394     483 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 6.6e-06
    TIGR02822  20 eevprpgegellvrvracgvcrtdlhvsegdlpv..hrervipghevvgevveag 72 
                   +vp   +ge+lvrv+a  v  +d  +  g+ +     + ++pg  +vg vve+ 
  MMETSP1061-20121228|41054_1 401 MPVPNRKKGEVLVRVHASTVSASDCAIRRGEWSKvpMDPYIVPGTALVGRVVESE 455
                  46888889**********************98751246789***********976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (794 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       165  (0.0402243); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.39
# Mc/sec: 2687.16
//
Query:       MMETSP1061-20121228|41079_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 599.95
//
Query:       MMETSP1061-20121228|41093_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.2   0.3      0.028   11.2   0.2    1.0  1  TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit


Domain annotation for each model (and alignments):
>> TIGR00390  hslU: ATP-dependent protease HslVU, ATPase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.2   6.8e-06     0.028     176     226 ..       3      53 ..       1      78 [. 0.72

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 6.8e-06
    TIGR00390 176 ekspseieilappeleevdenlqsllqnllsdkkkkrklkvkeakkvliee 226
                  ++ +  +++ ++   +++++++q++l+n l++  +k+ l ++++ ++ + +
  MMETSP1061-20121228|41093_1   3 AAASKAVKVKKAHRGQQMQQQMQQALENHLPKTVRKKSLALRQTVNARVID 53 
                  5556778888888899**************************987764433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       334  (0.0814237); expected 82.0 (0.02)
Passed bias filter:                      260  (0.0633837); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.18s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|41099_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:01.17
# Mc/sec: 91.38
//
Query:       MMETSP1061-20121228|41110_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 1316.42
//
Query:       MMETSP1061-20121228|41121_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         9  (0.00219405); expected 82.0 (0.02)
Passed bias filter:                        9  (0.00219405); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 274.54
//
Query:       MMETSP1061-20121228|41122_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-06   26.2   0.0    1.2e-06   26.1   0.0    1.1  1  TIGR00633 xth: exodeoxyribonuclease III (xth)
    5.5e-06   24.0   0.1    1.1e-05   23.1   0.0    1.4  1  TIGR00195 exoDNase_III: exodeoxyribonuclease III


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.1   0.0   5.9e-10   1.2e-06     125     165 ..       2      43 ..       1      64 [. 0.82

  Alignments for each domain:
  == domain 1    score: 26.1 bits;  conditional E-value: 5.9e-10
    TIGR00633 125 efweallaklekeldk.ekpvvlcGDlNvaheeiDlanpken 165
                  +f++al++++ +++++ +k+v+l+GDlN++h+e D+  ++ +
  MMETSP1061-20121228|41122_1   2 KFLNALRQAMRNQRENrKKEVILVGDLNISHTEKDIFWGSRK 43 
                  5788899999888876599*****************887654 PP

>> TIGR00195  exoDNase_III: exodeoxyribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   5.2e-09   1.1e-05     122     159 ..       2      40 ..       1      50 [. 0.83

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 5.2e-09
    TIGR00195 122 qfleelqkyleklekkdkp.vlicGDlniapeeiDlksp 159
                  +fl++l++ +++++++ k+ v+++GDlni+++e D+  +
  MMETSP1061-20121228|41122_1   2 KFLNALRQAMRNQRENRKKeVILVGDLNISHTEKDIFWG 40 
                  79999999998776665545***************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 629.95
//
Query:       MMETSP1061-20121228|41129_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|41137_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|41152_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|41146_1  [L=456]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-53  179.2   0.0    4.2e-53  178.7   0.0    1.2  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    1.4e-11   42.4   0.0    5.5e-08   30.6   0.0    2.4  2  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    4.1e-09   33.9   0.0    3.2e-08   31.0   0.0    2.0  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.1e-08   32.8   0.0    5.5e-06   23.9   0.0    2.2  2  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    1.4e-07   28.1   0.0    6.6e-07   25.9   0.0    1.8  2  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.6e-07   28.8   0.0    1.3e-06   25.8   0.0    2.0  2  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    2.9e-07   28.2   0.0     0.0031   15.0   0.0    2.2  2  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.1e-06   26.2   0.0    0.00023   18.5   0.0    2.2  2  TIGR02415 23BDH: acetoin reductases
     0.0001   19.7   0.0    0.00028   18.3   0.0    1.7  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    0.00013   19.3   0.0    0.00025   18.4   0.0    1.5  1  TIGR01500 sepiapter_red: sepiapterin reductase


Domain annotation for each model (and alignments):
>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  178.7   0.0     1e-55   4.2e-53       4     315 .]     131     455 ..     129     455 .. 0.83

  Alignments for each domain:
  == domain 1    score: 178.7 bits;  conditional E-value: 1e-55
    TIGR01289   4 ptviitgassglglaaakalvekg.kwhvvmacrdlekaekaaksl..glpkdsytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvtanskelagkvpikadlgdlsgleaglkaaniamidgkefkaakaykdsklcnmltvrelhrryh..det.givfaslypgcvadtglfrehlplfrtlfppfqkyitkgyvseeeagkrlaqvvadp....klkk.....sgvywswgkrq.esfeqe.....lseevsddekakklwelseklvgla 315
                  +tv+itg  sg+gl+aa+ l+ +    ++++acr   ka+ +a+++    p+ +    + dlasl+sv+kf +++   + +ld++  na + l +  e  ++adg+e +++tnhlghf l +ll   l++ +    + +i  s   + +  +gk  i+a lgdl+g++   k+    m+dg+++++ kaykdsklcn+l  rel r+    d+t  +v +++ pg ++ +g+fr + p+f  +f      + k   + e  g  la + + +    ++ +     s  y s g++  ++f +e     +s+e+ d++kak+lw lseklvg++
  MMETSP1061-20121228|41146_1 131 KTVLITGCNSGIGLEAARILARRNpSDKLILACRTQAKADGTAQKIleETPAANLVPAECDLASLNSVKKFAASL---DGKLDVVCYNAGLALNTQGEIERTADGFERTIGTNHLGHFYLHHLLEPKLNTGN---GKAVITASSVHDPESPGGKQGIPATLGDLDGFARDGKN--FEMVDGNPYNGDKAYKDSKLCNILFCRELQRKLAadDATkNVVVNAFSPGLITSSGFFRYQNPVFASVFNVAVSSVFKVAETPEYGGAALAYMTTVEntrgEFFDsppgtSNKYASDGNDYqGAFGKEfaptaVSKEALDNQKAKRLWTLSEKLVGIS 455
                  69*******************98725689***************983346777777789************9875...678******************************************999888654...3456666667789999****************986655..57*****************************9852245536999***************************9999999999999999999976543311124544121114566776666466665543333389*********************85 PP

>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.6   0.0   1.3e-10   5.5e-08       1     137 [.     133     270 ..     133     294 .. 0.77
   2 !    9.2   0.0   0.00047      0.19     158     183 ..     326     351 ..     301     354 .. 0.76

  Alignments for each domain:
  == domain 1    score: 30.6 bits;  conditional E-value: 1.3e-10
    TIGR01830   1 alvtGasrgiGkaiakklake..gakvviterskeekaeelaeelkeag..vkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDkl.llrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvv 137
                  +l+tG + giG + a+ la++  + k+++  r++++ a+ +a+++ e+   ++ + +++d+++ ++vk++ ++     g++d++  nAG++ ++   ++ + + +++ i +n  g f + +    k+      ++i+ ssv 
  MMETSP1061-20121228|41146_1 133 VLITGCNSGIGLEAARILARRnpSDKLILACRTQAK-ADGTAQKILEETpaANLVPAECDLASLNSVKKFAAS---LDGKLDVVCYNAGLALNTQgEIERTADGFERTIGTNHLGHFYLHHLLEPKLNTGNGKAVITASSVH 270
                  69****************987324677777666655.566666555543014556678999999888887665...5689**********976552799999*****************99999998888888899999996 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00047
    TIGR01830 158 ltkslakElasrnitvnavaPGfiet 183
                  l++ la + a++n+ vna +PG+i++
  MMETSP1061-20121228|41146_1 326 LQRKLAADDATKNVVVNAFSPGLITS 351
                  56778888899*************87 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.0   0.0   7.8e-11   3.2e-08       2     143 ..     131     274 ..     130     294 .. 0.77
   2 ?    0.6   0.0      0.15        60     160     184 ..     326     350 ..     311     375 .. 0.86

  Alignments for each domain:
  == domain 1    score: 31.0 bits;  conditional E-value: 7.8e-11
    TIGR01963   2 kvalvtGaasGiglaiakelaaaG..akvvvndleeeaaeaaakeleea..ggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapie.efptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhglva 143
                  k++l+tG +sGigl+ a+ la+     k+++   ++++a+ +a+++ e+  +++ +  + d+++ ++++   + +a+  g+ld++  nAG+   ++ e e   + fe+ i  n  + f + +   p+++  +   +i  +svh  ++
  MMETSP1061-20121228|41146_1 131 KTVLITGCNSGIGLEAARILARRNpsDKLILACRTQAKADGTAQKILEEtpAANLVPAECDLASLNSVK---KFAASLDGKLDVVCYNAGLALNTQGEiERTADGFERTIGTNHLGHFYLHHLLEPKLNTGNGKAVITASSVHDPES 274
                  9********************975225788888888888888887766611456667777888888777...56667779**********988776554567899********99*9999888888877665558899999997665 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.15
    TIGR01963 160 ltKvlAlEvAetgitanaicPgyvr 184
                  l + lA + A++++ +na  Pg ++
  MMETSP1061-20121228|41146_1 326 LQRKLAADDATKNVVVNAFSPGLIT 350
                  566789999************9875 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.0   1.3e-08   5.5e-06       5     139 ..     130     267 ..     128     273 .. 0.74
   2 !    6.5   0.0    0.0027       1.1     163     187 ..     326     350 ..     311     355 .. 0.89

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 1.3e-08
    TIGR01832   5 GkvalvtGantGlGqgiavglaeaGa.d..iv.gvgiselsetqekvealGrkf..lslkadladeeaakalvdeaveeagkidilvnnaGi.irredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiinia 139
                  Gk++l+tG+n+G+G   a  la+    d  i+ + ++++++ t++k+ ++   +     + dla+ +++k   + a+   gk+d++  naG+ ++ +  +e +   ++  + +n    f+l + +    l++G+   +i  +
  MMETSP1061-20121228|41146_1 130 GKTVLITGCNSGIGLEAARILARRNPsDklILaCRTQAKADGTAQKILEETPAAnlVPAECDLASLNSVK---KFAASLDGKLDVVCYNAGLaLNTQGEIERTADGFERTIGTNHLGHFYLHHLLEP-KLNTGNGKAVITAS 267
                  9********************9865313333314456778899999977765550055567788877777...56777889**********934667789999999********9999999877655.46778555555544 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.0027
    TIGR01832 163 ltkllanewakkginvnaiaPGyle 187
                  l + la++ a+k++ vna +PG ++
  MMETSP1061-20121228|41146_1 326 LQRKLAADDATKNVVVNAFSPGLIT 350
                  7899******************986 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.6e-09   6.6e-07     415     530 ..     131     246 ..     123     260 .. 0.88
   2 ?   -0.6   0.0      0.16        67     565     606 ..     311     355 ..     306     371 .. 0.73

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.6e-09
    TIGR02632 415 rvalvtGgasGiGrevarrlvde..GahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskple.eteleeWdlnldilatGyfl 530
                  + +l+tG  sGiG e ar l+ +     ++la   +++a+ +a+++ ++  a + v  + d+++ ++vk+    +a   G +d+v  naG+a  ++ e e++++ +++++  +  G+f 
  MMETSP1061-20121228|41146_1 131 KTVLITGCNSGIGLEAARILARRnpSDKLILACRTQAKADGTAQKILEETPAANLVPAECDLASLNSVKKF---AASLDGKLDVVCYNAGLALNTQGEiERTADGFERTIGTNHLGHFY 246
                  7899****************97622578****************************************975...3444599***********9887663778999*****999999996 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.16
    TIGR02632 565 aysaakaaea....hlvrllaielaelgirvntvaPdavlrGsgif 606
                  ay+ +k  ++     l r la++ a++ + vn+  P  ++  sg f
  MMETSP1061-20121228|41146_1 311 AYKDSKLCNIlfcrELQRKLAADDATKNVVVNAFSPG-LITSSGFF 355
                  66666666552221467889*************9995.55666666 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.1e-09   1.3e-06       3     141 ..     130     269 ..     129     291 .. 0.78
   2 ?    0.3   0.0       0.2        80     148     182 ..     308     342 ..     303     360 .. 0.78

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.1e-09
    TIGR03206   3 dkvaivtgggggiggaicrrfaeeg.akvavldlnaea.aekvaaairekggkaeav..avditdrasvdaavaaaeealgpvdvlvnnagwdvlkp.flktekaewerliainltgalymhhavlkgmverkagrivniasda 141
                  +k++++tg   gig    r +a+   +   +l   ++a a+  a++i e+   a+ v   +d+++ +sv+   a+ +   g  dv+  nag     +  ++     +er i  n  g +y+hh + +  ++ ++g+ v  as  
  MMETSP1061-20121228|41146_1 130 GKTVLITGCNSGIGLEAARILARRNpSDKLILACRTQAkADGTAQKILEETPAANLVpaECDLASLNSVKKFAASLD---GKLDVVCYNAGLALNTQgEIERTADGFERTIGTNHLGHFYLHHLLEPK-LNTGNGKAVITASSV 269
                  69************99999999865244445555554438889****9999988876447*********98766654...889********9764331344445579****************87665.577888888888765 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.2
    TIGR03206 148 geavyaackgglvafsktlarelarhgitvnvvcp 182
                  g+  y   k   + f + l r+la ++ t nvv  
  MMETSP1061-20121228|41146_1 308 GDKAYKDSKLCNILFCRELQRKLAADDATKNVVVN 342
                  66778888888889999999988888888888753 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   7.6e-06    0.0031       2     139 ..     132     270 ..     131     293 .. 0.73
   2 !   11.1   0.0   0.00012     0.048     161     199 ..     327     365 ..     304     396 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 7.6e-06
    TIGR01829   2 valvtGglgGiGtaickrlakd..Gykvvanvapneerakewlq.ekevegfdvavvkadvssfeeakaavakveaelGpvdvlvnnaGitrdavfk.kmtkeqWeevidtnlnsvfnvtrpviegmlergfGr.iinissvn 139
                    l+tG+  GiG + ++ la+     k++ ++++++++    ++  +e    +++ ++ d++s ++ k+  a++    G++dv+  naG++ ++  +   t++ +e  i tn  + f + + +  ++ + g G+ +i  ssv 
  MMETSP1061-20121228|41146_1 132 TVLITGCNSGIGLEAARILARRnpSDKLILACRTQAKADGTAQKiLEETPAANLVPAECDLASLNSVKKFAASL---DGKLDVVCYNAGLALNTQGEiERTADGFERTIGTNHLGHFYLHHLLEPKL-NTGNGKaVITASSVH 270
                  579***********9999987522467888888755544333331345555689999*****999888776655...59***********9887654245778899******999999877666655.555554378888886 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 0.00012
    TIGR01829 161 tkalaqegakkgvtvnviaPGyiatemvkavredvlkki 199
                   + la++ a+k+v+vn+ +PG i+       ++ v +++
  MMETSP1061-20121228|41146_1 327 QRKLAADDATKNVVVNAFSPGLITSSGFFRYQNPVFASV 365
                  46799*****************99887777777776665 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   5.5e-07   0.00023       1     114 [.     131     246 ..     131     278 .. 0.79
   2 !    5.5   0.0    0.0052       2.1     157     184 ..     323     350 ..     300     358 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 5.5e-07
    TIGR02415   1 kvalvtGaaqGiGkaiaerLakd..GfavavadlneetaketakelkekgtkavavkldvsdkseveeaveqaveklGeldvlvnnaGvalvt.pileiteeeleklynvnvkgvlf 114
                  k+ l+tG+  GiG + a+ La+     ++++a   +++a  ta+++ e+   a  v ++  d ++++++ + a++  G+ldv+  naG+al t   +e t + +e+    n  g ++
  MMETSP1061-20121228|41146_1 131 KTVLITGCNSGIGLEAARILARRnpSDKLILACRTQAKADGTAQKILEETPAANLVPAEC-DLASLNSVKKFAASLDGKLDVVCYNAGLALNTqGEIERTADGFERTIGTNHLGHFY 246
                  789************99999965114567777778999***********99999998875.5567778888999999************9865145688888899888888877766 PP

  == domain 2    score: 5.5 bits;  conditional E-value: 0.0052
    TIGR02415 157 vrgltqtaakeLakkgitvnayaPGivk 184
                   r l +  a + a+k + vna++PG++ 
  MMETSP1061-20121228|41146_1 323 CRELQRKLAADDATKNVVVNAFSPGLIT 350
                  4778888889999************986 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   6.7e-07   0.00028      37     154 ..     153     269 ..     128     274 .. 0.75
   2 ?   -3.7   0.0       3.4   1.4e+03     176     199 ..     326     349 ..     325     352 .. 0.82

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 6.7e-07
    TIGR03971  37 eplsdvvtypaatredldetaklv..ealGrkvlarkadvrkleelravveegveefGrldvvvanaGv.lsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssv 154
                  ++ sd +  +  t++  d ta+ +  e+     +  ++d+ +l+ +++    + +  G+ldvv+ naG+ l+     e +++ ++ ++ +n  G +   +   P+ ++ +nG ++i  ssv
  MMETSP1061-20121228|41146_1 153 RNPSDKLILACRTQAKADGTAQKIleETPAANLVPAECDLASLNSVKKF---AASLDGKLDVVCYNAGLaLNTQGEIERTADGFERTIGTNHLGHFYLHHLLEPK-LNTGNGKAVITASSV 269
                  5666777788889999999998773223344556677787777777765...45677***********834677789999***************9988888787.58999****999998 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 3.4
    TIGR03971 176 ltktlanelaeygirvnsihPtsv 199
                  l + la + a  ++ vn+ +P  +
  MMETSP1061-20121228|41146_1 326 LQRKLAADDATKNVVVNAFSPGLI 349
                  677899999999999999999766 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   0.0   6.1e-07   0.00025       3     106 ..     133     234 ..     131     250 .. 0.90

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 6.1e-07
    TIGR01500   3 llvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrek 106
                  +l+tG   G+G e a+ la+  +++  +l+L  R +     + ++i  e++a  ++    dl + + v+++  +l  +     y+  l +n +G +  ++ +++
  MMETSP1061-20121228|41146_1 133 VLITGCNSGIGLEAARILAR--RNPSDKLILACRTQAKADGTAQKILEETPAANLVPAECDLASLNSVKKFAASLDGKLDVVCYNAGLALNTQGEIERTADGFE 234
                  79******************..788899***********************************************99999999999999999998887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (456 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.33
# Mc/sec: 1823.85
//
Query:       MMETSP1061-20121228|41157_1  [L=364]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (364 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.27
# Mc/sec: 1779.41
//
Query:       MMETSP1061-20121228|41168_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 468.56
//
Query:       MMETSP1061-20121228|41185_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 576.58
//
Query:       MMETSP1061-20121228|41180_1  [L=777]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (777 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.36
# Mc/sec: 2848.76
//
Query:       MMETSP1061-20121228|41187_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1061-20121228|41203_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 413.97
//
Query:       MMETSP1061-20121228|41210_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.31
# Mc/sec: 238.43
//
Query:       MMETSP1061-20121228|41244_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 749.94
//
Query:       MMETSP1061-20121228|41246_1  [L=134]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (134 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.38
# Mc/sec: 465.44
//
Query:       MMETSP1061-20121228|41267_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.37
# Mc/sec: 185.50
//
Query:       MMETSP1061-20121228|41270_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|41273_1  [L=211]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (211 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.12s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1113.99
//
Query:       MMETSP1061-20121228|41285_1  [L=125]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-08   30.3   0.0    7.3e-08   30.1   0.0    1.0  1  TIGR03614 RutB: pyrimidine utilization protein B
  ------ inclusion threshold ------
      0.025   12.3   0.0      0.036   11.7   0.0    1.2  1  TIGR03745 conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family


Domain annotation for each model (and alignments):
>> TIGR03614  RutB: pyrimidine utilization protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.1   0.0   3.6e-11   7.3e-08     121     199 ..       6      83 ..       2     100 .. 0.89

  Alignments for each domain:
  == domain 1    score: 30.1 bits;  conditional E-value: 3.6e-11
    TIGR03614 121 tpqpgdivlektrysgffntaldsvlrargirnlvfvgiatnvcvestlrdgffleyfgvvledathqagpkflqkaal 199
                  +p+ +++++ k+  s   nt+l   l++ gi +++  g+ t v v+ +    f   y  vv+eda+ + g    ++aal
  MMETSP1061-20121228|41285_1   6 RPKENEVIIVKPSLSSTTNTSLLDTLKTFGIDTVLVCGLITSVSVQHSAYGIFEAGYRTVVVEDACADRGKAR-HEAAL 83 
                  799****************************************************************999654.55554 PP

>> TIGR03745  conj_TIGR03745: integrating conjugative element membrane protein, PFL_4702 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   1.8e-05     0.036      25      53 ..      20      48 ..      13      64 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 1.8e-05
    TIGR03745 25 srgegsgilqtlknylydgllllgLliaa 53
                 s+++ +++l+tlk ++ d +l+ gL+  +
  MMETSP1061-20121228|41285_1 20 SSTTNTSLLDTLKTFGIDTVLVCGLITSV 48
                 4556678******************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (125 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 824.93
//
Query:       MMETSP1061-20121228|41300_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 757.20
//
Query:       MMETSP1061-20121228|41314_1  [L=549]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   2.4e-100  333.9   0.0    7.1e-48  161.2   0.0    3.0  3  TIGR00430 Q_tRNA_tgt: queuine tRNA-ribosyltransferase
    1.2e-95  318.3   0.0    1.1e-45  153.9   0.0    3.0  3  TIGR00449 tgt_general: tRNA-guanine transglycosylases, various specificities
    2.8e-07   27.1   0.0    1.1e-05   21.8   0.0    2.3  2  TIGR00432 arcsn_tRNA_tgt: archaeosine tRNA-ribosyltransferase


Domain annotation for each model (and alignments):
>> TIGR00430  Q_tRNA_tgt: queuine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.0   0.0   6.7e-24   9.2e-21       1      79 [.      86     167 ..      86     171 .. 0.92
   2 !   97.5   0.0   1.2e-31   1.7e-28      83     205 ..     201     321 ..     196     353 .. 0.82
   3 !  161.2   0.0   5.2e-51   7.1e-48     201     363 ..     352     521 ..     340     526 .. 0.92

  Alignments for each domain:
  == domain 1    score: 72.0 bits;  conditional E-value: 6.7e-24
    TIGR00430   1 felkktdkrarvGklklehg..svetPvfmPvgtlaavkgldaeelkdleaelilantyhlylrpGeevvke.lgglhkfmq 79 
                  f+++  d rar+G++++++g   v tP+fmPvgt +++kg+ ++e++d+++ +ilantyhl ++pG+e+++    glh+fm 
  MMETSP1061-20121228|41314_1  86 FHVNGIDGRARAGTVHFPNGgpPVPTPRFMPVGTKGTLKGVLPDEIADMKCPIILANTYHLEIQPGTELIDSvFNGLHNFMG 167
                  567777899*********99889***********************************************872589****95 PP

  == domain 2    score: 97.5 bits;  conditional E-value: 1.2e-31
    TIGR00430  83 ailtdsGGfqvfslsklrkieeeGvkfkspidGekieltpeksleiqealgsdiimaldec.tsypadldyaekslertlrWaersleaydrrkeeqalfgivqGgeykdlreksakdlveldf 205
                  ++ltdsGGfq+ sl++l  ++e+Gv fksp +G+ ++l pe+s++ q+++g+diim ld++ +s  ad d+ + ++ rtlrW +r+++a+    e q+lf i+qG    d+ +  ++++   +f
  MMETSP1061-20121228|41314_1 201 NLLTDSGGFQMVSLASLSVVTENGVVFKSPYSGKPMMLRPEDSIRCQNNIGADIIMQLDDViSSVAADNDRFKIATFRTLRWWDRCVKAHRAP-ERQNLFPIMQGH--LDVSKGGLREMCLAGF 321
                  69********************************************************996267889***********************999.99*********5..4444444444444433 PP

  == domain 3    score: 161.2 bits;  conditional E-value: 5.2e-51
    TIGR00430 201 veldfdGyaiGGlsvGeskedmleileyvipllPkdkPryllGvGtpedlleaiekGvdlfdCvlPtriarngtlfvsegrlkiknaky......kedtrpvdeeCdCyvCkn.ysraylrhlikakellglrlatlhnlrfllrlvekireailedrlesfkeeflekl 363
                    + ++G+aiGGl+ Ge+ked+ +++++ +  lP+d+Pryl+GvG p dl+ ++  Gvd++dCv Ptr+ar g ++v+eg +k+k+ ++      ++   p+d +C C +C +  sr+ l+ l ka++ +  +l t hn+++++ lv+++r+ail+++++ f++ef++k 
  MMETSP1061-20121228|41314_1 352 RRRRIPGFAIGGLAGGETKEDFWKVVDHACRHLPDDRPRYLMGVGYPLDLVVCTALGVDMYDCVYPTRTARFGVALVDEGLIKLKRHEFapgnltQNSDIPIDANCPCEACSRgVSRGRLHALLKANNPIAGQLITQHNVTYMMGLVTRMRKAILQKEFQPFVREFMKKH 521
                  567799**********************************************************************************9444333345579**********7648***************************************************9985 PP

>> TIGR00449  tgt_general: tRNA-guanine transglycosylases, various specificities
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.1   0.0   1.6e-21   2.2e-18       1      79 [.      86     167 ..      86     172 .. 0.92
   2 !   96.9   0.0   1.7e-31   2.4e-28      83     203 ..     201     325 ..     196     350 .. 0.86
   3 !  153.9   0.0     8e-49   1.1e-45     198     362 ..     350     521 ..     344     526 .. 0.93

  Alignments for each domain:
  == domain 1    score: 64.1 bits;  conditional E-value: 1.6e-21
    TIGR00449   1 feikkkdkraRvgklktehg..svetPvflPVgtlgavkglkaeelkklgaeiilaNtyhlylrpgekvvke.lgglHkfme 79 
                  f+++  d+raR+g+++++ g   v tP f+PVgt+g++kg+ + e++++++ iilaNtyhl  +pg++++    +glH+fm 
  MMETSP1061-20121228|41314_1  86 FHVNGIDGRARAGTVHFPNGgpPVPTPRFMPVGTKGTLKGVLPDEIADMKCPIILANTYHLEIQPGTELIDSvFNGLHNFMG 167
                  67777899***********9889*********************************************9986269*****96 PP

  == domain 2    score: 96.9 bits;  conditional E-value: 1.7e-31
    TIGR00449  83 piltDSGgfqvfslgklreieeeGvkfkspidGekieltpekileiqeelgsDiimalDec.tppeadydeaekslertlrwaeeslealkereeqaLfgivqGgt...yedLRkksaeelaeld 203
                  ++ltDSGgfq++sl++l  ++e+Gv fksp +G+ ++l pe++++ q+++g+Diim lD++ ++  ad d+ + ++ rtlrw +++++a+   e+q+Lf i+qG        LR++++ +  ++d
  MMETSP1061-20121228|41314_1 201 NLLTDSGGFQMVSLASLSVVTENGVVFKSPYSGKPMMLRPEDSIRCQNNIGADIIMQLDDViSSVAADNDRFKIATFRTLRWWDRCVKAHRAPERQNLFPIMQGHLdvsKGGLREMCLAGFKHRD 325
                  68********************************************************986267899*************************************641112346666655555554 PP

  == domain 3    score: 153.9 bits;  conditional E-value: 8e-49
    TIGR00449 198 elaeldfdgyaiGgvsvgeskedlleileevvpllPkekPryllGvGkpedlleavelGvDlfDcvaparyarngrllvtegriklknaky......keDtrpvdeeCdClvCkn.ysraylrhlikanEllglrLateHNlhvllrliekirqaikedrllefveeflekl 362
                  +++++ ++g+aiGg++ ge+ked+ +++++ +  lP+++Pryl+GvG p dl+ +++lGvD++Dcv p+r ar g +lv+eg iklk+ ++      ++   p+d +C C +C++  sr  l+ l kan     +L+t+HN+++++ l++++r+ai +++++ fv+ef++k+
  MMETSP1061-20121228|41314_1 350 TVRRRRIPGFAIGGLAGGETKEDFWKVVDHACRHLPDDRPRYLMGVGYPLDLVVCTALGVDMYDCVYPTRTARFGVALVDEGLIKLKRHEFapgnltQNSDIPIDANCPCEACSRgVSRGRLHALLKANNPIAGQLITQHNVTYMMGLVTRMRKAILQKEFQPFVREFMKKH 521
                  5667889***********************************************************************************9444333345579**********8758****************************************************997 PP

>> TIGR00432  arcsn_tRNA_tgt: archaeosine tRNA-ribosyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    2.7   0.0    0.0049       6.7      77     116 ..     218     259 ..     195     300 .. 0.76
   2 !   21.8   0.0   8.2e-09   1.1e-05     200     330 ..     375     521 ..     369     523 .. 0.75

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.0049
    TIGR00432  77 pvmtdsgsfqlseygd..vevknaeiiefqeeiGsdigtsld 116
                   v+t+ g    s y    + ++  + i+ q++iG+di+++ld
  MMETSP1061-20121228|41314_1 218 SVVTENGVVFKSPYSGkpMMLRPEDSIRCQNNIGADIIMQLD 259
                  566666665555554312456667789*************98 PP

  == domain 2    score: 21.8 bits;  conditional E-value: 8.2e-09
    TIGR00432 200 evileskselPtskPvhlfGaGhPmlfalavalGcdlfdsaayalyakddrylteeGtkkle.......elk.lkefP....cscpvcsdytPe.elaslekee...rerliaehnlyvsfeeiekikqaikdgsllelveervrah 330
                  +v+ ++  +lP  +P++l+G+G+P+ + +  alG d++d       a+    l  eG  kl+       +l    ++P    c c  cs    +  l++l k +     +li++hn+   +  + ++++ai + ++  +v e ++ h
  MMETSP1061-20121228|41314_1 375 KVVDHACRHLPDDRPRYLMGVGYPLDLVVCTALGVDMYDCVYPTRTARFGVALVDEGLIKLKrhefapgNLTqNSDIPidanCPCEACSRGVSRgRLHALLKANnpiAGQLITQHNVTYMMGLVTRMRKAILQKEFQPFVREFMKKH 521
                  566677789******************************99999999999999999999997222222222222345555559999999765432555554444111689******99999999******99988888887766665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (549 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.39
# Mc/sec: 1858.00
//
Query:       MMETSP1061-20121228|41326_1  [L=816]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (816 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.13s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 3474.29
//
Query:       MMETSP1061-20121228|41331_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 437.65
//
Query:       MMETSP1061-20121228|41328_1  [L=620]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (620 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2922.62
//
Query:       MMETSP1061-20121228|41345_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|41354_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 383.40
//
Query:       MMETSP1061-20121228|41355_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 653.35
//
Query:       MMETSP1061-20121228|41370_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0098   13.1   1.4      0.012   12.8   1.0    1.1  1  TIGR00837 araaP: aromatic amino acid transport protein


Domain annotation for each model (and alignments):
>> TIGR00837  araaP: aromatic amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   1.0   2.8e-06     0.012       6      48 ..      36      78 ..      31      83 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 2.8e-06
    TIGR00837  6 iagtviGaGmlalPvstagawfivsllllillwllmllsglll 48
                 i+   +GaG+l++P + +  + + +   l+++ +l +++ l+l
  MMETSP1061-20121228|41370_1 36 IIISFVGAGLLGMPNAFSKSGWLLGSCTLVVVSALNVYAMLCL 78
                 455689**************99999999999999999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|41374_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|41382_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   10.6   7.3      0.018   10.5   5.0    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
      0.025   10.1   8.4      0.027   10.0   5.8    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.033   12.3   7.1      0.033   12.3   4.9    1.1  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family
       0.14    7.9   2.9       0.14    8.0   2.0    1.0  1  TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit
       0.15    8.1   5.8       0.16    8.0   4.0    1.0  1  TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB


Domain annotation for each model (and alignments):
>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   5.0   2.2e-05     0.018     311     382 ..       8      79 ..       2      83 .] 0.64

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 2.2e-05
    TIGR02169 311 iaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaa 382
                  ++ +e+ +++ e  +a ++ e++ ++++ +ele+ + + +++ ++++e +++++++ ++ ++e+e+++ + +
  MMETSP1061-20121228|41382_1   8 LRGAERAVHETETSNAILNRERHDMQKRTTELEEILGNAERRVASVSELYEKEQATANQRKNEIEALQVSRD 79 
                  445566666677777777777777777777777777777777777777777777777777777776665554 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   5.8   3.3e-05     0.027     817     885 ..      11      79 ..       2      83 .] 0.34

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 3.3e-05
    TIGR02168 817 lkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkeka 885
                   +++++e+e+  + l++e ++++k+ +elee + ++e +++s+++  e+ +++ ++ ++e+e+l+ +++
  MMETSP1061-20121228|41382_1  11 AERAVHETETSNAILNRERHDMQKRTTELEEILGNAERRVASVSELYEKEQATANQRKNEIEALQVSRD 79 
                  223333333333333333333333333333333333333333333333333333333333333333333 PP

>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   4.9     4e-05     0.033      16      88 ..       6      75 ..       1      83 [] 0.84

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 4e-05
    TIGR03495 16 lqsqrlrearaslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaeallaqrekrierLl 88
                 lq    + a ++ e+ +++l++++++++k++  le +l +a+r+ +   +L+++    +a+++qr+++ie L 
  MMETSP1061-20121228|41382_1  6 LQLRGAERAVHETETSNAILNRERHDMQKRTTELEEILGNAERRVASVSELYEK---EQATANQRKNEIEALQ 75
                 5556667889999******************************99999888865...567899******9985 PP

>> TIGR01062  parC_Gneg: DNA topoisomerase IV, A subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   2.0   0.00017      0.14     426     481 ..      22      76 ..       3      83 .] 0.75

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00017
    TIGR01062 426 ekkikdeqselekeraqlekilks.erklnqlvkkeikadakkygdarrssleeree 481
                  +  ++ e+ +++k+ ++le+il++ er++ ++   e+ +++++ +++r+ ++e  + 
  MMETSP1061-20121228|41382_1  22 NAILNRERHDMQKRTTELEEILGNaERRVASV--SELYEKEQATANQRKNEIEALQV 76 
                  3456789***************9834555554..69999999999999998876554 PP

>> TIGR03346  chaperone_ClpB: ATP-dependent chaperone protein ClpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   4.0    0.0002      0.16     410     485 ..      11      82 ..       5      83 .] 0.83

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0002
    TIGR03346 410 ldrriiqlkierealkkekdeaskerleklekelaeleeesaeleekwkaekekiekvkkikeelekvklelekak 485
                   +r + + +  ++ l++e+  + ++r ++le+ l + e++ a+++e +++e+++ +   + k+e+e+++++ ++a+
  MMETSP1061-20121228|41382_1  11 AERAVHETETSNAILNRERH-DMQKRTTELEEILGNAERRVASVSELYEKEQATAN---QRKNEIEALQVSRDEAE 82 
                  67888888999999999987.67899***********************9998755...56778888887777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 497.96
//
Query:       MMETSP1061-20121228|41388_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 625.51
//
Query:       MMETSP1061-20121228|41381_1  [L=576]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (576 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.13s 00:00:00.41 Elapsed: 00:00:00.26
# Mc/sec: 2924.07
//
Query:       MMETSP1061-20121228|41383_1  [L=632]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-12   42.7  13.5    4.9e-11   39.6   9.3    2.0  1  TIGR00815 sulP: sulfate permease


Domain annotation for each model (and alignments):
>> TIGR00815  sulP: sulfate permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.6   9.3   1.2e-14   4.9e-11     107     429 ..     283     593 ..     212     619 .. 0.69

  Alignments for each domain:
  == domain 1    score: 39.6 bits;  conditional E-value: 1.2e-14
    TIGR00815 107 GivqvllGllrlGflveflskavisGFmtGaaitIllsQikkllGlsivntredtlkvvistwkslpntklanlldlviglvlllfllatkklakrlkkllfliavaelvvvivatlavsvg....ksskkrgvsilghipsg...pevvpekildgellsalapdaiaial.vgllesiaiaksfarmkgykvdanqElvaiGiaNiigsffscypatgslsrsavkakagcktalsavvtaivvllvllvlapllllipkavlaaiiivavrglvdlkelyklw.kvsklDvvvllvtvflvvftsieiGllvgvalSlallllriakpk 429
                  G+ ++++G l l+  v+ l+  v++G+++ ++  ++ s +  + G s+      tl  + + ++++          ++ g+++++ +       ++++++ +l+  ++l+ v++ +++ + g     + +   +   +++p+       ++   +d+  l++l  + + + + v+l  s+ +a +  +m+   ++ n+El  +Gi N + +++++y+ + ++s++  + + g+++++s++  a + llv++v  p+l ++p+   ++++ ++  +lv ++ l++++ kv   + ++ l t+ l   + +e+G++ gv+l +++ ll+i   +
  MMETSP1061-20121228|41383_1 283 GVGLIIIGKLGLASYVQMLPTCVVAGYLAYIGWFVGYSGLGIMAGESSL-----TLALLMEKFIYILPG-------VAGGAFVYISV-------RKFRHVAVLPLCITLLLVTFYFILLITGtsieEATETGWIRKTEEVPAWyqtWDYLQVGKVDWGALPQLWLTWVGMLFvVALSSSLDVAAIELEMN-EPLNYNKELRMVGISNFVSGLTGGYTGSYIFSQTIFSLRIGVRSRISGFSIAFFTLLVIVVPFPVLSYVPNFFYGSLLSMICIDLV-YEWLWEFRyKVTLGEYLIGLSTFGLIQGLGVEYGIVAGVLLYVICRLLKIDVGE 593
                  7777777888888888888888888888888888888877777777662.....222222222222222.......12223322222.......256777788888888888888777777755433344444555667888732223333344555566665555554433134444555555444554.57999*****************************************************************************9987.88899996599***********************************99997654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (632 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       157  (0.038274); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.16s 00:00:00.46 Elapsed: 00:00:00.32
# Mc/sec: 2606.78
//
Query:       MMETSP1061-20121228|41403_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 458.49
//
Query:       MMETSP1061-20121228|41407_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 314.26
//
Query:       MMETSP1061-20121228|41431_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.9   0.2      0.012   12.8   0.1    1.1  1  TIGR02152 D_ribokin_bact: ribokinase


Domain annotation for each model (and alignments):
>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.1     3e-06     0.012      67     128 ..      24      85 ..      18      92 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 3e-06
    TIGR02152  67 llenlkkegidteyvkkvkktstGvAlilvdeegeN.sIvvvaGaneeltpedvkaaeekike 128
                  +++n++ ++ +++  ++++ t++G+A+++ ++ g+N +I++  G n + +++  +++e++ ++
  MMETSP1061-20121228|41431_1  24 VRSNFRGNDRHISGGRTTNGTNSGIAYVTDNKCGNNnQILIDGGGNGRNDSSS-NRSEHRTSK 85 
                  5667777777788888999*************987616777777777655544.444444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 557.95
//
Query:       MMETSP1061-20121228|41442_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 497.96
//
Query:       MMETSP1061-20121228|41433_1  [L=933]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (933 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.15s 00:00:00.54 Elapsed: 00:00:00.31
# Mc/sec: 3972.45
//
Query:       MMETSP1061-20121228|41449_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|41459_1  [L=310]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-11   41.8   0.0    4.3e-11   41.3   0.0    1.3  1  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0     1e-14   4.3e-11       2     139 ..      51     202 ..      50     206 .. 0.76

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 1e-14
    TIGR01444   2 viDiGAniGdvslvfaravaegrviafEPlpd..lle..kleenvklnnlknvkllnaAvgdreg.......eleftvsddatgnsslaadselaees.eieVevvtlddlveeag...lekvdllKiDvEGaEleVLrglaetleekvpaiv 139
                  ++D+G+  G ++l +  ++++ +++++EP+    ll+  +l+ n+ ++++kn+k++   +g +++       ++    + ++tg+ s+ + +e+   s e  V++++l+++++ea    +e++++l +D++G+E+    +l++t  e++p i+
  MMETSP1061-20121228|41459_1  51 FVDVGSCLGLTCLLVNAKYPGTKIVSIEPASPswLLQelNLRCNLPKKDFKNIKVILGGIGPNTEdeddlmaKFMWRPT-STTGTRSWTPADEDRAGSvELLVRLRKLKSILAEADvprPEQIGVLNLDCQGCEYNLVPNLSQTEFEQIPSIL 202
                  89***************************97612445114566777788888999999999888888877543333333.3555555555553333336999************987778999**************9999887777777776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (310 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1704.86
//
Query:       MMETSP1061-20121228|41461_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.25
# Mc/sec: 1647.22
//
Query:       MMETSP1061-20121228|41483_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|41491_1  [L=276]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (276 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1734.71
//
Query:       MMETSP1061-20121228|41526_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|41541_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.072   11.3   2.2      0.086   11.0   0.1    2.2  3  TIGR02811 formate_TAT: formate dehydrogenase region TAT target
        1.7    7.0   8.0       0.17   10.2   0.3    2.6  3  TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.1   4.2e-05     0.086       9      44 ..      40      74 ..      34      88 .. 0.81
   2 ?   -2.0   0.0       0.5     1e+03      32      32 ..      94      94 ..      80     114 .. 0.53
   3 ?   -3.1   0.0       1.1   2.3e+03       5      14 ..     127     136 ..     123     138 .. 0.72

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 4.2e-05
    TIGR02811  9 lsRRdLLkglavgaaagavaaatgrvasasaaaeps 44
                  +RRd+L  +a+ ++ag v+   + va a +a+ ++
  MMETSP1061-20121228|41541_1 40 AGRRDFLN-AAMSTTAGLVMSSMPLVAMADEAQISD 74
                 79*****5.699***************988776544 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.5
    TIGR02811 32 g 32
                  
  MMETSP1061-20121228|41541_1 94 E 94
                 2 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.1
    TIGR02811   5 qkadlsRRdL 14 
                  q ++  RR+ 
  MMETSP1061-20121228|41541_1 127 QMSNQERRNA 136
                  5678889985 PP

>> TIGR01409  TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.5      0.08   1.6e+02      10      22 ..      10      25 ..       7      31 .. 0.63
   2 ?   10.2   0.3   8.2e-05      0.17       3      28 ..      42      66 ..      41      67 .. 0.69
   3 ?   -3.1   0.0       1.4   2.8e+03       3       7 ..     133     137 ..     132     137 .. 0.80

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.08
    TIGR01409 10 aaaagaaaglgl...l 22
                 +a+ ++aa+l +    
  MMETSP1061-20121228|41541_1 10 LALLVCAAALHVkafT 25
                 5778888887545554 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 8.2e-05
    TIGR01409  3 RRdFLkaa..aaagaaaglglllpspar 28
                 RRdFL aa  ++ag+++     +p +a+
  MMETSP1061-20121228|41541_1 42 RRDFLNAAmsTTAGLVMSS---MPLVAM 66
                 ********86666665544...566665 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 1.4
    TIGR01409   3 RRdFL 7  
                  RR+ L
  MMETSP1061-20121228|41541_1 133 RRNAL 137
                  9*987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       222  (0.0541199); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 911.35
//
Query:       MMETSP1061-20121228|41554_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 451.54
//
Query:       MMETSP1061-20121228|41559_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 629.95
//
Query:       MMETSP1061-20121228|41550_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2353.05
//
Query:       MMETSP1061-20121228|41577_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.5e-08   30.3   0.0    1.9e-07   29.2   0.0    1.6  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.2   0.0   4.6e-11   1.9e-07       5      55 ..      62     107 ..      59     109 .. 0.92

  Alignments for each domain:
  == domain 1    score: 29.2 bits;  conditional E-value: 4.6e-11
    TIGR01557   5 vWteelhrrFlqAvqklGgedkatPkkIlelmkveklTreqvkSHlQkyrl 55 
                  +Wt+++   Fl +++ +G++ +   kk  +++  ++ +  q+kSH+Qk   
  MMETSP1061-20121228|41577_1  62 RWTPDEKILFLYGLRMFGKGRW---KKM-SVYLPQR-SLVQIKSHAQKVLK 107
                  8*********************...***.9999999.9**********765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.11s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 1251.26
//
Query:       MMETSP1061-20121228|41598_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 479.33
//
Query:       MMETSP1061-20121228|41614_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 270.58
//
Query:       MMETSP1061-20121228|41607_1  [L=454]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (454 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2304.73
//
Query:       MMETSP1061-20121228|41624_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.32
# Mc/sec: 334.10
//
Query:       MMETSP1061-20121228|41621_1  [L=612]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-05   19.1  85.4    9.6e-05   18.1  32.1    2.1  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
    0.00038   16.1  86.1     0.0022   13.5  33.7    2.1  2  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.3  21.4   0.00017      0.34     781     913 ..     209     334 ..     120     344 .. 0.55
   2 !   18.1  32.1   4.7e-08   9.6e-05     687     922 ..     347     576 ..     338     601 .. 0.54

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.00017
    TIGR02168 781 eaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvk 913
                  e   ++++ +++++++ ++ k+ re++ e +++l+++++ea+   ++le++++  a++++ +e+ ++  ++++++ie    ++ee++e +eel++e ++ll+e ++++++ ++ ++el++l+ ++re ++k+ 
  MMETSP1061-20121228|41621_1 209 ELLMQRDKHREQLNRTLAKYKERRERFIEENNQLRDERDEAR---RELEKCKRSYASQKRAAERNDRLQSQQKNRIE----SLEEQRELCEELQSERDALLDEITRAQQQQQQTKAELSALKVKVREDSQKRL 334
                  233333333333333333333444444444444443333333...45555555555555555444444444444444....4444444455556666666666666666666666666666666666555554 PP

  == domain 2    score: 18.1 bits;  conditional E-value: 4.7e-08
    TIGR02168 687 eieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleel 922
                  e +e+++k a l+ el+ ++k+l++ +e l++ +ke ++le   +++kk+l++++ +  + +e+++      ee+++ + ++++  ee +++lk +++ei   e++i++lk+elk+++e+++ +e+  t+l ee+++ + + + +  e++a+++e  +l+++ +el+ ++es+ a+++ ++e ++ l++++ + +++ +++ e++++lr++ +++++e+ + + ++++l++ l   
  MMETSP1061-20121228|41621_1 347 EQKEAKQKEALLNSELDIMSKTLKAEQEFLKSRNKEFDQLEALYRSAKKDLRSIKMTMIAKKEEMD------EEIKAVKDSQKRLSEEHKQTLKLKSDEIFMAETTIRNLKAELKSTKEKMNLKEKSTTALIEEMKKSKGKSDAVDPEVKAIREENSRLKSEVKELQRQVESYLANMALQQEFCDSLKSRIYKEQENEQQQVEEIHKLRKRIKKQQKEVAAKDLQINQLKQLLGDV 576
                  334444444444444444444444444444444444444444444444444444443333333332......23333333333333333344455566666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666655444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.4  28.4   0.00031      0.63     333     502 ..     212     392 ..     160     398 .. 0.68
   2 !   13.5  33.7   1.1e-06    0.0022     671     900 ..     349     588 ..     344     607 .. 0.75

  Alignments for each domain:
  == domain 1    score: 5.4 bits;  conditional E-value: 0.00031
    TIGR02169 333 dklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaa......elree.lkelkekleklkeel...nelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikka.eqkleqlkedlekaekelrklkeeleklekelselerelaeleaqaka 502
                   + +++ e+l+r ++++k +re+  ee ++l++e++e r+ele+ + + a      e  ++ ++++k+++e+l+e++   +el+ e+d ll+e  r+++++++ kael +++ k+ e  +++ ++ e ++   +++ +++k++ + +++el   +++l++ ++ l++ ++e+++lea  + 
  MMETSP1061-20121228|41621_1 212 MQRDKHREQLNRTLAKYKERRERFIEENNQLRDERDEARRELEKCKRSYAsqkraaERNDRlQSQQKNRIESLEEQRelcEELQSERDALLDEITRAQQQQQQTKAELSALKVKVREDSQKRLSVMESLSITwDTEQKEAKQKEALLNSELDIMSKTLKAEQEFLKSRNKEFDQLEALYRS 392
                  4445566778888888888888888888888888888888877665433300000022233133445556555554422268888888999999999999999999999998888888888888888876541344444445555556666666666666666688888888888886655 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.1e-06
    TIGR02169 671 asekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeie........keleqleeeeeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelsee..kieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelr 900
                  ++ k+k++ l+ +l+ + + l++ q+ l++++k+ d+l++  + a+k ++ i+        +  e++++ ++ +k+  ee ++ l+  ++e+  +++ + +l+ae+++ +ek++  ++   +l +e++++  k + ++ e+++++ee sr+++ ++e+++++++   + +l +e  + l+++i + +e+++++ +ei++l++++++ ++e++ +  ++++L++ l+d+++  ++ +a+  
  MMETSP1061-20121228|41621_1 349 KEAKQKEALLNSELDIMSKTLKAEQEFLKSRNKEFDQLEALYRSAKKDLRSIKmtmiakkeEMDEEIKAVKDSQKRLSEEHKQTLKLKSDEIFMAETTIRNLKAELKSTKEKMNLKEKSTTALIEEMKKSkgKSDAVDPEVKAIREENSRLKSEVKELQRQVESYLANMALQQEFCDSLKSRIYKEQENEQQQVEEIHKLRKRIKKQQKEVAAKDLQINQLKQLLGDVESGSSKTKAKSG 588
                  4555555556666666666655555555555555555555555555555544311110000444556666666677777888888999999999999999999999999999997777777765554444116778999***************************999999999999*****999******************************************999998887754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (612 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       738  (0.179912); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        22  (0.00536324); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.85u 0.15s 00:00:01.00 Elapsed: 00:00:00.74
# Mc/sec: 1091.59
//
Query:       MMETSP1061-20121228|41634_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 368.18
//
Query:       MMETSP1061-20121228|41645_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1017.42
//
Query:       MMETSP1061-20121228|41657_1  [L=374]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-05   21.4   0.2    0.00031   16.7   0.0    2.0  2  TIGR00870 trp: transient-receptor-potential calcium channel protein


Domain annotation for each model (and alignments):
>> TIGR00870  trp: transient-receptor-potential calcium channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   7.6e-08   0.00031     130     159 ..     216     245 ..     186     248 .. 0.87
   2 !    2.8   0.0    0.0012       5.1     130     156 ..     249     275 ..     246     289 .. 0.91

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 7.6e-08
    TIGR00870 130 kgitalilAihkqnyeivklLlekgasvea 159
                   g+t+l+lA  +  +e+vk L+  ga+v+a
  MMETSP1061-20121228|41657_1 216 SGQTPLHLATDRGHIECVKTLILAGADVNA 245
                  79**************************96 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.0012
    TIGR00870 130 kgitalilAihkqnyeivklLlekgas 156
                   gi+ l  A++  nye+ +lLl+ ga+
  MMETSP1061-20121228|41657_1 249 DGISILQAAAIAGNYECCRLLLALGAD 275
                  58999999***************9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (374 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1828.29
//
Query:       MMETSP1061-20121228|41667_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1345.27
//
Query:       MMETSP1061-20121228|41672_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 381.30
//
Query:       MMETSP1061-20121228|41678_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 378.75
//
Query:       MMETSP1061-20121228|41671_1  [L=472]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.38    8.6   5.1       0.89    7.4   0.5    2.3  2  TIGR00681 kdpC: K+-transporting ATPase, C subunit


Domain annotation for each model (and alignments):
>> TIGR00681  kdpC: K+-transporting ATPase, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.5   0.00022      0.89     112     157 ..     166     211 ..     148     227 .. 0.83
   2 ?    2.9   0.2    0.0052        21      66      92 ..     399     425 ..     387     455 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00022
    TIGR00681 112 avsvpvdlvtasgsGldpaispaaaklqiprvakarnisveqlerl 157
                   +++   ++ +s+s ld + s +aa+ ++  + + r+i  ++le +
  MMETSP1061-20121228|41671_1 166 HTNIHSSVMSTSSSSLDAHASFKAAAQKVADLERKREIIQRKLEIV 211
                  56667788999***************************99999754 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.0052
    TIGR00681  66 srPsaiaeseydaaasggsnlapsnpe 92 
                  +rPs+ ae + +  +  +s l+ sn +
  MMETSP1061-20121228|41671_1 399 PRPSSFAEEQRKCYVNDSSKLSSSNMN 425
                  8********************999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (472 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.36
# Mc/sec: 1730.52
//
Query:       MMETSP1061-20121228|41706_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       136  (0.0331546); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1385.89
//
Query:       MMETSP1061-20121228|41730_1  [L=278]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (278 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1667.86
//
Query:       MMETSP1061-20121228|41743_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 305.97
//
Query:       MMETSP1061-20121228|41752_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.23
# Mc/sec: 332.84
//
Query:       MMETSP1061-20121228|41766_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|41769_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.34
# Mc/sec: 1657.63
//
Query:       MMETSP1061-20121228|41786_1  [L=474]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0036   14.6   0.0     0.0059   13.9   0.0    1.2  1  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific


Domain annotation for each model (and alignments):
>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   1.4e-06    0.0059      93     151 ..     259     330 ..     247     339 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.4e-06
    TIGR03534  93 lDlgtGsGaIalalakel..............pdakviavDiseeAlkvarkNakrlglkeveflksdlleal 151
                  l+lg+G Ga  +al k l              ++  v+a+D  ++Al+++ +Nak+++++ + +   d +++ 
  MMETSP1061-20121228|41786_1 259 LELGSGIGAPSIALSKSLerigfpslshrhptSQPWVVATDQAPHALALTIANAKNNDVD-IGIATVDHFNQS 330
                  799******99999999999**********8877889**********************9.888888887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (474 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.36
# Mc/sec: 1737.86
//
Query:       MMETSP1061-20121228|41805_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.32
# Mc/sec: 1060.04
//
Query:       MMETSP1061-20121228|41841_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 315.63
//
Query:       MMETSP1061-20121228|41852_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 422.37
//
Query:       MMETSP1061-20121228|41867_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 335.97
//
Query:       MMETSP1061-20121228|41879_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 477.19
//
Query:       MMETSP1061-20121228|41886_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 535.29
//
Query:       MMETSP1061-20121228|41909_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 930.52
//
Query:       MMETSP1061-20121228|41920_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 358.26
//
Query:       MMETSP1061-20121228|41930_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|41936_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-15   53.7   0.0    1.7e-07   28.8   0.0    2.1  2  TIGR00083 ribF: riboflavin biosynthesis protein RibF


Domain annotation for each model (and alignments):
>> TIGR00083  ribF: riboflavin biosynthesis protein RibF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0   4.1e-11   1.7e-07     169     244 ..      98     188 ..      90     200 .. 0.80
   2 !   22.9   0.0   2.6e-09   1.1e-05     247     286 ..     218     257 ..     215     261 .. 0.93

  Alignments for each domain:
  == domain 1    score: 28.8 bits;  conditional E-value: 4.1e-11
    TIGR00083 169 YaikGtVihgqkl.grtlgfPTaNik...lknqvlplkggvyvvvvllnee..........vlkgvaniGkrptvnskk.eelviEvhlld 244
                   + +G V +g  + g++lg PTaN+     +n +  + +gvy  +v+l+ +           +k+v n+G+ pt+++++ +e+ iE hl+ 
  MMETSP1061-20121228|41936_1  98 LRFRGSVDQGYGRgGKKLGVPTANLPsclFQNALEEVTTGVYFGWVTLERNqnsssdsdseRFKAVVNVGYSPTFEGEEnKEKIIEAHLIV 188
                  56789999998873699*******9634368889999******9998865444555556668***************9999*******985 PP

  == domain 2    score: 22.9 bits;  conditional E-value: 2.6e-09
    TIGR00083 247 qelygqeikvellkkiRneqkFssldeLkkqIekDlkqAk 286
                   + yg  ++++l+ ++R+e+kF s+ eL +qI+ D++ A+
  MMETSP1061-20121228|41936_1 218 DDFYGVPMRLQLVGFLREEKKFDSFPELIAQIHADVQDAR 257
                  699***********************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1761.77
//
Query:       MMETSP1061-20121228|41948_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 365.97
//
Query:       MMETSP1061-20121228|41942_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.09s 00:00:00.38 Elapsed: 00:00:00.43
# Mc/sec: 1777.25
//
Query:       MMETSP1061-20121228|41957_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 323.97
//
Query:       MMETSP1061-20121228|41983_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|41992_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|41996_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 364.54
//
Query:       MMETSP1061-20121228|42000_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0085   13.2   1.3     0.0097   13.0   0.9    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.9   2.4e-06    0.0097     382     432 ..      31      81 ..      23      88 .. 0.84

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.4e-06
    TIGR03752 382 aageakaqsqttttvnagggttsavtgdagkaalgkalsggvkevadWlkk 432
                    + a a+ +t +t++a+ ++t+a+t d+  ++  ++++ +v++v dW+  
  MMETSP1061-20121228|42000_1  31 KSAPARAERKTKATATATTTATTATTTDHQDEIAKQIVTTAVTKVPDWVWS 81 
                  44567788888888889999999*************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       276  (0.0672843); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|41987_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.6e-85  283.3   0.8    3.2e-78  261.6   0.8    2.2  2  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    4.7e-82  274.2   0.0    1.3e-73  246.2   0.1    2.3  2  TIGR00958 3a01208: antigen peptide transporter 2
    1.3e-78  262.7   0.7    4.7e-70  234.5   0.2    2.6  2  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    5.5e-65  217.7   0.1    4.3e-64  214.8   0.1    1.9  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    5.5e-59  197.9   0.1    1.7e-57  193.0   0.0    2.1  2  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
      1e-56  190.3   0.5    5.7e-56  187.9   0.2    1.8  2  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    5.4e-56  188.4   0.6    1.2e-55  187.3   0.0    1.8  2  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    6.3e-55  184.6   0.7    1.1e-54  183.8   0.5    1.3  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.4e-52  176.7   1.2    1.3e-50  170.3   0.0    2.8  3  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    3.5e-44  149.2   0.1    2.2e-43  146.6   0.0    2.0  2  TIGR01192 chvA: glucan exporter ATP-binding protein
    5.1e-43  145.4   4.0    2.8e-41  139.6   1.8    2.8  2  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    4.6e-38  129.0   0.0    1.4e-35  120.8   0.0    2.0  2  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.1e-29  100.5   0.0    3.4e-29   99.8   0.0    1.3  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.1e-29  100.5   0.0    3.9e-29   99.6   0.0    1.3  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    3.5e-29   99.7   0.4    1.1e-28   98.2   0.0    1.9  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    8.6e-29   98.6   0.1    4.7e-28   96.2   0.0    2.1  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    8.8e-28   95.4   0.0    1.5e-27   94.6   0.0    1.3  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
      3e-27   93.6   0.0    4.9e-27   92.9   0.0    1.3  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    3.9e-26   89.8   0.0    6.9e-26   89.0   0.0    1.4  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.1e-26   89.5   0.0    1.1e-25   88.4   0.0    1.5  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    1.2e-25   88.2   0.0    2.4e-25   87.1   0.0    1.5  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.7e-25   87.6   0.0    2.7e-25   87.0   0.0    1.3  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    3.9e-25   86.6   0.0    6.8e-25   85.8   0.0    1.3  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    6.4e-25   85.7   0.0    1.2e-24   84.8   0.0    1.5  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    4.2e-24   83.2   0.0    8.9e-24   82.1   0.0    1.5  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.7e-23   81.2   0.1    1.6e-22   78.0   0.1    2.1  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    2.2e-23   80.8   0.0    2.1e-22   77.6   0.0    2.4  2  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    3.3e-23   80.1   0.1    5.5e-23   79.3   0.0    1.3  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    1.3e-22   78.3   0.0    5.3e-22   76.3   0.0    2.1  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    1.4e-22   78.1   0.0    1.6e-13   48.4   0.0    2.3  2  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.5e-22   77.8   0.0    3.1e-22   76.8   0.0    1.4  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      4e-22   75.4   0.0    5.8e-22   74.8   0.0    1.2  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    1.1e-21   75.4   0.0    2.6e-10   38.1   0.0    2.2  2  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    1.3e-21   74.8   0.3    7.1e-21   72.3   0.2    1.9  1  TIGR01288 nodI: nodulation ABC transporter NodI
      6e-21   73.0   0.0    1.1e-20   72.1   0.0    1.4  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    7.9e-21   72.4   0.0    1.6e-19   68.1   0.0    2.2  1  TIGR01978 sufC: FeS assembly ATPase SufC
    1.2e-20   71.7   0.0      2e-20   71.0   0.0    1.3  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
      2e-20   71.2   0.0    4.9e-20   70.0   0.0    1.6  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.1e-20   71.2   0.1    8.1e-20   69.2   0.0    2.0  2  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
      9e-20   68.5   0.1    2.5e-19   67.1   0.0    1.7  2  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.3e-19   68.6   0.0    1.5e-18   65.1   0.0    2.4  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    2.2e-19   67.9   0.0    5.4e-19   66.6   0.0    1.6  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.7e-19   64.9   0.1    8.6e-12   41.1   0.0    2.1  2  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
      9e-19   65.5   0.0    2.1e-18   64.3   0.0    1.5  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.5e-18   64.4   0.0    1.9e-17   60.8   0.0    2.2  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
      2e-18   64.1   0.0    4.7e-18   62.8   0.0    1.5  1  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    8.7e-18   62.0   0.0    1.5e-10   38.2   0.0    2.2  2  TIGR00955 3a01204: pigment precursor permease
    1.6e-17   61.8   0.1    1.5e-12   45.5   0.0    2.2  2  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    2.2e-17   60.9   0.0    4.3e-17   59.9   0.0    1.4  1  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    2.8e-17   60.8   0.0    6.9e-16   56.2   0.0    2.3  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    3.1e-17   58.6   0.0    4.7e-17   58.0   0.0    1.2  1  TIGR01257 rim_protein: rim ABC transporter
    4.5e-17   60.2   0.0    1.5e-16   58.4   0.0    1.8  1  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    5.5e-17   59.4   0.0    7.9e-08   29.1   0.0    2.3  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    6.1e-17   59.1   0.0    1.2e-15   54.8   0.0    2.0  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.2e-14   51.9   0.0    1.9e-14   51.3   0.0    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    9.3e-10   35.1   0.8    5.2e-08   29.4   0.0    2.1  2  TIGR00630 uvra: excinuclease ABC subunit A
    1.3e-08   30.8   0.0    5.5e-08   28.7   0.0    1.8  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    0.00067   17.5   0.1      0.006   14.4   0.0    2.3  2  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
     0.0045   14.7   0.3      0.014   13.0   0.1    2.0  1  TIGR00152 TIGR00152: dephospho-CoA kinase
     0.0082   13.2   0.0      0.016   12.3   0.0    1.4  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
  ------ inclusion threshold ------
      0.015   10.7   0.1       0.05    9.0   0.0    1.7  2  TIGR00606 rad50: rad50


Domain annotation for each model (and alignments):
>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   1.7e-06   0.00011      23     116 ..      45     139 ..      32     157 .. 0.86
   2 !  261.6   0.8   4.7e-80   3.2e-78     121     564 ..     188     655 ..     178     665 .. 0.88

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.7e-06
    TIGR02204  23 alvaLviaaavtLslplavrklideGfskeesellneafalllvvvlvlalatalrfylvsslGervvadlrkavfahllel.spaffdknrsge 116
                   ++aLv++++v  ++p  +  l+d   sk  ++   + ++ +l + lv ++a+++r +l+ +  + + a lrk+vf+ ll+  +  +f++++ +e
  MMETSP1061-20121228|41987_1  45 GAIALVASSSVNQAVPRLMGVLMDPTKSKTANTSERKFILQILWLSLVGGTASFVRTWLLNRAQDSIAARLRKEVFESLLTKrELEWFQHAQVEE 139
                  5799*********************999998888888999999***********************************99751456777777666 PP

  == domain 2    score: 261.6 bits;  conditional E-value: 4.7e-80
    TIGR02204 121 ltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksd.......ikaPaqpk........alpakvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvd.........lreldpeelrerlalvpqdsalfaasvleniryGrpdasdeeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleel.mkgrttlviahrLatvlkadrivvldkGriveqGthaeLiak 564
                  l  d+  + + v  +l+  lr+   +i +   ++ ++++l ++ +++ P+v +  ll+ + ++k+    q    +++++++e l++i  v++ ++e+ e +++++  +++++ + k+  a  l + v+  l+ +a +++l +G r v a+k+++G+L+ f  y+ + a + + +   ++e ++    a rl  l++  sd        ++P++ +        +l ++v  ++++eev+f+y a p + +l++l++++  Ge+valvG  G+Gkst  ++l   y PqsG ++l   d         +++l++ +  + l lvpq +alf + +len+ry rpdas+++v++a ++a+  ef+skl+ G   ++G +g+++sGGq+qri +ara l++   L+Lde  s++dae e  ++ a+++  +++r  lvi hr  t+  adri+vl +Gr+ e+Gt +eL ++
  MMETSP1061-20121228|41987_1 188 LKDDVDVVANTVTNTLANLLRSSSSCIFGTYNMLRINPQLVGFSIAVAPVVGTLALLTRKYLKKIVAIQQQAAIQSASFVEERLHHIAMVKTSNRERDEVENYNKLQDECVSLGGKAALASGLSMGVMFGLSSTAFCGILLAGRRAVKAEKMTSGQLTSFGTYSFMLALGSAGVVRAMSEYSNGMQCAARLYRLIDGDSDgdgdgddDNTPQSSErdsassspSLDTDVVQKLSVEEVNFSYKANPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDaatsapltsITDLERPDQVRLLQLVPQAPALFNTTILENVRYSRPDASEADVRKAMDSAHC-EFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACrSSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKKR 655
                  6779999999****************999999999**************998888888888999999999999999**************************************999988888888888899**********************************9988888888888888888888899999886654111111134555433111111125667889999***********************************************************9965442222222226777777777789************************************997.8**************************************************************987367899********************************99764 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   1.3e-08   9.1e-07     147     258 ..      22     138 ..       2     149 .. 0.84
   2 !  246.2   0.1     2e-75   1.3e-73     264     705 ..     188     657 ..     183     664 .. 0.89

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 1.3e-08
    TIGR00958 147 d....lllrLLkllkrdlkllllalvllvlsvlgevliPkytgrvidtllqdksvealakaiflltllslaSsllaglrgGsfeyamarinlriredlfksll.rQdigFfdenktG 258
                  d       r+ + +k++   l+++ + lv s++++ ++P+  g ++d  +++++ ++  k i+ +  lsl+   + ++r   ++ a+  i +r+r+++f+sll + ++++f+++++ 
  MMETSP1061-20121228|41987_1  22 DaiakSKRRIWGEAKKEILPLSVGAIALVASSSVNQAVPRLMGVLMDPTKSKTANTSERKFILQILWLSLVGGTASFVRTWLLNRAQDSIAARLRKEVFESLLtKRELEWFQHAQVE 138
                  22334678999999***********************************999999999999999999999*******************************98678******99875 PP

  == domain 2    score: 246.2 bits;  conditional E-value: 2e-75
    TIGR00958 264 lssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayalylwttellgllilvlvLayGgqlvlegkvssgnLvsFlLYqlqlgeavreLsevysellkavGasekvFeyld............RkPqlel..sgtlapknleGkve...FqdVsFsYPsrpdkpvlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgk......p...lkeydhkylhrkvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe...sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked 705
                  l +D  +v++++++++  llr+    + + + ml + p+L   ++   P+v  ++    k+ +k+    q+a  ++   +eE l  +  V+    E  E++ +++  +e+ +l  k+ala  l + ++  l ++ + ++L  G + v ++k++sg+L+sF  Y + l+     ++  +se  ++   + +++ ++d             +Pq+++  s++  p+ ++ +v+    ++V+FsY   p+k vl+dL+f+l+ GevvalVG +GsGKSt a++l  +Y P++G v l +       p   +++++     r ++lV q P lf+ ++ eN+ Y   ++ +++v+ a  +a++ +F+s+le g +  vg +G  +sgGq+qri +ARA + +P+ L+LDe  S +Dae e+ l++     ++++r +l+i+hr +t e ad+ilvlk g+v e Gt ++L++++d
  MMETSP1061-20121228|41987_1 188 LKDDVDVVANTVTNTLANLLRSSSSCIFGTYNMLRINPQLVGFSIAVAPVVGTLALLTRKYLKKIVAIQQQAAIQSASFVEERLHHIAMVKTSNRERDEVENYNKLQDECVSLGGKAALASGLSMGVMFGLSSTAFCGILLAGRRAVKAEKMTSGQLTSFGTYSFMLALGSAGVVRAMSEYSNGMQCAARLYRLIDgdsdgdgdgdddNTPQSSErdSASSSPSLDTDVVQklsVEEVNFSYKANPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSdaatsaPltsITDLERPDQVRLLQLVPQAPALFNTTILENVRYSRPDASEADVRKAMDSAHC-EFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDamaACRSSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKKRKD 657
                  67899************************************************************999999***********************************************************************************************999999999999999999999********63333333333336788875224556676555554322289********************************************************88443122222422255666666666677899****************************9999999.6********9999**********************************************995534456889************************************9988 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.1   0.0   1.8e-08   1.2e-06       3     103 ..      29     128 ..      27     142 .. 0.89
   2 !  234.5   0.2   6.9e-72   4.7e-70     116     558 ..     186     655 ..     176     665 .. 0.84

  Alignments for each domain:
  == domain 1    score: 25.1 bits;  conditional E-value: 1.8e-08
    TIGR02203   3 kRllsyvrpykallvlalvalvlvaatesllaallkplldegfselekeevllavPllvvglvvlrGiasfvsdyllakvsnkvvrdlRkklfeklltlps 103
                  +R++  ++++   l + ++alv  ++ +  ++ l+  l+d + s+ + ++      l ++ l ++ G asfv ++ll ++  +++  lRk++fe llt  +
  MMETSP1061-20121228|41987_1  29 RRIWGEAKKEILPLSVGAIALVASSSVNQAVPRLMGVLMDPTKSK-TANTSERKFILQILWLSLVGGTASFVRTWLLNRAQDSIAARLRKEVFESLLTKRE 128
                  7999999**99********************************98.555666677799**************************************98655 PP

  == domain 2    score: 234.5 bits;  conditional E-value: 6.9e-72
    TIGR02203 116 srltfdseqvvsaatdvlkvlvretltvigllivllylsWqltlivvvllPvlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqliasvalavvllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallD...............sppekdeGtral..er.vrGkvefrnvtfrypgd.drealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvd.........ladlkLasLRrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlm.kgRttlviahRLstiekaDrivvlddGkiverGtheeLlar 558
                  + l  d++ v++++t+ l  l+r + + i+ +  +l ++ ql    ++++Pv+++l+  ++k l+ki   +q++  + ++ vee l+    vk  + +  e + +++++++ ++l+ k a as+ls  ++  + s a+  +ll+     +a+++t G+l++f t   +l      +    ++  +g+  a +++ l+D               +++e+d+   ++  +  v  k+++++v+f y+ + ++++l+++s++++ GevvalvG+ GsGkst +++l+  y p+sG + l + d         + dl+  +  r + lv q   LF+ ti env+Y++  +++ea+v++a+  a+  ++v kl+ Gl  +vG+ng k+sGGqRqR+ +aRa+l +   L+LDe  s++D+e e  +++a+ +    +R  lvi hR  t+e aDri+vl dG++ e+Gt eeL +r
  MMETSP1061-20121228|41987_1 186 VILKDDVDVVANTVTNTLANLLRSSSSCIFGTYNMLRINPQLVGFSIAVAPVVGTLALLTRKYLKKIVAIQQQAAIQSASFVEERLHHIAMVKTSNRERDEVENYNKLQDECVSLGGKAALASGLSMGVMFGLSSTAFCGILLAGRRAVKAEKMTSGQLTSFGTYSFMLALGSAGVVRAMSEYSNGMQCAARLYRLIDgdsdgdgdgdddntpQSSERDSASSSPslDTdVVQKLSVEEVNFSYKANpSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDaatsapltsITDLERPDQVRLLQLVPQAPALFNTTILENVRYSRP-DASEADVRKAMDSAH-CEFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRsSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKKR 655
                  556779999********************************************************************************************************************************************************97755555444444444455556677789999999982222222111111111123333322221122366799*********987366789***************************************99886654122222222444444455567899********************9.9**********9998.59**************************************************************99862699**********************************9765 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  214.8   0.1   6.5e-66   4.3e-64     284     689 ..     222     653 ..     213     659 .. 0.82

  Alignments for each domain:
  == domain 1    score: 214.8 bits;  conditional E-value: 6.5e-66
    TIGR03375 284 liggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyliaegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklpve...............reeek.rllsreklkGeielknvsfkY.peeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirq.........idpadlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella.dkTlvlvtHrtslLelvdriivldkGrivadGpkdevl 689
                   i ++lv   ++++p+v  ++ll +k l+k+++ +++++ q  +++ e l+++  +k++n e+   ++++++  ++ +++ k+ l s l++ +   +   +  +++++G  +++++++t G L      s       a +   ++ y++  +   +l +l++ +++               r++++ +    +++  ++++++v+f+Y  + +ka+L+++s++++ Ge va++G++GsGKst + +l+g+y p++G v+l + d+ +         +++ d  r +++vpq ++Lf+ t+ +N+ +++p a+++++ +a++ a   efv+k   Gl  ++g +G ++SgGQrq ++laRa+l +p  l+LDEP+s++D++ e++l+++++++ + ++ l+++tHr++ Lel+dri+vl++Gr+  +G+ +e+ 
  MMETSP1061-20121228|41987_1 222 RINPQLVGFSIAVAPVVGTLALLTRKYLKKIVAIQQQAAIQSASFVEERLHHIAMVKTSNRERDEVENYNKLQDECVSLGGKAALASGLSMGVMFGLSSTAFCGILLAGRRAVKAEKMTSGQLTSFGTYSFMLALGSAGVVRAMSEYSNGMQCAARLYRLIDGDSDgdgdgdddntpqsseRDSASsSPSLDTDVVQKLSVEEVNFSYkANPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATsapltsitdLERPDQVRLLQLVPQAPALFNTTILENVRYSRPDASEADVRKAMDSAH-CEFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSsNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELK 653
                  6888999999*****************************************************************************************************************98754444333333334444444555555555555555433321111111111100003322202222345667899********445577889*******************************************9998765111111111444455567899******************************999885.68****************************************************************9988********************************988865 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.8   0.0     0.091       6.1     165     235 ..      66     137 ..      42     141 .. 0.79
   2 !  193.0   0.0   2.5e-59   1.7e-57     257     682 ..     203     656 ..     186     666 .. 0.87

  Alignments for each domain:
  == domain 1    score: 2.8 bits;  conditional E-value: 0.091
    TIGR01846 165 vidkvlvhrglstlsvlalallavavaevalsllrtylfahltsridvelgaklyrhlla.lPlsyfesrrv 235
                  ++d    + + ++ + + l +l ++++  + s++rt+l+ ++ + i + l   ++  ll+   l +f++ +v
  MMETSP1061-20121228|41987_1  66 LMDPTKSKTANTSERKFILQILWLSLVGGTASFVRTWLLNRAQDSIAARLRKEVFESLLTkRELEWFQHAQV 137
                  5555555555555556667788899999999*************************9997247899988887 PP

  == domain 2    score: 193.0 bits;  conditional E-value: 2.5e-59
    TIGR01846 257 ltvvldllfvvvfla.vmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafnmlagrv...sqPvlrlaqlWqdfqqvkialerl..........GdildsPteassagkaalpelkGai....efenirfryked.spevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPaw....lr.....rqvgvvlqenvlfsrsirdnialakPaiseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlrei.ckgrtviiiahrlstvraadrilvlekGkivesGkheellake 682
                  l  +l    + +f +  m++  p+l++  +   ++   l +     l+k v+ + +   ++ sf+ e +  i  +k+s  e    +++++   + v+ + k+  ++ l+  ++  ++ +++  +l  G ++v + +++ Gql +f  ++  +   s+ v+r    + +  q    l rl          Gd  ++P+ +++ ++ + p+l+ ++    ++e+++f yk + s  vl++ls+++  Gev+ +vG+ GsGkst + +l  +y P+ G v + + d a   P +    l      r + +v q   lf+ +i +n++ ++P++se+ v++a   a   +f+s+l+ G   +vg +G ++sGGqrqri lara++anP  l+lde  s++d+e ea++++ + +  + +r +++i+hr +t+  adrilvl++G+++e+G+ eel +++
  MMETSP1061-20121228|41987_1 203 LANLLRSSSSCIFGTyNMLRINPQLVGFSIAVAPVVGTLALLTRKYLKKIVAIQQQAAIQSASFVEERLHHIAMVKTSNRERDEVENYNKLQDECVSLGGKAALASGLSMGVMFGLSSTAFCGILLAGRRAVKAEKMTSGQLTSFGTYSFMLalgSAGVVRAMSEYSNGMQCAARLYRLidgdsdgdgdGDDDNTPQSSERDSASSSPSLDTDVvqklSVEEVNFSYKANpSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSAPLTsitdLErpdqvRLLQLVPQAPALFNTTILENVRYSRPDASEADVRKAMDSAH-CEFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACrSSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKKRK 656
                  5555555556666432699999*****99999999999************************************************************9999999888888888899999*************************87776652236789998888888888999999988877776655677899*************9998653322799******9873678***************************************************99996433335512222446778899*************************9988775.58**************************************************************9864689***********************************98763 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.47        31     145     238 ..      31     124 ..       9     138 .. 0.74
   2 !  187.9   0.2   8.4e-58   5.7e-56     261     705 ..     193     660 ..     184     665 .. 0.81

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.47
    TIGR03796 145 llkrlkgsegallllvlaglllvlpglvvpafskifvDeilveeaqewlrplllgllltallqvvltllqlallrrleiklavassarflwhil 238
                  ++ + k++   l + ++a ++   ++ +vp +  + +D    ++a++  r ++l++l   l+ ++ +++++ ll+r +  +a +  +++++ +l
  MMETSP1061-20121228|41987_1  31 IWGEAKKEILPLSVGAIALVASSSVNQAVPRLMGVLMDPTKSKTANTSERKFILQILWLSLVGGTASFVRTWLLNRAQDSIAARLRKEVFESLL 124
                  3333333333344444444444456778999999***********************************************9999999888877 PP

  == domain 2    score: 187.9 bits;  conditional E-value: 8.4e-58
    TIGR03796 261 dkvaellsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdag.klagvaiaglqsietlkAsglesdffsrwaGyqakllnaeqelgvatallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglv...selqeleadlerldDvlenpvdeelee.....eeekaaeseek..ekLsGkvelrnvtfgysal.eapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeil.fDgkpre........eiprevlanslalvdqdivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl...rrRgctciivaHRLstiRdcdeiivlerGkvverGtHeella.kegaY 705
                  d va++++++la+ + +   ++f +  ml  +++l    ia+a + v +l+l +rk  ++   +qq+a+ + a+ + + l+ i  +k s  e d ++++  +q + ++   +  +a+ l   +   l+s +   il+ g   v   ++t G+l +f +    +      +v ++   s+  + +a l rl D  +       ++     +e+++a+s+++  + +  k+ +++v+f+y+a   +++++d+s+sl+ G+ vAlvG  GsGkst a ++aG+y p sG +  +D+  ++        +++r   +  l lv q   lf++t+ +n+    +  +e+d+ +A+   a  + + +++gg+  ++  +g  +sGGqrqR+ +ARa  +nP  L+lDE  s++Dae E ++++++   r  +   ++++HR  t+  +d+i+vl+ G+v e Gt eel++ k+g  
  MMETSP1061-20121228|41987_1 193 DVVANTVTNTLANLLRSSSSCIFGTYNMLRINPQLVGFSIAVAPV-VGTLALLTRKYLKKIVAIQQQAAiQSASFVEERLHHIAMVKTSNRERDEVENYNKLQDECVSLGGKAALASGLSMGVMFGLSSTAFCGILLAGRRAVKAEKMTSGQLTSFGTYSFMLALGSAGVVRAMseySNGMQCAARLYRLIDGDSDGDGDGDDDntpqsSERDSASSSPSldTDVVQKLSVEEVNFSYKANpSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSlYDSDAATsapltsitDLERPDQVRLLQLVPQAPALFNTTILENVRYSRPDASEADVRKAMD-SAHCEFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMaacRSSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKKrKDGEL 660
                  6799*******************************9999999877.566777778777777777777661555566689******************************99999999999999999*****************************987655555444444444400044456788999998865543333222224332333333333336677888999********97636889***************************************9996256654441111111145566667889*****************************999975.555789******************************************************99988763336667789*********************************98456665 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.5   0.3       2.9   1.9e+02      71      71 ..     147     147 ..      58     297 .. 0.51
   2 !  187.3   0.0   1.8e-57   1.2e-55     306     529 .]     403     638 ..     368     638 .. 0.86

  Alignments for each domain:
  == domain 1    score: -1.5 bits;  conditional E-value: 2.9
    TIGR02857  71 a 71 
                   
  MMETSP1061-20121228|41987_1 147 D 147
                  0 PP

  == domain 2    score: 187.3 bits;  conditional E-value: 1.8e-57
    TIGR02857 306 qpeaekapltaaass.......slelenvsvay.egrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailv......ngaelaeldad...swrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela.egrtvllvaHrlalaeladkivvl 529
                  + +a+++p      s       +l++e+v+++y  + + ++l+++s++++ ge+valvG+ G+GKst+ ++l+g+ +p++G +++       +a+l++++     +  + +  vpQ+P+lf++t++en+r +r+dasea+v++a++ a+  e+v++l+ gl   +G++g ++SgGqrqR++LAra+l +   l+lDEP +++Dae ea +++a+++   ++r +l+++Hr +++elad+i+vl
  MMETSP1061-20121228|41987_1 403 RDSASSSP------SldtdvvqKLSVEEVNFSYkANPSkAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLydsdaaTSAPLTSITDLerpDQVRLLQLVPQAPALFNTTILENVRYSRPDASEADVRKAMDSAHC-EFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRsSNRGLLVITHRAKTLELADRILVL 638
                  22333333......245555579**********64444699********************************************9988875556666655511155566789***********************************99.9***************************************************************998799*******************986 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  183.8   0.5   1.6e-56   1.1e-54     113     529 ..     185     625 ..     165     626 .. 0.86

  Alignments for each domain:
  == domain 1    score: 183.8 bits;  conditional E-value: 1.6e-56
    TIGR02868 113 LarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldak............vevaeasapaaeaaas......ekptlelrdlsvsypgaee..vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvas.........lsesevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrt.vvlvthr 529
                   ++l +Dvd +++ +  ++  l+ +    +  +  +  + +++    +a++ v + + +l++++  ++  + ++++  + a+ + + l++ a  + + +  + ++++++ ++e + +  +aa a++l+ +++  +   a ++ ll+g +av +++++   l+ +   ++ +    a +  A+ ++ +  + a+R++ ++d              ++    s+++++a++s         +l ++++++sy+ ++   vl+++s+ l+ Ge va+vG+ G+GKst +++lag+ +p++G v+l + ++a+         l++ +  r+ ++++q + lF+tt++eN+r  rpda+++++ +a+ ++   + + +L++Gl   +g +g  +SGG+rqR+ lARa la+   l+LDEP+ ++Dae e++l ++++a  ++++  +++thr
  MMETSP1061-20121228|41987_1 185 AVILKDDVDVVANTVTNTLANLLRSSSSCIFGTYNMLRINPQLVGFSIAVAPVVGTL-ALLTRKYLKKIVAIQQQAAIQSASFVEERLHHIAMVKTSNRERDEVENYNKLQDECVSLGGKAALASGLSMGVMFGLSSTAFCGILLAGRRAVKAEKMTSGQLTSFGTYSFMLALGSAGVVRAMSEYSNGMQCAARLYRLIDGDsdgdgdgdddntPQ----SSERDSASSSpsldtdVVQKLSVEEVNFSYKANPSkaVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATsapltsitdLERPDQVRLLQLVPQAPALFNTTILENVRYSRPDASEADVRKAMDSAHC-EFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRgLLVITHR 625
                  567899999999999999999999998888888888888888777777777666655.5666777777777888888999999**********************************************************************************999999999999**********************99988887776544322....2222222222456664456799999999999887667*********************************************887654311111111145555668999************************************96.68999***********************************************************87665544999***7 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.44        30      51      91 ..      85     125 ..      74     137 .. 0.85
   2 ?    2.5   0.2      0.14       9.2     147     259 ..     231     343 ..     191     383 .. 0.83
   3 !  170.3   0.0   1.9e-52   1.3e-50     315     542 ..     418     654 ..     401     655 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.44
    TIGR01842  51 lvvvlylvlglleavRskvlvrigekldkalnkkifkaaie 91 
                   ++ l lv g+   vR+ +l r  +++  +l+k++f++ ++
  MMETSP1061-20121228|41987_1  85 QILWLSLVGGTASFVRTWLLNRAQDSIAARLRKEVFESLLT 125
                  45677788899999***********************9875 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.14
    TIGR01842 147 alvgavvlvalallneaatkkklkeateasikanklldsalrnaeviealgmlkeltkrWeklkskalsaqsaasdragalsalskvlRivlqslvlglGaylaikgeitaGm 259
                  +++ a v+ +lall+ +  kk ++  ++a i++ +++++ l  + ++++    ++ +++++kl+++ +s   +a+ ++g  +++   l   +   +l  G   +  +++t+G+
  MMETSP1061-20121228|41987_1 231 SIAVAPVVGTLALLTRKYLKKIVAIQQQAAIQSASFVEERLHHIAMVKTSNRERDEVENYNKLQDECVSLGGKAALASGLSMGVMFGLSSTAFCGILLAGRRAVKAEKMTSGQ 343
                  4556667899*****************************************99999999**9999999999888888877777766666666666666666666666666665 PP

  == domain 3    score: 170.3 bits;  conditional E-value: 1.9e-52
    TIGR01842 315 gelevenvslv.ppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrl...Dga......dlkqwdretlGksiGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereevlk 542
                  ++l+ve+v++  +++  k +l+++sf+l+ Ge++a++G  gsGks+ a +l G+++p+sG v l   D+a      +++  +r +  + +  +Pq   Lf+ t+ en+   + +a + +v +a   a   e++ +l+ G   ++g +G ++sgGqrqRi+LaRa+  +P ++vLDeP +++D+eGe+ l +a+ + +  ++  +vithr++ lel+d+ilvlkdG++++ G+ ee++k
  MMETSP1061-20121228|41987_1 418 QKLSVEEVNFSyKANPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLydsDAAtsapltSITDLERPDQVRLLQLVPQAPALFNTTILENVRYSRPDASEADVRKAMDSAH-CEFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKK 654
                  6899****9863788999********************************************9964433222222257888999999999*****************977777777777777766554.59****************************************************************************************************9998876 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.1   0.0      0.86        58      25      94 ..      46     122 ..      33     135 .. 0.72
   2 !  146.6   0.0   3.3e-45   2.2e-43     197     567 ..     266     664 ..     227     666 .. 0.76

  Alignments for each domain:
  == domain 1    score: -0.1 bits;  conditional E-value: 0.86
    TIGR01192  25 vianivlaaitiaepilfgriidaisskkdvl.....villlwagf..gvfniiayvlvareadrlahgrratllte 94 
                   ia +  + +  a p l+g ++d   sk+  +     ++ +lw+++  g    +   l+ r  d +a + r  +++ 
  MMETSP1061-20121228|41987_1  46 AIALVASSSVNQAVPRLMGVLMDPTKSKTANTserkfILQILWLSLvgGTASFVRTWLLNRAQDSIAARLRKEVFES 122
                  566667777888999999*9999877765433122213447887754477778888899********9999988775 PP

  == domain 2    score: 146.6 bits;  conditional E-value: 3.3e-45
    TIGR01192 197 hvsdsisnvsvvhsynrieaetkalkkftekllsaqypvldwwalasglnr....iastislviilvigtvlvkkgelsvgeviafigfanll.i...grldqlkafvtqivearakledffdle.........dsv...kereepadarelk.nvkgavefrdisfef.anssqgv.rdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvd.........iatvtreslrksiatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalr.knrttfiiahrlstvreadlvlfldqgrliekgsfdeliq.kdgrfakll 567
                   v + +  +++v++ nr  +e ++ +k  ++ +s         alasgl        s+ ++  il+ g   vk  +++ g++ +f  ++ +l +   g +  ++++ +  +++ a+l  ++d +         d +    er+  +  ++l+ +v+ ++  ++++f + an s+ v  d+sf    g+ va+vg  g+gk+t   +l  +y p+sg +++   d         i+ ++r    + +  v q   l+n +i en+r  r da++++v +a ++a   +f++k   g    vg  g ++sgg+rqr+ +ara l n   lvlde +s++d e ea +kda+ a r  nr  ++i+hr  t+  ad +l l +gr+ e g+++el + kdg++++l+
  MMETSP1061-20121228|41987_1 266 FVEERLHHIAMVKTSNRERDEVENYNKLQDECVSLGGK----AALASGLSMgvmfGLSSTAFCGILLAGRRAVKAEKMTSGQLTSFGTYSFMLaLgsaGVVRAMSEYSN-GMQCAARLYRLIDGDsdgdgdgddDNTpqsSERDSASSSPSLDtDVVQKLSVEEVNFSYkANPSKAVlNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDaatsapltsITDLERPDQVRLLQLVPQAPALFNTTILENVRYSRPDASEADVRKAMDSAH-CEFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRsSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKKrKDGELVSLM 664
                  56666777788888888888888777777777765543....4566655431111346667778888888889888899999888888886653412233444444444.456667776666532111111111444111344455566677536999999999*999855766665279**************************************9986555111112111444567777788999******************************998875.68**9999999999*************************************************98775279************************************862689998886 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.1   0.0      0.16        11     142     228 ..      46     133 ..      19     144 .. 0.80
   2 !  139.6   1.8   4.1e-43   2.8e-41     245     682 ..     195     664 ..     188     666 .. 0.71

  Alignments for each domain:
  == domain 1    score: 2.1 bits;  conditional E-value: 0.16
    TIGR03797 142 llvgllgtllglvvPlatgilldeviPdaerslllqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpa.sfFr 228
                  +++ ++ + +  +vP ++g+l+d    ++ +++  + +l +l ++l+  + ++++   + R + ++ a+l+  v++ LL  ++ ++F+
  MMETSP1061-20121228|41987_1  46 AIALVASSSVNQAVPRLMGVLMDPTKSKTANTSERKFILQILWLSLVGGTASFVRTWLLNRAQDSIAARLRKEVFESLLTKRElEWFQ 133
                  3344556778999**********99999999999999999999999999****************************99765325665 PP

  == domain 2    score: 139.6 bits;  conditional E-value: 4.1e-43
    TIGR03797 245 irrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsflafntafgsflkavtslaetlievlavvplyerakPile...............aepEvdeekvdpg...kLsGaievdrvtFrYekd.gplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsv.lyDGqd........lekldvqavRrqlGvVLQngrllsgsileniaggas.ltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVsesleklkvtR...iviAHRLSTirnadrilvleeGrvveqGsyeeLla.keGlfaela 682
                  + +++++++ + l ss  +++    +l  + +l   ++++a v+ ++ l++  +  +  + +++ + + ++++ + ++ i+ ++ +  e+    ++ k   e  +l  ka+ ++ l   +   l+  +   +  +  + ++a+k+++g++ +f t   ++  +   ++++++e  + +   +r+  +++               +  E d+++++p    ++  +++v++v+F Y+++ +++vL+d+s++ + Ge va+vG+ GsGKSt   +L g   P+sG v lyD           +++l+     r l  V Q   l+  +ilen+  + +  +  ++ +a+  a + e ++++  gl+  +  +g ++SGGQrQR+ +Ara    P  l++DE  S +D +  a   +++++ + +    +vi HR  T++ adrilvl++Grv+e+G+ eeL + k+G + +l+
  MMETSP1061-20121228|41987_1 195 VANTVTNTLANLLRSSSSCIFGTYNMLRINPQLVGFSIAVAPVVGTLALLTRKYLKKIVAIQQQAAIQSASFVEERLHHIAMVKTSNRERDEVENYNKLQDECVSLGGKAALASGLSMGVMFGLSSTAFCGILLAGRRAVKAEKMTSGQLTSFGTYSFMLALGSAGVVRAMSEYSNGMQCAARLYRLIDgdsdgdgdgdddntpQSSERDSASSSPSldtDVVQKLSVEEVNFSYKANpSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVsLYDSDAatsapltsITDLERPDQVRLLQLVPQAPALFNTTILENVRYSRPdASEADVRKAMDSAHC-EFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNrglLVITHRAKTLELADRILVLKDGRVAEEGTLEELKKrKDGELVSLM 664
                  55666666666666777777777777777777766666666555444444444444444444444444445556667777777777777777777777777777777766666655554444444444333333334444677777777766666555555555555555555555555555554444311111111111111133455555666642225666889********9884789*****************************************9955998642222222256677777778899*********************97888888888888877.57***********************************************************9999876533559********************************985778888887 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.1     0.011      0.76     284     418 ..     214     348 ..     187     358 .. 0.67
   2 !  120.8   0.0     2e-37   1.4e-35     468     699 ..     414     656 ..     398     665 .. 0.88

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.011
    TIGR01193 284 vivglvlvlqniklfllslvaiPvyaviiilfkktfeklnkdameanavlnssiie.dlnGietiksltsee...erykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallvirekltlGqlltfn 418
                  +  +  +++ n +l   s+ + Pv   + +l  k ++k+     +++a+ ++s +e  l  i  +k+ + e    e+y+k+++e +++     k a a    + +   l  +    il +G   v +ek+t Gql +f 
  MMETSP1061-20121228|41987_1 214 IFGTYNMLRINPQLVGFSIAVAPVVGTLALLTRKYLKKIVA-IQQQAAIQSASFVEeRLHHIAMVKTSNRERdevENYNKLQDECVSLGG---KAALASGLSMGVMFGLSSTAFCGILLAGRRAVKAEKMTSGQLTSFG 348
                  44455566778888888888889988877776666666655.455667777776651689999999988876111455555555555544...4556666777777777778888899999999999999999998775 PP

  == domain 2    score: 120.8 bits;  conditional E-value: 2e-37
    TIGR01193 468 enlngdievndvsysyGyg..sevledislkikknekitlvGlsGsGkstlakllvkffqaesGeillng.........kslkdidkhelrqlinylPqePfifsGsilenlllgakenvsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenllkl..kdktiifvahrlsvakksdkiivldeGkiieqGshkellken 699
                  + + ++++v++v++sy  +  + vl+d+s+++++ e+++lvG  GsGkst a +l +++ ++sG ++l +         +s++d+++    +l++ +Pq P +f+ +ilen+   +++++s+ ++ ka++ a  +  + kl+ G+   +  ++ ++sgGq+qr+ lara+l++   l+lde +s++d   e  + + +     +++ ++ ++hr +  + +d+i+vl++G++ e+G+ +el k++
  MMETSP1061-20121228|41987_1 414 TDVVQKLSVEEVNFSYKANpsKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDsdaatsaplTSITDLERPDQVRLLQLVPQAPALFNTTILENVR-YSRPDASEADVRKAMDSAHCE-FVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACrsSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKKRK 656
                  45567889999999998753378*******************************************9965222223333578999**99999*******************76.689**************9986.699*****************************************************999988766225799********************************998764 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.8   0.0   5.1e-31   3.4e-29       2     219 ..     420     643 ..     419     644 .. 0.88

  Alignments for each domain:
  == domain 1    score: 99.8 bits;  conditional E-value: 5.1e-31
    TIGR02982   2 ikirelnhyygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgke......lkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsakeakakae.elleav..gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnrildvadrivkmedGkl 219
                  ++++e+n  y  +   k vl+d++++++ ge+v l G+ GsGk t  ++++g+   q+G +++++++      l+ +++ e+ +  r + ++ qa  l+++ t  +nvr +   +++   ++a+++a+ e+++++  gl   + ++  ++sgGq+qr+ +ara+ a+P +++ deP +++d++   ++ + +    r  +  +l++th ++ l++adri+ ++dG++
  MMETSP1061-20121228|41987_1 420 LSVEEVNFSYKAN-PSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDaatsapLTSITDLERPDQVRLLQLVPQAPALFNT-TILENVRYSRPDASEADVRKAMDSAHcEFVSKLegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMA-ACRSSNRGLLVITHRAKTLELADRILVLKDGRV 643
                  6789999999765.5689************************************************999999999999999988889999*********86.999*****9876666555555444432566555447888999999************************************9999998886.57889999***********************97 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.6   0.0   5.8e-31   3.9e-29      10     229 ..     421     654 ..     414     662 .. 0.79

  Alignments for each domain:
  == domain 1    score: 99.6 bits;  conditional E-value: 5.8e-31
    TIGR03258  10 vleslrvaygar...vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrd.........lthl..ppykrnlallvqnyalfphlkveenvafGlrarkqskaliaervadal.klv.....qlsdaaarlpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralyd 229
                   +e+++ +y+a+   +vl+dls+ +  Ge++al+Gk GsGk+t   ++aG+  ++ G + + d d         +t l  p   r l l+ q  alf   ++ env +       s+a++ + +  a    v     +l  +  r   ++sGGq+qr+ lara+  +p  l+ldep s++da+  as+++ ++a      +  +l++th r ++l lad+il++k+G++++ G+ ++l +
  MMETSP1061-20121228|41987_1 421 SVEEVNFSYKANpskAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDaatsapltsITDLerPDQVRLLQLVPQAPALFN-TTILENVRYSRP--DASEADVRKAMDSAHcEFVsklegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRS--SNRGLLVITH-RAKTLELADRILVLKDGRVAEEGTLEELKK 654
                  5677777787653338***************************************99999999883222221112222335567999**********7.6999***99743..467777777766653233311111344556678899********************************************9865..6778888999.7899*******************9988865 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.2   0.0   1.6e-30   1.1e-28       2     227 ..     420     660 ..     419     666 .. 0.81

  Alignments for each domain:
  == domain 1    score: 98.2 bits;  conditional E-value: 1.6e-30
    TIGR03864   2 leveglsfaygk...rralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrr..........apkealarlGvvfqqstlDldlsveqnlryh...aaLhGlsraeaeerieealarl..glaeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaaeadaed 227
                  l+ve+++f+y +   +++l+d+s+++++ge+vaL+G nG+Gkst  s+l+++y  ++g +++  +d  +          ++ + ++ l +v q+++l  + ++ +n+ry    a+   + +a  +++ e  +++l  gl      +  +++GG+r+r+ +ara l +P  L+lDe++  +D+e  a+l +++ + +r+++ ++L  th  + +e +dr++vl+ G+v+ +G+ +el++++d+e 
  MMETSP1061-20121228|41987_1 420 LSVEEVNFSYKAnpsKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATsapltsitdlERPDQVRLLQLVPQAPAL-FNTTILENVRYSrpdASEADVRKAMDSAHCEF-VSKLegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAM-AACRSSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKKRKDGEL 660
                  89999*999975333789********************************************99886541111111111344567778999999999.689********733244444444433333333.333322799999999999************************************9998876.568899999***********************************9999875 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   96.2   0.0     7e-30   4.7e-28       9     221 ..     438     662 ..     430     667 .. 0.83

  Alignments for each domain:
  == domain 1    score: 96.2 bits;  conditional E-value: 7e-30
    TIGR01188   9 vdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDv...........vrepdevRrsigvvpqkasvdedLtarenlell...gelyglpkkeaeeraeellelve..lkeaadkkvktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKervgkevve 221
                  ++++++++++gev++l+G nG GK+tt ++L+++ +P+sG + +   D            ++ pd+vR  + +vpq  ++ ++ t  en+      ++  ++ k++  ++  e +  +e  l+++  ++  ++sgG+r+r+ la++++a+P  l LDEP + +D++  ++++d +++ ++++  +l+ th  +   +ladr+ +++ G+++ e+t eeLK+r ++e v+
  MMETSP1061-20121228|41987_1 438 LNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAatsapltsitdLERPDQVR-LLQLVPQAPALFNT-TILENVRYSrpdASEADVRKAMDSAHC-EFVSKLEggLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKTL-ELADRILVLKDGRVAEEGTLEELKKRKDGELVS 662
                  589*************************************9999888862222222222234567887.699*******9875.788888775322555666665555555.5555554459********************************************************************98876.59************************9999887 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   94.6   0.0   2.2e-29   1.5e-27      15     224 ..     440     657 ..     428     666 .. 0.82

  Alignments for each domain:
  == domain 1    score: 94.6 bits;  conditional E-value: 2.2e-29
    TIGR02142  15 dvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsr.....kkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkraraee.rriseek....vielL.giehLleRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlaskd 224
                  d++++l+  +v+al G+ GsGk++   ++aG+  p++g ++l +   + s+       +  p + R +  v q   LF   ++ en+rY + +a+ ++ r++ + +    v +l  g+   + R+  k+sGG +qR++++RA L++P  L++DeP +++D +  + +   +   +++ +  +l + H  +  + ladr++vl+dGrv+ +g+lee+ ++kd
  MMETSP1061-20121228|41987_1 440 DLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSApltsiTDLERPDQVRLLQLVPQAPALFN-TTILENVRYSRPDASEADvRKAMDSAhcefVSKLEgGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSS-NRGLLVITHRAKT-LELADRILVLKDGRVAEEGTLEELKKRKD 657
                  678889888*********************************8876665542211156677888899***********7.6899******9877654414444333111144443468899******************************************99998888877655.668999***9876.579*********************99987 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   92.9   0.0   7.3e-29   4.9e-27       4     229 ..     419     659 ..     416     664 .. 0.78

  Alignments for each domain:
  == domain 1    score: 92.9 bits;  conditional E-value: 7.3e-29
    TIGR03265   4 ylsieeiekefe...aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrd.........itrl..ppqkrdyGivfqsYaLfPnltvaeniayGLknkk...lkreevaerveelLelv.glsgseekyPgqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeqPatk 229
                  +ls+ee++ +++   + ++l+d+s+s+++ge+v+l+G  G Gk+t   i+aG+  +++G + l + d         it+l  p q r   +v q+ aLf n t+ en+ y   +     + ++  +++ e + +l  gl  +  +   ++sGGq+qr+ Lara+   P +L+LDeP s++Da   ++L+  + + +   +   +++th     l laDri v+++g++   gt ee+ ++ + +
  MMETSP1061-20121228|41987_1 419 KLSVEEVNFSYKanpSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDaatsapltsITDLerPDQVRLLQLVPQAPALF-NTTILENVRYSRPDASeadVRKAMDSAHCEFVSKLEgGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRS-SNRGLLVITHR-AKTLELADRILVLKDGRVAEEGTLEELKKRKDGE 659
                  6777887776664346789*****************************************99988772222222223332336688999**********.89********97554300022233333333333332368888888899******************************************9988754.45566777885.679**********************998876655 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   89.0   0.0     1e-27   6.9e-26       3     220 ..     421     644 ..     419     645 .. 0.81

  Alignments for each domain:
  == domain 1    score: 89.0 bits;  conditional E-value: 1e-27
    TIGR02211   3 kcenltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkels.klssneraklrn....kklGfiyqfhhlladftalenvamPl.liskkskkeakera.kellekv..glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgkla 220
                  ++e+++ syk +     vl+++s+++++ge+va+vG+ GsGkst   +l+g+  p sG v l   +   +   +++++l      + l ++ q    l + t+lenv       s+ ++++a + a  e+++k+  gl   + ++  ++sGG+rqr+ +ara++ +P  ++ deP + +d++   ++ + +   + ++n +llv+th  +  + +dr l lkdg++a
  MMETSP1061-20121228|41987_1 421 SVEEVNFSYKANPS-KAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAAtSAPLTSITDLERpdqvRLLQLVPQAPA-LFNTTILENVRYSRpDASEADVRKAMDSAhCEFVSKLegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACR-SSNRGLLVITHRAKTLELADRILVLKDGRVA 644
                  67788888987765.57*******************************************997765441344455566643111144666777665.5678******8754135566666665555168999884458999999**********************************************99875.57889***********************986 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   1.7e-27   1.1e-25      20     236 ..     431     650 ..     414     663 .. 0.87

  Alignments for each domain:
  == domain 1    score: 88.4 bits;  conditional E-value: 1.7e-27
    TIGR02769  20 kkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsf......rGqdlakldrkqrkafrrdvqlvfqdsisavnprksvreiigePlrhltsldeserkariaellelvelrsevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlrlvqkfaqrvlvldeGqiveeikva 236
                  ++  kavl+++s+sl +Ge val+G+ G+Gkst a +l G+  P++G vs          +l+ +   +r    r +qlv q +++ +n+    +   + P     ++ ++   a+ + + +l +    ++ +   ++sGGq qri +ara+ ++P ++vlde  s++d    as+ + + + +  +    l+ith  +   ++a+r+lvl++G++ ee +  
  MMETSP1061-20121228|41987_1 431 ANPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLydsdaaTSAPLTSITDLERPDQVRLLQLVPQ-APALFNTTILENVRYSRPDASEADVRKAMDSAHCEFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRS-SNRGLLVITHRAKTL-ELADRILVLKDGRVAEEGTLE 650
                  667899*******************************************9722222234578888888888899999**988.799999988888888999999999***999999998888888888999*******************************************99999988876.56789******9986.59*************997654 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.1   0.0   3.6e-27   2.4e-25       2     232 ..     420     654 ..     419     662 .. 0.80

  Alignments for each domain:
  == domain 1    score: 87.1 bits;  conditional E-value: 3.6e-27
    TIGR00972   2 levknlklfyge...kealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkk..ldvvel.....rkkvGmvfqkpnpfpmsiydnvayg.lrlkgikdkkeldeiveesLkkaalwdevkdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk.ytivivthnmqqaarvsdktaffleGelveegeteqife 232
                  l+v++++++y     k +l+d+++++++ +v+al+G+ G+Gkst    l  +         +G v l ++d   +   ++++ l      + + +v q p  f+ +i++nv y+ + +++   +k++d++  e ++k  l   +   + ++++++sGGq+qr+ +ara   +P  l+lDeP+s++D++  +++++ ++  +++   ++++th  +++ +++d++ ++ +G++ eeg+ e++ +
  MMETSP1061-20121228|41987_1 420 LSVEEVNFSYKAnpsKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQ-----SGGVSLYDSDAATSAplTSITDLerpdqVRLLQLVPQAPALFNTTILENVRYSrPDASEADVRKAMDSAHCEFVSK--LEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSnRGLLVITHR-AKTLELADRILVLKDGRVAEEGTLEELKK 654
                  5678888888751225799*******************************998766.....44444444443322111222222100003457899******************88899999999999988777665..44556678899*************************************************99873677888887.67899*****************9998755 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.0   0.0     4e-27   2.7e-25       1     223 [.     420     656 ..     420     663 .. 0.80

  Alignments for each domain:
  == domain 1    score: 87.0 bits;  conditional E-value: 4e-27
    TIGR03410   1 levenlevaYge...sevlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervk........aGiayvpqGreifpkltveenlelglealkkk......ekkipeeiyelFPvlkemlkRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevvaegekeeldeek 223
                  l+ve+++ +Y +     vl+d+s+++++gevva++G+ng Gk+t    l g+++ +sG ++l ++d  +++p + ++        + +  vpq   +f + t+ en++ +   ++++      +++  e + +l   l     R+g ++sGGq+q + +aRa +++P +l+LDeP+  +     + +++++ + ++++  ++l++  +   +leladr+lvl+ G+v +eg+ eel+++k
  MMETSP1061-20121228|41987_1 420 LSVEEVNFSYKAnpsKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSAPLTSITdlerpdqvRLLQLVPQAPALFNT-TILENVRYSRPDASEAdvrkamDSAHCEFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNR-GLLVIT-HRAKTLELADRILVLKDGRVAEEGTLEELKKRK 656
                  678999999986222479********************************************999887777765543222222224699******99975.9******98766555443112233333445555566778999*************************************************9998754.544444.4455899********************999876 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   85.8   0.0     1e-26   6.8e-25       5     220 ..     434     655 ..     430     664 .. 0.78

  Alignments for each domain:
  == domain 1    score: 85.8 bits;  conditional E-value: 1e-26
    TIGR01186   5 lklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGki.lidGediaeisdaelrevrr....kkiamviqkialfPhmtildnislgl.ellkideqerkekal.ealklv..dleeyedryPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrn 220
                  +k  +nd+++++  Ge++ ++G  GsGkst+  +l  +  P +G + l d +  +    + + ++ r    + + +v q  alf   til+n+ ++  +  + d ++  + a  e + ++  +l   + r   ++sGG++qr+Glara+ a+P  l++de+ s++d     +l+d +   +   ++ ++ ith    +l l+dri +lk+G +   Gt +e+ + 
  MMETSP1061-20121228|41987_1 434 SKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVsLYDSDAATSAPLTSITDLERpdqvRLLQLVPQAPALF-NTTILENVRYSRpDASEADVRKAMDSAHcEFVSKLegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACR-SSNRGLLVITHRA-KTLELADRILVLKDGRVAEEGTLEELKKR 655
                  566679*************************************99934577777666556666666522225677788888888.58********861444444444444443233333311334446788899******************************************99875.678999*****85.79*********************998765 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.0   1.7e-26   1.2e-24       8     205 ..     432     637 ..     422     638 .. 0.82

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 1.7e-26
    TIGR03608   8 fkdkeilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekak.lkskkaskllrek....lgylFqnfaLlenetveenlelal..klkkkskkekekkkkevlekv..glekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaekadrvie 205
                    +k++l++ls+++++Ge+va+vG+ GsGKst   il+ +  ++sg v l ++++a+    ++ ++l r +    l  + q  aL  n t+ en++ +   + +   +k ++++  e + k+  gl+ +  ++  ++sgG++qR+ lar+ l ++  ++ DEP +s+D++ ++ + + +   +++++ ++++tH ++  e adr++ 
  MMETSP1061-20121228|41987_1 432 NPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATsAPLTSITDLERPDqvrlLQLVPQAPALF-NTTILENVRYSRpdASEADVRKAMDSAHCEFVSKLegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKTLELADRILV 637
                  45789*****************************************9999888765412334455566654111144555666666.689*****98761134445566777888889988855799*****************************************************************************986 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.1   0.0   1.3e-25   8.9e-24      11     221 ..     433     655 ..     421     665 .. 0.78

  Alignments for each domain:
  == domain 1    score: 82.1 bits;  conditional E-value: 1.3e-25
    TIGR00968  11 GdfqalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkv...........rdreiGfvfqhyalfkhltvrdniafGl......eirkkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyde 221
                   +  +l+d+++++  G++val+G  GsGkst   ++aG+  p+sG + l   d++               + r + +v q  alf+  t+ +n+ +        ++rk    +  + v++l    +l     r   ++sGGqrqr+ lara+  +p  l+ldep +++da+    l+  +       +   ++v   ++++le+adri vl++G++ + g+ ee+ ++
  MMETSP1061-20121228|41987_1 433 PSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSAPltsitdlerpdQVRLLQLVPQAPALFN-TTILENVRYSRpdaseaDVRKAMDSAHCEFVSKLEG--GLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNR--GLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKKR 655
                  46789********************************************9999864321111122222225688999********7.699****98751111114445544444445554433..46666789999*****************************************99998876544..45555557899*******************99998776 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.0   0.1   2.3e-24   1.6e-22       4     209 ..     423     645 ..     420     648 .. 0.76

  Alignments for each domain:
  == domain 1    score: 78.0 bits;  conditional E-value: 2.3e-24
    TIGR01277   4 ddviyeykhlple.....fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsapy......erp.....vsmlfqennlfahltvrqniglGlkpglk...lnavqkekvedvar.qvGiadylerlpeelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaaaiasqvvvvedGkikv 209
                  ++v + yk  p +     +++s+++Ge va++G+ G+Gkst  +++aG+  p sG + + d d  +sap       erp     + ++ q   lf+  t+ +n+      +      +a++  + e v++ + G+   + r   ++sGGqrqr+ lar ++ +   l+ldep s++d       l      +   ++ ll++th+ +   + a++++v++dG+++ 
  MMETSP1061-20121228|41987_1 423 EEVNFSYKANPSKavlndLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSAPLtsitdlERPdqvrlLQLVPQAPALFN-TTILENVRYSRPDASEadvRKAMDSAHCEFVSKlEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEAS-LKDAMAACRSSNRGLLVITHRAKT-LELADRILVLKDGRVAE 645
                  666677766664311111566789*******************************************99533333368744222344557788886.6999***987433332111356666666666652457888899*********************9988899*********986554.5566678999**********9876.579***********986 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.0   0.0         6   4.1e+02     208     224 ..     244     260 ..     237     274 .. 0.80
   2 !   77.6   0.0   3.1e-24   2.1e-22       2     235 ..     420     654 ..     419     660 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.0 bits;  conditional E-value: 6
    TIGR02315 208 lakkyadrivglkagei 224
                  l++ky ++iv++++ + 
  MMETSP1061-20121228|41987_1 244 LTRKYLKKIVAIQQQAA 260
                  6799*******998765 PP

  == domain 2    score: 77.6 bits;  conditional E-value: 3.1e-24
    TIGR02315   2 levenlskvypng..kqalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklk.kkelrklrk.....kigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkageivfdgasseldd 235
                  l ve+++ +y+ +  k++l+++++++++Ge+va++G+ G+Gkst    + ++  ++sg + l++++ ++     ++  l +      + ++ q    + ++t+lenv  +r  a+++    ++   ++ + + ++ Le  gl  +  +   ++sGGq+qR+++aRa++ +p  ++ DEP +s+D +    + d++   ++ ++   +v  H+ + + + adri+ lk+g++  +g+ +el++
  MMETSP1061-20121228|41987_1 420 LSVEEVNFSYKANpsKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSApLTSITDLERpdqvrLLQLVPQAP-ALFNTTILENVRYSRPDASEA---DVRKAMDSAHCEFVSKLEG-GLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAM-AACRSSNRGLLVITHRAK-TLELADRILVLKDGRVAEEGTLEELKK 654
                  678888888865433899******************************************99999877655444444433211110344555554.455789999998888665543...2333344455556666664.89999999999*********************************99877776666.568888888888889977.5789************99999998876 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0   8.2e-25   5.5e-23      12     223 ..     433     651 ..     419     657 .. 0.82

  Alignments for each domain:
  == domain 1    score: 79.3 bits;  conditional E-value: 8.2e-25
    TIGR03873  12 ggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagad.........lkalsrrararrvalveqdsdaevplsvrdvvalGriPhrslfaadsdedaevvdralarv..elssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppae 223
                   ++ +++d+  +   G++ +l+G nGsGkst  ++laG+  p+ G v+l  +d         ++ l+r  + r + lv q + a  + ++ + v   r P  s      + d++  +  +++   +l     r+   +sGG+rqr+ lara+  +P +l+ldeP   +d +   +l  ++    +++   +v  h  + + +++d+++vl+ Grv+  G+ +e
  MMETSP1061-20121228|41987_1 433 PSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDaatsapltsITDLERPDQVRLLQLVPQ-APALFNTTILENVRYSR-PDASEADVRKAMDSAHCE-FVSKLegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHR-AKTLELADRILVLKDGRVAEEGTLEE 651
                  46899******************************************999988889999555555555555666666665.6788999********99.778877777777776655.44443115778889**************************************99998888888887777777777776.678899**************999776 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.3   0.0   7.9e-24   5.3e-22      12     190 ..     434     629 ..     420     638 .. 0.74

  Alignments for each domain:
  == domain 1    score: 76.3 bits;  conditional E-value: 7.9e-24
    TIGR01189  12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrd..........elaeellylgHldglKaeLsalEnLkfyaallqseqktveealekv..........gLsgledlpvaqLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllathqdlgl 190
                   +++l++lsf+l+ Ge+++++G+nG+GK+t   ilaG+ +p+sG v+l d++ a++++           + + l+ +  +++l +  ++lEn+++ + + ++++    +a++++          gL  +  +   ++s Gq++R++lar +l++    +LDEP  ++D+eg + l++++aa  + +   l+ th +  l
  MMETSP1061-20121228|41987_1 434 SKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSAPltsitdlerpDQVRLLQLVPQAPALFN-TTILENVRYSRPDASEADV--RKAMDSAhcefvsklegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKTL 629
                  5789********************************************9988776543111111110023344555666677755.599********99997663..33333320111121122455555666679********************************************9888777777777876655 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.4   0.0   6.5e-09   4.3e-07       2      39 ..     438     475 ..     437     514 .. 0.89
   2 !   48.4   0.0   2.4e-15   1.6e-13     125     214 ..     566     653 ..     551     664 .. 0.91

  Alignments for each domain:
  == domain 1    score: 27.4 bits;  conditional E-value: 6.5e-09
    TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglldke 39 
                   +d+++sl rg+v+alvG+ GsGks+ta+ + g+ +++
  MMETSP1061-20121228|41987_1 438 LNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQ 475
                  579**************************999999875 PP

  == domain 2    score: 48.4 bits;  conditional E-value: 2.4e-15
    TIGR02770 125 elsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelf 214
                  ++sGG  qR+ +a a l+++ +l+ DeP++ +D+  +a + + +   r+ ++ g+l+ith  + + elad ++v+++G++ e+gt++el 
  MMETSP1061-20121228|41987_1 566 KMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRS-SNRGLLVITHRAKTL-ELADRILVLKDGRVAEEGTLEELK 653
                  8***********************************9998888777765.678*******99987.8******************99875 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.0   4.5e-24   3.1e-22       6     186 ..     436     625 ..     430     629 .. 0.79

  Alignments for each domain:
  == domain 1    score: 76.8 bits;  conditional E-value: 4.5e-24
    TIGR01166   6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysr..kgllelrk..kv...alvlqdpddqlfaadvdedvafgplnlGlseaeverrvrea....laav..disgleerpthllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklreeGktvvisthd 186
                   vl++l+++++rgev+al+G+nG+Gkst  + l+G+  P+sG v l  ++ + s    ++++l +  +v   +lv q p   lf +++ e+v ++  +   sea+v++ ++ a    ++++  ++     r   ++sgG+++r+ +a a   +p +l+ldeP++++d++G+  l +++   r + + +++ th 
  MMETSP1061-20121228|41987_1 436 AVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSAplTSITDLERpdQVrllQLVPQAP--ALFNTTILENVRYSRPD--ASEADVRKAMDSAhcefVSKLegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHR 625
                  69******************************************98666555443225555543311451114444444..7************9876..78999999999883222333421233345688899***************************************************99999996 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.8   0.0   8.7e-24   5.8e-22    1069    1508 ..     189     654 ..     172     666 .. 0.68

  Alignments for each domain:
  == domain 1    score: 74.8 bits;  conditional E-value: 8.7e-24
    TIGR00957 1069 skeldvvdsvlaevikmllgslfnvigavivillatp.l..aaviilplallyflvqrfyvassrqlkrlesv.srspvyshfnetllgvsvi....rafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfavisrsslsaglvglsvsyslqvtaylnwlvrmsseletnivaverlkeyseteke.........apwqieetappsswp.......ksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiii...dg......lniakiglhdlrfkltiipqdpvlfsgslrmnldp.fsqysdeevwlalelahlkdfvsalpdkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliq.stirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellq 1508
                     ++dvv + +++ +  ll s  + i     +l   p l  +++ + p+     l+ r y      +++  ++ s     s  +e l  ++++    r  +e e++ +  d  v    ka   s ++   +  +l     c +l+a   av + +  s  l     +ys+ ++     +vr +se    + +  rl    + + +         +p    e    ss p       ++  ve  n+s +  +    vl+dl+ ++  ge v +vg+ g+gks+ +  l  +     g + +   d         i+++   d    l ++pq p lf  ++  n+     + s+ +v  a++ ah  +fvs l  +l +     g ++s gqrq + lara+l +   lvlde ++++d e +  ++ +    +  +  +l i+hr +t+    r+lvl  g vae ++  el +
  MMETSP1061-20121228|41987_1  189 KDDVDVVANTVTNTLANLLRSSSSCIFGTYNMLRINPqLvgFSIAVAPVVGTLALLTRKYLKKIVAIQQQAAIqSA----SFVEERLHHIAMVktsnRERDEVENYNKLQDECVSLGGKAALASGLSMG-VMFGLSSTAFCGILLAGRRAVKAEKMTSGQL-TSFGTYSFMLALGSAGVVRAMSEYSNGMQCAARLYRLIDGDSDgdgdgdddnTPQSS-ERDSASSSPsldtdvvQKLSVEEVNFSYKANP-SKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLydsDAatsaplTSITDLERPDQVRLLQLVPQAPALFNTTILENVRYsRPDASEADVRKAMDSAHC-EFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKdAMAACRSSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKK 654 
                   5677888888888777777777776655544444444132245666666555556666665555444444443123....3344445555555000044455556777777777777888887777754.4578888889999999999988766555555.445679999999999999999999888888888766544333200001111133333.32233333311111112334455555544444.4689*************************99999999999988888763223311111122334444444456889************9999741457899***********7.7*****************************************************997665155667888999***************************999888765 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   3.1e-11   2.1e-09      10      69 ..     430     489 ..     419     501 .. 0.85
   2 !   38.1   0.0   3.9e-12   2.6e-10     133     226 ..     566     659 ..     533     666 .. 0.89

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 3.1e-11
    TIGR03522  10 klygkqkaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlkn 69 
                  k   ++ +l+++sf+  +Ge+v ++G nG+Gkst+  il+g  +++sG v + ++d+ ++
  MMETSP1061-20121228|41987_1 430 KANPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATS 489
                  444567899********************************************9998776 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 3.9e-12
    TIGR03522 133 alskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikei.akdktvilsthimqevealcdrviiinkGkivadkkleelkaaekkk 226
                  ++s G rqr+Gla+a+l +P  l+ldeP++ +d +    +++ ++   + ++ +++ th  + +e l dr+++++ G++  + +leelk+ ++ +
  MMETSP1061-20121228|41987_1 566 KMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACrSSNRGLLVITHRAKTLE-LADRILVLKDGRVAEEGTLEELKKRKDGE 659
                  6899*************************************98887626789999****999887.89********************9887655 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.3   0.2   1.1e-22   7.1e-21      12     222 ..     430     652 ..     418     662 .. 0.76

  Alignments for each domain:
  == domain 1    score: 72.3 bits;  conditional E-value: 1.1e-22
    TIGR01288  12 ksygdkvvvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlara.k.........igvvpqfdnldreftvrenllvfgryfglst..reieevips.llef.arleskadvrva....dlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktilltthlmeeaerlcdrlcvleagrkiaegrpdal 222
                  k+   k v+ndlsf++++ge+  l+g ng+gkst a ++ g+ +p+ g +++ +++  + a l+             + +vpq  +l  + t+ en+    ry + ++   ++ +++ s   ef ++le      v     ++sgg ++r+ lara++ +p +l+ldep++ +d      + + + +  +  + +l+ th  +    l dr+ vl+ gr   eg  + l
  MMETSP1061-20121228|41987_1 430 KANPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSAPLTSItDlerpdqvrlLQLVPQAPALF-NTTILENV----RYSRPDAseADVRKAMDSaHCEFvSKLEGGLYYTVGrngiKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKTL-ELADRILVLKDGRVAEEGTLEEL 652
                  666789***********************************************99887777654321211111111234556655553.34556664....555544400445566655157884589987766664223379*********************************************************98766.59***********9999987766 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.1   0.0   1.7e-22   1.1e-20       4     215 ..     422     642 ..     419     643 .. 0.83

  Alignments for each domain:
  == domain 1    score: 72.1 bits;  conditional E-value: 1.7e-22
    TIGR00960   4 feqvskaykgaaela.ldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqd......ltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalriiG.vkgreieervs.aalekv..GlkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskrkrvltlskGk 215
                  +e+v  +yk+    a l+++++++++Ge+v lvG+ G+Gkst   ++ g+  p++G + + + d      lt + d e p   r + +v q   l  + t+++nv  +   +  +  r++ + ++ + + k+  Gl     +  +++sgG++qr+++ara++ +P  l+ deP++ +d e    + + +   +     +lv th  + +e    r+l+l++G+
  MMETSP1061-20121228|41987_1 422 VEEVNFSYKANPSKAvLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDaatsapLTSITDLERPDQVRLLQLVPQAPAL-FNTTILENVRYSRPDASeADVRKAMDSAHcEFVSKLegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKTLE-LADRILVLKDGR 642
                  68899999998655439*****************************************9865442222228889999999999999999998765.678******998654431334444433331334443449999******************************************************999999******999987.5789******98 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.1   0.0   2.4e-21   1.6e-19      12     230 ..     434     650 ..     420     658 .. 0.74

  Alignments for each domain:
  == domain 1    score: 68.1 bits;  conditional E-value: 2.4e-21
    TIGR01978  12 dkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqd......lleleveeraraGlflafqapeeipGvsnkeflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGrivksGdve 230
                   k +L++l+ ++++Gev+a++G+nGsGkst +++lag      +sG ++l ++d      l++++  er        +q   + p + n+++l ++  ++ +a + +  +++   +   e +++le    ++        sGG ++r  + +  l +P + +LDe  s +D ++   + + +  +r+++++ll+ith  + lel   d + vl dGr++++G +e
  MMETSP1061-20121228|41987_1 434 SKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYP--PQSGGVSLYDSDaatsapLTSITDLERPD--QVRLLQLVPQAPALFNTTILENVRYSRPDASEADVRKAM--DSAHCEFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKTLEL--ADRILVLKDGRVAEEGTLE 650
                  489**********************************755..55777777666522222233333344443..344456667777777777777766666543333322222..22223444445544455544445679**************************************************************97..69**************976 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.0   0.0   2.9e-22     2e-20       1     190 [.     453     654 ..     453     664 .. 0.77

  Alignments for each domain:
  == domain 1    score: 71.0 bits;  conditional E-value: 2.9e-22
    TIGR01187   1 lLGpsGsGkttlLrllaGleeldsGkilldged.........vt..evpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaeikervkeaLelvq.....leefakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiye 190
                  l+G  GsGk+t   +laG+  ++sG + l + d         +t  e+p + r +++v q+ aLf   t+ env ++ + +  +++ +k+   +  e v      l  +  r+ +++sGGqrqr+ lara   +P  L+lDep s++D +    ++  + a +      ++++th     l ++dri vl++G++a  g+ ee+ +
  MMETSP1061-20121228|41987_1 453 LVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDaatsapltsITdlERPDQVRLLQLVPQAPALFN-TTILENVRYS-RPDASEADVRKAMDSAHCEFVSkleggLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSS-NRGLLVITHR-AKTLELADRILVLKDGRVAEEGTLEELKK 654
                  6899************************9887622222211133334678899************6.79*******8.445555555555555555555321122445678999***********************************9998888888776543.3445667995.679********************999866 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   7.2e-22   4.9e-20       4     213 ..     422     641 ..     420     642 .. 0.75

  Alignments for each domain:
  == domain 1    score: 70.0 bits;  conditional E-value: 7.2e-22
    TIGR02673   4 lekvskeya..agveaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvar.lrerelpllRr.....kigvvfqDfkllkdrtvlenvalalevrgkkeeeiqkrveevlelv..........gledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdeelvervkkrvlelekg 213
                  +e+v+++y+   + ++L+d+s+++++ge++ l+G+ G+Gk+t   +l g+  p++G v++  +d a+     +++ l r      + +v q   l  + t+lenv  +      + ++ +  v+++++            gl   +  +  ++sgG +qR+++aRa + +P  l+ DeP   +D+e ++++ d + ++ ++   ++v th  + +e  + r+l l++g
  MMETSP1061-20121228|41987_1 422 VEEVNFSYKanPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATsAPLTSITDLERpdqvrLLQLVPQAPAL-FNTTILENVRYS------RPDASEADVRKAMDSAhcefvsklegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKTLEL-ADRILVLKDG 641
                  6789999983345689********************************************98876551455667777661111045555555443.456777777554......333333333333322111111111337888899999************************************************************9998865.5678888877 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       9.1   6.1e+02      10      50 ..     294     334 ..     289     355 .. 0.73
   2 !   69.2   0.0   1.2e-21   8.1e-20       1     203 [.     438     653 ..     438     666 .. 0.78

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 9.1
    TIGR01184  10 kgefislighsgcgkstllnliaglekptsgavilegkeit 50 
                  + e +sl g++       + ++ gl+  +  ++ l g++  
  MMETSP1061-20121228|41987_1 294 QDECVSLGGKAALASGLSMGVMFGLSSTAFCGILLAGRRAV 334
                  56778888888877777788999999999999999998754 PP

  == domain 2    score: 69.2 bits;  conditional E-value: 1.2e-21
    TIGR01184   1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgp.......drmvvfqnysllpwltvren..ialavdavlrdlskserreive.ehielv.....glreaadkrpeqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaakigeilevp 203
                  l+d+++++++ge ++l+g+ g gkst   ++ag+  p sg+v+l   +     p       +r    +   l+p   +  n  i   v   ++d+s+++ r+ ++  h e+v     gl  +  ++  ++sgg +qr+ +ara+   p  l+ldep  ++da    +l++  +  ++ ++   l++th   ++l l+dr+++l +g  a+ g + e++
  MMETSP1061-20121228|41987_1 438 LNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSAPltsitdlERPDQVRLLQLVPQAPALFNttILENVRYSRPDASEADVRKAMDsAHCEFVsklegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDA-MAACRSSNRGLLVITHRA-KTLELADRILVLKDGRVAEEGTLEELK 653
                  6789999*************************************887765555422222222333334445666655544411444677778888887766666525788874444457788999999****************************************986.67889999999*****86.6899*************9999887765 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   0.1       5.5   3.7e+02      23      78 ..     309     368 ..     303     380 .. 0.66
   2 !   67.1   0.0   3.7e-21   2.5e-19     333     550 ..     416     646 ..     394     649 .. 0.81

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 5.5
    TIGR01194  23 slllGlisGlaiil...llavinqalheetflrqvllsfvGls.llallsrivadlftay 78 
                   l +G++ Gl++++   +l +  +a++ e++    l sf+  s +lal s  v   ++ y
  MMETSP1061-20121228|41987_1 309 GLSMGVMFGLSSTAfcgILLAGRRAVKAEKMTSGQLTSFGTYSfMLALGSAGVVRAMSEY 368
                  566777777777772223444578999999999999999999834566666555555555 PP

  == domain 2    score: 67.1 bits;  conditional E-value: 3.7e-21
    TIGR01194 333 svdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGelll.dGea........vsdesrddyrdlfsavfadyylfddlvqpd...ekkqasldqattylsrleledkvkvedlnystt....tdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddryfeladrlikladGkvvke 550
                   v+ l + +v++syk+  s     l  + + +++Ge+v +vG+nG Gkst + +l G+y pq+G + l d +a        ++d  r d   l+  v     lf+  +  +    + +as  + ++ ++    e   k+e++ y t      ++s Gqr+r+ l  a+l +   l+lde ++  d      + ++ +   +   + +lvi+h  + +eladr++ l dG+v +e
  MMETSP1061-20121228|41987_1 416 VVQKLSVEEVNFSYKANPSK--AVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLyDSDAatsapltsITDLERPDQVRLLQLVPQAPALFNTTILENvrySRPDASEADVRKAMDSAHCEFVSKLEGGLYYTVgrngIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASL-KDAMAACRSSNRGLLVITHRAKTLELADRILVLKDGRVAEE 646
                  57789999******997654..468999************************************996535543122222225677899*****************9987541113445677777888888999999999999998752222589****************99999**********9877665.67788899999**************************9876 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.1   0.0   2.2e-20   1.5e-18       8     209 ..     430     650 ..     420     666 .. 0.75

  Alignments for each domain:
  == domain 1    score: 65.1 bits;  conditional E-value: 2.2e-20
    TIGR03740   8 kkfkkqavvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeill.dgrewtrkdlkkiG...........sli.esPalyenltarenlkvr......tlllglpesrieevlkiv..dlentekkkakqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelreliksfpekGitvilsshilsevelladhiGiiseGklkyekkid 209
                  k+   +av+n++s+++ + +v +l+G nG+Gkst+  +l+G+  ++sG + l d+   t   l++i             l+ ++Pal+ n t  en++        + +++  +s   e ++++  +l  t  ++  ++s G +qr+G+a a+l +P +l+ldeP+  +d  G   l++ + + ++    +++ +h      +lad i ++++G++  e+ ++
  MMETSP1061-20121228|41987_1 430 KANPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLyDSDAATSAPLTSITdlerpdqvrllQLVpQAPALF-NTTILENVRYSrpdaseADVRKAMDSAHCEFVSKLegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKT-LELADRILVLKDGRVAEEGTLE 650
                  3334689*****************************************9976255555555555554111111111114552455655.67999999864222111444444455555555554225899999***************************************************9999999999997655.569***********99887655 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.6   0.0     8e-21   5.4e-19       3     232 ..     420     655 ..     418     662 .. 0.79

  Alignments for each domain:
  == domain 1    score: 66.6 bits;  conditional E-value: 8e-21
    TIGR03411   3 Levedvsvsfdgf..ka.lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgk.dltklkeaeiarl...GigRkf....qkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkel.akersvvvvehDmefvrelaekvtvlheGkvlaeGsldevqad 232
                  L+ve+v+ s+ +   ka lndls+s+++ge+ +++G nG+Gk+t   +++G   p++G v + ++   t+ + ++i+ l      R      q+p++f + t+len++ +  +     a +++ +++++ e ++++    gL  ++ ++  ++s Gq+q++ ++  ++ +p +l+lDeP + m +e +++  + + +  +++r ++v+ h  + + ela+++ vl++G+v  eG+l+e+++ 
  MMETSP1061-20121228|41987_1 420 LSVEEVNFSYKANpsKAvLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSdAATSAPLTSITDLerpDQVRLLqlvpQAPALF-NTTILENVRYSRPDAS--EADVRKAMDSAHCEFVSKLE--GGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACrSSNRGLLVITHRAKTL-ELADRILVLKDGRVAEEGTLEELKKR 655
                  67777777776532244279******************************************999445666666666541114455552222567777.5799999987765544..45566666777766666653..4789999999**********************************999888888877776256899******99977.699*******************9875 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   0.0     9e-08     6e-06    1217    1265 ..     419     468 ..     341     480 .. 0.80
   2 !   41.1   0.0   1.3e-13   8.6e-12     537     639 ..     555     657 ..     506     666 .. 0.84

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 9e-08
    TIGR01271 1217 qmtvkdltakyt.eagravlqdlsfsveagqrvgllgrtgsgkstllsal 1265
                   +++v+++   y  +  +avl+dlsfs++ g+ v l+g+ gsgkst  s l
  MMETSP1061-20121228|41987_1  419 KLSVEEVNFSYKaNPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASIL 468 
                   67788888888614589****************************98876 PP

  == domain 2    score: 41.1 bits;  conditional E-value: 1.3e-13
    TIGR01271 537 kdktvlgeggitlsggqrarislaravykdadlylldspfsyldvvtekeifesclckllanktrilvtsklehlkkadkilllhegscyfygtfselqakkp 639
                      ++g  gi +sggqr ri+lara   +  + +ld p s +d   e  + ++      +n+  +++t + + l  ad+il+l++g     gt+ el+++k 
  MMETSP1061-20121228|41987_1 555 GLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLEELKKRKD 657
                  555677899****************************************999998877899*************************************98874 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.3   0.0   3.1e-20   2.1e-18      14     237 ..     436     655 ..     424     665 .. 0.79

  Alignments for each domain:
  == domain 1    score: 64.3 bits;  conditional E-value: 3.1e-20
    TIGR03005  14 tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikv.egeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvtea.pvlvkG.varaeaekravelldmv..GladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237
                   vl++l++++++Ge val+G  GsGkst   il  + + + G + + +++  +  +    ++  +d     +vr  + +v q   lf   t+l+nv  + p      v++a  ++   e++  +  Gl         ++sGGq+qr+ +ara+  +p  l++de++s++d e     l+     +   +  +l++th+ + + e+adr+l ++ G+++eeG  +e+ ++
  MMETSP1061-20121228|41987_1 436 AVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLyDSDAATSAP--LTSI--TDLERPDQVR-LLQLVPQAPALFN-TTILENVRYSrPDASEAdVRKA-MDSAHCEFVSKLegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGE-ASLKDAMAACRSSNRGLLVITHRAK-TLELADRILVLKDGRVAEEGTLEELKKR 655
                  69***********************************9999999882444444433..3344..4555556666.4789999999996.7999**9876243333313333.333334555433339999*****************************************965.556666677999999*******987.679******************9998665 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       6.3   4.2e+02     129     174 ..      77     123 ..      33     164 .. 0.56
   2 ?    0.6   0.1      0.47        32     201     311 ..     188     292 ..     182     302 .. 0.71
   3 !   60.8   0.0   2.8e-19   1.9e-17     465     642 ..     434     628 ..     383     642 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 6.3
    TIGR00954 129 rsprsFakellkwlliavpaslvns.likylekelalsfrerltkyl 174
                   s+r+F  ++l   l++ +as+v + l++ ++  +a ++r+++ + l
  MMETSP1061-20121228|41987_1  77 TSERKFILQILWLSLVGGTASFVRTwLLNRAQDSIAARLRKEVFESL 123
                  45555666555555555566666542334444555555555444433 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.47
    TIGR00954 201 ltkDvekFcdsvvelysnlaKPllDlilysfkLlt.algsvgaagllalvlllsgvvLrklrpplgkltveeaalegeyrylhsrlisnsEEiAfyqGnkvEkekvkesfek 311
                  l +Dv+  +++v++ ++nl++     i+  +++l+ + + vg ++++a v+   +++ rk+ +++  +  + a + +    ++ rl+     iA+ +  ++E+++v++ ++k
  MMETSP1061-20121228|41987_1 188 LKDDVDVVANTVTNTLANLLRSSSSCIFGTYNMLRiNPQLVGFSIAVAPVVGTLALLTRKYLKKIVAIQQQAAIQSAS--FVEERLH----HIAMVKTSNRERDEVEN-YNK 292
                  6789************************99987761556677777777655555555566777766555444444444..4666776....48888888888888754.555 PP

  == domain 3    score: 60.8 bits;  conditional E-value: 2.8e-19
    TIGR00954 465 gdvlieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg...................glltkpeegklF.yvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg.wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdkl...yelakevgitllsvshrksL 642
                   + ++++Lsf +  G+ + ++G nG GKs    il++++P  +                     l  p + +l   vPq P + + t+ + + Y        + + s++d+ + ++  + e + + egg + +v      +sgG++qRi++AR f   P f vLDE  s +  + E  l     ++++ +  ll ++hr   
  MMETSP1061-20121228|41987_1 434 SKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSggvslydsdaatsapltsiTDLERPDQVRLLqLVPQAPALFNTTILENVRYS-------RPDASEADVRKAMDSAHCEFVSKLEGGlYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLkdaMAACRSSNRGLLVITHRAKT 628
                  35678***********************************99889**************999889999998876379***************994.......568899999999999999999999999545666666689*****************************99999987733356899***********9754 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.8   0.0   7.1e-20   4.7e-18     279     515 ..     416     652 ..     402     659 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.8 bits;  conditional E-value: 7.1e-20
    TIGR03269 279 iikvkdvskryisvdrGvvkav.dnvslevkekeifGlvGtsGaGkttlskilaGvleptsGevevrvGdewv..dmtkkgvlerGrakkyiGllhqeyalyphrtvlenlteaiglelpdelakrkavivlk..avGfdeekakeildklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeei 515
                  +++   v+   +s +    kav +++s+ + ++e+  lvG+ G+Gk+t++ ilaG+ +p sG v +   d      +t    ler    + + l+ q  al+   t+len+  +      +e  +rka+   +   v   e      + +   ++s G+r r+ la+ ++ +p  ++ldep+ +md   + ++++++  +r   ++  ++++h     le+ dr+ +++dG++ + G  ee+
  MMETSP1061-20121228|41987_1 416 VVQKLSVEEVNFSYKANPSKAVlNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATsaPLTSITDLERPDQVRLLQLVPQAPALFN-TTILENVRYSR--PDASEADVRKAMDSAHceFVSKLEGGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRS-SNRGLLVITHRAK-TLELADRILVLKDGRVAEEGTLEEL 652
                  55555555555666666667774679****************************************999976511689999999999***************7.79****98654..345677777777655411444455566777899999*****************************************99888776.58999999**976.689***************9998886 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.6   0.0   2.3e-07   1.5e-05      22      74 ..     418     471 ..     400     481 .. 0.79
   2 !   38.2   0.0   2.2e-12   1.5e-10     166     254 ..     566     652 ..     556     655 .. 0.91

  Alignments for each domain:
  == domain 1    score: 21.6 bits;  conditional E-value: 2.3e-07
    TIGR00955  22 llvkrleealarkk.pekellknvsGvaksGellAvlGsSGaGKtTLlnalafr 74 
                  +++++ e  ++ k+ p k +l++ s  +  Ge++A++G  G+GK+T  ++la  
  MMETSP1061-20121228|41987_1 418 QKLSVEEVNFSYKAnPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGM 471
                  4444555555544459******************************99999976 PP

  == domain 2    score: 38.2 bits;  conditional E-value: 2.2e-12
    TIGR00955 166 glSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeea 254
                   +SgG+r+R+ la   l +P++L++DEP s++D+   as+  ++    ++ +  ++  H   ++  el d+i++l +Grv+ +G+ ee+
  MMETSP1061-20121228|41987_1 566 KMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHR--AKTLELADRILVLKDGRVAEEGTLEEL 652
                  58*******************************************999999999999997..7899***************99998876 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0    0.0001    0.0068       2      39 ..     444     481 ..     443     493 .. 0.86
   2 !   45.5   0.0   2.2e-14   1.5e-12     113     201 ..     566     654 ..     537     660 .. 0.90

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 0.0001
    TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkv 39 
                  s+++Ge+++l+G nG+Gk+t    + g+ +++ G v +
  MMETSP1061-20121228|41987_1 444 SLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSL 481
                  789*****************999999999999998876 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 2.2e-14
    TIGR03771 113 elsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvll.ngrvvadgapdqlqd 201
                  ++sGGqrqr+ +ara+  +p  l+ldep + +d   + +l + + +  + ++ +l+ th  a++++ +dr+++l +grv  +g+ ++l++
  MMETSP1061-20121228|41987_1 566 KMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHR-AKTLELADRILVLkDGRVAEEGTLEELKK 654
                  79*********************************************************7.899******87652688888999888875 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.9   0.0   6.4e-19   4.3e-17      41     256 ..     439     656 ..     431     664 .. 0.84

  Alignments for each domain:
  == domain 1    score: 59.9 bits;  conditional E-value: 6.4e-19
    TIGR03415  41 adasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrt.krvsmvfqkfallPWrtveenvafGlelsGvakaerrkrve.eqlelv.....glaeWadkkvgelsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkP 256
                  +d s+++++Ge++ l+G  GsGks+    + g+ p   G v++ d d       ++ ++l +  + + + +v q  al+   t+ env +       ++a++rk ++ ++ e+v     gl     ++   +sGG +qr+Glaraf  +   l++deP s++d    a l+d + + ++  ++ ++ ++h     l l +ri ++++Gr+   gt ee+ ++ 
  MMETSP1061-20121228|41987_1 439 NDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSAPLTSITDLERPDQvRLLQLVPQAPALFN-TTILENVRYSRP--DASEADVRKAMDsAHCEFVsklegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRS-SNRGLLVITHR-AKTLELADRILVLKDGRVAEEGTLEELKKRK 656
                  78999******************************************999888888777766655155678888888875.89******9864..566666666554167788843333466667788889*****************************************9887765.68999999997.579********************99987665 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.2   0.0     1e-17   6.9e-16      21     214 ..     435     631 ..     421     639 .. 0.75

  Alignments for each domain:
  == domain 1    score: 56.2 bits;  conditional E-value: 1e-17
    TIGR02324  21 lpvlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsal..evvaepllelGvereearakakellarlniperL.....WslaPa..tfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhdeevrel 214
                    vl+++s++++ Ge+val Gk G+Gkst    l + Y p+sg + +  +++ +   +a    + ++ r +     + L+ +P+ +al    + e ++    +  ea ++ +   a+ +   +L     +++  +    sGG +qR+ +ara++a+   L+LdeP +s+da   +   + ++  +++   l+ i h +++ el
  MMETSP1061-20121228|41987_1 435 KAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAAT---SAPLTSITDLERPDQV---RLLQLVPQAPALfnTTILENVRYSRPDASEADVRKAMDSAHCEFVSKLegglyYTVGRNgiKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKTLEL 631
                  5799******************************************99998888...7788888888876654...456666666665322333444433333333333333333444444444222224454442268****************555688***********************************8877655 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   6.9e-19   4.7e-17     945    1148 ..     437     653 ..     373     661 .. 0.82

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 6.9e-19
    TIGR01257  945 avdrlnitfyenqitaflghngagktttlsiltgllpptsgtvlvggkdietn..ldav....r....qslgmcpqhnilfhhltvaehilfy.....aqlkgrsweeaqlemeamledtglhhkrneeaqdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdlllkyrsg.rtiimsthhmdeadllgdriaiisqgrlycsgtplflk 1148
                    ++ l  ++   ++ a++g+ng+gk+tt sil+g+ pp sg v +   d  t+  l ++    r    + l ++pq   lf   t+ e + +           ++++ a+ e+ + le  gl++    +   +sgg ++++ +a af+ +   +vldep+s +d     s+ d +   rs  r +++ th    +  l dri ++ +gr+   gt   lk
  MMETSP1061-20121228|41987_1  437 VLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAATSapLTSItdleRpdqvRLLQLVPQAPALFN-TTILENVRYSrpdasEADVRKAMDSAHCEFVSKLE-GGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSnRGLLVITHRAK-TLELADRILVLKDGRVAEEGTLEELK 653 
                   4466777788889********************************9999987633323211112221135899*******97.5888888775222111123478999*****99998.69********************************************************9986266666666655.55689***********9999866555 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   2.3e-18   1.5e-16       6     223 ..     422     650 ..     418     663 .. 0.79

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 2.3e-18
    TIGR02323   6 vselsksyg..skkgcr..vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrsr..elellalseaerrlllrtewGlvhqnprGlrmevsaGanigerllavga.rhyGkiraaakwlekveidaari...kpaafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarllllrglvrelglaviivthlavarllaqrllvmkqGrvvesGltr 223
                  v+e+  sy   ++k++   +sf l  Gev+++vG+ GsGkst  + la+   +++G v+  + +   +  l+++++ er   +r    lv q p+ +  ++      + r+ a  a        a  ++++k+e     +   +  ++sGG +qr+ +ar+++++p ++++ ep+  +    +a l    +  r  +   +++th a +  la+r+lv+k Grv e+G  +
  MMETSP1061-20121228|41987_1 422 VEEVNFSYKanPSKAVLndLSFsLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSDAatSAPLTSITDLERPDQVRL-LQLVPQAPALFNTTILENVRYS-RPDASEAdVRKAMDSAHCEFVSKLEGGLYYTvgrNGIKMSGGQRQRIGLARAFLANPVFLVLdEPSSSMdAEGEASLKDAMAACRSSNRGLLVITHRAKTLELADRILVLKDGRVAEEGTLE 650
                  555555553113344333699*9*********************************998665555357789*********99999.99******99888887655554.55555440333344444559999998776654557789*******************876666*****9888999999999999999*******************************9765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   1.2e-09   7.9e-08     324     383 ..     424     483 ..     399     489 .. 0.83
   2 !   27.6   0.0   3.4e-09   2.3e-07     161     235 ..     566     642 ..     560     659 .. 0.83

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 1.2e-09
    TIGR03719 324 evenlskafgdklliddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelkiGe 383
                  ev+   ka  +k +++dlsf+l +g +v ++G nG+Gkst   +++g+  p+sG +++ +
  MMETSP1061-20121228|41987_1 424 EVNFSYKANPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYD 483
                  3333456667899*****************************************998755 PP

  == domain 2    score: 27.6 bits;  conditional E-value: 3.4e-09
    TIGR03719 161 klsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflkeykGt...vvavthdryfldnvaeWileldrGe 235
                  k+sGG+++r+ l+r +l +P +l+ldeP   +dae  a l+  ++  + +   ++++th    l+  a+ il l  G+
  MMETSP1061-20121228|41987_1 566 KMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSnrgLLVITHRAKTLE-LADRILVLKDGR 642
                  79**********************************99999998766543222899999877774.677777777776 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.8   0.0   1.7e-17   1.2e-15     260     483 ..     422     645 ..     420     656 .. 0.67

  Alignments for each domain:
  == domain 1    score: 54.8 bits;  conditional E-value: 1.7e-17
    TIGR02633 260 venltaydvvnrkikrvddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavlkkfak..ksrideaaelkaie.eeikrlkvktaspdl.piarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeGklka 483
                  ve++      n+ +  ++d+sfsl rGe++ + G  G+G++ +   l G yp +  g v l + + ++ +p+ +i +     p++ +   +vp+     n t+    +++    s+ d  +  ++ + e +++l+            ++sGG++q+  la+ +l np  l+ldep+  +d    + +   +++       ++v++   a+ l l+dr+lv+++G++  
  MMETSP1061-20121228|41987_1 422 VEEVNFSYKANPSKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQS-GGVSLYDSDAATSAPLTSITD--LERPDQVRLLQLVPQAPALFNTTILENVRYSRpdASEADVRKAMDSAHcEFVSKLEGGLYYTVGrNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVIT-HRAKTLELADRILVLKDGRVAE 645
                  5566666667777788888888888888888888888888888888888888775.446666677788888888876..345777777788888888888888777778764334444444443333133455554333222202235788888888888888888888888888888888888888888877776666666665.4577888888888888888765 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.3   0.0   2.8e-16   1.9e-14      17     232 ..     434     656 ..     419     664 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.3 bits;  conditional E-value: 2.8e-16
    TIGR02314  17 kikaldnvslfvpkgqifgvigasgagkstlircvnllekptsgaviv.dgkd.....lttlsnaelvkarrqigmifqhfnllssrtvfgnval..plelentpkekikrkvtellalv..glsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifshp 232
                      l+++s+ + +g+++ ++g  g+gkst    +  +  p sg v + d        lt++++ e  ++ r + ++ q   l+   t+++nv    p   e+  ++ ++    e+++ +  gl          +sggq+qr+ +ara+ ++p  l+ de +s++d     s+ + +    r  +  +l+ith  + + ++ d++ v+++g++ e+gt+ e+  + 
  MMETSP1061-20121228|41987_1 434 SKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLyDSDAatsapLTSITDLERPDQVRLLQLVPQAPALF-NTTILENVRYsrPDASEADVRKAMDSAHCEFVSKLegGLYYTVGRNGIKMSGGQRQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMA-ACRSSNRGLLVITHRAKTL-ELADRILVLKDGRVAEEGTLEELKKRK 656
                  44679******************************9999999999855154332223366777777777888888888887766.579*****6533778888899999999999998654478888899999*********************************988888777665.6799999********9987.689****************99986655 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.1   0.1     0.034       2.3      12      39 ..     438     465 ..     431     471 .. 0.83
   2 !   29.4   0.0   7.7e-10   5.2e-08     477     586 ..     556     657 ..     532     665 .. 0.89

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.034
    TIGR00630  12 LknidvelprdklvvitGlsGsGkssLa 39 
                  L++++ +l+r ++v + G  GsGks+ a
  MMETSP1061-20121228|41987_1 438 LNDLSFSLSRGEVVALVGKNGSGKSTTA 465
                  7788888999999999999999999866 PP

  == domain 2    score: 29.4 bits;  conditional E-value: 7.7e-10
    TIGR00630 477 dYLsleraaetlsGGeaqrirlatqiGsgLvGvlYvlDePsiGLhqrDnerLietlkrlrdlGntlivvehDeetireaDyvvdiGPgaGehGGevvasgsleellkkke 586
                   Y ++ r+   +sGG +qri la    ++   v+ vlDePs  +    +  L +++   r     l+v+ h  +t++ aD+++ +      + G+v  +g+leel+k+k+
  MMETSP1061-20121228|41987_1 556 LYYTVGRNGIKMSGGQRQRIGLARAFLAN--PVFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHRAKTLELADRILVL------KDGRVAEEGTLEELKKRKD 657
                  377999******************98775..6999***********************************************976......5678888888888887765 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   8.2e-10   5.5e-08     737     984 ..     398     645 ..     383     654 .. 0.75

  Alignments for each domain:
  == domain 1    score: 28.7 bits;  conditional E-value: 8.2e-10
    TIGR00956 737 dltdeseevneeveeekesgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeR...vttGvitegdr......lvngrkldssFq.RsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGeGLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrkladaGqailCtiHqPsailleeFDrLLllqkGGktvY 984
                  + ++e++++ ++ + +++   +  ++ ++++  k +  ++ +L++++  +  G++ AL+G+ G Gk t   +La+    + +Gv   +        l   ++l+   q R    v q    l ++t+ e +r+s      ++v k+    + e v kl +   y    vG  G+ ++  qR+r+ ++    A+P ++l lDeP s +D+   +s+   +     + + +l   H   a  le  Dr+L+l+ G +++ 
  MMETSP1061-20121228|41987_1 398 PQSSERDSASSSPSLDTDVV-QKLSVEEVNFSYKANP-SKAVLNDLSFSLSRGEVVALVGKNGSGKSTTASILAGMyppQSGGVSLYDSDaatsapLTSITDLERPDQvRLLQLVPQA-PALFNTTILENVRYSRPDASEADVRKAMDSAHCEFVSKLEGGLYY---TVGRNGIKMSGGQRQRIGLARAFLANP-VFLVLDEPSSSMDAEGEASLKDAMAACRSSNRGLLVITHR--AKTLELADRILVLKDG-RVAE 645
                  44444444444444444433.2345566777766654.56899*******************************97332456765444330111114444444444442444555554.567789***********99**************999987665555...5**************************.8888*******************************99997..6778999******987.6655 PP

>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.1       1.9   1.2e+02      59     130 ..     136     205 ..      99     289 .. 0.58
   2 !   14.4   0.0     9e-05     0.006     194     222 ..     444     472 ..     408     482 .. 0.87

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 1.9
    TIGR03499  59 aaseeeeakkaleeaepkklskaeekeekekeaeekaaeaaqeaekkleeae........eelrkelkalkellekqlse 130
                  + +ee+ea+++ ++ ++++ ++  +  ++++++e+ +++++          +          l+++++ + ++++++l++
  MMETSP1061-20121228|41987_1 136 QVEEEKEASSTDSDGAKSEGASGIDTSDSKETTEKRQTSTS----------TgvtpaavaVILKDDVDVVANTVTNTLAN 205
                  22222222222222222222222222222222222222222..........02222223344445555555554444444 PP

  == domain 2    score: 14.4 bits;  conditional E-value: 9e-05
    TIGR03499 194 ilekggviaLvGptGvGKTTTlAKLAarf 222
                   l++g v+aLvG  G+GK TT   LA  +
  MMETSP1061-20121228|41987_1 444 SLSRGEVVALVGKNGSGKSTTASILAGMY 472
                  568899***************99888765 PP

>> TIGR00152  TIGR00152: dephospho-CoA kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.1   0.00021     0.014       1      23 [.     450     472 ..     450     483 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00021
    TIGR00152   1 iigltGgigsGKstvakilkdky 23 
                  +++l+G+ gsGKst+a il+  y
  MMETSP1061-20121228|41987_1 450 VVALVGKNGSGKSTTASILAGMY 472
                  79*****************9877 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   0.00024     0.016      52     116 ..     423     485 ..     400     500 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 0.00024
    TIGR00064  52 eelkealkeileketklelkelkeekkpnvillvGvNGvGKTttiaKlakllkkegkkvllaAgD 116
                  ee++ ++k + +k   +      + ++  v+ lvG NG+GK tt + la ++  +   v l  +D
  MMETSP1061-20121228|41987_1 423 EEVNFSYKANPSKAVLN--DLSFSLSRGEVVALVGKNGSGKSTTASILAGMYPPQSGGVSLYDSD 485
                  44444444433333333..3456778889********************9998777666665555 PP

>> TIGR00606  rad50: rad50
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0       1.1        73      32      69 ..     452     484 ..     448     498 .. 0.75
   2 ?    9.0   0.0   0.00075      0.05    1211    1275 ..     572     631 ..     559     639 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.4 bits;  conditional E-value: 1.1
    TIGR00606  32 llvGPnGaGkttiiealkyittGdlPpgkkgntfvhdp 69 
                   lvG nG+Gk t+   l    +G +Pp+  g   ++d+
  MMETSP1061-20121228|41987_1 452 ALVGKNGSGKSTTASIL----AGMYPPQSGGV-SLYDS 484
                  59**********98755....67778777665.45555 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00075
    TIGR00606 1211 lirlalaevfclnCgiialdePttnldrekieslaialveiiksrsrqrdlqllvithdedlvel 1275
                     r+ la  f  n   + ldeP   +d e   sl  a++   + rs +r   llvith  + +el
  MMETSP1061-20121228|41987_1  572 RQRIGLARAFLANPVFLVLDEPSSSMDAEGEASLKDAMA---ACRSSNR--GLLVITHRAKTLEL 631 
                   569*************************99999998887...4577666..58*****8877765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       334  (0.0814237); expected 82.0 (0.02)
Passed bias filter:                      212  (0.0516821); expected 82.0 (0.02)
Passed Vit filter:                        80  (0.0195027); expected 4.1 (0.001)
Passed Fwd filter:                        61  (0.0148708); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              61  [number of targets reported over threshold]
# CPU time: 1.38u 0.17s 00:00:01.54 Elapsed: 00:00:01.36
# Mc/sec: 648.30
//
Query:       MMETSP1061-20121228|42002_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|42018_1  [L=422]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   12.1   0.6       0.38    8.4   0.0    3.0  4  TIGR03042 PS_II_psbQ_bact: photosystem II protein PsbQ


Domain annotation for each model (and alignments):
>> TIGR03042  PS_II_psbQ_bact: photosystem II protein PsbQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   0.0       0.2   8.3e+02      73      98 ..     201     226 ..     200     230 .. 0.84
   2 ?   -1.3   0.0     0.096   3.9e+02      72      99 ..     240     267 ..     234     271 .. 0.83
   3 ?   -1.7   0.0      0.12     5e+02      71      94 ..     280     303 ..     279     319 .. 0.70
   4 ?    8.4   0.0   9.3e-05      0.38      72     106 ..     322     356 ..     317     358 .. 0.93

  Alignments for each domain:
  == domain 1    score: -2.4 bits;  conditional E-value: 0.2
    TIGR03042  73 GPlgevrremtylnqsLlpkdkkeak 98 
                  GPlg + r +    +s++++++++ k
  MMETSP1061-20121228|42018_1 201 GPLGAIERRVVDFVESIQRSERERTK 226
                  99999999999999999998888765 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.096
    TIGR03042  72 hGPlgevrremtylnqsLlpkdkkeakk 99 
                  +GPlge+    +   +++l++++ ++++
  MMETSP1061-20121228|42018_1 240 RGPLGEAELRASEAIREILESERMRMTE 267
                  7*****9999998888999988887765 PP

  == domain 3    score: -1.7 bits;  conditional E-value: 0.12
    TIGR03042  71 ihGPlgevrremtylnqsLlpkdk 94 
                  i GPlge+ + ++ + +   ++ +
  MMETSP1061-20121228|42018_1 280 IPGPLGELEMAVLEVFRAEEQRKQ 303
                  669999999888777665544444 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 9.3e-05
    TIGR03042  72 hGPlgevrremtylnqsLlpkdkkeakklakelke 106
                  +GPlge+  + t   ++L +++k++++++ + l e
  MMETSP1061-20121228|42018_1 322 KGPLGELEAQATEAVKRLTDEEKQRVRNIQRYLDE 356
                  7****************************998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (422 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       211  (0.0514383); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.16s 00:00:00.39 Elapsed: 00:00:00.30
# Mc/sec: 1856.65
//
Query:       MMETSP1061-20121228|42038_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 521.36
//
Query:       MMETSP1061-20121228|42042_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 288.42
//
Query:       MMETSP1061-20121228|42043_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.01   12.7   0.0      0.011   12.6   0.0    1.0  1  TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR02818  adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   2.7e-06     0.011     163     221 ..       2      60 ..       1      66 [. 0.90

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.7e-06
    TIGR02818 163 vcllgcgvttgigavlntakveegatvavfglggiglsviqgaklakasriiaidinea 221
                  vc lg   +    av    kv+e at av g   +    + g k a+a rii  + +e+
  MMETSP1061-20121228|42043_1   2 VCRLGAPSAQQGNAVEAIGKVRESATGAVAGNTHLHPGNLAGVKAAEALRIIREEEEED 60 
                  8999999999999**************************************98766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.32
# Mc/sec: 288.73
//
Query:       MMETSP1061-20121228|42047_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.24
# Mc/sec: 296.98
//
Query:       MMETSP1061-20121228|42058_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.28
# Mc/sec: 245.77
//
Query:       MMETSP1061-20121228|42062_1  [L=1029]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1029 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.34
# Mc/sec: 3994.61
//
Query:       MMETSP1061-20121228|42099_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 293.31
//
Query:       MMETSP1061-20121228|42097_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-24   84.3   0.0      3e-24   83.6   0.0    1.4  1  TIGR00673 cynS: cyanate hydratase
  ------ inclusion threshold ------
      0.017   12.8   0.0       0.03   12.0   0.0    1.4  1  TIGR02607 antidote_HigA: addiction module antidote protein, HigA family


Domain annotation for each model (and alignments):
>> TIGR00673  cynS: cyanate hydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   0.0   1.4e-27     3e-24      27     147 ..       2     124 ..       1     127 [. 0.90

  Alignments for each domain:
  == domain 1    score: 83.6 bits;  conditional E-value: 1.4e-27
    TIGR00673  27 vedklGkaevyvaavlygqaaadadeakkvaell.dleedevaelkd.aPlregldpvvPtdPlvyrlyevlqvyGtalkevvhekfGdGilsaidfkldvekvadp.ggervvvtlnGkylpy 147
                  ++ +lG ++ yva +l+gqa++     +k+ + l dl e+++  +++  P+r    + +  +P vyr ye ++  G ++k+++ e+ GdGi+saidf  dv  ++   g  rvv+tlnGk+lp+
  MMETSP1061-20121228|42097_1   2 LAARLGVTNTYVAQLLMGQAKLTPHTGEKLRDALpDLCEKDLEAMQNeFPMRTF-CDEILKEPNVYRTYEAIMHNGESIKAIINEQCGDGIMSAIDFYCDVGSIKGHlGETRVVITLNGKFLPF 124
                  67899************************9998879******999862566655.566779*******************************************9997888***********97 PP

>> TIGR02607  antidote_HigA: addiction module antidote protein, HigA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   1.5e-05      0.03      25      61 ..       1      37 [.       1      56 [. 0.82

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 1.5e-05
    TIGR02607 25 alAkalgvsrstlsrivngraaitadmAlrLakalgt 61
                 +lA++lgv+++ + +++ g+a++t+ +  +L  al  
  MMETSP1061-20121228|42097_1  1 QLAARLGVTNTYVAQLLMGQAKLTPHTGEKLRDALPD 37
                 69*************************9999988864 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.19
# Mc/sec: 1583.87
//
Query:       MMETSP1061-20121228|42105_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 713.94
//
Query:       MMETSP1061-20121228|42107_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|42111_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       16  (0.00390054); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.21
# Mc/sec: 326.83
//
Query:       MMETSP1061-20121228|42115_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 361.54
//
Query:       MMETSP1061-20121228|42116_1  [L=36]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (36 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 182.75
//
Query:       MMETSP1061-20121228|42121_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 809.93
//
Query:       MMETSP1061-20121228|42151_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 1172.06
//
Query:       MMETSP1061-20121228|42163_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 766.79
//
Query:       MMETSP1061-20121228|42165_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 607.15
//
Query:       MMETSP1061-20121228|42181_1  [L=791]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-20   70.1   0.0    6.4e-11   39.8   0.0    4.2  3  TIGR00552 nadE: NAD+ synthetase
     0.0011   16.2   0.0     0.0057   13.8   0.0    1.9  2  TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase


Domain annotation for each model (and alignments):
>> TIGR00552  nadE: NAD+ synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   4.7e-07   0.00097      12      47 ..     370     405 ..     359     435 .. 0.78
   2 !   39.8   0.0   3.1e-14   6.4e-11      51     198 ..     456     640 ..     450     645 .. 0.73
   3 !    6.3   0.0    0.0005         1     191     206 ..     662     677 ..     657     686 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 4.7e-07
    TIGR00552  12 flkekvkksgakgvvlGlSGGiDSavvaalavealg 47 
                  +l +++++sga+g  l lSGG DS++va++   + +
  MMETSP1061-20121228|42181_1 370 WLWDYLRRSGASGYLLPLSGGADSSAVATIVMAMCH 405
                  8999***********************999876554 PP

  == domain 2    score: 39.8 bits;  conditional E-value: 3.1e-14
    TIGR00552  51 vlalilpesnqaseqdvqdalalveklgietkeikiepiaaslqakkekls...........eekdklakgNlkaRlRmallyaian................klnlLvlgTgnksElvlGyfTkyGDgacdlaplaellKtqvkeLakelnv.........PeeiiekaPtAdLleg.qtDEee 198
                  vl ++ + ++++s++ ++ a+ l e +g  + +++i++++++  + +  ++             ++ la +N++aRlRm++ y +a+                k  lLvlg  n  E + Gy+Tky   ++dl+p++ + K + k+++ +             eei   +PtA+L ++ q+D+++
  MMETSP1061-20121228|42181_1 456 VLHTVFMGTVNSSHNTTNRARRLGEAIGSYHLTVPIDKMVEAVLQVFALATgqtprflarggTLAEDLALQNIQARLRMVTAYLFAQllpwtrklagdehaggKGFLLVLGSANVDEGLRGYMTKYDCSSADLNPIGAISKGDLKRMLLWASKaygsrsgpvLEEIAGAPPTAELRPNsQADDND 640
                  55667777778788888888899999998888888888887655444333300000111111345667778************9987333333322222222133469*************************************9988877677889995559************998999877 PP

  == domain 3    score: 6.3 bits;  conditional E-value: 0.0005
    TIGR00552 191 egqtDEeelgitYdel 206
                  + q DEee+g+tYdel
  MMETSP1061-20121228|42181_1 662 HSQLDEEEMGMTYDEL 677
                  679***********98 PP

>> TIGR03381  agmatine_aguB: N-carbamoylputrescine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0   2.8e-06    0.0057       3     129 ..      17     142 ..      15     146 .. 0.72
   2 ?   -0.5   0.0     0.065   1.3e+02     144     171 ..     191     219 ..     183     306 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 2.8e-06
    TIGR03381   3 vaavql.alsedveeniekaeklvreaaakGaqiillpelfeapyfckeqeeeyfelakpveeh..plikrlqklakelevvlpvsf..fekagnalynslavidadGevlgvyrkshiPdgpgyeekfyfk 129
                  va+  l + + d + n+e++ +  ++a+a Ga+  l pel    y c++    +f  a +++++  +li+ l++    l+++   ++    + +  +yn  +v   + ++l +  k+++ d+ +y+e  yf 
  MMETSP1061-20121228|42181_1  17 VATCTLnQWALDFDGNLERIVESCQQAKASGAKYRLGPELEICGYGCED----HFLEADTIDHSwqSLIQLLTQTDVTLDMICDFGMplLGN-DGCRYNCRVVC-YNRTILWIRPKTYLADDGNYRESRYFA 142
                  66655513567999****************************99*9976....566666555431145555555555566655554410344.44678876655.4678999999***************97 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 0.065
    TIGR03381 144 kiGvgicWdqWfpeaara.lalkGaevll 171
                   iG   c + W p+ + + lal+G e++ 
  MMETSP1061-20121228|42181_1 191 AIGCETCEELWVPDPSHVeLALRGVEIIG 219
                  58888999999999887559999999974 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (791 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.33
# Mc/sec: 3163.74
//
Query:       MMETSP1061-20121228|42210_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|42217_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      175  (0.0426621); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 989.92
//
Query:       MMETSP1061-20121228|42220_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 421.11
//
Query:       MMETSP1061-20121228|42228_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 345.69
//
Query:       MMETSP1061-20121228|42241_1  [L=631]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-32  110.7   0.0    3.5e-18   63.5   0.0    3.0  3  TIGR03990 Arch_GlmM: phosphoglucosamine mutase
    8.5e-19   65.4   0.0    5.3e-15   52.9   0.0    2.9  3  TIGR01455 glmM: phosphoglucosamine mutase
      1e-07   28.6   0.1     0.0097   12.2   0.0    3.3  3  TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific


Domain annotation for each model (and alignments):
>> TIGR03990  Arch_GlmM: phosphoglucosamine mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.5   0.0   2.6e-21   3.5e-18       4     145 ..      59     226 ..      57     232 .. 0.81
   2 !   39.1   0.0   6.8e-14   9.3e-11     179     349 ..     291     481 ..     283     538 .. 0.69
   3 !    4.4   0.0    0.0023       3.1     410     428 ..     586     604 ..     576     617 .. 0.85

  Alignments for each domain:
  == domain 1    score: 63.5 bits;  conditional E-value: 2.6e-21
    TIGR03990   4 fgtsGiRgvvg...eeltpelalkvakalgtvl................ekkkvvvgrDtRtsgel.lenaviagll.....stGvdVvdl.glvptPtlqyavkeegadaGimiTASHNPpeyNgiKllnsdGvelsreeeeeieeilekeefelaewdevgkvkee 145
                  fgt G R  ++    +++  ++ + a+ l++++                ++   vvg D R   ++ ++++  a l+     ++G+d + l g+v tP + +a ++ ga +GimiTASHNP+++Ng K+  sdG+++++   +ei + + ++   +++++++ + ++ 
  MMETSP1061-20121228|42241_1  59 FGTAGLRSEMKpgpLGMNDLTVCQTAQGLAKYClkqgqqkggsedgvkpSRLCAVVGYDHRSNPSMnISSLSFAILTaivfaEAGIDCILLdGFVLTPLVPFALQQLGAVCGIMITASHNPKQDNGYKVYASDGCQIRAPMDKEIASEILDNLQPWTDYETIIEERTR 226
                  788888888876666778888888888888888888888888888886666778*******87666344433333331112278***9998789**********************************************************9999999999887744 PP

  == domain 2    score: 39.1 bits;  conditional E-value: 6.8e-14
    TIGR03990 179 gagslvtpellrelgvk...vitlnaepdGtFpgrn..pEPteenLkelskl.vketgadlgiahDgDaDRlvlvdekg.....efieedktlallakallekkk...gg..kvvtnvssSravedvleeagvevirtk.....vGevnvaeklkeegavfGgEgnGgvifpelqlvrDgllaaalllella 349
                  g g  ++ + ++ +g++    ++ + epd++Fp     p+P e    +l k+  +e+g+d+ +a D+DaDRl++ +++      +++++d+  ++l  +++e+++    +  +++++  sS+++ ++ ++ g +v+ t      +G+  v+ + +  + +fG E+  g+    + + +Dg+ a++ + el  
  MMETSP1061-20121228|42241_1 291 GIGYPFAKRAFEVFGLRpfhAVPEQREPDPSFP-TVpfPNPEEAGALDLGKVfATENGCDIVLANDPDADRLAVAEKDRttgewTVFSGDQIGVMLGLWIWETTGmksDKpvSMCVSTVSSKMLAEIGRREGFHVEETLtgfkwIGSRSVSLETEGYRNLFGYEEAIGFACGSVGFDKDGISAMVVMSELAL 481
                  566666666666666664224455789******.550255555555555555167899***************99876522233589******999999977554321222256667778***************998522333778888888888889*************************99988743 PP

  == domain 3    score: 4.4 bits;  conditional E-value: 0.0023
    TIGR03990 410 vlvRpSgTEpivRiyaEak 428
                  + +RpSgTEp++  y+E k
  MMETSP1061-20121228|42241_1 586 IQLRPSGTEPKFKYYTEMK 604
                  579***********99976 PP

>> TIGR01455  glmM: phosphoglucosamine mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.9   0.0   3.9e-18   5.3e-15      20     132 ..      91     210 ..      59     227 .. 0.77
   2 !    8.6   0.0   0.00011      0.14     226     307 ..     343     432 ..     331     494 .. 0.72
   3 ?   -0.2   0.0     0.048        65     405     422 ..     585     602 ..     576     623 .. 0.77

  Alignments for each domain:
  == domain 1    score: 52.9 bits;  conditional E-value: 3.9e-18
    TIGR01455  20 alklGaaagrvlkkrestkkkvviGkDtRlsgemlesalv.aGLts.....aGvevlkl.GvlptPavayltralradaGvvisashnPyeDnGiklFgaeGlklddeleeeiealldee 132
                   lk G+  g +    + ++  +v+G D R    m  s+l  a Lt+     aG++ + l G + tP v +  ++l+a  G++i ashnP++DnG k++  +G ++   +++ei +++ ++
  MMETSP1061-20121228|42241_1  91 CLKQGQQKGGSEDGVKPSRLCAVVGYDHRSNPSMNISSLSfAILTAivfaeAGIDCILLdGFVLTPLVPFALQQLGAVCGIMITASHNPKQDNGYKVYASDGCQIRAPMDKEIASEILDN 210
                  45555555555555556666799******99999666553233433222238***988779****************************************************9998776 PP

  == domain 2    score: 8.6 bits;  conditional E-value: 0.00011
    TIGR01455 226 vreseadlGlafDGDaDRvlavDek...Gd..ivdGDkillllakalkesgeLken....tvvatvmsnlglekaleklglklartavGDr 307
                   +e++ d+ la D DaDR+ + ++    G+  +  GD+i ++l+  + e++ +k++    + v+tv s + l +  +++g +++ t  G +
  MMETSP1061-20121228|42241_1 343 ATENGCDIVLANDPDADRLAVAEKDrttGEwtVFSGDQIGVMLGLWIWETTGMKSDkpvsMCVSTVSSKM-LAEIGRREGFHVEETLTGFK 432
                  468999************98776532225432579****9999987777666665511115667776665.44555667777777766555 PP

  == domain 3    score: -0.2 bits;  conditional E-value: 0.048
    TIGR01455 405 RillRpsGtepliRvmve 422
                   i lRpsGtep  +   e
  MMETSP1061-20121228|42241_1 585 IIQLRPSGTEPKFKYYTE 602
                  478*******97766655 PP

>> TIGR01132  pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   7.1e-06    0.0097     105     170 ..     142     199 ..      50     212 .. 0.71
   2 !   11.1   0.1   1.5e-05     0.021     293     446 ..     343     506 ..     334     530 .. 0.69
   3 ?    1.0   0.0     0.017        24     507     524 ..     587     604 ..     572     627 .. 0.69

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 7.1e-06
    TIGR01132 105 nqvevivqennrytptpavshailtynkgkkealadGivitpshnppedGGikynppnGGpaetev 170
                   ++++i+   +++  tp v +a+       + +   Gi+it shnp +d G k    +G    + +
  MMETSP1061-20121228|42241_1 142 AGIDCIL--LDGFVLTPLVPFALQ------QLGAVCGIMITASHNPKQDNGYKVYASDGCQIRAPM 199
                  4555555..456666676666653......344578*****************9988886544444 PP

  == domain 2    score: 11.1 bits;  conditional E-value: 1.5e-05
    TIGR01132 293 klkdkydlafgndadadrhGivtpdkGl....lnpnhylavaie.ylykh.rqqwaaevavGktlvssalidrvvadlgrklvevpvGfkwfvdGlld....g.slGfGGeesaGasflrkdGtvwstdkdGi....ilallaaeitavtGknpqqrydelaakyGdpi 446
                  +  +  d+ ++nd+dadr  +   d+      +     + v +  ++++    +  + v++  + vss ++  ++   g ++ e   Gfkw+ +  ++    g +  fG ee+ G +     G+    dkdGi    +++ la  +    G + +++ + l  kyG ++
  MMETSP1061-20121228|42241_1 343 ATENGCDIVLANDPDADRLAVAEKDRTTgewtVFSGDQIGVMLGlWIWETtGMKSDKPVSMCVSTVSSKMLAEIGRREGFHVEETLTGFKWIGSRSVSleteGyRNLFGYEEAIGFAC----GS-VGFDKDGIsamvVMSELALYVYRERGISLKHQMESLYDKYGYFV 506
                  56677899**********99987765540011334444555554133433034445668888899**************************976544311112134588999988543....44.46899997333355666666677778788888888888888765 PP

  == domain 3    score: 1.0 bits;  conditional E-value: 0.017
    TIGR01132 507 aarpsGtedvykiyaesf 524
                    rpsGte  +k y+e  
  MMETSP1061-20121228|42241_1 587 QLRPSGTEPKFKYYTEMK 604
                  56************9953 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (631 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 2523.79
//
Query:       MMETSP1061-20121228|42267_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   12.5   0.0      0.033   12.3   0.0    1.1  1  TIGR04165 methano_modCys: Cys-rich peptide, TIGR04165 family


Domain annotation for each model (and alignments):
>> TIGR04165  methano_modCys: Cys-rich peptide, TIGR04165 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   8.1e-06     0.033      18      48 ..       5      34 ..       2      36 .. 0.72

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 8.1e-06
    TIGR04165 18 KdvsrkfddehkaeaevgeikCskCGyvFet 48
                 + ++r   +   +  + ++++C+  G++F+ 
  MMETSP1061-20121228|42267_1  5 RALRRGTNE-RFKSMQCKAMQCNAVGHIFIL 34
                 555554444.5556789************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|42268_1  [L=658]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (658 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.26
# Mc/sec: 3340.34
//
Query:       MMETSP1061-20121228|42283_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 701.94
//
Query:       MMETSP1061-20121228|42286_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 333.12
//
Query:       MMETSP1061-20121228|42292_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 608.62
//
Query:       MMETSP1061-20121228|42293_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 533.96
//
Query:       MMETSP1061-20121228|42304_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|42307_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 335.47
//
Query:       MMETSP1061-20121228|42326_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|42332_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 673.84
//
Query:       MMETSP1061-20121228|42342_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        40  (0.00975134); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.18s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 327.10
//
Query:       MMETSP1061-20121228|42339_1  [L=348]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (348 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.18s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1997.05
//
Query:       MMETSP1061-20121228|42345_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.9e-40  134.5   0.1    9.7e-40  134.4   0.1    1.0  1  TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase


Domain annotation for each model (and alignments):
>> TIGR01072  murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.4   0.1   2.4e-43   9.7e-40     278     373 ..       3      98 .]       1      98 [] 0.99

  Alignments for each domain:
  == domain 1    score: 134.4 bits;  conditional E-value: 2.4e-43
    TIGR01072 278 ensieveakkkelkavdietkpyPgFptDlqaqfmallsqaeGtsvitetvfenRlmhveeLkrmgaeiklegnsavvkGveeLsgaevvatDlRA 373
                  e++ie+++k k++ka++i+t+pyP+FptD+qaqf a+++++eG+s+++et+fenR+mh++e++rmga+i++++n+avv+Gve+L++a+v+atDlRA
  MMETSP1061-20121228|42345_1   3 EDWIELDMKGKRPKAINITTAPYPAFPTDMQAQFSAMNAVSEGVSILKETIFENRFMHMQEMIRMGAKINIDANTAVVEGVERLQAAPVMATDLRA 98 
                  899********************************************************************************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 615.95
//
Query:       MMETSP1061-20121228|42370_1  [L=237]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (237 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.20s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1360.06
//
Query:       MMETSP1061-20121228|42405_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1885.56
//
Query:       MMETSP1061-20121228|42393_1  [L=999]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (999 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.13s 00:00:00.59 Elapsed: 00:00:00.35
# Mc/sec: 3767.35
//
Query:       MMETSP1061-20121228|42423_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0033   15.4   0.5       0.15   10.1   0.6    2.2  2  TIGR04086 TIGR04086_membr: putative membrane protein, TIGR04086 family


Domain annotation for each model (and alignments):
>> TIGR04086  TIGR04086_membr: putative membrane protein, TIGR04086 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.6   3.6e-05      0.15      46      76 ..      25      55 ..       3      80 .. 0.80
   2 !    3.0   0.0    0.0057        24      40      57 ..     112     129 ..     105     133 .. 0.66

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 3.6e-05
    TIGR04086 46 svfvGGfvagkkakekgllvGllvGllyfli 76
                 sv++ G+  +k+ + +g+ vG++vG++ + +
  MMETSP1061-20121228|42423_1 25 SVVMVGLRKSKRGGGRGFAVGFAVGFALVGT 55
                 67788888899**************988765 PP

  == domain 2    score: 3.0 bits;  conditional E-value: 0.0057
    TIGR04086  40 liililsvfvGGfvagkk 57 
                  ++++++++ v+G+v+g k
  MMETSP1061-20121228|42423_1 112 CVCVCACACVCGMVMGNK 129
                  455556666777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1014.23
//
Query:       MMETSP1061-20121228|42425_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0023   14.8   0.0     0.0029   14.5   0.0    1.1  1  TIGR02860 spore_IV_B: stage IV sporulation protein B
     0.0069   13.2   0.0     0.0074   13.1   0.0    1.1  1  TIGR02037 degP_htrA_DO: peptidase Do
  ------ inclusion threshold ------
      0.039   10.6   0.0      0.039   10.6   0.0    1.1  1  TIGR00054 TIGR00054: RIP metalloprotease RseP


Domain annotation for each model (and alignments):
>> TIGR02860  spore_IV_B: stage IV sporulation protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   2.1e-06    0.0029     129     177 ..      76     125 ..      62     136 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 2.1e-06
    TIGR02860 129 agiqvGDlilkvngekikeeedvaklineag.geklkltikRkkkkiekk 177
                   +i+ GD+++kvn+++++e   + +l +  + + k+++++kR++ ++e+k
  MMETSP1061-20121228|42425_1  76 DRIKPGDRLVKVNERPVEEFPSLWDLNDYLKkELKITIHVKRDGLHLEQK 125
                  67999******************99998888566899999***9999865 PP

>> TIGR02037  degP_htrA_DO: peptidase Do
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   5.4e-06    0.0074     363     427 ..      52     119 ..      15     126 .. 0.70

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.4e-06
    TIGR02037 363 skeekkgvvvtkvkkkspaakag...lkkgdvilsvnqkevksvaelkkvleeakkkervlllvergg 427
                    ++kk   v++v k+  ++k+    +k+gd +++vn+++v++   l ++ + +kk+ ++++ v+r+g
  MMETSP1061-20121228|42425_1  52 LGSTKKEFFVKEVVKGGLFHKIHgdrIKPGDRLVKVNERPVEEFPSLWDLNDYLKKELKITIHVKRDG 119
                  44455566677777776666654445788888888888888877777777777777777777777776 PP

>> TIGR00054  TIGR00054: RIP metalloprotease RseP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   2.9e-05     0.039     220     266 ..      78     125 ..      18     137 .. 0.67

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 2.9e-05
    TIGR00054 220 lkeGDkilkidgeklkswr...dlvklvkenpeksleikveRngetlslk 266
                  +k+GD+++k+++ ++++     dl   +k+  e ++ i+v+R+g  l++k
  MMETSP1061-20121228|42425_1  78 IKPGDRLVKVNERPVEEFPslwDLNDYLKK--ELKITIHVKRDGLHLEQK 125
                  567777777777666654411144444444..556666777777555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 797.67
//
Query:       MMETSP1061-20121228|42440_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 666.89
//
Query:       MMETSP1061-20121228|42451_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.026   12.2   0.0       0.04   11.6   0.0    1.2  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   9.6e-06      0.04      94     128 ..     128     162 ..     124     168 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 9.6e-06
    TIGR00080  94 vlaelvgrdglvvsierieeLvekaerrlkkLeld 128
                  + a lvgr   vv i  ie L ++a++ l+k+  +
  MMETSP1061-20121228|42451_1 128 CRADLVGRRCYVVPISEIEPLIKRAKKSLRKISTH 162
                  7899***************************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1074.77
//
Query:       MMETSP1061-20121228|42456_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       169  (0.0411994); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|42466_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 389.68
//
Query:       MMETSP1061-20121228|42446_1  [L=490]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-07   27.4  16.4     0.0089   13.6   0.1    5.8  6  TIGR02167 Liste_lipo_26: bacterial surface protein 26-residue repeat


Domain annotation for each model (and alignments):
>> TIGR02167  Liste_lipo_26: bacterial surface protein 26-residue repeat
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.3   0.0    0.0038        16      16      25 ..     216     225 ..     212     226 .. 0.85
   2 !    4.8   0.1    0.0012       5.1       2      26 .]     228     251 ..     227     251 .. 0.74
   3 !    5.2   0.0   0.00094       3.9       1      21 [.     252     271 ..     252     274 .. 0.95
   4 !    8.4   0.2   9.3e-05      0.38       1      23 [.     277     298 ..     277     300 .. 0.89
   5 !   13.6   0.1   2.2e-06    0.0089       1      25 [.     302     325 ..     302     326 .. 0.96
   6 ?   -2.8   0.3      0.31   1.3e+03       1       9 [.     327     335 ..     327     336 .. 0.86

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0038
    TIGR02167  16 fdTsnVTnMs 25 
                  ++ s+VT ++
  MMETSP1061-20121228|42446_1 216 WNLSKVTSLT 225
                  *******876 PP

  == domain 2    score: 4.8 bits;  conditional E-value: 0.0012
    TIGR02167   2 FsgCssLtsLDlSnfdTsnVTnMss 26 
                  F+ ++ +++ +l  +d+s VT  ++
  MMETSP1061-20121228|42446_1 228 FYWNKDFNQ-PLNCWDVSRVTHTKY 251
                  566666666.7777*******8775 PP

  == domain 3    score: 5.2 bits;  conditional E-value: 0.00094
    TIGR02167   1 MFsgCssLtsLDlSnfdTsnV 21 
                  MF++ +++++ ++  +++s V
  MMETSP1061-20121228|42446_1 252 MFGHAEAFNQ-PINEWNVSRV 271
                  9*********.********99 PP

  == domain 4    score: 8.4 bits;  conditional E-value: 9.3e-05
    TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTn 23 
                  MF + +++++ ++  +d+s+VT 
  MMETSP1061-20121228|42446_1 277 MFWDAKAFNQ-PINEWDVSKVTS 298
                  8888999999.9**********6 PP

  == domain 5    score: 13.6 bits;  conditional E-value: 2.2e-06
    TIGR02167   1 MFsgCssLtsLDlSnfdTsnVTnMs 25 
                  MF +  s+++ +l+ +++s VT M+
  MMETSP1061-20121228|42446_1 302 MFDEAYSFNQ-PLDEWNVSRVTSMY 325
                  99********.*************6 PP

  == domain 6    score: -2.8 bits;  conditional E-value: 0.31
    TIGR02167   1 MFsgCssLt 9  
                  MFs  s+++
  MMETSP1061-20121228|42446_1 327 MFSFASAFN 335
                  9**999986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (490 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.26
# Mc/sec: 2487.49
//
Query:       MMETSP1061-20121228|42468_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 424.66
//
Query:       MMETSP1061-20121228|42449_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-57  192.5   6.7    2.1e-26   90.3   0.2    3.9  4  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    3.6e-20   70.3   2.9    8.5e-13   45.9   0.1    3.4  4  TIGR01622 SF-CC1: splicing factor, CC1-like family
    2.6e-11   40.8   5.9    5.6e-09   33.1   0.3    3.0  3  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    1.3e-07   29.0   0.0    0.00065   16.8   0.0    2.1  2  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.7e-05   22.4   0.0      0.036   11.4   0.0    3.0  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
  ------ inclusion threshold ------
      0.022   12.2   0.2        3.3    5.1   0.0    2.6  3  TIGR01659 sex-lethal: sex-lethal family splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.8   3.2      0.51   3.5e+02      25      36 ..       8      19 ..       2      21 .. 0.57
   2 !   48.9   0.0   1.1e-16   7.4e-14     160     266 ..      54     158 ..      20     174 .. 0.77
   3 !   53.0   0.0   6.4e-18   4.4e-15     167     267 ..     177     274 ..     161     294 .. 0.89
   4 !   90.3   0.2   3.1e-29   2.1e-26     408     510 .]     309     406 ..     295     406 .. 0.94

  Alignments for each domain:
  == domain 1    score: -2.8 bits;  conditional E-value: 0.51
    TIGR01642 25 RkRsrdrsrdRd 36
                 R+Rsr+rsr+Rd
  MMETSP1061-20121228|42449_1  8 RQRSRSRSRERD 19
                 555555555554 PP

  == domain 2    score: 48.9 bits;  conditional E-value: 1.1e-16
    TIGR01642 160 itdlpvl..aveqqatrkaRrlyvgniPpeakeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsiiyenvslkirRphdYiPvpe 266
                  ++ lpvl  a     ++ +R l+vgn Pp++ e  + +F+n  ++ v     +   ++++  +n  +kFaf+E+   e a +al+l++i++ + +lk+ Rp  Y   p+
  MMETSP1061-20121228|42449_1  54 LSHLPVLsnAHLAAQEKINRELFVGNTPPGTSEMLLLQFLNGAMRRVSLCGKQ-ETPILNCRVN--SKFAFVELVNAEMANKALNLNGIPFLGAVLKVSRPSKYA-GPH 158
                  4444444324445567889****************************999888.5567777777..69************************************8.333 PP

  == domain 3    score: 53.0 bits;  conditional E-value: 6.4e-18
    TIGR01642 167 aveqqatrkaRrlyvgniPpeakeeavvdFfndlllavgkdkaedgkavkaviinkdkkFaflEfrtveeatlalaldsiiyenvslkirRphdYiPvpea 267
                   ++ + ++  R l+vgn  pe++e  + +F+ + +  vg +  + g++++a  +    kFaf+E+r++eea +al+l+ i++ +  l+++Rp  ++ +p+ 
  MMETSP1061-20121228|42449_1 177 ILDAEQEKITRELFVGNTTPEMTERMLREFLGNAMEQVGLNVMP-GNPITACRVS--GKFAFVELRSPEEAANALNLNNIPFMGAQLRVGRPSKWNGPPDN 274
                  4577888999*******************************999.*****99986..69************************************988864 PP

  == domain 4    score: 90.3 bits;  conditional E-value: 3.1e-29
    TIGR01642 408 kptkvvqLtnlvlaedllddeeYeeiledvkeeaskyGtlkniviPrpnkdrseteGvGKvFleyadvasaekAreelnGrkFekrvvvaafysedkykkgdy 510
                  ++t+vv L+n+++++dl ++eeY++++ed ++e+s+yG+l n+ iP+         G  KvFleya+ ++a+kA + l+Gr F+++ v a+f++e k+ ++d+
  MMETSP1061-20121228|42449_1 309 RATRVVELKNMLTEDDLAVEEEYNDLIEDTQQECSQYGQLLNVFIPKK-----GEVGASKVFLEYASTDDASKAVKALEGRTFDGQRVQATFFDETKFINKDF 406
                  78*********************************************9.....5679*****************************************99987 PP

>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3     0.028        19      27      38 ..       8      19 ..       2      32 .. 0.62
   2 !    6.7   0.0   0.00097      0.66     262     297 ..     118     152 ..      67     179 .. 0.70
   3 !   20.3   0.0   7.4e-08   5.1e-05     163     295 ..     119     264 ..     106     274 .. 0.77
   4 !   45.9   0.1   1.2e-15   8.5e-13     395     490 ..     302     398 ..     279     405 .. 0.83

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.028
    TIGR01622 27 rersRdrsrdRe 38
                 r+rsR+rsr+R+
  MMETSP1061-20121228|42449_1  8 RQRSRSRSRERD 19
                 444444444443 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.00097
    TIGR01622 262 GyGFiqFsdaeeakeAleklNGlelAGReikvglas 297
                   + F++ ++ae a +Al +lNG+   G  +kv+  s
  MMETSP1061-20121228|42449_1 118 KFAFVELVNAEMANKAL-NLNGIPFLGAVLKVSRPS 152
                  37888888888888887.488888888888888654 PP

  == domain 3    score: 20.3 bits;  conditional E-value: 7.4e-08
    TIGR01622 163 vaYvEFydvesvqlAlaltGqkllgvPvivq.ase.AEKNraakaatelsg.........dipnsiadlkLYvGnlhfnitEqeLrqiF.epFGeielvqlqkDpetGrsk..G.yGFiqFsdaeeakeAleklNGlelAGReikvgl 295
                   a+vE ++ e  ++Al+l+G  +lg  ++v  +s+ A     a++ ++l+g         d  +   ++ L+vGn   ++tE +Lr+   ++  ++ l  ++ +p t  ++  G + F++ +  eea +Al +lN +   G +++vg 
  MMETSP1061-20121228|42449_1 119 FAFVELVNAEMANKALNLNGIPFLGAVLKVSrPSKyAGPHVPAQTWQQLTGqslpagtilDAEQEKITRELFVGNTTPEMTERMLREFLgNAMEQVGLNVMPGNPIT-ACRvsGkFAFVELRSPEEAANAL-NLNNIPFMGAQLRVGR 264
                  599***********************99996234324444444444444446666677775666667899****************976367777776667778877.44422458899999999999998.5899999*******97 PP

  == domain 4    score: 45.9 bits;  conditional E-value: 1.2e-15
    TIGR01622 395 sfvpsevnlaseclvLsNmFdpateeeenfdkeikdDvkeEcskkggvvhiyvdkknsaG..kvYlkfdsveaalaavkalngRyFagklitAafvvk 490
                  + +++ +  a++ + L+Nm   +    e+  +++ +D ++Ecs++g+  ++++ kk   G  kv+l + s ++a +avkal+gR F g+ ++A+f  +
  MMETSP1061-20121228|42449_1 302 AAMNA-NVRATRVVELKNMLTEDDLAVEEEYNDLIEDTQQECSQYGQLLNVFIPKKGEVGasKVFLEYASTDDASKAVKALEGRTFDGQRVQATFFDE 398
                  34443.5579**********995555445568999*******************998766448*******************************9765 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.1     0.024        16     148     183 ..     118     153 ..     113     163 .. 0.83
   2 !    7.6   0.0   0.00043      0.29     110     183 ..     191     267 ..     159     272 .. 0.72
   3 !   33.1   0.3   8.2e-12   5.6e-09     509     604 ..     310     405 ..     301     407 .] 0.81

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.024
    TIGR01645 148 gfafveev.PeaallaleqmngallGGrnlkvgrPsn 183
                   fafve v  e a  al ++ng  + G  lkv+rPs 
  MMETSP1061-20121228|42449_1 118 KFAFVELVnAEMANKAL-NLNGIPFLGAVLKVSRPSK 153
                  6*****77257788777.5899999999*******96 PP

  == domain 2    score: 7.6 bits;  conditional E-value: 0.00043
    TIGR01645 110 vGsisfelkedtlrrafdPfGPiksin.msWdpvtqkh..kgfafve.evPeaallaleqmngallGGrnlkvgrPsn 183
                  vG    e+ e +lr+ +        +n m  +p+t       fafve   Pe a  al+  n  ++G   l+vgrPs 
  MMETSP1061-20121228|42449_1 191 VGNTTPEMTERMLREFLGNAMEQVGLNvMPGNPITACRvsGKFAFVElRSPEEAANALNLNNIPFMG-AQLRVGRPSK 267
                  555555666666665544333222333266677776541146*****99*********977777776.67******95 PP

  == domain 3    score: 33.1 bits;  conditional E-value: 8.2e-12
    TIGR01645 509 esrvivlrnmvtPkdi..d...etlegeireecgkfgvvdrviiyqekqgeeedaeilvkifvefsasaevdrakealdGrffgGrkvvaev.dqelfdqad 604
                   +rv+ l+nm+t +d+  +   ++l ++ ++ec+++g +  v i   k+ge        k+f+e++ + ++++a +al+Gr f G++v+a   d + f + d
  MMETSP1061-20121228|42449_1 310 ATRVVELKNMLTEDDLavEeeyNDLIEDTQQECSQYGQLLNVFIP--KKGEV----GASKVFLEYASTDDASKAVKALEGRTFDGQRVQATFfDETKFINKD 405
                  468999********9633422246778999*******98777664..55522....257*******************************998999998887 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   9.6e-07   0.00065     218     344 ..     116     249 ..      64     262 .. 0.78
   2 !   10.1   0.0    0.0001     0.068     196     245 ..     339     387 ..     324     398 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 9.6e-07
    TIGR01628 218 krgfafvnyekaedAkkAveelngkkitlaa...tgkilyVgraqkraeReaelkakfeelkqerkekaq.gvNlYvkNlddtvddekLrelFeefGeitSakvm....ldekekSkgFGFVcfssqeeAnkAvt 344
                  +  fafv+  +ae A+kA+ +lng  +  a    +    y g++ + +  +++  +     ++   e+++    l+v N  +++++ +Lre   +  e +  +vm    + + ++S  F FV   s+eeA +A++
  MMETSP1061-20121228|42449_1 116 NSKFAFVELVNAEMANKAL-NLNGIPFLGAVlkvSRPSKYAGPHVPAQTWQQLTGQSLPAGTILDAEQEKiTRELFVGNTTPEMTERMLREFLGNAMEQVGLNVMpgnpITACRVSGKFAFVELRSPEEAANALN 249
                  345***************9.699999872222123344577777777777777777766666655555551679*******************************433334679999****************96 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.0001
    TIGR01628 196 relFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkit 245
                  ++  +++G+++ + + k  +  + +  f++y++++dA kAv +l+g+ ++
  MMETSP1061-20121228|42449_1 339 QQECSQYGQLLNVFIPKKGEVGA-SKVFLEYASTDDASKAVKALEGRTFD 387
                  56679999999999977766553.56799***************999886 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   5.3e-05     0.036     257     344 ..      60     150 ..       8     157 .. 0.80
   2 ?    3.1   0.0     0.019        13     267     331 ..     184     252 ..     151     267 .. 0.67
   3 !    4.7   0.0    0.0061       4.2     290     343 ..     343     394 ..     277     401 .. 0.68

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 5.3e-05
    TIGR01661 257 aagaqiaasdgagycifvynlspdtdeavlqlfgpfGavqsvkiirdlttn..kck...GygfvsmtnydeaalailslnGytlgnrvlqvsf 344
                   ++a++aa++     +fv n  p t e +l  f   Ga++ v +    +t   +c+    ++fv + n + a +a+  lnG  + + vl+vs 
  MMETSP1061-20121228|42449_1  60 LSNAHLAAQEKINRELFVGNTPPGTSEMLLLQFL-NGAMRRVSLCGKQETPilNCRvnsKFAFVELVNAEMANKAL-NLNGIPFLGAVLKVSR 150
                  356677778888889************9985554.49******99777664336763336********99998887.6***********9986 PP

  == domain 2    score: 3.1 bits;  conditional E-value: 0.019
    TIGR01661 267 gagycifvynlspdtdeavl.qlfgpfGavqsvkiirdlttnkck..G.ygfvsmtnydeaalailsln 331
                       +fv n +p+  e +l  ++g+    + + ++       c+  G ++fv +   +eaa+a++  n
  MMETSP1061-20121228|42449_1 184 KITRELFVGNTTPEMTERMLrEFLGNAMEQVGLNVMPGNPITACRvsGkFAFVELRSPEEAANALNLNN 252
                  34557999999999999999444455555555677776666666533359**************86444 PP

  == domain 3    score: 4.7 bits;  conditional E-value: 0.0061
    TIGR01661 290 gpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvs 343
                  +++G + +v i +  +    k   f+  +  d+a +a+++l+G t+ ++ +q +
  MMETSP1061-20121228|42449_1 343 SQYGQLLNVFIPKKGEVGASK--VFLEYASTDDASKAVKALEGRTFDGQRVQAT 394
                  555555555555554444444..3455555566666666666666655555555 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.56   3.8e+02     151     182 ..     119     149 ..     107     157 .. 0.82
   2 ?    4.0   0.0      0.01       7.1     195     306 ..     188     308 ..     179     335 .. 0.61
   3 ?    5.1   0.0    0.0048       3.3     152     183 ..     364     395 ..     355     399 .. 0.90

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.56
    TIGR01659 151 yafvdfaseadsqraikslngitvrnkrlkvs 182
                  +afv++     + +a+ +lngi      lkvs
  MMETSP1061-20121228|42449_1 119 FAFVELVNAEMANKAL-NLNGIPFLGAVLKVS 149
                  7999998777788887.59***9999999998 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.01
    TIGR01659 195 nlyvtnlprtitddqldtifgkygsivqknilrdkltgkpr..g.vafvrfnkreeaqeaisalnnvipeggsqpltvrla......eehgkaka..ahymsklglikygeygtgnggvaggs 306
                  +l+v n +  +t+  l   +g   + v  n++        r  g  afv     eea +a+  lnn ip  g+q    r +      ++hg      a+yms   + ++   g g++++++++
  MMETSP1061-20121228|42449_1 188 ELFVGNTTPEMTERMLREFLGNAMEQVGLNVMPGNPITACRvsGkFAFVELRSPEEAANALN-LNN-IPFMGAQLRVGRPSkwngppDNHGNWEDvlAKYMSGELQAGNTAPGQGAAAMNANV 308
                  68899999999999999999999999999999877655555223368999988898888874.666.78877887666766111111344443321134444222222333333333333333 PP

  == domain 3    score: 5.1 bits;  conditional E-value: 0.0048
    TIGR01659 152 afvdfaseadsqraikslngitvrnkrlkvsy 183
                   f+++as  d+ +a+k+l+g t   +r++ ++
  MMETSP1061-20121228|42449_1 364 VFLEYASTDDASKAVKALEGRTFDGQRVQATF 395
                  699*********************99998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.27
# Mc/sec: 1989.61
//
Query:       MMETSP1061-20121228|42453_1  [L=2784]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (2784 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       144  (0.0351048); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.00u 0.14s 00:00:01.14 Elapsed: 00:00:00.60
# Mc/sec: 6124.29
//
Query:       MMETSP1061-20121228|42480_1  [L=281]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0099   12.8   0.4       0.63    6.8   0.0    2.1  2  TIGR00984 3a0801s03tim44: mitochondrial import inner membrane, translocase subunit


Domain annotation for each model (and alignments):
>> TIGR00984  3a0801s03tim44: mitochondrial import inner membrane, translocase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.1   0.2     0.001       4.2     166     229 ..     111     180 ..      23     191 .. 0.64
   2 !    6.8   0.0   0.00015      0.63      86     144 ..     219     275 ..     205     278 .. 0.86

  Alignments for each domain:
  == domain 1    score: 4.1 bits;  conditional E-value: 0.001
    TIGR00984 166 avvlh.kdskw.kkkvkdfkeenvvvrkllelkkkydEsenvlvrviRkltdkvggvlsgl.....fsetE 229
                  +v  + kd++  k +v++ + en + ++++el+  +d  e++  +++++  d v+  ++++     fs++E
  MMETSP1061-20121228|42480_1 111 DVHCErKDQSVqKTGVEETSVEN-LKKEFQELQSTWDRYEELSKSMMKARGDGVAANFTQFgvgcsFSDNE 180
                  33333133333134556655544.67899999999999999999999999999988777643333356555 PP

  == domain 2    score: 6.8 bits;  conditional E-value: 0.00015
    TIGR00984  86 aeaaktakkaaekvdksaekvretavykevsqsvedvkeesdegvladkeqrrrkeele 144
                  +e+ak    ++e+v    +++ + a++ +v+  v++v   sd + la k+  +r+++++
  MMETSP1061-20121228|42480_1 219 DETAKGSCPSSEGVGSKQKPLIDDAMFVHVESPVSSV--MSDASNLAGKRDSSRRRRKT 275
                  6889999999***************************..56666699999888888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (281 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1612.56
//
Query:       MMETSP1061-20121228|42487_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 1011.92
//
Query:       MMETSP1061-20121228|42500_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.0   0.2      0.046   10.9   0.0    1.5  2  TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated


Domain annotation for each model (and alignments):
>> TIGR04123  P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0     0.085   3.5e+02      22      30 ..      31      39 ..      13      47 .. 0.70
   2 ?   10.9   0.0   1.1e-05     0.046      83     110 ..      65      92 ..      50      95 .] 0.81

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.085
    TIGR04123 22 rlLvvaDlH 30
                  l++++D H
  MMETSP1061-20121228|42500_1 31 TLVCISDTH 39
                 455677777 PP

  == domain 2    score: 10.9 bits;  conditional E-value: 1.1e-05
    TIGR04123  83 rlelealaelrelaaglevvlveGNHDr 110
                  r+++e+++++  + +  ++++++GNH++
  MMETSP1061-20121228|42500_1  65 REDAEDFNAWLGTLSYQHILVIQGNHEA 92 
                  56799********9************94 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 626.95
//
Query:       MMETSP1061-20121228|42515_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-12   42.6   0.0    3.5e-12   42.6   0.0    1.0  1  TIGR00956 3a01205: pleiotropic drug resistance family protein
    1.8e-09   34.6   0.0    1.9e-09   34.4   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease


Domain annotation for each model (and alignments):
>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0   1.7e-15   3.5e-12     235     295 ..       2      62 ..       1      64 [] 0.96

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 1.7e-15
    TIGR00956 235 natrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGkqiyfGka 295
                  +++ GLD+  ++e++ a+  + ++ ++  +++++q+s+++  lFd++++l eGk++y G+ 
  MMETSP1061-20121228|42515_1   2 EISNGLDAESTFEIITAMGYIGKVREKLQVISLLQPSPETLSLFDEIILLAEGKILYAGPV 62 
                  6899******************************************************985 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0   9.5e-13   1.9e-09     195     251 ..       5      62 ..       2      64 .] 0.91

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 9.5e-13
    TIGR00955 195 sGLDsfsaasvvkvLkklaqkg.ktviltiHQPsselfelfdkiillaeGrvvylGsp 251
                   GLD+ s ++++ ++  + + + k  ++++ QPs e  +lfd+iillaeG++ y G +
  MMETSP1061-20121228|42515_1   5 NGLDAESTFEIITAMGYIGKVReKLQVISLLQPSPETLSLFDEIILLAEGKILYAGPV 62 
                  69****************9865267899****************************75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 444.59
//
Query:       MMETSP1061-20121228|42504_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.7e-122  406.1   1.5   2.2e-122  405.7   1.1    1.1  1  TIGR03182 PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    1.2e-65  219.5   0.1    1.6e-65  219.1   0.1    1.1  1  TIGR03181 PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
    3.2e-09   33.1   0.0    4.4e-09   32.6   0.0    1.1  1  TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
  ------ inclusion threshold ------
      0.013   11.8   0.1      0.034   10.5   0.0    1.5  2  TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase


Domain annotation for each model (and alignments):
>> TIGR03182  PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  405.7   1.1  2.2e-125  2.2e-122       1     315 []      57     375 ..      57     375 .. 0.98

  Alignments for each domain:
  == domain 1    score: 405.7 bits;  conditional E-value: 2.2e-125
    TIGR03182   1 keellelyremlliRrfEekaaqlYkkgkigGfvHlyiGqEAvavgleaalkeddsvitsYRdHghalaagveakevmaEllgketGvskGkGGsmHlfdkekkflGGhgivgaqvplatGlafaekyk....kedevtlaffGdgavnqGqvyEslnlaalwklPvifviennkyamGtaverssaekdlakkgesfgikglevdGmdvlavreaakeavervragkgPvllelktyRfrgHslsDpa.kyRskeeveevk.krdpieklkkaliekgllseeelkeiekevkaeveeavefaeespepdveeLlkdvya 315
                  keel++++++m+++Rr+E ++++ Yk+ +i+Gf+Hly GqEAva+g+++al+++ds +tsYR+H++ l++g ++  v+ El+gk++Gv+kGkGGsmH+++ke++f+GGhgivgaqvp+++Glafa+ky+    +  +v++a++Gdga+nqGq++E+ n+++lw lP+if+ienn+y+mGt+++r+s+ +d++k g++  i+gl++dGm+vlav+e +k a ++v +g+gP+ +e+ tyR++gHs+sDp  +yR++ee+e ++ +rdpie++k+ l e+g+++ ee+k+ ek +++ev++ v++a+e p p+ +++++d+ya
  MMETSP1061-20121228|42504_1  57 KEELIDIFETMYTMRRMEITCDNEYKARNIRGFCHLYDGQEAVATGIQTALDKEDSWVTSYRCHVLSLIRGGTVAGVIGELFGKSQGVTKGKGGSMHMYSKENNFFGGHGIVGAQVPIGAGLAFAHKYNakpgQPMNVAIACYGDGAANQGQIWEAANMSNLWDLPMIFCIENNHYGMGTSIDRHSSISDYYKMGNA--IPGLRIDGMNVLAVTEGMKFAKDYVGNGNGPMYVEMMTYRYHGHSMSDPGtTYRNREEIEFTRtNRDPIEHVKACLQEAGFMTAEEIKDTEKRIRKEVQKEVKKAKEWPVPKPSDVVEDIYA 375
                  6899*****************************************************************************************************************************66655579**********************************************************87..*************************************************979***********9********************************************************96 PP

>> TIGR03181  PDH_E1_alph_x: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  219.1   0.1   1.5e-68   1.6e-65      15     329 ..      49     376 ..      35     383 .. 0.90

  Alignments for each domain:
  == domain 1    score: 219.1 bits;  conditional E-value: 1.5e-68
    TIGR03181  15 eelaaklseeelvelyremvltRrldekalalqRqGrlgtya.pllGqEAaqvgsalalrkeDvlvpsYRdaaallarGvk....leeillywrgdekgsklp.....eevnilpinvpigtqvlhAaGvAlalklkgek....evavayiGdGgtsegdfyealnfAavfkapvvfvvqNNqwAISvprskqtaaktlaqkavaagipgvqvDGnDvlAvyevvkealekArkgegPtLiEavtYRlgaHttaDdptrYrskeeee.ewkkkdPiarlrkyLeekglldeekeeeleeeaeeevkeaveeveelpkpkvedlfdnvYae 329
                  ++ +a++s+eel++++++m ++Rr++  + +  +   +  +     GqEA+  g+++al+keD  v+sYR + + l+rG +    + e++  ++g +kg+  +     +e n++  + ++g+qv+  aG+A+a k++ ++    +va+a+ GdG++ +g + ea n++ ++++p++f+++NN++ + ++ ++ +  ++ ++  ++  ipg+++DG+ vlAv e +k a ++  +g+gP+ +E++tYR+  H+++D  t Yr++ee e + +++dPi+ +++ L+e+g+++ e+ +  e+++++ev+++v++++e p pk++d+++++Ya+
  MMETSP1061-20121228|42504_1  49 PSETAEVSKEELIDIFETMYTMRRMEITCDNEYKARNIRGFChLYDGQEAVATGIQTALDKEDSWVTSYRCHVLSLIRGGTvagvIGELFGKSQGVTKGKGGSmhmysKENNFFGGHGIVGAQVPIGAGLAFAHKYNAKPgqpmNVAIACYGDGAANQGQIWEAANMSNLWDLPMIFCIENNHYGMGTSIDRHSSISDYYK--MGNAIPGLRIDGMNVLAVTEGMKFAKDYVGNGNGPMYVEMMTYRYHGHSMSDPGTTYRNREEIEfTRTNRDPIEHVKACLQEAGFMTAEEIKDTEKRIRKEVQKEVKKAKEWPVPKPSDVVEDIYAK 376
                  5677899*******************99999989889966651568*********************************99333334555555665555432244566889**************************97444459****************************************************8877..66779***********************************************************99999********************************************************97 PP

>> TIGR00239  2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   4.3e-12   4.4e-09     327     519 ..     174     361 ..     160     391 .. 0.80

  Alignments for each domain:
  == domain 1    score: 32.6 bits;  conditional E-value: 4.3e-12
    TIGR00239 327 iGsvrarlerkndlkektkvlailihGdaavaGqGvvqetlnlsklkgysvGGtiriiinnqiGfttepaearstkyasdlakaie.aPivhvnaddpeavafvvklaveyrkkfkkdvlidlvgyrrhGhneadePsatqPll..ykkikkhptsrkvyadklvkegvvteedvdevanlyrdalekakqvvpsk 519
                  iG   a  ++ n  + +   +ai  +Gd a a qG + e+ n+s+l +      i  i nn  G+ t      s    sd  k+ + +P + +++ ++ av+  +k+a +y  + +  + +++++yr hGh   d P +t       +  + ++ +++     l + g +t e++++ ++ +r+ ++k  ++  ++
  MMETSP1061-20121228|42504_1 174 IGAGLAFAHKYNAKPGQPMNVAIACYGDGA-ANQGQIWEAANMSNLWDLP---MIFCIENNHYGMGTSIDRHSS---ISDYYKMGNaIPGLRIDGMNVLAVTEGMKFAKDYVGNGNGPMYVEMMTYRYHGHSMSD-PGTTYRNReeIEFTRTNRDPIEHVKACLQEAGFMTAEEIKDTEKRIRKEVQKEVKKAKEW 361
                  666677778888888888999*******99.689************9986...6999********996554444...46666765427*******************************************8665.7777543301334455555666677789999**********9999999888776666555 PP

>> TIGR00204  dxs: 1-deoxy-D-xylulose-5-phosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   3.3e-05     0.034     108     179 ..     161     238 ..     145     251 .. 0.72
   2 ?   -2.2   0.0      0.22   2.3e+02     245     282 ..     259     300 ..     255     306 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 3.3e-05
    TIGR00204 108 lsaGhs..stsisaglGiavaaelkga..d..ekvvaviGdGaltaGmalealnhaGdlkkdllvilndnemsisenv 179
                  +  Gh    + + +g G+a a++ + +  +  +  +a  GdGa   G ++ea n       +++  +++n   + + +
  MMETSP1061-20121228|42504_1 161 FFGGHGivGAQVPIGAGLAFAHKYNAKpgQpmNVAIACYGDGAANQGQIWEAANMSNLWDLPMIFCIENNHYGMGTSI 238
                  455554114566777777777766554113113456668***************99999999*999999987766655 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.22
    TIGR00204 245 vdGhdlselietlknakkl....kgPvllhvktkkGkGykla 282
                  +dG ++ ++ e +k ak+     +gP+++ ++t + +G++++
  MMETSP1061-20121228|42504_1 259 IDGMNVLAVTEGMKFAKDYvgngNGPMYVEMMTYRYHGHSMS 300
                  899999999999999997533336899999999998888765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 1894.99
//
Query:       MMETSP1061-20121228|42521_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|42511_1  [L=782]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (782 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.28
# Mc/sec: 3559.15
//
Query:       MMETSP1061-20121228|42530_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0061   13.6   3.9     0.0079   13.2   2.7    1.2  1  TIGR00219 mreC: rod shape-determining protein MreC
  ------ inclusion threshold ------
      0.011   12.2   4.4      0.013   11.9   3.1    1.1  1  TIGR03545 TIGR03545: TIGR03545 family protein


Domain annotation for each model (and alignments):
>> TIGR00219  mreC: rod shape-determining protein MreC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   2.7   3.9e-06    0.0079      73     133 ..      64     125 ..      32     140 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 3.9e-06
    TIGR00219  73 leNkklrqellkknaqlelltqelkqENkrLrelLnsvlssdeyk..ivaevialetdnyskq 133
                   +  + +++l ++ a le ++qe++q N+ ++++Ln      e+k   +a+v+  + +  +kq
  MMETSP1061-20121228|42530_1  64 RKAAAYKEHLEQR-ATLERKLQEYRQQNETVQNQLNERIEGMEDKftDMANVVEYDMNRLAKQ 125
                  4455566666666.9*********************998888777567899999998888887 PP

>> TIGR03545  TIGR03545: TIGR03545 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   3.1   6.1e-06     0.013     188     273 ..      46     128 ..      34     154 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.1e-06
    TIGR03545 188 pnkqdleeykkrlealkeadiknpkelqkaleeldkvkkeikadkqkiksakndlqkdlkqlkaqlaelkkapqkDlkrleekyal 273
                   n+q ++   k++e++ e +   +ke    le+   +   +++ +q+ +  +n+l++ ++ ++ +  ++ + ++ D++rl+++y  
  MMETSP1061-20121228|42530_1  46 QNEQVVKMFGKQMEKIGERKAAAYKE---HLEQRATLERKLQEYRQQNETVQNQLNERIEGMEDKFTDMANVVEYDMNRLAKQYLK 128
                  5688899999*********9999995...55555556667777888888899******************************8854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       438  (0.106777); expected 82.0 (0.02)
Passed bias filter:                      176  (0.0429059); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.11s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|42528_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.10s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2397.80
//
Query:       MMETSP1061-20121228|42529_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1773.24
//
Query:       MMETSP1061-20121228|42532_1  [L=304]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (304 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1823.85
//
Query:       MMETSP1061-20121228|42534_1  [L=268]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-07   28.0   0.0    7.3e-07   27.1   0.0    1.5  1  TIGR00586 mutt: mutator mutT protein
     0.0026   15.1   0.2     0.0052   14.2   0.1    1.4  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD


Domain annotation for each model (and alignments):
>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   3.6e-10   7.3e-07      19     113 ..     122     214 ..     116     233 .. 0.75

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 3.6e-10
    TIGR00586  19 ifitrraadadlanklefPGGkieaGetpeqavvrelqeevgitaqhfelfekleyeyp...qkkltlyvylvrelegepfikegeegewvavreLde 113
                  +++ rr   +++a      GG +e+Get++++v rel ee+++t +h   +  + y+ p   +++ t+ + +v + +++++ ++g++++ v+ + +de
  MMETSP1061-20121228|42534_1 122 VWLVRRKDTNQFAT----MGGFVEVGETTDETVARELAEEMSLTLEHPPRLFGV-YSDPrrdNRRHTVSIVFVAHVSDDIQPTAGDDAKEVVKVPVDE 214
                  66777777777766....59************************9998666554.444412267889999999999****999999888777655554 PP

>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.5e-06    0.0052      44      74 ..     130     160 ..     117     197 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.5e-06
    TIGR02705  44 kRGlefPGGkveegetskeaaiRevleetGa 74 
                  +  +   GG ve get+ e ++Re+ ee   
  MMETSP1061-20121228|42534_1 130 TNQFATMGGFVEVGETTDETVARELAEEMSL 160
                  55555679********************765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (268 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1537.96
//
Query:       MMETSP1061-20121228|42533_1  [L=294]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.014   12.3   0.1      0.021   11.7   0.0    1.2  1  TIGR03404 bicupin_oxalic: bicupin, oxalate decarboxylase family
      0.024   12.5   0.0      0.039   11.8   0.0    1.2  1  TIGR03037 anthran_nbaC: 3-hydroxyanthranilate 3,4-dioxygenase
       0.34    8.8   5.7       0.48    8.3   4.0    1.2  1  TIGR02205 septum_zipA: cell division protein ZipA
       0.68    7.2  15.9       0.99    6.7  11.0    1.2  1  TIGR02223 ftsN: cell division protein FtsN
        2.9    4.8   8.3        3.6    4.5   5.8    1.1  1  TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
          8    2.5  12.5         10    2.2   8.6    1.1  1  TIGR02442 Cob-chelat-sub: cobaltochelatase subunit
          9    2.6  14.4         12    2.2  10.0    1.1  1  TIGR01651 CobT: cobaltochelatase, CobT subunit


Domain annotation for each model (and alignments):
>> TIGR03404  bicupin_oxalic: bicupin, oxalate decarboxylase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   3.6e-05     0.021      80     130 ..     194     244 ..     185     255 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 3.6e-05
    TIGR03404  80 RelhWhkeaeWayvlkGsvritavdeegrsyvddveaGDlwyFpkGvphsl 130
                   e h h + e  y+l+Gs    + d+e +++   +++GDl   p+G+ h  
  MMETSP1061-20121228|42533_1 194 FEEHIHDAEEIRYILDGSGYFDIRDKEDKWIRIWIKKGDLMTLPEGCYHRF 244
                  577********************************************9976 PP

>> TIGR03037  anthran_nbaC: 3-hydroxyanthranilate 3,4-dioxygenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   6.7e-05     0.039      44      88 ..     197     242 ..     189     251 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 6.7e-05
    TIGR03037  44 hvdeseeffyqlkGemvlkvle.eGkvedvpireGdifllppkvph 88 
                  h+ ++ee+ y l+G  ++ + + e k  ++ i++Gd++ lp    h
  MMETSP1061-20121228|42533_1 197 HIHDAEEIRYILDGSGYFDIRDkEDKWIRIWIKKGDLMTLPEGCYH 242
                  9999***************998357889*************98877 PP

>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   4.0   0.00082      0.48      35     110 ..       8      87 ..       2     146 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.00082
    TIGR02205  35 kkklkraklksdddsseelvedde.veevrverv...eheipqpseqkepsiseavdkerkksvedeeasvpaqpvqqql 110
                  ++++  ++++++ +++ + v+++    +++ +     e+e+ + ++++ ps +++++ke++k++++  + ++   +  ++
  MMETSP1061-20121228|42533_1   8 QEHRVTMSTEEEAKPQTDTVAEETpAADTKDDSTateEPEAKKQKTEDAPSAATTEAKEDEKKEDKDTMTAEESKTGSEY 87 
                  45566678888888888999888878888887775556666667777889999999988877777777777643333333 PP

>> TIGR02223  ftsN: cell division protein FtsN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.7  11.0    0.0017      0.99     135     204 ..      16      84 ..       8     115 .. 0.78

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.0017
    TIGR02223 135 kklatadseqtvavearkqtaekkkqkartaeakktkvetekkaskekeakkkqkalkkktaekqsnskp 204
                  +++   ++++tva+e +  + +  + + +  eakk k e +++a ++ eak+ +k++ k t+   + +  
  MMETSP1061-20121228|42533_1  16 TEEEAKPQTDTVAEETPAADTKDDSTATEEPEAKKQKTEDAPSA-ATTEAKEDEKKEDKDTMTAEESKTG 84 
                  5667789999999999999999999788****************.8*************99987553333 PP

>> TIGR01347  sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   5.8    0.0062       3.6      82     156 ..      13      86 ..       3     119 .. 0.65

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.0062
    TIGR01347  82 eaasekskeekeekaaakaekakeaaekkkalspaarklakeegidleavektkktgrvtkedivkkeekkasaa 156
                  + ++e++++ + +++a+++ +a ++++++++ +p a+k  +e+++++++ e + +++++  +d++ +ee+k+ ++
  MMETSP1061-20121228|42533_1  13 TMSTEEEAKPQTDTVAEETPAADTKDDSTATEEPEAKKQKTEDAPSAATTEAK-EDEKKEDKDTMTAEESKTGSE 86 
                  45556666666777777777788888888888899999888888877776664.445555556665555553333 PP

>> TIGR02442  Cob-chelat-sub: cobaltochelatase subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   8.6     0.018        10     307     387 ..       9      91 ..       7     115 .. 0.59

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.018
    TIGR02442 307 khRrrrkpfeeeqekeekkleekkeeakpdeekedes..eekekeeskkqeeeepgkddekeedekeeaeeeaesaeevalep 387
                  +hR++ ++ ee++ + +  +ee+++++++d ++  e+  ++k+k+e+ ++ ++++ k+dek+ed+   + ee+++ +e +++p
  MMETSP1061-20121228|42533_1   9 EHRVTMSTEEEAKPQTDTVAEETPAADTKDDSTATEEpeAKKQKTEDAPSAATTEAKEDEKKEDKDTMTAEESKTGSEYPMAP 91 
                  58888888888766666666666666665555554442222333333333355555555555555555555555555555554 PP

>> TIGR01651  CobT: cobaltochelatase, CobT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2  10.0     0.021        12     213     281 ..      15      82 ..       5     106 .. 0.69

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.021
    TIGR01651 213 edtdddqpredeqeeegeeeeegdeasaaeeaeaaeeeeesgeeeaaeadddd.lsdeddedaetpgeak 281
                  + +++ +p+ d   ee+   +++d+++a+ee ea ++++e++   a+  +++d +++++d    t  e+k
  MMETSP1061-20121228|42533_1  15 STEEEAKPQTDTVAEETPAADTKDDSTATEEPEAKKQKTEDAPSAATTEAKEDeKKEDKDT--MTAEESK 82 
                  5678899***************************999999887666544444404444443..3333333 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (294 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        28  (0.00682594); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.23u 0.18s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 1552.19
//
Query:       MMETSP1061-20121228|42531_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-45  153.1   0.0    1.5e-19   68.2   0.0    3.0  3  TIGR01622 SF-CC1: splicing factor, CC1-like family
    4.3e-28   95.9   0.0    6.9e-09   32.5   0.0    3.2  3  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
    5.6e-27   92.9   0.0    1.6e-25   88.1   0.0    2.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
    1.2e-19   68.9   0.0      5e-08   30.7   0.0    3.2  3  TIGR01661 ELAV_HUD_SF: ELAV/HuD family splicing factor
      2e-16   57.7   0.0      8e-14   49.1   0.0    2.1  2  TIGR01645 half-pint: poly-U binding splicing factor, half-pint family
    1.3e-12   45.8   0.0    4.4e-05   21.1   0.0    2.8  2  TIGR01659 sex-lethal: sex-lethal family splicing factor
    1.8e-07   28.1   0.1     0.0016   15.1   0.0    2.6  2  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.4   0.0   2.3e-12   1.3e-09     209     298 ..      35     130 ..      24     146 .. 0.82
   2 !   46.6   0.0   9.3e-16   5.4e-13     217     294 ..     148     222 ..     131     230 .. 0.86
   3 !   68.2   0.0   2.5e-22   1.5e-19     218     298 ..     239     318 ..     226     330 .. 0.91

  Alignments for each domain:
  == domain 1    score: 35.4 bits;  conditional E-value: 2.3e-12
    TIGR01622 209 lsgdipnsiadlkLYvGnlhfnitEqeLrqiFepFG.eielvqlqk.....DpetG..rskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD 298
                   + + p  +  + +YvGnl f  t +e+ ++F   G ++ +v +++     D+etG  rskG+ F+     +  k A+ +lN +++ GR++ v  +  
  MMETSP1061-20121228|42531_1  35 EPTTEP--AERHTVYVGNLPFFTTQEEVSDLFTDNGiSVINVSMPMepdriDSETGkpRSKGFCFVDVASFDMIKTAIDALNAMDMNGRDLIVNKVVP 130
                  444555..78899*********************99668889987655555899**5569*******************************9988654 PP

  == domain 2    score: 46.6 bits;  conditional E-value: 9.3e-16
    TIGR01622 217 iadlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvg 294
                   +++kLYvGnl f+   +e++  Fe +Ge+ ++ +++ ++   s+G+ Fi+    e + eA+ +lNG +  GR++ v 
  MMETSP1061-20121228|42531_1 148 DGQKKLYVGNLPFEAEYDEIKAHFEQYGEVRDLYIPLRDDQ--SRGFCFITMD-DEASDEAMSQLNGADFMGRPLVVN 222
                  5789*******************************988775..9*******75.5899****************9885 PP

  == domain 3    score: 68.2 bits;  conditional E-value: 2.5e-22
    TIGR01622 218 adlkLYvGnlhfnitEqeLrqiFepFGeielvqlqkDpetGrskGyGFiqFsdaeeakeAleklNGlelAGReikvglasD 298
                   + kLYvGnl f  t + L ++Fe FGe+ +  l+ Dp+t + +G+GFi+  +a+    A+ +l Glel GR i+v  a+ 
  MMETSP1061-20121228|42531_1 239 KQFKLYVGNLSFYTTQETLTGVFEEFGEVFDCYLPTDPNTDQPRGFGFITMDQAD-GEVAISELDGLELDGRFIRVNEAQG 318
                  568***********************************************99886.6789****************99886 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   4.2e-11   2.5e-08     267     373 ..      14     128 ..       7     141 .. 0.81
   2 !   32.5   0.0   1.2e-11   6.9e-09     290     371 ..     144     222 ..     129     227 .. 0.88
   3 !   29.0   0.0   1.4e-10   8.1e-08     289     380 ..     233     323 ..     225     332 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 4.2e-11
    TIGR01642 267 atpevsqknsdinlkaveklvnsktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliK.......dlatGl..sKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrA 373
                  +  +vs    ++++      ++ +t + +++ +y+gnLP+  +++ v +L ++ G     n+         d++tG+  sKG++F++     + + Ai aLn +++ ++ L v + 
  MMETSP1061-20121228|42531_1  14 TVSAVSRAPVSVFMSELASESEPTTEPAERHTVYVGNLPFFTTQEEVSDLFTDNGI-SVINVSMpmepdriDSETGKprSKGFCFVDVASFDMIKTAIDALNAMDMNGRDLIVNKV 128
                  55667777778899999888999******************************993.44444211223333889995559*******************************99886 PP

  == domain 2    score: 32.5 bits;  conditional E-value: 1.2e-11
    TIGR01642 290 ktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvk 371
                  + ++d+++kly+gnLP++ + d +k   e++G+++   +   l + +s+G++F+  +d   +d A++ LnG +  ++ L v 
  MMETSP1061-20121228|42531_1 144 NFTPDGQKKLYVGNLPFEAEYDEIKAHFEQYGEVRDLYI--PLRDDQSRGFCFITMDDE-ASDEAMSQLNGADFMGRPLVVN 222
                  5579*******************************7665..78999********98775.6899*********999999886 PP

  == domain 3    score: 29.0 bits;  conditional E-value: 1.4e-10
    TIGR01642 289 sktvldsedklyignLPldlkddqvkeLLesFGdLkaFnliKdlatGlsKGyaFceykdssvtdlAiaaLnGiklgdkkLnvkrAtvgakqa 380
                  s+++  ++ kly+gnL ++ +++ +  + e+FG++    l  d +t + +G++F+   d  + ++Ai+ L+G++l ++ + v  A   ++++
  MMETSP1061-20121228|42531_1 233 SRGARPKQFKLYVGNLSFYTTQETLTGVFEEFGEVFDCYLPTDPNTDQPRGFGFITM-DQADGEVAISELDGLELDGRFIRVNEAQGKRRRP 323
                  556666778*********************************************985.8899********************9997665555 PP

>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.1   0.0   2.8e-28   1.6e-25      91     367 ..      46     322 ..      32     328 .. 0.81

  Alignments for each domain:
  == domain 1    score: 88.1 bits;  conditional E-value: 2.8e-28
    TIGR01628  91 ifvKnLdksidnkaLfdtFskfG.nilsckvat......deeGk..SkgYgfvhfedeesAkeAieklNgvllndkevyvgkfikksere...atkekkft.....NlYvKnlddsvtedklrelFakfGeitSaivkkdeknrkrgfafvnyekaedAkkAveelngkkitlaatgkilyVgraqkraeReaelkakfeelkqerkekaqgvNlYvkNlddtvddekLrelFeefGeitSakvmld.ekekSkgFGFVcfssqeeAnkAvtelhgkilngkPLyvalAqrkeqR 367
                  ++v nL+   +++ + d+F+  G +++ + + +       e+Gk  Skg+ fv+    +  k Ai+ lN++ +n ++ +v+k + k+e +    ++ k+ft      lYv nl+ + + d+++  F ++Ge+  + +    ++++rgf+f+  ++ e+  +A+ +lng ++     g+ l V    k+ e    l          r  + +   lYv Nl    ++e+L  +FeefGe+  + + +d ++++ +gFGF++  +  +   A++el+g  l+g+ + v+ Aq k  R
  MMETSP1061-20121228|42531_1  46 VYVGNLPFFTTQEEVSDLFTDNGiSVINVSMPMepdridSETGKprSKGFCFVDVASFDMIKTAIDALNAMDMNGRDLIVNKVVPKEELQkrsPNRGKNFTpdgqkKLYVGNLPFEAEYDEIKAHFEQYGEVRDLYIPLR-DDQSRGFCFITMDD-EASDEAMSQLNGADFM----GRPLVVNEPLKKGES---LPS--------RGARPKQFKLYVGNLSFYTTQETLTGVFEEFGEVFDCYLPTDpNTDQPRGFGFITMDQ-ADGEVAISELDGLELDGRFIRVNEAQGKRRR 322
                  556666666666666666666663233333322111111477754499************************************99886555567789999666667****************************99644.455679*****975.8999************....9*****999999887...322........233445567*********************************8899********9865.56789*******************9988766 PP

>> TIGR01661  ELAV_HUD_SF: ELAV/HuD family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   4.6e-07   0.00027     245     346 ..      19     129 ..       3     134 .. 0.75
   2 !   16.3   0.0   2.1e-06    0.0012      92     338 ..     153     217 ..     142     229 .. 0.54
   3 !   30.7   0.0   8.6e-11     5e-08     269     343 ..     240     314 ..     220     322 .. 0.78

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 4.6e-07
    TIGR01661 245 splaadgavaglaagaqiaasdgagycifvynlsp.dtdeavlqlfgpfG.avqsvkiir.....dlttn..kckGygfvsmtnydeaalailslnGytlgnrvlqvsfkt 346
                  s   +   ++ la++++ +++++  + ++v nl    t+e v  lf++ G +v +v +       d +t   + kG++fv ++ +d   +ai +ln + + +r l v  ++
  MMETSP1061-20121228|42531_1  19 SRAPVSVFMSELASESEPTTEPAERHTVYVGNLPFfTTQEEVSDLFTDNGiSVINVSMPMepdriDSETGkpRSKGFCFVDVASFDMIKTAIDALNAMDMNGRDLIVNKVV 129
                  444445566678888888888888999******8537889999*****99558899875412222444442268*****************************99887655 PP

  == domain 2    score: 16.3 bits;  conditional E-value: 2.1e-06
    TIGR01661  92 lyvsGlPktmtqkeleslfspfGkiitsrilsdnvtdlskGvGfirfdkreeadraikalnGttPsgatepitvkfannPsssnskallsdleavlnaqltrvprstiltaaaiaplhkaaakfrlsaldflavlakrlqqhavaqqaaaqrasplaadgavaglaagaqiaasdgagycifvynlspdtdeavlqlfgpfGavqsvki.irdlttnkckGygfvsmtnydeaalailslnGytlgnr 338
                  lyv  lP +   +e+ +                                                                                                                                                                                    f ++G v+++ i +rd    + +G++f++m + + +  a+  lnG  + +r
  MMETSP1061-20121228|42531_1 153 LYVGNLPFEAEYDEIKA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HFEQYGEVRDLYIpLRDD---QSRGFCFITMDD-EASDEAMSQLNGADFMGR 217
                  45555555555555555...................................................................................................................................................................................555555555555533443...555555555542.222345555555555555 PP

  == domain 3    score: 30.7 bits;  conditional E-value: 8.6e-11
    TIGR01661 269 gycifvynlspd.tdeavlqlfgpfGavqsvkiirdlttnkckGygfvsmtnydeaalailslnGytlgnrvlqvs 343
                   + ++v nls   t+e++  +f +fG v +  +  d++t++ +G+gf++m   d   +ai  l+G +l +r ++v 
  MMETSP1061-20121228|42531_1 240 QFKLYVGNLSFYtTQETLTGVFEEFGEVFDCYLPTDPNTDQPRGFGFITMDQAD-GEVAISELDGLELDGRFIRVN 314
                  578899999975155666699999999999999999999999999999998765.567999999999999988876 PP

>> TIGR01645  half-pint: poly-U binding splicing factor, half-pint family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.7   0.0   0.00095      0.56     236     280 ..      87     130 ..      61     142 .. 0.82
   2 !   49.1   0.0   1.4e-16     8e-14     110     276 ..     155     315 ..     151     326 .. 0.89

  Alignments for each domain:
  == domain 1    score: 6.7 bits;  conditional E-value: 0.00095
    TIGR01645 236 ptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGkavtP 280
                  +   + kGf f++ +     + ai ++n +d+ G+ l v k v P
  MMETSP1061-20121228|42531_1  87 TGKPRSKGFCFVDVASFDMIKTAIDALNAMDMNGRDLIVNKVV-P 130
                  4555679999999999999999999999999999999998866.4 PP

  == domain 2    score: 49.1 bits;  conditional E-value: 1.4e-16
    TIGR01645 110 vGsisfelkedtlrrafdPfGPiksinmsWdpvtqkhkgfafveevPeaallaleqmngallGGrnlkvgrPsnlpqaqpiidevqeeakkfnrivasvhpdlseedlksvfeafGeivkcklaraptlrkhkGfGflefenlqsqseaiasmnlfdlGGqllrvGk 276
                  vG + fe + d ++  f+ +G ++ + +       + +gf f+    ea+  a+ q+nga + Gr l v+ P   + + p         k+f+  v  +    ++e l  vfe fGe+ +c l  +p + + +GfGf+ ++++   + ai+ ++ ++l G+++rv  
  MMETSP1061-20121228|42531_1 155 VGNLPFEAEYDEIKAHFEQYGEVRDLYIPLR--DDQSRGFCFITMDDEASDEAMSQLNGADFMGRPLVVNEPLKKGESLPSRGA---RPKQFKLYVGNLSFYTTQETLTGVFEEFGEVFDCYLPTDPNTDQPRGFGFITMDQAD-GEVAISELDGLELDGRFIRVNE 315
                  99**********************8877553..46789**********************************999998886554...55667555********************************************66554.567****************965 PP

>> TIGR01659  sex-lethal: sex-lethal family splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.0   7.4e-08   4.4e-05     109     257 ..      45     211 ..       4     229 .. 0.74
   2 !   20.8   0.0   9.3e-08   5.5e-05     188     258 ..     235     304 ..     219     325 .. 0.83

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 7.4e-08
    TIGR01659 109 nlivnylpqdmtdrelyalfr..tigpintcrimr....dyktg..ysfgyafvdfaseadsqraikslngitvrnkrlkvsyarpggesik.............dtnlyvtnlprtitddqldtifgkygsivqkni.lrdkltgkprgvafvrfnkreeaqeaisalnn 257
                   + v  lp   t+ e+  lf    i  in    m     d  tg   s g++fvd as    + ai++ln + +  + l v    p  e  k             +  lyv nlp     d++++ f +yg++ +  i lrd    + rg  f+ ++  e ++ea+s ln 
  MMETSP1061-20121228|42531_1  45 TVYVGNLPFFTTQEEVSDLFTdnGISVINVSMPMEpdriDSETGkpRSKGFCFVDVASFDMIKTAIDALNAMDMNGRDLIVNKVVPKEELQKrspnrgknftpdgQKKLYVGNLPFEAEYDEIKAHFEQYGEVRDLYIpLRDD---QSRGFCFITMD-DEASDEAMSQLNG 211
                  4556667888888888888852246677777666433346677733599*********99999*********999999999888887664442222222222222247*************************9999878996...67******987.58889******96 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 9.3e-08
    TIGR01659 188 gesikdtnlyvtnlprtitddqldtifgkygsivqknilrdkltgkprgvafvrfnkreeaqeaisalnnv 258
                  g + k+  lyv nl+   t++ l  +f  +g++ +  +  d  t +prg  f+ +++  + + ais l+ +
  MMETSP1061-20121228|42531_1 235 GARPKQFKLYVGNLSFYTTQETLTGVFEEFGEVFDCYLPTDPNTDQPRGFGFITMDQA-DGEVAISELDGL 304
                  55567889*********************************************99875.567788888765 PP

>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   2.8e-06    0.0016     141     301 ..      46     221 ..      40     229 .. 0.67
   2 !   10.0   0.0   9.7e-05     0.057      60     128 ..     242     309 ..     226     316 .. 0.81

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 2.8e-06
    TIGR01648 141 lfvGgiPktkkreeileelkkvteGvvdvivyasaa......dkkknrGfafveyeshraaamarrkllpGriklWGhviavdWaePevevded........vmakvkilyvrnlmletteeiieksfsefkpGave......rvkkirdyafvhfedredavkamdelnGkeleGseiev 301
                  ++vG +P   ++ee+ + ++     v++v +  +++       k + +Gf+fv+  s      a   l    + + G+ + v+   P++e  +         +    k lyv nl  e+  + i+  f+++  G v       r  + r + f+ ++  e++ +am +lnG ++ G ++ v
  MMETSP1061-20121228|42531_1  46 VYVGNLPFFTTQEEVSDLFTDNGISVINVSMPMEPDridsetGKPRSKGFCFVDVASFDMIKTAIDALN--AMDMNGRDLIVNKVVPKEELQKRspnrgknfTPDGQKKLYVGNLPFEAEYDEIKAHFEQY--GEVRdlyiplRDDQSRGFCFITMD-DEASDEAMSQLNGADFMGRPLVV 221
                  689999999999999999999888999998866554332211577889999999888766666666553..355566666666666666655431111111134456889999999999999999999999..887622222244455556777654.47788999999999999988755 PP

  == domain 2    score: 10.0 bits;  conditional E-value: 9.7e-05
    TIGR01648  60 evfvGkiPrdlyedelvPlfekvGkiyelrlmmd.ldGknrGyafvtfcnkeeakeavkelnnyeirpGr 128
                   ++vG +     ++ l  +fe+ G++++  l  d    + rG+ f+t  ++ + + a+ el+  e+ +Gr
  MMETSP1061-20121228|42531_1 242 KLYVGNLSFYTTQETLTGVFEEFGEVFDCYLPTDpNTDQPRGFGFITM-DQADGEVAISELDGLEL-DGR 309
                  67889998888899999*****************666789******97.56788999999999887.455 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.37u 0.16s 00:00:00.53 Elapsed: 00:00:00.31
# Mc/sec: 1434.85
//
Query:       MMETSP1061-20121228|42535_1  [L=269]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (269 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1690.72
//
Query:       MMETSP1061-20121228|42537_1  [L=295]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-44  149.5   0.0    1.9e-43  146.7   0.0    2.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    8.7e-38  128.2   0.0    4.2e-37  125.9   0.0    2.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    1.1e-35  121.1   0.0    1.6e-34  117.3   0.0    2.7  1  TIGR02415 23BDH: acetoin reductases
      3e-32  109.7   0.1    5.5e-31  105.6   0.0    2.7  2  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    3.9e-30  102.8   0.7      2e-29  100.6   0.5    1.9  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
      4e-29   99.3   0.2    6.4e-29   98.6   0.1    1.2  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    1.5e-25   87.9   1.5      5e-25   86.2   1.0    1.9  1  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
    6.5e-25   85.9   0.1    1.4e-24   84.8   0.1    1.5  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    7.1e-23   79.0   0.2    2.5e-22   77.3   0.1    1.8  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    1.4e-20   71.5   1.4    1.4e-19   68.2   1.0    2.0  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
    4.1e-17   60.0   0.0    5.6e-17   59.5   0.0    1.1  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00018   18.8   0.0      0.012   12.9   0.0    2.1  2  TIGR01500 sepiapter_red: sepiapterin reductase
    0.00033   17.6   0.0       0.14    9.0   0.0    2.1  2  TIGR04180 EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
     0.0015   16.0   0.0      0.067   10.5   0.0    2.3  2  TIGR01289 LPOR: light-dependent protochlorophyllide reductase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.7   0.0   6.6e-46   1.9e-43       1     238 [.      24     290 ..      24     291 .. 0.85

  Alignments for each domain:
  == domain 1    score: 146.7 bits;  conditional E-value: 6.6e-46
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekae...elaeelkeagvkaaavkldvsdeeevkelveeveeelg.eidilvnnAGit...........rDklllrmke.edwdevikvnLkgvfnvtkavlkkmikk..............rsGriinissvvgllGnagqanYaasKaGligltkslakElasrnitvnavaPGfietdmteklsekvkkkileqipl.krlgkpeevaaavafLasdeasyitGqvlkvdGGl 238
                  al+tGas g+G+a+a+++ +ega+v++++  +++ ++   el  e +e+ ++aa v +dv++ ++v+++++++e+ +g ++d +vn AGi+            D    r+++ e +++v+ vn++g+fnv++ ++++m+ +               +G i+n +s++++ G++gqa Y+asK+ ++g+t  la++la ++i+vn++aPG+ +t++ e l+ kv++++ +++p   rlg+p+e aa+v+ + +     i+G+v+++dGGl
  MMETSP1061-20121228|42537_1  24 ALITGASSGLGRATAERFVREGARVILCDLPSSNGLAvqaELCCESREEETRAAFVPTDVTRPDQVEAALDAAEKVFGgTVDTVVNCAGIAlarktissrsgDDPQSWRVHDlESFERVLGVNVSGTFNVIRLAVERMVASgastsastpdeggtERGVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLAPHGIRVNTIAPGLFRTPLLEGLPPKVQQELGASVPFpSRLGDPDEYAALVQSIVE--NPMINGEVIRIDGGL 290
                  79**************************9988776541114445667788999**********************99759**********6333223333223566677766478***********************86322222222332322679**************************************************************************967*************9987..789***********8 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.0   1.4e-39   4.2e-37       1     242 []      22     292 ..      22     292 .. 0.82

  Alignments for each domain:
  == domain 1    score: 125.9 bits;  conditional E-value: 1.4e-39
    TIGR01829   1 rvalvtGglgGiGtaickrlakdGykvvanvap..n.eerakewlqekevegfdvavvkadvssfeeakaavakveael.GpvdvlvnnaGit..rdavfkk..........mtkeqWeevidtnlnsvfnvtrpviegmlergf..............GriinissvnGlkGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyiatemvkavredvlkkivaqiPv.krlgkpeeiaaavaflaseeagyvtGatlsvnGGlym 242
                  r+al+tG++ G+G+a ++r++++G +v+    p  n  + ++e+  e++ e++  a+v +dv+  ++ +aa++  e+   G+vd +vn+aGi+  r ++  +           + e++e v+ +n+++ fnv r  +e m+  g               G i+n +s+    Gq+Gqa ysa+k  ++G+t  la++ a +g+ vn+iaPG   t++ + ++ +v +++ a++P   rlg p+e aa+v+ ++      + G+ + ++GGl m
  MMETSP1061-20121228|42537_1  22 RIALITGASSGLGRATAERFVREGARVILCDLPssNgLAVQAELCCESREEETRAAFVPTDVTRPDQVEAALDAAEKVFgGTVDTVVNCAGIAlaRKTISSRsgddpqswrvHDLESFERVLGVNVSGTFNVIRLAVERMVASGAstsastpdeggterGVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLAPHGIRVNTIAPGLFRTPLLEGLPPKVQQELGASVPFpSRLGDPDEYAALVQSIVE--NPMINGEVIRIDGGLRM 292
                  8**************************9887773321244566667777788999******************999876369*********95446655444111111111145567789**************999999865422222233333333388*************************************************************************857*************9985..568***********976 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.0   5.3e-37   1.6e-34       1     252 [.      22     291 ..      22     293 .. 0.77

  Alignments for each domain:
  == domain 1    score: 117.3 bits;  conditional E-value: 5.3e-37
    TIGR02415   1 kvalvtGaaqGiGkaiaerLakdGfavavadlneetaketakel....kekgtkavavkldvsdkseveeaveqaveklG.eldvlvnnaGvalvtpileite............eeleklynvnvkgvlfGiqaaaekfkklk.............hkGkiinaasiagvegspelsaysstkfavrgltqtaakeLakkgitvnayaPGivktemreeideklaelagkeigekleefsseiklGresePedvaelvsflasedsdyitGqsilvdGGlv 252
                  ++al+tGa+ G+G+a aer++++G  v+++dl+  +  +++ el    +e++t+a +v +dv+  ++ve+a++ a + +G ++d +vn aG+al    +++ +            e++e++  vnv g++  i+ a+e++   +             ++G i+n asia+  g+  ++ays++k a+ g+t   a++La++gi vn+ aPG+ +t++ e +  k+ ++ g ++              r   P++ a+lv  +       i G +i +dGGl+
  MMETSP1061-20121228|42537_1  22 RIALITGASSGLGRATAERFVREGARVILCDLPSSNGLAVQAELccesREEETRAAFVPTDVTRPDQVEAALDAAEKVFGgTVDTVVNCAGIALARKTISSRSgddpqswrvhdlESFERVLGVNVSGTFNVIRLAVERMVASGastsastpdeggtERGVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLAPHGIRVNTIAPGLFRTPLLEGLPPKVQQELGASVP----------FPSRLGDPDEYAALVQSIVE--NPMINGEVIRIDGGLR 291
                  69*******************************76666666555333368899**************************7369*********98765443321111222222223889***************9998887543211111222222225799*********************************************************9998887765544332..........23356677777777776654..3567777777777775 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.0   1.9e-33   5.5e-31       2     190 ..      22     241 ..      21     254 .. 0.81
   2 ?   -2.7   0.0       2.1     6e+02     239     252 ..     277     290 ..     260     292 .. 0.74

  Alignments for each domain:
  == domain 1    score: 105.6 bits;  conditional E-value: 1.9e-33
    TIGR01963   2 kvalvtGaasGiglaiakelaaaGakvvvndle....eeaaeaaakeleeaggevlalkadvtkeeeiadlieavaaefg.sldiLvnnAGiqhvap.iee...........fptekfekiiavnltsafhtiraalpimkkqg..............wGriiniasvhglvasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyvrtpLvek 190
                  ++al+tGa+sG+g+a a++++++Ga+v++ dl      + ++++  e +e+ ++++ +++dvt+ ++++  ++a+++ fg ++d +vn AGi   ++ i +           ++ e+fe+++ vn++++f +ir a+  m ++g              +G+i+n as+ ++ +   ++aY a+K ++vG+t  lA + A +gi++n+i+Pg  rtpL e 
  MMETSP1061-20121228|42537_1  22 RIALITGASSGLGRATAERFVREGARVILCDLPssngLAVQAELCCESREEETRAAFVPTDVTRPDQVEAALDAAEKVFGgTVDTVVNCAGIALARKtISSrsgddpqswrvHDLESFERVLGVNVSGTFNVIRLAVERMVASGastsastpdeggteRGVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLAPHGIRVNTIAPGLFRTPLLEG 241
                  789*****************************86322233333444556778899999*********************7258*********9876524322222244444467899***********************76432222222222233389*********************************************************985 PP

  == domain 2    score: -2.7 bits;  conditional E-value: 2.1
    TIGR01963 239 aqitGqalsldgGw 252
                    i+G+ + +dgG 
  MMETSP1061-20121228|42537_1 277 PMINGEVIRIDGGL 290
                  46999999999995 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.5   6.7e-32     2e-29       3     250 .]      21     292 ..      19     292 .. 0.81

  Alignments for each domain:
  == domain 1    score: 100.6 bits;  conditional E-value: 6.7e-32
    TIGR03206   3 dkvaivtgggggiggaicrrfaeegakvavldlnaeaaekvaaai....rekggkaeavavditdrasvdaavaaaeealg.pvdvlvnnagwdvlkpflkt....ekaew........erliainltgalymhhavlkgmv............e..rkagrivniasdaarvgssgeavyaackgglvafsktlarelarhgitvnvvcpgptdtalledvkseaekpeklieaftraipl.grlgkpddlagailflasddaafitgqvlsvsggltm 250
                  +++a++tg + g+g a+  rf +ega+v + dl       v a++    re+  +a  v +d+t  + v+aa+ aae+ +g  vd +vn ag    ++ +++    ++  w        er++ +n+ g++ +    ++ mv            e   ++g ivn as aa  g  g+a y+a kg +v ++  lar+la hgi vn + pg   t+lle +      p k+++ +  ++p+  rlg+pd+ a  +      +  +i g+v+ + ggl m
  MMETSP1061-20121228|42537_1  21 SRIALITGASSGLGRATAERFVREGARVILCDLPSSNGLAVQAELccesREEETRAAFVPTDVTRPDQVEAALDAAEKVFGgTVDTVVNCAGIALARKTISSrsgdDPQSWrvhdlesfERVLGVNVSGTFNVIRLAVERMVasgastsastpdEggTERGVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLAPHGIRVNTIAPGLFRTPLLEGL------PPKVQQELGASVPFpSRLGDPDEYAALVQS--IVENPMINGEVIRIDGGLRM 292
                  6899*****************************8887766655542222888999999*******************9986379********9988877654223255555555444448*********988766666666622222222222212235789*********************************************************965......8899999******966*******9876665..557789************88 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.6   0.1   2.2e-31   6.4e-29     404     596 ..      10     231 ..       6     235 .. 0.79

  Alignments for each domain:
  == domain 1    score: 98.6 bits;  conditional E-value: 2.2e-31
    TIGR02632 404 rrmPk.ekelarrvalvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkava..lkldvtdeeavkaafaevalayGG.vdivvnnaGiavskpl.eete...leeW........dlnldilatGyflvareaarllrkqglg.............gnlvfiasknavvakknalaysaakaaeahlvrllaielaelgirvntvaP 596
                  +rmP+  ++l++r+al+tG++sG+Gr++a r+v eGa v+l dl + +  av+ael  +  +++++a  +  dvt  ++v+aa++++   +GG vd vvn aGia ++++  +++    ++W        ++ l +++ G f v r a+  + + g +             g +v +as  a   + ++ aysa+k a + +   la +la++girvnt+aP
  MMETSP1061-20121228|42537_1  10 KRMPPlTRPLSSRIALITGASSGLGRATAERFVREGARVILCDLPSSNGLAVQAELCCESREEETRAafVPTDVTRPDQVEAALDAAEKVFGGtVDTVVNCAGIALARKTiSSRSgddPQSWrvhdlesfERVLGVNVSGTFNVIRLAVERMVASGAStsastpdeggterGVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLAPHGIRVNTIAP 231
                  678763789***********************************************8776666666555999*******************9989*********9886531333322234452221111167789*********9999988876553211111122222224599999999999999**********************************9 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.2   1.0   1.7e-27     5e-25       1     205 [.      19     240 ..      19     290 .. 0.78

  Alignments for each domain:
  == domain 1    score: 86.2 bits;  conditional E-value: 1.7e-27
    TIGR03971   1 leGkvalitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefG.rldvvvanaGvl......syg......rafelse.eqWdtvldvnlkGvWktvkavvPalierk.........nG....GsiiivssvaglkalpglahyaaakhGlvgltktlanelaeygirvnsihPtsvdtamie 205
                  l  ++alitGa+ G Gra a r+ +eGa +i +dl ++        +a +++l    +  e+   +++   +dv + ++++a+++ + ++fG  +d vv+ aG++      s +      +++ +++ e ++ vl vn+ G++++++ +v  ++  +         +G    G+i+ ++s a+  +  g+a y+a+k  +vg+t  la++la++girvn+i P   +t+++e
  MMETSP1061-20121228|42537_1  19 LSSRIALITGASSGLGRATAERFVREGARVILCDLPSSN------GLAVQAELCCESR--EEE-TRAAFVPTDVTRPDQVEAALDAAEKVFGgTVDTVVNCAGIAlarktiS-SrsgddpQSWRVHDlESFERVLGVNVSGTFNVIRLAVERMVASGastsastpdEGgterGVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLAPHGIRVNTIAPGLFRTPLLE 240
                  5689******************************97655......5677888865554..333.45666789*******************6489********973333221.1112222468886548899**********************87533333333323244478******************************************************9987 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.8   0.1   4.7e-27   1.4e-24       3     244 ..      19     289 ..      18     292 .. 0.79

  Alignments for each domain:
  == domain 1    score: 84.8 bits;  conditional E-value: 4.7e-27
    TIGR01832   3 leGkvalvtGantGlGqgiavglaeaGadivgvgisels......etqekvealGrkflslkadladeeaakalvdeaveeag.kidilvnnaGiirredave.fsekd...w........ddvlnvnlkavfllsqavakkllkqG.............rkgkiiniasllsfqGGirvpsytasksavaGltkllanewakkginvnaiaPGyletnntealradekrnaaileriPa.grwGepedlagaavflassasdyvnGailavdGG 244
                  l  ++al+tGa++GlG++ a  + + Ga ++  +  + +      e   +  ++ +++  +  d++ +++++a +d a + +g  +d +vn aGi    +++   s  d   w        + vl vn+   f + + + ++++++G             ++g i+n as+ ++ G i  ++y+ask a++G+t  la ++a +gi+vn+iaPG + t   e l      ++++ + +P  +r G p++ a  a+  +      +nG ++ +dGG
  MMETSP1061-20121228|42537_1  19 LSSRIALITGASSGLGRATAERFVREGARVILCDLPSSNglavqaELCCESREEETRAAFVPTDVTRPDQVEAALDAAEKVFGgTVDTVVNCAGIALARKTISsRSGDDpqsWrvhdlesfERVLGVNVSGTFNVIRLAVERMVASGastsastpdeggtERGVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLAPHGIRVNTIAPGLFRTPLLEGLPPK--VQQELGASVPFpSRLGDPDEYA--ALVQSIVENPMINGEVIRIDGG 289
                  67899*************************98775444311000033334445566788999******************99779*********96544433312222122232222222279***********************999999999888888899******************************************************999999754..4556667777437999999764..4445555667899999999998 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   77.3   0.1   8.4e-25   2.5e-22       2     238 ..      25     290 ..      24     291 .. 0.77

  Alignments for each domain:
  == domain 1    score: 77.3 bits;  conditional E-value: 8.4e-25
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhy..rsdradae.esvaairaqggnarllkfdvadrvavrevleadiae.hgayygvvlnagia..rdaafpalseed...........wdavietnldgfynvihplvmpmira.........rkg....griitlasvsgvmgnrgqvnysaakagligatkalavelakrkitvnciapglidtemvaevekdlkeal.klvpm.krvgkaeevaalaaflmsddaayvtrqvisvnggm 238
                  l+tgas g+gra a ++  +g  + +     s+  + + e   + r + + a ++  dv+   +v ++l+a  +   g+   vv +agia  r + + + s +d           ++ v+  n+ g +nvi+  v  m+            +g    g i+  as++   g+ gq  ysa+k  ++g t  la +la   i vn iapgl  t +++  + +++++l   vp+  r+g+++e aal+  ++ +    +  +vi ++gg+
  MMETSP1061-20121228|42537_1  25 LITGASSGLGRATAERFVREGARVILCDlpSSNGLAVQaELCCESREEETRAAFVPTDVTRPDQVEAALDAAEKVfGGTVDTVVNCAGIAlaRKT-ISSRSGDDpqswrvhdlesFERVLGVNVSGTFNVIRLAVERMVASgastsastpDEGgterGVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLAPHGIRVNTIAPGLFRTPLLEGLPPKVQQELgASVPFpSRLGDPDEYAALVQSIVEN--PMINGEVIRIDGGL 290
                  89********************9976431133333333144566778889999****************9866551567889******9732333.33333322222111111116789*****************999642222222222342222679************************************************************999999945799857************998865..67999999999986 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   1.0   4.8e-22   1.4e-19       3     191 ..      19     238 ..      17     260 .. 0.78

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 4.8e-22
    TIGR03325   3 lkdevvlvtggasglgralvdrfvaegarvavldk.saagle...el..ea.ahgdkvvgvegdvrllddhkeavarcveafg.kldtlipnagiwdystalv....dipdd.rid..eafdevfeinvkgyllavkaalpalvas...............rgsviftvsnagfypngggalytaakhavvglvkelayelapy.vrvngvapgglstdl 191
                  l+ +++l+tg +sglgra  +rfv egarv + d  s++gl    el  e+ +   +   v  dv   d+ + a +   + fg  +dt+++ agi     ++     d p+  r++  e+f+ v  +nv g +  ++ a+  +vas               rg ++ t s a +  + g a y+a+k a+vg+   la +lap+ +rvn +apg + t l
  MMETSP1061-20121228|42537_1  19 LSSRIALITGASSGLGRATAERFVREGARVILCDLpSSNGLAvqaELccESrEEETRAAFVPTDVTRPDQVEAALDAAEKVFGgTVDTVVNCAGIALARKTISsrsgDDPQSwRVHdlESFERVLGVNVSGTFNVIRLAVERMVASgastsastpdeggteRGVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLAPHgIRVNTIAPGLFRTPL 238
                  67889***************************9953666664212332222134556777999**999999999999999996379*********8665554411115555446654579************9999999998887644445555555555578899999*****9****************************98*********887755 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.5   0.0   1.9e-19   5.6e-17       3     263 ..      23     291 ..      21     293 .. 0.75

  Alignments for each domain:
  == domain 1    score: 59.5 bits;  conditional E-value: 1.9e-19
    TIGR02685   3 aalvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaeln.aer..ansavvvkadlsnsasllssceeiidacfrafG.rcdvlvnnasafyptpllrgdaeeg.....aaekksle....vqvaelfGsnaiaplllikafaqrqkgtraelrssnlsivnlvdamtdqpllgfslytmakealeGltrsaalelaslqirvngvapGlsllp..dampeevkeeyrrkvplgqreasaeqiadvviflvskkakyitGtiikvdGGls 263
                  +al+tGa+  +Gr+ a+++ +eG rv+l    s++  + + ael  + r     a  v +d++     +++ e+ +da+ + fG   d +vn a        +   +++      + + +s e    v+v+  f    +a   ++ + a   + t  e  ++   ivn +   +    +g + y+ +k a++G+t   a +la+++irvn++apGl   p  + +p +v++e    vp+  r    ++ a  v  +v +    i G +i++dGGl 
  MMETSP1061-20121228|42537_1  23 IALITGASSGLGRATAERFVREGARVILCDLPSSNGLA-VQAELCcESReeETRAAFVPTDVT----RPDQVEAALDAAEKVFGgTVDTVVNCAGIALARKTISSRSGDDpqswrVHDLESFErvlgVNVSGTFNVIRLAVERMVASGASTSASTPDEGGTERGVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLAPHGIRVNTIAPGLFRTPllEGLPPKVQQELGASVPFPSRLGDPDEYAALVQSIVEN--PMINGEVIRIDGGLR 291
                  79*************************98776655433.334443133311334566677766....57899999********7368******99877777666555554333665555554421113333333333344444555555555555555556667899**99999999***************************************876633789**************************99999865..68***********96 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   4.1e-05     0.012       2      74 ..      23      93 ..      22     105 .. 0.65
   2 ?    4.0   0.0      0.02       5.9     137     194 ..     173     232 ..     133     240 .. 0.73

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 4.1e-05
    TIGR01500  2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaR.ndeaLkeskaeie..aevsalsvdlvsldleaakdvedll 74
                 ++l+tGas G+Gr+ a+++++    eg  ++L    + ++L   +ae+   +  ++ +   v+ d+    +ve  l
  MMETSP1061-20121228|42537_1 23 IALITGASSGLGRATAERFVR----EGARVILCDLpSSNGL-AVQAELCceSREEETRAAFVPTDVTRPDQVEAAL 93
                 689***************999....6666666543123333.3334433226566666666777766666666555 PP

  == domain 2    score: 4.0 bits;  conditional E-value: 0.02
    TIGR01500 137 kelqglek.tvvnlssLcaikpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapG 194
                  ++  g e+ ++vn +s++a     + a Y ask a   +   La +   + ++v   apG
  MMETSP1061-20121228|42537_1 173 PDEGGTERgVIVNTASIAAYDGQIGQAAYSASKGAIVGMTLPLARDLApHGIRVNTIAPG 232
                  55555655378*********************9775444444555555455555555555 PP

>> TIGR04180  EDH_00030: NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0026      0.77       2      75 ..      25     100 ..      24     107 .. 0.77
   2 !    9.0   0.0   0.00048      0.14      93     152 ..     142     208 ..     134     220 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0026
    TIGR04180   2 lvtGadGfiGshlvealvekGaevralvlynsfn...swGwldevekevkkeievvlGdirdaesvkkavkgvdvvf 75 
                  l+tGa   +G   +e++v++Ga+v  l+   s n       l   ++e + +   v  d+  +++v++a+  +++vf
  MMETSP1061-20121228|42537_1  25 LITGASSGLGRATAERFVREGARVI-LCDLPSSNglaVQAELCCESREEETRAAFVPTDVTRPDQVEAALDAAEKVF 100
                  9**********************96.44444444000445555555566677788999********99999999998 PP

  == domain 2    score: 9.0 bits;  conditional E-value: 0.00048
    TIGR04180  93 yvetnvkGtlnvlqaardlevekvvhtsts..evyGtaqyvPidek.....hplqaqsPysaskiga 152
                   +  nv+Gt+nv++ a +  v     ts+s  +  Gt + v ++ +         +q+ ysask + 
  MMETSP1061-20121228|42537_1 142 VLGVNVSGTFNVIRLAVERMVASGASTSAStpDEGGTERGVIVNTAsiaayDGQIGQAAYSASKGAI 208
                  5678*****************9988887652267899887766554111115567999*****9765 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0   0.00023     0.067       6      33 ..      24      50 ..      20      71 .. 0.84
   2 ?    2.9   0.0     0.048        14     149     182 ..     248     282 ..     241     289 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00023
    TIGR01289  6 viitgassglglaaakalvekgkwhvvm 33
                 ++itgassglg a+a  +v +g   v++
  MMETSP1061-20121228|42537_1 24 ALITGASSGLGRATAERFVREG-ARVIL 50
                 78*******************9.56665 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.048
    TIGR01289 149 kelagkvpikadlgdlsgleaglkaan.iamidgk 182
                  +el+  vp ++ lgd + ++a +++    +mi+g+
  MMETSP1061-20121228|42537_1 248 QELGASVPFPSRLGDPDEYAALVQSIVeNPMINGE 282
                  79*******************99987558999997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (295 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        25  (0.00609459); expected 4.1 (0.001)
Passed Fwd filter:                        14  (0.00341297); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              14  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.28
# Mc/sec: 1390.60
//
Query:       MMETSP1061-20121228|42538_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1537.67
//
Query:       MMETSP1061-20121228|42540_1  [L=870]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0066   13.8   0.0      0.019   12.3   0.0    1.7  2  TIGR00633 xth: exodeoxyribonuclease III (xth)
  ------ inclusion threshold ------
      0.032   11.7   0.0      0.057   10.8   0.0    1.3  1  TIGR00195 exoDNase_III: exodeoxyribonuclease III


Domain annotation for each model (and alignments):
>> TIGR00633  xth: exodeoxyribonuclease III (xth)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   9.3e-06     0.019      26      79 ..      98     153 ..      82     167 .. 0.81
   2 ?   -2.8   0.0      0.38   7.9e+02     142     153 ..     301     312 ..     296     314 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 9.3e-06
    TIGR00633  26 ekpDvlclQEtKvaeeqlpkelleeegYevafssakkk..gysGvallskeepesv 79 
                  ek  ++clQE+    +   +++++++gY+ +     k+  gy Gva++ k+e  +v
  MMETSP1061-20121228|42540_1  98 EKSSIICLQEVSHDWAGRFHSHFANKGYHLVTGLYGKRfnGYMGVAIAFKTEDYHV 153
                  5778*******999988899999******98765554455********99876655 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.38
    TIGR00633 142 kpvvlcGDlNva 153
                   p v+ GD+N+ 
  MMETSP1061-20121228|42540_1 301 LPCVVAGDWNIR 312
                  5899******96 PP

>> TIGR00195  exoDNase_III: exodeoxyribonuclease III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   2.8e-05     0.057      25      76 ..      98     153 ..      84     166 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 2.8e-05
    TIGR00195  25 ekpDvlclqEtkvadeqfpkelvekegYhvffsga....kgysGvailskeePlsv 76 
                  ek+ ++clqE+        +++++++gYh +         gy Gvai+ k+e  +v
  MMETSP1061-20121228|42540_1  98 EKSSIICLQEVSHDWAGRFHSHFANKGYHLVTGLYgkrfNGYMGVAIAFKTEDYHV 153
                  5678******9998877777888******97654343579********99987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.14s 00:00:00.52 Elapsed: 00:00:00.30
# Mc/sec: 3827.68
//
Query:       MMETSP1061-20121228|42536_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-32  109.4   0.1    1.3e-17   61.5   0.0    2.7  2  TIGR01733 AA-adenyl-dom: amino acid adenylation domain
    3.7e-29   99.7   1.0    8.3e-17   59.0   0.2    2.7  2  TIGR01923 menE: O-succinylbenzoate-CoA ligase
    3.7e-25   86.1   5.0    1.3e-16   57.9   0.3    2.2  2  TIGR03205 pimA: dicarboxylate--CoA ligase PimA
    5.5e-24   82.3   1.7    1.4e-19   67.8   0.1    3.2  2  TIGR03098 ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
    1.1e-18   65.1   1.0    1.9e-10   37.9   0.2    2.4  2  TIGR03208 cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
    3.9e-15   53.4   3.1    2.9e-07   27.4   0.2    2.5  2  TIGR02262 benz_CoA_lig: benzoate-CoA ligase family
      7e-15   52.4   0.1    7.9e-07   25.8   0.0    2.3  2  TIGR01734 D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
    1.6e-09   34.4   0.8    1.5e-06   24.6   0.1    2.2  2  TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
    1.1e-06   25.0   1.8    3.2e-06   23.5   0.1    2.1  2  TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase
    9.7e-06   22.3   0.8    1.7e-05   21.5   0.5    1.3  1  TIGR02372 4_coum_CoA_lig: 4-coumarate--CoA ligase
    9.9e-06   21.0   0.0    0.00084   14.6   0.0    2.7  3  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
     0.0022   14.0   0.0     0.0041   13.1   0.0    1.5  1  TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase
  ------ inclusion threshold ------
       0.01   12.3   0.1      0.022   11.2   0.0    1.5  1  TIGR02316 propion_prpE: propionate--CoA ligase


Domain annotation for each model (and alignments):
>> TIGR01733  AA-adenyl-dom: amino acid adenylation domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   4.2e-20   1.3e-17     104     230 ..     258     384 ..     117     421 .. 0.84
   2 !   45.4   0.0   3.3e-15     1e-12     235     396 ..     433     597 ..     396     609 .. 0.74

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 4.2e-20
    TIGR01733 104 aedasaeeaaeakskpddlayviyTSGStGkPKgVlvehrslvnllaslarryelseedrvlqfsslaFDlsveeiflallaGatlvvvpeeeekdeaellaallaerkvtvlsltpsllellaeea 230
                   +++++++ +  +++p+++a ++yTSGStGkPKgV+v+h+s+v+ +a+++r  +l+e+ ++l   +la+ + ++  f +l++Ga++  +++++  ++ +  a +l+  + t++ ++p ++++++++ 
  MMETSP1061-20121228|42536_1 258 VASGDTTKYPVVPPAPESAAVIMYTSGSTGKPKGVVVKHSSVVAGIAAAERSLGLNENVKYLGYLPLAHIFELMYEFCCLASGACISYADPKSLTATGAYPAGALEVFAPTHMVAVPKIWDTIKKAI 384
                  3334444445555889*************************************************************************99999988889999999999*************99887 PP

  == domain 2    score: 45.4 bits;  conditional E-value: 3.3e-15
    TIGR01733 235 kslrlvllgGealtaelverlraraeevrlinlYGpTEttvvvtveevsadeesee.e...........pvpiGrplanvrlyvldea...lrpvpvgvvGELyigGagvarGYlnrpeltaerFvedpfaksegerlYrTGDlvrlradGeleflGRaDdqvKir.GfRielgEiea 396
                   ++++++ gG  l+ ++ + +r ++ +  l+++YG TEt+   t++ev++  +  + +           +  i+    ++ +  l+ +    +  +++  GE++++G+ v +GY+ +p++t e +v+          ++ TGD++++++dG++ ++ R+ + vK++ G  + l+  e 
  MMETSP1061-20121228|42536_1 433 GNIQHAISGGGPLNGDVQTFIRVAF-GFPLVQGYGLTETCAGLTIQEVDDLRTGIAgNlvpcvevrldsTPDICD---KAGVAYLNTDrkdVDGNDIWGRGEILLRGKNVTSGYYMMPDKTDEVYVDG---------WFATGDIGQFMEDGSIRIVDRKKNLVKLKsGEYVALEKMEM 597
                  379999999*999976666666666.59*******************9998887776656666555443334443...3344444444113455578999*************************996.........5789***********************95366666666555 PP

>> TIGR01923  menE: O-succinylbenzoate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.4   0.0   4.5e-13   1.4e-10     113     189 ..     274     350 ..     169     380 .. 0.87
   2 !   59.0   0.2   2.6e-19   8.3e-17     247     371 ..     457     602 ..     425     614 .. 0.86

  Alignments for each domain:
  == domain 1    score: 38.4 bits;  conditional E-value: 4.5e-13
    TIGR01923 113 dkiatlifTSgstGkpKavvqtfrnhyasavgsaeklgftesdnWLlsLPlyHvsGlsilfrallegatlkivdkfa 189
                  ++ a++++TSgstGkpK+vv  ++  +a   +  ++lg++e+ ++L  LPl H+  l   f +l++ga +   d+++
  MMETSP1061-20121228|42536_1 274 ESAAVIMYTSGSTGKPKGVVVKHSSVVAGIAAAERSLGLNENVKYLGYLPLAHIFELMYEFCCLASGACISYADPKS 350
                  789****************************************************9999999999999998888765 PP

  == domain 2    score: 59.0 bits;  conditional E-value: 2.6e-19
    TIGR01923 247 kglpiyksyGmTEtasqvvtlevevlkaktdsvGkplasveikikvdd......................keghgeilvkganlmkgYlekgelteaveeqGwlktgDlgeldgegfllvldRrddli.ISGGENiypeeiEkvlksl 371
                   g+p+ ++yG TEt++ ++  ev+ l+  t+ +G++++ ve+++                            g geil++g+n+  gY+   + t+ v  +Gw+ tgD+g++ ++g + + dR+++l+ +  GE +  e++E v  ++
  MMETSP1061-20121228|42536_1 457 FGFPLVQGYGLTETCAGLTIQEVDDLR--TGIAGNLVPCVEVRLDSTPdicdkagvaylntdrkdvdgndIWGRGEILLRGKNVTSGYYMMPDKTDEVYVDGWFATGDIGQFMEDGSIRIVDRKKNLVkLKSGEYVALEKMEMVYGNS 602
                  489***************999998887..799************655469999**********9999988889******************9888888888**************************867899999999999886655 PP

>> TIGR03205  pimA: dicarboxylate--CoA ligase PimA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.0   0.3   1.2e-10   3.9e-08      70     274 ..     151     350 ..     130     395 .. 0.69
   2 !   57.9   0.3   4.1e-19   1.3e-16     316     519 ..     437     651 ..     426     664 .. 0.75

  Alignments for each domain:
  == domain 1    score: 30.0 bits;  conditional E-value: 1.2e-10
    TIGR03205  70 kdasvalylgntpdhpinffgalkagarvvhlspldgeralshklsdsgarllitsdlaallpmalkflekglldrlivcedeswgkvgtpk..aaipadprivtyadfvkgaakpaewpav..kaddvallqytggttglpkgamlthgnltsavsiydvwgkrsraergdvervicvlplfhiyaltvillrslkrgdlislhqrfd 274
                  k + +a++     +  i  +ga+     v+ +    g  +++  + d     ++ +  + +  + ++  +   l  +i  +d   g++ + +  ++ip+   ++t+ dfv +  + +++p v   ++  a++ yt g+tg pkg ++ h+ + + ++  +    rs   +++v + +  lpl hi+ l    + +l  g  is  +   
  MMETSP1061-20121228|42536_1 151 KPCRIAIFENTCAEWMIAALGAFSQSIGVATVYATLGIDSVAEAVVDNTISAIVCN-KTNVSYLVENAKNMPCLKTIIYTND-LVGETMDVEmpTNIPEGLTVITFDDFVASG-DTTKYPVVppAPESAAVIMYTSGSTGKPKGVVVKHSSVVAGIAAAE----RSLGLNENV-KYLGYLPLAHIFELMY-EFCCLASGACISYADPKS 350
                  66777777777778888888888888888888777777778877777765544432.2223333333334455655555554.4555544331278**************754.567888883357899*********************9998887643....233333444.678999*****99965.567899999988765544 PP

  == domain 2    score: 57.9 bits;  conditional E-value: 4.1e-19
    TIGR03205 316 tigsggaplpvevaklferkvglklksgwgmtetcspgtghplegpdkpgsiglmlpgiel......d......vvslddpkkvlppgev...gelrirgpnvtrgywnraeesaeafvgdrfltgdigyvdrdgyfflvdrkkdmi..isggfnvypqmieqaiyelpavqevivigipdqyrgeaakafvklregakpfsldelraflagklgkhelpv 519
                   + sgg pl  +v  ++    g  l  g+g+tetc+  t + ++   + g  g ++p +e+      d      v  l+  +k +   ++   ge+ +rg nvt gy+  ++++ e +v++ f tgdig + +dg + +vdrkk+++   sg +    +m e  +y      + +  gi     g+  +  v l + akp s++   a+ +g +gk e   
  MMETSP1061-20121228|42536_1 437 HAISGGGPLNGDVQTFIRVAFGFPLVQGYGLTETCAGLTIQEVD-DLRTGIAGNLVPCVEVrldstpDicdkagVAYLNTDRKDVDGNDIwgrGEILLRGKNVTSGYYMMPDKTDEVYVDGWFATGDIGQFMEDGSIRIVDRKKNLVklKSGEYVALEKM-E-MVYGNSEFVDAVAGGICCYGDGDMDR-CVALFQIAKPASMQW--AQKTGLIGKTEQEG 651
                  5679*******************************987776554.4589999******997222222122222122344444555555545559***************************************************983135555444444.4.67888888888888888766666554.578888899998874..66677777777655 PP

>> TIGR03098  ligase_PEP_1: acyl-CoA ligase (AMP-forming), exosortase A-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.8   0.1   4.4e-22   1.4e-19      48     232 ..     150     343 ..     111     392 .. 0.80
   2 !   11.7   0.1   4.3e-05     0.013     338     449 ..     507     609 ..     387     633 .. 0.72

  Alignments for each domain:
  == domain 1    score: 67.8 bits;  conditional E-value: 4.4e-22
    TIGR03098  48 krgeRvaiylekrletvlalfaaslaggvfvpinPlLkaeqvayilkDcnvkllvtskerldaledalakchdlrtlilvdepekasekka.......gaevlsweklkaleeaa..akvdvidddlaailYtsGstGrPkgvvlshrnlvaGaksvaqyLelredDrllavLPlsfDyGlnqlttaflvGatv 232
                  ++  R+ai+ +   e ++a ++a   +     +   L  + va  + D  +  +v +k+ ++ l + +++++ l+t+i +++   ++++         g++v+++++  a ++++  + v+ ++++ a i+YtsGstG+Pkgvv+ h+ +vaG  +  + L l+e+ + l  LPl+  + l     +++ Ga +
  MMETSP1061-20121228|42536_1 150 TKPCRIAIFENTCAEWMIAALGAFSQSIGVATVYATLGIDSVAEAVVDNTISAIVCNKTNVSYLVENAKNMPCLKTIIYTNDLVGETMDVEmptnipeGLTVITFDDFVASGDTTkyPVVPPAPESAAVIMYTSGSTGKPKGVVVKHSSVVAGIAAAERSLGLNENVKYLGYLPLAHIFELMYEFCCLASGACI 343
                  34459******************999999999**********************************************99886443332211235667999*******9999987678899999***************************************************9988888888888888765 PP

  == domain 2    score: 11.7 bits;  conditional E-value: 4.3e-05
    TIGR03098 338 naevlvlredGsecapee...eGelvhrGalvakGYWndpektaerfrplpkrqselkltelavfsGDlvrrDeeGflyfvgRrdemik.tsGyRvsPteveevllatglvaeavv 449
                  +a v  l+ d + ++ ++    Ge+  rG  v+ GY+  p+kt e++ +                 GD+++  e+G + +v R+ +++k  sG  v+   +e v  +++ v+ + +
  MMETSP1061-20121228|42536_1 507 KAGVAYLNTDRKDVDGNDiwgRGEILLRGKNVTSGYYMMPDKTDEVYVDGW------------FATGDIGQFMEDGSIRIVDRKKNLVKlKSGEYVALEKMEMVYGNSEFVDAV-A 609
                  3334445555555555542226*********************99986543............2479*********************95599999999998877777776544.3 PP

>> TIGR03208  cyc_hxne_CoA_lg: cyclohexanecarboxylate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.2   0.0   4.2e-09   1.3e-06     192     254 ..     271     333 ..     253     339 .. 0.93
   2 !   37.9   0.2   6.1e-13   1.9e-10     318     497 ..     441     638 ..     431     648 .. 0.76

  Alignments for each domain:
  == domain 1    score: 25.2 bits;  conditional E-value: 4.2e-09
    TIGR03208 192 lspddvtqliytsgttgepkgvmhtantllsnilayaerlelgegdvilmaspmahqtgfmyg 254
                  ++p+  + ++ytsg+tg+pkgv+    ++++ i a  + l l+e+   l+  p+ah    my 
  MMETSP1061-20121228|42536_1 271 PAPESAAVIMYTSGSTGKPKGVVVKHSSVVAGIAAAERSLGLNENVKYLGYLPLAHIFELMYE 333
                  78999******************************9999******************999996 PP

  == domain 2    score: 37.9 bits;  conditional E-value: 6.1e-13
    TIGR03208 318 agapipgalverarealgakivsawgmtengavtvtkpddaeekasvtdglplpgvevk......v........idadgaklsagev...grllvraasnfggylkrph.lnavdaegwfdtgdlafldaegyiriagrskdvi.irggenipvveieallykhpavaqva..ivaypderlgeracavvvlktgasldfa 497
                   g p+ g +    r a+g  +v  +g+te+ a  +++  d+ + +++  g  +p vev+      +        +++d + +  +++   g++l+r+    +gy   p+  + v  +gwf tgd+ +   +g iri  r+k+++ ++ ge + + ++e +  +   v  va  i +y d  + +r  a+    + as++ a
  MMETSP1061-20121228|42536_1 441 GGGPLNGDVQTFIRVAFGFPLVQGYGLTETCAGLTIQEVDDLR-TGI-AGNLVPCVEVRldstpdIcdkagvayLNTDRKDVDGNDIwgrGEILLRGKNVTSGYYMMPDkTDEVYVDGWFATGDIGQFMEDGSIRIVDRKKNLVkLKSGEYVALEKMEMVYGNSEFVDAVAggICCYGDGDM-DRCVALFQIAKPASMQWA 638
                  68899999999999***************99977776655544.444.58889999997333333322112122344556677777676689************99996267899***************************885899****999999887788888888766888988876.455666555555666555 PP

>> TIGR02262  benz_CoA_lig: benzoate-CoA ligase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.0   0.1   2.4e-09   7.5e-07      24     203 ..     109     315 ..      92     387 .. 0.75
   2 !   27.4   0.2   9.3e-10   2.9e-07     266     421 ..     421     594 ..     379     609 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.0 bits;  conditional E-value: 2.4e-09
    TIGR02262  24 fiddvsslsygeleaevrrvaaalrrlGvkree............rvllvlldtvdfpivflGairaGivpvalntlltaddyaylledsrarvvlvseellpvlkevlaklpdleklvvvgak.........p....ag..ekqlaellateseqeka.aatkaddpafwlyssGstGapkGvvhvhsnlrvtaelyarkvlglred 203
                  f  +++ l+y+++ +++ + +aal++ G  + +            r+++      ++ i+ lGa    i   ++ + l  d  a  + d    +++  +     l e + ++p l++++ + +          p    +g     + +++a++  ++ +  +  ++  a  +y+sGstG+pkGvv  hs++ +     a + lgl e+
  MMETSP1061-20121228|42536_1 109 FGPEITDLTYQQVGEKAYKFGAALAATGCVPSDpeatlekvtkpcRIAIFENTCAEWMIAALGAFSQSIGVATVYATLGIDSVAEAVVDNTISAIVCNKTNVSYLVENAKNMPCLKTIIYTNDLvgetmdvemPtnipEGltVITFDDFVASGDTTKYPvVPPAPESAAVIMYTSGSTGKPKGVVVKHSSVVAGIAA-AERSLGLNEN 315
                  5556788899999999999999998888543322222222333338899989999*************99999999999999998888888888888888888888888999999999965543222244333122222211346788999887776661567889999********************99877666.8888999886 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 9.3e-10
    TIGR02262 266 mladpelkaedekrlrlctsaGealpeevGkrwkarfGvdildGvGstellhiflsnlpddvkyGtsGkpvpGyrlrlvd.....dgg.........edvadgev...GellvsgpssaagywnnreksratfeGewtrsGdkyvrnddGsytyaGrtddllkv.sGiyvspfe 421
                  +l  ++ k+    +++ + s G +l  +v +  +  fG  +++G G te    +     dd++ G +G  vp  ++rl       d++         +dv  +++   Ge+l+ g   ++gy+  ++k+ + ++ +w  +Gd     +dGs   + r  +l+k+ sG yv+  +
  MMETSP1061-20121228|42536_1 421 VLVFKKFKKFVGGNIQHAISGGGPLNGDVQTFIRVAFGFPLVQGYGLTETCAGLTIQEVDDLRTGIAGNLVPCVEVRLDStpdicDKAgvaylntdrKDVDGNDIwgrGEILLRGKNVTSGYYMMPDKTDEVYVDGWFATGDIGQFMEDGSIRIVDRKKNLVKLkSGEYVALEK 594
                  5555566666677888999********************************9999999*******************95433122332121111111223222224449******************************************************76899997554 PP

>> TIGR01734  D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.3   0.0     7e-09   2.2e-06     144     213 ..     276     345 ..     230     354 .. 0.90
   2 !   25.8   0.0   2.5e-09   7.9e-07     343     425 ..     528     607 ..     463     639 .. 0.88

  Alignments for each domain:
  == domain 1    score: 24.3 bits;  conditional E-value: 7e-09
    TIGR01734 144 nyyiiytsGstGkPkGvqishdnLvsftnWiledfklseekqllnqapysfDLsvmdlyPsLasGGtLva 213
                  +  i+ytsGstGkPkGv ++h ++v+      +   l+e+ ++l   p +  + +m+ + +LasG  +  
  MMETSP1061-20121228|42536_1 276 AAVIMYTSGSTGKPKGVVVKHSSVVAGIAAAERSLGLNENVKYLGYLPLAHIFELMYEFCCLASGACISY 345
                  56799************************9999********************************87765 PP

  == domain 2    score: 25.8 bits;  conditional E-value: 2.5e-09
    TIGR01734 343 kGeivivGdsvskGylnnpekteeaffeaegkrayrtGDagtieddgllfyqGrlDfqikln.GyrieLedieanlkkskyike 425
                  +Gei++ G+ v+ Gy   p+kt+e++ +  g   + tGD g++ +dg +++  r    +kl+ G  + Le +e    +s+++  
  MMETSP1061-20121228|42536_1 528 RGEILLRGKNVTSGYYMMPDKTDEVYVD--G--WFATGDIGQFMEDGSIRIVDRKKNLVKLKsGEYVALEKMEMVYGNSEFVDA 607
                  7************************974..4..478*************************6588999*****99999999975 PP

>> TIGR02275  DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.0   0.0    0.0005      0.16     178     239 ..     270     331 ..     251     366 .. 0.84
   2 !   24.6   0.1   4.6e-09   1.5e-06     378     447 ..     528     597 ..     485     612 .. 0.87

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.0005
    TIGR02275 178 etkadevaffqlsGGstGtpkliPrthddyaysvrrsveiceltqqtrylcalPaahnypls 239
                  +  ++  a +  + GstG pk +   h   +  + ++     l+++ +yl  lP ah + l 
  MMETSP1061-20121228|42536_1 270 PPAPESAAVIMYTSGSTGKPKGVVVKHSSVVAGIAAAERSLGLNENVKYLGYLPLAHIFELM 331
                  55667778888999***********************999*****************99885 PP

  == domain 2    score: 24.6 bits;  conditional E-value: 4.6e-09
    TIGR02275 378 aGrlltrGPytirGyykaeehnakafdaeGfyitGdlvkltkeGyivveGrakdqin.rGGekiaaeeien 447
                   G +l rG     Gyy  ++   +++  +G++ tGd+ ++ ++G i+++ r+k+ +  + Ge +a e++e 
  MMETSP1061-20121228|42536_1 528 RGEILLRGKNVTSGYYMMPDKTDEVY-VDGWFATGDIGQFMEDGSIRIVDRKKNLVKlKSGEYVALEKMEM 597
                  6999*****************99998.58*************************997589*******9996 PP

>> TIGR02188  Ac_CoA_lig_AcsA: acetate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.5   0.1     1e-08   3.2e-06      86     262 ..     112     297 ..      89     310 .. 0.65
   2 ?    0.4   0.1       0.1        32     471     509 ..     551     587 ..     537     608 .. 0.78

  Alignments for each domain:
  == domain 1    score: 23.5 bits;  conditional E-value: 1e-08
    TIGR02188  86 dsrkltYaellrevcrlanvlkelG............vkkgdrvaiYlpmipeaviamlacaRiGavhsvvfaGfsaealaeRivdaeaklvitadeglRggkvielkkivdealekaeesvekvlvvkrtgeev.aewkegrD.vwweelvekeasaecepekldsedplfiLYtsGstGkPkGvlhttg 262
                  +   ltY+++ ++  ++ ++l ++G            v k  r+ai+     e +ia l++    +  + v+a    +++ae +vd +   +++  +++      +      +++  +++ v ++     ++ e+ +++ eg   +++++ v+++ +++ ++ +   e    i+YtsGstGkPkGv+ + +
  MMETSP1061-20121228|42536_1 112 EITDLTYQQVGEKAYKFGAALAATGcvpsdpeatlekVTKPCRIAIFENTCAEWMIAALGAFSQSIGVATVYATLGIDSVAEAVVDNTISAIVCNKTNVSYLVENAKNMPCLKTIIYTNDLVGET-----MDVEMpTNIPEGLTvITFDDFVASGDTTKYPVVPPAPESAAVIMYTSGSTGKPKGVVVKHS 297
                  56667777777777777777777762222222222223444467788888888888877776655556778999999999999999999988887766543332222222333333333334433.....33332123445654157899999999999999999********************986554 PP

  == domain 2    score: 0.4 bits;  conditional E-value: 0.1
    TIGR02188 471 etYfkklkglyftGDgarrdkdGyiwilGRvDdvinv.sG 509
                  e+Y+   +g + tGD  +  +dG i i+ R  +++++ sG
  MMETSP1061-20121228|42536_1 551 EVYV---DGWFATGDIGQFMEDGSIRIVDRKKNLVKLkSG 587
                  4554...47899******************9999987355 PP

>> TIGR02372  4_coum_CoA_lig: 4-coumarate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.5   5.5e-08   1.7e-05      95     201 ..     274     383 ..     267     418 .. 0.73

  Alignments for each domain:
  == domain 1    score: 21.5 bits;  conditional E-value: 5.5e-08
    TIGR02372  95 etarltfatsGstgtPkPvthswaaLlreaealakalgerpapvravialvPahhlyGflfs.vllPeaaGaevkelaaap.....aaallrearpgdLivatPalWeqlada 201
                  e a +++ tsGstg Pk v    + ++   +a  + lg+  +++ + ++++P  h++ +++  + l + a  +  + ++++     +a++l   +p   +va+P +W+ +  a
  MMETSP1061-20121228|42536_1 274 ESAAVIMYTSGSTGKPKGVVVKHSSVVAGIAAAERSLGL--NENVKYLGYLPLAHIFELMYEfCCLASGACISYADPKSLTatgayPAGALEVFAPTH-MVAVPKIWDTIKKA 383
                  56788999***********999999999999999****4..444579***********9996466777766665554444400011566777777776.578*****998765 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.1   0.0      0.14        45     207     291 ..      43     136 ..      25     141 .. 0.76
   2 !   14.6   0.0   2.7e-06   0.00084     413     459 ..     272     318 ..     254     327 .. 0.85
   3 ?    2.7   0.0      0.01       3.2     621     654 ..     528     561 ..     509     584 .. 0.87

  Alignments for each domain:
  == domain 1    score: -1.1 bits;  conditional E-value: 0.14
    TIGR03443 207 aigklelltesqksllPdPtkdldWsgfrGa..iqdifaenaekhPdrtcvvetksalapssktref.......tykqideasnilahyllktG 291
                   +  +++  + ++++lP+ + +l      Ga  + +if +  + + +++c+ + k +  +s+k++ef       ty+q+ e +   + +l  tG
  MMETSP1061-20121228|42536_1  43 IVRTVPVADDFSHRVLPECKGKLMTIPSNGAttLFEIFDKTLSTFGSKMCMRKRKFIGWKSKKVKEFgpeitdlTYQQVGEKAYKFGAALAATG 136
                  566788888999999999999999887777722569**************99988887666666655333333389999998888888888887 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 2.7e-06
    TIGR03443 413 GPdsnptlsftsGseGiPkGvkGrhfslayyfpWmakrfglsekdkf 459
                   P+s++ + +tsGs+G PkGv  +h s+        + +gl+e+ k+
  MMETSP1061-20121228|42536_1 272 APESAAVIMYTSGSTGKPKGVVVKHSSVVAGIAAAERSLGLNENVKY 318
                  699************************99888888888888888887 PP

  == domain 3    score: 2.7 bits;  conditional E-value: 0.01
    TIGR03443 621 vGeiyvragGlaegylglpelnaekfvknwfvek 654
                   Gei +r   ++ gy  +p+ ++e +v  wf++ 
  MMETSP1061-20121228|42536_1 528 RGEILLRGKNVTSGYYMMPDKTDEVYVDGWFATG 561
                  599****************************875 PP

>> TIGR01217  ac_ac_CoA_syn: acetoacetate-CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.3e-05    0.0041     205     286 ..     209     296 ..     108     351 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.3e-05
    TIGR01217 205 rrekvrevakelpdlravvlip.yvgdreklap..kvegal...tledllaaaqaaelvfeqlpf..dhplyilfssGttGvpkaivhsa 286
                  + + + e ak++p l+++++   +vg++  +++  +++++l   t++d++a+      ++  +p   +    i+++sG+tG pk +v   
  MMETSP1061-20121228|42536_1 209 NVSYLVENAKNMPCLKTIIYTNdLVGETMDVEMptNIPEGLtviTFDDFVAS--GDTTKYPVVPPapESAAVIMYTSGSTGKPKGVVVKH 296
                  455677789999*9999998752777766555446788875222689****9..445566666642246678************998544 PP

>> TIGR02316  propion_prpE: propionate--CoA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   7.1e-05     0.022     234     262 ..     276     304 ..     262     312 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 7.1e-05
    TIGR02316 234 psyilytsgttgkpkgvqrdvggyavala 262
                  +++i+ytsg+tgkpkgv         ++a
  MMETSP1061-20121228|42536_1 276 AAVIMYTSGSTGKPKGVVVKHSSVVAGIA 304
                  6789************9766655555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                        13  (0.00316919); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              13  [number of targets reported over threshold]
# CPU time: 0.59u 0.15s 00:00:00.74 Elapsed: 00:00:00.50
# Mc/sec: 1927.04
//
Query:       MMETSP1061-20121228|42539_1  [L=383]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0067   13.7   0.7      0.011   12.9   0.5    1.3  1  TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase


Domain annotation for each model (and alignments):
>> TIGR00466  kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.5   2.8e-06     0.011      25      97 ..     230     301 ..     220     309 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 2.8e-06
    TIGR00466  25 kGkPmivrvlekaresgaervivatddedvaqvvkkfgaevvltskdhnsGterlaevveklalkddevivnl 97 
                  +G   +v+ ++ ar +   +viva+  +d aq++  + +   + s+  +sG++   evv+ l + +d  i  +
  MMETSP1061-20121228|42539_1 230 TGEEDVVKLAKAAR-AVDLEVIVAVRSKDEAQAAIDAVGGSFMISVVGKSGADEKFEVVDGLNIAEDVTITTI 301
                  56677889888888.66669************999999999*************************9888655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (383 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.27
# Mc/sec: 1872.29
//
Query:       MMETSP1061-20121228|42541_1  [L=1333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.8e-05   19.9   0.2    0.00012   19.2   0.2    1.2  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    0.00046   17.1   0.2    0.00085   16.2   0.2    1.4  1  TIGR00893 2A0114: D-galactonate transporter
     0.0014   15.0   0.9     0.0037   13.6   0.0    1.8  2  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
  ------ inclusion threshold ------
      0.022   11.5   3.6      0.085    9.6   0.1    2.2  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
      0.068   11.1   6.2      0.014   13.3   1.0    2.2  2  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.2   0.2   1.4e-07   0.00012     230     396 ..     552     729 ..     526     741 .. 0.78

  Alignments for each domain:
  == domain 1    score: 19.2 bits;  conditional E-value: 1.4e-07
    TIGR00891 230 krsvqkrwllfvyLvvllvaanylshaiqdllPtyLkadlgl.skdtvavivvvsniGaivGglvfGtlsevlgrrkalvia.lll........gqll..ivPvfalsaekavLglglfllqllvqGvwGilPkhl.aelapadaravvaGltYqlGnLaaalasiiearlaerldeyak 396
                  +++ + +w   ++L  + v   +  ++   + P  L ++ ++ + d  + +vv+ +  ai  ++   +l  +lg r+++++  lll        g+l+  + P    +     L lg f++  l q ++   P++l a  +p++ r++ +G++ +  +L+  +a i +++l  r d+ + 
  MMETSP1061-20121228|42541_1 552 RQTFKVYWQRWIMLYYMSVLNLLSDWTCYSVAPISLLTEEAFgNIDPERLVVVFLGANAIATACE-PMLLARLGLRRTVLLGsLLLmigsivksGGLPpiMEPSLEKGHAESSLYLG-FFIVGLSQPLYQCTPALLsASWFPEEERTMATGVALNANQLGIGFAFIFGTLLVSRADDIPS 729
                  5788899*******99999988899********99999977736688899999999999988876.566677787777665413322222222233432123666666777889999.999999***********94579*********************************9997665 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.2     1e-06   0.00085      81     132 ..     660     711 ..     604     740 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 1e-06
    TIGR00893  81 alvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgai 132
                  a  sl++  +++Gl+      + ++++asWFP++er  a+++ + a++lg  
  MMETSP1061-20121228|42541_1 660 AESSLYLGFFIVGLSQPLYQCTPALLSASWFPEEERTMATGVALNANQLGIG 711
                  5568999999******99999**************************99964 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   4.6e-06    0.0037     139     227 ..     669     757 ..     656     765 .. 0.86
   2 ?   -1.1   0.3      0.14   1.1e+02     372     441 ..    1083    1154 ..    1074    1157 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 4.6e-06
    TIGR00894 139 vlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgtvvlilwlvlvyddPseHp 227
                  ++ Gl + l   +   l a W+P +ER+ ++++ l   qlG   ++  + l++      p+ f + + ++t+ +i  l+ + d P + p
  MMETSP1061-20121228|42541_1 669 FIVGLSQPLYQCTPALLSASWFPEEERTMATGVALNANQLGIGFAFIFGTLLVSRADDIPSYFGLLSQIATLCFIGTLIQFDDAPPTPP 757
                  577888888888888999***********************99887777777777799****************999998888887766 PP

  == domain 2    score: -1.1 bits;  conditional E-value: 0.14
    TIGR00894  372 nalaglvlsGvlinaldlaPryagiikgvt.tligslaglis.sllvgqllkqdsksaWkkvFllaalvavi 441 
                    ala++++sG++in+l     y + + g     +g+++g +   ++++ l+  +++++ +  + +++ ++v+
  MMETSP1061-20121228|42541_1 1083 HALAAFTVSGIVINTLSTYMDYLVRLNGAPrSYTGIVGGTFQfAIMASSLIMGKQTDKTRAYYSVTTGMLVL 1154
                   6889999*********99999999999875145677777665257788899988888888888888888776 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.3     0.013        11     337     396 ..     660     719 ..     558     721 .. 0.70
   2 ?    9.6   0.1    0.0001     0.085     258     327 ..    1087    1157 ..    1057    1187 .. 0.83

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.013
    TIGR00895 337 sptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagv 396
                    + l+l  +i+Gl     q   + l+a+ +p + R  + g+a++  +lg  ++ i +  
  MMETSP1061-20121228|42541_1 660 AESSLYLGFFIVGLSQPLYQCTPALLSASWFPEEERTMATGVALNANQLGIGFAFIFGTL 719
                  345566667788888888888889999******************999998887665544 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 0.0001
    TIGR00895  258 lyflllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavf 327 
                   +++++ +v+  l +++ +L++  ga  s   +++  ++++ +++sl++g   d+ +    +++++l+ + f
  MMETSP1061-20121228|42541_1 1087 AFTVSGIVINTLSTYMDYLVRLNGAPRSYTGIVGGTFQFAIMASSLIMGKQTDKTRAYySVTTGMLVLGAF 1157
                   5667778889999*******************************************987555555555555 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.3   1.0   1.7e-05     0.014      21     136 ..     619     747 ..     603     751 .. 0.87
   2 ?   -2.3   0.1       1.1   9.2e+02      53      78 ..    1071    1096 ..    1068    1103 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-05
    TIGR00880  21 ltdrvGrkpvllvglfifvlsqllfals............snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla.qalgwralflilallallafilllf 136
                  l +r+G +  +l+g ++ ++++++   +            +  ++l++ ++++G++      + a l a+ ++eeer+ a g+++ +  lg+ ++ ++G++l+  a      f +l+ +a+l+fi +l+
  MMETSP1061-20121228|42541_1 619 LLARLGLRRTVLLGSLLLMIGSIVKSGGlppimepslekgHAESSLYLGFFIVGLSQPLYQCTPALLSASWFPEEERTMATGVALNANQLGIGFAFIFGTLLVsRADDIPSYFGLLSQIATLCFIGTLI 747
                  457899888888888888888888777778888999999888899************99999999999**********************************988888899999999999999997765 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 1.1
    TIGR00880   53 vliiarilqGfgaaaalvagaaliad 78  
                   +l  + i qGf++a a  ++ ++++ 
  MMETSP1061-20121228|42541_1 1071 SLHACMIRQGFSHALAAFTVSGIVIN 1096
                   57778888999999999888888775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.63u 0.15s 00:00:00.78 Elapsed: 00:00:00.44
# Mc/sec: 3998.67
//
Query:       MMETSP1061-20121228|42542_1  [L=557]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0077   14.3   0.0       0.08   11.1   0.0    2.4  2  TIGR02620 cas_VVA1548: putative CRISPR-associated protein, VVA1548 family


Domain annotation for each model (and alignments):
>> TIGR02620  cas_VVA1548: putative CRISPR-associated protein, VVA1548 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.1   0.0   1.9e-05      0.08      19      57 ..     122     160 ..     109     174 .. 0.89
   2 ?    0.3   0.0     0.045   1.8e+02      39      69 ..     183     211 ..     165     235 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.9e-05
    TIGR02620  19 qiDkfvdhldlieiseGDkviGtlPvslaadickkgary 57 
                   +D+f +  dl+    GD v+ ++ +s+ + ic k+++y
  MMETSP1061-20121228|42542_1 122 LLDEFLEGEDLSMTDTGDAVVADVLLSIFRVICCKQVHY 160
                  579999999999*************************99 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.045
    TIGR02620  39 iGtlPvslaadickkgaryfelslnvraelr 69 
                  +G+  + +++d++++  ry +l  +v+++ +
  MMETSP1061-20121228|42542_1 183 MGEKTITMMRDVSER--RYSHLIWDVEESED 211
                  6888999******98..67788888877654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (557 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.15s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 2535.10
//
Query:       MMETSP1061-20121228|42543_1  [L=839]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       244  (0.0594832); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.38u 0.13s 00:00:00.51 Elapsed: 00:00:00.43
# Mc/sec: 2575.32
//
Query:       MMETSP1061-20121228|42544_1  [L=870]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (870 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 3479.71
//
Query:       MMETSP1061-20121228|42546_1  [L=218]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (218 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1251.03
//
Query:       MMETSP1061-20121228|42545_1  [L=736]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-17   61.0   0.2    1.3e-08   30.9   0.0    2.2  2  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    9.9e-11   38.4   0.3    7.2e-07   25.6   0.0    2.1  2  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
    4.4e-07   26.9   0.0     0.0029   14.3   0.0    2.7  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
    4.8e-07   26.7   0.0    7.2e-06   22.8   0.0    2.2  2  TIGR00643 recG: ATP-dependent DNA helicase RecG
    3.6e-06   23.5   5.0    5.3e-06   23.0   0.0    3.1  4  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
     0.0012   14.9   0.0     0.0026   13.9   0.0    1.5  1  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.9   0.0   1.9e-11   1.3e-08       5     211 ..      68     287 ..      64     307 .. 0.73
   2 !   27.9   0.1   1.5e-10   1.1e-07     276     356 ..     399     480 ..     390     494 .. 0.88

  Alignments for each domain:
  == domain 1    score: 30.9 bits;  conditional E-value: 1.9e-11
    TIGR04121   5 awfaargw.eprafQkevleaaeegesglliapTGaGKTlavflpslielaakekpk..kglkvlyitPLkaLakdieraleapieelgl..eirv..elrtGDtssser.......arqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRGdlleLaLarLrrlapelrvvgl.sATvg.nleeaaevllgeekeekaklvkakek 211
                  ++++++++ ++++ Q +++  + ++++  ++a TG+GKTla  lp++ ++ +++ p   + + +l ++P + La +++    + ++ l++  ++r   +  +G +s  ++       ++ +++  di++ Tp  ++ +l++ +  + +++l+++++DE   Ll  k  + ++ ++a + +  p++r++g+ sAT     ++  + ll+++  ++ +l++++ +
  MMETSP1061-20121228|42545_1  68 DFLDSKNFhTMTPVQAATIPLFLQNKDVAVQAVTGSGKTLAFLLPTVERIRKRAIPLskHQIGALILSPTRELALQTSTVCAELCKFLDMtpPLRLvgGGNAGKSSGVNHrpvtedlKNFHREGNDIIIGTPGRMEDVLTRYNVLD-VSELDILILDEADVLLFGK--TVMDPTIATILNRLPKMRRTGIfSATTTfTSNKSIKPLLQRAGMRNPVLINVQVA 287
                  67888887246789************************************9544433338999**************9999998886555115553222334444332221111111344567789**********9999988877.589**************99..689999***************8788765133344455555555577777766544 PP

  == domain 2    score: 27.9 bits;  conditional E-value: 1.5e-10
    TIGR04121 276 aleialhHgsldkeqRekveaalkagkl.ravvcTssLdLGvDfgdvdlviqvGspkgvaRllQRiGRsnHrldepskillv 356
                   l+i l Hg l ++ Rek  + +++ k   a+ +T     G+D +d+d v+qv +p+  + ++ R+GRs+ +  + s +ll+
  MMETSP1061-20121228|42545_1 399 GLTIELLHGKLVQKRREKAMERFRESKTgGALFATDVAARGLDVSDIDWVVQVDAPQDPSQFVHRVGRSARAGRQGSSLLLL 480
                  57899*************99999988763699*************************************9888888877765 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.6   0.0   1.1e-09   7.2e-07      40     285 ..      81     355 ..      50     373 .. 0.70
   2 !   10.8   0.1   3.3e-05     0.022     312     385 ..     407     482 ..     399     491 .. 0.80

  Alignments for each domain:
  == domain 1    score: 25.6 bits;  conditional E-value: 1.1e-09
    TIGR03817  40 hqaraaelahaGehvvvatgtasGkslayllPvlsalaed......pratalylaPtkalaadqlravkelee...............rdvraatydGdtpaeerewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsy...rGvfGshvalvlrrlrrlcaryGaePvfllasatsadpaaaasrl...iGleveavtedgsPrgartvvlwePalle.....legengapvrrsasaeaadlladlvaegvrtltfvrsrrgae 285
                   qa++  l  + ++v+v + t sGk+la+llP ++++++        +  al l+Pt+ la     ++ el +                +  + +      ++ +++ re  ++++  P  +    l  ++     + +l  +++de+      + v+   +a++l rl ++ ++   + +  ++s  s +p  + + +   + ++v++ +  ++P+ +  v   +   ++      + e ++      +     l+++l ++  r ++f++s r+  
  MMETSP1061-20121228|42545_1  81 VQAATIPLFLQNKDVAVQAVTGSGKTLAFLLPTVERIRKRaiplskHQIGALILSPTRELALQTSTVCAELCKfldmtpplrlvgggnAGKSSGVNHRPVTEDLKNFHREGNDIIIGTPGRMEDV-LTRYNVL--DVSELDILILDEADVLlfgKTVMDPTIATILNRLPKMRRTGIFSATTTFTSNKSIKPLLQRAGMrnpVLINVQVAAAPATPKDDSLVSASDSKNTTakkksKQSESSSSTYTPTTLTNYYLVTKLEEKISRLVAFLQSHRHEK 355
                  5677777788899*************************996765555999*********************999999999988877754445555555667788899999999999999988654.4444332..36789999999998643336788888999999998876665556666667777777765544440013334444444455555544444444433344444444444444455555555667777777777777888777655 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 3.3e-05
    TIGR03817 312 Gylaedrre..leralkdGellgvaatnalelGvdisGldavviaGfPGtvaslwqqaGraGrrgqdalvvlvard 385
                  G l ++rre  +er  ++ +  ++ at+    G+d+s +d vv    P   + +  ++Gr+ r+g++   +l+ +d
  MMETSP1061-20121228|42545_1 407 GKLVQKRREkaMERFRESKTGGALFATDVAARGLDVSDIDWVVQVDAPQDPSQFVHRVGRSARAGRQGSSLLLLTD 482
                  556666764336666666666678899999**********************************998666655544 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0   0.00011     0.075       9      48 ..      75     114 ..      69     122 .. 0.91
   2 !   14.3   0.0   4.2e-06    0.0029     236     332 ..     383     482 ..     326     496 .. 0.87

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.00011
    TIGR00614   9 lesfrpvqlevinavlegrdalvvmatGgGksLCyqlpav 48 
                  ++   pvq  +i   l+++d+ v   tG Gk L + lp+v
  MMETSP1061-20121228|42545_1  75 FHTMTPVQAATIPLFLQNKDVAVQAVTGSGKTLAFLLPTV 114
                  677889*******************************987 PP

  == domain 2    score: 14.3 bits;  conditional E-value: 4.2e-06
    TIGR00614 236 rkkveqvaaeL..qkkglaaaaYhagleesarkevqkkflrdei.qvvvatvafGmGinkpdvRfvihyslpksiesYYqesGRaGRDglksecvlfyap 332
                  +k+++++ ++    k+gl+    h  l +++r++  ++f + +    + at     G++ +d+  v+  ++p++  ++   +GR+ R g + +++l+ + 
  MMETSP1061-20121228|42545_1 383 KKQSKKTGNDAddAKDGLTIELLHGKLVQKRREKAMERFRESKTgGALFATDVAARGLDVSDIDWVVQVDAPQDPSQFVHRVGRSARAGRQGSSLLLLTD 482
                  55555554433116899**********************9655526899998899***********************************9999998765 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.037        25     263     349 ..      99     202 ..      95     227 .. 0.58
   2 !   22.8   0.0     1e-08   7.2e-06     473     568 ..     390     485 ..     375     494 .. 0.80

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.037
    TIGR00643 263 GdVGsGKTvVavlallavies......Gyq..valmaPTeiLAeQhyeklrelleplgie..valLtg....slkkkkkkelleeias...GeielvvGThall 349
                     GsGKT+  +l +++ i++        q  ++++ PT  LA Q    ++el + l+++  + l+ g    ++ + +++ ++e++++      ++++GT   +
  MMETSP1061-20121228|42545_1  99 AVTGSGKTLAFLLPTVERIRKraiplsKHQigALILSPTRELALQTSTVCAELCKFLDMTppLRLVGGgnagKSSGVNHRPVTEDLKNfhrEGNDIIIGTPGRM 202
                  5569****99999999877641111112233267899********99999998776655322555544100033444455666666541112246777776555 PP

  == domain 2    score: 22.8 bits;  conditional E-value: 1e-08
    TIGR00643 473 leelkkafpklnvallhgrlksdekeevleeFrekev.diLvaTtviEvGvdvPnatvmviedaeRfGlsqLHQLRGRvgRgekksyclLvaepkse 568
                   ++  +a   l+++llhg+l ++ +e+++e+Fre ++   L aT v   G+dv +   +v  da        H + GR +R  +++  lL+ ++k+e
  MMETSP1061-20121228|42545_1 390 GNDADDAKDGLTIELLHGKLVQKRREKAMERFRESKTgGALFATDVAARGLDVSDIDWVVQVDAPQDPSQFVHRV-GRSARAGRQGSSLLLLTDKEE 485
                  455556667789*********************8765279********************999998665555655.999998899888887755554 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0      0.04        28      12      50 ..      76     114 ..      70     120 .. 0.90
   2 ?   -1.9   0.0      0.26   1.8e+02     202     238 ..     331     367 ..     308     378 .. 0.82
   3 !   23.0   0.0   7.7e-09   5.3e-06     247     331 ..     398     483 ..     379     495 .. 0.88
   4 ?   -3.9   1.6       1.1   7.2e+02     502     536 ..     670     702 ..     636     709 .. 0.57

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.04
    TIGR01389  12 eeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaL 50 
                  ++  + q++ i   l+++dv +   tG Gk l + +P++
  MMETSP1061-20121228|42545_1  76 HTMTPVQAATIPLFLQNKDVAVQAVTGSGKTLAFLLPTV 114
                  6677899***************************99975 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.26
    TIGR01389 202 afsvvkkenkkkqlleylkkereksGiiYassRkkve 238
                  ++ v+k e+k + l+ +l+++r++  i++  + + v+
  MMETSP1061-20121228|42545_1 331 YYLVTKLEEKISRLVAFLQSHRHEKTIVFFLTCACVD 367
                  5778888999999**********99999988877666 PP

  == domain 3    score: 23.0 bits;  conditional E-value: 7.7e-09
    TIGR01389 247 kgiealaYhaGlskkvRaeaqekFleddv.kvvvatvaFGmGidksdvRfvihldlPknlesyyqeaGRaGRDGlkaeaillysea 331
                  +g++    h+ l +k R++a e+F e ++   + at     G+d sd+ +v+ +d P++  ++   +GR+ R G++  ++ll + +
  MMETSP1061-20121228|42545_1 398 DGLTIELLHGKLVQKRREKAMERFRESKTgGALFATDVAARGLDVSDIDWVVQVDAPQDPSQFVHRVGRSARAGRQGSSLLLLTDK 483
                  57777788****************9987626899*****************************************99999987655 PP

  == domain 4    score: -3.9 bits;  conditional E-value: 1.1
    TIGR01389 502 kkvvkkek....kakkkalsvevdeaLfeaLrelRkela 536
                  +k+    +    + ++++  ++++e+L+++Lr+  k+++
  MMETSP1061-20121228|42545_1 670 DKK----RgrnaQIVDEWEDLAKEERLYKKLRR--KKIT 702
                  222....13334677888999999999999985..4444 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.8e-06    0.0026     260     289 ..      88     117 ..      11     129 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.8e-06
    TIGR01407 260 elteeekslIeAatGtGKtlgYLLpalyla 289
                   + +++++ ++A tG+GKtl++LLp +   
  MMETSP1061-20121228|42545_1  88 LFLQNKDVAVQAVTGSGKTLAFLLPTVERI 117
                  4778999******************87654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (736 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       233  (0.0568016); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.43u 0.14s 00:00:00.57 Elapsed: 00:00:00.43
# Mc/sec: 2259.16
//
Query:       MMETSP1061-20121228|42549_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       199  (0.0485129); expected 82.0 (0.02)
Passed bias filter:                      140  (0.0341297); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.16s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1230.14
//
Query:       MMETSP1061-20121228|42547_1  [L=497]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (497 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 1987.84
//
Query:       MMETSP1061-20121228|42548_1  [L=552]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (552 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.23
# Mc/sec: 3167.74
//
Query:       MMETSP1061-20121228|42551_1  [L=413]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (413 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 2096.60
//
Query:       MMETSP1061-20121228|42550_1  [L=636]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0035   14.6   0.2     0.0071   13.6   0.2    1.5  1  TIGR03875 RNA_lig_partner: RNA ligase partner, MJ_0950 family


Domain annotation for each model (and alignments):
>> TIGR03875  RNA_lig_partner: RNA ligase partner, MJ_0950 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.2   1.7e-06    0.0071     113     179 ..     240     306 ..     208     321 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.7e-06
    TIGR03875 113 eavreaaeeeaelekeeekkeevgeiikklRekYRealRkGilDsaeDldvllLAkeldaavvsaDe 179
                  +a  +a+e   e +++ e   e +++++kl ++YR alR+G++ s   l + +   e +aa ++aD+
  MMETSP1061-20121228|42550_1 240 NACCQAVEFVFEKDTQGEVAMEAARLVAKLVKEYRGALRTGVVRSFVKLPLRVHVDEAQAAKLAADA 306
                  445556666666556666667799*********************9999888888888888888875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (636 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       190  (0.0463189); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 2798.17
//
Query:       MMETSP1061-20121228|42554_1  [L=366]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (366 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       404  (0.0984885); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1932.32
//
Query:       MMETSP1061-20121228|42552_1  [L=337]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-17   61.0   0.0    1.4e-17   60.7   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    1.8e-09   35.2   0.0      3e-09   34.5   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   6.6e-21   1.4e-17       5     185 ..      49     219 ..      45     235 .. 0.87

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 6.6e-21
    TIGR03903   5 kvaikllRedaaeeerlvaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtG 185
                    aik +  ++ +ee   a    e+++ ++++h +i++L D  +      + v e ++G  l +++ a+     +e        ++a+   hd+ v hRDLkP+n+++  ++++s+ k+ DFG +  + +     e+ lt +    G+P Y aPe L g     ++D+++ G+i+   L G
  MMETSP1061-20121228|42552_1  49 TFAIKCVNRKKLTEEDEAA-LLDEVSILKEMKHLHIIRLYDFFKEAT-TYYLVMEEMDGGELFDRIVAKAYYNEKEARDTCKILIEAVGYMHDNNVAHRDLKPENLLLVSKNDDSQVKIADFGFAKKVYD-----ENSLTTQ---CGTPGYVAPEILEGRKYDQRADMWSVGVILYILLGG 219
                  5789999888777776655.668******************988766.8999******************999999888888899**************************************9865444.....4556654...7***************************98766666 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.5   0.0   1.4e-12     3e-09      47     168 ..      71     207 ..      64     234 .. 0.77

  Alignments for each domain:
  == domain 1    score: 34.5 bits;  conditional E-value: 1.4e-12
    TIGR03724  47 EarllseakkagvntPvvydvdpeekkivmeyiegkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiiv..k..ddklyliDfGLgkk....skevedkavDlhvlkrslestheelaeeli 168
                  E+ +l+e+k+  +   + ++ +  ++ +vme+++g +l d + +k +       +++k + e+vg +H+++++h Dl ++N+++  k  d+++ + DfG +kk    ++   + ++  +v  ++le+ ++++  +++
  MMETSP1061-20121228|42552_1  71 EVSILKEMKHLHIIRLYDFFKEATTYYLVMEEMDGGELFDRIVAKAYynekearDTCKILIEAVGYMHDNNVAHRDLKPENLLLvsKndDSQVKIADFGFAKKvydeNSLTTQCGTPGYVAPEILEGRKYDQRADMW 207
                  666666666666655555555667789********999887776665678888999**************************995515578999*******995554444455566666777777777666666665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (337 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1779.21
//
Query:       MMETSP1061-20121228|42555_1  [L=341]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (341 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 2045.83
//
Query:       MMETSP1061-20121228|42557_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.19   10.1   3.3       0.48    8.8   0.1    2.8  3  TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV


Domain annotation for each model (and alignments):
>> TIGR02847  CyoD: cytochrome o ubiquinol oxidase subunit IV
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   0.0     0.076   3.1e+02      10      26 ..      34      50 ..      29      73 .. 0.59
   2 ?    8.8   0.1   0.00012      0.48       5      83 ..      86     164 ..      83     167 .. 0.78
   3 ?   -0.7   0.1      0.11   4.5e+02      44      68 ..     199     221 ..     192     239 .. 0.55

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.076
    TIGR02847 10 GfvlsvllTvisFllvm 26
                 G+ +s++l +i  +l +
  MMETSP1061-20121228|42557_1 34 GWAISFVLSIIYLFLFI 50
                 45555555554433333 PP

  == domain 2    score: 8.8 bits;  conditional E-value: 0.00012
    TIGR02847   5 ksYliGfvlsvllTvisFllvmskllskeltlvllivlavvQilvhlvfFLhlntsseqrwnllallftili.vaivvvg 83 
                  +s    fv  v++T++ F+l  ++ + k+l l+ +++ +   +  +l f L   +s  ++++l+  +f ++i +ai+ +g
  MMETSP1061-20121228|42557_1  86 NSHTWSFVEDVIFTALCFVLPSKQGFAKRLSLASVVL-SHGILHANLGFGLACASSGPEKAELIFGIFGAFIsLAILNMG 164
                  5677789*******************99998887765.444577889999999999999999999999876624555555 PP

  == domain 3    score: -0.7 bits;  conditional E-value: 0.11
    TIGR02847  44 vvQilvhlvfFLhlntsseqrwnll 68 
                  + Q++v +  FL+ n+  +  + l+
  MMETSP1061-20121228|42557_1 199 ITQLWVTVSGFLKPNK--DFVNPLM 221
                  6777777777776443..3333344 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.16s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1619.87
//
Query:       MMETSP1061-20121228|42556_1  [L=717]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (717 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.35
# Mc/sec: 2703.89
//
Query:       MMETSP1061-20121228|42558_1  [L=637]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0078   13.9   0.0      0.025   12.3   0.0    1.8  1  TIGR00249 sixA: phosphohistidine phosphatase SixA


Domain annotation for each model (and alignments):
>> TIGR00249  sixA: phosphohistidine phosphatase SixA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.3   0.0   6.1e-06     0.025      42      98 ..      77     135 ..      71     148 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 6.1e-06
    TIGR00249  42 gveldrilvSplvRAeqtaeivadaldesklevlegl..tPlgdiglvadyleelkeeg 98 
                  g ++ ++l Sp +   +t++ +a    ++  e+++++  tP + + +++d+le+++ + 
  MMETSP1061-20121228|42558_1  77 GTSMGLVLLSPSRTITETLNALASSTAQQLEEIWDEVgyTPQERASQLSDLLEKFRTQC 135
                  567889********************989999**986559**************99874 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (637 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       374  (0.091175); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 2472.85
//
Query:       MMETSP1061-20121228|42553_1  [L=3066]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (3066 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.21u 0.15s 00:00:01.36 Elapsed: 00:00:00.78
# Mc/sec: 5188.19
//
Query:       MMETSP1061-20121228|42559_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2166.82
//
Query:       MMETSP1061-20121228|42567_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.20
# Mc/sec: 1128.51
//
Query:       MMETSP1061-20121228|42576_1  [L=238]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (238 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1495.88
//
Query:       MMETSP1061-20121228|42579_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 936.49
//
Query:       MMETSP1061-20121228|42584_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1788.68
//
Query:       MMETSP1061-20121228|42592_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 805.13
//
Query:       MMETSP1061-20121228|42620_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|42617_1  [L=1784]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1784 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.13s 00:00:00.83 Elapsed: 00:00:00.51
# Mc/sec: 4617.03
//
Query:       MMETSP1061-20121228|42641_1  [L=176]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (176 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1010.00
//
Query:       MMETSP1061-20121228|42653_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|42665_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-14   50.7   0.0    3.9e-14   50.6   0.0    1.0  1  TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain
    7.1e-12   43.5   0.0    8.3e-12   43.2   0.0    1.0  1  TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA
    1.5e-09   35.6   0.0    1.6e-09   35.5   0.0    1.0  1  TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase
    1.8e-05   22.1   0.0      2e-05   22.0   0.0    1.0  1  TIGR01261 hisB_Nterm: histidinol-phosphatase
     0.0015   16.3   0.0     0.0017   16.2   0.0    1.1  1  TIGR01664 DNA-3'-Pase: DNA 3'-phosphatase
  ------ inclusion threshold ------
      0.011   12.0   0.0      0.013   11.8   0.0    1.1  1  TIGR01663 PNK-3'Pase: polynucleotide kinase 3'-phosphatase
      0.014   13.0   0.4       0.71    7.4   0.3    2.5  1  TIGR02253 CTE7: HAD hydrolase, TIGR02253 family


Domain annotation for each model (and alignments):
>> TIGR01656  Histidinol-ppas: histidinol-phosphate phosphatase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   0.0   6.6e-17   3.9e-14      39     118 ..       3      85 ..       1      87 [] 0.90

  Alignments for each domain:
  == domain 1    score: 50.6 bits;  conditional E-value: 6.6e-17
    TIGR01656  39 klkaaaytlvvvtnQqGvgrglfeledll.kvkgllre.llrq.kGvavdtvflcphkeedlcdcrKPkpglilealkrlgvd 118
                  +l++a+ +++ +tnQ+ vg+gl++ edl+ k++g+l+e ll q +  ++d++f+c+   + + + +KP+pg+i+ea++ ++v+
  MMETSP1061-20121228|42665_1   3 RLRRAGCKVALITNQSCVGKGLITKEDLAeKIHGRLQEmLLDQdQDAKFDHIFFCTSLSNSKDHRKKPNPGMIEEAMELFKVN 85 
                  6899************************7379******77777899**********9999998888**********9988875 PP

>> TIGR01662  HAD-SF-IIIA: HAD hydrolase, family IIIA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.2   0.0   1.4e-14   8.3e-12      37     106 ..       4      82 ..       1      86 [. 0.86

  Alignments for each domain:
  == domain 1    score: 43.2 bits;  conditional E-value: 1.4e-14
    TIGR01662  37 lkkeGykvvivtNqsgigrgk....esveevsekvesllee..lgvpidvliacp.hs..kceyrKpktgmleealkrl 106
                  l+++G kv+++tNqs +g+g+    + +e+++++++++l +  +++++d +++c   s  k++ +Kp++gm+eea++ +
  MMETSP1061-20121228|42665_1   4 LRRAGCKVALITNQSCVGKGLitkeDLAEKIHGRLQEMLLDqdQDAKFDHIFFCTsLSnsKDHRKKPNPGMIEEAMELF 82 
                  899*******************99877899*******99651167999******962267***************9977 PP

>> TIGR00213  GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   2.8e-12   1.6e-09      37     122 ..       3      85 ..       1      87 [] 0.86

  Alignments for each domain:
  == domain 1    score: 35.5 bits;  conditional E-value: 2.8e-12
    TIGR00213  37 elkklGyklvlvtnqsGiarGyftekqf.eqlteyldesl..aerdvdldGiyycphapeekeefkedcdcrkpkpglllqaakelkid 122
                  +l++ G k+ l+tnqs + +G  t++++ e++   l+e l  +++d ++d i++c   ++ k+        +kp+pg++ +a++ +k++
  MMETSP1061-20121228|42665_1   3 RLRRAGCKVALITNQSCVGKGLITKEDLaEKIHGRLQEMLldQDQDAKFDHIFFCTSLSNSKD------HRKKPNPGMIEEAMELFKVN 85 
                  678899******************99974678899**99967788899*********999933......4579*********9988875 PP

>> TIGR01261  hisB_Nterm: histidinol-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.4e-08     2e-05      40     113 ..       3      79 ..       1      86 [. 0.84

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.4e-08
    TIGR01261  40 klkeagyklvlvtnqdGlGtesfPkedf.dkphalmlqif..kseGivfddvlicphfledncacrkPkiklleeyl 113
                  +l+ ag k+ l+tnq  +G     ked+ +k h  + +++  + +  +fd+++ c ++ + + + +kP+ +++ee +
  MMETSP1061-20121228|42665_1   3 RLRRAGCKVALITNQSCVGKGLITKEDLaEKIHGRLQEMLldQDQDAKFDHIFFCTSLSNSKDHRKKPNPGMIEEAM 79 
                  8999***********************83455665555542377899**************************9866 PP

>> TIGR01664  DNA-3'-Pase: DNA 3'-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   2.8e-06    0.0017      53     118 ..       3      79 ..       1      86 [. 0.67

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 2.8e-06
    TIGR01664  53 eLedegyvivifsNqsgiirvkksvekftnkilailkklk...........vPikvliAtkaskyRKPmtGmveyle 118
                  +L   g ++ +++Nqs ++++  + e   +ki+  l+++            + + +   + +++ +KP++Gm+e  +
  MMETSP1061-20121228|42665_1   3 RLRRAGCKVALITNQSCVGKGLITKEDLAEKIHGRLQEMLldqdqdakfdhIFFCTSLSNSKDHRKKPNPGMIEEAM 79 
                  6888999*********99998866666666665555544434446654443333444445577899******98644 PP

>> TIGR01663  PNK-3'Pase: polynucleotide kinase 3'-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   2.1e-05     0.013     205     236 ..       4      35 ..       1      45 [. 0.90

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 2.1e-05
    TIGR01663 205 lekeGyklvlftnqgsiarGklnleefkvkvk 236
                  l++ G k+ l tnq  +++G +  e++  k++
  MMETSP1061-20121228|42665_1   4 LRRAGCKVALITNQSCVGKGLITKEDLAEKIH 35 
                  7889***********************99996 PP

>> TIGR02253  CTE7: HAD hydrolase, TIGR02253 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.4   0.3    0.0012      0.71     106     120 ..       4      18 ..       1      87 [] 0.41

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.0012
    TIGR02253 106 LresGyrlgliTdgl 120
                  Lr++G +++liT+  
  MMETSP1061-20121228|42665_1   4 LRRAGCKVALITNQS 18 
                  666666666666632 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 546.81
//
Query:       MMETSP1061-20121228|42672_1  [L=328]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-12   43.9   0.0    6.2e-12   43.3   0.0    1.2  1  TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
    1.5e-06   25.3   0.0    5.4e-06   23.4   0.0    1.7  2  TIGR03056 bchO_mg_che_rel: putative magnesium chelatase accessory protein
    5.8e-06   24.0   0.0      1e-05   23.1   0.0    1.4  1  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
      3e-05   21.4   0.0    4.8e-05   20.7   0.0    1.2  1  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase
  ------ inclusion threshold ------
      0.011   13.1   0.0      0.019   12.4   0.0    1.3  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases
      0.019   11.8   0.0      0.027   11.3   0.0    1.2  1  TIGR01836 PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit


Domain annotation for each model (and alignments):
>> TIGR03695  menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.3   0.0   9.1e-15   6.2e-12       4      94 ..      50     151 ..      47     159 .. 0.78

  Alignments for each domain:
  == domain 1    score: 43.3 bits;  conditional E-value: 9.1e-15
    TIGR03695   4 vlvlLHGflgskedwqalieeleekfsv.........lalDLpgHGkskslkekeakdfeeaaqellkellekl..kiekviLvGYSlGGRialalaleape 94 
                   ++ LHG +++ ++++al + l +k+ +         +a+DLpgHG s++++ + ++++++   + + e+ ++l  k e+++L+G S+GG i l +a+++p 
  MMETSP1061-20121228|42672_1  50 RILALHGWMDNCATFDALSNGLMNKLATgnfvtdidfVAIDLPGHGYSSHKSLDGPTSVQAEYCYYVFEIVRQLqwKPEDLTLIGHSMGGSISLMYAAAFPV 151
                  5899*************99877555444444455555**********998877777777766555588888888557789*****************99986 PP

>> TIGR03056  bchO_mg_che_rel: putative magnesium chelatase accessory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.4   0.0   7.9e-09   5.4e-06       7     119 ..      28     152 ..      22     161 .. 0.70
   2 ?   -0.8   0.0       0.2   1.4e+02     208     277 ..     256     326 ..     221     327 .. 0.74

  Alignments for each domain:
  == domain 1    score: 23.4 bits;  conditional E-value: 7.9e-09
    TIGR03056   7 aarrvdvgpfdWlvrdeGpaaGPvllllhGagasshsfrk....lvpllaa.....rfrvvapdlPGhGftratarfrfs.lka.maedlakllaaedlsPd..aviGhsaGaaialrlaldlpvr 119
                  ++  +++++  W+ + +G  +   +l lhG      +f      l+ +la+         va+dlPGhG++       ++ ++a     + +++ +++++P+  ++iGhs G++i l  a   pv+
  MMETSP1061-20121228|42672_1  28 CSDGMKIAGKRWTTK-NGHGKKVRILALHGWMDNCATFDAlsngLMNKLATgnfvtDIDFVAIDLPGHGYSSHKSLDGPTsVQAeYCYYVFEIVRQLQWKPEdlTLIGHSMGGSISLMYAAAFPVQ 152
                  556667778888765.466567788889998777777765111256666652111134569*********98776655541443245678899********84468*************9999994 PP

  == domain 2    score: -0.8 bits;  conditional E-value: 0.2
    TIGR03056 208 elaplqralpriavPvlliageedkavppdvskeaatrlplatlrevpGlGhlvhee..dadgvaglildav 277
                  +l+ + +++ + +  + ++++ +    pp+   ++ + l     r +pG  h  h +  da+gv+  i  ++
  MMETSP1061-20121228|42672_1 256 QLDQMYKDVVNQKTSTCVLTAIDGMPFPPESISRLNALLKPEVCRSLPGS-HHFHSDpgDAEGVVDAIASWL 326
                  56666666666666666677777777888888888888888899999995.555554237888888888776 PP

>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.0   1.5e-08     1e-05       6     131 ..      50     197 ..      44     203 .. 0.60

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 1.5e-08
    TIGR01738   6 klvLihGWglnaevfadlveeLsah.....f....tlslvDLPGyGdsael...ralslae....vaeai...laqapakaiwlGWsLGGLvalhlalthpdkvrsLvlvass...pk..faaredwpegieadvltkfaeqlksdyqkt 131
                  +++ +hGW  n + f+ l + L ++     f       ++DLPG+G+s++     + s+++     +  i   l+  p++  ++G s+GG ++l  a+ +p  v+ L+++ +    pk   +  ++ +  i+  + +k+   +  ++q  
  MMETSP1061-20121228|42672_1  50 RILALHGWMDNCATFDALSNGLMNKlatgnFvtdiDFVAIDLPGHGYSSHKsldGPTSVQAeycyYVFEIvrqLQWKPEDLTLIGHSMGGSISLMYAAAFP--VQRLCMLDTLgpmPKppETISKNLRSNIKIRAQGKMPCSIYPNFQTA 197
                  56679**********9987766554111122211145689******954421124666654222223334122344688899*****************99..58888876531112211344555555666666666666666666655 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0     7e-08   4.8e-05      35     110 ..      79     157 ..      69     166 .. 0.81

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 7e-08
    TIGR02427  35 altkdfrvlryDkrGHGlS..dvpegpysie.dladdvlallDalgie..kaavcGlSlGGliaqaLaarrpdrvealvls 110
                  ++ +d+  +++D +GHG+S  +  +gp s++ ++   v +++ +l+++  + +++G S+GG i+++ aa  p  v++l ++
  MMETSP1061-20121228|42672_1  79 NFVTDIDFVAIDLPGHGYSshKSLDGPTSVQaEYCYYVFEIVRQLQWKpeDLTLIGHSMGGSISLMYAAAFP--VQRLCML 157
                  67789999***********666778999996368999********996337899*********999888774..5555555 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.4   0.0   2.8e-05     0.019      14     117 ..      37     149 ..      25     178 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 2.8e-05
    TIGR01250  14 vlftkvkeegekikllvlHGGPgssheyleslkellke.........gvevilYDQLGsgkSdqPddsdeklltidrfvdEleevre.kLaldkfyllgqSwGglLaqeYalky 117
                  + +t ++++g+k+++l+lHG   +++  ++ l++ l +         +++++  D  G g+S++ +    +  + ++     e vr+ + + + + l+g+S Gg + + Ya  +
  MMETSP1061-20121228|42672_1  37 KRWTTKNGHGKKVRILALHGW-MDNCATFDALSNGLMNklatgnfvtDIDFVAIDLPGHGYSSHKSLDGPTSVQAEYCYYVFEIVRQlQWKPEDLTLIGHSMGGSISLMYAAAF 149
                  46999**************85.67777777776543322333223334677888999*****99988778889999999999999983345566****************9766 PP

>> TIGR01836  PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0     4e-05     0.027     123     158 ..     114     150 ..     106     180 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 4e-05
    TIGR01836 123 kkavdkikrts.eldkisllGiCqGGtfsliyaaLee 158
                  +   +++++ + + ++++l+G  +GG++sl+yaa ++
  MMETSP1061-20121228|42672_1 114 YYVFEIVRQLQwKPEDLTLIGHSMGGSISLMYAAAFP 150
                  5555666665426789*****************9876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (328 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1546.16
//
Query:       MMETSP1061-20121228|42678_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 373.97
//
Query:       MMETSP1061-20121228|42673_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.3e-16   56.6  11.9    3.8e-08   31.6   0.3    4.4  3  TIGR00494 crcB: protein CrcB


Domain annotation for each model (and alignments):
>> TIGR00494  crcB: protein CrcB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0     0.041   1.7e+02       4      21 ..     113     130 ..     110     140 .. 0.81
   2 !   25.0   1.6   9.8e-10     4e-06      28      89 ..     161     238 ..     149     264 .. 0.67
   3 !   31.6   0.3   9.2e-12   3.8e-08       9     109 ..     487     600 ..     481     604 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.041
    TIGR00494   4 ilGgalGallRyllskvl 21 
                   +G+++G+l+R  l++++
  MMETSP1061-20121228|42673_1 113 GIGAIFGTLVRLILAQLF 130
                  79*********9999877 PP

  == domain 2    score: 25.0 bits;  conditional E-value: 9.8e-10
    TIGR00494  28 eslPlgtltvnliGalilGlla.............ylsqlavisad...lklliatGflGalttFstfslevlkLlqe 89 
                  e + ++ l +nl+G++i+Gll+              + q+ +i ++   ++l + tGf+G+lttFs++  e+++L+  
  MMETSP1061-20121228|42673_1 161 EGIIFADLPANLLGSFIMGLLQdgaalglavsvpiAFVQPSNIFQSfdiWHLALKTGFCGSLTTFSAWNSEMVVLMVG 238
                  55667778899999999998742222222111111122333443332237889********************99864 PP

  == domain 3    score: 31.6 bits;  conditional E-value: 9.2e-12
    TIGR00494   9 lGallRyllsk.......vlsallkgeslPlgtltvnliGali.lGllaylsqlavisad..lkl....liatGflGalttFstfslevlkLlqegrlkeavlyilvtlvgslig 109
                  +GallR+ ls         +   +    lP+gtl++n++Ga++ + ++++  +l++ +++  + +     i +Gf G l t stf  ev kL ++ +  ++  yil+tlv+s ++
  MMETSP1061-20121228|42673_1 487 PGALLRWKLSSwngklgdYVPRYHRMSWLPIGTLAANVLGAMVsISMVGWEYNLEISGSSgfWGIatvrAIKIGFSGCLSTVSTFVSEVHKLTNMRQ-DRGYKYILITLVLSAVA 600
                  6777777655411111113455677788*************86588899988777765543356522234889******************998866.799*********99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.34
# Mc/sec: 2348.63
//
Query:       MMETSP1061-20121228|42690_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 315.63
//
Query:       MMETSP1061-20121228|42696_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00031   17.9   0.0    0.00031   17.9   0.0    1.0  1  TIGR02650 RNase_Z_T_toga: ribonuclease Z, Thermotoga type


Domain annotation for each model (and alignments):
>> TIGR02650  RNase_Z_T_toga: ribonuclease Z, Thermotoga type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   7.5e-08   0.00031     140     189 ..       2      49 ..       1      61 [. 0.77

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 7.5e-08
    TIGR02650 140 fgyhifevrrklkkefqgldskviarlvkekgrdfvteeyhkkvltisgd 189
                  +gy  f +r  lk+e++gl  ++i rl +e g ++ t e  +  l   gd
  MMETSP1061-20121228|42696_1   2 LGYSFFRLRNGLKEEYRGLPGREIGRLKRE-GVEVTTVEE-EPYLCFMGD 49 
                  69************************9666.666555553.334555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.06u 0.19s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 306.40
//
Query:       MMETSP1061-20121228|42710_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|42701_1  [L=230]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (230 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.31
# Mc/sec: 979.27
//
Query:       MMETSP1061-20121228|42720_1  [L=116]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (116 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 695.94
//
Query:       MMETSP1061-20121228|42743_1  [L=153]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-12   42.5   0.0      1e-11   42.4   0.0    1.1  1  TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin
  ------ inclusion threshold ------
       0.03   10.9   0.0       0.03   10.9   0.0    1.1  1  TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family


Domain annotation for each model (and alignments):
>> TIGR03921  T7SS_mycosin: type VII secretion-associated serine protease mycosin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.4   0.0     5e-15     1e-11     226     288 ..      11      76 ..       4     152 .. 0.76

  Alignments for each domain:
  == domain 1    score: 42.4 bits;  conditional E-value: 5e-15
    TIGR03921 226 leGtSfAaplVsgvAaLvrskfpeltaaqvirrleaTarkpar...grddsvGaGvvdpvaAltee 288
                   +GtS+A p V+g+Aa +++ fpe t+ q+++ +++Ta++ ++     ++ +G G+++  aA    
  MMETSP1061-20121228|42743_1  11 SSGTSMAGPHVAGIAAQLKAFFPECTNYQIRNAMVRTAKAVGEypgHCNNGYGSGLIQGKAAYDLI 76 
                  58*************************************999988667999*******99996554 PP

>> TIGR03895  protease_PatA: cyanobactin maturation protease, PatA/PatG family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   1.5e-05      0.03     156     202 ..       8      50 ..       2     129 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 1.5e-05
    TIGR03895 156 tvrksGtslAtavvtgvaalLlslqlkrgekpdpeavrtallesAlp 202
                    ++sGts+A + v+g+aa+L +   +        ++r+a++ +A +
  MMETSP1061-20121228|42743_1   8 YASSSGTSMAGPHVAGIAAQLKAFFPE----CTNYQIRNAMVRTAKA 50 
                  5789****************9876543....4456777777777765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (153 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.09u 0.18s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 841.43
//
Query:       MMETSP1061-20121228|42754_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|42760_1  [L=522]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-27   93.7   0.0    9.3e-27   91.9   0.0    1.9  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    7.9e-10   36.2   0.0    2.7e-09   34.4   0.0    1.8  1  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
     0.0023   15.5   0.0     0.0044   14.6   0.0    1.4  1  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.9   0.0   6.8e-30   9.3e-27      69     276 ..     258     486 ..     165     511 .. 0.74

  Alignments for each domain:
  == domain 1    score: 91.9 bits;  conditional E-value: 6.8e-30
    TIGR00005  69 edkpldilfeDedilvidKPsglvvhptggyekntvl..nallahlkeel..........vsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefkskegtvdap..larven..kkglvavakss.gkeavTvfkvler.....dekaslvelkllTGRtHQiRVHlq.ylghplagDplYgnksvkgksleaeaklkrqaLhaselgfthpat 276
                  +++pl +l+eD ++ ++ KP+g+ +   +g   +++   ++l   l+  l          +  + + hRLD+   G +vvakt+ka  e+ +++++ktv+keY+a+v ge+ s+ +  ++   ++ +++  ++ +++++++   k+++T   vl       ++  + ++l ++TGR HQ+R+H +  lg p++gD+lY +++ + + ++  +  ++++L  +++ + hp  
  MMETSP1061-20121228|42760_1 258 SHSPLRVLYEDHCMAIVCKPAGIHTMSWSGSLGKSLCldEILPLLLTPPLaeeldeddepLPAPLPRHRLDQRVAGPVVVAKTRKACVEIGRAFEDKTVTKEYRAIVVGEVGSDALAKNKDgiVLENDStlSQPSFTIRSDVdDKPSETGVVVLGTtpcnvNGVLTDLKLFPRTGRRHQLRIHCAgVLGTPILGDDLYWEEEHQ-EGRS-VRRRQGLYLYCKKVTLGHPLV 486
                  4456********************99988777666532244444433333556788899999999**********************************************97776665532144443311345678887668******999987666666899999****************98579***********97773.3334.445589999999999999865 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.4   0.0     2e-12   2.7e-09      48     171 ..     325     461 ..     322     481 .. 0.76

  Alignments for each domain:
  == domain 1    score: 34.4 bits;  conditional E-value: 2e-12
    TIGR01621  48 hrldkvtsGilllalnaesaselsrlfaekkikktylal......sdkkpkkkqGliiGdmeksregawklv.rskenpa...itrfesvsiaeklrlfilk..phtGkthqlrvalk.slGsailGdslygkaees 171
                  hrld+  +G +++a+ +++  e+ r f +k + k y a+      sd   k k G++  +     + ++ +  +  + p+   +  + +  ++ +  l  lk  p+tG+ hqlr+     lG++ilGd ly + e+ 
  MMETSP1061-20121228|42760_1 325 HRLDQRVAGPVVVAKTRKACVEIGRAFEDKTVTKEYRAIvvgevgSDALAKNKDGIVLENDSTLSQPSFTIRsDVDDKPSetgVVVLGTTPCNVNGVLTDLKlfPRTGRRHQLRIHCAgVLGTPILGDDLYWEEEHQ 461
                  9************************************98776666688899****9987766666666665414455565111444455556655555433333***********875269**********885544 PP

>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.2e-06    0.0044      35     126 ..     325     439 ..     309     450 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.2e-06
    TIGR00093  35 GRLDrdseGlllltddgelqhrlthp..ekevektYlvqvegsvtdedlealrkGvkledektkpak.lklikepel....................ktklrvtlteGrnrqvrR 126
                   RLD+   G +++++  +    + ++  +k+v k+Y + v g+v  ++l++ + G+ le+  t ++   ++ +++++                     t l++    Gr +q+r 
  MMETSP1061-20121228|42760_1 325 HRLDQRVAGPVVVAKTRKACVEIGRAfeDKTVTKEYRAIVVGEVGSDALAKNKDGIVLENDSTLSQPsFTIRSDVDDkpsetgvvvlgttpcnvngvLTDLKLFPRTGRRHQLRI 439
                  59999999999999999998888775337789*****************************999655044444444477777777777777777665556666667777777775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (522 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2296.61
//
Query:       MMETSP1061-20121228|42804_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|42815_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 408.54
//
Query:       MMETSP1061-20121228|42819_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1061-20121228|42820_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1061-20121228|42829_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|42843_1  [L=436]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (436 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       328  (0.079961); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.35
# Mc/sec: 1644.21
//
Query:       MMETSP1061-20121228|42869_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 415.77
//
Query:       MMETSP1061-20121228|42868_1  [L=221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   12.9   1.6      0.029   12.6   0.5    1.6  2  TIGR02811 formate_TAT: formate dehydrogenase region TAT target


Domain annotation for each model (and alignments):
>> TIGR02811  formate_TAT: formate dehydrogenase region TAT target
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.6   0.0      0.78   3.2e+03      14      28 ..       4      18 ..       3      19 .. 0.79
   2 ?   12.6   0.5     7e-06     0.029       4      39 ..      26      61 ..      24      71 .. 0.87

  Alignments for each domain:
  == domain 1    score: -3.6 bits;  conditional E-value: 0.78
    TIGR02811 14 LLkglavgaaagava 28
                 +L++l v++ + +va
  MMETSP1061-20121228|42868_1  4 ILRKLCVVSCILSVA 18
                 699999999887776 PP

  == domain 2    score: 12.6 bits;  conditional E-value: 7e-06
    TIGR02811  4 eqkadlsRRdLLkglavgaaagavaaatgrvasasa 39
                 ++++ +sRR    + + + aag v+a+t+ v sa a
  MMETSP1061-20121228|42868_1 26 QKDPSVSRRAAFVQTTSVVAAGLVTAGTSSVNSAVA 61
                 48899*******9*****************998755 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1325.89
//
Query:       MMETSP1061-20121228|42883_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.035   12.3   2.8        2.6    6.4   0.2    2.2  2  TIGR04104 cxxc_20_cxxc: cxxc_20_cxxc protein


Domain annotation for each model (and alignments):
>> TIGR04104  cxxc_20_cxxc: cxxc_20_cxxc protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.2   0.00062       2.6      20      43 ..      58      81 ..      48      86 .. 0.80
   2 ?    6.3   0.1   0.00067       2.7       2      37 ..     148     183 ..     147     187 .. 0.74

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.00062
    TIGR04104 20 fskkkkikCpnCgekqyltaksrk 43
                 f+ +++  C+ C+++++ ta+ ++
  MMETSP1061-20121228|42883_1 58 FRSRNPRDCSCCQTRHHTTASIAQ 81
                 66689999**********998665 PP

  == domain 2    score: 6.3 bits;  conditional E-value: 0.00067
    TIGR04104   2 kCknCkekfsykellkslfsk.kkkikCpnCgekqyl 37 
                  +C+ C ++ s k+  ++ ++     + Cp Cg+++ +
  MMETSP1061-20121228|42883_1 148 TCTVCDTR-SAKQFTEKAYQNgVVIVTCPGCGNRHLI 183
                  68888877.44555566666658899*******9976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                      139  (0.0338859); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1105.98
//
Query:       MMETSP1061-20121228|42886_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.21
# Mc/sec: 1464.45
//
Query:       MMETSP1061-20121228|42892_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.24
# Mc/sec: 1963.34
//
Query:       MMETSP1061-20121228|42889_1  [L=384]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (384 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 2203.64
//
Query:       MMETSP1061-20121228|42904_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       217  (0.052901); expected 82.0 (0.02)
Passed bias filter:                      162  (0.0394929); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|42906_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.24
# Mc/sec: 1297.89
//
Query:       MMETSP1061-20121228|42917_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 747.94
//
Query:       MMETSP1061-20121228|42918_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 364.54
//
Query:       MMETSP1061-20121228|42923_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-06   25.0   0.0    2.5e-06   25.0   0.0    1.0  1  TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein


Domain annotation for each model (and alignments):
>> TIGR00384  dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0     6e-10   2.5e-06       1      45 [.       5      49 ..       5      50 .] 0.89

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 6e-10
    TIGR00384  1 vlRfnpdvdekphlesyevevdekt.lsvLdaLeqikkeqdaslaf 45
                 v+R+np++d++p++++ ++++  ++ ++vLd L+ +k ++d+sl +
  MMETSP1061-20121228|42923_1  5 VYRYNPETDDAPYMQDIHIDIPGGKdIMVLDLLQLLK-DKDPSLGY 49
                 89****************999876669*******999.67999877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 314.26
//
Query:       MMETSP1061-20121228|42949_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       137  (0.0333983); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 444.59
//
Query:       MMETSP1061-20121228|42965_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 406.53
//
Query:       MMETSP1061-20121228|42973_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1062.20
//
Query:       MMETSP1061-20121228|42967_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-25   85.8  11.8    1.4e-24   84.7   8.2    1.5  1  TIGR00659 TIGR00659: TIGR00659 family protein


Domain annotation for each model (and alignments):
>> TIGR00659  TIGR00659: TIGR00659 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.7   8.2   3.4e-28   1.4e-24      58     216 ..     331     494 ..     319     501 .. 0.87

  Alignments for each domain:
  == domain 1    score: 84.7 bits;  conditional E-value: 3.4e-28
    TIGR00659  58 aevlndlLqpavvalaiPLYkqlkvikkyakeiiltvvvgsvvailsgtllalllgaape.....lva.sllPksvttpiamevsekigGiPavtavlviltgllGavfgplllkklrvkdkvarGlalGtsshalGtariieldelaGavsslslvLagiitsl 216
                  +++l + L+p+vv++a+ +Y + k++ ++ k+++ +++v+s+ a++ ++    l+ ++       ++  s+l + +tt++a+ v++++gG  a++ v+v+ltg++Ga +g +ll++++++d + rGla+G+++ +lG ++++  +  a  +++++++L+++  ++
  MMETSP1061-20121228|42967_1 331 GDLLLFCLGPSVVSFAVSMYSRKKIMLENFKIVVAAIMVSSLGALFGTAAFTNLIRLGGSsgnalMIRlSMLARNITTALAIPVTQMLGGDIAIAVVVVVLTGIIGAQYGRKLLDLVNIQDPITRGLAVGSAAQGLGVSSMVP-EVDAFPFAAMAMALTAVAGTI 494
                  5678899***************************************99887766544321112336668********************************************************************998764.455678999999999987654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       213  (0.0519259); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2589.02
//
Query:       MMETSP1061-20121228|42976_1  [L=594]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.081    8.7   1.7       0.14    8.0   1.2    1.2  1  TIGR00605 rad4: DNA repair protein rad4


Domain annotation for each model (and alignments):
>> TIGR00605  rad4: DNA repair protein rad4
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   1.2   3.3e-05      0.14      13      52 ..     485     524 ..     478     536 .. 0.90

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 3.3e-05
    TIGR00605  13 fsasedewkpskdvkggessddddsdfdelqaeggaagss 52 
                   sas d      d  gge  d++ds+ de qa g + gs 
  MMETSP1061-20121228|42976_1 485 VSASHDGTMRVWDCSGGEEDDEQDSEDDESQAGGESVGSK 524
                  58999999999*************************9996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (594 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 2903.76
//
Query:       MMETSP1061-20121228|42991_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 359.97
//
Query:       MMETSP1061-20121228|42988_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       259  (0.0631399); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.17s 00:00:00.53 Elapsed: 00:00:00.28
# Mc/sec: 1852.40
//
Query:       MMETSP1061-20121228|43048_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 496.53
//
Query:       MMETSP1061-20121228|43042_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.9e-19   66.6   0.0    6.5e-19   66.2   0.0    1.1  1  TIGR00266 TIGR00266: TIGR00266 family protein


Domain annotation for each model (and alignments):
>> TIGR00266  TIGR00266: TIGR00266 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.2   0.0   1.6e-22   6.5e-19       3     209 ..      23     240 ..      20     249 .. 0.84

  Alignments for each domain:
  == domain 1    score: 66.2 bits;  conditional E-value: 1.6e-22
    TIGR00266   3 ykirgrpsysvleltLkpgeevlvetgalvsmdrsvelktelkGGlLdalkrsllgeslflnaftae.qsegslqLapalpGdiir.lletekgillqsgaflassegv..eidtkfaglk......tffadeglFlLklqgkGd.lflssyGaleqls..vneslvvdtdhivaFedtLdykvskqvdglkgdvlsGkGlv.aefkGkGkvylqsRsvss 209
                  y+i g     +++  +++g +++  +ga+ +m++++++  +l  Gl +++ r  +g slf  ++ +e    g ++++p +pG i+   +  ++ i++  ++fl ++ g+   + t  ag++       f      F ++ + +G+  fl   G++ + +    esl vd   i  Fe +++  v+  v+g+ +   +G+G   +ef+G G+vylqs s++ 
  MMETSP1061-20121228|43042_1  23 YEILGTD-AQIVQFPVRAGRQIMCFAGAMAYMSEGMKMDCKL-SGLGNTFGRLAGGGSLFQITYSNEsSRDGYIGMTPDYPGVIVPiNMSRTGKIVALRDSFLCATVGLghTMTTVGAGFNptnsamAFCCSGMDFIVQTVENGEwAFLMAMGTVIKKElkSGESLLVDGTSILCFESSVQVDVRP-VGGIAAMCCGGEGIFnTEFTGPGTVYLQSLSIDK 240
                  7788777.67889999**************************.89*********************977789************9944566778*********99876532333333333211111156666667*********956*******9876633679********************99.*************86379*************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.12s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1555.18
//
Query:       MMETSP1061-20121228|43043_1  [L=703]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00057   16.0   0.0    0.00096   15.2   0.0    1.3  1  TIGR04075 bacter_Pnkp: polynucleotide kinase-phosphatase


Domain annotation for each model (and alignments):
>> TIGR04075  bacter_Pnkp: polynucleotide kinase-phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.3e-07   0.00096     181     264 ..     174     248 ..     156     256 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.3e-07
    TIGR04075 181 PfdiiGdvhGCldeleelleklGyeveeeeegkavevthpegrkavflGdlvdrGpdspdvlrlvmsm..vkagaalcvpGnheek 264
                  P  i Gd+hG l++l+ + +++   +           ++ ++ + +flGd+vdrG +  +v+    sm   +  + + ++Gnhe++
  MMETSP1061-20121228|43043_1 174 PCYIFGDIHGNLEDLHFFSDNIWR-L---------G-MSLTAGNFLFLGDYVDRGMNCLEVVAYLLSMklQNPHKVFLLRGNHETR 248
                  666777777776666544333211.1.........1.122344679***************98665551166778999*****986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (703 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       146  (0.0355924); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.13s 00:00:00.48 Elapsed: 00:00:00.34
# Mc/sec: 2729.07
//
Query:       MMETSP1061-20121228|43047_1  [L=550]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (550 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2592.64
//
Query:       MMETSP1061-20121228|43068_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1376.46
//
Query:       MMETSP1061-20121228|43071_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 930.21
//
Query:       MMETSP1061-20121228|43088_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 546.81
//
Query:       MMETSP1061-20121228|43098_1  [L=605]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   11.1   0.0      0.089    9.9   0.0    1.6  2  TIGR00587 nfo: apurinic endonuclease (APN1)


Domain annotation for each model (and alignments):
>> TIGR00587  nfo: apurinic endonuclease (APN1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.9   0.0   2.2e-05     0.089     209     252 ..     207     250 ..     186     258 .. 0.90
   2 ?   -3.0   0.0      0.19   7.6e+02       8      45 ..     420     460 ..     417     482 .. 0.60

  Alignments for each domain:
  == domain 1    score: 9.9 bits;  conditional E-value: 2.2e-05
    TIGR00587 209 eylkaiHlNdskaalGskkDrHenigeGliGldafrlllkderl 252
                  + +kai lN   +++G+ + +   ig+G+ G+da+++ll++ ++
  MMETSP1061-20121228|43098_1 207 KVVKAIPLNHLPKHIGKTRQKYMVIGAGKSGVDAINYLLDHGNV 250
                  789***********************************998766 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.19
    TIGR00587   8 saagk.llaalkeaveiga..nsfalflksqrkwkrkklee 45 
                  s+++  l+a + +  + +a  nsf ++ + +r+ k+++ ++
  MMETSP1061-20121228|43098_1 420 SSQAAfLEANFDDSEAGDAvkNSFCFYPRGPRQLKETTHQQ 460
                  55555345555444444443389999999999987665444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (605 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.28
# Mc/sec: 2753.57
//
Query:       MMETSP1061-20121228|43115_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 415.77
//
Query:       MMETSP1061-20121228|43118_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 439.96
//
Query:       MMETSP1061-20121228|43122_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.2e-06   25.3   0.0    1.9e-06   24.6   0.0    1.2  1  TIGR02717 AcCoA-syn-alpha: acetyl coenzyme A synthetase (ADP forming), alpha domain


Domain annotation for each model (and alignments):
>> TIGR02717  AcCoA-syn-alpha: acetyl coenzyme A synthetase (ADP forming), alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.6   0.0   4.6e-10   1.9e-06       4      61 ..       6      65 ..       4      74 .. 0.87

  Alignments for each domain:
  == domain 1    score: 24.6 bits;  conditional E-value: 4.6e-10
    TIGR02717  4 lfnPksvaviGAsekeekvGyailknliesgykGkiypvnpkae....eilgvkaYksvkei 61
                 l + k va++GAs+k+ +  y+i+  l+++gy  ++ypvnp++     +i g  +Y+s++e+
  MMETSP1061-20121228|43122_1  6 LSESKTVALVGASNKKHRDSYEIMGLLLDHGY--DVYPVNPNVAklgeTIHGRTVYSSLNEL 65
                 667899************************99..5******9754444899*******9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.31
# Mc/sec: 889.86
//
Query:       MMETSP1061-20121228|43131_1  [L=174]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (174 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.36
# Mc/sec: 637.95
//
Query:       MMETSP1061-20121228|43158_1  [L=185]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-38  129.1   0.0      5e-38  128.9   0.0    1.1  1  TIGR03326 rubisco_III: ribulose bisphosphate carboxylase, type III
    0.00085   15.8   0.0     0.0015   15.0   0.0    1.4  2  TIGR03332 salvage_mtnW: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase


Domain annotation for each model (and alignments):
>> TIGR03326  rubisco_III: ribulose bisphosphate carboxylase, type III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.9   0.0   2.4e-41     5e-38       2     158 ..      27     184 ..      26     185 .] 0.95

  Alignments for each domain:
  == domain 1    score: 128.9 bits;  conditional E-value: 2.4e-41
    TIGR03326   2 yvdksyePskddlvavfriepaeGvsieeaagrvasessiGtWtalqtekdeervkklsakvydleelGdgs..slvkiayPlelfeegnlpqllasiaGnifGmkavkglrlldlelPeelvkefkGPqfGiegvrelleikdrPllatvpkPkvGls 158
                  y d sy  +  d++a fri+p  Gv   eaa++va+ess+ tWt + t      +++ +ak+y ++ + + s    + iay  +lfeeg+l++l asi Gn+fG kav +lrl+d+++P++++k+f+GP+ Gi + re l+    Pll++ +kPk+Gls
  MMETSP1061-20121228|43158_1  27 YWDASYAVKTTDVLALFRITPQPGVDPVEAAAAVAGESSTATWTVVWTDLL-TACDRYRAKAYRVDPVPNTSdvFFAFIAYECDLFEEGSLSNLTASIIGNVFGFKAVSALRLEDMRIPHSYLKTFQGPATGIVVERERLNKYGTPLLGATVKPKLGLS 184
                  7899******************************************77766.7899999****999988766446789*******************************************************************************98 PP

>> TIGR03332  salvage_mtnW: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.9   0.0       0.2     4e+02     260     303 ..      53      95 ..      36      99 .. 0.63
   2 !   15.0   0.0   7.4e-07    0.0015      89     150 ..     121     181 ..     104     184 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.9 bits;  conditional E-value: 0.2
    TIGR03332 260 pimahpavsgaltssefygvssslllgkllryagadfslfpspy 303
                  p+ a  av+g  +++  + v  + ll    ry    + + p p 
  MMETSP1061-20121228|43158_1  53 PVEAAAAVAGESSTAT-WTVVWTDLLTACDRYRAKAYRVDPVPN 95 
                  6777788888755554.455555566677777777777766665 PP

  == domain 2    score: 15.0 bits;  conditional E-value: 7.4e-07
    TIGR03332  89 pallttvfgklsldgevklidlefsdefkralpgpkfgvdgirkklgvferpllmsifkgvi 150
                   +++  vfg  ++   ++l d+++++++ +++ gp  g+   r++l+++  pll +  k  +
  MMETSP1061-20121228|43158_1 121 ASIIGNVFGFKAV-SALRLEDMRIPHSYLKTFQGPATGIVVERERLNKYGTPLLGATVKPKL 181
                  5677788887666.579*************************************98887655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (185 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1061.65
//
Query:       MMETSP1061-20121228|43166_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 502.82
//
Query:       MMETSP1061-20121228|43180_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|43210_1  [L=137]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (137 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 753.44
//
Query:       MMETSP1061-20121228|43217_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      8e-13   46.4   0.1    1.3e-12   45.7   0.0    1.3  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   0.0   3.1e-16   1.3e-12       3      56 ..      32      86 ..      30      87 .. 0.92

  Alignments for each domain:
  == domain 1    score: 45.7 bits;  conditional E-value: 3.1e-16
    TIGR01557  3 rvvWteelhrrFlqAvqklGgedkatPkkIlelm..kveklTreqvkSHlQkyrlk 56
                    Wtee hr F+  +  +G  + a P  Ile+m  kve +T e vkS lQkyr++
  MMETSP1061-20121228|43217_1 32 SDEWTEEQHREFVASIFDIGL-KNASPAVILENMtqKVESITSERVKSKLQKYRSE 86
                 568******************.999*********66699***************86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       303  (0.0738664); expected 82.0 (0.02)
Passed bias filter:                      172  (0.0419308); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 604.95
//
Query:       MMETSP1061-20121228|43223_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 541.16
//
Query:       MMETSP1061-20121228|43240_1  [L=683]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-67  225.5  34.2    5.9e-37  125.5  11.8    2.0  2  TIGR00795 lctP: transporter, lactate permease (LctP) family
  ------ inclusion threshold ------
       0.16   10.4   5.1       0.37    9.2   0.3    2.8  2  TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit


Domain annotation for each model (and alignments):
>> TIGR00795  lctP: transporter, lactate permease (LctP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.5  11.8   2.9e-40   5.9e-37       5     259 ..      56     311 ..      53     336 .. 0.91
   2 !  106.0   6.4   2.3e-34   4.6e-31     282     527 ..     424     677 ..     409     680 .. 0.81

  Alignments for each domain:
  == domain 1    score: 125.5 bits;  conditional E-value: 2.9e-40
    TIGR00795   5 dllsalvallPil.llllllvvlklkaykaalislllsviiallvykmpvevvaaavlkgalyglwpialviiaAvflyklsvksgafeiikesilsispdrriqvlligfcfgaflEGaaGFGtpvAItaalLvglGfkPlyaagLcLIantapvaFGavGiPilagaq..atklsaleisslvgiilvlisllipfllvalldgvkgiketfpavlvaglsfaiaqflisnvlGpelpsilsalvslvilalflka 259
                  d+++ + allPil l+++++ +    + k  ++  l++ +i l++y + +  +  +v+ g+  ++ pi ++i +A+ l++  ++++ +  + + +  +++ + +   ++ fcf+ ++EGa+GFGtp+A+ a++L+  G + l + ++ LI+nt ++ +GavG+Pi++g+   at+ + le+s  +g  l + +++   + + +l+ +  ik+++++v+++ l ++++   i+ v  +e+p++++++v+ + +al++++
  MMETSP1061-20121228|43240_1  56 DVMDVIFALLPILvLVVVTVKKCPWPTTKSLPFAALMLFLIRLMYYGIDPILTCGSVILGMHEAIAPI-TIIAGAMTLFETMEATKCMPYMMREMKALTNGHPVAECMLIFCFAYMIEGASGFGTPAALGAPMLISTGHPKLESVMVLLIFNTFATVWGAVGTPIWFGFAglATEEELLEVSYKAGLSLAVGAFILVPICMSFLVPFAVIKKNIVFVFLSLLVCVVPSAGIAVVS-YEFPALIGGMVGSILTALMIRF 311
                  689*********72556677778889999999*******************************88776.799*****************************999998899********************************************************998733566779************9998777777788899**********************9998776.*****************99997 PP

  == domain 2    score: 106.0 bits;  conditional E-value: 2.3e-34
    TIGR00795 282 iakivkAlsPfvllvlvivltsipafkalfkkggllielsltlevsllsqkilkllpivk...eatnldavfkldllsatgtsillaaivs.lvilrvkkskaigvfsetlkela..lpilsiilvlafalv.snysglsktlalalae.tGkaftlfspllGalGvfltGSdtssNllFgslQletaeqiglsevlllaantvGgvvgkmispqsiaiacaavglvgkEsdllkktvkysliyaiivgvvall 527
                  +++++   +P   +v++++lt+ip+f+ +   +     + ++l++  +++ +++l+ +++   +  nl+  + l++++ +++++ + + +  ++ + +k  k   vf    ++l   +++l  +l l+  l+ s +++    l+ +la+   + f+++spllGalG+f++GS t+sNl+Fg++Q+ ++e+ g s++ +la++  G+  g+ i+ ++i++ac+ +gl+  E+++l kt k+ l  + i+++v+l+
  MMETSP1061-20121228|43240_1 424 ATELIGRTFPIWGVVILLILTRIPQFHIKPYLTMTEPYFEINLNTYGVFRLSASLVLQLNnilSYPNLNWKYELLYIPFVIPFLAISVATMfIYRKDMKDAKPSDVFRTVASRLVnpFIALLGALSLVQLLIkSHMEAPAYLLGTVLADwFRQGFVVLSPLLGALGSFFSGSTTVSNLTFGTVQVIASEKSGFSKTSMLAMQVIGASAGNSICLNNIIAACTITGLAVGEGQILGKTYKFVLSSTSIATIVMLT 677
                  4567777899999*************99988888888899999999999999999999994444556677777777777776654433333244555666666788887777765114555555555533331455666779*******99************************************************************************************************9999875 PP

>> TIGR01195  oadG_fam: sodium pump decarboxylases, gamma subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.3     0.035        71      15      34 ..      58      77 ..      57      82 .. 0.91
   2 ?    9.2   0.3   0.00018      0.37      17      33 ..     268     284 ..     263     294 .. 0.82

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.035
    TIGR01195 15 mgiVflvLllLiyvvrgmgk 34
                 m ++f+ L +L++vv  ++k
  MMETSP1061-20121228|43240_1 58 MDVIFALLPILVLVVVTVKK 77
                 789************99887 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 0.00018
    TIGR01195  17 iVflvLllLiyvvrgmg 33 
                  iVf++L+lL++vv   g
  MMETSP1061-20121228|43240_1 268 IVFVFLSLLVCVVPSAG 284
                  9***********97665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (683 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.34u 0.10s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 3338.84
//
Query:       MMETSP1061-20121228|43260_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 542.62
//
Query:       MMETSP1061-20121228|43265_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 408.54
//
Query:       MMETSP1061-20121228|43298_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-10   39.0   0.0      2e-10   38.8   0.0    1.1  1  TIGR00199 cinA_cterm: competence/damage-inducible protein CinA C-terminal domain
    1.7e-09   34.7   0.0    1.9e-09   34.6   0.0    1.0  1  TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00199  cinA_cterm: competence/damage-inducible protein CinA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   9.8e-14     2e-10       2      52 ..      13      64 ..      12      77 .. 0.85

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 9.8e-14
    TIGR00199  2 serlkekgltvatAESctGGllaealtdisgaskyfegGvvaytne.vKikl 52
                  + lk+++ t+++AE c GGl+ + + +++gas +f gG vay+ +  K  l
  MMETSP1061-20121228|43298_1 13 VQSLKKHKKTLTVAEQCCGGLIQAGIMAQPGASSVFVGGSVAYNTKkTKPVL 64
                 689****************************************865134444 PP

>> TIGR00200  cinA_nterm: competence/damage-inducible protein CinA N-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.6   0.0     9e-13   1.9e-09     265     313 ..      12      60 ..       5      84 .. 0.82

  Alignments for each domain:
  == domain 1    score: 34.6 bits;  conditional E-value: 9e-13
    TIGR00200 265 vsaelkergitvavaesftGGllaelLtdqsGasdlfagGvvlyanevk 313
                  + + lk+++ t++vae++ GGl+ + +  q+Gas +f+gG v+y ++  
  MMETSP1061-20121228|43298_1  12 LVQSLKKHKKTLTVAEQCCGGLIQAGIMAQPGASSVFVGGSVAYNTKKT 60 
                  667899*************************************976533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 628.52
//
Query:       MMETSP1061-20121228|43302_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 496.53
//
Query:       MMETSP1061-20121228|43320_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 785.34
//
Query:       MMETSP1061-20121228|43329_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-25   85.5   0.1    1.1e-21   75.2   0.0    2.4  3  TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family
    6.2e-08   30.2   0.0    1.2e-07   29.3   0.0    1.5  1  TIGR00742 yjbN: tRNA dihydrouridine synthase A
    2.7e-05   21.7   0.0    4.6e-05   20.9   0.0    1.3  1  TIGR00736 nifR3_rel_arch: putative TIM-barrel protein
  ------ inclusion threshold ------
      0.019   12.5   0.0      0.045   11.3   0.0    1.6  2  TIGR01949 AroFGH_arch: predicted phospho-2-dehydro-3-deoxyheptonate aldolase
      0.021   12.0   0.0      0.038   11.2   0.0    1.3  1  TIGR03849 arch_ComA: phosphosulfolactate synthase


Domain annotation for each model (and alignments):
>> TIGR00737  nifR3_yhdG: putative TIM-barrel protein, nifR3 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.9   0.0    0.0004      0.33       6      49 ..      53      96 ..      49     114 .. 0.79
   2 !   75.2   0.0   1.4e-24   1.1e-21      56     225 ..     136     310 ..     119     327 .. 0.85
   3 ?   -3.1   0.0      0.94   7.7e+02      31      43 ..     347     359 ..     329     361 .. 0.71

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.0004
    TIGR00737  6 LksrvvlaPlagvtdlafRrlvkeyeaglvvsEmvssealveks 49
                 L+    laP+   + ++ R l+ +y+a ++++E + +++l ++ 
  MMETSP1061-20121228|43329_1 53 LHKGFALAPMVRASTTPLRLLALQYGADFTYTEELVDRSLSQTL 96
                 5666789*************************988877766544 PP

  == domain 2    score: 75.2 bits;  conditional E-value: 1.4e-24
    TIGR00737  56 leiaedekpisvQlagsdpdvmaeaAkiaeelgadiiDlNmGCPvkkitkkgaGsallkepeliekivkavveave...vPVTvKiRiGwdeehinveeaariaedaGaqavalHgRTraqlyeGeanwdiiarvkqavk.....iPVignGDitspedAkamLeetgadgvligRga 225
                  ++ ++++ +   Q+ +++p+++ +aAk +++     iD+NmGCP k  +  g Gsallk+p+++++i+ ++         P   KiR+     ++ ++++   + +aGa ava+H+R         a+w ++++v   v+     i  + nGD ++ ++  + +e+t +dgvl++R  
  MMETSP1061-20121228|43329_1 136 IDPKAEKDKLICQIGTGEPELALDAAKKVVGDV-AAIDVNMGCPKKFSVSGGMGSALLKDPDRAARILCTLKGLLGplgKPLSCKIRLLA--TTQETVDFIEKMIRAGADAVAIHARRVGDESTKAADWKSLQEVLGIVQpkhpdINFLVNGDFYDRKERAEFVERTKVDGVLLARPG 310
                  445567778889***************777655.479*********99*******************876544444444********854..344556677777789*****************************999999999999***************************965 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 0.94
    TIGR00737  31 eaglvvsEmvsse 43 
                  ++  vv+Em+s++
  MMETSP1061-20121228|43329_1 347 NSKYVVCEMMSHR 359
                  467899***9986 PP

>> TIGR00742  yjbN: tRNA dihydrouridine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.3   0.0   1.4e-10   1.2e-07      53     165 ..     141     251 ..     127     358 .. 0.80

  Alignments for each domain:
  == domain 1    score: 29.3 bits;  conditional E-value: 1.4e-10
    TIGR00742  53 eekPvalqlggsdpedlakcaklaeefgydeinlnvGcPsdrvqngnfGaclmanadlvadivkamkea...veiPvtvktriGideldsyeelvdfveivsdkGikefivharka 165
                  e + +  q+g+ +pe ++++ak +   +   i++n+GcP +   +g +G+ l+ ++d  a i+ ++k       +P++ k r+        +e vdf+e++  +G +   +har+ 
  MMETSP1061-20121228|43329_1 141 EKDKLICQIGTGEPELALDAAKKVV-GDVAAIDVNMGCPKKFSVSGGMGSALLKDPDRAARILCTLKGLlgpLGKPLSCKIRLLATT----QETVDFIEKMIRAGADAVAIHARRV 251
                  4556778********9999887443.3467899********999*******************999976222579999998886555....56799******************85 PP

>> TIGR00736  nifR3_rel_arch: putative TIM-barrel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.9   0.0   5.7e-08   4.6e-05      70     182 ..     145     264 ..     123     276 .. 0.82

  Alignments for each domain:
  == domain 1    score: 20.9 bits;  conditional E-value: 5.7e-08
    TIGR00736  70 vavnvrisaleeeldvelsvaesadiieinahCrqPeiteiGiGqellknkelLkefvakvk....karkpvfvkirgnvikldevkvarklvdagvdaihvdalkPGedr...adlelv 182
                  +  ++   + e +ld +  v+  +  i++n  C +   ++ G+G  llk++++   ++  +k     + kp++ kir+ ++  ++v    k+++ag da+ + a   G++    ad +++
  MMETSP1061-20121228|43329_1 145 LICQIGTGEPELALDAAKKVVGDVAAIDVNMGCPKKFSVSGGMGSALLKDPDRAARILCTLKgllgPLGKPLSCKIRLLATTQETVDFIEKMIRAGADAVAIHARRVGDEStkaADWKSL 264
                  5555555566777888999999999*********************************9998433346799********************************99999875111444444 PP

>> TIGR01949  AroFGH_arch: predicted phospho-2-dehydro-3-deoxyheptonate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   5.4e-05     0.045      87     116 ..     226     256 ..     216     273 .. 0.76
   2 ?   -4.1   0.0       2.6   2.1e+03     135     149 ..     366     380 ..     340     384 .. 0.77

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 5.4e-05
    TIGR01949  87 dkrivttvedairlGadavsihv.nvGsdee 116
                   +  v  +e+ ir+Gadav+ih   vG++  
  MMETSP1061-20121228|43329_1 226 TQETVDFIEKMIRAGADAVAIHArRVGDEST 256
                  56678889**************835888754 PP

  == domain 2    score: -4.1 bits;  conditional E-value: 2.6
    TIGR01949 135 vPllammyarGkrid 149
                  vP l m +++G+++ 
  MMETSP1061-20121228|43329_1 366 VPYLPMKFPQGQTVG 380
                  899999999999875 PP

>> TIGR03849  arch_ComA: phosphosulfolactate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   4.6e-05     0.038     131     162 ..     224     255 ..     207     269 .. 0.81

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 4.6e-05
    TIGR03849 131 letedrielinkdleaGadyviiegresGksi 162
                   +t++ ++ i+k ++aGad v i +r  G + 
  MMETSP1061-20121228|43329_1 224 ATTQETVDFIEKMIRAGADAVAIHARRVGDES 255
                  47899*********************999764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.25
# Mc/sec: 2682.02
//
Query:       MMETSP1061-20121228|43342_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0062   13.7   0.0     0.0073   13.5   0.0    1.1  1  TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III
     0.0097   13.9   0.0      0.011   13.7   0.0    1.3  1  TIGR03872 cytochrome_MoxG: cytochrome c(L), periplasmic
  ------ inclusion threshold ------
       0.04   11.8   0.0      0.052   11.4   0.0    1.3  1  TIGR02603 CxxCH_TIGR02603: putative heme-binding domain


Domain annotation for each model (and alignments):
>> TIGR00782  ccoP: cytochrome c oxidase, cbb3-type, subunit III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   5.3e-06    0.0073      98     127 ..      38      67 ..      21      77 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 5.3e-06
    TIGR00782  98 kdPelvslarnagaaiFrtyCaqChGagae 127
                  +d e  +la + g+++++++Ca+ChG +a 
  MMETSP1061-20121228|43342_1  38 ADYENRDLAVSIGTSAYTQNCARCHGLDAI 67 
                  677788899999**************9984 PP

>> TIGR03872  cytochrome_MoxG: cytochrome c(L), periplasmic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0     8e-06     0.011      34      71 ..      33      75 ..       5      96 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 8e-06
    TIGR03872 34 knpynedke....alkkgeslfltacsGchGhea.egklGPgl 71
                 +npyn d e    a+  g s +++ c+ chG  a  g + P l
  MMETSP1061-20121228|43342_1 33 ENPYNADYEnrdlAVSIGTSAYTQNCARCHGLDAiSGGIAPDL 75
                 56666554422227999**************765267777765 PP

>> TIGR02603  CxxCH_TIGR02603: putative heme-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   3.8e-05     0.052       5      34 ..      49      78 ..      46     102 .. 0.88

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 3.8e-05
    TIGR02603  5 kGkavfakaCvvCHrvggeGvdvGPdLtgv 34
                  G  +++++C+ CH +++    + PdL  +
  MMETSP1061-20121228|43342_1 49 IGTSAYTQNCARCHGLDAISGGIAPDLRYL 78
                 58899*********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 602.56
//
Query:       MMETSP1061-20121228|43336_1  [L=668]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-39  132.1   0.0    6.1e-25   85.8   0.0    2.8  2  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.6   0.0     2e-15   8.1e-12       1     113 [.      16     133 ..      16     138 .. 0.82
   2 !   85.8   0.0   1.5e-28   6.1e-25     177     435 ..     185     470 ..     171     484 .. 0.70

  Alignments for each domain:
  == domain 1    score: 42.6 bits;  conditional E-value: 2e-15
    TIGR03417   1 trpnililmvdqlagtl.lpaygpaevlkaPnlkrlaarsvvfdnaytasPlcaParasllsGklPsrigvydnaa.....efasdiptyahylraaGy.ktalsGkmhfvGpdqlhGfe 113
                  +rpn+l++++dq  +    p+    +  + P+++rl +++  f+  yt++ +c+P+r +ll+ ++P ++gv    +      +++dip  a  +++aGy k    Gk h   +   +Gfe
  MMETSP1061-20121228|43336_1  16 KRPNVLVIITDQERAIQhWPE--SFSKDHLPSMERLKKNGLDFRHHYTNTCMCSPSRSTLLTSRFPIKTGVTRTGSpapprALPTDIPNVATVMKQAGYpKVEWHGKWHVGKTPADYGFE 133
                  58**********887651454..557899**************************************99998765422333699***************445689999976665566665 PP

  == domain 2    score: 85.8 bits;  conditional E-value: 1.5e-28
    TIGR03417 177 arekdarPfcltvslthPhdPyvirkkywdlyedeeillPevale...leeqdphskrllkaldlkekditeeqirrarrayfaai.syvddkiGellevleetrladdtivvfvsdhGdmlGerGlwykm.sffegsarvPllvaaperl.eagrveaavstvdllPtlvelagveleevlp......aldGeslvpllkgkerkdevlg........eyl...aegsiaPlvalrrGkykfvkc.e...adPe.qlydleadPkelenlaeepehaetlealrae 435
                  a++++  Pfc+++s++ Phd yv+++     y +++ ++ ev l+   +e+ d +  + ++ ++++   ++ e+ ++    ++a + + vd++iGell+ +++ ++++ t+++ ++dhG+    + l  k  + +++s r+P++v+ p ++ e++ ++a  s++d+lPtl+ l   +++e  +      +ld  ++++ + gk+++ + +          y      g+ + + ++ +G+ k+ +  +    d +  lydl++dP e +nla +pe+++  +++++e
  MMETSP1061-20121228|43336_1 185 AQKEEPEPFCIVASFVNPHDVYVAQHGPAMGYTKDDFNKLEVPLPpnlMEDPDKNN-KPRSQAQMSLRYVPFESSHQEYINFYAHLhTVVDAQIGELLDQVDQLGFTESTLILRTADHGEQGLSHSLVEKFyNCYQESLRIPFIVSNPIAFpEPQSTDALSSHLDILPTLAGLLCSNQTESFQgkdltqVLDNPQITTAAVGKNGNGDTIIgiqpkihfTYDdipCPGAPSVIRCVHKGTVKYAVYfTpdgRDADwELYDLTTDPLENTNLAGNPEYEQLQRDMEKE 470
                  5577889*****************99877777777666655533211133333333.333344444445555555666667787762679*****************************998888888886368999***********99945788888899********99987766655431111115666666666677766654433122222112322114566667889*******975413111343347*******************99988777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (668 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.35u 0.14s 00:00:00.49 Elapsed: 00:00:00.35
# Mc/sec: 2519.11
//
Query:       MMETSP1061-20121228|43345_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 437.65
//
Query:       MMETSP1061-20121228|43347_1  [L=627]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (627 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.16s 00:00:00.50 Elapsed: 00:00:00.28
# Mc/sec: 2853.70
//
Query:       MMETSP1061-20121228|43358_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1963.34
//
Query:       MMETSP1061-20121228|43366_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|43373_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 611.95
//
Query:       MMETSP1061-20121228|43377_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|43399_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.26
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|43394_1  [L=548]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (548 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2583.22
//
Query:       MMETSP1061-20121228|43405_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   14.5   0.0     0.0016   14.4   0.0    1.0  1  TIGR02104 pulA_typeI: pullulanase, type I
     0.0075   12.4   0.0     0.0075   12.4   0.0    1.0  1  TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase
  ------ inclusion threshold ------
       0.03   11.4   0.0       0.03   11.4   0.0    1.0  1  TIGR01231 lacC: tagatose-6-phosphate kinase


Domain annotation for each model (and alignments):
>> TIGR02104  pulA_typeI: pullulanase, type I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.2e-06    0.0016     231     261 ..       2      32 ..       1      36 [. 0.90

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.2e-06
    TIGR02104 231 lKqlvkalheaglrvilDvvynHvysveesa 261
                  ++++v+ ++e+g+ v+lD  y+H +++ +s+
  MMETSP1061-20121228|43405_1   2 VREIVDLCREHGVWVVLDCTYEHFFNTGKSE 32 
                  6789**********************97774 PP

>> TIGR02402  trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.4   0.0   5.5e-06    0.0075     164     190 ..       3      29 ..       1      41 [. 0.89

  Alignments for each domain:
  == domain 1    score: 12.4 bits;  conditional E-value: 5.5e-06
    TIGR02402 164 kalvdaaHklglaVllDvVyNHlGPeG 190
                  +++vd + ++g+ V+lD  y H+   G
  MMETSP1061-20121228|43405_1   3 REIVDLCREHGVWVVLDCTYEHFFNTG 29 
                  689*******************97666 PP

>> TIGR01231  lacC: tagatose-6-phosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   2.2e-05      0.03     148     169 ..       4      25 ..       2      44 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 2.2e-05
    TIGR01231 148 klielakdkgvavvldcsgaal 169
                  ++++l++++gv vvldc+ + +
  MMETSP1061-20121228|43405_1   4 EIVDLCREHGVWVVLDCTYEHF 25 
                  699**************97655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        23  (0.00560702); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 249.31
//
Query:       MMETSP1061-20121228|43408_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 292.67
//
Query:       MMETSP1061-20121228|43412_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 465.10
//
Query:       MMETSP1061-20121228|43403_1  [L=808]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (808 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.30
# Mc/sec: 3554.91
//
Query:       MMETSP1061-20121228|43424_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 389.02
//
Query:       MMETSP1061-20121228|43433_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 635.95
//
Query:       MMETSP1061-20121228|43437_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      118  (0.0287665); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 2171.43
//
Query:       MMETSP1061-20121228|43468_1  [L=142]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (142 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 814.89
//
Query:       MMETSP1061-20121228|43475_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 402.91
//
Query:       MMETSP1061-20121228|43491_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        18  (0.0043881); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 258.48
//
Query:       MMETSP1061-20121228|43505_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 309.67
//
Query:       MMETSP1061-20121228|43524_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.17s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1823.40
//
Query:       MMETSP1061-20121228|43531_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.56
# Mc/sec: 949.85
//
Query:       MMETSP1061-20121228|43569_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.39
# Mc/sec: 311.36
//
Query:       MMETSP1061-20121228|43573_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-07   27.2   0.0    0.00027   18.8   0.0    3.2  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.4   0.0    0.0024       9.9       2      24 ..       3      26 ..       2      30 .. 0.87
   2 !   18.8   0.0   6.7e-08   0.00027       1      34 [.      41      74 ..      41      75 .. 0.93
   3 ?   -1.0   0.0      0.13   5.3e+02       5      21 ..      84     100 ..      81     101 .. 0.84

  Alignments for each domain:
  == domain 1    score: 4.4 bits;  conditional E-value: 0.0024
    TIGR00756  2 tyntlisglckagrveeAlelf.d 24
                 t n+l+  l+k+++  eAl+++ +
  MMETSP1061-20121228|43573_1  3 TANALLTVLAKSRKGIEALDILeN 26
                 569*****************9944 PP

  == domain 2    score: 18.8 bits;  conditional E-value: 6.7e-08
    TIGR00756  1 vtyntlisglckagrveeAlelfdeMkergivPd 34
                 vty+ +is+l+++++++eA +++d++  r+++++
  MMETSP1061-20121228|43573_1 41 VTYTLIISALVRSNMLKEASDILDDLDNRNHYCS 74
                 7*************************99998876 PP

  == domain 3    score: -1.0 bits;  conditional E-value: 0.13
    TIGR00756   5 tlisglckagrveeAle 21 
                  +++s+++++ +++ +++
  MMETSP1061-20121228|43573_1  84 MVLSAYSQRADWSGVER 100
                  799*****999988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1786.57
//
Query:       MMETSP1061-20121228|43587_1  [L=243]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (243 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       149  (0.0363237); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1282.93
//
Query:       MMETSP1061-20121228|43603_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|43602_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.11s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1104.54
//
Query:       MMETSP1061-20121228|43596_1  [L=368]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (368 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1619.07
//
Query:       MMETSP1061-20121228|43613_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|43611_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       215  (0.0524135); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.15s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2550.22
//
Query:       MMETSP1061-20121228|43637_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       205  (0.0499756); expected 82.0 (0.02)
Passed bias filter:                      160  (0.0390054); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 376.41
//
Query:       MMETSP1061-20121228|43638_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.4   0.1       0.45    8.0   0.0    2.2  2  TIGR03784 marine_sortase: sortase, marine proteobacterial type


Domain annotation for each model (and alignments):
>> TIGR03784  marine_sortase: sortase, marine proteobacterial type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0    0.0059        24      15      35 ..     118     138 ..     113     174 .. 0.85
   2 ?    8.0   0.0   0.00011      0.45     119     154 ..     188     223 .]     172     223 .] 0.90

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.0059
    TIGR03784  15 lqaKaelaqvlieqawaqtla 35 
                  lq K  ++  l+e aw+++l+
  MMETSP1061-20121228|43638_1 118 LQSKLDISPELLELAWEEALE 138
                  6889999***********994 PP

  == domain 2    score: 8.0 bits;  conditional E-value: 0.00011
    TIGR03784 119 tkegklqeykvtatevvdesetellasaddsqLvLi 154
                  +++g+ +++kv+a +vv++ ++++ +s+ ds L L+
  MMETSP1061-20121228|43638_1 188 KEQGRVTSFKVKARKVVETAKKAFCNSHVDSDLCLV 223
                  5789999************************99996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 1051.20
//
Query:       MMETSP1061-20121228|43646_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.2    9.3   6.0       0.21    9.3   4.2    1.1  1  TIGR04032 toxin_SdpC: antimicrobial peptide, SdpC family


Domain annotation for each model (and alignments):
>> TIGR04032  toxin_SdpC: antimicrobial peptide, SdpC family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.2     5e-05      0.21     112     143 ..      34      66 ..      13      72 .. 0.71

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 5e-05
    TIGR04032 112 nlvavvavaavlavvvvaaVAvatv.alaavav 143
                  +++a+ a++a++av+v+ aVAva+  a +avav
  MMETSP1061-20121228|43646_1  34 AVFAEFAAFATVAVAVAFAVAVAFAfAFVAVAV 66 
                  466777777777777777777776403344443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       337  (0.082155); expected 82.0 (0.02)
Passed bias filter:                      196  (0.0477816); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.18s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|43655_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|43674_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 315.63
//
Query:       MMETSP1061-20121228|43675_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|43689_1  [L=539]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (539 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 2294.91
//
Query:       MMETSP1061-20121228|43699_1  [L=154]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (154 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 967.92
//
Query:       MMETSP1061-20121228|43693_1  [L=850]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (850 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.32
# Mc/sec: 3505.96
//
Query:       MMETSP1061-20121228|43720_1  [L=228]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (228 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       164  (0.0399805); expected 82.0 (0.02)
Passed bias filter:                      124  (0.0302292); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.24
# Mc/sec: 1253.90
//
Query:       MMETSP1061-20121228|43736_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 652.61
//
Query:       MMETSP1061-20121228|43756_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   14.8   0.0     0.0018   14.7   0.0    1.0  1  TIGR00604 rad3: DNA repair helicase (rad3)


Domain annotation for each model (and alignments):
>> TIGR00604  rad3: DNA repair helicase (rad3)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.4e-07    0.0018     467     515 ..       8      56 ..       2      58 .] 0.90

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.4e-07
    TIGR00604 467 vlekslehvlkrenlltlivtrgsdqvalestfekrkdpslvrnlaell 515
                  + + ++ h++ ++++ + ++ rg  ++ l s++e+r++++++ +l+++l
  MMETSP1061-20121228|43756_1   8 PNRLENPHIISPHQIHVRVMGRGVSNKLLTSSYERRQNNDYYIELGNTL 56 
                  5666778***************************************998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|43753_1  [L=284]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (284 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1703.86
//
Query:       MMETSP1061-20121228|43775_1  [L=155]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (155 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 929.92
//
Query:       MMETSP1061-20121228|43787_1  [L=313]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (313 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.26
# Mc/sec: 1588.95
//
Query:       MMETSP1061-20121228|43791_1  [L=810]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (810 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.12s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 3340.97
//
Query:       MMETSP1061-20121228|43812_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.28
# Mc/sec: 254.55
//
Query:       MMETSP1061-20121228|43815_1  [L=476]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.7e-35  118.9   1.2    9.1e-35  117.9   0.8    1.4  1  TIGR02475 CobW: cobalamin biosynthesis protein CobW
    3.2e-13   47.5   2.4    7.2e-10   36.5   0.2    2.2  2  TIGR00073 hypB: hydrogenase accessory protein HypB
    1.9e-05   21.8   0.1    3.2e-05   21.1   0.1    1.3  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
      0.001   16.7   0.0      0.002   15.8   0.0    1.4  1  TIGR00101 ureG: urease accessory protein UreG
     0.0014   16.5   0.1     0.0039   15.1   0.0    1.8  1  TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
      0.002   15.8   0.0     0.0064   14.2   0.0    1.8  1  TIGR00150 HI0065_YjeE: ATPase, YjeE family
     0.0042   14.7   0.5       0.91    7.1   0.0    2.6  2  TIGR00231 small_GTP: small GTP-binding protein domain


Domain annotation for each model (and alignments):
>> TIGR02475  CobW: cobalamin biosynthesis protein CobW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.9   0.8   1.6e-37   9.1e-35       2     224 ..      72     309 ..      71     322 .. 0.78

  Alignments for each domain:
  == domain 1    score: 117.9 bits;  conditional E-value: 1.6e-37
    TIGR02475   2 akipvtvvtGflGaGkttlirhllena.eGkriavivnefGdlGidGeilkacgieacseeeivelanGcicctvaddflptlekllar.eeeldhilietsGlalpkplvqafqw.pe...........irsrvtvdgvvavvdsaavaaGrfa..edldaleaqraad...enldhespleelfedqlacadlvilnkadlldaagle...kvraeiaeelpravkiveaeeGevdaevllGl 224
                  ++ipvt+++GflG+Gkttl++h+l+ + +G +iavivn++ +l idG+ ++        ++e+v l nGcicct+  d++  ++++ +   ++ d +lie++G+a p+ + ++f   p+           + +++ +d+ v+vvd+++ + G ++  +  ++l +    +   e+ + ++ +++l+ dq+  a+++ilnk dl++ +++e   k + ++ e l+ + ++++a+ G++d++ +l  
  MMETSP1061-20121228|43815_1  72 HRIPVTILSGFLGSGKTTLLQHILKSPhHGLKIAVIVNDMAELNIDGQTIARV------QKEVVTLQNGCICCTLRGDLIREIQRIRENtANDFDYVLIESTGIAEPQQVAESFCVdPNtltlagndatmLWNSARLDTCVTVVDASSFS-GYLStlKRFEDLFEDGLDEsskETGEGQKSISQLMIDQVEFANVIILNKVDLVSEQEQEqklKLNMKLIETLNPKARVITASYGAIDPTTILNT 309
                  69**********************98736*******************99988......567************************97625789**************99999954233111111111114567789*********9986.444412345666554433300044456699**********************97655441114567888999****************999865 PP

>> TIGR00073  hypB: hydrogenase accessory protein HypB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.5   0.2   1.2e-12   7.2e-10      26     120 ..      70     168 ..      53     170 .. 0.84
   2 !   10.7   0.1   9.7e-05     0.057     156     197 ..     255     298 ..     239     311 .. 0.80

  Alignments for each domain:
  == domain 1    score: 36.5 bits;  conditional E-value: 1.2e-12
    TIGR00073  26 ekkgllvlnllssiGsGktlllekliealkkevkiavieGDlit.kaDaeRlrkagvkaiqintGke.ChLdaklva..dalkdlelddkdlllienvG 120
                  +k+ + v  l +  GsGkt+ll++++++ ++ +kiavi+ D++  + D + + +   ++++++ G   C L  +l+   +++++++++d d +lie  G
  MMETSP1061-20121228|43815_1  70 DKHRIPVTILSGFLGSGKTTLLQHILKSPHHGLKIAVIVNDMAElNIDGQTIARVQKEVVTLQNGCIcCTLRGDLIReiQRIRENTANDFDYVLIESTG 168
                  44444444455668***************************986488*****************987268******9888999*************987 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 9.7e-05
    TIGR00073 156 keadlilinkvdlveavda..dvekvkadvkkinPeveiilvsa 197
                  + a++i++nkvdlv   +   +++  ++ + ++nP++++i+ s 
  MMETSP1061-20121228|43815_1 255 EFANVIILNKVDLVSEQEQeqKLKLNMKLIETLNPKARVITASY 298
                  679***********8876511455566677889*******9875 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   5.5e-08   3.2e-05     181     253 ..      77     152 ..      52     155 .. 0.78

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 5.5e-08
    TIGR03819 181 llvsGgtGsGkttLLsalLalvaedeRi.vlvedaaelrpdhphvvkleaReanv.eGaGavslt.dLvrqaLRmR 253
                   ++sG  GsGkttLL  +L + ++  +i v+v+d ael++d + + ++++    + +G    +l+ dL+r+  R+R
  MMETSP1061-20121228|43815_1  77 TILSGFLGSGKTTLLQHILKSPHHGLKIaVIVNDMAELNIDGQTIARVQKEVVTLqNGCICCTLRgDLIREIQRIR 152
                  467999*************9999988876899*********99999998776554145556666557788777777 PP

>> TIGR00101  ureG: urease accessory protein UreG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   3.4e-06     0.002       6     101 ..      79     168 ..      73     191 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 3.4e-06
    TIGR00101   6 vagpvgsgktaliealtrelakkydlavitndiyt.kedaeflvknsvlpperilgvetggcphtairedaslnleaveelearfpdlelvliesgg 101
                  ++g +gsgkt+l++ + ++ ++  ++avi nd+   + d + +++     ++ ++ +   gc   ++r d   +++ + e +a   d++ vlies g
  MMETSP1061-20121228|43815_1  79 LSGFLGSGKTTLLQHILKSPHHGLKIAVIVNDMAElNIDGQTIARV----QKEVVTL-QNGCICCTLRGDLIREIQRIRENTA--NDFDYVLIESTG 168
                  47999***************************96414466665553....3345555.4679999999999999999998766..688999999988 PP

>> TIGR00176  mobB: molybdopterin-guanine dinucleotide biosynthesis protein B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   6.6e-06    0.0039       4      96 ..      79     165 ..      76     168 .. 0.72

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 6.6e-06
    TIGR00176   4 ivgykdsGKTtlieklvkelkargyrVatiKHdaheidldkegkDsarhreaGAeevivasserlavmtetqeeldLekllkrlad.lDivLvE 96 
                  ++g+ +sGKTtl+++++k   ++g+++a+i  d  e+++d  g+  ar+++   e+v+++++  +++++     ++++ + ++ a+ +D+vL+E
  MMETSP1061-20121228|43815_1  79 LSGFLGSGKTTLLQHILKS-PHHGLKIAVIVNDMAELNID--GQTIARVQK---EVVTLQNGCICCTLRG-DLIREIQRIRENTANdFDYVLIE 165
                  57999**********9985.789*********99999999..777777776...4555555554444433.34556666665555457777777 PP

>> TIGR00150  HI0065_YjeE: ATPase, YjeE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.0   1.1e-05    0.0064      22      45 ..      74      97 ..      51     108 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 1.1e-05
    TIGR00150 22 atvvlLkGdlGaGKttlvkgllkg 45
                   v +L+G lG+GKttl++ +lk 
  MMETSP1061-20121228|43815_1 74 IPVTILSGFLGSGKTTLLQHILKS 97
                 45889**************99874 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0016      0.91      10      50 ..      81     118 ..      72     131 .. 0.70
   2 !    5.2   0.1     0.006       3.5     112     141 ..     255     283 ..     235     300 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0016
    TIGR00231  10 GhvdvGKstLlnsllknkisiteskpgvtrdyvteqieedG 50 
                  G+ ++GK+tLl+ +lk     +  k  v  ++++e   +dG
  MMETSP1061-20121228|43815_1  81 GFLGSGKTTLLQHILKSP--HHGLKIAVIVNDMAE-LNIDG 118
                  8899***********987..344444555555554.56666 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.006
    TIGR00231 112 gvpiilvvnKiDlkddlktkvkslfaklna 141
                  ++  ++ +nK+Dl++  ++++++l+ +++ 
  MMETSP1061-20121228|43815_1 255 EFANVIILNKVDLVS-EQEQEQKLKLNMKL 283
                  4677899********.66666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (476 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                      159  (0.0387616); expected 82.0 (0.02)
Passed Vit filter:                        33  (0.00804486); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.31u 0.18s 00:00:00.49 Elapsed: 00:00:00.39
# Mc/sec: 1610.94
//
Query:       MMETSP1061-20121228|43821_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|43828_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 380.74
//
Query:       MMETSP1061-20121228|43842_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|43866_1  [L=253]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (253 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1151.49
//
Query:       MMETSP1061-20121228|43863_1  [L=517]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (517 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 2624.55
//
Query:       MMETSP1061-20121228|43875_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.26
# Mc/sec: 1132.06
//
Query:       MMETSP1061-20121228|43884_1  [L=119]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (119 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 785.34
//
Query:       MMETSP1061-20121228|43886_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       283  (0.0689907); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 521.36
//
Query:       MMETSP1061-20121228|43894_1  [L=180]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (180 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1250.42
//
Query:       MMETSP1061-20121228|43907_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1480.57
//
Query:       MMETSP1061-20121228|43906_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       155  (0.0377864); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.13s 00:00:00.40 Elapsed: 00:00:00.25
# Mc/sec: 2539.47
//
Query:       MMETSP1061-20121228|43918_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.021   12.3   0.1      0.026   12.0   0.0    1.1  1  TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit


Domain annotation for each model (and alignments):
>> TIGR01938  nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   6.3e-06     0.026      11      94 ..       7      94 ..       2     137 .. 0.67

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 6.3e-06
    TIGR01938 11 ilvlslvasvllatvavvLkpiqeeaallDkqkqilavagllds......ekakekevkelyaerierrlldlktGelvkkaeeknldae 94
                  +++ l as+++ +v    +  +++++   +++ i +++    +      +++k +e  ++++e +++rl+d+++G+l+    ++nl+a+
  MMETSP1061-20121228|43918_1  7 LCAVNLAASIMVNGVCCYYQMSEQNERREQQNEAIKKSIRTELKlhrrrkIIDKRNELIQAHKEAVTSRLIDERRGKLMTL--KANLKAR 94
                 5678999*****999766665555555555555554444432223334546677999*********************973..3555543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       242  (0.0589956); expected 82.0 (0.02)
Passed bias filter:                      169  (0.0411994); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.17s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1199.90
//
Query:       MMETSP1061-20121228|43921_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   23.2   0.0    1.2e-05   23.0   0.0    1.1  1  TIGR00730 TIGR00730: TIGR00730 family protein


Domain annotation for each model (and alignments):
>> TIGR00730  TIGR00730: TIGR00730 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   2.8e-09   1.2e-05     128     177 ..       5      54 ..       1      55 [. 0.94

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 2.8e-09
    TIGR00730 128 piilfniegffdklleflksliqegfisakdlelikvvdtvkevvekvek 177
                  pi+ +n++g++++++e+l+   +++ i  +  ++i  +dt +++v+ ve+
  MMETSP1061-20121228|43921_1   5 PIVCVNVDGYYEPFREMLHRAYEDKLIRMEPEQIIWFADTAEDAVRFVEN 54 
                  9*******************************************998875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 541.85
//
Query:       MMETSP1061-20121228|43922_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 483.96
//
Query:       MMETSP1061-20121228|43913_1  [L=312]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (312 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       207  (0.0504632); expected 82.0 (0.02)
Passed bias filter:                      136  (0.0331546); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.16s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1470.74
//
Query:       MMETSP1061-20121228|43935_1  [L=39]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (39 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 257.38
//
Query:       MMETSP1061-20121228|43929_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   3.4e-102  340.1  28.4     4e-102  339.9  19.7    1.0  1  TIGR00886 2A0108: nitrite transporter
    7.8e-16   55.8  22.9    1.1e-15   55.3  15.9    1.1  1  TIGR00893 2A0114: D-galactonate transporter
    4.9e-09   33.4   1.4    4.9e-09   33.4   0.9    2.8  3  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    9.9e-09   32.5   8.9    9.9e-09   32.5   6.1    2.2  3  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    1.4e-07   28.7  20.2    6.3e-07   26.6  14.0    2.0  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    3.5e-05   21.8   7.5    3.5e-05   21.8   5.2    3.0  4  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00886  2A0108: nitrite transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  339.9  19.7  5.8e-105    4e-102       1     368 []      46     408 ..      46     408 .. 0.93

  Alignments for each domain:
  == domain 1    score: 339.9 bits;  conditional E-value: 5.8e-105
    TIGR00886   1 raLflswlafflsFlvWfalspLvvqiikedlgLskaqlallvavpvlatavlRiilgflvdkfGpRkttallllllaiPllllalavssfsellllrlliGiaGasFvislamisefFpkkevGtAlglaaGlGNlGggvaqlvmpaiieallkga.gqpakkawrvalvlvpalillliallvfvvvadtppgksaeaklsvksallslekealaevlkvlkeketwilallYivtFGselgvssilaallkdqfglskveagayasllallgllaRplGGllsDklgg.....arkllvlfllvamgaalvvlglvkesseslavavvlfvvlflfvglgnGstFalvpvvfrratgavsGlvgaiGnlGg 368
                  ra+++sw +ff++F++Wfa++pL++  i++dlgL+k+q++++++v+v++t+++R+ilg+++dkfG R+ ++++l++++iP++l++l++ + ++l++lrl+iG aG++Fv+++++ s++F k++vGtA++l +G+GNlGggv+qlvm ++   l+k+    +a kawr+   +vpa++++ +a+ ++ + +d+p+g+ +e k + +  ++     a+a++ + + + +twil+++Y+++FG+el+++++ a ++kd+f ls+  a+a+as++++++l+aR lGG++sD  ++     +r+++ +f+l++ +++++v++ +    ++l  a++++v+++lfv++++G t+ +vp+v++ atg +sG+vga+Gn+G+
  MMETSP1061-20121228|43929_1  46 RAFHCSWWGFFIAFFIWFAIAPLLS-EIRDDLGLTKQQIWTSSIVGVAGTILMRFILGPACDKFGARIPMVAVLCFASIPTALTGLVN-TSTGLAILRLFIGAAGGTFVMCQYWSSRMFCKEVVGTANALCGGWGNLGGGVTQLVMGSLLFPLFKNFfDGDASKAWRYVS-IVPAVVAFGTAVTIYYISDDAPKGNYSELKKHGV--MAD--ISAAASFRQGAFNFNTWILFIQYACSFGVELTMNNAAALYFKDKFLLSTESAAAIASIFGFMNLFARGLGGFMSDHGNKylgmrGRIAAQTFCLLIEAVLVLVFAQT----DKLRDAIIVMVFFSLFVQAAEGTTYGIVPYVDPPATGSISGIVGAGGNTGA 408
                  89***********************.668***********************************************************.**********************************************************55555555555558899*****9.*************************666655544..222..22333455666779**************************************************************999999*********************9886....47***********************************************97 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.3  15.9   1.6e-18   1.1e-15      18     391 ..      70     439 ..      55     444 .. 0.82

  Alignments for each domain:
  == domain 1    score: 55.3 bits;  conditional E-value: 1.6e-18
    TIGR00893  18 vtlkedLglsaaqyglvfsafsigyvlfqlpggllldriGakktlavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefs...........WqlvFiieGvlaiilgvlilkvikdkpekakvlkeeeksivvggllaeqagkknseakkaqikelLkdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlva.skiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattGsfagallvvaalalig 391
                  +++++dLgl+++q+ ++  +  +g +l+ +  g ++d++Ga++ +  ++ + ++ t+l++++ + ++l++lR  +G+a + ++ +    ++  F ++  +ta+++      lg+ + + ++g++l  +            W+ v i+ +v+a+  +v i+ +  d+p+    +  e k+  v +   +        ++ a++++   + ++++l++ ++++  +  +++  + ly k+++ ls+++a+ +as+ + + + +  lgg++sd   +k   +  ++++   ++l+ ++l+ +++ ++    a++++v  + f +++   +  +++ ++++ + g+  G++ + Gn++++++ + +  +++ t    +++ +++ ++l +
  MMETSP1061-20121228|43929_1  70 SEIRDDLGLTKQQIWTSSIVGVAGTILMRFILGPACDKFGARIPMVAVLCFASIPTALTGLVNTSTGLAILRLFIGAAGGTFVMCQY-WSSRMFCKEVVGTANALCGGWGNLGGGVTQLVMGSLLFPLFknffdgdaskaWRYVSIVPAVVAFGTAVTIYYISDDAPK---GNYSELKKHGVMA---D-------ISAAASFRQGAFNFNTWILFIQYACSFGVELTMNNAAALYFKDKFLLSTESAAAIASIFGFMNLFARGLGGFMSDHG-NKYLGMRGRIAAQTFCLLIEAVLVLVFAQTDkLRDAIIVMVFFSLFVQAAEGTTYGIVP-YVDPPATGSISGIVGAGGNTGAVCFGLGFRNLDDKTAFRIMGFSILGSAVLSV 439
                  569**********9777777788999****************************************************999998865.5667788888888888876655555555555555555544445559**************************99999999...5555555554444...2.......23568999*******************************************************************75.55578888888888888888888888775553455566666666666666777888777.67888899999************************995555666666655544 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.4   0.9   7.1e-12   4.9e-09     229     398 .]      25     193 ..      11     193 .. 0.88
   2 !    4.3   3.5    0.0048       3.3     291     371 ..     314     393 ..     230     409 .. 0.61
   3 ?    0.6   0.1     0.068        46     287     333 ..     397     443 ..     388     450 .. 0.81

  Alignments for each domain:
  == domain 1    score: 33.4 bits;  conditional E-value: 7.1e-12
    TIGR00895 229 ekseekkkrsvvkllfkgklakatllLwllyflllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vlalllllaavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlgaiigpilagvll 398
                  +  + +k++ ++   f+    +a  + w ++f+  ++ ++++  l  +  ++g   ++  +  ++  +G +l  ++lg + d++g +  ++++l +a++   l +  ++ +t+l++l +++G+ + g  ++    +++++ +++ +t+ +   g G lg+ +  +++g+ll
  MMETSP1061-20121228|43929_1  25 DPDQDDKAKTIKLCSFARPHMRAFHCSWWGFFIAFFIWFAIAPLLSEIRDDLGLTKQQIWTSSIVGVAGTILMRFILGPACDKFGARiPMVAVLCFASIPTALTGL-VNTSTGLAILRLFIGA-AGGTFVMCQYWSSRMFCKEVVGTANALCGGWGNLGGGVTQLVMGSLL 193
                  555666778888888888889999999************************************************************6777777777777777776.9999***********6.578888999999********************************997 PP

  == domain 2    score: 4.3 bits;  conditional E-value: 0.0048
    TIGR00895 291 lvllnvGgvlgslllgaladrlgpkvlalllllaavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYptai 371
                  l++  +Gg ++     +l  r ++ + ++ ll+ av++ + ++ + +   +++++v++ lfv++a +  +++ + + p+a+
  MMETSP1061-20121228|43929_1 314 LFARGLGGFMSDHGNKYLGMRGRIAAQTFCLLIEAVLVLVFAQ-TDKLRDAIIVMVFFSLFVQAAEGTTYGIVPYVDPPAT 393
                  2222344555555555555555666667777777777766666.777778888889999************9998877764 PP

  == domain 3    score: 0.6 bits;  conditional E-value: 0.068
    TIGR00895 287 aalllvllnvGgvlgslllgaladrlgpkvlalllllaavfavlvvs 333
                  + ++++  n+G+v+  l +  l d+   +++ + +l +av++v ++ 
  MMETSP1061-20121228|43929_1 397 SGIVGAGGNTGAVCFGLGFRNLDDKTAFRIMGFSILGSAVLSVFIFI 443
                  56777788888888888888999999999999999999999888765 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   6.1   1.4e-11   9.9e-09       8     180 ..      42     219 ..      36     228 .. 0.71
   2 ?   -1.3   0.7      0.26   1.8e+02     271     343 ..     297     375 ..     262     390 .. 0.51
   3 ?   -4.1   0.5       1.9   1.3e+03     284     318 ..     405     438 ..     395     448 .. 0.67

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.4e-11
    TIGR00891   8 rdqwnafsaaylgylldafdfflvalvlaevaeefdrttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvl....sGllisgya.vGfvlaavvysvvvnvl.gdsWriLfflsilpiil 180
                  r + +af  ++ g+ ++ f +f +a  l+e+ +  ++t++++     + ++   +   +lG   D+ g r+p+v  + + s+ t l++  +t + l i+rl iG + gG + +    +     k+  + +     G    g      v+ ++++ ++ n++ gd+ ++  ++si+p+++
  MMETSP1061-20121228|43929_1  42 RPHMRAFHCSWWGFFIAFFIWFAIAPLLSEIRDDLGLTKQQIWTSSIVGVAGTILMRFILGPACDKFGARIPMVAVLCFASIPTALTGLVNTSTGLAILRLFIGAA-GGTFVMCQYWSSRMFCKEVVGTAnalcGGWGNLGGGvTQLVMGSLLFPLFKNFFdGDASKAWRYVSIVPAVV 219
                  66789************************************965555555666666789*********************************************76.666655444333333333333320000333222222023455556666666554135556666666666665 PP

  == domain 2    score: -1.3 bits;  conditional E-value: 0.26
    TIGR00891 271 lskdtvavivvvsniGaivGglvfGtlse....vlgrr...kalvialllgqllivPvfals..aekavLglglfllqllvq 343
                  ls++++a i  + ++  +    ++G++s+    +lg r    a  ++ll+   ++v vfa +     a++ +  f+  l+vq
  MMETSP1061-20121228|43929_1 297 LSTESAAAIASIFGFMNLFARGLGGFMSDhgnkYLGMRgriAAQTFCLLIE-AVLVLVFAQTdkLRDAIIVMV-FF-SLFVQ 375
                  444444444444444444444444444431111344331113445555555.555567776533233444444.22.22333 PP

  == domain 3    score: -4.1 bits;  conditional E-value: 1.9
    TIGR00891 284 niGaivGglvfGtlsevlgrrkalvialllgqlli 318
                  n Ga++ gl f  l ++++ r    +++l + +l 
  MMETSP1061-20121228|43929_1 405 NTGAVCFGLGFRNLDDKTAFRIM-GFSILGSAVLS 438
                  67888888888888888887753.23333333333 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6  14.0   9.3e-10   6.3e-07       3     368 ..      54     417 ..      52     429 .. 0.77

  Alignments for each domain:
  == domain 1    score: 26.6 bits;  conditional E-value: 9.3e-10
    TIGR00881   3 gylayylvRknfalalpelqeeiglsktdlGlllsafsiaYgi.skfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllai.....allls......whvvfivpgiiaiivslilllllrdspqsvglpkleelrneekeedkekkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDk..lfkgrraplavifmaliivsllvywlivaanklvvlillfvl.GflvyGpilligvaaselapkkaiGtaaglvglfaylggilaglplgy 368
                  g+++ +++   +a +l e+++++gl+k+++   +s + +a +i  +f+ g + D+ +ar+ + + L  ++i + + g +++ + l++l+++ G + g+ +++c+    + f ++  Gt+ a+     n+gg++    v+ ++     + +++      w+ v ivp+++a   ++ +  +  d p           + +++e +k+   ++ ++  ++ ++  +n + w++ + +   + v + +++ + lY +++  ls e+a ++ ++f +  l    l G++sD+   + g r+ +a    +l+i ++lv+   ++ +kl ++i+++v+  ++v   +  +    +  + + a G+ +g+vg  ++ g++  gl++  
  MMETSP1061-20121228|43929_1  54 GFFIAFFIWFAIAPLLSEIRDDLGLTKQQIW-TSSIVGVAGTIlMRFILGPACDKFGARIPMVAVLCFASIPTALTGLVNTSTGLAILRLFIGAAGGT-FVMCQYWSSRMFCKEVVGTANALCGGWGNLGGGVTQL-VMGSLlfplfKNFFDgdaskaWRYVSIVPAVVAFGTAVTIYYISDDAP-----------KGNYSELKKHGVMADISAAASF-RQGAFNFNTWILFIQYACSFGVELTMNNAAALYFKDKFLLSTESAAAIASIFGFMNLFARGLGGFMSDHgnKYLGMRGRIAAQTFCLLIEAVLVLVF-AQTDKLRDAIIVMVFfSLFVQA-AEGTTYGIVPYVDPPATGSISGIVGAGGNTGAVCFGLGFRN 417
                  677777777777888999***********95.4566666666538************************************************98776.777777999************************9984.433320111122222111122555566666666666555555544444...........4444333333344455555555.55568999************************************************************999999****************9999987.7777788777766650444443.4445566677888899**************99988887765 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.8   5.2   5.1e-08   3.5e-05       5     114 ..      92     197 ..      89     233 .. 0.80
   2 ?   -2.4   0.1       1.5     1e+03      87     106 ..     262     281 ..     245     312 .. 0.56
   3 ?   -1.6   0.5      0.87   5.9e+02      91     112 ..     304     325 ..     261     357 .. 0.61
   4 ?   -3.7   2.2       3.6   2.5e+03      74      74 ..     383     383 ..     307     444 .. 0.51

  Alignments for each domain:
  == domain 1    score: 21.8 bits;  conditional E-value: 5.1e-08
    TIGR00880   5 agyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalglls.agialgpilGpllGavlaqal 114
                  ag  l+ ++++p ++    ++G +++++  l++ ++ ++l+ l+++ t+l+i+r+++G +++++ v+ +   ++++ +e ++ a +l   +g   g +  +++G++l++ +
  MMETSP1061-20121228|43929_1  92 AGTILMRFILGPACD----KFGARIPMVAVLCFASIPTALTGLVNTSTGLAILRLFIGAAGGTF-VMCQYWSSRMFCKEVVGTANALCGgWGNLGGGVTQLVMGSLLFPLF 197
                  555578889999999....***************************************999987.5666899999999999999999853777778888899999998443 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 1.5
    TIGR00880  87 valgllsagialgpilGpll 106
                   ++ ++ ++i  ++++G  l
  MMETSP1061-20121228|43929_1 262 FNFNTWILFIQYACSFGVEL 281
                  34555666666666666544 PP

  == domain 3    score: -1.6 bits;  conditional E-value: 0.87
    TIGR00880  91 llsagialgpilGpllGavlaq 112
                   +++++ + ++++  lG+++ +
  MMETSP1061-20121228|43929_1 304 AIASIFGFMNLFARGLGGFMSD 325
                  3344444455666666666664 PP

  == domain 4    score: -3.7 bits;  conditional E-value: 3.6
    TIGR00880  74 a 74 
                  +
  MMETSP1061-20121228|43929_1 383 G 383
                  2 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       185  (0.0451); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.33u 0.15s 00:00:00.48 Elapsed: 00:00:00.33
# Mc/sec: 1923.84
//
Query:       MMETSP1061-20121228|43977_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 416.81
//
Query:       MMETSP1061-20121228|43981_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|43979_1  [L=350]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (350 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1490.20
//
Query:       MMETSP1061-20121228|44006_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|44015_1  [L=526]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.6    7.6   9.6        4.2    6.3   6.7    1.7  1  TIGR03501 rhombo_CTERM: Rhombo-CTERM domain


Domain annotation for each model (and alignments):
>> TIGR03501  rhombo_CTERM: Rhombo-CTERM domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.3   6.7     0.001       4.2       7      22 .]     257     272 ..     256     272 .. 0.58

  Alignments for each domain:
  == domain 1    score: 6.3 bits;  conditional E-value: 0.001
    TIGR03501   7 wlsLLlLlllglrRrk 22 
                  w++LLlLlll + Rr+
  MMETSP1061-20121228|44015_1 257 WWFLLLLLLLCCCRRR 272
                  6666666666666654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (526 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.33
# Mc/sec: 2103.83
//
Query:       MMETSP1061-20121228|44042_1  [L=161]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00064   16.7   2.2    0.00071   16.6   1.5    1.1  1  TIGR00899 2A0120: sugar efflux transporter
    0.00087   17.3   3.2     0.0013   16.7   2.2    1.3  1  TIGR00880 2_A_01_02: multidrug resistance protein
     0.0013   15.6   5.3     0.0015   15.3   3.7    1.0  1  TIGR00893 2A0114: D-galactonate transporter


Domain annotation for each model (and alignments):
>> TIGR00899  2A0120: sugar efflux transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   1.5   5.2e-07   0.00071       5     117 ..       3     114 ..       2     153 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 5.2e-07
    TIGR00899   5 vafligiagalqlPtLsvfLseevkarpaavGlfytlsaivgiavsqllaka.sDkqgdrkkLilaclllavlaavlfalnrnYlvllvlgvlLsslastavPqlfaLarehad 117
                  vaf+ +    + + tLs++  +  ++ p ++G +++   + +++++ +l +      g++ ++ +  + +++   vl a nr++ ++ ++g  Ls l++ + P l +L    ++
  MMETSP1061-20121228|44042_1   3 VAFFYYTGLWAVISTLSLYAVQHFHMTPQVLGELMSALGLSTMVAEAVLVRFlVPLLGEKTSIRIGLVSFGLQCLVLGAANRSWQLFFCVG--LSVLGNLVYPSLSSLVTGIVE 114
                  56777777778899*********************************9999725567777777788888898888999*******998777..9************99877665 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   2.2   9.8e-07    0.0013       4     113 ..      37     146 ..      34     160 .. 0.87

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 9.8e-07
    TIGR00880   4 lagyAlgqlvv.splsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpl.lGavlaqa 113
                  + + +l+++v+ + l+ +l+  +G k  + +gl+ f l  l++ +++  ++l+++ +  ++ ++ + ++  +l+  i+++++++ alg ++ + al   lGpl +G++++ +
  MMETSP1061-20121228|44042_1  37 MSALGLSTMVAeAVLVRFLVPLLGEKTSIRIGLVSFGLQCLVLGAANRSWQLFFC-VGLSVLGNLVYPSLSSLVTGIVEPDTVGEALGAINGIKALTEGLGPLvFGTLMT-V 146
                  567788888875789999999*********************************9.5668999**************************************972566665.3 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   3.7   1.1e-06    0.0015     227     373 ..       7     146 ..       2     153 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 1.1e-06
    TIGR00893 227 vnillyffltwfplylkqerglslleagllaslpaivgfvg.mvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkglaailwavisdvlskeiagltgGlinllGnlagivgPivigaiaat 373
                  + ++l+  ++  +ly +q + +++   g l s  ++  +v+  vl+ +l +ll +k+     ++ ++++ + + +l+l+a+n    ++     v l+++g+++   l ++++  +++ ++g + G+in + +l   +gP+v+g + ++
  MMETSP1061-20121228|44042_1   7 YYTGLWAVISTLSLYAVQHFHMTPQVLGELMSALGLSTMVAeAVLVRFLVPLLGEKT-----SIRIGLVSFGLQCLVLGAAN---RSWQLFFCVGLSVLGNLVYPSLSSLVTGIVEPDTVGEALGAINGIKALTEGLGPLVFGTLMTV 146
                  44455555556899999*****999999999999999999856899999*******7.....88888888889999999998...9***************99****************************************98776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (161 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 758.94
//
Query:       MMETSP1061-20121228|44054_1  [L=730]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (730 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.12s 00:00:00.46 Elapsed: 00:00:00.38
# Mc/sec: 2535.58
//
Query:       MMETSP1061-20121228|44070_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-48  163.6   0.1    1.7e-48  163.4   0.1    1.0  1  TIGR03356 BGL: beta-galactosidase
    7.1e-34  115.3   0.0    7.8e-34  115.2   0.0    1.0  1  TIGR01233 lacG: 6-phospho-beta-galactosidase


Domain annotation for each model (and alignments):
>> TIGR03356  BGL: beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.4   0.1   8.1e-52   1.7e-48      73     202 ..       1     135 [.       1     136 [] 0.93

  Alignments for each domain:
  == domain 1    score: 163.4 bits;  conditional E-value: 8.1e-52
    TIGR03356  73 fsiaWpRilpegt.Gk.vnekGldfYdrlvdelleagiepvvtlyHWdLPqaledk.GGWanrdtaeafaeYaevvaerlgdrvkkwitlnEplvvallgyllGvhapglkdl..kealkaahhlllahglavka 202
                  fsiaW+Rilp+g+ G+ +n++G++fY+rl++ell++ iep+vtlyHWdLPq+led+ GGW + +++e f +Ya++++e++gdrvk+wit+nEp+++a+ gy  G++apg+ +    + + aahhlllah+ av++
  MMETSP1061-20121228|44070_1   1 FSIAWSRILPDGKvGEgINPTGIAFYNRLINELLKNSIEPWVTLYHWDLPQSLEDEyGGWLSPSVIEDFGKYASLCFEAYGDRVKRWITINEPWTMAVQGYEDGTKAPGKMENprVDVYLAAHHLLLAHARAVRI 135
                  9**********9755449***********************************9866****************************************************977521456889***********986 PP

>> TIGR01233  lacG: 6-phospho-beta-galactosidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.2   0.0   3.8e-37   7.8e-34      73     202 ..       2     136 .]       1     136 [] 0.91

  Alignments for each domain:
  == domain 1    score: 115.2 bits;  conditional E-value: 3.8e-37
    TIGR01233  73 siawsrifpdga.ge.veekgvefyhklfaecakrhvepfvtlhhfdtpealh.eagdflsrenledfvdyakfcfeefse.vkywitineitsiavqqylvgkfppaikyd.ldkvfqaehnqmvaharivkly 202
                  siawsri+pdg  ge +++ g++fy +l+ e  k+ +ep+vtl+h+d p++l  e g +ls   +edf +ya++cfe + + vk witine+ ++avq y  g+  p++  +    v+ a h  ++ahar+v++y
  MMETSP1061-20121228|44070_1   2 SIAWSRILPDGKvGEgINPTGIAFYNRLINELLKNSIEPWVTLYHWDLPQSLEdEYGGWLSPSVIEDFGKYASLCFEAYGDrVKRWITINEPWTMAVQGYEDGTKAPGKMENpRVDVYLAAHHLLLAHARAVRIY 136
                  9**********647669***********************************7257**********************9754**********************9999765425679999999**********98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 815.93
//
Query:       MMETSP1061-20121228|44075_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|44118_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 301.69
//
Query:       MMETSP1061-20121228|44111_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1611.87
//
Query:       MMETSP1061-20121228|44117_1  [L=920]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (920 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.13s 00:00:00.53 Elapsed: 00:00:00.46
# Mc/sec: 2639.78
//
Query:       MMETSP1061-20121228|44155_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       247  (0.0602145); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.13s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2542.99
//
Query:       MMETSP1061-20121228|44192_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 802.93
//
Query:       MMETSP1061-20121228|44197_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 763.24
//
Query:       MMETSP1061-20121228|44201_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 327.10
//
Query:       MMETSP1061-20121228|44198_1  [L=687]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-05   21.0   0.0    4.6e-05   20.3   0.0    1.2  1  TIGR03449 mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
    6.7e-05   19.9   0.0    0.00011   19.3   0.0    1.3  1  TIGR04047 MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
      0.006   13.4   0.0     0.0091   12.8   0.0    1.2  1  TIGR03999 thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
  ------ inclusion threshold ------
      0.029   11.2   0.0      0.049   10.5   0.0    1.3  1  TIGR03088 stp2: sugar transferase, PEP-CTERM/EpsH1 system associated


Domain annotation for each model (and alignments):
>> TIGR03449  mycothiol_MshA: UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   4.5e-08   4.6e-05     296     334 ..     388     427 ..     379     440 .. 0.83

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 4.5e-08
    TIGR03449 296 elvevy.raadvvavPsysesfGlvaleaqasGtPvvaar 334
                  e+v+ y + a++   Ps  e fG+  +e+qa GtPv++++
  MMETSP1061-20121228|44198_1 388 EVVAAYkKRASICLHPSKVEGFGMNVMECQAVGTPVITTN 427
                  445555167999*************************987 PP

>> TIGR04047  MSMEG_0565_glyc: glycosyltransferase, MSMEG_0565 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0     1e-07   0.00011     249     311 ..     368     431 ..     362     499 .. 0.74

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 1e-07
    TIGR04047 249 aaeleleigavvilGavddaelpaLvrlAdalaf.pslkEGfGLvvlEalAsGvPvvaselaPf 311
                  ++ ++l++ a ++  av+  e++a ++  +++++ ps  EGfG+ v+E  A G+Pv++ + + +
  MMETSP1061-20121228|44198_1 368 LHDYDLPPDAYTMDIAVHAPEVVAAYKKRASICLhPSKVEGFGMNVMECQAVGTPVITTNYTAM 431
                  555666666666667777778888887666665538999******************9987654 PP

>> TIGR03999  thiol_BshA: N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   8.9e-06    0.0091     272     313 ..     396     437 ..     385     491 .. 0.89

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8.9e-06
    TIGR03999 272 lsDllllpsekesFGLaaLeamacgvpviasnvgGlpevvee 313
                   + + l ps+ e FG+ ++e  a+g pvi++n   + ++ + 
  MMETSP1061-20121228|44198_1 396 RASICLHPSKVEGFGMNVMECQAVGTPVITTNYTAMGDFTKL 437
                  57899***************************9988877665 PP

>> TIGR03088  stp2: sugar transferase, PEP-CTERM/EpsH1 system associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   4.7e-05     0.049     272     309 ..     396     433 ..     385     492 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 4.7e-05
    TIGR03088 272 alDvfvLpslaeGisntvLeamasglPviatavGGnae 309
                   + +   ps+ eG  + v+e  a g Pvi+t+   + +
  MMETSP1061-20121228|44198_1 396 RASICLHPSKVEGFGMNVMECQAVGTPVITTNYTAMGD 433
                  5567778***********************98655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (687 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.34u 0.14s 00:00:00.48 Elapsed: 00:00:00.43
# Mc/sec: 2108.76
//
Query:       MMETSP1061-20121228|44210_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 472.96
//
Query:       MMETSP1061-20121228|44214_1  [L=120]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (120 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 688.64
//
Query:       MMETSP1061-20121228|44204_1  [L=907]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (907 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.39u 0.13s 00:00:00.52 Elapsed: 00:00:00.34
# Mc/sec: 3521.00
//
Query:       MMETSP1061-20121228|44234_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1217.90
//
Query:       MMETSP1061-20121228|44249_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 425.30
//
Query:       MMETSP1061-20121228|44252_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|44265_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.6e-05   21.9   0.0    2.9e-05   21.7   0.0    1.1  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    5.7e-05   20.7   0.0    6.3e-05   20.6   0.0    1.0  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    0.00023   18.4   0.0    0.00025   18.3   0.0    1.0  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
  ------ inclusion threshold ------
      0.011   13.1   0.0      0.012   13.0   0.0    1.1  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.7   0.0   2.9e-08   2.9e-05     199     237 ..       3      39 ..       1      41 [. 0.94

  Alignments for each domain:
  == domain 1    score: 21.7 bits;  conditional E-value: 2.9e-08
    TIGR01830 199 eqiplkrlgkpeevaaavafLasdeasyitGqvlkvdGG 237
                  +++plkr+g+p+++ +a+ +L    a + tG vl vdGG
  MMETSP1061-20121228|44265_1   3 DSLPLKRTGEPSDMGEAIYYLLT--AGFCTGVVLDVDGG 39 
                  679******************98..9************9 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.6   0.0   6.2e-08   6.3e-05     201     240 ..       3      40 ..       1      42 [. 0.93

  Alignments for each domain:
  == domain 1    score: 20.6 bits;  conditional E-value: 6.2e-08
    TIGR01829 201 aqiPvkrlgkpeeiaaavaflaseeagyvtGatlsvnGGl 240
                  +++P+kr g+p ++++a+ +l   +ag+ tG  l+v+GG+
  MMETSP1061-20121228|44265_1   3 DSLPLKRTGEPSDMGEAIYYLL--TAGFCTGVVLDVDGGH 40 
                  689******************8..59*************7 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.3   0.0   2.5e-07   0.00025     209     248 ..       3      40 ..       1      42 [. 0.91

  Alignments for each domain:
  == domain 1    score: 18.3 bits;  conditional E-value: 2.5e-07
    TIGR03206 209 raiplgrlgkpddlagailflasddaafitgqvlsvsggl 248
                   ++pl r g+p d+  ai +l +  a+f tg vl v gg 
  MMETSP1061-20121228|44265_1   3 DSLPLKRTGEPSDMGEAIYYLLT--AGFCTGVVLDVDGGH 40 
                  589*****************975..9************95 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.0   0.0   1.1e-05     0.012     207     245 ..       4      40 ..       1      43 [. 0.89

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 1.1e-05
    TIGR01832 207 riPagrwGepedlagaavflassasdyvnGailavdGGw 245
                   +P  r Gep+d+++a+ +l +  + + +G++l vdGG 
  MMETSP1061-20121228|44265_1   4 SLPLKRTGEPSDMGEAIYYLLT--AGFCTGVVLDVDGGH 40 
                  68999***********999986..679**********95 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 493.22
//
Query:       MMETSP1061-20121228|44275_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-96  320.7   0.0      3e-96  320.5   0.0    1.0  1  TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
      1e-51  173.9   0.0    1.9e-27   94.0   0.0    2.0  2  TIGR01328 met_gam_lyase: methionine gamma-lyase
    1.2e-48  163.5   0.1    1.4e-29  100.7   0.0    2.0  2  TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
    7.1e-36  121.5   0.0      7e-19   65.6   0.0    2.0  2  TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
    3.4e-30  102.8   0.0      3e-17   60.2   0.0    2.0  2  TIGR01329 cysta_beta_ly_E: cystathionine beta-lyase
    1.3e-24   84.4   0.0    1.8e-13   47.8   0.0    2.0  2  TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase
    3.1e-06   24.1   0.0    4.1e-06   23.7   0.0    1.2  1  TIGR01264 tyr_amTase_E: tyrosine aminotransferase
    5.3e-06   23.5   0.0    7.5e-06   23.0   0.0    1.1  1  TIGR01265 tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
      9e-06   22.6   0.0    1.4e-05   21.9   0.0    1.2  1  TIGR01979 sufS: cysteine desulfurase, SufS family
    0.00013   19.2   0.0    0.00019   18.7   0.0    1.2  1  TIGR01976 am_tr_V_VC1184: cysteine desulfurase family protein
    0.00037   17.4   0.0    0.00046   17.1   0.0    1.1  1  TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein
     0.0014   15.5   0.0     0.0018   15.1   0.0    1.1  1  TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme
     0.0022   15.0   0.0     0.0029   14.7   0.0    1.1  1  TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
     0.0022   14.9   0.0     0.0031   14.4   0.0    1.1  1  TIGR02539 SepCysS: Sep-tRNA:Cys-tRNA synthase
     0.0037   14.0   0.0     0.0052   13.5   0.0    1.1  1  TIGR03812 tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
      0.006   13.2   0.0     0.0079   12.9   0.0    1.1  1  TIGR03403 nifS_epsilon: cysteine desulfurase, NifS family
     0.0067   13.3   0.0     0.0094   12.8   0.0    1.2  1  TIGR02006 IscS: cysteine desulfurase IscS
  ------ inclusion threshold ------
      0.011   12.5   0.0      0.017   11.8   0.0    1.3  1  TIGR01141 hisC: histidinol-phosphate transaminase
      0.035   10.8   0.0      0.052   10.3   0.0    1.1  1  TIGR03540 DapC_direct: LL-diaminopimelate aminotransferase


Domain annotation for each model (and alignments):
>> TIGR01326  OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  320.5   0.0   1.4e-98     3e-96     130     393 ..       4     288 .]       1     288 [] 0.94

  Alignments for each domain:
  == domain 1    score: 320.5 bits;  conditional E-value: 1.4e-98
    TIGR01326 130 ddleelekaidentkavfletignPkldvlDiekvaevakkagvplivDntvatp.ylvrPlehGadivvhsatkylgGhgtaigGvivdsgkfdwkk......ekfpeltePdpsYhGlkftealg......nlafivkvrvellrdlGaalsPfnaflllqGletLslrlerhvenalkvaefLekhpkvkk..vnypgLasssehelakkylekg.agavlsfevkggkeaakk.....fidalkLasklanvgDakslvihPastthkqlseeeqlkaGvt 393
                  +dl+++e +id++tka+++et++nP+  ++D+e + ++a +a++p+++Dnt++ + y++rPl+ Gadivv+satk++gGhgt+igG+ivd+ +f+w         kfp ++ P++sYhG +f+e+        n++fi+ +rv++lrd+G  +sPfna++l+qG+etLslr++ h+ena ++a +L+khpkvkk  v +p+L+ +++he+a ky++ g +g+v+ f++ g  ++++k     fi +lk++ +lanvgD+++lvi+P  tth+qls e+q++aG++
  MMETSP1061-20121228|44275_1   4 SDLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFGMGgYVCRPLRLGADIVVESATKWIGGHGTSIGGIIVDGSSFNWCVknddgsFKFPLVAGPQESYHGGVFAEHPVfgvqatNTVFILLARVRTLRDMGGCISPFNAWQLIQGIETLSLRAKAHSENANALALWLSKHPKVKKgsVLHPSLSYHPSHENAIKYFRPGcFGSVFCFDLTGADAEDEKargasFITNLKMCAHLANVGDSRTLVIQPSVTTHQQLSMEQQAAAGIK 288
                  68899***********************************************9988****************************************8644444347******************7555688999**********************************************************965589*****************9999*********99988877778888*****************************************95 PP

>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.1   0.0   5.7e-25   1.2e-22     133     221 ..       5      94 ..       1     101 [. 0.92
   2 !   94.0   0.0   8.6e-30   1.9e-27     214     363 ..     130     287 ..     119     288 .] 0.90

  Alignments for each domain:
  == domain 1    score: 78.1 bits;  conditional E-value: 5.7e-25
    TIGR01328 133 speevkaaikdntkivyfetpanptlklidleavvrvakekgvkvivdntfa.tplltrpvalGvdvvvhsatkyigGhgdvvaGvliGd 221
                    ++v + i+d+tk +y+et anp+  + d+e + ++a e+++ v+ dntf    ++ rp+ lG+d+vv satk+igGhg  ++G+++ +
  MMETSP1061-20121228|44275_1   5 DLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFGmGGYVCRPLRLGADIVVESATKWIGGHGTSIGGIIVDG 94 
                  55678899*******************************************72579******************************9865 PP

  == domain 2    score: 94.0 bits;  conditional E-value: 8.6e-30
    TIGR01328 214 vaGvliGdaellqrirlvgvkdltGavispfdaflvlrGlktlavrmkresenaekvaeklkehpavek..vlypGleehedrdiaakqmkkg..Ggllafelkggead.....aakllnrlklirlavslGdaetliqhpasmthavvpkeereaaGi 363
                  v Gv + ++  + + r+ +++d++G  ispf+a+ +++G++tl++r k++sena+++a +l +hp+v+k  vl+p l  h+ ++ a k  + g  G++++f l g+ a+     +a ++ +lk+      +Gd+ tl+  p+  th  ++ e+++aaGi
  MMETSP1061-20121228|44275_1 130 VFGVQATNTVFILLARVRTLRDMGG-CISPFNAWQLIQGIETLSLRAKAHSENANALALWLSKHPKVKKgsVLHPSLSYHPSHENAIKYFRPGcfGSVFCFDLTGADAEdekarGASFITNLKMCAHLANVGDSRTLVIQPSVTTHQQLSMEQQAAAGI 287
                  557777777788889999*******.9****************************************97669******************987779********98765122225679****************************************9 PP

>> TIGR01325  O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.0   0.0   7.5e-20   1.6e-17     126     216 ..       3      94 ..       1     103 [. 0.93
   2 !  100.7   0.0   6.4e-32   1.4e-29     224     355 ..     146     287 ..     130     288 .] 0.89

  Alignments for each domain:
  == domain 1    score: 61.0 bits;  conditional E-value: 7.5e-20
    TIGR01325 126 atdlkaWeaalkantkllfletPsnPlaelvdiaalaelahavGaklvvdnvf.atPvlqqplklGadvvvysatkaidGqGrvlGGvilgs 216
                   +dlk+ e+ +  +tk++++et +nP   + d + +  +a  +   +v dn+f +   + +pl+lGad+vv satk i G+G  +GG+i+  
  MMETSP1061-20121228|44275_1   3 ISDLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFgMGGYVCRPLRLGADIVVESATKWIGGHGTSIGGIIVDG 94 
                  68***************************************************4457899****************************9864 PP

  == domain 2    score: 100.7 bits;  conditional E-value: 6.4e-32
    TIGR01325 224 akllrstGpalspfnaWvllkGletlslrvqkqadsalklaefleeqpkvqa..vyyaglPdhPqaelakrq.qsG.gGtvvafdlkg......reaafkvldalelvdisnnlGdakslithPattthrrlspeeraalgi 355
                  ++ lr  G ++spfnaW+l++G+etlslr ++++++a +la +l+++pkv++  v+++ l  hP +e a +  + G +G v +fdl g      +++   ++ +l++    +n+Gd+++l+  P  tth++ls e++aa+gi
  MMETSP1061-20121228|44275_1 146 VRTLRDMGGCISPFNAWQLIQGIETLSLRAKAHSENANALALWLSKHPKVKKgsVLHPSLSYHPSHENAIKYfRPGcFGSVFCFDLTGadaedeKARGASFITNLKMCAHLANVGDSRTLVIQPSVTTHQQLSMEQQAAAGI 287
                  56799*********************************************95559**********9877654144448********9888888888999*****************************************99 PP

>> TIGR02080  O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0     1e-17   2.2e-15     124     211 ..       4      92 ..       1     103 [. 0.94
   2 !   65.6   0.0   3.2e-21     7e-19     228     355 ..     152     288 .]     144     288 .] 0.89

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 1e-17
    TIGR02080 124 sdeealekalaekpklvlietPsnPllrvvdiaklcklakaagavvvvdntf.lsPilqkPlalGadlvlhsatkylnGhsdviaGavi 211
                  sd + +e  + +k+k ++iet +nP   + d + + k+a +a + vv dntf +   + +Pl lGad+v+ satk++ Gh   i+G+++
  MMETSP1061-20121228|44275_1   4 SDLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFgMGGYVCRPLRLGADIVVESATKWIGGHGTSIGGIIV 92 
                  6778889999******************************************889999****************************987 PP

  == domain 2    score: 65.6 bits;  conditional E-value: 3.2e-21
    TIGR02080 228 lGvtgaafdsylllrGlrtlaarvreqernakkiveylqkqplvkk..vyypglpdhagheiaakqqk..GfGallsfelkGgeee.....vkkflkklklftlaeslGGvesliahpatmthaamekeareeaGik 355
                  +G   ++f++++l++G+ tl+ r + + +na++++ +l+k+p+vkk  v +p+l+ h+ he a k  +   fG+++ f+l G+ +e        f+++lk+ +    +G   +l+ +p+  th++++ e +++aGik
  MMETSP1061-20121228|44275_1 152 MGGCISPFNAWQLIQGIETLSLRAKAHSENANALALWLSKHPKVKKgsVLHPSLSYHPSHENAIKYFRpgCFGSVFCFDLTGADAEdekarGASFITNLKMCAHLANVGDSRTLVIQPSVTTHQQLSMEQQAAAGIK 288
                  566779**************************************97669**************99765436**********9765411111357*******999999****************************96 PP

>> TIGR01329  cysta_beta_ly_E: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.2   0.0   1.4e-19     3e-17     117     210 ..       2      92 ..       1     100 [. 0.93
   2 !   40.8   0.0   1.1e-13   2.4e-11     226     342 ..     151     276 ..     130     286 .. 0.74

  Alignments for each domain:
  == domain 1    score: 60.2 bits;  conditional E-value: 1.4e-19
    TIGR01329 117 dttdlekvkavlgdlpktklvllesPtnPlikivdirkiaeaakalnedalvvvdntm.lspllcnPlelGadivlesatkylaGhsdvmaGvla 210
                  +++dl++v++ +   +ktk +++e+ +nP   i d + i ++a + +  + vv dnt+ + +  c+Pl lGadiv+esatk++ Gh   ++G+++
  MMETSP1061-20121228|44275_1   2 NISDLKQVESLID--DKTKAIYIETLANPSGTIPDFEGIKKIATEAK--IPVVCDNTFgMGGYVCRPLRLGADIVVESATKWIGGHGTSIGGIIV 92 
                  5678899999998..9**************************99888..9*******889********************************997 PP

  == domain 2    score: 40.8 bits;  conditional E-value: 1.1e-13
    TIGR01329 226 seGaglaPfdswlllrGiktlairlekqqenavaialfletrsrvas.kvryaGlksepdfklhks.qakGa.Gavlsfe.tGsva.....lskrlveaaklfaitvsfGsvnslismPcklshas 342
                    G  ++Pf++w l++Gi tl++r +   ena+a+al+l+++++v+   v ++ l  +p ++     +  G  G+v+ f+ tG  a     +   ++   k+ a     G  ++l+  P   +h  
  MMETSP1061-20121228|44275_1 151 DMGGCISPFNAWQLIQGIETLSLRAKAHSENANALALWLSKHPKVKKgSVLHPSLSYHPSHENAIKyFRPGCfGSVFCFDlTGADAedekaRGASFITNLKMCAHLANVGDSRTLVIQPSVTTHQQ 276
                  468889*************************************986427999*******9986544144453499999964665430111133456666666666666777777777777666665 PP

>> TIGR01324  cysta_beta_ly_B: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.8   0.0   7.1e-12   1.5e-09     127     210 ..       8      92 ..       2     123 .. 0.83
   2 !   47.8   0.0   8.2e-16   1.8e-13     222     326 ..     148     260 ..     129     284 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.8 bits;  conditional E-value: 7.1e-12
    TIGR01324 127 diaalikpntkvvfleaPasltlevqdiPaiakaaraagvvvlidntwaag.llfkalehgvdisiqaatkylaGhsdvllGtva 210
                  ++ +li  +tk +++e+ a  +  ++d   i k+a +a + v+ dnt+  g  + ++l  g di +++atk+++Gh   + G ++
  MMETSP1061-20121228|44275_1   8 QVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFGMGgYVCRPLRLGADIVVESATKWIGGHGTSIGGIIV 92 
                  6789********************************************9761567*********************987666555 PP

  == domain 2    score: 47.8 bits;  conditional E-value: 8.2e-16
    TIGR01324 222 alyllGqsvdaddaytvlrGlrtlgvrlkrhqesalaiakwleeqkevar..vlhPalPsdpghelfkrdfsGss.G.lfsvvlkrlsqkevha....fldalklfglgyswG 326
                  +l ++G ++++ +a+++++G+ tl+ r k h e+a a+a wl+++++v++  vlhP+l  +p he   + f   + G +f + l ++  ++ +a    f+ +lk+ +     G
  MMETSP1061-20121228|44275_1 148 TLRDMGGCISPFNAWQLIQGIETLSLRAKAHSENANALALWLSKHPKVKKgsVLHPSLSYHPSHENAIKYFRPGCfGsVFCFDLTGADAEDEKArgasFITNLKMCAHLANVG 260
                  5679********************************************9666*************999999754434489999977665544322223888888776555555 PP

>> TIGR01264  tyr_amTase_E: tyrosine aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   1.9e-08   4.1e-06     159     213 ..       5      56 ..       2     101 .. 0.90

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 1.9e-08
    TIGR01264 159 dlkelesliddktkalivnnPsnPcGsvfsrkhleellalaerlklpiladeiye 213
                  dlk++esliddktka+ ++  +nP+G++ + +    + ++a + k+p++ d+ ++
  MMETSP1061-20121228|44275_1   5 DLKQVESLIDDKTKAIYIETLANPSGTIPDFE---GIKKIATEAKIPVVCDNTFG 56 
                  9*************************997755...5556799999***9999876 PP

>> TIGR01265  tyr_nico_aTase: tyrosine/nicotianamine aminotransferases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.0   0.0   3.5e-08   7.5e-06     158     212 ..       5      56 ..       2      67 .. 0.87

  Alignments for each domain:
  == domain 1    score: 23.0 bits;  conditional E-value: 3.5e-08
    TIGR01265 158 dldelealaDektvalvvinPsnPcGsvfsrdHlekvvevaeklklliiaDEvYd 212
                  dl+++e+l+D+kt+a+ +   +nP+G++ + + ++k   +a++ k++++ D+ ++
  MMETSP1061-20121228|44275_1   5 DLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKK---IATEAKIPVVCDNTFG 56 
                  9*************************9988766666...5778899999998775 PP

>> TIGR01979  sufS: cysteine desulfurase, SufS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.0   6.6e-08   1.4e-05     148     228 ..       5      85 ..       2      91 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 6.6e-08
    TIGR01979 148 dleeleelltektklvaithvsNvlGtvnpveeiiklahevgalvlvDgaqavphlkvdvkeldvDflvfsgHKllgptGi 228
                  dl+++e+l+++ktk + i  ++N +Gt+ + e i k+a e+++ v+ D + ++        +l++D +v s+ K +g  G 
  MMETSP1061-20121228|44275_1   5 DLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFGMGGYVCRPLRLGADIVVESATKWIGGHGT 85 
                  7899************************************************************************99886 PP

>> TIGR01976  am_tr_V_VC1184: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.7   0.0   8.8e-07   0.00019     149     225 ..       7      83 ..       3     101 .. 0.89

  Alignments for each domain:
  == domain 1    score: 18.7 bits;  conditional E-value: 8.8e-07
    TIGR01976 149 adlaallsdrTRLVAvtaasnllGsivdlaaltelvhaaGalvvvDavhyaphaliDvqalgaDllvcsaykffgPh 225
                  ++ ++l+ d+T+ + + + +n  G+i+d + + +++ +a   vv D        +     lgaD++v sa k++g h
  MMETSP1061-20121228|44275_1   7 KQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFGMGGYVCRPLRLGADIVVESATKWIGGH 83 
                  6889******************************************99877777777778**************998 PP

>> TIGR01977  am_tr_V_EF2568: cysteine desulfurase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   0.0   2.1e-06   0.00046     126     179 ..       5      58 ..       1      96 [. 0.86

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 2.1e-06
    TIGR01977 126 dvekikkaikkdtklivlshaSNvtGtilpieeiaelakekgilflvDaaqtaG 179
                  d++++++ i+++tk+i +   +N  Gti + e i ++a e  i ++ D +  +G
  MMETSP1061-20121228|44275_1   5 DLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFGMG 58 
                  78999*******************************************987666 PP

>> TIGR01437  selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   8.2e-06    0.0018     133     216 ..       1      85 [.       1     107 [. 0.82

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 8.2e-06
    TIGR01437 133 anecsaeqleaaitektaailyikshhavqksmlsveeavkvakehklPlivdaaa..eedlkkyvelGadlviysGakaiegPts 216
                  an ++ +q+e+ i +kt ai yi +      ++   e + k+a e k+P++ d        + + ++lGad+v+ s +k i g  +
  MMETSP1061-20121228|44275_1   1 ANISDLKQVESLIDDKTKAI-YIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFgmGGYVCRPLRLGADIVVESATKWIGGHGT 85 
                  7888999************7.*******9************************9751156677889**************988532 PP

>> TIGR03392  FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.3e-05    0.0029     144     220 ..       3      79 ..       1      92 [. 0.82

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.3e-05
    TIGR03392 144 lpdiellpelltkktrllalsqmsnvtGGapdlariialahkagavvvvdGaqGvvhlpadvqaldidfyafsghkl 220
                  + d++++  l+++kt+ + +  ++n +G +pd++ i ++a +a++ vv d + G+  +     +l  d+   s+ k 
  MMETSP1061-20121228|44275_1   3 ISDLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFGMGGYVCRPLRLGADIVVESATKW 79 
                  679***********************************************998876665555555555555555555 PP

>> TIGR02539  SepCysS: Sep-tRNA:Cys-tRNA synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   1.4e-05    0.0031     149     210 ..      19      80 ..       4     101 .. 0.80

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 1.4e-05
    TIGR02539 149 lallthvdgeyGnladakkvakvcrkkgvplllncaytvGrlpvsakevkadfivgsGhksm 210
                   + +       G ++d +++ k++ + ++p++ + ++ +G        ++ad +v s  k +
  MMETSP1061-20121228|44275_1  19 AIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFGMGGYVCRPLRLGADIVVESATKWI 80 
                  3333444455699********************************************98866 PP

>> TIGR03812  tyr_de_CO2_Arch: tyrosine decarboxylase MnfA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.4e-05    0.0052     143     197 ..       5      61 ..       2      71 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.4e-05
    TIGR03812 143 dvkkveeliedntiglvgiaGttelGlvDdieelskiakendlylhvDaafG..Gfv 197
                  d+k+ve+li+d+t ++     +   G++ d e + kia+e ++++  D  fG  G+v
  MMETSP1061-20121228|44275_1   5 DLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFGmgGYV 61 
                  899**********999888888899************************99632655 PP

>> TIGR03403  nifS_epsilon: cysteine desulfurase, NifS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.9   0.0   3.7e-05    0.0079     128     213 ..       4      91 ..       1      98 [. 0.91

  Alignments for each domain:
  == domain 1    score: 12.9 bits;  conditional E-value: 3.7e-05
    TIGR03403 128 itaeqvreaitektalvsvmwannetglifpikeigelckekgvlfhtdavqavgkipvdvqkvkvdflsfsahkfhgpkg..vgaly 213
                  ++ +qv + i +kt  + +   +n +g i + + i +++ e  +   +d +  +g       ++ +d++  sa k+ g +g  +g++ 
  MMETSP1061-20121228|44275_1   4 SDLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFGMGGYVCRPLRLGADIVVESATKWIGGHGtsIGGII 91 
                  67899***********************************************************************999874466665 PP

>> TIGR02006  IscS: cysteine desulfurase IscS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   4.3e-05    0.0094     129     214 ..       3      90 ..       1      95 [. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.3e-05
    TIGR02006 129 lidleelkaairddtilvsvmavnneiGviqdiaaigelcrerkvlfhvdaaqsvGkvpidleelkvdllslsahkiyGpkG..iGal 214
                  + dl+++++ i d+t  + + ++ n  G+i d++ i +++ e k+   +d + ++G       +l  d++  sa k  G  G  iG++
  MMETSP1061-20121228|44275_1   3 ISDLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEAKIPVVCDNTFGMGGYVCRPLRLGADIVVESATKWIGGHGtsIGGI 90 
                  56999***************************************************99999999999999999999999887445665 PP

>> TIGR01141  hisC: histidinol-phosphate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.1e-05     0.017     131     183 ..       4      55 ..       1      57 [. 0.92

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.1e-05
    TIGR01141 131 edleavleaakekvklvflasPnnPtGnllkreeiekvleevedalVVvDeAY 183
                   dl++v+  +++k+k +++ +  nP+G++ + e i+k++ e+ +  VV D+ +
  MMETSP1061-20121228|44275_1   4 SDLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKIATEA-KIPVVCDNTF 55 
                  68999999*********************************8.8999999865 PP

>> TIGR03540  DapC_direct: LL-diaminopimelate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.0   0.00024     0.052     152     206 ..       4      55 ..       2      60 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 0.00024
    TIGR03540 152 PdldaipedvlkkakilflnyPnnPtsavadkeffkevvefakeyniivvhdaay 206
                   dl+++++ +  k+k ++++   nP +++ d e +k++   a e +i vv d+++
  MMETSP1061-20121228|44275_1   4 SDLKQVESLIDDKTKAIYIETLANPSGTIPDFEGIKKI---ATEAKIPVVCDNTF 55 
                  58999999**********************99888875...77888999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       128  (0.0312043); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        37  (0.00901999); expected 4.1 (0.001)
Passed Fwd filter:                        19  (0.00463189); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              19  [number of targets reported over threshold]
# CPU time: 0.27u 0.16s 00:00:00.43 Elapsed: 00:00:00.28
# Mc/sec: 1357.60
//
Query:       MMETSP1061-20121228|44293_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|44290_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.25
# Mc/sec: 1610.27
//
Query:       MMETSP1061-20121228|44318_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 422.37
//
Query:       MMETSP1061-20121228|44330_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 365.97
//
Query:       MMETSP1061-20121228|44339_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 711.27
//
Query:       MMETSP1061-20121228|44327_1  [L=1013]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.2e-13   46.7   0.1    1.8e-11   41.3   0.0    2.4  1  TIGR03606 non_repeat_PQQ: dehydrogenase, PQQ-dependent, s-GDH family
  ------ inclusion threshold ------
      0.087    6.9   0.0       0.12    6.4   0.0    1.0  1  TIGR00864 PCC: polycystin cation channel protein


Domain annotation for each model (and alignments):
>> TIGR03606  non_repeat_PQQ: dehydrogenase, PQQ-dependent, s-GDH family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.0   8.9e-15   1.8e-11      43     274 ..      33     274 ..      28     298 .. 0.72

  Alignments for each domain:
  == domain 1    score: 41.3 bits;  conditional E-value: 8.9e-15
    TIGR03606  43 lwvteraageilrvnpet..GekkvvltlsevsvdaqheGllGlalhpefmkekgndyvyiaytyk.ngdkelpd....hakivryeydkatqtledevdllaGlp.agndhngGrlkfgpdgkiyytiGeqGrnqganllkpneaqrlptqeeldakdyaayaGkvlrlnldGsipednpeie.........Gvk......shiftyGhrnpqGlaftpdgt....lyaseqGpdsddelniia...kGGnyGwpnvaGyk 274
                  l + +r+   +  ++p+   G+   vl + e +    ++G+  +  hp+f+    n y+y++yty  ng  e  d     + + r+   +   +++de+ l+   p  ++ hngG +kfg dg +y t+G+ G+                  e  +++   +  G v+r+  dG ip dnp  e         G        s ++++G rnp  +a+ p+ +    +y s+ G  + +e+  ++   +  nyG+ ++ G  
  MMETSP1061-20121228|44327_1  33 LLICQRKGEVVALLDPDKpgGKLVDVLDMEEKVCSQGERGVSQILPHPDFL---KNRYLYLTYTYDiNGGCEFSDvdgpVNVLSRFRLTDDL-KMVDEKILVQTTPlPSKVHNGGDMKFGNDGYLYVTLGNGGKAN----------------EYGNSQKMNTLLGSVIRITDDGGIPPDNPFTEdkdracaksGSTsssrrcSELWAIGFRNPFRFAMNPNQKkytqFYVSDVGGATWEEISEVTsksPAKNYGYREMEGPC 274
                  667888888899999986213334477888888888899999999*****5...589********835777877752223456666665554.456788888888845899********************99742................122333445789*****************77522332222232222223368999**********999975222267899999999998766422256799998877755 PP

>> TIGR00864  PCC: polycystin cation channel protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.4   0.0   5.8e-05      0.12    1062    1123 ..     417     479 ..     409     493 .. 0.62

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 5.8e-05
    TIGR00864 1062 qvedslllaGktvdfeahplpspyG..vlyewdfGdGsallqqrrvahtyekrGtynvrlevnn 1123
                   ++ed ++     + f+      p G  + +ewdfGdG a  +    + +y k G ++v+l v +
  MMETSP1061-20121228|44327_1  417 KIEDKIFNINEDIIFDGSSSSDPDGneLSFEWDFGDGGASTKMI-KTRSYRKVGKFRVTLTVSD 479 
                   55555555555555555555445443356777777777754444.3567777777777777654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1013 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.48u 0.15s 00:00:00.63 Elapsed: 00:00:00.45
# Mc/sec: 2971.22
//
Query:       MMETSP1061-20121228|44341_1  [L=168]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (168 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|44347_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 514.76
//
Query:       MMETSP1061-20121228|44344_1  [L=798]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (798 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.28
# Mc/sec: 3761.69
//
Query:       MMETSP1061-20121228|44349_1  [L=1073]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1073 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 3827.68
//
Query:       MMETSP1061-20121228|44380_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 550.91
//
Query:       MMETSP1061-20121228|44385_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        15  (0.00365675); expected 82.0 (0.02)
Passed bias filter:                       15  (0.00365675); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 307.97
//
Query:       MMETSP1061-20121228|44389_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1127.91
//
Query:       MMETSP1061-20121228|44405_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.9   0.0       0.54    7.7   0.0    2.2  2  TIGR01738 bioH: putative pimeloyl-BioC--CoA transferase BioH
     0.0066   13.7   0.1       0.12    9.6   0.0    2.5  3  TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase


Domain annotation for each model (and alignments):
>> TIGR01738  bioH: putative pimeloyl-BioC--CoA transferase BioH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.2   0.0   0.00076       1.6      67     100 ..     107     140 ..      81     159 .. 0.70
   2 !    7.7   0.0   0.00026      0.54     188     225 ..     170     207 ..     162     224 .. 0.84

  Alignments for each domain:
  == domain 1    score: 6.2 bits;  conditional E-value: 0.00076
    TIGR01738  67 aiwlGWsLGGLvalhlalthpd.kvrsLvlvassp 100
                    ++G+s GGL+a+ + l  +   vr+ vl+a sp
  MMETSP1061-20121228|44405_1 107 DAVIGFSQGGLLATAMVLMGAFpTVRA-VLTAGSP 140
                  3579**********9998644302665.4555554 PP

  == domain 2    score: 7.7 bits;  conditional E-value: 0.00026
    TIGR01738 188 svPvLrlyGqkDalvPakvvealdklapqsellvleka 225
                  ++P L  +G+ D++vP  +v++l+      +l++ ek+
  MMETSP1061-20121228|44405_1 170 NIPKLHFAGETDNMVPVDSVQQLSDVGGSGRLIIHEKG 207
                  589********************998877777776665 PP

>> TIGR02427  protocat_pcaD: 3-oxoadipate enol-lactonase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.7   0.0     0.076   1.6e+02     176     213 ..      39      75 ..      25      93 .. 0.78
   2 ?    0.2   0.1     0.043        88      81      98 ..     107     124 ..      97     140 .. 0.77
   3 !    9.6   0.0   5.7e-05      0.12     193     237 ..     170     213 ..     160     225 .. 0.82

  Alignments for each domain:
  == domain 1    score: -0.7 bits;  conditional E-value: 0.076
    TIGR02427 176 tcaAirdadlrerleeiavPtlviaGdeDgstPpelvr 213
                    + + d+d+ ++  ei+  +  i Gd+ +s Pp +++
  MMETSP1061-20121228|44405_1  39 KLQRVYDLDFLDAPFEIKTFVESI-GDDQQSPPPRQLE 75 
                  556688999999999999988887.7888888888765 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.043
    TIGR02427  81 aavcGlSlGGliaqaLaa 98 
                   av+G S GGl+a a+ +
  MMETSP1061-20121228|44405_1 107 DAVIGFSQGGLLATAMVL 124
                  5799*******9987654 PP

  == domain 3    score: 9.6 bits;  conditional E-value: 5.7e-05
    TIGR02427 193 avPtlviaGdeDgstPpelvreiadlvpgarfaeieeaaHlpnle 237
                  ++P l  aG+ D   P ++v+++ d v g+    i+e +Hl + +
  MMETSP1061-20121228|44405_1 170 NIPKLHFAGETDNMVPVDSVQQLSD-VGGSGRLIIHEKGHLFPTK 213
                  68********************976.89999999999***97654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                      111  (0.02706); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1286.89
//
Query:       MMETSP1061-20121228|44415_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 347.34
//
Query:       MMETSP1061-20121228|44406_1  [L=853]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00073   17.1   0.3     0.0013   16.3   0.2    1.3  1  TIGR03789 pdsO: proteobacterial sortase system OmpA family protein
  ------ inclusion threshold ------
      0.032   12.5   0.2       0.08   11.3   0.2    1.7  1  TIGR03631 bact_S13: 30S ribosomal protein S13


Domain annotation for each model (and alignments):
>> TIGR03789  pdsO: proteobacterial sortase system OmpA family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.2   6.2e-07    0.0013      40      72 ..     354     386 ..     328     393 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 6.2e-07
    TIGR03789  40 dqealiGlgsGallGavVgGPvGaiiggitGgl 72 
                   ++++  +++Ga+ Ga+V+GP+Ga  g+  G +
  MMETSP1061-20121228|44406_1 354 LENKNSQIATGAAAGAMVAGPLGAAAGAAFGAF 386
                  455666689*******************99987 PP

>> TIGR03631  bact_S13: 30S ribosomal protein S13
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.2   3.9e-05      0.08      35      74 ..     313     352 ..     278     362 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 3.9e-05
    TIGR03631  35 agidedkkvkdlteeelekirevieeeykvegdlrrevsl 74 
                  +g ++++ ++dl+++  ++i+ev+e++yk eg+l+  ++ 
  MMETSP1061-20121228|44406_1 313 TGEAPEIDTQDLNDKISAAIKEVVEQDYKWEGELKMTTKP 352
                  455678899*************************987765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (853 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                      145  (0.0353486); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.41u 0.12s 00:00:00.53 Elapsed: 00:00:00.41
# Mc/sec: 2746.02
//
Query:       MMETSP1061-20121228|44412_1  [L=347]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (347 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.33
# Mc/sec: 1387.89
//
Query:       MMETSP1061-20121228|44425_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|44421_1  [L=1519]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   1.2e-221  736.6   4.2   9.6e-178  591.1   0.2    3.3  2  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   1.1e-118  395.4   8.4    1.5e-50  169.6   0.9    4.1  4  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
    1.2e-83  279.4   3.1    9.4e-29   98.0   0.1    4.1  4  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    1.4e-80  269.2   2.4      4e-31  106.0   0.1    4.1  4  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    2.1e-75  252.5   3.7    6.1e-32  109.1   0.0    4.3  4  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.6e-73  245.4   7.8    4.9e-27   92.6   0.5    4.1  4  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.3e-72  242.9   5.1    1.1e-26   91.1   0.0    4.1  4  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.6e-69  232.8   0.1    1.1e-24   84.8   0.0    4.1  4  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    6.9e-69  230.7   6.0    7.4e-27   91.7   0.2    4.0  4  TIGR00958 3a01208: antigen peptide transporter 2
    7.3e-68  227.3   4.4      4e-24   82.7   0.0    4.2  4  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
      2e-59  199.6  11.9    1.5e-23   81.0   0.0    4.5  4  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      7e-54  181.3   0.0    1.9e-18   64.2   0.0    3.1  3  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    2.2e-52  176.3   0.5    1.1e-18   65.0   0.0    3.9  4  TIGR01192 chvA: glucan exporter ATP-binding protein
    5.9e-52  174.7   9.9    4.3e-25   86.1   0.0    4.5  4  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.8e-34  117.0   0.0    3.4e-18   63.7   0.0    3.3  3  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    5.4e-34  115.5   0.2    6.2e-14   49.8   0.0    4.4  3  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    1.9e-33  113.7   0.7    2.5e-10   38.1   0.0    4.3  4  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    1.1e-32  111.4   0.0    8.3e-12   43.1   0.0    3.6  3  TIGR00960 3a0501s02: type II secretory pathway family protein
    3.1e-32  109.7   0.0    1.7e-13   48.4   0.0    3.3  3  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    2.2e-31  107.0   0.0    6.2e-12   43.5   0.0    3.5  3  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    2.7e-31  106.7   0.0    1.3e-15   55.4   0.0    3.2  3  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    3.9e-31  106.1   0.0      7e-12   43.1   0.0    3.3  3  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    1.2e-30  104.5   1.7    6.2e-18   62.8   0.4    3.8  2  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    2.7e-30  103.2   0.0    3.7e-14   50.5   0.0    3.5  3  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    9.9e-30  101.5   1.0    2.4e-11   41.0   0.0    4.1  4  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
      1e-29  101.7   0.2    6.5e-14   49.8   0.0    3.2  3  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    8.4e-29   98.5   0.0      3e-17   60.8   0.0    3.3  3  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    2.1e-28   97.2   0.2    1.3e-12   45.3   0.0    3.4  3  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    4.2e-28   96.3   2.8    5.3e-09   33.6   0.0    4.4  4  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    2.8e-27   93.6   1.5    3.1e-12   44.1   0.1    4.1  3  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    2.8e-26   90.1   0.4    5.3e-10   36.7   0.0    4.3  3  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    3.7e-26   90.0   0.4    2.4e-08   31.6   0.0    4.3  4  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    6.4e-26   89.0   0.2    1.4e-07   29.1   0.0    4.7  4  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    1.5e-24   84.6   0.0      1e-11   42.7   0.0    3.4  3  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    6.5e-24   82.4   0.1    7.3e-07   26.6   0.0    4.5  4  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    7.2e-24   82.4   0.5    1.9e-14   51.6   0.0    3.5  3  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
      1e-23   81.8   0.0    4.5e-05   20.8   0.0    4.3  4  TIGR01978 sufC: FeS assembly ATPase SufC
    1.5e-23   81.0   0.2    2.9e-11   40.3   0.0    3.5  3  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
    6.5e-23   79.0   0.1    4.5e-09   33.5   0.0    3.2  3  TIGR01288 nodI: nodulation ABC transporter NodI
    1.2e-22   78.4   1.8    1.9e-11   41.6   0.0    3.7  3  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.7e-22   77.6   0.0    3.3e-07   27.1   0.0    4.3  4  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    3.4e-22   76.6   0.0    2.2e-15   54.1   0.0    3.0  3  TIGR00955 3a01204: pigment precursor permease
    1.2e-21   75.3   3.3    5.3e-13   47.0   0.0    3.9  3  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    1.8e-20   70.8   0.2    2.6e-07   27.4   0.0    4.1  4  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    2.1e-20   71.2   0.0    8.8e-08   29.8   0.0    3.4  3  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    2.9e-20   70.4   0.3    4.7e-06   24.0   0.0    3.9  3  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    3.4e-20   70.5   0.0    1.6e-06   25.8   0.0    4.1  3  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    5.3e-20   69.6   0.4      1e-08   32.5   0.0    3.4  3  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.5e-18   65.0   2.7    1.6e-10   38.8   0.0    4.0  3  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    9.2e-18   61.8   0.0    3.2e-06   23.7   0.0    3.3  3  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    1.3e-17   62.0   0.0    1.7e-05   22.4   0.0    3.8  3  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.2e-15   55.1   3.9    3.8e-09   33.8   0.1    4.1  3  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
      1e-12   45.9   0.2      0.011   13.1   0.0    4.4  4  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.3e-09   34.1   0.0    0.00072   15.1   0.0    3.2  3  TIGR00956 3a01205: pleiotropic drug resistance family protein
    4.7e-08   29.8   7.8     0.0075   12.7   4.6    4.6  4  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
    1.1e-07   28.3   0.7      0.024   10.6   0.0    3.9  4  TIGR00630 uvra: excinuclease ABC subunit A
     0.0014   14.4   0.1      0.056    9.1   0.0    2.3  2  TIGR00618 sbcc: exonuclease SbcC
     0.0022   15.5   0.2      0.012   13.1   0.0    2.1  2  TIGR03263 guanyl_kin: guanylate kinase
     0.0048   14.5   0.4        1.4    6.5   0.0    2.4  2  TIGR00231 small_GTP: small GTP-binding protein domain
  ------ inclusion threshold ------
      0.013   12.5   1.0       0.37    7.7   0.0    2.9  3  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
      0.014   12.2   0.3       0.36    7.5   0.0    2.4  2  TIGR02525 plasmid_TraJ: plasmid transfer ATPase TraJ


Domain annotation for each model (and alignments):
>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  143.1   0.3   2.1e-44   1.4e-42     288     616 ..     152     485 ..     121     522 .. 0.90
   2 !  591.1   0.2  1.4e-179  9.6e-178     649    1517 ..     579    1493 ..     555    1498 .. 0.85

  Alignments for each domain:
  == domain 1    score: 143.1 bits;  conditional E-value: 2.1e-44
    TIGR00957 288 neeveallvkspqkerkpsllkvlyktfgsyfllsflfkaiqdllsfagpkllellikfvndrkapdw..qgylytallfvsallqtlvlqqyfhiifvsgvriktavvgavyrkalvitnsarksstvgeivnlmsvdaqrfmdlatylnllwsaplqvilalyllwlnlgpsvlagvavmvllvplnavvavktktyqvaqmkskdnriklmneilngikvlklyawelafkdkvlairqeelkvlkksaylaavgtftwvctpflvalitlavyvtv...dennildakkafvslalfnilrlplnilpmvisslvqasvslkrlriflsq 616
                  +++ +a+ +++ + + k  l+k+l+k   + f+ + +  +   +l+ + p +++ ++  ++ +   +   +g  ++ ll   + ++ l+ q+y h  + +g+ +++a+v +vy++ l ++   +   t gei nl++vdaq++ +++    l+w+ p+++il  ++l l +gp+ l gv  ++ ++pl   v  ++   + ++++  d+r+ +   +l g++  kl  +e  ++++v+  r+eelk l k     a++    v +p l    ++  yv     +  ++l a  +f  l lf  lr+p+ +  ++i + +qa  s+ r+  fl +
  MMETSP1061-20121228|44421_1 152 QNDRKAVTAATTRSQTKRQLIKALWKIATPTFIPAGICELGSTILVSIMPLVVRRFLYVIELESEENImgKGLTWALLLTTMTFVDGLLKQRYRHQSMKTGIALRSAIVNMVYKHVLRMSPQGKIGLTSGEINNLVAVDAQKLYEITQEAHLIWALPINIILVTWFLCLIMGPTTLVGVVALIGFLPLIKLVLKQMAKVRSNRVRCSDQRVEIACSMLMGMRTTKLNGYESKYQERVQEARDEELKWLAKEQAWWATTLVITVSSPVLAMAFAFSAYVLSstpESPKVLTAADTFGVLLLFGALRFPISFAGRLIGNAAQALSSIERICEFLER 485
                  445567777778889999********************************999988777765555554116677777777788899***********************************************************************************************************9****************************************************9988877778888888*******9999*9999652225678********************************************986 PP

  == domain 2    score: 591.1 bits;  conditional E-value: 1.4e-179
    TIGR00957  649 depp.tlngltlsipegalvavvgqvgcgkssllsallaemdkvegkval................kgsvayvpqqawiqndslrenilfgkaleekyykavleacalladleilpsgdrteigekgvnlsggqkqrvslaravysd..adiyllddplsavdahvakhifekvi.gpkgllknktrilvthgisylpq..vdviivlsdgkisemgsyqelldrdgafaeflrtyasaedeldaeddgvasvsaedkeaklvedgllvtdvvgkqlqrqlsasssdsedtsrhlsssaelqkaeakeetwklmeadkaqigqvklsvywdyak.aiglfitllsillflcnsvsalasnywlslwtdda...v..........vdgtqentklrlsvyaalgilqgiavlgysmavsiggilasrvlhldllhnvlrspmsffertpsgnlvnrfskeldvvdsvlaevikmllgslfnvigavivillatplaaviilplallyflvqrfyvassrqlkrlesvsrspvyshfnetllgvsvirafeeqerfiiqsdlkvdenqkayypsivanrwlavrlelvgncivlfaalfavisrssl..saglvglsvsyslqvtaylnwlvrmsseletnivaverlkeysetekeapwqie.etappsswpksgrvefrnyslryredldlvlrdlnvtieggekvgivgrtgagkssltlglfrinesaegeiiidglniakiglhdlrfk.ltiipqdpvlfsgslrmnldpfsqysdeevwlalelahl.......kdfv..........salp......dkldfecaeggenlsvgqrqlvclarallrktkilvldeataavdletdnliqstirtqfedctvltiahrlntimdytrvlvldkgevaefdapsellqq..rgifysma 1517
                   ++p  t+ ++++++ +g ++ v g+vg gks+ll  +l e + +e k+++                +g ++y pq+ +i n slreni+fg ++++ +y+ vl+acal +d++ l + d  +ige+gv lsggq+qrvslara y +  +   +lddp+sa+d+  +k +fe++i gp  llk+ + +lvth+  ++    vd ++++ +g+   +gs++el + +            +e+ + a d+  +++  +  e+ +        d  g +l  +  ++ s++++ s+ ++s +++  + +  +t k+m+++  + g      +  + k a g   +  +i+l + ++ + +a +++++ wt  a   v          +dg  ++ k  l v+a+  +l  +     s  +  gg+ a++++  ++l +vl++pms+fe+ p g+++nrf+ + dv d  l++ i m++ s+   ++ ++v ++  p +a  + p++++y++   +y  +  +l+r++++srsp+ s  +e l g + ir f+++ rfi + +  vd n  a   +i  +rwl+ r+e++g  +v++++++ v   + l  sagl gl + +s + t+ ln+lv   se e+ i a+er+   +e   eap   + + +pps+wp +g +efrn slryr +l l l+dl+ +i  g+  givgrtgagkss+t++lfr+ e   g i +d ++++ +gl d+r + ++iipqdp l    +r  ldpf q +d+e+  al+   +       ++             + p      + l  +  egg n+svg+rql+ larall + k+lvldeata++d etd +iq  +rt+f + t++tiahrlntimdy  vlv+d g  aefdap++ll++   gif  + 
  MMETSP1061-20121228|44421_1  579 ENPSfTVGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMsslplpketvppmvekNGRISYAPQDPFILNLSLRENIVFGSDFDPVRYNRVLDACALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQplSSCIILDDPFSALDSGTGKLVFEQLIaGPDALLKESAVLLVTHASHFISHraVDKVLLMVNGRNEFLGSWEELTQLNDE--------EHDEQTRRAVDHIQSQIRENTDESNK--------DGNGDKLAER-DSVGSYTNNESKGRNSQHQVADSSSS-KTNKIMQKELREHGLSSAKTWLLWFKyAGGPWFACTIIVLLIIDRFAYVAVEWFVAEWTSGAyepVtflgvefpaqIDGLHAQAK-YLIVFASTILLSVLCTACRSEFIVTGGVRATKTVFESMLASVLKAPMSYFETVPMGRILNRFTYDTDVNDVTLTQQISMFMISISWYVAGIVVQIAIIPWMAFTLFPVTVMYLIFLHYYRLTGPDLQRIDALSRSPMQSMVSECLEGSTSIRIFHQDLRFIEKFQQIVDVNSSALLNYISVQRWLSCRMEVLGCVVVMLTSILLVCLHEQLqtSAGLAGLLIIWSANFTITLNFLVITFSETEAAITAIERVDAMAELPSEAPLETRkGYQPPSNWPVQGLLEFRNVSLRYRTELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRGRgMSIIPQDPFLAGANVRECLDPFEQRTDDEILEALDSVRMgpngyngNGNStanddggdtgDSAPtptsakALLSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLADgnEGIFSQLV 1493
                   455338899***********************************99877644444433333333335899***************************************************************************98557899*******************98769****************99997433999******************986654........44555555555544444444444443........3334444433.45678888889988988888777665.7999****99999987777666555526678889999999999****************97622232222111111233333322.3566766666666666777888999****************************************************************************************************************************************************************************999998888777663489************************************************99862679*************************************************************************************8769*********************************98766332222211111111111111122211221144788999*******************************************************************************************853378987765 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.7   1.6   6.6e-16   4.4e-14      64     377 ..     165     484 ..     142     497 .. 0.84
   2 !  125.0   0.0   6.4e-39   4.3e-37     444     638 ..     587     804 ..     557     827 .. 0.83
   3 !  169.6   0.9   2.2e-52   1.5e-50     944    1330 ..     971    1349 ..     944    1354 .. 0.88
   4 !   51.2   0.0   1.2e-16   7.9e-15    1343    1442 ..    1385    1484 ..    1379    1508 .. 0.92

  Alignments for each domain:
  == domain 1    score: 48.7 bits;  conditional E-value: 6.6e-16
    TIGR01271  64 akkkpkllnalrrcflwrflfygillylgevtkavqplllgriiasydaknaee.reiayylalglsllfivrtlllhpaifglhhlgmqlrialfsliykktlklssrvldkistgqlvsllsnnlnkldeglalahfvwiaplqvvllvgliwelleasafcglgfli.llalvqallgkkmmkyrdkragkiserlaitseiieniqsvkaycweeamekiienirqvelkltrkvayvryfsssafffsgllvvvlsvvpyalikgiilrrifttisycivlrmtvtrqlpsa.....iqtwydslgairkiedflq 377
                  ++ k +l++al +     f+  gi    + +  ++ pl++ r +   + + +e+   +++  al l+ +  v  ll +       + g+ lr a+  ++yk++l++s +    +  g++  l++ + +kl e    ah++w  p++++l+  ++  ++  +++ g+ +li +l l++ +l k+m+k r +r    ++r+ i+  ++  +++ k  ++e   ++ +++ r++elk   k       +      s +l +  +   y l+ +    +++t++    vl +  + ++p +     i    ++l+ i++i +fl+
  MMETSP1061-20121228|44421_1 165 SQTKRQLIKALWKIATPTFIPAGICELGSTILVSIMPLVVRRFLYVIELESEENiMGKGLTWALLLTTMTFVDGLLKQRYRHQSMKTGIALRSAIVNMVYKHVLRMSPQGKIGLTSGEINNLVAVDAQKLYEITQEAHLIWALPINIILVTWFLCLIMGPTTLVGVVALIgFLPLIKLVL-KQMAKVRSNRVRCSDQRVEIACSMLMGMRTTKLNGYESKYQERVQEARDEELKWLAKEQAWWATTLVITVSSPVLAMAFAFSAYVLSSTPESPKVLTAADTFGVLLLFGALRFPISfagrlIGNAAQALSSIERICEFLE 484
                  566789******************999999999*********99988876554414567778888888899999999999999999***********************99999************************************999999999999999988874778888777.7799*************************************************888876665555566667788888888899999999999999988876666666666667765222223445567777777777775 PP

  == domain 2    score: 125.0 bits;  conditional E-value: 6.4e-39
    TIGR01271 444 nislklekgqllavagstgsgkssllmmilgelepsegk................ikhsgrisfspqvswimpgtikdniifglsydeyrytsvikacqleediallaekdktvlgeggitlsggqrarislaravykd..adlylldspfsyldvvtekeifesclc...kllanktrilvt..sklehlkkadkilllhegscyfygtfselqakk 638
                    +++l kg+++ v+g  gsgks+ll  il e e  e k                + + gris++pq ++i+  ++++ni+fg  +d  ry+ v++ac l  di +l   d + +ge g+tlsggqr r+slara yk+  +   +ld pfs ld  t k +fe+ +     ll + + +lvt  s++   +  dk+ll+ +g   f g++ el + +
  MMETSP1061-20121228|44421_1 587 SFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKlsmsslplpketvppmVEKNGRISYAPQDPFILNLSLRENIVFGSDFDPVRYNRVLDACALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQplSSCIILDDPFSALDSGTGKLVFEQLIAgpdALLKESAVLLVThaSHFISHRAVDKVLLMVNGRNEFLGSWEELTQLN 804
                  57899***************************998877722222222222222224567*******************************************************************************9556889********************99844458888888999833344444678*******************97654 PP

  == domain 3    score: 169.6 bits;  conditional E-value: 2.2e-52
    TIGR01271  944 lrglplvhtlltvskrlhkkmlhsvlqapmavlntlkagrilnrfskdiaiiddllpltlfdl.iqlllivlgaiavvsvlqpyilvaaipvavifivlrayflrtsqqlkqlesearspifshliislkglwtvrafgrqsyfetlfhkalnlhtanwflylstlrwfqlridii..fvlffiavvfiaiatn.degegevgiiltlamnilstlqwavnssidvdglmrsvsrvfkfidlpqeeskpkkstkkyqlskvlvienkhvkkiwpsggqmtvkdltakyteagravlqdlsfsveagqrvgllgrtgsgkstllsallrllste.geiqidgvswnsvtlqkwr.kafgvipqkvfilsgtfrknldpyeqysdeeiwkvaeev 1330
                    r   +v   +  +k++ + ml svl+apm+ ++t+  grilnrf+ d+ + d  l   +  + i +   v g ++ +++  p++  +  pv+v+++++  y+  t+ +l+++++ +rsp+ s +   l g  ++r f ++  f   f + +++ ++  + y+s  rw+  r++++   v++++++ ++++  + +   g  g+++  + n + tl++ v++  + ++ + +++rv  + +lp+e +   ++ k yq+              wp +g ++ ++++ +y  +    l+dlsf + ag++ g++grtg+gks++  al+rl++ e g i +d v   ++ l + r + + +ipq  f+     r  ldp+eq +d+ei    + v
  MMETSP1061-20121228|44421_1  971 CRSEFIVTGGVRATKTVFESMLASVLKAPMSYFETVPMGRILNRFTYDTDVNDVTLTQQISMFmISISWYVAGIVVQIAI-IPWMAFTLFPVTVMYLIFLHYYRLTGPDLQRIDALSRSPMQSMVSECLEGSTSIRIFHQDLRFIEKFQQIVDVNSSALLNYISVQRWLSCRMEVLgcVVVMLTSILLVCLHEQlQTSAGLAGLLIIWSANFTITLNFLVITFSETEAAITAIERVDAMAELPSEAP--LETRKGYQPP-----------SNWPVQGLLEFRNVSLRYRTELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIEsGSILLDNVDLTTLGLSDVRgRGMSIIPQDPFLAGANVRECLDPFEQRTDDEILEALDSV 1349
                   56666777888999***************************************999988877615555666666666665.599999***************************************************************************************9743455566666666654436788999*******************************************55..4444555553...........46**********************************************************987599**************9995789*****************************9887776 PP

  == domain 4    score: 51.2 bits;  conditional E-value: 1.2e-16
    TIGR01271 1343 ldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafsnctvilsehrveallecqqflviegssvkqydsiqkllnea 1442
                   l  +l++gg  +s g +ql+ lar++ls+ k+l+lde +a +d  t   i+k l+  f n t++   hr++++++ +  lv++  +  ++d+  kll++ 
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLADG 1484
                   56789********************************************************************************************864 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.4   8.8e-07   5.9e-05     199     448 ..     234     487 ..     225     533 .. 0.73
   2 !   93.9   0.0   2.4e-29   1.6e-27     457     679 ..     558     791 ..     545     807 .. 0.84
   3 !   98.0   0.1   1.4e-30   9.4e-29     200     578 ..     963    1347 ..     954    1354 .. 0.74
   4 !   65.2   0.0   1.2e-20   8.1e-19     593     680 ..    1385    1472 ..    1378    1487 .. 0.92

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 8.8e-07
    TIGR03375 199 lvfdlvlkllRsylldvagkkvdlilsaklfervlglrlearpasvGsfasqlrefesvrdfltsatltalvDLpfvllfll.vialiggplvlvplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyli.....aegeltmGgLiAaviLsgRalaPlaqlaglltryqqaktalesldelmklpv 448
                  +++d +lk+   +    +g  +   + ++++++vl+++ + +   + + +++l   +  + +   +    +  Lp+ +++++  + li gp  lv +va++  l +  l+ k+++k+ ++ +r s q+  + +  l g+ t k+++ es+ q++ +++  +  k+ +k +++ a++  ++      v  +   + +y++     + + lt      + +L g    P++    l+    qa +++e++ e++++p 
  MMETSP1061-20121228|44421_1 234 TFVDGLLKQRYRHQSMKTGIALRSAIVNMVYKHVLRMSPQGKIGLTSGEINNLVAVDAQKLYEITQEAHLIWALPINIILVTwFLCLIMGPTTLVGVVALIGFLPLIKLVLKQMAKVRSNRVRCSDQRVEIACSMLMGMRTTKLNGYESKYQERVQEARDEELKWLAKEQAWWATTLVITVSSP--VLAMAFAFSAYVLsstpeSPKVLTAADTFGVLLLFGALRFPISFAGRLIGNAAQALSSIERICEFLERPL 487
                  566777777666666677778888899999************99999999999998887777667777788889998877752678899999999999999888888888899***********************************************999999999988665544433222..2222223333333222224445555556666666666666666666666666666666666666666664 PP

  == domain 2    score: 93.9 bits;  conditional E-value: 2.4e-29
    TIGR03375 457 lsreklkGeielk.nvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdi..rqidp.adlrrnigyvpqdvtLfyGtlrdNialgapaaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdp..pillLDEPtsalDnsseekllerL....kelladkTlvlvtHrtslLe..lvdriivldkGri 679
                  +s e+++ +++ + n++   +e+ + ++ +  ++++ Ge + + G +GsGKstll+ +l   e+ e ++++  + +  +++ p ++   +i+y pqd+ +++ +lr+Ni++g+  ++  +  r++++  +   +k+   +   qigerG  LSgGQrq v+laRa +k+p  + ++LD+P salD+ + + ++e+L     +ll++  ++lvtH +++++   vd+++++ +Gr 
  MMETSP1061-20121228|44421_1 558 VSSESVNKNMQTDdNIENGNRENPSFTVGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLpkETVPPmVEKNGRISYAPQDPFILNLSLRENIVFGSD-FDPVRYNRVLDACALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLiagpDALLKESAVLLVTHASHFIShrAVDKVLLMVNGRN 791
                  555555555555314555556667777888999***************************************998732344441455668**********************98.8999999***************999999**************************96679****************999999544456899*************96337**********95 PP

  == domain 3    score: 98.0 bits;  conditional E-value: 1.4e-30
    TIGR03375  200 vfdlvlkllRsylldvagkkvdlilsaklfervlglrlea.rpasvGsfasqlrefesvrdf.ltsatltalvDLpfvllfllvialiggplvl..vplvavplvllvglllqkplsklaeeslresaqknallveslegletikalnaesrlqkkWeqvvaalakvslklrllsalltnlaalvqqlvsvavvvvGvyli..aegeltmGgLiAaviL.sgRalaPlaqlaglltryqqaktalesldelmklpvereeekrl....lsreklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKstllklllglyepteGsvlldgvdirqidpadlr.rnigyvpqdvtLfyGtlrdNialgapaaedeellraae 578 
                   ++ ++    Rs ++ + g ++  ++ +++++ vl+  ++  +   +G + +++     v d  lt +  + ++ + + +  ++v + i +++++   p++++ l++l  + l  p  +l +  +   +  ++++ e leg  +i++ +   r+ +k++q+v   +++ l+  +++  l+   +++  +v   v++  + l+   e+  t  gL    i+ s+     l+ l   ++  + a ta+e++d + +lp+e + e+r      s+  ++G +e++nvs++Y+ e   aL+++s+ki +G   +i+Gr+G+GKs+++  l +l+e ++Gs+lld+vd++++  +d+r r ++++pqd+ L  +++r+ +   ++  +d+e+l+a++
  MMETSP1061-20121228|44421_1  963 LLSVLCTACRSEFIVTGGVRATKTVFESMLASVLKAPMSYfETVPMGRILNRFTYDTDVNDVtLTQQISMFMISISWYVAGIVVQIAIIPWMAFtlFPVTVMYLIFLHYYRLTGP--DLQRIDALSRSPMQSMVSECLEGSTSIRIFHQDLRFIEKFQQIVDVNSSALLNYISVQRWLSCRMEVLGCVV---VMLTSILLVclHEQLQTSAGLAGLLIIwSANFTITLNFLVITFSETEAAITAIERVDAMAELPSEAPLETRKgyqpPSNWPVQGLLEFRNVSLRYRTELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRgRGMSIIPQDPFLAGANVRECLDPFEQR-TDDEILEALD 1347
                   5566667788888888888888888888888888888886355678888888887778888634555555667777777666665555555544113444444444433333333..333333334456689****************************99888776665555544443333333222...2222222222144555666677766552667778899999999999999*************99988776651111455579******************************************************************************678********************99885.6677888886 PP

  == domain 4    score: 65.2 bits;  conditional E-value: 1.2e-20
    TIGR03375  593 ldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkelladkTlvlvtHrtslLelvdriivldkGriv 680 
                   l ++++e+G+++S G rq++ laRall++p++l+LDE t+++D ++++ + + L++   ++Tlv ++Hr + +   d ++v+d Gr  
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRLNTIMDYDCVLVMDAGRAA 1472
                   567899*******************************************************************************965 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   2.4e-05    0.0016     127     320 ..     288     492 ..     271     501 .. 0.81
   2 !   72.3   0.0   9.5e-23   6.4e-21     346     555 ..     582     800 ..     547     806 .. 0.87
   3 !  106.0   0.1   5.9e-33     4e-31      76     423 ..     973    1327 ..     942    1350 .. 0.78
   4 !   72.7   0.0   6.8e-23   4.6e-21     460     565 ..    1385    1492 ..    1380    1496 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 2.4e-05
    TIGR02203 127 saatdvlkvlvretltvigllivllylsWqltliv.....vvllPvlal..lvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalk..vasasslssplvqliasvalavvllialv.qaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDspp.ekde 320
                   + ++ l  +++e+  + +l i ++ + W l li+     v ++ ++++  l++ v k++ k+ ++ ++   +  +++  +l g r  kl g + + ++R +++ ++ ++   k     a++l  +++  + ++a+a+  ++ ++   + + lt+ +  +++    al  p+     +  +  + l + e+++++l++p  e+d+
  MMETSP1061-20121228|44421_1 288 AVDAQKLYEITQEAHLIWALPINIILVTWFLCLIMgpttlVGVVALIGFlpLIKLVLKQMAKVRSNRVRCSDQRVEIACSMLMGMRTTKLNGYESKYQERVQEARDEELKWLAKeqAWWATTLVITVSSPVLAMAFAFSAYVLSStPESPKVLTAADTFGVLLLFGALRFPISFAGRLIGNAAQALSSIERICEFLERPLrENDN 492
                  4455566778999999*****************9866332445555555335899***********************************99999999**99998776665444114458888888888899999999888766515566789*******************************************998514444 PP

  == domain 2    score: 72.3 bits;  conditional E-value: 9.5e-23
    TIGR02203 346 realdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasL...RrqvalvsqdvvLFddtiaenvaYgeleevdeaeveealaaaylkdlvdklpeGldtevGengskLsGGqRqRlaiaRallkd..aPiLiLDeatsaLDneseRlvqaaL....erlmkgRttlviahRLstiek..aDrivvlddGkiverGtheeL 555
                    ++ s+++++++Ge++ + G+ GsGkstl+n +    e  + ++ +   +l + ++  +     ++++  qd ++ + ++ en+ +g+    d  + +++l a  l+  + +l      ++Ge+g+ LsGGqRqR+++aRa +k+  +  +iLD+  saLD+   +lv + L    ++l+k+   l++ h    i +   D+++ + +G+    G+ eeL
  MMETSP1061-20121228|44421_1 582 SFTVGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMvekNGRISYAPQDPFILNLSLRENIVFGSD--FDPVRYNRVLDACALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQplSSCIILDDPFSALDSGTGKLVFEQLiagpDALLKESAVLLVTHASHFISHraVDKVLLMVNGRNEFLGSWEEL 800
                  557889**********************************************9998876611145799999*****************87..888888999999999999***9988889*************************866689****************998887667799************9988875337******99996666666665 PP

  == domain 3    score: 106.0 bits;  conditional E-value: 5.9e-33
    TIGR02203   76 dyllakvsnkvvrdlRkklfeklltlpsayfdkessgsllsrltfdseqvvsaat.dvlkvlvretltvigllivllylsWq.ltlivvvllP.vlallvrvvskrlrkiskeiqnsigeltkvveealqgyrvvklfggqeaeakRfdavsnrlrrlalkvasasslssplvqlias..valavvllialvqaqagaltvGelvafitamlalikplksLtnvsaklqkglaaaesvfallDspp....ekdeGtraler..vrGkvefrnvtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllpRFyepdsGeillDgvdladlkLasLR.rqvalvsqdvvLFddti 423 
                   + ++    ++  +++ +++++ +l++p +yf+  + g++l+r+t+d++    ++t ++ + ++  +  v g+++ +  + W  +tl  v ++  +     r +   l++i      s + ++++v+e l+g   +++f  +    ++f+++ + + +  l   s +   s  +++++   v l+ +ll+ l+++ + +     l  + +  + ++ +l  L    ++    ++a e+v a+ + p+    e+ +G + + +  v+G +efrnv+ ry+ +   al+++s+k+ aG+   +vGr G+Gks++   l R +e++sG+illD+vdl  l L+++R r ++++ qd +L    +
  MMETSP1061-20121228|44421_1  973 SEFIVTGGVRATKTVFESMLASVLKAPMSYFETVPMGRILNRFTYDTDVNDVTLTqQISMFMISISWYVAGIVVQIAIIPWMaFTLFPVTVMYlIFLHYYRLTGPDLQRIDA---LSRSPMQSMVSECLEGSTSIRIFHQDLRFIEKFQQIVDVNSSALLNYISVQRWLSCRMEVLGCvvVMLTSILLVCLHEQLQTSAGLAGLLIIWS--ANFTITLNFLVITFSETEAAITAIERVDAMAELPSeaplETRKGYQPPSNwpVQGLLEFRNVSLRYRTELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRgRGMSIIPQDPFLAGANV 1327
                   445555556667778899***************************9986554444055567888888898888888888884255554444430334445555556666654...4556788899************************************999999999999997651156788888888888776655555554444..4555567777777788889999999998877654411126789999988888*******************************************************************************556999999988866555 PP

  == domain 4    score: 72.7 bits;  conditional E-value: 6.8e-23
    TIGR02203  460 ldtevGengskLsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlviahRLstiekaDrivvlddGkiverGtheeLla..rnGlYasL 565 
                   l t++ e gs+ s G Rq l +aRall +  +L+LDeat+++D e +  +q+ L     + t + iahRL ti + D ++v+d+G+  e  +  +Lla  ++G++++L
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLAdgNEGIFSQL 1492
                   56888899****************************************************99999************************9999999983346777776 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.4    0.0054      0.36      40     214 ..     220     393 ..     182     397 .. 0.76
   2 !  109.1   0.0   9.1e-34   6.1e-32     336     527 ..     583     784 ..     544     786 .. 0.85
   3 !   72.2   0.0   1.3e-22   8.8e-21      41     435 ..     943    1349 ..     901    1369 .. 0.80
   4 !   61.0   0.0   3.2e-19   2.2e-17     445     529 .]    1382    1466 ..    1374    1466 .. 0.95

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0054
    TIGR02857  40 laelltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfar...ylpqlvlavivplvilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikrise 214
                  + + lt++++l  ++++  ll+    + + + + + +s++ + + ++v++++p+   +  sge+  l++   ++l +  +    +    ++ ++v++ + +++ +  ++  + l+  lPli     L+ ++ +++  ++ +  ++  +    ++ g+ t kl g +++ +++++++ +
  MMETSP1061-20121228|44421_1 220 MGKGLTWALLLTTMTFVDGLLKQRYRHQSMKTGIALRSAIVNMVYKHVLRMSPQGKIGLTSGEINNLVAVDAQKLYEITQEahlIWALPINIILVTWFLCLIMGPTTLVGVVALIGFLPLIK----LVLKQMAKVRSNRVRCSDQRVEIACSMLMGMRTTKLNGYESKYQERVQEARD 393
                  44556778999999999999999999*****************************************9988888877665421133444667777888888888888888888888888875....6677777777777777777777777888888888888888888887777655 PP

  == domain 2    score: 109.1 bits;  conditional E-value: 9.1e-34
    TIGR02857 336 palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldad...swrkqiawvpQkPllfegtvaenirlarkdaseaevkealeragldelvkalpqgleteiGergagLSgGqrqRlaLArallrda..pllllDEPtahLDaeteaevleal....relaegrtvllvaHrlala..eladkiv 527
                    + +++++++ ge+++++G+ G+GKstll+ +l  +e+ e ++++ + +l + +     + + +i++ pQ P++++ +++eni +++ d +    +++l++++l   +k+l+     +iGerg  LSgGqrqR++LAra +++   + ++lD P ++LD+ t + v e+l    ++l+++ +vllv+H  + +  +++dk++
  MMETSP1061-20121228|44421_1 583 FTVGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPpmvEKNGRISYAPQDPFILNLSLRENIVFGS-DFDPVRYNRVLDACALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLiagpDALLKESAVLLVTHASHFIshRAVDKVL 784
                  46899*****************************************9998876554422355778********************996.567777*****************988889**************************999********************999955556799***********9976214566665 PP

  == domain 3    score: 72.2 bits;  conditional E-value: 1.3e-22
    TIGR02857   41 a......elltalaalalvlllRallawlkeaaaaraaaevksqlrerllekvaalGpavlqkkksgelatlllegvdalddYfarylpqlvlav.ivplvilaavltadwisalillltlPlipiFmiLiGsaaqaaarkqlaalsrLsghfldlvrglptLklfgrakaeaaaikriseeyrerTmevLriAfLSslvLellatlsvAlvAVyiGlrllagkldlaegLlvLlLa..PevylPlRqlgaqyHakaegvaaaealvevld.aeeqpeaekapltaaass....slelenvsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllgfvepteGailvngaelaeldadswrkq.iawvpQkPllfegtvaenirlarkdaseaevkealera 435 
                   a      + +  l ++a  +ll  l + ++     ++++++++++ e++l+ v++   ++ ++ + g++    +  +d  d  +++ +   + ++    + i++ ++ + w++  +  +t+ +  iF+        + +r    + s + + + + ++g + +++f++  + +++ ++i +   ++ ++ + +    s  +e+l  + v l  +   l  l+ +l+ ++gL  Ll+    ++  +l  l   + +++++++a+e + ++ +  +e+p++ ++  +  +++     le++nvs++y+ +   al+++s+++++g+  ++vG  GaGKs++  +l ++ve ++G+il+++++l+ l  ++ r + ++ +pQ P+l  + v+e +   ++  ++ e+ eal+ +
  MMETSP1061-20121228|44421_1  943 AqidglhAQAKYLIVFASTILLSVLCTACRSEFIVTGGVRATKTVFESMLASVLKAPMSYFETVPMGRILNRFTYDTDVNDVTLTQQISMFMISIsWYVAGIVVQIAIIPWMAFTLFPVTV-MYLIFLHYYRLTGPDLQRIDALSRSPMQSMVSECLEGSTSIRIFHQDLRFIEKFQQIVDVNSSALLNYISVQRWLSCRMEVLGCVVVMLTSIL--LVCLHEQLQTSAGLAGLLIIwsANFTITLNFLVITFSETEAAITAIERVDAMAElPSEAPLETRKGYQPPSNWpvqgLLEFRNVSLRYRTELpLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRGRgMSIIPQDPFLAGANVRECLDPFEQRTDD-EILEALDSV 1349
                   0444333445557788888888889999999999999999999999999999999999999999999999999999999998888777665554404445588889999999988888888.4455555555555555555555556677889999*************************************98778899*****999998765..688999********98776522678889**************************988888888888888887789999**********888769****************************************************9988877666***************9999876665554.477777766 PP

  == domain 4    score: 61.0 bits;  conditional E-value: 3.2e-19
    TIGR02857  445 pqgleteiGergagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrelaegrtvllvaHrlalaeladkivvl 529 
                   ++ l t++ e+g++ S+G+rq l LArall++ ++l+lDE ta++D et+a +++ lr  + + t++ +aHrl+++ ++d ++v+
  MMETSP1061-20121228|44421_1 1382 KALLSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRLNTIMDYDCVLVM 1466
                   556899**************************************************************************99876 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.1   0.7   0.00072     0.049      84     316 ..     250     484 ..     186     506 .. 0.68
   2 !   73.0   0.0   6.3e-23   4.3e-21     355     563 ..     584     802 ..     554     806 .. 0.83
   3 !   92.6   0.5   7.3e-29   4.9e-27      58     434 ..     952    1331 ..     938    1350 .. 0.82
   4 !   70.0   0.0   5.1e-22   3.4e-20     467     565 ..    1386    1484 ..    1382    1494 .. 0.93

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00072
    TIGR02204  84 slGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvG.aslsialrnlllliGalamlvitsvkltslvlla..vPlvllPillfgrrvrklsresqdrladasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliavvivlvfgavvlvlWvGardvlagk......l.saGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellk 316
                  + G  + + + + v++h+l++sp       sge+   ++ d++ l ++   a l  al   ++l+  ++ l++  + l ++v l+  +Pl+ l +  ++ +vr+  ++  d+  +    a  +l  ++t +  + e++ ++r ++a ++ ++  +   k++a+  ++ ++ v + v ++ ++ +  vl+ +      l +a +++ ++l+  l    ++  + ++g+  +a  ++er++e+l+
  MMETSP1061-20121228|44421_1 250 KTGIALRSAIVNMVYKHVLRMSPQGKIGLTSGEINNLVAVDAQKLYEITQeAHLIWALPINIILVTWFLCLIMGPTTLVGVVALIgfLPLIKLVLKQMA-KVRSNRVRCSDQRVE---IACSMLMGMRTTKLNGYESKYQERVQEARDEELKWLA---KEQAWWATTLVITVSSPVLAMAFAFSAYVLSSTpespkvLtAADTFGVLLLFGALR-FPISFAGRLIGNAAQALSSIERICEFLE 484
                  4566667778899********************************99986267888***99*****999999999999999877544888877666665.566666666665444...4556677778776666655555555544444443322...23344333333334444445554444444443211111121334455555555543.4567778899999999999999999886 PP

  == domain 2    score: 73.0 bits;  conditional E-value: 6.3e-23
    TIGR02204 355 aldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlre.ldpeelre..rlalvpqdsalfaasvleniryGrp.das.deeveaaakaaeadefisklpeGydtllGergvtLsGGqkqriaiarailkda..piLLLdeatsaLdaeseqlvqqal....eelmkgrttlviahrLatvlk..adrivvldkGriveqGthaeLia 563
                  ++  +d+++r+Ge + + GP G+Gkstll+ +l   +  + ++++  ++l + + p  + +  r++  pqd+ ++  s +eni +G   d    ++v +a+        i++l      ++GergvtLsGGq+qr+++ara  k+     ++Ld+  saLd+ + +lv + l    ++l k+ + l++ h    + +   d+++ + +Gr    G+ +eL +
  MMETSP1061-20121228|44421_1 584 TVGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKeTVPPMVEKngRISYAPQDPFILNLSLRENIVFGSDfDPVrYNRVLDAC---ALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLiagpDALLKESAVLLVTHASHFISHraVDKVLLMVNGRNEFLGSWEELTQ 802
                  56789********************************************9651445444332389*********************732333034555555...456679***999999************************99533789**************9997766566689************8777754338**********988899888876 PP

  == domain 3    score: 92.6 bits;  conditional E-value: 7.3e-29
    TIGR02204   58 neafalllvvvlvlalatalrfylvsslGervvadlrkavfahllelspaffdknrsgevlsrltadttllksvvGaslsialrnlllliGalamlvitsvkltslvllavPlvllPillfgrrvrklsresqdrla..dasayagealeaiktvqayaseeaersrfdaavekayeaarkrikaralliav..vivlvfgavvlvlWvGardvlagklsaGeLaqfvlyavlvagslgalsevlgelqraaGaaerliellkaksdikaPaqpk.alp..akvrgeiefeevkfayParpdqkaldgldltvrpGetvalvGPsGaGkstllelllrfydPqsGailldGvdlreldpeelrer.lalvpqdsalfaasvleni 434 
                    +++ ++   +l+  l ta+r  ++++ G r    + +++ a +l+   ++f+++  g +l r+t dt      +   +s+ + ++   + ++++ +++ + ++ + l  v ++   i+l   r+     +  d l+   +++ ++e le    ++ + ++ +  ++f++ v+   +a  + i+ + +l     v+  v+  ++ +l v  ++ l  + saG  + +++++   + +l  l   ++e + a  a+er+  +++  s+    +++  + p   +v+g +ef +v+++y +    +al++l++++ +G+   +vG +GaGks +   l r  + +sG+illd vdl+ l  +++r r ++++pqd+ l  a+v+e +
  MMETSP1061-20121228|44421_1  952 AKYLIVFASTILLSVLCTACRSEFIVTGGVRATKTVFESMLASVLKAPMSYFETVPMGRILNRFTYDTDVNDVTLTQQISMFMISISWYVAGIVVQIAIIPWMA-FTLFPVTVM-YLIFLHYYRLTGPDLQRIDALSrsPMQSMVSECLEGSTSIRIFHQDLRFIEKFQQIVDVNSSALLNYISVQRWLSCRmeVLGCVVVMLTSILLVCLHEQL--QTSAGLAGLLIIWSANFTITLNFLVITFSETEAAITAIERVDAMAELPSEAPLETRKGyQPPsnWPVQGLLEFRNVSLRYRTEL-PLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRGRgMSIIPQDPFLAGANVRECL 1331
                   5677777777888899**********************************************************************999999988777766665.333333222.22333344454444455555541146899********************************************986511344455555566666666655..4589*99*********************************998888776644333222122212689*************9888.79***********************************************************765**********999998865 PP

  == domain 4    score: 70.0 bits;  conditional E-value: 5.1e-22
    TIGR02204  467 dtllGergvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlviahrLatvlkadrivvldkGriveqGthaeLiakg 565 
                   +t+l e g ++s G +q + +ara+l + ++L+Ldeat+++d e++  +q+ l +   + t + iahrL t+++ d ++v+d Gr  e  + a+L+a+g
  MMETSP1061-20121228|44421_1 1386 STKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLADG 1484
                   58999****************************************************9999999************************99999999876 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   1.7     8e-05    0.0054     133     419 ..     163     456 ..     150     510 .. 0.66
   2 !   59.0   0.0   8.3e-19   5.6e-17     481     702 ..     571     804 ..     536     809 .. 0.80
   3 !   77.1   0.0   2.8e-24   1.9e-22     197     583 ..     955    1341 ..     946    1358 .. 0.86
   4 !   91.1   0.0   1.7e-28   1.1e-26     604     709 ..    1384    1493 ..    1378    1494 .. 0.92

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 8e-05
    TIGR03796 133 qkggrkpsllrallkrlkgsegallllvlaglllvlpglvvpafskifvDeilveeaqewl.rplllgllltallqvvltllqlal.lrrleiklavassa..rflwhilrlPveffaqRaageiasRvqln.dkvaellsgq..lattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdffsrwaGyqa...kllnaeqelgvatallsvlpelltslt..salilvvg..glrvlegeltiGmlvafqsll 419
                  +++  k++l++al+k  + +     ++ l     ++   ++p + + f+  i +e++++ + + l ++lllt++ + v  ll++++  + +++ +a++s++   + +h+lr+  +     ++gei + v ++ +k+ e+  +   + +  ++++lv  ++ + ++  ++l  +++++ ++ ++ l l++ ++v +nr   +d+     +a++ l+ + t k  g es++ +r++ +     k l +eq+  ++t +++v   +l+     sa +l  +  + +vl ++ t G+l+ f +l 
  MMETSP1061-20121228|44421_1 163 TRSQTKRQLIKALWKIATPTFIPAGICEL---GSTILVSIMPLVVRRFLYVIELESEENIMgKGLTWALLLTTM-TFVDGLLKQRYrHQSMKTGIALRSAIvnMVYKHVLRMSPQGKIGLTSGEINNLVAVDaQKLYEITQEAhlIWALPINIILVTWFLCL-IMGPTTLVGVVALIGFLPLIKLVLKQMAKVRSNRVRCSDQ--RVEIACSMLMGMRTTKLNGYESKYQERVQEARDeelKWLAKEQAWWATTLVITVSSPVLAMAFafSAYVLSSTpeSPKVLTAADTFGVLLLFGALR 456
                  55666666666666665555555555544...444455688999999999999998888772556666666654.44555555544156677778887775226789*****99999999********9986156666665432134445666655555554.4555666666677778888888777777777665444444..34567777888999**********999987765111667788888888888888777665433012333332222458888888888888887765 PP

  == domain 2    score: 59.0 bits;  conditional E-value: 8.3e-19
    TIGR03796 481 rnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkp..reeiprevlan.slalvdqdivlfegtvrdnltlwde..tipeedlvrAakDAaihdvilarpggyeaelaegganlsGGqrqRleiARaLvknP..siLilDEatsaLDaetEkaidenlrr......RgctciivaHRLsti..RdcdeiivlerGkvverGtHeellake 702
                  +n++ g  +  +  +  f+++l++G+ + + G+ GsGkst+   +    e  + ++ + + p  +e++p  v +n  +++  qd ++++ ++r+n+ + ++   +  +++++A+   a++ +i ++ g    ++ e g  lsGGqrqR+ +ARa  k+P  s +ilD+  saLD+ t k + e+l        +  ++++v+H    i  R +d+++++ +G+    G+ eel++ +
  MMETSP1061-20121228|44421_1 571 DNIENGNRENPSFTVGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPlpKETVPPMVEKNgRISYAPQDPFILNLSLRENIVFGSDfdPVRYNRVLDAC---ALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAgpdallKESAVLLVTHASHFIshRAVDKVLLMVNGRNEFLGSWEELTQLN 804
                  46777777777778999***********************87766666777888999998652268888888776269******************765431135555555555...7999**************************************8889******************9998643333336788999998755544499***********99999999999865 PP

  == domain 3    score: 77.1 bits;  conditional E-value: 2.8e-24
    TIGR03796  197 llgllltallqvvltllqlallrrleiklavassarflwhilrlPveffaqRaageiasRvqlndkvael.lsgqlattvldlvlvvfyalvmllydlvlaliaialaainvlalqlvsrkrvdanrrlqqdagklagvaiaglqsietlkAsglesdf...fsrwaGyqakllnaeqelgv.atallsvlpelltsltsalilvvgglrvlegeltiGmlvafqsllasflepveklvglvselqeleadlerldDvlenpvdeeleeeeekaaeseekekLsGkvelrnvtfgysaleapliedfslslkpGqrvAlvGgsGsGkstiaklvaGlyepwsGeilfDgkpreeipre.vlanslalvdqdivlfegtvrdnltlwdetipee 583 
                   l++ + t+ll+v+ t+ ++ +++   ++ + ++  ++l  +l+ P+++f+    g i +R + +  v ++ l++q++  ++++   v  ++v ++  +++a+  + ++++ ++ l++   +  d++r  +  ++ +++++ + l+   +++    +  f   f+++  + + +l +  ++++  + +++vl  ++  lts+l++++   +  ++ l  G l+ +    a+f+  ++ lv + se +   + +er+d ++e p +  le+  +k  +  ++  ++G +e+rnv+  y +  +  ++d+s+++  G+   +vG  G+Gks i+  +  l e  sG+il+D+++++++  + v    ++++ qd +l +++vr+ l  +++   +e
  MMETSP1061-20121228|44421_1  955 LIVFASTILLSVLCTACRSEFIVTGGVRATKTVFESMLASVLKAPMSYFETVPMGRILNRFTYDTDVNDVtLTQQISMFMISISWYVAGIVVQIAIIPWMAFTLFPVTVMYLIFLHYYRLTGPDLQRIDALSRSPMQSMVSECLEGSTSIRIFHQDLRFiekFQQIVDVNSSALLNYISVQRwLSCRMEVLGCVVVMLTSILLVCLHEQLQTSAGL-AGLLIIWS---ANFTITLNFLVITFSETEAAITAIERVDAMAELPSEAPLET--RKGYQPPSNWPVQGLLEFRNVSLRYRTELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSdVRGRGMSIIPQDPFLAGANVRECLDPFEQRTDDE 1341
                   778899*************************************************************986489999999********************************999999999988888877778888888888888888888877777766111555556677776666666652678899999999999998888887766666555.58888775...69**********************************99999..45555555589**************9998888****************************************************865166689*****************999888765544 PP

  == domain 4    score: 91.1 bits;  conditional E-value: 1.7e-28
    TIGR03796  604 gyeaelaegganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenlrrR..gctciivaHRLstiRdcdeiivlerGkvverGtHeella..kegaYarLi 709 
                    ++++l+egg+n+s G+rq l++ARaL ++P +L+lDEat+++D et+  i++ lr R  + t + +aHRL ti d d ++v++ G+  e     +lla  +eg +++L+
  MMETSP1061-20121228|44421_1 1384 LLSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRfpNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLAdgNEGIFSQLV 1493
                   56889*****************************************************777999*************************999999988856778888887 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.1   0.1   3.4e-07   2.3e-05      90     321 ..     261     493 ..     248     534 .. 0.70
   2 !   84.8   0.0   1.6e-26   1.1e-24     340     529 ..     573     771 ..     538     772 .. 0.83
   3 !   74.6   0.0   2.1e-23   1.4e-21     102     453 ..    1001    1354 ..     980    1371 .. 0.74
   4 !   46.8   0.1   5.3e-15   3.6e-13     461     530 .]    1385    1454 ..    1379    1454 .. 0.95

  Alignments for each domain:
  == domain 1    score: 21.1 bits;  conditional E-value: 3.4e-07
    TIGR02868  90 vrvYerLaraalallarlrrGdlLarlvaDvdalqdllvRvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlr..selaaqlldllegaaelvvaGaleavlaqveea.ereltraekraaaaea...lgaaltllaaGlavllallvgveavadgrlapvalAvlvLlpLaafealaalpaAaqqltrvraaaeRieevldakvevaeas 321
                    vY+++ r ++++   l +G++ + ++ D  +l +++  +   l+ Al + ++ v    +l +    ++ +++l  +  +pl++l ++++a+++ +r r   +  + + ++l+g+ + + +G   +++++v+ea ++el  ++k +a+++    ++ +  +la++ a  + +l   + + +   a+ ++ vl L     f + +     + +  ++ ++ eRi e l+ +  +++++
  MMETSP1061-20121228|44421_1 261 NMVYKHVLRMSPQGKIGLTSGEINNLVAVDAQKLYEITQEAH--LIWALPINIILVTWFLCLIMGPTTLVGVVAL--IGFLPLIKLVLKQMAKVRSNRVRcsDQRVEIACSMLMGMRTTKLNGYESKYQERVQEArDEELKWLAKEQAWWATtlvITVSSPVLAMAFAFSAYVLSSTPESPKVLTAADTFGVLLLFGALRFPI-SFAGRLIGNAAQALSSIERICEFLERPLRENDND 493
                  469*****************************9999998776..4677766666655554444444333333333..3346999999999988887777622567778899*********************98725667778888887764232566888999999999999999988888888888999888864333322.2223444444455566777777777774444443 PP

  == domain 2    score: 84.8 bits;  conditional E-value: 1.6e-26
    TIGR02868 340 lsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslse...sevrrvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLlad..apvllLDEPtehLDaeteeelledLlaaeegrt....vvlvthr 529
                  ++ +  +++   +   +++l++Ge + v G+ G+GKstLl+ ++   ++l+ +++++++++ + +     e + ++s+ +qd+ + + ++reN+ ++  d +     ++L +  L   +++L +    ++ge+g +lSGG+rqR+ lARa  ++     ++LD P   LD +t++ + e+L+a+ +       v+lvth 
  MMETSP1061-20121228|44421_1 573 IENGNRENPSfTVGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVppmVEKNGRISYAPQDPFILNLSLRENIVFGS-DFDPVRYNRVLDACALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQplSSCIILDDPFSALDSGTGKLVFEQLIAGPDALLkesaVLLVTHA 771
                  55555666666788899*****************************************99866443111344569*********************96.8999******************88777799*********************998733589***********************66544444444******6 PP

  == domain 3    score: 74.6 bits;  conditional E-value: 2.1e-23
    TIGR02868  102 allarlrrGdlLarlvaDvdalqdllv.RvivPlvvAlvvalaavaliallsvaaalvlaaallvalvvaplvslraarsaeqalarlrselaaqlldllegaaelvvaGaleavlaqveeaereltraekraaaaealga.altllaaGlavllallvgveavadgrlapvalAvlvLlpLaafea.laalpaAaqqltrvraaaeRieevldakvevaeasapaaeaaas..ekptlelrdlsvsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglldplkGevtldgvsvaslsesevr.rvvsvlaqdaHlFdttvreNlrlarpdatdeellaaLervgLadw 453 
                   +  + +  G +L+r++ D d ++d+++   i+  + ++  ++a +++  ++ + +a +l  + ++  ++     ++     ++  a +rs +++ + ++leg   ++++ +  +++++ ++  +    a     +++++ +  +++l + +++l ++l+    + ++ ++ + lA l ++  a f + l+ l   + + +++ +a eR++++++ ++e++ ++ +  ++ ++   +  le+r++s +y ++ + +l+++s+++++G++  +vG++GaGKs +  +l++l++ ++G+++ld+v++++l  s+vr r +s+++qd+ l  + vre l    ++ td+e+l+aL +v+++  
  MMETSP1061-20121228|44421_1 1001 SYFETVPMGRILNRFTYDTD-VNDVTLtQQISMFMISISWYVAGIVVQIAIIPWMAFTLFPVTVMY-LIFLHYYRLTGPDLQRIDALSRSPMQSMVSECLEGSTSIRIFHQDLRFIEKFQQIVDVNSSALLNYISVQRWLScRMEVLGCVVVMLTSILLVC--LHEQLQTSAGLAGLLIIWSANFTItLNFLVITFSETEAAITAIERVDAMAELPSEAPLETRKGYQPPSNwpVQGLLEFRNVSLRYRTELPlALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRgRGMSIIPQDPFLAGANVRECLDP-FEQRTDDEILEALDSVRMGPN 1354
                   45566678999999999998.555554155655555555555544444444444444444333322.2333344455556667777899*****************************9987666666665666666665515555555555555555444..5566666666776666666666651677889999*************99998865555555544444434456789************999**********************************************************95679****************9985.67789************9865 PP

  == domain 4    score: 46.8 bits;  conditional E-value: 5.3e-15
    TIGR02868  461 ldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLlaaeegrtvvlvthrl 530 
                   l+tkl+egg+ +S Gerq l lARaLl++ +vl+LDE t+++D et + + ++L+    ++t v ++hrl
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRL 1454
                   79********************************************9999999999999999******86 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.2   1.0      0.69        46     255     381 ..     278     404 ..     141     430 .. 0.68
   2 !   73.6   0.0   3.4e-23   2.3e-21     501     702 ..     589     802 ..     581     808 .. 0.86
   3 !   91.7   0.2   1.1e-28   7.4e-27     201     575 ..     952    1331 ..     861    1351 .. 0.80
   4 !   64.1   0.0   2.5e-20   1.7e-18     607     711 .]    1385    1493 ..    1379    1493 .. 0.90

  Alignments for each domain:
  == domain 1    score: -0.2 bits;  conditional E-value: 0.69
    TIGR00958 255 nktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLt...lvtll.alPlvllaekvfgkvyqklseevqeavakanqvaeEalsglrTVrSFaaEekEasrfkeklee.ilqlnkkka 381
                     Ge++  ++ D++++ e +++++ ++    + ++    f++ +    t   +v l+ +lPl+ l+ k + kv     ++v+    +  ++a  +l g+rT +  + E k  +r +e+ +e ++ l+k +a
  MMETSP1061-20121228|44421_1 278 LTSGEINNLVAVDAQKLYE-ITQEAHLIWALPINIILVTWFLCLIMGPTTlvgVVALIgFLPLIKLVLKQMAKVRS---NRVRC-SDQRVEIACSMLMGMRTTKLNGYESKYQERVQEARDEeLKWLAKEQA 404
                  4579999999999999987.56666554444455555555655554444400155565446777777766666543...44443.35667899999999999999888877777776665430333444443 PP

  == domain 2    score: 73.6 bits;  conditional E-value: 3.4e-23
    TIGR00958 501 tftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylhr...kvalVgqEPvlfsgsvreNiaYGltktedeevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPr..vLiLDeAtSALDa.....eveqllqe.sksaksrtvlliahrLstv..ekadkilvlkkgsvvelGthkqLme 702
                   f l+ Ge++ + GP GsGKSt    +    +  + ++ +   pl +     + +   ++    q+P + + s+reNi +G +  +  +   +  a+     i++l      ++ge+G  lsgGq+qr+ +ARA  ++P    +iLD+  SALD+       eql+   +   k+ +vll++h  + +  + +dk+l++ +g+ + lG +++L +
  MMETSP1061-20121228|44421_1 589 DFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMVEkngRISYAPQDPFILNLSLRENIVFGSDFDPV-RYNRVLDACALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQPLssCIILDDPFSALDSgtgklVFEQLIAGpDALLKESAVLLVTHASHFIshRAVDKVLLMVNGRNEFLGSWEELTQ 802
                  799**********************999999**************9887665544122688999*****************999883.3445666777888899*999999****************************64489***********777666667666678889**********99988435689*********999999999976 PP

  == domain 3    score: 91.7 bits;  conditional E-value: 1.1e-28
    TIGR00958  201 akaiflltllslaSsllaglrgGsfeyamarinlriredlfksllrQdigFfdenktGeltSRlssDtstvseslslnvnvllrnlvkllgllifmlslSprLtlvtllalPlvllaekvfgkvyqklseevq..eavaka..nqvaeEalsglrTVrSFaaEekEasrfkekleeilqlnkkkalayaly.lwttellgllilvlvLayGgqlv.legkvssg.nLvs.FlLYqlqlgeavreLsevysellkavGasekvFeyld...RkPqlelsgtlapkn..leGkveFqdVsFsYPsrpdkp.vlkdLtftlepGevvalVGPsGsGKStvaallenlYqPtgGqvllDgkplkeydhkylh.rkvalVgqEPvlfsgsvreNi 575 
                   ak +++++   l+S l +++r         r ++ + e ++ s+l+  + +f++ + G +  R + Dt +   +l++++++++ ++   ++++++ + + p +++  l+  P v ++  +f ++y+ +  ++q  +a++++  + ++ E l g   +r F  +     rf ek ++i ++n  + l+y+    w +  ++ l  v+v+     lv l++++++   L    +++  +++  ++ L+  +se   a+ a e+v  + +     P   ++g + p+n  ++G +eF++Vs  Y    + p  l+dL+f++ +G++  +VG  G GKS++   l +l + ++G++llD+++l+ +    ++ r + ++ q+P l +  vre +
  MMETSP1061-20121228|44421_1  952 AKYLIVFASTILLSVLCTACRSEFIVTGGVRATKTVFESMLASVLKAPMSYFETVPMGRILNRFTYDTDVNDVTLTQQISMFMISISWYVAGIVVQIAIIPWMAFT-LF--P-VTVMYLIFLHYYRLTGPDLQriDALSRSpmQSMVSECLEGSTSIRIFHQD----LRFIEKFQQIVDVNSSALLNYISVqRWLSCRMEVLGCVVVMLTSILLVcLHEQLQTSaGLAGlLIIWSANFTITLNFLVITFSETEAAITAIERVDAMAElpsEAPLETRKGYQPPSNwpVQGLLEFRNVSLRYR--TELPlALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRgRGMSIIPQDPFLAGANVRECL 1331
                   45556666666788888888888887888899999***************************************************99999999999999988864.43..4.34455678899999999999666777764378***************765....69999999***********9986515666556655555555555555525666654414444135799**************************976555111566667778888875558*************5..5555159****************************************************99888467999*********9999965 PP

  == domain 4    score: 64.1 bits;  conditional E-value: 2.5e-20
    TIGR00958  607 ydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDaeveqllqe..sksaksrtvlliahrLstvekadkilvlkkgsvvelGthkqLmeked..vykqlv 711 
                     t+++e Gs  s+G +q + +ARAL+ +P vL+LDeAt+ +D e+++ +q+    ++ + t++ iahrL+t+   d +lv+  g+  e    ++L ++ +  +++qlv
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKmlRTRFPNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLADGNegIFSQLV 1493
                   5799************************************************8666788999************************99998888887764434888776 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.14       9.2     282     477 ..     327     529 ..     291     535 .. 0.66
   2 !   58.4   0.0   1.3e-18   8.8e-17     473     681 ..     585     803 ..     550     812 .. 0.79
   3 !   81.1   0.9   1.9e-25   1.3e-23     220     551 ..     993    1331 ..     948    1347 .. 0.82
   4 !   82.7   0.0     6e-26     4e-24     584     689 ..    1386    1493 ..    1380    1497 .. 0.95

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.14
    TIGR01846 282 lvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaalllwfGaklvlkGelsvGqlvafn.....mlagrvsqPvlrlaqlWqdfqqvkialerlGdildsP.teass...agkaalpelkGaiefenirfrykedspevlsnls 477
                  lv +v+l+ +l l   v  ++ k   ++   s +   +    + g++t k    e+++++r ++      +  + +++ + +a+  +  ++  + a+ + f a ++ +   s+  l a +     +l g +  P+    +l  +  q+  ++er+ + l++P +e+ +    + ++ pe + +i+ ++  +  +ed+p vl+n  
  MMETSP1061-20121228|44421_1 327 LVGVVALIGFLPLIKLVLKQMAKVRSNRVRCSDQRVEIACSMLMGMRTTKLNGYESKYQERVQEARD--EELKWLAKEQAWWATTLVITVSSPVLAMAFAFSAYVLSSTPESPKVLTAADtfgvlLLFGALRFPISFAGRLIGNAAQALSSIERICEFLERPlRENDNdtnLSSICTPETTADISDSRNGMNQQEDAPLVLTNAR 529
                  4444555556555555555555544555555555555666666777888888888888877766444..444456667777777777777777777777777766666655555555544111114557777777777788888899999************4344442225778899999****99999***********9965 PP

  == domain 2    score: 58.4 bits;  conditional E-value: 1.3e-18
    TIGR01846 473 lsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlal.adPawlrr..qvgvvlqenvlfsrsirdnialakPa..iseekviaaaklaGahdfiselkqGyetevgekGaalsGGqrqrialaralvanP..rilildeatsaldyeseavimrnl....reickgrtviiiahrlstv..raadrilvlekGkivesGkheellak 681
                  +  + +++++Ge++ + Gp GsGkstl   +       + ++ +    l   + P ++ +  +++   q+ ++++ s+r+ni  ++    +  ++v+ a  l      i++l      ++ge+G++lsGGqrqr++lara  ++P    +ild+  sald  + +++ ++l    +++ k+ +v+ ++h    +  ra+d++l++ +G+    G++eel + 
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKeTVPPMVEKngRISYAPQDPFILNLSLRENIVFGSDFdpVRYNRVLDACALR---PDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLiagpDALLKESAVLLVTHASHFIshRAVDKVLLMVNGRNEFLGSWEELTQL 803
                  56678899******************98766555555556778888888642456555551269999****************98743114455666655553...3466776666689**************************55589********************966656799******9999766543389***********9999****99875 PP

  == domain 3    score: 81.1 bits;  conditional E-value: 1.9e-25
    TIGR01846  220 rhllalPlsyfesrrvGdtvarvreleqiref.ltgsaltvvldllf....vvvflavmffyspkltlvvlvslviylllsvivspilrkrvedkfeksaeaqsflvesvtgietikasavepqfkrrWerqlaayvaasfkvtklgnlasqaieliqkltaal..llwfGaklvlkGelsvGqlvafnmlagrvsqPvlrlaqlWqdfqqvkialerlGdildsPteassagka.....alpelkGaiefenirfrykedspevlsnlsldikaGeviGivGpsGsGkstltkllqrlyvPekGrvlvdgvdlaladPawlr.rqvgvvlqenvlfsrsirdni 551 
                     +l  P+syfe+  +G ++ r     ++ +  lt +  + ++ + +     vv +a++ + + +l+ v ++ l+ +l ++   +p l+ r++    + +  qs++ e++ g   i+    + +f +++++++    +a  + + +  + s  +e++  ++++l  +l    +  l+ +  +  l  + + + + +  +  l+  + +   +  a+er+  + + P+ea  +++      ++  ++G +ef+n+ +ry+ + p  l++ls++i+aG++ GivG++G+Gks +t  l rl   e G +l+d+vdl+ +  + +r r ++++ q+ +l    +r+ +
  MMETSP1061-20121228|44421_1  993 ASVLKAPMSYFETVPMGRILNRFTYDTDVNDVtLTQQISMFMISISWyvagIVVQIAIIPWMAFTLFPVTVMYLI-FLHYYRLTGPDLQ-RIDA-L-SRSPMQSMVSECLEGSTSIRIFHQDLRFIEKFQQIVDVNSSALLNYISVQRWLSCRMEVLGCVVVMLtsILLVCLHEQLQTSAGLAGL--LIIWSANFTITLNFLVITFSETEAAITAIERVDAMAELPSEAPLETRKgyqppSNWPVQGLLEFRNVSLRYRTELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRgRGMSIIPQDPFLAGANVRECL 1331
                   456889****************98877777653888888888888762222468899999999999999888765.5667777888885.6765.4.456789*******************************999999**************9999888777223444455555554444444..455677777778888889999999999*********99999865444311122555799************************************************************************99999799**********999999865 PP

  == domain 4    score: 82.7 bits;  conditional E-value: 6e-26
    TIGR01846  584 etevgekGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreickgrtviiiahrlstvraadrilvlekGkivesGkheellak..eglyakly 689 
                    t+++e G+++s G rq + laral+++P++l+ldeat+++d e++a i++ lr    + t+++iahrl+t+ + d +lv++ G+ +e    ++lla+  eg +++l 
  MMETSP1061-20121228|44421_1 1386 STKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLADgnEGIFSQLV 1493
                   6899********************************************************************************************986688998885 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.0   1.0      0.18        12     119     385 ..     164     440 ..     102     533 .. 0.68
   2 !   47.4   0.0   3.3e-15   2.2e-13     470     673 ..     586     802 ..     571     806 .. 0.86
   3 !   72.8   0.4   6.6e-23   4.4e-21     203     565 ..     979    1349 ..     949    1353 .. 0.74
   4 !   81.0   0.0   2.3e-25   1.5e-23     578     682 ..    1385    1493 ..    1383    1496 .. 0.94

  Alignments for each domain:
  == domain 1    score: 2.0 bits;  conditional E-value: 0.18
    TIGR03797 119 kklklldllkfalrgaerdllavllvgllgtllglvvPlatgilldeviPdaersll...lqvalallaaalgallfqlaqslavlRletavdaslqaavwdrLLrlpasfFreysagdLasram.gvsqirrllsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisll.......a 385
                  ++ + ++l+k  ++ a+  ++   ++ l  t+l  ++Pl+    l  +  ++e++ +   l  al l+ ++++  l++       ++   a+ +++   v+ ++Lr++ +     ++g++++ +    +++ ++  +a l  +l   + l++ +l l+   + +lv+v+ ++  + ++ ++   + + +++ ++ + +   +++ ++ g+   ++ g e++   + ++   e+ k+ +k q +  ++ v+++  pvl++a  f + +           
  MMETSP1061-20121228|44421_1 164 RSQTKRQLIKALWKIATPTFIPAGICELGSTILVSIMPLVVRRFLYVIELESEENIMgkgLTWALLLTTMTFVDGLLKQRYRHQSMKTGIALRSAIVNMVYKHVLRMSPQGKIGLTSGEINNLVAvDAQKLYEITQEAHLIWALPINIILVTWFLCLIMGPT-TLVGVVALIGFLPLIKLVLKQMAKVRSNRVRCSDQRVEIACSMLMGMRTTKLNGYESKYQERVQEARDEELKWLAKEQAWWATTLVITVSSPVLAMAFAFSAYVLSStpespkvL 440
                  555667788888888888888888888888888888888887776544444444433211345566666777777777777777888888888888999999999999999999999999876531456677777777777777777777776666666554.4555554444444444444444455556688889999999********************************************************9999887765555544333 PP

  == domain 2    score: 47.4 bits;  conditional E-value: 3.3e-15
    TIGR03797 470 ddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavRrqlGvVL...QngrllsgsileniaggasltldeaweaarmagleeDikamPmglhTvisegggtlSGGQrQRlliAralvrkP..rillfDEATSALDNrtQaiVsesl.....eklkvtRi.viAHRLSTi..rnadrilvleeGrvveqGsyeeLla 673
                   +  ++ ++Ge + + G+ GsGKStll  +L   +  + +++     l k  v  +  + G +    Q+  +l  s+ eni+ g+ + + +   ++   +l  Dik++  +    i e g tlSGGQrQR+ +Ara  ++P    +++D+  SALD  t ++V e l     + lk + + ++ H    i  r  d++l + +Gr    Gs+eeL +
  MMETSP1061-20121228|44421_1 586 GSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMVEKNGRISyapQDPFILNLSLRENIVFGSDFDPVRYNRVLDACALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLiagpdALLKESAVlLVTHASHFIshRAVDKVLLMVNGRNEFLGSWEELTQ 802
                  56678999************************99999************9999998888887643339999**************************************999999**************************6669*******************998444433366555414566555552266899********999999999976 PP

  == domain 3    score: 72.8 bits;  conditional E-value: 6.6e-23
    TIGR03797  203 letavdaslqaavwdrLLrlpasfFreysagdLasramgvsqirrl.lsgatlkallssifallnlvlllvyslklalvavllalvaiavtlvlgllqvrkerkllelegklsgltvqlingisKlrvagaeerafaawakefseqrklelkaqriedlltvlnavlpvltsavlfalaisllaaaklslgsflafntafgsflkavtslaetlievlavvplyerakPileaepE....vdeekvdpgk..LsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStllrlLLgFekPesGsvlyDGqdlekldvqavR.rqlGvVLQngrllsgsileniaggasltldeaweaarma 565 
                      ++  ++  +++  +L+ p+s+F +   g +++r +  ++++ + l++++   ++s    +  +v+ ++    +a     ++++ +  + +  l+    +r     ++ +++++ + ++g + +r+   + r+  ++++    +++  l+  +++ +l+   +vl  +++++  +l++ l ++ + s+g      +  ++f+ ++  l+ t++e+ a++ + er++ + e   E    +++    p +  ++G +e ++v+ rY+++ pl L+d+s+ki +G+  +ivG  G+GKS++   L+   + esGs+l D  dl++l ++ vR r + ++ Q+  l  +++ e++   ++ t de  ea+  +
  MMETSP1061-20121228|44421_1  979 GGVRATKTVFESMLASVLKAPMSYFETVPMGRILNRFTYDTDVNDVtLTQQISMFMISISWYVAGIVVQIAIIPWMAFTLFPVTVMYLIFLHYYRLTGPDLQRIDALSRSPMQSMVSECLEGSTSIRIFHQDLRFIEKFQQIVDVNSSALLNYISVQRWLSCRMEVLGCVVVMLTSILLVCLHEQLQTSAGLAGLLIIWSANFTITLNFLVITFSETEAAITAIERVDAMAELPSEapleTRKGYQPPSNwpVQGLLEFRNVSLRYRTELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRgRGMSIIPQDPFLAGANVRECLDPFEQRTDDEILEALDSV 1349
                   555666677778888999******************987777765315555555555555555544444444444444333333333333444444444567777778899************************99999999999999888888888888877777766666555555554333333333222233334556667778899999999999999999998776555111044555556644489*****************************************************************************77799***************************99998765 PP

  == domain 4    score: 81.0 bits;  conditional E-value: 2.3e-25
    TIGR03797  578 lhTvisegggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl..kvtRiviAHRLSTirnadrilvleeGrvveqGsyeeLla..keGlfaela 682 
                   l T ++egg++ S G rQ l +Aral ++P++l++DEAT  +D +t a + + l +   + t + iAHRL Ti++ d +lv+++Gr +e     +Lla  +eG+f +l+
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRfpNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLAdgNEGIFSQLV 1493
                   568899***********************************************986434889999********************************97789*****98 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   64.2   0.0   2.8e-20   1.9e-18     493     697 ..     588     802 ..     549     806 .. 0.83
   2 !   59.1   0.1   9.9e-19   6.7e-17     216     586 ..     972    1347 ..     954    1353 .. 0.74
   3 !   54.1   0.0     3e-17   2.1e-15     601     706 ..    1385    1493 ..    1380    1495 .. 0.89

  Alignments for each domain:
  == domain 1    score: 64.2 bits;  conditional E-value: 2.8e-20
    TIGR01193 493 islkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdid...khelrqlinylPqePfifsGsilenlllgaken.vsqeeikkaveiaeikddieklplGyqtelseeassisgGqkqrlalarallsd..skvlildestsnldlltekkivenllk.....lkdktiifvahrls.va.kksdkiivldeGkiieqGshkellk 697
                   +++++k e +++ G  GsGkstl   +++  +a + ++++++  l +       e    i+y Pq+Pfi++ s+ en+++g+  + v  +++ +a+    ++ di++l      ++ e + ++sgGq+qr++lara   +  s ++ild+  s ld  t k + e+l+      lk+ ++++v+h  + ++ + +dk++ + +G+    Gs++el +
  MMETSP1061-20121228|44421_1 588 FDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETvppMVEKNGRISYAPQDPFILNLSLRENIVFGSDFDpVRYNRVLDAC---ALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQplSSCIILDDPFSALDSGTGKLVFEQLIAgpdalLKESAVLLVTHASHfIShRAVDKVLLMVNGRNEFLGSWEELTQ 802
                  56788999999*******************999999999999999965441113455678**********************985426666666666...5699*****99999***********************99875699*************99999999998555555999********87624414589******999888888888765 PP

  == domain 2    score: 59.1 bits;  conditional E-value: 9.9e-19
    TIGR01193  216 kafllivlgqrlsidiilsyikhlfelPmsffstrrvGeivsrftdaskiidalastilslfldlsilvivglvlvlqniklfllslvaiPvyaviiilfkk.tfeklnkdameanavlnssiiedlnGietiksltseeerykkidsefadylekslkyakaeavqqalkavlklilnvvilwvGallv.ireklt.....lGqlltfnallsyflnPleniinlqpklqaarvannrlnevylvdsefkekkklt....elenlngdievndvsysyGygse.vledislkikknekitlvGlsGsGkstlakllvkffqaesGeillngkslkdidkhelr.qlinylPqePfifsGsilenlllgakenvsqeeikkave 586 
                   ++ +++  g r ++ +  s +  +++ Pms+f t  +G i+ rft  + + d   +  +s+f+      + g+v+ +  i  +  +l  + v  +i + + + t   l++    + + ++s + e l+G  +i+ +  +    +k ++  +d   ++l + +   vq+ l + +++   vv++ +  llv ++e+l       G l+ ++a    f+  l+ ++   +   aa  a +r++ +  ++se   + ++     ++  ++g +e+ +vs +y    + +l+d+s+ki + ++  +vG +G+Gks+++  l ++ + esG ill++++l+ +  + +r + ++ +Pq+Pf+    + e   l+  e+ +++ei +a++
  MMETSP1061-20121228|44421_1  972 RSEFIVTGGVRATKTVFESMLASVLKAPMSYFETVPMGRILNRFTYDTDVNDVTLTQQISMFMISISWYVAGIVVQIAIIPWMAFTLFPVTVMYLIFLHYYRlTGPDLQRIDALSRSPMQSMVSECLEGSTSIRIFHQDLRFIEKFQQ-IVDVNSSALLNYI--SVQRWLSCRMEVLGCVVVMLTSILLVcLHEQLQtsaglAGLLIIWSA---NFTITLNFLVITFSETEAAITAIERVDAMAELPSEAPLETRKGyqppSNWPVQGLLEFRNVSLRYRTELPlALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRgRGMSIIPQDPFLAGANVREC--LDPFEQRTDDEILEALD 1347
                   55556666677778888889999**********************99999999999999999866666677888877777777788888877555555554415566776666678899**************999887655555543.3444444443333..46777777777766666666666666234444411111355666665...56667777777778999**************99997544443300114445678899********99876379********************************************************9446999******987777775..46666667777777765 PP

  == domain 3    score: 54.1 bits;  conditional E-value: 3e-17
    TIGR01193  601 yqtelseeassisgGqkqrlalarallsdskvlildestsnldlltekkivenl.lklkdktiifvahrlsvakksdkiivldeGkiieqGshkellk..enGfyasli 706 
                   ++t+l e +s+ s+G +q l laralls+ kvl+lde+t+++d  t+  i + l  ++ + t++ +ahrl+     d ++v+d G+  e     +ll+  ++G +++l+
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLrTRFPNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLAdgNEGIFSQLV 1493
                   5799****************************************99987666552357799*****************************9999999833468888887 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.1       3.9   2.6e+02     254     295 ..     309     350 ..     304     360 .. 0.82
   2 !   65.0   0.0   1.6e-20   1.1e-18     345     560 ..     579     804 ..     544     824 .. 0.79
   3 !   41.8   0.0   1.8e-13   1.2e-11     330     446 ..    1230    1347 ..    1213    1352 .. 0.90
   4 !   64.3   0.0   2.6e-20   1.8e-18     462     576 ..    1386    1502 ..    1378    1511 .. 0.89

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 3.9
    TIGR01192 254 lviilvigtvlvkkgelsvgeviafigfanlligrldqlkaf 295
                  + iilv   + ++ g  ++  v+a+igf  l+   l q+ + 
  MMETSP1061-20121228|44421_1 309 INIILVTWFLCLIMGPTTLVGVVALIGFLPLIKLVLKQMAKV 350
                  567788888888999999999*********999999999765 PP

  == domain 2    score: 65.0 bits;  conditional E-value: 1.6e-20
    TIGR01192 345 anssqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdi..atvtreslrk.siatvfqdagllnrsirenirlgredatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailkn..apilvldeatsaldvetearvkdai....dalrknrttfiiahrlstv..readlvlfldqgrliekgsfdeliqkd 560
                   n s  v    fe + g+ + + gp g+gk+tl+n +    +  + ++++  + +  +tv     ++  i+   qd  +ln s+reni +g +           +a a +  i++   + + ++gerg  lsgg+rqr+++ara  k+  +  ++ld+  sald  t   v + +    dal k+ + ++++h    +  r  d vl++ +gr    gs++el+q +
  MMETSP1061-20121228|44421_1 579 ENPSFTVGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLpkETVPPMVEKNgRISYAPQDPFILNLSLRENIVFGSDFDPVR-YNRVLDACALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQplSSCIILDDPFSALDSGTGKLVFEQLiagpDALLKESAVLLVTHASHFIshRAVDKVLLMVNGRNEFLGSWEELTQLN 804
                  45666777888************************998889999999999988762245544433332477778*****************8754332.233344455566677777778899************************8445789*************9888665445569***********997655433999*********************976 PP

  == domain 3    score: 41.8 bits;  conditional E-value: 1.8e-13
    TIGR01192  330 nvkgavefrdisfefans.sqgvrdvsfeakagqtvaivgptgagkttlinllqrvydpksgqilidgvdiatvtreslr.ksiatvfqdagllnrsirenirlgredatdeevveaak 446 
                    v+g +efr++s  +       + d+sf++ ag++  ivg tgagk+++   l r+ + +sg il+d vd++t+    +r + ++ + qd  l    +re +    e+ td+e++ea +
  MMETSP1061-20121228|44421_1 1230 PVQGLLEFRNVSLRYRTElPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRgRGMSIIPQDPFLAGANVRECLDP-FEQRTDDEILEALD 1347
                   599***********976516799****************************************************999996789999*************9885.57889999999965 PP

  == domain 4    score: 64.3 bits;  conditional E-value: 2.6e-20
    TIGR01192  462 dtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidalrknrttfiiahrlstvreadlvlfldqgrliekgsfdeliq..kdgrfakllrasglliee 576 
                    t++ e g+++s gerq l +ara+l +  +lvldeat+++d et+a +++ + +   n t   iahrl t+ + d vl +d gr  e  +  +l    ++g f +l+ ++g    +
  MMETSP1061-20121228|44421_1 1386 STKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLAdgNEGIFSQLVDSTGAESSK 1502
                   5788999************************************************999*999**************************99998886523579999999988876555 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   1.4       1.4        94      48     170 ..     226     349 ..     194     430 .. 0.69
   2 !   86.1   0.0   6.4e-27   4.3e-25     321     540 ..     572     800 ..     552     803 .. 0.81
   3 !   35.2   0.5   1.7e-11   1.1e-09     313     427 ..    1231    1345 ..     953    1351 .. 0.68
   4 !   55.0   0.0   1.6e-17   1.1e-15     446     540 ..    1387    1480 ..    1384    1483 .. 0.92

  Alignments for each domain:
  == domain 1    score: -0.9 bits;  conditional E-value: 1.4
    TIGR01842  48 ltvlvvvlylvlglleavRskvlvrigekldkalnkkifkaaieatlerkkkeslqalrDldql...rqFltgtgliaffDlPwlpiyllvvfllhpylGllalvgavvlvalallneaatkkklk 170
                   ++l+ ++ +v gll+   ++  +++g  l +a+ + ++k +++++ + k + ++  +++l ++   + +  ++    +  lP  +  +lv + l   +G ++lvg+v l++   l + + k+ +k
  MMETSP1061-20121228|44421_1 226 WALLLTTMTFVDGLLKQRYRHQSMKTGIALRSAIVNMVYKHVLRMSPQGKIGLTSGEINNLVAVdaqKLYEITQEAHLIWALPINI--ILVTWFLCLIMGPTTLVGVVALIGFLPLIKLVLKQMAK 349
                  56777788888899988777788899999999999999999999887666555666666665552112232233334455555554..57889999999999999999998866555544443333 PP

  == domain 2    score: 86.1 bits;  conditional E-value: 6.4e-27
    TIGR01842 321 nvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretlGk...siGYlPqdveLfeGtvaeniaRfeenadaekvieaaklagvhelilrlpkGYdteigegGaaLsgGqrqRiaLaRalygdP..klvvLDePnanLDeeGeqalakalk...elkarkitvvvithrpslle..lvdkilvlkdGalkafGereev 540
                  n++  + e+   t+   +f+l++Ge++++ Gp gsGks+L   ++   +  + ++ + +  l +     + +   +i Y Pqd  +++ ++ eni  f+ ++d+ +      +      i +l      +ige+G +LsgGqrqR++LaRa y +P    ++LD+P + LD+   + + + l+   ++  ++ +v+++th  + ++  +vdk+l++ +G+ + +G+ ee+
  MMETSP1061-20121228|44421_1 572 NIENGNRENPSFTVGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMVEkngRISYAPQDPFILNLSLRENIV-FGSDFDPVRYNRVLDACALRPDIKQLGGSDLVQIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIagpDALLKESAVLLVTHASHFIShrAVDKVLLMVNGRNEFLGSWEEL 800
                  55555556666789999********************************************98876544433122599*****************7.676688765555555555566788888777789**************************4448***********9655555555542336788999********99986337*************99998876 PP

  == domain 3    score: 35.2 bits;  conditional E-value: 1.7e-11
    TIGR01842  313 pegelevenvslvppeekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwlpasGsvrlDgadlkqwdretl.GksiGYlPqdveLfeGtvaeniaRfeenadaekviea 427 
                   ++g le  nvsl+  +e    l+++sf++ aG++ +i+G  g+Gkss++  l   ++ +sGs+ lD +dl+     ++ G+ +  +Pqd  L    v e +  fe+  ++++++ea
  MMETSP1061-20121228|44421_1 1231 VQGLLEFRNVSLRYRTELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVrGRGMSIIPQDPFLAGANVRECLDPFEQ-RTDDEILEA 1345
                   688999999**99999999*****************************************************9865544**********9999999****999999.777888887 PP

  == domain 4    score: 55.0 bits;  conditional E-value: 1.6e-17
    TIGR01842  446 teigegGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkelkarkitvvvithrpsllelvdkilvlkdGalkafGereev 540 
                   t++ egG++ s G rq + LaRal  +Pk++vLDe  a++D e + a+++ + + +  ++t v+i+hr + +   d +lv+++G+ ++f    ++
  MMETSP1061-20121228|44421_1 1387 TKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETD-AFIQKMLRTRFPNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKL 1480
                   8899*************************************9987.677888999*******************************999776665 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   0.0   5.1e-20   3.4e-18      19     228 ..     587     798 ..     577     816 .. 0.80
   2 !   14.6   0.0   4.9e-05    0.0033       2      72 ..    1235    1302 ..    1234    1322 .. 0.83
   3 !   34.4   0.0   4.5e-11     3e-09     135     233 ..    1386    1483 ..    1379    1494 .. 0.91

  Alignments for each domain:
  == domain 1    score: 63.7 bits;  conditional E-value: 5.1e-20
    TIGR00972  19 dvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkld.vvelrkkvGmvfqkpnpfpmsiydnvayglrlkgikdkkeldeiv.eesLkkaalwdevkdklkksalsLsGGqqqrlciaralaveP..evlLlDePtsaLDpiateki.eeli...qeLkkkytivivthnmqq.aarvsdktaffleGelveegete 228
                    ++e++k ++ ++ Gp G+Gkstll  +    +++e      k+ ++   + ++++  +ve   ++    q p   + s+ +n+++g     ++  ++ld+ + +  +k+ +  d v  ++ + +++LsGGq+qr+++ara   +P    ++lD+P saLD+ + + + e+li   + L k+  +++vth  ++ ++r  dk+ ++++G+    g+ e
  MMETSP1061-20121228|44421_1 587 SFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALER-----KLSMSSLPLPKETVPpMVEKNGRISYAPQDPFILNLSLRENIVFGSDFDPVRYNRVLDACAlRPDIKQLGGSDLV--QIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVfEQLIagpDALLKESAVLLVTHASHFiSHRAVDKVLLMVNGRNEFLGSWE 798
                  567899*******************9877655555544.....4445555554444431466677999999999999************************98725678888888877..5899**********************97779************988876477773334699999*******9887367999********9865555555 PP

  == domain 2    score: 14.6 bits;  conditional E-value: 4.9e-05
    TIGR00972    2 levknlklfygeke..alkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiyd 72  
                   le +n++l y  +   al+d++++i++ k  +++G +G+Gks++  +l rl +       +G++ll++ d++ 
  MMETSP1061-20121228|44421_1 1235 LEFRNVSLRYRTELplALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIE-----SGSILLDNVDLTT 1302
                   577889999988755599*********************************9988.....6777777777765 PP

  == domain 3    score: 34.4 bits;  conditional E-value: 4.5e-11
    TIGR00972  135 kdklkksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkkytivivthnmqqaarvsdktaffleGelveegeteqifek 233 
                    +kl++ + + s G +q l +aral  +P+vl+lDe t+++D ++ + i+++++    + t+v + h ++  +   d + ++  G+  e + +++++ +
  MMETSP1061-20121228|44421_1 1386 STKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRLNTIMD-YDCVLVMDAGRAAEFDAPAKLLAD 1483
                   57899999*************************************************************97665.588999999999999999998776 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   9.2e-16   6.2e-14      20     232 ..     587     799 ..     577     807 .. 0.75
   2 !   31.4   0.0   3.9e-10   2.6e-08       1      75 [.    1234    1309 ..    1234    1319 .. 0.90
   3 !   26.8   0.0   9.7e-09   6.5e-07     143     223 ..    1393    1470 ..    1381    1488 .. 0.78

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 9.2e-16
    TIGR02315  20 nvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLsgrlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqp..klilaDEPiasLDpksskqvmdllkr....inkekgitvivnlHqvd.lakkyadrivglkageivfdgasse 232
                    ++e++kGe+++v G+ G+Gkstll  i    e  + ++ ++   + k+    + +   +i++  q+   i +l+  en++ g        + +l     +   k l   + v++     +r  +LsGGq+qRv++aRa  +qp  + i+ D+P ++LD  + k v+++l      + ke   +v++  H  + ++++  d+++ + +g+  f g+ +e
  MMETSP1061-20121228|44421_1 587 SFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMVEKNGRISYAPQD-PFILNLSLRENIVFGSDFDPVRYNRVLDACALRPDIKQLGGSDLVQI----GERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAgpdaLLKE--SAVLLVTHASHfISHRAVDKVLLMVNGRNEFLGSWEE 799
                  6799**********************999999999999999999999999999999999999999998.578899******99986666666666666555554444444444444....368899******************85569*******************9985411112222..2333333433314455666666666666666665555 PP

  == domain 2    score: 31.4 bits;  conditional E-value: 3.9e-10
    TIGR02315    1 llevenlskvypngk.qalknvnleikkGelvaviGlsGaGkstllrsinrlveissgsillegkevtklkkkelr 75  
                   lle++n+s +y ++   al++++++i  G+  +++G+ GaGks +  ++ rlvei+sgsill++ ++t+l  +++r
  MMETSP1061-20121228|44421_1 1234 LLEFRNVSLRYRTELpLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVR 1309
                   589999999999775269*************************************************998877766 PP

  == domain 3    score: 26.8 bits;  conditional E-value: 9.7e-09
    TIGR02315  143 adqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqvdlakkyadrivglkage 223 
                    ++ s G++q + +aRal+ qpk+++ DE +as+D ++   + ++l++     + t +   H+++  + y d ++ + ag+
  MMETSP1061-20121228|44421_1 1393 GSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFP--NTTLVTIAHRLNTIMDY-DCVLVMDAGR 1470
                   57899*************************************999997544..44555556999999998.4555566665 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   6.5e-05    0.0044      22      49 ..     586     613 ..     569     629 .. 0.86
   2 !   38.1   0.0   3.7e-12   2.5e-10     135     218 ..     701     790 ..     692     792 .. 0.84
   3 !   19.3   0.0     2e-06   0.00013       5      73 ..    1238    1304 ..    1234    1318 .. 0.83
   4 !   36.7   0.0   9.6e-12   6.5e-10     130     218 ..    1384    1470 ..    1374    1473 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 6.5e-05
    TIGR02211  22 kgvsleiekgelvaivGssGsGkstllh 49 
                     ++e++kge++ + G  GsGkstll 
  MMETSP1061-20121228|44421_1 586 GSFDFELRKGEIMVVCGPVGSGKSTLLN 613
                  5689**********************96 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 3.7e-12
    TIGR02211 135 inkkpselsGGerqrvaiaralvnkP..klvladePtgnldkktakkife.lllelnke.kntallvvthdlelakk..ldrvlelkdgk 218
                  i ++   lsGG+rqrv++ara  ++P  ++++ d+P + ld+ t k +fe l+   +   k+ a+l+vth ++++ +  +d+vl + +g+
  MMETSP1061-20121228|44421_1 701 IGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEqLIAGPDALlKESAVLLVTHASHFISHraVDKVLLMVNGR 790
                  5567789******************9878********************83555555442678999*******99642389999998886 PP

  == domain 3    score: 19.3 bits;  conditional E-value: 2e-06
    TIGR02211    5 enltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldkptsGevllkGkelskls 73  
                   +n++ +y+++      l+++s++i +g++ +ivG +G+Gks +   l  l +  sG++ll+  +l++l 
  MMETSP1061-20121228|44421_1 1238 RNVSLRYRTEL--PLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLG 1304
                   55555665432..3469********************************************99999885 PP

  == domain 4    score: 36.7 bits;  conditional E-value: 9.6e-12
    TIGR02211  130 glekrinkkpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdlelakkldrvlelkdgk 218 
                    l+ ++++  s++s Gerq   +aral+++Pk+++ de t+ +d +t   i ++l+   +  nt+l+ ++h l+ +   d vl +  g+
  MMETSP1061-20121228|44421_1 1384 LLSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRT--RFPNTTLVTIAHRLNTIMDYDCVLVMDAGR 1470
                   588999****************************************99999999874..7789**********************9987 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0   1.2e-13   8.3e-12      22     214 ..     588     789 ..     579     791 .. 0.78
   2 !   34.0   0.0   7.7e-11   5.2e-09       2      72 ..    1235    1305 ..    1234    1325 .. 0.91
   3 !   29.7   0.0   1.6e-09   1.1e-07     128     205 ..    1385    1461 ..    1377    1471 .. 0.79

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.2e-13
    TIGR00960  22 vtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrdrevpflrrqiGivf...qdfkllsdrtvydnvalalriiGvkgreieerv..saalekvGlkdkak..alPvqlsgGeqqrvaiaravvnkP..allladePtgnlddelsrdilell.e..evnraGttvlvathdenlveskr.krvltlskG 214
                    +++ kGe++ + G+ G+Gkstll+ il  +++ + k+ +s  +l k   + vp +  + G +    qd  +l + +  +n+++      v+ + + +    +  ++++G +d  +  +  v+lsgG++qrv++ara  ++P  + ++ d+P + ld+ + + ++e l    +   +  +vl+ th+ ++++++   +vl + +G
  MMETSP1061-20121228|44421_1 588 FDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPK---ETVPPMVEKNGRISyapQDPFIL-NLSLRENIVFGSDFDPVRYNRVLDACalRPDIKQLGGSDLVQigERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLiAgpDALLKESAVLLVTHASHFISHRAvDKVLLMVNG 789
                  6799************************************99998765...56666666555443232888777.6899******99988887776655431155788999887544227899********************4447999***************9866232234456789**********998762455555555 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 7.7e-11
    TIGR00960    2 ikfeqvskaykgaaelaldnvtvkiekGelvflvGhsGaGkstllklilgiekpsaGkirvsgqdltklrd 72  
                   ++f++vs +y++   lal+++++ki+ G+   +vG +GaGks++   +    +  +G i++ + dlt+l  
  MMETSP1061-20121228|44421_1 1235 LEFRNVSLRYRTELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGL 1305
                   79****************************************************************99865 PP

  == domain 3    score: 29.7 bits;  conditional E-value: 1.6e-09
    TIGR00960  128 lkdkakalPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilelleevnraGttvlvathdenlveskr 205 
                   l+ k ++   ++s Ge+q +++ara++++P++l+ de t+ +d e+   i ++l++     tt++  +h  n + ++ 
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPN-TTLVTIAHRLNTIMDYD 1461
                   566667777899***************************************999886655.55555566666665554 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   2.6e-15   1.7e-13      17     218 ..     586     799 ..     578     808 .. 0.79
   2 !   28.8   0.0   2.4e-09   1.6e-07       3      82 ..    1237    1318 ..    1235    1338 .. 0.88
   3 !   28.4   0.0   3.3e-09   2.2e-07     126     212 ..    1390    1473 ..    1382    1484 .. 0.80

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 2.6e-15
    TIGR03410  17 rdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervka.G.iayvpqGreifpkltveenlelglealkkkekkipeeiyelFPvlkem.......lkRrgGdLsGGqqqqlaiaRaLvteP..klllLDePteGiqPsiikeiekvikelake..kdlaillveqvldfalela.drylvlerGevvaegekee 218
                   + ++e++kge+++v G  g Gk+tll  ++   ++ + ++++++  + k +    v++ G i+y pq   i+ +l+ +en+  g +  + + +++ + + +l P +k++          rg  LsGGq+q +++aRa  ++P   +++LD+P   +     k + + + +  +   k+ a+llv +  +f  + a d++l++ +G+    g+ ee
  MMETSP1061-20121228|44421_1 586 GSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMVEKnGrISYAPQDPFIL-NLSLRENIVFGSDFDPVRYNRVLD-ACALRPDIKQLggsdlvqIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGPDAllKESAVLLVTHASHFISHRAvDKVLLMVNGRNEFLGSWEE 799
                  567899****************************************9987654444433145******98766.7**************988777766.567888888763222222357999********************6669******99998887776644443332222367899******9998765548999999998776666665 PP

  == domain 2    score: 28.8 bits;  conditional E-value: 2.4e-09
    TIGR03410    3 venlevaYges..evlrdvslevekgevvavlGrngvGkttllkalvgllkvksGeielegeditklkpeervkaGiayvpq 82  
                    +n+++ Y +    +l+d+s+++++g+   ++Gr g+Gk+++  al  l++++sG+i l++ d+t+l  ++   +G++ +pq
  MMETSP1061-20121228|44421_1 1237 FRNVSLRYRTElpLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRGRGMSIIPQ 1318
                   5666666655411589*****************************************************99999*******9 PP

  == domain 3    score: 28.4 bits;  conditional E-value: 3.3e-09
    TIGR03410  126 kRrgGdLsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlaillveqvldfaleladrylvlerGevva 212 
                   +  g + s G +q l +aRaL+++Pk+l+LDe t  i     + i+k++++     + +++ + + l+  ++  d +lv++ G+  +
  MMETSP1061-20121228|44421_1 1390 EEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRF--PNTTLVTIAHRLNTIMD-YDCVLVMDAGRAAE 1473
                   5567799****************************999998888888887543..45677778888888888.58888888888665 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.0   9.3e-14   6.2e-12      20     209 ..     587     785 ..     578     790 .. 0.82
   2 !   29.3   0.0     2e-09   1.4e-07       2      87 ..    1235    1319 ..    1234    1329 .. 0.87
   3 !   30.0   0.0   1.2e-09   8.4e-08     127     198 ..    1385    1455 ..    1379    1469 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 9.3e-14
    TIGR02673  20 dvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalevrgkkeeeiqk..rveevlelvgledkak..alpeelsgGeqqRvaiaRaivnkP..elllaDePtGnlDdelserildllke...lnkrGttvivathdeelverv.kkrvle 209
                  + +++++kge++ + G+ G+Gk+tll+ +l  +++ + +++++   + + +   +     +i+   qD   + + +  en+ +    +  + +++      +  ++++g +d ++  +   +lsgG +qRv++aRa  ++P  + ++ D+P   lD+ + + +++ l +   +  +  +v+++th++++++++   +vl 
  MMETSP1061-20121228|44421_1 587 SFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMVEKNGRISYAPQDPF-ILNLSLRENIVFGSDFDPVRYNRVLDacALRPDIKQLGGSDLVQigERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAgpdALLKESAVLLVTHASHFISHRaVDKVLL 785
                  5789*********************************9**99999988888888888888999999**75.55899*******999887777766541156788999999986651167789*******************6668*****************99876541225567899*********998873444444 PP

  == domain 2    score: 29.3 bits;  conditional E-value: 2e-09
    TIGR02673    2 ielekvskeyaagv.eaLkdvslkiekgeflfltGasGaGkttllklllgaekpsrGevevagedvarlrerelpllRrkigvvfqD 87  
                   +e+++vs++y ++   aL+d+s+ki +g+ + ++G+ GaGk+++   l+   + ++G++ +++ d+++l  +++    r ++++ qD
  MMETSP1061-20121228|44421_1 1235 LEFRNVSLRYRTELpLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVR--GRGMSIIPQD 1319
                   79*********876269************************************************9998766653..2667777666 PP

  == domain 3    score: 30.0 bits;  conditional E-value: 1.2e-09
    TIGR02673  127 ledkakalpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkelnkrGttvivathdee 198 
                   l+ k ++  +++s Ge+q   +aRa++++P++l+ De t  +D e+ + i ++l++   + tt++  +h  +
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPN-TTLVTIAHRLN 1455
                   67788888999*************************************999999876655.45555555544 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.4   0.0   1.9e-17   1.3e-15      16     219 ..     585     801 ..     572     808 .. 0.75
   2 !   18.2   0.0   4.4e-06    0.0003      14      70 ..    1250    1306 ..    1235    1321 .. 0.83
   3 !   29.2   0.0     2e-09   1.3e-07     129     220 ..    1394    1482 ..    1384    1495 .. 0.88

  Alignments for each domain:
  == domain 1    score: 55.4 bits;  conditional E-value: 1.9e-17
    TIGR00968  16 lddvdlevktGslvallGpsGsGkstllrvi....aGlekpds.GrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir......kkdkakikakveellelvqleklgdrypsqlsGGqrqrvalaralavep..qvllldepfgaldakvrkelrawlrklhdev.kvtt.vfvthdqeeal.evadrivvlekGkieqvgsaeevy 219
                  + + d+e+++G+++ + Gp GsGkstll  i      le++ s   + l  + v  +  ++ +i +  q+  ++  l++r+ni fG +          d+ + +  +++l    +l ++g+r    lsGGqrqrv+lara   +p    ++ld+pf+ald+   k + + l    d + k ++ ++vth  +       d++ ++ +G+ e +gs ee+ 
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLLNGIldeaEALERKLSmSSLPLPKETVPPMVEKNGRISYAPQDPFIL-NLSLRENIVFGSDFDpvrynrVLDACALRPDIKQL-GGSDLVQIGERG-VTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGPDALlKESAvLLVTHASHFIShRAVDKVLLMVNGRNEFLGSWEELT 801
                  56789***********************9872332346655441566777888889999999*****9997655.79*********997744333223344445555444.345677788875.68******************965689**********9988877777766666542334415799998865515679**************999876 PP

  == domain 2    score: 18.2 bits;  conditional E-value: 4.4e-06
    TIGR00968   14 qalddvdlevktGslvallGpsGsGkstllrviaGlekpdsGrilleGrdvtrvkvr 70  
                    al+d++++++ G+  +++G +G+Gks++  ++  l + +sG ill+  d t + + 
  MMETSP1061-20121228|44421_1 1250 LALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLS 1306
                   589***********************************************9987544 PP

  == domain 3    score: 29.2 bits;  conditional E-value: 2e-09
    TIGR00968  129 sqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqeealevadrivvlekGkieqvgsaeevyd 220 
                   s++s G+rq + laral  +p+vl+lde  +++d +    +++ lr    +   t v ++h  +  ++  d + v++ G+  + ++++++  
  MMETSP1061-20121228|44421_1 1394 SNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNT--TLVTIAHRLNTIMDY-DCVLVMDAGRAAEFDAPAKLLA 1482
                   67899*********************************99**9999988765..567789999999996.99**************998865 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   0.0     1e-13     7e-12      19     224 ..     587     805 ..     580     815 .. 0.79
   2 !   20.9   0.0   6.4e-07   4.3e-05       2      66 ..    1235    1301 ..    1234    1320 .. 0.87
   3 !   37.9   0.0   4.2e-12   2.8e-10     122     222 ..    1385    1483 ..    1375    1493 .. 0.86

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1e-13
    TIGR03864  19 dvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlrrapkeal.arlGvvfq..qstlDldlsveqnlryhaaLhGlsraeaeer..ieealarlglae..raeekvreLnGGhrrrveiarallheP..klLLlDeatvGLDiesraalveevre..lvreeglsvLWathlvdeve..aedrlvvlhkGkvlaqGaaaelaaead 224
                  + +++++kge++++ Gp G+GkstL++ +    ea e ++++  l l ++++  + ++ G +    q  + l+ls+++n+ + ++   +  +++ +   ++  +++lg ++  +  e+  +L+GG+r+rv +ara   +P  + ++lD++   LD  + + + e++ +   +  ++ +vL  th  + ++  a d+++++ +G+  + G+ +el++ +d
  MMETSP1061-20121228|44421_1 587 SFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMvEKNGRISYapQDPFILNLSLRENIVFGSDFDPVRYNRVLDAcaLRPDIKQLGGSDlvQIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAgpDALLKESAVLLVTHASHFIShrAVDKVLLMVNGRNEFLGSWEELTQLND 805
                  6789***********************999999999***********998876541566755331255677****************9987777665115566777766662244577789*******************7679**************9999888754224445677788888887777611569*****************9998666 PP

  == domain 2    score: 20.9 bits;  conditional E-value: 6.4e-07
    TIGR03864    2 leveglsfaygkr..ralddvsltvakgefvaLLGpnGaGkstLfslltrLyeakegeikvaGldlr 66  
                   le +++s +y ++   al+d+s++++ g+ + ++G  GaGks +   l rL+e ++g+i +  +dl+
  MMETSP1061-20121228|44421_1 1235 LEFRNVSLRYRTElpLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLT 1301
                   667788888877633699****************************************998887776 PP

  == domain 3    score: 37.9 bits;  conditional E-value: 4.2e-12
    TIGR03864  122 laeraeekvreLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathlvdeveaedrlvvlhkGkvlaqGaaaelaae 222 
                   l+ + ee   + + G+r+ +++arall +Pk+L+lDeat+ +D e+ a +++++r+   ++ l  +   h ++ + + d ++v++ G+ +   a+a+l a+
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTL--VTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLAD 1483
                   66677777788999*****************************************99966655..4568*******************9988888887765 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.6e-11   1.1e-09      17     214 ..     585     790 ..     575     800 .. 0.73
   2 !   62.8   0.4   9.3e-20   6.2e-18      14     225 ..    1249    1481 ..    1235    1485 .. 0.80

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.6e-11
    TIGR03873  17 vddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadl..kal.srrararrvalveqdsdaevplsvrdvvalGri..PhrslfaadsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqeP..klllldePtnhldvsa.q..lellalvrelaaegvtvvvalhdlnl.aasvcdhvvvldgGr 214
                  v   d +  +G++  + GP GsGkstll+ +    ++ + ++++++  l  +++ +  ++  r++ + qd    ++ls r+ +++G    P r     d+ +      + l+  +l ++ +r + tlsGG+rqrv lara  ++P  + ++ld+P   ld  + +  +e l +  +   ++ +v++  h   + + +++d+v+++ +Gr
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLpkETVpPMVEKNGRISYAPQDP-FILNLSLRENIVFGSDfdPVRYNRVLDACALR-PDIKQLGGSDLVQIGERGV-TLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTgKlvFEQLIAGPDALLKESAVLLVTHASHFiSHRAVDKVLLMVNGR 790
                  6667888899*******************999988888889988887752233314567788999999985.679***********852255555555553322.2336788888999999986.9******************966789**********7541311333333333335556666666655431456778888888887 PP

  == domain 2    score: 62.8 bits;  conditional E-value: 9.3e-20
    TIGR03873   14 rlivddvdvtaPaGaltgllGPnGsGkstllrllaGllapdaGevdlagadlkals.rrararrvalveqd.................sdaevplsvrdvvalGriPhrslfaadsdeda.evvdralarvelssladrdl....stlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrelaaegvtvvvalhdlnlaasvcdhvvvldgGrvvaaGppaevl 225 
                    l ++d+  + PaG+  g++G  G+Gks +   l  l++ + G++ l+ +dl++l    +r r ++++ qd                  +++  l + d v +G   + +   + +++d  +  d a + +++++l + +l    s +s Gerq  +laral  +Pk+l+lde t  +d ++   + +++r+   +++t v   h ln  + + d v+v+d+Gr +    pa++l
  MMETSP1061-20121228|44421_1 1249 PLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGlSDVRGRGMSIIPQDpflaganvrecldpfeqRTDDEILEALDSVRMGPNGYNGNGNSTANDDGgDTGDSAPTPTSAKALLSTKLeeggSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTR-FPNTTLVTIAHRLNTIMDY-DCVLVMDAGRAAEFDAPAKLL 1481
                   56789999*******************************************99996246788888888776333332222222222112344568999***********987776666652567888899999998887763333689********************************************9.7889999999****98887.99********99888888877 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.5   0.0   5.5e-16   3.7e-14      16     197 ..     587     775 ..     574     786 .. 0.73
   2 !   20.3   0.0   9.5e-07   6.4e-05       6      64 ..    1242    1302 ..    1237    1319 .. 0.85
   3 !   28.1   0.0     4e-09   2.7e-07     124     199 ..    1385    1459 ..    1377    1466 .. 0.82

  Alignments for each domain:
  == domain 1    score: 50.5 bits;  conditional E-value: 5.5e-16
    TIGR03608  16 klslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekaklksk.kaskllreklgylFqnfaLlenetveenlelalklkkk..skkekekkkkevlekvgl..ekklkkkiyelsgGekqRvalarillkes..elilADEPtgsLDkknreevlellkelke...egktiiivtHdpeva 197
                  ++++++ kGe++ ++G  GsGKstlLn  g l++ +  +  l+ ++ +  k++   +  +  +++y  q+  +l n +++en+  +  +     ++     ++   ++++g     ++ ++  +lsgG++qRv+lar+  k++  + i+ D+P ++LD+ + + v+e l    +   ++  +++vtH ++  
  MMETSP1061-20121228|44421_1 587 SFDFELRKGEIMVVCGPVGSGKSTLLN--GILDEAEALERKLSMSSLPLPKETvPPMVEKNGRISYAPQDPFIL-NLSLRENIVFGSDFDPVryNRVLDACALRPDIKQLGGsdLVQIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGPDallKESAVLLVTHASHFI 775
                  68899**********************..4455555555555555533333330344445568*******7555.799******9977765400444555566677888876322344567789*****************954478999*****************99764432226889999***87643 PP

  == domain 2    score: 20.3 bits;  conditional E-value: 9.5e-07
    TIGR03608    6 kkfkdk..eilkklslkiekGelvaivGesGsGKstlLnilgllekkdsgkvilegkekak 64  
                    +++++    l++ls+ki +G++  ivG+ G+GKs +   l +l + +sg+++l++ + ++
  MMETSP1061-20121228|44421_1 1242 LRYRTElpLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTT 1302
                   55555544689*******************************************9987555 PP

  == domain 3    score: 28.1 bits;  conditional E-value: 4e-09
    TIGR03608  124 lekklkkkiyelsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkeegktiiivtHdpevaek 199 
                   l++kl++   ++s Ge+q + lar+ll ++++++ DE t+s+D ++ + + ++l+  +  ++t++ + H  +    
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLR-TRFPNTTLVTIAHRLNTIMD 1459
                   567778888899********************************99887777765.56788999999998766555 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.7   0.0      0.16        11      27      49 ..     591     613 ..     583     627 .. 0.87
   2 !   21.9   0.0   2.4e-07   1.6e-05     140     219 ..     707     791 ..     697     836 .. 0.79
   3 !   30.8   0.0   4.8e-10   3.2e-08      20      77 ..    1251    1308 ..    1239    1319 .. 0.91
   4 !   41.0   0.0   3.6e-13   2.4e-11     130     244 ..    1385    1496 ..    1379    1500 .. 0.92

  Alignments for each domain:
  == domain 1    score: 2.7 bits;  conditional E-value: 0.16
    TIGR02314  27 fvpkgqifgvigasgagkstlir 49 
                   + kg+i+ v g  g+gkstl+ 
  MMETSP1061-20121228|44421_1 591 ELRKGEIMVVCGPVGSGKSTLLN 613
                  5679*****************86 PP

  == domain 2    score: 21.9 bits;  conditional E-value: 2.4e-07
    TIGR02314 140 nlsggqkqrvaiaralasep..kvllcdeatsaldpattqsilellkeinrrl..gltillithemdvv.kricdevavidkgel 219
                   lsggq+qrv++ara   +p    ++ d+  sald  t + ++e l      l  + ++ll+th  + + +r  d+v ++ +g+ 
  MMETSP1061-20121228|44421_1 707 TLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGPDALlkESAVLLVTHASHFIsHRAVDKVLLMVNGRN 791
                  69****************994457899***************99776655444235689*****998662689999999998874 PP

  == domain 3    score: 30.8 bits;  conditional E-value: 4.8e-10
    TIGR02314   20 aldnvslfvpkgqifgvigasgagkstlircvnllekptsgavivdgkdlttlsnael 77  
                   al+++s+ +p+g+ +g++g +gagks++   +  l +  sg++++d +dlttl  +++
  MMETSP1061-20121228|44421_1 1251 ALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDV 1308
                   9**************************999999899999*************987775 PP

  == domain 4    score: 41.0 bits;  conditional E-value: 3.6e-13
    TIGR02314  130 lsdkkdsypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithemdvvkricdevavidkgeliekgtvseifshpktelakkfirst 244 
                   ls k +   sn+s g++q + +aral s+pkvl+ deat+++d  t   i ++l+   r  + t++ i+h ++ +    d+v v+d g+  e ++ ++++++ +  +  +++ st
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRT--RFPNTTLVTIAHRLNTIMD-YDCVLVMDAGRAAEFDAPAKLLADGNEGIFSQLVDST 1496
                   678889999*********************************************95..88999**********9987.69***************99999999888888888776 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.8   0.0   9.6e-16   6.5e-14      17     227 ..     589     808 ..     581     832 .. 0.76
   2 !   13.3   0.0   0.00012     0.008      12      60 ..    1251    1299 ..    1240    1309 .. 0.86
   3 !   34.8   0.0   3.3e-11   2.2e-09     126     223 ..    1390    1484 ..    1383    1499 .. 0.87

  Alignments for each domain:
  == domain 1    score: 49.8 bits;  conditional E-value: 9.6e-16
    TIGR02142  17 dlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppek.RrvgyvFqeArLFpHlsvrenLrYGlkraraeerriseekv....ielLgiehLle..RlpgkLsGGekqRvaigRAlLssP..eLLlmDePLaaLDekrkkeilPyLerlsael..kiPilyvsHsldeva.rladrvvvledGrvkaagkleevlaskdlsl 227
                  d+el   +++ + G  GsGk++l++ i     + e ++++    l   ++ +   +ek  r++y  q+  +   ls ren+++G     ++++r+ ++      i+ Lg + L++   +  +LsGG +qRv+++RA   +P    +++D+P +aLD+   k ++  L    + l  +  +l+v H  + +  r  d+v+++ +Gr +  g+ ee+++ +d + 
  MMETSP1061-20121228|44421_1 589 DFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPL--PKETVPPMVEKnGRISYAPQDPFIL-NLSLRENIVFGSDFDPVRYNRVLDACAlrpdIKQLGGSDLVQigERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGPDALlkESAVLLVTHASHFIShRAVDKVLLMVNGRNEFLGSWEELTQLNDEEH 808
                  56777779999**************99766666666666666555..45555544444169*******8765.7************999999998777542333678999999972234569*******************66689***********99998888776555444224568999999999872566*******************998776553 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 0.00012
    TIGR02142   12 feLdvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgev 60  
                      d+++++p+   +++ Gr G+Gk+s+  ++  L+  ++g i ld+  
  MMETSP1061-20121228|44421_1 1251 ALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVD 1299
                   555899*****9********************************99865 PP

  == domain 3    score: 34.8 bits;  conditional E-value: 3.3e-11
    TIGR02142  126 eRlpgkLsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHsldevarladrvvvledGrvkaagkleevlask 223 
                   e   ++ s Ge+q   ++RAlLs+P++L++De  a++D +  + i   L+    ++   ++ ++H l+ +    d v+v+++Gr + + +++++la+ 
  MMETSP1061-20121228|44421_1 1390 EEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNT--TLVTIAHRLNTIMDY-DCVLVMDAGRAAEFDAPAKLLADG 1484
                   55667899********************************9999988887655554..56899******9985.9***********999999998876 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   4.4e-19     3e-17      24     217 ..     588     789 ..     576     792 .. 0.84
   2 ?    1.5   0.1       0.6        40      21      70 ..    1252    1301 ..    1241    1315 .. 0.88
   3 !   31.8   0.0   3.3e-10   2.2e-08     130     218 ..    1384    1470 ..    1370    1472 .. 0.84

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 4.4e-19
    TIGR02982  24 inleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmalelkeklsak.eakakaeelleavglee..rldykpedlsgGqkqrvaiaralvarP..klvladePtaaldkksgrevvellqk..lareqgttillvthdnrild..vadrivkmedG 217
                   ++e+++gei+++ Gp GsGk tll+ i    ++ e +l++ +  l + +   +v+   +i y  q   +l  l  ++n+ ++ ++ +   ++   ++  +  ++++g  +  ++  +   lsgGq+qrv++ara  ++P  + ++ d+P +ald+ +g+ v e l     a  + +++llvth +  +     d+++ m +G
  MMETSP1061-20121228|44421_1 588 FDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMVEKNGRISYAPQDPFIL-NLSLRENIVFGSDFDPVRYNRvLDACALRPDIKQLGGSDlvQIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAgpDALLKESAVLLVTHASHFIShrAVDKVLLMVNG 789
                  57899*********************9999999999*****************************998776.5899**********98743330333344556788887776677788999******************96668999***************996654237999**********9886642245777777776 PP

  == domain 2    score: 1.5 bits;  conditional E-value: 0.6
    TIGR02982   21 lfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelk 70  
                   l+d++++i +g    + G +G+Gk  +   +  l ++ +G++ + + +l+
  MMETSP1061-20121228|44421_1 1252 LNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLT 1301
                   88999**********************99999999999999987777665 PP

  == domain 3    score: 31.8 bits;  conditional E-value: 3.3e-10
    TIGR02982  130 gleerldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthd.nrildvadrivkmedGk 218 
                   +l  +l+   +++s G +q + +aral ++Pk+++ de ta++d ++   + ++l+++    +tt++ ++h  n i+d  d ++ m+ G+
  MMETSP1061-20121228|44421_1 1384 LLSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTR--FPNTTLVTIAHRlNTIMD-YDCVLVMDAGR 1470
                   67889999999************************************99999888764..566777777776356666.47888999886 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.3   0.0   1.9e-14   1.3e-12      28     229 ..     589     802 ..     582     813 .. 0.75
   2 !   19.2   0.0   1.6e-06   0.00011      14      76 ..    1240    1304 ..    1230    1322 .. 0.83
   3 !   28.5   0.0   2.5e-09   1.7e-07     138     237 ..    1395    1490 ..    1382    1510 .. 0.87

  Alignments for each domain:
  == domain 1    score: 45.3 bits;  conditional E-value: 1.9e-14
    TIGR03258  28 sleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlth..lppykrnlall.v.qnyalfphlkveenvafG.....lrarkqskaliaervadalklvqlsdaaa..rlpaqlsGGqqqrvalaralvvrp..dvllldeplsaldaqlrasvveelkal.hrelpeltvlyvthdrdea.lvladkillmkeGslialGetralyd 229
                   +e+  Ge++ + G+ GsGk+tll  +    +a   +l ++   l +  +pp   + + + +  +  +   l + en+ fG     +   + ++ l a  +   +k ++ sd  +  +    lsGGq+qrv+lara   +p    ++ld+p+sald+   + v e+l a     l e +vl vth  +       dk+llm +G+   lG  ++l +
  MMETSP1061-20121228|44421_1 589 DFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKetVPPMVEKNGRIsYaPQDPFILNLSLRENIVFGsdfdpV---RYNRVLDACALRPDIKQLGGSDLVQigERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGpDALLKESAVLLVTHASHFIsHRAVDKVLLMVNGRNEFLGSWEELTQ 802
                  568899**********************9999999****999988542278875544443131233456789*********443333...44444444444555565555555431134678*****************9955689**************999999877615567899*******9876514567**********998888777665 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.6e-06
    TIGR03258   14 lrvaygar..vvlddlsleieaGellallGksGsGkttllravaGfvkadGGrllvadrdlthlp 76  
                   ++++y ++    l+dls++i aG+   ++G++G+Gk+++  a+  +v+ + G +l+ + dlt l 
  MMETSP1061-20121228|44421_1 1240 VSLRYRTElpLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLG 1304
                   5556665522689************************************************9874 PP

  == domain 3    score: 28.5 bits;  conditional E-value: 2.5e-09
    TIGR03258  138 qlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrdealvladkillmkeGslialGetralydapadrfva 237 
                   ++s G +q + laral  +p+vl+lde  +++d +  a ++   k l  ++p+ t++ ++h r ++++  d +l+m  G+ +++  + +l     ++  +
  MMETSP1061-20121228|44421_1 1395 NFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQ---KMLRTRFPNTTLVTIAH-RLNTIMDYDCVLVMDAGRAAEFDAPAKLLADGNEGIFS 1490
                   6799*******************************999887...56789***********9.56778889**************9999998777776655 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.0   0.0    0.0003      0.02       9      36 ..     585     612 ..     581     617 .. 0.90
   2 !   32.7   0.0   1.5e-10     1e-08     116     289 ..     700     879 ..     689     886 .. 0.76
   3 !   14.6   0.0   4.8e-05    0.0032       8      74 ..    1251    1319 ..    1246    1325 .. 0.86
   4 !   33.6   0.0   7.8e-11   5.3e-09     123     213 ..    1394    1482 ..    1384    1517 .. 0.80

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.0003
    TIGR01188   9 vdgvnlkveegevfglLGPnGAGKttti 36 
                  v + ++++++ge++ + GP G GK+t++
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLL 612
                  67899*********************97 PP

  == domain 2    score: 32.7 bits;  conditional E-value: 1.5e-10
    TIGR01188 116 eaadkkvktysgGmrrrlelaasliaqP..evlfLDEPtiGLDprtrraiwd.lieelkke..gvtilltthyleead.kladrvaiidkGkiiaedtpeeLKervgkevveverrdikelkkevsllaaelteslleleavevdsdkvklkve...eadetvkeileavkrnkikissislk 289
                  +  ++ v t+sgG+r+r++la++  +qP  + + LD+P + LD+ t + + + li+       + ++ll th  + +  +  d+v ++ +G+    ++ eeL +  ++e+ e +rr++ +++ ++++ + e +++ +  + +e+ds  v  +++   ++ +  ++++++ + +  ki++ +l+
  MMETSP1061-20121228|44421_1 700 QIGERGV-TLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEqLIAGPDALlkESAVLLVTHASHFIShRAVDKVLLMVNGRNEFLGSWEELTQLNDEEHDEQTRRAVDHIQSQIRENTDESNKDGNGDKLAERDS--VGSYTNnesKGRNSQHQVADSSSSKTNKIMQKELR 879
                  5555555.79******************666899************999886155543332448999999999887651567********************************************99999999885444333333..33333312355556777777777777777666555 PP

  == domain 3    score: 14.6 bits;  conditional E-value: 4.8e-05
    TIGR01188    8 AvdgvnlkveegevfglLGPnGAGKtttikmLttllkPdsGtarvaGyDvvrep.devR.rsigvvpqk 74  
                   A++++++k+++g+  g++G  GAGK+ +   L  l++ +sG+  +   D++    ++vR r ++++pq+
  MMETSP1061-20121228|44421_1 1251 ALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGlSDVRgRGMSIIPQD 1319
                   899***************************************999999988754147774457777775 PP

  == domain 4    score: 33.6 bits;  conditional E-value: 7.8e-11
    TIGR01188  123 ktysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkkegvtilltthyleeadkladrvaiidkGkiiaedtpeeLKe 213 
                    ++s G r+ l+la++l++qP+vl LDE t  +D +t + i ++++     ++t++  +h l+ +  + d v ++d G+ + +d+p +L +
  MMETSP1061-20121228|44421_1 1394 SNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTR-FPNTTLVTIAHRLNTIMDY-DCVLVMDAGRAAEFDAPAKLLA 1482
                   579**************************************9999864.3466777779999998776.99***************99975 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.1   4.7e-14   3.1e-12       7     244 ..     583     827 ..     578     847 .. 0.83
   2 !   22.1   0.0   2.2e-07   1.5e-05       5      71 ..    1248    1311 ..    1245    1322 .. 0.85
   3 !   21.9   0.0   2.6e-07   1.7e-05     129     226 ..    1395    1489 ..    1387    1511 .. 0.85

  Alignments for each domain:
  == domain 1    score: 44.1 bits;  conditional E-value: 4.7e-14
    TIGR01186   7 lgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglellkideqerkeka..lealklvdleeyed..ryPdelsGGmqqrvGlaralaaeP..dlllmdeafsaldPlirdelqdelvklqkklqk..tivfithdlde.alrlgdrivilkaGeivqvGtPdeilrnPaneyveefiekvdlsqvldveri 244
                   +v + d+e+ +Gei+v+ G+ GsGkstl+  +    e  + k+ +    + +     + e +  +i++  q+  +    ++ +ni +g ++  +  ++  +    +  +k+++  + ++  +    lsGG++qrv lara   +P    +++d++fsald  + + + ++l+   + l k  +++++th     + r  d++ ++ +G    +G+ +e+ +   +e+ e+  + vd +q++  e+ 
  MMETSP1061-20121228|44421_1 583 FTVGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMVE-KNGRISYAPQDPFI-LNLSLRENIVFGSDFDPVRYNRVLDACalRPDIKQLGGSDLVQigERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGPDALLKesAVLLVTHASHFiSHRAVDKVLLMVNGRNEFLGSWEELTQLNDEEHDEQTRRAVDHIQSQIRENT 827
                  578899***********************99999999999999999999999888777744.5678****999655.4789***********99987766554222567899888777652245679******************966689*********************9988876542378999998764267999********************999999999999999999998755555 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 2.2e-07
    TIGR01186    5 lklgvndvdleieeGeiiviiGlsGsGkstlvrllnrliePtaGkilidGediaeisdaelrevrrk 71  
                   l l++nd++++i  G    i+G +G+Gks++   l rl+e  +G il+d +d++ +      +vr +
  MMETSP1061-20121228|44421_1 1248 LPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGL---SDVRGR 1311
                   56899*********************************************99987654...444545 PP

  == domain 3    score: 21.9 bits;  conditional E-value: 2.6e-07
    TIGR01186  129 elsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithdldealrlgdrivilkaGeivqvGtPdeilrnPaneyv 226 
                   ++s G +q + laral  +P++l++dea +++d  +   +q+ l    +  + t+v i+h l+  +   d + ++ aG      +P ++l +  +   
  MMETSP1061-20121228|44421_1 1395 NFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRT--RFPNTTLVTIAHRLNTIMD-YDCVLVMDAGRAAEFDAPAKLLADGNEGIF 1489
                   6799********************************9999987765..456789********98887.599***********9999999987666555 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.7   0.0   7.9e-12   5.3e-10      17     244 ..     586     810 ..     573     820 .. 0.69
   2 !   15.5   0.0   2.3e-05    0.0016       3      64 ..    1237    1300 ..    1235    1318 .. 0.84
   3 !   26.6   0.0     1e-08   6.8e-07     136     237 ..    1385    1483 ..    1382    1493 .. 0.88

  Alignments for each domain:
  == domain 1    score: 36.7 bits;  conditional E-value: 7.9e-12
    TIGR03005  17 dglelevaaGekvaliGpsGsGkstilr.ilmtlet....ideGsikvegeqlyhmkgrkGklvpad.ekhlrkvrekiGmvfq.sfnlfphktvldnvteapvlvkGvaraeaekravelldmvGladkadalpaqlsGGqkqrvaiaralalrp..kvllfdevtsaldpelveevlnvlrr..lasetdltmllvthemgf.arefadrvlffdkGkiveeGkpdeifrkpkeertr 244
                    +++e+ +Ge + + Gp GsGkst+l  il   e+    ++  s+ +  e++  m  ++G++  a  +  + ++  +  +vf   f+   ++ vld  ++ p     +       + +   d+v ++++     + lsGGq+qrv++ara   +p    +++d++ sald    + v++ l     a  ++ ++llvth   f ++   d+vl++ +G+    G  +e+ +   ee  +
  MMETSP1061-20121228|44421_1 586 GSFDFELRKGEIMVVCGPVGSGKSTLLNgILDEAEAlerkLSMSSLPLPKETVPPMVEKNGRISYAPqDPFILNLSLRENIVFGsDFDPVRYNRVLDACALRPD----I-------KQLGGSDLVQIGER----GVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAgpDALLKESAVLLVTHASHFiSHRAVDKVLLMVNGRNEFLGSWEELTQLNDEEHDE 810
                  578999********************973555444400024556777778888888888888766641345555555555666414666666666666665552....1.......12233456666665....689***************99995558999********876666655444311344566789*******99457788**********99999999987766555433 PP

  == domain 2    score: 15.5 bits;  conditional E-value: 2.3e-05
    TIGR03005    3 isdvtkrfge.l.tvldglelevaaGekvaliGpsGsGkstilrilmtletideGsikvegeql 64  
                   +++v+ r+ + l   l++l++++ aG+   ++G +G+Gks+i   l+ l +i+ Gsi ++   l
  MMETSP1061-20121228|44421_1 1237 FRNVSLRYRTeLpLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDL 1300
                   66666666431324799****************************************9987555 PP

  == domain 3    score: 26.6 bits;  conditional E-value: 1e-08
    TIGR03005  136 ladkadalpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthemgfarefadrvlffdkGkiveeGkpdeifrk 237 
                   l+ k ++  +++s G++q + +aral  +pkvl++de+t+++d e    + ++lr      + t++ ++h+++   ++ d vl +d G+ +e  +p +++ +
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFP--NTTLVTIAHRLNTIMDY-DCVLVMDAGRAAEFDAPAKLLAD 1483
                   567888888999********************************998888888887655..5688899*******998.99*************99998765 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.6   0.0      0.03         2      30      57 ..     588     615 ..     562     636 .. 0.86
   2 !   25.5   0.0   2.6e-08   1.8e-06     149     228 ..     706     790 ..     673     811 .. 0.85
   3 !   21.7   0.0   3.9e-07   2.6e-05      15      96 ..    1240    1319 ..    1233    1333 .. 0.81
   4 !   31.6   0.0   3.5e-10   2.4e-08     144     235 ..    1389    1477 ..    1381    1488 .. 0.84

  Alignments for each domain:
  == domain 1    score: 5.6 bits;  conditional E-value: 0.03
    TIGR02769  30 vslsleeGetvallGrsGaGkstlarll 57 
                   +++l++Ge + + G  G+Gkstl   +
  MMETSP1061-20121228|44421_1 588 FDFELRKGEIMVVCGPVGSGKSTLLNGI 615
                  67899******************97655 PP

  == domain 2    score: 25.5 bits;  conditional E-value: 2.6e-08
    TIGR02769 149 rqlsGGqlqriniaralaveP..klivldeavsnldlvlqasilellkklkqe..fGlaylfithdlrlv.qkfaqrvlvldeGq 228
                    lsGGq qr+++ara   +P    i+ld+  s ld      ++e+l +  ++     a+l++th  + + ++  ++vl++ +G+
  MMETSP1061-20121228|44421_1 706 VTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGPDAllKESAVLLVTHASHFIsHRAVDKVLLMVNGR 790
                  579**************99995568***************99999997755542235699*****99876257789*****9997 PP

  == domain 3    score: 21.7 bits;  conditional E-value: 3.9e-07
    TIGR02769   15 ggllgkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlekPakGevsfrGqdlakldrkqrkafrrdvqlvfqd 96  
                    +l  + +    l+++s+++ +G++ +++Gr+GaGks ++  l  l + ++G++    +dl+ l  ++ +   r + ++ qd
  MMETSP1061-20121228|44421_1 1240 VSLRYRTELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRG--RGMSIIPQD 1319
                   3444444455679*************************************************999888774..666666666 PP

  == domain 4    score: 31.6 bits;  conditional E-value: 3.5e-10
    TIGR02769  144 ldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqef.GlaylfithdlrlvqkfaqrvlvldeGqiveeikv 235 
                   l+   +++s G  q +n+aral  +Pk++vldea +++d    a i ++l+    +f  ++ + i+h l+ +  + + vlv+d G+  e    
  MMETSP1061-20121228|44421_1 1389 LEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRT---RFpNTTLVTIAHRLNTIMDY-DCVLVMDAGRAAEFDAP 1477
                   55566789***********************************999888764...442578899******99987.789******99886555 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0     4e-05    0.0027      25      54 ..     586     615 ..     563     625 .. 0.88
   2 !   18.0   0.0   4.9e-06   0.00033     149     193 ..     707     754 ..     703     786 .. 0.74
   3 !   20.3   0.0   9.8e-07   6.6e-05      23      69 ..    1251    1297 ..    1242    1314 .. 0.89
   4 !   29.1   0.0     2e-09   1.4e-07     148     208 ..    1394    1453 ..    1384    1467 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 4e-05
    TIGR02324  25 kevsleveaGelvalsGksGaGkstllksl 54 
                   + ++e+++Ge++++ G+ G+Gkstll  +
  MMETSP1061-20121228|44421_1 586 GSFDFELRKGEIMVVCGPVGSGKSTLLNGI 615
                  567899*********************877 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 4.9e-06
    TIGR02324 149 tfsGGekqRvniaraliadrPi...LLLdePtasLdaanrkvvve.lik 193
                  t sGG +qRv +ara  + +P+   ++Ld+P ++Ld+ + k v e li+
  MMETSP1061-20121228|44421_1 707 TLSGGQRQRVSLARAAYK-QPLsscIILDDPFSALDSGTGKLVFEqLIA 754
                  99**************99.7743449************99999872454 PP

  == domain 3    score: 20.3 bits;  conditional E-value: 9.8e-07
    TIGR02324   23 vlkevsleveaGelvalsGksGaGkstllkslyanYlpesgrilvrh 69  
                   +l+++s+++ aG+   + G++GaGks++  +l++   +esg+il+ +
  MMETSP1061-20121228|44421_1 1251 ALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDN 1297
                   6899**************************************99866 PP

  == domain 4    score: 29.1 bits;  conditional E-value: 2e-09
    TIGR02324  148 atfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikeakargaaligifhd 208 
                   + fs Ge+q +n+aral+++  +L+Lde tas+d  + + + +++ +++   ++l++i h 
  MMETSP1061-20121228|44421_1 1394 SNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKML-RTRFPNTTLVTIAHR 1453
                   68*****************777999********999997655555.56788899****996 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   42.7   0.0   1.5e-13     1e-11      16     188 ..     585     773 ..     577     784 .. 0.72
   2 !   17.4   0.0   8.5e-06   0.00057      12      65 ..    1248    1301 ..    1235    1349 .. 0.87
   3 !   20.1   0.0   1.3e-06   8.6e-05     127     182 ..    1395    1450 ..    1376    1459 .. 0.86

  Alignments for each domain:
  == domain 1    score: 42.7 bits;  conditional E-value: 1.5e-13
    TIGR01189  16 leglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkelaeqrd....elaeellylgHldglKaeLsalEnLkfyaallqseqktveea......lekvgLsgledlpv..aqLsAGqkrRlalarLllska..plWiLDEPttalDkeg.vellaella..aHlargGivllathqdl 188
                  + + +fel  Ge++vv Gp G+GK+tLL  +    ++ + ++++++ +l +++     e++ ++ y+        +Ls +En+ f +++     + v +a      ++++g s+l ++     +Ls Gq++R++lar   ++      iLD+P+ alD  +   ++++l+a  + l +  +vll th + 
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVppmvEKNGRISYAPQD-PFILNLSLRENIVFGSDFDPVRYNRVLDAcalrpdIKQLGGSDLVQIGErgVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTgKLVFEQLIAgpDALLKESAVLLVTHASH 773
                  56789***********************988888888888888888777666531111344568887655.55678*********999887655556555111111344554555444331148*************99887433679**********97626667777763356889999999999875 PP

  == domain 2    score: 17.4 bits;  conditional E-value: 8.5e-06
    TIGR01189   12 ervlleglsfelaaGealvveGpnGiGKttLLRilaGLlkpesGevelndkela 65  
                       l++lsf++ aG+   ++G+ G+GK+++   l  L++ esG++ l++ +l+
  MMETSP1061-20121228|44421_1 1248 LPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLT 1301
                   4456899****************************************9977655 PP

  == domain 3    score: 20.1 bits;  conditional E-value: 1.3e-06
    TIGR01189  127 qLsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivll 182 
                   + s G ++ l lar lls+ ++ +LDE t+++D e+ + ++++l+    +  +v +
  MMETSP1061-20121228|44421_1 1395 NFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTI 1450
                   6899**************************************99987776665555 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.6   0.0    0.0017      0.11       2      37 ..     585     620 ..     584     660 .. 0.78
   2 !   22.1   0.0   2.6e-07   1.8e-05     125     203 ..     707     790 ..     696     814 .. 0.87
   3 !   26.6   0.0   1.1e-08   7.3e-07       3      74 ..    1253    1323 ..    1251    1346 .. 0.91
   4 !   18.0   0.0   4.7e-06   0.00031     126     225 ..    1396    1492 ..    1387    1496 .. 0.85

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 0.0017
    TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglld 37 
                  v   +++l++g+++ + G  GsGks+   +il+  +
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAE 620
                  56789*********************9999997554 PP

  == domain 2    score: 22.1 bits;  conditional E-value: 2.6e-07
    TIGR02770 125 elsGGmlqRvmialalllea..plliaDePttdlDvvvqaevLklleelre..krglgillithDlgvvaela.devavmekGk 203
                   lsGG  qRv +a a   ++  + +i D+P ++lD  + + v ++l    +   ++ ++ll+th    +++ a d+v++m +G+
  MMETSP1061-20121228|44421_1 707 TLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGPDalLKESAVLLVTHASHFISHRAvDKVLLMVNGR 790
                  69*************999864479********************99765441257899**********99765499******98 PP

  == domain 3    score: 26.6 bits;  conditional E-value: 1.1e-08
    TIGR02770    3 qdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaal...alrgreialilqnPrsa 74  
                   +d+++++  gk +++vG  G+Gks  ++a+  l +      sG+illd+ +l++l    +rgr +++i q+P  a
  MMETSP1061-20121228|44421_1 1253 NDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVE----IESGSILLDNVDLTTLglsDVRGRGMSIIPQDPFLA 1323
                   79*****************************9998....779***********999999*************866 PP

  == domain 4    score: 18.0 bits;  conditional E-value: 4.7e-06
    TIGR02770  126 lsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithDlgvvaeladevavmekGkivergtvkelfqePkhettrkL 225 
                   +s G  q + +a all+++ +l+ De t+ +D  + a + k+l++  +  +++++ i+h l+ +    d v+vm++G+  e   + +l+ + ++ +  +L
  MMETSP1061-20121228|44421_1 1396 FSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRT--RFPNTTLVTIAHRLNTIMDY-DCVLVMDAGRAAEFDAPAKLLADGNEGIFSQL 1492
                   5667778889999************************99999986..45678999********9986.99***********9999988877666655555 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.6   0.0   2.8e-16   1.9e-14      16     208 ..     587     792 ..     578     796 .. 0.75
   2 !   13.1   0.0   0.00017     0.011       5      66 ..    1239    1304 ..    1235    1326 .. 0.76
   3 !   13.5   0.0   0.00013    0.0086     126     208 ..    1393    1472 ..    1381    1476 .. 0.78

  Alignments for each domain:
  == domain 1    score: 51.6 bits;  conditional E-value: 2.8e-16
    TIGR01277  16 efdlsveaGervailGesGaGkstllnliaGflepasGeikvndkd..htrsapy.erp..vsmlfqennlfahltvrqniglG..lkpglklnavqkekvedvarqvGiadyle..rlpeelsGGqrqrvalarclvre..kpillldepfsaldpklreeml.alvk.kladekkltlllvthslsda.aaiasqvvvvedGkik 208
                   fd+++ +Ge++ + G+ G+Gkstlln i    e  + ++ +      + +++p  e+   +s   q+  +   l++r+ni +G  ++p      ++   ++   +q+G +d+++       lsGGqrqrv+lar   ++     ++ld+pfsald    + ++  l++   a  k+ ++llvth  + +  + +++v+++ +G+ +
  MMETSP1061-20121228|44421_1 587 SFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPlpKETVPPMvEKNgrISYAPQDP-FILNLSLRENIVFGsdFDPVRYNRVLDACALRPDIKQLGGSDLVQigERGVTLSGGQRQRVSLARAAYKQplSSCIILDDPFSALDSGTGKLVFeQLIAgPDALLKESAVLLVTHASHFIsHRAVDKVLLMVNGRNE 792
                  699999***********************9999999999988875411455566424441155544443.4468*******999445677666678888999999*******9872234568*************988753345789*********86555444145541456679999******987652578999**99999965 PP

  == domain 2    score: 13.1 bits;  conditional E-value: 0.00017
    TIGR01277    5 dviyeykh.lple...fdlsveaGervailGesGaGkstllnliaGflepasGeikvndkdhtrsa 66  
                   +v ++y++ lpl    +++++ aG+   i+G +GaGks++   +  ++e  sG+i ++++d t++ 
  MMETSP1061-20121228|44421_1 1239 NVSLRYRTeLPLAlndLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLG 1304
                   66666665245541114567899*****************99999999*************99875 PP

  == domain 3    score: 13.5 bits;  conditional E-value: 0.00013
    TIGR01277  126 peelsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladek..kltlllvthslsdaaaiasqvvvvedGkik 208 
                     ++s G+rq + lar l+ +  +l+lde  +++d        a+++k+   +  + tl+ ++h+l+ ++   + v+v++ G+ +
  MMETSP1061-20121228|44421_1 1393 GSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGE----TDAFIQKMLRTRfpNTTLVTIAHRLNTIM-DYDCVLVMDAGRAA 1472
                   567899**************************99975....55666666555533789999999998665.46778888888765 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   7.1e-06   0.00047      18      49 ..     587     618 ..     581     627 .. 0.88
   2 !   20.8   0.0   6.6e-07   4.5e-05     144     240 ..     707     808 ..     691     811 .. 0.88
   3 !   20.7   0.0   7.5e-07     5e-05      16      87 ..    1252    1321 ..    1238    1350 .. 0.88
   4 !   17.0   0.0   9.5e-06   0.00064     139     224 ..    1387    1472 ..    1374    1483 .. 0.83

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 7.1e-06
    TIGR01978  18 glnlevkkGevhaimGpnGsGkstLskvlagh 49 
                  +++ e++kGe+ ++ Gp GsGkstL + +  +
  MMETSP1061-20121228|44421_1 587 SFDFELRKGEIMVVCGPVGSGKSTLLNGILDE 618
                  67899********************9988765 PP

  == domain 2    score: 20.8 bits;  conditional E-value: 6.6e-07
    TIGR01978 144 GfsGGekkrneilqlalleP..klaiLDeiDsGlDvDalkivaegvnklree...ekalliithyerllelikPdvvhvlldGrivksGdvelakelekkgy 240
                    sGG ++r  + + a  +P  + +iLD+  s lD  + k+v+e++    +    e+a+l++th ++++++ + d+v ++++Gr    G+ e +++l+++ +
  MMETSP1061-20121228|44421_1 707 TLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGPDAllkESAVLLVTHASHFISHRAVDKVLLMVNGRNEFLGSWEELTQLNDEEH 808
                  47*****************965689*******************9976555445499***************************999999988888887765 PP

  == domain 3    score: 20.7 bits;  conditional E-value: 7.5e-07
    TIGR01978   16 LkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqape 87  
                   L++l+ ++ +G+   i+G+ G+Gks ++ +l   + +e++sG+i l++ dl+ l   +   +G+ +  q p 
  MMETSP1061-20121228|44421_1 1252 LNDLSFKIPAGKSCGIVGRTGAGKSSITVALF--RLVEIESGSILLDNVDLTTLGLSDVRGRGMSIIPQDPF 1321
                   899**********************9988776..6799**************************99999885 PP

  == domain 4    score: 17.0 bits;  conditional E-value: 9.5e-06
    TIGR01978  139 RslneG...fsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklreeekalliithyerllelikPdvvhvlldGriv 224 
                    +l eG   fs Ge++  ++ + +l +Pk+ +LDe+ + +D ++   + +++ + r ++++l+ i+h  rl   +  d v v+ +Gr +
  MMETSP1061-20121228|44421_1 1387 TKLEEGgsnFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKML-RTRFPNTTLVTIAH--RLNTIMDYDCVLVMDAGRAA 1472
                   5555555559*******************************98877777665.66888888888888..67788899*********976 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.1       1.7   1.1e+02      80     179 ..     173     268 ..     137     326 .. 0.58
   2 !   40.3   0.0   4.3e-13   2.9e-11     466     616 ..     582     742 ..     527     759 .. 0.77
   3 !   35.7   0.0   1.1e-11   7.3e-10     469     653 ..    1252    1467 ..    1235    1474 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 1.7
    TIGR00954  80 kvllki....liprvfckellllilqavlLviRtllsvyvakldgqlvksivrrsprsFakellkwlliavpaslvnslik..ylekela..lsfrerltkylyskYl 179
                  k l ki    +ip  +c+    +++ ++ Lv+R +l  yv++l++  +++i+         + l w l++ ++++v+ l+k  y ++ ++  + +r+ +++ +y++ l
  MMETSP1061-20121228|44421_1 173 KALWKIatptFIPAGICELGSTILVSIMPLVVRRFL--YVIELES--EENIMG--------KGLTWALLLTTMTFVDGLLKqrYRHQSMKtgIALRSAIVNMVYKHVL 268
                  444444111145555663333444445557777764..5555544..233333........33556666666677776665223333332225566666666666655 PP

  == domain 2    score: 40.3 bits;  conditional E-value: 4.3e-13
    TIGR00954 466 dvlieeLsfevksGnhlLiiGPnGcGKsslfR.ilgelWPvyg.........glltkp....eegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavq..dWkdvLsgGekqRiamARlfyHkPk..favLDEctsAvsv 616
                  +  + +  fe+++G+ ++++GP G GKs l   il e   +           ++ t+p    ++g++ y Pq P++ + +lR+ i++    +            +++L+   L   +++ gg d vq  +    LsgG++qR+++AR  y +P    ++LD+  sA+  
  MMETSP1061-20121228|44421_1 582 SFTVGSFDFELRKGEIMVVCGPVGSGKSTLLNgILDEAEALERklsmsslplPKETVPpmveKNGRISYAPQDPFILNLSLRENIVFGSDFD--------PVRYNRVLDACALRPDIKQLGGSDLVQigERGVTLSGGQRQRVSLARAAYKQPLssCIILDDPFSALDS 742
                  4568899**********************8754999988887799999**995555542222789*********************976544........4456788999999988888888777763256678*******************7336799999999765 PP

  == domain 3    score: 35.7 bits;  conditional E-value: 1.1e-11
    TIGR00954  469 ieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg.............glltkpeegklFyvPqrPYmslgtlRdqiiYPdssedfkerglsdkdLeqiLeevkLedlleregg.........................wdavqdWkdvLsgGekqRiamARlfyHkPkfavLDEctsAvsvdvEdklyelakev..gitllsvshrksLwkyHeylLkld 653 
                   +++Lsf+++ G++  i+G  G GKss+   l  l  + +             g l+  +   +  +Pq P+++   +R+ +      + f++r  +d ++ + L+ v++     ++ g                            +++     s Ge+q +++AR +  +Pk  vLDE+t+ +  + +  + ++++    + tl++++hr   +  ++ +L +d
  MMETSP1061-20121228|44421_1 1252 LNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESgsilldnvdlttlG-LSDVRGRGMSIIPQDPFLAGANVRECL------DPFEQR--TDDEILEALDSVRMGPNGYNGNGnstanddggdtgdsaptptsakallSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRfpNTTLVTIAHRLNTIMDYDCVLVMD 1467
                   689************************99999999999889999999997533.34445567999*************964......445555..578888899****9987777777899********************96667899999******************************999999998888887643489********87776667788887 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.5   0.0   6.7e-11   4.5e-09      20     213 ..     585     791 ..     580     804 .. 0.75
   2 !   19.2   0.0   1.6e-06   0.00011      18      62 ..    1250    1294 ..    1234    1328 .. 0.84
   3 !   22.1   0.0     2e-07   1.3e-05     125     222 ..    1385    1480 ..    1377    1509 .. 0.74

  Alignments for each domain:
  == domain 1    score: 33.5 bits;  conditional E-value: 6.7e-11
    TIGR01288  20 vndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvparar....larakigvvpqfdnldreftvrenllvfgryfg.ls.treieevipsllefarles....kadvrvadlsggmkrrltlaralindp..qllildepttgldpharhliwerlrs...llargktilltthlme.eaerlcdrlcvleagrk 213
                  v  + f + +ge + + gp g+gkst+   +l  +   e k+++ + p p ++         +i   pq d + ++++ ren+ vfg  f  ++  r +++      ++ +l      +   r  +lsgg ++r++lara  ++p    +ild+p + ld  + +l++e+l +    l +  ++ll th     ++r +d++ ++ +gr+
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVppmvEKNGRISYAPQ-DPFILNLSLRENI-VFGSDFDpVRyNRVLDA-CALRPDIKQLGGsdlvQIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAgpdALLKESAVLLVTHASHfISHRAVDKVLLMVNGRN 791
                  66788999****************************999999998888877654111123456777777.88999*******6.89998863431455554.433445555544000134445678******************955589*********************764444667778888888765246799999988888876 PP

  == domain 2    score: 19.2 bits;  conditional E-value: 1.6e-06
    TIGR01288   18 vvvndlsftiaagecfgllgpngagkstiarlvlglispdegkit 62  
                   + +ndlsf i ag+  g++g  gagks+i+  ++ l+  + g i 
  MMETSP1061-20121228|44421_1 1250 LALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSIL 1294
                   468**********************************99999985 PP

  == domain 3    score: 22.1 bits;  conditional E-value: 2e-07
    TIGR01288  125 leskadvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllargktillt.thlmeeaerlcdrlcvleagrkiaegrpdal 222 
                   l +k +   +++s g ++ l laral+ +p++l+lde t+ +d  +  +i + lr+ +    t l+t +h ++      d + v++agr      p  l
  MMETSP1061-20121228|44421_1 1385 LSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPN--TTLVTiAHRLNTI-MDYDCVLVMDAGRAAEFDAPAKL 1480
                   6667777789999******************************************98765..4444404444332.22344556677776655555554 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.6   0.0   2.8e-13   1.9e-11      20     222 ..     585     800 ..     567     807 .. 0.66
   2 !   11.4   0.0   0.00044      0.03      17      72 ..    1249    1304 ..    1232    1319 .. 0.84
   3 !   22.0   0.0   2.7e-07   1.8e-05     133     225 ..    1394    1483 ..    1385    1508 .. 0.82

  Alignments for each domain:
  == domain 1    score: 41.6 bits;  conditional E-value: 2.8e-13
    TIGR03265  20 lkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrdi..trlppqkrdyGivfqsYa....LfPnltvaeniayGLknkklkreevaerveelLelvglsgse....ekyPgqlsGGqqqrvaLaralalsP..glLLLDePlsaLDakvrekLreel....kklqrklgvttimvthdqeeal.slaDrivvmnkgkieqvgtPeei 222
                  + + +++++kge++ + GP G Gk+tLL  i    ++ + ++ ++   +   ++pp     G +  sYa    +  nl ++eni +G     +  ++v +  +   ++ +l gs+          lsGGq+qrv+Lara   +P  + ++LD+P+saLD+   + + e l     +l ++   + ++vth          D++  m +g+ e +g+ ee+
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLpkETVPPMVEKNGRI--SYApqdpFILNLSLRENIVFGSDFDPVRYNRVLDACALRPDIKQLGGSDlvqiGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLiagpDALLKES--AVLLVTHASHFIShRAVDKVLLMVNGRNEFLGSWEEL 800
                  56789***********************988544344444455444444213467777667755..4442232557***********87776666666666655555555555441111233568***************99997679***********8654444333300003444433..3467888776543145588888888877777776665 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 0.00044
    TIGR03265   17 ftalkdislsvkkgelvclLGPsGCGkttLLriiaGLekqdaGaillggrditrlp 72  
                     al+d+s+++ +g    ++G  G Gk+++  ++  L + ++G+ill++ d+t+l 
  MMETSP1061-20121228|44421_1 1249 PLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLG 1304
                   4689************************************************9986 PP

  == domain 3    score: 22.0 bits;  conditional E-value: 2.7e-07
    TIGR03265  133 gqlsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdqeealslaDrivvmnkgkieqvgtPeeiYeq 225 
                   + +s G +q + Laral  +P++L+LDe  +++D    + +++    l+ ++  tt++    + + ++  D + vm++g+     +P+++  +
  MMETSP1061-20121228|44421_1 1394 SNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKM---LRTRFPNTTLVTIAHRLNTIMDYDCVLVMDAGRAAEFDAPAKLLAD 1483
                   57899******************************998887755...55677777776555555666668*************9999988765 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.0   0.0   0.00073     0.049     338     374 ..     585     621 ..     564     630 .. 0.86
   2 !   14.7   0.0   2.7e-05    0.0018     161     293 ..     707     848 ..     698     884 .. 0.60
   3 !   19.8   0.0     8e-07   5.4e-05     290     381 ..    1202    1295 ..    1194    1307 .. 0.80
   4 !   27.1   0.0     5e-09   3.3e-07     148     239 ..    1382    1474 ..    1374    1506 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.00073
    TIGR03719 338 iddlsfklpkggivGviGpnGaGkstlfklitgkekp 374
                  +  ++f+l kg i+ v Gp G+Gkstl++ i ++ + 
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEA 621
                  56789***********************988877655 PP

  == domain 2    score: 14.7 bits;  conditional E-value: 2.7e-05
    TIGR03719 161 klsGGekrrvalcrlllekP..dlllldePtnhldaesvaWl.ekflke.....ykGtvvavthdryfldnva.eWileldrGegipykgnysswleqkekrle.qeekeeaarkkalkkeleWvrsspkarqakskarlary 293
                  +lsGG+++rv+l+r   ++P    ++ld+P   ld+ + + + e+ ++       + +v++vth  +f+ + a + +l +  G+   + g + +  +  ++  + q  ++ ++ + +++++ +  ++  ++ +  ++  + +y
  MMETSP1061-20121228|44421_1 707 TLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVfEQLIAGpdallKESAVLLVTHASHFISHRAvDKVLLMVNGRN-EFLGSWEELTQLNDEEHDeQTRRAVDHIQSQIRENTDESNKDGNGDKLAERDSVGSY 848
                  6999999999999999999966789999999999999877651554443222223578999999999998754266777777764.466655554433333222022223333344444444444444444444444444444 PP

  == domain 3    score: 19.8 bits;  conditional E-value: 8e-07
    TIGR03719  290 laryeelaseesekkeetaeivippgerlGdkvievenlskafgdkl..liddlsfklpkggivGviGpnGaGkstlfklitgkekpdsGelki 381 
                   ++r + +a+  se   et++ + pp++   + ++e++n+s ++  +l   ++dlsfk+p+g   G++G  GaGks +   +    + +sG++ +
  MMETSP1061-20121228|44421_1 1202 IERVDAMAELPSEAPLETRKGYQPPSNWPVQGLLEFRNVSLRYRTELplALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILL 1295
                   55666667777777777777788888888888999*****999887532789***********************9988888888888888865 PP

  == domain 4    score: 27.1 bits;  conditional E-value: 5e-09
    TIGR03719  148 dalrlpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekflk.eykGt.vvavthdryfldnvaeWileldrGegipy 239 
                   +al   + +   +++s Ge++ + l+r ll++P +l+lde t  +d e+ a+++k+l+ +++ t +v ++h    +    + +l +d G++  +
  MMETSP1061-20121228|44421_1 1382 KALLSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRtRFPNTtLVTIAHRLNTI-MDYDCVLVMDAGRAAEF 1474
                   666666777777899******************************************7368765156666643222.22345677777776665 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.1   0.0   3.3e-17   2.2e-15      47     326 ..     591     876 ..     551     897 .. 0.75
   2 ?   -1.2   0.0       1.9   1.2e+02      41      71 ..    1252    1282 ..    1236    1297 .. 0.82
   3 !   18.5   0.0     2e-06   0.00013     166     245 ..    1395    1471 ..    1382    1481 .. 0.78

  Alignments for each domain:
  == domain 1    score: 54.1 bits;  conditional E-value: 3.3e-17
    TIGR00955  47 vaksGellAvlGsSGaGKtTLlnalafrse...kglkvsgdvllnGekve.akemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdP..ilLfcDEPTsGLDsfsaasvvkvLk...klaqkgktviltiHQPsselfelfdkiillaeGrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseeesretiekicdaeaksklsreveentnlasgke.......kklvkd 326
                  ++++Ge++ v G+ G+GK+TLln +    e   + l++ ++  l  e v    e + + +y  qd  fi  l+ re+++f + +   r +++     +    +++lg        ig  g   +lSgG+r+R++la  + ++P  + +++D+P s LDs + + v + L    +   k + v+l+ H       +  dk++l+ +Gr  +lGs ee++++ +e      +     d++++ ++++ ++ +++  +  k+ +++ ++++ ++  + +n +++ +       +k++++
  MMETSP1061-20121228|44421_1 591 ELRKGEIMVVCGPVGSGKSTLLNGILDEAEaleRKLSM-SSLPLPKETVPpMVEKNGRISYAPQD-PFILNLSLRENIVFGSDFDPVR-YNRVLDACALRPDIKQLGG--SDLVQIGERG--VTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIagpDALLKESAVLLVTHASHFISHRAVDKVLLMVNGRNEFLGSWEELTQLNDEEH--DEQTRRAVDHIQSQIRENTDESNKD-GNGDKLAERDSVGSYTNNESKGRNSQHQVAdssssktNKIMQK 876
                  5799*******************875544300044444.33666655554123344578999885.58889************97666.3334444445555555554..4456688555..69*******************5558******************9988522234456777899999888888999***********************998883..33455678********999888887.7889999999999999998888886665544344333444444 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 1.9
    TIGR00955   41 lknvsGvaksGellAvlGsSGaGKtTLlnal 71  
                   l++ s ++  G+   ++G  GaGK+ +  al
  MMETSP1061-20121228|44421_1 1252 LNDLSFKIPAGKSCGIVGRTGAGKSSITVAL 1282
                   7889999999**************9876555 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 2e-06
    TIGR00955  166 glSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqkgktviltiHQPsselfelfdkiillaeGrv 245 
                     S Ger+ l la  ll++P++L++DE T+++D  + a + k+L+      +t ++ti     ++++ +d +++++ Gr 
  MMETSP1061-20121228|44421_1 1395 NFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFP--NTTLVTIAHRLNTIMD-YDCVLVMDAGRA 1471
                   68*******************************9988777777775443..3445566555566665.788888888886 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.0   0.0   7.9e-15   5.3e-13       2     189 ..     591     790 ..     590     814 .. 0.76
   2 ?    6.9   0.0     0.015         1       3      41 ..    1259    1297 ..    1257    1309 .. 0.89
   3 !   19.5   0.1   2.1e-06   0.00014     113     191 ..    1395    1472 ..    1380    1486 .. 0.81

  Alignments for each domain:
  == domain 1    score: 47.0 bits;  conditional E-value: 7.9e-15
    TIGR03771   2 svdkGellgllGpnGaGkttllrailglikvakGsvkvagkssrk........grreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfaavadalerv...klteladrpvGelsGGqrqrvlvaralavkp..slllldepftGldlpsqellvelfeelag...egtailmtthdlae.avatcdrvvl.lngr 189
                  ++ kGe++ + Gp G+Gk+tll  il   ++ + ++ +++ +  k           +i y pq   f     +++++ ++ G      ++r +++ d  a +  +++    +l ++ +r v  lsGGqrqrv +ara   +p  s ++ld+pf+ ld  + +l+ e +++  +   +++a+l++th     +  ++d+v+l +ngr
  MMETSP1061-20121228|44421_1 591 ELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKetvppmveKNGRISYAPQD-PFI--LNLSLRENIVFGS--DFDPVRYNRVLDACALRPDIKQLggsDLVQIGERGV-TLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGPDallKESAVLLVTHASHFiSHRAVDKVLLmVNGR 790
                  7889**********************99998888888887543221111111134578899986.454..5678888888885..68999***********99888862225777788888.5****************99966689*************9999888876443122689999***986541445667776525665 PP

  == domain 2    score: 6.9 bits;  conditional E-value: 0.015
    TIGR03771    3 vdkGellgllGpnGaGkttllrailglikvakGsvkvag 41  
                   + +G+  g++G  GaGk+++  a++ l++ + Gs+ ++ 
  MMETSP1061-20121228|44421_1 1259 IPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDN 1297
                   6689999****************************9876 PP

  == domain 3    score: 19.5 bits;  conditional E-value: 2.1e-06
    TIGR03771  113 elsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeelagegtailmtthdlaeavatcdrvvllngrvv 191 
                   ++s G+rq + +aral  +p++l+lde  + +d  +   + +++++    +t+++  +h l   ++    +v+  gr  
  MMETSP1061-20121228|44421_1 1395 NFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTR-FPNTTLVTIAHRLNTIMDYDCVLVMDAGRAA 1472
                   6899*******************************999999998875.4568899999*99999987555555555555 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   0.0     0.076       5.1      19      44 ..     588     613 ..     579     626 .. 0.64
   2 !   27.4   0.0   3.9e-09   2.6e-07     168     265 ..     707     809 ..     698     830 .. 0.76
   3 !   11.7   0.0   0.00021     0.014      15      49 ..    1251    1286 ..    1235    1311 .. 0.77
   4 !   22.9   0.0   8.8e-08   5.9e-06     422     517 ..    1390    1482 ..    1380    1489 .. 0.84

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.076
    TIGR03269  19 isleleeGevlGilGksGaGksvllh 44 
                   ++el +Ge++ + G  G+Gks ll+
  MMETSP1061-20121228|44421_1 588 FDFELRKGEIMVVCGPVGSGKSTLLN 613
                  45566666666666666666666554 PP

  == domain 2    score: 27.4 bits;  conditional E-value: 3.9e-09
    TIGR03269 168 dlsGGekqrvvlarqlakepl..llladeptGtldpktaklvhealkea..vkeedislvltshwpevie.dlsdkaillekGeiveeGepeevvakflesvs 265
                   lsGG++qrv lar   k+pl  +++ d+p  +ld  t klv e l+++  +  ++ +++l +h ++ i+   +dk +l+ +G     G+ ee+ +   e+ +
  MMETSP1061-20121228|44421_1 707 TLSGGQRQRVSLARAAYKQPLssCIILDDPFSALDSGTGKLVFEQLIAGpdALLKESAVLLVTHASHFIShRAVDKVLLMVNGRNEFLGSWEELTQLNDEEHD 809
                  59******************9778999******************9976222334555555666666665157899999999998888888887766555544 PP

  == domain 3    score: 11.7 bits;  conditional E-value: 0.00021
    TIGR03269   15 vlknisleleeGevlGilGksGaGks.vllhllrGl 49  
                   +l+++s+++  G++ Gi+G++GaGks + + l+r +
  MMETSP1061-20121228|44421_1 1251 ALNDLSFKIPAGKSCGIVGRTGAGKSsITVALFRLV 1286
                   689999******************972445555544 PP

  == domain 4    score: 22.9 bits;  conditional E-value: 8.8e-08
    TIGR03269  422 dklpdelseGerhrvalaqvlikeprivildeptGtmdpitkvkvaesilkareeleetfvivshdmdfvlevcdraalmrdGkivkiGdpeeive 517 
                   +   +++s+Ger  + la+ l+ +p++++lde t ++d  t   +++ +l++r   + t v ++h ++ +++  d + +m  G+  +   p+++++
  MMETSP1061-20121228|44421_1 1390 EEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQK-MLRTRF-PNTTLVTIAHRLNTIMD-YDCVLVMDAGRAAEFDAPAKLLA 1482
                   5556789********************************99987765.667775.4889999****999988.58899999999988888887776 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.0   1.3e-09   8.8e-08      18     224 ..     585     805 ..     580     840 .. 0.72
   2 !   18.0   0.0   4.8e-06   0.00033      16      69 ..    1250    1303 ..    1235    1333 .. 0.82
   3 !   19.1   0.0   2.4e-06   0.00016     133     195 ..    1395    1457 ..    1385    1491 .. 0.82

  Alignments for each domain:
  == domain 1    score: 29.8 bits;  conditional E-value: 1.3e-09
    TIGR03522  18 ldevsfeaekGeivGflGPnGaGkstlmkiltgylkad....sGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaalyklkgrklkkrveelielvGlkaeqhkkiga....lskGyrqrvGlakallhdP..kvlildePttGldPnq.lveirevik...eiakdktvilsthimqeve.alcdrviiinkGkivadkkleelkaaek 224
                  + +  fe +kGei+   GP G+Gkstl+  +    +a     s s     ++ +   +e +  i y P+ +P+ l+l +re + f ++   ++ +++ +  +   +   l   +  +ig+    ls G rqrv la+a   +P  + +ild+P + ld     +   ++i+    + k+ +v+l th    +     d+v+++ +G+     + eel++ ++
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALerklSMSSLPLPKETVPPMVEKNGRISYAPQ-DPFILNLSLRENIVFGSDFDPVRYNRVLDACALRPDIKQLGGSDLVQIGErgvtLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTgKLVFEQLIAgpdALLKESAVLLVTHASHFIShRAVDKVLLMVNGRNEFLGSWEELTQLND 805
                  567789*********************986654444430001444444556666667788889*****6.7******************999866555544433333334444444554333339*****************96668***********8542455677775333689999999999998876424568888888887666555555555554 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 4.8e-06
    TIGR03522   16 kaldevsfeaekGeivGflGPnGaGkstlmkiltgylkadsGsvavagedvlkn 69  
                    al+++sf++  G+  G +G  GaGks++   l   ++ +sGs+ +++ d ++ 
  MMETSP1061-20121228|44421_1 1250 LALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTL 1303
                   589*******************************************99998765 PP

  == domain 3    score: 19.1 bits;  conditional E-value: 2.4e-06
    TIGR03522  133 alskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilsthimqev 195 
                   ++s G rq   la+all +Pkvl+lde t+ +d +    i++++++   + t++  +h ++ +
  MMETSP1061-20121228|44421_1 1395 NFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRLNTI 1457
                   68999****************************999999999988888888887777766555 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0     7e-08   4.7e-06      10     164 ..     587     747 ..     579     774 .. 0.76
   2 !   20.4   0.0   9.3e-07   6.3e-05       6      76 ..    1250    1319 ..    1245    1327 .. 0.85
   3 !   20.6   0.0   8.1e-07   5.4e-05     126     174 ..    1394    1442 ..    1381    1456 .. 0.82

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 7e-08
    TIGR01166  10 glnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysr.kgllelrkkvalvlqdpddqlfaadvdedvafgplnlGlseaever..rvrealaavdisglee..rpthllsgGekkrvaiagavalrp..dvllldePtagldp.aGae 164
                  + ++++++ge +++ G+ G+Gkstll+ +       + k+ +   +l  +    ++e+  ++++  qdp   ++  ++ e++ fg     ++ ++v     +r  +++++ s+l +      +lsgG+++rv++a a   +p    ++ld+P + ld+ +G+ 
  MMETSP1061-20121228|44421_1 587 SFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETvPPMVEKNGRISYAPQDP--FILNLSLRENIVFGSDFDPVRYNRVLDacALRPDIKQLGGSDLVQigERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSgTGKL 747
                  5799*********************87777777777888888888886655145777778888888877..6999**********98877877777551246777888888887662234568**************9999855689**********723443 PP

  == domain 2    score: 20.4 bits;  conditional E-value: 9.3e-07
    TIGR01166    6 evlkglnlavergevlallGanGaGkstlllhlnGllrPksGkvlldGeeldysrkgllelrkk.valvlqd 76  
                    +l++l++++  g++ +++G+ GaGks +   l  l+  +sG +lld   +d    gl ++r + ++++ qd
  MMETSP1061-20121228|44421_1 1250 LALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDN--VDLTTLGLSDVRGRgMSIIPQD 1319
                   689*******************************************95..6667888888886613444465 PP

  == domain 3    score: 20.6 bits;  conditional E-value: 8.1e-07
    TIGR01166  126 hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklr 174 
                   + +s Ge++ + +a a+  +p+vl+lde ta++d++    + ++lr   
  MMETSP1061-20121228|44421_1 1394 SNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRF 1442
                   689*********************************9999999987643 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   2.4e-08   1.6e-06      18     230 ..     585     801 ..     581     809 .. 0.81
   2 !   16.4   0.0   1.7e-05    0.0012      16      80 ..    1250    1314 ..    1234    1333 .. 0.84
   3 !   22.6   0.0   2.2e-07   1.5e-05     132     218 ..    1384    1469 ..    1377    1473 .. 0.90

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 2.4e-08
    TIGR03411  18 lndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarl.G.igRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieevleligLeekadkkaglLshGqkqwLeigmllvqep..kllllDePvaGmtdeetektaell....kelakersvvvvehDmefvrela.ekvtvlheGkvlaeGsldevq 230
                  + ++++++++ge+ v+ Gp G+Gk+tll+ i   +++ e ++ +++  l k +   ++++ G i+   q p ++ +l+ +en+      d   ++ +   +  + +  i+++     L  +  ++  +Ls Gq+q++ ++    ++p  + ++lD+P + + +   + + e l     +l ke +v++v h  +f+ + a +kv  + +G+    Gs +e++
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMVEKnGrISYAPQDPFIL-NLSLRENIVFGSDFDPVRYNRVLDAC--ALRPDIKQL-GGSDLV-QIGERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLiagpDALLKESAVLLVTHASHFISHRAvDKVLLMVNGRNEFLGSWEELT 801
                  56789********************************************9999987775424588888999886.79********9999988777775544..344555554.333443.34456789**************999985579********998877776655442444589****************98775899999999988888877765 PP

  == domain 2    score: 16.4 bits;  conditional E-value: 1.7e-05
    TIGR03411   16 kalndlslsveegelrviiGpnGaGkttllDvitGktrpdeGsvlfkgkdltklkeaeiarlGig 80  
                    alndls+++ +g+   i+G  GaGk+ +  ++   ++ ++Gs+l+++ dlt l  +++   G++
  MMETSP1061-20121228|44421_1 1250 LALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVRGRGMS 1314
                   59*************************************************99887777776665 PP

  == domain 3    score: 22.6 bits;  conditional E-value: 2.2e-07
    TIGR03411  132 gLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvvehDmefvrelaekvtvlheG 218 
                    L++k ++  ++ s G++q L+++  l+ +pk+l+lDe +a +  e  + + ++l++   ++++v + h ++ + ++++ v v+  G
  MMETSP1061-20121228|44421_1 1384 LLSTKLEEGGSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFPNTTLVTIAHRLNTIMDYDC-VLVMDAG 1469
                   57788889999********************************9999999**********************9999876.6677766 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   1.5e-10     1e-08       2     143 ..     601     752 ..     600     808 .. 0.64
   2 !    8.5   0.2     0.003       0.2       1      36 [.    1267    1302 ..    1267    1316 .. 0.92
   3 !   24.4   0.0   4.2e-08   2.8e-06      99     193 ..    1394    1485 ..    1382    1497 .. 0.84

  Alignments for each domain:
  == domain 1    score: 32.5 bits;  conditional E-value: 1.5e-10
    TIGR01187   2 LGpsGsGkttlLrll....aGle.eldsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkmrkvpkaei......kervkeaLelvqleefakrkpsqlsGGqrqrvalaravvkkP..kiLLlDeplsaLDkkLrdqmqlel 143
                   Gp GsGk+tlL  +      le +l++ ++ l +e v  +  ++  +    q+      +++ en+ fg   + v  + +      ++ + + L   +l ++++r    lsGGqrqrv+lara  k+P    ++lD+p+saLD    + + + l
  MMETSP1061-20121228|44421_1 601 CGPVGSGKSTLLNGIldeaEALErKLSMSSLPLPKETVPPMVEKNGRISYAPQDPF-ILNLSLRENIVFGSDFDPVRYNRVldacalRPDI-KQLGGSDLVQIGERG-VTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQL 752
                  59999999999986622221233145666666667777666667777777777644.4479999***998766655443331000003333.345556666777665.56*******************66689**********87666655555 PP

  == domain 2    score: 8.5 bits;  conditional E-value: 0.003
    TIGR01187    1 lLGpsGsGkttlLrllaGleeldsGkilldgedvte 36  
                   ++G +G+Gk+ +   l  l e++sG+illd++d+t+
  MMETSP1061-20121228|44421_1 1267 IVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTT 1302
                   6799*****************************997 PP

  == domain 3    score: 24.4 bits;  conditional E-value: 4.2e-08
    TIGR01187   99 sqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqeealtmsdriavlrkGkiaqigepeeiyeePa 193 
                   s++s G rq + lara+  +Pk+L+lDe+ +++D +    +q+ l++       t+v ++h  +  +   d + v+  G+ a  + p ++ ++ +
  MMETSP1061-20121228|44421_1 1394 SNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRFP--NTTLVTIAHRLNT-IMDYDCVLVMDAGRAAEFDAPAKLLADGN 1485
                   57899*************************************88876444..4677888887665.555799**********9999999877755 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.0   2.4e-12   1.6e-10       4     197 ..     588     795 ..     585     804 .. 0.76
   2 ?    4.7   0.1     0.061       4.1       1      52 [.    1252    1303 ..    1252    1313 .. 0.90
   3 !   18.1   0.0     5e-06   0.00034     113     195 ..    1394    1473 ..    1384    1477 .. 0.83

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 2.4e-12
    TIGR01184   4 vdleikkgefislighsgcgkstllnliaglekptsgavilegkeitepgpdrmvvfq.nys......llpwltvrenialavdavlrdlskserreiveehielvglreaad..krpeqlsggmkqrvaiaralsirp..klllldepfgaldaltreelqekllkivee..arvtvlmvthdvdeall.lsdrvvmltngpaakig 197
                   d+e++kge++ + g  g gkstlln i   ++  +  +++    + +     mv  +   s      ++  l+ reni++  d      ++      ++ +i+ +g ++  +   r   lsgg +qrv++ara   +p    ++ld+pf ald+ t + + e+l+   +   ++ +vl+vth          d+v+++ ng +  +g
  MMETSP1061-20121228|44421_1 588 FDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKETVPPMVEKNgRISyapqdpFILNLSLRENIVFGSDFDPVRYNRVLDACALRPDIKQLGGSDLVQigERGVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSGTGKLVFEQLIAGPDAllKESAVLLVTHASHFISHrAVDKVLLMVNGRNEFLG 795
                  57899*********************9988888888888888777665555555543212220011114556799999999999888888888888888888877765554331257789***************999955689**********************87665336789999**98765444156999999999887777 PP

  == domain 2    score: 4.7 bits;  conditional E-value: 0.061
    TIGR01184    1 lkdvdleikkgefislighsgcgkstllnliaglekptsgavilegkeitep 52  
                   l+d++++i  g+   ++g +g gks++   +  l +  sg++ l+  ++t  
  MMETSP1061-20121228|44421_1 1252 LNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTL 1303
                   6789999********************999999999999***9998887765 PP

  == domain 3    score: 18.1 bits;  conditional E-value: 5e-06
    TIGR01184  113 eqlsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdealllsdrvvmltngpaak 195 
                   +++s g +q + +aral  +pk+l+lde   ++d  t   +q+ l   +   ++t + ++h ++ +++  d v+++ +g aa+
  MMETSP1061-20121228|44421_1 1394 SNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTRF--PNTTLVTIAHRLN-TIMDYDCVLVMDAGRAAE 1473
                   5789999******************************999998776544..5678899999986.567778888888888775 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.7   0.0   4.7e-08   3.2e-06      19     176 ..     587     744 ..     582     800 .. 0.73
   2 !   14.0   0.0   4.2e-05    0.0028      15      87 ..    1250    1320 ..    1234    1328 .. 0.82
   3 !   19.9   0.0   6.6e-07   4.5e-05     141     479 ..    1395    1469 ..    1384    1483 .. 0.56

  Alignments for each domain:
  == domain 1    score: 23.7 bits;  conditional E-value: 4.7e-08
    TIGR02633  19 nidlklraGeivslcGenGaGkstlmkvlsgvy.phGtydGeilfegeelkassird.terkG.iviihqeltlvkelsvleniflGneitlkGglmdydamvlrakellrelklda.snvtrpvsdlGlGqqqlveiakalnkq..vrllildepsaslteke 176
                  + d++lr Gei+ +cG  G+Gkstl+    g+     + + ++ ++  +l  +++    e++G i+   q   ++ +ls+ eni +G +          da  lr    +++l  ++ ++       l +Gq+q v +a+a  kq     +ild+p ++l    
  MMETSP1061-20121228|44421_1 587 SFDFELRKGEIMVVCGPVGSGKSTLLN---GILdEAEALERKLSMSSLPLPKETVPPmVEKNGrISYAPQ-DPFILNLSLRENIVFGSDFDPVRYNRVLDACALRP--DIKQLGGSDlVQIGERGVTLSGGQRQRVSLARAAYKQplSSCIILDDPFSALDSGT 744
                  56899*******************965...55514567999**********9999862677773444555.567889***********986444222223333332..2333332220222223456889**************955579********997654 PP

  == domain 2    score: 14.0 bits;  conditional E-value: 4.2e-05
    TIGR02633   15 kaldnidlklraGeivslcGenGaGkstlmkvlsgvyphGtydGeilfegeelkassirdterkGiviihqel 87  
                    al+++++k+ aG+  ++ G  GaGks++   l  +      +G il ++ +l + +++d   +G++ii q+ 
  MMETSP1061-20121228|44421_1 1250 LALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEI--ESGSILLDNVDLTTLGLSDVRGRGMSIIPQDP 1320
                   589999*********************987777666544..4799***********************99975 PP

  == domain 3    score: 19.9 bits;  conditional E-value: 6.6e-07
    TIGR02633  141 dlGlGqqqlveiakalnkqvrllildepsaslteketeilldiirdlkakgvacvyishkleevkavsdtisvirdGqhvatkdaealseddiitmmvGreltslypkepheigdvilevenltaydvvnrkikrvddvsfslrrGeilGvaGlvGaGrtelvqalfGaypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlavlkkfakksrideaaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqlaqeGvaiivvsselaevlGlsdrvlvigeG 479 
                   ++  G++ql+++a+al  q ++l+lde +as+   et+ +++ +   +  + + v i+h+l+                                                                                                                                                                                                                                                                       ++   d vlv++ G
  MMETSP1061-20121228|44421_1 1395 NFSVGERQLLNLARALLSQPKVLVLDEATASID-GETDAFIQKMLRTRFPNTTLVTIAHRLN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TIMD-YDCVLVMDAG 1469
                   444555555555555555555555555555543.3444444444344445555555555555......................................................................................................................................................................................................................................................................4444.2445555444 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.1   0.0   0.00036     0.024      18     168 ..     587     754 ..     580     806 .. 0.64
   2 !   22.3   0.0   2.9e-07   1.9e-05       1      72 [.    1235    1308 ..    1235    1332 .. 0.88
   3 !   22.4   0.0   2.6e-07   1.7e-05     122     168 ..    1393    1439 ..    1382    1470 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 0.00036
    TIGR03740  18 nvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrk....dlkkiGsliesP..alyenltarenlkvrtlllglpesrieev.........lkivdlentekkkakqfslGmkqrlGiaiallnkP..kllildePtnGldP.lGiqelrelik 168
                  + +++++k ++  + Gp G+Gkstll  +    +  + ++ + + ++ ++    +++k G +  +P  +   nl+ ren+   +    +  +r+ +          l   dl +++ +    +s G +qr+ +a a  ++P    +ild+P   ld   G   + +li 
  MMETSP1061-20121228|44421_1 587 SFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLSMSSLPLPKEtvppMVEKNGRISYAPqdPFILNLSLRENIVFGSDFDPVRYNRVLDAcalrpdikqLGGSDLVQIGER-GVTLSGGQRQRVSLARAAYKQPlsSCIILDDPFSALDSgTGKLVFEQLIA 754
                  5678899*****************998776666666667777776666552222678999988877557899*******999887777766666543111111011222344444443.446899***************965689*********96244444556664 PP

  == domain 2    score: 22.3 bits;  conditional E-value: 2.9e-07
    TIGR03740    1 letknlskkfkkq..avvnnvslkvkknsvygllGpnGaGkstllklltGllrktsGeilldgrewtrkdlkki 72  
                   le +n+s +++ +   ++n++s+k++  +  g++G  GaGks++   l  l++ +sG+illd+ ++t   l+++
  MMETSP1061-20121228|44421_1 1235 LEFRNVSLRYRTElpLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDV 1308
                   567888888888633589***********************************************999888876 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 2.6e-07
    TIGR03740  122 akqfslGmkqrlGiaiallnkPkllildePtnGldPlGiqelrelik 168 
                    ++fs+G +q l +a all +Pk+l+lde t  +d      ++++++
  MMETSP1061-20121228|44421_1 1393 GSNFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLR 1439
                   579*****************************999766555556555 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.8   0.1   5.6e-11   3.8e-09      40     198 ..     585     743 ..     568     790 .. 0.73
   2 !   10.1   0.1   0.00092     0.062      33      86 ..    1245    1298 ..    1238    1307 .. 0.90
   3 !    8.2   0.0    0.0033      0.22     164     262 ..    1395    1490 ..    1385    1510 .. 0.84

  Alignments for each domain:
  == domain 1    score: 33.8 bits;  conditional E-value: 5.6e-11
    TIGR03415  40 vadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrkl..rtkrvsmvfqkfallPWrtveenvafGlelsGvakaerrkrve.....eqlelvglaeWadkkvgelsGGmqqrvGlarafate..adillmdePfsaldPl 198
                  v    +++++Gei+v+ G  GsGks+ll  +   +     k++       +    ++++t+  +  +  r+s   q   +l  ++++en+ fG +++ v  + + +  +     +ql   +l +  ++ v  lsGG +qrv lara   +  +  +++d+Pfsald  
  MMETSP1061-20121228|44421_1 585 VGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEAEALERKLS-------MSSLPLPKETVPPMveKNGRISYAPQDPFIL-NLSLRENIVFGSDFDPVRYNRVLDACAlrpdiKQLGGSDLVQIGERGV-TLSGGQRQRVSLARAAYKQplSSCIILDDPFSALDSG 743
                  555677899******************9887655544444444.......4444455555554411356899998886555.699************999999888776222224555556666666655.5*************9766544678999********75 PP

  == domain 2    score: 10.1 bits;  conditional E-value: 0.00092
    TIGR03415   33 ktGlvlgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkde 86  
                   +t l l+ +d s+++  G  + ++G +G+Gkss+  a+ +l  +  G++l+ + 
  MMETSP1061-20121228|44421_1 1245 RTELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNV 1298
                   66777899***************************************9988765 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0033
    TIGR03415  164 elsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfvshdldealklGnriaimegGrivqlgtpeeivlkPaneyva 262 
                   ++s G +q + lara+  + ++l++de  +++d    a +q  l +  +  + t+v ++h l+  +     + +m+ Gr    ++p +++++ ++    
  MMETSP1061-20121228|44421_1 1395 NFSVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRT--RFPNTTLVTIAHRLNTIMDYD-CVLVMDAGRAAEFDAPAKLLADGNEGIFS 1490
                   6788999***************************999999975432..33478999*******999875.6889**********999998877665555 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.3   0.0   0.00055     0.037      21      49 ..     588     617 ..     576     647 .. 0.86
   2 ?    6.7   0.0     0.015         1     139     215 ..     705     790 ..     688     801 .. 0.72
   3 !    9.0   0.0    0.0029       0.2       3      64 ..    1234    1299 ..    1232    1314 .. 0.77
   4 !   13.1   0.0   0.00016     0.011     140     219 ..    1394    1474 ..    1383    1496 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00055
    TIGR02323  21 vsf.lypGevlgivGesGsGkstllkalaa 49 
                   +f l+ Ge++ + G  GsGkstll+ +  
  MMETSP1061-20121228|44421_1 588 FDFeLRKGEIMVVCGPVGSGKSTLLNGILD 617
                  467899*******************99865 PP

  == domain 2    score: 6.7 bits;  conditional E-value: 0.015
    TIGR02323 139 paafsGGmqqrlqiarnlvtrp...rlvfmeptGGlvsvqarllllrglvr.e..l.glaviivth..lavarllaqrllvmkqGr 215
                    ++sGG +qr+ +ar+   +p    +++ +p   l s   +l++ + +   +  l + av++vth    +     +++l+m +Gr
  MMETSP1061-20121228|44421_1 705 GVTLSGGQRQRVSLARAAYKQPlssCIILDDPFSALDSGTGKLVFEQLIAGpDalLkESAVLLVTHasHFISHRAVDKVLLMVNGR 790
                  5689*****************9442245559***9999999987543332211112145889999943234555566778887776 PP

  == domain 3    score: 9.0 bits;  conditional E-value: 0.0029
    TIGR02323    3 llevselsksygskkgcr...vsf.lypGevlgivGesGsGkstllkalaarlladaGevtyesrs 64  
                   lle +++s  y ++  +    +sf +  G+  givG +G+Gks++  al   +  ++G++  ++ +
  MMETSP1061-20121228|44421_1 1234 LLEFRNVSLRYRTELPLAlndLSFkIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVD 1299
                   67777777777776543322689977789*****************99999888999998777655 PP

  == domain 4    score: 13.1 bits;  conditional E-value: 0.00016
    TIGR02323  140 aafsGGmqqrlqiarnlvtrprlvfm.eptGGl.vsvqarll.llrglvrelglaviivth.lavarllaqrllvmkqGrvves 219 
                   ++fs G +q l++ar+l+++p+++++ e t  +    +a +  +lr+   +   + + ++h l    +  + +lvm  Gr  e 
  MMETSP1061-20121228|44421_1 1394 SNFSVGERQLLNLARALLSQPKVLVLdEATASIdGETDAFIQkMLRTRFPNT--TLVTIAHrLNT-IMDYDCVLVMDAGRAAEF 1474
                   68********************888768898885555555556777666644..45666774554.455678999999998875 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0039      0.26      28     111 ..     532     619 ..     516     633 .. 0.70
   2 !   15.1   0.0   1.1e-05   0.00072     208     337 ..     704     838 ..     690     888 .. 0.72
   3 !    8.5   0.0     0.001     0.069     211     288 ..    1397    1470 ..    1390    1479 .. 0.63

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0039
    TIGR00956  28 lgvaykdlsvegvaadaeyqstlvn.illklleeilr...klkkekeskkfdilkdvdglikpgelvvvLGrPgsGcstlLksiaskt 111
                  +g+  ++ s +g+++d +  +  +n +  + +++ ++   ++++ ++++    + + d  ++ ge++vv G+ gsG+stlL  i  + 
  MMETSP1061-20121228|44421_1 532 VGIDPENDSDSGSHSDRDSTTKASNnVSSESVNKNMQtddNIENGNRENPSFTVGSFDFELRKGEIMVVCGPVGSGKSTLLNGILDEA 619
                  6677777777777777766555444044444444444111344445555555677888999********************9886655 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.1e-05
    TIGR00956 208 RGv..sGGerkRvsiaevlvakakiqc..wDnatrGLDsata.lefvkalktsaeilkatalvaiyqasqda.yelFdkvvvlyeGkqiyfGkadkakeyFekmGfkCpdRqttadFLtsltspkereikkgyekk 337
                  RGv  sGG+r+Rvs+a +   ++   c  +D+    LDs t  l f + +     +lk++a++ +  as+ + +   dkv+++ +G+  + G+ ++  +  ++  ++ + R+++     ++ +  ++  k g  +k
  MMETSP1061-20121228|44421_1 704 RGVtlSGGQRQRVSLARAAYKQPLSSCiiLDDPFSALDSGTGkLVFEQLIAGPDALLKESAVLLVTHASHFIsHRAVDKVLLMVNGRNEFLGSWEELTQL-NDEEHDEQTRRAVDHIQSQIRENTDESNKDGNGDK 838
                  665559*************99976655337**********9637777888888899999999999999998637899***************99987664.55566667776665555555555555555555555 PP

  == domain 3    score: 8.5 bits;  conditional E-value: 0.001
    TIGR00956  211 sGGerkRvsiaevlvakakiqcwDnatrGLDsatalefvkalktsaeilkatalvaiyqasqdayelFdkvvvlyeGk 288 
                   s Ger+ + +a +l++++k++++D+at  +D  t   + k+l+t      +t+lv+i    + + + +d v+v+++G+
  MMETSP1061-20121228|44421_1 1397 SVGERQLLNLARALLSQPKVLVLDEATASIDGETDAFIQKMLRTR---FPNTTLVTIAHRLNTIMD-YDCVLVMDAGR 1470
                   556677777777777777777777777777776666666666654...345556666665555554.56666666665 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.3   0.0    0.0024      0.16     350     385 ..     578     613 ..     534     626 .. 0.74
   2 ?    0.8   0.0      0.44        30     464     533 ..     706     775 ..     689     790 .. 0.72
   3 !   12.7   4.6   0.00011    0.0075      51     414 ..     951    1309 ..     943    1329 .. 0.63
   4 ?    1.7   0.0      0.24        16     469     503 ..    1395    1429 ..    1386    1454 .. 0.84

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0024
    TIGR01194 350 essegfalGpidlriasGelvyivGenGcGkstlik 385
                  +   +f++G  d+ + +Ge++ + G  G Gkstl+ 
  MMETSP1061-20121228|44421_1 578 RENPSFTVGSFDFELRKGEIMVVCGPVGSGKSTLLN 613
                  33457****************************975 PP

  == domain 2    score: 0.8 bits;  conditional E-value: 0.44
    TIGR01194 464 ystttdlstGqrkrlalvnaylee..rpvllldewaadqdpafkrvfyeell..pdlkrrGktilvishddryf 533
                        ls Gqr+r++l  a  ++     ++ld+  +  d    ++ +e+l+  pd   +  ++l+++h  ++ 
  MMETSP1061-20121228|44421_1 706 V----TLSGGQRQRVSLARAAYKQplSSCIILDDPFSALDSGTGKLVFEQLIagPDALLKESAVLLVTHASHFI 775
                  3....49**********9876554233467888877778888888888998777999999999******98875 PP

  == domain 3    score: 12.7 bits;  conditional E-value: 0.00011
    TIGR01194   51 lrqvllsfvGlsllallsrivadlftayvsqriiarlrkelgekvlsapleeverrrahrlltlltsdidtlsdtlli....lttllve..lavtlfglaylaylsvvvflltvvlivlGvaayllarsrGlkftykvrdeedelnky.ttalvsGlkelklnrirrlsfarsaisesavrvadlniieilifilaktvGslllsllvGllltlaayfavidakai.sasvlv.llyikG.....plvqlvsilpilararvaftrlaelserisepepelelseaenvllldhdksvdslelkdvrysykdvessegfalGpidlriasGelvyivGenGcGkstliklllGlyipqeGellldGeavsdesrddyr 414 
                   + + l+ f+   ll++l +   + f    + r    +   +   vl ap+   e     r+l  +t d d ++d++l+    +  + +   +a ++  +a + ++++++f          v++ +l++   ++ t    +  d+l +  ++++vs   e       r ++   +  e  +++ d+n +  l +i  +   s  + +l  ++++l+++  v   + + ++  l+ ll i        l+ lv  +   ++++ a+t +  +    + p   ++ + +      ++    + le+++v + y+      ++al  + ++i  G+   ivG  G Gks++   l  l   ++G +lld   ++     d r
  MMETSP1061-20121228|44421_1  951 QAKYLIVFASTILLSVLCTACRSEFIVTGGVRATKTVFESMLASVLKAPMSYFETVPMGRILNRFTYDTD-VNDVTLTqqisMFMISISwyVAGIVVQIAIIPWMAFTLF---------PVTVMYLIFLHYYRLTGPDLQRIDALSRSpMQSMVSECLEGS--TSIRIFHQDLRFIEKFQQIVDVNSSALLNYISVQRWLSCRMEVLGCVVVMLTSILLVCLHEQLqTSAGLAgLLIIWSanftiTLNFLVITF---SETEAAITAIERVDAMAELPSEAPLETRKG-YQPPSNWPVQGLLEFRNVSLRYRT---ELPLALNDLSFKIPAGKSCGIVGRTGAGKSSITVALFRLVEIESGSILLDNVDLTTLGLSDVR 1309
                   566899999999999999999999999999999999*9****************************9977.455444301002222222002223333333333344444.........444455555555555555555556655431445555444432..2225566667777777777777777777777777777776666544444444444433222221223333033332210001344444444...555555555555555555555555544444.122333344577899999999975...68************************************************9888766655555 PP

  == domain 4    score: 1.7 bits;  conditional E-value: 0.24
    TIGR01194  469 dlstGqrkrlalvnayleerpvllldewaadqdpa 503 
                   ++s+G+r+ l l  a l +  vl+lde +a  d  
  MMETSP1061-20121228|44421_1 1395 NFSVGERQLLNLARALLSQPKVLVLDEATASIDGE 1429
                   689************************99988765 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0   0.00063     0.043     626     663 ..     588     627 ..     560     638 .. 0.82
   2 !   10.6   0.0   0.00036     0.024     817     862 ..     696     740 ..     686     772 .. 0.87
   3 ?   -0.0   0.0      0.59        39     623     650 ..    1252    1279 ..    1245    1290 .. 0.81
   4 ?    2.3   0.0      0.12         8     827     902 ..    1394    1465 ..    1384    1473 .. 0.72

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.00063
    TIGR00630 626 idvsiplglltvitGvsgsGkstLindiLvk..aleerln 663
                   d +++ g+++v+ G+ gsGkstL+n iL +  ale++l+
  MMETSP1061-20121228|44421_1 588 FDFELRKGEIMVVCGPVGSGKSTLLNGILDEaeALERKLS 627
                  567888999*******************965114556555 PP

  == domain 2    score: 10.6 bits;  conditional E-value: 0.00036
    TIGR00630 817 LgYiklGqpattLsGGeaqrvkLakeLskrstgktlyilDePttGL 862
                   + +++G+   tLsGG  qrv La+   k+   +   ilD+P   L
  MMETSP1061-20121228|44421_1 696 SDLVQIGERGVTLSGGQRQRVSLARAAYKQPLSSC-IILDDPFSAL 740
                  56799********************9988876655.5999997766 PP

  == domain 3    score: -0.0 bits;  conditional E-value: 0.59
    TIGR00630  623 lkdidvsiplglltvitGvsgsGkstLi 650 
                   l+d++ +ip g+   i G  g+Gks++ 
  MMETSP1061-20121228|44421_1 1252 LNDLSFKIPAGKSCGIVGRTGAGKSSIT 1279
                   7788899999999999999999999864 PP

  == domain 4    score: 2.3 bits;  conditional E-value: 0.12
    TIGR00630  827 ttLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvdkGntvvviehnldviksaDyiid 902 
                     +s Ge q + La+ L  +     + +lDe t+ +  +    +++ + r      t+v i h l+ i   D+++ 
  MMETSP1061-20121228|44421_1 1394 SNFSVGERQLLNLARALLSQP---KVLVLDEATASIDGE-TDAFIQKMLRTRFPNTTLVTIAHRLNTIMDYDCVLV 1465
                   567888999999998887654...477899998888765.455555555666667888899999999888888764 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.1   0.0   0.00083     0.056      25      47 ..     594     615 ..     584     616 .. 0.85
   2 ?    2.7   0.0     0.074         5      28      61 ..    1263    1292 ..    1228    1302 .. 0.63

  Alignments for each domain:
  == domain 1    score: 9.1 bits;  conditional E-value: 0.00083
    TIGR00618  25 lglklfvicGktGaGKtsLldAI 47 
                  +g ++ v+cG+ G+GK++Ll+ I
  MMETSP1061-20121228|44421_1 594 KG-EIMVVCGPVGSGKSTLLNGI 615
                  45.89***************987 PP

  == domain 2    score: 2.7 bits;  conditional E-value: 0.074
    TIGR00618   28 klfvicGktGaGKtsLldAItyALYgkvpresev 61  
                   k   i G+tGaGK+s    It AL+  v  es +
  MMETSP1061-20121228|44421_1 1263 KSCGIVGRTGAGKSS----ITVALFRLVEIESGS 1292
                   555699********9....566666666555555 PP

>> TIGR03263  guanyl_kin: guanylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   0.00018     0.012       2      35 ..     596     629 ..     595     636 .. 0.89
   2 ?   -0.5   0.1       2.7   1.8e+02       6      23 ..    1267    1284 ..    1263    1293 .. 0.85

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 0.00018
    TIGR03263   2 klivisgpsGvGKstlvkklleekeelklsvSat 35 
                  +++v++gp G GKstl++ +l+e e l+  +S++
  MMETSP1061-20121228|44421_1 596 EIMVVCGPVGSGKSTLLNGILDEAEALERKLSMS 629
                  799*******************999998888875 PP

  == domain 2    score: -0.5 bits;  conditional E-value: 2.7
    TIGR03263    6 isgpsGvGKstlvkklle 23  
                   i+g +G+GKs+++ +l++
  MMETSP1061-20121228|44421_1 1267 IVGRTGAGKSSITVALFR 1284
                   67999*******999986 PP

>> TIGR00231  small_GTP: small GTP-binding protein domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   0.0     0.021       1.4       7      26 ..     599     618 ..     594     625 .. 0.86
   2 ?    5.6   0.1     0.038       2.6       4      23 ..    1263    1282 ..    1261    1291 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.021
    TIGR00231   7 vivGhvdvGKstLlnsllkn 26 
                  v+ G v++GKstLln +l++
  MMETSP1061-20121228|44421_1 599 VVCGPVGSGKSTLLNGILDE 618
                  7889***********99976 PP

  == domain 2    score: 5.6 bits;  conditional E-value: 0.038
    TIGR00231    4 ikivivGhvdvGKstLlnsl 23  
                   + ++ivG+ ++GKs+++  l
  MMETSP1061-20121228|44421_1 1263 KSCGIVGRTGAGKSSITVAL 1282
                   579************99765 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.7   0.0    0.0055      0.37     181     207 ..     598     624 ..     589     632 .. 0.87
   2 ?   -0.4   0.0       1.7   1.1e+02     175     202 ..     969     995 ..     946     999 .. 0.74
   3 ?    1.1   0.0      0.59        40     180     207 ..    1264    1291 ..    1252    1300 .. 0.82

  Alignments for each domain:
  == domain 1    score: 7.7 bits;  conditional E-value: 0.0055
    TIGR03819 181 llvsGgtGsGkttLLsalLalvaedeR 207
                  ++v G  GsGk tLL+ +L +++  eR
  MMETSP1061-20121228|44421_1 598 MVVCGPVGSGKSTLLNGILDEAEALER 624
                  6899****************9999888 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 1.7
    TIGR03819 175 vaarlallvsGgtGsGkttLLsalLalv 202
                   a+r  ++v+Gg  + kt    ++La+v
  MMETSP1061-20121228|44421_1 969 TACRSEFIVTGGVRATKTVFE-SMLASV 995
                  36899************9754.455554 PP

  == domain 3    score: 1.1 bits;  conditional E-value: 0.59
    TIGR03819  180 allvsGgtGsGkttLLsalLalvaedeR 207 
                   ++ ++G tG+Gk ++  al  lv+ +  
  MMETSP1061-20121228|44421_1 1264 SCGIVGRTGAGKSSITVALFRLVEIESG 1291
                   6779***************999987655 PP

>> TIGR02525  plasmid_TraJ: plasmid transfer ATPase TraJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   0.0    0.0054      0.36     146     170 ..     592     616 ..     586     627 .. 0.84
   2 ?    1.7   0.1      0.31        21     154     173 ..    1267    1286 ..    1256    1291 .. 0.87

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.0054
    TIGR02525 146 lpkaGlGlicGetGsGkstllaaiy 170
                  l+k  + ++cG+ GsGkstll  i 
  MMETSP1061-20121228|44421_1 592 LRKGEIMVVCGPVGSGKSTLLNGIL 616
                  67777889************98875 PP

  == domain 2    score: 1.7 bits;  conditional E-value: 0.31
    TIGR02525  154 icGetGsGkstllaaiyryi 173 
                   i G tG+Gks++  a++r +
  MMETSP1061-20121228|44421_1 1267 IVGRTGAGKSSITVALFRLV 1286
                   679**************975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1519 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       310  (0.0755729); expected 82.0 (0.02)
Passed bias filter:                      194  (0.047294); expected 82.0 (0.02)
Passed Vit filter:                        87  (0.0212092); expected 4.1 (0.001)
Passed Fwd filter:                        61  (0.0148708); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              61  [number of targets reported over threshold]
# CPU time: 2.28u 0.17s 00:00:02.44 Elapsed: 00:00:01.35
# Mc/sec: 1485.12
//
Query:       MMETSP1061-20121228|44437_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|44447_1  [L=501]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.5e-42  141.6   0.0    2.7e-41  139.6   0.0    1.8  1  TIGR00511 ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
    5.2e-31  105.7   0.0    7.1e-31  105.3   0.0    1.1  1  TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
    6.1e-21   72.5   0.0    1.6e-20   71.2   0.0    1.6  1  TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase


Domain annotation for each model (and alignments):
>> TIGR00511  ribulose_e2b2: ribose-1,5-bisphosphate isomerase, e2b2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  139.6   0.0     2e-44   2.7e-41      29     298 ..     199     493 ..     187     495 .. 0.82

  Alignments for each domain:
  == domain 1    score: 139.6 bits;  conditional E-value: 2e-44
    TIGR00511  29 keqaakaeaaseeefkkelrea....ak..llietrPtavslpnalryvlkel....sgedveelreevieradefie.klekaleklGeiGakrikdGdvvmthCnseaalsviktafeqGkdievivtetrPrkqGhitakelrelGipvtlivdsaaryflkevdkvvvGadaitanGavinkiGtsqlalaakearvsvlvaaetyklsPktllGelveieerdaeevv..........d....eeelkelgavkvrnPafdvtPaeyidviitekGliPPesavtvikee 298
                  +++++k+++a++e+f++++++     +     ++ rP +vs+ na  + +  +     + ++e++++e++e+ +++++ +le a + + +    +i+dGd+++t  ++ea   +++ta+e+  d  v v ++rP   G+   ++lre+Gip  +i  +a  y++++v kv vGa a+ +nG++   iGt+ +al ak + v+vlv  etyk+s k  l +  + e  ++++++          d    + + ++ ++ k +n  +dvtP +++  iite G+iPP+s+ ++++e 
  MMETSP1061-20121228|44447_1 199 TSKSNKSKNANDEDFRHHFDHQvlkpSFqfWTVKCRPHSVSMGNAFTFLKTAVasldRDVSLEDAKSELEETIERYLQeRLEYADRAIAQHALTKIHDGDILLTFGHTEAIDVLLRTAHEERIDFYVWVVDARPGADGKKLLQSLREVGIPCGYIRLNALTYVMQQVTKVFVGASALLVNGSIYGTIGTACVALLAKSHHVPVLVCCETYKISNKVQLESITQNELGNPNDLLllansnkengDggagASNSSRQPNLKAANLLYDVTPDKFVSGIITELGIIPPTSVAVLLREM 493
                  44566677777777776655431111221135799***********99988875555566789***********99862689999**********************99999999***************************************************************************************************99988888888888887652222211111111112233456899999******************************9985 PP

>> TIGR00524  eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.3   0.0   5.2e-34   7.1e-31      49     303 .]     222     483 ..     189     483 .. 0.83

  Alignments for each domain:
  == domain 1    score: 105.3 bits;  conditional E-value: 5.2e-34
    TIGR00524  49 lekaadv.llssRPtAvnLsnalervlkalks...sedveevkeslleeaeelieedle.tnrkiGengaklikdgdtvlthCnaGslatsdygtAlgv.irsawedgkeirvialEtRPrlqGsrLtayelveegidvtlitDsavaylikkseidavivGADrivrngdvanKiGtlqlaviakefripFfvaApkstfdtktetGediiiEE.RdpeEvavveg.............vriaplevkvynpAFDitPaelidaiitEkGvitp 303
                  l+   ++   + RP  v++ na   +++a+ s     ++e++k++l e +e+  +e le + r+i ++++  i+dgd +lt+  +          A+ v +r+a+e+  +  v+  ++RP   G +L    l+e gi+   i  +a +y+++  ++ +v+vGA +++ ng+++  iGt  +a++ak++++p +v  +++++++k++  e i+ +E  +p+++  + +             +   + + k+ n  +D+tP +++++iitE G+i+p
  MMETSP1061-20121228|44447_1 222 LKPSFQFwTVKCRPHSVSMGNAFTFLKTAVASldrDVSLEDAKSELEETIERYLQERLEyADRAIAQHALTKIHDGDILLTFGHT---------EAIDVlLRTAHEERIDFYVWVVDARPGADGKKL-LQSLREVGIPCGYIRLNALTYVMQ--QVTKVFVGASALLVNGSIYGTIGTACVALLAKSHHVPVLVCCETYKISNKVQL-ESITQNElGNPNDLLLLANsnkengdggagasNSSRQPNLKAANLLYDVTPDKFVSGIITELGIIPP 483
                  333344413579******9999776666554432278999***99999999887777763789*******************998.........667663699*********************888.679*********************..9****************************************************.6666555279999998877899*********9888999**************************986 PP

>> TIGR00512  salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   71.2   0.0   1.1e-23   1.6e-20      83     333 ..     231     481 ..     202     483 .. 0.86

  Alignments for each domain:
  == domain 1    score: 71.2 bits;  conditional E-value: 1.1e-23
    TIGR00512  83 kesRPtAvnlswalerlkealee...aatekelkealleeaeeileedle.anrkigelgaellkkkaakkekltvLthCNtGslAtagyGtAlgv.irsakekgllehvyadEtRPlnqGarLtawElvkegipatliaDsmaaallkegevdavivGaDRiaanGDtaNKiGtyqlavlakahgvpflvaaplstiDlelksGeeiviEeRdeeEvtkvsg.............vriaakgievynpaFDvtPaelitaiitekGvv 333
                  ++ RP  v + +a + lk+a+++   + + +++k++l e++e+ l+e le a r+i++++++ ++++        +Lt          g+  A+ v +r+a+e+ +   v++ + RP   G +L    l + gip  +i  ++ + +++  +v+ v vGa  +  nG +   iGt  +a+lak h vp+lv   +  i  +++  +  + E  ++++++ + +              +  +++ ++ n  +DvtP + +++iite G++
  MMETSP1061-20121228|44447_1 231 VKCRPHSVSMGNAFTFLKTAVASldrDVSLEDAKSELEETIERYLQERLEyADRAIAQHALTKIHDGD------ILLTF---------GHTEAIDVlLRTAHEERIDFYVWVVDARPGADGKKLLQ-SLREVGIPCGYIRLNALTYVMQ--QVTKVFVGASALLVNGSIYGTIGTACVALLAKSHHVPVLVCCETYKISNKVQLESITQNELGNPNDLLLLANsnkengdggagasNSSRQPNLKAANLLYDVTPDKFVSGIITELGII 481
                  589*************9999888777888999999999999999999988345889999999999999......56665.........5555665527999**********************975.8********************9..8****************************************9999888887776666677777777777666899********987778899************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (501 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       202  (0.0492443); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 2280.23
//
Query:       MMETSP1061-20121228|44485_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       224  (0.0546075); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 459.09
//
Query:       MMETSP1061-20121228|44520_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-79  264.3   0.0    5.6e-79  264.0   0.0    1.0  1  TIGR01219 Pmev_kin_ERG8: phosphomevalonate kinase
    1.1e-11   42.2   0.0     0.0001   19.3   0.0    3.0  3  TIGR01220 Pmev_kin_Gr_pos: phosphomevalonate kinase
      1e-05   23.0   0.0    1.8e-05   22.2   0.0    1.3  1  TIGR00549 mevalon_kin: mevalonate kinase


Domain annotation for each model (and alignments):
>> TIGR01219  Pmev_kin_ERG8: phosphomevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  264.0   0.0   4.1e-82   5.6e-79      84     453 ..      17     416 ..       5     419 .. 0.82

  Alignments for each domain:
  == domain 1    score: 264.0 bits;  conditional E-value: 4.1e-82
    TIGR01219  84 leksknpfiqkaiaavisyfk..kesrdklllqdlditilsdnayysq.....pesltelasfakl.sfnaae......leevaktGLGssaalvtalvaaLlsylvsvdeddvdkelkiddsdkevihnlaqvahClaqGkvGsGfDvaaavyGsirYrrfsPelisqlq...........vdiks.....ltlseklakivke.kwsn.kvkefsLPalltLllGdvkgGsstpklvkkvkkWqksd.peeskei..ydeLsdanleledklsdldklakdhddvylrvikvLesekcvlsaeeellevreallsirrllrkitkeasvdiePekqtslLDdiesleGvllvgvPGaGGfDaifvitlqdvdlrekv...ikawksdkvlaldvseaddGvalekd 453
                   ++s+npf++k++   + y    ++ +       ldi i +dn++ys       +s+ + a  + l +f+ +       +  v+ktGLGssaal+t+lv+aL++y+ + + +              +ihnlaq++hC+aqGkvGsGfDv+aa +G   Yrrf+  l+  l+            di+s     ++l+e l+  v+   w++  v+  +LP  l Lll dv gGs+ p++ + v kW+  +  ++s ei  +  Ls+ n ++ d l++l k  +++ d+    +  L   ++  +a + l  +r+ + +ir+ lr ++++a+v+ieP+ q +l D + +l+Gv++++vPGaGG+Da++++ ++ +++ + +     +w s  v +l v+  ddG++le +
  MMETSP1061-20121228|44520_1  17 SNESVNPFVEKTLRVCLIYLLlsSKLTTLAAPPSLDILIRADNDFYSVlphlpTDSKKTPAEVSALpKFLPCPvdeetgKAVVHKTGLGSSAALTTSLVGALVHYFMRNLPERKEE------NLSAIIHNLAQICHCHAQGKVGSGFDVSAACHGTHVYRRFPKCLLPDLLqlldhfekksgGDIESdkdyhVKLGETLKASVELvPWKEdMVTALNLPNDLQLLLADVRGGSESPSMARTVLKWKAAEkRQDSDEIphWSALSKLNPKIVDSLQQLAKDGNHKIDYDS--LSKLPASEWPSDADSSLIFLRDTFSQIRKELRLMGEAAGVPIEPPPQQELCDATSKLPGVITALVPGAGGYDAVACLYINRTEVVKSIgdlWSSWTSPVVCPLAVRAGDDGLRLETE 416
                  5789999999999887776541044444455679*************99888866666666665554677777677778888*************************998876555......5678************************************976666655566699999995665421112555666655554324666478999*****************************97651566776555******************998887777753..67899****************************************************************************99877661115667778899*************975 PP

>> TIGR01220  Pmev_kin_Gr_pos: phosphomevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.3   0.0   7.6e-08    0.0001     100     175 ..      85     168 ..      48     182 .. 0.74
   2 !    2.6   0.0    0.0091        12     199     236 ..     215     252 ..     195     266 .. 0.68
   3 !   16.7   0.0   4.8e-07   0.00065     274     353 ..     320     405 ..     307     410 .. 0.82

  Alignments for each domain:
  == domain 1    score: 19.3 bits;  conditional E-value: 7.6e-08
    TIGR01220 100 alhlevsseldeadGrkyGlGssgavtvatvkalnafydlelsnee.......ifklavlatlelqsk.gscGdiaasvygGWi 175
                  +l   v+ e  +a  +k GlGss+a+t + v al  ++  +l + +       i+ la +++ + q+k gs+ d++a+++g  +
  MMETSP1061-20121228|44520_1  85 FLPCPVDEETGKAVVHKTGLGSSAALTTSLVGALVHYFMRNLPERKeenlsaiIHNLAQICHCHAQGKvGSGFDVSAACHGTHV 168
                  4456677777888889******************99988777432212333447899999***9999857888******98765 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.0091
    TIGR01220 199 kkdWPglsieplkaPknlelliGWtGsPastadlvsev 236
                    +W + +++ l+ P++l+ll+      + ++++   v
  MMETSP1061-20121228|44520_1 215 LVPWKEDMVTALNLPNDLQLLLADVRGGSESPSMARTV 252
                  369*****************987655555555554444 PP

  == domain 3    score: 16.7 bits;  conditional E-value: 4.8e-07
    TIGR01220 274 qkeirknrqllarlddevgvdieteklkalcdlaeaygg..aakssGaGGGdcGiaildaka....ditrvrqeWekdGikPlplk 353
                  + +  + r++l  + + +gv ie +  + lcd++ ++ g  +a   GaGG d    +  +++     i  + + W +  + Pl ++
  MMETSP1061-20121228|44520_1 320 RDTFSQIRKELRLMGEAAGVPIEPPPQQELCDATSKLPGviTALVPGAGGYDAVACLYINRTevvkSIGDLWSSWTSPVVCPLAVR 405
                  4567899*****************************9983347789******9988888887445566778899999999999875 PP

>> TIGR00549  mevalon_kin: mevalonate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   1.3e-08   1.8e-05      89     151 ..      98     168 ..      84     174 .. 0.84

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 1.3e-08
    TIGR00549  89 ipigaGLGSSAavavaliaalaalfg.......selskeelaklaneaEkivhGk.pSgiDtavvtyggvl 151
                  + ++ GLGSSAa++++l+ al ++f        +e+  + + +la+     ++Gk  Sg D+  +  g  +
  MMETSP1061-20121228|44520_1  98 VVHKTGLGSSAALTTSLVGALVHYFMrnlperkEENLSAIIHNLAQICHCHAQGKvGSGFDVSAACHGTHV 168
                  56789*********************889888777777788888888888899986799999887777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.21
# Mc/sec: 2708.92
//
Query:       MMETSP1061-20121228|44555_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 546.81
//
Query:       MMETSP1061-20121228|44548_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.011   12.8   0.0      0.018   12.1   0.0    1.2  1  TIGR01231 lacC: tagatose-6-phosphate kinase


Domain annotation for each model (and alignments):
>> TIGR01231  lacC: tagatose-6-phosphate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   4.4e-06     0.018     142     209 ..     117     181 ..     108     204 .. 0.85

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 4.4e-06
    TIGR01231 142 pqdyyeklielakdkgvavvldcsgaaletvlesaakptvikpnteelsqllekevtedveelkdalk 209
                  p+ yy+ l e ++  gvav+   +g + +tvl++++k    k      + +l++ v+ed ++l ++++
  MMETSP1061-20121228|44548_1 117 PVAYYTMLKEACETAGVAVIAVETGLTSDTVLKESMKARFDKVSP---QFILQRAVSEDTKQLIEMVR 181
                  789*********************************987766544...45777888888877777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.30
# Mc/sec: 1698.26
//
Query:       MMETSP1061-20121228|44556_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 358.26
//
Query:       MMETSP1061-20121228|44575_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|44582_1  [L=241]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-24   84.3   0.0    2.9e-24   84.0   0.0    1.0  1  TIGR02307 RNA_lig_RNL2: RNA ligase, Rnl2 family
  ------ inclusion threshold ------
      0.037   10.7   0.0      0.051   10.2   0.0    1.3  1  TIGR00457 asnS: asparagine--tRNA ligase


Domain annotation for each model (and alignments):
>> TIGR02307  RNA_lig_RNL2: RNA ligase, Rnl2 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   84.0   0.0   1.4e-27   2.9e-24       1     179 [.       3     220 ..       3     226 .. 0.82

  Alignments for each domain:
  == domain 1    score: 84.0 bits;  conditional E-value: 1.4e-27
    TIGR02307   1 FkkYtelenserrifvekltglglq.....EWvAlEkvHGanFsliviedekkvrlAkRsgiidpned.FfGyeilieeytakvkaisellkeka........kkklesvlvfGElaGkkvqkevv..............Ys.dkdfyafDiklket.........edvvllvfDevlEvfeqvkklkyake...lvRGtldellkldvenfvvdlpalv 179
                  FkkYt++ens+r++fv  + +  +      ++v  Ek HGanF+++      ++++A Rsg ++ n + F+  + l   y++ ++ +  ll  +              ++ v GEl+G+ +++  v              Y+    fyafD+ +  +         +  ++lv+   ++ +    +++ya++   l RGtl e+l + + +++ ++p+ +
  MMETSP1061-20121228|44582_1   3 FKKYTSIENSHRKKFVADCVSAIELgyckdDFVVEEKAHGANFAFYYDGT--ELKTASRSGFLEKNGEgFYKSHHLKRRYEKAIEELYYLLLGSRsnertkqvNXTAMTIRVVGELIGGSYRHSDVerdplvprvqggvdYCpGHVFYAFDLHVLSEregangevhSVCTTLVDKLEMNRLFGLAGFLYARPlnsLFRGTLTECLVFGNTFRTSHIPGWL 220
                  9***************99976433223344****************9985..999********999666*******************99964433333111223345789************9888***************8899******9877767886655444567777777888888889****9722258*******************9866 PP

>> TIGR00457  asnS: asparagine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   2.5e-05     0.051     346     390 ..      78     127 ..      10     137 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 2.5e-05
    TIGR00457 346 tdyPkeikaFYm.....kqnddektvaavDllvPkiGEiiGGseReddld 390
                   +y k i   Y      + n++ k v+   + +  +GE+iGGs R +d++
  MMETSP1061-20121228|44582_1  78 RRYEKAIEELYYlllgsRSNERTKQVNXTAMTIRVVGELIGGSYRHSDVE 127
                  5666666665532344478999999*99999****************987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (241 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1325.39
//
Query:       MMETSP1061-20121228|44593_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.013   12.4   0.1      0.014   12.3   0.1    1.0  1  TIGR03674 fen_arch: flap structure-specific endonuclease


Domain annotation for each model (and alignments):
>> TIGR03674  fen_arch: flap structure-specific endonuclease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.1   3.5e-06     0.014      76     123 ..       6      53 ..       2      55 .] 0.90

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 3.5e-06
    TIGR03674  76 vyvFDGkppelKkeeleeRrevreeaeekleealekgdleeaakyakr 123
                  v  +DG + + K+++ +eR+ +r+++e+ le   ++g + +a+k+++r
  MMETSP1061-20121228|44593_1   6 VVFWDGPARRGKARTDRERKMQRDQQESYLELFCNHGTMISASKKKRR 53 
                  5568**********************************9999998877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 362.97
//
Query:       MMETSP1061-20121228|44602_1  [L=460]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-14   51.7   2.2    4.3e-14   50.7   1.5    1.4  1  TIGR02192 HtrL_YibB: conserved hypothetical protein HtrL


Domain annotation for each model (and alignments):
>> TIGR02192  HtrL_YibB: conserved hypothetical protein HtrL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.7   1.5   1.1e-17   4.3e-14       2     233 ..     190     410 ..     189     430 .. 0.77

  Alignments for each domain:
  == domain 1    score: 50.7 bits;  conditional E-value: 1.1e-17
    TIGR02192   2 esevtivtaflDiGRgDwkaleRdvdkYlsyfetLaalenemiiftdedlkekvvktRkkknledktivikkkldeldersakkiidkeenydqslerkqkknpesispeYvlvvnlkayfvndaiqeglvdeelvvWlDfGyghkenvfrdkk..kwdfaldeskisLfkikkyldevskqdlad..lyiknevlliGGiivgkkkkwkelkklvlkkikillsqn.ivDDDqivl 233
                  +s  tivt+++ +        + d   Y  ++   ++l++ miift++d  +++   Rk     d+t++i  ++d+l+      ++  e+ ++++l+r+ +k     s +   +  +k++fv +ai++++ d++l++W D+G   +   +++k   ++  +++     ++++ +   +  k  l +     + + + +G  +vg k  w  ++++ l+ i  +l+++ i+ +Dq vl
  MMETSP1061-20121228|44602_1 190 KSPNTIVTGYFRLKS------KYDSSEYDGWMKNSLSLQDAMIIFTEPDFVDQIKSFRKH--AVDRTVIIPMTVDDLPIG----KLFSEQFWQDQLDRDPEKR-RHRSYQLFWIWLSKSWFVSQAIRMNIYDSDLFLWSDIGCFRN-TKYNGKTviQHREMVPAHE--ILQMAHHTPNPPKEVLYNdkYKQGAHFYHSGSQLVGFKDTWVTFHNYFLEIIDRFLEKDmIIVEDQAVL 410
                  566788999987643......34677899****************************975..689*************88....77788899999*9987665.566888888999**************************5544.3334444004444444443..44444444455555554311456789999***********************99998763678899666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (460 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 2248.70
//
Query:       MMETSP1061-20121228|44612_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|44617_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 447.06
//
Query:       MMETSP1061-20121228|44625_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        10  (0.00243784); expected 82.0 (0.02)
Passed bias filter:                       10  (0.00243784); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.11s 00:00:00.18 Elapsed: 00:00:00.20
# Mc/sec: 270.58
//
Query:       MMETSP1061-20121228|44637_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.37
# Mc/sec: 203.33
//
Query:       MMETSP1061-20121228|44639_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.6e-06   26.1   0.0    1.9e-06   25.9   0.0    1.1  1  TIGR03499 FlhF: flagellar biosynthesis protein FlhF
    0.00018   18.5   0.0    0.00018   18.5   0.0    1.0  1  TIGR02788 VirB11: P-type DNA transfer ATPase VirB11
    0.00051   17.2   0.0    0.00063   16.9   0.0    1.1  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    0.00063   15.9   0.0    0.00072   15.7   0.0    1.1  1  TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family
     0.0016   15.8   0.0     0.0019   15.6   0.0    1.1  1  TIGR02640 gas_vesic_GvpN: gas vesicle protein GvpN
     0.0017   15.2   0.0     0.0018   15.1   0.0    1.0  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
     0.0017   15.6   0.0     0.0023   15.2   0.0    1.2  1  TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase
     0.0017   15.7   0.0     0.0023   15.3   0.0    1.2  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
     0.0027   14.0   0.0     0.0028   14.0   0.0    1.0  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
      0.003   15.0   0.0      0.004   14.6   0.0    1.2  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
     0.0032   14.2   0.0     0.0041   13.9   0.0    1.1  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0037   15.3   0.0      0.007   14.5   0.0    1.4  1  TIGR02528 EutP: ethanolamine utilization protein, EutP
     0.0043   14.1   0.0      0.005   13.9   0.0    1.1  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
     0.0045   13.4   0.0     0.0046   13.4   0.0    1.0  1  TIGR00955 3a01204: pigment precursor permease
     0.0049   14.0   0.0     0.0055   13.8   0.0    1.1  1  TIGR00064 ftsY: signal recognition particle-docking protein FtsY
     0.0051   14.0   0.0     0.0064   13.7   0.0    1.2  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
      0.008   11.6   0.0     0.0089   11.4   0.0    1.0  1  TIGR01967 DEAH_box_HrpA: ATP-dependent helicase HrpA
     0.0083   12.8   0.0     0.0097   12.6   0.0    1.1  1  TIGR00959 ffh: signal recognition particle protein
  ------ inclusion threshold ------
      0.011   13.0   0.0      0.016   12.5   0.0    1.2  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
      0.012   11.9   0.0      0.015   11.7   0.0    1.1  1  TIGR00602 rad24: checkpoint protein rad24
      0.013   12.8   0.0      0.013   12.8   0.0    1.1  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
      0.014   12.0   0.0      0.014   12.0   0.0    1.1  1  TIGR01817 nifA: Nif-specific regulatory protein
      0.014   12.4   0.0      0.046   10.8   0.0    1.7  2  TIGR02974 phageshock_pspF: psp operon transcriptional activator
      0.015   11.6   0.0      0.016   11.6   0.0    1.0  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
      0.015   11.4   0.0      0.017   11.2   0.0    1.1  1  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
      0.015   12.1   0.1      0.057   10.2   0.0    1.6  2  TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
      0.016   11.3   0.0      0.019   11.1   0.0    1.0  1  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
      0.018   12.3   0.0      0.024   12.0   0.0    1.1  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
      0.019   12.4   0.0      0.026   12.0   0.0    1.2  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
      0.022   12.0   0.0      0.028   11.7   0.0    1.1  1  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
      0.022   11.2   0.0      0.031   10.7   0.0    1.3  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
      0.023   10.7   0.0      0.024   10.6   0.0    1.2  1  TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
       0.03   11.4   0.0      0.031   11.3   0.0    1.1  1  TIGR01420 pilT_fam: twitching motility protein
      0.031   11.4   0.0      0.038   11.1   0.0    1.1  1  TIGR02782 TrbB_P: P-type conjugative transfer ATPase TrbB
      0.032   11.5   0.0      0.049   10.9   0.0    1.3  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
      0.032   10.6   0.0      0.035   10.5   0.0    1.1  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      0.036   11.1   0.0      0.037   11.0   0.0    1.2  1  TIGR01650 PD_CobS: cobaltochelatase, CobS subunit


Domain annotation for each model (and alignments):
>> TIGR03499  FlhF: flagellar biosynthesis protein FlhF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.9   0.0   1.7e-08   1.9e-06     196     222 ..      74     100 ..      42     104 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.9 bits;  conditional E-value: 1.7e-08
    TIGR03499 196 ekggviaLvGptGvGKTTTlAKLAarf 222
                  ++   i+LvG tG GKTT++  LAar+
  MMETSP1061-20121228|44639_1  74 RENEPILLVGETGCGKTTNIQQLAARC 100
                  444569********************8 PP

>> TIGR02788  VirB11: P-type DNA transfer ATPase VirB11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.6e-06   0.00018     116     164 ..      48      96 ..      12     107 .. 0.80

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.6e-06
    TIGR02788 116 elsdadeellellkagdikeFlklaiaakkniiisGgtgsgKTTflkal 164
                    ++ ++   e+ +a ++ e +  ++++++ i+++G tg gKTT ++ l
  MMETSP1061-20121228|44639_1  48 FSQQSSTTFAETNHALRLMESIAVCVRENEPILLVGETGCGKTTNIQQL 96 
                  345566778899999999999***********************98876 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.9   0.0   5.7e-06   0.00063      15      51 ..      61      97 ..      49     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 16.9 bits;  conditional E-value: 5.7e-06
    TIGR03265 15 eaftalkdislsvkkgelvclLGPsGCGkttLLriia 51
                 +a + +++i + v+++e + l+G  GCGktt ++ +a
  MMETSP1061-20121228|44639_1 61 HALRLMESIAVCVRENEPILLVGETGCGKTTNIQQLA 97
                 46678999***********************887776 PP

>> TIGR03345  VI_ClpV1: type VI secretion ATPase, ClpV1 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.7   0.0   6.5e-06   0.00072     193     233 ..      60     101 ..      50     108 .. 0.87

  Alignments for each domain:
  == domain 1    score: 15.7 bits;  conditional E-value: 6.5e-06
    TIGR03345 193 deeirqliDiLlRRrqnnPi.ltGeaGvGktAvveglAlria 233
                  ++ +r +  i +  r+n Pi l+Ge+G Gkt  +  lA r  
  MMETSP1061-20121228|44639_1  60 NHALRLMESIAVCVRENEPIlLVGETGCGKTTNIQQLAARCE 101
                  67899999999999*****8459***************9865 PP

>> TIGR02640  gas_vesic_GvpN: gas vesicle protein GvpN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   1.7e-05    0.0019       1      51 [.      56     106 ..      56     109 .] 0.85

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 1.7e-05
    TIGR02640   1 fieteevkrvtsralrylksgypvhlrGPaGtGktslalhvakkrdrPvvl 51 
                  f et++  r+++     ++ + p+ l+G +G+Gkt+   ++a++ +r +v+
  MMETSP1061-20121228|44639_1  56 FAETNHALRLMESIAVCVRENEPILLVGETGCGKTTNIQQLAARCERTLVV 106
                  5677777777778888888999**********************9998875 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   1.6e-05    0.0018     327     370 ..      54      98 ..      23     106 .. 0.74

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 1.6e-05
    TIGR02857 327 vsvayegrk.palkevsltvepgelvalvGaSGaGKstllklllg 370
                   ++a  ++    ++++ + v+  e + lvG+ G+GK+t ++ l+ 
  MMETSP1061-20121228|44639_1  54 TTFAETNHAlRLMESIAVCVRENEPILLVGETGCGKTTNIQQLAA 98 
                  23444455556788999**********************998875 PP

>> TIGR03167  tRNA_sel_U_synt: tRNA 2-selenouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   2.1e-05    0.0023     118     152 ..      67     101 ..      60     107 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 2.1e-05
    TIGR03167 118 deleelaqelklvvlgGnTGsgKtelLeklaeaga 152
                  +++   ++e + ++l G+TG+gKt+ +++la++ +
  MMETSP1061-20121228|44639_1  67 ESIAVCVRENEPILLVGETGCGKTTNIQQLAARCE 101
                  555666677899******************99855 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   2.1e-05    0.0023       9      53 ..      54      98 ..      48     104 .. 0.90

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.1e-05
    TIGR02211  9 ksykegkleievlkgvsleiekgelvaivGssGsGkstllhllgg 53
                  ++ e ++++++++ + + +++ e + +vG++G Gk+t +  l++
  MMETSP1061-20121228|44639_1 54 TTFAETNHALRLMESIAVCVRENEPILLVGETGCGKTTNIQQLAA 98
                 6899999*******************************9988875 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   2.5e-05    0.0028     437     496 ..      34      93 ..       3      98 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 2.5e-05
    TIGR03797 437 EvdeekvdpgkLsGaievdrvtFrYekdgplvLddvslkiepGefvaivGaSGsGKStll 496
                  E+ ++k++  k  G  + ++ tF+ ++ + + ++++++ +++ e + +vG+ G+GK t +
  MMETSP1061-20121228|44639_1  34 EIGRAKFNTTKSIGFSQQSSTTFAETNHALRLMESIAVCVRENEPILLVGETGCGKTTNI 93 
                  788888899999999999999***********************************9966 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   3.6e-05     0.004      10      51 ..      55      96 ..      49     104 .. 0.85

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 3.6e-05
    TIGR02982 10 yygkgelrkqvlfdinleiepgeiviltGpsGsGkttlltli 51
                  + + +   +++ +i + ++++e ++l G++G+Gktt +  +
  MMETSP1061-20121228|44639_1 55 TFAETNHALRLMESIAVCVRENEPILLVGETGCGKTTNIQQL 96
                 6778888889999************************77655 PP

>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   3.7e-05    0.0041      29      66 ..      67     102 ..      58     107 .. 0.78

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 3.7e-05
    TIGR02928  29 kalkpilrgsrpsnvliyGktGtGKtavtkkvlkelee 66 
                  + +   +r+++p  +l++G+tG+GKt+ ++++  + e+
  MMETSP1061-20121228|44639_1  67 ESIAVCVRENEP--ILLVGETGCGKTTNIQQLAARCER 102
                  555555666555..9**************999887765 PP

>> TIGR02528  EutP: ethanolamine utilization protein, EutP
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   6.3e-05     0.007       3      22 ..      79      98 ..      77     105 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.3e-05
    TIGR02528  3 imliGsvgcGkttLtqaLkg 22
                 i+l+G++gcGktt +q+L  
  MMETSP1061-20121228|44639_1 79 ILLVGETGCGKTTNIQQLAA 98
                 799*************9975 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.0   4.5e-05     0.005     167     203 ..      65     101 ..      40     108 .. 0.76

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 4.5e-05
    TIGR03819 167 vaelleaivaarlallvsGgtGsGkttLLsalLalva 203
                  + e ++  v++   +l++G tG Gktt +  l a+ +
  MMETSP1061-20121228|44639_1  65 LMESIAVCVRENEPILLVGETGCGKTTNIQQLAARCE 101
                  3445566799999**************9999887765 PP

>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   4.1e-05    0.0046      25      81 ..      50     106 ..      28     109 .] 0.78

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 4.1e-05
    TIGR00955  25 krleealarkkpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkv 81 
                  ++ ++++a+++   +l+++++  +++ e + ++G  G GKtT ++ la r e+ l v
  MMETSP1061-20121228|44639_1  50 QQSSTTFAETNHALRLMESIAVCVRENEPILLVGETGCGKTTNIQQLAARCERTLVV 106
                  33445566666899************************************9887766 PP

>> TIGR00064  ftsY: signal recognition particle-docking protein FtsY
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.8   0.0     5e-05    0.0055      71     103 ..      70     100 ..      33     105 .. 0.66

  Alignments for each domain:
  == domain 1    score: 13.8 bits;  conditional E-value: 5e-05
    TIGR00064  71 kelkeekkpnvillvGvNGvGKTttiaKlakll 103
                      +e++p  illvG  G GKTt i  la+ +
  MMETSP1061-20121228|44639_1  70 AVCVRENEP--ILLVGETGCGKTTNIQQLAARC 100
                  344455555..89****************9876 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.7   0.0   5.8e-05    0.0064      16      48 ..      65      97 ..      47     106 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.7 bits;  conditional E-value: 5.8e-05
    TIGR00972 16 alkdvnleikknkvtaliGpsGcGkstllrsln 48
                  ++ + + +++n+ + l+G +GcGk+t ++ l 
  MMETSP1061-20121228|44639_1 65 LMESIAVCVRENEPILLVGETGCGKTTNIQQLA 97
                 35689999*******************999875 PP

>> TIGR01967  DEAH_box_HrpA: ATP-dependent helicase HrpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.4   0.0   8.1e-05    0.0089      73     101 ..      67      95 ..      50     103 .. 0.89

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 8.1e-05
    TIGR01967  73 ediakaiaenqvviiaGetGsGkttqlPk 101
                  e ia  ++en  +++ GetG Gktt + +
  MMETSP1061-20121228|44639_1  67 ESIAVCVRENEPILLVGETGCGKTTNIQQ 95 
                  789999*******************9876 PP

>> TIGR00959  ffh: signal recognition particle protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   8.8e-05    0.0097      96     123 ..      73     100 ..      53     107 .. 0.82

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 8.8e-05
    TIGR00959  96 ekkpavillvGLqGsGKtttaaKlakkl 123
                   +++  illvG  G GKtt + +la++ 
  MMETSP1061-20121228|44639_1  73 VRENEPILLVGETGCGKTTNIQQLAARC 100
                  456678*******************984 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.5   0.0   0.00014     0.016       7      39 ..      65      97 ..      58     103 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.5 bits;  conditional E-value: 0.00014
    TIGR01166  7 vlkglnlavergevlallGanGaGkstlllhln 39
                  ++++ + v++ e + l+G+ G+Gk+t +++l+
  MMETSP1061-20121228|44639_1 65 LMESIAVCVRENEPILLVGETGCGKTTNIQQLA 97
                 5778899999*****************999997 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00013     0.015     113     131 ..      79      97 ..      64     107 .. 0.82

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00013
    TIGR00602 113 LLitGPsGCgKsTvikiLs 131
                  +L+ G  GCgK+T i+ L+
  MMETSP1061-20121228|44639_1  79 ILLVGETGCGKTTNIQQLA 97 
                  5778*************98 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   0.0   0.00011     0.013      38      72 ..      72     105 ..      32     109 .] 0.76

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 0.00011
    TIGR03015  38 GlsereGfilitGevGaGkttlvrnllkkleaekv 72 
                   ++e+e  il+ Ge G+Gktt +++l  + e+  v
  MMETSP1061-20121228|44639_1  72 CVRENE-PILLVGETGCGKTTNIQQLAARCERTLV 105
                  555555.48889**************999985444 PP

>> TIGR01817  nifA: Nif-specific regulatory protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00012     0.014     199     251 ..      56     105 ..      34     109 .] 0.78

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00012
    TIGR01817 199 vGespalkqvvdkikvvarsnstvLlrGesGtGkeliakaihekspRkkkpFv 251
                    e++   +++++i v  r n  +Ll Ge+G Gk      i ++++R +++ v
  MMETSP1061-20121228|44639_1  56 FAETNHALRLMESIAVCVRENEPILLVGETGCGKT---TNIQQLAARCERTLV 105
                  4566667789************************6...466677777666665 PP

>> TIGR02974  phageshock_pspF: psp operon transcriptional activator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.63        70     168     211 ..      15      57 ..      12      62 .. 0.78
   2 ?   10.8   0.0   0.00041     0.046       4      53 ..      58     104 ..      55     109 .] 0.77

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.63
    TIGR02974 168 tlPpLrerkedilllaehfaikmarelelelfsgftekakeall 211
                   l  +r+r+  il+  e+f i  a+ +++++  gf++++ +++ 
  MMETSP1061-20121228|44639_1  15 ALNYIRAREPSILVAVEFFEIGRAK-FNTTKSIGFSQQSSTTFA 57 
                  5777899999999999999998876.556666899999887765 PP

  == domain 2    score: 10.8 bits;  conditional E-value: 0.00041
    TIGR02974   4 eseaflevleqvsrlakldrpvlviGerGtGkeLiaerlhyLskrWeqpl 53 
                  e++  l+++e ++   + + p+l++Ge G Gk      ++ L+ r e+ l
  MMETSP1061-20121228|44639_1  58 ETNHALRLMESIAVCVRENEPILLVGETGCGKTT---NIQQLAARCERTL 104
                  567778999999999999**************64...4555555655555 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   0.00014     0.016     477     519 ..      52      95 ..      13     102 .. 0.66

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 0.00014
    TIGR01193 477 ndvsy.syGygsevledislkikknekitlvGlsGsGkstlakl 519
                  +  ++ +  ++ +++e i + +++ne i lvG +G Gk+t ++ 
  MMETSP1061-20121228|44639_1  52 SSTTFaETNHALRLMESIAVCVRENEPILLVGETGCGKTTNIQQ 95 
                  3334413456678899************************8765 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   0.00015     0.017     352     385 ..      67     100 ..      48     108 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 0.00015
    TIGR03925 352 apvaldfaeephllvlGdsesGktallraiaeev 385
                  + +a+ ++e++ +l +G++++Gkt+ ++++a++ 
  MMETSP1061-20121228|44639_1  67 ESIAVCVRENEPILLVGETGCGKTTNIQQLAARC 100
                  567778899999999*************999875 PP

>> TIGR00382  clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.3   0.0      0.51        57     268     293 ..      42      67 ..      34      73 .. 0.81
   2 ?   10.2   0.0   0.00052     0.057     117     142 ..      76     101 ..      53     108 .. 0.78

  Alignments for each domain:
  == domain 1    score: 0.3 bits;  conditional E-value: 0.51
    TIGR00382 268 ekksiGfsaekkkkkkeeaellkkve 293
                  ++ksiGfs+++ ++  e ++ l+ +e
  MMETSP1061-20121228|44639_1  42 TTKSIGFSQQSSTTFAETNHALRLME 67 
                  5789******9999999888888766 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 0.00052
    TIGR00382 117 ksnilliGptGsGktllaqtlakeld 142
                  +  ill+G tG Gkt   q la++ +
  MMETSP1061-20121228|44639_1  76 NEPILLVGETGCGKTTNIQQLAARCE 101
                  557******************99876 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00017     0.019     459     512 ..      42      96 ..      33     103 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00017
    TIGR03375 459 reklkGeielknvsfkYpeeekaaLknvslkikpGekvaiiGriGsGKst.llkl 512
                  ++k  G  + ++ +f+  ++    ++++ + ++  e + ++G++G+GK+t +++l
  MMETSP1061-20121228|44639_1  42 TTKSIGFSQQSSTTFAETNHALRLMESIAVCVRENEPILLVGETGCGKTTnIQQL 96 
                  55555666777778888888889999***********************944444 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00021     0.024      16      53 ..      55      92 ..      42     101 .. 0.79

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00021
    TIGR02769 16 gllgkkqrkavldnvslsleeGetvallGrsGaGkstl 53
                 ++   ++   +++ + + ++e e + l+G++G+Gk+t 
  MMETSP1061-20121228|44639_1 55 TFAETNHALRLMESIAVCVRENEPILLVGETGCGKTTN 92
                 3444666678999**********************995 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.0   0.0   0.00023     0.026       2      31 ..      67      96 ..      66     104 .. 0.86

  Alignments for each domain:
  == domain 1    score: 12.0 bits;  conditional E-value: 0.00023
    TIGR01184  2 kdvdleikkgefislighsgcgkstllnli 31
                 + + + +++ e i l+g +gcgk+t ++ +
  MMETSP1061-20121228|44639_1 67 ESIAVCVRENEPILLVGETGCGKTTNIQQL 96
                 678999******************987655 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.0   0.00025     0.028      18      55 ..      60      97 ..      47     107 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 0.00025
    TIGR02324 18 GvklpvlkevsleveaGelvalsGksGaGkstllksly 55
                    l  ++++ + v++ e + l G++G Gk t ++ l 
  MMETSP1061-20121228|44639_1 60 NHALRLMESIAVCVRENEPILLVGETGCGKTTNIQQLA 97
                 35688999************************998875 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.0   0.00028     0.031     349     382 ..      64      97 ..      37     103 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 0.00028
    TIGR02868 349 evlkgvsldlepGervavvGasGaGKstLlalla 382
                  + ++ + + +++ e + +vG +G+GK+t ++ la
  MMETSP1061-20121228|44639_1  64 RLMESIAVCVRENEPILLVGETGCGKTTNIQQLA 97 
                  36788999999999**************887775 PP

>> TIGR02639  ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   0.0   0.00022     0.024     202     232 ..      72     102 ..      41     108 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 0.00022
    TIGR02639 202 crrkknnP.llvGepGvGktaiveGLakriae 232
                  c r  n P llvGe+G Gkt+ ++ La r + 
  MMETSP1061-20121228|44639_1  72 CVR-ENEPiLLVGETGCGKTTNIQQLAARCER 102
                  444.46662579*********99999998765 PP

>> TIGR01420  pilT_fam: twitching motility protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.0   0.00028     0.031     110     142 ..      65      96 ..      28     105 .. 0.76

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 0.00028
    TIGR01420 110 lpevlkelaekkrGlilvtGptGsGKsttlAsl 142
                  l e +  ++ +++  il++G+tG GK+t +  l
  MMETSP1061-20121228|44639_1  65 LMESIA-VCVRENEPILLVGETGCGKTTNIQQL 96 
                  444433.455667779999*********98765 PP

>> TIGR02782  TrbB_P: P-type conjugative transfer ATPase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   0.00034     0.038     127     159 ..      67      99 ..      54     107 .. 0.79

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 0.00034
    TIGR02782 127 dvlreavaarknilvvGGtgsGkttLanallae 159
                  + +   v+ ++ il+vG tg Gktt +  l a+
  MMETSP1061-20121228|44639_1  67 ESIAVCVRENEPILLVGETGCGKTTNIQQLAAR 99 
                  566667778888*************88777666 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   0.00044     0.049      12      44 ..      64      96 ..      50     104 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 0.00044
    TIGR03608 12 eilkklslkiekGelvaivGesGsGKstlLnil 44
                 ++++++ + + + e + +vGe G+GK+t +  l
  MMETSP1061-20121228|44639_1 64 RLMESIAVCVRENEPILLVGETGCGKTTNIQQL 96
                 567888889999999*************76655 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   0.00031     0.035     358     387 ..      67      96 ..      34     100 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.00031
    TIGR01194 358 GpidlriasGelvyivGenGcGkstlikll 387
                    i + + + e + +vGe GcGk+t i+ l
  MMETSP1061-20121228|44639_1  67 ESIAVCVRENEPILLVGETGCGKTTNIQQL 96 
                  4677888999999************98765 PP

>> TIGR01650  PD_CobS: cobaltochelatase, CobS subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   0.00034     0.037      59      94 ..      71     106 ..      41     109 .] 0.84

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 0.00034
    TIGR01650  59 agfaydrrvmvsgyhgtgksthieqvaarlnwplvr 94 
                       +  +++ g  g gk+t i+q+aar +  lv 
  MMETSP1061-20121228|44639_1  71 VCVRENEPILLVGETGCGKTTNIQQLAARCERTLVV 106
                  455567788999*****************9988876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       251  (0.0611897); expected 82.0 (0.02)
Passed bias filter:                      239  (0.0582643); expected 82.0 (0.02)
Passed Vit filter:                       111  (0.02706); expected 4.1 (0.001)
Passed Fwd filter:                        37  (0.00901999); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              37  [number of targets reported over threshold]
# CPU time: 0.23u 0.17s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 553.34
//
Query:       MMETSP1061-20121228|44672_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 423.75
//
Query:       MMETSP1061-20121228|44690_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-06   24.1   0.3    4.5e-06   24.1   0.2    1.1  1  TIGR01136 cysKM: cysteine synthases
    5.5e-06   23.9   0.1    5.5e-06   23.9   0.1    1.1  1  TIGR01138 cysM: cysteine synthase B
    7.3e-06   23.3   0.1    7.3e-06   23.3   0.1    1.2  1  TIGR01139 cysK: cysteine synthase A
     0.0011   16.0   0.2     0.0011   16.0   0.1    1.1  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
     0.0031   14.1   0.2     0.0031   14.1   0.2    1.1  1  TIGR01137 cysta_beta: cystathionine beta-synthase


Domain annotation for each model (and alignments):
>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.2   5.5e-09   4.5e-06      43      80 ..      32      67 .]      15      67 .] 0.88

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 5.5e-09
    TIGR01136 43 smildAekrgllkkgktiieatSGNtGiaLAmvaaakg 80
                 sm+l+A +r   + g  ++e tSG tGiaLA  +aa+g
  MMETSP1061-20121228|44690_1 32 SMVLRAVRRS--RTGGLVVEGTSGSTGIALATLCAARG 67
                 5777777665..67999*******************98 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.9   0.1   6.7e-09   5.5e-06      43      82 ..      30      67 .]       6      67 .] 0.87

  Alignments for each domain:
  == domain 1    score: 23.9 bits;  conditional E-value: 6.7e-09
    TIGR01138 43 alsmiveaekrGeikeGdvlieatsGntGialamvaalkG 82
                   sm+++a +r   + G  ++e tsG tGiala ++a++G
  MMETSP1061-20121228|44690_1 30 LESMVLRAVRRS--RTGGLVVEGTSGSTGIALATLCAARG 67
                 569*******97..79********************9987 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.3   0.1   8.9e-09   7.3e-06      43      80 ..      32      67 .]       6      67 .] 0.87

  Alignments for each domain:
  == domain 1    score: 23.3 bits;  conditional E-value: 8.9e-09
    TIGR01139 43 amiedaekegllkkgktiveatsGntGialamvaaarg 80
                 +m+ +a ++   + g  +ve tsG tGiala  +aarg
  MMETSP1061-20121228|44690_1 32 SMVLRAVRRS--RTGGLVVEGTSGSTGIALATLCAARG 67
                 5667776665..57889*******************98 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.1   1.3e-06    0.0011      56      81 ..      42      67 .]      17      67 .] 0.84

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 1.3e-06
    TIGR03945 56 kpgttiiESsSGnlaiaLamvcaalG 81
                 + g  ++E +SG+ +iaLa++caa+G
  MMETSP1061-20121228|44690_1 42 RTGGLVVEGTSGSTGIALATLCAARG 67
                 46789******************998 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.2   3.8e-06    0.0031      59      85 ..      41      67 .]      19      67 .] 0.86

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.8e-06
    TIGR01137 59 lkpgdtliePtsGntGiGlalvaaikG 85
                  + g+ ++e tsG tGi la  +a +G
  MMETSP1061-20121228|44690_1 41 SRTGGLVVEGTSGSTGIALATLCAARG 67
                 467999**************9999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.09u 0.18s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 384.49
//
Query:       MMETSP1061-20121228|44713_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       23  (0.00560702); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 452.53
//
Query:       MMETSP1061-20121228|44721_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|44737_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        1.3    6.8  13.7        2.5    6.0   9.5    1.5  1  TIGR02077 thr_lead_pep: thr operon leader peptide


Domain annotation for each model (and alignments):
>> TIGR02077  thr_lead_pep: thr operon leader peptide
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   9.5    0.0006       2.5       5      17 ..      42      52 ..      39      53 .] 0.76

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0006
    TIGR02077  5 SlittttiTtTiT 17
                 +  +t+tiT+TiT
  MMETSP1061-20121228|44737_1 42 T--ITITITITIT 52
                 5..8999999998 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.07u 0.16s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 304.15
//
Query:       MMETSP1061-20121228|44745_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 442.16
//
Query:       MMETSP1061-20121228|44754_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.15s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|44764_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.15s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 402.91
//
Query:       MMETSP1061-20121228|44782_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 545.95
//
Query:       MMETSP1061-20121228|44786_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.28
# Mc/sec: 236.67
//
Query:       MMETSP1061-20121228|44794_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 345.69
//
Query:       MMETSP1061-20121228|44789_1  [L=629]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        0.1    8.4   0.3       0.13    8.0   0.2    1.1  1  TIGR02865 spore_II_E: stage II sporulation protein E


Domain annotation for each model (and alignments):
>> TIGR02865  spore_II_E: stage II sporulation protein E
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.2   3.3e-05      0.13     695     761 ..     527     593 ..     507     596 .. 0.73

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 3.3e-05
    TIGR02865 695 kngDlivlvsDGvlegekeeegkeeWlvkvlkeektndPeeiaeellekal....elrkgkikDDmTviva 761
                  +++ +++l  DG+ +   + e+ +++   v+++ +t +P ei+ e+l++ +    + ++g   D mT++++
  MMETSP1061-20121228|44789_1 527 DEDEFLILGCDGIWDCLTN-EQAVDF---VMSRIDTKSPTEIGREMLDQIIsddpRVTQGIGGDNMTIMIV 593
                  4678*********999877.445555...5777889999999999998888333357888889****9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (629 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       163  (0.0397367); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.36
# Mc/sec: 2306.14
//
Query:       MMETSP1061-20121228|44807_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1984.72
//
Query:       MMETSP1061-20121228|44822_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 551.95
//
Query:       MMETSP1061-20121228|44832_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.0   0.0      0.019   12.7   0.0    1.2  1  TIGR01634 tail_P2_I: phage tail protein I


Domain annotation for each model (and alignments):
>> TIGR01634  tail_P2_I: phage tail protein I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   4.6e-06     0.019      54      91 ..       8      44 ..       5      59 .. 0.88

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 4.6e-06
    TIGR01634 54 stwpekvkrdvirsalliqrrkGtvkavrrvveslGgl 91
                 s+w++   r+ ir + +i++  G  +a+r+vv + G++
  MMETSP1061-20121228|44832_1  8 SDWSNPSVREAIRMSATIES-SGQCTALRHVVAPTGTT 44
                 89************999986.69***********9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 408.54
//
Query:       MMETSP1061-20121228|44857_1  [L=352]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (352 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1720.75
//
Query:       MMETSP1061-20121228|44862_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 680.79
//
Query:       MMETSP1061-20121228|44863_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.16s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 305.97
//
Query:       MMETSP1061-20121228|44864_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.26
# Mc/sec: 583.80
//
Query:       MMETSP1061-20121228|44861_1  [L=563]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-10   36.9   0.0      3e-10   36.4   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    9.8e-05   19.7   0.1    0.00017   19.0   0.0    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.4   0.0   1.5e-13     3e-10      47     185 ..     313     445 ..     309     451 .. 0.85

  Alignments for each domain:
  == domain 1    score: 36.4 bits;  conditional E-value: 1.5e-13
    TIGR03903  47 GeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqL...R..gepvtaksDlYaWGLivleCLtG 185
                  G+ +  +l ++ e  +G  l++ + ++  ++ +  ++ m+  ++al   h++  +h D+kP n +v  +d++   k+ DFG++    + ++           v GsP Y aPe L   R   +    ++D+Y+ G+++ e L G
  MMETSP1061-20121228|44861_1 313 GDNDARYLCTILEICDGGDLADFVDNHEMMTEKLAAKYMMDAINALMYLHSRNTIHCDIKPANWLVNGKDEDAVVKLADFGMAV-TNDSKE----------IVGGSPVYMAPEHLlawRdmTDNFDHRTDIYSLGVVLYELLMG 445
                  556667899************************************************************************964.344443..........2558*********944431134555789***********9988 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.0   0.0   8.3e-08   0.00017      80     143 ..     328     402 ..     316     410 .. 0.77

  Alignments for each domain:
  == domain 1    score: 19.0 bits;  conditional E-value: 8.3e-08
    TIGR03724  80 egkklkdlleekel.......ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkkskeve 143
                  +g +l d ++++e+       +++ ++ +++  lH+ + +h D+ ++N +v+    d  + l DfG++ ++++ e
  MMETSP1061-20121228|44861_1 328 DGGDLADFVDNHEMmteklaaKYMMDAINALMYLHSRNTIHCDIKPANWLVNgkdeDAVVKLADFGMAVTNDSKE 402
                  555555555555545555566999999999*********************754433446799*****9988776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (563 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.42
# Mc/sec: 1769.28
//
Query:       MMETSP1061-20121228|44891_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.44
# Mc/sec: 245.98
//
Query:       MMETSP1061-20121228|44895_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 389.02
//
Query:       MMETSP1061-20121228|44898_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.11s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 455.96
//
Query:       MMETSP1061-20121228|44899_1  [L=582]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (582 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.32
# Mc/sec: 2400.55
//
Query:       MMETSP1061-20121228|44916_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1279.72
//
Query:       MMETSP1061-20121228|44932_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 811.73
//
Query:       MMETSP1061-20121228|44973_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 488.85
//
Query:       MMETSP1061-20121228|44972_1  [L=172]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (172 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 1081.05
//
Query:       MMETSP1061-20121228|44976_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 833.93
//
Query:       MMETSP1061-20121228|44979_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|45008_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 562.39
//
Query:       MMETSP1061-20121228|45005_1  [L=471]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (471 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1883.84
//
Query:       MMETSP1061-20121228|45018_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 379.47
//
Query:       MMETSP1061-20121228|45023_1  [L=198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1136.25
//
Query:       MMETSP1061-20121228|45043_1  [L=401]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.24    8.6   7.9       0.35    8.0   5.5    1.1  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
        1.6    6.3  11.1        8.9    4.0   6.1    2.5  1  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   5.5   0.00017      0.35     132     203 ..     320     378 ..     314     383 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 0.00017
    TIGR02349 132 kGvekeielerkekCetCkGsGakkgsklktCktCgGtGqvrkqqgtllgffqsqqtCseCkGeGkiikekC 203
                  +G e + +   +e C+ C G+  +      tC++C+G G+ +   +        +  C++C+ +G +i + C
  MMETSP1061-20121228|45043_1 320 NGNESSEDEGDREPCTVCGGTRRT------TCPNCDGVGTYVAMGN-------RTVRCTSCNARGYVICRSC 378
                  566666666678899999998654......9********8766664.......6889*****9999998888 PP

>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   6.1    0.0043       8.9       2      33 ..     342     369 ..     342     374 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.0043
    TIGR02098   2 riqCPnCktsyrVddsqlginggkVRCgkCgh 33 
                  r++CPnC  +       +++ +++VRC++C+ 
  MMETSP1061-20121228|45043_1 342 RTTCPNCDGV----GTYVAMGNRTVRCTSCNA 369
                  5788888874....66788999********96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (401 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1653.99
//
Query:       MMETSP1061-20121228|45052_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 671.42
//
Query:       MMETSP1061-20121228|45055_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|45059_1  [L=403]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (403 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       168  (0.0409556); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.32
# Mc/sec: 1662.24
//
Query:       MMETSP1061-20121228|45075_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.1e-09   33.5   0.0    8.9e-09   33.3   0.0    1.1  1  TIGR01359 UMP_CMP_kin_fam: UMP-CMP kinase family
    5.2e-08   30.6   0.0    6.3e-08   30.3   0.0    1.1  1  TIGR01360 aden_kin_iso1: adenylate kinase
    3.4e-06   24.7   0.2    9.7e-05   19.9   0.1    2.0  1  TIGR01351 adk: adenylate kinases


Domain annotation for each model (and alignments):
>> TIGR01359  UMP_CMP_kin_fam: UMP-CMP kinase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0   6.5e-12   8.9e-09     108     181 ..       4      83 ..       1      87 [. 0.80

  Alignments for each domain:
  == domain 1    score: 33.3 bits;  conditional E-value: 6.5e-12
    TIGR01359 108 fvlfldcseevmvkrllkrgqss...G..rvddnieslkkrletykeetlpvieyfek.knkvkkidaeksveevfeeve 181
                    l+l+c+++v+++r+l+r ++s   G  r ddni++  krl+ y++     +++ ++ +  v+++d++ + ++v+e++ 
  MMETSP1061-20121228|45075_1   4 LALHLQCDDTVLIERILNRREESmqeGkvRDDDNIKTALKRLRNYHKYLNVTLDWLREnHVPVINLDCDCPPDQVWEQLL 83 
                  679***************9887644444488***************9988888877540446788888889999999876 PP

>> TIGR01360  aden_kin_iso1: adenylate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.3   0.0   4.6e-11   6.3e-08     107     182 ..       2      83 ..       1      87 [. 0.87

  Alignments for each domain:
  == domain 1    score: 30.3 bits;  conditional E-value: 4.6e-11
    TIGR01360 107 aklvlyldvsedtlvkrllkraetsa.....rvddnektikkrletykkatepvieyy.eskgkllkinaegtvddvflevv 182
                  ++l+l+l++ +  l++r+l+r e s      r+ddn kt  krl+ y+k  +  +++  e++  + +++ +  +d+v+ ++ 
  MMETSP1061-20121228|45075_1   2 PELALHLQCDDTVLIERILNRREESMqegkvRDDDNIKTALKRLRNYHKYLNVTLDWLrENHVPVINLDCDCPPDQVWEQLL 83 
                  799******************99997777889************************87245566778888888999999876 PP

>> TIGR01351  adk: adenylate kinases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.1   7.1e-08   9.7e-05     149     209 ..      23      84 ..       1      87 [. 0.83

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 7.1e-08
    TIGR01351 149 ddctaellkqReDDteevvkkRlevYkeqteplieyYkkkgk.lveidaekkieevlkeile 209
                   ++++++ k R+DD+ ++  kRl+ Y++  +  +++ +++++ ++++d + + ++v++++l+
  MMETSP1061-20121228|45075_1  23 REESMQEGKVRDDDNIKTALKRLRNYHKYLNVTLDWLRENHVpVINLDCDCPPDQVWEQLLA 84 
                  4566777889**************************9988763788************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      168  (0.0409556); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.13u 0.17s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 653.66
//
Query:       MMETSP1061-20121228|45094_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 299.98
//
Query:       MMETSP1061-20121228|45102_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 450.96
//
Query:       MMETSP1061-20121228|45120_1  [L=645]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-19   68.5   0.0    5.2e-10   36.8   0.0    3.2  3  TIGR03548 mutarot_permut: cyclically-permuted mutatrotase family protein
    9.3e-12   42.5   0.1    2.3e-06   24.8   0.0    3.6  4  TIGR03547 muta_rot_YjhT: mutatrotase, YjhT family


Domain annotation for each model (and alignments):
>> TIGR03548  mutarot_permut: cyclically-permuted mutatrotase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.7   0.0   4.8e-09   9.8e-06     161     239 ..      74     154 ..      48     176 .. 0.87
   2 !   36.8   0.0   2.5e-13   5.2e-10      67     203 ..     226     364 ..     221     371 .. 0.84
   3 !    5.6   0.0   0.00075       1.5     158     193 ..     369     405 ..     364     408 .. 0.79

  Alignments for each domain:
  == domain 1    score: 22.7 bits;  conditional E-value: 4.8e-09
    TIGR03548 161 aRvqpvavalknelYvfg..ggdaeaytdgyayslkknkWekvaavlsdeepisllGaasvklneskllviGGvnkkvfed 239
                  +R  + +v l+++lY+fg  gg +   +d y +++ + +We+++ +  ++       +  v+ +  +++++GG+n +++ +
  MMETSP1061-20121228|45120_1  74 PRSGAASVVLNHKLYIFGgfGGGSGRLDDFYSFDFATSTWEEIKPLGEKKPGCRENNGLVVSSSSRAIILFGGYNGNRWLN 154
                  899999************9978888899*****************999999999999999***************999975 PP

  == domain 2    score: 36.8 bits;  conditional E-value: 2.5e-13
    TIGR03548  67 asvsveegivyvgGsneeeslsdvlrlsldekkealivetlpslplaldngvatyldgk.lyvalgnangkpsnklyllnletkeleelpdfPge..aRvqpvavalknelYvfgggdae.aytdgyayslkknkWekvaa 203
                  +sv+ +++ +  gG +  + l+d++ + ++ +k    +e+l+ lp   +   a  +d++ +y+ +g   ++  + +++++l+t  ++++p+   +  +R    +v  +n+l +fgg + +    d  +y+++++ W +v+ 
  MMETSP1061-20121228|45120_1 226 VSVTHNNNFILWGGFDGTDWLNDMYIFNFESSKW-TEIEQLGTLPSRRSC-PAWAKDENfIYLHGGYDGNERKDDFFSFCLDTCTWTQMPNRGNKpsPRYFHSCVLFENKLIMFGGYSGSrRLSDMHTYDFRSDFWSEVDL 364
                  69999************************99995.889*******98665.555666552788888766777999***************98766559*****************87765156799***********9986 PP

  == domain 3    score: 5.6 bits;  conditional E-value: 0.00075
    TIGR03548 158 PgeaRvqpvavalknelYvfgggda.eaytdgyaysl 193
                  P ++R   va+ +kn+lYvf+g +  ++  d y+  l
  MMETSP1061-20121228|45120_1 369 PPSGRSSLVAQVYKNHLYVFAGYNGtSVMNDMYKIRL 405
                  7889999*************98775156677777655 PP

>> TIGR03547  muta_rot_YjhT: mutatrotase, YjhT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.8   0.0   1.1e-09   2.3e-06      53     147 ..      74     164 ..      63     179 .. 0.76
   2 ?   -0.9   0.0     0.074   1.5e+02      99     129 ..     213     242 ..     208     258 .. 0.79
   3 !    3.0   0.0    0.0049        10      83     130 ..     245     293 ..     221     306 .. 0.69
   4 !    9.3   0.0     6e-05      0.12      57     130 ..     325     394 ..     306     407 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.8 bits;  conditional E-value: 1.1e-09
    TIGR03547  53 areqavaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWekle...trsPvgl..lGasaveleegkililGGvnkeiFdkyladisaadkdke 147
                  +r++a+++v++ kly+FgG g          ldd y++d ++ +We+++    ++P      G   v+ + + i+++GG+n    +++l+d+ + d +++
  MMETSP1061-20121228|45120_1  74 PRSGAASVVLNHKLYIFGGFGGG-----SGRLDDFYSFDFATSTWEEIKplgEKKPGCRenNGL-VVSSSSRAIILFGGYNG---NRWLNDLWSFDVTRN 164
                  799******************98.....44589*************987333456643310333.345778999*******7...567777766666555 PP

  == domain 2    score: -0.9 bits;  conditional E-value: 0.074
    TIGR03547  99 kletrsPvgllGasaveleegkililGGvnk 129
                   ++++ P    G ++v +++++ +++GG++ 
  MMETSP1061-20121228|45120_1 213 SMSRKRPCCRFGYVSV-THNNNFILWGGFDG 242
                  5778889999999999.89999999999985 PP

  == domain 3    score: 3.0 bits;  conditional E-value: 0.0049
    TIGR03547  83 vlddvykydpkknsWeklet..rsPvgllGasaveleegkililGGvnke 130
                   l+d y ++ ++ +W+++e+  + P       a   +e+ i++ GG++ +
  MMETSP1061-20121228|45120_1 245 WLNDMYIFNFESSKWTEIEQlgTLPSRR-SCPAWAKDENFIYLHGGYDGN 293
                  5789999999999999888622333332.233444567778888888743 PP

  == domain 4    score: 9.3 bits;  conditional E-value: 6e-05
    TIGR03547  57 avaavvdgklyvFgGvgkeesesslqvlddvykydpkknsWekle...trsPvgllGasaveleegkililGGvnke 130
                    +++ ++kl +FgG   +      + l+d ++yd +++ W++++   +++P g +  +a ++ +++++++ G+n  
  MMETSP1061-20121228|45120_1 325 HSCVLFENKLIMFGGYSGS------RRLSDMHTYDFRSDFWSEVDlsnSNPPSGRSSLVA-QVYKNHLYVFAGYNGT 394
                  567889999999*998777......6689*************987221344555554444.488999*******964 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (645 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.28
# Mc/sec: 2935.62
//
Query:       MMETSP1061-20121228|45125_1  [L=445]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (445 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.30
# Mc/sec: 1957.84
//
Query:       MMETSP1061-20121228|45139_1  [L=103]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (103 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 617.95
//
Query:       MMETSP1061-20121228|45141_1  [L=126]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (126 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 755.94
//
Query:       MMETSP1061-20121228|45143_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0019   15.4   0.1     0.0025   15.0   0.1    1.2  1  TIGR03516 ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated


Domain annotation for each model (and alignments):
>> TIGR03516  ppisom_GldI: peptidyl-prolyl isomerase, gliding motility-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.1   6.1e-07    0.0025      69     124 ..       4      59 ..       2      71 .. 0.94

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 6.1e-07
    TIGR03516  69 kGfwyaykkkdttetktpetgDlvsfeyeikaldgdviyskeelgpktykvdqedl 124
                   G +y y+   ++++ ++e  Dl  f+y  ++ +++  ++ +      + ++q+++
  MMETSP1061-20121228|45143_1   4 GGCHYQYNSTRKGDSDASESSDLCDFDYYHRDCEDNICVAGAIFNYSAKLIEQQQM 59 
                  5899************************************9999999999999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 590.81
//
Query:       MMETSP1061-20121228|45146_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        83  (0.020234); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 626.95
//
Query:       MMETSP1061-20121228|45153_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 448.76
//
Query:       MMETSP1061-20121228|45163_1  [L=721]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.6   1.3    0.00094   17.0   0.2    2.2  2  TIGR03296 M6dom_TIGR03296: M6 family metalloprotease domain


Domain annotation for each model (and alignments):
>> TIGR03296  M6dom_TIGR03296: M6 family metalloprotease domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   0.0     0.017        68      15      82 ..     194     264 ..     182     279 .. 0.68
   2 !   17.0   0.2   2.3e-07   0.00094     154     281 ..     304     436 ..     286     440 .. 0.70

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.017
    TIGR03296  15 vedllfgtfegenlgsvrdYyeeqSgGkftv..........tgdvvgwyrmphpaayYgknngdtsdekardlvkeal 82 
                   +d++fgt  ++ +  ++  y++ S+G++++          t++v g ++++ +         d+s  +++d+++ea 
  MMETSP1061-20121228|45163_1 194 LSDKIFGT--NGDIANLKSQYDACSHGQLQFqpfqgmtsggTNVVDGVIEVNINMNVA-----DSSRYAVEDAMEEAA 264
                  56889999..999999999999999999999999888888866666666666553322.....334444444444444 PP

  == domain 2    score: 17.0 bits;  conditional E-value: 2.3e-07
    TIGR03296 154 lvgdytiqpedagvgVlaHElGHdlglPDlYdtsydgggetpvGdWslMssGswagkgstppdmkawlkeklgWlneqsvatkrgk............ttl..akagavkvlklavtknanealllenrtkkgvdaalpaeG 281
                  +++ ++    ++ + + +HE+GH+lgl +  + + + g+     + ++M+  s+ ++ +    +++ + ++lgW ++++v+ +                ++  ++++ ++v+k+++    ++ l++ + +kkg+ + +p +G
  MMETSP1061-20121228|45163_1 304 WLAVFNDGFCES-LTTQVHEIGHNLGLAHAGKDNISYGD-----KSGMMGF-SYRQDNGPLQCFNPAKSYQLGWYDDKVVEIDPEDgtwvgtligavdYKNdsVDQNSKVVVKITS--PDRTNLYVGYNRKKGMNSGVPLAG 436
                  555444444444.67889**********98875433333.....3568888.8887755556666777789************999888876665543222545555555555544..666899999999999998888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (721 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.30
# Mc/sec: 3172.14
//
Query:       MMETSP1061-20121228|45176_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 326.83
//
Query:       MMETSP1061-20121228|45167_1  [L=577]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (577 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.34
# Mc/sec: 2239.93
//
Query:       MMETSP1061-20121228|45193_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 421.11
//
Query:       MMETSP1061-20121228|45194_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 797.43
//
Query:       MMETSP1061-20121228|45223_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.082    9.7   4.6      0.086    9.6   3.2    1.0  1  TIGR01622 SF-CC1: splicing factor, CC1-like family
       0.11    8.8   4.9       0.12    8.7   3.4    1.0  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01622  SF-CC1: splicing factor, CC1-like family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   3.2   4.2e-05     0.086      26      49 ..      26      47 ..      11      54 .. 0.46

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 4.2e-05
    TIGR01622 26 srersRdrsrdRersrskerdrdf 49
                 +  r R+ sr+R rsrs++r++d+
  MMETSP1061-20121228|45223_1 26 G--RGRSSSRSRSRSRSRSREKDH 47
                 2..333333333333333333333 PP

>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   3.4   5.7e-05      0.12      14      35 ..      26      45 ..      12      53 .. 0.49

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 5.7e-05
    TIGR01642 14 erdrdkskeRsRkRsrdrsrdR 35
                 +r r  s+ RsR Rsr+rsr++
  MMETSP1061-20121228|45223_1 26 GRGR--SSSRSRSRSRSRSREK 45
                 3333..4444444444444433 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 446.25
//
Query:       MMETSP1061-20121228|45225_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|45226_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0016   15.1   0.0     0.0017   15.1   0.0    1.1  1  TIGR02766 crypt_chrom_pln: cryptochrome, plant family


Domain annotation for each model (and alignments):
>> TIGR02766  crypt_chrom_pln: cryptochrome, plant family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.1   0.0   4.1e-07    0.0017     445     471 ..       2      28 ..       1      39 [. 0.85

  Alignments for each domain:
  == domain 1    score: 15.1 bits;  conditional E-value: 4.1e-07
    TIGR02766 445 apesvlkaagvelgsnypkpivdldaa 471
                  ap s+l+ agv lg +yp+p+v+ ++ 
  MMETSP1061-20121228|45226_1   2 APPSILENAGVRLGRDYPHPLVEHKII 28 
                  899*******************97754 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       124  (0.0302292); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 353.97
//
Query:       MMETSP1061-20121228|45229_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.38
# Mc/sec: 1413.67
//
Query:       MMETSP1061-20121228|45254_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|45290_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 674.61
//
Query:       MMETSP1061-20121228|45300_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|45304_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|45317_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.26
# Mc/sec: 1030.53
//
Query:       MMETSP1061-20121228|45318_1  [L=1628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-09   32.7  10.6    1.6e-08   31.9   7.4    1.3  1  TIGR03122 one_C_dehyd_C: formylmethanofuran dehydrogenase subunit C
  ------ inclusion threshold ------
       0.01   12.6   0.3       0.24    8.1   0.3    2.2  2  TIGR02151 IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
      0.021   11.3   0.2       0.04   10.4   0.1    1.4  1  TIGR03966 actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system


Domain annotation for each model (and alignments):
>> TIGR03122  one_C_dehyd_C: formylmethanofuran dehydrogenase subunit C
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.9   7.4   1.2e-11   1.6e-08      63     207 ..    1366    1515 ..    1335    1556 .. 0.83

  Alignments for each domain:
  == domain 1    score: 31.9 bits;  conditional E-value: 1.2e-11
    TIGR03122   63 vlegdvsrvkriGekmsaGeivv..egdvgahvGae.mkgGkivvegnadswlgaemkgGeievkGn.agdyvG..sayrgekr..GmsgGkiiveGnagdelGelmrrGeiliegnagilagaemngGtiaveGkvgervgaemkkGtivvg 207 
                   +l+g++ rv+  G++  +G+i v  eg++g+  Ga  + g ++ + g+ ++++g+ m+gGei+v     +++v   s++ g+++  G +gG    +G +g++   + + G   ++  ag  +   m+gG++++ G+vg+ vga+m  G   ++
  MMETSP1061-20121228|45318_1 1366 MLAGNIARVH--GNSGFKGQINVqfEGSAGQSFGAFtLPGLSLRLVGEGNDYVGKGMHGGEITVVPSpEANFVAadSSIIGNAClyGATGGDFHANGRTGERFCVR-NSGAFAVAEGAGDHCCEYMTGGVVVMLGTVGRNVGAGMTGGIGYFY 1515
                   6778888876..88889999988447********86266779********************987651679997336889998656****************9765.7899999999*****************************9975554 PP

>> TIGR02151  IPP_isom_2: isopentenyl-diphosphate delta-isomerase, type 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.1   0.3   0.00018      0.24     204     289 ..    1117    1195 ..    1095    1203 .. 0.76
   2 ?    1.8   0.0     0.014        20     292     329 ..    1225    1262 ..    1199    1270 .. 0.82

  Alignments for each domain:
  == domain 1    score: 8.1 bits;  conditional E-value: 0.00018
    TIGR02151  204 agvkaidva.GaGGTsfakvEnarakeskkkalaeafsdwGiptaasllevrsaakkleliasGGlrsgldvakalaLGAdlvglar 289 
                   a +++i+++ G GGT  +     ++            +++G+  a+s l  ++  +++ l   GG+r+g dv+ a  LGA+ vg+  
  MMETSP1061-20121228|45318_1 1117 ADADVIQISgGDGGTGASPLSSIKHAG--------GPWELGLAEAHSALYENNLRDRVVLRVDGGIRTGRDVVIASLLGAEQVGFGT 1195
                   555566665235666655555555443........348899999998888888788999999*********************9865 PP

  == domain 2    score: 1.8 bits;  conditional E-value: 0.014
    TIGR02151  292 Lkaaekegeeavievlekikeelkvamfllgaknieel 329 
                   L++    ++e+v++++e ++ee++ +m  lg+k+++++
  MMETSP1061-20121228|45318_1 1225 LRKKFPGTPEHVVNFFEFVAEEVRGLMAHLGYKKLDDI 1262
                   555555789*************************9987 PP

>> TIGR03966  actino_HemFlav: heme/flavin dehydrogenase, mycofactocin system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.4   0.1   2.9e-05      0.04     299     332 ..    1162    1195 ..    1131    1206 .. 0.86

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 2.9e-05
    TIGR03966  299 vGdqvevlldGGirrGsdvvkalalGaravliGr 332 
                   + d+v + +dGGir G dvv a  lGa  v  G 
  MMETSP1061-20121228|45318_1 1162 LRDRVVLRVDGGIRTGRDVVIASLLGAEQVGFGT 1195
                   567888899******************9998776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.70u 0.15s 00:00:00.85 Elapsed: 00:00:00.60
# Mc/sec: 3581.30
//
Query:       MMETSP1061-20121228|45348_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|45342_1  [L=448]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047    9.3   0.0       0.11    8.0   0.0    1.5  2  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.0   0.0   2.7e-05      0.11      83     130 ..     189     241 ..     183     251 .. 0.75
   2 ?   -3.0   0.0     0.057   2.4e+02     143     161 ..     287     305 ..     278     308 .. 0.79

  Alignments for each domain:
  == domain 1    score: 8.0 bits;  conditional E-value: 2.7e-05
    TIGR03903  83 rLmlqvLDalaaahd.aGvvhRDLkPqnimvsaad....veshakvLDFGiga 130
                  +++ q+L a+   h+ a v hRD+k  n m   +     ++   +v+DFG++ 
  MMETSP1061-20121228|45342_1 189 NIIFQILTAFKIIHEdARVCHRDMKASNFMFVRKPsflpNSLDLRVIDFGLSK 241
                  6789**********725699*********986654111134456899**9986 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.057
    TIGR03903 143 ltrttevlGsPaYaaPeqL 161
                      t  +G+P Y aPe L
  MMETSP1061-20121228|45342_1 287 CHYMTSAVGAPYYVAPEVL 305
                  5566789**********87 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (448 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.24
# Mc/sec: 2463.80
//
Query:       MMETSP1061-20121228|45345_1  [L=567]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (567 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       183  (0.0446124); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 2414.12
//
Query:       MMETSP1061-20121228|45367_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 729.41
//
Query:       MMETSP1061-20121228|45363_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1724.96
//
Query:       MMETSP1061-20121228|45371_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 583.53
//
Query:       MMETSP1061-20121228|45381_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1141.71
//
Query:       MMETSP1061-20121228|45398_1  [L=147]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (147 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 923.92
//
Query:       MMETSP1061-20121228|45401_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       210  (0.0511945); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.28
# Mc/sec: 1847.85
//
Query:       MMETSP1061-20121228|45412_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 339.40
//
Query:       MMETSP1061-20121228|45419_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 467.96
//
Query:       MMETSP1061-20121228|45446_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 336.57
//
Query:       MMETSP1061-20121228|45438_1  [L=393]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (393 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1921.17
//
Query:       MMETSP1061-20121228|45454_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 270.58
//
Query:       MMETSP1061-20121228|45458_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 955.35
//
Query:       MMETSP1061-20121228|45460_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 298.41
//
Query:       MMETSP1061-20121228|45481_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.029   11.5   0.0      0.039   11.1   0.0    1.1  1  TIGR02236 recomb_radA: DNA repair and recombination protein RadA


Domain annotation for each model (and alignments):
>> TIGR02236  recomb_radA: DNA repair and recombination protein RadA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   9.5e-06     0.039      52     104 ..      13      63 ..       7      69 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 9.5e-06
    TIGR02236  52 aareaadlggfetaaevlerrkkvkklttgskeldellGGGietqaitelfGe 104
                  a+   ad+  +++a++ +++r  +  + t s+++++llGG  + + +te++G 
  MMETSP1061-20121228|45481_1  13 ASVVTADVCVYHSATDNIDER--ILSVLTHSRDVEDLLGGKENQNLVTEFIGF 63 
                  556677888888888877765..889999***********999999****996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 641.95
//
Query:       MMETSP1061-20121228|45492_1  [L=943]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (943 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.43
# Mc/sec: 2894.55
//
Query:       MMETSP1061-20121228|45509_1  [L=335]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (335 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       264  (0.0643588); expected 82.0 (0.02)
Passed bias filter:                      161  (0.0392491); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.18s 00:00:00.37 Elapsed: 00:00:00.32
# Mc/sec: 1381.76
//
Query:       MMETSP1061-20121228|45521_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 448.76
//
Query:       MMETSP1061-20121228|45537_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 539.96
//
Query:       MMETSP1061-20121228|45539_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.17s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 452.53
//
Query:       MMETSP1061-20121228|45550_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 680.79
//
Query:       MMETSP1061-20121228|45554_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 347.34
//
Query:       MMETSP1061-20121228|45563_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 833.93
//
Query:       MMETSP1061-20121228|45567_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 565.67
//
Query:       MMETSP1061-20121228|45568_1  [L=479]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (479 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       246  (0.0599707); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.11s 00:00:00.63 Elapsed: 00:00:00.57
# Mc/sec: 1090.05
//
Query:       MMETSP1061-20121228|45577_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-18   63.4   0.1      5e-18   63.3   0.0    1.1  1  TIGR00357 TIGR00357: methionine-R-sulfoxide reductase


Domain annotation for each model (and alignments):
>> TIGR00357  TIGR00357: methionine-R-sulfoxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.3   0.0   1.2e-21     5e-18      86     128 ..       4      46 ..       1      52 [. 0.91

  Alignments for each domain:
  == domain 1    score: 63.3 bits;  conditional E-value: 1.2e-21
    TIGR00357  86 irtevrskradahlGhvfddGPektGkryCinsaalkfiplee 128
                   rte  + ++ +hlGhvf+dGPe+tG+ryC+n+aa++f   +e
  MMETSP1061-20121228|45577_1   4 PRTECVCSECGGHLGHVFEDGPEPTGQRYCMNGAAMQFYRDSE 46 
                  59************************************87655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 345.20
//
Query:       MMETSP1061-20121228|45586_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.13s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|45601_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.24
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|45622_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 521.96
//
Query:       MMETSP1061-20121228|45628_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 818.33
//
Query:       MMETSP1061-20121228|45629_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.10s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 815.93
//
Query:       MMETSP1061-20121228|45623_1  [L=740]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0002   18.9   0.0      0.035   11.6   0.0    2.4  2  TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
     0.0035   14.2   0.3      0.041   10.7   0.0    2.3  2  TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA


Domain annotation for each model (and alignments):
>> TIGR03598  GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    4.7   0.0    0.0023       4.6      13      42 ..      21      50 ..      14      56 .. 0.84
   2 !   11.6   0.0   1.7e-05     0.035      65     144 ..     149     230 ..     138     240 .. 0.77

  Alignments for each domain:
  == domain 1    score: 4.7 bits;  conditional E-value: 0.0023
    TIGR03598 13 lpedklpeiafaGrSNvGKSsliNaLtnrk 42
                   + +lp+i+++G   +GKSs++  +++r 
  MMETSP1061-20121228|45623_1 21 NTQLDLPQIVVVGGQSSGKSSVLEGIVGRS 50
                 5667899****************9998876 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1.7e-05
    TIGR03598  65 elrlvDlPGYG...yakvskeekekwqklieeYLekrenLkgvvllvDirhelkelDlellellkeakipvlvvltKaDklkk 144
                   l+lvDlPG         +++ +e++q++i e++++ +++   v    + +  +++ l++ + ++ ++ +++ vltK+D ++ 
  MMETSP1061-20121228|45623_1 149 ALTLVDLPGITkvpVGDQPDNIEEQIQEMILEFISNPNAIILAVTAANTDV-ANSDALQMAKAVDPYGNRTIGVLTKLDLMDP 230
                  578*****986211345578899*************999876666555544.4445579********************8765 PP

>> TIGR03594  GTPase_EngA: ribosome-associated GTPase EngA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0     0.022        45     176     197 ..      27      48 ..       5      52 .. 0.71
   2 !   10.7   0.0     2e-05     0.041      20     127 ..     119     234 ..     117     260 .. 0.73

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.022
    TIGR03594 176 ikiaiiGrpNvGKStLvNallg 197
                   +i ++G   +GKS+ +  ++g
  MMETSP1061-20121228|45623_1  27 PQIVVVGGQSSGKSSVLEGIVG 48 
                  4677777777777777776665 PP

  == domain 2    score: 10.7 bits;  conditional E-value: 2e-05
    TIGR03594  20 lvkkrkAivedtpgvTRDrkygeaelkg.kefiliDTgGl.....eeeedelekeireqaelaieeadvilfvvda.reglteeD.eeiaklLrkskkpvilvvNKvdnkkeeaea 127
                  +v++ + ++ + +g+  D  + ++   +   ++l+D +G+      ++ d++e++i+e +   i++ ++i++ v a ++ + ++D  ++ak +  +++++i v+ K+d ++  ++a
  MMETSP1061-20121228|45623_1 119 IVRETDRLTGSNKGISNDPISLKIFSPHvLALTLVDLPGItkvpvGDQPDNIEEQIQEMILEFISNPNAIILAVTAaNTDVANSDaLQMAKAVDPYGNRTIGVLTKLDLMDPGTDA 234
                  55666666777777777777766654333788899999998877667888899999999999998888777666551445555552588999999999999999998877665555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (740 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.35u 0.17s 00:00:00.52 Elapsed: 00:00:00.39
# Mc/sec: 2504.41
//
Query:       MMETSP1061-20121228|45648_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 221.98
//
Query:       MMETSP1061-20121228|45650_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      7e-05   19.2   0.8    7.8e-05   19.1   0.6    1.0  1  TIGR00906 2A0303: cationic amino acid transport permease


Domain annotation for each model (and alignments):
>> TIGR00906  2A0303: cationic amino acid transport permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.6   1.9e-08   7.8e-05     548     574 ..      36      62 ..      32      64 .] 0.93

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 1.9e-08
    TIGR00906 548 vafkvPlvPflPalsilvniyllvqld 574
                   +fkvPl PflP ++i +n yl+ ql+
  MMETSP1061-20121228|45650_1  36 NIFKVPLCPFLPLVGIYLNWYLISQLE 62 
                  68**********************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|45674_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|45680_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.5e-24   82.2   0.0    8.9e-24   82.0   0.0    1.0  1  TIGR01249 pro_imino_pep_1: prolyl aminopeptidase
    5.3e-07   27.3   0.0      6e-07   27.1   0.0    1.0  1  TIGR01250 pro_imino_pep_2: proline-specific peptidases


Domain annotation for each model (and alignments):
>> TIGR01249  pro_imino_pep_1: prolyl aminopeptidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.0   0.0   4.3e-27   8.9e-24      31      92 ..       5      66 ..       2      72 .. 0.96

  Alignments for each domain:
  == domain 1    score: 82.0 bits;  conditional E-value: 4.3e-27
    TIGR01249 31 vflhGGPGsGtdeecrkffdpevyrivlldqrGaGkskphaileenttwdlvadieklrekl 92
                 +flhGGPG+G+ ++  +ffdp +y +vlldqrGaG+s+p  ++e+nt ++lv d e++r++l
  MMETSP1061-20121228|45680_1  5 LFLHGGPGAGCFPNHARFFDPSKYTVVLLDQRGAGRSTPPGCVEDNTLDNLVEDCERVRKAL 66
                 8**********************************************************998 PP

>> TIGR01250  pro_imino_pep_2: proline-specific peptidases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   2.9e-10     6e-07      28      94 ..       4      67 ..       1      71 [. 0.88

  Alignments for each domain:
  == domain 1    score: 27.1 bits;  conditional E-value: 2.9e-10
    TIGR01250 28 llvlHGGPgssheyleslkellke.gvevilYDQLGsgkSdqPddsdeklltidrfvdEleevrekLa 94
                  l lHGGPg  +  + + +++++    +v+l DQ G+g+S  P   +    t+d  v++ e vr++L 
  MMETSP1061-20121228|45680_1  4 ALFLHGGPGAGC--FPNHARFFDPsKYTVVLLDQRGAGRSTPPGCVE--DNTLDNLVEDCERVRKALL 67
                 589******998..7788888888789****************8854..58**************995 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 604.37
//
Query:       MMETSP1061-20121228|45716_1  [L=181]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (181 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 853.22
//
Query:       MMETSP1061-20121228|45729_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.21
# Mc/sec: 402.25
//
Query:       MMETSP1061-20121228|45750_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        19  (0.00463189); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 208.98
//
Query:       MMETSP1061-20121228|45755_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.34
# Mc/sec: 430.91
//
Query:       MMETSP1061-20121228|45746_1  [L=324]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (324 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.31
# Mc/sec: 1379.50
//
Query:       MMETSP1061-20121228|45785_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        34  (0.00828864); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 580.75
//
Query:       MMETSP1061-20121228|45796_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.025   12.8   0.0      0.027   12.7   0.0    1.2  1  TIGR04159 methbact_MbnB: methanobactin biosynthesis cassette protein MbnB


Domain annotation for each model (and alignments):
>> TIGR04159  methbact_MbnB: methanobactin biosynthesis cassette protein MbnB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.7   0.0   6.7e-06     0.027      15      64 ..       1      52 [.       1      72 [. 0.85

  Alignments for each domain:
  == domain 1    score: 12.7 bits;  conditional E-value: 6.7e-06
    TIGR04159 15 dnflhlpeeeiakkfdvpvafhimls..kflerdeeeleklasrlrrlidal 64
                 d f  +  +  ++++++  +f im s   +l  + +  ++ a+rlr+  d +
  MMETSP1061-20121228|45796_1  1 DVFAVVTATATSSSYEAATGFSIMESmvSYLRSEAALADEKAKRLRKQADEI 52
                 5688888999999***********9844589888888899******998876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       221  (0.0538762); expected 82.0 (0.02)
Passed bias filter:                      174  (0.0424183); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 443.96
//
Query:       MMETSP1061-20121228|45804_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.33
# Mc/sec: 215.98
//
Query:       MMETSP1061-20121228|45813_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 435.56
//
Query:       MMETSP1061-20121228|45811_1  [L=133]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (133 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 650.17
//
Query:       MMETSP1061-20121228|45829_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.28
# Mc/sec: 391.25
//
Query:       MMETSP1061-20121228|45842_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   15.8   0.0     0.0015   15.8   0.0    1.0  1  TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
     0.0059   13.6   0.0     0.0062   13.5   0.0    1.0  1  TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase


Domain annotation for each model (and alignments):
>> TIGR03301  PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.8   0.0   7.4e-07    0.0015     195     226 ..      19      50 ..       5      52 .. 0.92

  Alignments for each domain:
  == domain 1    score: 15.8 bits;  conditional E-value: 7.4e-07
    TIGR03301 195 lsFviarrdlleasagnarSlyldLydqwaym 226
                  ls  +arr ll++++g +rSl+ dL   w+++
  MMETSP1061-20121228|45842_1  19 LSLALARRILLARPRGGCRSLSADLFRRWECL 50 
                  7899*************************996 PP

>> TIGR02326  transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0     3e-06    0.0062     200     230 ..      20      50 ..       8      53 .. 0.91

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 3e-06
    TIGR02326 200 gfviakeaelekckgnarslsldlydqweam 230
                  ++ +a++  l++ +g +rsls dl+ +we++
  MMETSP1061-20121228|45842_1  20 SLALARRILLARPRGGCRSLSADLFRRWECL 50 
                  67799************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|45839_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 728.58
//
Query:       MMETSP1061-20121228|45832_1  [L=516]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.8e-44  147.8   0.8    1.1e-22   78.4   0.1    3.1  3  TIGR03868 F420-O_ABCperi: proposed F420-0 ABC transporter, periplasmic F420-0 binding protein


Domain annotation for each model (and alignments):
>> TIGR03868  F420-O_ABCperi: proposed F420-0 ABC transporter, periplasmic F420-0 binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.2   0.0   1.8e-16   7.2e-13       1      91 [.      26     114 ..      26     141 .. 0.83
   2 !   78.4   0.1   2.8e-26   1.1e-22      98     237 ..     157     314 ..     145     338 .. 0.80
   3 !   20.4   0.0   1.3e-08   5.4e-05     243     286 ..     355     398 ..     330     399 .. 0.84

  Alignments for each domain:
  == domain 1    score: 46.2 bits;  conditional E-value: 1.8e-16
    TIGR03868   1 pltvdncGtevtldaapervvtikssttelllalGlgdrivgtafadGpvpeewaedaaa..vavlservpseeavlelepdlvyaGwesnlt 91 
                  pl ++nc ++  +d aperv    s ++e++l+lGl+dr+v++a+      e w   + +    +  ++ ps +  ++ +pd++ya + s + 
  MMETSP1061-20121228|45832_1  26 PLGISNCHYQQWFDKAPERVAVASSGAIEIMLSLGLADRVVSSAWVK----EVWEPLEEDfqKFQHYDKYPSAQELMDSKPDMIYATYSSAFE 114
                  7899****************************************965....445444444113445689*******************99875 PP

  == domain 2    score: 78.4 bits;  conditional E-value: 2.8e-26
    TIGR03868  98 redlaklGvntyvapsackedgyqpdpltfddvlaeieevgtifdvpdaaeelvaeqeaalaaiep.deaG......ltalw...yssGs....dtpfvGaGiGapqlvldaaGltniaad..vdd..twtslsweavvdadpdvivlvdsawnsaek 237
                  r+++ + G+nty+a s c+ + y+p  ++ d +++ei ++++ifd+ d+a  lv+  e+++++  + ++aG      + ++w   + s s    + pfvGa  G pq+vl+ aG +n++ d  ++d   w  ++w+avv++dpd+ivl++   +sa +
  MMETSP1061-20121228|45832_1 157 RDEIHEAGINTYLASSYCEFSEYRPTSVSVDALYQEIWDIAMIFDAMDNARVLVDGIEDHFDEALAiSQAGtatndpIRVFWldiFRSKSnpeeERPFVGACCGGPQIVLNKAGAVNVFEDqgLEDrrIWDRVEWDAVVETDPDLIVLIELGTESAGS 314
                  89999*************************************************999988876433133331111115678855545543222268**********************99844455337********************987777754 PP

  == domain 3    score: 20.4 bits;  conditional E-value: 1.3e-08
    TIGR03868 243 esnpvtaaltavkekryvvvdfaateaGvrsvdaaasladqlae 286
                   ++pv  ++ av+e++++v++faa++ Gvr   aa ++a+++ +
  MMETSP1061-20121228|45832_1 355 LNDPVLREMRAVQERQFMVLPFAASNVGVRLGAAAYNMAEAMGA 398
                  4689999********************************99876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (516 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.35
# Mc/sec: 1945.90
//
Query:       MMETSP1061-20121228|45846_1  [L=165]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.7e-26   90.8   0.0    1.8e-26   90.7   0.0    1.0  1  TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00561  pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.7   0.0   4.5e-30   1.8e-26     312     461 ..       2     164 ..       1     165 [] 0.74

  Alignments for each domain:
  == domain 1    score: 90.7 bits;  conditional E-value: 4.5e-30
    TIGR00561 312 tdlpsrlatqssqlygtnlvnllkllc...kekdgnikvdvedvvirgvlvvregeitippakiqvsaqvkaakkaapvve...keek.....sakspsvkyallalaa.illvwlasva..pkeflshftvfvlacvvgyyvvwnvshalhtplmsvtnaisg 461
                  tdlpsrla+ +s+l+  n+ +++  ++    ++ g +++d+ed  ++ +lv+  g+  +p      + ++ + ++ + vve   ++ek     ++k++ vk +l+a aa  +lv+++ +a  p++ ++ ++ f la + gy+vvw v++alh+plm+vtnaisg
  MMETSP1061-20121228|45846_1   2 TDLPSRLASTASNLFANNIAKFILSIGpqtTKEKGVFQIDLEDDAVQNMLVSYGGNARWPDKITPFAPPPPPPQEVVEVVEltpEQEKaladqTSKDAFVKNSLIASAAaAVLVGFGLTAdsPTS-INLMATFGLAGLAGYQVVWGVAPALHSPLMAVTNAISG 164
                  9*******************99888763333456*************************975443333444555555555422233331111134677788888887641456666665521555.678899*******************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (165 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       158  (0.0385178); expected 82.0 (0.02)
Passed bias filter:                      131  (0.0319356); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.32
# Mc/sec: 680.57
//
Query:       MMETSP1061-20121228|45837_1  [L=411]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0091   14.2   0.1      0.018   13.3   0.1    1.4  1  TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase


Domain annotation for each model (and alignments):
>> TIGR00401  msrA: peptide-methionine (S)-S-oxide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.1   4.4e-06     0.018      75     147 ..     290     367 ..     283     371 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 4.4e-06
    TIGR00401  75 vidPttanrqgnDkGtqyrsgiyalsdedekaaeaskerlqe....sakykkkivt.eiekaenfyeaeeyhqqylkk 147
                  v d  +  +q  ++G++y    y ++++   ++ ++k+  +e    ++k  ++++  + +++++f e  eyhq  l+k
  MMETSP1061-20121228|45837_1 290 VQDACQCAEQLVETGKEYVGNAYHTTQKVASELLETKQSTKEgakeQSKLAEHLTClDSATMKDFEEFVEYHQALLEK 367
                  578889999*******************9999999999988833335555555554367889**************99 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (411 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       193  (0.0470502); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2086.44
//
Query:       MMETSP1061-20121228|45857_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-15   55.1   7.9    1.9e-15   54.5   5.5    1.3  1  TIGR00836 amt: ammonium transporter
    7.4e-14   49.1   7.2    8.4e-14   49.0   5.0    1.2  1  TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype


Domain annotation for each model (and alignments):
>> TIGR00836  amt: ammonium transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   5.5   9.3e-19   1.9e-15      79     163 ..      19     107 ..       1     108 [] 0.77

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 9.3e-19
    TIGR00836  79 nkvlk.esskeelpelvfflfqlvFaaiaaaivsgavaeRikfsayllfsvllltlvyppvahwvwg....tgGwlal..klgvlDFAGstv 163
                      + e ++++  elv f+f ++Faa+  aivsg++aeR+kf ++l+ s+l++++vyp ++ ++w+     + wl+    + ++DFAGs v
  MMETSP1061-20121228|45857_1  19 P---AaELASNNGYELVKFFFLMTFAAAIPAIVSGGIAERAKFWPFLIASSLIVAFVYPFFEGIIWNgnfgFQAWLEDsfGAPFHDFAGSVV 107
                  2...22456678899****************************************************76663344443446789******87 PP

>> TIGR03644  marine_trans_1: probable ammonium transporter, marine subtype
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   49.0   5.0   4.1e-17   8.4e-14     100     168 ..      31     107 ..       2     108 .] 0.83

  Alignments for each domain:
  == domain 1    score: 49.0 bits;  conditional E-value: 4.1e-17
    TIGR03644 100 asdfffqvvfvatamsivsGavaerlklwaflvfavvltaliyPvegswkwgg.....Gll.se..lgfsdfaGsgi 168
                     fff + f+a+  +ivsG +aer k+w+fl+ + ++ a++yP      w+g      +l ++  + f+dfaGs +
  MMETSP1061-20121228|45857_1  31 LVKFFFLMTFAAAIPAIVSGGIAERAKFWPFLIASSLIVAFVYPFFEGIIWNGnfgfqAWLeDSfgAPFHDFAGSVV 107
                  468*******************************************9999999885655665432256*******86 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 712.74
//
Query:       MMETSP1061-20121228|45874_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 359.97
//
Query:       MMETSP1061-20121228|45883_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 415.77
//
Query:       MMETSP1061-20121228|45887_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       27  (0.00658216); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|45899_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0057   14.8   0.1     0.0087   14.2   0.1    1.3  1  TIGR01557 myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class


Domain annotation for each model (and alignments):
>> TIGR01557  myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.2   0.1   2.1e-06    0.0087       5      26 ..      63      83 ..      60      86 .] 0.90

  Alignments for each domain:
  == domain 1    score: 14.2 bits;  conditional E-value: 2.1e-06
    TIGR01557  5 vWteelhrrFlqAvqklGgedk 26
                 +Wt+e+ + Fl + +k+G+ ++
  MMETSP1061-20121228|45899_1 63 PWTQEEKKAFLLGFEKYGK-NW 83
                 7******************.88 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 567.55
//
Query:       MMETSP1061-20121228|45901_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.23
# Mc/sec: 344.32
//
Query:       MMETSP1061-20121228|45892_1  [L=573]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (573 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.27
# Mc/sec: 2801.10
//
Query:       MMETSP1061-20121228|45924_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       135  (0.0329108); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 479.33
//
Query:       MMETSP1061-20121228|45938_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 578.24
//
Query:       MMETSP1061-20121228|45943_1  [L=344]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    6.7e-24   82.5   0.0    4.9e-22   76.4   0.0    2.1  1  TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain
    2.5e-18   63.9   0.1    4.5e-16   56.5   0.1    2.1  1  TIGR01508 rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase
    2.8e-15   54.2   0.0    1.9e-10   38.3   0.0    2.1  2  TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD


Domain annotation for each model (and alignments):
>> TIGR00227  ribD_Cterm: riboflavin-specific deaminase C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.4   0.0   3.6e-25   4.9e-22       5     173 ..      84     292 ..      83     309 .. 0.83

  Alignments for each domain:
  == domain 1    score: 76.4 bits;  conditional E-value: 3.6e-25
    TIGR00227   5 vilklaasLDgkiat.asgesswisseearrdvhklRaesdailvgsgTVlaDdPrLtvkkveldek.............rnPvrvvvdsrlrvpke.arllnkeaktlvvtseeadeek....................vkeledl...avevivleek.rvdlkklleiLkek.girsvlvEgGatlngsllkeglvdelivyiapk 173
                  ++lk+a    g +a+ +s++s++ ++ e + +vh+lR+ sda+lvg +TV  Dd +Ltv++v+l +              ++P rvv+d +l+++++ ++++++   t++v   + d e+                     k ++d+   +  +i++e k r+   ++ +iL+++ gi++++vEgG++ + ++lk ++vd  i+++ap+
  MMETSP1061-20121228|45943_1  84 ITLKIAFDSQGGVADlSSEKSERFTCGESLDMVHRLRRVSDAVLVGRSTVEVDDCTLTVRRVPLLPIvqensdgtgtkkqKQPFRVVLDPNLDLKLDrFKIFQDGLATIIVHAVTDDLETgqtsatsedegnnidfvkttSKDFPDVtflGLRPITDEGKaRLCTRQISDILAKEfGIHHIMVEGGPNTALQFLKDKTVDRAILVYAPI 292
                  57788888888888724567899***************************************9876677889**********************986379****9555555444444444446666677788988865554556665222467788877779*********************************************96 PP

>> TIGR01508  rib_reduct_arch: diaminohydroxyphosphoribosylaminopyrimidine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   56.5   0.1   3.3e-19   4.5e-16      13     169 ..      94     293 ..      84     297 .. 0.79

  Alignments for each domain:
  == domain 1    score: 56.5 bits;  conditional E-value: 3.3e-19
    TIGR01508  13 Gklatksre..srlsceeDlervdelraevDavmvGigtvlaDdPsLtvkka...............keernPvrvvvdsklrvpld.arilnkeaktlvavseaeseek................veelekkgvevvkfg........eervdLeklldalesk.gvrrllveGGGtLifslikenLvDeirvyiaPkl 169
                  G +a+ s e   r  c e l  v++lr  +Dav+vG +tv +Dd  Ltv++                k++++P rvv d +l + ld  +i+++   t+++ + +++ e                 v++  k    v+ +g        + r   +++ d+l +  g+++++veGG +   +++k++ vD   +++aP+ 
  MMETSP1061-20121228|45943_1  94 GGVADLSSEksERFTCGESLDMVHRLRRVSDAVLVGRSTVEVDDCTLTVRRVpllpivqensdgtgtKKQKQPFRVVLDPNLDLKLDrFKIFQDGLATIIVHAVTDDLETgqtsatsedegnnidfVKTTSKDFPDVTFLGlrpitdegKARLCTRQISDILAKEfGIHHIMVEGGPNTALQFLKDKTVDRAILVYAPIS 293
                  56666554445799*********************************************999999999999**************9846**********987766665555566666667788676555544444444332222112115556668899**975459************************999999975 PP

>> TIGR00326  eubact_ribD: riboflavin biosynthesis protein RibD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.3   0.0   1.4e-13   1.9e-10     144     245 ..      85     203 ..      80     221 .. 0.84
   2 !   13.8   0.0     4e-06    0.0055     258     304 ..     245     292 ..     217     312 .. 0.80

  Alignments for each domain:
  == domain 1    score: 38.3 bits;  conditional E-value: 1.4e-13
    TIGR00326 144 llKlalsldGkia.tasgeskwitseaaReyaqklRakidailvgseTvkaDnPaLtarldeake...............qPvrvvldrqlkideea.klikqvaktwlvttkadkkef 245
                  +lK+a   +G +a  +s++s+  t  ++ + +++lR+++da+lvg +Tv  D+ +Lt+r + +                 qP rvvld +l+++ +  k++++   t++v   +d  e 
  MMETSP1061-20121228|45943_1  85 TLKIAFDSQGGVAdLSSEKSERFTCGESLDMVHRLRRVSDAVLVGRSTVEVDDCTLTVRRVPLLPivqensdgtgtkkqkQPFRVVLDPNLDLKLDRfKIFQDGLATIIVHAVTDDLET 203
                  7899998888888458899****************************************988766777899*******************99997653788877777777777664443 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 4e-06
    TIGR00326 258 kltlkevlkqlakr.eiksvlvEgGenllkslldeglvdeliiylapk 304
                  +l ++++   lak+ +i+ ++vEgG+n + ++l+ ++vd+ i+  ap 
  MMETSP1061-20121228|45943_1 245 RLCTRQISDILAKEfGIHHIMVEGGPNTALQFLKDKTVDRAILVYAPI 292
                  4677888888887658***********************988877774 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (344 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 1816.17
//
Query:       MMETSP1061-20121228|45950_1  [L=379]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-23   80.8   0.0    3.4e-19   67.1   0.0    2.3  2  TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
     0.0012   16.6   0.0     0.0083   13.8   0.0    2.3  2  TIGR00185 rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2


Domain annotation for each model (and alignments):
>> TIGR00186  rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.1   0.0   1.7e-22   3.4e-19      45     206 ..     135     316 ..      80     323 .. 0.84
   2 !   11.6   0.0   1.5e-05      0.03     213     239 ..     343     369 ..     325     370 .. 0.90

  Alignments for each domain:
  == domain 1    score: 67.1 bits;  conditional E-value: 1.7e-22
    TIGR00186  45 vtielvdkkkldkltkngnHqgivaevkpeikeleledlvktakskkapllliLdeitDphNlGailRtAealgvdgvvlkkrrsapltstvvktssGalellplvrvtnlsetltklke...sgfwivgtsleaeetkyekkktk...................klaLvvGnEgkGvrklikk 206
                  + ++lv    +   t+    qgiva v+ + ++   ++   +a    ap+ l+Ld++ Dp NlG  lRt  a+gv+gvvl  + +   ++ +v++++Ga +++p+++ +   e+  +l++      +  +t +e ++ +  +++                       aLv+G+Eg+G++  i++
  MMETSP1061-20121228|45950_1 135 LLVQLVHPDIFSDCTDTMTPQGIVAIVDIPDEAFAANNAE-VASGPAAPMYLVLDGVSDPGNLGTLLRTSLAVGVAGVVLLPDCCDVWNPKAVRSAMGASFQIPILEYASWGEAKSQLRDskgVKKLYAATMIEPNDGDA-SGDSGsngnpkasipyfevnwtegASALVIGSEGNGLSPTIRQ 316
                  56778888888899999999*********86666666655.7777779*********************************************************99998777666665520055556666666666633.33333477999***************************99986 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 1.5e-05
    TIGR00186 213 kipmagkvdSLNvSVAtgillfeikrq 239
                  +ipm+  ++SLN+ V   ++lfe  rq
  MMETSP1061-20121228|45950_1 343 HIPMEAGIESLNAAVCGSVILFEYARQ 369
                  7**********************9987 PP

>> TIGR00185  rRNA_methyl_2: RNA methyltransferase, TrmH family, group 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0      0.66   1.4e+03      12      38 ..     193     219 ..     185     264 .. 0.57
   2 !   13.8   0.0     4e-06    0.0083     117     150 ..     339     372 ..     284     376 .. 0.85

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 0.66
    TIGR00185  12 PnntGnivrtCaatkaelhlikPlGfa 38 
                  P n G ++rt  a+++   ++ P    
  MMETSP1061-20121228|45950_1 193 PGNLGTLLRTSLAVGVAGVVLLPDCCD 219
                  777788888877777655554444333 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 4e-06
    TIGR00185 117 eqklriPlteevrslnlsnavavvlyealrqlky 150
                   +   iP+ + + sln + + +v+l+e++rq + 
  MMETSP1061-20121228|45950_1 339 VRATHIPMEAGIESLNAAVCGSVILFEYARQCRQ 372
                  45678**************************876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (379 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 1852.74
//
Query:       MMETSP1061-20121228|45978_1  [L=67]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (67 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 442.16
//
Query:       MMETSP1061-20121228|45983_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 415.77
//
Query:       MMETSP1061-20121228|45988_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|45993_1  [L=503]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (503 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.28
# Mc/sec: 2289.33
//
Query:       MMETSP1061-20121228|46011_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 379.47
//
Query:       MMETSP1061-20121228|46020_1  [L=795]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (795 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.37u 0.14s 00:00:00.51 Elapsed: 00:00:00.49
# Mc/sec: 2141.46
//
Query:       MMETSP1061-20121228|46035_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|46036_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.17
# Mc/sec: 481.37
//
Query:       MMETSP1061-20121228|46023_1  [L=854]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (854 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.36u 0.12s 00:00:00.48 Elapsed: 00:00:00.36
# Mc/sec: 3131.07
//
Query:       MMETSP1061-20121228|46058_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       17  (0.00414432); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.12s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|46046_1  [L=299]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (299 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.30
# Mc/sec: 1315.49
//
Query:       MMETSP1061-20121228|46075_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       100  (0.0243784); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.59
# Mc/sec: 116.33
//
Query:       MMETSP1061-20121228|46069_1  [L=508]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.1   0.0        0.1    9.2   0.0    1.7  2  TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family


Domain annotation for each model (and alignments):
>> TIGR03860  FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0     0.037   1.5e+02     321     375 ..     136     192 ..      99     211 .. 0.70
   2 ?    9.2   0.0   2.5e-05       0.1     207     236 ..     343     372 ..     338     377 .. 0.89

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 0.037
    TIGR03860 321 eeaeeksrlelvkelakeekltlrelaerla...agrghkvvvGtpeqvAdeleewfe 375
                   ++++ s+++ + + +k+e +t r  ++ +       +h+  +G  ++v ++++e ++
  MMETSP1061-20121228|46069_1 136 PRDKS-STASIADSESKHEGPTFRMYYNDVYevkLPPRHRFPMGKYRKVREQIQELIS 192
                  33333.6667777778888999998887654111556788999999999999999875 PP

  == domain 2    score: 9.2 bits;  conditional E-value: 2.5e-05
    TIGR03860 207 gtPvlvqAGsSerGrelAarhAeavFtaaq 236
                  g+ vl+q G+S++G++   +hA+ vFt + 
  MMETSP1061-20121228|46069_1 343 GNAVLFQKGNSTEGTAVHKKHADRVFTFSM 372
                  678***********************9765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (508 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.25
# Mc/sec: 2682.02
//
Query:       MMETSP1061-20121228|46086_1  [L=106]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (106 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 736.36
//
Query:       MMETSP1061-20121228|46123_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 389.97
//
Query:       MMETSP1061-20121228|46132_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.33
# Mc/sec: 271.98
//
Query:       MMETSP1061-20121228|46143_1  [L=402]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (402 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.26
# Mc/sec: 2040.75
//
Query:       MMETSP1061-20121228|46186_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.18
# Mc/sec: 403.30
//
Query:       MMETSP1061-20121228|46200_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 377.97
//
Query:       MMETSP1061-20121228|46214_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.31
# Mc/sec: 332.10
//
Query:       MMETSP1061-20121228|46209_1  [L=484]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (484 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.12s 00:00:00.35 Elapsed: 00:00:00.44
# Mc/sec: 1451.88
//
Query:       MMETSP1061-20121228|46217_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        17  (0.00414432); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.22
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|46240_1  [L=263]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   13.0   0.0       0.86    7.7   0.0    2.5  3  TIGR01997 sufA_proteo: FeS assembly scaffold SufA


Domain annotation for each model (and alignments):
>> TIGR01997  sufA_proteo: FeS assembly scaffold SufA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.5   0.0       0.3   1.2e+03      38      52 ..      78      92 ..      76      94 .. 0.86
   2 ?    2.8   0.0     0.007        29       2      46 ..     144     190 ..     143     207 .. 0.76
   3 ?    7.7   0.0   0.00021      0.86      38      86 ..     201     249 ..     198     255 .. 0.86

  Alignments for each domain:
  == domain 1    score: -2.5 bits;  conditional E-value: 0.3
    TIGR01997 38 leyalelvsepkedd 52
                 + y+ ++vs+++++d
  MMETSP1061-20121228|46240_1 78 FCYSTKSVSKADNND 92
                 6799999****9999 PP

  == domain 2    score: 2.8 bits;  conditional E-value: 0.007
    TIGR01997   2 vleltdaaatrvrelvkkreeavgirlsvkk..tGcaGleyalelvs 46 
                   ++lt+ a t  ++l+ +++   gi l  k+  tG   + ++   vs
  MMETSP1061-20121228|46240_1 144 AVKLTEQARTVFQKLLYDQPTRDGILLDYKQssTGQPRMVFSFRFVS 190
                  5799***********************99983345556666666665 PP

  == domain 3    score: 7.7 bits;  conditional E-value: 0.00021
    TIGR01997  38 leyalelvsepkeddvllekdGakvfvapeallflkGtevdfvkktlrq 86 
                  ++  ++   +pk+ ++ l++   k++++ +a+l ++G++vd  ++tl  
  MMETSP1061-20121228|46240_1 201 VSLEIDEDGNPKSPEDTLDDGFPKLYIHHNAFLKVLGATVDVDTETLTP 249
                  55667777899999999999999**********************9975 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (263 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.35
# Mc/sec: 991.80
//
Query:       MMETSP1061-20121228|46255_1  [L=179]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (179 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 1073.91
//
Query:       MMETSP1061-20121228|46263_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 316.77
//
Query:       MMETSP1061-20121228|46271_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 427.64
//
Query:       MMETSP1061-20121228|46284_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       203  (0.0494881); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 779.36
//
Query:       MMETSP1061-20121228|46288_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 502.82
//
Query:       MMETSP1061-20121228|46293_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 424.66
//
Query:       MMETSP1061-20121228|46350_1  [L=186]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (186 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.15s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 1022.92
//
Query:       MMETSP1061-20121228|46356_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|46347_1  [L=546]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0017   15.9   0.8     0.0063   14.1   0.6    2.0  1  TIGR01168 YSIRK_signal: gram-positive signal peptide, YSIRK family


Domain annotation for each model (and alignments):
>> TIGR01168  YSIRK_signal: gram-positive signal peptide, YSIRK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.6   1.5e-06    0.0063      14      35 ..     369     390 ..     369     392 .. 0.92

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 1.5e-06
    TIGR01168  14 IRKlsvGvaSVlvaslffggqa 35 
                  +RKl+v vaS+++++lf+++++
  MMETSP1061-20121228|46347_1 369 LRKLAVNVASIMAGMLFLSSTV 390
                  7*****************9954 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (546 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       171  (0.041687); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.33
# Mc/sec: 2183.82
//
Query:       MMETSP1061-20121228|46370_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.19
# Mc/sec: 458.49
//
Query:       MMETSP1061-20121228|46383_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 350.06
//
Query:       MMETSP1061-20121228|46388_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.06u 0.16s 00:00:00.22 Elapsed: 00:00:00.27
# Mc/sec: 146.65
//
Query:       MMETSP1061-20121228|46389_1  [L=38]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (38 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 227.98
//
Query:       MMETSP1061-20121228|46415_1  [L=596]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (596 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.37
# Mc/sec: 2126.09
//
Query:       MMETSP1061-20121228|46435_1  [L=160]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (160 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1111.49
//
Query:       MMETSP1061-20121228|46447_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-06   24.0   0.1    3.4e-06   24.0   0.0    1.1  1  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.0   8.3e-10   3.4e-06     104     143 ..      29      68 .]       2      68 .] 0.83

  Alignments for each domain:
  == domain 1    score: 24.0 bits;  conditional E-value: 8.3e-10
    TIGR00797 104 deevaelaqeYlrililgipavllslalqgvlrGagdtkt 143
                   ++v  +a +Yl ++ +++pavl  l++ g++rG+gd +t
  MMETSP1061-20121228|46447_1  29 GSPVFASAERYLFARCWAAPAVLAVLVAEGAFRGIGDGRT 68 
                  6899********************************9776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.50
# Mc/sec: 179.51
//
Query:       MMETSP1061-20121228|46451_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|46458_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.22
# Mc/sec: 575.95
//
Query:       MMETSP1061-20121228|46453_1  [L=578]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (578 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       114  (0.0277913); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 1816.42
//
Query:       MMETSP1061-20121228|46471_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.36
# Mc/sec: 355.64
//
Query:       MMETSP1061-20121228|46493_1  [L=286]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (286 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.10s 00:00:00.27 Elapsed: 00:00:00.50
# Mc/sec: 754.98
//
Query:       MMETSP1061-20121228|46500_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.10s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 833.93
//
Query:       MMETSP1061-20121228|46503_1  [L=158]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (158 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.12s 00:00:00.25 Elapsed: 00:00:00.33
# Mc/sec: 631.95
//
Query:       MMETSP1061-20121228|46507_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0015   15.3   0.1     0.0016   15.2   0.0    1.0  1  TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family


Domain annotation for each model (and alignments):
>> TIGR01845  outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   3.9e-07    0.0016     253     308 ..      18      73 ..       3      74 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 3.9e-07
    TIGR01845 253 dralaiarplesqqlptelplslpsdllrrRPDilaAerrleaanasIgvAkAaff 308
                  +++ + ++ +   ++ + l+ +lp+ ++  RPDi  A  ++ + +  I +A  ++f
  MMETSP1061-20121228|46507_1  18 TKTKSKTKTALLREPDPLLNEALPAPMVPIRPDIEGATEEIDEHHDRIEAAFRKYF 73 
                  445555666666777799******************************99977766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 490.25
//
Query:       MMETSP1061-20121228|46533_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 389.02
//
Query:       MMETSP1061-20121228|46536_1  [L=117]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (117 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       150  (0.0365675); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 735.37
//
Query:       MMETSP1061-20121228|46574_1  [L=1065]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-12   43.2  18.0    1.9e-06   23.9   1.0    4.2  3  TIGR02917 PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
    4.9e-10   37.2   5.1     0.0035   14.7   0.3    6.4  6  TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW


Domain annotation for each model (and alignments):
>> TIGR02917  PEP_TPR_lipo: putative PEP-CTERM system TPR-repeat lipoprotein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   3.1   1.4e-06    0.0029     445     663 ..     316     520 ..     313     546 .. 0.81
   2 !   23.9   1.0   9.1e-10   1.9e-06     554     708 ..     647     801 ..     629     810 .. 0.60
   3 !   12.3   0.1   2.9e-06     0.006     382     538 ..     885    1037 ..     870    1061 .. 0.61

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.4e-06
    TIGR02917 445 gefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkallaLaelaarkgneeeavallekaaekdpkelepalaLaqyylskgelkkalaileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLe 663
                  g++ ka+  +k+ +  +p     +   + i  + ++  kAr+  ++  +i p f+    + Arl+     ++ Ak  +   +++  +n+ + l+ ael+     +++++a+l ka e++p+ l++ ++ +       + ++a  +l  a++  p + el+++l+r+       ++a ++++k+ +  p + ++ + + +  ++++   +  + ++ka +
  MMETSP1061-20121228|46574_1 316 GDIHKARLLLKSVRDTNPKHGPGWIASARIEEAAGKTLKARKIIQEGCEICPKFVDVWLEAARLH----PLPVAKSILATGVRRVDNNVPLFLKAAELE---TLPAHKKAVLRKALEANPHSLQLWKQAIDLE---DSQDRAKLLLSVAVEKVPTAIELWLALARLE----TYEEAQKTLNKARKALPLEKAIWMAASKLEESQNHFSRVPKLVEKAFK 520
                  7899************************************************************8....589***************************...55666778899********999988766654...455566666666777889999***9999975....456777777777777777777777777777777666666666666655 PP

  == domain 2    score: 23.9 bits;  conditional E-value: 9.1e-10
    TIGR02917 554 allekaaekdpkelepalaLaqyylskgelkkal.aileeaadlapdspellellgraqlaakdlkkavesfkkllelqpdsalalllladvyavaknkakAltslkkaLelkpdnteaqlllaqLlleekrleeAlkllkelekqkpkaalgfel 708
                  a    a  + +++ + a++ ++   ++ +l+ al ++l+ a++  p+    ++l ++ q  a+ ++ a+  + k+ e +pds    l +a+  +   ++++A+  l++a e+ p   +  +  a L+ e++++ +Al l++e  +++pk a +  +
  MMETSP1061-20121228|46574_1 647 AASASAESSTKDADQEAKKSVSDGIKQHKLNEALdQVLQAASERLPRVEVFWLLRAKEQWLAGFVDTARDILAKAFEANPDSERVWLAAAKLEWETGETERARVLLERARERAPS-ERVFMKAALLEREAGDTRAALALIEEGIQKYPKTASKLYM 801
                  3333333334444444444455555666666666346666666666666666666666666666666666666666666666666666666666666666666666666666666.4445555566666666666666666666666666655544 PP

  == domain 3    score: 12.3 bits;  conditional E-value: 2.9e-06
    TIGR02917  382 AaeylakaseldPenaaaktklgiskLaqGdkseaiadLetAvkldpellraellLilsyLrsgefdkalaaakklekkqpdnaslynllgaiylgkkdlakAreafekALkiepdffpAlanLArldlqekniddAkqrfekvlaidpknlkalla 538 
                   A  +l+ a    P+n  + ++   ++  +G+++ a + +  A++   e  ++++lL+++   + ++++  ++a++ +k +p++++++   ++     +++ kAr+ fe A  ++pd     a+    + + +  ++  +  e+ ++++pk+ ++ + 
  MMETSP1061-20121228|46574_1  885 ARSLLELARLKHPKNDFLWLEATRLERRSGNSKLAESLMARALQ---ECPKSGRLLAENIATAPRVEQKSKSADA-IKRNPESPLVISVVASLFASDRKIVKARKWFERAVLLDPDLGDTWAKFYVFESNHGTKQQKEAVTERCIKAEPKHGELWQS 1037
                   44444444445555555544444444445555533333333332...4556666666666666666666666554.466788888888888888888888888888888888888766666666666666666666666667778888877776665 PP

>> TIGR02521  type_IV_pilW: type IV pilus biogenesis/stability protein PilW
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.0     0.032        66     147     193 ..     314     360 ..     291     369 .. 0.90
   2 ?   -0.4   0.2      0.07   1.4e+02      59     156 ..     456     479 ..     415     524 .. 0.59
   3 ?    1.7   0.0     0.017        35      41     174 ..     578     607 ..     563     626 .. 0.57
   4 !   14.7   0.3   1.7e-06    0.0035     148     219 ..     708     778 ..     659     802 .. 0.84
   5 !    3.2   0.1    0.0059        12     147     218 ..     878     949 ..     870     954 .. 0.76
   6 !   11.2   0.0   2.1e-05     0.044      54     101 ..     953    1000 ..     944    1026 .. 0.89

  Alignments for each domain:
  == domain 1    score: 0.8 bits;  conditional E-value: 0.032
    TIGR02521 147 kagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralle 193
                  ++gd +ka+  l+   + +pk  +   + a+++  +g+  +Ar++++
  MMETSP1061-20121228|46574_1 314 NLGDIHKARLLLKSVRDTNPKHGPGWIASARIEEAAGKTLKARKIIQ 360
                  57899999999999999999999999999999999999999999987 PP

  == domain 2    score: -0.4 bits;  conditional E-value: 0.07
    TIGR02521  59 eldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaek 156
                  e+ p   + +lalA +                                                                          +  e+a+k
  MMETSP1061-20121228|46574_1 456 EKVPTAIELWLALARL--------------------------------------------------------------------------ETYEEAQK 479
                  3333333333333322..........................................................................22222222 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.017
    TIGR02521  41 YleqgdlekAkenlekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdvlNNYGtFLcqqkkyeeAeqqfeaAiedpkYeqparsyeNaglcalkagdtekaekyltralkidpkrpeslle 174
                   l++g++++A++ l +Al++ p  +  +                                                                                                         +
  MMETSP1061-20121228|46574_1 578 VLARGNVATARAILAHALQQFPTRKGLW--------------------------------------------------------------------------------------------------------MQ 607
                  4555555555555555555555544433........................................................................................................33 PP

  == domain 4    score: 14.7 bits;  conditional E-value: 1.7e-06
    TIGR02521 148 agdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgda 219
                  ag ++ a+  l +a +++p++ +  l+ a+l+ ++g+  +Ar ller  ++++ +   ++ ++ +++ +gd 
  MMETSP1061-20121228|46574_1 708 AGFVDTARDILAKAFEANPDSERVWLAAAKLEWETGETERARVLLERARERAPSERVFMK-AALLEREAGDT 778
                  566789999*************************************99988876544333.44456666655 PP

  == domain 5    score: 3.2 bits;  conditional E-value: 0.0059
    TIGR02521 147 kagdtekaekyltralkidpkrpesllelaelklkkgqyaeAralleryqqtveqtaesLwLgiriakalgd 218
                  +++ ++ka++ l+ a  + pk+    le  +l+   g+ + A++l++r  q  +++ + L+  i +a + ++
  MMETSP1061-20121228|46574_1 878 SKQGVAKARSLLELARLKHPKNDFLWLEATRLERRSGNSKLAESLMARALQECPKSGRLLAENIATAPRVEQ 949
                  567788888888888888888888888888999999999999998888888888887777766666666655 PP

  == domain 6    score: 11.2 bits;  conditional E-value: 2.1e-05
    TIGR02521   54 lekAleldpkdadanlalAlyyqqlgelekAeesfrkAltlkpnngdv 101 
                     +A++ +p++  + ++ A ++ + ++  kA + f++A+ l+p+ gd 
  MMETSP1061-20121228|46574_1  953 SADAIKRNPESPLVISVVASLFASDRKIVKARKWFERAVLLDPDLGDT 1000
                   568****************************************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1065 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       234  (0.0570453); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.53u 0.13s 00:00:00.66 Elapsed: 00:00:00.45
# Mc/sec: 3123.74
//
Query:       MMETSP1061-20121228|46596_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 324.47
//
Query:       MMETSP1061-20121228|46591_1  [L=607]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (607 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       162  (0.0394929); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.30
# Mc/sec: 2670.58
//
Query:       MMETSP1061-20121228|46592_1  [L=898]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.019   12.4   0.0      0.033   11.6   0.0    1.3  1  TIGR02075 pyrH_bact: UMP kinase


Domain annotation for each model (and alignments):
>> TIGR02075  pyrH_bact: UMP kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   8.1e-06     0.033     143     202 ..     552     611 ..     542     615 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 8.1e-06
    TIGR02075 143 lraieieadvilkgkkgvdGvysaDPkknkdakkyekltydevlkkelkvmDltA.lalak 202
                  l  iei++d+ + ++  vd + ++ Pk++++a+++ +l  + v +k+++v+D  A ++la+
  MMETSP1061-20121228|46592_1 552 LSHIEIDSDLRITATL-VDTLEHHSPKTDSEANLLLSLCRNLVERKNIRVLDGCAsICLAR 611
                  6789************.***********************************876256665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (898 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.14s 00:00:00.54 Elapsed: 00:00:00.35
# Mc/sec: 3386.46
//
Query:       MMETSP1061-20121228|46611_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.23
# Mc/sec: 378.75
//
Query:       MMETSP1061-20121228|46612_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 319.82
//
Query:       MMETSP1061-20121228|46613_1  [L=107]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (107 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 470.76
//
Query:       MMETSP1061-20121228|46621_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 544.46
//
Query:       MMETSP1061-20121228|46627_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.9e-27   91.6   5.4    8.7e-27   91.5   3.8    1.0  1  TIGR01079 rplX_bact: ribosomal protein L24
    1.1e-06   26.9   0.7    1.1e-06   26.9   0.5    1.1  1  TIGR01080 rplX_A_E: ribosomal protein L24
    0.00081   17.3   2.2    0.00089   17.1   1.4    1.3  1  TIGR00405 L26e_arch: ribosomal protein L24


Domain annotation for each model (and alignments):
>> TIGR01079  rplX_bact: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.5   3.8   6.4e-30   8.7e-27       2      71 ..       3      72 .]       2      72 .] 0.98

  Alignments for each domain:
  == domain 1    score: 91.5 bits;  conditional E-value: 6.4e-30
    TIGR01079  2 akikkgDtVlvisGkdkGkkGkvlkvlpkkdkviVegvnlvkkhvkpkeekekeggiiekEapidisnva 71
                 +ki+++D+V+vi+GkdkGk++kvlkv+  +++viVeg+nl+kkh+kp ++ ++ ggiiekEa i++snva
  MMETSP1061-20121228|46627_1  3 SKIRRDDEVIVIAGKDKGKTAKVLKVIAGTERVIVEGINLIKKHTKPVPQLQQPGGIIEKEASINVSNVA 72
                 79**************************************************9***************97 PP

>> TIGR01080  rplX_A_E: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.5   7.9e-10   1.1e-06      41      88 ..       4      51 ..       1      68 [. 0.90

  Alignments for each domain:
  == domain 1    score: 26.9 bits;  conditional E-value: 7.9e-10
    TIGR01080 41 pvrkgdkvrilrGdfkGkeGkvlkvdlkryriyvegvtkekvdGteva 88
                 ++r++d+v ++ G+ kGk  kvlkv     r+ veg++  k   + v+
  MMETSP1061-20121228|46627_1  4 KIRRDDEVIVIAGKDKGKTAKVLKVIAGTERVIVEGINLIKKHTKPVP 51
                 79************************************9998877776 PP

>> TIGR00405  L26e_arch: ribosomal protein L24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.1   1.4   6.5e-07   0.00089      84     124 ..       2      42 ..       1      65 [. 0.85

  Alignments for each domain:
  == domain 1    score: 17.1 bits;  conditional E-value: 6.5e-07
    TIGR00405  84 iesikkGdvveiisGpfkGerakvirvdeakeevtlellea 124
                  +++i++ d v +i+G  kG+ akv +v    e v++e ++ 
  MMETSP1061-20121228|46627_1   2 ASKIRRDDEVIVIAGKDKGKTAKVLKVIAGTERVIVEGINL 42 
                  689*********************************98775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                      128  (0.0312043); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|46628_1  [L=124]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (124 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 818.33
//
Query:       MMETSP1061-20121228|46637_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00014   19.8   0.4    0.00025   19.1   0.1    1.6  2  TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase
     0.0093   13.9   0.2      0.015   13.2   0.1    1.4  1  TIGR03585 PseH: pseudaminic acid biosynthesis N-acetyl transferase
     0.0096   13.1   0.0      0.013   12.6   0.0    1.2  1  TIGR03448 mycothiol_MshD: mycothiol synthase
  ------ inclusion threshold ------
      0.014   11.7   0.1      0.026   10.9   0.0    1.4  1  TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103


Domain annotation for each model (and alignments):
>> TIGR01575  rimI: ribosomal-protein-alanine acetyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   2.4e-07   0.00025      99     126 ..       2      29 ..       1      37 [. 0.89
   2 ?   -1.7   0.0      0.61   6.3e+02      86      87 ..      56      57 ..      38      73 .. 0.54

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.4e-07
    TIGR01575  99 sNvaAqaLYkklgfkeialrknYYkdse 126
                  +N+aA+++Y+klgf++   + +YY   +
  MMETSP1061-20121228|46637_1   2 DNEAAIRFYEKLGFERLREIVDYYTIDD 29 
                  7***********************8665 PP

  == domain 2    score: -1.7 bits;  conditional E-value: 0.61
    TIGR01575 86 er 87
                 ++
  MMETSP1061-20121228|46637_1 56 QQ 57
                 11 PP

>> TIGR03585  PseH: pseudaminic acid biosynthesis N-acetyl transferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.1   1.5e-05     0.015     120     151 ..       2      33 ..       1      39 [. 0.77

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.5e-05
    TIGR03585 120 sNekalklyekfgfelegvlkqfiakegeevd 151
                  +Ne+a+++yek gfe+   + ++ + ++e+ +
  MMETSP1061-20121228|46637_1   2 DNEAAIRFYEKLGFERLREIVDYYTIDDEKHN 33 
                  7**************98877777776665554 PP

>> TIGR03448  mycothiol_MshD: mycothiol synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   1.3e-05     0.013     272     294 .]       2      24 ..       1      24 [. 0.88

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.3e-05
    TIGR03448 272 dneaAvrtYekLgFtvaevdvaY 294
                  dneaA+r YekLgF++    v Y
  MMETSP1061-20121228|46637_1   2 DNEAAIRFYEKLGFERLREIVDY 24 
                  9**************98776655 PP

>> TIGR03103  trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.0   2.5e-05     0.026     199     216 ..       2      19 ..       1      34 [. 0.88

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 2.5e-05
    TIGR03103 199 dneqaialyeklgfrrip 216
                  dne+ai++yeklgf+r++
  MMETSP1061-20121228|46637_1   2 DNEAAIRFYEKLGFERLR 19 
                  9**************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                      142  (0.0346173); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.24
# Mc/sec: 472.96
//
Query:       MMETSP1061-20121228|46638_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.007   13.9   6.3     0.0073   13.9   4.4    1.0  1  TIGR02977 phageshock_pspA: phage shock protein A
  ------ inclusion threshold ------
       0.02   12.9   6.4      0.022   12.8   4.5    1.0  1  TIGR02894 DNA_bind_RsfA: transcription factor, RsfA family
      0.034    9.6   6.5      0.033    9.6   4.5    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.15    7.5   8.6       0.15    7.5   5.9    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
       0.31    7.0   4.3       0.29    7.1   3.0    1.0  1  TIGR00344 alaS: alanine--tRNA ligase
       0.54    7.0   7.5       0.56    6.9   5.2    1.0  1  TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family
          1    5.6   6.7       0.97    5.7   4.7    1.0  1  TIGR03319 YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
        1.7    5.7   6.7        1.6    5.7   4.7    1.0  1  TIGR03752 conj_TIGR03752: integrating conjugative element protein, PFL_4705 family


Domain annotation for each model (and alignments):
>> TIGR02977  phageshock_pspA: phage shock protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   4.4   1.4e-05    0.0073      98     146 ..       7      55 ..       2      57 .] 0.88

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 1.4e-05
    TIGR02977  98 aekvealekelaaveealekleediekLeekleeararqkalvlRekaA 146
                   ++ e+l+++ +a++++l+ l+++ + L+e+l++a a+++++ +  ++A
  MMETSP1061-20121228|46638_1   7 CQENEQLQRDKTALKNTLQALTQEQHGLQEQLKDATAQKQSIEADLSQA 55 
                  567899***********************************98877666 PP

>> TIGR02894  DNA_bind_RsfA: transcription factor, RsfA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.8   4.5   4.2e-05     0.022      91     141 ..       2      52 ..       1      55 [. 0.90

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 4.2e-05
    TIGR02894  91 nlketleeaeklrkekeklkeeleslqkrneeLekeleklkkkksvieedy 141
                  +l+   +e+e+l+++k+ lk+ l++l ++++ L+++l+  + +k+ ie d 
  MMETSP1061-20121228|46638_1   2 QLQARCQENEQLQRDKTALKNTLQALTQEQHGLQEQLKDATAQKQSIEADL 52 
                  5667778999*********************************99999885 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.6   4.5   6.5e-05     0.033     229     277 ..       6      54 ..       1      57 [] 0.50

  Alignments for each domain:
  == domain 1    score: 9.6 bits;  conditional E-value: 6.5e-05
    TIGR02169 229 llkelealekqkekiekelaeleeelekleeeieelekeleeiekklee 277
                  + +e e+l+++k ++++ l++l++e+++l+e++++  ++ ++ie++l++
  MMETSP1061-20121228|46638_1   6 RCQENEQLQRDKTALKNTLQALTQEQHGLQEQLKDATAQKQSIEADLSQ 54 
                  4445555555555555555555555555555555555555555555554 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.5   5.9   0.00029      0.15     687     731 ..       9      53 ..       1      57 [] 0.23

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00029
    TIGR02168 687 eieeleekiaelekelkelekeleeleeeleklrkeleelerkls 731
                  e e+l+++ ++l+++l++l +e+  l+e+l+++ ++++++e +ls
  MMETSP1061-20121228|46638_1   9 ENEQLQRDKTALKNTLQALTQEQHGLQEQLKDATAQKQSIEADLS 53 
                  112222222222222222222222222222222222222222222 PP

>> TIGR00344  alaS: alanine--tRNA ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   3.0   0.00057      0.29     700     748 ..       6      54 ..       1      57 [] 0.88

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.00057
    TIGR00344 700 lkeeekkLkeladkLkkeleelakkveklkeelkalrkeleslkkkiak 748
                    +e+++L+  ++ Lk++l+ l+++ + l+e+lk+++ + +s+++ +++
  MMETSP1061-20121228|46638_1   6 RCQENEQLQRDKTALKNTLQALTQEQHGLQEQLKDATAQKQSIEADLSQ 54 
                  5578999********************************9999988765 PP

>> TIGR01843  type_I_hlyD: type I secretion membrane fusion protein, HlyD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.9   5.2    0.0011      0.56     129     174 ..       8      53 ..       2      57 .] 0.71

  Alignments for each domain:
  == domain 1    score: 6.9 bits;  conditional E-value: 0.0011
    TIGR01843 129 eqeslfesrksalraqlesleaqikqleaeleglqaqlqalrqqle 174
                  ++++++++ k+al+++l++l+++   l+++l++++aq q+++ +l 
  MMETSP1061-20121228|46638_1   8 QENEQLQRDKTALKNTLQALTQEQHGLQEQLKDATAQKQSIEADLS 53 
                  5667777777778888888888888888888877777777776664 PP

>> TIGR03319  YmdA_YtgF: conserved hypothetical protein YmdA/YtgF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.7    0.0019      0.97      86     133 ..       7      54 ..       1      57 [] 0.79

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0019
    TIGR03319  86 kqkeekldrkkeklekkeeelekkekeleekekeleekeeeleellke 133
                   q++e+l+r+k++l+++ ++l+++++ l+e+ k+ +++++++e  l++
  MMETSP1061-20121228|46638_1   7 CQENEQLQRDKTALKNTLQALTQEQHGLQEQLKDATAQKQSIEADLSQ 54 
                  367788999999999999999999999999999999999888877665 PP

>> TIGR03752  conj_TIGR03752: integrating conjugative element protein, PFL_4705 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.7   4.7    0.0031       1.6     110     153 ..       9      52 ..       1      57 [] 0.48

  Alignments for each domain:
  == domain 1    score: 5.7 bits;  conditional E-value: 0.0031
    TIGR03752 110 ekkelkkekeqlkeeqakleelldelqkkledvaaekesseedl 153
                  e+++l+++k++lk++ + l+++ + lq++l+d +a+k+s e+dl
  MMETSP1061-20121228|46638_1   9 ENEQLQRDKTALKNTLQALTQEQHGLQEQLKDATAQKQSIEADL 52 
                  34455555555555555555555555555555555555444444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       319  (0.0777669); expected 82.0 (0.02)
Passed bias filter:                      212  (0.0516821); expected 82.0 (0.02)
Passed Vit filter:                        34  (0.00828864); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.14u 0.17s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 327.10
//
Query:       MMETSP1061-20121228|46640_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 936.49
//
Query:       MMETSP1061-20121228|46662_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 579.29
//
Query:       MMETSP1061-20121228|46654_1  [L=1198]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1198 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.51u 0.14s 00:00:00.65 Elapsed: 00:00:00.41
# Mc/sec: 3856.66
//
Query:       MMETSP1061-20121228|46648_1  [L=259]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (259 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.24
# Mc/sec: 1424.38
//
Query:       MMETSP1061-20121228|46673_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        42  (0.0102389); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 329.97
//
Query:       MMETSP1061-20121228|46674_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 444.59
//
Query:       MMETSP1061-20121228|46676_1  [L=300]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     3e-137  454.5   7.1   3.5e-137  454.3   4.9    1.0  1  TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit
    2.6e-21   73.6   0.3    3.3e-21   73.3   0.2    1.1  1  TIGR02717 AcCoA-syn-alpha: acetyl coenzyme A synthetase (ADP forming), alpha domain


Domain annotation for each model (and alignments):
>> TIGR01019  sucCoAalpha: succinate-CoA ligase, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  454.3   4.9  1.7e-140  3.5e-137       2     283 ..       8     292 ..       7     295 .. 0.97

  Alignments for each domain:
  == domain 1    score: 454.3 bits;  conditional E-value: 1.7e-140
    TIGR01019   2 lldkdtkvivqGitGkqgsfhteqmleyGtkivgGvtpgkgGtevlglpvfdsvkeaveetganasvifvPapfakdaileaidaeielivvitegiPvkdtlkvaelle.eaktkliGPncPGiisPgeckiGimPaeilkkGkvGivsrsGtltyeavaqlteaglGqstcvGiGGdpvnGtsfidvleafeeddeteaivliGeiGGsaeeeaaefiken..vskPvvafiaGltaPkgkrmGhaGaiisggkGtaeskiealeaaGvkvvkslaeiaelva 283
                   +dk+tkvi+qG+tGkqg+fh++q++eyGt++vgGvtp+kgG+e+lglpvfd+v ea+e++  +asvi+vP+pf+++ai++ai+aei l+v iteg+P +d+++v+ +l+ +++t+liGPncPGii+PgeckiGimP++i+k+Gk+G+vsrsGtltyeav+q+t aglGqstcvGiGGdp nGt+fid+le+f +d++te i++iGeiGGsaeeeaae++ke    +kPvv+fiaG+taP+g+rmGhaGai+ ggkGta++k eale+aGv++++s+a++++++ 
  MMETSP1061-20121228|46676_1   8 WVDKNTKVICQGFTGKQGTFHSTQAIEYGTNMVGGVTPKKGGQEHLGLPVFDTVMEAKEAVKPDASVIYVPPPFCAQAIMDAIEAEIPLVVAITEGVPQQDMARVKYALRqQSATRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGVVSRSGTLTYEAVHQTTVAGLGQSTCVGIGGDPFNGTNFIDCLERFTNDPQTEGIIMIGEIGGSAEEEAAEWLKEYgdPNKPVVGFIAGTTAPPGRRMGHAGAIVAGGKGTAAAKFEALESAGVHISRSPAQLGATML 292
                  589******************************************************************************************************9876515699**********************************************************************************************************964479*****************************************************99875 PP

>> TIGR02717  AcCoA-syn-alpha: acetyl coenzyme A synthetase (ADP forming), alpha domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.2   1.6e-24   3.3e-21      41     271 ..      42     278 ..      21     290 .. 0.80

  Alignments for each domain:
  == domain 1    score: 73.3 bits;  conditional E-value: 1.6e-24
    TIGR02717  41 pvnpkae..eilgvkaYksvkeipeev..dlavivvpaklvlevveecgekgvkgvvvitaGFkEvGeeGaelekklveiakkygvrllGPNvlGiinteiklnatfaktapkkGeialisQSGalllalldwaekekvGlsklvslGnk..adidesdlleylaeDeetkvillYlE.gikdgkkFlktakeisk.kkPivvlksGksea.GakaaasHTGala....gsdevyeaalkqaGv 271
                  +v pk++  e lg++++++v e +e v  d  vi vp  ++ +++ ++ e+++  vv it G        a+++    ++ +++  rl+GPN+ Gii++       +  +  k+G+i+++s SG l+   +++++  ++G s+ v++G      +++ d le +++D++t+ i++  E g +  ++  + +ke    +kP+v + +G++   G+   + H Ga++    g+ ++  +al+ aGv
  MMETSP1061-20121228|46676_1  42 GVTPKKGgqEHLGLPVFDTVMEAKEAVkpDASVIYVPPPFCAQAIMDAIEAEIPLVVAITEGVPQQDM--ARVKY---ALRQQSATRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGVVSRSGTLTYEAVHQTTVAGLGQSTCVGIGGDpfNGTNFIDCLERFTNDPQTEGIIMIGEiGGSAEEEAAEWLKEYGDpNKPVVGFIAGTTAPpGR--RMGHAGAIVaggkGTAAAKFEALESAGV 278
                  566665444889***********9977669********************************887655..55554...44567889*************98899999999**************************************8733468999*************999987743344455666666664337*********9875144..5799999862222233333445666666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (300 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                      110  (0.0268162); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.16s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 1721.60
//
Query:       MMETSP1061-20121228|46697_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|46699_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 555.74
//
Query:       MMETSP1061-20121228|46700_1  [L=222]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (222 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 1172.06
//
Query:       MMETSP1061-20121228|46705_1  [L=750]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (750 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.12s 00:00:00.43 Elapsed: 00:00:00.36
# Mc/sec: 2749.77
//
Query:       MMETSP1061-20121228|46714_1  [L=48]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (48 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 316.77
//
Query:       MMETSP1061-20121228|46736_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   14.6   0.1      0.011   12.6   0.0    2.1  2  TIGR00465 ilvC: ketol-acid reductoisomerase


Domain annotation for each model (and alignments):
>> TIGR00465  ilvC: ketol-acid reductoisomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.6   0.0   2.6e-06     0.011      92     137 ..      35      80 ..       1      97 [. 0.82
   2 ?   -1.0   0.0     0.036   1.5e+02      95     117 ..      88     110 ..      82     111 .] 0.84

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 2.6e-06
    TIGR00465  92 fsHGfnivfkqivipkdvdvvlvAPKgpGalvReeykegrGvpsli 137
                   sHG+  ++++ +++++ +vvl+A K+ G+++ +  +e rG   ++
  MMETSP1061-20121228|46736_1  35 KSHGWVFQYASKQVRDNREVVLAAVKSHGEALCHASNESRGDMDVV 80 
                  59*****************************999999998865554 PP

  == domain 2    score: -1.0 bits;  conditional E-value: 0.036
    TIGR00465  95 GfnivfkqivipkdvdvvlvAPK 117
                  G  +++++++++++ dvv++A K
  MMETSP1061-20121228|46736_1  88 GLALQYASEKLKDEKDVVMAAVK 110
                  77888999999999999999977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       142  (0.0346173); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.14u 0.12s 00:00:00.26 Elapsed: 00:00:00.18
# Mc/sec: 813.93
//
Query:       MMETSP1061-20121228|46737_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 565.67
//
Query:       MMETSP1061-20121228|46748_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 413.18
//
Query:       MMETSP1061-20121228|46754_1  [L=621]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (621 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.36
# Mc/sec: 2276.81
//
Query:       MMETSP1061-20121228|46764_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 314.26
//
Query:       MMETSP1061-20121228|46791_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.047   10.8   1.5      0.053   10.6   1.0    1.0  1  TIGR00837 araaP: aromatic amino acid transport protein


Domain annotation for each model (and alignments):
>> TIGR00837  araaP: aromatic amino acid transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.6   1.0   1.3e-05     0.053       9      47 ..      31      69 ..      22      72 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.6 bits;  conditional E-value: 1.3e-05
    TIGR00837  9 tviGaGmlalPvstagawfivsllllillwllmllsgll 47
                   iG G+l+lP + ++ +   +ll+++++ l + +  ++
  MMETSP1061-20121228|46791_1 31 GYIGCGILSLPWALSQLGIPLGLLAILVMSLWSSYNCWT 69
                 47**********************999988887777665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        87  (0.0212092); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 356.86
//
Query:       MMETSP1061-20121228|46806_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.036   10.4   0.0      0.042   10.2   0.0    1.0  1  TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit


Domain annotation for each model (and alignments):
>> TIGR00133  gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0     1e-05     0.042     370     404 ..      15      49 ..       8      60 .. 0.83

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1e-05
    TIGR00133 370 allkpeelaeliklikegkisqksakelleellen 404
                  + ++ ++l e+++l+ eg is+++ak+ll+ l ++
  MMETSP1061-20121228|46806_1  15 SRVNGQQLGEIVALVLEGSISNTMAKQLLRVLYND 49 
                  5788899**********************988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        94  (0.0229157); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 673.84
//
Query:       MMETSP1061-20121228|46801_1  [L=699]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (699 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       181  (0.0441248); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.13s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 3548.48
//
Query:       MMETSP1061-20121228|46811_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 564.62
//
Query:       MMETSP1061-20121228|46836_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 569.95
//
Query:       MMETSP1061-20121228|46831_1  [L=652]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (652 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.13s 00:00:00.45 Elapsed: 00:00:00.26
# Mc/sec: 3309.88
//
Query:       MMETSP1061-20121228|46850_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 797.43
//
Query:       MMETSP1061-20121228|46844_1  [L=541]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.4e-12   43.0   0.1    3.4e-07   26.8   0.2    3.1  2  TIGR02350 prok_dnaK: chaperone protein DnaK
     0.0055   13.0   0.0        3.4    3.8   0.0    3.0  3  TIGR01991 HscA: Fe-S protein assembly chaperone HscA


Domain annotation for each model (and alignments):
>> TIGR02350  prok_dnaK: chaperone protein DnaK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.5   0.0   0.00012      0.24       3      52 ..     128     176 ..     126     184 .. 0.86
   2 !   26.8   0.2   1.6e-10   3.4e-07     181     337 ..     308     483 ..     302     524 .. 0.72

  Alignments for each domain:
  == domain 1    score: 7.5 bits;  conditional E-value: 0.00012
    TIGR02350   3 iGidLGttnsvvavleggepvvianaeGarttPsvvafkkdgerlvGela 52 
                  iG+dLGt    ++ ++ ++p++i+ a+G r     + ++ d e ++G+ a
  MMETSP1061-20121228|46844_1 128 IGVDLGTFYLKLSHMDKNKPQLIETAQGDRFRFNGILVQGD-EVVMGKSA 176
                  9****************************987777777766.77777766 PP

  == domain 2    score: 26.8 bits;  conditional E-value: 1.6e-10
    TIGR02350 181 kdekilvfdlGGGtfdvsilelgdgvfevkstaGdtkLGGddfdekiidylaeefkkeegidLskdkmalqrlkeaaekakieLssaleteinlpfitadasg.pkhlelkltrakfeelved.........lvert................kepvkkalkdaklsaseidevilvGGstri 337
                  + +  +v d+GG +  +s++  +d+v+   s  G   +GG+ + ++++d +++e+  ++   +++d m+l  ++ +a  + +eL ++++++i +pf+ +  +    hl+++++r  +e+ v+d         lve+                 +++v+k+l++++  +s+i++++l+GG +r 
  MMETSP1061-20121228|46844_1 308 STSSTMVIDVGGLASTISLVR-DDKVVASVSLDG---IGGESLVQQLVDRILSEIGDDS---MNNDPMSLTMIETSARSSVMELMNKTQSKIHIPFLFMGRKPdNPHLDTTISRVVLEQAVQDswgtliipnLVEENvlssslpipkdatslfTSAVTKVLEESNEIPSNIEQILLIGGGSRH 483
                  45667999****999999986.566655555555...9****************99885...799**********************************9987578************98775333322222444321111111111111111234566777777777777777777777765 PP

>> TIGR01991  HscA: Fe-S protein assembly chaperone HscA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    3.6   0.0    0.0019       3.9       2      54 ..     128     179 ..     127     187 .. 0.78
   2 !    3.8   0.0    0.0017       3.4     179     269 ..     307     394 ..     302     438 .. 0.76
   3 !    1.7   0.0    0.0073        15     297     332 ..     454     489 ..     444     496 .. 0.85

  Alignments for each domain:
  == domain 1    score: 3.6 bits;  conditional E-value: 0.0019
    TIGR01991   2 vGiDlGttnslvaavregkaevlkdeegrvl.lpsvvryleegkvevGkeakea 54 
                  +G+DlGt +  +++++++k+++++ ++g+   +  +    +  +v +Gk+a e+
  MMETSP1061-20121228|46844_1 128 IGVDLGTFYLKLSHMDKNKPQLIETAQGDRFrFNGILVQGD--EVVMGKSALEK 179
                  8************************9998764666554433..47777777665 PP

  == domain 2    score: 3.8 bits;  conditional E-value: 0.0017
    TIGR01991 179 aseglyavYDLGGGtFDvsiLklekGvFevlatgGdsaLGGDDfDralaklilkkagle.aelskeekkellkaaraakeaLtdaeevevev 269
                  +s    +v D+GG    +s+++ +k v    a+     +GG+ + + l+++il++ g +  + ++ + +++ ++ar+   +L ++++ ++++
  MMETSP1061-20121228|46844_1 307 NSTSSTMVIDVGGLASTISLVRDDKVV----ASVSLDGIGGESLVQQLVDRILSEIGDDsMNNDPMSLTMIETSARSSVMELMNKTQSKIHI 394
                  566778999****99999999988754....55555669****************9999566666777777788999999999999988886 PP

  == domain 3    score: 1.7 bits;  conditional E-value: 0.0073
    TIGR01991 297 leivrralrdaglkveeikevvlvGGstrvplvrqa 332
                  +++v+++l++++   ++i++++l+GG  r  + ++a
  MMETSP1061-20121228|46844_1 454 TSAVTKVLEESNEIPSNIEQILLIGGGSRHKVFEDA 489
                  568999******99**************99877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (541 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.31u 0.15s 00:00:00.46 Elapsed: 00:00:00.31
# Mc/sec: 2303.42
//
Query:       MMETSP1061-20121228|46854_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.17
# Mc/sec: 698.77
//
Query:       MMETSP1061-20121228|46852_1  [L=568]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (568 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2585.17
//
Query:       MMETSP1061-20121228|46865_1  [L=123]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (123 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       312  (0.0760605); expected 82.0 (0.02)
Passed bias filter:                      205  (0.0499756); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.22
# Mc/sec: 737.94
//
Query:       MMETSP1061-20121228|46868_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                      120  (0.029254); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1249.18
//
Query:       MMETSP1061-20121228|46889_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 1520.74
//
Query:       MMETSP1061-20121228|46895_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.022   11.3   0.0      0.024   11.1   0.0    1.1  1  TIGR00860 LIC: cation transporter family protein


Domain annotation for each model (and alignments):
>> TIGR00860  LIC: cation transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.0   5.9e-06     0.024     231     261 ..      23      53 ..       5      60 .. 0.74

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 5.9e-06
    TIGR00860 231 selklslvlrRrilYYllqlyiPsillvils 261
                  s+l  +   +R  +YY l+l+iP +llv   
  MMETSP1061-20121228|46895_1  23 SRLDRDTARKRIRSYYFLSLLIPIVLLVSFL 53 
                  5666666778999**********99987544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 499.26
//
Query:       MMETSP1061-20121228|46917_1  [L=102]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (102 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 611.95
//
Query:       MMETSP1061-20121228|46926_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 798.53
//
Query:       MMETSP1061-20121228|46930_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        36  (0.00877621); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|46960_1  [L=128]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (128 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 889.19
//
Query:       MMETSP1061-20121228|46954_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-28   98.4   0.0    3.8e-27   93.2   0.0    2.6  1  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family
    1.9e-11   41.5   0.0    3.6e-09   34.0   0.0    3.2  2  TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
    0.00045   17.9   0.0    0.00094   16.8   0.0    1.5  1  TIGR00093 TIGR00093: pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.2   0.0   2.8e-30   3.8e-27      70     273 ..     258     491 ..     241     509 .. 0.83

  Alignments for each domain:
  == domain 1    score: 93.2 bits;  conditional E-value: 2.8e-30
    TIGR00005  70 dkpldilfeDedilvidKPsglvvhptggyekntvlnallahlkeel............................vsrleivhRLDrdTSGllvvaktekaleeLkeqlkektvkkeYvalvkgefkskegtvdaplarvenkkglvavakssgkeavTvfkvler.........dekaslvelkllTGRtHQiRVHlq.ylghplagDplYgnksvkgksl..eaeaklkrqaLhaselgfth 273
                   ++ ++l e +d  v++KPsg+++   +  + + +     ++ +++                                l++vhRLDr+ SG l++ak+++ +++L  ++  +  +k+Yvalv+ + +          ++ + k  + + ++ +g++a + ++ l+r            a+l+e+++ TGR HQiRVH +  l+ p+  DplY+ +     ++  +  ++++r++Lhas+l+  +
  MMETSP1061-20121228|46954_1 258 GNEFKVLLETDDFAVVNKPSGVPCFHVKTTTAGKIKRGKGKKKGKKGpdkqqsessdvsledalvscnvqlstlnPDALGLVHRLDRGSSGCLILAKSNEMHTKLISEFFLRRTTKKYVALVQESSM----------SSFDDKDCNPIDHPVHGRPARSEYRLLKRfrssddedcVDGAALLEFEIFTGRKHQIRVHAAeVLQSPVWRDPLYSTNGDAIVKNgrKSGNSSERIFLHASHLAIPE 491
                  45689*******************9999999999999988888866688999****************999986557899******************************************99444..........344444444445555578888888888875555433334458******************86379***********98776555555888999*********98866 PP

>> TIGR01621  RluA-like: pseudouridine synthase Rlu family protein, TIGR01621
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.8   0.0     0.019        26       2      22 ..     261     281 ..     260     293 .. 0.84
   2 !   34.0   0.0   2.6e-12   3.6e-09      39     168 ..     331     462 ..     314     498 .. 0.77

  Alignments for each domain:
  == domain 1    score: 1.8 bits;  conditional E-value: 0.019
    TIGR01621   2 leilfrhsdfvlinksegisv 22 
                  +++l + +df ++nk++g+  
  MMETSP1061-20121228|46954_1 261 FKVLLETDDFAVVNKPSGVPC 281
                  78999************9965 PP

  == domain 2    score: 34.0 bits;  conditional E-value: 2.6e-12
    TIGR01621  39 lgvekvylvhrldkvtsGilllalnaesaselsrlfaekkikktylalsdkkpkkkqGliiGdmeksregawklvrskenpaitrfesv...siaeklrlfilkphtGkthqlrv.alkslGsailGdslygka 168
                  l+ + + lvhrld+ +sG l+la+ +e  ++l  +f  ++  k y+al ++       +   d +   + +       e   + rf s     + ++  l+  +  tG+ hq+rv a   l s++  d+ly++ 
  MMETSP1061-20121228|46954_1 331 LNPDALGLVHRLDRGSSGCLILAKSNEMHTKLISEFFLRRTTKKYVALVQESSM--SSFDDKDCNPIDHPVHGRPARSEYRLLKRFRSSddeDCVDGAALLEFEIFTGRKHQIRVhAAEVLQSPVWRDPLYSTN 462
                  6677889*****************************************877543..3444455555555555556677888899999872225778999999************9678899**********873 PP

>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.9e-07   0.00094      33     129 ..     338     446 ..     311     454 .. 0.75

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.9e-07
    TIGR00093  33 avGRLDrdseGlllltddgelqhrlthpek..evektYlvqvegs....vtdedlealrkGvkledektkpaklklikepel......ktklrvtlteGrnrqvrRlta 129
                   v RLDr s+G l+l+++ e+  +l++  +  ++ k+Y++ v++s     +d+d +++ + v+ + +  +   lk   + ++         l+  +  Gr +q+r  +a
  MMETSP1061-20121228|46954_1 338 LVHRLDRGSSGCLILAKSNEMHTKLISEFFlrRTTKKYVALVQESsmssFDDKDCNPIDHPVHGRPARSEYRLLKRFRSSDDedcvdgAALLEFEIFTGRKHQIRVHAA 446
                  577***********************986433899******99752222577788888877776666666666665555555666775568888899999999986555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                      107  (0.0260848); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.28u 0.16s 00:00:00.44 Elapsed: 00:00:00.27
# Mc/sec: 2532.24
//
Query:       MMETSP1061-20121228|46969_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|46962_1  [L=121]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (121 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 887.26
//
Query:       MMETSP1061-20121228|46975_1  [L=138]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (138 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.23
# Mc/sec: 791.93
//
Query:       MMETSP1061-20121228|46983_1  [L=271]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (271 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1625.87
//
Query:       MMETSP1061-20121228|47011_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       32  (0.00780107); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|47012_1  [L=169]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (169 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.19
# Mc/sec: 1174.01
//
Query:       MMETSP1061-20121228|47016_1  [L=1343]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1343 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       182  (0.0443686); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.57u 0.14s 00:00:00.71 Elapsed: 00:00:00.40
# Mc/sec: 4431.53
//
Query:       MMETSP1061-20121228|47036_1  [L=1462]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-71  239.7   3.6    1.9e-68  229.3   0.0    2.2  2  TIGR00955 3a01204: pigment precursor permease
      7e-62  207.3   2.3    2.5e-61  205.5   0.1    2.5  2  TIGR00956 3a01205: pleiotropic drug resistance family protein
    3.7e-28   96.6   0.0    7.8e-28   95.5   0.0    1.4  1  TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit
    2.1e-25   87.5   0.1    3.9e-25   86.6   0.1    1.4  1  TIGR01188 drrA: daunorubicin resistance ABC transporter, ATP-binding protein
    4.4e-24   83.1   0.0    7.4e-24   82.3   0.0    1.2  1  TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
    9.8e-24   82.0   0.0    1.6e-23   81.4   0.0    1.2  1  TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein
    8.5e-22   75.6   0.0    1.6e-21   74.7   0.0    1.4  1  TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
    1.1e-21   75.2   0.0    2.1e-21   74.4   0.0    1.3  1  TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein
    1.5e-21   74.7   0.0    3.8e-21   73.3   0.0    1.7  1  TIGR03608 L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
    1.8e-21   74.7   0.0    3.3e-21   73.8   0.0    1.3  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
    1.8e-21   73.9   0.9    2.4e-21   73.5   0.0    1.5  2  TIGR03375 type_I_sec_LssB: type I secretion system ATPase
    3.9e-21   73.5   0.0    6.7e-21   72.7   0.0    1.3  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
    1.4e-20   71.8   0.1      3e-20   70.7   0.1    1.4  1  TIGR00960 3a0501s02: type II secretory pathway family protein
    1.9e-20   71.2   0.0    4.1e-20   70.1   0.0    1.5  1  TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein
    2.2e-20   70.8   0.0    3.9e-20   70.0   0.0    1.2  1  TIGR03873 F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
    6.8e-20   69.0   0.0    1.2e-19   68.2   0.0    1.3  1  TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit
    1.6e-19   68.1   0.0    2.9e-19   67.3   0.0    1.3  1  TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
    1.7e-19   67.9   0.1    3.7e-19   66.8   0.1    1.5  1  TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein
    2.9e-19   67.3   0.0    5.9e-19   66.3   0.0    1.5  1  TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
    5.5e-18   63.0   0.0    9.8e-18   62.2   0.0    1.3  1  TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein
    1.1e-17   62.3   0.0    1.8e-17   61.5   0.0    1.3  1  TIGR01184 ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
    1.3e-17   61.5   0.0    2.2e-17   60.8   0.0    1.2  1  TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein
    1.6e-17   61.4   0.0    2.6e-17   60.7   0.0    1.3  1  TIGR01187 potA: polyamine ABC transporter, ATP-binding protein
    1.9e-17   61.5   0.0    3.7e-17   60.5   0.0    1.4  1  TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA
    2.3e-17   61.3   0.0    4.7e-17   60.3   0.0    1.4  1  TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
    2.7e-17   60.8   0.5      1e-16   59.0   0.3    1.9  1  TIGR01978 sufC: FeS assembly ATPase SufC
    7.8e-17   59.5   0.0    1.7e-16   58.4   0.0    1.5  1  TIGR03740 galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
    1.2e-16   58.6   0.0    1.8e-16   58.0   0.0    1.2  1  TIGR03258 PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
    2.1e-16   57.4   1.1    2.5e-16   57.2   0.0    1.6  1  TIGR01842 type_I_sec_PrtD: type I secretion system ATPase
    1.1e-15   54.7   0.0    1.9e-15   54.0   0.0    1.2  1  TIGR03796 NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
    1.4e-15   54.9   0.1    2.3e-15   54.2   0.0    1.2  1  TIGR01288 nodI: nodulation ABC transporter NodI
    1.8e-15   54.1   0.0    3.3e-15   53.2   0.0    1.3  1  TIGR00958 3a01208: antigen peptide transporter 2
    3.5e-15   53.4   0.0    6.3e-15   52.5   0.0    1.3  1  TIGR01193 bacteriocin_ABC: ABC-type bacteriocin transporter
    3.7e-15   53.8   1.2    6.5e-14   49.7   0.5    2.7  2  TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
    5.4e-15   52.6   0.1    8.9e-15   51.9   0.1    1.2  1  TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein
    5.6e-15   52.7   0.0    5.1e-11   39.6   0.0    2.3  2  TIGR03269 met_CoM_red_A2: methyl coenzyme M reductase system, component A2
    6.4e-15   52.4   0.0    1.1e-14   51.7   0.0    1.2  1  TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
    8.8e-15   52.8   0.0    1.6e-14   52.0   0.0    1.3  1  TIGR03771 anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
    9.5e-15   52.6   0.0    1.8e-14   51.7   0.0    1.4  1  TIGR03522 GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
    3.6e-14   48.4   0.0    5.8e-14   47.7   0.0    1.2  1  TIGR01257 rim_protein: rim ABC transporter
    7.2e-13   45.5   0.0    1.2e-12   44.8   0.0    1.2  1  TIGR01846 type_I_sec_HlyB: type I secretion system ATPase
      1e-12   45.8   0.2    5.1e-12   43.5   0.1    1.9  1  TIGR02770 nickel_nikD: nickel import ATP-binding protein NikD
    1.3e-12   45.6   0.0    2.6e-12   44.6   0.0    1.4  1  TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein
    9.9e-12   42.0   0.0    1.8e-11   41.2   0.0    1.3  1  TIGR01192 chvA: glucan exporter ATP-binding protein
    2.5e-11   40.6   0.1    5.7e-11   39.4   0.1    1.5  1  TIGR03797 NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
    3.5e-11   40.5   0.1    5.7e-11   39.8   0.0    1.2  1  TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein
    4.2e-11   40.7   0.7    4.1e-10   37.4   0.5    2.1  1  TIGR02769 nickel_nikE: nickel import ATP-binding protein NikE
    4.2e-11   39.9   0.0    1.1e-09   35.3   0.0    2.1  2  TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
    5.8e-10   36.6   0.0    1.1e-09   35.8   0.0    1.3  1  TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit
    8.5e-10   36.1   0.1    3.9e-09   33.9   0.1    1.9  1  TIGR03005 ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
    1.9e-08   31.9   0.2    1.4e-05   22.6   0.0    2.2  2  TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
    1.2e-07   28.9   0.0    5.8e-07   26.6   0.0    2.0  2  TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
    1.4e-06   24.7   0.2    0.00014   18.0   0.0    2.2  2  TIGR00630 uvra: excinuclease ABC subunit A
    1.6e-05   20.3   0.0    2.2e-05   19.9   0.0    1.1  1  TIGR00957 MRP_assoc_pro: multi drug resistance-associated protein (MRP)
    0.00029   17.2   0.0    0.00059   16.2   0.0    1.4  1  TIGR00954 3a01203: peroxysomal long chain fatty acyl transporter
     0.0014   13.9   0.0     0.0021   13.4   0.0    1.1  1  TIGR01271 CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
     0.0021   15.4   0.0     0.0042   14.5   0.0    1.4  1  TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A
     0.0059   14.0   0.0      0.011   13.0   0.0    1.4  1  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
  ------ inclusion threshold ------
      0.017   12.2   0.3      0.028   11.4   0.2    1.2  1  TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase
      0.023   11.0   0.0      0.047   10.0   0.0    1.4  1  TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter
      0.083    8.6   0.4       0.13    7.9   0.3    1.2  1  TIGR00618 sbcc: exonuclease SbcC


Domain annotation for each model (and alignments):
>> TIGR00955  3a01204: pigment precursor permease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.3   0.0   2.9e-70   1.9e-68      35     346 ..     721    1033 ..     694    1046 .. 0.85
   2 !    9.1   1.6    0.0014     0.093     411     576 ..    1193    1360 ..    1187    1401 .. 0.70

  Alignments for each domain:
  == domain 1    score: 229.3 bits;  conditional E-value: 2.9e-70
    TIGR00955   35 kpekellknvsGvaksGellAvlGsSGaGKtTLlnalafrsekglkvsgdvllnGekveakemraisayvqqddlfiptltvrehLmfsahlrlkrrltkkekrerveevleelgLrkcadtrigvpgrvkglSgGerkRlalaselltdPilLfcDEPTsGLDsfsaasvvkvLkklaqk.gktviltiHQPsselfelfdkiilla.eGrvvylGspeeavkffselglpcPenynpadFvlkvlavepgseee...sretiekicdaeaksklsreveentnlasgkekklvkdseneekikykasfltqflvl 346 
                   +++ ++++ v+G ++  ++ A++G+SGaGKt Llnal  r + g ++ g+v +nG+k++ +      ++v qdd+    ltvre+++f  ++rl+r ++  e  e  +e + +lgL+  a+  +g+  r +g+SgGe+kR+ ++ el+ +P++Lf+DEPTsGLD+ sa  v+k L++l +k g tv+ +iHQP   +f+lfd +ill   G+++y+G +e a ++f +l ++ P+ +  ad+++++ +   + ++    + +  +  +  + + ++++ ++++t ++s+k+k+  +d++n++++   ++ +t+ +++
  MMETSP1061-20121228|47036_1  721 RQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHYGETT-GTVYINGHKADIESHMDCIGFVPQDDIVYAELTVRENFIFAGKFRLPRGTSDAEISEYADETIANLGLSRVANSPVGDVKR-RGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKnGVTVVSVIHQPRKFIFDLFDSLILLGvGGQMMYHGPTEGAEPYFGRLNYKLPKGESVADWLIDISSGRLEPKNPvalK-KDRTMNVLIDDTIEIQTTSKKKTMKESKKKKHSSTDKQNSSSSG-GSGVITDDHCV 1033
                   4667899*************************************998.88***********************************************9999************************7775.************************************************975499***********************7368**********************************999887777763332.22222223333344555555555556666666666766666655.56666655555 PP

  == domain 2    score: 9.1 bits;  conditional E-value: 0.0014
    TIGR00955  411 vinvftaelpvflREtasglYrlsaYylaktlaelPlliilpllflsivYwmiglksgalkfltalllvvlvanvatsfglllscafestslalsvappvvipfllfgGfflnvdsvPvy....fk..wlsylSwfrYanEallinqwsdvkeielleantteecpssgeei 576 
                   ++n++t+++  f RE+ sg Y ++aY+ a ++ +      ++l+  +  + ++ ++  + + +  ++  +l+++v+++ ++l+  +++ +++ l  +  ++   l+f+G f  +     y    fk  +  ++S  r+ +Eal++ ++    e + ++ + t e  +s++++
  MMETSP1061-20121228|47036_1 1193 ATNTLTSKRLEFFREAGSG-YDTNAYFFAINILSTIEHSSQALI--AALF-ATWIRHPVASSASYYVHFLLLSWVTVGWSMLFPMICSPDKVPLIAGFFFAFCGLVFSGAFDPFSYKELYdsggFKeiLAGWISPTRFFFEALTVGEYRCLPEQSGFTIERTSENRNSNNTM 1360
                   6788888888999*99876.9******99766543332222222..2222.2223333333444444556789*************************************97665444442233333366799999999999999999887777755555554555554444 PP

>> TIGR00956  3a01205: pleiotropic drug resistance family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.5   0.1   3.7e-63   2.5e-61     740     988 ..     688     937 ..     680    1021 .. 0.88
   2 ?   -0.0   0.2      0.39        26     531     614 ..    1252    1338 ..    1239    1377 .. 0.69

  Alignments for each domain:
  == domain 1    score: 205.5 bits;  conditional E-value: 3.7e-63
    TIGR00956 740 deseevneeveeekesgeeifewrdltyevkikkekrvlLdevdGwvkPGkltALmGasGAGkttLlnvLaeRvttGvitegdrlvngrkld.ssFqRsiGYvqqqDlHletstvreaLrfsAylRqpkevskkekneyveevikllelesyadAvvGvpGe.GLnveqRkrltigveLvAkPklllFlDePtsGLDsqtawsivkllrklad.aGqailCtiHqPsailleeFDrLLllqkGGktvYfGdl 988
                  +e+e++n++ +e ++s      ++dl+  v+i  +k ++++ v+G ++  ++tALmG sGAGkt Lln+L +R   G  t g++ +ng+k d +s    iG+v q+D+  ++ tvre  +f+  +R p+  s++e  ey +e i  l+l + a+  vG +   G++   +kr+ ig eL+AkP ++lFlDePtsGLD+ +a  ++k l +l++ +G +++  iHqP   +++ FD L+ll  GG+ +Y G+ 
  MMETSP1061-20121228|47036_1 688 SEEEDINDDCTELMDSPGVDLCFKDLCLSVNIGRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHYGETT-GTVYINGHKADiESHMDCIGFVPQDDIVYAELTVRENFIFAGKFRLPRGTSDAEISEYADETIANLGLSRVANSPVGDVKRrGVSGGEKKRVNIGLELMAKP-SILFLDEPTSGLDASSALLVMKSLNNLVEkNGVTVVSVIHQPRKFIFDLFDSLILLGVGGQMMYHGPT 937
                  56666777776666644344678*******************************************************99.*********9977999*************************************************************88767********************.9*************************99637***********************************85 PP

  == domain 2    score: -0.0 bits;  conditional E-value: 0.39
    TIGR00956  531 rFffylLilflatlvmshlFrsigavtkt.lseAmtlaallllalslytgfviprkeilkWskWia..yvnPlayafesllvnefha 614 
                   ++++++L+l + t   s lF +i +  k  l+     a   l+    +  f  ++ +  + +k i   +++P ++ fe+l+v e++ 
  MMETSP1061-20121228|47036_1 1252 SYYVHFLLLSWVTVGWSMLFPMICSPDKVpLIAGFFFAFCGLVFSGAFDPFSYKELYDSGGFKEILagWISPTRFFFEALTVGEYRC 1338
                   66777777777777777777777776654133334444444444456666777776666777765333***************9875 PP

>> TIGR02857  CydD: thiol reductant ABC exporter, CydD subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   95.5   0.0   1.2e-29   7.8e-28     303     518 ..     689     912 ..     679     924 .. 0.81

  Alignments for each domain:
  == domain 1    score: 95.5 bits;  conditional E-value: 1.2e-29
    TIGR02857 303 aeeqpeaekapltaaassslelenvsvay.egrk..palkevsltvepgelvalvGaSGaGKstllklllgfve..pteGailvngaelaeldadswrkqiawvpQkPllfeg.tvaenirlarkdaseaevkealeragldelvkal..pqgleteiGe.rgagLSgGqrqRlaLArallrdapllllDEPtahLDaeteaevlealrela..egrtvllvaHrla 518
                  +ee +  + ++l + +   l ++++ ++   gr+  ++++ v  +++ ++++al+G SGaGK++ll++l g ++   t G++ +ng+   ++d +s  + i++vpQ  +++++ tv+en  +a k       ++a     +de +++l   +  ++++G+ + +g+SgG+++R+ +   l+ + ++l lDEPt+ LDa+++  v+++l++l+  +g tv+ v H++ 
  MMETSP1061-20121228|47036_1 689 EEEDINDDCTELMDSPGVDLCFKDLCLSVnIGRQkvKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGH---KADIESHMDCIGFVPQDDIVYAElTVRENFIFAGKFRLPRGTSDAEISEYADETIANLglSRVANSPVGDvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVekNGVTVVSVIHQPR 912
                  455566666666777777888888877765566657899********************************986225789******9...66667789**********998755******999876666666666666666666665411456899**9945689**********************************************9666788888889865 PP

>> TIGR01188  drrA: daunorubicin resistance ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   86.6   0.1   5.7e-27   3.9e-25       5     182 ..     723     909 ..     721    1020 .. 0.83

  Alignments for each domain:
  == domain 1    score: 86.6 bits;  conditional E-value: 5.7e-27
    TIGR01188   5 efkAvdgvnlkveegevfglLGPnGAGKtttikmLttllk..PdsGtarvaGyDvvrepdevRrsigvvpqkasvdedLtarenlellgel...yglpkkeaeeraeellelvelkeaadkkvkt.....ysgGmrrrlelaasliaqPevlfLDEPtiGLDprtrraiwdlieelkke.gvtilltth 182
                  ++k v+ v+ +++  ++ +l+G  GAGKt +++ L++  +   + Gt+ ++G+    + ++    ig vpq+  v+ +Lt ren+ + g++    g + +e+ e a+e +  + l   a+ +v+       sgG ++r++++  l+a+P++lfLDEPt+GLD+ ++  + + +++l+++ gvt++   h
  MMETSP1061-20121228|47036_1 723 KVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKA--DIESHMDCIGFVPQDDIVYAELTVRENFIFAGKFrlpRGTSDAEISEYADETIANLGLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKnGVTVVSVIH 909
                  67899999****************************9766226889999999964..55566789************************9944459999*********************99964222238********************************************99988999987666 PP

>> TIGR03864  PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.0   1.1e-25   7.4e-24      13     192 ..     723     910 ..     714     939 .. 0.83

  Alignments for each domain:
  == domain 1    score: 82.3 bits;  conditional E-value: 1.1e-25
    TIGR03864  13 krralddvsltvakgefvaLLGpnGaGkstLfslltrL..yeakegeikvaGldlrrapkealarlGvvfqqstlDldlsveqnlryhaaL...hGlsraeaeerieealarlglaeraeekv.....reLnGGhrrrveiarallhePklLLlDeatvGLDiesraalveevrelvreeglsvLWathl 192
                  k +++++v+ +++  +++aL+G  GaGk+ L++ l +   y +++g++ ++G++ +   ++ +  +G v q+  +  +l+v++n+ +  +    +G s ae +e  +e++a+lgl+  a++ v     r ++GG+++rv+i   l+ +P++L lDe+t GLD++s   +++++++lv+++g++v+   h 
  MMETSP1061-20121228|47036_1 723 KVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRahYGETTGTVYINGHKADI--ESHMDCIGFVPQDDIVYAELTVRENFIFAGKFrlpRGTSDAEISEYADETIANLGLSRVANSPVgdvkrRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQ 910
                  55789999999*999*****************9998752266789999999997665..5679**********************997776333588888999999999******9998776533333779*****************************************************988886 PP

>> TIGR02142  modC_ABC: molybdate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.4   0.0   2.3e-25   1.6e-23       4     208 ..     718     928 ..     715     940 .. 0.81

  Alignments for each domain:
  == domain 1    score: 81.4 bits;  conditional E-value: 2.3e-25
    TIGR02142   4 rlekrlgdfeLdvdlelpgkgvtalFGrsGsGktslirliaGLtrpdegeivldgevlqdsrkkiilppekRrvgyvFqeArLFpHlsvrenLrYGlkrara...eerris..eekvielLgiehLleRlpgk.....LsGGekqRvaigRAlLssPeLLlmDePLaaLDekrkkeilPyLerlsaelkiPilyvsHslde.varladrvvvledG 208
                  ++ ++  +   +v  ++ gk +tal G sG+Gktsl++++ G  r++ ge    g+v+ +++k  ++  +   +g+v q+  +++ l+vren  +  k   +   ++ +is   ++ i+ Lg++ + +  +g+     +sGGek+Rv ig  l+++P +L +DeP + LD ++   ++  L++l ++  + ++ v H+    +  l d +++l  G
  MMETSP1061-20121228|47036_1 718 NIGRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCG--RAHYGET--TGTVYINGHK-ADIESHMDCIGFVPQDDIVYAELTVRENFIFAGKFRLPrgtSDAEISeyADETIANLGLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQPRKfIFDLFDSLILLGVG 928
                  555555666667888999************************..5666654..6899998888.89999***********************99976654331113335552258899999**9998887765223337***********************************************************976377899999998654 PP

>> TIGR03410  urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.7   0.0   2.4e-23   1.6e-21      10     214 ..     721     935 ..     714     942 .. 0.79

  Alignments for each domain:
  == domain 1    score: 74.7 bits;  conditional E-value: 2.4e-23
    TIGR03410  10 YgesevlrdvslevekgevvavlGrngvGkttllkalvgllk..vksGeielegeditklkpeervkaGiayvpqGreifpkltveenlelgle.alkkk..ekkipeeiyelFPv..lkemlkRrgGd.....LsGGqqqqlaiaRaLvtePklllLDePteGiqPsiikeiekvikelakekdlail.lveqvldfaleladrylvlerG.evvaeg 214
                   ++ +v++ v+ +++ + ++a++G  g+Gkt+ll al+g  +  +++G++ ++g++ +           i++vpq   ++++ltv+en+  + +  l++   + +i e + e      l+ + +   Gd     +sGG ++ + i+  L+++P +l LDePt G+  s    + k +++l ++++++++ ++ q  +f  +l d++++l  G +++ +g
  MMETSP1061-20121228|47036_1 721 RQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKADIE----SHMDCIGFVPQDDIVYAELTVRENFIFAGKfRLPRGtsDAEISEYADETIANlgLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVsVIHQPRKFIFDLFDSLILLGVGgQMMYHG 935
                  56678999999999************************987522689*****99875543....33568*******************87654414444344667776666665541246666666676333336****************************************************995678999**********9998651555555 PP

>> TIGR00968  3a0106s01: sulfate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.4   0.0   3.1e-23   2.1e-21      12     206 ..     723     927 ..     716     938 .. 0.84

  Alignments for each domain:
  == domain 1    score: 74.4 bits;  conditional E-value: 3.1e-23
    TIGR00968  12 dfqalddvdlevktGslvallGpsGsGkstllrviaGlek..pdsGrilleGrdvtrvkvrdreiGfvfqhyalfkhltvrdniafGleir...kkdkakikakveellelvqleklgdr.....ypsqlsGGqrqrvalaralavepqvllldepfgaldakvrkelrawlrklhdevkvttvfvthdqee.alevadrivvlek 206
                  ++++++ v   ++   ++al+G sG+Gk++ll ++ G  +  +++G+++++G+ +  ++ +   iGfv q+  ++  ltvr+n  f  + r    ++ a+i +  +e +  ++l++++++         +sGG+++rv +   l  +p +l+ldep + lda     + + l +l ++  vt v v h+  +   ++ d +++l  
  MMETSP1061-20121228|47036_1 723 KVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKAD-IESHMDCIGFVPQDDIVYAELTVRENFIFAGKFRlprGTSDAEISEYADETIANLGLSRVANSpvgdvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQPRKfIFDLFDSLILLGV 927
                  46789999999**9***********************98844689*******9986.5566678**********************99998665456788888888888888887766541111166789************************************99********************865515678887777755 PP

>> TIGR03608  L_ocin_972_ABC: putative bacteriocin export ABC transporter, lactococcin 972 group
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.3   0.0   5.7e-23   3.8e-21      12     194 ..     725     911 ..     715     925 .. 0.81

  Alignments for each domain:
  == domain 1    score: 73.3 bits;  conditional E-value: 5.7e-23
    TIGR03608  12 eilkklslkiekGelvaivGesGsGKstlLnilgllekk..dsgkvilegkekaklkskkaskllreklgylFqnfaLlenetveenlelalklkk...kskkekekkkkevlekvglekklkkkiye.....lsgGekqRvalarillkeselilADEPtgsLDkknreevlellkelkee.gktiiivtHdp 194
                  ++++ +  +i    ++a++G sG+GK+ lLn l    ++   +g+v+++g++ a        +   + +g++ q+  +  + tv+en+  a k++    +s  e ++   e++ ++gl++  +  + +     +sgGek+Rv +   l+ ++++++ DEPt+ LD+ +   v++ l++l e+ g t++ v H+p
  MMETSP1061-20121228|47036_1 725 KVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHYgeTTGTVYINGHK-A------DIESHMDCIGFVPQDDIVYAELTVRENFIFAGKFRLprgTSDAEISEYADETIANLGLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKnGVTVVSVIHQP 911
                  677777778888899****************9987665411679******99.3......33445689********************9998876411145568888999********9999988754222338********************************************9765167899999986 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.8   0.0   4.9e-23   3.3e-21      13     197 ..     722     911 ..     711     920 .. 0.86

  Alignments for each domain:
  == domain 1    score: 73.8 bits;  conditional E-value: 4.9e-23
    TIGR02673  13 agveaLkdvslkiekgeflfltGasGaGkttllklllgaek..psrGevevagedvarlrerelpllRrkigvvfqDfkllkdrtvlenvalalev...rgkkeeeiqkrveevlelvgledkaka.....lpeelsgGeqqRvaiaRaivnkPelllaDePtGnlDdelserildllkel.nkrGttvivathde 197
                  ++v++++ v+ +i+   ++ l+G sGaGkt+ll+ l+g+++   + G+v ++g++        + +    ig v qD  +  + tv en  +a +    rg++++ei++  +e++  +gl+  a+      + + +sgGe++Rv i   ++ kP++l  DePt  lD++ +  +++ l++l +k+G+tv+ + h+ 
  MMETSP1061-20121228|47036_1 722 QKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKAD------IESHMDCIGFVPQDDIVYAELTVRENFIFAGKFrlpRGTSDAEISEYADETIANLGLSRVANSpvgdvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLvEKNGVTVVSVIHQP 911
                  56788999999**************************9886336889*****98765......4444567*******************9998665224689999***************9888651111145679****************************************998852789*******9975 PP

>> TIGR03375  type_I_sec_LssB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.0   3.5e-23   2.4e-21     477     686 ..     721     938 ..     684     940 .. 0.84
   2 ?   -3.6   0.1       7.4     5e+02     115     160 ..    1218    1263 ..    1211    1265 .. 0.80

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 3.5e-23
    TIGR03375 477 eeekaaLknvslkikpGekvaiiGriGsGKstllklllg..lyepteGsvlldgvdirqidpadlrrnigyvpqdvtLfyG.tlrdNialgap.....aaedeellraaelaGvtefvkkhpkGldlqigerGesLSgGQrqavalaRallkdppillLDEPtsalDnsseekllerLkella..dkTlvlvtH..rtslLelvdriivld.kGrivadGpkd 686
                   ++ +++++v+ +i+     a++G  G+GK++ll+ l+g   y  t G+v+++g+ +   d +   + ig+vpqd   ++  t+r+N  ++ +      ++d+e+ + a+ + ++  +++ +++    ++ rG  +SgG ++ v +   l+ +p+il+LDEPts lD+ss   ++++L++l++  + T+v v H  r+ + +l d +i+l   G+++  Gp +
  MMETSP1061-20121228|47036_1 721 RQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGraHYGETTGTVYINGHKA---DIESHMDCIGFVPQDDIVYAElTVRENFIFAGKfrlprGTSDAEISEYADETIANLGLSRVANSPVGDVKRRG--VSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEknGVTVVSVIHqpRKFIFDLFDSLILLGvGGQMMYHGPTE 938
                  56778889999999999999*****************98445889********9865...66666778******988876449****99887644455789*****999887666656666666666787777..9**********************************************9667799999995567899********97357888889875 PP

  == domain 2    score: -3.6 bits;  conditional E-value: 7.4
    TIGR03375  115 ailvkpeakldkraeelekakkkhWfwstlkeskrlyrdvliasll 160 
                    + ++  + +++ +++l++a  + W+++++++s ++y + l+ s +
  MMETSP1061-20121228|47036_1 1218 FFAINILSTIEHSSQALIAALFATWIRHPVASSASYYVHFLLLSWV 1263
                   55555566678888999999999***************99998865 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   72.7   0.0     1e-22   6.7e-21      13     215 ..     719     926 ..     710     931 .. 0.87

  Alignments for each domain:
  == domain 1    score: 72.7 bits;  conditional E-value: 1e-22
    TIGR02982  13 kgelrkqvlfdinleiepgeiviltGpsGsGkttlltligglrsvqeGelkvlgkelkgasekelvqvrrkiGyifqahnllesltaeqnvrmale..lkeklsakeakakaeelleavglee.....rldykpedlsgGqkqrvaiaralvarPklvladePtaaldkksgrevvellqklareqgttillvthdnr..ildvadrivkme 215
                   g+++ +v++ +  +i+   +  l G sG+Gkt ll+ + g  +  e + +v+ +     +++++      iG++ q   ++  lt+++n  +a +  l + +s +e ++ a+e + ++gl         d k + +sgG k+rv i   l+a+P++++ dePt+ ld++s+  v++ l++l +++g+t++ v h +r  i+d+ d ++ + 
  MMETSP1061-20121228|47036_1 719 IGRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHYGETTGTVYIN----GHKADIESHMDCIGFVPQDDIVYAELTVRENFIFAGKfrLPRGTSDAEISEYADETIANLGLSRvanspVGDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQPRkfIFDLFDSLILLG 926
                  578899999****************************999988777766666543....345556666678********************998651167889999999************996666556789999************************************************************9978899999888765 PP

>> TIGR00960  3a0501s02: type II secretory pathway family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.7   0.1   4.4e-22     3e-20      19     197 ..     727     910 ..     716     925 .. 0.85

  Alignments for each domain:
  == domain 1    score: 70.7 bits;  conditional E-value: 4.4e-22
    TIGR00960  19 ldnvtvkiekGelvflvGhsGaGkstllklilgiek..psaGkirvsgqdltklrdrevpflrrqiGivfqdfkllsdrtvydnvalalri...iGvkgreieervsaalekvGlkdkaka.....lPvqlsgGeqqrvaiaravvnkPallladePtgnlddelsrdilellee.vnraGttvlvathd 197
                  ++ vt +i    ++ l+G sGaGk++ll+ ++g+++   ++G ++++g++        +      iG v qd  +  + tv +n ++a +     G++  ei+e + +++ ++Gl+  a++         +sgGe++rv+i   ++ kP++l+ dePt+ ld   ++ +++ l++ v++ G+tv+   h+
  MMETSP1061-20121228|47036_1 727 VNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKAD------IESHMDCIGFVPQDDIVYAELTVRENFIFAGKFrlpRGTSDAEISEYADETIANLGLSRVANSpvgdvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNlVEKNGVTVVSVIHQ 910
                  566778888889*********************98744699*******9754......5555578**********************977633459999****************9887652221123469***************************************9887736899*****99886 PP

>> TIGR02315  ABC_phnC: phosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.1   0.0   6.1e-22   4.1e-20      15     206 ..     724     911 ..     708     942 .. 0.81

  Alignments for each domain:
  == domain 1    score: 70.1 bits;  conditional E-value: 6.1e-22
    TIGR02315  15 kqalknvnleikkGelvaviGlsGaGkstllrsinrlve..issgsillegkevtklkkkelrklrkkigmifqeynlierltvlenvLs.grlgakstlksllglfseedkekAlelLervglaelaakradqLsGGqqqRvaiaRalaqqpklilaDEPiasLDpksskqvmdllkrinkekgitvivnlHqv 206
                   ++++ v   i+   ++a++G sGaGk+ ll ++ +  +  ++ g+++++g      +k++++++   ig++ q+  + ++ltv en +  g++   +   s  ++ + +d+++A   L+rv  + + + +   +sGG+++Rv i   l+ +p++++ DEP++ LD +s+  vm+ l ++ +++g+tv+  +Hq 
  MMETSP1061-20121228|47036_1 724 VKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYING------HKADIESHMDCIGFVPQDDIVYAELTVRENFIFaGKFRL-PRGTSDAEISEYADETIANLGLSRVANSPVGDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQP 911
                  345566666788889****************99987665335556666655......5678999***********************776155554.4445566777889999********************************************************************************94 PP

>> TIGR03873  F420-0_ABC_ATP: proposed F420-0 ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.0   0.0   5.8e-22   3.9e-20      10     213 ..     720     928 ..     713     939 .. 0.77

  Alignments for each domain:
  == domain 1    score: 70.0 bits;  conditional E-value: 5.8e-22
    TIGR03873  10 raggrlivddvdvtaPaGaltgllGPnGsGkstllrllaGlla..pdaGevdlagadlkalsrrararrvalveqdsdaevplsvrdvval.G..riPhrslfa.adsdedaevvdralarvelssladrdlstlsGGerqrvhlaralaqePklllldePtnhldvsaqlellalvrela.aegvtvvvalhdl.nlaasvcdhvvvldgG 213
                   ++++ +v+ v+      ++t+l+G  G+Gk+ ll+ l G  +   ++G+v ++g+        +    +  v qd    ++l+vr+  ++ G  r+P  +  a  +  +d+ +++  l+rv  s + d +   +sGGe++rv++   l  +P++l+ldePt  ld s+ l +++ +++l+ ++gvtvv  +h   ++   + d +++l+ G
  MMETSP1061-20121228|47036_1 720 GRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKADI---ESHMDCIGFVPQDDIVYAELTVRENFIFaGkfRLPRGTSDAeISEYADETIANLGLSRVANSPVGDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVeKNGVTVVSVIHQPrKFIFDLFDSLILLGVG 928
                  4566789999999999999*********************76422688999999976543...44566799***************987762433555433322033345666666666666666666777889**********************************************955799*******8614567788999988754 PP

>> TIGR02868  CydC: thiol reductant ABC exporter, CydC subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.2   0.0   1.7e-21   1.2e-19     332     529 ..     705     910 ..     682     911 .. 0.77

  Alignments for each domain:
  == domain 1    score: 68.2 bits;  conditional E-value: 1.7e-21
    TIGR02868 332 kptlelrdl..svsypgaee.vlkgvsldlepGervavvGasGaGKstLlallaglld..plkGevtldgvsvaslsesevrrvvsvlaqdaHlFdt.tvreNlrlarpda.....tdeellaaLervgLadwlraLpdGldtklgeggarlSGGerqRlalARaLladapvllLDEPtehLDaeteeelledLl..aaeegrtvvlvthr 529
                   ++l+++dl  sv+   ++  v++ v+  ++    +a++G sGaGK+ Ll++l g       +G+v ++g    +++ +    ++ +++qd  +++  tvreN  +a +       +d+e+++   ++  +  l ++ +    +++ +g  +SGGe++R+ +   L+a+  +l LDEPt +LDa  +  +++ L+    ++g tvv v h+
  MMETSP1061-20121228|47036_1 705 GVDLCFKDLclSVNIGRQKVkVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGH---KADIESHMDCIGFVPQDDIVYAElTVRENFIFAGKFRlprgtSDAEISEYADETIANLGLSRVANSPVGDVKRRG--VSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNnlVEKNGVTVVSVIHQ 910
                  6778888862256666677689********99999*******************976422689*******3...333445579************854*******99764334445999999887765444444443333333555554..9******************************************95445677789999998 PP

>> TIGR03265  PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.3   0.0   4.3e-21   2.9e-19      16     195 ..     723     911 ..     715    1000 .. 0.87

  Alignments for each domain:
  == domain 1    score: 67.3 bits;  conditional E-value: 4.3e-21
    TIGR03265  16 aftalkdislsvkkgelvclLGPsGCGkttLLriiaGLek..qdaGaillggrditrlppqkrdyGivfqsYaLfPnltvaeniayGLk...nkklkreevaerveelLelvglsgseekyPgq.....lsGGqqqrvaLaralalsPglLLLDePlsaLDakvrekLreelkklqrklgvttimvthdq 195
                  ++++++ +   ++   + +l+G sG Gkt+LL +++G  +  +++G+++++g++  ++ ++    G+v q   ++ +ltv+en  +  k    ++++ +e++e  +e ++ +gls +++   g      +sGG ++rv ++  l+ +P++L+LDeP s LDa     + + l++l +k gvt + v h+ 
  MMETSP1061-20121228|47036_1 723 KVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKA-DIESHMDCIGFVPQDDIVYAELTVRENFIFAGKfrlPRGTSDAEISEYADETIANLGLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQP 911
                  5677888888999999*********************87644799*******985.566777889******************988654233689999****************9998765554222238**********************************************************75 PP

>> TIGR01166  cbiO: cobalt ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.8   0.1   5.5e-21   3.7e-19       4     185 ..     723     909 ..     721     911 .. 0.82

  Alignments for each domain:
  == domain 1    score: 66.8 bits;  conditional E-value: 5.5e-21
    TIGR01166   4 eaevlkglnlavergevlallGanGaGkstlllhlnGllr..PksGkvlldGeeldysrkgllelrkkvalvlqdpddqlfaa.dvdedvafg.plnl..Glseaeverrvrealaavdisgleerpt.....hllsgGekkrvaiagavalrpdvllldePtagldpaGaeqlleilrklre.eGktvvisth 185
                  +++v++++  +++  +++al+G  GaGk+ ll+ l G  +   ++G+v ++G++      ++ ++   +++v qd  d ++a  +v e+  f+    l  G s+ae+++  +e +a +++s +++ p+     + +sgGekkrv i   +  +p +l+ldePt+gld++ a  +++ l++l+e +G tvv   h
  MMETSP1061-20121228|47036_1 723 KVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKA-----DIESHMDCIGFVPQD--DIVYAElTVRENFIFAgKFRLprGTSDAEISEYADETIANLGLSRVANSPVgdvkrRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEkNGVTVVSVIH 909
                  6789999999999999*********************865336899999999865.....556677778888663..44444337899999962334444************************998733332568********************************************98726888887666 PP

>> TIGR02211  LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   66.3   0.0   8.8e-21   5.9e-19       7     202 ..     713     911 ..     708     923 .. 0.87

  Alignments for each domain:
  == domain 1    score: 66.3 bits;  conditional E-value: 8.8e-21
    TIGR02211   7 ltksykegkleievlkgvsleiekgelvaivGssGsGkstllhllggldk..ptsGevllkGkelsklssneraklrnkklGfiyqfhhlladftalenvamP...lliskkskkeakerakellekvglekrink.....kpselsGGerqrvaiaralvnkPklvladePtgnldkktakkifelllelnkekntallvvthdl 202
                  l+ s + g+++++v++ v  +i+   ++a++G sG+Gk+ ll  l g  +   t+G+v+++G++ +  s+ +        +Gf+ q   + a++t+ en  +     l + +s +e  e a e + ++gl++ +n      k   +sGGe++rv i   l+ kP++++ dePt+ ld+++a  +++ l++l ++++++++ v h+ 
  MMETSP1061-20121228|47036_1 713 LCLSVNIGRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKADIESHMD-------CIGFVPQDDIVYAELTVRENFIFAgkfRLPRGTSDAEISEYADETIANLGLSRVANSpvgdvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQP 911
                  56666778999***********************************98763379********9987666554.......69******************988633357788999999999****9999999888761121244568******************************************************999975 PP

>> TIGR00972  3a0107s01c2: phosphate ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   0.0   1.5e-19   9.8e-18      12     202 ..     722     910 ..     714     939 .. 0.83

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 1.5e-19
    TIGR00972  12 gekealkdvnleikknkvtaliGpsGcGkstllrslnrlndlveevrieGkvllegkdiydkkldvvelrkkvGmvfqkpnpfp.msiydnvayg..lrlkgikdkkeldeiveesLkkaalwdevkdkl.kksalsLsGGqqqrlciaralavePevlLlDePtsaLDpiatekieeliqeLkkk..ytivivthn 202
                  ++ ++++ v+  i+ +++tal+G sG+Gk++ll +l       +  +++G+v+++g+     k d+ +    +G v q    ++  ++ +n  ++   rl   ++ +e++e ++e++ + +l    ++ + + +  ++sGG ++r+ i   l  +P +l lDePts LD+ ++  + + +++L +k  +t+v v h+
  MMETSP1061-20121228|47036_1 722 QKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNAL---CGRAHYGETTGTVYINGH-----KADIESHMDCIGFVPQDDIVYAeLTVRENFIFAgkFRLPRGTSDAEISEYADETIANLGLSRVANSPVgDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKngVTVVSVIHQ 910
                  56789999***********************98665...5566667899***98875.....6788888899*******9999879*****9998456666778999***************977777662456789**********************************************87756888888886 PP

>> TIGR01184  ntrCD: nitrate ABC transporter, ATP-binding proteins C and D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.5   0.0   2.7e-19   1.8e-17       7     191 ..     733     928 ..     727     935 .. 0.83

  Alignments for each domain:
  == domain 1    score: 61.5 bits;  conditional E-value: 2.7e-19
    TIGR01184   7 eikkgefislighsgcgkstllnliaglek..ptsgavilegkeitepgpdrm..vvfqnysllpwltvrenialavdavl.rdlskserreiveehielvglreaadkrpeq.....lsggmkqrvaiaralsirpklllldepfgaldaltreelqekllkiveearvtvlmvthdvdeall.lsdrvvmltng 191
                  +i+   + +l+g sg gk++lln ++g ++   t+g+v+++g++ +          v q+  ++  ltvren  +a +  l r +s +e  e  +e+i+ +gl++ a+  +++     +sgg k+rv i   l  +p +l+ldep   lda +   + + l ++ve++ vtv+ v h+  + ++ l d +++l  g
  MMETSP1061-20121228|47036_1 733 RIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKADIESHMDCigFVPQDDIVYAELTVRENFIFAGKFRLpRGTSDAEISEYADETIANLGLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQPRKFIFdLFDSLILLGVG 928
                  677777889******************98733689*******9988655544402466999999************99665166889999*************9998765543222228**********************************************************9887776577777777666 PP

>> TIGR02204  MsbA_rel: ABC transporter, permease/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8   0.0   3.2e-19   2.2e-17     350     530 ..     721     904 ..     699     912 .. 0.80

  Alignments for each domain:
  == domain 1    score: 60.8 bits;  conditional E-value: 3.2e-19
    TIGR02204 350 rpdqkaldgldltvrpGetvalvGPsGaGkstllelll..rfydPqsGailldGvdlreldpeelrerlalvpqdsalfaa.svleniryGrp.....dasdeeveaaakaaeadefisklpeGydtllGe.rgvtLsGGqkqriaiarailkdapiLLLdeatsaLdaeseqlvqqaleelmkgrttlv 530
                  r++ k+++ +  ++r     al+G sGaGk+ ll+ l    +y  + G++ ++G    ++d e   + + +vpqd  ++a+  v+en  +          sd+e+ + a+++ a+  +s   +  ++++G+ +   +sGG k+r+ i   ++++  iL+Lde ts Lda s  lv ++l++l+++    v
  MMETSP1061-20121228|47036_1 721 RQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCgrAHYGETTGTVYINGH---KADIESHMDCIGFVPQDDIVYAElTVRENFIFAGKfrlprGTSDAEISEYADETIANLGLS---RVANSPVGDvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTV 904
                  66778899999999988899**************98853259************7...5677788899***********974799**98865401111345556666665555555444...555677776233457*********************************************98765444 PP

>> TIGR01187  potA: polyamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.7   0.0   3.9e-19   2.6e-17       1     162 [.     742     912 ..     742     938 .. 0.86

  Alignments for each domain:
  == domain 1    score: 60.7 bits;  conditional E-value: 3.9e-19
    TIGR01187   1 lLGpsGsGkttlLrllaGleel..dsGkilldgedvtevpaekrsvnvvfqsyaLfPhmtveenvafgLkm...rkvpkaeikervkeaLelvqlee.....fakrkpsqlsGGqrqrvalaravvkkPkiLLlDeplsaLDkkLrdqmqlelkalqeklGitvvlvthDqe 162
                  l+G sG+Gkt lL  l G  +    +G + ++g++ +++ ++   ++ v q+  ++  +tv en  f+ k    r++  aei+e   e +    l+      +++ k   +sGG ++rv +   ++ kP iL+lDep s LD      + + l++l ek G+tvv v h  +
  MMETSP1061-20121228|47036_1 742 LMGGSGAGKTSLLNALCGRAHYgeTTGTVYINGHK-ADIESHMDCIGFVPQDDIVYAELTVRENFIFAGKFrlpRGTSDAEISEYADETIANLGLSRvanspVGDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQPR 912
                  79****************887522679****9987.67899**************************9887334589999**9999888666666550001156678899***********************************************************765 PP

>> TIGR01189  ccmA: heme ABC exporter, ATP-binding protein CcmA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.5   0.0   5.5e-19   3.7e-17       7     184 ..     718     907 ..     714     915 .. 0.83

  Alignments for each domain:
  == domain 1    score: 60.5 bits;  conditional E-value: 5.5e-19
    TIGR01189   7 aveRgervlleglsfelaaGealvveGpnGiGKttLLRilaGLlk..pesGevelndkelaeqrdelaeellylgHldglKaeLsalEnLkfyaallq.......seqk..tveealekvgLsgledlpvaq.....LsAGqkrRlalarLllskaplWiLDEPttalDkegvellaellaaHlargGivllat 184
                   + R++ +++++++ ++    + ++ G  G+GKt+LL  l G  +   ++G+v +n+++ a+ + +  + + ++   d + aeL+++En  f  ++         +      ++e+++++gLs +++ pv       +s G k+R+ ++  l++k  +  LDEPt  lD+++  l+++ l++ ++++G+++++ 
  MMETSP1061-20121228|47036_1 718 NIGRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHK-ADIE-SHMDCIGFVPQDDIVYAELTVRENFIFAGKFRLprgtsdaE--IseYADETIANLGLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSV 907
                  56799999999******9999*********************98833578******665.4455.45599**********************98886544544322..12367889999*****99999864222238**************************************************988764 PP

>> TIGR03411  urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0     7e-19   4.7e-17      14     215 ..     723     925 ..     713     939 .. 0.77

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 7e-19
    TIGR03411  14 gfkalndlslsveegelrviiGpnGaGkttllDvitGktr..pdeGsvlfkgkdltklkeaeiarlGigRkfqkpsvfeeltvlenlelalkadksvlallfarlskeekerieev.leligLeekadkkaglLshGqkqwLeigmllvqepkllllDePvaGmtdeetektaellkelakersvvvve..h.Dmefvrelaekvtvl 215
                   +k +n ++ +++ + + +++G  GaGkt ll++++G+++   ++G+v+++g++       e     ig   q   v+ eltv+en+  a k  +    +  a++s+ ++e+i+++ l+ +  +   d k   +s G+k++++ig+ l+ +p++l+lDeP++G+ ++    + + l++l +++ v vv   h   +f+ +l +++  l
  MMETSP1061-20121228|47036_1 723 KVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKAD----IESHMDCIGFVPQDDIVYAELTVRENFIFAGKF-RLPRGTSDAEISEYADETIANLgLSRVANSPVGDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSviHqPRKFIFDLFDSLILL 925
                  57889999999***************************983357899999998533....333445799999***************998654.4445555556666666666554466677777777777889*********************************************99987766532231456776666665555 PP

>> TIGR01978  sufC: FeS assembly ATPase SufC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   0.3   1.5e-18     1e-16       8     205 ..     717     912 ..     708     940 .. 0.79

  Alignments for each domain:
  == domain 1    score: 59.0 bits;  conditional E-value: 1.5e-18
    TIGR01978   8 vsv..edkeiLkglnlevkkGevhaimGpnGsGkstLskvlaghekyevtsGeiklkgqdlleleveeraraGlflafqapeeipGvsnk.eflrsalnavrkargeeeldllefekllkeklelleldeelleRslneGfsGGekkrneilqlallePklaiLDeiDsGlDvDalkivaegvnklree.ekalliithyer 205
                  v++  ++ ++++ ++  ++  ++ a+mG  G+Gk  L ++l g+ +y  t+G+++++g++  ++e        + +  q     + ++++ +f+ +  + +   rg+++ +++e++++  ++l l ++ ++ +      G sGGekkr +i   ++ +P++  LDe  sGlD  +  +v++ +n+l e+   +++ + h+ r
  MMETSP1061-20121228|47036_1 717 VNIgrQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHYGETTGTVYINGHKA-DIE---SHMDCIGFVPQDDIVYAELTVReNFIFAG-KFR-LPRGTSDAEISEYADETIANLGLSRVANSPVGDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKnGVTVVSVIHQPR 912
                  3331135789999*********************************************975.333...33344555567666667777651566544.433.368999999*************99999999999999**************99********************************9983455555777765 PP

>> TIGR03740  galliderm_ABC: lantibiotic protection ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.4   0.0   2.6e-18   1.7e-16      12     181 ..     723     908 ..     714     938 .. 0.80

  Alignments for each domain:
  == domain 1    score: 58.4 bits;  conditional E-value: 2.6e-18
    TIGR03740  12 kqavvnnvslkvkknsvygllGpnGaGkstllklltGllr..ktsGeilldgrewtr.kdlkkiGsliesPalyenltarenlkvrtll...lglpesriee....vlkivdlentekkkakq.....fslGmkqrlGiaiallnkPkllildePtnGldPlG.iqelreliksfpekGitvilss 181
                  k +vvn v+ +++ +++ +l+G  GaGk++ll  l+G  +  +t+G ++++g++    +++  iG + ++  +y +lt ren+    +    +g ++++i+e     +  ++l+      +++      s G k+r+ i + l+ kP +l ldePt Gld    +  ++ l + ++++G+tv+   
  MMETSP1061-20121228|47036_1 723 KVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKADIeSHMDCIGFVPQDDIVYAELTVRENFIFAGKFrlpRGTSDAEISEyadeTIANLGLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSaLLVMKSLNNLVEKNGVTVVSVI 908
                  5689*********************************8653389*********9975157888*******************9887665222577888886511115556667666665554422222799*****************************875156777888888999***98655 PP

>> TIGR03258  PhnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   2.6e-18   1.8e-16      23     224 ..     726     937 ..     713     968 .. 0.79

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 2.6e-18
    TIGR03258  23 vlddlsleieaGellallGksGsGkttllravaGfvkadG..GrllvadrdlthlppykrnlallvqnyalfphlkveenvafG..lra.rkqskaliaervadalklvqlsdaaar.....lpaqlsGGqqqrvalaralvvrpdvllldeplsaldaqlrasvveelkalhrelpeltvlyvthdrde.alvladkillm.keGslialGet 224
                  v++ ++  i    + al+G sG+Gkt+ll a+ G  +     G++ + ++  + +  +   ++++ q+  ++  l+v en  f   +r  r  s+a+i+e   +++  ++ls +a+          +sGG ++rv +   l+ +p +l+ldep s lda     v++ l++l ++   +tv+ v h+  +  + l d + l+   G+++ +G t
  MMETSP1061-20121228|47036_1 726 VVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHYGEttGTVYINGHK-ADIESHMDCIGFVPQDDIVYAELTVRENFIFAgkFRLpRGTSDAEISEYADETIANLGLSRVANSpvgdvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEK-NGVTVVSVIHQPRKfIFDLFDSLILLgVGGQMMYHGPT 937
                  567777788888999*******************887544569****9976.67899************************99723443256899*****999998888888766541111156789*********************************************987.579******98555155677765544145566666654 PP

>> TIGR01842  type_I_sec_PrtD: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   3.7e-18   2.5e-16     327     534 ..     720     933 ..     696     939 .. 0.80

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 3.7e-18
    TIGR01842 327 peekkktlkgisfalkaGealaiiGpsgsGkssLarllvGvwl..pasGsvrlDgadlkqwdretlGksiGYlPqd.veLfeGtvaeniaRfeenadaekvieaaklagvhelilrl..pkGYdteige.gGaaLsgGqrqRiaLaRalygdPklvvLDePnanLDeeGeqalakalkel.karkitvvvithrps..llelvdkilvlkdGalkaf 534
                   ++k k+++ ++ +++   + a++G sg+Gk+sL   l G  +  +++G+v ++g    + d e+    iG++Pqd +   e tv en    ++   ++   +a     + e i++l   +  ++ +g+ +  ++sgG ++R+ +   l  +P ++ LDeP + LD++    ++k l++l  ++++tvv + h+p+  + +l d +++l  G + ++
  MMETSP1061-20121228|47036_1 720 GRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGH---KADIESHMDCIGFVPQDdIVYAELTVRENFIFAGKFRLPRGTSDAEISEYADETIANLglSRVANSPVGDvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLvEKNGVTVVSVIHQPRkfIFDLFDSLILLGVGGQMMY 933
                  456778999999999999999*******************76522799*****996...67999999********64888899*****9866664444444444444457788876511677899999834678*******************************************9962678899999999887446789999988876544433 PP

>> TIGR03796  NHLM_micro_ABC1: NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.0   2.8e-17   1.9e-15     494     671 ..     726     910 ..     715     937 .. 0.76

  Alignments for each domain:
  == domain 1    score: 54.0 bits;  conditional E-value: 2.8e-17
    TIGR03796 494 liedfslslkpGqrvAlvGgsGsGkstiaklvaG..lyepwsGeilfDgkpreeiprevlanslalvdqd.ivlfegtvrdnltlwdetipeedlvrAakDAaihdvilarpggy......eaelae.gganlsGGqrqRleiARaLvknPsiLilDEatsaLDaetEkaidenl....rrRgctciivaHR 671
                  +++ ++ +++  +  Al+GgsG+Gk  +   ++G   y +++G+++++g+++ +i+    + ++ +v qd iv  e tvr+n  +      + +l r + DA i++   ++ +++      ++ + +   + +sGG+++R++i   L+++PsiL lDE ts LDa+    +++ l     + g+t++ v H 
  MMETSP1061-20121228|47036_1 726 VVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGraHYGETTGTVYINGHKA-DIES--HMDCIGFVPQDdIVYAELTVRENFIFAG----KFRLPRGTSDAEISEYADETIANLglsrvaNSPVGDvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLnnlvEKNGVTVVSVIHQ 910
                  566666667767788*******************545899*********876.5554..5699****9853888899*****97654....567888888888876555444443111111444444234679*********************************99888876522225789999999885 PP

>> TIGR01288  nodI: nodulation ABC transporter NodI
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.2   0.0   3.4e-17   2.3e-15      19     193 ..     726     909 ..     713     937 .. 0.79

  Alignments for each domain:
  == domain 1    score: 54.2 bits;  conditional E-value: 3.4e-17
    TIGR01288  19 vvndlsftiaagecfgllgpngagkstiarlvlglispdegkitvlgepvpararlarakigvvpqfdnldreftvrenllvfgryf...glstreieevipsllefarleska.....dvrvadlsggmkrrltlaralindpqllildepttgldpharhliwerlrsllar.gktilltth 193
                  vvn ++  i       l+g  gagk+++   + g +   e + tv  +   a +      ig vpq d +  e+tvren++  g++    g s  ei e     +    l   a     dv+   +sgg k+r+ +   l+  p +l ldept+gld  +  l+ + l  l+ + g t++   h
  MMETSP1061-20121228|47036_1 726 VVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHYGETTGTVYINGHKADIESHMDCIGFVPQDDIVYAELTVRENFIFAGKFRlprGTSDAEISEYADETIANLGLSRVAnspvgDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKnGVTVVSVIH 909
                  6777777777777789***************************************************************98888753222445566655544443333344444000115666668********************************************99753777776666 PP

>> TIGR00958  3a01208: antigen peptide transporter 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.2   0.0   4.9e-17   3.3e-15     491     673 ..     721     910 ..     707     918 .. 0.84

  Alignments for each domain:
  == domain 1    score: 53.2 bits;  conditional E-value: 4.9e-17
    TIGR00958 491 rpdkpvlkdLtftlepGevvalVGPsGsGKStvaall..enlYqPtgGqvllDgkplkeydhkylhrkvalVgqEPvlfsg.svreNiaYG....ltkte.deevtaaakaanahdFiselekgydtevgekGsqlsgGqkqriAiARALvrkPrvLiLDeAtSALDa....eveqllqesksaksrtvlliahr 673
                  r +++v++  t  ++  + +al G sG GK +    l  +  Y  t+G+v + g++    d ++    ++ V q+ ++++  +vreN  +     l + + d+e+   a ++ a+  +s + +    +v  +G  +sgG k+r+ i   L+ kP +L LDe tS LDa     v + l++  ++++ tv+++ h+
  MMETSP1061-20121228|47036_1 721 RQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALcgRAHYGETTGTVYINGHK---ADIESHMDCIGFVPQDDIVYAElTVRENFIFAgkfrLPRGTsDAEISEYADETIANLGLSRVANSPVGDVKRRG--VSGGEKKRVNIGLELMAKPSILFLDEPTSGLDAssalLVMKSLNNLVEKNGVTVVSVIHQ 910
                  7889999999*****99***************9877745679************86...455566789***********8659****8775132244444589999999999999999999988888888888..69*******************************5555555666678899999***99997 PP

>> TIGR01193  bacteriocin_ABC: ABC-type bacteriocin transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.5   0.0   9.4e-17   6.3e-15     450     668 ..     684     910 ..     677     934 .. 0.78

  Alignments for each domain:
  == domain 1    score: 52.5 bits;  conditional E-value: 9.4e-17
    TIGR01193 450 evylvdsefkekkkltelenlngdievndvsysyGygs...evledislkikknekitlvGlsGsGkstlakllvk..ffqaesGeillngkslkdidkhelrqlinylPqePfifsG.silenlllgakenvsqeeikkaveiaeikdd.ieklplGyqte..ls.eeassisgGqkqrlalarallsdskvlildestsnldl...ltekkivenllklkdktiifvahr 668
                   ++l + e  ++  ++ + ++  d+ ++d+  s   g+   +v++ ++ +i+ +  ++l+G sG+Gk++l   l +   + ++ G++ +ng++ +di+ h     i ++Pq+ ++++  ++ en+++  k ++ + +     ei+e  d+ i +l l   ++  +  ++   +sgG k+r+ +   l+++  +l lde ts ld    l+  k ++nl++ +  t++ v h+
  MMETSP1061-20121228|47036_1 684 KIMLSEEEDINDDCTELMDSPGVDLCFKDLCLSVNIGRqkvKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGraHYGETTGTVYINGHK-ADIESH--MDCIGFVPQDDIVYAElTVRENFIFAGKFRLPRGTS--DAEISEYADEtIANLGLSRVANspVGdVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDAssaLLVMKSLNNLVEKNGVTVVSVIHQ 910
                  5666666777766555556677899999987777666522368999999***********************99864489***********98.567766..589**********9864999******9988877654..44666765433777766554441133145678********************************6333777888888888888899999994 PP

>> TIGR02324  CP_lyasePhnL: phosphonate C-P lyase system protein PhnL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.0       6.1   4.1e+02      43      71 ..     524     556 ..     517     580 .. 0.73
   2 !   49.7   0.5   9.7e-16   6.5e-14      19     208 ..     722     910 ..     710     916 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.9 bits;  conditional E-value: 6.1
    TIGR02324  43 sGaGkstllkslyanY....lpesgrilvrheg 71 
                  + +Gk ++ + ++a+Y    l+++gr++v  e+
  MMETSP1061-20121228|47036_1 524 APSGKVSVTRPVFAKYflqaLTDTGRMTVSYEE 556
                  458************933333456676666655 PP

  == domain 2    score: 49.7 bits;  conditional E-value: 9.7e-16
    TIGR02324  19 vklpvlkevsleveaGelvalsGksGaGkstllkslya..nYlpesgrilvrhegeivdlvkaserevlevRrktigyvsqfLrviPRvsale...vvaepllelGvereearakakellarlniper....LWslaPatfsGGekqRvniaraliadrPiLLLdePtasLdaanrkvvvelikea.kargaaligifhd 208
                   k++v++ v+ +++   ++al+G sGaGk +ll +l +   Y   +g++ ++ + + +           e     ig+v q   v   ++ +e    + +  l +G++++e  + a+e +a+l ++      +  +     sGGek+Rvni   l+a+  iL LdePt+ Lda+    v++ ++++  ++g+++++++h+
  MMETSP1061-20121228|47036_1 722 QKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGraHYGETTGTVYINGHKADI-----------ESHMDCIGFVPQDDIVYAELTVREnfiFAGKFRLPRGTSDAEISEYADETIANLGLSRVanspVGDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLvEKNGVTVVSVIHQ 910
                  47899999**9***99*******************98511455555555555444333...........334466788888777777777776431344667889******************985321111445667899****************8889***************99999888752678*********6 PP

>> TIGR02633  xylG: D-xylose ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.9   0.1   1.3e-16   8.9e-15     270     459 ..     721     907 ..     708     931 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.9 bits;  conditional E-value: 1.3e-16
    TIGR02633 270 nrkikrvddvsfslrrGeilGvaGlvGaGrtelvqalfG.aypGkfegevfldgkqvdirnpaqairagialvpedrkrdGivpvlgvGknitlav...lkkfakksrideaaelkaieeeikrlkvktaspdlpiarlsGGnqqkavlakllllnprvlildeptrGvdvGakyeiyklinqla.qeGvaiivv 459
                   +k+k v+ v+  +r   +  + G  GaG+t l++al G a+ G+  g v+++g++ di + +++i     +vp+d   d + ++l+v +n  +a    l + ++ ++i e a++ + + +++r+   +   d+   ++sGG++++  +   l+ +p +l ldept G+d  +   + k +n+l+ ++Gv+++ v
  MMETSP1061-20121228|47036_1 721 RQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGrAHYGETTGTVYINGHKADIESHMDCI----GFVPQD---DIVYAELTVRENFIFAGkfrLPRGTSDAEISEYADETIANLGLSRVAN-SPVGDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVeKNGVTVVSV 907
                  5789999****999999999******************96789****************9998875....79**99...567799*******99962225555667777787887777777777643.33446777789****************************************9999983579999865 PP

>> TIGR03269  met_CoM_red_A2: methyl coenzyme M reductase system, component A2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.5   0.0    0.0005     0.034     292     339 ..     719     766 ..     709     816 .. 0.68
   2 !   39.6   0.0   7.6e-13   5.1e-11     167     256 ..     849     939 ..     843     955 .. 0.89

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 0.0005
    TIGR03269 292 vdrGvvkavdnvslevkekeifGlvGtsGaGkttlskilaGvleptsG 339
                  + r  vk v++v+  ++ k +  l+G sGaGkt+l + l G  +  + 
  MMETSP1061-20121228|47036_1 719 IGRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHYGET 766
                  456667777777777777777777777777777776666665443332 PP

  == domain 2    score: 39.6 bits;  conditional E-value: 7.6e-13
    TIGR03269 167 rdlsGGekqrvvlarqlakeplllladeptGtldpktaklvhealkeavkeedislvltshwp.eviedlsdkaillekGeiveeGepeev 256
                  r +sGGek+rv +  +l  +p +l+ dept  ld ++a lv + l++ v ++++++v   h p + i dl d  ill  G  ++   p+e 
  MMETSP1061-20121228|47036_1 849 RGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQPrKFIFDLFDSLILLGVGGQMMYHGPTEG 939
                  789**********************************************************9945899*********98876666556555 PP

>> TIGR02203  MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   1.6e-16   1.1e-14     337     524 ..     715     904 ..     680     928 .. 0.79

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 1.6e-16
    TIGR02203 337 vtfrypgddrealdsislkveaGevvalvGrsGsGkstlvnllp.R.FyepdsGeillDgvdladlkLasLRrqvalvsqdvvLFdd.tiaenvaYgeleevdeaeveealaaaylkdlvdkl..peGldtevGengsk.LsGGqRqRlaiaRallkdaPiLiLDeatsaLDneseRlvqaaLerlmkgRttlv 524
                  ++++ + +++++++ +  +++  +++al+G sG+Gk++l+n l  R  y  ++G + ++g++     ++s    + +v qd +++ + t+ en  ++ +  +++    +a    y+ + + +l   +  + +vG+   + +sGG ++R+ i   l+    iL LDe ts LD+ s  lv ++L++l ++    v
  MMETSP1061-20121228|47036_1 715 LSVNIGRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCgRaHYGETTGTVYINGHKA---DIESHMDCIGFVPQDDIVYAElTVRENFIFAGKFRLPRGT-SDAEISEYADETIANLglSRVANSPVGDVKRRgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTV 904
                  4677788999*****************************9977535479999********974...466777889*****86666544******999886655543.4444555667777665113456788998554439********************************************987654433 PP

>> TIGR03771  anch_rpt_ABC: anchored repeat-type ABC transporter, ATP-binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.0   0.0   2.4e-16   1.6e-14       8     172 ..     739     910 ..     733     929 .. 0.75

  Alignments for each domain:
  == domain 1    score: 52.0 bits;  conditional E-value: 2.4e-16
    TIGR03771   8 llgllGpnGaGkttllrailglik..vakGsvkvagkssr..kgrreiGyvpqrhefawdfpidveqtvlsGragliGllrrpkkadfa.avadalervklteladrpvGe.....lsGGqrqrvlvaralavkpslllldepftGldlpsqellvelfeela.gegtailmtthd 172
                  + +l+G  GaGkt+ll a+ g  +  ++ G+v ++g+++   + +  iG+vpq      +  +  e+ +++G+ +l    r ++ a+     ++++ +  l+++a+ pvG+     +sGG+++rv +   l  kps+l+ldep +Gld  s  l+++ +++l  ++g +++ + h+
  MMETSP1061-20121228|47036_1 739 MTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKADieSHMDCIGFVPQDDIVYAELTVR-ENFIFAGKFRLP---RGTSDAEISeYADETIANLGLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVeKNGVTVVSVIHQ 910
                  679****************9987522789******987652144557******87555444332.445566655543...33333333313467899999**********84444459**********************************999999988862568899988887 PP

>> TIGR03522  GldA_ABC_ATP: gliding motility-associated ABC transporter ATP-binding subunit GldA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.7   0.0   2.7e-16   1.8e-14      15     189 ..     724     906 ..     713     925 .. 0.82

  Alignments for each domain:
  == domain 1    score: 51.7 bits;  conditional E-value: 2.7e-16
    TIGR03522  15 qkaldevsfeaekGeivGflGPnGaGkstlmkiltg..ylkadsGsvavagedvlknslevrkniGylPehnPlyldlyvreylefsaaly...klkgrklkkrveelielvGlkaeqhkkiga.....lskGyrqrvGlakallhdPkvlildePttGldPnqlveirevikeiakdktvilst 189
                   k+++ v+ +++   ++ ++G  GaGk++l+  l g  +   ++G+v ++g+++  +s      iG++P+ + +y +l vre + f ++     + ++ ++ +  +e i++ Gl++ +   +g+     +s G ++rv +   l+ +P++l ldePt+Gld    + + + ++++ ++  v + +
  MMETSP1061-20121228|47036_1 724 VKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGraHYGETTGTVYINGHKADIES--HMDCIGFVPQDDIVYAELTVRENFIFAGKFRlprGTSDAEISEYADETIANLGLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVS 906
                  46899******9999******************98733567899*******9875554..4579***********************9985333778888999999*********999988876222226889****************************998777777777776665555444 PP

>> TIGR01257  rim_protein: rim ABC transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   8.7e-16   5.8e-14     930    1113 ..     709     904 ..     678     926 .. 0.57

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 8.7e-16
    TIGR01257  930 cvknlvkifepsgrpavdrlnit...fyenqitaflghngagktttlsiltgl..lpptsgtvlvggk..dietnldavrqslgmcpqhnilfhhltvaehilfyaql...kgrsweeaqlemeamledtglhhkrneea.....qdlsgglqrklsvaiafvgdakvvvldeptsgvdpysrrsiwdll..lkyrsgrti 1113
                   c k+l      +gr  v  +n     +  + +ta++g  gagkt+ l  l g      t+gtv + g+  die+ +d+    +g++pq +i++  ltv e ++f  ++   +g s  e     +  + + gl    n        + +sgg ++++ + + ++    ++ ldeptsg+d  s   +   l  l  + g t+
  MMETSP1061-20121228|47036_1  709 CFKDLCLS-VNIGRQKVKVVNTVtgrIRGKTMTALMGGSGAGKTSLLNALCGRahYGETTGTVYINGHkaDIESHMDC----IGFVPQDDIVYAELTVRENFIFAGKFrlpRGTSDAEISEYADETIANLGLSRVANSPVgdvkrRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLnnLVEKNGVTV 904 
                   55555432.345565555555431213455667777777777777777776641134666777776642355555554....46677777777777777777776655222355555555555556666666666665431111134567777777777777777777777777777776665444433311223344444 PP

>> TIGR01846  type_I_sec_HlyB: type I secretion system ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   1.7e-14   1.2e-12     469     651 ..     723     910 ..     709     935 .. 0.79

  Alignments for each domain:
  == domain 1    score: 44.8 bits;  conditional E-value: 1.7e-14
    TIGR01846 469 spevlsnlsldikaGeviGivGpsGsGkst.ltkllqrl.yvPekGrvlvdgvdlaladPawlrrqvgvvlqenvlfsr.sirdniala.k...P.aiseekviaaaklaGahdfiselkqGyetevge.kGaalsGGqrqrialaralvanPrilildeatsaldyeseavimrnlreick..grtviiiahr 651
                  + +v++ ++  i++ ++  ++G sG+Gk+  l  l  r  y   +G v ++g+    ad  +    +g v q+++++   ++r+n   a k   P + s++++ + a  + a+     l +  +  vg+ k   +sGG ++r+ +   l+a+P il lde ts ld+ s  ++m+ l+++ +  g tv+++ h+
  MMETSP1061-20121228|47036_1 723 KVKVVNTVTGRIRGKTMTALMGGSGAGKTSlLNALCGRAhYGETTGTVYINGHK---ADIESHMDCIGFVPQDDIVYAElTVRENFIFAgKfrlPrGTSDAEISEYADETIANLG---LSRVANSPVGDvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEknGVTVVSVIHQ 910
                  5689999999******************76156788886256678*******96...677788899*********997548****766514222213444555555554444444...45566666665345568********************************************975237899999995 PP

>> TIGR02770  nickel_nikD: nickel import ATP-binding protein NikD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.5   0.1   7.6e-14   5.1e-12       2     185 ..     727     910 ..     726     928 .. 0.83

  Alignments for each domain:
  == domain 1    score: 43.5 bits;  conditional E-value: 7.6e-14
    TIGR02770   2 vqdvnlslkrgkvlalvGesGsGksltalailglldkeltktsGeilldgkelaalalrgreialilqnPrsafnPlltikeqllet..lkalekls.kqakelivealeavgLeeaee..vlkkypfelsGGmlqRvmialallleaplliaDePttdlDvvvqaevLklleelrekrglgillithD 185
                  v+ v   ++   ++al+G sG+Gk+    a+ g  +    +t+G ++++g++  +++     i+++ q+ +      lt++e+++ +   +  + +s ++  e + e++ + gL+ +++  v +     +sGG  +Rv i l l++++++l+ DePt+ lD+ +++ v+k l++l+ek+g++++ + h 
  MMETSP1061-20121228|47036_1 727 VNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAH--YGETTGTVYINGHKA-DIESHMDCIGFVPQDDIV--YAELTVRENFIFAgkFRLPRGTSdAEISEYADETIANLGLSRVANspVGDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQ 910
                  5666667888899************99999999766..7899********985.556666778888888764..34467777776551144444455467778999999999*9987654488999999******************************************************999995 PP

>> TIGR01277  thiQ: thiamine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.6   0.0   3.9e-14   2.6e-12      26     193 ..     739     915 ..     728     932 .. 0.81

  Alignments for each domain:
  == domain 1    score: 44.6 bits;  conditional E-value: 3.9e-14
    TIGR01277  26 rvailGesGaGkstllnliaGfle..pasGeikvndkdhtrsapyerpvsmlfqennlfahltvrqniglGlkpgl...klnavqkekvedvarqvGiadylerlpee.....lsGGqrqrvalarclvrekpillldepfsaldpklreemlalvkkladekkltlllvthslsdaa 193
                    a++G sGaGk++lln + G  +   ++G++ +n+++      +   +  + q++ ++a ltvr+n  +  k  l     +a+  e  ++   ++G++   +   ++     +sGG+++rv +   l+ +  il+ldep s ld      ++  +++l++++ +t++ v h++ + +
  MMETSP1061-20121228|47036_1 739 MTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHKAD-IESHMDCIGFVPQDDIVYAELTVRENFIFAGKFRLprgTSDAEISEYADETIANLGLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQPRKFI 915
                  579*****************9765226889*****98765.55667799******************98876655511155677777777888888988766543322222238********************************9999999999*****************98755 PP

>> TIGR01192  chvA: glucan exporter ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.2   0.0   2.7e-13   1.8e-11     335     524 ..     708     904 ..     684     917 .. 0.75

  Alignments for each domain:
  == domain 1    score: 41.2 bits;  conditional E-value: 2.7e-13
    TIGR01192 335 vefrdisfefanssqgvrdv...sfeakagqtvaivgptgagkttlinll.qrv.ydpksgqilidgvdiatvtreslrksiatvfqdagl.lnrsiren.irlgr....edatdeevveaakaaaasdfiekrlkgydtlvgergnrlsggerqrlaiarailknapilvldeatsaldvetearvkdaidal.rknrttf 524
                  + f+d+       +q v+ v   + +++     a++g +gagkt+l+n l  r  y  ++g + i+g +    + es   +i  v qd  +  + ++ren i  g+     +++d+e+ e a+ + a+  ++   ++    v  rg  +sgge++r+ i   ++    il lde ts ld  +   v ++++ l +kn  t 
  MMETSP1061-20121228|47036_1 708 LCFKDLCLSVNIGRQKVKVVntvTGRIRGKTMTALMGGSGAGKTSLLNALcGRAhYGETTGTVYINGHKA---DIESHMDCIGFVPQDDIVyAELTVRENfIFAGKfrlpRGTSDAEISEYADETIANLGLSRVANSPVGDVKRRG--VSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLvEKNGVTV 904
                  66777777766666665544100444554455699*************874454278899*******764...4589999******987661578****944557644445789******99999998777777777777888887..7*********************************99999888876515665554 PP

>> TIGR03797  NHLM_micro_ABC2: NHLM bacteriocin system ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.4   0.1   8.4e-13   5.7e-11     466     634 ..     724     896 ..     715     910 .. 0.81

  Alignments for each domain:
  == domain 1    score: 39.4 bits;  conditional E-value: 8.4e-13
    TIGR03797 466 plvLddvslkiepGefvaivGaSGsGKStllrlLLgFek..PesGsvlyDGqdlekldvqavRrqlGvVLQngrllsg.sileniaggasltldeaweaarmagleeD.ikamPmglhTvise.....gggtlSGGQrQRlliAralvrkPrillfDEATSALDNrtQaiVseslekl 634
                   +v++ v+ +i+  +  a++G SG+GK +ll  L g  +   ++G+v+  G+   k d+++    +G V Q+  + ++ ++ en + + ++ l +  + a+ +  +++ i ++  gl  v +         ++SGG ++R+ i   l+ kP il++DE TS LD  +  +V++sl++l
  MMETSP1061-20121228|47036_1 724 VKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGH---KADIESHMDCIGFVPQDDIVYAElTVRENFIFAGKFRLPRGTSDAEISEYADEtIANL--GLSRVANSpvgdvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNL 896
                  5788899999999999********************77622578*******7...5789999999******999887647889999998888888888888877664416665..665555441111134689******************************************998 PP

>> TIGR02314  ABC_MetN: D-methionine ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   8.4e-13   5.7e-11      12     200 ..     718     910 ..     710     931 .. 0.84

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 8.4e-13
    TIGR02314  12 dqgdkkikaldnvslfvpkgqifgvigasgagkstlir..cvnllekptsgavivdgkdlttlsnaelvkarrqigmifqhfnllssrtvfgnvalp..lel.entpkekikrkvtellalvglsdkkds.....ypsnlsggqkqrvaiaralasepkvllcdeatsaldpattqsilellkeinrrlgltillithe 200
                  + g +k+k ++ v+  +   ++  ++g sgagk++l+   c       t g+v ++g++      a++      ig++ q   + +  tv +n  +   + l  +t+  +i +  +e +a +gls   +s         +sgg+k+rv i   l ++p +l+ de ts ld +++  +++ l ++  + g+t++ + h+
  MMETSP1061-20121228|47036_1 718 NIGRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNalCGRAHYGETTGTVYINGHK------ADIESHMDCIGFVPQDDIVYAELTVRENFIFAgkFRLpRGTSDAEISEYADETIANLGLSRVANSpvgdvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQ 910
                  56889999*********999****************97446677778899999999975......66666677788888888888888888887655114443589999***************9988761111144568*****************************************************999986 PP

>> TIGR02769  nickel_nikE: nickel import ATP-binding protein NikE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.5   6.1e-12   4.1e-10      19     212 ..     719     912 ..     707     937 .. 0.80

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 6.1e-12
    TIGR02769  19 gkkqrkavldnvslsleeGetvallGrsGaGkstlarlllGlek..PakGevsfrGqdlakldrkqrkafrrdvqlvfqdsisavnprksvre..iigePlrhltsldeserkariaellelvelr....sevldklPrqlsGGqlqriniaralavePklivldeavsnldlvlqasilellkklkqefGlaylfithdlr 212
                    +q+ +v++ v   ++     al+G sGaGk+ l   l G ++   + G+v  +G++      ++  +    + +v qd i  v +  +vre  i +  +r     +++e  + + e +  ++l+    s v d + r +sGG  +r+ni   l ++P ++ lde  s ld    + +++ l++l ++ G++++ + h  r
  MMETSP1061-20121228|47036_1 719 IGRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGHK------ADIESHMDCIGFVPQDDI--VYAELTVREnfIFAGKFRLPRGTSDAEISEYADETIANLGLSrvanSPVGDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQPR 912
                  56899999*****9999888889******************99733578999999974......333444556899999987..55666665433789999999999999999999999999998622213445677889*******************************************************9999754 PP

>> TIGR03719  ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   0.0      0.17        11     340     374 ..     729     763 ..     710     815 .. 0.71
   2 !   35.3   0.0   1.6e-11   1.1e-09     152     241 ..     841     935 ..     827     939 .. 0.79

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.17
    TIGR03719 340 dlsfklpkggivGviGpnGaGkstlfklitgkekp 374
                   ++ ++   ++  ++G  GaGk+ l++ + g+ + 
  MMETSP1061-20121228|47036_1 729 TVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHY 763
                  55556666677788999999999999999887653 PP

  == domain 2    score: 35.3 bits;  conditional E-value: 1.6e-11
    TIGR03719 152 lpeedakveklsGGekrrvalcrlllekPdlllldePtnhldaesvaWlekfl....keykGtvvavthd.ryfldnvaeWileldrGegipykg 241
                   p  d k   +sGGek+rv +   l+ kP +l+ldePt  lda s   + k l    ++   tvv v h  r f+ +  + ++ l  G ++ y+g
  MMETSP1061-20121228|47036_1 841 SPVGDVKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLnnlvEKNGVTVVSVIHQpRKFIFDLFDSLILLGVGGQMMYHG 935
                  5778899999**********************************976655554000045556999999965888877777766677776666665 PP

>> TIGR01186  proV: glycine betaine/L-proline transport ATP binding subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   1.6e-11   1.1e-09       7     189 ..     725     910 ..     720     932 .. 0.84

  Alignments for each domain:
  == domain 1    score: 35.8 bits;  conditional E-value: 1.6e-11
    TIGR01186   7 lgvndvdleieeGeiiviiGlsGsGkstlvrlln.rl.iePtaGkilidGediaeisdaelrevrrkkiamviqkialfPhmtildnislglel...lkideqerkekalealklvdleeyedr.....yPdelsGGmqqrvGlaralaaePdlllmdeafsaldPlirdelqdelvklqkklqktivfithd 189
                  + vn v   i    +  ++G sG+Gk++l+  l  r     t+G ++i+G++    s+ +        i++v q+  ++   t+ +n  ++ ++    + ++ e  e a e++  ++l   +++         +sGG ++rv +   l a+P +l++de+ s ld      + + l +l +k   t+v + h 
  MMETSP1061-20121228|47036_1 725 KVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCgRAhYGETTGTVYINGHKADIESHMDC-------IGFVPQDDIVYAELTVRENFIFAGKFrlpRGTSDAEISEYADETIANLGLSRVANSpvgdvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQ 910
                  56788888888888999***********998775253256899*******98655555555.......**********************98873345899999***********9998877651111145679********************************999999999*************99996 PP

>> TIGR03005  ectoine_ehuA: ectoine/hydroxyectoine ABC transporter, ATP-binding protein EhuA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.9   0.1   5.8e-11   3.9e-09      26     220 ..     737     925 ..     717     940 .. 0.75

  Alignments for each domain:
  == domain 1    score: 33.9 bits;  conditional E-value: 5.8e-11
    TIGR03005  26 GekvaliGpsGsGkstilrilmtletideGsikvegeqlyhmkgrkGklvpadekhlrkvrekiGmvfqsfnlfphktvldnvteapv..lvkGvaraeaekravelldmvGladkada.....lpaqlsGGqkqrvaiaralalrpkvllfdevtsaldpelveevlnvlrrlasetdltmllvthem.gfarefadrvlff 220
                      al+G sG+Gk+++l  l    +  e +  v      +++g+k ++    e h+    + iG+v q   ++   tv +n + a    l +G + ae  + a e +  +Gl+  a++         +sGG+k+rv i   l  +p +l++de+ts ld      v++ l +l +++ +t++ v h+  +f  ++ d ++++
  MMETSP1061-20121228|47036_1 737 KTMTALMGGSGAGKTSLLNALCGRAHYGETTGTV------YINGHKADI----ESHM----DCIGFVPQDDIVYAELTVRENFIFAGKfrLPRGTSDAEISEYADETIANLGLSRVANSpvgdvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQPrKFIFDLFDSLILL 925
                  4555677777777777777776655554433333......344444444....4454....679******************999975224589999*9999**9999999998877651111134468**********************************************************9525888888877665 PP

>> TIGR02323  CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.0   0.1     0.011      0.77      28      54 ..     738     764 ..     714     784 .. 0.72
   2 !   22.6   0.0   2.1e-07   1.4e-05     134     197 ..     843     909 ..     823     938 .. 0.84

  Alignments for each domain:
  == domain 1    score: 7.0 bits;  conditional E-value: 0.011
    TIGR02323  28 evlgivGesGsGkstllkalaarllad 54 
                   + +++G sG+Gk++ll+al++r    
  MMETSP1061-20121228|47036_1 738 TMTALMGGSGAGKTSLLNALCGRAHYG 764
                  456899**************9976432 PP

  == domain 2    score: 22.6 bits;  conditional E-value: 2.1e-07
    TIGR02323 134 aarikpaafsGGmqqrlqiarnlvtrprlvfm.eptGGlvsvqarll..llrglvrelglaviivth 197
                   + +k +  sGG ++r++i  +l+++p ++f+ ept Gl +  a l+   l +lv + g++v+ v h
  MMETSP1061-20121228|47036_1 843 VGDVKRRGVSGGEKKRVNIGLELMAKPSILFLdEPTSGLDASSALLVmkSLNNLVEKNGVTVVSVIH 909
                  566788999******************************77777776456899**********9999 PP

>> TIGR03415  ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.3   0.0       2.6   1.7e+02      46      86 ..     493     534 ..     474     565 .. 0.72
   2 !   26.6   0.0   8.6e-09   5.8e-07      38     221 ..     725     907 ..     717     915 .. 0.78

  Alignments for each domain:
  == domain 1    score: -1.3 bits;  conditional E-value: 2.6
    TIGR03415  46 dveeGeilvlmGlsGsGkssllravnglnpvs.rGkvlvkde 86 
                  d++  e+ v++Gls      ++r +n l++ +  Gkv+v+  
  MMETSP1061-20121228|47036_1 493 DLTFDELNVILGLSKKELNEFIRRMNELATGApSGKVSVTRP 534
                  55667999********************98543789988765 PP

  == domain 2    score: 26.6 bits;  conditional E-value: 8.6e-09
    TIGR03415  38 lgvadasldveeGeilvlmGlsGsGkssllravnglnpvsrGkvlvkdedkevdvakcdeatlrklrtkrvsmvfqkfallPWrtveenvafGlel...sGvakaerrkrveeqlelvglaeWadkkvge.....lsGGmqqrvGlarafateadillmdePfsaldPliraklqdellelqkklkktivfv 221
                    v+ ++ +++   ++ lmG sG+Gk+sll a+ g +         +++  +++  k+d ++     ++ +  v q   +   +tv+en  f   +   +G ++ae  + ++e +  +gl+  a+  vg+     +sGG ++rv +   +  +  il++deP s ld      +   l +l +k   t+v v
  MMETSP1061-20121228|47036_1 725 KVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHY-----GETTGTVYINGHKADIES----HMDCIGFVPQDDIVYAELTVRENFIFAGKFrlpRGTSDAEISEYADETIANLGLSRVANSPVGDvkrrgVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSV 907
                  4577788888888999**************999875544.....334555566666666554....5789********************9987663356*********************999876655222227*******************************7655555555555555555555555 PP

>> TIGR00630  uvra: excinuclease ABC subunit A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   0.0     0.025       1.7     618     683 ..     722     785 ..     711     798 .. 0.77
   2 !   18.0   0.0   2.1e-06   0.00014     827     890 ..     849     910 ..     820     932 .. 0.80

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.025
    TIGR00630 618 akennlkdidvsiplglltvitGvsgsGkstLindiLvkaleerlnkaktekgkvkeieGlekldk 683
                   k + ++ ++ +i+ +++t++ G sg+Gk +L+n +  +a + + +++ + +g+  +ie   ++d 
  MMETSP1061-20121228|47036_1 722 QKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHYGETTGTVYINGHKADIES--HMDC 785
                  556667788999999*******************99888888777777777777777775..5555 PP

  == domain 2    score: 18.0 bits;  conditional E-value: 2.1e-06
    TIGR00630 827 ttLsGGeaqrvkLakeLskrstgktlyilDePttGLhfdDikkLlevlqrlvd.kGntvvviehn 890
                    +sGGe +rv +  eL ++     +  lDePt GL       +++ l++lv+ +G tvv + h 
  MMETSP1061-20121228|47036_1 849 RGVSGGEKKRVNIGLELMAK---PSILFLDEPTSGLDASSALLVMKSLNNLVEkNGVTVVSVIHQ 910
                  468**************987...57889***********************97369999988775 PP

>> TIGR00957  MRP_assoc_pro: multi drug resistance-associated protein (MRP)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.9   0.0   3.3e-07   2.2e-05     645     800 ..     718     890 ..     666    1021 .. 0.76

  Alignments for each domain:
  == domain 1    score: 19.9 bits;  conditional E-value: 3.3e-07
    TIGR00957 645 twardepptlngltlsipegalvavvgqvgcgkssllsallaemd..kvegkvalkg..........svayvpqqawiq.ndslrenilfgkaleekyykavle....acalladleilpsgdrteige.kgvnlsggqkqrvslaravysdadiyllddplsavdahvakhif 800
                     r++   +n++t +i   ++ a++g  g gk+sll al +  +     g v ++g           + +vpq+  +  + ++ren +f  +++ ++  +  e    a   +a+l +     ++ +g+ k   +sgg+k+rv +   + ++  i +ld+p s +da  a  ++
  MMETSP1061-20121228|47036_1 718 NIGRQKVKVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHygETTGTVYINGhkadieshmdCIGFVPQDDIVYaELTVRENFIFAGKFRLPRGTSDAEiseyADETIANLGLSRVA-NSPVGDvKRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVM 890
                  4567788889999999*999********************9765411667889888833333322223679***988762679*******99888777666554111123345666554443.344554366668*******************************98775554 PP

>> TIGR00954  3a01203: peroxysomal long chain fatty acyl transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.2   0.0   8.7e-06   0.00059     468     640 ..     726     911 ..     712     930 .. 0.77

  Alignments for each domain:
  == domain 1    score: 16.2 bits;  conditional E-value: 8.7e-06
    TIGR00954 468 lieeLsfevksGnhlLiiGPnGcGKsslfRilgelWPvyg..........glltkp.eegklFyvPqrPYmslg.tlRdqiiYPdssedfkerglsdkdLeqiLeevkLedllereggwdavqdWkd.vLsgGekqRiamARlfyHkPkfavLDEctsAv....svdvEdklyelakevgitllsvshrk 640
                  +++ ++ +++  +   ++G  G GK sl   l +    yg           +  ++ +   + +vPq   +    t+R+  i+  +      rg sd+++ ++ +e  + +l    ++ + v d k   +sgGek+R+++   +  kP    LDE ts +    ++ v + l +l+ + g+t++sv h++
  MMETSP1061-20121228|47036_1 726 VVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCGRA-HYGettgtvyingHKADIEsHMDCIGFVPQDDIVYAElTVRENFIFAGKFR--LPRGTSDAEISEYADET-IANLGLSRVANSPVGDVKRrGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLdassALLVMKSLNNLVEKNGVTVVSVIHQP 911
                  666667777766666788999999999999998753.33345656666632222330334589*****9998888********86654..689**********9986.5566556678899999886269***************************976332245688999999***********9987 PP

>> TIGR01271  CFTR_protein: cystic fibrosis transmembrane conductor regulator (CFTR)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.1e-05    0.0021    1233    1401 ..     725     898 ..     693     914 .. 0.75

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.1e-05
    TIGR01271 1233 avlqdlsfsveagqrvgllgrtgsgkstllsall...rllstegeiqidgvswnsvtlqkwrkafgvipqkvfilsg.tfrknldpyeqy......sdeeiwkvaeevglksvieqfpdkldfvlvdggyvlsnghkqlmclarsilskakillldepsafldpvtlqiirktlkqafs 1401
                    v++ ++  + +     l+g +g+gk++ll al       +t g + i+g       ++    ++g +pq  ++++  t r n+    ++      sd ei   a+e   +  + +  +     ++  g  +s g k+ + +   +++k  il+ldep++ ld  +  ++ k+l +   
  MMETSP1061-20121228|47036_1  725 KVVNTVTGRIRGKTMTALMGGSGAGKTSLLNALCgraHYGETTGTVYINGHKA---DIESHMDCIGFVPQDDIVYAElTVRENFIFAGKFrlprgtSDAEISEYADETIANLGLSRVANSPVGDVKRRG--VSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVE 898 
                   566777777888888899**************983223457999999999765...577888999****987777643888887665554444444999**9999996555545554444333344444..58899999************************9999999998877554 PP

>> TIGR00157  TIGR00157: ribosome small subunit-dependent GTPase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0   6.2e-05    0.0042      58     147 ..     669     762 ..     664     771 .. 0.67

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 6.2e-05
    TIGR00157  58 ldrlLvvaeakniepiivlnkkdlleeedaekeqleelknlgYkvllvsvk....neegleelkeklkkr.isvfaGqSGVGKSSLiNlldpevk 147
                  ++r L +a+  ++   i+l   ++++++ +e  + +   +l +k l +sv+    + + +++++  ++ + ++ ++G SG GK SL+N+l ++++
  MMETSP1061-20121228|47036_1 669 ISRELFTAHYPELLMKIMLSEEEDINDDCTE-LMDSPGVDLCFKDLCLSVNigrqKVKVVNTVTGRIRGKtMTALMGGSGAGKTSLLNALCGRAH 762
                  6666667777777777777777777776666.444444566666666665411104455666666666552689****************98765 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   0.00017     0.011      34      74 ..     733     774 ..     712     797 .. 0.71

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 0.00017
    TIGR03420  34 eakaerllylwGesgsGksHLLqAacaaaeeagk.saiylpl 74 
                  + ++++++ l+G sg Gk+ LL+A+c +a+  +   ++y++ 
  MMETSP1061-20121228|47036_1 733 RIRGKTMTALMGGSGAGKTSLLNALCGRAHYGETtGTVYING 774
                  357788999*****************9987554313556554 PP

>> TIGR03819  heli_sec_ATPase: helicase/secretion neighborhood ATPase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2   0.00042     0.028     170     206 ..     729     765 ..     709     773 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.00042
    TIGR03819 170 lleaivaarlallvsGgtGsGkttLLsalLalvaede 206
                   ++  ++ ++   + Gg+G+Gkt+LL+al +++++ e
  MMETSP1061-20121228|47036_1 729 TVTGRIRGKTMTALMGGSGAGKTSLLNALCGRAHYGE 765
                  444457788888999***************9998755 PP

>> TIGR01194  cyc_pep_trnsptr: cyclic peptide transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0007     0.047     364     545 ..     734     928 ..     726     932 .. 0.76

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0007
    TIGR01194 364 iasGelvyivGenGcGkstliklllG..lyipqeGellldGeavsdesrddyrdlf...savfadyylfddlvq......pdekkqasl.dqattylsrleledkvkvedlnystttdlstGqrkrlalvnayleerpvllldewaadqdpafkrvfyeellpdlkrrGktilvishddry..feladrlikladG 545
                  i    +  ++G+ G Gk++l+  l+G   y    G + ++G+    es  d   +      v+a+  + ++++       p    +a + + a + + +l+l    +   ++      +s G++kr+ +    + +  +l lde ++  d +   +  + l   + ++G t++ + h+ r   f+l d li l  G
  MMETSP1061-20121228|47036_1 734 IRGKTMTALMGGSGAGKTSLLNALCGraHYGETTGTVYINGHKADIESHMDCIGFVpqdDIVYAELTVRENFIFagkfrlPRGTSDAEIsEYADETIANLGLSRVANSPVGDV-KRRGVSGGEKKRVNIGLELMAKPSILFLDEPTSGLDASSALLVMKSLNNLVEKNGVTVVSVIHQPRKfiFDLFDSLILLGVG 928
                  5555667789***************944589999**************99977665222468888777777765111111333333333145777788999976555444444.4889*********999998888899************999999999999999*******99999885237999999998766 PP

>> TIGR00618  sbcc: exonuclease SbcC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.9   0.3     0.002      0.13      27      55 ..     737     766 ..     720     776 .. 0.81

  Alignments for each domain:
  == domain 1    score: 7.9 bits;  conditional E-value: 0.002
    TIGR00618  27 lklfvicGktGaGKtsLldAIt.yALYgkv 55 
                    + +  G  GaGKtsLl+A +  A Yg++
  MMETSP1061-20121228|47036_1 737 KTMTALMGGSGAGKTSLLNALCgRAHYGET 766
                  456788999************955888884 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1462 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       260  (0.0633837); expected 82.0 (0.02)
Passed bias filter:                      199  (0.0485129); expected 82.0 (0.02)
Passed Vit filter:                        90  (0.0219405); expected 4.1 (0.001)
Passed Fwd filter:                        61  (0.0148708); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              61  [number of targets reported over threshold]
# CPU time: 1.64u 0.18s 00:00:01.81 Elapsed: 00:00:01.04
# Mc/sec: 1855.46
//
Query:       MMETSP1061-20121228|47054_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1061-20121228|47052_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       173  (0.0421745); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.38
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|47072_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.33
# Mc/sec: 347.97
//
Query:       MMETSP1061-20121228|47074_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00089   16.5   0.0    0.00091   16.5   0.0    1.0  1  TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase
  ------ inclusion threshold ------
      0.018   11.9   0.0      0.018   11.8   0.0    1.0  1  TIGR04048 nitrile_sll0784: putative nitrilase, sll0784 family


Domain annotation for each model (and alignments):
>> TIGR03381  agmatine_aguB: N-carbamoylputrescine amidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   4.4e-07   0.00091     222     273 ..      12      62 ..       3      63 .] 0.87

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 4.4e-07
    TIGR03381 222 ltfyGssfiadetGelvaeadrseeavlvaefdldeiakeraawGlfrdrrp 273
                   t +G+s + + +G++va++d+  e+v+va++dl ++a+ r+ + +   rr+
  MMETSP1061-20121228|47074_1  12 YTAWGHSTVVSPWGDVVATTDE-TEGVVVADLDLVRLAEVRSGIPIGNQRRT 62 
                  5678*************99887.689***************99988888886 PP

>> TIGR04048  nitrile_sll0784: putative nitrilase, sll0784 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.0   8.9e-06     0.018     241     272 ..      17      47 ..       5      56 .. 0.85

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 8.9e-06
    TIGR04048 241 ytaivspegkllaepltegeglviadldlsli 272
                  ++++vsp g  +a+  +e eg+v+adldl  +
  MMETSP1061-20121228|47074_1  17 HSTVVSPWGDVVAT-TDETEGVVVADLDLVRL 47 
                  7889*****98876.699**********9654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 332.61
//
Query:       MMETSP1061-20121228|47071_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.6e-06   25.0   0.2      7e-05   21.2   0.0    2.3  2  TIGR01444 fkbM_fam: methyltransferase, FkbM family


Domain annotation for each model (and alignments):
>> TIGR01444  fkbM_fam: methyltransferase, FkbM family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0     0.018        73       2      19 ..      91     108 ..      90     125 .. 0.76
   2 !   21.2   0.0   1.7e-08     7e-05     102     128 ..     284     310 ..     191     320 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.018
    TIGR01444   2 viDiGAniGdvslvfara 19 
                  +iD G niGd+  +f  +
  MMETSP1061-20121228|47071_1  91 FIDLGTNIGDSIGYFIDN 108
                  79********99998765 PP

  == domain 2    score: 21.2 bits;  conditional E-value: 1.7e-08
    TIGR01444 102 eeaglekvdllKiDvEGaEleVLrgl.a 128
                  +e++   + ++K+DvEGaE++VL+++ a
  MMETSP1061-20121228|47071_1 284 DEQS-GGILIVKMDVEGAEYQVLKEVaA 310
                  4444.56889**************9844 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 2034.83
//
Query:       MMETSP1061-20121228|47079_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 521.01
//
Query:       MMETSP1061-20121228|47069_1  [L=203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-38  129.3   0.0    4.2e-38  128.6   0.0    1.3  1  TIGR02227 sigpep_I_bact: signal peptidase I
    2.8e-10   37.8   0.0    3.5e-10   37.5   0.0    1.2  1  TIGR02771 TraF_Ti: conjugative transfer signal peptidase TraF
    1.9e-05   22.9   0.1      0.063   11.6   0.0    3.0  3  TIGR02754 sod_Ni_protease: nickel-type superoxide dismutase maturation protease
     0.0005   17.8   0.0     0.0013   16.5   0.0    1.6  2  TIGR02228 sigpep_I_arch: signal peptidase I


Domain annotation for each model (and alignments):
>> TIGR02227  sigpep_I_bact: signal peptidase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.6   0.0   4.1e-41   4.2e-38       3     160 ..      28     193 ..      26     194 .. 0.94

  Alignments for each domain:
  == domain 1    score: 128.6 bits;  conditional E-value: 4.1e-41
    TIGR02227   3 llilialllallirtfvfelvkvpgesMeptlkegdlilvnklaygtaepkrgDivvfkapeeekk...............eyikRviglpGDkveirdgklyingkkveesylkeekskdteelneadtkvkVPegkyfvLGDnrdnslDSRsiGlvkkdeivGkvsivllp 160
                  ++ +++l +all+r+ ++e+  +p+ sM pt++ gd++ v+k++++++ + r+++vvf+ p++ ++                +ikR+++++GD+ve+++gkly+ng++ ee++++e+++ +          v VP+++++vLGDnr++slD   +G+ +k++++G++++v++p
  MMETSP1061-20121228|47069_1  28 KTYFVSLGIALLLRFTIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRIKPFYRQEVVVFNPPQSFRDimvgkygqdvsrsreALIKRIVAIEGDEVEVKQGKLYVNGDEQEEPFTAEDAEYEFGP-------VVVPPDNVLVLGDNRNHSLDGHIWGFLPKQNVIGRAVFVYWP 193
                  678999******************************************************999999*********************************************9888775544444.......45***************************************8 PP

>> TIGR02771  TraF_Ti: conjugative transfer signal peptidase TraF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.5   0.0   3.4e-13   3.5e-10      42     166 ..      72     188 ..      34     192 .. 0.84

  Alignments for each domain:
  == domain 1    score: 37.5 bits;  conditional E-value: 3.4e-13
    TIGR02771  42 tsskevergkyvvfcppdnavleealeRgylreglCkGgfepllKrvlalkGdrvtvradvvavngkllpvskaeavdsegralaplaegvvpkg.lllvsdtsptSFDsRYfGlisreqvkgvvk 166
                  +  k+  r ++vvf pp++    +  +    ++++ +   e l+Kr++a++Gd+v+v++ ++ vng + + +++ +  +      ++ + vvp+  +l++ d+  +S D+  +G +++++v+g+++
  MMETSP1061-20121228|47069_1  72 KRIKPFYRQEVVVFNPPQSFRDIMVGKY---GQDV-SRSREALIKRIVAIEGDEVEVKQGKLYVNGDEQEEPFTAEDAE-----YEFGPVVVPPDnVLVLGDNRNHSLDGHIWGFLPKQNVIGRAV 188
                  56678889999****9988774344444...5576.556799************************8888777765544.....678888888877999************************986 PP

>> TIGR02754  sod_Ni_protease: nickel-type superoxide dismutase maturation protease
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.1   0.0    0.0016       1.6       7      42 ..      54      88 ..      50      99 .. 0.71
   2 ?    0.3   0.0      0.21   2.1e+02      46      66 ..     108     128 ..     102     138 .. 0.77
   3 !   11.6   0.0   6.1e-05     0.063      59      89 ..     158     188 ..     152     189 .. 0.91

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 0.0016
    TIGR02754  7 smsPtlkpedrvlvqPllkiarvkeaGevvvvrHPl 42
                 sm+Pt + +d++ v+ ++k  +     e vvv+ P 
  MMETSP1061-20121228|47069_1 54 SMYPTFEVGDQLAVEKVTKRIKPFYRQE-VVVFNPP 88
                 9**************7777655444334.4455554 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.21
    TIGR02754  46 vliiKrlaavddnglellgdn 66 
                    +iKr+ a++ + +e+ +++
  MMETSP1061-20121228|47069_1 108 EALIKRIVAIEGDEVEVKQGK 128
                  5699***99999988887766 PP

  == domain 3    score: 11.6 bits;  conditional E-value: 6.1e-05
    TIGR02754  59 glellgdnpkastdsrklGlvskelllGkvl 89 
                   + +lgdn + s d + +G ++k+ ++G+++
  MMETSP1061-20121228|47069_1 158 NVLVLGDNRNHSLDGHIWGFLPKQNVIGRAV 188
                  5679************************986 PP

>> TIGR02228  sigpep_I_arch: signal peptidase I
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   1.2e-06    0.0013      35      73 ..      45      89 ..      28      99 .. 0.76
   2 ?   -2.9   0.0       1.2   1.2e+03     108     120 ..     177     189 ..     163     193 .. 0.68

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 1.2e-06
    TIGR02228 35 v....vlSgSMePtfntGdlvlveg..vdpedikvGdvivyksee 73
                 +    + S SM+Ptf++Gd ++ve+  ++ +   + +v+v++ ++
  MMETSP1061-20121228|47069_1 45 IepryIPSLSMYPTFEVGDQLAVEKvtKRIKPFYRQEVVVFNPPQ 89
                 24455789***************9954556777788999998766 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.2
    TIGR02228 108 pvpsenvigkvlg 120
                  ++p++nvig+  +
  MMETSP1061-20121228|47069_1 177 FLPKQNVIGRAVF 189
                  5788999998775 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1071.75
//
Query:       MMETSP1061-20121228|47093_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 326.83
//
Query:       MMETSP1061-20121228|47094_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 468.56
//
Query:       MMETSP1061-20121228|47103_1  [L=507]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      5e-15   52.3   0.0    6.9e-15   51.8   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
      5e-06   23.9   0.1    8.9e-06   23.1   0.1    1.3  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   51.8   0.0   3.4e-18   6.9e-15      81     186 ..     239     339 ..     235     348 .. 0.86

  Alignments for each domain:
  == domain 1    score: 51.8 bits;  conditional E-value: 3.4e-18
    TIGR03903  81 tgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLivleCLtGk 186
                    r+m+ +  al   h++Gvv RDLkPqni  sa+  ++  ++ DFG++  lp  +          +  +G+  Y aPe   + p    sD+Y+W ++  e L  +
  MMETSP1061-20121228|47103_1 239 KIRIMTEIASALDYIHAQGVVFRDLKPQNIGFSAE--KNSVQIFDFGLSRELPSLDTSIP--F-SMSGKVGTLRYMAPEVATNQPYNISSDVYSWAIVSYELLSLE 339
                  5799**************************98875..56789***********9987333..3.345579***************************999988655 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.1   0.1   4.3e-09   8.9e-06      76     138 ..     224     287 ..     211     294 .. 0.83

  Alignments for each domain:
  == domain 1    score: 23.1 bits;  conditional E-value: 4.3e-09
    TIGR03724  76 meyiegkklkdlleekelellkevGelvgklHkagivhgDlttsNiivk..ddklyliDfGLgkk 138
                  + + +++++++l  e + ++++e++ ++  +H +g+v+ Dl ++Ni ++  ++++ + DfGL++ 
  MMETSP1061-20121228|47103_1 224 ITHTNDQRIHTLYLE-KIRIMTEIASALDYIHAQGVVFRDLKPQNIGFSaeKNSVQIFDFGLSRE 287
                  556678888888877.569***************************9953378899******985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (507 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.15s 00:00:00.43 Elapsed: 00:00:00.31
# Mc/sec: 2158.66
//
Query:       MMETSP1061-20121228|47120_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 845.93
//
Query:       MMETSP1061-20121228|47146_1  [L=518]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (518 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.25
# Mc/sec: 2734.81
//
Query:       MMETSP1061-20121228|47161_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|47160_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 507.12
//
Query:       MMETSP1061-20121228|47165_1  [L=389]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (389 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       195  (0.0475378); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.22
# Mc/sec: 2333.81
//
Query:       MMETSP1061-20121228|47168_1  [L=685]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-54  181.8   1.7    4.1e-38  128.5   0.2    3.1  2  TIGR01408 Ube1: ubiquitin-activating enzyme E1
    8.7e-30  101.4   0.2    2.5e-16   57.5   0.0    2.4  2  TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
    4.6e-25   86.2   0.7    1.6e-12   45.2   0.0    2.8  3  TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB
    2.8e-12   44.8   0.0    9.1e-11   39.8   0.0    2.3  2  TIGR02354 thiF_fam2: thiamine biosynthesis protein ThiF
    1.1e-05   22.7   0.1      0.003   14.7   0.0    2.5  2  TIGR03736 PRTRC_ThiF: PRTRC system ThiF family protein
    0.00053   16.3   0.0    0.00097   15.5   0.0    1.4  1  TIGR01381 E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p


Domain annotation for each model (and alignments):
>> TIGR01408  Ube1: ubiquitin-activating enzyme E1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  128.5   0.2     6e-41   4.1e-38     407     622 ..      10     244 ..       5     303 .. 0.77
   2 !   44.5   0.0   1.5e-15     1e-12     789     871 ..     344     423 ..     309     440 .. 0.80

  Alignments for each domain:
  == domain 1    score: 128.5 bits;  conditional E-value: 6e-41
    TIGR01408 407 avfGaklqkkledlkvflvGaGaiGcellknlallGvatgkkGkitvtdddlieksnlnrqflfrprdigkaksevaasavavinprlkieayqnrv..gpete................ti.....fddefyeklsvvvnaldnvearlyvdsrclffekPllesGtlGtkgntqvvvPhl.tesygssrdPPekeiPlctlksfPaaiehtiawardkfegllekkpaevnkylssps 622
                    +G+++ +k++  +++ vGaG iGcellk++al G       ++ v d d i+ snlnrq+lfr +++g +k +va++ ++ + p l+i +  ++   g  ++                ++     f+  f ++ ++vvnaldnvear+ v++ cl+ + Pl+e+Gt G  g+  v+        y++     +k  P+ct++s P+   hti w+++ +  l++ k +e   y +   
  MMETSP1061-20121228|47168_1  10 KTVGKEMFRKIQTSNILCVGAGGIGCELLKDMALSGFR-----RVQVVDLDTIDVSNLNRQLLFRGQHVGMPKCTVACEVATGMVPPLTIPSNDEKTdgGNSSNdnpsdlpsvsyqahhgNVcdtskFNVPFIKEFDLVVNALDNVEARRRVNRLCLAADVPLIEAGTTGYLGQVTVIHKNSgVACYECTTQETQKVYPICTIRSTPSMPVHTIVWSKELYKLLFHSKLDESMLYEDPAG 244
                  578*******************************9985.....799***********************************9999999976665553221111111111111111111112222223888999***************************************99888866542578******************************************999877754433 PP

  == domain 2    score: 44.5 bits;  conditional E-value: 1.5e-15
    TIGR01408 789 idsneallsdlrlkplefekdddsnyhidfitaasnlraknysiepadrl.ktkfiaGkiiPaiatstavvsGlvalelvkvvd 871
                  + ++ ++ +d      ef+kddd    + f+taasnlr+  + iep   l  +k iaG iiPaiat+ a+ +Gl  l+ + ++ 
  MMETSP1061-20121228|47168_1 344 LREAAKTSTDEL--LEEFDKDDDL--AMRFVTAASNLRSSVFGIEPLQSLySAKGIAGNIIPAIATTNAICAGLQILQAFAILK 423
                  444444444433..3489999997..589*****************9986379*********************9998877764 PP

>> TIGR02356  adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.5   0.0   3.6e-19   2.5e-16      10      86 ..      11      87 ..       8     108 .. 0.89
   2 !   41.4   0.1   3.2e-14   2.2e-11     108     180 ..     136     207 ..     116     224 .. 0.87

  Alignments for each domain:
  == domain 1    score: 57.5 bits;  conditional E-value: 3.6e-19
    TIGR02356 10 eigeegqqklleskvliiGaGgLgsavaeylaaaGvgtiaivDdDevdlsNlqrqilfaeedvkrpKveaaaerlke 86
                  +g+e  +k++ s++l +GaGg+g++ ++ +a  G  ++++vD D++d+sNl+rq lf+ ++v++pK  +a e  + 
  MMETSP1061-20121228|47168_1 11 TVGKEMFRKIQTSNILCVGAGGIGCELLKDMALSGFRRVQVVDLDTIDVSNLNRQLLFRGQHVGMPKCTVACEVATG 87
                 6899999*************************************************************999776655 PP

  == domain 2    score: 41.4 bits;  conditional E-value: 3.2e-14
    TIGR02356 108 lieqvdlvlDctDnfktrylindaceaagkPlisaavvgfeGqvavldss.kgpclrcllpeapaadtaksCae 180
                   i++ dlv+ + Dn+++r  +n+ c aa+ Pli a+  g+ Gqv+v++++   +c+ c  +e  +++  + C+ 
  MMETSP1061-20121228|47168_1 136 FIKEFDLVVNALDNVEARRRVNRLCLAADVPLIEAGTTGYLGQVTVIHKNsGVACYECTTQE--TQKVYPICTI 207
                  5899*******************************************9986778*****995..4577777765 PP

>> TIGR02355  moeB: molybdopterin synthase sulfurylase MoeB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.2   0.0   2.4e-15   1.6e-12      20     103 ..      18     101 ..      10     108 .. 0.90
   2 !   38.1   0.1   3.4e-13   2.4e-10     103     171 ..     127     196 ..     115     219 .. 0.89
   3 ?   -1.3   0.0      0.37   2.5e+02     103     155 ..     265     319 ..     254     326 .. 0.75

  Alignments for each domain:
  == domain 1    score: 45.2 bits;  conditional E-value: 2.4e-15
    TIGR02355  20 eklkaskvlivGlGGlGcaasqylaaaGvGrltlvdfdtvelsnlqrqvlhsdanigqpkvesakdaleelnphieietinakl 103
                   k+++s++l vG+GG+Gc   + +a +G  r+ +vd dt+++snl+rq+l +  ++g+pk   a +  + + p + i + ++k 
  MMETSP1061-20121228|47168_1  18 RKIQTSNILCVGAGGIGCELLKDMALSGFRRVQVVDLDTIDVSNLNRQLLFRGQHVGMPKCTVACEVATGMVPPLTIPSNDEKT 101
                  57899**********************************************************999999888888887666655 PP

  == domain 2    score: 38.1 bits;  conditional E-value: 3.4e-13
    TIGR02355 103 lddeela.aliakhdvvvdctdnvevrnqlnrqcfaakvplvsgaairleGqvsvftyqaeepcyrclsk 171
                  +d ++++  +i+++d+vv++ dnve r ++nr c aa vpl+ + +  + Gqv+v+  ++   cy+c ++
  MMETSP1061-20121228|47168_1 127 CDTSKFNvPFIKEFDLVVNALDNVEARRRVNRLCLAADVPLIEAGTTGYLGQVTVIHKNSGVACYECTTQ 196
                  56666652489********************************************************876 PP

  == domain 3    score: -1.3 bits;  conditional E-value: 0.37
    TIGR02355 103 lddeelaaliakhdvvvdctdnvevrnqlnrqcf..aakvplvsgaairleGqvs 155
                   +d++ ++l +    v++     e+++ql+   +  a+k+p    a+i  +G+ s
  MMETSP1061-20121228|47168_1 265 ASDANEESLTKAIRQVLEDLYSSEIKKQLDMGRYkaAKKTPTCIKASIIENGMAS 319
                  5667777777888888888888999999998776225789998888888777765 PP

>> TIGR02354  thiF_fam2: thiamine biosynthesis protein ThiF
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.8   0.0   1.3e-13   9.1e-11      10     103 ..      11     105 ..       6     109 .. 0.90
   2 ?    2.3   0.0     0.041        28     107     126 ..     136     155 ..     114     181 .. 0.82

  Alignments for each domain:
  == domain 1    score: 39.8 bits;  conditional E-value: 1.3e-13
    TIGR02354  10 rhtekvveklkkasvaiaGlGGlGsnvainlaraGigklilvdfdvvepsnlnrqq.ykvsdvGkkktealkeqiseinPyveieiidekideen 103
                    +++++ k++ +++  +G GG+G ++  ++a +G +++++vd d +++snlnrq  ++ ++vG++k+    e    + P + i   dek d  n
  MMETSP1061-20121228|47168_1  11 TVGKEMFRKIQTSNILCVGAGGIGCELLKDMALSGFRRVQVVDLDTIDVSNLNRQLlFRGQHVGMPKCTVACEVATGMVPPLTIPSNDEKTDGGN 105
                  5678999************************************************637889*******999999999999999998888887665 PP

  == domain 2    score: 2.3 bits;  conditional E-value: 0.041
    TIGR02354 107 lfkdadivieafdnaeakal 126
                  ++k+ d+v++a+dn ea+  
  MMETSP1061-20121228|47168_1 136 FIKEFDLVVNALDNVEARRR 155
                  89**************9865 PP

>> TIGR03736  PRTRC_ThiF: PRTRC system ThiF family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   4.4e-06     0.003      11      81 ..      22      83 ..      11     106 .. 0.84
   2 !    5.2   0.0    0.0035       2.4     104     130 ..     137     163 ..     117     205 .. 0.75

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 4.4e-06
    TIGR03736 11 kvkvvlvGaGGtGsqllegLarlhkalkalGhpaGlkvtvlDdDtvseanvgRqa.fapadvGankaivlvq 81
                 + +++ vGaGG G +ll+ +a         G +   +v+v+D Dt+  +n+ Rq+ f  + vG  k +v  +
  MMETSP1061-20121228|47168_1 22 TSNILCVGAGGIGCELLKDMA-------LSGFR---RVQVVDLDTIDVSNLNRQLlFRGQHVGMPKCTVACE 83
                 5689***********998654.......35777...89****************7367789***99998765 PP

  == domain 2    score: 5.2 bits;  conditional E-value: 0.0035
    TIGR03736 104 lssadlvigavDnrkaRkailealeeg 130
                   +++dlv+ a Dn +aR+ +++ + ++
  MMETSP1061-20121228|47168_1 137 IKEFDLVVNALDNVEARRRVNRLCLAA 163
                  4567***************99876544 PP

>> TIGR01381  E1_like_apg7: E1-like protein-activating enzyme Gsa7p/Apg7p
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   1.4e-06   0.00097     335     471 ..      20     163 ..      15     198 .. 0.70

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 1.4e-06
    TIGR01381 335 lssvkvlllGaGtlGcqvarvllGyGvrhitfvdngkvsfsnPvrqslynfedcleggegkaetaakalkrifPaie.......asgvr..levPmpGhpisekeekelledikrl.eelikehdvvfllldsrearWlPtvlcara 471
                  ++ + +l +GaG +Gc++ + +   G r++  vd  ++ +sn  rq l+  +   + g +k   a +    + P ++       + g +   + P    ++s +  +    d+ ++ + +ike d v  +ld  ear     lc  a
  MMETSP1061-20121228|47168_1  20 IQTSNILCVGAGGIGCELLKDMALSGFRRVQVVDLDTIDVSNLNRQLLFRGQ---HVGMPKCTVACEVATGMVPPLTipsndekTDGGNssNDNPSDLPSVSYQAHHGNVCDTSKFnVPFIKEFDLVVNALDNVEARRRVNRLCLAA 163
                  678899******************************************9754...44567776666655555554431111111233221123455555677666666666766662357777777777777777776666666555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (685 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 2583.22
//
Query:       MMETSP1061-20121228|47179_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 701.63
//
Query:       MMETSP1061-20121228|47182_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|47193_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|47213_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        48  (0.0117016); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.30
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|47232_1  [L=91]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (91 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.35
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|47256_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                      123  (0.0299854); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|47257_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.37
# Mc/sec: 299.65
//
Query:       MMETSP1061-20121228|47265_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|47272_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 389.02
//
Query:       MMETSP1061-20121228|47276_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 431.96
//
Query:       MMETSP1061-20121228|47273_1  [L=510]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (510 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2321.19
//
Query:       MMETSP1061-20121228|47290_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.4e-06   22.8   0.0    6.3e-06   22.6   0.0    1.0  1  TIGR01418 PEP_synth: phosphoenolpyruvate synthase


Domain annotation for each model (and alignments):
>> TIGR01418  PEP_synth: phosphoenolpyruvate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.6   0.0   1.5e-09   6.3e-06       9      97 ..      53     139 ..      47     144 .. 0.81

  Alignments for each domain:
  == domain 1    score: 22.6 bits;  conditional E-value: 1.5e-09
    TIGR01418   9 ekddvelvGGknaslGelikelseagvkvPegfvvtaeayrefleeagieekirel.leeldvedv.eelekaskeireliletelpeele 97 
                  e  ++ lvGGk+ +   l +     g ++P++fv+ +  y   + eagi + i+++ +++l  e+v ++ +++ + ire+i  t+l++e+ 
  MMETSP1061-20121228|47290_1  53 ECATLGLVGGKALQCWRLAR----HGFPIPKSFVIPTYVYSLHIAEAGIVDLINDVyISDLRDENVrNAAKTKLATIREKIAATSLNQEVV 139
                  55678899***998877777....******************************9734566666651445566789*********999875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.18s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 688.23
//
Query:       MMETSP1061-20121228|47296_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 778.74
//
Query:       MMETSP1061-20121228|47297_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.17s 00:00:00.33 Elapsed: 00:00:00.22
# Mc/sec: 1745.86
//
Query:       MMETSP1061-20121228|47312_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       19  (0.00463189); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 375.13
//
Query:       MMETSP1061-20121228|47324_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 554.35
//
Query:       MMETSP1061-20121228|47310_1  [L=386]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (386 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       170  (0.0414432); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.23
# Mc/sec: 2215.12
//
Query:       MMETSP1061-20121228|47325_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 201.13
//
Query:       MMETSP1061-20121228|47314_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        6.3    3.0  13.0         11    2.2   9.0    1.3  1  TIGR01642 U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor


Domain annotation for each model (and alignments):
>> TIGR01642  U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.2   9.0    0.0026        11      23      71 ..      20      73 ..      13     110 .. 0.48

  Alignments for each domain:
  == domain 1    score: 2.2 bits;  conditional E-value: 0.0026
    TIGR01642 23 RsRkRsrd.rsrdRdRdrrdrrrsrrkdsRdRdrrrydsrsissleeds.....r 71
                 RsR+R+r+ r+r  +R++++r + r +++R R+++++ ++s ++l+ +       
  MMETSP1061-20121228|47314_1 20 RSRNRRRNaRQRGQSREQEERIKHREQQQR-RRQQQEPKYSVDELRLKGllfcgF 73
                 555554431333444444433333333332.233344455555555444444431 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       152  (0.0370551); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.19s 00:00:00.36 Elapsed: 00:00:00.22
# Mc/sec: 2105.83
//
Query:       MMETSP1061-20121228|47326_1  [L=325]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (325 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.24
# Mc/sec: 1787.35
//
Query:       MMETSP1061-20121228|47319_1  [L=491]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
          1    4.7  43.1      0.032    9.7  19.4    2.0  2  TIGR02168 SMC_prok_B: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.0   4.9    0.0033        14     350     414 ..      44     112 ..      32     187 .. 0.36
   2 ?    9.7  19.4   7.9e-06     0.032     251     515 ..     209     464 ..     201     485 .. 0.44

  Alignments for each domain:
  == domain 1    score: 1.0 bits;  conditional E-value: 0.0033
    TIGR02168 350 keelesleaeleeaeaeleelesrleeleeeleelr....sevaeleeqlaslnaelerleaeleqlee 414
                  + ++++++++ ++ ++ l+++++r+e++e el++lr    ++  e   + +s n+ +++l++   +l++
  MMETSP1061-20121228|47319_1  44 AVQMQKMRDANTKYKNLLKMAKERIEQQEIELKDLReterKRAEEELASRDSGNNVVKYLDDANDDLTN 112
                  222222222222222222222222222222222211000011122222222222222222222222222 PP

  == domain 2    score: 9.7 bits;  conditional E-value: 7.9e-06
    TIGR02168 251 aeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleeleeeleelrsevaeleeqlaslnaelerleaeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeee..laqlqarlesleslqenleglsegvkallk 515
                  ++++++e+++++++++ee+ ++r + +  +++++++ +elq+ + e+ + + e++++ e      + ++   +++ +le+ + e++++ ++++e ++ l +e e+l+++ +e ++ + + ++r+e + +e +e+ +++++++++ +++++++++++ +     +  ++ k + +e      + e + ++l+e++   +++ +e  e+++++ ++ +++  +  +a   + +++++   a+ +++l  l++l+ n+ + + +v+  ++
  MMETSP1061-20121228|47319_1 209 SSRTMSEADKKVSTITEEYRRFRVKSEMTRKQMDAQIRELQSSQVEVTKRQIEVREHAEH-----ELEATRRTEQSQLERMRAEAARQEDQWKEAYDILLKENEALKSSGSE-AMLASQWRQRYEVCLKERDEAVNKLQSVQQKHEQHRQQQQSASFSSPPNVRGGKNVKGSGSEG-----KYEMKYRDLKESFRLYRKKAKEIFESQAAAAATNNSAGGRKSAADMMVLQMSQQnsNAEEDSKLSYLKNLMVNYLTADPEVRDHME 464
                  444445555555555555555555555555554444444444443333333333322222.....12222223334444444445555555555555555555555555555.344444444444444555555555555555444444444444433333333333333333222.....23344444444444444444444444444444444444444444444444333300334455666666666666655555554444 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (491 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       449  (0.109459); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.29u 0.16s 00:00:00.44 Elapsed: 00:00:00.30
# Mc/sec: 2160.22
//
Query:       MMETSP1061-20121228|47336_1  [L=609]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (609 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.12s 00:00:00.40 Elapsed: 00:00:00.28
# Mc/sec: 2870.76
//
Query:       MMETSP1061-20121228|47370_1  [L=112]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (112 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 739.14
//
Query:       MMETSP1061-20121228|47374_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.35
# Mc/sec: 256.44
//
Query:       MMETSP1061-20121228|47392_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 1319.89
//
Query:       MMETSP1061-20121228|47397_1  [L=118]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (118 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.19
# Mc/sec: 819.72
//
Query:       MMETSP1061-20121228|47413_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 1014.23
//
Query:       MMETSP1061-20121228|47419_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 514.06
//
Query:       MMETSP1061-20121228|47409_1  [L=331]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-09   34.6   0.0    0.00052   17.3   0.0    2.3  2  TIGR03162 ribazole_cobC: alpha-ribazole phosphatase
     0.0015   15.9   0.0     0.0024   15.2   0.0    1.3  1  TIGR03848 MSMEG_4193: probable phosphomutase, MSMEG_4193 family


Domain annotation for each model (and alignments):
>> TIGR03162  ribazole_cobC: alpha-ribazole phosphatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   1.4e-06    0.0029      20      61 ..     141     182 ..     134     195 .. 0.93
   2 !   17.3   0.0   2.6e-07   0.00052     114     163 ..     256     306 ..     227     319 .. 0.86

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 1.4e-06
    TIGR03162  20 tDvpLaekgeeqaaalrekledvkfdavvsSplsRcrelAel 61 
                  +D pL+e+g++q++  r + +  + + v+ Spl Rc ++A+l
  MMETSP1061-20121228|47409_1 141 LDPPLTETGRRQSKDRRIQCATLSPQLVIVSPLLRCIQTAKL 182
                  5889************************************86 PP

  == domain 2    score: 17.3 bits;  conditional E-value: 2.6e-07
    TIGR03162 114 GEsvadfsqRveefleelake.ekenvlivtHgGvirallahllglpleql 163
                   E++ + s+R+ +f+ e++++  +++++ivtH+ ++ +ll  + +++ e+l
  MMETSP1061-20121228|47409_1 256 RETLLEQSERIYNFMTEYVRNrPEQDIAIVTHSTILFTLLNAVMDIESEDL 306
                  699999***************9****************9999999877665 PP

>> TIGR03848  MSMEG_4193: probable phosphomutase, MSMEG_4193 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.2   0.0   1.2e-06    0.0024      27      64 ..     145     182 ..     142     209 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.2 bits;  conditional E-value: 1.2e-06
    TIGR03848  27 LderGreqaaalaerladlpiaaivssPlercretvea 64 
                  L+e+Gr+q+++   + a+l+ + ++ sPl rc +t++ 
  MMETSP1061-20121228|47409_1 145 LTETGRRQSKDRRIQCATLSPQLVIVSPLLRCIQTAKL 182
                  89*********************************985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (331 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.24
# Mc/sec: 1820.35
//
Query:       MMETSP1061-20121228|47431_1  [L=398]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (398 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.12s 00:00:00.34 Elapsed: 00:00:00.31
# Mc/sec: 1694.57
//
Query:       MMETSP1061-20121228|47441_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 568.13
//
Query:       MMETSP1061-20121228|47426_1  [L=797]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-35  120.3  28.0      6e-24   82.5   8.5    2.1  2  TIGR00797 matE: MATE efflux family protein


Domain annotation for each model (and alignments):
>> TIGR00797  matE: MATE efflux family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.5   8.5   1.5e-27     6e-24       1     193 [.     282     486 ..     282     501 .. 0.88
   2 !   43.8   5.4   8.2e-16   3.4e-12     218     394 ..     611     795 ..     588     797 .] 0.74

  Alignments for each domain:
  == domain 1    score: 82.5 bits;  conditional E-value: 1.5e-27
    TIGR00797   1 PailaniaqpllslvDtafvGhlg.pveLaavglgslvlmvliiillglltattalvaqavGagnqq........rlsrsasqslllalllgllvavvlifaakpllslmgadeevaelaqeYlrililgipavllslalqgvlrGagdtktpliitvignviniiLdyilifkfg...lGivGaAlAtvisqylmflllllyil 193
                  Pai++ +  pllsl+Dt  vG l+ +v+ aa++ +  v+ ++ +++++l+t+tt +va a  + +          +++ +++ s++++++lg++++++  ++ + ++    +++++  +a++Y+ri+ lg+pa ++    q ++ G++d k pl+++ ++ ++n+  d+ ++ + +    G +GaA+Atv+sqy+++++++ ++ 
  MMETSP1061-20121228|47426_1 282 PAIGVWLCSPLLSLIDTSAVGVLSgTVQQAALSPAVAVTDYAALLIAFLYTGTTNMVASAQESDRGTvdkprtakMMIGAMRMSTYVGVGLGAILFAFAQPLLRAIIGNDAISPAIFAAAMKYVRIRALGMPAAAILGSTQAACLGMQDIKSPLYVLAAAAIVNFLGDVFFVGHSNpliGGTAGAAWATVFSQYAAVAFFVRWLC 486
                  99*********************99*********************************987444444666666666666666677777777766666666666666666669*************************************************************9999988999***************9998876 PP

  == domain 2    score: 43.8 bits;  conditional E-value: 8.2e-16
    TIGR00797 218 klglpll.lrvilvsflvtllallvarlGstalAahqvalqvesllfmlafGlaiAvsalvGqalGag..dpkrake...varvalklglllglvlaiililfrefiarlftkdpevlelaaillifvaltqpsdalafvldGvlrGagdtkva..aivtvvs...awviglpllfllglvtglglkg 394
                     +p++  +v+ vs +v+++++++++lG++++Aa+qv++++   l  +a++l+++++++v  a++++  +p++a++   v+   lk g ++g+ +++  +++ + + +lft+d++v++l+++++++++++  + ++    +G+l G +d +++  +++ +++   ++++g+    l g v+++gl+ 
  MMETSP1061-20121228|47426_1 611 PYVIPVTtTQVGRVSGYVAMAHVVASSLGTVSMAAQQVIVSIFYCLCPIADSLSLTAQSFVP-AISEKeeSPEKAAAmkkVLINFLKAGAVFGGAMMAA-VSGIPLLTGLFTSDQAVISLVNSVVPLLLVFFGVHGFVCGSEGMLLGQKDLGYLgkMYAAFFAavpYVMMGVKRKALAG-VESVGLTS 795
                  5555544146778999********************************************97.444431145665550005555567788888877765.4566689*******************************************99864455555541114444444444554.55555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (797 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       174  (0.0424183); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.35
# Mc/sec: 3005.58
//
Query:       MMETSP1061-20121228|47452_1  [L=37]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (37 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 212.33
//
Query:       MMETSP1061-20121228|47470_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0034   14.6   2.9      0.004   14.4   2.0    1.0  1  TIGR00383 corA: magnesium and cobalt transport protein CorA
  ------ inclusion threshold ------
       0.01   12.6   6.4       0.01   12.6   4.4    1.0  1  TIGR00019 prfA: peptide chain release factor 1
      0.062    8.8   8.0      0.067    8.7   5.5    1.0  1  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
      0.075    8.5   8.0      0.086    8.3   5.6    1.0  1  TIGR02169 SMC_prok_A: chromosome segregation protein SMC
       0.42    8.6   6.8       0.89    7.5   1.6    2.1  2  TIGR00293 TIGR00293: prefoldin, alpha subunit


Domain annotation for each model (and alignments):
>> TIGR00383  corA: magnesium and cobalt transport protein CorA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   2.0   4.8e-06     0.004     142     216 ..       7      81 ..       2      91 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 4.8e-06
    TIGR00383 142 ldalideyfevlekiedeleeLedeiisgedselldeilslrkellalrralidkrdvlnlllrkekek.liteev 216
                  l+++++++   l k ++ lee ++  is+ ++++ +ei +lr++ll+lr++  +   ++++l  + k + ++t  +
  MMETSP1061-20121228|47470_1   7 LEEKVRDLTTKLDKCNATLEEEREYWISK-ENSSDQEISRLRENLLELRESNAEREVLISSLQEDLKASeIQTLVA 81 
                  8999*****************99999999.778899***************9887777888887777664555545 PP

>> TIGR00019  prfA: peptide chain release factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   4.4   1.2e-05      0.01       9      91 ..       3      82 ..       1      92 [] 0.85

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
    TIGR00019  9 klesleeryeeleelLsdpevisdqkklrklskeysqleeivkkyeeykklqedlkeakellekedkelrelakeeleelekk 91
                 ++++lee++++l+++L++ + + ++++   +ske s+ +ei++  e++ +l+e  +e + l+ + +++l+    +e+++l +k
  MMETSP1061-20121228|47470_1  3 NVQELEEKVRDLTTKLDKCNATLEEEREYWISKENSSDQEISRLRENLLELRESNAEREVLISSLQEDLKA---SEIQTLVAK 82
                 6899*****************************************************99999987888876...455554433 PP

>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   5.5   8.2e-05     0.067     688     773 ..       4      86 ..       2      92 .] 0.45

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 8.2e-05
    TIGR02168 688 ieeleekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeele 773
                  ++eleek+++l+++l++ +    +leee+e   ++++++++++s+l+++l +l+++  + e  +++l+++l+  e +   +++e++
  MMETSP1061-20121228|47470_1   4 VQELEEKVRDLTTKLDKCNA---TLEEEREYWISKENSSDQEISRLRENLLELRESNAEREVLISSLQEDLKASEIQTLVAKNEVS 86 
                  34444444444444444444...233333444444444455555555555555555555555555555555555544444444444 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.3   5.6    0.0001     0.086     374     455 ..       4      89 ..       2      92 .] 0.58

  Alignments for each domain:
  == domain 1    score: 8.3 bits;  conditional E-value: 0.0001
    TIGR02169 374 leevdkeaaelreelke....lkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkae 455
                  ++e++++ + l  +l++    l+e+ e   ++ n++ +e++rl e+l +l+e  ae +  + +++e++++ e ++  +++e++ ++
  MMETSP1061-20121228|47470_1   4 VQELEEKVRDLTTKLDKcnatLEEEREYWISKENSSDQEISRLRENLLELRESNAEREVLISSLQEDLKASEIQTLVAKNEVSDST 89 
                  34444444444444433000134444455667777777777777777777777777777777777777777777777777776665 PP

>> TIGR00293  TIGR00293: prefoldin, alpha subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.8   0.1     0.016        13      91     111 ..       7      27 ..       3      35 .. 0.47
   2 ?    7.5   1.6    0.0011      0.89       8      52 ..      36      80 ..      30      84 .. 0.82

  Alignments for each domain:
  == domain 1    score: 3.8 bits;  conditional E-value: 0.016
    TIGR00293  91 lkkkieelekaieklqeelqe 111
                  l++k+ +l+++++k ++ l+e
  MMETSP1061-20121228|47470_1   7 LEEKVRDLTTKLDKCNATLEE 27 
                  333333333333333333333 PP

  == domain 2    score: 7.5 bits;  conditional E-value: 0.0011
    TIGR00293  8 lqqlqeevealqaeiaalraliaeleeaietleslkkaegkevLV 52
                  +  ++e++ l++++ +lr++ ae e  i+ l++  ka   ++LV
  MMETSP1061-20121228|47470_1 36 ENSSDQEISRLRENLLELRESNAEREVLISSLQEDLKASEIQTLV 80
                 57789*************************998766553444555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       267  (0.0650902); expected 82.0 (0.02)
Passed bias filter:                      188  (0.0458313); expected 82.0 (0.02)
Passed Vit filter:                        27  (0.00658216); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.15u 0.16s 00:00:00.31 Elapsed: 00:00:00.23
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|47491_1  [L=166]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (166 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 995.92
//
Query:       MMETSP1061-20121228|47507_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 489.46
//
Query:       MMETSP1061-20121228|47510_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 496.28
//
Query:       MMETSP1061-20121228|47523_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|47526_1  [L=622]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.8e-54  182.7   0.0    4.1e-54  181.5   0.0    1.5  1  TIGR00858 bioF: 8-amino-7-oxononanoate synthase
    3.5e-51  171.9   0.0    1.6e-50  169.7   0.0    1.8  1  TIGR01825 gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase
    7.4e-45  151.3   0.0    1.7e-44  150.2   0.0    1.4  1  TIGR01822 2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
    2.3e-38  129.9   0.0    3.8e-38  129.2   0.0    1.2  1  TIGR01821 5aminolev_synth: 5-aminolevulinic acid synthase
    7.8e-06   23.1   0.0     0.0061   13.5   0.0    3.3  3  TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
     0.0011   16.3   0.0      0.036   11.2   0.0    2.2  2  TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
     0.0043   14.1   0.0     0.0076   13.3   0.0    1.3  1  TIGR03576 pyridox_MJ0158: pyridoxal phosphate enzyme, MJ0158 family
      0.007   13.1   0.0      0.019   11.7   0.0    1.6  2  TIGR01328 met_gam_lyase: methionine gamma-lyase
  ------ inclusion threshold ------
      0.031   10.8   0.0       0.05   10.1   0.0    1.2  1  TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase


Domain annotation for each model (and alignments):
>> TIGR00858  bioF: 8-amino-7-oxononanoate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  181.5   0.0     9e-57   4.1e-54      19     363 ..     223     605 ..     206     607 .. 0.80

  Alignments for each domain:
  == domain 1    score: 181.5 bits;  conditional E-value: 9e-57
    TIGR00858  19 dgrellnfssNdYLgLakhpelieaaqealekygagstaSrlvsGnsklheelEeelaefkgteaallfssGylaNlgvisalvekedlvlsDklnHAslidgarLskakvlrykHndvealerlLeker........g..errklivtdgvFSmDGdvaplkelvalaeryealllvDdAHgtGvlGedGrGlleefglkke.evdilvgTlsKalgslGavvvgsealidyLlnrartfifsTalpPavvaaalaaleliqeeperreklakliarlrkel.eklg.............felkesetpivplligee.....eealalaeelqeegilvaaiRpP.....TVpkgta...RlRltlsaahteedielllea 363
                   + ++lnf+  d+Lg+ + +el++a ++a+++yg+gs + r   G++++h ++Eee+a f +t++a+l+s G  + +++++a+++++dl++ D+     l  g++Ls+a+v  ++Hndve+ler L++ +        +  ++r++iv +g++   G++apl+e+val+++y+  l++D+  ++G+lG++GrG+lee g ++  + +i++  l  ++gs+G+v vg+e+++d+   + + + fs + pP++  a+ aal+ ++e+pe  ++l++++++  ++l ek++             + +++s++piv l +  e     + +  + +e+ ++g+ ++a   P       +  t+    +R+t+s  ht+ed ++++++
  MMETSP1061-20121228|47526_1 223 TELRVLNFCNFDFLGFQTCEELRKASTDAMNRYGFGSCGPRGFYGTIDVHLQVEEEMAGFCKTDQAILYSDGASTCTSTVAAFAKRGDLLVVDEGVYEPLSTGVHLSRANVHWFRHNDVEDLERVLKELQatdkklgrKpcAQRRFIVIEGLYKNLGTIAPLDEIVALKHKYKYRLILDESFSFGTLGKTGRGSLEEHGKRPMyDAEITTIALENSMGSVGGVSVGNEEVVDHQRLSGAGYCFSASAPPFTSSATVAALRQLEERPELVQRLQSNVRYTYQRLlEKVEehngtntkkgfnlVVTSDSRSPIVVLQLEREsvyesAIMSGIMRECLQRGVGIVASTTPfeespCAACTTElapCIRMTVSTLHTKEDTDMAIDT 605
                  34589***********************************************************************************************************************998754111111111235789****************************************************99876425678888899***********************************************************99876544431344344478888887666667788888887765441110022223566777777777766555222212222221222578888888888887777665 PP

>> TIGR01825  gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.7   0.0   3.4e-53   1.6e-50      34     374 ..     226     605 ..     214     612 .. 0.81

  Alignments for each domain:
  == domain 1    score: 169.7 bits;  conditional E-value: 3.4e-53
    TIGR01825  34 kvinlssnnylGlaahprlkeaakeaiqqyGvGaGavrtiaGtlelheeleeklakfkkteaalvfqsGfntnlgvlsallrkedivlsdelnhasiidGlrlskakkkiykhvdmddlerklrenkek..........kkklivtdGvfsmdGdvaplpeivelaekydalvyvddahgsGvlGekGrGtvkhfgledkvdiqvGt..lskaiGvvGGyvaGskelieylkararPflfstalaPavvaaiieavdklleedelveklwdntkylkael.skl..........Gydl...gesetPitPvllgdekvake.....fsrrllde..gvfaksivfPtvp.....rgta.rirnivtaehtkddldqalda 374
                  +v+n++  ++lG+ + ++l++a+++a++ yG G+   r   Gt+++h ++ee++a f kt+ a+++  G +t  ++++a  +++d+++ de  +  +  G+ ls+a+   ++h d++dler+l+e + +          ++++iv +G++   G +apl+eiv l +ky    ++d++ + G lG++GrG ++  g     d ++ t  l  ++G vGG   G++e++++ +  +  + fs++ +P   +a ++a+ +l e +elv++l  n +y  + l +k+          G++l   ++s+ Pi+ + l  e+v +      + r  l++  g+ a +  f   p      ++a  ir  v++ htk+d d a+d+
  MMETSP1061-20121228|47526_1 226 RVLNFCNFDFLGFQTCEELRKASTDAMNRYGFGSCGPRGFYGTIDVHLQVEEEMAGFCKTDQAILYSDGASTCTSTVAAFAKRGDLLVVDEGVYEPLSTGVHLSRANVHWFRHNDVEDLERVLKELQATdkklgrkpcaQRRFIVIEGLYKNLGTIAPLDEIVALKHKYKYRLILDESFSFGTLGKTGRGSLEEHGKRPMYDAEITTiaLENSMGSVGGVSVGNEEVVDHQRLSGAGYCFSASAPPFTSSATVAALRQLEERPELVQRLQSNVRYTYQRLlEKVeehngtntkkGFNLvvtSDSRSPIVVLQLERESVYESaimsgIMRECLQRgvGIVASTTPFEESPcaactTELApCIRMTVSTLHTKEDTDMAIDT 605
                  79**************************************************************************************************************************9665444788888878899*****************************************************9988888887733679***************************************************************655442443222222222266641114566666666555555433311011445556663344555555533331111122222578888888888888888876 PP

>> TIGR01822  2am3keto_CoA: 2-amino-3-ketobutyrate coenzyme A ligase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  150.2   0.0   3.6e-47   1.7e-44      39     385 ..     226     608 ..     217     613 .. 0.83

  Alignments for each domain:
  == domain 1    score: 150.2 bits;  conditional E-value: 3.6e-47
    TIGR01822  39 evlnfcannylGlsdhpeviqaakdaldehGfGlssvrficGtqdlhkelekklaeflgtedailyascfdangGlfeallgeedaiisdalnhasiidGvrlckakryryenadledleaklkearaa........garlrliatdGvfsmdGtiapldeicalaekydalvlvdechatGflGatGrGsaelldv..ldkvdiitgtlGkalGGasGGfttakkevvellrqrsrpylfsnslapavvgasikvlelleasnelrdklventryfrekl...........eaaGfdvkpaehaiipvm........lydaklaqklaerlleeGiyviGffypv..vpkGqa......rirvqlsaaheeeqldkaveafvk 385
                   vlnfc  ++lG+    e+ +a+ da++ +GfG +  r   Gt d+h ++e+++a f +t++aily+    + +    a+    d ++ d+  +  +  Gv l +a+ + ++++d+edle+ lke +a+         a+ r+i+ +G +   Gtiapldei+al +ky+  +++de+ + G lG+tGrGs e  +   +   +i t +l  ++G ++GG + +++evv+  r     y fs s +p   +a++++l  le+  el+++l++n+ry  ++l           +  Gf++  ++++ +p++        +y++ + + + ++ l++G+ ++    p    p           ir+ +s+ h++e+ d a++++++
  MMETSP1061-20121228|47526_1 226 RVLNFCNFDFLGFQTCEELRKASTDAMNRYGFGSCGPRGFYGTIDVHLQVEEEMAGFCKTDQAILYSDGASTCTSTVAAFAKRGDLLVVDEGVYEPLSTGVHLSRANVHWFRHNDVEDLERVLKELQATdkklgrkpCAQRRFIVIEGLYKNLGTIAPLDEIVALKHKYKYRLILDESFSFGTLGKTGRGSLEEHGKrpMYDAEITTIALENSMG-SVGGVSVGNEEVVDHQRLSGAGYCFSASAPPFTSSATVAALRQLEERPELVQRLQSNVRYTYQRLlekveehngtnTKKGFNLVVTSDSRSPIVvlqleresVYESAIMSGIMRECLQRGVGIVASTTPFeeSPCAACttelapCIRMTVSTLHTKEDTDMAIDTLIE 608
                  69*************************************************************************************************************************9976542222222247789*************************************************999875337788999999*99996.68*********************************************************9877662222222222234688887766655555411222222467777777888888898888877766522233221112222589999999999999999988765 PP

>> TIGR01821  5aminolev_synth: 5-aminolevulinic acid synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.2   0.0   8.4e-41   3.8e-38      41     315 ..     222     505 ..     188     514 .. 0.86

  Alignments for each domain:
  == domain 1    score: 129.2 bits;  conditional E-value: 8.4e-41
    TIGR01821  41 edgkkdvtvWcsndylglskhpkvleamkealdkvGaGaGGtrnisGtnkslveleaeladlhkkesalvfssgyvandatlatlakilpdlvifsdelnhasmieGikkskaekvifrhndvaeleklles...adkk...aP....kliafesvysmdGdiapikeicdladkygaltyldevhavGlyGprGaGiaerdg..vmdridiieGtlakafGvlGGyiaasaklidavrslapgfifttslpPavaagalasirhlkesqklreaqqekvkklkkll 315
                  e  + +v  +c  d+lg+  + ++ +a+++a++++G G+ G r   Gt   ++++e+e+a + k + a+++s g  + ++t+a++ak     ++  de+ +  + +G++ s+a+ + frhndv++le++l++   +dkk   +P    + i++e +y   G+iap++ei+ l +ky     lde  + G  G+ G G  e +g   m   +i + +l  + G++GG   ++++++d  r   +g+ f++s pP  +++++a++r l e+ +l ++ q++v++  ++l
  MMETSP1061-20121228|47526_1 222 ET-ELRVLNFCNFDFLGFQTCEELRKASTDAMNRYGFGSCGPRGFYGTIDVHLQVEEEMAGFCKTDQAILYSDGASTCTSTVAAFAKRGD--LLVVDEGVYEPLSTGVHLSRANVHWFRHNDVEDLERVLKElqaTDKKlgrKPcaqrRFIVIEGLYKNLGTIAPLDEIVALKHKYKYRLILDESFSFGTLGKTGRGSLEEHGkrPMYDAEITTIALENSMGSVGGVSVGNEEVVDHQRLSGAGYCFSASAPPFTSSATVAALRQLEERPELVQRLQSNVRYTYQRL 505
                  33.3458899**************************************************************************999744..4556*******************************98765111444322222222268***********************************************9999984457888999999*****************************************************999999999998766554 PP

>> TIGR02326  transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.9   0.0     0.046        21     217     247 ..     118     150 ..     108     161 .. 0.79
   2 !   13.5   0.0   1.3e-05    0.0061      73     173 ..     303     409 ..     283     413 .. 0.77
   3 ?    3.1   0.0     0.019       8.8     242     300 ..     470     536 ..     453     555 .. 0.67

  Alignments for each domain:
  == domain 1    score: 1.9 bits;  conditional E-value: 0.046
    TIGR02326 217 rslsldlydqwea.mekkeGkw.rftsPthvva 247
                   ++ +d+ d +++ ++k+eGkw   t P h v+
  MMETSP1061-20121228|47526_1 118 DAIGVDIDDDFHIvVQKQEGKWlTVTVPDHWVT 150
                  5678999999876268899***55799999886 PP

  == domain 2    score: 13.5 bits;  conditional E-value: 1.3e-05
    TIGR02326  73 savpkdgkllvvinGay.....Gkrlaqiaelleipvvvveteekeatnvaevekilaadpeith.valvh.setttGilnPieavakvakryGkvlivdamssfGgi 173
                  +a +k g llvv++G y     G  l++ a++    + +ve  e +  ++++ +k l  +p     + ++       G + P+++++++ ++y  +li+d   sfG++
  MMETSP1061-20121228|47526_1 303 AAFAKRGDLLVVDEGVYeplstGVHLSR-ANVHWFRHNDVEDLERVLKELQATDKKLGRKPCAQRrFIVIEgLYKNLGTIAPLDEIVALKHKYKYRLILDESFSFGTL 409
                  46779999********944433344443.67777788888888999999********99997764144444145789*****************************87 PP

  == domain 3    score: 3.1 bits;  conditional E-value: 0.019
    TIGR02326 242 PthvvaafaqallelekeGGvearyq........ryqanqkllvaelralGfesllddelqsPiits 300
                  P  +  a   al +le+   +  r q        r  ++ +   +  ++ Gf+ ++ ++ +sPi++ 
  MMETSP1061-20121228|47526_1 470 PPFTSSATVAALRQLEERPELVQRLQsnvrytyqRLLEKVEEHNGTNTKKGFNLVVTSDSRSPIVVL 536
                  56666677777777777666665543222000004444444455556789**************974 PP

>> TIGR03301  PhnW-AepZ: 2-aminoethylphosphonate aminotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.2   0.0     8e-05     0.036      60     169 ..     295     409 ..     284     413 .. 0.78
   2 ?    2.5   0.0     0.035        16     240     317 ..     473     560 ..     460     569 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 8e-05
    TIGR03301  60 taaveavigslvpkegkllvlenGaYgeRlaki....aeylglphtalkfseeeevdlseieelLaedpdithvavvH..hEtttgiLnpleaiakvarshgavlivDavSslgai 169
                  + +   ++++   k+g llv++ G+Y    + +    a+++   h +++  e    +l++ ++ L+ +p  +   +v        g ++pl++i+++ +++  +li+D   s+g++
  MMETSP1061-20121228|47526_1 295 ASTCTSTVAAF-AKRGDLLVVDEGVYEPLSTGVhlsrANVHWFRHNDVEDLERVLKELQATDKKLGRKPCAQRRFIVIegLYKNLGTIAPLDEIVALKHKYKYRLILDESFSFGTL 409
                  55555555544.899***********6544433333389999999****99***************99976554444301456789***************************976 PP

  == domain 2    score: 2.5 bits;  conditional E-value: 0.035
    TIGR03301 240 vvaAlaqAleeleaeggvearle.....rykrnaellvd...glralGleplleeeiqspiivsfkspddpdfd...Fdklyqelkerg 317
                  +  A+  Al++le+  ++  rl+      y+r  e++++      + G++ ++ ++++spi+v  + ++ + ++      +  e+ +rg
  MMETSP1061-20121228|47526_1 473 TSSATVAALRQLEERPELVQRLQsnvryTYQRLLEKVEEhngTNTKKGFNLVVTSDSRSPIVVLQLERE-SVYEsaiMSGIMRECLQRG 560
                  44577777777777777777765333123566666665411134678**************99877776.7777222234555555665 PP

>> TIGR03576  pyridox_MJ0158: pyridoxal phosphate enzyme, MJ0158 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   1.7e-05    0.0076     208     283 ..     440     522 ..     417     555 .. 0.73

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 1.7e-05
    TIGR03576 208 GPrgGllaGkkelvdkikseaekfGleaqaP..llaavvraleefel.erlrdalkrk.eeldlrllekle...vertptGfv 283
                  G  gG+ +G++e+vd+ ++ + ++ + a aP  +  a v al++ e   +l ++l+ +    ++rllek+e     +t  Gf 
  MMETSP1061-20121228|47526_1 440 GSVGGVSVGNEEVVDHQRLSGAGYCFSASAPpfTSSATVAALRQLEErPELVQRLQSNvRYTYQRLLEKVEehnGTNTKKGFN 522
                  7789************************9993334578889998874135666665541556888888766322556666764 PP

>> TIGR01328  met_gam_lyase: methionine gamma-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.7   0.0   4.1e-05     0.019      64     109 ..     275     320 ..     266     360 .. 0.86
   2 ?   -2.4   0.0      0.75   3.4e+02     214     256 ..     442     484 ..     432     512 .. 0.78

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.1e-05
    TIGR01328  64 lerriaelegaeaavatasGmgaiaatllsllkagdevisdetlyG 109
                  +e+ +a + +++ a+ ++ G ++ ++t+ ++ k gd +++de++y 
  MMETSP1061-20121228|47526_1 275 VEEEMAGFCKTDQAILYSDGASTCTSTVAAFAKRGDLLVVDEGVYE 320
                  68999****************************************6 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.75
    TIGR01328 214 vaGvliGdaellqrirlvgvkdltGavispfdaflvlrGlktl 256
                  v+Gv +G+ e +++ rl g      a   pf++   +  l+ l
  MMETSP1061-20121228|47526_1 442 VGGVSVGNEEVVDHQRLSGAGYCFSASAPPFTSSATVAALRQL 484
                  8999999999999999999888877777888776666666655 PP

>> TIGR01324  cysta_beta_ly_B: cystathionine beta-lyase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.1   0.0   0.00011      0.05      51     102 ..     271     322 ..     245     333 .. 0.81

  Alignments for each domain:
  == domain 1    score: 10.1 bits;  conditional E-value: 0.00011
    TIGR01324  51 ttvalqdalaeleGaagvilyPsGlaavtnallafvkaGdevlvvdsaykPt 102
                   +  +++ +a +  + ++ily  G ++ t+++ af k Gd ++v + +y+P 
  MMETSP1061-20121228|47526_1 271 VHLQVEEEMAGFCKTDQAILYSDGASTCTSTVAAFAKRGDLLVVDEGVYEPL 322
                  345556666777777889********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (622 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       285  (0.0694783); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        24  (0.0058508); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.46u 0.17s 00:00:00.63 Elapsed: 00:00:00.37
# Mc/sec: 2218.84
//
Query:       MMETSP1061-20121228|47537_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 361.23
//
Query:       MMETSP1061-20121228|47543_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 837.84
//
Query:       MMETSP1061-20121228|47552_1  [L=327]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (327 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       154  (0.0375427); expected 82.0 (0.02)
Passed bias filter:                      137  (0.0333983); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.18s 00:00:00.39 Elapsed: 00:00:00.25
# Mc/sec: 1726.42
//
Query:       MMETSP1061-20121228|47549_1  [L=1601]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1601 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       563  (0.13725); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 1.08u 0.17s 00:00:01.25 Elapsed: 00:00:00.67
# Mc/sec: 3153.95
//
Query:       MMETSP1061-20121228|47565_1  [L=32]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (32 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        16  (0.00390054); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 201.13
//
Query:       MMETSP1061-20121228|47589_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.7e-09   34.5   0.1    0.00033   18.5   0.0    3.1  3  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.4   0.0   0.00013      0.52       7      25 ..      16      34 ..      12      38 .. 0.90
   2 !    4.2   0.0    0.0028        12       6      24 ..      44      62 ..      40      63 .. 0.89
   3 !   18.5   0.0   8.1e-08   0.00033       2      24 ..      72      94 ..      71      95 .. 0.94

  Alignments for each domain:
  == domain 1    score: 8.4 bits;  conditional E-value: 0.00013
    TIGR00756  7 isglckagrveeAlelfde 25
                 i+ +++ ++ + Alel+++
  MMETSP1061-20121228|47589_1 16 IRVCGNVNDHDLALELYNK 34
                 99***************97 PP

  == domain 2    score: 4.2 bits;  conditional E-value: 0.0028
    TIGR00756  6 lisglckagrveeAlelfd 24
                  is l+   ++++A++l++
  MMETSP1061-20121228|47589_1 44 AISVLGSCDQLSKAVDLLQ 62
                 6999*************97 PP

  == domain 3    score: 18.5 bits;  conditional E-value: 8.1e-08
    TIGR00756  2 tyntlisglckagrveeAlelfd 24
                 ++n+ i +++ka+++e Al++++
  MMETSP1061-20121228|47589_1 72 SFNAAIAACGKAKNWELALDIYQ 94
                 89*******************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 556.65
//
Query:       MMETSP1061-20121228|47604_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        23  (0.00560702); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|47613_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 339.40
//
Query:       MMETSP1061-20121228|47607_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.59
# Mc/sec: 827.73
//
Query:       MMETSP1061-20121228|47623_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-21   74.4   0.1    2.3e-21   74.3   0.1    1.0  1  TIGR00687 pyridox_kin: pyridoxal kinase
      4e-10   37.2   0.0    4.3e-10   37.1   0.0    1.0  1  TIGR00097 HMP-P_kinase: phosphomethylpyrimidine kinase
    2.7e-05   21.5   0.0    2.9e-05   21.4   0.0    1.0  1  TIGR02152 D_ribokin_bact: ribokinase


Domain annotation for each model (and alignments):
>> TIGR00687  pyridox_kin: pyridoxal kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.3   0.1   1.7e-24   2.3e-21     103     173 ..       2      71 ..       1      72 [] 0.96

  Alignments for each domain:
  == domain 1    score: 74.3 bits;  conditional E-value: 1.7e-24
    TIGR00687 103 anPqalYvCDPvmgdkkkgvvvaedlaevlvekaiPvaDiitPnlfelelLterkvetleealaaadaLia 173
                  +nP+a +vCDPv+gd  +  +v+ +l ev+ + +iP aD++tPn+fe e+Lt+ kve++++a  a +aL+a
  MMETSP1061-20121228|47623_1   2 HNPNARFVCDPVLGDDGR-FYVPSELVEVYKNVVIPKADVVTPNQFETEQLTGIKVESIADARNACEALHA 71 
                  69*************987.79************************************************98 PP

>> TIGR00097  HMP-P_kinase: phosphomethylpyrimidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.1   0.0   3.2e-13   4.3e-10      96     160 ..       7      70 ..       2      72 .] 0.93

  Alignments for each domain:
  == domain 1    score: 37.1 bits;  conditional E-value: 3.2e-13
    TIGR00097  96 klvvDpVmvaksgakLleeeavealkkkllplatlvtPNlpEaeallgvkikteedlkkaakkla 160
                  + v DpV+    g   + +e ve+ k+ ++p+a++vtPN  E e l+g+k+++ +d+++a ++l+
  MMETSP1061-20121228|47623_1   7 RFVCDPVL-GDDGRFYVPSELVEVYKNVVIPKADVVTPNQFETEQLTGIKVESIADARNACEALH 70 
                  6799**96.899*************************************************9997 PP

>> TIGR02152  D_ribokin_bact: ribokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.4   0.0   2.1e-08   2.9e-05     169     209 ..      31      71 ..      21      72 .] 0.90

  Alignments for each domain:
  == domain 1    score: 21.4 bits;  conditional E-value: 2.1e-08
    TIGR02152 169 deellslvdiivpNetEaeiLtgievedledaekaaeklle 209
                  ++ ++ ++d+++pN+ E+e+Ltgi+ve+++da++a e+l++
  MMETSP1061-20121228|47623_1  31 KNVVIPKADVVTPNQFETEQLTGIKVESIADARNACEALHA 71 
                  56678999****************************99986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 452.53
//
Query:       MMETSP1061-20121228|47633_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 356.37
//
Query:       MMETSP1061-20121228|47650_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.10s 00:00:00.19 Elapsed: 00:00:00.19
# Mc/sec: 437.65
//
Query:       MMETSP1061-20121228|47668_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.10s 00:00:00.20 Elapsed: 00:00:00.17
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|47672_1  [L=506]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   5.6e-148  491.1   0.8   6.4e-148  490.9   0.5    1.0  1  TIGR01804 BADH: betaine aldehyde dehydrogenase
   9.8e-137  454.3   0.3   1.2e-136  454.0   0.2    1.0  1  TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
     7e-123  408.6   0.8     8e-123  408.4   0.6    1.0  1  TIGR03216 OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   3.5e-106  353.7   0.5     4e-106  353.5   0.3    1.0  1  TIGR03374 ABALDH: 1-pyrroline dehydrogenase
    2.6e-97  324.3   0.3    3.1e-97  324.1   0.2    1.0  1  TIGR01780 SSADH: succinate-semialdehyde dehydrogenase
    1.3e-74  249.7   0.7    1.7e-74  249.2   0.5    1.0  1  TIGR01237 D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
    7.6e-66  220.5   0.2    9.5e-66  220.2   0.2    1.0  1  TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
    4.3e-63  211.4   0.0    5.5e-63  211.0   0.0    1.0  1  TIGR03250 PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
    7.7e-62  207.4   0.4    9.5e-62  207.1   0.3    1.0  1  TIGR03240 arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
    7.5e-52  174.3   0.1    9.8e-52  173.9   0.1    1.0  1  TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
    7.4e-46  154.7   0.0    9.3e-46  154.3   0.0    1.0  1  TIGR01236 D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
      3e-31  106.2   0.1    9.5e-31  104.5   0.1    1.6  1  TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN
    4.2e-09   33.0   1.8    1.6e-07   27.8   1.3    2.4  1  TIGR02288 PaaN_2: phenylacetic acid degradation protein paaN
    5.1e-06   23.4   0.0    0.00028   17.7   0.0    2.9  2  TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase
    8.3e-06   22.7   0.1    1.2e-05   22.2   0.1    1.2  1  TIGR02518 EutH_ACDH: acetaldehyde dehydrogenase (acetylating)


Domain annotation for each model (and alignments):
>> TIGR01804  BADH: betaine aldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  490.9   0.5  2.3e-150  6.4e-148       1     467 []      22     492 ..      22     492 .. 0.96

  Alignments for each domain:
  == domain 1    score: 490.9 bits;  conditional E-value: 2.3e-150
    TIGR01804   1 fidGeyveaeagkvleiinPanqeviaevaeatredvekaiaaarraqgewaalsalergrilrriaellrkkneelakletldtGkaleetlvadiddiadvleffaGladkleGeiielgipsfakvrreplGvvvgigawnyPlliaswksaPalaaGnalvlkPseitPltalkvaelleeaGlPkGvfnvvlGkgaevGeelvehkdvakvsltGgvetGkkimaaaaeelkkvtlelGGksPlivfdd..ad....lelavdqallanffsaGqvcsnGtrvlvekkikekflaklvervkkiklGdgfdeetelGPlisaehrdkvlkyiekgkeegaklaiGGkvpeee.eldeGffiePtvfadvtddmtivreeifGPvlsvlefeseeevikrandteyGlaagvftadleraervaerlkaGtvwindynlspaevPfGGykqsGiGrengvaaleeytevk 467
                  fi+G++ve  +g+ +    P+++e + e+  +++ed+e+a+ aa+ a+g w ++s  er+ +l +ia+ + ++ e+la  et d Gka++etl ad+  +ad + +faG + ++eG+i e+ +++ a+  +eplGvv++i +wn+Pll+a+wk+aPalaaGn++vlkP+e tP++ l ++e + +  lP G +n+v+G gae G++l++   +ak+++tG+ + G +im+ aae++   t elGGksP++ f+d  a     +  a+++a+la +f+ G vc+  +r+lv+++i ++f+ak++er+k+ik G+++d +t +G   s e+ dk+l y+++g+eega++++GG+v + + e++ G +i Pt++   t+dm++ +eeifGPv+sv +f++eee+++ andte+Gl agv+t+d + a r+   ++aG vw+n y+l+pa++ fGGyk+sG+Gre  ++ le+y++ k
  MMETSP1061-20121228|47672_1  22 FINGQWVEPIKGQYFTNHTPVTGEAVCEIPRSSAEDIEAALDAAHAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETLAADVPLMADHFRYFAGCIRAQEGSIGEIDETTVAYHFHEPLGVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECIGDL-LPAGTLNIVNGFGAEAGQALASSTRIAKIAFTGSTPVGSHIMKCAAENIIPSTTELGGKSPNVYFNDvmAQedefVSKAIEGAVLA-YFNQGEVCTCPSRLLVQEDIADEFIAKVIERAKQIKRGNPLDTDTMVGAQASQEQYDKILGYMDIGREEGAEILMGGGVEKLDgEYGSGYYIMPTLIKG-TNDMRVFQEEIFGPVVSVTTFKDEEEALAIANDTEFGLGAGVWTRDTNLAYRMGRGIQAGRVWMNCYHLYPAHAAFGGYKKSGVGRETHKMMLEHYQQTK 492
                  9***********************************************************************************************************************************************************************************999876.9****************************************************************995444112234566666654.7899***************************************************************************9976379*********9976.678**********************************************************************************************987 PP

>> TIGR02299  HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  454.0   0.2  4.3e-139  1.2e-136       3     479 ..      21     499 ..      19     504 .. 0.95

  Alignments for each domain:
  == domain 1    score: 454.0 bits;  conditional E-value: 4.3e-139
    TIGR02299   3 hlidGelvasesgetfetlsPadnevlasvakGgaedvdkavkaakkafkkwaelkaaerkklllkladliekhadeiavlesldtGqalrlvr.kavaraaenfrffadkaeeakdgetlpvd.eflnytvrvpvGvvglitPwnaPfmlstwkiaPalaaGntvvlkpaelsPltaarlaelvkeaglPdGvlnlvhGfGeeaGkalvehpavkavsfvGetatGsaimrngadtlkrlslelGGksPvivfdda....d..leraldavvfmifslnGerctassrllvqesiaedfveklkervkairvGdPldeetevGPlikeehlakvlsylevaekeGatilvGgkkakevldkelsrGnyvaPtvlvdadnkmriaqeeifGPvltvipfkdeeealelandieyGlagyvwtedvgralrvaaaleaGmiyvnsenvrdlrtPfGGvkasGigreGGdysfdfytetknvavalg 479
                   +i+G++v+  +g++f + +P++ e++ ++ + +aed+++a +aa++a  +w+ ++  er  +llk+ad ie++ + +av e+ d G+a+r +  + v+  a+ fr+fa  ++ a++g+  + d + + y  + p+Gvvg i Pwn P+++++wkiaPalaaGnt+vlkpae +P++   l e++ +  lP G ln+v+GfG eaG+al     +  ++f+G+t  Gs im+ +a+++     elGGksP + f+d     d  + +a++ +v   f + Ge ct+ srllvqe+ia++f+ k+ er+k+i+ G+Pld +t vG   ++e ++k+l+y++++++eGa+il+Gg   k  ld e ++G y++Pt++ +++  mr+ qeeifGPv++v +fkdeeeal +and+e+Gl + vwt+d++ a+r+   ++aG +++n       ++ fGG k+sG+gre  +  ++ y +tkn+ v+ +
  MMETSP1061-20121228|47672_1  21 NFINGQWVEPIKGQYFTNHTPVTGEAVCEIPRSSAEDIEAALDAAHAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETLaADVPLMADHFRYFAGCIR-AQEGSIGEIDeTTVAYHFHEPLGVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECIGD-LLPAGTLNIVNGFGAEAGQALASSTRIAKIAFTGSTPVGSHIMKCAAENIIPSTTELGGKSPNVYFNDVmaqeDefVSKAIEGAVLAYF-NQGEVCTCPSRLLVQEDIADEFIAKVIERAKQIKRGNPLDTDTMVGAQASQEQYDKILGYMDIGREEGAEILMGGGVEK--LDGEYGSGYYIMPTLIKGTN-DMRVFQEEIFGPVVSVTTFKDEEEALAIANDTEFGLGAGVWTRDTNLAYRMGRGIQAGRVWMNCYHLYPAHAAFGGYKKSGVGRETHKMMLEHYQQTKNMLVSYS 499
                  69****************************************************************************************9876489************9777.899999999978999********************************************************87.59****************************************************************98522222336799999998755.78************************************************************************98765..599************99986.9***************************************************************************************************99875 PP

>> TIGR03216  OH_muco_semi_DH: 2-hydroxymuconic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  408.4   0.6  2.9e-125    8e-123       3     479 ..      21     496 ..      19     498 .. 0.95

  Alignments for each domain:
  == domain 1    score: 408.4 bits;  conditional E-value: 2.9e-125
    TIGR03216   3 nfidGafv..esektfedispvdgkviaevaeagkeevdaavkaaraalkgewgklsvaeraellkkvadeierrfdeflaaevadtGkpkslaskldiprgaanfrvfadvvknvateafematpdGkealnyavrkplGvvgvispwnlplllltwkvapalacGntvvvkpseetpatatllaevmeevGvpkGvynvvhGfGpdsaGefltrhpdvdaitftGetrtGeaimkaaadgvkevslelGGknaaivfada..d....ldaavegvlrsaflntGqvclgtervyverpifdrfvaalkekaeklklGvpedeaaelGpliskehrdkvlsyyklaveeGatvvtGGGvpelgdelaeGayvqptiwtglpdsarvvkeeifGpvchvapfdseeeviarandtayGlaasvwtedlsrahrvakklevGvvwvnswflrdlrtpfGGsklsGiGreGGvhslefytelknvcv 479
                  nfi+G++v   +++ f++++pv+g+ ++e+  +++e+++aa+ aa+aa kg wg +sv er+ +l k+ad ie+  + +  ae  d Gk +  +   d+p  a  fr fa  ++  +  + e +    ++++ y   +plGvvg i pwn+pll+ +wk+apala Gnt+v+kp+e+tp +  +l e + +  +p+G  n+v+GfG + aG+ l++   +  i+ftG t  G+ imk aa+ + + + elGGk + + f d+  +    + +a+eg + + + n G+vc +  r+ v+  i d+f+a++ e+a+++k G p d ++ +G+  s+e  dk+l+y +  +eeGa++++GGGv +l  e+ +G y+ pt+  g + + rv +eeifGpv  v+ f  eee++a andt++Gl a vwt+d + a+r+ + +++G vw+n+++l    ++fGG k+sG+Gre     le y ++kn++v
  MMETSP1061-20121228|47672_1  21 NFINGQWVepIKGQYFTNHTPVTGEAVCEIPRSSAEDIEAALDAAHAA-KGAWGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETLAADVPLMADHFRYFAGCIRAQEGSIGEID----ETTVAYHFHEPLGVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECIGDL-LPAGTLNIVNGFGAE-AGQALASSTRIAKIAFTGSTPVGSHIMKCAAENIIPSTTELGGKSPNVYFNDVmaQedefVSKAIEGAVLA-YFNQGEVCTCPSRLLVQEDIADEFIAKVIERAKQIKRGNPLDTDTMVGAQASQEQYDKILGYMDIGREEGAEILMGGGVEKLDGEYGSGYYIMPTLIKGTN-DMRVFQEEIFGPVVSVTTFKDEEEALAIANDTEFGLGAGVWTRDTNLAYRMGRGIQAGRVWMNCYHLYPAHAAFGGYKKSGVGRETHKMMLEHYQQTKNMLV 496
                  9*******6557899******************************987.789**************************************************************9988887765....46799*******************************************************9987.9************86.8*************************************************996332222245788887765.5699*********************************************************************************************9975.689************************************************************************************************987 PP

>> TIGR03374  ABALDH: 1-pyrroline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  353.5   0.3  1.5e-108    4e-106       5     471 ..      22     496 ..      18     497 .. 0.93

  Alignments for each domain:
  == domain 1    score: 353.5 bits;  conditional E-value: 1.5e-108
    TIGR03374   5 liegklvag.egekqavynpatgevileiaeasaeqvdaavraadaafaewgqttpkaraelllkladaieenaevfaklesrncgkplhavlndeipaivdvfrffagaarclsglaageyleghtsmirrdpvgvvasiapwnyplmmaawklapalaagncvvlkpseitpltalklaelakdilpagvvnvlfgrgktvgdaltghekvrmvsltgsiatgehilahtaasikrthmelggkapvivfdd..adida.vvegvr..tfgfynagqdctaacriyaqrgiydelveklgkavatlkigapedestelgplsslahlervsaaveeakalshikvitgg.ekvk...gkgyyfaptllagakqddaivqkevfgpvvsitvfddeeqvvrwandsryglassvwtkdvgrahrlsarlqygctwvnthfmlvsemphggqklsgygkdmslygledytvvrhimv 471
                  +i+g+ v+  +g+  + + p tge + ei+++sae+++aa+ aa+aa   wg  +   r+ +llk+ad ieen e +a  e+ + gk +  +l  ++p ++d fr+fag+ r+ +g+  ge  e   +    +p+gvv  i pwn+pl+maawk+apalaagn +vlkp+e+tp++ l l e + d+lpag +n++ g g++ g+al+   ++  +++tgs   g+hi++ +a  i  +  elggk+p + f+d  a+ d+ v + +    + ++n g+ ct+  r+ +q  i de++ k+ +    +k g+p d  t +g  +s+ + +++ ++++  +  +   ++ gg ek +   g+gyy  ptl+ g+ +d  + q+e+fgpvvs+t+f dee+ +  and+++gl + vwt+d   a+r+   +q g  w+n + +  +    gg k+sg g++     le y   + ++v
  MMETSP1061-20121228|47672_1  22 FINGQWVEPiKGQYFTNHTPVTGEAVCEIPRSSAEDIEAALDAAHAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETLAADVPLMADHFRYFAGCIRAQEGS-IGEIDETTVAYHFHEPLGVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECIGDLLPAGTLNIVNGFGAEAGQALASSTRIAKIAFTGSTPVGSHIMKCAAENIIPSTTELGGKSPNVYFNDvmAQEDEfVSKAIEgaVLAYFNQGEVCTCPSRLLVQEDIADEFIAKVIERAKQIKRGNPLDTDTMVGAQASQEQYDKILGYMDIGREEGAEILMGGGvEKLDgeyGSGYYIMPTLIKGT-NDMRVFQEEIFGPVVSVTTFKDEEEALAIANDTEFGLGAGVWTRDTNLAYRMGRGIQAGRVWMNCYHLYPAHAAFGGYKKSGVGRETHKMMLEHYQQTKNMLV 496
                  68898887538999999*************************************************************************************************997.69************************************************************************************************************************************993333333255666422689****************************************************************999887666666653565522368*******99886.6889*******************************************************************************************98887766 PP

>> TIGR01780  SSADH: succinate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.1   0.2   1.1e-99   3.1e-97       3     448 .]      40     492 ..      38     492 .. 0.92

  Alignments for each domain:
  == domain 1    score: 324.1 bits;  conditional E-value: 1.1e-99
    TIGR01780   3 nPatGekigkvpevsveeveeaieaaeealktykeltakerakllrkwyelilenkddlaklltlenGkplkea.kgevlyaasyleWfaeeakrvyGdviaslqsdkrllvikqPvGvaaiitPWnfPaamitrkagaalaaGctvvvkPaeqtPlsalalarlaekaGvPkgvlnvvtssaeevGkvltssPlvrkvsftGstavGkillkqsastvkkvslelGGnaPlivfddad......ldqavegalaskfrnagqtcvcanrlyvhesvydefakklaekvkklkvGdGldegvtvGplinekavekvekhiedavekGakvvvgG..dkre.ek.ggnffePtvlsdvtadmlvakeetfGPlapvfkfddeeevvalandtevGlaayffskdlakiirvaeelevGlvgvntglisevvipfGGvkesGlGregskyGieeylevk 448
                   P tGe + ++p+ s+e++e+a++aa+ a  ++  +++ er+ +l k+++ i en + la   t +nGk+++e+  ++v   a ++++fa   +   G++    ++       ++P+Gv++ i PWnfP  m + k ++alaaG t+v+kPaeqtP+s l l +      +P+g+ln+v + + e G+ l+ss  + k++ftGst+vG  ++k +a+++   + elGG++P + f+d+       + +a+ega+ + f n g +c c+ rl+v+e++ def++k+ e+ k++k G+ ld ++ vG+  +++  +k+   ++   e+Ga++++gG  +k + e   g+++ Pt++ + t+dm+v +ee fGP+++v +f+deee++a+andte+Gl a ++++d++  +r+++ ++ G v +n   +  ++++fGG k+sG+Gre+ k+ +e+y ++k
  MMETSP1061-20121228|47672_1  40 TPVTGEAVCEIPRSSAEDIEAALDAAHAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETlAADVPLMADHFRYFAGCIRAQEGSI-GEIDETTVAYHFHEPLGVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECIG-DLLPAGTLNIVNGFGAEAGQALASSTRIAKIAFTGSTPVGSHIMKCAAENIIPSTTELGGKSPNVYFNDVMaqedefVSKAIEGAVLAYF-NQGEVCTCPSRLLVQEDIADEFIAKVIERAKQIKRGNPLDTDTMVGAQASQEQYDKILGYMDIGREEGAEILMGGgvEKLDgEYgSGYYIMPTLI-KGTNDMRVFQEEIFGPVVSVTTFKDEEEALAIANDTEFGLGAGVWTRDTNLAYRMGRGIQAGRVWMNCYHLYPAHAAFGGYKKSGVGRETHKMMLEHYQQTK 492
                  699********************************************************************9973679************9877777765.566677788899***********************************************9998654.569*************************************************************99988532222336688888887655.78************************************************************************955444413314678889876.5689**********************************************************************************************9887 PP

>> TIGR01237  D1pyr5carbox2: putative delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  249.2   0.5   6.3e-77   1.7e-74      32     490 ..      18     478 ..      13     494 .. 0.87

  Alignments for each domain:
  == domain 1    score: 249.2 bits;  conditional E-value: 6.3e-77
    TIGR01237  32 dyplvinGeevetea..kidsinpadksevvGkvakasvedaeqalqaakkafeewkktdveeraaillkaaailkrrrhelsallvlevGkiyaea.daevaeaidfleyyaremiklakskevlsieGeknrylyiplGvavvispwnfplailvGmtvapivtGncvvlkpaeaatviaaklveileeaGlpkGvlqfvpGkGsevGeylvdhpktrlitftGsrevGlriyedaakvqpGqkhlkrviaelGGk......davivdesadieqavaaavtsafGfaGqkcsaasrvvvlekvydevverfveatkslkvgktdeadvqvgpvidqksfdkikeyielgkaeg.klvlg.....gedddskGyfikptifkdvdrkarlaqeeifGpvvavlrakdfdealeiansteygltGgvisnsrerierakaefevGnlyfnrkitGaivgvqpfGGfkmsGtds 490
                   y  +inG+ ve  +  + +   p  + e+v ++ + s ed e al+aa++a  +w  ++v er+++llk a+ +++    l+   + + Gk + e+  a+v    d ++y+a  +   ++++     e     +++ plGv   i pwnfpl +++   + ++ +Gn++vlkpae+++v    l+e + +  lp+G l+ v G G e G+ l + +++  i+ftGs  vG +i++ aa        +    +elGGk      + v+  e+  + +a+++av + f  +G+ c+  sr++v e++ de++ +++e++k  k g++ ++d+ vg+   q+ +dki +y+++g++eg ++++g       ++   Gy+i pt++k  + + r+ qeeifGpvv+v   kd +eal ian+te+gl  gv ++  +   r     + G +++n  +     ++  fGG+k sG++ 
  MMETSP1061-20121228|47672_1  18 RYGNFINGQWVEPIKgqYFTNHTP-VTGEAVCEIPRSSAEDIEAALDAAHAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETlAADVPLMADHFRYFAGCIRA-QEGSIGEIDETTVAYHFHEPLGVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECIGD-LLPAGTLNIVNGFGAEAGQALASSTRIAKIAFTGSTPVGSHIMKCAAE------NIIPSTTELGGKspnvyfNDVMAQEDEFVSKAIEGAVLAYF-NQGEVCTCPSRLLVQEDIADEFIAKVIERAKQIKRGNPLDTDTMVGAQASQEQYDKILGYMDIGREEGaEILMGggvekLDGEYGSGYYIMPTLIKGTN-DMRVFQEEIFGPVVSVTTFKDEEEALAIANDTEFGLGAGVWTRDTNLAYRMGRGIQAGRVWMN--CYHLYPAHAAFGGYKKSGVGR 478
                  68899******9754114444444.47899***********************************************9999999999******998736899***********86655.546666666677777899*****************999999999*****************99999998765.6*******************************************9995......34445678888844444456788889999999999998766.58*****************************************************************84566664222112345689********9975.689**********************************************************98..5566778899********986 PP

>> TIGR01722  MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  220.2   0.2   3.5e-68   9.5e-66       3     456 ..      21     479 ..      19     497 .. 0.90

  Alignments for each domain:
  == domain 1    score: 220.2 bits;  conditional E-value: 3.5e-68
    TIGR01722   3 hlidGkfvegksdkyipvsnpatnevlakvaeasaeevdaavasaretfaawaetsvaerarvllryqallkehrdeiaklisaeqGktledak.GdvarGlevvehacsvtslllGetvesvakdvdvysirqplGvvaGitpfnfpamiplwmfplaiacGntfvlkpsekvpsaavklaellseaGapdGvlnvvhG.dkeavdrllehpdvkavsfvGsvavgeyiyetgsahgkrvqalaGaknhmvvlpd..adkeaaldalvga...avGaaGqrcmaisaavlvGaa.kelveeireraekvrvgagddpgaelGplitkqakervasliasgakeGaevlldGrgykveG.yeeGnfvGitllervkpdmkiykeeifGpvlvvleadtleeaiklinespyGnGtaiftsdGaaarkfqheievGqvGvnvpipvplpffsftGwkdslfGdl 456
                   +i+G+ ve   ++y   + p+t+e +++++ +sae+++aa+ +a+ +  aw+  sv er+ vll+    ++e+++ +a   + ++Gk++ ++   dv    +   +  +      G  + ++ +    y ++ plGvv  i p+nfp ++  w    a+a Gnt vlkp+e+ p + + l e + +  +p G+ln+v G + ea + l     +  ++f Gs++vg +i + ++ +     +  G k   v + d  a+ ++ +++++     a+   G+ c   s  ++  ++ +e++ ++ era++++ g   d+ + +G   ++++ +++  +++ g +eGae+l+ G   k++G y  G ++ +tl+++   dm++++eeifGpv+ v      eea+++ n++ +G G+ ++t+d   a +    i++G+v +n     p    +f+G+k+s  G  
  MMETSP1061-20121228|47672_1  21 NFINGQWVEPIKGQYFTNHTPVTGEAVCEIPRSSAEDIEAALDAAHAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETLaADVPLMADHFRYFAGCIRAQEGS-IGEIDETTVAYHFHEPLGVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECIGDL-LPAGTLNIVNGfGAEAGQALASSTRIAKIAFTGSTPVGSHIMKCAAENIIPSTTELGGKSPNVYFNDvmAQEDEFVSKAIEGavlAYFNQGEVCTCPSRLLVQEDIaDEFIAKVIERAKQIKRGNPLDTDTMVGAQASQEQYDKILGYMDIGREEGAEILMGGGVEKLDGeYGSGYYIMPTLIKGT-NDMRVFQEEIFGPVVSVTTFKDEEEALAIANDTEFGLGAGVWTRDTNLAYRMGRGIQAGRVWMNCYHLYPA-HAAFGGYKKSGVGRE 479
                  59**************************************************************************************988775268877666666555554444565.5678888889****************************************************9999885.9**********66788999999*****************************************999966678888888876512245678*****999887766655**************************************************************9889**********985.79**************************************************************9988885.679*****9988854 PP

>> TIGR03250  PhnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  211.0   0.0     2e-65   5.5e-63      20     452 ..      37     479 ..      23     497 .. 0.88

  Alignments for each domain:
  == domain 1    score: 211.0 bits;  conditional E-value: 2e-65
    TIGR03250  20 evrepydgevvgtvpkasvedvrralevaaayrs...kltryerskileraaellaarkeeisdlitlesGlskkdsl.yevgrvadvlklaaaevlrddgqifscdltphgkkrkvftlrepllgvisaitpfnhplnqvahkvapaiatnnrvvlkpsekvplsallladllyeaGlpeemlqvvtGdpreiadelitdehvdlvtftGgvaiGkliaakagyk..ravlelGGndplivled..adldraadlavkGs...yknsGqrctavkrilvqesvadrftellvektralkyGdpldrsvdlGtvideaaaklfeerveeavaeGarlllg........nkrdGalyaptvldrvdpelalvreetfGpvspvirfkdiddairisnstayglssgvctnrldaitkliaelevGtvnvwevpGyrleltpfGGikdsGlGyk 452
                    ++p +ge v+++p++s+ed+ +al+ a+a +    +++  ers +l + a+ + ++ e ++   t + G + +++l  +v  +ad +++ a  +  ++g i   d t+       +  +epl gv+  i p+n pl + a k+apa+a+ n +vlkp+e++p+s l+l++ + +  lp   l++v G  +e +++l ++  +  ++ftG+ ++G +i + a+ +      elGG  p + ++d  a+ d+  + a++G+   y n G+ ct   r+lvqe +ad+f+  ++e+++++k G+pld  + +G+   ++   ++   ++  ++eGa++l+g        +  +G    pt+++  ++++++ +ee fGpv+ v +fkd ++a++i+n t++gl +gv t +++   ++ + ++ G v +     y    + fGG k sG+G  
  MMETSP1061-20121228|47672_1  37 TNHTPVTGEAVCEIPRSSAEDIEAALDAAHAAKGawgTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETLaADVPLMADHFRYFAGCIRAQEGSIGEIDETTV-----AYHFHEPL-GVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECIGD-LLPAGTLNIVNGFGAEAGQALASSTRIAKIAFTGSTPVGSHIMKCAAENiiPSTTELGGKSPNVYFNDvmAQEDEFVSKAIEGAvlaYFNQGEVCTCPSRLLVQEDIADEFIAKVIERAKQIKRGNPLDTDTMVGAQASQEQYDKILGYMDIGREEGAEILMGggvekldgEYGSGYYIMPTLIK-GTNDMRVFQEEIFGPVVSVTTFKDEEEALAIANDTEFGLGAGVWTRDTNLAYRMGRGIQAGRVWMNCYHLYPA-HAAFGGYKKSGVGRE 479
                  56789************************9998622268899*******************************99997358*************9999*****99999986.....5899***9.6**********************************************9976.6*****************************************9888766115689*************887888888889998544489************************************************999999999999************973332111122345556788875.6789*********************************************************998876666654.678*********964 PP

>> TIGR03240  arg_catab_astD: succinylglutamic semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.1   0.3   3.5e-64   9.5e-62       2     450 ..      22     478 ..      21     484 .. 0.89

  Alignments for each domain:
  == domain 1    score: 207.1 bits;  conditional E-value: 3.5e-64
    TIGR03240   2 fidGkwraG.qGeslesldpvtqevlwqgkaasaaqvekavkaarkafpawarlsleeriavvkrfaelleeekeelaeviaketgkplwea.rtevasmvakvaisikayeertGekeseladakavlrhrphGvlavfGpynfpGhlpnGhivpallaGntvvfkpseltplvaeetvklwekaGlpaGvlnlvqG.aretGkalaaeedidGllftGssntGallhrqlagrpekilalelGGnnplvv.ee.vkdidaavhlivqsa...fisaGqrctcarrllvkdgaeGdallerlvevaerltvgkydaepqpflGavisekaakellaaqekllalggkslle..lkqleeeaa...lltpgiidvtevaevpdeeyfgpllkvlrykdfdealaeanntrfGlaaGllsddrelydkflleiraGivnwnkpltGassaapfGGiGasGnhr 450
                  fi+G+w +  +G+ ++++ pvt+e++ +   +sa+++e+a+ aa +a  aw+++s+ er  v+ + a+++ee+ e+la + + + gk++ e+ +++v  m+        + + + G+  +   ++ a   h p Gv+  + p+nfp  +   +i pal aGnt+v+kp+e tp++   ++++  +  lpaG ln+v+G + e+G+ala+++ i  + ftGs+  G ++ +  a++  +  + elGG  p v  ++ ++  d  v ++++ a   +   G  ctc  rllv+++   d ++++++e a++++ g+   +++ ++Ga  s++  +++l   +   ++g++ l+   +++l+ e +   ++ p++i  t+   v  ee fgp+++v+ +kd +eala+an+t+fGl aG+ + d++l  ++ + i+aG v w +      + a fGG  +sG  r
  MMETSP1061-20121228|47672_1  22 FINGQWVEPiKGQYFTNHTPVTGEAVCEIPRSSAEDIEAALDAAHAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETlAADVPLMADHFRYFAGCIRAQEGSIGEIDETTVAYHFHEPLGVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECIGD-LLPAGTLNIVNGfGAEAGQALASSTRIAKIAFTGSTPVGSHIMKCAAEN-IIPSTTELGGKSPNVYfNDvMAQEDEFVSKAIEGAvlaYFNQGEVCTCPSRLLVQED-IADEFIAKVIERAKQIKRGNP-LDTDTMVGAQASQEQYDKILGYMDIGREEGAEILMGggVEKLDGEYGsgyYIMPTLIKGTNDMRVFQEEIFGPVVSVTTFKDEEEALAIANDTEFGLGAGVWTRDTNLAYRMGRGIQAGRV-WMNCYHLYPAHAAFGGYKKSGVGR 478
                  9*****98549********************************************************************************94468999999999888888888888888888899999*********************************************99999999876.59**********779***************************9987754.233578*****9988523324567888999998762226679************876.6799*************9984.567789****************999999999999853366666643322379*********99********************************************************99.5555666677888***99999776 PP

>> TIGR01238  D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  173.9   0.1   3.6e-54   9.8e-52      64     483 ..      46     477 ..      23     491 .. 0.85

  Alignments for each domain:
  == domain 1    score: 173.9 bits;  conditional E-value: 3.6e-54
    TIGR01238  64 ivGqvseadaaevqeavdsavaafaewsatdakeraailerladlleshmpelvallvreaGktlsnai.aevreavdflryyakqvedv......ldeesaka........lGavvcispwnfplaiftGqiaaalaaGntviakpaeqtsliaaravellqeaG..vpagviqllpGrGedvGaaltsderiaGviftGstevarlinkalakredapvpliaetGGq..namivdstalaeqvvadvlasa...fdsaGqrcsalrvlcvqedvadrvltlikGamdelkvgkpirlttdvGpvidaeakqnllahiekmkakakkvaqv..kleddvesekgtfvaptlfe.lddldelkkevfGpvlhvvrykadeldkvvdkinakGygltlGvhsrieetvrqiekrakvGnvyvnrnlvGavvGvqpfGGeGlsGtG 483
                   v ++  ++a+++++a+d+a aa   w ++   er+ +l ++ad +e+++  l +    + Gk++++++ a+v    d  ry+a+ ++ +      +de    +        lG+v  i pwnfpl +   +ia alaaGnt++ kpaeqt++     +e +   G  +pag+++++ G G++ G al+s +ria ++ftGst v   i k  a+      p  +e GG+  n    d  a  ++ v   ++ a   +   G+ c+    l+vqed+ad+ +  +    +++k g+p    t vG    +e  +++l +++  ++ + ++     + + d e+  g ++ ptl++  +d+  +++e+fGpv+ v  +k +e +  +   n++ +gl  Gv +r  +   ++ + +++G v++n   +        fGG   sG G
  MMETSP1061-20121228|47672_1  46 AVCEIPRSSAEDIEAALDAAHAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETLaADVPLMADHFRYFAGCIRAQegsigeIDET---TvayhfhepLGVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECI---GdlLPAGTLNIVNGFGAEAGQALASSTRIAKIAFTGSTPVGSHIMKCAAENII---PSTTELGGKspNVYFNDVMAQEDEFVSKAIEGAvlaYFNQGEVCTCPSRLLVQEDIADEFIAKVIERAKQIKRGNPLDTDTMVGAQASQEQYDKILGYMDIGREEGAEILMGggVEKLDGEYGSGYYIMPTLIKgTNDMRVFQEEIFGPVVSVTTFKDEEEALAI--ANDTEFGLGAGVWTRDTNLAYRMGRGIQAGRVWMNCYHLYP--AHAAFGGYKKSGVG 477
                  56677889999*******************************************************9983589***********9887541111113333...144566666****************************************8765555544...4339******************************************9987655...5589999985577889999999999988887652226789*********************988888899*****************************999999988875411445557889999******97589********************99877655..69*************9999999999*********9765543..33457777777766 PP

>> TIGR01236  D1pyr5carbox1: 1-pyrroline-5-carboxylate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  154.3   0.0   3.4e-48   9.3e-46      58     459 ..      45     441 ..      22     495 .. 0.85

  Alignments for each domain:
  == domain 1    score: 154.3 bits;  conditional E-value: 3.4e-48
    TIGR01236  58 aklakltnateedvkkaveaaldakkeWselpfadraaiflkaadllsgkyreeilaatmlgqsktvyqaeidavaelidffrfnvkyarelleqqPsvsa.pgelnkveyrpleGfvaaisPfnftaiaanlagaPal.mGnvvvWkPsktavlsnyllmkileeaGlPpgvinfvpadgvkvsdvvladkdlaalhftGstavfkelwkkvasnldkyrnfPrivGetGGk..dfvlvhpsadveevvaatirga...feyqGqkcsaasrlyvpkslwkelkeellaelkkvkvgdvddlssfmgavideksfakivkviekakkdpeeleilaGGkydd.....skGyfvePtvveskdPkeklmkeeifGPvltvyvydddkykeilevvdstskyaltGavfakdrea 459
                  + ++++ +++ ed+++a++aa +ak  W ++ + +r+ ++lk ad +  +    + a t  +++k+v ++    v  + d fr+   +a  + +q  s+   + ++   ++    G v  i P+nf  + a    aPal  Gn++v kP++ + +s  +lm+ + +  lP+g +n+v + g++ +++  ++ ++a + ftGst+v ++++k  a+n+      P  + e GGk  +  +    a+ +e v+  i ga   +  qG  c+  srl v + + +e+ +++++++k++k g++ d  + +ga  ++++++ki  +++  +++    eil+GG +++       Gy++ Pt+++  + + ++++eeifGPv++v  ++d++  e l +  + ++++l   v ++d + 
  MMETSP1061-20121228|47672_1  45 EAVCEIPRSSAEDIEAALDAAHAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVAET-WDNGKAVRETLAADVPLMADHFRY---FAGCIRAQEGSIGEiDETTVAYHFHEPLGVVGQIIPWNFPLLMAAWKIAPALaAGNTIVLKPAEQTPVSILVLMECIGD-LLPAGTLNIVNGFGAEAGQALASSTRIAKIAFTGSTPVGSHIMKCAAENII-----PS-TTELGGKspNVYFNDVMAQEDEFVSKAIEGAvlaYFNQGEVCTCPSRLLVQEDIADEFIAKVIERAKQIKRGNPLDTDTMVGAQASQEQYDKILGYMDIGREEG--AEILMGGGVEKldgeyGSGYYIMPTLIKGTN-DMRVFQEEIFGPVVSVTTFKDEE--EALAI-ANDTEFGLGAGVWTRDTNL 441
                  45677888999************************************998876666665.6899***9998877999******8...89999999996544144455556665569***********************55*******************999987.5***********************************************996.....43.56999994455666778999999999999973224459****************************************************************76..8999999776622233579*********887.6789*****************94..77765.56789***99999999765 PP

>> TIGR02278  PaaN-DH: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  104.5   0.1   3.5e-33   9.5e-31       4     436 ..      22     449 ..      20     458 .. 0.79

  Alignments for each domain:
  == domain 1    score: 104.5 bits;  conditional E-value: 3.5e-33
    TIGR02278   4 ylsgewetgages.vevadaitGevlarvs.seGldlaaavayarevGgkalraltfheraaklkalakylserkeelyalaattGatrrdnavdidGgigtlftyaskgrrelPdadlliedelealskdgsfqgrhiltpksGvavqinafnfPvwGlleklaPaflaGvPalvkPatatayvaealvklivesgllPeGalqlivG...svgdlldhldsrdvvaftGsaataeklrahpnvleksirfsaeadslnaavlGedvtpdepefdlfvkeivreltakaGqkctairrvlvPkalveavlealkarlakvklGdPreedvklGplvsveqredveaavaallaagaevrlgd.peeld.....GaffaPtlllaeepeadavhateafGPvatllayddraeavrlaarGeGslvaslvtadpevarqfilgl 436
                  ++ g+w+++ + +  + +  +tGe++ ++  s   d++aa   a +  + a   +++ er+  l ++a  + e+ e+l            dn+  +  ++++ +   +   r +  a+ +  +e      d + ++ h   p+ Gv  qi  +nfP      k+aPa+ aG   ++kPa  t      l+  i   +llP G+l+++ G    +g  l       ++aftGs+  ++++ +    +e+ i+ ++e     + v  +dv  +e+ef   + e +       G  ct   r+lv ++  ++ +  + +r +++k G+P + d+ +G+ +s+eq +++   +++  ++gae+ +g+  e+ld     G ++ Ptl++ ++     v + e fGPv+++ +++d++ea+ +a   e  l a + t d ++a  +  g+
  MMETSP1061-20121228|47672_1  22 FINGQWVEPIKGQyFTNHTPVTGEAVCEIPrSSAEDIEAALDAA-HAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVA------ETWDNGKAVRETLAADVPLMADHFRYF--AGCIRAQEGSIGEIDETTVAYHFHEPL-GVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECI--GDLLPAGTLNIVNGfgaEAGQALASSTRIAKIAFTGSTPVGSHIMK--CAAENIIPSTTELGGKSPNVYFNDVMAQEDEFVSKAIEGAVLAYFNQGEVCTCPSRLLVQEDIADEFIAKVIERAKQIKRGNPLDTDTMVGAQASQEQYDKILGYMDIGREEGAEILMGGgVEKLDgeygsGYYIMPTLIKGTN--DMRVFQEEIFGPVVSVTTFKDEEEALAIANDTEFGLGAGVWTRDTNLAYRMGRGI 449
                  78899999966552667778999999988524455666665544.445567788999999999999999999888887533......233444444444433333333333322..222333333333346667899999997.8999********************************9987655555555..67**********99433466667777777899******99998764..5578889999**********************888888777778899*********************************************************************998625778888988999****998765..578********************************************98775554 PP

>> TIGR02288  PaaN_2: phenylacetic acid degradation protein paaN
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   1.3   5.7e-10   1.6e-07      84     489 ..      56     445 ..      33     457 .. 0.74

  Alignments for each domain:
  == domain 1    score: 27.8 bits;  conditional E-value: 5.7e-10
    TIGR02288  84 vdtdalleaakkalkgwrdaGararvgvcleilqrlnkrslelahavmhttGqafmmafqaGGphaqdrGleavayayremsripetavwekpqGkkdplklekrfeivprGialvigcstfptwntypGlfaslatGnavlvkphpgailplaltvkvarevlaeaGfdpnlvalaaeeaeeevaqrlaldpavrivdftGsnafGewleqnarqaqv..ytekaG......vntviiestddlkavlrnlafslslysGqmctttqailvprdGirtdegrksydevaadlaaaidkllgddaravallGaiqsed....tvariaearalG.evllds.kklehpefpdarvrtplllkvdaadeaayaeerfGpiafvvavddaahavelarrvvrekGaltlgvyttdeevveav 489
                   d +a l+aa++a  +w  +    r gv l+i +r+++    la a     G+a   ++ a  p   d       + y +          e   G  d  ++  +f+  p G+   i    fp   +   +  +la+Gn++++kp +++  p+++   v  e ++++   p+  + +++  ++e+ q+la + ++  + ftGs+  G  + + a +  +   te+ G       n+ ++   d++ + + + a    +  G++ct++  +lv  d  + +        +a+ + +a +   g++  +  ++Ga  s++    ++  ++  r+ G e+l+    +  + e+       p l+k  + d   ++ee+fGp+  v + +d ++a+ +a+++      l  gv+t d+++++++
  MMETSP1061-20121228|47672_1  56 EDIEAALDAAHAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETLAADVPLMAD------HFRYFAGCIR----AQEGSIGEIDETTVAYHFHE-PLGVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQT--PVSI--LVLMECIGDL--LPAGTLNIVNGFGAEAGQALASSTRIAKIAFTGSTPVGSHIMKCAAENIIpsTTELGGkspnvyFND-VMAQEDEFVSKAIEGAVLAYFNQGEVCTCPSRLLVQEDIAD-EF-------IAKVIERAKQIKRGNPLDTDTMVGAQASQEqydkILGYMDIGREEGaEILMGGgVEKLDGEYGSGYYIMPTLIKG-TNDMRVFQEEIFGPVVSVTTFKDEEEALAIANDTEF---GLGAGVWTRDTNLAYRM 445
                  578899***********************************************998888776665555......4444433322....23445688888888888885.6666666666778888888888889***********9986..6655..4556777764..57777777888899**************************999998877643689888332221233.34455667666666676666778************888432.22.......233333333333455556666666665555000055556667777855555431345578999999999**9995.56889***********************99998643...35558888888877776 PP

>> TIGR00407  proA: glutamate-5-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.7   0.0     1e-06   0.00028       8     270 ..      72     326 ..      64     368 .. 0.74
   2 ?    1.4   0.0     0.089        24     300     370 ..     398     468 ..     382     484 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.7 bits;  conditional E-value: 1e-06
    TIGR00407   8 laqlstaeknealskiadeLkaeaelilaanakdiaaakenGladalldrLlLteeklksiaddvkdvieLadPvGkvieareldeGLklervrvPlGvlgviyearPevivdv..asLclktGnaviLkGgkeavrsnkalveviqdaleqtglpveavqliedpdreevkellkldeyvdlliPrGgnel...vklikeestiPvlehadGvC.hiyld.....esadlakakkvivdaktqrPstCnaietLLvnkaiaeefleeLekqle 270
                    ++s  e++ +l kiad +++++e +  a   d  +a  + la +    + L  ++++  a  ++     +  +G      e+de  + ++ + PlGv+g i       ++ +   + +l +Gn ++Lk ++++  s  +l+e i d l     p++++++++    +e+ + l     +  +   G++ +   + ++  e  iP  ++  G   ++y +     e+  ++ka++  v a  ++  +C +   LLv+++ia+ef+ ++ ++ +
  MMETSP1061-20121228|47672_1  72 WGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETLAAD----VPLMADHFRYFAGCIRAQ---EGSIG------EIDETTVAYHFHEPLGVVGQIIPWNFPLLMAAwkIAPALAAGNTIVLKPAEQTPVSILVLMECIGDLL-----PAGTLNIVNG-FGAEAGQALASSTRIAKIAFTGSTPVgshIMKCAAENIIPSTTELGGKSpNVYFNdvmaqEDEFVSKAIEGAVLAYFNQGEVCTCPSRLLVQEDIADEFIAKVIERAK 326
                  5677888999999999999999999999999888877766666655....578899999999888864...44555......5577778899*********99876554444441135689*************************9975.....7777777776.55677777888888888888888755222567888999999887777543677651111134446799999999*************************999876554 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.089
    TIGR00407 300 dfdkeflsldLsvkivedleeaiehirqygtkhsdailtedkknaekfvkevdsaavyvnastrfadGfrf 370
                   f++e   +++sv + +d eea++  ++       ++ t+d++ a ++ + + +  v++n+   +     f
  MMETSP1061-20121228|47672_1 398 VFQEEIFGPVVSVTTFKDEEEALAIANDTEFGLGAGVWTRDTNLAYRMGRGIQAGRVWMNCYHLYPAHAAF 468
                  4889999999************9999999999999*************************97766555555 PP

>> TIGR02518  EutH_ACDH: acetaldehyde dehydrogenase (acetylating)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.1   4.5e-08   1.2e-05      15     265 ..      63     319 ..      53     328 .. 0.76

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 4.5e-08
    TIGR02518  15 rsakvaqkklaalsqeqidkivkaivdaaeenavklakmaneetGfGkvedkvlknk.laakivy..dsikdmk.tvGileedkekkvievavpvGvvaglvpstnptstaiyktlisikarnaivlsphpaakkciietvklirkaaekaGapegiiasltvptiegtnelmknkdtslilatG....GeamvkaayssGkpaiGvGpGngpa..yieksanvkkavkkildskt...fdnGticaseqsvvvekvnkdavve 265
                    a+ a+    ++s  +   ++  i+d  een ++la   + + G    e        +a ++ y   +i+    ++G ++e+    + +  +p+Gvv  ++p   p   a +k   ++ a+n+ivl p  ++  +i+  ++ i +       p g + +++    e+ + l  +  ++ i  tG    G+ ++k a     p+     G +p   + +  a+ ++ v k ++      f++G +c+    ++v++   d+ ++
  MMETSP1061-20121228|47672_1  63 DAAHAAKGAWGTMSVGERSGVLLKIADRIEENLERLAVAETWDNGKAVRETLAADVPlMADHFRYfaGCIRAQEgSIGEIDET--TVAYHFHEPLGVVGQIIPWNFPLLMAAWKIAPALAAGNTIVLKPAEQTPVSILVLMECIGDL-----LPAGTLNIVNGFGAEAGQALASSTRIAKIAFTGstpvGSHIMKCAAENIIPSTTELGGKSPNvyFNDVMAQEDEFVSKAIEGAVlayFNQGEVCTCPSRLLVQEDIADEFIA 319
                  55667777788888888899999999999999999998777777777666666555414555555446888654379999999..5567889*************************************888887777766666654.....6888899999999999999999999999998886666678888888888888888788888543556778888888888886532338889999888888777766666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (506 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.50u 0.15s 00:00:00.65 Elapsed: 00:00:00.80
# Mc/sec: 834.83
//
Query:       MMETSP1061-20121228|47732_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.11s 00:00:00.21 Elapsed: 00:00:00.33
# Mc/sec: 355.97
//
Query:       MMETSP1061-20121228|47736_1  [L=148]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (148 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.41
# Mc/sec: 476.45
//
Query:       MMETSP1061-20121228|47740_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 573.87
//
Query:       MMETSP1061-20121228|47745_1  [L=438]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-07   28.8  11.5    1.7e-05   22.4   0.1    2.9  3  TIGR00803 nst: UDP-galactose transporter


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.6   0.2     0.047   1.9e+02      32      52 ..      90     110 ..      62     151 .. 0.64
   2 !   12.2   1.1   5.7e-06     0.023       4      66 ..     168     231 ..     166     241 .. 0.91
   3 !   22.4   0.1   4.2e-09   1.7e-05      83     221 ..     291     432 ..     271     433 .. 0.80

  Alignments for each domain:
  == domain 1    score: -0.6 bits;  conditional E-value: 0.047
    TIGR00803  32 qlkilstalmtlgslvaslgd 52 
                   l  ls +lm+++++  +   
  MMETSP1061-20121228|47745_1  90 TLNNLSLVLMMMLAIQYAVQP 110
                  566678888888888665543 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 5.7e-06
    TIGR00803   4 VPiliilkqnnlvlvalgnllaagkq.vTqlkilstalmtlgslvaslgdkqwfslkllklgva 66 
                  VP+ ++++q  l++v + +l+ +++   Tq k ls+al+  +++ +  +  q ++l++l+  + 
  MMETSP1061-20121228|47745_1 168 VPAVLYALQGVLQYVSYQQLDSVTFNgLTQTKTLSAALCCWLIMGKPQSLLQMVALGILFASTL 231
                  9********************99987478***************************99987665 PP

  == domain 3    score: 22.4 bits;  conditional E-value: 4.2e-09
    TIGR00803  83 lvvglsavlsallssglagvyfekilkdkdts...fyvrnlqlplfgllvtfvvlllsdgslisnkg.ffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatll 221
                   + g+   l+a + sglag   +k+l+ + +     +   ++ ++f+ +  + + +  +gsl+ ++   +   + ++ i ++++++ g++++lv kya ++ k+++l    +ls ++ +r+ +  l+++ ++g+i+ +++t l
  MMETSP1061-20121228|47745_1 291 WWRGVTPCLGAAFLSGLAGALSQKGLQATGIRgrdPFLYTMEVSFFSAVT-LLISMARSGSLDLDWRqQKSHWNWKTLIPIFMKAFSGVLTALVHKYAGSVSKGFALMFGLVLSNMIQLRAKQESLQSYQVVGTIMIMVSTWL 432
                  56677777888888999988888888777654223344456777777776.6666666777777765137788999*************************************************************999976 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (438 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       131  (0.0319356); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.24u 0.13s 00:00:00.37 Elapsed: 00:00:00.33
# Mc/sec: 1751.86
//
Query:       MMETSP1061-20121228|47742_1  [L=954]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-26   88.2   8.7      6e-06   24.0   0.0   11.3 12  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.012        48       6      25 ..     224     243 ..     222     250 .. 0.86
   2 ?   -3.7   0.0       0.9   3.7e+03      18      28 ..     317     327 ..     312     328 .. 0.77
   3 !    3.3   0.0    0.0055        22       2      29 ..     343     370 ..     342     373 .. 0.89
   4 !   14.2   0.0   1.8e-06    0.0075       2      26 ..     455     479 ..     454     482 .. 0.91
   5 ?   -0.9   0.0      0.12   4.9e+02       1      13 [.     496     508 ..     496     509 .. 0.89
   6 ?   -0.9   0.0      0.12   4.9e+02      11      23 ..     566     578 ..     559     581 .. 0.83
   7 !   15.7   0.0   6.3e-07    0.0026       2      28 ..     661     687 ..     660     696 .. 0.83
   8 !   24.0   0.0   1.5e-09     6e-06       1      30 [.     697     726 ..     697     729 .. 0.91
   9 ?   -3.4   0.0      0.77   3.2e+03       2      13 ..     743     754 ..     742     755 .. 0.87
  10 ?   -0.3   0.1     0.075   3.1e+02      17      28 ..     761     772 ..     760     774 .. 0.90
  11 !    3.1   0.0    0.0063        26       1      11 [.     787     797 ..     787     803 .. 0.87
  12 !   15.8   0.1   6.1e-07    0.0025       1      35 []     867     899 ..     867     899 .. 0.93

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.012
    TIGR00756   6 lisglckagrveeAlelfde 25 
                  l+ g+ +ag +++A++l+ e
  MMETSP1061-20121228|47742_1 224 LVTGYLNAGVPRKACQLLME 243
                  789*************9876 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.9
    TIGR00756  18 eAlelfdeMke 28 
                   A++l++ M++
  MMETSP1061-20121228|47742_1 317 LAHQLLKHMCR 327
                  58899999976 PP

  == domain 3    score: 3.3 bits;  conditional E-value: 0.0055
    TIGR00756   2 tyntlisglckagrveeAlelfdeMker 29 
                  ++  ++ +++   ++  A+e++++M++ 
  MMETSP1061-20121228|47742_1 343 CFHQVLAACSSIESMATAKEILEDMRRF 370
                  57789999*****************986 PP

  == domain 4    score: 14.2 bits;  conditional E-value: 1.8e-06
    TIGR00756   2 tyntlisglckagrveeAlelfdeM 26 
                  +yn+l++ l+++gr+e A+ lf ++
  MMETSP1061-20121228|47742_1 455 CYNVLLNVLAEQGRYELAENLFLRL 479
                  8********************9765 PP

  == domain 5    score: -0.9 bits;  conditional E-value: 0.12
    TIGR00756   1 vtyntlisglcka 13 
                  vt nt+++++++a
  MMETSP1061-20121228|47742_1 496 VTLNTVLKSHVQA 508
                  799*******997 PP

  == domain 6    score: -0.9 bits;  conditional E-value: 0.12
    TIGR00756  11 ckagrveeAlelf 23 
                   k g++++A+e++
  MMETSP1061-20121228|47742_1 566 IKLGQPKKAIEVL 578
                  699********97 PP

  == domain 7    score: 15.7 bits;  conditional E-value: 6.3e-07
    TIGR00756   2 tyntlisglckagrveeAlelfdeMke 28 
                  t+nt++++  kag++++A+++++e + 
  MMETSP1061-20121228|47742_1 661 TCNTILNCWTKAGHPDHAERFLEETML 687
                  9*********************66443 PP

  == domain 8    score: 24.0 bits;  conditional E-value: 1.5e-09
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkerg 30 
                  v+ynt+i+g+++ g++e Alel+ +++e+ 
  MMETSP1061-20121228|47742_1 697 VSYNTIIHGYARLGNLERALELLTRLLEDS 726
                  79*********************9998876 PP

  == domain 9    score: -3.4 bits;  conditional E-value: 0.77
    TIGR00756   2 tyntlisglcka 13 
                  t+++++ +l+k+
  MMETSP1061-20121228|47742_1 743 TFTSILIALSKE 754
                  9*****999986 PP

  == domain 10    score: -0.3 bits;  conditional E-value: 0.075
    TIGR00756  17 eeAlelfdeMke 28 
                  eeA++l+ +M+e
  MMETSP1061-20121228|47742_1 761 EEAERLLLQMQE 772
                  89********98 PP

  == domain 11    score: 3.1 bits;  conditional E-value: 0.0063
    TIGR00756   1 vtyntlisglc 11 
                  vtyn+++++ +
  MMETSP1061-20121228|47742_1 787 VTYNAVMNCWA 797
                  7********76 PP

  == domain 12    score: 15.8 bits;  conditional E-value: 6.1e-07
    TIGR00756   1 vtyntlisglckagrveeAlelfdeMkergivPda 35 
                  ++yn+++++++  +++ +A+el ++M+++g++P++
  MMETSP1061-20121228|47742_1 867 ISYNIVMRAYS--NDMVKAEELVRDMIANGLEPTE 899
                  58********7..79******************85 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (954 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.40u 0.15s 00:00:00.55 Elapsed: 00:00:00.48
# Mc/sec: 2623.28
//
Query:       MMETSP1061-20121228|47743_1  [L=356]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (356 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1740.30
//
Query:       MMETSP1061-20121228|47747_1  [L=236]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      3e-05   21.5   0.0    7.3e-05   20.3   0.0    1.6  1  TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
    5.8e-05   21.1   0.1     0.0012   16.8   0.0    2.2  2  TIGR01068 thioredoxin: thioredoxin
     0.0088   13.6   0.0      0.012   13.1   0.0    1.3  1  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
  ------ inclusion threshold ------
      0.012   13.7   0.1       0.62    8.2   0.0    2.2  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
      0.022   12.8   0.1        2.9    6.0   0.0    2.3  2  TIGR02180 GRX_euk: glutaredoxin
      0.037   11.1   0.0       0.13    9.3   0.0    1.8  1  TIGR02740 TraF-like: TraF-like protein


Domain annotation for each model (and alignments):
>> TIGR00385  dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.3   0.0   1.1e-07   7.3e-05      53     146 ..      33     137 ..      17     144 .. 0.63

  Alignments for each domain:
  == domain 1    score: 20.3 bits;  conditional E-value: 1.1e-07
    TIGR00385  53 qlltaevlkkgklvLlnvw..asWCptCraehplLkel......akeglrivgvdykDesqkalkfLkel...GnPyqlvlaDekGklaldlGvygaPetflvdg 146
                  ++ ta+ lkk+k+ L+ ++  asWCp+C+   plL+e+      +++gl+i+ v      ++  ++ k++     P     a  k +l+  lGv+++P   ++d+
  MMETSP1061-20121228|47747_1  33 PVSTADFLKKSKPSLIGLYfsASWCPPCQRFTPLLTEFylgakaSNSGLEIIFVSSDRGLDEFNEYYKKMpwlAIPAVEGSAQIKQSLSNTLGVTAIPSIAIIDA 137
                  677899*********9876669************99854443335677888877654333333333333300033444444444555566677777777777765 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   1.8e-06    0.0012      15      39 ..      44      70 ..      34      98 .. 0.74
   2 ?    2.1   0.0     0.069        47      57      77 ..     117     137 ..     109     156 .. 0.76

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 1.8e-06
    TIGR01068 15 klvlv..DfwAeWCgpCkmlaPvleel 39
                 k+ l+   f A+WC pC+ ++P+l e+
  MMETSP1061-20121228|47747_1 44 KPSLIglYFSASWCPPCQRFTPLLTEF 70
                 3444411577**************987 PP

  == domain 2    score: 2.1 bits;  conditional E-value: 0.069
    TIGR01068  57 eqeiaakygirsiPtlllfkn 77 
                  +q+++++ g+++iP + ++  
  MMETSP1061-20121228|47747_1 117 KQSLSNTLGVTAIPSIAIIDA 137
                  5788999********988753 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   1.7e-05     0.012      56      98 ..      51      97 ..      40     141 .. 0.83

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.7e-05
    TIGR02738 56 lfyqstCpyChqfapvLkql.....sqqtglevlayslDgkglaeFpd 98
                 +f  s Cp C++f p L+++     +++ gle++ +s D +gl+eF++
  MMETSP1061-20121228|47747_1 51 YFSASWCPPCQRFTPLLTEFylgakASNSGLEIIFVSSD-RGLDEFNE 97
                 678899************995555556677777777766.56777765 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0009      0.62      19      46 ..      50      77 ..      35     101 .. 0.67
   2 ?    3.5   0.0     0.027        19      51      83 ..     106     140 ..      92     156 .. 0.71

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0009
    TIGR01126 19 vefyaPWCGhCkklaPeyeklakelkke 46
                 + f a WC  C++++P   +     k++
  MMETSP1061-20121228|47747_1 50 LYFSASWCPPCQRFTPLLTEFYLGAKAS 77
                 4688************877765544444 PP

  == domain 2    score: 3.5 bits;  conditional E-value: 0.027
    TIGR01126  51 kiakvd..ataekelaskfkvsgfPtlkffkkgkk 83 
                   i  v+  a+ +++l+++++v++ P + ++++++ 
  MMETSP1061-20121228|47747_1 106 AIPAVEgsAQIKQSLSNTLGVTAIPSIAIIDAKTG 140
                  555554116777999**************998775 PP

>> TIGR02180  GRX_euk: glutaredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.0   0.0    0.0042       2.9       4      25 ..      52      73 ..      50     101 .. 0.84
   2 ?    5.0   0.0     0.009       6.2      27      66 ..     101     140 ..      85     164 .. 0.76

  Alignments for each domain:
  == domain 1    score: 6.0 bits;  conditional E-value: 0.0042
    TIGR02180  4 fsKsyCpYckkakelLkklkvk 25
                 fs s+Cp c++   lL++ ++ 
  MMETSP1061-20121228|47747_1 52 FSASWCPPCQRFTPLLTEFYLG 73
                 999*************998865 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.009
    TIGR02180  27 alevveldklengselqdyLkeltgqrtVPrifingkfiG 66 
                  ++ ++ +  +e  +++++ L+++ g +++P+i i +   G
  MMETSP1061-20121228|47747_1 101 KMPWLAIPAVEGSAQIKQSLSNTLGVTAIPSIAIIDAKTG 140
                  4778888999999*******************99766655 PP

>> TIGR02740  TraF-like: TraF-like protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   0.0    0.0002      0.13     175     213 ..      51      93 ..      42     148 .. 0.62

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.0002
    TIGR02740 175 fffksdCklCeqqapilkal.....eerygievlpvSvDGkplp 213
                  +f +s C+ C+ + p l  +     + + g+e+++vS D + l+
  MMETSP1061-20121228|47747_1  51 YFSASWCPPCQRFTPLLTEFylgakASNSGLEIIFVSSDRG-LD 93 
                  566677**********9988555446799********9943.22 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (236 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.28
# Mc/sec: 1074.12
//
Query:       MMETSP1061-20121228|47744_1  [L=613]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (613 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                      102  (0.0248659); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.30u 0.14s 00:00:00.44 Elapsed: 00:00:00.26
# Mc/sec: 3111.90
//
Query:       MMETSP1061-20121228|47750_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 485.96
//
Query:       MMETSP1061-20121228|47751_1  [L=209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.034   12.1   0.0      0.065   11.2   0.0    1.5  1  TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family


Domain annotation for each model (and alignments):
>> TIGR02606  antidote_CC2985: putative addiction module antidote protein, CC2985 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   1.6e-05     0.065       3      37 ..     126     160 ..     124     174 .. 0.90

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.6e-05
    TIGR02606   3 svsLgeqlesFiesqvqsGrYgsaSEVvRaaLRll 37 
                  sv+L +q   +++s v++   +++SEV+R+ +++ 
  MMETSP1061-20121228|47751_1 126 SVELAPQQIDWVNSIVSKSEGSDQSEVIRSVIKAC 160
                  89****************************99875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                      109  (0.0265724); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.28
# Mc/sec: 951.23
//
Query:       MMETSP1061-20121228|47749_1  [L=396]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (396 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       197  (0.0480254); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.16s 00:00:00.40 Elapsed: 00:00:00.37
# Mc/sec: 1412.64
//
Query:       MMETSP1061-20121228|47748_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.14    9.2   3.8       0.21    8.6   2.7    1.3  1  TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase


Domain annotation for each model (and alignments):
>> TIGR03025  EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.6   2.7   5.2e-05      0.21       8     125 ..      50     137 ..      27     181 .. 0.43

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 5.2e-05
    TIGR03025   8 vlallla.llllslkllleeeesslllllllllllilfalaglyrskrrrslleelarvllalllllllllalafllkslslsrlvlllalllalllllllrlllrrllrrlrkkglna 125
                  ++++++a ++++  +l +  ++s +l+l+++++ li +al                              ++ +f+lk  +++ ++ + ++l  l++l   ++ll++ ++++ +   +a
  MMETSP1061-20121228|47748_1  50 FVVVYFAlSMFEMVSLHQSGDASIALVLAVIWTGLIHLALG-----------------------------VLGTFVLK--RFPTSFSVGFFLGVLVVLANQNILLYASFHKYTQGSSRA 137
                  22222221122222222222222222222222223333332.............................23333333..333333333333344444444444444333333222222 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       223  (0.0543637); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 919.21
//
Query:       MMETSP1061-20121228|47752_1  [L=836]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.8e-21   71.7   0.0    4.1e-20   68.9   0.0    2.0  1  TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
    1.9e-10   37.5   0.1    9.9e-10   35.1   0.0    1.9  1  TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
      1e-06   25.7   0.0     0.0059   13.2   0.0    2.6  2  TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family
      1e-06   25.3   0.0    0.00032   17.1   0.0    2.5  2  TIGR01389 recQ: ATP-dependent DNA helicase RecQ
    2.3e-06   24.1   0.1      0.017   11.3   0.0    2.1  2  TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB
    2.7e-06   24.5   0.1    0.00015   18.8   0.0    2.9  1  TIGR01587 cas3_core: CRISPR-associated helicase Cas3
    0.00089   15.9   0.0     0.0019   14.8   0.0    1.5  1  TIGR00643 recG: ATP-dependent DNA helicase RecG
     0.0091   12.0   0.0      0.028   10.4   0.0    1.7  2  TIGR01407 dinG_rel: putative DnaQ family exonuclease/DinG family helicase
  ------ inclusion threshold ------
      0.054    9.9   0.0       0.12    8.7   0.0    1.6  1  TIGR00595 priA: primosomal protein N'


Domain annotation for each model (and alignments):
>> TIGR04121  DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   68.9   0.0   8.9e-23   4.1e-20       8     331 ..     213     579 ..     206     583 .. 0.75

  Alignments for each domain:
  == domain 1    score: 68.9 bits;  conditional E-value: 8.9e-23
    TIGR04121   8 aargwe.prafQkevleaaeegesglliapTGaGKTlavflpsliela...akekpkkglkvlyitPLkaLakdieraleapieelgleirvelrtGDtssserarqrkkppdiLltTpEslaLllsskdaeklfkdlravvvDElHeLlgskRG.......dlleLaLarLrrlapelrvvglsATvgn.lee.aaevllgeek.......eekaklvkakekkaleve.........sllpeeeeklPwaGhlglkaleevleeikka.......rttlvFtNtRsqaEllfqaLleaneelaleialhHgsldkeqRekveaalkagklr..............avvcTssLdLGvDfgdvdlviqvGspk 331
                  a+rg + + + Q++ ++++ eg++++l  pTG+GKTla +lp l++++     +k+ ++ ++l i P + Lak++ +  ++ +   g  + v++  G  + +++    kk+p+i++tTp  l  l+ + +    +++++++v+DE   Ll  +         + +e aL  +    pe +++ +sAT+g+ +++ a+++  ++++       + +++lv+++++ + +           sl  +++ +    Gh  ++  +++   i+++       r t+vF+ t+s +E +   L e+ +   ++i + Hg +++++R++  a+++++ +r              ++v+T     G+D  +vdlv+q G p+
  MMETSP1061-20121228|47752_1 213 ASRGVNsLLPIQQASFDKIYEGKDAVLYSPTGSGKTLAFVLPLLSSAKrrpWLRKKVASPRILTICPSRELAKQVGKEYSKLV---GKAFGVATVFGGVPLERHVSLLKKKPQIVVTTPGRLRELVREGHM--DYSQVTTLVLDEADLLLDRQDSpdvfsaiEDIENALEDIDDEDPEYQMILVSATIGEnVKDfARQMEFPKSSfikidgnRDSKTLVNSSSSVRNASGapisknagpSLSIASSPNAATVGHWHMSCKSAIRPDITANlisvlspRLTIVFVPTKSETESVAAFLSEKAAG--TTIRILHGDMSQSARSRCIAMVRDDAIRkdqqqqrfrsesgqILVATDVASRGLDLPNVDLVVQFGLPR 579
                  55655415789************************************9654344555899***************99988876...67899*********************************9987665..589***********99998865222222234677899999999************8624442555555555466565554556666655443332220000011113444445555666777766666666655544222233389**************9999998887..99***************999888877764444444444444479**********************987 PP

>> TIGR03817  DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.1   0.0   2.2e-12   9.9e-10      21     289 ..     204     502 ..     190     605 .. 0.62

  Alignments for each domain:
  == domain 1    score: 35.1 bits;  conditional E-value: 2.2e-12
    TIGR03817  21 vepdvvaaleaaGieapwqhqaraaelahaGehvvvatgtasGkslayllPvlsalaedp.......ratalylaPtkalaadqlravkeleerdvraatydGdtpaeer.ewirekaryvltnPdmlhlgilpsharWakflralryvvvdechsyrGvfGs.hvalvlrrlrrlcary.GaeP..vfllasatsadpaaaasrliGleveavtedgsPrgartvvlwePalle................legengapvrr.sasaeaa...dlladlva..egvrtltfvrsrrgaevval 289
                  ++  v+++++++G+++    q +  +   +G+++v+   t sGk+la+ lP+ls+ ++ p         ++l ++P + la+   +  ++l  + + +at  G  p e+  + +++k ++v+t P  l   +   h  ++++      +v+de+        s +v + +  +    + +   +P   ++l sat  +  + ++r +  + +   +    r ++t+v    ++ +                ++  n+a v +  +s ++a   d+ a+l++  +   t++fv +++++e va+
  MMETSP1061-20121228|47752_1 204 IPTVVQEKMASRGVNSLLPIQQASFDKIYEGKDAVLYSPTGSGKTLAFVLPLLSSAKRRPwlrkkvaSPRILTICPSRELAKQVGKEYSKLVGKAFGVATVFGGVPLERHvSLLKKKPQIVVTTPGRLRELVREGHMDYSQVT----TLVLDEADLLLDRQDSpDVFSAIEDIENALEDIdDEDPeyQMILVSATIGENVKDFARQMEFPKSSFIKIDGNRDSKTLVNSSSSVRNasgapisknagpslsiASSPNAATVGHwHMSCKSAirpDITANLISvlSPRLTIVFVPTKSETESVAA 502
                  56779999*************************************************99777777667899*************************99999888888765268899********************9998764....467777765443333224444455444444443122331145666666666666666666665433333333344555555554444456666666666666664444444443311222222222555555431123346666666666666655 PP

>> TIGR00614  recQ_fam: ATP-dependent DNA helicase, RecQ family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.2   0.0   0.00021     0.097       8      50 ..     216     258 ..     209     261 .. 0.88
   2 !   13.2   0.0   1.3e-05    0.0059     228     319 ..     486     601 ..     463     606 .. 0.70

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 0.00021
    TIGR00614   8 glesfrpvqlevinavlegrdalvvmatGgGksLCyqlpavvs 50 
                  g +s  p q+   + + eg+da++  +tG Gk L + lp + s
  MMETSP1061-20121228|47752_1 216 GVNSLLPIQQASFDKIYEGKDAVLYSPTGSGKTLAFVLPLLSS 258
                  5667789999999************************998765 PP

  == domain 2    score: 13.2 bits;  conditional E-value: 1.3e-05
    TIGR00614 228 sGiiYClsrkkveqvaaeLqkk..glaaaaYhagleesarkev..............qkkflrdeiqvvvatvafGmGinkpdvRfvihyslpk........siesYYqesGRaGR 319
                    i++ +++ ++e+vaa L +k  g + +  h ++++sar++               q++f  +  q++vat     G++ p+v  v+ ++lp+        + e Y   +GR GR
  MMETSP1061-20121228|47752_1 486 LTIVFVPTKSETESVAAFLSEKaaGTTIRILHGDMSQSARSRCiamvrddairkdqqQQRFRSESGQILVATDVASRGLDLPNVDLVVQFGLPRiagkdgtvNPELYAHRTGRTGR 601
                  459999999999999999977533667788999999887643212222222233333789999999******999******************84444433334667777777776 PP

>> TIGR01389  recQ: ATP-dependent DNA helicase RecQ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    5.2   0.0    0.0027       1.2      12      50 ..     218     256 ..     209     260 .. 0.88
   2 !   17.1   0.0     7e-07   0.00032     225     317 ..     485     601 ..     466     605 .. 0.73

  Alignments for each domain:
  == domain 1    score: 5.2 bits;  conditional E-value: 0.0027
    TIGR01389  12 eeFRggqeeiieevldgrdvlavlPtGGGkslCYqvPaL 50 
                  ++  + q++  +++ +g+d++   PtG Gk l + +P L
  MMETSP1061-20121228|47752_1 218 NSLLPIQQASFDKIYEGKDAVLYSPTGSGKTLAFVLPLL 256
                  66678899999***********************99976 PP

  == domain 2    score: 17.1 bits;  conditional E-value: 7e-07
    TIGR01389 225 ksGiiYassRkkveelaeaLesk..giealaYhaGlskkvRa..............eaqekFleddvkvvvatvaFGmGidksdvRfvihldlPk........nlesyyqeaGRaGR 317
                  +  i++  +++++e++a++L++k  g +  + h+ +s++ R+              ++q++F  +  +++vat     G+d ++v  v+ + lP+        n e y   +GR GR
  MMETSP1061-20121228|47752_1 485 RLTIVFVPTKSETESVAAFLSEKaaGTTIRILHGDMSQSARSrciamvrddairkdQQQQRFRSESGQILVATDVASRGLDLPNVDLVVQFGLPRiagkdgtvNPELYAHRTGRTGR 601
                  5679999999999999999987622566678999999887652222222222222246899********************************974333333345677777777776 PP

>> TIGR01970  DEAH_box_HrpB: ATP-dependent helicase HrpB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.7   0.0   5.5e-05     0.025       6     123 ..     220     353 ..     216     405 .. 0.70
   2 !   11.3   0.0   3.7e-05     0.017     213     295 ..     487     581 ..     459     602 .. 0.79

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.5e-05
    TIGR01970   6 vlPklrdala...akpqvvLeappGaGkstalPLalLda....pwl....igrkiilLePrrlaaravaerlaselgeevGetvGy.rvrlenkvs...aktrlevvteGiltrmlqdDP.eLegvdllifDef 123
                  +lP  +++++     ++ vL +p+G+Gk+ a+ L lL      pwl    ++ +i+ + P r  a++v +  ++ +g++ G    +  v le +vs   +k ++ v t G l  ++++     ++v  l++De 
  MMETSP1061-20121228|47752_1 220 LLPIQQASFDkiyEGKDAVLYSPTGSGKTLAFVLPLLSSakrrPWLrkkvASPRILTICPSRELAKQVGKEYSKLVGKAFGVATVFgGVPLERHVSllkKKPQIVVTTPGRLRELVREGHmDYSQVTTLVLDEA 353
                  5555555544111456789*****************97422337862222556999999*99999999999999999999965444268888888754467889999999997777664414678999999984 PP

  == domain 2    score: 11.3 bits;  conditional E-value: 3.7e-05
    TIGR01970 213 vLvfLPGqaeirrveeaLaerldasevelcPLyGeleleaqdr........aikpaaaGrr......kvvLatniaetsltieGvrvviDsglarva 295
                   +vf+P ++e + v++ L+e+ +++ +++  L+G+++  a++r        ai+ + + +r      ++ +at++a   l ++ v +v+  gl r a
  MMETSP1061-20121228|47752_1 487 TIVFVPTKSETESVAAFLSEKAAGTTIRI--LHGDMSQSARSRciamvrddAIRKDQQQQRfrsesgQILVATDVASRGLDLPNVDLVVQFGLPRIA 581
                  479*****************999777666..9******99988222222224445555555445555799**********************99987 PP

>> TIGR01587  cas3_core: CRISPR-associated helicase Cas3
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.0   3.3e-07   0.00015       3     294 ..     238     566 ..     236     574 .. 0.74

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 3.3e-07
    TIGR01587   3 vieAPtGyGKteaallwalk.......likkqkadkvifalPtratanamyerlkelfgselvlllksassrkikekgdseeleklvklysksnkkvflkpitvctidqvlksvlke.vgeaeitlasianSvliiDEvhayeeytkal.llallevlk..dvdvkillmsAtlpkllkeylekielveenealdlke....................................ekrfenqrisliekdkleeisslerllealkkekkvliivNtVdrAqelyqklkekapeeeiiLlHsrftekdrekkEaellke.lkk.........nekfvivaTQviEvslDi 294
                  v++ PtG+GKt a +l +l        l kk  + +++ + P r +a  + +  ++l g+  ++                  le+ v+l+ k+       +i v+t+ ++   v ++ +++ ++t++ + ++ l +D  +  + +     ++ +le +   d + +++l sAt+ +++k +++++e + + ++ + +                                     +     +  + +++++ ++i+    +l ++ + +  +++v t  +   +   l eka+ + i +lH+ ++++ r +  a++  + ++k         + + ++vaT v+  +lD+
  MMETSP1061-20121228|47752_1 238 VLYSPTGSGKTLAFVLPLLSsakrrpwLRKKVASPRILTICPSRELAKQVGKEYSKLVGK-AFGVAT---------VFGGVPLERHVSLLKKK------PQIVVTTPGRLRELVREGhMDYSQVTTLVLDEADLLLDRQDSPDVFSAIEdIENALEDIDdeDPEYQMILVSATIGENVKDFARQMEFP-KSSFIKIDGnrdsktlvnssssvrnasgapisknagpslsiasspNAATVGHWHMSCKSAIRPDITA---NLISVLSPRLTIVFVPTKSETESVAAFLSEKAAGTTIRILHGDMSQSARSRCIAMVRDDaIRKdqqqqrfrsESGQILVATDVASRGLDL 566
                  889999999998754433332334676667788888999999999999999998888885.555554.........34455677777777766......589999999988777664588888999999999999999999888888778******9995566789*********************9.5555554447889999999999999999999999999999888653333344455666777777653...456777888889999999999999999999999999999999999998876532221111111333444444888999999999999998 PP

>> TIGR00643  recG: ATP-dependent DNA helicase RecG
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.8   0.0   4.2e-06    0.0019     492     531 ..     534     573 ..     483     579 .. 0.73

  Alignments for each domain:
  == domain 1    score: 14.8 bits;  conditional E-value: 4.2e-06
    TIGR00643 492 lksdekeevleeFrekevdiLvaTtviEvGvdvPnatvmv 531
                    +  k++  ++Fr+++++iLvaT v   G+d+Pn+ ++v
  MMETSP1061-20121228|47752_1 534 DDAIRKDQQQQRFRSESGQILVATDVASRGLDLPNVDLVV 573
                  33445777779************************99877 PP

>> TIGR01407  dinG_rel: putative DnaQ family exonuclease/DinG family helicase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.4   0.0   6.1e-05     0.028     259     290 ..     229     260 ..     208     273 .. 0.88
   2 ?   -3.0   0.0      0.71   3.2e+02     755     787 ..     541     573 ..     534     575 .. 0.87

  Alignments for each domain:
  == domain 1    score: 10.4 bits;  conditional E-value: 6.1e-05
    TIGR01407 259 delteeekslIeAatGtGKtlgYLLpalylak 290
                  d++ e +++++  +tG+GKtl++ Lp+l++ak
  MMETSP1061-20121228|47752_1 229 DKIYEGKDAVLYSPTGSGKTLAFVLPLLSSAK 260
                  566778899999*****************998 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 0.71
    TIGR01407 755 kilkrFekgekaiLlGassFwEGvDlpgnelki 787
                  +  +rF     +iL+ ++    G+Dlp+ +l++
  MMETSP1061-20121228|47752_1 541 QQQQRFRSESGQILVATDVASRGLDLPNVDLVV 573
                  6679**********************9988876 PP

>> TIGR00595  priA: primosomal protein N'
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.7   0.0   0.00026      0.12     289     338 ..     528     573 ..     488     587 .. 0.78

  Alignments for each domain:
  == domain 1    score: 8.7 bits;  conditional E-value: 0.00026
    TIGR00595 289 riarldsDttrrkkalealleqfaagkidiliGtqmiaKGldfpkvtlvg 338
                   ia++  D++r++    ++ ++f+++  +il+ t + ++Gld+p+v lv+
  MMETSP1061-20121228|47752_1 528 CIAMVRDDAIRKD----QQQQRFRSESGQILVATDVASRGLDLPNVDLVV 573
                  3444444444443....57789**************************97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (836 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       194  (0.047294); expected 82.0 (0.02)
Passed bias filter:                      170  (0.0414432); expected 82.0 (0.02)
Passed Vit filter:                        30  (0.00731351); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.65u 0.17s 00:00:00.82 Elapsed: 00:00:00.57
# Mc/sec: 1902.46
//
Query:       MMETSP1061-20121228|47754_1  [L=370]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (370 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.23
# Mc/sec: 2123.30
//
Query:       MMETSP1061-20121228|47756_1  [L=135]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   13.4   6.9      0.016   13.4   4.8    1.8  2  TIGR03892 thiopep_precurs: thiazolylpeptide-type bacteriocin precursor


Domain annotation for each model (and alignments):
>> TIGR03892  thiopep_precurs: thiazolylpeptide-type bacteriocin precursor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.4   4.8   3.9e-06     0.016      23      43 ..      22      42 ..      11      43 .. 0.88
   2 ?   -1.5   0.1      0.18   7.5e+02       5      11 ..      87      93 ..      87      94 .. 0.87

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.9e-06
    TIGR03892 23 ssgatstsssSsCsTcsctsS 43
                 +s + s+s sS++sT+s+t+S
  MMETSP1061-20121228|47756_1 22 GSPTLSSSLSSTSSTTSSTTS 42
                 57899***************9 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.18
    TIGR03892  5 DietfEi 11
                 D+etf++
  MMETSP1061-20121228|47756_1 87 DVETFDL 93
                 99***96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (135 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.18
# Mc/sec: 989.92
//
Query:       MMETSP1061-20121228|47746_1  [L=863]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      2e-07   27.0  96.8    5.3e-05   18.9  28.0    3.6  4  TIGR02168 SMC_prok_B: chromosome segregation protein SMC
  ------ inclusion threshold ------
      0.014   10.8 103.3     0.0025   13.3  27.9    4.3  5  TIGR02169 SMC_prok_A: chromosome segregation protein SMC


Domain annotation for each model (and alignments):
>> TIGR02168  SMC_prok_B: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.9  28.0   2.6e-08   5.3e-05     692     982 ..      63     341 ..      54     343 .. 0.71
   2 !   10.2  24.8   1.1e-05     0.023     696     980 ..     322     610 ..     315     613 .. 0.54
   3 !   18.3  25.7   4.1e-08   8.4e-05     660     957 ..     390     684 ..     377     712 .. 0.76
   4 !    5.6  16.5   0.00028      0.58     248     550 ..     536     840 ..     530     857 .. 0.60

  Alignments for each domain:
  == domain 1    score: 18.9 bits;  conditional E-value: 2.6e-08
    TIGR02168 692 eekiaelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkrleek 982
                  + +i++le+elk++++++ee+   +e l+ + ++   +l e++k+l++ ++  ++l+++l q +  l++le +  e++e+l+ +++   eae+ ++e  ++++++ ++      +   l ++++++ + ++e  ++le +++e+  ++++l+++eeq+e+ ++ +++le++++++e++  e++++l   +k+     ++l+e+r+e +++++e++++  +++  +++     ++l++ ++++ +l+ ei  l++ l ++  ++ e  e++ ek  +e+ ++++e++rl+ +
  MMETSP1061-20121228|47746_1  63 TGRIEQLEAELKRVRHAFEEYIATTEGLEVDVNK---ELGEMQKRLKQSSSANQNLAQKLGQMQLVLKDLERSSDETKERLKAESKLRREAERALAESGRNVDRIDSSQL-RIVDSGILTEAASNTTKGFTE--RELETVTEELITAQRRLRKTEEQLEKSQALVKDLERNLQNIESD--EASKDLLGDDKAL---LRELDEIRAEIDAARNEIQSHPADRHSSDQQQFDYAKQLQESQEEVLRLNEEITCLRNILFDQ-DMSSERTESHAEKSGKERYNLQKEIDRLKGQ 341
                  568999**********999999777777766655...9********************************************9999999999999999999998765533.334455677777777777774..67899999999999999999999999999999999999998885..4444443333333...455555555555555555555555555555555555555555555555555555444444333.3333344444343444455577777777766 PP

  == domain 2    score: 10.2 bits;  conditional E-value: 1.1e-05
    TIGR02168 696 aelekelkelekeleeleeeleklrkeleelerklselkkelerlekeveqleerlaqlek.....eleel.eeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaelt.elkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiaelqerlseeyeleleeaeeleekveeeeeeaeeelkrle 980
                  ++  ke  +l+ke ++l+ +l+ +++e +++  k+++   +   +ek ++ ++e++++ +      ++ ++    ++  ee+l+++e+ lke++ee  e ++e+  l+e+l + r +    + + + + ++e++++e++l++  +e+++++ke+ +le+++ +++ee+  l++ei++++ + e+++ee +++ +e +++++  ++  ++  +  +e+  l+++ + l+++ e+l  ++ ++e++ ++++ + +++++ ++++  +  e  +   + +++e+++ ++e+++l+
  MMETSP1061-20121228|47746_1 322 EKSGKERYNLQKEIDRLKGQLRMANDENRKEMVKVESYWRNKFLEEKPEKLHSEDMSDDDIigvrfANGSVsSYGERMMEEKLKKTEKMLKESREECSEMRSEMMVLTESLYEARHKKGGDQVRTEdRFRIEVRRQESALTDAWNEVEDKKKEVITLENTLMSTQEEVRLLSEEISNMSFTFEKAQEEYNSVVEELEKVQHLYESSLSK--SNPKEISLLRTQFQILNEKNEALARHIRDIENEFSSAREKQENVETGVRARTVIAEELKNVVDR-AVFESDQRNHEVDELQ 610
                  33334444444444444433333333333332222222221111111111122222222210000011111012233345556666666677777777777777777777777666666666666667777777777777777777777777777777777777777777777777777777777777777777776666666666555..6667777777777777777777777777777777777777777777777766665544444433.5666666666666666 PP

  == domain 3    score: 18.3 bits;  conditional E-value: 4.1e-08
    TIGR02168 660 ggvitggsektessilerkkeieeleeeieeleekiaelekelkelekeleeleeelek.lrkeleelerklselkkelerlekeveqleerlaqlekeleeleeereeleeeleeaeeelkeaeeeieeleaeieqlkeelkalrealseleaeltelkeeaaekeerleslekeiaalekeleeleeqieeleeeiesleaeieeleeeleeleeeleellkekasleealaelreeleelseelrelekkvkelereleelreklaqlelrleeleveiae.lqerlseeyelelee 957
                  g v++ g++  e+++ +++k ++e +ee+ e+ +++  l++ l e++++    + ++e+  r e +++e +l+++ +e+e  +kev +le++l ++++e+  l ee+++ +   e+a+ee + + ee+e+++  +e   +  k++ +++s l+++++ l+e+ + ++++++++e+e ++++++ e++e   + ++  +e+l++ ++++  e ++ + e++el++ +   e +++  +++ + l++e+  + + v++++++  e+ e++++ +l++e++e    e l+++++ e   + ++
  MMETSP1061-20121228|47746_1 390 GSVSSYGERMMEEKLKKTEKMLKESREECSEMRSEMMVLTESLYEARHKKGGDQVRTEDrFRIEVRRQESALTDAWNEVEDKKKEVITLENTLMSTQEEVRLLSEEISNMSFTFEKAQEEYNSVVEELEKVQHLYESSLS--KSNPKEISLLRTQFQILNEKNEALARHIRDIENEFSSAREKQENVETGVRARTVIAEELKNVVDRAVFESDQRNHEVDELQQMM---ESRMSLTEKSVDMLEKEVSVVLRSVSKAQQASLEQSEHIHDTNLEVENVEGLSHEwLADQFKHEKDEKVKA 684
                  44445555556777777788888888888888888888888888888877666655544134455666777777778888888888888888888888888888888888888888888877777777777777776544..567788899999999999999999999999999999999999999999999999999999999999999899999999988888...79999999***************************************999755441455555555444444 PP

  == domain 4    score: 5.6 bits;  conditional E-value: 0.00028
    TIGR02168 248 lkeaeeeleeleaelkeleeeleelrlekseleeeleelqkelqelkaeisrleqeieilkerleqlekeleeleeqleeleskkeeleeelaeleeeleelkeelesleaeleeaeaeleelesrleelee...eleelrsevaeleeqlaslnaelerle.aeleqleerrerlkqeieelekkleeaeaelkelqeeleeleeeleeleeelerleealeeleeeleeaeqalqkaeeelaqlqarlesleslqenleglseg.vkallknksklagilgvlselieveekyeaAieaalgerlq 550
                  ++ ++++++ l+++ ++l   + ++++e+s+++e++e++++ + + +   ++l++ + ++  + +   + ++e++e ++  es+   +e+++++le+e++ +  ++ +++++  e+ + +++ + ++e++e    e+ + + +  + e+ +a+++a++++l+ +++++le+ +++  ++i +++++ ++++   +++ e  +++  e + +e ++ +  ea+ +       a q   + + +l++++  +e l+ + +  e++ e+ ++   +   + a i +   ++i+ ++ky   i+++   +  
  MMETSP1061-20121228|47746_1 536 ISLLRTQFQILNEKNEALARHIRDIENEFSSAREKQENVETGVRARTVIAEELKNVVDRAVFESD---QRNHEVDELQQMMESRMSLTEKSVDMLEKEVSVVLRSVSKAQQASLEQSEHIHDTNLEVENVEGlshEWLADQFKHEKDEKVKAAISATMTYLSsTRMKDLEDDVDKILDDILSERSERTDTSGSEAKVIEGTDTTGSEAKITEGTDTTGSEAKVTEAPTEYDAYQSALNISPRLREISHAIEKLKIMSTIGESFPESrISDDEHTTGTTASISSSSLQSIKAKSKYAEIIQKVADYNKS 840
                  44445566666666666666666666666666666666666666666666666666666666654...333344444456666666777777777777777766666666555555666666666655555400034444444444445556777788877525788888888888888888888888888888888888888888888888777776665555444444455555556666666666666666666666666543022222333333446667777888888888888777666555 PP

>> TIGR02169  SMC_prok_A: chromosome segregation protein SMC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.5   1.6   0.00056       1.1     857     922 ..      59     121 ..      46     128 .. 0.68
   2 ?   13.3  27.9   1.2e-06    0.0025     664     925 ..     106     367 ..      99     383 .. 0.65
   3 ?   12.5  10.9   2.2e-06    0.0044     364     488 ..     401     526 ..     389     537 .. 0.83
   4 ?    1.1  15.1    0.0061        12     303     493 ..     535     720 ..     526     772 .. 0.53
   5 ?   -4.1   4.4      0.22   4.6e+02     737     897 ..     695     853 ..     675     857 .. 0.67

  Alignments for each domain:
  == domain 1    score: 4.5 bits;  conditional E-value: 0.00056
    TIGR02169 857 ieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlke 922
                   e++ +++e+le+el++ + a +e+ +  ++L+ +++   +el e++k+ ++ +++ ++  ++l +
  MMETSP1061-20121228|47746_1  59 SEDDTGRIEQLEAELKRVRHAFEEYIATTEGLEVDVN---KELGEMQKRLKQSSSANQNLAQKLGQ 121
                  4677788888888888888888888888888887664...45555555555555555554444444 PP

  == domain 2    score: 13.3 bits;  conditional E-value: 1.2e-06
    TIGR02169 664 rsgelvsasekeklerlrerleeLereleslqselrriekrldelssklsdaekkieeiekeleqleee....eeklkerleeleeklseleeeleekkeelkeleaeieeleeklaklkealedleaelseek.ieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereeleaelrelekkkeeleaeiekkrkrlkelka 925
                  ++ ++ +++  +kl +++  l++Ler+ ++ +++l+   k   e++++l ++ +++ +i + + ++ ++    e++++      e++l+ + eel  ++++l + e+++e+ ++ +++l+ +l+++e +++++  +   ++ l++l+e +++i+a+ +ei+++  +++    + +++  +  ++ +e +e    +++ei  l+  l + +   e++e + ++  +e+ +L+ke+++l+ +lr +++++++  +++e+   r k l++
  MMETSP1061-20121228|47746_1 106 KQSSSANQNLAQKLGQMQLVLKDLERSSDETKERLKAESKLRREAERALAESGRNVDRIDSSQLRIVDSgiltEAASNTTKGFTERELETVTEELITAQRRLRKTEEQLEKSQALVKDLERNLQNIESDEASKDlLGDDKALLRELDEIRAEIDAARNEIQSHPADRH----SSDQQQFDYAKQLQESQEEVLRLNEEITCLRNILFDQDMSSERTESHAEKSGKERYNLQKEIDRLKGQLRMANDENRKEMVKVES-YWRNKFLEE 367
                  444455555666777777777777777777777777777777777777777777777776555444432122133333333345666777777777777777777777777777777777777777665554441345555666666666666666666666666666....555666666666666677777788889999999999999999999999999999**************99999998888888776.333344444 PP

  == domain 3    score: 12.5 bits;  conditional E-value: 2.2e-06
    TIGR02169 364 keeleelraeleevdkeaaelreelkelkekleklkeel.nelkreldrlleelkrleeelaelkaelerieekiaeleeeleelaeeikkaeqkleqlkedlekaekelrklkeeleklekelse 488
                  +e+l++ ++ l+e  +e  e+r e++ l e l ++++++  +  r++dr   e +r+e++l ++ +e+e++++++  le++l + +ee++   +++++++   eka++e+    eelek+++  ++
  MMETSP1061-20121228|47746_1 401 EEKLKKTEKMLKESREECSEMRSEMMVLTESLYEARHKKgGDQVRTEDRFRIEVRRQESALTDAWNEVEDKKKEVITLENTLMSTQEEVRLLSEEISNMSFTFEKAQEEYNSVVEELEKVQHLYES 526
                  567788888888899999999999999988887776665256778999999999999999999999999999999999999999999999999999999999999999999999999999875554 PP

  == domain 4    score: 1.1 bits;  conditional E-value: 0.0061
    TIGR02169 303 eiekleraiaekeeeledaeerlakaeaeidklkeeieelereieeekkereklkeelkelkeeleelraeleevdkeaaelreelkelkekleklkeelnelkreldrlleelkrleeelaelkaelerieekiael..eeeleelaeeikkaeqkleqlkedlekaekelrklkeelekleke.lselerel 493
                  ei+ l+ + +  +e+ e ++++++ +e e ++ +e+ e++e+ +++  +  e+lk+ ++ +  e ++  +   evd+ ++ +  +++  ++ +++l++e   + r  ++ ++ + +++e++++ + e+e++e   +e   ++ ++e++e++k+a    ++    l+  + ++++l+++++k+ +  lse ++  
  MMETSP1061-20121228|47746_1 535 EISLLRTQFQILNEKNEALARHIRDIENEFSSAREKQENVETGVRARTVIAEELKNVVDRAVFESDQRNH---EVDELQQMMESRMSLTEKSVDMLEKEVSVVLRSVSKAQQASLEQSEHIHDTNLEVENVEGLSHEWlaDQFKHEKDEKVKAAISATMTY---LS--STRMKDLEDDVDKILDDiLSERSERT 720
                  5666666666666666666777777777777777776666666666666666666666655444444333...3444444555556666666777777777777666666666666666666666666666665544311222333444444332222221...11..12233333333333222022222233 PP

  == domain 5    score: -4.1 bits;  conditional E-value: 0.22
    TIGR02169 737 kerleeleeklseleeeleekkeelkeleaeiee...leeklaklkealedleaelseekieeieeelekleeevsriearleeieaelnklelekelleeeiqelqeeieeleeqkkeiekeieelkakleeleeeleeleaavreLeeelkdLkkereelea 897
                  + r+++le++++++ +++  +++e ++ +   ++    + +     +  e  +   se k+ e   e+++ +    +i+ rl+ei ++++kl+    +++   +   e+++  +e+   + + i ++  +  + +++ +e+ ++v+++++++ +++++ +e ea
  MMETSP1061-20121228|47746_1 695 STRMKDLEDDVDKILDDILSERSERTDTSGSEAKvieGTDTTGSEAKITEGTDTTGSEAKVTEAPTEYDAYQSA-LNISPRLREISHAIEKLK----IMSTIGESFPESRISDDEHTTGTTASISSSSLQSIKAKSKYAEIIQKVADYNKSYPQVSEDKHETEA 853
                  56788888888888888888887777765443330003333333333344455555666777777777776654.468889999999999998....5555555555666666666677777777778888888888888889999999999999998888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (863 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       452  (0.11019); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.86u 0.15s 00:00:01.01 Elapsed: 00:00:00.63
# Mc/sec: 1808.04
//
Query:       MMETSP1061-20121228|47759_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       101  (0.0246221); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.19
# Mc/sec: 1333.78
//
Query:       MMETSP1061-20121228|47755_1  [L=674]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.4e-87  291.5  17.0    3.1e-87  291.1  11.8    1.1  1  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    1.1e-23   81.7  13.7    1.6e-23   81.1   9.5    1.2  1  TIGR00898 2A0119: cation transport protein
    4.4e-15   53.3   7.7    4.4e-15   53.3   5.3    2.4  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    2.2e-13   47.8  19.3    2.9e-10   37.6   4.4    2.4  2  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    3.7e-12   43.8  12.9    6.1e-12   43.1   9.0    1.3  1  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    3.6e-11   40.4  20.5    9.1e-11   39.1  14.2    1.5  1  TIGR00893 2A0114: D-galactonate transporter
    2.2e-09   35.4  12.4    2.2e-09   35.4   8.6    3.5  4  TIGR00880 2_A_01_02: multidrug resistance protein
    3.9e-08   30.5   6.2    3.9e-08   30.5   4.3    2.3  2  TIGR00881 2A0104: phosphoglycerate transporter family protein
    2.2e-05   21.9   9.0    2.2e-05   21.9   6.2    2.6  2  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
    9.7e-05   19.1   9.8    9.7e-05   19.1   6.8    2.0  2  TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
  ------ inclusion threshold ------
        0.1    8.2  12.5     0.0066   12.2   3.1    2.4  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  291.1  11.8   8.2e-90   3.1e-87      32     508 ..     158     613 ..     138     615 .. 0.87

  Alignments for each domain:
  == domain 1    score: 291.1 bits;  conditional E-value: 8.2e-90
    TIGR00879  32 danledasellltpallgsnyvfvallsl...laalagllfgYdtavisaalallkfefkftsnlsdasssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatalsvevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifgsgklvanntlgwriplglqlipalllllglfflPesprwLvekgkeee.Arkslarlrgeksedkelleelelikikreiekesvnksgaelfslkkr.i.irrlllgvvlqafqQltGiNaimyYsptifenlGvstdtallvsiivgavnvaaTfvaiflvdrfGRrtllliGaagmaiclfvlgilgvssvtgsskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiavaanwlanfiiallfpimlensigqgvvFiffgalnvlalilvyfflpetkgltle 508
                  d+n++ as ++l+++ ++  +v +a+l++   +++  ++l g  t v++   a  k+ f  +      s ++w+l vs++ +Gg +g+ ++g+l d+ gr+ ++li+  +f++g++++ +a+  l+   +i++R+++G++ G  ++lvP+Y+ E+Ap++lRg+l++l q+a+++Gil+a ++    +   +   wr+++  ++ +a+ +ll++ fl+esprwL+ ++  +  Ar ++++lrg  se++ ++e+ ++  i ++++ ++   + ++l+++      +  l+ ++vlq+ qQl+GiNai++Ys+ i+e +  +  + l+++ ++gavnv+aT  a+ + d  GRr+l l++a  m i +++++ +     +      + +a++ + l+++++++g gp++w++v+E+f+ +  + ++++++  nw  nfi++++fp++ e  +g++ +F+ f +  +++++++ f+lpet+g+t e
  MMETSP1061-20121228|47755_1 158 DKNIRRASSTMLILDEMEEAKVVTAPLIFtvvIVSASMFLVGHNTSVMN---APEKVVFPGH------SITSWALAVSAFAIGGPFGSGMGGKLADKRGRRGAMLIGIWMFLLGGLIQTVAQDMLT---IILARFIIGFASGYTTVLVPVYLGEVAPPSLRGTLGTLTQFALVIGILFADLVA---FPFATPTRWRVMFSFTATIAVGQLLLSPFLLESPRWLLNRDPNSLrARYIIKKLRGLRSEQDVEREVGNF-IIGESAQHHEEGHDADTLKEIMSHaKrRKLLISSLVLQMAQQLSGINAIFFYSTAILEGVI-D--NPLVGTTVIGAVNVVATYAALLVMDSTGRRSLILWSAGLMFISCIIVTLALLGVLN------NAFALMAVNLYVFGFEIGLGPIPWLIVAEMFDGKYVTVAMSLCSQLNWACNFIVGMVFPYINE-YLGPY-SFFPFTVVLAATFLFALFVLPETQGKTPE 613
                  5677777777777777777777777666511144555566666666655...4566666666......89************************************************88888776...******************************************************...888899**************************************99*********999998888885555.666666666666666666666555452555566799**********************997.3..47**********************************87777777777744444444......789************************************************************.9****.888888888*****************976 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.1   9.5   4.2e-26   1.6e-23     129     502 ..     222     611 ..     216     614 .. 0.74

  Alignments for each domain:
  == domain 1    score: 81.1 bits;  conditional E-value: 4.2e-26
    TIGR00898 129 kltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnytvflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGllllallAYlird...WRwLlllvslPlvlflvlvwfvpESpRwlisqgrie.eAlkiLkrvAkingk........klpaevlslslekel.sekkakkaslldllrtpklrkttlllmllwf...ttafsYygLvldleelggniYldllisglvelpaklitlllidrLgRrktmaaslllagval.lllllvpeelk.llrtalavvgkagissaF.qmaylytaELYPTvvRnlgvgvcstmar....vGsiisPflvyvlgevslflplvifgvlallaglls.llLPetkgva 502
                  +l+ s + +G   Gs + G+l+D+ GR+ ++l+ + + ++ g+++ ++ ++  +++ r++ G++++  +v + v   E+ p + R + g+l +++  +G+l+  l+A+       WR++   ++   v  l+l+ f+ ESpRwl+ +  ++ +A+ i+k+ + + +         +    +   s+++++   +    ++++     +kl+  +l+l ++     ++a+ +y+ ++ le++  n  +   + g+v++ a  ++ll++d+ gRr  +  s  l+ +++ +++l++   l  +  ++ + +  +g ++ +  +  l++aE++      +++++cs++      + +++ P++   lg +s f+  v+       + l++ ++LPet+g++
  MMETSP1061-20121228|47755_1 222 ALAVSAFAIGGPFGSGMGGKLADKRGRRGAMLIGIWMFLLGGLIQTVAQDMLTIILARFIIGFASGYTTVLVPVYLGEVAPPSLRGTLGTLTQFALVIGILFADLVAFPFATptrWRVMFSFTATIAVGQLLLSPFLLESPRWLLNRDPNSlRARYIIKKLRGLRSEqdverevgN---FIIGESAQHHEeGHDADTLKEIMSHAKRRKLLISSLVLQMAQQlsgINAIFFYSTAI-LEGVIDNPLVGTTVIGAVNVVATYAALLVMDSTGRRSLILWSAGLMFISCiIVTLALLGVLNnAFALMAVNLYVFGFEIGLgPIPWLIVAEMFDGKYVTVAMSLCSQLNWacnfIVGMVFPYINEYLGPYSFFPFTVVL----AATFLFAlFVLPETQGKT 611
                  6889*************************************************************999999999999******************************85555569***99888888889999999***********986553899999999988888766664331...222222222222333444567778888888888888887765422256788888776.566667778999999*********************98876654443333033333333322133333333333444444414679********************986411125566667776655555554444443....33333330469****987 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.3   5.3   1.2e-17   4.4e-15      48     211 ..     217     377 ..     170     452 .. 0.80
   2 ?   -1.5   3.7      0.52   1.9e+02      75     241 ..     483     649 ..     434     660 .. 0.56

  Alignments for each domain:
  == domain 1    score: 53.3 bits;  conditional E-value: 1.2e-17
    TIGR00895  48 gldkvelGfllsagLiGmvlGallfgplaDrigRkrvllvsillfsvftlasalatnvtqLlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEsikflvekkpekvrkil 211
                  ++++  l   +sa  iG  +G+ ++g laD+ gR+ ++l++i +f ++ l   +a+++  ++++Rf+ g   G ++  + + + E ap  +r+t+ +l +   +iG++ + l+a        Wr++f + + i+ +  lll  +L Es ++l ++ p++ r ++
  MMETSP1061-20121228|47755_1 217 SITSWAL--AVSAFAIGGPFGSGMGGKLADKRGRRGAMLIGIWMFLLGGLIQTVAQDMLTIILARFIIGFASGYTTVLVPVYLGEVAPPSLRGTLGTLTQFALVIGILFADLVAFPFATPTRWRVMFSFTATIA-VGQLLLSPFLLESPRWLLNRDPNSLRARY 377
                  5544433..45777788899***********************************************************************************************99999**********7665.556778999***********666554432 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 0.52
    TIGR00895  75 laDrigRkrvllvs..illfsvftl...asalatnvtqLlvlR.flag..lGlGgllpnliaLvsEyapkrfratvvglv.avGyaiGaavggllaallipafgWrslflvggiiplllllllikvLpEsikflvekkpekvrkilnaiapslqaeaqselaeekseekkkrsvvk 241
                  + D  gR+ ++l+s  ++ +s + +   ++++ +n   L+++   + g  +GlG   p+   +v+E    ++ + +++l  ++ +a   +vg ++   +   +g  s f +   + +   l+  +vLpE    + e     v++++ +  +s+++e +  + +   +e+ ++++++
  MMETSP1061-20121228|47755_1 483 VMDSTGRRSLILWSagLMFISCIIVtlaLLGVLNNAFALMAVNlYVFGfeIGLG---PIPWLIVAEMFDGKYVTVAMSLCsQLNWACNFIVGMVFP-YINEYLGPYSFFPFTV-VLAATFLFALFVLPETQGKTPED---LVAEMVRRNSQSMVYEINADTDQGAINEE-WKKAME 649
                  458888888888863333344332200122233333333333212333114444...666777888888888888888653577777777776665.6666667777777774.44444455567788875544444...45555555555555555555444444333.444444 PP

>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   4.4   7.8e-13   2.9e-10      24     202 ..     213     370 ..     168     391 .. 0.85
   2 !   15.9   3.4   3.1e-06    0.0012     206     380 ..     408     583 ..     393     601 .. 0.65

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 7.8e-13
    TIGR00883  24 FfpssdplvallatlatfavgFlaRplGaivfGalgDrlGRkktLvvtlllMgigtvligllPsyatiGiwApilLlllrliQGlslGgEyggaalllaEsApegkrglygsfqqvgasvglllaalvvlllsallseealleWgWRiPFlvsvvlvligLylRlkleEtpvfekekek 202
                  F+  + ++++  ++++ fa+g    p+G+ + G+l+D+ GR+ ++++++++  +g    gl+ ++a+      + ++l+r+i G++ G     + ++l E+Ap++ rg +g+ +q++  +g+l+a lv++ + +           WR+ F + + +++  L+l   l E+p    +++ 
  MMETSP1061-20121228|47755_1 213 FP--GHSITSWALAVSAFAIG---GPFGSGMGGKLADKRGRRGAMLIGIWMFLLG----GLIQTVAQ----DMLTIILARFIIGFASGYTTVLVPVYLGEVAPPSLRGTLGTLTQFALVIGILFADLVAFPFAT---PTR-----WRVMFSFTATIAVGQLLLSPFLLESPRWLLNRDP 370
                  55..34455555666777776...69*************************9887....56666655....34456789*************************************************998877...344.....9************999999999999877665555 PP

  == domain 2    score: 15.9 bits;  conditional E-value: 3.1e-06
    TIGR00883 206 earkkriplaevltkk.rkelllvlglviatsvlfYllttylasYlkktaklglsaesallvlllalillllviplsgllsdriGrrkvlilltvlaallavpllsallesssillvlllllllalivamytgvma.allaelfptevRytgvslaynl...asviggglapviaaaLva 380
                  e+++   +l+e++++  r++ll+  ++  + + l  +  ++   Y+++ ++     ++ l+ ++++++++++ +  + l+ d  Grr+++++   l+++  + +  all   +   +l+++ l  + +++  g++   ++ae+f  ++ ++++sl  +l    + i g + p+i   L  
  MMETSP1061-20121228|47755_1 408 EEGHDADTLKEIMSHAkRRKLLISSLVLQMAQQLSGINAIFF--YSTAILE--GVIDNPLVGTTVIGAVNVVATYAALLVMDSTGRRSLILWSAGLMFISCIIVTLALLGVLNNAFALMAVNLYVFGFEIGLGPIPwLIVAEMFDGKYVTVAMSLCSQLnwaCNFIVGMVFPYINEYLGP 583
                  333344466777666414456666666667777888888775..7777755..4455556666667777777777778999*******99998888888777666666655544444444444444445577777625789**************9987322366788888888777655 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   43.1   9.0   1.6e-14   6.1e-12      45     372 ..     217     562 ..     202     597 .. 0.80

  Alignments for each domain:
  == domain 1    score: 43.1 bits;  conditional E-value: 1.6e-14
    TIGR00891  45 ttkdvafllsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyekllivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvvvnvlgdsWriLfflsilpiilalflrkrvpeaevwkeklkakklvktrvdkvlgg...ealvkaivktkava.................mkrsvqkrwllfvyLvvllvaanylshaiqdllPtyLkadlglskdtvavivvvsniGaivGglvfGtlsevlgrrkalvialll..gqllivPvfalsaekavLglglfllqllvqGv.wGilPkhl.aelapadaravvaGltYql 372
                  + +  a  +sa  i  ++G+ + G +aD+ grr ++++ + +f +++l+ + a+   +++ +r++iG + g    l   +  e +P  lr+ l  l + +  +G+++a +v+  +       Wr++f ++   ++  l+l   + e+  w   ++ + l    + k l+g   e+ v+  v + ++                  ++  +++r ll    +vl +a  +    +   + t +   +  ++   ++++   n+ a   +     +++ +grr  ++ ++ l    ++iv +  l+      +l +  l+++++ +  G +P ++ ae+++    +v + l  ql
  MMETSP1061-20121228|47755_1 217 SITSWALAVSAFAIGGPFGSGMGGKLADKRGRRGAMLIGIWMFLLGGLIQTVAQDMLTIILARFIIGFASGYTTVLVPVYLGEVAPPSLRGTLGTLTQFALVIGILFADLVAFPFATPTR--WRVMFSFTATIAVGQLLLSPFLLESPRWLLNRDPNSLRARYIIKKLRGlrsEQDVEREVGNFIIGesaqhheeghdadtlkeIMSHAKRRKLLISS-LVLQMAQQLSGINAIFFYSTAILEGVIDNPLVGTTVIGAVNVVATYAA---LLVMDSTGRRSLILWSAGLmfISCIIVTLALLGVLNNAFALMAVNLYVFGFEIgLGPIPWLIvAEMFDGKYVTVAMSLCSQL 562
                  5566678889999999*******************************************************9999************************************999988777..*****************************9999988876666655554111555555555555558999**********99744444555455444.555556666666666677777777777777777777766666555555...568***********997541246999999999965555666666889999888558899875489*9998888877776665 PP

>> TIGR00893  2A0114: D-galactonate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.1  14.2   2.4e-13   9.1e-11      32     394 ..     222     603 ..     216     604 .. 0.79

  Alignments for each domain:
  == domain 1    score: 39.1 bits;  conditional E-value: 2.4e-13
    TIGR00893  32 glvfsafsigyvlfqlpggllldriGakkt..lavaivlWglftllqafatalvslivlRvllGlaEaplfPgiikivasWFPakeratavsifnsaqalgaiiggplvgwilvefsWqlvFiieGvlaiilgvlilkvikdkp..ekakvlkeeeksivvg..gllaeqa..............gkknseakkaqikelL...kdrrviglalgqflvnillyffltwfplylkqerglslleagllaslpaivgfvgmvlggilsdlllkkgkslvlarktaiiaglvlsllliatnlvaskiaalalvalaffgkgl..aailwavisdvlskeiagltgGlinllGnlagivgPivigaiaattG..sfagallvvaalaligals 394
                   l +saf+ig  ++  +gg l d+ G +    + + ++l g +   +a  + +  +i++R+++G a +  +  ++ ++ +  P++ r+t   ++  a  +g +++  ++   ++  +W+++F +++ +a+   +l  ++++ ++   +   ++ + ++i+++  gl++eq+              +++++    +++ke++   k r++++  l+  +++ l ++  ++f +    e++++    ++ +++ ++v +v+ ++   + d + ++   l +a  + i +++v  +ll++ n    ++ al+ v+l +fg  +  + i+w +++++++++ + ++++l + l ++ ++++ +v+ +i++  G  sf + ++v+aa+ l+++++
  MMETSP1061-20121228|47755_1 222 ALAVSAFAIGGPFGSGMGGKLADKRGRRGAmlIGIWMFLLGGLIQTVA--QDMLTIILARFIIGFASGYTTVLVPVYLGEVAPPSLRGTLGTLTQFALVIGILFADLVAFPFATPTRWRVMFSFTATIAVGQLLLSPFLLESPRwlLNRDPNSLRARYIIKKlrGLRSEQDverevgnfiigesaQHHEEGHDADTLKEIMshaKRRKLLISSLVLQMAQQLSGINAIFFYSTAILEGVIDNP--LVGTTVIGAVNVVATYAALLVMDSTGRRSLILWSAGLMFISCIIVTLALLGVLN----NAFALMAVNLYVFGFEIglGPIPWLIVAEMFDGKYVTVAMSLCSQLNWACNFIVGMVFPYINEYLGpySFFPFTVVLAATFLFALFV 603
                  5789**********************9865004455566665555555..9******************************************************999999999999************9888888777777763323344445555655543389999999999******99984444444445555555222778899988888888888888887776655556666544..445899**********************98888888888888888888888886....5555555555555544444*******************************************9876337778899999999998876 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.0   0.2       4.1   1.5e+03      36      53 ..     187     204 ..     177     206 .. 0.59
   2 !   35.4   8.6   5.8e-12   2.2e-09       3     139 ..     224     360 ..     222     361 .. 0.93
   3 ?    0.5   0.2      0.35   1.3e+02      23      50 ..     421     448 ..     416     477 .. 0.69
   4 !    9.2   9.7   0.00074      0.28      12     141 .]     474     607 ..     465     607 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.0 bits;  conditional E-value: 4.1
    TIGR00880  36 fifvlsqllfalssnitv 53 
                   ++++s+ +f +++n +v
  MMETSP1061-20121228|47755_1 187 TVVIVSASMFLVGHNTSV 204
                  344455556666666655 PP

  == domain 2    score: 35.4 bits;  conditional E-value: 5.8e-12
    TIGR00880   3 llagyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfalssnitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavlaqalgwralflilallallafilllfllp 139
                   + ++A+g  + s + g l+d+ Gr+  +l+g+ +f+l+ l+ ++++ + ++i+ar+++Gf+++   v +  ++ +++++  r+    l   ++++g++++ l+    a+ + wr++f + a +a+  ++l+ fll+
  MMETSP1061-20121228|47755_1 224 AVSAFAIGGPFGSGMGGKLADKRGRRGAMLIGIWMFLLGGLIQTVAQDMLTIILARFIIGFASGYTTVLVPVYLGEVAPPSLRGTLGTLTQFALVIGILFADLVAFPFATPTRWRVMFSFTATIAVGQLLLSPFLLE 360
                  5789999*9************************************************************************9998888888888888888888888888999**************99999999886 PP

  == domain 3    score: 0.5 bits;  conditional E-value: 0.35
    TIGR00880  23 drvGrkpvllvglfifvlsqllfalssn 50 
                  +   r+++l+ +l+++++ ql  + +  
  MMETSP1061-20121228|47755_1 421 SHAKRRKLLISSLVLQMAQQLSGINAIF 448
                  5677999999999999999887554443 PP

  == domain 4    score: 9.2 bits;  conditional E-value: 0.00074
    TIGR00880  12 lvvsplsglltdrvGrkpvllvglfifvlsqllfals......snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsag.ialgpilGpllGavlaqalgwralflilallallafilllfllpeT 141
                  +v+   + l++d  Gr++++l +  ++++s ++++l+      + ++++++   + Gf  +   ++   ++a++++ ++++va++l s    a+ +i+G ++  ++ ++lg  + f+   ++ +++f+  lf+lpeT
  MMETSP1061-20121228|47755_1 474 VVATYAALLVMDSTGRRSLILWSAGLMFISCIIVTLAllgvlnNAFALMAVNLYVFGFEIGLG-PIPWLIVAEMFDGKYVTVAMSLCSQLnWACNFIVGMVF-PYINEYLGP-YSFFPFTVVLAATFLFALFVLPET 607
                  44444444446**************************99999888888888889999998875.4445689***************9965278889999999.588899888.99999999999999999*****98 PP

>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.5   4.3     1e-10   3.9e-08      34     165 ..     223     353 ..     214     364 .. 0.91
   2 ?   -3.0   4.7       1.6   5.9e+02     275     370 ..     483     578 ..     436     593 .. 0.66

  Alignments for each domain:
  == domain 1    score: 30.5 bits;  conditional E-value: 1e-10
    TIGR00881  34 lllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfssslwvliallalnGlfqglgwppcgrlltkwfsrserGtvvaiwnishnvggallpplvllaialllswhvvfivpgiiaiivsl 165
                  l +saf+i   ++  + g ++D+ + r  ++ig+ +  +  l++ +++ +  +i+++++ G++ g   +++  +l +  ++s rGt+  +   +  +g +l + lv++ +a   +w+v+f ++++ia+   l
  MMETSP1061-20121228|47755_1 223 LAVSAFAIGGPFGSGMGGKLADKRGRRGAMLIGIWMFLLGGLIQTVAQDMLTIILARFIIGFASGYTTVLVPVYLGEVAPPSLRGTLGTLTQFALVIG-ILFADLVAFPFATPTRWRVMFSFTATIAVGQLL 353
                  67899999999***************************************************************************999999988776.66666**********************997655 PP

  == domain 2    score: -3.0 bits;  conditional E-value: 1.6
    TIGR00881 275 lsDklfkgrraplavifmaliivsllvywlivaanklvvlillfvlGflvyGpil....ligvaaselapkkaiGtaaglvglfaylggilaglplgyla 370
                  + D      r++l +  + l+++s ++++l      l  + +l+++ ++v+G+ +    + +++++e+   k +  a  l + +     +++g+++ y+ 
  MMETSP1061-20121228|47755_1 483 VMD---STGRRSLILWSAGLMFISCIIVTLALL-GVLNNAFALMAVNLYVFGFEIglgpIPWLIVAEMFDGKYVTVAMSLCSQLNWACNFIVGMVFPYIN 578
                  444...334556666667777777777777333.335555566666666666653222267788888877777777777777777766677777766665 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   6.2   5.8e-08   2.2e-05      44     116 ..     223     295 ..     214     376 .. 0.80
   2 ?   -0.1   4.8      0.27     1e+02      64     185 ..     484     609 ..     426     625 .. 0.71

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 5.8e-08
    TIGR00710  44 ltltlyllglavgqLllGplsDsyGRkpvlLlgllvfalsslvlalsenietllvlRflqafgasaalVisqa 116
                  l+ +++++g  +g  + G+l+D+ GR+  +L+g+ +f l+ l+ ++++ + t++ +Rf+ +f+   + V++  
  MMETSP1061-20121228|47755_1 223 LAVSAFAIGGPFGSGMGGKLADKRGRRGAMLIGIWMFLLGGLIQTVAQDMLTIILARFIIGFASGYTTVLVPV 295
                  567899999999***************************************************9999888765 PP

  == domain 2    score: -0.1 bits;  conditional E-value: 0.27
    TIGR00710  64 sDsyGRkpvlLlgllvfalsslvlals.....enietllvlR.flqafgasaalVisqalvrDiyakeelskvysilmlllalaPllapliGgyvlvflsWhaiFavlsligillvaliflllpeTka 185
                   Ds GR+  +L    +  +s ++++l+     +n+  l+++  ++ +f    + + +  +v  ++ ++ + + +s+ + l      +  ++  y+ ++l+    F  ++++  +  + + ++lpeT+ 
  MMETSP1061-20121228|47755_1 484 MDSTGRRSLILWSAGLMFISCIIVTLAllgvlNNAFALMAVNlYVFGFEIGLGPIPWL-IVAEMFDGKYVTVAMSLCSQLNWACNFIVGMVFPYINEYLGPYSFFP-FTVVLAATFLFALFVLPETQG 609
                  4777888877776555555555544322222266666666652467777777766664.67778887777777887777777777777777777777777655443.334444444455567777765 PP

>> TIGR00711  efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   6.8   2.6e-07   9.7e-05      56     180 ..     238     362 ..     184     379 .. 0.85
   2 ?   -2.9   1.2       1.2   4.5e+02     313     363 ..     482     534 ..     462     562 .. 0.51

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.6e-07
    TIGR00711  56 ltgwlakrlgerklflvsvlaFtlssllcgvannlelliifRviQgfggglliplseslllseyppekrglalalvglavlvaPvlGPiLgGwiieayeWrwiFlinvpiGiivvvvallilkee 180
                  + g la++ g+r   l+++ +F l+ l+ +va+++ ++i++R i gf  g  ++l+   l + +pp+ rg+  +l  +a++++  +    +        Wr +F     i +  ++++ ++l+++
  MMETSP1061-20121228|47755_1 238 MGGKLADKRGRRGAMLIGIWMFLLGGLIQTVAQDMLTIILARFIIGFASGYTTVLVPVYLGEVAPPSLRGTLGTLTQFALVIGILFADLVAFPFATPTRWRVMFSFTATIAVGQLLLSPFLLESP 362
                  567799999*********************************************************************99999999999988899999999999999999998888888888765 PP

  == domain 2    score: -2.9 bits;  conditional E-value: 1.2
    TIGR00711 313 rladkidlrllvliglilyavglyliavkl..epdtdfleillkllirglgls 363
                   ++d  + r l+l +  l+ +++ ++++ l    +  f+ ++++l + g+ ++
  MMETSP1061-20121228|47755_1 482 LVMDSTGRRSLILWSAGLMFISCIIVTLALlgVLNNAFALMAVNLYVFGFEIG 534
                  23444444444444444444444333333311224444445555555555555 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.2   3.1   1.8e-05    0.0066     213     315 ..     230     332 ..     186     384 .. 0.82
   2 ?    0.2   0.7     0.072        27     605     644 ..     466     509 ..     458     576 .. 0.75

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.8e-05
    TIGR01299 213 lgmmvgaflwggladklgrkqsllislsvnsvfaflssfvqgygtfllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwm.iggvyaaamawaii 315
                  +g   g+ + g ladk gr+ ++li + +  +  ++ +  q   t++l+r++ g+  g +  +v  y+ ev     rg  l  l  f + ig ++a  +a+   
  MMETSP1061-20121228|47755_1 230 IGGPFGSGMGGKLADKRGRRGAMLIGIWMFLLGGLIQTVAQDMLTIILARFIIGFASGYTTVLVPVYLGEVAPPSLRGT-LGTLTQFALvIGILFADLVAFPFA 332
                  455567778899*****************************************************************96.677777765156667777776544 PP

  == domain 2    score: 0.2 bits;  conditional E-value: 0.072
    TIGR01299 605 tlavlpgnivs....allmdkigrlrmlagssvlsgvscfflsf 644
                  t  +   n+v+     l+md  gr  ++  s+ l  +sc+++++
  MMETSP1061-20121228|47755_1 466 TTVIGAVNVVAtyaaLLVMDSTGRRSLILWSAGLMFISCIIVTL 509
                  5444455555312114789*****99998777777777776543 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (674 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       298  (0.0726475); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                        11  (0.00268162); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              11  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.37
# Mc/sec: 2404.34
//
Query:       MMETSP1061-20121228|47758_1  [L=139]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.027   11.2   6.9      0.027   11.2   4.8    1.0  1  TIGR00867 deg-1: degenerin
        1.6    7.1  14.0        2.4    6.5   9.2    1.7  1  TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding domain


Domain annotation for each model (and alignments):
>> TIGR00867  deg-1: degenerin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   4.8   1.3e-05     0.027     192     296 ..       3     122 ..       1     138 [. 0.61

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 1.3e-05
    TIGR00867 192 aawpCfsastweekkcsecddnglCekkdkk.gaeeekkpClCekeaaskycvake.deskveeikeykeekllateskit.............eeaketlealgf.eeltdevalttkak 296
                  + + C   ++  +kkcs c+   +C+ + +k + +++++ C  e + + +y ++k+  ++ +e+ ++ +e+  +++ + +t             +  +e++ea+ f e ++  ++ +tka 
  MMETSP1061-20121228|47758_1   3 VKRKCQACQKEASKKCSRCNLAWYCSVECQKkDWKKHRSVCNSEFQSN-QYELHKKaFDAIIEKYNLKTEKRSSEIAELLTngtdgvnaakfaeKFGMEVQEAVVFlEWIKVGIDFKTKAI 122
                  6789*********************98876504555556666655544.444444404555555666666666666665557888877777776333444444333133445555555554 PP

>> TIGR04085  rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.5   9.2    0.0011       2.4      47      85 ..       7      42 ..       1      52 [. 0.77

  Alignments for each domain:
  == domain 1    score: 6.5 bits;  conditional E-value: 0.0011
    TIGR04085 47 fkelkkekklekeeCkkCkalplCgGgCpaealeeegdl 85
                 ++ ++k   + +++C++C++  +C+ +C+++ +++++++
  MMETSP1061-20121228|47758_1  7 CQACQK---EASKKCSRCNLAWYCSVECQKKDWKKHRSV 42
                 444442...4899******************99986654 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (139 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       254  (0.061921); expected 82.0 (0.02)
Passed bias filter:                      155  (0.0377864); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 873.64
//
Query:       MMETSP1061-20121228|47757_1  [L=564]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.6e-15   51.3   0.0    1.4e-14   50.8   0.0    1.1  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    6.1e-08   30.2   0.1    1.5e-07   28.9   0.0    1.7  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.8   0.0   6.7e-18   1.4e-14      22     179 ..     129     274 ..     109     284 .. 0.87

  Alignments for each domain:
  == domain 1    score: 50.8 bits;  conditional E-value: 6.7e-18
    TIGR03903  22 vaRFrReialCarLshPnivaLlDsGeaedgllFavFeyveGrtlrevLaadGaLpaaetgrLmlqvLDalaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLiv 179
                  v   r ei++ + + hPniv+L +    +   ++ + e+ +G  l  +L      +a  tg+L    L a+   hd+ +vhRDLk +nim  ++  e + kv+DFG++       +   +++    e +G+    aP  L g   t+++D+++ G+i 
  MMETSP1061-20121228|47757_1 129 VEELRNEIEILKTMDHPNIVKLHEVFSYKK-QMYLILELCDGGDLYTRLPYTEKASAYITGKL----LSAIKYMHDHAIVHRDLKFENIMFENNSPEAEIKVIDFGLSK------KFVSNKMGYMREGVGTLYSMAPQVLQG-IYTSQADMWSVGVIS 274
                  567899***************988877776.99******************99********98....6799***********************************985......44557889999*****98889988887.68**********996 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.0   7.4e-11   1.5e-07      44     138 ..     132     233 ..     118     275 .. 0.79

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 7.4e-11
    TIGR03724  44 trkEarllseakkag.vntPvvydvdpeekkivmeyiegkklkdlleekel...ellkevGelvgklHkagivhgDlttsNiivk....ddklyliDfGLgkk 138
                   r+E+ +l+++ +   v+   v++++ +++ +++e  +g +l + l  +e+    ++ ++  ++  +H++ ivh Dl  +Ni+++    + ++ +iDfGL+kk
  MMETSP1061-20121228|47757_1 132 LRNEIEILKTMDHPNiVKLHEVFSYK-KQMYLILELCDGGDLYTRLPYTEKasaYITGKLLSAIKYMHDHAIVHRDLKFENIMFEnnspEAEIKVIDFGLSKK 233
                  67888888888776514555555555.559999*********999887777343555566667889******************855666789********97 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (564 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.30
# Mc/sec: 2481.40
//
Query:       MMETSP1061-20121228|47762_1  [L=114]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (114 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 683.94
//
Query:       MMETSP1061-20121228|47760_1  [L=391]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (391 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.13s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1984.91
//
Query:       MMETSP1061-20121228|47765_1  [L=264]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (264 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.13s 00:00:00.30 Elapsed: 00:00:00.26
# Mc/sec: 1340.20
//
Query:       MMETSP1061-20121228|47764_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.016   12.9   0.0      0.055   11.2   0.0    1.9  2  TIGR00454 TIGR00454: TIGR00454 family protein
       0.03   12.2   0.2      0.054   11.3   0.1    1.4  1  TIGR02665 molyb_mobA: molybdopterin-guanine dinucleotide biosynthesis protein A


Domain annotation for each model (and alignments):
>> TIGR00454  TIGR00454: TIGR00454 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.2   0.0   2.7e-05     0.055       2      43 ..     100     146 ..      99     173 .. 0.70
   2 ?   -2.8   0.0      0.51     1e+03      53      83 ..     407     438 ..     403     442 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.2 bits;  conditional E-value: 2.7e-05
    TIGR00454   2 lalvmaGGkGtrlgr.vekPllev...cGrklidhvlealkkak.vd 43 
                   alv+aGG+Gtrlg  + k + ++   +Gr+l     e l+  k v 
  MMETSP1061-20121228|47764_1 100 AALVLAGGQGTRLGFsGPKGMYDIglpSGRTLFQLLAERLQRLKtVA 146
                  69************978999988854558888777766666655443 PP

  == domain 2    score: -2.8 bits;  conditional E-value: 0.51
    TIGR00454  53 tPkt.eeyvaekykefkrasGkGyiedlrevl 83 
                   P t + y++++ +++  a+G+    dl+  +
  MMETSP1061-20121228|47764_1 407 SPDTaRAYLSKQAQKWVVAAGGNLTGDLDSSC 438
                  45442579999999999999999999988766 PP

>> TIGR02665  molyb_mobA: molybdopterin-guanine dinucleotide biosynthesis protein A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.3   0.1   2.7e-05     0.054       2      38 ..     100     140 ..      99     146 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.3 bits;  conditional E-value: 2.7e-05
    TIGR02665   2 sgviLAGGrarRMg.gedKglvelr...gkpLiehvlerlr 38 
                  ++++LAGG+++R+g +  Kg+ +++   g++L++ ++erl+
  MMETSP1061-20121228|47764_1 100 AALVLAGGQGTRLGfSGPKGMYDIGlpsGRTLFQLLAERLQ 140
                  689**********96569***99843348888888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.27
# Mc/sec: 2278.03
//
Query:       MMETSP1061-20121228|47767_1  [L=1068]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1068 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       140  (0.0341297); expected 82.0 (0.02)
Passed bias filter:                      122  (0.0297416); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.49u 0.13s 00:00:00.62 Elapsed: 00:00:00.28
# Mc/sec: 4860.84
//
Query:       MMETSP1061-20121228|47768_1  [L=1203]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1203 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       459  (0.111897); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.59u 0.16s 00:00:00.75 Elapsed: 00:00:00.47
# Mc/sec: 3378.36
//
Query:       MMETSP1061-20121228|47769_1  [L=638]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (638 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       188  (0.0458313); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.20s 00:00:00.45 Elapsed: 00:00:00.30
# Mc/sec: 2806.97
//
Query:       MMETSP1061-20121228|47771_1  [L=1080]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-38  127.7   1.6    7.1e-30  101.6   0.0    3.7  3  TIGR02956 TMAO_torS: TMAO reductase sytem sensor TorS
      1e-19   68.6   9.0    8.5e-11   39.2   0.6    3.8  4  TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR
    6.2e-13   46.3   0.4    8.6e-08   29.4   0.0    3.4  3  TIGR01386 cztS_silS_copS: heavy metal sensor kinase
    7.9e-07   26.4   0.0    1.7e-06   25.3   0.0    1.5  1  TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB
    5.3e-05   19.8   3.7     0.0012   15.3   2.6    2.1  1  TIGR02916 PEP_his_kin: putative PEP-CTERM system histidine kinase
    6.4e-05   20.5   0.0    0.00012   19.6   0.0    1.4  1  TIGR01387 cztR_silR_copR: heavy metal response regulator
    0.00032   17.2   0.1    0.00055   16.4   0.1    1.3  1  TIGR02938 nifL_nitrog: nitrogen fixation negative regulator NifL
     0.0012   15.6   0.0     0.0018   14.9   0.0    1.3  1  TIGR01818 ntrC: nitrogen regulation protein NR(I)


Domain annotation for each model (and alignments):
>> TIGR02956  TMAO_torS: TMAO reductase sytem sensor TorS
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.0   7.6e-06    0.0039     458     493 ..     545     580 ..     538     591 .. 0.86
   2 !    9.4   0.1    0.0001     0.053     514     566 ..     637     689 ..     617     704 .. 0.90
   3 !  101.6   0.0   1.4e-32   7.1e-30     546     814 ..     710    1033 ..     702    1063 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 7.6e-06
    TIGR02956 458 eeAnrAKSaFLAtmSHEiRTPlnGvlGTleLLadtk 493
                  e+  +AK  F    SHE+RTPln v   l+LL++  
  MMETSP1061-20121228|47771_1 545 EKLLEAKRRFVRFVSHEVRTPLNTVCMGLTLLQNDM 580
                  66679********************9999**99865 PP

  == domain 2    score: 9.4 bits;  conditional E-value: 0.0001
    TIGR02956 514 diLnDiLDySkiEaGhlsiserafdlskLledvlhlmesraqekgiqLsleid 566
                   +L+D+L y ki  G ls++   +++ + le++++ ++  a+e+ ++L +++ 
  MMETSP1061-20121228|47771_1 637 GVLSDLLNYDKIQMGTLSLELSLINMWSALEKTVEEFQVSAKENLVSLEMDFT 689
                  69**********************************************99986 PP

  == domain 3    score: 101.6 bits;  conditional E-value: 1.4e-32
    TIGR02956  546 vlhlmesraqekgiqLsleidedlpevlqgDlsrirQvliNlvgNaiKFTdr.Gsvvlrvslndds........................llfeVeDtGvGiaeeeqetlFkaftqae.gr.kksgGTGLGLAiskrlveamdgelsveSe.lgkGScFafelpl..ergk..kaeksat.kevidvppa......................rvLlvEDNevnamvaqglleklGhkvtlaesgksA....leclee.kaFDlallDinLpDtdGvtLlkqLkeleeakeelkfiavsAhvfnedvekylaagFdgflaKPlsekqLva 814 
                   v +l++ r   k   L  +i ++    ++gD++r+ Qv  Nl++N+ KF ++   +++rvs++                           + +eV+D G G+ +e+ +t+F+  tq + ++ +  gG GLGL i++ +v   +g+l+ +Se lg+G +F++   l  ++    ++e s   ++ + + +                       rvL+v+D   n ++ q lle+ Gh    a +g++A    +e++++ k +D +llD ++p ++G +  + ++++  +     +++v+ +v++edv+++++ g + +l+KP   k L  
  MMETSP1061-20121228|47771_1  710 VEELVTNRPPLKASDLPAKILNNC--KVVGDKIRLIQVFRNLISNGLKFSNEnTRMTIRVSVDSLPerkqkqenvslhkdivaevtkvgsISVEVIDEGAGMTQEQVDTVFEDGTQFDrNKlQAGGGSGLGLNIARGIVLEHGGTLTCSSEgLGRGTTFTLCTALylDNNPtlPNEMSPGhRQSKALSSEyvehmsdeengleyeeftiphfRVLVVDDSVTNRKLCQRLLERNGHTTEGACNGEEAvamvKEAMANgKFYDCILLDYEMPVMNGPDACQLMRKMGCSS---YIAGVTGNVMSEDVDHFRNCGANWVLPKPFRLKALED 1033
                   555555555555555555555332..3689*******************9862578888888743234778999********************************************8651566789**********************8689*****986544114332113333322367777776688889**********************************************99999844446788887889****************999999999884...5899***************************999963 PP

>> TIGR02966  phoR_proteo: phosphate regulon sensor kinase PhoR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.2   0.0   1.4e-05    0.0072     107     140 ..     544     577 ..     528     591 .. 0.77
   2 ?   -0.6   0.1      0.22   1.1e+02     167     217 ..     638     688 ..     618     716 .. 0.86
   3 !   18.8   0.1   2.8e-07   0.00015     213     257 ..     725     769 ..     691     777 .. 0.88
   4 !   39.2   0.6   1.7e-13   8.5e-11     259     331 ..     795     868 ..     777     870 .. 0.92

  Alignments for each domain:
  == domain 1    score: 13.2 bits;  conditional E-value: 1.4e-05
    TIGR02966 107 lkrleqmRrdFvanvsHELrtPLtvlkGyletle 140
                   ++l + +r Fv  vsHE rtPL  +   l +l+
  MMETSP1061-20121228|47771_1 544 KEKLLEAKRRFVRFVSHEVRTPLNTVCMGLTLLQ 577
                  5788899999*************65544455554 PP

  == domain 2    score: -0.6 bits;  conditional E-value: 0.22
    TIGR02966 167 LvedLltLsrlEsaakekeeekvdvaelleelkkeaealseekehqielev 217
                  ++ dLl+  ++   + + e + +++ + le++ +e+++ ++e+ +++e++ 
  MMETSP1061-20121228|47771_1 638 VLSDLLNYDKIQMGTLSLELSLINMWSALEKTVEEFQVSAKENLVSLEMDF 688
                  6899*********************************99999966666655 PP

  == domain 3    score: 18.8 bits;  conditional E-value: 2.8e-07
    TIGR02966 213 ielevdaavkvkgdeeeLrsalsNLveNAikytpeggeitvrwee 257
                  +  ++ ++ kv gd+ +L ++++NL++N +k+++e++++t+r++ 
  MMETSP1061-20121228|47771_1 725 LPAKILNNCKVVGDKIRLIQVFRNLISNGLKFSNENTRMTIRVSV 769
                  556777899****************************99998765 PP

  == domain 4    score: 39.2 bits;  conditional E-value: 1.7e-13
    TIGR02966 259 eegaelsvkDtGeGIaaehlprltERFYRvdksrsretgGtGLGLaIvkHvlerheaeLeieSe.lgkGstFsv 331
                   +++ ++v D+G+G+ +e++  ++E     d+++ ++ gG+GLGL I + ++ +h ++L+ +Se lg+G+tF++
  MMETSP1061-20121228|47771_1 795 VGSISVEVIDEGAGMTQEQVDTVFEDGTQFDRNKLQAGGGSGLGLNIARGIVLEHGGTLTCSSEgLGRGTTFTL 868
                  456899*********************************************************978******86 PP

>> TIGR01386  cztS_silS_copS: heavy metal sensor kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.1   0.0      0.12        64     243     259 ..     553     569 ..     544     583 .. 0.76
   2 !   12.1   0.0   2.9e-05     0.015     343     381 ..     731     769 ..     722     775 .. 0.90
   3 !   29.4   0.0   1.7e-10   8.6e-08     384     454 ..     796     868 ..     786     871 .. 0.91

  Alignments for each domain:
  == domain 1    score: 0.1 bits;  conditional E-value: 0.12
    TIGR01386 243 qFsadlAHelRtPltnL 259
                  +F   + He+RtPl+  
  MMETSP1061-20121228|47771_1 553 RFVRFVSHEVRTPLNTV 569
                  4555589*******875 PP

  == domain 2    score: 12.1 bits;  conditional E-value: 2.9e-05
    TIGR01386 343 geaevegdaqlfrRalsNLlsNAlrytpegstievrver 381
                   +++v gd+  +  ++ NL+sN l+++ e++++++rv  
  MMETSP1061-20121228|47771_1 731 NNCKVVGDKIRLIQVFRNLISNGLKFSNENTRMTIRVSV 769
                  5799*******************************9975 PP

  == domain 3    score: 29.4 bits;  conditional E-value: 1.7e-10
    TIGR01386 384 devevsventgkgipeeelsrlFdRFYRvdaarsnseegtGLGLaIvrsiveaHgGeveaes..adgktrfkl 454
                  + ++v+v ++g g+ +e+ + +F+     d+ + +++ g+GLGL I r iv  HgG++ ++s    + t+f+l
  MMETSP1061-20121228|47771_1 796 GSISVEVIDEGAGMTQEQVDTVFEDGTQFDRNKLQAGGGSGLGLNIARGIVLEHGGTLTCSSegLGRGTTFTL 868
                  67899********************************************************975677788887 PP

>> TIGR02154  PhoB: phosphate regulon transcriptional regulatory protein PhoB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.3   0.0   3.4e-09   1.7e-06       4     112 ..     920    1031 ..     918    1034 .. 0.87

  Alignments for each domain:
  == domain 1    score: 25.3 bits;  conditional E-value: 3.4e-09
    TIGR02154    4 rilvvedeeairellaynlekegyevveaedaeealalikeelP.....dlilldWmlpgtsGielarrlrkeeetreiPiimltargeeedrvrgletGaddyvvkPfspkel 112 
                   r+lvv+d  + r+l +  le++g+++  a ++eea+a++ke++      d illd+ +p + G + ++ +rk      i  +     +e+ d+ r  + Ga+  + kPf  k l
  MMETSP1061-20121228|47771_1  920 RVLVVDDSVTNRKLCQRLLERNGHTTEGACNGEEAVAMVKEAMAngkfyDCILLDYEMPVMNGPDACQLMRKMGCSSYIAGVTGNVMSEDVDHFR--NCGANWVLPKPFRLKAL 1031
                   79*************************************99764333349**********************99999988887777777777776..78999888999987765 PP

>> TIGR02916  PEP_his_kin: putative PEP-CTERM system histidine kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   2.6   2.3e-06    0.0012     608     677 ..     794     869 ..     652     870 .. 0.83

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 2.3e-06
    TIGR02916 608 ekeaavieieDsGqGmseeFirerLFk...PFdttKk...aGmGiGvyesreyveelGGeieveSt.pgkGtiftlv 677
                  + +++++e+ D G Gm++e + + +F+    Fd  K     G G+G+  +r +v e+GG+++ +S+  g+Gt+ftl+
  MMETSP1061-20121228|47771_1 794 KVGSISVEVIDEGAGMTQEQV-DTVFEdgtQFDRNKLqagGGSGLGLNIARGIVLEHGGTLTCSSEgLGRGTTFTLC 869
                  3367899************95.778852336999996533578999*******************945*******95 PP

>> TIGR01387  cztR_silR_copR: heavy metal response regulator
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.6   0.0   2.4e-07   0.00012       1     105 [.     921    1030 ..     921    1034 .. 0.83

  Alignments for each domain:
  == domain 1    score: 19.6 bits;  conditional E-value: 2.4e-07
    TIGR01387    1 ilvvedeqktaeylqqGlsesGyvvdivsnGrdGlhl.....aekddydliildvmlpgldGwevlkalresaketpvllltardevadkvkGlelGaddylvkpfefae 105 
                   +lvv+d     +  q+ l  +G+  + + nG++ + +     a+ + yd i+ld  +p ++G +  + +r+ +    +  +t +   +d  +  + Ga+  l kpf +  
  MMETSP1061-20121228|47771_1  921 VLVVDDSVTNRKLCQRLLERNGHTTEGACNGEEAVAMvkeamANGKFYDCILLDYEMPVMNGPDACQLMRKMGCSSYIAGVTGNVMSEDVDHFRNCGANWVLPKPFRLKA 1030
                   688988888888888888899************99762221155678************************9999988888887766666666689**********8765 PP

>> TIGR02938  nifL_nitrog: nitrogen fixation negative regulator NifL
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.4   0.1   1.1e-06   0.00055     386     477 ..     759     854 ..     735     862 .. 0.78

  Alignments for each domain:
  == domain 1    score: 16.4 bits;  conditional E-value: 1.1e-06
    TIGR02938 386 srlrslfkalvdnaieama.qkqvkrrelsistaveddlirveiedsGPGiPadlrlkvfeP...ffttkassrkhvGmGlavaqeivakhaGlid 477
                  ++ r+ ++  vd   e  + q++v+     ++  ++   i ve+ d G G+ ++ +  vfe    f   k   + + G+Gl +a+ iv +h+G + 
  MMETSP1061-20121228|47771_1 759 ENTRMTIRVSVDSLPERKQkQENVSLHKDIVAEVTKVGSISVEVIDEGAGMTQEQVDTVFEDgtqFDRNKLQAGGGSGLGLNIARGIVLEHGGTLT 854
                  556666666666655544313345555555666777789*********************9544377889999********************876 PP

>> TIGR01818  ntrC: nitrogen regulation protein NR(I)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   3.6e-06    0.0018       1     105 [.     921    1030 ..     921    1064 .. 0.82

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 3.6e-06
    TIGR01818    1 vlvvdddrsirtvlekalaeaglevrtfdnaasvlralareqp.....dllitdvrmPgedgldllkkikkrrPklpvivmsahsdldaavkayqr.GafeylpkPfdlde 105 
                   vlvvdd  + r + ++ l+++g++++   n+++++ ++++  +     d ++ d  mP ++g d  + ++k+  +  +  ++  + +   v+ +++ Ga   lpkPf l+ 
  MMETSP1061-20121228|47771_1  921 VLVVDDSVTNRKLCQRLLERNGHTTEGACNGEEAVAMVKEAMAngkfyDCILLDYEMPVMNGPDACQLMRKMGCSSYIAGVT-GNVMSEDVDHFRNcGANWVLPKPFRLKA 1030
                   79************************999998888777654221233499***************99999998887666555.5667778888875489999*****9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1080 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         8  (0.00195027); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 0.41u 0.36s 00:00:00.77 Elapsed: 00:00:00.49
# Mc/sec: 2909.15
//
Query:       MMETSP1061-20121228|47766_1  [L=372]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.7e-27   92.9   1.3    1.5e-15   54.5   0.0    2.1  2  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    8.1e-24   81.8   1.1    2.4e-16   57.2   0.0    2.3  2  TIGR00717 rpsA: ribosomal protein S1
    6.8e-13   45.7   4.1    1.9e-07   27.7   0.3    2.1  2  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    6.8e-07   26.9   0.4     0.0037   14.7   0.0    2.6  2  TIGR00448 rpoE: DNA-directed RNA polymerase
    3.4e-06   23.5   3.8    0.00026   17.2   0.5    2.4  2  TIGR02063 RNase_R: ribonuclease R
  ------ inclusion threshold ------
      0.016   12.0   0.1      0.043   10.5   0.0    1.7  1  TIGR00757 RNaseEG: ribonuclease, Rne/Rng family
        8.9    3.7   8.7         16    2.9   6.0    1.3  1  TIGR02642 phage_xxxx: uncharacterized phage protein


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.5   0.0   2.5e-18   1.5e-15     614     687 ..     123     197 ..     104     199 .. 0.91
   2 !   37.5   0.1   3.7e-13   2.2e-10     619     686 ..     239     314 ..     225     317 .. 0.83

  Alignments for each domain:
  == domain 1    score: 54.5 bits;  conditional E-value: 2.5e-18
    TIGR03591 614 aevevgkvyegkvvkiadfgafvellpgkdglvhiSelaeervekvedvlkegdevkvkvleidk.kgrvklsrk 687
                  +e   g++ +g+v++i+ +gafv++  ++dgl+h+S+l+   v++v+++++eg+ev v++++id+ kg++ ls+ 
  MMETSP1061-20121228|47766_1 123 SEFAEGTTVKGTVKSITTYGAFVDIGASTDGLLHVSQLSAGFVSDVSEIVSEGQEVDVRIVKIDSgKGQIGLSMM 197
                  56678999********************************************************97899999985 PP

  == domain 2    score: 37.5 bits;  conditional E-value: 3.7e-13
    TIGR03591 619 gkvyegkvvkiadfgafvellpgk.........dglvhiSelaeervekvedvlkegdevkvkvleidkkgrvklsr 686
                   ++ eg+vv+++dfgafv++  ++         dglvhiS l+  rv +v+dv++ +d+v+v++ +id   +v+l++
  MMETSP1061-20121228|47766_1 239 STMVEGTVVSTVDFGAFVKIDASTlnsecegsfDGLVHISALKVGRVGAVTDVVNANDTVQVRCKSID-GTKVSLTM 314
                  57889*************9854332233334449**********************************.68888887 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   57.2   0.0   4.1e-19   2.4e-16     180     257 ..     120     198 ..      91     203 .. 0.87
   2 !   23.1   0.2   9.1e-09   5.3e-06     188     251 ..     239     312 ..     228     324 .. 0.82

  Alignments for each domain:
  == domain 1    score: 57.2 bits;  conditional E-value: 4.1e-19
    TIGR00717 180 elleklkegeevkGvVknitdfgafvdlg.gvdgllhitdlswkrvkhPseivevgdevkvkvikvDkekkrislslkq 257
                  + l++  eg++vkG Vk+it +gafvd g + dgllh+++ls + v   seiv +g+ev v+++k+D  k++i ls+  
  MMETSP1061-20121228|47766_1 120 KDLSEFAEGTTVKGTVKSITTYGAFVDIGaSTDGLLHVSQLSAGFVSDVSEIVSEGQEVDVRIVKIDSGKGQIGLSMMT 198
                  45788999*******************98468*******************************************9865 PP

  == domain 2    score: 23.1 bits;  conditional E-value: 9.1e-09
    TIGR00717 188 geevkGvVknitdfgafvd..........lggvdgllhitdlswkrvkhPseivevgdevkvkvikvDkekkri 251
                   + v+G V++  dfgafv+          +g++dgl+hi+ l  +rv   +++v+ +d+v+v+ +++D  k  +
  MMETSP1061-20121228|47766_1 239 STMVEGTVVSTVDFGAFVKidastlnsecEGSFDGLVHISALKVGRVGAVTDVVNANDTVQVRCKSIDGTKVSL 312
                  5789*************973333333333478************************************887544 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.7   0.3   3.3e-10   1.9e-07     649     718 ..     128     194 ..     110     196 .. 0.89
   2 !   19.4   0.2     1e-07     6e-05     653     718 ..     243     312 ..     219     314 .. 0.78

  Alignments for each domain:
  == domain 1    score: 27.7 bits;  conditional E-value: 3.3e-10
    TIGR02696 649 gerflgtvvkttafgafvsllpgkdgllhiseirkladgkrvekvedvlsvgekikveiadidd.rgklsl 718
                  g    gtv   t++gafv +    dgllh+s   +l+ g  v +v +++s g+ + v i +id+ +g++ l
  MMETSP1061-20121228|47766_1 128 GTTVKGTVKSITTYGAFVDIGASTDGLLHVS---QLSAG-FVSDVSEIVSEGQEVDVRIVKIDSgKGQIGL 194
                  56677999999********************...67777.69*********************74677765 PP

  == domain 2    score: 19.4 bits;  conditional E-value: 1e-07
    TIGR02696 653 lgtvvkttafgafv....sllpgk.....dgllhiseirkladgkrvekvedvlsvgekikveiadiddrgklsl 718
                   gtvv t+ fgafv    s l        dgl+his    l+ g rv +v dv++  + ++v  + id   k+sl
  MMETSP1061-20121228|47766_1 243 EGTVVSTVDFGAFVkidaSTLNSEcegsfDGLVHIS---ALKVG-RVGAVTDVVNANDTVQVRCKSIDG-TKVSL 312
                  59***********9444433432233335*******...56666.79********************96.46666 PP

>> TIGR00448  rpoE: DNA-directed RNA polymerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   6.3e-06    0.0037      84     116 ..     130     163 ..     125     170 .. 0.87
   2 !    9.5   0.0   0.00025      0.15      83     112 ..     240     279 ..     217     307 .. 0.84

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 6.3e-06
    TIGR00448  84 iveGevieivefGafvslGp.lddllhvsqvldd 116
                   v+G v  i+ +Gafv +G   d+llhvsq+   
  MMETSP1061-20121228|47766_1 130 TVKGTVKSITTYGAFVDIGAsTDGLLHVSQLSAG 163
                  699****************647********9765 PP

  == domain 2    score: 9.5 bits;  conditional E-value: 0.00025
    TIGR00448  83 eiveGevieivefGafvsl..........Gplddllhvsq 112
                   +veG v+  v+fGafv++          G +d+l+h+s 
  MMETSP1061-20121228|47766_1 240 TMVEGTVVSTVDFGAFVKIdastlnseceGSFDGLVHISA 279
                  68***************98666666666667777777775 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.2   0.5   4.5e-07   0.00026     629     710 ..     128     197 ..     108     198 .. 0.87
   2 !    6.5   0.1   0.00079      0.46     633     663 ..     243     281 ..     240     283 .. 0.76

  Alignments for each domain:
  == domain 1    score: 17.2 bits;  conditional E-value: 4.5e-07
    TIGR02063 629 GeefegvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvGertgkvfrlGdevkvkvvevdkeekkidfelv 710
                  G + +g + s+t++G Fv +   + +GL h+s+L+     f ++   +v+e        G+ev+v++v++d  +++i ++++
  MMETSP1061-20121228|47766_1 128 GTTVKGTVKSITTYGAFVDIGA-STDGLLHVSQLSAG---FVSDVSEIVSE--------GQEVDVRIVKIDSGKGQIGLSMM 197
                  78899****************9.9**********954...44445555554........89999999999999999998886 PP

  == domain 2    score: 6.5 bits;  conditional E-value: 0.00079
    TIGR02063 633 egvissvtsfGlFveLeent........ieGLvhissLk 663
                  eg ++s + fG Fv+++ +t        ++GLvhis+Lk
  MMETSP1061-20121228|47766_1 243 EGTVVSTVDFGAFVKIDASTlnsecegsFDGLVHISALK 281
                  8999***********997642222223379******997 PP

>> TIGR00757  RNaseEG: ribonuclease, Rne/Rng family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.0   7.4e-05     0.043      28     101 ..     129     188 ..     120     200 .. 0.75

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 7.4e-05
    TIGR00757  28 niykgkvtrvlpslqaaFvdigeekegflhlsdilknseklepaeakreaekkieellkegqevlVQvvkeeig 101
                     kg v+ +     +aFvdig++ +g+lh+s++                 ++++e+++egqev V +vk + g
  MMETSP1061-20121228|47766_1 129 TTVKGTVKSITT--YGAFVDIGASTDGLLHVSQLSAGFV------------SDVSEIVSEGQEVDVRIVKIDSG 188
                  555666666654..58****************9985522............45777777777777777776555 PP

>> TIGR02642  phage_xxxx: uncharacterized phage protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.9   6.0     0.027        16     180     206 ..      46      71 ..      36      80 .. 0.85

  Alignments for each domain:
  == domain 1    score: 2.9 bits;  conditional E-value: 0.027
    TIGR02642 180 esqkCPrCrgtgltlrrqeeCdkCaGt 206
                  + ++CP C g+++  r +  C+kC G+
  MMETSP1061-20121228|47766_1  46 RGCNCPACTGAKT-CRAGCPCPKCTGV 71 
                  5799******985.7999********8 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (372 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       166  (0.0404681); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.18u 0.22s 00:00:00.40 Elapsed: 00:00:00.26
# Mc/sec: 1888.46
//
Query:       MMETSP1061-20121228|47773_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-07   26.4   0.0     0.0031   15.0   0.0    2.1  2  TIGR01262 maiA: maleylacetoacetate isomerase
  ------ inclusion threshold ------
      0.014   13.0   0.0       0.41    8.2   0.0    2.0  2  TIGR02182 GRXB: glutaredoxin, GrxB family


Domain annotation for each model (and alignments):
>> TIGR01262  maiA: maleylacetoacetate isomerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.0   0.0   1.5e-06    0.0031      10      80 ..      36     111 ..      32     137 .. 0.73
   2 !    9.6   0.0   6.9e-05      0.14     150     203 ..     167     222 ..     151     229 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.0 bits;  conditional E-value: 1.5e-06
    TIGR01262  10 asyRvRiaLaLkgidyesvp.vnLlkd..GeqkkeefkalNPq..elvPtLkidegevltqSlAiieyLeetypep 80 
                  +s  + +aL L g + +  p vn  +   G + +  + a+NP   +++P L++d++  + +S Ai++yL  + +e+
  MMETSP1061-20121228|47773_1  36 TSTGLSMALTLYGSQGSRSPlVNWGASeiGLDLTMGNLATNPHpfGQIPCLTDDDNVLVFESGAILQYLYAKAAET 111
                  5555556666666555444435554433666777777788864339*********9999**********9887765 PP

  == domain 2    score: 9.6 bits;  conditional E-value: 6.9e-05
    TIGR01262 150 agafcvGdevtladvcLvpqvynAerf..evdlaqyPtlkrieealaelpafqeah 203
                  +++f v    ++adv +++ +    +f  +v+l+++P + +  +++ae +a+ +a 
  MMETSP1061-20121228|47773_1 167 KQDFLVEGGFSIADVAVASYLLYVPQFfqGVNLSRWPNVVAYMKRCAEREAYGAAF 222
                  57788988999*****99988777665458*********************99885 PP

>> TIGR02182  GRXB: glutaredoxin, GrxB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    8.2   0.0    0.0002      0.41      46      96 ..      82     133 ..      79     140 .. 0.81
   2 ?    2.6   0.0      0.01        21     144     202 ..     152     214 ..     146     218 .. 0.72

  Alignments for each domain:
  == domain 1    score: 8.2 bits;  conditional E-value: 0.0002
    TIGR02182  46 qvPiLqkeDgralaeslDivkyidelagesl.ltdkvseeieewlekvtsyl 96 
                  q+P L+ +D   + es  i++y+ ++a e+    + ++ +i+ w++ +++ l
  MMETSP1061-20121228|47773_1  82 QIPCLTDDDNVLVFESGAILQYLYAKAAETNgDSESRKAAITSWISWANASL 133
                  89*********************99988655145566678999998777665 PP

  == domain 2    score: 2.6 bits;  conditional E-value: 0.01
    TIGR02182 144 eeieadleeleklldeesa.vngelsvddilvfplL....Rnltvvkgiewpskvadyleslse 202
                  ++ ++ ++ l+kll+++   v+g  s+ d+ v + L    + +  v+  +wp++v  y+++ +e
  MMETSP1061-20121228|47773_1 152 KKPNKRIDVLDKLLSKQDFlVEGGFSIADVAVASYLlyvpQFFQGVNLSRWPNVV-AYMKRCAE 214
                  55678899999**99998879**********999772221223344445688766.58888777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1511.88
//
Query:       MMETSP1061-20121228|47774_1  [L=678]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (678 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.22s 00:00:00.47 Elapsed: 00:00:00.37
# Mc/sec: 2418.61
//
Query:       MMETSP1061-20121228|47775_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       189  (0.0460751); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.31
# Mc/sec: 2465.22
//
Query:       MMETSP1061-20121228|47776_1  [L=651]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (651 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       143  (0.034861); expected 82.0 (0.02)
Passed bias filter:                      104  (0.0253535); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.31u 0.14s 00:00:00.45 Elapsed: 00:00:00.31
# Mc/sec: 2771.77
//
Query:       MMETSP1061-20121228|47777_1  [L=314]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (314 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.14s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 1973.55
//
Query:       MMETSP1061-20121228|47779_1  [L=588]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (588 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.29u 0.13s 00:00:00.42 Elapsed: 00:00:00.26
# Mc/sec: 2984.98
//
Query:       MMETSP1061-20121228|47778_1  [L=463]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (463 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.15s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2350.42
//
Query:       MMETSP1061-20121228|47781_1  [L=257]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.28    9.3   5.8      0.075   11.1   1.4    2.0  2  TIGR03758 conj_TIGR03758: integrating conjugative element protein, PFL_4701 family


Domain annotation for each model (and alignments):
>> TIGR03758  conj_TIGR03758: integrating conjugative element protein, PFL_4701 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   1.4   1.8e-05     0.075      21      40 ..     114     133 ..     102     139 .. 0.85
   2 ?   -2.2   0.1      0.26   1.1e+03      62      74 ..     157     169 ..     147     171 .. 0.64

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 1.8e-05
    TIGR03758  21 tlilglvlavllLwaaWall 40 
                   +  g+v++v+l+w+ Wal 
  MMETSP1061-20121228|47781_1 114 LMHPGMVISVILIWGLWALH 133
                  45669*************96 PP

  == domain 2    score: -2.2 bits;  conditional E-value: 0.26
    TIGR03758  62 rlailllvllFfl 74 
                  r  +l++++ F+l
  MMETSP1061-20121228|47781_1 157 RSTALVILTGFVL 169
                  5556666666655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (257 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       159  (0.0387616); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.21
# Mc/sec: 1615.30
//
Query:       MMETSP1061-20121228|47783_1  [L=196]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.6e-23   79.7   0.0    7.4e-23   79.3   0.0    1.3  1  TIGR02349 DnaJ_bact: chaperone protein DnaJ
    2.1e-21   73.8   0.1    2.6e-21   73.5   0.1    1.0  1  TIGR03835 termin_org_DnaJ: terminal organelle assembly protein TopJ
    9.7e-08   30.1   1.0    1.4e-07   29.6   0.7    1.2  1  TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB


Domain annotation for each model (and alignments):
>> TIGR02349  DnaJ_bact: chaperone protein DnaJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.3   0.0   5.4e-26   7.4e-23       1      68 [.      59     126 ..      59     173 .. 0.92

  Alignments for each domain:
  == domain 1    score: 79.3 bits;  conditional E-value: 5.4e-26
    TIGR02349   1 dYYeiLgvskdAseeeikkAYrklakkyHPDrnkgekeaeekfkeineAyevLsdeekraqYD.qfgha 68 
                  dYY++Lg++++As++++k A+r+l+k++HPD+n  ++++ ++f+ in+Aye Lsd+ kr+qY+ q+ h+
  MMETSP1061-20121228|47783_1  59 DYYHVLGIDQNASRDDVKTAFRRLVKRFHPDANL-NTDTTQQFQTINKAYETLSDPTKRRQYNaQMYHS 126
                  9*********************************.9**************************8344454 PP

>> TIGR03835  termin_org_DnaJ: terminal organelle assembly protein TopJ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   73.5   0.1   1.9e-24   2.6e-21       2      91 ..      58     147 ..      57     155 .. 0.90

  Alignments for each domain:
  == domain 1    score: 73.5 bits;  conditional E-value: 1.9e-24
    TIGR03835   2 rDyyevLgidrDadeqeikkafrkLakkyhPDrnkaadaakifaeineandvLsnPkkraryDkyGhDGvDreddldfdadvfdsffeei 91 
                  +Dyy vLgid++a  +++k afr+L k++hPD n ++d  + f+ in a++ Ls+P kr +y+   +      d  +f  d f+  fe +
  MMETSP1061-20121228|47783_1  58 QDYYHVLGIDQNASRDDVKTAFRRLVKRFHPDANLNTDTTQQFQTINKAYETLSDPTKRRQYNAQMYHSGYSPDTPNFVIDAFEGGFEPV 147
                  7*************************************************************9766555556777888888898888865 PP

>> TIGR00714  hscB: Fe-S protein assembly co-chaperone HscB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.6   0.7     1e-10   1.4e-07       8      56 ..      75     119 ..      66     126 .. 0.85

  Alignments for each domain:
  == domain 1    score: 29.6 bits;  conditional E-value: 1e-10
    TIGR00714   8 LrkryrklQkqyHPDvsksaqeqaaalqqStelNqAykTLkdplkRaey 56 
                  ++  +r+l k++HPD ++   +     qq  ++N+Ay+TL dp kR +y
  MMETSP1061-20121228|47783_1  75 VKTAFRRLVKRFHPD-ANLNTD---TTQQFQTINKAYETLSDPTKRRQY 119
                  5678***********.555555...89999****************999 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (196 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.17u 0.17s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1034.79
//
Query:       MMETSP1061-20121228|47780_1  [L=801]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-12   45.0   0.0    2.2e-12   44.4   0.0    1.2  1  TIGR03204 pimC_large: pimeloyl-CoA dehydrogenase, large subunit
    1.6e-10   38.1   0.0    2.6e-10   37.4   0.0    1.3  1  TIGR03207 cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
    0.00035   17.4   0.0    0.00073   16.3   0.0    1.4  1  TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
     0.0024   14.8   0.0       0.19    8.6   0.0    2.1  2  TIGR03203 pimD_small: pimeloyl-CoA dehydrogenase, small subunit


Domain annotation for each model (and alignments):
>> TIGR03204  pimC_large: pimeloyl-CoA dehydrogenase, large subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.4   0.0   2.2e-15   2.2e-12      38     238 ..     127     342 ..      98     358 .. 0.77

  Alignments for each domain:
  == domain 1    score: 44.4 bits;  conditional E-value: 2.2e-15
    TIGR03204  38 tkeemvewyrilnkkgwgvshwpkqyggtgwts..vqdyifneelqaapapqplafgvsmv.gpviytfgneeqkkrflprianvddwwcqgfsepgsgsdlaslktk....aekkgdkyiing.qktwttlaqhadli.fclcrtdata..kkq..egisfilvdmkskgitvrpiq.tidggsevnevffddvevplenlvg.eenkgwdyakf 238
                   k+   e +  +  kg+   + pk++gg g+++  v   + +   q+  a + +a+  s+  g ++  +g+++qk+ flpr+a+     c g++ p sgsd +sl        e++g+  ++   +k + tla  a +i + l  +d+    k q  eg ++ l++    g+ +   +  ++ +     v  ddv +p+ n++g +e  g+ +  f
  MMETSP1061-20121228|47780_1 127 EKDFNKEVWDYMRDKGFFAMKIPKEWGGKGFSThaVSLILCKLSTQSFDANATVAVPNSLGpGELLARYGTDDQKEYFLPRLADGTLIPCFGLTGPHSGSDATSLIQSdcvvEERNGELGVVASfKKRYITLAPVAGVIgLGLNLSDPHGllKGQgaEGFTVALLERDHPGLNMGKRHmPLNAAFMNGTVEGDDVWIPMSNILGgQERCGFGWHMF 342
                  456667889999*******************86224455556678999********99985478999************************************9964322226999999888763789*********9956788888864224443367888889999999988654415677777778999*********986367777766666 PP

>> TIGR03207  cyc_hxne_CoA_dh: cyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.4   0.0   2.6e-13   2.6e-10      32     280 ..     129     393 ..     110     432 .. 0.78

  Alignments for each domain:
  == domain 1    score: 37.4 bits;  conditional E-value: 2.6e-13
    TIGR03207  32 vldrellrdmgelgflgpelseeygglgvgclaagvlleeiaradlsv.syvnllasln.gqilaqharpeiakewlakliageallaialteprggsdaarlr....lrierdgddyvlng.ektsisaadqadaavv...fa.rtgs.veegargisallvpmdlpgitrnrfdcigqraigrgsiffedvrvsadhllg.degkgfvqvm..qgfdfsral.iglqvlavaraaldetweyvaereafgkklsafqgvsfpl 280
                   +++e+   m + gf++ ++++e+gg+g  + a  ++l +++   ++  + v +  sl  g++la+++  +  + +l +l  g  + +  lt p++gsda++l     +  er+g+  v+   +k  i++a  a +  +   ++   g    +ga+g +  l+  d pg+   +     + a   g++  +dv ++ + +lg +e  gf   m  + +   r + +     +  r+ +    +y + r+ f  ++++f g+   l
  MMETSP1061-20121228|47780_1 129 DFNKEVWDYMRDKGFFAMKIPKEWGGKGFSTHAVSLILCKLSTQSFDAnATVAVPNSLGpGELLARYGTDDQKEYFLPRLADGTLIPCFGLTGPHSGSDATSLIqsdcVVEERNGELGVVASfKKRYITLAPVAGVIGLglnLSdPHGLlKGQGAEGFTVALLERDHPGLNMGKRHMPLNAAFMNGTVEGDDVWIPMSNILGgQERCGFGWHMfvECLAEGRGVsLPAGSAGCGRSVVSAIGAYTRVRKQFRVPIAEFGGIQEAL 393
                  567899999**********************************999862578999999559****************************************9952222456899*988776626778999988877543111221234324689********************99999*****************999997256667765541144555554323445667778888888888888888888888888886543 PP

>> TIGR04022  sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.3   0.0   7.1e-07   0.00073      40     215 ..     136     329 ..     123     336 .. 0.69

  Alignments for each domain:
  == domain 1    score: 16.3 bits;  conditional E-value: 7.1e-07
    TIGR04022  40 dafsqsGLwgitvPrayGGaevsaatlaeviaiisa..aDpslgqipqnhfallevlrlegseeqkrfffeevlaGe...Rfgnalseagtknvkelktrle..rd..gdglrldGrkfystGalfahwipvla..ld........eegrevlafvprdapGltviddWsgfGqrttasGtvlldevrveaeevv 215
                  d + + G +++++P+++GG + s+++++ ++  +s+   D++ +    n +   e l   g+++qk++f  ++ +G+    fg + + +g+ +++ ++   +  ++  + g++ + +k y t a  a +i +     d         ++  ++a+++rd+pGl++      +   +   Gtv+ d+v+++ ++++
  MMETSP1061-20121228|47780_1 136 DYMRDKGFFAMKIPKEWGGKGFSTHAVSLILCKLSTqsFDANATVAVPNSLGPGELLARYGTDDQKEYFLPRLADGTlipCFGLTGPHSGSDATSLIQSDCVveERngELGVVASFKKRYITLAPVAGVIGLGLnlSDphgllkgqGAEGFTVALLERDHPGLNMGKRHMPLN-AAFMNGTVEGDDVWIPMSNIL 329
                  667789************************999986225888888889****************************8333478888888877776666543300221033477788899999888888886532112211111110222334777788888877766666654.344567777777776666665 PP

>> TIGR03203  pimD_small: pimeloyl-CoA dehydrogenase, small subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    8.6   0.0   0.00018      0.19       6     118 ..     103     213 ..      99     228 .. 0.70
   2 !    3.9   0.0    0.0049       5.1     236     280 ..     347     391 ..     336     418 .. 0.80

  Alignments for each domain:
  == domain 1    score: 8.6 bits;  conditional E-value: 0.00018
    TIGR03203   6 eeqrllkesvegllkdsydfdsrkkyakekggwskavwgklaeqgllglpfseadggfgagavet.mivmealgkalvlepylat..vvigggflrragsaaqkaaylpgiidgsk 118
                  eeq +l + v+ l     d d       e   + k vw  + ++g++ + + ++ gg g  +    +i+ +   +++  +  +a    +  g +l r g+++qk  +lp + dg+ 
  MMETSP1061-20121228|47780_1 103 EEQSFLDNEVNTLCGLLNDHDIS----ME-KDFNKEVWDYMRDKGFFAMKIPKEWGGKGFSTHAVsLILCKLSTQSFDANATVAVpnSLGPGELLARYGTDDQKEYFLPRLADGTL 213
                  66777777776664444443322....22.246778***************99999877665554044455555666666655541134457799******************975 PP

  == domain 2    score: 3.9 bits;  conditional E-value: 0.0049
    TIGR03203 236 vddarvalcaeavglmdeslkttveyiktrkqfgvaigsfqvlqh 280
                   +   v+l a + g     + +   y + rkqf v+i  f  +q 
  MMETSP1061-20121228|47780_1 347 AEGRGVSLPAGSAGCGRSVVSAIGAYTRVRKQFRVPIAEFGGIQE 391
                  5555567777777877777777889***************98886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (801 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       121  (0.0294978); expected 82.0 (0.02)
Passed bias filter:                      114  (0.0277913); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.41u 0.16s 00:00:00.56 Elapsed: 00:00:00.32
# Mc/sec: 3303.85
//
Query:       MMETSP1061-20121228|47782_1  [L=234]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (234 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1403.88
//
Query:       MMETSP1061-20121228|47789_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       302  (0.0736226); expected 82.0 (0.02)
Passed bias filter:                      197  (0.0480254); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.17s 00:00:00.37 Elapsed: 00:00:00.27
# Mc/sec: 1295.45
//
Query:       MMETSP1061-20121228|47784_1  [L=453]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0026   15.7   1.7     0.0038   15.1   0.2    2.0  2  TIGR03988 antisig_RsrA: mycothiol system anti-sigma-R factor
  ------ inclusion threshold ------
      0.077   11.0   3.3      0.056   11.4   0.4    2.1  2  TIGR02949 anti_SigH_actin: anti-sigma factor, TIGR02949 family


Domain annotation for each model (and alignments):
>> TIGR03988  antisig_RsrA: mycothiol system anti-sigma-R factor
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.8   0.1      0.37   7.6e+02      38      55 ..     180     197 ..     167     213 .. 0.69
   2 !   15.1   0.2   1.9e-06    0.0038      24      51 ..     337     364 ..     305     369 .. 0.82

  Alignments for each domain:
  == domain 1    score: -1.8 bits;  conditional E-value: 0.37
    TIGR03988  38 eygleeevkslvkrkCgg 55 
                  + + +e ++s+ + kC++
  MMETSP1061-20121228|47784_1 180 SCDTDEVIRSIDELKCKE 197
                  456677777777777763 PP

  == domain 2    score: 15.1 bits;  conditional E-value: 1.9e-06
    TIGR03988  24 rlraHldeCseCleeygleeevkslvkr 51 
                   l + ldeC+ C++e++ ++ + +lvkr
  MMETSP1061-20121228|47784_1 337 LLSRELDECARCVKELDTDHYMHELVKR 364
                  47789*********************98 PP

>> TIGR02949  anti_SigH_actin: anti-sigma factor, TIGR02949 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.6   0.1       0.3   6.2e+02      45      60 ..     180     195 ..     167     207 .. 0.56
   2 ?   11.4   0.4   2.7e-05     0.056      32      59 ..     338     365 ..     322     371 .. 0.80

  Alignments for each domain:
  == domain 1    score: -1.6 bits;  conditional E-value: 0.3
    TIGR02949  45 eydlEqavrkllkrcc 60 
                    d ++++r++   +c
  MMETSP1061-20121228|47784_1 180 SCDTDEVIRSIDELKC 195
                  3344444444444444 PP

  == domain 2    score: 11.4 bits;  conditional E-value: 2.7e-05
    TIGR02949  32 lrrHleaCpeCleeydlEqavrkllkrc 59 
                  l r l++C  C++e+d ++ +++l+kr 
  MMETSP1061-20121228|47784_1 338 LSRELDECARCVKELDTDHYMHELVKRG 365
                  6789**********************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (453 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.23
# Mc/sec: 2599.61
//
Query:       MMETSP1061-20121228|47793_1  [L=98]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (98 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 615.95
//
Query:       MMETSP1061-20121228|47802_1  [L=233]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (233 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1537.67
//
Query:       MMETSP1061-20121228|47812_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 361.23
//
Query:       MMETSP1061-20121228|47823_1  [L=76]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (76 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 417.97
//
Query:       MMETSP1061-20121228|47824_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.28u 0.14s 00:00:00.42 Elapsed: 00:00:00.28
# Mc/sec: 2729.35
//
Query:       MMETSP1061-20121228|47846_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.2    5.2   9.3        4.5    5.1   6.4    1.0  1  TIGR02205 septum_zipA: cell division protein ZipA


Domain annotation for each model (and alignments):
>> TIGR02205  septum_zipA: cell division protein ZipA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    5.1   6.4    0.0011       4.5      42     122 ..      11      92 ..       2      93 .] 0.80

  Alignments for each domain:
  == domain 1    score: 5.1 bits;  conditional E-value: 0.0011
    TIGR02205  42 klksdddsseelveddeveevrverv.eheipqpseqkepsiseavdkerkksvedeeasvpaqpvqqqldlpqaekvaqqt 122
                  ++  +++++++  +++  e + v+     +++ p +++    s+++ ++++++++ + ++ +  p+ + l+lp  ++v  q+
  MMETSP1061-20121228|47846_1  11 NISYEQHQQQQQRQEQSYEATTVHTNyLSQESDPIPERRIDGSDREQQQHQQHQQIQYTQTGIAPTTETLHLPPLQQVHTQQ 92 
                  6677889999999999999999997766777778888888888888888888888888888888******999988887765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      138  (0.0336421); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 533.70
//
Query:       MMETSP1061-20121228|47847_1  [L=469]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.7e-51  171.6   0.1    1.2e-50  171.2   0.0    1.0  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases
    4.1e-29   98.8   0.1    1.2e-28   97.3   0.1    1.8  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
    6.9e-17   59.3   0.1    1.8e-16   58.0   0.0    1.7  1  TIGR01068 thioredoxin: thioredoxin
    0.00025   17.6   0.1    0.00042   16.8   0.0    1.3  1  TIGR00424 APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
  ------ inclusion threshold ------
      0.012   13.2   0.0      0.043   11.4   0.0    1.9  2  TIGR02187 GlrX_arch: glutaredoxin-like domain protein
      0.017   12.7   0.1      0.095   10.2   0.0    2.1  2  TIGR02738 TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB


Domain annotation for each model (and alignments):
>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.2   0.0   1.8e-53   1.2e-50       4     330 ..      59     386 ..      56     393 .. 0.79

  Alignments for each domain:
  == domain 1    score: 171.2 bits;  conditional E-value: 1.8e-53
    TIGR01130   4 leltkenfddlik..enelvLveFYAPWCGHCksLaPeYekAAeelkkkspkvklakvDateekelaqkygvsGyPtLkifrngesssdYnGpReaegivkylkkqsgPaskeletvedlekllekkevvvvgvfkd..ldselvetflevaeklrdkfkavasssdeaalkkleakkdevvlvkkkkeeekeekveeeletdvealekfvkkeslplvgeftketaakifesk..plkvlllnveeskkk..seellekflevakkfkgkkvkfavadeeefgkeleelglkaekapavvilslee...skkyaleqeefssealkefvkdfldgkl 330
                  ++l +e+f+ +i+  en++   +FYAPWCGHCk++aP  e+AAe+lk k    +++k+D+t++k++++k++v+G+PtLk+  +ge + dY+G+Re+  i+++ +k s+Pa+ e++ +e+++ +++kk+   +++  +  + s+l++ f++va+k++ ++ ++  ++ e+ +++ + + + v  +++  +e+k+  +  e+ t ++ ++++vk +++p ++ +t +++ +i +++  +l  ++  ++++  +  +++++e +l++  ++ +k +   + d ++ +k l+++g+++e+ p+ +il+  +   +k y  ++  +   +l++f++++ +g++
  MMETSP1061-20121228|47847_1  59 VQLDNESFQAAIEdpENPMWFLKFYAPWCGHCKKMAPMLESAAEKLKGKM---AIGKIDCTQHKDVCNKHKVKGFPTLKYSIDGE-VMDYSGGREELDIINFAQKMSEPAVLEIRRLEEAKMFAQKKASDGIVFLGSgkEGSKLSKLFQTVARKMQANAYFLWLEQLESPTDNGRDN-SYVDKIETGIVEPKRWEATVEEMT-ESVFAAWVKDQNVPTISILTPKNFPRISRNGrqLLMAIVDMDNQELVEgiKSHIMEFILRAPDQYVEKRY-YGLFDGKKWHKFLQQFGVRQEDNPQYLILNPLDfsgEKTYWRNE-TY--TKLNDFLQAVEEGDI 386
                  68999*******944588999*************************9988...9******************************7.8*************************************99666555554432367899************999988887777777776554.455566666665555555444444.579**********************999988533334444444444444555666666666666766544.67777789******************998754322266676654.33..4799***99999986 PP

>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.3   0.1   1.8e-31   1.2e-28       3     103 ..      63     159 ..      61     161 .. 0.92
   2 ?   -2.6   0.0       2.2   1.5e+03      64      92 ..     260     288 ..     248     300 .. 0.60

  Alignments for each domain:
  == domain 1    score: 97.3 bits;  conditional E-value: 1.8e-31
    TIGR01126   3 aenfdelvld.enkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdataekelaskfkvsgfPtlkffkkgkkepvdyeGeReaeelvefvee 103
                  +e+f+ ++ d en +++++fyaPWCGhCkk+aP  e++a++lk    k+ i+k+d+t++k++++k kv+gfPtlk+  +g+   +dy+G+Re+ ++++f ++
  MMETSP1061-20121228|47847_1  63 NESFQAAIEDpENPMWFLKFYAPWCGHCKKMAPMLESAAEKLKG---KMAIGKIDCTQHKDVCNKHKVKGFPTLKYSIDGE--VMDYSGGREELDIINFAQK 159
                  67899999983456789**************************8...579*****************************99..7***************987 PP

  == domain 2    score: -2.6 bits;  conditional E-value: 2.2
    TIGR01126  64 askfkvsgfPtlkffkkgkkepvdyeGeR 92 
                  a+ +k +  Pt+ +++ ++  +++ +G  
  MMETSP1061-20121228|47847_1 260 AAWVKDQNVPTISILTPKNFPRISRNGRQ 288
                  44455567788888877765555555554 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   58.0   0.0   2.6e-19   1.8e-16       3      88 ..      63     149 ..      61     161 .. 0.85

  Alignments for each domain:
  == domain 1    score: 58.0 bits;  conditional E-value: 2.6e-19
    TIGR01068   3 eenfeetvassdklv.lvDfwAeWCgpCkmlaPvleelakeleekvkvvKlnvdeeqeiaakygirsiPtlllfkngkevkrvvGak 88 
                  +e+f+ ++++ ++++  + f+A+WCg Ck +aP+le +a++l++k+++ K++  +++++ +k +++  Ptl    +g++++ + G +
  MMETSP1061-20121228|47847_1  63 NESFQAAIEDPENPMwFLKFYAPWCGHCKKMAPMLESAAEKLKGKMAIGKIDCTQHKDVCNKHKVKGFPTLKYSIDGEVMDYSGGRE 149
                  5677777777655442789****************************************************9999999998877755 PP

>> TIGR00424  APS_reduc: 5'-adenylylsulfate reductase, thioredoxin-independent
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   6.2e-07   0.00042     374     433 ..      77     133 ..      68     144 .. 0.81

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 6.2e-07
    TIGR00424 374 awlvvlyapwcpfcqameasyvelaeklagsgvkvakfradgdqkefakqelqlgsfpti 433
                   w++ +yapwc  c+ m       aekl g+   +a  + d  q++   ++ +++ fpt+
  MMETSP1061-20121228|47847_1  77 MWFLKFYAPWCGHCKKMAPMLESAAEKLKGK---MAIGKIDCTQHKDVCNKHKVKGFPTL 133
                  699*************************996...45555677776666666677777775 PP

>> TIGR02187  GlrX_arch: glutaredoxin-like domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.3e-05     0.043      13      87 ..      66     139 ..      55     160 .. 0.70
   2 ?   -1.9   0.0      0.75   5.1e+02      56     110 ..     291     340 ..     280     350 .. 0.62

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.3e-05
    TIGR02187  13 flkelknpvelvvFtdeskekCeyCeetkqlleelsevsdklkleiydldteedkekvekykvervPtvileeeg 87 
                  f++ + +p + + F++     C  C+++  +le  +e   k k+ i + d  ++k++ +k+kv   Pt+  + +g
  MMETSP1061-20121228|47847_1  66 FQAAIEDPENPMWFLKFYAPWCGHCKKMAPMLESAAEK-LKGKMAIGKIDCTQHKDVCNKHKVKGFPTLKYSIDG 139
                  55555555555556665555566666666665554432.344678889999999999999999999998877666 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 0.75
    TIGR02187  56 leiydldteedkekvekykvervPtvileeegskdieirytGiPaGeEfaalied 110
                  + i+d+d++e  e ++ + +e     il+   ++ +e ry+G+  G+    ++++
  MMETSP1061-20121228|47847_1 291 MAIVDMDNQELVEGIKSHIME----FILRA-PDQYVEKRYYGLFDGKKWHKFLQQ 340
                  556666643333333333322....34444.446778899999999988888776 PP

>> TIGR02738  TrbB: type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   0.00014     0.095      55      80 ..      80     105 ..      60     120 .. 0.85
   2 ?   -0.7   0.0      0.33   2.2e+02      79      93 ..     128     142 ..     114     144 .. 0.82

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 0.00014
    TIGR02738  55 vlfyqstCpyChqfapvLkqlsqqtg 80 
                  + fy   C +C++ ap+L + +++ +
  MMETSP1061-20121228|47847_1  80 LKFYAPWCGHCKKMAPMLESAAEKLK 105
                  559999************99998876 PP

  == domain 2    score: -0.7 bits;  conditional E-value: 0.33
    TIGR02738  79 tglevlayslDgkgl 93 
                   g+++l ys+Dg+ +
  MMETSP1061-20121228|47847_1 128 KGFPTLKYSIDGEVM 142
                  5899********977 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (469 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                      116  (0.0282789); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.29u 0.14s 00:00:00.43 Elapsed: 00:00:00.27
# Mc/sec: 2292.70
//
Query:       MMETSP1061-20121228|47862_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 508.16
//
Query:       MMETSP1061-20121228|47858_1  [L=291]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0065   14.4   0.2     0.0095   13.9   0.1    1.3  1  TIGR00199 cinA_cterm: competence/damage-inducible protein CinA C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR00199  cinA_cterm: competence/damage-inducible protein CinA C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.9   0.1   2.3e-06    0.0095      12      43 ..     209     240 ..     196     270 .. 0.74

  Alignments for each domain:
  == domain 1    score: 13.9 bits;  conditional E-value: 2.3e-06
    TIGR00199  12 vatAESctGGllaealtdisgaskyfegGvva 43 
                  +  AE + GGl  ++lt   gas+++++G  a
  MMETSP1061-20121228|47858_1 209 LLGAEQIVGGLAIKVLTTSTGASAVYQAGQAA 240
                  3469************************9766 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (291 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       119  (0.0290102); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1669.95
//
Query:       MMETSP1061-20121228|47864_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|47870_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.22u 0.16s 00:00:00.38 Elapsed: 00:00:00.33
# Mc/sec: 1627.87
//
Query:       MMETSP1061-20121228|47882_1  [L=175]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (175 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        74  (0.01804); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 962.42
//
Query:       MMETSP1061-20121228|47890_1  [L=87]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (87 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       36  (0.00877621); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 546.81
//
Query:       MMETSP1061-20121228|47895_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        71  (0.0173086); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 317.75
//
Query:       MMETSP1061-20121228|47909_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.30
# Mc/sec: 272.78
//
Query:       MMETSP1061-20121228|47905_1  [L=670]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      0.001   16.8   0.0     0.0024   15.6   0.0    1.6  1  TIGR00288 TIGR00288: TIGR00288 family protein


Domain annotation for each model (and alignments):
>> TIGR00288  TIGR00288: TIGR00288 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   5.8e-07    0.0024      32      99 ..     224     293 ..     220     322 .. 0.84

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 5.8e-07
    TIGR00288  32 pnmlrkefnidldkvreilseyGd.lkvgkvllnqyasdklieavvnqGfepiv.vagdvdvelaveale 99 
                  p +lrkef+ +  ++ e l++  d + +   +l q+  + li+     G+ep+v v  dv++ +a+ea  
  MMETSP1061-20121228|47905_1 224 PAILRKEFTTNKYQITEALAKGADtILLIVAVLPQHLLKELIDHARSFGMEPLVeVHADVELDVALEAGA 293
                  899****************998872445556899*******************95568999999999854 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (670 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       198  (0.0482691); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.36u 0.15s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 2679.78
//
Query:       MMETSP1061-20121228|47921_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       18  (0.0043881); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|47933_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 326.83
//
Query:       MMETSP1061-20121228|47940_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        52  (0.0126767); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1361.89
//
Query:       MMETSP1061-20121228|47938_1  [L=752]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (752 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       327  (0.0797172); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.35u 0.15s 00:00:00.50 Elapsed: 00:00:00.33
# Mc/sec: 3007.75
//
Query:       MMETSP1061-20121228|47953_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 414.82
//
Query:       MMETSP1061-20121228|47968_1  [L=30]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (30 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.07u 0.14s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 208.40
//
Query:       MMETSP1061-20121228|47973_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       30  (0.00731351); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.19
# Mc/sec: 354.29
//
Query:       MMETSP1061-20121228|47981_1  [L=136]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (136 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 854.79
//
Query:       MMETSP1061-20121228|48009_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       24  (0.0058508); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 408.54
//
Query:       MMETSP1061-20121228|48010_1  [L=74]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (74 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.23
# Mc/sec: 424.66
//
Query:       MMETSP1061-20121228|48020_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       187  (0.0455875); expected 82.0 (0.02)
Passed bias filter:                      150  (0.0365675); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 511.46
//
Query:       MMETSP1061-20121228|48035_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       69  (0.0168211); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 467.96
//
Query:       MMETSP1061-20121228|48033_1  [L=267]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (267 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.26
# Mc/sec: 1355.43
//
Query:       MMETSP1061-20121228|48040_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   15.7   0.0     0.0085   14.1   0.0    1.9  1  TIGR00756 PPR: pentatricopeptide repeat domain


Domain annotation for each model (and alignments):
>> TIGR00756  PPR: pentatricopeptide repeat domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.0   2.1e-06    0.0085       2      30 ..      12      40 ..      11      44 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 2.1e-06
    TIGR00756  2 tyntlisglckagrveeAlelfdeMkerg 30
                 +ynt++   +k g+   ++ ++++++e+ 
  MMETSP1061-20121228|48040_1 12 SYNTVMGIAGKVGNATLVETVWQDLMEKR 40
                 8*********************8887764 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 487.79
//
Query:       MMETSP1061-20121228|48042_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                         6  (0.0014627); expected 82.0 (0.02)
Passed bias filter:                        6  (0.0014627); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|48043_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 516.48
//
Query:       MMETSP1061-20121228|48045_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 421.35
//
Query:       MMETSP1061-20121228|48046_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        26  (0.00633837); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 349.77
//
Query:       MMETSP1061-20121228|48038_1  [L=377]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (377 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.28
# Mc/sec: 1715.86
//
Query:       MMETSP1061-20121228|48055_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.17s 00:00:00.26 Elapsed: 00:00:00.28
# Mc/sec: 382.31
//
Query:       MMETSP1061-20121228|48063_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        37  (0.00901999); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 444.59
//
Query:       MMETSP1061-20121228|48094_1  [L=493]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (493 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       118  (0.0287665); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.14s 00:00:00.40 Elapsed: 00:00:00.30
# Mc/sec: 2169.02
//
Query:       MMETSP1061-20121228|48106_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0024   14.4   0.0     0.0024   14.4   0.0    1.1  1  TIGR01810 betA: choline dehydrogenase
     0.0026   15.3   0.1     0.0026   15.3   0.0    1.1  1  TIGR02032 GG-red-SF: geranylgeranyl reductase family
     0.0033   14.3   0.0     0.0033   14.3   0.0    1.1  1  TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase
  ------ inclusion threshold ------
      0.014   12.1   0.0      0.015   12.1   0.0    1.1  1  TIGR03970 Rv0697: dehydrogenase, Rv0697 family
      0.043   10.7   0.1      0.045   10.7   0.1    1.1  1  TIGR01789 lycopene_cycl: lycopene cyclase


Domain annotation for each model (and alignments):
>> TIGR01810  betA: choline dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.4   0.0   2.9e-06    0.0024       1      35 [.      13      48 ..      13      73 .. 0.88

  Alignments for each domain:
  == domain 1    score: 14.4 bits;  conditional E-value: 2.9e-06
    TIGR01810  1 dyiiiGaGsaGsvlatrlsedvs.nsvlvleaGgsd 35
                 d+i++G G aG+++++rl+e  + +++l +e+Gg+ 
  MMETSP1061-20121228|48106_1 13 DFIVVGLGYAGAIMTARLAERNKdAKILAIEYGGPM 48
                 9*******************7761578899***985 PP

>> TIGR02032  GG-red-SF: geranylgeranyl reductase family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.3   0.0   3.2e-06    0.0026       1      26 [.      12      37 ..      12      85 .. 0.79

  Alignments for each domain:
  == domain 1    score: 15.3 bits;  conditional E-value: 3.2e-06
    TIGR02032  1 yDvvvvGaGpaGssaAlrlakkGlrV 26
                 yD++vvG G aG+++ +rla+   + 
  MMETSP1061-20121228|48106_1 12 YDFIVVGLGYAGAIMTARLAERNKDA 37
                 9*************999999765443 PP

>> TIGR00031  UDP-GALP_mutase: UDP-galactopyranose mutase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.0     4e-06    0.0033       2      31 ..      12      43 ..      11      82 .. 0.81

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 4e-06
    TIGR00031  2 fdyiivGaGlsGivlaeilaklnk..rvlvve 31
                 +d+i+vG G +G++++  la+ nk  ++l +e
  MMETSP1061-20121228|48106_1 12 YDFIVVGLGYAGAIMTARLAERNKdaKILAIE 43
                 9****************999998844667776 PP

>> TIGR03970  Rv0697: dehydrogenase, Rv0697 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.1   0.0   1.8e-05     0.015       2      35 ..      13      47 ..      12      68 .. 0.81

  Alignments for each domain:
  == domain 1    score: 12.1 bits;  conditional E-value: 1.8e-05
    TIGR03970  2 DvlvvGaGsaGsvlaarLse.dpsatvtvleaGpg 35
                 D++vvG G aG+++ arL+e ++ a+++ +e G  
  MMETSP1061-20121228|48106_1 13 DFIVVGLGYAGAIMTARLAErNKDAKILAIEYGGP 47
                 99****************98356678888887754 PP

>> TIGR01789  lycopene_cycl: lycopene cyclase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.7   0.1   5.5e-05     0.045       1      33 [.      13      45 ..      13      65 .. 0.92

  Alignments for each domain:
  == domain 1    score: 10.7 bits;  conditional E-value: 5.5e-05
    TIGR01789  1 dvivvGgGlagglialrlqdarPdlrilvieaa 33
                 d ivvG G ag++++ rl + + d +il ie +
  MMETSP1061-20121228|48106_1 13 DFIVVGLGYAGAIMTARLAERNKDAKILAIEYG 45
                 89****************************965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       147  (0.0358362); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                        32  (0.00780107); expected 4.1 (0.001)
Passed Fwd filter:                         5  (0.00121892); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               5  [number of targets reported over threshold]
# CPU time: 0.12u 0.17s 00:00:00.29 Elapsed: 00:00:00.25
# Mc/sec: 475.16
//
Query:       MMETSP1061-20121228|48110_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|48115_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.26
# Mc/sec: 482.27
//
Query:       MMETSP1061-20121228|48122_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 775.44
//
Query:       MMETSP1061-20121228|48134_1  [L=277]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (277 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.28
# Mc/sec: 1260.72
//
Query:       MMETSP1061-20121228|48157_1  [L=146]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (146 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       34  (0.00828864); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.27
# Mc/sec: 713.72
//
Query:       MMETSP1061-20121228|48158_1  [L=260]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (260 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.22
# Mc/sec: 1559.87
//
Query:       MMETSP1061-20121228|48193_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 461.96
//
Query:       MMETSP1061-20121228|48191_1  [L=206]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-21   72.1   0.0    2.2e-12   44.9   0.0    2.3  2  TIGR03684 arCOG00985: arCOG04150 universal archaeal PUA-domain protein
    9.6e-21   71.9   0.0    2.5e-20   70.6   0.0    1.6  2  TIGR00451 unchar_dom_2: uncharacterized domain 2
     0.0016   15.5   0.0      0.021   11.8   0.0    2.0  2  TIGR00425 CBF5: putative rRNA pseudouridine synthase


Domain annotation for each model (and alignments):
>> TIGR03684  arCOG00985: arCOG04150 universal archaeal PUA-domain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.9   0.0   1.6e-15   2.2e-12      46     103 ..      75     134 ..      64     139 .. 0.88
   2 !   24.9   0.1   2.3e-09   3.2e-06     103     152 ..     152     201 ..     148     203 .. 0.94

  Alignments for each domain:
  == domain 1    score: 44.9 bits;  conditional E-value: 1.6e-15
    TIGR03684  46 dgkpllfev.deeliptlklllelklek.kvvvVDeGAvkfiinGAdvmapGivevdeei 103
                  +++p++f+  d+ ++ptl+ ++++   +   v+VD+GA++fi+ GA++m+pG ++  ++i
  MMETSP1061-20121228|48191_1  75 SDEPVFFQHrDGPILPTLRTIHKYPTLEfTSVTVDKGAIPFILGGANIMCPGLTKPGQSI 134
                  57999999879999**********98877***********************98866665 PP

  == domain 2    score: 24.9 bits;  conditional E-value: 2.3e-09
    TIGR03684 103 ikegdivvvveekhrkplavgvalmdaeeiveekkGkavknlhhvgDkiw 152
                  +++gd vv+  e +++ +a+gv  m++ +i +++kG  +   h +gD ++
  MMETSP1061-20121228|48191_1 152 LSKGDGVVIRAEGKENAIAIGVMKMSSVDIRAKNKGIGIDLAHSLGDGLF 201
                  789********************************************886 PP

>> TIGR00451  unchar_dom_2: uncharacterized domain 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.0       1.7   2.3e+03      52      65 ..      26      39 ..      17      44 .. 0.72
   2 !   70.6   0.0   1.8e-23   2.5e-20       5     107 .]      76     198 ..      74     198 .. 0.95

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1.7
    TIGR00451 52 PGiveadedikekd 65
                   i ea+++i+e++
  MMETSP1061-20121228|48191_1 26 ASIAEANPKISEEE 39
                 56788888888776 PP

  == domain 2    score: 70.6 bits;  conditional E-value: 1.8e-23
    TIGR00451   5 gevlllkkfd.kvilslkgakklkee.kklvkvdegavkFllngadvlkPGiveadedik..................ekdvvvvvdenkdralavGialvsgeeikevekGkavkvihhikD 107
                  +e++++++ d  + ++l+ ++k +    + v+vd+ga+ F+l ga++++PG+++ ++ i                   ++d vv+ +e k++a+a+G+  +s+ +i+  +kG  +++ h ++D
  MMETSP1061-20121228|48191_1  76 DEPVFFQHRDgPILPTLRTIHKYPTLeFTSVTVDKGAIPFILGGANIMCPGLTKPGQSIMppdgeeqdeqgfdkpglsKGDGVVIRAEGKENAIAIGVMKMSSVDIRAKNKGIGIDLAHSLGD 198
                  68999987665899********98753899*****************************99**********************************************************9998 PP

>> TIGR00425  CBF5: putative rRNA pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   0.0      0.02        27     235     268 ..     101     134 ..      77     140 .. 0.79
   2 !   11.8   0.0   1.5e-05     0.021     267     309 ..     151     194 ..     145     199 .. 0.85

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.02
    TIGR00425 235 aelkrvvvkdsavdaicyGadlavrGlakledgi 268
                   e+  v v   a+  i  Ga+++ +Gl k  ++i
  MMETSP1061-20121228|48191_1 101 LEFTSVTVDKGAIPFILGGANIMCPGLTKPGQSI 134
                  56778889999999*************9876665 PP

  == domain 2    score: 11.8 bits;  conditional E-value: 1.5e-05
    TIGR00425 267 giekedtvvvit.lkgeavavgkalmstkdiaaadkGvvvdvkr 309
                  g++k+d vv+ +  k++a+a+g  +ms++di a +kG+ +d+ +
  MMETSP1061-20121228|48191_1 151 GLSKGDGVVIRAeGKENAIAIGVMKMSSVDIRAKNKGIGIDLAH 194
                  67788999987625899*********************999765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (206 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.25
# Mc/sec: 1087.59
//
Query:       MMETSP1061-20121228|48212_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 377.11
//
Query:       MMETSP1061-20121228|48219_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 533.96
//
Query:       MMETSP1061-20121228|48209_1  [L=305]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (305 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       216  (0.0526572); expected 82.0 (0.02)
Passed bias filter:                      132  (0.0321794); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.25
# Mc/sec: 1610.27
//
Query:       MMETSP1061-20121228|48225_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.20
# Mc/sec: 1240.70
//
Query:       MMETSP1061-20121228|48237_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|48238_1  [L=83]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (83 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.25
# Mc/sec: 438.20
//
Query:       MMETSP1061-20121228|48258_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 473.96
//
Query:       MMETSP1061-20121228|48244_1  [L=1095]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.066    9.8   0.0        0.1    9.2   0.0    1.1  1  TIGR01648 hnRNP-R-Q: hnRNP-R, Q splicing factor family


Domain annotation for each model (and alignments):
>> TIGR01648  hnRNP-R-Q: hnRNP-R, Q splicing factor family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.2   0.0   2.5e-05       0.1     256     296 ..     532     573 ..     515     580 .. 0.78

  Alignments for each domain:
  == domain 1    score: 9.2 bits;  conditional E-value: 2.5e-05
    TIGR01648 256 efkpGavervkkirdyafvhfedredavkamdel.nGkeleG 296
                   +  G + r+ k   ya v f++r++a+ a + l +G  l+G
  MMETSP1061-20121228|48244_1 532 VIPSGVLSRIVKSESYAVVTFTSRQAAIAARQCLsDGSGLDG 573
                  355699************************998844777777 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1095 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       160  (0.0390054); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.49u 0.14s 00:00:00.63 Elapsed: 00:00:00.40
# Mc/sec: 3613.20
//
Query:       MMETSP1061-20121228|48262_1  [L=95]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.3e-11   41.5   0.1    2.5e-11   41.4   0.0    1.0  1  TIGR03467 HpnE: squalene-associated FAD-dependent desaturase
      1e-08   32.0   0.1    1.2e-08   31.8   0.1    1.0  1  TIGR00562 proto_IX_ox: protoporphyrinogen oxidase
    1.3e-07   28.6   0.1    1.3e-07   28.5   0.1    1.0  1  TIGR02734 crtI_fam: phytoene desaturase
    1.9e-05   21.4   0.1    2.2e-05   21.2   0.1    1.0  1  TIGR02731 phytoene_desat: phytoene desaturase
      2e-05   21.5   0.1    2.3e-05   21.3   0.1    1.0  1  TIGR02732 zeta_caro_desat: carotene 7,8-desaturase
    0.00013   18.8   1.8    0.00016   18.4   1.3    1.1  1  TIGR00275 TIGR00275: flavoprotein, HI0933 family
    0.00039   16.7   0.1    0.00039   16.7   0.1    1.0  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0036   14.4   0.2     0.0039   14.3   0.1    1.1  1  TIGR00292 TIGR00292: thiazole biosynthesis enzyme
     0.0058   12.2   0.4     0.0073   11.9   0.3    1.2  1  TIGR01372 soxA: sarcosine oxidase, alpha subunit family
     0.0062   13.1   0.2     0.0062   13.1   0.1    1.1  1  TIGR02733 desat_CrtD: C-3',4' desaturase CrtD
  ------ inclusion threshold ------
      0.014   12.0   1.1      0.016   11.8   0.8    1.1  1  TIGR01813 flavo_cyto_c: flavocytochrome c
      0.015   11.9   0.6      0.017   11.7   0.4    1.2  1  TIGR02485 CobZ_N-term: precorrin 3B synthase CobZ


Domain annotation for each model (and alignments):
>> TIGR03467  HpnE: squalene-associated FAD-dependent desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.4   0.0   7.3e-14   2.5e-11       3      71 ..       2      76 ..       1      86 [. 0.92

  Alignments for each domain:
  == domain 1    score: 41.4 bits;  conditional E-value: 7.3e-14
    TIGR03467  3 vvGgGlAGLaAAveLaraG.......vrvtllEarrqlGGRarsfedgslgetiDngqHvllgaytellallarvg 71
                 v+GgG++GL+AA++ a+a        +++ llEa  ++GGR+ s++ ++   ++D g  v +  y ++ +ll+  g
  MMETSP1061-20121228|48262_1  2 VIGGGVSGLTAAITAAEAAagetkkkMKIVLLEANTNCGGRVNSVTTDDGF-VLDEGFAVFIEEYPAVKKLLDYDG 76
                 9**************99877899999*******************999888.9*************9999998665 PP

>> TIGR00562  proto_IX_ox: protoporphyrinogen oxidase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   3.4e-11   1.2e-08       7      77 ..       2      78 ..       1      85 [. 0.84

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 3.4e-11
    TIGR00562  7 vvGgGisGLciayalekerp.....dvelvlvEakdRvGGkiyTr.kesGyllEkGprtlleskegildllkdlGle 77
                 v+GgG+sGL++a + +         ++ +vl+Ea+   GG++  +   +G++l++G   + e+ +++ +ll   Gle
  MMETSP1061-20121228|48262_1  2 VIGGGVSGLTAAITAAEAAAgetkkKMKIVLLEANTNCGGRVNSVtTDDGFVLDEGFAVFIEEYPAVKKLLDYDGLE 78
                 9********99988766544445569*****************6515689***************999999888887 PP

>> TIGR02734  crtI_fam: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.5   0.1   3.7e-10   1.3e-07       3      55 ..       2      62 ..       1      83 [. 0.79

  Alignments for each domain:
  == domain 1    score: 28.5 bits;  conditional E-value: 3.7e-10
    TIGR02734  3 ViGaGlgGLAlAirLa..aaG.....ievtvlekrdkpGGRagvl.eedGfrfDtGPtvit 55
                 ViG+G++GL +Ai  a  aaG     +++ +le++++ GGR  ++ ++dGf +D G +v++
  MMETSP1061-20121228|48262_1  2 VIGGGVSGLTAAITAAeaAAGetkkkMKIVLLEANTNCGGRVNSVtTDDGFVLDEGFAVFI 62
                 9**********9987622455444446899***********97761567*******88876 PP

>> TIGR02731  phytoene_desat: phytoene desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.2   0.1   6.4e-08   2.2e-05       4      69 ..       2      74 ..       1      82 [. 0.80

  Alignments for each domain:
  == domain 1    score: 21.2 bits;  conditional E-value: 6.4e-08
    TIGR02731  4 iagaglaglsaakylada..ghtp.....ivleardvlggkvaawkdedgdwyetglhiffgaypnllqllke 69
                 + g+g++gl+aa   a+a  g t      ++lea+   gg+v +   +dg   + g+ +f+  yp +++ll+ 
  MMETSP1061-20121228|48262_1  2 VIGGGVSGLTAAITAAEAaaGETKkkmkiVLLEANTNCGGRVNSVTTDDGFVLDEGFAVFIEEYPAVKKLLDY 74
                 6799*****999887765225432222326789999**********************************975 PP

>> TIGR02732  zeta_caro_desat: carotene 7,8-desaturase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.3   0.1   6.8e-08   2.3e-05       4      71 ..       2      76 ..       1      83 [. 0.84

  Alignments for each domain:
  == domain 1    score: 21.3 bits;  conditional E-value: 6.8e-08
    TIGR02732  4 ivgaglaglatavelvdag.......hevelyesrsflggkvgswvdkdgnhiemglhvffgcyanlfkllkkvg 71
                 ++g g++gl++a+  ++a        +++ l e+ +  gg+v s + +dg  ++ g+ vf+  y  + kll+  g
  MMETSP1061-20121228|48262_1  2 VIGGGVSGLTAAITAAEAAagetkkkMKIVLLEANTNCGGRVNSVTTDDGFVLDEGFAVFIEEYPAVKKLLDYDG 76
                 79***********9887532232222467889**********************************999998665 PP

>> TIGR00275  TIGR00275: flavoprotein, HI0933 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.4   1.3   4.7e-07   0.00016       3      37 ..       2      43 ..       1      47 [. 0.86

  Alignments for each domain:
  == domain 1    score: 18.4 bits;  conditional E-value: 4.7e-07
    TIGR00275  3 iiGgGaaGlmaAitaae.......egakVlllEknkkigkKl 37
                 +iGgG +Gl+aAitaae       ++ k++llE+n+++g  +
  MMETSP1061-20121228|48262_1  2 VIGGGVSGLTAAITAAEaaagetkKKMKIVLLEANTNCGGRV 43
                 9**************9877776666789*******9999765 PP

>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.1   1.2e-06   0.00039     384     423 ..       2      48 ..       1      73 [. 0.78

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 1.2e-06
    TIGR03997 384 vvGgGPaGleaaataar.......rGhrvtllereeelGGqvklaak 423
                  v+GgG +Gl+aa+taa+       +  +++lle +++ GG+v+ +++
  MMETSP1061-20121228|48262_1   2 VIGGGVSGLTAAITAAEaaagetkKKMKIVLLEANTNCGGRVNSVTT 48 
                  9*************985221221134689*************98765 PP

>> TIGR00292  TIGR00292: thiazole biosynthesis enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   0.1   1.1e-05    0.0039      26      59 ..       2      42 ..       1      64 [. 0.85

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.1e-05
    TIGR00292 26 ivGaGpsGLtaayylakeg.......lkvvvlerklaiGGG 59
                 ++G+G sGLtaa   a++        +k+v+le +   GG 
  MMETSP1061-20121228|48262_1  2 VIGGGVSGLTAAITAAEAAagetkkkMKIVLLEANTNCGGR 42
                 78*********999886544455566**********99995 PP

>> TIGR01372  soxA: sarcosine oxidase, alpha subunit family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   11.9   0.3   2.1e-05    0.0073     173     211 ..       2      47 ..       1      65 [. 0.82

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 2.1e-05
    TIGR01372 173 vvGaGpaGLaaAraAaraGa.......rvilvdeqaeaGGsllsea 211
                  v+G+G +GL+aA +Aa+a a       +++l++ +++ GG+++s +
  MMETSP1061-20121228|48262_1   2 VIGGGVSGLTAAITAAEAAAgetkkkmKIVLLEANTNCGGRVNSVT 47 
                  9*********999888765433444449*************98765 PP

>> TIGR02733  desat_CrtD: C-3',4' desaturase CrtD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.1   0.1   1.8e-05    0.0062       6      53 ..       2      57 ..       1      79 [. 0.75

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 1.8e-05
    TIGR02733  6 viGaGiaGltaaalla.......krGlevtlleaaaqvGGCa.stfkrrgfifdvG 53
                 viG+G++Gltaa   a       k+ +++ llea++  GG   s     gf++d G
  MMETSP1061-20121228|48262_1  2 VIGGGVSGLTAAITAAeaaagetKKKMKIVLLEANTNCGGRVnSVTTDDGFVLDEG 57
                 9*********8754432222222567999*********997514455678888876 PP

>> TIGR01813  flavo_cyto_c: flavocytochrome c
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.8   0.8   4.7e-05     0.016       4      38 ..       2      44 ..       1      53 [. 0.76

  Alignments for each domain:
  == domain 1    score: 11.8 bits;  conditional E-value: 4.7e-05
    TIGR01813  4 vvGsGlAGlsaaleakkag......laevvvleKapviGG..N 38
                 v+G G+ Gl+aa+ a +a        +++v+le    +GG  N
  MMETSP1061-20121228|48262_1  2 VIGGGVSGLTAAITAAEAAagetkkKMKIVLLEANTNCGGrvN 44
                 9************9987541122225789******99999444 PP

>> TIGR02485  CobZ_N-term: precorrin 3B synthase CobZ
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.7   0.4   4.9e-05     0.017       6      25 ..       2      21 ..       1      47 [. 0.88

  Alignments for each domain:
  == domain 1    score: 11.7 bits;  conditional E-value: 4.9e-05
    TIGR02485  6 viGgGlaglCaaiearraGa 25
                 viGgG++gl aai+a++a a
  MMETSP1061-20121228|48262_1  2 VIGGGVSGLTAAITAAEAAA 21
                 8****************988 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (95 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       196  (0.0477816); expected 82.0 (0.02)
Passed bias filter:                      183  (0.0446124); expected 82.0 (0.02)
Passed Vit filter:                        48  (0.0117016); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.21
# Mc/sec: 597.09
//
Query:       MMETSP1061-20121228|48265_1  [L=52]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (52 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        20  (0.00487567); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 326.83
//
Query:       MMETSP1061-20121228|48279_1  [L=333]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (333 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       134  (0.032667); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.14s 00:00:00.34 Elapsed: 00:00:00.24
# Mc/sec: 1831.35
//
Query:       MMETSP1061-20121228|48294_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.23
# Mc/sec: 304.15
//
Query:       MMETSP1061-20121228|48297_1  [L=77]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (77 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       105  (0.0255973); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 423.47
//
Query:       MMETSP1061-20121228|48306_1  [L=171]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (171 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.15s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1074.77
//
Query:       MMETSP1061-20121228|48329_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-05   22.0   0.1    2.2e-05   21.9   0.1    1.1  1  TIGR03072 release_prfH: putative peptide chain release factor H
    3.4e-05   20.7   0.0    3.5e-05   20.7   0.0    1.1  1  TIGR00019 prfA: peptide chain release factor 1
    0.00016   18.6   0.0    0.00017   18.5   0.0    1.1  1  TIGR00020 prfB: peptide chain release factor 2


Domain annotation for each model (and alignments):
>> TIGR03072  release_prfH: putative peptide chain release factor H
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.9   0.1   1.6e-08   2.2e-05     102     156 ..      26      84 ..       8      85 .] 0.81

  Alignments for each domain:
  == domain 1    score: 21.9 bits;  conditional E-value: 1.6e-08
    TIGR03072 102 eaeedeirfetlrasGpGGqhvnktesavR....avhlasGisvkvqseRsqhankrLa 156
                   + ed + f  +r+sG GGq vnk  + v      +  +s +  +vq+   q +  rL+
  MMETSP1061-20121228|48329_1  26 RIPEDKLEFSFVRSSGSGGQNVNKVSTKVElrldLTQRQSWMPAEVQDRFRQQQSHRLS 84 
                  56789999****************99888522335788888999999988888888875 PP

>> TIGR00019  prfA: peptide chain release factor 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.7   0.0   2.6e-08   3.5e-05     217     248 ..      25      56 ..      20      81 .. 0.89

  Alignments for each domain:
  == domain 1    score: 20.7 bits;  conditional E-value: 2.6e-08
    TIGR00019 217 vkinpkdlridtyrssGaGGqhvnttdsavri 248
                  v+i ++ l+ +  rssG GGq+vn++ + v++
  MMETSP1061-20121228|48329_1  25 VRIPEDKLEFSFVRSSGSGGQNVNKVSTKVEL 56 
                  89999**********************99976 PP

>> TIGR00020  prfB: peptide chain release factor 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.5   0.0   1.2e-07   0.00017     230     262 ..      24      56 ..      20      80 .. 0.91

  Alignments for each domain:
  == domain 1    score: 18.5 bits;  conditional E-value: 1.2e-07
    TIGR00020 230 dieikeedvridvyrasGaGGqhvnktdsavri 262
                  ++ i e+ +     r+sG+GGq+vnk ++ v +
  MMETSP1061-20121228|48329_1  24 HVRIPEDKLEFSFVRSSGSGGQNVNKVSTKVEL 56 
                  78999*********************9998865 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       44  (0.0107265); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 534.24
//
Query:       MMETSP1061-20121228|48331_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-17   60.4   0.0    2.3e-17   60.3   0.0    1.0  1  TIGR00977 LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
  ------ inclusion threshold ------
      0.035   11.0   0.0      0.036   11.0   0.0    1.0  1  TIGR02090 LEU1_arch: isopropylmalate/citramalate/homocitrate synthases


Domain annotation for each model (and alignments):
>> TIGR00977  LeuA_rel: 2-isopropylmalate synthase/homocitrate synthase family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.3   0.0   1.1e-20   2.3e-17      84     151 ..       2      69 ..       1      70 [] 0.98

  Alignments for each domain:
  == domain 1    score: 60.3 bits;  conditional E-value: 1.1e-20
    TIGR00977  84 dkqlqalikaetpvvtifGkswdlhveealkttleenlkmiydtveylkrfadeviydaehffdGyka 151
                  d+q+qal++++ p v +  k+    v+e l++t eenl+mi d+v+yl   ++ v+ d ehffdGyka
  MMETSP1061-20121228|48331_1   2 DPQIQALVESDVPTVCMVVKAHSWQVTEILRATREENLHMIKDSVAYLAGLGKTVLVDLEHFFDGYKA 69 
                  99*****************************************************************8 PP

>> TIGR02090  LEU1_arch: isopropylmalate/citramalate/homocitrate synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.0   0.0   1.7e-05     0.036      76     128 ..       4      56 ..       1      63 [. 0.89

  Alignments for each domain:
  == domain 1    score: 11.0 bits;  conditional E-value: 1.7e-05
    TIGR02090  76 didkaidcgvdsihlviatsdlhlkyklkkskdevlekaveaveyakehGliv 128
                   i + ++++v ++ +v+ +    +   l+ +++e l+++ ++v y    G  v
  MMETSP1061-20121228|48331_1   4 QIQALVESDVPTVCMVVKAHSWQVTEILRATREENLHMIKDSVAYLAGLGKTV 56 
                  588999***************************************98777555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       130  (0.0316919); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.22
# Mc/sec: 419.97
//
Query:       MMETSP1061-20121228|48374_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.27
# Mc/sec: 493.74
//
Query:       MMETSP1061-20121228|48390_1  [L=1221]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1221 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       179  (0.0436373); expected 82.0 (0.02)
Passed bias filter:                       97  (0.023647); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.52u 0.14s 00:00:00.66 Elapsed: 00:00:00.40
# Mc/sec: 4028.97
//
Query:       MMETSP1061-20121228|48398_1  [L=457]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (457 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                       99  (0.0241346); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.15s 00:00:00.41 Elapsed: 00:00:00.30
# Mc/sec: 2010.63
//
Query:       MMETSP1061-20121228|48411_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 409.17
//
Query:       MMETSP1061-20121228|48419_1  [L=288]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (288 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1727.86
//
Query:       MMETSP1061-20121228|48424_1  [L=255]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (255 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        69  (0.0168211); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.15s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1463.36
//
Query:       MMETSP1061-20121228|48432_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        61  (0.0148708); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|48441_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       37  (0.00901999); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 402.91
//
Query:       MMETSP1061-20121228|48453_1  [L=97]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (97 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        67  (0.0163335); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 640.15
//
Query:       MMETSP1061-20121228|48473_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 277.18
//
Query:       MMETSP1061-20121228|48479_1  [L=1076]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1076 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       151  (0.0368113); expected 82.0 (0.02)
Passed bias filter:                      134  (0.032667); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.50u 0.16s 00:00:00.66 Elapsed: 00:00:00.52
# Mc/sec: 2731.16
//
Query:       MMETSP1061-20121228|48481_1  [L=1036]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.9e-40  136.0   0.0    6.1e-40  135.4   0.0    1.2  1  TIGR01388 rnd: ribonuclease D


Domain annotation for each model (and alignments):
>> TIGR01388  rnd: ribonuclease D
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  135.4   0.0   1.5e-43   6.1e-40       1     286 [.     294     594 ..     294     611 .. 0.85

  Alignments for each domain:
  == domain 1    score: 135.4 bits;  conditional E-value: 1.5e-43
    TIGR01388   1 littddeLatvcealrtedv....valDTEFvRerTfyPklgLiqvad.geelaliDPlvi..idlspllelladesvvKvlHaaseDlevfknlfgvlPkPlfDTqiaaallGlgesvgydklVkevl.eveldKsesrtDWlaRPLtdkqleYAaaDVtyLlelyekLserleeegrl...aaleeeaelltdkrtkdsdpeeayreiksar....klkpkelavlkalaaWRereAreRdkprnfvlkeeallelarlaprnleeleel.glkgkeirksgdkllalvkeAlalPedel 286
                  +i t++eL ++ + l++e++    +a+D E    r f   ++Liq+   + +  liDP  +     ++l+  la++++vKv+H a  D+  +++ fg+  + lfDT  aa +l ++ s g++ l ++++ +ve dKs + +DW++RPL  +  eYA  D  yLl++y++++  l++++ +   +alee  ++ t + t ++   + yr +++ r    +l++++  vl++l +WR + Are d++  +v  +++l+ la   p nl+ l+ l ++ +    ++++++la++++ l+   ++ 
  MMETSP1061-20121228|48481_1 294 WIDTPEELTKLKQLLESEELglqeIAIDLEAHSYRSFSGMICLIQISVkDGKDFLIDPFPLwnGIHDALAPTLANPNIVKVFHGADSDIAWLQRDFGLYVVNLFDTGRAARALKFP-SAGFAYLLEHYVeGVEADKSHQLSDWRQRPLPSAMKEYATMDTHYLLDIYSAMKYDLAHNKNTsieKALEESRKVCTIRYTPEVFRPDGYRSLTQRRghktQLNSRQDEVLRELWDWRDQIARENDESNAYVCTNTQLMRLAMACPVNLSTLQGLlQPMPPLLLRTSKEVLAIIQNCLKSRPSSS 594
                  6777777777666666554333339*********************86156889***8665437789**********************************************998.78*****9986527*******************************************987764222577888888999999999999******976533337788999**********************************************967999999999*********9998644443 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1036 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       120  (0.029254); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.46u 0.14s 00:00:00.60 Elapsed: 00:00:00.45
# Mc/sec: 3038.68
//
Query:       MMETSP1061-20121228|48491_1  [L=394]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (394 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        98  (0.0238908); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.28
# Mc/sec: 1793.23
//
Query:       MMETSP1061-20121228|48523_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.11s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 629.95
//
Query:       MMETSP1061-20121228|48536_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        49  (0.0119454); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.12s 00:00:00.20 Elapsed: 00:00:00.20
# Mc/sec: 382.77
//
Query:       MMETSP1061-20121228|48537_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       133  (0.0324232); expected 82.0 (0.02)
Passed bias filter:                      117  (0.0285227); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 470.57
//
Query:       MMETSP1061-20121228|48543_1  [L=743]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (743 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.34u 0.13s 00:00:00.47 Elapsed: 00:00:00.52
# Mc/sec: 1885.92
//
Query:       MMETSP1061-20121228|48556_1  [L=105]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (105 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.23
# Mc/sec: 602.56
//
Query:       MMETSP1061-20121228|48571_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|48587_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        27  (0.00658216); expected 82.0 (0.02)
Passed bias filter:                       26  (0.00633837); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.24
# Mc/sec: 258.48
//
Query:       MMETSP1061-20121228|48575_1  [L=876]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.3e-29  101.4   0.6    2.2e-29  100.6   0.4    1.3  1  TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
    2.2e-22   77.4   0.2    3.9e-22   76.6   0.1    1.3  1  TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase
    1.5e-19   68.3   0.7    2.5e-19   67.6   0.5    1.3  1  TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase
    2.1e-19   68.0   0.2    3.2e-19   67.4   0.1    1.2  1  TIGR01829 AcAcCoA_reduct: acetoacetyl-CoA reductase
    4.6e-18   63.4   0.4    9.3e-18   62.4   0.3    1.5  1  TIGR02415 23BDH: acetoin reductases
    6.4e-18   62.8   2.5      1e-17   62.2   1.8    1.2  1  TIGR03206 benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
    6.4e-16   55.7   1.5    9.3e-16   55.1   1.0    1.1  1  TIGR02632 RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
    3.2e-14   50.8   4.1      4e-14   50.5   1.3    2.1  2  TIGR03971 SDR_subfam_1: oxidoreductase, SDR family
      1e-11   42.5   1.2    1.7e-11   41.8   0.8    1.3  1  TIGR01831 fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
    7.6e-11   39.7   0.1    1.5e-10   38.8   0.1    1.4  1  TIGR01500 sepiapter_red: sepiapterin reductase
    2.3e-06   25.1   0.1    4.6e-06   24.2   0.1    1.4  1  TIGR01289 LPOR: light-dependent protochlorophyllide reductase
    0.00028   17.9   1.3     0.0012   15.9   0.9    1.9  1  TIGR02685 pter_reduc_Leis: pteridine reductase
    0.00095   16.3   1.0     0.0018   15.4   0.7    1.3  1  TIGR03325 BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
  ------ inclusion threshold ------
      0.016   12.2   0.3      0.028   11.4   0.2    1.3  1  TIGR00507 aroE: shikimate 5-dehydrogenase
        9.9    2.1  12.4         14    1.6   8.6    1.1  1  TIGR00934 2a38euk: potassium uptake protein, Trk family


Domain annotation for each model (and alignments):
>> TIGR01830  3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  100.6   0.4   8.2e-32   2.2e-29       1     181 [.     332     513 ..     332     527 .. 0.92

  Alignments for each domain:
  == domain 1    score: 100.6 bits;  conditional E-value: 8.2e-32
    TIGR01830   1 alvtGasrgiGkaiakklakegakvviterskeekaeelaeelke.agvkaaavkldvsdeeevkelveeveeelgeidilvnnAGitrDklllrmkeedwdevikvnLkgvfnvtkavlkkmikkrsGriinissvvgll.GnagqanYaasKaGligltkslakElasrnitvnavaPGfi 181
                  al+tGasrgiG+aia +la+  + +v+  r + +k+++la++l++ +gvk+ ++ +d+++ ++++++ +++ ++  ++dil+nnAG++ ++ ++  k  d ++++ +n  ++ +++    + m k+r+Gri+ +ss++gl  G+++ a Y a Ka   +l+ s+a+E+ + ++ v +v PG +
  MMETSP1061-20121228|48575_1 332 ALITGASRGIGRAIAVELARWEIPLVLVAR-DVDKLAQLASDLEAcYGVKCCVLGADLTQINAAERIKQATDDAGISVDILINNAGVASEGQAVDTKTADVERMVILNSLTYAKLSTLYGQDMKKRRRGRILMMSSMAGLCnGSPNTAIYGACKAFGKSLALSMAREMEKYGVGVTCVMPGAV 513
                  79**********************999966.5666788888888769***************99999888888888********************************99999**************************854***************************************77 PP

>> TIGR01963  PHB_DH: 3-hydroxybutyrate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.6   0.1   1.4e-24   3.9e-22       4     183 ..     332     513 ..     329     520 .. 0.91

  Alignments for each domain:
  == domain 1    score: 76.6 bits;  conditional E-value: 1.4e-24
    TIGR01963   4 alvtGaasGiglaiakelaaaGakvvvndleeeaaeaaakelee.aggevlalkadvtkeeeiadlieavaaefgsldiLvnnAGiqhvapieefptekfekiiavnltsafhtiraalpimkkqgwGriiniasvhgl.vasafKsaYvaaKHglvGltKvlAlEvAetgitanaicPgyv 183
                  al+tGa+ Gig+aia ela+    +v++  + ++++++a++le+  g+++  l ad+t+ ++ +++ +a+ ++  s+diL+nnAG+    +  +  t++ e+++ +n  + ++++      mkk+ +Gri+ ++s+ gl  +s+  + Y a K     l+ ++A E+ + g+ + ++ Pg v
  MMETSP1061-20121228|48575_1 332 ALITGASRGIGRAIAVELARWEIPLVLVARDVDKLAQLASDLEAcYGVKCCVLGADLTQINAAERIKQATDDAGISVDILINNAGVASEGQAVDTKTADVERMVILNSLTYAKLSTLYGQDMKKRRRGRILMMSSMAGLcNGSPNTAIYGACKAFGKSLALSMAREMEKYGVGVTCVMPGAV 513
                  89*****************************8888888887765279**************888877777788889***********999999999*******99988888888888889******************9569***********99999*********************987 PP

>> TIGR01832  kduD: 2-deoxy-D-gluconate 3-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.6   0.5   9.2e-22   2.5e-19       7     187 ..     331     514 ..     326     527 .. 0.86

  Alignments for each domain:
  == domain 1    score: 67.6 bits;  conditional E-value: 9.2e-22
    TIGR01832   7 valvtGantGlGqgiavglaeaGadivgvg..iselsetqekvea.lGrkflslkadladeeaakalvdeaveeagkidilvnnaGiirredavefsekdwddvlnvnlkavfllsqavakkllkqGrkgkiiniasllsfqGGi.rvpsytasksavaGltkllanewakkginvnaiaPGyle 187
                   al+tGa++G+G++iav la+    +v v+  + +l + ++ +ea  G k   l adl++++aa+++ + + ++   +dil+nnaG+    +av+   +d + ++ +n  +   ls   ++++ k+ r+g+i+ ++s+  +  G  + + y a+k     l+ ++a e+ k+g+ v  + PG + 
  MMETSP1061-20121228|48575_1 331 FALITGASRGIGRAIAVELARWEIPLVLVArdVDKLAQLASDLEAcYGVKCCVLGADLTQINAAERIKQATDDAGISVDILINNAGVASEGQAVDTKTADVERMVILNSLTYAKLSTLYGQDMKKR-RRGRILMMSSMAGLCNGSpNTAIYGACKAFGKSLALSMAREMEKYGVGVTCVMPGAVY 514
                  69******************9988777666225677777777776369****************976655555555****************************************9999987655.69**********98666516788********************************764 PP

>> TIGR01829  AcAcCoA_reduct: acetoacetyl-CoA reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   67.4   0.1   1.2e-21   3.2e-19       3     183 ..     332     513 ..     330     533 .. 0.90

  Alignments for each domain:
  == domain 1    score: 67.4 bits;  conditional E-value: 1.2e-21
    TIGR01829   3 alvtGglgGiGtaickrlakdGykvvanvapneerakewlqekevegfdvavvkadvssfeeakaavakveaelG.pvdvlvnnaGitrdavfkkmtkeqWeevidtnlnsvfnvtrpviegmlergfGriinissvnGl.kGqfGqanysaakaGliGftkalaqegakkgvtvnviaPGyi 183
                  al+tG+++GiG+ai+ +la+  + +v   +  ++ a+   + ++  g +  v+ ad++++++a +++++ +++ G +vd+l+nnaG++ +      ++++ e ++  n  +  ++     ++m++r  Gri+ +ss+ Gl  G    a y a+ka    ++ ++a+e  k+gv v  + PG +
  MMETSP1061-20121228|48575_1 332 ALITGASRGIGRAIAVELARWEIPLVLVARDVDKLAQLASDLEACYGVKCCVLGADLTQINAA-ERIKQATDDAGiSVDILINNAGVASEGQAVDTKTADVERMVILNSLTYAKLSTLYGQDMKKRRRGRILMMSSMAGLcNGSPNTAIYGACKAFGKSLALSMAREMEKYGVGVTCVMPGAV 513
                  9*******************99999988887777777778888999*************9876.5678888888757*************999999999999999899888899999999*******************8578999999********************************87 PP

>> TIGR02415  23BDH: acetoin reductases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.3   3.4e-20   9.3e-18       3     184 ..     332     514 ..     330     527 .. 0.89

  Alignments for each domain:
  == domain 1    score: 62.4 bits;  conditional E-value: 3.4e-20
    TIGR02415   3 alvtGaaqGiGkaiaerLakdGfavavadlneetaketakelke.kgtkavavkldvsdkseveeaveqaveklG.eldvlvnnaGvalvtpileiteeeleklynvnvkgvlfGiqaaaekfkklkhkGkiinaasiagv.egspelsaysstkfavrgltqtaakeLakkgitvnayaPGivk 184
                  al+tGa++GiG+aia  La+  + ++++  + +++++ a++l++  g k  ++ +d+++ ++  e ++qa+++ G ++d+l+nnaGva      + +  ++e++  +n   ++  +     +  k++ +G+i+  +s+ag  +gsp+ ++y + k   ++l+ + a+e+ k g+ v +  PG v 
  MMETSP1061-20121228|48575_1 332 ALITGASRGIGRAIAVELARWEIPLVLVARDVDKLAQLASDLEAcYGVKCCVLGADLTQINA-AERIKQATDDAGiSVDILINNAGVASEGQAVDTKTADVERMVILNSL-TYAKLSTLYGQDMKKRRRGRILMMSSMAGLcNGSPNTAIYGACKAFGKSLALSMAREMEKYGVGVTCVMPGAVY 514
                  9***********************999999988888888888873699*********98765.567999999999679**************************998854.56778888889999999************6489**************************************884 PP

>> TIGR03206  benzo_BadH: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.2   1.8   3.7e-20     1e-17       6     185 ..     332     513 ..     328     527 .. 0.91

  Alignments for each domain:
  == domain 1    score: 62.2 bits;  conditional E-value: 3.7e-20
    TIGR03206   6 aivtgggggiggaicrrfaeegakvavldlnaeaaekvaaairek.ggkaeavavditdrasvdaavaaaeealgpvdvlvnnagwdvlkpflktekaewerliainltgalymhhavlkgmverkagrivniasdaar.vgssgeavyaackgglvafsktlarelarhgitvnvvcpgpt 185
                  a++tg + gig ai   +a+    + ++  + +   ++a+++ +  g k+  + +d+t+ ++ +    a+++a   vd+l+nnag    ++ ++t+ a+ er++ +n      +     + m +r++gri+ ++s a+   gs   a+y ack    +++ ++are+ + g+ v  v pg  
  MMETSP1061-20121228|48575_1 332 ALITGASRGIGRAIAVELARWEIPLVLVARDVDKLAQLASDLEACyGVKCCVLGADLTQINAAERIKQATDDAGISVDILINNAGVASEGQAVDTKTADVERMVILNSLTYAKLSTLYGQDMKKRRRGRILMMSSMAGLcNGSPNTAIYGACKAFGKSLALSMAREMEKYGVGVTCVMPGAV 513
                  79******************9999999999999999999999886266788899*********999999999999********************************99988999999999****************962689999********9999**********************86 PP

>> TIGR02632  RhaD_aldol-ADH: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.1   1.0   3.4e-18   9.3e-16     416     600 ..     331     514 ..     308     527 .. 0.87

  Alignments for each domain:
  == domain 1    score: 55.1 bits;  conditional E-value: 3.4e-18
    TIGR02632 416 valvtGgasGiGrevarrlvdeGahvvladldaeaaeavaaelvdkfGadkavalkldvtdeeavkaafaevalayGGvdivvnnaGiavskpleeteleeWdlnldilatGyflvareaarllrkqglggnlvfiasknavva.kknalaysaakaaeahlvrllaielaelgirvntvaPdavl 600
                   al+tG++ GiGr++a+ l+     +vl+  d +++++ a +l   +G   +  l +d+t+ +a +   ++   a   vdi++nnaG+a+  +  +t++ + ++ + ++   y  ++    + ++k+   g +++++s  +++  ++n+  y a+ka  + l+  +a e+ ++g+ v  v P av 
  MMETSP1061-20121228|48575_1 331 FALITGASRGIGRAIAVELARWEIPLVLVARDVDKLAQLASDLEACYGVKCC-VLGADLTQINAAERIKQATDDAGISVDILINNAGVASEGQAVDTKTADVERMVILNSLTYAKLSTLYGQDMKKRRR-GRILMMSSMAGLCNgSPNTAIYGACKAFGKSLALSMAREMEKYGVGVTCVMPGAVY 514
                  589*********************************************9765.5999999988766555555555558**************************9999999999999999999988765.688999999999762688899********************************995 PP

>> TIGR03971  SDR_subfam_1: oxidoreductase, SDR family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.1   0.0       3.4   9.2e+02     134     158 ..     119     143 ..     116     146 .. 0.88
   2 !   50.5   1.3   1.5e-16     4e-14       6     211 ..     332     526 ..     328     540 .. 0.83

  Alignments for each domain:
  == domain 1    score: -3.1 bits;  conditional E-value: 3.4
    TIGR03971 134 avvPalierknGGsiiivssvaglk 158
                  a +P  +   +GG ++  +s+ g +
  MMETSP1061-20121228|48575_1 119 ASIPRKVKVTEGGKMVDAASSDGFR 143
                  899**************99999875 PP

  == domain 2    score: 50.5 bits;  conditional E-value: 1.5e-16
    TIGR03971   6 alitGaarGqGraeavrlaaeGadiiaidlceplsdvvtypaatredldetaklvealGrkvlarkadvrkleelravveegveefGrldvvvanaGvlsygrafelseeqWdtvldvnlkGvWktvkavvPalierknGGsiiivssvagl.kalpglahyaaakhGlvgltktlanelaeygirvnsihPtsv.dtamiepeamre 211
                  alitGa+rG Gra av la+   +i  + +++++++          dl+         G k  +  ad+ ++++ + + + + +    +d++++naGv+s g+a + +  + + ++ +n   ++  + +   + + ++  G i+++ss+agl ++ p++a y a+k    +l+ ++a+e+ +yg+ v  + P +v dt   ++  +r+
  MMETSP1061-20121228|48575_1 332 ALITGASRGIGRAIAVELARW--EIPLVLVARDVDKLA----QLASDLEA------CYGVKCCVLGADLTQINAAERIKQATDDAGISVDILINNAGVASEGQAVDTKTADVERMVILNSL-TYAKLSTLYGQDMKKRRRGRILMMSSMAGLcNGSPNTAIYGACKAFGKSLALSMAREMEKYGVGVTCVMPGAVyDTDFRNNSGTRK 526
                  9******************96..555556677775444....22334443......4699**************99988777777779***************************999954.666777777787888889***********94689*********99889***********************995666666555555 PP

>> TIGR01831  fabG_rel: putative 3-oxoacyl-(acyl-carrier-protein) reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.8   0.8   6.2e-14   1.7e-11       2     186 ..     333     518 ..     332     535 .. 0.75

  Alignments for each domain:
  == domain 1    score: 41.8 bits;  conditional E-value: 6.2e-14
    TIGR01831   2 lvtgasrgigraialklaadgfeiavhyrsdradaeesvaaira.qggnarllkfdvadrvavrevleadiaehgayygv.vlnagiardaafpalseedwd.avietnldgfynvihplvmpmirarkggriitlasvsgvm.gnrgqvnysaakagligatkalavelakrkitvnciapgli.dtem 186
                  l+tgasrgigraia++la     + +  r     a + +++++a  g+++ +l  d+++  a+  + +a  ++ g    + + nag+a +        +d + +vi  +l   y  +  l    ++ r+ gri+ ++s++g+  g      y a+ka     + ++a e+ k  + v c+ pg + dt++
  MMETSP1061-20121228|48575_1 333 LITGASRGIGRAIAVELARWEIPLVLVARDVDKLA-QLASDLEAcYGVKCCVLGADLTQINAAERIKQA-TDDAGISVDIlINNAGVASEGQAVDTKTADVErMVILNSL--TYAKLSTLYGQDMKKRRRGRILMMSSMAGLCnGSPNTAIYGACKAFGKSLALSMAREMEKYGVGVTCVMPGAVyDTDF 518
                  89***************987776666555555445.556667653799*********998887766655.56666666552789***99865444444454415555555..488899999999999**************8637778889*****965555556667999999*********7637775 PP

>> TIGR01500  sepiapter_red: sepiapterin reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   38.8   0.1   5.4e-13   1.5e-10       2     200 ..     331     518 ..     330     525 .. 0.78

  Alignments for each domain:
  == domain 1    score: 38.8 bits;  conditional E-value: 5.4e-13
    TIGR01500   2 lllvtGasrGfGrelaqelakrlkaegsvlvLlaRndeaLkeskaeieaevsalsvdlvsldleaakdvedllkaleesikkeeyerillinnaGtlgdvskrekelsDsknvqkyydsnvtslvvltsellkklkelqglektvvnlssLcai.kpfkswalYCaskaaRdmffqvLaleek.edvkvLnYapG.vlDtdm 200
                  ++l+tGasrG+Gr++a ela+      + lvL+aR+ + L ++  ++ea   + +     +dl +++  e     +++ +   + +  +linnaG   + ++  +  + +  v++   +n      l+++  + +k+       +  +ss++ + +  +  a Y a ka    +   +a e +   v v    pG v Dtd 
  MMETSP1061-20121228|48575_1 331 FALITGASRGIGRAIAVELAR----WEIPLVLVARDVDKLAQLASDLEA-CYGVKCCVLGADLTQINAAE----RIKQATDDAGISVDILINNAGVASE-GQAVD--TKTADVERMVILNSLTYAKLSTLYGQDMKKR--RRGRILMMSSMAGLcNGSPNTAIYGACKAFGKSLALSMAREMEkYGVGVTCVMPGaVYDTDF 518
                  589*****************9....6799********************.7888888999*****99555....45666777889999*******7655.55555..5777788888899888888888888888844..34456666666665245678999999999998888888888754667777777773447776 PP

>> TIGR01289  LPOR: light-dependent protochlorophyllide reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   1.7e-08   4.6e-06       6     145 ..     332     468 ..     328     479 .. 0.86

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 1.7e-08
    TIGR01289   6 viitgassglglaaakalvekgkwhvvmacrdlekaekaakslglpkd.sytilkldlasldsvrkfveqfresgrsldalvcnaavylpllkeplfsadgyelsvatnhlghfllsnllledlkksdekdkrliilgsvt 145
                  ++itgas g+g a a  l+      +v+  rd++k  + a +l    + + ++l  dl+++++  ++ +   ++g s+d+l+ na v        + +ad  e  v  n l +  ls l  +d+kk      r++++ s++
  MMETSP1061-20121228|48575_1 332 ALITGASRGIGRAIAVELARWE-IPLVLVARDVDKLAQLASDLEACYGvKCCVLGADLTQINAAERIKQATDDAGISVDILINNAGVASEGQAVDTKTAD-VERMVILNSLTYAKLSTLYGQDMKKRR--RGRILMMSSMA 468
                  78**********9999887654.778999*********9999988776257899*********************************9988888887776.799999*****************9854..55677766665 PP

>> TIGR02685  pter_reduc_Leis: pteridine reductase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.9   4.2e-06    0.0012       4      93 ..     332     416 ..     329     524 .. 0.82

  Alignments for each domain:
  == domain 1    score: 15.9 bits;  conditional E-value: 4.2e-06
    TIGR02685   4 alvtGaakriGrsiavklhqeGyrvvlhyrrsaeaasslaaelnaeransavvvkadlsnsasllssceeiidacfrafGrcdvlvnnas 93 
                  al+tGa++ iGr+iav+l +    +vl  r  ++ a +la++l+a       v  adl++ ++     e i +a+  a    d+l+nna 
  MMETSP1061-20121228|48575_1 332 ALITGASRGIGRAIAVELARWEIPLVLVARDVDKLA-QLASDLEACYGVKCCVLGADLTQINA----AERIKQATDDAGISVDILINNAG 416
                  99******************9999999888776665.69*******************99875....45555555556667899999985 PP

>> TIGR03325  BphB_TodD: cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.4   0.7   6.4e-06    0.0018       7     194 ..     331     521 ..     327     527 .. 0.75

  Alignments for each domain:
  == domain 1    score: 15.4 bits;  conditional E-value: 6.4e-06
    TIGR03325   7 vvlvtggasglgral.vd..rfvaegarvav.ldksaagleeleaahgdkvvgvegdvrllddhkeavarcveafgkldtlipnagiwdystalvdipddrideafdevfeinvkgyllavka.alpalvasrgsviftvsnagfypng.ggalytaakhavvglvkelayelapy.vrvngvapggls.tdlrgl 194
                   +l+tg + g+gra+ v+  r+      va  +dk a+   +lea +g k   +  d  +++  ++  +   +a   +d+li+nag+     + vd       +  + +  +n  +y +        +    rg +++  s ag+ ++    a+y a+k     l   +a e+  y v v  v pg +  td+r  
  MMETSP1061-20121228|48575_1 331 FALITGASRGIGRAIaVElaRWEIPLVLVARdVDKLAQLASDLEACYGVKCCVLGADLTQINAAERIKQATDDAGISVDILINNAGVASEG-QAVDTK----TADVERMVILNSLTYAKLSTLyGQDMKKRRRGRILMMSSMAGLCNGSpNTAIYGACKAFGKSLALSMAREMEKYgVGVTCVMPGAVYdTDFRNN 521
                  589***********94331144444444443468888888899999*****99999****99988877777777779**********8755.556544....4556788888888886544440344455567777777788888765425689999999888999999999988769999999999988999865 PP

>> TIGR00507  aroE: shikimate 5-dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.2    0.0001     0.028     120     239 ..     332     453 ..     316     456 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 0.0001
    TIGR00507 120 vliiGAG.GaakavaleLlkadkeviiaNRtvekaeelaerlqe.lgeilalsleevelkk.vdliinats.aglsgeideaevkaellkegklvvDlvynpl.etpllkeakkkgtkvidGlgM 239
                  +li GA  G ++a+a+eL++ +  ++++ R v+k  +la+ l++ +g ++ +  +++ + +  + i +at  ag+s +i    +++  ++++  +vD+ ++ +   ++l+     + ++++G +M
  MMETSP1061-20121228|48575_1 332 ALITGASrGIGRAIAVELARWEIPLVLVARDVDKLAQLASDLEAcYGVKCCVLGADLTQINaAERIKQATDdAGISVDI---LINNAGVASEGQAVDTKTADVeRMVILNSLTYAKLSTLYGQDM 453
                  6899996699********************************9988887777777766655488888888537888888...5555555555578899998884456667777778999999988 PP

>> TIGR00934  2a38euk: potassium uptake protein, Trk family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.6   8.6     0.053        14     252     442 ..     666     802 ..     609     848 .. 0.43

  Alignments for each domain:
  == domain 1    score: 1.6 bits;  conditional E-value: 0.053
    TIGR00934 252 rdidpedlyrsimmlqekheatakirdk....iseanslaaesdeessesrriqekikrrlstssieknsqqnltrlaktksfddskavrlersktidraeasdleeldrakdfqkmveknvkaakrkkknfkkreanlklfeksryakksdrneedngn.......kkdasksneseevsldseenayptyndeeedsrha 442
                  +d++ e+ ++s     +++ea+a+  +     i+                                                            +  + +++sd+ + ++ ++ q+++++n +a k +++++++  + +++ e+ ry+   +++ ++n++         ++s+s+ s ++s       +p +++++e s+ +
  MMETSP1061-20121228|48575_1 666 KDVKDEKEESSPLAPAGHDEAKAANEELttknIQV-----------------------------------------------------------TNGEAIDQSDITSPSNPPNRQNITKRNETAYKYESHSIERYPKPSEMEENERYQALKKEESKHNSEirekpnpPSEKSESKLSSKTSA------SPKKKHSQESSTGK 802
                  33333333333333333333322222211112222...........................................................2223333444444444444444444444444444444444444444444444443333333333332221222111111111111111......11111111111111 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (876 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       153  (0.0372989); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                        26  (0.00633837); expected 4.1 (0.001)
Passed Fwd filter:                        15  (0.00365675); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              15  [number of targets reported over threshold]
# CPU time: 0.51u 0.15s 00:00:00.66 Elapsed: 00:00:00.48
# Mc/sec: 2408.80
//
Query:       MMETSP1061-20121228|48611_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.20
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|48613_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    7.4e-05   20.0   0.0    7.4e-05   20.0   0.0    1.1  1  TIGR00046 TIGR00046: RNA methyltransferase, RsmE family


Domain annotation for each model (and alignments):
>> TIGR00046  TIGR00046: RNA methyltransferase, RsmE family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.8e-08   7.4e-05     183     213 ..      53      83 ..       9      89 .. 0.80

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.8e-08
    TIGR00046 183 eakkiviiiGPEGGfsekEiqllkekgfkev 213
                  ++ ++ +++GPEGG+s +E  l+ + + ++v
  MMETSP1061-20121228|48613_1  53 KPRTVHVLVGPEGGWSPRELDLFSRLQQETV 83 
                  58899*****************998776666 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        68  (0.0165773); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|48622_1  [L=387]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        4.6    4.2   8.3        8.5    3.3   5.7    1.4  1  TIGR00601 rad23: UV excision repair protein Rad23


Domain annotation for each model (and alignments):
>> TIGR00601  rad23: UV excision repair protein Rad23
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.3   5.7    0.0021       8.5      83     166 ..      26     112 ..       2     113 .. 0.67

  Alignments for each domain:
  == domain 1    score: 3.3 bits;  conditional E-value: 0.0021
    TIGR00601  83 kaaePaatpesaptptp.satpasvaekksaaPasa..veeessaeeeatatalesedtsaesegdsdretlvvGsereetveeime 166
                   +a+P+  p+++pt  p + + + +++ +++ P+s+   +++s ++ e+t +++ s +++    ++ dr++l+ G  r+ t+ ++++
  MMETSP1061-20121228|48622_1  26 PSASPTDDPSAVPTNVPtNMPSVHPSAIPTDVPSSSpsHIPSSVPSLEPTISSMPSLSPTFCGVTPEDRDALIRGILRDATLANLVD 112
                  455566666666666663333444444455555553115566666666666777777777777888999999999999999988875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (387 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.30
# Mc/sec: 1702.66
//
Query:       MMETSP1061-20121228|48630_1  [L=579]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (579 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        54  (0.0131643); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.27
# Mc/sec: 2830.43
//
Query:       MMETSP1061-20121228|48631_1  [L=481]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (481 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.14s 00:00:00.37 Elapsed: 00:00:00.26
# Mc/sec: 2441.80
//
Query:       MMETSP1061-20121228|48635_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       46  (0.011214); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.16s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 401.47
//
Query:       MMETSP1061-20121228|48642_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 417.09
//
Query:       MMETSP1061-20121228|48643_1  [L=214]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (214 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.15s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1129.83
//
Query:       MMETSP1061-20121228|48646_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        33  (0.00804486); expected 82.0 (0.02)
Passed bias filter:                       33  (0.00804486); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 520.62
//
Query:       MMETSP1061-20121228|48645_1  [L=498]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (498 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                       92  (0.0224281); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.13s 00:00:00.38 Elapsed: 00:00:00.28
# Mc/sec: 2347.52
//
Query:       MMETSP1061-20121228|48649_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      1e-05   22.2   0.0      1e-05   22.2   0.0    1.0  1  TIGR00574 dnl1: DNA ligase I, ATP-dependent (dnl1)


Domain annotation for each model (and alignments):
>> TIGR00574  dnl1: DNA ligase I, ATP-dependent (dnl1)
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.2   0.0   2.5e-09     1e-05      74     125 ..       2      54 ..       1      78 [. 0.85

  Alignments for each domain:
  == domain 1    score: 22.2 bits;  conditional E-value: 2.5e-09
    TIGR00574  74 gsqdkkikllksLlkeas.pleakylirlieeklrigiaektildalakaall 125
                   sq+ k + +k+Ll++a+ + e k+++r +++klrig+a+ t+l +la+a+ +
  MMETSP1061-20121228|48649_1   2 SSQKLKVDKIKRLLVAAQdSVETKFIVRGLQGKLRIGLARSTVLVSLAHALAM 54 
                  589999999**9988775278**************************999855 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 554.35
//
Query:       MMETSP1061-20121228|48654_1  [L=195]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (195 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        99  (0.0241346); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.15u 0.13s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1119.04
//
Query:       MMETSP1061-20121228|48665_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.27
# Mc/sec: 420.41
//
Query:       MMETSP1061-20121228|48667_1  [L=152]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (152 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.20
# Mc/sec: 1003.12
//
Query:       MMETSP1061-20121228|48669_1  [L=89]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.3e-05   20.7   2.6    9.6e-05   20.5   1.8    1.2  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family
     0.0039   14.2   0.1     0.0045   14.0   0.1    1.0  1  TIGR00306 apgM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form
  ------ inclusion threshold ------
      0.033   11.4   0.1      0.041   11.1   0.1    1.1  1  TIGR03841 F420_Rv3093c: probable F420-dependent oxidoreductase, Rv3093c family


Domain annotation for each model (and alignments):
>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.5   1.8     7e-08   9.6e-05      57     101 ..      29      73 ..       7      79 .. 0.86

  Alignments for each domain:
  == domain 1    score: 20.5 bits;  conditional E-value: 7e-08
    TIGR03495  57 krneeaqaqLrqqlaqaeallaqrekrierLlreneelRrWadtp 101
                  k ++ a+a+   + ++ e+  +  ++rie L +en++l+rW d++
  MMETSP1061-20121228|48669_1  29 KLKAMARAAITSEDESQEKIIRMLQQRIEVLEDENAQLKRWKDQR 73 
                  5577899**********************************9986 PP

>> TIGR00306  apgM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.1   3.3e-06    0.0045     153     222 ..      20      83 ..       7      86 .. 0.87

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 3.3e-06
    TIGR00306 153 sdkvsdedPkdegkkvkkikplaeseeakktAellnkllkesaevLqnheinekrakkgkapAnllllrg 222
                   ++v++++Pk +++  ++i+  +es+e       + ++l++  evL++ + + kr k ++++A +ll + 
  MMETSP1061-20121228|48669_1  20 IQSVETTKPKLKAMARAAITSEDESQE------KIIRMLQQRIEVLEDENAQLKRWKDQRNKADALLSQY 83 
                  56899****999999999999877776......67789999*************************9876 PP

>> TIGR03841  F420_Rv3093c: probable F420-dependent oxidoreductase, Rv3093c family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.1   0.1     3e-05     0.041     179     223 ..      11      53 ..       6      60 .. 0.86

  Alignments for each domain:
  == domain 1    score: 11.1 bits;  conditional E-value: 3e-05
    TIGR03841 179 varvkarlklasarmeravprlavvvpvaVdpaaealdlirrslv 223
                   ar+ +rl  + + +e+++p+l++++++a+  + e++++i r+l 
  MMETSP1061-20121228|48669_1  11 LARLLGRL--TIQSVETTKPKLKAMARAAITSEDESQEKIIRMLQ 53 
                  68999999..4456999*************************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (89 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       325  (0.0792296); expected 82.0 (0.02)
Passed bias filter:                      226  (0.0550951); expected 82.0 (0.02)
Passed Vit filter:                        20  (0.00487567); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.12u 0.15s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 559.38
//
Query:       MMETSP1061-20121228|48676_1  [L=258]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00013   19.8  12.3     0.0066   14.3   8.5    2.3  1  TIGR03902 rhom_GG_cterm: rhombosortase


Domain annotation for each model (and alignments):
>> TIGR03902  rhom_GG_cterm: rhombosortase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.3   8.5   1.6e-06    0.0066      24     152 ..      59     206 ..      53     208 .. 0.62

  Alignments for each domain:
  == domain 1    score: 14.3 bits;  conditional E-value: 1.6e-06
    TIGR03902  24 lvHlnwaHlllnlagllllvllfer.rlr...............arrllllllllsllislglllllpeleaYvGLSGvlhGlfalgalrdirkkrksswl....lllgvlaklaleqltgasas.taeligarvaveaHlaGalsGlll 152
                    H++++Hll+nl  +l l+  ++  +++                 + l+ l++ ++l++ +l+ll++   +  GLSGv  +++a++a + + ++   ++l    l + v a +++++l + s++ +  l  ++v + aHl G+l Gll+
  MMETSP1061-20121228|48676_1  59 VSHTSFRHLLVNLFVFLNLSPALSSiKVPssswvsrtrrahaglSSAALWPLVVGGALSGNALFLLFRPRGSCLGLSGVTCAMLAVYASA-MPNRV-LRILllgiLPVSVKAATMVQVLLAVSLAgSVFLPSSPVSHLAHLGGLLFGLLY 206
                  679999999999999987543322111111112111111222221222333444455677788899999999****************97.44433.333334543344444555666666666655567899**************996 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (258 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.17u 0.12s 00:00:00.29 Elapsed: 00:00:00.22
# Mc/sec: 1547.87
//
Query:       MMETSP1061-20121228|48682_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       80  (0.0195027); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 401.71
//
Query:       MMETSP1061-20121228|48683_1  [L=111]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (111 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 697.66
//
Query:       MMETSP1061-20121228|48697_1  [L=104]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (104 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.28
# Mc/sec: 490.25
//
Query:       MMETSP1061-20121228|48707_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        43  (0.0104827); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 485.96
//
Query:       MMETSP1061-20121228|48711_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 369.57
//
Query:       MMETSP1061-20121228|48729_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.19
# Mc/sec: 382.07
//
Query:       MMETSP1061-20121228|48730_1  [L=100]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-08   30.5   0.0      2e-08   30.4   0.0    1.0  1  TIGR03903 TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
    8.9e-05   19.9   0.0    9.3e-05   19.8   0.0    1.1  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR03903  TOMM_kin_cyc: TOMM system kinase/cyclase multidomain protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.4   0.0   9.8e-12     2e-08      91     178 ..       2      87 ..       1      96 [. 0.89

  Alignments for each domain:
  == domain 1    score: 30.4 bits;  conditional E-value: 9.8e-12
    TIGR03903  91 alaaahdaGvvhRDLkPqnimvsaadveshakvLDFGigaLlpgvedadeatltrttevlGsPaYaaPeqLRgepvtaksDlYaWGLi 178
                  a++  h + +vhRD+   nim s + ++s  k++DFG +  l  + + +       te  Gs +  aPe +Rg    +k+D+++ G++
  MMETSP1061-20121228|48730_1   2 AVSYMHGKNIVHRDIECSNIMYSRQSEDSAIKLVDFGSACELEMIPN-HPGAYKFLTEKTGSLSVMAPEVIRGK-YGPKADVWSIGVV 87 
                  77889********************************9998888877.666677788999*************7.689******9987 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.8   0.0   4.5e-08   9.3e-05     102     136 ..       2      40 ..       1      64 [. 0.87

  Alignments for each domain:
  == domain 1    score: 19.8 bits;  conditional E-value: 4.5e-08
    TIGR03724 102 lvgklHkagivhgDlttsNiivk....ddklyliDfGLg 136
                  +v+ +H ++ivh D+  sNi+++    d+ + l+DfG +
  MMETSP1061-20121228|48730_1   2 AVSYMHGKNIVHRDIECSNIMYSrqseDSAIKLVDFGSA 40 
                  5889******************6566578899****965 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (100 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 599.95
//
Query:       MMETSP1061-20121228|48726_1  [L=477]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.3e-49  164.6   0.0    1.7e-39  134.2   0.0    2.7  2  TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase


Domain annotation for each model (and alignments):
>> TIGR00675  dcm: DNA (cytosine-5-)-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  134.2   0.0   4.2e-43   1.7e-39       2     190 ..     118     340 ..     117     369 .. 0.87
   2 !   27.2   0.0   1.5e-10   6.3e-07     277     327 ..     402     461 ..     381     463 .. 0.83

  Alignments for each domain:
  == domain 1    score: 134.2 bits;  conditional E-value: 4.2e-43
    TIGR00675   2 idLFaGiGGirlgleqagafklvfaseidkeavktyeanfke......kvskgDitkieksd..........................ipdfdiLlgGfPCqsFSvagkrkGfedtrGtLffeivrilkekkPkvfllENVkgLvshdkgrtfkviletleelGYkveykvlnakdFgvpQnReRiyivGfrk.........dendklafefpkpseksakkkrlkdlle 190
                  ++LFaG+GG+ ++l+  g  k++f se +++  + y++nf        k  ++D +k ++ +                           ++ d+L+gGfPCq+FS  g++ G++  +G+Lf eivr+l+  kPk+fllENV gLv  +  +t+k+i+ +le+ GY v  +v  a    v   R+R+++vG+r+         +  + ++fefp     +  + +l+d+l+
  MMETSP1061-20121228|48726_1 118 AELFAGMGGFGVALDALG-GKCLFVSELEEHLRELYHHNFVTlpnsfeKQTNHDGQKSTDRNitihgniyqvpdtsfptctasdtdsdSTSLDLLVGGFPCQPFSALGQQPGLQCPKGNLFLEIVRVLRVSKPKAFLLENVPGLVGME--ETLKIIVAALEDEGYDVTSEVCSARGLTVT-GRKRLFLVGLRRevtenitgdHALKRKQFEFPFI---PDLNLTLRDVLD 340
                  79***************9.*********************87765454445555555555559**********************************************************************************986..6**************************876.7**********99999888876677777888766...445555555555 PP

  == domain 2    score: 27.2 bits;  conditional E-value: 1.5e-10
    TIGR00675 277 vkkeriRrLtprEcarlqgFpddfefk.........vsksqlykqvGNsvvvpvieaiak 327
                   + + +Rr ++rE+ar++gFp+++ f            ++++y+++GN+v +p+i a+a 
  MMETSP1061-20121228|48726_1 402 KSPHPPRRFSVRELARMMGFPNSYDFLpprerqspmGYRKEQYRAIGNAVCPPLIAALAG 461
                  567899*****************887666666666667899***************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (477 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        86  (0.0209654); expected 82.0 (0.02)
Passed bias filter:                       83  (0.020234); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.26
# Mc/sec: 2421.49
//
Query:       MMETSP1061-20121228|48734_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       51  (0.012433); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|48739_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.7e-05   20.0   0.0    5.7e-05   20.0   0.0    1.0  1  TIGR02928 TIGR02928: orc1/cdc6 family replication initiation protein
     0.0043   13.5   0.0     0.0049   13.4   0.0    1.0  1  TIGR02329 propionate_PrpR: propionate catabolism operon regulatory protein PrpR
     0.0045   13.6   0.0     0.0045   13.6   0.0    1.0  1  TIGR02759 TraD_Ftype: type IV conjugative transfer system coupling protein TraD
     0.0056   14.0   0.0     0.0056   14.0   0.0    1.0  1  TIGR03015 pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
     0.0089   13.5   0.0     0.0089   13.5   0.0    1.1  1  TIGR02673 FtsE: cell division ATP-binding protein FtsE
  ------ inclusion threshold ------
      0.012   12.0   0.0      0.012   11.9   0.0    1.0  1  TIGR00602 rad24: checkpoint protein rad24
      0.018   12.5   0.0      0.021   12.3   0.0    1.1  1  TIGR01618 phage_P_loop: phage nucleotide-binding protein
      0.021   10.9   0.0      0.024   10.8   0.0    1.0  1  TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb
      0.024   12.1   0.0      0.026   11.9   0.0    1.1  1  TIGR02982 heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
      0.025   11.7   0.0      0.026   11.6   0.0    1.0  1  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau


Domain annotation for each model (and alignments):
>> TIGR02928  TIGR02928: orc1/cdc6 family replication initiation protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.0   0.0   1.4e-07   5.7e-05      33      71 ..      21      59 ..      13      65 .] 0.87

  Alignments for each domain:
  == domain 1    score: 20.0 bits;  conditional E-value: 1.4e-07
    TIGR02928 33 pilrgsrpsnvliyGktGtGKtavtkkvlkeleeaaeek 71
                  ++r+++ +++l++G++G GKt ++k +++ l+++ ee+
  MMETSP1061-20121228|48739_1 21 GLVRDREDQSILVSGESGAGKTETVKILMHDLASIQEER 59
                 679999**************************9988875 PP

>> TIGR02329  propionate_PrpR: propionate catabolism operon regulatory protein PrpR
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   1.2e-05    0.0049     233     267 ..      26      61 ..      18      64 .. 0.88

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.2e-05
    TIGR02329 233 rsdatvlieGesGtGk.elvaqalhqlsarrdrpfv 267
                  r+d ++l++GesG+Gk e v   +h+l++ ++++f 
  MMETSP1061-20121228|48739_1  26 REDQSILVSGESGAGKtETVKILMHDLASIQEERFA 61 
                  78999**********97788889*****99999994 PP

>> TIGR02759  TraD_Ftype: type IV conjugative transfer system coupling protein TraD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.6   0.0   1.1e-05    0.0045     172     201 ..      24      53 ..      13      63 .. 0.82

  Alignments for each domain:
  == domain 1    score: 13.6 bits;  conditional E-value: 1.1e-05
    TIGR02759 172 kesEvqhllidGttgsGKsealrklleair 201
                  ++ E q +l++G  g+GK+e ++ l++ + 
  MMETSP1061-20121228|48739_1  24 RDREDQSILVSGESGAGKTETVKILMHDLA 53 
                  4889****************9999987654 PP

>> TIGR03015  pepcterm_ATPase: putative secretion ATPase, PEP-CTERM locus subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.0   0.0   1.4e-05    0.0056      19      68 ..       3      53 ..       1      63 [. 0.71

  Alignments for each domain:
  == domain 1    score: 14.0 bits;  conditional E-value: 1.4e-05
    TIGR03015 19 Peflygskahkr.alayleyGlsereGfilitGevGaGkttlvrnllkkle 68
                 P+ l + ++++   lay      +++  il+ Ge GaGkt  v+ l++ l 
  MMETSP1061-20121228|48739_1  3 PRSLLPPHVYETsCLAYTGLVRDREDQSILVSGESGAGKTETVKILMHDLA 53
                 5555555555541355655555567789***************99998764 PP

>> TIGR02673  FtsE: cell division ATP-binding protein FtsE
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   2.2e-05    0.0089      27      52 ..      27      52 ..      10      63 .. 0.79

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 2.2e-05
    TIGR02673 27 kgeflfltGasGaGkttllklllgae 52
                 + + + ++G+sGaGkt  +k+l++ +
  MMETSP1061-20121228|48739_1 27 EDQSILVSGESGAGKTETVKILMHDL 52
                 4567889*************998765 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0     3e-05     0.012     109     135 ..      27      53 ..      16      61 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 3e-05
    TIGR00602 109 kkriLLitGPsGCgKsTvikiLsKelg 135
                  + + +L++G sG gK+ ++kiL   l 
  MMETSP1061-20121228|48739_1  27 EDQSILVSGESGAGKTETVKILMHDLA 53 
                  567899****************98875 PP

>> TIGR01618  phage_P_loop: phage nucleotide-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.3   0.0   5.2e-05     0.021      10      32 ..      26      48 ..      20      55 .. 0.87

  Alignments for each domain:
  == domain 1    score: 12.3 bits;  conditional E-value: 5.2e-05
    TIGR01618 10 rsesriliYgkpGlGktsvikyl 32
                 r ++ il+ g++G+Gkt ++k l
  MMETSP1061-20121228|48739_1 26 REDQSILVSGESGAGKTETVKIL 48
                 56699****************87 PP

>> TIGR03925  T7SS_EccC_b: type VII secretion protein EccCb
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.8   0.0   5.7e-05     0.024     358     390 ..      25      57 ..      17      63 .. 0.84

  Alignments for each domain:
  == domain 1    score: 10.8 bits;  conditional E-value: 5.7e-05
    TIGR03925 358 faeephllvlGdsesGktallraiaeevverns 390
                   +e++ +lv G+s++Gkt+ ++ +++ +++ ++
  MMETSP1061-20121228|48739_1  25 DREDQSILVSGESGAGKTETVKILMHDLASIQE 57 
                  578999********************9987444 PP

>> TIGR02982  heterocyst_DevA: ABC exporter ATP-binding subunit, DevA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   6.4e-05     0.026      33      62 ..      30      60 ..      17      64 .. 0.84

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 6.4e-05
    TIGR02982 33 iviltGpsGsGkt.tlltligglrsvqeGel 62
                  ++++G+sG+Gkt t+  l+  l s+qe   
  MMETSP1061-20121228|48739_1 30 SILVSGESGAGKTeTVKILMHDLASIQEERF 60
                 5789********977888999******9765 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   6.3e-05     0.026      32      63 ..      24      55 ..      15      63 .. 0.83

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 6.3e-05
    TIGR02397 32 knkiahayLfsGprGvGKTsiArilAkalNCe 63
                 +++  ++ L sG  G GKT + +il + l   
  MMETSP1061-20121228|48739_1 24 RDREDQSILVSGESGAGKTETVKILMHDLASI 55
                 67788999*****************8877655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      198  (0.0482691); expected 82.0 (0.02)
Passed Vit filter:                        67  (0.0163335); expected 4.1 (0.001)
Passed Fwd filter:                        10  (0.00243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              10  [number of targets reported over threshold]
# CPU time: 0.12u 0.19s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 343.17
//
Query:       MMETSP1061-20121228|48740_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 479.33
//
Query:       MMETSP1061-20121228|48745_1  [L=132]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (132 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       98  (0.0238908); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.16s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 829.65
//
Query:       MMETSP1061-20121228|48746_1  [L=145]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (145 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        72  (0.0175524); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 911.35
//
Query:       MMETSP1061-20121228|48750_1  [L=73]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (73 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 458.82
//
Query:       MMETSP1061-20121228|48753_1  [L=338]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.9e-05   21.0   0.2      0.052   10.2   0.0    3.0  3  TIGR03417 chol_sulfatase: choline-sulfatase


Domain annotation for each model (and alignments):
>> TIGR03417  chol_sulfatase: choline-sulfatase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   10.2   0.0   1.3e-05     0.052       3      63 ..      15      75 ..      13      86 .. 0.84
   2 !    2.2   0.0    0.0033        14     162     201 ..     225     264 ..     208     280 .. 0.81
   3 !    4.9   0.0    0.0005       2.1     253     284 ..     292     323 ..     275     327 .. 0.88

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.3e-05
    TIGR03417  3 pnililmvdqlagtllpaygpaevlkaPnlkrla..arsvvfdnaytasPlcaParasllsGk 63
                 p +l++++d +    ++  ++  +  +Pn+++ a  + sv++++ ++   +c+P+ra++l+G+
  MMETSP1061-20121228|48753_1 15 PSFLFMLADDIGWADFSY-NN-GTALTPNIDAWAraKGSVMLQDFHSGGTVCSPTRATVLTGR 75
                 77899999*999888876.44.67889****8752267999999******************8 PP

  == domain 2    score: 2.2 bits;  conditional E-value: 0.0033
    TIGR03417 162 ddevafkakqklydlarekdarPfcltvslthPhdPyvir 201
                  dd +  + +   y   r+k+++Pf   +s+   h P++ +
  MMETSP1061-20121228|48753_1 225 DDSIYLADAFSRYLKERKKQQKPFLAQISFHNCHIPFIGS 264
                  55555555556688899*******************9765 PP

  == domain 3    score: 4.9 bits;  conditional E-value: 0.0005
    TIGR03417 253 rayfaaisyvddkiGellevleetrladdtiv 284
                    y+a +  +d+ +G +l++l++ +  ++t+v
  MMETSP1061-20121228|48753_1 292 LDYYACLVELDNAVGMILKSLKKYGYYENTMV 323
                  57***************************997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (338 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.23u 0.11s 00:00:00.34 Elapsed: 00:00:00.22
# Mc/sec: 2027.83
//
Query:       MMETSP1061-20121228|48768_1  [L=392]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (392 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       139  (0.0338859); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.26
# Mc/sec: 1989.99
//
Query:       MMETSP1061-20121228|48776_1  [L=216]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (216 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.14s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1239.55
//
Query:       MMETSP1061-20121228|48784_1  [L=65]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (65 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 428.96
//
Query:       MMETSP1061-20121228|48781_1  [L=378]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.9e-06   25.8   0.0    3.4e-06   25.0   0.0    1.4  1  TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain


Domain annotation for each model (and alignments):
>> TIGR00556  pantethn_trn: phosphopantetheine--protein transferase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.0   0.0   8.2e-10   3.4e-06       4     121 ..     248     358 ..     245     365 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.0 bits;  conditional E-value: 8.2e-10
    TIGR00556   4 gvGiDiveikriaeqversgkfaervfspkEiealkkskaksrteflagrwaaKEAviKalgkgisgeellfkdievlkdekgkpeleligevaklaeklavvslsvsishekeyata 121
                  gvGiD++  +r         ++a+r+++p+E +al +      ++    r+++KEA++Ka+   + +    fk+ ev++   g + ++     + +   +a+++++    ++++y + 
  MMETSP1061-20121228|48781_1 248 GVGIDLEMTSRPGRP-----SLARRILTPDEQAALGAIPGLTVEQEVLLRFSLKEAIYKAAHPLLCQ-YVGFKEAEVTPFPDGTASCRWLLDNE-ADRPIAKLTAHWRTIDDGNYFLT 358
                  678887755543332.....69***********999999999999999****************999.999********999999888655555.55888888888888888777655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (378 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.14s 00:00:00.36 Elapsed: 00:00:00.25
# Mc/sec: 1995.68
//
Query:       MMETSP1061-20121228|48792_1  [L=88]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (88 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.25
# Mc/sec: 464.60
//
Query:       MMETSP1061-20121228|48794_1  [L=96]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (96 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       110  (0.0268162); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.12s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 527.96
//
Query:       MMETSP1061-20121228|48796_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        88  (0.0214529); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 282.18
//
Query:       MMETSP1061-20121228|48805_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       280  (0.0682594); expected 82.0 (0.02)
Passed bias filter:                      235  (0.0572891); expected 82.0 (0.02)
Passed Vit filter:                        15  (0.00365675); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1061-20121228|48806_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       112  (0.0273038); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.36
# Mc/sec: 260.31
//
Query:       MMETSP1061-20121228|48828_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       107  (0.0260848); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 464.83
//
Query:       MMETSP1061-20121228|48829_1  [L=1209]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-27   93.9   0.0    3.7e-27   93.1   0.0    1.2  1  TIGR01327 PGDH: phosphoglycerate dehydrogenase
    6.2e-07   27.3   0.1    1.1e-06   26.4   0.0    1.3  1  TIGR02072 BioC: biotin biosynthesis protein BioC
    9.9e-06   23.3   0.0    2.5e-05   22.0   0.0    1.6  1  TIGR01086 fucA: L-fuculose phosphate aldolase
     0.0002   18.6   0.0    0.00044   17.5   0.0    1.6  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
    0.00021   18.5   0.0     0.0032   14.6   0.0    2.3  2  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00023   18.5   0.5     0.0066   13.8   0.3    2.8  2  TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase


Domain annotation for each model (and alignments):
>> TIGR01327  PGDH: phosphoglycerate dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   93.1   0.0   5.4e-30   3.7e-27      42     303 ..     723     992 ..     719     997 .. 0.86

  Alignments for each domain:
  == domain 1    score: 93.1 bits;  conditional E-value: 5.4e-30
    TIGR01327  42 dalivRSatkvteelleaa.ekLkvigRaGvGvDNidieaatkkGilvvNaP.egntisaaElalalllalaRk.ipqadksvkekkWerk.kflGtElygktlGviGlGriGsevakrakalgm..kvlayDPyiseekaeklgve.llkdldellaeaDvitvHvPltketkgligkeelakmKkgviivNcaRGGiidEkALvealeegkvraaalDvfekEPpt.dnklleldnvvvtpHlgAsteEaqenvavevaeevlealkg 303
                  d+l+v    k++ + + +  +  + i+    G+D i ++aa ++Gi +  a  e+   s+a++ l   +   R+ +++         W+ + +  G++l   ++G iG+G i  e akr++al    +++ + P   + ++e+   + +   + +ll+ +Dvi   vPlt+ t gli+ +++  mK+++i +N aRG ++d + L+ al+e+ v  a lD    EP   d+ l + +n ++tpH + +t+   ++   ++ ++v ++l++
  MMETSP1061-20121228|48829_1 723 DVLVVNIGEKLDYDKIMELpSTTRLIVTLSAGLDHICVKAAEERGIRIRRAArEAIVKSVADYLLSNAIFGLRNgFQNVGVPFPGASWDLTwNSEGVDLDCSKIGFIGMGAIAIETAKRIRALSKscELVYHVPDDIRCRFEEGTHQmYHVGIADLLSTCDVIIPMVPLTESTTGLINYSSFSMMKRSAIFINMARGKVVDTSGLLRALDEKLVLHAILDTTDPEPLPpDHDLWRAKNCTITPHFATNTTYVRKELVEDIPNQVEDTLEE 992
                  788888889999876655537889999999****************88776516667799999998766555551677788899999**853557****************************7611455556766677887755541456799************************************************************************87799**********************************99975 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.4   0.0   1.7e-09   1.1e-06      32     197 ..     470     644 ..     458     668 .. 0.79

  Alignments for each domain:
  == domain 1    score: 26.4 bits;  conditional E-value: 1.7e-09
    TIGR02072  32 kfepakvLdiGcGtGiltrallkrfpqaelialDiseemleqakkkls.......nvqficgdieklplekks.fDlivSnlalQWlddlsevlaelarvlkpgGllafstfgketlkElrqlfkqv.ea.hglrflsleelkallkke.fellkleeelitlsFedvlevlrslKk 197
                  k ++ + Ld+G+G G+  r + k+ ++ +++ +D ++++    + +ls       ++ + +g  e+l+   ++ fD  +S  a+  +  +++++ e++rv+k gG l++s+++ +  k+ ++ ++   ++ +  ++ + +e  +   ++ +++++  +++ +    +++ +l+++K 
  MMETSP1061-20121228|48829_1 470 KPDRVRYLDMGAGNGAAARWICKQGKEIHITCIDACAKQSCENR-NLSdeeglgsQIAVAQGTYERLNSDYSNfFDGCMSQDAFIHAFTKRNAFMEAFRVTKGGGWLLISDLMRGDGKDGNEEMEVFvKEhNITNWATPNECVQFATEAgWSEVSFIDCTAEIV-VSLHGLLKKIKT 644
                  5566789******************************9984444.4445999****************7777789**********9*9*************************999888888888557554777888888887777777777777766554433.345555555555 PP

>> TIGR01086  fucA: L-fuculose phosphate aldolase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.0   0.0   3.6e-08   2.5e-05      74     197 ..    1064    1189 ..    1009    1202 .. 0.75

  Alignments for each domain:
  == domain 1    score: 22.0 bits;  conditional E-value: 3.6e-08
    TIGR01086   74 rfhlavyqsrpdanavvhnhaihcaavsilnksipaihymvaasgadeipcvpyatfgs.rklaeyvaegikesk..aillqhhgliacevnlekalwlahevevladlylktlaitdevpvlseee 197 
                    +h avy++r d++a+vh h+    a+s l+     i    aa    ++   p+      r+    +  ++k++k  ++l++ hg+ + ++ l  a  la   +  ++  l+ l +++++   se+ 
  MMETSP1061-20121228|48829_1 1064 IIHEAVYRTRSDVKAIVHLHTPATVAISCLEMGFVPIAQE-AAPFIGRVSRHPWHGVSNdREEQALLGDAVKDEKvnTLLMENHGFCTFGKTLGEAWVLAYYFDKACQTQLNCLQTGQKINYPSEKV 1189
                   5799***************************998888765.555566788889887765155566788999998833478899**********************************9998766654 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   6.4e-07   0.00044      47     156 ..     470     582 ..     444     612 .. 0.90

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 6.4e-07
    TIGR01983  47 kleglkvlDvGcGgGllseslarlgae..vtgiDlseelievAklhakkdplk.kieyelksveelaeeekesfDvvlamEvlEHvadleeilkecaellkpggilflstinr 156
                  k + ++ lD+G+G G  +  + ++g e  +t iD+++++    ++ +++++l  +i   + + e l+++ ++ fD  ++ +   H  + ++   e+ +++k gg+l++s + r
  MMETSP1061-20121228|48829_1 470 KPDRVRYLDMGAGNGAAARWICKQGKEihITCIDACAKQSCENRNLSDEEGLGsQIAVAQGTYERLNSDYSNFFDGCMSQDAFIHAFTKRNAFMEAFRVTKGGGWLLISDLMR 582
                  4568999*****************988779*****99888888888888888779*********************************999999***************8876 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.6   0.0   4.7e-06    0.0032      39     147 ..     472     583 ..     458     599 .. 0.81
   2 ?    1.3   0.0     0.054        37     184     218 ..     600     634 ..     588     639 .. 0.89

  Alignments for each domain:
  == domain 1    score: 14.6 bits;  conditional E-value: 4.7e-06
    TIGR01934  39 keekvlDvatGtGdlaielakkae.akvtgvDlseemLevakkkakek.eeanvefieadaeeLpfe.dnsfdavtiafGlRNvtdiekaLkelaRVlkpggrlvilefskp 147
                     + lD+ +G G  a +++k+ +  ++t +D +++     ++   e+   +++   ++  e+L  + +n fd +     +     +++a  e++RV k gg l+i ++++ 
  MMETSP1061-20121228|48829_1 472 DRVRYLDMGAGNGAAARWICKQGKeIHITCIDACAKQSCENRNLSDEEgLGSQIAVAQGTYERLNSDySNFFDGCMSQDAFIHAFTKRNAFMEAFRVTKGGGWLLISDLMRG 583
                  45678*****************999*********9987777777666788899***********9642777887666556666667788999**************999875 PP

  == domain 2    score: 1.3 bits;  conditional E-value: 0.054
    TIGR01934 184 Siekfpskeelaallkeagfeevryrsltfgvaai 218
                   i+++ + +e +++  eag++ev++ ++t+++++ 
  MMETSP1061-20121228|48829_1 600 NITNWATPNECVQFATEAGWSEVSFIDCTAEIVVS 634
                  5899999************************9875 PP

>> TIGR03328  salvage_mtnB: methylthioribulose-1-phosphate dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.3   0.0       0.8   5.5e+02     149     177 ..     586     614 ..     577     617 .. 0.73
   2 !   13.8   0.3   9.6e-06    0.0066      69     174 ..    1064    1158 ..    1047    1177 .. 0.73

  Alignments for each domain:
  == domain 1    score: -2.3 bits;  conditional E-value: 0.8
    TIGR03328 149 eespealgvLirgHGlyvwGkdleeakrh 177
                  ++ +e++ v +++H ++ w+   e ++  
  MMETSP1061-20121228|48829_1 586 KDGNEEMEVFVKEHNITNWATPNECVQFA 614
                  556788999**********9866655555 PP

  == domain 2    score: 13.8 bits;  conditional E-value: 9.6e-06
    TIGR03328   69 llhlaiyretpeagavlHtHsveatllsrltkknkelelegyEllkalegitkhedklkvPiieNtqdiaeLaeevekaleespealgvLirgHGlyvwGkdleea 174 
                    +h+a+yr++++++a++H H+ +++ +s l+         ++E    + g  + ++      ++N+ ++++L  +   a+ + +++  +L+++HG  ++Gk+l ea
  MMETSP1061-20121228|48829_1 1064 IIHEAVYRTRSDVKAIVHLHTPATVAISCLEMGF---VPIAQEAAPFI-GRVSRHPWHG---VSNDREEQALLGD---AV-KDEKVNTLLMENHGFCTFGKTLGEA 1158
                   59***********************999988764...33345666666.3333333333...4788888777543...34.3456778888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1209 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      129  (0.0314481); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         6  (0.0014627); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               6  [number of targets reported over threshold]
# CPU time: 0.56u 0.17s 00:00:00.73 Elapsed: 00:00:00.42
# Mc/sec: 3799.40
//
Query:       MMETSP1061-20121228|48835_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 351.97
//
Query:       MMETSP1061-20121228|48844_1  [L=653]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (653 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.33u 0.14s 00:00:00.47 Elapsed: 00:00:00.33
# Mc/sec: 2611.78
//
Query:       MMETSP1061-20121228|48851_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.18    7.2   3.5       0.19    7.1   2.4    1.0  1  TIGR00927 2A1904: K+-dependent Na+/Ca+ exchanger


Domain annotation for each model (and alignments):
>> TIGR00927  2A1904: K+-dependent Na+/Ca+ exchanger
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    7.1   2.4   4.6e-05      0.19     984    1008 ..      20      44 ..      13      55 .. 0.61

  Alignments for each domain:
  == domain 1    score: 7.1 bits;  conditional E-value: 4.6e-05
    TIGR00927  984 eeeeeeeeeeeeeeeeeeeneepls 1008
                   +++++e+e+e+e+e+e+e++ +pl 
  MMETSP1061-20121228|48851_1   20 DNDKDENENEDEDENENENESKPLV 44  
                   3334444445555555555566765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      143  (0.034861); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 337.89
//
Query:       MMETSP1061-20121228|48861_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.2e-06   24.1   0.0    2.2e-06   24.1   0.0    1.0  1  TIGR03997 mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
     0.0058   13.0   0.0     0.0059   13.0   0.0    1.0  1  TIGR03996 mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1


Domain annotation for each model (and alignments):
>> TIGR03997  mycofact_OYE_2: mycofactocin system FadH/OYE family oxidoreductase 2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.1   0.0   1.1e-09   2.2e-06     412     461 ..       3      52 ..       1      54 [] 0.93

  Alignments for each domain:
  == domain 1    score: 24.1 bits;  conditional E-value: 1.1e-09
    TIGR03997 412 eelGGqvklaaklpgreelaelvrdlaselkelgvevklGveadaelvla 461
                  +e+GGq ++a ++pg+ee+ e +r+ a++++ +gve+kl + ++a++++ 
  MMETSP1061-20121228|48861_1   3 SEIGGQFNVAKRIPGKEEFYETLRYFAKQVELTGVELKLDTLVSADMLES 52 
                  689**************************************999998875 PP

>> TIGR03996  mycofact_OYE_1: mycofactocin system FadH/OYE family oxidoreductase 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.0   0.0   2.9e-06    0.0059     404     454 ..       2      52 ..       1      54 [] 0.94

  Alignments for each domain:
  == domain 1    score: 13.0 bits;  conditional E-value: 2.9e-06
    TIGR03996 404 sarlGGmvriaargdGlsrlaaladwledecrrlGvelrlgaavdaeelda 454
                  ++++GG   +a r +G++++     +++++ + +Gvel+l++ v+a+ l++
  MMETSP1061-20121228|48861_1   2 ASEIGGQFNVAKRIPGKEEFYETLRYFAKQVELTGVELKLDTLVSADMLES 52 
                  5899*****************************************999876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 339.40
//
Query:       MMETSP1061-20121228|48867_1  [L=101]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (101 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       145  (0.0353486); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.16s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 634.80
//
Query:       MMETSP1061-20121228|48875_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        35  (0.00853242); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 622.23
//
Query:       MMETSP1061-20121228|48888_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        29  (0.00706972); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.25
# Mc/sec: 348.45
//
Query:       MMETSP1061-20121228|48896_1  [L=256]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    8.7e-63  209.8   0.1    1.1e-62  209.5   0.1    1.0  1  TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family


Domain annotation for each model (and alignments):
>> TIGR00044  TIGR00044: pyridoxal phosphate enzyme, YggS family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  209.5   0.1   2.6e-66   1.1e-62       3     229 .]      13     250 ..      12     250 .. 0.89

  Alignments for each domain:
  == domain 1    score: 209.5 bits;  conditional E-value: 2.6e-66
    TIGR00044   3 diatkleaiktkieaaavevnrnaekvkllaVsKtkpasaIqe.aydagqreFgEnyvQelveKikll...eelg.klewhfigqlqsnkdrlvvenfd.....lvhtiDslkiAkklneqreklkk....plnvllQinisdeesKSGlqreelleevaql.eelkhlklkGLmtIgaltdseeeqeesfrelkklfeklkqasklslidkLSmGmsdDfeeAIaaGatmvRiGtaiFgaR 229
                  di+ +le+++ k+eaa+   +r+ e+v+l+aVsKtkp s Iqe +y++gq+ FgEny Qel +K+k +   e+++ ++ whfig lqsnk++++v+n+      +v+t+ s+k+A+kl++   ++ +     l v +Q+n+s e+sKSG+  +e+ e+  ++ +++k+l lkG+mtIga++d e  + +  +  +k++e+l  +s     ++LSmGms+D+e AIa G+t vR+G++iFg+R
  MMETSP1061-20121228|48896_1  13 DIEGNLEHVRGKVEAACEAAGRSVESVRLVAVSKTKPFSYIQEaYYKCGQKVFGENYAQELEDKAKEMgadENYQqDISWHFIGGLQSNKAAKLVKNVVpfgklVVETVNSAKVANKLDNAMVTNFAddetLLDVFVQVNTSGEDSKSGVSVDEAVELCGHIvDNCKRLNLKGIMTIGAPGDVECLE-KLGICREKVAEALSMQSA---DLELSMGMSGDYETAIAKGSTNVRVGSTIFGQR 250
                  677899***********************************972579*******************99555566657*******************9853334479*************99877665566699****************************88*****************9866554.555566778888888887...479****************************98 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (256 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       206  (0.0502194); expected 82.0 (0.02)
Passed bias filter:                      119  (0.0290102); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.20u 0.12s 00:00:00.32 Elapsed: 00:00:00.22
# Mc/sec: 1535.87
//
Query:       MMETSP1061-20121228|48915_1  [L=70]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (70 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 486.28
//
Query:       MMETSP1061-20121228|48907_1  [L=345]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (345 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.23
# Mc/sec: 1979.84
//
Query:       MMETSP1061-20121228|48906_1  [L=624]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (624 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       122  (0.0297416); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.32u 0.15s 00:00:00.47 Elapsed: 00:00:00.32
# Mc/sec: 2573.79
//
Query:       MMETSP1061-20121228|48932_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0021   14.9   0.0     0.0021   14.9   0.0    1.0  1  TIGR03669 urea_ABC_arch: urea ABC transporter, substrate-binding protein


Domain annotation for each model (and alignments):
>> TIGR03669  urea_ABC_arch: urea ABC transporter, substrate-binding protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.9   0.0   5.2e-07    0.0021      39      79 ..      18      58 ..       1      59 [] 0.81

  Alignments for each domain:
  == domain 1    score: 14.9 bits;  conditional E-value: 5.2e-07
    TIGR03669 39 GrqielvdldpqsdneryqeltrrllerdkvdalwaGyssa 79
                    +el ++d qs  +   e+ ++l ++ ++d+++aGyss+
  MMETSP1061-20121228|48932_1 18 NFSLELRTYDDQSSLTETSEIGHKLATDASIDVMIAGYSST 58
                 3479***********************************96 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        56  (0.0136519); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 299.51
//
Query:       MMETSP1061-20121228|48934_1  [L=109]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (109 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.33
# Mc/sec: 435.96
//
Query:       MMETSP1061-20121228|48937_1  [L=60]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (60 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       204  (0.0497318); expected 82.0 (0.02)
Passed bias filter:                      177  (0.0431497); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.16s 00:00:00.26 Elapsed: 00:00:00.36
# Mc/sec: 219.98
//
Query:       MMETSP1061-20121228|48956_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 370.83
//
Query:       MMETSP1061-20121228|48961_1  [L=69]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (69 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        62  (0.0151146); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 350.28
//
Query:       MMETSP1061-20121228|48971_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        77  (0.0187713); expected 82.0 (0.02)
Passed bias filter:                       68  (0.0165773); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|48974_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 376.17
//
Query:       MMETSP1061-20121228|48978_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       111  (0.02706); expected 82.0 (0.02)
Passed bias filter:                       96  (0.0234032); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 541.85
//
Query:       MMETSP1061-20121228|48980_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.04   10.7   0.2      0.046   10.5   0.1    1.0  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB


Domain annotation for each model (and alignments):
>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.5   0.1   1.1e-05     0.046     122     158 ..       7      43 ..       3      48 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.5 bits;  conditional E-value: 1.1e-05
    TIGR02991 122 sqddaqeeverlvkerGlvmlppfdhadivaGqGtlg 158
                   q+  q+  erl k++ +  lpp   + + aG+G + 
  MMETSP1061-20121228|48980_1   7 KQQRQQQRRERLPKQQIIEQLPPPGTPVVAAGNGLVV 43 
                  57888999*************************9875 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       167  (0.0407118); expected 82.0 (0.02)
Passed bias filter:                      149  (0.0363237); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 307.97
//
Query:       MMETSP1061-20121228|48994_1  [L=78]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-10   39.3   0.0    1.1e-10   39.2   0.0    1.0  1  TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family


Domain annotation for each model (and alignments):
>> TIGR03840  TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.2   0.0   2.7e-14   1.1e-10      28      76 ..      11      61 ..       4      77 .. 0.81

  Alignments for each domain:
  == domain 1    score: 39.2 bits;  conditional E-value: 2.7e-14
    TIGR03840 28 selelaeksrvlvPLcGkslDllwLae..qghevvgveLselAveqffaen 76
                 +++el++++r++vPLcGk+ D+++La+  ++ +vvg++  ++A+e+f +e+
  MMETSP1061-20121228|48994_1 11 DATELKRRTRIFVPLCGKAIDMAHLASlsENVRVVGLDGIRVALEEFANEH 61
                 67899********************97225667899999999*****9997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (78 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.25
# Mc/sec: 411.81
//
Query:       MMETSP1061-20121228|48997_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 452.53
//
Query:       MMETSP1061-20121228|48982_1  [L=1033]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1033 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                      100  (0.0243784); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.28
# Mc/sec: 4701.54
//
Query:       MMETSP1061-20121228|49001_1  [L=307]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (307 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        75  (0.0182838); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.25
# Mc/sec: 1620.83
//
Query:       MMETSP1061-20121228|49014_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        39  (0.00950756); expected 82.0 (0.02)
Passed bias filter:                       38  (0.00926377); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.13s 00:00:00.23 Elapsed: 00:00:00.18
# Mc/sec: 388.63
//
Query:       MMETSP1061-20121228|49007_1  [L=252]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (252 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       88  (0.0214529); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.12s 00:00:00.28 Elapsed: 00:00:00.23
# Mc/sec: 1446.14
//
Query:       MMETSP1061-20121228|49018_1  [L=1395]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1395 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       236  (0.0575329); expected 82.0 (0.02)
Passed bias filter:                       57  (0.0138957); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.58u 0.16s 00:00:00.74 Elapsed: 00:00:00.45
# Mc/sec: 4091.66
//
Query:       MMETSP1061-20121228|49051_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        73  (0.0177962); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.17s 00:00:00.27 Elapsed: 00:00:00.24
# Mc/sec: 340.97
//
Query:       MMETSP1061-20121228|49059_1  [L=227]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (227 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       109  (0.0265724); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.23
# Mc/sec: 1302.68
//
Query:       MMETSP1061-20121228|49061_1  [L=427]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (427 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       176  (0.0429059); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.16s 00:00:00.41 Elapsed: 00:00:00.28
# Mc/sec: 2012.83
//
Query:       MMETSP1061-20121228|49070_1  [L=188]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (188 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       67  (0.0163335); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.21
# Mc/sec: 1181.62
//
Query:       MMETSP1061-20121228|49080_1  [L=115]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (115 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        63  (0.0153584); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 659.95
//
Query:       MMETSP1061-20121228|49083_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        32  (0.00780107); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.11s 00:00:00.19 Elapsed: 00:00:00.23
# Mc/sec: 321.36
//
Query:       MMETSP1061-20121228|49103_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.24
# Mc/sec: 291.48
//
Query:       MMETSP1061-20121228|49106_1  [L=215]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (215 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        57  (0.0138957); expected 82.0 (0.02)
Passed bias filter:                       53  (0.0129205); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.18
# Mc/sec: 1576.54
//
Query:       MMETSP1061-20121228|49112_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       49  (0.0119454); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 320.54
//
Query:       MMETSP1061-20121228|49105_1  [L=407]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.3e-16   56.9   0.1      1e-15   55.6   0.1    1.6  1  TIGR00678 holB: DNA polymerase III, delta' subunit
    1.4e-15   55.3   0.0    5.6e-12   43.4   0.0    2.2  2  TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau
    2.8e-06   24.8   0.4    3.3e-05   21.4   0.1    2.3  3  TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda
    0.00016   18.7   0.2     0.0014   15.6   0.0    2.1  2  TIGR00362 DnaA: chromosomal replication initiator protein DnaA
    0.00033   17.6   0.1       0.23    8.3   0.0    2.5  2  TIGR00635 ruvB: Holliday junction DNA helicase RuvB
    0.00038   17.0   0.0    0.00099   15.6   0.0    1.6  2  TIGR02902 spore_lonB: ATP-dependent protease LonB
     0.0012   15.2   0.1      0.016   11.6   0.0    2.0  2  TIGR02903 spore_lon_C: ATP-dependent protease, Lon family
  ------ inclusion threshold ------
      0.013   12.6   0.0      0.021   11.9   0.0    1.2  1  TIGR01128 holA: DNA polymerase III, delta subunit
      0.032   10.6   0.0      0.047   10.0   0.0    1.2  1  TIGR00602 rad24: checkpoint protein rad24


Domain annotation for each model (and alignments):
>> TIGR00678  holB: DNA polymerase III, delta' subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.6   0.1   2.3e-18     1e-15      15     171 ..      66     255 ..      53     278 .. 0.83

  Alignments for each domain:
  == domain 1    score: 55.6 bits;  conditional E-value: 2.3e-18
    TIGR00678  15 hAlLfaGpeGvGkealaealakallCe........keeeeeacgeckscrrieagnHPDllvlepegqk.......................ikvdqvr.......eleeelsktplesgrrvviiedaealneaaaNaLLKtLEEPpektlflLisespekllpTirSRcqrlslqplseeelaevleeqgkee 171
                  + l f+Gp+G Gk++ ++a+  al+          +++ +++ g+  + + i +  H  l   +  +++                       i                + ++ ++++ g +vv+++++++l ++a+ aL  t+E   + + ++L+++sp+kl++ +rSRc  +++++++e+e+a+vl++  k e
  MMETSP1061-20121228|49105_1  66 PHLFFYGPSGAGKRTRINAFLGALFGPaahklklnQRTFTTPTGRAVEIHMISSDYHIELSPGDAGNNDrfviqdvlkeiassknirssvgsI-----ArgdddtsGAAAAAAANTADTGIKVVVLNQVDRLSKQAQAALRRTMERYAATCRLILCCDSPSKLIAPLRSRCLGIRIAAPTEDEIAKVLKTVAKRE 255
                  4478*********************999999999999999***************99888877777666999999999986666655554441.....155555558888889999999*********************************************************************9975554 PP

>> TIGR02397  dnaX_nterm: DNA polymerase III, subunit gamma and tau
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    9.8   0.0    0.0002     0.092       6      51 ..      35      80 ..      31      94 .. 0.85
   2 !   43.4   0.0   1.2e-14   5.6e-12     117     263 ..     180     326 ..     168     395 .. 0.82

  Alignments for each domain:
  == domain 1    score: 9.8 bits;  conditional E-value: 0.0002
    TIGR02397  6 rkyrPktFedliGqehvvktLknaikknkiahayLfsGprGvGKTs 51
                  kyrP+++e+l  ++++ + L+   ++        f+Gp G GK +
  MMETSP1061-20121228|49105_1 35 DKYRPTELESLDYHDVISHRLNSLAQNPASLPHLFFYGPSGAGKRT 80
                 69*******************8777776666666789*******76 PP

  == domain 2    score: 43.4 bits;  conditional E-value: 1.2e-14
    TIGR02397 117 kykvYiiDEvhmLsksafnaLLKtlEePpehvvFilaTtelekipetilSRcqrfdfkkikeekiverlkkilkkekikveeeaLeliarkaeGslRDalslldqlislskgkitlekveellglvs.eekllelleailkkdleeal 263
                    kv ++  v  Lsk+a  aL +t+E+    +  il+   ++k+++ + SRc   ++   +e++i++ lk+++k+e++ + ++    +ar+++  lR al +l+ +++ s+g+    + ++ l +++ e ++ +l++ i+k++  ++l
  MMETSP1061-20121228|49105_1 180 GIKVVVLNQVDRLSKQAQAALRRTMERYAATCRLILCCDSPSKLIAPLRSRCLGIRIAAPTEDEIAKVLKTVAKRENVGLPNSVAINLARESNRNLRKALLMLEAASVQSSGSGAIPE-NQYLPTADwEIYIRQLATDITKEQSPQTL 326
                  56999*****************************************************************************99999*****************99998877433333.23333333033444555555555555554 PP

>> TIGR03420  DnaA_homol_Hda: DnaA regulatory inactivator Hda
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.7   0.0      0.15        68      27      57 ..      53      84 ..      41     111 .. 0.74
   2 !   21.4   0.1   7.3e-08   3.3e-05      83     208 ..     173     285 ..     163     295 .. 0.82
   3 ?   -3.1   0.0       2.2     1e+03     108     168 ..     306     367 ..     302     371 .. 0.58

  Alignments for each domain:
  == domain 1    score: 0.7 bits;  conditional E-value: 0.15
    TIGR03420 27 aalrel.aeakaerllylwGesgsGksHLLqA 57
                 ++l++l ++  +  +l+++G+sg Gk   ++A
  MMETSP1061-20121228|49105_1 53 HRLNSLaQNPASLPHLFFYGPSGAGKRTRINA 84
                 45666622344557899********9655555 PP

  == domain 2    score: 21.4 bits;  conditional E-value: 7.3e-08
    TIGR03420  83 evlegleqaelvalDdvealagereweealfdlynrlresgrkllvageaaPaelklrlpDLrtRlawglvfqlkplsdeeklaaLqeraaerGleLpdevaeyllkrlsrdlrsLlelLdaLdka 208
                  ++ ++++ +++v+l +v++l++++  ++al  ++ r  +   +l+++ + +P++l      Lr+R   +l ++++  +++e +++L++ a++  + Lp++va  l ++++r+lr+ l +L+    a
  MMETSP1061-20121228|49105_1 173 AANTADTGIKVVVLNQVDRLSKQA--QAALRRTMERYAA-TCRLILCCD-SPSKLIAP---LRSR---CLGIRIAAPTEDEIAKVLKTVAKRENVGLPNSVAINLARESNRNLRKALLMLE---AA 285
                  4556778899**************..9998888888776.567777765.67887666...9999...89*********************************999999999887555554...44 PP

  == domain 3    score: -3.1 bits;  conditional E-value: 2.2
    TIGR03420 108 weealfdlynrlresgr.kllvageaaPaelklrlpDLrtRlawglvfqlkplsdeeklaaL 168
                  we+ + +l   ++++++ + l+ ++++  el ++     t l++ +   l++l+d  kl+++
  MMETSP1061-20121228|49105_1 306 WEIYIRQLATDITKEQSpQTLMIAREKLYELLVNCIPASTILKSLTGELLNNLDDSVKLEVI 367
                  66666666666666655566666666555555555555555555566666777777776666 PP

>> TIGR00362  DnaA: chromosomal replication initiator protein DnaA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.12        55     129     150 ..      58      78 ..      51      87 .. 0.79
   2 !   15.6   0.0     3e-06    0.0014     230     307 ..     207     277 ..     183     292 .. 0.85

  Alignments for each domain:
  == domain 1    score: 0.4 bits;  conditional E-value: 0.12
    TIGR00362 129 vaenpgkaynPlfiyGgvGlGK 150
                  +a+np+ +   lf+yG +G GK
  MMETSP1061-20121228|49105_1  58 LAQNPA-SLPHLFFYGPSGAGK 78 
                  556655.45679*********9 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 3e-06
    TIGR00362 230 leknkqivltsDrapkelegleeRLkSRfewGLvvdieppdletrlaILkkkaeeeklelpeevlefiakkirsnvRe 307
                  + +  +++l++D + k ++ l    +SR    L + i +p+ ++  ++Lk  a++e++ lp++v+  +a++ ++n R+
  MMETSP1061-20121228|49105_1 207 YAATCRLILCCDSPSKLIAPL----RSR---CLGIRIAAPTEDEIAKVLKTVAKRENVGLPNSVAINLARESNRNLRK 277
                  55667899*****99999865....555...4889****************************************996 PP

>> TIGR00635  ruvB: Holliday junction DNA helicase RuvB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.6   0.0    0.0016      0.74      24      45 ..      59      80 ..      47      91 .. 0.83
   2 !    8.3   0.0    0.0005      0.23     138     202 ..     219     282 ..     188     291 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.6 bits;  conditional E-value: 0.0016
    TIGR00635 24 kkrkealdhvllyGPPGlGktt 45
                  ++ ++l h+++yGP G Gk t
  MMETSP1061-20121228|49105_1 59 AQNPASLPHLFFYGPSGAGKRT 80
                 5677899*************77 PP

  == domain 2    score: 8.3 bits;  conditional E-value: 0.0005
    TIGR00635 138 raGkltsPLrdrfgiverlefYseeeleeivkrsaklleleieeeaaleiarrsrgtprianrll 202
                     kl++PLr+r  +  r+   +e+e+++++k  ak  ++ + ++ a ++ar+s    r a  +l
  MMETSP1061-20121228|49105_1 219 SPSKLIAPLRSRC-LGIRIAAPTEDEIAKVLKTVAKRENVGLPNSVAINLARESNRNLRKALLML 282
                  56799*******4.677999**********************************99999887665 PP

>> TIGR02902  spore_lonB: ATP-dependent protease LonB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.1   0.0      0.53   2.4e+02      88     100 ..      67      79 ..      51      86 .. 0.83
   2 !   15.6   0.0   2.2e-06   0.00099     232     309 ..     209     286 ..     201     310 .. 0.85

  Alignments for each domain:
  == domain 1    score: -2.1 bits;  conditional E-value: 0.53
    TIGR02902  88 hviiyGppGvGkt 100
                  h+  yGp G Gk 
  MMETSP1061-20121228|49105_1  67 HLFFYGPSGAGKR 79 
                  999********96 PP

  == domain 2    score: 15.6 bits;  conditional E-value: 2.2e-06
    TIGR02902 232 adfrliGattrkpeeippalrsrcveiffrelekeeikeiakkaaekiglsleke.aleliakyasnGreavnlvqlaa 309
                  a  rli      p ++ + lrsrc+ i   + +++ei+++ k+ a++ ++ l ++ a++l  +  +n r+a+ +++ a+
  MMETSP1061-20121228|49105_1 209 ATCRLILC-CDSPSKLIAPLRSRCLGIRIAAPTEDEIAKVLKTVAKRENVGLPNSvAINLARESNRNLRKALLMLEAAS 286
                  55666654.4679999999*******************************99655388888899999999998887765 PP

>> TIGR02903  spore_lon_C: ATP-dependent protease, Lon family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    1.2   0.0     0.046        21     176     191 ..      66      81 ..      34      88 .. 0.66
   2 !   11.6   0.0   3.4e-05     0.016     332     393 ..     218     280 ..     201     293 .. 0.84

  Alignments for each domain:
  == domain 1    score: 1.2 bits;  conditional E-value: 0.046
    TIGR02903 176 qhiilyGppGvGktta 191
                   h+ +yGp G Gk t 
  MMETSP1061-20121228|49105_1  66 PHLFFYGPSGAGKRTR 81 
                  49***********985 PP

  == domain 2    score: 11.6 bits;  conditional E-value: 3.4e-05
    TIGR02903 332 rdpeeinpalrsrcaevffepltpedikeivlkaaeklnvklaegveeliaryti.eGrkavn 393
                   +p+++ + lrsrc  + +   t ++i+++++  a++ nv l + v   +ar +  + rka+ 
  MMETSP1061-20121228|49105_1 218 DSPSKLIAPLRSRCLGIRIAAPTEDEIAKVLKTVAKRENVGLPNSVAINLARESNrNLRKALL 280
                  58999999************************************9998777654314566665 PP

>> TIGR01128  holA: DNA polymerase III, delta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.9   0.0   4.7e-05     0.021      63     161 ..     182     277 ..     179     284 .. 0.91

  Alignments for each domain:
  == domain 1    score: 11.9 bits;  conditional E-value: 4.7e-05
    TIGR01128  63 rlvvvknpekktgakglkaLeeylenpppdtlllieapkldkrkkktkwlk.nakvvecktpkeeelpkwiqarlkelglkidneavqlLaelvegnlla 161
                  ++vv+++ + +  ++ ++aL + +e ++ ++ l+++++   +  k+ + l      +++ +p+e+e+ k++++ +k  ++ + n +   La+  + nl+ 
  MMETSP1061-20121228|49105_1 182 KVVVLNQVDRLS-KQAQAALRRTMERYAATCRLILCCD---SPSKLIAPLRsRCLGIRIAAPTEDEIAKVLKTVAKRENVGLPNSVAINLARESNRNLRK 277
                  789999999977.5667*******************98...777788899999999***************************************99985 PP

>> TIGR00602  rad24: checkpoint protein rad24
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.0   0.0    0.0001     0.047      69     128 ..      28      83 ..      18     105 .. 0.77

  Alignments for each domain:
  == domain 1    score: 10.0 bits;  conditional E-value: 0.0001
    TIGR00602  69 denelWveKykPetqeelAvHKkKieevee.wlkaqvLeskkkriLLitGPsGCgKsTvik 128
                  +   lWv+Ky+P  +e l  H    + ++  + +  +L++     L   GPsG gK T i 
  MMETSP1061-20121228|49105_1  28 SXLMLWVDKYRPTELESLDYHDVISHRLNSlAQNPASLPH-----LFFYGPSGAGKRTRIN 83 
                  56679****************7533333321123345555.....9************986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (407 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       228  (0.0555826); expected 82.0 (0.02)
Passed bias filter:                      180  (0.043881); expected 82.0 (0.02)
Passed Vit filter:                        29  (0.00706972); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.32u 0.16s 00:00:00.48 Elapsed: 00:00:00.36
# Mc/sec: 1492.21
//
Query:       MMETSP1061-20121228|49130_1  [L=265]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.5e-58  195.9   0.1    3.1e-58  195.6   0.1    1.0  1  TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase
    1.3e-34  117.5   0.4    1.5e-34  117.3   0.3    1.0  1  TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
    7.1e-09   32.3   0.1      1e-08   31.8   0.1    1.1  1  TIGR02063 RNase_R: ribonuclease R
    2.5e-07   27.5   0.1    4.2e-07   26.7   0.1    1.3  1  TIGR00717 rpsA: ribosomal protein S1
    7.4e-05   19.0   0.0     0.0001   18.6   0.0    1.1  1  TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
    7.9e-05   19.9   0.1    0.00014   19.1   0.1    1.4  1  TIGR02065 ECX1: exosome complex exonuclease 1
  ------ inclusion threshold ------
      0.025   11.6   0.4      0.041   10.9   0.1    1.5  2  TIGR01966 RNasePH: ribonuclease PH


Domain annotation for each model (and alignments):
>> TIGR03591  polynuc_phos: polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  195.6   0.1   5.4e-61   3.1e-58     451     684 ..       1     254 [.       1     259 [. 0.90

  Alignments for each domain:
  == domain 1    score: 195.6 bits;  conditional E-value: 5.4e-61
    TIGR03591 451 vpikapvaGiamGLikeede.kvavLsDilgdEDhlGDmDfKvaGtekgitalqmDiKiegiteeilekaleqakegRlhiLdkmek........vis..epreelseyaPrietikinkdkireviGkgGkvireiieetgakidieddGtvkiaaadkeaaekakklieeitaevevgkvyegkvvkiadfgafvellpgkdglvhiSelaee.rvek........vedvlkegdevkvkvleidk.kgrvkl 684
                  vp+ apvaG+++GL++++++ +  +L Di g+EDh+G mDfKvaGt++ +ta+q+D+K + i+  i+++al+ akegR  iL++m++        +is  +pr el++ aPr +++k ++ + ++++G+gG vir++ ++ ++++d++++G++ +++ d+ ++++ak+ + +++++vevg++yeg++++i dfg+++ell +k+gl+h+Sela + ++++        v d +++g++v v ++ +d  +g ++l
  MMETSP1061-20121228|49130_1   1 VPVLAPVAGVSVGLVQDSTNtTHKLLLDISGTEDHYGLMDFKVAGTAEEVTAMQLDVK-QPISLPIVTDALNLAKEGRNVILEEMKAqshrssdgAISnlSPRPELKPSAPRSSVVKFDPARKKDLLGPGGVVIRQMEDRFNVSLDLTQEGQCLLFGDDNGMVREAKAAVMDLVSDVEVGETYEGTIIEIRDFGVIIELLRNKEGLCHVSELAGKeEIRShrggtkglVMDRFRIGQQVDVVCTAVDPvQGTIRL 254
                  89**************998756789*********************************.78************************972222223345433589*************************************************************************************************************854367654444455588999*************987888887 PP

>> TIGR02696  pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  117.3   0.3   2.6e-37   1.5e-34     477     712 ..       1     247 [.       1     256 [. 0.82

  Alignments for each domain:
  == domain 1    score: 117.3 bits;  conditional E-value: 2.6e-37
    TIGR02696 477 vplkapvagiamglisdevdgetryvaltdilgaedalgdmdfkvagtrefvtalqldtkldgipaevlaealkqakdarlaildvlae........aid..sp.delsetaprviavkipvdkigevigpkgkvinsiqdetgaeisieddgtvyigaadgdsaeaaraainaianptlpevgerflgtvvkttafgafvsllpgkdgllhisei......rkladgkrvekvedvlsvgekikveiadidd 712
                  vp+ apvag+++gl++d+++  t +  l di+g+ed +g mdfkvagt e vta+qld k + i   ++++al+ ak+ r+ il+ +++        ai   sp  el + apr   vk    +  +++gp g vi +++d     + + ++g   +  +d    ++a+aa+  ++     evge + gt++    fg ++ ll  k+gl h+se+      r   +g     v d   +g+++ v  + +d 
  MMETSP1061-20121228|49130_1   1 VPVLAPVAGVSVGLVQDSTN--TTHKLLLDISGTEDHYGLMDFKVAGTAEEVTAMQLDVK-QPISLPIVTDALNLAKEGRNVILEEMKAqshrssdgAISnlSPrPELKPSAPRSSVVKFDPARKKDLLGPGGVVIRQMEDRFNVSLDLTQEGQCLLFGDDNGMVREAKAAVMDLVSD--VEVGETYEGTIIEIRDFGVIIELLRNKEGLCHVSELagkeeiRSHRGGT-KGLVMDRFRIGQQVDVVCTAVDP 247
                  8999************9988..5566799******************************9.579999*******************9862222222233322232488999*********999999***************************9888777777777788888777754..58********************************862211114444444.4678999999**99999999984 PP

>> TIGR02063  RNase_R: ribonuclease R
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.8   0.1   1.7e-11     1e-08     627     707 ..     177     254 ..     162     257 .. 0.81

  Alignments for each domain:
  == domain 1    score: 31.8 bits;  conditional E-value: 1.7e-11
    TIGR02063 627 kiGeefegvissvtsfGlFveLeentieGLvhissLkddyyefdeknlalvGertg...kvfrlGdevkvkvvevdkeekkidf 707
                   +Ge++eg i ++  fG+ +eL   + eGL h+s+L +      e+    +G  +g    +fr+G++v+v +++vd +++ i++
  MMETSP1061-20121228|49130_1 177 EVGETYEGTIIEIRDFGVIIELLR-NKEGLCHVSELAGK-----EEIRSHRGGTKGlvmDRFRIGQQVDVVCTAVDPVQGTIRL 254
                  69*********************9.89*********864.....33333333333311136*******************9987 PP

>> TIGR00717  rpsA: ribosomal protein S1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.7   0.1   7.2e-10   4.2e-07     269     340 ..     175     254 ..     168     260 .. 0.81

  Alignments for each domain:
  == domain 1    score: 26.7 bits;  conditional E-value: 7.2e-10
    TIGR00717 269 kfkvgkkikgkvtnladyGvfveieegiEGlvhvsElsWekknskPs........kvvkvGdevevkvleideerrrvsl 340
                    +vg+  +g + ++ d+Gv++e+  + EGl hvsEl+ ++++   +        + +++G++v+v+   +d+ ++ ++l
  MMETSP1061-20121228|49130_1 175 DVEVGETYEGTIIEIRDFGVIIELLRNKEGLCHVSELAGKEEIRSHRggtkglvmDRFRIGQQVDVVCTAVDPVQGTIRL 254
                  567899999****************************99988765432333333367899*****999999999998877 PP

>> TIGR00358  3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.6   0.0   1.7e-07    0.0001     574     653 ..     177     253 ..     163     256 .. 0.83

  Alignments for each domain:
  == domain 1    score: 18.6 bits;  conditional E-value: 1.7e-07
    TIGR00358 574 kvgeeFegvissvtrfGlfvrldengidglikistlen.dyyvfdkeklaligkkegkvykigDrvevkleevkleersii 653
                  +vge++eg i ++  fG+ ++l   + +gl ++s l   ++++  +  +  +g      ++ig +v+v  ++v+  +  i 
  MMETSP1061-20121228|49130_1 177 EVGETYEGTIIEIRDFGVIIELL-RNKEGLCHVSELAGkEEIRSHRGGT--KGLVM-DRFRIGQQVDVVCTAVDPVQGTIR 253
                  69*********************.778*********9867777655544..44444.56**************98887765 PP

>> TIGR02065  ECX1: exosome complex exonuclease 1
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   19.1   0.1   2.5e-07   0.00014     150     223 ..       6      85 ..       1      91 [. 0.78

  Alignments for each domain:
  == domain 1    score: 19.1 bits;  conditional E-value: 2.5e-07
    TIGR02065 150 lvvgvavGkvdg......kvvldlseeedkyGeadlPlailPklkeitllqldGd..ltedefkqaldlavkgikkvyeier 223
                   v+gv+vG v++      k++ld+s +ed+yG  d+ +a     +e+t +qld +  ++    ++al+la++g + + e  +
  MMETSP1061-20121228|49130_1   6 PVAGVSVGLVQDstntthKLLLDISGTEDHYGLMDFKVAGT--AEEVTAMQLDVKqpISLPIVTDALNLAKEGRNVILEEMK 85 
                  5899****998744444469***************999875..56777777776522677899***********99987655 PP

>> TIGR01966  RNasePH: ribonuclease PH
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.9   0.1   7.1e-05     0.041     153     231 ..       2      84 ..       1      89 [. 0.76
   2 ?   -3.7   0.0         2   1.2e+03     184     200 ..     174     190 ..     166     193 .. 0.71

  Alignments for each domain:
  == domain 1    score: 10.9 bits;  conditional E-value: 7.1e-05
    TIGR01966 153 plkeavaavsvGiveeea......vldldyeedsaaevdlnvvmtesgelvevqgtaeeepfsreelaelldlaekGikelielq 231
                  p+ + va vsvG+v++++      +ld++ +ed+   +d+ v  t++ e+  +q    ++p s   +++ l+la++G + ++e  
  MMETSP1061-20121228|49130_1   2 PVLAPVAGVSVGLVQDSTntthklLLDISGTEDHYGLMDFKVAGTAE-EVTAMQ-LDVKQPISLPIVTDALNLAKEGRNVILEEM 84 
                  88999*********9753222333899************99987765.334444.566889999999999999999988777654 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 2
    TIGR01966 184 vdlnvvmtesgelvevq 200
                  +d++v  t +g+++e++
  MMETSP1061-20121228|49130_1 174 SDVEVGETYEGTIIEIR 190
                  46777777888888876 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (265 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      126  (0.0307167); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.22u 0.17s 00:00:00.39 Elapsed: 00:00:00.27
# Mc/sec: 1295.45
//
Query:       MMETSP1061-20121228|49136_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.23
# Mc/sec: 855.06
//
Query:       MMETSP1061-20121228|49140_1  [L=55]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00049   17.5   0.0    0.00049   17.5   0.0    1.0  1  TIGR00079 pept_deformyl: peptide deformylase


Domain annotation for each model (and alignments):
>> TIGR00079  pept_deformyl: peptide deformylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.5   0.0   1.2e-07   0.00049      23      64 ..       7      48 ..       1      54 [. 0.68

  Alignments for each domain:
  == domain 1    score: 17.5 bits;  conditional E-value: 1.2e-07
    TIGR00079 23 ddkiekllddmietmiaeeGiGlAApQvgikkrllvvdlede 64
                 +++++ ++  + +t  +e  +GlAA+Q g++ r++++    +
  MMETSP1061-20121228|49140_1  7 QQQLRLAATILRDTARSEGAVGLAAQQCGVDARMVYLSSPSS 48
                 33444444444455555778***************9987665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (55 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.28
# Mc/sec: 250.32
//
Query:       MMETSP1061-20121228|49154_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       55  (0.0134081); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.27
# Mc/sec: 307.97
//
Query:       MMETSP1061-20121228|49143_1  [L=309]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (309 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       156  (0.0380302); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.11s 00:00:00.30 Elapsed: 00:00:00.70
# Mc/sec: 582.64
//
Query:       MMETSP1061-20121228|49155_1  [L=909]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.1e-83  278.1   0.0    1.6e-81  271.9   0.0    2.1  1  TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase
    2.3e-08   31.6   0.0    4.3e-08   30.7   0.0    1.4  1  TIGR03724 arch_bud32: Kae1-associated kinase Bud32


Domain annotation for each model (and alignments):
>> TIGR01982  UbiB: 2-polyprenylphenol 6-hydroxylase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  271.9   0.0   7.8e-85   1.6e-81      23     427 ..     182     614 ..     171     622 .. 0.85

  Alignments for each domain:
  == domain 1    score: 271.9 bits;  conditional E-value: 7.8e-85
    TIGR01982  23 ivelsllllakllakvskeearkeslgerlrlaleelGPifiKlGQvlstRaDllpeeiaeeLslLqdkvppfdlkaarkvieaelgkpveelFaefeekPlAaASiaQvhkAvlveg..keVavKvlRPgiekkieadikllellaklvekllpea...krlrptevvkefektlkeEldlrlEaanaselkenf..kndkklivPevyweltservltlewidgipvsdleklkeaGldlkalaenlvesflkqvlrdgfFHaDlHpGNilvakd.....gkiialDfGivgrlseeerrylaeillgflerdykrvaevhleagyvpsdtdlaeleqairavgepiv........gkplkei......s.......igklLaklfkitekfelevqpeLlLLqKtlltvEGvgrqldpdldlwkvaepvvkklik 427
                   v++ ++l++ +++  + ee++  +l+ + rl l++lGP+fiK GQ++s R+D+lp+ +++eL++Lqd+v pfd+k+a ++ie+elg p+ + F++++e+P+AaAS+aQv+ A+l +g  ++VavKv+RP +  ++++d+ +l+++a++ + l++++   +r +++ + +e +    +Eld++ Ea+n ++l++ +  k+ k+++vP+vy el+s+r+l+ ew++g ++sd  + +      ++++    e fl+q ++ gfFHaD+HpGN+++  +      +++++D+G++++++e +r +++  ++ + ++dy+ +++  +++  +p+dt+ a+    + +   p+v        ++ lk++      +       + ++ ++ + + ++   +++p +++L ++++t+EGv+ + +p+  +   a p++ + + 
  MMETSP1061-20121228|49155_1 182 AVPFLTKLTTLFIRDGKIEEKEIPALSRQARLDLQDLGPTFIKAGQMMSVRPDVLPQSTLDELTKLQDSVEPFDTKVAVEQIEKELGGPLGQFFTSISEEPVAAASLAQVYLATLNDGkdTKVAVKVQRPSVLGTVSKDLYVLRRAAEVFQGLVDRFapqQRTNYVALLNEWSIGFYTELDFNNEARNQQKLRNLLleKKVKGIKVPKVYEELCSRRILVSEWVEGKKLSDASNEE-----INRVTPYAQEAFLTQLFEVGFFHADPHPGNLMLLDEptedgEELALIDCGLMAEINEVDRDFMISAVIHLANKDYASLVDDFIQLKILPQDTNRAAVIPLMDKALSPYVkgggakkyEEELKKLynmedgNmqsqvggFQAMTQDALTVLNDIPFSIPPYFAILGRAIVTLEGVALTGNPNYGIILEAYPFIARKLL 614
                  566667777777777788888888889999999************************************************************************************97789**************************87766655411156888888888888899****************9873356789****************************88755.....569999**************************99988888889*************************************************988765555544444431111111145555543222221112222245677788999999***************************************987665 PP

>> TIGR03724  arch_bud32: Kae1-associated kinase Bud32
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   30.7   0.0   2.1e-11   4.3e-08      43     142 ..     368     475 ..     358     501 .. 0.78

  Alignments for each domain:
  == domain 1    score: 30.7 bits;  conditional E-value: 2.1e-11
    TIGR03724  43 RtrkEar.llseakkagvntPvvydvdpeekkivmeyiegkklkdlleekelellkevGe..lvgklHkagivhgDlttsNiivk......ddklyliDfGLgkkskev 142
                  R ++  r ll e k +g+++P vy+   ++ ++v e +egkkl+d+ +e+ +  ++  ++   + +l + g+ h D+++ N+++       +++l liD GL    +ev
  MMETSP1061-20121228|49155_1 368 RNQQKLRnLLLEKKVKGIKVPKVYEELCSRRILVSEWVEGKKLSDASNEEIN-RVTPYAQeaFLTQLFEVGFFHADPHPGNLMLLdeptedGEELALIDCGLMAEINEV 475
                  4444444156788889*********************************665.4444443116899****************994456666889*******97655544 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (909 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.42u 0.13s 00:00:00.55 Elapsed: 00:00:00.39
# Mc/sec: 3076.36
//
Query:       MMETSP1061-20121228|49179_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 389.37
//
Query:       MMETSP1061-20121228|49188_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        46  (0.011214); expected 82.0 (0.02)
Passed bias filter:                       39  (0.00950756); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|49201_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.14s 00:00:00.33 Elapsed: 00:00:00.32
# Mc/sec: 1328.14
//
Query:       MMETSP1061-20121228|49213_1  [L=357]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    2.8e-07   27.8   0.1      0.006   13.5   0.0    2.1  2  TIGR02352 thiamin_ThiO: glycine oxidase ThiO


Domain annotation for each model (and alignments):
>> TIGR02352  thiamin_ThiO: glycine oxidase ThiO
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.5   0.0   1.5e-06     0.006     120     226 ..     114     222 ..      97     232 .. 0.76
   2 !   12.2   0.0   3.8e-06     0.016     243     305 ..     261     322 ..     258     325 .. 0.94

  Alignments for each domain:
  == domain 1    score: 13.5 bits;  conditional E-value: 1.5e-06
    TIGR02352 120 lskealrelePelseeirgavflpedaqvdprellkaLvkaleklGveiieevevqeieargekvt..avktssekvqadqvvlaaGawakellp.lalrpvkgeilrle 226
                  +++ +l  l+ + + +  +a+f+++   vd +++l+ ++++l+ + +  +      ++e  + +++  ++  + +++++d +v ++G++a+el +  +l   +g +l+++
  MMETSP1061-20121228|49213_1 114 IHQLRLPSLQQAQAAGYNHAWFFQTP-VVDCPKMLEHFLEELRGSSAVTSAGDVDVDVETGVYYQSeqELFEEAKNFNCDAIVNCTGMGASELCGdSQLTGARGVLLKYT 222
                  45556666777777888999999875.59*************9988888887777788877655541145566779******************9878899999999876 PP

  == domain 2    score: 12.2 bits;  conditional E-value: 3.8e-06
    TIGR02352 243 qrqvYivPredgrlvvGAtseesgfdttvtlegvkeLledaievlPalkeaelletwaGlRPa 305
                  +++ Y++ r d+ +v+G t  + + +  v+++  ++Lle a  +    + +e  e w+G+RP 
  MMETSP1061-20121228|49213_1 261 EYPSYMIVRGDE-IVIGGTCLKGDTEPRVRPQERTRLLETARLLGIDTNACEPKEEWVGFRPY 322
                  567899999998.*************************************************6 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (357 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.18u 0.15s 00:00:00.32 Elapsed: 00:00:00.42
# Mc/sec: 1121.91
//
Query:       MMETSP1061-20121228|49220_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.8e-13   47.4  10.9    6.6e-13   46.7   7.6    1.4  1  TIGR00803 nst: UDP-galactose transporter
  ------ inclusion threshold ------
       0.36    8.0  19.4       0.85    6.8  13.5    1.6  1  TIGR00950 2A78: carboxylate/amino acid/amine transporter


Domain annotation for each model (and alignments):
>> TIGR00803  nst: UDP-galactose transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   46.7   7.6   3.2e-16   6.6e-13       2     222 .]     218     443 ..     217     443 .. 0.89

  Alignments for each domain:
  == domain 1    score: 46.7 bits;  conditional E-value: 3.2e-16
    TIGR00803   2 lsVPiliilkqnnlvlvalgnllaagkqvT.qlkilstalmtlgslvaslgdkqwfslkllklgvaivq...lvqssa..ktlsegnlvvglsavlsallssglagvyfekilkdkd.ts.fyvrnlqlplfgllvtfvvlllsdgslisnkgffigyttavwivvllnvvgglcvglvvkyadnttksivlalsiilslllsvrlfdaklsltfalgvilvflatllY 222
                  + V +li+   n l ++ l n+ a  +    q kil+ta ++  +l ++++  +w +l +l+lgv   +   + ++s+     ++gn+v+g++avl+ +  sg+a++yfek++k    ++ ++ rn ql l ++ v    +l  +g+   + gf  g     +++  l + ggl+v+l +ky d+++k +++  +i+l  ll   l + +l+ + ++  ++v++a+  Y
  MMETSP1061-20121228|49220_1 218 MFVLALIYGAMNILSFISLRNISAGIFTIFaQCKILTTATFSTIMLKRQYSWTKWRALIALMLGVLLFSepiWGNKSDlsTSTKNGNVVLGTAAVLIEITLSGFASIYFEKVIKTDPlQLgIWERNFQLALGSVPV---YILFIVGNGGGTAGFLGGWSWLAFLLAGLGAAGGLLVALSIKYGDSILKTLATTGAIVLTGLLDHFLLGGPLTPSMMIAGVQVIIAICNY 443
                  5567889999999***************999**********************************998855577888786777888*************************99976515599*******9988877...5556667777778877899999999999************************************99999999999999999999998765 PP

>> TIGR00950  2A78: carboxylate/amino acid/amine transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    6.8  13.5   0.00042      0.85      48     262 ..     216     439 ..     204     441 .. 0.73

  Alignments for each domain:
  == domain 1    score: 6.8 bits;  conditional E-value: 0.00042
    TIGR00950  48 rllllgalqlgvfyvllflavkkltvaiaalllvlaPlyvtllsdllekervrkkkllAavlalaGivlllsdg............nlsislaGlllgllsgisfAlgtvlakrlvkkeglellqftgfvvlliGallllpfalllgpnlqalpatslqwlallyLgligtllayflynkglkevdasaasilall.eplvallLgllilgetlslvqliggalilaa 262
                  r +++ al  g+++ l f++  + +++i +++     l ++++s ++ k++ ++ k+ A+++ ++G vll+s+             +  + + G  ++l+      + +++  +++k+ +l+l    +  +l++G++ + +++ +  +  +a   ++ +wla+l  gl +  ++  l +  +k+   s++ +la+   ++   lL  ++lg  l+++ +i+g+ ++ a
  MMETSP1061-20121228|49220_1 216 RKMFVLALIYGAMNILSFISLRNISAGIFTIFAQCKILTTATFSTIMLKRQYSWTKWRALIALMLG-VLLFSEPiwgnksdlststKNGNVVLGTAAVLIEITLSGFASIYFEKVIKTDPLQLGIWERNFQLALGSVPVYILFIVGNGGGTAGFLGGWSWLAFLLAGLGA--AGGLLVALSIKYG-DSILKTLATTgAIVLTGLLDHFLLGGPLTPSMMIAGVQVIIA 439
                  67999*************************************************************.9999887777766552222222233333333333334567788999999999999988888889999999999998888888877666666664444333322..2233334444444.445555554426777888888888888888888888888776 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       148  (0.03608); expected 82.0 (0.02)
Passed bias filter:                       75  (0.0182838); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.26u 0.13s 00:00:00.39 Elapsed: 00:00:00.35
# Mc/sec: 1919.50
//
Query:       MMETSP1061-20121228|49224_1  [L=173]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (173 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       103  (0.0251097); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.14s 00:00:00.28 Elapsed: 00:00:00.28
# Mc/sec: 787.38
//
Query:       MMETSP1061-20121228|49231_1  [L=872]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    9.5e-29   98.5   0.0    1.8e-28   97.6   0.0    1.5  1  TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
     0.0029   14.7   0.0     0.0079   13.3   0.0    1.7  2  TIGR00552 nadE: NAD+ synthetase
     0.0099   13.0   0.0      0.018   12.2   0.0    1.4  1  TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain


Domain annotation for each model (and alignments):
>> TIGR02432  lysidine_TilS_N: tRNA(Ile)-lysidine synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.6   0.0   1.3e-31   1.8e-28       2     189 .]     391     595 ..     390     595 .. 0.92

  Alignments for each domain:
  == domain 1    score: 97.6 bits;  conditional E-value: 1.3e-31
    TIGR02432   2 llvAvSGGvDSmaLlkllkelkeklkik...liaahvdHklreeskeeaeeveelckk...lkiklvvkkvevkakakekkknleeaaRelRYkaleelakklk..............aeviltAHhadDqiEtillrllrgsglkglsglkeirelekkiqivRPLlkiskkeieeylkeeklkiieDetNkdekytRnrireellp 189
                  ++v++SGGvDSm++ ++l +lk+ +  +   + a+h+d+  r+es +ea++v ++c++   + i++ + ++    +    +++ e  aRe+RY+   +++ + k              +  ++++Hh+ D  E++l +  +g g+  lsg+++++++ ++i+++RPLl+++k+ + +y+++ ++++ +D t +    tR ++r++llp
  MMETSP1061-20121228|49231_1 391 VIVSLSGGVDSMVIASVLAHLKRSCGYDhltILAVHIDYANRPESGAEADYVRRYCEEqvhNAIEFCCRRIGEVTRGITARDDYERIAREIRYDSYRDAVARAKdvmglkskeerrknIVGVMLGHHRGDLRENVLSNAHKGCGPLDLSGMTAVSKN-DGITVYRPLLPLEKSFVFDYAHKFGVPYYKDTTPH--WSTRGKLRNKLLP 595
                  79**********************998899999***********************9722257899999999999999999****************9999988999********9998899*********************************99.6*******************************965..4568888888876 PP

>> TIGR00552  nadE: NAD+ synthetase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.3   0.0   5.8e-06    0.0079      18      44 ..     384     410 ..     377     439 .. 0.76
   2 ?   -3.7   0.0      0.86   1.2e+03     154     177 ..     551     574 ..     548     575 .. 0.86

  Alignments for each domain:
  == domain 1    score: 13.3 bits;  conditional E-value: 5.8e-06
    TIGR00552  18 kksgakgvvlGlSGGiDSavvaalave 44 
                  k+s+   v++ lSGG+DS+v+a++  +
  MMETSP1061-20121228|49231_1 384 KSSQKAAVIVSLSGGVDSMVIASVLAH 410
                  34466789************9987554 PP

  == domain 2    score: -3.7 bits;  conditional E-value: 0.86
    TIGR00552 154 cdlaplaellKtqvkeLakelnvP 177
                  +  +pl  l K+ v++ a++++vP
  MMETSP1061-20121228|49231_1 551 TVYRPLLPLEKSFVFDYAHKFGVP 574
                  55689999**************99 PP

>> TIGR00884  guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.2   0.0   1.3e-05     0.018       8      45 ..     379     421 ..     375     457 .. 0.61

  Alignments for each domain:
  == domain 1    score: 12.2 bits;  conditional E-value: 1.3e-05
    TIGR00884   8 eeirekvgd.akviialsGGvdssvaavll.h..kaig.drlt 45 
                  ++i +k ++ a vi++lsGGvds v+a +l h  ++ g d+lt
  MMETSP1061-20121228|49231_1 379 QQISTKSSQkAAVIVSLSGGVDSMVIASVLaHlkRSCGyDHLT 421
                  556555544267999********99875531322555535554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (872 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                        16  (0.00390054); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.42u 0.14s 00:00:00.56 Elapsed: 00:00:00.44
# Mc/sec: 2615.78
//
Query:       MMETSP1061-20121228|49252_1  [L=90]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00012   19.3   0.6    0.00017   18.8   0.4    1.2  1  TIGR01746 Thioester-redct: thioester reductase domain
    0.00021   16.5   0.0    0.00021   16.5   0.0    1.0  1  TIGR03443 alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
     0.0026   14.5   0.2     0.0034   14.1   0.1    1.2  1  TIGR03466 HpnA: hopanoid-associated sugar epimerase
  ------ inclusion threshold ------
      0.046   11.1   0.2      0.081   10.3   0.2    1.4  1  TIGR01777 yfcH: TIGR01777 family protein


Domain annotation for each model (and alignments):
>> TIGR01746  Thioester-redct: thioester reductase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   18.8   0.4   1.6e-07   0.00017       1      20 [.      69      88 ..      69      90 .] 0.94

  Alignments for each domain:
  == domain 1    score: 18.8 bits;  conditional E-value: 1.6e-07
    TIGR01746  1 tvlLTGAtGfLGaylleeLl 20
                 tv+LTGAtGf+G  ll++L+
  MMETSP1061-20121228|49252_1 69 TVILTGATGFVGSALLRDLI 88
                 69****************97 PP

>> TIGR03443  alpha_am_amid: L-aminoadipate-semialdehyde dehydrogenase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.5   0.0   2.1e-07   0.00021     959     993 ..      54      88 ..       7      90 .] 0.67

  Alignments for each domain:
  == domain 1    score: 16.5 bits;  conditional E-value: 2.1e-07
    TIGR03443 959 ksyaskkelaaeeevtvfltGatGflGsfilrdll 993
                  +  as+k  +++  +tv+ltGatGf+Gs +lrdl+
  MMETSP1061-20121228|49252_1  54 RILASSKIDEVNYRRTVILTGATGFVGSALLRDLI 88 
                  345666667778899******************97 PP

>> TIGR03466  HpnA: hopanoid-associated sugar epimerase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.1   0.1   3.3e-06    0.0034       2      20 ..      69      87 ..      68      90 .] 0.90

  Alignments for each domain:
  == domain 1    score: 14.1 bits;  conditional E-value: 3.3e-06
    TIGR03466  2 kvlvtGatGFvGsavvrll 20
                 +v++tGatGFvGsa++r l
  MMETSP1061-20121228|49252_1 69 TVILTGATGFVGSALLRDL 87
                 6899************988 PP

>> TIGR01777  yfcH: TIGR01777 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.3   0.2   7.9e-05     0.081       1      18 [.      70      87 ..      70      89 .. 0.90

  Alignments for each domain:
  == domain 1    score: 10.3 bits;  conditional E-value: 7.9e-05
    TIGR01777  1 vlitGgtGliGralveel 18
                 v++tG+tG++G+al + l
  MMETSP1061-20121228|49252_1 70 VILTGATGFVGSALLRDL 87
                 689***********9987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (90 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         4  (0.000975134); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               4  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.20
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|49268_1  [L=58]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (58 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        41  (0.00999512); expected 82.0 (0.02)
Passed bias filter:                       41  (0.00999512); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.18
# Mc/sec: 425.30
//
Query:       MMETSP1061-20121228|49283_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       70  (0.0170648); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 263.98
//
Query:       MMETSP1061-20121228|49287_1  [L=56]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (56 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        51  (0.012433); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 335.97
//
Query:       MMETSP1061-20121228|49290_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1061-20121228|49276_1  [L=1099]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1099 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        79  (0.0192589); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.45u 0.15s 00:00:00.60 Elapsed: 00:00:00.43
# Mc/sec: 3373.40
//
Query:       MMETSP1061-20121228|49295_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-11   40.8   0.0    3.8e-11   40.7   0.0    1.0  1  TIGR00002 S16: ribosomal protein S16


Domain annotation for each model (and alignments):
>> TIGR00002  S16: ribosomal protein S16
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   0.0   9.2e-15   3.8e-11      35      76 ..       1      44 [.       1      46 [. 0.92

  Alignments for each domain:
  == domain 1    score: 40.7 bits;  conditional E-value: 9.2e-15
    TIGR00002 35 lGtynPvkkee..evkldverikewlkkGaqptetvkklLkkag 76
                 lG++nP+++ +  ++++d +ri++w+++Gaq++++v k++k a+
  MMETSP1061-20121228|49295_1  1 LGFFNPIANGQeeKIRVDLDRIEHWVGVGAQLSDRVAKIIKDAQ 44
                 8******9986569**************************9986 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       102  (0.0248659); expected 82.0 (0.02)
Passed bias filter:                       94  (0.0229157); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.20
# Mc/sec: 310.17
//
Query:       MMETSP1061-20121228|49309_1  [L=79]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (79 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 434.46
//
Query:       MMETSP1061-20121228|49319_1  [L=47]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (47 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        25  (0.00609459); expected 82.0 (0.02)
Passed bias filter:                       25  (0.00609459); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.20
# Mc/sec: 310.17
//
Query:       MMETSP1061-20121228|49323_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
        3.6    4.4  10.2        3.9    4.3   7.1    1.0  1  TIGR01628 PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family


Domain annotation for each model (and alignments):
>> TIGR01628  PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.3   7.1   0.00096       3.9     416     493 ..       2      78 ..       1      91 [. 0.71

  Alignments for each domain:
  == domain 1    score: 4.3 bits;  conditional E-value: 0.00096
    TIGR01628 416 qqlasqplnfkinqmmlstqnpskpeapnalaqlaqqrlqaqgrrnlnnr.nrnvlgnmnkkqqnaaskanqanvkaqp 493
                  qq ++q+ n+     +  ++n+++  +pn++ +++ +   + ++rn  n+ ++ v+++m ++q++++++ ++a+++ + 
  MMETSP1061-20121228|49323_1   2 QQQQQQQHNYGQYPSRSLPSNQNNAVTPNSIDRNGRED--TTNNRNSSNGrEKGVRAAMVRRQKEKMKRLQRASCNSTT 78 
                  56666777777666666666666666788888888875..666777777768899999999999999888887776655 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       132  (0.0321794); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 653.35
//
Query:       MMETSP1061-20121228|49334_1  [L=93]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (93 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 533.70
//
Query:       MMETSP1061-20121228|49337_1  [L=34]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (34 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 195.11
//
Query:       MMETSP1061-20121228|49345_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       61  (0.0148708); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 516.96
//
Query:       MMETSP1061-20121228|49347_1  [L=353]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.4e-57  191.7   2.1    4.4e-57  191.3   1.4    1.1  1  TIGR00116 tsf: translation elongation factor Ts


Domain annotation for each model (and alignments):
>> TIGR00116  tsf: translation elongation factor Ts
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.3   1.4   1.1e-60   4.4e-57       6     271 ..      65     352 ..      62     353 .] 0.87

  Alignments for each domain:
  == domain 1    score: 191.3 bits;  conditional E-value: 1.1e-60
    TIGR00116   6 aqlvkeLRektdAgmmdCkkALveangDlekAidllRekGiakaakka.drvAaeGvvllkvdnd..kavlveinsetDFvAknegfkelanklle....elkankittveelkkselenkeveeklaslvakigEnilvrriavleaksseviksYlHa....nariGv...lveikgk..see......elakdlAmHvAAvkPqfldqddvsaevvkkereiekdqaelegkPekilekiveGrlkkflaeisLleqkfvmdd.kktvkqllkeknakvtefvrfe 271
                  ++ vkeLR   +A + dCkkAL e++gD+ek +d+lR++G+aka kk+ dr A eG v+  v +d  +a +v+i+setDF  k++ f++la +++          k +   ++   e e k+v+  l  +v  i En+ v++ + l++ ++  + +Y+H+     +  G    +ve+ g+  s +      e +k+lAmH+ A kP +l+ + + +evv+ke+ + ++q   + kP +++eki++Gr++kf  ei+L eq++++++ + +v++ lkek + v +f  f 
  MMETSP1061-20121228|49347_1  65 MSMVKELRSVSGAPIVDCKKALAENDGDMEKSLDWLRQHGAAKASKKLgDREAEEGLVACAVSEDgkSASIVKISSETDFAGKSDAFVDLACHVAGatlsSSSSGKLDPQSTVLGLEFESKSVQTALEDAVVAIRENLGVKQAVKLTTGDDGLLVAYVHGkangSSNAGLaaaVVEVSGEgvS-KnpeaanEAGKKLAMHIVAAKPAYLSAECIPEEVVEKEKAVLESQIADSNKPPEVVEKIINGRIRKFYSEICLDEQEHMVEEgNPKVSKALKEKGLVVKSFEMFS 352
                  578********************************************9679*******9988766669**********************9888763221455566677889999********************************************833222345542225566555433.15788889*********************************************************************988873679*************998886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (353 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       74  (0.01804); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.21u 0.13s 00:00:00.34 Elapsed: 00:00:00.27
# Mc/sec: 1725.64
//
Query:       MMETSP1061-20121228|49373_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       50  (0.0121892); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 485.96
//
Query:       MMETSP1061-20121228|49376_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00041   17.8   0.1    0.00073   17.0   0.0    1.4  1  TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain


Domain annotation for each model (and alignments):
>> TIGR02098  MJ0042_CXXC: MJ0042 family finger-like domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.0   0.0   1.8e-07   0.00073       3      25 ..      59      81 ..      57      82 .. 0.92

  Alignments for each domain:
  == domain 1    score: 17.0 bits;  conditional E-value: 1.8e-07
    TIGR02098  3 iqCPnCktsyrVddsqlginggk 25
                 iqC +C+++y V +  +g + +k
  MMETSP1061-20121228|49376_1 59 IQCASCHSWYLVASKCIGFDERK 81
                 9*****************99886 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.26
# Mc/sec: 467.04
//
Query:       MMETSP1061-20121228|49372_1  [L=504]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (504 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       212  (0.0516821); expected 82.0 (0.02)
Passed bias filter:                      121  (0.0294978); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.15s 00:00:00.42 Elapsed: 00:00:00.32
# Mc/sec: 2078.83
//
Query:       MMETSP1061-20121228|49380_1  [L=192]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (192 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.24
# Mc/sec: 1055.91
//
Query:       MMETSP1061-20121228|49384_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.20
# Mc/sec: 494.96
//
Query:       MMETSP1061-20121228|49392_1  [L=44]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (44 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       91  (0.0221843); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.16s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 290.38
//
Query:       MMETSP1061-20121228|49400_1  [L=320]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (320 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        81  (0.0197465); expected 82.0 (0.02)
Passed bias filter:                       71  (0.0173086); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.21
# Mc/sec: 2011.26
//
Query:       MMETSP1061-20121228|49411_1  [L=64]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    0.00079   15.7   0.0    0.00084   15.6   0.0    1.0  1  TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type
  ------ inclusion threshold ------
      0.012   13.1   0.0      0.012   13.1   0.0    1.0  1  TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type


Domain annotation for each model (and alignments):
>> TIGR00705  SppA_67K: signal peptide peptidase SppA, 67K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.6   0.0   4.1e-07   0.00084     450     496 ..      17      63 ..      10      64 .] 0.92

  Alignments for each domain:
  == domain 1    score: 15.6 bits;  conditional E-value: 4.1e-07
    TIGR00705 450 llrplteeeqaimqlsveagYerFlevvskaRnlskeqvdkvAqGrv 496
                  ll p +ee +   q  ++++ + F e v++aR + ++ +d++ +G+v
  MMETSP1061-20121228|49411_1  17 LLGPVSEEGKRTTQAMIDQTHRAFKEHVANARPVLRDTIDEIGNGNV 63 
                  67788999999**********************************98 PP

>> TIGR00706  SppA_dom: signal peptide peptidase SppA, 36K type
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   13.1   0.0   5.7e-06     0.012     135     178 ..      20      63 ..       4      64 .] 0.86

  Alignments for each domain:
  == domain 1    score: 13.1 bits;  conditional E-value: 5.7e-06
    TIGR00706 135 elteeekeilqslvnesyeqFvevvakgRnlsveevkklAdGrv 178
                   + ee k+  q+++++++  F e va++R +  + + ++ +G v
  MMETSP1061-20121228|49411_1  20 PVSEEGKRTTQAMIDQTHRAFKEHVANARPVLRDTIDEIGNGNV 63 
                  567899********************************999987 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (64 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       108  (0.0263286); expected 82.0 (0.02)
Passed bias filter:                      103  (0.0251097); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.09u 0.18s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 383.97
//
Query:       MMETSP1061-20121228|49414_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       59  (0.0143832); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 350.06
//
Query:       MMETSP1061-20121228|49430_1  [L=803]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0004   17.8   0.0    0.00088   16.7   0.0    1.5  1  TIGR02705 nudix_YtkD: nucleoside triphosphatase YtkD
     0.0059   14.5   0.0       0.02   12.8   0.0    1.8  2  TIGR00586 mutt: mutator mutT protein


Domain annotation for each model (and alignments):
>> TIGR02705  nudix_YtkD: nucleoside triphosphatase YtkD
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.7   0.0   4.3e-07   0.00088      47      73 ..     288     314 ..     264     318 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.7 bits;  conditional E-value: 4.3e-07
    TIGR02705  47 lefPGGkveegetskeaaiRevleetG 73 
                    fP Gk ++ e   +aa+Re +eetG
  MMETSP1061-20121228|49430_1 288 WTFPAGKINQNEIGVDAAARETYEETG 314
                  57************************9 PP

>> TIGR00586  mutt: mutator mutT protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   12.8   0.0   9.7e-06      0.02      31      66 ..     285     320 ..     272     333 .. 0.91
   2 ?   -2.4   0.0      0.49     1e+03      98     116 ..     379     398 ..     351     407 .. 0.83

  Alignments for each domain:
  == domain 1    score: 12.8 bits;  conditional E-value: 9.7e-06
    TIGR00586  31 anklefPGGkieaGetpeqavvrelqeevgitaqhf 66 
                  +n + fP Gki+  e   +a  re  ee g  ++  
  MMETSP1061-20121228|49430_1 285 SNVWTFPAGKINQNEIGVDAAARETYEETGFDPHCN 320
                  588***************************988755 PP

  == domain 2    score: -2.4 bits;  conditional E-value: 0.49
    TIGR00586  98 kegeegewvavreLdeer.f 116
                  ke +++ew+ +r+++e++ f
  MMETSP1061-20121228|49430_1 379 KEVDSIEWIDLRDIKEYKsF 398
                  568899*******9998744 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (803 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       178  (0.0433935); expected 82.0 (0.02)
Passed bias filter:                       84  (0.0204778); expected 82.0 (0.02)
Passed Vit filter:                        11  (0.00268162); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.38u 0.15s 00:00:00.53 Elapsed: 00:00:00.37
# Mc/sec: 2864.52
//
Query:       MMETSP1061-20121228|49446_1  [L=110]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (110 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        50  (0.0121892); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.14s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 691.37
//
Query:       MMETSP1061-20121228|49451_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        13  (0.00316919); expected 82.0 (0.02)
Passed bias filter:                       13  (0.00316919); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 373.97
//
Query:       MMETSP1061-20121228|49452_1  [L=270]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (270 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        60  (0.014627); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.15s 00:00:00.32 Elapsed: 00:00:00.23
# Mc/sec: 1549.44
//
Query:       MMETSP1061-20121228|49459_1  [L=509]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (509 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        95  (0.0231594); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.24u 0.15s 00:00:00.39 Elapsed: 00:00:00.33
# Mc/sec: 2035.83
//
Query:       MMETSP1061-20121228|49490_1  [L=466]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (466 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        97  (0.023647); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.33
# Mc/sec: 1863.85
//
Query:       MMETSP1061-20121228|49503_1  [L=141]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    5.3e-41  138.7   0.0    6.4e-41  138.5   0.0    1.1  1  TIGR01136 cysKM: cysteine synthases
    3.5e-38  129.4   0.0    4.2e-38  129.1   0.0    1.1  1  TIGR01139 cysK: cysteine synthase A
    6.2e-36  122.2   0.0    7.3e-36  122.0   0.0    1.1  1  TIGR01138 cysM: cysteine synthase B
    1.5e-32  110.7   0.0    1.8e-32  110.5   0.0    1.0  1  TIGR01137 cysta_beta: cystathionine beta-synthase
    6.6e-29   98.7   0.0    8.3e-29   98.4   0.0    1.1  1  TIGR03945 PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
    7.5e-11   39.4   0.0    9.8e-11   39.0   0.0    1.1  1  TIGR02991 ectoine_eutB: ectoine utilization protein EutB
    3.7e-07   27.5   0.0    4.5e-07   27.2   0.0    1.1  1  TIGR00260 thrC: threonine synthase
    0.00016   18.2   0.0     0.0002   17.9   0.0    1.0  1  TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
    0.00027   17.9   0.0    0.00028   17.9   0.0    1.1  1  TIGR00263 trpB: tryptophan synthase, beta subunit
    0.00049   17.0   0.0     0.0012   15.8   0.0    1.5  2  TIGR01127 ilvA_1Cterm: threonine dehydratase
    0.00096   15.8   0.0     0.0012   15.5   0.0    1.0  1  TIGR02079 THD1: threonine dehydratase
  ------ inclusion threshold ------
      0.014   12.0   0.0      0.019   11.6   0.0    1.1  1  TIGR03844 cysteate_syn: cysteate synthase


Domain annotation for each model (and alignments):
>> TIGR01136  cysKM: cysteine synthases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.5   0.0   1.9e-43   6.4e-41       1      97 [.      43     140 ..      43     141 .] 0.98

  Alignments for each domain:
  == domain 1    score: 138.5 bits;  conditional E-value: 1.9e-43
    TIGR01136   1 ieeliGntPlvrln.lseelkaevlvKlEsrnPsgSvKdRialsmildAekrgllkkgktiieatSGNtGiaLAmvaaakgyklilvmpetmslERrk 97 
                  i+++iG+tP+vrl+ +s++  ++v+vKlEs nP+gSvKdR al +i+ Aek+g+lk+g+t++eatSGNtGi+LAmv+a++gy l++vm e +s+ERrk
  MMETSP1061-20121228|49503_1  43 ISDTIGRTPVVRLQhMSPREGVDVFVKLESENPGGSVKDRLALGVIEWAEKHGELKPGQTVVEATSGNTGIGLAMVCASRGYPLVCVMSEAFSIERRK 140
                  5799**********9**********************************************************************************8 PP

>> TIGR01139  cysK: cysteine synthase A
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  129.1   0.0   1.2e-40   4.2e-38       1      97 [.      43     140 ..      43     141 .] 0.97

  Alignments for each domain:
  == domain 1    score: 129.1 bits;  conditional E-value: 1.2e-40
    TIGR01139   1 iseliGntPlvrLn.laeeakaevlvkleslnPsssvkdrialamiedaekegllkkgktiveatsGntGialamvaaargykliltmpetmslerrk 97 
                  is++iG+tP+vrL+ +     ++v+vkles nP++svkdr+al +ie aek+g lk+g+t+veatsGntGi+lamv+a+rgy l+ +m e++s+errk
  MMETSP1061-20121228|49503_1  43 ISDTIGRTPVVRLQhMSPREGVDVFVKLESENPGGSVKDRLALGVIEWAEKHGELKPGQTVVEATSGNTGIGLAMVCASRGYPLVCVMSEAFSIERRK 140
                  5799**********88888999**************************************************************************98 PP

>> TIGR01138  cysM: cysteine synthase B
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  122.0   0.0   2.1e-38   7.3e-36       2      99 ..      43     140 ..      42     141 .] 0.98

  Alignments for each domain:
  == domain 1    score: 122.0 bits;  conditional E-value: 2.1e-38
    TIGR01138   2 ilklvGntplvrlkrllpeedsevlvklegnnpaGsvkdrpalsmiveaekrGeikeGdvlieatsGntGialamvaalkGykvkllmpdnvseerka 99 
                  i +++G tp+vrl++++p e+++v+vkle+ np+Gsvkdr al +i  aek Ge+k+G++++eatsGntGi lamv+a +Gy++  +m +  s er++
  MMETSP1061-20121228|49503_1  43 ISDTIGRTPVVRLQHMSPREGVDVFVKLESENPGGSVKDRLALGVIEWAEKHGELKPGQTVVEATSGNTGIGLAMVCASRGYPLVCVMSEAFSIERRK 140
                  789*********************************************************************************************97 PP

>> TIGR01137  cysta_beta: cystathionine beta-synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.0   5.1e-35   1.8e-32       2     101 ..      40     139 ..      39     141 .] 0.96

  Alignments for each domain:
  == domain 1    score: 110.5 bits;  conditional E-value: 5.1e-35
    TIGR01137   2 adnildliGntPlvrlnkvskglkaevlakveffnaGGsvkdrialrmiedaeksGrlkpgdtliePtsGntGiGlalvaaikGykciivlPekvseekv 101
                   + i+d iG tP+vrl+++s+    +v+ k+e  n+GGsvkdr+al +ie aek G+lkpg+t++e tsGntGiGla+v+a +Gy  + v+ e  s e++
  MMETSP1061-20121228|49503_1  40 YERISDTIGRTPVVRLQHMSPREGVDVFVKLESENPGGSVKDRLALGVIEWAEKHGELKPGQTVVEATSGNTGIGLAMVCASRGYPLVCVMSEAFSIERR 139
                  5789*****************99***********************************************************************998875 PP

>> TIGR03945  PLP_SbnA_fam: 2,3-diaminopropionate biosynthesis protein SbnA
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.4   0.0   2.4e-31   8.3e-29       1      91 [.      43     133 ..      43     140 .. 0.95

  Alignments for each domain:
  == domain 1    score: 98.4 bits;  conditional E-value: 2.4e-31
    TIGR03945   1 ilsligntplvkleklfedekvelfaKlEglnpagSvKdrtAlallekaikegeikpgttiiESsSGnlaiaLamvcaalGlkficvvDpk 91 
                  i+++ig+tp+v+l+++ ++e v++f+KlE+ np+gSvKdr Al ++e a+k+ge+kpg+t++E +SGn +i+Lamvca++G+ ++cv+   
  MMETSP1061-20121228|49503_1  43 ISDTIGRTPVVRLQHMSPREGVDVFVKLESENPGGSVKDRLALGVIEWAEKHGELKPGQTVVEATSGNTGIGLAMVCASRGYPLVCVMSEA 133
                  5789***********************************************************************************8765 PP

>> TIGR02991  ectoine_eutB: ectoine utilization protein EutB
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.0   0.0   2.9e-13   9.8e-11      10     100 ..      40     133 ..      33     139 .. 0.87

  Alignments for each domain:
  == domain 1    score: 39.0 bits;  conditional E-value: 2.9e-13
    TIGR02991  10 aeriagrveetplveseslsellGvpvllklesrqttGsfklrGatnavlslsda...eraaGvvaastGnhGralayaakkegvravicmsel 100
                   eri+  + +tp+v+ + +s + Gv+v +kles+++ Gs k r a   +   +++   +  + vv a++Gn G +la   +  g + v  mse 
  MMETSP1061-20121228|49503_1  40 YERISDTIGRTPVVRLQHMSPREGVDVFVKLESENPGGSVKDRLALGVIEWAEKHgelKPGQTVVEATSGNTGIGLAMVCASRGYPLVCVMSEA 133
                  68*******************************************9999766544111345679************************99*985 PP

>> TIGR00260  thrC: threonine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.2   0.0   1.3e-09   4.5e-07      21     102 ..      48     128 ..      30     133 .. 0.77

  Alignments for each domain:
  == domain 1    score: 27.2 bits;  conditional E-value: 1.3e-09
    TIGR00260  21 gstelfrspklaeevgaenlyvkelfhgPtlaFKDrglqfvavlltkalelgne.tvlcAtsGdtgaaaaealagkanvkvvv 102
                  g+t+++r ++++ + g+ +++vk ++ +P ++ KDr    v    +k  el+   tv+ AtsG+tg  +a +  +  +   v+
  MMETSP1061-20121228|49503_1  48 GRTPVVRLQHMSPREGV-DVFVKLESENPGGSVKDRLALGVIEWAEKHGELKPGqTVVEATSGNTGIGLA-MVCASRGYPLVC 128
                  67888888888888777.9*****************9444444445555544438***********9999.777766665555 PP

>> TIGR01124  ilvA_2Cterm: threonine ammonia-lyase, biosynthetic
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   5.8e-07    0.0002       7      98 ..      39     133 ..      31     137 .. 0.84

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 5.8e-07
    TIGR01124   7 lkarvyeaavetplekaaklserlknrvllkredlqpvfsfklrGaynkm..aqlsaeqk.akGviaasaGnhaqGvalsakklGvkavivmpet 98 
                  +  r+ ++   tp+ + +++s r +  v++k e  +p  s k r a   +  a+   e k  + v+ a++Gn   G+a+ ++  G   v vm e+
  MMETSP1061-20121228|49503_1  39 IYERISDTIGRTPVVRLQHMSPREGVDVFVKLESENPGGSVKDRLALGVIewAEKHGELKpGQTVVEATSGNTGIGLAMVCASRGYPLVCVMSEA 133
                  45566777889*********************************99987722333344432689****************************876 PP

>> TIGR00263  trpB: tryptophan synthase, beta subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.0   8.2e-07   0.00028      42     136 ..      42     138 ..      13     141 .] 0.82

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 8.2e-07
    TIGR00263  42 llkeyagrptpltfaknlskklggakiylkredllhtGahkinnalgqallakrlGkkr...iiaetGaGqhGvatataaallglecevymGae.dver 136
                  ++++  gr tp+   +++s + g +++++k e  + +G+ k   alg +  a++ G  +    + e+ +G  G+  a+++a  g  ++  m +   +er
  MMETSP1061-20121228|49503_1  42 RISDTIGR-TPVVRLQHMSPREG-VDVFVKLESENPGGSVKDRLALGVIEWAEKHGELKpgqTVVEATSGNTGIGLAMVCASRGYPLVCVMSEAfSIER 138
                  55556666.78999999999997.******************************9975433399******************99998888864325555 PP

>> TIGR01127  ilvA_1Cterm: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0      0.69   2.4e+02      52      90 ..       8      46 ..       4      48 .. 0.78
   2 !   15.8   0.0   3.4e-06    0.0012       1      83 [.      50     135 ..      50     140 .. 0.85

  Alignments for each domain:
  == domain 1    score: -1.7 bits;  conditional E-value: 0.69
    TIGR01127 52 vaasaGnhaqGvalaakvfgikakivmPesaplskvkat 90
                 ++++ G  a    +  + +++ka   +P+sa+ ++++ t
  MMETSP1061-20121228|49503_1  8 ITSAYGTSASHTVMEESESSLKAFESLPRSAIYERISDT 46
                 566667777777788888999999999999999999876 PP

  == domain 2    score: 15.8 bits;  conditional E-value: 3.4e-06
    TIGR01127   1 tpleksstlsditgaevylklenlqktGsfkirGalnkiaklseeek...krGvvaasaGnhaqGvalaakvfgikakivmPesap 83 
                  tp+ + + +s   g +v++kle+    Gs k r al  i+ + ++++    + vv a++Gn   G a+     g + + vm e   
  MMETSP1061-20121228|49503_1  50 TPVVRLQHMSPREGVDVFVKLESENPGGSVKDRLALGVIEWAEKHGElkpGQTVVEATSGNTGIGLAMVCASRGYPLVCVMSEAFS 135
                  6777778899999********************99999987766554211568****************************99755 PP

>> TIGR02079  THD1: threonine dehydratase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.5   0.0   3.5e-06    0.0012       7      85 ..      40     121 ..      36     133 .. 0.85

  Alignments for each domain:
  == domain 1    score: 15.5 bits;  conditional E-value: 3.5e-06
    TIGR02079   7 kkrlkevvketPlqknerlsekykaeiylkredlqevrsyklrGaynklkqlsdeel...ekgvvcasaGnhaqGvayacrk 85 
                  ++r+ + + +tP+ + +++s + ++++++k e  +   s k r a   ++   +++     ++vv a++Gn   G+a  c  
  MMETSP1061-20121228|49503_1  40 YERISDTIGRTPVVRLQHMSPREGVDVFVKLESENPGGSVKDRLALGVIEWAEKHGElkpGQTVVEATSGNTGIGLAMVCAS 121
                  78999****************************************999976655433111578*****************76 PP

>> TIGR03844  cysteate_syn: cysteate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.6   0.0   5.5e-05     0.019     116     149 ..      99     132 ..      69     138 .. 0.75

  Alignments for each domain:
  == domain 1    score: 11.6 bits;  conditional E-value: 5.5e-05
    TIGR03844 116 gkkvlvvasaGntgrafaevsaltgkpvvlvvPe 149
                   ++++v a++Gntg  +a v+a  g+p+v v+ e
  MMETSP1061-20121228|49503_1  99 PGQTVVEATSGNTGIGLAMVCASRGYPLVCVMSE 132
                  4678999**********************99765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (141 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        82  (0.0199902); expected 82.0 (0.02)
Passed bias filter:                       79  (0.0192589); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 886.21
//
Query:       MMETSP1061-20121228|49506_1  [L=51]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
      4e-13   47.4   0.7    4.6e-13   47.2   0.5    1.1  1  TIGR01632 L11_bact: ribosomal protein L11


Domain annotation for each model (and alignments):
>> TIGR01632  L11_bact: ribosomal protein L11
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.2   0.5   1.1e-16   4.6e-13       1      34 [.      17      50 ..      17      51 .] 0.97

  Alignments for each domain:
  == domain 1    score: 47.2 bits;  conditional E-value: 1.1e-16
    TIGR01632  1 kkikaiiklqveagkAkPsppvGpalgqkgvnim 34
                 kk++a iklqv ag+A+PsppvGpalgq+gvnim
  MMETSP1061-20121228|49506_1 17 KKVEALIKLQVAAGAANPSPPVGPALGQHGVNIM 50
                 7999*****************************9 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (51 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       62  (0.0151146); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 305.97
//
Query:       MMETSP1061-20121228|49513_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 622.23
//
Query:       MMETSP1061-20121228|49538_1  [L=608]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-06   25.1   0.0    8.8e-06   23.8   0.0    1.6  2  TIGR01126 pdi_dom: protein disulfide-isomerase domain
      8e-06   23.8   0.0    1.6e-05   22.8   0.0    1.5  1  TIGR01068 thioredoxin: thioredoxin
  ------ inclusion threshold ------
      0.011   13.2   0.0      0.016   12.6   0.0    1.2  1  TIGR01130 ER_PDI_fam: protein disulfide isomerases


Domain annotation for each model (and alignments):
>> TIGR01126  pdi_dom: protein disulfide-isomerase domain
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.0   0.0       2.9     4e+03      71      90 ..      64      83 ..      57      89 .. 0.76
   2 !   23.8   0.0   6.5e-09   8.8e-06       4      88 ..     489     577 ..     486     592 .. 0.82

  Alignments for each domain:
  == domain 1    score: -4.0 bits;  conditional E-value: 2.9
    TIGR01126 71 gfPtlkffkkgkkepvdyeG 90
                 ++Pt ++ + g+++    +G
  MMETSP1061-20121228|49538_1 64 SYPTATLASVGQSQLAVLDG 83
                 79999999888887666666 PP

  == domain 2    score: 23.8 bits;  conditional E-value: 6.5e-09
    TIGR01126   4 enfdelvldenkdvlvefyaPWCGhCkklaPeyeklakelkkeeekvkiakvdatae....kelaskfkvsgfPtlkffkkgkkepvdy 88 
                  + f++ +++ +k++++   a +C  Ck++ P y ++a+  ++ ++  +++ v a++     ke a++++v++ P   f+++gk   ++y
  MMETSP1061-20121228|49538_1 489 DGFQSEIVQPKKSCVMFMSARFCKTCKTINPAYTRMARINQDGDNANHLTFVKAETSgalgKEFAAQLSVRAVPSFVFVREGKILGQTY 577
                  67899999888888888889******************9999888888999998887334456666778************99777766 PP

>> TIGR01068  thioredoxin: thioredoxin
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.8   0.0   1.2e-08   1.6e-05       4      97 ..     489     590 ..     486     593 .. 0.77

  Alignments for each domain:
  == domain 1    score: 22.8 bits;  conditional E-value: 1.2e-08
    TIGR01068   4 enfeetvassdklvlvDfwAeWCgpCkmlaPvleelak.....eleekvkvvKlnvdee..qeiaakygirsiPtlllfkngkev.krvvGakpkaalkeli 97 
                  + f++++ + +k  ++   A +C  Ck++ P    +a+     + ++++++vK ++     +e aa+ ++r++P  +++++gk   ++ v  +p  +++e++
  MMETSP1061-20121228|49538_1 489 DGFQSEIVQPKKSCVMFMSARFCKTCKTINPAYTRMARinqdgDNANHLTFVKAETSGAlgKEFAAQLSVRAVPSFVFVREGKILgQTYVSKLPSRKIDEAL 590
                  5688889998888888889************9887764222224567899*****98754489*******************98724456666666666655 PP

>> TIGR01130  ER_PDI_fam: protein disulfide isomerases
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   12.6   0.0   1.2e-05     0.016       9      91 ..     489     577 ..     481     601 .. 0.71

  Alignments for each domain:
  == domain 1    score: 12.6 bits;  conditional E-value: 1.2e-05
    TIGR01130   9 enfddlikenelvLveFY.APWCGHCksLaPeYekAAeelkkkspkvklakvDatee....kelaqkygvsGyPtLkifrnge.sssdY 91 
                  + f++ i + +   v+F  A  C  Ck+++P Y + A++ ++ + + +l  v a +     ke a + +v+  P+  + r+g+   + Y
  MMETSP1061-20121228|49538_1 489 DGFQSEIVQPKKSCVMFMsARFCKTCKTINPAYTRMARINQDGDNANHLTFVKAETSgalgKEFAAQLSVRAVPSFVFVREGKiLGQTY 577
                  55666555555555666437788888888888888888888888888888888877733334444445788888888888887555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (608 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       129  (0.0314481); expected 82.0 (0.02)
Passed bias filter:                      115  (0.0280351); expected 82.0 (0.02)
Passed Vit filter:                        21  (0.00511945); expected 4.1 (0.001)
Passed Fwd filter:                         3  (0.000731351); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.33u 0.13s 00:00:00.46 Elapsed: 00:00:00.28
# Mc/sec: 2767.22
//
Query:       MMETSP1061-20121228|49542_1  [L=619]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
   7.5e-186  616.1   2.9   8.6e-186  615.9   2.0    1.0  1  TIGR01311 glycerol_kin: glycerol kinase
    9.8e-47  157.4   4.3    4.3e-46  155.3   3.0    1.8  1  TIGR01312 XylB: xylulokinase
    1.2e-33  114.2   0.4    5.4e-33  112.1   0.3    1.8  1  TIGR01314 gntK_FGGY: gluconate kinase
    3.7e-24   83.3   1.5    1.1e-23   81.7   1.0    1.7  1  TIGR02628 fuculo_kin_coli: L-fuculokinase
    5.3e-22   76.0   0.1    3.6e-15   53.5   0.0    2.2  2  TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase
    1.3e-13   48.4   0.0    2.1e-13   47.7   0.0    1.2  1  TIGR01234 L-ribulokinase: L-ribulokinase
    1.4e-06   25.0   0.2    3.9e-05   20.2   0.0    2.5  2  TIGR02627 rhamnulo_kin: rhamnulokinase


Domain annotation for each model (and alignments):
>> TIGR01311  glycerol_kin: glycerol kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  615.9   2.0  1.5e-188  8.6e-186       2     496 .]      33     556 ..      32     556 .. 0.96

  Alignments for each domain:
  == domain 1    score: 615.9 bits;  conditional E-value: 1.5e-188
    TIGR01311   2 liaaiDqGttssraivfdkegeevakaqkelsqifpke.....gwvEhdpleilesvvkvlaealekleik..........aeeiaaiGitnqREttvvWdketgkplvnaivWqdtrtakiveelkeetkeeelrektGLplstYfsatKlrWlldnveevrkaaeeg..ellfGtvdtwliykLtgg...........kvhvtdvtNASRtlllnletlkwdeellelf....kipkellPeirsssevygeieeke...llkeevpitgvlGdqqaalvgqlclkkgeaKntYgtGcFlllntGekkviskhglLttvayklggkkptkyalEGsvavaGaavqwlrdnlklikkaeeveklaksvedsegvyfVPafsGLfaPyWdsdArgtivGltrkttkehiaraaleavafqardileamekdagvevkvLkvDGglsknnllmqiqadilgvkverpkvaettalGaAlaaglavgvwkseeeleksaeaeektfepemdeeerekkykkwkeaverslkw 496
                  l++aiDqGt+ssr+++f+keg++ a aqke +qifp++     gw Ehdplei+++v+++++ ++e+++ +           + i+aiGitnqREtt+ W+++tg+  +naivW dtrt +i++++++ + +++lr+ktGLpl +Yf++tK+rWlldnve++rk + ++   + fGtvdtwl+y+Ltg            + +vtdv+NASR l+l+l t +wde+l++++    ++p++ lP+i+ sse+y+++++++      ++vp++++lGdqqaal+gq+++++geaKntYgtG+Fl++ntG+k v s+hglLtt+ayk++++ +  yalEGsv+ +G+++qwlrd+l+l+k a e+e+la+  ++++g+y+VPaf+GLfaP+W++dArg +vG+t+  +k hi+raalea a+qar++ ea+e+d+gv++++LkvDGg s+n+llmq+qad++g +v+ p+v+etta+GaA+ aglavg+wk+++e+++ ++++ + f p+m ee+r+++++ wk+a++rsl+w
  MMETSP1061-20121228|49542_1  33 LVGAIDQGTSSSRFLLFTKEGKVAAWAQKETTQIFPNDtedmvGWHEHDPLEIWKTVRACMTAVVEAMDREvkkhnnrvlsGYSISAIGITNQRETTIAWNATTGETYYNAIVWDDTRTVSIASHIAA-GDDDRLRDKTGLPLASYFAGTKVRWLLDNVEALRKDLADQpeVVRFGTVDTWLLYQLTGTpasgeragnvgGLFVTDVSNASRWLFLDLVTVDWDEDLVKAVcgphSVPMSALPQIKASSEIYATVQKEStgiDKLKGVPVSAILGDQQAALFGQVAFEPGEAKNTYGTGMFLMMNTGTKLVPSTHGLLTTIAYKIDSEVV--YALEGSVSHSGSTIQWLRDQLGLLKAAPESEELAS--DHNDGLYLVPAFAGLFAPHWRPDARGCVVGITAAHHKGHIIRAALEAAAYQAREVFEAIEADSGVRLTALKVDGGGSHNKLLMQFQADMIGAPVVIPEVQETTAMGAAFSAGLAVGFWKDTQEIKTLWKQA-ELFVPTMAEEKRRANWEGWKKAITRSLDW 556
                  89**********************************97666669*********************9999888999999999999***************************************99987.7899******************************98765421578*************99999999999999*************************9987533338******************9999866666789***********************************************************9875..**********************************8..6789*****************************************************************************************************************************97.**************************998 PP

>> TIGR01312  XylB: xylulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.3   3.0   7.3e-49   4.3e-46       3     458 ..      37     530 ..      34     548 .. 0.81

  Alignments for each domain:
  == domain 1    score: 155.3 bits;  conditional E-value: 7.3e-49
    TIGR01312   3 iDlgTssvKallvdekgeviasgsasltvispkp.....gwsEqdpeewlealeealkellekakeekke..........ikaisisGQmHglvlLDe.egkvlrpaiLWnDtrtaeeceeleeelg.eeelleltgnlalegfTapKllWvrkhep....evfariakvlLP..kDylrykLtgev.............vteysDAsGTllfdvkkrewskellkaldle....esllPklvessekaGkvreevakklGle..egvkvaaGggdnaagAiGlgivkegkvlvslGtSGvvlaved..kaesdpegavhsFchal.pgkwyplgvtls.atsalewlkellgeldveelneeaekvevgaegvlllPylsGERtPhldpqargsliGltanttradlarAvlegvafalrdsldilkelkglkikeirliGGGaksevwrqiladilglevvvpeeeegaalGaAilAaialgekdlveecseavvkqkes 458
                  iD gTss + ll  ++g+v a ++++ t i p++     gw E dp e ++ +  +++++ e++ +e k+          i+ai+i+ Q    ++  +  g+  ++ai W Dtrt++ ++++ +  g +++l++ tg   +  f  +K+ W+ ++ +    +   + + v       +l y+Ltg+              vt++s As  l++d  + +w+++l+ka+  +     s+lP++ +sse+ ++v++   +++G++  +gv+v+a  gd+ a+  G  + ++g++    Gt G +l+++   k +++++g +++ +    ++  y l   +s  +s+++wl++ lg l+  +  e  e ++   +g+ l+P + G   Ph  p+arg ++G+ta++++ ++ rA+le++a+  r+ ++++++ +g++++ +++ GGG+++++  q +ad++g++vv+pe +e++a+GaA  A +a g  ++++e++  +++++  
  MMETSP1061-20121228|49542_1  37 IDQGTSSSRFLLFTKEGKVAAWAQKETTQIFPNDtedmvGWHEHDPLEIWKTVRACMTAVVEAMDREVKKhnnrvlsgysISAIGITNQRETTIAWNAtTGETYYNAIVWDDTRTVSIASHIAA--GdDDRLRDKTGLPLASYFAGTKVRWLLDNVEalrkDLADQPEVVRFGtvDTWLLYQLTGTPasgeragnvgglfVTDVSNASRWLFLDLVTVDWDEDLVKAVCGPhsvpMSALPQIKASSEIYATVQK---ESTGIDklKGVPVSAILGDQQAALFGQVAFEPGEAKNTYGT-GMFLMMNTgtKLVPSTHGLLTTIAYKIdSEVVYALEGSVShSGSTIQWLRDQLGLLK--AAPESEELASDHNDGLYLVPAFAGLFAPHWRPDARGCVVGITAAHHKGHIIRAALEAAAYQAREVFEAIEADSGVRLTALKVDGGGSHNKLLMQFQADMIGAPVVIPEVQETTAMGAAFSAGLAVGFWKDTQEIKTLWKQAELF 530
                  9********************9999887765543233348**********99999988887766544332122233333399************99873699******************9976..5589*********************98886511115555556677652257*******96433444455566669************************9986554555899***************9...5677763369******************************9.6666666511445677888888886541567899987777257889********444..44555555556678****************************************************************************************************************667899999988877655 PP

>> TIGR01314  gntK_FGGY: gluconate kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.1   0.3   9.3e-36   5.4e-33       4     472 ..      36     533 ..      33     544 .. 0.79

  Alignments for each domain:
  == domain 1    score: 112.1 bits;  conditional E-value: 9.3e-36
    TIGR01314   4 gvdigttstkavlfeengkvvakes....igyplytdd.vdvaeenleeifeavlvtikevs....keleeek.......eikfvsfsaqmhslialdend.kpltrlitwadnraakyaekikeekngfeiykrtgtpihpmaplskiiwl....kaerkdifqk..aakyleikeyifkrlfdt.............yvidyslasatgllnlkeldwdkealela.g...ikeeqlpklvetteilknlkeeyakkmgidketkfviga..sdgvlsnlgvnaikkgevavtigtsgairtvid.k..pktdekgrifcyaltee.hyviggpvnnggvvlrwlrdellaseietakrlgvdpydvltkiakrvkpgadgllfhpylageraplwnanargsffgltlshkkehmiraalegviynlytvalalvevvdetlkmikatggfaksevwrqllsdifesevvvpesyessclgaiilglkavgkiedlsavssmvgaterytpi 472
                   +d gt+s++ +lf ++gkv a  +    + +p  t+d v+  e+++ ei+++v   +  v+    +e ++++        i+++ ++ q  + ia +  + +   ++i w d+r++  a++i +  +   +  +tg p+      +k+ wl    +a rkd++++    ++  + ++++++l +t             +v d+s as   +l+l ++dwd++ ++ + g   +  + lp++  + ei   +++e +   gidk     + a   d   + +g  a ++ge+  t gt   + + +  k  p t     +++y ++ e  y + g v   g  ++wlrd+l   +             +  ++a       dgl + p +ag  ap w ++arg   g+t +h+k h+iraale   y+   v+ a+    +  l+ +k  gg ++ ++  q+ +d++ ++vv+pe +e++ +ga   +  avg  +d ++++++   +e + p 
  MMETSP1061-20121228|49542_1  36 AIDQGTSSSRFLLFTKEGKVAAWAQkettQIFPNDTEDmVGWHEHDPLEIWKTVRACMTAVVeamdREVKKHNnrvlsgySISAIGITNQRETTIAWNATTgETYYNAIVWDDTRTVSIASHIAAGDD-DRLRDKTGLPLASYFAGTKVRWLldnvEALRKDLADQpeVVRFGTVDTWLLYQLTGTpasgeragnvgglFVTDVSNASRWLFLDLVTVDWDEDLVKAVcGphsVPMSALPQIKASSEIYATVQKEST---GIDKLKGVPVSAilGDQQAALFGQVAFEPGEAKNTYGTGMFLMMNTGtKlvPSTHGLLTTIAYKIDSEvVYALEGSVSHSGSTIQWLRDQLGLLKAA----------PESEELAS---DHNDGLYLVPAFAGLFAPHWRPDARGCVVGITAAHHKGHIIRAALEAAAYQAREVFEAIEADSGVRLTALKVDGGGSHNKLLMQFQADMIGAPVVIPEVQETTAMGAAFSAGLAVGFWKDTQEIKTLWKQAELFVPT 533
                  48*****************986443111144565554427889*******998765544443111133332221122222377888889999****99876267889****************88755.67999*****************833224457899886225799***********9764444444444444689*********************9986424333677899999999999999988754...5655433333331145566668****************987765554233488888889999*999873699******************9655544..........34556665...578******************************************************9988888999**********************************************************999888888776 PP

>> TIGR02628  fuculo_kin_coli: L-fuculokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   81.7   1.0   1.9e-26   1.1e-23       6     454 ..      37     523 ..      32     532 .. 0.76

  Alignments for each domain:
  == domain 1    score: 81.7 bits;  conditional E-value: 1.9e-26
    TIGR02628   6 ldcGatnlraiainekGkivasasvknetkq...aien.sdyhiwdleeilqklveca....qkvqaevdekd...ilgiavttfGvdG......apfdeqgnqlypiiswkcprtvpvmenvereldakrlyrrnGiGdysfntlyklrwlkeh..........kpql..lekmdkfvfisslithrltGe.............fttditmaGtsmmtdltsrnfdpailealG....lseelfpplveaGekiGklrsdlakllGlnadvpvisaGhdtqfalfGsGaee.nqpvlssGtweilmars.qraelslealsaGvtveldsqaglynpavqwlasgvvewvakll..ftaetasdelykvlieearkvangakgvvnletdlsslgqgaieGlslfttrGeiyraaleglakklkrrldvlekvsqlkakelvvvGGGsknvlwnqiranaldlpvkvvddaeatvlGaalfafaGvGiyedveeaqaq 454
                  +d G++  r +   ++Gk+ a a+ k+ t++   + e+   +h  d  ei++ +  c     + +  ev++ +   + g ++++ G+        a     g+  y  i w   rtv++  ++    d  rl  ++G+   s+ +  k+rwl ++          +p++  +  +d +      +  +ltG+             f td++ a   + +dl + ++d ++++a+     ++   +p+++ + e   +++++ + +  l+  vpv +   d q alfG  a e  ++  + Gt   lm+ +  +  +s + l + ++ ++ds   +   +    + + ++w++++l    a   s+e      +++  ++++  g   +  +     +g + G++    +G+i raale  a + ++ ++ +e  s ++ + l v GGGs+n+l  q +a+++  pv + +  e+t +Gaa+ a   vG+++d +e ++ 
  MMETSP1061-20121228|49542_1  37 IDQGTSSSRFLLFTKEGKVAAWAQ-KETTQIfpnDTEDmVGWHEHDPLEIWKTVRACMtavvEAMDREVKKHNnrvLSGYSISAIGITNqrettiAWNATTGETYYNAIVWDDTRTVSIASHIAAG-DDDRLRDKTGLPLASYFAGTKVRWLLDNvealrkdladQPEVvrFGTVDTW------LLYQLTGTpasgeragnvgglFVTDVSNASRWLFLDLVTVDWDEDLVKAVCgphsVPMSALPQIKASSEIYATVQKESTGIDKLKG-VPVSAILGDQQAALFGQVAFEpGEAKNTYGTGMFLMMNTgTKLVPSTHGLLTTIAYKIDSEVVYALEGSVSHSGSTIQWLRDQLglLKAAPESEE-LASDHNDGLYLVPAFAGL--FAPHWRPDARGCVVGITAAHHKGHIIRAALEAAAYQAREVFEAIEADSGVRLTALKVDGGGSHNKLLMQFQADMIGAPVVIPEVQETTAMGAAFSAGLAVGFWKDTQEIKTL 523
                  688888889999999999876554.33333311122221469***************9777756666666555222345566666664322222245567899********************876.7899********************977633331112224444223344555......555554322222222222233***********************9998874243388899****************9999988886.****************9996526888899999999887625778999999999999***987655444444555679****99732344444444.455567777777777776..577888888999*********************************************************************************************9998765 PP

>> TIGR01315  5C_CHO_kinase: FGGY-family pentulose kinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.4   0.1   6.5e-08   3.8e-05       4     150 ..      36     191 ..      33     261 .. 0.77
   2 !   53.5   0.0   6.1e-18   3.6e-15     354     507 ..     374     526 ..     350     549 .. 0.84

  Alignments for each domain:
  == domain 1    score: 20.4 bits;  conditional E-value: 6.5e-08
    TIGR01315   4 GvdvGtGsaraaivdldGdvlelaaqkiktwrpss.....gleeqssdeiWqaicsvvkkvlaeak..vdkssvkGiGfdatcslvvldkd.gePlpvs.kegeaeqniilWldhraeeeaekinatkhsllkyv.GGkvsvemevPkvlWlkenlp 150
                   +d Gt s r  ++  +G+v + a ++ +   p+      g +e++  eiW+++  ++  v+   +  v k++ + +    + s + ++++ +  ++     ge+  n i+W d r+   a +i a + + l+   G  ++      kv Wl +n+ 
  MMETSP1061-20121228|49542_1  36 AIDQGTSSSRFLLFTKEGKVAAWAQKETTQIFPNDtedmvGWHEHDPLEIWKTVRACMTAVVEAMDreVKKHNNRVLSGY-SISAIGITNQrETTIAWNaTTGETYYNAIVWDDTRTVSIASHIAAGDDDRLRDKtGLPLASYFAGTKVRWLLDNVE 191
                  49********************99887766544431222278899999***********999865411555554444333.44555555552555554458999**********************9998888651556888889999999998875 PP

  == domain 2    score: 53.5 bits;  conditional E-value: 6.1e-18
    TIGR01315 354 iydylnerlkelaaktsaasv.salvkdlfvypdllGnrsPiadPnlrgviiGldmerdkdslallylatleaiaygtrqivealta.aGaviksillsGgaaqnellvqlladicdlPvlipdvqeavllGaailGakaagtaesleeamkrlsk 507
                    ++l ++l  l a+++  ++ s    +l+++p + G  +P   P++rg ++G+   + k  ++    a+lea ay+ r++ ea++a  G+ + ++ + Gg ++n+ll+q  ad+ + Pv+ip+vqe+  +Gaa     a g  +  +e+     +
  MMETSP1061-20121228|49542_1 374 TIQWLRDQLGLLKAAPESEELaSDHNDGLYLVPAFAGLFAPHWRPDARGCVVGITAAHHKGHII---RAALEAAAYQAREVFEAIEAdSGVRLTALKVDGGGSHNKLLMQFQADMIGAPVVIPEVQETTAMGAAFSAGLAVGFWKDTQEIKTLWKQ 526
                  4689999998877777666651556778****************************99998875...589**************98725799******************************************9998998887777777554444 PP

>> TIGR01234  L-ribulokinase: L-ribulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.7   0.0   3.6e-16   2.1e-13     349     494 ..     375     520 ..     362     543 .. 0.88

  Alignments for each domain:
  == domain 1    score: 47.7 bits;  conditional E-value: 3.6e-16
    TIGR01234 349 eeakekqlqllealsekaakqesgehglvaldWfnGnrsvlvdarlkGvlvgltlatkaeelyralveatafGtrmivetfk.esGvaveellaaGGiaeknplvmqiyadvlnlplkivasdqapalGaaifaavaageyadipka 494
                  ++  + ql+ll+a  e     +  + gl  +  f+G  ++    + +G +vg+t a +  ++ ra +ea+a+ +r + e+ + +sGv +  l + GG    n+l+mq  ad+++ p+ i   + ++a+Gaa  a +a g ++d ++ 
  MMETSP1061-20121228|49542_1 375 IQWLRDQLGLLKAAPESEELASDHNDGLYLVPAFAGLFAPHWRPDARGCVVGITAAHHKGHIIRAALEAAAYQAREVFEAIEaDSGVRLTALKVDGGG-SHNKLLMQFQADMIGAPVVIPEVQETTAMGAAFSAGLAVGFWKDTQEI 520
                  555677788888888877777778888999999999999999999**********************************996489************8.99**************************************99997764 PP

>> TIGR02627  rhamnulo_kin: rhamnulokinase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    2.3   0.0     0.018        11     164     195 ..     232     263 ..      36     303 .. 0.79
   2 !   20.2   0.0   6.7e-08   3.9e-05     359     447 ..     434     523 ..     425     528 .. 0.84

  Alignments for each domain:
  == domain 1    score: 2.3 bits;  conditional E-value: 0.018
    TIGR02627 164 Gklvaeytnasttqllnieekkwdkdlleylg 195
                  G  v++  nas   +l++ + +wd+dl++ + 
  MMETSP1061-20121228|49542_1 232 GLFVTDVSNASRWLFLDLVTVDWDEDLVKAVC 263
                  56788899999999999999999999998754 PP

  == domain 2    score: 20.2 bits;  conditional E-value: 6.7e-08
    TIGR02627 359 aelarcifdslallyrqvleelaelrgkdisklyivGGGsqnallnqliadlcgieviaGpv.easalGnlgvqlialdeiedvaefrki 447
                  +++ r   ++ a   r+v e ++   g  +++l + GGGs+n+ll q+ ad+ g  v++  v e++a+G   +  +a++  +d +e++ +
  MMETSP1061-20121228|49542_1 434 GHIIRAALEAAAYQAREVFEAIEADSGVRLTALKVDGGGSHNKLLMQFQADMIGAPVVIPEVqETTAMGAAFSAGLAVGFWKDTQEIKTL 523
                  5666777788888889999999999******************************9988665389999*998888888888888877665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (619 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       126  (0.0307167); expected 82.0 (0.02)
Passed bias filter:                       85  (0.0207216); expected 82.0 (0.02)
Passed Vit filter:                        12  (0.0029254); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.46u 0.16s 00:00:00.62 Elapsed: 00:00:00.37
# Mc/sec: 2208.14
//
Query:       MMETSP1061-20121228|49555_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        14  (0.00341297); expected 82.0 (0.02)
Passed bias filter:                       14  (0.00341297); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 277.18
//
Query:       MMETSP1061-20121228|49561_1  [L=81]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (81 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       45  (0.0109703); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 534.56
//
Query:       MMETSP1061-20121228|49567_1  [L=494]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-91  305.3   9.7    1.9e-91  304.9   6.7    1.0  1  TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
    1.5e-13   48.4   2.7    1.5e-13   48.4   1.8    2.1  2  TIGR00891 2A0112: MFS transporter, sialate:H+ symporter (SHS) family
    9.1e-11   39.1  17.6    2.6e-10   37.6   0.9    2.2  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    1.2e-08   32.1   3.9      2e-07   28.0   0.1    2.2  2  TIGR00898 2A0119: cation transport protein
    9.3e-08   28.9   0.3    9.3e-08   28.9   0.2    2.2  2  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    1.5e-06   25.2   0.2      3e-06   24.2   0.1    1.4  1  TIGR00887 2A0109: phosphate:H+ symporter
    4.9e-06   24.5   2.0    4.9e-06   24.5   1.4    2.9  3  TIGR00880 2_A_01_02: multidrug resistance protein
    2.2e-05   21.0   0.6    2.2e-05   21.0   0.4    1.8  2  TIGR00894 2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
    0.00045   16.0   0.3    0.00045   16.0   0.2    1.8  2  TIGR01299 synapt_SV2: synaptic vesicle protein SV2


Domain annotation for each model (and alignments):
>> TIGR00883  2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  304.9   6.7   4.1e-94   1.9e-91       1     398 [.      49     442 ..      49     444 .. 0.90

  Alignments for each domain:
  == domain 1    score: 304.9 bits;  conditional E-value: 4.1e-94
    TIGR00883   1 GnavewfDfllYafaAvlvfeefFfpssdp..lvallatlatfavgFlaRplGaivfGalgDrlGRkktLvvtlllMgigtvligllPsyatiGiwApilLlllrliQGlslGgEyggaalllaEsApegkrglygsfqqvgasvglllaalvvlllsallseealleWgWRiPFlvsvvlvligLylRlkleEtpvfekekekkkkearkkriplaevltkkrkelllvlglv.iatsvlfYllttylasYlkktaklglsaesallvlllalil.lllviplsgllsdriGrrkvlilltvlaallavpllsallesssillvlllllllalivamytgvmaallaelfptevRytgvslaynlasviggglapviaaaLvaltgdkaavgiyllllali 398
                  Gn++ew+Df+l++f++ +++ +fF+ ++ p    +l++++ +f+ +Fl+Rp+G+i++G++gD++GRk++L  +l lM+i+t+++g+lP+y+++G+  ++lL+l+rl QG+s+Gg + ++ ++ +E+ p+++ g+ygs + ++a+vg+ll++l  +l+ +ll++e+ll+WgWRiPF+++  +++++ ylR++ ++       ++ ++++    + pl+  +++  +  ll + +v +  ++ fY+  +++  ++ +   ++ +  +a +++ + l++ ++ +ip++g+lsdr+Gr +++ + ++l+++l  p++ +l   +++ ++++++l+l +++++y g+  a l+e f+ evR+t +s++y+l+ +i+gg++p+ia++L ++ g   a g+++++  ++
  MMETSP1061-20121228|49567_1  49 GNVLEWYDFALFGFFSDIIATNFFPVDDTPedHDNLIKSFVIFGSAFLMRPIGGILIGYVGDKYGRKEALTRSLYLMAIPTTIMGCLPTYEQVGVLSTVLLCLCRLTQGISVGGQLPASLVYTVEKRPREQWGYYGSLPMMAANVGTLLGNLGGALMRQLLTDEQLLSWGWRIPFFSGFWIATVAWYLRKNGTDGVYDPPGSTGSAED----HNPLKVAFRRGNRLALLSTSIVpMLWAAGFYVSFVWMSIFMGEL--MNPPMPDAFWINSVGLFFgMTWMIPIAGALSDRVGRVPLMTVSGLLLTVLG-PVFLVLISRGNVATAVASQLMLGVLLSFYGGPLCAWLVENFSPEVRMTSASIGYDLSHAIAGGFSPAIATILYTNAG-VNATGLVYVIFGVL 442
                  99***********************75544225689***********************************************************************************************************************************************************99887666654444433....45888888888877777776661556778***************..558888899998888776155679*************************99.8888888899****************************************************************999.77777777776665 PP

>> TIGR00891  2A0112: MFS transporter, sialate:H+ symporter (SHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   1.8   3.3e-16   1.5e-13      52     188 ..      90     240 ..      44     297 .. 0.80
   2 ?    2.9   2.4     0.022        10     293     389 ..     326     425 ..     310     441 .. 0.77

  Alignments for each domain:
  == domain 1    score: 48.4 bits;  conditional E-value: 3.3e-16
    TIGR00891  52 llsaalivrsvGalllGlwaDrvgrrlplvtsvvlfsvatllcafaptyek........llivrlviGigmgGeyGlaaalaiedvPkklrsvlsGllisgyavGfvlaavvysvvvn......vlgdsWriLfflsilpiilalflrkrv 188
                    + a+++r++G++l+G ++D++gr+ +l  s++l ++ t + +  ptye+        l   rl  Gi++gG+  ++  +++e+ P ++ +    l + +  vG +l  +   ++ +      +l  +Wri ff +   + +a +lrk+ 
  MMETSP1061-20121228|49567_1  90 IFGSAFLMRPIGGILIGYVGDKYGRKEALTRSLYLMAIPTTIMGCLPTYEQvgvlstvlLCLCRLTQGISVGGQLPASLVYTVEKRPREQWGYYGSLPMMAANVGTLLGNLGGALMRQlltdeqLLSWGWRIPFFSGFWIATVAWYLRKNG 240
                  45899********************************************863332222234579******************************************99876555554400011145568*******************985 PP

  == domain 2    score: 2.9 bits;  conditional E-value: 0.022
    TIGR00891 293 vfGtlsevlgrrkalvialllgqllivPvfal..s.aekavLglglfllqllvqGvwGilPkhlaelapadaravvaGltYqlG.nLaaalasiiearlae 389
                  + G ls+++gr   + ++ ll   ++ Pvf +  s  ++a   +   +l +l     G l + l e +  ++r   a + Y+l  ++a+ +++ i + l  
  MMETSP1061-20121228|49567_1 326 IAGALSDRVGRVPLMTVSGLLL-TVLGPVFLVliSrGNVATAVASQLMLGVLLSFYGGPLCAWLVENFSPEVRMTSASIGYDLShAIAGGFSPAIATILYT 425
                  6788888888876666665554.3556888642244788888899999999999999*************************9747899999999887755 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   37.6   0.9   5.7e-13   2.6e-10      29     181 ..      53     230 ..      31     238 .. 0.70
   2 !    6.6   6.2    0.0015      0.69     264     396 ..     284     422 ..     260     424 .. 0.66

  Alignments for each domain:
  == domain 1    score: 37.6 bits;  conditional E-value: 5.7e-13
    TIGR00895  29 dGldllvlgfaapalskew.gldkv...elGfllsagLiGmvl.....GallfgplaDrigRkrvllvsillfsvftlasalatnvtq........LlvlRflaglGlGgllpnliaLvsEyapkrfratvvglvavGyaiGaa....vggllaallip....afgWrslflvggiip 181
                  + +d +++gf +  ++ ++  +d     +   + s+ ++G ++     G++l+g++ D++gRk++l+ s+ l+++ t+ +++  ++ q        L++ R+  g+ +Gg lp+  + ++E  p    +   +l ++  ++G++    +g+l+  ll       +gWr+ f+ g +i+
  MMETSP1061-20121228|49567_1  53 EWYDFALFGFFSDIIATNFfPVDDTpedHDNLIKSFVIFGSAFlmrpiGGILIGYVGDKYGRKEALTRSLYLMAIPTTIMGCLPTYEQvgvlstvlLCLCRLTQGISVGGQLPASLVYTVEKRPREQWGYYGSLPMMAANVGTLlgnlGGALMRQLLTDeqllSWGWRIPFFSGFWIA 230
                  556666666666666665424443311134567788888876444444*******************************999988888333223324456999**********************99999888776666666551110555555555432222589999988886665 PP

  == domain 2    score: 6.6 bits;  conditional E-value: 0.0015
    TIGR00895 264 vvvYlltsWlPkLlveagaslskaalll..vllnvGgvlgslllgaladrlgpk.vlallll....laavfavlvvstlssptllllllvilGlfvngaqsgllalmaefYptaiRatgvgwaigiGrlga.iigpilagv 396
                  +++Y+   W+ + + e+       a+++  v l +G+   + ++gal+dr+g+   +++  l    l+ vf+vl++    +++ ++   ++lG++     + l a   e +++++R t  +  + +  + a  ++p++a +
  MMETSP1061-20121228|49567_1 284 AGFYVSFVWMSIFMGELMNPPMPDAFWInsVGLFFGMTWMIPIAGALSDRVGRVpLMTVSGLlltvLGPVFLVLISR--GNVATAVASQLMLGVLLSFYGGPLCAWLVENFSPEVRMTSASIGYDLSHAIAgGFSPAIATI 422
                  56777778888888887777777776652245668888888888888888888754433333001134444444444..67777777777888888888888888888888888888888877777765442577777665 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   0.1   4.4e-10     2e-07     141     229 ..     100     196 ..      75     224 .. 0.80
   2 !    5.0   0.4     0.004       1.8     136     171 ..     317     352 ..     311     399 .. 0.88

  Alignments for each domain:
  == domain 1    score: 28.0 bits;  conditional E-value: 4.4e-10
    TIGR00898 141 lGslvlGqlsDrfGRkkvLllstlvtavsgvltafspnyt........vflvlrlLvGvgiagivvvalvLitEflpkkaRaivgilievffalGll 229
                  +G++++G++ D++GRk++L+ s   +a+ ++++   p+y+         +++ rl +G++ +g  +++lv  +E  p+++  + g l  ++  +G+l
  MMETSP1061-20121228|49567_1 100 IGGILIGYVGDKYGRKEALTRSLYLMAIPTTIMGCLPTYEqvgvlstvLLCLCRLTQGISVGGQLPASLVYTVEKRPREQWGYYGSLPMMAANVGTL 196
                  7************************************9973333222246778999******************99999888888777776666666 PP

  == domain 2    score: 5.0 bits;  conditional E-value: 0.004
    TIGR00898 136 fvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgv 171
                  f+G+     + G lsDr GR  ++++s l  +v+g 
  MMETSP1061-20121228|49567_1 317 FFGMTWMIPIAGALSDRVGRVPLMTVSGLLLTVLGP 352
                  66777777899****************999999884 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.9   0.2     2e-10   9.3e-08      62     229 ..      45     225 ..      11     238 .. 0.76
   2 ?    1.4   8.4     0.042        19     367     498 ..     327     453 ..     259     455 .. 0.71

  Alignments for each domain:
  == domain 1    score: 28.9 bits;  conditional E-value: 2e-10
    TIGR00879  62 aalagllfgYdtavisaalallkfefkftsnlsd...asssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatals.....vevlivgRvllGigvGiasalvPlYisEiApkalRgalvslyqlaitfGilvaaifg.....sgklvanntlgwriplgl 229
                  a + g++  +    + ++ + ++ + +f+ +++       +++ ++++++++   ig++++gy++d++grk++l  +  l+ i  +++++  t  +       +l++ R+  Gi vG++   + +Y+ E  p +  g+ +sl  +a  +G l++ + g       +  +  + gwrip+ +
  MMETSP1061-20121228|49567_1  45 AGVMGNVLEWYDFALFGFFSDIIATNFFPVDDTPedhDNLIKSFVIFGSAFLMRPIGGILIGYVGDKYGRKEALTRSLYLMAIPTTIMGCLPTYEQvgvlsTVLLCLCRLTQGISVGGQLPASLVYTVEKRPREQWGYYGSLPMMAANVGTLLGNLGGalmrqLLTDEQLLSWGWRIPFFS 225
                  444444433333333333333333333443322255445667778899999999**************************************999999998889*************************************************9999887444333333356688888866 PP

  == domain 2    score: 1.4 bits;  conditional E-value: 0.042
    TIGR00879 367 aiflvdrfGRrtllliGaagmaiclfvlgilgvssvtgsskaasivaivfillfiaayalgigpvvwvlvsEifplsvRpkgiaiav..aanwlanfiiallfpimlen.sigqgvvFiffgalnvlalilvyff 498
                  a  l+dr+GR +l +++ +  ++   v+ +l+ ++ + +  +as +++ ++l f   y    gp +  l +E f+ +vR  + +i      +  + f  a+++   +++    +g v+++fg+l+v++l + y f
  MMETSP1061-20121228|49567_1 327 AGALSDRVGRVPLMTVSGLLLTVLGPVFLVLISRGNV-ATAVASQLMLGVLLSF---Y---GGPLCAWL-VENFSPEVRMTSASIGYdlSHAIAGGFSPAIATILYTNAgVNATGLVYVIFGVLSVAGLYINYCF 453
                  5679***********9966655555555544444444.2233344444444433...3...36766555.59*******8888876511334445566666666666664456788************9998876 PP

>> TIGR00887  2A0109: phosphate:H+ symporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.2   0.1   6.7e-09     3e-06      19     149 ..      43     180 ..      39     211 .. 0.75

  Alignments for each domain:
  == domain 1    score: 24.2 bits;  conditional E-value: 6.7e-09
    TIGR00887  19 vvaG.vGFftDsYDlFaislvtkllgyvYye...tk.gklpssvsalvkasasvgtllgqllfglladllgrkrvygleliivivatvasalsakssalsvvat..llfyrlllgvGiggdyplsaiitsefatkkrR 149
                  +vaG +G  ++ YD     + + ++   ++    t   + +   s ++ +sa++ + +g +l g+++d+ grk+  +  l ++ + t  ++  ++ + + v+ t  l+  rl  g+ +gg+ p s + t e   + + 
  MMETSP1061-20121228|49567_1  43 TVAGvMGNVLEWYDFALFGFFSDIIATNFFPvddTPeDHDNLIKSFVIFGSAFLMRPIGGILIGYVGDKYGRKEALTRSLYLMAIPTTIMGCLPTYEQVGVLSTvlLCLCRLTQGISVGGQLPASLVYTVEKRPREQW 180
                  5788459999****999*************9443111122222233566899*******************************9999999998887777666541167889999***********9999886555544 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.5   1.4   1.1e-08   4.9e-06      10     130 ..      97     233 ..      87     236 .. 0.86
   2 ?   -1.5   0.3       1.2   5.5e+02      90     125 ..     280     314 ..     273     324 .. 0.64
   3 !    8.2   6.5    0.0012      0.54      16     132 ..     325     445 ..     315     451 .. 0.76

  Alignments for each domain:
  == domain 1    score: 24.5 bits;  conditional E-value: 1.1e-08
    TIGR00880  10 gqlvvsplsglltdrvGrkpvllvglfifvlsqllfals........snitvliiarilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla........qalgwralflilallalla 130
                  +  + ++l+g++ d++Grk  l  +l ++++ + ++            + ++l+++r+ qG++ +  l+a   +  +  ++e+ +   +l ++++++g +lG l Ga++           +gwr++f+   ++a++a
  MMETSP1061-20121228|49567_1  97 MRPIGGILIGYVGDKYGRKEALTRSLYLMAIPTTIMGCLptyeqvgvLSTVLLCLCRLTQGISVGGQLPASLVYTVEKRPREQWGYYGSLPMMAANVGTLLGNLGGALMRqlltdeqlLSWGWRIPFFSGFWIATVA 233
                  556889*************************887776655888888888899***********************************99999999*99999999999998555565443579999999888887775 PP

  == domain 2    score: -1.5 bits;  conditional E-value: 1.2
    TIGR00880  90 gllsagialgpi.lGpllGavlaqalgwralflilal 125
                  +l++ag+ ++++ +++++G ++ + +     f+i ++
  MMETSP1061-20121228|49567_1 280 MLWAAGFYVSFVwMSIFMGELMNPPMPD--AFWINSV 314
                  7788888777764677778777744232..5666554 PP

  == domain 3    score: 8.2 bits;  conditional E-value: 0.0012
    TIGR00880  16 plsglltdrvGrkpvllvglf.ifvlsqllfals..snitvliiarilqGfgaaaalvagaaliadiikee..ersvalgllsagialgpilGpllGavlaqalgwralflilallallafi 132
                  p++g+l+drvGr p++ v+ + + vl+ + ++l    n+++ + + ++ G+  ++      a + + +++e  + s+ +g+ ++ + +g  ++p++ ++l++  g  a+ l+ +++ +l+++
  MMETSP1061-20121228|49567_1 325 PIAGALSDRVGRVPLMTVSGLlLTVLGPVFLVLIsrGNVATAVASQLMLGVLLSFYGGPLCAWLVENFSPEvrMTSASIGYDLSHAIAG-GFSPAIATILYTNAGVNATGLVYVIFGVLSVA 445
                  999*************8865505556666555545789*****************9988888777777776455666677766655444.57899999999888888888888887777665 PP

>> TIGR00894  2A0114euk: Na(+)-dependent inorganic phosphate cotransporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.0   0.4   4.8e-08   2.2e-05      80     184 ..      89     199 ..      75     236 .. 0.78
   2 ?   -2.3   1.0      0.56   2.6e+02      86     218 ..     317     357 ..     310     452 .. 0.66

  Alignments for each domain:
  == domain 1    score: 21.0 bits;  conditional E-value: 4.8e-08
    TIGR00894  80 lilssvfygslilqipvGylakkygtkkvigaalllssvlsll...iPiaaav...gvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivl 184
                  +i++s f+   i  i +Gy+ +kyg k  +  +l l  + + +   +P+  +v   +++l++++R+ qG+  g   pa+ + ++   P +  +   s+ +  a++Gtl+  
  MMETSP1061-20121228|49567_1  89 VIFGSAFLMRPIGGILIGYVGDKYGRKEALTRSLYLMAIPTTImgcLPTYEQVgvlSTVLLCLCRLTQGISVGGQLPASLVYTVEKRPREQWGYYGSLPMMAANVGTLLGN 199
                  68999999999999*****************99988877655423378766651116788**************************9999999999999998999998753 PP

  == domain 2    score: -2.3 bits;  conditional E-value: 0.56
    TIGR00894  86 fygslilqipvGylakkygtkkvigaalllssvlslliPiaaavgvalvivlRvlqGlaeglvspaqhellakWiPPkERsrlvsavlsGaqlGtlivlpisGlicesdlgWpavfYifgivgtvvlilwlvl 218
                  f                                                                                           +G   ++pi+G + +  ++ p    ++g+  tv+  ++lvl
  MMETSP1061-20121228|49567_1 317 F-------------------------------------------------------------------------------------------FGMTWMIPIAGALSDRVGRVPL-MTVSGLLLTVLGPVFLVL 357
                  3...........................................................................................3444444444444444322222.223333333333333332 PP

>> TIGR01299  synapt_SV2: synaptic vesicle protein SV2
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.0   0.2   9.8e-07   0.00045     213     303 ..      96     194 ..      80     206 .. 0.74
   2 ?   -1.2   0.7      0.16        73     604     666 ..     319     387 ..     305     403 .. 0.54

  Alignments for each domain:
  == domain 1    score: 16.0 bits;  conditional E-value: 9.8e-07
    TIGR01299 213 lgmmvgaflwggladklgrkqsllislsvns....vfaflssfvq..gygt..fllcrllsgvgiggaipivfsyfaevlarekrgehlswlcmfwmig 303
                  l   +g +l g + dk grk++l  sl + +    ++  l ++ q     t  + lcrl  g+ +gg +p  + y  e   re+ g + s   m   +g
  MMETSP1061-20121228|49567_1  96 LMRPIGGILIGYVGDKYGRKEALTRSLYLMAipttIMGCLPTYEQvgVLSTvlLCLCRLTQGISVGGQLPASLVYTVEKRPREQWGYYGSLPMMAANVG 194
                  44558999*************998877665511114555666544212334114579**************************9998887766665555 PP

  == domain 2    score: -1.2 bits;  conditional E-value: 0.16
    TIGR01299 604 gtlavlpgnivsallmdkigrlrmlagssvlsgv.scffl...sfgtses.....amiallclynglsiaaw 666
                  g   ++p   ++  l d++gr+ +++ s +l +v    fl   s g+  +     +m+++l  + g  ++aw
  MMETSP1061-20121228|49567_1 319 GMTWMIP---IAGALSDRVGRVPLMTVSGLLLTVlGPVFLvliSRGNVATavasqLMLGVLLSFYGGPLCAW 387
                  4444444...34557899999888877754433313444411144554331111145555555555555555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (494 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       123  (0.0299854); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                        14  (0.00341297); expected 4.1 (0.001)
Passed Fwd filter:                         9  (0.00219405); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               9  [number of targets reported over threshold]
# CPU time: 0.33u 0.16s 00:00:00.49 Elapsed: 00:00:00.31
# Mc/sec: 2103.31
//
Query:       MMETSP1061-20121228|49589_1  [L=63]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (63 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        64  (0.0156021); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.15s 00:00:00.25 Elapsed: 00:00:00.21
# Mc/sec: 395.97
//
Query:       MMETSP1061-20121228|49591_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 498.63
//
Query:       MMETSP1061-20121228|49584_1  [L=200]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (200 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       117  (0.0285227); expected 82.0 (0.02)
Passed bias filter:                      105  (0.0255973); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.16s 00:00:00.30 Elapsed: 00:00:00.23
# Mc/sec: 1147.73
//
Query:       MMETSP1061-20121228|49590_1  [L=358]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (358 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        76  (0.0185275); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.19u 0.13s 00:00:00.32 Elapsed: 00:00:00.27
# Mc/sec: 1750.08
//
Query:       MMETSP1061-20121228|49601_1  [L=42]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (42 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        12  (0.0029254); expected 82.0 (0.02)
Passed bias filter:                       12  (0.0029254); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 230.98
//
Query:       MMETSP1061-20121228|49607_1  [L=40]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (40 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.22
# Mc/sec: 239.98
//
Query:       MMETSP1061-20121228|49608_1  [L=86]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (86 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 567.55
//
Query:       MMETSP1061-20121228|49606_1  [L=316]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (316 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.21u 0.14s 00:00:00.35 Elapsed: 00:00:00.25
# Mc/sec: 1668.34
//
Query:       MMETSP1061-20121228|49644_1  [L=57]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (57 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        90  (0.0219405); expected 82.0 (0.02)
Passed bias filter:                       60  (0.014627); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.21
# Mc/sec: 358.26
//
Query:       MMETSP1061-20121228|49650_1  [L=223]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.017   12.0   0.0      0.025   11.4   0.0    1.1  1  TIGR02749 prenyl_cyano: solanesyl diphosphate synthase


Domain annotation for each model (and alignments):
>> TIGR02749  prenyl_cyano: solanesyl diphosphate synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   11.4   0.0   6.1e-06     0.025      43      85 ..     173     216 ..     157     219 .. 0.80

  Alignments for each domain:
  == domain 1    score: 11.4 bits;  conditional E-value: 6.1e-06
    TIGR02749  43 gGkrlrPaivllvsrataeeeeltar.hrrlaeitelihtaslv 85 
                   GkrlrPa++l+v+  ++ +  +t   +   aei+  +h   lv
  MMETSP1061-20121228|49650_1 173 HGKRLRPAMILVVTDFLIRHGVITPDnEPDYAEIIAAMHRERLV 216
                  6*******************99887515689****999988877 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (223 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.12s 00:00:00.27 Elapsed: 00:00:00.25
# Mc/sec: 1177.34
//
Query:       MMETSP1061-20121228|49654_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       31  (0.00755729); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.18
# Mc/sec: 454.63
//
Query:       MMETSP1061-20121228|49658_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       106  (0.0258411); expected 82.0 (0.02)
Passed bias filter:                       89  (0.0216967); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.15s 00:00:00.26 Elapsed: 00:00:00.23
# Mc/sec: 355.80
//
Query:       MMETSP1061-20121228|49676_1  [L=68]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (68 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 427.39
//
Query:       MMETSP1061-20121228|49683_1  [L=66]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (66 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        44  (0.0107265); expected 82.0 (0.02)
Passed bias filter:                       43  (0.0104827); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.14s 00:00:00.22 Elapsed: 00:00:00.17
# Mc/sec: 512.43
//
Query:       MMETSP1061-20121228|49711_1  [L=296]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (296 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       81  (0.0197465); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.17u 0.14s 00:00:00.31 Elapsed: 00:00:00.22
# Mc/sec: 1775.85
//
Query:       MMETSP1061-20121228|49714_1  [L=274]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (274 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        53  (0.0129205); expected 82.0 (0.02)
Passed bias filter:                       52  (0.0126767); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.18u 0.13s 00:00:00.31 Elapsed: 00:00:00.20
# Mc/sec: 1808.25
//
Query:       MMETSP1061-20121228|49762_1  [L=330]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (330 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       177  (0.0431497); expected 82.0 (0.02)
Passed bias filter:                      108  (0.0263286); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.13s 00:00:00.33 Elapsed: 00:00:00.25
# Mc/sec: 1742.26
//
Query:       MMETSP1061-20121228|49772_1  [L=54]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (54 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        21  (0.00511945); expected 82.0 (0.02)
Passed bias filter:                       20  (0.00487567); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.13s 00:00:00.21 Elapsed: 00:00:00.17
# Mc/sec: 419.26
//
Query:       MMETSP1061-20121228|49760_1  [L=399]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (399 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       127  (0.0309605); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.13s 00:00:00.36 Elapsed: 00:00:00.24
# Mc/sec: 2194.32
//
Query:       MMETSP1061-20121228|49777_1  [L=50]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (50 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        89  (0.0216967); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.08u 0.15s 00:00:00.23 Elapsed: 00:00:00.23
# Mc/sec: 286.93
//
Query:       MMETSP1061-20121228|49800_1  [L=75]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (75 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.21
# Mc/sec: 471.39
//
Query:       MMETSP1061-20121228|49804_1  [L=62]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (62 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        85  (0.0207216); expected 82.0 (0.02)
Passed bias filter:                       76  (0.0185275); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.22
# Mc/sec: 371.97
//
Query:       MMETSP1061-20121228|49807_1  [L=431]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.5e-54  183.2  17.4    2.1e-54  182.7  12.0    1.1  1  TIGR00841 bass: bile acid transporter


Domain annotation for each model (and alignments):
>> TIGR00841  bass: bile acid transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  182.7  12.0   5.2e-58   2.1e-54      38     307 ..     141     425 ..     123     430 .. 0.84

  Alignments for each domain:
  == domain 1    score: 182.7 bits;  conditional E-value: 5.2e-58
    TIGR00841  38 illilLllimlslGltlelekfkellrkP.kgviigllaQygimPLvgFllakvfklsp......elavgvlivgccPGGtaSnvltyllkGdvalsismTtiStllalgmlPLllyiyakklvdgtlkvpykkivls.lvivliPvsiGvlvksklpqiakiilk.vgliavillsvliavvlainvenlaeie........lklllvvillplagfllGyllak.lakldlarcrtvsiEvGmQnsqLastllqlsfs.plsavpsaifpliyalfqlafallllki 307
                  +++++L+l+m + Gltl+ ++f  +l+k   +v +g+l+Q+++mPL++F+++ ++ l +      +l +g+ +vgc+PGGtaSn++++++k dvals+++T +St+la + +PLl++++ +  +     +    +++  + +vl+Pv+ G+lv+   p++a +i   +++ +v+l+ v++a v+a n++ l+  +        + +++ v+ l+ +gfl Gyl+ +  ++   +++rt+siE+GmQns+La++l++      +   p a+++  ++ +++++a++++++
  MMETSP1061-20121228|49807_1 141 LITLMLALVMWGTGLTLTKDDFTVVLKKDlAAVPVGVLCQFMVMPLTAFVIGRLLLLGSstshgsALFLGLCLVGCSPGGTASNLVSLIAKADVALSVLLTSCSTILASVATPLLVKLLVGSTIA----ISGWTLCTAtARVVLLPVLFGMLVNARAPKFASYISRfTPFASVVLVAVICAGVVAENASLLFSTTssggarlvPLIVSSVLSLHSIGFLAGYLVPRrGLGFGERTSRTISIETGMQNSALAVVLARSIGApSIASLPGALSATAHSCMGSILAAYWRRV 425
                  67888*********************99835799*******************9999641222225779***********************************************998776666....6665555555*************************99899999999************99987654223322227788888899***********8625788889*********************9887734555688888889999999999988765 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (431 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       125  (0.0304729); expected 82.0 (0.02)
Passed bias filter:                       48  (0.0117016); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.22u 0.11s 00:00:00.33 Elapsed: 00:00:00.20
# Mc/sec: 2844.37
//
Query:       MMETSP1061-20121228|49802_1  [L=459]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (459 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       104  (0.0253535); expected 82.0 (0.02)
Passed bias filter:                      101  (0.0246221); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.25u 0.14s 00:00:00.39 Elapsed: 00:00:00.23
# Mc/sec: 2634.04
//
Query:       MMETSP1061-20121228|49822_1  [L=82]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (82 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       138  (0.0336421); expected 82.0 (0.02)
Passed bias filter:                       87  (0.0212092); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.27
# Mc/sec: 400.86
//
Query:       MMETSP1061-20121228|49827_1  [L=53]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (53 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        11  (0.00268162); expected 82.0 (0.02)
Passed bias filter:                       11  (0.00268162); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.12s 00:00:00.21 Elapsed: 00:00:00.27
# Mc/sec: 259.09
//
Query:       MMETSP1061-20121228|49825_1  [L=839]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.5e-08   30.3   0.0      1e-07   29.1   0.0    1.5  1  TIGR04095 dnd_restrict_1: DNA phosphorothioation system restriction enzyme


Domain annotation for each model (and alignments):
>> TIGR04095  dnd_restrict_1: DNA phosphorothioation system restriction enzyme
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.1   0.0   2.5e-11     1e-07       8     170 ..     256     423 ..     246     441 .. 0.81

  Alignments for each domain:
  == domain 1    score: 29.1 bits;  conditional E-value: 2.5e-11
    TIGR04095   8 elrdyqkeaik...aWfknngrGilkmatGtGktltaLalvsklaekikslvvvvvvPykhLveqWakeaekF.glepilayesvs.rWqkelsekleelsskakkllliittnatlkeekFqsqlrllkkkllliaDeahnlGakrlk..eal.pdsiklRLgLsatPeR 170
                   l+dyq e+++   + ++n+  Gil+   G Gkt+  + lv++l  +  +   +vv+P   L   W++e +k+   +p+  y++ +   ++ l   l+  + + k++ +++t  +t + +  q++l +l     +i+De h l  +r+    +l   ++++RL L+ tP  
  MMETSP1061-20121228|49825_1 256 VLKDYQLEGVRwlaSLYENGVSGILADEMGLGKTIQVIGLVAHLLTQDVTGPFLVVAPLATLP-NWVREFQKWlPSKPVVRYHGPApDREALLRGPLNPKEKRDKRFPVVVTSFETAIRD--QKKLSKLGPFAYVIVDEGHRLKNHRCMliRSLkQLDASNRLLLTGTPIQ 423
                  579******9722234678899**********************999999999******9985.7****9875278999999886515666778889999999999999***99998876..567777777788*********998853223441457999********75 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (839 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       270  (0.0658216); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         8  (0.00195027); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.43u 0.13s 00:00:00.56 Elapsed: 00:00:00.35
# Mc/sec: 3163.97
//
Query:       MMETSP1061-20121228|49851_1  [L=113]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (113 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        59  (0.0143832); expected 82.0 (0.02)
Passed bias filter:                       42  (0.0102389); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.21
# Mc/sec: 710.23
//
Query:       MMETSP1061-20121228|49852_1  [L=159]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (159 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       113  (0.0275475); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        10  (0.00243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.14u 0.13s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 953.92
//
Query:       MMETSP1061-20121228|49850_1  [L=219]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
     0.0027   14.8   0.0     0.0033   14.5   0.0    1.1  1  TIGR01227 hutG: formimidoylglutamase


Domain annotation for each model (and alignments):
>> TIGR01227  hutG: formimidoylglutamase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.5   0.0     8e-07    0.0033     148     245 ..      61     157 ..      31     177 .. 0.91

  Alignments for each domain:
  == domain 1    score: 14.5 bits;  conditional E-value: 8e-07
    TIGR01227 148 AHfDlRavederptsGTpfrqlldeeqaedfhlivlGirrfsntqalfdyakkkgvryvtddalaelsletikdileefldevDfiyltvdlDVldaa 245
                  A  D+ ++ d+++ts   f q+ ++  + d +l+  G +r   t  + +  + +gv+ + +   +   +  +k+++e+fl + D i   v   V+  a
  MMETSP1061-20121228|49850_1  61 ALCDCSQTVDGNTTSNDKFFQIRNLYFKPDSQLVFRGLSRN-ITIGYDAEKHSHGVKHHGSSFAKTNLTSVQKNVIEKFLRKRDLILYNVSRAVFAXA 157
                  668999********************************995.6899*************999999999999***************999988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (219 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        93  (0.0226719); expected 82.0 (0.02)
Passed bias filter:                       77  (0.0187713); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.15u 0.14s 00:00:00.29 Elapsed: 00:00:00.28
# Mc/sec: 996.75
//
Query:       MMETSP1061-20121228|49863_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       65  (0.0158459); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.14s 00:00:00.24 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1061-20121228|49868_1  [L=108]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (108 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        22  (0.00536324); expected 82.0 (0.02)
Passed bias filter:                       22  (0.00536324); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.24
# Mc/sec: 593.95
//
Query:       MMETSP1061-20121228|49876_1  [L=72]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (72 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        80  (0.0195027); expected 82.0 (0.02)
Passed bias filter:                       73  (0.0177962); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.26
# Mc/sec: 365.51
//
Query:       MMETSP1061-20121228|49867_1  [L=628]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (628 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        92  (0.0224281); expected 82.0 (0.02)
Passed bias filter:                       64  (0.0156021); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.27u 0.14s 00:00:00.41 Elapsed: 00:00:00.41
# Mc/sec: 2021.69
//
Query:       MMETSP1061-20121228|49891_1  [L=41]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (41 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        30  (0.00731351); expected 82.0 (0.02)
Passed bias filter:                       28  (0.00682594); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.13s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 245.98
//
Query:       MMETSP1061-20121228|49946_1  [L=80]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (80 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        70  (0.0170648); expected 82.0 (0.02)
Passed bias filter:                       63  (0.0153584); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.13s 00:00:00.24 Elapsed: 00:00:00.24
# Mc/sec: 439.96
//
Query:       MMETSP1061-20121228|49938_1  [L=382]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (382 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       499  (0.121648); expected 82.0 (0.02)
Passed bias filter:                       93  (0.0226719); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.16s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1800.71
//
Query:       MMETSP1061-20121228|49942_1  [L=1947]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (1947 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        78  (0.0190151); expected 82.0 (0.02)
Passed bias filter:                       72  (0.0175524); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.70u 0.20s 00:00:00.89 Elapsed: 00:00:00.82
# Mc/sec: 3133.94
//
Query:       MMETSP1061-20121228|49957_1  [L=205]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (205 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       186  (0.0453437); expected 82.0 (0.02)
Passed bias filter:                      112  (0.0273038); expected 82.0 (0.02)
Passed Vit filter:                         7  (0.00170648); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.16u 0.13s 00:00:00.29 Elapsed: 00:00:00.21
# Mc/sec: 1288.47
//
Query:       MMETSP1061-20121228|49965_1  [L=94]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (94 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        47  (0.0114578); expected 82.0 (0.02)
Passed bias filter:                       47  (0.0114578); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.12s 00:00:00.23 Elapsed: 00:00:00.19
# Mc/sec: 653.00
//
Query:       MMETSP1061-20121228|49979_1  [L=373]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (373 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       331  (0.0806923); expected 82.0 (0.02)
Passed bias filter:                      127  (0.0309605); expected 82.0 (0.02)
Passed Vit filter:                        18  (0.0043881); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.23u 0.15s 00:00:00.38 Elapsed: 00:00:00.30
# Mc/sec: 1641.06
//
Query:       MMETSP1061-20121228|50039_1  [L=465]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.4e-40  137.4  19.8    1.7e-40  137.1  13.7    1.1  1  TIGR00881 2A0104: phosphoglycerate transporter family protein
    2.6e-31  106.9  20.5    3.5e-31  106.5  14.2    1.0  1  TIGR00712 glpT: glycerol-3-phosphate transporter
    6.4e-13   46.2  22.2      1e-12   45.5   5.5    2.3  2  TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
    6.8e-08   29.5   2.3    6.8e-08   29.5   1.6    2.3  3  TIGR00898 2A0119: cation transport protein
    7.2e-05   19.3   4.1    7.2e-05   19.3   2.9    2.3  2  TIGR00879 SP: MFS transporter, sugar porter (SP) family
    7.4e-05   20.1  23.9      0.008   13.4  16.6    2.6  1  TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
  ------ inclusion threshold ------
        0.2    9.6  36.8       0.25    9.3  10.8    2.7  2  TIGR00880 2_A_01_02: multidrug resistance protein


Domain annotation for each model (and alignments):
>> TIGR00881  2A0104: phosphoglycerate transporter family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  137.1  13.7   2.9e-43   1.7e-40       1     377 [.      32     438 ..      32     440 .. 0.81

  Alignments for each domain:
  == domain 1    score: 137.1 bits;  conditional E-value: 2.9e-43
    TIGR00881   1 figylayylvRknfalalpelqeeiglsktdlGlllsafsiaYgiskfvvgvvsDrvsarvflaigLilvaivnlflgfss...........slwvliallalnGlfqglgwppcgrlltkwf....srserGtvvaiwnishnvggallpplvllai.alllswhvvfivpgiiaiivslilllllrdspqsvglpkleelrnee........keedkekkeeeltkkeillqyvlknkvlwlislvnvfvyvvrtgiedWvplYltqekglskekasvavtlfelaglvGtllaGwlsDklfkgrraplavifmaliivsllvywlivaanklvvlillfvlGf...lvyGpilligva.asela.p......kkaiGtaaglvglfaylggilaglplgyladlfgwag 377
                  f gy++  + Rk+++++  +lq++ g s + lG + + f+++Yg + ++ g + D  +++ +laigL +++++ ++l+++            + + ++ +l+l G+fq++g p+ + ++ +wf    s ++rG ++++w++ + +g + +  lv+++i     s  ++++vp++  i+++++ + l+ d+  ++g+   e    ++        + e+ e+ ee+  ++ i +    + +++   +++  f  ++ +++  W+p +l    +++ ++a+ + +l+ ++ ++G ++ G++sD  f grra +  +fm l+iv l+v+ ++ ++ +l+ ++llf+lG+   lv Gp ++i +a a++la +      +k  Gt++gl++  ++  +++  l +g l   fgw+ 
  MMETSP1061-20121228|50039_1  32 FGGYFMSHFSRKSYSTVKQQLQNKAGYSPSVLGAMDTVFMLTYGAGNVINGKLGDTFNPVTILAIGLWGSGACLVILSAAVladlvsvsvlvANATILTILFLFGFFQATGGPVGTAVMGNWFcdaeSVKKRGVIFGFWTCHQYMGDISAG-LVTAWIlGAGGSYIWALFVPAVANILFAFVTIQLVADPY-NMGIITPEVKIRQAkyeakkkeMAEKGETIEEDAGPQAISFYDAFRIPMVANYAFAFGFFKLTNYCLFFWLPYFLGR--HFDPVTANLIASLYSVGMMPGGIIVGYVSD-IFGGRRALVIGVFMGLLIVFLAVFAKVSESPDLSPTVLLFMLGCmgiLVGGPNNIITSAvAADLAsHpsvrgsSKSLGTVTGLINGTGSFTSAIGLLAIGPLQTAFGWSA 438
                  89****************************************************************************9999999977655544556778999********************65555689**********9999887777.6666651667788999******************99854.4554433333332223332212333344445666677788888889999999999999999**************86..5*****************************.**************************888888888888887765222789***998765245554241222224566666666666666666666777888888999985 PP

>> TIGR00712  glpT: glycerol-3-phosphate transporter
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  106.5  14.2     6e-34   3.5e-31      24     425 ..      18     448 ..       6     458 .. 0.75

  Alignments for each domain:
  == domain 1    score: 106.5 bits;  conditional E-value: 6e-34
    TIGR00712  24 krlr.lq..vflgiflgyaayylvrknfalalpylve.qgfskaelglvlsavsiayglskfimgsvsdrsnprvflaaglllsalvmlllgllp...watssi....aimfvllflngwfqgmgwppcgrtmvhwf....sksergtivsiwnvahnigggilaalvl...lgialfvvwkaalylpaiiaiivallvvllvrdtpqscgl..psieeyrndypddynek......aekeltakeillqyvlknkllwyiaianvfvylvrygvldwspvylkevkhfaledsawayflyeyagipgtllcgwvsdkvfkgkrgatgvlfmil..vtiavvvywl.npagnplvdlillivigfliygpvmlig.lhalelapkka.agtaagltglfgylggsva.asai....vgyavdrfgwdggflvliggsi 425
                  krl+ +q   f   f gy   ++ rk ++    +l++ +g+s + lg + +   ++yg  + i g++ d  np  +la+gl  s+++ ++l+       ++ s+    a ++ +lfl g+fq  g p     m  wf    s ++rg i   w + + + g i a lv+   lg     ++  al++pa++ i++a++ + lv d p   g+  p ++  +  y  + +e        e++   + i +   ++  ++   a+a  f  l  y ++ w p +l   +hf++  ++    ly +  +pg +++g+vsd +f g+r++   +fm l  v++av +     p   p+v l +l  +g+l+ gp  +i    a +la + +  g++  l  + g + g+ + +sai    +g     fgw   ++ lig++ 
  MMETSP1061-20121228|50039_1  18 KRLKaYQpfAFFVTFGGYFMSHFSRKSYSTVKQQLQNkAGYSPSVLGAMDTVFMLTYGAGNVINGKLGDTFNPVTILAIGLWGSGACLVILSAAVladLVSVSVlvanATILTILFLFGFFQATGGPVGTAVMGNWFcdaeSVKKRGVIFGFWTCHQYM-GDISAGLVTawiLGAGG--SYIWALFVPAVANILFAFVTIQLVAD-PYNMGIitPEVKIRQAKYEAKKKEMaekgetIEEDAGPQAISFYDAFRIPMVANYAFAFGFFKLTNYCLFFWLPYFLG--RHFDPVTANLIASLYSVGMMPGGIIVGYVSD-IFGGRRALVIGVFMGLliVFLAVFAKVSeSPDLSPTVLLFMLGCMGILVGGPNNIITsAVAADLASHPSvRGSSKSLGTVTGLINGTGSfTSAIgllaIGPLQTAFGWSAVWIYLIGCTA 448
                  555523411344456677777789*****99999986267*****************************************9999998887654300133444422223356789**********************554456779*******885555.56666666411144444..55569*****************9999.555554236666666677665555400022244555566788888999999999**********************96..8*****************************9.899****9877777651256677665442578899**9999***********9888625799***9865168888888889999887651444433335556689**********99765 PP

>> TIGR00895  2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    7.4   4.2   0.00065      0.38     276     368 ..      52     155 ..      26     159 .. 0.78
   2 !   45.5   5.5   1.8e-15     1e-12     134     394 ..     158     427 ..     153     431 .. 0.73

  Alignments for each domain:
  == domain 1    score: 7.4 bits;  conditional E-value: 0.00065
    TIGR00895 276 LlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vla.........lllllaavfavlvvs.tlssptllllllvilGlfvngaqsgllalmaefYp 368
                  L  +ag+s s   ++ +++ +   +g ++ g l d ++p  +la         l++l aav+a lv+   l   + +l++l+++G+f + +  + +a+m++ + 
  MMETSP1061-20121228|50039_1  52 LQNKAGYSPSVLGAMDTVFMLTYGAGNVINGKLGDTFNPVtILAiglwgsgacLVILSAAVLADLVSVsVLVANATILTILFLFGFFQATGGPVGTAVMGNWFC 155
                  77889999999999999999999999999999999999983333111111111345677888888877678889999***********9999999999999886 PP

  == domain 2    score: 45.5 bits;  conditional E-value: 1.8e-15
    TIGR00895 134 apkrfratvvglvavGyaiGaavggllaallipafg.WrslflvggiiplllllllikvLpEsikflvekkpekvrkilnaiapslqaeaqs.elaeekseekkkrsvvkllfkgklakatllLwllyf.lllvvvYlltsWlPkLlveagaslskaalllvllnvGgvlgslllgaladrlgpk.vlal......llllaavfavlvvstlssptllllllvilGlfvngaqsgllalma.efYp.taiRa......tgvgwaigiGrlgaiigpila 394
                   + + r+ + g+ ++   +G + +gl++a+++ a g +   ++v +++ +l + ++i+ + ++++  +   + k+r+        +++ea++ e+ae+ ++ ++  + +++ f ++    +++ ++  f +  ++ Y l  WlP+ l +  ++   a l+  l +vG++ g +++g+++d +g + +l++      l+++ avfa +  s   spt+ll++l ++G++v g+   ++++ a ++ + + +R+      t  g + g G + ++ig + +
  MMETSP1061-20121228|50039_1 158 ESVKKRGVIFGFWTCHQYMGDISAGLVTAWILGAGGsYIWALFVPAVANILFAFVTIQLVADPYNMGIITPEVKIRQ--------AKYEAKKkEMAEKGETIEEDAGPQAISFYDAFRIPMVANYAFAFgFFKLTNYCLFFWLPYFL-GRHFDPVTANLIASLYSVGMMPGGIIVGYVSDIFGGRrALVIgvfmglLIVFLAVFAKVSESPDLSPTVLLFMLGCMGILVGGPNNIITSAVAaDLAShPSVRGsskslgTVTGLINGTGSFTSAIGLLAI 427
                  57799*************************99875532334566669******************999995555443........3444444488899998988899999889999988888877765559999**********765.45689999999***********************9875544301111133445666666666667899***************987766554414322245665111111445555566666666666555 PP

>> TIGR00898  2A0119: cation transport protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.3   0.4         1     6e+02     171     194 ..     118     140 ..      68     176 .. 0.62
   2 !   29.5   1.6   1.2e-10   6.8e-08     127     188 ..     304     370 ..     300     384 .. 0.81
   3 ?   -0.8   0.1      0.18   1.1e+02     178     209 ..     433     464 ..     418     465 .] 0.89

  Alignments for each domain:
  == domain 1    score: -3.3 bits;  conditional E-value: 1
    TIGR00898 171 vltafspnytvflvlrlLvGvgia 194
                   ++++  n t++++l +L G+++a
  MMETSP1061-20121228|50039_1 118 SVSVLVANATILTIL-FLFGFFQA 140
                  222333333333333.23444444 PP

  == domain 2    score: 29.5 bits;  conditional E-value: 1.2e-10
    TIGR00898 127 kvkltqsvvfvGvLlGslvlGqlsDrfGRkkvLllstlvtavsgvltaf.....spnytvflvlrlL 188
                   ++l+ s++ vG++ G++++G++sD fG +++L++ +++ +++ +l++f     sp+++  ++l++L
  MMETSP1061-20121228|50039_1 304 TANLIASLYSVGMMPGGIIVGYVSDIFGGRRALVIGVFMGLLIVFLAVFakvseSPDLSPTVLLFML 370
                  67899*******************************************9333333556655655555 PP

  == domain 3    score: -0.8 bits;  conditional E-value: 0.18
    TIGR00898 178 nytvflvlrlLvGvgiagivvvalvLitEflp 209
                   + + +v+  L G+   g  +++  +++E+++
  MMETSP1061-20121228|50039_1 433 AFGWSAVWIYLIGCTATGTCLMGSKIYAEIVG 464
                  577899************************98 PP

>> TIGR00879  SP: MFS transporter, sugar porter (SP) family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    3.1   7.9     0.011       6.2     377     494 ..      91     212 ..      51     219 .. 0.78
   2 !   19.3   2.9   1.2e-07   7.2e-05      96     191 ..     300     401 ..     238     450 .. 0.76

  Alignments for each domain:
  == domain 1    score: 3.1 bits;  conditional E-value: 0.011
    TIGR00879 377 rtllliGaagmaiclfvlgilgvssvtgsskaa.sivaivfillfiaayalgigpvvwvlvsEif..plsvRpkgiaia..vaanwlanfiiallfpimlensigqg.vvFiffgalnvlalil 494
                   t+l+iG+ g+ +cl++l+ ++    ++  +++ ++  i  il+   +++++ gpv   ++   f   +sv+  g ++   ++ ++++ +  +l++  +l +  g++ ++ +++++ n+l++++
  MMETSP1061-20121228|50039_1  91 VTILAIGLWGSGACLVILSAAVLADLVSV-SVLvANATILTILFLFGFFQATGGPVGTAVMGNWFcdAESVKKRGVIFGfwTCHQYMGDISAGLVTAWILGA-GGSYiWALFVPAVANILFAFV 212
                  589************************65.5555***********************999999994447888888887622567888888888888888884.333313333444444444444 PP

  == domain 2    score: 19.3 bits;  conditional E-value: 1.2e-07
    TIGR00879  96 asssqwglvvsillvGgligalfagylsdrfgrkkslliiallfvigailsllaatals....vevlivgRvllGigvGiasalvPlYi.sEiA.pkalRga 191
                  +  +   l++s+++vG + g++++gy+sd fg++++l i++ + ++  +l ++a+++ s      vl +    +Gi vG+ ++++ + + + +A ++++Rg 
  MMETSP1061-20121228|50039_1 300 FDPVTANLIASLYSVGMMPGGIIVGYVSDIFGGRRALVIGVFMGLLIVFLAVFAKVSESpdlsPTVLLFMLGCMGILVGGPNNIITSAVaADLAsHPSVRGS 401
                  56788899***********************************99999999999998888877556666666788888887665444331343315666664 PP

>> TIGR00710  efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4  16.6   1.4e-05     0.008      20     347 ..      41     412 ..      23     449 .. 0.67

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 1.4e-05
    TIGR00710  20 gidmYlpalpeiakdlsvsasavqltltlyllglavgqLllGplsDsyGRkpvlLlgl.....lvfalsslvla.......lsenietllvlRflqafgasaalVisqalvrDiyakeelsk....vysilmlllalaPllapliGgyvlv...flsWh....aiF.avlsligillvalif...lllpeTkakekri................qistsvetfllllkdkellgyalivgassgglfaflsaapfvlidimgvspevfgllfalniialifgsfligrlvkkigaksllrialvllivsavllvltallglvslalviavai.....lvgigvslvlsialalaLeefphvaGtasallgtlrlvl 347
                  +   Y     +++++ + s+s   +  t ++l  ++g  + G+l+D +    +l +gl      + +ls+ vla       l+ n++ l++l fl +f+ + +  ++ a++   +  +e+ k    ++++ +    +  + a l+ +++l       W     a+  ++++ ++i lva  +    + pe k ++++                  ++ ++  f + ++  ++  ya++ g+++   +  +   p+ l    ++ p +  l++ l ++ ++ g++++g++  + g++  l+i++ + ++ ++l v++++++ + l+  +  ++     +++ g   ++++a+a  L + p v G+  +l  t+  ++
  MMETSP1061-20121228|50039_1  41 SRKSYSTVKQQLQNKAGYSPSVLGAMDTVFMLTYGAGNVINGKLGDTFNPVTILAIGLwgsgaCLVILSAAVLAdlvsvsvLVANATILTIL-FLFGFFQATGGPVGTAVMGNWFCDAESVKkrgvIFGFWTCHQYMGDISAGLVTAWILGaggSYIWAlfvpAVAnILFAFVTIQLVADPYnmgIITPEVKIRQAKYeakkkemaekgetieeDAGPQAISFYDAFRIPMVANYAFAFGFFKLTNYCLFFWLPYFLG--RHFDPVTANLIASLYSVGMMPGGIIVGYVSDIFGGRRALVIGVFMGLLIVFLAVFAKVSESPDLSPTVLLFMlgcmgILVGGPNNIITSAVAADLASHPSVRGSSKSLG-TVTGLI 412
                  5555666667889999999999**************************99999988753333346666665544111111155666655555.77777777777777777777777555554111166666666666666555555555531111123211112221233444555555444222577887766544334444555455544444555677899************************9999**9998..8999**************************************8888888888888888877655544444441100044456678*********************984.444433 PP

>> TIGR00880  2_A_01_02: multidrug resistance protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3  10.8   0.00043      0.25      44     134 ..     119     214 ..      68     220 .. 0.63
   2 ?    5.4   9.1    0.0067       3.9       6     133 ..     311     452 ..     307     460 .. 0.68

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 0.00043
    TIGR00880  44 lfalssnitvliiarilqGfgaaaalvagaalia....diikeeersvalgllsagialgpilGpllGavla...qalgwralflilallallafill 134
                  +++l+ n t+l i++ l Gf+ a+  ++g+a++     d+ + ++r+v++g++   + +g i + l++a++      + w alf+ +++  l+af+++
  MMETSP1061-20121228|50039_1 119 VSVLVANATILTILF-LFGFFQATGGPVGTAVMGnwfcDAESVKKRGVIFGFWTCHQYMGDISAGLVTAWILgagGSYIW-ALFVPAVANILFAFVTI 214
                  234447777777775.55888888888888887611115556679***************************65555566.66666666666666655 PP

  == domain 2    score: 5.4 bits;  conditional E-value: 0.0067
    TIGR00880   6 gyAlgqlvvsplsglltdrvGrkpvllvglfifvlsqllfals.......snitvlii....arilqGfgaaaalvagaaliadiikeeersvalgllsagialgpilGpllGavla....qalgwralflilallallafil 133
                  +y +g +  ++++g+++d++G +  l++g+f+ +l  +l++++        ++tvl++    + il+G   +++ +a+aa +a+  + +  s+ lg++   i+   ++  ++G + +    +a+gw    +i +++++++  +
  MMETSP1061-20121228|50039_1 311 LYSVGMMPGGIIVGYVSDIFGGRRALVIGVFMGLLIVFLAVFAkvsespdLSPTVLLFmlgcMGILVGGPNNIITSAVAADLASHPSVRGSSKSLGTVTGLINGTGSFTSAIGLLAIgplqTAFGW-SAVWIYLIGCTATGTC 452
                  78999999********************999988888888888789999944555544011145556666666666666666666555566666666666666555555555544444444999**.5567777777766554 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (465 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       200  (0.0487567); expected 82.0 (0.02)
Passed bias filter:                       86  (0.0209654); expected 82.0 (0.02)
Passed Vit filter:                        13  (0.00316919); expected 4.1 (0.001)
Passed Fwd filter:                         7  (0.00170648); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               7  [number of targets reported over threshold]
# CPU time: 0.34u 0.17s 00:00:00.51 Elapsed: 00:00:00.33
# Mc/sec: 1859.85
//
Query:       MMETSP1061-20121228|50065_1  [L=99]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (99 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        45  (0.0109703); expected 82.0 (0.02)
Passed bias filter:                       40  (0.00975134); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.12u 0.13s 00:00:00.25 Elapsed: 00:00:00.19
# Mc/sec: 687.73
//
Query:       MMETSP1061-20121228|50067_1  [L=71]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (71 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        24  (0.0058508); expected 82.0 (0.02)
Passed bias filter:                       21  (0.00511945); expected 82.0 (0.02)
Passed Vit filter:                         2  (0.000487567); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.26
# Mc/sec: 360.43
//
Query:       MMETSP1061-20121228|50070_1  [L=49]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (49 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        65  (0.0158459); expected 82.0 (0.02)
Passed bias filter:                       58  (0.0141394); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.11s 00:00:00.20 Elapsed: 00:00:00.32
# Mc/sec: 202.11
//
Query:       MMETSP1061-20121228|50074_1  [L=59]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (59 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       116  (0.0282789); expected 82.0 (0.02)
Passed bias filter:                       90  (0.0219405); expected 82.0 (0.02)
Passed Vit filter:                         4  (0.000975134); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.14s 00:00:00.23 Elapsed: 00:00:00.25
# Mc/sec: 311.49
//
Query:       MMETSP1061-20121228|50078_1  [L=149]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (149 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        84  (0.0204778); expected 82.0 (0.02)
Passed bias filter:                       82  (0.0199902); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.14s 00:00:00.27 Elapsed: 00:00:00.21
# Mc/sec: 936.49
//
Query:       MMETSP1061-20121228|50080_1  [L=84]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
       0.25    9.5   6.1       0.29    9.3   4.2    1.2  1  TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family


Domain annotation for each model (and alignments):
>> TIGR03495  phage_LysB: phage lysis regulatory protein, LysB family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    9.3   4.2   7.1e-05      0.29      17      75 ..      24      82 ..      13      84 .] 0.87

  Alignments for each domain:
  == domain 1    score: 9.3 bits;  conditional E-value: 7.1e-05
    TIGR03495 17 qsqrlrearaslekaekalkaqqaelekkanqleallaeakrneeaqaqLrqqlaqaea 75
                 qs+r + ++++  +a++ +k+++  +e+ + +++al+ae k+ +   + Lr  la+  +
  MMETSP1061-20121228|50080_1 24 QSKRKERLEQNRISARESRKRKKSMIEELQRTVIALTAENKELNGRNQSLRVGLADIGQ 82
                 6788889999999999999999999***9999999999999999999999988887665 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (84 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       265  (0.0646026); expected 82.0 (0.02)
Passed bias filter:                      156  (0.0380302); expected 82.0 (0.02)
Passed Vit filter:                         9  (0.00219405); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.11u 0.16s 00:00:00.27 Elapsed: 00:00:00.22
# Mc/sec: 503.96
//
Query:       MMETSP1061-20121228|50092_1  [L=362]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    4.8e-10   37.1   0.0    4.1e-09   34.1   0.0    2.0  2  TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
    2.2e-09   34.6   0.1    1.7e-08   31.7   0.0    2.0  2  TIGR00536 hemK_fam: methyltransferase, HemK family
    1.5e-07   28.9   0.0    1.3e-06   25.8   0.0    1.9  2  TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
    1.1e-06   26.8   0.0    2.2e-06   25.8   0.0    1.5  1  TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
      1e-05   22.9   0.0    1.6e-05   22.4   0.0    1.2  1  TIGR00406 prmA: ribosomal protein L11 methyltransferase
    2.3e-05   21.9   0.0    7.7e-05   20.1   0.1    1.7  2  TIGR02752 MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
    0.00022   18.6   0.1    0.00034   17.9   0.1    1.2  1  TIGR02021 BchM-ChlM: magnesium protoporphyrin O-methyltransferase
    0.00037   17.7   0.0    0.00071   16.8   0.0    1.4  1  TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
    0.00058   17.1   0.0    0.00079   16.6   0.0    1.2  1  TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
      0.003   15.3   0.0     0.0045   14.7   0.0    1.2  1  TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase
     0.0074   13.9   0.0      0.011   13.4   0.0    1.2  1  TIGR02072 BioC: biotin biosynthesis protein BioC
     0.0082   13.3   0.2       0.61    7.2   0.0    2.1  2  TIGR01177 TIGR01177: TIGR01177 family protein


Domain annotation for each model (and alignments):
>> TIGR03534  RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.1   0.0   1.2e-11   4.1e-09      80     148 ..      57     132 ..      48     143 .. 0.79
   2 ?    0.5   0.0      0.22        74     153     173 ..     196     216 ..     179     224 .. 0.78

  Alignments for each domain:
  == domain 1    score: 34.1 bits;  conditional E-value: 1.2e-11
    TIGR03534  80 aleel.....kkkeklkvlDlgtGsGaIalalakel.pdakviavDiseeAlkvarkNakrlglke.veflksdll 148
                  +l+++       ++  ++lDlg+G+G++++a a  + +   v++vD++++Al++a +N+++ +l++ v+f+k+ + 
  MMETSP1061-20121228|50092_1  57 VLDYAlkrgdLGNPGQSCLDLGCGTGMLTVAAAFCVgEGEFVFGVDCDDDALAIAGENVEHVDLEDcVRFVKARVR 132
                  44444433342333679**************998875677899*****************************9875 PP

  == domain 2    score: 0.5 bits;  conditional E-value: 0.22
    TIGR03534 153 ekgkfdlivsNPPYipeaeke 173
                  e++ ++ +v+NPP+  +++++
  MMETSP1061-20121228|50092_1 196 EDNCVETVVTNPPFGTKSDNA 216
                  5666899******97766655 PP

>> TIGR00536  hemK_fam: methyltransferase, HemK family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.7   0.0   4.9e-11   1.7e-08     116     173 ..      72     130 ..      61     138 .. 0.89
   2 ?    0.3   0.0      0.19        65     182     197 ..     199     214 ..     193     222 .. 0.78

  Alignments for each domain:
  == domain 1    score: 31.7 bits;  conditional E-value: 4.9e-11
    TIGR00536 116 khilDlgtGsGcIalalAleipnae.viavDistdalavaeeNaeklkleerveliqsn 173
                  +  lDlg+G+G   +a A  + + e v +vD+  dala+a eN+e+  le+ v++++ +
  MMETSP1061-20121228|50092_1  72 QSCLDLGCGTGMLTVAAAFCVGEGEfVFGVDCDDDALAIAGENVEHVDLEDCVRFVKAR 130
                  6789***************9998773689**************************9987 PP

  == domain 2    score: 0.3 bits;  conditional E-value: 0.19
    TIGR00536 182 kidlivsNPPYidked 197
                   ++ +v+NPP+  k d
  MMETSP1061-20121228|50092_1 199 CVETVVTNPPFGTKSD 214
                  57899*****977776 PP

>> TIGR03533  L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   3.7e-09   1.3e-06     123     180 ..      72     130 ..      55     138 .. 0.89
   2 ?    0.6   0.0      0.18        62     185     208 ..     195     218 ..     188     228 .. 0.81

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 3.7e-09
    TIGR03533 123 krvldlctGsGClaiaaaeafpeae.vdavDisedaLevaeenieeyeledrveliqsd 180
                  ++ ldl +G+G l++aaa    e e v  vD  +daL++a en+e+ +led v+ +++ 
  MMETSP1061-20121228|50092_1  72 QSCLDLGCGTGMLTVAAAFCVGEGEfVFGVDCDDDALAIAGENVEHVDLEDCVRFVKAR 130
                  689***************99987663789************************999875 PP

  == domain 2    score: 0.6 bits;  conditional E-value: 0.18
    TIGR03533 185 legkkydlivsnPPYvdaeelael 208
                  le+++ + +v+nPP+ ++++ a +
  MMETSP1061-20121228|50092_1 195 LEDNCVETVVTNPPFGTKSDNAGI 218
                  56778899*******998887766 PP

>> TIGR02469  CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   6.6e-09   2.2e-06      19      76 ..      70     129 ..      49     147 .. 0.83

  Alignments for each domain:
  == domain 1    score: 25.8 bits;  conditional E-value: 6.6e-09
    TIGR02469  19 kgdvllDiGaGtGsvtieaarlvpk.grvyaierneealelieeNlrrfgvsni.eiveg 76 
                  +g+ +lD G+GtG +t+ aa  v++   v++++ + +al    eN+++ ++++  + v++
  MMETSP1061-20121228|50092_1  70 PGQSCLDLGCGTGMLTVAAAFCVGEgEFVFGVDCDDDALAIAGENVEHVDLEDCvRFVKA 129
                  6899*********************5569*******************977664044444 PP

>> TIGR00406  prmA: ribosomal protein L11 methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   22.4   0.0   4.6e-08   1.6e-05     156     214 ..      67     127 ..      61     139 .. 0.82

  Alignments for each domain:
  == domain 1    score: 22.4 bits;  conditional E-value: 4.6e-08
    TIGR00406 156 ldlkdkkviDvGcGSGiLsiaalkl..gaakvvavDiDplavesarkNlelNqvsdllqvk 214
                  l +++++ +D+GcG G+L++aa+    + + v++vD D  a+  a +N+e  +++d ++ +
  MMETSP1061-20121228|50092_1  67 LGNPGQSCLDLGCGTGMLTVAAAFCvgEGEFVFGVDCDDDALAIAGENVEHVDLEDCVRFV 127
                  556789**************99864227789*****************9998888877654 PP

>> TIGR02752  MenG_heptapren: 2-heptaprenyl-1,4-naphthoquinone methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   20.1   0.1   2.3e-07   7.7e-05      45     112 ..      70     139 ..      58     141 .. 0.83
   2 ?   -1.9   0.0       1.3   4.3e+02      93     120 ..     178     205 ..     171     231 .. 0.77

  Alignments for each domain:
  == domain 1    score: 20.1 bits;  conditional E-value: 2.3e-07
    TIGR02752  45 kgkkaldvccgtadwaialaeavgkegevkgldfsenmlsvgkekvkdaklen.velvhgn.amelpyed 112
                   g+++ld+ cgt+  ++a a  vg+   v g+d  ++ l+++ e v++ +le+ v++v+    m+ p+ed
  MMETSP1061-20121228|50092_1  70 PGQSCLDLGCGTGMLTVAAAFCVGEGEFVFGVDCDDDALAIAGENVEHVDLEDcVRFVKARvRMKAPHED 139
                  599*********************************************9998735555544146666665 PP

  == domain 2    score: -1.9 bits;  conditional E-value: 1.3
    TIGR02752  93 aklenvelvhgnamelpyednsfdyvti 120
                  a+l++ +l+h     +p edn+ + v  
  MMETSP1061-20121228|50092_1 178 ASLTKARLIHDGQDGIPLEDNCVETVVT 205
                  678899999999999*****99987754 PP

>> TIGR02021  BchM-ChlM: magnesium protoporphyrin O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.9   0.1     1e-06   0.00034      54     111 ..      70     130 ..      56     138 .. 0.87

  Alignments for each domain:
  == domain 1    score: 17.9 bits;  conditional E-value: 1e-06
    TIGR02021  54 kGkkvlDAGCGtGllsielA...krGaivkavDiseklvelarkraekedeaenveFevnd 111
                   G+  lD GCGtG+l++  A    +G  v +vD  ++ +++a ++ e+ d  + v+F+   
  MMETSP1061-20121228|50092_1  70 PGQSCLDLGCGTGMLTVAAAfcvGEGEFVFGVDCDDDALAIAGENVEHVDLEDCVRFVKAR 130
                  58999***********998744469************************999999998665 PP

>> TIGR01934  MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.8   0.0   2.1e-06   0.00071      39      97 ..      70     131 ..      59     140 .. 0.88

  Alignments for each domain:
  == domain 1    score: 16.8 bits;  conditional E-value: 2.1e-06
    TIGR01934  39 keekvlDvatGtGdlaielakkae..akvtgvDlseemLevakkkakek.eeanvefieada 97 
                   ++ +lD+ +GtG l+++ a  ++    v gvD+  + L++a + +++   e  v+f++a +
  MMETSP1061-20121228|50092_1  70 PGQSCLDLGCGTGMLTVAAAFCVGegEFVFGVDCDDDALAIAGENVEHVdLEDCVRFVKARV 131
                  6899************999999888888******************9999889999999876 PP

>> TIGR01983  UbiG: 3-demethylubiquinone-9 3-O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   16.6   0.0   2.3e-06   0.00079      50     104 ..      71     129 ..      19     139 .. 0.80

  Alignments for each domain:
  == domain 1    score: 16.6 bits;  conditional E-value: 2.3e-06
    TIGR01983  50 glkvlDvGcGgGllseslarlgae...vtgiDlseelievAklhakkdplk.kieyelk 104
                  g + lD+GcG G+l+ + a    e   v g+D  ++++++A +  ++ +l+  +++  +
  MMETSP1061-20121228|50092_1  71 GQSCLDLGCGTGMLTVAAAFCVGEgefVFGVDCDDDALAIAGENVEHVDLEdCVRFVKA 129
                  7789**********9998864333345**************999888877755666655 PP

>> TIGR00080  pimt: protein-L-isoaspartate O-methyltransferase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   14.7   0.0   1.3e-05    0.0045      55     122 ..      43     115 ..      33     129 .. 0.77

  Alignments for each domain:
  == domain 1    score: 14.7 bits;  conditional E-value: 1.3e-05
    TIGR00080  55 gygqtisaphmvakmlel.Le...l.kagakvLeiGtGsGYqaavlaelvgrdglvvsierieeLvekaerrl 122
                  + +q+  +p + a++l++ L+   l ++g++ L++G+G+G +++  a  vg+   v++++  ++    a  ++
  MMETSP1061-20121228|50092_1  43 ELEQYPTSPELAAHVLDYaLKrgdLgNPGQSCLDLGCGTGMLTVAAAFCVGEGEFVFGVDCDDDALAIAGENV 115
                  55677778888888888843355543789***********************999**9986665555555555 PP

>> TIGR02072  BioC: biotin biosynthesis protein BioC
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   13.4   0.0   3.1e-05     0.011      36      80 ..      72     117 ..      52     131 .. 0.77

  Alignments for each domain:
  == domain 1    score: 13.4 bits;  conditional E-value: 3.1e-05
    TIGR02072  36 akvLdiGcGtGiltrallkrfpqae.lialDiseemleqakkklsn 80 
                  ++ Ld+GcGtG+lt a +  + + e ++ +D  +  l++a +++++
  MMETSP1061-20121228|50092_1  72 QSCLDLGCGTGMLTVAAAFCVGEGEfVFGVDCDDDALAIAGENVEH 117
                  689***********99888877777466788888888888877764 PP

>> TIGR01177  TIGR01177: TIGR01177 family protein
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    4.0   0.1     0.016       5.6     182     231 ..      70     122 ..      67     137 .. 0.84
   2 !    7.2   0.0    0.0018      0.61     242     272 ..     193     223 ..     185     275 .. 0.82

  Alignments for each domain:
  == domain 1    score: 4.0 bits;  conditional E-value: 0.016
    TIGR01177 182 egdrvlDPfcGTGgilIEAgLl...GikviglDidekmveGariNLehYgied 231
                  +g++ lD  cGTG + + A+     G  v g+D d +  + a +N eh  +ed
  MMETSP1061-20121228|50092_1  70 PGQSCLDLGCGTGMLTVAAAFCvgeGEFVFGVDCDDDALAIAGENVEHVDLED 122
                  69999*************99865557789999**9999999999999999998 PP

  == domain 2    score: 7.2 bits;  conditional E-value: 0.0018
    TIGR01177 242 lplrsesvdaiatDpPYgrstkaagekleeL 272
                  +pl ++ v+ ++t pP+g ++  ag + + L
  MMETSP1061-20121228|50092_1 193 IPLEDNCVETVVTNPPFGTKSDNAGIDVQFL 223
                  78999****************9999866533 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (362 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        91  (0.0221843); expected 82.0 (0.02)
Passed bias filter:                       78  (0.0190151); expected 82.0 (0.02)
Passed Vit filter:                        19  (0.00463189); expected 4.1 (0.001)
Passed Fwd filter:                        12  (0.0029254); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):              12  [number of targets reported over threshold]
# CPU time: 0.21u 0.15s 00:00:00.36 Elapsed: 00:00:00.28
# Mc/sec: 1706.43
//
Query:       MMETSP1061-20121228|50111_1  [L=122]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (122 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        96  (0.0234032); expected 82.0 (0.02)
Passed bias filter:                       95  (0.0231594); expected 82.0 (0.02)
Passed Vit filter:                         5  (0.00121892); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.13u 0.13s 00:00:00.26 Elapsed: 00:00:00.21
# Mc/sec: 766.79
//
Query:       MMETSP1061-20121228|50124_1  [L=92]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (92 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        55  (0.0134081); expected 82.0 (0.02)
Passed bias filter:                       54  (0.0131643); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.19
# Mc/sec: 639.11
//
Query:       MMETSP1061-20121228|50121_1  [L=322]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (322 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       115  (0.0280351); expected 82.0 (0.02)
Passed bias filter:                      113  (0.0275475); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.20u 0.15s 00:00:00.35 Elapsed: 00:00:00.27
# Mc/sec: 1574.09
//
Query:       MMETSP1061-20121228|50128_1  [L=351]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
  ------ inclusion threshold ------
      0.041   10.8   0.0      0.062   10.2   0.0    1.2  1  TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III


Domain annotation for each model (and alignments):
>> TIGR00747  fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   10.2   0.0   1.5e-05     0.062     149     197 ..      71     119 ..      61     137 .. 0.80

  Alignments for each domain:
  == domain 1    score: 10.2 bits;  conditional E-value: 1.5e-05
    TIGR00747 149 kDRgtcvlFgDGagavvvgeseeegeilsvelgadgekgellrlpaaek 197
                  + R+  vlFg G+ga ++ + e+++e+ +++lg + ++++ +  +  +k
  MMETSP1061-20121228|50128_1  71 DTRNRLVLFGGGSGADLLRSGEDNSEVWELQLGDNWHEHNKFEESFPWK 119
                  459******************************9999888887766555 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (351 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        58  (0.0141394); expected 82.0 (0.02)
Passed bias filter:                       56  (0.0136519); expected 82.0 (0.02)
Passed Vit filter:                         3  (0.000731351); expected 4.1 (0.001)
Passed Fwd filter:                         1  (0.000243784); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.19u 0.15s 00:00:00.34 Elapsed: 00:00:00.32
# Mc/sec: 1447.76
//
Query:       MMETSP1061-20121228|50132_1  [L=85]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (85 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        38  (0.00926377); expected 82.0 (0.02)
Passed bias filter:                       35  (0.00853242); expected 82.0 (0.02)
Passed Vit filter:                         0  (0); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.10u 0.12s 00:00:00.22 Elapsed: 00:00:00.22
# Mc/sec: 509.96
//
Query:       MMETSP1061-20121228|50143_1  [L=406]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    1.1e-32  110.9   0.0    1.8e-32  110.2   0.0    1.3  1  TIGR00093 TIGR00093: pseudouridine synthase
    1.6e-09   35.4   3.7      1e-06   26.1   0.0    3.3  4  TIGR00005 rluA_subfam: pseudouridine synthase, RluA family


Domain annotation for each model (and alignments):
>> TIGR00093  TIGR00093: pseudouridine synthase
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.2   0.0   8.9e-36   1.8e-32       2     157 ..     197     366 ..     196     370 .. 0.87

  Alignments for each domain:
  == domain 1    score: 110.2 bits;  conditional E-value: 8.9e-36
    TIGR00093   2 KPkgvlsskdDpekrkvvkdllek.l.rgkklaavGRLDrdseGlllltddgelqhrlthpekevektYlvqvegsvtd..edlealrkGvkledektkpaklklikepel........ktklrvtlteGrnrqvrRltaavglevlrLvRvrigdvsl.egL.eeGewr 157
                  KP+gv++++d +  +++v++l+   +   +++++vGRLD+d++G++l+t+dg l ++ +++e++  k Y v ++ +++d    l +lr Gv ++ e+ ++   k+++ p+         + +lr+tl+eGrnrqvr++t+avg+++++L+Rv++  + l  gL  +G+w 
  MMETSP1061-20121228|50143_1 197 KPRGVICTTDPKIPHNIVEELEIDgYhPPHRVYPVGRLDKDTSGIILVTSDGRLPNAALRKEHKRPKVYEVGLDRPISDptRVLGELRTGVIISTETVRNGVRKTLTAPTEpcqveqltDRWLRITLKEGRNRQVRKMTQAVGYKTVELERVAFAGILLePGLrGPGDWD 366
                  9*******9988999999998888887899************************************************9334589********9999886666666555556778888777*********************************9999843452467776 PP

>> TIGR00005  rluA_subfam: pseudouridine synthase, RluA family
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !    6.4   0.0    0.0005         1       6      42 ..      82     115 ..      77     125 .. 0.77
   2 ?   -2.0   0.0      0.18   3.6e+02     163     198 ..     135     174 ..     132     192 .. 0.58
   3 !   26.1   0.0   4.9e-10     1e-06      87     137 ..     197     245 ..     191     265 .. 0.89
   4 ?    1.8   0.0     0.013        26     212     236 ..     317     341 ..     289     344 .. 0.86

  Alignments for each domain:
  == domain 1    score: 6.4 bits;  conditional E-value: 0.0005
    TIGR00005   6 qrldevlaselkdlsrskikklieegqVkvnkkkvta 42 
                   rl +v++++    sr ++ +lieeg+V+vn+++v  
  MMETSP1061-20121228|50143_1  82 IRLNKVFKRTH---SRREADRLIEEGRVSVNGERVNT 115
                  56666666554...69999************877654 PP

  == domain 2    score: -2.0 bits;  conditional E-value: 0.18
    TIGR00005 163 vkgefkskegtvdaplarvenkkglvavakss.....gkea 198
                  v+g +++ ++ vd++++ +++k++++  +  s     +k++
  MMETSP1061-20121228|50143_1 135 VEG-WEEMNFVVDNAYSIKKPKSVKNDTSTRSsninqAKKS 174
                  555.6666677777777666666666555443344444444 PP

  == domain 3    score: 26.1 bits;  conditional E-value: 4.9e-10
    TIGR00005  87 KPsglvvhptggyekntvlnallahlkeelvsrleivhRLDrdTSGllvva 137
                  KP+g+++  + + ++n +++ l+   ++    r+++v RLD+dTSG+++v 
  MMETSP1061-20121228|50143_1 197 KPRGVICTTDPKIPHN-IVEELEIDGYHP-PHRVYPVGRLDKDTSGIILVT 245
                  9*************99.999999999866.59****************996 PP

  == domain 4    score: 1.8 bits;  conditional E-value: 0.013
    TIGR00005 212 slvelkllTGRtHQiRVHlqylghp 236
                   ++++ l  GR  Q+R  +q++g+ 
  MMETSP1061-20121228|50143_1 317 RWLRITLKEGRNRQVRKMTQAVGYK 341
                  4899****************99997 PP



Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (406 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                       141  (0.0343735); expected 82.0 (0.02)
Passed bias filter:                      106  (0.0258411); expected 82.0 (0.02)
Passed Vit filter:                        17  (0.00414432); expected 4.1 (0.001)
Passed Fwd filter:                         2  (0.000487567); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               2  [number of targets reported over threshold]
# CPU time: 0.24u 0.14s 00:00:00.38 Elapsed: 00:00:00.42
# Mc/sec: 1275.89
//
Query:       MMETSP1061-20121228|50161_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        31  (0.00755729); expected 82.0 (0.02)
Passed bias filter:                       29  (0.00706972); expected 82.0 (0.02)
Passed Vit filter:                         6  (0.0014627); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.09u 0.15s 00:00:00.24 Elapsed: 00:00:00.20
# Mc/sec: 402.57
//
Query:       MMETSP1061-20121228|50166_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Model    Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------

   [No hits detected that satisfy reporting thresholds]


Domain annotation for each model (and alignments):

   [No targets detected that satisfy reporting thresholds]


Internal pipeline statistics summary:
-------------------------------------
Query sequence(s):                         1  (61 residues)
Target model(s):                        4102  (1319891 nodes)
Passed MSV filter:                        66  (0.0160897); expected 82.0 (0.02)
Passed bias filter:                       66  (0.0160897); expected 82.0 (0.02)
Passed Vit filter:                         1  (0.000243784); expected 4.1 (0.001)
Passed Fwd filter:                         0  (0); expected 0.0 (1e-05)
Initial search space (Z):               4102  [actual number of targets]
Domain search space  (domZ):               0  [number of targets reported over threshold]
# CPU time: 0.11u 0.14s 00:00:00.25 Elapsed: 00:00:00.22
# Mc/sec: 365.97
//
Query:       MMETSP1061-20121228|50168_1  [L=61]
Scores for complete sequence (score includes all domains):
   --- full
[file cut: first 33554432 bytes kept]
[document cut: first 32401252 of 33554432 characters kept]
